id category name description provided_by synonym 0000233 0000589 0100001 close_match comment consider created_by creation_date default_namespace deprecated has_alternative_id has_o_b_o_format_version has_o_b_o_namespace is_class_level is_metadata_tag knowledge_source license logical_interpretation object predicate relation shorthand subject type version GO:2000071 biolink:NamedThing regulation of defense response by callose deposition Any process that modulates the frequency, rate or extent of defense response by callose deposition. tmpzr1t_l9r_go_relaxed.owl regulation of callose localization during defense response|regulation of callose deposition during defense response tb 2010-08-23T11:34:01Z biological_process owl:Class GO:0065007 biolink:NamedThing biological regulation Any process that modulates a measurable attribute of any biological process, quality or function. tmpzr1t_l9r_go_relaxed.owl regulation biological_process owl:Class GO:0070665 biolink:NamedThing positive regulation of leukocyte proliferation Any process that activates or increases the frequency, rate or extent of leukocyte proliferation. tmpzr1t_l9r_go_relaxed.owl activation of leukocyte proliferation|upregulation of leukocyte proliferation|stimulation of leukocyte proliferation|up-regulation of leukocyte proliferation|up regulation of leukocyte proliferation mah 2009-05-28T05:36:46Z biological_process owl:Class GO:0070663 biolink:NamedThing regulation of leukocyte proliferation Any process that modulates the frequency, rate or extent of leukocyte proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T05:30:39Z biological_process owl:Class GO:0015537 biolink:NamedThing xanthosine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: xanthosine(out) + H+(out) = xanthosine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl xanthosine:hydrogen ion symporter activity|xanthosine permease activity molecular_function owl:Class GO:0015506 biolink:NamedThing nucleoside:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + H+(out) = nucleoside(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl nucleoside:hydrogen symporter activity|nucleoside:hydrogen ion symporter activity|nucleoside permease activity GO:0015536 molecular_function owl:Class GO:0031585 biolink:NamedThing regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity Any process that modulates the frequency, rate or extent of the activity of the inositol 1,4,5-trisphosphate-sensitive calcium-release channel. tmpzr1t_l9r_go_relaxed.owl regulation of inositol-1,4,5-triphosphate receptor activity|regulation of IP3 receptor activity biological_process owl:Class GO:2001257 biolink:NamedThing regulation of cation channel activity Any process that modulates the frequency, rate or extent of cation channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of cation diffusion facilitator activity|regulation of nonselective cation channel activity vk 2011-12-07T07:14:43Z biological_process owl:Class GO:0034443 biolink:NamedThing negative regulation of lipoprotein oxidation Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein oxidation. tmpzr1t_l9r_go_relaxed.owl inhibition of lipoprotein oxidation biological_process owl:Class GO:0050748 biolink:NamedThing negative regulation of lipoprotein metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl down regulation of lipoprotein metabolic process|inhibition of lipoprotein metabolic process|down-regulation of lipoprotein metabolic process|negative regulation of lipoprotein metabolism|downregulation of lipoprotein metabolic process biological_process owl:Class GO:0043395 biolink:NamedThing heparan sulfate proteoglycan binding Binding to a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit. tmpzr1t_l9r_go_relaxed.owl heparin proteoglycan binding molecular_function owl:Class GO:1901681 biolink:NamedThing sulfur compound binding Binding to a sulfur compound. tmpzr1t_l9r_go_relaxed.owl sulfur molecular entity binding pr 2012-11-26T20:45:23Z molecular_function owl:Class GO:0007523 biolink:NamedThing larval visceral muscle development The process whose specific outcome is the progression of the larval visceral muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048569 biolink:NamedThing post-embryonic animal organ development Development, taking place during the post-embryonic phase of an animal tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl post-embryonic animal organogenesis biological_process owl:Class GO:0033021 biolink:NamedThing cyclopentanol biosynthetic process The chemical reactions and pathways resulting in the formation of cyclopentanol. tmpzr1t_l9r_go_relaxed.owl cyclopentanol synthesis|cyclopentanol biosynthesis|cyclopentanol anabolism|cyclopentanol formation biological_process owl:Class GO:0046165 biolink:NamedThing alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. tmpzr1t_l9r_go_relaxed.owl alcohol formation|alcohol synthesis|alcohol anabolism|alcohol biosynthesis biological_process owl:Class GO:0061291 biolink:NamedThing canonical Wnt signaling pathway involved in ureteric bud branching The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the branching of the ureteric bud. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in ureteric bud branching|canonical Wnt receptor signaling pathway involved in ureteric bud branching dph 2010-09-03T12:15:19Z biological_process owl:Class GO:0060070 biolink:NamedThing canonical Wnt signaling pathway The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway|canonical Wnt-activated signaling pathway|Wnt receptor signaling pathway through beta-catenin|Wnt receptor signalling pathway through beta-catenin|Wnt receptor signaling pathway via beta-catenin|frizzled-1 receptor signaling pathway biological_process owl:Class GO:1904525 biolink:NamedThing positive regulation of DNA amplification Any process that activates or increases the frequency, rate or extent of DNA amplification. tmpzr1t_l9r_go_relaxed.owl activation of DNA amplification|up regulation of DNA amplification|upregulation of DNA amplification|up-regulation of DNA amplification mcc 2015-07-29T16:24:25Z biological_process owl:Class GO:1904523 biolink:NamedThing regulation of DNA amplification Any process that modulates the frequency, rate or extent of DNA amplification. tmpzr1t_l9r_go_relaxed.owl mcc 2015-07-29T16:24:13Z biological_process owl:Class GO:0033122 biolink:NamedThing negative regulation of purine nucleotide catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides. tmpzr1t_l9r_go_relaxed.owl negative regulation of purine nucleotide catabolism|negative regulation of purine nucleotide degradation|negative regulation of purine nucleotide breakdown biological_process owl:Class GO:0030812 biolink:NamedThing negative regulation of nucleotide catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleotide catabolism|negative regulation of nucleotide degradation|down-regulation of nucleotide catabolic process|down regulation of nucleotide catabolic process|inhibition of nucleotide catabolic process|downregulation of nucleotide catabolic process|negative regulation of nucleotide breakdown biological_process owl:Class GO:0010147 biolink:NamedThing fructan catabolic process The chemical reactions and pathways resulting in the breakdown of fructan, a polysaccharide consisting of fructose residues. tmpzr1t_l9r_go_relaxed.owl levan catabolic process|fructan catabolism|levan catabolism|fructan breakdown|fructan degradation MetaCyc:PWY-862 biological_process owl:Class GO:0010145 biolink:NamedThing fructan metabolic process The chemical reactions and pathways involving fructan, a polysaccharide consisting of fructose residues. tmpzr1t_l9r_go_relaxed.owl fructan metabolism|levan metabolic process biological_process owl:Class GO:0010922 biolink:NamedThing positive regulation of phosphatase activity Any process that increases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035306 biolink:NamedThing positive regulation of dephosphorylation Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a molecule. tmpzr1t_l9r_go_relaxed.owl stimulation of dephosphorylation|up regulation of dephosphorylation|upregulation of dephosphorylation|activation of dephosphorylation|up-regulation of dephosphorylation biological_process owl:Class GO:0016055 biolink:NamedThing Wnt signaling pathway The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state. tmpzr1t_l9r_go_relaxed.owl Wingless signaling pathway|Wg signalling pathway|Wnt-activated signaling pathway|frizzled signaling pathway|Wnt receptor signaling pathway|Wnt receptor signalling pathway|frizzled signalling pathway|Wg signaling pathway|Wingless signalling pathway GO:0007222 biological_process owl:Class GO:1905114 biolink:NamedThing cell surface receptor signaling pathway involved in cell-cell signaling Any cell surface receptor signaling pathway that is involved in cell-cell signaling. tmpzr1t_l9r_go_relaxed.owl cell surface receptor linked signaling pathway involved in cell-cell signalling|cell surface receptor linked signaling pathway involved in cell-cell signaling|cell surface receptor signaling pathway involved in cell-cell signalling|cell surface receptor linked signalling pathway involved in cell-cell signalling|cell surface receptor linked signalling pathway involved in cell-cell signaling|cell surface receptor linked signal transduction involved in cell-cell signalling|cell surface receptor linked signal transduction involved in cell-cell signaling dos 2016-04-06T16:59:57Z biological_process owl:Class GO:0014058 biolink:NamedThing negative regulation of acetylcholine secretion, neurotransmission Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of acetylcholine. tmpzr1t_l9r_go_relaxed.owl inhibition of acetylcholine secretion|down regulation of acetylcholine secretion|down-regulation of acetylcholine secretion|downregulation of acetylcholine secretion biological_process owl:Class GO:0043271 biolink:NamedThing negative regulation of ion transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl downregulation of ion transport|down regulation of ion transport|inhibition of ion transport|down-regulation of ion transport biological_process owl:Class GO:1900602 biolink:NamedThing endocrocin biosynthetic process The chemical reactions and pathways resulting in the formation of endocrocin. tmpzr1t_l9r_go_relaxed.owl endocrocin formation|endocrocin anabolism|endocrocin biosynthesis|endocrocin synthesis di 2012-05-15T06:57:42Z biological_process owl:Class GO:1900600 biolink:NamedThing endocrocin metabolic process The chemical reactions and pathways involving endocrocin. tmpzr1t_l9r_go_relaxed.owl endocrocin metabolism di 2012-05-15T06:57:14Z biological_process owl:Class GO:0070292 biolink:NamedThing N-acylphosphatidylethanolamine metabolic process The chemical reactions and pathways involving N-acylphosphatidylethanolamines. An N-acylphosphatidylethanolamine is a phosphatidylethanolamine substituted at nitrogen by an acyl group. tmpzr1t_l9r_go_relaxed.owl N-acylphosphatidylethanolamine metabolism|NAPE metabolism|NAPE metabolic process biological_process owl:Class GO:1901564 biolink:NamedThing organonitrogen compound metabolic process The chemical reactions and pathways involving organonitrogen compound. tmpzr1t_l9r_go_relaxed.owl organonitrogen compound metabolism pr 2012-11-04T15:17:52Z biological_process owl:Class GO:1990661 biolink:NamedThing S100A8 complex A protein complex composed of a S100A8 dimer and capable of binding to toll-like receptor 4 (TLR4). tmpzr1t_l9r_go_relaxed.owl S100A8 homodimer An example of this is S100A8 in human (UniProt symbol P27005) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T15:33:32Z cellular_component owl:Class GO:0032991 biolink:NamedThing protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. tmpzr1t_l9r_go_relaxed.owl protein containing complex|macromolecule complex|protein complex|macromolecular complex|protein-protein complex A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. GO:0043234 cellular_component owl:Class GO:0019543 biolink:NamedThing propionate catabolic process The chemical reactions and pathways resulting in the breakdown of propionate, the anion derived from propionic acid. tmpzr1t_l9r_go_relaxed.owl propionate degradation|propionate breakdown|propionate catabolism biological_process owl:Class GO:0019541 biolink:NamedThing propionate metabolic process The chemical reactions and pathways involving propionate, the anion derived from propionic (propanoic) acid, a carboxylic acid important in the energy metabolism of ruminants. tmpzr1t_l9r_go_relaxed.owl propanoate metabolic process|propionate metabolism|propanoate metabolism biological_process owl:Class GO:0051007 biolink:NamedThing squalene-hopene cyclase activity Catalysis of the reaction: squalene = hop-22(29)-ene. tmpzr1t_l9r_go_relaxed.owl squalene mutase (cyclizing)|squalene:hopene cyclase activity MetaCyc:5.4.99.17-RXN|RHEA:17637|EC:5.4.99.17 molecular_function owl:Class GO:0034072 biolink:NamedThing squalene cyclase activity Catalysis of the reaction: squalene = triterpene. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051129 biolink:NamedThing negative regulation of cellular component organization Any process that stops, prevents, or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. tmpzr1t_l9r_go_relaxed.owl inhibition of cell organization|negative regulation of cellular component organization and biogenesis|downregulation of cell organization|down regulation of cell organization|down-regulation of cell organization|negative regulation of cell organisation biological_process owl:Class GO:0051479 biolink:NamedThing mannosylglycerate biosynthetic process The chemical reactions and pathways resulting in the formation of mannosylglycerate, a very common compatible solute in thermophilic and hyperthermophilic organisms. tmpzr1t_l9r_go_relaxed.owl mannosylglycerate synthesis|mannosylglycerate biosynthesis|mannosylglycerate formation|mannosylglycerate anabolism biological_process owl:Class GO:0016138 biolink:NamedThing glycoside biosynthetic process The chemical reactions and pathways resulting in the formation of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. tmpzr1t_l9r_go_relaxed.owl O-glycoside anabolism|O-glycoside synthesis|glycoside anabolism|glycoside formation|O-glycoside formation|glycoside biosynthesis|O-glycoside biosynthesis|glycoside synthesis|O-glycoside biosynthetic process GO:0016141 biological_process owl:Class GO:0052783 biolink:NamedThing reuteran metabolic process The chemical reactions and pathways involving reuteran, a soluble glucan polymer with mainly alpha-(1->4) glycosidic linkages and significant amounts of alpha-(1->6) and alpha-(1->4,6) glucosidic linkages. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-04T09:16:35Z biological_process owl:Class GO:0030978 biolink:NamedThing alpha-glucan metabolic process The chemical reactions and pathways involving alpha-glucans, compounds composed of glucose residues linked by alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl alpha-glucan metabolism biological_process owl:Class GO:0035038 biolink:NamedThing female pronucleus assembly Assembly of the haploid nucleus of the unfertilized egg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070925 biolink:NamedThing organelle assembly The aggregation, arrangement and bonding together of a set of components to form an organelle. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-15T03:00:51Z biological_process owl:Class GO:0018705 biolink:NamedThing 1,2-dichloroethene reductive dehalogenase activity Catalysis of the reaction: 1,2-dichloroethene + 2 H+ + 2 e- = HCl + vinyl chloride. tmpzr1t_l9r_go_relaxed.owl 1,2-dichloroethylene reductive dehalogenase activity UM-BBD_enzymeID:e0272 molecular_function owl:Class GO:0016491 biolink:NamedThing oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on other substrates|redox activity Reactome:R-HSA-9026917|Reactome:R-HSA-8878581|Reactome:R-HSA-9024624|Reactome:R-HSA-9026001|Reactome:R-HSA-209921|Reactome:R-HSA-8936442|Reactome:R-HSA-1614362|Reactome:R-HSA-9027033|Reactome:R-HSA-9693722|Reactome:R-HSA-5662660|Reactome:R-HSA-9025007|EC:1.-.-.-|Reactome:R-HSA-390425|Reactome:R-HSA-3095889|Reactome:R-HSA-9024630|Reactome:R-HSA-209960|Reactome:R-HSA-9020249|Reactome:R-HSA-390438|Reactome:R-HSA-9020260 molecular_function owl:Class GO:0002175 biolink:NamedThing protein localization to paranode region of axon A cellular protein localization process in which a protein is transported to, or maintained at, the paranode region of an axon. tmpzr1t_l9r_go_relaxed.owl protein localisation to paranode region of axon hjd 2010-11-15T10:28:20Z biological_process owl:Class GO:0034613 biolink:NamedThing cellular protein localization Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell. tmpzr1t_l9r_go_relaxed.owl channel localizer activity|cellular protein localisation GO:0016249 biological_process owl:Class GO:0000107 biolink:NamedThing imidazoleglycerol-phosphate synthase activity Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + aminoimidazole carboxamide ribonucleotide + L-glutamate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl imidazole-glycerol-phosphate synthase activity|glutamine amidotransferase:cyclase activity|imidazole glycerol phosphate synthase activity|imidazoleglycerol phosphate synthase activity RHEA:24793|MetaCyc:GLUTAMIDOTRANS-RXN molecular_function owl:Class GO:0016763 biolink:NamedThing pentosyltransferase activity Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring pentosyl groups https://github.com/geneontology/go-ontology/issues/20486 EC:2.4.2.-|Reactome:R-HSA-112266|Reactome:R-HSA-112265 molecular_function owl:Class GO:0097666 biolink:NamedThing SCF-Met30/Pof1 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Met30 in S. cerevisiae (Pof1 in S pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:27:49Z cellular_component owl:Class GO:0019005 biolink:NamedThing SCF ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). tmpzr1t_l9r_go_relaxed.owl SCF complex substrate recognition subunit|Skp1/Cul1/F-box protein complex|SCF complex|CRL1 complex|CDL1 complex|Cul1-RING ubiquitin ligase complex|cullin-RING ligase 1 Wikipedia:SCF_complex cellular_component owl:Class GO:2001037 biolink:NamedThing positive regulation of tongue muscle cell differentiation Any process that activates or increases the frequency, rate or extent of tongue muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-24T11:10:22Z biological_process owl:Class GO:0046330 biolink:NamedThing positive regulation of JNK cascade Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the JNK cascade. tmpzr1t_l9r_go_relaxed.owl stimulation of JNK cascade|upregulation of JNK cascade|up regulation of JNK cascade|activation of JNK cascade|up-regulation of JNK cascade biological_process owl:Class GO:0072235 biolink:NamedThing metanephric distal tubule development The process whose specific outcome is the progression of the metanephric distal tubule over time, from its formation to the mature structure. The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:45:37Z biological_process owl:Class GO:0072234 biolink:NamedThing metanephric nephron tubule development The progression of a metanephric nephron tubule over time, from its initial formation to the mature structure. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:41:23Z biological_process owl:Class GO:0097673 biolink:NamedThing SCF-Ucc1 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is YLR224W in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl SCF-YLR224W ubiquitin ligase complex pr 2014-10-06T10:30:31Z cellular_component owl:Class GO:1903242 biolink:NamedThing regulation of cardiac muscle hypertrophy in response to stress Any process that modulates the frequency, rate or extent of cardiac muscle hypertrophy in response to stress. tmpzr1t_l9r_go_relaxed.owl rl 2014-08-01T16:31:36Z biological_process owl:Class GO:0010611 biolink:NamedThing regulation of cardiac muscle hypertrophy Any process that modulates the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140407 biolink:NamedThing L-alanine:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + L-alanine(in) = H+(in) + L-alanine(out). tmpzr1t_l9r_go_relaxed.owl pg 2019-12-11T14:17:48Z molecular_function owl:Class GO:0015180 biolink:NamedThing L-alanine transmembrane transporter activity Enables the transfer of L-alanine from one side of a membrane to the other. L-alanine is the L-enantiomer of 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-alanine transporter activity molecular_function owl:Class GO:1902634 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation Phosphatidylinositol-4,5-bisphosphate, PtdIns(4,5)P(2) common name. di 2014-01-18T00:34:36Z biological_process owl:Class GO:0031161 biolink:NamedThing phosphatidylinositol catabolic process The chemical reactions and pathways resulting in the breakdown of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. tmpzr1t_l9r_go_relaxed.owl PtdIns catabolic process|phosphatidylinositol breakdown|PtdIns catabolism|phosphatidylinositol degradation|phosphatidylinositol catabolism biological_process owl:Class GO:0002452 biolink:NamedThing B cell receptor editing The process of replacing receptors on B cells, in which RAG gene expression allows continued light-chain gene rearrangement and expression of a new light change which combines with the previous heavy chain to form a new receptor. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte receptor editing|B lymphocyte receptor editing|B-cell receptor editing biological_process owl:Class GO:0016447 biolink:NamedThing somatic recombination of immunoglobulin gene segments The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, as known as immunoglobulin gene segments, within a single locus. tmpzr1t_l9r_go_relaxed.owl somatic recombination of antibody gene segments biological_process owl:Class GO:0106003 biolink:NamedThing amyloid-beta complex Protein complex involved in modulation of signaling and synaptic function in the brain, predominantly in the cerebral cortex and hippocampus. Forms dimers and multimers of amyloid beta peptide 40 and peptide 42 (proteolytic cleavage products of amyloid beta A4 protein, also known as amyloid beta precursor protein). Mostly found in the extracellular space with a proportion occurring as membrane-bound species. Influences synaptic plasticity through various receptors, mediates dendritic spine loss leading to decreased synapse density, inhibits long-term potentiation (LTP) and enhances long-term depression (LTD). Soluble multimeric form is the main pathogenic species linked to Alzheimer's disease. tmpzr1t_l9r_go_relaxed.owl amyloid-beta protein 40/42 complex|amyloid-beta protein 42 complex|beta-amyloid complex|heterodimer of amyloid beta protein|amyloid beta trimer|ADDL complex|betaA complex|heterotrimer of amyloid beta protein|amyloid beta heterodimer|amyloid-beta protein 40 complex|amyloid beta heterooligomer|homodimer of amyloid beta protein|amyloid beta oligomer|beta amyloid complex|amyloid beta heterotrimer|amyloid beta dimer|Abeta-derived diffusible ligand complex|amyloid beta homooligomer|homotrimer of amyloid beta protein|Abeta complex|amyloid beta homotrimer|heterooligomer of amyloid beta protein|amyloid beta homodimer|homooligomer of amyloid beta protein|amyloid beta complex An example is Protein 40 of APP (P05067-PRO_0000000093) in PMID:18568035 (inferred by direct assay). hjd 2017-03-15T19:19:29Z cellular_component owl:Class GO:0140057 biolink:NamedThing vacuole-mitochondria membrane tethering The attachment of a mitochondrial membrane to a vacuolar membrane via molecular tethers that physically bridge their respective membranes and attach them to each other. The tethering may facilitate exchange of metabolites between the organelles. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-27T10:31:12Z biological_process owl:Class GO:0140056 biolink:NamedThing organelle localization by membrane tethering The process by which an organelle membrane interacts with another membrane via molecular tethers that physically bridge the two membranes and attach them to each other. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-27T09:58:51Z biological_process owl:Class GO:1904051 biolink:NamedThing regulation of protein targeting to vacuole involved in autophagy Any process that modulates the frequency, rate or extent of protein targeting to vacuole involved in autophagy. tmpzr1t_l9r_go_relaxed.owl An example of this is SMURF1 in human (UniProt symbol Q9HCE7) in PMID:22020285 (inferred from mutant phenotype). pad 2015-03-17T13:54:16Z biological_process owl:Class GO:0051998 biolink:NamedThing protein carboxyl O-methyltransferase activity Catalysis of the transfer of a methyl group to a carboxyl group on a protein. tmpzr1t_l9r_go_relaxed.owl protein carboxyl methyltransferase activity ai 2010-07-20T09:23:00Z molecular_function owl:Class GO:0008276 biolink:NamedThing protein methyltransferase activity Catalysis of the transfer of a methyl group (CH3-) to a protein. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9632182 molecular_function owl:Class GO:0005916 biolink:NamedThing fascia adherens A cell-cell junction that contains the transmembrane protein N-cadherin, which interacts with identical molecules from neighbouring cells to form a tight mechanical intercellular link; forms a large portion of the intercalated disc, the structure at which myofibrils terminate in cardiomyocytes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Fascia_adherens cellular_component owl:Class GO:0005911 biolink:NamedThing cell-cell junction A cell junction that forms a connection between two or more cells of an organism; excludes direct cytoplasmic intercellular bridges, such as ring canals in insects. tmpzr1t_l9r_go_relaxed.owl cell-cell contact region|cell-cell contact zone|intercellular junction https://github.com/geneontology/go-ontology/issues/22122 NIF_Subcellular:sao1922892319 cellular_component owl:Class GO:0102249 biolink:NamedThing phosphatidylcholine:diacylglycerol cholinephosphotransferase activity Catalysis of the reaction: a phosphatidylcholine + a 1,2-diacyl-sn-glycerol = a 1,2-diacyl-sn-glycerol + a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12386 molecular_function owl:Class GO:0016780 biolink:NamedThing phosphotransferase activity, for other substituted phosphate groups Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-163069|Reactome:R-HSA-162742|EC:2.7.8.- molecular_function owl:Class GO:1900590 biolink:NamedThing violaceol I biosynthetic process The chemical reactions and pathways resulting in the formation of violaceol I. tmpzr1t_l9r_go_relaxed.owl violaceol I anabolism|violaceol I formation|violaceol I biosynthesis|violaceol I synthesis di 2012-05-15T06:51:16Z biological_process owl:Class GO:1901503 biolink:NamedThing ether biosynthetic process The chemical reactions and pathways resulting in the formation of ether. tmpzr1t_l9r_go_relaxed.owl ether synthesis|ether formation|ether biosynthesis|ether anabolism pr 2012-10-17T09:42:47Z biological_process owl:Class GO:0006684 biolink:NamedThing sphingomyelin metabolic process The chemical reactions and pathways involving sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine, any of a class of phospholipids in which the amino group of sphingosine is in amide linkage with one of several fatty acids, while the terminal hydroxyl group of sphingosine is esterified to phosphorylcholine. tmpzr1t_l9r_go_relaxed.owl sphingomyelin metabolism biological_process owl:Class GO:0006665 biolink:NamedThing sphingolipid metabolic process The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl sphingolipid metabolism biological_process owl:Class GO:0006414 biolink:NamedThing translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. tmpzr1t_l9r_go_relaxed.owl translation elongation|protein synthesis elongation GO:0006442|GO:0006455 biological_process owl:Class GO:0034645 biolink:NamedThing cellular macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular macromolecule biosynthesis|cellular biopolymer biosynthetic process|cellular macromolecule formation|cellular macromolecule synthesis|cellular macromolecule anabolism GO:0034961 biological_process owl:Class GO:0006208 biolink:NamedThing pyrimidine nucleobase catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. tmpzr1t_l9r_go_relaxed.owl pyrimidine base catabolism|pyrimidine base breakdown|pyrimidine base degradation|pyrimidine base catabolic process biological_process owl:Class GO:0006206 biolink:NamedThing pyrimidine nucleobase metabolic process The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. tmpzr1t_l9r_go_relaxed.owl pyrimidine metabolic process|pyrimidine base metabolism|pyrimidine base metabolic process|pyrimidine metabolism biological_process owl:Class GO:1902081 biolink:NamedThing negative regulation of calcium ion import into sarcoplasmic reticulum Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion import into sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl inhibition of calcium ion import into sarcoplasmic reticulum|downregulation of calcium ion import into sarcoplasmic reticulum|down-regulation of calcium ion import into sarcoplasmic reticulum|down regulation of calcium ion import into sarcoplasmic reticulum rl 2013-04-24T16:07:59Z biological_process owl:Class GO:0090281 biolink:NamedThing negative regulation of calcium ion import Any process that decreases the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl negative regulation of transmembrane calcium influx tb 2010-02-08T05:11:20Z biological_process owl:Class GO:1900551 biolink:NamedThing N',N'',N'''-triacetylfusarinine C biosynthetic process The chemical reactions and pathways resulting in the formation of N',N'',N'''-triacetylfusarinine C. tmpzr1t_l9r_go_relaxed.owl N',N'',N'''-triacetylfusarinine C synthesis|N',N'',N'''-triacetylfusarinine C formation|N',N'',N'''-triacetylfusarinine C biosynthesis|N',N'',N'''-triacetylfusarinine C anabolism di 2012-05-15T01:00:58Z biological_process owl:Class GO:1901566 biolink:NamedThing organonitrogen compound biosynthetic process The chemical reactions and pathways resulting in the formation of organonitrogen compound. tmpzr1t_l9r_go_relaxed.owl organonitrogen compound anabolism|organonitrogen compound formation|organonitrogen compound biosynthesis|organonitrogen compound synthesis pr 2012-11-04T15:18:00Z biological_process owl:Class GO:0032076 biolink:NamedThing negative regulation of deoxyribonuclease activity Any process that stops or reduces the rate of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid. tmpzr1t_l9r_go_relaxed.owl inhibition of deoxyribonuclease activity|down regulation of deoxyribonuclease activity|deoxyribonuclease inhibitor|down-regulation of deoxyribonuclease activity|downregulation of deoxyribonuclease activity|DNase inhibitor biological_process owl:Class GO:0032070 biolink:NamedThing regulation of deoxyribonuclease activity Any process that modulates the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid. tmpzr1t_l9r_go_relaxed.owl deoxyribonuclease regulator|DNase regulator biological_process owl:Class GO:0001964 biolink:NamedThing startle response An action or movement due to the application of a sudden unexpected stimulus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Startle_reaction biological_process owl:Class GO:0009605 biolink:NamedThing response to external stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. tmpzr1t_l9r_go_relaxed.owl response to environmental stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0046611 biolink:NamedThing lysosomal proton-transporting V-type ATPase complex A proton-transporting two-sector ATPase complex found in the lysosomal membrane, where it acts as a proton pump to mediate acidification of the lysosomal lumen. tmpzr1t_l9r_go_relaxed.owl lysosomal membrane hydrogen-transporting ATPase|lysosomal hydrogen-translocating V-type ATPase complex cellular_component owl:Class GO:0016471 biolink:NamedThing vacuolar proton-transporting V-type ATPase complex A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen. tmpzr1t_l9r_go_relaxed.owl vacuolar hydrogen-translocating V-type ATPase complex See also the cellular component terms 'vacuolar proton-transporting V-type ATPase, V1 domain ; GO:0000221' and 'vacuolar proton-transporting V-type ATPase, V0 domain ; GO:0000220' and the molecular function term 'hydrogen ion transporting ATPase activity, rotational mechanism ; GO:0046961'. cellular_component owl:Class GO:1901672 biolink:NamedThing positive regulation of systemic acquired resistance Any process that activates or increases the frequency, rate or extent of systemic acquired resistance. tmpzr1t_l9r_go_relaxed.owl activation of systemic acquired resistance|upregulation of systemic acquired resistance|positive regulation of salicylic acid-dependent systemic resistance|upregulation of salicylic acid-dependent systemic resistance|up regulation of systemic acquired resistance|up-regulation of salicylic acid-dependent systemic resistance|up-regulation of systemic acquired resistance|up regulation of salicylic acid-dependent systemic resistance|activation of salicylic acid-dependent systemic resistance tb 2012-11-21T22:03:58Z biological_process owl:Class GO:0032103 biolink:NamedThing positive regulation of response to external stimulus Any process that activates, maintains or increases the rate of a response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of response to external stimulus|activation of response to external stimulus|up-regulation of response to external stimulus|stimulation of response to external stimulus|upregulation of response to external stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0060981 biolink:NamedThing cell migration involved in coronary angiogenesis The orderly movement of a cell from one site to another that will contribute to the formation of new blood vessels in the heart from pre-existing blood vessels. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T02:49:12Z biological_process owl:Class GO:0060973 biolink:NamedThing cell migration involved in heart development The orderly movement of a cell from one site to another that will contribute to the progression of the heart over time, from its initial formation, to the mature organ. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T10:53:49Z biological_process owl:Class GO:0071359 biolink:NamedThing cellular response to dsRNA Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to double-stranded RNA mah 2009-12-11T03:00:32Z biological_process owl:Class GO:0071407 biolink:NamedThing cellular response to organic cyclic compound Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to organic cyclic substance mah 2009-12-14T02:55:58Z biological_process owl:Class GO:0008523 biolink:NamedThing sodium-dependent multivitamin transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: multivitamin(out) + Na+(out) = multivitamin(in) + Na+(in). Multivitamins include pantothenate, biotin and lipoate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-199219|Reactome:R-HSA-429581|Reactome:R-HSA-199206 molecular_function owl:Class GO:0090482 biolink:NamedThing vitamin transmembrane transporter activity Enables the transfer of a vitamin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl vitamin transporter activity|vitamin or cofactor transporter activity tb 2012-10-02T16:50:50Z GO:0051183 molecular_function owl:Class GO:0030758 biolink:NamedThing 3,7-dimethylquercitin 4'-O-methyltransferase activity Catalysis of the reaction: 3',4',5-trihydroxy-3,7-dimethoxyflavone + S-adenosyl-L-methionine(1+) = 3',5-dihydroxy-3,4',7-trimethoxyflavone + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:3',4',5-trihydroxy-3,7-dimethoxyflavone 4'-O-methyltransferase activity|S-adenosyl-L-methionine:5,3',4'-trihydroxy-3,7-dimethoxyflavone 4'-O-methyltransferase activity|3,7-dimethylquercetin 4'-O-methyltransferase activity|flavonol 4'-methyltransferase activity|flavonol 4'-O-methyltransferase activity|4'-OMT activity RHEA:21832|KEGG_REACTION:R03456|MetaCyc:2.1.1.83-RXN|EC:2.1.1.83 molecular_function owl:Class GO:0008757 biolink:NamedThing S-adenosylmethionine-dependent methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl methionine-dependent methyltransferase activity|SAM-dependent methyltransferase activity molecular_function owl:Class GO:0098005 biolink:NamedThing viral head-tail joining Process by which virus heads and tails are attached to each other. tmpzr1t_l9r_go_relaxed.owl virus head-tail joining|phage head tail joining bm 2012-07-18T16:11:59Z biological_process owl:Class GO:0016032 biolink:NamedThing viral process A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle. tmpzr1t_l9r_go_relaxed.owl virus process|virulence|viral infection Wikipedia:Viral_life_cycle See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'. GO:0022415 biological_process owl:Class GO:0008103 biolink:NamedThing oocyte microtubule cytoskeleton polarization Establishment and maintenance of a specific axis of polarity of the oocyte microtubule network. The axis is set so that the minus and plus ends of the microtubules of the mid stage oocyte are positioned along the anterior cortex and at the posterior pole, respectively. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl GO:0048129 biological_process owl:Class GO:0007017 biolink:NamedThing microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031692 biolink:NamedThing alpha-1B adrenergic receptor binding Binding to an alpha-1B adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-1B adrenergic receptor ligand molecular_function owl:Class GO:0031690 biolink:NamedThing adrenergic receptor binding Binding to an adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl adrenergic receptor ligand molecular_function owl:Class GO:0033343 biolink:NamedThing positive regulation of collagen binding Any process that activates or increases the frequency, rate or extent of collagen binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of collagen binding|activation of collagen binding|upregulation of collagen binding|stimulation of collagen binding|up regulation of collagen binding biological_process owl:Class GO:0033341 biolink:NamedThing regulation of collagen binding Any process that modulates the frequency, rate or extent of collagen binding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900815 biolink:NamedThing monodictyphenone biosynthetic process The chemical reactions and pathways resulting in the formation of monodictyphenone. tmpzr1t_l9r_go_relaxed.owl monodictyphenone synthesis|monodictyphenone formation|monodictyphenone anabolism|monodictyphenone biosynthesis di 2012-06-04T10:11:35Z biological_process owl:Class GO:0016053 biolink:NamedThing organic acid biosynthetic process The chemical reactions and pathways resulting in the formation of organic acids, any acidic compound containing carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl organic acid synthesis|organic acid biosynthesis|organic acid anabolism|organic acid formation biological_process owl:Class GO:1901173 biolink:NamedThing phytoene catabolic process The chemical reactions and pathways resulting in the breakdown of phytoene. tmpzr1t_l9r_go_relaxed.owl phytoene catabolism|phytoene breakdown|phytoene degradation yaf 2012-07-19T09:48:07Z biological_process owl:Class GO:1901172 biolink:NamedThing phytoene metabolic process The chemical reactions and pathways involving phytoene. tmpzr1t_l9r_go_relaxed.owl phytoene metabolism yaf 2012-07-19T09:47:46Z biological_process owl:Class GO:2000863 biolink:NamedThing positive regulation of estrogen secretion Any process that activates or increases the frequency, rate or extent of estrogen secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of oestrogen secretion bf 2011-07-26T08:48:31Z biological_process owl:Class GO:2000861 biolink:NamedThing regulation of estrogen secretion Any process that modulates the frequency, rate or extent of estrogen secretion. tmpzr1t_l9r_go_relaxed.owl regulation of oestrogen secretion bf 2011-07-26T08:48:24Z biological_process owl:Class GO:0045115 biolink:NamedThing regulation of beta 2 integrin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta 2 integrins. tmpzr1t_l9r_go_relaxed.owl regulation of beta 2 integrin synthesis|regulation of beta 2 integrin anabolism|regulation of beta 2 integrin biosynthesis|regulation of beta 2 integrin formation biological_process owl:Class GO:0008187 biolink:NamedThing poly-pyrimidine tract binding Binding to a stretch of pyrimidines (cytosine or uracil) in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003727 biolink:NamedThing single-stranded RNA binding Binding to single-stranded RNA. tmpzr1t_l9r_go_relaxed.owl ssRNA binding GO:0003728 molecular_function owl:Class GO:0030656 biolink:NamedThing regulation of vitamin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl regulation of vitamin metabolism biological_process owl:Class GO:0061708 biolink:NamedThing tRNA-5-taurinomethyluridine 2-sulfurtransferase Catalysis of 5-taurinomethyluridine in tRNA + a [protein]-S-sulfanylcysteine + ATP + a reduced electron acceptor = a 5-taurinomethyl-2-thiouridine in tRNA + a [protein]-L-cysteine + AMP + an oxidized electron acceptor + diphosphate + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:47040|Reactome:R-HSA-6787447|MetaCyc:RXN-16821 dph 2015-06-16T09:02:23Z molecular_function owl:Class GO:0016783 biolink:NamedThing sulfurtransferase activity Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl tRNA sulfurtransferase activity|sulphurtransferase activity Reactome:R-HSA-6782264|EC:2.8.1.-|Reactome:R-HSA-947538|Reactome:R-HSA-1614618 molecular_function owl:Class GO:1900149 biolink:NamedThing positive regulation of Schwann cell migration Any process that activates or increases the frequency, rate or extent of Schwann cell migration. tmpzr1t_l9r_go_relaxed.owl upregulation of Schwann cell migration|up-regulation of Schwann cell migration|activation of Schwann cell migration|up regulation of Schwann cell migration bf 2012-03-06T04:14:58Z biological_process owl:Class GO:1900147 biolink:NamedThing regulation of Schwann cell migration Any process that modulates the frequency, rate or extent of Schwann cell migration. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-06T04:14:50Z biological_process owl:Class GO:1904881 biolink:NamedThing cellular response to hydrogen sulfide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen sulfide stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to sulfane|cellular response to dihydridosulfur sl 2016-01-04T23:56:35Z biological_process owl:Class GO:0070887 biolink:NamedThing cellular response to chemical stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. mah 2009-08-27T04:41:45Z biological_process owl:Class GO:2000850 biolink:NamedThing negative regulation of glucocorticoid secretion Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:44:48Z biological_process owl:Class GO:1900553 biolink:NamedThing asperfuranone catabolic process The chemical reactions and pathways resulting in the breakdown of asperfuranone. tmpzr1t_l9r_go_relaxed.owl asperfuranone degradation|asperfuranone breakdown|asperfuranone catabolism di 2012-05-15T01:31:35Z biological_process owl:Class GO:1901361 biolink:NamedThing organic cyclic compound catabolic process The chemical reactions and pathways resulting in the breakdown of organic cyclic compound. tmpzr1t_l9r_go_relaxed.owl organic cyclic compound breakdown|organic cyclic compound catabolism|organic cyclic compound degradation bf 2012-09-14T09:05:04Z biological_process owl:Class GO:0014733 biolink:NamedThing regulation of skeletal muscle adaptation Any process in which skeletal muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal muscle plasticity biological_process owl:Class GO:0072184 biolink:NamedThing renal vesicle progenitor cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the renal vesicle progenitor cells of the kidney as it progresses from its formation to the mature state. A renal vesicle progenitor cell is a cell that will give rise to terminally differentiated cells of the renal vesicle without self-renewing. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:52:54Z biological_process owl:Class GO:0061005 biolink:NamedThing cell differentiation involved in kidney development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-21T09:13:55Z biological_process owl:Class GO:1905086 biolink:NamedThing negative regulation of bioluminescence Any process that stops, prevents or reduces the frequency, rate or extent of bioluminescence. tmpzr1t_l9r_go_relaxed.owl down regulation of bioluminescence|down-regulation of bioluminescence|downregulation of bioluminescence|inhibition of bioluminescence rph 2016-03-29T07:51:17Z biological_process owl:Class GO:0031324 biolink:NamedThing negative regulation of cellular metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular metabolic process|down-regulation of cellular metabolic process|downregulation of cellular metabolic process|inhibition of cellular metabolic process|negative regulation of cellular metabolism biological_process owl:Class GO:0018212 biolink:NamedThing peptidyl-tyrosine modification The modification of peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018193 biolink:NamedThing peptidyl-amino acid modification The alteration of an amino acid residue in a peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055019 biolink:NamedThing negative regulation of cardiac muscle fiber development Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle fiber development. tmpzr1t_l9r_go_relaxed.owl inhibition of cardiac muscle fiber development|negative regulation of heart muscle fiber development|negative regulation of cardiac muscle fibre development|downregulation of cardiac muscle fiber development|down-regulation of cardiac muscle fiber development|down regulation of cardiac muscle fiber development biological_process owl:Class GO:0055018 biolink:NamedThing regulation of cardiac muscle fiber development Any process that modulates the frequency, rate or extent of cardiac muscle fiber development. tmpzr1t_l9r_go_relaxed.owl regulation of heart muscle fiber development|regulation of cardiac muscle fibre development biological_process owl:Class GO:0000978 biolink:NamedThing RNA polymerase II cis-regulatory region sequence-specific DNA binding Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II distal enhancer sequence-specific DNA binding|RNA polymerase II promoter proximal region sequence-specific DNA binding|RNA polymerase II proximal promoter sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II upstream activating sequence (UAS) sequence-specific DNA binding Note that the phrase "upstream activating sequence", or UAS is often used in S. cerevisiae literature to refer to cis-regulatory sequences. In bacteria such as E. coli, the phrase "upstream activating sequence", or UAS is usually a synonym for "enhancer". krc 2010-08-10T02:17:19Z GO:0000980 molecular_function owl:Class GO:0000987 biolink:NamedThing cis-regulatory region sequence-specific DNA binding Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by some RNA polymerase. The proximal promoter is in cis with and relatively close to the core promoter. tmpzr1t_l9r_go_relaxed.owl bacterial-type RNA polymerase enhancer sequence-specific DNA binding|proximal promoter sequence-specific DNA binding|bacterial-type proximal promoter sequence-specific DNA binding|eubacterial-type RNA polymerase regulatory transcription factor sequence-specific DNA binding|core promoter proximal region DNA binding|bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding|cis-regulatory region binding|promoter proximal region sequence-specific DNA binding|core promoter proximal region sequence-specific DNA binding|bacterial-type cis-regulatory region sequence-specific DNA binding|enhancer sequence-specific DNA binding|bacterial-type RNA polymerase upstream activating sequence (UAS) sequence-specific DNA binding|enhancer binding bf 2010-02-26T10:17:00Z GO:0001150|GO:0000986|GO:0001158|GO:0001159|GO:0035326 molecular_function owl:Class GO:1905698 biolink:NamedThing positive regulation of polysome binding Any process that activates or increases the frequency, rate or extent of polysome binding. tmpzr1t_l9r_go_relaxed.owl activation of polyribosome binding|up-regulation of polyribosome binding|up regulation of polysome binding|up-regulation of polysome binding|upregulation of polyribosome binding|positive regulation of polyribosome binding|activation of polysome binding|upregulation of polysome binding|up regulation of polyribosome binding bc 2016-11-14T23:26:37Z biological_process owl:Class GO:1905696 biolink:NamedThing regulation of polysome binding Any process that modulates the frequency, rate or extent of polysome binding. tmpzr1t_l9r_go_relaxed.owl regulation of polyribosome binding bc 2016-11-14T23:26:22Z biological_process owl:Class GO:1990611 biolink:NamedThing regulation of cytoplasmic translational initiation in response to stress Modulation of the frequency, rate or extent of cytoplasmic translational initiation as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl vw 2015-01-20T13:04:14Z biological_process owl:Class GO:1990497 biolink:NamedThing regulation of cytoplasmic translation in response to stress Modulation of the frequency, rate or extent of cytoplasmic translation as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl vw 2014-09-26T11:11:29Z biological_process owl:Class GO:0003251 biolink:NamedThing positive regulation of cell proliferation involved in heart valve morphogenesis Any process that increases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T02:07:20Z biological_process owl:Class GO:1904869 biolink:NamedThing regulation of protein localization to Cajal body Any process that modulates the frequency, rate or extent of protein localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to Cajal body|regulation of protein localisation in Cajal body|regulation of protein localization in Cajal body nc 2015-12-18T11:17:31Z biological_process owl:Class GO:1900180 biolink:NamedThing regulation of protein localization to nucleus Any process that modulates the frequency, rate or extent of protein localization to nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in cell nucleus|regulation of protein localization in nucleus|regulation of protein localisation to nucleus bf 2012-03-12T01:23:44Z biological_process owl:Class GO:0047100 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity Catalysis of the reaction: phosphate + NADP+ + glyceraldehyde-3-phosphate = NADPH + 3-phospho-D-glyceroyl-phosphate. tmpzr1t_l9r_go_relaxed.owl NADP-dependent glyceraldehyde phosphate dehydrogenase activity|triosephosphate dehydrogenase (NADP+) activity|triosephosphate dehydrogenase (NADP(+)) activity|glyceraldehyde phosphate dehydrogenase (nicotinamide adenine dinucleotide phosphate) (phosphorylating)|triosephosphate dehydrogenase (NADP)|NADP-triose phosphate dehydrogenase activity|dehydrogenase, glyceraldehyde phosphate (nicotinamide adenine dinucleotide phosphate) (phosphorylating)|D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase (phosphorylating)|NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity EC:1.2.1.13|RHEA:10296|MetaCyc:1.2.1.13-RXN molecular_function owl:Class GO:0043891 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD(P)+ = 3-phospho-D-glyceroyl phosphate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) (phosphorylating)|NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase activity|triosephosphate dehydrogenase (NAD(P))|D-glyceraldehyde 3-phosphate:NAD(P)+ oxidoreductase (phosphorylating)|triosephosphate dehydrogenase (NAD(P)+) MetaCyc:GAPDHSYNEC-RXN|EC:1.2.1.59 molecular_function owl:Class GO:0072227 biolink:NamedThing metanephric macula densa development The process whose specific outcome is the progression of the metanephric macula densa over time, from its formation to the mature structure. The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:37:26Z biological_process owl:Class GO:0072024 biolink:NamedThing macula densa development The process whose specific outcome is the progression of the macula densa over time, from its formation to the mature structure. The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:40:15Z biological_process owl:Class GO:0060757 biolink:NamedThing adult foraging behavior Behavior by which an adult locates food. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:50:56Z biological_process owl:Class GO:0060756 biolink:NamedThing foraging behavior Behavior by which an organism locates food. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:46:25Z biological_process owl:Class GO:0106397 biolink:NamedThing positive regulation of R7 cell fate commitment Any process that activates or increases the frequency, rate or extent of R7 cell fate commitment. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T19:14:40Z biological_process owl:Class GO:0010455 biolink:NamedThing positive regulation of cell fate commitment Any process that activates, maintains or increases the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033244 biolink:NamedThing regulation of penicillin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl regulation of penicillin metabolism biological_process owl:Class GO:0034248 biolink:NamedThing regulation of cellular amide metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amides. tmpzr1t_l9r_go_relaxed.owl regulation of amide metabolism biological_process owl:Class GO:0043480 biolink:NamedThing pigment accumulation in tissues The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl organismal pigment accumulation biological_process owl:Class GO:0032501 biolink:NamedThing multicellular organismal process Any biological process, occurring at the level of a multicellular organism, pertinent to its function. tmpzr1t_l9r_go_relaxed.owl single-multicellular organism process|organismal physiological process jl 2012-09-19T16:07:47Z GO:0050874|GO:0044707 biological_process owl:Class GO:0031969 biolink:NamedThing chloroplast membrane Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chloroplast_membrane cellular_component owl:Class GO:0042170 biolink:NamedThing plastid membrane Either of the lipid bilayers that surround a plastid and form the plastid envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051321 biolink:NamedThing meiotic cell cycle Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. tmpzr1t_l9r_go_relaxed.owl meiosis Wikipedia:Meiosis Note that this term should not be confused with 'GO:0140013 ; meiotic nuclear division'. 'GO:0051321 ; meiotic cell cycle represents the entire mitotic cell cycle, while 'GO:0140013 meiotic nuclear division' specifically represents the actual nuclear division step of the mitotic cell cycle. GO:0007126 biological_process owl:Class GO:0022414 biolink:NamedThing reproductive process A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. tmpzr1t_l9r_go_relaxed.owl single organism reproductive process jl 2012-09-19T15:56:06Z GO:0044702 biological_process owl:Class GO:0021552 biolink:NamedThing midbrain-hindbrain boundary structural organization The process that contributes to the act of creating the structural organization of the midbrain-hindbrain boundary structure. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl midbrain-hindbrain boundary structural organisation|isthmus structural organization|MHB structural organization biological_process owl:Class GO:0048532 biolink:NamedThing anatomical structure arrangement The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl organization of an anatomical structure|structural organization|anatomical structure organization|anatomical structure structural organization biological_process owl:Class GO:1903343 biolink:NamedThing positive regulation of meiotic DNA double-strand break formation Any process that activates or increases the frequency, rate or extent of meiotic DNA double-strand break formation. tmpzr1t_l9r_go_relaxed.owl activation of meiotic DNA double-strand break formation|upregulation of meiotic DNA double-strand break formation|up regulation of meiotic DNA double-strand break formation|up-regulation of meiotic DNA double-strand break formation mcc 2014-08-18T21:32:11Z biological_process owl:Class GO:0045935 biolink:NamedThing positive regulation of nucleobase-containing compound metabolic process Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism|upregulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|stimulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|activation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|up-regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|up regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process biological_process owl:Class GO:2001102 biolink:NamedThing hexasaccharide transport The directed movement of a hexasaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:20:31Z biological_process owl:Class GO:0015772 biolink:NamedThing oligosaccharide transport The directed movement of oligosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligosaccharides are molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061669 biolink:NamedThing spontaneous neurotransmitter secretion Neurotransmitter secretion that occurs in the absence of the action of a secretagogue or a presynaptic action potential. tmpzr1t_l9r_go_relaxed.owl stimulus-independent neurotransmitter secretion dph 2014-11-17T07:52:35Z biological_process owl:Class GO:0007269 biolink:NamedThing neurotransmitter secretion The regulated release of neurotransmitter from the presynapse into the synaptic cleft via calcium-regulated exocytosis during synaptic transmission. tmpzr1t_l9r_go_relaxed.owl neurotransmitter release|neurotransmitter secretory pathway A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma-aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin. GO:0010554 biological_process owl:Class GO:2000335 biolink:NamedThing regulation of endothelial microparticle formation Any process that modulates the frequency, rate or extent of endothelial microparticle formation. tmpzr1t_l9r_go_relaxed.owl regulation of endothelial microparticle generation|regulation of endothelial microparticle release mah 2011-01-31T11:20:26Z biological_process owl:Class GO:0071616 biolink:NamedThing acyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. tmpzr1t_l9r_go_relaxed.owl acyl-CoA synthesis|acyl-CoA biosynthesis|acyl-CoA formation|acyl-CoA anabolism mah 2010-02-08T04:43:31Z biological_process owl:Class GO:0006637 biolink:NamedThing acyl-CoA metabolic process The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. tmpzr1t_l9r_go_relaxed.owl acyl-CoA metabolism biological_process owl:Class GO:0055044 biolink:NamedThing symplast The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Symplast cellular_component owl:Class GO:0110165 biolink:NamedThing cellular anatomical entity A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T18:01:37Z cellular_component owl:Class GO:0033497 biolink:NamedThing sinapate biosynthetic process The chemical reactions and pathways resulting in the formation of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl sinapate biosynthesis|sinapate formation|sinapate synthesis|sinapate anabolism MetaCyc:PWY-5168 biological_process owl:Class GO:0072330 biolink:NamedThing monocarboxylic acid biosynthetic process The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. tmpzr1t_l9r_go_relaxed.owl monocarboxylic acid synthesis|monocarboxylic acid biosynthesis|monocarboxylic acid formation|monocarboxylic acid anabolism mah 2010-11-02T04:51:32Z biological_process owl:Class GO:0030955 biolink:NamedThing potassium ion binding Binding to a potassium ion (K+). tmpzr1t_l9r_go_relaxed.owl K ion binding molecular_function owl:Class GO:0031420 biolink:NamedThing alkali metal ion binding Binding to an alkali metal ion; alkali metals are those elements in group Ia of the periodic table, with the exception of hydrogen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045723 biolink:NamedThing positive regulation of fatty acid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids. tmpzr1t_l9r_go_relaxed.owl positive regulation of fatty acid biosynthesis|activation of fatty acid biosynthetic process|up regulation of fatty acid biosynthetic process|positive regulation of fatty acid formation|up-regulation of fatty acid biosynthetic process|positive regulation of fatty acid synthesis|upregulation of fatty acid biosynthetic process|positive regulation of fatty acid anabolism|stimulation of fatty acid biosynthetic process biological_process owl:Class GO:0045923 biolink:NamedThing positive regulation of fatty acid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving fatty acids. tmpzr1t_l9r_go_relaxed.owl positive regulation of fatty acid metabolism|activation of fatty acid metabolic process|upregulation of fatty acid metabolic process|up regulation of fatty acid metabolic process|up-regulation of fatty acid metabolic process|stimulation of fatty acid metabolic process biological_process owl:Class GO:0045949 biolink:NamedThing positive regulation of phosphorus utilization Any process that activates or increases the frequency, rate or extent of phosphorus utilization. tmpzr1t_l9r_go_relaxed.owl up-regulation of phosphorus utilization|up regulation of phosphorus utilization|stimulation of phosphorus utilization|upregulation of phosphorus utilization|activation of phosphorus utilization biological_process owl:Class GO:0002223 biolink:NamedThing stimulatory C-type lectin receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation. tmpzr1t_l9r_go_relaxed.owl stimulatory C-type lectin receptor signalling pathway|stimulatory Ly49 family receptor signaling pathway biological_process owl:Class GO:0002220 biolink:NamedThing innate immune response activating cell surface receptor signaling pathway Any series of molecular signals leading to activation of the innate immune response generated as a consequence of binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl innate immune response activating cell surface receptor signalling pathway|activation of innate immune response by cell surface receptor signaling pathway biological_process owl:Class GO:1900270 biolink:NamedThing positive regulation of reverse transcription Any process that activates or increases the frequency, rate or extent of reverse transcription. tmpzr1t_l9r_go_relaxed.owl activation of reverse transcription|upregulation of reverse transcription|up-regulation of reverse transcription|up regulation of reverse transcription tb 2012-04-03T11:13:43Z biological_process owl:Class GO:1900268 biolink:NamedThing regulation of reverse transcription Any process that modulates the frequency, rate or extent of reverse transcription. tmpzr1t_l9r_go_relaxed.owl tb 2012-04-03T11:13:26Z biological_process owl:Class GO:1901300 biolink:NamedThing positive regulation of hydrogen peroxide-mediated programmed cell death Any process that activates or increases the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death. tmpzr1t_l9r_go_relaxed.owl activation of hydrogen peroxide-mediated programmed cell death|upregulation of hydrogen peroxide-mediated programmed cell death|up regulation of hydrogen peroxide-mediated programmed cell death|up-regulation of hydrogen peroxide-mediated programmed cell death vk 2012-08-21T09:45:29Z biological_process owl:Class GO:0043068 biolink:NamedThing positive regulation of programmed cell death Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. tmpzr1t_l9r_go_relaxed.owl activation of programmed cell death|stimulation of programmed cell death|upregulation of programmed cell death|up-regulation of programmed cell death|up regulation of programmed cell death|positive regulation of non-apoptotic programmed cell death GO:0043071 biological_process owl:Class GO:0009505 biolink:NamedThing plant-type cell wall A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall|plant cell wall cellular_component owl:Class GO:0005618 biolink:NamedThing cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21669 Wikipedia:Cell_wall Not to be used for manual annotation. Please choose a more specific term: for bacteria, annotate to GO:0009274; peptidoglycan-based cell wall, for plants: annotate to GO:0009505 ; plant-type cell wall, for fungi: GO:0009277 ; fungal-type cell wall, and for archae, use GO:0030115 S-layer (see PMID:31214995). cellular_component owl:Class GO:0009710 biolink:NamedThing tropane alkaloid biosynthetic process The chemical reactions and pathways resulting in the breakdown of tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system. tmpzr1t_l9r_go_relaxed.owl tropane alkaloid anabolism|tropane alkaloid biosynthesis|tropane alkaloid synthesis|tropane alkaloid formation biological_process owl:Class GO:1901362 biolink:NamedThing organic cyclic compound biosynthetic process The chemical reactions and pathways resulting in the formation of organic cyclic compound. tmpzr1t_l9r_go_relaxed.owl organic cyclic compound biosynthesis|organic cyclic compound formation|organic cyclic compound anabolism|organic cyclic compound synthesis bf 2012-09-14T09:05:22Z biological_process owl:Class GO:0045836 biolink:NamedThing positive regulation of meiotic nuclear division Any process that activates or increases the frequency, rate or extent of meiosis. tmpzr1t_l9r_go_relaxed.owl up-regulation of meiosis|stimulation of meiosis|activation of meiosis|upregulation of meiosis|positive regulation of meiosis|up regulation of meiosis biological_process owl:Class GO:0051446 biolink:NamedThing positive regulation of meiotic cell cycle Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl upregulation of progression through meiotic cell cycle|stimulation of progression through meiotic cell cycle|positive regulation of progression through meiotic cell cycle|positive regulation of meiotic cell cycle progression|activation of progression through meiotic cell cycle|up regulation of progression through meiotic cell cycle|up-regulation of progression through meiotic cell cycle biological_process owl:Class GO:0060668 biolink:NamedThing regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling Any process that modulates the rate, frequency, or extent of salivary gland branching as a result of the transfer of information from the extracellular matrix to the epithelium of the salivary gland. tmpzr1t_l9r_go_relaxed.owl regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signalling dph 2009-06-01T09:47:56Z biological_process owl:Class GO:0060693 biolink:NamedThing regulation of branching involved in salivary gland morphogenesis Any process that modulates the rate, frequency, or extent of branching morphogenesis in the salivary gland epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T01:14:44Z biological_process owl:Class GO:0019460 biolink:NamedThing glutamine catabolic process to fumarate The chemical reactions and pathways resulting in the breakdown of glutamine into other compounds, including fumarate. tmpzr1t_l9r_go_relaxed.owl glutamine breakdown to fumarate|glutamine degradation to fumarate|glutamate catabolic process to fumarate biological_process owl:Class GO:0006543 biolink:NamedThing glutamine catabolic process The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl glutamine catabolism|glutamine breakdown|glutamine degradation biological_process owl:Class GO:0062091 biolink:NamedThing Ycf2/FtsHi complex A protein complex located in the chloroplast inner membrane and facing the stroma that is associated with the chloroplast inner membrane translocase complex and provides the ATPase motor activity to drive import of proteins into the chloroplast stroma. tmpzr1t_l9r_go_relaxed.owl TIC complex associated chloroplast protein import motor dph 2018-11-08T20:06:11Z cellular_component owl:Class GO:1904949 biolink:NamedThing ATPase complex A protein complex which is capable of ATPase activity. tmpzr1t_l9r_go_relaxed.owl VPS4 complex An example of this is VPS4 in Saccharomyces cerevisiae (UniProt ID P52917) in PMID:9606181 (inferred from direct assay). bhm 2016-02-04T22:13:32Z cellular_component owl:Class GO:0007131 biolink:NamedThing reciprocal meiotic recombination The cell cycle process in which double strand breaks are formed and repaired through a single or double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. tmpzr1t_l9r_go_relaxed.owl gene conversion with reciprocal crossover|female meiotic recombination GO:0007145|GO:0000021 biological_process owl:Class GO:0140527 biolink:NamedThing reciprocal homologous recombination A DNA recombination process that results in the bidirectional exchange of genetic material between highly homologous DNA molecules. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18777 pg 2020-09-29T15:08:11Z biological_process owl:Class GO:0019510 biolink:NamedThing S-adenosylhomocysteine catabolic process The chemical reactions and pathways resulting in the breakdown of S-adenosylhomocysteine, forming homocysteine and then methionine. tmpzr1t_l9r_go_relaxed.owl S-adenosylhomocysteine breakdown|S-adenosylhomocysteine catabolism|S-adenosylhomocysteine degradation MetaCyc:ADENOSYLHOMOCYSCAT-PWY biological_process owl:Class GO:0042219 biolink:NamedThing cellular modified amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl cellular modified amino acid degradation|cellular modified amino acid catabolism|cellular amino acid derivative degradation|amino acid derivative catabolic process|cellular amino acid derivative breakdown|cellular amino acid derivative catabolic process|modified amino acid catabolism|modified amino acid catabolic process|cellular amino acid derivative catabolism|cellular modified amino acid breakdown biological_process owl:Class GO:0110045 biolink:NamedThing negative regulation of cell cycle switching, mitotic to meiotic cell cycle Any process that stops, prevents, or reduces the frequency, rate, or extent of mitotic to meiotic cell cycle switching, the process in which a cell switches cell cycle mode from mitotic to meiotic division. tmpzr1t_l9r_go_relaxed.owl kmv 2017-08-08T21:33:28Z biological_process owl:Class GO:0110044 biolink:NamedThing regulation of cell cycle switching, mitotic to meiotic cell cycle Any process that modulates the frequency, rate, or extent of mitotic to meiotic cell cycle switching, the process in which a cell switches cell cycle mode from mitotic to meiotic division. tmpzr1t_l9r_go_relaxed.owl sexual differentiation https://github.com/geneontology/go-ontology/issues/20926 kmv 2017-08-08T21:24:45Z biological_process owl:Class GO:0120022 biolink:NamedThing glucagon family peptide binding Binding to a member of the glucagon family peptide hormone (e.g. glucagon, glucagon-like peptides, oxyntomodulin, glicentin, ADCYAP1, GHRH, secretin, VIP, GIP). tmpzr1t_l9r_go_relaxed.owl glucagon-like peptide binding|glucagon binding https://github.com/geneontology/go-ontology/issues/13143|https://github.com/geneontology/go-ontology/issues/21327 krc 2017-03-17T14:46:29Z GO:0120024 molecular_function owl:Class GO:0017046 biolink:NamedThing peptide hormone binding Binding to a peptide with hormonal activity in animals. tmpzr1t_l9r_go_relaxed.owl polypeptide hormone binding molecular_function owl:Class GO:0090153 biolink:NamedThing regulation of sphingolipid biosynthetic process Any process that modulates the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T03:25:49Z biological_process owl:Class GO:0051171 biolink:NamedThing regulation of nitrogen compound metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl regulation of nitrogen metabolic process|regulation of nitrogen metabolism biological_process owl:Class GO:0019912 biolink:NamedThing cyclin-dependent protein kinase activating kinase activity Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; increases the activity of a cyclin-dependent protein kinase (CDK). tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase activating kinase, intrinsic catalyst activity|cdk-activating kinase activity|CAK GO:0019913 molecular_function owl:Class GO:0030295 biolink:NamedThing protein kinase activator activity Binds to and increases the activity of a protein kinase, an enzyme which phosphorylates a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905465 biolink:NamedThing regulation of G-quadruplex DNA unwinding Any process that modulates the frequency, rate or extent of G-quadruplex DNA unwinding. tmpzr1t_l9r_go_relaxed.owl ans 2016-09-19T12:15:45Z biological_process owl:Class GO:0120261 biolink:NamedThing regulation of heterochromatin organization Any process that modulates the frequency, rate, extent or location of heterochromatin organization. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:00:04Z biological_process owl:Class GO:1902275 biolink:NamedThing regulation of chromatin organization Any process that modulates the frequency, rate or extent of chromatin organization. tmpzr1t_l9r_go_relaxed.owl regulation of chromatin modification|regulation of chromatin organisation|regulation of establishment or maintenance of chromatin architecture bf 2013-07-01T13:21:52Z GO:1903308 biological_process owl:Class GO:0000939 biolink:NamedThing inner kinetochore The region of a kinetochore closest to centromeric DNA; in mammals the CREST antigens (CENP proteins) are found in this layer; this layer may help define underlying centromeric chromatin structure and position of the kinetochore on the chromosome. tmpzr1t_l9r_go_relaxed.owl condensed nuclear chromosome inner kinetochore|inner kinetochore of condensed chromosome|inner kinetochore of condensed nuclear chromosome|condensed chromosome inner kinetochore|inner centromere core complex|inner kinetochore plate https://github.com/geneontology/go-ontology/issues/21126 GO:0000941 cellular_component owl:Class GO:0002763 biolink:NamedThing positive regulation of myeloid leukocyte differentiation Any process that activates or increases the frequency, rate, or extent of myeloid leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of myeloid leukocyte differentiation|up regulation of myeloid leukocyte differentiation|up-regulation of myeloid leukocyte differentiation|activation of myeloid leukocyte differentiation|stimulation of myeloid leukocyte differentiation biological_process owl:Class GO:0045639 biolink:NamedThing positive regulation of myeloid cell differentiation Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of myeloid cell differentiation|upregulation of myeloid cell differentiation|stimulation of myeloid cell differentiation|up-regulation of myeloid cell differentiation|activation of myeloid cell differentiation biological_process owl:Class GO:0002431 biolink:NamedThing Fc receptor mediated stimulatory signaling pathway A series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl Fc receptor mediated stimulatory signalling pathway|Fc-receptor mediated stimulatory signaling pathway biological_process owl:Class GO:0002429 biolink:NamedThing immune response-activating cell surface receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of a cell capable of activating or perpetuating an immune response. tmpzr1t_l9r_go_relaxed.owl activation of immune response by cell surface receptor signaling pathway|immune response-activating cell surface receptor signalling pathway biological_process owl:Class GO:0052802 biolink:NamedThing nitroimidazole metabolic process The chemical reactions and pathways involving nitroimidazoles, imidazole derivatives with a nitro group attached to one ring. tmpzr1t_l9r_go_relaxed.owl nitroimidazole metabolism biological_process owl:Class GO:0052803 biolink:NamedThing imidazole-containing compound metabolic process The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. tmpzr1t_l9r_go_relaxed.owl imidazole metabolism biological_process owl:Class GO:0043388 biolink:NamedThing positive regulation of DNA binding Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid). tmpzr1t_l9r_go_relaxed.owl stimulation of DNA binding|upregulation of DNA binding|up regulation of DNA binding|up-regulation of DNA binding|activation of DNA binding biological_process owl:Class GO:0051101 biolink:NamedThing regulation of DNA binding Any process that modulates the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901886 biolink:NamedThing 2-hydroxybenzoyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of 2-hydroxybenzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-hydroxybenzoyl-CoA catabolism|2-hydroxybenzoyl-CoA degradation|2-hydroxybenzoyl-CoA breakdown ms 2013-02-06T14:06:08Z biological_process owl:Class GO:0019336 biolink:NamedThing phenol-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. tmpzr1t_l9r_go_relaxed.owl phenol-containing compound breakdown|phenol-containing compound catabolism|phenol-containing compound degradation MetaCyc:PHENOLDEG-PWY biological_process owl:Class GO:0019498 biolink:NamedThing n-octane oxidation The chemical reactions and pathways resulting in the conversion of n-octane to octanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:P221-PWY biological_process owl:Class GO:0018939 biolink:NamedThing n-octane metabolic process The chemical reactions and pathways involving n-octane, the 8 carbon straight chain alkane used in organic syntheses, calibrations, and azeotropic distillations. It is a common component of gasoline and other petroleum products and the engine fuel antiknocking properties of an isomer of n-octane are used as a comparative standard in the Octane Rating System. tmpzr1t_l9r_go_relaxed.owl n-octane metabolism UM-BBD_pathwayID:oct biological_process owl:Class GO:1902461 biolink:NamedThing negative regulation of mesenchymal stem cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of mesenchymal stem cell proliferation|down regulation of mesenchymal stem cell proliferation|down regulation of MSC proliferation|negative regulation of MSC proliferation|inhibition of mesenchymal stem cell proliferation|downregulation of MSC proliferation|down-regulation of mesenchymal stem cell proliferation|down-regulation of MSC proliferation|inhibition of MSC proliferation pm 2013-10-22T10:01:08Z biological_process owl:Class GO:2000987 biolink:NamedThing positive regulation of behavioral fear response Any process that activates or increases the frequency, rate or extent of behavioral fear response. tmpzr1t_l9r_go_relaxed.owl positive regulation of behavioural fear response yaf 2011-08-08T09:16:39Z biological_process owl:Class GO:1901349 biolink:NamedThing glucosinolate transport The directed movement of a glucosinolate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-07T22:44:34Z biological_process owl:Class GO:0072348 biolink:NamedThing sulfur compound transport The directed movement of compounds that contain sulfur, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sulfur-containing compound transport mah 2010-11-11T11:43:56Z biological_process owl:Class GO:1900784 biolink:NamedThing fumiquinazoline F biosynthetic process The chemical reactions and pathways resulting in the formation of fumiquinazoline F. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline F anabolism|fumiquinazoline F formation|fumiquinazoline F synthesis|fumiquinazoline F biosynthesis di 2012-06-04T09:31:34Z biological_process owl:Class GO:0042435 biolink:NamedThing indole-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton. tmpzr1t_l9r_go_relaxed.owl indole derivative biosynthetic process|indole-containing compound synthesis|indole-containing compound biosynthesis|indole-containing compound anabolism|indole derivative biosynthesis|indole-containing compound formation biological_process owl:Class GO:0046859 biolink:NamedThing hydrogenosomal membrane The lipid bilayer surrounding a hydrogenosome. tmpzr1t_l9r_go_relaxed.owl hydrogenosome membrane cellular_component owl:Class GO:0098588 biolink:NamedThing bounding membrane of organelle The lipid bilayer that forms the outer-most layer of an organelle. tmpzr1t_l9r_go_relaxed.owl Examples include the outer membranes of double membrane bound organelles such as mitochondria as well as the bounding membranes of single-membrane bound organelles such as lysosomes. dos 2014-02-26T13:41:31Z cellular_component owl:Class GO:0048575 biolink:NamedThing short-day photoperiodism, flowering A change from vegetative to reproductive phase as a result of detection of, or exposure to, a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length. tmpzr1t_l9r_go_relaxed.owl short-day photoperiodic control of flowering time|short-day photoperiodic control of flowering|response to long-night, flowering|short-day photoperiodic control of inflorescence development|long-night photoperiodism, flowering|response to short-day, flowering biological_process owl:Class GO:0048573 biolink:NamedThing photoperiodism, flowering A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. tmpzr1t_l9r_go_relaxed.owl photoperiodic control of flowering time|response to night length, flowering|photoperiodic control of inflorescence development|response to photoperiod, flowering|response to day length, flowering biological_process owl:Class GO:1902697 biolink:NamedThing valine catabolic process to isobutanol The chemical reactions and pathways resulting in the breakdown of valine to isobutanol. tmpzr1t_l9r_go_relaxed.owl valine catabolism to isobutanol|valine degradation to isobutanol|valine breakdown to isobutanol tb 2014-02-19T18:28:19Z GO:1990292 biological_process owl:Class GO:0006574 biolink:NamedThing valine catabolic process The chemical reactions and pathways resulting in the breakdown of valine, 2-amino-3-methylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl valine breakdown|valine catabolism|valine degradation MetaCyc:VALDEG-PWY biological_process owl:Class GO:1901465 biolink:NamedThing positive regulation of tetrapyrrole biosynthetic process Any process that activates or increases the frequency, rate or extent of tetrapyrrole biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of tetrapyrrole formation|positive regulation of tetrapyrrole formation|positive regulation of tetrapyrrole anabolism|up regulation of tetrapyrrole biosynthetic process|up-regulation of tetrapyrrole biosynthesis|up-regulation of tetrapyrrole formation|upregulation of tetrapyrrole biosynthetic process|positive regulation of tetrapyrrole synthesis|up regulation of tetrapyrrole synthesis|activation of tetrapyrrole biosynthetic process|up-regulation of tetrapyrrole synthesis|up regulation of tetrapyrrole biosynthesis|upregulation of tetrapyrrole formation|upregulation of tetrapyrrole biosynthesis|up-regulation of tetrapyrrole biosynthetic process|positive regulation of tetrapyrrole biosynthesis|activation of tetrapyrrole biosynthesis|up-regulation of tetrapyrrole anabolism|activation of tetrapyrrole synthesis|upregulation of tetrapyrrole synthesis|activation of tetrapyrrole formation|activation of tetrapyrrole anabolism|up regulation of tetrapyrrole anabolism|upregulation of tetrapyrrole anabolism tt 2012-10-02T14:35:43Z biological_process owl:Class GO:0031328 biolink:NamedThing positive regulation of cellular biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular biosynthesis|upregulation of cellular biosynthetic process|positive regulation of cellular anabolism|up-regulation of cellular biosynthetic process|activation of cellular biosynthetic process|up regulation of cellular biosynthetic process|positive regulation of cellular synthesis|stimulation of cellular biosynthetic process|positive regulation of cellular formation biological_process owl:Class GO:0008614 biolink:NamedThing pyridoxine metabolic process The chemical reactions and pathways involving pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxine metabolism GO:0006773 biological_process owl:Class GO:1901615 biolink:NamedThing organic hydroxy compound metabolic process The chemical reactions and pathways involving organic hydroxy compound. tmpzr1t_l9r_go_relaxed.owl organic hydroxy compound metabolism pr 2012-11-13T12:54:27Z biological_process owl:Class GO:0060280 biolink:NamedThing negative regulation of ovulation Any process that stops, prevents, or reduces the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043915 biolink:NamedThing L-seryl-tRNA(Sec) kinase activity Catalysis of the reaction: ATP + L-seryl-tRNA(Sec) = ADP + O-phospho-L-seryl-tRNA(Sec). tmpzr1t_l9r_go_relaxed.owl O-phosphoseryl-tRNA(Sec) kinase activity MetaCyc:RXN-10038|EC:2.7.1.164|RHEA:25037 molecular_function owl:Class GO:0140101 biolink:NamedThing catalytic activity, acting on a tRNA Catalytic activity that acts to modify a tRNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225 pg 2017-09-15T18:41:41Z molecular_function owl:Class GO:0036138 biolink:NamedThing peptidyl-histidine hydroxylation The hydroxylation of peptidyl-histidine to form peptidyl-hydroxyhistidine. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-07T09:25:25Z biological_process owl:Class GO:0018202 biolink:NamedThing peptidyl-histidine modification The modification of peptidyl-histidine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060760 biolink:NamedThing positive regulation of response to cytokine stimulus Any process that increases the rate, frequency, or extent of a response to cytokine stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:58:04Z biological_process owl:Class GO:0048584 biolink:NamedThing positive regulation of response to stimulus Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of response to stimulus|activation of response to stimulus|stimulation of response to stimulus|up-regulation of response to stimulus|upregulation of response to stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0044630 biolink:NamedThing modulation of complement activation, lectin pathway in other organism A process that modulates the frequency, rate or extent of the lectin pathway of complement activation, in a different organism. tmpzr1t_l9r_go_relaxed.owl regulation of complement activation, lectin pathway in other organism jl 2012-07-05T01:10:31Z biological_process owl:Class GO:0044645 biolink:NamedThing modulation of complement activation in other organism A process that modulates the frequency, rate or extent of complement activation in a different organism. tmpzr1t_l9r_go_relaxed.owl regulation of complement activation in other organism jl 2012-07-11T12:37:50Z biological_process owl:Class GO:1900229 biolink:NamedThing negative regulation of single-species biofilm formation in or on host organism Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation in or on host organism. tmpzr1t_l9r_go_relaxed.owl down regulation of single-species biofilm formation in or on host organism|downregulation of single-species biofilm formation in or on host organism|down-regulation of single-species biofilm formation in or on host organism|inhibition of single-species biofilm formation in or on host organism di 2012-03-23T04:37:05Z biological_process owl:Class GO:1900228 biolink:NamedThing regulation of single-species biofilm formation in or on host organism Any process that modulates the frequency, rate or extent of single-species biofilm formation in or on host organism. tmpzr1t_l9r_go_relaxed.owl di 2012-03-23T04:36:54Z biological_process owl:Class GO:0032301 biolink:NamedThing MutSalpha complex A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6. tmpzr1t_l9r_go_relaxed.owl MSH2/MSH6 complex|MMR complex cellular_component owl:Class GO:0140513 biolink:NamedThing nuclear protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together in the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear complex pg 2020-09-09T05:12:38Z cellular_component owl:Class GO:1903779 biolink:NamedThing regulation of cardiac conduction Any process that modulates the frequency, rate or extent of cardiac conduction. tmpzr1t_l9r_go_relaxed.owl rph 2015-01-07T13:20:11Z biological_process owl:Class GO:1900968 biolink:NamedThing regulation of sarcinapterin metabolic process Any process that modulates the frequency, rate or extent of sarcinapterin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of sarcinapterin metabolism tt 2012-06-14T03:58:11Z biological_process owl:Class GO:0062012 biolink:NamedThing regulation of small molecule metabolic process Any process that modulates the rate, frequency or extent of a small molecule metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of small molecule metabolism dph 2018-03-19T14:11:54Z biological_process owl:Class GO:1902636 biolink:NamedThing kinociliary basal body A ciliary basal body that is part of a kinocilium. tmpzr1t_l9r_go_relaxed.owl cilial basal body of kinocilium|kinocilium ciliary basal body|ciliary basal body of kinocilium|microtubule basal body of kinocilium|cilium basal body of kinocilium|kinocilium basal body|kinocilial basal body pr 2014-01-20T13:48:45Z cellular_component owl:Class GO:0036064 biolink:NamedThing ciliary basal body A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport. tmpzr1t_l9r_go_relaxed.owl cilium basal body|basal body|cilial basal body|microtubule basal body|kinetosome NIF_Subcellular:sao11978067 In most eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component. bf 2011-12-15T10:40:20Z GO:0005932 cellular_component owl:Class GO:0033326 biolink:NamedThing cerebrospinal fluid secretion The regulated release of cerebrospinal fluid (CSF) from the choroid plexus of the lateral, third and fourth ventricles. The cerebrospinal fluid is a clear liquid that located within the ventricles, spinal canal, and subarachnoid spaces. tmpzr1t_l9r_go_relaxed.owl CSF secretion biological_process owl:Class GO:0007589 biolink:NamedThing body fluid secretion The controlled release of a fluid by a cell or tissue in an animal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018720 biolink:NamedThing phenol kinase activity Catalysis of the reaction: phenol + X-HPO3- = XH + phenylphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PHENOLPHOS-RXN|UM-BBD_reactionID:r0155 molecular_function owl:Class GO:0016773 biolink:NamedThing phosphotransferase activity, alcohol group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.1.-|Reactome:R-HSA-2161193 molecular_function owl:Class GO:0046907 biolink:NamedThing intracellular transport The directed movement of substances within a cell. tmpzr1t_l9r_go_relaxed.owl single organism intracellular transport|single-organism intracellular transport jl 2013-12-18T14:04:50Z GO:1902582 biological_process owl:Class GO:0051649 biolink:NamedThing establishment of localization in cell Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation. tmpzr1t_l9r_go_relaxed.owl establishment of cellular localization|positioning within cell|establishment of intracellular localization|establishment of localisation in cell|establishment of localization within cell biological_process owl:Class GO:0000491 biolink:NamedThing small nucleolar ribonucleoprotein complex assembly The aggregation, arrangement and bonding together of proteins and a snoRNA to form a small nucleolar ribonucleoprotein (snoRNP) complex. tmpzr1t_l9r_go_relaxed.owl snoRNP assembly biological_process owl:Class GO:0022618 biolink:NamedThing ribonucleoprotein complex assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. tmpzr1t_l9r_go_relaxed.owl RNA-protein complex assembly|RNP complex assembly|protein-RNA complex assembly biological_process owl:Class GO:1900884 biolink:NamedThing regulation of tridecane biosynthetic process Any process that modulates the frequency, rate or extent of tridecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of tridecane synthesis|regulation of tridecane anabolism|regulation of tridecane biosynthesis|regulation of tridecane formation tt 2012-06-13T03:00:31Z biological_process owl:Class GO:1900893 biolink:NamedThing regulation of tridecane metabolic process Any process that modulates the frequency, rate or extent of tridecane metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tridecane metabolism tt 2012-06-13T03:14:40Z biological_process owl:Class GO:1901314 biolink:NamedThing regulation of histone H2A K63-linked ubiquitination Any process that modulates the frequency, rate or extent of histone H2A K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-22T20:29:04Z biological_process owl:Class GO:1904481 biolink:NamedThing response to tetrahydrofolate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrahydrofolate stimulus. tmpzr1t_l9r_go_relaxed.owl hal 2015-07-14T14:49:17Z biological_process owl:Class GO:1901700 biolink:NamedThing response to oxygen-containing compound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. tmpzr1t_l9r_go_relaxed.owl response to oxygen molecular entity pr 2012-12-13T15:11:37Z biological_process owl:Class GO:1905751 biolink:NamedThing positive regulation of endosome to plasma membrane protein transport Any process that activates or increases the frequency, rate or extent of endosome to plasma membrane protein transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of endosome to plasma membrane protein transport|upregulation of endosome to plasma membrane protein transport|up regulation of endosome to plasma membrane protein transport|activation of endosome to plasma membrane protein transport pga 2016-12-09T13:46:30Z biological_process owl:Class GO:1905012 biolink:NamedThing regulation of 'de novo' NAD biosynthetic process from tryptophan Any process that modulates the frequency, rate or extent of 'de novo' NAD biosynthetic process from tryptophan. tmpzr1t_l9r_go_relaxed.owl regulation of de novo NAD biosynthetic process from tryptophan bf 2016-03-03T10:00:50Z biological_process owl:Class GO:0016649 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.5.5.- molecular_function owl:Class GO:0016645 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH group of donors, other acceptors EC:1.5.-.- molecular_function owl:Class GO:0072090 biolink:NamedThing mesenchymal stem cell proliferation involved in nephron morphogenesis The multiplication or reproduction of mesenchymal stem cells, resulting in the expansion of a stem cell population, that contributes to the shaping of a nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T02:05:54Z biological_process owl:Class GO:0097168 biolink:NamedThing mesenchymal stem cell proliferation The multiplication or reproduction of mesenchymal stem cells, resulting in the expansion of a stem cell population. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl MSC proliferation pr 2011-09-29T04:44:48Z biological_process owl:Class GO:0033771 biolink:NamedThing licodione synthase activity Catalysis of the reaction: H(+) + liquiritigenin + NADPH + O(2) = H(2)O + licodione + NADP(+). tmpzr1t_l9r_go_relaxed.owl (2S)-flavanone 2-hydroxylase activity|liquiritigenin,NADPH:oxygen oxidoreductase (licodione-forming) activity KEGG_REACTION:R07198|MetaCyc:1.14.13.87-RXN|RHEA:15697|EC:1.14.14.140 molecular_function owl:Class GO:0016709 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen Reactome:R-HSA-2162187|Reactome:R-HSA-2162194|EC:1.14.13.- molecular_function owl:Class GO:0080190 biolink:NamedThing lateral growth Growth of a plant axis (shoot axis or root) that originates from a lateral meristem. tmpzr1t_l9r_go_relaxed.owl Includes thickening of plant axes (PO:0025004) due to the activity of a cambium (PO:0005597), known as secondary growth and found in most gymnosperms and dicotyledons, a primary thickening meristem (PO:0005039) as found in many monocotyledons, some ferns and some cycads, or secondary thickening meristem, (PO:0025414) as found in some monocotyledons. dhl 2012-12-06T15:42:28Z biological_process owl:Class GO:0040007 biolink:NamedThing growth The increase in size or mass of an entire organism, a part of an organism or a cell. tmpzr1t_l9r_go_relaxed.owl non-developmental growth|growth pattern See also the biological process term 'cell growth ; GO:0016049'. GO:0048590 biological_process owl:Class GO:2000678 biolink:NamedThing negative regulation of transcription regulatory region DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-09T03:28:14Z biological_process owl:Class GO:0043392 biolink:NamedThing negative regulation of DNA binding Any process that stops or reduces the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid). tmpzr1t_l9r_go_relaxed.owl down-regulation of DNA binding|inhibition of DNA binding|down regulation of DNA binding|downregulation of DNA binding biological_process owl:Class GO:0002830 biolink:NamedThing positive regulation of type 2 immune response Any process that activates or increases the frequency, rate, or extent of a type 2 immune response. tmpzr1t_l9r_go_relaxed.owl activation of type 2 immune response|positive regulation of Th2 immune response|up regulation of type 2 immune response|stimulation of type 2 immune response|up-regulation of type 2 immune response|upregulation of type 2 immune response|positive regulation of T-helper 2 type immune response biological_process owl:Class GO:0002828 biolink:NamedThing regulation of type 2 immune response Any process that modulates the frequency, rate, or extent of a type 2 immune response. tmpzr1t_l9r_go_relaxed.owl regulation of Th2 immune response|regulation of T-helper 2 type immune response biological_process owl:Class GO:0017096 biolink:NamedThing acetylserotonin O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + N-acetylserotonin = S-adenosyl-L-homocysteine + melatonin. Melatonin is also known as N-acetyl-5-methoxytryptamine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:N-acetylserotonin O-methyltransferase activity|N-acetylserotonin O-methyltransferase activity|acetylserotonin methyltransferase activity|hydroxyindole O-methyltransferase activity|hydroxyindole methyltransferase activity EC:2.1.1.4|MetaCyc:ACETYLSEROTONIN-O-METHYLTRANSFERASE-RXN|RHEA:15573 GO:0017097 molecular_function owl:Class GO:0060053 biolink:NamedThing neurofilament cytoskeleton Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045111 biolink:NamedThing intermediate filament cytoskeleton Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045621 biolink:NamedThing positive regulation of lymphocyte differentiation Any process that activates or increases the frequency, rate or extent of lymphocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of lymphocyte differentiation|up-regulation of lymphocyte differentiation|upregulation of lymphocyte differentiation|positive regulation of lymphocyte development|stimulation of lymphocyte differentiation|activation of lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045619 biolink:NamedThing regulation of lymphocyte differentiation Any process that modulates the frequency, rate or extent of lymphocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of lymphocyte development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905412 biolink:NamedThing negative regulation of mitotic cohesin loading Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cohesin loading. tmpzr1t_l9r_go_relaxed.owl vw 2016-08-27T15:24:35Z biological_process owl:Class GO:0090519 biolink:NamedThing anoxia protection Any process in which an organism or cell protects itself from anoxia, which may also result in resistance to repeated exposure to anoxia. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-21T15:37:37Z biological_process owl:Class GO:0034059 biolink:NamedThing response to anoxia Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. tmpzr1t_l9r_go_relaxed.owl response to anoxic stress Note that this term should not be confused with 'response to hypoxia ; GO:0001666'. biological_process owl:Class GO:0048766 biolink:NamedThing root hair initiation The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000904 biolink:NamedThing cell morphogenesis involved in differentiation The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031438 biolink:NamedThing negative regulation of mRNA cleavage Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA cleavage. tmpzr1t_l9r_go_relaxed.owl downregulation of mRNA cleavage|down-regulation of mRNA cleavage|down regulation of mRNA cleavage|inhibition of mRNA cleavage biological_process owl:Class GO:0010243 biolink:NamedThing response to organonitrogen compound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond. tmpzr1t_l9r_go_relaxed.owl response to organic nitrogen biological_process owl:Class GO:0010033 biolink:NamedThing response to organic substance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to organic substance GO:1990367 biological_process owl:Class GO:0030211 biolink:NamedThing heparin catabolic process The chemical reactions and pathways resulting in the breakdown of heparin, any member of a group of glycosaminoglycans of average Mr (6000-20000), consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. tmpzr1t_l9r_go_relaxed.owl heparan sulfate catabolic process|heparin breakdown|heparin catabolism|heparin degradation biological_process owl:Class GO:0030202 biolink:NamedThing heparin metabolic process The chemical reactions and pathways involving heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells. They are similar to heparan sulfates but are of somewhat higher average Mr (6000-20000) and contain fewer N-acetyl groups and more N-sulfate and O-sulfate groups; they may be attached in the same manner to protein, forming proteoglycans. They consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. tmpzr1t_l9r_go_relaxed.owl heparin metabolism|heparan sulfate metabolic process biological_process owl:Class GO:1903687 biolink:NamedThing negative regulation of border follicle cell migration Any process that stops, prevents or reduces the frequency, rate or extent of border follicle cell migration. tmpzr1t_l9r_go_relaxed.owl inhibition of border follicle cell migration als 2014-12-01T13:41:05Z biological_process owl:Class GO:0034040 biolink:NamedThing ATPase-coupled lipid transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + lipid(in) = ADP + phosphate + lipid(out). tmpzr1t_l9r_go_relaxed.owl ATP-dependent lipid transmembrane transporter activity|lipid-transporting ATPase activity molecular_function owl:Class GO:0042626 biolink:NamedThing ATPase-coupled transmembrane transporter activity Primary active transporter of a solute across a membrane, via the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of a substance across a membrane. The transport protein may be transiently phosphorylated (P-type transporters), or not (ABC-type transporters and other families of transporters). Primary active transport occurs up the solute's concentration gradient and is driven by a primary energy source. tmpzr1t_l9r_go_relaxed.owl P-P-bond-hydrolysis-driven transmembrane transporter activity|hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|ATP-coupled transmembrane transporter activity|ATP-dependent transmembrane transporter activity|ATPase activity, coupled to transmembrane movement of substances|P-P-bond-hydrolysis-driven transporter|ATPase activity, coupled to movement of substances https://github.com/geneontology/go-ontology/issues/19965|https://github.com/geneontology/go-ontology/issues/17373|https://github.com/geneontology/go-ontology/issues/14642 Reactome:R-HSA-2161538|Reactome:R-HSA-1467457|Reactome:R-HSA-9033505|Reactome:R-HSA-9033499|Reactome:R-HSA-2161506 GO:0043492|GO:0016820|GO:0015405 molecular_function owl:Class GO:0032377 biolink:NamedThing regulation of intracellular lipid transport Any process that modulates the frequency, rate or extent of the directed movement of lipids within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032368 biolink:NamedThing regulation of lipid transport Any process that modulates the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045856 biolink:NamedThing positive regulation of pole plasm oskar mRNA localization Any process that activates or increases the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm. tmpzr1t_l9r_go_relaxed.owl activation of pole plasm oskar mRNA localization|positive regulation of pole plasm oskar mRNA localisation|positive regulation of oocyte pole plasm oskar mRNA localization|upregulation of pole plasm oskar mRNA localization|stimulation of pole plasm oskar mRNA localization|up regulation of pole plasm oskar mRNA localization|up-regulation of pole plasm oskar mRNA localization biological_process owl:Class GO:1905695 biolink:NamedThing positive regulation of phosphatidic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of phosphatidic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of phosphatidic acid anabolism|up-regulation of phosphatidic acid synthesis|upregulation of phosphatidic acid formation|activation of phosphatidic acid formation|activation of phosphatidic acid anabolism|upregulation of phosphatidic acid synthesis|up regulation of phosphatidic acid biosynthetic process|up regulation of phosphatidic acid formation|up-regulation of phosphatidic acid formation|activation of phosphatidic acid biosynthesis|up-regulation of phosphatidic acid biosynthesis|up-regulation of phosphatidic acid biosynthetic process|activation of phosphatidic acid synthesis|up regulation of phosphatidic acid synthesis|activation of phosphatidic acid biosynthetic process|upregulation of phosphatidic acid biosynthetic process|up regulation of phosphatidic acid biosynthesis|positive regulation of phosphatidic acid formation|upregulation of phosphatidic acid anabolism|up-regulation of phosphatidic acid anabolism|positive regulation of phosphatidic acid synthesis|positive regulation of phosphatidic acid anabolism|positive regulation of phosphatidic acid biosynthesis|upregulation of phosphatidic acid biosynthesis bc 2016-11-14T14:48:24Z biological_process owl:Class GO:0071073 biolink:NamedThing positive regulation of phospholipid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids. tmpzr1t_l9r_go_relaxed.owl positive regulation of phospholipid biosynthesis|up regulation of phospholipid biosynthetic process|positive regulation of phospholipid anabolism|stimulation of phospholipid biosynthetic process|upregulation of phospholipid biosynthetic process|activation of phospholipid biosynthetic process|positive regulation of phospholipid synthesis|positive regulation of phospholipid formation|up-regulation of phospholipid biosynthetic process mah 2009-11-04T03:18:51Z biological_process owl:Class GO:0062156 biolink:NamedThing mitochondrial ATP-gated potassium channel activity Enables the ATP-dependent diffusion of a potassium ion across the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl mitoK-ATP activity|mitochondrial potassium channel activity dph 2019-09-20T16:07:07Z molecular_function owl:Class GO:0099094 biolink:NamedThing ligand-gated cation channel activity Enables the transmembrane transfer of an inorganic cation by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035500 biolink:NamedThing MH2 domain binding Binding to a MH2 (MAD homology 2) protein domain. The MH2 domain is found at the carboxy-terminus of MAD related proteins such as Smads. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. tmpzr1t_l9r_go_relaxed.owl MAD homology 2 domain binding bf 2010-04-29T03:14:32Z molecular_function owl:Class GO:0019904 biolink:NamedThing protein domain specific binding Binding to a specific domain of a protein. tmpzr1t_l9r_go_relaxed.owl protein domain-specific binding molecular_function owl:Class GO:0032981 biolink:NamedThing mitochondrial respiratory chain complex I assembly The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I. tmpzr1t_l9r_go_relaxed.owl mitochondrial NADH dehydrogenase complex (ubiquinone) assembly|mitochondrial complex I assembly biological_process owl:Class GO:0033108 biolink:NamedThing mitochondrial respiratory chain complex assembly The aggregation, arrangement and bonding together of a set of components to form a mitochondrial respiratory chain complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009059 biolink:NamedThing macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl macromolecule anabolism|macromolecule formation|macromolecule biosynthesis|macromolecule synthesis|biopolymer biosynthetic process GO:0043284 biological_process owl:Class GO:0043170 biolink:NamedThing macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl multicellular organismal macromolecule metabolic process|organismal macromolecule metabolism|macromolecule metabolism|biopolymer metabolic process GO:0043283|GO:0044259 biological_process owl:Class GO:0004658 biolink:NamedThing propionyl-CoA carboxylase activity Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA. tmpzr1t_l9r_go_relaxed.owl PCCase activity|propionyl coenzyme A carboxylase activity|propanoyl-CoA:carbon-dioxide ligase (ADP-forming) EC:6.4.1.3|MetaCyc:PROPIONYL-COA-CARBOXY-RXN|Reactome:R-HSA-71031|RHEA:23720 molecular_function owl:Class GO:0016421 biolink:NamedThing CoA carboxylase activity Catalysis of the joining of a carboxyl group to a molecule that is attached to CoA, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000281 biolink:NamedThing regulation of histone H3-T3 phosphorylation Any process that modulates the frequency, rate or extent of histone H3-T3 phosphorylation. tmpzr1t_l9r_go_relaxed.owl vw 2010-12-10T11:48:31Z biological_process owl:Class GO:1903702 biolink:NamedThing esophagus development The process whose specific outcome is the progression of an esophagus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl esophageal development|oesophagus development|gullet development cls 2014-12-03T14:41:30Z biological_process owl:Class GO:0048513 biolink:NamedThing animal organ development Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl organogenesis|development of an organ Wikipedia:Organogenesis biological_process owl:Class GO:2000700 biolink:NamedThing positive regulation of cardiac muscle cell myoblast differentiation Any process that activates or increases the frequency, rate or extent of cardiac muscle cell myoblast differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of cardiac myoblast differentiation|positive regulation of myocardial precursor cell differentiation yaf 2011-05-25T09:08:09Z biological_process owl:Class GO:0045663 biolink:NamedThing positive regulation of myoblast differentiation Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl upregulation of myoblast differentiation|activation of myoblast differentiation|stimulation of myoblast differentiation|up regulation of myoblast differentiation|up-regulation of myoblast differentiation biological_process owl:Class GO:0006967 biolink:NamedThing positive regulation of antifungal peptide biosynthetic process Any process that activates or increases the frequency, rate, or extent of antifungal peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl antifungal peptide induction|activation of antifungal peptide biosynthetic process|up-regulation of antifungal peptide biosynthetic process|antifungal polypeptide induction|upregulation of antifungal peptide biosynthetic process|stimulation of antifungal peptide biosynthetic process|up regulation of antifungal peptide biosynthetic process biological_process owl:Class GO:0002807 biolink:NamedThing positive regulation of antimicrobial peptide biosynthetic process Any process that activates or increases the frequency, rate, or extent of antimicrobial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of antimicrobial peptide biosynthetic process|stimulation of antimicrobial peptide biosynthetic process|upregulation of antimicrobial peptide biosynthetic process|activation of antimicrobial peptide biosynthetic process|up regulation of antimicrobial peptide biosynthetic process biological_process owl:Class GO:0000749 biolink:NamedThing response to pheromone triggering conjugation with cellular fusion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus that positively regulates the process of conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl response to pheromone during conjugation with cellular fusion GO:0030434|GO:0007328 biological_process owl:Class GO:0019236 biolink:NamedThing response to pheromone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus. tmpzr1t_l9r_go_relaxed.owl pheromone response biological_process owl:Class GO:0017148 biolink:NamedThing negative regulation of translation Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein synthesis|negative regulation of protein biosynthetic process|down regulation of protein biosynthetic process|negative regulation of protein anabolism|inhibition of protein biosynthetic process|protein biosynthetic process inhibitor activity|downregulation of protein biosynthetic process|negative regulation of protein formation|down-regulation of protein biosynthetic process|protein biosynthesis inhibitor activity|negative regulation of protein biosynthesis GO:0016478 biological_process owl:Class GO:0006417 biolink:NamedThing regulation of translation Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. tmpzr1t_l9r_go_relaxed.owl regulation of protein anabolism|regulation of protein biosynthesis|regulation of protein synthesis|regulation of protein formation GO:0006445 biological_process owl:Class GO:0051009 biolink:NamedThing O-acetylhomoserine sulfhydrylase activity Catalysis of the reaction: O-acetyl-L-homoserine + hydrogen sulfide = homocysteine + acetate. tmpzr1t_l9r_go_relaxed.owl RHEA:27822|MetaCyc:ACETYLHOMOSER-CYS-RXN molecular_function owl:Class GO:0016835 biolink:NamedThing carbon-oxygen lyase activity Catalysis of the breakage of a carbon-oxygen bond. tmpzr1t_l9r_go_relaxed.owl other carbon-oxygen lyase activity EC:4.2.-.- molecular_function owl:Class GO:1990354 biolink:NamedThing activated SUMO-E1 ligase complex A protein complex consisting of a SUMO protein bound to a SUMO activating enzyme complex. Activation by the E1 complex and linkage to the E2 enzyme UBE2I is required for the formation of covalent bonds between SUMO and its ultimate target proteins. tmpzr1t_l9r_go_relaxed.owl SUMO-SAE1/2 complex An example of this is SAE1 in human (UniProt symbol Q9UBE0) in PMID:15660128 (inferred from direct assay). bhm 2014-03-31T13:22:45Z cellular_component owl:Class GO:0106068 biolink:NamedThing SUMO ligase complex A protein ligase complex that enables protein sumoylation. Consists of a SUMO-protein transferase and other proteins that may confer substrate specificity of the complex. tmpzr1t_l9r_go_relaxed.owl SUMO-protein ligase complex|Sumoylation complex|SUMO transferase complex hjd 2017-11-22T18:46:00Z cellular_component owl:Class GO:0015179 biolink:NamedThing L-amino acid transmembrane transporter activity Enables the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the L-enantiomers of amino acids. tmpzr1t_l9r_go_relaxed.owl L-amino acid transporter activity Reactome:R-HSA-212614 molecular_function owl:Class GO:0015171 biolink:NamedThing amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. tmpzr1t_l9r_go_relaxed.owl general amino acid permease activity|amino acid/choline transmembrane transporter activity|amino acid transporter activity|amino acid permease activity|hydroxy/aromatic amino acid permease activity Reactome:R-HSA-379415|Reactome:R-HSA-351963|Reactome:R-HSA-352379|Reactome:R-HSA-352103|Reactome:R-HSA-5660694|Reactome:R-HSA-375776|Reactome:R-HSA-352347|Reactome:R-HSA-352136|Reactome:R-HSA-352119|Reactome:R-HSA-352371|Reactome:R-HSA-5653850|Reactome:R-HSA-5660890|Reactome:R-HSA-352158|Reactome:R-HSA-375487|Reactome:R-HSA-376200|Reactome:R-HSA-352108|Reactome:R-HSA-352174|Reactome:R-HSA-888592|Reactome:R-HSA-352385|Reactome:R-HSA-352107|Reactome:R-HSA-352059|Reactome:R-HSA-5655702|Reactome:R-HSA-375417|Reactome:R-HSA-5660910|Reactome:R-HSA-5659674|Reactome:R-HSA-210439|Reactome:R-HSA-352364|Reactome:R-HSA-212642|Reactome:R-HSA-352354|Reactome:R-HSA-379432|Reactome:R-HSA-375768|Reactome:R-HSA-375770|Reactome:R-HSA-375473|Reactome:R-HSA-8952726|Reactome:R-HSA-379426|Reactome:R-HSA-5659755|Reactome:R-HSA-375405|Reactome:R-HSA-352029|Reactome:R-HSA-351987|Reactome:R-HSA-352191|Reactome:R-HSA-352052|Reactome:R-HSA-5659734|Reactome:R-HSA-375790|Reactome:R-HSA-352232|Reactome:R-HSA-352182|Reactome:R-HSA-378513 GO:0015359 molecular_function owl:Class GO:0052587 biolink:NamedThing diacetyl reductase ((R)-acetoin forming) activity Catalysis of the reaction: (R)-acetoin + NAD(+) = diacetyl + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (R)-acetoin dehydrogenase activity MetaCyc:RXN-11036|KEGG_REACTION:R02855|EC:1.1.1.303|RHEA:22900 molecular_function owl:Class GO:0019152 biolink:NamedThing acetoin dehydrogenase activity Catalysis of the reaction: acetoin + NAD+ = diacetyl + NADH + H+. tmpzr1t_l9r_go_relaxed.owl diacetyl reductase activity EC:1.1.1.304|MetaCyc:ACETOINDEHYDROG-RXN|EC:1.1.1.303|KEGG_REACTION:R02343 molecular_function owl:Class GO:1902939 biolink:NamedThing negative regulation of intracellular calcium activated chloride channel activity Any process that stops, prevents or reduces the frequency, rate or extent of intracellular calcium activated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl down regulation of intracellular calcium activated chloride channel activity|inhibition of intracellular calcium activated chloride channel activity|down-regulation of intracellular calcium activated chloride channel activity|downregulation of intracellular calcium activated chloride channel activity als 2014-04-28T08:49:14Z biological_process owl:Class GO:0008046 biolink:NamedThing axon guidance receptor activity Combining with an extracellular messenger and transmitting the signal from one side of the membrane to the other to results in a change in cellular activity involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl receptor activity involved in axon guidance molecular_function owl:Class GO:0004888 biolink:NamedThing transmembrane signaling receptor activity Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction. tmpzr1t_l9r_go_relaxed.owl transmembrane signalling receptor activity|transmembrane receptor activity Reactome:R-HSA-193672 This term includes intracellular membrane receptors, e.g. IP3 triggered release of Ca2+ from intracellular stores. GO:0004926|GO:0099600 molecular_function owl:Class GO:0002205 biolink:NamedThing somatic hypermutation of immunoglobulin genes involved in immune response Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins following the induction of and contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl somatic hypermutation of antibody genes during immune response|somatic hypermutation of immunoglobulin genes during immune response biological_process owl:Class GO:0002208 biolink:NamedThing somatic diversification of immunoglobulins involved in immune response The somatic process that results in the generation of sequence diversity of immunoglobulins after induction, and contributes to an immune response. tmpzr1t_l9r_go_relaxed.owl somatic diversification of immunoglobulins during immune response|somatic diversification of antibodies during immune response biological_process owl:Class GO:0003368 biolink:NamedThing cell-matrix adhesion involved in mesendodermal cell migration The binding of a cell to the extracellular matrix that contributes to the directed movement of a mesendodermal cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:26:12Z biological_process owl:Class GO:0007160 biolink:NamedThing cell-matrix adhesion The binding of a cell to the extracellular matrix via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030263 biolink:NamedThing apoptotic chromosome condensation The compaction of chromatin during apoptosis. tmpzr1t_l9r_go_relaxed.owl pyknosis Wikipedia:Pyknosis biological_process owl:Class GO:0030261 biolink:NamedThing chromosome condensation The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl eukaryotic chromosome condensation|DNA condensation|nuclear chromosome condensation GO:0000068 biological_process owl:Class GO:0042996 biolink:NamedThing regulation of Golgi to plasma membrane protein transport Any process that modulates the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903076 biolink:NamedThing regulation of protein localization to plasma membrane Any process that modulates the frequency, rate or extent of protein localization to plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of protein localization to plasma membrane|regulation of protein targeting to plasma membrane|regulation of establishment of protein localization in plasma membrane|regulation of establishment of protein localisation in plasma membrane|regulation of protein-plasma membrane targeting|regulation of protein localization in plasma membrane|regulation of protein localisation in plasma membrane tb 2009-07-10T10:32:44Z GO:1905963|GO:0090003 biological_process owl:Class GO:0060556 biolink:NamedThing regulation of vitamin D biosynthetic process Any process that modulates the rate frequency or extent of a vitamin D biosynthetic process. Vitamin D biosynthesis is the chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:42:15Z biological_process owl:Class GO:0031326 biolink:NamedThing regulation of cellular biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl regulation of cellular biosynthesis|regulation of cellular synthesis|regulation of cellular formation|regulation of cellular anabolism biological_process owl:Class GO:1904318 biolink:NamedThing regulation of smooth muscle contraction involved in micturition Any process that modulates the frequency, rate or extent of smooth muscle contraction involved in micturition. tmpzr1t_l9r_go_relaxed.owl regulation of urinary bladder smooth muscle contraction involved in micturition|regulation of smooth muscle contraction involved in urination sl 2015-06-10T18:46:11Z biological_process owl:Class GO:0006940 biolink:NamedThing regulation of smooth muscle contraction Any process that modulates the frequency, rate or extent of smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018034 biolink:NamedThing C-terminal peptidyl-alanine amidation The formation of a C-terminal peptidyl-alanine amide by hydrolysis and oxidation of an interior Ala-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0081 biological_process owl:Class GO:0018194 biolink:NamedThing peptidyl-alanine modification The modification of peptidyl-alanine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021829 biolink:NamedThing oligodendrocyte cell migration from the subpallium to the cortex The directed movement of oligodendrocytes from the subpallium to the cerebral cortex during forebrain development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022030 biolink:NamedThing telencephalon glial cell migration The orderly movement of glial cells through the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036203 biolink:NamedThing taxoid 14-beta-hydroxylase activity Catalysis of the reaction: 10beta-hydroxytaxa-4(20),11-dien-5alpha-yl acetate + O2 + NADPH + H+ = 10beta,14beta-dihydroxytaxa-4(20),11-dien-5alpha-yl acetate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R09867|RHEA:31971|EC:1.14.13.146 bf 2012-04-20T02:40:54Z molecular_function owl:Class GO:0032059 biolink:NamedThing bleb A cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Blebs are formed during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses. tmpzr1t_l9r_go_relaxed.owl plasma membrane bleb Wikipedia:Bleb_(cell_biology) cellular_component owl:Class GO:0120025 biolink:NamedThing plasma membrane bounded cell projection A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13193 krc 2017-03-21T17:26:07Z cellular_component owl:Class GO:0018247 biolink:NamedThing protein-phosphoribosyl dephospho-coenzyme A linkage The linkage of phosphoribosyl dephospho-coenzyme A to protein via peptidyl-serine, to form O-(phosphoribosyl dephospho-coenzyme A)-L-serine; it is uncertain whether the phosphoribosyl glycosidic attachment to the dephospho-coenzyme A is alpha or beta, and through the 2' or the 3' position. tmpzr1t_l9r_go_relaxed.owl RESID:AA0167 biological_process owl:Class GO:0018246 biolink:NamedThing protein-coenzyme A linkage The formation of a linkage between a protein amino acid and coenzyme A. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031896 biolink:NamedThing V2 vasopressin receptor binding Binding to a V2 vasopressin receptor. tmpzr1t_l9r_go_relaxed.owl V2 vasopressin receptor ligand molecular_function owl:Class GO:0031893 biolink:NamedThing vasopressin receptor binding Binding to a vasopressin receptor. tmpzr1t_l9r_go_relaxed.owl vasopressin receptor ligand molecular_function owl:Class GO:1900918 biolink:NamedThing negative regulation of octadecene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of octadecene metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of octadecene metabolism|downregulation of octadecene metabolism|down regulation of octadecene metabolism|down-regulation of octadecene metabolism|inhibition of octadecene metabolic process|down regulation of octadecene metabolic process|downregulation of octadecene metabolic process|inhibition of octadecene metabolism|down-regulation of octadecene metabolic process tt 2012-06-13T04:26:34Z biological_process owl:Class GO:1990826 biolink:NamedThing nucleoplasmic periphery of the nuclear pore complex Nucleoplasm situated in close proximity and peripheral to a nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl associated with the nuclear pore https://github.com/geneontology/go-ontology/issues/21774 sl 2015-08-19T18:26:26Z cellular_component owl:Class GO:0045290 biolink:NamedThing D-arabinose 1-dehydrogenase [NAD(P)+] activity Catalysis of the reaction: D-arabinose + NAD(P)+ = D-arabinono-1,4-lactone + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl D-arabinose:NAD(P)+ 1-oxidoreductase activity EC:1.1.1.117|MetaCyc:1.1.1.117-RXN molecular_function owl:Class GO:0016616 biolink:NamedThing oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. tmpzr1t_l9r_go_relaxed.owl NADH-dependent glyoxylate reductase|glycolate reductase|glyoxylic acid reductase EC:1.1.1.-|Reactome:R-HSA-975629 molecular_function owl:Class GO:0019271 biolink:NamedThing aerobactin transport The directed movement of the hydroxamate iron transport compound aerobactin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aerobactin (C22H36N4O13) is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072337 biolink:NamedThing modified amino acid transport The directed movement of modified amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl amino acid derivative transport mah 2010-11-04T12:18:23Z biological_process owl:Class GO:0061359 biolink:NamedThing regulation of Wnt signaling pathway by Wnt protein secretion Any process that modulates the frequency, rate or extent of the activity of the Wnt signaling pathway by the controlled release of a Wnt protein from a cell. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt-activated signaling pathway by Wnt protein secretion|regulation of Wnt receptor signalling pathway by Wnt protein secretion|regulation of Wnt receptor signaling pathway by Wnt protein secretion dph 2010-10-08T01:18:02Z biological_process owl:Class GO:0061355 biolink:NamedThing Wnt protein secretion The controlled release of a Wnt protein from a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-08T01:07:48Z biological_process owl:Class GO:0002855 biolink:NamedThing regulation of natural killer cell mediated immune response to tumor cell Any process that modulates the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002715 biolink:NamedThing regulation of natural killer cell mediated immunity Any process that modulates the frequency, rate, or extent of natural killer cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell mediated immunity|regulation of natural killer cell activity GO:0045845 biological_process owl:Class GO:0008878 biolink:NamedThing glucose-1-phosphate adenylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + ATP = ADP-glucose + diphosphate. tmpzr1t_l9r_go_relaxed.owl ADP-glucose pyrophosphorylase activity|glucose 1-phosphate adenylyltransferase activity|ADP-glucose synthetase activity|ATP:alpha-D-glucose-1-phosphate adenylyltransferase activity|ADGase activity|ATP:alpha-glucose-1-phosphate adenylyl transferase activity|adenosine diphosphoglucose pyrophosphorylase activity|adenosine diphosphate glucose pyrophosphorylase activity|ADP-glucose diphosphorylase activity|ADP-glucose synthase activity|ADP:alpha-D-glucose-1-phosphate adenylyltransferase activity|ADP glucose pyrophosphorylase activity|ADPG pyrophosphorylase activity EC:2.7.7.27|RHEA:12120|MetaCyc:GLUC1PADENYLTRANS-RXN|KEGG_REACTION:R00948 molecular_function owl:Class GO:0070566 biolink:NamedThing adenylyltransferase activity Catalysis of the transfer of an adenylyl group to an acceptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-15T11:04:22Z molecular_function owl:Class GO:0006760 biolink:NamedThing folic acid-containing compound metabolic process The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. tmpzr1t_l9r_go_relaxed.owl folate and derivative metabolic process|vitamin M and derivative metabolic process|vitamin B9 and derivative metabolism|vitamin M and derivative metabolism|folic acid-containing compound metabolism|folate and derivative metabolism|folic acid and derivative metabolism|folic acid and derivative metabolic process|vitamin B9 and derivative metabolic process|folate-containing compound metabolic process|folate-containing compound metabolism biological_process owl:Class GO:0042558 biolink:NamedThing pteridine-containing compound metabolic process The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. tmpzr1t_l9r_go_relaxed.owl pterin metabolic process|pteridine-containing compound metabolism|pteridine and derivative metabolism|pteridine and derivative metabolic process|pterin metabolism GO:0019721 biological_process owl:Class GO:0061299 biolink:NamedThing retina vasculature morphogenesis in camera-type eye The process in which the vasculature of the retina is generated and organized. tmpzr1t_l9r_go_relaxed.owl retinal vasculature morphogenesis dph 2010-09-06T03:28:25Z biological_process owl:Class GO:0009653 biolink:NamedThing anatomical structure morphogenesis The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form. tmpzr1t_l9r_go_relaxed.owl embryogenesis and morphogenesis|anatomical structure organization|morphogenesis Wikipedia:Morphogenesis biological_process owl:Class GO:2001171 biolink:NamedThing positive regulation of ATP biosynthetic process Any process that activates or increases the frequency, rate or extent of ATP biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of ATP formation|positive regulation of ATP synthesis|positive regulation of ATP biosynthesis|positive regulation of ATP regeneration|positive regulation of ATP anabolism kmv 2011-10-26T03:18:26Z biological_process owl:Class GO:0072594 biolink:NamedThing establishment of protein localization to organelle The directed movement of a protein to a specific location on or in an organelle. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to organelle mah 2011-02-14T01:56:51Z biological_process owl:Class GO:0045184 biolink:NamedThing establishment of protein localization The directed movement of a protein to a specific location. tmpzr1t_l9r_go_relaxed.owl protein positioning|establishment of protein localisation|protein recruitment biological_process owl:Class GO:0120233 biolink:NamedThing prenyl-FMNH2 binding Binding to prenyl-FMNH2, a flavin mononucleotide obtained by prenylation of the N-10 position of FMNH2 followed by cyclisation. An essential cofactor for the decarboxylase enzymes UbiD and Fdc1. tmpzr1t_l9r_go_relaxed.owl prenylated FMNH2 binding https://github.com/geneontology/go-ontology/issues/19244 krc 2020-06-30T19:32:01Z molecular_function owl:Class GO:0043168 biolink:NamedThing anion binding Binding to an anion, a charged atom or group of atoms with a net negative charge. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090338 biolink:NamedThing positive regulation of formin-nucleated actin cable assembly Any process that increases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:26:31Z biological_process owl:Class GO:0032233 biolink:NamedThing positive regulation of actin filament bundle assembly Any process that activates or increases the frequency, rate or extent of the assembly of actin filament bundles. tmpzr1t_l9r_go_relaxed.owl upregulation of actin filament bundle formation|activation of actin filament bundle formation|stimulation of actin filament bundle formation|up regulation of actin filament bundle formation|up-regulation of actin filament bundle formation biological_process owl:Class GO:0006554 biolink:NamedThing lysine catabolic process The chemical reactions and pathways resulting in the breakdown of lysine, 2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl lysine degradation|lysine breakdown|lysine catabolism biological_process owl:Class GO:0009063 biolink:NamedThing cellular amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl cellular amino acid breakdown|cellular amino acid catabolism|cellular amino acid degradation|amino acid catabolic process biological_process owl:Class GO:0070478 biolink:NamedThing nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay The chemical reactions and pathways resulting in the breakdown of the nuclear-transcribed mRNA transcript body of an mRNA in which an amino-acid codon has changed to a nonsense codon; occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction. tmpzr1t_l9r_go_relaxed.owl 3'-5' nonsense-mediated decay|3'-5' nonsense-mediated mRNA decay|nuclear-transcribed mRNA breakdown, 3'-5' exonucleolytic nonsense-mediated decay|nuclear-transcribed mRNA degradation, 3'-5' exonucleolytic nonsense-mediated decay|3'-5' NMD|nuclear-transcribed mRNA catabolism, 3'-5' exonucleolytic nonsense-mediated decay biological_process owl:Class GO:0034427 biolink:NamedThing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction. tmpzr1t_l9r_go_relaxed.owl 3'-5' exonucleolytic nuclear-transcribed mRNA catabolic process biological_process owl:Class GO:0014059 biolink:NamedThing regulation of dopamine secretion Any process that modulates the frequency, rate or extent of the regulated release of dopamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043269 biolink:NamedThing regulation of ion transport Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097635 biolink:NamedThing extrinsic component of autophagosome membrane The component of the autophagosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic component of autophagic vacuole membrane|extrinsic to autophagic vacuole membrane|autophagic vacuole peripheral membrane cellular_component owl:Class GO:0019898 biolink:NamedThing extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to membrane|peripheral membrane protein Wikipedia:Peripheral_membrane_protein Note that proteins extrinsic to membranes can be removed by treatments that do not disrupt the membrane, such as salt solutions. GO:0030396 cellular_component owl:Class GO:1904240 biolink:NamedThing negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of VCP-NPL4-UFD1 AAA ATPase complex assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|negative regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|down-regulation of p97-Ufd1-Npl4 complex assembly|inhibition of p97-Ufd1-Npl4 complex assembly|down-regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|down regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|downregulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|negative regulation of p97-Ufd1-Npl4 complex formation|down-regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|down regulation of p97-Ufd1-Npl4 complex formation|negative regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|downregulation of VCP-NPL4-UFD1 AAA ATPase complex formation|downregulation of p97-Ufd1-Npl4 complex assembly|downregulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|downregulation of p97-Ufd1-Npl4 complex formation|inhibition of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|negative regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|negative regulation of p97-Ufd1-Npl4 complex assembly|down regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|downregulation of VCP-NPL4-UFD1 AAA ATPase complex assembly|down regulation of p97-Ufd1-Npl4 complex assembly|down-regulation of p97-Ufd1-Npl4 complex formation|inhibition of VCP-NPL4-UFD1 AAA ATPase complex assembly|down regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly|inhibition of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|down-regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|inhibition of p97-Ufd1-Npl4 complex formation|down-regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly|inhibition of VCP-NPL4-UFD1 AAA ATPase complex formation bf 2015-05-18T09:50:27Z biological_process owl:Class GO:0031333 biolink:NamedThing negative regulation of protein-containing complex assembly Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein complex assembly|downregulation of protein complex assembly|down regulation of protein complex assembly|inhibition of protein complex assembly|negative regulation of protein complex assembly biological_process owl:Class GO:0070689 biolink:NamedThing L-threonine catabolic process to propionate The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form the compound propionate. tmpzr1t_l9r_go_relaxed.owl L-threonine catabolism to propionate|L-threonine breakdown to propionate|threonine catabolic process to propionate|L-threonine degradation to propionate MetaCyc:PWY-5437 mah 2009-06-03T01:36:54Z biological_process owl:Class GO:0006567 biolink:NamedThing threonine catabolic process The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl threonine catabolism|threonine breakdown|threonine degradation UM-BBD_pathwayID:met|MetaCyc:THREOCAT-PWY biological_process owl:Class GO:1901625 biolink:NamedThing cellular response to ergosterol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ergosterol stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-14T13:53:51Z biological_process owl:Class GO:0036315 biolink:NamedThing cellular response to sterol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sterol stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-21T14:51:21Z biological_process owl:Class GO:1904683 biolink:NamedThing regulation of metalloendopeptidase activity Any process that modulates the frequency, rate or extent of metalloendopeptidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of metalloendoproteinase activity|regulation of metalloendoprotease activity rph 2015-09-24T11:18:14Z biological_process owl:Class GO:1905048 biolink:NamedThing regulation of metallopeptidase activity Any process that modulates the frequency, rate or extent of metallopeptidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of metalloproteinase activity|regulation of metalloprotease activity mm2 2016-03-15T16:44:27Z biological_process owl:Class GO:1905263 biolink:NamedThing positive regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination Any process that activates or increases the frequency, rate or extent of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination. tmpzr1t_l9r_go_relaxed.owl up regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|up-regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|upregulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|activation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination se 2016-06-13T20:45:18Z biological_process owl:Class GO:0035426 biolink:NamedThing extracellular matrix-cell signaling Any process that mediates the transfer of information between the extracellular matrix and a cell. tmpzr1t_l9r_go_relaxed.owl cell-extracellular matrix signalling|extracellular matrix-cell signalling bf 2010-03-29T02:26:54Z biological_process owl:Class GO:0023052 biolink:NamedThing signaling The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. tmpzr1t_l9r_go_relaxed.owl signalling|signalling process|single organism signaling|signaling process|biological signaling Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. jl 2010-02-16T09:30:50Z GO:0044700|GO:0023046 biological_process owl:Class GO:0090394 biolink:NamedThing negative regulation of excitatory postsynaptic potential Any process that prevents the establishment or decreases the extent of the excitatory postsynaptic potential (EPSP) which is a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl negative regulation of EPSP|negative regulation of excitatory post-synaptic membrane potential|reduction of excitatory postsynaptic membrane potential tb 2010-12-15T01:43:12Z biological_process owl:Class GO:0098815 biolink:NamedThing modulation of excitatory postsynaptic potential Any process that modulates the frequency, rate or extent of excitatory postsynaptic potential (EPSP). EPSP is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902647 biolink:NamedThing negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis di 2014-01-21T17:58:06Z biological_process owl:Class GO:0010512 biolink:NamedThing negative regulation of phosphatidylinositol biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001919 biolink:NamedThing regulation of receptor recycling Any process that modulates the frequency, rate, or extent of receptor recycling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031323 biolink:NamedThing regulation of cellular metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. tmpzr1t_l9r_go_relaxed.owl regulation of cellular metabolism biological_process owl:Class GO:0003325 biolink:NamedThing pancreatic PP cell development The process whose specific outcome is the progression of a pancreatic PP cell over time, from its formation to the mature structure. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T08:25:03Z biological_process owl:Class GO:0002068 biolink:NamedThing glandular epithelial cell development The process whose specific outcome is the progression of a glandular epithelial cell over time, from its formation to the mature structure. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007312 biolink:NamedThing oocyte nucleus migration involved in oocyte dorsal/ventral axis specification The directed movement of the oocyte nucleus within the cell as part of the establishment and maintenance of the dorsal/ventral axis of the oocyte. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl establishment of oocyte nucleus localization involved in oocyte dorsal-ventral axis specification|oocyte nucleus positioning during oocyte axis determination|oocyte axis determination, establishment of localization of nucleus|establishment of oocyte nucleus localization during oocyte axis determination|oocyte nucleus migration during oocyte axis determination|oocyte nuclear migration during oocyte axis determination|establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification|oocyte nucleus migration during oocyte axis specification|oocyte axis determination, oocyte nucleus migration|oocyte axis determination, establishment of position of nucleus|oocyte axis determination, establishment of oocyte nucleus localization|establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis determination|nucleus positioning in oocyte during oocyte axis determination|establishment of oocyte nucleus localisation involved in oocyte dorsal/ventral axis specification|oocyte axis determination, oocyte nuclear migration|establishment of oocyte nucleus localization involved in oocyte dorsoventral axis specification|oocyte axis determination, positioning of nucleus|establishment of localization of oocyte nucleus during oocyte axis determination GO:0048128|GO:0030722|GO:0048126|GO:0008102 biological_process owl:Class GO:0007097 biolink:NamedThing nuclear migration The directed movement of the nucleus to a specific location within a cell. tmpzr1t_l9r_go_relaxed.owl establishment of position of nucleus|nucleus positioning|nucleus migration|nuclear positioning|positioning of nucleus|establishment of localization of nucleus|establishment of nucleus localization|nuclear movement|establishment of nucleus localisation|establishment of cell nucleus localization GO:0040023 biological_process owl:Class GO:0034134 biolink:NamedThing toll-like receptor 2 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 2. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 2 signalling pathway|TLR2 signaling pathway biological_process owl:Class GO:0002224 biolink:NamedThing toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl TLR signaling pathway|toll-like receptor signalling pathway Note that the vertebrate toll-like receptors, unlike the Drosophila Toll molecule, directly bind their ligands. The Drosophila Toll molecule requires the Sptzle factor to bind microbial ligands and then the receptor in order to initiate innate immune responses. biological_process owl:Class GO:0012511 biolink:NamedThing monolayer-surrounded lipid storage body A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. tmpzr1t_l9r_go_relaxed.owl oleosome|oilbody|spherosome|oil body Wikipedia:Oil_body GO:0009520 cellular_component owl:Class GO:0005811 biolink:NamedThing lipid droplet An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins. tmpzr1t_l9r_go_relaxed.owl lipid particle|lipid body|adiposome Note that this term does not refer to vesicles, but instead to structures in which lipids do not necessarily form bilayers. cellular_component owl:Class GO:0046112 biolink:NamedThing nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. tmpzr1t_l9r_go_relaxed.owl nucleobase synthesis|nucleobase biosynthesis|nucleobase formation|nucleobase anabolism biological_process owl:Class GO:0018130 biolink:NamedThing heterocycle biosynthetic process The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). tmpzr1t_l9r_go_relaxed.owl heterocycle formation|heterocycle biosynthesis|heterocycle anabolism|heterocycle synthesis biological_process owl:Class GO:0102910 biolink:NamedThing dirigent protein activity Catalysis of the reaction: 2 H+ + 2 coniferol + O2 <=> (+)-pinoresinol + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8677 molecular_function owl:Class GO:0016682 biolink:NamedThing oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl laccase activity EC:1.10.3.- molecular_function owl:Class GO:0032147 biolink:NamedThing activation of protein kinase activity Any process that initiates the activity of an inactive protein kinase. tmpzr1t_l9r_go_relaxed.owl protein kinase activation biological_process owl:Class GO:0045860 biolink:NamedThing positive regulation of protein kinase activity Any process that activates or increases the frequency, rate or extent of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl stimulation of protein kinase activity|up-regulation of protein kinase activity|up regulation of protein kinase activity|upregulation of protein kinase activity biological_process owl:Class GO:0050560 biolink:NamedThing aspartate-tRNA(Asn) ligase activity Catalysis of the reaction: tRNA(Asx) + L-aspartate + ATP = aspartyl-tRNA(Asx) + diphosphate + AMP. tmpzr1t_l9r_go_relaxed.owl aspartate-tRNAAsn ligase activity|L-aspartate:tRNAAsx ligase (AMP-forming)|nondiscriminating aspartyl-tRNA synthetase activity EC:6.1.1.23|MetaCyc:6.1.1.23-RXN|RHEA:18349 molecular_function owl:Class GO:0004812 biolink:NamedThing aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA synthetase auxiliary protein activity|ligase activity, forming aminoacyl-tRNA and related compounds|aminoacyl-tRNA synthetase activity EC:6.1.1.- Note that the bond resulting from this reaction is a carboxylic acid ester bond, linking the alpha carboxyl group of the amino acid to either the 2' or 3' hydroxyl of the 3'- terminal adenyl residue of the tRNA. GO:0017100|GO:0016876 molecular_function owl:Class GO:0062238 biolink:NamedThing Smp focus A DNA-binding ribonucleoprotein complex that contains a lncRNA complementary to the bound chromosomal locus and is involved in the tethering homologous chromosomes together during chromosome pairing at meiotic prophase I. tmpzr1t_l9r_go_relaxed.owl Smp dot dph 2020-04-20T14:23:04Z cellular_component owl:Class GO:1990904 biolink:NamedThing ribonucleoprotein complex A macromolecular complex that contains both RNA and protein molecules. tmpzr1t_l9r_go_relaxed.owl intracellular ribonucleoprotein complex|extracellular ribonucleoprotein complex|RNA-protein complex|protein-RNA complex|RNP Wikipedia:Ribonucleoprotein pr 2015-11-19T12:26:37Z GO:0030529|GO:1990903 cellular_component owl:Class GO:0099640 biolink:NamedThing axo-dendritic protein transport The directed movement of proteins along microtubules in neuron projections. tmpzr1t_l9r_go_relaxed.owl axonal protein transport biological_process owl:Class GO:0008088 biolink:NamedThing axo-dendritic transport The directed movement of organelles or molecules along microtubules in neuron projections. tmpzr1t_l9r_go_relaxed.owl axonal transport|axoplasmic transport|axon cargo transport Wikipedia:Axoplasmic_transport biological_process owl:Class GO:2000399 biolink:NamedThing negative regulation of thymocyte aggregation Any process that stops, prevents or reduces the frequency, rate or extent of thymocyte aggregation. tmpzr1t_l9r_go_relaxed.owl negative regulation of immature T cell aggregation|negative regulation of immature T-lymphocyte aggregation|negative regulation of T cell precursor aggregation|negative regulation of thymic lymphocyte aggregation|negative regulation of immature T-cell aggregation mah 2011-02-22T02:49:44Z biological_process owl:Class GO:0098882 biolink:NamedThing structural constituent of presynaptic active zone The action of a molecule that contributes to the structural integrity of a presynaptic active zone. tmpzr1t_l9r_go_relaxed.owl structural constituent of active zone molecular_function owl:Class GO:0005198 biolink:NamedThing structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019651 biolink:NamedThing citrate catabolic process to diacetyl The anaerobic chemical reactions and pathways resulting in the breakdown of citrate to diacetyl, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl diacetyl fermentation|citrate fermentation to diacetyl biological_process owl:Class GO:0019662 biolink:NamedThing non-glycolytic fermentation Fermentation that does not include the anaerobic conversion of glucose to pyruvate via the glycolytic pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015350 biolink:NamedThing methotrexate transmembrane transporter activity Enables the transfer of methotrexate, 4-amino-10-methylformic acid from one side of a membrane to the other. Methotrexate is a folic acid analogue and a potent competitive inhibitor of dihydrofolate reductase. tmpzr1t_l9r_go_relaxed.owl methotrexate transporter activity molecular_function owl:Class GO:0008514 biolink:NamedThing organic anion transmembrane transporter activity Enables the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2142859 molecular_function owl:Class GO:2000027 biolink:NamedThing regulation of animal organ morphogenesis Any process that modulates the frequency, rate or extent of animal organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of histogenesis and organogenesis tb 2010-08-05T11:26:27Z biological_process owl:Class GO:0010359 biolink:NamedThing regulation of anion channel activity Any process that modulates the frequency, rate or extent of anion channel activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903959 biolink:NamedThing regulation of anion transmembrane transport Any process that modulates the frequency, rate or extent of anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl pr 2015-02-25T13:52:25Z biological_process owl:Class GO:0060078 biolink:NamedThing regulation of postsynaptic membrane potential Any process that modulates the potential difference across a post-synaptic membrane. tmpzr1t_l9r_go_relaxed.owl regulation of post-synaptic membrane potential biological_process owl:Class GO:0042391 biolink:NamedThing regulation of membrane potential Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045729 biolink:NamedThing respiratory burst at fertilization The phase of elevated metabolic activity, during which oxygen consumption increases, that occurs at fertilization. An enhanced uptake of oxygen leads to the production of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. Capacitation, a necessary prerequisite event to successful fertilization, can be induced by reactive oxygen species in vitro; hydrogen peroxide is used as an extracellular oxidant to cross-link the protective surface envelopes. tmpzr1t_l9r_go_relaxed.owl metabolic burst at fertilization|oxidative burst at fertilization biological_process owl:Class GO:0045730 biolink:NamedThing respiratory burst A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl oxidative burst|metabolic burst Wikipedia:Respiratory_burst biological_process owl:Class GO:0061720 biolink:NamedThing 6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde The chemical reactions and pathways resulting in the breakdown of 6-sulfoquinovose(1-) resulting in the formation of glycerone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). tmpzr1t_l9r_go_relaxed.owl dph 2015-07-01T08:47:30Z biological_process owl:Class GO:1902777 biolink:NamedThing 6-sulfoquinovose(1-) catabolic process The chemical reactions and pathways resulting in the breakdown of 6-sulfoquinovose(1-). tmpzr1t_l9r_go_relaxed.owl 6-sulfoquinovose(1-) breakdown|6-sulfoquinovose(1-) degradation|6-sulfoquinovose(1-) catabolism dph 2014-03-18T17:46:03Z biological_process owl:Class GO:0097340 biolink:NamedThing inhibition of cysteine-type endopeptidase activity Any process that prevents the activation of an inactive cysteine-type endopeptidase. tmpzr1t_l9r_go_relaxed.owl prevention of caspase activity|inhibition of caspase activity|prevention of cysteine-type endopeptidase activity pr 2012-06-18T11:23:05Z biological_process owl:Class GO:0097341 biolink:NamedThing zymogen inhibition Any process that prevents the proteolytic processing of an inactive enzyme to an active form. tmpzr1t_l9r_go_relaxed.owl prevention of zymogen activation pr 2012-06-18T11:25:45Z biological_process owl:Class GO:0000480 biolink:NamedThing endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage within the 5'-External Transcribed Spacer (ETS) of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. Endonucleolytic cleavage within the 5'-ETS of the pre-RNA is conserved as one of the early steps of rRNA processing in all eukaryotes, but the specific position of cleavage is variable. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage at A0|endonucleolytic cleavage at A-prime biological_process owl:Class GO:0000479 biolink:NamedThing endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090549 biolink:NamedThing response to carbon starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of a carbon source. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-22T13:57:16Z biological_process owl:Class GO:0042594 biolink:NamedThing response to starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090696 biolink:NamedThing post-embryonic plant organ development Development, taking place during the post-embryonic phase of a plant tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-25T16:35:55Z biological_process owl:Class GO:0009791 biolink:NamedThing post-embryonic development The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035206 biolink:NamedThing regulation of hemocyte proliferation Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl regulation of arthropod blood cell proliferation biological_process owl:Class GO:0042127 biolink:NamedThing regulation of cell population proliferation Any process that modulates the frequency, rate or extent of cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of cell proliferation biological_process owl:Class GO:0042317 biolink:NamedThing penicillin catabolic process The chemical reactions and pathways resulting in the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl penicillin catabolism|penicillin degradation|penicillin breakdown biological_process owl:Class GO:0030655 biolink:NamedThing beta-lactam antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins. tmpzr1t_l9r_go_relaxed.owl beta-lactam antibiotic breakdown|beta-lactam antibiotic degradation|beta-lactam antibiotic catabolism biological_process owl:Class GO:0048093 biolink:NamedThing positive regulation of male pigmentation Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in males. tmpzr1t_l9r_go_relaxed.owl activation of male pigmentation|stimulation of male pigmentation|up-regulation of male pigmentation|up regulation of male pigmentation|upregulation of male pigmentation biological_process owl:Class GO:0048087 biolink:NamedThing positive regulation of developmental pigmentation Any process that increases the frequency, rate or extent of the developmental process that results in the deposition of coloring matter in an organism. tmpzr1t_l9r_go_relaxed.owl upregulation of developmental pigmentation|activation of developmental pigmentation|up regulation of developmental pigmentation|stimulation of developmental pigmentation|up-regulation of developmental pigmentation biological_process owl:Class GO:0030886 biolink:NamedThing negative regulation of myeloid dendritic cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid dendritic cell activation. tmpzr1t_l9r_go_relaxed.owl inhibition of myeloid dendritic cell activation|downregulation of myeloid dendritic cell activation|down regulation of myeloid dendritic cell activation|down-regulation of myeloid dendritic cell activation biological_process owl:Class GO:0050077 biolink:NamedThing maleylpyruvate isomerase activity Catalysis of the reaction: 3-maleylpyruvate = 3-fumarylpyruvate. tmpzr1t_l9r_go_relaxed.owl 3-maleylpyruvate cis-trans-isomerase activity EC:5.2.1.4|MetaCyc:MALEYLPYRUVATE-ISOMERASE-RXN|RHEA:17393 molecular_function owl:Class GO:0016859 biolink:NamedThing cis-trans isomerase activity Catalysis of a reaction that interconverts cis and trans isomers. Atoms or groups are termed cis or trans to one another when they lie respectively on the same or on opposite sides of a reference plane identifiable as common among stereoisomers. tmpzr1t_l9r_go_relaxed.owl EC:5.2.-.- molecular_function owl:Class GO:0006662 biolink:NamedThing glycerol ether metabolic process The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol ether metabolism biological_process owl:Class GO:0018904 biolink:NamedThing ether metabolic process The chemical reactions and pathways involving organic ethers, any anhydride of the general formula R1-O-R2, formed between two identical or nonidentical organic hydroxy compounds. tmpzr1t_l9r_go_relaxed.owl organic ether metabolic process|organic ether metabolism|ether metabolism biological_process owl:Class GO:0002455 biolink:NamedThing humoral immune response mediated by circulating immunoglobulin An immune response dependent upon secreted immunoglobulin. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl humoral defence mechanism|circulating immunoglobulin mediated immune response|circulating antibody mediated immune response|humoral immune response mediated by circulating antibody biological_process owl:Class GO:0006959 biolink:NamedThing humoral immune response An immune response mediated through a body fluid. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Humoral_immunity biological_process owl:Class GO:0140214 biolink:NamedThing positive regulation of long-chain fatty acid import into cell Any process that activates or increases the frequency, rate or extent of long-chain fatty acid import into a cell. tmpzr1t_l9r_go_relaxed.owl pg 2018-04-10T15:15:03Z biological_process owl:Class GO:2000193 biolink:NamedThing positive regulation of fatty acid transport Any process that activates or increases the frequency, rate or extent of fatty acid transport. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-18T10:37:17Z biological_process owl:Class GO:2000248 biolink:NamedThing negative regulation of establishment or maintenance of neuroblast polarity Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or maintenance of neuroblast polarity. tmpzr1t_l9r_go_relaxed.owl negative regulation of establishment and/or maintenance of neuroblast cell polarity vw 2010-11-11T11:40:34Z biological_process owl:Class GO:0034488 biolink:NamedThing basic amino acid transmembrane export from vacuole The directed movement of basic amino acids out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990822 biolink:NamedThing basic amino acid transmembrane transport The directed movement of basic amino acids from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl vw 2015-08-19T07:47:00Z biological_process owl:Class GO:0008115 biolink:NamedThing sarcosine oxidase activity Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl sarcosine:oxygen oxidoreductase (demethylating) KEGG_REACTION:R00610|EC:1.5.3.1|RHEA:13313|MetaCyc:SARCOX-RXN molecular_function owl:Class GO:0016647 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl EC:1.5.3.- molecular_function owl:Class GO:0052150 biolink:NamedThing modulation by symbiont of host apoptotic process Any process in which an organism modulates the frequency, rate or extent of programmed cell death in the host, where programmed cell death proceeds by apoptosis. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of host apoptotic programmed cell death|modulation by symbiont of host apoptosis Note that term is to be used to annotate gene products in the symbiont. To annotate host gene products, consider the biological process term 'regulation of apoptosis ; GO:0042981'. biological_process owl:Class GO:0042981 biolink:NamedThing regulation of apoptotic process Any process that modulates the occurrence or rate of cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl apoptosis regulator activity|regulation of apoptosis This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. biological_process owl:Class GO:1902617 biolink:NamedThing response to fluoride Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoride stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2014-01-10T19:41:49Z biological_process owl:Class GO:0010035 biolink:NamedThing response to inorganic substance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097251 biolink:NamedThing leukotriene B4 biosynthetic process The chemical reactions and pathways resulting in the formation of leukotriene B4, a leukotriene composed of (6Z,8E,10E,14Z)-eicosatetraenoic acid having (5S)- and (12R)-hydroxy substituents. tmpzr1t_l9r_go_relaxed.owl leukotriene B4 biosynthesis|leukotriene B4 formation|LTB4 synthesis|leukotriene B4 anabolism|leukotriene B4 synthesis|LTB4 anabolism|LTB4 formation|LTB4 biosynthesis pr 2012-02-24T09:34:01Z biological_process owl:Class GO:1901617 biolink:NamedThing organic hydroxy compound biosynthetic process The chemical reactions and pathways resulting in the formation of organic hydroxy compound. tmpzr1t_l9r_go_relaxed.owl organic hydroxy compound formation|organic hydroxy compound synthesis|organic hydroxy compound anabolism|organic hydroxy compound biosynthesis pr 2012-11-13T12:54:36Z biological_process owl:Class GO:0051045 biolink:NamedThing negative regulation of membrane protein ectodomain proteolysis Any process that stops, prevents, or reduces the frequency, rate or extent of membrane protein ectodomain proteolysis. tmpzr1t_l9r_go_relaxed.owl downregulation of membrane protein ectodomain proteolysis|down-regulation of membrane protein ectodomain proteolysis|inhibition of membrane protein ectodomain proteolysis|down regulation of membrane protein ectodomain proteolysis biological_process owl:Class GO:0051043 biolink:NamedThing regulation of membrane protein ectodomain proteolysis Any process that modulates the frequency, rate or extent of the proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034462 biolink:NamedThing small-subunit processome assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a small-subunit processome. tmpzr1t_l9r_go_relaxed.owl SSU processome assembly|small subunit processome assembly biological_process owl:Class GO:0140344 biolink:NamedThing triglyceride transfer activity Directly binding to a triglyceride and delivering it either to an acceptor molecule or to a specific location. tmpzr1t_l9r_go_relaxed.owl triglyceride carrier activity pg 2019-05-16T11:53:59Z molecular_function owl:Class GO:0120013 biolink:NamedThing lipid transfer activity Removes a lipid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. This results in intermembrane transfer of lipids. tmpzr1t_l9r_go_relaxed.owl lipid carrier activity|intermembrane lipid transfer activity https://github.com/geneontology/go-ontology/issues/17648|https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T03:17:29Z molecular_function owl:Class GO:0050421 biolink:NamedThing nitrite reductase (NO-forming) activity Catalysis of the reaction: nitric oxide + H2O + ferricytochrome c = nitrite + ferrocytochrome c + 2 H+. tmpzr1t_l9r_go_relaxed.owl cd-cytochrome nitrite reductase activity|NO-forming nitrite reductase activity|cytochrome cd1 activity|nitrite reductase (cytochrome; NO-forming) activity|NO-forming nitrite reductase (cytochrome) activity|nitric-oxide:ferricytochrome-c oxidoreductase activity|Pseudomonas cytochrome oxidase activity|[nitrite reductase (cytochrome)]|cytochrome c-551:O(2), NO(2)(+) oxidoreductase activity|methyl viologen-nitrite reductase activity|cytochrome cd activity|cytochrome c-551:O2, NO2+ oxidoreductase activity MetaCyc:NITRITE-REDUCTASE-CYTOCHROME-RXN|EC:1.7.2.1|RHEA:15233 Note that EC:1.7.99.3 was merged into this term. GO:0016666 molecular_function owl:Class GO:0098809 biolink:NamedThing nitrite reductase activity Catalysis of the reaction: nitrite + acceptor = product(s) of nitrate reduction + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035162 biolink:NamedThing embryonic hemopoiesis The stages of blood cell formation that take place within the embryo. tmpzr1t_l9r_go_relaxed.owl embryonic haemopoiesis|embryonic hematopoiesis|embryonic haematopoiesis biological_process owl:Class GO:0030097 biolink:NamedThing hemopoiesis The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates. tmpzr1t_l9r_go_relaxed.owl hematopoiesis|blood cell biosynthesis|haemopoiesis|blood cell formation Wikipedia:Haematopoiesis biological_process owl:Class GO:1902227 biolink:NamedThing negative regulation of macrophage colony-stimulating factor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of macrophage colony-stimulating factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of M-CSF signaling pathway|down regulation of macrophage colony-stimulating factor signaling pathway|inhibition of macrophage colony-stimulating factor signalling pathway|negative regulation of M-CSF signaling pathway|downregulation of macrophage colony-stimulating factor signaling pathway|downregulation of macrophage colony-stimulating factor signalling pathway|inhibition of macrophage colony-stimulating factor signaling pathway|inhibition of M-CSF signaling pathway|downregulation of M-CSF signaling pathway|down regulation of macrophage colony-stimulating factor signalling pathway|negative regulation of macrophage colony-stimulating factor signalling pathway|down-regulation of macrophage colony-stimulating factor signaling pathway|down-regulation of macrophage colony-stimulating factor signalling pathway|down regulation of M-CSF signaling pathway lb 2013-06-14T06:28:54Z biological_process owl:Class GO:1902226 biolink:NamedThing regulation of macrophage colony-stimulating factor signaling pathway Any process that modulates the frequency, rate or extent of macrophage colony-stimulating factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of M-CSF signaling pathway|regulation of macrophage colony-stimulating factor signalling pathway lb 2013-06-14T06:28:42Z biological_process owl:Class GO:0001960 biolink:NamedThing negative regulation of cytokine-mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the cytokine mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytokine mediated signaling pathway|negative regulation of cytokine mediated signalling pathway|negative regulation of cytokine and chemokine mediated signaling pathway|downregulation of cytokine mediated signaling pathway|inhibition of cytokine mediated signaling pathway|down regulation of cytokine mediated signaling pathway|down-regulation of cytokine mediated signaling pathway biological_process owl:Class GO:0015021 biolink:NamedThing heparin-sulfate lyase activity Catalysis of the elimination of sulfate; appears to act on linkages between N-acetyl-D-glucosamine and uronate. Product is an unsaturated sugar. tmpzr1t_l9r_go_relaxed.owl heparitinase I|heparin-sulphate lyase activity|heparitinase II|[heparan sulfate]-sulfate lyase activity|heparitin-sulfate lyase activity|heparin-sulfate eliminase activity MetaCyc:4.2.2.8-RXN|EC:4.2.2.8 molecular_function owl:Class GO:0016837 biolink:NamedThing carbon-oxygen lyase activity, acting on polysaccharides Catalysis of the cleavage of a carbon-oxygen bond by the elimination of an alcohol from a polysaccharide. tmpzr1t_l9r_go_relaxed.owl EC:4.2.2.- molecular_function owl:Class GO:0018118 biolink:NamedThing peptidyl-L-cysteine glutathione disulfide biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine by covalent addition of glutathione to form peptidyl-L-cysteine glutathione disulfide. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-cysteine glutathione disulphide biosynthesis from peptidyl-cysteine|peptidyl-L-cysteine glutathione disulfide anabolism from peptidyl-cysteine|peptidyl-L-cysteine glutathione disulfide formation from peptidyl-cysteine|peptidyl-L-cysteine glutathione disulfide synthesis from peptidyl-cysteine|peptidyl-L-cysteine glutathione disulphide biosynthetic process from peptidyl-cysteine RESID:AA0229 biological_process owl:Class GO:0018198 biolink:NamedThing peptidyl-cysteine modification The modification of peptidyl-cysteine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031745 biolink:NamedThing cysteinyl leukotriene receptor binding Binding to a cysteinyl leukotriene receptor. tmpzr1t_l9r_go_relaxed.owl cysteinyl leukotriene receptor ligand molecular_function owl:Class GO:0001664 biolink:NamedThing G protein-coupled receptor binding Binding to a G protein-coupled receptor. tmpzr1t_l9r_go_relaxed.owl G protein coupled receptor binding|G-protein-coupled receptor ligand|G-protein coupled receptor binding|G protein coupled receptor ligand Reactome:R-HSA-500717 molecular_function owl:Class GO:0035736 biolink:NamedThing cell proliferation involved in compound eye morphogenesis The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to compound eye morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T10:57:03Z biological_process owl:Class GO:0008283 biolink:NamedThing cell population proliferation The multiplication or reproduction of cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl cell proliferation This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. Also note that this term is intended to be used for the proliferation of cells within a multicellular organism, not for the expansion of a population of single-celled organisms. biological_process owl:Class GO:0072523 biolink:NamedThing purine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl purine-containing compound degradation|purine and derivative catabolic process|purine-containing compound breakdown|purine-containing compound catabolism mah 2011-01-04T03:17:20Z biological_process owl:Class GO:0045724 biolink:NamedThing positive regulation of cilium assembly Any process that activates or increases the frequency, rate or extent of the formation of a cilium. tmpzr1t_l9r_go_relaxed.owl up-regulation of cilium assembly|up regulation of cilium assembly|activation of cilium assembly|upregulation of cilium assembly|positive regulation of flagellum biogenesis|stimulation of cilium assembly|positive regulation of flagellum assembly biological_process owl:Class GO:0120034 biolink:NamedThing positive regulation of plasma membrane bounded cell projection assembly Any process that activates or increases the frequency, rate or extent of plasma membrane bounded cell projection assembly. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-26T04:34:45Z biological_process owl:Class GO:0032285 biolink:NamedThing non-myelinated axon ensheathment The process in which a non-myelinating glial cell membrane closes around an axon. tmpzr1t_l9r_go_relaxed.owl ensheathment of non-myelinated axons biological_process owl:Class GO:0008366 biolink:NamedThing axon ensheathment Any process in which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal. tmpzr1t_l9r_go_relaxed.owl cellular nerve ensheathment|nerve ensheathment|cellular axon ensheathment GO:0042553 biological_process owl:Class GO:0045740 biolink:NamedThing positive regulation of DNA replication Any process that activates or increases the frequency, rate or extent of DNA replication. tmpzr1t_l9r_go_relaxed.owl stimulation of DNA replication|activation of DNA replication|up-regulation of DNA replication|up regulation of DNA replication|upregulation of DNA replication biological_process owl:Class GO:0006275 biolink:NamedThing regulation of DNA replication Any process that modulates the frequency, rate or extent of DNA replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070101 biolink:NamedThing positive regulation of chemokine-mediated signaling pathway Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of chemokine-mediated signalling pathway biological_process owl:Class GO:0001961 biolink:NamedThing positive regulation of cytokine-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of a cytokine mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytokine and chemokine mediated signaling pathway|positive regulation of cytokine mediated signaling pathway|positive regulation of cytokine mediated signalling pathway|upregulation of cytokine mediated signaling pathway|up regulation of cytokine mediated signaling pathway|activation of cytokine mediated signaling pathway|stimulation of cytokine mediated signaling pathway|up-regulation of cytokine mediated signaling pathway biological_process owl:Class GO:0004939 biolink:NamedThing beta-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta-adrenergic receptors; the activity involves transmitting the signal to the Gs alpha subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl beta adrenoceptor molecular_function owl:Class GO:0004935 biolink:NamedThing adrenergic receptor activity Combining with epinephrine or norepinephrine and transmitting the signal across the membrane by activating the alpha-subunit of an associated heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl adrenoceptor activity Wikipedia:Adrenergic_receptor molecular_function owl:Class GO:0042615 biolink:NamedThing CD154 receptor binding Binding to CD154, a receptor found on the surface of some activated lymphocytes. tmpzr1t_l9r_go_relaxed.owl CD40 receptor activity|CD40L binding molecular_function owl:Class GO:0005102 biolink:NamedThing signaling receptor binding Binding to one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl receptor binding|receptor ligand|receptor-associated protein activity Wikipedia:Ligand_(biochemistry) Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. molecular_function owl:Class GO:0050936 biolink:NamedThing xanthophore differentiation The process in which a relatively unspecialized cell acquires the specialized features of a xanthophore cell. Xanthophores are pigment cells derived from the neural crest. They contain pteridine and/or carotenoid pigments in structures called pterinosomes or xanthosomes. This makes them yellow to orange in appearance. tmpzr1t_l9r_go_relaxed.owl xanthophore cell differentiation Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. biological_process owl:Class GO:0050931 biolink:NamedThing pigment cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte. tmpzr1t_l9r_go_relaxed.owl pigmented cell differentiation|chromatophore differentiation Note that the chromatophore mentioned here is distinct from the pigment bearing structure found in certain photosynthetic bacteria and cyanobacteria. It is also different from the plant chromoplast, which is also sometimes called a chromatophore. GO:0043357|GO:0043358 biological_process owl:Class GO:1902520 biolink:NamedThing response to doxorubicin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a doxorubicin stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2013-12-02T09:44:13Z biological_process owl:Class GO:1903416 biolink:NamedThing response to glycoside Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycoside stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to ouabain rl 2014-09-05T12:41:01Z biological_process owl:Class GO:1990153 biolink:NamedThing maintenance of protein localization to heterochromatin A process in which a protein is maintained in a location in telomeric heterochromatin. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location in heterochromatin|maintenance of protein localisation to heterochromatin mah 2013-07-31T15:11:37Z biological_process owl:Class GO:0032507 biolink:NamedThing maintenance of protein location in cell Any process in which a protein is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protein localization in cell biological_process owl:Class GO:0035682 biolink:NamedThing toll-like receptor 21 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 21. tmpzr1t_l9r_go_relaxed.owl TLR21 signaling pathway|toll-like receptor 21 signalling pathway bf 2011-02-21T02:39:39Z biological_process owl:Class GO:0020027 biolink:NamedThing hemoglobin metabolic process The chemical reactions and pathways involving hemoglobin, including its uptake and utilization. tmpzr1t_l9r_go_relaxed.owl haemoglobin metabolic process|haemoglobin metabolism|hemoglobin metabolism biological_process owl:Class GO:0044260 biolink:NamedThing cellular macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular biopolymer metabolic process|cellular macromolecule metabolism GO:0034960 biological_process owl:Class GO:0002494 biolink:NamedThing lipid antigen transport The directed movement of a lipid antigen into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006869 biolink:NamedThing lipid transport The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008291 biolink:NamedThing acetylcholine metabolic process The chemical reactions and pathways involving acetylcholine, the acetic acid ester of the organic base choline. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues. tmpzr1t_l9r_go_relaxed.owl acetylcholine metabolism biological_process owl:Class GO:0042133 biolink:NamedThing neurotransmitter metabolic process The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. tmpzr1t_l9r_go_relaxed.owl neurotransmitter metabolism biological_process owl:Class GO:0140255 biolink:NamedThing regulation of cellular response to phosphate starvation Any process that modulates the frequency, rate or extent of cellular response to phosphate starvation. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-07T17:11:42Z biological_process owl:Class GO:0080135 biolink:NamedThing regulation of cellular response to stress Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl dhl 2009-05-06T05:02:52Z biological_process owl:Class GO:0032077 biolink:NamedThing positive regulation of deoxyribonuclease activity Any process that activates or increases the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid. tmpzr1t_l9r_go_relaxed.owl DNase activator|activation of deoxyribonuclease activity|up regulation of deoxyribonuclease activity|up-regulation of deoxyribonuclease activity|deoxyribonuclease activator|stimulation of deoxyribonuclease activity|upregulation of deoxyribonuclease activity biological_process owl:Class GO:0004062 biolink:NamedThing aryl sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate. tmpzr1t_l9r_go_relaxed.owl phenol sulfotransferase activity|phenol sulfokinase activity|dopamine sulfotransferase activity|p-nitrophenol sulfotransferase activity|1-naphthol phenol sulfotransferase activity|aryl sulphotransferase activity|2-naphtholsulfotransferase activity|ritodrine sulfotransferase activity|3'-phosphoadenylyl-sulfate:phenol sulfotransferase activity|4-nitrocatechol sulfokinase activity|sulfokinase activity|PST|arylsulfotransferase MetaCyc:ARYL-SULFOTRANSFERASE-RXN|EC:2.8.2.1|Reactome:R-HSA-158849|Reactome:R-HSA-159358|Reactome:R-HSA-176474|Reactome:R-HSA-158468|Reactome:R-HSA-158860|RHEA:12164|Reactome:R-HSA-176646|Reactome:R-HSA-176585 molecular_function owl:Class GO:0008146 biolink:NamedThing sulfotransferase activity Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl sulphotransferase activity Reactome:R-HSA-2022061|Reactome:R-HSA-176669|Reactome:R-HSA-176588|EC:2.8.2.-|Reactome:R-HSA-176604 molecular_function owl:Class GO:0042009 biolink:NamedThing interleukin-15 binding Binding to interleukin-15. tmpzr1t_l9r_go_relaxed.owl IL-15 binding molecular_function owl:Class GO:0019955 biolink:NamedThing cytokine binding Binding to a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity. tmpzr1t_l9r_go_relaxed.owl IL binding|interleukin binding GO:0019965 molecular_function owl:Class GO:0048667 biolink:NamedThing cell morphogenesis involved in neuron differentiation The process in which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron. tmpzr1t_l9r_go_relaxed.owl neuron morphogenesis involved in differentiation biological_process owl:Class GO:0000902 biolink:NamedThing cell morphogenesis The developmental process in which the size or shape of a cell is generated and organized. tmpzr1t_l9r_go_relaxed.owl cellular morphogenesis GO:0045791|GO:0007148|GO:0045790 biological_process owl:Class GO:1900105 biolink:NamedThing negative regulation of hyaluranon cable assembly Any process that stops, prevents or reduces the frequency, rate or extent of hyaluranon cable assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of HA cable assembly|downregulation of HA cable assembly|down regulation of hyaluranon cable assembly|inhibition of HA cable assembly|negative regulation of HA cable assembly|inhibition of hyaluranon cable assembly|down regulation of HA cable assembly|downregulation of hyaluranon cable assembly|down-regulation of hyaluranon cable assembly yaf 2012-02-16T01:00:50Z biological_process owl:Class GO:1904251 biolink:NamedThing regulation of bile acid metabolic process Any process that modulates the frequency, rate or extent of bile acid metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of bile acid metabolism bf 2015-05-20T11:04:28Z biological_process owl:Class GO:0071546 biolink:NamedThing pi-body A P granule that contains the PIWIL2-TDRD1 module, a set of proteins that act in the primary piRNA pathway. The pi-body corresponds to the cementing material between mitochondria found in gonocytes. tmpzr1t_l9r_go_relaxed.owl intermitochondrial cement mah 2010-01-12T05:44:12Z cellular_component owl:Class GO:0043186 biolink:NamedThing P granule A small cytoplasmic, non-membranous RNA/protein complex aggregate in the primordial germ cells of many higher eukaryotes. tmpzr1t_l9r_go_relaxed.owl germline granule|nuage|polar granule GO:0018994 cellular_component owl:Class GO:0002013 biolink:NamedThing detection of carbon dioxide by vasomotor center The process by a carbon dioxide stimulus is received and converted to a molecular signal by the vasomotor center of the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003031 biolink:NamedThing detection of carbon dioxide The series of events in which a carbon dioxide stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901699 biolink:NamedThing cellular response to nitrogen compound Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to nitrogen molecular entity pr 2012-12-13T15:06:13Z biological_process owl:Class GO:0072052 biolink:NamedThing juxtaglomerulus cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the juxtaglomerulus cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:58:01Z biological_process owl:Class GO:1905284 biolink:NamedThing positive regulation of epidermal growth factor receptor signaling pathway involved in heart process Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway involved in heart process. tmpzr1t_l9r_go_relaxed.owl activation of EGF receptor signaling pathway involved in cardiac process|activation of EGF receptor signalling pathway involved in cardiac process|up regulation of EGF receptor signalling pathway involved in cardiac process|activation of ERBB1 signaling pathway involved in heart process|upregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|up regulation of ERBB1 signaling pathway involved in heart process|upregulation of ERBB1 signaling pathway involved in cardiac process|positive regulation of EGFR signaling pathway involved in heart process|activation of EGF receptor signaling pathway involved in heart process|positive regulation of EGF receptor signalling pathway involved in cardiac process|upregulation of ERBB1 signaling pathway involved in heart process|upregulation of EGFR signaling pathway involved in cardiac process|up-regulation of EGFR signaling pathway involved in heart process|up-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|positive regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|up-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|positive regulation of EGF receptor signaling pathway involved in heart process|positive regulation of ERBB1 signaling pathway involved in heart process|activation of epidermal growth factor receptor signaling pathway involved in cardiac process|up regulation of EGF receptor signaling pathway involved in cardiac process|up regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|up-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|up-regulation of EGF receptor signalling pathway involved in cardiac process|positive regulation of ERBB1 signaling pathway involved in cardiac process|positive regulation of EGF receptor signaling pathway involved in cardiac process|up regulation of epidermal growth factor receptor signalling pathway involved in heart process|up regulation of EGFR signaling pathway involved in cardiac process|positive regulation of epidermal growth factor receptor signalling pathway involved in heart process|up regulation of EGFR signaling pathway involved in heart process|up-regulation of EGF receptor signalling pathway involved in heart process|up-regulation of epidermal growth factor receptor signaling pathway involved in heart process|up regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|activation of ERBB1 signaling pathway involved in cardiac process|up regulation of EGF receptor signalling pathway involved in heart process|activation of EGF receptor signalling pathway involved in heart process|positive regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|activation of epidermal growth factor receptor signaling pathway involved in heart process|upregulation of EGFR signaling pathway involved in heart process|up-regulation of EGFR signaling pathway involved in cardiac process|upregulation of EGF receptor signalling pathway involved in cardiac process|upregulation of EGF receptor signaling pathway involved in heart process|up-regulation of epidermal growth factor receptor signalling pathway involved in heart process|upregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|activation of EGFR signaling pathway involved in heart process|upregulation of epidermal growth factor receptor signaling pathway involved in cardiac process|up-regulation of ERBB1 signaling pathway involved in cardiac process|upregulation of EGF receptor signaling pathway involved in cardiac process|up-regulation of ERBB1 signaling pathway involved in heart process|activation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|up-regulation of EGF receptor signaling pathway involved in heart process|positive regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|up regulation of EGF receptor signaling pathway involved in heart process|positive regulation of EGF receptor signalling pathway involved in heart process|activation of EGFR signaling pathway involved in cardiac process|positive regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|upregulation of epidermal growth factor receptor signalling pathway involved in heart process|activation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|up-regulation of EGF receptor signaling pathway involved in cardiac process|upregulation of epidermal growth factor receptor signaling pathway involved in heart process|up regulation of epidermal growth factor receptor signaling pathway involved in heart process|upregulation of epidermal growth factor receptor signalling pathway involved in cardiac process|upregulation of EGF receptor signalling pathway involved in heart process|activation of epidermal growth factor receptor signalling pathway involved in cardiac process|up regulation of ERBB1 signaling pathway involved in cardiac process|up regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|positive regulation of EGFR signaling pathway involved in cardiac process|up regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|up-regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|activation of epidermal growth factor receptor signalling pathway involved in heart process bc 2016-06-20T14:40:57Z biological_process owl:Class GO:1905282 biolink:NamedThing regulation of epidermal growth factor receptor signaling pathway involved in heart process Any process that modulates the frequency, rate or extent of epidermal growth factor receptor signaling pathway involved in heart process. tmpzr1t_l9r_go_relaxed.owl regulation of EGF receptor signalling pathway involved in cardiac process|regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|regulation of EGF receptor signalling pathway involved in heart process|regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|regulation of EGFR signaling pathway involved in heart process|regulation of EGF receptor signaling pathway involved in heart process|regulation of ERBB1 signaling pathway involved in heart process|regulation of ERBB1 signaling pathway involved in cardiac process|regulation of epidermal growth factor receptor signalling pathway involved in heart process|regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|regulation of EGF receptor signaling pathway involved in cardiac process|regulation of EGFR signaling pathway involved in cardiac process|regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process bc 2016-06-20T14:40:41Z biological_process owl:Class GO:0106121 biolink:NamedThing positive regulation of cobalamin metabolic process Any process that activates or increases the frequency, rate or extent of a cobalamin metabolic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-01T18:07:12Z biological_process owl:Class GO:0046136 biolink:NamedThing positive regulation of vitamin metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl up regulation of vitamin metabolic process|activation of vitamin metabolic process|upregulation of vitamin metabolic process|stimulation of vitamin metabolic process|up-regulation of vitamin metabolic process|positive regulation of vitamin metabolism biological_process owl:Class GO:0031589 biolink:NamedThing cell-substrate adhesion The attachment of a cell to the underlying substrate via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032745 biolink:NamedThing positive regulation of interleukin-21 production Any process that activates or increases the frequency, rate, or extent of interleukin-21 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-21 production|up-regulation of interleukin-21 production|up regulation of interleukin-21 production|positive regulation of IL-21 production|activation of interleukin-21 production|upregulation of interleukin-21 production|positive regulation of interleukin-21 biosynthetic process GO:0045392 biological_process owl:Class GO:0045948 biolink:NamedThing positive regulation of translational initiation Any process that activates or increases the frequency, rate or extent of translational initiation. tmpzr1t_l9r_go_relaxed.owl stimulation of translational initiation|up-regulation of translational initiation|upregulation of translational initiation|up regulation of translational initiation|activation of translational initiation biological_process owl:Class GO:0045727 biolink:NamedThing positive regulation of translation Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein synthesis|activation of protein biosynthetic process|positive regulation of protein biosynthetic process|up-regulation of protein biosynthetic process|positive regulation of protein biosynthesis|positive regulation of protein anabolism|up regulation of protein biosynthetic process|positive regulation of protein formation|upregulation of protein biosynthetic process|stimulation of protein biosynthetic process GO:0045946 biological_process owl:Class GO:0061942 biolink:NamedThing negative regulation of c-di-GMP signaling Any process that decreases the rate, frequency or extent of c-di-GMP signaling. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-14T19:13:44Z biological_process owl:Class GO:0010648 biolink:NamedThing negative regulation of cell communication Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021753 biolink:NamedThing superior salivary nucleus development The process whose specific outcome is the progression of the superior salivary nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021751 biolink:NamedThing salivary nucleus development The process whose specific outcome is the progression of a salivary nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110115 biolink:NamedThing Cdr2 medial cortical node complex A megadalton-sized complex at the medial cortex organized as an oligomeric core of SAD family protein kinases involved in cell size-dependent localization and phosphorylation of Wee1 during interphase. tmpzr1t_l9r_go_relaxed.owl interphase cortical node|interphase node kmv 2018-07-10T14:02:26Z cellular_component owl:Class GO:1902911 biolink:NamedThing protein kinase complex A protein complex which is capable of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PKM2 in human (P14618) in PMID:24606918 (inferred from direct assay). bhm 2014-04-17T13:52:40Z cellular_component owl:Class GO:0008120 biolink:NamedThing ceramide glucosyltransferase activity Catalysis of the reaction: UDP-glucose + N-acylsphingosine = UDP + D-glucosyl-N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl ceramide:UDP-glucose glucosyltransferase activity|UDP-glucose:ceramide glucosyltransferase activity|UDP-glucose:N-acylsphingosine D-glucosyltransferase activity|ceramide:UDPGlc glucosyltransferase activity|glucosylceramide synthase activity|UDP-glucose-ceramide glucosyltransferase activity|UDPglucose:N-acylsphingosine D-glucosyltransferase activity|uridine diphosphoglucose-ceramide glucosyltransferase activity EC:2.4.1.80|MetaCyc:CERAMIDE-GLUCOSYLTRANSFERASE-RXN|RHEA:12088|Reactome:R-HSA-1638104 molecular_function owl:Class GO:0035251 biolink:NamedThing UDP-glucosyltransferase activity Catalysis of the transfer of a glucosyl group from UDP-glucose to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1912353|MetaCyc:PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:1902955 biolink:NamedThing positive regulation of early endosome to recycling endosome transport Any process that activates or increases the frequency, rate or extent of early endosome to recycling endosome transport. tmpzr1t_l9r_go_relaxed.owl up regulation of early endosome to recycling endosome transport|upregulation of early endosome to recycling endosome transport|activation of early endosome to recycling endosome transport|up-regulation of early endosome to recycling endosome transport sjp 2014-05-02T09:06:29Z biological_process owl:Class GO:0033288 biolink:NamedThing ATPase-coupled hydroxyectoine transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + hydroxyectoine(out/in) = ADP + phosphate + hydroxyectoine(in/out). tmpzr1t_l9r_go_relaxed.owl ATP-dependent hydroxyectoine transmembrane transporter activity|hydroxyectoine transmembrane transporter activity|hydroxyectoine-transporting ATPase activity GO:0033287 molecular_function owl:Class GO:0015651 biolink:NamedThing quaternary ammonium group transmembrane transporter activity Enables the transfer of quaternary ammonium groups from one side of a membrane to the other. Quaternary ammonium groups are any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups. tmpzr1t_l9r_go_relaxed.owl quaternary amine transmembrane transporter activity|quaternary ammonium compound transporter activity GO:0015202 molecular_function owl:Class GO:0099140 biolink:NamedThing presynaptic actin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins in the presynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-06-09T18:34:19Z biological_process owl:Class GO:0030036 biolink:NamedThing actin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl actin cytoskeleton organization and biogenesis|actin modulating activity|actin cytoskeleton organisation biological_process owl:Class GO:0033398 biolink:NamedThing zeatin biosynthetic process The chemical reactions and pathways resulting in the formation of zeatin, 2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl zeatin biosynthesis|zeatin anabolism|zeatin formation|zeatin synthesis biological_process owl:Class GO:0072522 biolink:NamedThing purine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl purine-containing compound formation|purine-containing compound synthesis|purine-containing compound anabolism|purine and derivative biosynthetic process|purine-containing compound biosynthesis mah 2011-01-04T03:15:29Z biological_process owl:Class GO:0102516 biolink:NamedThing delphinidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-feruloyl-beta-D-glucose <=> delphinidin 3,7-di O-beta-D-glucoside + ferulate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14448 molecular_function owl:Class GO:0016758 biolink:NamedThing hexosyltransferase activity Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring hexosyl groups EC:2.4.1.- molecular_function owl:Class GO:0034734 biolink:NamedThing transcription factor TFIIIC1 complex A transcription factor complex that forms part of the TFIIIC complex, observed in human. The complex is poorly characterized, but contains the 250-kDa form of HsBdp1, and is thought to include nuclear factor 1 (NF1). It stimulates binding by human TFIIIC2 and is required for transcription activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090576 biolink:NamedThing RNA polymerase III transcription regulator complex A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription factor complex tb 2014-05-09T14:04:37Z cellular_component owl:Class GO:0000960 biolink:NamedThing regulation of mitochondrial RNA catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901627 biolink:NamedThing negative regulation of postsynaptic membrane organization Any process that stops, prevents or reduces the frequency, rate or extent of postsynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl inhibition of postsynaptic membrane organisation|down regulation of postsynaptic membrane organisation|negative regulation of postsynaptic membrane organisation|down-regulation of postsynaptic membrane organization|downregulation of postsynaptic membrane organisation|negative regulation of post-synaptic membrane organization|inhibition of postsynaptic membrane organization|down-regulation of postsynaptic membrane organisation|down regulation of postsynaptic membrane organization|downregulation of postsynaptic membrane organization ans 2012-11-15T11:40:20Z biological_process owl:Class GO:1900142 biolink:NamedThing negative regulation of oligodendrocyte apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of oligodendrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of oligodendrocyte apoptosis|downregulation of oligodendrocyte apoptotic process|negative regulation of oligodendrocyte apoptosis|down regulation of oligodendrocyte apoptosis|down-regulation of oligodendrocyte apoptosis|down regulation of oligodendrocyte apoptotic process|inhibition of oligodendrocyte apoptosis|down-regulation of oligodendrocyte apoptotic process|inhibition of oligodendrocyte apoptotic process yaf 2012-03-06T10:22:50Z biological_process owl:Class GO:0034351 biolink:NamedThing negative regulation of glial cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of glial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of glial cell apoptosis|inhibition of glial cell apoptosis|negative regulation of glial cell apoptosis|down-regulation of glial cell apoptosis|down regulation of glial cell apoptosis biological_process owl:Class GO:0061010 biolink:NamedThing gall bladder development The progression of the gall bladder over time, from its initial formation to the mature structure. The gall bladder is a cavitated organ that stores bile. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-22T09:38:44Z biological_process owl:Class GO:0072112 biolink:NamedThing glomerular visceral epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glomerular visceral epithelial cell. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells. tmpzr1t_l9r_go_relaxed.owl podocyte differentiation mah 2010-02-22T10:52:11Z biological_process owl:Class GO:0072311 biolink:NamedThing glomerular epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glomerular epithelial cell. Glomerular epithelial cells are specialized epithelial cells that form part of the glomerulus; there are two types, glomerular parietal epithelial cells and glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T06:49:21Z biological_process owl:Class GO:0046477 biolink:NamedThing glycosylceramide catabolic process The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. tmpzr1t_l9r_go_relaxed.owl glycosylceramide degradation|glycosylceramide breakdown|glycosylceramide catabolism biological_process owl:Class GO:0006677 biolink:NamedThing glycosylceramide metabolic process The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. tmpzr1t_l9r_go_relaxed.owl glycosylceramide metabolism biological_process owl:Class GO:1904344 biolink:NamedThing regulation of gastric mucosal blood circulation Any process that modulates the frequency, rate or extent of gastric mucosal blood circulation. tmpzr1t_l9r_go_relaxed.owl regulation of stomach mucosal blood circulation sl 2015-06-11T21:20:31Z biological_process owl:Class GO:0033283 biolink:NamedThing ATPase-coupled organic acid transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + organic acid(out/in) = ADP + phosphate + organic acid(in/out). tmpzr1t_l9r_go_relaxed.owl organic acid-transporting ATPase activity|ATP-dependent organic acid transmembrane transporter activity molecular_function owl:Class GO:2000168 biolink:NamedThing negative regulation of planar cell polarity pathway involved in neural tube closure Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in neural tube closure. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:08:56Z biological_process owl:Class GO:1904179 biolink:NamedThing positive regulation of adipose tissue development Any process that activates or increases the frequency, rate or extent of adipose tissue development. tmpzr1t_l9r_go_relaxed.owl positive regulation of adipogenesis|activation of adipogenesis|up regulation of adipogenesis|upregulation of adipose tissue development|up-regulation of adipogenesis|up-regulation of adipose tissue development|upregulation of adipogenesis|up regulation of adipose tissue development|activation of adipose tissue development sl 2015-04-29T20:01:13Z biological_process owl:Class GO:1904177 biolink:NamedThing regulation of adipose tissue development Any process that modulates the frequency, rate or extent of adipose tissue development. tmpzr1t_l9r_go_relaxed.owl regulation of adipogenesis sl 2015-04-29T20:01:01Z biological_process owl:Class GO:0018071 biolink:NamedThing NAD(P)-cysteine ADP-ribosyltransferase activity Catalysis of the reaction: NAD(P)+ + L-cysteine = nicotinamide + N2-(ADP-D-ribosyl)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0080134 biolink:NamedThing regulation of response to stress Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. dhl 2009-05-06T04:51:28Z biological_process owl:Class GO:0007500 biolink:NamedThing mesodermal cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl mesoderm cell fate determination Note that this term was 'mesoderm determination'. Changed string to make more consistent with parent term 'cell fate determination'. biological_process owl:Class GO:0001709 biolink:NamedThing cell fate determination A process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_fate_determination biological_process owl:Class GO:0042538 biolink:NamedThing hyperosmotic salinity response Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl response to hyperosmotic salt stress|salt tolerance biological_process owl:Class GO:0009651 biolink:NamedThing response to salt stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl response to ionic osmotic stress|salinity response biological_process owl:Class GO:0002371 biolink:NamedThing dendritic cell cytokine production Any process that contributes to cytokine production by a dendritic cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0002367 biolink:NamedThing cytokine production involved in immune response The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus contributing to an immune response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl cytokine production during immune response|cytokine biosynthetic process involved in immune response|cytokine secretion during immune response|cytokine secretion involved in immune response Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0002374|GO:0002375 biological_process owl:Class GO:1901547 biolink:NamedThing negative regulation of synaptic vesicle lumen acidification Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle lumen acidification. tmpzr1t_l9r_go_relaxed.owl downregulation of synaptic vesicle lumen acidification|inhibition of synaptic vesicle lumen acidification|inhibition of synaptic vesicle lumen pH reduction|negative regulation of proton loading|negative regulation of synaptic vesicle lumen pH reduction|down regulation of synaptic vesicle lumen acidification|downregulation of synaptic vesicle lumen pH reduction|down-regulation of synaptic vesicle lumen pH reduction|down regulation of synaptic vesicle lumen pH reduction|down-regulation of synaptic vesicle lumen acidification dsf 2012-10-26T16:09:28Z biological_process owl:Class GO:1904063 biolink:NamedThing negative regulation of cation transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of cation transmembrane transport. tmpzr1t_l9r_go_relaxed.owl downregulation of cation transmembrane transport|inhibition of cation transmembrane transport|down-regulation of cation transmembrane transport|down regulation of cation transmembrane transport sl 2015-03-18T21:11:50Z biological_process owl:Class GO:0009443 biolink:NamedThing pyridoxal 5'-phosphate salvage Any process that generates pyridoxal 5'-phosphate, the active form of vitamin B6, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl pyridoxal 5' phosphate salvage MetaCyc:PLPSAL-PWY biological_process owl:Class GO:0043094 biolink:NamedThing cellular metabolic compound salvage Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062044 biolink:NamedThing negative regulation of cardiac epithelial to mesenchymal transition Any process that stops or decreases the rate, frequency or extent of cardiac epithelial to mesenchymal transition, a transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-10T18:21:00Z biological_process owl:Class GO:0010719 biolink:NamedThing negative regulation of epithelial to mesenchymal transition Any process that decreases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010782 biolink:NamedThing proboscis morphogenesis, labial disc-derived The process in which the anatomical structures of the proboscis that are derived from the labial disc are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009886 biolink:NamedThing post-embryonic animal morphogenesis The process, occurring after animal embryonic development, by which anatomical structures are generated and organized. tmpzr1t_l9r_go_relaxed.owl post-embryonic morphogenesis of an anatomical structure biological_process owl:Class GO:0008340 biolink:NamedThing determination of adult lifespan The control of viability and duration in the adult phase of the life-cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052162 biolink:NamedThing modulation by symbiont of defense-related host calcium ion flux Any process in which an organism modulates the frequency, rate or extent of calcium ion fluxes as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related calcium ion flux in other organism involved in symbiotic interaction|modulation by organism of defense-related host Ca2+ flux GO:0052301 biological_process owl:Class GO:0052031 biolink:NamedThing modulation by symbiont of host defense response Any process in which an organism modulates the frequency, rate or extent of the defense response of its host, the response mounted by the host in response to the presence of the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense response of other organism involved in symbiotic interaction|pathogenesis|mitigation by symbiont of host defense response GO:0052255 biological_process owl:Class GO:2000279 biolink:NamedThing negative regulation of DNA biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of DNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of DNA synthesis|negative regulation of DNA anabolism|negative regulation of DNA formation|negative regulation of DNA biosynthesis yaf 2010-12-08T04:48:20Z biological_process owl:Class GO:2000278 biolink:NamedThing regulation of DNA biosynthetic process Any process that modulates the frequency, rate or extent of DNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of DNA formation|regulation of DNA synthesis|regulation of DNA biosynthesis|regulation of DNA anabolism yaf 2010-12-08T04:48:15Z biological_process owl:Class GO:0002644 biolink:NamedThing negative regulation of tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction. tmpzr1t_l9r_go_relaxed.owl inhibition of tolerance induction|down-regulation of tolerance induction|downregulation of tolerance induction|down regulation of tolerance induction biological_process owl:Class GO:0051093 biolink:NamedThing negative regulation of developmental process Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). tmpzr1t_l9r_go_relaxed.owl downregulation of developmental process|inhibition of developmental process|down-regulation of developmental process|down regulation of developmental process biological_process owl:Class GO:0004962 biolink:NamedThing endothelin receptor activity Combining with endothelin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl endothelin-B receptor activity|endothelin-A receptor activity GO:0001599|GO:0001600 molecular_function owl:Class GO:0008528 biolink:NamedThing G protein-coupled peptide receptor activity Combining with a peptide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl peptide receptor activity, G protein coupled|G protein coupled peptide receptor activity|peptide receptor activity, G-protein coupled|G-protein coupled peptide receptor activity molecular_function owl:Class GO:1903543 biolink:NamedThing positive regulation of exosomal secretion Any process that activates or increases the frequency, rate or extent of exosomal secretion. tmpzr1t_l9r_go_relaxed.owl activation of exosomal secretion|up regulation of exosomal secretion|activation of exosomal secretory pathway|up regulation of secretion of exosome|upregulation of exosomal secretory pathway|activation of secretion of exosome|up regulation of extracellular vesicular exosome secretion|upregulation of extracellular vesicular exosome secretion|up-regulation of exosomal secretory pathway|positive regulation of exosomal protein secretion|activation of extracellular vesicular exosome secretion|positive regulation of extracellular vesicular exosome secretion|up regulation of exosomal protein secretion|upregulation of exosomal secretion|upregulation of exosomal protein secretion|activation of exosomal protein secretion|upregulation of secretion of exosome|positive regulation of secretion of exosome|up-regulation of exosomal secretion|up regulation of exosomal secretory pathway|up-regulation of secretion of exosome|up-regulation of exosomal protein secretion|up-regulation of extracellular vesicular exosome secretion|positive regulation of exosomal secretory pathway pga 2014-10-14T11:39:10Z biological_process owl:Class GO:1903541 biolink:NamedThing regulation of exosomal secretion Any process that modulates the frequency, rate or extent of exosomal secretion. tmpzr1t_l9r_go_relaxed.owl regulation of exosomal protein secretion|regulation of extracellular vesicular exosome secretion|regulation of exosomal secretory pathway|regulation of secretion of exosome pga 2014-10-14T11:38:52Z biological_process owl:Class GO:1903365 biolink:NamedThing regulation of fear response Any process that modulates the frequency, rate or extent of fear response. tmpzr1t_l9r_go_relaxed.owl regulation of physiological fear response mr 2014-08-21T23:21:36Z biological_process owl:Class GO:0007058 biolink:NamedThing spindle assembly involved in female meiosis II The aggregation, arrangement and bonding together of a set of components to form the spindle during meiosis II of a meiotic cell cycle in females. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl female meiosis II spindle assembly biological_process owl:Class GO:0051225 biolink:NamedThing spindle assembly The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. tmpzr1t_l9r_go_relaxed.owl bipolar spindle biosynthesis|spindle formation|bipolar spindle formation|spindle biosynthesis GO:0051226|GO:0051227 biological_process owl:Class GO:0099553 biolink:NamedThing trans-synaptic signaling by endocannabinoid, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the release and reception of endocannabinoid ligands, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0099552 biolink:NamedThing trans-synaptic signaling by lipid, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the release and reception of lipid molecules, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0150011 biolink:NamedThing regulation of neuron projection arborization Any process that modulates the frequency, rate or extent of the process in which the anatomical structures of a neuron projection are generated and organized into branches. tmpzr1t_l9r_go_relaxed.owl regulation of neurite arborization|regulation of neuron projection branching|regulation of neurite branching bc 2017-12-13T16:32:34Z biological_process owl:Class GO:0031344 biolink:NamedThing regulation of cell projection organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell projections. tmpzr1t_l9r_go_relaxed.owl regulation of cell projection organisation|regulation of cell projection organization and biogenesis biological_process owl:Class GO:0002273 biolink:NamedThing plasmacytoid dendritic cell differentiation The process in which a relatively unspecialized hemopoietic precursor cell acquires the specialized features of a plasmacytoid dendritic cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002270 biolink:NamedThing plasmacytoid dendritic cell activation A change in the morphology or behavior of a plasmacytoid dendritic cell resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046450 biolink:NamedThing dethiobiotin metabolic process The chemical reactions and pathways involving dethiobiotin, a derivative of biotin formed by replacing the sulfur atom by two hydrogen atoms. tmpzr1t_l9r_go_relaxed.owl desthiobiotin metabolic process|desthiobiotin metabolism|dethiobiotin metabolism biological_process owl:Class GO:1901360 biolink:NamedThing organic cyclic compound metabolic process The chemical reactions and pathways involving organic cyclic compound. tmpzr1t_l9r_go_relaxed.owl organic cyclic compound metabolism bf 2012-09-14T09:03:51Z biological_process owl:Class GO:1900980 biolink:NamedThing regulation of phenazine biosynthetic process Any process that modulates the frequency, rate or extent of phenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of dibenzopyrazine biosynthesis|regulation of dibenzo-p-diazine biosynthesis|regulation of dibenzopyrazine biosynthetic process|regulation of azophenylene biosynthesis|regulation of azophenylene biosynthetic process|regulation of acridizine biosynthesis|regulation of acridizine biosynthetic process|regulation of dibenzo-p-diazine biosynthetic process tt 2012-06-14T04:04:39Z biological_process owl:Class GO:1905215 biolink:NamedThing negative regulation of RNA binding Any process that stops, prevents or reduces the frequency, rate or extent of RNA binding. tmpzr1t_l9r_go_relaxed.owl down-regulation of RNA binding|inhibition of RNA binding|down regulation of RNA binding|downregulation of RNA binding bf 2016-06-06T10:21:04Z biological_process owl:Class GO:0033989 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity Catalysis of the reaction: (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA = (24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA-forming] activity|46 kDa hydratase 2 activity|(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase activity|D-3-hydroxyacyl-CoA dehydratase activity EC:4.2.1.107|Reactome:R-HSA-193535|Reactome:R-HSA-192331|MetaCyc:4.2.1.107-RXN|RHEA:18933 molecular_function owl:Class GO:0016836 biolink:NamedThing hydro-lyase activity Catalysis of the cleavage of a carbon-oxygen bond by elimination of water. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.-|Reactome:R-HSA-9014627 molecular_function owl:Class GO:1900095 biolink:NamedThing regulation of dosage compensation by inactivation of X chromosome Any process that modulates the frequency, rate or extent of dosage compensation, by inactivation of X chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of Barr body formation|regulation of X chromosome inactivation|regulation of chromosome inactivation hjd 2012-02-14T07:29:45Z biological_process owl:Class GO:0010468 biolink:NamedThing regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl regulation of gene product expression|gene regulation|regulation of protein expression Wikipedia:Regulation_of_gene_expression This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation. biological_process owl:Class GO:1905002 biolink:NamedThing positive regulation of membrane repolarization during atrial cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of membrane repolarization during atrial cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl up regulation of electrocardiogram QRS complex|upregulation of electrocardiogram QRS complex|upregulation of membrane repolarization during atrial cardiac muscle cell action potential|positive regulation of atrial repolarization|activation of membrane repolarization during atrial cardiac muscle cell action potential|up-regulation of electrocardiogram QRS complex|upregulation of atrial repolarization|up regulation of membrane repolarization during atrial cardiac muscle cell action potential|activation of atrial repolarization|up-regulation of atrial repolarization|activation of electrocardiogram QRS complex|up regulation of atrial repolarization|up-regulation of membrane repolarization during atrial cardiac muscle cell action potential|positive regulation of electrocardiogram QRS complex rph 2016-03-01T13:28:21Z biological_process owl:Class GO:0016926 biolink:NamedThing protein desumoylation The process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein. tmpzr1t_l9r_go_relaxed.owl protein desumolation|desumoylation GO:0016928 biological_process owl:Class GO:0018205 biolink:NamedThing peptidyl-lysine modification The modification of peptidyl-lysine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900161 biolink:NamedThing regulation of phospholipid scramblase activity Any process that modulates the frequency, rate or extent of phospholipid scramblase activity. tmpzr1t_l9r_go_relaxed.owl rph 2012-03-08T10:57:19Z biological_process owl:Class GO:0061091 biolink:NamedThing regulation of phospholipid translocation Any process that modulates the frequency, rate or extent of the translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:54:22Z biological_process owl:Class GO:0150063 biolink:NamedThing visual system development The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways. tmpzr1t_l9r_go_relaxed.owl visual pathway development|optic pathway development bc 2018-07-23T10:31:58Z biological_process owl:Class GO:0048880 biolink:NamedThing sensory system development The process whose specific outcome is the progression of a sensory system over time from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099183 biolink:NamedThing trans-synaptic signaling by BDNF, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the vesicular release and reception of brain derived neurotrophic factor (BDNF), that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. dos 2017-12-01T18:25:24Z biological_process owl:Class GO:0099550 biolink:NamedThing trans-synaptic signaling, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:1900141 biolink:NamedThing regulation of oligodendrocyte apoptotic process Any process that modulates the frequency, rate or extent of oligodendrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of oligodendrocyte apoptosis yaf 2012-03-06T10:22:45Z biological_process owl:Class GO:0034350 biolink:NamedThing regulation of glial cell apoptotic process Any process that modulates the frequency, rate, or extent of glial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of glial cell apoptosis biological_process owl:Class GO:0042867 biolink:NamedThing pyruvate catabolic process The chemical reactions and pathways resulting in the breakdown of pyruvate, 2-oxopropanoate. tmpzr1t_l9r_go_relaxed.owl pyruvate catabolism|pyruvate degradation|pyruvate breakdown biological_process owl:Class GO:0072329 biolink:NamedThing monocarboxylic acid catabolic process The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-02T04:41:55Z biological_process owl:Class GO:0002094 biolink:NamedThing polyprenyltransferase activity Catalysis of the transfer of multiple prenyl groups from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004659 biolink:NamedThing prenyltransferase activity Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6806674|MetaCyc:GPPSYN-RXN molecular_function owl:Class GO:1900999 biolink:NamedThing nitrobenzene biosynthetic process The chemical reactions and pathways resulting in the formation of nitrobenzene. tmpzr1t_l9r_go_relaxed.owl nitrobenzene formation|nitrobenzene biosynthesis|nitrobenzene synthesis|nitrobenzene anabolism yaf 2012-06-14T02:54:32Z biological_process owl:Class GO:0019438 biolink:NamedThing aromatic compound biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. tmpzr1t_l9r_go_relaxed.owl aromatic compound biosynthesis|aromatic compound formation|aromatic compound anabolism|aromatic hydrocarbon biosynthesis|aromatic hydrocarbon biosynthetic process|aromatic compound synthesis biological_process owl:Class GO:0051674 biolink:NamedThing localization of cell Any process in which a cell is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of cell localization|cell localization|establishment and maintenance of localization of cell|localisation of cell biological_process owl:Class GO:0009987 biolink:NamedThing cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. tmpzr1t_l9r_go_relaxed.owl single-organism cellular process|cell growth and/or maintenance|cellular physiological process|cell physiology jl 2012-12-11T16:56:55Z GO:0044763|GO:0050875|GO:0008151 biological_process owl:Class GO:0042923 biolink:NamedThing neuropeptide binding Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042277 biolink:NamedThing peptide binding Binding to a peptide, an organic compound comprising two or more amino acids linked by peptide bonds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099066 biolink:NamedThing integral component of neuronal dense core vesicle membrane The component of the neuronal dense core vesicle membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031301 biolink:NamedThing integral component of organelle membrane The component of the organelle membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to organelle membrane cellular_component owl:Class GO:0034835 biolink:NamedThing 2-mercaptobenzothiazole monooxygenase activity Catalysis of the reaction: 2-mercaptobenzothiazole + 1/2 O2 = 6-hydroxy-2-mercaptobenzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1178|EC:1.13.12.- molecular_function owl:Class GO:0016703 biolink:NamedThing oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and one oxygen atom is incorporated into a donor. tmpzr1t_l9r_go_relaxed.owl EC:1.13.12.- molecular_function owl:Class GO:1903201 biolink:NamedThing regulation of oxidative stress-induced cell death Any process that modulates the frequency, rate or extent of oxidative stress-induced cell death. tmpzr1t_l9r_go_relaxed.owl regulation of cell death in response to oxidative stress bf 2014-07-21T16:10:30Z biological_process owl:Class GO:1901094 biolink:NamedThing negative regulation of protein homotetramerization Any process that stops, prevents or reduces the frequency, rate or extent of protein homotetramerization. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein homotetramer assembly|inhibition of protein homotetramer assembly|down-regulation of protein homotetramer biosynthetic process|down regulation of protein homotetramer formation|down regulation of protein homotetramer assembly|inhibition of protein homotetramer formation|down-regulation of protein homotetramerization|negative regulation of protein homotetramer formation|downregulation of protein homotetramer formation|downregulation of protein homotetramer assembly|inhibition of protein homotetramer biosynthetic process|inhibition of protein homotetramerization|negative regulation of protein homotetramer biosynthetic process|down-regulation of protein homotetramer formation|down-regulation of protein homotetramer biosynthesis|down regulation of protein homotetramerization|inhibition of protein homotetramer biosynthesis|downregulation of protein homotetramer biosynthesis|negative regulation of protein homotetramer biosynthesis|down regulation of protein homotetramer biosynthesis|downregulation of protein homotetramer biosynthetic process|negative regulation of protein homotetramer assembly|downregulation of protein homotetramerization|down regulation of protein homotetramer biosynthetic process pm 2012-07-06T12:57:58Z biological_process owl:Class GO:0032463 biolink:NamedThing negative regulation of protein homooligomerization Any process that stops, prevents, or reduces the frequency, rate or extent of protein homooligomerization. tmpzr1t_l9r_go_relaxed.owl downregulation of protein homooligomerization|inhibition of protein homooligomerization|down-regulation of protein homooligomerization|down regulation of protein homooligomerization biological_process owl:Class GO:0048754 biolink:NamedThing branching morphogenesis of an epithelial tube The process in which the anatomical structures of branches in an epithelial tube are generated and organized. A tube is a long hollow cylinder. tmpzr1t_l9r_go_relaxed.owl tubulogenesis biological_process owl:Class GO:0061138 biolink:NamedThing morphogenesis of a branching epithelium The process in which the anatomical structures of a branched epithelium are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T09:05:34Z biological_process owl:Class GO:0034246 biolink:NamedThing mitochondrial transcription factor activity Interacting with the mitochondrial promoter DNA to modulate transcription by the mitochondrial RNA polymerase. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA polymerase binding promoter specificity activity|mitochondrial RNA polymerase promoter specificity activity|mitochondrial transcription initiation factor activity|mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding|transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding|mitochondrial sequence-specific DNA binding transcription factor activity|transcription factor activity, mitochondrial proximal promoter sequence-specific binding|mitochondrial polymerase transcription factor activity|mitochondrial sequence-specific DNA-binding transcription factor activity|mitochondrial DNA-binding transcription factor activity|transcription factor activity, mitochondrial RNA polymerase core promoter proximal region sequence-specific binding|mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding mitochondrial RNA polymerase transcription factor activity|mitochondrial RNA polymerase core promoter sequence-specific DNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/14908|https://github.com/geneontology/go-ontology/issues/19891 krc 2011-01-27T01:55:21Z GO:0000998|GO:0001142|GO:0001144|GO:0001143 molecular_function owl:Class GO:0003700 biolink:NamedThing DNA-binding transcription factor activity A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. tmpzr1t_l9r_go_relaxed.owl sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity|metal ion regulated sequence-specific DNA binding transcription factor activity|transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding|bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding|transcription factor activity, metal ion regulated sequence-specific DNA binding|bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding|transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity|bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity|metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity|nucleic acid binding transcription factor activity|DNA binding transcription factor activity|gene-specific transcription factor activity|transcription factor activity|bacterial-type DNA binding transcription factor activity|transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding https://github.com/geneontology/go-ontology/issues/16534|https://github.com/geneontology/go-ontology/issues/15704|https://github.com/geneontology/go-ontology/issues/20253 Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions. krc 2010-10-21T04:37:54Z GO:0001204|GO:0001151|GO:0001199|GO:0001131|GO:0000130|GO:0001130|GO:0001071 molecular_function owl:Class GO:0060349 biolink:NamedThing bone morphogenesis The process in which bones are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009887 biolink:NamedThing animal organ morphogenesis Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl histogenesis and organogenesis biological_process owl:Class GO:0009167 biolink:NamedThing purine ribonucleoside monophosphate metabolic process The chemical reactions and pathways involving purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside monophosphate metabolism biological_process owl:Class GO:0009161 biolink:NamedThing ribonucleoside monophosphate metabolic process The chemical reactions and pathways involving a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside monophosphate metabolism biological_process owl:Class GO:0035075 biolink:NamedThing response to ecdysone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ecdysone stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036314 biolink:NamedThing response to sterol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sterol stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-21T14:50:14Z biological_process owl:Class GO:0002935 biolink:NamedThing tRNA (adenine-C2-)-methyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + adenine(37) in tRNA = S-adenosyl-L-homocysteine + 5'-deoxyadenosine + L-methionine + C2-methyladenine(37) in a tRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2012-09-04T14:39:56Z molecular_function owl:Class GO:0008169 biolink:NamedThing C-methyltransferase activity Catalysis of the transfer of a methyl group to the carbon atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.- molecular_function owl:Class GO:0047961 biolink:NamedThing glycine N-acyltransferase activity Catalysis of the reaction: acyl-CoA + glycine = CoA + N-acylglycine. tmpzr1t_l9r_go_relaxed.owl glycine acyltransferase activity|acyl-CoA:glycine N-acyltransferase activity|glycine-N-acylase activity Reactome:R-HSA-2534040|RHEA:19869|MetaCyc:GLYCINE-N-ACYLTRANSFERASE-RXN|EC:2.3.1.13 molecular_function owl:Class GO:0016410 biolink:NamedThing N-acyltransferase activity Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-177160 molecular_function owl:Class GO:0061419 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to hypoxia Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T01:07:43Z biological_process owl:Class GO:0061418 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to hypoxia Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T01:05:59Z biological_process owl:Class GO:1900724 biolink:NamedThing positive regulation of protein adenylylation Any process that activates or increases the frequency, rate or extent of protein adenylylation. tmpzr1t_l9r_go_relaxed.owl upregulation of protein adenylylation|up regulation of protein amino acid adenylylation|up-regulation of protein amino acid adenylylation|up-regulation of protein adenylation|up regulation of protein AMPylation|up-regulation of protein adenylylation|positive regulation of protein AMPylation|positive regulation of protein amino acid adenylylation|up regulation of protein adenylation|upregulation of protein AMPylation|up-regulation of protein AMPylation|activation of protein adenylylation|activation of protein AMPylation|upregulation of protein amino acid adenylylation|activation of protein amino acid adenylylation|up regulation of protein adenylylation|activation of protein adenylation|upregulation of protein adenylation|positive regulation of protein adenylation jl 2012-05-24T03:16:13Z biological_process owl:Class GO:1905865 biolink:NamedThing negative regulation of Atg1/ULK1 kinase complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of Atg1/ULK1 kinase complex assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of ATG1/ULK1 kinase complex formation|down-regulation of ULK1 signaling complex formation|down-regulation of ATG1/ULK1 kinase complex formation|inhibition of ATG1/ULK1 kinase complex formation|down-regulation of ATG1-ATG13 complex formation|down regulation of Atg1p signalling complex formation|down regulation of Atg1p signalling complex assembly|negative regulation of ULK1-ATG13-FIP200 complex assembly|inhibition of ATG1/ULK1 signaling complex formation|down-regulation of Atg1p signalling complex formation|down-regulation of ATG1/ULK1 signaling complex assembly|down regulation of ULK1 signaling complex assembly|down-regulation of ATG1/ULK1 kinase complex assembly|downregulation of Atg1p signalling complex assembly|negative regulation of Atg1p signalling complex assembly|negative regulation of ULK1 signaling complex formation|down-regulation of ULK1-ATG13-RB1CC1 complex formation|down regulation of ATG1/ULK1 signaling complex formation|inhibition of ATG1-ATG13 complex assembly|negative regulation of Atg1p signalling complex formation|down-regulation of ATG1 kinase complex assembly|negative regulation of ATG1-ATG13 complex formation|inhibition of ULK1 signaling complex assembly|downregulation of ATG1-ATG13 complex assembly|inhibition of ULK1-ATG13-FIP200 complex formation|down regulation of ATG1/ULK1 signaling complex assembly|inhibition of ATG1 kinase complex formation|down-regulation of Atg1p signalling complex assembly|down regulation of ATG1 kinase complex assembly|down regulation of ULK1-ATG13-RB1CC1 complex assembly|down regulation of ATG1-ATG13 complex assembly|down regulation of ULK1-ATG13-FIP200 complex formation|downregulation of ULK1-ATG13-RB1CC1 complex assembly|negative regulation of ATG1/ULK1 signaling complex formation|negative regulation of ATG1/ULK1 signaling complex assembly|down-regulation of ATG1/ULK1 signaling complex formation|down-regulation of ULK1 signaling complex assembly|down-regulation of ULK1-ATG13-RB1CC1 complex assembly|negative regulation of ULK1-ATG13-RB1CC1 complex formation|downregulation of ULK1-ATG13-FIP200 complex formation|inhibition of ATG1 kinase complex assembly|down regulation of ULK1 signaling complex formation|inhibition of ATG1/ULK1 kinase complex assembly|negative regulation of ULK1-ATG13-RB1CC1 complex assembly|down-regulation of ULK1-ATG13-FIP200 complex assembly|negative regulation of ATG1 kinase complex assembly|downregulation of ATG1 kinase complex formation|negative regulation of ATG1 kinase complex formation|downregulation of ATG1/ULK1 signaling complex assembly|negative regulation of ULK1 signaling complex assembly|downregulation of ULK1 signaling complex assembly|downregulation of ATG1 kinase complex assembly|downregulation of ATG1-ATG13 complex formation|negative regulation of ATG1-ATG13 complex assembly|inhibition of ATG1/ULK1 signaling complex assembly|downregulation of ULK1-ATG13-FIP200 complex assembly|negative regulation of ATG1/ULK1 kinase complex formation|inhibition of ATG1-ATG13 complex formation|downregulation of ATG1/ULK1 signaling complex formation|inhibition of ULK1-ATG13-RB1CC1 complex formation|downregulation of ULK1-ATG13-RB1CC1 complex formation|down regulation of ULK1-ATG13-RB1CC1 complex formation|down regulation of ATG1/ULK1 kinase complex assembly|down regulation of ATG1 kinase complex formation|inhibition of ULK1-ATG13-FIP200 complex assembly|inhibition of ULK1 signaling complex formation|down regulation of ULK1-ATG13-FIP200 complex assembly|downregulation of Atg1p signalling complex formation|downregulation of ULK1 signaling complex formation|down-regulation of ATG1-ATG13 complex assembly|down-regulation of ATG1 kinase complex formation|down regulation of ATG1-ATG13 complex formation|inhibition of Atg1p signalling complex assembly|down regulation of ATG1/ULK1 kinase complex formation|inhibition of ULK1-ATG13-RB1CC1 complex assembly|inhibition of Atg1p signalling complex formation|down-regulation of ULK1-ATG13-FIP200 complex formation|downregulation of ATG1/ULK1 kinase complex assembly|negative regulation of ULK1-ATG13-FIP200 complex formation pr 2017-01-26T13:23:35Z biological_process owl:Class GO:0043791 biolink:NamedThing dimethylamine methyltransferase activity Catalysis of the reaction: dimethylamine + a dimethylamine corrinoid protein = a methylated dimethylamine corrinoid protein + methylamine. tmpzr1t_l9r_go_relaxed.owl dimethylamine-specific methylcobalamin:coenzyme M methyltransferase activity|DMAMT 1|dimethylamine:corrinoid methyltransferase activity|mtbB1|DMA methyltransferase 1|MT1 MetaCyc:RXN-8100|EC:2.1.1.249|RHEA:41175 This function is the first step in the pathway of methanogenesis from dimethylamine. molecular_function owl:Class GO:0008168 biolink:NamedThing methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl methylase Reactome:R-HSA-212269|Reactome:R-HSA-71286|EC:2.1.1.-|Reactome:R-HSA-6800149|Reactome:R-HSA-379464|Reactome:R-HSA-379387 GO:0004480 molecular_function owl:Class GO:0061281 biolink:NamedThing specification of mesonephric connecting tubule identity The process in which the connecting tubule of the mesonephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl specification of mesonephric collecting tubule identity dph 2010-09-02T01:26:09Z biological_process owl:Class GO:0061282 biolink:NamedThing specification of mesonephric nephron tubule identity The process in which the tubules arranged along the proximal/distal axis of the mesonephric nephron acquire their identity. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:37:44Z biological_process owl:Class GO:0033944 biolink:NamedThing beta-galactofuranosidase activity Catalysis of the hydrolysis of terminal non-reducing beta-D-galactofuranosides, releasing galactose. tmpzr1t_l9r_go_relaxed.owl exo-beta-galactofuranosidase activity|beta-D-galactofuranosidase activity|exo-beta-D-galactofuranosidase activity|beta-D-galactofuranoside hydrolase activity MetaCyc:3.2.1.146-RXN|EC:3.2.1.146 molecular_function owl:Class GO:0004553 biolink:NamedThing hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond. tmpzr1t_l9r_go_relaxed.owl O-glucosyl hydrolase activity Reactome:R-HSA-6786652|Reactome:R-HSA-9661820|Reactome:R-HSA-5694563|EC:3.2.1.- GO:0016800 molecular_function owl:Class GO:0039517 biolink:NamedThing modulation by virus of host protein serine/threonine phosphatase activity The process in which a virus effects a change in host protein serine/threonine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host protein serine/threonine phosphatase activity|modulation by virus of protein serine/threonine phosphatase activity in host bf 2011-06-16T03:04:14Z biological_process owl:Class GO:0019054 biolink:NamedThing modulation by virus of host cellular process The process in which a virus effects a change in the processes and activities of its host organism. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host cellular process|modulation of cellular process in host by virus|modification by virus of host cellular process|regulation of host cellular process by virus|regulation of cellular process in host by virus|modulation by virus of host process|viral host cell process manipulation biological_process owl:Class GO:2000901 biolink:NamedThing cyclodextrin catabolic process The chemical reactions and pathways resulting in the breakdown of a cyclodextrin. tmpzr1t_l9r_go_relaxed.owl cyclodextrin catabolism jl 2011-07-28T03:19:13Z biological_process owl:Class GO:0009313 biolink:NamedThing oligosaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl oligosaccharide breakdown|multicellular organismal oligosaccharide catabolic process|oligosaccharide degradation|oligosaccharide catabolism GO:0051689 biological_process owl:Class GO:0014007 biolink:NamedThing negative regulation of microglia differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of microglia differentiation, the process in which a relatively unspecialized cell acquires specialized features of a microglial cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of microglial cell differentiation|inhibition of microglia differentiation|downregulation of microglia differentiation|down-regulation of microglia differentiation|down regulation of microglia differentiation biological_process owl:Class GO:0051033 biolink:NamedThing RNA transmembrane transporter activity Enables the transfer of RNA, ribonucleic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-203906 molecular_function owl:Class GO:0051032 biolink:NamedThing nucleic acid transmembrane transporter activity Enables the transfer of nucleic acids from one side of a membrane to the other. Nucleic acids are single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098940 biolink:NamedThing anterograde trans-synaptic signaling by nitric oxide Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by nitric oxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099548 biolink:NamedThing trans-synaptic signaling by nitric oxide Cell-cell signaling between presynapse and postsynapse mediated by nitric oxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019418 biolink:NamedThing sulfide oxidation The chemical reactions and pathways resulting in the conversion of sulfide to elemental sulfur in a higher oxidation state, or to sulfite or sulfate. tmpzr1t_l9r_go_relaxed.owl sulphide oxidation MetaCyc:P222-PWY biological_process owl:Class GO:0006790 biolink:NamedThing sulfur compound metabolic process The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. tmpzr1t_l9r_go_relaxed.owl sulphur metabolism|sulphur metabolic process|sulfur metabolism Wikipedia:Sulfur_metabolism biological_process owl:Class GO:0000979 biolink:NamedThing RNA polymerase II core promoter sequence-specific DNA binding Binding to a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene. tmpzr1t_l9r_go_relaxed.owl krc 2010-08-10T02:17:28Z molecular_function owl:Class GO:0000977 biolink:NamedThing RNA polymerase II transcription regulatory region sequence-specific DNA binding Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II regulatory region DNA binding https://github.com/geneontology/go-ontology/issues/19312 To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. krc 2010-08-10T11:05:36Z GO:0001012 molecular_function owl:Class GO:0060785 biolink:NamedThing regulation of apoptosis involved in tissue homeostasis Any process that modulates the occurrence or rate of cell death by apoptosis that results in the maintenance of the steady-state number of cells within a tissue. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-31T01:49:54Z biological_process owl:Class GO:0060223 biolink:NamedThing retinal rod cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060220 biolink:NamedThing camera-type eye photoreceptor cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015754 biolink:NamedThing allose transmembrane transport The process in which allose is transported across a lipid bilayer, from one side of a membrane to the other. Allose is an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3. tmpzr1t_l9r_go_relaxed.owl allose transport biological_process owl:Class GO:0008645 biolink:NamedThing hexose transmembrane transport The process in which hexose is transported across a membrane. Hexoses are aldoses with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexose transport|hexose membrane transport|high-affinity hexose transport|low-affinity hexose transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T10:27:23Z GO:0008647|GO:0008646|GO:0035428 biological_process owl:Class GO:2000829 biolink:NamedThing negative regulation of parathyroid hormone secretion Any process that stops, prevents or reduces the frequency, rate or extent of parathyroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of parathormone secretion|negative regulation of PTH secretion|negative regulation of parathyrin secretion bf 2011-07-26T08:37:57Z biological_process owl:Class GO:0051241 biolink:NamedThing negative regulation of multicellular organismal process Any process that stops, prevents, or reduces the frequency, rate or extent of an organismal process, the processes pertinent to the function of an organism above the cellular level; includes the integrated processes of tissues and organs. tmpzr1t_l9r_go_relaxed.owl downregulation of multicellular organismal process|down regulation of multicellular organismal process|inhibition of multicellular organismal process|down-regulation of multicellular organismal process biological_process owl:Class GO:1905559 biolink:NamedThing positive regulation of mitotic nuclear envelope disassembly Any process that activates or increases the frequency, rate or extent of mitotic nuclear envelope disassembly. tmpzr1t_l9r_go_relaxed.owl up regulation of mitotic nuclear envelope disassembly|up-regulation of mitotic nuclear envelope breakdown|up-regulation of mitotic nuclear envelope degradation|up regulation of mitotic nuclear envelope degradation|upregulation of mitotic nuclear envelope breakdown|positive regulation of mitotic nuclear envelope catabolism|up-regulation of mitotic nuclear envelope catabolism|upregulation of mitotic nuclear envelope catabolism|upregulation of mitotic nuclear envelope disassembly|activation of mitotic nuclear envelope degradation|activation of mitotic nuclear envelope breakdown|positive regulation of mitotic nuclear envelope breakdown|upregulation of mitotic nuclear envelope degradation|positive regulation of mitotic nuclear envelope degradation|up regulation of mitotic nuclear envelope breakdown|activation of mitotic nuclear envelope catabolism|up-regulation of mitotic nuclear envelope disassembly|activation of mitotic nuclear envelope disassembly|up regulation of mitotic nuclear envelope catabolism hbye 2016-10-14T13:15:17Z biological_process owl:Class GO:1905557 biolink:NamedThing regulation of mitotic nuclear envelope disassembly Any process that modulates the frequency, rate or extent of mitotic nuclear envelope disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic nuclear envelope breakdown|regulation of mitotic nuclear envelope catabolism|regulation of mitotic nuclear envelope degradation hbye 2016-10-14T13:14:57Z biological_process owl:Class GO:1902963 biolink:NamedThing negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|negative regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|down-regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|downregulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|inhibition of metalloendoproteinase activity involved in amyloid precursor protein catabolism|down-regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|inhibition of metalloendoproteinase activity involved in APP catabolic process|negative regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|downregulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|down regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|negative regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|downregulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|down-regulation of metalloendoproteinase activity involved in APP catabolic process|downregulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|inhibition of metalloendoproteinase activity involved in amyloid precursor protein breakdown|inhibition of metalloendopeptidase activity involved in amyloid precursor protein catabolism|down-regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|inhibition of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|down-regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|negative regulation of metalloendopeptidase activity involved in APP catabolism|down-regulation of metalloendopeptidase activity involved in APP catabolism|down regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|inhibition of metalloendoprotease activity involved in APP catabolic process|negative regulation of metalloendoproteinase activity involved in APP catabolic process|negative regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|down regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|inhibition of metalloendoprotease activity involved in amyloid precursor protein catabolic process|inhibition of metalloendoprotease activity involved in amyloid precursor protein degradation|negative regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|down regulation of metalloendoprotease activity involved in APP catabolism|down regulation of metalloendoproteinase activity involved in APP catabolism|down regulation of metalloendoproteinase activity involved in APP catabolic process|down-regulation of metalloendopeptidase activity involved in APP catabolic process|inhibition of metalloendoprotease activity involved in amyloid precursor protein breakdown|down-regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|down regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|downregulation of metalloendoprotease activity involved in APP catabolism|inhibition of metalloendoprotease activity involved in APP catabolism|downregulation of metalloendopeptidase activity involved in APP catabolism|negative regulation of metalloendoprotease activity involved in APP catabolism|downregulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|negative regulation of metalloendoproteinase activity involved in APP catabolism|downregulation of metalloendoprotease activity involved in APP catabolic process|negative regulation of metalloendoprotease activity involved in APP catabolic process|down-regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|negative regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|negative regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|inhibition of metalloendopeptidase activity involved in amyloid precursor protein breakdown|negative regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|inhibition of metalloendoprotease activity involved in amyloid precursor protein catabolism|down-regulation of metalloendoproteinase activity involved in APP catabolism|inhibition of metalloendoproteinase activity involved in APP catabolism|negative regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|down-regulation of metalloendoprotease activity involved in APP catabolism|inhibition of metalloendopeptidase activity involved in amyloid precursor protein degradation|downregulation of metalloendopeptidase activity involved in APP catabolic process|downregulation of metalloendoproteinase activity involved in APP catabolism|down-regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|down regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|down regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|inhibition of metalloendopeptidase activity involved in APP catabolism|downregulation of metalloendoproteinase activity involved in APP catabolic process|inhibition of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|downregulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|down-regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|down regulation of metalloendopeptidase activity involved in APP catabolism|negative regulation of metalloendopeptidase activity involved in APP catabolic process|down regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|negative regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|down regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|inhibition of metalloendopeptidase activity involved in APP catabolic process|down-regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|down-regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|down-regulation of metalloendoprotease activity involved in APP catabolic process|downregulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|down regulation of metalloendopeptidase activity involved in APP catabolic process|downregulation of metalloendoprotease activity involved in amyloid precursor protein degradation|negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|down-regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|downregulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|downregulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|down regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|inhibition of metalloendoproteinase activity involved in amyloid precursor protein degradation|down regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|down regulation of metalloendoprotease activity involved in APP catabolic process|downregulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|downregulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|down regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|down-regulation of metalloendoprotease activity involved in amyloid precursor protein degradation sjp 2014-05-06T09:12:01Z biological_process owl:Class GO:1902992 biolink:NamedThing negative regulation of amyloid precursor protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of APP catabolism|inhibition of amyloid precursor protein breakdown|down regulation of APP catabolic process|negative regulation of amyloid precursor protein breakdown|inhibition of amyloid precursor protein catabolism|down regulation of amyloid precursor protein catabolic process|down regulation of APP catabolism|inhibition of amyloid precursor protein degradation|down-regulation of amyloid precursor protein degradation|down regulation of amyloid precursor protein catabolism|negative regulation of APP catabolic process|down-regulation of amyloid precursor protein catabolism|down-regulation of amyloid precursor protein catabolic process|downregulation of amyloid precursor protein catabolic process|down-regulation of APP catabolic process|downregulation of APP catabolism|inhibition of APP catabolic process|downregulation of amyloid precursor protein degradation|down regulation of amyloid precursor protein degradation|downregulation of amyloid precursor protein catabolism|downregulation of APP catabolic process|down-regulation of amyloid precursor protein breakdown|downregulation of amyloid precursor protein breakdown|down-regulation of APP catabolism|inhibition of APP catabolism|negative regulation of amyloid precursor protein degradation|inhibition of amyloid precursor protein catabolic process|down regulation of amyloid precursor protein breakdown|negative regulation of amyloid precursor protein catabolism rl 2014-05-08T14:21:10Z biological_process owl:Class GO:0009425 biolink:NamedThing bacterial-type flagellum basal body One of the three major substructures of the bacterial-type flagellum, the basal body is embedded in the cell envelope (the plasma membrane, peptidoglycan cell wall, and, if one is present, the outer membrane); it houses the secretion apparatus that exports the more distal components and the flagellar motor. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum basal body|flagellar basal body cellular_component owl:Class GO:0086051 biolink:NamedThing membrane repolarization during Purkinje myocyte action potential The process in which ions are transported across a membrane such that the Purkinje myocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-16T11:51:56Z biological_process owl:Class GO:0086013 biolink:NamedThing membrane repolarization during cardiac muscle cell action potential The process in which ions are transported across a membrane such that the cardiac muscle cell plasma membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:23:25Z biological_process owl:Class GO:0030870 biolink:NamedThing Mre11 complex Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins. tmpzr1t_l9r_go_relaxed.owl RAD50-MRE11-NBN complex|RMX complex|Rad50 complex|MRN complex|Rad50-Rad32-Nbs1 complex|MRX complex cellular_component owl:Class GO:1901392 biolink:NamedThing regulation of transforming growth factor beta1 activation Any process that modulates the frequency, rate or extent of transforming growth factor beta1 activation. tmpzr1t_l9r_go_relaxed.owl regulation of TGFB1 activation|regulation of transforming growth factor-beta1 activation|regulation of L-TGF-beta 1 activation|regulation of latent-TGF-beta1 activation|regulation of TGFbeta 1 activation|regulation of TGF-beta 1 activation bf 2012-10-01T10:40:06Z biological_process owl:Class GO:0006245 biolink:NamedThing TDP catabolic process The chemical reactions and pathways resulting in the breakdown of TDP, ribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl TDP breakdown|TDP catabolism|TDP degradation biological_process owl:Class GO:0046043 biolink:NamedThing TDP metabolic process The chemical reactions and pathways involving TDP, ribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl TDP metabolism biological_process owl:Class GO:0018283 biolink:NamedThing iron incorporation into metallo-sulfur cluster The incorporation of iron into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl iron incorporation into metallo-sulphur cluster biological_process owl:Class GO:0016226 biolink:NamedThing iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl iron-sulfur cluster biosynthesis|iron-sulphur cluster assembly biological_process owl:Class GO:0033246 biolink:NamedThing positive regulation of penicillin metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl positive regulation of penicillin metabolism biological_process owl:Class GO:0034250 biolink:NamedThing positive regulation of cellular amide metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amides. tmpzr1t_l9r_go_relaxed.owl positive regulation of amide metabolism biological_process owl:Class GO:0047050 biolink:NamedThing (S)-2-hydroxy-fatty acid dehydrogenase activity Catalysis of the reaction: (S)-2-hydroxystearate + NAD(+) = 2-oxostearate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-2-hydroxy fatty acid dehydrogenase activity|2-hydroxy fatty acid oxidase|(S)-2-hydroxystearate:NAD+ oxidoreductase activity|dehydrogenase, L-2-hydroxy fatty acid|(S)-2-hydroxy-fatty-acid dehydrogenase activity MetaCyc:1.1.1.99-RXN|KEGG_REACTION:R03022|RHEA:11384|EC:1.1.1.99 molecular_function owl:Class GO:2000831 biolink:NamedThing regulation of steroid hormone secretion Any process that modulates the frequency, rate or extent of steroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:38:46Z biological_process owl:Class GO:0097155 biolink:NamedThing fasciculation of sensory neuron axon The collection of sensory neuron axons into a bundle of rods, known as a fascicle. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-16T09:17:34Z biological_process owl:Class GO:0007413 biolink:NamedThing axonal fasciculation The collection of axons into a bundle of rods, known as a fascicle. tmpzr1t_l9r_go_relaxed.owl fasciculation of neuron biological_process owl:Class GO:0070849 biolink:NamedThing response to epidermal growth factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to EGF stimulus|response to epidermal growth factor stimulus mah 2009-08-04T04:26:26Z biological_process owl:Class GO:0070848 biolink:NamedThing response to growth factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to growth factor stimulus mah 2009-08-04T04:24:18Z biological_process owl:Class GO:0032411 biolink:NamedThing positive regulation of transporter activity Any process that activates or increases the activity of a transporter. tmpzr1t_l9r_go_relaxed.owl up regulation of transporter activity|upregulation of transporter activity|up-regulation of transporter activity|activation of transporter activity|stimulation of transporter activity biological_process owl:Class GO:0032409 biolink:NamedThing regulation of transporter activity Any process that modulates the activity of a transporter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905931 biolink:NamedThing negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|down regulation of VSMC differentiation involved in phenotypic dimorphism|inhibition of vascular associated smooth muscle cell differentiation involved in phenotypic switching|down regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|negative regulation of VSMC differentiation involved in phenotypic dimorphism|down-regulation of VSMC differentiation involved in phenotypic dimorphism|downregulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|down-regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|inhibition of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|down-regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|down regulation of VSMC differentiation involved in phenotypic switching|downregulation of vascular smooth muscle cell differentiation involved in phenotypic switching|inhibition of VSMC differentiation involved in phenotypic switching|inhibition of VSMC differentiation involved in phenotypic dimorphism|negative regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|down regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|downregulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|downregulation of VSMC differentiation involved in phenotypic dimorphism|down-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|inhibition of vascular smooth muscle cell differentiation involved in phenotypic switching|negative regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|down regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|down-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|down-regulation of VSMC differentiation involved in phenotypic switching|down regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|inhibition of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|downregulation of VSMC differentiation involved in phenotypic switching|downregulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|negative regulation of VSMC differentiation involved in phenotypic switching rph 2017-02-09T09:21:08Z biological_process owl:Class GO:1905916 biolink:NamedThing negative regulation of cell differentiation involved in phenotypic switching Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl down regulation of cell differentiation involved in phenotypic switching|inhibition of cell differentiation involved in phenotypic switching|down-regulation of cell differentiation involved in phenotypic switching|downregulation of cell differentiation involved in phenotypic switching rph 2017-02-08T12:23:23Z biological_process owl:Class GO:0061686 biolink:NamedThing hercynylcysteine sulfoxide synthase activity Catalysis of the reaction: L-cysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (hercynine) + O2 <=> hercynylcysteine sulfoxide + H2O. tmpzr1t_l9r_go_relaxed.owl hercynylcysteine S-oxide synthase|hercynylcysteine sulfoxide synthase https://github.com/geneontology/go-ontology/issues/11163 RHEA:42704|EC:1.14.99.51 dph 2015-03-06T15:08:51Z molecular_function owl:Class GO:0016705 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous EC:1.14.-.- molecular_function owl:Class GO:0062101 biolink:NamedThing peptidyl-aspartic acid 3-dioxygenase activity Catalysis of the reaction: protein L-aspartate + 2-oxoglutarate + O2 = protein 3-hydroxy-L-aspartate + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl peptide-aspartate beta-dioxygenase activity|aspartate beta-hydroxylase activity|aspartyl/asparaginyl beta-hydroxylase activity|peptide-L-aspartate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity|aspartylpeptide beta-dioxygenase activity https://github.com/geneontology/go-ontology/issues/17842 RHEA:11508|MetaCyc:PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|EC:1.14.11.16 dph 2018-12-06T14:01:15Z GO:0004597 molecular_function owl:Class GO:0016706 biolink:NamedThing 2-oxoglutarate-dependent dioxygenase activity Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|2-oxoglutarate dioxygenase activity EC:1.14.11.-|Reactome:R-HSA-6783455|Reactome:R-HSA-1234164 GO:0010302 molecular_function owl:Class GO:1902681 biolink:NamedThing regulation of replication fork arrest at rDNA repeats Any process that modulates the frequency, rate or extent of replication fork arrest at rDNA repeats. tmpzr1t_l9r_go_relaxed.owl regulation of replication fork blocking at rDNA repeats|regulation of replication fork arrest at ribosomal DNA repeats mah 2014-02-05T16:59:21Z biological_process owl:Class GO:0090329 biolink:NamedThing regulation of DNA-dependent DNA replication Any process that modulates the rate, frequency, or extent of DNA-dependent DNA replication, the process in which new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:42:04Z biological_process owl:Class GO:0035515 biolink:NamedThing oxidative RNA demethylase activity Catalysis of the removal of a methyl group from one or more nucleosides within a RNA molecule involving the oxidation (i.e. electron loss) of one or more atoms. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate-dependent RNA demethylase https://github.com/geneontology/go-ontology/issues/21160 Reactome:R-HSA-8857692 bf 2010-04-30T02:37:08Z molecular_function owl:Class GO:1905932 biolink:NamedThing positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl activation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|up regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|upregulation of VSMC differentiation involved in phenotypic dimorphism|positive regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|activation of VSMC differentiation involved in phenotypic dimorphism|up-regulation of VSMC differentiation involved in phenotypic dimorphism|upregulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|up-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|up regulation of VSMC differentiation involved in phenotypic switching|up-regulation of VSMC differentiation involved in phenotypic switching|activation of vascular smooth muscle cell differentiation involved in phenotypic switching|upregulation of VSMC differentiation involved in phenotypic switching|positive regulation of VSMC differentiation involved in phenotypic dimorphism|positive regulation of VSMC differentiation involved in phenotypic switching|upregulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|activation of VSMC differentiation involved in phenotypic switching|upregulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|up-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|positive regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|up regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|up regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching|up-regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|up regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|activation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|upregulation of vascular smooth muscle cell differentiation involved in phenotypic switching|positive regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|up-regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|up regulation of VSMC differentiation involved in phenotypic dimorphism|activation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism rph 2017-02-09T09:21:17Z biological_process owl:Class GO:1905065 biolink:NamedThing positive regulation of vascular associated smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of vascular smooth muscle cell differentiation|upregulation of vascular associated smooth muscle cell differentiation|up regulation of vascular smooth muscle cell differentiation|up-regulation of vascular associated smooth muscle cell differentiation|up-regulation of VSMC differentiation|positive regulation of vascular smooth muscle cell differentiation|up regulation of vascular associated smooth muscle cell differentiation|activation of vascular smooth muscle cell differentiation|activation of vascular associated smooth muscle cell differentiation|upregulation of VSMC differentiation|upregulation of vascular smooth muscle cell differentiation|up regulation of VSMC differentiation|activation of VSMC differentiation|positive regulation of VSMC differentiation rph 2016-03-21T11:15:13Z biological_process owl:Class GO:0034037 biolink:NamedThing purine ribonucleoside bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a purine ribonucleoside bisphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside bisphosphate breakdown|purine ribonucleoside bisphosphate catabolism|purine ribonucleoside bisphosphate degradation biological_process owl:Class GO:0034034 biolink:NamedThing purine nucleoside bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a purine nucleoside bisphosphate, a compound consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside bisphosphate breakdown|purine nucleoside bisphosphate catabolism|purine nucleoside bisphosphate degradation biological_process owl:Class GO:0106082 biolink:NamedThing sucrose import across plasma membrane The directed movement of sucrose from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-28T18:16:29Z biological_process owl:Class GO:0098704 biolink:NamedThing carbohydrate import across plasma membrane The directed movement of a carbohydrate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl carbohydrate import into cell pr 2012-05-31T02:45:02Z GO:0097319 biological_process owl:Class GO:0061257 biolink:NamedThing mesonephric glomerular visceral epithelial cell development The process whose specific outcome is the progression of a mesonephric glomerular visceral epithelial cell over time, from its formation to the mature structure. A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:10:40Z biological_process owl:Class GO:0072015 biolink:NamedThing glomerular visceral epithelial cell development The process whose specific outcome is the progression of a glomerular visceral epithelial cell over time, from its formation to the mature structure. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells. tmpzr1t_l9r_go_relaxed.owl podocyte development mah 2010-01-25T02:12:45Z biological_process owl:Class GO:0031032 biolink:NamedThing actomyosin structure organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. The myosin may be organized into filaments. tmpzr1t_l9r_go_relaxed.owl actomyosin organization|actomyosin structure organization and biogenesis|actomyosin structure organisation Note that this term is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins. biological_process owl:Class GO:0032698 biolink:NamedThing negative regulation of interleukin-15 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-15 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-15 biosynthetic process|downregulation of interleukin-15 production|negative regulation of IL-15 production|down-regulation of interleukin-15 production|inhibition of interleukin-15 production|down regulation of interleukin-15 production GO:0045373 biological_process owl:Class GO:0001818 biolink:NamedThing negative regulation of cytokine production Any process that stops, prevents, or reduces the rate of production of a cytokine. tmpzr1t_l9r_go_relaxed.owl down regulation of cytokine production|negative regulation of cytokine formation|negative regulation of cytokine biosynthesis|negative regulation of cytokine secretion|negative regulation of cytokine synthesis|inhibition of cytokine biosynthetic process|down regulation of cytokine biosynthetic process|negative regulation of cytokine anabolism|down-regulation of cytokine production|downregulation of cytokine production|negative regulation of cytokine biosynthetic process|inhibition of cytokine production|downregulation of cytokine biosynthetic process|down-regulation of cytokine biosynthetic process GO:0050710|GO:0042036 biological_process owl:Class GO:0035639 biolink:NamedThing purine ribonucleoside triphosphate binding Binding to a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine NTP binding bf 2011-01-14T02:46:42Z molecular_function owl:Class GO:1901265 biolink:NamedThing nucleoside phosphate binding Binding to nucleoside phosphate. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-17T12:59:58Z molecular_function owl:Class GO:0048529 biolink:NamedThing magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity Catalysis of the reaction: magnesium protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 H+ + 3 O2 = divinylprotochlorophyllide + 3 NADP+ + 5 H2O. tmpzr1t_l9r_go_relaxed.owl Mg-protoporphyrin IX monomethyl ester oxidative cyclase activity|Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase activity|magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) EC:1.14.13.81|RHEA:33235 molecular_function owl:Class GO:0099583 biolink:NamedThing neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration Any neurotransmitter receptor activity that is involved in regulating the concentration of calcium in the postsynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels molecular_function owl:Class GO:0098960 biolink:NamedThing postsynaptic neurotransmitter receptor activity Neurotransmitter receptor activity occuring in the postsynaptic membrane during synaptic transmission. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor activity involved in chemical synaptic transmission molecular_function owl:Class GO:0051361 biolink:NamedThing peptide cross-linking via L-lysine 5-imidazolinone glycine The formation of a fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a lysine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. tmpzr1t_l9r_go_relaxed.owl biosynthetic process of protein-protein cross-link via L-lysine 5-imidazolinone glycine|biosynthesis of protein-protein cross-link via L-lysine 5-imidazolinone glycine RESID:AA0381 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0018298 biolink:NamedThing protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103044 biolink:NamedThing ribosomal protein S6 glutamate-glutamate ligase activity Catalysis of the reaction: L-glutamate + ATP + a [protein] C-terminal L-glutamate = ADP + hydrogenphosphate + H+ + a [protein] with C-terminal alpha-L-glutamate-alpha-L-glutamate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6726 molecular_function owl:Class GO:0018169 biolink:NamedThing ribosomal S6-glutamic acid ligase activity Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102921 biolink:NamedThing mannosylglycerate synthase activity Catalysis of the reaction: GDP-alpha-D-mannose + D-glycerate <=> H+ + 2-(alpha-D-mannosyl)-D-glycerate + GDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8849|RHEA:30639|EC:2.4.1.269 molecular_function owl:Class GO:0071797 biolink:NamedThing LUBAC complex A ubiquitin ligase complex that catalyzes linear head-to-tail polyubiquitin conjugation on its targets. In human the complex consists of RBCK1, RNF31 and SHARPIN, and has an MW of approximately 600 kDa, suggesting a heteromultimeric assembly of its subunits. LUBAC stands for Linear Ubiquitin Chain Assembly Complex. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-02T04:09:55Z cellular_component owl:Class GO:0000151 biolink:NamedThing ubiquitin ligase complex A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006047 biolink:NamedThing UDP-N-acetylglucosamine metabolic process The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine metabolism biological_process owl:Class GO:0006793 biolink:NamedThing phosphorus metabolic process The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). tmpzr1t_l9r_go_relaxed.owl phosphorus metabolism biological_process owl:Class GO:0048578 biolink:NamedThing positive regulation of long-day photoperiodism, flowering Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl stimulation of long-day photoperiodism, flowering|up regulation of long-day photoperiodism, flowering|activation of long-day photoperiodism, flowering|upregulation of long-day photoperiodism, flowering|up-regulation of long-day photoperiodism, flowering biological_process owl:Class GO:0048586 biolink:NamedThing regulation of long-day photoperiodism, flowering Any process that modulates the frequency, rate or extent of long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905194 biolink:NamedThing positive regulation of chloroplast fission Any process that activates or increases the frequency, rate or extent of chloroplast fission. tmpzr1t_l9r_go_relaxed.owl positive regulation of chloroplast division|upregulation of chloroplast fission|up-regulation of chloroplast division|activation of chloroplast fission|up regulation of chloroplast division|activation of chloroplast division|up-regulation of chloroplast fission|up regulation of chloroplast fission|upregulation of chloroplast division Any process that modulates the rate, frequency or extent of chloroplast fission. Chloroplast fission is the division of a chloroplast within a cell to form two or more separate chloroplast compartments. lr 2016-05-10T19:07:51Z biological_process owl:Class GO:1905192 biolink:NamedThing regulation of chloroplast fission Any process that modulates the frequency, rate or extent of chloroplast fission. tmpzr1t_l9r_go_relaxed.owl regulation of chloroplast division Any process that modulates the rate, frequency or extent of chloroplast fission. Chloroplast fission is the division of a chloroplast within a cell to form two or more separate chloroplast compartments. lr 2016-05-10T19:07:34Z biological_process owl:Class GO:0016453 biolink:NamedThing C-acetyltransferase activity Catalysis of the transfer of an acetyl group to a carbon atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016408 biolink:NamedThing C-acyltransferase activity Catalysis of the transfer of an acyl group to a carbon atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902914 biolink:NamedThing regulation of protein polyubiquitination Any process that modulates the frequency, rate or extent of protein polyubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of protein polyubiquitylation|regulation of polyubiquitin|regulation of protein polyubiquitinylation di 2014-04-18T22:09:52Z biological_process owl:Class GO:0150152 biolink:NamedThing negative regulation of interleukin-17A production Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-17A production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-17A biosynthetic process bc 2019-12-11T07:45:24Z biological_process owl:Class GO:0032700 biolink:NamedThing negative regulation of interleukin-17 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-17 production|negative regulation of interleukin-17 secretion|negative regulation of interleukin-17 biosynthetic process|negative regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion|inhibition of interleukin-17 production|negative regulation of CTLA-8 production|negative regulation of IL-17 production|downregulation of interleukin-17 production GO:0045379|GO:1905077 biological_process owl:Class GO:1905627 biolink:NamedThing regulation of serotonin biosynthetic process Any process that modulates the frequency, rate or extent of serotonin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of serotonin formation|regulation of serotonin synthesis|regulation of serotonin biosynthesis|regulation of serotonin anabolism pad 2016-10-31T14:26:20Z biological_process owl:Class GO:1903047 biolink:NamedThing mitotic cell cycle process A process that is part of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2014-05-22T14:22:34Z biological_process owl:Class GO:0060588 biolink:NamedThing negative regulation of lipoprotein lipid oxidation Any process that decreases the rate, frequency or extent of lipoprotein lipid oxidation. Lipoprotein lipid oxidation is the modification of a lipoprotein by oxidation of the lipid group. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-08T02:30:49Z biological_process owl:Class GO:1902639 biolink:NamedThing propan-2-ol metabolic process The chemical reactions and pathways involving propan-2-ol. tmpzr1t_l9r_go_relaxed.owl Isopropanol metabolic process|Isopropyl alcohol metabolic process|propan-2-ol metabolism tt 2014-01-21T13:57:13Z biological_process owl:Class GO:1902652 biolink:NamedThing secondary alcohol metabolic process The chemical reactions and pathways involving secondary alcohol. tmpzr1t_l9r_go_relaxed.owl secondary alcohol metabolism tt 2014-01-22T10:14:52Z biological_process owl:Class GO:1904036 biolink:NamedThing negative regulation of epithelial cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of epithelial cell apoptotic process|down-regulation of epithelial cell apoptotic process|negative regulation of epitheliocyte apoptosis|down-regulation of epithelial cell apoptosis|down regulation of epitheliocyte apoptosis|down regulation of epitheliocyte apoptotic process|down-regulation of epitheliocyte apoptosis|downregulation of epithelial cell apoptosis|downregulation of epitheliocyte apoptosis|down regulation of epithelial cell apoptosis|inhibition of epithelial cell apoptotic process|downregulation of epitheliocyte apoptotic process|inhibition of epitheliocyte apoptotic process|down-regulation of epitheliocyte apoptotic process|inhibition of epitheliocyte apoptosis|downregulation of epithelial cell apoptotic process|negative regulation of epitheliocyte apoptotic process|inhibition of epithelial cell apoptosis|negative regulation of epithelial cell apoptosis sl 2015-03-13T22:05:47Z biological_process owl:Class GO:1904035 biolink:NamedThing regulation of epithelial cell apoptotic process Any process that modulates the frequency, rate or extent of epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of epitheliocyte apoptosis|regulation of epitheliocyte apoptotic process|regulation of epithelial cell apoptosis sl 2015-03-13T22:05:41Z biological_process owl:Class GO:1901149 biolink:NamedThing salicylic acid binding Binding to salicylic acid. tmpzr1t_l9r_go_relaxed.owl salicylic acid receptor dhl 2012-07-16T05:26:38Z molecular_function owl:Class GO:0033293 biolink:NamedThing monocarboxylic acid binding Binding to a monocarboxylic acid, any organic acid containing one carboxyl (COOH) group or anion (COO-). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044257 biolink:NamedThing cellular protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular protein breakdown|cellular protein degradation|cellular protein catabolism biological_process owl:Class GO:0044265 biolink:NamedThing cellular macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular biopolymer catabolic process|cellular macromolecule degradation|cellular macromolecule breakdown|cellular macromolecule catabolism GO:0034962 biological_process owl:Class GO:1900791 biolink:NamedThing shamixanthone metabolic process The chemical reactions and pathways involving shamixanthone. tmpzr1t_l9r_go_relaxed.owl shamixanthone metabolism di 2012-06-04T09:40:20Z biological_process owl:Class GO:0042180 biolink:NamedThing cellular ketone metabolic process The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups. tmpzr1t_l9r_go_relaxed.owl ketone metabolism biological_process owl:Class GO:2000573 biolink:NamedThing positive regulation of DNA biosynthetic process Any process that activates or increases the frequency, rate or extent of DNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of DNA biosynthesis|positive regulation of DNA formation|positive regulation of DNA anabolism|positive regulation of DNA synthesis yaf 2011-04-04T10:01:20Z biological_process owl:Class GO:0010557 biolink:NamedThing positive regulation of macromolecule biosynthetic process Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001051 biolink:NamedThing positive regulation of tendon cell differentiation Any process that activates or increases the frequency, rate or extent of tendon cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of tenocyte differentiation|positive regulation of muscle attachment cell differentiation yaf 2011-09-01T09:20:42Z biological_process owl:Class GO:2001049 biolink:NamedThing regulation of tendon cell differentiation Any process that modulates the frequency, rate or extent of tendon cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of muscle attachment cell differentiation|regulation of tenocyte differentiation yaf 2011-09-01T09:20:32Z biological_process owl:Class GO:0047542 biolink:NamedThing 2-furoyl-CoA dehydrogenase activity Catalysis of the reaction: 2-furoyl-CoA + A + H(2)O = 5-hydroxy-2-furoyl-CoA + AH(2) + H(+). tmpzr1t_l9r_go_relaxed.owl 2-furoyl coenzyme A hydroxylase activity|2-furoyl-CoA:(acceptor) 5-oxidoreductase (hydroxylating)|furoyl-CoA hydroxylase activity|2-furoyl coenzyme A dehydrogenase activity|2-furoyl-CoA:acceptor 5-oxidoreductase (hydroxylating) MetaCyc:2-FUROYL-COA-DEHYDROGENASE-RXN|RHEA:21480|EC:1.3.99.8|KEGG_REACTION:R02987 molecular_function owl:Class GO:0016627 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-CH group of donors, other acceptors Reactome:R-HSA-2995334|Reactome:R-HSA-9661710|EC:1.3.-.- molecular_function owl:Class GO:0034501 biolink:NamedThing protein localization to kinetochore Any process in which a protein is transported to, or maintained at, the kinetochore. tmpzr1t_l9r_go_relaxed.owl condensin localization to kinetochore|protein localisation to kinetochore biological_process owl:Class GO:1903083 biolink:NamedThing protein localization to condensed chromosome A process in which a protein is transported to, or maintained in, a location within a condensed chromosome. tmpzr1t_l9r_go_relaxed.owl protein localisation to condensed chromosome|protein localisation in condensed chromosome|protein localization in condensed chromosome kmv 2014-05-29T20:31:25Z biological_process owl:Class GO:0070040 biolink:NamedThing rRNA (adenine-C2-)-methyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + adenine(2503) in 23S rRNA = S-adenosyl-L-homocysteine + 5'-deoxyadenosine + L-methionine + rRNA containing C2-methyladenine(2503) in 23S rRNA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11586|EC:2.1.1.192 molecular_function owl:Class GO:0016433 biolink:NamedThing rRNA (adenine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyladenine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902869 biolink:NamedThing regulation of amacrine cell differentiation Any process that modulates the frequency, rate or extent of amacrine cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of amacrine neuron differentiation mr 2014-04-03T15:24:35Z biological_process owl:Class GO:0045664 biolink:NamedThing regulation of neuron differentiation Any process that modulates the frequency, rate or extent of neuron differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904677 biolink:NamedThing positive regulation of somatic stem cell division Any process that activates or increases the frequency, rate or extent of somatic stem cell division. tmpzr1t_l9r_go_relaxed.owl positive regulation of somatic stem cell renewal|activation of somatic stem cell renewal|upregulation of somatic stem cell division|up-regulation of somatic stem cell division|up regulation of somatic stem cell division|up-regulation of somatic stem cell renewal|activation of somatic stem cell division|up regulation of somatic stem cell renewal|upregulation of somatic stem cell renewal rph 2015-09-14T08:47:34Z biological_process owl:Class GO:0051781 biolink:NamedThing positive regulation of cell division Any process that activates or increases the frequency, rate or extent of cell division. tmpzr1t_l9r_go_relaxed.owl up regulation of cell division|stimulation of cell division|up-regulation of cell division|activation of cell division|upregulation of cell division biological_process owl:Class GO:0044307 biolink:NamedThing dendritic branch A dendrite arising from another dendrite. tmpzr1t_l9r_go_relaxed.owl dendrite branch|secondary dendrite NIF_Subcellular:sao884265541 jl 2010-02-05T04:18:53Z cellular_component owl:Class GO:0030425 biolink:NamedThing dendrite A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Dendrite|NIF_Subcellular:sao1211023249 cellular_component owl:Class GO:1900282 biolink:NamedThing regulation of cellobiose catabolic process Any process that modulates the frequency, rate or extent of cellobiose catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellobiose catabolism tt 2012-04-05T12:28:50Z biological_process owl:Class GO:2000930 biolink:NamedThing regulation of cellobiose metabolic process Any process that modulates the frequency, rate or extent of cellobiose metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellobiose metabolism tt 2011-08-01T12:42:53Z biological_process owl:Class GO:0032734 biolink:NamedThing positive regulation of interleukin-11 production Any process that activates or increases the frequency, rate, or extent of interleukin-11 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-11 production|positive regulation of interleukin-11 secretion|stimulation of interleukin-11 production|up regulation of interleukin-11 production|up-regulation of interleukin-11 production|positive regulation of interleukin-11 biosynthetic process|activation of interleukin-11 production|upregulation of interleukin-11 production GO:0150171|GO:0045365 biological_process owl:Class GO:0032654 biolink:NamedThing regulation of interleukin-11 production Any process that modulates the frequency, rate, or extent of interleukin-11 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-11 secretion|regulation of interleukin-11 biosynthetic process|regulation of IL-11 production GO:0045363|GO:0150169 biological_process owl:Class GO:0051099 biolink:NamedThing positive regulation of binding Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. tmpzr1t_l9r_go_relaxed.owl up-regulation of binding|stimulation of binding|up regulation of binding|upregulation of binding|activation of binding biological_process owl:Class GO:0048865 biolink:NamedThing stem cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a stem cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045165 biolink:NamedThing cell fate commitment The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. tmpzr1t_l9r_go_relaxed.owl Note that this term was 'cell fate determination' but the term name was changed to better match its existing definition and the child term 'cell fate determination; GO:0001709' was also created. biological_process owl:Class GO:1902216 biolink:NamedThing positive regulation of interleukin-4-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of interleukin-4-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of interleukin-4-mediated signaling pathway|up-regulation of interleukin-4-mediated signalling pathway|up regulation of IL-4-mediated signaling pathway|up regulation of interleukin-4-mediated signaling pathway|activation of interleukin-4-mediated signalling pathway|up-regulation of IL-4-mediated signaling pathway|upregulation of IL-4-mediated signaling pathway|up regulation of interleukin-4-mediated signalling pathway|upregulation of interleukin-4-mediated signalling pathway|positive regulation of IL-4-mediated signaling pathway|activation of interleukin-4-mediated signaling pathway|up-regulation of interleukin-4-mediated signaling pathway|activation of IL-4-mediated signaling pathway|positive regulation of interleukin-4-mediated signalling pathway lb 2013-06-12T12:53:20Z biological_process owl:Class GO:0046089 biolink:NamedThing cytosine biosynthetic process The chemical reactions and pathways resulting in the formation of cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives. tmpzr1t_l9r_go_relaxed.owl cytosine synthesis|cytosine anabolism|cytosine formation|cytosine biosynthesis biological_process owl:Class GO:0019858 biolink:NamedThing cytosine metabolic process The chemical reactions and pathways involving cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives. tmpzr1t_l9r_go_relaxed.owl cytosine metabolism biological_process owl:Class GO:0030777 biolink:NamedThing (S)-scoulerine 9-O-methyltransferase activity Catalysis of the reaction: (S)-scoulerine + S-adenosyl-L-methionine(1+) = (S)-tetrahydrocolumbamine + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(S)-scoulerine 9-O-methyltransferase activity|S-adenosyl-L-methionine:(S)-scoclaurine 9-O-methyltransferase activity EC:2.1.1.117|RHEA:23808|KEGG_REACTION:R03835|MetaCyc:2.1.1.117-RXN molecular_function owl:Class GO:0042862 biolink:NamedThing achromobactin catabolic process The chemical reactions and pathways resulting in the breakdown of achromobactin, a citrate siderophore. tmpzr1t_l9r_go_relaxed.owl achromobactin degradation|achromobactin breakdown|achromobactin catabolism biological_process owl:Class GO:1901616 biolink:NamedThing organic hydroxy compound catabolic process The chemical reactions and pathways resulting in the breakdown of organic hydroxy compound. tmpzr1t_l9r_go_relaxed.owl organic hydroxy compound catabolism|organic hydroxy compound breakdown|organic hydroxy compound degradation pr 2012-11-13T12:54:31Z biological_process owl:Class GO:0102900 biolink:NamedThing dehydroabietadienal hydroxylase activity Catalysis of the reaction: dehydroabietadienal + NADPH + O2 <=> dehydroabietic acid + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8534 molecular_function owl:Class GO:0018947 biolink:NamedThing anaerobic organosilicon metabolic process The chemical reactions and pathways involving organosilicons, organic compounds that contain silicon, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic organosilicone metabolism|anaerobic organosilicone metabolic process|anaerobic organosilicon metabolism UM-BBD_pathwayID:osi biological_process owl:Class GO:0018945 biolink:NamedThing organosilicon metabolic process The chemical reactions and pathways involving any organosilicon, organic compounds that contain silicon, a nonmetal element analogous to carbon. tmpzr1t_l9r_go_relaxed.owl organosilicone metabolic process|organosilicone metabolism|organosilicon metabolism UM-BBD_pathwayID:osi biological_process owl:Class GO:0102177 biolink:NamedThing 24-methylenelophenol methyl oxidase activity Catalysis of the reaction: 24-methylenelophenol + O2 + NADH + H+ <=> 4alpha-hydroxymethyl-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11930|RHEA:58872|EC:1.14.18.11 molecular_function owl:Class GO:1901389 biolink:NamedThing negative regulation of transforming growth factor beta activation Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta activation. tmpzr1t_l9r_go_relaxed.owl down-regulation of TGFB activation|down regulation of TGF-beta activation|down regulation of L-TGF-beta activation|down regulation of TGFB activation|inhibition of TGF-beta activation|negative regulation of TGFbeta activation|negative regulation of TGF-beta activation|down regulation of latent TGF-beta activation|negative regulation of latent TGF-beta activation|down-regulation of transforming growth factor beta activation|downregulation of latent TGF-beta activation|downregulation of transforming growth factor beta activation|down-regulation of TGF-B activation|negative regulation of TGFB activation|inhibition of TGF-B activation|down-regulation of L-TGF-beta activation|downregulation of TGFB activation|downregulation of TGFbeta activation|inhibition of TGFB activation|down-regulation of TGF-beta activation|downregulation of TGF-beta activation|negative regulation of L-TGF-beta activation|down regulation of TGF-B activation|down regulation of TGFbeta activation|down regulation of transforming growth factor beta activation|down-regulation of TGFbeta activation|negative regulation of TGF-B activation|inhibition of L-TGF-beta activation|downregulation of TGF-B activation|inhibition of transforming growth factor beta activation|downregulation of L-TGF-beta activation|down-regulation of latent TGF-beta activation|inhibition of TGFbeta activation|inhibition of latent TGF-beta activation bf 2012-10-01T10:33:09Z biological_process owl:Class GO:1901388 biolink:NamedThing regulation of transforming growth factor beta activation Any process that modulates the frequency, rate or extent of transforming growth factor beta activation. tmpzr1t_l9r_go_relaxed.owl regulation of TGF-B activation|regulation of TGF-beta activation|regulation of TGFB activation|regulation of TGFbeta activation|regulation of L-TGF-beta activation|regulation of latent TGF-beta activation bf 2012-10-01T10:32:00Z biological_process owl:Class GO:1902166 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|inhibition of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|down-regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|downregulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|inhibition of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|downregulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|down-regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|down regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator lb 2013-05-22T12:45:15Z biological_process owl:Class GO:1902165 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis lb 2013-05-22T12:45:10Z biological_process owl:Class GO:1904639 biolink:NamedThing cellular response to resveratrol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a resveratrol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T17:07:44Z biological_process owl:Class GO:2000588 biolink:NamedThing positive regulation of platelet-derived growth factor receptor-beta signaling pathway Any process that activates or increases the frequency, rate or extent of platelet-derived growth factor receptor-beta signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of platelet-derived growth factor receptor-beta signalling pathway|positive regulation of PDGFR-beta signaling pathway|positive regulation of PDGF receptor-beta signaling pathway|positive regulation of betaPDGF receptor signaling pathway bf 2011-04-07T03:27:58Z biological_process owl:Class GO:0007053 biolink:NamedThing spindle assembly involved in male meiosis The aggregation, arrangement and bonding together of a set of components to form the spindle during a meiotic cell cycle in males. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019482 biolink:NamedThing beta-alanine metabolic process The chemical reactions and pathways involving beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins. tmpzr1t_l9r_go_relaxed.owl beta-alanine metabolism Wikipedia:Beta-alanine biological_process owl:Class GO:0006520 biolink:NamedThing cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl amino acid and derivative metabolism|amino acid metabolic process|cellular amino acid metabolism|cellular amino acid and derivative metabolic process GO:0006519 biological_process owl:Class GO:1903818 biolink:NamedThing positive regulation of voltage-gated potassium channel activity Any process that activates or increases the frequency, rate or extent of voltage-gated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl upregulation of voltage gated potassium channel activity|positive regulation of voltage-sensitive potassium channel|activation of voltage-sensitive potassium channel|activation of voltage-dependent potassium channel activity|up-regulation of voltage-gated potassium channel activity|activation of voltage-gated potassium channel activity|activation of voltage gated potassium channel activity|up-regulation of voltage gated potassium channel activity|upregulation of voltage-gated potassium channel activity|up regulation of voltage-sensitive potassium channel|activation of voltage-gated potassium ion channel activity|up regulation of voltage-dependent potassium channel activity|up-regulation of voltage-gated potassium ion channel activity|positive regulation of voltage-gated potassium ion channel activity|upregulation of voltage-gated potassium ion channel activity|upregulation of voltage-dependent potassium channel activity|up-regulation of voltage-dependent potassium channel activity|up regulation of voltage-gated potassium ion channel activity|up regulation of voltage gated potassium channel activity|upregulation of voltage-sensitive potassium channel|positive regulation of voltage-dependent potassium channel activity|positive regulation of voltage gated potassium channel activity|up-regulation of voltage-sensitive potassium channel|up regulation of voltage-gated potassium channel activity sl 2015-01-16T17:22:18Z biological_process owl:Class GO:1990665 biolink:NamedThing AnxA2-p11 complex A heterotetrameric protein complex comprising two Annexin A2 (AnxA2) monomers and two copies of its binding partner, S100 protein p11 (S100A10). tmpzr1t_l9r_go_relaxed.owl AnxA2:S100A10 heterotetramer|(A2.p11)2 complex|AnxA2.p11 complex|Annexin A2-p11 complex|Annexin A2 tetramer|(p11)2.(AnxA2)2 complex bf 2015-03-02T10:07:42Z cellular_component owl:Class GO:0006304 biolink:NamedThing DNA modification The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043412 biolink:NamedThing macromolecule modification The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033673 biolink:NamedThing negative regulation of kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl inhibition of kinase activity|kinase inhibitor|down-regulation of kinase activity|downregulation of kinase activity|down regulation of kinase activity biological_process owl:Class GO:1904637 biolink:NamedThing cellular response to ionomycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ionomycin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T14:39:25Z biological_process owl:Class GO:0071398 biolink:NamedThing cellular response to fatty acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:39:56Z biological_process owl:Class GO:0060001 biolink:NamedThing minus-end directed microfilament motor activity A motor activity that generates movement along a microfilament towards the minus end, driven by ATP hydrolysis. The minus end of an actin filament is the end that does not preferentially add actin monomers. tmpzr1t_l9r_go_relaxed.owl minus-end directed actin filament motor activity|minus-end directed actin-filament motor activity|pointed-end directed actin-filament motor activity molecular_function owl:Class GO:0000146 biolink:NamedThing microfilament motor activity A motor activity that generates movement along a microfilament, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl actin-activated ATPase activity|muscle motor activity|actin-dependent ATPase activity|myosin ATPase activity|actin filament motor activity|actin-filament motor activity https://github.com/geneontology/go-ontology/issues/20877 Reactome:R-HSA-432237|Reactome:R-HSA-9023171|Reactome:R-HSA-2316352|EC:5.6.1.8 GO:0030898 molecular_function owl:Class GO:0042650 biolink:NamedThing prothylakoid membrane The membrane of prothylakoids, underdeveloped thylakoids found in etioplasts, lacking competent photosynthetic membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0055035 biolink:NamedThing plastid thylakoid membrane The lipid bilayer membrane of any thylakoid within a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900425 biolink:NamedThing negative regulation of defense response to bacterium Any process that stops, prevents or reduces the frequency, rate or extent of defense response to bacterium. tmpzr1t_l9r_go_relaxed.owl inhibition of response to pathogenic bacteria (incompatible interaction)|negative regulation of antibacterial peptide activity|negative regulation of defence response to bacterium|inhibition of defence response to pathogenic bacterium, incompatible interaction|down regulation of defence response to bacterium|inhibition of defense response to bacteria|inhibition of resistance response to pathogenic bacteria|downregulation of defence response to bacterium|down-regulation of antibacterial peptide activity|inhibition of defense response to bacterium|negative regulation of defense response to bacteria|down-regulation of defense response to bacterium|down-regulation of defence response to bacteria|downregulation of defense response to bacteria|down-regulation of defence response to bacterium|inhibition of defence response to bacterium|inhibition of defence response to bacteria|downregulation of antibacterial peptide activity|down regulation of defense response to bacteria|inhibition of defence response to pathogenic bacteria, incompatible interaction|inhibition of response to pathogenic bacterium (incompatible interaction)|negative regulation of defense response to bacterium, incompatible interaction|inhibition of defense response to bacterium, incompatible interaction|inhibition of antibacterial peptide activity|downregulation of defence response to bacteria|downregulation of defense response to bacterium|negative regulation of defence response to bacteria|down regulation of antibacterial peptide activity|down-regulation of defense response to bacteria|down regulation of defence response to bacteria|inhibition of resistance response to pathogenic bacterium|down regulation of defense response to bacterium dhl 2012-04-24T10:12:54Z GO:1902478 biological_process owl:Class GO:1900424 biolink:NamedThing regulation of defense response to bacterium Any process that modulates the frequency, rate or extent of defense response to bacterium. tmpzr1t_l9r_go_relaxed.owl regulation of resistance response to pathogenic bacteria|regulation of defence response to bacteria|regulation of resistance response to pathogenic bacterium|regulation of defense response to bacterium, incompatible interaction|regulation of defence response to pathogenic bacterium, incompatible interaction|regulation of antibacterial peptide activity|regulation of defence response to bacterium, incompatible interaction|regulation of defence response to bacterium|regulation of defense response to bacteria|regulation of defence response to pathogenic bacteria, incompatible interaction dhl 2012-04-24T10:12:43Z GO:1902477 biological_process owl:Class GO:0036075 biolink:NamedThing replacement ossification Ossification that requires the replacement of a preexisting tissue prior to bone tissue formation. tmpzr1t_l9r_go_relaxed.owl indirect ossification bf 2011-12-19T01:53:16Z biological_process owl:Class GO:0001503 biolink:NamedThing ossification The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance. tmpzr1t_l9r_go_relaxed.owl bone formation|osteogenesis|bone biosynthesis Wikipedia:Ossification Note that this term does not have a 'developmental process' parent because ossification isn't necessarily developmental, can also occur as part of bone remodeling. Instead use 'ossification involved in bone maturation ; GO:0043931'. biological_process owl:Class GO:1904296 biolink:NamedThing negative regulation of osmolarity-sensing cation channel activity Any process that stops, prevents or reduces the frequency, rate or extent of osmolarity-sensing cation channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of osmolarity-sensing cation channel activity|down regulation of osmolarity-sensing cation channel activity|downregulation of osmolarity-sensing cation channel activity|inhibition of osmolarity-sensing cation channel activity sl 2015-06-09T17:35:46Z biological_process owl:Class GO:0052733 biolink:NamedThing quinate 3-dehydrogenase (NADP+) activity Catalysis of the reaction: quinate + NADP+ = 3-dehydroquinate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl quinate:NADP 3-oxidoreductase activity|quinic dehydrogenase activity|quinate:NADP(+) 3-oxidoreductase activity KEGG_REACTION:R06846|EC:1.1.1.282|RHEA:18425 ai 2011-08-16T04:23:47Z molecular_function owl:Class GO:0042167 biolink:NamedThing heme catabolic process The chemical reactions and pathways resulting in the breakdown of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. tmpzr1t_l9r_go_relaxed.owl haem catabolic process|heme degradation|haem catabolism|heme breakdown|heme catabolism biological_process owl:Class GO:0006787 biolink:NamedThing porphyrin-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. tmpzr1t_l9r_go_relaxed.owl porphyrin breakdown|porphyrin catabolic process|porphyrin catabolism|porphyrin degradation biological_process owl:Class GO:0019402 biolink:NamedThing galactitol metabolic process The chemical reactions and pathways involving galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose. tmpzr1t_l9r_go_relaxed.owl galactitol metabolism biological_process owl:Class GO:0006059 biolink:NamedThing hexitol metabolic process The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexitol metabolism|sugar alcohol (hexitol) metabolism|sugar alcohol (hexitol) metabolic process biological_process owl:Class GO:0033006 biolink:NamedThing regulation of mast cell activation involved in immune response Any process that modulates the frequency, rate, or extent of mast cell activation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl regulation of mast cell activation during immune response biological_process owl:Class GO:1902888 biolink:NamedThing protein localization to astral microtubule A process in which a protein is transported to, or maintained in, a location within an astral microtubule. tmpzr1t_l9r_go_relaxed.owl protein localization in astral microtubule|protein localisation to astral microtubule|protein localisation in astral microtubule kmv 2014-04-05T21:26:34Z biological_process owl:Class GO:1902889 biolink:NamedThing protein localization to spindle microtubule A process in which a protein is transported to, or maintained in, a location within a spindle microtubule. tmpzr1t_l9r_go_relaxed.owl protein localization in spindle microtubule|protein localisation in spindle microtubule|protein localisation to spindle microtubule kmv 2014-04-05T21:31:39Z biological_process owl:Class GO:0097293 biolink:NamedThing XMP biosynthetic process The chemical reactions and pathways resulting in the formation of XMP, xanthosine monophosphate. tmpzr1t_l9r_go_relaxed.owl XMP formation|XMP biosynthesis|XMP anabolism|XMP synthesis pr 2012-04-26T09:54:13Z biological_process owl:Class GO:0097292 biolink:NamedThing XMP metabolic process The chemical reactions and pathways involving XMP, xanthosine monophosphate. tmpzr1t_l9r_go_relaxed.owl XMP metabolism pr 2012-04-26T09:51:16Z biological_process owl:Class GO:0035129 biolink:NamedThing post-embryonic hindlimb morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the hindlimb are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035127 biolink:NamedThing post-embryonic limb morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the limb are generated and organized. A limb is an appendage of an animal used for locomotion or grasping. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102326 biolink:NamedThing 2-hydroxy-6-oxo-6-(2,3-dihydroxyphenyl)-hexa-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxo-6-(2,3-dihydroxyphenyl)-hexa-2,4-dienoate + H2O <=> 2,3-dihydroxybenzoate + 2-oxopent-4-enoate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13171 molecular_function owl:Class GO:0016823 biolink:NamedThing hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances Catalysis of the hydrolysis of any acid carbon-carbon bond in a ketonic substance, a substance containing a keto (C=O) group. tmpzr1t_l9r_go_relaxed.owl EC:3.7.1.- molecular_function owl:Class GO:0055131 biolink:NamedThing C3HC4-type RING finger domain binding Binding to a C3HC4-type zinc finger domain of a protein. The C3HC4-type zinc finger is a variant of RING finger, is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid. Many proteins containing a C3HC4-type RING finger play a key role in the ubiquitination pathway. tmpzr1t_l9r_go_relaxed.owl jid 2009-10-22T02:20:33Z molecular_function owl:Class GO:2001310 biolink:NamedThing gliotoxin biosynthetic process The chemical reactions and pathways resulting in the formation of the epipolythiodioxopiperazine gliotoxin, a poisonous substance produced by some species of fungi. tmpzr1t_l9r_go_relaxed.owl gliotoxin formation|gliotoxin anabolism|gliotoxin synthesis|gliotoxin biosynthesis pr 2012-03-15T03:42:18Z biological_process owl:Class GO:1902897 biolink:NamedThing regulation of postsynaptic density protein 95 clustering Any process that modulates the frequency, rate or extent of postsynaptic density protein 95 clustering. tmpzr1t_l9r_go_relaxed.owl regulation of PSD-95 clustering|regulation of post-synaptic density protein 95 clustering|regulation of Dlg4 clustering als 2014-04-09T14:52:08Z biological_process owl:Class GO:1905874 biolink:NamedThing regulation of postsynaptic density organization Any process that modulates the frequency, rate or extent of postsynaptic density organization. tmpzr1t_l9r_go_relaxed.owl regulation of post-synaptic density organization|regulation of post synaptic density organization|regulation of PSD organization|regulation of postsynaptic density organisation sl 2017-01-27T19:53:32Z biological_process owl:Class GO:1900979 biolink:NamedThing positive regulation of tatiopterin metabolic process Any process that activates or increases the frequency, rate or extent of tatiopterin metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of tatiopterin metabolism|up-regulation of tatiopterin metabolism|upregulation of tatiopterin metabolism|up-regulation of tatiopterin metabolic process|up regulation of tatiopterin metabolism|upregulation of tatiopterin metabolic process|activation of tatiopterin metabolic process|activation of tatiopterin metabolism|up regulation of tatiopterin metabolic process tt 2012-06-14T04:03:37Z biological_process owl:Class GO:0062013 biolink:NamedThing positive regulation of small molecule metabolic process Any process that activates or increases the frequency, rate or extent of a small molecule metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of small molecule metabolism dph 2018-03-19T14:25:10Z biological_process owl:Class GO:0090321 biolink:NamedThing positive regulation of chylomicron remnant clearance Any process that increases the rate, frequency or extent of chylomicron remnant clearance. Chylomicron clearance is the process in which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-30T10:20:26Z biological_process owl:Class GO:0008808 biolink:NamedThing cardiolipin synthase activity Catalysis of the reaction: phosphatidylglycerol + phosphatidylglycerol = diphosphatidylglycerol (cardiolipin) + glycerol. tmpzr1t_l9r_go_relaxed.owl diphosphatidylglycerol synthase activity|cardiolipin synthetase 2 activity|cardiolipin synthase 2 activity|cardiolipin synthetase activity RHEA:31451|MetaCyc:CARDIOLIPSYN-RXN GO:0043788 molecular_function owl:Class GO:0030572 biolink:NamedThing phosphatidyltransferase activity Catalysis of the reaction involving the transfer of a phosphatidate (otherwise known as diacylglycerol 3-phosphosphate) group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001117 biolink:NamedThing protein-DNA-RNA complex disassembly The disaggregation of a protein-DNA-RNA complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-03T04:04:07Z biological_process owl:Class GO:0001115 biolink:NamedThing protein-DNA-RNA complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA-RNA complex. tmpzr1t_l9r_go_relaxed.owl protein-DNA-RNA complex subunit organisation krc 2010-12-03T04:00:02Z biological_process owl:Class GO:0002735 biolink:NamedThing positive regulation of myeloid dendritic cell cytokine production Any process that activates or increases the frequency, rate, or extent of myeloid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl up regulation of myeloid dendritic cell cytokine production|stimulation of myeloid dendritic cell cytokine production|activation of myeloid dendritic cell cytokine production|upregulation of myeloid dendritic cell cytokine production|up-regulation of myeloid dendritic cell cytokine production biological_process owl:Class GO:0009163 biolink:NamedThing nucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl nucleoside formation|nucleoside anabolism|nucleoside synthesis|nucleoside biosynthesis biological_process owl:Class GO:0034404 biolink:NamedThing nucleobase-containing small molecule biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside and nucleotide formation|nucleobase, nucleoside and nucleotide anabolism|nucleobase, nucleoside and nucleotide biosynthesis|nucleobase, nucleoside and nucleotide synthesis biological_process owl:Class GO:0010936 biolink:NamedThing negative regulation of macrophage cytokine production Any process that decreases the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002719 biolink:NamedThing negative regulation of cytokine production involved in immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine production contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytokine biosynthetic process involved in immune response|negative regulation of cytokine secretion involved in immune response|downregulation of cytokine production during immune response|down regulation of cytokine production during immune response|down-regulation of cytokine production during immune response|inhibition of cytokine production during immune response|negative regulation of cytokine production during immune response GO:0002740|GO:0002743 biological_process owl:Class GO:2000628 biolink:NamedThing regulation of miRNA metabolic process Any process that modulates the frequency, rate or extent of miRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of microRNA metabolic process dph 2011-04-18T03:47:54Z biological_process owl:Class GO:0051252 biolink:NamedThing regulation of RNA metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. tmpzr1t_l9r_go_relaxed.owl regulation of RNA metabolism biological_process owl:Class GO:1990432 biolink:NamedThing siRNA 3'-end processing The process of forming the mature 3' end of a siRNA molecule. tmpzr1t_l9r_go_relaxed.owl small interfering RNA 3'-end processing|siRNA 3' end processing jl 2014-07-29T15:38:38Z biological_process owl:Class GO:0043628 biolink:NamedThing ncRNA 3'-end processing Any process involved in forming the mature 3' end of a non-coding RNA molecule. tmpzr1t_l9r_go_relaxed.owl ncRNA 3' end processing biological_process owl:Class GO:0047738 biolink:NamedThing cellobiose phosphorylase activity Catalysis of the reaction: cellobiose + phosphate = alpha-D-glucose 1-phosphate + D-glucose. tmpzr1t_l9r_go_relaxed.owl cellobiose:phosphate alpha-D-glucosyltransferase activity EC:2.4.1.20|MetaCyc:CELLOBIOSE-PHOSPHORYLASE-RXN|RHEA:19493 molecular_function owl:Class GO:0004645 biolink:NamedThing 1,4-alpha-oligoglucan phosphorylase activity Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase. tmpzr1t_l9r_go_relaxed.owl polyphosphorylase activity|potato phosphorylase|amylopectin phosphorylase|1,4-alpha-glucan phosphorylase activity|1,4-alpha-D-glucan:phosphate alpha-D-glucosyltransferase activity|alpha-glucan phosphorylase|glucosan phosphorylase|muscle phosphorylase a and b activity|amylophosphorylase activity|muscle phosphorylase|granulose phosphorylase|starch phosphorylase|myophosphorylase|glucan phosphorylase MetaCyc:RXN-1826|EC:2.4.1.1 molecular_function owl:Class GO:1905637 biolink:NamedThing regulation of mitochondrial mRNA catabolic process Any process that modulates the frequency, rate or extent of mitochondrial mRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-03T20:23:57Z biological_process owl:Class GO:0140326 biolink:NamedThing ATPase-coupled intramembrane lipid transporter activity Catalysis of the movement of lipids from one membrane leaflet to the other, driven by ATP hydrolysis. This includes flippases and floppases. tmpzr1t_l9r_go_relaxed.owl aminophospholipid-transporting ATPase|phospholipid flippase activity|phospholipid-transporting ATPase activity|phospholipid translocating ATPase activity|phospholipid-translocating ATPase activity|ATPase-coupled phospholipid transporter activity|ATPase-dependent phospholipid transporter activity https://github.com/geneontology/go-ontology/issues/17648|https://github.com/geneontology/go-ontology/issues/21612 EC:7.6.2.1|Reactome:R-HSA-939763|MetaCyc:3.6.3.1-RXN|Reactome:R-HSA-947591 pg 2019-04-29T12:42:26Z GO:0004012|GO:0008557 molecular_function owl:Class GO:0140303 biolink:NamedThing intramembrane lipid transporter activity Enables the transport of a lipid from a region of a membrane to a different region on the same membrane. tmpzr1t_l9r_go_relaxed.owl flippase activity|translocase activity https://github.com/geneontology/go-ontology/issues/17648|https://github.com/geneontology/go-ontology/issues/19477 pg 2019-03-01T20:14:09Z molecular_function owl:Class GO:0050072 biolink:NamedThing m7G(5')pppN diphosphatase activity Catalysis of the reaction: 7-methylguanosine 5'-triphospho-5'-polynucleotide + H2O = 7-methylguanosine 5'-phosphate + polynucleotide. tmpzr1t_l9r_go_relaxed.owl 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|decapase activity|M(7)G(5')pppN pyrophosphatase activity|m7G(5')pppN pyrophosphatase activity EC:3.6.1.30|MetaCyc:M7G5PPPN-PYROPHOSPHATASE-RXN molecular_function owl:Class GO:0016462 biolink:NamedThing pyrophosphatase activity Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6810472 molecular_function owl:Class GO:0018516 biolink:NamedThing 2,4-dichlorobenzoyl-CoA reductase activity Catalysis of the reaction: 4-chlorobenzoyl-CoA + chloride + NADP(+) = 2,4-dichlorobenzoyl-CoA + NADPH. tmpzr1t_l9r_go_relaxed.owl 4-chlorobenzoyl-CoA:NADP+ oxidoreductase (halogenating) RHEA:23076|EC:1.21.1.2|MetaCyc:1.3.1.63-RXN|UM-BBD_reactionID:r0138|KEGG_REACTION:R05276 molecular_function owl:Class GO:0016628 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9661726|EC:1.3.1.-|Reactome:R-HSA-9661745|Reactome:R-HSA-4419979|Reactome:R-HSA-4755572 molecular_function owl:Class GO:0051969 biolink:NamedThing regulation of transmission of nerve impulse Any process that modulates the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation. tmpzr1t_l9r_go_relaxed.owl regulation of conduction of nerve impulse biological_process owl:Class GO:0023051 biolink:NamedThing regulation of signaling Any process that modulates the frequency, rate or extent of a signaling process. tmpzr1t_l9r_go_relaxed.owl regulation of signaling process|regulation of signalling process 2010-02-16T09:30:50Z biological_process owl:Class GO:0032818 biolink:NamedThing negative regulation of natural killer cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of natural killer cell proliferation|negative regulation of NK cell proliferation|downregulation of natural killer cell proliferation|down regulation of natural killer cell proliferation|inhibition of natural killer cell proliferation biological_process owl:Class GO:1901891 biolink:NamedThing regulation of cell septum assembly Any process that modulates the frequency, rate or extent of cell septum assembly. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-06T20:14:40Z biological_process owl:Class GO:0032954 biolink:NamedThing regulation of cytokinetic process Any process that modulates the frequency, rate or extent of a cytokinetic process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048656 biolink:NamedThing anther wall tapetum formation The process that gives rise to the anther wall tapetum. This process pertains to the initial formation of a structure from unspecified parts. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. tmpzr1t_l9r_go_relaxed.owl tapetum formation|tapetal layer formation biological_process owl:Class GO:0048646 biolink:NamedThing anatomical structure formation involved in morphogenesis The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl formation of an anatomical structure involved in morphogenesis Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. biological_process owl:Class GO:0046155 biolink:NamedThing rhodopsin catabolic process The chemical reactions and pathways resulting in the breakdown of rhodopsin, a brilliant purplish-red, light-sensitive visual pigment found in the rod cells of the retinas. tmpzr1t_l9r_go_relaxed.owl rhodopsin degradation|rhodopsin breakdown|rhodopsin catabolism biological_process owl:Class GO:0046154 biolink:NamedThing rhodopsin metabolic process The chemical reactions and pathways involving rhodopsin, a brilliant purplish-red, light-sensitive visual pigment found in the rod cells of the retinas. tmpzr1t_l9r_go_relaxed.owl rhodopsin metabolism biological_process owl:Class GO:0047253 biolink:NamedThing alpha-1,6-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: N-acetyl-beta-D-glucosaminyl-1,6-beta-D-(N-acetyl-B-glucosaminyl-1,2)-beta-D-mannosyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,6-beta-D-(N-acetyl-D-glucosaminyl-1,2-beta)-(N-acetyl-D-glucosaminyl-1,4-beta)-D-mannosyl-R + UDP. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosaminyltransferase VI activity|UDP-N-acetyl-D-glucosamine:2,6-bis(N-acetyl-beta-D-glucosaminyl)-alpha-D-mannosyl-glycoprotein 4-beta-N-acetyl-D-glucosaminyltransferase activity|mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyl-transferase activity|alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity|mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase activity|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase VI activity|uridine diphosphoacetylglucosamine-glycopeptide beta-1->4-acetylglucosaminyltransferase VI|uridine diphosphoacetylglucosamine-glycopeptide beta-1->4-acetylglucosaminyltransferase VI activity MetaCyc:2.4.1.201-RXN|RHEA:19945|EC:2.4.1.201 molecular_function owl:Class GO:0140103 biolink:NamedThing catalytic activity, acting on a glycoprotein Catalysis of a biochemical reaction at physiological temperatures in which one of the substrates is a glycoprotein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225 pg 2017-09-15T19:27:54Z molecular_function owl:Class GO:1900246 biolink:NamedThing positive regulation of RIG-I signaling pathway Any process that activates or increases the frequency, rate or extent of RIG-I signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of RIG-I signaling pathway|up regulation of DDX58 signaling pathway|positive regulation of DDX58 signaling pathway|positive regulation of RIG-I signalling pathway|activation of DDX58 signaling pathway|activation of RIG-I signaling pathway|activation of retinoic acid inducible gene I signaling pathway|up-regulation of RIG-I signaling pathway|up regulation of retinoic acid inducible gene I signaling pathway|up-regulation of retinoic acid inducible gene I signaling pathway|upregulation of retinoic acid inducible gene I signaling pathway|positive regulation of retinoic acid inducible gene I signaling pathway|upregulation of DDX58 signaling pathway|upregulation of RIG-I signaling pathway|up-regulation of DDX58 signaling pathway ss 2012-04-02T11:00:28Z biological_process owl:Class GO:0002833 biolink:NamedThing positive regulation of response to biotic stimulus Any process that activates or increases the frequency, rate, or extent of a response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl upregulation of response to biotic stimulus|up-regulation of response to biotic stimulus|stimulation of response to biotic stimulus|up regulation of response to biotic stimulus|activation of response to biotic stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0021761 biolink:NamedThing limbic system development The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048731 biolink:NamedThing system development The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046681 biolink:NamedThing response to carbamate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbamate stimulus. Carbamates are a group of insecticides and parasiticides that act by inhibiting cholinesterase. tmpzr1t_l9r_go_relaxed.owl carbamate resistance|carbamate susceptibility/resistance biological_process owl:Class GO:0017085 biolink:NamedThing response to insecticide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insecticide stimulus. Insecticides are chemicals used to kill insects. tmpzr1t_l9r_go_relaxed.owl insecticide resistance|insecticide susceptibility/resistance biological_process owl:Class GO:1901520 biolink:NamedThing aspyridone B catabolic process The chemical reactions and pathways resulting in the breakdown of aspyridone B. tmpzr1t_l9r_go_relaxed.owl aspyridone B degradation|aspyridone B catabolism|aspyridone B breakdown di 2012-10-18T18:31:44Z biological_process owl:Class GO:0030640 biolink:NamedThing polyketide catabolic process The chemical reactions and pathways resulting in the breakdown of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones, which are themselves formed by repetitive head-to-tail addition of acetyl (or substituted acetyl) units indirectly derived from acetate (or a substituted acetate) by a mechanism similar to that for fatty acid biosynthesis but without the intermediate reductive steps. tmpzr1t_l9r_go_relaxed.owl polyketide breakdown|polyketide degradation|polyketide catabolism biological_process owl:Class GO:1901023 biolink:NamedThing 4-hydroxyphenylacetate catabolic process The chemical reactions and pathways resulting in the breakdown of 4-hydroxyphenylacetate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetate breakdown|4-hydroxyphenylacetate catabolism|4-hydroxyphenylacetate degradation yaf 2012-06-18T02:31:58Z biological_process owl:Class GO:0070922 biolink:NamedThing small RNA loading onto RISC The process in which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of gene silencing by small RNA. tmpzr1t_l9r_go_relaxed.owl RISC assembly|gene silencing by RNA, small RNA loading onto RISC mah 2009-09-11T03:57:38Z biological_process owl:Class GO:0019969 biolink:NamedThing interleukin-10 binding Binding to interleukin-10. tmpzr1t_l9r_go_relaxed.owl IL-10 binding molecular_function owl:Class GO:0019838 biolink:NamedThing growth factor binding Binding to a growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRK receptor activity molecular_function owl:Class GO:0018870 biolink:NamedThing anaerobic 2-aminobenzoate metabolic process The chemical reactions and pathways resulting in the breakdown of 2-aminobenzoate, a derivative of benzoic acid with an NH2 group attached to C2, that occurs in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic 2-aminobenzoate metabolism UM-BBD_pathwayID:abz biological_process owl:Class GO:0043420 biolink:NamedThing anthranilate metabolic process The chemical reactions and pathways involving anthranilate (2-aminobenzoate). tmpzr1t_l9r_go_relaxed.owl ortho-aminobenzoic acid metabolic process|2-aminobenzoate metabolic process|ortho-aminobenzoic acid metabolism|anthranilic acid metabolic process|anthranilic acid metabolism|2-aminobenzoate metabolism|anthranilate metabolism UM-BBD_pathwayID:abz2 GO:0018869 biological_process owl:Class GO:0045938 biolink:NamedThing positive regulation of circadian sleep/wake cycle, sleep Any process that activates or increases the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals. tmpzr1t_l9r_go_relaxed.owl up-regulation of circadian sleep/wake cycle, sleep|activation of circadian sleep/wake cycle, sleep|up regulation of circadian sleep/wake cycle, sleep|upregulation of circadian sleep/wake cycle, sleep|positive regulation of sleep|stimulation of circadian sleep/wake cycle, sleep biological_process owl:Class GO:0045187 biolink:NamedThing regulation of circadian sleep/wake cycle, sleep Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals. tmpzr1t_l9r_go_relaxed.owl regulation of sleep biological_process owl:Class GO:1901054 biolink:NamedThing sarcosine biosynthetic process The chemical reactions and pathways resulting in the formation of sarcosine. tmpzr1t_l9r_go_relaxed.owl sarcosine biosynthesis|sarcosine formation|sarcosine anabolism|sarcosine synthesis yaf 2012-06-28T04:52:37Z biological_process owl:Class GO:0042398 biolink:NamedThing cellular modified amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl cellular amino acid derivative anabolism|cellular modified amino acid synthesis|cellular modified amino acid biosynthesis|cellular amino acid derivative synthesis|cellular amino acid derivative biosynthesis|amino acid derivative biosynthetic process|cellular amino acid derivative biosynthetic process|cellular amino acid derivative formation|cellular modified amino acid anabolism|cellular modified amino acid formation biological_process owl:Class GO:0099015 biolink:NamedThing degradation of host chromosome by virus The catabolic breakdown of the DNA of a host chromosome by a virus. This occurs during infection of bacteria by some phages. It frees up a large pool of nucleoside 5'-triphophates for use in viral DNA synthesis. tmpzr1t_l9r_go_relaxed.owl VZ:3947 biological_process owl:Class GO:0039637 biolink:NamedThing catabolism by virus of host DNA The breakdown of host DNA, deoxyribonucleic acid, by a virus. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-10T15:59:22Z biological_process owl:Class GO:0045978 biolink:NamedThing negative regulation of nucleoside metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleosides. tmpzr1t_l9r_go_relaxed.owl down regulation of nucleoside metabolic process|downregulation of nucleoside metabolic process|negative regulation of nucleoside metabolism|inhibition of nucleoside metabolic process|down-regulation of nucleoside metabolic process biological_process owl:Class GO:0045934 biolink:NamedThing negative regulation of nucleobase-containing compound metabolic process Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl down-regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism|downregulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|inhibition of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|down regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process biological_process owl:Class GO:1904840 biolink:NamedThing positive regulation of male germ-line stem cell asymmetric division Any process that activates or increases the frequency, rate or extent of male germ-line stem cell asymmetric division. tmpzr1t_l9r_go_relaxed.owl positive regulation of male germ-line stem cell renewal|up regulation of male germ-line stem cell asymmetric division|activation of male germ-line stem cell asymmetric division|activation of male germ-line stem cell renewal|up-regulation of male germ-line stem cell asymmetric division|up regulation of male germ-line stem cell renewal|up-regulation of male germ-line stem cell renewal|upregulation of male germ-line stem cell asymmetric division|upregulation of male germ-line stem cell renewal sl 2015-12-05T00:28:46Z biological_process owl:Class GO:2000243 biolink:NamedThing positive regulation of reproductive process Any process that activates or increases the frequency, rate or extent of reproductive process. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-10T02:44:08Z biological_process owl:Class GO:0019622 biolink:NamedThing 3-(3-hydroxy)phenylpropionate catabolic process The chemical reactions and pathways resulting in the breakdown of 3-(3-hydroxy)phenylpropionate, a hydroxylated derivative of phenylpropionate. tmpzr1t_l9r_go_relaxed.owl 3-(3-hydroxy)phenylpropionate degradation|3-(3-hydroxy)phenylpropionate catabolism|3-(3-hydroxy)phenylpropionate breakdown MetaCyc:HCAMHPDEG-PWY biological_process owl:Class GO:0046435 biolink:NamedThing 3-(3-hydroxy)phenylpropionate metabolic process The chemical reactions and pathways involving 3-(3-hydroxy)phenylpropionate, a hydroxylated derivative of phenylpropionate. tmpzr1t_l9r_go_relaxed.owl 3-(3-hydroxy)phenylpropionate metabolism biological_process owl:Class GO:0046752 biolink:NamedThing viral capsid precursor transport to host cell nucleus Any process in which viral capsid precursors are transported to a specific location in the nucleus, thus accumulating the necessary components for assembly of a capsid. tmpzr1t_l9r_go_relaxed.owl viral capsid precursor localization in host cell nucleus|localization of viral capsid precursors in nucleus|establishment and maintenance of viral capsid precursor localization in nucleus|viral capsid precursor localisation in host cell nucleus|viral capsid precursor localization to host cell nucleus|nuclear localization of viral capsid precursors biological_process owl:Class GO:0030581 biolink:NamedThing symbiont intracellular protein transport in host The directed movement of a symbiont's proteins within a cell of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl intracellular protein transport in host|intracellular protein transport in other organism involved in symbiotic interaction|intracellular protein transport in other organism during symbiotic interaction|host cell protein transport GO:0051708 biological_process owl:Class GO:0061223 biolink:NamedThing mesonephric mesenchymal cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T01:21:48Z biological_process owl:Class GO:0061208 biolink:NamedThing cell differentiation involved in mesonephros development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:21:23Z biological_process owl:Class GO:0009131 biolink:NamedThing pyrimidine nucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside monophosphate breakdown|pyrimidine nucleoside monophosphate catabolism|pyrimidine nucleoside monophosphate degradation biological_process owl:Class GO:0009125 biolink:NamedThing nucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside monophosphate breakdown|nucleoside monophosphate catabolism|nucleoside monophosphate degradation biological_process owl:Class GO:0021965 biolink:NamedThing spinal cord ventral commissure morphogenesis The process in which the anatomical structures of the spinal cord ventral commissure are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021952 biolink:NamedThing central nervous system projection neuron axonogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region. tmpzr1t_l9r_go_relaxed.owl central nervous system axon tract development biological_process owl:Class GO:0033209 biolink:NamedThing tumor necrosis factor-mediated signaling pathway A series of molecular signals initiated by the binding of a tumor necrosis factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl adipocytokine signaling pathway|TNF-alpha-mediated signaling pathway|tumor necrosis factor-mediated signalling pathway|tumor necrosis factor alpha-mediated signaling pathway biological_process owl:Class GO:0019221 biolink:NamedThing cytokine-mediated signaling pathway A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl cytokine and chemokine mediated signaling pathway|cytokine mediated signalling pathway biological_process owl:Class GO:1990858 biolink:NamedThing cellular response to lectin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lectin stimulus. A lectin is a carbohydrate-binding protein, highly specific for binding sugar moieties. tmpzr1t_l9r_go_relaxed.owl This term refers to endogenous (evolved) responses to lectins (endogenous or exogenous), it does not cover the events that happen due to lectin toxicity. sl 2015-09-24T15:34:42Z biological_process owl:Class GO:1990840 biolink:NamedThing response to lectin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lectin stimulus. A lectin is a carbohydrate-binding protein, highly specific for binding sugar moieties. tmpzr1t_l9r_go_relaxed.owl This term refers to endogenous (evolved) responses to lectins (endogenous or exogenous), it does not cover the events that happen due to lectin toxicity. sl 2015-08-27T20:02:21Z biological_process owl:Class GO:1990072 biolink:NamedThing TRAPPIII protein complex A complex that functions in anterograde transport at the Golgi and also regulates autophagy. In yeast it includes at least the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33, Trs85. TRAPPIII may include further, as yet undescribed, proteins. tmpzr1t_l9r_go_relaxed.owl bhm 2013-03-28T14:28:59Z cellular_component owl:Class GO:0030008 biolink:NamedThing TRAPP complex A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. tmpzr1t_l9r_go_relaxed.owl transport protein particle|TRAPP1|transport protein particle complex|TRAPP2 Wikipedia:TRAPP_complex cellular_component owl:Class GO:1990362 biolink:NamedThing butanol dehydrogenase activity Catalysis of the reaction: butanal + NADH + H+ => n-butanol + NAD+. tmpzr1t_l9r_go_relaxed.owl RHEA:33199 tt 2014-04-23T21:14:09Z molecular_function owl:Class GO:0004022 biolink:NamedThing alcohol dehydrogenase (NAD+) activity Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl aldo-keto reductase (NAD) activity|primary alcohol dehydrogenase|alcohol dehydrogenase activity|NADH-alcohol dehydrogenase|NAD-specific aromatic alcohol dehydrogenase|NADH-aldehyde dehydrogenase|yeast alcohol dehydrogenase|alcohol:NAD+ oxidoreductase|aldehyde dehydrogenase (NAD) activity|NAD-dependent alcohol dehydrogenase|aliphatic alcohol dehydrogenase|ethanol dehydrogenase|ADH UM-BBD_enzymeID:e0023|RHEA:10740|Reactome:R-HSA-2162078|MetaCyc:ALCOHOL-DEHYDROG-GENERIC-RXN|EC:1.1.1.1 molecular_function owl:Class GO:0002584 biolink:NamedThing negative regulation of antigen processing and presentation of peptide antigen Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of peptide antigen. tmpzr1t_l9r_go_relaxed.owl down regulation of antigen processing and presentation of peptide antigen|down-regulation of antigen processing and presentation of peptide antigen|negative regulation of peptide antigen processing and presentation|inhibition of antigen processing and presentation of peptide antigen|downregulation of antigen processing and presentation of peptide antigen biological_process owl:Class GO:0007041 biolink:NamedThing lysosomal transport The directed movement of substances into, out of or within a lysosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007034 biolink:NamedThing vacuolar transport The directed movement of substances into, out of or within a vacuole. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901641 biolink:NamedThing ITP binding Binding to ITP. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-15T22:56:39Z molecular_function owl:Class GO:0032555 biolink:NamedThing purine ribonucleotide binding Binding to a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010899 biolink:NamedThing regulation of phosphatidylcholine catabolic process Any process that modulates the rate, frequency or extent of phosphatidylcholine catabolism. Phosphatidylcholine catabolic processes are the chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150172 biolink:NamedThing regulation of phosphatidylcholine metabolic process Any process that modulates the frequency, rate or extent of phosphatidylcholine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:03:11Z biological_process owl:Class GO:0032395 biolink:NamedThing MHC class II receptor activity Combining with an MHC class II protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl T cell receptor activity|alpha-beta T cell receptor activity|gamma-delta T cell receptor activity Note that this term is intended for annotation of gene products that act as receptors for MHC class II protein complexes, not for components of the MHC class II protein complexes themselves. molecular_function owl:Class GO:0150065 biolink:NamedThing regulation of deacetylase activity Any process that modulates the frequency, rate or extent of deacetylase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-23T12:24:28Z biological_process owl:Class GO:0051336 biolink:NamedThing regulation of hydrolase activity Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. tmpzr1t_l9r_go_relaxed.owl hydrolase regulator biological_process owl:Class GO:1903967 biolink:NamedThing response to micafungin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a micafungin stimulus. tmpzr1t_l9r_go_relaxed.owl al 2015-02-27T09:57:38Z biological_process owl:Class GO:1901652 biolink:NamedThing response to peptide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-20T09:45:15Z biological_process owl:Class GO:2000802 biolink:NamedThing positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation Any process that activates or increases the frequency, rate or extent of endocardial cushion to mesenchymal transition involved in heart valve formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of endocardial cushion to mesenchymal transition involved in valve formation bf 2011-07-01T12:31:25Z biological_process owl:Class GO:0140051 biolink:NamedThing positive regulation of endocardial cushion to mesenchymal transition Any process that activates or increases the frequency, rate or extent of endocardial cushion to mesenchymal transition. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-26T09:11:03Z biological_process owl:Class GO:0071323 biolink:NamedThing cellular response to chitin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:25:54Z biological_process owl:Class GO:0071417 biolink:NamedThing cellular response to organonitrogen compound Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond. tmpzr1t_l9r_go_relaxed.owl cellular response to organic nitrogen mah 2009-12-14T04:07:27Z biological_process owl:Class GO:0052696 biolink:NamedThing flavonoid glucuronidation The modification of a flavonoid by the conjugation of glucuronic acid. The resultant flavonoid glucuronosides are often much more water-soluble than the precursor. tmpzr1t_l9r_go_relaxed.owl flavonoid glucuronide biosynthetic process|flavonoid glucuronoside biosynthetic process|flavonoid glucuronide biosynthesis|flavonoid glucuronoside biosynthesis ai 2011-07-27T05:37:44Z biological_process owl:Class GO:0009812 biolink:NamedThing flavonoid metabolic process The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins. tmpzr1t_l9r_go_relaxed.owl flavonoid metabolism biological_process owl:Class GO:1905938 biolink:NamedThing positive regulation of germ cell proliferation Any process that activates or increases the frequency, rate or extent of germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl activation of germ cell proliferation|up regulation of germ cell proliferation|up-regulation of germ cell proliferation|upregulation of germ cell proliferation hbye 2017-02-09T14:51:51Z biological_process owl:Class GO:1905936 biolink:NamedThing regulation of germ cell proliferation Any process that modulates the frequency, rate or extent of germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl hbye 2017-02-09T14:51:31Z biological_process owl:Class GO:0050586 biolink:NamedThing 3-hydroxy-2-methylquinolin-4-one 2,4-dioxygenase activity Catalysis of the reaction: 3-hydroxy-2-methylquinolin-4(1H)-one + H(+) + O(2) = N-acetylanthranilate + CO. tmpzr1t_l9r_go_relaxed.owl 1H-3-hydroxy-4-oxo quinaldine 2,4-dioxygenase activity|3-hydroxy-2-methyl-1H-quinolin-4-one 2,4-dioxygenase (CO-forming)|3-hydroxy-2-methyl-quinolin-4-one 2,4-dioxygenase activity|(1H)-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase activity|1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase activity EC:1.13.11.48|RHEA:21572|MetaCyc:1.13.11.48-RXN|KEGG_REACTION:R05720 molecular_function owl:Class GO:0016702 biolink:NamedThing oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161917|Reactome:R-HSA-9018880|Reactome:R-HSA-5164399|Reactome:R-HSA-9026408|Reactome:R-HSA-2161907|Reactome:R-HSA-9020274|Reactome:R-HSA-9026918|EC:1.13.11.-|Reactome:R-HSA-2161775 molecular_function owl:Class GO:0070094 biolink:NamedThing positive regulation of glucagon secretion Any process that activates or increases the frequency, rate or extent of the regulated release of glucagon. tmpzr1t_l9r_go_relaxed.owl stimulation of glucagon secretion|up-regulation of glucagon secretion|upregulation of glucagon secretion|activation of glucagon secretion|up regulation of glucagon secretion biological_process owl:Class GO:0008701 biolink:NamedThing 4-hydroxy-2-oxovalerate aldolase activity Catalysis of the reaction: 4-hydroxy-2-oxopentanoate = acetaldehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-2-oxopentanoate pyruvate-lyase activity|DmpG|4-hydroxy-2-oxopentanoate pyruvate-lyase (acetaldehyde-forming) activity|4-hydroxy-2-ketovalerate aldolase activity|4-hydroxy-2-oxovalerate pyruvate-lyase activity|HOA UM-BBD_enzymeID:e0077|KEGG_REACTION:R00750|MetaCyc:MHPELY-RXN|RHEA:22624|EC:4.1.3.39 GO:0018804 molecular_function owl:Class GO:0016833 biolink:NamedThing oxo-acid-lyase activity Catalysis of the cleavage of a C-C bond by other means than by hydrolysis or oxidation, of a 3-hydroxy acid. tmpzr1t_l9r_go_relaxed.owl oxoacid lyase activity|oxo-acid lyase activity EC:4.1.3.- molecular_function owl:Class GO:0050303 biolink:NamedThing lysine 6-dehydrogenase activity Catalysis of the reaction: H2O + NAD+ + L-lysine = NH3 + NADH + allysine. tmpzr1t_l9r_go_relaxed.owl L-lysine:NAD+ 6-oxidoreductase (deaminating)|LysDH activity|L-lysine 6-dehydrogenase activity|L-lysine epsilon-dehydrogenase activity MetaCyc:LYSINE-6-DEHYDROGENASE-RXN|EC:1.4.1.18|RHEA:12408|MetaCyc:PWY-5314 molecular_function owl:Class GO:0016639 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.4.1.- molecular_function owl:Class GO:0043318 biolink:NamedThing negative regulation of cytotoxic T cell degranulation Any process that stops, prevents, or reduces the rate of cytotoxic T cell degranulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytotoxic T-cell granule exocytosis|negative regulation of cytotoxic T-lymphocyte granule exocytosis|down-regulation of cytotoxic T cell degranulation|negative regulation of cytotoxic T cell granule exocytosis|negative regulation of cytotoxic T lymphocyte degranulation|negative regulation of cytotoxic T-cell degranulation|negative regulation of cytotoxic T lymphocyte granule exocytosis|down regulation of cytotoxic T cell degranulation|negative regulation of cytotoxic T-lymphocyte degranulation|inhibition of cytotoxic T cell degranulation|downregulation of cytotoxic T cell degranulation biological_process owl:Class GO:0043317 biolink:NamedThing regulation of cytotoxic T cell degranulation Any process that modulates the frequency, rate, or extent of cytotoxic T cell degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of cytotoxic T lymphocyte degranulation|regulation of cytotoxic T-lymphocyte granule exocytosis|regulation of cytotoxic T-cell granule exocytosis|regulation of cytotoxic T-cell degranulation|regulation of cytotoxic T-lymphocyte degranulation|regulation of cytotoxic T cell granule exocytosis|regulation of cytotoxic T lymphocyte granule exocytosis biological_process owl:Class GO:0071783 biolink:NamedThing endoplasmic reticulum cisternal network organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) cisternal network. The ER cisternal network is the ER part that comprises the membranes with low curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl ER cisternal network organization|ER cisternal network organisation|endoplasmic reticulum cisternal network organisation mah 2010-09-01T01:47:28Z biological_process owl:Class GO:0007029 biolink:NamedThing endoplasmic reticulum organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum organization and biogenesis|endoplasmic reticulum morphology|ER organisation|endoplasmic reticulum organisation|ER organization and biogenesis biological_process owl:Class GO:2000083 biolink:NamedThing negative regulation of L-ascorbic acid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of L-ascorbic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of ascorbate biosynthetic process|negative regulation of vitamin C biosynthetic process|negative regulation of L-ascorbic acid biosynthesis|negative regulation of L-ascorbic acid anabolism|negative regulation of ascorbate biosynthesis|negative regulation of L-ascorbic acid synthesis|negative regulation of L-ascorbic acid formation|negative regulation of vitamin C biosynthesis tb 2010-08-27T11:26:19Z biological_process owl:Class GO:0045912 biolink:NamedThing negative regulation of carbohydrate metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving carbohydrate. tmpzr1t_l9r_go_relaxed.owl down-regulation of carbohydrate metabolic process|downregulation of carbohydrate metabolic process|inhibition of carbohydrate metabolic process|negative regulation of carbohydrate metabolism|down regulation of carbohydrate metabolic process biological_process owl:Class GO:0002458 biolink:NamedThing peripheral T cell tolerance induction Tolerance induction of T cells in the periphery, in this case, any location in the body other than the thymus. tmpzr1t_l9r_go_relaxed.owl peripheral T-cell tolerance induction|peripheral T-lymphocyte tolerance induction|peripheral T lymphocyte tolerance induction biological_process owl:Class GO:0002517 biolink:NamedThing T cell tolerance induction A process involving any mechanism for tolerance induction in T cells. tmpzr1t_l9r_go_relaxed.owl T-cell tolerance induction|T-lymphocyte tolerance induction|T lymphocyte tolerance induction biological_process owl:Class GO:2000177 biolink:NamedThing regulation of neural precursor cell proliferation Any process that modulates the frequency, rate or extent of neural precursor cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T12:40:41Z biological_process owl:Class GO:1904712 biolink:NamedThing positive regulation of Wnt-Frizzled-LRP5/6 complex assembly Any process that activates or increases the frequency, rate or extent of Wnt-Frizzled-LRP5/6 complex assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of WNT-FZD-LRP6 complex formation|up regulation of Frizzled-LRP5/6 complex assembly|positive regulation of WNT-FZD-LRP5 complex formation|upregulation of WNT-FZD-LRP6 complex assembly|activation of Wnt-induced Frizzled-LRP5/6 complex formation|up regulation of Wnt-FZD-LRP5/6 trimeric complex formation|up regulation of WNT-FZD-LRP5 complex assembly|up regulation of WNT-FZD-LRP6 complex formation|up-regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|upregulation of Wnt-induced Frizzled-LRP5/6 complex formation|positive regulation of WNT-FZD-LRP6 complex assembly|upregulation of Wnt-FZD-LRP5/6 trimeric complex assembly|positive regulation of Frizzled-LRP5/6 complex formation|up-regulation of WNT-FZD-LRP5 complex formation|activation of Frizzled-LRP5/6 complex formation|up-regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|activation of Wnt-FZD-LRP5/6 trimeric complex assembly|up regulation of WNT-FZD-LRP5 complex formation|activation of Wnt-induced Frizzled-LRP5/6 complex assembly|positive regulation of Frizzled-LRP5/6 complex assembly|up regulation of Frizzled-LRP5/6 complex formation|positive regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|positive regulation of WNT-FZD-LRP5 complex assembly|activation of WNT-FZD-LRP6 complex formation|upregulation of WNT-FZD-LRP5 complex assembly|activation of Wnt-FZD-LRP5/6 trimeric complex formation|positive regulation of WNT-FZD-LRP6 complex formation|up-regulation of Frizzled-LRP5/6 complex formation|up regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|up-regulation of Frizzled-LRP5/6 complex assembly|up-regulation of Wnt-induced Frizzled-LRP5/6 complex formation|positive regulation of Wnt-FZD-LRP5/6 trimeric complex formation|up-regulation of WNT-FZD-LRP6 complex formation|positive regulation of Wnt-induced Frizzled-LRP5/6 complex formation|up-regulation of WNT-FZD-LRP5 complex assembly|up regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|activation of WNT-FZD-LRP6 complex assembly|up regulation of WNT-FZD-LRP6 complex assembly|up-regulation of Wnt-FZD-LRP5/6 trimeric complex formation|upregulation of Frizzled-LRP5/6 complex formation|upregulation of Wnt-induced Frizzled-LRP5/6 complex assembly|up regulation of Wnt-induced Frizzled-LRP5/6 complex formation|activation of Frizzled-LRP5/6 complex assembly|up-regulation of WNT-FZD-LRP6 complex assembly|activation of WNT-FZD-LRP5 complex assembly|upregulation of WNT-FZD-LRP5 complex formation|upregulation of Frizzled-LRP5/6 complex assembly|activation of WNT-FZD-LRP5 complex formation|positive regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|upregulation of Wnt-FZD-LRP5/6 trimeric complex formation bf 2015-10-05T14:02:35Z biological_process owl:Class GO:1904441 biolink:NamedThing regulation of thyroid gland epithelial cell proliferation Any process that modulates the frequency, rate or extent of thyroid gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of thyroid follicular cell proliferation|regulation of Hurthle cell proliferation sl 2015-07-06T15:41:09Z biological_process owl:Class GO:0050678 biolink:NamedThing regulation of epithelial cell proliferation Any process that modulates the frequency, rate or extent of epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000131 biolink:NamedThing regulation of tyramine signaling pathway Any process that modulates the frequency, rate or extent of tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of tyramine signalling pathway mah 2010-09-29T09:31:56Z biological_process owl:Class GO:0050759 biolink:NamedThing positive regulation of thymidylate synthase biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase. tmpzr1t_l9r_go_relaxed.owl up regulation of thymidylate synthase biosynthetic process|positive regulation of thymidylate synthase formation|activation of thymidylate synthase biosynthetic process|positive regulation of thymidylate synthase biosynthesis|up-regulation of thymidylate synthase biosynthetic process|positive regulation of thymidylate synthase synthesis|stimulation of thymidylate synthase biosynthetic process|positive regulation of thymidylate synthase anabolism|upregulation of thymidylate synthase biosynthetic process biological_process owl:Class GO:0051247 biolink:NamedThing positive regulation of protein metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein. tmpzr1t_l9r_go_relaxed.owl activation of protein metabolic process|positive regulation of protein metabolism|up regulation of protein metabolic process|upregulation of protein metabolic process|up-regulation of protein metabolic process|stimulation of protein metabolic process biological_process owl:Class GO:1904278 biolink:NamedThing positive regulation of wax biosynthetic process Any process that activates or increases the frequency, rate or extent of wax biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of wax synthesis|positive regulation of wax anabolism|upregulation of wax synthesis|upregulation of wax biosynthesis|upregulation of wax biosynthetic process|activation of wax biosynthetic process|up-regulation of wax biosynthesis|activation of wax biosynthesis|upregulation of wax formation|up-regulation of wax formation|up regulation of wax formation|positive regulation of wax biosynthesis|activation of wax anabolism|up-regulation of wax anabolism|up regulation of wax biosynthetic process|positive regulation of wax synthesis|activation of wax formation|up-regulation of wax biosynthetic process|up regulation of wax anabolism|upregulation of wax anabolism|activation of wax synthesis|positive regulation of wax formation|up-regulation of wax synthesis|up regulation of wax biosynthesis tb 2015-06-03T17:20:19Z biological_process owl:Class GO:0009891 biolink:NamedThing positive regulation of biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. tmpzr1t_l9r_go_relaxed.owl positive regulation of formation|positive regulation of biosynthesis|up-regulation of biosynthetic process|upregulation of biosynthetic process|stimulation of biosynthetic process|positive regulation of synthesis|up regulation of biosynthetic process|activation of biosynthetic process|positive regulation of anabolism biological_process owl:Class GO:0010781 biolink:NamedThing meiotic DNA double-strand break formation involved in meiotic gene conversion The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process in which genetic information is transferred from one helix to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042138 biolink:NamedThing meiotic DNA double-strand break formation The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034356 biolink:NamedThing NAD biosynthesis via nicotinamide riboside salvage pathway The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD) from the vitamin precursor nicotinamide riboside. tmpzr1t_l9r_go_relaxed.owl NR salvage pathway|nicotinamide riboside salvage pathway biological_process owl:Class GO:0009435 biolink:NamedThing NAD biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl oxidized nicotinamide adenine dinucleotide biosynthetic process|nicotinamide adenine dinucleotide biosynthesis|NAD biosynthesis|NAD (oxidized) biosynthesis|reduced NAD biosynthetic process|NAD anabolism|NAD (reduced) biosynthetic process|NADH biosynthetic process|NAD formation|reduced nicotinamide adenine dinucleotide biosynthetic process|NADH biosynthesis|NAD synthesis|reduced nicotinamide adenine dinucleotide biosynthesis|NAD (oxidized) biosynthetic process|nicotinamide adenine dinucleotide biosynthetic process|oxidized nicotinamide adenine dinucleotide biosynthesis|oxidized NAD biosynthesis|NAD (reduced) biosynthesis|oxidized NAD biosynthetic process|reduced NAD biosynthesis GO:0006736 biological_process owl:Class GO:0046385 biolink:NamedThing deoxyribose phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. tmpzr1t_l9r_go_relaxed.owl deoxyribose phosphate anabolism|deoxyribose phosphate biosynthesis|deoxyribose phosphate synthesis|deoxyribose phosphate formation biological_process owl:Class GO:0019692 biolink:NamedThing deoxyribose phosphate metabolic process The chemical reactions and pathways involving deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. tmpzr1t_l9r_go_relaxed.owl deoxyribose phosphate metabolism biological_process owl:Class GO:0006021 biolink:NamedThing inositol biosynthetic process The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl inositol biosynthesis|inositol formation|inositol anabolism|myo-inositol biosynthesis|myo-inositol biosynthetic process|vitamin Bh biosynthetic process|inositol synthesis|vitamin Bh biosynthesis biological_process owl:Class GO:0006020 biolink:NamedThing inositol metabolic process The chemical reactions and pathways involving inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl myo-inositol metabolism|vitamin Bh metabolic process|vitamin Bh metabolism|inositol metabolism|myo-inositol metabolic process Wikipedia:Inositol biological_process owl:Class GO:0019639 biolink:NamedThing 6-hydroxycineole catabolic process The chemical reactions and pathways resulting in the breakdown of 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2. tmpzr1t_l9r_go_relaxed.owl 6-endo-hydroxycineole catabolic process|6-endo-hydroxycineole catabolism|hydroxycineol catabolism|6-hydroxycineole degradation|6-hydroxycineole catabolism|6-hydroxycineole breakdown|hydroxycineol catabolic process MetaCyc:6-HYDROXYCINEOLE-DEGRADATION-PWY biological_process owl:Class GO:1901502 biolink:NamedThing ether catabolic process The chemical reactions and pathways resulting in the breakdown of ether. tmpzr1t_l9r_go_relaxed.owl ether catabolism|ether degradation|ether breakdown pr 2012-10-17T09:42:43Z biological_process owl:Class GO:2001214 biolink:NamedThing positive regulation of vasculogenesis Any process that activates or increases the frequency, rate or extent of vasculogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of vascular morphogenesis yaf 2011-11-15T01:22:39Z biological_process owl:Class GO:2001212 biolink:NamedThing regulation of vasculogenesis Any process that modulates the frequency, rate or extent of vasculogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of vascular morphogenesis yaf 2011-11-15T01:22:31Z biological_process owl:Class GO:0018981 biolink:NamedThing triethanolamine metabolic process The chemical reactions and pathways involving triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent. tmpzr1t_l9r_go_relaxed.owl triethanolamine metabolism UM-BBD_pathwayID:tea biological_process owl:Class GO:0044107 biolink:NamedThing cellular alcohol metabolic process The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl jl 2009-07-15T01:36:19Z biological_process owl:Class GO:1900958 biolink:NamedThing positive regulation of 17-methylnonadec-1-ene biosynthetic process Any process that activates or increases the frequency, rate or extent of 17-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of 17-methylnonadec-1-ene anabolism|up-regulation of 17-methylnonadec-1-ene formation|positive regulation of 17-methylnonadec-1-ene biosynthesis|up-regulation of 17-methylnonadec-1-ene synthesis|up-regulation of 17-methylnonadec-1-ene biosynthesis|activation of 17-methylnonadec-1-ene biosynthesis|up regulation of 17-methylnonadec-1-ene synthesis|upregulation of 17-methylnonadec-1-ene formation|up regulation of 17-methylnonadec-1-ene anabolism|activation of 17-methylnonadec-1-ene formation|upregulation of 17-methylnonadec-1-ene synthesis|up regulation of 17-methylnonadec-1-ene biosynthetic process|up-regulation of 17-methylnonadec-1-ene biosynthetic process|activation of 17-methylnonadec-1-ene anabolism|positive regulation of 17-methylnonadec-1-ene anabolism|positive regulation of 17-methylnonadec-1-ene formation|upregulation of 17-methylnonadec-1-ene anabolism|positive regulation of 17-methylnonadec-1-ene synthesis|activation of 17-methylnonadec-1-ene synthesis|up regulation of 17-methylnonadec-1-ene formation|activation of 17-methylnonadec-1-ene biosynthetic process|upregulation of 17-methylnonadec-1-ene biosynthetic process|up regulation of 17-methylnonadec-1-ene biosynthesis|upregulation of 17-methylnonadec-1-ene biosynthesis tt 2012-06-14T03:27:46Z biological_process owl:Class GO:1900956 biolink:NamedThing regulation of 17-methylnonadec-1-ene biosynthetic process Any process that modulates the frequency, rate or extent of 17-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of 17-methylnonadec-1-ene formation|regulation of 17-methylnonadec-1-ene anabolism|regulation of 17-methylnonadec-1-ene synthesis|regulation of 17-methylnonadec-1-ene biosynthesis tt 2012-06-14T03:27:18Z biological_process owl:Class GO:0003322 biolink:NamedThing pancreatic A cell development The process whose specific outcome is the progression of a pancreatic A cell over time, from its formation to the mature structure. A pancreatic A cell is a cell in the pancreas that secretes glucagon. tmpzr1t_l9r_go_relaxed.owl pancreatic alpha cell development dph 2009-11-02T08:13:55Z biological_process owl:Class GO:0010334 biolink:NamedThing sesquiterpene synthase activity Catalysis of the reaction: trans,trans-farnesyl diphosphate = a sesquiterpene + diphosphate. Sesquiterpenes are terpenes containing three isoprene units, i.e. 15 carbons. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010333 biolink:NamedThing terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900019 biolink:NamedThing regulation of protein kinase C activity Any process that modulates the frequency, rate or extent of protein kinase C activity. tmpzr1t_l9r_go_relaxed.owl regulation of PKC activity|regulation of PKC bf 2012-01-11T03:50:47Z biological_process owl:Class GO:0046493 biolink:NamedThing lipid A metabolic process The chemical reactions and pathways involving lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common. tmpzr1t_l9r_go_relaxed.owl lipid A metabolism biological_process owl:Class GO:1901269 biolink:NamedThing lipooligosaccharide metabolic process The chemical reactions and pathways involving lipooligosaccharide. tmpzr1t_l9r_go_relaxed.owl lipooligosaccharide metabolism yaf 2012-08-17T14:31:26Z biological_process owl:Class GO:0001842 biolink:NamedThing neural fold formation The process in which the neural fold is formed. The edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove. tmpzr1t_l9r_go_relaxed.owl neural groove formation biological_process owl:Class GO:0060571 biolink:NamedThing morphogenesis of an epithelial fold The morphogenetic process in which an epithelial sheet bends along a linear axis. tmpzr1t_l9r_go_relaxed.owl folding of an epithelial sheet|epithelial folding dph 2009-04-30T09:27:17Z biological_process owl:Class GO:0006421 biolink:NamedThing asparaginyl-tRNA aminoacylation The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. The asparaginyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an asparagine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006418 biolink:NamedThing tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. tmpzr1t_l9r_go_relaxed.owl tRNA charging MetaCyc:TRNA-CHARGING-PWY biological_process owl:Class GO:1901463 biolink:NamedThing regulation of tetrapyrrole biosynthetic process Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of tetrapyrrole anabolism|regulation of tetrapyrrole biosynthesis|regulation of tetrapyrrole formation|regulation of tetrapyrrole synthesis tt 2012-10-02T14:34:14Z biological_process owl:Class GO:1902723 biolink:NamedThing negative regulation of skeletal muscle satellite cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of satellite cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of satellite cell proliferation|downregulation of satellite cell proliferation|down regulation of satellite cell proliferation|down-regulation of satellite cell proliferation mr 2014-02-24T16:09:46Z biological_process owl:Class GO:0014859 biolink:NamedThing negative regulation of skeletal muscle cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140491 biolink:NamedThing ubiquitin-like hydrolase activity An activity that cleaves ubiquitin or ubiquitin-like proteins (ULP) from target proteins. tmpzr1t_l9r_go_relaxed.owl ubiquitinyl-like hydrolase activity https://github.com/geneontology/go-ontology/issues/17398 pg 2020-07-01T12:37:19Z molecular_function owl:Class GO:0008233 biolink:NamedThing peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. tmpzr1t_l9r_go_relaxed.owl peptide hydrolase activity|hydrolase, acting on peptide bonds|protease activity|peptidase activity, acting on L-amino acid peptides|peptidase activity, acting on D-amino acid peptides|proteinase activity Reactome:R-HSA-3000243|Reactome:R-HSA-205112|Reactome:R-HSA-6803060|Reactome:R-HSA-5693319|Reactome:R-HSA-376149|Reactome:R-HSA-5684864|Reactome:R-HSA-448678|Reactome:R-HSA-3065959|EC:3.4.-.-|Reactome:R-HSA-3065958|Reactome:R-HSA-5655483|Reactome:R-HSA-5685902|Reactome:R-HSA-4167501|Reactome:R-HSA-3139027 GO:0070011|GO:0070010 molecular_function owl:Class GO:0042573 biolink:NamedThing retinoic acid metabolic process The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl vitamin A1 acid metabolic process|retinoic acid metabolism|vitamin A1 acid metabolism biological_process owl:Class GO:0032787 biolink:NamedThing monocarboxylic acid metabolic process The chemical reactions and pathways involving monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-). tmpzr1t_l9r_go_relaxed.owl monocarboxylate metabolic process|monocarboxylic acid metabolism biological_process owl:Class GO:0015413 biolink:NamedThing ABC-type nickel transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ni2+(out) = ADP + phosphate + Ni2+(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled nickel transmembrane transporter activity|nickel porter activity|nickel transporting ATPase activity|ATP-dependent nickel transmembrane transporter activity|nickel ABC transporter activity|nickel-transporting ATPase activity|nickel ABC transporter MetaCyc:3.6.3.24-RXN|MetaCyc:ABC-20-RXN|RHEA:15557|EC:7.2.2.11 GO:0102016 molecular_function owl:Class GO:0015099 biolink:NamedThing nickel cation transmembrane transporter activity Enables the transfer of nickel (Ni) cations from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity RHEA:29831 molecular_function owl:Class GO:0051903 biolink:NamedThing S-(hydroxymethyl)glutathione dehydrogenase activity Catalysis of the reaction: S-(hydroxymethyl)glutathione + NAD(P)+ = S-formylglutathione + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl NAD-dependent formaldehyde dehydrogenase activity|glutathione-dependent formaldehyde dehydrogenase activity|GD-FALDH activity|FDH activity|S-(hydroxymethyl)glutathione:NAD+ oxidoreductase activity|chi-ADH activity|NAD-linked formaldehyde dehydrogenase activity|ADH3 activity|NAD- and glutathione-dependent formaldehyde dehydrogenase activity|class III alcohol dehydrogenase activity|GS-FDH activity|formic dehydrogenase activity MetaCyc:RXN-2962|KEGG_REACTION:R07140|Reactome:R-HSA-5692237|KEGG_REACTION:R06983|EC:1.1.1.284|UM-BBD_reactionID:r1146 molecular_function owl:Class GO:0046598 biolink:NamedThing positive regulation of viral entry into host cell Any process that activates or increases the frequency, rate or extent of the introduction of viral entry into the host cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of viral penetration into host cell biological_process owl:Class GO:1903902 biolink:NamedThing positive regulation of viral life cycle Any process that activates or increases the frequency, rate or extent of viral life cycle. tmpzr1t_l9r_go_relaxed.owl activation of viral life cycle|up-regulation of viral replication|activation of lytic viral life cycle|up-regulation of lytic viral life cycle|up regulation of viral replication|upregulation of viral life cycle|up-regulation of viral infectious cycle|upregulation of viral assembly, maturation, egress, and release|up regulation of viral assembly, maturation, egress, and release|activation of viral assembly, maturation, egress, and release|positive regulation of viral assembly, maturation, egress, and release|up regulation of viral infectious cycle|upregulation of lytic viral life cycle|positive regulation of lytic viral life cycle|up regulation of viral life cycle|upregulation of viral infectious cycle|activation of viral infectious cycle|positive regulation of viral replication|activation of viral replication|up-regulation of viral life cycle|up regulation of lytic viral life cycle|positive regulation of viral infectious cycle|upregulation of viral replication|up-regulation of viral assembly, maturation, egress, and release pga 2015-02-09T10:22:25Z biological_process owl:Class GO:0030566 biolink:NamedThing snRNA modification guide activity Specifies the site of a posttranscriptional modification in an snRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0017069 biolink:NamedThing snRNA binding Binding to a small nuclear RNA (snRNA). tmpzr1t_l9r_go_relaxed.owl small nuclear RNA binding|base pairing with snRNA GO:0000945 molecular_function owl:Class GO:0006566 biolink:NamedThing threonine metabolic process The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl methionine and threonine metabolic process|methionine and threonine metabolism|threonine metabolism UM-BBD_pathwayID:met biological_process owl:Class GO:1990124 biolink:NamedThing messenger ribonucleoprotein complex A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules. tmpzr1t_l9r_go_relaxed.owl messenger ribonucleoprotein particle|mRNA-protein complex|mRNP|mRNP complex bf 2013-06-13T09:20:52Z cellular_component owl:Class GO:0043656 biolink:NamedThing host intracellular region That space within the plasma membrane of a host cell. tmpzr1t_l9r_go_relaxed.owl intracellular region of host|host intracellular cellular_component owl:Class GO:0033643 biolink:NamedThing host cell part Any constituent part of a host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:1901956 biolink:NamedThing positive regulation of retrograde dense core granule transport Any process that activates or increases the frequency, rate or extent of retrograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl upregulation of retrograde dense core granule transport|activation of retrograde dense core granule transport|up-regulation of retrograde dense core granule transport|up regulation of retrograde dense core granule transport pr 2013-02-19T13:36:52Z biological_process owl:Class GO:0060713 biolink:NamedThing labyrinthine layer morphogenesis The process in which the labyrinthine layer of the placenta is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-10T08:10:19Z biological_process owl:Class GO:0048598 biolink:NamedThing embryonic morphogenesis The process in which anatomical structures are generated and organized during the embryonic phase. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants. tmpzr1t_l9r_go_relaxed.owl embryonic anatomical structure morphogenesis GO:0048828 biological_process owl:Class GO:0030649 biolink:NamedThing aminoglycoside antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin. tmpzr1t_l9r_go_relaxed.owl aminoglycoside antibiotic breakdown|aminoglycoside antibiotic degradation|aminoglycoside antibiotic catabolism biological_process owl:Class GO:0030647 biolink:NamedThing aminoglycoside antibiotic metabolic process The chemical reactions and pathways involving an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin. tmpzr1t_l9r_go_relaxed.owl aminoglycoside antibiotic metabolism biological_process owl:Class GO:0003340 biolink:NamedThing negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis Any process that decreases the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-24T09:46:12Z biological_process owl:Class GO:0003339 biolink:NamedThing regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis Any process that modulates the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-24T09:43:04Z biological_process owl:Class GO:0103102 biolink:NamedThing UDP-glucose:8-methylthiooctylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 8-methylthiooctylhydroximate <=> H+ + 7-methylthioheptyldesulfoglucosinolate + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4327|EC:2.4.1.195 molecular_function owl:Class GO:0046249 biolink:NamedThing alpha-pinene catabolic process The chemical reactions and pathways resulting in the breakdown of alpha-pinene, a monoterpene that may be a significant factor affecting bacterial activities in nature. tmpzr1t_l9r_go_relaxed.owl alpha-pinene degradation|alpha-pinene catabolism|alpha-pinene breakdown biological_process owl:Class GO:0033074 biolink:NamedThing pinene catabolic process The chemical reactions and pathways leading to the breakdown of the monoterpenoid pinene; alpha-pinene is (1S,5S)-2,6,6-trimethylbicyclo[3.1.1]hept-2-ene, and beta-pinene is (1S,5S)-6,6-dimethyl-2-methylenebicyclo[3.1.1]heptane. tmpzr1t_l9r_go_relaxed.owl pinene catabolism|pinene breakdown|pinene degradation biological_process owl:Class GO:0035176 biolink:NamedThing social behavior Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group. tmpzr1t_l9r_go_relaxed.owl social behaviour|cooperative behavior Wikipedia:Social_behavior Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior. biological_process owl:Class GO:0007610 biolink:NamedThing behavior The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity. tmpzr1t_l9r_go_relaxed.owl behavioural response to stimulus|single-organism behavior|behaviour|behavioral response to stimulus Wikipedia:Behavior 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. 2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis). jl 2012-09-20T14:06:08Z GO:0023032|GO:0044708|GO:0044709 biological_process owl:Class GO:0042480 biolink:NamedThing negative regulation of eye photoreceptor cell development Any process that stops, prevents, or reduces the frequency, rate or extent of eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl down-regulation of eye photoreceptor cell development|downregulation of eye photoreceptor cell development|down regulation of eye photoreceptor cell development|negative regulation of eye photoreceptor development|inhibition of eye photoreceptor cell development biological_process owl:Class GO:0021770 biolink:NamedThing parahippocampal gyrus development The progression of the parahippocampal gyrus over time from its initial formation until its mature state. The parahippocampal gyrus is a ridge in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl hippocampal gyrus development Wikipedia:parahippocampal_gyrus biological_process owl:Class GO:0048856 biolink:NamedThing anatomical structure development The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl development of an anatomical structure biological_process owl:Class GO:0120086 biolink:NamedThing (3S)-(+)-asterisca-2(9),6-diene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (3S)-(+)-asterisca-2(9),6-diene. tmpzr1t_l9r_go_relaxed.owl asterisca-2(9),6-diene synthase activity krc 2017-08-02T14:55:38Z molecular_function owl:Class GO:0051947 biolink:NamedThing regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse Any process that modulates the frequency, rate or extent of the directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|regulation of 4-aminobutyrate reuptake|regulation of gamma-aminobutyric acid uptake involved in conduction of nerve impulse|regulation of GABA uptake during transmission of nerve impulse|regulation of GABA reuptake|regulation of 4-aminobutyrate uptake during transmission of nerve impulse|regulation of gamma-aminobutyric acid reuptake biological_process owl:Class GO:0033690 biolink:NamedThing positive regulation of osteoblast proliferation Any process that activates or increases the rate or extent of osteoblast proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of osteoblast proliferation|stimulation of osteoblast proliferation|up-regulation of osteoblast proliferation|upregulation of osteoblast proliferation|activation of osteoblast proliferation biological_process owl:Class GO:1904398 biolink:NamedThing positive regulation of neuromuscular junction development Any process that activates or increases the frequency, rate or extent of neuromuscular junction development. tmpzr1t_l9r_go_relaxed.owl up-regulation of neuromuscular junction stability|up regulation of neuromuscular junction stability|up-regulation of neuromuscular junction development|up regulation of neuromuscular junction development|upregulation of neuromuscular junction organization|activation of neuromuscular junction organization|activation of neuromuscular junction stability|positive regulation of neuromuscular junction stability|upregulation of neuromuscular junction stability|up-regulation of NMJ stability|activation of neuromuscular junction development|up-regulation of neuromuscular junction organization|upregulation of NMJ stability|upregulation of neuromuscular junction development|activation of NMJ stability|positive regulation of NMJ stability|up regulation of NMJ stability|positive regulation of neuromuscular junction organization|up regulation of neuromuscular junction organization sl 2015-06-23T19:23:54Z biological_process owl:Class GO:1904396 biolink:NamedThing regulation of neuromuscular junction development Any process that modulates the frequency, rate or extent of neuromuscular junction development. tmpzr1t_l9r_go_relaxed.owl regulation of neuromuscular junction organization|regulation of neuromuscular junction stability|regulation of NMJ stability sl 2015-06-23T19:23:42Z biological_process owl:Class GO:0070507 biolink:NamedThing regulation of microtubule cytoskeleton organization Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule cytoskeleton organisation|regulation of microtubule dynamics biological_process owl:Class GO:0032886 biolink:NamedThing regulation of microtubule-based process Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046643 biolink:NamedThing regulation of gamma-delta T cell activation Any process that modulates the frequency, rate or extent of gamma-delta T cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of gamma-delta T-cell activation|regulation of gamma-delta T lymphocyte activation|regulation of gamma-delta T-lymphocyte activation biological_process owl:Class GO:0004331 biolink:NamedThing fructose-2,6-bisphosphate 2-phosphatase activity Catalysis of the reaction: D-fructose 2,6-bisphosphate + H2O = D-fructose-6-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose-2,6-bisphosphate 2-phosphohydrolase activity|fructose-2,6-bisphosphatase activity|beta-D-fructose-2,6-bisphosphate 2-phosphohydrolase activity Reactome:R-HSA-5628905|MetaCyc:3.1.3.46-RXN|EC:3.1.3.46|Reactome:R-HSA-70262|RHEA:17289 GO:0004330 molecular_function owl:Class GO:0050308 biolink:NamedThing sugar-phosphatase activity Catalysis of the reaction: sugar phosphate + H2O = sugar + phosphate. tmpzr1t_l9r_go_relaxed.owl sugar-phosphate phosphatase activity|sugar-phosphate phosphohydrolase activity EC:3.1.3.23|MetaCyc:SUGAR-PHOSPHATASE-RXN|KEGG_REACTION:R00804 molecular_function owl:Class GO:0048239 biolink:NamedThing negative regulation of DNA recombination at telomere Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination within the telomere. tmpzr1t_l9r_go_relaxed.owl negative regulation of telomeric recombination at telomere|downregulation of telomeric recombination at telomere|down-regulation of telomeric recombination at telomere|suppression of telomeric recombination at telomere|down regulation of telomeric recombination at telomere|inhibition of telomeric recombination at telomere biological_process owl:Class GO:0045910 biolink:NamedThing negative regulation of DNA recombination Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. tmpzr1t_l9r_go_relaxed.owl down-regulation of DNA recombination|down regulation of DNA recombination|downregulation of DNA recombination|inhibition of DNA recombination biological_process owl:Class GO:0009699 biolink:NamedThing phenylpropanoid biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. tmpzr1t_l9r_go_relaxed.owl phenylpropanoid biosynthesis|phenylpropanoid formation|phenylpropanoid anabolism|phenylpropanoid synthesis biological_process owl:Class GO:0007165 biolink:NamedThing signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. tmpzr1t_l9r_go_relaxed.owl signaling cascade|signalling cascade|signal transduction by trans-phosphorylation|signaling pathway|signal transduction by cis-phosphorylation|signal transduction by protein phosphorylation|signal transduction by conformational transition|signalling pathway Wikipedia:Signal_transduction Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. GO:0023015|GO:0023014|GO:0023045|GO:0023016|GO:0023033 biological_process owl:Class GO:0050794 biolink:NamedThing regulation of cellular process Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. tmpzr1t_l9r_go_relaxed.owl regulation of cellular physiological process GO:0051244 biological_process owl:Class GO:1903678 biolink:NamedThing negative regulation of cap-independent translational initiation Any process that stops, prevents or reduces the frequency, rate or extent of cap-independent translational initiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cap-independent translational initiation|downregulation of cap-independent translational initiation|inhibition of cap-independent translational initiation|down regulation of cap-independent translational initiation bf 2014-11-27T19:52:28Z biological_process owl:Class GO:1903677 biolink:NamedThing regulation of cap-independent translational initiation Any process that modulates the frequency, rate or extent of cap-independent translational initiation. tmpzr1t_l9r_go_relaxed.owl bf 2014-11-27T19:52:20Z biological_process owl:Class GO:1904522 biolink:NamedThing positive regulation of myofibroblast cell apoptotic process Any process that activates or increases the frequency, rate or extent of myofibroblast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of MFB apoptosis|positive regulation of myofibroblast cell apoptosis|positive regulation of MFB apoptosis|up regulation of MFB apoptotic process|activation of MFB apoptotic process|positive regulation of MFB apoptotic process|up-regulation of myofibroblast cell apoptotic process|up-regulation of MFB apoptotic process|upregulation of myofibroblast cell apoptotic process|up regulation of myofibroblast cell apoptosis|upregulation of MFB apoptosis|upregulation of myofibroblast cell apoptosis|activation of MFB apoptosis|activation of myofibroblast cell apoptosis|activation of myofibroblast cell apoptotic process|up-regulation of myofibroblast cell apoptosis|upregulation of MFB apoptotic process|up regulation of myofibroblast cell apoptotic process|up regulation of MFB apoptosis sl 2015-07-29T15:52:26Z biological_process owl:Class GO:0003431 biolink:NamedThing growth plate cartilage chondrocyte development The progression of a growth plate cartilage chondrocyte over time from after its fate commitment to the mature cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T12:32:49Z biological_process owl:Class GO:0003433 biolink:NamedThing chondrocyte development involved in endochondral bone morphogenesis The progression of a chondrocyte over time from after its commitment to its mature state where the chondrocyte will contribute to the shaping of an endochondral bone. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T12:42:44Z biological_process owl:Class GO:0043128 biolink:NamedThing positive regulation of 1-phosphatidylinositol 4-kinase activity Any process that activates or increases the activity of 1-phosphatidylinositol 4-kinase. tmpzr1t_l9r_go_relaxed.owl up-regulation of 1-phosphatidylinositol 4-kinase activity|stimulation of 1-phosphatidylinositol 4-kinase activity|activation of 1-phosphatidylinositol 4-kinase activity|up regulation of 1-phosphatidylinositol 4-kinase activity|positive regulation of PI4K activity|upregulation of 1-phosphatidylinositol 4-kinase activity biological_process owl:Class GO:0090218 biolink:NamedThing positive regulation of lipid kinase activity Any process that increases the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-12T10:18:30Z biological_process owl:Class GO:1901599 biolink:NamedThing (-)-pinoresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (-)-pinoresinol formation|(-)-pinoresinol anabolism|(-)-pinoresinol biosynthesis|(-)-pinoresinol synthesis tb 2012-11-08T01:16:05Z biological_process owl:Class GO:0046189 biolink:NamedThing phenol-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. tmpzr1t_l9r_go_relaxed.owl phenol-containing compound synthesis|phenol-containing compound formation|phenol-containing compound anabolism|phenol-containing compound biosynthesis biological_process owl:Class GO:1900997 biolink:NamedThing benzene biosynthetic process The chemical reactions and pathways resulting in the formation of benzene. tmpzr1t_l9r_go_relaxed.owl benzene synthesis|benzene formation|benzene biosynthesis|benzene anabolism yaf 2012-06-14T02:54:01Z biological_process owl:Class GO:1903851 biolink:NamedThing negative regulation of cristae formation Any process that stops, prevents or reduces the frequency, rate or extent of cristae formation. tmpzr1t_l9r_go_relaxed.owl down regulation of cristae formation|down-regulation of cristae formation|inhibition of cristae formation|downregulation of cristae formation AN example of this is PINK1 in human (Q9BXM7) in PMID:19279012 inferred from mutant phenotype pad 2015-01-27T09:42:33Z biological_process owl:Class GO:1903850 biolink:NamedThing regulation of cristae formation Any process that modulates the frequency, rate or extent of cristae formation. tmpzr1t_l9r_go_relaxed.owl AN example of this is PINK1 in human (Q9BXM7) in PMID:19279012 inferred from mutant phenotype pad 2015-01-27T09:42:23Z biological_process owl:Class GO:1901983 biolink:NamedThing regulation of protein acetylation Any process that modulates the frequency, rate or extent of protein acetylation. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid acetylation ss 2013-03-14T00:40:07Z biological_process owl:Class GO:0031399 biolink:NamedThing regulation of protein modification process Any process that modulates the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032567 biolink:NamedThing dGTP binding Binding to dGTP, deoxyguanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032560 biolink:NamedThing guanyl deoxyribonucleotide binding Binding to a guanyl deoxyribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044758 biolink:NamedThing modulation by symbiont of host synaptic transmission Any process in which a symbiont organism modulates the frequency, rate or extent of synaptic transmission, communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse, in its host organism. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host synaptic transmission jl 2012-12-06T15:34:05Z biological_process owl:Class GO:0044068 biolink:NamedThing modulation by symbiont of host cellular process Any process in which a symbiont organism modulates the frequency, rate or extent of a cellular process, any process that is carried out at the cellular level, but not necessarily restricted to a single cell, in its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of host cellular process by symbiont|regulation of host cellular process by symbiont|regulation by symbiont of host cellular process biological_process owl:Class GO:0035579 biolink:NamedThing specific granule membrane The lipid bilayer surrounding a specific granule, a granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase. tmpzr1t_l9r_go_relaxed.owl secondary granule membrane bf 2010-10-05T01:32:47Z cellular_component owl:Class GO:0030667 biolink:NamedThing secretory granule membrane The lipid bilayer surrounding a secretory granule. tmpzr1t_l9r_go_relaxed.owl secretory vesicle membrane cellular_component owl:Class GO:1903852 biolink:NamedThing positive regulation of cristae formation Any process that activates or increases the frequency, rate or extent of cristae formation. tmpzr1t_l9r_go_relaxed.owl up regulation of cristae formation|activation of cristae formation|up-regulation of cristae formation|upregulation of cristae formation AN example of this is PINK1 in human (Q9BXM7) in PMID:19279012 inferred from mutant phenotype pad 2015-01-27T09:42:42Z biological_process owl:Class GO:0010822 biolink:NamedThing positive regulation of mitochondrion organization Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a mitochondrion. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrion organisation biological_process owl:Class GO:0032811 biolink:NamedThing negative regulation of epinephrine secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of epinephrine. tmpzr1t_l9r_go_relaxed.owl down-regulation of epinephrine secretion|negative regulation of adrenaline secretion|down regulation of epinephrine secretion|inhibition of epinephrine secretion|downregulation of epinephrine secretion biological_process owl:Class GO:0033604 biolink:NamedThing negative regulation of catecholamine secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a catecholamine. tmpzr1t_l9r_go_relaxed.owl down-regulation of catecholamine secretion|downregulation of catecholamine secretion|down regulation of catecholamine secretion|inhibition of catecholamine secretion biological_process owl:Class GO:0102794 biolink:NamedThing cinnamaldehyde:oxygen oxidoreductase activity Catalysis of the reaction: cinnamaldehyde + O2 + H2O = H+ + trans-cinnamate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8089|EC:1.2.3.9 molecular_function owl:Class GO:0016623 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl EC:1.2.3.- molecular_function owl:Class GO:0101006 biolink:NamedThing protein histidine phosphatase activity Catalysis of the reaction: protein histidine phosphate + H2O = protein histidine + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphohistidine phosphatase activity https://github.com/geneontology/go-ontology/issues/21517 EC:3.9.1.3|RHEA:47964 This eukaryotic enzyme dephosphorylates phosphorylated histidine residues within proteins and peptides. The enzyme acts on phosphate groups attached to both the pros- (RHEA:47964) and tele- (RHEA:47960) nitrogen atoms, but the pros- position is somewhat preferred (by a factor of two at the most) (EC:3.9.1.3). GO:0008969 molecular_function owl:Class GO:0016825 biolink:NamedThing hydrolase activity, acting on acid phosphorus-nitrogen bonds Catalysis of the hydrolysis of any acid phosphorus-nitrogen bond. tmpzr1t_l9r_go_relaxed.owl EC:3.9.1.- molecular_function owl:Class GO:0030811 biolink:NamedThing regulation of nucleotide catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of nucleotide catabolism|regulation of nucleotide breakdown|regulation of nucleotide degradation biological_process owl:Class GO:0034614 biolink:NamedThing cellular response to reactive oxygen species Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. tmpzr1t_l9r_go_relaxed.owl cellular response to AOS|cellular response to ROI|cellular response to reactive oxygen intermediate|cellular response to reactive oxidative species|cellular response to active oxygen species|cellular response to ROS biological_process owl:Class GO:0034599 biolink:NamedThing cellular response to oxidative stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl adaptive response to oxidative stress biological_process owl:Class GO:0018970 biolink:NamedThing toluene metabolic process The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products such as gasoline and commonly used as a paint thinning agent and in other solvent applications. tmpzr1t_l9r_go_relaxed.owl methylbenzene metabolic process|toluene metabolism|methylbenzene metabolism biological_process owl:Class GO:0072490 biolink:NamedThing toluene-containing compound metabolic process The chemical reactions and pathways involving toluene, methylbenzene (formula C7H8), or any of its derivatives. tmpzr1t_l9r_go_relaxed.owl toluene-containing compound metabolism|toluene and derivative metabolic process mah 2010-12-14T03:46:52Z biological_process owl:Class GO:0046471 biolink:NamedThing phosphatidylglycerol metabolic process The chemical reactions and pathways involving phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. They are important constituents of cell membranes. tmpzr1t_l9r_go_relaxed.owl phosphatidylglycerol metabolism biological_process owl:Class GO:0006650 biolink:NamedThing glycerophospholipid metabolic process The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. tmpzr1t_l9r_go_relaxed.owl glycerophospholipid metabolism|phosphoglyceride metabolic process|phosphoglyceride metabolism|alpha-glycerophosphate pathway GO:0006652 biological_process owl:Class GO:0002345 biolink:NamedThing peripheral B cell receptor editing The process that takes place mainly in germinal center B cells in which a large number of mutations are generated in the heavy chain and light chain V-region genes and their immediately surrounding introns in order to increase antibody diversity and contribute to affinity maturation. tmpzr1t_l9r_go_relaxed.owl peripheral B-cell receptor editing|peripheral B-lymphocyte receptor editing|peripheral B lymphocyte receptor editing biological_process owl:Class GO:0019686 biolink:NamedThing purine nucleoside interconversion The chemical reactions and pathways by which a purine nucleoside is synthesized from another purine nucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015949 biolink:NamedThing nucleobase-containing small molecule interconversion The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule. tmpzr1t_l9r_go_relaxed.owl MetaCyc:P1-PWY biological_process owl:Class GO:0047478 biolink:NamedThing aspartate-ammonia ligase (ADP-forming) activity Catalysis of the reaction: L-aspartate + ATP + NH(4)(+) = L-asparagine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl asparagine synthetase (ADP-forming) activity|asparagine synthetase (adenosine diphosphate-forming)|L-aspartate:ammonia ligase (ADP-forming) EC:6.3.1.4|MetaCyc:6.3.1.4-RXN|RHEA:14197|KEGG_REACTION:R00482 molecular_function owl:Class GO:0016880 biolink:NamedThing acid-ammonia (or amide) ligase activity Catalysis of the ligation of an acid to ammonia (NH3) or an amide via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl amide synthase activity EC:6.3.1.- molecular_function owl:Class GO:0017190 biolink:NamedThing N-terminal peptidyl-aspartic acid acetylation The acetylation of the N-terminal aspartic acid of proteins; catalyzed by aspartate N-acetyltransferase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0042 See also the molecular function term 'aspartate N-acetyltransferase activity ; GO:0017188'. biological_process owl:Class GO:0018197 biolink:NamedThing peptidyl-aspartic acid modification The modification of peptidyl-aspartic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051170 biolink:NamedThing import into nucleus The directed movement of substances into the nucleus. tmpzr1t_l9r_go_relaxed.owl single-organism nuclear import|nuclear import|substance nuclear import|single organism nuclear import jl 2013-12-19T15:26:34Z GO:1902593 biological_process owl:Class GO:0006913 biolink:NamedThing nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm. tmpzr1t_l9r_go_relaxed.owl nucleocytoplasmic shuttling Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane, and is not traversed. GO:0000063 biological_process owl:Class GO:0014895 biolink:NamedThing smooth muscle hypertrophy The enlargement or overgrowth of all or part of an organ due to an increase in size of its smooth muscle cells without cell division. Physiological hypertrophy is a normal process during development, and can also occur in mature structures on demand. In the uterus, smooth muscle cells undergo hypertrophy during pregnancy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014805 biolink:NamedThing smooth muscle adaptation Any process in which smooth muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities. tmpzr1t_l9r_go_relaxed.owl smooth muscle plasticity biological_process owl:Class GO:0071247 biolink:NamedThing cellular response to chromate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chromate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:46:01Z biological_process owl:Class GO:0071241 biolink:NamedThing cellular response to inorganic substance Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:35:49Z biological_process owl:Class GO:0071297 biolink:NamedThing cellular response to cobalamin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalamin (vitamin B12) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to vitamin B12 mah 2009-12-10T04:28:45Z biological_process owl:Class GO:1901701 biolink:NamedThing cellular response to oxygen-containing compound Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to oxygen molecular entity pr 2012-12-13T15:11:42Z biological_process owl:Class GO:0048481 biolink:NamedThing plant ovule development The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099402 biolink:NamedThing plant organ development Development of a plant organ, a multi-tissue plant structure that forms a functional unit. tmpzr1t_l9r_go_relaxed.owl development of a plant organ biological_process owl:Class GO:0047575 biolink:NamedThing 4-carboxymuconolactone decarboxylase activity Catalysis of the reaction: (R)-2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoate + H(+) = 5-oxo-4,5-dihydro-2-furylacetate + CO(2). tmpzr1t_l9r_go_relaxed.owl 4-carboxymuconolactone carboxy-lyase activity|4-carboxymonolactone carboxy-lyase activity|4-carboxymuconolactone carboxy-lyase (4,5-dihydro-5-oxofuran-2-acetate-forming)|gamma-4-carboxymuconolactone decarboxylase activity EC:4.1.1.44|MetaCyc:4-CARBOXYMUCONOLACTONE-DECARBOXYLASE-RXN|KEGG_REACTION:R03470|RHEA:23348 molecular_function owl:Class GO:0016831 biolink:NamedThing carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. tmpzr1t_l9r_go_relaxed.owl decarboxylase activity EC:4.1.1.-|Reactome:R-HSA-71223|Reactome:R-HSA-6814165|Reactome:R-HSA-6787757 molecular_function owl:Class GO:0102346 biolink:NamedThing 3-hydroxy-cerotoyl-CoA dehydratase activity Catalysis of the reaction: (R)-3-hydroxycerotoyl-CoA(4-) <=> trans-2-hexacosenoyl-CoA(4-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13305 molecular_function owl:Class GO:0051942 biolink:NamedThing negative regulation of amino acid uptake involved in synaptic transmission Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of amino acid neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of amino acid neurotransmitter uptake|inhibition of amino acid uptake during transmission of nerve impulse|downregulation of amino acid uptake during transmission of nerve impulse|down-regulation of amino acid uptake during transmission of nerve impulse|down regulation of amino acid uptake during transmission of nerve impulse|negative regulation of amino acid uptake during transmission of nerve impulse|negative regulation of amino acid neurotransmitter reuptake biological_process owl:Class GO:0072564 biolink:NamedThing blood microparticle formation The cellular component organization process in which microparticles bud off from a parent cell. A microparticle is a phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. tmpzr1t_l9r_go_relaxed.owl microparticle generation|microparticle release mah 2011-01-28T02:15:50Z biological_process owl:Class GO:0016043 biolink:NamedThing cellular component organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component. tmpzr1t_l9r_go_relaxed.owl cellular component organisation in other organism|cellular component organization at cellular level|cell organization and biogenesis|cellular component organization in other organism|cellular component organisation at cellular level|cell organisation GO:0044235|GO:0071842 biological_process owl:Class GO:0050522 biolink:NamedThing oxidoreductase activity, acting on phosphorus or arsenic in donors, with other known acceptors Catalysis of an oxidation-reduction (redox) reaction in which phosphorus or arsenic acts as a hydrogen or electron donor and reduces a known acceptor other than disulfide, NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.20.98.- molecular_function owl:Class GO:0030613 biolink:NamedThing oxidoreductase activity, acting on phosphorus or arsenic in donors Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors EC:1.20.-.- molecular_function owl:Class GO:0033699 biolink:NamedThing DNA 5'-adenosine monophosphate hydrolase activity Catalysis of the reaction: 5'-AMP-DNA + H2O = AMP + DNA; nucleophilic release of a covalently linked adenylate residue from a DNA strand, leaving a 5' phosphate terminus. tmpzr1t_l9r_go_relaxed.owl DNA deadenylation|AMP-removal activity|DNA 5'-adenylate hydrolase activity|DNA adenylate hydrolysis activity|DNA de-adenylation molecular_function owl:Class GO:0035312 biolink:NamedThing 5'-3' exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008328 biolink:NamedThing ionotropic glutamate receptor complex A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098878 biolink:NamedThing neurotransmitter receptor complex Any protein complex that is capable of functioning as a neurotransmitter receptor. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990308 biolink:NamedThing type-I dockerin domain binding Binding to a type-I dockerin domain of a protein. Type-I dockerin domain is the binding partner of type-1 cohesin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T03:10:37Z molecular_function owl:Class GO:0035492 biolink:NamedThing negative regulation of leukotriene production involved in inflammatory response Any process that decreases the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T10:50:55Z biological_process owl:Class GO:0050728 biolink:NamedThing negative regulation of inflammatory response Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response. tmpzr1t_l9r_go_relaxed.owl down regulation of inflammatory response|inhibition of inflammatory response|downregulation of inflammatory response|down-regulation of inflammatory response|anti-inflammatory response GO:0030236 biological_process owl:Class GO:0002835 biolink:NamedThing negative regulation of response to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of a response to tumor cell. tmpzr1t_l9r_go_relaxed.owl inhibition of response to tumor cell|downregulation of response to tumor cell|down-regulation of response to tumor cell|down regulation of response to tumor cell|negative regulation of response to tumour cell biological_process owl:Class GO:0010958 biolink:NamedThing regulation of amino acid import across plasma membrane Any process that modulates the frequency, rate or extent of amino acid import into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of amino acid import tb 2009-05-06T11:33:12Z biological_process owl:Class GO:0070795 biolink:NamedThing positive regulation of conidiophore development Any process that activates or increases the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:08:29Z biological_process owl:Class GO:0070793 biolink:NamedThing regulation of conidiophore development Any process that modulates the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:04:29Z biological_process owl:Class GO:0071075 biolink:NamedThing CUGBP1-eIF2 complex A protein complex that contains the eukaryotic translation initiation factor 2 complex (EIF2), CUG binding protein 1, and several endoplasmic reticulum proteins; the complex is involved in the regulation of translation. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-06T01:43:30Z cellular_component owl:Class GO:0042479 biolink:NamedThing positive regulation of eye photoreceptor cell development Any process that activates or increases the frequency, rate or extent of eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl stimulation of eye photoreceptor cell development|activation of eye photoreceptor cell development|up-regulation of eye photoreceptor cell development|up regulation of eye photoreceptor cell development|upregulation of eye photoreceptor cell development|positive regulation of eye photoreceptor development biological_process owl:Class GO:0010720 biolink:NamedThing positive regulation of cell development Any process that increases the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000233 biolink:NamedThing negative regulation of rRNA processing Any process that stops, prevents, or reduces the frequency, rate or extent of rRNA processing. tmpzr1t_l9r_go_relaxed.owl negative regulation of 35S primary transcript processing mah 2010-11-10T12:11:33Z biological_process owl:Class GO:0051253 biolink:NamedThing negative regulation of RNA metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving RNA. tmpzr1t_l9r_go_relaxed.owl down-regulation of RNA metabolic process|down regulation of RNA metabolic process|downregulation of RNA metabolic process|inhibition of RNA metabolic process|negative regulation of RNA metabolism biological_process owl:Class GO:2000569 biolink:NamedThing regulation of T-helper 2 cell activation Any process that modulates the frequency, rate or extent of T-helper 2 cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of Th2 cell activation ebc 2011-04-03T09:14:53Z biological_process owl:Class GO:2000514 biolink:NamedThing regulation of CD4-positive, alpha-beta T cell activation Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:36:56Z biological_process owl:Class GO:0000209 biolink:NamedThing protein polyubiquitination Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. tmpzr1t_l9r_go_relaxed.owl protein polyubiquitylation|protein polyubiquitinylation|polyubiquitin biological_process owl:Class GO:0016567 biolink:NamedThing protein ubiquitination The process in which one or more ubiquitin groups are added to a protein. tmpzr1t_l9r_go_relaxed.owl protein ubiquitinylation|protein ubiquitylation biological_process owl:Class GO:0045662 biolink:NamedThing negative regulation of myoblast differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl inhibition of myoblast differentiation|down regulation of myoblast differentiation|down-regulation of myoblast differentiation|downregulation of myoblast differentiation biological_process owl:Class GO:0045661 biolink:NamedThing regulation of myoblast differentiation Any process that modulates the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045835 biolink:NamedThing negative regulation of meiotic nuclear division Any process that stops, prevents, or reduces the frequency, rate or extent of meiosis. tmpzr1t_l9r_go_relaxed.owl downregulation of meiosis|down-regulation of meiosis|negative regulation of meiosis|inhibition of meiosis|down regulation of meiosis biological_process owl:Class GO:0051447 biolink:NamedThing negative regulation of meiotic cell cycle Any process that stops, prevents or reduces the rate or extent of progression through the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl inhibition of progression through meiotic cell cycle|down-regulation of progression through meiotic cell cycle|downregulation of progression through meiotic cell cycle|down regulation of progression through meiotic cell cycle|negative regulation of progression through meiotic cell cycle|negative regulation of meiotic cell cycle progression biological_process owl:Class GO:0052862 biolink:NamedThing glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group Catalysis of the endohydrolysis of (1->4)-linkages in beta-D-glucans when the glucose residue whose reducing group is involved in the linkage to be hydrolysed is itself substituted at C-3. tmpzr1t_l9r_go_relaxed.owl laminaranase activity|laminarinase activity|1,3-(1,4)-beta-D-glucan 4-glucanohydrolase activity MetaCyc:3.2.1.6-RXN|EC:3.2.1.6 ai 2011-12-06T05:27:26Z molecular_function owl:Class GO:0052736 biolink:NamedThing beta-glucanase activity Catalysis of the hydrolysis of linkages in beta-D-glucans; beta-glucans are polysaccharides of D-glucose monomers linked by beta-glycosidic bonds. tmpzr1t_l9r_go_relaxed.owl beta-D-glucanase activity 2011-08-19T03:40:56Z molecular_function owl:Class GO:0021551 biolink:NamedThing central nervous system morphogenesis The process in which the anatomical structure of the central nervous system is generated and organized. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006463 biolink:NamedThing steroid hormone receptor complex assembly The aggregation, arrangement and bonding together of a set of components to form a steroid hormone receptor complex, an intracellular receptor that binds steroid hormones. The complex is often a dimer, and forms after the steroid has bound the receptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034622 biolink:NamedThing cellular protein-containing complex assembly The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl cellular protein complex assembly|cellular macromolecule complex assembly GO:0043623 biological_process owl:Class GO:0043583 biolink:NamedThing ear development The process whose specific outcome is the progression of the ear over time, from its formation to the mature structure. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals. tmpzr1t_l9r_go_relaxed.owl hearing organ development biological_process owl:Class GO:0007423 biolink:NamedThing sensory organ development The process whose specific outcome is the progression of sensory organs over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl sense organ development biological_process owl:Class GO:0002858 biolink:NamedThing regulation of natural killer cell mediated cytotoxicity directed against tumor cell target Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990814 biolink:NamedThing DNA/DNA annealing activity An activity that faciliates the formation of a complementary double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl DNA reannealing activity https://github.com/geneontology/go-ontology/issues/2161 vw 2015-07-29T12:35:03Z molecular_function owl:Class GO:0140666 biolink:NamedThing annealing activity An activity that facilitates the formation of a complementary double-stranded polynucleotide molecule. tmpzr1t_l9r_go_relaxed.owl renaturation https://github.com/geneontology/go-ontology/issues/21614 pr 2014-06-13T10:18:43Z GO:0097617 molecular_function owl:Class GO:1900613 biolink:NamedThing F-9775B catabolic process The chemical reactions and pathways resulting in the breakdown of F-9775B. tmpzr1t_l9r_go_relaxed.owl F-9775B catabolism|F-9775B degradation|F-9775B breakdown di 2012-05-15T07:03:24Z biological_process owl:Class GO:1901377 biolink:NamedThing organic heteropentacyclic compound catabolic process The chemical reactions and pathways resulting in the breakdown of organic heteropentacyclic compound. tmpzr1t_l9r_go_relaxed.owl organic heteropentacyclic compound breakdown|organic heteropentacyclic compound catabolism|organic heteropentacyclic compound degradation bf 2012-09-28T12:51:51Z biological_process owl:Class GO:0097196 biolink:NamedThing Shu complex A protein complex involved in error-free DNA post-replication repair (PRR). In Saccharomyces cerevisiae the complex contains Csm2p, Psy3p, Shu1p, and Shu2p. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-01T05:11:08Z cellular_component owl:Class GO:1990391 biolink:NamedThing DNA repair complex A protein complex involved in DNA repair processes including direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. tmpzr1t_l9r_go_relaxed.owl DNA damage repair complex|WHY1 complex bhm 2014-06-04T09:15:24Z cellular_component owl:Class GO:0043451 biolink:NamedThing alkene catabolic process The chemical reactions and pathways resulting in the breakdown of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. tmpzr1t_l9r_go_relaxed.owl alkene breakdown|alkene degradation|alkene catabolism biological_process owl:Class GO:0043449 biolink:NamedThing cellular alkene metabolic process The chemical reactions and pathways involving an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl alkene metabolism biological_process owl:Class GO:1904266 biolink:NamedThing regulation of Schwann cell chemotaxis Any process that modulates the frequency, rate or extent of Schwann cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-28T17:47:41Z biological_process owl:Class GO:0050920 biolink:NamedThing regulation of chemotaxis Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019619 biolink:NamedThing 3,4-dihydroxybenzoate catabolic process The chemical reactions and pathways resulting in the breakdown of 3,4-dihydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl protocatechuate degradation|protocatechuate catabolic process|protocatechuate breakdown|protocatechuate catabolism biological_process owl:Class GO:0034362 biolink:NamedThing low-density lipoprotein particle A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triglyceride and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver. tmpzr1t_l9r_go_relaxed.owl LDL particle|LDL complex|low-density lipoprotein complex cellular_component owl:Class GO:0034358 biolink:NamedThing plasma lipoprotein particle A spherical particle with a hydrophobic core of triglycerides and/or cholesterol esters, surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins. Plasma lipoprotein particles transport lipids, which are non-covalently associated with the particles, in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032819 biolink:NamedThing positive regulation of natural killer cell proliferation Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation. tmpzr1t_l9r_go_relaxed.owl stimulation of natural killer cell proliferation|up-regulation of natural killer cell proliferation|upregulation of natural killer cell proliferation|up regulation of natural killer cell proliferation|activation of natural killer cell proliferation|positive regulation of NK cell proliferation biological_process owl:Class GO:0032817 biolink:NamedThing regulation of natural killer cell proliferation Any process that modulates the frequency, rate or extent of natural killer cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell proliferation biological_process owl:Class GO:0071541 biolink:NamedThing eukaryotic translation initiation factor 3 complex, eIF3m An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3m. tmpzr1t_l9r_go_relaxed.owl eIF3m-containing eukaryotic translation initiation factor 3 complex mah 2010-01-12T02:26:41Z cellular_component owl:Class GO:0005852 biolink:NamedThing eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. tmpzr1t_l9r_go_relaxed.owl eIF-3|eIF3 cellular_component owl:Class GO:0086046 biolink:NamedThing membrane depolarization during SA node cell action potential The process in which SA node cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl membrane depolarization involved in regulation of SAN cardiac muscle cell action potential|membrane depolarization involved in regulation of SA node cardiac muscle cell action potential|membrane depolarization involved in regulation of sinoatrial node cardiac muscle cell action potential|membrane depolarization involved in regulation of sinus node cardiac muscle cell action potential dph 2011-11-16T10:52:57Z biological_process owl:Class GO:0051899 biolink:NamedThing membrane depolarization The process in which membrane potential decreases with respect to its steady-state potential, usually from negative potential to a more positive potential. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative steady-state resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000815 biolink:NamedThing regulation of mRNA stability involved in response to oxidative stress A process of regulation of mRNA stability that is involved in a response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl mah 2011-07-11T04:40:56Z biological_process owl:Class GO:0010610 biolink:NamedThing regulation of mRNA stability involved in response to stress Any process that modulates the propensity of mRNA molecules to degradation that is part of a change in state or activity of a cell as a result of an exogenous disturbance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902248 biolink:NamedThing 5-O-phosphono-alpha-D-ribofuranosyl diphosphate binding Binding to 5-O-phosphono-alpha-D-ribofuranosyl diphosphate. tmpzr1t_l9r_go_relaxed.owl 5-phosphoribose 1-diphosphate binding|phosphoribosylpyrophosphate binding mah 2013-06-20T16:20:29Z molecular_function owl:Class GO:0097367 biolink:NamedThing carbohydrate derivative binding Binding to a carbohydrate derivative. tmpzr1t_l9r_go_relaxed.owl pr 2012-08-02T13:03:39Z molecular_function owl:Class GO:0000462 biolink:NamedThing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl maturation of 18S rRNA GO:1990041 biological_process owl:Class GO:0030490 biolink:NamedThing maturation of SSU-rRNA Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule. tmpzr1t_l9r_go_relaxed.owl processing of 20S pre-rRNA|SSU-rRNA maturation biological_process owl:Class GO:1903755 biolink:NamedThing positive regulation of SUMO transferase activity Any process that activates or increases the frequency, rate or extent of SUMO transferase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of SUMO conjugating enzyme activity|activation of SUMO transferase activity|up-regulation of SUMO transferase activity|up-regulation of SMT3 conjugating enzyme|upregulation of SUMO conjugating enzyme activity|upregulation of SMT3 conjugating enzyme|positive regulation of SUMO conjugating enzyme activity|upregulation of SUMO transferase activity|up regulation of SMT3 conjugating enzyme|up regulation of SUMO conjugating enzyme activity|activation of SUMO conjugating enzyme activity|positive regulation of SMT3 conjugating enzyme|up regulation of SUMO transferase activity|activation of SMT3 conjugating enzyme rl 2014-12-18T13:05:59Z biological_process owl:Class GO:1903182 biolink:NamedThing regulation of SUMO transferase activity Any process that modulates the frequency, rate or extent of SUMO ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of SUMO conjugating enzyme activity|regulation of SMT3 conjugating enzyme bf 2014-07-14T14:01:40Z biological_process owl:Class GO:1903448 biolink:NamedThing geraniol biosynthetic process The chemical reactions and pathways resulting in the formation of geraniol. tmpzr1t_l9r_go_relaxed.owl geraniol synthesis|geraniol anabolism|geraniol biosynthesis|geraniol formation di 2014-09-19T08:18:52Z biological_process owl:Class GO:0120255 biolink:NamedThing olefinic compound biosynthetic process The chemical reactions and pathways resulting in the formation of an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C). tmpzr1t_l9r_go_relaxed.owl alkene substituted compound biosynthetic process|alkene substituted compound synthesis|alkene substituted compound anabolism|alkene substituted compound anabolic process|alkene substituted compound biosynthesis https://github.com/geneontology/go-ontology/issues/19936 krc 2020-09-02T23:30:20Z biological_process owl:Class GO:1903634 biolink:NamedThing negative regulation of leucine-tRNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of leucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of leucyl-tRNA synthetase activity|negative regulation of leucine-tRNA synthetase activity|downregulation of L-leucine:tRNALeu ligase (AMP-forming)|down regulation of leucyl-transfer ribonucleate synthetase activity|inhibition of leucyl-transfer ribonucleic acid synthetase activity|inhibition of leucyl-transfer RNA synthetase activity|negative regulation of leucine translase activity|down regulation of leucine-tRNA ligase activity|down regulation of L-leucine:tRNALeu ligase (AMP-forming)|inhibition of leucine-tRNA ligase activity|downregulation of leucine translase activity|down-regulation of leucyl-tRNA synthetase activity|down-regulation of leucyl-transfer ribonucleate synthetase activity|negative regulation of leucyl-transfer ribonucleate synthetase activity|downregulation of leucine-tRNA synthetase activity|inhibition of leucine-tRNA synthetase activity|down-regulation of leucyl-transfer RNA synthetase activity|inhibition of leucyl-transfer ribonucleate synthetase activity|negative regulation of leucyl-transfer RNA synthetase activity|down-regulation of L-leucine:tRNALeu ligase (AMP-forming)|down regulation of leucine-tRNA synthetase activity|down-regulation of leucyl-transfer ribonucleic acid synthetase activity|downregulation of leucyl-transfer ribonucleate synthetase activity|downregulation of leucyl-tRNA synthetase activity|down-regulation of leucine translase activity|negative regulation of leucyl-tRNA synthetase activity|inhibition of L-leucine:tRNALeu ligase (AMP-forming)|down regulation of leucyl-transfer RNA synthetase activity|inhibition of leucine translase activity|down regulation of leucine translase activity|negative regulation of leucyl-transfer ribonucleic acid synthetase activity|down-regulation of leucine-tRNA synthetase activity|downregulation of leucyl-transfer RNA synthetase activity|downregulation of leucyl-transfer ribonucleic acid synthetase activity|down-regulation of leucine-tRNA ligase activity|negative regulation of L-leucine:tRNALeu ligase (AMP-forming)|inhibition of leucyl-tRNA synthetase activity|down regulation of leucyl-transfer ribonucleic acid synthetase activity|downregulation of leucine-tRNA ligase activity sl 2014-11-20T00:24:56Z biological_process owl:Class GO:1903631 biolink:NamedThing negative regulation of aminoacyl-tRNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of aminoacyl-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of aminoacyl-tRNA synthetase activity|inhibition of aminoacyl-tRNA ligase activity|down-regulation of aminoacyl-tRNA synthetase activity|inhibition of aminoacyl-tRNA synthetase auxiliary protein activity|downregulation of aminoacyl-tRNA ligase activity|negative regulation of aminoacyl-tRNA synthetase activity|negative regulation of aminoacyl-tRNA synthetase auxiliary protein activity|downregulation of aminoacyl-tRNA synthetase activity|down regulation of aminoacyl-tRNA synthetase auxiliary protein activity|down-regulation of aminoacyl-tRNA ligase activity|down-regulation of aminoacyl-tRNA synthetase auxiliary protein activity|down regulation of aminoacyl-tRNA ligase activity|downregulation of aminoacyl-tRNA synthetase auxiliary protein activity|down regulation of aminoacyl-tRNA synthetase activity sl 2014-11-20T00:22:12Z biological_process owl:Class GO:0005999 biolink:NamedThing xylulose biosynthetic process The chemical reactions and pathways resulting in the formation of xylulose, the ketopentose threo-2-pentulose. tmpzr1t_l9r_go_relaxed.owl xylulose anabolism|xylulose biosynthesis|xylulose synthesis|xylulose formation biological_process owl:Class GO:0005997 biolink:NamedThing xylulose metabolic process The chemical reactions and pathways involving xylulose, the ketopentose threo-2-pentulose. tmpzr1t_l9r_go_relaxed.owl xylulose metabolism biological_process owl:Class GO:2000754 biolink:NamedThing regulation of sphingomyelin catabolic process Any process that modulates the frequency, rate or extent of sphingomyelin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of sphingomyelin catabolism|regulation of sphingomyelin degradation|regulation of sphingomyelin breakdown rl 2011-06-16T03:17:30Z biological_process owl:Class GO:0035554 biolink:NamedThing termination of Roundabout signal transduction The signaling process in which signaling from the receptor ROBO is brought to an end, rather than being reversibly modulated. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-14T11:08:12Z biological_process owl:Class GO:0023021 biolink:NamedThing termination of signal transduction The signaling process in which signal transduction is brought to an end rather than being reversibly modulated. tmpzr1t_l9r_go_relaxed.owl Note that this term encompasses both the control point when the instruction is given for the process to cease and the actual cessation of the process. A process can persist for some time after that signal that induced the process is withdrawn. 2010-02-16T09:30:50Z biological_process owl:Class GO:0032657 biolink:NamedThing regulation of interleukin-14 production Any process that modulates the frequency, rate, or extent of interleukin-14 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-14 biosynthetic process|regulation of IL-14 production GO:0045369 biological_process owl:Class GO:0001817 biolink:NamedThing regulation of cytokine production Any process that modulates the frequency, rate, or extent of production of a cytokine. tmpzr1t_l9r_go_relaxed.owl regulation of cytokine synthesis|regulation of cytokine biosynthesis|regulation of cytokine formation|regulation of cytokine secretion|regulation of cytokine biosynthetic process|regulation of cytokine anabolism GO:0050707|GO:0042035 biological_process owl:Class GO:0048624 biolink:NamedThing plantlet formation on parent plant The process in which a new plantlet develops from a meristem on the plant body. As part of this process, when the plantlet is large enough to live independently, the physical connection between the new plantlet and the main plant is severed. tmpzr1t_l9r_go_relaxed.owl vegetative vivipary|vivipary biological_process owl:Class GO:0044706 biolink:NamedThing multi-multicellular organism process A multicellular organism process which involves another multicellular organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 jl 2012-09-19T16:06:16Z biological_process owl:Class GO:1904202 biolink:NamedThing negative regulation of iodide transport Any process that stops, prevents or reduces the frequency, rate or extent of iodide transport. tmpzr1t_l9r_go_relaxed.owl inhibition of iodide transport|down-regulation of iodide transport|down regulation of iodide transport|downregulation of iodide transport sl 2015-05-08T15:20:03Z biological_process owl:Class GO:2000397 biolink:NamedThing positive regulation of ubiquitin-dependent endocytosis Any process that activates or increases the frequency, rate or extent of ubiquitin-dependent endocytosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of ubiquitin-mediated endocytosis mah 2011-02-22T11:25:42Z biological_process owl:Class GO:0004129 biolink:NamedThing cytochrome-c oxidase activity Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl complex IV (mitochondrial electron transport) activity|indophenol oxidase|Warburg's respiratory enzyme activity|aa3-type cytochrome c oxidase|cytochrome oxidase activity|cytochrome aa3 activity|indophenolase|caa3-type cytochrome c oxidase|cytochrome a3 activity|cytochrome c oxidase activity|ba3-type cytochrome c oxidase|cbb3-type cytochrome c oxidase https://github.com/geneontology/go-ontology/issues/20924|https://github.com/geneontology/go-ontology/issues/21275 Reactome:R-HSA-163214|EC:7.1.1.9|MetaCyc:CYTOCHROME-C-OXIDASE-RXN|RHEA:11436 The reduction of O2 to water is accompanied by the extrusion of four protons from the intramitochondrial compartment. molecular_function owl:Class GO:0009055 biolink:NamedThing electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl electron transporter activity|electron donor activity|electron acceptor activity|electron carrier https://github.com/geneontology/go-ontology/issues/21334 Reactome:R-HSA-169260|Reactome:R-HSA-2564826 Note that this term should only be be used for electron transfer that generates a transmembrane electrochemical gradient, e.g. components of the respiratory or photosynthetic electron transport chain. GO:0009054|GO:0009053 molecular_function owl:Class GO:0051098 biolink:NamedThing regulation of binding Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900984 biolink:NamedThing vindoline catabolic process The chemical reactions and pathways resulting in the breakdown of vindoline. tmpzr1t_l9r_go_relaxed.owl vindoline catabolism|vindoline degradation|vindoline breakdown yaf 2012-06-14T09:16:56Z biological_process owl:Class GO:0009822 biolink:NamedThing alkaloid catabolic process The chemical reactions and pathways resulting in the breakdown of alkaloids, nitrogen containing natural products not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases). tmpzr1t_l9r_go_relaxed.owl alkaloid degradation|alkaloid breakdown|alkaloid catabolism biological_process owl:Class GO:0140499 biolink:NamedThing negative regulation of mitotic spindle assembly checkpoint signaling Any process that stops, prevents, or reduces the frequency, rate or extent of negative regulation of mitotic spindle assembly checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19818 pg 2020-07-22T15:44:06Z biological_process owl:Class GO:0062033 biolink:NamedThing positive regulation of mitotic sister chromatid segregation Any process that starts or increases the frequency, rate or extent of sister chromatid segregation during mitosis. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-23T14:32:23Z biological_process owl:Class GO:1901105 biolink:NamedThing tetracenomycin C catabolic process The chemical reactions and pathways resulting in the breakdown of tetracenomycin C. tmpzr1t_l9r_go_relaxed.owl tetracenomycin C catabolism|tetracenomycin C degradation|tetracenomycin C breakdown yaf 2012-07-11T02:50:54Z biological_process owl:Class GO:1902759 biolink:NamedThing Mo(VI)-molybdopterin cytosine dinucleotide metabolic process The chemical reactions and pathways involving Mo(VI)-molybdopterin cytosine dinucleotide. tmpzr1t_l9r_go_relaxed.owl Mo(VI)-molybdopterin cytosine dinucleotide metabolism dph 2014-03-06T14:00:31Z biological_process owl:Class GO:0009117 biolink:NamedThing nucleotide metabolic process The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). tmpzr1t_l9r_go_relaxed.owl nucleotide metabolism biological_process owl:Class GO:0000828 biolink:NamedThing inositol hexakisphosphate kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate = ADP + diphospho-1D-myo-inositol-pentakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) is unknown. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855216|Reactome:R-HSA-1855207|Reactome:R-HSA-1855227 molecular_function owl:Class GO:0016301 biolink:NamedThing kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl phosphokinase activity Reactome:R-HSA-6788855|Reactome:R-HSA-6788867 Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. molecular_function owl:Class GO:0031978 biolink:NamedThing plastid thylakoid lumen The volume enclosed by a plastid thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031977 biolink:NamedThing thylakoid lumen The volume enclosed by a thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905675 biolink:NamedThing negative regulation of adaptive immune memory response Any process that stops, prevents or reduces the frequency, rate or extent of adaptive immune memory response. tmpzr1t_l9r_go_relaxed.owl inhibition of adaptive immune memory response|down regulation of adaptive immune memory response|down-regulation of adaptive immune memory response|downregulation of adaptive immune memory response tb 2016-11-11T22:24:41Z biological_process owl:Class GO:0002820 biolink:NamedThing negative regulation of adaptive immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of an adaptive immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of adaptive immune response|down regulation of adaptive immune response|down-regulation of adaptive immune response|downregulation of adaptive immune response biological_process owl:Class GO:2000913 biolink:NamedThing negative regulation of galactoglucomannan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of galactoglucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of galactoglucomannan catabolism tt 2011-07-29T07:51:41Z biological_process owl:Class GO:0006082 biolink:NamedThing organic acid metabolic process The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl organic acid metabolism biological_process owl:Class GO:1903952 biolink:NamedThing regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization Any process that modulates the frequency, rate or extent of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization nc 2015-02-24T10:32:06Z biological_process owl:Class GO:1905031 biolink:NamedThing regulation of membrane repolarization during cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of membrane repolarization during cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl rph 2016-03-07T10:24:34Z biological_process owl:Class GO:0033615 biolink:NamedThing mitochondrial proton-transporting ATP synthase complex assembly The aggregation, arrangement and bonding together of a proton-transporting ATP synthase in the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043461 biolink:NamedThing proton-transporting ATP synthase complex assembly The aggregation, arrangement and bonding together of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes. tmpzr1t_l9r_go_relaxed.owl F-type ATPase complex assembly biological_process owl:Class GO:1902261 biolink:NamedThing positive regulation of delayed rectifier potassium channel activity Any process that activates or increases the frequency, rate or extent of delayed rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl activation of delayed rectifier potassium channel activity|up regulation of delayed rectifier potassium channel activity|upregulation of delayed rectifier potassium channel activity|up-regulation of delayed rectifier potassium channel activity rl 2013-06-25T12:16:30Z biological_process owl:Class GO:1902259 biolink:NamedThing regulation of delayed rectifier potassium channel activity Any process that modulates the frequency, rate or extent of delayed rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl rl 2013-06-25T12:16:19Z biological_process owl:Class GO:0060168 biolink:NamedThing positive regulation of adenosine receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl positive regulation of adenosine receptor signalling pathway biological_process owl:Class GO:0045745 biolink:NamedThing positive regulation of G protein-coupled receptor signaling pathway Any process that activates or increases the frequency, rate or extent of G protein-coupled receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of G protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signalling pathway|positive regulation of GPCR protein signalling pathway|positive regulation of G protein coupled receptor protein signalling pathway|upregulation of G-protein coupled receptor protein signaling pathway|positive regulation of GPCR protein signaling pathway|positive regulation of G-protein-coupled receptor protein signaling pathway|up-regulation of G-protein coupled receptor protein signaling pathway|up regulation of G-protein coupled receptor protein signaling pathway|stimulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein-coupled receptor protein signalling pathway|activation of G-protein coupled receptor protein signaling pathway biological_process owl:Class GO:0042104 biolink:NamedThing positive regulation of activated T cell proliferation Any process that activates or increases the rate or extent of activated T cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of activated T-cell proliferation|upregulation of activated T cell proliferation|stimulation of activated T cell proliferation|positive regulation of activated T lymphocyte proliferation|positive regulation of activated T-lymphocyte proliferation|up-regulation of activated T cell proliferation|activation of activated T cell proliferation|up regulation of activated T cell proliferation biological_process owl:Class GO:0042102 biolink:NamedThing positive regulation of T cell proliferation Any process that activates or increases the rate or extent of T cell proliferation. tmpzr1t_l9r_go_relaxed.owl stimulation of T cell proliferation|up-regulation of T cell proliferation|positive regulation of T-lymphocyte proliferation|positive regulation of T lymphocyte proliferation|activation of T cell proliferation|upregulation of T cell proliferation|up regulation of T cell proliferation biological_process owl:Class GO:0080151 biolink:NamedThing positive regulation of salicylic acid mediated signaling pathway Any process that activates or increases the frequency, rate or extent of salicylic acid mediated signal transduction. tmpzr1t_l9r_go_relaxed.owl positive regulation of salicylic acid mediated signalling pathway dhl 2010-05-20T03:10:46Z biological_process owl:Class GO:2000031 biolink:NamedThing regulation of salicylic acid mediated signaling pathway Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of salicylic acid mediated signalling pathway tb 2010-08-05T11:32:24Z biological_process owl:Class GO:0009242 biolink:NamedThing colanic acid biosynthetic process The chemical reactions and pathways resulting in the formation of colanic acid, a capsular bacterial polysaccharide. tmpzr1t_l9r_go_relaxed.owl colanic acid formation|colanic acid synthesis|colanic acid anabolism|M antigen biosynthesis|colanic acid biosynthesis|M antigen biosynthetic process MetaCyc:COLANSYN-PWY biological_process owl:Class GO:0046377 biolink:NamedThing colanic acid metabolic process The chemical reactions and pathways involving colanic acid, a capsular bacterial polysaccharide composed of glucose, galactose, fucose and glucuronic acid residues. tmpzr1t_l9r_go_relaxed.owl colanic acid metabolism biological_process owl:Class GO:0099639 biolink:NamedThing neurotransmitter receptor transport, endosome to plasma membrane The directed movement of neurotransmitter receptor from the endosome to the plasma membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098877 biolink:NamedThing neurotransmitter receptor transport to plasma membrane The directed movement of neurotransmitter receptor to the plasma membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046086 biolink:NamedThing adenosine biosynthetic process The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. tmpzr1t_l9r_go_relaxed.owl adenosine anabolism|adenosine biosynthesis|adenosine formation|adenosine synthesis biological_process owl:Class GO:0046129 biolink:NamedThing purine ribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside formation|purine ribonucleoside synthesis|purine ribonucleoside anabolism|purine ribonucleoside biosynthesis biological_process owl:Class GO:1903250 biolink:NamedThing positive regulation of citrulline biosynthetic process Any process that activates or increases the frequency, rate or extent of citrulline biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of citrulline synthesis|upregulation of citrulline synthesis|up-regulation of citrulline formation|activation of citrulline biosynthetic process|up-regulation of citrulline biosynthetic process|up regulation of citrulline synthesis|upregulation of citrulline biosynthetic process|positive regulation of citrulline biosynthesis|positive regulation of citrulline synthesis|activation of citrulline formation|up-regulation of citrulline synthesis|upregulation of citrulline formation|up regulation of citrulline formation|up regulation of citrulline biosynthetic process|up-regulation of citrulline anabolism|up-regulation of citrulline biosynthesis|positive regulation of citrulline formation|up regulation of citrulline anabolism|upregulation of citrulline anabolism|upregulation of citrulline biosynthesis|up regulation of citrulline biosynthesis|positive regulation of citrulline anabolism|activation of citrulline anabolism|activation of citrulline biosynthesis rl 2014-08-04T15:24:52Z biological_process owl:Class GO:0010645 biolink:NamedThing regulation of cell communication by chemical coupling Any process that modulates the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010646 biolink:NamedThing regulation of cell communication Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102883 biolink:NamedThing (+)-beta-chamigrene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (+)-beta-chamigrene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:30379|EC:4.2.3.78|MetaCyc:RXN-8424 molecular_function owl:Class GO:0016838 biolink:NamedThing carbon-oxygen lyase activity, acting on phosphates Catalysis of the cleavage of a carbon-oxygen bond by elimination of a phosphate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.- molecular_function owl:Class GO:1990742 biolink:NamedThing microvesicle An extracellular vesicle released from the plasma membrane and ranging in size from about 100 nm to 1000 nm. tmpzr1t_l9r_go_relaxed.owl ectosome|extracellular microvesicle|shedding vesicle pr 2015-05-13T13:44:52Z cellular_component owl:Class GO:1903561 biolink:NamedThing extracellular vesicle Any vesicle that is part of the extracellular region. tmpzr1t_l9r_go_relaxed.owl microparticle jl 2014-10-22T14:26:11Z cellular_component owl:Class GO:0060062 biolink:NamedThing Spemann organizer formation at the dorsal lip of the blastopore Formation of the specialized region at the dorsal lip of the blatopore of the embryo that acts as the main signaling center establishing the vertebrate body plan. tmpzr1t_l9r_go_relaxed.owl Spemann's organizer formation at the dorsal lip of the blastopore|Spemann-Mangold organizer formation at the dorsal lip of the blastopore Occurs in amphibia, cephalochordates, cyclostomes and cartilaginous fish. biological_process owl:Class GO:0060061 biolink:NamedThing Spemann organizer formation Formation of the specialized region on the dorsalmost side of the embryo that acts as the main signaling center establishing the vertebrate body plan. tmpzr1t_l9r_go_relaxed.owl Spemann-Mangold organizer formation|Spemann's organizer formation biological_process owl:Class GO:1904077 biolink:NamedThing negative regulation of estrogen biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of estrogen biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of estrogen synthesis|negative regulation of estrogen formation|down regulation of estrogen formation|down regulation of estrogen biosynthetic process|down-regulation of oestrogen biosynthetic process|negative regulation of oestrogen biosynthetic process|downregulation of estrogen anabolism|inhibition of estrogen anabolism|downregulation of estrogen biosynthetic process|inhibition of estrogen formation|downregulation of oestrogen biosynthetic process|down-regulation of estrogen biosynthetic process|negative regulation of estrogen synthesis|negative regulation of estrogen anabolism|inhibition of estrogen biosynthesis|down regulation of oestrogen biosynthesis|down regulation of estrogen synthesis|down regulation of oestrogen biosynthetic process|negative regulation of estrogen biosynthesis|inhibition of estrogen biosynthetic process|down-regulation of estrogen synthesis|downregulation of estrogen biosynthesis|downregulation of estrogen synthesis|inhibition of oestrogen biosynthesis|negative regulation of oestrogen biosynthesis|down-regulation of oestrogen biosynthesis|down-regulation of estrogen formation|down regulation of estrogen biosynthesis|down-regulation of estrogen biosynthesis|down regulation of estrogen anabolism|down-regulation of estrogen anabolism|downregulation of oestrogen biosynthesis|downregulation of estrogen formation|inhibition of oestrogen biosynthetic process tb 2015-03-20T16:56:20Z biological_process owl:Class GO:1904076 biolink:NamedThing regulation of estrogen biosynthetic process Any process that modulates the frequency, rate or extent of estrogen biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of estrogen synthesis|regulation of oestrogen biosynthesis|regulation of estrogen formation|regulation of oestrogen biosynthetic process|regulation of estrogen biosynthesis|regulation of estrogen anabolism tb 2015-03-20T16:56:14Z biological_process owl:Class GO:0140492 biolink:NamedThing metal-dependent deubiquitinase activity Catalysis of the metal-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. tmpzr1t_l9r_go_relaxed.owl metal-dependent ubiquitinyl-like hydrolase activity|metal-dependent ubiquitin-like hydrolase activity https://github.com/geneontology/go-ontology/issues/17398 pg 2020-07-01T13:14:00Z molecular_function owl:Class GO:0101005 biolink:NamedThing deubiquitinase activity Catalysis of the hydrolysis of ubiquitin from proteins. tmpzr1t_l9r_go_relaxed.owl ubiquitinyl hydrolase activity https://github.com/geneontology/go-ontology/issues/17398 Reactome:R-HSA-9674127 There are two main classes of deubiquitinating enzymes: cysteine proteases (i.e., thiol dependent) and metalloproteases. mec 2016-02-08T09:39:38Z GO:1904265 molecular_function owl:Class GO:0031762 biolink:NamedThing follicle-stimulating hormone receptor binding Binding to a follicle-stimulating hormone receptor. tmpzr1t_l9r_go_relaxed.owl FSH receptor binding|follicle stimulating hormone receptor binding|follicle stimulating hormone receptor ligand molecular_function owl:Class GO:0010395 biolink:NamedThing rhamnogalacturonan I metabolic process The chemical reactions and pathways involving rhamnogalacturonan I (RGI), a branched pectin with a backbone of alternating alpha-(1->2)-linked rhamnose and alpha-(1->4)-linked D-galacturonic acid residues that carries neutral side-chains of predominantly beta-(1->4)-D-galactose and/or alpha-(1->5)-L-arabinose residues attached to the rhamnose residues of the RGI backbone. tmpzr1t_l9r_go_relaxed.owl RGI metabolism|rhamnogalacturonan I metabolism biological_process owl:Class GO:0010383 biolink:NamedThing cell wall polysaccharide metabolic process The chemical reactions and pathways involving cell wall polysaccharides. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050747 biolink:NamedThing positive regulation of lipoprotein metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl upregulation of lipoprotein metabolic process|positive regulation of lipoprotein metabolism|up regulation of lipoprotein metabolic process|up-regulation of lipoprotein metabolic process|activation of lipoprotein metabolic process|stimulation of lipoprotein metabolic process biological_process owl:Class GO:1902039 biolink:NamedThing negative regulation of seed dormancy process Any process that stops, prevents or reduces the frequency, rate or extent of seed dormancy process. tmpzr1t_l9r_go_relaxed.owl inhibition of seed dormancy process|inhibition of seed dormancy|downregulation of seed dormancy|down regulation of seed dormancy process|negative regulation of seed dormancy|down-regulation of seed dormancy process|down regulation of seed dormancy|down-regulation of seed dormancy|downregulation of seed dormancy process tb 2013-04-02T22:13:15Z biological_process owl:Class GO:1903607 biolink:NamedThing cytochrome c biosynthetic process The chemical reactions and pathways resulting in the formation of cytochrome c. tmpzr1t_l9r_go_relaxed.owl cytochrome c synthesis|cytochrome c formation|cytochrome c anabolism|cytochrome c biosynthesis dph 2014-11-13T20:01:35Z biological_process owl:Class GO:1903605 biolink:NamedThing cytochrome biosynthetic process The chemical reactions and pathways resulting in the formation of a cytochrome. tmpzr1t_l9r_go_relaxed.owl cytochrome formation|cytochrome synthesis|cytochrome biosynthesis|cytochrome anabolism dph 2014-11-13T20:01:18Z biological_process owl:Class GO:0099079 biolink:NamedThing actin body An amorphous cytoskeletal structure consisting of aggregated actin filaments and associated proteins (including fibrin and capping protein) in which there is little or no actin filament turnover. In yeast (S. pombe and S. cerevisiae) these are found only in quiescent cells and are thought to serve as a reserve store of actin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905245 biolink:NamedThing regulation of aspartic-type peptidase activity Any process that modulates the frequency, rate or extent of aspartic-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl jl 2016-06-09T11:55:39Z biological_process owl:Class GO:0052547 biolink:NamedThing regulation of peptidase activity Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl peptidase regulator activity biological_process owl:Class GO:0000100 biolink:NamedThing S-methylmethionine transmembrane transporter activity Enables the transfer of S-methylmethionine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl S-methylmethionine permease activity|S-methylmethionine transporter activity GO:0015178 molecular_function owl:Class GO:1901682 biolink:NamedThing sulfur compound transmembrane transporter activity Enables the transfer of a sulfur compound from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl sulfur molecular entity transmembrane transporter activity pr 2012-11-26T20:45:29Z molecular_function owl:Class GO:0001574 biolink:NamedThing ganglioside biosynthetic process The chemical reactions and pathways resulting in the formation of ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues. tmpzr1t_l9r_go_relaxed.owl ganglioside synthesis|ganglioside anabolism|ganglioside formation|ganglioside biosynthesis biological_process owl:Class GO:0046513 biolink:NamedThing ceramide biosynthetic process The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid. tmpzr1t_l9r_go_relaxed.owl ceramide biosynthesis|ceramide synthesis|ceramide anabolism|ceramide formation biological_process owl:Class GO:0002246 biolink:NamedThing wound healing involved in inflammatory response The series of events that restore integrity to damaged tissue that contribute to an inflammatory response. tmpzr1t_l9r_go_relaxed.owl healing during inflammatory response|inflammatory response wound healing biological_process owl:Class GO:0042060 biolink:NamedThing wound healing The series of events that restore integrity to a damaged tissue, following an injury. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Wound_healing biological_process owl:Class GO:1903599 biolink:NamedThing positive regulation of autophagy of mitochondrion Any process that activates or increases the frequency, rate or extent of mitochondrion degradation by autophagy. tmpzr1t_l9r_go_relaxed.owl upregulation of mitophagy|positive regulation of mitochondrial degradation|activation of mitochondrion degradation|up-regulation of mitophagy|up regulation of mitochondrion degradation|up regulation of mitophagy|upregulation of mitochondrion degradation|up-regulation of mitochondrion degradation|activation of mitophagy An example of this AMBRA1 - human (Q9C0C7) in PMID:21753002 inferred from direct assay pad 2014-11-10T14:25:53Z biological_process owl:Class GO:0038118 biolink:NamedThing C-C chemokine receptor CCR7 signaling pathway A series of molecular signals initiated by a the C-C chemokine type 7 receptor on the surface of a cell binding to one of it's physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCR7 signaling pathway|C-C chemokine receptor CCR7 signalling pathway This term was created to show the binding of cytokines to multiple receptor types, and vice-versa. Known agonists of chemokine receptor type 7 (CCR7) are C-C chemokines CCL19 and CCL21. Consider instead annotating to one of the child terms 'CCL19-activated CCR7 signaling pathway ; GO:0038119' and/or 'CCL21-activated CCR7 signaling pathway ; GO:0038120'. bf 2012-03-22T11:43:57Z biological_process owl:Class GO:0070098 biolink:NamedThing chemokine-mediated signaling pathway A series of molecular signals initiated by the binding of a chemokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl chemokine-mediated signalling pathway biological_process owl:Class GO:0008652 biolink:NamedThing cellular amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl amino acid biosynthetic process|cellular amino acid anabolism|cellular amino acid biosynthesis|cellular amino acid synthesis|cellular amino acid formation Wikipedia:Amino_acid_synthesis biological_process owl:Class GO:0046394 biolink:NamedThing carboxylic acid biosynthetic process The chemical reactions and pathways resulting in the formation of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl carboxylic acid synthesis|carboxylic acid formation|carboxylic acid biosynthesis|carboxylic acid anabolism biological_process owl:Class GO:0010536 biolink:NamedThing positive regulation of activation of Janus kinase activity Any process that increases the frequency or rate of activation of JAK (Janus Activated Kinase) protein. The activation of JAK protein is the process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it. tmpzr1t_l9r_go_relaxed.owl positive regulation of tyrosine phosphorylation of JAK1 protein|positive regulation of activation of JAK protein|positive regulation of activation of JAK1 protein|positive regulation of activation of JAK1 kinase activity|positive regulation of tyrosine phosphorylation of JAK2 protein|positive regulation of activation of JAK2 kinase activity|positive regulation of tyrosine phosphorylation of JAK protein|positive regulation of activation of JAK2 protein GO:0010537|GO:0010535 biological_process owl:Class GO:0075138 biolink:NamedThing response to host oxygen tension environment Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting oxygen tension in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host oxygen tension environment Note that this term is used to annotate gene products of the symbiont. biological_process owl:Class GO:0075136 biolink:NamedThing response to host Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host Note that this term is used to annotate gene products of the symbiont. biological_process owl:Class GO:0090339 biolink:NamedThing negative regulation of formin-nucleated actin cable assembly Any process that decreases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:26:31Z biological_process owl:Class GO:1905661 biolink:NamedThing regulation of telomerase RNA reverse transcriptase activity Any process that modulates the frequency, rate or extent of telomerase RNA reverse transcriptase activity. tmpzr1t_l9r_go_relaxed.owl regulation of telomerase, catalyst nc 2016-11-09T16:55:20Z biological_process owl:Class GO:0051972 biolink:NamedThing regulation of telomerase activity Any process that modulates the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Telomerases catalyze extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence. tmpzr1t_l9r_go_relaxed.owl telomerase regulator biological_process owl:Class GO:0043799 biolink:NamedThing glycine oxidase activity Catalysis of the reactions: (1) glycine + H2O + O2 = glyoxylate + NH3 + hydrogen peroxide; (2) D-alanine + H2O + O2 = pyruvate + NH3 + hydrogen peroxide; (3) sarcosine + H2O + O2 = glyoxylate + methylamine + hydrogen peroxide; (4) N-ethylglycine + H2O + O2 = glyoxylate + ethylamine + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl glycine:oxygen oxidoreductase (deaminating) MetaCyc:1.4.3.19-RXN|MetaCyc:RXN-8672|EC:1.4.3.19|MetaCyc:RXN-8674|MetaCyc:RXN-8673 molecular_function owl:Class GO:0016641 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.4.3.- molecular_function owl:Class GO:0075015 biolink:NamedThing formation of infection structure The formation of a symbiont structure that serves to infect its host organism. It includes physiological, developmental, and morphological changes of the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation of host penetration structure|formation by symbiont of infection structure on or near host|formation of infection structure on or near host|formation of host infection structure https://github.com/geneontology/go-ontology/issues/19014|https://github.com/geneontology/go-ontology/issues/20472 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products of the symbiont involved in this process. biological_process owl:Class GO:0035371 biolink:NamedThing microtubule plus-end The growing (plus) end of a microtubule. In vitro, microtubules polymerize more quickly at the plus end than at the minus end. In vivo, microtubule growth occurs only at the plus end, and the plus end switches between periods of growth and shortening, a behavior known as dynamic instability. tmpzr1t_l9r_go_relaxed.owl growing microtubule plus end|microtubule plus end bf 2010-03-11T10:55:00Z cellular_component owl:Class GO:1990752 biolink:NamedThing microtubule end Any end of a microtubule. Microtubule ends differ in that the so-called microtubule plus-end is the one that preferentially grows by polymerization, with respect to the minus-end. tmpzr1t_l9r_go_relaxed.owl This term should be used when it is not possible to distinguish between the two microtubule ends, e.g. during image annotation. Whenever possible, please annotate to one of the more specific children GO:0035371 'microtubule plus-end' or GO:0036449 'microtubule minus-end'. pr 2015-05-25T12:50:31Z cellular_component owl:Class GO:1902158 biolink:NamedThing positive regulation of response to G2 DNA damage checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to G2 DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of G2/M transition DNA damage checkpoint effector process|up-regulation of response to signal involved in G2/M transition DNA damage checkpoint|up regulation of G2/M transition DNA damage checkpoint effector process|activation of response to G2 DNA damage checkpoint signaling|up regulation of response to signal involved in G2/M transition DNA damage checkpoint|upregulation of response to G2 DNA damage checkpoint signaling|up regulation of response to G2 DNA damage checkpoint signaling|upregulation of G2/M transition DNA damage checkpoint effector process|up-regulation of G2/M transition DNA damage checkpoint effector process|upregulation of response to signal involved in G2/M transition DNA damage checkpoint|positive regulation of response to signal involved in G2/M transition DNA damage checkpoint|up-regulation of response to G2 DNA damage checkpoint signaling|activation of response to signal involved in G2/M transition DNA damage checkpoint|activation of G2/M transition DNA damage checkpoint effector process jl 2013-05-21T15:45:10Z biological_process owl:Class GO:1900833 biolink:NamedThing D-leucine biosynthetic process The chemical reactions and pathways resulting in the formation of D-leucine. tmpzr1t_l9r_go_relaxed.owl D-leucine anabolism|D-leucine biosynthesis|D-leucine formation|D-leucine synthesis se 2012-06-06T09:37:47Z biological_process owl:Class GO:0009098 biolink:NamedThing leucine biosynthetic process The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl leucine formation|leucine anabolism|leucine biosynthesis|leucine synthesis MetaCyc:LEUSYN-PWY biological_process owl:Class GO:0035172 biolink:NamedThing hemocyte proliferation The multiplication or reproduction of hemocytes, resulting in the expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. tmpzr1t_l9r_go_relaxed.owl arthropod blood cell proliferation biological_process owl:Class GO:0090280 biolink:NamedThing positive regulation of calcium ion import Any process that increases the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl positive regulation of transmembrane calcium influx tb 2010-02-08T05:11:20Z biological_process owl:Class GO:0051928 biolink:NamedThing positive regulation of calcium ion transport Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of calcium ion transport|positive regulation of calcium transport|up regulation of calcium ion transport|upregulation of calcium ion transport|up-regulation of calcium ion transport|activation of calcium ion transport biological_process owl:Class GO:0006101 biolink:NamedThing citrate metabolic process The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl citrate metabolism biological_process owl:Class GO:0032939 biolink:NamedThing positive regulation of translation in response to oxidative stress Any process that activates or increases the frequency, rate or extent of translation as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl upregulation of translation in response to oxidative stress|stimulation of translation in response to oxidative stress|up regulation of translation in response to oxidative stress|activation of translation in response to oxidative stress|up-regulation of translation in response to oxidative stress biological_process owl:Class GO:0032056 biolink:NamedThing positive regulation of translation in response to stress Any process that activates or increases the frequency, rate or extent of translation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl up-regulation of translation in response to stress|up regulation of translation in response to stress|activation of translation in response to stress|upregulation of translation in response to stress|stimulation of translation in response to stress biological_process owl:Class GO:1902021 biolink:NamedThing regulation of bacterial-type flagellum-dependent cell motility Any process that modulates the frequency, rate or extent of bacterial-type flagellum-dependent cell motility. tmpzr1t_l9r_go_relaxed.owl regulation of bacterial-type flagellar cell motility|regulation of flagellin-based flagellar cell motility|regulation of bacterial-type flagellum cell motility jl 2013-03-27T14:42:50Z biological_process owl:Class GO:2000145 biolink:NamedThing regulation of cell motility Any process that modulates the frequency, rate or extent of cell motility. tmpzr1t_l9r_go_relaxed.owl regulation of movement of a cell|regulation of cell movement|regulation of cell locomotion mah 2010-10-01T09:41:21Z biological_process owl:Class GO:0009013 biolink:NamedThing succinate-semialdehyde dehydrogenase [NAD(P)+] activity Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O = succinate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl succinate-semialdehyde:NAD(P)+ oxidoreductase activity|succinate semialdehyde dehydrogenase (nicotinamide adenine dinucleotide (phosphate)) UM-BBD_reactionID:r0371|EC:1.2.1.16|MetaCyc:SUCCSEMIALDDEHYDROG-RXN molecular_function owl:Class GO:0016620 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.-|Reactome:R-HSA-1222583 molecular_function owl:Class GO:0090173 biolink:NamedThing regulation of synaptonemal complex assembly Any process that modulates the frequency, rate or extent of synaptonemal complex assembly. Synaptonemal complex assembly is the cell cycle process in which the synaptonemal complex, a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination, is formed. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-11T11:40:36Z biological_process owl:Class GO:0010564 biolink:NamedThing regulation of cell cycle process Any process that modulates a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044195 biolink:NamedThing nucleoplasmic reticulum Long, dynamic tubular channels, formed by invagination of the nuclear envelope, that extend deep into the nucleoplasm. The channels have an underlying lamina and are implicated in functioning in signaling and transport. tmpzr1t_l9r_go_relaxed.owl nuclear channels jl 2009-10-20T02:24:09Z cellular_component owl:Class GO:0060768 biolink:NamedThing regulation of epithelial cell proliferation involved in prostate gland development Any process that modulates the rate, frequency or extent of epithelial cell proliferation that contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-08T07:34:56Z biological_process owl:Class GO:1990186 biolink:NamedThing regulation of lymphatic vessel size Any process that modulates the size of lymphatic vessels. tmpzr1t_l9r_go_relaxed.owl regulation of collecting lymphatic vessel size sl 2013-09-11T15:41:16Z biological_process owl:Class GO:1990183 biolink:NamedThing lymphatic vascular process in circulatory system A circulatory process that occurs at the level of the lymphatic vasculature. tmpzr1t_l9r_go_relaxed.owl sl 2013-09-10T22:26:40Z biological_process owl:Class GO:0080079 biolink:NamedThing cellobiose glucosidase activity Catalysis of the reaction: cellobiose + H2O = 2 D-glucose. tmpzr1t_l9r_go_relaxed.owl cellobiose glucohydrolase activity MetaCyc:RXN-10773 dhl 2009-04-14T04:07:16Z molecular_function owl:Class GO:0008422 biolink:NamedThing beta-glucosidase activity Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl beta-D-glucoside glucohydrolase activity|cellobiase activity|primeverosidase activity|emulsin|beta-1,6-glucosidase activity|beta-glucoside glucohydrolase activity|aryl-beta-glucosidase activity|cytokine beta-glucosidase activity|salicilinase activity|gentiobiase activity|limarase activity|amygdalase activity|gentobiase activity|arbutinase activity|amygdalinase|p-nitrophenyl beta-glucosidase activity|beta-D-glucosidase activity|elaterase activity MetaCyc:3.2.1.21-RXN|EC:3.2.1.21 GO:0016983 molecular_function owl:Class GO:0035066 biolink:NamedThing positive regulation of histone acetylation Any process that activates or increases the frequency, rate or extent of the addition of an acetyl group to a histone protein. tmpzr1t_l9r_go_relaxed.owl activation of histone acetylation|up-regulation of histone acetylation|upregulation of histone acetylation|stimulation of histone acetylation|up regulation of histone acetylation biological_process owl:Class GO:0045067 biolink:NamedThing positive extrathymic T cell selection The process of sparing extrathymically maturing T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death. tmpzr1t_l9r_go_relaxed.owl positive extrathymic T-cell selection|positive extrathymic T-lymphocyte selection|positive extrathymic T lymphocyte selection biological_process owl:Class GO:0045062 biolink:NamedThing extrathymic T cell selection The process of T cell selection that occurs in extrathymic locations, often resulting T cells of distinct specificities from those selected in the thymus. tmpzr1t_l9r_go_relaxed.owl extrathymic T-lymphocyte selection|extrathymic T-cell selection|extrathymic T lymphocyte selection biological_process owl:Class GO:0035809 biolink:NamedThing regulation of urine volume Any process that modulates the amount of urine excreted from the body over a unit of time. tmpzr1t_l9r_go_relaxed.owl regulation of urinary volume|regulation of urine flow bf 2011-04-20T01:17:38Z biological_process owl:Class GO:0003014 biolink:NamedThing renal system process A organ system process carried out by any of the organs or tissues of the renal system. The renal system maintains fluid balance, and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels; in other species, the renal system may comprise related structures (e.g., nephrocytes and malpighian tubules in Drosophila). tmpzr1t_l9r_go_relaxed.owl kidney system process|excretory system process biological_process owl:Class GO:1903399 biolink:NamedThing positive regulation of m7G(5')pppN diphosphatase activity Any process that activates or increases the frequency, rate or extent of m7G(5')pppN diphosphatase activity. tmpzr1t_l9r_go_relaxed.owl activation of m7G(5')pppN pyrophosphatase activity|up regulation of m7G(5')pppN pyrophosphatase activity|upregulation of decapase activity|up regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|up-regulation of M(7)G(5')pppN pyrophosphatase activity|activation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|up-regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|upregulation of m7G(5')pppN pyrophosphatase activity|up-regulation of m7G(5')pppN pyrophosphatase activity|upregulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|activation of m7G(5')pppN diphosphatase activity|upregulation of M(7)G(5')pppN pyrophosphatase activity|upregulation of m7G(5')pppN diphosphatase activity|up-regulation of m7G(5')pppN diphosphatase activity|positive regulation of decapase activity|activation of M(7)G(5')pppN pyrophosphatase activity|positive regulation of m7G(5')pppN pyrophosphatase activity|activation of decapase activity|positive regulation of M(7)G(5')pppN pyrophosphatase activity|up regulation of M(7)G(5')pppN pyrophosphatase activity|up regulation of decapase activity|positive regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|up regulation of m7G(5')pppN diphosphatase activity|up-regulation of decapase activity mah 2014-09-01T10:16:49Z biological_process owl:Class GO:1990559 biolink:NamedThing mitochondrial coenzyme A transmembrane transport The process in which coenzyme A is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:58:26Z biological_process owl:Class GO:1990542 biolink:NamedThing mitochondrial transmembrane transport The process in which a solute is transported from one side of a membrane to the other into, out of or within a mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:19:21Z biological_process owl:Class GO:0031942 biolink:NamedThing i-AAA complex Protease complex of the mitochondrial inner membrane whose catalytic residues lie on the intermembrane space side of the inner membrane; involved in mitochondrial protein turnover. Contains a subunit belonging to the AAA family of ATP-dependent metalloproteases. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098800 biolink:NamedThing inner mitochondrial membrane protein complex Any protein complex that is part of the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031846 biolink:NamedThing neurotensin receptor binding Binding to a neurotensin receptor. tmpzr1t_l9r_go_relaxed.owl neurotensin receptor ligand molecular_function owl:Class GO:0071855 biolink:NamedThing neuropeptide receptor binding Binding to a neuropeptide receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:21:43Z molecular_function owl:Class GO:0034145 biolink:NamedThing positive regulation of toll-like receptor 4 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 4 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 4 signalling pathway|positive regulation of TLR4 signaling pathway biological_process owl:Class GO:0047125 biolink:NamedThing delta1-piperideine-2-carboxylate reductase activity Catalysis of the reaction: NADP+ + L-pipecolate = NADPH + delta1-piperideine-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl delta 1-piperideine-2-carboxylate reductase activity|1,2-didehydropipecolic reductase activity|P2C reductase activity|D1-piperideine-2-carboxylate reductase activity|1,2-didehydropipecolate reductase activity|L-pipecolate:NADP+ 2-oxidoreductase activity RHEA:12524|EC:1.5.1.21|MetaCyc:RXN-8166 molecular_function owl:Class GO:0016646 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.5.1.- molecular_function owl:Class GO:0045460 biolink:NamedThing sterigmatocystin metabolic process The chemical reactions and pathways involving sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds. tmpzr1t_l9r_go_relaxed.owl sterigmatocystin metabolism biological_process owl:Class GO:0006725 biolink:NamedThing cellular aromatic compound metabolic process The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl aromatic hydrocarbon metabolic process|aromatic compound metabolism|aromatic hydrocarbon metabolism biological_process owl:Class GO:0000373 biolink:NamedThing Group II intron splicing The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat. tmpzr1t_l9r_go_relaxed.owl mRNA splicing Note that Group II introns are known to be found in a number of places: rRNA, mRNA, and tRNA in organelles of fungi, plants, and protists; and mRNA of bacteria. biological_process owl:Class GO:0000377 biolink:NamedThing RNA splicing, via transesterification reactions with bulged adenosine as nucleophile Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. tmpzr1t_l9r_go_relaxed.owl lariat RNA biosynthesis|lariat RNA formation biological_process owl:Class GO:0006769 biolink:NamedThing nicotinamide metabolic process The chemical reactions and pathways involving nicotinamide, pyridine-3-carboxamide, the amide of nicotinic acid. It is a member of the B complex of vitamins and occurs widely in living organisms. tmpzr1t_l9r_go_relaxed.owl nicotinamide metabolism|vitamin B3 metabolism|niacin metabolism|niacin metabolic process|vitamin B3 metabolic process MetaCyc:PWY-5083 biological_process owl:Class GO:0009820 biolink:NamedThing alkaloid metabolic process The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases). tmpzr1t_l9r_go_relaxed.owl alkaloid metabolism biological_process owl:Class GO:0030913 biolink:NamedThing paranodal junction assembly Formation of the junction between an axon and the glial cell that forms the myelin sheath. Paranodal junctions form at each paranode, i.e. at the ends of the unmyelinated nodes of Ranvier. tmpzr1t_l9r_go_relaxed.owl paranodal axoglial junction formation|paranodal junction formation|paranodal junction biosynthesis biological_process owl:Class GO:0010927 biolink:NamedThing cellular component assembly involved in morphogenesis The cellular component assembly that is part of the initial shaping of the component during its developmental progression. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038120 biolink:NamedThing CCL21-activated CCR7 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL21 to a C-C chemokine type 7 receptor (CCR7) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL21-activated CCR7 signalling pathway bf 2012-03-22T11:47:24Z biological_process owl:Class GO:0038116 biolink:NamedThing chemokine (C-C motif) ligand 21 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL21 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL21-mediated signaling pathway|C-C chemokine receptor type 7 signaling pathway|chemokine (C-C motif) ligand 21 signalling pathway The C-C chemokine CCL21 s a known agonist of the chemokine receptor type 7 (CCR7). Consider instead annotating to the child term 'CCL21-activated CCR7 signaling pathway ; GO:0038120'. bf 2012-03-22T11:30:47Z biological_process owl:Class GO:0046121 biolink:NamedThing deoxyribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside degradation|deoxyribonucleoside catabolism|deoxyribonucleoside breakdown biological_process owl:Class GO:0009120 biolink:NamedThing deoxyribonucleoside metabolic process The chemical reactions and pathways involving any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside metabolism biological_process owl:Class GO:0015941 biolink:NamedThing pantothenate catabolic process The chemical reactions and pathways resulting in the breakdown of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. tmpzr1t_l9r_go_relaxed.owl vitamin B5 catabolic process|pantothenate catabolism|pantothenate breakdown|pantothenate degradation|vitamin B5 catabolism biological_process owl:Class GO:1903466 biolink:NamedThing regulation of mitotic DNA replication initiation Any process that modulates the frequency, rate or extent of DNA replication initiation involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl regulation of DNA replication initiation involved in mitotic cell cycle DNA replication vw 2014-09-23T13:38:49Z biological_process owl:Class GO:1903463 biolink:NamedThing regulation of mitotic cell cycle DNA replication Any process that modulates the frequency, rate or extent of mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl regulation of DNA replication involved in S phase involved in mitotic cell cycle|regulation of DNA replication involved in S-phase involved in mitotic cell cycle|regulation of mitotic nuclear cell cycle DNA replication|regulation of DNA replication during S phase involved in mitotic cell cycle|regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle vw 2014-09-23T13:38:25Z biological_process owl:Class GO:1905876 biolink:NamedThing positive regulation of postsynaptic density organization Any process that activates or increases the frequency, rate or extent of postsynaptic density organization. tmpzr1t_l9r_go_relaxed.owl up regulation of postsynaptic density organisation|positive regulation of post synaptic density organization|activation of PSD organization|up regulation of post-synaptic density organization|activation of postsynaptic density organisation|activation of post synaptic density organization|up-regulation of postsynaptic density organisation|up-regulation of postsynaptic density organization|up regulation of post synaptic density organization|up-regulation of post-synaptic density organization|upregulation of post synaptic density organization|upregulation of postsynaptic density organization|activation of postsynaptic density organization|positive regulation of PSD organization|upregulation of PSD organization|up-regulation of PSD organization|up regulation of postsynaptic density organization|up regulation of PSD organization|activation of post-synaptic density organization|positive regulation of post-synaptic density organization|up-regulation of post synaptic density organization|upregulation of post-synaptic density organization|positive regulation of postsynaptic density organisation|upregulation of postsynaptic density organisation sl 2017-01-27T19:53:50Z biological_process owl:Class GO:0006937 biolink:NamedThing regulation of muscle contraction Any process that modulates the frequency, rate or extent of muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042919 biolink:NamedThing benzoate transport The directed movement of benzoate, the anion of benzoic acid (benzenecarboxylic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015849 biolink:NamedThing organic acid transport The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047463 biolink:NamedThing 2-aminohexano-6-lactam racemase activity Catalysis of the reaction: L-2-aminohexano-6-lactam = D-2-aminohexano-6-lactam. tmpzr1t_l9r_go_relaxed.owl alpha-amino-epsilon-caprolactam racemase activity|2-amino-hexano-6-lactam racemase activity RHEA:14813|EC:5.1.1.15|KEGG_REACTION:R04736|MetaCyc:5.1.1.15-RXN molecular_function owl:Class GO:0016855 biolink:NamedThing racemase and epimerase activity, acting on amino acids and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid. tmpzr1t_l9r_go_relaxed.owl EC:5.1.1.- molecular_function owl:Class GO:0044731 biolink:NamedThing Ost-alpha/Ost-beta complex A heterodimeric protein complex composed of Ost-alpha/SLC51A and Ost-beta/SLC51B subunits and involved in bile acid transport activity. tmpzr1t_l9r_go_relaxed.owl (Ost)2 complex|Ost alpha-Ost beta complex|SLC51 complex jl 2012-11-06T13:42:06Z cellular_component owl:Class GO:0098797 biolink:NamedThing plasma membrane protein complex Any protein complex that is part of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900492 biolink:NamedThing negative regulation of [4Fe-4S] cluster assembly Any process that stops, prevents or reduces the frequency, rate or extent of [4Fe-4S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of 4Fe-4S cluster assembly|down regulation of [4Fe-4S] cluster assembly|inhibition of 4Fe-4S cluster assembly|downregulation of [4Fe-4S] cluster biosynthetic process|inhibition of [4Fe-4S] cluster biosynthetic process|down-regulation of [4Fe-4S] cluster assembly|down regulation of [4Fe-4S] cluster biosynthetic process|negative regulation of [4Fe-4S] cluster biosynthetic process|inhibition of [4Fe-4S] cluster assembly|negative regulation of 4Fe-4S cluster assembly|down-regulation of 4Fe-4S cluster assembly|down regulation of 4Fe-4S cluster assembly|down-regulation of [4Fe-4S] cluster biosynthetic process|downregulation of [4Fe-4S] cluster assembly tt 2012-05-02T03:49:00Z biological_process owl:Class GO:1903330 biolink:NamedThing negative regulation of iron-sulfur cluster assembly Any process that stops, prevents or reduces the frequency, rate or extent of iron-sulfur cluster assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of iron-sulfur cluster assembly|down regulation of iron-sulphur cluster assembly|inhibition of iron-sulphur cluster assembly|inhibition of iron-sulfur cluster biosynthesis|down regulation of iron-sulfur cluster assembly|down regulation of iron-sulfur cluster biosynthesis|downregulation of iron-sulphur cluster assembly|negative regulation of iron-sulfur cluster biosynthesis|down-regulation of iron-sulfur cluster biosynthesis|inhibition of iron-sulfur cluster assembly|down-regulation of iron-sulfur cluster assembly|downregulation of iron-sulfur cluster biosynthesis|down-regulation of iron-sulphur cluster assembly|negative regulation of iron-sulphur cluster assembly vw 2014-08-18T13:12:50Z biological_process owl:Class GO:0016165 biolink:NamedThing linoleate 13S-lipoxygenase activity Catalysis of the reaction: linoleate + O2 = (9Z,11E)-(13S)-13-hydroperoxyoctadeca-9,11-dienoate. tmpzr1t_l9r_go_relaxed.owl lionoleate:O2 oxidoreductase activity|fat oxidase activity|lipoxygenase activity|carotene oxidase activity|linoleate:oxygen 13-oxidoreductase activity|lipoperoxidase activity|lipoxidase activity|lipoxydase activity RHEA:22780|EC:1.13.11.12|MetaCyc:LIPOXYGENASE-RXN molecular_function owl:Class GO:0019299 biolink:NamedThing rhamnose metabolic process The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids. tmpzr1t_l9r_go_relaxed.owl rhamnose metabolism biological_process owl:Class GO:0019318 biolink:NamedThing hexose metabolic process The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexose metabolism biological_process owl:Class GO:0005178 biolink:NamedThing integrin binding Binding to an integrin. tmpzr1t_l9r_go_relaxed.owl integrin ligand molecular_function owl:Class GO:0050839 biolink:NamedThing cell adhesion molecule binding Binding to a cell adhesion molecule. tmpzr1t_l9r_go_relaxed.owl CAM binding|cell adhesion receptor activity|cell adhesion molecule activity|adhesive extracellular matrix constituent molecular_function owl:Class GO:0090440 biolink:NamedThing abscisic acid transmembrane transporter activity Enables the transfer of abscisic acid from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl abscisic acid transporter activity tb 2012-08-20T14:29:42Z molecular_function owl:Class GO:0015665 biolink:NamedThing alcohol transmembrane transporter activity Enables the transfer of an alcohol from one side of a membrane to the other. An alcohol is any carbon compound that contains a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010900 biolink:NamedThing negative regulation of phosphatidylcholine catabolic process Any process that decreases the rate, frequency or extent of phosphatidylcholine catabolism. Phosphatidylcholine catabolic processes are the chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150174 biolink:NamedThing negative regulation of phosphatidylcholine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylcholine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:03:53Z biological_process owl:Class GO:2000849 biolink:NamedThing regulation of glucocorticoid secretion Any process that modulates the frequency, rate or extent of glucocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:44:43Z biological_process owl:Class GO:2000846 biolink:NamedThing regulation of corticosteroid hormone secretion Any process that modulates the frequency, rate or extent of corticosteroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of corticosteroid secretion bf 2011-07-26T08:43:38Z biological_process owl:Class GO:0033050 biolink:NamedThing clavulanic acid biosynthetic process The chemical reactions and pathways resulting in the formation of clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl clavulanic acid anabolism|clavulanic acid formation|clavulanic acid synthesis|clavulanic acid biosynthesis Wikipedia:Clavulanic_acid biological_process owl:Class GO:0050714 biolink:NamedThing positive regulation of protein secretion Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein secretion|up regulation of protein secretion|activation of protein secretion|upregulation of protein secretion|stimulation of protein secretion biological_process owl:Class GO:1903532 biolink:NamedThing positive regulation of secretion by cell Any process that activates or increases the frequency, rate or extent of secretion by cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular secretion|up-regulation of cellular secretion|up regulation of cellular secretion|activation of secretion by cell|upregulation of secretion by cell|up-regulation of secretion by cell|activation of cellular secretion|up regulation of secretion by cell|upregulation of cellular secretion pm 2014-10-08T13:25:17Z biological_process owl:Class GO:1905042 biolink:NamedThing negative regulation of epithelium regeneration Any process that stops, prevents or reduces the frequency, rate or extent of epithelium regeneration. tmpzr1t_l9r_go_relaxed.owl inhibition of epithelium regeneration|down-regulation of regeneration of epithelium|downregulation of epithelium regeneration|down regulation of regeneration of epithelium|down-regulation of epithelium regeneration|down regulation of epithelium regeneration|negative regulation of regeneration of epithelium|downregulation of regeneration of epithelium|inhibition of regeneration of epithelium rph 2016-03-11T10:59:03Z biological_process owl:Class GO:1905041 biolink:NamedThing regulation of epithelium regeneration Any process that modulates the frequency, rate or extent of epithelium regeneration. tmpzr1t_l9r_go_relaxed.owl regulation of regeneration of epithelium rph 2016-03-11T10:58:53Z biological_process owl:Class GO:0016830 biolink:NamedThing carbon-carbon lyase activity Catalysis of the cleavage of C-C bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. tmpzr1t_l9r_go_relaxed.owl other carbon-carbon lyase activity EC:4.1.-.-|Reactome:R-HSA-389611 molecular_function owl:Class GO:1900650 biolink:NamedThing negative regulation of dehydroaustinol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of dehydroaustinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of dehydroaustinol anabolism|negative regulation of dehydroaustinol formation|down regulation of dehydroaustinol biosynthesis|down-regulation of dehydroaustinol synthesis|negative regulation of dehydroaustinol biosynthesis|down regulation of dehydroaustinol formation|inhibition of dehydroaustinol formation|down-regulation of dehydroaustinol biosynthetic process|inhibition of dehydroaustinol biosynthetic process|negative regulation of dehydroaustinol anabolism|downregulation of dehydroaustinol biosynthesis|downregulation of dehydroaustinol biosynthetic process|down-regulation of dehydroaustinol formation|down regulation of dehydroaustinol anabolism|inhibition of dehydroaustinol synthesis|downregulation of dehydroaustinol formation|down-regulation of dehydroaustinol anabolism|downregulation of dehydroaustinol synthesis|down regulation of dehydroaustinol biosynthetic process|negative regulation of dehydroaustinol synthesis|inhibition of dehydroaustinol anabolism|down-regulation of dehydroaustinol biosynthesis|inhibition of dehydroaustinol biosynthesis|down regulation of dehydroaustinol synthesis di 2012-05-22T04:06:22Z biological_process owl:Class GO:0002705 biolink:NamedThing positive regulation of leukocyte mediated immunity Any process that activates or increases the frequency, rate, or extent of leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl stimulation of leukocyte mediated immunity|up-regulation of leukocyte mediated immunity|up regulation of leukocyte mediated immunity|positive regulation of immune cell mediated immunity|positive regulation of leucocyte mediated immunity|upregulation of leukocyte mediated immunity|activation of leukocyte mediated immunity biological_process owl:Class GO:0002703 biolink:NamedThing regulation of leukocyte mediated immunity Any process that modulates the frequency, rate, or extent of leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl regulation of immune cell mediated immunity|regulation of leucocyte mediated immunity biological_process owl:Class GO:0035776 biolink:NamedThing pronephric proximal tubule development The progression of the pronephric proximal tubule over time, from its formation to the mature structure. A pronephric nephron tubule is an epithelial tube that is part of the pronephros. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-04T11:02:54Z biological_process owl:Class GO:0039020 biolink:NamedThing pronephric nephron tubule development The process whose specific outcome is the progression of a pronephric nephron tubule over time, from its formation to the mature structure. The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T10:11:36Z biological_process owl:Class GO:0006598 biolink:NamedThing polyamine catabolic process The chemical reactions and pathways resulting in the breakdown of polyamines, any organic compound containing two or more amino groups. tmpzr1t_l9r_go_relaxed.owl polyamine degradation|polyamine breakdown|polyamine catabolism biological_process owl:Class GO:0006595 biolink:NamedThing polyamine metabolic process The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. tmpzr1t_l9r_go_relaxed.owl polyamine metabolism biological_process owl:Class GO:0106114 biolink:NamedThing regulation of mitotic cohesin dsDNA (leading strand) loading Any process that modulates the frequency, rate or extent of mitotic cohesin dsDNA (leading strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:48:13Z biological_process owl:Class GO:0002722 biolink:NamedThing negative regulation of B cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell cytokine production. tmpzr1t_l9r_go_relaxed.owl negative regulation of B-lymphocyte cytokine production|down regulation of B cell cytokine production|negative regulation of B-cell cytokine production|negative regulation of B lymphocyte cytokine production|down-regulation of B cell cytokine production|downregulation of B cell cytokine production|inhibition of B cell cytokine production biological_process owl:Class GO:0010116 biolink:NamedThing positive regulation of abscisic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. tmpzr1t_l9r_go_relaxed.owl activation of abscisic acid biosynthetic process|positive regulation of abscisic acid biosynthesis|up-regulation of abscisic acid biosynthetic process|positive regulation of abscisic acid formation|positive regulation of abscisic acid anabolism|positive regulation of abscisic acid synthesis|stimulation of abscisic acid biosynthetic process|upregulation of abscisic acid biosynthetic process|up regulation of abscisic acid biosynthetic process biological_process owl:Class GO:0032892 biolink:NamedThing positive regulation of organic acid transport Any process that activates or increases the frequency, rate or extent of the directed movement of organic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of organic acid transport|upregulation of organic acid transport|up regulation of organic acid transport|up-regulation of organic acid transport|activation of organic acid transport biological_process owl:Class GO:0032890 biolink:NamedThing regulation of organic acid transport Any process that modulates the frequency, rate or extent of the directed movement of organic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905735 biolink:NamedThing regulation of L-proline import across plasma membrane Any process that modulates the frequency, rate or extent of L-proline import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-04T20:42:16Z biological_process owl:Class GO:0036152 biolink:NamedThing phosphatidylethanolamine acyl-chain remodeling Remodeling the acyl chains of phosphatidylethanolamine, through sequential deacylation and re-acylation reactions, to generate phosphatidylethanolamine containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-14T02:09:00Z biological_process owl:Class GO:0046470 biolink:NamedThing phosphatidylcholine metabolic process The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine metabolism biological_process owl:Class GO:0035343 biolink:NamedThing negative regulation of inosine transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of hypoxanthine riboside transport bf 2010-03-04T10:06:07Z biological_process owl:Class GO:0046346 biolink:NamedThing mannosamine catabolic process The chemical reactions and pathways resulting in the breakdown of mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins. tmpzr1t_l9r_go_relaxed.owl mannosamine catabolism|mannosamine breakdown|mannosamine degradation biological_process owl:Class GO:0046348 biolink:NamedThing amino sugar catabolic process The chemical reactions and pathways resulting in the breakdown of any amino sugar, sugars containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl amino sugar catabolism|amino sugar degradation|aminosaccharide catabolism|aminosaccharide catabolic process|amino sugar breakdown biological_process owl:Class GO:0033787 biolink:NamedThing cyanocobalamin reductase (cyanide-eliminating) activity Catalysis of the reaction: cob(I)alamin + hydrogen cyanide + NADP(+) = cyanocob(III)alamin + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl cyanocobalamin reductase (NADPH; CN-eliminating) activity|cob(I)alamin, cyanide:NADP+ oxidoreductase activity|cyanocobalamin reductase (NADPH, cyanide-eliminating) activity|NADPH2:cyanocob(III)alamin oxidoreductase (cyanide-eliminating) activity|NADPH:cyanocob(III)alamin oxidoreductase (cyanide-eliminating) activity|cyanocobalamin reductase activity EC:1.16.1.6|RHEA:16113|MetaCyc:1.6.99.12-RXN|Reactome:R-HSA-3149519|KEGG_REACTION:R02999 Formerly EC:1.6.99.12. molecular_function owl:Class GO:0016723 biolink:NamedThing oxidoreductase activity, acting on metal ions, NAD or NADP as acceptor Catalysis of an oxidation-reduction in which the metal ion is reduced and NAD+ or NADP+ acts as an electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor|oxidoreductase activity, reducing metal ions, NAD or NADP as acceptor https://github.com/geneontology/go-ontology/issues/20675 EC:1.16.1.-|Reactome:R-HSA-917811 molecular_function owl:Class GO:0035539 biolink:NamedThing 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity Catalysis of the reaction: 8-oxo-7,8-dihydrodeoxyguanosine-triphosphate (8-oxo-dGTP) + H2O = 8-oxo-7,8-dihydrodeoxyguanosine phosphate (8-oxo-dGMP) + diphosphate. 8-oxo-dGTP is the oxidised form of the free guanine nucleotide and can act as a potent mutagenic substrate for DNA synthesis causing transversion mutations. 8-oxo-dGTPase hydrolyses 8-oxo-dGTP to its monophosphate form to prevent the misincorporation of 8-oxo-dGTP into cellular DNA. tmpzr1t_l9r_go_relaxed.owl 8-oxo-7,8-dihydrodeoxyguanosine triphosphatase activity|8-oxo-dGTP pyrophosphohydrolase activity|8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate pyrophosphohydrolase activity|8-oxo-dGTPase activity|8-oxo-7,8-dihydro-deoxyguanosine triphosphate pyrophosphatase activity RHEA:31575|Reactome:R-HSA-2395869|Reactome:R-HSA-2395849|EC:3.6.1.55 bf 2010-05-07T10:54:19Z molecular_function owl:Class GO:0047429 biolink:NamedThing nucleoside-triphosphate diphosphatase activity Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide. tmpzr1t_l9r_go_relaxed.owl nucleoside-triphosphate pyrophosphatase activity|nucleoside-triphosphate diphosphohydrolase activity MetaCyc:3.6.1.19-RXN|EC:3.6.1.9 molecular_function owl:Class GO:0140052 biolink:NamedThing cellular response to oxidised low-density lipoprotein particle stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidized lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to oxidised LDL particle stimulus|cellular response to oxidized LDL particle stimulus|cellular response to ox-LDL particle stimulus|cellular response to oxLDL particle stimulus|cellular response to oxidized low-density lipoprotein particle stimulus pg 2017-06-26T09:40:00Z biological_process owl:Class GO:0055094 biolink:NamedThing response to lipoprotein particle Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl response to lipoprotein particle stimulus biological_process owl:Class GO:0016799 biolink:NamedThing hydrolase activity, hydrolyzing N-glycosyl compounds Catalysis of the hydrolysis of any N-glycosyl bond. tmpzr1t_l9r_go_relaxed.owl EC:3.2.2.- molecular_function owl:Class GO:0016798 biolink:NamedThing hydrolase activity, acting on glycosyl bonds Catalysis of the hydrolysis of any glycosyl bond. tmpzr1t_l9r_go_relaxed.owl glycosidase activity|glycosylase|N-glycosylase Reactome:R-HSA-2065233|Reactome:R-HSA-1793176|EC:3.2.-.- molecular_function owl:Class GO:0042684 biolink:NamedThing cardioblast cell fate commitment The process in which a cell becomes committed to becoming a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060911 biolink:NamedThing cardiac cell fate commitment The commitment of cells to specific cardiac cell fates and their capacity to differentiate into cardiac cells. Cardiac cells are cells that comprise the organ which pumps blood through the circulatory system. tmpzr1t_l9r_go_relaxed.owl cardiocyte cell fate commitment dph 2009-09-17T08:47:00Z biological_process owl:Class GO:0008568 biolink:NamedThing microtubule-severing ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl katanin activity|ATP phosphohydrolase (tubulin-dimerizing) EC:5.6.1.1|MetaCyc:3.6.4.3-RXN|Reactome:R-HSA-9668419 See also the cellular component term 'katanin complex ; GO:0008352'. molecular_function owl:Class GO:0140096 biolink:NamedThing catalytic activity, acting on a protein Catalytic activity that acts to modify a protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225 pg 2017-09-14T10:32:59Z molecular_function owl:Class GO:0018912 biolink:NamedThing 1,4-dichlorobenzene metabolic process The chemical reactions and pathways involving 1,4-dichlorobenzene (p-dichlorobenzene or paramoth), a derivative of benzene with two chlorine atoms attached at opposite positions on the ring. It forms white crystals at room temperature and is used as an insecticidal fumigant, particularly in mothballs. tmpzr1t_l9r_go_relaxed.owl 1,4-dichlorobenzene metabolism UM-BBD_pathwayID:dcz biological_process owl:Class GO:0042537 biolink:NamedThing benzene-containing compound metabolic process The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation, or any of its derivatives. tmpzr1t_l9r_go_relaxed.owl benzene and derivative metabolism|benzene and derivative metabolic process|benzene-containing compound metabolism biological_process owl:Class GO:0090298 biolink:NamedThing negative regulation of mitochondrial DNA replication Any process that decreases the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial DNA synthesis tb 2010-03-12T03:58:25Z biological_process owl:Class GO:2000104 biolink:NamedThing negative regulation of DNA-dependent DNA replication Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent DNA replication. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-15T01:37:05Z biological_process owl:Class GO:0098759 biolink:NamedThing cellular response to interleukin-8 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-8 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-8 biological_process owl:Class GO:0071345 biolink:NamedThing cellular response to cytokine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T02:41:12Z biological_process owl:Class GO:0061264 biolink:NamedThing mesonephric glomerular mesangial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric glomerular mesangial cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:59:11Z biological_process owl:Class GO:0072152 biolink:NamedThing glomerular mesangial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a glomerular mesangial cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:14:58Z biological_process owl:Class GO:0071394 biolink:NamedThing cellular response to testosterone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:11:29Z biological_process owl:Class GO:0042457 biolink:NamedThing ethylene catabolic process The chemical reactions and pathways resulting in the breakdown of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. tmpzr1t_l9r_go_relaxed.owl ethylene breakdown|ethene catabolism|ethene catabolic process|ethylene degradation|ethylene catabolism biological_process owl:Class GO:0009692 biolink:NamedThing ethylene metabolic process The chemical reactions and pathways involving ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. tmpzr1t_l9r_go_relaxed.owl ethene metabolic process|ethylene metabolism|ethene metabolism biological_process owl:Class GO:1902207 biolink:NamedThing positive regulation of interleukin-2-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of interleukin-2-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-2-mediated signalling pathway|upregulation of interleukin-2-mediated signaling pathway|up regulation of IL-2-mediated signaling pathway|up-regulation of interleukin-2-mediated signaling pathway|activation of IL-2-mediated signaling pathway|activation of interleukin-2-mediated signaling pathway|up regulation of interleukin-2-mediated signaling pathway|upregulation of IL-2-mediated signaling pathway|up-regulation of interleukin-2-mediated signalling pathway|activation of interleukin-2-mediated signalling pathway|upregulation of interleukin-2-mediated signalling pathway|positive regulation of IL-2-mediated signaling pathway|up regulation of interleukin-2-mediated signalling pathway|up-regulation of IL-2-mediated signaling pathway lb 2013-06-11T07:34:50Z biological_process owl:Class GO:0042846 biolink:NamedThing glycol catabolic process The chemical reactions and pathways resulting in the breakdown of glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent. tmpzr1t_l9r_go_relaxed.owl glycol degradation|glycol breakdown|glycol catabolism|dihydric alcohol catabolism|dihydric alcohol catabolic process biological_process owl:Class GO:0042844 biolink:NamedThing glycol metabolic process The chemical reactions and pathways involving glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent. tmpzr1t_l9r_go_relaxed.owl dihydric alcohol metabolic process|dihydric alcohol metabolism|glycol metabolism biological_process owl:Class GO:2000553 biolink:NamedThing positive regulation of T-helper 2 cell cytokine production Any process that activates or increases the frequency, rate or extent of T-helper 2 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th2 cell cytokine production ebc 2011-04-03T07:32:58Z biological_process owl:Class GO:0002726 biolink:NamedThing positive regulation of T cell cytokine production Any process that activates or increases the frequency, rate, or extent of T cell cytokine production. tmpzr1t_l9r_go_relaxed.owl activation of T cell cytokine production|stimulation of T cell cytokine production|positive regulation of T-cell cytokine production|up regulation of T cell cytokine production|upregulation of T cell cytokine production|positive regulation of T lymphocyte cytokine production|positive regulation of T-lymphocyte cytokine production|up-regulation of T cell cytokine production biological_process owl:Class GO:0005142 biolink:NamedThing interleukin-11 receptor binding Binding to an interleukin-11 receptor. tmpzr1t_l9r_go_relaxed.owl IL-11|interleukin-11 receptor ligand molecular_function owl:Class GO:0070851 biolink:NamedThing growth factor receptor binding Binding to a growth factor receptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-07T11:23:02Z molecular_function owl:Class GO:0010735 biolink:NamedThing positive regulation of transcription via serum response element binding Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific set of genes as a result of a transcription factor interacting with a serum response element (SRE). A serum response element is a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045944 biolink:NamedThing positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl stimulation of global transcription from RNA polymerase II promoter|upregulation of transcription from RNA polymerase II promoter|stimulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|up-regulation of global transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter, global|activation of transcription from RNA polymerase II promoter|up-regulation of transcription from RNA polymerase II promoter|upregulation of global transcription from RNA polymerase II promoter|up regulation of global transcription from RNA polymerase II promoter|activation of global transcription from RNA polymerase II promoter|positive regulation of gene-specific transcription from RNA polymerase II promoter|up regulation of transcription from RNA polymerase II promoter|positive regulation of global transcription from Pol II promoter|positive regulation of transcription from Pol II promoter GO:0010552|GO:0045817 biological_process owl:Class GO:0060862 biolink:NamedThing negative regulation of floral organ abscission Any process that decreases the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T04:05:23Z biological_process owl:Class GO:0018243 biolink:NamedThing protein O-linked glycosylation via threonine The glycosylation of protein via the O3 atom of peptidyl-threonine, forming O3-glycosyl-L-threonine; the most common forms are N-acetylgalactosaminyl, mannosyl, and galactosyl threonine. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation via threonine RESID:AA0155 biological_process owl:Class GO:0006493 biolink:NamedThing protein O-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation RESID:AA0157|RESID:AA0212|RESID:AA0153|RESID:AA0154|RESID:AA0155 biological_process owl:Class GO:0015969 biolink:NamedThing guanosine tetraphosphate metabolic process The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine tetraphosphate (5'-ppGpp-3') metabolism|guanosine tetraphosphate metabolism|guanosine tetraphosphate (5'-ppGpp-3') metabolic process MetaCyc:PPGPPMET-PWY biological_process owl:Class GO:0009150 biolink:NamedThing purine ribonucleotide metabolic process The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleotide metabolism biological_process owl:Class GO:1903358 biolink:NamedThing regulation of Golgi organization Any process that modulates the frequency, rate or extent of Golgi organization. tmpzr1t_l9r_go_relaxed.owl regulation of Golgi organisation|regulation of Golgi organization and biogenesis als 2014-08-21T10:22:22Z biological_process owl:Class GO:0042323 biolink:NamedThing negative regulation of circadian sleep/wake cycle, non-REM sleep Any process that stops, prevents or reduces the duration or quality of non-rapid eye movement (NREM) sleep. tmpzr1t_l9r_go_relaxed.owl down regulation of circadian sleep/wake cycle, non-REM sleep|inhibition of circadian sleep/wake cycle, non-REM sleep|negative regulation of non-REM sleep|down-regulation of circadian sleep/wake cycle, non-REM sleep|downregulation of circadian sleep/wake cycle, non-REM sleep biological_process owl:Class GO:0036140 biolink:NamedThing peptidyl-asparagine 3-dioxygenase activity Catalysis of the reaction: peptidyl L-asparagine + 2-oxoglutarate + O2 = peptidyl 3-hydroxy-L-asparagine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-07T09:27:44Z molecular_function owl:Class GO:1901657 biolink:NamedThing glycosyl compound metabolic process The chemical reactions and pathways involving glycosyl compound. tmpzr1t_l9r_go_relaxed.owl glycosyl compound metabolism pr 2012-11-20T14:24:07Z biological_process owl:Class GO:1901135 biolink:NamedThing carbohydrate derivative metabolic process The chemical reactions and pathways involving carbohydrate derivative. tmpzr1t_l9r_go_relaxed.owl carbohydrate derivative metabolism bf 2012-07-12T04:05:09Z biological_process owl:Class GO:0002707 biolink:NamedThing negative regulation of lymphocyte mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of lymphocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl inhibition of lymphocyte mediated immunity|downregulation of lymphocyte mediated immunity|down regulation of lymphocyte mediated immunity|down-regulation of lymphocyte mediated immunity biological_process owl:Class GO:0002704 biolink:NamedThing negative regulation of leukocyte mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl inhibition of leukocyte mediated immunity|negative regulation of leucocyte mediated immunity|negative regulation of immune cell mediated immunity|downregulation of leukocyte mediated immunity|down regulation of leukocyte mediated immunity|down-regulation of leukocyte mediated immunity biological_process owl:Class GO:0150070 biolink:NamedThing regulation of arginase activity Any process that modulates the frequency, rate or extent of arginase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T09:17:30Z biological_process owl:Class GO:0060906 biolink:NamedThing negative regulation of heterochromatin assembly by small RNA Any process that decreases the frequency, rate or extent of heterochromatin assembly by small RNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of chromatin silencing by small RNA|negative regulation of RNAi-mediated heterochromatin assembly https://github.com/geneontology/go-ontology/issues/19112 dph 2009-08-14T01:22:24Z biological_process owl:Class GO:0010964 biolink:NamedThing regulation of heterochromatin assembly by small RNA Any process that modulates the frequency, rate or extent of heterochromatin assembly by small RNA. tmpzr1t_l9r_go_relaxed.owl regulation of RNAi-mediated heterochromatin assembly|regulation of chromatin silencing by small RNA https://github.com/geneontology/go-ontology/issues/19112 tb 2009-05-20T11:25:42Z biological_process owl:Class GO:0150077 biolink:NamedThing regulation of neuroinflammatory response Any process that modulates the frequency, rate or extent of neuroinflammatory response. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-26T12:32:18Z biological_process owl:Class GO:0050727 biolink:NamedThing regulation of inflammatory response Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048000 biolink:NamedThing isoflavone 3'-hydroxylase activity Catalysis of the reaction: formononetin + NADPH + O2 = calycosin + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl formononetin,NADPH:oxygen oxidoreductase (3'-hydroxylating)|isoflavone 3'-monooxygenase activity RHEA:22960|EC:1.14.14.88|MetaCyc:RXN-3762 molecular_function owl:Class GO:0099556 biolink:NamedThing trans-synaptic signaling by carbon monoxide, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the release and reception of carbon monoxide molecules, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0099554 biolink:NamedThing trans-synaptic signaling by soluble gas, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the release and reception of gaseous molecules, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0018798 biolink:NamedThing gallate decarboxylase activity Catalysis of the reaction: gallate + H(+) = CO(2) + pyrogallol. tmpzr1t_l9r_go_relaxed.owl gallate carboxy-lyase activity|gallic acid decarboxylase activity|gallate carboxy-lyase (pyrogallol-forming) RHEA:12749|MetaCyc:GALLATE-DECARBOXYLASE-RXN|EC:4.1.1.59|UM-BBD_reactionID:r0005|KEGG_REACTION:R03247 molecular_function owl:Class GO:0039602 biolink:NamedThing suppression by virus of host transcription initiation from RNA polymerase II promoter Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template. tmpzr1t_l9r_go_relaxed.owl inhibition of host transcription initiation by virus|suppression by virus of host DNA-dependent transcription, initiation VZ:904 bf 2012-07-05T03:29:34Z GO:0039601 biological_process owl:Class GO:0039653 biolink:NamedThing suppression by virus of host transcription Any process in which a virus stops, prevents, or reduces the activity of host DNA-dependent transcription; the cellular synthesis of RNA on a template of DNA. Viral proteins can interfere with either host RNA polymerase or with transcription factors. tmpzr1t_l9r_go_relaxed.owl host transcription shutoff by virus|suppression by virus of host DNA-dependent transcription VZ:1577 bf 2012-10-11T16:11:17Z biological_process owl:Class GO:0099175 biolink:NamedThing regulation of postsynapse organization Any process that modulates the physical form of a postsynapse. tmpzr1t_l9r_go_relaxed.owl regulation of postsynapse structure|regulation of postsynapse organisation|regulation of postsynapse organization and biogenesis biological_process owl:Class GO:0140667 biolink:NamedThing regulation of oxytocin production Any process that modulates the frequency, rate, or extent of production of oxytocin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21535 pg 2021-06-24T11:28:07Z biological_process owl:Class GO:2000199 biolink:NamedThing positive regulation of ribonucleoprotein complex localization Any process that activates or increases the frequency, rate or extent of ribonucleoprotein complex localization. tmpzr1t_l9r_go_relaxed.owl positive regulation of establishment and maintenance of ribonucleoprotein complex localization|positive regulation of cellular ribonucleoprotein complex localization|positive regulation of ribonucleoprotein complex localisation|positive regulation of RNP localization mah 2010-10-26T10:35:55Z biological_process owl:Class GO:2000197 biolink:NamedThing regulation of ribonucleoprotein complex localization Any process that modulates the frequency, rate or extent of ribonucleoprotein complex localization. tmpzr1t_l9r_go_relaxed.owl regulation of cellular ribonucleoprotein complex localization|regulation of RNP localization|regulation of ribonucleoprotein complex localisation|regulation of establishment and maintenance of ribonucleoprotein complex localization mah 2010-10-26T10:35:48Z biological_process owl:Class GO:1900515 biolink:NamedThing regulation of xylose catabolic process to ethanol Any process that modulates the frequency, rate or extent of xylose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl regulation of xylose catabolism to ethanol tt 2012-05-02T04:09:07Z biological_process owl:Class GO:0043469 biolink:NamedThing regulation of D-xylose catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of xylose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046374 biolink:NamedThing teichoic acid metabolic process The chemical reactions and pathways involving teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues. tmpzr1t_l9r_go_relaxed.owl teichoic acid metabolism biological_process owl:Class GO:0080145 biolink:NamedThing cysteine homeostasis Any process involved in the maintenance of an internal steady state of cysteine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl dhl 2010-01-27T04:49:14Z biological_process owl:Class GO:0055080 biolink:NamedThing cation homeostasis Any process involved in the maintenance of an internal steady state of cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021905 biolink:NamedThing forebrain-midbrain boundary formation The process whose specific outcome is the creation of the forebrain-midbrain boundary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003415 biolink:NamedThing chondrocyte hypertrophy The growth of a chondrocyte, where growth contributes to the progression of the chondrocyte over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T08:48:44Z biological_process owl:Class GO:0048588 biolink:NamedThing developmental cell growth The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another. tmpzr1t_l9r_go_relaxed.owl developmental growth of a unicellular organism biological_process owl:Class GO:0062126 biolink:NamedThing fatty acid primary amide metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform primary fatty amides. tmpzr1t_l9r_go_relaxed.owl primary fatty amide metabolic process dph 2019-05-30T18:23:02Z biological_process owl:Class GO:0010684 biolink:NamedThing tricyclic triterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of tricyclic triterpenoid compounds, terpenoids with six isoprene units and 3 rings. tmpzr1t_l9r_go_relaxed.owl tricyclic triterpenoid catabolism biological_process owl:Class GO:0018184 biolink:NamedThing protein polyamination The modification of a protein amino acid by polyamination. tmpzr1t_l9r_go_relaxed.owl protein amino acid polyamination biological_process owl:Class GO:0006464 biolink:NamedThing cellular protein modification process The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). tmpzr1t_l9r_go_relaxed.owl protein tagging activity|process resulting in protein modification|protein modification process biological_process owl:Class GO:0032533 biolink:NamedThing regulation of follicle cell microvillus length A process that modulates the length of a microvillus on a follicle cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008361 biolink:NamedThing regulation of cell size Any process that modulates the size of a cell. tmpzr1t_l9r_go_relaxed.owl cell size control biological_process owl:Class GO:0015464 biolink:NamedThing acetylcholine receptor activity Combining with acetylcholine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl For nicotinic acetylcholine receptors that act as ion channels, instead use 'acetylcholine-gated cation channel activity ; GO:0022848'. molecular_function owl:Class GO:0061130 biolink:NamedThing pancreatic bud formation The morphogenetic process in which the foregut region specified to become the pancreas forms a bud. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T09:33:40Z biological_process owl:Class GO:0048645 biolink:NamedThing animal organ formation The process pertaining to the initial formation of an animal organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. Organs are a natural part or structure in an animal or a plant, capable of performing some special action (termed its function), which is essential to the life or well-being of the whole. The heart and lungs are organs of animals, and the petal and leaf are organs of plants. In animals the organs are generally made up of several tissues, one of which usually predominates, and determines the principal function of the organ. tmpzr1t_l9r_go_relaxed.owl initiation of an animal organ primordium|animal organ primordium initiation biological_process owl:Class GO:1900452 biolink:NamedThing regulation of long-term synaptic depression Any process that modulates the frequency, rate or extent of long term synaptic depression. tmpzr1t_l9r_go_relaxed.owl regulation of LTD|regulation of long term synaptic depression|regulation of long term depression rl 2012-04-27T03:54:58Z biological_process owl:Class GO:0048167 biolink:NamedThing regulation of synaptic plasticity A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers. tmpzr1t_l9r_go_relaxed.owl Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0033670 biolink:NamedThing regulation of NAD+ kinase activity Any process that modulates the frequency, rate or extent of NAD kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to an NAD molecule. tmpzr1t_l9r_go_relaxed.owl NAD kinase regulator|regulation of NAD kinase activity biological_process owl:Class GO:0060379 biolink:NamedThing cardiac muscle cell myoblast differentiation The process in which a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life. tmpzr1t_l9r_go_relaxed.owl myocardial precursor cell differentiation|cardiac myoblast differentiation biological_process owl:Class GO:0010002 biolink:NamedThing cardioblast differentiation The process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl cardioblast cell differentiation|cardiomyocyte generation|cardiac precursor cell differentiation biological_process owl:Class GO:0042339 biolink:NamedThing keratan sulfate metabolic process The chemical reactions and pathways involving keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues. tmpzr1t_l9r_go_relaxed.owl keratan sulfate metabolism|keratan sulphate metabolism|keratan sulphate metabolic process biological_process owl:Class GO:1903510 biolink:NamedThing mucopolysaccharide metabolic process The chemical reactions and pathways involving mucopolysaccharide. tmpzr1t_l9r_go_relaxed.owl mucopolysaccharide metabolism dph 2014-10-01T21:55:47Z biological_process owl:Class GO:0090685 biolink:NamedThing RNA localization to nucleus A macromolecular localization process in which RNA is transported to and maintained in a location within the nucleus. tmpzr1t_l9r_go_relaxed.owl RNA localisation to nucleus tb 2016-07-19T17:00:49Z biological_process owl:Class GO:0006403 biolink:NamedThing RNA localization A process in which RNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl RNA localisation|establishment and maintenance of RNA localization biological_process owl:Class GO:0008119 biolink:NamedThing thiopurine S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a thiopurine = S-adenosyl-L-homocysteine + a thiopurine S-methylether. tmpzr1t_l9r_go_relaxed.owl mercaptopurine methyltransferase activity|TPMT|6-thiopurine transmethylase activity|S-adenosyl-L-methionine:thiopurine S-methyltransferase activity|thiopurine methyltransferase activity MetaCyc:THIOPURINE-S-METHYLTRANSFERASE-RXN|EC:2.1.1.67|Reactome:R-HSA-158609|Reactome:R-HSA-5603379 molecular_function owl:Class GO:0061388 biolink:NamedThing regulation of rate of cell growth Any process that modulates the rate of cell growth. tmpzr1t_l9r_go_relaxed.owl dph 2011-07-14T10:18:06Z biological_process owl:Class GO:0001558 biolink:NamedThing regulation of cell growth Any process that modulates the frequency, rate, extent or direction of cell growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003730 biolink:NamedThing mRNA 3'-UTR binding Binding to a 3' untranslated region of an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl mRNA 3' UTR binding molecular_function owl:Class GO:0003729 biolink:NamedThing mRNA binding Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. tmpzr1t_l9r_go_relaxed.owl base pairing with mRNA GO:0000499 molecular_function owl:Class GO:0061076 biolink:NamedThing negative regulation of neural retina development Any process that decreases the rate, frequency, or extent of neural retina development, the progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-16T12:46:11Z biological_process owl:Class GO:0061074 biolink:NamedThing regulation of neural retina development Any process that modulates the rate, frequency, or extent of neural retina development, the progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-16T11:47:05Z biological_process owl:Class GO:0062123 biolink:NamedThing regulation of linear element maturation Any process that modulates the rate, frequency or extent of linear element maturation. tmpzr1t_l9r_go_relaxed.owl dph 2019-04-23T13:36:20Z biological_process owl:Class GO:0004304 biolink:NamedThing estrone sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + estrone = adenosine 3',5'-bisphosphate + estrone 3-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:estrone 3-sulfotransferase activity|3'-phosphoadenylyl sulfate-estrone 3-sulfotransferase activity|3'-phosphoadenylylsulfate:oestrone sulfotransferase activity|estrogen sulphotransferase activity|estrogen sulfotransferase|oestrogen sulphotransferase activity|estrone sulphotransferase activity RHEA:15973|MetaCyc:ESTRONE-SULFOTRANSFERASE-RXN|Reactome:R-HSA-176664|EC:2.8.2.4 molecular_function owl:Class GO:0044489 biolink:NamedThing negative regulation of voltage-gated sodium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a voltage-gated sodium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T12:21:02Z biological_process owl:Class GO:0044362 biolink:NamedThing negative regulation of molecular function in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the function of proteins in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T02:12:49Z biological_process owl:Class GO:0061815 biolink:NamedThing deubiquitinase, acting on linear ubiquitin Catalysis of the hydrolysis of ubiquitin units from linear ubiquitin chains. tmpzr1t_l9r_go_relaxed.owl Met1 linkage specific DUB|linear ubiquitin specific deubiquitinase activity|ubiquitinyl hydrolase activity, acting on linear ubiquitin dph 2016-11-28T13:58:44Z molecular_function owl:Class GO:0102030 biolink:NamedThing dTDP-L-rhamnose synthetase activity Catalysis of the reaction: dTDP-6-deoxy-beta-L-mannose + NAD+ <=> dTDP-4-dehydro-6-deoxy-alpha-D-glucose + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:DTDPRHAMSYNTHMULTI-RXN molecular_function owl:Class GO:0042476 biolink:NamedThing odontogenesis The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food. tmpzr1t_l9r_go_relaxed.owl odontogeny|tooth morphogenesis|odontosis|tooth development|odontogenesis of calcareous or chitinous tooth Wikipedia:Odontogenesis GO:0042477 biological_process owl:Class GO:0006081 biolink:NamedThing cellular aldehyde metabolic process The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl alkanal metabolism|alkanal metabolic process|aldehyde metabolism biological_process owl:Class GO:0071704 biolink:NamedThing organic substance metabolic process The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. tmpzr1t_l9r_go_relaxed.owl organic molecular entity metabolism|organic molecular entity metabolic process|organic substance metabolism mah 2010-03-08T03:32:18Z biological_process owl:Class GO:0033025 biolink:NamedThing regulation of mast cell apoptotic process Any process that modulates the frequency, rate, or extent of mast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of mast cell apoptosis biological_process owl:Class GO:1902485 biolink:NamedThing L-cysteine binding Binding to L-cysteine. tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-12T09:06:28Z molecular_function owl:Class GO:1900193 biolink:NamedThing regulation of oocyte maturation Any process that modulates the frequency, rate or extent of oocyte maturation. tmpzr1t_l9r_go_relaxed.owl kmv 2012-03-19T09:41:18Z biological_process owl:Class GO:2000241 biolink:NamedThing regulation of reproductive process Any process that modulates the frequency, rate or extent of reproductive process. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-10T02:44:02Z biological_process owl:Class GO:0032081 biolink:NamedThing negative regulation of type II site-specific deoxyribonuclease activity Any process that stops or reduces the rate of type II restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of type II restriction endodeoxyribonuclease activity|down regulation of type II restriction endodeoxyribonuclease activity|type II restriction enzyme inhibitor|down-regulation of type II restriction endodeoxyribonuclease activity|downregulation of type II restriction endodeoxyribonuclease activity|inhibition of type II restriction endodeoxyribonuclease activity|type II restriction endodeoxyribonuclease inhibitor biological_process owl:Class GO:0005464 biolink:NamedThing UDP-xylose transmembrane transporter activity Enables the transfer of UDP-xylose from one side of a membrane to the other. UDP-xylose is a substance composed of xylose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-742373 molecular_function owl:Class GO:0015165 biolink:NamedThing pyrimidine nucleotide-sugar transmembrane transporter activity Enables the transfer of a pyrimidine nucleotide-sugar from one side of a membrane to the other. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060297 biolink:NamedThing regulation of sarcomere organization Any process that modulates the rate, frequency or extent of myofibril assembly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs. tmpzr1t_l9r_go_relaxed.owl regulation of sarcomere organisation biological_process owl:Class GO:1902903 biolink:NamedThing regulation of supramolecular fiber organization Any process that modulates the frequency, rate or extent of supramolecular fiber organization. tmpzr1t_l9r_go_relaxed.owl regulation of fibril organisation HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to negatively regulate fibrillation of alpha-Syn in vitro rl 2014-04-15T16:46:36Z biological_process owl:Class GO:0001050 biolink:NamedThing single-subunit type RNA polymerase binding Binding to a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. tmpzr1t_l9r_go_relaxed.owl T3/T7 type RNA polymerase binding|SP6-type RNA polymerase binding|T3-type RNA polymerase binding|T7-type RNA polymerase binding krc 2010-09-23T02:33:45Z molecular_function owl:Class GO:0070063 biolink:NamedThing RNA polymerase binding Binding to an RNA polymerase molecule or complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048737 biolink:NamedThing imaginal disc-derived appendage development The process whose specific outcome is the progression of an appendage over time, from its formation in the imaginal disc to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048736 biolink:NamedThing appendage development The process whose specific outcome is the progression of an appendage over time, from its formation to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031638 biolink:NamedThing zymogen activation The proteolytic processing of an inactive enzyme to an active form. tmpzr1t_l9r_go_relaxed.owl zymogen activation by proteolytic cleavage biological_process owl:Class GO:0016485 biolink:NamedThing protein processing Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl protein maturation by peptide bond cleavage|protein maturation by peptide bond hydrolysis|protein maturation by proteolysis|peptidolysis during protein maturation GO:0051605 biological_process owl:Class GO:1902929 biolink:NamedThing plasma membrane of growing cell tip Any plasma membrane part that is part of a growing cell tip. tmpzr1t_l9r_go_relaxed.owl plasma membrane part of growing cell end|plasma membrane part of growing cell tip|growing cell tip plasma membrane part mah 2014-04-22T16:02:06Z cellular_component owl:Class GO:0098590 biolink:NamedThing plasma membrane region A membrane that is a (regional) part of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl region of plasma membrane Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. dos 2014-03-06T11:55:32Z cellular_component owl:Class GO:0090181 biolink:NamedThing regulation of cholesterol metabolic process Any process that modulates the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T10:33:49Z biological_process owl:Class GO:1990015 biolink:NamedThing ensheathing process A cell projection (often from glial cells such as Schwann cells) that surrounds an unmyelinated axon or cell soma. tmpzr1t_l9r_go_relaxed.owl ensheathing process of Schwann cell NIF_Subcellular:sao1376748732 pr 2012-12-19T09:42:15Z cellular_component owl:Class GO:1900155 biolink:NamedThing negative regulation of bone trabecula formation Any process that stops, prevents or reduces the frequency, rate or extent of bone trabecula formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of skeletal trabecula formation|down-regulation of bone trabecula biogenesis|down-regulation of bone trabecula formation|down regulation of bone trabecula biogenesis|down-regulation of skeletal trabecula biogenesis|down regulation of skeletal trabecula formation|negative regulation of skeletal trabecula biogenesis|inhibition of skeletal trabecula biogenesis|down regulation of bone trabecula formation|down regulation of bone trabeculation|inhibition of skeletal trabeculation|inhibition of skeletal trabecula formation|inhibition of bone trabecula formation|negative regulation of bone trabeculation|negative regulation of bone trabecula biogenesis|inhibition of bone trabeculation|downregulation of bone trabeculation|inhibition of bone trabecula biogenesis|down regulation of skeletal trabeculation|down-regulation of bone trabeculation|downregulation of skeletal trabeculation|down-regulation of skeletal trabeculation|downregulation of bone trabecula formation|downregulation of skeletal trabecula formation|negative regulation of skeletal trabecula formation|downregulation of bone trabecula biogenesis|negative regulation of skeletal trabeculation|down regulation of skeletal trabecula biogenesis|downregulation of skeletal trabecula biogenesis vk 2012-03-07T01:47:07Z biological_process owl:Class GO:1900570 biolink:NamedThing diorcinol metabolic process The chemical reactions and pathways involving diorcinol. tmpzr1t_l9r_go_relaxed.owl diorcinol metabolism di 2012-05-15T06:35:01Z biological_process owl:Class GO:0018958 biolink:NamedThing phenol-containing compound metabolic process The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. tmpzr1t_l9r_go_relaxed.owl hydroxybenzene metabolism|carbolic acid metabolism|phenol-containing compound metabolism|carbolic acid metabolic process|hydroxybenzene metabolic process UM-BBD_pathwayID:phe Note that phenol metabolism is not included as a child of 'xenobiotic metabolism' because although it is synthesized industrially, phenol is also found naturally in animal wastes and other organic materials. It is often formed by the activity of microorganisms, which can chemically modify a variety of xenobiotic and naturally occurring phenolic compounds. biological_process owl:Class GO:0019417 biolink:NamedThing sulfur oxidation The chemical reactions and pathways resulting the addition of oxygen to elemental sulfur. tmpzr1t_l9r_go_relaxed.owl sulphur oxidation biological_process owl:Class GO:0047133 biolink:NamedThing dimethylamine dehydrogenase activity Catalysis of the reaction: electron-transferring flavoprotein + H2O + dimethylamine = reduced electron-transferring flavoprotein + formaldehyde + methylamine. tmpzr1t_l9r_go_relaxed.owl dimethylamine:electron-transferring flavoprotein oxidoreductase activity|DMADh activity EC:1.5.8.1|UM-BBD_reactionID:r1380|RHEA:10204|MetaCyc:1.5.8.1-RXN molecular_function owl:Class GO:0046997 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces a flavin. tmpzr1t_l9r_go_relaxed.owl EC:1.5.8.- molecular_function owl:Class GO:0051767 biolink:NamedThing nitric-oxide synthase biosynthetic process The chemical reactions and pathways resulting in the formation of a nitric-oxide synthase, an enzyme which catalyzes the reaction L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+. tmpzr1t_l9r_go_relaxed.owl nitric-oxide synthase 2 biosynthetic process|nitric-oxide synthase (type 2) biosynthetic process|nitric-oxide synthase (type II) biosynthetic process|nitric-oxide synthase-1 biosynthetic process|NOS2 biosynthesis|NO synthase biosynthesis|NOS2 synthase biosynthesis|NO synthase biosynthetic process|NOS biosynthesis|NOS biosynthetic process|NOS3 biosynthesis|nitric-oxide synthase (type II) biosynthesis|inducible nitric-oxide synthase biosynthetic process|NOS1 biosynthesis|NOS2 synthase biosynthetic process|brain nitric-oxide synthase biosynthetic process|nitric-oxide synthase-3 biosynthetic process|nitric-oxide synthase-2 biosynthetic process|nitric-oxide synthase (type 2) biosynthesis|endothelial nitric-oxide synthase biosynthetic process GO:0051768 biological_process owl:Class GO:0031416 biolink:NamedThing NatB complex A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Glu, Met-Asp, Met-Asn, or Met-Met N-terminus. In Saccharomyces the complex includes Nat3p and Mdm20p. tmpzr1t_l9r_go_relaxed.owl N-terminal acetyltransferase B complex cellular_component owl:Class GO:0031414 biolink:NamedThing N-terminal protein acetyltransferase complex A complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule. tmpzr1t_l9r_go_relaxed.owl NAT complex cellular_component owl:Class GO:0002082 biolink:NamedThing regulation of oxidative phosphorylation Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis. tmpzr1t_l9r_go_relaxed.owl OXPHOS biological_process owl:Class GO:1903715 biolink:NamedThing regulation of aerobic respiration Any process that modulates the frequency, rate or extent of aerobic respiration. tmpzr1t_l9r_go_relaxed.owl al 2014-12-08T00:40:37Z biological_process owl:Class GO:0050813 biolink:NamedThing epothilone metabolic process The chemical reactions and pathways involving epothilone, a drug obtained from the myxobacteria Sporangium cellulosum that interferes with cell division. Some epothilones are being studied as treatments for cancer. tmpzr1t_l9r_go_relaxed.owl epothilone metabolism biological_process owl:Class GO:1903041 biolink:NamedThing regulation of chondrocyte hypertrophy Any process that modulates the frequency, rate or extent of chondrocyte hypertrophy. tmpzr1t_l9r_go_relaxed.owl mr 2014-05-20T21:23:13Z biological_process owl:Class GO:0061181 biolink:NamedThing regulation of chondrocyte development Any process that modulates the rate, frequency, or extent of the process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T08:28:52Z biological_process owl:Class GO:0044221 biolink:NamedThing host cell synapse The junction between a nerve fiber of one host neuron and another host neuron or muscle fiber or glial cell; the site of interneuronal communication. tmpzr1t_l9r_go_relaxed.owl jl 2009-11-12T03:03:59Z cellular_component owl:Class GO:0031121 biolink:NamedThing equatorial microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins at the midpoint of a cell. tmpzr1t_l9r_go_relaxed.owl equatorial microtubule organisation|equatorial microtubule organization and biogenesis biological_process owl:Class GO:0000226 biolink:NamedThing microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. tmpzr1t_l9r_go_relaxed.owl microtubule cytoskeleton organization and biogenesis|microtubule cytoskeleton organisation|microtubule dynamics biological_process owl:Class GO:0006837 biolink:NamedThing serotonin transport The directed movement of serotonin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006812 biolink:NamedThing cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl trivalent inorganic cation transport|di-, tri-valent inorganic cation transport GO:0006819|GO:0015674|GO:0072512 biological_process owl:Class GO:0043624 biolink:NamedThing cellular protein complex disassembly The disaggregation of a protein complex into its constituent components, occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups, such as nucleic acids, metal ions or carbohydrate groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032984 biolink:NamedThing protein-containing complex disassembly The disaggregation of a protein-containing macromolecular complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl cellular macromolecule complex disassembly|macromolecule complex disassembly|protein complex disassembly GO:0043241|GO:0034623 biological_process owl:Class GO:1901010 biolink:NamedThing (S)-reticuline metabolic process The chemical reactions and pathways involving (S)-reticuline. tmpzr1t_l9r_go_relaxed.owl (S)-reticuline metabolism yaf 2012-06-15T10:46:22Z biological_process owl:Class GO:0046445 biolink:NamedThing benzyl isoquinoline alkaloid metabolic process The chemical reactions and pathways involving benzyl isoquinoline alkaloids, compounds with bicyclic N-containing aromatic rings. tmpzr1t_l9r_go_relaxed.owl benzyl isoquinoline alkaloid metabolism biological_process owl:Class GO:0035923 biolink:NamedThing flurbiprofen binding Binding to flurbiprofen. tmpzr1t_l9r_go_relaxed.owl 2-(2-fluoro-[1,1'-biphenyl-4-yl])propanoic acid binding bf 2011-07-15T03:53:53Z molecular_function owl:Class GO:0043177 biolink:NamedThing organic acid binding Binding to an organic acid, any acidic compound containing carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000558 biolink:NamedThing positive regulation of immunoglobulin production in mucosal tissue Any process that activates or increases the frequency, rate or extent of immunoglobulin production in mucosal tissue. tmpzr1t_l9r_go_relaxed.owl positive regulation of antibody production in mucosal tissue ebc 2011-04-03T07:52:17Z biological_process owl:Class GO:0002639 biolink:NamedThing positive regulation of immunoglobulin production Any process that activates or increases the frequency, rate, or extent of immunoglobulin production. tmpzr1t_l9r_go_relaxed.owl positive regulation of immunoglobulin secretion|up regulation of immunoglobulin production|up-regulation of immunoglobulin production|activation of immunoglobulin production|positive regulation of immunoglobulin biosynthetic process|upregulation of immunoglobulin production|stimulation of immunoglobulin production GO:0051024|GO:0002642 biological_process owl:Class GO:0106129 biolink:NamedThing positive regulation of store-operated calcium entry Any process that activates or increases the frequency, rate or extent of store-operated calcium entry. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-10T19:02:40Z biological_process owl:Class GO:0018883 biolink:NamedThing caprolactam metabolic process The chemical reactions and pathways involving caprolactam, hexahydro-2h-azepin-2-one, a cyclic amide of caproic acid used in manufacture of synthetic fibers of the polyamide type. It can cause local irritation. tmpzr1t_l9r_go_relaxed.owl caprolactam metabolism UM-BBD_pathwayID:cap biological_process owl:Class GO:0060303 biolink:NamedThing regulation of nucleosome density Any process that modulates the number of nucleosomes in a given region of a chromosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0065008 biolink:NamedThing regulation of biological quality Any process that modulates a qualitative or quantitative trait of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc. tmpzr1t_l9r_go_relaxed.owl regulation of biological attribute|regulation of biological characteristic biological_process owl:Class GO:0098786 biolink:NamedThing biofilm matrix disassembly A process that results in the disassembly of a biofilm matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098784 biolink:NamedThing biofilm matrix organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a biofilm matrix. tmpzr1t_l9r_go_relaxed.owl biofilm matrix organization and biogenesis biological_process owl:Class GO:1901325 biolink:NamedThing response to antimycin A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antimycin A stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-30T10:12:16Z biological_process owl:Class GO:0014070 biolink:NamedThing response to organic cyclic compound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. tmpzr1t_l9r_go_relaxed.owl response to organic cyclic substance biological_process owl:Class GO:0016048 biolink:NamedThing detection of temperature stimulus The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of temperature|perception of temperature|detection of thermal stimulus biological_process owl:Class GO:0009266 biolink:NamedThing response to temperature stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. tmpzr1t_l9r_go_relaxed.owl response to thermal stimulus biological_process owl:Class GO:0035611 biolink:NamedThing protein branching point deglutamylation The removal of a branching point glutamate residue. A branching point glutamate connects a glutamate side chain to a gene-encoded glutamate residue. tmpzr1t_l9r_go_relaxed.owl bf 2010-11-18T01:11:21Z biological_process owl:Class GO:0035608 biolink:NamedThing protein deglutamylation The removal of a glutamate residue from a protein. Glutamate residues in proteins can be gene-encoded, or added as side chains during the protein modification process of polyglutamylation. tmpzr1t_l9r_go_relaxed.owl protein amino acid deglutamylation bf 2010-11-18T01:04:38Z biological_process owl:Class GO:1903323 biolink:NamedThing regulation of snoRNA metabolic process Any process that modulates the frequency, rate or extent of snoRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of snoRNA metabolism vw 2014-08-18T13:05:17Z biological_process owl:Class GO:0097552 biolink:NamedThing mitochondrial double-strand break repair via homologous recombination The repair of a double-strand break in mitochondrial DNA in which the broken DNA molecule is repaired using homologous sequences. tmpzr1t_l9r_go_relaxed.owl mtDSB repair via homologous recombination Note that the processes of nuclear double-strand break repair and mitochondrial double-strand break repair are genetically separable. pr 2014-01-22T10:09:10Z biological_process owl:Class GO:0097551 biolink:NamedThing mitochondrial double-strand break repair The repair of double-strand breaks in mitochondrial DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. tmpzr1t_l9r_go_relaxed.owl mtDSB repair Note that the processes of nuclear double-strand break repair and mitochondrial double-strand break repair are genetically separable. pr 2014-01-22T10:06:54Z biological_process owl:Class GO:0090707 biolink:NamedThing establishment of plant organ orientation The process that determines the orientation of a plant organ or tissue with reference to an axis. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-05T12:42:47Z biological_process owl:Class GO:0048560 biolink:NamedThing establishment of anatomical structure orientation The process that determines the orientation of an anatomical structure with reference to an axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099054 biolink:NamedThing presynapse assembly The aggregation, arrangement and bonding together of a set of components to form a presynapse. tmpzr1t_l9r_go_relaxed.owl presynaptic terminal assembly|presynapse biogenesis biological_process owl:Class GO:0099172 biolink:NamedThing presynapse organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a presynapse. tmpzr1t_l9r_go_relaxed.owl presynapse development|presynapse morphogenesis|presynapse organisation|presynapse organization and biogenesis biological_process owl:Class GO:0016614 biolink:NamedThing oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-OH group of donors, other acceptors Reactome:R-HSA-1500781|EC:1.1.-.- molecular_function owl:Class GO:0010864 biolink:NamedThing positive regulation of protein histidine kinase activity Any process that increases the frequency, rate or extent of protein histidine kinase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032110 biolink:NamedThing regulation of protein histidine kinase activity Any process that modulates the frequency, rate or extent of protein histidine kinase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090258 biolink:NamedThing negative regulation of mitochondrial fission Any process that decreases the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial division tb 2010-02-03T04:05:32Z biological_process owl:Class GO:0090140 biolink:NamedThing regulation of mitochondrial fission Any process that modulates the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial division tb 2009-12-08T02:20:48Z biological_process owl:Class GO:0043065 biolink:NamedThing positive regulation of apoptotic process Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl up regulation of apoptosis|activation of apoptosis|pro-apoptosis|stimulation of apoptosis|positive regulation of apoptosis|upregulation of apoptosis|up-regulation of apoptosis This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is positively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. biological_process owl:Class GO:1905120 biolink:NamedThing cellular response to haloperidol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a haloperidol stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2016-04-08T12:36:47Z biological_process owl:Class GO:0097306 biolink:NamedThing cellular response to alcohol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-15T03:49:51Z biological_process owl:Class GO:0072250 biolink:NamedThing metanephric glomerular visceral epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular visceral epithelial cell. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric podocyte cell fate commitment mah 2010-03-19T03:46:41Z biological_process owl:Class GO:0072149 biolink:NamedThing glomerular visceral epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a glomerular visceral epithelial cell. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells. tmpzr1t_l9r_go_relaxed.owl podocyte cell fate commitment mah 2010-02-24T02:08:03Z biological_process owl:Class GO:2000023 biolink:NamedThing regulation of lateral root development Any process that modulates the frequency, rate or extent of lateral root development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:24:50Z biological_process owl:Class GO:2000069 biolink:NamedThing regulation of post-embryonic root development Any process that modulates the frequency, rate or extent of post-embryonic root development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-23T11:31:32Z biological_process owl:Class GO:0032446 biolink:NamedThing protein modification by small protein conjugation A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070647 biolink:NamedThing protein modification by small protein conjugation or removal A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-11T02:54:03Z biological_process owl:Class GO:0031222 biolink:NamedThing arabinan catabolic process The chemical reactions and pathways resulting in the breakdown of arabinan, a polysaccharide composed of arabinose residues. tmpzr1t_l9r_go_relaxed.owl arabinan degradation|arabinan breakdown|arabinan catabolism biological_process owl:Class GO:0000272 biolink:NamedThing polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl polysaccharide catabolism|polysaccharide breakdown|multicellular organismal polysaccharide catabolic process|polysaccharide degradation GO:0044244 biological_process owl:Class GO:0140159 biolink:NamedThing borate export across plasma membrane The directed movement of borate from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-02T10:21:37Z biological_process owl:Class GO:0140115 biolink:NamedThing export across plasma membrane The directed movement of some substance from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl efflux pg 2017-10-24T14:38:16Z biological_process owl:Class GO:0070158 biolink:NamedThing mitochondrial seryl-tRNA aminoacylation The process of coupling serine to seryl-tRNA in a mitochondrion, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070127 biolink:NamedThing tRNA aminoacylation for mitochondrial protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051279 biolink:NamedThing regulation of release of sequestered calcium ion into cytosol Any process that modulates the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria. tmpzr1t_l9r_go_relaxed.owl regulation of release of sequestered calcium ion (Ca2+)|regulation of cytoplasmic release of sequestered calcium ion (Ca2+)|regulation of release of stored calcium ion (Ca2+)|regulation of calcium mobilization|regulation of calcium ion (Ca2+) mobilization|regulation of release of stored calcium ion (Ca2+) into cytosol|regulation of cytoplasmic release of stored calcium ion (Ca2+)|regulation of release of stored calcium ion (Ca2+) into cytoplasm biological_process owl:Class GO:0051282 biolink:NamedThing regulation of sequestering of calcium ion Any process that modulates the frequency, rate or extent of the binding or confining calcium ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl regulation of sequestering of calcium ion (Ca2+)|regulation of sequestration of calcium ion (Ca2+)|regulation of calcium ion (Ca2+) retention|regulation of calcium ion (Ca2+) sequestering|regulation of retention of calcium ion (Ca2+)|regulation of calcium ion (Ca2+) sequestration|regulation of calcium ion (Ca2+) storage|regulation of storage of calcium ion (Ca2+) biological_process owl:Class GO:0030738 biolink:NamedThing tyramine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tyramine = N-methyltyramine + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl tyramine methylpherase activity|DIB O-methyltransferase (3,5-diiodo-4-hydroxy-benzoic acid)|S-adenosyl-L-methionine:tyramine N-methyltransferase activity|S-adenosyl-methionine:tyramine N-methyltransferase activity EC:2.1.1.27|MetaCyc:TYRAMINE-N-METHYLTRANSFERASE-RXN|RHEA:14865|KEGG_REACTION:R02384 molecular_function owl:Class GO:0008582 biolink:NamedThing regulation of synaptic assembly at neuromuscular junction Any process that modulates the frequency, rate or extent of synaptic assembly at neuromuscular junctions. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic growth at neuromuscular junction biological_process owl:Class GO:0051963 biolink:NamedThing regulation of synapse assembly Any process that modulates the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse. tmpzr1t_l9r_go_relaxed.owl regulation of synaptogenesis|regulation of synapse biogenesis biological_process owl:Class GO:0005515 biolink:NamedThing protein binding Binding to a protein. tmpzr1t_l9r_go_relaxed.owl glycoprotein binding|protein amino acid binding GO:0001948|GO:0045308 molecular_function owl:Class GO:0032703 biolink:NamedThing negative regulation of interleukin-2 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-2 production. tmpzr1t_l9r_go_relaxed.owl inhibition of interleukin-2 production|down regulation of interleukin-2 production|negative regulation of interleukin-2 secretion|downregulation of interleukin-2 production|down-regulation of interleukin-2 production|negative regulation of interleukin-2 biosynthetic process|negative regulation of IL-2 production GO:0045085|GO:1900041 biological_process owl:Class GO:0032663 biolink:NamedThing regulation of interleukin-2 production Any process that modulates the frequency, rate, or extent of interleukin-2 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-2 secretion|regulation of IL-2 production|regulation of interleukin-2 biosynthetic process GO:1900040|GO:0045076 biological_process owl:Class GO:1900886 biolink:NamedThing positive regulation of tridecane biosynthetic process Any process that activates or increases the frequency, rate or extent of tridecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of tridecane anabolism|positive regulation of tridecane formation|activation of tridecane biosynthesis|activation of tridecane anabolism|positive regulation of tridecane synthesis|positive regulation of tridecane biosynthesis|up regulation of tridecane formation|upregulation of tridecane anabolism|up-regulation of tridecane biosynthesis|positive regulation of tridecane anabolism|up regulation of tridecane biosynthetic process|activation of tridecane formation|up-regulation of tridecane biosynthetic process|up-regulation of tridecane anabolism|up-regulation of tridecane formation|up regulation of tridecane biosynthesis|up-regulation of tridecane synthesis|upregulation of tridecane formation|up regulation of tridecane synthesis|upregulation of tridecane biosynthetic process|upregulation of tridecane synthesis|upregulation of tridecane biosynthesis|activation of tridecane biosynthetic process|activation of tridecane synthesis tt 2012-06-13T03:01:01Z biological_process owl:Class GO:0070961 biolink:NamedThing positive regulation of neutrophil mediated killing of symbiont cell Any process that increases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl up-regulation of neutrophil mediated killing of symbiont cell|up regulation of neutrophil mediated killing of symbiont cell|upregulation of neutrophil mediated killing of symbiont cell|activation of neutrophil mediated killing of symbiont cell|stimulation of neutrophil mediated killing of symbiont cell mah 2009-10-01T02:28:49Z biological_process owl:Class GO:0031157 biolink:NamedThing regulation of aggregate size involved in sorocarp development Any process that modulates the size of the aggregate formed during sorocarp formation. tmpzr1t_l9r_go_relaxed.owl regulation of aggregation during fruiting body formation|regulation of aggregation during fruiting body biosynthesis biological_process owl:Class GO:0019827 biolink:NamedThing stem cell population maintenance The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types. tmpzr1t_l9r_go_relaxed.owl maintenance of pluripotency biological_process owl:Class GO:0044627 biolink:NamedThing modulation of complement activation, classical pathway in other organism A process that modulates the frequency, rate or extent of the classical pathway of complement activation, in a different organism. tmpzr1t_l9r_go_relaxed.owl regulation of complement activation, classical pathway in other organism jl 2012-07-05T12:55:53Z biological_process owl:Class GO:0030450 biolink:NamedThing regulation of complement activation, classical pathway Any process that modulates the frequency, rate or extent of the classical pathway of complement activation. tmpzr1t_l9r_go_relaxed.owl regulation of complement cascade, classical pathway biological_process owl:Class GO:1902823 biolink:NamedThing negative regulation of late endosome to lysosome transport Any process that stops, prevents or reduces the frequency, rate or extent of late endosome to lysosome transport. tmpzr1t_l9r_go_relaxed.owl downregulation of late endosome to lysosome transport|down-regulation of late endosome to lysosome transport|down regulation of late endosome to lysosome transport|inhibition of late endosome to lysosome transport pad 2014-03-31T10:08:51Z biological_process owl:Class GO:1903336 biolink:NamedThing negative regulation of vacuolar transport Any process that stops, prevents or reduces the frequency, rate or extent of vacuolar transport. tmpzr1t_l9r_go_relaxed.owl down regulation of vacuolar transport|downregulation of vacuolar transport|inhibition of vacuolar transport|down-regulation of vacuolar transport vw 2014-08-18T13:16:11Z biological_process owl:Class GO:1903966 biolink:NamedThing monounsaturated fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of monounsaturated fatty acid. tmpzr1t_l9r_go_relaxed.owl monounsaturated fatty acid synthesis|monounsaturated fatty acid biosynthesis|monounsaturated fatty acid anabolism|monounsaturated fatty acid formation For example, stearoyl-coenzyme A desaturase (Scd) catalyzes the desaturation of saturated fatty acids to monounsaturated fatty acids in mammals and yeast. pr 2015-02-25T20:36:07Z biological_process owl:Class GO:0008610 biolink:NamedThing lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. tmpzr1t_l9r_go_relaxed.owl lipid anabolism|lipogenesis|lipid synthesis|lipid formation|lipid biosynthesis biological_process owl:Class GO:1905102 biolink:NamedThing positive regulation of apoptosome assembly Any process that activates or increases the frequency, rate or extent of apoptosome assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of apoptosome assembly|activation of apoptosome assembly|activation of apoptosome formation|up regulation of apoptosome formation|up-regulation of apoptosome assembly|up-regulation of apoptosome formation|positive regulation of apoptosome formation|upregulation of apoptosome formation|upregulation of apoptosome assembly bc 2016-04-04T08:57:59Z biological_process owl:Class GO:0031334 biolink:NamedThing positive regulation of protein-containing complex assembly Any process that activates or increases the frequency, rate or extent of protein complex assembly. tmpzr1t_l9r_go_relaxed.owl activation of protein complex assembly|up regulation of protein complex assembly|stimulation of protein complex assembly|up-regulation of protein complex assembly|upregulation of protein complex assembly|positive regulation of protein complex assembly biological_process owl:Class GO:1900289 biolink:NamedThing negative regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of coenzyme F420-dependent bicyclic nitroimidazole catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|inhibition of coenzyme F420-dependent nitroimidazole breakdown|down regulation of coenzyme F420-dependent nitroimidazole catabolism|downregulation of coenzyme F420-dependent nitroimidazole reduction|down-regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|down-regulation of coenzyme F420-dependent nitroimidazole reduction|downregulation of coenzyme F420-dependent nitroreductase activity|negative regulation of coenzyme F420-dependent nitroimidazole reduction|inhibition of coenzyme F420-dependent nitroimidazole reduction|down regulation of coenzyme F420-dependent nitroreductase activity|downregulation of coenzyme F420-dependent nitroimidazole catabolism|inhibition of coenzyme F420-dependent nitroreductase activity|downregulation of coenzyme F420-dependent nitroimidazole breakdown|inhibition of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|down-regulation of coenzyme F420-dependent nitroimidazole breakdown|down regulation of coenzyme F420-dependent nitroimidazole breakdown|down regulation of coenzyme F420-dependent nitroimidazole reduction|negative regulation of coenzyme F420-dependent nitroreductase activity|down-regulation of coenzyme F420-dependent nitroreductase activity|down-regulation of coenzyme F420-dependent nitroimidazole catabolism|down regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|negative regulation of coenzyme F420-dependent nitroimidazole catabolism|negative regulation of coenzyme F420-dependent nitroimidazole breakdown|inhibition of coenzyme F420-dependent nitroimidazole catabolism tt 2012-04-05T06:02:51Z biological_process owl:Class GO:1900288 biolink:NamedThing regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process Any process that modulates the frequency, rate or extent of coenzyme F420-dependent bicyclic nitroimidazole catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of coenzyme F420-dependent nitroimidazole reduction|regulation of coenzyme F420-dependent nitroimidazole breakdown|regulation of coenzyme F420-dependent nitroreductase activity|regulation of coenzyme F420-dependent nitroimidazole catabolism tt 2012-04-05T06:02:41Z biological_process owl:Class GO:0102425 biolink:NamedThing myricetin 3-O-glucosyltransferase activity Catalysis of the reaction: myricetin + UDP-alpha-D-glucose <=> myricetin 3-O-beta-D-glucopyranoside + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.91|MetaCyc:RXN-13822 molecular_function owl:Class GO:1904964 biolink:NamedThing positive regulation of phytol biosynthetic process Any process that activates or increases the frequency, rate or extent of phytol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of phytol anabolism|positive regulation of phytol anabolism|up regulation of phytol biosynthesis|up-regulation of phytol biosynthesis|up-regulation of phytol formation|upregulation of phytol biosynthetic process|positive regulation of phytol synthesis|activation of phytol biosynthesis|up-regulation of phytol anabolism|activation of phytol anabolism|up regulation of phytol anabolism|positive regulation of phytol biosynthesis|up regulation of phytol synthesis|activation of phytol synthesis|upregulation of phytol synthesis|up regulation of phytol formation|upregulation of phytol biosynthesis|activation of phytol biosynthetic process|up-regulation of phytol biosynthetic process|upregulation of phytol formation|positive regulation of phytol formation|up-regulation of phytol synthesis|up regulation of phytol biosynthetic process|activation of phytol formation tb 2016-02-11T00:42:07Z biological_process owl:Class GO:1904963 biolink:NamedThing regulation of phytol biosynthetic process Any process that modulates the frequency, rate or extent of phytol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of phytol synthesis|regulation of phytol formation|regulation of phytol biosynthesis|regulation of phytol anabolism tb 2016-02-11T00:41:51Z biological_process owl:Class GO:2000655 biolink:NamedThing negative regulation of cellular response to testosterone stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to testosterone stimulus. tmpzr1t_l9r_go_relaxed.owl vk 2011-05-02T03:23:59Z biological_process owl:Class GO:0048585 biolink:NamedThing negative regulation of response to stimulus Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. tmpzr1t_l9r_go_relaxed.owl downregulation of response to stimulus|down-regulation of response to stimulus|inhibition of response to stimulus|down regulation of response to stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0071412 biolink:NamedThing cellular response to genistein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a genistein stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T03:10:04Z biological_process owl:Class GO:0033595 biolink:NamedThing response to genistein Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a genistein stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070305 biolink:NamedThing response to cGMP Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cGMP (cyclic GMP, guanosine 3',5'-cyclophosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl response to 3',5' cGMP|response to guanosine 3',5'-cyclophosphate|response to 3',5'-cGMP|response to cyclic GMP biological_process owl:Class GO:1903788 biolink:NamedThing positive regulation of glutathione biosynthetic process Any process that activates or increases the frequency, rate or extent of glutathione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of glutathione formation|upregulation of glutathione biosynthetic process|upregulation of glutathione anabolism|up regulation of glutathione anabolism|up-regulation of glutathione biosynthetic process|up-regulation of glutathione anabolism|upregulation of glutathione formation|up regulation of glutathione biosynthesis|up regulation of glutathione synthesis|activation of glutathione biosynthetic process|positive regulation of glutathione biosynthesis|up-regulation of glutathione formation|up regulation of glutathione formation|positive regulation of glutathione synthesis|up-regulation of glutathione biosynthesis|positive regulation of glutathione anabolism|up regulation of glutathione biosynthetic process|upregulation of glutathione synthesis|activation of glutathione anabolism|positive regulation of glutathione formation|activation of glutathione synthesis|activation of glutathione biosynthesis|upregulation of glutathione biosynthesis|up-regulation of glutathione synthesis bf 2015-01-08T17:15:07Z biological_process owl:Class GO:2000792 biolink:NamedThing positive regulation of mesenchymal cell proliferation involved in lung development Any process that activates or increases the frequency, rate or extent of mesenchymal cell proliferation involved in lung development. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-24T01:53:56Z biological_process owl:Class GO:2000790 biolink:NamedThing regulation of mesenchymal cell proliferation involved in lung development Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation involved in lung development. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-24T01:53:50Z biological_process owl:Class GO:0001227 biolink:NamedThing DNA-binding transcription repressor activity, RNA polymerase II-specific A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl transcriptional repressor activity, metal ion regulated sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|distal enhancer DNA-binding transcription repressor activity, RNA polymerase II-specific|transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding|RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding|proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific|RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in negative regulation of transcription|transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding|RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|RNA polymerase II transcriptional repressor activity, metal ion regulated core promoter proximal region sequence-specific binding|metal ion regulated sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in negative regulation of transcription|sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription|transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding https://github.com/geneontology/go-ontology/issues/20253|https://github.com/geneontology/go-ontology/issues/16152|https://github.com/geneontology/go-ontology/issues/16131|https://github.com/geneontology/go-ontology/issues/16534 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. krc 2010-10-26T03:56:48Z GO:0001210|GO:0001078|GO:0001206|GO:0001214 molecular_function owl:Class GO:0140110 biolink:NamedThing transcription regulator activity A molecular function that controls the rate, timing and/or magnitude of gene transcription. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism. Genes are transcriptional units, and include bacterial operons. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13588 pg 2017-10-18T07:05:44Z molecular_function owl:Class GO:0071138 biolink:NamedThing alpha5-beta5-fibronectin-SFRP2 complex A protein complex that consists of an alpha5-beta5 integrin complex bound to fibronectin and secreted frizzled-related protein 2. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB5-FN-1-SFRP2 complex mah 2009-11-13T02:30:31Z cellular_component owl:Class GO:1901071 biolink:NamedThing glucosamine-containing compound metabolic process The chemical reactions and pathways involving glucosamine-containing compounds (glucosamines). tmpzr1t_l9r_go_relaxed.owl glucosamine-containing compound metabolism|glucosamines metabolic process|glucosamines metabolism bf 2012-07-02T03:18:04Z biological_process owl:Class GO:0006040 biolink:NamedThing amino sugar metabolic process The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl amino sugar metabolism|aminosaccharide metabolic process|aminosaccharide metabolism biological_process owl:Class GO:1990820 biolink:NamedThing response to mitotic DNA integrity checkpoint signaling A process that occurs in response to signals generated as a result of mitotic DNA integrity checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in mitotic DNA integrity checkpoint mah 2015-08-14T10:25:46Z biological_process owl:Class GO:0072414 biolink:NamedThing response to mitotic cell cycle checkpoint signaling A process that occurs in response to signals generated as a result of mitotic cell cycle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to mitotic cell cycle G1/S checkpoint signaling|response to signal involved in mitotic cell cycle G1/S checkpoint|mitotic G2/M transition checkpoint effector process|response to mitotic G2/M transition checkpoint signal|response to signal involved in mitotic G2/M transition checkpoint|response to signal involved in mitotic cell cycle checkpoint|mitotic cell cycle checkpoint effector process|mitotic cell cycle G1/S checkpoint effector process mah 2010-12-08T03:50:43Z GO:0072473|GO:0072455 biological_process owl:Class GO:0009071 biolink:NamedThing serine family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. tmpzr1t_l9r_go_relaxed.owl serine family amino acid breakdown|serine family amino acid degradation|serine family amino acid catabolism biological_process owl:Class GO:1901606 biolink:NamedThing alpha-amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of an alpha-amino acid. tmpzr1t_l9r_go_relaxed.owl alpha-amino acid catabolism|alpha-amino acid breakdown|alpha-amino acid degradation tb 2012-11-08T17:39:54Z biological_process owl:Class GO:0103078 biolink:NamedThing quercetin 3-rhamnoside 7-O-rhamnosyltransferase activity Catalysis of the reaction: H+ + quercetin 3-O-rhamnoside + UDP-L-rhamnose <=> quercetin-3-rhamnoside-7-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4162|RHEA:61184 molecular_function owl:Class GO:0110109 biolink:NamedThing negative regulation of imaginal disc-derived wing vein specification Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc-derived wing vein specification. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-05T13:55:37Z biological_process owl:Class GO:0035451 biolink:NamedThing extrinsic component of stromal side of plastid thylakoid membrane The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to stromal leaflet of plastid thylakoid membrane|peripheral to stromal side of plastid thylakoid membrane|extrinsic to stromal side of plastid thylakoid membrane bf 2010-04-16T10:18:01Z cellular_component owl:Class GO:0045145 biolink:NamedThing single-stranded DNA 5'-3' exodeoxyribonuclease activity Catalysis of the sequential cleavage of nucleotides (such as mononucleotides or dinucleotides) from a free 5' terminus of a single-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl ssDNA-specific 5'-3' exodeoxyribonuclease activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity molecular_function owl:Class GO:0008297 biolink:NamedThing single-stranded DNA exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a single-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl single-stranded DNA specific exodeoxyribonuclease activity|ssDNA-specific exodeoxyribonuclease activity molecular_function owl:Class GO:1900612 biolink:NamedThing F-9775B metabolic process The chemical reactions and pathways involving F-9775B. tmpzr1t_l9r_go_relaxed.owl F-9775B metabolism di 2012-05-15T07:03:01Z biological_process owl:Class GO:0030638 biolink:NamedThing polyketide metabolic process The chemical reactions and pathways involving polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones, which are themselves formed by repetitive head-to-tail addition of acetyl (or substituted acetyl) units indirectly derived from acetate (or a substituted acetate) by a mechanism similar to that for fatty acid biosynthesis but without the intermediate reductive steps. tmpzr1t_l9r_go_relaxed.owl polyketide metabolism biological_process owl:Class GO:0032770 biolink:NamedThing positive regulation of monooxygenase activity Any process that activates or increases the activity of a monooxygenase. tmpzr1t_l9r_go_relaxed.owl up-regulation of monooxygenase activity|activation of monooxygenase activity|stimulation of monooxygenase activity|up regulation of monooxygenase activity|upregulation of monooxygenase activity biological_process owl:Class GO:0032768 biolink:NamedThing regulation of monooxygenase activity Any process that modulates the activity of a monooxygenase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003169 biolink:NamedThing coronary vein morphogenesis The process in which the anatomical structures of veins of the heart are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T10:45:41Z biological_process owl:Class GO:0048845 biolink:NamedThing venous blood vessel morphogenesis The process in which the anatomical structures of venous blood vessels are generated and organized. Veins are blood vessels that transport blood from the body and its organs to the heart. tmpzr1t_l9r_go_relaxed.owl venous morphogenesis|vein morphogenesis biological_process owl:Class GO:0009800 biolink:NamedThing cinnamic acid biosynthetic process The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid. tmpzr1t_l9r_go_relaxed.owl phenylpropenoic acid biosynthetic process|phenylpropenoic acid biosynthesis|cinnamic acid synthesis|phenylacrylic acid biosynthesis|cinnamylic acid biosynthesis|cinnamic acid biosynthesis|phenylacrylic acid biosynthetic process|cinnamic acid anabolism|cinnamylic acid biosynthetic process|cinnamic acid formation biological_process owl:Class GO:0009803 biolink:NamedThing cinnamic acid metabolic process The chemical reactions and pathways involving cinnamic acid, 3-phenyl-2-propenoic acid. tmpzr1t_l9r_go_relaxed.owl phenylpropenoic acid metabolic process|cinnamylic acid metabolism|cinnamic acid metabolism|phenylacrylic acid metabolism|phenylpropenoic acid metabolism|phenylacrylic acid metabolic process|cinnamylic acid metabolic process biological_process owl:Class GO:0060069 biolink:NamedThing Wnt signaling pathway, regulating spindle positioning The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with the positioning of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl Wnt-activated signaling pathway, regulating spindle positioning|Wnt receptor signalling pathway, regulating spindle positioning|non-canonical Wnt signaling pathway|Wnt receptor signaling pathway, regulating spindle positioning biological_process owl:Class GO:0097728 biolink:NamedThing 9+0 motile cilium A motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme). tmpzr1t_l9r_go_relaxed.owl nodal cilium|motile 9+0 cilium This type of cilia may be present in solitary (classic nodal cilia in embryonic nodes) or in multiple copies (e.g. in the choroid plexus epithelium). pr 2016-09-27T15:24:37Z cellular_component owl:Class GO:0031514 biolink:NamedThing motile cilium A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell. tmpzr1t_l9r_go_relaxed.owl motile cilia|microtubule-based flagellum|motile primary cilium|motile primary cilia|motile secondary cilium|nodal cilium GO:0009434|GO:0031512 cellular_component owl:Class GO:0003849 biolink:NamedThing 3-deoxy-7-phosphoheptulonate synthase activity Catalysis of the reaction: D-erythrose 4-phosphate + H(2)O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate. tmpzr1t_l9r_go_relaxed.owl 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase activity|7-phospho-2-keto-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase (pyruvate-phosphorylating) activity|DHAP synthase activity|DAHP synthase activity|phospho-2-keto-3-deoxyheptonate aldolase activity|phospho-2-keto-3-deoxyheptanoate aldolase activity|DS-Mn activity|2-dehydro-3-deoxyphosphoheptonate aldolase activity|deoxy-D-arabino-heptulosonate-7-phosphate synthetase activity|2-keto-3-deoxy-D-arabino-heptonic acid 7-phosphate synthetase activity|KDPH synthetase activity|7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate|phospho-2-dehydro-3-deoxyheptonate aldolase activity|7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase (pyruvate-phosphorylating) activity|D-erythrose-4-phosphate-lyase (pyruvate-phosphorylating) activity|phospho-2-keto-3-deoxyheptonic aldolase activity|phosphoenolpyruvate:D-erythrose-4-phosphate C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)|2-dehydro-3-deoxy-phosphoheptonate aldolase activity|3-deoxy-D-arabino-heptolosonate-7-phosphate synthetase activity|KDPH synthase activity|DAH7-P synthase activity|3-deoxy-D-arabino-2-heptulosonic acid 7-phosphate synthetase activity|D-erythrose-4-phosphate-lyase activity|DS-Co activity|phospho-2-oxo-3-deoxyheptonate aldolase activity KEGG_REACTION:R01826|EC:2.5.1.54|MetaCyc:DAHPSYN-RXN|RHEA:14717 Note that this function was formerly EC:4.1.2.15. molecular_function owl:Class GO:0016765 biolink:NamedThing transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring alkyl or aryl groups, other than methyl groups EC:2.5.1.-|Reactome:R-HSA-4419978|Reactome:R-HSA-4755545|Reactome:R-HSA-6782893 GO:0016766 molecular_function owl:Class GO:0000019 biolink:NamedThing regulation of mitotic recombination Any process that modulates the frequency, rate or extent of DNA recombination during mitosis. tmpzr1t_l9r_go_relaxed.owl regulation of recombination within rDNA repeats biological_process owl:Class GO:0060384 biolink:NamedThing innervation The process in which a nerve invades a tissue and makes functional synaptic connection within the tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051726 biolink:NamedThing regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of progression through cell cycle|mitotic cell cycle arrest|arrest of mitotic cell cycle progression|tumor suppressor|cell cycle arrest|negative regulation of cell cycle arrest|cell cycle regulation|cell cycle regulator|cell cycle modulation|positive regulation of cell cycle arrest|control of cell cycle progression|regulation of cell cycle progression|modulation of cell cycle progression|regulation of cell cycle arrest GO:0071157|GO:0071156|GO:0071158|GO:0071850|GO:0007050|GO:0000074 biological_process owl:Class GO:0099145 biolink:NamedThing regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane Any process that modulates the frequency, rate or extent of exocytic fusion of neurotransmitter receptor containing vesicles into the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-06-09T18:49:26Z biological_process owl:Class GO:0051223 biolink:NamedThing regulation of protein transport Any process that modulates the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016087 biolink:NamedThing ecdysiostatic hormone activity The action characteristic of ecdysiostatic hormone, a peptide hormone that inhibits ecdysone secretion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005184 biolink:NamedThing neuropeptide hormone activity The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones. tmpzr1t_l9r_go_relaxed.owl neurohormone Wikipedia:Neurohormone molecular_function owl:Class GO:1901794 biolink:NamedThing 3-(3-hydroxyphenyl)propanoate catabolic process The chemical reactions and pathways resulting in the breakdown of 3-(3-hydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(3-hydroxyphenyl)propanoate degradation|3-(3-hydroxyphenyl)propanoate breakdown|3-(3-hydroxyphenyl)propanoate catabolism yaf 2013-01-16T11:47:17Z biological_process owl:Class GO:1904859 biolink:NamedThing positive regulation of endothelial cell chemotaxis to vascular endothelial growth factor Any process that activates or increases the frequency, rate or extent of endothelial cell chemotaxis to vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl upregulation of endothelial cell chemotaxis to vascular endothelial growth factor|activation of endothelial cell chemotaxis to vascular endothelial growth factor|up regulation of endothelial cell chemotaxis to vascular endothelial growth factor|up-regulation of endothelial cell chemotaxis to vascular endothelial growth factor rph 2015-12-16T11:48:00Z biological_process owl:Class GO:0050921 biolink:NamedThing positive regulation of chemotaxis Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient. tmpzr1t_l9r_go_relaxed.owl activation of chemotaxis|up regulation of chemotaxis|up-regulation of chemotaxis|upregulation of chemotaxis|stimulation of chemotaxis biological_process owl:Class GO:0051263 biolink:NamedThing microcin E492 biosynthetic process by siderophore ester modification of peptidyl-serine The modification of serine to N-[5-(6-O-seryl-beta-glucosyl)-2,3-dihydroxybenzoyl]-O-[N-(2,3-dihydroxybenzoyl)-O-[N-(2,3-dihydroxybenzoyl)seryl]seryl]serine as found in microcin E492 produced from the mceA gene in plasmid pJAM229 of the E. coli VCS257 strain and the K. pneumoniae RYC492 strain. tmpzr1t_l9r_go_relaxed.owl microcin E492 anabolism by siderophore ester modification of peptidyl-serine|microcin E492 synthesis by siderophore ester modification of peptidyl-serine|microcin E492 formation by siderophore ester modification of peptidyl-serine RESID:AA0374 biological_process owl:Class GO:0018350 biolink:NamedThing protein esterification The addition of an ester group to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid esterification biological_process owl:Class GO:0046947 biolink:NamedThing hydroxylysine biosynthetic process The chemical reactions and pathways resulting in the formation of hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid. tmpzr1t_l9r_go_relaxed.owl hydroxylysine biosynthesis|hydroxylysine anabolism|hydroxylysine synthesis|hydroxylysine formation biological_process owl:Class GO:0046946 biolink:NamedThing hydroxylysine metabolic process The chemical reactions and pathways involving hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid. Hydroxylysine is found in collagen and commonly has galactose and then glucose added sequentially by glycosyltransferases. tmpzr1t_l9r_go_relaxed.owl hydroxylysine metabolism biological_process owl:Class GO:0008730 biolink:NamedThing L(+)-tartrate dehydratase activity Catalysis of the reaction: L-tartrate = H(2)O + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl tartaric acid dehydrase activity|L-(+)-tartaric acid dehydratase activity|tartrate dehydratase activity|L-tartrate dehydratase activity|(R,R)-tartrate hydro-lyase (oxaloacetate-forming)|(R,R)-tartrate hydro-lyase activity KEGG_REACTION:R00339|RHEA:15413|EC:4.2.1.32|MetaCyc:LTARTDEHYDRA-RXN molecular_function owl:Class GO:1903923 biolink:NamedThing positive regulation of protein processing in phagocytic vesicle Any process that activates or increases the frequency, rate or extent of protein processing in phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl up regulation of protein processing in phagocytic vesicle|up regulation of protein processing in phagosome|up-regulation of peptidolysis during protein maturation in phagosome|activation of protein maturation by peptide bond cleavage in phagocytic vesicle|upregulation of peptidolysis during protein maturation in phagocytic vesicle|up regulation of protein maturation by peptide bond cleavage in phagosome|activation of protein maturation by proteolysis in phagosome|up-regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|upregulation of protein maturation by proteolysis in phagosome|upregulation of protein maturation by peptide bond hydrolysis in phagosome|positive regulation of protein maturation by peptide bond cleavage in phagosome|positive regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|activation of protein maturation by proteolysis in phagocytic vesicle|up-regulation of protein maturation by proteolysis in phagosome|activation of protein processing in phagocytic vesicle|positive regulation of protein processing in phagosome|activation of peptidolysis during protein maturation in phagosome|upregulation of protein processing in phagosome|up regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|activation of protein processing in phagosome|up-regulation of protein maturation by proteolysis in phagocytic vesicle|positive regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|upregulation of protein maturation by peptide bond cleavage in phagosome|up-regulation of protein processing in phagosome|up-regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|upregulation of peptidolysis during protein maturation in phagosome|upregulation of protein maturation by proteolysis in phagocytic vesicle|activation of peptidolysis during protein maturation in phagocytic vesicle|upregulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|up regulation of protein maturation by proteolysis in phagocytic vesicle|positive regulation of protein maturation by proteolysis in phagocytic vesicle|up-regulation of peptidolysis during protein maturation in phagocytic vesicle|upregulation of protein maturation by peptide bond cleavage in phagocytic vesicle|up regulation of protein maturation by peptide bond hydrolysis in phagosome|up-regulation of protein maturation by peptide bond hydrolysis in phagosome|up-regulation of protein maturation by peptide bond cleavage in phagosome|activation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|positive regulation of protein maturation by peptide bond hydrolysis in phagosome|positive regulation of peptidolysis during protein maturation in phagosome|upregulation of protein processing in phagocytic vesicle|positive regulation of peptidolysis during protein maturation in phagocytic vesicle|up regulation of protein maturation by proteolysis in phagosome|activation of protein maturation by peptide bond cleavage in phagosome|up regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|up-regulation of protein processing in phagocytic vesicle|activation of protein maturation by peptide bond hydrolysis in phagosome|positive regulation of protein maturation by proteolysis in phagosome|up regulation of peptidolysis during protein maturation in phagocytic vesicle|up regulation of peptidolysis during protein maturation in phagosome als 2015-02-10T11:17:14Z biological_process owl:Class GO:0046398 biolink:NamedThing UDP-glucuronate metabolic process The chemical reactions and pathways involving UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronate metabolism biological_process owl:Class GO:2000565 biolink:NamedThing negative regulation of CD8-positive, alpha-beta T cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:03:19Z biological_process owl:Class GO:2001186 biolink:NamedThing negative regulation of CD8-positive, alpha-beta T cell activation Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-03T01:16:57Z biological_process owl:Class GO:0015108 biolink:NamedThing chloride transmembrane transporter activity Enables the transfer of chloride ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl chloride ABC transporter|chloride transporting ATPase activity|chloride-transporting ATPase activity|ATPase-coupled chloride transmembrane transporter activity|ATP-dependent chloride transmembrane transporter activity|chloride ion transmembrane transporter activity RHEA:29823|Reactome:R-HSA-5678863|Reactome:R-HSA-5678992|Reactome:R-HSA-5678822|MetaCyc:3.6.3.11-RXN GO:0008555 molecular_function owl:Class GO:0043225 biolink:NamedThing ATPase-coupled inorganic anion transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + inorganic anion(out) = ADP + phosphate + inorganic anion(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent anion transmembrane transporter activity|anion ABC transporter|anion transmembrane-transporting ATPase activity|anion-transporting ATPase activity|ATPase-coupled anion transmembrane transporter activity Reactome:R-HSA-5690340|Reactome:R-HSA-1454916 molecular_function owl:Class GO:0051581 biolink:NamedThing negative regulation of neurotransmitter uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a neurotransmitter into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl down regulation of neurotransmitter uptake|negative regulation of neurotransmitter import|downregulation of neurotransmitter uptake|down-regulation of neurotransmitter uptake biological_process owl:Class GO:1900656 biolink:NamedThing negative regulation of diorcinol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of diorcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of diorcinol biosynthesis|inhibition of diorcinol synthesis|down regulation of diorcinol anabolism|down-regulation of diorcinol formation|negative regulation of diorcinol synthesis|down-regulation of diorcinol synthesis|down regulation of diorcinol synthesis|down-regulation of diorcinol biosynthetic process|negative regulation of diorcinol anabolism|down-regulation of diorcinol anabolism|inhibition of diorcinol biosynthesis|downregulation of diorcinol synthesis|downregulation of diorcinol formation|downregulation of diorcinol biosynthetic process|down regulation of diorcinol formation|inhibition of diorcinol formation|down regulation of diorcinol biosynthetic process|downregulation of diorcinol anabolism|downregulation of diorcinol biosynthesis|inhibition of diorcinol biosynthetic process|negative regulation of diorcinol formation|negative regulation of diorcinol biosynthesis|inhibition of diorcinol anabolism|down regulation of diorcinol biosynthesis di 2012-05-22T04:09:01Z biological_process owl:Class GO:0031327 biolink:NamedThing negative regulation of cellular biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular biosynthetic process|inhibition of cellular biosynthetic process|downregulation of cellular biosynthetic process|negative regulation of cellular anabolism|down regulation of cellular biosynthetic process|negative regulation of cellular formation|negative regulation of cellular biosynthesis|negative regulation of cellular synthesis biological_process owl:Class GO:1904984 biolink:NamedThing regulation of quinolinate biosynthetic process Any process that modulates the frequency, rate or extent of quinolinate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of quinolinate formation|regulation of quinolinate anabolism|regulation of quinolinate synthesis|regulation of quinolinate biosynthesis bf 2016-02-29T15:54:12Z biological_process owl:Class GO:0007556 biolink:NamedThing regulation of juvenile hormone metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving juvenile hormone. tmpzr1t_l9r_go_relaxed.owl regulation of juvenile hormone metabolism biological_process owl:Class GO:0090453 biolink:NamedThing aspartate transmembrane import into vacuole The directed movement of aspartate into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar aspartate import tb 2012-09-24T14:12:46Z biological_process owl:Class GO:0034487 biolink:NamedThing vacuolar amino acid transmembrane transport The process in which an amino acid is transported from one side of the vacuolar membrane to the other. tmpzr1t_l9r_go_relaxed.owl vacuolar amino acid membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0098554 biolink:NamedThing cytoplasmic side of endoplasmic reticulum membrane The side (leaflet) of the plasma membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:09:47Z cellular_component owl:Class GO:0098562 biolink:NamedThing cytoplasmic side of membrane The side of a membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-12T11:21:30Z cellular_component owl:Class GO:1900727 biolink:NamedThing osmoregulated periplasmic glucan biosynthetic process The chemical reactions and pathways resulting in the formation of osmoregulated periplasmic glucan. tmpzr1t_l9r_go_relaxed.owl osmoregulated periplasmic glucan anabolism|osmoregulated periplasmic glucan formation|osmoregulated periplasmic glucan biosynthesis|osmoregulated periplasmic glucan synthesis jl 2012-05-24T03:19:02Z biological_process owl:Class GO:0009250 biolink:NamedThing glucan biosynthetic process The chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. tmpzr1t_l9r_go_relaxed.owl glucan synthesis|glucan formation|glucan biosynthesis|glucan anabolism biological_process owl:Class GO:1901461 biolink:NamedThing negative regulation of response to formic acid Any process that stops, prevents or reduces the frequency, rate or extent of response to formic acid. tmpzr1t_l9r_go_relaxed.owl downregulation of response to formic acid|down regulation of response to formic acid|inhibition of response to formic acid|down-regulation of response to formic acid tt 2012-10-02T14:29:02Z biological_process owl:Class GO:1901460 biolink:NamedThing regulation of response to formic acid Any process that modulates the frequency, rate or extent of response to formic acid. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:27:54Z biological_process owl:Class GO:0015742 biolink:NamedThing alpha-ketoglutarate transport The directed movement of alpha-ketoglutarate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate transport|mitochondrial alpha-ketoglutarate/malate transport biological_process owl:Class GO:0005847 biolink:NamedThing mRNA cleavage and polyadenylation specificity factor complex A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal. tmpzr1t_l9r_go_relaxed.owl CPF complex|CPSF complex|CFII complex|cleavage and polyadenylylation specificity factor activity cellular_component owl:Class GO:0005849 biolink:NamedThing mRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035540 biolink:NamedThing positive regulation of SNARE complex disassembly Any process that increases the frequency, rate or extent of disassembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-10T01:42:21Z biological_process owl:Class GO:0002600 biolink:NamedThing positive regulation of antigen processing and presentation of lipid antigen via MHC class Ib Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl up-regulation of antigen processing and presentation of lipid antigen via MHC class Ib|stimulation of antigen processing and presentation of lipid antigen via MHC class Ib|upregulation of antigen processing and presentation of lipid antigen via MHC class Ib|positive regulation of lipid antigen processing and presentation via MHC class Ib|activation of antigen processing and presentation of lipid antigen via MHC class Ib|up regulation of antigen processing and presentation of lipid antigen via MHC class Ib biological_process owl:Class GO:0002598 biolink:NamedThing regulation of antigen processing and presentation of lipid antigen via MHC class Ib Any process that modulates the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl regulation of lipid antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0035976 biolink:NamedThing transcription factor AP-1 complex A heterodimeric transcription factor complex composed of proteins from the c-Fos, c-Jun, activating transcription factor (ATF) or JDP families. The subunits contain a basic leucine zipper (bZIP) domain that is essential for dimerization and DNA binding. Jun-Fos heterodimers bind preferentially to a heptamer consensus sequence (TPA responsive element (TRE)), whereas Jun-ATF dimers bind the cyclic AMP responsive element (CRE) to regulate transcription of target genes. tmpzr1t_l9r_go_relaxed.owl AP1 complex|AP-1 complex|transcription factor AP1 complex|Activating protein 1 complex bf 2011-08-17T10:57:51Z cellular_component owl:Class GO:0090575 biolink:NamedThing RNA polymerase II transcription regulator complex A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription factor complex tb 2014-05-09T14:04:37Z cellular_component owl:Class GO:1904810 biolink:NamedThing negative regulation of dense core granule transport Any process that stops, prevents or reduces the frequency, rate or extent of dense core granule transport. tmpzr1t_l9r_go_relaxed.owl downregulation of dense core granule transport|downregulation of dense core vesicle transport|down regulation of dense core vesicle transport|down regulation of dense core granule transport|inhibition of dense core vesicle transport|down-regulation of dense core granule transport|negative regulation of dense core vesicle transport|inhibition of dense core granule transport|down-regulation of dense core vesicle transport cdk-5 in C.elegans (G5ECH7) in PMID:22699897 (inferred from mutant phenotype). es 2015-11-11T10:40:18Z biological_process owl:Class GO:1904809 biolink:NamedThing regulation of dense core granule transport Any process that modulates the frequency, rate or extent of dense core granule transport. tmpzr1t_l9r_go_relaxed.owl regulation of dense core vesicle transport cdk-5 in C.elegans (G5ECH7) in PMID:22699897 (inferred from mutant phenotype). es 2015-11-11T10:40:10Z biological_process owl:Class GO:0038089 biolink:NamedThing positive regulation of cell migration by vascular endothelial growth factor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a receptor on the surface of a cell, which activates or increases the frequency, rate or extent of the orderly movement of a cell from one site to another. tmpzr1t_l9r_go_relaxed.owl VEGF-induced cell migration|VEGF-A-induced cell migration|positive regulation of cell migration by VEGF signaling pathway|positive regulation of cell migration by vascular endothelial growth factor signalling pathway bf 2012-02-02T03:40:13Z biological_process owl:Class GO:0038084 biolink:NamedThing vascular endothelial growth factor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGF-activated signaling pathway|vascular endothelial growth factor signalling pathway|VEGF signaling In GO, a gene product with 'vascular endothelial growth factor-activated receptor activity ; GO:0005021' necessarily binds VEGF to transduce a signal. To represent cross-talk between ligands and receptors, signaling pathways in GO are starting to be named after the receptor and/or the signal. GO:0038084 is for annotation of any pathway in which the ligand VEGF binds and activates any cell surface receptor (VEGFR, PDGFR etc.). For annotation of signaling pathways where a VEGFR binds one of its physiological ligands (VEGF or an alternative growth factor), consider 'vascular endothelial growth factor receptor signaling pathway ; GO:0048010'. bf 2012-02-01T02:27:32Z biological_process owl:Class GO:2000521 biolink:NamedThing negative regulation of immunological synapse formation Any process that stops, prevents or reduces the frequency, rate or extent of immunological synapse formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of formation of immunological synapse ebc 2011-03-23T10:18:19Z biological_process owl:Class GO:0051250 biolink:NamedThing negative regulation of lymphocyte activation Any process that stops, prevents, or reduces the frequency, rate or extent of lymphocyte activation. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphocyte activation|down regulation of lymphocyte activation|down-regulation of lymphocyte activation|inhibition of lymphocyte activation biological_process owl:Class GO:0051001 biolink:NamedThing negative regulation of nitric-oxide synthase activity Any process that stops or reduces the activity of the enzyme nitric-oxide synthase. tmpzr1t_l9r_go_relaxed.owl inhibition of nitric-oxide synthase activity|nitric-oxide synthase inhibitor|negative regulation of NOS activity|NOS inhibitor|down-regulation of nitric-oxide synthase activity|downregulation of nitric-oxide synthase activity|down regulation of nitric-oxide synthase activity biological_process owl:Class GO:0048550 biolink:NamedThing negative regulation of pinocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of pinocytosis. Pinocytosis is the process in which cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes. tmpzr1t_l9r_go_relaxed.owl down-regulation of pinocytosis|inhibition of pinocytosis|down regulation of pinocytosis|downregulation of pinocytosis biological_process owl:Class GO:0048548 biolink:NamedThing regulation of pinocytosis Any process that modulates the frequency, rate or extent of pinocytosis. Pinocytosis is the process in which cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015871 biolink:NamedThing choline transport The directed movement of choline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015695 biolink:NamedThing organic cation transport The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901772 biolink:NamedThing lincomycin metabolic process The chemical reactions and pathways involving lincomycin. tmpzr1t_l9r_go_relaxed.owl lincomycin metabolism yaf 2013-01-15T11:53:52Z biological_process owl:Class GO:0046483 biolink:NamedThing heterocycle metabolic process The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). tmpzr1t_l9r_go_relaxed.owl heterocycle metabolism biological_process owl:Class GO:0006076 biolink:NamedThing (1->3)-beta-D-glucan catabolic process The chemical reactions and pathways resulting in the breakdown of (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-glucan catabolic process|1,3-beta-glucan degradation|beta-1,3 glucan catabolic process|beta-1,3 glucan degradation|1,3-beta-glucan breakdown|beta-1,3 glucan breakdown|beta-1,3 glucan catabolism|1,3-beta-glucan catabolism biological_process owl:Class GO:0051275 biolink:NamedThing beta-glucan catabolic process The chemical reactions and pathways resulting in the breakdown of beta-glucans. tmpzr1t_l9r_go_relaxed.owl beta-glucan degradation|beta-glucan catabolism|beta-glucan breakdown biological_process owl:Class GO:0060883 biolink:NamedThing regulation of basement membrane disassembly involved in semicircular canal fusion by cell communication Any process that mediates interactions between a cell and its surroundings that modulates of the rate, frequency or extent of basement membrane disassembly involved in semicircular canal fusion. tmpzr1t_l9r_go_relaxed.owl regulation of basal lamina disassembly involved in semicircular canal fusion by cell communication dph 2009-08-13T11:31:56Z biological_process owl:Class GO:0110011 biolink:NamedThing regulation of basement membrane organization Any process that modulates the frequency, rate or extent of the assembly, disassembly or arrangement of constituent parts of the basement membrane. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0003363 biolink:NamedThing lamellipodium assembly involved in ameboidal cell migration Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell that contributes to the directed self propelled movement of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T04:38:04Z biological_process owl:Class GO:0030032 biolink:NamedThing lamellipodium assembly Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. tmpzr1t_l9r_go_relaxed.owl lamellipodium biogenesis|lamellipodium biosynthesis|lamellipodium formation biological_process owl:Class GO:0009436 biolink:NamedThing glyoxylate catabolic process The chemical reactions and pathways resulting in the breakdown of glyoxylate, the anion of glyoxylic acid, HOC-COOH. tmpzr1t_l9r_go_relaxed.owl glyoxylate degradation|glyoxylate breakdown|glyoxylate catabolism MetaCyc:GLYOXDEG-PWY biological_process owl:Class GO:0046185 biolink:NamedThing aldehyde catabolic process The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O. tmpzr1t_l9r_go_relaxed.owl aldehyde breakdown|aldehyde catabolism|aldehyde degradation biological_process owl:Class GO:0097063 biolink:NamedThing cadmium ion sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of cadmium (Cd++). tmpzr1t_l9r_go_relaxed.owl pr 2011-06-08T09:46:14Z molecular_function owl:Class GO:0140299 biolink:NamedThing small molecule sensor activity Binding to a small molecule and eliciting a change in the protein's activity in response to the intracellular level of that small molecule. tmpzr1t_l9r_go_relaxed.owl small molecular sensor activity pg 2018-12-10T14:30:28Z molecular_function owl:Class GO:0009609 biolink:NamedThing response to symbiotic bacterium Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism. tmpzr1t_l9r_go_relaxed.owl response to symbiotic bacteria biological_process owl:Class GO:0009608 biolink:NamedThing response to symbiont Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiont, an organism living with an organism of a different species in close physical association. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of host to symbiont biological_process owl:Class GO:0033026 biolink:NamedThing negative regulation of mast cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of mast cell apoptosis|inhibition of mast cell apoptosis|downregulation of mast cell apoptosis|down-regulation of mast cell apoptosis|negative regulation of mast cell apoptosis biological_process owl:Class GO:0002683 biolink:NamedThing negative regulation of immune system process Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process. tmpzr1t_l9r_go_relaxed.owl downregulation of immune system process|down regulation of immune system process|inhibition of immune system process|down-regulation of immune system process biological_process owl:Class GO:0018490 biolink:NamedThing 4-hydroxyphenylpyruvate oxidase activity Catalysis of the reaction: 2 (4-hydroxyphenyl)pyruvate + O(2) = 2 (4-hydroxyphenyl)acetate + 2 CO(2). tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylpyruvate:oxygen oxidoreductase (decarboxylating) RHEA:17197|UM-BBD_reactionID:r0299|MetaCyc:1.2.3.13-RXN|KEGG_REACTION:R00042|EC:1.2.3.13 molecular_function owl:Class GO:0002660 biolink:NamedThing positive regulation of peripheral tolerance induction Any process that activates or increases the frequency, rate, or extent of peripheral tolerance induction. tmpzr1t_l9r_go_relaxed.owl up-regulation of peripheral tolerance induction|upregulation of peripheral tolerance induction|up regulation of peripheral tolerance induction|stimulation of peripheral tolerance induction|activation of peripheral tolerance induction biological_process owl:Class GO:0002654 biolink:NamedThing positive regulation of tolerance induction dependent upon immune response Any process that activates or increases the frequency, rate, or extent of tolerance induction dependent upon immune response. tmpzr1t_l9r_go_relaxed.owl up regulation of tolerance induction dependent upon immune response|activation of tolerance induction dependent upon immune response|upregulation of tolerance induction dependent upon immune response|positive regulation of immune response-dependent tolerance induction|up-regulation of tolerance induction dependent upon immune response|stimulation of tolerance induction dependent upon immune response biological_process owl:Class GO:0031644 biolink:NamedThing regulation of nervous system process Any process that modulates the frequency, rate or extent of a neurophysiological process, an organ system process carried out by any of the organs or tissues of the nervous system. tmpzr1t_l9r_go_relaxed.owl regulation of neurological system process|regulation of neurological process|regulation of neurophysiological process biological_process owl:Class GO:0044057 biolink:NamedThing regulation of system process Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by any of the organs or tissues in an organ system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902700 biolink:NamedThing pentose catabolic process to butan-1-ol The chemical reactions and pathways resulting in the breakdown of pentose to butan-1-ol. tmpzr1t_l9r_go_relaxed.owl pentose degradation to butan-1-ol|pentose catabolic process to butanol|pentose breakdown to butan-1-ol|pentose catabolic process to 1-butanol|pentose catabolism to butan-1-ol|solventogenesis tb 2014-02-19T18:28:47Z GO:1990290 biological_process owl:Class GO:0071270 biolink:NamedThing 1-butanol metabolic process The chemical reactions and pathways involving 1-butanol, an alkyl primary alcohol with the formula C4H10O. tmpzr1t_l9r_go_relaxed.owl 1-butanol metabolism|butanol metabolic process|butan-1-ol metabolic process mah 2009-12-10T10:23:11Z biological_process owl:Class GO:0019819 biolink:NamedThing P1 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P1 peroxisomes are distinguished from the other subforms on the bases of buoyant density and protein content; they contain fewer peroxisomal proteins than the other subforms. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P2 peroxisome ; GO:0019820', 'P3 peroxisome ; GO:0019821', 'P4 peroxisome ; GO:0019822', 'P5 peroxisome ; GO:0019823', and 'P6 peroxisome ; GO:0019824'. cellular_component owl:Class GO:0005777 biolink:NamedThing peroxisome A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. tmpzr1t_l9r_go_relaxed.owl peroxisomal|peroxisome vesicle Wikipedia:Peroxisome|NIF_Subcellular:sao499555322 GO:0019818 cellular_component owl:Class GO:0018309 biolink:NamedThing protein-FMN linkage The formation of a linkage between a protein amino acid and flavin mononucleotide (FMN). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034767 biolink:NamedThing positive regulation of ion transmembrane transport Any process that activates or increases the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl stimulation of transmembrane ion transport|upregulation of transmembrane ion transport|activation of transmembrane ion transport|up-regulation of transmembrane ion transport|up regulation of transmembrane ion transport|positive regulation of ion membrane transport|positive regulation of transmembrane ion transport biological_process owl:Class GO:0043270 biolink:NamedThing positive regulation of ion transport Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of ion transport|up-regulation of ion transport|up regulation of ion transport|activation of ion transport|upregulation of ion transport biological_process owl:Class GO:1900835 biolink:NamedThing negative regulation of emericellin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of emericellin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of emericellin biosynthetic process|downregulation of emericellin biosynthetic process|down regulation of emericellin biosynthetic process di 2012-06-07T09:32:24Z biological_process owl:Class GO:1900377 biolink:NamedThing negative regulation of secondary metabolite biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of secondary metabolite biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of secondary metabolite biosynthetic process|negative regulation of secondary metabolite biosynthesis|inhibition of secondary metabolite biosynthetic process|down regulation of secondary metabolite biosynthetic process|downregulation of secondary metabolite biosynthesis|downregulation of secondary metabolite biosynthetic process|down-regulation of secondary metabolite biosynthesis|inhibition of secondary metabolite biosynthesis|down regulation of secondary metabolite biosynthesis di 2012-04-17T01:55:32Z biological_process owl:Class GO:0070949 biolink:NamedThing regulation of neutrophil mediated killing of symbiont cell Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a symbiont cell, the directed killing of a symbiont target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-01T02:14:36Z biological_process owl:Class GO:0002831 biolink:NamedThing regulation of response to biotic stimulus Any process that modulates the frequency, rate, or extent of a response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:1904480 biolink:NamedThing positive regulation of intestinal absorption Any process that activates or increases the frequency, rate or extent of intestinal absorption. tmpzr1t_l9r_go_relaxed.owl activation of intestinal absorption|upregulation of intestinal absorption|up regulation of intestinal absorption|up-regulation of intestinal absorption rl 2015-07-13T15:59:00Z biological_process owl:Class GO:0060456 biolink:NamedThing positive regulation of digestive system process Any process that increases the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045666 biolink:NamedThing positive regulation of neuron differentiation Any process that activates or increases the frequency, rate or extent of neuron differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of neuron differentiation|up regulation of neuron differentiation|activation of neuron differentiation|upregulation of neuron differentiation|up-regulation of neuron differentiation biological_process owl:Class GO:0003674 biolink:NamedThing molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. tmpzr1t_l9r_go_relaxed.owl molecular function Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. GO:0005554 molecular_function owl:Class GO:1900512 biolink:NamedThing regulation of starch utilization system complex assembly Any process that modulates the frequency, rate or extent of starch utilization system complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of SUS complex assembly|regulation of assembly of starch utilization system complex tt 2012-05-02T04:06:44Z biological_process owl:Class GO:0043254 biolink:NamedThing regulation of protein-containing complex assembly Any process that modulates the frequency, rate or extent of protein complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of protein complex assembly biological_process owl:Class GO:0102434 biolink:NamedThing pterin-4alpha-carbinolamine dehydratase activity Catalysis of the reaction: a 10-formyltetrahydrofolate-4a-carbinolamine = H2O + a 10-formyldihydrofolate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13908 molecular_function owl:Class GO:0061099 biolink:NamedThing negative regulation of protein tyrosine kinase activity Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:34:53Z biological_process owl:Class GO:0000414 biolink:NamedThing regulation of histone H3-K36 methylation Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051792 biolink:NamedThing medium-chain fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of any fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium chain fatty acid biosynthesis|medium chain fatty acid biosynthetic process|medium-chain fatty acid biosynthesis|medium-chain fatty acid formation|medium-chain fatty acid anabolism|medium-chain fatty acid synthesis biological_process owl:Class GO:0006633 biolink:NamedThing fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. tmpzr1t_l9r_go_relaxed.owl fatty acid anabolism|fatty acid formation|fatty acid biosynthesis|fatty acid synthesis MetaCyc:PWY-4381|Wikipedia:Fatty_acid_synthesis|MetaCyc:PWY-5156|MetaCyc:FASYN-INITIAL-PWY GO:0000037 biological_process owl:Class GO:1904664 biolink:NamedThing negative regulation of N-terminal peptidyl-methionine acetylation Any process that stops, prevents or reduces the frequency, rate or extent of N-terminal peptidyl-methionine acetylation. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-07T19:18:56Z biological_process owl:Class GO:0034642 biolink:NamedThing mitochondrion migration along actin filament The directed movement of a mitochondrion along a microfilament, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl mitochondrial migration, actin-mediated|mitochondrial migration along microfilament|mitochondrion migration along microfilament|mitochondrion transport along actin filament|mitochondrial migration along actin filament biological_process owl:Class GO:0099515 biolink:NamedThing actin filament-based transport The transport of organelles or other particles from one location in the cell to another along actin filaments. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-27T10:56:08Z biological_process owl:Class GO:0062038 biolink:NamedThing positive regulation of pheromone response MAPK cascade Any process that activates or increases the frequency, rate or extent of a pheromone response MAPK cascade. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-01T13:00:56Z biological_process owl:Class GO:1904413 biolink:NamedThing negative regulation of cardiac ventricle development Any process that stops, prevents or reduces the frequency, rate or extent of cardiac ventricle development. tmpzr1t_l9r_go_relaxed.owl downregulation of cardiac ventricle development|inhibition of cardiac ventricle development|down regulation of cardiac ventricle development|down-regulation of cardiac ventricle development sl 2015-06-25T19:52:21Z biological_process owl:Class GO:0031279 biolink:NamedThing regulation of cyclase activity Any process that modulates the frequency, rate or extent of cyclase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022870 biolink:NamedThing protein-N(PI)-phosphohistidine-mannose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + mannose(out) = protein histidine + mannose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl mannose PTS transporter activity molecular_function owl:Class GO:0015578 biolink:NamedThing mannose transmembrane transporter activity Enables the transfer of mannose from one side of a membrane to the other. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. tmpzr1t_l9r_go_relaxed.owl mannose permease activity GO:0015589 molecular_function owl:Class GO:0044217 biolink:NamedThing other organism part Any constituent part of a secondary organism with which the first organism is interacting. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. jl 2009-11-12T01:18:21Z cellular_component owl:Class GO:0019990 biolink:NamedThing pteridine catabolic process The chemical reactions and pathways resulting in the breakdown of pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group. tmpzr1t_l9r_go_relaxed.owl pteridine breakdown|pteridine degradation|pteridine catabolism biological_process owl:Class GO:0042560 biolink:NamedThing pteridine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. tmpzr1t_l9r_go_relaxed.owl pteridine and derivative catabolic process|pterin catabolic process|pteridine-containing compound degradation|pteridine-containing compound catabolism|pterin catabolism|pteridine and derivative catabolism|pteridine-containing compound breakdown biological_process owl:Class GO:0001097 biolink:NamedThing TFIIH-class transcription factor complex binding Binding to a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl TFIIH-class transcription factor binding krc 2010-10-28T02:51:41Z molecular_function owl:Class GO:0001091 biolink:NamedThing RNA polymerase II general transcription initiation factor binding Binding to a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II basal transcription factor binding krc 2010-10-28T02:30:02Z molecular_function owl:Class GO:1904486 biolink:NamedThing response to 17alpha-ethynylestradiol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 17alpha-ethynylestradiol stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-07-15T22:31:36Z biological_process owl:Class GO:1902637 biolink:NamedThing neural crest cell differentiation involved in thymus development Any neural crest cell differentiation that is involved in thymus development. tmpzr1t_l9r_go_relaxed.owl pr 2014-01-21T10:03:20Z biological_process owl:Class GO:0014033 biolink:NamedThing neural crest cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neural crest cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990901 biolink:NamedThing old cell pole The cell pole distal from the most recent cell division. tmpzr1t_l9r_go_relaxed.owl pr 2015-11-17T16:42:16Z cellular_component owl:Class GO:0060187 biolink:NamedThing cell pole Either of two different areas at opposite ends of an axis of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term differs from 'cell tip ; GO:0051286' in that it is applicable to a broad range of cell shapes including spherical and cuboidal. cellular_component owl:Class GO:0034064 biolink:NamedThing Tor2-Mei2-Ste11 complex A protein complex that contains the transcription factor Ste11 and the RNA binding protein Mei2; involved in regulation of conjugation in fission yeast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0075019 biolink:NamedThing negative regulation of appressorium formation Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont appressorium formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of appressorium formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0080154 biolink:NamedThing regulation of fertilization Any process that modulates the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy). tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-01T03:44:27Z biological_process owl:Class GO:0032943 biolink:NamedThing mononuclear cell proliferation The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form. tmpzr1t_l9r_go_relaxed.owl PBMC proliferation|peripheral blood mononuclear cell proliferation biological_process owl:Class GO:0070661 biolink:NamedThing leukocyte proliferation The expansion of a leukocyte population by cell division. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T05:25:28Z biological_process owl:Class GO:0090086 biolink:NamedThing negative regulation of protein deubiquitination Any process that decreases the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin groups from a protein. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:18:06Z biological_process owl:Class GO:0090085 biolink:NamedThing regulation of protein deubiquitination Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin groups from a protein. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:16:32Z biological_process owl:Class GO:0034223 biolink:NamedThing regulation of ascospore wall chitin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ascospore wall chitin. tmpzr1t_l9r_go_relaxed.owl regulation of ascospore wall chitin synthesis|regulation of ascospore wall chitin formation|regulation of ascospore wall chitin anabolism|regulation of ascospore wall chitin biosynthesis biological_process owl:Class GO:0032995 biolink:NamedThing regulation of fungal-type cell wall biogenesis Any process that modulates the process in which a cell wall is synthesized, aggregates, and bonds together. The fungal-type cell wall contains beta-glucan and may contain chitin. tmpzr1t_l9r_go_relaxed.owl regulation of chitin- and beta-glucan-containing cell wall biogenesis biological_process owl:Class GO:0070686 biolink:NamedThing macropinocytic cup membrane The portion of the plasma membrane surrounding a macropinocytic cup. tmpzr1t_l9r_go_relaxed.owl crown membrane mah 2009-06-03T10:52:25Z cellular_component owl:Class GO:0031253 biolink:NamedThing cell projection membrane The portion of the plasma membrane surrounding a plasma membrane bounded cell surface projection. tmpzr1t_l9r_go_relaxed.owl membrane extension|membrane projection cellular_component owl:Class GO:0042082 biolink:NamedThing GSI anchor biosynthetic process The chemical reactions and pathways resulting in the formation of a glycosylsphingolipidinositol (GSI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The sphingolipid group is linked, via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via a ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GSI anchors have variants on this canonical linkage. tmpzr1t_l9r_go_relaxed.owl GSI anchor formation|GPI/GSI anchor biosynthetic process|GSI anchor biosynthesis|GSI anchor anabolism|GSI anchor synthesis|GPI/GSI anchor biosynthesis biological_process owl:Class GO:0042081 biolink:NamedThing GSI anchor metabolic process The chemical reactions and pathways involving glycosylsphingolipidinositol (GSI) anchors, which attach membrane proteins to the lipid bilayer of the cell membrane. tmpzr1t_l9r_go_relaxed.owl GSI anchor metabolism|GPI/GSI anchor metabolic process|GPI/GSI anchor metabolism biological_process owl:Class GO:2000539 biolink:NamedThing regulation of protein geranylgeranylation Any process that modulates the frequency, rate or extent of protein geranylgeranylation. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid geranylgeranylation|regulation of C-terminal protein geranylgeranylation tb 2011-03-29T06:23:05Z biological_process owl:Class GO:0030448 biolink:NamedThing hyphal growth Growth of fungi as threadlike, tubular structures that may contain multiple nuclei and may or may not be divided internally by septa, or cross-walls. tmpzr1t_l9r_go_relaxed.owl formation of symbiont invasive hypha within host during symbiotic interaction|formation of symbiont invasive hypha within host|formation of symbiont invasive hypha in host|symbiont invasive hypha formation within host|invasive hyphal growth https://github.com/geneontology/go-ontology/issues/19013 GO:0075061 biological_process owl:Class GO:0030447 biolink:NamedThing filamentous growth The process in which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002866 biolink:NamedThing positive regulation of acute inflammatory response to antigenic stimulus Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of acute inflammatory response to antigenic stimulus|up-regulation of acute inflammatory response to antigenic stimulus|stimulation of acute inflammatory response to antigenic stimulus|upregulation of acute inflammatory response to antigenic stimulus|activation of acute inflammatory response to antigenic stimulus biological_process owl:Class GO:0002863 biolink:NamedThing positive regulation of inflammatory response to antigenic stimulus Any process that activates or increases the frequency, rate, or extent of an inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl up-regulation of inflammatory response to antigenic stimulus|stimulation of inflammatory response to antigenic stimulus|up regulation of inflammatory response to antigenic stimulus|activation of inflammatory response to antigenic stimulus|upregulation of inflammatory response to antigenic stimulus biological_process owl:Class GO:0005851 biolink:NamedThing eukaryotic translation initiation factor 2B complex A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon. tmpzr1t_l9r_go_relaxed.owl eIF-2B|eif2B cellular_component owl:Class GO:0080130 biolink:NamedThing L-phenylalanine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = phenylpyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine:alpha-ketoglutarate aminotransferase activity MetaCyc:RXN-10814|MetaCyc:PHEAMINOTRANS-RXN|KEGG_REACTION:R00694|RHEA:25152|EC:2.6.1.57 This reaction falls within the larger set of reactions associated with EC:2.6.1.57 and several other EC numbers (See BRENDA:http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.57). dhl 2009-04-29T03:42:47Z molecular_function owl:Class GO:0070546 biolink:NamedThing L-phenylalanine aminotransferase activity Catalysis of the transfer of an amino group from L-phenylalanine to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106256 biolink:NamedThing hydroperoxy icosatetraenoate dehydratase activity A hydroperoxy icosatetraenoate <=> an oxoicosatetraenoate + H(2)O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.152|RHEA:55556 hjd 2020-03-20T14:40:16Z molecular_function owl:Class GO:0044249 biolink:NamedThing cellular biosynthetic process The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular biosynthesis|cellular anabolism|cellular formation|cellular synthesis biological_process owl:Class GO:1905330 biolink:NamedThing regulation of morphogenesis of an epithelium Any process that modulates the frequency, rate or extent of morphogenesis of an epithelium. tmpzr1t_l9r_go_relaxed.owl regulation of epithelium morphogenesis An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-07-22T07:13:49Z biological_process owl:Class GO:1902760 biolink:NamedThing Mo(VI)-molybdopterin cytosine dinucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of Mo(VI)-molybdopterin cytosine dinucleotide. tmpzr1t_l9r_go_relaxed.owl Mo-molybdopterin-cytosine-dinucleotide cofactor biosynthetic process|Mo(VI)-molybdopterin cytosine dinucleotide biosynthesis|Mo(VI)-molybdopterin cytosine dinucleotide synthesis|Mo(VI)-molybdopterin cytosine dinucleotide formation|Mo(VI)-molybdopterin cytosine dinucleotide anabolism MetaCyc:PWY-6476 dph 2014-03-06T14:00:43Z GO:0061601 biological_process owl:Class GO:0006777 biolink:NamedThing Mo-molybdopterin cofactor biosynthetic process The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Mo-molybdopterin cofactor formation|Moco biosynthetic process|Mo-molybdopterin cofactor anabolism|Mo-molybdopterin cofactor synthesis|Mo-molybdopterin cofactor biosynthesis|Moco biosynthesis|molybdenum cofactor biosynthetic process MetaCyc:PWY-6823 biological_process owl:Class GO:0061425 biolink:NamedThing positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of an ethanol catabolic process. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-02T01:12:36Z biological_process owl:Class GO:1900066 biolink:NamedThing positive regulation of ethanol catabolic process Any process that activates or increases the frequency, rate or extent of ethanol catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of ethanol catabolism|upregulation of ethanol catabolism|up-regulation of ethanol catabolism|up-regulation of ethanol catabolic process|up regulation of ethanol catabolic process|positive regulation of ethanol breakdown|upregulation of ethanol catabolic process|activation of ethanol catabolism|activation of ethanol degradation|activation of ethanol breakdown|activation of ethanol catabolic process|upregulation of ethanol breakdown|up regulation of ethanol catabolism|up regulation of ethanol breakdown|upregulation of ethanol degradation|up-regulation of ethanol breakdown|up-regulation of ethanol degradation|up regulation of ethanol degradation|positive regulation of ethanol degradation dph 2012-01-26T01:51:44Z biological_process owl:Class GO:0071803 biolink:NamedThing positive regulation of podosome assembly Any process that activates or increases the rate or extent of podosome assembly. tmpzr1t_l9r_go_relaxed.owl stimulation of podosome assembly|activation of podosome assembly|up regulation of podosome assembly|up-regulation of podosome assembly|upregulation of podosome assembly mah 2010-09-03T01:50:50Z biological_process owl:Class GO:0099551 biolink:NamedThing trans-synaptic signaling by neuropeptide, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the vesicular release and reception of neuropeptide molecules, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0045040 biolink:NamedThing protein insertion into mitochondrial outer membrane The process comprising the insertion of proteins from outside the organelle into the mitochondrial outer membrane, mediated by large outer membrane translocase complexes. tmpzr1t_l9r_go_relaxed.owl mitochondrial outer membrane protein import|protein import into mitochondrial outer membrane|protein transport into mitochondrial outer membrane biological_process owl:Class GO:0051204 biolink:NamedThing protein insertion into mitochondrial membrane The process that results in the incorporation of a protein into a mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl integral mitochondrial membrane protein positioning|protein insertion into mitochondrion membrane|localization of protein in mitochondrial membrane|integral mitochondrial membrane protein localization|protein-mitochondrion membrane insertion|positioning of protein in mitochondrial membrane|protein-mitochondrial membrane insertion https://github.com/geneontology/go-ontology/issues/15800 biological_process owl:Class GO:0034355 biolink:NamedThing NAD salvage Any process that generates nicotinamide adenine dinucleotide (NAD) from derivatives of it, without de novo synthesis; salvage is usually from the degradation products nicotinic acid (Na) and nicotinamide (Nam). tmpzr1t_l9r_go_relaxed.owl NAD salvage pathway biological_process owl:Class GO:0019365 biolink:NamedThing pyridine nucleotide salvage Any process that generates a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base, from derivatives of them without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl pyridine nucleotide cycling biological_process owl:Class GO:1900076 biolink:NamedThing regulation of cellular response to insulin stimulus Any process that modulates the frequency, rate or extent of cellular response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl yaf 2012-01-31T11:22:22Z biological_process owl:Class GO:0031654 biolink:NamedThing regulation of heat dissipation Any process that modulates the rate or extent of heat dissipation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051239 biolink:NamedThing regulation of multicellular organismal process Any process that modulates the frequency, rate or extent of a multicellular organismal process, the processes pertinent to the function of a multicellular organism above the cellular level; includes the integrated processes of tissues and organs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902214 biolink:NamedThing regulation of interleukin-4-mediated signaling pathway Any process that modulates the frequency, rate or extent of interleukin-4-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-4-mediated signalling pathway|regulation of IL-4-mediated signaling pathway lb 2013-06-12T12:53:09Z biological_process owl:Class GO:0048021 biolink:NamedThing regulation of melanin biosynthetic process Any process that alters the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of melanin. tmpzr1t_l9r_go_relaxed.owl regulation of melanin anabolism|regulation of melanin biosynthesis|regulation of melanin synthesis|regulation of melanin formation biological_process owl:Class GO:0032270 biolink:NamedThing positive regulation of cellular protein metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl upregulation of cellular protein metabolic process|up-regulation of cellular protein metabolic process|up regulation of cellular protein metabolic process|positive regulation of cellular protein metabolism|activation of cellular protein metabolic process|stimulation of cellular protein metabolic process biological_process owl:Class GO:0031325 biolink:NamedThing positive regulation of cellular metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular metabolism|upregulation of cellular metabolic process|up regulation of cellular metabolic process|activation of cellular metabolic process|up-regulation of cellular metabolic process|stimulation of cellular metabolic process biological_process owl:Class GO:0044477 biolink:NamedThing envenomation resulting in negative regulation of platelet aggregation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction in the frequency, rate or extent of platelet aggregation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:36:44Z biological_process owl:Class GO:0035738 biolink:NamedThing envenomation resulting in modulation of process in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with the manifestation of some change or damage to the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in modification of morphology or physiology of other organism https://github.com/geneontology/go-ontology/issues/18605 bf 2011-03-17T10:59:27Z biological_process owl:Class GO:0046793 biolink:NamedThing induction by virus of phosphorylation of host RNA polymerase II Any process in which a virus activates the frequency, rate or extent of phosphorylation of host RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl virus-induced modification of host RNA polymerase II|induction by virus of modification of host RNA polymerase II biological_process owl:Class GO:0039614 biolink:NamedThing induction by virus of host protein phosphorylation Any process in which a virus activates or increases the frequency, rate or extent of phosphorylation of viral or host proteins in a host. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-06T11:15:56Z biological_process owl:Class GO:1903147 biolink:NamedThing negative regulation of autophagy of mitochondrion Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrion degradation by autophagy. tmpzr1t_l9r_go_relaxed.owl inhibition of mitochondrion degradation|down regulation of mitochondrion degradation|downregulation of mitochondrion degradation|inhibition of mitophagy|down-regulation of mitochondrion degradation|down regulation of mitochondrial degradation|down-regulation of mitophagy bf 2014-07-09T08:23:58Z biological_process owl:Class GO:0050925 biolink:NamedThing negative regulation of negative chemotaxis Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl inhibition of negative chemotaxis|downregulation of negative chemotaxis|down regulation of negative chemotaxis|down-regulation of negative chemotaxis biological_process owl:Class GO:0050923 biolink:NamedThing regulation of negative chemotaxis Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904449 biolink:NamedThing negative regulation of aspartate secretion Any process that stops, prevents or reduces the frequency, rate or extent of aspartate secretion. tmpzr1t_l9r_go_relaxed.owl inhibition of aspartate secretion|downregulation of aspartate secretion|down regulation of aspartate secretion|down-regulation of aspartate secretion sl 2015-07-07T20:57:04Z biological_process owl:Class GO:0031147 biolink:NamedThing 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolic process The chemical reactions and pathways involving 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells. tmpzr1t_l9r_go_relaxed.owl 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolism|DIF-1 metabolic process|DIF-1 metabolism biological_process owl:Class GO:0034051 biolink:NamedThing negative regulation of plant-type hypersensitive response Any process that stops, prevents, or reduces the frequency, rate or extent of the hypersensitive response in a plant. tmpzr1t_l9r_go_relaxed.owl negative regulation of HR|negative regulation of HR-PCD|downregulation of plant-type hypersensitive response|negative regulation of plant hypersensitive response|down regulation of plant-type hypersensitive response|down-regulation of plant-type hypersensitive response|inhibition of plant-type hypersensitive response biological_process owl:Class GO:0010363 biolink:NamedThing regulation of plant-type hypersensitive response Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. tmpzr1t_l9r_go_relaxed.owl regulation of HR|regulation of HR-PCD|regulation of plant hypersensitive response Note that term is to be used to annotate gene products in the plant. To annotate genes in a symbiont, consider the biological process term 'modulation by symbiont of host programmed cell death ; GO:0052040'. biological_process owl:Class GO:1904848 biolink:NamedThing negative regulation of cell chemotaxis to fibroblast growth factor Any process that stops, prevents or reduces the frequency, rate or extent of cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl downregulation of cell chemotaxis to fibroblast growth factor|down regulation of cell chemotaxis to fibroblast growth factor|inhibition of cell chemotaxis to fibroblast growth factor|down-regulation of cell chemotaxis to fibroblast growth factor rph 2015-12-10T12:04:08Z biological_process owl:Class GO:0090288 biolink:NamedThing negative regulation of cellular response to growth factor stimulus Any process that decreases the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-18T03:01:25Z biological_process owl:Class GO:0044065 biolink:NamedThing regulation of respiratory system process Any process that modulates the frequency, rate or extent of a respiratory system process, an organ system process carried out by any of the organs or tissues of the respiratory system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102281 biolink:NamedThing formylaminopyrimidine deformylase activity Catalysis of the reaction: formylaminopyrimidine + H2O <=> 4-amino-5-ammoniomethyl-2-methylpyrimidine + formate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12612 molecular_function owl:Class GO:0016811 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9673053|Reactome:R-HSA-9673054|EC:3.5.1.- molecular_function owl:Class GO:0007553 biolink:NamedThing regulation of ecdysteroid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development, including the metamorphosis of immature forms and the development of the reproductive system and the maturation of oocytes in adult females. tmpzr1t_l9r_go_relaxed.owl regulation of ecdysteroid metabolism biological_process owl:Class GO:0032350 biolink:NamedThing regulation of hormone metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving any hormone. tmpzr1t_l9r_go_relaxed.owl regulation of hormone metabolism biological_process owl:Class GO:1903096 biolink:NamedThing protein localization to meiotic spindle midzone A process in which a protein is transported to, or maintained in, a location within a meiotic spindle midzone. tmpzr1t_l9r_go_relaxed.owl protein localisation in meiotic spindle midzone|protein localisation to meiotic spindle midzone|protein localization in meiotic spindle midzone kmv 2014-06-03T16:06:22Z biological_process owl:Class GO:1905359 biolink:NamedThing protein localization to meiotic spindle A process in which a protein is transported to, or maintained in, a location within a meiotic spindle. tmpzr1t_l9r_go_relaxed.owl protein localisation to meiotic spindle mah 2016-08-10T14:49:03Z biological_process owl:Class GO:2000396 biolink:NamedThing negative regulation of ubiquitin-dependent endocytosis Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin-dependent endocytosis. tmpzr1t_l9r_go_relaxed.owl negative regulation of ubiquitin-mediated endocytosis mah 2011-02-22T11:25:21Z biological_process owl:Class GO:0045806 biolink:NamedThing negative regulation of endocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of endocytosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of endocytosis|inhibition of endocytosis|downregulation of endocytosis|down regulation of endocytosis biological_process owl:Class GO:2000048 biolink:NamedThing negative regulation of cell-cell adhesion mediated by cadherin Any process that stops, prevents, or reduces the frequency, rate or extent of cell-cell adhesion mediated by cadherin. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T12:56:51Z biological_process owl:Class GO:0061043 biolink:NamedThing regulation of vascular wound healing Any process that modulates the rate, frequency, or extent of blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to damaged vasculature. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:21:59Z biological_process owl:Class GO:0045765 biolink:NamedThing regulation of angiogenesis Any process that modulates the frequency, rate or extent of angiogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001105 biolink:NamedThing maltoheptaose transport The directed movement of a maltoheptaoseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:31:22Z biological_process owl:Class GO:2001104 biolink:NamedThing heptasaccharide transport The directed movement of a heptasaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:29:58Z biological_process owl:Class GO:0015859 biolink:NamedThing intracellular nucleoside transport The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015858 biolink:NamedThing nucleoside transport The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043377 biolink:NamedThing negative regulation of CD8-positive, alpha-beta T cell differentiation Any process that stops, prevents, or reduces the rate of CD8-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of CD8-positive, alpha-beta T cell development|downregulation of CD8-positive, alpha-beta T cell differentiation|down-regulation of CD8-positive, alpha-beta T cell differentiation|negative regulation of CD8-positive, alpha beta T-lymphocyte differentiation|negative regulation of CD8-positive T-cell differentiation|negative regulation of CD8-positive, alpha beta T-cell differentiation|negative regulation of CD8-positive T lymphocyte differentiation|down regulation of CD8-positive, alpha-beta T cell differentiation|negative regulation of CD8-positive, alpha beta T lymphocyte differentiation|inhibition of CD8-positive, alpha-beta T cell differentiation|negative regulation of CD8-positive T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905388 biolink:NamedThing cellular response to beta-carotene Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a beta-carotene stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to beta,beta-carotene sl 2016-08-18T16:18:31Z biological_process owl:Class GO:1905387 biolink:NamedThing response to beta-carotene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a beta-carotene stimulus. tmpzr1t_l9r_go_relaxed.owl response to beta,beta-carotene sl 2016-08-18T16:18:24Z biological_process owl:Class GO:0010712 biolink:NamedThing regulation of collagen metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl regulation of collagen metabolism biological_process owl:Class GO:0003128 biolink:NamedThing heart field specification The process that results in the delineation of a specific region of the lateral mesoderm into the area in which the heart will develop. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T02:56:05Z biological_process owl:Class GO:0010092 biolink:NamedThing specification of animal organ identity The regionalization process in which the identity of an animal organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030711 biolink:NamedThing positive regulation of border follicle cell delamination Any process that increases the frequency, rate or extent of border cell delamination. tmpzr1t_l9r_go_relaxed.owl stimulation of border follicle cell delamination|up regulation of border follicle cell delamination|up-regulation of border follicle cell delamination|positive regulation of border cell delamination|activation of border follicle cell delamination|upregulation of border follicle cell delamination biological_process owl:Class GO:0021582 biolink:NamedThing medulla oblongata maturation A developmental process, independent of morphogenetic (shape) change, that is required for the medulla oblongata to attain its fully functional state. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate. tmpzr1t_l9r_go_relaxed.owl myelencephalon maturation|medulla maturation biological_process owl:Class GO:0071695 biolink:NamedThing anatomical structure maturation A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T11:43:38Z biological_process owl:Class GO:0050814 biolink:NamedThing epothilone biosynthetic process The chemical reactions and pathways resulting in the formation of epothilone, a drug obtained from the myxobacteria Sporangium cellulosum that interferes with cell division. Some epothilones are being studied as treatments for cancer. tmpzr1t_l9r_go_relaxed.owl epothilone anabolism|epothilone biosynthesis|epothilone synthesis|epothilone formation biological_process owl:Class GO:0097634 biolink:NamedThing integral component of phagophore assembly site membrane The component of the phagophore assembly site membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to phagophore assembly site membrane|phagophore assembly site integral membrane protein cellular_component owl:Class GO:0097633 biolink:NamedThing intrinsic component of phagophore assembly site membrane The component of the phagophore assembly site membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to phagophore assembly site membrane cellular_component owl:Class GO:1900664 biolink:NamedThing regulation of emodin biosynthetic process Any process that modulates the frequency, rate or extent of emodin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of emodin anabolism|regulation of emodin synthesis|regulation of emodin formation|regulation of emodin biosynthesis di 2012-05-22T04:14:36Z biological_process owl:Class GO:1900376 biolink:NamedThing regulation of secondary metabolite biosynthetic process Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of secondary metabolite biosynthesis di 2012-04-17T01:55:23Z biological_process owl:Class GO:0019332 biolink:NamedThing aerobic respiration, using nitrite as electron donor The oxidation of nitrite (NO2) to nitrate (NO3), using oxygen (O2) as the electron acceptor. Nitrite oxidation is the final step in nitrification, the oxidation of ammonia to nitrate, and nitrite oxidoreductase (NOR) is the key enzyme complex that catalyzes the conversion of nitrite to nitrate in nitrite oxidizing species. tmpzr1t_l9r_go_relaxed.owl nitrite oxidation MetaCyc:P282-PWY biological_process owl:Class GO:0015975 biolink:NamedThing energy derivation by oxidation of reduced inorganic compounds The chemical reactions and pathways by which a cell derives energy from inorganic compounds; results in the oxidation of the compounds from which energy is released. tmpzr1t_l9r_go_relaxed.owl chemolithotrophie|lithotrophy|chemolithotrophy Wikipedia:Lithotrophy biological_process owl:Class GO:0098501 biolink:NamedThing polynucleotide dephosphorylation The process of removing one or more phosphate groups from a polynucleotide. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-18T14:49:10Z biological_process owl:Class GO:0016311 biolink:NamedThing dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Dephosphorylation biological_process owl:Class GO:1905652 biolink:NamedThing negative regulation of artery morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of artery morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of artery morphogenesis|downregulation of arterial morphogenesis|down-regulation of artery morphogenesis|downregulation of arteriogenesis|inhibition of arteriogenesis|negative regulation of arterial morphogenesis|down regulation of arteriogenesis|down-regulation of arteriogenesis|negative regulation of arteriogenesis|down regulation of artery morphogenesis|inhibition of arterial morphogenesis|down regulation of arterial morphogenesis|down-regulation of arterial morphogenesis|downregulation of artery morphogenesis rph 2016-11-09T12:19:53Z biological_process owl:Class GO:1905651 biolink:NamedThing regulation of artery morphogenesis Any process that modulates the frequency, rate or extent of artery morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of arteriogenesis|regulation of arterial morphogenesis rph 2016-11-09T12:19:37Z biological_process owl:Class GO:1900867 biolink:NamedThing sarcinapterin metabolic process The chemical reactions and pathways involving sarcinapterin. tmpzr1t_l9r_go_relaxed.owl sarcinapterin metabolism tt 2012-06-12T04:34:10Z biological_process owl:Class GO:0072350 biolink:NamedThing tricarboxylic acid metabolic process The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing three carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl tricarboxylic acid metabolism mah 2010-11-11T05:07:30Z biological_process owl:Class GO:0005513 biolink:NamedThing detection of calcium ion The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl calcium ion detection|detection of Ca2+ ion|calcium ion sensing|Ca2+ ion detection biological_process owl:Class GO:0009593 biolink:NamedThing detection of chemical stimulus The series of events in which a chemical stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of chemical stimulus|chemoperception|chemoreception|detection of chemical substance|perception of chemical substance biological_process owl:Class GO:0034075 biolink:NamedThing arabidiol synthase activity Catalysis of the reaction: oxidosqualene + H2O = arabidiol ((13R,14R,17E)-malabarica-17,21-diene-3beta,14-diol). tmpzr1t_l9r_go_relaxed.owl RHEA:31035|EC:4.2.1.124|MetaCyc:RXN-9684 molecular_function owl:Class GO:0031559 biolink:NamedThing oxidosqualene cyclase activity Catalysis of the cyclization of (S)-2,3-epoxysqualene to form a triterpene. tmpzr1t_l9r_go_relaxed.owl 2,3-oxidosqualene cyclase activity Note that the phrase 'oxidosqualene cyclase' has been used to refer to enzymes that catalyze the reaction represented by 'lanosterol synthase activity ; GO:0000250'. molecular_function owl:Class GO:0140669 biolink:NamedThing negative regulation of oxytocin production Any process that stops, prevents, or reduces the rate of production of oxytocin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21535 pg 2021-06-24T11:31:45Z biological_process owl:Class GO:0035052 biolink:NamedThing dorsal vessel aortic cell fate commitment The commitment of dorsal vessel cardioblast cells to an aortic cell fate and their capacity to differentiate into aortic cells. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045821 biolink:NamedThing positive regulation of glycolytic process Any process that activates or increases the frequency, rate or extent of glycolysis. tmpzr1t_l9r_go_relaxed.owl activation of glycolysis|up regulation of glycolysis|stimulation of glycolysis|upregulation of glycolysis|up-regulation of glycolysis biological_process owl:Class GO:0042327 biolink:NamedThing positive regulation of phosphorylation Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. tmpzr1t_l9r_go_relaxed.owl stimulation of phosphorylation|up regulation of phosphorylation|up-regulation of phosphorylation|upregulation of phosphorylation|activation of phosphorylation biological_process owl:Class GO:1900384 biolink:NamedThing regulation of flavonol biosynthetic process Any process that modulates the frequency, rate or extent of flavonol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl tb 2012-04-17T10:22:49Z biological_process owl:Class GO:1902210 biolink:NamedThing positive regulation of bacterial-type flagellum assembly Any process that activates or increases the frequency, rate or extent of bacterial-type flagellum assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of bacterial flagellum assembly|up regulation of bacterial-type flagellum assembly|up-regulation of bacterial-type flagellum assembly|upregulation of bacterial-type flagellum assembly|activation of bacterial-type flagellum assembly|activation of bacterial flagellum assembly|up regulation of bacterial flagellum assembly|upregulation of bacterial flagellum assembly|positive regulation of bacterial flagellum assembly jl 2013-06-11T14:20:30Z biological_process owl:Class GO:0031346 biolink:NamedThing positive regulation of cell projection organization Any process that activates or increases the frequency, rate or extent of the process involved in the formation, arrangement of constituent parts, or disassembly of cell projections. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell projection organization|stimulation of cell projection organization|activation of cell projection organization|positive regulation of cell projection organisation|up regulation of cell projection organization|upregulation of cell projection organization|positive regulation of cell projection organization and biogenesis biological_process owl:Class GO:1903209 biolink:NamedThing positive regulation of oxidative stress-induced cell death Any process that activates or increases the frequency, rate or extent of oxidative stress-induced cell death. tmpzr1t_l9r_go_relaxed.owl up regulation of cell death in response to oxidative stress|up-regulation of cell death in response to oxidative stress|enhancement of oxidative stress-induced cell death|positive regulation of cell death in response to oxidative stress|activation of cell death in response to oxidative stress|upregulation of cell death in response to oxidative stress bf 2014-07-22T09:32:19Z biological_process owl:Class GO:0042149 biolink:NamedThing cellular response to glucose starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009267 biolink:NamedThing cellular response to starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900110 biolink:NamedThing negative regulation of histone H3-K9 dimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 dimethylation. tmpzr1t_l9r_go_relaxed.owl down regulation of histone lysine H3 K9 dimethylation|inhibition of histone H3 K9 dimethylation|negative regulation of histone lysine H3 K9 dimethylation|down-regulation of histone H3-K9 dimethylation|downregulation of histone lysine H3 K9 dimethylation|inhibition of histone H3-K9 dimethylation|downregulation of histone H3-K9 dimethylation|negative regulation of histone H3 K9 dimethylation|down-regulation of histone H3 K9 dimethylation|downregulation of histone H3 K9 dimethylation|down-regulation of histone lysine H3 K9 dimethylation|down regulation of histone H3 K9 dimethylation|inhibition of histone lysine H3 K9 dimethylation|down regulation of histone H3-K9 dimethylation bf 2012-02-21T09:06:22Z biological_process owl:Class GO:1900109 biolink:NamedThing regulation of histone H3-K9 dimethylation Any process that modulates the frequency, rate or extent of histone H3-K9 dimethylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3 K9 dimethylation|regulation of histone lysine H3 K9 dimethylation bf 2012-02-21T09:06:18Z biological_process owl:Class GO:0044747 biolink:NamedThing mature miRNA 3'-end processing Any process involved in forming distinct miRNA isoforms from a mature miRNA that differ at their 3'-ends. tmpzr1t_l9r_go_relaxed.owl miRNA trimming|miRNA 3'-end processing|miRNA 3' end terminal trimming jl 2012-11-15T13:45:21Z biological_process owl:Class GO:1904811 biolink:NamedThing positive regulation of dense core granule transport Any process that activates or increases the frequency, rate or extent of dense core granule transport. tmpzr1t_l9r_go_relaxed.owl upregulation of dense core granule transport|activation of dense core vesicle transport|positive regulation of dense core vesicle transport|up regulation of dense core vesicle transport|up regulation of dense core granule transport|upregulation of dense core vesicle transport|up-regulation of dense core granule transport|up-regulation of dense core vesicle transport|activation of dense core granule transport cdk-5 in C.elegans (G5ECH7) in PMID:22699897 (inferred from mutant phenotype). es 2015-11-11T10:40:25Z biological_process owl:Class GO:0044533 biolink:NamedThing positive regulation of apoptotic process in other organism Any process in which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death by apoptosis in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-21T11:25:24Z biological_process owl:Class GO:0044532 biolink:NamedThing modulation of apoptotic process in other organism A process in which an organism modulates the frequency, rate or extent of apoptosis in a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of apoptotic process in other organism jl 2012-03-21T11:17:18Z biological_process owl:Class GO:0005883 biolink:NamedThing neurofilament A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter. tmpzr1t_l9r_go_relaxed.owl type IV intermediate filament Wikipedia:Neurofilament|NIF_Subcellular:sao1316272517 cellular_component owl:Class GO:0005882 biolink:NamedThing intermediate filament A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins. tmpzr1t_l9r_go_relaxed.owl type I intermediate filament associated protein|type II intermediate filament associated protein|intermediate filament associated protein FMA:63851|NIF_Subcellular:sao952483289|Wikipedia:Intermediate_filament cellular_component owl:Class GO:0006364 biolink:NamedThing rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. tmpzr1t_l9r_go_relaxed.owl 35S primary transcript processing GO:0006365 biological_process owl:Class GO:0034470 biolink:NamedThing ncRNA processing Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009737 biolink:NamedThing response to abscisic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to abscisic acid stimulus biological_process owl:Class GO:0033993 biolink:NamedThing response to lipid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000091 biolink:NamedThing negative regulation of mesonephric glomerular mesangial cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:10:31Z biological_process owl:Class GO:0030920 biolink:NamedThing peptidyl-serine acetylation The acetylation of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006473 biolink:NamedThing protein acetylation The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid acetylation biological_process owl:Class GO:2000078 biolink:NamedThing positive regulation of type B pancreatic cell development Any process that activates or increases the frequency, rate or extent of pancreatic B cell development. tmpzr1t_l9r_go_relaxed.owl positive regulation of pancreatic B cell development|positive regulation of pancreatic beta cell development tb 2010-08-27T11:21:19Z biological_process owl:Class GO:0070341 biolink:NamedThing fat cell proliferation The multiplication or reproduction of fat cells by cell division, resulting in the expansion of their population. A fat cell is an animal connective tissue cell specialized for the synthesis and storage of fat. tmpzr1t_l9r_go_relaxed.owl adipocyte proliferation|adipose cell proliferation biological_process owl:Class GO:2000370 biolink:NamedThing positive regulation of clathrin-dependent endocytosis Any process that activates or increases the frequency, rate or extent of clathrin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of clathrin-mediated endocytosis|positive regulation of clathrin coated pit-dependent endocytosis mah 2011-02-09T12:36:28Z biological_process owl:Class GO:0070257 biolink:NamedThing positive regulation of mucus secretion Any process that activates or increases the frequency, rate or extent of the regulated release of mucus from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl positive regulation of mucus production biological_process owl:Class GO:0070255 biolink:NamedThing regulation of mucus secretion Any process that modulates the frequency, rate or extent of the regulated release of mucus from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl regulation of mucus production biological_process owl:Class GO:0106151 biolink:NamedThing CNBH domain intrinsic ligand binding Interacting selectivity and noncovalently with a cyclic nucleotide mimicking protein motif that is part of the same protein. The CNBHD is a domain on KCNH channels that creates a binding pocket on the KCNH channel that resembles the cyclic nucleotide- binding domain on other ion channels. It binds to a peptide motif that is part of the same protein rather than a cyclic nucleotide. tmpzr1t_l9r_go_relaxed.owl It is unclear if the motif bound by CNBHD is a specific motif or just a beta sheet with the appropriate amino acids. hjd 2018-09-18T20:47:35Z molecular_function owl:Class GO:0006269 biolink:NamedThing DNA replication, synthesis of RNA primer The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis. tmpzr1t_l9r_go_relaxed.owl replication priming biological_process owl:Class GO:0032774 biolink:NamedThing RNA biosynthetic process The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. Refers not only to transcription but also to e.g. viral RNA replication. tmpzr1t_l9r_go_relaxed.owl RNA synthesis|RNA biosynthesis|RNA anabolism|RNA formation Note that, in some cases, viral RNA replication and viral transcription from RNA actually refer to the same process, but may be called differently depending on the focus of a specific research study. biological_process owl:Class GO:1901176 biolink:NamedThing lycopene catabolic process The chemical reactions and pathways resulting in the breakdown of lycopene. tmpzr1t_l9r_go_relaxed.owl lycopene degradation|lycopene catabolism|lycopene breakdown yaf 2012-07-19T09:48:41Z biological_process owl:Class GO:0016121 biolink:NamedThing carotene catabolic process The chemical reactions and pathways resulting in the breakdown of carotenes, hydrocarbon carotenoids. tmpzr1t_l9r_go_relaxed.owl carotene breakdown|carotene catabolism|carotene degradation biological_process owl:Class GO:1904154 biolink:NamedThing positive regulation of retrograde protein transport, ER to cytosol Any process that activates or increases the frequency, rate or extent of retrograde protein transport, ER to cytosol. tmpzr1t_l9r_go_relaxed.owl upregulation of protein dislocation from ER|activation of retrograde protein transport, endoplasmic reticulum to cytosol|up regulation of protein dislocation from ER|positive regulation of retrograde protein transport, endoplasmic reticulum to cytosol|up-regulation of retrograde protein transport, ER to cytosol|up-regulation of retrograde protein transport, endoplasmic reticulum to cytosol|upregulation of retrograde protein transport, ER to cytosol|up-regulation of protein dislocation from ER|positive regulation of protein retrotranslocation from ER|up regulation of retrograde protein transport, endoplasmic reticulum to cytosol|up regulation of retrograde protein transport, ER to cytosol|activation of retrograde protein transport, ER to cytosol|upregulation of retrograde protein transport, endoplasmic reticulum to cytosol|activation of protein dislocation from ER|up-regulation of protein retrotranslocation from ER|positive regulation of protein dislocation from ER bf 2015-04-15T09:23:19Z biological_process owl:Class GO:0070863 biolink:NamedThing positive regulation of protein exit from endoplasmic reticulum Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl stimulation of protein exit from endoplasmic reticulum|positive regulation of protein export from endoplasmic reticulum|upregulation of protein exit from endoplasmic reticulum|up-regulation of protein exit from endoplasmic reticulum|positive regulation of protein export from ER|up regulation of protein exit from endoplasmic reticulum|positive regulation of protein exit from ER|activation of protein exit from endoplasmic reticulum mah 2009-08-17T03:50:04Z biological_process owl:Class GO:1904415 biolink:NamedThing regulation of xenophagy Any process that modulates the frequency, rate or extent of xenophagy. tmpzr1t_l9r_go_relaxed.owl An example of this is mouse Tbk1 (UniProt symbol, Q9WUN2) in PMID:21617041 (inferred from mutant phenotype). pad 2015-06-29T12:30:47Z biological_process owl:Class GO:0006210 biolink:NamedThing thymine catabolic process The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base. tmpzr1t_l9r_go_relaxed.owl thymine catabolism|thymine breakdown|thymine degradation biological_process owl:Class GO:0019859 biolink:NamedThing thymine metabolic process The chemical reactions and pathways involving thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base. tmpzr1t_l9r_go_relaxed.owl thymine metabolism biological_process owl:Class GO:0002754 biolink:NamedThing intracellular endosomal pattern recognition receptor signaling pathway Any series of molecular signals generated as a consequence of an intracellular vesicle pattern recognition receptor (PRR) binding to one of its physiological ligands. PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species. tmpzr1t_l9r_go_relaxed.owl intracellular vesicle pathogen receptor signaling pathway|intracellular vesicle pattern recognition receptor signalling pathway|intracellular vesicle pattern recognition receptor signaling pathway|intracellular vesicle PRR signaling pathway|intracellular vesicle PAMP receptor signaling pathway https://github.com/geneontology/go-ontology/issues/18679 biological_process owl:Class GO:0002221 biolink:NamedThing pattern recognition receptor signaling pathway Any series of molecular signals generated as a consequence of a pattern recognition receptor (PRR) binding to one of its physiological ligands. PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species, or damage-associated molecular pattern (DAMPs), endogenous molecules released from damaged cells. tmpzr1t_l9r_go_relaxed.owl PAMP receptor signaling pathway|PRR signaling pathway|pathogen receptor signaling pathway|pathogen receptor signalling pathway https://github.com/geneontology/go-ontology/issues/18588 biological_process owl:Class GO:0034055 biolink:NamedThing effector-mediated induction of programmed cell death in host A symbiont process in which a molecule secreted by the symbiont activates a programmed cell death pathway in the host to suppress the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by symbiont of host defense-related programmed cell death|upregulation by symbiont of host defense-related programmed cell death|enhancement by symbiont of host defense-related programmed cell death|up regulation by symbiont of host defense-related programmed cell death|stimulation by symbiont of host defense-related programmed cell death|positive regulation by symbiont of host defense-related PCD|positive regulation by symbiont of host defense-related programmed cell death|activation by symbiont of host defense-related programmed cell death https://github.com/geneontology/go-ontology/issues/20284 Note that this term is used to annotate gene products of the symbiont. biological_process owl:Class GO:0140418 biolink:NamedThing effector-mediated modulation of host process by symbiont A process mediated by a molecule secreted by a symbiont that results in the modulation (either activation or suppresion) of a host structure or process. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl effector mediated modulation of host process by symbiont|effector triggered modulation of host process by symbiont|effector-dependent modulation of host process by symbiont https://github.com/geneontology/go-ontology/issues/18605|https://github.com/geneontology/go-ontology/issues/20971 pg 2020-01-29T21:24:42Z biological_process owl:Class GO:0010396 biolink:NamedThing rhamnogalacturonan II metabolic process The chemical reactions and pathways involving rhamnogalacturonan II, a low molecular mass (5-10KDa) pectic polysaccharide. The backbone of RG-II contains at least 8 1,4-linked alpha-D-GalpA residues. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan II metabolism biological_process owl:Class GO:0010393 biolink:NamedThing galacturonan metabolic process The chemical reactions and pathways involving galacturonan, a pectin polymer containing a backbone of alpha-(1->4)-linked D-galacturonic acid residues. tmpzr1t_l9r_go_relaxed.owl galacturonan metabolism biological_process owl:Class GO:0044505 biolink:NamedThing positive regulation of G protein-coupled receptor activity in other organism A process that activates or increases the frequency, rate or extent of the activity of a G protein-coupled receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of G-protein coupled receptor activity in other organism|regulation of G-protein coupled receptor activity in other organism jl 2012-02-23T04:24:17Z biological_process owl:Class GO:2000273 biolink:NamedThing positive regulation of signaling receptor activity Any process that activates or increases the frequency, rate or extent of signaling receptor activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of signalling receptor activity bf 2010-12-02T09:28:50Z biological_process owl:Class GO:0051628 biolink:NamedThing positive regulation of epinephrine uptake Any process that activates or increases the frequency, rate or extent of the directed movement of epinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of adrenaline uptake|activation of epinephrine uptake|up-regulation of epinephrine uptake|up regulation of epinephrine uptake|positive regulation of epinephrine import|stimulation of epinephrine uptake|upregulation of epinephrine uptake biological_process owl:Class GO:0051626 biolink:NamedThing regulation of epinephrine uptake Any process that modulates the frequency, rate or extent of the directed movement of the neurotransmitter epinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of epinephrine import|regulation of adrenaline uptake biological_process owl:Class GO:0006303 biolink:NamedThing double-strand break repair via nonhomologous end joining The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear. tmpzr1t_l9r_go_relaxed.owl NHEJ biological_process owl:Class GO:0006302 biolink:NamedThing double-strand break repair The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. tmpzr1t_l9r_go_relaxed.owl Note that the processes of nuclear double-strand break repair and mitochondrial double-strand break repair are genetically separable (PMID:22214610). To annotate gene products involved in mitochondrial double-strand break repair, please use GO:0097551 'mitochondrial double-strand break repair'. biological_process owl:Class GO:1901110 biolink:NamedThing actinorhodin metabolic process The chemical reactions and pathways involving actinorhodin. tmpzr1t_l9r_go_relaxed.owl actinorhodin metabolism yaf 2012-07-11T03:05:37Z biological_process owl:Class GO:1903027 biolink:NamedThing regulation of opsonization Any process that modulates the frequency, rate or extent of opsonization. tmpzr1t_l9r_go_relaxed.owl rl 2014-05-16T17:34:41Z biological_process owl:Class GO:1901889 biolink:NamedThing negative regulation of cell junction assembly Any process that stops, prevents or reduces the frequency, rate or extent of cell junction assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of cell junction assembly|down regulation of cell junction assembly|down-regulation of cell junction assembly|downregulation of cell junction assembly tb 2013-02-06T19:40:41Z biological_process owl:Class GO:1901888 biolink:NamedThing regulation of cell junction assembly Any process that modulates the frequency, rate or extent of cell junction assembly. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-06T19:40:32Z biological_process owl:Class GO:0015958 biolink:NamedThing bis(5'-nucleosidyl) oligophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules. tmpzr1t_l9r_go_relaxed.owl bis(5'-nucleosidyl) oligophosphate catabolism|bis(5'-nucleosidyl) oligophosphate breakdown|bis(5'-nucleosidyl) oligophosphate degradation biological_process owl:Class GO:0009166 biolink:NamedThing nucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). tmpzr1t_l9r_go_relaxed.owl nucleotide catabolism|nucleotide degradation|nucleotide breakdown biological_process owl:Class GO:0042204 biolink:NamedThing s-triazine compound catabolic process The chemical reactions and pathways resulting in the breakdown of any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms. tmpzr1t_l9r_go_relaxed.owl s-triazine compound degradation|s-triazine compound catabolism|s-triazine compound breakdown UM-BBD_pathwayID:tria biological_process owl:Class GO:0042178 biolink:NamedThing xenobiotic catabolic process The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl exogenous drug degradation|exogenous drug catabolism|xenobiotic degradation|exogenous drug catabolic process|xenobiotic breakdown|drug catabolism|xenobiotic catabolism|drug catabolic process|drug breakdown|exogenous drug breakdown|drug degradation https://github.com/geneontology/go-ontology/issues/19460 GO:0042737|GO:0042738 biological_process owl:Class GO:1905130 biolink:NamedThing carcinine import across plasma membrane The directed movement of carcinine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl dph 2016-04-12T15:15:18Z biological_process owl:Class GO:0045117 biolink:NamedThing azole transmembrane transport The directed movement of azoles, heterocyclic compounds found in many biologically important substances, across a lipid bilayer, across a membrane. tmpzr1t_l9r_go_relaxed.owl azole transport biological_process owl:Class GO:2000995 biolink:NamedThing negative regulation of mannan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of mannan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of mannan breakdown|negative regulation of mannan catabolism|negative regulation of mannan degradation tt 2011-08-08T03:19:11Z biological_process owl:Class GO:2000994 biolink:NamedThing regulation of mannan catabolic process Any process that modulates the frequency, rate or extent of mannan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of mannan catabolism|regulation of mannan breakdown|regulation of mannan degradation tt 2011-08-08T03:19:03Z biological_process owl:Class GO:0034389 biolink:NamedThing lipid droplet organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle. tmpzr1t_l9r_go_relaxed.owl lipid particle organization|adiposome organization|lipid particle organisation|lipid body organization|lipid particle organization and biogenesis https://github.com/geneontology/go-ontology/issues/15963|https://github.com/geneontology/go-ontology/issues/13534 biological_process owl:Class GO:0006996 biolink:NamedThing organelle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl organelle organisation|single-organism organelle organization|organelle organization and biogenesis|single organism organelle organization jl 2013-12-19T15:25:51Z GO:1902589 biological_process owl:Class GO:0010746 biolink:NamedThing regulation of long-chain fatty acid import across plasma membrane Any process that modulates the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl regulation of plasma membrane long-chain fatty acid transport biological_process owl:Class GO:0034762 biolink:NamedThing regulation of transmembrane transport Any process that modulates the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl regulation of membrane transport biological_process owl:Class GO:0033864 biolink:NamedThing positive regulation of NAD(P)H oxidase activity Any process that activates or increases the activity of the enzyme NAD(P)H oxidase. tmpzr1t_l9r_go_relaxed.owl stimulation of NAD(P)H oxidase activity|up-regulation of NAD(P)H oxidase activity|activation of NAD(P)H oxidase activity|up regulation of NAD(P)H oxidase activity|upregulation of NAD(P)H oxidase activity biological_process owl:Class GO:0005272 biolink:NamedThing sodium channel activity Enables the facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-3295580|Reactome:R-HSA-2730664 molecular_function owl:Class GO:0005261 biolink:NamedThing cation channel activity Enables the energy-independent passage of cations across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl non-selective cation channel activity|cation diffusion facilitator activity Reactome:R-HSA-426223|Reactome:R-HSA-169683|Reactome:R-HSA-1168376|Reactome:R-HSA-2089943|Reactome:R-HSA-4420052|Reactome:R-HSA-1296043 GO:0015281|GO:0015338 molecular_function owl:Class GO:0060520 biolink:NamedThing activation of prostate induction by androgen receptor signaling pathway Any series of molecular signals generated as a consequence of an androgen binding to its receptor in the urogenital sinus mesenchyme that initiates prostate induction. Prostate induction is the close range interaction of the urogenital sinus mesenchyme and the urogenital sinus epithelium that causes the cells of the urogenital sinus epithelium to change their fates and specify the development of the prostate gland. tmpzr1t_l9r_go_relaxed.owl activation of prostate induction by androgen receptor signalling pathway biological_process owl:Class GO:0010647 biolink:NamedThing positive regulation of cell communication Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050592 biolink:NamedThing 4-hydroxyphenylacetaldehyde oxime monooxygenase activity Catalysis of the reaction: (Z)-(4-hydroxyphenyl)acetaldehyde oxime + H(+) + NADPH + O(2) = (S)-4-hydroxymandelonitrile + 2 H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl (Z)-4-hydroxyphenylacetaldehyde oxime,NADPH:oxygen oxidoreductase activity|4-hydroxyphenylacetaldehyde oxime,NADPH:oxygen oxidoreductase activity|NADPH-cytochrome P450 reductase (CYP71E1)|cytochrome P450-II-dependent monooxygenase activity|cytochrome P450II-dependent monooxygenase activity|4-hydroxybenzeneacetaldehyde oxime monooxygenase activity|CYP71E1 activity EC:1.14.14.37|MetaCyc:1.14.13.68-RXN|KEGG_REACTION:R05728|RHEA:18401 molecular_function owl:Class GO:0060557 biolink:NamedThing positive regulation of vitamin D biosynthetic process Any process that increases the rate, frequency or extent of a vitamin D biosynthetic process. Vitamin D biosynthesis is the chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:46:14Z biological_process owl:Class GO:0030436 biolink:NamedThing asexual sporulation The formation of spores derived from the products of an asexual cell division. Examples of this process are found in bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl mitotic sporulation|asexual reproductive sporulation|mitotic spore formation|asexual spore formation biological_process owl:Class GO:0019954 biolink:NamedThing asexual reproduction The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process. tmpzr1t_l9r_go_relaxed.owl parthenogenesis Wikipedia:Asexual_reproduction biological_process owl:Class GO:0099008 biolink:NamedThing viral entry via permeabilization of inner membrane The entry of a non-enveloped virus into the cytoplasm of a host prokaryotic cell, following fusion with the outer membrane, via permeabilization of the plasma (inner) membrane. In the case of some double stranded RNA viruses of prokaryotes this occurs via interaction of a membrane-interacting component of the capsid, leading to depolarization an permeabilization of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl viral penetration via permeabilization of host membrane VZ:985 biological_process owl:Class GO:0140267 biolink:NamedThing viral entry via permeabilization of host membrane The entry of a virus into the cytoplasm of a host cell, triggered by an interaction between the bilayer of a host membrane and a membrane-penetration capsid protein. Results in release of the virus contents into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-25T14:33:03Z biological_process owl:Class GO:1902078 biolink:NamedThing positive regulation of lateral motor column neuron migration Any process that activates or increases the frequency, rate or extent of lateral motor column neuron migration. tmpzr1t_l9r_go_relaxed.owl activation of lateral motor column neuron migration|up-regulation of lateral motor column neuron migration|upregulation of lateral motor column neuron migration|up regulation of lateral motor column neuron migration pr 2013-04-23T14:42:28Z biological_process owl:Class GO:1902076 biolink:NamedThing regulation of lateral motor column neuron migration Any process that modulates the frequency, rate or extent of lateral motor column neuron migration. tmpzr1t_l9r_go_relaxed.owl pr 2013-04-23T14:42:18Z biological_process owl:Class GO:0033262 biolink:NamedThing regulation of nuclear cell cycle DNA replication Any process that modulates the frequency, rate or extent of The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of DNA replication involved in S-phase|regulation of DNA replication during S phase|regulation of DNA replication involved in S phase biological_process owl:Class GO:0035189 biolink:NamedThing Rb-E2F complex A multiprotein complex containing a heterodimeric E2F transcription factor and a Retinoblastoma (Rb) family member. This complex is capable of repressing transcription of E2F-regulated genes in order to regulate cell cycle progression. tmpzr1t_l9r_go_relaxed.owl retinoblastoma-E2F complex cellular_component owl:Class GO:0015885 biolink:NamedThing 5-formyltetrahydrofolate transport The directed movement of 5-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate, into, out of, within, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006835 biolink:NamedThing dicarboxylic acid transport The directed movement of dicarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sodium:dicarboxylate transport GO:0006841 biological_process owl:Class GO:0071656 biolink:NamedThing negative regulation of granulocyte colony-stimulating factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of granulocyte colony stimulating factor. tmpzr1t_l9r_go_relaxed.owl negative regulation of colony stimulating factor 3 (granulocyte) production|negative regulation of CSF3 production|negative regulation of filgrastim production|negative regulation of pluripoietin production|negative regulation of G-CSF production|negative regulation of granulocyte colony stimulating factor production|negative regulation of lenograstim production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:1901257 biolink:NamedThing negative regulation of macrophage colony-stimulating factor production Any process that stops, prevents or reduces the frequency, rate or extent of macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl down regulation of M-CSF production|downregulation of M-CSF production|downregulation of macrophage colony-stimulating factor production|inhibition of macrophage colony-stimulating factor production|down-regulation of macrophage colony-stimulating factor production|down-regulation of M-CSF production|down regulation of macrophage colony-stimulating factor production|inhibition of M-CSF production|negative regulation of M-CSF production vk 2012-08-10T08:28:28Z biological_process owl:Class GO:1900714 biolink:NamedThing negative regulation of violaceol I biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of violaceol I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of violaceol I formation|down-regulation of violaceol I biosynthetic process|downregulation of violaceol I biosynthesis|down-regulation of violaceol I biosynthesis|downregulation of violaceol I biosynthetic process|inhibition of violaceol I anabolism|inhibition of violaceol I biosynthesis|downregulation of violaceol I formation|down-regulation of violaceol I anabolism|down regulation of violaceol I anabolism|downregulation of violaceol I anabolism|negative regulation of violaceol I anabolism|down regulation of violaceol I biosynthesis|negative regulation of violaceol I biosynthesis|down regulation of violaceol I biosynthetic process|negative regulation of violaceol I synthesis|down-regulation of violaceol I synthesis|inhibition of violaceol I biosynthetic process|inhibition of violaceol I formation|inhibition of violaceol I synthesis|negative regulation of violaceol I formation|down regulation of violaceol I synthesis|downregulation of violaceol I synthesis|down-regulation of violaceol I formation di 2012-05-22T05:04:33Z biological_process owl:Class GO:0048138 biolink:NamedThing germ-line cyst encapsulation Formation of a single follicular epithelium around the germ-line derived cells of a cyst. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003006 biolink:NamedThing developmental process involved in reproduction A developmental process in which a progressive change in the state of some part of an organism, germline or somatic, specifically contributes to its ability to form offspring. tmpzr1t_l9r_go_relaxed.owl puberty|reproductive developmental process biological_process owl:Class GO:0071263 biolink:NamedThing negative regulation of translational initiation in response to starvation Any process that stops, prevents or reduces the rate of translation initiation, as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl negative regulation of translational initiation in response to nutrient starvation|downregulation of translation initiation in response to starvation|down regulation of translation initiation in response to starvation|down-regulation of translation initiation in response to starvation|inhibition of translation initiation in response to starvation mah 2009-12-08T05:33:12Z biological_process owl:Class GO:0032057 biolink:NamedThing negative regulation of translational initiation in response to stress Any process that stops, prevents or reduces the rate of translation initiation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl down-regulation of translation initiation in response to stress|downregulation of translation initiation in response to stress|inhibition of translation initiation in response to stress|down regulation of translation initiation in response to stress biological_process owl:Class GO:1901255 biolink:NamedThing nucleotide-excision repair involved in interstrand cross-link repair Any nucleotide-excision repair that is involved in interstrand cross-link repair. tmpzr1t_l9r_go_relaxed.owl NER involved in ICL repair|nucleotide-excision repair involved in ICL repair|NER involved in interstrand cross-link repair vw 2012-08-09T06:09:50Z biological_process owl:Class GO:0006289 biolink:NamedThing nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair, DNA damage excision|intrastrand cross-link repair|NER Note that although intrastrand cross-link repair is not exactly synonymous with nucleotide excision repair, nucleotide excision repair includes the repair of intrastrand cross-links. The synonym field is being used to reflect the broad substrate specificity of nucleotide excision repair. GO:0045001 biological_process owl:Class GO:0032707 biolink:NamedThing negative regulation of interleukin-23 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-23 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-23 biosynthetic process|inhibition of interleukin-23 production|downregulation of interleukin-23 production|down-regulation of interleukin-23 production|negative regulation of IL-23 production|down regulation of interleukin-23 production GO:0045397 biological_process owl:Class GO:0032667 biolink:NamedThing regulation of interleukin-23 production Any process that modulates the frequency, rate, or extent of interleukin-23 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-23 production|regulation of interleukin-23 synthesis|regulation of interleukin-23 biosynthesis|regulation of IL-23 biosynthetic process|regulation of interleukin-23 biosynthetic process|regulation of interleukin-23 anabolism|regulation of interleukin-23 formation GO:0045396 biological_process owl:Class GO:1901264 biolink:NamedThing carbohydrate derivative transport The directed movement of a carbohydrate derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-16T14:51:22Z biological_process owl:Class GO:0090042 biolink:NamedThing tubulin deacetylation The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:50:47Z biological_process owl:Class GO:0006476 biolink:NamedThing protein deacetylation The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid deacetylation biological_process owl:Class GO:1900258 biolink:NamedThing positive regulation of beta1-adrenergic receptor activity Any process that activates or increases the frequency, rate or extent of beta1-adrenergic receptor activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of beta1-adrenergic receptor activity|positive regulation of beta1 adrenoceptor|up regulation of beta1-adrenergic receptor activity|upregulation of beta1-adrenergic receptor activity|up regulation of beta1 adrenoceptor|activation of beta1 adrenoceptor|up-regulation of beta1 adrenoceptor|activation of beta1-adrenergic receptor activity|upregulation of beta1 adrenoceptor tb 2012-04-03T10:59:49Z biological_process owl:Class GO:0150127 biolink:NamedThing regulation of interleukin-33 production Any process that modulates the frequency, rate or extent of interleukin-33 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-33 secretion|regulation of interleukin-33 biosynthetic process bc 2019-12-03T05:54:03Z GO:0150130|GO:0150123 biological_process owl:Class GO:0010629 biolink:NamedThing negative regulation of gene expression Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl gene silencing This term covers any process that negatively regulates the rate of production of a mature gene product, and so includes processes that negatively regulate that rate by reducing the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that reduces the level, stability or availability of mRNA or circRNA for translation and thereby reduces the rate of production of the encoded protein via translation. biological_process owl:Class GO:0071480 biolink:NamedThing cellular response to gamma radiation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. tmpzr1t_l9r_go_relaxed.owl cellular response to gamma ray|cellular response to gamma-ray photon mah 2009-12-18T02:00:50Z biological_process owl:Class GO:0010332 biolink:NamedThing response to gamma radiation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. tmpzr1t_l9r_go_relaxed.owl response to gamma ray|response to gamma-ray photon biological_process owl:Class GO:1900606 biolink:NamedThing tensidol B metabolic process The chemical reactions and pathways involving tensidol B. tmpzr1t_l9r_go_relaxed.owl tensidol B metabolism di 2012-05-15T06:58:21Z biological_process owl:Class GO:0044149 biolink:NamedThing positive regulation of formation of structure involved in a symbiotic process Any process that activates or increases the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of development of symbiont involved in interaction with host|positive regulation of development of symbiont during interaction with host https://github.com/geneontology/go-ontology/issues/20305 This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont during interaction with host ; GO:0075339'. See also 'positive regulation of growth of symbiont during interaction with host ; GO:0044148'. jl 2009-08-06T02:20:55Z biological_process owl:Class GO:0048518 biolink:NamedThing positive regulation of biological process Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. tmpzr1t_l9r_go_relaxed.owl upregulation of biological process|positive regulation of physiological process|up regulation of biological process|activation of biological process|up-regulation of biological process|stimulation of biological process GO:0043119 biological_process owl:Class GO:0052765 biolink:NamedThing reduced coenzyme F420 oxidase activity Catalysis of the reaction: 2 reduced coenzyme F420 + O2 = 2 coenzyme F420 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl F420H2:oxygen oxidoreductase activity|coenzyme F420H2 oxidase activity|F420H2 oxidase activity ai 2011-09-29T04:33:54Z molecular_function owl:Class GO:0033634 biolink:NamedThing positive regulation of cell-cell adhesion mediated by integrin Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell-cell adhesion mediated by integrin complex biological_process owl:Class GO:0022409 biolink:NamedThing positive regulation of cell-cell adhesion Any process that activates or increases the rate or extent of cell adhesion to another cell. tmpzr1t_l9r_go_relaxed.owl upregulation of cell-cell adhesion|stimulation of cell-cell adhesion|up regulation of cell-cell adhesion|up-regulation of cell-cell adhesion|activation of cell-cell adhesion biological_process owl:Class GO:0014838 biolink:NamedThing myoblast fate specification involved in skeletal muscle regeneration The process in which a satellite cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048626 biolink:NamedThing myoblast fate specification The process in which a cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150200 biolink:NamedThing regulation of transport across blood-brain barrier Any process that modulates the frequency, rate or extent of transport across the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl bc 2020-03-26T19:22:26Z biological_process owl:Class GO:2001285 biolink:NamedThing negative regulation of BMP secretion Any process that stops, prevents or reduces the frequency, rate or extent of BMP secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of BMP protein secretion|negative regulation of bone morphogenetic protein secretion bf 2011-12-15T02:15:36Z biological_process owl:Class GO:0023057 biolink:NamedThing negative regulation of signaling Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. tmpzr1t_l9r_go_relaxed.owl negative regulation of signaling process|negative regulation of signalling process 2010-02-16T09:30:50Z biological_process owl:Class GO:0010903 biolink:NamedThing negative regulation of very-low-density lipoprotein particle remodeling Any process that decreases the rate, frequency or extent of very-low-density lipoprotein particle remodeling. Very-low-density lipoprotein particle remodeling is the acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl negative regulation of VLDL remodeling biological_process owl:Class GO:0010901 biolink:NamedThing regulation of very-low-density lipoprotein particle remodeling Any process that modulates the rate, frequency or extent of very-low-density lipoprotein particle remodeling. Very-low-density lipoprotein particle remodeling is the acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl regulation of VLDL remodeling biological_process owl:Class GO:0061358 biolink:NamedThing negative regulation of Wnt protein secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of a Wnt protein from a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-08T01:15:15Z biological_process owl:Class GO:0018905 biolink:NamedThing dimethyl ether metabolic process The chemical reactions and pathways involving dimethyl ether, CH3-O-CH3, the simplest ether. Dimethyl ether, also known wood ether and methyl ether, is a colorless gas that has been used in refrigeration applications. tmpzr1t_l9r_go_relaxed.owl dimethyl ether metabolism|methyl ether metabolism|methyl ether metabolic process UM-BBD_pathwayID:dme biological_process owl:Class GO:0006805 biolink:NamedThing xenobiotic metabolic process The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug metabolic process|drug metabolism|xenobiotic metabolism https://github.com/geneontology/go-ontology/issues/19460 Wikipedia:Drug_metabolism|Wikipedia:Xenobiotic_metabolism GO:0017144 biological_process owl:Class GO:0032665 biolink:NamedThing regulation of interleukin-21 production Any process that modulates the frequency, rate, or extent of interleukin-21 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-21 biosynthetic process|regulation of IL-21 production GO:0045390 biological_process owl:Class GO:0044610 biolink:NamedThing FMN transmembrane transporter activity Enables the directed movement of flavine mononucleotide (FMN) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl flavine mononucleotide transmembrane transporter activity jl 2012-05-30T03:09:19Z molecular_function owl:Class GO:1901505 biolink:NamedThing carbohydrate derivative transmembrane transporter activity Enables the transfer of carbohydrate derivative from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl carbohydrate derivative transporter activity pr 2012-10-17T10:31:22Z molecular_function owl:Class GO:0060340 biolink:NamedThing positive regulation of type I interferon-mediated signaling pathway Any process that increases the rate, frequency or extent of a type I interferon-mediated signaling pathway. A type I interferon-mediated signaling pathway is the series of molecular events generated as a consequence of a type I interferon binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of type I interferon-mediated signalling pathway biological_process owl:Class GO:0045089 biolink:NamedThing positive regulation of innate immune response Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. tmpzr1t_l9r_go_relaxed.owl stimulation of innate immune response|upregulation of innate immune response|up-regulation of innate immune response|up regulation of innate immune response biological_process owl:Class GO:1905920 biolink:NamedThing positive regulation of CoA-transferase activity Any process that activates or increases the frequency, rate or extent of CoA-transferase activity. tmpzr1t_l9r_go_relaxed.owl activation of CoA-transferase activity|upregulation of CoA-transferase activity|up regulation of CoA-transferase activity|up-regulation of CoA-transferase activity bc 2017-02-08T13:01:04Z biological_process owl:Class GO:1905918 biolink:NamedThing regulation of CoA-transferase activity Any process that modulates the frequency, rate or extent of CoA-transferase activity. tmpzr1t_l9r_go_relaxed.owl bc 2017-02-08T13:00:48Z biological_process owl:Class GO:0035807 biolink:NamedThing positive regulation of blood coagulation in other organism Any process in which an organism activates, maintains or increases the frequency, rate or extent of blood coagulation in another organism. Blood coagulation is the sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot. tmpzr1t_l9r_go_relaxed.owl positive regulation of blood clotting in other organism|positive regulation by organism of blood clotting in other organism|positive regulation by organism of blood coagulation in other organism bf 2011-04-20T11:43:37Z biological_process owl:Class GO:0035806 biolink:NamedThing modulation of blood coagulation in other organism Any process in which an organism modulates the frequency, rate or extent of blood coagulation in another organism. Blood coagulation is the sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot. tmpzr1t_l9r_go_relaxed.owl modulation by organism of blood clotting in other organism|regulation of blood coagulation in other organism|regulation by organism of blood clotting in other organism|regulation of blood clotting in other organism|modulation by organism of blood coagulation in other organism bf 2011-04-20T11:38:49Z biological_process owl:Class GO:0048215 biolink:NamedThing positive regulation of Golgi vesicle fusion to target membrane Any process that activates or increases the frequency, rate or extent of Golgi vesicle fusion to target membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of Golgi vesicle fusion to target membrane|stimulation of Golgi vesicle fusion to target membrane|activation of Golgi vesicle fusion to target membrane|up regulation of Golgi vesicle fusion to target membrane|upregulation of Golgi vesicle fusion to target membrane biological_process owl:Class GO:0031340 biolink:NamedThing positive regulation of vesicle fusion Any process that activates or increases the frequency, rate or extent of vesicle fusion. tmpzr1t_l9r_go_relaxed.owl activation of vesicle fusion|up regulation of vesicle fusion|upregulation of vesicle fusion|stimulation of vesicle fusion|up-regulation of vesicle fusion biological_process owl:Class GO:0052702 biolink:NamedThing cellular modified histidine catabolic process The chemical reactions and pathways resulting in the breakdown of compounds derived from histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl cellular histidine derivative catabolic process|histidine derivative catabolic process|cellular modified histidine degradation|modified histidine catabolic process|cellular histidine derivative degradation|modified histidine catabolism|cellular histidine derivative breakdown|cellular modified histidine catabolism|cellular modified histidine breakdown|cellular histidine derivative catabolism ai 2011-08-01T03:48:41Z biological_process owl:Class GO:0071547 biolink:NamedThing piP-body A P granule that contains the PIWIL4-TDRD9 module, a set of proteins that act in the secondary piRNA pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-12T05:47:47Z cellular_component owl:Class GO:0019095 biolink:NamedThing pole plasm mitochondrial rRNA localization Any process in which mitochondrial ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of mitochondrial rRNA localization in pole plasm|pole plasm mitochondrial rRNA localisation|oocyte pole plasm mitochondrial rRNA localization GO:0048117 biological_process owl:Class GO:0007316 biolink:NamedThing pole plasm RNA localization Any process in which RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte pole plasm RNA localization|establishment and maintenance of pole plasm RNA localization|pole plasm RNA localisation GO:0048116 biological_process owl:Class GO:0102956 biolink:NamedThing UDP-glucose:sinapaldehyde 4-beta-D-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + sinapoyl aldehyde = H+ + sinapaldehyde glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-92|RHEA:57712 molecular_function owl:Class GO:1905837 biolink:NamedThing cellular response to triterpenoid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triterpenoid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2017-01-17T19:37:44Z biological_process owl:Class GO:0071396 biolink:NamedThing cellular response to lipid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:37:10Z biological_process owl:Class GO:0044062 biolink:NamedThing regulation of excretion Any process that modulates the frequency, rate, or extent of excretion, the elimination by an organism of the waste products that arise as a result of metabolic activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031078 biolink:NamedThing histone deacetylase activity (H3-K14 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 14) + H2O = histone H3 L-lysine (position 14) + acetate. This reaction represents the removal of an acetyl group from lysine at position 14 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004407 biolink:NamedThing histone deacetylase activity Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22295 Reactome:R-HSA-3782637|Reactome:R-HSA-2545203|Reactome:R-HSA-3782655|Reactome:R-HSA-433672|RHEA:58196|Reactome:R-HSA-3777129|Reactome:R-HSA-6805650|Reactome:R-HSA-3769447|Reactome:R-HSA-2545253|MetaCyc:3.5.1.98-RXN|EC:3.5.1.98|Reactome:R-HSA-427514 molecular_function owl:Class GO:1903454 biolink:NamedThing regulation of androst-4-ene-3,17-dione biosynthetic process Any process that modulates the frequency, rate or extent of androst-4-ene-3,17-dione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of androstenedione biosynthetic process|regulation of androst-4-ene-3,17-dione biosynthesis|regulation of androst-4-ene-3,17-dione synthesis|regulation of androst-4-ene-3,17-dione formation|regulation of androst-4-ene-3,17-dione anabolism mr 2014-09-22T14:36:50Z biological_process owl:Class GO:0010566 biolink:NamedThing regulation of ketone biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a ketone, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904263 biolink:NamedThing positive regulation of TORC1 signaling Any process that activates or increases the frequency, rate or extent of TORC1 signaling. tmpzr1t_l9r_go_relaxed.owl up regulation of TORC1 signal transduction|up-regulation of TORC1 signaling|activation of TORC1 signal transduction|activation of TORC1 signaling|positive regulation of TORC1 signal transduction|upregulation of TORC1 signal transduction|upregulation of TORC1 signaling|up-regulation of TORC1 signal transduction|up regulation of TORC1 signaling lb 2015-05-27T13:13:10Z biological_process owl:Class GO:0032008 biolink:NamedThing positive regulation of TOR signaling Any process that activates or increases the frequency, rate or extent of TOR signaling. tmpzr1t_l9r_go_relaxed.owl activation of TOR signaling pathway|positive regulation of TOR signaling cascade|up-regulation of TOR signaling pathway|stimulation of TOR signaling pathway|upregulation of TOR signaling pathway|positive regulation of target of rapamycin signalling pathway|up regulation of TOR signaling pathway|positive regulation of TOR signaling pathway|positive regulation of target of rapamycin signaling pathway|positive regulation of TOR signalling pathway biological_process owl:Class GO:0061546 biolink:NamedThing tyramine secretion, neurotransmission The regulated release of a tyramine by a cell in which the tyramine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-25T09:16:47Z biological_process owl:Class GO:0061532 biolink:NamedThing primary amine secretion, neurotransmission The regulated release of a primary amine by a cell, in which the primary amine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:57:12Z biological_process owl:Class GO:0050908 biolink:NamedThing detection of light stimulus involved in visual perception The series of events involved in visual perception in which a light stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl visual perception, sensory transduction of light stimulus|sensory transduction of light during visual perception|sensory transduction of light stimulus during visual perception|visual perception, sensory transduction during perception of light|visual perception, detection of light stimulus|sensory detection of light during visual perception|sensory detection of light stimulus during visual perception biological_process owl:Class GO:0050962 biolink:NamedThing detection of light stimulus involved in sensory perception The series of events in which a light stimulus is received by a cell and converted into a molecular signal as part of the sensory perception of light. tmpzr1t_l9r_go_relaxed.owl sensory perception, sensory detection of light stimulus|sensory transduction of light stimulus during sensory perception|sensory detection of light stimulus during sensory perception|sensory perception, sensory transduction of light stimulus|sensory transduction of light stimulus|sensory detection of light stimulus biological_process owl:Class GO:0051169 biolink:NamedThing nuclear transport The directed movement of substances into, out of, or within the nucleus. tmpzr1t_l9r_go_relaxed.owl nucleus transport Wikipedia:Nuclear_transport biological_process owl:Class GO:0035157 biolink:NamedThing negative regulation of fusion cell fate specification Any process that restricts, stops or prevents a cell from adopting a fusion cell fate. Once the terminal and fusion fates have been correctly induced, inhibitory feedback loops prevent the remaining branch cells from assuming similar fates. tmpzr1t_l9r_go_relaxed.owl downregulation of fusion cell fate specification|inhibition of fusion cell fate specification|down regulation of fusion cell fate specification|down-regulation of fusion cell fate specification biological_process owl:Class GO:0009996 biolink:NamedThing negative regulation of cell fate specification Any process that restricts, stops or prevents a cell from adopting a specific cell fate. tmpzr1t_l9r_go_relaxed.owl suppression of cell fate|down regulation of cell fate specification|down-regulation of cell fate specification|downregulation of cell fate specification|inhibition of cell fate specification biological_process owl:Class GO:0071203 biolink:NamedThing WASH complex A protein complex that localizes at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization. In human, the WASH complex is composed of F-actin-capping protein subunits alpha and beta, WASH1, FAM21, KIAA1033, KIAA0196 and CCDC53. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-25T11:01:33Z cellular_component owl:Class GO:0061013 biolink:NamedThing regulation of mRNA catabolic process Any process that modulates the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA decay dph 2010-01-29T01:48:10Z biological_process owl:Class GO:1903311 biolink:NamedThing regulation of mRNA metabolic process Any process that modulates the frequency, rate or extent of mRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA metabolism vw 2014-08-18T11:52:26Z biological_process owl:Class GO:1904527 biolink:NamedThing negative regulation of microtubule binding Any process that stops, prevents or reduces the frequency, rate or extent of microtubule binding. tmpzr1t_l9r_go_relaxed.owl down-regulation of microtubule/chromatin interaction|inhibition of microtubule severing activity|downregulation of microtubule severing activity|inhibition of microtubule binding|down regulation of microtubule severing activity|down regulation of microtubule/chromatin interaction|down-regulation of microtubule severing activity|down regulation of microtubule binding|negative regulation of microtubule/chromatin interaction|inhibition of microtubule/chromatin interaction|down-regulation of microtubule binding|downregulation of microtubule binding|downregulation of microtubule/chromatin interaction|negative regulation of microtubule severing activity als 2015-07-30T10:32:29Z biological_process owl:Class GO:1904526 biolink:NamedThing regulation of microtubule binding Any process that modulates the frequency, rate or extent of microtubule binding. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule/chromatin interaction|regulation of microtubule severing activity als 2015-07-30T10:32:13Z biological_process owl:Class GO:0018417 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide The incorporation of iron into a 3Fe-2S cluster by tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido L-glutamato L-histidino L-serinyl nickel triiron disulphide trioxide RESID:AA0293 biological_process owl:Class GO:0018200 biolink:NamedThing peptidyl-glutamic acid modification The modification of peptidyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048928 biolink:NamedThing posterior lateral line ganglion neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron of the posterior lateral line ganglion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048891 biolink:NamedThing lateral line ganglion neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a lateral line ganglion neuron. tmpzr1t_l9r_go_relaxed.owl gLL neuron differentiation biological_process owl:Class GO:0075289 biolink:NamedThing aplanospore formation The process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034300 biolink:NamedThing sporangiospore formation The process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000303 biolink:NamedThing regulation of ceramide biosynthetic process Any process that modulates the frequency, rate or extent of a ceramide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ceramide formation|regulation of ceramide anabolism|regulation of ceramide synthesis|regulation of ceramide biosynthesis dph 2011-01-04T02:37:12Z biological_process owl:Class GO:2000899 biolink:NamedThing xyloglucan catabolic process The chemical reactions and pathways resulting in the breakdown of a xyloglucan. tmpzr1t_l9r_go_relaxed.owl xyloglucan catabolism jl 2011-07-28T02:52:33Z biological_process owl:Class GO:0010411 biolink:NamedThing xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. tmpzr1t_l9r_go_relaxed.owl xyloglucan metabolism biological_process owl:Class GO:1905494 biolink:NamedThing negative regulation of G-quadruplex DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of G-quadruplex DNA binding. tmpzr1t_l9r_go_relaxed.owl down-regulation of G-quartet DNA binding|inhibition of G-quartet DNA binding|negative regulation of G-DNA binding|inhibition of G-DNA binding|inhibition of tetraplex DNA binding|downregulation of quadruplex DNA binding|down regulation of tetraplex DNA binding|down-regulation of G-quadruplex DNA binding|downregulation of G-DNA binding|down-regulation of quadruplex DNA binding|down regulation of G-DNA binding|down regulation of quadruplex DNA binding|negative regulation of quadruplex DNA binding|down regulation of G quadruplex DNA binding|down-regulation of G-DNA binding|negative regulation of G-quartet DNA binding|inhibition of quadruplex DNA binding|inhibition of G quartet DNA binding|down regulation of G-quartet DNA binding|negative regulation of G quadruplex DNA binding|down-regulation of tetraplex DNA binding|downregulation of G-quartet DNA binding|negative regulation of tetraplex DNA binding|downregulation of tetraplex DNA binding|negative regulation of G quartet DNA binding|inhibition of G quadruplex DNA binding|downregulation of G-quadruplex DNA binding|down regulation of G-quadruplex DNA binding|downregulation of G quadruplex DNA binding|inhibition of G-quadruplex DNA binding|down-regulation of G quadruplex DNA binding|down regulation of G quartet DNA binding|down-regulation of G quartet DNA binding|downregulation of G quartet DNA binding ans 2016-09-26T14:53:29Z biological_process owl:Class GO:0010851 biolink:NamedThing cyclase regulator activity Binds to and modulates the activity of an enzyme that catalyzes a ring closure reaction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030234 biolink:NamedThing enzyme regulator activity Binds to and modulates the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl catalytic regulator activity|enzyme modulator|metalloenzyme regulator activity This term should only be used in cases when the regulator directly interacts with the enzyme. GO:0010576 molecular_function owl:Class GO:0048094 biolink:NamedThing male pigmentation Establishment of a pattern of pigment in males. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048071 biolink:NamedThing sex-specific pigmentation Establishment of a pattern of pigment in one sex that is not observed in the other sex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030096 biolink:NamedThing plasma membrane-derived thylakoid photosystem II A protein complex, located in the membrane-derived thylakoid, containing the P680 reaction center. In the light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone. tmpzr1t_l9r_go_relaxed.owl plasma membrane photosystem II cellular_component owl:Class GO:0072755 biolink:NamedThing cellular response to benomyl Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benomyl stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T12:06:58Z biological_process owl:Class GO:0010527 biolink:NamedThing positive regulation of transposition, RNA-mediated Any process that increases the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010530 biolink:NamedThing positive regulation of transposition Any process that increases the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031139 biolink:NamedThing positive regulation of conjugation with cellular fusion Any process that increases the rate or frequency of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl activation of conjugation with cellular fusion|stimulation of conjugation with cellular fusion|upregulation of conjugation with cellular fusion|up-regulation of conjugation with cellular fusion|up regulation of conjugation with cellular fusion biological_process owl:Class GO:0031136 biolink:NamedThing positive regulation of conjugation Any process that increases the rate or frequency of conjugation. tmpzr1t_l9r_go_relaxed.owl activation of conjugation|upregulation of conjugation|stimulation of conjugation|up regulation of conjugation|up-regulation of conjugation biological_process owl:Class GO:0090211 biolink:NamedThing positive regulation of establishment of blood-brain barrier Any process that increases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain. tmpzr1t_l9r_go_relaxed.owl positive regulation of establishment of BBB tb 2009-12-23T12:15:53Z biological_process owl:Class GO:0051240 biolink:NamedThing positive regulation of multicellular organismal process Any process that activates or increases the frequency, rate or extent of an organismal process, any of the processes pertinent to the function of an organism above the cellular level; includes the integrated processes of tissues and organs. tmpzr1t_l9r_go_relaxed.owl up-regulation of multicellular organismal process|activation of multicellular organismal process|stimulation of multicellular organismal process|up regulation of multicellular organismal process|upregulation of multicellular organismal process biological_process owl:Class GO:0140454 biolink:NamedThing protein aggregate center assembly The reversible aggregation of misfolded proteins and chaperones, formed to shield thermosensitive proteins from degradation until conditions allow disaggregation and refolding. tmpzr1t_l9r_go_relaxed.owl protein aggregate centre assembly|PAC assembly|protein aggregate center formation https://github.com/geneontology/go-ontology/issues/19172 pg 2020-04-20T15:43:52Z biological_process owl:Class GO:0022607 biolink:NamedThing cellular component assembly The aggregation, arrangement and bonding together of a cellular component. tmpzr1t_l9r_go_relaxed.owl cell structure assembly|cellular component assembly at cellular level GO:0071844 biological_process owl:Class GO:0048088 biolink:NamedThing regulation of male pigmentation Any process that modulates the frequency, rate or extent of establishment of a pattern of pigment in males. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062093 biolink:NamedThing lysophagy The selective autophagy process in which a damaged lysosome is degraded by macroautophagy. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-20T16:47:11Z biological_process owl:Class GO:0061912 biolink:NamedThing selective autophagy The macroautophagy process in which specific structures are targeted by the autophagy process. tmpzr1t_l9r_go_relaxed.owl dph 2017-07-07T17:27:37Z biological_process owl:Class GO:0042100 biolink:NamedThing B cell proliferation The expansion of a B cell population by cell division. Follows B cell activation. tmpzr1t_l9r_go_relaxed.owl B lymphocyte proliferation|B-lymphocyte proliferation|B-cell proliferation GO:0042114 biological_process owl:Class GO:0042113 biolink:NamedThing B cell activation The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl B-cell activation|B lymphocyte activation|B-lymphocyte activation biological_process owl:Class GO:0015067 biolink:NamedThing amidinotransferase activity Catalysis of the reversible transfer of an amidino group to an acceptor. tmpzr1t_l9r_go_relaxed.owl transamidinase activity EC:2.1.4.- molecular_function owl:Class GO:0016741 biolink:NamedThing transferase activity, transferring one-carbon groups Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl methyltransferase activity https://github.com/geneontology/go-ontology/issues/20486 EC:2.1.-.- molecular_function owl:Class GO:1901218 biolink:NamedThing negative regulation of holin activity Any process that stops, prevents or reduces the frequency, rate or extent of holin activity. tmpzr1t_l9r_go_relaxed.owl inhibition of holin activity|down-regulation of holin activity|downregulation of holin activity|antiholin activity|down regulation of holin activity|phage antiholin bf 2012-08-06T10:48:00Z biological_process owl:Class GO:0032410 biolink:NamedThing negative regulation of transporter activity Any process that stops or reduces the activity of a transporter. tmpzr1t_l9r_go_relaxed.owl downregulation of transporter activity|down-regulation of transporter activity|down regulation of transporter activity|inhibition of transporter activity biological_process owl:Class GO:0044634 biolink:NamedThing negative regulation of complement activation, alternative pathway in other organism Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the alternative pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:32:55Z biological_process owl:Class GO:0044633 biolink:NamedThing modulation of complement activation, alternative pathway in other organism A process that modulates the frequency, rate or extent of complement activation, via the alternative pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl regulation of complement activation, alternative pathway in other organism jl 2012-07-05T04:24:08Z biological_process owl:Class GO:0061981 biolink:NamedThing 3-hydroxykynureninase activity Catalysis of the reaction: L-3-hydroxykynurenine + H2O = 3-hydroxyanthranilate + L-alanine. tmpzr1t_l9r_go_relaxed.owl RHEA:25143 dph 2018-02-14T16:12:49Z molecular_function owl:Class GO:0045834 biolink:NamedThing positive regulation of lipid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving lipids. tmpzr1t_l9r_go_relaxed.owl activation of lipid metabolic process|up-regulation of lipid metabolic process|up regulation of lipid metabolic process|positive regulation of lipid metabolism|stimulation of lipid metabolic process|upregulation of lipid metabolic process biological_process owl:Class GO:0052751 biolink:NamedThing GDP-mannose hydrolase activity Catalysis of the reaction: GDP-mannose + H2O = GMP + mannose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl GDP-mannose pyrophosphatase activity ai 2011-09-21T04:11:30Z molecular_function owl:Class GO:0062043 biolink:NamedThing positive regulation of cardiac epithelial to mesenchymal transition Any process that starts or increases the rate, frequency or extent of cardiac epithelial to mesenchymal transition, a transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-10T18:15:54Z biological_process owl:Class GO:1901940 biolink:NamedThing (-)-exo-alpha-bergamotene biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-exo-alpha-bergamotene. tmpzr1t_l9r_go_relaxed.owl (-)-exo-alpha-bergamotene synthesis|(-)-exo-alpha-bergamotene biosynthesis|(-)-exo-alpha-bergamotene anabolism|(-)-exo-alpha-bergamotene formation ms 2013-02-18T14:55:32Z biological_process owl:Class GO:0034603 biolink:NamedThing pyruvate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: pyruvate + CoA + NAD(P)+ = acetyl-CoA + CO2 + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004738 biolink:NamedThing pyruvate dehydrogenase activity Catalysis of the oxidative decarboxylation of pyruvate. tmpzr1t_l9r_go_relaxed.owl pyruvic acid dehydrogenase activity|pyruvic dehydrogenase activity MetaCyc:PYRUVOXID-RXN|MetaCyc:RXN0-1134|Reactome:R-HSA-71397 molecular_function owl:Class GO:0019335 biolink:NamedThing 3-methylquinoline catabolic process The chemical reactions and pathways resulting in the breakdown of 3-methylquinoline, C10H9N, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring. tmpzr1t_l9r_go_relaxed.owl 3-methylquinoline degradation|3-methylquinoline breakdown|3-methylquinoline catabolism MetaCyc:PWY-721 biological_process owl:Class GO:0006216 biolink:NamedThing cytidine catabolic process The chemical reactions and pathways resulting in the breakdown of cytidine, cytosine riboside, a widely distributed nucleoside. tmpzr1t_l9r_go_relaxed.owl cytidine catabolism|cytidine breakdown|cytidine degradation biological_process owl:Class GO:0046087 biolink:NamedThing cytidine metabolic process The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside. tmpzr1t_l9r_go_relaxed.owl cytidine metabolism biological_process owl:Class GO:0015931 biolink:NamedThing nucleobase-containing compound transport The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide and nucleic acid transport biological_process owl:Class GO:0071705 biolink:NamedThing nitrogen compound transport The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-08T03:56:28Z biological_process owl:Class GO:0090381 biolink:NamedThing regulation of heart induction Any process that modulates the rate, frequency, or extent of heart induction. Heart induction is the close range interaction between mesoderm and endoderm or ectoderm that causes cells to change their fates and specify the development of the heart. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-04T10:23:43Z biological_process owl:Class GO:0033088 biolink:NamedThing negative regulation of immature T cell proliferation in thymus Any process that stops, prevents, or reduces the frequency, rate or extent of immature T cell proliferation in the thymus. tmpzr1t_l9r_go_relaxed.owl negative regulation of thymocyte proliferation|negative regulation of thymic T cell proliferation|negative regulation of thymocyte cell proliferation biological_process owl:Class GO:0033087 biolink:NamedThing negative regulation of immature T cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of immature T cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000424 biolink:NamedThing positive regulation of eosinophil chemotaxis Any process that activates or increases the frequency, rate or extent of eosinophil chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-24T01:17:35Z biological_process owl:Class GO:2000422 biolink:NamedThing regulation of eosinophil chemotaxis Any process that modulates the frequency, rate or extent of eosinophil chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-24T01:16:44Z biological_process owl:Class GO:0042198 biolink:NamedThing nylon metabolic process The chemical reactions and pathways involving nylon, a polymer where the main polymer chain comprises recurring amide groups; these compounds are generally formed from combinations of diamines, diacids and amino acids. tmpzr1t_l9r_go_relaxed.owl nylon metabolism biological_process owl:Class GO:0000758 biolink:NamedThing agglutination involved in conjugation with mutual genetic exchange The aggregation or adhesion of compatible mating types via complementary cell-cell interactions during conjugation without cellular fusion of a unicellular organism. tmpzr1t_l9r_go_relaxed.owl sexual flocculation|agglutination involved in conjugation without cellular fusion biological_process owl:Class GO:0000771 biolink:NamedThing agglutination involved in conjugation The aggregation or adhesion of compatible mating types via complementary cell-cell interactions prior to the formation of irreversible cellular contacts during conjugation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903299 biolink:NamedThing regulation of hexokinase activity Any process that modulates the frequency, rate or extent of hexokinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of hexokinase (phosphorylating)|regulation of hexokinase D|regulation of ATP-dependent hexokinase activity|regulation of hexokinase type III activity|regulation of hexokinase type IV glucokinase activity|regulation of hexokinase type II activity|regulation of hexokinase type IV|regulation of hexokinase type IV (glucokinase) activity|regulation of glucose ATP phosphotransferase activity|regulation of hexokinase type I activity|regulation of ATP:D-hexose 6-phosphotransferase activity mr 2014-08-15T23:17:53Z biological_process owl:Class GO:0043549 biolink:NamedThing regulation of kinase activity Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060376 biolink:NamedThing positive regulation of mast cell differentiation Any process that increases the rate, frequency or extent of mast cell differentiation, the process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060375 biolink:NamedThing regulation of mast cell differentiation Any process that modulates the rate, frequency or extent of mast cell differentiation, the process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900070 biolink:NamedThing negative regulation of cellular hyperosmotic salinity response Any process that stops, prevents or reduces the frequency, rate or extent of cellular hyperosmotic salinity response. tmpzr1t_l9r_go_relaxed.owl inhibition of cellular response to hyperosmotic salt stress|inhibition of cellular hyperosmotic salinity response|down-regulation of cellular response to hyperosmotic salt stress|downregulation of cellular response to hyperosmotic salt stress|down-regulation of cellular hyperosmotic salinity response|negative regulation of cellular response to hyperosmotic salt stress|down regulation of cellular hyperosmotic salinity response|downregulation of cellular hyperosmotic salinity response|down regulation of cellular response to hyperosmotic salt stress pr 2012-01-26T02:45:43Z biological_process owl:Class GO:1901001 biolink:NamedThing negative regulation of response to salt stress Any process that stops, prevents or reduces the frequency, rate or extent of response to salt stress. tmpzr1t_l9r_go_relaxed.owl downregulation of response to ionic osmotic stress|inhibition of response to ionic osmotic stress|inhibition of response to salt stress|downregulation of salinity response|down-regulation of response to ionic osmotic stress|down regulation of response to salt stress|downregulation of response to salt stress|negative regulation of response to ionic osmotic stress|down-regulation of response to salt stress|down regulation of salinity response|down regulation of response to ionic osmotic stress|inhibition of salinity response|negative regulation of salinity response|down-regulation of salinity response dhl 2012-06-14T05:41:43Z biological_process owl:Class GO:1903109 biolink:NamedThing positive regulation of mitochondrial transcription Any process that activates or increases the frequency, rate or extent of transcription occuring in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl up regulation of mitochondrial transcription|activation of transcription from mitochondrial promoter|upregulation of transcription from mitochondrial promoter|upregulation of mitochondrial transcription|up-regulation of transcription from mitochondrial promoter|activation of mitochondrial transcription|up-regulation of mitochondrial transcription|positive regulation of transcription from mitochondrial promoter|up regulation of transcription from mitochondrial promoter al 2014-06-09T11:53:20Z biological_process owl:Class GO:1903108 biolink:NamedThing regulation of mitochondrial transcription Any process that modulates the frequency, rate or extent of transcription occuring in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from mitochondrial promoter al 2014-06-09T11:53:14Z biological_process owl:Class GO:1903832 biolink:NamedThing regulation of cellular response to amino acid starvation Any process that modulates the frequency, rate or extent of cellular response to amino acid starvation. tmpzr1t_l9r_go_relaxed.owl rn 2015-01-21T18:44:28Z biological_process owl:Class GO:0061534 biolink:NamedThing gamma-aminobutyric acid secretion, neurotransmission The regulated release of gamma-aminobutyric acid by a cell, in which the gamma-aminobutyric acid acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:10:50Z biological_process owl:Class GO:0016987 biolink:NamedThing sigma factor activity Sigma factors act as the promoter specificity subunit of eubacterial and plant plastid multisubunit RNA polymerases, whose core subunit composition is often described as alpha(2)-beta-beta-prime. Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, the sigma factor binds specifically to promoter elements. The sigma subunit is released once elongation begins. tmpzr1t_l9r_go_relaxed.owl core DNA-dependent RNA polymerase binding promoter specificity activity|plastid sigma factor activity|bacterial sigma factor activity|promoter selection factor activity|DNA-dependent RNA polymerase promoter selection factor|sigma transcription factor https://github.com/geneontology/go-ontology/issues/14848|https://github.com/geneontology/go-ontology/issues/15587 krc 2010-08-11T04:12:24Z GO:0001053|GO:0000996 molecular_function owl:Class GO:0071226 biolink:NamedThing cellular response to molecule of fungal origin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. tmpzr1t_l9r_go_relaxed.owl cellular response to fungus associated molecule mah 2009-12-03T01:50:01Z biological_process owl:Class GO:0002238 biolink:NamedThing response to molecule of fungal origin Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. tmpzr1t_l9r_go_relaxed.owl response to fungus associated molecule biological_process owl:Class GO:1900556 biolink:NamedThing emericellamide catabolic process The chemical reactions and pathways resulting in the breakdown of emericellamide. tmpzr1t_l9r_go_relaxed.owl emericellamide breakdown|emericellamide catabolism|emericellamide degradation di 2012-05-15T01:33:07Z biological_process owl:Class GO:1901335 biolink:NamedThing lactone catabolic process The chemical reactions and pathways resulting in the breakdown of lactone. tmpzr1t_l9r_go_relaxed.owl lactone catabolism|lactone breakdown|lactone degradation bf 2012-09-03T10:27:11Z biological_process owl:Class GO:0046512 biolink:NamedThing sphingosine biosynthetic process The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues. tmpzr1t_l9r_go_relaxed.owl sphingosine anabolism|sphingosine biosynthesis|sphingosine formation|sphingosine synthesis biological_process owl:Class GO:0046520 biolink:NamedThing sphingoid biosynthetic process The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds. tmpzr1t_l9r_go_relaxed.owl sphingoid anabolism|sphingoid synthesis|sphingoid biosynthesis|sphingoid formation biological_process owl:Class GO:0031382 biolink:NamedThing mating projection formation The aggregation, arrangement and bonding together of a set of components to form a cell projection in response to mating pheromone. This process is observed in unicellular fungi. tmpzr1t_l9r_go_relaxed.owl shmooing|mating projection biogenesis|mating projection assembly biological_process owl:Class GO:0120031 biolink:NamedThing plasma membrane bounded cell projection assembly Formation of a prolongation or process extending and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. tmpzr1t_l9r_go_relaxed.owl eupodium https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-24T23:56:08Z biological_process owl:Class GO:0004819 biolink:NamedThing glutamine-tRNA ligase activity Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln). tmpzr1t_l9r_go_relaxed.owl glutamine-tRNA synthetase activity|glutaminyl-transfer RNA synthetase activity|glutaminyl ribonucleic acid|L-glutamine:tRNAGln ligase (AMP-forming)|GlnRS|glutaminyl-tRNA synthetase activity|glutaminyl-transfer ribonucleate synthetase activity|glutamine translase activity Reactome:R-HSA-380241|RHEA:20121|Reactome:R-HSA-379982|EC:6.1.1.18|MetaCyc:GLUTAMINE--TRNA-LIGASE-RXN molecular_function owl:Class GO:0004788 biolink:NamedThing thiamine diphosphokinase activity Catalysis of the reaction: ATP + thiamine = AMP + thiamine diphosphate. tmpzr1t_l9r_go_relaxed.owl thiamine pyrophosphokinase activity|thiamin:ATP pyrophosphotransferase activity|thiamin pyrophosphotransferase activity|thiamin diphosphokinase activity|ATP:thiamin pyrophosphotransferase activity|thiaminokinase activity|ATP:thiamine diphosphotransferase activity|TPTase activity|thiamin pyrophosphokinase activity RHEA:11576|MetaCyc:THIAMIN-PYROPHOSPHOKINASE-RXN|Reactome:R-HSA-196761|EC:2.7.6.2 molecular_function owl:Class GO:0016778 biolink:NamedThing diphosphotransferase activity Catalysis of the transfer of a diphosphate group from one compound (donor) to a another (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.6.- molecular_function owl:Class GO:0050810 biolink:NamedThing regulation of steroid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of steroid synthesis|regulation of steroid biosynthesis|regulation of steroid anabolism|regulation of steroid formation|regulation of steroidogenesis biological_process owl:Class GO:0046890 biolink:NamedThing regulation of lipid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. tmpzr1t_l9r_go_relaxed.owl regulation of lipid synthesis|regulation of lipid biosynthesis|regulation of lipid formation|regulation of lipid anabolism|regulation of lipogenesis biological_process owl:Class GO:0008517 biolink:NamedThing folic acid transmembrane transporter activity Enables the transfer of folic acid (pteroylglutamic acid) from one side of a membrane to the other. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. tmpzr1t_l9r_go_relaxed.owl folate transporter activity|folic acid transporter activity|folate transmembrane transporter activity|vitamin B9 transporter activity|vitamin M transporter activity Reactome:R-HSA-200729|Reactome:R-HSA-200646|Reactome:R-HSA-200680|Reactome:R-HSA-200652|Reactome:R-HSA-200720 molecular_function owl:Class GO:0072349 biolink:NamedThing modified amino acid transmembrane transporter activity Enables the transfer of modified amino acids from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl amino acid derivative transmembrane transporter activity|modified amino acid transporter activity mah 2010-11-11T11:50:31Z molecular_function owl:Class GO:0035208 biolink:NamedThing positive regulation of hemocyte proliferation Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) that are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl positive regulation of arthropod blood cell proliferation|upregulation of hemocyte proliferation|up-regulation of hemocyte proliferation|stimulation of hemocyte proliferation|up regulation of hemocyte proliferation|activation of hemocyte proliferation biological_process owl:Class GO:0008284 biolink:NamedThing positive regulation of cell population proliferation Any process that activates or increases the rate or extent of cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell proliferation|upregulation of cell proliferation|stimulation of cell proliferation|activation of cell proliferation|up regulation of cell proliferation|positive regulation of cell proliferation biological_process owl:Class GO:0090343 biolink:NamedThing positive regulation of cell aging Any process that increases the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:12:37Z biological_process owl:Class GO:0010667 biolink:NamedThing negative regulation of cardiac muscle cell apoptotic process Any process that decreases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl down regulation of cardiac muscle cell apoptosis|inhibition of cardiac muscle cell apoptosis|down-regulation of cardiac muscle cell apoptosis|negative regulation of cardiac muscle cell apoptosis|downregulation of cardiac muscle cell apoptosis biological_process owl:Class GO:0010664 biolink:NamedThing negative regulation of striated muscle cell apoptotic process Any process that decreases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl down regulation of striated muscle cell apoptosis|inhibition of striated muscle cell apoptosis|negative regulation of striated muscle cell apoptosis|down-regulation of striated muscle cell apoptosis|downregulation of striated muscle cell apoptosis biological_process owl:Class GO:1905940 biolink:NamedThing negative regulation of gonad development Any process that stops, prevents or reduces the frequency, rate or extent of gonad development. tmpzr1t_l9r_go_relaxed.owl down regulation of gonad development|negative regulation of gonadogenesis|downregulation of gonad development|down-regulation of gonad development|down-regulation of gonadogenesis|inhibition of gonad development|downregulation of gonadogenesis|inhibition of gonadogenesis|down regulation of gonadogenesis hbye 2017-02-09T17:01:59Z biological_process owl:Class GO:2000242 biolink:NamedThing negative regulation of reproductive process Any process that stops, prevents, or reduces the frequency, rate or extent of reproductive process. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-10T02:44:05Z biological_process owl:Class GO:1900767 biolink:NamedThing fonsecin metabolic process The chemical reactions and pathways involving fonsecin. tmpzr1t_l9r_go_relaxed.owl fonsecin metabolism di 2012-06-04T09:21:14Z biological_process owl:Class GO:0014841 biolink:NamedThing skeletal muscle satellite cell proliferation The multiplication or reproduction of satellite cells, resulting in the expansion of the cell population. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fiber, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014856 biolink:NamedThing skeletal muscle cell proliferation The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904405 biolink:NamedThing cellular response to formaldehyde Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a formaldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T21:14:10Z biological_process owl:Class GO:0110096 biolink:NamedThing cellular response to aldehyde Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-16T21:29:18Z biological_process owl:Class GO:1990953 biolink:NamedThing intramanchette transport The movement of vesicles and protein complexes carried out by molecular motors, kinesins and dynein, along the microtubule tracks within the manchette and by myosin along actin filaments. tmpzr1t_l9r_go_relaxed.owl IMT krc 2016-05-11T00:17:56Z biological_process owl:Class GO:0098840 biolink:NamedThing protein transport along microtubule The directed movement of a protein along a microtubule, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl microtubule-based protein transport biological_process owl:Class GO:0018062 biolink:NamedThing peptidyl-tryptophan succinylation The modification of an N-terminal peptidyl-tryptophan residue to form peptidyl-N2-succinyl-L-tryptophan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0130 biological_process owl:Class GO:0031365 biolink:NamedThing N-terminal protein amino acid modification The alteration of the N-terminal amino acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl peptide or protein amino-terminal blocking|peptide/protein amino-terminal blocking GO:0018409 biological_process owl:Class GO:0009847 biolink:NamedThing spore germination The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). tmpzr1t_l9r_go_relaxed.owl spore germination on or near host GO:0075005 biological_process owl:Class GO:0030154 biolink:NamedThing cell differentiation The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cellular_differentiation biological_process owl:Class GO:0090360 biolink:NamedThing platelet-derived growth factor production The appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. tb 2010-07-12T10:32:27Z biological_process owl:Class GO:0001816 biolink:NamedThing cytokine production The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interferon production|cytokine metabolic process|cytokine secretion|interleukin production|cytokine biosynthetic process|interferon secretion|interleukin secretion https://github.com/geneontology/go-ontology/issues/19116 Note that this term is intended for use when a gene product is seen to cause apparent increases in intracellular or extracellular cytokine levels, without specific regard as to whether the increase is due to increased biosynthesis, increased secretion of preexisting cytokine molecules, or increased conversion from precursor molecules. GO:0042107|GO:0042089|GO:0050663|GO:0042032 biological_process owl:Class GO:0050382 biolink:NamedThing uracil-5-carboxylate decarboxylase activity Catalysis of the reaction: H(+) + uracil 5-carboxylate = CO(2) + uracil. tmpzr1t_l9r_go_relaxed.owl uracil-5-carboxylate carboxy-lyase (uracil-forming)|uracil-5-carboxylic acid decarboxylase activity|uracil-5-carboxylate carboxy-lyase activity EC:4.1.1.66|KEGG_REACTION:R00973|MetaCyc:URACIL-5-CARBOXYLATE-DECARBOXYLASE-RXN|RHEA:17685 molecular_function owl:Class GO:0032764 biolink:NamedThing negative regulation of mast cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell cytokine production. tmpzr1t_l9r_go_relaxed.owl down regulation of mast cell cytokine production|downregulation of mast cell cytokine production|inhibition of mast cell cytokine production|down-regulation of mast cell cytokine production biological_process owl:Class GO:0106279 biolink:NamedThing negative regulation of UDP-N-acetylglucosamine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of the UDP-N-acetylglucosamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of UDP-N-acetylglucosamine formation|negative regulation of UDP-N-acetylglucosamine synthesis|negative regulation of UDP-GlcNAc biosynthesis|negative regulation of UDP-N-acetylglucosamine biosynthesis|negative regulation of UDP-N-acetylglucosamine anabolism|negative regulation of UDP-GlcNAc biosynthetic process hjd 2020-07-09T17:26:06Z biological_process owl:Class GO:0010563 biolink:NamedThing negative regulation of phosphorus metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047709 biolink:NamedThing bis(2-ethylhexyl)phthalate esterase activity Catalysis of the reaction: bis(2-ethylhexyl)phthalate + H(2)O = 2-ethylhexan-1-ol + 2-ethylhexyl phthalate + H(+). tmpzr1t_l9r_go_relaxed.owl bis(2-ethylhexyl)phthalate acylhydrolase activity|DEHP esterase activity KEGG_REACTION:R04202|RHEA:15529|MetaCyc:BIS2-ETHYLHEXYLPHTHALATE-ESTERASE-RXN|EC:3.1.1.60 molecular_function owl:Class GO:0052689 biolink:NamedThing carboxylic ester hydrolase activity Catalysis of the hydrolysis of a carboxylic ester bond. tmpzr1t_l9r_go_relaxed.owl esterase A|serine esterase activity|ali-esterase activity|carboxylic acid esterase activity|procaine esterase activity|carboxylic esterase activity|carboxyesterase activity|carboxyl ester hydrolase activity|B-esterase activity|vitamin A esterase|cocaine esterase activity|nonspecific carboxylesterase activity|carboxylesterase activity|carboxylate esterase activity|esterase B|triacetin esterase|alpha-carboxylesterase activity Reactome:R-HSA-5693691|EC:3.1.1.1|Reactome:R-HSA-8937442|MetaCyc:CARBOXYLESTERASE-RXN|KEGG_REACTION:R00630|RHEA:21164|Reactome:R-HSA-9619024|UM-BBD_reactionID:r1025 GO:0016789|GO:0004302|GO:0004759|GO:0004091 molecular_function owl:Class GO:0070570 biolink:NamedThing regulation of neuron projection regeneration Any process that modulates the rate, frequency or extent of neuron projection regeneration, the regrowth of neuronal processes such as axons or dendrites following their loss or damage. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-15T01:23:48Z biological_process owl:Class GO:0010975 biolink:NamedThing regulation of neuron projection development Any process that modulates the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites). tmpzr1t_l9r_go_relaxed.owl regulation of neurite formation|regulation of neurite biosynthesis|regulation of neurite growth|regulation of neurite development tb 2009-06-01T10:44:45Z biological_process owl:Class GO:0043487 biolink:NamedThing regulation of RNA stability Any process that modulates the propensity of RNA molecules to degradation. Includes processes that both stabilize and destabilize RNAs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061616 biolink:NamedThing glycolytic process from fructose through fructose-6-phosphate The glycolytic process through fructose-6-phosphate in which fructose is catabolized into pyruvate. tmpzr1t_l9r_go_relaxed.owl glycolysis from fructose through fructose-6-phosphate MetaCyc:PWY-5484 dph 2014-04-08T10:20:37Z biological_process owl:Class GO:0006001 biolink:NamedThing fructose catabolic process The chemical reactions and pathways resulting in the breakdown of fructose, the ketohexose arabino-2-hexulose. tmpzr1t_l9r_go_relaxed.owl fructose breakdown|fructose catabolism|fructose degradation biological_process owl:Class GO:1901544 biolink:NamedThing positive regulation of ent-pimara-8(14),15-diene biosynthetic process Any process that activates or increases the frequency, rate or extent of ent-pimara-8(14),15-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of ent-pimara-8(14),15-diene formation|positive regulation of ent-pimara-8(14),15-diene formation|positive regulation of ent-pimara-8(14),15-diene synthesis|upregulation of ent-pimara-8(14),15-diene biosynthetic process|up regulation of ent-pimara-8(14),15-diene anabolism|up-regulation of ent-pimara-8(14),15-diene formation|up regulation of ent-pimara-8(14),15-diene formation|activation of ent-pimara-8(14),15-diene biosynthesis|upregulation of ent-pimara-8(14),15-diene biosynthesis|upregulation of ent-pimara-8(14),15-diene anabolism|up-regulation of ent-pimara-8(14),15-diene anabolism|positive regulation of ent-pimara-8(14),15-diene biosynthesis|up regulation of ent-pimara-8(14),15-diene biosynthetic process|activation of ent-pimara-8(14),15-diene biosynthetic process|positive regulation of ent-pimara-8(14),15-diene anabolism|up-regulation of ent-pimara-8(14),15-diene biosynthetic process|activation of ent-pimara-8(14),15-diene formation|activation of ent-pimara-8(14),15-diene anabolism|activation of ent-pimara-8(14),15-diene synthesis|upregulation of ent-pimara-8(14),15-diene synthesis|up-regulation of ent-pimara-8(14),15-diene synthesis|up regulation of ent-pimara-8(14),15-diene synthesis|up-regulation of ent-pimara-8(14),15-diene biosynthesis|up regulation of ent-pimara-8(14),15-diene biosynthesis di 2012-10-26T11:38:07Z biological_process owl:Class GO:0045828 biolink:NamedThing positive regulation of isoprenoid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving isoprenoid. tmpzr1t_l9r_go_relaxed.owl up-regulation of isoprenoid metabolic process|stimulation of isoprenoid metabolic process|upregulation of isoprenoid metabolic process|positive regulation of isoprenoid metabolism|activation of isoprenoid metabolic process|up regulation of isoprenoid metabolic process biological_process owl:Class GO:1990532 biolink:NamedThing stress response to nickel ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by a nickel ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to nickel ion stress|response to nickel toxicity|stress response to nickel kmv 2014-11-07T18:35:31Z biological_process owl:Class GO:0097501 biolink:NamedThing stress response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by a metal ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to metal ion toxicity|response to metal toxicity|response to metal ion stress|response to excess metal ion pr 2013-08-15T10:37:45Z biological_process owl:Class GO:0002927 biolink:NamedThing archaeosine-tRNA biosynthetic process The chemical reactions and pathways involved in the biosynthesis of archaeosine, an archaea-specific modified base found at position 15 in the D-loop of certain archaeal tRNAs. tmpzr1t_l9r_go_relaxed.owl Archaeosine (7-formamidino-7-deazaguanosine) is a structural variant of the hypermodified nucleoside 7-deazaguanosine. The biosynthesis pathway starts with archaeosine tRNA-guanine transglycosylase (ArcTGT) which catalyzes the exchange of guanine at position 15 in the D-loop of archaeal tRNAs with a free 7-cyano-7-deazaguanine. hjd 2012-01-18T03:06:27Z biological_process owl:Class GO:0009058 biolink:NamedThing biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. tmpzr1t_l9r_go_relaxed.owl multicellular organismal biosynthetic process|anabolism|single-organism biosynthetic process|biosynthesis|formation|synthesis Wikipedia:Anabolism jl 2012-10-17T15:52:18Z GO:0044274|GO:0044711 biological_process owl:Class GO:2000780 biolink:NamedThing negative regulation of double-strand break repair Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-23T09:28:08Z biological_process owl:Class GO:2000779 biolink:NamedThing regulation of double-strand break repair Any process that modulates the frequency, rate or extent of double-strand break repair. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-23T09:28:02Z biological_process owl:Class GO:1903726 biolink:NamedThing negative regulation of phospholipid metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of phospholipid metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of phospholipid metabolism|downregulation of phospholipid metabolic process|downregulation of phospholipid metabolism|down-regulation of phospholipid metabolism|inhibition of phospholipid metabolism|down-regulation of phospholipid metabolic process|negative regulation of phospholipid metabolism|inhibition of phospholipid metabolic process|down regulation of phospholipid metabolic process sl 2014-12-09T20:49:35Z biological_process owl:Class GO:0045833 biolink:NamedThing negative regulation of lipid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving lipids. tmpzr1t_l9r_go_relaxed.owl downregulation of lipid metabolic process|negative regulation of lipid metabolism|down regulation of lipid metabolic process|inhibition of lipid metabolic process|down-regulation of lipid metabolic process biological_process owl:Class GO:0046340 biolink:NamedThing diacylglycerol catabolic process The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group. tmpzr1t_l9r_go_relaxed.owl diacylglycerol degradation|diacylglycerol breakdown|diacylglycerol catabolism|diglyceride catabolism biological_process owl:Class GO:0046339 biolink:NamedThing diacylglycerol metabolic process The chemical reactions and pathways involving diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group. tmpzr1t_l9r_go_relaxed.owl diacylglycerol metabolism|diglyceride metabolism biological_process owl:Class GO:0042849 biolink:NamedThing L-sorbose biosynthetic process The chemical reactions and pathways resulting in the formation of L-sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. L-sorbose is formed by bacterial oxidation of sorbitol. tmpzr1t_l9r_go_relaxed.owl L-sorbose formation|L-sorbose anabolism|L-sorbose synthesis|L-sorbose biosynthesis biological_process owl:Class GO:0042847 biolink:NamedThing sorbose biosynthetic process The chemical reactions and pathways resulting in the formation of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid. tmpzr1t_l9r_go_relaxed.owl sorbose formation|sorbose biosynthesis|sorbose anabolism|sorbose synthesis biological_process owl:Class GO:1904023 biolink:NamedThing regulation of glucose catabolic process to lactate via pyruvate Any process that modulates the frequency, rate or extent of glucose catabolic process to lactate via pyruvate. tmpzr1t_l9r_go_relaxed.owl regulation of homofermentative lactate fermentation|regulation of homolactate fermentation|regulation of homofermentative pathway|regulation of homolactic fermentation|regulation of glucose fermentation to lactate via pyruvate|regulation of homofermentation dph 2015-03-11T16:57:32Z biological_process owl:Class GO:1903578 biolink:NamedThing regulation of ATP metabolic process Any process that modulates the frequency, rate or extent of ATP metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ATP metabolism sl 2014-10-30T19:04:24Z biological_process owl:Class GO:0090257 biolink:NamedThing regulation of muscle system process Any process that modulates the frequency, rate or extent of a muscle system process, a multicellular organismal process carried out by any of the organs or tissues in a muscle system. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-03T11:48:13Z biological_process owl:Class GO:1990861 biolink:NamedThing Ubp3-Bre5 deubiquitination complex A protein complex that cleaves ubiquitin from specific substrates. In the budding yeast Saccharomyces cerevisiae, this complex consists of Ubp3p and Bre5p. tmpzr1t_l9r_go_relaxed.owl Ubp3-Bre5 ubiquitin protease complex rb 2015-09-24T17:56:53Z cellular_component owl:Class GO:1903811 biolink:NamedThing L-asparagine import across plasma membrane The directed movement of L-asparagine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-asparagine import into cell|asparagine import tb 2012-09-24T14:28:58Z GO:0090469 biological_process owl:Class GO:0015807 biolink:NamedThing L-amino acid transport The directed movement of L-enantiomer amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043763 biolink:NamedThing UTP:glucose-1-phosphate uridylyltransferase regulator activity Binds to and modulates the activity of UTP:glucose-1-phosphate uridylyltransferase. tmpzr1t_l9r_go_relaxed.owl UDP-glucose pyrophosphorylase regulator activity|UDP-glucose diphosphorylase regulator activity|glucose-1-phosphate uridylyltransferase regulator activity molecular_function owl:Class GO:1905852 biolink:NamedThing positive regulation of backward locomotion Any process that activates or increases the frequency, rate or extent of backward locomotion. tmpzr1t_l9r_go_relaxed.owl up regulation of backward locomotion|up-regulation of backward locomotion|upregulation of backward locomotion|activation of backward locomotion rz 2017-01-23T11:04:25Z biological_process owl:Class GO:1900347 biolink:NamedThing positive regulation of methane biosynthetic process from methanethiol Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from methanethiol. tmpzr1t_l9r_go_relaxed.owl upregulation of methane biosynthetic process from methanethiol|up regulation of methane biosynthetic process from methanethiol|activation of methane biosynthetic process from methanethiol|up-regulation of methane biosynthetic process from methanethiol tt 2012-04-06T02:10:06Z biological_process owl:Class GO:1901579 biolink:NamedThing positive regulation of alkane biosynthetic process Any process that activates or increases the frequency, rate or extent of alkane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of alkane synthesis|up-regulation of alkane biosynthetic process|activation of alkane anabolism|up regulation of alkane biosynthesis|up regulation of alkane formation|up-regulation of alkane formation|positive regulation of alkane biosynthesis|up regulation of alkane anabolism|up-regulation of alkane biosynthesis|positive regulation of alkane synthesis|activation of alkane biosynthetic process|up-regulation of alkane synthesis|upregulation of alkane biosynthesis|upregulation of alkane formation|activation of alkane formation|up regulation of alkane synthesis|activation of alkane synthesis|up regulation of alkane biosynthetic process|activation of alkane biosynthesis|up-regulation of alkane anabolism|positive regulation of alkane formation|positive regulation of alkane anabolism|upregulation of alkane anabolism|upregulation of alkane biosynthetic process dhl 2012-11-05T21:54:19Z biological_process owl:Class GO:0032651 biolink:NamedThing regulation of interleukin-1 beta production Any process that modulates the frequency, rate, or extent of interleukin-1 beta production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-1 beta secretion|regulation of interleukin-1 beta biosynthetic process|regulation of IL-1 beta production GO:0050706|GO:0050722 biological_process owl:Class GO:0032652 biolink:NamedThing regulation of interleukin-1 production Any process that modulates the frequency, rate, or extent of interleukin-1 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-1 secretion|regulation of IL-1 production|regulation of interleukin-1 biosynthetic process GO:0050704|GO:0045360 biological_process owl:Class GO:2000731 biolink:NamedThing negative regulation of termination of RNA polymerase I transcription Any process that stops, prevents or reduces the frequency, rate or extent of termination of RNA polymerase I transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription termination from RNA polymerase I promoter|negative regulation of transcription termination from Pol I promoter|negative regulation of RNA polymerase I transcription termination dph 2011-06-10T08:43:44Z biological_process owl:Class GO:2000730 biolink:NamedThing regulation of termination of RNA polymerase I transcription Any process that modulates the frequency, rate or extent of termination of RNA polymerase I transcription. tmpzr1t_l9r_go_relaxed.owl regulation of transcription termination from RNA polymerase I promoter|regulation of transcription termination from Pol I promoter|regulation of RNA polymerase I transcription termination dph 2011-06-10T08:43:39Z biological_process owl:Class GO:0009952 biolink:NamedThing anterior/posterior pattern specification The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. tmpzr1t_l9r_go_relaxed.owl anterior/posterior pattern formation biological_process owl:Class GO:0003002 biolink:NamedThing regionalization The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. tmpzr1t_l9r_go_relaxed.owl pattern formation biological_process owl:Class GO:1903804 biolink:NamedThing glycine import across plasma membrane The directed movement of glycine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl glycine import|glycine import into cell bf 2012-05-11T01:16:45Z GO:0036233 biological_process owl:Class GO:0098656 biolink:NamedThing anion transmembrane transport The process in which an anion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl ATP hydrolysis coupled anion transmembrane transport GO:0099133 biological_process owl:Class GO:0042047 biolink:NamedThing W-molybdopterin cofactor biosynthetic process The chemical reactions and pathways resulting in the formation of the W-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear tungsten ion (W) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Moco biosynthesis|Moco biosynthetic process|W-molybdopterin cofactor formation|W-molybdopterin cofactor anabolism|W-molybdopterin cofactor synthesis|W-molybdopterin cofactor biosynthesis biological_process owl:Class GO:0008460 biolink:NamedThing dTDP-glucose 4,6-dehydratase activity Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O. tmpzr1t_l9r_go_relaxed.owl dTDP-glucose 4,6-hydro-lyase activity|thymidine diphosphoglucose oxidoreductase activity|dTDPglucose 4,6-dehydratase activity|dTDPglucose 4,6-hydro-lyase activity|dTDP-glucose 4,6-hydro-lyase (dTDP-4-dehydro-6-deoxy-D-glucose-forming)|TDP-glucose oxidoreductase activity MetaCyc:DTDPGLUCDEHYDRAT-RXN|KEGG_REACTION:R06513|EC:4.2.1.46|RHEA:17221 molecular_function owl:Class GO:0033672 biolink:NamedThing positive regulation of NAD+ kinase activity Any process that activates or increases the frequency, rate or extent of NAD kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to an NAD molecule. tmpzr1t_l9r_go_relaxed.owl NAD+ kinase activator|up-regulation of NAD+ kinase activity|upregulation of NAD+ kinase activity|stimulation of NAD+ kinase activity|up regulation of NAD+ kinase activity biological_process owl:Class GO:0021503 biolink:NamedThing neural fold bending The morphogenesis of the neural fold elevations that results in the movement of the tips of the elevations towards each other in order to fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070167 biolink:NamedThing regulation of biomineral tissue development Any process that modulates the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000026 biolink:NamedThing regulation of multicellular organismal development Any process that modulates the frequency, rate or extent of multicellular organismal development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:25:59Z biological_process owl:Class GO:1902107 biolink:NamedThing positive regulation of leukocyte differentiation Any process that activates or increases the frequency, rate or extent of leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of leukocyte differentiation|activation of immune cell differentiation|up regulation of leukocyte differentiation|positive regulation of immune cell differentiation|activation of leucocyte differentiation|positive regulation of leucocyte differentiation|upregulation of leucocyte differentiation|up-regulation of leucocyte differentiation|upregulation of immune cell differentiation|up regulation of immune cell differentiation|activation of leukocyte differentiation|up-regulation of immune cell differentiation|up regulation of leucocyte differentiation|up-regulation of leukocyte differentiation pr 2013-05-02T17:32:52Z biological_process owl:Class GO:1902105 biolink:NamedThing regulation of leukocyte differentiation Any process that modulates the frequency, rate or extent of leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of leucocyte differentiation|regulation of immune cell differentiation pr 2013-05-02T17:32:42Z biological_process owl:Class GO:0034651 biolink:NamedThing cortisol biosynthetic process The chemical reactions and pathways resulting in the formation of cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties. tmpzr1t_l9r_go_relaxed.owl cortisol anabolism|cortisol formation|cortisol biosynthesis|cortisol synthesis biological_process owl:Class GO:1902645 biolink:NamedThing tertiary alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of tertiary alcohol. tmpzr1t_l9r_go_relaxed.owl tertiary alcohol biosynthesis|tertiary alcohol formation|tertiary alcohol synthesis|tertiary alcohol anabolism tt 2014-01-21T17:54:02Z biological_process owl:Class GO:0032413 biolink:NamedThing negative regulation of ion transmembrane transporter activity Any process that stops or reduces the activity of an ion transporter. tmpzr1t_l9r_go_relaxed.owl inhibition of ion transporter activity|down regulation of ion transporter activity|down-regulation of ion transporter activity|downregulation of ion transporter activity|negative regulation of ion transporter activity biological_process owl:Class GO:0034766 biolink:NamedThing negative regulation of ion transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl down regulation of transmembrane ion transport|downregulation of transmembrane ion transport|negative regulation of ion membrane transport|down-regulation of transmembrane ion transport|inhibition of transmembrane ion transport|negative regulation of transmembrane ion transport biological_process owl:Class GO:0097697 biolink:NamedThing tRNA 5-carboxymethoxyuridine methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosylmethionine to a 5-carboxymethoxy-modified uridine residue in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-07T10:36:46Z molecular_function owl:Class GO:0016300 biolink:NamedThing tRNA (uracil) methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a uracil residue in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl tRNA (uridine) methyltransferase activity Note that the methyl donor is usually S-adenosyl-L-methionine, but there is at least one exception (see GO:0030698). GO:0016431 molecular_function owl:Class GO:2000302 biolink:NamedThing positive regulation of synaptic vesicle exocytosis Any process that activates or increases the frequency, rate or extent of synaptic vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl dph 2011-01-03T08:21:14Z biological_process owl:Class GO:0001956 biolink:NamedThing positive regulation of neurotransmitter secretion Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl stimulation of neurotransmitter secretion|activation of neurotransmitter secretion|up regulation of neurotransmitter secretion|up-regulation of neurotransmitter secretion|upregulation of neurotransmitter secretion biological_process owl:Class GO:0071587 biolink:NamedThing CAAX-box protein modification The covalent alteration of one or more amino acid residues within the CAAX box region of CAAX box proteins. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T04:48:56Z biological_process owl:Class GO:0043687 biolink:NamedThing post-translational protein modification The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome. tmpzr1t_l9r_go_relaxed.owl posttranslational modification|post-translational modification|PTM|post-translational amino acid modification|posttranslational amino acid modification|posttranslational protein modification Wikipedia:Posttranslational_modification This term should only be used to annotate a protein modification process that occurs after the protein has been released from the ribosome, and is therefore strictly post-translational. Modification of a free protein (one not attached to a ribosome) and modification of a C-terminal residue are post-translational processes. Some protein modifications occur while the protein is still in the ribosome but before translation has been completed; these modification processes are considered co-translational and should not be annotated using this term. biological_process owl:Class GO:0045572 biolink:NamedThing positive regulation of imaginal disc growth Any process that activates or increases the frequency, rate or extent of imaginal disc growth. tmpzr1t_l9r_go_relaxed.owl up regulation of imaginal disc growth|upregulation of imaginal disc growth|stimulation of imaginal disc growth|activation of imaginal disc growth|up-regulation of imaginal disc growth biological_process owl:Class GO:0045570 biolink:NamedThing regulation of imaginal disc growth Any process that modulates the frequency, rate or extent of the growth of the imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015189 biolink:NamedThing L-lysine transmembrane transporter activity Enables the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine/arginine/lysine/ornithine porter activity|lysine permease activity|L-lysine permease GO:0005293 molecular_function owl:Class GO:0008324 biolink:NamedThing cation transmembrane transporter activity Enables the transfer of cation from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl transmembrane cation transporter activity molecular_function owl:Class GO:0090063 biolink:NamedThing positive regulation of microtubule nucleation Any process that increases the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-12T11:33:09Z biological_process owl:Class GO:0010968 biolink:NamedThing regulation of microtubule nucleation Any process that modulates the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-20T11:51:21Z biological_process owl:Class GO:1905850 biolink:NamedThing positive regulation of forward locomotion Any process that activates or increases the frequency, rate or extent of forward locomotion. tmpzr1t_l9r_go_relaxed.owl activation of forward locomotion|upregulation of forward locomotion|up-regulation of forward locomotion|up regulation of forward locomotion rz 2017-01-23T11:04:05Z biological_process owl:Class GO:0040017 biolink:NamedThing positive regulation of locomotion Any process that activates or increases the frequency, rate or extent of locomotion of a cell or organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of locomotion|activation of locomotion|upregulation of locomotion|up regulation of locomotion|stimulation of locomotion biological_process owl:Class GO:0090344 biolink:NamedThing negative regulation of cell aging Any process that decreases the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:12:37Z biological_process owl:Class GO:0090342 biolink:NamedThing regulation of cell aging Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:12:37Z biological_process owl:Class GO:0030995 biolink:NamedThing cell septum edging catabolic process The chemical reactions and pathways resulting in the dissolution of the septum edging during cell separation. tmpzr1t_l9r_go_relaxed.owl cell septum edging hydrolysis|septum edging hydrolysis|hydrolysis of cell septum edging|hydrolysis of edging of cell septum biological_process owl:Class GO:0071999 biolink:NamedThing extracellular polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of polysaccharides used in extracellular structures. tmpzr1t_l9r_go_relaxed.owl extracellular polysaccharide breakdown|extracellular polysaccharide catabolism|extracellular polysaccharide degradation mah 2010-10-25T05:11:25Z biological_process owl:Class GO:1901631 biolink:NamedThing positive regulation of presynaptic membrane organization Any process that activates or increases the frequency, rate or extent of presynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl positive regulation of presynaptic membrane organisation|up regulation of presynaptic membrane organisation|positive regulation of pre-synaptic membrane organization|upregulation of presynaptic membrane organisation|up-regulation of presynaptic membrane organization|upregulation of presynaptic membrane organization|up regulation of presynaptic membrane organization|activation of presynaptic membrane organisation|up-regulation of presynaptic membrane organisation|activation of presynaptic membrane organization ans 2012-11-15T11:40:40Z biological_process owl:Class GO:2000766 biolink:NamedThing negative regulation of cytoplasmic translation Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translation. tmpzr1t_l9r_go_relaxed.owl vw 2011-06-20T10:39:23Z biological_process owl:Class GO:0016936 biolink:NamedThing galactoside binding Binding to a glycoside in which the sugar group is galactose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043847 biolink:NamedThing DNA polymerase III, clamp loader chi/psi subcomplex A dimer composed of the chi and psi subunits which is a subassembly of the DNA polymerase III clamp loader complex and serves as a bridge between the DnaX complex and the single-stranded DNA-binding protein (SSB). tmpzr1t_l9r_go_relaxed.owl DNA polymerase III, DnaX complex, chi/psi subcomplex cellular_component owl:Class GO:0050190 biolink:NamedThing phosphoglucokinase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + ATP = alpha-D-glucose 1,6-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:D-glucose-1-phosphate 6-phosphotransferase activity|phosphoglucokinase (phosphorylating)|glucose-phosphate kinase activity|ATP:alpha-D-glucose-1-phosphate 6-phosphotransferase activity RHEA:13377|MetaCyc:PHOSPHOGLUCOKINASE-RXN|EC:2.7.1.10|KEGG_REACTION:R00949 molecular_function owl:Class GO:0090194 biolink:NamedThing negative regulation of glomerulus development Any process that decreases the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:17:13Z biological_process owl:Class GO:0090192 biolink:NamedThing regulation of glomerulus development Any process that modulates the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:17:13Z biological_process owl:Class GO:0008108 biolink:NamedThing UDP-glucose:hexose-1-phosphate uridylyltransferase activity Catalysis of the reaction: alpha-D-galactose 1-phosphate + UDP-D-glucose = alpha-D-glucose 1-phosphate + UDP-D-galactose. tmpzr1t_l9r_go_relaxed.owl UDP-glucose-hexose-1-phosphate uridylyltransferase activity|Gal-1-P uridylyltransferase activity|UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase activity|uridyltransferase activity|UDPglucose:alpha-D-galactose-1-phosphate uridylyltransferase activity|uridylyl removing enzyme activity|UDPglucose-hexose-1-phosphate uridylyltransferase activity|galactose-1-phosphate uridylyltransferase activity|hexose 1-phosphate uridyltransferase activity|hexose-1-phosphate uridylyltransferase activity|uridyl transferase activity Reactome:R-HSA-70361|MetaCyc:GALACTURIDYLYLTRANS-RXN|EC:2.7.7.12|KEGG_REACTION:R00955|RHEA:13989|Reactome:R-HSA-5610038 molecular_function owl:Class GO:0070569 biolink:NamedThing uridylyltransferase activity Catalysis of the transfer of an uridylyl group to an acceptor. tmpzr1t_l9r_go_relaxed.owl uridyltransferase activity|uridyl transferase activity mah 2009-04-15T11:06:07Z molecular_function owl:Class GO:0034116 biolink:NamedThing positive regulation of heterotypic cell-cell adhesion Any process that activates or increases the frequency, rate, or extent of heterotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034114 biolink:NamedThing regulation of heterotypic cell-cell adhesion Any process that modulates the frequency, rate, or extent of heterotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009441 biolink:NamedThing glycolate metabolic process The chemical reactions and pathways involving glycolate, the anion of hydroxyethanoic acid (glycolic acid). tmpzr1t_l9r_go_relaxed.owl glycolate metabolism MetaCyc:GLYCOLATEMET-PWY biological_process owl:Class GO:0034308 biolink:NamedThing primary alcohol metabolic process The chemical reactions and pathways involving primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it. tmpzr1t_l9r_go_relaxed.owl primary alcohol metabolism|monohydric alcohol metabolic process biological_process owl:Class GO:0031431 biolink:NamedThing Dbf4-dependent protein kinase complex A heterodimeric protein complex required for the activation of DNA replication origins; comprises a catalytic subunit and a regulatory subunit (in Saccharomyces, Cdc7p and Dbf4p, respectively); complexes identified in other species generally contain proteins related to the Saccharomyces proteins. tmpzr1t_l9r_go_relaxed.owl Cdc7-Dbf4 complex|Hsk1-Dfp1 kinase complex|DDK cellular_component owl:Class GO:0140535 biolink:NamedThing intracellular protein-containing complex A protein-containing complex located intracellularly. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19952 pg 2020-10-28T14:40:16Z cellular_component owl:Class GO:0060876 biolink:NamedThing semicircular canal formation The developmental process pertaining to the initial formation of the semicircular canal from the otic vesicle. This process begins with the regionalization of the vesicle that specifies the area where the vesicles will form and continues through the process of fusion which forms the initial tubes. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:45:07Z biological_process owl:Class GO:0035148 biolink:NamedThing tube formation Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow. tmpzr1t_l9r_go_relaxed.owl lumen formation in an anatomical structure|tube lumen formation biological_process owl:Class GO:0071222 biolink:NamedThing cellular response to lipopolysaccharide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl cellular response to endotoxin|cellular response to LPS mah 2009-12-03T01:29:29Z biological_process owl:Class GO:0050774 biolink:NamedThing negative regulation of dendrite morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of dendrite morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of dendrite morphogenesis|downregulation of dendrite morphogenesis|down regulation of dendrite morphogenesis|down-regulation of dendrite morphogenesis biological_process owl:Class GO:0048814 biolink:NamedThing regulation of dendrite morphogenesis Any process that modulates the frequency, rate or extent of dendrite morphogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032827 biolink:NamedThing negative regulation of natural killer cell differentiation involved in immune response Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of natural killer cell differentiation during immune response|negative regulation of NK cell differentiation during immune response|downregulation of natural killer cell differentiation during immune response|down-regulation of natural killer cell differentiation during immune response|inhibition of natural killer cell differentiation during immune response|down regulation of natural killer cell differentiation during immune response|negative regulation of natural killer cell development involved in immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0032826 biolink:NamedThing regulation of natural killer cell differentiation involved in immune response Any process that modulates the frequency, rate or extent of natural killer cell differentiation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl regulation of natural killer cell differentiation during immune response|regulation of natural killer cell development involved in immune response|regulation of NK cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050203 biolink:NamedThing oxalate-CoA ligase activity Catalysis of the reaction: ATP + CoA + oxalate = AMP + diphosphate + H(+) + oxalyl-CoA. tmpzr1t_l9r_go_relaxed.owl oxalate:CoA ligase (AMP-forming)|oxalyl coenzyme A synthetase activity|oxalyl-CoA synthetase activity MetaCyc:OXALATE--COA-LIGASE-RXN|EC:6.2.1.8|RHEA:18293|KEGG_REACTION:R01558 molecular_function owl:Class GO:0016878 biolink:NamedThing acid-thiol ligase activity Catalysis of the joining of an acid and a thiol via a carbon-sulfur bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.2.1.- molecular_function owl:Class GO:0051573 biolink:NamedThing negative regulation of histone H3-K9 methylation Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3-K9 methylation|downregulation of histone H3-K9 methylation|down regulation of histone H3-K9 methylation|inhibition of histone H3-K9 methylation biological_process owl:Class GO:1903296 biolink:NamedThing positive regulation of glutamate secretion, neurotransmission Any process that activates or increases the frequency, rate or extent of glutamate secretion, where glutamate acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl activation of glutamate secretion, neurotransmission|up-regulation of glutamate secretion, neurotransmission|up regulation of glutamate secretion, neurotransmission|upregulation of glutamate secretion, neurotransmission An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 inferred from mutant phenotype pad 2014-08-13T13:54:31Z biological_process owl:Class GO:1901435 biolink:NamedThing negative regulation of toluene catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of toluene catabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of toluene catabolism|negative regulation of toluene breakdown|inhibition of toluene breakdown|negative regulation of toluene degradation|downregulation of toluene breakdown|negative regulation of toluene catabolism|down-regulation of toluene catabolism|down regulation of toluene catabolism|inhibition of toluene degradation|downregulation of toluene degradation|down-regulation of toluene catabolic process|down-regulation of toluene breakdown|down-regulation of toluene degradation|downregulation of toluene catabolism|inhibition of toluene catabolic process|down regulation of toluene degradation|downregulation of toluene catabolic process|down regulation of toluene catabolic process|down regulation of toluene breakdown tt 2012-10-01T21:13:41Z biological_process owl:Class GO:0003186 biolink:NamedThing tricuspid valve morphogenesis The process in which the structure of the tricuspid valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T12:05:45Z biological_process owl:Class GO:0003181 biolink:NamedThing atrioventricular valve morphogenesis The process in which the structure of the atrioventricular valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl AV valve morphogenesis dph 2009-10-08T11:31:59Z biological_process owl:Class GO:0060893 biolink:NamedThing limb granular cell fate specification The process in which a cell becomes capable of differentiating autonomously into an limb granular cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:44:14Z biological_process owl:Class GO:0060573 biolink:NamedThing cell fate specification involved in pattern specification The process involved in the specification of the identity of a cell in a field of cells that is being instructed as to how to differentiate. Once specification has taken place, that cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-05T02:19:14Z biological_process owl:Class GO:0004947 biolink:NamedThing bradykinin receptor activity Combining with bradykinin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2001145 biolink:NamedThing negative regulation of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-19T10:41:28Z biological_process owl:Class GO:2001144 biolink:NamedThing regulation of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Any process that modulates the frequency, rate or extent of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-19T10:41:25Z biological_process owl:Class GO:2001256 biolink:NamedThing regulation of store-operated calcium entry Any process that modulates the frequency, rate or extent of store-operated calcium entry. tmpzr1t_l9r_go_relaxed.owl regulation of SOCE|regulation of store-operated calcium import|regulation of capacitative calcium entry|regulation of calcium ion import vk 2011-12-07T07:08:38Z biological_process owl:Class GO:0051924 biolink:NamedThing regulation of calcium ion transport Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of calcium transport biological_process owl:Class GO:0015438 biolink:NamedThing ABC-type teichoic acid transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + teichoic acid(in) = ADP + phosphate + teichoic acid(out). tmpzr1t_l9r_go_relaxed.owl ATP-dependent teichoic acid transmembrane transporter activity|teichoic acid transmembrane transporter activity|ABC-type teichoic-acid transporter|ATPase-coupled teichoic acid transmembrane transporter activity|teichoic-acid-transporting ATPase activity|teichoic-acid ABC transporter MetaCyc:3.6.3.40-RXN|EC:7.5.2.4 GO:0015162 molecular_function owl:Class GO:0022884 biolink:NamedThing macromolecule transmembrane transporter activity Enables the transfer of a macromolecule from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900490 biolink:NamedThing positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. tmpzr1t_l9r_go_relaxed.owl upregulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|up regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|up-regulation of HMG-CoA reductase activity|up regulation of HMG-CoA reductase activity|upregulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity|up regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity|positive regulation of HMG-CoA reductase activity|up-regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity|activation of hydroxymethylglutaryl-CoA reductase (NADPH) activity|up-regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|upregulation of HMG-CoA reductase activity|positive regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|activation of HMG-CoA reductase activity|activation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity al 2012-05-02T03:01:43Z biological_process owl:Class GO:0051353 biolink:NamedThing positive regulation of oxidoreductase activity Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. tmpzr1t_l9r_go_relaxed.owl up regulation of oxidoreductase activity|activation of oxidoreductase activity|stimulation of oxidoreductase activity|oxidoreductase activator|up-regulation of oxidoreductase activity|upregulation of oxidoreductase activity|ribonucleotide reductase activating enzyme activity GO:0009391 biological_process owl:Class GO:1902953 biolink:NamedThing positive regulation of ER to Golgi vesicle-mediated transport Any process that activates or increases the frequency, rate or extent of ER to Golgi vesicle-mediated transport. tmpzr1t_l9r_go_relaxed.owl up regulation of ER to Golgi vesicle-mediated transport|upregulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|positive regulation of rough endoplasmic reticulum to cis-Golgi transport|upregulation of rough endoplasmic reticulum to cis-Golgi transport|positive regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|up regulation of endoplasmic reticulum to Golgi transport|up regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|up-regulation of rough endoplasmic reticulum to cis-Golgi transport|activation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|activation of rough ER to cis-Golgi vesicle-mediated transport|up-regulation of ER to Golgi vesicle-mediated transport|up-regulation of rough ER to cis-Golgi transport|up regulation of rough ER to cis-Golgi vesicle-mediated transport|positive regulation of rough ER to cis-Golgi transport|activation of rough endoplasmic reticulum to cis-Golgi transport|upregulation of ER to Golgi vesicle-mediated transport|up regulation of rough endoplasmic reticulum to cis-Golgi transport|up regulation of endoplasmic reticulum to Golgi vesicle-mediated transport|upregulation of endoplasmic reticulum to Golgi transport|positive regulation of rough ER to cis-Golgi vesicle-mediated transport|positive regulation of endoplasmic reticulum to Golgi transport|upregulation of rough ER to cis-Golgi vesicle-mediated transport|upregulation of rough ER to cis-Golgi transport|positive regulation of ER to Golgi transport|up regulation of ER to Golgi transport|upregulation of ER to Golgi transport|upregulation of endoplasmic reticulum to Golgi vesicle-mediated transport|up-regulation of endoplasmic reticulum to Golgi transport|up-regulation of ER to Golgi transport|up-regulation of endoplasmic reticulum to Golgi vesicle-mediated transport|activation of rough ER to cis-Golgi transport|activation of endoplasmic reticulum to Golgi transport|up-regulation of rough ER to cis-Golgi vesicle-mediated transport|activation of ER to Golgi vesicle-mediated transport|activation of ER to Golgi transport|up-regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|up regulation of rough ER to cis-Golgi transport|positive regulation of endoplasmic reticulum to Golgi vesicle-mediated transport|activation of endoplasmic reticulum to Golgi vesicle-mediated transport sjp 2014-05-02T08:59:18Z biological_process owl:Class GO:0032388 biolink:NamedThing positive regulation of intracellular transport Any process that activates or increases the frequency, rate or extent of the directed movement of substances within cells. tmpzr1t_l9r_go_relaxed.owl up regulation of intracellular transport|up-regulation of intracellular transport|upregulation of intracellular transport|activation of intracellular transport|stimulation of intracellular transport biological_process owl:Class GO:0031452 biolink:NamedThing negative regulation of heterochromatin assembly Any process that stops, prevents, or reduces the frequency, rate or extent of heterochromatin formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of heterochromatin formation|inhibition of heterochromatin formation|downregulation of heterochromatin formation|down regulation of heterochromatin formation|down-regulation of heterochromatin formation biological_process owl:Class GO:0120262 biolink:NamedThing negative regulation of heterochromatin organization Any process that stops, prevents, or reduces the frequency, rate or extent of heterochromatin organization. tmpzr1t_l9r_go_relaxed.owl downregulation of heterochromatin organization|inhibition of heterochromatin organization|down regulation of heterochromatin organization|down-regulation of heterochromatin organization https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:12:30Z biological_process owl:Class GO:0031409 biolink:NamedThing pigment binding Binding to a pigment, a general or particular coloring matter in living organisms, e.g. melanin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005488 biolink:NamedThing binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. tmpzr1t_l9r_go_relaxed.owl ligand Wikipedia:Binding_(molecular) Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. molecular_function owl:Class GO:0031396 biolink:NamedThing regulation of protein ubiquitination Any process that modulates the frequency, rate or extent of the addition of ubiquitin groups to a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045823 biolink:NamedThing positive regulation of heart contraction Any process that activates or increases the frequency, rate or extent of heart contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of heart contraction|activation of heart contraction|positive regulation of cardiac contraction|stimulation of heart contraction|up regulation of heart contraction|upregulation of heart contraction biological_process owl:Class GO:1903524 biolink:NamedThing positive regulation of blood circulation Any process that activates or increases the frequency, rate or extent of blood circulation. tmpzr1t_l9r_go_relaxed.owl positive regulation of hemolymph circulation|upregulation of hemolymph circulation|activation of blood circulation|up-regulation of hemolymph circulation|upregulation of blood circulation|up regulation of hemolymph circulation|activation of hemolymph circulation|up regulation of blood circulation|up-regulation of blood circulation mr 2014-10-06T18:39:13Z biological_process owl:Class GO:0033631 biolink:NamedThing cell-cell adhesion mediated by integrin The attachment of one cell to another cell via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion mediated by integrin complex biological_process owl:Class GO:0033627 biolink:NamedThing cell adhesion mediated by integrin The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits. tmpzr1t_l9r_go_relaxed.owl cell adhesion mediated by integrin complex biological_process owl:Class GO:0090441 biolink:NamedThing trehalose biosynthesis in response to heat stress The chemical reactions and pathways resulting in the formation of trehalose that occur as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl trehalose biosynthetic process in response to heat stress tb 2012-08-23T13:53:07Z biological_process owl:Class GO:0070414 biolink:NamedThing trehalose metabolism in response to heat stress The chemical reactions and pathways involving trehalose that occur as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl trehalose metabolic process involved in response to heat stress biological_process owl:Class GO:0080173 biolink:NamedThing male-female gamete recognition during double fertilization forming a zygote and endosperm The initial contact step made between the male gamete and the female gamete during double fertilization forming a zygote and endosperm. An example can be found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl male-female gamete recognition|gamete recognition dhl 2011-04-26T04:58:58Z biological_process owl:Class GO:0009988 biolink:NamedThing cell-cell recognition Cell recognition between cells. May involve the formation of specialized cell junctions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019617 biolink:NamedThing protocatechuate catabolic process, meta-cleavage The chemical reactions and pathways resulting in the breakdown of protocatechuate, the anion of 3,4-dihydroxybenzoic acid, to yield oxaloacetate and pyruvate. tmpzr1t_l9r_go_relaxed.owl protocatechuate degradation, meta-cleavage|protocatechuate catabolic process to oxaloacetate and pyruvate|protocatechuate breakdown, meta-cleavage|3,4-dihydroxybenzoate catabolic process, meta-cleavage MetaCyc:P184-PWY biological_process owl:Class GO:0006107 biolink:NamedThing oxaloacetate metabolic process The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle. tmpzr1t_l9r_go_relaxed.owl oxaloacetate metabolism biological_process owl:Class GO:0070457 biolink:NamedThing D-galactose-1-phosphate phosphatase activity Catalysis of the reaction: D-galactose-1-phosphate + H2O = D-galactose + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070456 biolink:NamedThing galactose-1-phosphate phosphatase activity Catalysis of the reaction: galactose-1-phosphate + H2O = galactose + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004945 biolink:NamedThing angiotensin type II receptor activity An angiotensin receptor activity that acts via Gi protein coupling and cGMP (NO) generation, and may also act via additional signaling mechanisms. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001595 biolink:NamedThing angiotensin receptor activity Combining with angiotensin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050795 biolink:NamedThing regulation of behavior Any process that modulates the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli. tmpzr1t_l9r_go_relaxed.owl regulation of behaviour biological_process owl:Class GO:0050967 biolink:NamedThing detection of electrical stimulus involved in sensory perception of pain The series of events that contribute to the perception of pain in which an electrical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of pain, detection of electrical stimulus|perception of pain, sensory transduction of electrical stimulus|perception of pain, sensory detection of electrical stimulus|detection of electrical stimulus during sensory perception of pain|sensory detection of electrical stimulus during perception of pain|sensory transduction of electrical stimulus during perception of pain biological_process owl:Class GO:0050981 biolink:NamedThing detection of electrical stimulus The series of events by which an electrical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060770 biolink:NamedThing negative regulation of epithelial cell proliferation involved in prostate gland development Any process that decreases the rate, frequency or extent of epithelial cell proliferation that contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-08T07:40:27Z biological_process owl:Class GO:0050680 biolink:NamedThing negative regulation of epithelial cell proliferation Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of epithelial cell proliferation|down regulation of epithelial cell proliferation|down-regulation of epithelial cell proliferation|inhibition of epithelial cell proliferation biological_process owl:Class GO:0103023 biolink:NamedThing ITPase activity Catalysis of the reaction: ITP + H2O <=> H+ + IDP + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28330|EC:3.6.1.73|MetaCyc:RXN0-5073 molecular_function owl:Class GO:0016818 biolink:NamedThing hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.- molecular_function owl:Class GO:2000562 biolink:NamedThing negative regulation of CD4-positive, alpha-beta T cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:01:11Z biological_process owl:Class GO:2000515 biolink:NamedThing negative regulation of CD4-positive, alpha-beta T cell activation Any process that stops, prevents or reduces the frequency, rate or extent of CD4-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:37:02Z biological_process owl:Class GO:0006110 biolink:NamedThing regulation of glycolytic process Any process that modulates the frequency, rate or extent of glycolysis. tmpzr1t_l9r_go_relaxed.owl regulation of glycolysis involved in cellular glucose homeostasis GO:0090525 biological_process owl:Class GO:0042325 biolink:NamedThing regulation of phosphorylation Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032069 biolink:NamedThing regulation of nuclease activity Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids. tmpzr1t_l9r_go_relaxed.owl nuclease regulator activity biological_process owl:Class GO:0071785 biolink:NamedThing endoplasmic reticulum cisternal network maintenance The organization process that preserves the endoplasmic reticulum (ER) cisternal network in a stable functional or structural state. The ER cisternal network is the ER part that comprises the membranes with low curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl ER cisternal network maintenance mah 2010-09-01T01:52:26Z biological_process owl:Class GO:0090177 biolink:NamedThing establishment of planar polarity involved in neural tube closure Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-14T10:38:46Z biological_process owl:Class GO:0001736 biolink:NamedThing establishment of planar polarity Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl establishment of planar cell polarity biological_process owl:Class GO:0039537 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm. This is a mechanism by which the virus evades the host innate immune response. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host RIG-I/MDA5 signaling pathway|suppression by virus of host RIG-I-like receptor (RLR) signaling pathway|suppression by virus of host cytoplasmic pattern recognition receptor signaling pathway in response to virus|suppression by virus of host RIG-like helicase signaling pathway|suppression by virus of host RIG-like receptor signaling pathway|suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signalling pathway|suppression by virus of host RLR signaling pathway bf 2012-01-03T11:47:05Z biological_process owl:Class GO:0039503 biolink:NamedThing suppression by virus of host innate immune response Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense. tmpzr1t_l9r_go_relaxed.owl inhibition of host innate immune response by virus|negative regulation by virus of host innate immune response|suppression by virus of host innate immunity|negative regulation by virus of host innate immunity bf 2011-05-11T04:31:17Z biological_process owl:Class GO:0001972 biolink:NamedThing retinoic acid binding Binding to retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035462 biolink:NamedThing determination of left/right asymmetry in diencephalon The establishment of the diencephalon with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-19T11:50:11Z biological_process owl:Class GO:0035545 biolink:NamedThing determination of left/right asymmetry in nervous system The establishment of the nervous system with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-11T01:53:33Z biological_process owl:Class GO:0033455 biolink:NamedThing GCA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GCA codon. tmpzr1t_l9r_go_relaxed.owl alanine tRNA Note that in the standard genetic code, GCA codes for alanine. molecular_function owl:Class GO:0030533 biolink:NamedThing triplet codon-amino acid adaptor activity The codon binding activity of a tRNA that positions an activated amino acid, mediating its insertion at the correct point in the sequence of a nascent polypeptide chain during protein synthesis. tmpzr1t_l9r_go_relaxed.owl transfer RNA|tRNA Note that this term can be used in place of the obsolete term 'transfer RNA ; GO:0005563'. molecular_function owl:Class GO:0034921 biolink:NamedThing cis-4,5-dihydroxy-4,5-dihydropyrene dehydrogenase activity Catalysis of the reaction: cis-4,5-dihydroxy-4,5-dihydropyrene = 4,5-dihydroxypyrene + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0935 molecular_function owl:Class GO:0050569 biolink:NamedThing glycolaldehyde dehydrogenase activity Catalysis of the reaction: glycolaldehyde + H(2)O + NAD(+) = glycolate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl glycol aldehyde dehydrogenase activity|glycolaldehyde:NAD+ oxidoreductase activity RHEA:20001|EC:1.2.1.21|MetaCyc:GLYCOLALD-DEHYDROG-RXN|KEGG_REACTION:R01333 molecular_function owl:Class GO:0004029 biolink:NamedThing aldehyde dehydrogenase (NAD+) activity Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl aldehyde dehydrogenase (NAD+)|NAD-dependent aldehyde dehydrogenase activity|NAD-dependent 4-hydroxynonenal dehydrogenase activity|m-methylbenzaldehyde dehydrogenase activity|aldehyde:NAD+ oxidoreductase activity|propionaldehyde dehydrogenase activity|CoA-independent aldehyde dehydrogenase activity|NAD-aldehyde dehydrogenase activity|NAD-linked aldehyde dehydrogenase activity Reactome:R-HSA-6808487|EC:1.2.1.3|UM-BBD_enzymeID:e0024|Reactome:R-HSA-6808496|RHEA:16185|Reactome:R-HSA-71691|Reactome:R-HSA-5692261|Reactome:R-HSA-380608|MetaCyc:ALDHDEHYDROG-RXN|Reactome:R-HSA-5696091|Wikipedia:Aldehyde_dehydrogenase_(NAD+)|Reactome:R-HSA-389609|Reactome:R-HSA-71723|Reactome:R-HSA-6813749 molecular_function owl:Class GO:1905150 biolink:NamedThing regulation of voltage-gated sodium channel activity Any process that modulates the frequency, rate or extent of voltage-gated sodium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of voltage gated sodium channel activity|regulation of voltage-sensitive sodium channel|regulation of voltage-gated sodium ion channel activity|regulation of voltage-dependent sodium channel activity sl 2016-04-15T21:47:40Z biological_process owl:Class GO:0001546 biolink:NamedThing preantral ovarian follicle growth Increase in size of follicles surrounded by two or more layers of granulosa cells up to the onset of antrum formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022602 biolink:NamedThing ovulation cycle process A process involved in the sexual cycle seen in females, often with physiologic changes in the endometrium that recur at regular intervals during the reproductive years. tmpzr1t_l9r_go_relaxed.owl estrous cycle process|menstrual cycle process biological_process owl:Class GO:0048791 biolink:NamedThing calcium ion-regulated exocytosis of neurotransmitter The release of a neurotransmitter into the synaptic cleft by exocytosis of synaptic vesicles, where the release step is dependent on a rise in cytosolic calcium ion levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017156 biolink:NamedThing calcium-ion regulated exocytosis The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, induced by a rise in cytosolic calcium-ion levels. tmpzr1t_l9r_go_relaxed.owl calcium ion-dependent exocytosis Note that the calcium regulated exocytosis pathway can be leaky: some level of exocytosis via this pathway occurs spontaneously. This phenomenon underlies spontaneous neurotransmitter release from presynapses. This phenomenon is distinct from the unregulated, calcium independent exocytosis pathway. biological_process owl:Class GO:0008289 biolink:NamedThing lipid binding Binding to a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047989 biolink:NamedThing hydroxybutyrate-dimer hydrolase activity Catalysis of the reaction: (R)-3-[(R)-3-hydroxybutanoyloxy]butanoate + H(2)O = 2 (R)-3-hydroxybutanoate + H(+). tmpzr1t_l9r_go_relaxed.owl D-(-)-3-hydroxybutyrate-dimer hydrolase activity|(R)-3-((R)-3-hydroxybutanoyloxy)butanoate hydroxybutanoylhydrolase activity MetaCyc:HYDROXYBUTYRATE-DIMER-HYDROLASE-RXN|KEGG_REACTION:R00048|RHEA:10172|EC:3.1.1.22 molecular_function owl:Class GO:0070875 biolink:NamedThing positive regulation of glycogen metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving glycogen. tmpzr1t_l9r_go_relaxed.owl positive regulation of glycogen metabolism mah 2009-08-20T02:53:55Z biological_process owl:Class GO:0010907 biolink:NamedThing positive regulation of glucose metabolic process Any process that increases the rate, frequency or extent of glucose metabolism. Glucose metabolic processes are the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucose metabolism biological_process owl:Class GO:1901831 biolink:NamedThing all-trans-neoxanthin metabolic process The chemical reactions and pathways involving all-trans-neoxanthin. tmpzr1t_l9r_go_relaxed.owl neoxanthin metabolism|neoxanthin metabolic process|all-trans-neoxanthin metabolism yaf 2013-01-22T12:43:46Z biological_process owl:Class GO:0016122 biolink:NamedThing xanthophyll metabolic process The chemical reactions and pathways involving xanthophylls, oxygen-containing carotenoids. tmpzr1t_l9r_go_relaxed.owl xanthophyll metabolism biological_process owl:Class GO:0046124 biolink:NamedThing purine deoxyribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside catabolism|purine deoxyribonucleoside breakdown|purine deoxyribonucleoside degradation biological_process owl:Class GO:0046122 biolink:NamedThing purine deoxyribonucleoside metabolic process The chemical reactions and pathways involving any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside metabolism biological_process owl:Class GO:1900100 biolink:NamedThing positive regulation of plasma cell differentiation Any process that activates or increases the frequency, rate or extent of plasma cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of plasma cell differentiation|up regulation of plasma cell development|upregulation of plasma cell development|up-regulation of plasma cell differentiation|activation of plasma cell development|positive regulation of plasma cell development|up regulation of plasma cell differentiation|up-regulation of plasma cell development|upregulation of plasma cell differentiation bf 2012-02-15T10:46:08Z biological_process owl:Class GO:1900098 biolink:NamedThing regulation of plasma cell differentiation Any process that modulates the frequency, rate or extent of plasma cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of plasma cell development bf 2012-02-15T10:46:00Z biological_process owl:Class GO:0019297 biolink:NamedThing coenzyme B metabolic process The chemical reactions and pathways involving coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes. tmpzr1t_l9r_go_relaxed.owl coenzyme B metabolism biological_process owl:Class GO:2000448 biolink:NamedThing positive regulation of macrophage migration inhibitory factor signaling pathway Any process that activates or increases the frequency, rate or extent of macrophage migration inhibitory factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of MIF signaling pathway|positive regulation of macrophage migration inhibitory factor signalling pathway bf 2011-03-04T10:38:43Z biological_process owl:Class GO:2000446 biolink:NamedThing regulation of macrophage migration inhibitory factor signaling pathway Any process that modulates the frequency, rate or extent of macrophage migration inhibitory factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of MIF signaling pathway|regulation of macrophage migration inhibitory factor signalling pathway bf 2011-03-04T10:37:39Z biological_process owl:Class GO:0061915 biolink:NamedThing actin fusion focus localization Any process in which an actin fusion focus are transported to, or maintained in, a specific location. The actin fusion focus is an aster-like, F-actin-containing structure at the mating projection tip where the cell wall is degraded during conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl actin fusion focus localisation dph 2017-07-10T18:11:47Z biological_process owl:Class GO:0051641 biolink:NamedThing cellular localization A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of cellular localization|single-organism cellular localization|intracellular localization|single organism cellular localization|localization within cell|establishment and maintenance of localization in cell or cell membrane|cellular localisation jl 2013-12-18T14:04:32Z GO:1902580 biological_process owl:Class GO:0008427 biolink:NamedThing calcium-dependent protein kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a calcium-dependent protein kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009965 biolink:NamedThing leaf morphogenesis The process in which the anatomical structures of the leaf are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905392 biolink:NamedThing plant organ morphogenesis The developmental process by which a plant organ is generated and organized. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T00:21:19Z biological_process owl:Class GO:0036062 biolink:NamedThing presynaptic periactive zone A region that surrounds the active zone of the presynaptic plasma membrane, and is specialized for the control of synaptic development. tmpzr1t_l9r_go_relaxed.owl pre-synaptic periactive zone|periactive zone bf 2011-12-14T02:25:29Z cellular_component owl:Class GO:0097060 biolink:NamedThing synaptic membrane A specialized area of membrane on either the presynaptic or the postsynaptic side of a synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-07T11:22:09Z cellular_component owl:Class GO:0003348 biolink:NamedThing cardiac endothelial cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T11:12:05Z biological_process owl:Class GO:0035051 biolink:NamedThing cardiocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual. tmpzr1t_l9r_go_relaxed.owl cardiac cell differentiation|heart cell differentiation biological_process owl:Class GO:0036174 biolink:NamedThing butane monooxygenase activity Catalysis of the reaction: butane + O2 + NAD(P)H + H+ = butanol + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl sBMO|soluble butane monooxygenase bf 2012-03-29T10:42:07Z molecular_function owl:Class GO:0016713 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced iron-sulfur protein and one other donor, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulphur protein as one donor, and incorporation of one atom of oxygen EC:1.14.15.- molecular_function owl:Class GO:0060045 biolink:NamedThing positive regulation of cardiac muscle cell proliferation Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart muscle cell proliferation biological_process owl:Class GO:0014060 biolink:NamedThing regulation of epinephrine secretion Any process that modulates the frequency, rate or extent of the regulated release of epinephrine. tmpzr1t_l9r_go_relaxed.owl regulation of adrenaline secretion biological_process owl:Class GO:0050433 biolink:NamedThing regulation of catecholamine secretion Any process that modulates the frequency, rate or extent of the regulated release of catecholamines. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034045 biolink:NamedThing phagophore assembly site membrane A cellular membrane associated with the phagophore assembly site. tmpzr1t_l9r_go_relaxed.owl isolation membrane|pre-autophagosomal structure membrane|PAS membrane|phagophore cellular_component owl:Class GO:0016020 biolink:NamedThing membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. tmpzr1t_l9r_go_relaxed.owl region of membrane|membrane region|whole membrane Wikipedia:Biological_membrane 2014-03-06T11:37:54Z GO:0098589|GO:0098805 cellular_component owl:Class GO:0045864 biolink:NamedThing positive regulation of pteridine metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving pteridine. tmpzr1t_l9r_go_relaxed.owl upregulation of pteridine metabolic process|up regulation of pteridine metabolic process|stimulation of pteridine metabolic process|activation of pteridine metabolic process|positive regulation of pteridine metabolism|up-regulation of pteridine metabolic process biological_process owl:Class GO:0090149 biolink:NamedThing mitochondrial membrane fission A process that is carried out at the cellular level which results in the separation of a single continuous mitochondrial membrane into two membranes and contributes to mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl mitochondrial membrane scission|membrane fission involved in mitochondrial fission tb 2009-12-08T03:08:57Z biological_process owl:Class GO:0090148 biolink:NamedThing membrane fission A process that is carried out at the cellular level which results in the separation of a single continuous membrane into two membranes. tmpzr1t_l9r_go_relaxed.owl membrane scission tb 2009-12-08T03:06:36Z biological_process owl:Class GO:1903293 biolink:NamedThing phosphatase complex A protein complex which is capable of phosphatase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PTEN in human (P60484) in PMID:24766807 (inferred from direct assay). bhm 2014-08-13T10:25:32Z cellular_component owl:Class GO:1902494 biolink:NamedThing catalytic complex A protein complex which is capable of catalytic activity. tmpzr1t_l9r_go_relaxed.owl enzyme complex bhm 2013-11-13T16:18:47Z cellular_component owl:Class GO:0100011 biolink:NamedThing positive regulation of fever generation by prostaglandin secretion Any prostaglandin secretion process that positively_regulates fever generation. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0032310 biolink:NamedThing prostaglandin secretion The regulated release of a prostaglandin, any of a group of biologically active metabolites which contain a cyclopentane ring, from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl prostacyclin secretion biological_process owl:Class GO:1900589 biolink:NamedThing violaceol I catabolic process The chemical reactions and pathways resulting in the breakdown of violaceol I. tmpzr1t_l9r_go_relaxed.owl violaceol I breakdown|violaceol I degradation|violaceol I catabolism di 2012-05-15T06:51:09Z biological_process owl:Class GO:0019614 biolink:NamedThing catechol-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of catechol-containing compounds. Catechol is a compound containing a pyrocatechol nucleus or substituent. tmpzr1t_l9r_go_relaxed.owl catechol catabolic process|catechol catabolism|catechol breakdown|catechol degradation biological_process owl:Class GO:1902965 biolink:NamedThing regulation of protein localization to early endosome Any process that modulates the frequency, rate or extent of protein localization to early endosome. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in early endosome|regulation of protein localisation in early endosome|regulation of protein localisation to early endosome sjp 2014-05-06T09:28:24Z biological_process owl:Class GO:0000117 biolink:NamedThing regulation of transcription involved in G2/M transition of mitotic cell cycle Any process that regulates transcription such that the target genes are transcribed as part of the G2/M transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl G2/M-specific transcription in mitotic cell cycle|regulation of transcription from RNA polymerase II promoter during G2/M transition of mitotic cell cycle biological_process owl:Class GO:0006355 biolink:NamedThing regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl regulation of transcription, DNA-dependent|regulation of cellular transcription, DNA-dependent|transcriptional control|regulation of gene-specific transcription GO:0032583|GO:0045449|GO:0061019 biological_process owl:Class GO:0045824 biolink:NamedThing negative regulation of innate immune response Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response. tmpzr1t_l9r_go_relaxed.owl down regulation of innate immune response|downregulation of innate immune response|down-regulation of innate immune response|inhibition of innate immune response biological_process owl:Class GO:0050777 biolink:NamedThing negative regulation of immune response Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. tmpzr1t_l9r_go_relaxed.owl down regulation of immune response|inhibition of immune response|down-regulation of immune response|downregulation of immune response biological_process owl:Class GO:0047134 biolink:NamedThing protein-disulfide reductase (NAD(P)) activity Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl protein disulfide reductase (NAD(P)H) activity|NAD(P)H:protein-disulfide oxidoreductase activity|protein disulfide reductase activity|protein-disulfide reductase activity|protein disulphide reductase activity|protein-disulphide reductase activity|insulin-glutathione transhydrogenase activity|disulfide reductase activity https://github.com/geneontology/go-ontology/issues/20219 EC:1.8.1.8|MetaCyc:1.6.4.4-RXN molecular_function owl:Class GO:0016668 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, NAD or NADP as acceptor|oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor|oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor|oxidoreductase activity, acting on NADH or NADPH, disulphide as acceptor EC:1.8.1.- GO:0016654 molecular_function owl:Class GO:1900280 biolink:NamedThing negative regulation of CD4-positive, alpha-beta T cell costimulation Any process that stops, prevents or reduces the frequency, rate or extent of CD4-positive, alpha-beta T cell costimulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of CD4-positive, alpha beta T cell costimulation|down-regulation of CD4-positive, alpha beta T cell costimulation|inhibition of CD4-positive, alpha beta T cell costimulation|down regulation of CD4-positive, alpha beta T cell costimulation|downregulation of CD4-positive, alpha beta T cell costimulation rl 2012-04-04T08:56:26Z biological_process owl:Class GO:1900279 biolink:NamedThing regulation of CD4-positive, alpha-beta T cell costimulation Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell costimulation. tmpzr1t_l9r_go_relaxed.owl regulation of CD4-positive, alpha beta T cell costimulation rl 2012-04-04T08:56:15Z biological_process owl:Class GO:0030027 biolink:NamedThing lamellipodium A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Lamellipodia cellular_component owl:Class GO:0001652 biolink:NamedThing granular component A structure found in the nucleolus, which contains nearly completed preribosomal particles destined for the cytoplasm. tmpzr1t_l9r_go_relaxed.owl pars granulosa NIF_Subcellular:sao1217793903 cellular_component owl:Class GO:0008800 biolink:NamedThing beta-lactamase activity Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid. tmpzr1t_l9r_go_relaxed.owl beta-lactamase I-III|cephalosporin-beta-lactamase activity|exopenicillinase activity|beta-lactamase AME I|beta-lactamase A, B, C|penicillinase I, II|beta-lactam hydrolase activity|penicillin beta-lactamase activity|ampicillinase activity|neutrapen|penicillin amido-beta-lactamhydrolase activity EC:3.5.2.6|RHEA:20401|MetaCyc:BETA-LACTAMASE-RXN molecular_function owl:Class GO:0016812 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide. tmpzr1t_l9r_go_relaxed.owl EC:3.5.2.-|Reactome:R-HSA-70906 molecular_function owl:Class GO:0048631 biolink:NamedThing regulation of skeletal muscle tissue growth Any process that modulates the frequency, rate or extent of skeletal muscle growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048638 biolink:NamedThing regulation of developmental growth Any process that modulates the frequency, rate or extent of developmental growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002836 biolink:NamedThing positive regulation of response to tumor cell Any process that activates or increases the frequency, rate, or extent of a response to tumor cell. tmpzr1t_l9r_go_relaxed.owl up regulation of response to tumor cell|stimulation of response to tumor cell|activation of response to tumor cell|upregulation of response to tumor cell|positive regulation of response to tumour cell|up-regulation of response to tumor cell biological_process owl:Class GO:0008135 biolink:NamedThing translation factor activity, RNA binding Functions during translation by binding to RNA during polypeptide synthesis at the ribosome. tmpzr1t_l9r_go_relaxed.owl translation factor activity, nucleic acid binding molecular_function owl:Class GO:0003723 biolink:NamedThing RNA binding Binding to an RNA molecule or a portion thereof. tmpzr1t_l9r_go_relaxed.owl poly(A) RNA binding|poly(A)-RNA binding|poly-A RNA binding|base pairing with RNA Reactome:R-HSA-203922 GO:0044822|GO:0000498 molecular_function owl:Class GO:0034765 biolink:NamedThing regulation of ion transmembrane transport Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl regulation of ion membrane transport|regulation of transmembrane ion transport biological_process owl:Class GO:2000371 biolink:NamedThing regulation of DNA topoisomerase (ATP-hydrolyzing) activity Any process that modulates the frequency, rate or extent of DNA topoisomerase (ATP-hydrolyzing) activity. tmpzr1t_l9r_go_relaxed.owl regulation of DNA topoisomerase type II activity|regulation of deoxyribonucleic topoisomerase activity|regulation of deoxyribonucleate topoisomerase|regulation of DNA topoisomerase (ATP-hydrolysing)|regulation of topoisomerase|regulation of type II DNA topoisomerase activity|regulation of DNA topoisomerase IV activity|regulation of topoisomerase II|regulation of DNA topoisomerase II mah 2011-02-09T02:35:27Z biological_process owl:Class GO:0010911 biolink:NamedThing regulation of isomerase activity Any process that modulates the activity of an isomerase. An isomerase catalyzes the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902393 biolink:NamedThing negative regulation of exodeoxyribonuclease activity Any process that stops, prevents or reduces the frequency, rate or extent of exodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl down regulation of exodeoxyribonuclease activity|downregulation of exodeoxyribonuclease activity|inhibition of exodeoxyribonuclease activity|down-regulation of exodeoxyribonuclease activity jl 2013-09-11T14:56:23Z biological_process owl:Class GO:0051586 biolink:NamedThing positive regulation of dopamine uptake involved in synaptic transmission Any process that activates or increases the frequency, rate or extent of the directed movement of dopamine into a cell. tmpzr1t_l9r_go_relaxed.owl up regulation of dopamine uptake involved in synaptic transmission|up-regulation of dopamine uptake involved in synaptic transmission|upregulation of dopamine uptake involved in synaptic transmission|positive regulation of dopamine import involved in synaptic transmission|activation of dopamine uptake involved in synaptic transmission|stimulation of dopamine uptake involved in synaptic transmission biological_process owl:Class GO:0051944 biolink:NamedThing positive regulation of catecholamine uptake involved in synaptic transmission Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of catecholamine neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl upregulation of catecholamine uptake during transmission of nerve impulse|up-regulation of catecholamine uptake during transmission of nerve impulse|positive regulation of catecholamine neurotransmitter reuptake|positive regulation of catecholamine uptake during transmission of nerve impulse|up regulation of catecholamine uptake during transmission of nerve impulse|positive regulation of catecholamine neurotransmitter uptake|activation of catecholamine uptake during transmission of nerve impulse|stimulation of catecholamine uptake during transmission of nerve impulse biological_process owl:Class GO:1902596 biolink:NamedThing negative regulation of DNA replication origin binding Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication origin binding. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA replication origin binding|downregulation of DNA replication origin binding|downregulation of ARS binding|down-regulation of DNA replication origin binding|down regulation of DNA replication origin binding|down-regulation of ARS binding|negative regulation of ARS binding|down regulation of ARS binding|inhibition of ARS binding mah 2013-12-19T16:19:48Z biological_process owl:Class GO:0030394 biolink:NamedThing fructoseglycine metabolic process The chemical reactions and pathways involving fructoseglycine, a fructose molecule containing a glycine group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl fructoseglycine metabolism biological_process owl:Class GO:0030549 biolink:NamedThing acetylcholine receptor activator activity Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is increased. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098772 biolink:NamedThing molecular function regulator A molecular function regulator regulates the activity of its target via non-covalent binding that does not result in covalent modification to the target. Examples of molecular function regulators include regulatory subunits of multimeric enzymes and channels. Mechanisms of regulation include allosteric changes in the target and competitive inhibition. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20854|https://github.com/geneontology/go-ontology/issues/20862 molecular_function owl:Class GO:1902810 biolink:NamedThing negative regulation of skeletal muscle fiber differentiation Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle fiber differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of skeletal muscle fiber differentiation|down-regulation of skeletal muscle fiber differentiation|inhibition of skeletal muscle fiber differentiation|downregulation of skeletal muscle fiber differentiation mr 2014-03-26T21:18:32Z biological_process owl:Class GO:2001015 biolink:NamedThing negative regulation of skeletal muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-11T08:54:41Z biological_process owl:Class GO:0086101 biolink:NamedThing endothelin receptor signaling pathway involved in heart process An endothelin receptor signaling pathway which contributes to a circulatory system process carried out by the heart. tmpzr1t_l9r_go_relaxed.owl endothelin receptor signalling pathway involved in heart process bf biological_process owl:Class GO:0086103 biolink:NamedThing G protein-coupled receptor signaling pathway involved in heart process An G protein-coupled receptor signaling pathway which contributes to a circulatory system process carried out by the heart. tmpzr1t_l9r_go_relaxed.owl GPCR signaling pathway involved in heart process|GPCR signaling pathway involved in cardiac process|G-protein coupled receptor signalling pathway involved in heart process|G-protein coupled receptor signaling pathway involved in heart process bf 2012-03-19T01:28:23Z biological_process owl:Class GO:0047891 biolink:NamedThing flavone 7-O-beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + 5,7,3',4'-tetrahydroxyflavone = UDP + 7-O-beta-D-glucosyl-5,7,3',4'-tetrahydroxyflavone. tmpzr1t_l9r_go_relaxed.owl UDPglucose-luteolin beta-D-glucosyltransferase activity|UDP-glucose:5,7,3',4'-tetrahydroxyflavone 7-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-luteolin glucosyltransferase activity|UDPglucose-apigenin beta-glucosyltransferase activity|UDPglucose:5,7,3',4'-tetrahydroxyflavone 7-O-beta-D-glucosyltransferase activity|flavone 7-O-b-glucosyltransferase activity|uridine diphosphoglucose-apigenin 7-O-glucosyltransferase activity|UDP-glucose-apigenin beta-glucosyltransferase activity|UDP-glucose-luteolin beta-D-glucosyltransferase activity EC:2.4.1.81|RHEA:19577|MetaCyc:FLAVONE-7-O-BETA-GLUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:2000463 biolink:NamedThing positive regulation of excitatory postsynaptic potential Any process that enhances the establishment or increases the extent of the excitatory postsynaptic potential (EPSP) which is a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl positive regulation of EPSP|positive regulation of excitatory post-synaptic membrane potential rl 2011-03-04T02:43:32Z biological_process owl:Class GO:0050789 biolink:NamedThing regulation of biological process Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. tmpzr1t_l9r_go_relaxed.owl regulation of physiological process GO:0050791 biological_process owl:Class GO:0090119 biolink:NamedThing vesicle-mediated cholesterol transport The directed movement of cholesterol, cholest-5-en-3-beta-ol, or cholesterol-containing compounds, by membrane-bounded vesicles. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T12:14:37Z biological_process owl:Class GO:0016192 biolink:NamedThing vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. tmpzr1t_l9r_go_relaxed.owl vesicle transport|nonselective vesicle transport|vesicular transport|vesicle trafficking|protein sorting along secretory pathway GO:0006899 biological_process owl:Class GO:1904289 biolink:NamedThing regulation of mitotic DNA damage checkpoint Any process that modulates the frequency, rate or extent of mitotic DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl kmv 2015-06-09T13:03:11Z biological_process owl:Class GO:1903345 biolink:NamedThing negative regulation of protein polyglycylation Any process that stops, prevents or reduces the frequency, rate or extent of protein polyglycylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein polyglycylation|inhibition of protein polyglycylation|downregulation of protein polyglycylation|down regulation of protein polyglycylation sart 2014-08-19T09:32:16Z biological_process owl:Class GO:0031400 biolink:NamedThing negative regulation of protein modification process Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein modification|inhibition of protein modification|down regulation of protein modification|downregulation of protein modification biological_process owl:Class GO:0048539 biolink:NamedThing bone marrow development The process whose specific outcome is the progression of the bone marrow over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009888 biolink:NamedThing tissue development The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl histogenesis|histogenesis and organogenesis Wikipedia:Histogenesis biological_process owl:Class GO:0061375 biolink:NamedThing mammillotectal axonal tract development The progression of the mammillotectal tract over time, from its formation to the mature structure. The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:01:14Z biological_process owl:Class GO:0103085 biolink:NamedThing 2-(5'-methylthio)pentylmalate synthase activity Catalysis of the reaction: 2-oxo-7-methylthioheptanoate + acetyl-CoA + H2O <=> H+ + 2-(5'-methylthio)pentylmalate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4169 molecular_function owl:Class GO:0046912 biolink:NamedThing acyltransferase, acyl groups converted into alkyl on transfer Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer https://github.com/geneontology/go-ontology/issues/20486 EC:2.3.3.- molecular_function owl:Class GO:0015787 biolink:NamedThing UDP-glucuronic acid transmembrane transport The directed movement of UDP-glucuronic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucuronic acid is a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronic acid transport biological_process owl:Class GO:0090481 biolink:NamedThing pyrimidine nucleotide-sugar transmembrane transport The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleotide-sugar membrane transport|pyrimidine nucleotide-sugar transport Note that this term is not intended for use in annotating lateral movement within membranes. tb 2012-10-01T16:43:54Z GO:0015781 biological_process owl:Class GO:1990089 biolink:NamedThing response to nerve growth factor A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to nerve growth factor stimulus sl 2013-05-06T17:08:47Z biological_process owl:Class GO:0008513 biolink:NamedThing secondary active organic cation transmembrane transporter activity Enables the transfer of organic cations from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl polyspecific organic cation transmembrane transporter activity|organic cation porter activity Reactome:R-HSA-549241 GO:0015354 molecular_function owl:Class GO:0015291 biolink:NamedThing secondary active transmembrane transporter activity Enables the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy, not direct ATP coupling. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl nitrite/nitrate porter activity|coupled carrier|porters|electrochemical potential-driven transporter activity|secondary carrier-type facilitators|energizer of outer membrane receptor-mediated transport activity|porter activity|ion-gradient-driven energizer activity|multidrug endosomal transmembrane transporter activity|active transporter|heavy metal ion porter activity|galactose/glucose (methylgalactoside) porter activity TC:2.A|Reactome:R-HSA-199216 GO:0015570|GO:0015290|GO:0015353|GO:0015404 molecular_function owl:Class GO:0009416 biolink:NamedThing response to light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009314 biolink:NamedThing response to radiation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation. tmpzr1t_l9r_go_relaxed.owl response to electromagnetic radiation stimulus|response to radiation stimulus Note that 'radiation' refers to electromagnetic radiation of any wavelength. biological_process owl:Class GO:1901622 biolink:NamedThing positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning Any process that activates or increases the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning. tmpzr1t_l9r_go_relaxed.owl up-regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|activation of hh signaling pathway involved in dorsal/ventral neural tube patterning|positive regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|upregulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|up regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|up regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|activation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|upregulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|activation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|positive regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|up-regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|up regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|activation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|upregulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|positive regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|up-regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|upregulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|up regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|up-regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning krc 2012-11-13T20:12:06Z biological_process owl:Class GO:0043330 biolink:NamedThing response to exogenous dsRNA Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus. tmpzr1t_l9r_go_relaxed.owl response to exogenous double-stranded RNA|response to viral dsRNA Note that the presence of exogenous double-stranded RNA is usually indicative of a viral infection. Consider also annotating to 'response to virus ; GO:0009615'. biological_process owl:Class GO:0043331 biolink:NamedThing response to dsRNA Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. tmpzr1t_l9r_go_relaxed.owl response to double-stranded RNA biological_process owl:Class GO:0009211 biolink:NamedThing pyrimidine deoxyribonucleoside triphosphate metabolic process The chemical reactions and pathways involving pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside triphosphate metabolism biological_process owl:Class GO:0009147 biolink:NamedThing pyrimidine nucleoside triphosphate metabolic process The chemical reactions and pathways involving pyrimidine nucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside triphosphate metabolism biological_process owl:Class GO:0061960 biolink:NamedThing regulation of heme oxygenase activity Any process that modulates the frequency, or rate of heme oxygenase activity. tmpzr1t_l9r_go_relaxed.owl dph 2018-01-22T20:24:06Z biological_process owl:Class GO:0098524 biolink:NamedThing neuromuscular junction of somatic muscle myotube A neuromuscular junction in which the target muscle cell is a somatic muscle myotube, such as an arthropod somatic muscle cell. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-14T12:05:43Z cellular_component owl:Class GO:0098523 biolink:NamedThing neuromuscular junction of myotube A neuromuscular junction in which the target muscle cell is a myotube. tmpzr1t_l9r_go_relaxed.owl In vertebrates, the term 'neuromuscular junction' is limited to synapses targeting the myotubes of skeletal muscle (AKA skeletal muscle fibers). Neuromuscular junctions targeting other muscle cell types exist in invertebrates such as the mononucleate somatic muscles of nematodes. dos 2013-10-14T12:05:12Z cellular_component owl:Class GO:0016557 biolink:NamedThing peroxisome membrane biogenesis The process in which a peroxisome membrane is synthesized, aggregates, and bonds together. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044091 biolink:NamedThing membrane biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102781 biolink:NamedThing isofucosterol hydroxylase activity Catalysis of the reaction: H+ + isofucosterol + O2 + NADPH <=> (22alpha)-hydroxy-isofucosterol + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7877 molecular_function owl:Class GO:1902179 biolink:NamedThing verruculogen metabolic process The chemical reactions and pathways involving verruculogen. tmpzr1t_l9r_go_relaxed.owl verruculogen metabolism di 2013-05-30T17:44:25Z biological_process owl:Class GO:0035834 biolink:NamedThing indole alkaloid metabolic process The chemical reactions and pathways involving an indole alkaloid, an alkaloid containing an indole skeleton. tmpzr1t_l9r_go_relaxed.owl indole alkaloid metabolism bf 2011-05-04T03:17:44Z biological_process owl:Class GO:0070873 biolink:NamedThing regulation of glycogen metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glycogen. tmpzr1t_l9r_go_relaxed.owl regulation of glycogen metabolism mah 2009-08-20T02:44:53Z biological_process owl:Class GO:0090615 biolink:NamedThing mitochondrial mRNA processing Steps involved in processing precursor RNAs arising from transcription of operons in the mitochondrial genome into mature mRNAs. tmpzr1t_l9r_go_relaxed.owl tb 2014-10-24T12:43:27Z biological_process owl:Class GO:0000963 biolink:NamedThing mitochondrial RNA processing The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901281 biolink:NamedThing fructoselysine catabolic process The chemical reactions and pathways resulting in the breakdown of fructoselysine. tmpzr1t_l9r_go_relaxed.owl fructosyllysine breakdown|fructosyllysine catabolism|fructosyllysine degradation|fructosyllysine catabolic process yaf 2012-08-17T15:04:43Z biological_process owl:Class GO:0030393 biolink:NamedThing fructoselysine metabolic process The chemical reactions and pathways involving fructoselysine, a fructose molecule containing a lysine group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl fructoselysine metabolism biological_process owl:Class GO:0072745 biolink:NamedThing cellular response to antimycin A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antimycin A stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:31:08Z biological_process owl:Class GO:0008150 biolink:NamedThing biological_process A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. tmpzr1t_l9r_go_relaxed.owl single-organism process|biological process|physiological process|single organism process Wikipedia:Biological_process Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. jl 2012-09-19T15:05:24Z GO:0000004|GO:0007582|GO:0044699 biological_process owl:Class GO:0047877 biolink:NamedThing ephedrine dehydrogenase activity Catalysis of the reaction: (1R,2S)-ephedrine + NAD(+) = (R)-2-methylimino-1-phenylpropan-1-ol + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (-)-ephedrine:NAD+ 2-oxidoreductase activity EC:1.5.1.18|MetaCyc:EPHEDRINE-DEHYDROGENASE-RXN|RHEA:16289|KEGG_REACTION:R03614 molecular_function owl:Class GO:0061348 biolink:NamedThing planar cell polarity pathway involved in ventricular septum morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the ventricular septum. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T10:47:49Z biological_process owl:Class GO:0061346 biolink:NamedThing planar cell polarity pathway involved in heart morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-30T12:47:24Z biological_process owl:Class GO:0003278 biolink:NamedThing apoptotic process involved in heart morphogenesis Any apoptotic process that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in heart morphogenesis dph 2009-10-20T09:40:22Z biological_process owl:Class GO:0006915 biolink:NamedThing apoptotic process A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. tmpzr1t_l9r_go_relaxed.owl activation of apoptosis|apoptotic cell death|induction of apoptosis by p53|apoptosis activator activity|apoptotic program|signaling (initiator) caspase activity|caspase-dependent programmed cell death|programmed cell death by apoptosis|apoptosis signaling|cellular suicide|commitment to apoptosis|cell suicide|apoptotic programmed cell death|induction of apoptosis|apoptosis|type I programmed cell death Wikipedia:Apoptosis GO:0008632|GO:0006917 biological_process owl:Class GO:0009912 biolink:NamedThing auditory receptor cell fate commitment The process in which the cellular identity of auditory hair cells is acquired and determined. tmpzr1t_l9r_go_relaxed.owl auditory hair cell fate commitment biological_process owl:Class GO:0060120 biolink:NamedThing inner ear receptor cell fate commitment The process in which a cell becomes committed to become an inner ear receptor cell. tmpzr1t_l9r_go_relaxed.owl inner ear hair cell fate commitment biological_process owl:Class GO:0044858 biolink:NamedThing plasma membrane raft polarization The clustering and aggregation of a plasma membrane into domains. This serves as a mechanism to compartmentalize cellular activities and to establish cell polarity. tmpzr1t_l9r_go_relaxed.owl plasma membrane polarization jl 2014-07-23T16:21:39Z biological_process owl:Class GO:0044855 biolink:NamedThing plasma membrane raft distribution The process that establishes the spatial arrangement of membrane rafts within a plasma membrane. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:00:41Z biological_process owl:Class GO:0072159 biolink:NamedThing epithelial cell migration involved in proximal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to proximal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:37:08Z biological_process owl:Class GO:0010631 biolink:NamedThing epithelial cell migration The orderly movement of an epithelial cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900054 biolink:NamedThing positive regulation of retinoic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of retinoic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of retinoic acid biosynthetic process|up regulation of retinoic acid anabolic process|up-regulation of retinoic acid anabolic process|up-regulation of retinoic acid biosynthetic process|upregulation of retinoic acid anabolic process|upregulation of retinoic acid biosynthetic process|positive regulation of retinoic acid anabolic process|activation of retinoic acid anabolic process|activation of retinoic acid biosynthetic process yaf 2012-01-20T09:55:52Z biological_process owl:Class GO:0001099 biolink:NamedThing basal RNA polymerase II transcription machinery binding Binding to a component of the basal transcription machinery for RNA polymerase II which is composed of the RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits, and the basal RNA polymerase II transcription factors, the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase. tmpzr1t_l9r_go_relaxed.owl basal RNAP II transcription machinery binding Note that the definition of basal, or general, transcription factors has typically been done at a small number of well characterized activator-independent promoters. At an activator-dependent promoter, one or more additional factors are generally required in addition to the basal factors. krc 2010-11-24T12:54:33Z molecular_function owl:Class GO:0001098 biolink:NamedThing basal transcription machinery binding Binding to a component of the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase. tmpzr1t_l9r_go_relaxed.owl Note that the definition of basal, or general, transcription factors has typically been done at a small number of well characterized activator-independent promoters. At an activator-dependent promoter, one or more additional factors are generally required in addition to the basal factors. krc 2010-11-24T12:50:49Z molecular_function owl:Class GO:0009239 biolink:NamedThing enterobactin biosynthetic process The chemical reactions and pathways resulting in the formation of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. tmpzr1t_l9r_go_relaxed.owl enterochelin biosynthesis|enterobactin formation|enterobactin anabolism|enterobactin synthetase|enterobactin synthesis|enterobactin biosynthesis|enterobactin biosynthetic process, peptide modification|enterochelin biosynthetic process|enterobactin biosynthetic process, peptide formation MetaCyc:ENTBACSYN-PWY GO:0031191|GO:0031192 biological_process owl:Class GO:0009238 biolink:NamedThing enterobactin metabolic process The chemical reactions and pathways involving enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. tmpzr1t_l9r_go_relaxed.owl enterobactin metabolism|enterochelin metabolic process|enterochelin metabolism biological_process owl:Class GO:0051776 biolink:NamedThing detection of redox state The series of events in which a chemical stimulus indicating redox state is received and converted into a molecular signal. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. tmpzr1t_l9r_go_relaxed.owl redox sensing biological_process owl:Class GO:0051775 biolink:NamedThing response to redox state Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. tmpzr1t_l9r_go_relaxed.owl redox signal response GO:0006980 biological_process owl:Class GO:1900112 biolink:NamedThing regulation of histone H3-K9 trimethylation Any process that modulates the frequency, rate or extent of histone H3-K9 trimethylation. tmpzr1t_l9r_go_relaxed.owl bf 2012-02-21T09:09:49Z biological_process owl:Class GO:1901479 biolink:NamedThing benomyl transmembrane transporter activity Enables the transfer of benomyl from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl benomyl transporter activity tb 2012-10-04T23:21:10Z GO:0015242 molecular_function owl:Class GO:0042887 biolink:NamedThing amide transmembrane transporter activity Enables the transfer of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl amine/amide/polyamine channel activity molecular_function owl:Class GO:0047499 biolink:NamedThing calcium-independent phospholipase A2 activity Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. This reaction does not require Ca2+. tmpzr1t_l9r_go_relaxed.owl calcium-independent cytosolic phospholipase A2 activity Reactome:R-HSA-8952251 molecular_function owl:Class GO:0004623 biolink:NamedThing phospholipase A2 activity Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phospholipid + H2O = 1-acyl-sn-glycero-3-phospholipid + a fatty acid. This reaction removes the fatty acid attached to the sn2-position. Substrates include phosphatidylcholine, phosphatidylethanolamine, choline plasmalogen and phosphatides. tmpzr1t_l9r_go_relaxed.owl lecithinase A activity|phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine)|phosphatidase activity|phosphatidylcholine 2-acylhydrolase activity|secreted phospholipase A2 activity|phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine)|cytosolic phospholipase A2 activity|phosphatidolipase activity https://github.com/geneontology/go-ontology/issues/21259 EC:3.1.1.4|Reactome:R-HSA-1602398|RHEA:15801|MetaCyc:RXN-15067|Reactome:R-HSA-1482656|Reactome:R-HSA-1482897|Reactome:R-HSA-1482759|Reactome:R-HSA-1482816|Reactome:R-HSA-1482778|Reactome:R-HSA-1602374|Reactome:R-HSA-1482884|Reactome:R-HSA-1482825|Reactome:R-HSA-1482907|Reactome:R-HSA-8848484|Reactome:R-HSA-1482887|Reactome:R-HSA-1602417|Reactome:R-HSA-1482856|Reactome:R-HSA-1482745|Reactome:R-HSA-1482604|Reactome:R-HSA-1602399|Reactome:R-HSA-1482900|Reactome:R-HSA-1482771|Reactome:R-HSA-1602368|Reactome:R-HSA-1602446|MetaCyc:PHOSPHOLIPASE-A2-RXN|Reactome:R-HSA-1482868|Reactome:R-HSA-1482679|Reactome:R-HSA-1602377|Reactome:R-HSA-1482776 GO:0102568|GO:0102567 molecular_function owl:Class GO:0051778 biolink:NamedThing ent-7-alpha-hydroxykaurenoate oxidase activity Catalysis of the reaction: ent-7-alpha-hydroxykaurenoate + NADPH + H+ + O2 = gibberellin 12-aldehyde + NADP+ + 2 H2O. This is the second of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-160|RHEA:22904 Note that the enzyme ent-kaurenoate oxidase also catalyzes the reactions represented by the molecular function terms 'ent-kaurenoate oxidase activity ; GO:0051777' and 'gibberellin 12-aldehyde oxidase activity ; GO:0051779'. molecular_function owl:Class GO:0036268 biolink:NamedThing swimming Self-propelled movement of an organism from one location to another through water, often by means of active fin movement. tmpzr1t_l9r_go_relaxed.owl For behavioral aspects of swimming, consider instead annotating to 'swimming behavior ; GO:0036269'. bf 2012-07-04T10:12:24Z biological_process owl:Class GO:0040011 biolink:NamedThing locomotion Self-propelled movement of a cell or organism from one location to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050667 biolink:NamedThing homocysteine metabolic process The chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. Homocysteine is an important intermediate in the metabolic reactions of its S-methyl derivative, methionine. tmpzr1t_l9r_go_relaxed.owl Hcy metabolism|Hcy metabolic process|homocysteine metabolism biological_process owl:Class GO:0000096 biolink:NamedThing sulfur amino acid metabolic process The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine. tmpzr1t_l9r_go_relaxed.owl sulfur amino acid metabolism|sulphur amino acid metabolic process|sulphur amino acid metabolism biological_process owl:Class GO:0120294 biolink:NamedThing peptide serotonyltransferase activity Catalysis of the reaction: L-glutaminyl-[protein] + serotonin = 5-serotonyl-L-glutamyl-[protein] + NH4(+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 RHEA:66552 krc 2021-01-19T02:07:56Z molecular_function owl:Class GO:0106303 biolink:NamedThing mannogen metabolic process The chemical reactions and pathways involving mannogen, a mannose-containing polysaccharide that is a major energy reserve in Leishmania. tmpzr1t_l9r_go_relaxed.owl beta-1,2-mannan metabolic process|mannogen metabolism hjd 2020-09-09T13:49:42Z biological_process owl:Class GO:0044264 biolink:NamedThing cellular polysaccharide metabolic process The chemical reactions and pathways involving polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular glycan metabolism|cellular glycan metabolic process|cellular polysaccharide metabolism biological_process owl:Class GO:0060170 biolink:NamedThing ciliary membrane The portion of the plasma membrane surrounding a cilium. tmpzr1t_l9r_go_relaxed.owl cilium membrane|flagellum membrane|cilial membrane|flagellar membrane Note that cilia and eukaryotic flagella are deemed to be equivalent. GO:0020017 cellular_component owl:Class GO:0010064 biolink:NamedThing embryonic shoot morphogenesis The process in which the anatomical structures of embryonic shoot are generated and organized. tmpzr1t_l9r_go_relaxed.owl primary shoot system morphogenesis biological_process owl:Class GO:0010016 biolink:NamedThing shoot system morphogenesis The process in which the anatomical structures of the shoot are generated and organized. The shoot is the part of a seed plant body that is usually above ground. tmpzr1t_l9r_go_relaxed.owl shoot morphogenesis biological_process owl:Class GO:0075321 biolink:NamedThing oomycete sporangium development The process that leads to the development of an oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiates, through specialized cleavage vesicles, into between 10 and 30 zoospores, which are laterally flagellated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001882 biolink:NamedThing nucleoside binding Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036094 biolink:NamedThing small molecule binding Binding to a small molecule, any low molecular weight, monomeric, non-encoded molecule. tmpzr1t_l9r_go_relaxed.owl Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. bf 2012-01-17T04:20:34Z molecular_function owl:Class GO:1905261 biolink:NamedThing regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination Any process that modulates the frequency, rate or extent of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination. tmpzr1t_l9r_go_relaxed.owl se 2016-06-13T20:45:02Z biological_process owl:Class GO:1903341 biolink:NamedThing regulation of meiotic DNA double-strand break formation Any process that modulates the frequency, rate or extent of meiotic DNA double-strand break formation. tmpzr1t_l9r_go_relaxed.owl mcc 2014-08-18T21:31:54Z biological_process owl:Class GO:1904498 biolink:NamedThing protein localization to mitotic actomyosin contractile ring Any protein localization to actomyosin contractile ring that is involved in mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl protein localisation to actomyosin contractile ring involved in cytokinesis after mitosis|protein localisation to actomyosin contractile ring involved in mitotic cytokinesis|protein localization to actomyosin contractile ring during mitotic cytokinesis|protein localization to actomyosin contractile ring involved in cytokinesis after mitosis|protein localization to actomyosin contractile ring involved in mitotic cytokinesis mah 2015-07-22T14:30:57Z biological_process owl:Class GO:0042076 biolink:NamedThing protein phosphate-linked glycosylation The glycosylation of peptidyl-amino acids through a phosphoester bond forming, for example, GlcNAc-alpha-1-P-Ser residues. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphate-linked glycosylation|phosphoglycosylation biological_process owl:Class GO:0006486 biolink:NamedThing protein glycosylation A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. tmpzr1t_l9r_go_relaxed.owl protein amino acid glycosylation|protein-carbohydrate complex assembly GO:0065006 biological_process owl:Class GO:0051234 biolink:NamedThing establishment of localization Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation. tmpzr1t_l9r_go_relaxed.owl establishment of localisation biological_process owl:Class GO:0007512 biolink:NamedThing adult heart development The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl adult cardiac development biological_process owl:Class GO:0007507 biolink:NamedThing heart development The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. tmpzr1t_l9r_go_relaxed.owl cardiac development|dorsal vessel development Wikipedia:Heart_development GO:0007511 biological_process owl:Class GO:0046433 biolink:NamedThing 2-aminoethylphosphonate metabolic process The chemical reactions and pathways involving 2-aminoethylphosphonate, most abundant and ubiquitous of naturally occurring phosphonates. It is typically found as a conjugate of glycans, lipids, and proteins, which in turn perform essential biochemical functions in specialized lower organisms. tmpzr1t_l9r_go_relaxed.owl ciliatine metabolism|2-phosphonoethylamine metabolic process|2-aminoethylphosphonate metabolism|ciliatine metabolic process|2-phosphonoethylamine metabolism biological_process owl:Class GO:0007516 biolink:NamedThing hemocyte development The process whose specific outcome is the progression of the hemocyte over time, from its formation to the mature structure. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. tmpzr1t_l9r_go_relaxed.owl arthropod blood cell development biological_process owl:Class GO:0048468 biolink:NamedThing cell development The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl terminal differentiation biological_process owl:Class GO:0008765 biolink:NamedThing UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity Catalysis of the reaction: meso-2,6-diaminopimelate + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylmuramyl-tripeptide synthetase activity|UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase activity|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2,6-diaminoheptanedioate gamma-ligase (ADP-forming)|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2,6-diamino-heptanedioate ligase (ADP-forming) activity|MurE synthetase activity MetaCyc:UDP-NACMURALGLDAPLIG-RXN|RHEA:23676|EC:6.3.2.13|KEGG_REACTION:R02788 molecular_function owl:Class GO:0016881 biolink:NamedThing acid-amino acid ligase activity Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl peptide synthase activity EC:6.3.2.- molecular_function owl:Class GO:0031669 biolink:NamedThing cellular response to nutrient levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031668 biolink:NamedThing cellular response to extracellular stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903267 biolink:NamedThing negative regulation of ornithine catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of ornithine catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of ornithine degradation|down-regulation of ornithine breakdown|down-regulation of ornithine catabolism|downregulation of ornithine catabolic process|down regulation of ornithine breakdown|negative regulation of ornithine degradation|inhibition of ornithine degradation|down-regulation of ornithine catabolic process|negative regulation of ornithine breakdown|inhibition of ornithine catabolic process|negative regulation of ornithine catabolism|down regulation of ornithine catabolic process|down regulation of ornithine degradation|downregulation of ornithine catabolism|inhibition of ornithine catabolism|inhibition of ornithine breakdown|downregulation of ornithine degradation|downregulation of ornithine breakdown|down regulation of ornithine catabolism An example of this is ARGI in Saccharomyces cerevisiae (P00812) in PMID:12679340 (inferred from direct assay). bhm 2014-08-08T08:29:42Z biological_process owl:Class GO:1903266 biolink:NamedThing regulation of ornithine catabolic process Any process that modulates the frequency, rate or extent of ornithine catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ornithine breakdown|regulation of ornithine degradation|regulation of ornithine catabolism An example of this is ARGI in Saccharomyces cerevisiae (P00812) in PMID:12679340 (inferred from direct assay). bhm 2014-08-08T08:29:33Z biological_process owl:Class GO:0051094 biolink:NamedThing positive regulation of developmental process Any process that activates or increases the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). tmpzr1t_l9r_go_relaxed.owl activation of developmental process|stimulation of developmental process|up-regulation of developmental process|up regulation of developmental process|upregulation of developmental process biological_process owl:Class GO:0045220 biolink:NamedThing positive regulation of FasL production Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL. tmpzr1t_l9r_go_relaxed.owl positive regulation of FasL biosynthesis|stimulation of FasL biosynthetic process|positive regulation of FasL synthesis|positive regulation of FasL anabolism|up-regulation of FasL biosynthetic process|upregulation of FasL biosynthetic process|positive regulation of FasL formation|positive regulation of FasL biosynthetic process|up regulation of FasL biosynthetic process|activation of FasL biosynthetic process biological_process owl:Class GO:0030243 biolink:NamedThing cellulose metabolic process The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. tmpzr1t_l9r_go_relaxed.owl cellulose metabolism GO:0016177 biological_process owl:Class GO:0051273 biolink:NamedThing beta-glucan metabolic process The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl beta-glucan metabolism biological_process owl:Class GO:0033260 biolink:NamedThing nuclear DNA replication The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle. tmpzr1t_l9r_go_relaxed.owl DNA replication during S phase|DNA replication involved in S phase|nuclear cell cycle DNA replication|DNA replication involved in S-phase biological_process owl:Class GO:0044786 biolink:NamedThing cell cycle DNA replication The DNA-dependent DNA replication that takes place as part of the cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-05-02T15:52:22Z biological_process owl:Class GO:0014742 biolink:NamedThing positive regulation of muscle hypertrophy Any process that activates or increases the frequency, rate or extent of muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018181 biolink:NamedThing peptidyl-arginine C5-methylation The methylation of peptidyl-arginine on the carbon 5 (C5) residue to form peptidyl-5-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl peptidyl-arginine 5-methylation RESID:AA0272 biological_process owl:Class GO:0035245 biolink:NamedThing peptidyl-arginine C-methylation The addition of a methyl group onto a carbon atom of an arginine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060549 biolink:NamedThing regulation of fructose 1,6-bisphosphate 1-phosphatase activity Any process that modulates the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:07:32Z biological_process owl:Class GO:0032113 biolink:NamedThing regulation of carbohydrate phosphatase activity Any process that modulates the frequency, rate or extent of carbohydrate phosphatase activity, the catalysis of the hydrolysis of phosphate from a carbohydrate phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031538 biolink:NamedThing negative regulation of anthocyanin metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. tmpzr1t_l9r_go_relaxed.owl down-regulation of anthocyanin metabolic process|inhibition of anthocyanin metabolic process|negative regulation of anthocyanin metabolism|down regulation of anthocyanin metabolic process|downregulation of anthocyanin metabolic process biological_process owl:Class GO:0009892 biolink:NamedThing negative regulation of metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of organismal metabolism|negative regulation of multicellular organismal metabolic process|negative regulation of metabolism|down-regulation of metabolic process|down regulation of metabolic process|inhibition of metabolic process|downregulation of metabolic process|inhibition of organismal metabolic process GO:0044252 biological_process owl:Class GO:0048875 biolink:NamedThing chemical homeostasis within a tissue Any process involved in the maintenance of the internal steady state of the amount of a chemical at the level of the tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001894 biolink:NamedThing tissue homeostasis A homeostatic process involved in the maintenance of an internal steady state within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function. tmpzr1t_l9r_go_relaxed.owl tissue maintenance biological_process owl:Class GO:0033496 biolink:NamedThing sinapate metabolic process The chemical reactions and pathways involving sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl sinapate metabolism biological_process owl:Class GO:0044542 biolink:NamedThing plasminogen activation in other organism The chemical reactions and pathways performed by an organism resulting in the processing of inactive plasminogen to active plasmin in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-22T11:40:03Z biological_process owl:Class GO:0031639 biolink:NamedThing plasminogen activation The process in which inactive plasminogen is processed to active plasmin. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide. tmpzr1t_l9r_go_relaxed.owl cleavage of plasminogen to plasmin biological_process owl:Class GO:1902117 biolink:NamedThing positive regulation of organelle assembly Any process that activates or increases the frequency, rate or extent of organelle assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of organelle assembly|up regulation of organelle assembly|activation of organelle assembly|upregulation of organelle assembly pr 2013-05-14T09:43:36Z biological_process owl:Class GO:1903568 biolink:NamedThing negative regulation of protein localization to ciliary membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to ciliary membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation in ciliary membrane|negative regulation of protein localisation to ciliary membrane|down-regulation of protein localization to ciliary membrane|down-regulation of protein localization in ciliary membrane|downregulation of protein localisation in ciliary membrane|negative regulation of protein localization in ciliary membrane|downregulation of protein localization to ciliary membrane|down regulation of protein localization to ciliary membrane|down-regulation of protein localisation in ciliary membrane|inhibition of protein localization to ciliary membrane|downregulation of protein localisation to ciliary membrane|down regulation of protein localization in ciliary membrane|down-regulation of protein localisation to ciliary membrane|inhibition of protein localisation in ciliary membrane|down regulation of protein localisation in ciliary membrane|down regulation of protein localisation to ciliary membrane|downregulation of protein localization in ciliary membrane|inhibition of protein localisation to ciliary membrane|inhibition of protein localization in ciliary membrane krc 2014-10-24T21:32:59Z biological_process owl:Class GO:1905476 biolink:NamedThing negative regulation of protein localization to membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of protein localization in membrane|downregulation of protein localization in membrane|downregulation of protein localisation in membrane|negative regulation of protein localization in membrane|down-regulation of protein localisation in membrane|down regulation of protein localization to membrane|negative regulation of protein localisation in membrane|down-regulation of protein localization to membrane|down-regulation of protein localization in membrane|down regulation of protein localization in membrane|inhibition of protein localisation in membrane|downregulation of protein localization to membrane|down regulation of protein localisation in membrane|inhibition of protein localization to membrane bc 2016-09-21T16:20:10Z biological_process owl:Class GO:1990686 biolink:NamedThing LDL-containing protein-lipid-RNA complex A protein-lipid-RNA complex containing separate low-density lipoprotein (LDL), lipid and RNA molecules. Separate in this context means not covalently bound to each other. tmpzr1t_l9r_go_relaxed.owl Examples of LDL-containing protein-lipid-RNA complexes are described in PMID:21423178 and PMID:23559634, both showing evidence that high-density lipoprotein (HDL) and, to a lesser extent, low-density lipoprotein (HDL) transport endogenous microRNAs (miRNAs) and deliver them to recipient cells with functional targeting capabilities. Also see fig. 1 in the review PMID:22028337. Not to be confused with GO:0034362 'low-density lipoprotein particle', which describe complexes of proteins and lipids only, without RNAs. pr 2015-03-11T15:11:34Z cellular_component owl:Class GO:1990684 biolink:NamedThing protein-lipid-RNA complex A macromolecular complex containing separate protein, lipid and RNA molecules. Separate in this context means not covalently bound to each other. tmpzr1t_l9r_go_relaxed.owl miRNA-lipoprotein complex Examples of protein-lipid-RNA complexes are described in PMID:21423178 and PMID:23559634, both showing evidence that high-density lipoprotein (HDL) and, to a lesser extent, low-density lipoprotein (HDL) transport endogenous microRNAs (miRNAs) and deliver them to recipient cells with functional targeting capabilities. Also see fig. 1 in the review PMID:22028337. Not to be confused with GO:0034364 'high-density lipoprotein particle' or GO:0034362 'low-density lipoprotein particle', which describe complexes of proteins and lipids only, without RNAs. pr 2015-03-11T14:24:33Z cellular_component owl:Class GO:0030049 biolink:NamedThing muscle filament sliding The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033275 biolink:NamedThing actin-myosin filament sliding The sliding movement of actin thin filaments and myosin thick filaments past each other. tmpzr1t_l9r_go_relaxed.owl actin filament sliding biological_process owl:Class GO:1900349 biolink:NamedThing negative regulation of methane biosynthetic process from methylamine Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from methylamine. tmpzr1t_l9r_go_relaxed.owl down-regulation of methane biosynthetic process from methylamine|inhibition of methane biosynthetic process from methylamine|down regulation of methane biosynthetic process from methylamine|downregulation of methane biosynthetic process from methylamine tt 2012-04-06T02:12:04Z biological_process owl:Class GO:0051172 biolink:NamedThing negative regulation of nitrogen compound metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl inhibition of nitrogen metabolic process|negative regulation of nitrogen metabolism|down-regulation of nitrogen metabolic process|down regulation of nitrogen metabolic process|negative regulation of nitrogen metabolic process|downregulation of nitrogen metabolic process biological_process owl:Class GO:0001737 biolink:NamedThing establishment of imaginal disc-derived wing hair orientation Orientation of hairs in the imaginal disc-derived wing along a proximal-distal axis, such that each cell of the wing produces one wing hair which points in a distal direction. tmpzr1t_l9r_go_relaxed.owl establishment of wing hair orientation biological_process owl:Class GO:0045859 biolink:NamedThing regulation of protein kinase activity Any process that modulates the frequency, rate or extent of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006882 biolink:NamedThing cellular zinc ion homeostasis Any process involved in the maintenance of an internal steady state of zinc ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl zinc homeostasis biological_process owl:Class GO:0046916 biolink:NamedThing cellular transition metal ion homeostasis Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051280 biolink:NamedThing negative regulation of release of sequestered calcium ion into cytosol Any process that stops, prevents, or reduces the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytosolic release of stored calcium ion (Ca2+)|negative regulation of cytosolic release of sequestered calcium ion (Ca2+)|downregulation of release of sequestered calcium ion into cytosol|inhibition of release of sequestered calcium ion into cytosol|negative regulation of release of stored calcium ion (Ca2+)|negative regulation of cytoplasmic release of sequestered calcium ion (Ca2+)|negative regulation of calcium ion (Ca2+) mobilization|negative regulation of release of stored calcium ion (Ca2+) into cytosol|negative regulation of release of sequestered calcium ion (Ca2+)|negative regulation of calcium mobilization|negative regulation of release of stored calcium ion (Ca2+) into cytoplasm|negative regulation of cytoplasmic release of stored calcium ion (Ca2+)|down-regulation of release of sequestered calcium ion into cytosol|down regulation of release of sequestered calcium ion into cytosol|negative regulation of release of sequestered calcium ion into cytoplasm biological_process owl:Class GO:0120010 biolink:NamedThing intermembrane phospholipid transfer The transport of phospholipids between membranes in which a phospholipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-16T20:56:03Z biological_process owl:Class GO:0120009 biolink:NamedThing intermembrane lipid transfer The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-16T20:30:42Z biological_process owl:Class GO:1903742 biolink:NamedThing regulation of anterograde synaptic vesicle transport Any process that modulates the frequency, rate or extent of anterograde synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl kmv 2014-12-12T16:28:27Z biological_process owl:Class GO:1902803 biolink:NamedThing regulation of synaptic vesicle transport Any process that modulates the frequency, rate or extent of synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic vesicle fusion|regulation of synaptic vesicle fission kmv 2014-03-25T14:56:34Z biological_process owl:Class GO:0035895 biolink:NamedThing modulation of mast cell degranulation in other organism Any process in which an organism modulates the frequency, rate or extent of blood mast cell degranulation in another organism. Mast cell degranulation is the regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell. tmpzr1t_l9r_go_relaxed.owl regulation of mast cell degranulation in other organism bf 2011-06-15T02:46:50Z biological_process owl:Class GO:0043304 biolink:NamedThing regulation of mast cell degranulation Any process that modulates the frequency, rate, or extent of mast cell degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of mast cell granule exocytosis biological_process owl:Class GO:0046809 biolink:NamedThing replication compartment Globular nuclear domains where the transcription and replication of the viral genome occurs. More than one site can be present simultaneously. tmpzr1t_l9r_go_relaxed.owl RC cellular_component owl:Class GO:0039715 biolink:NamedThing nuclear viral factory A viral factory located in the nucleus of a host cell. tmpzr1t_l9r_go_relaxed.owl bf 2013-12-19T15:18:07Z cellular_component owl:Class GO:0039563 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of STAT1 activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of a JAK-STAT signal cascade in a host organism by reducing the activity of host STAT1 (signal transducer and activator of transcription 1). tmpzr1t_l9r_go_relaxed.owl suppression by virus of host STAT1 activity|inhibition by virus of host STAT1 activity|inhibition of host STAT1 by virus https://github.com/geneontology/go-ontology/issues/21963 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-03-12T02:35:39Z biological_process owl:Class GO:0039562 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of STAT activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of a JAK-STAT signal cascade in a host organism by reducing the activity of host STAT (signal transducer and activator of transcription). STATs are SH2 domain-containing proteins which lie downstream of many signaling receptors. Upon phosphorylation by JAKs, STAT proteins hetero- or homo-dimerize and translocate to the nucleus to activate transcription of target genes. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host signal transducer and activator of transcription activity|inhibition by virus of host STAT activity|suppression by virus of host STAT activity https://github.com/geneontology/go-ontology/issues/21963 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-03-12T02:28:39Z biological_process owl:Class GO:0048534 biolink:NamedThing hematopoietic or lymphoid organ development The process whose specific outcome is the progression of any organ involved in hematopoiesis (also known as hemopoiesis) or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation. tmpzr1t_l9r_go_relaxed.owl hemopoietic or lymphoid organ development|haemopoietic or lymphoid organ development|haematopoietic or lymphoid organ development biological_process owl:Class GO:0006727 biolink:NamedThing ommochrome biosynthetic process The chemical reactions and pathways resulting in the formation of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye. tmpzr1t_l9r_go_relaxed.owl ommochrome formation|ommochrome biosynthesis|ommochrome synthesis|ommochrome anabolism biological_process owl:Class GO:1901667 biolink:NamedThing negative regulation of skeletal muscle satellite cell activation involved in skeletal muscle regeneration Any process that stops, prevents or reduces the frequency, rate or extent of satellite cell activation involved in skeletal muscle regeneration. tmpzr1t_l9r_go_relaxed.owl down regulation of satellite cell activation involved in skeletal muscle regeneration|downregulation of satellite cell activation involved in skeletal muscle regeneration|inhibition of satellite cell activation involved in skeletal muscle regeneration|down-regulation of satellite cell activation involved in skeletal muscle regeneration dph 2012-11-21T16:21:11Z biological_process owl:Class GO:0043417 biolink:NamedThing negative regulation of skeletal muscle tissue regeneration Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle regeneration. tmpzr1t_l9r_go_relaxed.owl down regulation of skeletal muscle regeneration|down-regulation of skeletal muscle regeneration|inhibition of skeletal muscle regeneration|downregulation of skeletal muscle regeneration biological_process owl:Class GO:0042246 biolink:NamedThing tissue regeneration The regrowth of lost or destroyed tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048589 biolink:NamedThing developmental growth The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044361 biolink:NamedThing negative regulation of voltage-gated potassium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a voltage-gated potassium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T02:11:52Z biological_process owl:Class GO:0044360 biolink:NamedThing modulation of voltage-gated potassium channel activity in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of a voltage-gated potassium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T02:09:28Z biological_process owl:Class GO:1900617 biolink:NamedThing emericellamide A biosynthetic process The chemical reactions and pathways resulting in the formation of emericellamide A. tmpzr1t_l9r_go_relaxed.owl emericellamide A anabolism|emericellamide A synthesis|emericellamide A formation|emericellamide A biosynthesis di 2012-05-15T08:00:27Z biological_process owl:Class GO:1900615 biolink:NamedThing emericellamide A metabolic process The chemical reactions and pathways involving emericellamide A. tmpzr1t_l9r_go_relaxed.owl emericellamide A metabolism di 2012-05-15T07:59:59Z biological_process owl:Class GO:1901078 biolink:NamedThing negative regulation of relaxation of muscle Any process that stops, prevents or reduces the frequency, rate or extent of relaxation of muscle. tmpzr1t_l9r_go_relaxed.owl downregulation of relaxation of muscle|down-regulation of relaxation of muscle|inhibition of relaxation of muscle|down regulation of relaxation of muscle jl 2012-07-04T10:44:54Z biological_process owl:Class GO:1901077 biolink:NamedThing regulation of relaxation of muscle Any process that modulates the frequency, rate or extent of relaxation of muscle. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T10:44:30Z biological_process owl:Class GO:1903551 biolink:NamedThing regulation of extracellular exosome assembly Any process that modulates the frequency, rate or extent of extracellular vesicular exosome assembly. tmpzr1t_l9r_go_relaxed.owl regulation of extracellular vesicular exosome assembly pga 2014-10-20T15:37:25Z biological_process owl:Class GO:0099565 biolink:NamedThing chemical synaptic transmission, postsynaptic The part of synaptic transmission occurring in the post-synapse: a signal transduction pathway consisting of neurotransmitter receptor activation and its effects on postsynaptic membrane potential and the ionic composition of the postsynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl postsynaptic process involved in chemical synaptic transmission biological_process owl:Class GO:0007166 biolink:NamedThing cell surface receptor signaling pathway A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl cell surface receptor linked signaling pathway|cell surface receptor linked signalling pathway|cell surface receptor linked signal transduction biological_process owl:Class GO:0007533 biolink:NamedThing mating type switching The conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus. tmpzr1t_l9r_go_relaxed.owl mating type switching and recombination biological_process owl:Class GO:0007531 biolink:NamedThing mating type determination Any process that establishes and transmits the specification of mating type upon an individual. Mating types are the equivalent in microorganisms of the sexes in higher organisms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070874 biolink:NamedThing negative regulation of glycogen metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving glycogen. tmpzr1t_l9r_go_relaxed.owl negative regulation of glycogen metabolism mah 2009-08-20T02:50:41Z biological_process owl:Class GO:0032497 biolink:NamedThing detection of lipopolysaccharide The series of events in which a lipopolysaccharide stimulus is received by a cell and converted into a molecular signal. Lipopolysaccharide is a major component of the cell wall of gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl detection of LPS biological_process owl:Class GO:0032496 biolink:NamedThing response to lipopolysaccharide Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl response to endotoxin|response to LPS biological_process owl:Class GO:0051477 biolink:NamedThing mannosylglycerate transmembrane transporter activity Enables the transfer of a mannosylglycerate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046943 biolink:NamedThing carboxylic acid transmembrane transporter activity Enables the transfer of carboxylic acids from one side of a membrane to the other. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-390347 molecular_function owl:Class GO:1905609 biolink:NamedThing positive regulation of smooth muscle cell-matrix adhesion Any process that activates or increases the frequency, rate or extent of smooth muscle cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl up regulation of smooth muscle cell-matrix adhesion|upregulation of smooth muscle cell-matrix adhesion|up-regulation of smooth muscle cell-matrix adhesion|activation of smooth muscle cell-matrix adhesion sl 2016-10-27T21:58:11Z biological_process owl:Class GO:0001954 biolink:NamedThing positive regulation of cell-matrix adhesion Any process that activates or increases the rate or extent of cell adhesion to an extracellular matrix. tmpzr1t_l9r_go_relaxed.owl stimulation of cell-matrix adhesion|activation of cell-matrix adhesion|up regulation of cell-matrix adhesion|upregulation of cell-matrix adhesion|up-regulation of cell-matrix adhesion biological_process owl:Class GO:0045162 biolink:NamedThing clustering of voltage-gated sodium channels The process in which voltage-gated sodium channels become localized together in high densities. In animals, nodes of Ranvier differ dramatically from internodal axonal regions in very high densities of voltage-dependent sodium (Nav) channels responsible for the rapid, inward ionic currents that produce membrane depolarization. tmpzr1t_l9r_go_relaxed.owl Nav channel clustering|clustering of voltage-dependent sodium channels|clustering of voltage gated sodium channels|voltage-gated sodium channel clustering biological_process owl:Class GO:0045161 biolink:NamedThing neuronal ion channel clustering The process in which voltage-gated ion channels become localized to distinct subcellular domains in the neuron. Specific targeting, clustering, and maintenance of these channels in their respective domains are essential to achieve high conduction velocities of action potential propagation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097140 biolink:NamedThing BIM-BCL-xl complex A heterodimeric protein complex consisting of BIM and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:41:30Z cellular_component owl:Class GO:0097136 biolink:NamedThing Bcl-2 family protein complex A protein complex that consists of members of the Bcl-2 family of anti- and proapoptotic regulators. Bcl-2 proteins respond to cues from various forms of intracellular stress, such as DNA damage or cytokine deprivation, and interact with opposing family members to determine whether or not the caspase proteolytic cascade should be unleashed. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:34:19Z cellular_component owl:Class GO:1903388 biolink:NamedThing regulation of synaptic vesicle uncoating Any process that modulates the frequency, rate or extent of synaptic vesicle uncoating. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic vesicle coat depolymerization|regulation of synaptic vesicle coat protein depolymerization pad 2014-08-27T10:02:53Z biological_process owl:Class GO:1901879 biolink:NamedThing regulation of protein depolymerization Any process that modulates the frequency, rate or extent of protein depolymerization. tmpzr1t_l9r_go_relaxed.owl regulation of protein polymer catabolic process|regulation of protein polymer breakdown|regulation of protein polymer degradation|regulation of protein polymer catabolism rl 2013-02-06T13:57:23Z biological_process owl:Class GO:0000827 biolink:NamedThing inositol-1,3,4,5,6-pentakisphosphate kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + diphospho-1D-myo-inositol tetrakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol tetrakisphosphate is unknown. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855223|Reactome:R-HSA-1855181|EC:2.7.4.21 molecular_function owl:Class GO:0016776 biolink:NamedThing phosphotransferase activity, phosphate group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.4.- molecular_function owl:Class GO:0102046 biolink:NamedThing 3,4-dichlorobenzoate-4,5-oxygenase activity Catalysis of the reaction: 3,4-dichlorobenzoate + O2 + a reduced electron acceptor <=> 3,4-dichlorobenzoate-cis-4,5-diol + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10427 molecular_function owl:Class GO:0016708 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and two atoms of oxygen are incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor EC:1.14.12.- molecular_function owl:Class GO:1901874 biolink:NamedThing negative regulation of post-translational protein modification Any process that stops, prevents or reduces the frequency, rate or extent of post-translational protein modification. tmpzr1t_l9r_go_relaxed.owl down-regulation of posttranslational protein modification|downregulation of post-translational amino acid modification|down regulation of posttranslational amino acid modification|inhibition of posttranslational amino acid modification|down regulation of post-translational protein modification|inhibition of posttranslational protein modification|downregulation of posttranslational protein modification|down-regulation of posttranslational amino acid modification|negative regulation of PTM|negative regulation of posttranslational amino acid modification|down regulation of post-translational modification|negative regulation of post-translational modification|inhibition of post-translational amino acid modification|downregulation of posttranslational amino acid modification|inhibition of posttranslational modification|downregulation of posttranslational modification|negative regulation of posttranslational protein modification|down-regulation of PTM|down regulation of posttranslational protein modification|negative regulation of post-translational amino acid modification|inhibition of post-translational modification|down regulation of posttranslational modification|down regulation of PTM|down-regulation of posttranslational modification|inhibition of post-translational protein modification|downregulation of PTM|downregulation of post-translational modification|inhibition of PTM|down-regulation of post-translational amino acid modification|down regulation of post-translational amino acid modification|downregulation of post-translational protein modification|down-regulation of post-translational protein modification|negative regulation of posttranslational modification|down-regulation of post-translational modification yaf 2013-02-05T10:02:57Z biological_process owl:Class GO:1901873 biolink:NamedThing regulation of post-translational protein modification Any process that modulates the frequency, rate or extent of post-translational protein modification. tmpzr1t_l9r_go_relaxed.owl regulation of post-translational modification|regulation of PTM|regulation of posttranslational protein modification|regulation of posttranslational modification|regulation of posttranslational amino acid modification|regulation of post-translational amino acid modification yaf 2013-02-05T10:02:52Z biological_process owl:Class GO:0061133 biolink:NamedThing endopeptidase activator activity Binds to and increases the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T01:08:29Z molecular_function owl:Class GO:0010906 biolink:NamedThing regulation of glucose metabolic process Any process that modulates the rate, frequency or extent of glucose metabolism. Glucose metabolic processes are the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. tmpzr1t_l9r_go_relaxed.owl regulation of glucose metabolism biological_process owl:Class GO:1901156 biolink:NamedThing neomycin metabolic process The chemical reactions and pathways involving neomycin. tmpzr1t_l9r_go_relaxed.owl neomycin metabolism yaf 2012-07-17T04:27:57Z biological_process owl:Class GO:2001209 biolink:NamedThing positive regulation of transcription elongation from RNA polymerase I promoter Any process that activates or increases the frequency, rate or extent of transcription elongation from RNA polymerase I promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of RNA elongation from Pol I promoter se 2011-11-11T10:46:41Z biological_process owl:Class GO:0032786 biolink:NamedThing positive regulation of DNA-templated transcription, elongation Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. tmpzr1t_l9r_go_relaxed.owl up-regulation of RNA elongation|stimulation of RNA elongation|activation of RNA elongation|positive regulation of transcriptional elongation|positive regulation of DNA-dependent transcription, elongation|positive regulation of transcription elongation|up regulation of RNA elongation|positive regulation of transcription elongation, DNA-dependent|upregulation of RNA elongation|positive transcription elongation regulator activity biological_process owl:Class GO:0102674 biolink:NamedThing C4-demethylase activity Catalysis of the reaction: 24-methylenelophenol + a demethylated methyl acceptor <=> 9xi-episterol + a methylated methyl acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4181 molecular_function owl:Class GO:1901686 biolink:NamedThing glutathione derivative catabolic process The chemical reactions and pathways resulting in the breakdown of glutathione derivative. tmpzr1t_l9r_go_relaxed.owl glutathione derivative degradation|glutathione derivative catabolism|glutathione derivative breakdown pr 2012-12-05T11:57:16Z biological_process owl:Class GO:0044273 biolink:NamedThing sulfur compound catabolic process The chemical reactions and pathways resulting in the breakdown of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. tmpzr1t_l9r_go_relaxed.owl sulfur compound breakdown|sulfur catabolism|sulfur compound catabolism|sulfur catabolic process|sulfur compound degradation biological_process owl:Class GO:0075249 biolink:NamedThing positive regulation of aeciospore formation Any process that activates, maintains or increases the frequency, rate or extent of aeciospore formation, a process in which a dikaryotic spore of typically a rust fungus is produced in an aecium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075248 biolink:NamedThing regulation of aeciospore formation Any process that modulates the frequency, rate or extent of aeciospore formation, a process in which a dikaryotic spore of typically a rust fungus is produced in an aecium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097218 biolink:NamedThing sieve plate A part of the cell wall of a sieve tube member that bears one or more highly specialized sieve areas. tmpzr1t_l9r_go_relaxed.owl Typical of angiosperms. Part of sieve tube member (PO:0000289). pr 2012-01-13T05:42:48Z cellular_component owl:Class GO:1990571 biolink:NamedThing meiotic centromere clustering The process by which centromeres/kinetochores attach to and migrate along microtubules to become localized to clusters at the spindle pole body during a meiotic prometaphase I. tmpzr1t_l9r_go_relaxed.owl homologous chromosome movement towards spindle pole in meiosis I prometaphase|centromere clustering during meiosis mah 2014-12-02T11:25:37Z biological_process owl:Class GO:0016344 biolink:NamedThing meiotic chromosome movement towards spindle pole The cell cycle process in which the directed movement of chromosomes from the center of the spindle towards the spindle poles takes place, mediated by the shortening of microtubules attached to the chromosomes. This occurs during meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic chromosome movement|chromosome migration to spindle pole during meiosis|chromosome movement towards spindle pole during meiosis|meiotic chromosome movement to spindle pole biological_process owl:Class GO:0043911 biolink:NamedThing D-lysine transaminase activity Catalysis of the reaction: D-lysine + 2-oxoglutarate = L-glutamate + 6-amino-2-oxohexanoate. tmpzr1t_l9r_go_relaxed.owl D-lysine aminotransferase activity molecular_function owl:Class GO:0008483 biolink:NamedThing transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl aminotransferase activity Reactome:R-HSA-1237102|EC:2.6.1.- molecular_function owl:Class GO:0036495 biolink:NamedThing negative regulation of translation initiation in response to endoplasmic reticulum stress Any process that stops, prevents, or reduces the frequency, rate or extent of translation initiation as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl negative regulation of translation initiation in response to ER stress bf 2015-02-05T10:13:38Z biological_process owl:Class GO:0060311 biolink:NamedThing negative regulation of elastin catabolic process Any process that decreases the rate, frequency or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin. tmpzr1t_l9r_go_relaxed.owl down-regulation of elastin catabolic process|negative regulation of elastin degradation|negative regulation of elastin catabolism|negative regulation of elastin breakdown biological_process owl:Class GO:1903019 biolink:NamedThing negative regulation of glycoprotein metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of glycoprotein metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of glycoprotein metabolic process|down-regulation of glycoprotein metabolism|inhibition of glycoprotein metabolic process|down regulation of glycoprotein metabolism|down-regulation of glycoprotein metabolic process|inhibition of glycoprotein metabolism|downregulation of glycoprotein metabolism|downregulation of glycoprotein metabolic process|negative regulation of glycoprotein metabolism human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) and thus the metabolism of glycoproteins, demonstrated in Figure 4A PMID:23544079, (IDA), the negative regulation term would be applied to this protein rl 2014-05-14T18:44:25Z biological_process owl:Class GO:1904324 biolink:NamedThing negative regulation of inhibitory G protein-coupled receptor phosphorylation Any process that stops, prevents or reduces the frequency, rate or extent of inhibitory G protein-coupled receptor phosphorylation. tmpzr1t_l9r_go_relaxed.owl inhibition of inhibitory G-protein coupled receptor phosphorylation|downregulation of inhibitory G-protein coupled receptor phosphorylation|down-regulation of inhibitory G-protein coupled receptor phosphorylation|negative regulation of inhibitory G-protein coupled receptor phosphorylation|down regulation of inhibitory G-protein coupled receptor phosphorylation sl 2015-06-10T19:46:43Z biological_process owl:Class GO:0020013 biolink:NamedThing modulation by symbiont of host erythrocyte aggregation Any process in which a symbiont organism modulates the frequency, rate or extent of erythrocyte aggregation in its host organism, e.g. the binding of parasite-infected erythrocytes to uninfected erythrocytes. tmpzr1t_l9r_go_relaxed.owl rosetting Wikipedia:Rosetting Please note that this term does not refer to the in vitro assay called erythrocyte rosetting. biological_process owl:Class GO:0045224 biolink:NamedThing positive regulation of CD4 production Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of CD4. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD4 anabolism|positive regulation of CD4 formation|activation of CD4 biosynthetic process|upregulation of CD4 biosynthetic process|positive regulation of CD4 biosynthesis|positive regulation of CD4 biosynthetic process|stimulation of CD4 biosynthetic process|up-regulation of CD4 biosynthetic process|up regulation of CD4 biosynthetic process|positive regulation of CD4 synthesis biological_process owl:Class GO:0045223 biolink:NamedThing regulation of CD4 production Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of CD4. tmpzr1t_l9r_go_relaxed.owl regulation of CD4 biosynthesis|regulation of CD4 synthesis|regulation of CD4 formation|regulation of CD4 anabolism|regulation of CD4 biosynthetic process biological_process owl:Class GO:0050578 biolink:NamedThing (R)-2-hydroxyacid dehydrogenase activity Catalysis of the reaction: (S)-3-sulfolactate + NAD(P)+ = 3-sulfopyruvate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl (R)-sulfolactate:NAD(P)+ oxidoreductase activity|(R)-2-hydroxyacid:NAD(P)+ oxidoreductase activity|L-sulfolactate dehydrogenase activity|(R)-sulfolactate:NAD(P)(+) oxidoreductase activity RHEA:35735|EC:1.1.1.272|MetaCyc:1.1.1.272-RXN molecular_function owl:Class GO:1902448 biolink:NamedThing positive regulation of shade avoidance Any process that activates or increases the frequency, rate or extent of shade avoidance. tmpzr1t_l9r_go_relaxed.owl upregulation of shade avoidance|activation of shade avoidance|up regulation of shade avoidance|up-regulation of shade avoidance dhl 2013-10-15T21:05:00Z biological_process owl:Class GO:0047127 biolink:NamedThing thiomorpholine-carboxylate dehydrogenase activity Catalysis of the reaction: NAD(P)+ + thiomorpholine-3-carboxylate = NAD(P)H + 3,4-dehydro-1,4-thiomorpholine-3-carboxylate. tmpzr1t_l9r_go_relaxed.owl ketimine reductase activity|thiomorpholine-3-carboxylate:NAD(P)+ 5,6-oxidoreductase activity|ketimine-reducing enzyme Reactome:R-HSA-5693347|MetaCyc:1.5.1.25-RXN|EC:1.5.1.25 molecular_function owl:Class GO:0015112 biolink:NamedThing nitrate transmembrane transporter activity Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl nitrite/nitrate porter activity https://github.com/geneontology/go-ontology/issues/21337 RHEA:34923 molecular_function owl:Class GO:0015103 biolink:NamedThing inorganic anion transmembrane transporter activity Enables the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097192 biolink:NamedThing extrinsic apoptotic signaling pathway in absence of ligand A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with withdrawal of a ligand from a cell surface receptor, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl dependence receptor signaling pathway|extrinsic apoptosis in absence of ligand|extrinsic apoptotic signalling pathway in absence of ligand For dependence receptors, absence of a ligand or withdrawal of a ligand from a receptor acts as a signal. An example of 'extrinsic apoptotic signaling pathway in absence of ligand' is withdrawal of a growth factor such as NGF, even if traditionally apoptosis induced via growth factor withdrawal has been classified as an instance of intrinsic apoptosis. See an example in PMID:19767770. Ligands whose withdrawal or absence induce apoptosis should be annotated to GO:2001239 'regulation of extrinsic apoptotic signaling pathway in absence of ligand', rather than to the pathway term itself. Examples of gene products that may be annotated to GO:0097192 'extrinsic apoptotic signaling pathway in absence of ligand' include dependence receptors such as DCC or UNC5B, which relay lethal signals in the absence of their ligand (netrin-1). In the case of DCC and UNC5B, the signaling proceeds through the assembly of a DRAL- and TUCAN- (or NLRP1-) containing caspase-9-activating complex or by the dephosphorylation-mediated activation of death-associated protein kinase 1 (DAPK1) by UNC5B-bound protein phosphatase 2A (PP2A), respectively. DAPK1 can mediate the direct activation of executioner caspases or favor MOMP (reviewed in PMID:21760595). Also see PMID:21172653 (annotations to UNC5B and PR65beta, UniProt symbols O08722, PPP2R1B and P30154). pr 2011-11-23T09:37:09Z biological_process owl:Class GO:0038034 biolink:NamedThing signal transduction in absence of ligand A series of molecular signals initiated by the absence of a ligand or the withdrawal of a ligand from a receptor. tmpzr1t_l9r_go_relaxed.owl signal transduction in absence of agonist|basal signaling|negative signal transduction|non-classical signal transduction|dependence receptor signaling pathway|addiction receptor signaling pathway bf 2011-10-26T02:21:03Z biological_process owl:Class GO:0015230 biolink:NamedThing FAD transmembrane transporter activity Enables the directed movement of flavin-adenine dinucleotide (FAD) from one side of a membrane to the other. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form. tmpzr1t_l9r_go_relaxed.owl flavin-adenine dinucleotide carrier activity|flavin adenine dinucleotide carrier activity|flavin-adenine dinucleotide transmembrane transporter activity|FAD transporter activity|FAD carrier activity|flavin adenine dinucleotide transmembrane transporter activity GO:0005472 molecular_function owl:Class GO:0015215 biolink:NamedThing nucleotide transmembrane transporter activity Enables the transfer of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009994 biolink:NamedThing oocyte differentiation The process in which a relatively unspecialized immature germ cell acquires the specialized features of a mature female gamete. tmpzr1t_l9r_go_relaxed.owl oocyte cell differentiation biological_process owl:Class GO:0022412 biolink:NamedThing cellular process involved in reproduction in multicellular organism A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl reproductive cellular process in multicellular organism biological_process owl:Class GO:0061245 biolink:NamedThing establishment or maintenance of bipolar cell polarity Any cellular process that results in the specification, formation or maintenance of a bipolar intracellular organization or cell growth patterns. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-23T09:42:05Z biological_process owl:Class GO:0007163 biolink:NamedThing establishment or maintenance of cell polarity Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns. tmpzr1t_l9r_go_relaxed.owl establishment and/or maintenance of cell polarity|establishment and/or maintenance of cell polarization|cell polarity GO:0030012|GO:0030467 biological_process owl:Class GO:0071010 biolink:NamedThing prespliceosome A spliceosomal complex that is formed by association of the 5' splice site and the branch point sequence with specific snRNPs. The prespliceosome includes many proteins in addition to those found in the bound snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. Prespliceosome complexes are not active for splicing, but are instead an early step in the assembly of a spliceosomal complex. tmpzr1t_l9r_go_relaxed.owl yeast spliceosomal complex B|prespliceosomal complex|mammalian spliceosomal complex A mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005681 biolink:NamedThing spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. tmpzr1t_l9r_go_relaxed.owl spliceosome complex|spliceosome Wikipedia:Spliceosome cellular_component owl:Class GO:0140673 biolink:NamedThing co-transcriptional chromatin reassembly The reestablishment of chromatin structure that was disrupted upon passage of RNA polymerase II during transcription elongation. This process prevents cryptic intragenic transcription initiation. tmpzr1t_l9r_go_relaxed.owl maintenance of transcriptionally active chromatin during transcription elongation|euchromatin maintenance during transcription elongation|maintainance of chromatin integrity during transcription elongation by RNAPII|chromatin maintenance during transcription elongation https://github.com/geneontology/go-ontology/issues/21730 Note: Do not confuse with 'GO:0045815 epigenetic maintenance of chromatin in transcription-competent conformation', which describes the maintenance of chromatin in an open conformation (indeendent of transcription). pg 2021-06-29T09:18:46Z biological_process owl:Class GO:0031497 biolink:NamedThing chromatin assembly The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus. tmpzr1t_l9r_go_relaxed.owl chromatin maintenance|establishment of chromatin architecture biological_process owl:Class GO:0019694 biolink:NamedThing alkanesulfonate metabolic process The chemical reactions and pathways involving alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group. tmpzr1t_l9r_go_relaxed.owl alkanesulphonate metabolic process|alkanesulphonate metabolism|alkanesulfonate metabolism MetaCyc:ALKANEMONOX-PWY biological_process owl:Class GO:0031244 biolink:NamedThing extrinsic component of cell outer membrane The component of the cell outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to cell outer membrane cellular_component owl:Class GO:2000418 biolink:NamedThing positive regulation of eosinophil migration Any process that activates or increases the frequency, rate or extent of eosinophil migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:44:14Z biological_process owl:Class GO:0002687 biolink:NamedThing positive regulation of leukocyte migration Any process that activates or increases the frequency, rate, or extent of leukocyte migration. tmpzr1t_l9r_go_relaxed.owl activation of leukocyte migration|up regulation of leukocyte migration|positive regulation of immune cell migration|upregulation of leukocyte migration|positive regulation of leucocyte migration|stimulation of leukocyte migration|up-regulation of leukocyte migration biological_process owl:Class GO:0045268 biolink:NamedThing plasma membrane proton-transporting ATP synthase, catalytic core The hexamer that possesses the catalytic activity of the plasma membrane hydrogen-transporting ATP synthase. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, catalytic core|proton-transporting ATP synthase, catalytic core cellular_component owl:Class GO:0045267 biolink:NamedThing proton-transporting ATP synthase, catalytic core The hexamer that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, catalytic core cellular_component owl:Class GO:0050457 biolink:NamedThing decylcitrate synthase activity Catalysis of the reaction: H(2)O + lauroyl-CoA + oxaloacetate = (2S,3S)-2-hydroxytridecane-1,2,3-tricarboxylate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl (2S,3S)-2-hydroxytridecane-1,2,3-tricarboxylate oxaloacetate-lyase (CoA-acylating)|(2S,3S)-2-hydroxytridecane-1,2,3-tricarboxylate oxaloacetate-lyase (CoA- acylating) activity|2-decylcitrate synthase activity|dodecanoyl-CoA:oxaloacetate C-dodecanoyltransferase (thioester-hydrolysing, 1-carboxyundecyl-forming) MetaCyc:DECYLCITRATE-SYNTHASE-RXN|KEGG_REACTION:R03735|RHEA:16605|EC:2.3.3.2 molecular_function owl:Class GO:0036008 biolink:NamedThing sucrose catabolic process to fructose-6-phosphate and glucose-6-phosphate The chemical reactions and pathways resulting in the breakdown of sucrose, which proceeds by phosphorylation of sucrose to form sucrose-6-phosphate. The subsequent actions of a hydrolase and a fructokinase generate fructose-6-phosphate and glucose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:SUCUTIL-PWY bf 2011-09-23T10:34:08Z biological_process owl:Class GO:0005987 biolink:NamedThing sucrose catabolic process The chemical reactions and pathways resulting in the breakdown of sucrose, the disaccharide fructofuranosyl-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl sucrose degradation|sucrose catabolism|sucrose breakdown biological_process owl:Class GO:0045775 biolink:NamedThing positive regulation of beta 2 integrin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta 2 integrins. tmpzr1t_l9r_go_relaxed.owl positive regulation of beta 2 integrin biosynthesis|positive regulation of beta 2 integrin anabolism|positive regulation of beta 2 integrin formation|positive regulation of beta 2 integrin synthesis|upregulation of beta 2 integrin biosynthetic process|activation of beta 2 integrin biosynthetic process|stimulation of beta 2 integrin biosynthetic process|up-regulation of beta 2 integrin biosynthetic process|up regulation of beta 2 integrin biosynthetic process biological_process owl:Class GO:0061113 biolink:NamedThing pancreas morphogenesis Morphogenesis of the pancreas. Morphogenesis is the process in which anatomical structures are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-05T11:55:30Z biological_process owl:Class GO:0007454 biolink:NamedThing labial disc morphogenesis The process in which the anatomical structures derived from the labial disc are generated and organized. This includes the transformation of a labial imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including parts of the proboscis. tmpzr1t_l9r_go_relaxed.owl labial disc metamorphosis biological_process owl:Class GO:0007560 biolink:NamedThing imaginal disc morphogenesis The process in which the anatomical structures derived from an imaginal disc are generated and organized. The imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult appendages (legs, antennae, wings, etc.) during metamorphosis from larval to adult form. tmpzr1t_l9r_go_relaxed.owl imaginal disc metamorphosis GO:0007452 biological_process owl:Class GO:1904636 biolink:NamedThing response to ionomycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ionomycin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T14:39:18Z biological_process owl:Class GO:0070542 biolink:NamedThing response to fatty acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000013 biolink:NamedThing regulation of arginine biosynthetic process via ornithine Any process that modulates the frequency, rate or extent of arginine biosynthetic process via ornithine. tmpzr1t_l9r_go_relaxed.owl regulation of arginine formation via ornithine|regulation of arginine anabolism via ornithine|regulation of arginine synthesis via ornithine tb 2010-08-05T11:21:51Z biological_process owl:Class GO:1900079 biolink:NamedThing regulation of arginine biosynthetic process Any process that modulates the frequency, rate or extent of arginine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of arginine anabolism|regulation of arginine biosynthesis|regulation of arginine synthesis|regulation of arginine formation pr 2012-02-01T03:57:36Z biological_process owl:Class GO:1902037 biolink:NamedThing negative regulation of hematopoietic stem cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of haematopoietic stem cell differentiation|downregulation of hemopoietic stem cell differentiation|inhibition of haemopoietic stem cell differentiation|downregulation of haematopoietic stem cell differentiation|negative regulation of haemopoietic stem cell differentiation|downregulation of hematopoietic stem cell differentiation|negative regulation of hemopoietic stem cell differentiation|downregulation of haemopoietic stem cell differentiation|down regulation of hemopoietic stem cell differentiation|down-regulation of hematopoietic stem cell differentiation|down-regulation of haematopoietic stem cell differentiation|down-regulation of haemopoietic stem cell differentiation|inhibition of hematopoietic stem cell differentiation|inhibition of hemopoietic stem cell differentiation|down regulation of haemopoietic stem cell differentiation|down-regulation of hemopoietic stem cell differentiation|negative regulation of haematopoietic stem cell differentiation|down regulation of hematopoietic stem cell differentiation|down regulation of haematopoietic stem cell differentiation ss 2013-04-02T05:19:14Z biological_process owl:Class GO:1902036 biolink:NamedThing regulation of hematopoietic stem cell differentiation Any process that modulates the frequency, rate or extent of hematopoietic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of hemopoietic stem cell differentiation|regulation of haemopoietic stem cell differentiation|regulation of haematopoietic stem cell differentiation ss 2013-04-02T05:19:09Z biological_process owl:Class GO:1904601 biolink:NamedThing protein localization to actin fusion focus A process in which a protein is transported to, or maintained in, a location within an actin fusion focus. tmpzr1t_l9r_go_relaxed.owl protein localisation in actin fusion focus|protein localisation to actin fusion focus|protein localization in actin fusion focus al 2015-08-26T10:36:22Z biological_process owl:Class GO:1903119 biolink:NamedThing protein localization to actin cytoskeleton A process in which a protein is transported to, or maintained in, the location of an actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl protein localization in actin cytoskeleton|protein localisation to actin cytoskeleton|protein localisation in actin cytoskeleton mah 2014-06-16T11:27:09Z biological_process owl:Class GO:1905906 biolink:NamedThing regulation of amyloid fibril formation Any process that modulates the frequency, rate or extent of amyloid fibril formation. tmpzr1t_l9r_go_relaxed.owl regulation of amyloid structure assembly|regulation of amyloid structure formation|regulation of amyloid fibril assembly Although deposition of amyloid fibrils is associated with diseases, e.g. Alzheimer's disease, amyloid formation is a normal process. Disease occurs when the balance between amyloid formation and clearance is disrupted (reviewed e.g. in PMID:29654159 and PMID:28937655). An example of a normal amyloid complex is composed of human RIP1 and RIP3 kinases (PMID:22817896). bc 2017-02-03T15:43:48Z biological_process owl:Class GO:0009650 biolink:NamedThing UV protection Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV. tmpzr1t_l9r_go_relaxed.owl ultraviolet tolerance|UV tolerance|ultraviolet resistance|UV resistance|ultraviolet protection biological_process owl:Class GO:0009411 biolink:NamedThing response to UV Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. tmpzr1t_l9r_go_relaxed.owl response to UV light stimulus|response to ultraviolet radiation stimulus|response to UV radiation stimulus|response to ultraviolet light stimulus biological_process owl:Class GO:0055004 biolink:NamedThing atrial cardiac myofibril assembly The process whose specific outcome is the progression of the atrial cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells. tmpzr1t_l9r_go_relaxed.owl atrial heart myofibril development|atrial cardiac myofibril development biological_process owl:Class GO:0055003 biolink:NamedThing cardiac myofibril assembly The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells. tmpzr1t_l9r_go_relaxed.owl cardiac myofibril development|cardiac myofibril morphogenesis|heart myofibril assembly biological_process owl:Class GO:0040013 biolink:NamedThing negative regulation of locomotion Any process that stops, prevents, or reduces the frequency, rate or extent of locomotion of a cell or organism. tmpzr1t_l9r_go_relaxed.owl inhibition of locomotion|downregulation of locomotion|down-regulation of locomotion|down regulation of locomotion biological_process owl:Class GO:0048519 biolink:NamedThing negative regulation of biological process Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. tmpzr1t_l9r_go_relaxed.owl down regulation of biological process|down-regulation of biological process|downregulation of biological process|inhibition of biological process|negative regulation of physiological process GO:0043118 biological_process owl:Class GO:0042749 biolink:NamedThing regulation of circadian sleep/wake cycle Any process that modulates the frequency, rate or extent of the circadian sleep/wake cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042752 biolink:NamedThing regulation of circadian rhythm Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903579 biolink:NamedThing negative regulation of ATP metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of ATP metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of ATP metabolic process|negative regulation of ATP metabolism|downregulation of ATP metabolic process|inhibition of ATP metabolic process|inhibition of ATP metabolism|downregulation of ATP metabolism|down-regulation of ATP metabolic process|down regulation of ATP metabolism|down-regulation of ATP metabolism sl 2014-10-30T19:04:33Z biological_process owl:Class GO:1900847 biolink:NamedThing negative regulation of naphtho-gamma-pyrone biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of naphtho-gamma-pyrone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of naphtho-gamma-pyrone biosynthetic process|down-regulation of naphtho-gamma-pyrone biosynthetic process|down regulation of naphtho-gamma-pyrone biosynthetic process|downregulation of naphtho-gamma-pyrone biosynthetic process di 2012-06-07T09:43:03Z biological_process owl:Class GO:0051489 biolink:NamedThing regulation of filopodium assembly Any process that modulates the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone. tmpzr1t_l9r_go_relaxed.owl regulation of filopodia biosynthesis|regulation of filopodium formation|regulation of filopodia formation biological_process owl:Class GO:0120032 biolink:NamedThing regulation of plasma membrane bounded cell projection assembly Any process that modulates the rate, frequency, or extent of plasma membrane bounded cell projection assembly. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-26T04:27:04Z biological_process owl:Class GO:0002218 biolink:NamedThing activation of innate immune response Any process that initiates an innate immune response. Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. Examples of this process include activation of the hypersensitive response of Arabidopsis thaliana and activation of any NOD or TLR signaling pathway in vertebrate species. tmpzr1t_l9r_go_relaxed.owl GO:0002219 biological_process owl:Class GO:0045737 biolink:NamedThing positive regulation of cyclin-dependent protein serine/threonine kinase activity Any process that activates or increases the frequency, rate or extent of CDK activity. tmpzr1t_l9r_go_relaxed.owl up regulation of cyclin-dependent protein kinase activity|upregulation of cyclin-dependent protein kinase activity|up-regulation of cyclin-dependent protein kinase activity|positive regulation of CDK activity|positive regulation of cyclin-dependent protein kinase activity|activation of cyclin-dependent protein kinase activity|stimulation of cyclin-dependent protein kinase activity biological_process owl:Class GO:1904031 biolink:NamedThing positive regulation of cyclin-dependent protein kinase activity Any process that activates or increases the frequency, rate or extent of cyclin-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of cyclin-dependent protein kinase activity|activation of cyclin-dependent protein kinase activity|up regulation of cyclin-dependent protein kinase activity|upregulation of cyclin-dependent protein kinase activity als 2015-03-13T15:43:50Z biological_process owl:Class GO:1901430 biolink:NamedThing positive regulation of syringal lignin biosynthetic process Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of syringal lignin anabolism|positive regulation of syringal lignin formation|positive regulation of syringal lignin biosynthesis|up regulation of syringal lignin formation|upregulation of syringal lignin anabolism|activation of syringal lignin biosynthesis|up regulation of syringal lignin biosynthetic process|activation of syringal lignin synthesis|up-regulation of syringal lignin biosynthesis|up regulation of syringal lignin synthesis|activation of syringal lignin biosynthetic process|up-regulation of syringal lignin synthesis|activation of syringal lignin formation|up-regulation of syringal lignin anabolism|up-regulation of S-lignin biosynthetic process|upregulation of syringal lignin formation|up regulation of syringal lignin biosynthesis|upregulation of S-lignin biosynthetic process|positive regulation of S-lignin biosynthetic process|up-regulation of syringal lignin formation|activation of S-lignin biosynthetic process|positive regulation of syringal lignin synthesis|upregulation of syringal lignin biosynthesis|positive regulation of syringal lignin anabolism|upregulation of syringal lignin synthesis|up-regulation of syringal lignin biosynthetic process|activation of syringal lignin anabolism|upregulation of syringal lignin biosynthetic process|up regulation of S-lignin biosynthetic process tb 2012-10-01T20:15:09Z biological_process owl:Class GO:0019404 biolink:NamedThing galactitol catabolic process The chemical reactions and pathways resulting in the breakdown of galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose. tmpzr1t_l9r_go_relaxed.owl galactitol degradation|galactitol catabolism|galactitol breakdown MetaCyc:GALACTITOLCAT-PWY biological_process owl:Class GO:0019407 biolink:NamedThing hexitol catabolic process The chemical reactions and pathways resulting in the breakdown of hexitols, any alditol with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexitol degradation|hexitol catabolism|hexitol breakdown biological_process owl:Class GO:0060218 biolink:NamedThing hematopoietic stem cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a hematopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. tmpzr1t_l9r_go_relaxed.owl haematopoietic stem cell differentiation|haemopoietic stem cell differentiation|hemopoietic stem cell differentiation biological_process owl:Class GO:0002244 biolink:NamedThing hematopoietic progenitor cell differentiation The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells. tmpzr1t_l9r_go_relaxed.owl haemopoietic progenitor cell differentiation|hemopoietic progenitor cell differentiation|haematopoietic progenitor cell differentiation biological_process owl:Class GO:0031355 biolink:NamedThing integral component of plastid outer membrane The component of the plastid outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to plastid outer membrane cellular_component owl:Class GO:0016021 biolink:NamedThing integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to membrane|transmembrane Wikipedia:Transmembrane_protein cellular_component owl:Class GO:0070760 biolink:NamedThing positive regulation of interleukin-35-mediated signaling pathway Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-35 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-35-mediated signaling pathway|positive regulation of interleukin-35-mediated signalling pathway mah 2009-06-23T02:06:16Z biological_process owl:Class GO:0001934 biolink:NamedThing positive regulation of protein phosphorylation Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein amino acid phosphorylation|upregulation of protein amino acid phosphorylation|up regulation of protein amino acid phosphorylation|positive regulation of protein amino acid phosphorylation|stimulation of protein amino acid phosphorylation|activation of protein amino acid phosphorylation biological_process owl:Class GO:0061415 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source A transcription regulation process in which the presence of a nonfermentable carbon source leads to a decrease of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T11:33:08Z biological_process owl:Class GO:0000437 biolink:NamedThing carbon catabolite repression of transcription from RNA polymerase II promoter A transcription regulation process in which the presence of one carbon source leads to a decrease in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter by carbon catabolites biological_process owl:Class GO:0031283 biolink:NamedThing negative regulation of guanylate cyclase activity Any process that stops, prevents, or reduces the frequency, rate or extent of guanylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of guanylate cyclase activity|downregulation of guanylate cyclase activity|inhibition of guanylate cyclase activity|down regulation of guanylate cyclase activity biological_process owl:Class GO:0031280 biolink:NamedThing negative regulation of cyclase activity Any process that stops or reduces the activity of a cyclase. tmpzr1t_l9r_go_relaxed.owl down regulation of cyclase activity|inhibition of cyclase activity|downregulation of cyclase activity|down-regulation of cyclase activity biological_process owl:Class GO:0060891 biolink:NamedThing limb granular cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal granular cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:33:14Z biological_process owl:Class GO:0030216 biolink:NamedThing keratinocyte differentiation The process in which a relatively unspecialized cell acquires specialized features of a keratinocyte. tmpzr1t_l9r_go_relaxed.owl keratinocyte cell differentiation biological_process owl:Class GO:0015035 biolink:NamedThing protein-disulfide reductase activity Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. tmpzr1t_l9r_go_relaxed.owl protein disulfide oxidoreductase activity|haem lyase disulphide oxidoreductase activity|peptide disulfide oxidoreductase activity|peptide disulphide oxidoreductase activity|protein disulfide-oxidoreductase activity|protein disulphide oxidoreductase activity|heme lyase disulfide oxidoreductase activity https://github.com/geneontology/go-ontology/issues/20219 Reactome:R-HSA-3299753|MetaCyc:DISULFOXRED-RXN|Reactome:R-HSA-1307802 GO:0008895|GO:0015037 molecular_function owl:Class GO:0001222 biolink:NamedThing transcription corepressor binding Binding to a transcription corepressor, a protein involved in negative regulation of transcription via protein-protein interactions with transcription factors and other proteins that negatively regulate transcription. Transcription corepressors do not bind DNA directly, but rather mediate protein-protein interactions between repressing transcription factors and the basal transcription machinery. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription corepressor binding https://github.com/geneontology/go-ontology/issues/19354 krc 2012-04-16T03:27:26Z GO:0001226 molecular_function owl:Class GO:0001221 biolink:NamedThing transcription coregulator binding Binding to a transcription coregulator, a protein involved in regulation of transcription via protein-protein interactions with transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription coregulator binding|RNA polymerase II transcription cofactor binding|transcription cofactor binding https://github.com/geneontology/go-ontology/issues/19354 krc 2012-04-16T03:19:05Z GO:0001224 molecular_function owl:Class GO:0003258 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in endocardial precursor cell differentiation Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of an endocardial precursor cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T01:10:34Z biological_process owl:Class GO:1901213 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in heart development Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the development of the heart over time. tmpzr1t_l9r_go_relaxed.owl regulation of global transcription from Pol II promoter involved in dorsal vessel development|regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|regulation of transcription from RNA polymerase II promoter, global involved in heart development|regulation of transcription from Pol II promoter involved in heart development|regulation of transcription from RNA polymerase II promoter involved in cardiac development|regulation of transcription from Pol II promoter involved in cardiac development|regulation of global transcription from Pol II promoter involved in cardiac development|regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|global transcription regulation from Pol II promoter involved in heart development|regulation of transcription from Pol II promoter involved in dorsal vessel development|regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|regulation of global transcription from Pol II promoter involved in heart development|global transcription regulation from Pol II promoter involved in cardiac development|regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|global transcription regulation from Pol II promoter involved in dorsal vessel development rl 2012-07-31T07:26:45Z biological_process owl:Class GO:0032502 biolink:NamedThing developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. tmpzr1t_l9r_go_relaxed.owl single-organism developmental process|development jl 2012-12-19T12:21:31Z GO:0044767 biological_process owl:Class GO:0071295 biolink:NamedThing cellular response to vitamin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:27:24Z biological_process owl:Class GO:0031670 biolink:NamedThing cellular response to nutrient Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032092 biolink:NamedThing positive regulation of protein binding Any process that activates or increases the frequency, rate or extent of protein binding. tmpzr1t_l9r_go_relaxed.owl upregulation of protein binding|up-regulation of protein binding|activation of protein binding|stimulation of protein binding|up regulation of protein binding biological_process owl:Class GO:0043393 biolink:NamedThing regulation of protein binding Any process that modulates the frequency, rate or extent of protein binding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034923 biolink:NamedThing phenanthrene-4,5-dicarboxylate decarboxylase activity Catalysis of the reaction: phenanthrene-4,5-dicarboxylate + H+ = phenanthrene-4-carboxylate + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0937 molecular_function owl:Class GO:0016463 biolink:NamedThing P-type zinc transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(in) -> ADP + phosphate + Zn2+(out). tmpzr1t_l9r_go_relaxed.owl zinc exporting ATPase activity|zinc-translocating P-type ATPase activity|Zn(2+)-exporting ATPase activity|Zn2+-exporting ATPase activity|zinc-exporting ATPase activity|ATP phosphohydrolase (Zn2+-exporting)|P1B-type ATPase activity|P(1B)-type ATPase activity|zinc transmembrane transporter activity, phosphorylative mechanism RHEA:20621|MetaCyc:3.6.3.5-RXN|EC:7.2.2.12 molecular_function owl:Class GO:0015662 biolink:NamedThing P-type ion transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity|P-type ATPase activity|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|ion transmembrane transporter activity, phosphorylative mechanism https://github.com/geneontology/go-ontology/issues/17164 Reactome:R-HSA-429157 molecular_function owl:Class GO:0000054 biolink:NamedThing ribosomal subunit export from nucleus The directed movement of a ribosomal subunit from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl ribosomal subunit export from cell nucleus|ribosome export from nucleus|ribosomal subunit export out of nucleus|ribosomal subunit transport from nucleus to cytoplasm|ribosomal subunit-nucleus export biological_process owl:Class GO:0031503 biolink:NamedThing protein-containing complex localization A localization process that acts on a protein complex; the complex is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of cellular protein complex localization|protein complex localisation|cellular protein complex localisation|establishment and maintenance of protein complex localization|protein complex localization|cellular protein-containing complex localization|cellular protein complex localization https://github.com/geneontology/go-ontology/issues/22021 GO:0034629 biological_process owl:Class GO:0050922 biolink:NamedThing negative regulation of chemotaxis Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient. tmpzr1t_l9r_go_relaxed.owl inhibition of chemotaxis|down-regulation of chemotaxis|downregulation of chemotaxis|down regulation of chemotaxis biological_process owl:Class GO:0031101 biolink:NamedThing fin regeneration The regrowth of fin tissue following its loss or destruction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901972 biolink:NamedThing positive regulation of DNA-5-methylcytosine glycosylase activity Any process that activates or increases the frequency, rate or extent of DNA-5-methylcytosine glycosylase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of DNA-5-methylcytosine glycosylase activity|up-regulation of DNA-5-methylcytosine glycosylase activity|up regulation of DNA-5-methylcytosine glycosylase activity|activation of DNA-5-methylcytosine glycosylase activity tb 2013-02-25T20:01:34Z biological_process owl:Class GO:1901971 biolink:NamedThing regulation of DNA-5-methylcytosine glycosylase activity Any process that modulates the frequency, rate or extent of DNA-5-methylcytosine glycosylase activity. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-25T20:01:29Z biological_process owl:Class GO:0047484 biolink:NamedThing regulation of response to osmotic stress Any process that modulates the rate or extent of the response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099528 biolink:NamedThing G protein-coupled neurotransmitter receptor activity Combining with a neurotransmitter and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled neurotransmitter receptor activity molecular_function owl:Class GO:0030594 biolink:NamedThing neurotransmitter receptor activity Combining with a neurotransmitter and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl A strict definition of neurotransmitter receptor activity would limit its use to receptor activity at the postsynaptic membrane as part of synaptic transmission, but we recognize that usage is often much broader than this. For the strict use case, please see 'postsynaptic neurotransmitter receptor activity' molecular_function owl:Class GO:0061889 biolink:NamedThing negative regulation of astrocyte activation Any process that decreases the frequency, rate or extent of astrocyte activation. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-01T22:29:43Z biological_process owl:Class GO:0050866 biolink:NamedThing negative regulation of cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of cell activation. tmpzr1t_l9r_go_relaxed.owl downregulation of cell activation|down regulation of cell activation|down-regulation of cell activation|inhibition of cell activation biological_process owl:Class GO:1901248 biolink:NamedThing positive regulation of lung ciliated cell differentiation Any process that activates or increases the frequency, rate or extent of lung ciliated cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of lung ciliated cell differentiation|upregulation of lung ciliated cell differentiation|up-regulation of lung ciliated cell differentiation|activation of lung ciliated cell differentiation vk 2012-08-08T08:59:05Z biological_process owl:Class GO:0001805 biolink:NamedThing positive regulation of type III hypersensitivity Any process that activates or increases the frequency, rate or extent of type III hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl stimulation of type III hypersensitivity|upregulation of type III hypersensitivity|activation of type III hypersensitivity|up-regulation of type III hypersensitivity|up regulation of type III hypersensitivity biological_process owl:Class GO:2000559 biolink:NamedThing regulation of CD24 production Any process that modulates the frequency, rate or extent of CD24 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of CD24 formation|regulation of CD24 biosynthesis|regulation of CD24 anabolism|regulation of CD24 synthesis|regulation of CD24 biosynthetic process ebc 2011-04-03T08:56:56Z biological_process owl:Class GO:0010559 biolink:NamedThing regulation of glycoprotein biosynthetic process Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905765 biolink:NamedThing negative regulation of protection from non-homologous end joining at telomere Any process that stops, prevents or reduces the frequency, rate or extent of protection from non-homologous end joining at telomere. tmpzr1t_l9r_go_relaxed.owl inhibition of protection from NHEJ-mediated telomere fusion|down regulation of protection from NHEJ-mediated telomere fusion|inhibition of protection from non-homologous end joining at telomere|down regulation of protection from non-homologous end joining at telomere|negative regulation of protection from NHEJ-mediated telomere fusion|down-regulation of protection from non-homologous end joining at telomere|downregulation of protection from non-homologous end joining at telomere|down-regulation of protection from NHEJ-mediated telomere fusion|downregulation of protection from NHEJ-mediated telomere fusion nc 2016-12-20T11:28:30Z biological_process owl:Class GO:0006879 biolink:NamedThing cellular iron ion homeostasis Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl iron homeostasis biological_process owl:Class GO:0055072 biolink:NamedThing iron ion homeostasis Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl iron homeostasis biological_process owl:Class GO:1900328 biolink:NamedThing negative regulation of mannotriose transport Any process that stops, prevents or reduces the frequency, rate or extent of mannotriose transport. tmpzr1t_l9r_go_relaxed.owl down regulation of mannotriose transport|downregulation of mannotriose transport|down-regulation of mannotriose transport|inhibition of mannotriose transport tt 2012-04-06T01:50:13Z biological_process owl:Class GO:1900327 biolink:NamedThing regulation of mannotriose transport Any process that modulates the frequency, rate or extent of mannotriose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:50:05Z biological_process owl:Class GO:1900721 biolink:NamedThing positive regulation of uterine smooth muscle relaxation Any process that activates or increases the frequency, rate or extent of uterine smooth muscle relaxation. tmpzr1t_l9r_go_relaxed.owl positive regulation of smooth muscle relaxation of the uterus|up regulation of uterine smooth muscle relaxation|up-regulation of smooth muscle relaxation of the uterus|up regulation of smooth muscle relaxation of the uterus|upregulation of uterine smooth muscle relaxation|activation of smooth muscle relaxation of the uterus|activation of uterine smooth muscle relaxation|up-regulation of uterine smooth muscle relaxation|upregulation of smooth muscle relaxation of the uterus jl 2012-05-24T03:12:57Z biological_process owl:Class GO:0046223 biolink:NamedThing aflatoxin catabolic process The chemical reactions and pathways resulting in the breakdown of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450. tmpzr1t_l9r_go_relaxed.owl aflatoxin degradation|aflatoxin catabolism|aflatoxin breakdown biological_process owl:Class GO:0043387 biolink:NamedThing mycotoxin catabolic process The chemical reactions and pathways resulting in the breakdown of a mycotoxin, any poisonous substance produced by a fungus. tmpzr1t_l9r_go_relaxed.owl mycotoxin degradation|mycotoxin catabolism|mycotoxin breakdown biological_process owl:Class GO:0046641 biolink:NamedThing positive regulation of alpha-beta T cell proliferation Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of alpha-beta T-cell proliferation|upregulation of alpha-beta T cell proliferation|stimulation of alpha-beta T cell proliferation|up-regulation of alpha-beta T cell proliferation|up regulation of alpha-beta T cell proliferation|activation of alpha-beta T cell proliferation|positive regulation of alpha-beta T lymphocyte proliferation|positive regulation of alpha-beta T-lymphocyte proliferation biological_process owl:Class GO:0046635 biolink:NamedThing positive regulation of alpha-beta T cell activation Any process that activates or increases the frequency, rate or extent of alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl activation of alpha-beta T cell activation|positive regulation of alpha-beta T lymphocyte activation|upregulation of alpha-beta T cell activation|positive regulation of alpha-beta T-lymphocyte activation|up-regulation of alpha-beta T cell activation|positive regulation of alpha-beta T-cell activation|up regulation of alpha-beta T cell activation|stimulation of alpha-beta T cell activation biological_process owl:Class GO:1990329 biolink:NamedThing IscS-TusA complex A heterotetrameric protein complex involved in the sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm5s2U) at tRNA wobble positions. In E. coli it consists of a central IscS dimer with the two TusA protomers bound to one of the IscS units each via persulfide (-SSH) groups. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-17T10:00:47Z cellular_component owl:Class GO:1990221 biolink:NamedThing L-cysteine desulfurase complex A protein complex capable of cysteine desulfurase activity decomposing L-cysteine to L-alanine and sulfur. It belongs to a ubiquitous family of pyridoxal 5-phosphate (PLP)-dependent enzymes. In E. coli it consists of a SufS dimer. tmpzr1t_l9r_go_relaxed.owl NifS|SufS complex|IscS bhm 2013-10-11T15:36:34Z cellular_component owl:Class GO:1900025 biolink:NamedThing negative regulation of substrate adhesion-dependent cell spreading Any process that stops, prevents or reduces the frequency, rate or extent of substrate adhesion-dependent cell spreading. tmpzr1t_l9r_go_relaxed.owl down regulation of substrate adhesion-dependent cell spreading|negative regulation of substrate adhesion dependent cell spreading|down regulation of cell spreading during cell substrate adhesion|negative regulation of cell spreading during cell substrate adhesion|down regulation of substrate adhesion dependent cell spreading yaf 2012-01-12T05:00:43Z biological_process owl:Class GO:0010771 biolink:NamedThing negative regulation of cell morphogenesis involved in differentiation Any process that decreases the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000888 biolink:NamedThing arabinoxylan-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of an arabinoxylan. tmpzr1t_l9r_go_relaxed.owl arabinoxylan catabolic process|arabinoxylan catabolism jl 2011-07-28T09:31:50Z biological_process owl:Class GO:0045493 biolink:NamedThing xylan catabolic process The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. tmpzr1t_l9r_go_relaxed.owl xylan degradation|xylan breakdown|xylan catabolism biological_process owl:Class GO:0004072 biolink:NamedThing aspartate kinase activity Catalysis of the reaction: L-aspartate + ATP = 4-phospho-L-aspartate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:L-aspartate 4-phosphotransferase activity|aspartic kinase activity|aspartokinase activity|beta-aspartokinase activity EC:2.7.2.4|RHEA:23776|KEGG_REACTION:R00480|MetaCyc:ASPARTATEKIN-RXN molecular_function owl:Class GO:0019202 biolink:NamedThing amino acid kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to an amino acid substrate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032373 biolink:NamedThing positive regulation of sterol transport Any process that activates or increases the frequency, rate or extent of the directed movement of sterols into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of sterol transport|up-regulation of sterol transport|activation of sterol transport|up regulation of sterol transport|upregulation of sterol transport biological_process owl:Class GO:0032370 biolink:NamedThing positive regulation of lipid transport Any process that activates or increases the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl activation of lipid transport|stimulation of lipid transport|upregulation of lipid transport|up regulation of lipid transport|up-regulation of lipid transport biological_process owl:Class GO:0019621 biolink:NamedThing creatinine catabolic process to formate The chemical reactions and pathways resulting in the breakdown of creatinine into other compounds, including formate. tmpzr1t_l9r_go_relaxed.owl creatinine degradation to formate|creatinine breakdown to formate MetaCyc:CRNFORCAT-PWY biological_process owl:Class GO:0006602 biolink:NamedThing creatinine catabolic process The chemical reactions and pathways resulting in the breakdown of creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine. tmpzr1t_l9r_go_relaxed.owl creatinine degradation|creatinine catabolism|creatinine breakdown biological_process owl:Class GO:1901666 biolink:NamedThing positive regulation of NAD+ ADP-ribosyltransferase activity Any process that activates or increases the frequency, rate or extent of NAD+ ADP-ribosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl activation of ADP-ribosyltransferase (polymerizing) activity|positive regulation of poly(ADP-ribose)polymerase activity|activation of poly(ADP-ribose)polymerase activity|up-regulation of NAD+ ADP-ribosyltransferase activity|up-regulation of ADP-ribosyltransferase (polymerizing) activity|activation of NAD+ ADP-ribosyltransferase activity|activation of poly(ADP-ribose) synthetase activity|upregulation of ADP-ribosyltransferase (polymerizing) activity|positive regulation of poly(ADP-ribose) synthase activity|up regulation of NAD+ ADP-ribosyltransferase activity|upregulation of poly(ADP-ribose) synthetase activity|activation of poly(ADP-ribose) synthase activity|positive regulation of ADP-ribosyltransferase (polymerizing) activity|up-regulation of poly(adenosine diphosphate ribose) polymerase activity|positive regulation of NAD ADP-ribosyltransferase activity|up regulation of ADP-ribosyltransferase (polymerizing) activity|up regulation of poly(ADP-ribose) synthase activity|up-regulation of NAD ADP-ribosyltransferase activity|up-regulation of poly(ADP-ribose) synthase activity|up regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|positive regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|up regulation of poly(ADP-ribose)polymerase activity|positive regulation of poly(adenosine diphosphate ribose) polymerase activity|up-regulation of poly(ADP-ribose)polymerase activity|up-regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|upregulation of poly(ADP-ribose) synthase activity|positive regulation of poly(ADP-ribose) synthetase activity|activation of poly(adenosine diphosphate ribose) polymerase activity|activation of NAD ADP-ribosyltransferase activity|upregulation of NAD+ ADP-ribosyltransferase activity|up regulation of poly(adenosine diphosphate ribose) polymerase activity|activation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|upregulation of poly(adenosine diphosphate ribose) polymerase activity|up regulation of NAD ADP-ribosyltransferase activity|up regulation of poly(ADP-ribose) synthetase activity|upregulation of poly(ADP-ribose)polymerase activity|upregulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|upregulation of NAD ADP-ribosyltransferase activity|up-regulation of poly(ADP-ribose) synthetase activity vk 2012-11-20T18:50:20Z biological_process owl:Class GO:1990748 biolink:NamedThing cellular detoxification Any process carried out at the cellular level that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance. tmpzr1t_l9r_go_relaxed.owl vw 2015-05-18T16:17:46Z biological_process owl:Class GO:0051737 biolink:NamedThing GTP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity Catalysis of the reaction: GTP + 5'-dephospho-DNA = GDP + 5'-phospho-DNA. tmpzr1t_l9r_go_relaxed.owl GTP-dependent DNA kinase activity|GTP-dependent polydeoxyribonucleotide kinase activity|GTP-dependent polynucleotide 5'-hydroxyl-kinase activity|GTP-dependent DNA 5'-hydroxyl-kinase activity|GTP:5'-dephosphopolydeoxyribonucleotide 5'-phosphotransferase activity molecular_function owl:Class GO:0051735 biolink:NamedThing GTP-dependent polynucleotide kinase activity Catalysis of the reaction: GTP + 5'-dephosphopolynucleotide = GDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA. tmpzr1t_l9r_go_relaxed.owl GTP:5'-dephosphopolynucleotide 5'-phosphotransferase activity|GTP-dependent polynucleotide 5'-hydroxyl-kinase activity molecular_function owl:Class GO:0086056 biolink:NamedThing voltage-gated calcium channel activity involved in AV node cell action potential Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an AV node cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated calcium channel activity involved in atrioventricular node cardiac muscle cell action potential|voltage-gated calcium channel activity involved in AV node cardiac muscle cell action potential dph 2011-11-17T12:24:22Z molecular_function owl:Class GO:0086007 biolink:NamedThing voltage-gated calcium channel activity involved in cardiac muscle cell action potential Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:04:42Z molecular_function owl:Class GO:1990572 biolink:NamedThing TERT-RMRP complex A ribonucleoprotein complex that has RNA-directed RNA polymerase (RdRP) activity, and is composed of telomerase reverse transcriptase (TERT) and the non-coding RNA component of mitochondrial RNA processing endoribonuclease (RMRP). tmpzr1t_l9r_go_relaxed.owl telomerase reverse transcriptase:RMRP RNA complex bf 2014-12-02T11:29:12Z cellular_component owl:Class GO:0031379 biolink:NamedThing RNA-directed RNA polymerase complex A protein complex that possesses RNA-directed RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021828 biolink:NamedThing gonadotrophin-releasing hormone neuronal migration to the hypothalamus The directional movement of a gonadotrophin-releasing hormone producing neuron from the nasal placode to the hypothalamus. tmpzr1t_l9r_go_relaxed.owl gonadotropin-releasing hormone neuronal migration to the hypothalamus GO:0021857 biological_process owl:Class GO:0001764 biolink:NamedThing neuron migration The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature. tmpzr1t_l9r_go_relaxed.owl neuron chemotaxis|neuronal migration|neuron guidance Wikipedia:Neural_development#Neuron_migration|Wikipedia:Neuron_migration biological_process owl:Class GO:2000676 biolink:NamedThing positive regulation of type B pancreatic cell apoptotic process Any process that activates or increases the frequency, rate or extent of type B pancreatic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of pancreatic B cell apoptosis|positive regulation of type B pancreatic cell apoptosis|positive regulation of pancreatic beta cell apoptosis pr 2011-05-09T11:51:15Z biological_process owl:Class GO:1904037 biolink:NamedThing positive regulation of epithelial cell apoptotic process Any process that activates or increases the frequency, rate or extent of epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up regulation of epithelial cell apoptosis|upregulation of epithelial cell apoptotic process|positive regulation of epitheliocyte apoptosis|activation of epitheliocyte apoptosis|up-regulation of epitheliocyte apoptosis|up-regulation of epitheliocyte apoptotic process|activation of epitheliocyte apoptotic process|activation of epithelial cell apoptotic process|up regulation of epitheliocyte apoptosis|up-regulation of epithelial cell apoptotic process|upregulation of epitheliocyte apoptotic process|upregulation of epithelial cell apoptosis|upregulation of epitheliocyte apoptosis|positive regulation of epithelial cell apoptosis|positive regulation of epitheliocyte apoptotic process|up regulation of epithelial cell apoptotic process|up regulation of epitheliocyte apoptotic process|activation of epithelial cell apoptosis|up-regulation of epithelial cell apoptosis sl 2015-03-13T22:05:53Z biological_process owl:Class GO:0106348 biolink:NamedThing U2 snRNA adenosine m6 methytransferase activity Catalysis of the reaction: a adenosine in U2 snRNA + S-adenosyl-L-methionine = an N6-methyl-adenosine in U2 snRNA + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl hjd 2020-12-18T15:12:57Z molecular_function owl:Class GO:0106346 biolink:NamedThing snRNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl hjd 2020-12-18T15:06:44Z molecular_function owl:Class GO:0061852 biolink:NamedThing retrograte transporter complex, Golgi to ER Transporter complex that recognises, binds and returns endoplasmic reticulum (ER) resident proteins that have trafficked to Golgi compartments. Targets proteins lacking the HDEL motif recognised by COPI-coated vesicles. tmpzr1t_l9r_go_relaxed.owl retrograte receptor complex, Golgi to ER|retrograte transporter complex, Golgi to endoplasmic reticulum|ERV41-ERV46 retrograde receptor complex|retrograte receptor complex, Golgi to endoplasmic reticulum An example of this is ERV41 in Saccharomyces cerevisiae (Q04651) in PMID:16093310 (inferred from direct assay). dph 2017-02-28T13:56:56Z cellular_component owl:Class GO:1990351 biolink:NamedThing transporter complex A protein complex facilitating transport of molecules (proteins, small molecules, nucleic acids) into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl An example of this is GTR1 in human (UniProt symbol P11166) in PMID:15449578 (inferred from direct assay). bhm 2014-03-26T14:23:27Z cellular_component owl:Class GO:0001991 biolink:NamedThing regulation of systemic arterial blood pressure by circulatory renin-angiotensin The process in which angiotensinogen metabolites in the bloodstream modulate the force with which blood passes through the circulatory system. The process begins when renin is released and cleaves angiotensinogen. tmpzr1t_l9r_go_relaxed.owl circulatory renin-angiotensin control of blood pressure|control of blood pressure by circulatory renin-angiotensin|circulatory renin-angiotensin regulation of blood pressure|circulatory renin-angiotensin blood pressure regulation|renin-angiotensin blood pressure control biological_process owl:Class GO:0003081 biolink:NamedThing regulation of systemic arterial blood pressure by renin-angiotensin The process in which renin-angiotensin modulates the force with which blood passes through the circulatory system. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by renin-angiotensin biological_process owl:Class GO:0032725 biolink:NamedThing positive regulation of granulocyte macrophage colony-stimulating factor production Any process that activates or increases the frequency, rate, or extent of granulocyte macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl upregulation of granulocyte macrophage colony-stimulating factor production|activation of granulocyte macrophage colony-stimulating factor production|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of granulocyte macrophage colony stimulating factor production|up regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of GM-CSF production|up-regulation of granulocyte macrophage colony-stimulating factor production|stimulation of granulocyte macrophage colony-stimulating factor production GO:0045425 biological_process owl:Class GO:0032645 biolink:NamedThing regulation of granulocyte macrophage colony-stimulating factor production Any process that modulates the frequency, rate, or extent of granulocyte macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|regulation of granulocyte macrophage colony stimulating factor production|regulation of GM-CSF production GO:0045423 biological_process owl:Class GO:0106278 biolink:NamedThing regulation of UDP-N-acetylglucosamine biosynthetic process Any process that modulates the frequency, rate or extent of the UDP-N_acetylglucosamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of UDP-GlcNAc biosynthetic process|regulation of UDP-N-acetylglucosamine synthesis|regulation of UDP-N-acetylglucosamine biosynthesis|regulation of UDP-N-acetylglucosamine anabolism|regulation of UDP-N-acetylglucosamine formation hjd 2020-07-09T17:20:49Z biological_process owl:Class GO:2001172 biolink:NamedThing positive regulation of glycolytic fermentation to ethanol Any process that activates or increases the frequency, rate or extent of glucose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl positive regulation of ethanol fermentation|positive regulation of glucose fermentation to ethanol mcc 2011-10-27T02:39:09Z biological_process owl:Class GO:0010853 biolink:NamedThing cyclase activator activity Increases the activity of an enzyme that catalyzes a ring closure reaction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097358 biolink:NamedThing D-leucyl-tRNA(Leu) deacylase activity Catalysis of the reaction: D-leucyl-tRNA(Leu) = D-leucine + tRNA(Leu). Hydrolysis of the removal of D-leucine from residues in charged tRNA(Leu). tmpzr1t_l9r_go_relaxed.owl pr 2012-07-04T09:18:12Z molecular_function owl:Class GO:0051499 biolink:NamedThing D-aminoacyl-tRNA deacylase activity Catalysis of the reaction: D-aminoacyl-tRNA = D-amino acid + tRNA. Hydrolysis of the removal of D-amino acids from residues in charged tRNA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15041|EC:3.1.1.96|RHEA:13953 molecular_function owl:Class GO:1901771 biolink:NamedThing daunorubicin biosynthetic process The chemical reactions and pathways resulting in the formation of daunorubicin. tmpzr1t_l9r_go_relaxed.owl daunorubicin synthesis|daunorubicin biosynthesis|daunorubicin formation|daunorubicin anabolism yaf 2013-01-15T10:14:33Z biological_process owl:Class GO:1901663 biolink:NamedThing quinone biosynthetic process The chemical reactions and pathways resulting in the formation of quinone. tmpzr1t_l9r_go_relaxed.owl quinone cofactor formation|quinone cofactor anabolism|quinone anabolism|quinone biosynthesis|quinone cofactor synthesis|quinone synthesis|quinone cofactor biosynthesis|quinone formation|quinone cofactor biosynthetic process pr 2012-11-20T14:44:48Z GO:0045426 biological_process owl:Class GO:0043766 biolink:NamedThing Sep-tRNA:Cys-tRNA synthase activity Catalysis of the reaction: O-phospho-L-seryl-tRNACys + sulfide = L-cysteinyl-tRNACys + phosphate. tmpzr1t_l9r_go_relaxed.owl SepCysS|O-phosphoseryl-tRNA:cysteinyl-tRNA synthase activity|Sep-tRNA:Cys-tRNA synthetase activity EC:2.5.1.73|MetaCyc:RXN-10719|RHEA:25686 molecular_function owl:Class GO:0090616 biolink:NamedThing mitochondrial mRNA 3'-end processing Any process involved in forming the mature 3' end of an mRNA molecule that derives from the mitochondrial genome. tmpzr1t_l9r_go_relaxed.owl tb 2014-10-24T12:45:08Z biological_process owl:Class GO:0046392 biolink:NamedThing galactarate catabolic process The chemical reactions and pathways resulting in the breakdown of galactarate, the anion of galactaric acid. tmpzr1t_l9r_go_relaxed.owl D-galactarate degradation|D-galactarate catabolism|galactarate catabolism|D-galactarate breakdown|D-galactarate catabolic process|galactarate degradation|galactarate breakdown MetaCyc:GALACTARDEG-PWY GO:0019582 biological_process owl:Class GO:0019580 biolink:NamedThing galactarate metabolic process The chemical reactions and pathways involving galactarate, an anion of galactaric acid, the meso-aldaric acid derived from both D- and L-galactose. tmpzr1t_l9r_go_relaxed.owl galactarate metabolism|D-galactarate metabolic process|mucic acid metabolism|D-galactarate metabolism|mucic acid metabolic process GO:0046393 biological_process owl:Class GO:0003724 biolink:NamedThing RNA helicase activity Unwinding of an RNA helix, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 EC:3.6.4.13|MetaCyc:ADENOSINETRIPHOSPHATASE-RXN|Reactome:R-HSA-72647 GO:0004004 molecular_function owl:Class GO:0008186 biolink:NamedThing ATP-dependent activity, acting on RNA Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction. tmpzr1t_l9r_go_relaxed.owl ATPase activity, acting on RNA|ATPase, acting on RNA|RNA-dependent adenosinetriphosphatase activity|RNA-dependent ATPase activity https://github.com/geneontology/go-ontology/issues/21775|https://github.com/geneontology/go-ontology/issues/20876 GO:0004010 molecular_function owl:Class GO:1905694 biolink:NamedThing negative regulation of phosphatidic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of phosphatidic acid anabolism|inhibition of phosphatidic acid formation|down-regulation of phosphatidic acid biosynthetic process|negative regulation of phosphatidic acid formation|inhibition of phosphatidic acid biosynthesis|downregulation of phosphatidic acid anabolism|negative regulation of phosphatidic acid biosynthesis|negative regulation of phosphatidic acid synthesis|down-regulation of phosphatidic acid formation|down regulation of phosphatidic acid anabolism|down regulation of phosphatidic acid biosynthesis|down-regulation of phosphatidic acid anabolism|down regulation of phosphatidic acid formation|downregulation of phosphatidic acid biosynthesis|down regulation of phosphatidic acid biosynthetic process|inhibition of phosphatidic acid anabolism|down regulation of phosphatidic acid synthesis|down-regulation of phosphatidic acid synthesis|downregulation of phosphatidic acid biosynthetic process|inhibition of phosphatidic acid biosynthetic process|inhibition of phosphatidic acid synthesis|down-regulation of phosphatidic acid biosynthesis|downregulation of phosphatidic acid synthesis|downregulation of phosphatidic acid formation bc 2016-11-14T14:48:16Z biological_process owl:Class GO:1905693 biolink:NamedThing regulation of phosphatidic acid biosynthetic process Any process that modulates the frequency, rate or extent of phosphatidic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidic acid synthesis|regulation of phosphatidic acid formation|regulation of phosphatidic acid biosynthesis|regulation of phosphatidic acid anabolism bc 2016-11-14T14:48:09Z biological_process owl:Class GO:1903062 biolink:NamedThing regulation of reverse cholesterol transport Any process that modulates the frequency, rate or extent of reverse cholesterol transport. tmpzr1t_l9r_go_relaxed.owl rl 2014-05-28T15:15:27Z biological_process owl:Class GO:0003370 biolink:NamedThing cell-cell adhesion involved in mesendodermal cell migration The attachment of mesendodermal cells to each other that contributes to the establishment of cell polarity that is part of the directed movement of the cells of the mesendoderm. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:33:51Z biological_process owl:Class GO:0070586 biolink:NamedThing cell-cell adhesion involved in gastrulation The attachment of one cell to another cell affecting gastrulation. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-24T02:48:23Z biological_process owl:Class GO:0086084 biolink:NamedThing cell adhesive protein binding involved in Purkinje myocyte-ventricular cardiac muscle cell communication Binding to a protein or protein complex that results in the connection of a Purkinje myocyte with an ventricular cardiac muscle cell and contributes to the communication between the two cells. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T11:13:16Z molecular_function owl:Class GO:0086080 biolink:NamedThing protein binding involved in heterotypic cell-cell adhesion Binding to a protein or protein complex contributing to the adhesion of two different types of cells. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:53:52Z molecular_function owl:Class GO:1901803 biolink:NamedThing 1,5-anhydro-D-fructose biosynthetic process The chemical reactions and pathways resulting in the formation of 1,5-anhydro-D-fructose. tmpzr1t_l9r_go_relaxed.owl 1,5-anhydro-D-fructose formation|1,5-anhydro-D-fructose synthesis|1,5-anhydro-D-fructose biosynthesis|1,5-anhydro-D-fructose anabolism yaf 2013-01-22T09:56:34Z biological_process owl:Class GO:0042181 biolink:NamedThing ketone biosynthetic process The chemical reactions and pathways resulting in the formation of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups. tmpzr1t_l9r_go_relaxed.owl ketone anabolism|ketone formation|ketone synthesis|ketone biosynthesis biological_process owl:Class GO:1900802 biolink:NamedThing cspyrone B1 biosynthetic process The chemical reactions and pathways resulting in the formation of cspyrone B1. tmpzr1t_l9r_go_relaxed.owl cspyrone B1 anabolism|cspyrone B1 biosynthesis|cspyrone B1 formation|cspyrone B1 synthesis di 2012-06-04T09:51:06Z biological_process owl:Class GO:1901336 biolink:NamedThing lactone biosynthetic process The chemical reactions and pathways resulting in the formation of lactone. tmpzr1t_l9r_go_relaxed.owl lactone biosynthesis|lactone anabolism|lactone formation|lactone synthesis bf 2012-09-03T10:27:29Z biological_process owl:Class GO:0014050 biolink:NamedThing negative regulation of glutamate secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of glutamate. tmpzr1t_l9r_go_relaxed.owl inhibition of glutamate secretion|down-regulation of glutamate secretion|downregulation of glutamate secretion|down regulation of glutamate secretion biological_process owl:Class GO:1903531 biolink:NamedThing negative regulation of secretion by cell Any process that stops, prevents or reduces the frequency, rate or extent of secretion by cell. tmpzr1t_l9r_go_relaxed.owl down regulation of secretion by cell|downregulation of secretion by cell|downregulation of cellular secretion|down-regulation of cellular secretion|negative regulation of cellular secretion|inhibition of secretion by cell|inhibition of cellular secretion|down regulation of cellular secretion|down-regulation of secretion by cell pm 2014-10-08T13:25:08Z biological_process owl:Class GO:0008204 biolink:NamedThing ergosterol metabolic process The chemical reactions and pathways involving ergosterol, (22E)-ergosta-5,7,22-trien-3-beta-ol, a sterol found in ergot, yeast and moulds. It is the most important of the D provitamins and is converted to vitamin D2 on irradiation with UV light. tmpzr1t_l9r_go_relaxed.owl ergosterol metabolism biological_process owl:Class GO:0016128 biolink:NamedThing phytosteroid metabolic process The chemical reactions and pathways involving phytosteroids, steroids of higher plants that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. tmpzr1t_l9r_go_relaxed.owl phytosteroid metabolism biological_process owl:Class GO:0016257 biolink:NamedThing N-glycan processing to secreted and cell-surface N-glycans The modification of high-mannose (Man9-Asn) N-glycans by mannosyl-oligosaccharide 1,2-alpha-mannosidase. This may result in Man8GlcNAc2-Asn N-glycans (which in yeast may be subsequently modified by the addition of further mannose residues) or Man5GlcNAc2-Asn N-glycans that are substrates for further diversification in the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006491 biolink:NamedThing N-glycan processing The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. tmpzr1t_l9r_go_relaxed.owl glycoprotein trimming involved in glycoprotein maturation|N-linked glycoprotein maturation GO:0006492 biological_process owl:Class GO:0034781 biolink:NamedThing N-cyclohexylformamide amidohydrolase activity Catalysis of the reaction: N-cyclohexylformamide + OH- = cyclohexylamine + formate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1030 molecular_function owl:Class GO:2000438 biolink:NamedThing negative regulation of monocyte extravasation Any process that stops, prevents or reduces the frequency, rate or extent of monocyte extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:24:44Z biological_process owl:Class GO:0080140 biolink:NamedThing regulation of jasmonic acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving jasmonic acid. tmpzr1t_l9r_go_relaxed.owl dhl 2009-05-19T04:24:55Z biological_process owl:Class GO:0019217 biolink:NamedThing regulation of fatty acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids. tmpzr1t_l9r_go_relaxed.owl regulation of fatty acid metabolism GO:0006632 biological_process owl:Class GO:1902693 biolink:NamedThing superoxide dismutase complex A protein complex which is capable of superoxide dismutase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is SOD1 in Saccharomyces cerevisiae S288c (UniProt symbol P00445) in PMID:10026301. bhm 2014-02-18T11:10:11Z cellular_component owl:Class GO:1990204 biolink:NamedThing oxidoreductase complex Any protein complex that possesses oxidoreductase activity. tmpzr1t_l9r_go_relaxed.owl redox complex|oxidation-reduction complex bhm 2013-10-07T08:24:47Z cellular_component owl:Class GO:0015866 biolink:NamedThing ADP transport The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015711 biolink:NamedThing organic anion transport The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102025 biolink:NamedThing ABC-type thiosulfate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiosulfate(out) = ADP + phosphate + thiosulfate(in). tmpzr1t_l9r_go_relaxed.owl thiosulfate transmembrane-transporting ATPase activity|thiosulphate ABC transporter activity|ATPase-coupled thiosulfate transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/14642 EC:7.3.2.3|MetaCyc:ABC-7-RXN|RHEA:29871 GO:0032146 molecular_function owl:Class GO:0030583 biolink:NamedThing myxococcal fruiting body development The process whose specific outcome is the progression of the myxococcal fruiting body over time, from its formation to the mature structure. The process begins when myxococci respond to a lack of nutrients in the environment and ends when the myxococcal fruiting body is a mature structure. tmpzr1t_l9r_go_relaxed.owl fruiting body development in cellular response to starvation|fruiting body development in response to starvation For example, as seen in myxobacterium. It is not intended to describe fruiting body development as is Dictyostelium. GO:0055084 biological_process owl:Class GO:1902761 biolink:NamedThing positive regulation of chondrocyte development Any process that activates or increases the frequency, rate or extent of chondrocyte development. tmpzr1t_l9r_go_relaxed.owl activation of chondrocyte development|up regulation of chondrocyte development|upregulation of chondrocyte development|up-regulation of chondrocyte development mr 2014-03-07T17:45:55Z biological_process owl:Class GO:1901049 biolink:NamedThing atropine metabolic process The chemical reactions and pathways involving atropine. tmpzr1t_l9r_go_relaxed.owl atropine metabolism yaf 2012-06-28T04:51:25Z biological_process owl:Class GO:0046448 biolink:NamedThing tropane alkaloid metabolic process The chemical reactions and pathways involving tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system. tmpzr1t_l9r_go_relaxed.owl tropane alkaloid metabolism biological_process owl:Class GO:0035531 biolink:NamedThing regulation of chemokine (C-C motif) ligand 6 production Any process that modulates the frequency, rate, or extent of production of chemokine (C-C motif) ligand 6 (CCL6). tmpzr1t_l9r_go_relaxed.owl regulation of CCL6 production|regulation of chemokine (C-C motif) ligand 6 secretion|chemokine (C-C motif) ligand 6 secretion bf 2010-05-07T10:22:51Z GO:0035535|GO:0035534 biological_process owl:Class GO:1902954 biolink:NamedThing regulation of early endosome to recycling endosome transport Any process that modulates the frequency, rate or extent of early endosome to recycling endosome transport. tmpzr1t_l9r_go_relaxed.owl sjp 2014-05-02T09:06:23Z biological_process owl:Class GO:1903649 biolink:NamedThing regulation of cytoplasmic transport Any process that modulates the frequency, rate or extent of cytoplasmic transport. tmpzr1t_l9r_go_relaxed.owl regulation of cytoplasmic streaming jl 2014-11-24T13:38:17Z biological_process owl:Class GO:0097398 biolink:NamedThing cellular response to interleukin-17 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-17 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-17 pr 2012-10-23T13:25:43Z biological_process owl:Class GO:0097396 biolink:NamedThing response to interleukin-17 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-17 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-17 pr 2012-10-23T13:22:28Z biological_process owl:Class GO:1905776 biolink:NamedThing positive regulation of DNA helicase activity Any process that activates or increases the frequency, rate or extent of ATP-dependent DNA helicase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of ATP-dependent DNA helicase activity|up-regulation of ATP-dependent DNA helicase activity|activation of ATP-dependent DNA helicase activity|up-regulation of DNA helicase activity|positive regulation of ATP-dependent DNA helicase activity|up regulation of DNA helicase activity|activation of DNA helicase activity|upregulation of ATP-dependent DNA helicase activity|upregulation of DNA helicase activity rb 2013-10-15T21:20:10Z GO:1902451 biological_process owl:Class GO:1905464 biolink:NamedThing positive regulation of DNA duplex unwinding Any process that activates or increases the frequency, rate or extent of DNA duplex unwinding. tmpzr1t_l9r_go_relaxed.owl up-regulation of duplex DNA melting|up regulation of duplex DNA melting|up regulation of DNA duplex unwinding|upregulation of duplex DNA melting|activation of DNA unwinding|activation of DNA duplex unwinding|positive regulation of duplex DNA melting|upregulation of DNA duplex unwinding|up-regulation of DNA unwinding|activation of duplex DNA melting|positive regulation of DNA unwinding|up regulation of DNA unwinding|upregulation of DNA unwinding|up-regulation of DNA duplex unwinding ans 2016-09-19T11:58:55Z biological_process owl:Class GO:0046775 biolink:NamedThing suppression by virus of host cytokine production Any viral process that results in the inhibition of host cell cytokine production. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host cytokine production biological_process owl:Class GO:0075528 biolink:NamedThing modulation by virus of host immune response The process in which a virus effects a change in the host immune response. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host immune system process jl 2011-08-04T02:47:57Z biological_process owl:Class GO:2000098 biolink:NamedThing negative regulation of smooth muscle cell-matrix adhesion Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T04:22:22Z biological_process owl:Class GO:1901098 biolink:NamedThing positive regulation of autophagosome maturation Any process that activates or increases the frequency, rate or extent of autophagosome maturation. tmpzr1t_l9r_go_relaxed.owl up regulation of autophagosome maturation|up regulation of autophagic vacuole maturation|activation of autophagosome maturation|positive regulation of autophagosome fusion|activation of fusion of autophagosome with lysosome|up-regulation of autolysosome formation|positive regulation of autolysosome formation|activation of autophagic vacuole fusion|upregulation of amphisome-lysosome fusion|positive regulation of autophagic vacuole fusion|up-regulation of autophagic vacuole fusion|up regulation of amphisome-lysosome fusion|activation of amphisome-lysosome fusion|up-regulation of amphisome-lysosome fusion|upregulation of autolysosome formation|up regulation of autolysosome formation|up-regulation of autophagic vacuole maturation|up regulation of fusion of autophagosome with lysosome|upregulation of autophagic vacuole fusion|up-regulation of fusion of autophagosome with lysosome|positive regulation of fusion of autophagosome with lysosome|upregulation of autophagosome maturation|activation of autophagic vacuole maturation|activation of autolysosome formation|up regulation of autophagic vacuole fusion|upregulation of fusion of autophagosome with lysosome|positive regulation of amphisome-lysosome fusion|up-regulation of autophagosome maturation|upregulation of autophagic vacuole maturation lb 2012-07-10T07:22:34Z GO:1902454 biological_process owl:Class GO:1901096 biolink:NamedThing regulation of autophagosome maturation Any process that modulates the frequency, rate or extent of autophagosome maturation. tmpzr1t_l9r_go_relaxed.owl regulation of autolysosome formation|regulation of fusion of autophagosome with lysosome|regulation of amphisome-lysosome fusion|regulation of autophagosome fusion|regulation of autophagic vacuole fusion lb 2012-07-10T07:22:01Z GO:1902452 biological_process owl:Class GO:0015014 biolink:NamedThing heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process The chemical reactions and pathways resulting in the formation of polysaccharide chain component of heparan sulfate proteoglycan. tmpzr1t_l9r_go_relaxed.owl heparan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthetic process|heparan sulfate proteoglycan formation, polysaccharide chain formation|heparan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthesis|heparan sulfate proteoglycan anabolism, polysaccharide chain anabolism|heparan sulfate proteoglycan formation, polysaccharide chain biosynthesis|heparan sulfate proteoglycan synthesis, polysaccharide chain synthesis|heparan sulfate proteoglycan chain elongation|heparin proteoglycan biosynthetic process, polysaccharide chain biosynthetic process biological_process owl:Class GO:0033692 biolink:NamedThing cellular polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of many (typically more than 10) monosaccharide residues linked glycosidically, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl cellular glycan biosynthetic process|cellular polysaccharide anabolism|cellular polysaccharide synthesis|cellular polysaccharide biosynthesis|cellular polysaccharide formation|cellular glycan biosynthesis biological_process owl:Class GO:0072141 biolink:NamedThing renal interstitial fibroblast development The process whose specific outcome is the progression of a renal interstitial fibroblast over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl kidney interstitial cell development mah 2010-02-24T01:39:05Z biological_process owl:Class GO:1905341 biolink:NamedThing negative regulation of protein localization to kinetochore Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localization to kinetochore|inhibition of protein localization to kinetochore|inhibition of condensin localization to kinetochore|down-regulation of protein localisation to kinetochore|down regulation of protein localisation to kinetochore|inhibition of protein localisation to kinetochore|negative regulation of protein localisation to kinetochore|downregulation of protein localization to kinetochore|down regulation of condensin localization to kinetochore|downregulation of protein localisation to kinetochore|downregulation of condensin localization to kinetochore|down-regulation of protein localization to kinetochore|down-regulation of condensin localization to kinetochore|negative regulation of condensin localization to kinetochore Q9H211 in Human in PMID:22581055 es 2016-07-27T15:26:44Z biological_process owl:Class GO:0048523 biolink:NamedThing negative regulation of cellular process Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. tmpzr1t_l9r_go_relaxed.owl downregulation of cellular process|down regulation of cellular process|inhibition of cellular process|down-regulation of cellular process|negative regulation of cellular physiological process GO:0051243 biological_process owl:Class GO:1904402 biolink:NamedThing response to nocodazole Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nocodazole stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T21:10:45Z biological_process owl:Class GO:1901654 biolink:NamedThing response to ketone A response that results in a state of tolerance to ketone. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to ketone pr 2012-11-20T10:55:47Z GO:1990369 biological_process owl:Class GO:1901680 biolink:NamedThing sulfur-containing amino acid secondary active transmembrane transporter activity Enables the transfer of sulfur-containing amino acid from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-22T16:16:48Z molecular_function owl:Class GO:0000099 biolink:NamedThing sulfur amino acid transmembrane transporter activity Enables the transfer of sulfur amino acids from one side of a membrane to the other. Sulphur amino acids contain sulfur in the form of cystine, methionine or their derivatives. tmpzr1t_l9r_go_relaxed.owl sulphur amino acid transmembrane transporter activity|sulphur amino acid transporter activity|sulfur amino acid transporter activity molecular_function owl:Class GO:0044878 biolink:NamedThing mitotic cytokinesis checkpoint signaling A signaling process that contributes to a mitotic cell cycle checkpoint that detects a defect in cytokinesis and prevents further rounds of nuclear division until cytokinesis is completed. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in mitotic cytokinesis checkpoint|signalling cascade involved in mitotic cytokinesis checkpoint|signaling pathway involved in mitotic cytokinesis checkpoint|cytokinesis after mitosis checkpoint|defective cytokinesis checkpoint|mitotic cytokinesis checkpoint|signalling pathway involved in mitotic cytokinesis checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2015-01-13T15:30:23Z GO:1903820 biological_process owl:Class GO:0010972 biolink:NamedThing negative regulation of G2/M transition of mitotic cell cycle Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitotic entry tb 2009-06-01T10:18:29Z biological_process owl:Class GO:0047599 biolink:NamedThing 8-oxocoformycin reductase activity Catalysis of the reaction: coformycin + NADP(+) = 8-oxocoformycin + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 8-ketodeoxycoformycin reductase activity|coformycin:NADP+ 8-oxidoreductase activity RHEA:23168|MetaCyc:8-OXOCOFORMYCIN-REDUCTASE-RXN|KEGG_REACTION:R03667|EC:1.1.1.235 molecular_function owl:Class GO:0016879 biolink:NamedThing ligase activity, forming carbon-nitrogen bonds Catalysis of the joining of two molecules, or two groups within a single molecule, via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl other carbon-nitrogen ligase activity EC:6.3.-.- molecular_function owl:Class GO:0000952 biolink:NamedThing aromatic amino acid family catabolic process to carboxylic acid via Ehrlich pathway The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanoate, 4-hydroxyphenylethanoate, or 2-(Indol-3-yl)-ethanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000948 biolink:NamedThing amino acid catabolic process to carboxylic acid via Ehrlich pathway The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006964 biolink:NamedThing positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl anti-Gram-negative bacterial polypeptide induction|anti-Gram-negative bacterial peptide induction|stimulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|up regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|up-regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|upregulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|activation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria biological_process owl:Class GO:1902103 biolink:NamedThing negative regulation of metaphase/anaphase transition of meiotic cell cycle Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl down regulation of metaphase/anaphase transition of meiotic cell cycle|down-regulation of metaphase/anaphase transition of meiotic cell cycle|down-regulation of meiotic metaphase/anaphase transition|downregulation of metaphase/anaphase transition of meiotic cell cycle|inhibition of metaphase/anaphase transition of meiotic cell cycle|down regulation of meiotic metaphase/anaphase transition|downregulation of meiotic metaphase/anaphase transition|inhibition of meiotic metaphase/anaphase transition|negative regulation of meiotic metaphase/anaphase transition jl 2013-05-02T12:45:43Z biological_process owl:Class GO:1905133 biolink:NamedThing negative regulation of meiotic chromosome separation Any process that stops, prevents or reduces the frequency, rate or extent of meiotic chromosome separation. tmpzr1t_l9r_go_relaxed.owl down regulation of meiotic chromosome resolution|negative regulation of chromosome separation during meiosis|down-regulation of chromosome separation during meiosis|inhibition of chromosome separation during meiosis|downregulation of meiotic chromosome separation|downregulation of chromosome separation during meiosis|inhibition of meiotic chromosome resolution|inhibition of meiotic chromosome separation|negative regulation of meiotic chromosome resolution|down regulation of meiotic chromosome separation|down-regulation of meiotic chromosome resolution|down-regulation of meiotic chromosome separation|down regulation of chromosome separation during meiosis|downregulation of meiotic chromosome resolution dph 2016-04-12T17:46:37Z biological_process owl:Class GO:0005983 biolink:NamedThing starch catabolic process The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants. tmpzr1t_l9r_go_relaxed.owl starch catabolism|starch breakdown|starch degradation MetaCyc:PWY-842 biological_process owl:Class GO:0044247 biolink:NamedThing cellular polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of polysaccharides, polymers of many (typically more than 10) monosaccharide residues linked glycosidically, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular polysaccharide breakdown|cellular polysaccharide catabolism|cellular polysaccharide degradation biological_process owl:Class GO:1990318 biolink:NamedThing collagen type XIX trimer A collagen homotrimer of alpha1(XIX) chains; type XIX collagen triple helices localize to basement membrane zones in differentiating muscle cells. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T16:05:57Z cellular_component owl:Class GO:0098651 biolink:NamedThing basement membrane collagen trimer Any collagen timer that is part of a basement membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048235 biolink:NamedThing pollen sperm cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte. tmpzr1t_l9r_go_relaxed.owl sperm cell differentiation|male gamete generation|male gametophyte sperm cell differentiation GO:0048234 biological_process owl:Class GO:0031405 biolink:NamedThing lipoic acid binding Binding to lipoic acid, 1,2-dithiolane-3-pentanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097159 biolink:NamedThing organic cyclic compound binding Binding to an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-23T02:31:01Z molecular_function owl:Class GO:0033507 biolink:NamedThing glucosinolate biosynthetic process from phenylalanine The chemical reactions and pathways resulting in the formation of glucosinolates from other compounds including phenylalanine. tmpzr1t_l9r_go_relaxed.owl glucosinolate formation from phenylalanine|glucosinolate anabolism from phenylalanine|glucosinolate biosynthesis from phenylalanine|glucosinolate synthesis from phenylalanine MetaCyc:PWY-2821 biological_process owl:Class GO:0019761 biolink:NamedThing glucosinolate biosynthetic process The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl glucosinolate formation|glucosinolate anabolism|glucosinolate synthesis|glucosinolate biosynthesis biological_process owl:Class GO:0004075 biolink:NamedThing biotin carboxylase activity Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein. tmpzr1t_l9r_go_relaxed.owl biotin carboxylase (component of acetyl CoA carboxylase) activity|biotin-carboxyl-carrier-protein:carbon-dioxide ligase (ADP-forming) activity EC:6.3.4.14|RHEA:13501|MetaCyc:BIOTIN-CARBOXYL-RXN molecular_function owl:Class GO:0009102 biolink:NamedThing biotin biosynthetic process The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. tmpzr1t_l9r_go_relaxed.owl biotin synthesis|biotin anabolism|vitamin H biosynthesis|vitamin B7 biosynthesis|vitamin B7 biosynthetic process|biotin formation|biotin biosynthesis|vitamin H biosynthetic process MetaCyc:BIOTIN-SYNTHESIS-PWY biological_process owl:Class GO:0017166 biolink:NamedThing vinculin binding Binding to vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008092 biolink:NamedThing cytoskeletal protein binding Binding to a protein component of a cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035265 biolink:NamedThing organ growth The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003824 biolink:NamedThing catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. tmpzr1t_l9r_go_relaxed.owl enzyme activity Wikipedia:Enzyme molecular_function owl:Class GO:1903592 biolink:NamedThing positive regulation of lysozyme activity Any process that activates or increases the frequency, rate or extent of lysozyme activity. tmpzr1t_l9r_go_relaxed.owl activation of muramidase activity|up-regulation of peptidoglycan N-acetylmuramoylhydrolase activity|up-regulation of mucopeptide glucohydrolase activity|upregulation of mucopeptide glucohydrolase activity|up-regulation of mucopeptide N-acetylmuramoylhydrolase activity|positive regulation of globulin G1|up-regulation of globulin G1|up-regulation of N,O-diacetylmuramidase activity|activation of mucopeptide N-acetylmuramoylhydrolase activity|activation of L-7001|activation of 1,4-N-acetylmuramidase activity|activation of PR1-lysozyme|upregulation of N,O-diacetylmuramidase activity|up-regulation of lysozyme activity|upregulation of globulin G1|up regulation of N,O-diacetylmuramidase activity|up-regulation of muramidase activity|up-regulation of L-7001|upregulation of lysozyme g|upregulation of L-7001|activation of globulin G1|up-regulation of 1,4-N-acetylmuramidase activity|positive regulation of N,O-diacetylmuramidase activity|positive regulation of globulin G|up regulation of globulin G|positive regulation of lysozyme g|up regulation of mucopeptide glucohydrolase activity|upregulation of muramidase activity|up regulation of 1,4-N-acetylmuramidase activity|positive regulation of L-7001|upregulation of 1,4-N-acetylmuramidase activity|positive regulation of 1,4-N-acetylmuramidase activity|activation of lysozyme activity|upregulation of PR1-lysozyme|up regulation of muramidase activity|activation of lysozyme g|upregulation of peptidoglycan N-acetylmuramoylhydrolase activity|activation of peptidoglycan N-acetylmuramoylhydrolase activity|activation of N,O-diacetylmuramidase activity|upregulation of globulin G|upregulation of lysozyme activity|up regulation of globulin G1|up-regulation of globulin G|up regulation of mucopeptide N-acetylmuramoylhydrolase activity|up regulation of lysozyme g|up-regulation of lysozyme g|positive regulation of mucopeptide glucohydrolase activity|up regulation of L-7001|positive regulation of PR1-lysozyme|positive regulation of mucopeptide N-acetylmuramoylhydrolase activity|up regulation of lysozyme activity|upregulation of mucopeptide N-acetylmuramoylhydrolase activity|activation of globulin G|up regulation of PR1-lysozyme|positive regulation of peptidoglycan N-acetylmuramoylhydrolase activity|up-regulation of PR1-lysozyme|activation of mucopeptide glucohydrolase activity|positive regulation of muramidase activity|up regulation of peptidoglycan N-acetylmuramoylhydrolase activity mr 2014-11-05T21:41:39Z biological_process owl:Class GO:0051345 biolink:NamedThing positive regulation of hydrolase activity Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds. tmpzr1t_l9r_go_relaxed.owl hydrolase activator|upregulation of hydrolase activity|up-regulation of hydrolase activity|up regulation of hydrolase activity|stimulation of hydrolase activity|activation of hydrolase activity biological_process owl:Class GO:1905510 biolink:NamedThing negative regulation of myosin II filament assembly Any process that stops, prevents or reduces the frequency, rate or extent of myosin II filament assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of myosin II filament assembly|negative regulation of myosin II polymerization|down regulation of myosin II polymerization|down-regulation of myosin II polymerization|down regulation of myosin II filament assembly|downregulation of myosin II polymerization|inhibition of myosin II polymerization|downregulation of myosin II filament assembly|inhibition of myosin II filament assembly positive regulation / down regulation of the formation of a bipolar filament composed of myosin II molecules pf 2016-09-28T13:47:56Z biological_process owl:Class GO:0034875 biolink:NamedThing caffeine oxidase activity Catalysis of the reaction: caffeine + O2 + 2 H+ + 2 e- = 1,3,7-trimethyluric acid + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.17.5.2|RHEA:47148|UM-BBD_reactionID:r1321 molecular_function owl:Class GO:0033695 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a quinone or similar acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.17.5.- molecular_function owl:Class GO:0060180 biolink:NamedThing female mating behavior The specific behavior of a female organism that is associated with reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007617 biolink:NamedThing mating behavior The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes. tmpzr1t_l9r_go_relaxed.owl mating behaviour Wikipedia:Mating_behaviour biological_process owl:Class GO:0002635 biolink:NamedThing negative regulation of germinal center formation Any process that stops, prevents, or reduces the frequency, rate, or extent of germinal center formation. tmpzr1t_l9r_go_relaxed.owl inhibition of germinal center formation|downregulation of germinal center formation|down-regulation of germinal center formation|down regulation of germinal center formation biological_process owl:Class GO:0032743 biolink:NamedThing positive regulation of interleukin-2 production Any process that activates or increases the frequency, rate, or extent of interleukin-2 production. tmpzr1t_l9r_go_relaxed.owl activation of interleukin-2 production|stimulation of interleukin-2 production|upregulation of interleukin-2 production|up regulation of interleukin-2 production|up-regulation of interleukin-2 production|positive regulation of interleukin-2 biosynthetic process|positive regulation of IL-2 production|positive regulation of interleukin-2 secretion GO:1900042|GO:0045086 biological_process owl:Class GO:0001819 biolink:NamedThing positive regulation of cytokine production Any process that activates or increases the frequency, rate or extent of production of a cytokine. tmpzr1t_l9r_go_relaxed.owl activation of cytokine production|upregulation of cytokine production|positive regulation of cytokine biosynthetic process|up-regulation of cytokine production|positive regulation of cytokine secretion|stimulation of cytokine production|up regulation of cytokine production GO:0050715|GO:0042108 biological_process owl:Class GO:0097184 biolink:NamedThing response to azide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an azide stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2011-11-16T10:00:58Z biological_process owl:Class GO:1901698 biolink:NamedThing response to nitrogen compound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. tmpzr1t_l9r_go_relaxed.owl response to nitrogen molecular entity pr 2012-12-13T15:06:08Z biological_process owl:Class GO:1900332 biolink:NamedThing positive regulation of methane biosynthetic process from trimethylamine Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from trimethylamine. tmpzr1t_l9r_go_relaxed.owl up regulation of methane biosynthetic process from trimethylamine|up-regulation of methane biosynthetic process from trimethylamine|activation of methane biosynthetic process from trimethylamine|upregulation of methane biosynthetic process from trimethylamine tt 2012-04-06T01:53:20Z biological_process owl:Class GO:1900330 biolink:NamedThing regulation of methane biosynthetic process from trimethylamine Any process that modulates the frequency, rate or extent of methane biosynthetic process from trimethylamine. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:53:03Z biological_process owl:Class GO:0043169 biolink:NamedThing cation binding Binding to a cation, a charged atom or group of atoms with a net positive charge. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043167 biolink:NamedThing ion binding Binding to an ion, a charged atoms or groups of atoms. tmpzr1t_l9r_go_relaxed.owl atom binding molecular_function owl:Class GO:0036403 biolink:NamedThing arachidonate 8(S)-lipoxygenase activity Catalysis of the reaction: arachidonate + O(2) = (5Z,8S,9E,11Z,14Z)-8-hydroperoxyicosa-5,9,11,14-tetraenoate. tmpzr1t_l9r_go_relaxed.owl 8(S)-lipoxygenase activity|8-lipoxygenase (S-type) RHEA:38675|KEGG_REACTION:R07053 This activity produces the S-enantiomer of HPETE, 8(S)-HPETE. For the reaction producing the S-enantiomer, see GO:0047677. bf 2013-08-14T11:48:46Z molecular_function owl:Class GO:0033198 biolink:NamedThing response to ATP Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl response to adenosine triphosphate|response to adenosine 5'-triphosphate biological_process owl:Class GO:0061583 biolink:NamedThing colon epithelial cell chemotaxis The directed movement of a colon epithelial cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl dph 2013-12-23T07:46:57Z biological_process owl:Class GO:0061580 biolink:NamedThing colon epithelial cell migration The orderly movement of a colonic epithelial cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl dph 2013-12-23T07:26:54Z biological_process owl:Class GO:0035726 biolink:NamedThing common myeloid progenitor cell proliferation The multiplication or reproduction of common myeloid progenitor cells, resulting in the expansion of a cell population. A common myeloid progenitor cell is a progenitor cell committed to the myeloid lineage. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-10T02:57:19Z biological_process owl:Class GO:0106014 biolink:NamedThing regulation of inflammatory response to wounding Any process that modulates the frequency, rate or extent of the inflammatory response to wounding. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-28T20:03:14Z biological_process owl:Class GO:1901403 biolink:NamedThing positive regulation of tetrapyrrole metabolic process Any process that activates or increases the frequency, rate or extent of tetrapyrrole metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of tetrapyrrole metabolism|positive regulation of tetrapyrrole metabolism|upregulation of tetrapyrrole metabolic process|up-regulation of tetrapyrrole metabolism|up regulation of tetrapyrrole metabolism|up-regulation of tetrapyrrole metabolic process|upregulation of tetrapyrrole metabolism|activation of tetrapyrrole metabolic process|up regulation of tetrapyrrole metabolic process tt 2012-10-01T14:35:29Z biological_process owl:Class GO:0140022 biolink:NamedThing cnida A giant secretory organelle that comprises a bulb-shape capsule containing a coiled hollow tubule structure attached to it. A cnida defines the phylum Cnidaria. tmpzr1t_l9r_go_relaxed.owl cnidae (plural) cjm 2017-04-12T15:12:20Z cellular_component owl:Class GO:2000284 biolink:NamedThing positive regulation of cellular amino acid biosynthetic process Any process that activates or increases the frequency, rate or extent of cellular amino acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular amino acid formation|positive regulation of cellular amino acid synthesis|positive regulation of amino acid biosynthetic process|positive regulation of cellular amino acid biosynthesis|positive regulation of cellular amino acid anabolism vw 2010-12-10T11:54:27Z biological_process owl:Class GO:0045764 biolink:NamedThing positive regulation of cellular amino acid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amino acid. tmpzr1t_l9r_go_relaxed.owl activation of amino acid metabolic process|up regulation of amino acid metabolic process|stimulation of amino acid metabolic process|up-regulation of amino acid metabolic process|positive regulation of amino acid metabolism|upregulation of amino acid metabolic process biological_process owl:Class GO:0036277 biolink:NamedThing response to anticonvulsant Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anticonvulsant stimulus, a drug used to prevent seizures or reduce their severity. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T02:40:12Z biological_process owl:Class GO:0042221 biolink:NamedThing response to chemical Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl response to chemical substance|response to chemical stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0033642 biolink:NamedThing modulation by symbiont of host response to gravitational stimulus Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to gravitational stimulus biological_process owl:Class GO:0033635 biolink:NamedThing modulation by symbiont of host response to abiotic stimulus Any process in which an organism modulates a change in the state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031655 biolink:NamedThing negative regulation of heat dissipation Any process that stops, prevents, or reduces the rate or extent of heat dissipation. tmpzr1t_l9r_go_relaxed.owl inhibition of heat dissipation|down-regulation of heat dissipation|downregulation of heat dissipation|down regulation of heat dissipation biological_process owl:Class GO:0030100 biolink:NamedThing regulation of endocytosis Any process that modulates the frequency, rate or extent of endocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060627 biolink:NamedThing regulation of vesicle-mediated transport Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:29:43Z biological_process owl:Class GO:0032353 biolink:NamedThing negative regulation of hormone biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones. tmpzr1t_l9r_go_relaxed.owl down regulation of hormone biosynthetic process|down-regulation of hormone biosynthetic process|inhibition of hormone biosynthetic process|downregulation of hormone biosynthetic process biological_process owl:Class GO:0070901 biolink:NamedThing mitochondrial tRNA methylation The posttranscriptional addition of methyl groups to specific residues in a mitochondrial tRNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-02T04:08:00Z biological_process owl:Class GO:0070900 biolink:NamedThing mitochondrial tRNA modification The covalent alteration of one or more nucleotides within a mitochondrial tRNA molecule to produce a mitochondrial tRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-02T03:16:53Z biological_process owl:Class GO:0140023 biolink:NamedThing tRNA adenosine deamination to inosine The removal of an amine group from an adenosine to produce inosine within a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl A-to-I tRNA editing pg 2017-04-26T05:56:51Z biological_process owl:Class GO:0006400 biolink:NamedThing tRNA modification The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl tRNA editing The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specific child terms of 'RNA editing'. GO:0016549 biological_process owl:Class GO:0010470 biolink:NamedThing regulation of gastrulation Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000239 biolink:NamedThing negative regulation of tRNA export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of tRNA export from nucleus. tmpzr1t_l9r_go_relaxed.owl negative regulation of tRNA export out of nucleus|negative regulation of tRNA-nucleus export|negative regulation of tRNA export from cell nucleus|negative regulation of tRNA transport from nucleus to cytoplasm mah 2010-11-10T12:39:36Z biological_process owl:Class GO:2000198 biolink:NamedThing negative regulation of ribonucleoprotein complex localization Any process that stops, prevents, or reduces the frequency, rate or extent of ribonucleoprotein complex localization. tmpzr1t_l9r_go_relaxed.owl negative regulation of RNP localization|negative regulation of cellular ribonucleoprotein complex localization|negative regulation of establishment and maintenance of ribonucleoprotein complex localization|negative regulation of ribonucleoprotein complex localisation mah 2010-10-26T10:35:52Z biological_process owl:Class GO:1902324 biolink:NamedThing positive regulation of methyl-branched fatty acid biosynthetic process Any process that activates or increases the frequency, rate or extent of methyl-branched fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of methyl-branched fatty acid biosynthetic process|activation of methyl-branched fatty acid biosynthesis|up-regulation of methyl-branched fatty acid synthesis|upregulation of methyl-branched fatty acid formation|upregulation of methyl-branched fatty acid biosynthesis|activation of methyl-branched fatty acid formation|up-regulation of methyl-branched fatty acid biosynthesis|activation of methyl-branched fatty acid anabolism|positive regulation of methyl-branched fatty acid synthesis|positive regulation of methyl-branched fatty acid formation|up regulation of methyl-branched fatty acid synthesis|upregulation of methyl-branched fatty acid synthesis|up-regulation of methyl-branched fatty acid anabolism|up regulation of methyl-branched fatty acid biosynthesis|positive regulation of methyl-branched fatty acid anabolism|up regulation of methyl-branched fatty acid anabolism|up-regulation of methyl-branched fatty acid formation|up regulation of methyl-branched fatty acid formation|up-regulation of methyl-branched fatty acid biosynthetic process|positive regulation of methyl-branched fatty acid biosynthesis|up regulation of methyl-branched fatty acid biosynthetic process|upregulation of methyl-branched fatty acid anabolism|activation of methyl-branched fatty acid synthesis|activation of methyl-branched fatty acid biosynthetic process kmv 2013-07-24T20:15:31Z biological_process owl:Class GO:0051106 biolink:NamedThing positive regulation of DNA ligation Any process that activates or increases the frequency, rate or extent of DNA ligation, the re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase. tmpzr1t_l9r_go_relaxed.owl activation of DNA ligation|up regulation of DNA ligation|stimulation of DNA ligation|upregulation of DNA ligation|up-regulation of DNA ligation biological_process owl:Class GO:0051054 biolink:NamedThing positive regulation of DNA metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA metabolic process|upregulation of DNA metabolic process|stimulation of DNA metabolic process|positive regulation of DNA metabolism|activation of DNA metabolic process|up regulation of DNA metabolic process biological_process owl:Class GO:1903363 biolink:NamedThing negative regulation of cellular protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular protein degradation|downregulation of cellular protein degradation|negative regulation of cyclin catabolic process|down regulation of cellular protein catabolism|down regulation of cellular protein catabolic process|inhibition of cellular protein catabolic process|downregulation of cellular protein catabolic process|down-regulation of cellular protein breakdown|inhibition of cellular protein breakdown|inhibition of cellular protein catabolism|negative regulation of cellular protein breakdown|negative regulation of degradation of cyclin|down regulation of cellular protein breakdown|negative regulation of cellular protein catabolism|downregulation of cellular protein breakdown|down-regulation of cellular protein catabolism|downregulation of cellular protein catabolism|negative regulation of cyclin breakdown|negative regulation of cyclin degradation|down regulation of cellular protein degradation|inhibition of cellular protein degradation|down-regulation of cellular protein degradation|down-regulation of cellular protein catabolic process|negative regulation of cyclin catabolism kmv 2014-08-21T15:05:53Z GO:2000599 biological_process owl:Class GO:0032269 biolink:NamedThing negative regulation of cellular protein metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl inhibition of cellular protein metabolic process|down-regulation of cellular protein metabolic process|downregulation of cellular protein metabolic process|down regulation of cellular protein metabolic process|negative regulation of cellular protein metabolism biological_process owl:Class GO:0046498 biolink:NamedThing S-adenosylhomocysteine metabolic process The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosylhomocysteine metabolism biological_process owl:Class GO:0006575 biolink:NamedThing cellular modified amino acid metabolic process The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl cellular amino acid derivative metabolic process|modified amino acid metabolic process|cellular modified amino acid metabolism|amino acid derivative metabolic process|modified amino acid metabolism|cellular amino acid derivative metabolism biological_process owl:Class GO:0044524 biolink:NamedThing protein sulfhydration The modification of a protein amino acid by the addition of sulfur. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T09:39:33Z biological_process owl:Class GO:1900913 biolink:NamedThing positive regulation of olefin biosynthetic process Any process that activates or increases the frequency, rate or extent of olefin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of olefin synthesis|activation of olefin biosynthesis|up-regulation of olefin biosynthesis|up-regulation of olefin formation|up regulation of olefin biosynthesis|up regulation of olefin biosynthetic process|up regulation of olefin anabolism|positive regulation of olefin formation|upregulation of olefin biosynthetic process|activation of olefin anabolism|positive regulation of olefin anabolism|up regulation of olefin synthesis|up-regulation of olefin anabolism|activation of olefin synthesis|up-regulation of olefin synthesis|upregulation of olefin biosynthesis|positive regulation of olefin synthesis|upregulation of olefin formation|positive regulation of olefin biosynthesis|up-regulation of olefin biosynthetic process|activation of olefin biosynthetic process|up regulation of olefin formation|upregulation of olefin anabolism|activation of olefin formation tt 2012-06-13T04:20:38Z biological_process owl:Class GO:0032900 biolink:NamedThing negative regulation of neurotrophin production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of a neurotrophin. tmpzr1t_l9r_go_relaxed.owl down regulation of neurotrophin production|down-regulation of neurotrophin production|inhibition of neurotrophin production|downregulation of neurotrophin production biological_process owl:Class GO:0019206 biolink:NamedThing nucleoside kinase activity Catalysis of the reaction: ATP + nucleoside = ADP + nucleoside monophosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-110137|Reactome:R-HSA-73632|Reactome:R-HSA-74207|Reactome:R-HSA-73599|Reactome:R-HSA-109671|Reactome:R-HSA-109759|Reactome:R-HSA-109903|Reactome:R-HSA-73598|Reactome:R-HSA-110138 molecular_function owl:Class GO:0019205 biolink:NamedThing nucleobase-containing compound kinase activity Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide kinase activity molecular_function owl:Class GO:0070233 biolink:NamedThing negative regulation of T cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of T cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of T lymphocyte apoptosis|negative regulation of T-cell apoptosis|negative regulation of programmed cell death of T cells by apoptosis|down-regulation of T cell apoptosis|down regulation of T cell apoptosis|downregulation of T cell apoptosis|negative regulation of T cell apoptosis|negative regulation of T-lymphocyte apoptosis|inhibition of T cell apoptosis biological_process owl:Class GO:0070232 biolink:NamedThing regulation of T cell apoptotic process Any process that modulates the occurrence or rate of T cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte apoptosis|regulation of T-lymphocyte apoptosis|regulation of T-cell apoptosis|regulation of programmed cell death of T cells by apoptosis|regulation of T cell apoptosis biological_process owl:Class GO:0009850 biolink:NamedThing auxin metabolic process The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl auxin metabolism biological_process owl:Class GO:0044237 biolink:NamedThing cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances. tmpzr1t_l9r_go_relaxed.owl cellular metabolism|intermediary metabolism biological_process owl:Class GO:1902262 biolink:NamedThing apoptotic process involved in blood vessel morphogenesis Any apoptotic process that is involved in blood vessel morphogenesis. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in patterning of blood vessels|programmed cell death by apoptosis involved in patterning of blood vessels|signaling (initiator) caspase activity involved in patterning of blood vessels|apoptotic program involved in patterning of blood vessels|apoptotic programmed cell death involved in patterning of blood vessels|apoptotic cell death involved in patterning of blood vessels|type I programmed cell death involved in patterning of blood vessels dph 2013-06-25T16:16:00Z biological_process owl:Class GO:0035064 biolink:NamedThing methylated histone binding Binding to a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140034 biolink:NamedThing methylation-dependent protein binding Binding to a protein upon methylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require methylation of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of methylation. It may be that the methylation causes a conformational change that allows binding of the protein to another region; this type of methylation-dependent protein binding is valid for annotation to this term. pg 2017-05-17T15:40:02Z molecular_function owl:Class GO:0061441 biolink:NamedThing renal artery morphogenesis The process in which the anatomical structure of a renal artery is generated and organized. Renal arteries supply the kidneys with blood. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-08T12:42:09Z biological_process owl:Class GO:0048844 biolink:NamedThing artery morphogenesis The process in which the anatomical structures of arterial blood vessels are generated and organized. Arteries are blood vessels that transport blood from the heart to the body and its organs. tmpzr1t_l9r_go_relaxed.owl arteriogenesis|arterial morphogenesis biological_process owl:Class GO:0102851 biolink:NamedThing 1-18:2-2-16:0-phosphatidylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-16:0-phosphatidylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8318|EC:1.14.19.43 molecular_function owl:Class GO:0016717 biolink:NamedThing oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.- molecular_function owl:Class GO:0034093 biolink:NamedThing positive regulation of maintenance of sister chromatid cohesion Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034091 biolink:NamedThing regulation of maintenance of sister chromatid cohesion Any process that modulates the extent to which the association between sister chromatids of a replicated chromosome is maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900257 biolink:NamedThing negative regulation of beta1-adrenergic receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of beta1-adrenergic receptor activity. tmpzr1t_l9r_go_relaxed.owl downregulation of beta1-adrenergic receptor activity|down-regulation of beta1-adrenergic receptor activity|down-regulation of beta1 adrenoceptor|downregulation of beta1 adrenoceptor|down regulation of beta1 adrenoceptor|negative regulation of beta1 adrenoceptor|inhibition of beta1 adrenoceptor|inhibition of beta1-adrenergic receptor activity|down regulation of beta1-adrenergic receptor activity tb 2012-04-03T10:59:40Z biological_process owl:Class GO:0062088 biolink:NamedThing negative regulation of vein smooth muscle contraction Any process that decreases the frequency, rate or extent of vein smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-02T15:28:32Z biological_process owl:Class GO:0062086 biolink:NamedThing regulation of vein smooth muscle contraction Any process that modulates the frequency, rate or extent of vein smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-02T15:17:26Z biological_process owl:Class GO:1900666 biolink:NamedThing positive regulation of emodin biosynthetic process Any process that activates or increases the frequency, rate or extent of emodin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of emodin formation|upregulation of emodin biosynthetic process|up-regulation of emodin synthesis|up-regulation of emodin biosynthetic process|upregulation of emodin anabolism|positive regulation of emodin synthesis|up regulation of emodin biosynthetic process|activation of emodin biosynthesis|up-regulation of emodin anabolism|up regulation of emodin biosynthesis|activation of emodin formation|positive regulation of emodin biosynthesis|up regulation of emodin synthesis|upregulation of emodin biosynthesis|activation of emodin anabolism|up-regulation of emodin biosynthesis|upregulation of emodin synthesis|up-regulation of emodin formation|activation of emodin synthesis|activation of emodin biosynthetic process|positive regulation of emodin anabolism|upregulation of emodin formation|positive regulation of emodin formation|up regulation of emodin anabolism di 2012-05-22T04:15:06Z biological_process owl:Class GO:0009190 biolink:NamedThing cyclic nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. tmpzr1t_l9r_go_relaxed.owl cyclic nucleotide anabolism|cyclic nucleotide biosynthesis|cyclic nucleotide formation|cyclic nucleotide synthesis biological_process owl:Class GO:0009187 biolink:NamedThing cyclic nucleotide metabolic process The chemical reactions and pathways involving a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. tmpzr1t_l9r_go_relaxed.owl cyclic nucleotide metabolism biological_process owl:Class GO:0016137 biolink:NamedThing glycoside metabolic process The chemical reactions and pathways involving glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. tmpzr1t_l9r_go_relaxed.owl O-glycoside metabolism|O-glycoside metabolic process|glycoside metabolism GO:0016140 biological_process owl:Class GO:0102330 biolink:NamedThing palmitoyl-[acp] elongase/decarboxylase activity Catalysis of the reaction: malonyl-CoA + a palmitoyl-[acp] = 1-heptadecene + 2 carbon dioxide + coenzyme A + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13258 molecular_function owl:Class GO:0016747 biolink:NamedThing acyltransferase activity, transferring groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring groups other than amino-acyl groups|transferase activity, transferring acyl groups other than amino-acyl groups https://github.com/geneontology/go-ontology/issues/20486 EC:2.3.1.- molecular_function owl:Class GO:0005335 biolink:NamedThing serotonin:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: serotonin(out) + Na+(out) + Cl-(out) = serotonin(in) + Na+(in)+ Cl-(in). tmpzr1t_l9r_go_relaxed.owl sodium/serotonin symporter activity|serotonin transmembrane transporter activity|serotonin:sodium:chloride symporter activity Reactome:R-HSA-444008|RHEA:51196 GO:0015222|GO:0005336 molecular_function owl:Class GO:1901618 biolink:NamedThing organic hydroxy compound transmembrane transporter activity Enables the transfer of organic hydroxy compound from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-13T12:59:01Z molecular_function owl:Class GO:2001235 biolink:NamedThing positive regulation of apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of apoptotic signalling pathway pr 2011-11-24T01:20:58Z biological_process owl:Class GO:0035184 biolink:NamedThing histone threonine kinase activity Catalysis of the transfer of a phosphate group to a threonine residue of a histone. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl histone-threonine kinase activity molecular_function owl:Class GO:0004674 biolink:NamedThing protein serine/threonine kinase activity Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl protein serine kinase activity|protein serine-threonine kinase activity|serine protein kinase activity|protein kinase (phosphorylating) activity|serine/threonine protein kinase activity|serine(threonine) protein kinase activity|protein-serine kinase activity|serine-specific protein kinase activity|threonine-specific protein kinase activity|serine kinase activity|protein threonine kinase activity|protein phosphokinase activity https://github.com/geneontology/go-ontology/issues/20114 Reactome:R-HSA-5357472|Reactome:R-HSA-9612501|Reactome:R-HSA-5692775|Reactome:R-HSA-6795460|Reactome:R-HSA-199910|Reactome:R-HSA-5672978|Reactome:R-HSA-3249371|Reactome:R-HSA-5675198|Reactome:R-HSA-2399966|Reactome:R-HSA-3000310|Reactome:R-HSA-75820|Reactome:R-HSA-6799332|Reactome:R-HSA-6798372|Reactome:R-HSA-2399985|Reactome:R-HSA-5668984|Reactome:R-HSA-156678|Reactome:R-HSA-3857329|Reactome:R-HSA-5218854|Reactome:R-HSA-8868340|Reactome:R-HSA-4332363|Reactome:R-HSA-156673|Reactome:R-HSA-9023132|Reactome:R-HSA-2028591|Reactome:R-HSA-9662823|Reactome:R-HSA-5682983|Reactome:R-HSA-176116|Reactome:R-HSA-419083|Reactome:R-HSA-9009208|Reactome:R-HSA-165766|Reactome:R-HSA-446701|Reactome:R-HSA-5635842|Reactome:R-HSA-446694|Reactome:R-HSA-200143|Reactome:R-HSA-3371567|Reactome:R-HSA-9032751|Reactome:R-HSA-9652165|Reactome:R-HSA-5610718|Reactome:R-HSA-2028679|Reactome:R-HSA-5692779|Reactome:R-HSA-5213464|Reactome:R-HSA-5218826|Reactome:R-HSA-5357477|Reactome:R-HSA-2176475|Reactome:R-HSA-2399999|Reactome:R-HSA-202510|Reactome:R-HSA-109860|Reactome:R-HSA-349444|Reactome:R-HSA-3209160|Reactome:R-HSA-349455|Reactome:R-HSA-162657|Reactome:R-HSA-165777|Reactome:R-HSA-174119|Reactome:R-HSA-4793911|Reactome:R-HSA-6795290|Reactome:R-HSA-111970|Reactome:R-HSA-448955|Reactome:R-HSA-5679205|Reactome:R-HSA-9624526|Reactome:R-HSA-5687094|Reactome:R-HSA-199839|Reactome:R-HSA-195283|Reactome:R-HSA-165758|Reactome:R-HSA-6799097|Reactome:R-HSA-6805276|Reactome:R-HSA-3928616|Reactome:R-HSA-2214351|Reactome:R-HSA-2028675|Reactome:R-HSA-3928577|Reactome:R-HSA-2466068|Reactome:R-HSA-168140|Reactome:R-HSA-399978|Reactome:R-HSA-5675194|Reactome:R-HSA-937022|Reactome:R-HSA-5671763|Reactome:R-HSA-202222|Reactome:R-HSA-9633008|Reactome:R-HSA-198347|Reactome:R-HSA-2399969|Reactome:R-HSA-419644|Reactome:R-HSA-4551570|Reactome:R-HSA-2574840|Reactome:R-HSA-167084|Reactome:R-HSA-3371435|Reactome:R-HSA-2028629|Reactome:R-HSA-5693575|Reactome:R-HSA-5218814|Reactome:R-HSA-349426|Reactome:R-HSA-8878054|Reactome:R-HSA-9007539|Reactome:R-HSA-450827|Reactome:R-HSA-69608|Reactome:R-HSA-9648883|Reactome:R-HSA-2168079|Reactome:R-HSA-164151|Reactome:R-HSA-451347|Reactome:R-HSA-1362270|Reactome:R-HSA-5682598|Reactome:R-HSA-167098|Reactome:R-HSA-165162|Reactome:R-HSA-188350|Reactome:R-HSA-168053|Reactome:R-HSA-5666160|Reactome:R-HSA-5687086|Reactome:R-HSA-5693551|Reactome:R-HSA-5685156|Reactome:R-HSA-201691|Reactome:R-HSA-9648089|Reactome:R-HSA-170055|Reactome:R-HSA-3229152|Reactome:R-HSA-8868573|Reactome:R-HSA-202541|Reactome:R-HSA-5693540|Reactome:R-HSA-3371531|Reactome:R-HSA-165182|Reactome:R-HSA-2730868|Reactome:R-HSA-5665868|Reactome:R-HSA-5632672|Reactome:R-HSA-198613|Reactome:R-HSA-5610732|Reactome:R-HSA-5685242|Reactome:R-HSA-198756|Reactome:R-HSA-3000327|Reactome:R-HSA-170116|Reactome:R-HSA-187688|Reactome:R-HSA-2399988|Reactome:R-HSA-2028661|Reactome:R-HSA-5082387|Reactome:R-HSA-5693549|Reactome:R-HSA-9620004|Reactome:R-HSA-9612980|Reactome:R-HSA-202500|Reactome:R-HSA-165726|Reactome:R-HSA-5687090|Reactome:R-HSA-448948|Reactome:R-HSA-8850945|Reactome:R-HSA-975180|Reactome:R-HSA-75010|Reactome:R-HSA-3239014|Reactome:R-HSA-450499|Reactome:R-HSA-5668545|Reactome:R-HSA-8942836|Reactome:R-HSA-211650|Reactome:R-HSA-75809|Reactome:R-HSA-4608825|Reactome:R-HSA-8868666|Reactome:R-HSA-450474|Reactome:R-HSA-9673346|Reactome:R-HSA-975160|Reactome:R-HSA-912470|Reactome:R-HSA-8863007|Reactome:R-HSA-199299|Reactome:R-HSA-200421|Reactome:R-HSA-2029469|Reactome:R-HSA-2028598|Reactome:R-HSA-1168635|Reactome:R-HSA-1181156|Reactome:R-HSA-9694620|Reactome:R-HSA-69604|Reactome:R-HSA-9681627|Reactome:R-HSA-6795473|Reactome:R-HSA-199929|Reactome:R-HSA-5632670|Reactome:R-HSA-450463|Reactome:R-HSA-5683792|Reactome:R-HSA-5610730|Reactome:R-HSA-5672973|Reactome:R-HSA-400382|Reactome:R-HSA-9648888|Reactome:R-HSA-5228811|Reactome:R-HSA-9008480|Reactome:R-HSA-389756|Reactome:R-HSA-8948757|Reactome:R-HSA-199298|Reactome:R-HSA-1168638|Reactome:R-HSA-174174|Reactome:R-HSA-2470508|Reactome:R-HSA-5672008|Reactome:R-HSA-199935|Reactome:R-HSA-5685230|Reactome:R-HSA-209087|Reactome:R-HSA-6802926|Reactome:R-HSA-6805059|Reactome:R-HSA-2399981|Reactome:R-HSA-451152|Reactome:R-HSA-937059|Reactome:R-HSA-5624492|Reactome:R-HSA-445072|Reactome:R-HSA-139908|Reactome:R-HSA-5357831|Reactome:R-HSA-5686578|Reactome:R-HSA-5682101|Reactome:R-HSA-6801675|Reactome:R-HSA-9012319|Reactome:R-HSA-2399996|Reactome:R-HSA-211583|Reactome:R-HSA-2562526|Reactome:R-HSA-3928625|Reactome:R-HSA-2730896|Reactome:R-HSA-8863014|Reactome:R-HSA-5690250|Reactome:R-HSA-5694441|Reactome:R-HSA-2028284|Reactome:R-HSA-3928640|Reactome:R-HSA-2430535|Reactome:R-HSA-429714|Reactome:R-HSA-399944|Reactome:R-HSA-9656215|Reactome:R-HSA-165718|Reactome:R-HSA-8878050|Reactome:R-HSA-399950|Reactome:R-HSA-2028555|Reactome:R-HSA-8870558|Reactome:R-HSA-8868260|Reactome:R-HSA-2529020|Reactome:R-HSA-399939|Reactome:R-HSA-1454699|Reactome:R-HSA-8868567|Reactome:R-HSA-8863011|Reactome:R-HSA-9619515|Reactome:R-HSA-166119|Reactome:R-HSA-380272|Re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1|Reactome:R-HSA-8948039|Reactome:R-HSA-8876446|Reactome:R-HSA-163416|Reactome:R-HSA-2730856|Reactome:R-HSA-6805399|Reactome:R-HSA-432110|Reactome:R-HSA-6814409|Reactome:R-HSA-975878|Reactome:R-HSA-198669|Reactome:R-HSA-5627775|Reactome:R-HSA-9694293|Reactome:R-HSA-442724|Reactome:R-HSA-2028635|Reactome:R-HSA-5687101|Reactome:R-HSA-1449597|Reactome:R-HSA-163418|Reactome:R-HSA-5607722|Reactome:R-HSA-5692768|Reactome:R-HSA-5672948|Reactome:R-HSA-6802935|Reactome:R-HSA-166284|Reactome:R-HSA-75028|Reactome:R-HSA-5635841 GO:0004695|GO:0004696|GO:0106311|GO:0004700 molecular_function owl:Class GO:0097217 biolink:NamedThing sieve area A pit-like area in the cell wall of a sieve element; contains pores lined with callose and occupied by strands of protoplasmic material that interconnect the protoplasts of contiguous sieve elements. tmpzr1t_l9r_go_relaxed.owl Part of a sieve element (PO:0025406). pr 2012-01-13T05:39:03Z cellular_component owl:Class GO:0010456 biolink:NamedThing cell proliferation in dorsal spinal cord The multiplication or reproduction of cells, resulting in the expansion of the dorsal spinal cord cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061351 biolink:NamedThing neural precursor cell proliferation The multiplication or reproduction of neural precursor cells, resulting in the expansion of a cell population. A neural precursor cell is either a nervous system stem cell or a nervous system progenitor cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T11:06:04Z biological_process owl:Class GO:0001049 biolink:NamedThing RNA polymerase V core binding Binding to RNA polymerase V core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in production of noncoding transcripts at target loci for silencing. tmpzr1t_l9r_go_relaxed.owl krc 2010-09-23T01:41:08Z molecular_function owl:Class GO:0043175 biolink:NamedThing RNA polymerase core enzyme binding Binding to an RNA polymerase core enzyme, containing a specific subunit composition defined as the core enzyme. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034647 biolink:NamedThing histone H3-tri/di/monomethyl-lysine-4 demethylase activity Catalysis of the removal of a methyl group from a tri, a di or a monomethyl-lysine residue at position 4 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3-K4me2 demethylase activity|histone H3-K4me3 demethylase activity|histone demethylase activity (H3-trimethyl-K4 specific)|H3K4me3 demethylase activity|histone demethylase activity (H3-K4-me3 specific)|histone H3K4me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 EC:1.14.11.67|RHEA:60208 molecular_function owl:Class GO:0032453 biolink:NamedThing histone H3-methyl-lysine-4 demethylase activity Catalysis of the removal of a methyl group from a modified lysine residue at position 4 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone demethylase activity (H3-K4 specific)|histone H3K4 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 molecular_function owl:Class GO:0051283 biolink:NamedThing negative regulation of sequestering of calcium ion Any process that stops, prevents, or reduces the frequency, rate or extent of the binding or confining calcium ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl down regulation of sequestering of calcium ion|negative regulation of calcium ion (Ca2+) sequestering|downregulation of sequestering of calcium ion|negative regulation of calcium ion (Ca2+) retention|negative regulation of sequestering of calcium ion (Ca2+)|negative regulation of retention of calcium ion (Ca2+)|negative regulation of sequestration of calcium ion (Ca2+)|inhibition of sequestering of calcium ion|negative regulation of storage of calcium ion (Ca2+)|negative regulation of calcium ion (Ca2+) sequestration|down-regulation of sequestering of calcium ion|negative regulation of calcium ion (Ca2+) storage biological_process owl:Class GO:0019384 biolink:NamedThing caprolactam catabolic process The chemical reactions and pathways resulting in the breakdown of caprolactam, hexahydro-2h-azepin-2-one, a cyclic amide of caproic acid. tmpzr1t_l9r_go_relaxed.owl caprolactam catabolism|caprolactam breakdown|caprolactam degradation MetaCyc:P621-PWY biological_process owl:Class GO:1901565 biolink:NamedThing organonitrogen compound catabolic process The chemical reactions and pathways resulting in the breakdown of organonitrogen compound. tmpzr1t_l9r_go_relaxed.owl organonitrogen compound breakdown|organonitrogen compound degradation|organonitrogen compound catabolism pr 2012-11-04T15:17:56Z biological_process owl:Class GO:1902061 biolink:NamedThing betaine aldehyde metabolic process The chemical reactions and pathways involving betaine aldehyde. tmpzr1t_l9r_go_relaxed.owl betaine aldehyde metabolism di 2013-04-16T12:07:03Z biological_process owl:Class GO:0046119 biolink:NamedThing 7-methylguanosine catabolic process The chemical reactions and pathways resulting in the breakdown of 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA. tmpzr1t_l9r_go_relaxed.owl 7-methylguanosine catabolism|7-methylguanosine breakdown|7-methylguanosine degradation biological_process owl:Class GO:1901069 biolink:NamedThing guanosine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines). tmpzr1t_l9r_go_relaxed.owl guanosines catabolic process|guanosine-containing compound catabolism|guanosines catabolism|guanosine-containing compound degradation|guanosine-containing compound breakdown|guanosines degradation|guanosines breakdown bf 2012-07-02T01:52:00Z biological_process owl:Class GO:0071367 biolink:NamedThing cellular response to brassinosteroid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:13:33Z biological_process owl:Class GO:0009741 biolink:NamedThing response to brassinosteroid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. tmpzr1t_l9r_go_relaxed.owl response to brassinosteroid stimulus biological_process owl:Class GO:1903110 biolink:NamedThing regulation of single-strand break repair via homologous recombination Any process that modulates the frequency, rate or extent of single-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl pr 2014-06-09T12:11:26Z biological_process owl:Class GO:0043150 biolink:NamedThing DNA synthesis involved in double-strand break repair via homologous recombination The synthesis of DNA that contributes to the process of double-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl DNA synthesis during double-strand break repair via homologous recombination biological_process owl:Class GO:0071897 biolink:NamedThing DNA biosynthetic process The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. tmpzr1t_l9r_go_relaxed.owl DNA anabolism|DNA formation|DNA synthesis|DNA biosynthesis mah 2010-09-15T02:14:33Z biological_process owl:Class GO:1902977 biolink:NamedThing mitotic DNA replication preinitiation complex assembly Any DNA replication preinitiation complex assembly that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl pre-IC complex assembly involved in mitotic cell cycle|DNA replication preinitiation complex formation involved in mitotic cell cycle jl 2014-05-06T19:19:37Z biological_process owl:Class GO:0071163 biolink:NamedThing DNA replication preinitiation complex assembly The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at DNA replication origins immediately prior to the initiation of DNA replication. The complex consists of proteins that initiate the DNA binding, melt the helix and enable helicase activity. tmpzr1t_l9r_go_relaxed.owl DNA replication preinitiation complex formation|pre-IC complex assembly mah 2009-11-19T11:13:41Z GO:1902293|GO:1902316 biological_process owl:Class GO:0050050 biolink:NamedThing leucine N-acetyltransferase activity Catalysis of the reaction: L-leucine + acetyl-CoA = N-acetyl-L-leucine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl leucine acetyltransferase activity|acetyl-CoA:L-leucine N-acetyltransferase activity MetaCyc:LEUCINE-N-ACETYLTRANSFERASE-RXN|KEGG_REACTION:R01089|EC:2.3.1.66|RHEA:20089 molecular_function owl:Class GO:0008080 biolink:NamedThing N-acetyltransferase activity Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2473152|Reactome:R-HSA-9636560|Reactome:R-HSA-6790987|Reactome:R-HSA-2468039 molecular_function owl:Class GO:0061571 biolink:NamedThing TDP phosphorylation The process of introducing a phosphate group into TDP to produce a TTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T13:03:34Z biological_process owl:Class GO:0006165 biolink:NamedThing nucleoside diphosphate phosphorylation The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050848 biolink:NamedThing regulation of calcium-mediated signaling Any process that modulates the frequency, rate or extent of calcium-mediated signaling, the process in which a cell uses calcium ions to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl regulation of calcium-mediated signalling biological_process owl:Class GO:0070258 biolink:NamedThing inner membrane pellicle complex A membrane structure formed of two closely aligned lipid bilayers that lie beneath the plasma membrane and form part of the pellicle surrounding an apicomplexan parasite cell. tmpzr1t_l9r_go_relaxed.owl inner membrane complex cellular_component owl:Class GO:0060897 biolink:NamedThing neural plate regionalization The pattern specification process that results in the subdivision of an axis or axes of the neural plate in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T02:09:04Z biological_process owl:Class GO:0071553 biolink:NamedThing G protein-coupled pyrimidinergic nucleotide receptor activity Combining with a pyrimidine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl pyrimidinergic nucleotide receptor activity, G-protein coupled|G-protein coupled pyrimidinergic nucleotide receptor activity|pyrimidinergic nucleotide receptor activity, G protein coupled|G protein coupled pyrimidinergic nucleotide receptor activity mah 2010-01-13T03:13:22Z molecular_function owl:Class GO:0016502 biolink:NamedThing nucleotide receptor activity Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2001005 biolink:NamedThing positive regulation of pectin catabolic process Any process that activates or increases the frequency, rate or extent of pectin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of pectin degradation|positive regulation of pectin breakdown|positive regulation of pectin catabolism tt 2011-08-08T03:24:09Z biological_process owl:Class GO:0009896 biolink:NamedThing positive regulation of catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances. tmpzr1t_l9r_go_relaxed.owl up-regulation of catabolic process|upregulation of catabolic process|up regulation of catabolic process|activation of catabolic process|stimulation of catabolic process|positive regulation of degradation|positive regulation of catabolism|positive regulation of breakdown biological_process owl:Class GO:0010115 biolink:NamedThing regulation of abscisic acid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. tmpzr1t_l9r_go_relaxed.owl regulation of abscisic acid anabolism|regulation of abscisic acid biosynthesis|regulation of abscisic acid synthesis|regulation of abscisic acid formation biological_process owl:Class GO:0006213 biolink:NamedThing pyrimidine nucleoside metabolic process The chemical reactions and pathways involving any pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine metabolism|pyrimidine metabolic process|pyrimidine nucleoside metabolism biological_process owl:Class GO:0009116 biolink:NamedThing nucleoside metabolic process The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). tmpzr1t_l9r_go_relaxed.owl nucleoside metabolism biological_process owl:Class GO:0080052 biolink:NamedThing response to histidine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043200 biolink:NamedThing response to amino acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups. tmpzr1t_l9r_go_relaxed.owl response to amino acid stimulus GO:0010237 biological_process owl:Class GO:0044377 biolink:NamedThing RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II promoter proximal region sequence-specific DNA binding, bending|RNA polymerase II proximal promoter sequence-specific DNA binding, bending|RNA polymerase II proximal promoter region sequence-specific DNA binding, bending|RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending jl 2011-12-08T01:38:21Z molecular_function owl:Class GO:0044374 biolink:NamedThing sequence-specific DNA binding, bending The activity of binding selectively and non-covalently to DNA in a sequence-specific manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. tmpzr1t_l9r_go_relaxed.owl DNA bending involving sequence-specific DNA binding jl 2011-12-01T04:05:59Z molecular_function owl:Class GO:1900874 biolink:NamedThing heptadec-1-ene metabolic process The chemical reactions and pathways involving heptadec-1-ene. tmpzr1t_l9r_go_relaxed.owl heptadec-1-ene metabolism tt 2012-06-13T01:49:51Z biological_process owl:Class GO:1905697 biolink:NamedThing negative regulation of polysome binding Any process that stops, prevents or reduces the frequency, rate or extent of polysome binding. tmpzr1t_l9r_go_relaxed.owl down regulation of polyribosome binding|down regulation of polysome binding|inhibition of polyribosome binding|down-regulation of polysome binding|inhibition of polysome binding|negative regulation of polyribosome binding|downregulation of polyribosome binding|down-regulation of polyribosome binding|downregulation of polysome binding bc 2016-11-14T23:26:29Z biological_process owl:Class GO:0051100 biolink:NamedThing negative regulation of binding Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. tmpzr1t_l9r_go_relaxed.owl down regulation of binding|downregulation of binding|down-regulation of binding|inhibition of binding biological_process owl:Class GO:0005309 biolink:NamedThing creatine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: creatine(out) + Na+(out) = creatine(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/chloride-dependent creatine transporter Reactome:R-HSA-200396 molecular_function owl:Class GO:0015370 biolink:NamedThing solute:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + Na+(out) = solute(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl proline/glycine/betaine:hydrogen/sodium symporter activity Reactome:R-HSA-8876283 molecular_function owl:Class GO:0110016 biolink:NamedThing B-WICH complex A chromatin remodeling complex that positively regulates histone H3 acetylation, in particular H3K9, by recruiting histone acetyltransferases to rDNA gene regions. Located in the nucleolus where it assembles on RNA Polymerase I (Pol I) and possibly on RNA Polymerase III (Pol III) promoter and coding regions during early G1 phase and activates the post-initiation phases of Pol I transcription. May also activate RNA Polymerase II (Pol II) gene transcription. In mammals, B-WICH contains the WICH complex core of BAZ1B and SMARCA5, additional protein subunits and possibly rRNAs. Although it contains several catalytic subunits it is not clear which functions are carried out by the complex itself. tmpzr1t_l9r_go_relaxed.owl An example is BAZ1B (Q9UIG0) in human in PMID:16603771 (by IPI). kmv 2017-05-26T19:53:53Z cellular_component owl:Class GO:0070603 biolink:NamedThing SWI/SNF superfamily-type complex A protein complex that contains an ortholog of the Saccharomyces ATPase Swi2/Snf2 as one of the catalytic subunit components (ATPase) and mediates assembly of nucleosomes, changes to the spacing or structure of nucleosomes, or some combination of those activities in a manner that requires ATP. tmpzr1t_l9r_go_relaxed.owl SWI-SNF-type complex|BAF-type complex|SWI2/SNF2 superfamily ATP-dependent chromatin remodeling complex|SWI-SNF global transcription activator complex|SWI/SNF-type complex mah 2009-04-29T12:55:46Z GO:0090544 cellular_component owl:Class GO:0070577 biolink:NamedThing lysine-acetylated histone binding Binding to a histone in which a lysine residue has been modified by acetylation. tmpzr1t_l9r_go_relaxed.owl acetylated histone residue binding mah 2009-04-21T03:03:35Z molecular_function owl:Class GO:0140033 biolink:NamedThing acetylation-dependent protein binding Binding to a protein upon acetylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require acetylation of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of acetylation. It may be that the acetylation causes a conformational change that allows binding of the protein to another region; this type of acetylation-dependent protein binding is valid for annotation to this term. pg 2017-05-17T15:35:43Z molecular_function owl:Class GO:0048863 biolink:NamedThing stem cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Stem_cell_differentiation biological_process owl:Class GO:0071893 biolink:NamedThing BMP signaling pathway involved in nephric duct formation A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to nephric duct formation. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in nephric duct formation mah 2010-09-14T03:14:59Z biological_process owl:Class GO:0030509 biolink:NamedThing BMP signaling pathway A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl dpp receptor signalling pathway|decapentaplegic receptor signaling pathway|BMP receptor signaling pathway|BMP signalling pathway|dpp signaling pathway|decapentaplegic signaling pathway|bone morphogenetic protein signalling pathway|bone morphogenetic protein signaling pathway|dpp receptor signaling pathway|decapentaplegic receptor signalling pathway GO:0008101 biological_process owl:Class GO:0044494 biolink:NamedThing envenomation resulting in positive regulation of voltage-gated sodium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant activation or increase in the activity of the activity of a voltage-gated sodium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T01:29:25Z biological_process owl:Class GO:0044492 biolink:NamedThing envenomation resulting in modulation of voltage-gated sodium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of a voltage-gated sodium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T01:23:04Z biological_process owl:Class GO:0099034 biolink:NamedThing anchored component of postsynaptic endosome membrane The component of the postsynaptic endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031225 biolink:NamedThing anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl anchored to membrane cellular_component owl:Class GO:2000185 biolink:NamedThing regulation of phosphate transmembrane transport Any process that modulates the frequency, rate or extent of phosphate transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of phosphate membrane transport vw 2010-10-15T11:33:04Z biological_process owl:Class GO:0001662 biolink:NamedThing behavioral fear response An acute behavioral change resulting from a perceived external threat. tmpzr1t_l9r_go_relaxed.owl behavioural fear response biological_process owl:Class GO:0042596 biolink:NamedThing fear response The response of an organism to a perceived external threat. tmpzr1t_l9r_go_relaxed.owl physiological fear response GO:0001663 biological_process owl:Class GO:1902993 biolink:NamedThing positive regulation of amyloid precursor protein catabolic process Any process that activates or increases the frequency, rate or extent of amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of amyloid precursor protein catabolic process|activation of amyloid precursor protein breakdown|up regulation of APP catabolic process|up-regulation of amyloid precursor protein degradation|positive regulation of APP catabolism|activation of amyloid precursor protein degradation|upregulation of APP catabolism|upregulation of APP catabolic process|upregulation of amyloid precursor protein catabolic process|up-regulation of APP catabolism|positive regulation of APP catabolic process|up regulation of amyloid precursor protein catabolism|up-regulation of amyloid precursor protein catabolic process|up regulation of APP catabolism|up-regulation of amyloid precursor protein catabolism|upregulation of amyloid precursor protein breakdown|positive regulation of amyloid precursor protein catabolism|activation of APP catabolism|activation of APP catabolic process|positive regulation of amyloid precursor protein breakdown|up-regulation of APP catabolic process|positive regulation of amyloid precursor protein degradation|up-regulation of amyloid precursor protein breakdown|up regulation of amyloid precursor protein breakdown|activation of amyloid precursor protein catabolism|upregulation of amyloid precursor protein degradation|up regulation of amyloid precursor protein degradation|activation of amyloid precursor protein catabolic process|upregulation of amyloid precursor protein catabolism rl 2014-05-08T14:21:16Z biological_process owl:Class GO:0009193 biolink:NamedThing pyrimidine ribonucleoside diphosphate metabolic process The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside diphosphate metabolism biological_process owl:Class GO:0099012 biolink:NamedThing neuronal dense core vesicle membrane The lipid bilayer surrounding a neuronal dense core vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032127 biolink:NamedThing dense core granule membrane The lipid bilayer surrounding a dense core granule. tmpzr1t_l9r_go_relaxed.owl dense core vesicle membrane cellular_component owl:Class GO:0032229 biolink:NamedThing negative regulation of synaptic transmission, GABAergic Any process that stops, prevents, or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA). tmpzr1t_l9r_go_relaxed.owl down-regulation of synaptic transmission, GABAergic|inhibition of synaptic transmission, GABAergic|down regulation of synaptic transmission, GABAergic|downregulation of synaptic transmission, GABAergic biological_process owl:Class GO:0050805 biolink:NamedThing negative regulation of synaptic transmission Any process that stops, prevents, or reduces the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. tmpzr1t_l9r_go_relaxed.owl inhibition of synaptic transmission|down-regulation of synaptic transmission|downregulation of synaptic transmission|down regulation of synaptic transmission biological_process owl:Class GO:0051048 biolink:NamedThing negative regulation of secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of a substance from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl downregulation of secretion|inhibition of secretion|down-regulation of secretion|down regulation of secretion biological_process owl:Class GO:1905127 biolink:NamedThing negative regulation of axo-dendritic protein transport Any process that stops, prevents or reduces the frequency, rate or extent of axo-dendritic protein transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of axonal protein transport|down regulation of axonal protein transport|inhibition of axonal protein transport|downregulation of axonal protein transport|down regulation of axo-dendritic protein transport|downregulation of axo-dendritic protein transport|inhibition of axo-dendritic protein transport|down-regulation of axo-dendritic protein transport|negative regulation of axonal protein transport sl 2016-04-11T20:38:40Z biological_process owl:Class GO:1905126 biolink:NamedThing regulation of axo-dendritic protein transport Any process that modulates the frequency, rate or extent of axo-dendritic protein transport. tmpzr1t_l9r_go_relaxed.owl regulation of axonal protein transport sl 2016-04-11T20:38:31Z biological_process owl:Class GO:0032013 biolink:NamedThing negative regulation of ARF protein signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of ARF protein signal transduction. tmpzr1t_l9r_go_relaxed.owl inhibition of ARF protein signal transduction|downregulation of ARF protein signal transduction|down-regulation of ARF protein signal transduction|down regulation of ARF protein signal transduction biological_process owl:Class GO:0046580 biolink:NamedThing negative regulation of Ras protein signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction. tmpzr1t_l9r_go_relaxed.owl down regulation of Ras protein signal transduction|down-regulation of Ras protein signal transduction|inhibition of Ras protein signal transduction|downregulation of Ras protein signal transduction biological_process owl:Class GO:1901568 biolink:NamedThing fatty acid derivative metabolic process The chemical reactions and pathways involving fatty acid derivative. tmpzr1t_l9r_go_relaxed.owl fatty acid derivative metabolism pr 2012-11-04T17:13:36Z biological_process owl:Class GO:0048070 biolink:NamedThing regulation of developmental pigmentation Any process that modulates the frequency, rate or extent of the developmental process that results in the deposition of coloring matter in an organism. tmpzr1t_l9r_go_relaxed.owl regulation of pigmentation during development biological_process owl:Class GO:1903333 biolink:NamedThing negative regulation of protein folding Any process that stops, prevents or reduces the frequency, rate or extent of protein folding. tmpzr1t_l9r_go_relaxed.owl inhibition of protein folding|downregulation of protein complex assembly, multichaperone pathway|negative regulation of co-chaperone activity|inhibition of co-chaperone activity|inhibition of co-chaperonin activity|downregulation of protein folding|down-regulation of co-chaperonin activity|down regulation of alpha-tubulin folding|down-regulation of non-chaperonin molecular chaperone ATPase activity|negative regulation of chaperonin ATPase activity|negative regulation of chaperone activity|down-regulation of alpha-tubulin folding|down regulation of chaperonin-mediated tubulin folding|inhibition of beta-tubulin folding|down-regulation of co-chaperone activity|down regulation of co-chaperonin activity|down regulation of protein complex assembly, multichaperone pathway|down regulation of beta-tubulin folding|negative regulation of protein complex assembly, multichaperone pathway|inhibition of non-chaperonin molecular chaperone ATPase activity|down regulation of co-chaperone activity|down-regulation of protein folding|negative regulation of alpha-tubulin folding|downregulation of alpha-tubulin folding|down regulation of chaperone activity|down regulation of protein folding|inhibition of chaperone activity|downregulation of chaperonin ATPase activity|downregulation of co-chaperone activity|downregulation of non-chaperonin molecular chaperone ATPase activity|inhibition of protein complex assembly, multichaperone pathway|negative regulation of non-chaperonin molecular chaperone ATPase activity|inhibition of chaperonin ATPase activity|downregulation of chaperone activity|negative regulation of chaperonin-mediated tubulin folding|downregulation of chaperonin-mediated tubulin folding|inhibition of chaperonin-mediated tubulin folding|down regulation of non-chaperonin molecular chaperone ATPase activity|down-regulation of beta-tubulin folding|down-regulation of protein complex assembly, multichaperone pathway|inhibition of alpha-tubulin folding|downregulation of glycoprotein-specific chaperone activity|negative regulation of glycoprotein-specific chaperone activity|down-regulation of chaperonin ATPase activity|inhibition of glycoprotein-specific chaperone activity|down-regulation of glycoprotein-specific chaperone activity|negative regulation of beta-tubulin folding|down-regulation of chaperone activity|down-regulation of chaperonin-mediated tubulin folding|down regulation of glycoprotein-specific chaperone activity|downregulation of beta-tubulin folding|negative regulation of co-chaperonin activity|down regulation of chaperonin ATPase activity|downregulation of co-chaperonin activity vw 2014-08-18T13:14:42Z biological_process owl:Class GO:0015782 biolink:NamedThing CMP-N-acetylneuraminate transmembrane transport The directed movement of CMP-N-acetylneuraminate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate transport|CMP-sialic acid transport biological_process owl:Class GO:0097183 biolink:NamedThing protein C inhibitor-coagulation factor XI complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor XI (F11); formation of the complex inhibits the serine protease activity of coagulation factor XI. tmpzr1t_l9r_go_relaxed.owl protein C inhibitor-F11 complex|PCI-coagulation factor XI complex|SERPINA5-coagulation factor XI complex|serpin A5-coagulation factor XI complex|plasma serine protease inhibitor-coagulation factor XI complex pr 2011-10-16T09:03:22Z cellular_component owl:Class GO:0097180 biolink:NamedThing serine protease inhibitor complex A heterodimeric protein complex that contains a serine protease inhibitor and a protease; formation of the complex inhibits serine protease activity. tmpzr1t_l9r_go_relaxed.owl serine-type endopeptidase inhibitor complex|serpin complex pr 2011-10-16T08:55:17Z cellular_component owl:Class GO:1990798 biolink:NamedThing pancreas regeneration The regrowth of a destroyed pancreas. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-10T22:53:53Z biological_process owl:Class GO:0031100 biolink:NamedThing animal organ regeneration The regrowth of a lost or destroyed animal organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007278 biolink:NamedThing pole cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a pole cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904565 biolink:NamedThing response to 1-oleoyl-sn-glycerol 3-phosphate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-oleoyl-sn-glycerol 3-phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl response to oleoyl lysophosphatidic acid|response to lysophosphatidic acid|response to LPA|response to 1-oleoyl lysophosphatidic acid|response to oleoyl-L-alpha-lysophosphatidic acid sl 2015-08-19T15:36:48Z biological_process owl:Class GO:0046683 biolink:NamedThing response to organophosphorus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors. tmpzr1t_l9r_go_relaxed.owl organophosphorus susceptibility/resistance|organophosphorus resistance biological_process owl:Class GO:1900930 biolink:NamedThing negative regulation of L-tyrosine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-tyrosine import into the cell. tmpzr1t_l9r_go_relaxed.owl inhibition of L-tyrosine import|inhibition of L-tyrosine uptake|downregulation of L-tyrosine import|downregulation of L-tyrosine uptake|down regulation of L-tyrosine import|down regulation of L-tyrosine uptake|down-regulation of L-tyrosine import|negative regulation of L-tyrosine uptake|negative regulation of L-tyrosine import|down-regulation of L-tyrosine uptake al 2012-06-13T07:43:14Z biological_process owl:Class GO:1900929 biolink:NamedThing regulation of L-tyrosine import across plasma membrane Any process that modulates the frequency, rate or extent of L-tyrosine import into the cell. tmpzr1t_l9r_go_relaxed.owl regulation of L-tyrosine uptake|regulation of L-tyrosine import al 2012-06-13T07:42:52Z biological_process owl:Class GO:2001309 biolink:NamedThing gliotoxin catabolic process The chemical reactions and pathways resulting in the breakdown of the epipolythiodioxopiperazine gliotoxin, a poisonous substance produced by some species of fungi. tmpzr1t_l9r_go_relaxed.owl gliotoxin breakdown|gliotoxin catabolism|gliotoxin degradation pr 2012-03-15T03:42:14Z biological_process owl:Class GO:0008999 biolink:NamedThing ribosomal-protein-alanine N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + ribosomal-protein L-alanine = CoA + ribosomal-protein N-acetyl-L-alanine. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:ribosomal-protein-L-alanine N-acetyltransferase activity|ribosomal protein S18 acetyltransferase activity EC:2.3.1.267|MetaCyc:2.3.1.128-RXN molecular_function owl:Class GO:0004596 biolink:NamedThing peptide alpha-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide. This reaction is the acetylation of the N-terminal amino acid residue of a peptide or protein. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:peptide alpha-N-acetyltransferase activity|amino-terminal amino acid-acetylating enzyme activity|NAT activity|acetyl-CoA:peptide nalpha-acetyltransferase activity|protein N-terminal acetyltransferase activity|N(alpha)-acetyltransferase activity|beta-endorphin acetyltransferase activity|nalpha-acetyltransferase activity|peptide acetyltransferase activity MetaCyc:PEPTIDE-ALPHA-N-ACETYLTRANSFERASE-RXN|Reactome:R-HSA-6814090 molecular_function owl:Class GO:0070489 biolink:NamedThing T cell aggregation The adhesion of one T cell to one or more other T cells via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl T-cell aggregation|T lymphocyte aggregation|T-lymphocyte aggregation biological_process owl:Class GO:0071593 biolink:NamedThing lymphocyte aggregation The adhesion of one lymphocyte to one or more other lymphocytes via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-29T01:37:30Z biological_process owl:Class GO:0072300 biolink:NamedThing positive regulation of metanephric glomerulus development Any process that increases the rate, frequency or extent of metanephric glomerulus development, the progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0008137 biolink:NamedThing NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + ubiquinone + 5 H(+)(in) <=> NAD(+) + ubiquinol + 4 H(+)(out). tmpzr1t_l9r_go_relaxed.owl NADH coenzyme Q1 reductase activity|electron transfer complex I activity|NADH-Q6 oxidoreductase activity|NADH-coenzyme Q reductase activity|ubiquinone reductase activity|DPNH-coenzyme Q reductase activity|NADH-CoQ oxidoreductase activity|NADH-ubiquinone oxidoreductase activity|NADH-ubiquinone reductase activity|mitochondrial electron transport complex I activity|complex I (electron transport chain) activity|NADH-coenzyme Q oxidoreductase activity|NADH-CoQ reductase activity|NADH:ubiquinone oxidoreductase activity|reduced nicotinamide adenine dinucleotide-coenzyme Q reductase activity|NADH-ubiquinone-1 reductase activity|coenzyme Q reductase activity|dihydronicotinamide adenine dinucleotide-coenzyme Q reductase activity|NADH:ubiquinone oxidoreductase complex activity|complex 1 dehydrogenase activity|DPNH-ubiquinone reductase activity|complex I (NADH:Q1 oxidoreductase) activity|mitochondrial electron transport complex 1 activity|type 1 dehydrogenase activity|complex I (mitochondrial electron transport) activity https://github.com/geneontology/go-ontology/issues/20616|https://github.com/geneontology/go-ontology/issues/21275 Reactome:R-HSA-163217|MetaCyc:NADH-DEHYDROG-A-RXN|MetaCyc:RXN0-5330|EC:7.1.1.2|RHEA:29091 molecular_function owl:Class GO:0050136 biolink:NamedThing NADH dehydrogenase (quinone) activity Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol. tmpzr1t_l9r_go_relaxed.owl NADH-quinone oxidoreductase activity|reduced nicotinamide adenine dinucleotide (quinone) dehydrogenase activity|DPNH-menadione reductase activity|D-diaphorase activity|NADH:(quinone-acceptor) oxidoreductase activity RHEA:46160|MetaCyc:NADH-DEHYDROGENASE-QUINONE-RXN|EC:1.6.5.11 molecular_function owl:Class GO:0046726 biolink:NamedThing positive regulation by virus of viral protein levels in host cell Any process where the infecting virus increases the levels of viral proteins in a cell. tmpzr1t_l9r_go_relaxed.owl up regulation of viral protein levels in host cell|upregulation of viral protein levels in host cell|positive regulation of viral protein levels|up-regulation of viral protein levels in host cell|activation of viral protein levels in host cell|stimulation of viral protein levels in host cell biological_process owl:Class GO:0046719 biolink:NamedThing regulation by virus of viral protein levels in host cell Any virus-mediated process that modulates the levels of viral proteins in a cell. tmpzr1t_l9r_go_relaxed.owl regulation of viral protein levels biological_process owl:Class GO:1990131 biolink:NamedThing Gtr1-Gtr2 GTPase complex A heterodimer GTPase complex. In S. cerevisiae, this complex contains Gtr1p and Gtr2p proteins. tmpzr1t_l9r_go_relaxed.owl rb 2013-06-25T20:39:16Z cellular_component owl:Class GO:0044271 biolink:NamedThing cellular nitrogen compound biosynthetic process The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl nitrogen compound synthesis|nitrogen compound biosynthesis|nitrogen compound anabolism|nitrogen compound formation biological_process owl:Class GO:0034641 biolink:NamedThing cellular nitrogen compound metabolic process The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular nitrogen compound metabolism biological_process owl:Class GO:0043937 biolink:NamedThing regulation of sporulation Any process that modulates the frequency, rate or extent of sporulation, the process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050793 biolink:NamedThing regulation of developmental process Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018554 biolink:NamedThing 1,2-dihydroxynaphthalene dioxygenase activity Catalysis of the reaction: 1,2-dihydroxynaphthalene + O2 = 2-hydroxychromene-2-carboxylate. C6 of the substrate molecular may have an NH2 group attached. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.56|RHEA:27310|UM-BBD_enzymeID:e0255 molecular_function owl:Class GO:0051213 biolink:NamedThing dioxygenase activity Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-112121|Reactome:R-HSA-112125|Reactome:R-HSA-112120|Reactome:R-HSA-112124 molecular_function owl:Class GO:1901466 biolink:NamedThing regulation of ferulate catabolic process Any process that modulates the frequency, rate or extent of ferulate catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ferulate breakdown|regulation of ferulate catabolism|regulation of ferulate degradation tt 2012-10-02T14:37:29Z biological_process owl:Class GO:0010565 biolink:NamedThing regulation of cellular ketone metabolic process Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004355 biolink:NamedThing glutamate synthase (NADPH) activity Catalysis of the reaction: 2 L-glutamate + NADP(+) = 2-oxoglutarate + L-glutamine + H(+) + NADPH. This is a two-step reaction: (a) L-glutamate + NH3 = L-glutamine + H2O, (b) L-glutamate + NADP+ + H2O = NH3 + 2-oxoglutarate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl glutamate (reduced nicotinamide adenine dinucleotide phosphate) synthase activity|GOGAT activity|glutamine-ketoglutaric aminotransferase activity|NADPH-linked glutamate synthase|L-glutamate:NADP+ oxidoreductase (transaminating)|L-glutamate synthase activity|NADPH-dependent glutamate synthase activity|NADPH GOGAT|L-glutamate synthetase activity|glutamine amide-2-oxoglutarate aminotransferase (oxidoreductase, NADP) activity|L-glutamine:2-oxoglutarate aminotransferase, NADPH oxidizing activity|glutamate synthetase (NADP) activity|NADPH-glutamate synthase activity MetaCyc:GLUGLNSYN-PWY|KEGG_REACTION:R00114|MetaCyc:GLUTSYN-PWY|EC:1.4.1.13|RHEA:15501|MetaCyc:GLUTAMATESYN-RXN Note that this term has a MetaCyc pathway reference as the pathway only has a single step. molecular_function owl:Class GO:0045181 biolink:NamedThing glutamate synthase activity, NAD(P)H as acceptor Catalysis of the reaction: 2 L-glutamate + NAD(P)+ = L-glutamine + 2-oxoglutarate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl glutamate synthase activity, NADH or NADPH as acceptor molecular_function owl:Class GO:0016874 biolink:NamedThing ligase activity Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient. tmpzr1t_l9r_go_relaxed.owl synthetase activity https://github.com/geneontology/go-ontology/issues/19380 EC:6.-.-.- molecular_function owl:Class GO:0006587 biolink:NamedThing serotonin biosynthetic process from tryptophan The chemical reactions and pathways resulting in the formation from tryptophan of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. tmpzr1t_l9r_go_relaxed.owl serotonin anabolism from tryptophan|serotonin formation from tryptophan|serotonin synthesis from tryptophan biological_process owl:Class GO:0006568 biolink:NamedThing tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl tryptophan metabolism Wikipedia:Tryptophan biological_process owl:Class GO:0006742 biolink:NamedThing NADP catabolic process The chemical reactions and pathways resulting in the breakdown of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; catabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. tmpzr1t_l9r_go_relaxed.owl NADP (oxidized) catabolic process|NADP degradation|nicotinamide adenine dinucleotide phosphate catabolism|reduced nicotinamide adenine dinucleotide phosphate catabolism|oxidized NADP catabolism|nicotinamide adenine dinucleotide phosphate catabolic process|reduced NADP catabolic process|NADP (oxidized) catabolism|reduced NADP catabolism|oxidized nicotinamide adenine dinucleotide phosphate catabolic process|NADP breakdown|oxidized nicotinamide adenine dinucleotide phosphate catabolism|NADP (reduced) catabolism|NADPH catabolic process|NADP (reduced) catabolic process|NADP catabolism|reduced nicotinamide adenine dinucleotide phosphate catabolic process|NADPH catabolism|oxidized NADP catabolic process biological_process owl:Class GO:0019364 biolink:NamedThing pyridine nucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. tmpzr1t_l9r_go_relaxed.owl pyridine nucleotide breakdown|pyridine nucleotide catabolism|pyridine nucleotide degradation biological_process owl:Class GO:0005813 biolink:NamedThing centrosome A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Centrosome cellular_component owl:Class GO:0005815 biolink:NamedThing microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides. tmpzr1t_l9r_go_relaxed.owl microtubule organising centre|MTOC Wikipedia:Microtubule_organizing_center cellular_component owl:Class GO:0036460 biolink:NamedThing cellular response to cell envelope stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stress acting at the cell envelope. tmpzr1t_l9r_go_relaxed.owl envelope stress response bf 2014-01-08T15:15:50Z biological_process owl:Class GO:0033554 biolink:NamedThing cellular response to stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:2000272 biolink:NamedThing negative regulation of signaling receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of signalling receptor activity|negative regulation of receptor activity bf 2010-12-02T09:28:47Z biological_process owl:Class GO:0010469 biolink:NamedThing regulation of signaling receptor activity Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl regulation of receptor activity|regulation of signalling receptor activity biological_process owl:Class GO:1904642 biolink:NamedThing cellular response to dinitrophenol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dinitrophenol stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to dinitrophenols sl 2015-08-31T20:13:18Z biological_process owl:Class GO:1904641 biolink:NamedThing response to dinitrophenol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dinitrophenol stimulus. tmpzr1t_l9r_go_relaxed.owl response to dinitrophenols sl 2015-08-31T20:13:12Z biological_process owl:Class GO:0005543 biolink:NamedThing phospholipid binding Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900740 biolink:NamedThing positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis|activation of protein insertion into mitochondrial membrane during induction of apoptosis|up regulation of protein insertion into mitochondrial membrane involved in induction of apoptosis|upregulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis|up regulation of protein insertion into mitochondrial membrane during induction of apoptosis|upregulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway|up-regulation of protein insertion into mitochondrial membrane during induction of apoptosis|up-regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway|up regulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis|activation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway|up regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway|positive regulation of protein insertion into mitochondrial membrane involved in induction of apoptosis|activation of protein insertion into mitochondrial membrane involved in induction of apoptosis|upregulation of protein insertion into mitochondrial membrane involved in induction of apoptosis|activation of protein insertion into mitochondrion membrane during induction of apoptosis|upregulation of protein insertion into mitochondrial membrane during induction of apoptosis|up regulation of protein insertion into mitochondrion membrane during induction of apoptosis|up-regulation of protein insertion into mitochondrial membrane involved in induction of apoptosis|activation of insertion of proteins into mitochondrial membranes during the induction of apoptosis|up-regulation of protein insertion into mitochondrion membrane during induction of apoptosis|positive regulation of protein insertion into mitochondrial membrane during induction of apoptosis|positive regulation of protein insertion into mitochondrion membrane during induction of apoptosis|up-regulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis|upregulation of protein insertion into mitochondrion membrane during induction of apoptosis pr 2012-05-28T02:28:40Z biological_process owl:Class GO:1905477 biolink:NamedThing positive regulation of protein localization to membrane Any process that activates or increases the frequency, rate or extent of protein localization to membrane. tmpzr1t_l9r_go_relaxed.owl up regulation of protein localization to membrane|up regulation of protein localization in membrane|up-regulation of protein localization to membrane|upregulation of protein localization to membrane|upregulation of protein localization in membrane|up-regulation of protein localisation in membrane|upregulation of protein localisation in membrane|activation of protein localisation in membrane|up regulation of protein localisation in membrane|up-regulation of protein localization in membrane|positive regulation of protein localisation in membrane|activation of protein localization to membrane|positive regulation of protein localization in membrane|activation of protein localization in membrane bc 2016-09-21T16:20:18Z biological_process owl:Class GO:0097062 biolink:NamedThing dendritic spine maintenance The organization process that preserves a dendritic spine in a stable functional or structural state. A dendritic spine is a specialized protrusion from a neuronal dendrite and is involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-07T11:29:03Z biological_process owl:Class GO:0097061 biolink:NamedThing dendritic spine organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a dendritic spine. A dendritic spine is a specialized protrusion from a neuronal dendrite and is involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dendritic spine organisation pr 2011-06-07T11:26:53Z biological_process owl:Class GO:0043922 biolink:NamedThing negative regulation by host of viral transcription Any process in which a host organism stops, prevents, or reduces the frequency, rate or extent of viral transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of viral transcription by host biological_process owl:Class GO:0051851 biolink:NamedThing modulation by host of symbiont process The process in which an organism effects a change in the structure or processes of a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by host of symbiont morphology or physiology biological_process owl:Class GO:0016117 biolink:NamedThing carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. tmpzr1t_l9r_go_relaxed.owl carotenoid formation|carotenoid anabolism|carotenoid biosynthesis|carotenoid synthesis MetaCyc:CAROTENOID-PWY biological_process owl:Class GO:0016109 biolink:NamedThing tetraterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. tmpzr1t_l9r_go_relaxed.owl tetraterpenoid biosynthesis|tetraterpene biosynthetic process|tetraterpene biosynthesis|tetraterpenoid anabolism|tetraterpenoid synthesis|tetraterpenoid formation biological_process owl:Class GO:0090214 biolink:NamedThing spongiotrophoblast layer developmental growth The increase in size or mass of the spongiotrophoblast layer of the placenta where the increase in size or mass contributes to the progression of that layer over time from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-08T12:10:44Z biological_process owl:Class GO:0075262 biolink:NamedThing negative regulation of spore-bearing organ development Any process that stops, prevents, or reduces the frequency, rate or extent of spore-bearing organ development, a process in which hyphae grow into special aggregates called fruiting bodies that produce new spores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051091 biolink:NamedThing positive regulation of DNA-binding transcription factor activity Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription. tmpzr1t_l9r_go_relaxed.owl positive regulation of thyroid hormone receptor activity|upregulation of transcription factor activity|activation of transcription factor activity|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor activity|positive regulation of DNA binding transcription factor activity|up regulation of transcription factor activity|stimulation of transcription factor activity|up-regulation of transcription factor activity rph 2015-04-22T12:22:16Z GO:1904169 biological_process owl:Class GO:0015360 biolink:NamedThing acetate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: acetate(out) + H+(out) = acetate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl acetate:hydrogen symporter activity|hydrogen:acetate symporter activity GO:0015357 molecular_function owl:Class GO:0043893 biolink:NamedThing acetate:cation symporter activity Enables the transfer of acetate from one side of a membrane to the other according to the reaction: acetate(out) + cation(out) = acetate(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl cation:acetate symporter activity|cation/acetate symporter activity|acetate/cation symporter activity|ActP|acetate permease|cation-acetate symporter activity|acetate-cation symporter activity molecular_function owl:Class GO:0051740 biolink:NamedThing ethylene binding Binding to ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. tmpzr1t_l9r_go_relaxed.owl ethene binding molecular_function owl:Class GO:0072328 biolink:NamedThing alkene binding Binding to an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-02T12:39:40Z molecular_function owl:Class GO:0150007 biolink:NamedThing clathrin-dependent synaptic vesicle endocytosis Clathrin-dependent endocytosis of presynaptic membrane regions comprising synaptic vesicles' membrane constituents. This is a relatively slow process occurring in the range of tens of seconds. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-01T10:11:35Z biological_process owl:Class GO:0072583 biolink:NamedThing clathrin-dependent endocytosis An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles. tmpzr1t_l9r_go_relaxed.owl clathrin-mediated endocytosis|clathrin coated pit-dependent endocytosis|CME mah 2011-02-08T03:59:18Z biological_process owl:Class GO:0001912 biolink:NamedThing positive regulation of leukocyte mediated cytotoxicity Any process that activates or increases the frequency, rate or extent of leukocyte mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl up-regulation of leukocyte mediated cytotoxicity|positive regulation of immune cell mediated cytotoxicity|activation of leukocyte mediated cytotoxicity|positive regulation of leucocyte mediated cytotoxicity|upregulation of leukocyte mediated cytotoxicity|stimulation of leukocyte mediated cytotoxicity|up regulation of leukocyte mediated cytotoxicity biological_process owl:Class GO:1901999 biolink:NamedThing homogentisate metabolic process The chemical reactions and pathways involving homogentisate. tmpzr1t_l9r_go_relaxed.owl homogentisate metabolism tb 2013-03-21T00:01:02Z biological_process owl:Class GO:0090240 biolink:NamedThing positive regulation of histone H4 acetylation Any process that increases the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-20T03:48:09Z biological_process owl:Class GO:1901792 biolink:NamedThing 3-(2,3-dihydroxyphenyl)propanoate biosynthetic process The chemical reactions and pathways resulting in the formation of 3-(2,3-dihydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(2,3-dihydroxyphenyl)propanoate synthesis|3-(2,3-dihydroxyphenyl)propanoate formation|3-(2,3-dihydroxyphenyl)propanoate anabolism|3-(2,3-dihydroxyphenyl)propanoate biosynthesis yaf 2013-01-16T11:41:06Z biological_process owl:Class GO:0009713 biolink:NamedThing catechol-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of catechol-containing compounds. Catechol is a compound containing a pyrocatechol nucleus or substituent. tmpzr1t_l9r_go_relaxed.owl catechol biosynthesis|catechol biosynthetic process|catechol formation|catechol anabolism|catechol synthesis biological_process owl:Class GO:0010374 biolink:NamedThing stomatal complex development The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010443 biolink:NamedThing meristemoid mother cell division The asymmetric cell division by which a meristemoid mother cells (MMC) give rise to a meristemoid and another cell. The other cell may itself become a MMC or may generate an epidermal cell. Any cell that undergoes this type of division is a MMC. tmpzr1t_l9r_go_relaxed.owl meristemoid division biological_process owl:Class GO:0000911 biolink:NamedThing cytokinesis by cell plate formation The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033860 biolink:NamedThing regulation of NAD(P)H oxidase activity Any process that modulates the activity of the enzyme NAD(P)H oxidase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051341 biolink:NamedThing regulation of oxidoreductase activity Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. tmpzr1t_l9r_go_relaxed.owl oxidoreductase regulator biological_process owl:Class GO:0048686 biolink:NamedThing regulation of sprouting of injured axon Any process that modulates the frequency, rate or extent of sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022603 biolink:NamedThing regulation of anatomical structure morphogenesis Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of morphogenesis biological_process owl:Class GO:0042832 biolink:NamedThing defense response to protozoan Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl defence response to pathogenic protozoa|defence response to protozoa|resistance response to pathogenic protozoan|defence response to protozoon|defense response to protozoon|resistance response to pathogenic protozoa|defense response to pathogenic protozoa|defense response to protozoa|defense response to protozoan, incompatible interaction GO:0009818 biological_process owl:Class GO:0098542 biolink:NamedThing defense response to other organism Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism. tmpzr1t_l9r_go_relaxed.owl resistance response to pathogen|defense response, incompatible interaction|defence response incompatible interaction|defence response to pathogen, incompatible interaction https://github.com/geneontology/go-ontology/issues/22173 dos 2013-11-11T12:59:11Z GO:0009814 biological_process owl:Class GO:0062248 biolink:NamedThing cleistothecium formation The process of producing a cleistothecium, a closed sexual fruiting body that contains ascospores in linear asci. Cleistothecia are present in some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella. tmpzr1t_l9r_go_relaxed.owl dph 2020-05-08T16:14:06Z biological_process owl:Class GO:2000615 biolink:NamedThing regulation of histone H3-K9 acetylation Any process that modulates the frequency, rate or extent of histone H3-K9 acetylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3K9 acetylation|regulation of histone H3 acetylation at K9 vk 2011-04-18T03:15:59Z biological_process owl:Class GO:0035065 biolink:NamedThing regulation of histone acetylation Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061439 biolink:NamedThing kidney vasculature morphogenesis The process in which the kidney vasculature is generated and organized. Morphogenesis pertains to the creation of form. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-08T12:30:11Z biological_process owl:Class GO:0030218 biolink:NamedThing erythrocyte differentiation The process in which a myeloid precursor cell acquires specializes features of an erythrocyte. tmpzr1t_l9r_go_relaxed.owl erythropoiesis|RBC differentiation|erythrocyte cell differentiation|red blood cell differentiation Wikipedia:Erythropoiesis biological_process owl:Class GO:0030099 biolink:NamedThing myeloid cell differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106307 biolink:NamedThing protein threonine phosphatase activity Catalysis of the reaction: protein threonine phosphate + H2O = protein threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl EC:3.1.3.16|RHEA:47004 hjd 2020-09-09T19:38:50Z molecular_function owl:Class GO:0004722 biolink:NamedThing protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl casein phosphatase|phosphatase III|phosphopyruvate dehydrogenase phosphatase|protein phosphatase type 4 activity|polycation modulated (PCM-) phosphatase|phosphospectrin phosphatase|phosphatase SP|magnesium-dependent protein serine/threonine phosphatase activity|calcineurin|phosphatase C-II|protein phosphatase type 2A, intrinsic catalyst activity|phosphatase 2A|protein phosphatase X|phosphatase IV|phosphatase IB|phosphatase 2B|branched-chain alpha-keto acid dehydrogenase phosphatase|protein D phosphatase|protein phosphatase type 2C activity|phosphatase H-II|phosphatase I|protein phosphatase type 2A activity|BCKDH phosphatase|protein phosphatase type 1 activity|Aspergillus awamori acid protein phosphatase|protein phosphatase type 4, intrinsic catalyst activity|protein phosphatase type 2B, intrinsic catalyst activity|protein phosphatase type 2B activity|serine/threonine specific protein phosphatase activity|protein phosphatase type 1, intrinsic catalyst activity|HMG-CoA reductase phosphatase|phosphatase II|3-hydroxy 3-methylglutaryl coenzymeA reductase phosphatase Reactome:R-HSA-2187401|Reactome:R-HSA-9619449|Reactome:R-HSA-5672961|Reactome:R-HSA-9660538|Reactome:R-HSA-9686524|Reactome:R-HSA-5683405|Reactome:R-HSA-5693153|Reactome:R-HSA-1638821|Reactome:R-HSA-4419948|Reactome:R-HSA-5675433|Reactome:R-HSA-5675431|Reactome:R-HSA-9660536|Reactome:R-HSA-5687758|Reactome:R-HSA-3002811|Reactome:R-HSA-6811504|Reactome:R-HSA-5694421|Reactome:R-HSA-4088141|Reactome:R-HSA-9619430|Reactome:R-HSA-2995388|EC:3.1.3.16|Reactome:R-HSA-8948139|Reactome:R-HSA-1295632|Reactome:R-HSA-429730|Reactome:R-HSA-3601585|Reactome:R-HSA-5679206|Reactome:R-HSA-201790|Reactome:R-HSA-74948|Reactome:R-HSA-9658445|Reactome:R-HSA-199425|Reactome:R-HSA-5672957|Reactome:R-HSA-5692754|Reactome:R-HSA-201787|Reactome:R-HSA-199959|Reactome:R-HSA-163568|Reactome:R-HSA-380949|Reactome:R-HSA-6792863|Reactome:R-HSA-9619467|Reactome:R-HSA-209055 GO:0030361|GO:0030358|GO:0015071|GO:0030357|GO:0008600|GO:0030360|GO:0000158|GO:0008598|GO:0000163|GO:0004724 molecular_function owl:Class GO:0030747 biolink:NamedThing indolepyruvate C-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (indol-3-yl)pyruvate = S-adenosyl-L-homocysteine + (S)-3-(indol-3-yl)-2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl indolepyruvic acid methyltransferase activity|S-adenosyl-L-methionine:(indol-3-yl)pyruvate C-methyltransferase activity|S-adenosyl-L-methionine:indolepyruvate C-methyltransferase activity|indolepyruvate methyltransferase activity|indolepyruvate 3-methyltransferase activity RHEA:12112|EC:2.1.1.47|MetaCyc:INDOLEPYRUVATE-C-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0008839 biolink:NamedThing 4-hydroxy-tetrahydrodipicolinate reductase Catalysis of the reaction: (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl dihydrodipicolinate reductase activity|dihydrodipicolinic acid reductase activity|2,3,4,5-tetrahydrodipicolinate:NAD(P)+ oxidoreductase activity EC:1.17.1.8|MetaCyc:DIHYDROPICRED-RXN molecular_function owl:Class GO:0045709 biolink:NamedThing negative regulation of adult salivary gland boundary specification Any process that stops, prevents, or reduces the frequency, rate or extent of salivary gland determination in an adult organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of adult salivary gland determination|down regulation of adult salivary gland determination|downregulation of adult salivary gland determination|down-regulation of adult salivary gland determination|inhibition of adult salivary gland determination biological_process owl:Class GO:0045705 biolink:NamedThing negative regulation of salivary gland boundary specification Any process that stops, prevents, or reduces the frequency, rate or extent of salivary gland determination. tmpzr1t_l9r_go_relaxed.owl downregulation of salivary gland determination|inhibition of salivary gland determination|negative regulation of salivary gland determination|down regulation of salivary gland determination|down-regulation of salivary gland determination biological_process owl:Class GO:0010143 biolink:NamedThing cutin biosynthetic process The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. tmpzr1t_l9r_go_relaxed.owl cutin anabolism|cutin biosynthesis|cutin formation|cutin synthesis MetaCyc:PWY-321 biological_process owl:Class GO:1901758 biolink:NamedThing butirosin biosynthetic process The chemical reactions and pathways resulting in the formation of butirosin. tmpzr1t_l9r_go_relaxed.owl butirosin synthesis|butirosin formation|butirosin biosynthesis|butirosin anabolism yaf 2013-01-14T11:36:27Z biological_process owl:Class GO:0000376 biolink:NamedThing RNA splicing, via transesterification reactions with guanosine as nucleophile Splicing of RNA via a series of two transesterification reactions with exogenous guanosine as the initiating nucleophile. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000375 biolink:NamedThing RNA splicing, via transesterification reactions Splicing of RNA via a series of two transesterification reactions. tmpzr1t_l9r_go_relaxed.owl spliceosomal catalysis|RNA splicing factor activity, transesterification mechanism|pre-mRNA splicing factor activity Note that nuclear mRNA, Group I, Group II, and Group III introns are all spliced by a series of two transesterification reactions that occur within the RNA itself, or between two RNAs in trans splicing. Some of these require one or more proteins to stabilize the catalytic conformation, while others are autocatalytic. Note that tRNA introns are spliced by a different catalytic mechanism. GO:0031202|GO:0000385 biological_process owl:Class GO:0061045 biolink:NamedThing negative regulation of wound healing Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:33:30Z biological_process owl:Class GO:0033783 biolink:NamedThing 25-hydroxycholesterol 7alpha-hydroxylase activity Catalysis of the reactions: cholest-5-ene-3beta,25-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,25-triol + NADP+ + H2O, and cholest-5-ene-3beta,27-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,27-triol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl CYP7B1|25-hydroxycholesterol 7alpha-monooxygenase activity|cholest-5-ene-3beta,25-diol,NADPH:oxygen oxidoreductase (7alpha-hydroxylating) activity|CYP7B1 oxysterol 7alpha-hydroxylase activity MetaCyc:RXN-7981|EC:1.14.14.29|MetaCyc:RXN-7980|RHEA:19041 molecular_function owl:Class GO:0043456 biolink:NamedThing regulation of pentose-phosphate shunt Any process that modulates the frequency, rate or extent of the pentose-phosphate shunt, the process in which glucose is oxidized, coupled to NADPH synthesis. tmpzr1t_l9r_go_relaxed.owl regulation of pentose-phosphate pathway|regulation of pentose phosphate shunt|regulation of pentose phosphate pathway biological_process owl:Class GO:0031117 biolink:NamedThing positive regulation of microtubule depolymerization Any process that activates or increases the frequency, rate or extent of microtubule depolymerization. tmpzr1t_l9r_go_relaxed.owl stimulation of microtubule depolymerization|positive regulation of microtubule disassembly|positive regulation of microtubule catastrophe|upregulation of microtubule depolymerization|microtubule destabilization|up-regulation of microtubule depolymerization|up regulation of microtubule depolymerization|activation of microtubule depolymerization biological_process owl:Class GO:0031114 biolink:NamedThing regulation of microtubule depolymerization Any process that modulates the frequency, rate or extent of microtubule depolymerization. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule disassembly biological_process owl:Class GO:0031798 biolink:NamedThing type 1 metabotropic glutamate receptor binding Binding to a type 1 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 1 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0035256 biolink:NamedThing G protein-coupled glutamate receptor binding Binding to a G protein-coupled glutamate receptor (a metabotropic glutamate receptor). tmpzr1t_l9r_go_relaxed.owl metabotropic glutamate receptor binding|G-protein coupled glutamate receptor binding molecular_function owl:Class GO:1902867 biolink:NamedThing negative regulation of retina development in camera-type eye Any process that stops, prevents or reduces the frequency, rate or extent of retina development in camera-type eye. tmpzr1t_l9r_go_relaxed.owl down regulation of retina development in camera-type eye|down-regulation of retina development in camera-type eye|down-regulation of retinal development|inhibition of retina development in camera-type eye|inhibition of retinal development|inhibition of retina development in camera-style eye|down-regulation of retina development in camera-style eye|downregulation of retinal development|downregulation of retina development in camera-style eye|negative regulation of retina development in camera-style eye|negative regulation of retinal development|down regulation of retina development in camera-style eye|downregulation of retina development in camera-type eye|down regulation of retinal development mr 2014-04-03T15:24:23Z biological_process owl:Class GO:0060372 biolink:NamedThing regulation of atrial cardiac muscle cell membrane repolarization Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in an atrial cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl regulation of atrial cardiac muscle cell repolarization|regulation of atrial cardiomyocyte membrane repolarization|atrial repolarization|electrocardiogram QRS complex biological_process owl:Class GO:0099623 biolink:NamedThing regulation of cardiac muscle cell membrane repolarization Any process that modulates the establishment or extent of a change in membrane potential in the polarizing direction towards the resting potential in a cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac muscle cell repolarization|heart repolarization|regulation of cardiomyocyte membrane repolarization biological_process owl:Class GO:0060215 biolink:NamedThing primitive hemopoiesis A first transient wave of blood cell production that, in vertebrates, gives rise to erythrocytes (red blood cells) and myeloid cells. tmpzr1t_l9r_go_relaxed.owl primitive haemopoiesis|primitive haematopoiesis|primitive hematopoiesis biological_process owl:Class GO:0009848 biolink:NamedThing indoleacetic acid biosynthetic process via tryptophan The chemical reactions and pathways resulting in the formation of indole-3-acetic acid that occurs through metabolism of L-tryptophan. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid formation via tryptophan|indoleacetic acid synthesis via tryptophan|indoleacetic acid anabolism via tryptophan|IAA biosynthetic process via tryptophan MetaCyc:PWY-581 biological_process owl:Class GO:0009684 biolink:NamedThing indoleacetic acid biosynthetic process The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants. tmpzr1t_l9r_go_relaxed.owl indole acetic acid biosynthesis|indoleacetic acid anabolism|indole acetic acid biosynthetic process|indoleacetic acid biosynthesis|indole-acetic acid biosynthetic process|indole-3-acetate biosynthesis|indoleacetic acid formation|indoleacetic acid synthesis|IAA biosynthetic process|indole-acetic acid biosynthesis|indole-3-acetate biosynthetic process biological_process owl:Class GO:1901114 biolink:NamedThing erythromycin catabolic process The chemical reactions and pathways resulting in the breakdown of erythromycin. tmpzr1t_l9r_go_relaxed.owl erythromycin degradation|erythromycin catabolism|erythromycin breakdown yaf 2012-07-11T03:06:38Z biological_process owl:Class GO:1901113 biolink:NamedThing erythromycin metabolic process The chemical reactions and pathways involving erythromycin. tmpzr1t_l9r_go_relaxed.owl erythromycin metabolism yaf 2012-07-11T03:06:13Z biological_process owl:Class GO:0048508 biolink:NamedThing embryonic meristem development The process whose specific outcome is the progression of the embryonic meristem over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048507 biolink:NamedThing meristem development The process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034755 biolink:NamedThing iron ion transmembrane transport A process in which an iron ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl transmembrane iron transport|ferrous ion transmembrane transport|iron(2+) transmembrane transport|low-affinity iron ion transmembrane transport|ferrous iron transmembrane transport|high-affinity iron ion transmembrane transport|low affinity iron ion transport|high-affinity iron ion transport|iron ion membrane transport|high-affinity ferrous ion transmembrane transport|low-affinity iron ion transport|high affinity ferrous ion transmembrane transport|high affinity iron ion transport Note that this term is not intended for use in annotating lateral movement within membranes. vw 2015-02-06T11:29:22Z GO:1903874|GO:0000040|GO:0061839|GO:0006827 biological_process owl:Class GO:0098662 biolink:NamedThing inorganic cation transmembrane transport A process in which an inorganic cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl divalent inorganic cation transport|monovalent inorganic cation transport|transmembrane inorganic cation transport|inorganic cation membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. GO:0072511|GO:0015672 biological_process owl:Class GO:0035291 biolink:NamedThing specification of segmental identity, intercalary segment The specification of the characteristic structures of the intercalary segment of the anterior head, following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'intercalary segment ; FBbt:00000010'. biological_process owl:Class GO:0007380 biolink:NamedThing specification of segmental identity, head The specification of the characteristic structures of the head segments following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050769 biolink:NamedThing positive regulation of neurogenesis Any process that activates or increases the frequency, rate or extent of neurogenesis, the generation of cells within the nervous system. tmpzr1t_l9r_go_relaxed.owl up regulation of neurogenesis|stimulation of neurogenesis|upregulation of neurogenesis|up-regulation of neurogenesis|activation of neurogenesis biological_process owl:Class GO:1903408 biolink:NamedThing positive regulation of P-type sodium:potassium-exchanging transporter activity Any process that activates or increases the frequency, rate or extent of sodium:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of sodium/potassium-exchanging ATPase activity|upregulation of ATP phosphohydrolase (Na+/K+-exchanging)|positive regulation of (Na+ + K+)-ATPase activity|positive regulation of (Na+ + K+)-activated ATPase activity|positive regulation of Na+/K+-ATPase activity|up-regulation of (Na+ + K+)-activated ATPase activity|positive regulation of Na+,K+ pump|activation of ATP phosphohydrolase (Na+/K+-exchanging)|positive regulation of Na(+)/K(+)-ATPase activity|up-regulation of sodium:potassium exchanging ATPase activity|up regulation of Na+/K+-exchanging ATPase activity|up-regulation of (Na+ + K+)-ATPase activity|up regulation of (Na+ + K+)-activated ATPase activity|activation of Na(+)/K(+)-exchanging ATPase activity|upregulation of Na+/K+-ATPase activity|upregulation of Na(+)/K(+)-exchanging ATPase activity|upregulation of Na,K-activated ATPase activity|upregulation of sodium:potassium-exchanging ATPase activity|up regulation of Na+/K+-ATPase activity|upregulation of sodium/potassium-transporting ATPase activity|up-regulation of ATP phosphohydrolase (Na+/K+-exchanging)|up regulation of Na(+)/K(+)-ATPase activity|up regulation of sodium:potassium exchanging ATPase activity|up regulation of sodium/potassium-exchanging ATPase activity|upregulation of sodium:potassium exchanging ATPase activity|up-regulation of Na+/K+-exchanging ATPase activity|activation of Na+/K+-ATPase activity|up-regulation of Na+,K+ pump|up-regulation of Na(+)/K(+)-ATPase activity|up regulation of Na,K-activated ATPase activity|activation of sodium/potassium-transporting ATPase activity|activation of (Na+ + K+)-ATPase activity|positive regulation of sodium/potassium-exchanging ATPase activity|activation of Na(+)/K(+)-ATPase activity|upregulation of Na+,K+ pump|activation of Na,K-activated ATPase activity|upregulation of Na,K-pump|up regulation of (Na+ + K+)-ATPase activity|up regulation of ATP phosphohydrolase (Na+/K+-exchanging)|positive regulation of ATP phosphohydrolase (Na+/K+-exchanging)|up-regulation of sodium:potassium-exchanging ATPase activity|upregulation of Na+/K+-exchanging ATPase activity|positive regulation of Na+/K+-exchanging ATPase activity|positive regulation of Na+,K+-ATPase activity|activation of Na+/K+-exchanging ATPase activity|up-regulation of Na,K-pump|activation of Na,K-pump|upregulation of Na(+)/K(+)-ATPase activity|up regulation of Na,K-pump|up-regulation of Na,K-activated ATPase activity|upregulation of (Na+ + K+)-activated ATPase activity|up-regulation of Na+,K+-ATPase activity|positive regulation of sodium:potassium-exchanging ATPase activity|up regulation of sodium/potassium-transporting ATPase activity|positive regulation of Na,K-activated ATPase activity|activation of sodium/potassium-exchanging ATPase activity|upregulation of (Na+ + K+)-ATPase activity|up-regulation of sodium/potassium-transporting ATPase activity|up-regulation of Na(+)/K(+)-exchanging ATPase activity|upregulation of sodium/potassium-exchanging ATPase activity|up regulation of Na+,K+-ATPase activity|up regulation of sodium:potassium-exchanging ATPase activity|activation of (Na+ + K+)-activated ATPase activity|positive regulation of sodium:potassium exchanging ATPase activity|upregulation of Na+,K+-ATPase activity|activation of sodium:potassium-exchanging ATPase activity|up-regulation of Na+/K+-ATPase activity|activation of Na+,K+ pump|up regulation of Na(+)/K(+)-exchanging ATPase activity|up regulation of Na+,K+ pump|positive regulation of sodium/potassium-transporting ATPase activity|activation of sodium:potassium exchanging ATPase activity|positive regulation of Na(+)/K(+)-exchanging ATPase activity|activation of Na+,K+-ATPase activity|positive regulation of Na,K-pump mr 2014-09-02T19:45:24Z biological_process owl:Class GO:0032781 biolink:NamedThing positive regulation of ATP-dependent activity Any process that activates or increases the rate of an ATP-dependent activity. tmpzr1t_l9r_go_relaxed.owl up regulation of ATPase activity|activation of ATPase activity|stimulation of ATPase activity|positive regulation of ATPase activity|upregulation of ATPase activity|up-regulation of ATPase activity|positive regulation of adenosinetriphosphatase activity https://github.com/geneontology/go-ontology/issues/22371 biological_process owl:Class GO:0018544 biolink:NamedThing 4-carboxy-4'-sulfoazobenzene reductase activity Catalysis of the reaction: 4-carboxy-4'-sulfoazobenzene + 4 H+ + 4 e- = 4-aminobenzoate + 4-aminobenzenesulfonate. tmpzr1t_l9r_go_relaxed.owl 4-carboxy-4'-sulphoazobenzene reductase activity UM-BBD_reactionID:r0543 molecular_function owl:Class GO:0016657 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a nitrogenous group. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor EC:1.6.6.- molecular_function owl:Class GO:0001581 biolink:NamedThing detection of chemical stimulus involved in sensory perception of sour taste The series of events required for a sour taste stimulus to be received and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of sour taste, sensory transduction of chemical stimulus|sour taste detection|sensory detection of chemical stimulus during perception of sour taste|sensory detection of sour taste|sensory transduction of sour taste|perception of sour taste, detection of chemical stimulus|sensory transduction of chemical stimulus during perception of sour taste biological_process owl:Class GO:0050912 biolink:NamedThing detection of chemical stimulus involved in sensory perception of taste The series of events involved in the perception of taste in which a gustatory chemical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of taste, sensory transduction of chemical stimulus|sensory detection of taste|taste perception|sensory transduction of taste|sensory transduction of chemical stimulus during perception of taste|perception of taste, sensory detection of chemical stimulus|sensory detection of chemical stimulus during perception of taste|perception of taste, detection of chemical stimulus biological_process owl:Class GO:2001007 biolink:NamedThing negative regulation of cellulose biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellulose formation|negative regulation of cellulose biosynthesis|negative regulation of cellulose anabolism|negative regulation of cellulose synthesis tt 2011-08-08T08:42:24Z biological_process owl:Class GO:0070727 biolink:NamedThing cellular macromolecule localization Any process in which a macromolecule is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell. tmpzr1t_l9r_go_relaxed.owl cellular macromolecule localisation mah 2009-06-16T04:08:29Z biological_process owl:Class GO:0033036 biolink:NamedThing macromolecule localization Any process in which a macromolecule is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl macromolecule localisation biological_process owl:Class GO:0030519 biolink:NamedThing snoRNP binding Binding to a small nucleolar ribonucleoprotein particle. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043021 biolink:NamedThing ribonucleoprotein complex binding Binding to a complex of RNA and protein. tmpzr1t_l9r_go_relaxed.owl ribonucleoprotein binding|RNP binding|protein-RNA complex binding molecular_function owl:Class GO:0018160 biolink:NamedThing peptidyl-pyrromethane cofactor linkage The covalent binding of a pyrromethane (dipyrrin) cofactor to protein via the sulfur atom of cysteine forming dipyrrolylmethanemethyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-pyrromethane cofactor linkage via dipyrrolylmethanemethyl-L-cysteine|dipyrromethane cofactor binding RESID:AA0252 GO:0033035|GO:0018354 biological_process owl:Class GO:0030639 biolink:NamedThing polyketide biosynthetic process The chemical reactions and pathways resulting in the formation of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones, which are themselves formed by repetitive head-to-tail addition of acetyl (or substituted acetyl) units indirectly derived from acetate (or a substituted acetate) by a mechanism similar to that for fatty acid biosynthesis but without the intermediate reductive steps. tmpzr1t_l9r_go_relaxed.owl polyketide synthesis|polyketide anabolism|polyketide biosynthesis|polyketide formation biological_process owl:Class GO:0044550 biolink:NamedThing secondary metabolite biosynthetic process The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. tmpzr1t_l9r_go_relaxed.owl secondary metabolite biosynthesis jl 2012-03-29T01:55:18Z biological_process owl:Class GO:1903670 biolink:NamedThing regulation of sprouting angiogenesis Any process that modulates the frequency, rate or extent of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl pga 2014-11-27T10:10:51Z biological_process owl:Class GO:1901420 biolink:NamedThing negative regulation of response to alcohol Any process that stops, prevents or reduces the frequency, rate or extent of response to alcohol. tmpzr1t_l9r_go_relaxed.owl downregulation of response to alcohol|down regulation of response to alcohol|inhibition of response to alcohol|down-regulation of response to alcohol tt 2012-10-01T16:53:25Z biological_process owl:Class GO:1901419 biolink:NamedThing regulation of response to alcohol Any process that modulates the frequency, rate or extent of response to alcohol. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T16:52:13Z biological_process owl:Class GO:0002893 biolink:NamedThing negative regulation of type II hypersensitivity Any process that stops, prevents, or reduces the frequency, rate, or extent of type II hypersensitivity. tmpzr1t_l9r_go_relaxed.owl down-regulation of type II hypersensitivity|inhibition of type II hypersensitivity|downregulation of type II hypersensitivity|down regulation of type II hypersensitivity biological_process owl:Class GO:0002892 biolink:NamedThing regulation of type II hypersensitivity Any process that modulates the frequency, rate, or extent of type II hypersensitivity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018245 biolink:NamedThing protein O-linked glycosylation via tyrosine The glycosylation of protein via the O4' atom of peptidyl-tyrosine, O4'-glycosyl-L-tyrosine; the carbohydrate is glucose, the origin for glycogen. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation via tyrosine RESID:AA0157 biological_process owl:Class GO:0036498 biolink:NamedThing IRE1-mediated unfolded protein response A series of molecular signals mediated by the endoplasmic reticulum stress sensor IRE1 (Inositol-requiring transmembrane kinase/endonuclease). Begins with activation of IRE1 in response to endoplasmic reticulum (ER) stress, and ends with regulation of a downstream cellular process, e.g. transcription. One target of activated IRE1 is the transcription factor HAC1 in yeast, or XBP1 in mammals; IRE1 cleaves an intron of a mRNA coding for HAC1/XBP1 to generate an activated HAC1/XBP1 transcription factor, which controls the up regulation of UPR-related genes. At least in mammals, IRE1 can also signal through additional intracellular pathways including JNK and NF-kappaB. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum unfolded protein response; IRE1 signaling|IRE1alpha unfolded protein response|IRE1 signaling in response to endoplasmic reticulum stress|ERN1-mediated unfolded protein response|UPR signaling by IRE1 stress sensor|inositol-requiring transmembrane kinase/endonuclease signal transduction|IRE1p unfolded protein response|inositol-requiring enzyme 1-mediated unfolded protein response|IRE1 signal transduction pathway|IRE1 branch of UPR Consider also annotating to 'eiF2alpha phosphorylation in response to endoplasmic reticulum stress ; GO:0036492' or its descendants. bf 2015-02-05T13:12:12Z biological_process owl:Class GO:0030968 biolink:NamedThing endoplasmic reticulum unfolded protein response The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation. tmpzr1t_l9r_go_relaxed.owl erUPR|SREBP-mediated signalling pathway|ER unfolded protein response Note that this term should not be confused with 'response to unfolded protein ; GO:0006986', which refers to any response to the presence of unfolded proteins anywhere in the cell or in multicellular organism. Also see 'ER-associated protein catabolic process ; GO:0030433'. biological_process owl:Class GO:0046792 biolink:NamedThing suppression by virus of host cell cycle arrest Viral interference in host cell processes that lead cell cycle arrest, allowing cell division to occur. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of cell cycle arrest|viral inhibition of cell cycle arrest biological_process owl:Class GO:0019055 biolink:NamedThing modification by virus of host cell cycle regulation Interactions, directly with the host cell macromolecular machinery, to allow a virus to modulate the rate of the host cell cycle to facilitate virus replication. tmpzr1t_l9r_go_relaxed.owl viral perturbation of cell cycle regulation biological_process owl:Class GO:0034320 biolink:NamedThing alcohol O-hexanoyltransferase activity Catalysis of the reaction: hexanoyl-CoA + an alcohol = CoA + a hexyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034318 biolink:NamedThing alcohol O-acyltransferase activity Catalysis of the transfer of an acyl group to an oxygen atom on an alcohol acceptor molecule. tmpzr1t_l9r_go_relaxed.owl alcohol acyltransferase activity|AEATase activity|acyl-CoA:ethanol O-acyltransferase|acyl-coenzymeA:ethanol O-acyltransferase activity|acyl-coenzymeA:alcohol O-acyltransferase activity|acyl-CoA:alcohol O-acyltransferase activity molecular_function owl:Class GO:0052904 biolink:NamedThing N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity Catalysis of the reaction: H(2)O + N(1)-acetylspermidine + O(2) = 3-acetamidopropanal + H(2)O(2) + putrescine. tmpzr1t_l9r_go_relaxed.owl non-specific polyamine oxidase activity|N(1)-acetylpolyamine oxidase activity|polyamine oxidase activity RHEA:25812|KEGG_REACTION:R09074|MetaCyc:RXN-12091|Reactome:R-HSA-141351|EC:1.5.3.17|MetaCyc:RXN-9942|Reactome:R-HSA-141348|EC:1.5.3.13 molecular_function owl:Class GO:0047007 biolink:NamedThing pregnan-21-ol dehydrogenase (NAD+) activity Catalysis of the reaction: NAD(+) + pregnan-21-ol = H(+) + NADH + pregnan-21-al. tmpzr1t_l9r_go_relaxed.owl 21-hydroxysteroid:NAD+ 21-oxidoreductase activity|21-hydroxysteroid dehydrogenase (NAD+) activity RHEA:11448|KEGG_REACTION:R03043|EC:1.1.1.150|MetaCyc:1.1.1.150-RXN molecular_function owl:Class GO:0033764 biolink:NamedThing steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP, and in which one substrate is a sterol derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900975 biolink:NamedThing negative regulation of tatiopterin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of tatiopterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of tatiopterin biosynthesis|down regulation of tatiopterin formation|down regulation of tatiopterin synthesis|down regulation of tatiopterin anabolism|down-regulation of tatiopterin formation|down regulation of tatiopterin biosynthetic process|down-regulation of tatiopterin biosynthetic process|inhibition of tatiopterin anabolism|downregulation of tatiopterin synthesis|inhibition of tatiopterin biosynthetic process|inhibition of tatiopterin biosynthesis|inhibition of tatiopterin formation|downregulation of tatiopterin biosynthetic process|inhibition of tatiopterin synthesis|down-regulation of tatiopterin biosynthesis|down regulation of tatiopterin biosynthesis|down-regulation of tatiopterin anabolism|downregulation of tatiopterin formation|down-regulation of tatiopterin synthesis|negative regulation of tatiopterin formation|downregulation of tatiopterin anabolism|negative regulation of tatiopterin anabolism|negative regulation of tatiopterin synthesis|downregulation of tatiopterin biosynthesis tt 2012-06-14T04:02:06Z biological_process owl:Class GO:1900974 biolink:NamedThing regulation of tatiopterin biosynthetic process Any process that modulates the frequency, rate or extent of tatiopterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of tatiopterin anabolism|regulation of tatiopterin synthesis|regulation of tatiopterin biosynthesis|regulation of tatiopterin formation tt 2012-06-14T04:01:42Z biological_process owl:Class GO:0014008 biolink:NamedThing positive regulation of microglia differentiation Any process that activates, maintains or increases the frequency, rate or extent of microglia differentiation, the process in which a relatively unspecialized cell acquires specialized features of a microglial cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of microglia differentiation|upregulation of microglia differentiation|activation of microglia differentiation|up regulation of microglia differentiation|positive regulation of microglial cell differentiation|stimulation of microglia differentiation biological_process owl:Class GO:0014006 biolink:NamedThing regulation of microglia differentiation Any process that modulates the frequency, rate or extent of microglia differentiation, the process in which a relatively unspecialized cell acquires specialized features of a microglial cell. tmpzr1t_l9r_go_relaxed.owl regulation of microglial cell differentiation biological_process owl:Class GO:0010668 biolink:NamedThing ectodermal cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features of an ectodermal cell. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075055 biolink:NamedThing positive regulation of penetration peg formation Any process that activates, maintains or increases the frequency, rate or extent of symbiont penetration peg formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont penetration peg formation for entry into host|positive regulation of symbiont penetration peg initiation https://github.com/geneontology/go-ontology/issues/18557 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. GO:0075059 biological_process owl:Class GO:0075054 biolink:NamedThing modulation of penetration peg formation Any process that modulates the frequency, rate or extent of symbiont penetration peg formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont penetration peg initiation|modulation of symbiont penetration peg formation for entry into host https://github.com/geneontology/go-ontology/issues/18557 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. GO:0075058 biological_process owl:Class GO:1904669 biolink:NamedThing ATP export The directed movement of ATP out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl ATP efflux tb 2015-09-09T16:33:06Z biological_process owl:Class GO:0015867 biolink:NamedThing ATP transport The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106081 biolink:NamedThing maltose import across plasma membrane The directed movement of maltose from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-28T18:14:16Z biological_process owl:Class GO:1904981 biolink:NamedThing maltose transmembrane transport The process in which maltose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-02-28T21:14:04Z biological_process owl:Class GO:1990299 biolink:NamedThing Bub1-Bub3 complex localization to kinetochore A cellular protein complex localization that acts on a Bub1-Bub3 complex; as a result, the complex is transported to, or maintained in, a specific location at the kinetochore. tmpzr1t_l9r_go_relaxed.owl al 2014-02-26T09:29:13Z biological_process owl:Class GO:2000702 biolink:NamedThing regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl regulation of fibroblast growth factor receptor signaling pathway of ureteric bud formation|regulation of FGF receptor signaling pathway of ureteric bud formation|regulation of fibroblast growth factor receptor signalling pathway of ureteric bud formation|regulation of FGFR signaling pathway of ureteric bud formation|regulation of FGF receptor signalling pathway of ureteric bud formation yaf 2011-05-25T09:48:15Z biological_process owl:Class GO:0044084 biolink:NamedThing host cell membrane pore complex Any small opening in a host cell membrane that allows the passage of gases and/or liquids, composed of host proteins. tmpzr1t_l9r_go_relaxed.owl pore complex in host cell membrane cellular_component owl:Class GO:0046107 biolink:NamedThing uracil biosynthetic process The chemical reactions and pathways resulting in the formation of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. tmpzr1t_l9r_go_relaxed.owl uracil anabolism|uracil synthesis|uracil formation|uracil biosynthesis biological_process owl:Class GO:0019856 biolink:NamedThing pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. tmpzr1t_l9r_go_relaxed.owl pyrimidine base biosynthesis|pyrimidine base anabolism|pyrimidine base formation|pyrimidine base synthesis|pyrimidine base biosynthetic process biological_process owl:Class GO:1990923 biolink:NamedThing PET complex A protein complex that is composed of at least EXD1, TDRD12 and some PIWI protein. The complex is required for MILI slicing-triggered biogenesis and loading of MIWI2 piRNAs. tmpzr1t_l9r_go_relaxed.owl sp 2016-01-14T02:19:39Z cellular_component owl:Class GO:0047430 biolink:NamedThing oligosaccharide-diphosphodolichol diphosphatase activity Catalysis of the reaction: H2O + oligosaccharide-diphosphodolichol = dolichol-phosphate + oligosaccharide phosphate. tmpzr1t_l9r_go_relaxed.owl oligosaccharide-diphosphodolichol phosphodolichohydrolase activity|oligosaccharide-diphosphodolichol pyrophosphatase activity MetaCyc:3.6.1.44-RXN|RHEA:15205|EC:3.6.1.44 molecular_function owl:Class GO:0070955 biolink:NamedThing negative regulation of neutrophil mediated killing of symbiont cell Any process that decreases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl downregulation of neutrophil mediated killing of symbiont cell|down-regulation of neutrophil mediated killing of symbiont cell|inhibition of neutrophil mediated killing of symbiont cell|down regulation of neutrophil mediated killing of symbiont cell mah 2009-10-01T02:20:17Z biological_process owl:Class GO:0033713 biolink:NamedThing choline:oxygen 1-oxidoreductase activity Catalysis of the reaction: choline + O2 = betaine aldehyde + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl choline oxidase activity MetaCyc:CHOLINE-OXIDASE-RXN|EC:1.1.3.17|RHEA:13505 molecular_function owl:Class GO:0016899 biolink:NamedThing oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces an oxygen molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.1.3.- molecular_function owl:Class GO:0042631 biolink:NamedThing cellular response to water deprivation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water. tmpzr1t_l9r_go_relaxed.owl cellular response to drought biological_process owl:Class GO:0071462 biolink:NamedThing cellular response to water stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T11:32:44Z biological_process owl:Class GO:0098789 biolink:NamedThing pre-mRNA cleavage required for polyadenylation The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation. tmpzr1t_l9r_go_relaxed.owl pre-mRNA cleavage factor activity|cleavage and polyadenylylation specificity factor activity biological_process owl:Class GO:0098787 biolink:NamedThing mRNA cleavage involved in mRNA processing Cleavage of an immature mRNA transcript to produce one or more more mature mRNA transcripts, prior to translation into polypeptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043334 biolink:NamedThing 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-hexaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-hexaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 2-hexaprenyl-6-methoxy-1,4-benzoquinone methylase activity Note that the polyprenyl sidechain substrate for these methyltransferases varies in length between species, for example, 6 units in S. cerevisiae, 8 units in E. coli and 10 units in G. suboxidans. Where the length of the substrate polyprenyl chain is unknown, the term '2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity ; GO:0008425' should be used. molecular_function owl:Class GO:0008425 biolink:NamedThing 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl coenzyme Q biosynthetic process methyltransferase activity|2-polyprenyl-6-methoxy-1,4-benzoquinone methylase activity|coenzyme Q biosynthesis methyltransferase activity|ubiquinone biosynthetic process methyltransferase activity|ubiquinone biosynthesis methyltransferase activity EC:2.1.1.- molecular_function owl:Class GO:0004585 biolink:NamedThing ornithine carbamoyltransferase activity Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. tmpzr1t_l9r_go_relaxed.owl OTCase activity|carbamoyl-phosphate:L-ornithine carbamoyltransferase activity|L-ornithine transcarbamylase activity|L-ornithine carbamoyltransferase activity|ornithine transcarbamylase activity|L-ornithine carbamyltransferase activity|carbamylphosphate-ornithine transcarbamylase activity|OTC activity|citrulline phosphorylase activity|ornithine carbamyltransferase activity Reactome:R-HSA-70560|MetaCyc:RXN-13482|MetaCyc:ORNCARBAMTRANSFER-RXN|RHEA:19513|EC:2.1.3.3 molecular_function owl:Class GO:0016743 biolink:NamedThing carboxyl- or carbamoyltransferase activity Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl carboxyl- and carbamoyltransferase activity EC:2.1.3.- molecular_function owl:Class GO:0071378 biolink:NamedThing cellular response to growth hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth hormone stimulus. Growth hormone is a peptide hormone that binds to the growth hormone receptor and stimulates growth. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:25:17Z biological_process owl:Class GO:0060416 biolink:NamedThing response to growth hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth hormone stimulus. Growth hormone is a peptide hormone that binds to the growth hormone receptor and stimulates growth. tmpzr1t_l9r_go_relaxed.owl response to growth hormone stimulus biological_process owl:Class GO:0043107 biolink:NamedThing type IV pilus-dependent motility Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility. tmpzr1t_l9r_go_relaxed.owl twitching motility|type 4 pilus-dependent motility|social gliding motility|type four pilus-dependent motility|TFP-dependent movement|TFP-dependent motility biological_process owl:Class GO:0048870 biolink:NamedThing cell motility Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. tmpzr1t_l9r_go_relaxed.owl cell locomotion|movement of a cell|cell movement biological_process owl:Class GO:0071650 biolink:NamedThing negative regulation of chemokine (C-C motif) ligand 5 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 5. tmpzr1t_l9r_go_relaxed.owl negative regulation of RANTES production|negative regulation of Regulated upon Activation, Normal T-cell Expressed, and Secreted production|negative regulation of CCL5 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0071649 biolink:NamedThing regulation of chemokine (C-C motif) ligand 5 production Any process that modulates the frequency, rate, or extent of production of chemokine (C-C motif) ligand 5. tmpzr1t_l9r_go_relaxed.owl regulation of RANTES production|regulation of Regulated upon Activation, Normal T-cell Expressed, and Secreted production|regulation of CCL5 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:2000106 biolink:NamedThing regulation of leukocyte apoptotic process Any process that modulates the frequency, rate or extent of leukocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of leukocyte apoptosis mah 2010-09-15T01:42:05Z biological_process owl:Class GO:2000356 biolink:NamedThing regulation of kidney smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of kidney smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-03T02:14:24Z biological_process owl:Class GO:0051150 biolink:NamedThing regulation of smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099529 biolink:NamedThing neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential Neurotransmitter receptor activity occurring in the postsynaptic membrane that is involved in regulating postsynaptic membrane potential, either directly (ionotropic receptors) or indirectly (e.g. via GPCR activation of an ion channel). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903459 biolink:NamedThing mitotic DNA replication lagging strand elongation Any lagging strand elongation that is involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl lagging strand elongation involved in DNA replication during S phase involved in mitotic cell cycle|lagging strand elongation involved in DNA replication involved in S phase involved in mitotic cell cycle|lagging strand elongation involved in mitotic nuclear cell cycle DNA replication|lagging strand elongation involved in DNA replication involved in S-phase involved in mitotic cell cycle|lagging strand elongation involved in mitotic DNA replication|lagging strand elongation involved in nuclear cell cycle DNA replication involved in mitotic cell cycle vw 2014-09-23T13:32:54Z biological_process owl:Class GO:1902983 biolink:NamedThing DNA strand elongation involved in mitotic DNA replication Any DNA strand elongation involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA strand elongation involved in mitotic cell cycle DNA replication jl 2014-05-06T20:33:22Z biological_process owl:Class GO:0070821 biolink:NamedThing tertiary granule membrane The lipid bilayer surrounding a tertiary granule. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-20T03:59:41Z cellular_component owl:Class GO:0046368 biolink:NamedThing GDP-L-fucose metabolic process The chemical reactions and pathways involving GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-L-fucose metabolism biological_process owl:Class GO:0072270 biolink:NamedThing metanephric short nephron development The process whose specific outcome is the progression of a short nephron in the metanephros over time, from its formation to the mature structure. Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T03:15:18Z biological_process owl:Class GO:0072210 biolink:NamedThing metanephric nephron development The process whose specific outcome is the progression of a nephron in the metanephros over time, from its formation to the mature structure. A nephron is the functional unit of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T12:52:57Z biological_process owl:Class GO:0061328 biolink:NamedThing posterior Malpighian tubule development The process whose specific outcome is the progression of the posterior Malpighian tubule over time, from its formation to the mature structure. The pair of posterior tubules arise from a ventrolateral region of the embryonic hindgut and project backwards through the body cavity. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which connects with the posterior part of the gut. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T01:24:35Z biological_process owl:Class GO:0072002 biolink:NamedThing Malpighian tubule development The process whose specific outcome is the progression of the Malpighian tubule over time, from its formation to the mature structure. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which leads into the posterior part of the gut. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T10:54:30Z biological_process owl:Class GO:0090272 biolink:NamedThing negative regulation of fibroblast growth factor production Any process that decreases the rate, frequency or extent of the appearance of a fibroblast growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:33:33Z biological_process owl:Class GO:0010651 biolink:NamedThing negative regulation of cell communication by electrical coupling Any process that decreases the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000934 biolink:NamedThing negative regulation of cellotriose metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellotriose metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellotriose metabolism tt 2011-08-01T12:44:20Z biological_process owl:Class GO:0002811 biolink:NamedThing negative regulation of antifungal peptide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate, or extent of antifungal peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl inhibition of antifungal peptide biosynthetic process|down regulation of antifungal peptide biosynthetic process|downregulation of antifungal peptide biosynthetic process|down-regulation of antifungal peptide biosynthetic process biological_process owl:Class GO:0002789 biolink:NamedThing negative regulation of antifungal peptide production Any process that stops, prevents, or reduces the frequency, rate, or extent of antifungal peptide production. tmpzr1t_l9r_go_relaxed.owl down regulation of antifungal peptide production|inhibition of antifungal peptide production|down-regulation of antifungal peptide production|downregulation of antifungal peptide production biological_process owl:Class GO:0018898 biolink:NamedThing 2,4-dichlorobenzoate metabolic process The chemical reactions and pathways involving 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs). tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorobenzoate metabolism UM-BBD_pathwayID:dcb biological_process owl:Class GO:0035437 biolink:NamedThing maintenance of protein localization in endoplasmic reticulum Any process in which a protein is maintained in the endoplasmic reticulum and prevented from moving elsewhere. These include sequestration within the endoplasmic reticulum, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl maintenance of protein localization in ER|retention of protein in ER|maintenance of protein location in ER|maintenance of protein location in endoplasmic reticulum|retention of protein in endoplasmic reticulum|maintenance of protein localisation in endoplasmic reticulum|protein-endoplasmic reticulum retention|protein-ER retention bf 2010-04-09T10:39:49Z biological_process owl:Class GO:0045185 biolink:NamedThing maintenance of protein location Any process in which a protein is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of proteins that do move away. tmpzr1t_l9r_go_relaxed.owl active protein retrieval|protein sequestering|maintenance of protein localization|protein retention biological_process owl:Class GO:0072527 biolink:NamedThing pyrimidine-containing compound metabolic process The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyrimidine and derivative metabolic process|pyrimidine-containing compound metabolism mah 2011-01-04T03:27:19Z biological_process owl:Class GO:0071676 biolink:NamedThing negative regulation of mononuclear cell migration Any process that decreases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl down regulation of mononuclear cell migration|down-regulation of mononuclear cell migration|downregulation of mononuclear cell migration|inhibition of mononuclear cell migration mah 2010-02-16T02:13:55Z biological_process owl:Class GO:1902054 biolink:NamedThing negative regulation of neosartoricin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of neosartoricin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of neosartoricin synthesis|negative regulation of neosartoricin anabolism|negative regulation of neosartoricin formation|down regulation of neosartoricin biosynthesis|down-regulation of neosartoricin formation|down regulation of neosartoricin anabolism|down-regulation of neosartoricin anabolism|inhibition of neosartoricin anabolism|inhibition of neosartoricin synthesis|downregulation of neosartoricin formation|down-regulation of neosartoricin biosynthetic process|downregulation of neosartoricin anabolism|negative regulation of neosartoricin synthesis|inhibition of neosartoricin biosynthetic process|negative regulation of neosartoricin biosynthesis|down regulation of neosartoricin synthesis|down-regulation of neosartoricin biosynthesis|down regulation of neosartoricin biosynthetic process|down regulation of neosartoricin formation|downregulation of neosartoricin biosynthetic process|downregulation of neosartoricin biosynthesis|inhibition of neosartoricin biosynthesis|inhibition of neosartoricin formation|downregulation of neosartoricin synthesis di 2013-04-11T15:46:15Z biological_process owl:Class GO:1902053 biolink:NamedThing regulation of neosartoricin biosynthetic process Any process that modulates the frequency, rate or extent of neosartoricin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of neosartoricin formation|regulation of neosartoricin anabolism|regulation of neosartoricin biosynthesis|regulation of neosartoricin synthesis di 2013-04-11T15:46:06Z biological_process owl:Class GO:2001261 biolink:NamedThing negative regulation of semaphorin-plexin signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of semaphorin-plexin signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of semaphorin-plexin signalling pathway vk 2011-12-08T02:05:48Z biological_process owl:Class GO:0009968 biolink:NamedThing negative regulation of signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. tmpzr1t_l9r_go_relaxed.owl negative regulation of signaling pathway|down-regulation of signal transduction|inhibition of signal transduction|down regulation of signal transduction|negative regulation of signalling pathway|downregulation of signal transduction GO:0035467 biological_process owl:Class GO:0030552 biolink:NamedThing cAMP binding Binding to cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl 3',5'-cAMP binding|adenosine 3',5'-cyclophosphate binding|cyclic AMP binding|3',5' cAMP binding molecular_function owl:Class GO:0030551 biolink:NamedThing cyclic nucleotide binding Binding to a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032434 biolink:NamedThing regulation of proteasomal ubiquitin-dependent protein catabolic process Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061136 biolink:NamedThing regulation of proteasomal protein catabolic process Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T01:33:20Z biological_process owl:Class GO:0043371 biolink:NamedThing negative regulation of CD4-positive, alpha-beta T cell differentiation Any process that stops, prevents, or reduces the frequency, rate, or extent of CD4-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of CD4-positive, alpha beta T cell differentiation|negative regulation of CD4-positive, alpha beta T-lymphocyte differentiation|negative regulation of CD4-positive, alpha beta T-cell differentiation|downregulation of CD4-positive, alpha beta T cell differentiation|inhibition of CD4-positive, alpha beta T cell differentiation|negative regulation of CD4-positive, alpha beta T cell development|negative regulation of CD4-positive T-cell differentiation|negative regulation of CD4-positive T-lymphocyte differentiation|down regulation of CD4-positive, alpha beta T cell differentiation|negative regulation of CD4-positive, alpha beta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0100009 biolink:NamedThing regulation of fever generation by prostaglandin secretion Any prostaglandin secretion process that regulates fever generation. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0071582 biolink:NamedThing negative regulation of zinc ion transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of zinc ions (Zn2+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T03:14:25Z biological_process owl:Class GO:0044512 biolink:NamedThing envenomation resulting in modulation of glucagon-like peptide receptor 1 activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of glucagon-like peptide receptor 1 activity in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-26T10:20:19Z biological_process owl:Class GO:0044511 biolink:NamedThing envenomation resulting in modulation of receptor activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of receptor activity in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-26T10:12:24Z biological_process owl:Class GO:0035383 biolink:NamedThing thioester metabolic process The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. tmpzr1t_l9r_go_relaxed.owl thioester metabolism bf 2010-03-18T01:48:12Z biological_process owl:Class GO:0060783 biolink:NamedThing mesenchymal smoothened signaling pathway involved in prostate gland development The series of molecular signals generated as a consequence of activation of the transmembrane Smoothened-type protein in the mesenchymal cells of the prostate that contribute to the progression of the prostate over time. This process contributes to lung development. tmpzr1t_l9r_go_relaxed.owl mesenchymal hedgehog signaling pathway involved in prostate gland development|mesenchymal hh signaling pathway involved in prostate gland development|mesenchymal smoothened signalling pathway involved in prostate gland development dph 2009-07-28T11:57:59Z biological_process owl:Class GO:0007224 biolink:NamedThing smoothened signaling pathway A series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened. tmpzr1t_l9r_go_relaxed.owl Sonic hedgehog signaling pathway|hedgehog signaling pathway|hh signaling pathway|Shh signaling pathway|smoothened signalling pathway|hh signalling pathway Wikipedia:Hedgehog_signaling_pathway biological_process owl:Class GO:0044272 biolink:NamedThing sulfur compound biosynthetic process The chemical reactions and pathways resulting in the formation of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. tmpzr1t_l9r_go_relaxed.owl sulfur compound formation|sulfur compound biosynthesis|sulfur biosynthesis|sulfur compound anabolism|sulfur biosynthetic process|sulfur compound synthesis biological_process owl:Class GO:0050575 biolink:NamedThing 2-(S)-hydroxypropyl-CoM dehydrogenase activity Catalysis of the reaction: 2-(S)-hydroxypropyl-coenzyme M + NAD(+) = 2-oxopropyl-coenzyme M + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2-(2-(S)-hydroxypropylthio)ethanesulfonate dehydrogenase activity|2-[2-(S)-hydroxypropylthio]ethanesulfonate:NAD+ oxidoreductase activity MetaCyc:1.1.1.269-RXN|RHEA:21052|UM-BBD_reactionID:r0853|KEGG_REACTION:R05690|EC:1.1.1.269 molecular_function owl:Class GO:0002132 biolink:NamedThing wobble position uridine ribose methylation The process in which the ribose of uridine at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the 2'-O position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002130 biolink:NamedThing wobble position ribose methylation The process in which the ribose base of the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the 2'O position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051268 biolink:NamedThing alpha-keto amide reductase activity Catalysis of the reaction: alpha-keto amide + 2 H+ (from donor) = (R)-hydroxy amide. Alpha-keto amides are of the form R-CO-CONH2, where R may be aromatic or aliphatic. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016903 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors EC:1.2.-.- molecular_function owl:Class GO:0033610 biolink:NamedThing oxalate biosynthetic process The chemical reactions and pathways resulting in the formation of oxalate, the organic acid ethanedioate. tmpzr1t_l9r_go_relaxed.owl oxalate anabolism|oxalate biosynthesis|oxalic acid biosynthetic process|ethanedioic acid biosynthetic process|ethanedioate biosynthetic process|oxalate formation|oxalate synthesis biological_process owl:Class GO:0033609 biolink:NamedThing oxalate metabolic process The chemical reactions and pathways involving oxalate, the organic acid ethanedioate. tmpzr1t_l9r_go_relaxed.owl oxalate metabolism|ethanedioate metabolic process|ethanedioic acid metabolic process|oxalic acid metabolic process biological_process owl:Class GO:0050336 biolink:NamedThing thioethanolamine S-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + cysteamine = S-acetylcysteamine + CoA. tmpzr1t_l9r_go_relaxed.owl thioltransacetylase B activity|acetyl-CoA:thioethanolamine S-acetyltransferase activity|acetyl-CoA:2-aminoethanethiol S-acetyltransferase activity|thioethanolamine acetyltransferase activity KEGG_REACTION:R03668|MetaCyc:THIOETHANOLAMINE-S-ACETYLTRANSFERASE-RXN|RHEA:23280|EC:2.3.1.11 molecular_function owl:Class GO:0016418 biolink:NamedThing S-acetyltransferase activity Catalysis of the transfer of an acetyl group to a sulfur atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.38 molecular_function owl:Class GO:0098919 biolink:NamedThing structural constituent of postsynaptic density The action of a molecule that contributes to the structural integrity of a postsynaptic density. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098879 biolink:NamedThing structural constituent of postsynaptic specialization The action of a molecule that contributes to the structural integrity of a postsynaptic specialization. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106247 biolink:NamedThing negative regulation of poly(A)-specific ribonuclease activity Any process that stops, prevents or reduces the frequency, rate or extent of poly(A)-specific ribonuclease activity. tmpzr1t_l9r_go_relaxed.owl hjd 2020-02-03T19:01:02Z biological_process owl:Class GO:1903504 biolink:NamedThing regulation of mitotic spindle checkpoint Any process that modulates the frequency, rate or extent of mitotic spindle checkpoint. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic cell cycle spindle checkpoint Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of spindle checkpoint (assembly, orientation or Dma1-dependent). al 2014-10-01T13:52:57Z biological_process owl:Class GO:0018204 biolink:NamedThing peptidyl-leucine modification The modification of peptidyl-leucine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043990 biolink:NamedThing histone H2A-S1 phosphorylation The modification of histone H2A by the addition of an phosphate group to a serine residue at position 1 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2A phosphorylation at S1|histone H2AS1 phosphorylation biological_process owl:Class GO:0035404 biolink:NamedThing histone-serine phosphorylation The modification of histones by addition of a phosphate group to a serine residue. tmpzr1t_l9r_go_relaxed.owl histone serine phosphorylation bf 2010-03-24T10:08:25Z biological_process owl:Class GO:0019872 biolink:NamedThing streptomycin biosynthetic process The chemical reactions and pathways resulting in the formation of streptomycin, a commonly used antibiotic in cell culture media; it acts only on prokaryotes and blocks transition from initiation complex to chain elongating ribosome. tmpzr1t_l9r_go_relaxed.owl streptomycin synthesis|streptomycin formation|streptomycin biosynthesis|streptomycin anabolism biological_process owl:Class GO:0046343 biolink:NamedThing streptomycin metabolic process The chemical reactions and pathways involving streptomycin, a commonly used antibiotic in cell culture media. It acts only on prokaryotes and blocks transition from initiation complex to chain elongating ribosome. tmpzr1t_l9r_go_relaxed.owl streptomycin metabolism biological_process owl:Class GO:0045144 biolink:NamedThing meiotic sister chromatid segregation The cell cycle process in which sister chromatids are organized and then physically separated and randomly apportioned to two sets during the second division of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiosis II, chromosome segregation biological_process owl:Class GO:0000819 biolink:NamedThing sister chromatid segregation The cell cycle process in which sister chromatids are organized and then physically separated and apportioned to two or more sets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904988 biolink:NamedThing negative regulation of endothelial cell activation Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell activation. tmpzr1t_l9r_go_relaxed.owl down regulation of endothelial cell activation|downregulation of endothelial cell activation|inhibition of endothelial cell activation|down-regulation of endothelial cell activation bc 2016-02-29T16:16:18Z biological_process owl:Class GO:0070067 biolink:NamedThing syntaxin-6-syntaxin-16-Vti1a complex A SNARE complex that contains syntaxin 6, syntaxin 16, and Vti1a (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031201 biolink:NamedThing SNARE complex A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901739 biolink:NamedThing regulation of myoblast fusion Any process that modulates the frequency, rate or extent of myoblast fusion. tmpzr1t_l9r_go_relaxed.owl rl 2013-01-11T20:23:50Z biological_process owl:Class GO:1904650 biolink:NamedThing negative regulation of fat cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of fat cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of fat cell apoptosis|down-regulation of fat cell apoptotic process|down-regulation of adipocyte apoptosis|down regulation of fat cell apoptosis|negative regulation of adipocyte apoptotic process|downregulation of adipose cell apoptotic process|downregulation of fat cell apoptotic process|down-regulation of adipocyte apoptotic process|inhibition of fat cell apoptosis|inhibition of adipose cell apoptotic process|down regulation of adipose cell apoptosis|negative regulation of adipocyte apoptosis|downregulation of adipose cell apoptosis|negative regulation of fat cell apoptosis|inhibition of adipocyte apoptosis|negative regulation of adipose cell apoptotic process|down regulation of adipose cell apoptotic process|down-regulation of adipose cell apoptosis|down-regulation of adipose cell apoptotic process|downregulation of adipocyte apoptosis|down regulation of adipocyte apoptosis|inhibition of fat cell apoptotic process|downregulation of fat cell apoptosis|down regulation of fat cell apoptotic process|downregulation of adipocyte apoptotic process|down regulation of adipocyte apoptotic process|negative regulation of adipose cell apoptosis|inhibition of adipocyte apoptotic process|inhibition of adipose cell apoptosis sl 2015-08-31T20:59:34Z biological_process owl:Class GO:1904649 biolink:NamedThing regulation of fat cell apoptotic process Any process that modulates the frequency, rate or extent of fat cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of fat cell apoptosis|regulation of adipocyte apoptotic process|regulation of adipocyte apoptosis|regulation of adipose cell apoptotic process|regulation of adipose cell apoptosis sl 2015-08-31T20:59:28Z biological_process owl:Class GO:2000372 biolink:NamedThing negative regulation of DNA topoisomerase (ATP-hydrolyzing) activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA topoisomerase (ATP-hydrolyzing) activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of deoxyribonucleate topoisomerase|negative regulation of type II DNA topoisomerase activity|negative regulation of topoisomerase|negative regulation of DNA topoisomerase (ATP-hydrolysing)|negative regulation of topoisomerase II|negative regulation of deoxyribonucleic topoisomerase activity|negative regulation of DNA topoisomerase IV activity|negative regulation of DNA topoisomerase type II activity|negative regulation of DNA topoisomerase II mah 2011-02-09T02:35:36Z biological_process owl:Class GO:0043086 biolink:NamedThing negative regulation of catalytic activity Any process that stops or reduces the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl downregulation of metalloenzyme activity|down regulation of metalloenzyme activity|inhibition of enzyme activity|negative regulation of metalloenzyme activity|down-regulation of metalloenzyme activity|negative regulation of enzyme activity|down regulation of enzyme activity|down-regulation of enzyme activity|downregulation of enzyme activity|inhibition of metalloenzyme activity GO:0048553 biological_process owl:Class GO:0010811 biolink:NamedThing positive regulation of cell-substrate adhesion Any process that increases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010810 biolink:NamedThing regulation of cell-substrate adhesion Any process that modulates the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071171 biolink:NamedThing site-specific DNA replication termination at RTS1 barrier A DNA replication termination process that takes place at the RTS1 termination site in the mating type locus, in a specific direction required for subsequent imprinting and mating-type switching. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-20T01:24:41Z biological_process owl:Class GO:0071170 biolink:NamedThing site-specific DNA replication termination A DNA replication termination process that takes place at a specific termination site. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'replication fork arrest ; GO:0043111' and its children. mah 2009-11-20T01:07:30Z biological_process owl:Class GO:0060226 biolink:NamedThing negative regulation of retinal cone cell fate commitment Any process that increases the process in which a cell becomes committed to a retinal cone cell fate. Retinal cone cell fate commitment is the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901467 biolink:NamedThing negative regulation of ferulate catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of ferulate catabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of ferulate catabolism|down regulation of ferulate catabolic process|down-regulation of ferulate catabolism|down regulation of ferulate breakdown|downregulation of ferulate catabolic process|down-regulation of ferulate catabolic process|down regulation of ferulate catabolism|downregulation of ferulate degradation|down regulation of ferulate degradation|inhibition of ferulate breakdown|downregulation of ferulate catabolism|down-regulation of ferulate breakdown|negative regulation of ferulate degradation|negative regulation of ferulate breakdown|down-regulation of ferulate degradation|downregulation of ferulate breakdown|negative regulation of ferulate catabolism|inhibition of ferulate degradation|inhibition of ferulate catabolic process tt 2012-10-02T14:38:38Z biological_process owl:Class GO:1905339 biolink:NamedThing positive regulation of cohesin unloading Any process that activates or increases the frequency, rate or extent of cohesin unloading. tmpzr1t_l9r_go_relaxed.owl up-regulation of cohesin unloading|upregulation of cohesin unloading|up regulation of cohesin unloading|activation of cohesin unloading vw 2016-07-26T16:24:06Z biological_process owl:Class GO:0004139 biolink:NamedThing deoxyribose-phosphate aldolase activity Catalysis of the reaction: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl 2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase (D-glyceraldehyde-3-phosphate-forming)|deoxyriboaldolase activity|2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase activity|phosphodeoxyriboaldolase activity|2-deoxyribose-5-phosphate aldolase activity|deoxyribose-5-phosphate aldolase activity Reactome:R-HSA-6787321|EC:4.1.2.4|MetaCyc:DEOXYRIBOSE-P-ALD-RXN|KEGG_REACTION:R01066|RHEA:12821 molecular_function owl:Class GO:0016832 biolink:NamedThing aldehyde-lyase activity Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone. tmpzr1t_l9r_go_relaxed.owl aldolase activity EC:4.1.2.- GO:0016228 molecular_function owl:Class GO:0046395 biolink:NamedThing carboxylic acid catabolic process The chemical reactions and pathways resulting in the breakdown of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl carboxylic acid degradation|carboxylic acid catabolism|carboxylic acid breakdown biological_process owl:Class GO:0048561 biolink:NamedThing establishment of animal organ orientation The process that determines the orientation of an animal organ or tissue with reference to an axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035892 biolink:NamedThing modulation of platelet aggregation in other organism Any process in which an organism modulates the frequency, rate or extent of platelet aggregation in another organism. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl regulation of platelet aggregation in other organism|modulation by organism of platelet aggregation in other organism bf 2011-06-15T02:21:10Z biological_process owl:Class GO:0044364 biolink:NamedThing disruption of cells of other organism A process in which an organism has a negative effect on the functioning of the second organism's cells. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T02:27:48Z biological_process owl:Class GO:2000794 biolink:NamedThing regulation of epithelial cell proliferation involved in lung morphogenesis Any process that modulates the frequency, rate or extent of epithelial cell proliferation involved in lung morphogenesis. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-25T07:22:38Z biological_process owl:Class GO:0042834 biolink:NamedThing peptidoglycan binding Interacting selectively and non-covalently, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005539 biolink:NamedThing glycosaminoglycan binding Binding to a glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060264 biolink:NamedThing regulation of respiratory burst involved in inflammatory response Any process that modulates the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl regulation of respiratory burst involved in acute inflammatory response biological_process owl:Class GO:1902129 biolink:NamedThing (-)-lariciresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-lariciresinol synthesis|(-)-lariciresinol formation|(-)-lariciresinol anabolism|(-)-lariciresinol biosynthesis ms 2013-05-21T08:49:44Z biological_process owl:Class GO:0009807 biolink:NamedThing lignan biosynthetic process The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist. tmpzr1t_l9r_go_relaxed.owl lignan biosynthesis|lignan anabolism|lignan formation|lignan synthesis biological_process owl:Class GO:1903069 biolink:NamedThing regulation of ER-associated ubiquitin-dependent protein catabolic process Any process that modulates the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ER-associated protein degradation|regulation of ERAD|regulation of endoplasmic reticulum-associated protein catabolism|regulation of ER-associated protein breakdown|regulation of ER-associated protein catabolic process|regulation of endoplasmic reticulum-associated protein catabolic process|regulation of ER-associated protein catabolism rph 2014-05-28T17:53:46Z biological_process owl:Class GO:1903023 biolink:NamedThing regulation of ascospore-type prospore membrane formation Any process that modulates the frequency, rate or extent of formation of an ascospore-type prospore membrane. tmpzr1t_l9r_go_relaxed.owl regulation of FSM biosynthesis|regulation of forespore membrane biosynthesis|regulation of FSM formation|regulation of FSM assembly|regulation of ascospore-type prospore membrane assembly|regulation of forespore membrane formation al 2014-05-15T08:51:51Z biological_process owl:Class GO:0044087 biolink:NamedThing regulation of cellular component biogenesis Any process that modulates the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060704 biolink:NamedThing acinar cell differentiation involved in salivary gland development The process in which a relatively unspecialized cell acquires specialized structural and/or functional features that characterize an acinar cell of the salivary gland. Acinar cells are protein-secreting cells in the gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T09:32:46Z biological_process owl:Class GO:0060690 biolink:NamedThing epithelial cell differentiation involved in salivary gland development The process in which a relatively unspecialized cell acquire specialized structural and/or functional features of an epithelial cell of the salivary gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T01:04:19Z biological_process owl:Class GO:0070986 biolink:NamedThing left/right axis specification The establishment, maintenance and elaboration of the left/right axis. The left/right axis is defined by a line that runs orthogonal to both the anterior/posterior and dorsal/ventral axes. Each side is defined from the viewpoint of the organism rather of the observer (as per anatomical axes). tmpzr1t_l9r_go_relaxed.owl left/right axis determination|left-right axis specification mah 2009-10-29T01:43:34Z biological_process owl:Class GO:0009798 biolink:NamedThing axis specification The establishment, maintenance and elaboration of a pattern along a line or around a point. tmpzr1t_l9r_go_relaxed.owl axis determination biological_process owl:Class GO:0030980 biolink:NamedThing alpha-glucan catabolic process The chemical reactions and pathways resulting in the breakdown of alpha-glucans. tmpzr1t_l9r_go_relaxed.owl alpha-glucan degradation|alpha-glucan catabolism|alpha-glucan breakdown biological_process owl:Class GO:0009251 biolink:NamedThing glucan catabolic process The chemical reactions and pathways resulting in the breakdown of glucans, polysaccharides consisting only of glucose residues. tmpzr1t_l9r_go_relaxed.owl glucan catabolism|glucan degradation|glucan breakdown biological_process owl:Class GO:2001009 biolink:NamedThing regulation of plant-type cell wall cellulose biosynthetic process Any process that modulates the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall cellulose biosynthesis|regulation of cellulose biosynthesis during cell wall biosynthesis tt 2011-08-08T08:47:15Z biological_process owl:Class GO:0050867 biolink:NamedThing positive regulation of cell activation Any process that activates or increases the frequency, rate or extent of activation. tmpzr1t_l9r_go_relaxed.owl up regulation of cell activation|up-regulation of cell activation|activation of cell activation|upregulation of cell activation|stimulation of cell activation biological_process owl:Class GO:0044011 biolink:NamedThing single-species biofilm formation on inanimate substrate A process in which microorganisms of the same species attach to and grow on an inanimate surface such as a rock or pipe, and produce extracellular polymers that facilitate attachment and matrix formation, resulting in an alteration in the phenotype of the organisms with respect to growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090609 biolink:NamedThing single-species submerged biofilm formation A process in which planktonically growing microorganisms of the same species aggregate and grow on solid substrates under the flow of a liquid and produce extracellular polymers that facilitate attachment and matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-16T14:55:15Z biological_process owl:Class GO:0061273 biolink:NamedThing mesonephric distal tubule morphogenesis The process in which the anatomical structures of a mesonephric distal tubule are generated and organized. The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T12:12:00Z biological_process owl:Class GO:0061240 biolink:NamedThing mesonephric nephron tubule morphogenesis The process in which the anatomical structures of a mesonephric nephron tubule are generated and organized. A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:09:26Z biological_process owl:Class GO:0033653 biolink:NamedThing host cell chloroplast part Any constituent part of a chloroplast as it is found in host cells and which are a chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host chloroplast component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:0033652 biolink:NamedThing host cell chloroplast A chlorophyll-containing plastid as found within host cells with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002188 biolink:NamedThing translation reinitiation A gene-specific translational control mechanism where the small ribosomal subunit remains attached to the mRNA following termination of translation, then resumes scanning on the same mRNA molecule and initiates again at a downstream start site. Reinitiation depends on de novo recruitment of the ternary complex that is required to recognize the next AUG codon. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-22T12:31:13Z biological_process owl:Class GO:0002183 biolink:NamedThing cytoplasmic translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein in the cytoplasm. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-09T03:15:48Z biological_process owl:Class GO:1905044 biolink:NamedThing regulation of Schwann cell proliferation involved in axon regeneration Any process that modulates the frequency, rate or extent of Schwann cell proliferation involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl rph 2016-03-11T14:47:35Z biological_process owl:Class GO:0010624 biolink:NamedThing regulation of Schwann cell proliferation Any process that modulates the frequency or rate of multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046311 biolink:NamedThing prenylcysteine biosynthetic process The chemical reactions and pathways resulting in the formation of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue. tmpzr1t_l9r_go_relaxed.owl prenylcysteine biosynthesis|prenylcysteine anabolism|prenylcysteine synthesis|prenylcysteine formation biological_process owl:Class GO:0030329 biolink:NamedThing prenylcysteine metabolic process The chemical reactions and pathways involving prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue. tmpzr1t_l9r_go_relaxed.owl prenylcysteine metabolism biological_process owl:Class GO:0106096 biolink:NamedThing response to ceramide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ceramide stimulus. tmpzr1t_l9r_go_relaxed.owl hjd 2018-02-12T19:48:43Z biological_process owl:Class GO:0060138 biolink:NamedThing fetal process involved in parturition A reproductive process occurring in the embryo that results in birth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048609 biolink:NamedThing multicellular organismal reproductive process The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. tmpzr1t_l9r_go_relaxed.owl organismal reproductive process|reproductive process in a multicellular organism biological_process owl:Class GO:0009395 biolink:NamedThing phospholipid catabolic process The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl phospholipid breakdown|phospholipid degradation|phospholipid catabolism biological_process owl:Class GO:0046434 biolink:NamedThing organophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of organophosphates, any phosphate-containing organic compound. tmpzr1t_l9r_go_relaxed.owl organophosphate catabolism|organophosphate breakdown|organophosphate degradation biological_process owl:Class GO:1900940 biolink:NamedThing positive regulation of (Z)-nonadeca-1,14-diene metabolic process Any process that activates or increases the frequency, rate or extent of (Z)-nonadeca-1,14-diene metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of (Z)-nonadeca-1,14-diene metabolic process|up regulation of (Z)-nonadeca-1,14-diene metabolism|up-regulation of (Z)-nonadeca-1,14-diene metabolism|activation of (Z)-nonadeca-1,14-diene metabolism|activation of (Z)-nonadeca-1,14-diene metabolic process|up-regulation of (Z)-nonadeca-1,14-diene metabolic process|upregulation of (Z)-nonadeca-1,14-diene metabolism|upregulation of (Z)-nonadeca-1,14-diene metabolic process|positive regulation of (Z)-nonadeca-1,14-diene metabolism tt 2012-06-14T03:16:05Z biological_process owl:Class GO:1900910 biolink:NamedThing positive regulation of olefin metabolic process Any process that activates or increases the frequency, rate or extent of olefin metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of olefin metabolic process|upregulation of olefin metabolic process|activation of olefin metabolic process|positive regulation of olefin metabolism|up-regulation of olefin metabolism|upregulation of olefin metabolism|up-regulation of olefin metabolic process|activation of olefin metabolism|up regulation of olefin metabolism tt 2012-06-13T04:18:58Z biological_process owl:Class GO:0102405 biolink:NamedThing (+)-taxifolin 5'-hydroxylase activity Catalysis of the reaction: (+)-taxifolin(1-) + O2 + NADPH(4-) + H+ <=> (+)-dihydromyricetin + NADP(3-) + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:61116|MetaCyc:RXN-13718 molecular_function owl:Class GO:0002557 biolink:NamedThing histamine secretion by basophil The regulated release of histamine by a basophil or group of basophils. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002441 biolink:NamedThing histamine secretion involved in inflammatory response The regulated release of histamine by a cell as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl histamine secretion involved in acute inflammatory response biological_process owl:Class GO:0019524 biolink:NamedThing keto-D-gluconate catabolic process The chemical reactions and pathways resulting in the breakdown of keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl keto-D-gluconate breakdown|keto-D-gluconate degradation|keto-D-gluconate catabolism MetaCyc:DHGLUCONATE-PYR-CAT-PWY biological_process owl:Class GO:0046181 biolink:NamedThing ketogluconate catabolic process The chemical reactions and pathways resulting in the breakdown of ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group. tmpzr1t_l9r_go_relaxed.owl ketogluconate degradation|ketogluconate breakdown|ketogluconate catabolism biological_process owl:Class GO:0047493 biolink:NamedThing ceramide cholinephosphotransferase activity Catalysis of the reaction: CDP-choline + ceramide = CMP + H(+) + sphingomyelin. tmpzr1t_l9r_go_relaxed.owl CDP-choline:N-acylsphingosine cholinephosphotransferase activity|phosphorylcholine-ceramide transferase activity RHEA:16273|KEGG_REACTION:R01891|EC:2.7.8.3|MetaCyc:CERAMIDE-CHOLINEPHOSPHOTRANSFERASE-RXN molecular_function owl:Class GO:0072154 biolink:NamedThing proximal convoluted tubule segment 1 cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an S1 cell in the kidney. tmpzr1t_l9r_go_relaxed.owl S1 cell fate commitment mah 2010-02-24T02:18:19Z biological_process owl:Class GO:0062146 biolink:NamedThing 4-chloro-allylglycine synthase activity Catalysis of the reaction: 4-chloro-L-lysine + AH2 + O2 = A + formaldehyde + H2O + L-2-amino-4-chloropent-4-enoate + NH4(+). tmpzr1t_l9r_go_relaxed.owl RHEA:59888 dph 2019-09-02T16:59:30Z molecular_function owl:Class GO:0005587 biolink:NamedThing collagen type IV trimer A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alpha2(IV) trimers are commonly observed, although more type IV alpha chains exist and may be present in type IV trimers; type IV collagen triple helices associate to form 3 dimensional nets within basement membranes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Collagen_type_IV cellular_component owl:Class GO:0098642 biolink:NamedThing network-forming collagen trimer A collagen trimer that forms networks. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033233 biolink:NamedThing regulation of protein sumoylation Any process that modulates the frequency, rate or extent of the addition of SUMO groups to a protein. tmpzr1t_l9r_go_relaxed.owl regulation of sumoylation biological_process owl:Class GO:1904769 biolink:NamedThing isopentadecanoic acid binding Binding to isopentadecanoic acid. tmpzr1t_l9r_go_relaxed.owl 13-methylmyristic acid binding kmv 2015-10-27T21:33:38Z molecular_function owl:Class GO:0036041 biolink:NamedThing long-chain fatty acid binding Binding to a long-chain fatty acid. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long chain fatty acid binding bf 2011-11-24T02:54:39Z molecular_function owl:Class GO:0008022 biolink:NamedThing protein C-terminus binding Binding to a protein C-terminus, the end of a peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. tmpzr1t_l9r_go_relaxed.owl COOH-terminus binding|carboxylate-terminus binding|carboxyl-terminus binding|carboxy-terminal binding|carboxylate-terminal binding|carboxy-terminus binding|COOH-terminal binding|C-terminal end binding|C-terminal binding|carboxyl-terminal binding molecular_function owl:Class GO:1905101 biolink:NamedThing negative regulation of apoptosome assembly Any process that stops, prevents or reduces the frequency, rate or extent of apoptosome assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of apoptosome formation|down-regulation of apoptosome assembly|downregulation of apoptosome formation|down regulation of apoptosome formation|inhibition of apoptosome assembly|down regulation of apoptosome assembly|downregulation of apoptosome assembly|inhibition of apoptosome formation|down-regulation of apoptosome formation bc 2016-04-04T08:57:51Z biological_process owl:Class GO:0003331 biolink:NamedThing positive regulation of extracellular matrix constituent secretion Any process that increases the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T02:11:22Z biological_process owl:Class GO:0017001 biolink:NamedThing antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms. tmpzr1t_l9r_go_relaxed.owl antibiotic degradation|antibiotic breakdown|antibiotic catabolism biological_process owl:Class GO:0015960 biolink:NamedThing diadenosine polyphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine polyphosphate anabolism|diadenosine polyphosphate formation|diadenosine polyphosphate biosynthesis|diadenosine polyphosphate synthesis biological_process owl:Class GO:0009165 biolink:NamedThing nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). tmpzr1t_l9r_go_relaxed.owl nucleotide anabolism|nucleotide formation|nucleotide biosynthesis|nucleotide synthesis biological_process owl:Class GO:0008061 biolink:NamedThing chitin binding Binding to chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042863 biolink:NamedThing pyochelin metabolic process The chemical reactions and pathways involving the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid). tmpzr1t_l9r_go_relaxed.owl pyochelin metabolism biological_process owl:Class GO:0046927 biolink:NamedThing peptidyl-threonine racemization The racemization of peptidyl-L-threo-threonine at the alpha-carbon to form D-allo-threonine. This is coupled with the formation of the cross-link 2-(S-L-cysteinyl)-D-allo-threonine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018210 biolink:NamedThing peptidyl-threonine modification The modification of peptidyl-threonine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0100001 biolink:NamedThing regulation of skeletal muscle contraction by action potential Any action potential process that regulates skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0001508 biolink:NamedThing action potential A process in which membrane potential cycles through a depolarizing spike, triggered in response to depolarization above some threshold, followed by repolarization. This cycle is driven by the flow of ions through various voltage gated channels with different thresholds and ion specificities. tmpzr1t_l9r_go_relaxed.owl Action potentials typically propagate across excitable membranes. This class covers both action potentials that propagate and those that fail to do so. biological_process owl:Class GO:1902333 biolink:NamedThing nuclear DNA replication DNA ligation Any DNA ligation that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation involved in DNA replication involved in S-phase|DNA ligation involved in nuclear cell cycle DNA replication|DNA ligation involved in DNA replication during S phase|DNA ligation involved in DNA replication involved in S phase jl 2013-07-25T10:55:56Z biological_process owl:Class GO:0006266 biolink:NamedThing DNA ligation The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036345 biolink:NamedThing platelet maturation A developmental process, independent of morphogenetic (shape) change, that is required for a platelet to attain its fully functional state. A platelet is a non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-11T15:23:11Z biological_process owl:Class GO:0048469 biolink:NamedThing cell maturation A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl functional differentiation biological_process owl:Class GO:0051521 biolink:NamedThing termination of monopolar cell growth Any process that stops the active process of bipolar cell growth, polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051514 biolink:NamedThing negative regulation of monopolar cell growth Any process that stops, prevents, or reduces the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of monopolar cell growth|down regulation of monopolar cell growth|inhibition of monopolar cell growth|downregulation of monopolar cell growth biological_process owl:Class GO:0036272 biolink:NamedThing response to gemcitabine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gemcitabine stimulus. Gemcitabine is a 2'-deoxycytidine having geminal fluoro substituents in the 2'-position, and is used as a drug in the treatment of various carcinomas. tmpzr1t_l9r_go_relaxed.owl response to 2',2'-difluorodeoxycytidine|response to 2'-deoxy-2',2'-difluorocytidine Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T01:36:03Z biological_process owl:Class GO:0120162 biolink:NamedThing positive regulation of cold-induced thermogenesis Any process that activates or increases the frequency, rate or extent of cold-induced thermogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of CIT krc 2018-05-14T17:14:51Z biological_process owl:Class GO:0018517 biolink:NamedThing phthalate 4,5-cis-dihydrodiol dehydrogenase activity Catalysis of the reaction: cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylate + NAD(+) = 4,5-dihydroxyphthalate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cis-4,5-dihydroxycyclohexa-1(6),2-diene-1,2-dicarboxylate:NAD+ oxidoreductase activity RHEA:13837|EC:1.3.1.64|KEGG_REACTION:R05275|UM-BBD_reactionID:r0142|MetaCyc:1.3.1.64-RXN molecular_function owl:Class GO:0051999 biolink:NamedThing mannosyl-inositol phosphorylceramide biosynthetic process The chemical reactions and pathways resulting in the formation of mannosyl-inositol phosphorylceramide, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group which contains a phosphoryl (-P(O)=) groups and a mannose derivative. tmpzr1t_l9r_go_relaxed.owl mannosyl-inositol phosphorylceramide synthesis|mannosyl-inositol phosphorylceramide anabolism|mannose-inositol-P-ceramide (MIPC) biosynthetic process|MIPC biosynthetic process|mannose inositol phosphoceramide biosynthetic process|mannosyl-inositol phosphorylceramide biosynthesis|mannosyl-inositol phosphorylceramide formation ai 2010-07-20T10:16:26Z biological_process owl:Class GO:0006675 biolink:NamedThing mannosyl-inositol phosphorylceramide metabolic process The chemical reactions and pathways involving mannosyl-inositol phosphorylceramide, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group which contains a phosphoryl (-P(O)=) groups and a mannose derivative. tmpzr1t_l9r_go_relaxed.owl MIPC metabolism|mannose-inositol-P-ceramide (MIPC) metabolism|mannose inositol phosphoceramide metabolism|mannose inositol phosphoceramide metabolic process|mannosyl-inositol-phosphorylceramide metabolism|mannose-inositol-P-ceramide (MIPC) metabolic process|MIPC metabolic process biological_process owl:Class GO:0034880 biolink:NamedThing citrazinate dehydrogenase activity Catalysis of the reaction: citrazinate + H2O = 2,3,6-trihydroxyisonicotinate + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1339 molecular_function owl:Class GO:0016721 biolink:NamedThing oxidoreductase activity, acting on superoxide radicals as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a superoxide radical (O2- or O2.-) acts as a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.15.-.- molecular_function owl:Class GO:0044547 biolink:NamedThing DNA topoisomerase binding Binding to a DNA topoisomerase. tmpzr1t_l9r_go_relaxed.owl DNA topoisomerase I binding jl 2012-03-22T02:30:37Z GO:0017033 molecular_function owl:Class GO:0019899 biolink:NamedThing enzyme binding Binding to an enzyme, a protein with catalytic activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042209 biolink:NamedThing orcinol catabolic process The chemical reactions and pathways resulting in the breakdown of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants. tmpzr1t_l9r_go_relaxed.owl orcinol catabolism|orcinol breakdown|orcin catabolism|orcin catabolic process|orcinol degradation UM-BBD_pathwayID:orc biological_process owl:Class GO:0018940 biolink:NamedThing orcinol metabolic process The chemical reactions and pathways involving orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen, and synthesized, probably as a fungicide, by some higher plants. tmpzr1t_l9r_go_relaxed.owl orcinol metabolism|orcin metabolic process|orcin metabolism MetaCyc:P342-PWY|UM-BBD_pathwayID:orc biological_process owl:Class GO:0106072 biolink:NamedThing negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of adenylate cyclase-activating G-protein coupled receptor signaling pathway hjd 2017-11-28T18:41:31Z biological_process owl:Class GO:0008593 biolink:NamedThing regulation of Notch signaling pathway Any process that modulates the frequency, rate or extent of the Notch signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of N signalling pathway|regulation of N signaling pathway|regulation of Notch signalling pathway biological_process owl:Class GO:0001768 biolink:NamedThing establishment of T cell polarity The directed orientation of T cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with antigen presenting cell. tmpzr1t_l9r_go_relaxed.owl T cell polarization|establishment of T lymphocyte polarity|establishment of T-lymphocyte polarity|establishment of T-cell polarity|T-cell polarization|T lymphocyte polarization biological_process owl:Class GO:0001767 biolink:NamedThing establishment of lymphocyte polarity The directed orientation of lymphocyte signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with an appropriate activating cell. tmpzr1t_l9r_go_relaxed.owl lymphocyte polarization biological_process owl:Class GO:1901188 biolink:NamedThing negative regulation of ephrin receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of ephrin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of ephrin receptor signaling pathway|down-regulation of ephrin receptor signaling pathway|down regulation of ephrin receptor signaling pathway|inhibition of Eph receptor signaling pathway|down regulation of Eph receptor signaling pathway|downregulation of Eph receptor signaling pathway|negative regulation of Eph receptor signalling pathway|negative regulation of Eph receptor signaling pathway|down regulation of Eph receptor signalling pathway|down-regulation of Eph receptor signaling pathway|downregulation of ephrin receptor signaling pathway|downregulation of Eph receptor signalling pathway|down-regulation of Eph receptor signalling pathway|inhibition of Eph receptor signalling pathway rl 2012-07-24T07:42:14Z biological_process owl:Class GO:1901187 biolink:NamedThing regulation of ephrin receptor signaling pathway Any process that modulates the frequency, rate or extent of ephrin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Eph receptor signaling pathway|regulation of Eph receptor signalling pathway rl 2012-07-24T07:41:49Z biological_process owl:Class GO:0016782 biolink:NamedThing transferase activity, transferring sulphur-containing groups Catalysis of the transfer of a sulfur-containing group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20486 EC:2.8.-.- molecular_function owl:Class GO:0090179 biolink:NamedThing planar cell polarity pathway involved in neural tube closure The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors that modulates the establishment of planar polarity contributing to neural tube closure. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-14T11:20:27Z biological_process owl:Class GO:0060071 biolink:NamedThing Wnt signaling pathway, planar cell polarity pathway The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity. tmpzr1t_l9r_go_relaxed.owl non-canonical Wnt signaling pathway|Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signalling pathway, planar cell polarity pathway|PCP pathway|Wnt-activated signaling pathway, planar cell polarity pathway|planar cell polarity pathway|Wnt-JNK signaling pathway|Wnt-PCP signaling pathway biological_process owl:Class GO:0042302 biolink:NamedThing structural constituent of cuticle The action of a molecule that contributes to the structural integrity of a cuticle. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072298 biolink:NamedThing regulation of metanephric glomerulus development Any process that modulates the rate, frequency or extent of metanephric glomerulus development, the progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:14Z biological_process owl:Class GO:0001656 biolink:NamedThing metanephros development The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018884 biolink:NamedThing carbazole metabolic process The chemical reactions and pathways involving carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen. tmpzr1t_l9r_go_relaxed.owl CAR metabolism|CAR metabolic process|carbazole metabolism UM-BBD_pathwayID:car biological_process owl:Class GO:0017015 biolink:NamedThing regulation of transforming growth factor beta receptor signaling pathway Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of transforming growth factor beta receptor signalling pathway|regulation of TGFbeta receptor signaling pathway|regulation of TGF-beta receptor signaling pathway biological_process owl:Class GO:1903844 biolink:NamedThing regulation of cellular response to transforming growth factor beta stimulus Any process that modulates the frequency, rate or extent of cellular response to transforming growth factor beta stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to TGFbeta stimulus|regulation of cellular response to TGF-beta stimulus rph 2015-01-23T11:25:11Z biological_process owl:Class GO:0048076 biolink:NamedThing regulation of compound eye pigmentation Any process that modulates the frequency, rate or extent of establishment of a pattern of pigment in the compound eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990631 biolink:NamedThing ErbB-4 class receptor binding Binding to the protein-tyrosine kinase receptor ErbB-4/HER4. tmpzr1t_l9r_go_relaxed.owl HER4 receptor binding sl 2015-02-06T23:28:49Z molecular_function owl:Class GO:0044241 biolink:NamedThing lipid digestion The whole of the physical, chemical, and biochemical processes carried out by living organisms to break down ingested lipids into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007586 biolink:NamedThing digestion The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Digestion biological_process owl:Class GO:0050976 biolink:NamedThing detection of mechanical stimulus involved in sensory perception of touch The series of events involved in the perception of touch in which a mechanical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory detection of mechanical stimulus during perception of touch|sensory transduction of mechanical stimulus during perception of touch|perception of touch, sensory transduction of mechanical stimulus|perception of touch, detection of mechanical stimulus|perception of touch, sensory detection of mechanical stimulus|tactition, sensory detection of mechanical stimulus biological_process owl:Class GO:0050982 biolink:NamedThing detection of mechanical stimulus The series of events by which a mechanical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090414 biolink:NamedThing molybdate ion export from vacuole The directed movement of molybdate ions out of the vacuole. tmpzr1t_l9r_go_relaxed.owl tb 2011-09-15T02:08:43Z biological_process owl:Class GO:0098661 biolink:NamedThing inorganic anion transmembrane transport The process in which an inorganic anion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl inorganic anion membrane transport|transmembrane inorganic anion transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0001926 biolink:NamedThing positive regulation of B-1 B cell differentiation Any process that activates or increases the frequency, rate or extent of B-1 B cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of B-1 B cell differentiation|positive regulation of B-1 B-lymphocyte differentiation|positive regulation of B-1 B cell development|stimulation of B-1 B cell differentiation|upregulation of B-1 B cell differentiation|positive regulation of B-1 B-cell differentiation|up-regulation of B-1 B cell differentiation|activation of B-1 B cell differentiation|positive regulation of B-1 B lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0030683 biolink:NamedThing mitigation of host immune response by virus A process by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host immune response|negative regulation by virus of extracellular antiviral response|evasion by virus of host immune response|viral inhibition of intracellular antiviral response|negative regulation of host intracellular antiviral response by virus|suppression of host intracellular antiviral response by virus|negative regulation by virus of intracellular antiviral response|suppression by virus of host extracellular antiviral response|suppression of host extracellular antiviral response by virus|negative regulation of host extracellular antiviral response by virus|suppression by virus of host intracellular antiviral response|evasion or tolerance by virus of host immune response|inhibition of extracellular antiviral response|mitigation by virus of host immune response GO:0019052|GO:0019053 biological_process owl:Class GO:0019049 biolink:NamedThing mitigation of host defenses by virus A process by which a virus avoids or tolerates the effects of its host organism's defenses. Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl viral host defence evasion|viral host defense evasion|evasion or tolerance of host defenses by virus|evasion of host defenses by virus biological_process owl:Class GO:0097126 biolink:NamedThing cyclin B2-CDK1 complex A protein complex consisting of cyclin B2 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:46:17Z cellular_component owl:Class GO:0000307 biolink:NamedThing cyclin-dependent protein kinase holoenzyme complex Cyclin-dependent protein kinases (CDKs) are enzyme complexes that contain a kinase catalytic subunit associated with a regulatory cyclin partner. tmpzr1t_l9r_go_relaxed.owl CDK holoenzyme cellular_component owl:Class GO:0005521 biolink:NamedThing lamin binding Binding to lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl lamin/chromatin binding molecular_function owl:Class GO:1901035 biolink:NamedThing negative regulation of L-glutamine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-glutamine import into a cell. tmpzr1t_l9r_go_relaxed.owl down regulation of L-glutamine uptake|downregulation of L-glutamine uptake|negative regulation of L-glutamine uptake|downregulation of L-glutamine import|down-regulation of L-glutamine import|inhibition of L-glutamine import|inhibition of L-glutamine uptake|down-regulation of L-glutamine uptake|negative regulation of L-glutamine import|down regulation of L-glutamine import al 2012-06-21T07:31:48Z biological_process owl:Class GO:1901034 biolink:NamedThing regulation of L-glutamine import across plasma membrane Any process that modulates the frequency, rate or extent of L-glutamine import into cell. tmpzr1t_l9r_go_relaxed.owl regulation of L-glutamine import|regulation of L-glutamine uptake al 2012-06-21T07:31:27Z biological_process owl:Class GO:0039650 biolink:NamedThing suppression by virus of host cysteine-type endopeptidase activity involved in apoptotic process Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host caspase activity. Caspases are cysteine-type endopeptidases which contribute to the apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of host caspases by virus bf 2012-10-09T15:30:48Z biological_process owl:Class GO:0019050 biolink:NamedThing suppression by virus of host apoptotic process Any viral process that inhibits apoptosis of infected host cells, facilitating prolonged cell survival during viral replication. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host apoptosis|suppression of apoptosis in host by virus|negative regulation of apoptosis by virus|suppression by virus of host apoptosis biological_process owl:Class GO:0061913 biolink:NamedThing positive regulation of growth plate cartilage chondrocyte proliferation Any process that increases the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl dph 2017-07-10T17:31:09Z biological_process owl:Class GO:0003420 biolink:NamedThing regulation of growth plate cartilage chondrocyte proliferation Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T09:07:40Z biological_process owl:Class GO:1904901 biolink:NamedThing positive regulation of myosin II filament organization Any process that activates or increases the frequency, rate or extent of myosin II filament organization. tmpzr1t_l9r_go_relaxed.owl upregulation of myosin II filament organization|activation of myosin II polymerization or depolymerization|activation of myosin II filament assembly or disassembly|up-regulation of myosin II filament assembly or disassembly|upregulation of myosin II polymerization or depolymerization|up-regulation of myosin II filament organization|upregulation of myosin II filament assembly or disassembly|activation of myosin II filament organisation|up regulation of myosin II filament organization|up regulation of myosin II filament assembly or disassembly|positive regulation of myosin II filament organisation|up regulation of myosin II polymerization or depolymerization|positive regulation of myosin II polymerization or depolymerization|activation of myosin II filament organization|up regulation of myosin II filament organisation|upregulation of myosin II filament organisation|up-regulation of myosin II filament organisation|positive regulation of myosin II filament assembly or disassembly|up-regulation of myosin II polymerization or depolymerization mec 2016-01-15T09:05:02Z biological_process owl:Class GO:0043519 biolink:NamedThing regulation of myosin II filament organization Any process that modulates the frequency, rate or extent of the assembly, arrangement of constituent parts, or disassembly of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl regulation of myosin II filament assembly or disassembly|regulation of myosin II filament organisation biological_process owl:Class GO:0002579 biolink:NamedThing positive regulation of antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl stimulation of antigen processing and presentation|upregulation of antigen processing and presentation|up regulation of antigen processing and presentation|up-regulation of antigen processing and presentation|activation of antigen processing and presentation biological_process owl:Class GO:0016456 biolink:NamedThing X chromosome located dosage compensation complex, transcription activating An RNA-protein complex localized to the X chromosome of males where it is required for the hyper-transcriptional activation of the X chromosome. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl dosage compensation complex cellular_component owl:Class GO:0046536 biolink:NamedThing dosage compensation complex A protein or protein-RNA complex that localizes to one or more of the sex chromosome(s), where it acts to normalize transcription between different sexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018613 biolink:NamedThing 9-fluorenone dioxygenase activity Catalysis of the reaction: 9-fluorenone + 2 NADPH + O2 = 2 NADP+ + 3,4-dihydroxy-3,4-dihydro-9-fluorenone. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0409 molecular_function owl:Class GO:0048688 biolink:NamedThing negative regulation of sprouting of injured axon Any process that stops, prevents, or reduces the frequency, rate or extent of sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl down-regulation of sprouting of injured axon|downregulation of sprouting of injured axon|down regulation of sprouting of injured axon|inhibition of sprouting of injured axon biological_process owl:Class GO:2000092 biolink:NamedThing positive regulation of mesonephric glomerular mesangial cell proliferation Any process that activates or increases the frequency, rate or extent of mesonephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:10:33Z biological_process owl:Class GO:0004020 biolink:NamedThing adenylylsulfate kinase activity Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate. tmpzr1t_l9r_go_relaxed.owl adenylyl-sulphate kinase activity|adenosine phosphosulfate kinase activity|adenylylsulfate kinase (phosphorylating)|5'-phosphoadenosine sulfate kinase activity|APS kinase activity|adenosine 5'-phosphosulfate kinase activity|adenosine-5'-phosphosulphate 3'-phosphotransferase activity|adenylyl-sulfate kinase activity|adenosine-5'-phosphosulfate 3'-phosphotransferase activity|adenosine-5'-phosphosulfate-3'-phosphokinase activity|adenosine phosphosulfokinase activity|ATP:adenylyl-sulfate 3'-phosphotransferase activity Reactome:R-HSA-3560785|RHEA:24152|EC:2.7.1.25|Reactome:R-HSA-174389|MetaCyc:ADENYLYLSULFKIN-RXN molecular_function owl:Class GO:0051445 biolink:NamedThing regulation of meiotic cell cycle Any process that modulates the rate or extent of progression through the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic cell cycle regulation|modulation of meiotic cell cycle progression|regulation of meiotic cell cycle progression|regulation of progression through meiotic cell cycle|meiotic cell cycle modulation|meiotic cell cycle regulator biological_process owl:Class GO:0048150 biolink:NamedThing behavioral response to ether Any process that results in a change in the behavior of an organism as a result of an ether stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural response to ether biological_process owl:Class GO:0030534 biolink:NamedThing adult behavior Behavior in a fully developed and mature organism. tmpzr1t_l9r_go_relaxed.owl adult behavioral response to stimulus|adult behaviour|adult behavioural response to stimulus See also the biological process term 'behavior ; GO:0007610'. biological_process owl:Class GO:0051684 biolink:NamedThing maintenance of Golgi location Any process in which the Golgi is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of Golgi body localization|maintenance of Golgi localization|maintenance of Golgi apparatus localization biological_process owl:Class GO:0051645 biolink:NamedThing Golgi localization Any process in which the Golgi is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl Golgi localisation|establishment and maintenance of Golgi localization|Golgi apparatus localization|Golgi body localization biological_process owl:Class GO:0052735 biolink:NamedThing tRNA (cytosine-3-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 3-methylcytosine. tmpzr1t_l9r_go_relaxed.owl transfer ribonucleate cytosine 3-methyltransferase activity|tRNA (cytosine 3)-methyltransferase activity|S-adenosyl-L-methionine:tRNA (cytosine-3-)-methyltransferase activity|tRNA cytosine 3-methyltransferase activity|tRNA cytosine-3-methyltransferase activity|S-adenosyl-L-methionine:tRNA cytosine-3-methyltransferase activity molecular_function owl:Class GO:0016427 biolink:NamedThing tRNA (cytosine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylcytosine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120168 biolink:NamedThing detection of hot stimulus involved in thermoception The series of events in which a hot stimulus is received and converted into a molecular signal as part of thermoception. tmpzr1t_l9r_go_relaxed.owl thermoception, sensory transduction of heat stimulus|thermoception, sensory detection of hot stimulus|sensory transduction of heat stimulus during thermoception|sensory detection of hot stimulus during thermoception|thermoception, sensory transduction of hot stimulus|thermoception, sensory detection of heat stimulus|sensory transduction of hot stimulus during thermoception|sensory detection of heat stimulus during thermoception krc 2018-05-21T20:35:47Z biological_process owl:Class GO:0050960 biolink:NamedThing detection of temperature stimulus involved in thermoception The series of events in which a temperature stimulus is received and converted into a molecular signal as part of thermoception. tmpzr1t_l9r_go_relaxed.owl thermoception, sensory transduction of thermal stimulus|sensory detection of temperature stimulus during thermoception|sensory transduction of temperature stimulus during thermoception|thermoception, sensory detection of temperature stimulus|sensory detection of thermal stimulus during thermoception|thermoception, sensory detection of thermal stimulus|sensory transduction of thermal stimulus during thermoception|thermoception, sensory transduction of temperature stimulus biological_process owl:Class GO:1900765 biolink:NamedThing emericellin catabolic process The chemical reactions and pathways resulting in the breakdown of emericellin. tmpzr1t_l9r_go_relaxed.owl Variecoxanthone B catabolism|Variecoxanthone B breakdown|Variecoxanthone B catabolic process|emericellin catabolism|emericellin degradation|emericellin breakdown|Variecoxanthone B degradation di 2012-06-04T09:18:22Z biological_process owl:Class GO:1900764 biolink:NamedThing emericellin metabolic process The chemical reactions and pathways involving emericellin. tmpzr1t_l9r_go_relaxed.owl Variecoxanthone B metabolism|emericellin metabolism|Variecoxanthone B metabolic process di 2012-06-04T09:17:58Z biological_process owl:Class GO:0002891 biolink:NamedThing positive regulation of immunoglobulin mediated immune response Any process that activates or increases the frequency, rate, or extent of an immunoglobulin mediated immune response. tmpzr1t_l9r_go_relaxed.owl upregulation of immunoglobulin mediated immune response|activation of immunoglobulin mediated immune response|up-regulation of immunoglobulin mediated immune response|up regulation of immunoglobulin mediated immune response|stimulation of immunoglobulin mediated immune response biological_process owl:Class GO:0002714 biolink:NamedThing positive regulation of B cell mediated immunity Any process that activates or increases the frequency, rate, or extent of B cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl upregulation of B cell mediated immunity|up regulation of B cell mediated immunity|positive regulation of B-lymphocyte mediated immunity|stimulation of B cell mediated immunity|positive regulation of B-cell mediated immunity|positive regulation of B lymphocyte mediated immunity|up-regulation of B cell mediated immunity|activation of B cell mediated immunity biological_process owl:Class GO:0048164 biolink:NamedThing distinct antral spaces stage The stage in oogenesis when the antral spaces become distinct and the first polar body forms. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 7 biological_process owl:Class GO:0022605 biolink:NamedThing mammalian oogenesis stage A reproductive process that is a step in the formation and maturation of an ovum or female gamete from a primordial female germ cell. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis process biological_process owl:Class GO:0086092 biolink:NamedThing regulation of the force of heart contraction by cardiac conduction A cardiac conduction process that modulates the extent of heart contraction, changing the force with which blood is propelled. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-29T01:26:41Z biological_process owl:Class GO:0002026 biolink:NamedThing regulation of the force of heart contraction Any process that modulates the extent of heart contraction, changing the force with which blood is propelled. tmpzr1t_l9r_go_relaxed.owl heart inotropy|cardiac inotropy biological_process owl:Class GO:1901868 biolink:NamedThing ecgonine methyl ester catabolic process The chemical reactions and pathways resulting in the breakdown of ecgonine methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonine methyl ester degradation|ecgonine methyl ester catabolism|ecgonine methyl ester breakdown ms 2013-02-04T11:58:18Z biological_process owl:Class GO:0009702 biolink:NamedThing L-arabinokinase activity Catalysis of the reaction: L-arabinose + ATP = beta-L-arabinose 1-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl L-arabinokinase (phosphorylating)|ATP:L-arabinose 1-phosphotransferase activity KEGG_REACTION:R01754|MetaCyc:L-ARABINOKINASE-RXN|EC:2.7.1.46|RHEA:20153 molecular_function owl:Class GO:0006647 biolink:NamedThing phosphatidyl-N-monomethylethanolamine biosynthetic process The chemical reactions and pathways involving phosphatidyl-N-monomethylethanolamine (PMME), a derivative of phosphatidylethanolamine with a methylated amine group. tmpzr1t_l9r_go_relaxed.owl phosphatidyl-N-monomethylethanolamine formation|phosphatidyl-N-monomethylethanolamine anabolism|PMME biosynthetic process|PMME biosynthesis|phosphatidyl-N-monomethylethanolamine synthesis|phosphatidyl-N-monomethylethanolamine biosynthesis biological_process owl:Class GO:0046468 biolink:NamedThing phosphatidyl-N-monomethylethanolamine metabolic process The chemical reactions and pathways involving phosphatidyl-N-monomethylethanolamine (PMME), a derivative of phosphatidylethanolamine with a methylated amine group. Present in trace levels in plants and slightly higher in bacteria. tmpzr1t_l9r_go_relaxed.owl PMME metabolism|PMME metabolic process|phosphatidyl-N-monomethylethanolamine metabolism biological_process owl:Class GO:0039596 biolink:NamedThing modulation by virus of host protein dephosphorylation Any viral process that modulates the frequency, rate or extent of dephosphorylation of a host protein. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-19T11:46:23Z biological_process owl:Class GO:0035304 biolink:NamedThing regulation of protein dephosphorylation Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid dephosphorylation biological_process owl:Class GO:0005743 biolink:NamedThing mitochondrial inner membrane The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. tmpzr1t_l9r_go_relaxed.owl mitochondrion inner membrane|inner mitochondrial membrane|inner mitochondrion membrane NIF_Subcellular:sao1371347282|Wikipedia:Inner_mitochondrial_membrane cellular_component owl:Class GO:0031966 biolink:NamedThing mitochondrial membrane Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1045389829 cellular_component owl:Class GO:0106090 biolink:NamedThing positive regulation of cell adhesion involved in sprouting angiogenesis Any process that activates or increases the frequency, rate or extent of cell adhesion involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-22T18:31:02Z biological_process owl:Class GO:0031653 biolink:NamedThing heat dissipation Any homeostatic process in which an organism releases excess heat to the environment, thereby lowering its internal temperature. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001659 biolink:NamedThing temperature homeostasis A homeostatic process in which an organism modulates its internal body temperature. tmpzr1t_l9r_go_relaxed.owl thermoregulation Wikipedia:Thermoregulation biological_process owl:Class GO:1901734 biolink:NamedThing quercetin biosynthetic process The chemical reactions and pathways resulting in the formation of quercetin. tmpzr1t_l9r_go_relaxed.owl quercetin biosynthesis|quercetin anabolism|quercetin formation|quercetin synthesis yaf 2013-01-11T10:25:20Z biological_process owl:Class GO:0051553 biolink:NamedThing flavone biosynthetic process The chemical reactions and pathways resulting in the formation of flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone). tmpzr1t_l9r_go_relaxed.owl 2-phenylchromone biosynthetic process|2-phenyl-4H-1-benzopyran-4-one biosynthetic process|2-phenyl-4H-1-benzopyran-4-one biosynthesis|2-phenylchromone biosynthesis biological_process owl:Class GO:1905716 biolink:NamedThing negative regulation of cornification Any process that stops, prevents or reduces the frequency, rate or extent of cornification. tmpzr1t_l9r_go_relaxed.owl down regulation of cornification|inhibition of cornification|downregulation of cornification|down-regulation of cornification pga 2016-11-24T13:53:03Z biological_process owl:Class GO:0043069 biolink:NamedThing negative regulation of programmed cell death Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. tmpzr1t_l9r_go_relaxed.owl inhibition of programmed cell death|down regulation of programmed cell death|negative regulation of non-apoptotic programmed cell death|downregulation of programmed cell death|down-regulation of programmed cell death GO:0043072 biological_process owl:Class GO:0102661 biolink:NamedThing homogentisate solanyltransferase activity Catalysis of the reaction: all-trans-nonaprenyl diphosphate + homogentisate + H+ <=> 2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinone + carbon dioxide + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.117|MetaCyc:RXN-2761|RHEA:37995 molecular_function owl:Class GO:0006971 biolink:NamedThing hypotonic response Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell. tmpzr1t_l9r_go_relaxed.owl hypo-osmotic response biological_process owl:Class GO:0006970 biolink:NamedThing response to osmotic stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl osmotic stress response|osmotic response biological_process owl:Class GO:1905859 biolink:NamedThing negative regulation of heparan sulfate proteoglycan binding Any process that stops, prevents or reduces the frequency, rate or extent of heparan sulfate proteoglycan binding. tmpzr1t_l9r_go_relaxed.owl downregulation of heparin proteoglycan binding|negative regulation of heparin proteoglycan binding|inhibition of heparin proteoglycan binding|down regulation of heparan sulfate proteoglycan binding|down regulation of heparin proteoglycan binding|inhibition of heparan sulfate proteoglycan binding|downregulation of heparan sulfate proteoglycan binding|down-regulation of heparin proteoglycan binding|down-regulation of heparan sulfate proteoglycan binding bc 2017-01-23T14:25:19Z biological_process owl:Class GO:0036105 biolink:NamedThing peroxisome membrane class-1 targeting sequence binding Binding to a class I peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane in a PEX19-dependent manner. tmpzr1t_l9r_go_relaxed.owl PEX19-dependent mPTS binding|class 1 mPTS binding Currently identified mPTSs vary greatly in length, and cannot be distinguished by primary structure analysis, suggesting that the peroxisomal sorting information is not contained within a specific amino acid sequence. There do however appear to be two classes of mPTSs: class 1 mPTSs that are bound by PEX19 and imported in a PEX19-dependent manner, and class 2 mPTSs that are not bound by PEX19 and mediate protein import independently of PEX19. The two classes cannot be defined based on their amino acid sequence. bf 2012-01-27T02:02:22Z molecular_function owl:Class GO:0033328 biolink:NamedThing peroxisome membrane targeting sequence binding Binding to a peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane. tmpzr1t_l9r_go_relaxed.owl PMP targeting signal (mPTS) binding|PMP targeting signal binding|mPTS binding|peroxisomal membrane protein (PMP) targeting signal (mPTS) binding molecular_function owl:Class GO:0031820 biolink:NamedThing P2Y11 nucleotide receptor binding Binding to a P2Y11 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y11 nucleotide receptor ligand molecular_function owl:Class GO:0031811 biolink:NamedThing G protein-coupled nucleotide receptor binding Binding to a G protein-coupled (metabotropic) nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl metabotropic nucleotide receptor ligand|P2Y receptor binding|metabotropic nucleotide receptor binding|G-protein coupled nucleotide receptor binding molecular_function owl:Class GO:0046549 biolink:NamedThing retinal cone cell development Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042462 biolink:NamedThing eye photoreceptor cell development Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000105 biolink:NamedThing positive regulation of DNA-dependent DNA replication Any process that activates or increases the frequency, rate or extent of DNA-dependent DNA replication. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-15T01:37:10Z biological_process owl:Class GO:1903814 biolink:NamedThing regulation of collecting lymphatic vessel constriction Any process that modulates the frequency, rate or extent of collecting lymphatic vessel constriction. tmpzr1t_l9r_go_relaxed.owl regulation of lymphatic vessel myogenic constriction sl 2015-01-16T17:01:49Z biological_process owl:Class GO:0102087 biolink:NamedThing N-benzoyl-L-glutamate synthetase activity Catalysis of the reaction: benzoate + L-glutamate + ATP <=> H+ + N-benzoyl-L-glutamate + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10886 molecular_function owl:Class GO:0009486 biolink:NamedThing cytochrome bo3 ubiquinol oxidase activity Catalysis of the reaction: 2 ubiquinol + O2 + 4 H+ = 2 ubiquinone + 2 H2O + 4 H+ [periplasmic space]. tmpzr1t_l9r_go_relaxed.owl cytochrome bo(3) oxidase|cytochrome o ubiquinol oxidase activity|cytochrome bo oxidase https://github.com/geneontology/go-ontology/issues/20924 RHEA:30251|TC:3.D.4.5.1|EC:7.1.1.3|MetaCyc:RXN0-5268 GO:0008827 molecular_function owl:Class GO:0060424 biolink:NamedThing lung field specification The process that results in the delineation of a specific region of the foregut into the area in which the lung will develop. tmpzr1t_l9r_go_relaxed.owl lung specification biological_process owl:Class GO:0002421 biolink:NamedThing B cell antigen processing and presentation following pinocytosis B cell antigen processing and presentation which is initiated by uptake of antigen via pinocytosis. tmpzr1t_l9r_go_relaxed.owl B lymphocyte antigen processing and presentation following pinocytosis|B-cell antigen processing and presentation following pinocytosis|B-lymphocyte antigen processing and presentation following pinocytosis biological_process owl:Class GO:0002746 biolink:NamedThing antigen processing and presentation following pinocytosis Antigen processing and presentation which is initiated by uptake of antigen via pinocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000928 biolink:NamedThing negative regulation of cellodextrin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellodextrin catabolism tt 2011-08-01T12:41:33Z biological_process owl:Class GO:0009895 biolink:NamedThing negative regulation of catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances. tmpzr1t_l9r_go_relaxed.owl negative regulation of catabolism|inhibition of catabolic process|negative regulation of degradation|downregulation of catabolic process|negative regulation of breakdown|down-regulation of catabolic process|down regulation of catabolic process biological_process owl:Class GO:0019209 biolink:NamedThing kinase activator activity Binds to and increases the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032731 biolink:NamedThing positive regulation of interleukin-1 beta production Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-1 beta production|upregulation of interleukin-1 beta production|up-regulation of interleukin-1 beta production|positive regulation of interleukin-1 beta secretion|activation of interleukin-1 beta production|up regulation of interleukin-1 beta production|stimulation of interleukin-1 beta production|positive regulation of interleukin-1 beta biosynthetic process GO:0050725|GO:0050718 biological_process owl:Class GO:0052841 biolink:NamedThing inositol bisdiphosphate tetrakisphosphate diphosphatase activity Catalysis of the reaction: inositol bisdiphosphate tetrakisphosphate + H2O = inositol diphosphate pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855165|Reactome:R-HSA-2023973 ai 2011-11-29T04:14:22Z molecular_function owl:Class GO:0009069 biolink:NamedThing serine family amino acid metabolic process The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. tmpzr1t_l9r_go_relaxed.owl serine family amino acid metabolism biological_process owl:Class GO:1901605 biolink:NamedThing alpha-amino acid metabolic process The chemical reactions and pathways involving an alpha-amino acid. tmpzr1t_l9r_go_relaxed.owl alpha-amino acid metabolism tb 2012-11-08T17:39:50Z biological_process owl:Class GO:0032121 biolink:NamedThing meiotic attachment of telomeric heterochromatin to spindle pole body The meiotic cell cycle process in which physical connections are formed between telomeric heterochromatin and the spindle pole body, facilitating bouquet formation. tmpzr1t_l9r_go_relaxed.owl attachment of telomeres to spindle pole body|attachment of telomeric chromatin to spindle pole body biological_process owl:Class GO:0003197 biolink:NamedThing endocardial cushion development The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:17:43Z biological_process owl:Class GO:0060485 biolink:NamedThing mesenchyme development The process whose specific outcome is the progression of a mesenchymal tissue over time, from its formation to the mature structure. A mesenchymal tissue is made up of loosely packed stellate cells. tmpzr1t_l9r_go_relaxed.owl mesenchymal development biological_process owl:Class GO:0001915 biolink:NamedThing negative regulation of T cell mediated cytotoxicity Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-cell mediated cytolysis|down regulation of T cell mediated cytotoxicity|negative regulation of T cell mediated cell killing|negative regulation of T lymphocyte mediated cytotoxicity|negative regulation of T cell mediated cytolysis|negative regulation of T-lymphocyte mediated cytotoxicity|negative regulation of T-cell mediated cytotoxicity|down-regulation of T cell mediated cytotoxicity|downregulation of T cell mediated cytotoxicity|negative regulation of T cell mediated cell death|negative regulation of T-cell mediated apoptosis|negative regulation of T-cell mediated cell killing|negative regulation of T cell mediated apoptosis|negative regulation of T-cell mediated cell death|inhibition of T cell mediated cytotoxicity biological_process owl:Class GO:0046315 biolink:NamedThing phosphocreatine catabolic process The chemical reactions and pathways resulting in the breakdown of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase. tmpzr1t_l9r_go_relaxed.owl phosphocreatine breakdown|phosphocreatine degradation|phosphocreatine catabolism biological_process owl:Class GO:0042397 biolink:NamedThing phosphagen catabolic process The chemical reactions and pathways resulting in the breakdown of phosphagen, any of a group of guanidine phosphates that occur in muscle and can be used to regenerate ATP from ADP during muscular contraction. tmpzr1t_l9r_go_relaxed.owl phosphagen degradation|phosphagen catabolism|phosphagen breakdown biological_process owl:Class GO:0050011 biolink:NamedThing itaconyl-CoA hydratase activity Catalysis of the reaction: citramalyl-CoA = itaconyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl itaconyl coenzyme A hydratase activity|citramalyl-CoA hydro-lyase activity|citramalyl-CoA hydro-lyase (itaconyl-CoA-forming) EC:4.2.1.56|MetaCyc:ITACONYL-COA-HYDRATASE-RXN|RHEA:13785 molecular_function owl:Class GO:1904857 biolink:NamedThing regulation of endothelial cell chemotaxis to vascular endothelial growth factor Any process that modulates the frequency, rate or extent of endothelial cell chemotaxis to vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl rph 2015-12-16T11:47:44Z biological_process owl:Class GO:0097444 biolink:NamedThing spine apparatus A specialization of the endomembrane system found in some classes of dendritic spines consisting of two or more closely apposed lamellae with interspersed electron dense material. The endomembrane component is continuous with the smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl dense material NIF_Subcellular:sao725931194 pr 2012-12-06T14:05:58Z cellular_component owl:Class GO:0043227 biolink:NamedThing membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl membrane-enclosed organelle NIF_Subcellular:sao414196390 cellular_component owl:Class GO:0035173 biolink:NamedThing histone kinase activity Catalysis of the transfer of a phosphate group to a histone. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004672 biolink:NamedThing protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. tmpzr1t_l9r_go_relaxed.owl protamine kinase activity Reactome:R-HSA-975139|Reactome:R-HSA-9673284|Reactome:R-HSA-156832|MetaCyc:PROTEIN-KINASE-RXN|Reactome:R-HSA-937034|Reactome:R-HSA-9604606 Note that triphosphate is used as a phosphate donor by at least one kinase. GO:0050222 molecular_function owl:Class GO:0072078 biolink:NamedThing nephron tubule morphogenesis The process in which the anatomical structures of a nephron tubule are generated and organized. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:25:14Z biological_process owl:Class GO:0061333 biolink:NamedThing renal tubule morphogenesis The process in which the renal tubule is generated by specification of cell fate, through the maintenance of cell polarity, regulated cell proliferation and morphogenetic cell rearrangements, shape changes and growth. A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T01:43:04Z biological_process owl:Class GO:0032804 biolink:NamedThing negative regulation of low-density lipoprotein particle receptor catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors. tmpzr1t_l9r_go_relaxed.owl down-regulation of low-density lipoprotein receptor catabolic process|downregulation of low-density lipoprotein receptor catabolic process|negative regulation of low-density lipoprotein receptor catabolism|negative regulation of low-density lipoprotein receptor degradation|negative regulation of low-density lipoprotein receptor catabolic process|negative regulation of low-density lipoprotein receptor breakdown|inhibition of low-density lipoprotein receptor catabolic process|down regulation of low-density lipoprotein receptor catabolic process biological_process owl:Class GO:0032803 biolink:NamedThing regulation of low-density lipoprotein particle receptor catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein particle receptors. tmpzr1t_l9r_go_relaxed.owl regulation of low-density lipoprotein receptor catabolic process|regulation of LDLr catabolic process|regulation of low-density lipoprotein receptor degradation|regulation of LDLr catabolism|regulation of low-density lipoprotein receptor catabolism|regulation of low-density lipoprotein receptor breakdown biological_process owl:Class GO:0098526 biolink:NamedThing inhibitory neuromuscular junction of somatic myotube A neuromuscular junction that functions in the inhibition of somatic muscle myotube contraction. Examples of somatic muscle myotubes include the somatic muscle cells of arthropods. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-14T12:06:43Z cellular_component owl:Class GO:0098521 biolink:NamedThing inhibitory neuromuscular junction The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential that inhibits muscle contraction. tmpzr1t_l9r_go_relaxed.owl Inhibitory neuromuscular junctions are found in arthropods but not in vertebrates. dos 2013-10-14T12:04:08Z cellular_component owl:Class GO:0060049 biolink:NamedThing regulation of protein glycosylation Any process that modulates the frequency, rate or extent of protein glycosylation. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid glycosylation biological_process owl:Class GO:0099555 biolink:NamedThing trans-synaptic signaling by nitric oxide, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, via the release and reception of nitric oxide molecules, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0004622 biolink:NamedThing lysophospholipase activity Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate. tmpzr1t_l9r_go_relaxed.owl lysophosphatidase activity|lecitholipase activity|lecithinase B activity|phospholipase B activity|lysolecithinase activity|lysophopholipase L2|lysophosphatidylcholine hydrolase activity|2-lysophosphatidylcholine acylhydrolase activity|lysophospholipase A1|phosphatidase B RHEA:15177|MetaCyc:LYSOPHOSPHOLIPASE-RXN|Reactome:R-HSA-1482545|Reactome:R-HSA-1482696|Reactome:R-HSA-6814766|Reactome:R-HSA-6814254|Reactome:R-HSA-1482571|EC:3.1.1.5|Reactome:R-HSA-8847912|Reactome:R-HSA-1482685|Reactome:R-HSA-6814778|Reactome:R-HSA-1482612|Reactome:R-HSA-1482629 GO:0045126 molecular_function owl:Class GO:0005858 biolink:NamedThing axonemal dynein complex A dynein complex found in eukaryotic cilia and flagella; the motor domain heads interact with adjacent microtubules to generate a sliding force which is converted to a bending motion. tmpzr1t_l9r_go_relaxed.owl axonemal dynein heavy chain|axonemal dynein intermediate light chain|axonemal dynein light chain|axonemal dynein intermediate chain cellular_component owl:Class GO:0030286 biolink:NamedThing dynein complex Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008397 biolink:NamedThing sterol 12-alpha-hydroxylase activity Catalysis of the reaction: a steroid + donor-H2 + O2 = 12-alpha-hydroxysteroid + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP8B1 molecular_function owl:Class GO:0008395 biolink:NamedThing steroid hydroxylase activity Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2G1|olfactory-specific steroid hydroxylase activity Reactome:R-HSA-193965|Reactome:R-HSA-193143|Reactome:R-HSA-193713|Reactome:R-HSA-193393|Reactome:R-HSA-193780|Reactome:R-HSA-193460|Reactome:R-HSA-192042|Reactome:R-HSA-193497|Reactome:R-HSA-191983|Reactome:R-HSA-193787|Reactome:R-HSA-192123|Reactome:R-HSA-193737|Reactome:R-HSA-193719|Reactome:R-HSA-193060|Reactome:R-HSA-6785245|RHEA:43836|Reactome:R-HSA-193995|Reactome:R-HSA-193792|Reactome:R-HSA-9035960|Reactome:R-HSA-192054|Reactome:R-HSA-5601849|Reactome:R-HSA-6785244|Reactome:R-HSA-191999|Reactome:R-HSA-5602170 GO:0008394 molecular_function owl:Class GO:0043536 biolink:NamedThing positive regulation of blood vessel endothelial cell migration Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels. tmpzr1t_l9r_go_relaxed.owl up regulation of blood vessel endothelial cell migration|stimulation of blood vessel endothelial cell migration|upregulation of blood vessel endothelial cell migration|up-regulation of blood vessel endothelial cell migration|activation of blood vessel endothelial cell migration biological_process owl:Class GO:0043535 biolink:NamedThing regulation of blood vessel endothelial cell migration Any process that modulates the frequency, rate or extent of the migration of the endothelial cells of blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002700 biolink:NamedThing regulation of production of molecular mediator of immune response Any process that modulates the frequency, rate, or extent of the production of molecular mediator of immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902641 biolink:NamedThing regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process Any process that modulates the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown di 2014-01-21T17:54:14Z biological_process owl:Class GO:0043972 biolink:NamedThing histone H3-K23 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 23 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K23 acetylation|histone H3 acetylation at K23 biological_process owl:Class GO:0043966 biolink:NamedThing histone H3 acetylation The modification of histone H3 by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032597 biolink:NamedThing B cell receptor transport into membrane raft The directed movement of a B cell receptor into a membrane raft. tmpzr1t_l9r_go_relaxed.owl BCR transport into membrane raft|B cell receptor translocation into membrane raft|B cell receptor transport into lipid raft|BCR translocation into membrane raft biological_process owl:Class GO:0032595 biolink:NamedThing B cell receptor transport within lipid bilayer The directed movement of a B cell receptor within a lipid bilayer. tmpzr1t_l9r_go_relaxed.owl B cell receptor translocation within membrane|BCR translocation within membrane|BCR transport within lipid bilayer biological_process owl:Class GO:0032617 biolink:NamedThing interleukin-14 production The appearance of interleukin-14 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-14 secretion|interleukin-14 biosynthetic process|IL-14 production GO:0042232|GO:0072612 biological_process owl:Class GO:0042451 biolink:NamedThing purine nucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine nucleoside biosynthesis|purine nucleoside formation|purine nucleoside anabolism|purine nucleoside synthesis biological_process owl:Class GO:0042856 biolink:NamedThing eugenol catabolic process The chemical reactions and pathways resulting in the breakdown of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil. tmpzr1t_l9r_go_relaxed.owl eugenol degradation|eugenol catabolism|eugenol breakdown|eugenic acid catabolism|4-allyl-2-methoxyphenol catabolism|eugenic acid catabolic process|4-allyl-2-methoxyphenol catabolic process biological_process owl:Class GO:0140237 biolink:NamedThing translation at presynapse, modulating chemical synaptic transmission Translation that occurs at the presynapse, and that modulates chemical synaptic transmission. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/216 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-13T13:07:23Z biological_process owl:Class GO:0140236 biolink:NamedThing translation at presynapse Translation that occurs at the presynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/216 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-13T13:00:33Z biological_process owl:Class GO:0090268 biolink:NamedThing activation of mitotic cell cycle spindle assembly checkpoint Any process that starts the inactive process of a mitotic cell cycle spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:09:44Z biological_process owl:Class GO:0090267 biolink:NamedThing positive regulation of mitotic cell cycle spindle assembly checkpoint Any process that increases the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:09:44Z biological_process owl:Class GO:0042930 biolink:NamedThing enterobactin transport The directed movement of the siderochrome enterobactin, a cyclic trimer of 2, 3 dihydroxybenzoylserine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl enterochelin transport biological_process owl:Class GO:0015891 biolink:NamedThing siderophore transport The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl siderochrome transport|siderophore-iron transport|iron-siderochrome transport|iron-siderophore transport GO:0015892 biological_process owl:Class GO:0006015 biolink:NamedThing 5-phosphoribose 1-diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate. tmpzr1t_l9r_go_relaxed.owl 5-phosphoribose 1-diphosphate biosynthesis|5-phosphoribose 1-diphosphate anabolism|5-phosphoribose 1-diphosphate formation|5-phosphoribosyl-1-pyrophosphate biosynthesis|5-phosphoribose 1-diphosphate synthesis|5-phosphoribosyl-1-pyrophosphate biosynthetic process|PRPP biosynthetic process MetaCyc:PWY0-661 biological_process owl:Class GO:0046390 biolink:NamedThing ribose phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar. tmpzr1t_l9r_go_relaxed.owl ribose phosphate formation|ribose phosphate biosynthesis|ribose phosphate synthesis|ribose phosphate anabolism biological_process owl:Class GO:0050366 biolink:NamedThing tyramine N-feruloyltransferase activity Catalysis of the reaction: feruloyl-CoA + tyramine = CoA + N-feruloyltyramine. tmpzr1t_l9r_go_relaxed.owl feruloyl-CoA tyramine N-feruloyl-CoA transferase activity|feruloyltyramine synthase activity|feruloyl-CoA:tyramine N-(hydroxycinnamoyl)transferase activity|tyramine feruloyltransferase activity|tyramine N-feruloyl-CoA transferase activity MetaCyc:TYRAMINE-N-FERULOYLTRANSFERASE-RXN|EC:2.3.1.110|RHEA:19685 molecular_function owl:Class GO:0033490 biolink:NamedThing cholesterol biosynthetic process via lathosterol The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate lathosterol. tmpzr1t_l9r_go_relaxed.owl cholesterol synthesis via lathosterol|cholesterol anabolism via lathosterol|cholesterol formation via lathosterol|cholesterol biosynthesis via lathosterol MetaCyc:PWY66-341 biological_process owl:Class GO:0006695 biolink:NamedThing cholesterol biosynthetic process The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl cholesterol formation|cholesterol biosynthesis|cholesterol synthesis|cholesterol anabolism biological_process owl:Class GO:0042448 biolink:NamedThing progesterone metabolic process The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants. tmpzr1t_l9r_go_relaxed.owl progesterone metabolism biological_process owl:Class GO:0120254 biolink:NamedThing olefinic compound metabolic process The chemical reactions and pathways involving an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C). tmpzr1t_l9r_go_relaxed.owl alkene substituted compound metabolic process|alkene substituted compound metabolism https://github.com/geneontology/go-ontology/issues/19936 krc 2020-09-02T23:13:44Z biological_process owl:Class GO:0006222 biolink:NamedThing UMP biosynthetic process The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate. tmpzr1t_l9r_go_relaxed.owl UMP biosynthesis|UMP formation|UMP synthesis|UMP anabolism biological_process owl:Class GO:0009220 biolink:NamedThing pyrimidine ribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleotide synthesis|pyrimidine ribonucleotide biosynthesis|pyrimidine ribonucleotide formation|pyrimidine ribonucleotide anabolism MetaCyc:PWY0-162 biological_process owl:Class GO:1900372 biolink:NamedThing negative regulation of purine nucleotide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide biosynthetic processes. tmpzr1t_l9r_go_relaxed.owl negative regulation of purine nucleotide anabolism|inhibition of purine nucleotide formation|down-regulation of purine nucleotide biosynthetic process|down regulation of purine nucleotide formation|downregulation of purine nucleotide biosynthetic process|down-regulation of purine nucleotide anabolism|inhibition of purine nucleotide biosynthesis|downregulation of purine nucleotide synthesis|down regulation of purine nucleotide anabolism|negative regulation of purine nucleotide biosynthesis|downregulation of purine nucleotide formation|down regulation of purine nucleotide biosynthetic process|down-regulation of purine nucleotide formation|down-regulation of purine nucleotide biosynthesis|inhibition of purine nucleotide biosynthetic process|downregulation of purine nucleotide biosynthesis|inhibition of purine nucleotide synthesis|down regulation of purine nucleotide biosynthesis|down regulation of purine nucleotide synthesis|downregulation of purine nucleotide anabolism|down-regulation of purine nucleotide synthesis|inhibition of purine nucleotide anabolism|negative regulation of purine nucleotide formation|negative regulation of purine nucleotide synthesis krc 2012-04-17T12:32:27Z biological_process owl:Class GO:1900543 biolink:NamedThing negative regulation of purine nucleotide metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of purine metabolic process|down regulation of purine nucleotide metabolism|downregulation of purine nucleotide metabolic process|negative regulation of purine nucleotide metabolism|down-regulation of purine metabolism|inhibition of purine nucleotide metabolic process|negative regulation of purine metabolism|downregulation of purine metabolism|down-regulation of purine nucleotide metabolic process|downregulation of purine nucleotide metabolism|down regulation of purine nucleotide metabolic process|down-regulation of purine nucleotide metabolism|inhibition of purine metabolism|down regulation of purine metabolic process|downregulation of purine metabolic process|inhibition of purine metabolic process|down-regulation of purine metabolic process|down regulation of purine metabolism|inhibition of purine nucleotide metabolism krc 2012-05-11T05:44:21Z biological_process owl:Class GO:0048878 biolink:NamedThing chemical homeostasis Any biological process involved in the maintenance of an internal steady state of a chemical. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140108 biolink:NamedThing high-affinity glucose transmembrane transporter activity Enables the transfer of glucose from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14212 pg 2017-10-12T10:06:19Z molecular_function owl:Class GO:0005355 biolink:NamedThing glucose transmembrane transporter activity Enables the transfer of the hexose monosaccharide glucose from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl galactose/glucose (methylgalactoside) porter activity|lactose/glucose efflux transporter activity|glucose permease activity Reactome:R-HSA-5653873|Reactome:R-HSA-499981 GO:0015579 molecular_function owl:Class GO:1905872 biolink:NamedThing negative regulation of protein localization to cell leading edge Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell leading edge. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localization in cell leading edge|down-regulation of protein localisation in cell leading edge|down regulation of protein localisation to cell leading edge|downregulation of protein localisation to cell leading edge|downregulation of protein localization in cell leading edge|down-regulation of protein localization in cell leading edge|down-regulation of protein localization to cell leading edge|negative regulation of protein localisation to cell leading edge|down regulation of protein localization to cell leading edge|inhibition of protein localisation in cell leading edge|downregulation of protein localisation in cell leading edge|inhibition of protein localization to cell leading edge|downregulation of protein localization to cell leading edge|down regulation of protein localization in cell leading edge|down regulation of protein localisation in cell leading edge|down-regulation of protein localisation to cell leading edge|negative regulation of protein localisation in cell leading edge|inhibition of protein localization in cell leading edge|inhibition of protein localisation to cell leading edge sl 2017-01-27T19:35:04Z biological_process owl:Class GO:0001016 biolink:NamedThing RNA polymerase III transcription regulatory region sequence-specific DNA binding Binding to a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III regulatory region DNA binding krc 2010-08-19T09:36:17Z molecular_function owl:Class GO:0000976 biolink:NamedThing transcription cis-regulatory region binding Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. tmpzr1t_l9r_go_relaxed.owl transcription regulatory region sequence-specific DNA binding|transcription regulatory region DNA binding|regulatory region DNA binding|bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding|eubacterial-type RNA polymerase regulatory region DNA binding|bacterial-type RNA polymerase regulatory region DNA binding|eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding https://github.com/geneontology/go-ontology/issues/20791|https://github.com/geneontology/go-ontology/issues/19312 Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. krc 2010-08-10T02:58:18Z GO:0000975|GO:0001017|GO:0044212|GO:0000984 molecular_function owl:Class GO:0018152 biolink:NamedThing peptide cross-linking via 3'-(1'-L-histidyl)-L-tyrosine The modification of peptidyl-histidine and peptidyl-tyrosine to form a 3'-(1'-L-histidyl)-L-tyrosine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0270 biological_process owl:Class GO:0018151 biolink:NamedThing peptide cross-linking via L-histidyl-L-tyrosine The modification of peptidyl-histidine and peptidyl-tyrosine to form a protein cross-link. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043521 biolink:NamedThing regulation of myosin II filament disassembly Any process that modulates the frequency, rate or extent of the disassembly of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905625 biolink:NamedThing negative regulation of L-methionine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-methionine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-29T16:27:38Z biological_process owl:Class GO:1905624 biolink:NamedThing regulation of L-methionine import across plasma membrane Any process that modulates the frequency, rate or extent of L-methionine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-29T16:27:29Z biological_process owl:Class GO:0015101 biolink:NamedThing organic cation transmembrane transporter activity Enables the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-561054|Reactome:R-HSA-561072|Reactome:R-HSA-549279|Reactome:R-HSA-549129|Reactome:R-HSA-549304|Reactome:R-HSA-549322|Reactome:R-HSA-2161500 molecular_function owl:Class GO:0018467 biolink:NamedThing formaldehyde dehydrogenase activity Catalysis of the reaction: formaldehyde + H(2)O + NAD(+) = formate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl glutathione-independent formaldehyde dehydrogenase activity|formaldehyde:NAD+ oxidoreductase activity KEGG_REACTION:R00604|RHEA:16425|MetaCyc:FORMALDEHYDE-DEHYDROGENASE-RXN|EC:1.2.1.46|UM-BBD_reactionID:r0240 molecular_function owl:Class GO:0009658 biolink:NamedThing chloroplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. tmpzr1t_l9r_go_relaxed.owl chloroplast organization and biogenesis|chloroplast organisation biological_process owl:Class GO:0009657 biolink:NamedThing plastid organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid. tmpzr1t_l9r_go_relaxed.owl plastid organization and biogenesis|plastid organisation biological_process owl:Class GO:0002890 biolink:NamedThing negative regulation of immunoglobulin mediated immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of an immunoglobulin mediated immune response. tmpzr1t_l9r_go_relaxed.owl down-regulation of immunoglobulin mediated immune response|downregulation of immunoglobulin mediated immune response|down regulation of immunoglobulin mediated immune response|inhibition of immunoglobulin mediated immune response biological_process owl:Class GO:0002713 biolink:NamedThing negative regulation of B cell mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl negative regulation of B-lymphocyte mediated immunity|negative regulation of B lymphocyte mediated immunity|negative regulation of B-cell mediated immunity|inhibition of B cell mediated immunity|down-regulation of B cell mediated immunity|downregulation of B cell mediated immunity|down regulation of B cell mediated immunity biological_process owl:Class GO:0051948 biolink:NamedThing negative regulation of glutamate uptake involved in transmission of nerve impulse Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of L-glutamate into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of glutamate uptake during transmission of nerve impulse|downregulation of glutamate uptake during transmission of nerve impulse|negative regulation of glutamate uptake involved in conduction of nerve impulse|negative regulation of glutamate reuptake|negative regulation of glutamate uptake during transmission of nerve impulse|down regulation of glutamate uptake during transmission of nerve impulse|inhibition of glutamate uptake during transmission of nerve impulse biological_process owl:Class GO:0051946 biolink:NamedThing regulation of glutamate uptake involved in transmission of nerve impulse Any process that modulates the frequency, rate or extent of the directed movement of L-glutamate into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl regulation of L-glutamate reuptake|regulation of glutamate uptake involved in conduction of nerve impulse|regulation of L-glutamate uptake during transmission of nerve impulse|regulation of glutamate uptake during transmission of nerve impulse|regulation of glutamate reuptake biological_process owl:Class GO:0019536 biolink:NamedThing vibriobactin metabolic process The chemical reactions and pathways involving vibriobactin, the major siderophore produced by Vibrio cholerae. tmpzr1t_l9r_go_relaxed.owl vibriobactin metabolism biological_process owl:Class GO:0009237 biolink:NamedThing siderophore metabolic process The chemical reactions and pathways involving siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action. tmpzr1t_l9r_go_relaxed.owl siderochrome metabolism|siderophore metabolism|siderochrome metabolic process biological_process owl:Class GO:0045644 biolink:NamedThing negative regulation of eosinophil differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of eosinophil differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of eosinophil differentiation|inhibition of eosinophil differentiation|down regulation of eosinophil differentiation|down-regulation of eosinophil differentiation biological_process owl:Class GO:0099590 biolink:NamedThing neurotransmitter receptor internalization A receptor-mediated endocytosis process that results in the internalization of a neurotransmitter receptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031623 biolink:NamedThing receptor internalization A receptor-mediated endocytosis process that results in the movement of receptors from the plasma membrane to the inside of the cell. The process begins when cell surface receptors are monoubiquitinated following ligand-induced activation. Receptors are subsequently taken up into endocytic vesicles from where they are either targeted to the lysosome or vacuole for degradation or recycled back to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900380 biolink:NamedThing negative regulation of asperthecin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of asperthecin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of asperthecin biosynthetic process|downregulation of asperthecin synthesis|inhibition of asperthecin formation|down regulation of asperthecin synthesis|negative regulation of asperthecin biosynthesis|down regulation of asperthecin biosynthesis|inhibition of asperthecin synthesis|down-regulation of asperthecin synthesis|negative regulation of asperthecin formation|down regulation of asperthecin biosynthetic process|downregulation of asperthecin biosynthetic process|down-regulation of asperthecin biosynthesis|down regulation of asperthecin formation|down-regulation of asperthecin formation|negative regulation of asperthecin synthesis|inhibition of asperthecin biosynthesis|downregulation of asperthecin biosynthesis|downregulation of asperthecin formation|down-regulation of asperthecin biosynthetic process di 2012-04-17T01:58:37Z biological_process owl:Class GO:1900379 biolink:NamedThing regulation of asperthecin biosynthetic process Any process that modulates the frequency, rate or extent of asperthecin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of asperthecin formation|regulation of asperthecin synthesis|regulation of asperthecin biosynthesis di 2012-04-17T01:58:27Z biological_process owl:Class GO:0048649 biolink:NamedThing caste determination, influence by genetic factors The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to genetic cues. Individuals with distinct developmental fates perform different functions in a colony of social insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048652 biolink:NamedThing polyphenic determination, influence by genetic factors The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to genetic cues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050798 biolink:NamedThing activated T cell proliferation The expansion of a T cell population following activation by an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl proliferation of activated T cells|activated T-lymphocyte proliferation|activated T lymphocyte proliferation|activated T-cell proliferation Note that this term refers to the proliferation of previously activated T cells; it is to be used for gene products involved in T cell proliferation following an antigenic stimulus, including both proteins internal to the T cell and external factors, such as IL-2, which specifically promote proliferation of activated T cells. biological_process owl:Class GO:0042098 biolink:NamedThing T cell proliferation The expansion of a T cell population by cell division. Follows T cell activation. tmpzr1t_l9r_go_relaxed.owl T lymphocyte proliferation|T-cell proliferation|T-lymphocyte proliferation GO:0042111 biological_process owl:Class GO:0005388 biolink:NamedThing P-type calcium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(in) = ADP + phosphate + Ca2+(out). tmpzr1t_l9r_go_relaxed.owl calcium-transporting ATPase activity|sarco(endo)plasmic reticulum Ca2+-ATPase|Ca(2+)-transporting ATPase activity|ATP-dependent calcium transmembrane transporter activity|calcium pump|Ca2+-transporting ATPase activity|calcium transporting ATPase activity|calcium efflux ATPase|ATPase-coupled calcium transmembrane transporter activity|calcium-translocating P-type ATPase activity|calcium transmembrane transporter activity, phosphorylative mechanism EC:7.2.2.10|Reactome:R-HSA-418309|MetaCyc:3.6.3.8-RXN|Reactome:R-HSA-936883|Reactome:R-HSA-418365|Reactome:R-HSA-427910|RHEA:18105 molecular_function owl:Class GO:0019829 biolink:NamedThing ATPase-coupled cation transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent cation transmembrane transporter activity|plasma membrane cation-transporting ATPase|cation-transporting ATPase activity|cation ABC transporter Reactome:R-HSA-5251989|Reactome:R-HSA-5692480 molecular_function owl:Class GO:0072723 biolink:NamedThing cellular response to amitrole Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amitrole stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 3-amino-1,2,4-triazole mah 2012-05-31T10:51:52Z biological_process owl:Class GO:0072722 biolink:NamedThing response to amitrole Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amitrole stimulus. tmpzr1t_l9r_go_relaxed.owl response to 3-amino-1,2,4-triazole mah 2012-05-31T10:51:45Z biological_process owl:Class GO:2000872 biolink:NamedThing positive regulation of progesterone secretion Any process that activates or increases the frequency, rate or extent of progesterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:51:22Z biological_process owl:Class GO:2000196 biolink:NamedThing positive regulation of female gonad development Any process that activates or increases the frequency, rate or extent of female gonad development. tmpzr1t_l9r_go_relaxed.owl positive regulation of ovarian development|positive regulation of ovary development yaf 2010-10-19T10:45:41Z biological_process owl:Class GO:2000304 biolink:NamedThing positive regulation of ceramide biosynthetic process Any process that activates or increases the frequency, rate or extent of ceramide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of ceramide synthesis|positive regulation of ceramide formation|positive regulation of ceramide biosynthesis|positive regulation of ceramide anabolism dph 2011-01-04T02:37:32Z biological_process owl:Class GO:0006233 biolink:NamedThing dTDP biosynthetic process The chemical reactions and pathways resulting in the formation of dTDP, deoxyribosylthymine diphosphate (2'-deoxyribosylthymine5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dTDP anabolism|dTDP formation|dTDP synthesis|dTDP biosynthesis biological_process owl:Class GO:0009197 biolink:NamedThing pyrimidine deoxyribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine deoxyribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside diphosphate biosynthesis|pyrimidine deoxyribonucleoside diphosphate synthesis|pyrimidine deoxyribonucleoside diphosphate anabolism|pyrimidine deoxyribonucleoside diphosphate formation biological_process owl:Class GO:0018475 biolink:NamedThing trans-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity Catalysis of the reaction: trans-2-methyl-5-isopropylhexa-2,5-dienal + NAD+ + H2O = NADH + H+ + trans-2-methyl-5-isopropylhexa-2,5-dienoic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0745 molecular_function owl:Class GO:2000134 biolink:NamedThing negative regulation of G1/S transition of mitotic cell cycle Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-29T09:38:51Z biological_process owl:Class GO:1901991 biolink:NamedThing negative regulation of mitotic cell cycle phase transition Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl downregulation of mitotic cell cycle phase transition|down-regulation of mitotic cell cycle phase transition|inhibition of mitotic cell cycle phase transition|down regulation of mitotic cell cycle phase transition jl 2013-03-19T16:14:46Z biological_process owl:Class GO:0044506 biolink:NamedThing modulation of glucagon-like peptide receptor 1 activity in other organism The process in which an organism effects a change in the activity of a glucagon-like peptide receptor 1 in a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of glucagon-like peptide receptor activity in other organism jl 2012-02-23T04:29:14Z biological_process owl:Class GO:0044504 biolink:NamedThing modulation of receptor activity in other organism The process in which an organism effects a change in the activity of a receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T04:21:41Z biological_process owl:Class GO:1900190 biolink:NamedThing regulation of single-species biofilm formation Any process that modulates the frequency, rate or extent of single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl di 2012-03-19T12:42:04Z biological_process owl:Class GO:0002803 biolink:NamedThing positive regulation of antibacterial peptide production Any process that activates or increases the frequency, rate, or extent of antibacterial peptide production. tmpzr1t_l9r_go_relaxed.owl up regulation of antibacterial peptide production|upregulation of antibacterial peptide production|up-regulation of antibacterial peptide production|activation of antibacterial peptide production|stimulation of antibacterial peptide production biological_process owl:Class GO:1900426 biolink:NamedThing positive regulation of defense response to bacterium Any process that activates or increases the frequency, rate or extent of defense response to bacterium. tmpzr1t_l9r_go_relaxed.owl upregulation of defence response to bacterium|activation of defense response to bacterium|up regulation of defence response to bacteria|up-regulation of defense response to bacteria|positive regulation of defense response to bacteria|up-regulation of antibacterial peptide activity|activation of defense response to bacteria|activation of resistance response to pathogenic bacterium|upregulation of defense response to bacteria|activation of defence response to bacteria|up regulation of defense response to bacterium|up regulation of defence response to bacterium|positive regulation of defence response to bacterium|activation of antibacterial peptide activity|up-regulation of defense response to bacterium|upregulation of defence response to bacteria|activation of defence response to bacterium|positive regulation of defence response to bacteria|activation of resistance response to pathogenic bacteria|up-regulation of defence response to bacteria|up regulation of defense response to bacteria|upregulation of antibacterial peptide activity|up regulation of antibacterial peptide activity|up-regulation of defence response to bacterium|upregulation of defense response to bacterium|positive regulation of defense response to bacterium, incompatible interaction|positive regulation of antibacterial peptide activity dhl 2012-04-24T10:13:13Z GO:1902479 biological_process owl:Class GO:0004604 biolink:NamedThing phosphoadenylyl-sulfate reductase (thioredoxin) activity Catalysis of the reaction: adenosine 3',5'-diphosphate + H(+) + sulfite + thioredoxin disulfide = 3'-phospho-5'-adenylyl sulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylylsulfate reductase activity|thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase activity|PAdoPS reductase activity|PAPS reductase activity|PAPS reductase, thioredoxin-dependent activity|adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)|phosphoadenosine-phosphosulfate reductase activity|phosphoadenylyl-sulphate reductase (thioredoxin) activity|PAPS sulfotransferase activity|thioredoxin:3'-phospho-adenylylsulfate reductase activity|adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming) RHEA:11724|MetaCyc:1.8.4.8-RXN|EC:1.8.4.8|KEGG_REACTION:R02021 molecular_function owl:Class GO:0016671 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, disulphide as acceptor EC:1.8.4.- molecular_function owl:Class GO:0018425 biolink:NamedThing O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of O3-(N-acetylglucosamine-1-phosphoryl)-L-serine. The recovery of O-phosphorylserine from acid hydrolysates suggests N-acetylglucosamine-1-phosphate residues are esterified to peptidyl serines through phosphoester bonds. tmpzr1t_l9r_go_relaxed.owl O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthesis|O3-(N-acetylglucosamine-1-phosphoryl)-L-serine synthesis|O3-(N-acetylglucosamine-1-phosphoryl)-L-serine anabolism|O3-(N-acetylglucosamine-1-phosphoryl)-L-serine formation RESID:AA0296 biological_process owl:Class GO:0046349 biolink:NamedThing amino sugar biosynthetic process The chemical reactions and pathways resulting in the formation of any amino sugar, sugars containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl amino sugar anabolism|aminosaccharide biosynthesis|amino sugar formation|amino sugar synthesis|amino sugar biosynthesis|aminosaccharide biosynthetic process biological_process owl:Class GO:0016414 biolink:NamedThing O-octanoyltransferase activity Catalysis of the transfer of an octanoyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008374 biolink:NamedThing O-acyltransferase activity Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1482850|Reactome:R-HSA-5483229|Reactome:R-HSA-162683|Reactome:R-HSA-1482781|Reactome:R-HSA-1482861|Reactome:R-HSA-1482867|Reactome:R-HSA-422104|Reactome:R-HSA-5358343|Reactome:R-HSA-3238694|Reactome:R-HSA-422017|Reactome:R-HSA-1482775 molecular_function owl:Class GO:0009900 biolink:NamedThing dehiscence The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Dehiscence_(botany) biological_process owl:Class GO:0017083 biolink:NamedThing 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity Catalysis of the reaction: GDP-beta-L-fucose + beta-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R = GDP + 1,4-beta-D-galactosyl-(1,4)-[alpha-L-fucosyl-(1,3)]-N-acetyl-D-glucosaminyl-R. tmpzr1t_l9r_go_relaxed.owl plasma alpha-3-fucosyltransferase activity|guanosine diphosphofucose-glucoside alpha-1->3-fucosyltransferase activity|GDP-L-fucose:1,4-beta-D-galactosyl-N-acetyl-D-glucosaminyl-R 3-L-fucosyltransferase activity|guanosine diphosphofucose-glucoside alpha1->3-fucosyltransferase activity|GDP-beta-L-fucose:1,4-beta-D-galactosyl-N-acetyl-D-glucosaminyl-R 3-L-fucosyltransferase activity|Lewis-negative alpha-3-fucosyltransferase activity|galactoside 3-fucosyltransferase activity|GDP-beta-L-fucose:1,4-beta-D-galactosyl-N-acetyl-D-glucosaminyl-R 3-alpha-L-fucosyltransferase activity|galactoside 3-L-fucosyltransferase activity EC:2.4.1.152|RHEA:14257|MetaCyc:GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0046920 biolink:NamedThing alpha-(1->3)-fucosyltransferase activity Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha-(1->3) linkage. tmpzr1t_l9r_go_relaxed.owl alpha-(1,3)-fucosyltransferase activity|alpha-1,3-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity Reactome:R-HSA-9605609|Reactome:R-HSA-9605682|Reactome:R-HSA-9605644|Reactome:R-HSA-9603984 molecular_function owl:Class GO:0071264 biolink:NamedThing positive regulation of translational initiation in response to starvation Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl activation of translation initiation in response to starvation|positive regulation of translational initiation in response to nutrient starvation|upregulation of translation initiation in response to starvation|up regulation of translation initiation in response to starvation|up-regulation of translation initiation in response to starvation|stimulation of translation initiation in response to starvation mah 2009-12-08T05:35:45Z biological_process owl:Class GO:0042811 biolink:NamedThing pheromone biosynthetic process The chemical reactions and pathways resulting in the formation of pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process. tmpzr1t_l9r_go_relaxed.owl pheromone synthesis|pheromone formation|pheromone biosynthesis|pheromone anabolism biological_process owl:Class GO:0042810 biolink:NamedThing pheromone metabolic process The chemical reactions and pathways involving pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process. tmpzr1t_l9r_go_relaxed.owl pheromone metabolism biological_process owl:Class GO:0047980 biolink:NamedThing hippurate hydrolase activity Catalysis of the reaction: N-benzoylglycine + H(2)O = benzoate + glycine. tmpzr1t_l9r_go_relaxed.owl hippuricase activity|benzoylglycine amidohydrolase activity|N-benzoylamino-acid amidohydrolase activity RHEA:10424|MetaCyc:HIPPURATE-HYDROLASE-RXN|KEGG_REACTION:R01424|EC:3.5.1.32 molecular_function owl:Class GO:0061025 biolink:NamedThing membrane fusion The membrane organization process that joins two lipid bilayers to form a single membrane. tmpzr1t_l9r_go_relaxed.owl single-organism membrane fusion|cellular membrane fusion Wikipedia:Lipid_bilayer_fusion jl 2010-02-08T02:48:06Z GO:0006944|GO:0044801 biological_process owl:Class GO:0061024 biolink:NamedThing membrane organization A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular membrane organisation|cellular membrane organization|single-organism membrane organization|membrane organization and biogenesis|membrane organisation jl 2010-02-08T02:43:11Z GO:0016044|GO:0044802 biological_process owl:Class GO:0034903 biolink:NamedThing endosulfan ether monooxygenase activity Catalysis of the reaction: endosulfan ether + O2 + 2 H+ + 2 e- = endosulfan hydroxyether + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1413 molecular_function owl:Class GO:0090654 biolink:NamedThing basolateral recycling endosome Tubulo-vesicular structure located in the basolateral cytoplasm that participates in basolateral cargo recycling in polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-01T15:46:19Z cellular_component owl:Class GO:0055037 biolink:NamedThing recycling endosome An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl endosome recycling compartment|ERC|endosomal recycling compartment cellular_component owl:Class GO:1905803 biolink:NamedThing negative regulation of cellular response to manganese ion Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to manganese ion. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to manganese|downregulation of cellular response to manganese ion|down-regulation of cellular response to manganese ion|inhibition of cellular response to manganese ion|down regulation of cellular response to manganese|down regulation of cellular response to manganese ion|downregulation of cellular response to manganese|negative regulation of cellular response to manganese|inhibition of cellular response to manganese pga 2017-01-11T14:59:48Z biological_process owl:Class GO:1900245 biolink:NamedThing positive regulation of MDA-5 signaling pathway Any process that activates or increases the frequency, rate or extent of MDA-5 signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of melanoma differentiation-associated gene 5 signaling pathway|up regulation of melanoma differentiation-associated gene 5 signaling pathway|up-regulation of MDA-5 signaling pathway|up regulation of MDA-5 signaling pathway|positive regulation of MDA5 signaling pathway|activation of IFIH1 signaling pathway|up-regulation of MDA5 signaling pathway|positive regulation of melanoma differentiation-associated gene 5 signaling pathway|activation of MDA-5 signaling pathway|activation of melanoma differentiation-associated gene 5 signaling pathway|positive regulation of MDA-5 signalling pathway|upregulation of MDA-5 signaling pathway|positive regulation of IFIH1 signaling pathway|upregulation of melanoma differentiation-associated gene 5 signaling pathway|upregulation of MDA5 signaling pathway|up-regulation of IFIH1 signaling pathway|upregulation of IFIH1 signaling pathway|up regulation of MDA5 signaling pathway|up regulation of IFIH1 signaling pathway|activation of MDA5 signaling pathway ss 2012-04-02T10:55:38Z biological_process owl:Class GO:0002699 biolink:NamedThing positive regulation of immune effector process Any process that activates or increases the frequency, rate, or extent of an immune effector process. tmpzr1t_l9r_go_relaxed.owl up-regulation of immune effector process|stimulation of immune effector process|activation of immune effector process|up regulation of immune effector process|upregulation of immune effector process biological_process owl:Class GO:1904917 biolink:NamedThing L-arginine transmembrane transport from lysosomal lumen to cytosol The directed movement of L-arginine across a membrane from lysosomal lumen to cytosol. tmpzr1t_l9r_go_relaxed.owl transmembrane L-arginine transport from lysosomal lumen to cytosol kmv 2016-01-21T16:27:48Z biological_process owl:Class GO:2000007 biolink:NamedThing negative regulation of metanephric comma-shaped body morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of metanephric comma-shaped body morphogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-30T02:17:17Z biological_process owl:Class GO:0045595 biolink:NamedThing regulation of cell differentiation Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019449 biolink:NamedThing L-cysteine catabolic process to hypotaurine The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including hypotaurine. tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation to hypotaurine|L-cysteine breakdown to hypotaurine biological_process owl:Class GO:0019448 biolink:NamedThing L-cysteine catabolic process The chemical reactions and pathways resulting in the breakdown of L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation|L-cysteine catabolism|L-cysteine breakdown biological_process owl:Class GO:0006556 biolink:NamedThing S-adenosylmethionine biosynthetic process The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. tmpzr1t_l9r_go_relaxed.owl S-adenosyl methionine biosynthesis|S-adenosylmethionine formation|SAM biosynthetic process|S-adenosyl methionine biosynthetic process|S-adenosylmethionine synthesis|S-adenosylmethionine anabolism|S-adenosylmethionine biosynthesis MetaCyc:SAM-PWY biological_process owl:Class GO:0046500 biolink:NamedThing S-adenosylmethionine metabolic process The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. tmpzr1t_l9r_go_relaxed.owl S-adenosyl methionine metabolism|S-adenosylmethionine metabolism|SAM metabolic process|S-adenosyl methionine metabolic process biological_process owl:Class GO:0043934 biolink:NamedThing sporulation The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Spore biological_process owl:Class GO:0097374 biolink:NamedThing sensory neuron axon guidance The process in which the migration of an axon growth cone of a sensory neuron is directed to a specific target site in response to a combination of attractive and repulsive cues. A sensory neuron is an afferent neuron conveying sensory impulses. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-01T10:16:22Z biological_process owl:Class GO:0007411 biolink:NamedThing axon guidance The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl axon chemotaxis|axon growth cone guidance|axon pathfinding Wikipedia:Axon_guidance GO:0008040 biological_process owl:Class GO:0052805 biolink:NamedThing imidazole-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. tmpzr1t_l9r_go_relaxed.owl imidazole degradation|imidazole breakdown|imidazole catabolism biological_process owl:Class GO:0072667 biolink:NamedThing maintenance of protein location in vacuole Any process in which a protein is maintained in a specific location in a vacuole, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:56:57Z biological_process owl:Class GO:0070756 biolink:NamedThing positive regulation of interleukin-35 production Any process that activates or increases the frequency, rate, or extent of interleukin-35 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-35 production|up-regulation of interleukin-35 production|positive regulation of interleukin-35 biosynthetic process|upregulation of interleukin-35 production|up regulation of interleukin-35 production|activation of interleukin-35 production|stimulation of interleukin-35 production mah 2009-06-23T01:39:45Z GO:0070752 biological_process owl:Class GO:0099100 biolink:NamedThing G-protein gated cation channel activity A cation channel activity that is gated by binding of a G-protein beta-gamma dimer. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000900 biolink:NamedThing cyclodextrin metabolic process The chemical reactions and pathways involving a cyclodextrin. tmpzr1t_l9r_go_relaxed.owl cyclodextrin metabolism jl 2011-07-28T03:19:11Z biological_process owl:Class GO:0044042 biolink:NamedThing glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. tmpzr1t_l9r_go_relaxed.owl glucan metabolism biological_process owl:Class GO:0072532 biolink:NamedThing tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity Catalysis of the meta-hydroxylation of any of the three phenolic rings on triferuloyl spermidine or any of its mono- or di-(hydroxyferuloyl)-spermidine derivatives. tmpzr1t_l9r_go_relaxed.owl Note that the overall reaction representing three successive executions of this activity is N1,N5,N10-triferuloyl spermidine + 3 NADPH + 3 O2 = N1,N5,N10-tri-(hydroxyferuloyl)-spermidine + 3 NADP+ + 3 H2O; this corresponds to the MetaCyc reaction RXN-11262 (http://biocyc.org/META/NEW-IMAGE?type=REACTION&object=RXN-11262) and the KEGG reaction R08986 (http://www.genome.jp/dbget-bin/www_bget?rn:R08986). mah 2011-01-12T01:54:31Z molecular_function owl:Class GO:0002597 biolink:NamedThing positive regulation of antigen processing and presentation of peptide antigen via MHC class Ib Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl up-regulation of antigen processing and presentation of peptide antigen via MHC class Ib|up regulation of antigen processing and presentation of peptide antigen via MHC class Ib|activation of antigen processing and presentation of peptide antigen via MHC class Ib|stimulation of antigen processing and presentation of peptide antigen via MHC class Ib|upregulation of antigen processing and presentation of peptide antigen via MHC class Ib|positive regulation of peptide antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0002594 biolink:NamedThing positive regulation of antigen processing and presentation via MHC class Ib Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl up regulation of antigen processing and presentation via MHC class Ib|upregulation of antigen processing and presentation via MHC class Ib|stimulation of antigen processing and presentation via MHC class Ib|activation of antigen processing and presentation via MHC class Ib|up-regulation of antigen processing and presentation via MHC class Ib biological_process owl:Class GO:1903948 biolink:NamedThing negative regulation of atrial cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of atrial cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl downregulation of atrial cardiac muscle cell action potential|down-regulation of atrial cardiac muscle cell action potential|inhibition of atrial cardiac muscle cell action potential|down regulation of atrial cardiac muscle cell action potential nc 2015-02-20T14:36:33Z biological_process owl:Class GO:0045759 biolink:NamedThing negative regulation of action potential Any process that stops, prevents, or reduces the frequency, rate or extent of action potential creation, propagation or termination. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl downregulation of action potential|inhibition of action potential|down-regulation of action potential|down regulation of action potential biological_process owl:Class GO:0086089 biolink:NamedThing voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an atrial cardiomyocyte contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization dph 2011-11-22T01:33:01Z molecular_function owl:Class GO:0086008 biolink:NamedThing voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a cardiac muscle cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:38:09Z molecular_function owl:Class GO:2000608 biolink:NamedThing positive regulation of cell proliferation involved in mesonephros development Any process that activates or increases the frequency, rate or extent of cell proliferation involved in mesonephros development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T08:42:25Z biological_process owl:Class GO:2000606 biolink:NamedThing regulation of cell proliferation involved in mesonephros development Any process that modulates the frequency, rate or extent of cell proliferation involved in mesonephros development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T08:42:19Z biological_process owl:Class GO:0006002 biolink:NamedThing fructose 6-phosphate metabolic process The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism. tmpzr1t_l9r_go_relaxed.owl fructose 6-phosphate metabolism biological_process owl:Class GO:0016998 biolink:NamedThing cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall breakdown|cellular cell wall macromolecule degradation|cell wall degradation|cell wall catabolism|cellular cell wall macromolecule catabolism|cellular cell wall macromolecule breakdown|cellular cell wall macromolecule catabolic process GO:0044039 biological_process owl:Class GO:0071190 biolink:NamedThing protocadherin-alpha-v7-protocadherin-gamma-b2 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdha7-Pcdhgb4 complex mah 2009-11-23T04:30:12Z cellular_component owl:Class GO:0071183 biolink:NamedThing protocadherin-alpha-protocadherin-gamma complex A protein complex that contains two cell adhesion molecules, a protocadherin-alpha and a protocadherin-gamma, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-23T04:10:30Z cellular_component owl:Class GO:0098861 biolink:NamedThing actin filament bundle of filopodium A parallel bundle of actin filaments that is part of filopodium. Filaments are oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098859 biolink:NamedThing actin filament bundle of actin-based cell projection A bundle of cross-linked actin filaments that is part of an actin-based cell protrusion, in which filaments are oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which stabilizes the filaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033352 biolink:NamedThing UDP-D-apiose biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-D-apiose, uridinediphosphoapicose, a substance composed of apiose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-apiose biosynthesis|UDP-D-apiose formation|UDP-D-apiose anabolism|UDP-D-apiose synthesis MetaCyc:PWY-4821|MetaCyc:PWY-5113 biological_process owl:Class GO:0009226 biolink:NamedThing nucleotide-sugar biosynthetic process The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl nucleotide-sugar biosynthesis|nucleotide-sugar anabolism|nucleotide-sugar formation|nucleotide-sugar synthesis biological_process owl:Class GO:0035965 biolink:NamedThing cardiolipin acyl-chain remodeling Remodeling the acyl chains of premature (de novo synthesized) cardiolipin (1,3-bis(3-phosphatidyl)glycerol), through sequential deacylation and re-acylation reactions, to generate mature cardiolipin containing high-levels of unsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl cardiolipin maturation|diphosphatidylglycerol remodeling|cardiolipin acyl-chain remodelling bf 2011-08-03T11:17:49Z biological_process owl:Class GO:0032048 biolink:NamedThing cardiolipin metabolic process The chemical reactions and pathways involving cardiolipin, 1,3-bis(3-phosphatidyl)glycerol. tmpzr1t_l9r_go_relaxed.owl diphosphatidylglycerol metabolic process|diphosphatidylglycerol metabolism|cardiolipin metabolism biological_process owl:Class GO:0018301 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-cysteine persulfido-bis-L-glutamato-L-histidino tetrairon The incorporation of iron into an iron-sulfur cluster by tris-L-cysteinyl-L-cysteine persulfido-bis-L-glutamato-L-histidino tetrairon. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-cysteine persulphido-bis-L-glutamato-L-histidino tetrairon RESID:AA0268 biological_process owl:Class GO:0097244 biolink:NamedThing flavonol binding Binding to a flavonol, a flavonoid that contains a 3-hydroxy-2-phenylchromen-4-one backbone. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-17T03:50:45Z molecular_function owl:Class GO:0097243 biolink:NamedThing flavonoid binding Binding to a flavonoid, a compound containing two or more aromatic rings, each bearing at least one aromatic hydroxyl and connected with a carbon bridge. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-17T03:49:16Z molecular_function owl:Class GO:0045586 biolink:NamedThing regulation of gamma-delta T cell differentiation Any process that modulates the frequency, rate or extent of gamma-delta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of gamma-delta T cell development|regulation of gamma-delta T-lymphocyte differentiation|regulation of gamma-delta T-cell differentiation|regulation of gamma-delta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045580 biolink:NamedThing regulation of T cell differentiation Any process that modulates the frequency, rate or extent of T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte differentiation|regulation of T cell development|regulation of T-cell differentiation|regulation of T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0033658 biolink:NamedThing modification by symbiont of host chloroplast thylakoid The process in which an organism effects a change in the structure or function of the host cell chloroplast thylakoid. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033657 biolink:NamedThing modification by symbiont of host chloroplast part The process in which an organism effects a change in the structure or function of a component of the host cell chloroplast. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900668 biolink:NamedThing negative regulation of endocrocin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of endocrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of endocrocin formation|negative regulation of endocrocin anabolism|downregulation of endocrocin biosynthetic process|down-regulation of endocrocin synthesis|down-regulation of endocrocin biosynthetic process|downregulation of endocrocin biosynthesis|inhibition of endocrocin formation|down regulation of endocrocin formation|downregulation of endocrocin anabolism|inhibition of endocrocin anabolism|negative regulation of endocrocin synthesis|downregulation of endocrocin synthesis|down-regulation of endocrocin formation|down-regulation of endocrocin anabolism|negative regulation of endocrocin formation|down-regulation of endocrocin biosynthesis|inhibition of endocrocin biosynthesis|negative regulation of endocrocin biosynthesis|down regulation of endocrocin biosynthetic process|down regulation of endocrocin synthesis|inhibition of endocrocin synthesis|inhibition of endocrocin biosynthetic process|down regulation of endocrocin anabolism|down regulation of endocrocin biosynthesis di 2012-05-22T04:16:25Z biological_process owl:Class GO:0032722 biolink:NamedThing positive regulation of chemokine production Any process that activates or increases the frequency, rate, or extent of chemokine production. tmpzr1t_l9r_go_relaxed.owl upregulation of chemokine production|positive regulation of chemokine secretion|activation of chemokine production|up-regulation of chemokine production|positive regulation of chemokine biosynthetic process|stimulation of chemokine production|up regulation of chemokine production tb 2009-12-18T11:28:00Z GO:0090197|GO:0045080 biological_process owl:Class GO:1903256 biolink:NamedThing selenoneine metabolic process The chemical reactions and pathways involving selenoneine. tmpzr1t_l9r_go_relaxed.owl L-selenoneine metabolic process|selenoneine metabolism mah 2014-08-06T09:14:24Z biological_process owl:Class GO:0006577 biolink:NamedThing amino-acid betaine metabolic process The chemical reactions and pathways involving any betaine, the N-trimethyl derivative of an amino acid. tmpzr1t_l9r_go_relaxed.owl betaine metabolism|betaine metabolic process biological_process owl:Class GO:0001813 biolink:NamedThing regulation of antibody-dependent cellular cytotoxicity Any process that modulates the frequency, rate, or extent of antibody-dependent cellular cytotoxicity. tmpzr1t_l9r_go_relaxed.owl regulation of antibody dependent cell death|regulation of antibody-dependent cell killing|regulation of antibody dependent cell killing|regulation of antibody-dependent cell death biological_process owl:Class GO:0001910 biolink:NamedThing regulation of leukocyte mediated cytotoxicity Any process that modulates the frequency, rate, or extent of leukocyte mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl regulation of leucocyte mediated cytotoxicity|regulation of immune cell mediated cell death|regulation of immune cell mediated cell killing|regulation of immune cell mediated cytotoxicity biological_process owl:Class GO:0046405 biolink:NamedThing glycerol dehydratase activity Catalysis of the reaction: glycerol = 3-hydroxypropanal + H2O. tmpzr1t_l9r_go_relaxed.owl glycerol dehydrase activity|glycerol hydro-lyase (3-hydroxypropanal-forming)|glycerol hydro-lyase activity MetaCyc:GLYCEROL-DEHYDRATASE-RXN|RHEA:19765|EC:4.2.1.30 molecular_function owl:Class GO:0110014 biolink:NamedThing negative regulation of aggregation involved in sorocarp development Any process that decreases the frequency, rate or extent of aggregation involved in sorocarp development. Aggregation involved in sorocarp development is the process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug. tmpzr1t_l9r_go_relaxed.owl kmv 2017-05-10T12:53:12Z biological_process owl:Class GO:1902814 biolink:NamedThing positive regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that activates or increases the frequency, rate or extent of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl activation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|up-regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|up regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|up regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|up-regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|upregulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|activation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|up-regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|upregulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|activation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|up regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|positive regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|positive regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|upregulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry mr 2014-03-26T21:18:56Z biological_process owl:Class GO:0035944 biolink:NamedThing perforin production The appearance of a perforin protein due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2011-07-27T11:44:21Z biological_process owl:Class GO:0002440 biolink:NamedThing production of molecular mediator of immune response The synthesis or release of any molecular mediator of the immune response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl production of cellular mediator of immune response Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0020009 biolink:NamedThing microneme A small, elongated secretory organelle that forms part of the apical complex, located along the main axis of an apicomplexan parasite cell within the extreme apical region and at the periphery under the inner membrane complex. Of the specialized secretory compartments identified in apicomplexans, micronemes discharge their contents first, during initial contact of the parasite's apical pole with the host cell surface. Micronemal proteins function during parasite attachment and penetration into the target cell. tmpzr1t_l9r_go_relaxed.owl sarconeme Wikipedia:Microneme cellular_component owl:Class GO:0043231 biolink:NamedThing intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl intracellular membrane-enclosed organelle cellular_component owl:Class GO:0035833 biolink:NamedThing berbamunine biosynthetic process The chemical reactions and pathways resulting in the formation of berbamunine, an isoquinoline alkaloid. tmpzr1t_l9r_go_relaxed.owl berbamunine formation|berbamunine anabolism|berbamunine synthesis|berbamunine biosynthesis bf 2011-05-04T03:12:03Z biological_process owl:Class GO:0035832 biolink:NamedThing berbamunine metabolic process The chemical reactions and pathways involving berbamunine, an isoquinoline alkaloid. tmpzr1t_l9r_go_relaxed.owl berbamunine metabolism bf 2011-05-04T03:11:18Z biological_process owl:Class GO:0120093 biolink:NamedThing regulation of peptidyl-lysine crotonylation Any process that modulates the frequency, rate or extent of crotonylation of a lysine residue in a protein. tmpzr1t_l9r_go_relaxed.owl krc 2017-08-22T20:25:51Z biological_process owl:Class GO:1901578 biolink:NamedThing negative regulation of alkane biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of alkane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of alkane biosynthetic process|downregulation of alkane biosynthetic process|inhibition of alkane biosynthesis|down-regulation of alkane formation|downregulation of alkane synthesis|downregulation of alkane anabolism|negative regulation of alkane anabolism|downregulation of alkane biosynthesis|down regulation of alkane biosynthesis|inhibition of alkane formation|negative regulation of alkane biosynthesis|down-regulation of alkane synthesis|inhibition of alkane anabolism|down-regulation of alkane biosynthesis|down-regulation of alkane anabolism|down regulation of alkane formation|inhibition of alkane synthesis|negative regulation of alkane synthesis|down-regulation of alkane biosynthetic process|down regulation of alkane synthesis|inhibition of alkane biosynthetic process|down regulation of alkane anabolism|downregulation of alkane formation|negative regulation of alkane formation dhl 2012-11-05T21:54:11Z biological_process owl:Class GO:1901577 biolink:NamedThing regulation of alkane biosynthetic process Any process that modulates the frequency, rate or extent of alkane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of alkane anabolism|regulation of alkane biosynthesis|regulation of alkane formation|regulation of alkane synthesis dhl 2012-11-05T21:54:06Z biological_process owl:Class GO:0098688 biolink:NamedThing parallel fiber to Purkinje cell synapse An excitatory synapse formed by the parallel fibers of granule cells synapsing onto the dendrites of Purkinje cells. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-21T18:32:05Z cellular_component owl:Class GO:0060076 biolink:NamedThing excitatory synapse A synapse in which an action potential in the presynaptic cell increases the probability of an action potential occurring in the postsynaptic cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Excitatory_synapse cellular_component owl:Class GO:0006562 biolink:NamedThing proline catabolic process The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl proline breakdown|proline degradation|proline catabolism biological_process owl:Class GO:0009065 biolink:NamedThing glutamine family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. tmpzr1t_l9r_go_relaxed.owl glutamine family amino acid catabolism|glutamine family amino acid breakdown|glutamine family amino acid degradation biological_process owl:Class GO:0060685 biolink:NamedThing regulation of prostatic bud formation Any process that modulates the rate, frequency, or extent of prostatic bud formation, the morphogenetic process in which a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-05T12:29:26Z biological_process owl:Class GO:0102652 biolink:NamedThing gibberellin A9,2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A9 + 2-oxoglutarate + O2 <=> gibberellin A51 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-171 molecular_function owl:Class GO:0048790 biolink:NamedThing maintenance of presynaptic active zone structure A process which maintains the organization and the arrangement of proteins at the active zone to ensure the fusion and docking of vesicles and the release of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl maintenance of pre-synaptic active zone structure biological_process owl:Class GO:0099558 biolink:NamedThing maintenance of synapse structure A process that preserves the structural organistation and orientation of a synaptic cellular component such as the synaptic cytoskeleton and molecular scaffolds. tmpzr1t_l9r_go_relaxed.owl synaptic maintenance biological_process owl:Class GO:0022843 biolink:NamedThing voltage-gated cation channel activity Enables the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2534378|Reactome:R-HSA-6788999 molecular_function owl:Class GO:0005244 biolink:NamedThing voltage-gated ion channel activity Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage gated ion channel activity|voltage-dependent ion channel activity molecular_function owl:Class GO:1904757 biolink:NamedThing positive regulation of gut granule assembly Any process that activates or increases the frequency, rate or extent of gut granule assembly. tmpzr1t_l9r_go_relaxed.owl activation of gut granule biogenesis|positive regulation of gut granule biogenesis|upregulation of gut granule biogenesis|upregulation of gut granule assembly|activation of gut granule assembly|up regulation of gut granule assembly|up regulation of gut granule formation|up regulation of gut granule biogenesis|up-regulation of gut granule biogenesis|upregulation of gut granule formation|up-regulation of gut granule assembly|activation of gut granule formation|up-regulation of gut granule formation|positive regulation of gut granule formation ah 2015-10-21T08:43:57Z biological_process owl:Class GO:1904755 biolink:NamedThing regulation of gut granule assembly Any process that modulates the frequency, rate or extent of gut granule assembly. tmpzr1t_l9r_go_relaxed.owl regulation of gut granule biogenesis|regulation of gut granule formation ah 2015-10-21T08:43:44Z biological_process owl:Class GO:0106016 biolink:NamedThing positive regulation of inflammatory response to wounding Any process that activates or increases the frequency, rate or extent of the inflammatory response to wounding. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-28T20:16:31Z biological_process owl:Class GO:1903036 biolink:NamedThing positive regulation of response to wounding Any process that activates or increases the frequency, rate or extent of response to wounding. tmpzr1t_l9r_go_relaxed.owl up-regulation of physiological response to wounding|up regulation of physiological response to wounding|upregulation of response to wounding|positive regulation of physiological response to wounding|up regulation of response to wounding|up-regulation of response to wounding|activation of response to wounding|activation of physiological response to wounding|upregulation of physiological response to wounding kmv 2014-05-18T01:28:58Z biological_process owl:Class GO:0019179 biolink:NamedThing dTDP-4-amino-4,6-dideoxy-D-glucose transaminase activity Catalysis of the reaction: dTDP-4-amino-4,6-dideoxy-D-glucose + 2-oxoglutarate = dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate. tmpzr1t_l9r_go_relaxed.owl dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase activity|TDP-4-oxo-6-deoxy-D-glucose transaminase activity|thymidine diphospho-4-keto-6-deoxy-D-glucose-glutamic transaminase activity|dTDP-4-amino-4,6-dideoxy-D-glucose:2-oxoglutarate aminotransferase activity|thymidine diphospho-4-amino-6-deoxyglucose aminotransferase activity|TDP-4-keto-6-deoxy-D-glucose transaminase activity|thymidine diphospho-4-keto-6-deoxy-D-glucose transaminase activity|thymidine diphospho-4-amino-4,6-dideoxyglucose aminotransferase activity MetaCyc:2.6.1.33-RXN|EC:2.6.1.33|RHEA:19085 molecular_function owl:Class GO:0036349 biolink:NamedThing galactose-specific flocculation The non-sexual aggregation of single-celled organisms mediated by the binding of cell wall proteins on one cell to galactose residues on the other. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion involved in galactose-specific flocculation bf 2012-09-19T10:56:16Z GO:0098611 biological_process owl:Class GO:0000128 biolink:NamedThing flocculation The reversible, non-sexual aggregation of single-celled organisms in suspension to form aggregates of many cells known as flocs. tmpzr1t_l9r_go_relaxed.owl flocculation via cell wall protein-carbohydrate interaction|coflocculation via lectin-mannose interaction|coflocculation|cell-cell adhesion involved in flocculation via cell wall protein-carbohydrate interaction|co-flocculation|flocculation via extracellular polymer|coflocculation via protein-carbohydrate interaction|cell-cell adhesion involved in flocculation https://github.com/geneontology/go-ontology/issues/18785|https://github.com/geneontology/go-ontology/issues/20192 Wikipedia:Flocculation The word floc derives from the Latin word floccus, which means a tuft of wool. bf 2012-07-11T01:30:40Z GO:0036282|GO:0000501|GO:0043690|GO:0036281|GO:0043689|GO:0032128 biological_process owl:Class GO:0051587 biolink:NamedThing inhibition of dopamine uptake involved in synaptic transmission Any process that prevents the activation of the directed movement of dopamine into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of dopamine import involved in synaptic transmission biological_process owl:Class GO:0051609 biolink:NamedThing inhibition of neurotransmitter uptake Any process that prevents the activation of the directed movement of a neurotransmitter into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of neurotransmitter import biological_process owl:Class GO:0009392 biolink:NamedThing N-acetyl-anhydromuramoyl-L-alanine amidase activity Catalysis of the reaction: GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-DAP-D-Ala + H2O glcNAc-1,6-anhMurNAc + L-Ala-gamma-D-Glu-DAP-D-Ala. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5225 molecular_function owl:Class GO:0016810 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds Reactome:R-HSA-6803753|EC:3.5.-.- molecular_function owl:Class GO:1905819 biolink:NamedThing negative regulation of chromosome separation Any process that stops, prevents or reduces the frequency, rate or extent of chromosome separation. tmpzr1t_l9r_go_relaxed.owl inhibition of chromosome separation|down regulation of chromosome separation|downregulation of rDNA separation|downregulation of chromosome separation|down-regulation of chromatid release|inhibition of chromatid release|downregulation of chromatid release|negative regulation of chromatid release|inhibition of rDNA separation|down regulation of rDNA separation|down-regulation of chromosome separation|negative regulation of rDNA separation|down regulation of chromatid release|down-regulation of rDNA separation bhm 2017-01-13T13:55:27Z biological_process owl:Class GO:0038098 biolink:NamedThing sequestering of BMP from receptor via BMP binding Binding to a bone morphogenetic protein (BMP) in the extracellular region, and inhibiting BMP signaling by preventing BMP from binding to its cell surface receptor. tmpzr1t_l9r_go_relaxed.owl extracellular sequestering of BMP|extracellular sequestering of bone morphogenetic protein bf 2012-02-22T11:28:54Z biological_process owl:Class GO:0035581 biolink:NamedThing sequestering of extracellular ligand from receptor The process of binding or confining an extracellular signaling ligand, such that the ligand is unable to bind to its cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein bioavailability|extracellular sequestering of receptor ligand Preventing a ligand from binding to its cell surface receptor be achieved by binding to the ligand directly, or by binding to members of a ligand-containing complex. bf 2010-10-12T03:12:11Z biological_process owl:Class GO:0090123 biolink:NamedThing lysosomal glycocalyx The polysaccharide-based coating on the inner side of a lysosomal membrane. It may be involved in protecting the membrane from digestion by lysosomal enzymes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19782 tb 2009-12-07T01:16:20Z cellular_component owl:Class GO:0030112 biolink:NamedThing glycocalyx A carbohydrate rich layer at the outermost periphery of a cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Glycocalyx cellular_component owl:Class GO:1904221 biolink:NamedThing negative regulation of serine C-palmitoyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of serine C-palmitoyltransferase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of SPT|negative regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|negative regulation of SPT|inhibition of SPT|downregulation of SPT|downregulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|inhibition of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|down-regulation of 3-oxosphinganine synthetase activity|down regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|down-regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|down-regulation of SPT|down regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|downregulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|down-regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|negative regulation of 3-oxosphinganine synthetase activity|inhibition of 3-oxosphinganine synthetase activity|downregulation of 3-oxosphinganine synthetase activity|inhibition of serine C-palmitoyltransferase activity|down-regulation of serine C-palmitoyltransferase activity|down regulation of serine C-palmitoyltransferase activity|downregulation of serine C-palmitoyltransferase activity|down regulation of 3-oxosphinganine synthetase activity|inhibition of acyl-CoA:serine C-2 acyltransferase decarboxylating|negative regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of the substrate availability rl 2015-05-15T08:27:39Z biological_process owl:Class GO:1904220 biolink:NamedThing regulation of serine C-palmitoyltransferase activity Any process that modulates the frequency, rate or extent of serine C-palmitoyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of SPT|regulation of 3-oxosphinganine synthetase activity|regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|regulation of serine palmitoyltransferase Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of the substrate availability rl 2015-05-15T08:27:33Z biological_process owl:Class GO:0010873 biolink:NamedThing positive regulation of cholesterol esterification Any process that increases the frequency, rate or extent of cholesterol esterification. Cholesterol esterification is the lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and cholesterol. In the blood this process is associated with the conversion of free cholesterol into cholesteryl ester, which is then sequestered into the core of a lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045940 biolink:NamedThing positive regulation of steroid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving steroids. tmpzr1t_l9r_go_relaxed.owl stimulation of steroid metabolic process|up-regulation of steroid metabolic process|upregulation of steroid metabolic process|positive regulation of steroid metabolism|activation of steroid metabolic process|up regulation of steroid metabolic process biological_process owl:Class GO:0044683 biolink:NamedThing methylthiol:coenzyme M methyltransferase activity Catalysis of the overall reaction: methyl-Co(III) methylated-thiol-specific corrinoid protein + coenzyme M = Co(I) methylated--thiol-specific corrinoid protein + methyl-CoM. tmpzr1t_l9r_go_relaxed.owl methylthiol:coenzyme M methyl transferase activity EC:2.1.1.251|MetaCyc:RXN-8125|RHEA:32667 This reaction is achieved by the catalysis of two successive steps carried out by the same enzyme - the transfer of a methyl group from the substrate to the cobalt cofactor of a methylated-thiol-specific corrinoid protein (MtsB), and the subsequent transfer of the methyl group from the corrinoid protein to coenzyme M. With most other methanogenesis substrates this process is carried out by two different enzymes (for example, EC:2.1.1.90, methanol-corrinoid protein Co-methyltransferase, and EC:2.1.1.246, methylated methanol-specific corrinoid protein:coenzyme M methyltransferase). The cobalt is oxidized during methylation from the Co(I) state to the Co(III) state, and is reduced back to the Co(I) form during demethylation. jl 2012-08-15T11:41:24Z molecular_function owl:Class GO:0072489 biolink:NamedThing methylammonium transmembrane transport The process in which methylammonium is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl methylammonium membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-12-10T10:36:33Z biological_process owl:Class GO:0015843 biolink:NamedThing methylammonium transport The directed movement of methylammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002725 biolink:NamedThing negative regulation of T cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell cytokine production. tmpzr1t_l9r_go_relaxed.owl negative regulation of T lymphocyte cytokine production|downregulation of T cell cytokine production|down-regulation of T cell cytokine production|down regulation of T cell cytokine production|inhibition of T cell cytokine production|negative regulation of T-lymphocyte cytokine production|negative regulation of T-cell cytokine production biological_process owl:Class GO:1990587 biolink:NamedThing FtsQBL complex A protein complex required for prokaryotic cell division (FtsZ-dependent cytokinesis). Part of the divisome. Assembled independently of the other divisome components in the cytoplasm prior to transport to the cell septum. In E. coli consists of FtsB, FtsL and FtsQ. tmpzr1t_l9r_go_relaxed.owl FtsB-FtsL-FtsQ complex An example of this is FtsB in E. coli (P0A6S5) in PMID:15165235 (inferred from physical interaction). bhm 2014-12-15T09:25:09Z cellular_component owl:Class GO:1990586 biolink:NamedThing divisome complex A protein complex required for prokaryotic cell division (FtsZ-dependent cytokinesis). These complexes are assembled and recruited to the cell septum in a strictly controlled sequence and co-ordinate invagination of the cell membrane, inward growth of the peptidoglycan layer, constriction of the outer membrane and separation of daughter cells. tmpzr1t_l9r_go_relaxed.owl bhm 2014-12-15T09:13:38Z cellular_component owl:Class GO:0016815 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a nitrile, a compound containing the cyano radical, -CN. tmpzr1t_l9r_go_relaxed.owl EC:3.5.5.- molecular_function owl:Class GO:0032899 biolink:NamedThing regulation of neurotrophin production Any process that modulates the frequency, rate, or extent of production of a neurotrophin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106398 biolink:NamedThing negative regulation of R7 cell fate commitment Any process that stops, prevents or reduces the frequency, rate or extent of R7 cell fate commitment. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T19:14:54Z biological_process owl:Class GO:0106396 biolink:NamedThing regulation of R7 cell fate commitment Any process that modulates the frequency, rate or extent of R7 cell fate commitment. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T19:14:13Z biological_process owl:Class GO:1903635 biolink:NamedThing positive regulation of leucine-tRNA ligase activity Any process that activates or increases the frequency, rate or extent of leucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of leucyl-transfer ribonucleic acid synthetase activity|upregulation of leucine-tRNA synthetase activity|upregulation of L-leucine:tRNALeu ligase (AMP-forming)|up-regulation of leucyl-transfer RNA synthetase activity|activation of L-leucine:tRNALeu ligase (AMP-forming)|positive regulation of leucyl-transfer ribonucleate synthetase activity|positive regulation of leucyl-transfer RNA synthetase activity|activation of leucine-tRNA ligase activity|up-regulation of leucine-tRNA synthetase activity|positive regulation of leucine translase activity|activation of leucyl-transfer ribonucleate synthetase activity|positive regulation of leucyl-transfer ribonucleic acid synthetase activity|positive regulation of leucine-tRNA synthetase activity|upregulation of leucyl-transfer ribonucleate synthetase activity|positive regulation of L-leucine:tRNALeu ligase (AMP-forming)|activation of leucine translase activity|up-regulation of leucine-tRNA ligase activity|activation of leucine-tRNA synthetase activity|up-regulation of L-leucine:tRNALeu ligase (AMP-forming)|up regulation of leucyl-transfer ribonucleate synthetase activity|activation of leucyl-tRNA synthetase activity|upregulation of leucyl-transfer RNA synthetase activity|up regulation of leucine translase activity|up-regulation of leucyl-tRNA synthetase activity|upregulation of leucyl-transfer ribonucleic acid synthetase activity|up regulation of leucyl-transfer ribonucleic acid synthetase activity|up-regulation of leucine translase activity|upregulation of leucyl-tRNA synthetase activity|up regulation of leucine-tRNA ligase activity|upregulation of leucine-tRNA ligase activity|up-regulation of leucyl-transfer ribonucleate synthetase activity|up regulation of leucyl-transfer RNA synthetase activity|activation of leucyl-transfer RNA synthetase activity|up regulation of L-leucine:tRNALeu ligase (AMP-forming)|upregulation of leucine translase activity|up regulation of leucyl-tRNA synthetase activity|activation of leucyl-transfer ribonucleic acid synthetase activity|up regulation of leucine-tRNA synthetase activity|positive regulation of leucyl-tRNA synthetase activity sl 2014-11-20T00:25:08Z biological_process owl:Class GO:0150072 biolink:NamedThing positive regulation of arginase activity Any process that activates or increases the frequency, rate or extent of arginase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T09:26:20Z biological_process owl:Class GO:0005771 biolink:NamedThing multivesicular body A type of endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm. tmpzr1t_l9r_go_relaxed.owl MVE|multivesicular endosome|MVB NIF_Subcellular:sao2045955158 cellular_component owl:Class GO:0005770 biolink:NamedThing late endosome A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl PVC|prevacuolar compartment NIF_Subcellular:nlx_subcell_20090702 cellular_component owl:Class GO:0046672 biolink:NamedThing positive regulation of compound eye retinal cell programmed cell death Any process that activates or increases the frequency, rate or extent of programmed cell death that occurs in the compound eye retina. tmpzr1t_l9r_go_relaxed.owl activation of retinal cell programmed cell death|up-regulation of retinal cell programmed cell death|positive regulation of retinal cell programmed cell death|up regulation of retinal cell programmed cell death|stimulation of retinal cell programmed cell death|upregulation of retinal cell programmed cell death biological_process owl:Class GO:0046670 biolink:NamedThing positive regulation of retinal cell programmed cell death Any process that activates or increases the frequency, rate or extent of programmed cell death that occurs in the retina. tmpzr1t_l9r_go_relaxed.owl upregulation of retinal programmed cell death|positive regulation of retinal programmed cell death|up regulation of retinal programmed cell death|up-regulation of retinal programmed cell death|activation of retinal programmed cell death|stimulation of retinal programmed cell death biological_process owl:Class GO:0046823 biolink:NamedThing negative regulation of nucleocytoplasmic transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances between the cytoplasm and the nucleus. tmpzr1t_l9r_go_relaxed.owl down-regulation of nucleocytoplasmic transport|downregulation of nucleocytoplasmic transport|inhibition of nucleocytoplasmic transport|down regulation of nucleocytoplasmic transport biological_process owl:Class GO:0032387 biolink:NamedThing negative regulation of intracellular transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances within cells. tmpzr1t_l9r_go_relaxed.owl down-regulation of intracellular transport|down regulation of intracellular transport|downregulation of intracellular transport|inhibition of intracellular transport biological_process owl:Class GO:1903432 biolink:NamedThing regulation of TORC1 signaling Any process that modulates the frequency, rate or extent of TORC1 signaling. tmpzr1t_l9r_go_relaxed.owl regulation of TORC1 signal transduction jl 2014-09-15T13:35:39Z biological_process owl:Class GO:0032006 biolink:NamedThing regulation of TOR signaling Any process that modulates the frequency, rate or extent of TOR signaling. tmpzr1t_l9r_go_relaxed.owl regulation of TOR signaling pathway|regulation of target of rapamycin signaling pathway|regulation of target of rapamycin signalling pathway|regulation of TOR signalling pathway|regulation of TOR signaling cascade biological_process owl:Class GO:0010904 biolink:NamedThing regulation of UDP-glucose catabolic process Any process that modulates the rate, frequency or extent of UDP-glucose catabolism. UDP-glucose catabolic processes are the chemical reactions and pathways resulting in the breakdown of UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl regulation of UDP-glucose catabolism biological_process owl:Class GO:0019800 biolink:NamedThing peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan The formation of a cross-link between peptide chains mediated by a chondroitin 4-sulfate glycosaminoglycan that originates from a typical O-glycosidic link to serine of one chain; the other chain is esterified, via the alpha-carbon of its C-terminal Asp, to C-6 of an internal N-acetylgalactosamine of the glycosaminoglycan chain. tmpzr1t_l9r_go_relaxed.owl peptide cross-linking via chondroitin 4-sulphate glycosaminoglycan RESID:AA0219 biological_process owl:Class GO:0018209 biolink:NamedThing peptidyl-serine modification The modification of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000277 biolink:NamedThing [cytochrome c]-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + cytochrome c L-lysine = S-adenosyl-L-homocysteine + cytochrome c N6-methyl-L-lysine. This is the addition of a methyl group to the N6 atom of a lysine residue in cytochrome c. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:cytochrome c-L-lysine 6-N-methyltransferase activity|S-adenosyl-L-methionine:cytochrome c-L-lysine N6-methyltransferase activity|cytochrome c-specific protein-lysine methyltransferase activity|cytochrome c (lysine) methyltransferase activity|cytochrome c-lysine N-methyltransferase activity|cytochrome c methyltransferase activity|cytochrome c-specific protein methylase III activity RHEA:24312|EC:2.1.1.59|MetaCyc:2.1.1.59-RXN molecular_function owl:Class GO:0016279 biolink:NamedThing protein-lysine N-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8932276|Reactome:R-HSA-8932243|Reactome:R-HSA-8931858|Reactome:R-HSA-8865237|Reactome:R-HSA-8932275|Reactome:R-HSA-8932413|Reactome:R-HSA-8931974|Reactome:R-HSA-212263|Reactome:R-HSA-8932221 molecular_function owl:Class GO:0046060 biolink:NamedThing dATP metabolic process The chemical reactions and pathways involving dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate). tmpzr1t_l9r_go_relaxed.owl dATP metabolism biological_process owl:Class GO:0009151 biolink:NamedThing purine deoxyribonucleotide metabolic process The chemical reactions and pathways involving purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleotide metabolism biological_process owl:Class GO:1900840 biolink:NamedThing regulation of helvolic acid biosynthetic process Any process that modulates the frequency, rate or extent of helvolic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl di 2012-06-07T09:38:33Z biological_process owl:Class GO:1901381 biolink:NamedThing positive regulation of potassium ion transmembrane transport Any process that activates or increases the frequency, rate or extent of potassium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl activation of potassium ion transmembrane transport|upregulation of potassium ion transmembrane transport|up-regulation of potassium ion transmembrane transport|positive regulation of potassium ion membrane transport|up regulation of potassium ion transmembrane transport rl 2012-09-28T15:59:25Z biological_process owl:Class GO:0043268 biolink:NamedThing positive regulation of potassium ion transport Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl upregulation of potassium ion transport|up-regulation of potassium ion transport|positive regulation of potassium transport|positive regulation of K+ transport|activation of potassium ion transport|positive regulation of potassium ion conductance|up regulation of potassium ion transport|positive regulation of K+ conductance|positive regulation of potassium conductance|stimulation of potassium ion transport biological_process owl:Class GO:2001097 biolink:NamedThing laminaritriose transport The directed movement of a laminaritrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:11:36Z biological_process owl:Class GO:2001088 biolink:NamedThing trisaccharide transport The directed movement of a trisaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T12:59:46Z biological_process owl:Class GO:1901748 biolink:NamedThing leukotriene D4 metabolic process The chemical reactions and pathways involving leukotriene D4. tmpzr1t_l9r_go_relaxed.owl leukotriene D4 metabolism yaf 2013-01-14T10:56:12Z biological_process owl:Class GO:0032437 biolink:NamedThing cuticular plate A dense network of actin filaments found beneath the apical cell surface of hair cells, and into which stereocilia are inserted. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032539 biolink:NamedThing negative regulation of host-seeking behavior Any process that stops, prevents, or reduces the frequency, rate or extent of any behavior associated with finding a host organism. tmpzr1t_l9r_go_relaxed.owl inhibition of host-seeking behavior|down regulation of host-seeking behavior|negative regulation of host-seeking behaviour|downregulation of host-seeking behavior|down-regulation of host-seeking behavior biological_process owl:Class GO:0032538 biolink:NamedThing regulation of host-seeking behavior Any process that modulates the frequency, rate or extent of any behavior associated with finding a host organism. tmpzr1t_l9r_go_relaxed.owl regulation of host-seeking behaviour biological_process owl:Class GO:0050666 biolink:NamedThing regulation of homocysteine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. tmpzr1t_l9r_go_relaxed.owl regulation of homocysteine metabolism|regulation of Hcy metabolic process|regulation of Hcy metabolism biological_process owl:Class GO:0045710 biolink:NamedThing negative regulation of larval salivary gland boundary specification Any process that stops, prevents, or reduces the frequency, rate or extent of salivary gland determination in a larval organism. tmpzr1t_l9r_go_relaxed.owl downregulation of larval salivary gland determination|down regulation of larval salivary gland determination|negative regulation of larval salivary gland determination|inhibition of larval salivary gland determination|down-regulation of larval salivary gland determination biological_process owl:Class GO:0051149 biolink:NamedThing positive regulation of muscle cell differentiation Any process that activates or increases the frequency, rate or extent of muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of muscle cell differentiation|upregulation of muscle cell differentiation|up regulation of muscle cell differentiation|activation of muscle cell differentiation|up-regulation of muscle cell differentiation biological_process owl:Class GO:0051147 biolink:NamedThing regulation of muscle cell differentiation Any process that modulates the frequency, rate or extent of muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019713 biolink:NamedThing peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from glutamine The coupled methyl esterification and deamidation of peptidyl-glutamine. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-glutamic acid 5-methyl ester anabolism from glutamine|peptidyl-L-glutamic acid 5-methyl ester synthesis from glutamine|peptidyl-L-glutamic acid 5-methyl ester formation from glutamine RESID:AA0072 biological_process owl:Class GO:0018390 biolink:NamedThing peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from peptidyl-glutamic acid or peptidyl-glutamine The methyl esterification of peptidyl-glutamic acid or peptidyl-glutamine to form the derivative glutamic acid 5-methyl ester. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-glutamic acid 5-methyl ester synthesis from peptidyl-glutamic acid or peptidyl-glutamine|peptidyl-L-glutamic acid 5-methyl ester formation from peptidyl-glutamic acid or peptidyl-glutamine|peptidyl-L-glutamic acid 5-methyl ester anabolism from peptidyl-glutamic acid or peptidyl-glutamine RESID:AA0072 biological_process owl:Class GO:0034617 biolink:NamedThing tetrahydrobiopterin binding Binding to a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions. tmpzr1t_l9r_go_relaxed.owl H4biopterin binding|BH4 binding|sapropterin binding molecular_function owl:Class GO:0019290 biolink:NamedThing siderophore biosynthetic process The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action. tmpzr1t_l9r_go_relaxed.owl siderophore synthesis|siderophore biosynthesis|siderophore anabolism|siderophore biosynthetic process, peptide modification|siderochrome biosynthetic process|siderophore formation|siderochrome biosynthesis|siderophore biosynthetic process, peptide formation GO:0031180|GO:0031178 biological_process owl:Class GO:1902970 biolink:NamedThing premeiotic DNA replication DNA duplex unwinding Any DNA duplex unwinding involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA duplex unwinding involved in meiotic DNA replication|DNA duplex unwinding involved in meiotic cell cycle DNA replication jl 2014-05-06T15:20:41Z biological_process owl:Class GO:0070192 biolink:NamedThing chromosome organization involved in meiotic cell cycle A process of chromosome organization that is involved in a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic chromosome organization|chromosome organisation involved in meiosis biological_process owl:Class GO:0015081 biolink:NamedThing sodium ion transmembrane transporter activity Enables the transfer of sodium ions (Na+) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl sodium transporter activity GO:0022816 molecular_function owl:Class GO:0071781 biolink:NamedThing endoplasmic reticulum cisternal network A subcompartment of the endoplasmic reticulum consisting of flattened, disc-shaped domains known as cisternae. These are typically found close to the nucleus and are generally more prominent in secretory cells. tmpzr1t_l9r_go_relaxed.owl ER cisternal network mah 2010-09-01T01:29:54Z cellular_component owl:Class GO:0098827 biolink:NamedThing endoplasmic reticulum subcompartment A distinct region of the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034787 biolink:NamedThing 1-hydro-1,1a-dihydroxy-9-fluorenone dehydrogenase activity Catalysis of the reaction: 1-hydro-1,1a-dihydroxy-9-fluorenone + H2O = 2,3-dihydroxy-2'-carboxybiphenyl + 3 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1040 molecular_function owl:Class GO:0046464 biolink:NamedThing acylglycerol catabolic process The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. tmpzr1t_l9r_go_relaxed.owl acylglycerol degradation|acylglycerol breakdown|acylglycerol catabolism biological_process owl:Class GO:0046461 biolink:NamedThing neutral lipid catabolic process The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity. tmpzr1t_l9r_go_relaxed.owl neutral lipid degradation|neutral lipid catabolism|neutral lipid breakdown biological_process owl:Class GO:1901757 biolink:NamedThing butirosin catabolic process The chemical reactions and pathways resulting in the breakdown of butirosin. tmpzr1t_l9r_go_relaxed.owl butirosin catabolism|butirosin degradation|butirosin breakdown yaf 2013-01-14T11:36:22Z biological_process owl:Class GO:0016139 biolink:NamedThing glycoside catabolic process The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. tmpzr1t_l9r_go_relaxed.owl glycoside breakdown|glycoside degradation|O-glycoside catabolism|O-glycoside breakdown|glycoside catabolism|O-glycoside degradation|O-glycoside catabolic process GO:0016142 biological_process owl:Class GO:1904671 biolink:NamedThing negative regulation of cell differentiation involved in stem cell population maintenance Any negative regulation of cell differentiation that is involved in stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl downregulation of cell differentiation involved in maintenance of pluripotency|downregulation of cell differentiation involved in stem cell population maintenance|down regulation of cell differentiation involved in maintenance of pluripotency|down-regulation of cell differentiation involved in stem cell population maintenance|down-regulation of cell differentiation involved in maintenance of pluripotency|inhibition of cell differentiation involved in stem cell population maintenance|inhibition of cell differentiation involved in maintenance of pluripotency|negative regulation of cell differentiation involved in maintenance of pluripotency|down regulation of cell differentiation involved in stem cell population maintenance tb 2015-09-12T00:46:08Z biological_process owl:Class GO:0045596 biolink:NamedThing negative regulation of cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of cell differentiation|down-regulation of cell differentiation|downregulation of cell differentiation|down regulation of cell differentiation biological_process owl:Class GO:0071468 biolink:NamedThing cellular response to acidic pH Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl cellular response to acidity This term should be used to annotate instances where a cell is responding to a chemical that is playing the role of an acid (e.g. proton donor) and therefore lowering the pH. If instead you wish to describe a response to a specific acid as a chemical, such as the anion portion of glutamate, please annotate to the appropriate child of GO:0071229 'cellular response to acid chemical'. mah 2009-12-18T11:42:35Z biological_process owl:Class GO:0010447 biolink:NamedThing response to acidic pH Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl response to acidity This term should be used to annotate instances where a cell or organism is responding to a chemical that is playing the role of an acid (e.g. proton donor) and therefore lowering the pH. If instead you wish to describe a response to a specific acid as a chemical, such as the anion portion of glutamate, please annotate to the appropriate child of GO:0001101 'response to acid chemical'. biological_process owl:Class GO:0001642 biolink:NamedThing group III metabotropic glutamate receptor activity A G protein-coupled receptor that is activated by L-AP-4 and inhibits adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001640 biolink:NamedThing adenylate cyclase inhibiting G protein-coupled glutamate receptor activity Combining with glutamate and transmitting the signal across the membrane by activating the alpha-subunit of an associated heterotrimeric G-protein complex to inhibit downstream adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl adenylyl cyclase inhibiting metabotropic glutamate receptor activity|adenylate cyclase inhibiting metabotropic glutamate receptor activity molecular_function owl:Class GO:1903540 biolink:NamedThing establishment of protein localization to postsynaptic membrane The directed movement of a protein to a specific location in a postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation in postsynaptic membrane|establishment of protein localisation to postsynaptic membrane|establishment of protein localization in postsynaptic membrane kmv 2014-10-10T11:24:03Z biological_process owl:Class GO:0090150 biolink:NamedThing establishment of protein localization to membrane The directed movement of a protein to a specific location in a membrane. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization in membrane|establishment of protein localisation in membrane tb 2009-12-08T03:18:51Z biological_process owl:Class GO:1905057 biolink:NamedThing voltage-gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium levels Any voltage-gated calcium channel activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl voltage-gated calcium ion channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration|depolarization-activated voltage-gated calcium channel involved in regulation of postsynaptic cytosolic calcium ion concentration|voltage gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration|depolarization-activated voltage gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration|voltage-dependent calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration|voltage-gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium levels|dihydropyridine-sensitive calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration|voltage-sensitive calcium channel involved in regulation of postsynaptic cytosolic calcium ion concentration|depolarization-activated voltage-gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration dos 2016-03-18T12:31:48Z molecular_function owl:Class GO:0099511 biolink:NamedThing voltage-gated calcium channel activity involved in regulation of cytosolic calcium levels Regulation of cytosolic calcium ion concentrations via the directed movement of calcium ions across the plasma-membrane into the cytosol via the action of a voltage-gated calcium ion channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018611 biolink:NamedThing toluate dioxygenase activity Catalysis of the reaction: methylbenzoate + NADH + O2 + H+ = NAD+ + 1,2-dihydroxymethylcyclohexa-3,5-dienecarboxylate. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_enzymeID:e0190 molecular_function owl:Class GO:0016651 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl NAD(P)H dehydrogenase|oxidoreductase activity, acting on NADH or NADPH|oxidoreductase activity, acting on NADH or NADPH, other acceptor EC:1.6.-.-|Reactome:R-HSA-8956458|Reactome:R-HSA-109343 molecular_function owl:Class GO:0051744 biolink:NamedThing 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity Catalysis of the reaction: divinyl protochlorophyllide a + NADPH + H+ = monovinyl protochlorophyllide a + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-72|RHEA:48884 molecular_function owl:Class GO:0061157 biolink:NamedThing mRNA destabilization Any process that decreases the stability of an mRNA molecule, making it more vulnerable to degradative processes. Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-22T08:42:10Z biological_process owl:Class GO:0098808 biolink:NamedThing mRNA cap binding Binding to a 7-methylguanosine (m7G) group or derivative located at the 5' end of an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905956 biolink:NamedThing positive regulation of endothelial tube morphogenesis Any process that activates or increases the frequency, rate or extent of endothelial tube morphogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of endothelial tube morphogenesis|activation of endothelial tube morphogenesis|upregulation of endothelial tube morphogenesis|up-regulation of endothelial tube morphogenesis rph 2017-02-21T15:17:39Z biological_process owl:Class GO:0061914 biolink:NamedThing negative regulation of growth plate cartilage chondrocyte proliferation Any process that decreases the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl dph 2017-07-10T17:39:17Z biological_process owl:Class GO:0008285 biolink:NamedThing negative regulation of cell population proliferation Any process that stops, prevents or reduces the rate or extent of cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of cell proliferation|inhibition of cell proliferation|negative regulation of cell proliferation|down-regulation of cell proliferation|down regulation of cell proliferation biological_process owl:Class GO:0090730 biolink:NamedThing Las1 complex A four subunit complex, that comprises all the necessary RNA processing enzymes (endonuclease, polynucleotide kinase, and exonuclease) to mediate 'cistronic rRNA transcript ITS2 (internal transcribed spacer) cleavage' (GO:0000448). tmpzr1t_l9r_go_relaxed.owl Las1-Grc3-Rat1-Rai1 tb 2017-01-05T16:51:46Z cellular_component owl:Class GO:1905354 biolink:NamedThing exoribonuclease complex A protein complex which is capable of exoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl An example of this is DIS3 in human (Q9Y2L1) in PMID:17174896 (inferred from direct assay). bhm 2016-08-08T10:18:29Z cellular_component owl:Class GO:0008887 biolink:NamedThing glycerate kinase activity Catalysis of the reaction: D-glycerate + ATP = 3-phospho-D-glycerate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl D-glyceric acid kinase activity|ATP:D-glycerate 2-phosphotransferase activity|ATP:(R)-glycerate 3-phosphotransferase activity|D-glycerate 3-kinase activity|GK|D-glycerate kinase activity|glycerate-3-kinase activity|glycerate kinase (phosphorylating) KEGG_REACTION:R01514|RHEA:23516|EC:2.7.1.31|Reactome:R-HSA-6799495|MetaCyc:GLY3KIN-RXN molecular_function owl:Class GO:1904119 biolink:NamedThing negative regulation of otic vesicle morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of otic vesicle morphogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of otic vesicle morphogenesis|downregulation of otic vesicle morphogenesis|inhibition of otic vesicle morphogenesis|down-regulation of otic vesicle morphogenesis pga 2015-04-07T14:01:02Z biological_process owl:Class GO:0042207 biolink:NamedThing styrene catabolic process The chemical reactions and pathways resulting in the breakdown of styrene, an aromatic hydrocarbon liquid used in the manufacture of polystyrene. tmpzr1t_l9r_go_relaxed.owl styrene breakdown|styrene catabolism|styrene degradation UM-BBD_pathwayID:sty biological_process owl:Class GO:0019439 biolink:NamedThing aromatic compound catabolic process The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring. tmpzr1t_l9r_go_relaxed.owl aromatic compound breakdown|aromatic hydrocarbon catabolic process|aromatic compound catabolism|aromatic compound degradation|aromatic hydrocarbon catabolism biological_process owl:Class GO:0032214 biolink:NamedThing negative regulation of telomere maintenance via semi-conservative replication Any process that stops, prevents, or reduces the frequency, rate or extent of the semi-conservative replication of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl down regulation of telomere maintenance via semi-conservative replication|inhibition of telomere maintenance via semi-conservative replication|downregulation of telomere maintenance via semi-conservative replication|down-regulation of telomere maintenance via semi-conservative replication biological_process owl:Class GO:0032213 biolink:NamedThing regulation of telomere maintenance via semi-conservative replication Any process that modulates the frequency, rate or extent of the semi-conservative replication of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009103 biolink:NamedThing lipopolysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide biosynthesis|LPS biosynthetic process|lipopolysaccharide anabolism|lipopolysaccharide formation|lipopolysaccharide synthesis KEGG_PATHWAY:map00540 biological_process owl:Class GO:0008653 biolink:NamedThing lipopolysaccharide metabolic process The chemical reactions and pathways involving lipopolysaccharides, a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide metabolism|LPS metabolic process biological_process owl:Class GO:0036406 biolink:NamedThing anchored component of periplasmic side of cell outer membrane The component of the cell outer membrane consisting of gene products and protein complexes that are tethered to the periplasmic side of membrane by only a covalently attached anchor, embedded in the periplasmic side of the membrane only. tmpzr1t_l9r_go_relaxed.owl anchored to internal side of cell outer membrane|anchored to periplasmic side of cell outer membrane bf 2013-08-15T11:45:39Z cellular_component owl:Class GO:0036405 biolink:NamedThing anchored component of cell outer membrane The component of the cell outer membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl anchored to cell outer membrane bf 2013-08-15T11:40:41Z cellular_component owl:Class GO:0051940 biolink:NamedThing regulation of catecholamine uptake involved in synaptic transmission Any process that modulates the frequency, rate or extent of the directed movement of catecholamine neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl regulation of catecholamine neurotransmitter uptake|regulation of catecholamine neurotransmitter reuptake|regulation of catecholamine uptake during transmission of nerve impulse biological_process owl:Class GO:1905109 biolink:NamedThing regulation of pulmonary blood vessel remodeling Any process that modulates the frequency, rate or extent of pulmonary blood vessel remodeling. tmpzr1t_l9r_go_relaxed.owl bc 2016-04-06T13:07:24Z biological_process owl:Class GO:0060312 biolink:NamedThing regulation of blood vessel remodeling Any process that modulates the rate, frequency or extent of blood vessel remodeling, the reorganization or renovation of existing blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010520 biolink:NamedThing regulation of reciprocal meiotic recombination Any process that modulates the frequency, rate or extent of recombination during meiosis. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900761 biolink:NamedThing averantin metabolic process The chemical reactions and pathways involving averantin. tmpzr1t_l9r_go_relaxed.owl averantin metabolism di 2012-06-04T09:14:22Z biological_process owl:Class GO:0021999 biolink:NamedThing neural plate anterior/posterior regionalization The process that regulates the coordinated growth and differentiation that establishes the non-random anterior-posterior spatial arrangement of the neural plate. tmpzr1t_l9r_go_relaxed.owl neural plate anterior/posterior pattern formation biological_process owl:Class GO:0033848 biolink:NamedThing N2-(2-carboxyethyl)arginine synthase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + L-arginine = N(2)-(2-carboxyethyl)-L-arginine + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl N2-(2-carboxyethyl)arginine synthetase activity|glyceraldehyde-3-phosphate:L-arginine 2-N-(2-hydroxy-3-oxopropyl) transferase (2-carboxyethyl-forming) activity|glyceraldehyde-3-phosphate:L-arginine N2-(2-hydroxy-3-oxopropyl) transferase (2-carboxyethyl-forming) activity|CEAS|CEA synthetase activity EC:2.5.1.66|KEGG_REACTION:R05465|MetaCyc:2.5.1.66-RXN|RHEA:10556 molecular_function owl:Class GO:1902394 biolink:NamedThing positive regulation of exodeoxyribonuclease activity Any process that activates or increases the frequency, rate or extent of exodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl upregulation of exodeoxyribonuclease activity|activation of exodeoxyribonuclease activity|up-regulation of exodeoxyribonuclease activity|up regulation of exodeoxyribonuclease activity jl 2013-09-11T14:56:38Z biological_process owl:Class GO:0008104 biolink:NamedThing protein localization Any process in which a protein is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl asymmetric protein localisation|establishment and maintenance of protein localization|protein localisation|establishment and maintenance of asymmetric protein localization|asymmetric protein localization GO:0008105 biological_process owl:Class GO:0050790 biolink:NamedThing regulation of catalytic activity Any process that modulates the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl regulation of metalloenzyme activity|regulation of enzyme activity GO:0048552 biological_process owl:Class GO:1905294 biolink:NamedThing positive regulation of neural crest cell differentiation Any process that activates or increases the frequency, rate or extent of neural crest cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of neural crest cell differentiation|upregulation of neural crest cell differentiation|up-regulation of neural crest cell differentiation|up regulation of neural crest cell differentiation rl 2016-06-28T15:02:16Z biological_process owl:Class GO:0043410 biolink:NamedThing positive regulation of MAPK cascade Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade. tmpzr1t_l9r_go_relaxed.owl stimulation of MAPK cascade|activation of MAPKKK cascade|positive regulation of MAP kinase cascade|stimulation of MAPKKK cascade|up regulation of MAPKKK cascade|upregulation of MAPKKK cascade|upregulation of MAPK cascade|positive regulation of mitogen-activated protein kinase cascade|activation of MAPK cascade|up-regulation of MAPKKK cascade|up-regulation of MAPK cascade|positive regulation of mitogen activated protein kinase kinase kinase cascade|positive regulation of MAPKKK cascade|positive regulation of MAP kinase kinase kinase cascade|positive regulation of mitogen-activated protein kinase kinase kinase cascade biological_process owl:Class GO:0043362 biolink:NamedThing nucleate erythrocyte maturation A developmental process, independent of morphogenetic (shape) change, that is required for a nucleate erythrocyte to attain its fully functional state. A nucleate erythrocyte is an erythrocyte with a nucleus. tmpzr1t_l9r_go_relaxed.owl nucleate RBC maturation|nucleate red blood cell maturation biological_process owl:Class GO:0043249 biolink:NamedThing erythrocyte maturation A developmental process, independent of morphogenetic (shape) change, that is required for an erythrocyte to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl red blood cell maturation|RBC maturation biological_process owl:Class GO:0039662 biolink:NamedThing host cell outer membrane A lipid bilayer that forms the outermost layer of the cell envelope, occurring in a host cell. tmpzr1t_l9r_go_relaxed.owl host cell envelope outer membrane|outer membrane of host cell bf 2013-08-25T10:48:41Z cellular_component owl:Class GO:0044384 biolink:NamedThing host outer membrane The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites, occurring in a host cell. tmpzr1t_l9r_go_relaxed.owl host cell outer membrane This term covers the outer membrane of the host cell envelope or the outer membrane of a host organelle. For the outer layer of the host cell envelope specifically, see host cell outer membrane ; GO:0039662. jl 2011-12-13T04:02:07Z cellular_component owl:Class GO:0002792 biolink:NamedThing negative regulation of peptide secretion Any process that stops, prevents, or reduces the frequency, rate, or extent of peptide secretion. tmpzr1t_l9r_go_relaxed.owl down-regulation of peptide secretion|downregulation of peptide secretion|inhibition of peptide secretion|down regulation of peptide secretion biological_process owl:Class GO:0032694 biolink:NamedThing negative regulation of interleukin-11 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-11 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-11 biosynthetic process|inhibition of interleukin-11 production|downregulation of interleukin-11 production|down regulation of interleukin-11 production|negative regulation of IL-11 production|down-regulation of interleukin-11 production|negative regulation of interleukin-11 secretion GO:0045364|GO:0150170 biological_process owl:Class GO:0062014 biolink:NamedThing negative regulation of small molecule metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of a small molecule metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of small molecule metabolism dph 2018-03-19T14:27:23Z biological_process owl:Class GO:0070239 biolink:NamedThing regulation of activated T cell autonomous cell death Any process that modulates the occurrence or rate of activated T cell autonomous cell death. tmpzr1t_l9r_go_relaxed.owl regulation of activated cell autonomous cell death|regulation of activated T-lymphocyte autonomous cell death|regulation of activated T-cell autonomous cell death|regulation of ACAD|regulation of activated T cell apoptosis|regulation of activated T lymphocyte autonomous cell death biological_process owl:Class GO:0005337 biolink:NamedThing nucleoside transmembrane transporter activity Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl intracellular nucleoside transmembrane transporter activity Reactome:R-HSA-727740|Reactome:R-HSA-727768|Reactome:R-HSA-5628807|Reactome:R-HSA-109529|Reactome:R-HSA-109536|Reactome:R-HSA-109534|Reactome:R-HSA-727749|Reactome:R-HSA-109527|Reactome:R-HSA-727767 molecular_function owl:Class GO:0070372 biolink:NamedThing regulation of ERK1 and ERK2 cascade Any process that modulates the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. tmpzr1t_l9r_go_relaxed.owl regulation of ERK1 and ERK2 signaling pathway|regulation of ERK2 cascade|regulation of ERK1 cascade|regulation of MAPK1 cascade|regulation of ERK1/2 cascade|regulation of ERK cascade|regulation of ERK1 and ERK2 signalling pathway|regulation of MAPK3 cascade biological_process owl:Class GO:1902890 biolink:NamedThing regulation of root hair elongation Any process that modulates the frequency, rate or extent of root hair elongation. tmpzr1t_l9r_go_relaxed.owl als 2014-04-07T13:46:40Z biological_process owl:Class GO:0004321 biolink:NamedThing fatty-acyl-CoA synthase activity Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADH + 2n NADPH + 4n H+ = a long-chain acyl-CoA + n CoA + n CO2 + 2n NAD+ + 2n NADP+. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl- reducing)|fatty acyl CoA synthase activity|yeast fatty acid synthase activity EC:2.3.1.86|RHEA:22896|MetaCyc:FATTY-ACYL-COA-SYNTHASE-RXN molecular_function owl:Class GO:0010748 biolink:NamedThing negative regulation of long-chain fatty acid import across plasma membrane Any process that decreases the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of plasma membrane long-chain fatty acid transport biological_process owl:Class GO:0051494 biolink:NamedThing negative regulation of cytoskeleton organization Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl downregulation of cytoskeleton organization|negative regulation of cytoskeleton organization and biogenesis|down regulation of cytoskeleton organization|negative regulation of cytoskeleton organisation|down-regulation of cytoskeleton organization|inhibition of cytoskeleton organization biological_process owl:Class GO:0071645 biolink:NamedThing positive regulation of chemokine (C-C motif) ligand 4 production Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 4. tmpzr1t_l9r_go_relaxed.owl positive regulation of MIP-1b production|positive regulation of macrophage inflammatory protein production|positive regulation of CCL4 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0071643 biolink:NamedThing regulation of chemokine (C-C motif) ligand 4 production Any process that modulates the frequency, rate, or extent of production of chemokine (C-C motif) ligand 4. tmpzr1t_l9r_go_relaxed.owl regulation of MIP-1b production|regulation of CCL4 production|regulation of macrophage inflammatory protein production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:1902730 biolink:NamedThing positive regulation of proteoglycan biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl activation of proteoglycan anabolism|upregulation of proteoglycan formation|up regulation of proteoglycan biosynthetic process|upregulation of proteoglycan synthesis|up regulation of proteoglycan synthesis|up-regulation of proteoglycan formation|up regulation of proteoglycan formation|up regulation of proteoglycan biosynthesis|upregulation of proteoglycan anabolism|up-regulation of proteoglycan biosynthesis|activation of proteoglycan biosynthesis|up-regulation of proteoglycan biosynthetic process|positive regulation of proteoglycan formation|upregulation of proteoglycan biosynthesis|activation of proteoglycan formation|positive regulation of proteoglycan synthesis|up-regulation of proteoglycan synthesis|positive regulation of proteoglycan anabolism|up regulation of proteoglycan anabolism|activation of proteoglycan synthesis|positive regulation of proteoglycan biosynthesis|up-regulation of proteoglycan anabolism|upregulation of proteoglycan biosynthetic process|activation of proteoglycan biosynthetic process mr 2014-02-24T16:10:52Z biological_process owl:Class GO:0010560 biolink:NamedThing positive regulation of glycoprotein biosynthetic process Any process that increases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035169 biolink:NamedThing lymph gland plasmatocyte differentiation The process in which a relatively unspecialized larval lymph gland-derived hemocyte precursor cell acquires the specialized features of the phagocytic blood-cell type, the plasmatocyte. tmpzr1t_l9r_go_relaxed.owl lymph gland plasmatocyte cell differentiation biological_process owl:Class GO:0042387 biolink:NamedThing plasmatocyte differentiation The process in which a hemocyte precursor cell acquires the characteristics of the phagocytic blood-cell type, the plasmatocyte. Plasmatocytes are a class of arthropod hemocytes important in the cellular defense response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021707 biolink:NamedThing cerebellar granule cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar granule cell. Differentiation includes the processes involved in commitment of a neuroblast to a granule cell fate. A granule cell is a glutamatergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021533 biolink:NamedThing cell differentiation in hindbrain The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mature cells of the hindbrain. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034815 biolink:NamedThing cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate lyase activity Catalysis of the reaction: cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate = 10-oxabenzo(def)chrysen-9-one + formate + H+. tmpzr1t_l9r_go_relaxed.owl EC:4.1.3.-|UM-BBD_reactionID:r1135 molecular_function owl:Class GO:0097628 biolink:NamedThing distal tip cell migration The orderly movement of a distal tip cell. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-20T16:06:53Z biological_process owl:Class GO:0016477 biolink:NamedThing cell migration The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_migration biological_process owl:Class GO:2000594 biolink:NamedThing positive regulation of metanephric DCT cell differentiation Any process that activates or increases the frequency, rate or extent of metanephric DCT cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of metanephric distal convoluted tubule cell differentiation yaf 2011-04-11T01:40:41Z biological_process owl:Class GO:0009100 biolink:NamedThing glycoprotein metabolic process The chemical reactions and pathways involving glycoproteins, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycoprotein metabolism biological_process owl:Class GO:0019538 biolink:NamedThing protein metabolic process The chemical reactions and pathways involving a protein. Includes protein modification. tmpzr1t_l9r_go_relaxed.owl protein metabolic process and modification|protein metabolism|multicellular organismal protein metabolic process|protein metabolism and modification Wikipedia:Protein_metabolism GO:0044268|GO:0006411 biological_process owl:Class GO:1900586 biolink:NamedThing arugosin catabolic process The chemical reactions and pathways resulting in the breakdown of arugosin. tmpzr1t_l9r_go_relaxed.owl arugosin breakdown|arugosin degradation|arugosin catabolism di 2012-05-15T06:48:37Z biological_process owl:Class GO:1901575 biolink:NamedThing organic substance catabolic process The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon. tmpzr1t_l9r_go_relaxed.owl organic substance catabolism|organic molecular entity degradation|organic molecular entity catabolism|organic substance degradation|organic molecular entity catabolic process|organic substance breakdown|organic molecular entity breakdown pr 2012-11-05T11:04:36Z biological_process owl:Class GO:0045159 biolink:NamedThing myosin II binding Binding to a class II myosin, any member of the class of 'conventional' double-headed myosins that includes muscle myosin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0017022 biolink:NamedThing myosin binding Binding to a myosin; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments. tmpzr1t_l9r_go_relaxed.owl myosin phosphatase myosin binding molecular_function owl:Class GO:0033546 biolink:NamedThing myo-inositol hexakisphosphate biosynthetic process, via inositol 1,3,4-trisphosphate The chemical reactions and pathways resulting in the formation of 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate, phytate, by a pathway using inositol 1,4,5-trisphosphate produced from phosphatidylinositol 4,5-biphosphate hydrolysis by phospholipase C; in this pathway, inositol 1,4,5-trisphosphate is first converted to inositol 1,3,4-trisphosphate, and then phosphorylated further. tmpzr1t_l9r_go_relaxed.owl myo-inositol hexakisphosphate biosynthesis, via inositol 1,3,4-trisphosphate|myo-inositol hexakisphosphate formation, via inositol 1,3,4-trisphosphate|myo-inositol hexakisphosphate anabolism, via inositol 1,3,4-trisphosphate|myo-inositol hexakisphosphate synthesis, via inositol 1,3,4-trisphosphate|phytate biosynthetic process, via inositol 1,3,4-trisphosphate|phytate biosynthesis, via inositol 1,3,4-trisphosphate MetaCyc:PWY-6554 biological_process owl:Class GO:0033545 biolink:NamedThing myo-inositol hexakisphosphate biosynthetic process, lipid-dependent The chemical reactions and pathways resulting in the formation of 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate, phytate, by a pathway using inositol 1,4,5-trisphosphate produced from phosphatidylinositol 4,5-biphosphate hydrolysis by phospholipase C. tmpzr1t_l9r_go_relaxed.owl myo-inositol hexakisphosphate biosynthesis, lipid-dependent|myo-inositol hexakisphosphate synthesis, lipid-dependent|myo-inositol hexakisphosphate anabolism, lipid-dependent|phytate biosynthetic process, lipid-dependent|phytate biosynthesis, lipid-dependent|myo-inositol hexakisphosphate formation, lipid-dependent MetaCyc:PWY-6555 biological_process owl:Class GO:1902931 biolink:NamedThing negative regulation of alcohol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of alcohol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of alcohol biosynthetic process|inhibition of alcohol anabolism|down-regulation of alcohol biosynthesis|down regulation of alcohol anabolism|down-regulation of alcohol biosynthetic process|down-regulation of alcohol synthesis|down-regulation of alcohol formation|down-regulation of alcohol anabolism|downregulation of alcohol anabolism|inhibition of alcohol synthesis|downregulation of alcohol formation|downregulation of alcohol biosynthesis|negative regulation of alcohol synthesis|inhibition of alcohol formation|inhibition of alcohol biosynthetic process|inhibition of alcohol biosynthesis|down regulation of alcohol biosynthetic process|downregulation of alcohol synthesis|down regulation of alcohol synthesis|negative regulation of alcohol anabolism|down regulation of alcohol formation|negative regulation of alcohol biosynthesis|negative regulation of alcohol formation|down regulation of alcohol biosynthesis|negative regulation of solventogenesis tt 2014-04-22T21:55:13Z biological_process owl:Class GO:1902930 biolink:NamedThing regulation of alcohol biosynthetic process Any process that modulates the frequency, rate or extent of alcohol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of alcohol formation|regulation of solventogenesis|regulation of alcohol biosynthesis|regulation of alcohol synthesis|regulation of alcohol anabolism tt 2014-04-22T21:55:03Z biological_process owl:Class GO:0043280 biolink:NamedThing positive regulation of cysteine-type endopeptidase activity involved in apoptotic process Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of caspase activity|stimulation of caspase activity|upregulation of caspase activity|activation of caspase activity|up regulation of caspase activity|up-regulation of caspase activity biological_process owl:Class GO:2001056 biolink:NamedThing positive regulation of cysteine-type endopeptidase activity Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of thiol endopeptidase activity|positive regulation of lysosomal cysteine-type endopeptidase pr 2011-09-09T08:53:43Z biological_process owl:Class GO:0014041 biolink:NamedThing regulation of neuron maturation Any process that modulates the frequency, rate or extent of neuron maturation, the process leading to the attainment of the full functional capacity of a neuron. This process is independent of morphogenetic change. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019369 biolink:NamedThing arachidonic acid metabolic process The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer. tmpzr1t_l9r_go_relaxed.owl arachidonic acid metabolism Wikipedia:Arachidonic_acid biological_process owl:Class GO:0033559 biolink:NamedThing unsaturated fatty acid metabolic process The chemical reactions and pathways involving an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. tmpzr1t_l9r_go_relaxed.owl unsaturated fatty acid metabolism MetaCyc:PWY-782|MetaCyc:PWY-762 biological_process owl:Class GO:0031724 biolink:NamedThing CXCR5 chemokine receptor binding Binding to a CXCR5 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl type 1 Burkitt's lymphoma receptor binding|CXCR5 chemokine receptor ligand molecular_function owl:Class GO:0045236 biolink:NamedThing CXCR chemokine receptor binding Binding to a chemokine receptor in the CXCR family. tmpzr1t_l9r_go_relaxed.owl CXC chemokine receptor ligand|C-X-C chemokine receptor ligand|alpha chemokine receptor binding|alpha chemokine receptor ligand molecular_function owl:Class GO:0061077 biolink:NamedThing chaperone-mediated protein folding The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-06T03:28:55Z biological_process owl:Class GO:0006457 biolink:NamedThing protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. tmpzr1t_l9r_go_relaxed.owl glycoprotein-specific chaperone activity|co-chaperonin activity|alpha-tubulin folding|chaperone activity|chaperonin-mediated tubulin folding|chaperonin ATPase activity|protein complex assembly, multichaperone pathway|beta-tubulin folding|co-chaperone activity|non-chaperonin molecular chaperone ATPase activity Wikipedia:Protein_folding GO:0007025|GO:0007024|GO:0007022 biological_process owl:Class GO:0043104 biolink:NamedThing positive regulation of GTP cyclohydrolase I activity Any process that activates or increases the activity of the enzyme GTP cyclohydrolase I. tmpzr1t_l9r_go_relaxed.owl stimulation of GTP cyclohydrolase I activity|activation of GTP cyclohydrolase I activity|up-regulation of GTP cyclohydrolase I activity|upregulation of GTP cyclohydrolase I activity|up regulation of GTP cyclohydrolase I activity biological_process owl:Class GO:0043095 biolink:NamedThing regulation of GTP cyclohydrolase I activity Any process that modulates the activity of the enzyme GTP cyclohydrolase I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900233 biolink:NamedThing positive regulation of single-species biofilm formation on inanimate substrate Any process that activates or increases the frequency, rate or extent of single-species biofilm formation on inanimate substrate. tmpzr1t_l9r_go_relaxed.owl activation of single-species biofilm formation on inanimate substrate|up regulation of single-species biofilm formation on inanimate substrate|up-regulation of single-species biofilm formation on inanimate substrate|upregulation of single-species biofilm formation on inanimate substrate di 2012-03-23T04:40:53Z biological_process owl:Class GO:1900231 biolink:NamedThing regulation of single-species biofilm formation on inanimate substrate Any process that modulates the frequency, rate or extent of single-species biofilm formation on inanimate substrate. tmpzr1t_l9r_go_relaxed.owl di 2012-03-23T04:40:35Z biological_process owl:Class GO:0010769 biolink:NamedThing regulation of cell morphogenesis involved in differentiation Any process that modulates the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903960 biolink:NamedThing negative regulation of anion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl inhibition of anion transmembrane transport|downregulation of anion transmembrane transport|down-regulation of anion transmembrane transport|down regulation of anion transmembrane transport pr 2015-02-25T13:52:35Z biological_process owl:Class GO:0032232 biolink:NamedThing negative regulation of actin filament bundle assembly Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of actin filament bundles. tmpzr1t_l9r_go_relaxed.owl down-regulation of actin filament bundle formation|downregulation of actin filament bundle formation|inhibition of actin filament bundle formation|down regulation of actin filament bundle formation biological_process owl:Class GO:1900971 biolink:NamedThing regulation of sarcinapterin biosynthetic process Any process that modulates the frequency, rate or extent of sarcinapterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of sarcinapterin formation|regulation of sarcinapterin synthesis|regulation of sarcinapterin biosynthesis|regulation of sarcinapterin anabolism tt 2012-06-14T03:59:44Z biological_process owl:Class GO:0009179 biolink:NamedThing purine ribonucleoside diphosphate metabolic process The chemical reactions and pathways involving purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside diphosphate metabolism biological_process owl:Class GO:0009185 biolink:NamedThing ribonucleoside diphosphate metabolic process The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside diphosphate metabolism biological_process owl:Class GO:1900671 biolink:NamedThing negative regulation of F-9775A biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of F-9775A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of F-9775A synthesis|inhibition of F-9775A biosynthetic process|inhibition of F-9775A synthesis|inhibition of F-9775A anabolism|down regulation of F-9775A formation|downregulation of F-9775A formation|negative regulation of F-9775A biosynthesis|down regulation of F-9775A anabolism|negative regulation of F-9775A anabolism|inhibition of F-9775A biosynthesis|down-regulation of F-9775A biosynthetic process|negative regulation of F-9775A synthesis|down-regulation of F-9775A biosynthesis|down regulation of F-9775A biosynthesis|down-regulation of F-9775A anabolism|down regulation of F-9775A biosynthetic process|down-regulation of F-9775A formation|downregulation of F-9775A anabolism|negative regulation of F-9775A formation|inhibition of F-9775A formation|down regulation of F-9775A synthesis|downregulation of F-9775A synthesis|downregulation of F-9775A biosynthetic process|downregulation of F-9775A biosynthesis di 2012-05-22T04:24:30Z biological_process owl:Class GO:2000658 biolink:NamedThing positive regulation of apolipoprotein binding Any process that activates or increases the frequency, rate or extent of apolipoprotein binding. tmpzr1t_l9r_go_relaxed.owl vk 2011-05-02T05:33:46Z biological_process owl:Class GO:0034452 biolink:NamedThing dynactin binding Binding to a dynactin complex; a large protein complex that activates dynein-based motor activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019100 biolink:NamedThing male germ-line sex determination The determination of sex and sexual phenotype in a male organism's germ line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018992 biolink:NamedThing germ-line sex determination The determination of sex and sexual phenotype in an organism's germ line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904567 biolink:NamedThing response to wortmannin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a wortmannin stimulus. tmpzr1t_l9r_go_relaxed.owl response to wartmannin sl 2015-08-19T16:22:28Z biological_process owl:Class GO:0050833 biolink:NamedThing pyruvate transmembrane transporter activity Enables the transfer of pyruvate, 2-oxopropanoate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity Reactome:R-HSA-372342 molecular_function owl:Class GO:0008028 biolink:NamedThing monocarboxylic acid transmembrane transporter activity Enables the transfer of monocarboxylic acids from one side of a membrane to the other. A monocarboxylic acid is an organic acid with one COOH group. tmpzr1t_l9r_go_relaxed.owl prostaglandin/thromboxane transporter activity|monocarboxylate carrier Reactome:R-HSA-5624211|Reactome:R-HSA-433698|Reactome:R-HSA-9645220|Reactome:R-HSA-429749 GO:0008505 molecular_function owl:Class GO:0010285 biolink:NamedThing L,L-diaminopimelate aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + LL-2,6-diaminopimelate = (S)-2,3,4,5-tetrahydrodipicolinate + L-glutamate + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl LL-DAP-AT activity|LL-diaminopimelate aminotransferase activity|LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase activity|LL-diaminopimelate transaminase activity|LL-DAP aminotransferase activity RHEA:23988|KEGG_REACTION:R07613|MetaCyc:RXN-7737|EC:2.6.1.83 GO:0043742 molecular_function owl:Class GO:0036503 biolink:NamedThing ERAD pathway The protein catabolic pathway which targets endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. It begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein modifications necessary for correct substrate transfer (e.g. ubiquitination), transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-associated degradation|endoplasmic reticulum-associated protein degradation pathway|ER-associated degradation pathway|protein degradation by ERAD ER-associated protein degradation (ERAD) pathways target misfolded ER lumenal proteins (ERAD-L), ER membrane proteins (ERAD-M), and ER proteins with misfolded cytosolic domains (ERAD-C) by recognizing aberrant proteins, retrotranslocating these substrates to the cytosol, followed by substrate ubiquitination and proteosomal-mediated degradation. In contrast the stress-induced homeostatically regulated protein degradation (SHRED) pathway (GO:0120174), although inducible by stress, targets diverse ER membrane, and cytosolic proteins as well as numerous other native proteins in the absence of stress. Stress results in the protease-mediated (Nma111p) generation of a Roq1p cleavage product that then binds to the type-1 active site of Ubr1p, altering its substrate specificity, and leading to the proteasome-mediated degradation of both misfolded and native proteins. Although the SHRED pathway may contain some components in common with ERAD pathways (GO:0036503), such as UBR1, RAD6 and CDC48, other ERAD components, such as HRD1 and DOA10, do not appear to be involved, and as such these pathways are currently considered to be distinct. bf 2015-05-14T11:43:06Z biological_process owl:Class GO:0010498 biolink:NamedThing proteasomal protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl proteasome-mediated protein catabolism|proteasome-mediated protein catabolic process biological_process owl:Class GO:0015105 biolink:NamedThing arsenite transmembrane transporter activity Enables the transfer of arsenite from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045726 biolink:NamedThing positive regulation of integrin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins. tmpzr1t_l9r_go_relaxed.owl up regulation of integrin biosynthetic process|positive regulation of integrin anabolism|positive regulation of integrin biosynthesis|activation of integrin biosynthetic process|positive regulation of integrin formation|stimulation of integrin biosynthetic process|positive regulation of integrin synthesis|up-regulation of integrin biosynthetic process|upregulation of integrin biosynthetic process biological_process owl:Class GO:0045113 biolink:NamedThing regulation of integrin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins. tmpzr1t_l9r_go_relaxed.owl regulation of integrin anabolism|regulation of integrin biosynthesis|regulation of integrin formation|regulation of integrin synthesis biological_process owl:Class GO:1901165 biolink:NamedThing positive regulation of trophoblast cell migration Any process that activates or increases the frequency, rate or extent of trophoblast cell migration. tmpzr1t_l9r_go_relaxed.owl up regulation of trophoblast cell migration|activation of trophoblast cell migration|up-regulation of trophoblast cell migration|upregulation of trophoblast cell migration vk 2012-07-19T07:53:35Z biological_process owl:Class GO:0004843 biolink:NamedThing thiol-dependent deubiquitinase Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. tmpzr1t_l9r_go_relaxed.owl ubiquitin hydrolase activity|thiol-dependent ubiquitin-specific protease activity|deubiquitinase activity|ubiquitin-specific protease activity|thiol-dependent ubiquitinyl hydrolase activity|deubiquitinase|deubiquitinating enzyme|UCH2|ubiquitinyl hydrolase 1 activity|ubiquitin C-terminal hydrolase|deubiquitylase|ubiquitinyl hydrolase activity|UBP https://github.com/geneontology/go-ontology/issues/19723 Reactome:R-HSA-6807206|EC:3.4.19.12|Reactome:R-HSA-5690080|Reactome:R-HSA-5696968|Reactome:R-HSA-5696564|Reactome:R-HSA-5690196|Reactome:R-HSA-5696465|Reactome:R-HSA-3215295|Reactome:R-HSA-8862184|Reactome:R-HSA-6781764|Reactome:R-HSA-2179291|Reactome:R-HSA-6781814|Reactome:R-HSA-5690157|Reactome:R-HSA-4641236|Reactome:R-HSA-5697009|Reactome:R-HSA-5696960|Reactome:R-HSA-8853503|Reactome:R-HSA-9653514|Reactome:R-HSA-5696914|Reactome:R-HSA-3640872|Reactome:R-HSA-5690759|Reactome:R-HSA-6782069|Reactome:R-HSA-5696627|Reactome:R-HSA-5689972|Reactome:R-HSA-9033478|Reactome:R-HSA-6782820|Reactome:R-HSA-5696958|Reactome:R-HSA-8865182|Reactome:R-HSA-5690152|Reactome:R-HSA-6783177|Reactome:R-HSA-870437|Reactome:R-HSA-8853514|Reactome:R-HSA-8853515|Reactome:R-HSA-5655466|Reactome:R-HSA-1358795|Reactome:R-HSA-5689950|Reactome:R-HSA-8873946|Reactome:R-HSA-6786171|Reactome:R-HSA-5696947|Reactome:R-HSA-9033491|Reactome:R-HSA-5688797|Reactome:R-HSA-5653770|Reactome:R-HSA-8853529|Reactome:R-HSA-5689973|Reactome:R-HSA-3215310|Reactome:R-HSA-5690159|Reactome:R-HSA-6781897|Reactome:R-HSA-5696600|Reactome:R-HSA-8875443|Reactome:R-HSA-6781779|Reactome:R-HSA-5691381|Reactome:R-HSA-5696872|Reactome:R-HSA-5690319|Reactome:R-HSA-6782628|Reactome:R-HSA-5696945|Reactome:R-HSA-5688837|Reactome:R-HSA-8986083|Reactome:R-HSA-8869456|Reactome:R-HSA-5696534|Reactome:R-HSA-6782106|Reactome:R-HSA-6807118|Reactome:R-HSA-5696605|Reactome:R-HSA-5690790|Reactome:R-HSA-5696997 GO:0036459 molecular_function owl:Class GO:0008242 biolink:NamedThing omega peptidase activity Catalysis of the cleavage of non-standard peptide bonds releasing substituted amino acids such as pyroglutamate or cleave isopeptide bonds, such as many deubiquitinating enzymes. tmpzr1t_l9r_go_relaxed.owl peptidase activity, acting on peptides containing modified amino acids EC:3.4.19.- molecular_function owl:Class GO:0031970 biolink:NamedThing organelle envelope lumen The region between the inner and outer lipid bilayers of an organelle envelope. tmpzr1t_l9r_go_relaxed.owl organelle intermembrane space cellular_component owl:Class GO:0070013 biolink:NamedThing intracellular organelle lumen An organelle lumen that is part of an intracellular organelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904326 biolink:NamedThing negative regulation of circadian sleep/wake cycle, wakefulness Any process that stops, prevents or reduces the frequency, rate or extent of circadian sleep/wake cycle, wakefulness. tmpzr1t_l9r_go_relaxed.owl down-regulation of circadian sleep/wake cycle, wakefulness|down regulation of circadian sleep/wake cycle, wakefulness|inhibition of circadian sleep/wake cycle, wakefulness|downregulation of circadian sleep/wake cycle, wakefulness sl 2015-06-10T20:18:45Z biological_process owl:Class GO:0120109 biolink:NamedThing mitotic telomere clustering and tethering at nuclear periphery The process in which the telomeres are gathered together to a small number of foci per chromosome (usually one per chromosome or fewer), and moved to and tethered at the nuclear periphery, as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-01T18:04:37Z biological_process owl:Class GO:0034397 biolink:NamedThing telomere localization Any process in which a telomere is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl telomere localisation biological_process owl:Class GO:0072709 biolink:NamedThing cellular response to sorbitol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sorbitol stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to glucitol mah 2012-04-11T03:41:03Z biological_process owl:Class GO:0071322 biolink:NamedThing cellular response to carbohydrate stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:13:33Z biological_process owl:Class GO:0010463 biolink:NamedThing mesenchymal cell proliferation The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102398 biolink:NamedThing dTDP-3-amino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + dTDP-3-amino-4-dehydro-2,3,6-trideoxy-alpha-D-glucose <=> S-adenosyl-L-homocysteine + dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13657 molecular_function owl:Class GO:1902572 biolink:NamedThing negative regulation of serine-type peptidase activity Any process that stops, prevents or reduces the frequency, rate or extent of serine-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of serine-type peptidase activity|down-regulation of serine-type peptidase activity|down-regulation of serine protease activity|inhibition of serine-type peptidase activity|downregulation of serine-type peptidase activity|downregulation of serine protease activity|inhibition of serine protease activity|down regulation of serine protease activity|negative regulation of serine protease activity krc 2013-12-10T18:17:07Z biological_process owl:Class GO:0043806 biolink:NamedThing keto acid formate lyase activity Catalysis of the reaction: 2-oxobutanoate + CoA = propionyl-CoA + formate. tmpzr1t_l9r_go_relaxed.owl keto-acid formate lyase activity|keto-acid formate acetyltransferase|keto-acid formate-lyase activity MetaCyc:KETOBUTFORMLY-RXN|EC:2.3.1.- molecular_function owl:Class GO:0032009 biolink:NamedThing early phagosome A membrane-bounded intracellular vesicle as initially formed upon the ingestion of particulate material by phagocytosis. tmpzr1t_l9r_go_relaxed.owl early phagocytic vesicle cellular_component owl:Class GO:0045335 biolink:NamedThing phagocytic vesicle A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis. tmpzr1t_l9r_go_relaxed.owl phagosome Wikipedia:Phagosome cellular_component owl:Class GO:0017012 biolink:NamedThing protein-phytochromobilin linkage The linkage of the chromophore phytochromobilin to phycocyanin or allophycocyanin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0133 biological_process owl:Class GO:0017007 biolink:NamedThing protein-bilin linkage The covalent linkage of bilin and a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061075 biolink:NamedThing positive regulation of neural retina development Any process that increases the rate, frequency, or extent of neural retina development, the progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-16T11:59:48Z biological_process owl:Class GO:1905556 biolink:NamedThing ciliary vesicle assembly The aggregation, arrangement and bonding together of a set of components to form a ciliary vesicle. Multiple smaller vesicles dock to the transitional fibers on a mature basal body and then fuse together to form a larger single vesicle. This then fuses with the plasma membrane and forms the ciliary membrane. tmpzr1t_l9r_go_relaxed.owl CV assembly|primary ciliary vesicle assembly|primary ciliary vesicle formation|ciliary vesicle formation|CV formation pr 2016-10-13T09:31:06Z biological_process owl:Class GO:0016050 biolink:NamedThing vesicle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle. tmpzr1t_l9r_go_relaxed.owl vesicle organisation|vesicle organization and biogenesis biological_process owl:Class GO:0015839 biolink:NamedThing cadaverine transport The directed movement of cadaverine, 1,5-pentanediamine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071721 biolink:NamedThing sodium-independent thromboxane transport The directed, sodium-independent, movement of thromboxanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A thromboxane is any of a class of oxygenated oxane derivatives, originally derived from prostaglandin precursors in platelets, that stimulate aggregation of platelets and constriction of blood vessels. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T03:10:45Z biological_process owl:Class GO:0071717 biolink:NamedThing thromboxane transport The directed movement of thromboxanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A thromboxane is any of a class of oxygenated oxane derivatives, originally derived from prostaglandin precursors in platelets, that stimulate aggregation of platelets and constriction of blood vessels. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T03:03:49Z biological_process owl:Class GO:0000296 biolink:NamedThing spermine transport The directed movement of spermine, N,N-bis(3-aminopropyl)-1,4-diaminobutane, a polyamine formed by the transfer of a propylamine group from decarboxylated S-adenosylmethionine to spermidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044503 biolink:NamedThing modulation of G protein-coupled receptor activity in other organism The process in which an organism effects a change in the activity of a G protein-coupled receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl modulation of G-protein coupled receptor activity in other organism jl 2012-02-23T04:20:07Z biological_process owl:Class GO:0006234 biolink:NamedThing TTP biosynthetic process The chemical reactions and pathways resulting in the formation of TTP, ribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl TTP formation|TTP anabolism|TTP synthesis|TTP biosynthesis biological_process owl:Class GO:1901934 biolink:NamedThing bicyclogermacrene biosynthetic process The chemical reactions and pathways resulting in the formation of bicyclogermacrene. tmpzr1t_l9r_go_relaxed.owl bicyclogermacrene biosynthesis|bicyclogermacrene anabolism|bicyclogermacrene formation|bicyclogermacrene synthesis ms 2013-02-18T14:55:01Z biological_process owl:Class GO:0051762 biolink:NamedThing sesquiterpene biosynthetic process The chemical reactions and pathways resulting in the formation of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032344 biolink:NamedThing regulation of aldosterone metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving aldosterone. tmpzr1t_l9r_go_relaxed.owl regulation of aldosterone metabolism biological_process owl:Class GO:0034477 biolink:NamedThing U6 snRNA 3'-end processing Any process involved in forming the mature 3' end of a U6 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl U6 snRNA 3' end processing biological_process owl:Class GO:0034472 biolink:NamedThing snRNA 3'-end processing Any process involved in forming the mature 3' end of an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl snRNA 3' end processing biological_process owl:Class GO:0003330 biolink:NamedThing regulation of extracellular matrix constituent secretion Any process that modulates the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T02:07:40Z biological_process owl:Class GO:1903530 biolink:NamedThing regulation of secretion by cell Any process that modulates the frequency, rate or extent of secretion by cell. tmpzr1t_l9r_go_relaxed.owl regulation of cellular secretion pm 2014-10-08T13:24:59Z biological_process owl:Class GO:0000395 biolink:NamedThing mRNA 5'-splice site recognition Recognition of the intron 5'-splice site by components of the assembling spliceosome. tmpzr1t_l9r_go_relaxed.owl spliceosomal E complex formation|spliceosomal CC complex biosynthesis|U12-type nuclear mRNA 5' splice site recognition|spliceosomal commitment complex formation|nuclear mRNA 5'-splice site recognition|nuclear mRNA 5' splice site recognition|spliceosomal E complex biosynthesis|spliceosomal CC complex formation|U12-type nuclear mRNA 5'-splice site recognition|spliceosomal commitment complex biosynthesis|U2-type nuclear mRNA 5' splice site recognition|U2-type nuclear mRNA 5'-splice site recognition Note that this step represents formation of the Commitment Complex (CC, in yeast) or the E complex (mammalian). GO:0000368|GO:0000369 biological_process owl:Class GO:0006376 biolink:NamedThing mRNA splice site selection Selection of a splice site by components of the assembling spliceosome. tmpzr1t_l9r_go_relaxed.owl spliceosomal E complex biosynthesis|spliceosomal commitment complex biosynthesis|spliceosomal commitment complex formation|spliceosomal E complex formation biological_process owl:Class GO:0072280 biolink:NamedThing establishment of planar polarity involved in metanephric nephron morphogenesis Coordinated organization of groups of cells in the plane of an epithelium that contributes to the shaping of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl establishment of planar cell polarity involved in metanephric nephron morphogenesis mah 2010-04-01T03:17:18Z biological_process owl:Class GO:0015888 biolink:NamedThing thiamine transport The directed movement of thiamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Thiamine is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl vitamin B1 transport|thiamin transport biological_process owl:Class GO:0033482 biolink:NamedThing D-galacturonate biosynthetic process The chemical reactions and pathways resulting in the formation of D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. tmpzr1t_l9r_go_relaxed.owl D-galacturonate synthesis|D-galacturonate formation|D-galacturonate anabolism|D-galacturonate biosynthesis biological_process owl:Class GO:0046396 biolink:NamedThing D-galacturonate metabolic process The chemical reactions and pathways involving D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. D-galacturonic acid is a component of plant gums and bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl D-galacturonate metabolism biological_process owl:Class GO:0034341 biolink:NamedThing response to interferon-gamma Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon-gamma is also known as type II interferon. tmpzr1t_l9r_go_relaxed.owl response to gamma-interferon|response to type II interferon|response to immune interferon|response to type II IFN biological_process owl:Class GO:0034097 biolink:NamedThing response to cytokine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. tmpzr1t_l9r_go_relaxed.owl response to cytokine stimulus biological_process owl:Class GO:1900885 biolink:NamedThing negative regulation of tridecane biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of tridecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of tridecane synthesis|downregulation of tridecane synthesis|down regulation of tridecane anabolism|inhibition of tridecane anabolism|inhibition of tridecane formation|inhibition of tridecane biosynthetic process|negative regulation of tridecane formation|down regulation of tridecane biosynthesis|downregulation of tridecane biosynthetic process|down regulation of tridecane formation|down-regulation of tridecane formation|inhibition of tridecane biosynthesis|down-regulation of tridecane biosynthetic process|down regulation of tridecane synthesis|down regulation of tridecane biosynthetic process|downregulation of tridecane formation|down-regulation of tridecane synthesis|downregulation of tridecane biosynthesis|negative regulation of tridecane biosynthesis|down-regulation of tridecane anabolism|inhibition of tridecane synthesis|down-regulation of tridecane biosynthesis|downregulation of tridecane anabolism|negative regulation of tridecane anabolism tt 2012-06-13T03:00:53Z biological_process owl:Class GO:1900894 biolink:NamedThing negative regulation of tridecane metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tridecane metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of tridecane metabolism|down regulation of tridecane metabolic process|inhibition of tridecane metabolic process|down regulation of tridecane metabolism|downregulation of tridecane metabolism|negative regulation of tridecane metabolism|down-regulation of tridecane metabolism|downregulation of tridecane metabolic process|down-regulation of tridecane metabolic process tt 2012-06-13T03:15:03Z biological_process owl:Class GO:0046160 biolink:NamedThing heme a metabolic process The chemical reactions and pathways involving heme a, a derivative of heme found in cytochrome aa3. tmpzr1t_l9r_go_relaxed.owl heme a metabolism|haem a metabolic process|haem a metabolism biological_process owl:Class GO:0042168 biolink:NamedThing heme metabolic process The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. tmpzr1t_l9r_go_relaxed.owl heme metabolism|haem metabolic process|haem metabolism biological_process owl:Class GO:2000330 biolink:NamedThing positive regulation of T-helper 17 cell lineage commitment Any process that activates or increases the frequency, rate or extent of T-helper 17 cell lineage commitment. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th17 cell lineage commitment|positive regulation of T-helper 17 cell fate commitment|positive regulation of Th17 fate commitment mah 2011-01-19T09:32:16Z biological_process owl:Class GO:2000328 biolink:NamedThing regulation of T-helper 17 cell lineage commitment Any process that modulates the frequency, rate or extent of T-helper 17 cell lineage commitment. tmpzr1t_l9r_go_relaxed.owl regulation of Th17 fate commitment|regulation of Th17 cell lineage commitment|regulation of T-helper 17 cell fate commitment mah 2011-01-19T09:31:19Z biological_process owl:Class GO:0140571 biolink:NamedThing transmembrane ascorbate ferrireductase activity Oxidation of Fe(3+) to Fe(2+) on the outer side of a membrane coupled to the reduction of L-ascorbate to monodehydro-L-ascorbate radical on the inner side of a membrane. Electrons get transferred across the membrane during the reaction. tmpzr1t_l9r_go_relaxed.owl L-ascorbate-cytochrome-b5 reductase activity|L-ascorbate:ferricytochrome-b5 oxidoreductase activity|ascorbate-cytochrome b5 reductase activity EC:7.2.1.3|MetaCyc:1.10.2.1-RXN|RHEA:30403 pg 2020-12-18T16:25:06Z molecular_function owl:Class GO:0015453 biolink:NamedThing oxidoreduction-driven active transmembrane transporter activity Primary active transport of a solute across a membrane, driven by exothermic flow of electrons from a reduced substrate to an oxidized substrate. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source. tmpzr1t_l9r_go_relaxed.owl oxidoreduction-driven transporter TC:3.D molecular_function owl:Class GO:0090291 biolink:NamedThing negative regulation of osteoclast proliferation Any process that decreases the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-18T03:11:03Z biological_process owl:Class GO:0030030 biolink:NamedThing cell projection organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon. tmpzr1t_l9r_go_relaxed.owl cell surface structure organization and biogenesis|cell projection organization and biogenesis|cell projection organisation biological_process owl:Class GO:0071551 biolink:NamedThing RIP homotypic interaction motif binding Binding to a RIP homotypic interaction motif (RHIM) of a protein. The RHIM is a 16-amino-acid motif found in some members, including RIP3, of a family of related kinases. tmpzr1t_l9r_go_relaxed.owl RHIM binding mah 2010-01-13T03:03:51Z molecular_function owl:Class GO:1904113 biolink:NamedThing negative regulation of muscle filament sliding Any process that stops, prevents or reduces the frequency, rate or extent of muscle filament sliding. tmpzr1t_l9r_go_relaxed.owl down-regulation of muscle filament sliding|inhibition of muscle filament sliding|downregulation of muscle filament sliding|down regulation of muscle filament sliding kmv 2015-04-03T18:40:38Z biological_process owl:Class GO:0032971 biolink:NamedThing regulation of muscle filament sliding Any process that modulates the frequency, rate or extent of muscle filament sliding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098994 biolink:NamedThing disruption of host cell envelope during viral entry The disruption of host cell envelope by viral proteins during virus entry. tmpzr1t_l9r_go_relaxed.owl VZ:3938 biological_process owl:Class GO:0098933 biolink:NamedThing disruption by symbiont of host cell envelope The process by which a symbiont breaks down the cell wall of its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046391 biolink:NamedThing 5-phosphoribose 1-diphosphate metabolic process The chemical reactions and pathways involving 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate. tmpzr1t_l9r_go_relaxed.owl 5-phosphoribose 1-diphosphate metabolism|PRPP metabolic process MetaCyc:PRPP-PWY biological_process owl:Class GO:1905551 biolink:NamedThing negative regulation of protein localization to endoplasmic reticulum Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl inhibition of protein localization in ER|down-regulation of protein localization in endoplasmic reticulum|down regulation of protein localization in ER|inhibition of protein localization in endoplasmic reticulum|down-regulation of protein localisation in endoplasmic reticulum|downregulation of protein localization in ER|down regulation of protein localization in endoplasmic reticulum|down regulation of protein localization to endoplasmic reticulum|negative regulation of protein localization in ER|negative regulation of protein localization in endoplasmic reticulum|downregulation of protein localization in endoplasmic reticulum|inhibition of protein localisation in endoplasmic reticulum|down-regulation of protein localization to endoplasmic reticulum|down-regulation of protein localization in ER|downregulation of protein localisation in endoplasmic reticulum|negative regulation of protein localisation in endoplasmic reticulum|inhibition of protein localization to endoplasmic reticulum|downregulation of protein localization to endoplasmic reticulum|down regulation of protein localisation in endoplasmic reticulum rz 2016-10-12T11:37:08Z biological_process owl:Class GO:1905550 biolink:NamedThing regulation of protein localization to endoplasmic reticulum Any process that modulates the frequency, rate or extent of protein localization to endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation in endoplasmic reticulum|regulation of protein localization in endoplasmic reticulum|regulation of protein localization in ER rz 2016-10-12T11:37:01Z biological_process owl:Class GO:0002480 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl TAP-independent exogenous peptide antigen processing and presentation via MHC class I|TAP-independent antigen processing and presentation of exogenous peptide antigen via MHC class I|cross-presentation|cross presentation|exogenous peptide antigen processing and presentation via MHC class I, TAP-independent biological_process owl:Class GO:0042590 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen via MHC class I The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl antigen presentation, exogenous antigen via major histocompatibility complex class I|exogenous peptide antigen processing and presentation via MHC class I|cross priming|cross-priming|cross-presentation|antigen presentation, exogenous antigen via MHC class I|cross presentation biological_process owl:Class GO:1990966 biolink:NamedThing ATP generation from poly-ADP-D-ribose The process of generating ATP in the nucleus from poly-ADP-D-ribose. Nuclear ATP generation is required for extensive chromatin remodeling events that are energy-consuming. tmpzr1t_l9r_go_relaxed.owl sp 2016-06-16T09:41:35Z biological_process owl:Class GO:0035870 biolink:NamedThing dITP diphosphatase activity Catalysis of the reaction: dITP + H2O = dIMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl deoxyinosine triphosphate pyrophosphatase activity|2'-Deoxyinosine-5'-triphosphate pyrophosphohydrolase activity|dITP pyrophosphatase activity RHEA:28342|Reactome:R-HSA-2509838|KEGG_REACTION:R03531|EC:3.6.1.66|MetaCyc:RXN0-1602 bf 2011-05-26T11:32:26Z molecular_function owl:Class GO:2001164 biolink:NamedThing negative regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues Any process that stops, prevents or reduces the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:31:03Z biological_process owl:Class GO:0003092 biolink:NamedThing renal water retention The process in which renal water excretion is decreased. tmpzr1t_l9r_go_relaxed.owl negative regulation of renal water excretion biological_process owl:Class GO:0035811 biolink:NamedThing negative regulation of urine volume Any process that decreases the amount of urine excreted from the body over a unit of time. tmpzr1t_l9r_go_relaxed.owl decrease in urine flow|antidiuresis|reduction of urinary volume bf 2011-04-20T01:21:01Z biological_process owl:Class GO:0001748 biolink:NamedThing insect visual primordium development The process whose specific outcome is the progression of the optic placode over time, from its formation to the mature structure. During embryonic stage 12 the placode starts to invaginate, forming a pouch. Cells that will form Bolwig's organ segregate from the ventral lip of this pouch, remaining in the head epidermis. The remainder of the invagination loses contact with the outer surface and becomes the optic lobe. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl optic lobe and Bolwig's organ precursor development|optic lobe placode development|optic placode development GO:0048049 biological_process owl:Class GO:0097151 biolink:NamedThing positive regulation of inhibitory postsynaptic potential Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl positive regulation of inhibitory post-synaptic membrane potential|positive regulation of IPSP pr 2011-08-12T10:07:45Z biological_process owl:Class GO:0098828 biolink:NamedThing modulation of inhibitory postsynaptic potential Any process that modulates the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl regulation of inhibitory postsynaptic potential biological_process owl:Class GO:0032898 biolink:NamedThing neurotrophin production The appearance of a neurotrophin due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels. A neurotrophin is any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042858 biolink:NamedThing chrysobactin biosynthetic process The chemical reactions and pathways resulting in the formation of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). tmpzr1t_l9r_go_relaxed.owl chrysobactin synthesis|chrysobactin biosynthesis|chrysobactin biosynthetic process, peptide modification|chrysobactin biosynthetic process, peptide formation|chrysobactin formation|chrysobactin anabolism GO:0031184|GO:0031183 biological_process owl:Class GO:0150031 biolink:NamedThing regulation of protein localization to lysosome Any process that modulates the frequency, rate or extent of protein localization to lysosome. tmpzr1t_l9r_go_relaxed.owl bc 2018-02-06T17:07:03Z biological_process owl:Class GO:0060341 biolink:NamedThing regulation of cellular localization Any process that modulates the frequency, rate or extent of a process in which a cell, a substance, or a cellular entity is transported to, or maintained in a specific location within or in the membrane of a cell. tmpzr1t_l9r_go_relaxed.owl regulation of cellular localisation biological_process owl:Class GO:0000813 biolink:NamedThing ESCRT I complex An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes. tmpzr1t_l9r_go_relaxed.owl endosomal sorting complex required for transport cellular_component owl:Class GO:0036452 biolink:NamedThing ESCRT complex An endosomal sorting complex involved in membrane fission processes related to sorting of multivesicular bodies (MVB) in the endocytic pathway, cytokinesis and viral budding among other processes. tmpzr1t_l9r_go_relaxed.owl endosomal sorting complex required for transport Wikipedia:ESCRT bf 2013-11-06T16:25:52Z cellular_component owl:Class GO:1905168 biolink:NamedThing positive regulation of double-strand break repair via homologous recombination Any process that activates or increases the frequency, rate or extent of double-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl positive regulation of Rad51-dependent recombinational repair|activation of homology-directed repair|up-regulation of Rad51-dependent recombinational repair|activation of double-strand break repair via homologous recombination|positive regulation of HRR|positive regulation of homology-directed repair|upregulation of double-strand break repair via homologous recombination|upregulation of Rhp51-dependent recombinational repair|up regulation of homologous recombinational repair|activation of HRR|up-regulation of double-strand break repair via homologous recombination|activation of homologous recombinational repair|up regulation of Rhp51-dependent recombinational repair|activation of Rhp51-dependent recombinational repair|positive regulation of homologous recombinational repair|up regulation of double-strand break repair via homologous recombination|up-regulation of homologous recombinational repair|upregulation of Rad51-dependent recombinational repair|upregulation of homology-directed repair|up-regulation of HRR|upregulation of HDR|activation of Rad51-dependent recombinational repair|upregulation of HRR|positive regulation of HDR|positive regulation of Rhp51-dependent recombinational repair|up-regulation of Rhp51-dependent recombinational repair|up regulation of homology-directed repair|up regulation of Rad51-dependent recombinational repair|up regulation of HDR|up-regulation of HDR|up-regulation of homology-directed repair|up regulation of HRR|activation of HDR|upregulation of homologous recombinational repair mah 2016-04-27T12:48:47Z biological_process owl:Class GO:0010569 biolink:NamedThing regulation of double-strand break repair via homologous recombination Any process that modulates the frequency, rate or extent of the error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071889 biolink:NamedThing 14-3-3 protein binding Binding to a 14-3-3 protein. A 14-3-3 protein is any of a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimers within all eukaryotic cells, and have been implicated in the modulation of distinct biological processes by binding to specific phosphorylated sites on diverse target proteins, thereby forcing conformational changes or influencing interactions between their targets and other molecules. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxy-terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-14T01:21:50Z molecular_function owl:Class GO:1990548 biolink:NamedThing mitochondrial FAD transmembrane transport The process in which FAD is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:04:35Z biological_process owl:Class GO:0032872 biolink:NamedThing regulation of stress-activated MAPK cascade Any process that modulates the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade. tmpzr1t_l9r_go_relaxed.owl regulation of p38 MAPK signaling|regulation of stress-activated MAPKKK signalling pathway|regulation of stress-activated MAPK signalling pathway|regulation of p38 MAPK signalling|regulation of stress-activated MAPKKK cascade|regulation of stress-activated MAPK signaling pathway|regulation of stress-activated MAPKKK signaling pathway biological_process owl:Class GO:0035297 biolink:NamedThing regulation of Malpighian tubule diameter Ensuring that the Malpighian tubule is the correct width. Malpighian tubules have a uniform circumference along their length; the circumference of the tubes is eight cells during the time the cells are dividing, after which the cells rearrange producting tubes with a cirumference of two cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035296 biolink:NamedThing regulation of tube diameter Any process that modulates the diameter of a tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075256 biolink:NamedThing regulation of teliospore formation Any process that modulates the frequency, rate or extent of teliospore formation, which is the formation of a thick-walled resting or over-wintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043943 biolink:NamedThing regulation of asexual sporulation resulting in formation of a cellular spore Any process that modulates the frequency, rate or extent of the formation of a cellular spore derived from the products of mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090407 biolink:NamedThing organophosphate biosynthetic process The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. tmpzr1t_l9r_go_relaxed.owl tb 2011-02-26T02:22:41Z biological_process owl:Class GO:0048581 biolink:NamedThing negative regulation of post-embryonic development Any process that stops, prevents, or reduces the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. tmpzr1t_l9r_go_relaxed.owl down regulation of post-embryonic development|down-regulation of post-embryonic development|inhibition of post-embryonic development|downregulation of post-embryonic development biological_process owl:Class GO:0098655 biolink:NamedThing cation transmembrane transport The process in which a cation is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl ATP hydrolysis coupled cation transmembrane transport GO:0099132 biological_process owl:Class GO:0032802 biolink:NamedThing low-density lipoprotein particle receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a low-density lipoprotein particle receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein receptor catabolic process|LDL receptor degradation|low-density lipoprotein receptor breakdown|LDL receptor catabolism|LDL receptor breakdown|LDL receptor catabolic process|low-density lipoprotein receptor catabolism|low-density lipoprotein receptor degradation biological_process owl:Class GO:0032801 biolink:NamedThing receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl receptor catabolism|receptor breakdown|receptor degradation biological_process owl:Class GO:0032237 biolink:NamedThing activation of store-operated calcium channel activity A process that initiates the activity of an inactive store-operated calcium channel. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901341 biolink:NamedThing positive regulation of store-operated calcium channel activity Any process that activates or increases the frequency, rate or extent of store-operated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl activation of store-operated calcium channel activity|upregulation of store-operated calcium channel activity|up-regulation of store-operated calcium channel activity|up regulation of store-operated calcium channel activity pr 2012-09-03T14:24:38Z biological_process owl:Class GO:1905289 biolink:NamedThing regulation of CAMKK-AMPK signaling cascade Any process that modulates the frequency, rate or extent of CAMKK-AMPK signaling cascade. tmpzr1t_l9r_go_relaxed.owl regulation of stress-activated AMP-activated protein kinase signaling cascade sl 2016-06-23T20:36:55Z biological_process owl:Class GO:0047632 biolink:NamedThing agmatine deiminase activity Catalysis of the reaction: agmatine + H2O = N-carbamoylputrescine + NH3. tmpzr1t_l9r_go_relaxed.owl agmatine iminohydrolase activity|agmatine amidinohydrolase EC:3.5.3.12|MetaCyc:AGMATINE-DEIMINASE-RXN|RHEA:18037 molecular_function owl:Class GO:0016813 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. tmpzr1t_l9r_go_relaxed.owl EC:3.5.3.- molecular_function owl:Class GO:0039611 biolink:NamedThing suppression by virus of host translation initiation factor activity Any process in which a virus prevents or reduces the frequency, rate or extent of activity of a host translation initiation factor. tmpzr1t_l9r_go_relaxed.owl inhibition of activity of host translation initiation factor|inactivation of eIF2 activity|Inhibition of host translation factors by virus|suppression by virus of host EIF-4E activity bf 2012-07-06T10:27:16Z biological_process owl:Class GO:0120179 biolink:NamedThing adherens junction disassembly The disaggregation of an adherens junction into its constituent components. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T17:29:56Z biological_process owl:Class GO:0150147 biolink:NamedThing cell-cell junction disassembly The disaggregation of a cell-cell junction into its constituent components. tmpzr1t_l9r_go_relaxed.owl bc 2019-12-08T11:16:14Z biological_process owl:Class GO:0052790 biolink:NamedThing chitooligosaccharide deacetylase activity Catalysis of the reaction: chitooligosaccharide with N-acetylglucosamine at nonreducing terminal + H2O = chitooligosaccharide with glucosamine at nonreducing terminal + acetate. This reaction is the deacetylation of a chitooligosaccharide at the nonreducing N-acetylglucosamine residue; chitooligosaccharide are composed of (1->4)-linked D-glucosamine (GlcN) and N-acetyl-D-glucosamine (GlcNAc) in varying proportions. tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.- ai 2011-10-04T03:48:35Z molecular_function owl:Class GO:0010106 biolink:NamedThing cellular response to iron ion starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061934 biolink:NamedThing regulation of adenine biosynthetic process Any process that modulates the frequency, rate or extent of an adenine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T14:58:46Z biological_process owl:Class GO:0086043 biolink:NamedThing bundle of His cell action potential An action potential that occurs in a bundle of His cell. tmpzr1t_l9r_go_relaxed.owl bundle of His cardiac muscle cell action potential dph 2011-11-15T12:01:18Z biological_process owl:Class GO:0086001 biolink:NamedThing cardiac muscle cell action potential An action potential that occurs in a cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:45:11Z biological_process owl:Class GO:0070539 biolink:NamedThing linoleic acid binding Binding to linoleic acid, the 18-carbon unsaturated fatty acid (9Z,12Z)-octadeca-9,12-dienoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061128 biolink:NamedThing positive regulation of chemotaxis to cAMP by DIF-2 Any process that increases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-2. DIF-2 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:48:17Z biological_process owl:Class GO:0061124 biolink:NamedThing positive regulation of positive chemotaxis to cAMP by chlorinated alkylphenone Any process that increases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of a chlorinated alkylphenone. An alkylphenone is an aromatic polyketide with methyl and chlorine substitutions. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:33:40Z biological_process owl:Class GO:1904082 biolink:NamedThing pyrimidine nucleobase transmembrane transport The process in which pyrimidine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl tb 2015-03-25T00:13:16Z biological_process owl:Class GO:0015855 biolink:NamedThing pyrimidine nucleobase transport The directed movement of pyrimidine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pyrimidine transport|pyrimidine transmembrane transport|pyrimidine base transport|pyrimidine base transmembrane transport biological_process owl:Class GO:1900259 biolink:NamedThing regulation of RNA-directed 5'-3' RNA polymerase activity Any process that modulates the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ribonucleic synthetase activity|regulation of RDRP|regulation of ribonucleic acid replicase activity|regulation of RNA replicase activity|regulation of RNA-dependent RNA replicase activity|regulation of RNA synthetase activity|regulation of RNA-dependent RNA polymerase activity|regulation of 3D polymerase activity|regulation of RNA nucleotidyltransferase (RNA-directed) activity|regulation of RNA-directed RNA polymerase activity|regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|regulation of Q-beta replicase activity|regulation of polymerase L|regulation of PB1 proteins|regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|regulation of PB2 proteins|regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|regulation of transcriptase|regulation of ribonucleic replicase activity|regulation of phage f2 replicase tb 2012-04-03T11:01:53Z biological_process owl:Class GO:0051338 biolink:NamedThing regulation of transferase activity Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. tmpzr1t_l9r_go_relaxed.owl transferase regulator This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. biological_process owl:Class GO:0010323 biolink:NamedThing negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent). tmpzr1t_l9r_go_relaxed.owl down regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|inhibition of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|down-regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|downregulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway biological_process owl:Class GO:0019212 biolink:NamedThing phosphatase inhibitor activity Binds to and stops, prevents or reduces the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000993 biolink:NamedThing positive regulation of galactomannan catabolic process Any process that activates or increases the frequency, rate or extent of galactomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl tt 2011-08-08T03:16:07Z biological_process owl:Class GO:0006884 biolink:NamedThing cell volume homeostasis Any process involved in maintaining the steady state of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell. tmpzr1t_l9r_go_relaxed.owl regulation of cell volume biological_process owl:Class GO:0019725 biolink:NamedThing cellular homeostasis Any process involved in the maintenance of an internal steady state at the level of the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045337 biolink:NamedThing farnesyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of farnesyl diphosphate. tmpzr1t_l9r_go_relaxed.owl farnesyl diphosphate biosynthesis|farnesyl diphosphate formation|farnesyl diphosphate anabolism|farnesyl diphosphate synthesis MetaCyc:PWY-5123 biological_process owl:Class GO:0008654 biolink:NamedThing phospholipid biosynthetic process The chemical reactions and pathways resulting in the formation of a phospholipid, a lipid containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl phospholipid anabolism|phospholipid formation|phospholipid synthesis|phospholipid biosynthesis MetaCyc:PHOSLIPSYN2-PWY|MetaCyc:PHOSLIPSYN-PWY|MetaCyc:LIPASYN-PWY biological_process owl:Class GO:1902846 biolink:NamedThing positive regulation of mitotic spindle elongation Any process that activates or increases the frequency, rate or extent of mitotic spindle elongation. tmpzr1t_l9r_go_relaxed.owl upregulation of mitotic spindle elongation|up-regulation of mitotic spindle elongation|up regulation of mitotic spindle elongation|positive regulation of spindle elongation during mitosis|upregulation of spindle elongation during mitosis|up-regulation of spindle elongation during mitosis|activation of spindle elongation during mitosis|activation of mitotic spindle elongation|up regulation of spindle elongation during mitosis vw 2014-04-02T08:43:34Z biological_process owl:Class GO:0032888 biolink:NamedThing regulation of mitotic spindle elongation Any process that modulates the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051888 biolink:NamedThing positive regulation of timing of exogen Any process that activates or increases the frequency, rate or extent of timing of exogen, the shedding phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of exogen|up-regulation of exogen|upregulation of exogen|positive regulation of exogen|activation of exogen|up regulation of exogen biological_process owl:Class GO:0048818 biolink:NamedThing positive regulation of hair follicle maturation Any process that activates or increases the frequency, rate or extent of hair follicle maturation. tmpzr1t_l9r_go_relaxed.owl up-regulation of hair follicle maturation|upregulation of hair follicle maturation|activation of hair follicle maturation|stimulation of hair follicle maturation|up regulation of hair follicle maturation biological_process owl:Class GO:1900069 biolink:NamedThing regulation of cellular hyperosmotic salinity response Any process that modulates the frequency, rate or extent of cellular hyperosmotic salinity response. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to hyperosmotic salt stress pr 2012-01-26T02:45:39Z biological_process owl:Class GO:1901000 biolink:NamedThing regulation of response to salt stress Any process that modulates the frequency, rate or extent of response to salt stress. tmpzr1t_l9r_go_relaxed.owl regulation of salinity response|regulation of response to ionic osmotic stress dhl 2012-06-14T05:41:19Z biological_process owl:Class GO:0010753 biolink:NamedThing positive regulation of cGMP-mediated signaling Any process that increases the rate, frequency or extent of cGMP-mediated signaling. cGMP-mediated signaling is a series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl positive regulation of cGMP-mediated signalling biological_process owl:Class GO:0044619 biolink:NamedThing positive regulation of relaxation of uterine smooth muscle in other organism The process in which an organism increases the extent of relaxation of smooth muscle in the uterus of a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T02:51:26Z biological_process owl:Class GO:0044618 biolink:NamedThing modulation of relaxation of uterine smooth muscle in other organism The process in which an organism effects a change in the relaxation of smooth muscle in the uterus of a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of relaxation of uterine smooth muscle in other organism jl 2012-07-04T01:56:04Z biological_process owl:Class GO:0061713 biolink:NamedThing anterior neural tube closure The step in the formation of the neural tube, where the paired anterior neural folds are brought together and fuse at the dorsal midline. tmpzr1t_l9r_go_relaxed.owl dph 2015-06-23T10:13:41Z biological_process owl:Class GO:0060606 biolink:NamedThing tube closure Creation of the central hole of a tube in an anatomical structure by sealing the edges of an epithelial fold. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T09:44:07Z biological_process owl:Class GO:0062042 biolink:NamedThing regulation of cardiac epithelial to mesenchymal transition Any process that modulates the rate, frequency or extent of cardiac epithelial to mesenchymal transition, a transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-10T18:09:31Z biological_process owl:Class GO:0019380 biolink:NamedThing 3-phenylpropionate catabolic process The chemical reactions and pathways resulting in the breakdown of 3-phenylpropionate, the anion of phenylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl 3-phenylpropionate degradation|3-phenylpropionate catabolism|3-phenylpropionate breakdown MetaCyc:P281-PWY|MetaCyc:HCAMHPDEG-PWY biological_process owl:Class GO:0045608 biolink:NamedThing negative regulation of inner ear auditory receptor cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of auditory hair cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of auditory receptor cell differentiation|negative regulation of auditory receptor cell differentiation|negative regulation of auditory hair cell differentiation|inhibition of auditory receptor cell differentiation|down regulation of auditory receptor cell differentiation|downregulation of auditory receptor cell differentiation biological_process owl:Class GO:0045607 biolink:NamedThing regulation of inner ear auditory receptor cell differentiation Any process that modulates the frequency, rate or extent of auditory hair cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of auditory hair cell differentiation|regulation of auditory receptor cell differentiation biological_process owl:Class GO:0061350 biolink:NamedThing planar cell polarity pathway involved in cardiac muscle tissue morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the cardiac muscle tissue. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T10:57:33Z biological_process owl:Class GO:0099187 biolink:NamedThing presynaptic cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures and their associated proteins in the presynaptic cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T15:05:34Z biological_process owl:Class GO:0007010 biolink:NamedThing cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl cytoskeletal organization and biogenesis|cytoskeleton organization and biogenesis|cytoskeleton organisation|cytoskeletal regulator activity biological_process owl:Class GO:0097380 biolink:NamedThing dorsal spinal cord interneuron anterior axon guidance The process in which the migration of an axon growth cone of a dorsal spinal cord interneuron is directed to a specific target site in the anterior direction along the anterior-posterior body axis in response to a combination of attractive and repulsive cues. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. tmpzr1t_l9r_go_relaxed.owl dorsal interneuron rostral axon projection pr 2012-10-01T10:24:41Z biological_process owl:Class GO:0033564 biolink:NamedThing anterior/posterior axon guidance The process in which the migration of an axon growth cone is directed to a specific target site along the anterior-posterior body axis in response to a combination of attractive and repulsive cues. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. tmpzr1t_l9r_go_relaxed.owl anterior/posterior axon pathfinding|anterior-posterior axon guidance biological_process owl:Class GO:2000409 biolink:NamedThing positive regulation of T cell extravasation Any process that activates or increases the frequency, rate or extent of T cell extravasation. tmpzr1t_l9r_go_relaxed.owl positive regulation of T lymphocyte extravasation|positive regulation of T-lymphocyte extravasation|positive regulation of T-cell extravasation mah 2011-02-23T10:52:50Z biological_process owl:Class GO:2000407 biolink:NamedThing regulation of T cell extravasation Any process that modulates the frequency, rate or extent of T cell extravasation. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte extravasation|regulation of T-cell extravasation|regulation of T-lymphocyte extravasation mah 2011-02-23T10:51:58Z biological_process owl:Class GO:0052923 biolink:NamedThing all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity Catalysis of the reaction: geranyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-nonaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl nonaprenyl diphosphate synthase activity|solanesyl diphosphate synthetase activity|solPP synthase activity|SPP-synthase activity|SPP synthase activity|solanesyl-diphosphate synthase activity MetaCyc:TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN|KEGG_REACTION:R09250|RHEA:27563|EC:2.5.1.84 molecular_function owl:Class GO:0003264 biolink:NamedThing regulation of cardioblast proliferation Any process that modulates the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T02:19:37Z biological_process owl:Class GO:2000136 biolink:NamedThing regulation of cell proliferation involved in heart morphogenesis Any process that modulates the frequency, rate or extent of cell proliferation involved in heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T12:43:53Z biological_process owl:Class GO:1903619 biolink:NamedThing negative regulation of transdifferentiation Any process that stops, prevents or reduces the frequency, rate or extent of transdifferentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of transdifferentiation|inhibition of transdifferentiation|downregulation of transdifferentiation|down regulation of transdifferentiation jl 2014-11-19T11:25:05Z biological_process owl:Class GO:0016076 biolink:NamedThing snRNA catabolic process The chemical reactions and pathways resulting in the breakdown of snRNA, small nuclear RNA, low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein. tmpzr1t_l9r_go_relaxed.owl snRNA breakdown|snRNA catabolism|snRNA degradation biological_process owl:Class GO:0016073 biolink:NamedThing snRNA metabolic process The chemical reactions and pathways involving snRNA, small nuclear RNA, any of various low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein. tmpzr1t_l9r_go_relaxed.owl snRNA metabolism biological_process owl:Class GO:0030239 biolink:NamedThing myofibril assembly Formation of myofibrils, the repeating units of striated muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071040 biolink:NamedThing nuclear polyadenylation-dependent antisense transcript catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an antisense transcript, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target antisense transcript. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent antisense transcript catabolic process krc 2009-07-29T01:25:21Z biological_process owl:Class GO:0071046 biolink:NamedThing nuclear polyadenylation-dependent ncRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a noncoding RNA (ncRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target ncRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent ncRNA catabolic process krc 2009-08-06T02:14:53Z biological_process owl:Class GO:1902692 biolink:NamedThing regulation of neuroblast proliferation Any process that modulates the frequency, rate or extent of neuroblast proliferation. tmpzr1t_l9r_go_relaxed.owl rl 2014-02-18T10:03:31Z biological_process owl:Class GO:1900378 biolink:NamedThing positive regulation of secondary metabolite biosynthetic process Any process that activates or increases the frequency, rate or extent of secondary metabolite biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of secondary metabolite biosynthetic process|activation of secondary metabolite biosynthesis|upregulation of secondary metabolite biosynthetic process|up-regulation of secondary metabolite biosynthesis|up regulation of secondary metabolite biosynthesis|positive regulation of secondary metabolite biosynthesis|up-regulation of secondary metabolite biosynthetic process|upregulation of secondary metabolite biosynthesis|up regulation of secondary metabolite biosynthetic process di 2012-04-17T01:55:41Z biological_process owl:Class GO:0017199 biolink:NamedThing N-terminal peptidyl-threonine acetylation The acetylation of the N-terminal threonine of proteins to form the derivative N-acetyl-L-threonine; catalyzed by peptide alpha-N-acetyltransferase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0052 See also the molecular function term 'peptide alpha-N-acetyltransferase activity ; GO:0004596'. biological_process owl:Class GO:0120257 biolink:NamedThing peptidyl-threonine acetylation The acetylation of peptidyl-threonine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19957 krc 2020-09-08T18:01:01Z biological_process owl:Class GO:2000187 biolink:NamedThing positive regulation of phosphate transmembrane transport Any process that activates or increases the frequency, rate or extent of phosphate transmembrane transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of phosphate membrane transport vw 2010-10-15T11:33:10Z biological_process owl:Class GO:1903797 biolink:NamedThing positive regulation of inorganic anion transmembrane transport Any process that activates or increases the frequency, rate or extent of inorganic anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up regulation of inorganic anion membrane transport|upregulation of inorganic anion membrane transport|activation of inorganic anion membrane transport|up regulation of transmembrane inorganic anion transport|up-regulation of inorganic anion transmembrane transport|up-regulation of transmembrane inorganic anion transport|activation of transmembrane inorganic anion transport|positive regulation of transmembrane inorganic anion transport|upregulation of inorganic anion transmembrane transport|positive regulation of inorganic anion membrane transport|activation of inorganic anion transmembrane transport|upregulation of transmembrane inorganic anion transport|up regulation of inorganic anion transmembrane transport|up-regulation of inorganic anion membrane transport sl 2015-01-14T21:45:08Z biological_process owl:Class GO:0015985 biolink:NamedThing energy coupled proton transport, down electrochemical gradient The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that provides energy for the synthesis of ATP or GTP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902600 biolink:NamedThing proton transmembrane transport The directed movement of a proton across a membrane. tmpzr1t_l9r_go_relaxed.owl passive proton transport, down the electrochemical gradient|hydrogen ion transport|hydrogen transport|proton transport|hydrogen ion transmembrane transport|ATP hydrolysis coupled proton transport|hydrogen transmembrane transport pr 2013-12-20T11:08:37Z GO:0015992|GO:0006818|GO:0015991 biological_process owl:Class GO:0019583 biolink:NamedThing galactonate metabolic process The chemical reactions and pathways involving galactonate, the anion of galactonic acid, an organic acid derived from the sugar galactose. tmpzr1t_l9r_go_relaxed.owl galactonate metabolism biological_process owl:Class GO:0019520 biolink:NamedThing aldonic acid metabolic process The chemical reactions and pathways involving aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group. tmpzr1t_l9r_go_relaxed.owl aldonic acid metabolism biological_process owl:Class GO:0035891 biolink:NamedThing exit from host cell The directed movement of an organism out of a cell of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ejection from host cell|host cell exit bf 2011-06-15T02:09:28Z biological_process owl:Class GO:0035890 biolink:NamedThing exit from host The directed movement of an organism out of the body, tissues or cells of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ejection from host bf 2011-06-15T02:08:03Z biological_process owl:Class GO:0050549 biolink:NamedThing cyclohexyl-isocyanide hydratase activity Catalysis of the reaction: N-cyclohexylformamide + H(+) = cyclohexyl isocyanide + H(2)O. tmpzr1t_l9r_go_relaxed.owl N-cyclohexylformamide hydro-lyase (cyclohexyl-isocyanide-forming)|N-cyclohexylformamide hydro-lyase activity|isonitrile hydratase activity EC:4.2.1.103|KEGG_REACTION:R05771|UM-BBD_reactionID:r1029|MetaCyc:4.2.1.103-RXN|RHEA:18197 molecular_function owl:Class GO:0004772 biolink:NamedThing sterol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester. tmpzr1t_l9r_go_relaxed.owl sterol-ester synthetase activity|sterol-ester synthase activity GO:0017066 molecular_function owl:Class GO:1900954 biolink:NamedThing negative regulation of 18-methylnonadec-1-ene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of 18-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of 18-methylnonadec-1-ene metabolism|downregulation of 18-methylnonadec-1-ene metabolism|down regulation of 18-methylnonadec-1-ene metabolic process|downregulation of 18-methylnonadec-1-ene metabolic process|down regulation of 18-methylnonadec-1-ene metabolism|inhibition of 18-methylnonadec-1-ene metabolic process|inhibition of 18-methylnonadec-1-ene metabolism|down-regulation of 18-methylnonadec-1-ene metabolism|down-regulation of 18-methylnonadec-1-ene metabolic process tt 2012-06-14T03:25:37Z biological_process owl:Class GO:1900953 biolink:NamedThing regulation of 18-methylnonadec-1-ene metabolic process Any process that modulates the frequency, rate or extent of 18-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of 18-methylnonadec-1-ene metabolism tt 2012-06-14T03:25:16Z biological_process owl:Class GO:0042341 biolink:NamedThing cyanogenic glycoside metabolic process The chemical reactions and pathways involving cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits. tmpzr1t_l9r_go_relaxed.owl cyanogenic glycoside metabolism biological_process owl:Class GO:0050513 biolink:NamedThing glycoprotein 2-beta-D-xylosyltransferase activity Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + UDP-alpha-D-xylose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-[beta-D-xylosyl-(1->2)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl 1,2-beta-xylosyltransferase activity|beta-1,2-xylosyltransferase activity|glycoprotein 2-b-D-xylosyltransferase activity EC:2.4.2.38|RHEA:10612|KEGG_REACTION:R06016|MetaCyc:2.4.2.38-RXN molecular_function owl:Class GO:0035252 biolink:NamedThing UDP-xylosyltransferase activity Catalysis of the transfer of a xylosyl group from UDP-xylose to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5617138|Reactome:R-HSA-6785668|Reactome:R-HSA-9638090 molecular_function owl:Class GO:0009806 biolink:NamedThing lignan metabolic process The chemical reactions and pathways involving lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist. tmpzr1t_l9r_go_relaxed.owl lignan metabolism biological_process owl:Class GO:0009698 biolink:NamedThing phenylpropanoid metabolic process The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. tmpzr1t_l9r_go_relaxed.owl phenylpropanoid metabolism MetaCyc:PWY1F-467 biological_process owl:Class GO:1903512 biolink:NamedThing phytanic acid metabolic process The chemical reactions and pathways involving phytanic acid. tmpzr1t_l9r_go_relaxed.owl phytanic acid metabolism dph 2014-10-01T22:00:29Z biological_process owl:Class GO:0097089 biolink:NamedThing methyl-branched fatty acid metabolic process The chemical reactions and pathways involving methyl-branched fatty acids, aliphatic monocarboxylic acids with methyl branches on the main chain. tmpzr1t_l9r_go_relaxed.owl methyl-branched fatty acid metabolism pr 2011-07-01T01:06:15Z biological_process owl:Class GO:1902991 biolink:NamedThing regulation of amyloid precursor protein catabolic process Any process that modulates the frequency, rate or extent of amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of APP catabolism|regulation of amyloid precursor protein catabolism|regulation of amyloid precursor protein degradation|regulation of APP catabolic process|regulation of amyloid precursor protein breakdown An example of this is human FKBP1A/12 (UniProt symbol P62942) in PMID:24499793 (inferred from direct assay). rl 2014-05-08T14:21:04Z biological_process owl:Class GO:0018518 biolink:NamedThing 5,6-dihydroxy-3-methyl-2-oxo-1,2,5,6-tetrahydroquinoline dehydrogenase activity Catalysis of the reaction: 5,6-dihydroxy-3-methyl-5,6-dihydroquinolin-2(1H)-one + NAD(+) = 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 5,6-dihydrodiol-3-methyl-2-oxo-1,2-dihydroquinoline dehydrogenase|5,6-dihydroxy-3-methyl-2-oxo-1,2,5,6-tetrahydroquinoline:NAD+ oxidoreductase activity EC:1.3.1.65|RHEA:24556|UM-BBD_reactionID:r0053|KEGG_REACTION:R05312|MetaCyc:RXN-643 molecular_function owl:Class GO:0071243 biolink:NamedThing cellular response to arsenic-containing substance Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. tmpzr1t_l9r_go_relaxed.owl cellular response to arsenic mah 2009-12-03T02:41:05Z biological_process owl:Class GO:0046685 biolink:NamedThing response to arsenic-containing substance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. tmpzr1t_l9r_go_relaxed.owl arsenate sensitivity/resistance|response to arsenic biological_process owl:Class GO:0048884 biolink:NamedThing neuromast development The process whose specific outcome is the progression of the neuromast over time, from its formation to the mature structure. The neuromast is the sensory organ of the lateral line and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromasts are located superficially on the epithelium or in lateral line canals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008704 biolink:NamedThing 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity Catalysis of the reaction: 5-carboxymethyl-2-hydroxymuconate = 5-carboxy-2-oxohept-3-enedioate. tmpzr1t_l9r_go_relaxed.owl CHM isomerase activity|hpaG1|HHDD isomerase activity|hpaG-1|5-carboxymethyl-2-hydroxymuconic acid isomerase activity|5-carboxymethyl-2-hydroxymuconate D-isomerase activity|2-hydroxyhepta-2,4-diene-1,7-dioate isomerase|5-carboxymethyl-2-hydroxymuconate delta2,Delta4-2-oxo,Delta3-isomerase activity RHEA:18813|MetaCyc:5.3.3.10-RXN|EC:5.3.3.10|UM-BBD_reactionID:r0366 GO:0018843 molecular_function owl:Class GO:0016863 biolink:NamedThing intramolecular oxidoreductase activity, transposing C=C bonds Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule, one or more carbon-carbon double bonds in the molecule are rearranged, and no oxidized product appears. tmpzr1t_l9r_go_relaxed.owl intramolecular isomerase activity, transposing C=C bonds EC:5.3.3.- molecular_function owl:Class GO:0009893 biolink:NamedThing positive regulation of metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of organismal metabolism|upregulation of metabolic process|activation of metabolic process|up-regulation of organismal metabolic process|up regulation of metabolic process|stimulation of metabolic process|stimulation of organismal metabolic process|positive regulation of metabolism|up-regulation of metabolic process|positive regulation of multicellular organismal metabolic process GO:0044253 biological_process owl:Class GO:0060414 biolink:NamedThing aorta smooth muscle tissue morphogenesis The process in which the structure of the smooth muscle tissue surrounding the aorta is generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060415 biolink:NamedThing muscle tissue morphogenesis The process in which the anatomical structures of muscle tissue are generated and organized. Muscle tissue consists of a set of cells that are part of an organ and carry out a contractive function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008983 biolink:NamedThing protein-glutamate O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + protein L-glutamate = S-adenosyl-L-homocysteine + protein L-glutamate 5-methyl ester; this reaction is the methylation of peptidyl-L-glutamate to form peptidyl-L-glutamate 5-methyl ester. tmpzr1t_l9r_go_relaxed.owl protein methylase II|S-adenosyl-L-methionine:protein-L-glutamate O-methyltransferase activity|methyl-accepting chemotaxis protein O-methyltransferase activity|S-adenosylmethionine:protein-carboxyl O-methyltransferase activity|protein carboxylmethyltransferase II|protein(carboxyl)methyltransferase activity|protein carboxymethyltransferase activity|protein O-methyltransferase activity|S-adenosylmethionine-glutamyl methyltransferase activity|protein(aspartate)methyltransferase activity|protein carboxyl-O-methyltransferase activity|protein carboxyl-methylase activity|MCP methyltransferase II|protein carboxymethylase activity|MCP methyltransferase I|methyl-accepting chemotaxis protein methyltransferase II RESID:AA0072|EC:2.1.1.80|RHEA:24452|MetaCyc:CHER-RXN molecular_function owl:Class GO:0046704 biolink:NamedThing CDP metabolic process The chemical reactions and pathways involving CDP, cytidine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl CDP metabolism biological_process owl:Class GO:0006723 biolink:NamedThing cuticle hydrocarbon biosynthetic process The chemical reactions and pathways resulting in the formation of hydrocarbons that make up the cuticle, the outer layer of some animals and plants, which acts to prevent water loss. tmpzr1t_l9r_go_relaxed.owl cuticle hydrocarbon synthesis|cuticle hydrocarbon anabolism|cuticle hydrocarbon biosynthesis|cuticle hydrocarbon formation biological_process owl:Class GO:0120251 biolink:NamedThing hydrocarbon biosynthetic process The chemical reactions and pathways resulting in the formation of a hydrocarbon, a compound consisting of carbon and hydrogen only. tmpzr1t_l9r_go_relaxed.owl hydrocarbon formation|hydrocarbon anabolism|hydrocarbon biosynthesis|hydrocarbon synthesis https://github.com/geneontology/go-ontology/issues/19842 krc 2020-09-02T20:35:53Z biological_process owl:Class GO:0102143 biolink:NamedThing carboxynorspermidine dehydrogenase I activity Catalysis of the reaction: carboxynorspermidine + NADP + H2O <=> L-aspartic acid 4-semialdehyde betaine + trimethylenediaminium + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11565|RHEA:34115 molecular_function owl:Class GO:0019689 biolink:NamedThing pyrimidine nucleoside interconversion The chemical reactions and pathways by which a pyrimidine nucleoside is synthesized from another pyrimidine nucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098932 biolink:NamedThing disruption by virus of host cell wall peptidoglycan during virus entry A process carried out by a virus that breaks down peptidoglycans in the cell wall of its host during viral entry. tmpzr1t_l9r_go_relaxed.owl disassembly by virus of host cell wall peptidoglycan|catabolism of host cell wall peptidoglycan by virus|degradation of host cell wall peptidoglycan by virus|degradation of host peptidoglycans during virus entry VZ:3940 biological_process owl:Class GO:1905799 biolink:NamedThing regulation of intraciliary retrograde transport Any process that modulates the frequency, rate or extent of intraciliary retrograde transport. tmpzr1t_l9r_go_relaxed.owl regulation of intraflagellar retrograde transport hbye 2017-01-11T12:58:18Z biological_process owl:Class GO:0032386 biolink:NamedThing regulation of intracellular transport Any process that modulates the frequency, rate or extent of the directed movement of substances within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006471 biolink:NamedThing protein ADP-ribosylation The transfer, from NAD, of ADP-ribose to protein amino acids. tmpzr1t_l9r_go_relaxed.owl protein amino acid ADP-ribosylation RESID:AA0040|RESID:AA0295|RESID:AA0168|RESID:AA0237|RESID:AA0169|RESID:AA0231 biological_process owl:Class GO:0098914 biolink:NamedThing membrane repolarization during atrial cardiac muscle cell action potential The process in which ions are transported across a membrane such that the atrial cardiomyocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl electrocardiogram QRS complex|atrial repolarization biological_process owl:Class GO:0033495 biolink:NamedThing ferulate biosynthetic process The chemical reactions and pathways resulting in the formation of ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl ferulate formation|ferulate biosynthesis|ferulate anabolism|ferulate synthesis MetaCyc:PWY-5168 biological_process owl:Class GO:0071135 biolink:NamedThing alpha7-beta1 integrin-focal adhesion kinase complex A protein complex that consists of an alpha7-beta1 integrin complex bound to focal adhesion kinase. tmpzr1t_l9r_go_relaxed.owl ITGA7-ITGB1-PTK2 complex mah 2009-11-13T02:29:24Z cellular_component owl:Class GO:0102729 biolink:NamedThing 6-oxocampestanol hydroxylase activity Catalysis of the reaction: H+ + 6-oxocampestanol + O2 + NADPH = cathasterone + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-715 molecular_function owl:Class GO:1904388 biolink:NamedThing negative regulation of ncRNA transcription associated with protein coding gene TSS/TES Any process that stops, prevents or reduces the frequency, rate or extent of ncRNA transcription associated with protein coding gene TSS/TES. tmpzr1t_l9r_go_relaxed.owl down-regulation of ncRNA transcription associated with protein coding gene TSS/TES|inhibition of ncRNA transcription associated with protein coding gene TSS/TES|down regulation of ncRNA transcription associated with protein coding gene TSS/TES|down-regulation of pasRNA transcription|negative regulation of pasRNA transcription|inhibition of pasRNA transcription|downregulation of pasRNA transcription|downregulation of ncRNA transcription associated with protein coding gene TSS/TES|down regulation of pasRNA transcription dos 2015-06-23T18:11:39Z biological_process owl:Class GO:0045892 biolink:NamedThing negative regulation of transcription, DNA-templated Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription, DNA-dependent|down regulation of gene-specific transcription|negative regulation of cellular transcription, DNA-dependent|down-regulation of gene-specific transcription|inhibition of transcription, DNA-dependent|downregulation of gene-specific transcription|transcription repressor activity|negative regulation of transcription, DNA-dependent|inhibition of gene-specific transcription|down regulation of transcription, DNA-dependent|negative regulation of gene-specific transcription|down-regulation of transcription, DNA-dependent GO:0032582|GO:0016481|GO:0061021 biological_process owl:Class GO:0003171 biolink:NamedThing atrioventricular valve development The progression of the atrioventricular valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl AV valve development dph 2009-10-08T11:14:21Z biological_process owl:Class GO:0003170 biolink:NamedThing heart valve development The progression of a heart valve over time, from its formation to the mature structure. A heart valve is a structure that restricts the flow of blood to different regions of the heart and forms from an endocardial cushion. tmpzr1t_l9r_go_relaxed.owl cardiac valve development dph 2009-10-08T10:50:09Z biological_process owl:Class GO:0072080 biolink:NamedThing nephron tubule development The progression of a nephron tubule over time, from its initial formation to the mature structure. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:32:12Z biological_process owl:Class GO:1990398 biolink:NamedThing Cus cation efflux complex Transmembrane complex that mediates resistance to copper and silver by cation efflux directly from the cell using the proton-motive force. Spans the inner membrane, periplasm, and outer membrane. Primarily activated under anaerobic conditions by CusR and CusS but also expressed under extreme copper stress, in aerobic growth. tmpzr1t_l9r_go_relaxed.owl copper efflux system|copper efflux complex|Cus cation efflux system|silver efflux system|silver efflux complex An example of this is CusA in E. coli (UniProt symbol P38054) in PMID:23122209. bhm 2014-06-11T08:51:48Z cellular_component owl:Class GO:1904433 biolink:NamedThing negative regulation of ferrous iron binding Any process that stops, prevents or reduces the frequency, rate or extent of ferrous iron binding. tmpzr1t_l9r_go_relaxed.owl inhibition of ferrous iron binding|down-regulation of ferrous iron binding|downregulation of ferrous iron binding|down regulation of ferrous iron binding kom 2015-07-06T13:46:36Z biological_process owl:Class GO:2001197 biolink:NamedThing basement membrane assembly involved in embryonic body morphogenesis Any basement membrane assembly that is involved in embryonic body morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2011-11-03T08:44:33Z biological_process owl:Class GO:0070831 biolink:NamedThing basement membrane assembly The aggregation, arrangement and bonding together of a set of components to form a basement membrane, a part of the extracellular region that consists of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. tmpzr1t_l9r_go_relaxed.owl Note that this term has no relationship to 'membrane assembly ; GO:0071709' because the basement membrane is not a lipid bilayer. mah 2009-07-23T05:01:51Z biological_process owl:Class GO:1902392 biolink:NamedThing regulation of exodeoxyribonuclease activity Any process that modulates the frequency, rate or extent of exodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-11T14:56:14Z biological_process owl:Class GO:1901963 biolink:NamedThing regulation of cell proliferation involved in outflow tract morphogenesis Any process that modulates the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2013-02-20T20:30:26Z biological_process owl:Class GO:0071696 biolink:NamedThing ectodermal placode development The progression of an ectodermal placode over time from its initial formation until its mature state. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T11:48:01Z biological_process owl:Class GO:0006195 biolink:NamedThing purine nucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleotide catabolism|purine nucleotide breakdown|purine nucleotide degradation biological_process owl:Class GO:1900863 biolink:NamedThing positive regulation of cordyol C biosynthetic process Any process that activates or increases the frequency, rate or extent of cordyol C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of cordyol C biosynthetic process|up regulation of cordyol C biosynthetic process|up-regulation of cordyol C biosynthetic process|activation of cordyol C biosynthetic process di 2012-06-07T01:56:46Z biological_process owl:Class GO:0047651 biolink:NamedThing alkylhalidase activity Catalysis of the reaction: bromochloromethane + H(2)O = bromide + chloride + formaldehyde + 2 H(+). tmpzr1t_l9r_go_relaxed.owl alkyl-halide halidohydrolase activity|haloalkane halidohydrolase activity|halogenase activity MetaCyc:ALKYLHALIDASE-RXN|KEGG_REACTION:R03523|RHEA:13765 molecular_function owl:Class GO:0019120 biolink:NamedThing hydrolase activity, acting on acid halide bonds, in C-halide compounds Catalysis of the hydrolysis of any acid halide bond in substances containing halogen atoms in organic linkage. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9011595|EC:3.8.1.- molecular_function owl:Class GO:0046192 biolink:NamedThing anaerobic phenol-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic phenol-containing compound anabolism|anaerobic phenol-containing compound synthesis|anaerobic phenol-containing compound formation|anaerobic phenol-containing compound biosynthesis biological_process owl:Class GO:0042215 biolink:NamedThing anaerobic phenol-containing compound metabolic process The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic phenol-containing compound metabolism UM-BBD_pathwayID:phe biological_process owl:Class GO:0010909 biolink:NamedThing positive regulation of heparan sulfate proteoglycan biosynthetic process Any process that increases the rate, frequency or extent of heparan sulfate proteoglycan biosynthesis. Heparan sulfate proteoglycan biosynthetic processes are the chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan, a glycosaminoglycan with repeat unit consisting of alternating alpha-(1->4)-linked hexuronic acid and glucosamine residues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010908 biolink:NamedThing regulation of heparan sulfate proteoglycan biosynthetic process Any process that modulates the rate, frequency or extent of heparan sulfate proteoglycan biosynthesis. Heparan sulfate proteoglycan biosynthetic processes are the chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan, a glycosaminoglycan with repeat unit consisting of alternating alpha-(1->4)-linked hexuronic acid and glucosamine residues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904364 biolink:NamedThing positive regulation of calcitonin secretion Any process that activates or increases the frequency, rate or extent of calcitonin secretion. tmpzr1t_l9r_go_relaxed.owl up regulation of calcitonin secretion|up-regulation of calcitonin secretion|upregulation of calcitonin secretion|activation of calcitonin secretion sl 2015-06-15T17:55:05Z biological_process owl:Class GO:0090277 biolink:NamedThing positive regulation of peptide hormone secretion Any process that increases the rate, frequency, or extent of the regulated release of a peptide hormone from secretory granules. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:56:39Z biological_process owl:Class GO:0006780 biolink:NamedThing uroporphyrinogen III biosynthetic process The chemical reactions and pathways resulting in the formation of uroporphyrinogen III. tmpzr1t_l9r_go_relaxed.owl uroporphyrinogen III formation|uroporphyrinogen III biosynthesis|uroporphyrinogen III synthesis|uroporphyrinogen III anabolism biological_process owl:Class GO:0006779 biolink:NamedThing porphyrin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. tmpzr1t_l9r_go_relaxed.owl porphyrin synthesis|porphyrin anabolism|porphyrin formation|porphyrin biosynthetic process|porphyrin biosynthesis biological_process owl:Class GO:0000915 biolink:NamedThing actomyosin contractile ring assembly The process of assembly of a ring composed of actin, myosin, and associated proteins that will function in cytokinesis. tmpzr1t_l9r_go_relaxed.owl cytokinesis, actomyosin ring formation|cytokinesis, contractile ring assembly|cytokinesis, actomyosin contractile ring assembly|cytokinesis, actomyosin ring biosynthesis|contractile ring assembly|cytokinesis, actomyosin contractile ring formation|constriction ring assembly GO:0045573 biological_process owl:Class GO:0000912 biolink:NamedThing assembly of actomyosin apparatus involved in cytokinesis The assembly and arrangement of an apparatus composed of actin, myosin, and associated proteins that will function in cytokinesis. tmpzr1t_l9r_go_relaxed.owl actomyosin apparatus assembly involved in cytokinesis|cytokinesis, formation of actomyosin apparatus|formation of actomyosin apparatus involved in cytokinesis biological_process owl:Class GO:0007308 biolink:NamedThing oocyte construction The synthesis, deposition, and organization of the materials in a cell of an ovary; where the cell can then undergo meiosis and form an ovum. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte arrangement GO:0048110 biological_process owl:Class GO:0097502 biolink:NamedThing mannosylation The covalent attachment of a mannose residue to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl pr 2013-09-20T09:47:40Z biological_process owl:Class GO:0070085 biolink:NamedThing glycosylation The covalent attachment and further modification of carbohydrate residues to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Glycosylation biological_process owl:Class GO:0071079 biolink:NamedThing alpha2-beta1 integrin-chondroadherin complex A protein complex that consists of an alpha2-beta1 integrin complex bound to the cartilage matrix protein chondroadherin. tmpzr1t_l9r_go_relaxed.owl ITGA2-ITGB1-CHAD complex mah 2009-11-06T04:42:55Z cellular_component owl:Class GO:0032306 biolink:NamedThing regulation of prostaglandin secretion Any process that modulates the frequency, rate or extent of the regulated release of a prostaglandin from a cell. tmpzr1t_l9r_go_relaxed.owl regulation of prostacyclin secretion biological_process owl:Class GO:0061723 biolink:NamedThing glycophagy The selective autophagy process in which cellular glycogen is delivered to the vacuole and degraded in response to changing cellular conditions. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-08T13:36:51Z biological_process owl:Class GO:0061448 biolink:NamedThing connective tissue development The progression of a connective tissue over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-22T12:53:41Z biological_process owl:Class GO:1903035 biolink:NamedThing negative regulation of response to wounding Any process that stops, prevents or reduces the frequency, rate or extent of response to wounding. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to wounding|down regulation of response to wounding|inhibition of response to wounding|negative regulation of physiological response to wounding|downregulation of physiological response to wounding|inhibition of physiological response to wounding|downregulation of response to wounding|down-regulation of physiological response to wounding|down regulation of physiological response to wounding kmv 2014-05-18T01:28:52Z biological_process owl:Class GO:0008390 biolink:NamedThing testosterone 16-alpha-hydroxylase activity Catalysis of the reaction: testosterone + donor-H2 + O2 = 16-alpha-hydroxytestosterone + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2B9|cytochrome P450 CYP2D9|cytochrome P450 CYP2D11|cytochrome P450 CYP2D10|cytochrome P450 CYP2B10 molecular_function owl:Class GO:0004559 biolink:NamedThing alpha-mannosidase activity Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides. tmpzr1t_l9r_go_relaxed.owl 1,2-alpha-D-mannosidase activity|1,2-alpha-mannosidase|alpha-D-mannoside mannohydrolase activity|exo-alpha-mannosidase activity|alpha-D-mannopyranosidase activity|alpha-D-mannosidase activity|p-nitrophenyl-alpha-mannosidase activity MetaCyc:3.2.1.24-RXN|Reactome:R-HSA-9694656|Reactome:R-HSA-8853686|EC:3.2.1.24|Reactome:R-HSA-6799545 molecular_function owl:Class GO:0015923 biolink:NamedThing mannosidase activity Catalysis of the hydrolysis of mannosyl compounds, substances containing a group derived from a cyclic form of mannose or a mannose derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901009 biolink:NamedThing (S)-scoulerine biosynthetic process The chemical reactions and pathways resulting in the formation of (S)-scoulerine. tmpzr1t_l9r_go_relaxed.owl (S)-scoulerine synthesis|(S)-scoulerine biosynthesis|(S)-scoulerine anabolism|(S)-scoulerine formation yaf 2012-06-15T10:46:17Z biological_process owl:Class GO:0033075 biolink:NamedThing isoquinoline alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin. tmpzr1t_l9r_go_relaxed.owl isoquinoline alkaloid formation|ipecac alkaloid biosynthesis|isoquinoline alkaloid synthesis|isoquinoline alkaloid anabolism|isoquinoline alkaloid biosynthesis biological_process owl:Class GO:0043670 biolink:NamedThing foot layer The inner layer of the ectexine. tmpzr1t_l9r_go_relaxed.owl nexine 1 cellular_component owl:Class GO:0005342 biolink:NamedThing organic acid transmembrane transporter activity Enables the transfer of organic acids from one side of a membrane to the other. Organic acids are acidic compound containing carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002764 biolink:NamedThing immune response-regulating signaling pathway The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately leading to the activation, perpetuation, or inhibition of an immune response. tmpzr1t_l9r_go_relaxed.owl immune response-regulating signalling pathway biological_process owl:Class GO:0050776 biolink:NamedThing regulation of immune response Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042664 biolink:NamedThing negative regulation of endodermal cell fate specification Any process that restricts, stops or prevents a cell from specifying into an endoderm cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of endodermal cell fate specification|down regulation of endodermal cell fate specification|suppression of endoderm cell fate|downregulation of endodermal cell fate specification|negative regulation of endoderm cell fate specification|inhibition of endodermal cell fate specification|suppression of endodermal cell fate biological_process owl:Class GO:1903225 biolink:NamedThing negative regulation of endodermal cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of endodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of endoderm cell differentiation|down regulation of endodermal cell differentiation|downregulation of endodermal cell differentiation|down regulation of endoderm cell differentiation|down-regulation of endodermal cell differentiation|negative regulation of endoderm cell differentiation|inhibition of endodermal cell differentiation|inhibition of endoderm cell differentiation|downregulation of endoderm cell differentiation als 2014-07-29T13:22:41Z biological_process owl:Class GO:1905558 biolink:NamedThing negative regulation of mitotic nuclear envelope disassembly Any process that stops, prevents or reduces the frequency, rate or extent of mitotic nuclear envelope disassembly. tmpzr1t_l9r_go_relaxed.owl down regulation of mitotic nuclear envelope catabolism|downregulation of mitotic nuclear envelope disassembly|downregulation of mitotic nuclear envelope catabolism|inhibition of mitotic nuclear envelope degradation|down regulation of mitotic nuclear envelope degradation|down-regulation of mitotic nuclear envelope breakdown|down regulation of mitotic nuclear envelope disassembly|negative regulation of mitotic nuclear envelope catabolism|negative regulation of mitotic nuclear envelope breakdown|down regulation of mitotic nuclear envelope breakdown|downregulation of mitotic nuclear envelope degradation|down-regulation of mitotic nuclear envelope disassembly|inhibition of mitotic nuclear envelope disassembly|down-regulation of mitotic nuclear envelope degradation|downregulation of mitotic nuclear envelope breakdown|inhibition of mitotic nuclear envelope breakdown|negative regulation of mitotic nuclear envelope degradation|down-regulation of mitotic nuclear envelope catabolism|inhibition of mitotic nuclear envelope catabolism hbye 2016-10-14T13:15:08Z biological_process owl:Class GO:0045341 biolink:NamedThing MHC class I biosynthetic process The chemical reactions and pathways resulting in the formation of major histocompatibility protein class I. tmpzr1t_l9r_go_relaxed.owl MHC class I formation|MHC class I biosynthesis|major histocompatibility complex class I biosynthetic process|MHC class I anabolism|MHC class I synthesis|major histocompatibility complex class I biosynthesis biological_process owl:Class GO:0060201 biolink:NamedThing clathrin-sculpted acetylcholine transport vesicle membrane The lipid bilayer surrounding a clathrin-sculpted acetylcholine transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0030665 biolink:NamedThing clathrin-coated vesicle membrane The lipid bilayer surrounding a clathrin-coated vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin coated vesicle membrane cellular_component owl:Class GO:0050572 biolink:NamedThing L-idonate 5-dehydrogenase activity Catalysis of the reaction: L-idonate + NAD(P)+ = 5-dehydrogluconate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl L-idonate:NAD(P)+ oxidoreductase activity EC:1.1.1.264|MetaCyc:1.1.1.264-RXN molecular_function owl:Class GO:1901365 biolink:NamedThing funalenone catabolic process The chemical reactions and pathways resulting in the breakdown of funalenone. tmpzr1t_l9r_go_relaxed.owl funalenone degradation|funalenone catabolism|funalenone breakdown di 2012-09-17T18:25:29Z biological_process owl:Class GO:1901364 biolink:NamedThing funalenone metabolic process The chemical reactions and pathways involving funalenone. tmpzr1t_l9r_go_relaxed.owl funalenone metabolism di 2012-09-17T18:24:23Z biological_process owl:Class GO:0102146 biolink:NamedThing tricetin O-methytransferase activity Catalysis of the reaction: tricetin + S-adenosyl-L-methionine = H+ + 3'-O-methyltricetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11582|RHEA:27493 molecular_function owl:Class GO:1905771 biolink:NamedThing negative regulation of mesodermal cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of mesodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of mesoderm cell differentiation|inhibition of mesoderm cell differentiation|downregulation of mesoderm cell differentiation|down-regulation of mesodermal cell differentiation|downregulation of mesodermal cell differentiation|down regulation of mesoderm cell differentiation|inhibition of mesodermal cell differentiation|negative regulation of mesoderm cell differentiation|down regulation of mesodermal cell differentiation rph 2016-12-21T12:44:23Z biological_process owl:Class GO:0050807 biolink:NamedThing regulation of synapse organization Any process that modulates the physical form of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell). tmpzr1t_l9r_go_relaxed.owl regulation of synapse structure|regulation of synapse organization and biogenesis|regulation of synapse organisation biological_process owl:Class GO:0051128 biolink:NamedThing regulation of cellular component organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. tmpzr1t_l9r_go_relaxed.owl regulation of cellular component organization and biogenesis|regulation of cellular component organisation|regulation of cell organization|regulation of cell organisation biological_process owl:Class GO:0090154 biolink:NamedThing positive regulation of sphingolipid biosynthetic process Any process that increases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T03:27:33Z biological_process owl:Class GO:0051173 biolink:NamedThing positive regulation of nitrogen compound metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl stimulation of nitrogen metabolic process|positive regulation of nitrogen metabolic process|upregulation of nitrogen metabolic process|positive regulation of nitrogen metabolism|activation of nitrogen metabolic process|up regulation of nitrogen metabolic process|up-regulation of nitrogen metabolic process biological_process owl:Class GO:1901097 biolink:NamedThing negative regulation of autophagosome maturation Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome maturation. tmpzr1t_l9r_go_relaxed.owl negative regulation of fusion of autophagosome with lysosome|negative regulation of autophagic vacuole fusion|downregulation of fusion of autophagosome with lysosome|downregulation of autolysosome formation|downregulation of autophagic vacuole maturation|inhibition of fusion of autophagosome with lysosome|down-regulation of autophagic vacuole maturation|negative regulation of autolysosome formation|down-regulation of fusion of autophagosome with lysosome|inhibition of autolysosome formation|down regulation of autophagic vacuole fusion|negative regulation of autophagosome fusion|down-regulation of amphisome-lysosome fusion|down-regulation of autophagosome maturation|down regulation of autolysosome formation|down regulation of amphisome-lysosome fusion|inhibition of amphisome-lysosome fusion|negative regulation of amphisome-lysosome fusion|downregulation of autophagosome maturation|inhibition of autophagic vacuole fusion|down-regulation of autolysosome formation|downregulation of amphisome-lysosome fusion|down regulation of fusion of autophagosome with lysosome|inhibition of autophagic vacuole maturation|downregulation of autophagic vacuole fusion|inhibition of autophagosome maturation|down regulation of autophagosome maturation|down-regulation of autophagic vacuole fusion|down regulation of autophagic vacuole maturation lb 2012-07-10T07:22:26Z GO:1902453 biological_process owl:Class GO:0016242 biolink:NamedThing negative regulation of macroautophagy Any process that stops, prevents, or reduces the frequency, rate or extent of macroautophagy. tmpzr1t_l9r_go_relaxed.owl down-regulation of macroautophagy|inhibition of macroautophagy|negative regulation of starvation-induced autophagy|downregulation of macroautophagy|down regulation of macroautophagy biological_process owl:Class GO:0005868 biolink:NamedThing cytoplasmic dynein complex Any dynein complex with a homodimeric dynein heavy chain core that catalyzes movement along a microtubule. Cytoplasmic dynein complexes participate in many cytoplasmic transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Some complexes participate in intraflagellar transport. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes, and may include light chains and light intermediate chains. tmpzr1t_l9r_go_relaxed.owl cytoplasmic dynein intermediate chain|cytoplasmic dynein intermediate light chain|cytoplasmic dynein heavy chain|cytoplasmic dynein light chain Note that this term is labelled based on phylogenetic classification and community usage, rather than strict cellular localization. Cytoplasmic dynein complexes may contain ciliary dyneins; therefore the term is not linked to 'cytoplasm'. Cytoplasmic dynein complexes do not contain axonemal dyneins; see GO:0005858 axonemal dynein complex. cellular_component owl:Class GO:0007285 biolink:NamedThing primary spermatocyte growth The phase of growth and gene expression that male germ cells undergo as they enter the spermatocyte stage. The cells grow in volume and transcribe most of the gene products needed for the morphological events that follow meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900998 biolink:NamedThing nitrobenzene catabolic process The chemical reactions and pathways resulting in the breakdown of nitrobenzene. tmpzr1t_l9r_go_relaxed.owl nitrobenzene catabolism|nitrobenzene breakdown|nitrobenzene degradation yaf 2012-06-14T02:54:09Z biological_process owl:Class GO:1990762 biolink:NamedThing cytoplasmic alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase involved in cytoplasmic translation. tmpzr1t_l9r_go_relaxed.owl vw 2015-06-08T15:56:51Z biological_process owl:Class GO:0006419 biolink:NamedThing alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. The alanyl-tRNA synthetase is a class-II synthetases. The activated amino acid is transferred to the 3'-OH group of an alanine accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102569 biolink:NamedThing FR-33289 synthase activity Catalysis of the reaction: FR-900098 + 2-oxoglutarate(2-) + O2 <=> FR-33289 + succinate(2-) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15082 molecular_function owl:Class GO:1901844 biolink:NamedThing regulation of cell communication by electrical coupling involved in cardiac conduction Any process that modulates the frequency, rate or extent of cell communication by electrical coupling involved in cardiac conduction. tmpzr1t_l9r_go_relaxed.owl rl 2013-01-24T19:15:39Z biological_process owl:Class GO:0010649 biolink:NamedThing regulation of cell communication by electrical coupling Any process that modulates the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033929 biolink:NamedThing blood-group-substance endo-1,4-beta-galactosidase activity Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in blood group A and B substances. tmpzr1t_l9r_go_relaxed.owl blood-group-substance 1,4-beta-D-galactanohydrolase activity|endo-beta-galactosidase activity MetaCyc:3.2.1.102-RXN|EC:3.2.1.102 molecular_function owl:Class GO:0015925 biolink:NamedThing galactosidase activity Catalysis of the hydrolysis of galactosyl compounds, substances containing a group derived from a cyclic form of galactose or a galactose derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052827 biolink:NamedThing inositol pentakisphosphate phosphatase activity Catalysis of the reaction: myo-inositol pentakisphosphate + H2O = myo-inositol tetrakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-11-29T09:55:04Z molecular_function owl:Class GO:0052745 biolink:NamedThing inositol phosphate phosphatase activity Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-14T01:50:04Z molecular_function owl:Class GO:0052651 biolink:NamedThing monoacylglycerol catabolic process The chemical reactions and pathways resulting in the breakdown of monoacylglycerol, any ester of glycerol in which any one of its hydroxyl groups has been acylated with a fatty acid, the other being non-esterified. tmpzr1t_l9r_go_relaxed.owl monoacylglycerol breakdown|monoacylglycerol catabolism|monoacylglycerol degradation 2010-09-23T09:26:36Z biological_process owl:Class GO:0046462 biolink:NamedThing monoacylglycerol metabolic process The chemical reactions and pathways involving monoacylglycerol, any ester of glycerol in which any one of its hydroxyl groups has been acylated with a fatty acid, the other being non-esterified. tmpzr1t_l9r_go_relaxed.owl monoacylglycerol metabolism|monoglyceride metabolic process|monoglyceride metabolism biological_process owl:Class GO:0043066 biolink:NamedThing negative regulation of apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of apoptosis|inhibition of apoptosis|pro-survival|apoptosis inhibitor activity|down regulation of apoptosis|negative regulation of apoptosis|anti-apoptosis|downregulation of apoptosis This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is negatively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. GO:0006916 biological_process owl:Class GO:1905479 biolink:NamedThing negative regulation of glutamate-ammonia ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of glutamate-ammonia ligase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of glutamine synthetase activity|downregulation of glutamylhydroxamic synthetase activity|down-regulation of L-glutamine synthetase activity|inhibition of glutamylhydroxamic synthetase activity|downregulation of L-glutamate:ammonia ligase (ADP-forming)|inhibition of glutamine synthetase activity|down regulation of L-glutamine synthetase activity|inhibition of L-glutamate:ammonia ligase (ADP-forming)|down-regulation of glutamylhydroxamic synthetase activity|down regulation of L-glutamate:ammonia ligase (ADP-forming)|down regulation of glutamine synthetase activity|inhibition of glutamate-ammonia ligase activity|downregulation of glutamate-ammonia ligase activity|inhibition of L-glutamine synthetase activity|negative regulation of glutamylhydroxamic synthetase activity|down-regulation of L-glutamate:ammonia ligase (ADP-forming)|downregulation of L-glutamine synthetase activity|negative regulation of L-glutamate:ammonia ligase (ADP-forming)|down-regulation of glutamate-ammonia ligase activity|down regulation of glutamate-ammonia ligase activity|down regulation of glutamylhydroxamic synthetase activity|negative regulation of glutamine synthetase activity|down-regulation of glutamine synthetase activity|negative regulation of L-glutamine synthetase activity pga 2016-09-22T09:58:42Z biological_process owl:Class GO:0060726 biolink:NamedThing regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway Any process that modulates the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Neu/ErbB-2 receptor activity|regulation of coreceptor activity involved in epidermal growth factor receptor signalling pathway dph 2009-06-12T01:25:20Z biological_process owl:Class GO:0001877 biolink:NamedThing lipoarabinomannan immune receptor activity Combining with lipoarabinomannan and transmitting the signal to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl LAM receptor activity|lipoarabinomannan receptor activity molecular_function owl:Class GO:0038187 biolink:NamedThing pattern recognition receptor activity Combining with a pathogen-associated molecular pattern (PAMP), a structure conserved among microbial species to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl PAMP receptor activity|signaling pattern recognition receptor activity|macrophage receptor activity|microbe-associated molecular pattern receptor activity|PRR activity|pathogen associated molecular pattern receptor activity|MAMP receptor activity|PRR https://github.com/geneontology/go-ontology/issues/17995|https://github.com/geneontology/go-ontology/issues/18588 Wikipedia:Pattern_recognition_receptor bf 2013-05-29T15:24:44Z GO:0008329 molecular_function owl:Class GO:0042003 biolink:NamedThing masculinization of hermaphrodite soma Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma. An example of this is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042001 biolink:NamedThing hermaphrodite somatic sex determination The determination of sex and sexual phenotypes in a hermaphroditic organism's soma. An example of this is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl GO:0042002 biological_process owl:Class GO:0010948 biolink:NamedThing negative regulation of cell cycle process Any process that decreases the rate, frequency or extent of a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T09:53:22Z biological_process owl:Class GO:1904935 biolink:NamedThing positive regulation of cell proliferation in midbrain Any process that activates or increases the frequency, rate or extent of cell proliferation in midbrain. tmpzr1t_l9r_go_relaxed.owl up regulation of mesencepahalic cell proliferation|positive regulation of cell proliferation in mesencephalon|up regulation of cell proliferation in midbrain|up-regulation of cell proliferation in mesencephalon|up-regulation of cell proliferation in midbrain|up regulation of cell proliferation in mesencephalon|upregulation of mesencepahalic cell proliferation|activation of mesencepahalic cell proliferation|activation of cell proliferation in mesencephalon|positive regulation of mesencepahalic cell proliferation|activation of cell proliferation in midbrain|up-regulation of mesencepahalic cell proliferation|upregulation of cell proliferation in mesencephalon|upregulation of cell proliferation in midbrain bf 2016-02-01T13:16:27Z biological_process owl:Class GO:2000179 biolink:NamedThing positive regulation of neural precursor cell proliferation Any process that activates or increases the frequency, rate or extent of neural precursor cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T12:40:45Z biological_process owl:Class GO:0018340 biolink:NamedThing peptidyl-O-(sn-1-glycerophosphoryl)-L-serine biosynthetic process from peptidyl-serine The modification of peptidyl-serine to peptidyl-O-(sn-1-glycerophosphoryl)-L-serine. tmpzr1t_l9r_go_relaxed.owl peptidyl-O-(sn-1-glycerophosphoryl)-L-serine formation from peptidyl-serine|peptidyl-O-(sn-1-glycerophosphoryl)-L-serine synthesis from peptidyl-serine|peptidyl-O-(sn-1-glycerophosphoryl)-L-serine anabolism from peptidyl-serine RESID:AA0264 biological_process owl:Class GO:0098976 biolink:NamedThing excitatory chemical synaptic transmission Synaptic transmission that results in an excitatory postsynaptic potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007268 biolink:NamedThing chemical synaptic transmission The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl signal transmission across a synapse|synaptic transmission|neurotransmission Wikipedia:Neurotransmission biological_process owl:Class GO:0052704 biolink:NamedThing ergothioneine biosynthesis from histidine via gamma-glutamyl-hercynylcysteine sulfoxide The pathway resulting in the formation of ergothioneine from histidine via a set of steps in which gamma-glutamyl-hercynylcysteine sulfoxide is formed as an intermediate. tmpzr1t_l9r_go_relaxed.owl ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine https://github.com/geneontology/go-ontology/issues/11163 Wikipedia:Ergothioneine 2011-08-05T11:31:52Z biological_process owl:Class GO:0052699 biolink:NamedThing ergothioneine biosynthetic process The chemical reactions and pathways resulting in the formation of ergothioneine, a naturally occurring metabolite of histidine with antioxidant properties. tmpzr1t_l9r_go_relaxed.owl ergothioneine biosynthesis|2-mercaptoergothioneine trimethylbetaine synthesis|2-mercaptoergothioneine trimethylbetaine biosynthetic process|2-mercaptoergothioneine trimethylbetaine biosynthesis|2-mercaptoergothioneine trimethylbetaine anabolism|2-mercaptoergothioneine trimethylbetaine formation|(2S)-3-(2-mercapto-1H-imidazol-5-yl)-2-(trimethylazaniumyl)propanoate biosynthetic process|ergothioneine anabolism|ergothioneine synthesis|ergothioneine formation ai 2011-08-01T03:56:19Z biological_process owl:Class GO:0061149 biolink:NamedThing BMP signaling pathway involved in ureter morphogenesis A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the shaping of the ureter. The ureter is a tube that extends from the kidney to the bladder. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in ureter morphogenesis dph 2010-06-02T09:11:46Z biological_process owl:Class GO:0106064 biolink:NamedThing regulation of cobalamin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. tmpzr1t_l9r_go_relaxed.owl hjd 2017-10-27T17:33:05Z biological_process owl:Class GO:1901401 biolink:NamedThing regulation of tetrapyrrole metabolic process Any process that modulates the frequency, rate or extent of tetrapyrrole metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tetrapyrrole metabolism tt 2012-10-01T14:34:03Z biological_process owl:Class GO:0006094 biolink:NamedThing gluconeogenesis The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. tmpzr1t_l9r_go_relaxed.owl glucose biosynthesis|glucose biosynthetic process MetaCyc:GLUCONEO-PWY|Wikipedia:Gluconeogenesis biological_process owl:Class GO:0006006 biolink:NamedThing glucose metabolic process The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. tmpzr1t_l9r_go_relaxed.owl glucose metabolism|cellular glucose metabolic process biological_process owl:Class GO:0018915 biolink:NamedThing ethylbenzene metabolic process The chemical reactions and pathways involving ethylbenzene (phenylethane), a benzene derivative with an ethyl group attached to the ring. It is a colorless liquid with a pungent odor used as a solvent and as a component of automotive and aviation fuels. tmpzr1t_l9r_go_relaxed.owl ethylbenzene metabolism UM-BBD_pathwayID:ethb2 biological_process owl:Class GO:0120252 biolink:NamedThing hydrocarbon metabolic process The chemical reactions and pathways involving a hydrocarbon, a compound consisting of carbon and hydrogen only. tmpzr1t_l9r_go_relaxed.owl hydrocarbon metabolism https://github.com/geneontology/go-ontology/issues/19842 krc 2020-09-02T20:47:28Z biological_process owl:Class GO:0031493 biolink:NamedThing nucleosomal histone binding Binding to a histone that is assembled into a nucleosome. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042393 biolink:NamedThing histone binding Binding to a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. tmpzr1t_l9r_go_relaxed.owl histone-specific chaperone activity molecular_function owl:Class GO:0009112 biolink:NamedThing nucleobase metabolic process The chemical reactions and pathways involving a nucleobase, a nitrogenous base that is a constituent of a nucleic acid, e.g. the purines: adenine, guanine, hypoxanthine, xanthine and the pyrimidines: cytosine, uracil, thymine. tmpzr1t_l9r_go_relaxed.owl nucleobase metabolism biological_process owl:Class GO:1905769 biolink:NamedThing positive regulation of double-stranded telomeric DNA binding Any process that activates or increases the frequency, rate or extent of double-stranded telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl activation of double-stranded telomeric DNA binding|upregulation of double-stranded telomeric DNA binding|up-regulation of double-stranded telomeric DNA binding|up regulation of double-stranded telomeric DNA binding nc 2016-12-20T15:34:15Z biological_process owl:Class GO:1905767 biolink:NamedThing regulation of double-stranded telomeric DNA binding Any process that modulates the frequency, rate or extent of double-stranded telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl nc 2016-12-20T15:33:58Z biological_process owl:Class GO:1903269 biolink:NamedThing ornithine carbamoyltransferase inhibitor complex A protein complex which is capable of ornithine carbamoyltransferase inhibitor activity. tmpzr1t_l9r_go_relaxed.owl OTC-ARGI complex|ornithine carbamoyltransferase arginase complex An example of this is ARGI in Saccharomyces cerevisiae (P00812) in PMID:12679340 (inferred from direct assay). bhm 2014-08-08T08:47:38Z cellular_component owl:Class GO:0033746 biolink:NamedThing histone H3-methyl-arginine-2 demethylase activity Catalysis of the removal of the methyl group from a modified arginine residue at position 2 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone demethylase activity (H3-R2 specific)|histone H3R2me demethylase activity https://github.com/geneontology/go-ontology/issues/21089 molecular_function owl:Class GO:0032452 biolink:NamedThing histone demethylase activity Catalysis of the removal of a methyl group from a histone. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-3214912|Reactome:R-HSA-5625797|Reactome:R-HSA-4724284|Reactome:R-HSA-5661120|Reactome:R-HSA-5661125|Reactome:R-HSA-5661115|Reactome:R-HSA-4754181|Reactome:R-HSA-5625848|Reactome:R-HSA-5661124|Reactome:R-HSA-5423117|Reactome:R-HSA-5661116|Reactome:R-HSA-5661123|Reactome:R-HSA-4724279|Reactome:R-HSA-5625870|Reactome:R-HSA-5661122|Reactome:R-HSA-4754176|Reactome:R-HSA-4754187|Reactome:R-HSA-4722133|Reactome:R-HSA-5661121|Reactome:R-HSA-5661114 molecular_function owl:Class GO:1904876 biolink:NamedThing negative regulation of DNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA ligase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA ligase activity|down-regulation of DNA ligase activity|downregulation of DNA ligase activity|down regulation of DNA ligase activity rl 2015-12-18T18:35:37Z biological_process owl:Class GO:0033986 biolink:NamedThing response to methanol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methanol stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097305 biolink:NamedThing response to alcohol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to alcohol pr 2012-05-15T03:48:45Z GO:1990335 biological_process owl:Class GO:0061064 biolink:NamedThing negative regulation of nematode larval development Any process that decreases the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T01:04:39Z biological_process owl:Class GO:0061062 biolink:NamedThing regulation of nematode larval development Any process that modulates the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T12:59:21Z biological_process owl:Class GO:1903604 biolink:NamedThing cytochrome metabolic process The chemical reactions and pathways involving a cytochrome. tmpzr1t_l9r_go_relaxed.owl cytochrome metabolism dph 2014-11-13T20:01:09Z biological_process owl:Class GO:0021939 biolink:NamedThing extracellular matrix-granule cell signaling involved in regulation of granule cell precursor proliferation The process that mediates the transfer of information from the extracellular matrix to granule cell precursors resulting in a decrease in rate of granule cell precursor cell proliferation. tmpzr1t_l9r_go_relaxed.owl extracellular matrix-granule cell signalling involved in regulation of granule cell precursor proliferation biological_process owl:Class GO:0009221 biolink:NamedThing pyrimidine deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleotide synthesis|pyrimidine deoxyribonucleotide anabolism|pyrimidine deoxyribonucleotide formation|pyrimidine deoxyribonucleotide biosynthesis MetaCyc:PWY0-166 biological_process owl:Class GO:0009265 biolink:NamedThing 2'-deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyribonucleotide formation|2'-deoxyribonucleotide biosynthesis|2'-deoxyribonucleotide anabolism|2'-deoxyribonucleotide synthesis biological_process owl:Class GO:0097287 biolink:NamedThing 7-cyano-7-deazaguanine metabolic process The chemical reactions and pathways involving the Q nucleoside precursor 7-cyano-7-deazaguanine, also known as 2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile or preQo. tmpzr1t_l9r_go_relaxed.owl 7-cyano-7-deazaguanine metabolism pr 2012-04-25T10:50:50Z biological_process owl:Class GO:0010162 biolink:NamedThing seed dormancy process A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. tmpzr1t_l9r_go_relaxed.owl seed dormancy Wikipedia:Seed#Seed_dormancy_and_protection biological_process owl:Class GO:0022611 biolink:NamedThing dormancy process A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. tmpzr1t_l9r_go_relaxed.owl multicellular organism dormancy process|spore dormancy process In plants and animals, dormancy may be a response to environmental conditions such as seasonality or extreme heat, drought, or cold. In plants, dormancy may involve the formation of dormant buds, and may be preceded by the senescence of plant parts such as leaves in woody plants or most of the shoot system in herbaceous perennials. The exit from dormancy in vascular plants is marked by resumed growth of buds and/or growth of vascular cambium. biological_process owl:Class GO:0023056 biolink:NamedThing positive regulation of signaling Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. tmpzr1t_l9r_go_relaxed.owl positive regulation of signalling process|positive regulation of signaling process 2010-02-16T09:30:50Z biological_process owl:Class GO:0036077 biolink:NamedThing intratendonous ossification Ossification wherein bone tissue forms within tendonous tissue. tmpzr1t_l9r_go_relaxed.owl Tendonous ossification may occur via replacement ossification or metaplastic ossification or both in any one instance. bf 2011-12-19T01:57:48Z biological_process owl:Class GO:0140598 biolink:NamedThing lipoprotein carrier activity Binding to and carrying a lipoprotein between two different cellular locations by moving along with the target lipoprotein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15917 pg 2021-02-10T06:16:26Z molecular_function owl:Class GO:0140597 biolink:NamedThing protein carrier chaperone Binding to and carrying a protein between two different cellular components by moving along with the target protein. tmpzr1t_l9r_go_relaxed.owl protein chaperone|protein carrier activity https://github.com/geneontology/go-ontology/issues/15917|https://github.com/geneontology/go-ontology/issues/22127|https://github.com/geneontology/go-ontology/issues/22356 pg 2021-02-10T06:16:16Z molecular_function owl:Class GO:0007095 biolink:NamedThing mitotic G2 DNA damage checkpoint signaling A mitotic cell cycle checkpoint that detects and negatively regulates progression through the G2/M transition of the cell cycle in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl negative regulation of signal transduction involved in mitotic G2 DNA damage checkpoint|positive regulation of signal transduction involved in mitotic G2/M transition DNA damage checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|G2 DNA damage checkpoint|down-regulation of signal transduction involved in mitotic G2 DNA damage checkpoint|signal transduction involved in G2/M transition DNA damage checkpoint|positive regulation of signal transduction involved in mitotic G2 DNA damage checkpoint|down-regulation of signal transduction involved in mitotic G2/M transition DNA damage checkpoint|mitotic G2 DNA damage checkpoint|G2/M transition DNA damage checkpoint|signal transduction involved in mitotic G2/M transition DNA damage checkpoint|down regulation of signal transduction involved in mitotic G2/M transition DNA damage checkpoint|down regulation of signal transduction involved in mitotic G2 DNA damage checkpoint|regulation of signal transduction involved in mitotic G2 DNA damage checkpoint|negative regulation of signal transduction involved in mitotic G2/M transition DNA damage checkpoint|regulation of signal transduction involved in mitotic G2/M transition DNA damage checkpoint|signal transduction involved in G2 DNA damage checkpoint|signal transduction involved in mitotic G2 DNA damage checkpoint|inhibition of signal transduction involved in mitotic G2 DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0031572|GO:1902505|GO:1902506|GO:1902504|GO:0072425|GO:0072434 biological_process owl:Class GO:0044773 biolink:NamedThing mitotic DNA damage checkpoint signaling A signal transduction process involved in mitotic DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl intracellular signaling cascade involved in mitotic DNA damage checkpoint|intracellular signaling pathway involved in mitotic DNA damage checkpoint|intracellular signal transduction pathway involved in mitotic DNA damage checkpoint|signal transduction involved in mitotic DNA damage checkpoint|mitotic DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2013-02-28T15:55:25Z GO:1902402 biological_process owl:Class GO:0061501 biolink:NamedThing 2',3'-cyclic GMP-AMP synthase activity Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic G-P(2'-5')A-P(3'-5') (cyclic 2',3' GAMP). tmpzr1t_l9r_go_relaxed.owl cyclic 2',3' GAMP synthase activity|2',3' cyclic GMP-AMP synthase activity|2',3' cyclic-GMP-AMP synthase activity|cyclic-GMP-AMP synthase activity https://github.com/geneontology/go-ontology/issues/21980 Reactome:R-HSA-3244614|EC:2.7.7.86|RHEA:42064 dph 2013-01-04T07:17:57Z molecular_function owl:Class GO:0140699 biolink:NamedThing cyclic GMP-AMP synthase activity Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic GMP-AMP. tmpzr1t_l9r_go_relaxed.owl cyclic-GMP-AMP synthase activity https://github.com/geneontology/go-ontology/issues/21980 Note that this term should not be used for direct annotation. It should be possible to annotate to a more specific child term that descibes the position of the phosphate group on the cGAMP molecule. pg 2021-08-27T05:05:37Z molecular_function owl:Class GO:0016095 biolink:NamedThing polyprenol catabolic process The chemical reactions and pathways resulting in the breakdown of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. tmpzr1t_l9r_go_relaxed.owl polyprenol breakdown|polyprenol degradation|polyprenol catabolism biological_process owl:Class GO:0008300 biolink:NamedThing isoprenoid catabolic process The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. tmpzr1t_l9r_go_relaxed.owl isoprenoid catabolism|polyterpene catabolism|polyisoprenoid catabolic process|polyisoprenoid breakdown|polyisoprenoid catabolism|polyterpene catabolic process|isoprenoid degradation|polyisoprenoid degradation|isoprenoid breakdown GO:0016097 biological_process owl:Class GO:1900557 biolink:NamedThing emericellamide biosynthetic process The chemical reactions and pathways resulting in the formation of emericellamide. tmpzr1t_l9r_go_relaxed.owl emericellamide anabolism|emericellamide formation|emericellamide biosynthesis|emericellamide synthesis di 2012-05-15T01:33:31Z biological_process owl:Class GO:0050763 biolink:NamedThing depsipeptide biosynthetic process The chemical reactions and pathways resulting in the formation of depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively. tmpzr1t_l9r_go_relaxed.owl depsipeptide anabolism|depsipeptide biosynthesis|depsipeptide formation|depsipeptide synthesis biological_process owl:Class GO:0033590 biolink:NamedThing response to cobalamin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalamin (vitamin B12) stimulus. tmpzr1t_l9r_go_relaxed.owl response to vitamin B12 biological_process owl:Class GO:0032922 biolink:NamedThing circadian regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl diurnal variation of protein expression|circadian regulation of protein expression|diurnal variation of gene expression biological_process owl:Class GO:0007623 biolink:NamedThing circadian rhythm Any biological process in an organism that recurs with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl response to circadian rhythm|circadian process|circadian response Wikipedia:Circadian_rhythm GO:0050895 biological_process owl:Class GO:0047834 biolink:NamedThing D-threo-aldose 1-dehydrogenase activity Catalysis of the reaction: a D-threo-aldose + NAD+ = a D-threo-aldono-1,5-lactone + NADH. tmpzr1t_l9r_go_relaxed.owl (2S,3R)-aldose dehydrogenase activity|L-fucose dehydrogenase activity|dehydrogenase, L-fucose|D-threo-aldose:NAD+ 1-oxidoreductase activity|L-fucose (D-arabinose) dehydrogenase activity RHEA:19645|MetaCyc:D-THREO-ALDOSE-1-DEHYDROGENASE-RXN|EC:1.1.1.122 molecular_function owl:Class GO:0100010 biolink:NamedThing positive regulation of fever generation by prostaglandin biosynthetic process Any prostaglandin biosynthetic process process that positively_regulates fever generation. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0100008 biolink:NamedThing regulation of fever generation by prostaglandin biosynthetic process Any prostaglandin biosynthetic process process that regulates fever generation. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:1902493 biolink:NamedThing acetyltransferase complex A protein complex which is capable of acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-13T16:16:45Z cellular_component owl:Class GO:1990234 biolink:NamedThing transferase complex A protein complex capable of catalyzing the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-12T13:20:12Z cellular_component owl:Class GO:0090151 biolink:NamedThing establishment of protein localization to mitochondrial membrane The directed movement of a protein to a specific location in the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization in mitochondrial membrane|establishment of protein localisation in mitochondrial membrane tb 2009-12-08T03:18:51Z biological_process owl:Class GO:0007006 biolink:NamedThing mitochondrial membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrial membrane, either of the lipid bilayer surrounding a mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial membrane organisation|mitochondrial membrane organization and biogenesis biological_process owl:Class GO:0010454 biolink:NamedThing negative regulation of cell fate commitment Any process that stops, prevents or reduces the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010453 biolink:NamedThing regulation of cell fate commitment Any process that modulates the frequency, rate or extent of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018667 biolink:NamedThing cyclohexanone monooxygenase activity Catalysis of the reaction: cyclohexanone + NADPH + H+ + O2 = 6-hexanolide + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cyclohexanone:NADPH:oxygen oxidoreductase (6-hydroxylating, 1,2-lactonizing) activity|cyclohexanone 1,2-monooxygenase activity|cyclohexanone oxygenase activity|cyclohexanone:NADPH:oxygen oxidoreductase (lactone-forming) MetaCyc:CYCLOHEXANONE-MONOOXYGENASE-RXN|RHEA:24068|UM-BBD_reactionID:r0166|EC:1.14.13.22 molecular_function owl:Class GO:2000986 biolink:NamedThing negative regulation of behavioral fear response Any process that stops, prevents or reduces the frequency, rate or extent of behavioral fear response. tmpzr1t_l9r_go_relaxed.owl negative regulation of behavioural fear response yaf 2011-08-08T09:16:34Z biological_process owl:Class GO:0097120 biolink:NamedThing receptor localization to synapse Any process in which a receptor is transported to, and/or maintained at the synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell. tmpzr1t_l9r_go_relaxed.owl receptor localisation to synapse pr 2011-07-31T09:20:30Z biological_process owl:Class GO:0140209 biolink:NamedThing zinc ion import into endoplasmic reticulum The directed import of zinc(2+) from the cytosol, across the endoplasmic reticulum membrane, into the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl zinc ion import across endoplasmic reticulum|zinc(2+) import into endoplasmic reticulum|zinc(2+) import across endoplasmic reticulum|zinc ion import into ER This term covers zinc(2+) import *across* the endoplasmic reticulum membrane through a channel or pore. It does not cover import via vesicle fusion with endoplasmic reticulum membrane, as in this case transport does not involve crossing the membrane. pg 2018-03-19T10:40:01Z biological_process owl:Class GO:0062111 biolink:NamedThing zinc ion import into organelle The directed import of zinc(2+) from the cytosol, across an organelle membrane, into the organelle. tmpzr1t_l9r_go_relaxed.owl dph 2019-02-05T15:27:38Z biological_process owl:Class GO:0110131 biolink:NamedThing Aim21-Tda2 complex A complex that localizes to actin cortical patches at sites of endocytosis and negatively regulates barbed end F-actin assembly, resulting in the generation of free actin pools. The Aim21-Tda2 complex is necessary for efficient endocytosis and balancing the distribution of actin between patches and cables. tmpzr1t_l9r_go_relaxed.owl Aim21/Tda2 complex kmv 2018-10-09T21:08:36Z cellular_component owl:Class GO:0030276 biolink:NamedThing clathrin binding Binding to a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003434 biolink:NamedThing BMP signaling pathway involved in growth plate cartilage chondrocyte development A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the progression of a growth plate cartilage chondrocyte over time. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in growth plate cartilage chondrocyte development dph 2009-12-22T12:50:17Z biological_process owl:Class GO:0034164 biolink:NamedThing negative regulation of toll-like receptor 9 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 9 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 9 signalling pathway|negative regulation of TLR9 signaling pathway biological_process owl:Class GO:2001307 biolink:NamedThing xanthone-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a xanthone-containing compound. tmpzr1t_l9r_go_relaxed.owl xanthones biosynthetic process|xanthone biosynthetic process|xanthone-containing compound formation|xanthone biosynthesis|xanthones formation|xanthone-containing compound anabolism|xanthone-containing compound synthesis|xanthone-containing compound biosynthesis|xanthones biosynthesis|xanthones synthesis|xanthones anabolism bf 2012-03-14T10:35:44Z biological_process owl:Class GO:2001305 biolink:NamedThing xanthone-containing compound metabolic process The chemical reactions and pathways involving a xanthone-containing compound. tmpzr1t_l9r_go_relaxed.owl xanthone metabolism|xanthones metabolism|xanthone-containing compound metabolism|xanthones metabolic process bf 2012-03-14T10:35:38Z biological_process owl:Class GO:1901601 biolink:NamedThing strigolactone biosynthetic process The chemical reactions and pathways resulting in the formation of strigolactone. tmpzr1t_l9r_go_relaxed.owl strigolactone biosynthesis|strigolactone synthesis|strigolactone anabolism|strigolactone formation tb 2012-11-08T01:20:13Z biological_process owl:Class GO:1901600 biolink:NamedThing strigolactone metabolic process The chemical reactions and pathways involving strigolactone. tmpzr1t_l9r_go_relaxed.owl strigolactone metabolism tb 2012-11-08T01:20:09Z biological_process owl:Class GO:1901624 biolink:NamedThing negative regulation of lymphocyte chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of lymphocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphocyte chemotaxis|inhibition of lymphocyte chemotaxis|down-regulation of lymphocyte chemotaxis|down regulation of lymphocyte chemotaxis tb 2012-11-13T23:03:28Z biological_process owl:Class GO:2000402 biolink:NamedThing negative regulation of lymphocyte migration Any process that stops, prevents or reduces the frequency, rate or extent of lymphocyte migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T10:45:47Z biological_process owl:Class GO:1903978 biolink:NamedThing regulation of microglial cell activation Any process that modulates the frequency, rate or extent of microglial cell activation. tmpzr1t_l9r_go_relaxed.owl nc 2015-03-02T15:17:33Z biological_process owl:Class GO:1900597 biolink:NamedThing demethylkotanin metabolic process The chemical reactions and pathways involving demethylkotanin. tmpzr1t_l9r_go_relaxed.owl demethylkotanin metabolism di 2012-05-15T06:54:52Z biological_process owl:Class GO:0035771 biolink:NamedThing interleukin-4-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-4 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-4-mediated signaling pathway|interleukin-4-mediated signalling pathway bf 2011-04-01T10:56:46Z biological_process owl:Class GO:0046250 biolink:NamedThing limonene biosynthetic process The chemical reactions and pathways resulting in the formation of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene. tmpzr1t_l9r_go_relaxed.owl limonene formation|limonene synthesis|limonene biosynthesis|limonene anabolism biological_process owl:Class GO:1900674 biolink:NamedThing olefin biosynthetic process The chemical reactions and pathways resulting in the formation of olefin. tmpzr1t_l9r_go_relaxed.owl olefin biosynthesis|olefin anabolism|olefin formation|olefin synthesis tt 2012-05-22T04:25:03Z biological_process owl:Class GO:0019589 biolink:NamedThing anaerobic glycerol catabolic process to propane-1,3-diol The anaerobic chemical reactions and pathways resulting in the breakdown of glycerol into propane-1,3-diol and water. tmpzr1t_l9r_go_relaxed.owl glycerol fermentation to 1,3-propanediol|glycerol fermentation to propane-1,3-diol MetaCyc:GOLPDLCAT-PWY biological_process owl:Class GO:0051143 biolink:NamedThing propanediol metabolic process The chemical reactions and pathways involving propanediol, CH3-CHOH-CH2OH, a sweet, colorless, viscous, hygroscopic liquid used as an antifreeze, in brake fluid and as a humectant in cosmetics and personal care items. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydroxypropane metabolic process|propanediol metabolism|propylene glycol metabolic process|1,2-dihydroxypropane metabolism|propylene glycol metabolism biological_process owl:Class GO:0052062 biolink:NamedThing induction by symbiont of host phytoalexin production The activation by a symbiont of the production of phytoalexins as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of host phytoalexin production|induction by organism of phytoalexin production in other organism involved in symbiotic interaction GO:0052262 biological_process owl:Class GO:0052559 biolink:NamedThing induction by symbiont of host immune response Any process in which a symbiont activates the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host immune response|induction by organism of immune response of other organism involved in symbiotic interaction|upregulation by symbiont of host immune response|stimulation by symbiont of host immune response|activation by symbiont of host immune response|up-regulation by symbiont of host immune response|positive regulation by organism of immune response of other organism involved in symbiotic interaction|up regulation by symbiont of host immune response GO:0052556|GO:0052555|GO:0052558 biological_process owl:Class GO:0097207 biolink:NamedThing bud dormancy process A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a bud. Bud dormancy is a suspension of most physiological activity and growth that can be reactivated. It may be a response to environmental conditions such as seasonality or extreme heat, drought, or cold. The exit from bud dormancy is marked by the resumed growth of the bud. tmpzr1t_l9r_go_relaxed.owl bud dormancy Bud dormancy may precede dormancy of the whole plant. pr 2012-01-04T01:18:24Z biological_process owl:Class GO:1903444 biolink:NamedThing negative regulation of brown fat cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of brown fat cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of brown adipocyte cell differentiation|downregulation of brown adipocyte cell differentiation|inhibition of brown adipocyte differentiation|inhibition of brown fat cell differentiation|negative regulation of brown adipocyte cell differentiation|down-regulation of brown fat cell differentiation|downregulation of brown fat cell differentiation|down-regulation of brown adipocyte cell differentiation|down regulation of brown fat cell differentiation|down regulation of brown adipocyte cell differentiation|down-regulation of brown adipocyte differentiation|down regulation of brown adipocyte differentiation|negative regulation of brown adipocyte differentiation|downregulation of brown adipocyte differentiation hjd 2014-09-17T19:15:00Z biological_process owl:Class GO:0090335 biolink:NamedThing regulation of brown fat cell differentiation Any process that modulates the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:16:57Z biological_process owl:Class GO:0055116 biolink:NamedThing entry into reproductive diapause The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055115 biolink:NamedThing entry into diapause The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Diapause biological_process owl:Class GO:0043386 biolink:NamedThing mycotoxin biosynthetic process The chemical reactions and pathways resulting in the formation of a mycotoxin, any poisonous substance produced by a fungus. tmpzr1t_l9r_go_relaxed.owl mycotoxin biosynthesis|mycotoxin anabolism|mycotoxin formation|mycotoxin synthesis biological_process owl:Class GO:0043385 biolink:NamedThing mycotoxin metabolic process The chemical reactions and pathways involving a mycotoxin, any poisonous substance produced by a fungus. tmpzr1t_l9r_go_relaxed.owl mycotoxin metabolism biological_process owl:Class GO:1900604 biolink:NamedThing tensidol A catabolic process The chemical reactions and pathways resulting in the breakdown of tensidol A. tmpzr1t_l9r_go_relaxed.owl tensidol A catabolism|tensidol A degradation|tensidol A breakdown di 2012-05-15T06:58:09Z biological_process owl:Class GO:0008990 biolink:NamedThing rRNA (guanine-N2-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N2-methylguanine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:rRNA (guanine-2-N-)-methyltransferase activity|S-adenosyl-L-methionine:rRNA (guanine-N2-)-methyltransferase activity|ribosomal ribonucleate guanine-2-methyltransferase activity EC:2.1.1.52|MetaCyc:RRNA-GUANINE-N2--METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0008170 biolink:NamedThing N-methyltransferase activity Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.- molecular_function owl:Class GO:0070051 biolink:NamedThing fibrinogen binding Binding to fibrinogen, a highly soluble hexameric glycoprotein complex that is found in blood plasma and is converted to fibrin by thrombin in the coagulation cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044877 biolink:NamedThing protein-containing complex binding Binding to a macromolecular complex. tmpzr1t_l9r_go_relaxed.owl macromolecular complex binding|protein complex binding jl 2014-12-16T11:38:58Z GO:0032403 molecular_function owl:Class GO:0032197 biolink:NamedThing transposition, RNA-mediated Any process involved in a type of transpositional recombination which occurs via an RNA intermediate. tmpzr1t_l9r_go_relaxed.owl retrotransposon transposition|Ty element transposition|Ty2 element transposition|Ty3 element transposition|Tf transposition|RNA-mediated transposition|retrotransposition|Ty1 element transposition|Class I transposition Wikipedia:Transposon##Class_I:_Retrotransposons GO:0006322|GO:0006320|GO:0006321|GO:0006319 biological_process owl:Class GO:0032196 biolink:NamedThing transposition Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Transposon biological_process owl:Class GO:0036396 biolink:NamedThing RNA N6-methyladenosine methyltransferase complex A RNA methyltransferase complex that catalyzes the post-transcriptional methylation of adenosine to form N6-methyladenosine (m6A). In budding yeast, the MIS complex consists of Mum2p, Ime4p and Slz1p. In vertebrates, the complex consists of METTL3, METTL14 and associated components WTAP, ZC3H13, VIRMA, CBLL1/HAKAI and in some cases of RBM15 (RBM15 or RBM15B). tmpzr1t_l9r_go_relaxed.owl m(6)A writer complex|m6A methyltransferase complex|MIS complex|METTL3-METTL14-WTAP methyltransferase complex|WMM complex|Mum2, Ime4, and Slz1 complex bf 2013-07-15T10:17:50Z cellular_component owl:Class GO:0045293 biolink:NamedThing mRNA editing complex A protein complex that posttranscriptionally catalyzes insertion, deletion or substitution of nucleotides at multiple sites within nascent mRNA transcripts to produce mature mRNAs in eukaryotes. tmpzr1t_l9r_go_relaxed.owl editosome cellular_component owl:Class GO:2000957 biolink:NamedThing regulation of cyclodextrin catabolic process Any process that modulates the frequency, rate or extent of cyclodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cyclodextrin catabolism tt 2011-08-01T02:23:55Z biological_process owl:Class GO:0034689 biolink:NamedThing integrin alphaX-beta2 complex An integrin complex that comprises one alphaX subunit and one beta2 subunit. tmpzr1t_l9r_go_relaxed.owl alphaX-beta2 integrin complex|Itgax-Itgb2 complex cellular_component owl:Class GO:0008305 biolink:NamedThing integrin complex A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands. tmpzr1t_l9r_go_relaxed.owl laminin receptor protein cellular_component owl:Class GO:0000166 biolink:NamedThing nucleotide binding Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097637 biolink:NamedThing integral component of autophagosome membrane The component of the autophagosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole integral membrane protein|integral component of autophagic vacuole membrane|integral to autophagic vacuole membrane cellular_component owl:Class GO:0051904 biolink:NamedThing pigment granule transport The directed movement of pigment granules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pigment granule translocation biological_process owl:Class GO:0051875 biolink:NamedThing pigment granule localization Any process in which a pigment granule is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl pigment granule localisation biological_process owl:Class GO:0034012 biolink:NamedThing FAD-AMP lyase (cyclizing) activity Catalysis of the reaction: FAD = AMP + riboflavin cyclic-4',5'-phosphate. tmpzr1t_l9r_go_relaxed.owl FMN cyclase activity|FAD AMP-lyase (riboflavin-cyclic-4',5'-phosphate-forming) activity|FAD AMP-lyase (cyclic-FMN-forming) activity EC:4.6.1.15|RHEA:13729 molecular_function owl:Class GO:0009975 biolink:NamedThing cyclase activity Catalysis of a ring closure reaction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048010 biolink:NamedThing vascular endothelial growth factor receptor signaling pathway Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor (VEGFR) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGF receptor signaling pathway|VEGF receptor signalling pathway|VEGFR signaling pathway In GO, a gene product with 'vascular endothelial growth factor-activated receptor activity ; GO:0005021' necessarily binds VEGF to transduce a signal. In contrast, the VEGFR refers to PR:000001971. To represent cross-talk between ligands and receptors, signaling pathways in GO are starting to be named after the receptor and/or the signal. GO:0048010 is for annotation of any pathway in which a ligand (VEGF or an alternative growth factor) binds and activates a VEGFR (PR:000001971). For annotation of signaling pathways where a VEGF binds to a cell surface receptor (VEGFR, PDGFR etc.), consider 'vascular endothelial growth factor signaling pathway ; GO:0038084'. biological_process owl:Class GO:0007169 biolink:NamedThing transmembrane receptor protein tyrosine kinase signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase signalling pathway biological_process owl:Class GO:0075246 biolink:NamedThing negative regulation of oospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of oospore formation, a process in which male and female gametangia develop and fuse to form a thick-walled resting spore of oomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043942 biolink:NamedThing negative regulation of sexual sporulation resulting in formation of a cellular spore Any process that stops, prevents, or reduces the frequency, rate or extent of the formation of cellular spores derived from the products of meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903060 biolink:NamedThing negative regulation of protein lipidation Any process that stops, prevents or reduces the frequency, rate or extent of protein lipidation. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein amino acid lipidation|inhibition of protein lipidation|inhibition of protein amino acid lipidation|down regulation of protein lipidation|negative regulation of lipid:protein modification|downregulation of protein amino acid lipidation|down-regulation of lipid:protein modification|downregulation of lipid:protein modification|down regulation of protein amino acid lipidation|downregulation of protein lipidation|negative regulation of protein amino acid lipidation|inhibition of lipid:protein modification|down regulation of lipid:protein modification|down-regulation of protein lipidation rph 2014-05-28T13:21:25Z biological_process owl:Class GO:0071077 biolink:NamedThing adenosine 3',5'-bisphosphate transmembrane transporter activity Enables the transfer of adenosine 3',5'-bisphosphate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl adenosine 3',5'-diphosphate transporter activity|adenosine 3'-phosphate-5'-phosphate transmembrane transporter activity mah 2009-11-06T03:44:14Z molecular_function owl:Class GO:0005346 biolink:NamedThing purine ribonucleotide transmembrane transporter activity Enables the transfer of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030977 biolink:NamedThing taurine binding Binding to taurine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043210 biolink:NamedThing alkanesulfonate binding Binding to alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000940 biolink:NamedThing outer kinetochore The region of a kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions. tmpzr1t_l9r_go_relaxed.owl condensed chromosome outer kinetochore|outer kinetochore of condensed nuclear chromosome|condensed nuclear chromosome outer kinetochore|outer kinetochore of condensed chromosome|outer kinetochore plate https://github.com/geneontology/go-ontology/issues/21126 GO:0000942 cellular_component owl:Class GO:0043058 biolink:NamedThing regulation of backward locomotion Any process that modulates the speed, mechanical force, or rhythm of the posterior movement of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904752 biolink:NamedThing regulation of vascular associated smooth muscle cell migration Any process that modulates the frequency, rate or extent of vascular associated smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle cell migration rph 2015-10-19T15:49:52Z biological_process owl:Class GO:0043400 biolink:NamedThing cortisol secretion The regulated release of cortisol, a steroid hormone that in humans is the major circulating hormone of the cortex, or outer layer, of the adrenal gland. tmpzr1t_l9r_go_relaxed.owl hydrocortisone secretion biological_process owl:Class GO:0035933 biolink:NamedThing glucocorticoid secretion The regulated release of any glucocorticoid hormone into the circulatory system. Glucocorticoids are a class of steroid hormones that regulate a variety of physiological processes, in particular control of the concentration of glucose in blood. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:08:37Z biological_process owl:Class GO:2000081 biolink:NamedThing positive regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway modulating the rate or frequency of pancreatic B cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of canonical Wnt receptor signalling pathway involved in controlling type B pancreatic cell proliferation|positive regulation of canonical Wnt-activated signaling pathway involved in controlling type B pancreatic cell proliferation|positive regulation of canonical Wnt receptor signalling pathway involved in controlling pancreatic B cell proliferation|positive regulation of canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation|positive regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|positive regulation of canonical Wnt receptor signaling pathway involved in controlling pancreatic B cell proliferation tb 2010-08-27T11:23:00Z biological_process owl:Class GO:2000079 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway modulating the rate or frequency of pancreatic B cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|regulation of canonical Wnt receptor signalling pathway involved in controlling type B pancreatic cell proliferation|regulation of canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation|regulation of canonical Wnt receptor signalling pathway involved in controlling pancreatic B cell proliferation|regulation of canonical Wnt-activated signaling pathway involved in controlling type B pancreatic cell proliferation|regulation of canonical Wnt receptor signaling pathway involved in controlling pancreatic B cell proliferation tb 2010-08-27T11:22:56Z biological_process owl:Class GO:0047957 biolink:NamedThing 4'-methoxyisoflavone 2'-hydroxylase activity Catalysis of the reaction: formononetin + NADPH + O2 = 2'-hydroxyformononetin + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl formononetin,NADPH:oxygen oxidoreductase (2'-hydroxylating)|isoflavone 2'-monooxygenase activity MetaCyc:ISOFLAVONE-2-HYDROXYLASE-RXN|EC:1.14.14.89|RHEA:12388 molecular_function owl:Class GO:0014051 biolink:NamedThing gamma-aminobutyric acid secretion The regulated release of gamma-aminobutyric acid by a cell or a tissue. The gamma-aminobutyric acid is the principal inhibitory neurotransmitter in the brain but is also found in several extraneural tissues. tmpzr1t_l9r_go_relaxed.owl GABA secretion biological_process owl:Class GO:0080170 biolink:NamedThing hydrogen peroxide transmembrane transport The process in which hydrogen peroxide is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. dhl 2010-09-23T05:12:14Z biological_process owl:Class GO:0055085 biolink:NamedThing transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl membrane transport|ATP hydrolysis coupled transmembrane transport Transmembrane transport is the transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. Note also that this term is not intended for use in annotating lateral movement within membranes. tb 2015-10-21T13:22:47Z GO:0090662 biological_process owl:Class GO:0018355 biolink:NamedThing protein-phosphoribosyl dephospho-coenzyme A linkage via O-(phosphoribosyl dephospho-coenzyme A)-L-serine The formation of a protein-phosphoribosyl dephospho-coenzyme A linkage via O-(phosphoribosyl dephospho-coenzyme A)-L-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015827 biolink:NamedThing tryptophan transport The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-tryptophan transport biological_process owl:Class GO:0046942 biolink:NamedThing carboxylic acid transport The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035733 biolink:NamedThing hepatic stellate cell activation A change in the morphology or behavior of a hepatic stellate cell resulting from exposure to a cytokine, chemokine, hormone, cellular ligand or soluble factor. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-11T10:04:12Z biological_process owl:Class GO:0072537 biolink:NamedThing fibroblast activation A change in the morphology or behavior of a fibroblast resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-14T04:35:08Z biological_process owl:Class GO:2001226 biolink:NamedThing negative regulation of chloride transport Any process that stops, prevents or reduces the frequency, rate or extent of chloride transport. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-18T05:46:03Z biological_process owl:Class GO:1903792 biolink:NamedThing negative regulation of anion transport Any process that stops, prevents or reduces the frequency, rate or extent of anion transport. tmpzr1t_l9r_go_relaxed.owl downregulation of anion transport|inhibition of anion transport|down regulation of anion transport|down-regulation of anion transport sl 2015-01-12T21:50:20Z biological_process owl:Class GO:0003105 biolink:NamedThing negative regulation of glomerular filtration Any process that stops, prevents, or reduces the frequency, rate or extent of glomerular filtration. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048281 biolink:NamedThing inflorescence morphogenesis The process in which the anatomical structures of inflorescences are generated and organized. An inflorescence is the part of a seed plant body that is usually above ground and that can bear flowers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033797 biolink:NamedThing selenate reductase activity Catalysis of the reaction: 2 e(-) + 2 H(+) + selenate = H(2)O + selenite. tmpzr1t_l9r_go_relaxed.owl selenite:reduced acceptor oxidoreductase activity EC:1.97.1.9|RHEA:14029|UM-BBD_reactionID:r0828|KEGG_REACTION:R07229|MetaCyc:RXN0-2101 molecular_function owl:Class GO:0061235 biolink:NamedThing mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis The process in which an organism retains a population of mesenchymal stem cells that contributes to the shaping of a nephron in the mesonephros. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:57:11Z biological_process owl:Class GO:0072038 biolink:NamedThing mesenchymal stem cell maintenance involved in nephron morphogenesis The process in which an organism retains a population of mesenchymal stem cells that contributes to the shaping of a nephron. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:08:05Z biological_process owl:Class GO:1905873 biolink:NamedThing positive regulation of protein localization to cell leading edge Any process that activates or increases the frequency, rate or extent of protein localization to cell leading edge. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localisation to cell leading edge|up regulation of protein localisation in cell leading edge|upregulation of protein localization to cell leading edge|positive regulation of protein localization in cell leading edge|positive regulation of protein localisation to cell leading edge|positive regulation of protein localisation in cell leading edge|up-regulation of protein localization in cell leading edge|activation of protein localisation to cell leading edge|upregulation of protein localisation in cell leading edge|up regulation of protein localization to cell leading edge|up regulation of protein localization in cell leading edge|up-regulation of protein localization to cell leading edge|activation of protein localization in cell leading edge|upregulation of protein localization in cell leading edge|activation of protein localisation in cell leading edge|upregulation of protein localisation to cell leading edge|up-regulation of protein localisation in cell leading edge|activation of protein localization to cell leading edge|up regulation of protein localisation to cell leading edge sl 2017-01-27T19:35:13Z biological_process owl:Class GO:1903829 biolink:NamedThing positive regulation of protein localization Any process that activates or increases the frequency, rate or extent of a protein localization. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular protein localisation|upregulation of cellular protein localization|up regulation of cellular protein localization|up regulation of cellular protein localisation|positive regulation of cellular protein localization|up-regulation of cellular protein localization|up-regulation of cellular protein localisation|upregulation of cellular protein localisation https://github.com/geneontology/go-ontology/issues/22021 jl 2015-01-20T14:32:33Z biological_process owl:Class GO:0003319 biolink:NamedThing cardioblast migration to the midline involved in heart rudiment formation The orderly movement of a cardioblast toward the midline that contributes to the initial appearance of the heart rudiment. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-27T09:21:36Z biological_process owl:Class GO:0003318 biolink:NamedThing cell migration to the midline involved in heart development The orderly movement of a cell toward the midline that contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-27T09:15:43Z biological_process owl:Class GO:0014866 biolink:NamedThing skeletal myofibril assembly The process whose specific outcome is the progression of the skeletal myofibril over time, from its formation to the mature structure. A skeletal myofibril is a myofibril specific to skeletal muscle cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106265 biolink:NamedThing THPH synthase activity Catalysis of the reaction: 3 H+ + hexanoyl-CoA + 3 malonyl-CoA = 2,4,6-trihydroxyphenylhexan-1-one + 3 CO2 + 4 CoA. tmpzr1t_l9r_go_relaxed.owl polyketide syntase RHEA:64352 hjd 2020-06-02T18:05:33Z molecular_function owl:Class GO:0016740 biolink:NamedThing transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8868783|Reactome:R-HSA-1483186|Reactome:R-HSA-1483089|Reactome:R-HSA-5668414|EC:2.-.-.- molecular_function owl:Class GO:1902063 biolink:NamedThing betaine aldehyde biosynthetic process The chemical reactions and pathways resulting in the formation of betaine aldehyde. tmpzr1t_l9r_go_relaxed.owl betaine aldehyde synthesis|betaine aldehyde anabolism|betaine aldehyde formation|betaine aldehyde biosynthesis di 2013-04-16T12:07:17Z biological_process owl:Class GO:1901576 biolink:NamedThing organic substance biosynthetic process The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. tmpzr1t_l9r_go_relaxed.owl organic molecular entity biosynthesis|organic substance formation|organic substance synthesis|organic molecular entity formation|organic substance biosynthesis|organic molecular entity synthesis|organic molecular entity biosynthetic process|organic substance anabolism|organic molecular entity anabolism pr 2012-11-05T11:04:40Z biological_process owl:Class GO:1990172 biolink:NamedThing G protein-coupled receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a G protein-coupled receptor. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor catabolic process sp 2013-08-22T10:16:58Z biological_process owl:Class GO:0140288 biolink:NamedThing GBAF complex A SWI/SNF subcomplex that incorporates two mutually exclusive paralogs, GLTSCR1 (glioma tumor suppressor candidate region gene 1) or GLTSCR1L (GLTSCR1-like), BRD9 (bromodomain-containing 9) and the BAF subunits BAF155, BAF60, SS18, BAF53a, and BRG1/BRM. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-20T09:13:52Z cellular_component owl:Class GO:1903988 biolink:NamedThing iron ion export across plasma membrane The directed movement of iron ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl iron(2+) export|iron cation export|ferrous iron export|ferrous iron export across plasma membrane An example of this is mouse ferroportin (symbol Slc40a1, UniProtKB identifier: Q9JHI9). rl 2014-09-03T13:01:37Z GO:1903414 biological_process owl:Class GO:0070839 biolink:NamedThing metal ion export The directed movement of metal cations, out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl divalent metal ion export mah 2009-07-31T01:07:46Z biological_process owl:Class GO:0030624 biolink:NamedThing U6atac snRNA binding Binding to a U6atac small nuclear RNA (U6atac snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019756 biolink:NamedThing cyanogenic glycoside biosynthetic process The chemical reactions and pathways resulting in the formation of cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits. tmpzr1t_l9r_go_relaxed.owl cyanogenic glycoside formation|cyanogenic glycoside synthesis|cyanogenic glycoside anabolism|cyanogenic glycoside biosynthesis biological_process owl:Class GO:0018259 biolink:NamedThing RNA-protein covalent cross-linking via peptidyl-serine The formation of a covalent cross-link between RNA and a peptidyl-serine residue by the formation of O-(phospho-5'-5NA)-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0213 biological_process owl:Class GO:0018144 biolink:NamedThing RNA-protein covalent cross-linking The formation of a covalent cross-link between RNA and a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050168 biolink:NamedThing pentanamidase activity Catalysis of the reaction: H(2)O + pentanamide = NH(4)(+) + valerate. tmpzr1t_l9r_go_relaxed.owl valeramidase activity|pentanamide amidohydrolase activity RHEA:10000|KEGG_REACTION:R02938|EC:3.5.1.50|MetaCyc:PENTANAMIDASE-RXN molecular_function owl:Class GO:1904222 biolink:NamedThing positive regulation of serine C-palmitoyltransferase activity Any process that activates or increases the frequency, rate or extent of serine C-palmitoyltransferase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of serine C-palmitoyltransferase activity|upregulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|up regulation of 3-oxosphinganine synthetase activity|up-regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|up-regulation of 3-oxosphinganine synthetase activity|upregulation of SPT|up regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|activation of serine C-palmitoyltransferase activity|activation of acyl-CoA:serine C-2 acyltransferase decarboxylating|up-regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|positive regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|up regulation of SPT|positive regulation of SPT|upregulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|upregulation of serine C-palmitoyltransferase activity|activation of SPT|activation of 3-oxosphinganine synthetase activity|up-regulation of SPT|activation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|up regulation of acyl-CoA:serine C-2 acyltransferase decarboxylating|up-regulation of serine C-palmitoyltransferase activity|positive regulation of 3-oxosphinganine synthetase activity|positive regulation of palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|upregulation of 3-oxosphinganine synthetase activity Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of the substrate availability rl 2015-05-15T08:27:45Z biological_process owl:Class GO:0050467 biolink:NamedThing pentalenene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + pentalenene. tmpzr1t_l9r_go_relaxed.owl 2-trans,6-trans-farnesyldiphosphate diphosphate-lyase (cyclizing, pentalenene-forming)|2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, pentalenene-forming)|pentalenene synthetase activity MetaCyc:PENTALENENE-SYNTHASE-RXN|RHEA:18081|KEGG_REACTION:R02305|EC:4.2.3.7 molecular_function owl:Class GO:0006066 biolink:NamedThing alcohol metabolic process The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. tmpzr1t_l9r_go_relaxed.owl alcohol metabolism biological_process owl:Class GO:1904089 biolink:NamedThing negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of neuron apoptosis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of programmed cell death, neurons by negative regulation of transcription from RNA polymerase II promoter pr 2015-03-25T21:04:51Z biological_process owl:Class GO:0043524 biolink:NamedThing negative regulation of neuron apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons. tmpzr1t_l9r_go_relaxed.owl inhibition of neuron apoptosis|downregulation of neuron apoptosis|negative regulation of neuron apoptosis|down regulation of neuron apoptosis|neuron survival|down-regulation of neuron apoptosis|negative regulation of programmed cell death, neurons biological_process owl:Class GO:0002426 biolink:NamedThing immunoglobulin production in mucosal tissue The synthesis and release of immunoglobulin in the mucosal tissue. tmpzr1t_l9r_go_relaxed.owl antibody production in mucosal tissue Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0002381 biolink:NamedThing immunoglobulin production involved in immunoglobulin-mediated immune response The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus during an immune response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl immunoglobulin production during immune response|antibody secretion during immune response|immunoglobulin biosynthetic process involved in immune response|antibody production during immune response|immunoglobulin secretion involved in immune response|immunoglobulin production involved in immune response|immunoglobulin production involved in immunoglobulin mediated immune response Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0002380|GO:0002379 biological_process owl:Class GO:0008970 biolink:NamedThing phospholipase A1 activity Catalysis of the reaction: phosphatidylcholine + H2O = 2-acylglycerophosphocholine + a carboxylate. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine 1-acylhydrolase activity Reactome:R-HSA-1482847|MetaCyc:PHOSPHOLIPASE-A1-RXN|Reactome:R-HSA-1482892|EC:3.1.1.32|RHEA:18689|Reactome:R-HSA-1482827|Reactome:R-HSA-1482920|Reactome:R-HSA-1482828|Reactome:R-HSA-1482932|Reactome:R-HSA-5694485|Reactome:R-HSA-1482862 molecular_function owl:Class GO:0042888 biolink:NamedThing molybdenum ion transmembrane transporter activity Enables the transfer of molybdenum (Mo) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046915 biolink:NamedThing transition metal ion transmembrane transporter activity Enables the transfer of transition metal ions from one side of a membrane to the other. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048092 biolink:NamedThing negative regulation of male pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in males. tmpzr1t_l9r_go_relaxed.owl inhibition of male pigmentation|down-regulation of male pigmentation|downregulation of male pigmentation|down regulation of male pigmentation biological_process owl:Class GO:0055111 biolink:NamedThing ingression involved in gastrulation with mouth forming second The migration of individual cells into the embryo involved in deuterostomic gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042074 biolink:NamedThing cell migration involved in gastrulation The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905193 biolink:NamedThing negative regulation of chloroplast fission Any process that stops, prevents or reduces the frequency, rate or extent of chloroplast fission. tmpzr1t_l9r_go_relaxed.owl down-regulation of chloroplast fission|down-regulation of chloroplast division|inhibition of chloroplast division|negative regulation of chloroplast division|down regulation of chloroplast division|downregulation of chloroplast division|inhibition of chloroplast fission|downregulation of chloroplast fission|down regulation of chloroplast fission Any process that modulates the rate, frequency or extent of chloroplast fission. Chloroplast fission is the division of a chloroplast within a cell to form two or more separate chloroplast compartments. lr 2016-05-10T19:07:43Z biological_process owl:Class GO:0002931 biolink:NamedThing response to ischemia Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a inadequate blood supply. tmpzr1t_l9r_go_relaxed.owl Ischemia always results in hypoxia; however, hypoxia can occur without ischemia. hjd 2012-04-20T02:57:51Z biological_process owl:Class GO:0006950 biolink:NamedThing response to stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl response to biotic stress|response to abiotic stress Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0032257 biolink:NamedThing maintenance of dense core granule location Any process in which a dense core granule is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of dense core granule localization|maintenance of dense core vesicle location biological_process owl:Class GO:0032255 biolink:NamedThing maintenance of secretory granule location Any process in which a secretory granule is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of secretory granule localization biological_process owl:Class GO:0102873 biolink:NamedThing 1-18:1-2-16:0-digalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:1-2-16:0-digalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-16:0-digalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.23|MetaCyc:RXN-8363 molecular_function owl:Class GO:1904146 biolink:NamedThing positive regulation of meiotic cell cycle process involved in oocyte maturation Any process that activates or increases the frequency, rate or extent of meiotic cell cycle process involved in oocyte maturation. tmpzr1t_l9r_go_relaxed.owl up regulation of meiotic cell cycle process involved in oocyte maturation|upregulation of meiotic cell cycle process involved in oocyte maturation|up-regulation of meiotic cell cycle process involved in oocyte maturation|activation of meiotic cell cycle process involved in oocyte maturation tb 2015-04-14T15:59:28Z biological_process owl:Class GO:1903538 biolink:NamedThing regulation of meiotic cell cycle process involved in oocyte maturation Any process that modulates the frequency, rate or extent of meiotic cell cycle process involved in oocyte maturation. tmpzr1t_l9r_go_relaxed.owl regulation of meiosis involved in oocyte maturation pr 2014-10-09T10:52:38Z biological_process owl:Class GO:0045332 biolink:NamedThing phospholipid translocation The movement of a phospholipid molecule from one leaflet of a membrane bilayer to the opposite leaflet. tmpzr1t_l9r_go_relaxed.owl flippase|phospholipid scrambling Note that this term describes the transbilayer motion of individual phospholipid molecules, and should not be confused with 'phospholipid scrambling ; GO:0017121'. biological_process owl:Class GO:0015914 biolink:NamedThing phospholipid transport The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006618 biolink:NamedThing SRP-dependent cotranslational protein targeting to membrane, signal sequence processing The removal of the signal peptide from a nascent protein during cotranslational membrane targeting. tmpzr1t_l9r_go_relaxed.owl SRP-dependent cotranslational membrane targeting, signal sequence processing|SRP-dependent cotranslational protein-membrane targeting, signal sequence processing|signal sequence processing during SRP-dependent cotranslational protein targeting to membrane biological_process owl:Class GO:0006465 biolink:NamedThing signal peptide processing The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. tmpzr1t_l9r_go_relaxed.owl leader peptide processing biological_process owl:Class GO:0043173 biolink:NamedThing nucleotide salvage Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nucleotide_salvage biological_process owl:Class GO:0018889 biolink:NamedThing 2-chloro-N-isopropylacetanilide metabolic process The chemical reactions and pathways involving 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants. tmpzr1t_l9r_go_relaxed.owl 2-chloro-N-isopropylacetanilide metabolism|propachlor metabolism|propachlor metabolic process UM-BBD_pathwayID:ppc biological_process owl:Class GO:2000227 biolink:NamedThing negative regulation of pancreatic A cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of pancreatic A cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of pancreatic alpha cell differentiation mah 2010-11-09T03:43:40Z biological_process owl:Class GO:2000226 biolink:NamedThing regulation of pancreatic A cell differentiation Any process that modulates the frequency, rate or extent of pancreatic A cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of pancreatic alpha cell differentiation mah 2010-11-09T03:43:37Z biological_process owl:Class GO:0047950 biolink:NamedThing glutathione oxidase activity Catalysis of the reaction: 2 glutathione + O(2) = glutathione disulfide + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl glutathione:oxygen oxidoreductase activity KEGG_REACTION:R00120|MetaCyc:GLUTATHIONE-OXIDASE-RXN|RHEA:24112|EC:1.8.3.3 molecular_function owl:Class GO:0016670 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, oxygen as acceptor EC:1.8.3.- molecular_function owl:Class GO:0035280 biolink:NamedThing miRNA loading onto RISC involved in gene silencing by miRNA The transfer of a microRNA (miRNA) strand from a miRNA:miRNA duplex onto the RNA-initiated silencing complex (RISC). tmpzr1t_l9r_go_relaxed.owl microRNA loading onto RISC involved in gene silencing by microRNA|miRNA-mediated gene silencing, miRNA loading onto RISC|gene silencing by miRNA, miRNA loading onto RISC|miRISC assembly biological_process owl:Class GO:1904552 biolink:NamedThing regulation of chemotaxis to arachidonic acid Any process that modulates the frequency, rate or extent of chemotaxis to arachidonic acid. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-13T21:08:14Z biological_process owl:Class GO:0031247 biolink:NamedThing actin rod assembly The assembly of actin rods, a cellular structure consisting of parallel, hexagonally arranged actin tubules. tmpzr1t_l9r_go_relaxed.owl actin rod formation biological_process owl:Class GO:0051017 biolink:NamedThing actin filament bundle assembly The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. tmpzr1t_l9r_go_relaxed.owl actin cable formation|actin bundling activity|actin cable assembly GO:0045011 biological_process owl:Class GO:0036184 biolink:NamedThing asperthecin biosynthetic process The chemical reactions and pathways resulting in the formation of asperthecin, an anthraquinone pigment obtained from the mould Aspergillus nidulans. tmpzr1t_l9r_go_relaxed.owl asperthecin formation|asperthecin synthesis|asperthecin biosynthesis bf 2012-04-16T11:36:56Z biological_process owl:Class GO:0099593 biolink:NamedThing endocytosed synaptic vesicle to endosome fusion Fusion of an endocytosed synaptic vesicle with an endosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016189 biolink:NamedThing synaptic vesicle to endosome fusion Fusion of a synaptic vesicle with an endosome. tmpzr1t_l9r_go_relaxed.owl This covers fusion of synaptic vesicles trafficked to the synapse as well as fusion of endocytosed vesicles as part of recycling. It is there for not part of the synaptic vesicle cycle. biological_process owl:Class GO:0060533 biolink:NamedThing bronchus cartilage morphogenesis The process in which the bronchus cartilage is generated and organized. The bronchus cartilage is the connective tissue of the portion of the airway that connects to the lungs. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:47:41Z biological_process owl:Class GO:0060536 biolink:NamedThing cartilage morphogenesis The process in which the anatomical structures of cartilage are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T09:13:27Z biological_process owl:Class GO:0036378 biolink:NamedThing calcitriol biosynthetic process from calciol Conversion of vitamin D3 from its largely inactive form (calciol, also called cholecalciferol) into a hormonally active form (calcitriol). Conversion requires 25-hydroxylation of calciol in the liver to form calcidiol, and subsequent 1,alpha-hydroxylation of calcidiol in the kidney to form calcitriol. tmpzr1t_l9r_go_relaxed.owl 1alpha,25(OH)2D3 biosynthesis|1alpha,25-dihydroxycholecalciferol biosynthesis|calcitriol biosynthesis from calciol|1alpha,25-dihydroxyvitamin D3 biosynthesis|vitamin D3 activation bf 2013-05-15T11:46:08Z biological_process owl:Class GO:0070640 biolink:NamedThing vitamin D3 metabolic process The chemical reactions and pathways involving vitamin D3, (3S,5Z,7E)-9,10-secocholesta-5,7,10(19)-trien-3-ol. tmpzr1t_l9r_go_relaxed.owl vitamin D3 metabolism|cholecalciferol metabolic process|calciol metabolic process mah 2009-05-08T02:24:24Z biological_process owl:Class GO:1900323 biolink:NamedThing positive regulation of maltotetraose transport Any process that activates or increases the frequency, rate or extent of maltotetraose transport. tmpzr1t_l9r_go_relaxed.owl up regulation of maltotetraose transport|up-regulation of maltotetraose transport|activation of maltotetraose transport|upregulation of maltotetraose transport tt 2012-04-06T01:45:54Z biological_process owl:Class GO:1900321 biolink:NamedThing regulation of maltotetraose transport Any process that modulates the frequency, rate or extent of maltotetraose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:45:36Z biological_process owl:Class GO:0110112 biolink:NamedThing regulation of lipid transporter activity Any process that modulates the frequency, rate, or extent of lipid transporter activity. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-06T18:53:55Z biological_process owl:Class GO:0072663 biolink:NamedThing establishment of protein localization to peroxisome The directed movement of a protein to a specific location in a peroxisome. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to peroxisome mah 2011-02-14T02:50:36Z biological_process owl:Class GO:0045273 biolink:NamedThing respiratory chain complex II A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. tmpzr1t_l9r_go_relaxed.owl electron transport complex II cellular_component owl:Class GO:0098803 biolink:NamedThing respiratory chain complex Any protein complex that is part of a respiratory chain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034077 biolink:NamedThing butanediol metabolic process The chemical reactions and pathways involving butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3. tmpzr1t_l9r_go_relaxed.owl butanediol metabolism|butylene glycol metabolic process|butylene glycol metabolism biological_process owl:Class GO:1990811 biolink:NamedThing MWP complex A protein ternary complex that anchors microtubule minus ends to mitotic spindle pole bodies. The founding complex contains a microtubule anchoring protein (Msd1 in fission yeast), A WD-repeat Wdr8 family protein and and a minus end-directed kinesin. tmpzr1t_l9r_go_relaxed.owl Msd1-Wdr8-Pkl1 complex vw 2015-07-24T13:34:31Z cellular_component owl:Class GO:0052128 biolink:NamedThing positive energy taxis The directed movement of a motile cell or organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009453 biolink:NamedThing energy taxis The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. tmpzr1t_l9r_go_relaxed.owl taxis in response to energy source|energytaxis biological_process owl:Class GO:1902138 biolink:NamedThing (-)-secoisolariciresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-secoisolariciresinol anabolism|(-)-secoisolariciresinol formation|(-)-secoisolariciresinol synthesis|(-)-secoisolariciresinol biosynthesis ms 2013-05-21T08:50:29Z biological_process owl:Class GO:1903419 biolink:NamedThing protein localization to cortical endoplasmic reticulum A process in which a protein is transported to, or maintained in, a location within a cortical endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl protein localisation to cortical endoplasmic reticulum|protein localization to cortical ER|protein localization in cortical endoplasmic reticulum|protein localisation in cortical endoplasmic reticulum mah 2014-09-08T16:03:28Z biological_process owl:Class GO:1903420 biolink:NamedThing protein localization to endoplasmic reticulum tubular network A process in which a protein is transported to, or maintained in, a location within an endoplasmic reticulum tubular network. tmpzr1t_l9r_go_relaxed.owl protein localisation in endoplasmic reticulum tubular network|protein localization to tubular ER|protein localisation to endoplasmic reticulum tubular network|protein localization in endoplasmic reticulum tubular network mah 2014-09-08T16:03:37Z biological_process owl:Class GO:1904913 biolink:NamedThing regulation of establishment of protein-containing complex localization to telomere Any process that modulates the frequency, rate or extent of establishment of the localization of a protein-containing macromolecular complex to a telomere. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of macromolecular complex localisation to telomere|regulation of establishment of macromolecular complex localization to telomere rph 2016-01-19T10:38:22Z biological_process owl:Class GO:1904061 biolink:NamedThing positive regulation of locomotor rhythm Any process that activates or increases the frequency, rate or extent of locomotor rhythm. tmpzr1t_l9r_go_relaxed.owl up regulation of locomotor rhythm|activation of circadian locomotor activity rhythm|up-regulation of locomotor rhythm|up-regulation of circadian locomotor activity rhythm|positive regulation of circadian locomotor activity rhythm|upregulation of locomotor rhythm|activation of locomotor rhythm|up regulation of circadian locomotor activity rhythm|upregulation of circadian locomotor activity rhythm sl 2015-03-18T20:39:03Z biological_process owl:Class GO:0048520 biolink:NamedThing positive regulation of behavior Any process that activates or increases the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli. tmpzr1t_l9r_go_relaxed.owl up-regulation of behavior|stimulation of behavior|activation of behavior|up regulation of behavior|upregulation of behavior biological_process owl:Class GO:0032713 biolink:NamedThing negative regulation of interleukin-4 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-4 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-4 biosynthetic process|inhibition of interleukin-4 production|negative regulation of interleukin-4 secretion|down regulation of interleukin-4 production|down-regulation of interleukin-4 production|negative regulation of IL-4 production|downregulation of interleukin-4 production bc GO:0150134|GO:0045403 biological_process owl:Class GO:0032673 biolink:NamedThing regulation of interleukin-4 production Any process that modulates the frequency, rate, or extent of interleukin-4 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-4 production|regulation of interleukin-4 biosynthetic process|regulation of interleukin-4 secretion GO:0045402|GO:0150133 biological_process owl:Class GO:0075027 biolink:NamedThing positive regulation of appressorium initiation Any process that activates or increases the frequency, rate or extent of symbiont appressorium initiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of initiation of appressorium on or near host|positive regulation of appressorium initiation on or near host biological_process owl:Class GO:0075026 biolink:NamedThing regulation of appressorium initiation Any process that modulates the frequency, rate or extent of symbiont appressorium initiation. tmpzr1t_l9r_go_relaxed.owl regulation of appressorium initiation on or near host|regulation of initiation of appressorium on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0099033 biolink:NamedThing anchored component of postsynaptic recycling endosome membrane The component of the postsynaptic recycling endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046048 biolink:NamedThing UDP metabolic process The chemical reactions and pathways involving UDP, uridine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP metabolism biological_process owl:Class GO:0009218 biolink:NamedThing pyrimidine ribonucleotide metabolic process The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleotide metabolism biological_process owl:Class GO:1903456 biolink:NamedThing positive regulation of androst-4-ene-3,17-dione biosynthetic process Any process that activates or increases the frequency, rate or extent of androst-4-ene-3,17-dione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of androstenedione|activation of androst-4-ene-3,17-dione synthesis|up-regulation of androstenedione biosynthetic process|up regulation of androst-4-ene-3,17-dione biosynthetic process|up regulation of androst-4-ene-3,17-dione biosynthesis|positive regulation of androst-4-ene-3,17-dione biosynthesis|up-regulation of androst-4-ene-3,17-dione anabolism|positive regulation of androstenedione biosynthetic process|up regulation of androst-4-ene-3,17-dione formation|positive regulation of androst-4-ene-3,17-dione anabolism|upregulation of androstenedione biosynthetic process|up-regulation of androst-4-ene-3,17-dione biosynthetic process|up-regulation of androst-4-ene-3,17-dione formation|positive regulation of androst-4-ene-3,17-dione formation|activation of androst-4-ene-3,17-dione formation|up regulation of androst-4-ene-3,17-dione anabolism|upregulation of androst-4-ene-3,17-dione biosynthesis|up-regulation of androst-4-ene-3,17-dione biosynthesis|positive regulation of androst-4-ene-3,17-dione synthesis|activation of androst-4-ene-3,17-dione biosynthetic process|up regulation of androstenedione biosynthetic process|up-regulation of androst-4-ene-3,17-dione synthesis|activation of androst-4-ene-3,17-dione anabolism|up regulation of androst-4-ene-3,17-dione synthesis|upregulation of androst-4-ene-3,17-dione formation|activation of androst-4-ene-3,17-dione biosynthesis|upregulation of androst-4-ene-3,17-dione synthesis|upregulation of androst-4-ene-3,17-dione anabolism|upregulation of androst-4-ene-3,17-dione biosynthetic process mr 2014-09-22T14:37:07Z biological_process owl:Class GO:0090049 biolink:NamedThing regulation of cell migration involved in sprouting angiogenesis Any process that modulates the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-07T10:37:16Z biological_process owl:Class GO:2000201 biolink:NamedThing negative regulation of ribosomal subunit export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of ribosomal subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl negative regulation of ribosomal subunit-nucleus export|negative regulation of ribosomal subunit export from cell nucleus|negative regulation of ribosomal subunit transport from nucleus to cytoplasm|negative regulation of ribosomal subunit export out of nucleus|negative regulation of ribosome export from nucleus mah 2010-10-26T10:44:32Z biological_process owl:Class GO:0097613 biolink:NamedThing dinoflagellate epicone The part of a dinoflagellate cell above the cingulum; also referred to as the anterior portion of a dinoflagellate cell. It is separated from the hypocone by the cingulum. tmpzr1t_l9r_go_relaxed.owl epitheca|episome|epicone The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-06-09T11:32:48Z cellular_component owl:Class GO:0055081 biolink:NamedThing anion homeostasis Any process involved in the maintenance of an internal steady state of anions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022003 biolink:NamedThing negative regulation of anterior neural cell fate commitment of the neural plate by fibroblast growth factor receptor signaling pathway The series of molecular signals that stops, prevents or reduces the frequency or rate at which cell adopts an anterior neural cell fate, generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl fgf receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate|fgf receptor signaling involved in downregulation of anterior neural cell fate of the neural plate|fgf receptor signalling involved in negative regulation of anterior neural cell fate of the neural plate|fgf receptor signaling involved in down-regulation of anterior neural cell fate of the neural plate|fgf receptor signaling involved in down regulation of anterior neural cell fate of the neural plate|fgf receptor signaling involved in inhibition of anterior neural cell fate of the neural plate biological_process owl:Class GO:0060825 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the anterior/posterior pattern of the neural plate. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:40:03Z biological_process owl:Class GO:0106050 biolink:NamedThing tRNA 2'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing a 2'-O-nucleotide. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-11T20:30:31Z molecular_function owl:Class GO:0008175 biolink:NamedThing tRNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6786567|Reactome:R-HSA-6782879|Reactome:R-HSA-6783473|Reactome:R-HSA-6782890|Reactome:R-HSA-6782881|Reactome:R-HSA-6786500 molecular_function owl:Class GO:1904904 biolink:NamedThing regulation of endothelial cell-matrix adhesion via fibronectin Any process that modulates the frequency, rate or extent of endothelial cell-matrix adhesion via fibronectin. tmpzr1t_l9r_go_relaxed.owl bc 2016-01-19T10:23:01Z biological_process owl:Class GO:0001952 biolink:NamedThing regulation of cell-matrix adhesion Any process that modulates the frequency, rate or extent of attachment of a cell to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019550 biolink:NamedThing glutamate catabolic process to aspartate The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including aspartate. tmpzr1t_l9r_go_relaxed.owl glutamate breakdown to aspartate|glutamate degradation to aspartate MetaCyc:GLUTDEG-PWY biological_process owl:Class GO:0006531 biolink:NamedThing aspartate metabolic process The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid. tmpzr1t_l9r_go_relaxed.owl aspartate metabolism biological_process owl:Class GO:0098911 biolink:NamedThing regulation of ventricular cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a ventricular cardiac muscle cell contributing to the regulation of its contraction. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:59:36Z biological_process owl:Class GO:0015481 biolink:NamedThing maltose transporting porin activity Enables the transfer of maltose from one side of a membrane to the other. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the enzymatic breakdown of glycogen and starch. This transporter is a porin so enables the energy independent passage of substances, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl maltoporin Wikipedia:Maltoporin molecular_function owl:Class GO:0005363 biolink:NamedThing maltose transmembrane transporter activity Enables the transfer of maltose from one side of a membrane to the other. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the enzymatic breakdown of glycogen and starch. tmpzr1t_l9r_go_relaxed.owl maltose porter activity RHEA:33171 GO:0015581 molecular_function owl:Class GO:0034207 biolink:NamedThing steroid acetylation The addition of an acetyl group to a steroid molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030258 biolink:NamedThing lipid modification The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031974 biolink:NamedThing membrane-enclosed lumen The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050325 biolink:NamedThing tauropine dehydrogenase activity Catalysis of the reaction: H(2)O + NAD(+) + tauropine = H(+) + NADH + pyruvate + taurine. tmpzr1t_l9r_go_relaxed.owl N2-(D-1-carboxyethyl)taurine:NAD+ oxidoreductase (taurine-forming)|2-N-(D-1-carboxyethyl)taurine:NAD+ oxidoreductase (taurine-forming) RHEA:12580|KEGG_REACTION:R01683|EC:1.5.1.23|MetaCyc:TAUROPINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0031531 biolink:NamedThing thyrotropin-releasing hormone receptor binding Binding to a receptor for thyrotropin-releasing hormone, a tripeptide hormone that is produced by the hypothalamus and stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl thyrotropin releasing hormone receptor binding|thyrotropin-releasing hormone receptor ligand GO:0031888 molecular_function owl:Class GO:0051428 biolink:NamedThing peptide hormone receptor binding Binding to a receptor for a peptide hormone. tmpzr1t_l9r_go_relaxed.owl polypeptide hormone receptor binding molecular_function owl:Class GO:0042721 biolink:NamedThing TIM22 mitochondrial import inner membrane insertion complex A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12. tmpzr1t_l9r_go_relaxed.owl Tim22 complex|mitochondrial protein translocase complex|mitochondrial inner membrane protein insertion complex cellular_component owl:Class GO:0070376 biolink:NamedThing regulation of ERK5 cascade Any process that modulates the frequency, rate or extent of signal transduction mediated by the ERK5 cascade. tmpzr1t_l9r_go_relaxed.owl regulation of BMK cascade|regulation of ERK5 signaling pathway|regulation of BMK signalling pathway|regulation of BMK1 cascade|regulation of MAPK7 cascade|regulation of BMK signaling pathway biological_process owl:Class GO:0070981 biolink:NamedThing L-asparagine biosynthetic process The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-asparagine formation|L-asparagine anabolism|L-asparagine biosynthesis|L-asparagine synthesis mah 2009-10-27T12:59:42Z biological_process owl:Class GO:0043604 biolink:NamedThing amide biosynthetic process The chemical reactions and pathways resulting in the formation of an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901752 biolink:NamedThing leukotriene A4 catabolic process The chemical reactions and pathways resulting in the breakdown of leukotriene A4. tmpzr1t_l9r_go_relaxed.owl leukotriene A4 breakdown|leukotriene A4 catabolism|leukotriene A4 degradation yaf 2013-01-14T11:05:04Z biological_process owl:Class GO:0046700 biolink:NamedThing heterocycle catabolic process The chemical reactions and pathways resulting in the breakdown of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). tmpzr1t_l9r_go_relaxed.owl heterocycle catabolism|heterocycle degradation|heterocycle breakdown biological_process owl:Class GO:0099029 biolink:NamedThing anchored component of presynaptic active zone membrane The component of the presynaptic active zone membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905023 biolink:NamedThing positive regulation of threonine-tRNA ligase activity Any process that activates or increases the frequency, rate or extent of threonine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of threonyl-tRNA synthetase activity|up regulation of TRS|upregulation of threonine translase activity|upregulation of TRS|up regulation of threonyl-transfer ribonucleic acid synthetase activity|upregulation of threonyl-transfer ribonucleic acid synthetase activity|upregulation of threonyl-transfer ribonucleate synthetase activity|up-regulation of threonine-tRNA ligase activity|positive regulation of threonine translase activity|up regulation of threonyl-transfer RNA synthetase activity|activation of threonine-tRNA ligase activity|up regulation of threonine translase activity|up-regulation of threonine translase activity|up-regulation of L-threonine:tRNAThr ligase (AMP-forming)|positive regulation of threonyl-transfer ribonucleic acid synthetase activity|activation of threonyl ribonucleic synthetase activity|positive regulation of threonyl-transfer ribonucleate synthetase activity|up regulation of threonine-transfer ribonucleate synthetase activity|activation of threonyl-tRNA synthetase activity|up regulation of threonyl-tRNA synthetase activity|upregulation of threonine-tRNA ligase activity|up-regulation of TRS|activation of threonine translase activity|activation of threonine-transfer ribonucleate synthetase activity|up-regulation of threonyl-transfer RNA synthetase activity|positive regulation of threonine-transfer ribonucleate synthetase activity|positive regulation of TRS|up regulation of threonyl ribonucleic synthetase activity|activation of threonyl-transfer RNA synthetase activity|upregulation of threonyl-transfer RNA synthetase activity|positive regulation of threonyl-transfer RNA synthetase activity|upregulation of threonyl ribonucleic synthetase activity|up regulation of threonyl-transfer ribonucleate synthetase activity|activation of TRS|positive regulation of threonyl ribonucleic synthetase activity|activation of threonyl-transfer ribonucleic acid synthetase activity|up-regulation of threonyl-transfer ribonucleic acid synthetase activity|up regulation of L-threonine:tRNAThr ligase (AMP-forming)|activation of L-threonine:tRNAThr ligase (AMP-forming)|positive regulation of L-threonine:tRNAThr ligase (AMP-forming)|up-regulation of threonyl-tRNA synthetase activity|upregulation of threonine-transfer ribonucleate synthetase activity|up-regulation of threonyl ribonucleic synthetase activity|activation of threonyl-transfer ribonucleate synthetase activity|up regulation of threonine-tRNA ligase activity|up-regulation of threonine-transfer ribonucleate synthetase activity|upregulation of L-threonine:tRNAThr ligase (AMP-forming)|positive regulation of threonyl-tRNA synthetase activity|up-regulation of threonyl-transfer ribonucleate synthetase activity sl 2016-03-03T19:12:41Z biological_process owl:Class GO:1901774 biolink:NamedThing lincomycin biosynthetic process The chemical reactions and pathways resulting in the formation of lincomycin. tmpzr1t_l9r_go_relaxed.owl lincomycin biosynthesis|lincomycin formation|lincomycin anabolism|lincomycin synthesis yaf 2013-01-15T11:54:01Z biological_process owl:Class GO:0033384 biolink:NamedThing geranyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of geranyl diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl diphosphate anabolism|geranyldiphosphate biosynthetic process|geranyl diphosphate biosynthesis|geranyl diphosphate formation|geranyl diphosphate synthesis MetaCyc:PWY-5122 biological_process owl:Class GO:0016114 biolink:NamedThing terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. tmpzr1t_l9r_go_relaxed.owl terpenoid synthesis|terpenoid anabolism|terpenoid formation|terpenoid biosynthesis Wikipedia:Terpenoid biological_process owl:Class GO:0000445 biolink:NamedThing THO complex part of transcription export complex The THO complex when it is part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp1, and Mft1, while the human complex is composed of 7 subunits. tmpzr1t_l9r_go_relaxed.owl THO complex part of TREX complex cellular_component owl:Class GO:0000347 biolink:NamedThing THO complex The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1p, Tho2p, Thp1p, and Mft1p, while the human complex is composed of 7 subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036000 biolink:NamedThing mucocyst A small subcellular vesicle, surrounded by a membrane, in the pellicle of ciliate protozoans that discharges a mucus-like secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-09-06T01:32:17Z cellular_component owl:Class GO:0030141 biolink:NamedThing secretory granule A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules. tmpzr1t_l9r_go_relaxed.owl secretory vesicle Note that the term 'secretory vesicle' is sometimes used in this sense, but can also mean 'transport vesicle ; GO:0030133'. cellular_component owl:Class GO:0071307 biolink:NamedThing cellular response to vitamin K Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin K stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:36:09Z biological_process owl:Class GO:0061337 biolink:NamedThing cardiac conduction Transfer of an organized electrical impulse across the heart to coordinate the contraction of cardiac muscles. The process begins with generation of an action potential (in the sinoatrial node (SA) in humans) and ends with a change in the rate, frequency, or extent of the contraction of the heart muscles. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T08:46:05Z biological_process owl:Class GO:0008016 biolink:NamedThing regulation of heart contraction Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac contraction biological_process owl:Class GO:0004855 biolink:NamedThing xanthine oxidase activity Catalysis of the reaction: xanthine + H2O + O2 = urate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl xanthine:O2 oxidoreductase activity|schardinger enzyme|xanthine:O(2) oxidoreductase activity|xanthine:xanthine oxidase activity|xanthine:oxygen oxidoreductase activity|Schardinger enzyme activity|hypoxanthine-xanthine oxidase activity|xanthine oxidoreductase activity Reactome:R-HSA-74258|EC:1.17.3.2|UM-BBD_enzymeID:e0781|RHEA:21132|Reactome:R-HSA-74247|MetaCyc:XANTHINE-OXIDASE-RXN molecular_function owl:Class GO:0016727 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.17.3.- molecular_function owl:Class GO:0050628 biolink:NamedThing 2-oxopropyl-CoM reductase (carboxylating) activity Catalysis of the reaction: acetoacetate + coenzyme M + NADP(+) = 2-oxopropyl-coenzyme M + CO(2) + NADPH. tmpzr1t_l9r_go_relaxed.owl 2-mercaptoethanesulfonate,acetoacetate:NADP+ oxidoreductase (decarboxylating)|2-KPCC activity|NADPH:2-(2-ketopropylthio)ethanesulfonate oxidoreductase/carboxylase activity|NADPH:2-ketopropyl-coenzyme M oxidoreductase/carboxylase activity UM-BBD_reactionID:r0854|MetaCyc:1.8.1.5-RXN|EC:1.8.1.5|KEGG_REACTION:R05713|RHEA:16977 molecular_function owl:Class GO:1902503 biolink:NamedThing adenylyltransferase complex A protein complex which is capable of adenylyltransferase activity. tmpzr1t_l9r_go_relaxed.owl ThiF-ThiS complex bhm 2013-11-14T10:37:25Z cellular_component owl:Class GO:0061695 biolink:NamedThing transferase complex, transferring phosphorus-containing groups A transferase complex capable of catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl dph 2015-05-06T11:22:38Z cellular_component owl:Class GO:2000954 biolink:NamedThing regulation of cyclodextrin metabolic process Any process that modulates the frequency, rate or extent of cyclodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cyclodextrin metabolism tt 2011-08-01T02:22:00Z biological_process owl:Class GO:0052599 biolink:NamedThing methylputrescine oxidase activity Catalysis of the reaction: N-methylputrescine + H2O + O2 = N-methylaminobutanal + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl N-methylputrescine:oxygen oxidoreductase (deaminating) activity MetaCyc:RXN-8244|KEGG_REACTION:R05334|EC:1.4.3.22 molecular_function owl:Class GO:0042358 biolink:NamedThing thiamine diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. tmpzr1t_l9r_go_relaxed.owl thiamine pyrophosphate catabolism|thiamin diphosphate degradation|thiamine pyrophosphate catabolic process|thiamin pyrophosphate catabolic process|thiamin diphosphate catabolic process|thiamine diphosphate catabolism|thiamin diphosphate breakdown|thiamin diphosphate catabolism|TPP catabolic process|TPP catabolism|thiamin pyrophosphate catabolism biological_process owl:Class GO:0009868 biolink:NamedThing jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway The series of molecular signals mediated by jasmonic acid involved in jasmonic acid/ethylene (ethene) dependent systemic resistance. tmpzr1t_l9r_go_relaxed.owl jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signalling pathway|jasmonic acid mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance)|jasmonic acid and ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway|jasmonic acid mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance)|jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway|jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signalling pathway|jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway biological_process owl:Class GO:0009867 biolink:NamedThing jasmonic acid mediated signaling pathway A series of molecular signals mediated by jasmonic acid. tmpzr1t_l9r_go_relaxed.owl jasmonic acid mediated signalling pathway|JA signaling|jasmonate signaling biological_process owl:Class GO:1903760 biolink:NamedThing regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization Any process that modulates the frequency, rate or extent of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential rl 2014-12-19T12:01:59Z biological_process owl:Class GO:1901016 biolink:NamedThing regulation of potassium ion transmembrane transporter activity Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of potassium transporter activity rl 2012-06-15T01:13:49Z biological_process owl:Class GO:0047090 biolink:NamedThing benzoyl-CoA 3-monooxygenase activity Catalysis of the reaction: benzoyl-CoA + H(+) + NADPH + O(2) = 3-hydroxybenzoyl-CoA + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA 3-hydroxylase activity|benzoyl-CoA,NADPH:oxygen oxidoreductase (3-hydroxylating) RHEA:23216|KEGG_REACTION:R02449|EC:1.14.13.58|MetaCyc:1.14.13.58-RXN molecular_function owl:Class GO:0106124 biolink:NamedThing reservosome lumen The volume enclosed by the membranes of a reservosome. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-03T17:54:46Z cellular_component owl:Class GO:1905299 biolink:NamedThing negative regulation of intestinal epithelial cell development Any process that stops, prevents or reduces the frequency, rate or extent of intestinal epithelial cell development. tmpzr1t_l9r_go_relaxed.owl down regulation of intestinal epithelial cell development|downregulation of intestinal epithelial cell development|down-regulation of intestinal epithelial cell development|inhibition of intestinal epithelial cell development rph 2016-06-30T11:40:55Z biological_process owl:Class GO:0030857 biolink:NamedThing negative regulation of epithelial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of epithelial cell differentiation|down-regulation of epithelial cell differentiation|down regulation of epithelial cell differentiation|downregulation of epithelial cell differentiation biological_process owl:Class GO:1905514 biolink:NamedThing positive regulation of short-term synaptic potentiation Any process that activates or increases the frequency, rate or extent of short-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of synaptic facilitation|upregulation of synaptic facilitation|up-regulation of short-term synaptic potentiation|up-regulation of synaptic facilitation|upregulation of short-term synaptic potentiation|activation of short-term synaptic potentiation|up regulation of short-term synaptic potentiation|positive regulation of synaptic facilitation|activation of synaptic facilitation hjd 2016-09-28T17:40:30Z biological_process owl:Class GO:0102089 biolink:NamedThing dehydroscoulerine synthase activity Catalysis of the reaction: (S)-scoulerine + O2 = dehydroscoulerine + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10888 molecular_function owl:Class GO:0046993 biolink:NamedThing oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is oxygen. tmpzr1t_l9r_go_relaxed.owl EC:1.21.3.- molecular_function owl:Class GO:0102938 biolink:NamedThing orcinol O-methyltransferase activity Catalysis of the reaction: orcinol + S-adenosyl-L-methionine = H+ + 3-methoxy-5-hydroxytoluene + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9017|EC:2.1.1.6 molecular_function owl:Class GO:0032691 biolink:NamedThing negative regulation of interleukin-1 beta production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-1 beta biosynthetic process|down regulation of interleukin-1 beta production|negative regulation of interleukin-1 beta secretion|down-regulation of interleukin-1 beta production|negative regulation of IL-1 beta production|downregulation of interleukin-1 beta production|inhibition of interleukin-1 beta production GO:0050724|GO:0050713 biological_process owl:Class GO:0035453 biolink:NamedThing extrinsic component of plastid inner membrane The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to plastid inner membrane|peripheral to plastid inner membrane bf 2010-04-16T10:21:14Z cellular_component owl:Class GO:0035452 biolink:NamedThing extrinsic component of plastid membrane The component of a plastid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to plastid membrane|peripheral to plastid membrane bf 2010-04-16T10:19:33Z cellular_component owl:Class GO:0090233 biolink:NamedThing negative regulation of spindle checkpoint Any process that decreases the rate, frequency, or extent of the spindle checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl spindle checkpoint silencing Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of checkpoint (i.e mitotic spindle or DNA damage etc). tb 2010-01-20T10:29:43Z biological_process owl:Class GO:0090231 biolink:NamedThing regulation of spindle checkpoint Any process that modulates the rate, frequency, or extent of the spindle checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of checkpoint (i.e mitotic spindle or DNA damage etc). tb 2010-01-20T10:29:43Z biological_process owl:Class GO:1902326 biolink:NamedThing positive regulation of chlorophyll biosynthetic process Any process that activates or increases the frequency, rate or extent of chlorophyll biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of chlorophyll synthesis|upregulation of chlorophyll formation|activation of chlorophyll biosynthetic process|positive regulation of chlorophyll formation|activation of chlorophyll formation|upregulation of chlorophyll biosynthetic process|up regulation of chlorophyll synthesis|up regulation of chlorophyll biosynthesis|up regulation of chlorophyll formation|activation of chlorophyll synthesis|up regulation of chlorophyll biosynthetic process|up regulation of chlorophyll anabolism|activation of chlorophyll biosynthesis|activation of chlorophyll anabolism|up-regulation of chlorophyll formation|up-regulation of chlorophyll biosynthetic process|upregulation of chlorophyll anabolism|positive regulation of chlorophyll biosynthesis|upregulation of chlorophyll biosynthesis|up-regulation of chlorophyll synthesis|up-regulation of chlorophyll anabolism|positive regulation of chlorophyll anabolism|up-regulation of chlorophyll biosynthesis|positive regulation of chlorophyll synthesis tb 2013-07-24T22:47:37Z biological_process owl:Class GO:0010380 biolink:NamedThing regulation of chlorophyll biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902854 biolink:NamedThing positive regulation of nuclear migration during mitotic telophase Any process that activates or increases the frequency, rate or extent of nuclear migration during mitotic telophase. tmpzr1t_l9r_go_relaxed.owl activation of nuclear migration during mitotic telophase|upregulation of nuclear migration during mitotic telophase|up regulation of nuclear migration during mitotic telophase|up-regulation of nuclear migration during mitotic telophase vw 2014-04-02T15:36:06Z biological_process owl:Class GO:1902852 biolink:NamedThing regulation of nuclear migration during mitotic telophase Any process that modulates the frequency, rate or extent of nuclear migration during mitotic telophase. tmpzr1t_l9r_go_relaxed.owl vw 2014-04-02T15:35:34Z biological_process owl:Class GO:0070904 biolink:NamedThing transepithelial L-ascorbic acid transport The directed movement of L-ascorbic acid from one side of an epithelium to the other. tmpzr1t_l9r_go_relaxed.owl transepithelial vitamin C transport|transepithelial L-ascorbate transport mah 2009-09-03T02:21:25Z biological_process owl:Class GO:0008643 biolink:NamedThing carbohydrate transport The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are a group of organic compounds based of the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl sugar transport GO:0006861|GO:0008644 biological_process owl:Class GO:0051919 biolink:NamedThing positive regulation of fibrinolysis Any process that activates, maintains or increases the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots. tmpzr1t_l9r_go_relaxed.owl upregulation of fibrinolysis|up regulation of fibrinolysis|stimulation of fibrinolysis|up-regulation of fibrinolysis|activation of fibrinolysis biological_process owl:Class GO:2000288 biolink:NamedThing positive regulation of myoblast proliferation Any process that activates or increases the frequency, rate or extent of myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl rl 2010-12-16T05:20:52Z biological_process owl:Class GO:2000291 biolink:NamedThing regulation of myoblast proliferation Any process that modulates the frequency, rate or extent of myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-20T10:34:26Z biological_process owl:Class GO:0102337 biolink:NamedThing 3-oxo-cerotoyl-CoA synthase activity Catalysis of the reaction: tetracosanoyl-CoA(4-) + malonyl-CoA(5-) + H+ <=> 3-oxohexacosanoyl-CoA + carbon dioxide + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13296|RHEA:36515 molecular_function owl:Class GO:0048052 biolink:NamedThing R1/R6 cell differentiation The process in which relatively unspecialized cells acquire the specialized features of R1 and R6 photoreceptors. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001751 biolink:NamedThing compound eye photoreceptor cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of an eye photoreceptor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901177 biolink:NamedThing lycopene biosynthetic process The chemical reactions and pathways resulting in the formation of lycopene. tmpzr1t_l9r_go_relaxed.owl lycopene anabolism|lycopene formation|lycopene biosynthesis|lycopene synthesis yaf 2012-07-19T09:48:49Z biological_process owl:Class GO:1901175 biolink:NamedThing lycopene metabolic process The chemical reactions and pathways involving lycopene. tmpzr1t_l9r_go_relaxed.owl lycopene metabolism yaf 2012-07-19T09:48:20Z biological_process owl:Class GO:0018839 biolink:NamedThing cis-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate isomerase activity Catalysis of the reaction: cis-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate = trans-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate. tmpzr1t_l9r_go_relaxed.owl EC:5.2.1.-|UM-BBD_reactionID:r0163 molecular_function owl:Class GO:0106298 biolink:NamedThing 13-series resolvin biosynthetic process The chemical reactions and pathways resulting in the formation of resolvin family 13-series, hydroxy fatty acids derived from docosapentaenoic acid. tmpzr1t_l9r_go_relaxed.owl hjd 2020-08-25T13:50:53Z biological_process owl:Class GO:0106295 biolink:NamedThing resolvin biosynthetic process The chemical reactions and pathways resulting in the formation of resolvins, di- or trihydroxy fatty acids derived from omega-3 polyunsaturated fatty acids, specifically icosapentaenoic acid, docosahexaenoic acid and docosapentaenoic acid. tmpzr1t_l9r_go_relaxed.owl Resolvin biosynthesis is a combination of oxidation, reduction and hydrolysis reactions involving lipoxygenases and cyclooxygenases. hjd 2020-08-25T13:46:15Z biological_process owl:Class GO:0042203 biolink:NamedThing toluene catabolic process The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products. tmpzr1t_l9r_go_relaxed.owl toluene degradation|toluene catabolism|toluene breakdown biological_process owl:Class GO:0120253 biolink:NamedThing hydrocarbon catabolic process The chemical reactions and pathways resulting in the breakdown of a hydrocarbon, a compound consisting of carbon and hydrogen only. tmpzr1t_l9r_go_relaxed.owl hydrocarbon catabolism|hydrocarbon degradation|hydrocarbon breakdown https://github.com/geneontology/go-ontology/issues/19842 krc 2020-09-02T20:58:57Z biological_process owl:Class GO:0047291 biolink:NamedThing lactosylceramide alpha-2,3-sialyltransferase activity Catalysis of the reaction: cytolipin-H + CMP-N-acetylneuraminate = alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide + CMP. Alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide is also known as GM3. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate:lactosylceramide alpha-2,3-N-acetylneuraminyltransferase activity|cytidine monophosphoacetylneuraminate-lactosylceramide alpha2,3- sialyltransferase activity|cytidine monophosphoacetylneuraminate-lactosylceramide sialyltransferase|GM3 synthase activity|ganglioside GM3 synthetase activity|CMP-acetylneuraminate-lactosylceramide-sialyltransferase|GM3 synthetase activity|ganglioside GM3 synthase activity|SAT 1|CMP-sialic acid:lactosylceramide-sialyltransferase activity|CMP-acetylneuraminic acid:lactosylceramide sialyltransferase activity MetaCyc:2.4.99.9-RXN|EC:2.4.99.9|RHEA:18417 molecular_function owl:Class GO:0008373 biolink:NamedThing sialyltransferase activity Catalysis of the transfer of sialic acid to an acceptor molecule, typically the terminal portions of the sialylated glycolipids (gangliosides) or to the N- or O-linked sugar chains of glycoproteins. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9694718|Reactome:R-HSA-981814|Reactome:R-HSA-9697018|Reactome:R-HSA-9683769 molecular_function owl:Class GO:0045003 biolink:NamedThing double-strand break repair via synthesis-dependent strand annealing SDSA is a major mechanism of double-strand break repair in mitosis which allows for the error-free repair of a double-strand break without the exchange of adjacent sequences. The broken DNA searches for and base pairs with a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template. Newly synthesized DNA is then displaced from the template and anneal with its complement on the other side of the double-strand break. tmpzr1t_l9r_go_relaxed.owl mitotic gene conversion|SDSA biological_process owl:Class GO:0000724 biolink:NamedThing double-strand break repair via homologous recombination The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. tmpzr1t_l9r_go_relaxed.owl Rhp51-dependent recombinational repair|HDR|homology-directed repair|homologous recombinational repair|HRR|Rad51-dependent recombinational repair GO:0016924 biological_process owl:Class GO:0140125 biolink:NamedThing thiamine import across plasma membrane The directed movement of thiamine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2017-10-25T11:09:23Z biological_process owl:Class GO:0098739 biolink:NamedThing import across plasma membrane The directed movement of some substance from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl uptake biological_process owl:Class GO:0046066 biolink:NamedThing dGDP metabolic process The chemical reactions and pathways involving dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dGDP metabolism biological_process owl:Class GO:0009182 biolink:NamedThing purine deoxyribonucleoside diphosphate metabolic process The chemical reactions and pathways involving purine deoxyribonucleoside diphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside diphosphate metabolism biological_process owl:Class GO:0018887 biolink:NamedThing 4-carboxy-4'-sulfoazobenzene metabolic process The chemical reactions and pathways involving 4-carboxy-4'-sulfoazobenzene, a sulfonated azo compound synthesized by nitro-amine condensation from sulfanilic acid and 4-nitrobenzoic acid. tmpzr1t_l9r_go_relaxed.owl 4-carboxy-4'-sulphoazobenzene metabolism|4-carboxy-4'-sulphoazobenzene metabolic process|4-carboxy-4'-sulfoazobenzene metabolism UM-BBD_pathwayID:csab biological_process owl:Class GO:0006807 biolink:NamedThing nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. tmpzr1t_l9r_go_relaxed.owl nitrogen compound metabolism biological_process owl:Class GO:0004602 biolink:NamedThing glutathione peroxidase activity Catalysis of the reaction: 2 glutathione + hydrogen peroxide = oxidized glutathione + 2 H2O. tmpzr1t_l9r_go_relaxed.owl reduced glutathione peroxidase activity|selenium-glutathione peroxidase activity|glutathione:hydrogen-peroxide oxidoreductase activity|GSH peroxidase activity|non-selenium glutathione peroxidase activity MetaCyc:GLUTATHIONE-PEROXIDASE-RXN|Reactome:R-HSA-71676|Reactome:R-HSA-2161999|EC:1.11.1.9|Reactome:R-HSA-2161946|Reactome:R-HSA-3343700|Reactome:R-HSA-3323013|Reactome:R-HSA-2161959|RHEA:16833|Reactome:R-HSA-6799695|Reactome:R-HSA-3341277|Reactome:R-HSA-3341397|Reactome:R-HSA-2161791 GO:0016224 molecular_function owl:Class GO:0004601 biolink:NamedThing peroxidase activity Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl donor:hydrogen-peroxide oxidoreductase activity|pyrocatechol peroxidase|verdoperoxidase|oxyperoxidase activity|lactoperoxidase activity|bacterial catalase-peroxidase activity|MPO|protoheme peroxidase|heme peroxidase|extensin peroxidase|peroxidase reaction|scopoletin peroxidase|eosinophil peroxidase activity|secretory plant peroxidase activity|thiocyanate peroxidase|japanese radish peroxidase|guaiacol peroxidase|myeloperoxidase activity|horseradish peroxidase (HRP) Reactome:R-HSA-209840|Reactome:R-HSA-140359|Reactome:R-HSA-1222346|Reactome:R-HSA-3341296|Reactome:R-HSA-6789031|Reactome:R-HSA-2309773|Reactome:R-HSA-209815|Reactome:R-HSA-209973|Reactome:R-HSA-350901|Reactome:R-HSA-8855490|EC:1.11.1.-|Reactome:R-HSA-2559639|Reactome:R-HSA-6789126|KEGG_REACTION:R03532|Reactome:R-HSA-5631885|Reactome:R-HSA-209925|Reactome:R-HSA-8933635|MetaCyc:PEROXID-RXN GO:0016693|GO:0016686|GO:0016685|GO:0016687 molecular_function owl:Class GO:0051152 biolink:NamedThing positive regulation of smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of smooth muscle cell differentiation|up-regulation of smooth muscle cell differentiation|activation of smooth muscle cell differentiation|up regulation of smooth muscle cell differentiation|upregulation of smooth muscle cell differentiation biological_process owl:Class GO:0098516 biolink:NamedThing detection of high humidity The series of events in which high humidity is detected and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:26:47Z biological_process owl:Class GO:0098513 biolink:NamedThing detection of humidity The series of events in which a humidity stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:11:13Z biological_process owl:Class GO:1900603 biolink:NamedThing tensidol A metabolic process The chemical reactions and pathways involving tensidol A. tmpzr1t_l9r_go_relaxed.owl tensidol A metabolism di 2012-05-15T06:57:47Z biological_process owl:Class GO:1904322 biolink:NamedThing cellular response to forskolin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a forskolin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T19:01:33Z biological_process owl:Class GO:1901655 biolink:NamedThing cellular response to ketone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ketone stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-20T10:55:51Z biological_process owl:Class GO:0090664 biolink:NamedThing response to high population density Any process that results in a change in state or activity of a cell or a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a higher than normal number of multicellular organisms living per unit area. tmpzr1t_l9r_go_relaxed.owl response to crowding tb 2015-10-21T16:00:30Z biological_process owl:Class GO:0039516 biolink:NamedThing modulation by virus of host catalytic activity The process in which a virus effects a change in host enzyme activity. tmpzr1t_l9r_go_relaxed.owl modulation of catalytic activity of host by virus|regulation by virus of host catalytic activity|regulation of host catalytic activity by virus bf 2011-06-16T02:59:35Z biological_process owl:Class GO:0050371 biolink:NamedThing tyrosine phenol-lyase activity Catalysis of the reaction: L-tyrosine + H(2)O = NH(4)(+) + phenol + pyruvate. tmpzr1t_l9r_go_relaxed.owl beta-tyrosinase activity|L-tyrosine phenol-lyase (deaminating; pyruvate-forming)|L-tyrosine phenol-lyase (deaminating) RHEA:21704|KEGG_REACTION:R00728|MetaCyc:TYROSINE-PHENOL-LYASE-RXN|EC:4.1.99.2 molecular_function owl:Class GO:0018761 biolink:NamedThing bromoxynil nitrilase activity Catalysis of the reaction: 3,5-dibromo-4-hydroxybenzonitrile + 2 H(2)O = 3,5-dibromo-4-hydroxybenzoate + NH(4)(+). Involved in the bacterial degradation of the herbicide bromoxynil. tmpzr1t_l9r_go_relaxed.owl bromoxynil-specific nitrilase activity|3,5-dibromo-4-hydroxybenzonitrile aminohydrolase activity RHEA:22100|KEGG_REACTION:R04349|MetaCyc:3.5.5.6-RXN|EC:3.5.5.6|UM-BBD_enzymeID:e0357 molecular_function owl:Class GO:0000257 biolink:NamedThing nitrilase activity Catalysis of the reaction: a nitrile + H2O = a carboxylate + NH3. Acts on a wide range of aromatic nitriles including (indole-3-yl)-acetonitrile and some aliphatic nitriles, and on the corresponding acid amides. tmpzr1t_l9r_go_relaxed.owl benzonitrilase activity|nitrile aminohydrolase activity|acetonitrilase activity MetaCyc:3.5.5.1-RXN|KEGG_REACTION:R00540|UM-BBD_enzymeID:e0283|EC:3.5.5.1|RHEA:21724 molecular_function owl:Class GO:1905162 biolink:NamedThing regulation of phagosome maturation Any process that modulates the frequency, rate or extent of phagosome maturation. tmpzr1t_l9r_go_relaxed.owl bf 2016-04-25T16:28:03Z biological_process owl:Class GO:1905919 biolink:NamedThing negative regulation of CoA-transferase activity Any process that stops, prevents or reduces the frequency, rate or extent of CoA-transferase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of CoA-transferase activity|downregulation of CoA-transferase activity|inhibition of CoA-transferase activity|down-regulation of CoA-transferase activity bc 2017-02-08T13:00:56Z biological_process owl:Class GO:0071137 biolink:NamedThing alphaV-beta3 integrin-CD98 complex A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface antigen CD98. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-SLC3A2 complex mah 2009-11-13T02:29:59Z cellular_component owl:Class GO:1903762 biolink:NamedThing positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization Any process that activates or increases the frequency, rate or extent of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl up regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|positive regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|upregulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|positive regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|up-regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|positive regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|upregulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|up regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|activation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|activation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|up regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|activation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|positive regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|up regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|activation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|upregulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|upregulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|up-regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|up-regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|up regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|up-regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|activation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|upregulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|up-regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential rl 2014-12-19T12:02:18Z biological_process owl:Class GO:1905026 biolink:NamedThing positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of membrane repolarization during ventricular cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl up regulation of electrocardiogram T wave|activation of ventricular repolarization|upregulation of electrocardiogram T wave|up regulation of ventricular repolarization|up-regulation of regulation of ventricular cardiac muscle repolarization|up regulation of regulation of ventricular cardiac muscle repolarization|up-regulation of ventricular repolarization|upregulation of membrane repolarization during ventricular cardiac muscle cell action potential|up regulation of membrane repolarization during ventricular cardiac muscle cell action potential|positive regulation of regulation of ventricular cardiac muscle repolarization|activation of membrane repolarization during ventricular cardiac muscle cell action potential|up-regulation of electrocardiogram T wave|activation of electrocardiogram T wave|up-regulation of membrane repolarization during ventricular cardiac muscle cell action potential|positive regulation of electrocardiogram T wave|positive regulation of ventricular repolarization|upregulation of ventricular repolarization|activation of regulation of ventricular cardiac muscle repolarization|upregulation of regulation of ventricular cardiac muscle repolarization rph 2016-03-04T11:19:21Z biological_process owl:Class GO:0046951 biolink:NamedThing ketone body biosynthetic process The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl ketone body formation|ketone body anabolism|ketone body biosynthesis|ketone body synthesis biological_process owl:Class GO:1902224 biolink:NamedThing ketone body metabolic process The chemical reactions and pathways involving ketone body. tmpzr1t_l9r_go_relaxed.owl ketone body metabolism pr 2013-06-13T10:37:54Z biological_process owl:Class GO:0050926 biolink:NamedThing regulation of positive chemotaxis Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010940 biolink:NamedThing positive regulation of necrotic cell death Any process that increases the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010942 biolink:NamedThing positive regulation of cell death Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140426 biolink:NamedThing PAMP-triggered immunity signalling pathway Any series of molecular signals generated as a consequence of a pattern recognition receptor (PRR) binding to one of its physiological ligands to activate a plant innate immune response. PAMP-triggered immunity PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species. tmpzr1t_l9r_go_relaxed.owl pathogen-associated molecular pattern signalling|PTI signalling|MAMP-triggered immunity signalling https://github.com/geneontology/go-ontology/issues/18588 pg 2020-02-11T11:08:57Z biological_process owl:Class GO:0002758 biolink:NamedThing innate immune response-activating signal transduction A series of molecular signals generated as a consequence of a pathogen or microbial effector binding to a plant 'resistance-gene' receptor to activate a plant immune response, usually plant-type hypersensitive response. tmpzr1t_l9r_go_relaxed.owl defense response signaling pathway, resistance gene-independent|defence response signaling pathway, resistance gene-independent|defence response signalling pathway, resistance gene-independent|defence response signalling pathway, resistance gene-dependent|effector triggered immunity|defense response signalling pathway, resistance gene-dependent|effector-triggered immunity|defense response signaling pathway, resistance gene-dependent|effector-triggered immune signaling|defence response signaling pathway, resistance gene-dependent https://github.com/geneontology/go-ontology/issues/18587|https://github.com/geneontology/go-ontology/issues/18586|https://github.com/geneontology/go-ontology/issues/18733|https://github.com/geneontology/go-ontology/issues/19850 GO:0010204|GO:0009870 biological_process owl:Class GO:0033869 biolink:NamedThing nucleoside bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside bisphosphate breakdown|nucleoside bisphosphate degradation|nucleoside bisphosphate catabolism biological_process owl:Class GO:1901292 biolink:NamedThing nucleoside phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate. tmpzr1t_l9r_go_relaxed.owl nucleoside phosphate breakdown|nucleoside phosphate catabolism|nucleoside phosphate degradation bf 2012-08-20T12:33:25Z biological_process owl:Class GO:0051550 biolink:NamedThing aurone metabolic process The chemical reactions and pathways involving aurones, a series of plant flavonoids that provide a yellow colour to flowers. They have the basic skeletal structure of two benzene rings joined by a linear C3 chain (C6-C3-C6). Aurones exist mostly as 6-O-glucosides. tmpzr1t_l9r_go_relaxed.owl aurone metabolism|benzalcoumaran-3-one metabolic process|benzalcoumaran-3-one metabolism biological_process owl:Class GO:1902290 biolink:NamedThing positive regulation of defense response to oomycetes Any process that activates or increases the frequency, rate or extent of defense response to oomycetes. tmpzr1t_l9r_go_relaxed.owl activation of defense response to oomycetes|up regulation of defense response to oomycetes|up-regulation of defense response to oomycetes|upregulation of defense response to oomycetes ms 2013-07-09T13:45:43Z biological_process owl:Class GO:0031349 biolink:NamedThing positive regulation of defense response Any process that activates or increases the frequency, rate or extent of a defense response. tmpzr1t_l9r_go_relaxed.owl stimulation of defense response|up regulation of defense response|up-regulation of defense response|upregulation of defense response|activation of defense response biological_process owl:Class GO:2000417 biolink:NamedThing negative regulation of eosinophil migration Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:43:52Z biological_process owl:Class GO:1900790 biolink:NamedThing pseurotin A biosynthetic process The chemical reactions and pathways resulting in the formation of pseurotin A. tmpzr1t_l9r_go_relaxed.owl pseurotin A anabolism|Pseurotin synthesis|pseurotin A formation|pseurotin A synthesis|Pseurotin anabolism|Pseurotin formation|Pseurotin biosynthesis|Pseurotin biosynthetic process|pseurotin A biosynthesis di 2012-06-04T09:37:49Z biological_process owl:Class GO:1905187 biolink:NamedThing negative regulation of metaphase/anaphase transition of meiosis I Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of meiosis I. tmpzr1t_l9r_go_relaxed.owl vw 2016-05-10T16:32:11Z biological_process owl:Class GO:1905186 biolink:NamedThing regulation of metaphase/anaphase transition of meiosis I Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of meiosis I. tmpzr1t_l9r_go_relaxed.owl regulation of meiosis I metaphase/anaphase transition|regulation of first meiotic metaphase/anaphase transition vw 2016-05-10T16:32:03Z biological_process owl:Class GO:1903614 biolink:NamedThing negative regulation of protein tyrosine phosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of protein tyrosine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of PTP-phosphatase activity|inhibition of protein-tyrosine-phosphatase activity|down regulation of phosphotyrosine phosphatase activity|negative regulation of phosphoprotein phosphatase (phosphotyrosine) activity|inhibition of PTP-phosphatase activity|inhibition of tyrosine O-phosphate phosphatase activity|negative regulation of [phosphotyrosine]protein phosphatase activity|down-regulation of phosphoprotein phosphatase (phosphotyrosine) activity|inhibition of protein tyrosine phosphatase activity|negative regulation of phosphotyrosine phosphatase activity|inhibition of [phosphotyrosine]protein phosphatase activity|down-regulation of phosphotyrosine protein phosphatase activity|down regulation of protein-tyrosine-phosphate phosphohydrolase activity|down-regulation of phosphotyrosylprotein phosphatase activity|negative regulation of protein phosphotyrosine phosphatase activity|inhibition of phosphotyrosine phosphatase activity|negative regulation of tyrosine O-phosphate phosphatase activity|negative regulation of phosphotyrosine protein phosphatase activity|down regulation of protein tyrosine phosphatase activity|downregulation of phosphotyrosylprotein phosphatase activity|down-regulation of PTP-phosphatase activity|down regulation of protein phosphotyrosine phosphatase activity|downregulation of phosphoprotein phosphatase (phosphotyrosine) activity|down regulation of phosphotyrosylprotein phosphatase activity|down regulation of PPT-phosphatase activity|downregulation of protein phosphotyrosine phosphatase activity|down regulation of phosphotyrosine protein phosphatase activity|negative regulation of protein-tyrosine-phosphate phosphohydrolase activity|down-regulation of protein phosphotyrosine phosphatase activity|down regulation of PTP-phosphatase activity|downregulation of phosphotyrosine phosphatase activity|inhibition of protein phosphotyrosine phosphatase activity|inhibition of tyrosylprotein phosphatase activity|inhibition of phosphotyrosine protein phosphatase activity|down regulation of phosphoprotein phosphatase (phosphotyrosine) activity|downregulation of protein tyrosine phosphatase activity|downregulation of tyrosine O-phosphate phosphatase activity|inhibition of PPT-phosphatase activity|negative regulation of phosphotyrosylprotein phosphatase activity|negative regulation of PTPase activity|down-regulation of phosphotyrosine phosphatase activity|inhibition of PTPase activity|downregulation of [phosphotyrosine]protein phosphatase activity|downregulation of protein-tyrosine-phosphatase activity|inhibition of phosphotyrosine histone phosphatase activity|down-regulation of [phosphotyrosine]protein phosphatase activity|down regulation of tyrosylprotein phosphatase activity|down regulation of phosphotyrosine histone phosphatase activity|down-regulation of tyrosine O-phosphate phosphatase activity|down regulation of tyrosine O-phosphate phosphatase activity|negative regulation of tyrosylprotein phosphatase activity|inhibition of protein-tyrosine-phosphate phosphohydrolase activity|down-regulation of protein-tyrosine-phosphatase activity|down regulation of [phosphotyrosine]protein phosphatase activity|downregulation of PPT-phosphatase activity|down-regulation of tyrosylprotein phosphatase activity|down-regulation of PTPase activity|down regulation of protein-tyrosine-phosphatase activity|downregulation of PTPase activity|downregulation of tyrosylprotein phosphatase activity|down-regulation of PPT-phosphatase activity|inhibition of phosphoprotein phosphatase (phosphotyrosine) activity|downregulation of PTP-phosphatase activity|down-regulation of phosphotyrosine histone phosphatase activity|down-regulation of protein tyrosine phosphatase activity|down-regulation of protein-tyrosine-phosphate phosphohydrolase activity|negative regulation of phosphotyrosine histone phosphatase activity|negative regulation of PPT-phosphatase activity|negative regulation of protein-tyrosine-phosphatase activity|downregulation of protein-tyrosine-phosphate phosphohydrolase activity|inhibition of phosphotyrosylprotein phosphatase activity|downregulation of phosphotyrosine protein phosphatase activity|downregulation of phosphotyrosine histone phosphatase activity|down regulation of PTPase activity sl 2014-11-18T01:11:46Z biological_process owl:Class GO:0032515 biolink:NamedThing negative regulation of phosphoprotein phosphatase activity Any process that stops or reduces the activity of a phosphoprotein phosphatase. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein phosphatase type 2A activity|down-regulation of protein phosphatase type 2A activity|downregulation of phosphoprotein phosphatase activity|down regulation of protein phosphatase 2 activity|downregulation of protein phosphatase 2 activity|regulation of protein phosphatase 3 activity|down-regulation of phosphoprotein phosphatase activity|downregulation of protein phosphatase 3 activity|downregulation of protein phosphatase type 2B activity|negative regulation of protein phosphatase type 2B activity|down regulation of phosphoprotein phosphatase activity|downregulation of protein phosphatase type 2A activity|down regulation of protein phosphatase type 2B activity|inhibition of phosphoprotein phosphatase activity|downregulation of calcineurin activity|inhibition of protein phosphatase type 2B activity|down-regulation of protein phosphatase type 2B activity|down regulation of calcineurin activity|inhibition of protein phosphatase 3 activity|negative regulation of calcineurin activity|inhibition of protein phosphatase type 2A activity|down regulation of protein phosphatase type 2A activity|inhibition of calcineurin activity|inhibition of protein phosphatase 2 activity|down regulation of protein phosphatase 3 activity|negative regulation of protein phosphatase 2 activity GO:0032513|GO:0034048 biological_process owl:Class GO:2000694 biolink:NamedThing regulation of phragmoplast microtubule organization Any process that modulates the frequency, rate or extent of phragmoplast microtubule organization. tmpzr1t_l9r_go_relaxed.owl regulation of phragmoplast microtubule cytoskeleton organization|regulation of phragmoplast microtubule organisation tb 2011-05-13T09:32:27Z biological_process owl:Class GO:0016751 biolink:NamedThing S-succinyltransferase activity Catalysis of the transfer of a succinyl group to a sulfur atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016417 biolink:NamedThing S-acyltransferase activity Catalysis of the transfer of an acyl group to a sulfur atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033219 biolink:NamedThing urea binding Binding to urea, a water-soluble carboxamide with the structure H2N-CO-NH2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033218 biolink:NamedThing amide binding Binding to an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051401 biolink:NamedThing CH domain binding Binding to a calponin homology protein domain, a domain of 100 residues that occurs in signaling and cytoskeletal proteins. tmpzr1t_l9r_go_relaxed.owl calponin homology domain binding molecular_function owl:Class GO:1904986 biolink:NamedThing positive regulation of quinolinate biosynthetic process Any process that activates or increases the frequency, rate or extent of quinolinate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of quinolinate biosynthesis|activation of quinolinate synthesis|up-regulation of quinolinate formation|up regulation of quinolinate biosynthesis|positive regulation of quinolinate synthesis|up regulation of quinolinate anabolism|up-regulation of quinolinate biosynthesis|up-regulation of quinolinate biosynthetic process|activation of quinolinate biosynthetic process|up regulation of quinolinate formation|upregulation of quinolinate anabolism|positive regulation of quinolinate anabolism|upregulation of quinolinate biosynthetic process|positive regulation of quinolinate biosynthesis|up-regulation of quinolinate anabolism|upregulation of quinolinate formation|up-regulation of quinolinate synthesis|positive regulation of quinolinate formation|up regulation of quinolinate synthesis|up regulation of quinolinate biosynthetic process|upregulation of quinolinate synthesis|activation of quinolinate anabolism|upregulation of quinolinate biosynthesis|activation of quinolinate formation bf 2016-02-29T15:54:29Z biological_process owl:Class GO:0044787 biolink:NamedThing bacterial-type DNA replication The DNA-dependent DNA replication, exemplified by prokaryotes, that occurs as part of the cell cycle. Prokaryotic DNA replication is bi-directional and originates at a single origin of replication on the circular genome. tmpzr1t_l9r_go_relaxed.owl bacterial-type cell cycle DNA replication jl 2013-05-02T15:54:16Z biological_process owl:Class GO:0031348 biolink:NamedThing negative regulation of defense response Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. tmpzr1t_l9r_go_relaxed.owl down-regulation of defense response|inhibition of defense response|down regulation of defense response|downregulation of defense response biological_process owl:Class GO:0034997 biolink:NamedThing alphav-beta5 integrin-vitronectin complex A protein complex that comprises one integrin alphav subunit, one integrin beta5 subunit, and vitronectin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB5-VTN complex cellular_component owl:Class GO:0021813 biolink:NamedThing cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration The interaction between two cells that modulates the association of a neuronal cell and a glial cell involved in glial-mediated radial cell migration in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0098742 biolink:NamedThing cell-cell adhesion via plasma-membrane adhesion molecules The attachment of one cell to another cell via adhesion molecules that are at least partially embedded in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039619 biolink:NamedThing T=4 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:808 bf 2012-07-18T02:15:14Z cellular_component owl:Class GO:0019030 biolink:NamedThing icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form an icosahedron, a solid with 20 faces and 12 vertices. Icosahedral capsids have 12 pentamers plus 10(T-1) hexamers, where T is the triangulation number. Tobacco satellite necrosis virus has such a capsid structure. tmpzr1t_l9r_go_relaxed.owl quasispherical viral capsid cellular_component owl:Class GO:0102070 biolink:NamedThing 18-hydroxyoleate peroxygenase activity Catalysis of the reaction: 18-hydroxyoleate + a lipid hydroperoxide <=> 9,10-epoxy-18-hydroxystearate + a lipid alcohol. tmpzr1t_l9r_go_relaxed.owl EC:1.11.2.3|MetaCyc:RXN-1064 molecular_function owl:Class GO:0016684 biolink:NamedThing oxidoreductase activity, acting on peroxide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which the peroxide group acts as a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.11.-.- molecular_function owl:Class GO:0030621 biolink:NamedThing U4 snRNA binding Binding to a U4 small nuclear RNA (U4 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060492 biolink:NamedThing lung induction The close range interaction of two or more cells or tissues that causes the cells of the foregut to change their fates and specify the development of the lung. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001759 biolink:NamedThing organ induction The interaction of two or more cells or tissues that causes them to change their fates and specify the development of an organ. tmpzr1t_l9r_go_relaxed.owl induction of an organ biological_process owl:Class GO:0103016 biolink:NamedThing tRNA-specific 2-thiouridylase activity Catalysis of the reaction: ATP + H+ + a tRNA uridine34 + a [TusE sulfur carrier protein]-S-sulfanylcysteine = AMP + diphosphoric acid + a tRNA 2-thiouridine34 + a [TusE sulfur carrier protein]-L-cysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-2023 molecular_function owl:Class GO:0070050 biolink:NamedThing neuron cellular homeostasis The cellular homeostatic process that preserves a neuron in a stable, differentiated functional and structural state. tmpzr1t_l9r_go_relaxed.owl neuron maintenance biological_process owl:Class GO:0019743 biolink:NamedThing hopanoid catabolic process The chemical reactions and pathways resulting in the breakdown of hopanoids, pentacyclic sterol-like compounds based on the hopane nucleus. tmpzr1t_l9r_go_relaxed.owl hopanoid degradation|hopanoid breakdown|hopanoid catabolism biological_process owl:Class GO:0016105 biolink:NamedThing triterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of triterpenoid compounds, terpenoids with six isoprene units. tmpzr1t_l9r_go_relaxed.owl triterpene catabolism|triterpenoid catabolism|triterpene catabolic process|triterpenoid breakdown|triterpenoid degradation biological_process owl:Class GO:0014004 biolink:NamedThing microglia differentiation The process in which a relatively unspecialized cell acquires specialized features of a microglial cell. Microglia are glial cells that act as the immune cells of the central nervous system. They form part of the supporting structure of this system. tmpzr1t_l9r_go_relaxed.owl microglial cell differentiation biological_process owl:Class GO:0030225 biolink:NamedThing macrophage differentiation The process in which a relatively unspecialized monocyte acquires the specialized features of a macrophage. tmpzr1t_l9r_go_relaxed.owl macrophage cell differentiation biological_process owl:Class GO:0046863 biolink:NamedThing ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity Increases the activity of rubisco by the removal of otherwise inhibitory sugar phosphates: RuBP, and in some plants, 2-carboxyarabinitol 1-phosphate. tmpzr1t_l9r_go_relaxed.owl rubisco activator|ribulose-bisphosphate carboxylase activase activity|rubisco activase activity|ribulose-1,5-bisphosphate carboxylase/oxygenase activase activity See also the molecular function term 'ribulose-bisphosphate carboxylase activity ; GO:0016984'. GO:0018236 molecular_function owl:Class GO:0008047 biolink:NamedThing enzyme activator activity Binds to and increases the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl metalloenzyme activator activity This term should only be used in cases when the regulator directly interacts with the enzyme. GO:0010577 molecular_function owl:Class GO:0043194 biolink:NamedThing axon initial segment Portion of the axon proximal to the neuronal cell body, at the level of the axon hillock. The action potentials that propagate along the axon are generated at the level of this initial segment. tmpzr1t_l9r_go_relaxed.owl initial segment NIF_Subcellular:sao256000789 cellular_component owl:Class GO:0071313 biolink:NamedThing cellular response to caffeine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:52:51Z biological_process owl:Class GO:0071415 biolink:NamedThing cellular response to purine-containing compound Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to purine mah 2009-12-14T03:12:20Z biological_process owl:Class GO:0001970 biolink:NamedThing positive regulation of activation of membrane attack complex Any process that activates, maintains or increases the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of activation of the terminal complement cascade|positive regulation of MAC assembly|positive regulation of MAC formation|positive regulation of activation of TCC|positive regulation of membrane attack complex assembly|activation of activation of membrane attack complex|positive regulation of activation of terminal complement complex|upregulation of activation of membrane attack complex|up regulation of activation of membrane attack complex|positive regulation of activation of MAC|stimulation of activation of membrane attack complex|positive regulation of membrane attack complex formation|up-regulation of activation of membrane attack complex biological_process owl:Class GO:0062184 biolink:NamedThing testosterone 16-beta-hydroxylase activity Catalysis of the reaction: O2 + reduced [NADPH--hemoprotein reductase] + testosterone = 16beta,17beta-dihydroxyandrost-4-en-3-one + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:46304 dph 2019-11-26T18:43:43Z molecular_function owl:Class GO:0004497 biolink:NamedThing monooxygenase activity Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. tmpzr1t_l9r_go_relaxed.owl hydroxylase activity Reactome:R-HSA-76472|Reactome:R-HSA-6786239|Reactome:R-HSA-211924|Reactome:R-HSA-5423678|Reactome:R-HSA-5602272|Reactome:R-HSA-76354|Reactome:R-HSA-9027044|Reactome:R-HSA-76386|Reactome:R-HSA-5602242|Reactome:R-HSA-211991|Reactome:R-HSA-5423672|Reactome:R-HSA-2161890|Reactome:R-HSA-2161899|Reactome:R-HSA-2162191|Reactome:R-HSA-212005|Reactome:R-HSA-76466|Reactome:R-HSA-76373|Reactome:R-HSA-9027043|Reactome:R-HSA-5663050|Reactome:R-HSA-2161814|Reactome:R-HSA-5605147|Reactome:R-HSA-76426|Reactome:R-HSA-8865107|Reactome:R-HSA-213175|Reactome:R-HSA-9027042|Reactome:R-HSA-76475|Reactome:R-HSA-211904|Reactome:R-HSA-9037761|Reactome:R-HSA-76397|Reactome:R-HSA-211988|Reactome:R-HSA-211910|Reactome:R-HSA-9027302|Reactome:R-HSA-2161940|Reactome:R-HSA-211951|Reactome:R-HSA-9018874|Reactome:R-HSA-5662692|Reactome:R-HSA-217258|Reactome:R-HSA-5423664|Reactome:R-HSA-211882|Reactome:R-HSA-76434|Reactome:R-HSA-143468|Reactome:R-HSA-211948|Reactome:R-HSA-76416|Reactome:R-HSA-76456|Reactome:R-HSA-5602295|Reactome:R-HSA-215526|Reactome:R-HSA-211959|Reactome:R-HSA-156526|Reactome:R-HSA-211919|Reactome:R-HSA-211929|Reactome:R-HSA-211962|Reactome:R-HSA-211968|Reactome:R-HSA-5662662|Reactome:R-HSA-5423647|Reactome:R-HSA-212004|Reactome:R-HSA-2161795|Reactome:R-HSA-9027321|Reactome:R-HSA-211960 molecular_function owl:Class GO:0071741 biolink:NamedThing IgD immunoglobulin complex, GPI-anchored A protein complex composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and bound via a GPI-anchor to the plasma membrane of B cells. tmpzr1t_l9r_go_relaxed.owl GPI-anchored IgD Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0071738 biolink:NamedThing IgD immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgD immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0032831 biolink:NamedThing positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells. tmpzr1t_l9r_go_relaxed.owl upregulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation|activation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|up-regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|up regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation|stimulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045591 biolink:NamedThing positive regulation of regulatory T cell differentiation Any process that activates or increases the frequency, rate or extent of differentiation of regulatory T cells. tmpzr1t_l9r_go_relaxed.owl positive regulation of suppressor T-cell differentiation|up regulation of regulatory T cell differentiation|positive regulation of regulatory T-lymphocyte differentiation|activation of regulatory T cell differentiation|stimulation of regulatory T cell differentiation|up-regulation of regulatory T cell differentiation|positive regulation of regulatory T cell development|positive regulation of regulatory T lymphocyte differentiation|positive regulation of suppressor T cell differentiation|positive regulation of regulatory T-cell differentiation|upregulation of regulatory T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0047116 biolink:NamedThing 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase activity Catalysis of the reaction: NAD+ + 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate = NADH + CO2 + catechol. tmpzr1t_l9r_go_relaxed.owl cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate:NAD(+) oxidoreductase activity|(1R,6R)-1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate:NAD+ oxidoreductase (decarboxylating)|2-hydro-1,2-dihydroxybenzoate dehydrogenase activity|dihydrodihydroxybenzoate dehydrogenase activity|3,5-cyclohexadiene-1,2-diol-1-carboxylate dehydrogenase activity|DHB dehydrogenase activity|cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate:NAD+ oxidoreductase activity|DHBDH activity|3,5-cyclohexadiene-1,2-diol-1-carboxylic acid dehydrogenase activity MetaCyc:1.3.1.25-RXN|RHEA:11560|EC:1.3.1.25 molecular_function owl:Class GO:0140567 biolink:NamedThing transmembrane protein dislocase activity The activity of removing a protein from a membrane, by binding to a transmembrane helical fragment of a tail-anchored protein and releasing it from the the hydrophobic region of one or both lipid bilayers. The reaction is driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl transmembrane helix dislocase https://github.com/geneontology/go-ontology/issues/20237|https://github.com/geneontology/go-ontology/issues/22209 RHEA:66168 pg 2020-12-15T07:13:21Z molecular_function owl:Class GO:0140657 biolink:NamedThing ATP-dependent activity A molecular function characterized by the coupling of ATP hydrolysis to other steps of a reaction mechanism to make the reaction energetically favorable, for example to catalyze a reaction or drive transport against a concentration gradient. tmpzr1t_l9r_go_relaxed.owl ATPase-dependent activity|ATP hydrolysis-dependent activity|ATPase activity, coupled|ATPase activity https://github.com/geneontology/go-ontology/issues/22371|https://github.com/geneontology/go-ontology/issues/21612 Note that this term represents a grouping class that includes all proteins that use ATP hydrolysis to drive a reaction; it is not meant to capture the ATP hydrolysis reaction itself. To annotate ATP hydrolysis, please use 'ATP hydrolysis activity ; GO:0016887'. pg 2021-06-15T07:35:06Z molecular_function owl:Class GO:0035331 biolink:NamedThing negative regulation of hippo signaling Any process that stops, prevents, or reduces the frequency, rate or extent of hippo signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of hippo signalling cascade|negative regulation of hippo signaling cascade|negative regulation of hippo signaling pathway bf 2010-02-26T10:54:19Z biological_process owl:Class GO:1901909 biolink:NamedThing diadenosine hexaphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of diadenosine hexaphosphate. tmpzr1t_l9r_go_relaxed.owl diadenosyl hexaphosphate breakdown|diadenosyl hexaphosphate catabolism|diadenosine hexaphosphate catabolism|diadenosyl hexaphosphate catabolic process|diadenosyl hexaphosphate degradation al 2013-02-13T13:50:44Z biological_process owl:Class GO:0015961 biolink:NamedThing diadenosine polyphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine polyphosphate breakdown|diadenosine polyphosphate catabolism|diadenosine polyphosphate degradation biological_process owl:Class GO:2000519 biolink:NamedThing positive regulation of T-helper 1 cell activation Any process that activates or increases the frequency, rate or extent of T-helper 1 cell activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th1 cell activation ebc 2011-03-22T10:40:31Z biological_process owl:Class GO:2000517 biolink:NamedThing regulation of T-helper 1 cell activation Any process that modulates the frequency, rate or extent of T-helper 1 cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of Th1 cell activation ebc 2011-03-22T10:40:19Z biological_process owl:Class GO:0102037 biolink:NamedThing 4-nitrotoluene monooxygenase activity Catalysis of the reaction: H+ + 4-nitrotoluene + NADH + O2 <=> 4-nitrobenzyl alcohol + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R361-RXN molecular_function owl:Class GO:0072157 biolink:NamedThing epithelial cell migration involved in distal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to distal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:33:33Z biological_process owl:Class GO:0007290 biolink:NamedThing spermatid nucleus elongation The change in shape of the spermatid nucleus from a spherical structure to an elongated organelle, during the latter part of spermatid differentiation. tmpzr1t_l9r_go_relaxed.owl spermatid nuclear elongation biological_process owl:Class GO:2000480 biolink:NamedThing negative regulation of cAMP-dependent protein kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of cAMP-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of PKA|negative regulation of protein kinase A activity|negative regulation of 3',5'-cAMP-dependent protein kinase activity|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity|negative regulation of PKA C|negative regulation of STK22|negative regulation of AMPK|negative regulation of cyclic AMP-dependent protein kinase activity|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity|negative regulation of 3',5' cAMP-dependent protein kinase activity|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity yaf 2011-03-10T11:13:45Z biological_process owl:Class GO:2000479 biolink:NamedThing regulation of cAMP-dependent protein kinase activity Any process that modulates the frequency, rate or extent of cAMP-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP:protein phosphotransferase (cAMP-dependent) activity|regulation of PKA C|regulation of 3',5'-cAMP-dependent protein kinase activity|regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity|regulation of protein kinase A activity|regulation of 3',5' cAMP-dependent protein kinase activity|regulation of AMPK|regulation of cyclic AMP-dependent protein kinase activity|regulation of cAMP-dependent protein kinase, intrinsic catalyst activity|regulation of PKA|regulation of STK22 yaf 2011-03-10T11:13:01Z biological_process owl:Class GO:0032951 biolink:NamedThing regulation of beta-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways relusting in the formation of beta-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of beta-glucan biosynthesis|regulation of beta-glucan anabolism|regulation of beta-glucan synthesis|regulation of beta-glucan formation biological_process owl:Class GO:0010962 biolink:NamedThing regulation of glucan biosynthetic process Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-11T12:17:53Z biological_process owl:Class GO:2000992 biolink:NamedThing negative regulation of galactomannan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of galactomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl tt 2011-08-08T03:16:00Z biological_process owl:Class GO:1990876 biolink:NamedThing cytoplasmic side of nuclear pore The side of the nuclear pore complex (NPC) that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cytoplasmic side of nucleopore|cytoplasmic side of NPC|cytoplasmic side of nuclear pore complex sl 2015-10-01T21:47:54Z cellular_component owl:Class GO:0031329 biolink:NamedThing regulation of cellular catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl regulation of cellular degradation|regulation of cellular catabolism|regulation of cellular breakdown biological_process owl:Class GO:1904128 biolink:NamedThing negative regulation of convergent extension involved in somitogenesis Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of convergent extension involved in somitogenesis|down-regulation of convergent extension involved in somitogenesis|inhibition of convergent extension involved in somitogenesis|down regulation of convergent extension involved in somitogenesis dph 2015-04-10T21:13:10Z biological_process owl:Class GO:1904127 biolink:NamedThing regulation of convergent extension involved in somitogenesis Any process that modulates the frequency, rate or extent of convergent extension involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:13:04Z biological_process owl:Class GO:0032821 biolink:NamedThing negative regulation of natural killer cell proliferation involved in immune response Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of natural killer cell proliferation during immune response|downregulation of natural killer cell proliferation during immune response|down regulation of natural killer cell proliferation during immune response|inhibition of natural killer cell proliferation during immune response|down-regulation of natural killer cell proliferation during immune response|negative regulation of NK cell proliferation during immune response biological_process owl:Class GO:0002698 biolink:NamedThing negative regulation of immune effector process Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune effector process. tmpzr1t_l9r_go_relaxed.owl down regulation of immune effector process|inhibition of immune effector process|downregulation of immune effector process|down-regulation of immune effector process biological_process owl:Class GO:0098711 biolink:NamedThing iron ion import across plasma membrane The directed movement of iron ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl iron import into cell|iron ion import into cell|ferrous ion import into cell|ferrous iron import across plasma membrane|ferrous iron import into cell pr 2012-12-20T08:29:00Z GO:0097460|GO:0098707|GO:0097459 biological_process owl:Class GO:0071357 biolink:NamedThing cellular response to type I interferon Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type I interferon stimulus. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl cellular response to type I IFN mah 2009-12-11T02:51:47Z biological_process owl:Class GO:0002552 biolink:NamedThing serotonin secretion by mast cell The regulated release of serotonin by a mast cell or group of mast cells. tmpzr1t_l9r_go_relaxed.owl serotonin release by mast cell biological_process owl:Class GO:0002442 biolink:NamedThing serotonin secretion involved in inflammatory response The regulated release of serotonin by a cell as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl serotonin release involved in inflammatory response|serotonin secretion involved in acute inflammatory response biological_process owl:Class GO:0071977 biolink:NamedThing bacterial-type flagellum-dependent swimming motility Bacterial-type flagellum-dependent cell motility that results in the smooth movement of a cell through a liquid medium. tmpzr1t_l9r_go_relaxed.owl bacterial-type flagellum-mediated cell swimming|bacterial-type flagellar swimming motility mah 2010-10-21T02:58:51Z biological_process owl:Class GO:0071975 biolink:NamedThing cell swimming Cell motility that results in the smooth movement of a cell through a liquid medium. tmpzr1t_l9r_go_relaxed.owl cell swimming motility mah 2010-10-21T02:31:34Z biological_process owl:Class GO:1900659 biolink:NamedThing negative regulation of emericellamide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of emericellamide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of emericellamide biosynthesis|negative regulation of emericellamide synthesis|down regulation of emericellamide biosynthetic process|downregulation of emericellamide biosynthetic process|downregulation of emericellamide synthesis|down regulation of emericellamide formation|inhibition of emericellamide biosynthesis|negative regulation of emericellamide biosynthesis|down-regulation of emericellamide formation|down regulation of emericellamide anabolism|negative regulation of emericellamide formation|downregulation of emericellamide formation|down-regulation of emericellamide biosynthetic process|down regulation of emericellamide synthesis|downregulation of emericellamide biosynthesis|down-regulation of emericellamide anabolism|down-regulation of emericellamide synthesis|downregulation of emericellamide anabolism|inhibition of emericellamide anabolism|down regulation of emericellamide biosynthesis|inhibition of emericellamide formation|inhibition of emericellamide synthesis|inhibition of emericellamide biosynthetic process|negative regulation of emericellamide anabolism di 2012-05-22T04:10:44Z biological_process owl:Class GO:0034249 biolink:NamedThing negative regulation of cellular amide metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amides. tmpzr1t_l9r_go_relaxed.owl negative regulation of amide metabolism biological_process owl:Class GO:0034697 biolink:NamedThing response to prostaglandin I Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin I stimulus. tmpzr1t_l9r_go_relaxed.owl response to prostaglandin I stimulus biological_process owl:Class GO:0061922 biolink:NamedThing histone propionyltransferase activity Catalysis of the reaction: propionyl-CoA + histone = CoA + propionyl-histone. tmpzr1t_l9r_go_relaxed.owl dph 2017-08-02T13:38:50Z molecular_function owl:Class GO:0061920 biolink:NamedThing protein propionyltransferase activity Catalysis of the reaction: propionyl-CoA + lysine in peptide = CoA + N-propionyl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl dph 2017-08-02T13:35:22Z molecular_function owl:Class GO:1902742 biolink:NamedThing apoptotic process involved in development Any apoptotic process that is involved in anatomical structure development. tmpzr1t_l9r_go_relaxed.owl programmed cell death by apoptosis involved in development of an anatomical structure|induction of apoptosis involved in development of an anatomical structure|type I programmed cell death involved in anatomical structure development|apoptotic cell death involved in development of an anatomical structure|apoptotic process involved in anatomical structure development|apoptotic programmed cell death involved in development of an anatomical structure|type I programmed cell death involved in development of an anatomical structure|activation of apoptosis involved in development of an anatomical structure|apoptotic program involved in development of an anatomical structure|programmed cell death by apoptosis involved in anatomical structure development|signaling (initiator) caspase activity involved in development of an anatomical structure|apoptosis involved in anatomical structure development|apoptosis signaling involved in anatomical structure development|activation of apoptosis involved in anatomical structure development|apoptotic program involved in anatomical structure development|apoptosis involved in development of an anatomical structure|apoptotic programmed cell death involved in anatomical structure development|apoptotic cell death involved in anatomical structure development|induction of apoptosis involved in anatomical structure development|commitment to apoptosis involved in anatomical structure development|apoptosis activator activity involved in development of an anatomical structure|commitment to apoptosis involved in development of an anatomical structure|induction of apoptosis by p53 involved in development of an anatomical structure|apoptotic process involved in development of an anatomical structure|apoptosis activator activity involved in anatomical structure development|induction of apoptosis by p53 involved in anatomical structure development|apoptosis signaling involved in development of an anatomical structure|signaling (initiator) caspase activity involved in anatomical structure development pr 2014-02-28T13:09:43Z biological_process owl:Class GO:1903633 biolink:NamedThing regulation of leucine-tRNA ligase activity Any process that modulates the frequency, rate or extent of leucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of leucyl-transfer RNA synthetase activity|regulation of leucyl-transfer ribonucleic acid synthetase activity|regulation of leucyl-tRNA synthetase activity|regulation of leucine translase activity|regulation of L-leucine:tRNALeu ligase (AMP-forming)|regulation of leucyl-transfer ribonucleate synthetase activity|regulation of leucine-tRNA synthetase activity sl 2014-11-20T00:24:48Z biological_process owl:Class GO:1904579 biolink:NamedThing cellular response to thapsigargin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thapsigargin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T18:06:28Z biological_process owl:Class GO:0071550 biolink:NamedThing death-inducing signaling complex assembly A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a death domain (DD) interaction, as part of the extrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl death domain-mediated complex assembly involved in extrinsic apoptotic pathway|DD-mediated complex assembly|DISC formation|death domain-mediated complex assembly|death-inducing signalling complex assembly|DISC assembly|death-inducing signaling complex formation mah 2010-01-13T02:48:38Z biological_process owl:Class GO:0065003 biolink:NamedThing protein-containing complex assembly The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex. tmpzr1t_l9r_go_relaxed.owl chaperone activity|protein complex assembly|macromolecular complex assembly|macromolecule complex assembly|protein complex formation GO:0006461 biological_process owl:Class GO:0047109 biolink:NamedThing (S)-3-hydroxyacid-ester dehydrogenase activity Catalysis of the reaction: ethyl (S)-3-hydroxyhexanoate + NADP(+) = ethyl 3-oxohexanoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (S)-3-hydroxyacid ester dehydrogenase activity|3-oxo ester (S)-reductase activity|ethyl-(S)-3-hydroxyhexanoate:NADP+ 3-oxidoreductase activity KEGG_REACTION:R04106|MetaCyc:1.2.1.56-RXN|EC:1.1.1.280|RHEA:18269 Note that this term was EC:1.2.1.56. molecular_function owl:Class GO:1901522 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus Any positive regulation of transcription from RNA polymerase II promoter that is involved in cellular response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl activation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|up-regulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|activation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|up regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|positive regulation of transcription from Pol II promoter involved in cellular response to chemical stimulus|stimulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|stimulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|upregulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|up-regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|upregulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|up regulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus|positive regulation of global transcription from Pol II promoter involved in cellular response to chemical stimulus al 2012-10-19T08:25:05Z biological_process owl:Class GO:0009062 biolink:NamedThing fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. tmpzr1t_l9r_go_relaxed.owl fatty acid catabolism|fatty acid breakdown|fatty acid degradation Wikipedia:Fatty_acid_degradation biological_process owl:Class GO:0006631 biolink:NamedThing fatty acid metabolic process The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. tmpzr1t_l9r_go_relaxed.owl fatty acid metabolism Wikipedia:Fatty_acid_metabolism biological_process owl:Class GO:1901179 biolink:NamedThing spheroidene catabolic process The chemical reactions and pathways resulting in the breakdown of spheroidene. tmpzr1t_l9r_go_relaxed.owl spheroidene breakdown|spheroidene degradation|spheroidene catabolism yaf 2012-07-19T09:49:14Z biological_process owl:Class GO:1901178 biolink:NamedThing spheroidene metabolic process The chemical reactions and pathways involving spheroidene. tmpzr1t_l9r_go_relaxed.owl spheroidene metabolism yaf 2012-07-19T09:48:54Z biological_process owl:Class GO:0034235 biolink:NamedThing GPI anchor binding Binding to a glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes. tmpzr1t_l9r_go_relaxed.owl glycosylphosphatidylinositol binding Note that this term should be used to annotate gene products that interact non-covalently with GPI anchors, and not proteins that have GPI anchors covalently attached. molecular_function owl:Class GO:0051861 biolink:NamedThing glycolipid binding Binding to a glycolipid, any compound containing one or more monosaccharide residues bound by a glycosidic linkage to a hydrophobic group such as an acylglycerol, a sphingoid, a ceramide (N-acylsphingoid) or a prenyl phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010419 biolink:NamedThing rhamnogalacturonan II side chain metabolic process The chemical reactions and pathways involving the side chains of pectic rhamnogalacturonan II. A number of structurally distinct di- and oligosaccharides can be attached to the C-3 and C-2 of the backbone, respectively. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan II side chain metabolism biological_process owl:Class GO:0019177 biolink:NamedThing dihydroneopterin triphosphate pyrophosphohydrolase activity Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:25302|MetaCyc:H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN molecular_function owl:Class GO:2000761 biolink:NamedThing positive regulation of N-terminal peptidyl-lysine acetylation Any process that activates or increases the frequency, rate or extent of N-terminal peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-17T12:58:24Z biological_process owl:Class GO:2000759 biolink:NamedThing regulation of N-terminal peptidyl-lysine acetylation Any process that modulates the frequency, rate or extent of N-terminal peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-17T12:58:16Z biological_process owl:Class GO:0046479 biolink:NamedThing glycosphingolipid catabolic process The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycosphingolipid catabolism|glycosphingolipid breakdown|glycosphingolipid degradation biological_process owl:Class GO:0019377 biolink:NamedThing glycolipid catabolic process The chemical reactions and pathways resulting in the breakdown of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). tmpzr1t_l9r_go_relaxed.owl glycolipid breakdown|glycolipid degradation|glycolipid catabolism biological_process owl:Class GO:0010595 biolink:NamedThing positive regulation of endothelial cell migration Any process that increases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010634 biolink:NamedThing positive regulation of epithelial cell migration Any process that activates or increases the frequency, rate or extent of epithelial cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106062 biolink:NamedThing positive regulation of exit from meiosis Any process that activates or increases the frequency, rate or extent of exit from meiosis. tmpzr1t_l9r_go_relaxed.owl hjd 2017-10-18T16:57:01Z biological_process owl:Class GO:1900486 biolink:NamedThing positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway Any process that activates or increases the frequency, rate or extent of isopentenyl diphosphate biosynthetic process, mevalonate pathway. tmpzr1t_l9r_go_relaxed.owl activation of Ac-MVA pathway|up regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway|positive regulation of isopentenyl diphosphate anabolism, mevalonate pathway|activation of isopentenyl diphosphate synthesis, mevalonate pathway|positive regulation of acetate-mevalonate pathway|activation of isopentenyl diphosphate biosynthetic process, mevalonate pathway|upregulation of isopentenyl diphosphate anabolism, mevalonate pathway|positive regulation of Ac-MVA pathway|upregulation of acetate-mevalonate pathway|upregulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway|up-regulation of acetate-mevalonate pathway|upregulation of isopentenyl diphosphate synthesis, mevalonate pathway|up regulation of isopentenyl diphosphate formation, mevalonate pathway|activation of isopentenyl diphosphate anabolism, mevalonate pathway|positive regulation of isopentenyl diphosphate formation, mevalonate pathway|up-regulation of isopentenyl diphosphate formation, mevalonate pathway|up-regulation of Ac-MVA pathway|upregulation of Ac-MVA pathway|up-regulation of isopentenyl diphosphate anabolism, mevalonate pathway|positive regulation of isopentenyl diphosphate synthesis, mevalonate pathway|up regulation of isopentenyl diphosphate anabolism, mevalonate pathway|activation of acetate-mevalonate pathway|upregulation of isopentenyl diphosphate formation, mevalonate pathway|up-regulation of isopentenyl diphosphate synthesis, mevalonate pathway|up-regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway|up regulation of acetate-mevalonate pathway|up regulation of isopentenyl diphosphate synthesis, mevalonate pathway|activation of isopentenyl diphosphate formation, mevalonate pathway|up regulation of Ac-MVA pathway al 2012-05-02T10:46:46Z biological_process owl:Class GO:2001210 biolink:NamedThing regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway Any process that modulates the frequency, rate or extent of isopentenyl diphosphate biosynthetic process, mevalonate pathway. tmpzr1t_l9r_go_relaxed.owl regulation of isopentenyl diphosphate formation, mevalonate pathway|regulation of isopentenyl diphosphate synthesis, mevalonate pathway|regulation of acetate-mevalonate pathway|regulation of Ac-MVA pathway|regulation of isopentenyl diphosphate anabolism, mevalonate pathway bf 2011-11-15T10:53:42Z biological_process owl:Class GO:1901304 biolink:NamedThing regulation of spermidine biosynthetic process Any process that modulates the frequency, rate or extent of spermidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of spermidine biosynthesis|regulation of spermidine anabolism|regulation of spermidine formation|regulation of spermidine synthesis pm 2012-08-21T13:58:23Z biological_process owl:Class GO:0031976 biolink:NamedThing plastid thylakoid Any thylakoid within a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009579 biolink:NamedThing thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. tmpzr1t_l9r_go_relaxed.owl photosynthetic membrane Wikipedia:Thylakoid A thylakoid is not considered an organelle, but some thylakoids are part of organelles. cellular_component owl:Class GO:1903479 biolink:NamedThing mitotic actomyosin contractile ring assembly actin filament organization Any actin filament organization that is involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|actin filament organisation involved in mitotic actomyosin contractile ring assembly|actin filament organization involved in mitotic actomyosin contractile ring assembly vw 2014-09-23T15:03:19Z biological_process owl:Class GO:0018934 biolink:NamedThing nitrilotriacetate metabolic process The chemical reactions and pathways involving nitrilotriacetate, an aminotricarboxylic acid that binds bivalent metal ions in a ratio of 1:1. As an important industrial chelating agent, NTA has been widely used for various radionuclide processing and decontamination procedures, such as textile, paper and pulp processing and water treatment. tmpzr1t_l9r_go_relaxed.owl nitrilotriacetate metabolism UM-BBD_pathwayID:nta biological_process owl:Class GO:0009616 biolink:NamedThing RNAi-mediated antiviral immune response RNA-mediated post-transcriptional gene silencing mechanism that protects against foreign organism invasion by restricting viral replication and dissemination. tmpzr1t_l9r_go_relaxed.owl virus induced gene silencing|VIGS|viral triggering of virus induced gene silencing|virus-induced gene silencing|viral gene silencing in virus induced gene silencing|RNAi-mediated antiviral immunity https://github.com/geneontology/go-ontology/issues/19958 Virus induced gene silencing (VIGS) is used as a technique to control plant gene expression; when used in that context, this does not represent a normal biological process and is outside the scope of GO. GO:0060145|GO:0060150 biological_process owl:Class GO:0045087 biolink:NamedThing innate immune response Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl innate immunity|nonspecific immune response Wikipedia:Innate_immune_system GO:0002226 biological_process owl:Class GO:1905083 biolink:NamedThing negative regulation of mitochondrial translational elongation Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial translational elongation. tmpzr1t_l9r_go_relaxed.owl inhibition of mitochondrial translational elongation|downregulation of mitochondrial translation elongation|downregulation of mitochondrial translational elongation|down regulation of mitochondrial translation elongation|negative regulation of mitochondrial translation elongation|down-regulation of mitochondrial translation elongation|down regulation of mitochondrial translational elongation|down-regulation of mitochondrial translational elongation|inhibition of mitochondrial translation elongation hjd 2016-03-25T17:37:13Z biological_process owl:Class GO:0032594 biolink:NamedThing protein transport within lipid bilayer The directed movement of a protein from one location to another within a lipid bilayer. tmpzr1t_l9r_go_relaxed.owl receptor transport within lipid bilayer|receptor translocation within membrane|protein translocation within membrane biological_process owl:Class GO:0006886 biolink:NamedThing intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. tmpzr1t_l9r_go_relaxed.owl copper-induced intracellular protein transport GO:0032779 biological_process owl:Class GO:0097068 biolink:NamedThing response to thyroxine A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroxine stimulus. tmpzr1t_l9r_go_relaxed.owl response to thyroxine stimulus|response to T4 stimulus|response to T4 pr 2011-06-14T05:05:07Z biological_process owl:Class GO:0097066 biolink:NamedThing response to thyroid hormone A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to thyroid hormone stimulus pr 2011-06-14T05:01:18Z biological_process owl:Class GO:1990601 biolink:NamedThing 5' overhang single-stranded DNA endodeoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within 5' overhang single-stranded deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl al 2015-01-06T16:24:39Z molecular_function owl:Class GO:0000014 biolink:NamedThing single-stranded DNA endodeoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within a single-stranded deoxyribonucleic acid molecule by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl single-stranded DNA specific endodeoxyribonuclease activity|ssDNA-specific endodeoxyribonuclease activity molecular_function owl:Class GO:1902444 biolink:NamedThing riboflavin binding Binding to riboflavin. tmpzr1t_l9r_go_relaxed.owl al 2013-10-11T08:44:52Z molecular_function owl:Class GO:1904317 biolink:NamedThing cellular response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to platelet-activating factor|cellular response to PAF sl 2015-06-10T18:10:23Z biological_process owl:Class GO:1904316 biolink:NamedThing response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine stimulus. tmpzr1t_l9r_go_relaxed.owl response to PAF|response to platelet-activating factor sl 2015-06-10T18:10:17Z biological_process owl:Class GO:0018304 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulphide RESID:AA0286 biological_process owl:Class GO:1905668 biolink:NamedThing positive regulation of protein localization to endosome Any process that activates or increases the frequency, rate or extent of protein localization to endosome. tmpzr1t_l9r_go_relaxed.owl up regulation of protein localization in endosome|positive regulation of protein localisation in endosome|upregulation of protein localisation in endosome|activation of protein localization to endosome|upregulation of protein localization to endosome|up regulation of protein localization to endosome|up regulation of protein localisation in endosome|activation of protein localisation in endosome|activation of protein localization in endosome|up-regulation of protein localisation in endosome|up-regulation of protein localization to endosome|up-regulation of protein localization in endosome|upregulation of protein localization in endosome|positive regulation of protein localization in endosome bc 2016-11-11T11:19:17Z biological_process owl:Class GO:1905666 biolink:NamedThing regulation of protein localization to endosome Any process that modulates the frequency, rate or extent of protein localization to endosome. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in endosome|regulation of protein localisation in endosome bc 2016-11-11T11:19:01Z biological_process owl:Class GO:1901404 biolink:NamedThing regulation of tetrapyrrole catabolic process Any process that modulates the frequency, rate or extent of tetrapyrrole catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tetrapyrrole catabolism|regulation of tetrapyrrole degradation|regulation of tetrapyrrole breakdown tt 2012-10-01T14:38:12Z biological_process owl:Class GO:0039604 biolink:NamedThing suppression by virus of host translation Any process in which a virus prevents or reduces the frequency, rate or extent of translation of host mRNA. tmpzr1t_l9r_go_relaxed.owl viral inhibition of cellular protein synthesis|viral shutoff of host protein synthesis|host translation shutoff by virus VZ:1579 bf 2012-07-05T04:25:22Z biological_process owl:Class GO:0019057 biolink:NamedThing modulation by virus of host translation Any process in which a virus modulates the frequency, rate or extent of translation of host mRNA. tmpzr1t_l9r_go_relaxed.owl host cell protein synthesis shutoff|regulation of translation in host by virus|regulation of host translation by virus|modification by virus of host cell mRNA translation|modulation of host translation by virus|viral host shutoff protein|viral perturbation of host cell mRNA translation|regulation of host mRNA translation by virus|host cell shutoff biological_process owl:Class GO:0010604 biolink:NamedThing positive regulation of macromolecule metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000702 biolink:NamedThing oxidized base lesion DNA N-glycosylase activity Catalysis of the removal of oxidized bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019104 biolink:NamedThing DNA N-glycosylase activity Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl DNA glycosylase activity|endonuclease VIII activity Reactome:R-HSA-5649673|Reactome:R-HSA-110251|Reactome:R-HSA-5649658|Reactome:R-HSA-9629216|Reactome:R-HSA-9635996|Reactome:R-HSA-110234|Reactome:R-HSA-5220959|Reactome:R-HSA-110246|Reactome:R-HSA-110250|Reactome:R-HSA-9629149|Reactome:R-HSA-9629499|Reactome:R-HSA-110231|Reactome:R-HSA-5221061|Reactome:R-HSA-9629483|Reactome:R-HSA-110218|Reactome:R-HSA-5649681|Reactome:R-HSA-9629470|Reactome:R-HSA-9636008|Reactome:R-HSA-110232|Reactome:R-HSA-5649664|Reactome:R-HSA-110219|Reactome:R-HSA-9629497|Reactome:R-HSA-110248|Reactome:R-HSA-9629492 GO:0008578 molecular_function owl:Class GO:0007444 biolink:NamedThing imaginal disc development The process whose specific outcome is the progression of the imaginal disc over time, from its formation to the metamorphosis to form adult structures. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904138 biolink:NamedThing positive regulation of convergent extension involved in notochord morphogenesis Any process that activates or increases the frequency, rate or extent of convergent extension involved in notochord morphogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of convergent extension involved in notochord morphogenesis|upregulation of convergent extension involved in notochord morphogenesis|up-regulation of convergent extension involved in notochord morphogenesis|activation of convergent extension involved in notochord morphogenesis dph 2015-04-10T21:21:41Z biological_process owl:Class GO:1904105 biolink:NamedThing positive regulation of convergent extension involved in gastrulation Any process that activates or increases the frequency, rate or extent of convergent extension involved in gastrulation. tmpzr1t_l9r_go_relaxed.owl up-regulation of convergent extension involved in gastrulation|upregulation of convergent extension involved in gastrulation|up regulation of convergent extension involved in gastrulation|activation of convergent extension involved in gastrulation dph 2015-04-01T11:17:18Z biological_process owl:Class GO:0051302 biolink:NamedThing regulation of cell division Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990550 biolink:NamedThing mitochondrial alpha-ketoglutarate transmembrane transport The process in which alpha-ketoglutarate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial 2-oxoglutarate transmembrane transport vw 2014-11-19T12:11:59Z GO:1990552 biological_process owl:Class GO:1901648 biolink:NamedThing regulation of actomyosin contractile ring localization Any process that modulates the frequency, rate or extent of actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl regulation of contractile ring localization involved in cell cycle cytokinesis|regulation of contractile ring localisation involved in cell cycle cytokinesis vw 2012-11-19T13:42:45Z biological_process owl:Class GO:0015881 biolink:NamedThing creatine transmembrane transport The directed movement of creatine across a membrane. tmpzr1t_l9r_go_relaxed.owl creatine transport pr 2013-12-20T11:01:18Z GO:1902598 biological_process owl:Class GO:0060921 biolink:NamedThing sinoatrial node cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sinoatrial (SA) node cell. SA node cells are pacemaker cells that are found in the sinoatrial node. tmpzr1t_l9r_go_relaxed.owl SA node cell differentiation|sinus node cell differentiation|SAN cell differentiation dph 2009-09-29T11:03:30Z biological_process owl:Class GO:0060920 biolink:NamedThing cardiac pacemaker cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a pacemaker cell. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions. tmpzr1t_l9r_go_relaxed.owl pacemaker cell differentiation dph 2009-09-29T11:01:31Z biological_process owl:Class GO:0030808 biolink:NamedThing regulation of nucleotide biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of nucleotide formation|regulation of nucleotide anabolism|regulation of nucleotide biosynthesis|regulation of nucleotide synthesis biological_process owl:Class GO:0015797 biolink:NamedThing mannitol transport The directed movement of mannitol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Mannitol is the alditol derived from D-mannose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015791 biolink:NamedThing polyol transport The directed movement of polyols, any polyhydric alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060219 biolink:NamedThing camera-type eye photoreceptor cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001754 biolink:NamedThing eye photoreceptor cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002888 biolink:NamedThing positive regulation of myeloid leukocyte mediated immunity Any process that activates or increases the frequency, rate, or extent of myeloid leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl up regulation of myeloid leukocyte mediated immunity|up-regulation of myeloid leukocyte mediated immunity|upregulation of myeloid leukocyte mediated immunity|activation of myeloid leukocyte mediated immunity|stimulation of myeloid leukocyte mediated immunity biological_process owl:Class GO:2000706 biolink:NamedThing negative regulation of dense core granule biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of dense core granule biogenesis. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-26T10:29:27Z biological_process owl:Class GO:0042854 biolink:NamedThing eugenol metabolic process The chemical reactions and pathways involving eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil. tmpzr1t_l9r_go_relaxed.owl eugenol metabolism|4-allyl-2-methoxyphenol metabolism|eugenic acid metabolic process|eugenic acid metabolism|4-allyl-2-methoxyphenol metabolic process biological_process owl:Class GO:1900735 biolink:NamedThing positive regulation of flocculation Any process that activates or increases the frequency, rate or extent of flocculation. tmpzr1t_l9r_go_relaxed.owl activation of flocculation via cell wall protein-carbohydrate interaction|upregulation of flocculation|up regulation of flocculation via cell wall protein-carbohydrate interaction|up-regulation of flocculation|upregulation of flocculation via cell wall protein-carbohydrate interaction|up-regulation of flocculation via cell wall protein-carbohydrate interaction|up regulation of flocculation|positive regulation of flocculation via cell wall protein-carbohydrate interaction|activation of flocculation dgf 2012-05-27T08:27:38Z GO:1900479 biological_process owl:Class GO:0060256 biolink:NamedThing regulation of flocculation Any process that modulates the rate, frequency or extent of the non-sexual aggregation of single-celled organisms. tmpzr1t_l9r_go_relaxed.owl regulation of flocculation via cell wall protein-carbohydrate interaction dgf 2012-05-01T05:03:32Z GO:1900455 biological_process owl:Class GO:0015119 biolink:NamedThing hexose phosphate transmembrane transporter activity Enables the transfer of hexose phosphate from one side of a membrane to the other. Hexose phosphates is any of a group of monophosphorylated aldoses with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001181 biolink:NamedThing RNA polymerase I general transcription initiation factor activity A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase I. Factors required for RNA polymerase I transcription initiation include upstream activation factor (UAF), core factor (CF), TATA binding protein (TBP) and RRN3. In all species characterized, RNA polymerase I transcribes a large polycistronic transcript that is processed into several mature rRNAs (3 or 4 depending on the species), including the large subunit rRNA (28S in humans), the small subunit rRNA (18S in humans), as well as one or two additional smaller rRNAs (the 5.8S rRNA in humans). In most species, this large rRNA transcript is the sole product of RNA polymerase I. However there are rare exceptions, such as Trypanosoma brucei, where RNA polymerase I also transcribes certain mRNAs. tmpzr1t_l9r_go_relaxed.owl general RNA polymerase I transcription factor activity|RNA polymerase I transcription general initiation factor activity|transcription factor activity, core RNA polymerase I binding|core RNA polymerase I binding transcription factor activity https://github.com/geneontology/go-ontology/issues/14736|https://github.com/geneontology/go-ontology/issues/20253 krc 2011-08-12T04:13:30Z molecular_function owl:Class GO:0140223 biolink:NamedThing general transcription initiation factor activity A molecular function required for core promoter activity that mediates the assembly of the RNA polymerase holoenzyme at promoter DNA to form the pre-initiation complex (PIC). General transcription factors (GTFs) bind to and open promoter DNA, initiate RNA synthesis and stimulate the escape of the polymerase from the promoter. Not all subunits of the general transcription factor are necessarily present at all promoters to initiate transcription. GTFs act at each promoter, although the exact subunit composition at individual promoters may vary. tmpzr1t_l9r_go_relaxed.owl general transcription factor activity|GTF activity|basal transcription factor activity https://github.com/geneontology/go-ontology/issues/20253 Usage guidance: The distinction between general transcription factors and DNA-binding transcription factors is that the latter modulate the selection of which genes are expressed under specific conditions, while general transcription factors are the constitutive machinery required for transcription initiation. pg 2018-05-24T07:51:23Z molecular_function owl:Class GO:0035029 biolink:NamedThing dorsal closure, leading edge cell fate commitment The commitment of cells to leading edge cell fate during dorsal closure. Leading edge cells are the dorsal-most cells of the migrating epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035027 biolink:NamedThing leading edge cell fate commitment The commitment of cells to leading edge cell fate and their capacity to differentiate into leading edge cells. Leading edge cells are found at the front of a migrating epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990264 biolink:NamedThing peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity Any peptidyl-tyrosine dephosphorylation that is involved in inactivation of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl al 2014-01-09T14:28:41Z biological_process owl:Class GO:0035335 biolink:NamedThing peptidyl-tyrosine dephosphorylation The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-01T01:09:14Z biological_process owl:Class GO:2000344 biolink:NamedThing positive regulation of acrosome reaction Any process that activates or increases the frequency, rate or extent of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-01T12:02:18Z biological_process owl:Class GO:0016613 biolink:NamedThing vanadium-iron nitrogenase complex An enzyme complex containing a vanadium-iron cluster found in some species, such as Azotobacter vinelandii. It is composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase, the vanadium-iron protein, is tetrameric with an alpha2-beta2 structure, and nitrogenase reductase is a homodimer. tmpzr1t_l9r_go_relaxed.owl vanadium-iron nitrogenase activity cellular_component owl:Class GO:0016610 biolink:NamedThing nitrogenase complex An enzyme complex composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase is tetrameric with an alpha2-beta2 structure and nitrogenase reductase is a homodimer, and both are associated with metal ions, which differ between species. Both proteins are required for the enzyme activity of the complex, the formation of oxidized ferredoxin and ammonia from reduced ferredoxin and nitrogen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015432 biolink:NamedThing ABC-type bile acid transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(in) + ATP + H2O -> bile acid(out) + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl ATP-dependent bile acid transmembrane transporter activity|bile acid-exporting ATPase activity|ATPase-coupled bile acid transmembrane transporter activity|bile acid porter activity Reactome:R-HSA-193362|TC:3.A.1.207.2|RHEA:50048|Reactome:R-HSA-194153|Reactome:R-HSA-5678517 molecular_function owl:Class GO:0015125 biolink:NamedThing bile acid transmembrane transporter activity Enables the transfer of bile acid from one side of a membrane to the other. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-194130|Reactome:R-HSA-5661184|Reactome:R-HSA-194083|Reactome:R-HSA-194079|Reactome:R-HSA-5661198 molecular_function owl:Class GO:0018594 biolink:NamedThing tert-butanol 2-monooxygenase activity Catalysis of the reaction: tert-butanol + 1/2 O2 = 2-methyl-2-hydroxy-1-propanol. tmpzr1t_l9r_go_relaxed.owl tert-butyl alcohol 2-monooxygenase activity molecular_function owl:Class GO:0047628 biolink:NamedThing ADP-thymidine kinase activity Catalysis of the reaction: ADP + thymidine = AMP + thymidine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl ADP:thymidine 5'-phosphotransferase activity|ADP:dThd phosphotransferase activity|adenosine diphosphate-thymidine phosphotransferase activity EC:2.7.1.118|RHEA:13413|MetaCyc:ADP--THYMIDINE-KINASE-RXN molecular_function owl:Class GO:0052072 biolink:NamedThing induction by symbiont of defense-related host salicylic acid-mediated signal transduction pathway Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of host salicylic acid-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of defense-related host salicylic acid-mediated signal transduction pathway|activation by organism of defense-related host SA-mediated signal transduction pathway|upregulation by organism of defense-related host SA-mediated signal transduction pathway|upregulation by organism of defense-related host salicylic acid-mediated signal transduction pathway|induction by organism of defense-related host SA-mediated signal transduction pathway|positive regulation by organism of defense-related host SA-mediated signal transduction pathway|up regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|positive regulation by organism of defense-related salicylic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction|upregulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|positive regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|induction by organism of defense-related host salicylic acid-mediated signal transduction pathway|up-regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|activation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|stimulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway GO:0052270 biological_process owl:Class GO:0052081 biolink:NamedThing modulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway Any process in which an organism modulates the frequency, rate or extent of host salicylic acid-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related salicylic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction|modulation of defense-related host SA-mediated signal transduction pathway by organism GO:0052445 biological_process owl:Class GO:0014747 biolink:NamedThing positive regulation of tonic skeletal muscle contraction Any process that activates or increases the frequency, rate or extent of tonic skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031475 biolink:NamedThing myosin V complex A myosin complex containing a dimer of class V myosin heavy chains and associated light chains; involved in intracellular transport. Myosin V is a dimeric molecule consisting of conserved motor domains followed by 6 IQ motifs which bind specific light chains and calmodulin. The tail domain is important for cellular localization and cargo binding and can be divided into an alpha-helical coiled coil region and a C-terminal globular region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016461 biolink:NamedThing unconventional myosin complex A portmanteau term for myosins other than myosin II. tmpzr1t_l9r_go_relaxed.owl non-muscle myosin Note that this term is retained because it is widely used by biologists. GO:0005860 cellular_component owl:Class GO:0031925 biolink:NamedThing pyridoxal transmembrane transporter activity Enables the transfer of pyridoxal from one side of a membrane to the other. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxal transporter activity molecular_function owl:Class GO:0014043 biolink:NamedThing negative regulation of neuron maturation Any process that stops, prevents, or reduces the frequency, rate or extent of neuron maturation. tmpzr1t_l9r_go_relaxed.owl inhibition of neuron maturation|downregulation of neuron maturation|down-regulation of neuron maturation|down regulation of neuron maturation biological_process owl:Class GO:1903430 biolink:NamedThing negative regulation of cell maturation Any process that stops, prevents or reduces the frequency, rate or extent of cell maturation. tmpzr1t_l9r_go_relaxed.owl negative regulation of functional differentiation|down-regulation of functional differentiation|downregulation of cell maturation|inhibition of functional differentiation|inhibition of cell maturation|down regulation of cell maturation|down regulation of functional differentiation|down-regulation of cell maturation|downregulation of functional differentiation jl 2014-09-15T13:31:32Z biological_process owl:Class GO:0099630 biolink:NamedThing postsynaptic neurotransmitter receptor cycle The process during which neurotransmitter receptors in the postsynaptic specialization membrane are recycled via the endosome. This cycle includes release from anchoring (trapping), diffusion in the synaptic membrane to the postsynaptic endocytic region, endocytosis, transport to the endosome, recycling in the endosome, transport back the synaptic membrane and subsequent trapping in the postsynaptic specialization membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099627 biolink:NamedThing neurotransmitter receptor cycle The process during which neurotransmitter receptors, anchored in some region of the synaptic membrane, are recycled via the endosome. This cycle includes release from anchoring, diffusion in the synaptic membrane to an endocytic region, endocytosis, transport to the endosome, recycling in the endosome, transport back the synaptic membrane and subsequent anchoring (trapping). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047255 biolink:NamedThing galactogen 6-beta-galactosyltransferase activity Catalysis of the reaction: galactogen + UDP-galactose = 1,6-beta-D-galctosylgalactogen + UDP. tmpzr1t_l9r_go_relaxed.owl 1,6-D-galactosyltransferase activity|uridine diphosphogalactose-galactogen galactosyltransferase activity|UDPgalactose:galactogen beta-1,6-D-galactosyltransferase activity|UDP-galactose:galactogen beta-1,6-D-galactosyltransferase activity|galactogen 6beta-galactosyltransferase activity|beta-(1,6)-D-galactosyltransferase activity MetaCyc:2.4.1.205-RXN|EC:2.4.1.205 molecular_function owl:Class GO:0035250 biolink:NamedThing UDP-galactosyltransferase activity Catalysis of the transfer of a galactose group from UDP-galactose to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042326 biolink:NamedThing negative regulation of phosphorylation Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. tmpzr1t_l9r_go_relaxed.owl down regulation of phosphorylation|down-regulation of phosphorylation|inhibition of phosphorylation|downregulation of phosphorylation biological_process owl:Class GO:1903335 biolink:NamedThing regulation of vacuolar transport Any process that modulates the frequency, rate or extent of vacuolar transport. tmpzr1t_l9r_go_relaxed.owl vw 2014-08-18T13:16:04Z biological_process owl:Class GO:0035115 biolink:NamedThing embryonic forelimb morphogenesis The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. The forelimbs are the front limbs of an animal, e.g. the arms of a human. tmpzr1t_l9r_go_relaxed.owl embryonic arm morphogenesis GO:0035117 biological_process owl:Class GO:0030326 biolink:NamedThing embryonic limb morphogenesis The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. A limb is an appendage of an animal used for locomotion or grasping. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048329 biolink:NamedThing negative regulation of axial mesodermal cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of axial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl down-regulation of axial mesodermal cell fate specification|downregulation of axial mesodermal cell fate specification|down regulation of axial mesodermal cell fate specification|inhibition of axial mesodermal cell fate specification biological_process owl:Class GO:0048328 biolink:NamedThing regulation of axial mesodermal cell fate specification Any process that modulates the frequency, rate or extent of axial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090096 biolink:NamedThing positive regulation of metanephric cap mesenchymal cell proliferation Any process that increases the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-13T10:40:32Z biological_process owl:Class GO:0002053 biolink:NamedThing positive regulation of mesenchymal cell proliferation The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells. tmpzr1t_l9r_go_relaxed.owl up-regulation of mesenchymal cell proliferation|activation of mesenchymal cell proliferation|up regulation of mesenchymal cell proliferation|upregulation of mesenchymal cell proliferation|stimulation of mesenchymal cell proliferation biological_process owl:Class GO:0080178 biolink:NamedThing 5-carbamoylmethyl uridine residue modification The chemical reactions and pathways involving the addition of a 5-carbamoylmethyl group to a uridine residue in RNA. tmpzr1t_l9r_go_relaxed.owl 5-carbamoylmethyluridine metabolic process dhl 2011-04-28T04:36:23Z biological_process owl:Class GO:0030488 biolink:NamedThing tRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048794 biolink:NamedThing swim bladder development The process whose specific outcome is the progression of the swim bladder over time, from its formation to the mature structure. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ. tmpzr1t_l9r_go_relaxed.owl gas bladder development biological_process owl:Class GO:1905201 biolink:NamedThing gibberellin transmembrane transporter activity Enables the transfer of gibberellin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl lr 2016-05-12T18:20:13Z molecular_function owl:Class GO:0051085 biolink:NamedThing chaperone cofactor-dependent protein refolding The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release. tmpzr1t_l9r_go_relaxed.owl chaperone cofactor-dependent 'de novo' protein folding|chaperone mediated protein folding requiring cofactor|chaperone cofactor-dependent protein folding|chaperone co-factor-dependent protein folding|chaperone co-factor-dependent protein refolding https://github.com/geneontology/go-ontology/issues/10726 GO:0070389 biological_process owl:Class GO:1905236 biolink:NamedThing cellular response to quercetin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a quercetin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T21:29:48Z biological_process owl:Class GO:1905235 biolink:NamedThing response to quercetin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a quercetin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T21:29:40Z biological_process owl:Class GO:0018253 biolink:NamedThing peptide cross-linking via 5-imidazolinone glycine The formation of a protein active site cross-link from the alpha-carboxyl carbon of residue n, an alanine, serine or cysteine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with an oxidation of residue n+1 to form an active aldehyde. tmpzr1t_l9r_go_relaxed.owl biosynthesis of protein-protein cross-link via 5-imidazolinone glycine|biosynthetic process of protein-protein cross-link via 5-imidazolinone glycine RESID:AA0184|RESID:AA0187|RESID:AA0188 biological_process owl:Class GO:0018149 biolink:NamedThing peptide cross-linking The formation of a covalent cross-link between or within protein chains. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000495 biolink:NamedThing regulation of cell proliferation involved in compound eye morphogenesis Any process that modulates the frequency, rate or extent of cell proliferation involved in compound eye morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-18T02:18:34Z biological_process owl:Class GO:1903058 biolink:NamedThing positive regulation of melanosome organization Any process that activates or increases the frequency, rate or extent of melanosome organization. tmpzr1t_l9r_go_relaxed.owl up regulation of melanosome organization and biogenesis|activation of melanosome organization and biogenesis|upregulation of melanosome organization|positive regulation of melanosome organization and biogenesis|up regulation of melanosome organization|positive regulation of melanosome organisation|up-regulation of melanosome organization|up-regulation of melanosome organisation|up regulation of melanosome organisation|upregulation of melanosome organization and biogenesis|activation of melanosome organisation|activation of melanosome organization|up-regulation of melanosome organization and biogenesis|upregulation of melanosome organisation Lack of the transcription factor Zeb2 Q9R0G7 leads to spherical melanosomes with irregular borders, in contrast to the rod-shaped melanosomes of ZEB2MCWT hair follicles. rl 2014-05-27T13:28:01Z biological_process owl:Class GO:0010638 biolink:NamedThing positive regulation of organelle organization Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. tmpzr1t_l9r_go_relaxed.owl positive regulation of organelle organization and biogenesis|positive regulation of organelle organisation biological_process owl:Class GO:1900901 biolink:NamedThing positive regulation of heptadecane metabolic process Any process that activates or increases the frequency, rate or extent of heptadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of heptadecane metabolism|up regulation of heptadecane metabolic process|up-regulation of heptadecane metabolism|upregulation of heptadecane metabolic process|positive regulation of heptadecane metabolism|up-regulation of heptadecane metabolic process|activation of heptadecane metabolism|activation of heptadecane metabolic process|up regulation of heptadecane metabolism tt 2012-06-13T03:30:33Z biological_process owl:Class GO:0150202 biolink:NamedThing negative regulation of transport across blood-brain barrier Any process that stops, prevents or reduces the frequency, rate or extent of transport across blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl bc 2020-03-26T19:28:51Z biological_process owl:Class GO:0052581 biolink:NamedThing (-)-isopiperitenone reductase activity Catalysis of the reaction: (6R)-isoperitenone + H(+) + NADPH = (2R,5R)-isopulegone + NADP(+). tmpzr1t_l9r_go_relaxed.owl (+)-cis-isopulegone:NADP+ oxidoreductase activity MetaCyc:RXN-5161|KEGG_REACTION:R06417|RHEA:25649|EC:1.3.1.82 ai 2010-08-09T04:42:05Z molecular_function owl:Class GO:0035671 biolink:NamedThing enone reductase activity Catalysis of the reaction: an enone + NADPH + H+ = a ketone + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12267 bf 2011-02-04T10:59:15Z molecular_function owl:Class GO:1903322 biolink:NamedThing positive regulation of protein modification by small protein conjugation or removal Any process that activates or increases the frequency, rate or extent of protein modification by small protein conjugation or removal. tmpzr1t_l9r_go_relaxed.owl upregulation of protein modification by small protein conjugation or removal|activation of protein modification by small protein conjugation or removal|up-regulation of protein modification by small protein conjugation or removal|up regulation of protein modification by small protein conjugation or removal vw 2014-08-18T13:01:15Z biological_process owl:Class GO:1903320 biolink:NamedThing regulation of protein modification by small protein conjugation or removal Any process that modulates the frequency, rate or extent of protein modification by small protein conjugation or removal. tmpzr1t_l9r_go_relaxed.owl vw 2014-08-18T13:01:00Z biological_process owl:Class GO:0036487 biolink:NamedThing nitric-oxide synthase inhibitor activity Binds to and stops, prevents or reduces the activity of nitric oxide synthase. tmpzr1t_l9r_go_relaxed.owl nitric oxide synthase inhibitor activity|NOS inhibitor activity bf 2014-09-09T15:07:20Z molecular_function owl:Class GO:0030235 biolink:NamedThing nitric-oxide synthase regulator activity Binds to and modulates the activity of nitric oxide synthase. tmpzr1t_l9r_go_relaxed.owl nitric oxide synthase regulator activity See also 'regulation of nitric-oxide synthase activity ; GO:0050999'. molecular_function owl:Class GO:1905758 biolink:NamedThing positive regulation of primary cell septum biogenesis Any process that activates or increases the frequency, rate or extent of primary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-12T18:10:07Z biological_process owl:Class GO:1905756 biolink:NamedThing regulation of primary cell septum biogenesis Any process that modulates the frequency, rate or extent of primary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-12T18:09:50Z biological_process owl:Class GO:1904510 biolink:NamedThing positive regulation of protein localization to basolateral plasma membrane Any process that activates or increases the frequency, rate or extent of protein localization to basolateral plasma membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of protein localisation to basolateral plasma membrane|up-regulation of protein localisation in basolateral plasma membrane|up regulation of protein localization in basolateral plasma membrane|up regulation of protein localisation in basolateral plasma membrane|up-regulation of protein localization in basolateral plasma membrane|up-regulation of protein localisation to basolateral plasma membrane|up-regulation of protein localization to basolateral plasma membrane|upregulation of protein localisation in basolateral plasma membrane|positive regulation of protein localization in basolateral plasma membrane|up regulation of protein localization to basolateral plasma membrane|upregulation of protein localization in basolateral plasma membrane|upregulation of protein localization to basolateral plasma membrane|up regulation of protein localisation to basolateral plasma membrane|activation of protein localization to basolateral plasma membrane|positive regulation of protein localisation to basolateral plasma membrane|activation of protein localization in basolateral plasma membrane|positive regulation of protein localisation in basolateral plasma membrane|activation of protein localisation to basolateral plasma membrane|activation of protein localisation in basolateral plasma membrane kmv 2015-07-24T17:56:38Z biological_process owl:Class GO:0043020 biolink:NamedThing NADPH oxidase complex A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2. tmpzr1t_l9r_go_relaxed.owl flavocytochrome b558|respiratory-burst oxidase cellular_component owl:Class GO:0015677 biolink:NamedThing copper ion import The directed movement of copper ions into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl copper ion uptake biological_process owl:Class GO:0006825 biolink:NamedThing copper ion transport The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090293 biolink:NamedThing nitrogen catabolite regulation of transcription A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl regulation of transcription by nitrogen catabolites tb 2010-02-24T02:31:53Z biological_process owl:Class GO:1900236 biolink:NamedThing positive regulation of Kit signaling pathway Any process that activates or increases the frequency, rate or extent of Kit signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of stem cell factor receptor signaling pathway|up regulation of stem cell factor receptor signaling pathway|up-regulation of stem cell factor receptor signaling pathway|upregulation of Kit signaling pathway|upregulation of stem cell factor receptor signaling pathway|positive regulation of stem cell factor receptor signaling pathway|up-regulation of Kit signaling pathway|up regulation of Kit signaling pathway|positive regulation of Kit signalling pathway|upregulation of stem cell factor signaling pathway|up regulation of stem cell factor signaling pathway|activation of stem cell factor signaling pathway|positive regulation of stem cell factor signaling pathway|up-regulation of stem cell factor signaling pathway|activation of Kit signaling pathway bf 2012-03-23T02:54:32Z biological_process owl:Class GO:0031671 biolink:NamedThing primary cell septum biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a primary cell septum following nuclear division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902410 biolink:NamedThing mitotic cytokinetic process Any cytokinetic process that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-12T12:29:36Z biological_process owl:Class GO:0005656 biolink:NamedThing nuclear pre-replicative complex A protein-DNA complex assembled at eukaryotic DNA replication origins during late mitosis and G1, allowing the origin to become competent, or 'licensed', for replication. The complex normally includes the origin recognition complex (ORC), Cdc6, Cdt1 and the MiniChromosome Maintenance (Mcm2-7) proteins. tmpzr1t_l9r_go_relaxed.owl pre-RC|eukaryotic pre-replicative complex|pre-replicative complex cellular_component owl:Class GO:0060898 biolink:NamedThing eye field cell fate commitment involved in camera-type eye formation The commitment of neurectodermal cells to cells of the eye field and their capacity to differentiate into eye field cells. Eye field cells are neurectodermal cells that will form the optic placode. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T02:10:58Z biological_process owl:Class GO:0060581 biolink:NamedThing cell fate commitment involved in pattern specification The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells within a field of cells that will exhibit a certain pattern of differentiation. Positional information is established through protein signals that emanate from a localized source within a developmental field resulting in specification of a cell type. Those signals are then interpreted in a cell-autonomous manner resulting in the determination of the cell type. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-07T12:40:55Z biological_process owl:Class GO:0034952 biolink:NamedThing malonate semialdehyde decarboxylase activity Catalysis of the reaction: malonate semialdehyde + H+ = acetaldehyde + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0266 molecular_function owl:Class GO:0046379 biolink:NamedThing extracellular polysaccharide metabolic process The chemical reactions and pathways involving polysaccharides used in extracellular structures. tmpzr1t_l9r_go_relaxed.owl extracellular polysaccharide metabolism biological_process owl:Class GO:0009971 biolink:NamedThing anastral spindle assembly involved in male meiosis The aggregation, arrangement and bonding together of a set of components to form the anastral spindle in male meiotic cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015379 biolink:NamedThing potassium:chloride symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Cl-(out) = K+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl potassium ion symporter activity Reactome:R-HSA-5623806|Reactome:R-HSA-426155 GO:0022820 molecular_function owl:Class GO:0015377 biolink:NamedThing cation:chloride symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation(out) + Cl-(out) = cation(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl cation:chloride cotransporter activity molecular_function owl:Class GO:0036491 biolink:NamedThing regulation of translation initiation in response to endoplasmic reticulum stress Any process that modulates the frequency, rate or extent of translation initiation, as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl regulation of translation initiation in response to ER stress bf 2015-02-05T09:52:13Z biological_process owl:Class GO:0102533 biolink:NamedThing genkwanin 4'-O-methyltransferase activity Catalysis of the reaction: genkwanin + S-adenosyl-L-methionine <=> H+ + apigenin-7,4'-dimethyl ether + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14750 molecular_function owl:Class GO:0098721 biolink:NamedThing uracil import across plasma membrane The directed movement of uracil from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl uracil import into cell tb 2013-09-27T17:54:23Z GO:1902431 biological_process owl:Class GO:0098657 biolink:NamedThing import into cell The directed movement of some substance from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis. tmpzr1t_l9r_go_relaxed.owl uptake biological_process owl:Class GO:0005092 biolink:NamedThing GDP-dissociation inhibitor activity Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding. tmpzr1t_l9r_go_relaxed.owl GDI molecular_function owl:Class GO:0030695 biolink:NamedThing GTPase regulator activity Binds to and modulates the activity of a GTPase. tmpzr1t_l9r_go_relaxed.owl small GTPase regulatory/interacting protein activity|small GTPase regulator activity GO:0005083 molecular_function owl:Class GO:0098978 biolink:NamedThing glutamatergic synapse A synapse that uses glutamate as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045202 biolink:NamedThing synapse The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl synaptic junction|electrotonic synapse|mixed synapse Wikipedia:Chemical_synapse|NIF_Subcellular:sao914572699 cellular_component owl:Class GO:0086011 biolink:NamedThing membrane repolarization during action potential The process in which ions are transported across a membrane such that the membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:15:05Z biological_process owl:Class GO:1902623 biolink:NamedThing negative regulation of neutrophil migration Any process that stops, prevents or reduces the frequency, rate or extent of neutrophil migration. tmpzr1t_l9r_go_relaxed.owl down-regulation of neutrophil migration|downregulation of neutrophil migration|down regulation of neutrophil migration|inhibition of neutrophil migration sl 2014-01-15T18:58:49Z biological_process owl:Class GO:1900809 biolink:NamedThing fumigaclavine C biosynthetic process The chemical reactions and pathways resulting in the formation of fumigaclavine C. tmpzr1t_l9r_go_relaxed.owl fumigaclavine C biosynthesis|fumigaclavine C formation|fumigaclavine C anabolism|fumigaclavine C synthesis di 2012-06-04T10:00:06Z biological_process owl:Class GO:0035837 biolink:NamedThing ergot alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of an ergot alkaloid. tmpzr1t_l9r_go_relaxed.owl ergot alkaloid formation|ergot alkaloid biosynthesis|ergot alkaloid anabolism|ergot alkaloid synthesis bf 2011-05-04T03:23:57Z biological_process owl:Class GO:2000804 biolink:NamedThing regulation of termination of RNA polymerase II transcription, poly(A)-coupled Any process that modulates the frequency, rate or extent of termination of RNA polymerase II transcription, poly(A)-coupled. tmpzr1t_l9r_go_relaxed.owl regulation of transcription termination from Pol II promoter, RNA polymerase(A) coupled|regulation of transcription termination from Pol II promoter, poly(A) coupled|regulation of termination of RNA polymerase II transcription, polyadenylation-coupled pr 2011-07-04T08:41:27Z biological_process owl:Class GO:1903202 biolink:NamedThing negative regulation of oxidative stress-induced cell death Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced cell death. tmpzr1t_l9r_go_relaxed.owl inhibition of cell death in response to oxidative stress|down regulation of cell death in response to oxidative stress|protection against oxidative stress-induced cell death|downregulation of cell death in response to oxidative stress|negative regulation of cell death in response to oxidative stress|down-regulation of cell death in response to oxidative stress bf 2014-07-21T16:10:36Z biological_process owl:Class GO:0032662 biolink:NamedThing regulation of interleukin-19 production Any process that modulates the frequency, rate, or extent of interleukin-19 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-19 biosynthetic process|regulation of IL-19 production GO:0045384 biological_process owl:Class GO:0008527 biolink:NamedThing taste receptor activity Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste. tmpzr1t_l9r_go_relaxed.owl gustatory receptor molecular_function owl:Class GO:0097190 biolink:NamedThing apoptotic signaling pathway A series of molecular signals which triggers the apoptotic death of a cell. The pathway starts with reception of a signal, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl apoptotic signalling pathway|induction of apoptosis by extracellular signals This term can be used to annotate gene products involved in apoptotic events happening downstream of the cross-talk point between the extrinsic and intrinsic apoptotic pathways. The cross-talk starts when caspase-8 cleaves Bid and truncated Bid interacts with mitochondria. From this point on it is not possible to distinguish between extrinsic and intrinsic pathways. pr 2011-11-23T09:30:23Z GO:0008624 biological_process owl:Class GO:0022617 biolink:NamedThing extracellular matrix disassembly A process that results in the breakdown of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022411 biolink:NamedThing cellular component disassembly A cellular process that results in the breakdown of a cellular component. tmpzr1t_l9r_go_relaxed.owl cell structure disassembly|cellular component disassembly at cellular level GO:0071845 biological_process owl:Class GO:0038012 biolink:NamedThing negative regulation of Wnt signaling pathway by Wnt receptor internalization Any process in which internalization of a Wnt receptor stops, prevents, or reduces the frequency, rate or extent of Wnt signal transduction. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signalling pathway by Wnt receptor internalization|negative regulation of Wnt-activated signaling pathway by Wnt receptor internalization|ligand-dependent internalization of Frizzled|negative regulation of Wnt receptor signaling pathway by Wnt receptor internalization|negative regulation of Wnt receptor signaling pathway by Wnt receptor endocytosis bf 2011-06-23T03:57:59Z biological_process owl:Class GO:0038011 biolink:NamedThing negative regulation of signal transduction by receptor internalization Any process in which internalization of a signaling receptor stops, prevents, or reduces the frequency, rate or extent of signal transduction. Receptor internalization can attenuate or reduce the strength of signaling by reducing the concentration of cell surface receptors available to ligands. tmpzr1t_l9r_go_relaxed.owl negative regulation of signaling pathway by receptor endocytosis bf 2011-06-23T03:39:06Z biological_process owl:Class GO:0044522 biolink:NamedThing envenomation resulting in myocyte killing in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, killing heart myocytes and ultimately resulting in muscle damage in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in myocyte killing causing muscle damage in other organism jl 2012-02-27T12:33:57Z biological_process owl:Class GO:0044521 biolink:NamedThing envenomation resulting in muscle damage in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with resultant muscle damage in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-27T12:31:08Z biological_process owl:Class GO:0090316 biolink:NamedThing positive regulation of intracellular protein transport Any process that activates or increases the frequency, rate or extent of the directed movement of proteins within cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-16T03:45:07Z biological_process owl:Class GO:2000707 biolink:NamedThing positive regulation of dense core granule biogenesis Any process that activates or increases the frequency, rate or extent of dense core granule biogenesis. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-26T10:29:30Z biological_process owl:Class GO:2000705 biolink:NamedThing regulation of dense core granule biogenesis Any process that modulates the frequency, rate or extent of dense core granule biogenesis. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-26T10:29:21Z biological_process owl:Class GO:0048763 biolink:NamedThing calcium-induced calcium release activity Enables transmembrane transfer of calcium ions from an intracellular store to the cytosol on induction by increased calcium concentration. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015278 biolink:NamedThing calcium-release channel activity Enables the transmembrane transfer of a calcium ion from intracellular stores by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl intracellular ligand-gated calcium channel activity GO:0005218 molecular_function owl:Class GO:1902180 biolink:NamedThing verruculogen catabolic process The chemical reactions and pathways resulting in the breakdown of verruculogen. tmpzr1t_l9r_go_relaxed.owl verruculogen breakdown|verruculogen degradation|verruculogen catabolism di 2013-05-30T17:44:30Z biological_process owl:Class GO:0030214 biolink:NamedThing hyaluronan catabolic process The chemical reactions and pathways resulting in the breakdown of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl hyaluronan degradation|hyaluronan catabolism|hyaluronan breakdown biological_process owl:Class GO:0006027 biolink:NamedThing glycosaminoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. tmpzr1t_l9r_go_relaxed.owl glycosaminoglycan catabolism|glycosaminoglycan degradation|glycosaminoglycan breakdown biological_process owl:Class GO:0160003 biolink:NamedThing mono-ADP-D-ribose modification-dependent protein binding Binding to a protein upon mono-ADP-ribosylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require a mono-ADP-D-ribose post-translational modification: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of the ADP-D-ribose modification. It may be that the PTM causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term. rl 2021-07-12T23:36:00Z molecular_function owl:Class GO:0160002 biolink:NamedThing ADP-D-ribose modification-dependent protein binding Binding to a protein upon ADP-ribosylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require a ADP-D-ribose post-translational modification: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of the ADP-D-ribose modification. It may be that the PTM causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term. rl 2021-07-12T23:31:53Z molecular_function owl:Class GO:0035163 biolink:NamedThing embryonic hemocyte differentiation The process in which a relatively unspecialized cell derived from the embryonic head mesoderm acquires the specialized features of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. tmpzr1t_l9r_go_relaxed.owl embryonic hemocyte cell differentiation|embryonic arthropod blood cell differentiation biological_process owl:Class GO:0042386 biolink:NamedThing hemocyte differentiation The process in which a relatively unspecialized cell acquires the characteristics of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. tmpzr1t_l9r_go_relaxed.owl arthropod blood cell differentiation biological_process owl:Class GO:0002880 biolink:NamedThing regulation of chronic inflammatory response to non-antigenic stimulus Any process that modulates the frequency, rate, or extent of a chronic inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002676 biolink:NamedThing regulation of chronic inflammatory response Any process that modulates the frequency, rate, or extent of a chronic inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002732 biolink:NamedThing positive regulation of dendritic cell cytokine production Any process that activates or increases the frequency, rate, or extent of dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl activation of dendritic cell cytokine production|upregulation of dendritic cell cytokine production|up-regulation of dendritic cell cytokine production|up regulation of dendritic cell cytokine production|stimulation of dendritic cell cytokine production biological_process owl:Class GO:0002730 biolink:NamedThing regulation of dendritic cell cytokine production Any process that modulates the frequency, rate, or extent of dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090315 biolink:NamedThing negative regulation of protein targeting to membrane Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-16T03:42:22Z biological_process owl:Class GO:0002662 biolink:NamedThing negative regulation of B cell tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl inhibition of B cell tolerance induction|negative regulation of B-lymphocyte tolerance induction|downregulation of B cell tolerance induction|down-regulation of B cell tolerance induction|down regulation of B cell tolerance induction|negative regulation of B lymphocyte tolerance induction|negative regulation of B-cell tolerance induction biological_process owl:Class GO:0002661 biolink:NamedThing regulation of B cell tolerance induction Any process that modulates the frequency, rate, or extent of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte tolerance induction|regulation of B-cell tolerance induction|regulation of B lymphocyte tolerance induction biological_process owl:Class GO:0051799 biolink:NamedThing negative regulation of hair follicle development Any process that stops, prevents, or reduces the frequency, rate or extent of hair follicle development. tmpzr1t_l9r_go_relaxed.owl down-regulation of hair follicle development|inhibition of hair follicle development|downregulation of hair follicle development|down regulation of hair follicle development biological_process owl:Class GO:0110157 biolink:NamedThing reelin complex An extracellular complex that binds lipoprotein receptors VLDLR and APOER2, cadherin-related neuronal receptors (CNRs) or alpha3beta1 integrin and induces various downstream, reelin-dependent, phosphorylation cascades. It ultimately affects polarization, differentiation, neuronal migration and layer formation in the embryonic brain and neuron growth, maturation, and synaptic activity in the postnatal and adult brain. tmpzr1t_l9r_go_relaxed.owl kmv 2019-07-15T15:10:58Z cellular_component owl:Class GO:0036090 biolink:NamedThing cleavage furrow ingression Advancement of the cleavage furrow from the outside of the cell inward towards the center of the cell. The cleavage furrow acts as a 'purse string' which draws tight to separate daughter cells during cytokinesis and partition the cytoplasm between the two daughter cells. The furrow ingresses until a cytoplasmic bridge is formed. tmpzr1t_l9r_go_relaxed.owl cleavage furrow contraction Consider also annotating to 'contractile ring contraction involved in cell cycle cytokinesis ; GO:0000916'. bf 2012-01-10T02:46:05Z biological_process owl:Class GO:0099024 biolink:NamedThing plasma membrane invagination An infolding of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034021 biolink:NamedThing response to silicon dioxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silicon dioxide stimulus. tmpzr1t_l9r_go_relaxed.owl response to silica|response to silox biological_process owl:Class GO:0032412 biolink:NamedThing regulation of ion transmembrane transporter activity Any process that modulates the activity of an ion transporter. tmpzr1t_l9r_go_relaxed.owl regulation of ion transporter activity biological_process owl:Class GO:0022898 biolink:NamedThing regulation of transmembrane transporter activity Any process that modulates the frequency, rate or extent of transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015462 biolink:NamedThing ABC-type protein transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein(out) = ADP + phosphate + protein(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled protein transmembrane transporter activity|protein-transmembrane transporting ATPase activity|protein ABC transporter|protein-transporting ATPase activity|ABC-type protein transmembrane transporter activity|pilin/fimbrilin exporter activity EC:7.4.2.5 Enzymes with this activity include bacterial enzymes dedicated to the secretion of one or several closely related proteins belonging to the toxin, protease and lipase families, for example alpha-hemolysin, cyclolysin, colicin V, siderophores, bacteriocin, subtilin, competence factor and pediocin (from EC:7.4.2.5). molecular_function owl:Class GO:0140359 biolink:NamedThing ABC-type transporter activity Primary active transporter characterized by two nucleotide-binding domains and two transmembrane domains. Uses the energy generated from ATP hydrolysis to drive the transport of a substance across a membrane. tmpzr1t_l9r_go_relaxed.owl ABC-type efflux permease activity|ABC-type efflux porter activity|ATP-binding cassette (ABC) transporter activity|ABC-type uptake permease activity|ATP binding cassette transporter|ABC-type transmembrane transporter activity|ATP-binding cassette transporter|ABC transporter https://github.com/geneontology/go-ontology/issues/20529|https://github.com/geneontology/go-ontology/issues/21273 Reactome:R-HSA-266070|Reactome:R-HSA-5683325|Reactome:R-HSA-9661405|Wikipedia:ATP-binding_cassette_transporter|Reactome:R-HSA-5223313|Reactome:R-HSA-5387389|Reactome:R-HSA-5362459|TC:3.A.1 pg 2019-06-25T19:08:14Z molecular_function owl:Class GO:0018190 biolink:NamedThing protein octanoylation The modification of a protein amino acid by formation of an ester or amide with octanoic acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid octanoylation biological_process owl:Class GO:0006497 biolink:NamedThing protein lipidation The covalent attachment of lipid groups to an amino acid in a protein. tmpzr1t_l9r_go_relaxed.owl lipid:protein modification|protein amino acid lipidation RESID:AA0308|RESID:AA0309|RESID:AA0307|RESID:AA0078|RESID:AA0059|RESID:AA0103|RESID:AA0080|RESID:AA0158|RESID:AA0107|RESID:AA0223|RESID:AA0077|RESID:AA0316|RESID:AA0106|RESID:AA0060|RESID:AA0290|RESID:AA0102|RESID:AA0161|RESID:AA0159|RESID:AA0104|RESID:AA0163|RESID:AA0079|RESID:AA0162|RESID:AA0160|RESID:AA0166 For non-covalent interactions with a lipid, consider instead the term 'lipid binding ; GO:0008289' and its children. GO:0042050 biological_process owl:Class GO:2001155 biolink:NamedThing negative regulation of glycolytic fermentation to ethanol Any process that stops, prevents or reduces the frequency, rate or extent of glucose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucose fermentation to ethanol|negative regulation of ethanol fermentation mcc 2011-10-27T02:39:05Z biological_process owl:Class GO:0052865 biolink:NamedThing 1-deoxy-D-xylulose 5-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 1-deoxy-D-xylulose 5-phosphate, the 5-phospho derivative of 1-deoxy-D-xylulose. 1-deoxy-D-xylulose 5-phosphate is an intermediate in the non-mevalonate pathway and a common precursor for isoprenoid, thiamin, and pyridoxol biosynthesis. tmpzr1t_l9r_go_relaxed.owl 1-deoxy-D-xylulose 5-phosphate synthesis|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate formation|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate biosynthetic process|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate synthesis|1-deoxy-D-xylulose 5-phosphate formation|1-deoxy-D-xylulose 5-phosphate anabolism|1-deoxy-D-xylulose 5-phosphate biosynthesis|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate biosynthesis|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate anabolism UniPathway:UPA00064 biological_process owl:Class GO:0061088 biolink:NamedThing regulation of sequestering of zinc ion Any process that modulates the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:38:53Z biological_process owl:Class GO:0034417 biolink:NamedThing bisphosphoglycerate 3-phosphatase activity Catalysis of the reaction: 2,3-diphosphoglycerate + H2O = 2-phospho-D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl 2,3-bisphospho-D-glycerate 3-phosphohydrolase activity EC:3.1.3.80|KEGG_REACTION:R09532|RHEA:27381|MetaCyc:RXN-11102 molecular_function owl:Class GO:0034416 biolink:NamedThing bisphosphoglycerate phosphatase activity Catalysis of the reaction: 2,3-diphosphoglycerate + H2O = phosphoglycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl diphosphoglycerate phosphatase activity|glycerate-2,3-diphosphate phosphatase activity|2,3-bisphosphoglycerate phosphatase activity|2,3-diphosphoglycerate phosphatase activity|2,3-diphosphoglyceric acid phosphatase activity molecular_function owl:Class GO:0032816 biolink:NamedThing positive regulation of natural killer cell activation Any process that activates or increases the frequency, rate or extent of natural killer cell activation. tmpzr1t_l9r_go_relaxed.owl stimulation of natural killer cell activation|positive regulation of NK cell activation|activation of natural killer cell activation|up regulation of natural killer cell activation|upregulation of natural killer cell activation|up-regulation of natural killer cell activation biological_process owl:Class GO:0051251 biolink:NamedThing positive regulation of lymphocyte activation Any process that activates or increases the frequency, rate or extent of lymphocyte activation. tmpzr1t_l9r_go_relaxed.owl up regulation of lymphocyte activation|upregulation of lymphocyte activation|activation of lymphocyte activation|stimulation of lymphocyte activation|up-regulation of lymphocyte activation biological_process owl:Class GO:0051414 biolink:NamedThing response to cortisol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions. tmpzr1t_l9r_go_relaxed.owl response to hydrocortisone stimulus|response to cortisol stimulus biological_process owl:Class GO:0060493 biolink:NamedThing mesenchymal-endodermal cell signaling involved in lung induction Any process that mediates the transfer of information from a mesenchymal cell to an endodermal cell in the foregut and contributes to the formation of the lung bud. tmpzr1t_l9r_go_relaxed.owl mesenchymal-endodermal cell signalling involved in lung induction biological_process owl:Class GO:0060497 biolink:NamedThing mesenchymal-endodermal cell signaling Any process that mediates the transfer of information between a mesenchymal cell and an endodermal cell. tmpzr1t_l9r_go_relaxed.owl mesenchymal-endodermal cell signalling biological_process owl:Class GO:0060819 biolink:NamedThing inactivation of X chromosome by genetic imprinting Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by genetic imprinting. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T10:56:06Z biological_process owl:Class GO:0006349 biolink:NamedThing regulation of gene expression by genetic imprinting Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself. tmpzr1t_l9r_go_relaxed.owl regulation of gene expression by DNA imprinting Wikipedia:Genomic_imprinting biological_process owl:Class GO:0090105 biolink:NamedThing pancreatic E cell development The process whose specific outcome is the progression of a pancreatic E cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-18T11:51:00Z biological_process owl:Class GO:0035863 biolink:NamedThing dITP catabolic process The chemical reactions and pathways resulting in the breakdown of dITP, a deoxyinosine phosphate compound having a triphosphate group at the 5'-position. tmpzr1t_l9r_go_relaxed.owl dITP breakdown|deoxyinosine 5'-triphosphate catabolic process|2'-Deoxyinosine 5'-triphosphate catabolic process|dITP catabolism|deoxyinosine triphosphate (2'-deoxyinosine 5'-triphosphate) catabolic process|2'-Deoxyinosine-5'-triphosphate catabolic process|dITP degradation bf 2011-05-25T02:55:21Z biological_process owl:Class GO:0009155 biolink:NamedThing purine deoxyribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleotide catabolism|purine deoxyribonucleotide degradation|purine deoxyribonucleotide breakdown biological_process owl:Class GO:2000363 biolink:NamedThing positive regulation of prostaglandin-E synthase activity Any process that activates or increases the frequency, rate or extent of prostaglandin-E synthase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of prostaglandin R-prostaglandin E isomerase activity|positive regulation of PGE2 isomerase activity|positive regulation of PGH-PGE isomerase activity|positive regulation of prostaglandin endoperoxide E isomerase activity|positive regulation of prostaglandin H-E isomerase activity|positive regulation of endoperoxide isomerase activity|positive regulation of (5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate E-isomerase activity|positive regulation of prostaglandin endoperoxide E2 isomerase activity|positive regulation of PGE isomerase activity|positive regulation of Prostaglandin-H(2) E-isomerase activity|positive regulation of prostaglandin-H2 E-isomerase activity bf 2011-02-03T04:05:42Z biological_process owl:Class GO:0010912 biolink:NamedThing positive regulation of isomerase activity Any process that increases the activity of an isomerase. An isomerase catalyzes the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036494 biolink:NamedThing positive regulation of translation initiation in response to endoplasmic reticulum stress Any process that activates, or increases the frequency, rate or extent of translation initiation as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl positive regulation of translation initiation in response to ER stress bf 2015-02-05T10:11:32Z biological_process owl:Class GO:0032058 biolink:NamedThing positive regulation of translational initiation in response to stress Any process that activates or increases the frequency, rate or extent of translation initiation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl upregulation of translation initiation in response to stress|stimulation of translation initiation in response to stress|up regulation of translation initiation in response to stress|activation of translation initiation in response to stress|up-regulation of translation initiation in response to stress biological_process owl:Class GO:1901040 biolink:NamedThing negative regulation of peptide antigen transport Any process that stops, prevents or reduces the frequency, rate or extent of peptide antigen transport. tmpzr1t_l9r_go_relaxed.owl inhibition of peptide antigen transport|down regulation of peptide antigen transport|downregulation of peptide antigen transport|down-regulation of peptide antigen transport bf 2012-06-22T04:08:18Z biological_process owl:Class GO:0045744 biolink:NamedThing negative regulation of G protein-coupled receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of G protein coupled receptor protein signaling pathway|negative regulation of GPCR protein signaling pathway|negative regulation of G-protein coupled receptor protein signalling pathway|down-regulation of G-protein coupled receptor protein signaling pathway|negative regulation of G-protein coupled receptor protein signaling pathway|downregulation of G-protein coupled receptor protein signaling pathway|down regulation of G-protein coupled receptor protein signaling pathway|inhibition of G-protein coupled receptor protein signaling pathway|negative regulation of G-protein-coupled receptor protein signalling pathway|negative regulation of GPCR protein signalling pathway|negative regulation of G protein coupled receptor protein signalling pathway biological_process owl:Class GO:0071432 biolink:NamedThing peptide mating pheromone maturation involved in positive regulation of conjugation with cellular fusion The formation of a mature peptide mating pheromone by proteolysis and/or modification of a peptide precursor, occurring in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl peptide mating pheromone processing involved in conjugation with cellular fusion|a-factor processing (proteolytic)|peptide mating pheromone formation involved in conjugation with cellular fusion|alpha-factor maturation|mating-type peptide pheromone maturation involved in conjugation with cellular fusion mah 2009-12-16T10:46:50Z biological_process owl:Class GO:0007323 biolink:NamedThing peptide pheromone maturation The generation of a mature, active peptide pheromone via processes unique to its processing and modification. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl pheromone processing GO:0007324|GO:0007326|GO:0046613 biological_process owl:Class GO:0034666 biolink:NamedThing integrin alpha2-beta1 complex An integrin complex that comprises one alpha2 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl VLA-2 complex|ITGA2-ITGB1 complex cellular_component owl:Class GO:0075111 biolink:NamedThing suppression by symbiont of host receptor-mediated signal transduction Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host receptor-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "negative regulation by host of symbiont receptor-mediated signal transduction ; GO:0075080". biological_process owl:Class GO:0052029 biolink:NamedThing suppression by symbiont of host signal transduction pathway Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the host signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host signal transduction pathway|negative regulation by organism of signal transduction in other organism involved in symbiotic interaction|down-regulation by symbiont of host signal transduction pathway|downregulation by symbiont of host signal transduction pathway|inhibition by symbiont of host signal transduction pathway|negative modulation by organism of host signal transduction pathway|negative regulation by symbiont of host signal transduction pathway GO:0052493 biological_process owl:Class GO:0045753 biolink:NamedThing negative regulation of acetate catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl inhibition of acetate catabolic process|negative regulation of acetate catabolism|downregulation of acetate catabolic process|negative regulation of acetate breakdown|down-regulation of acetate catabolic process|down regulation of acetate catabolic process|negative regulation of acetate degradation biological_process owl:Class GO:1901274 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconic acid biosynthetic process The chemical reactions and pathways resulting in the formation of 2-dehydro-3-deoxy-D-gluconic acid. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-D-gluconic acid formation|2-dehydro-3-deoxy-D-gluconic acid anabolism|2-dehydro-3-deoxy-D-gluconic acid biosynthesis|2-dehydro-3-deoxy-D-gluconic acid synthesis yaf 2012-08-17T14:46:44Z biological_process owl:Class GO:0046364 biolink:NamedThing monosaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. tmpzr1t_l9r_go_relaxed.owl monosaccharide synthesis|monosaccharide formation|monosaccharide biosynthesis|monosaccharide anabolism biological_process owl:Class GO:0046006 biolink:NamedThing regulation of activated T cell proliferation Any process that modulates the frequency, rate or extent of activated T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of activated T-cell proliferation|regulation of activated T lymphocyte proliferation|regulation of activated T-lymphocyte proliferation biological_process owl:Class GO:0001928 biolink:NamedThing regulation of exocyst assembly Any process that modulates the frequency, rate or extent of exocyst assembly. tmpzr1t_l9r_go_relaxed.owl Note that the assembly is regulated by several small GTPases of the Rab and Rho families. biological_process owl:Class GO:0036180 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to biotic stimulus The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a biotic (living) stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-30T04:12:40Z biological_process owl:Class GO:0044182 biolink:NamedThing filamentous growth of a population of unicellular organisms The process in which a group of unicellular organisms grow in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl jl 2009-09-25T10:18:32Z biological_process owl:Class GO:1904478 biolink:NamedThing regulation of intestinal absorption Any process that modulates the frequency, rate or extent of intestinal absorption. tmpzr1t_l9r_go_relaxed.owl rl 2015-07-13T15:58:47Z biological_process owl:Class GO:0044058 biolink:NamedThing regulation of digestive system process Any process that modulates the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035603 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in hemopoiesis The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which contributes to hemopoiesis. tmpzr1t_l9r_go_relaxed.owl FGFR signaling pathway involved in hematopoiesis|fibroblast growth factor receptor signalling pathway involved in hemopoiesis|FGF receptor signaling pathway involved in hematopoiesis|fibroblast growth factor receptor signaling pathway involved in hematopoiesis bf 2010-11-15T11:09:46Z biological_process owl:Class GO:0008543 biolink:NamedThing fibroblast growth factor receptor signaling pathway The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl FGF receptor signaling pathway|FGFR signaling pathway|fibroblast growth factor receptor signalling pathway|FGF receptor signalling pathway biological_process owl:Class GO:0009610 biolink:NamedThing response to symbiotic fungus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic fungus, a fungus living in close physical association with another organism. tmpzr1t_l9r_go_relaxed.owl response to symbiotic fungi biological_process owl:Class GO:0009620 biolink:NamedThing response to fungus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. tmpzr1t_l9r_go_relaxed.owl response to fungi GO:0009621 biological_process owl:Class GO:0098628 biolink:NamedThing peptidyl-N-phospho-arginine dephosphorylation The removal of phosphate residues from peptidyl-N-phospho-arginine to form peptidyl-arginine. tmpzr1t_l9r_go_relaxed.owl dos 2014-04-17T18:03:31Z biological_process owl:Class GO:0006470 biolink:NamedThing protein dephosphorylation The process of removing one or more phosphoric residues from a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid dephosphorylation biological_process owl:Class GO:0005914 biolink:NamedThing spot adherens junction A small cell-cell adherens junction assembled during the cellularization stage of insect embyrogenesis; spot adherens junctions later fuse to form the zonula adherens. tmpzr1t_l9r_go_relaxed.owl punctum adherens|dense plaque cellular_component owl:Class GO:0005912 biolink:NamedThing adherens junction A cell-cell junction composed of the epithelial cadherin-catenin complex. The epithelial cadherins, or E-cadherins, of each interacting cell extend through the plasma membrane into the extracellular space and bind to each other. The E-cadherins bind to catenins on the cytoplasmic side of the membrane, where the E-cadherin-catenin complex binds to cytoskeletal components and regulatory and signaling molecules. tmpzr1t_l9r_go_relaxed.owl cell-cell adherens junction Wikipedia:Adherens_junction GO:0005913 cellular_component owl:Class GO:1903382 biolink:NamedThing negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of an endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway|down regulation of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|downregulation of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|downregulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway|down regulation of ER stress-induced neuron intrinsic apoptotic signaling pathway|downregulation of ER stress-induced neuron intrinsic apoptotic signaling pathway|inhibition of ER stress-induced neuron intrinsic apoptotic signaling pathway|inhibition of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|inhibition of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway|down-regulation of ER stress-induced neuron intrinsic apoptotic signaling pathway|negative regulation of ER stress-induced neuron intrinsic apoptotic signaling pathway|negative regulation of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|down-regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway|down-regulation of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress bf 2014-08-27T08:45:38Z biological_process owl:Class GO:0015225 biolink:NamedThing biotin transmembrane transporter activity Enables the transfer of biotin from one side of a membrane to the other. Biotin is cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. tmpzr1t_l9r_go_relaxed.owl biotin transporter activity|vitamin H transporter activity|vitamin B7 transporter activity RHEA:28458 al 2012-11-08T14:18:56Z GO:1901603 molecular_function owl:Class GO:0006681 biolink:NamedThing galactosylceramide metabolic process The chemical reactions and pathways involving galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl galactosylceramide metabolism biological_process owl:Class GO:1900961 biolink:NamedThing positive regulation of 17-methylnonadec-1-ene metabolic process Any process that activates or increases the frequency, rate or extent of 17-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of 17-methylnonadec-1-ene metabolism|positive regulation of 17-methylnonadec-1-ene metabolism|activation of 17-methylnonadec-1-ene metabolism|up regulation of 17-methylnonadec-1-ene metabolism|upregulation of 17-methylnonadec-1-ene metabolic process|up-regulation of 17-methylnonadec-1-ene metabolism|up-regulation of 17-methylnonadec-1-ene metabolic process|activation of 17-methylnonadec-1-ene metabolic process|up regulation of 17-methylnonadec-1-ene metabolic process tt 2012-06-14T03:29:59Z biological_process owl:Class GO:1900959 biolink:NamedThing regulation of 17-methylnonadec-1-ene metabolic process Any process that modulates the frequency, rate or extent of 17-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of 17-methylnonadec-1-ene metabolism tt 2012-06-14T03:29:27Z biological_process owl:Class GO:2000911 biolink:NamedThing positive regulation of sterol import Any process that activates or increases the frequency, rate or extent of sterol import. tmpzr1t_l9r_go_relaxed.owl positive regulation of sterol influx|positive regulation of sterol uptake bf 2011-07-29T01:25:17Z biological_process owl:Class GO:0061511 biolink:NamedThing centriole elongation The centrosome organization process by which a centriole increases in length as part of the process of replication. tmpzr1t_l9r_go_relaxed.owl dph 2013-03-22T09:06:27Z biological_process owl:Class GO:0022402 biolink:NamedThing cell cycle process The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905717 biolink:NamedThing positive regulation of cornification Any process that activates or increases the frequency, rate or extent of cornification. tmpzr1t_l9r_go_relaxed.owl up regulation of cornification|activation of cornification|up-regulation of cornification|upregulation of cornification pga 2016-11-24T13:53:21Z biological_process owl:Class GO:0070664 biolink:NamedThing negative regulation of leukocyte proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of leukocyte proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of leukocyte proliferation|down regulation of leukocyte proliferation|inhibition of leukocyte proliferation|downregulation of leukocyte proliferation mah 2009-05-28T05:34:50Z biological_process owl:Class GO:0110140 biolink:NamedThing flagellum attachment zone organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a flagellum attachment zone. FAZ is a network of cytoskeletal and membranous connections responsible for the lateral attachment of the cilium to the cell body in some trypanosomatid species. tmpzr1t_l9r_go_relaxed.owl flagellum attachment zone organisation|FAZ organization kmv 2019-03-04T19:55:50Z biological_process owl:Class GO:0034330 biolink:NamedThing cell junction organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell junction. A cell junction is a specialized region of connection between two cells or between a cell and the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl cell junction organisation|cell junction biogenesis|cell junction assembly and maintenance biological_process owl:Class GO:1904028 biolink:NamedThing positive regulation of collagen fibril organization Any process that activates or increases the frequency, rate or extent of collagen fibril organization. tmpzr1t_l9r_go_relaxed.owl up regulation of collagen fibril organization|up-regulation of collagen fibril organisation|up-regulation of collagen fibril organization|positive regulation of fibrillar collagen organization|activation of fibrillar collagen organization|up regulation of fibrillar collagen organization|up regulation of collagen fibril organisation|activation of collagen fibril organization|upregulation of collagen fibril organisation|activation of collagen fibril organisation|positive regulation of collagen fibril organisation|up-regulation of fibrillar collagen organization|upregulation of collagen fibril organization|upregulation of fibrillar collagen organization ae 2015-03-12T12:37:06Z biological_process owl:Class GO:1904026 biolink:NamedThing regulation of collagen fibril organization Any process that modulates the frequency, rate or extent of collagen fibril organization. tmpzr1t_l9r_go_relaxed.owl regulation of collagen fibril organisation|regulation of fibrillar collagen organization|regulation of collagen fibrillogenesis ae 2015-03-12T12:36:52Z biological_process owl:Class GO:0120082 biolink:NamedThing smooth endoplasmic reticulum cisterna A subcompartment of the smooth endoplasmic reticulum consisting of lumenal expansion into a flattened, disc-shaped cavity. tmpzr1t_l9r_go_relaxed.owl krc 2017-07-05T23:32:11Z cellular_component owl:Class GO:0140210 biolink:NamedThing protein transport along microtubule to kinetochore Any process in which a protein is transported to the kinetochore along a microtubule. tmpzr1t_l9r_go_relaxed.owl pg 2018-03-22T07:05:21Z biological_process owl:Class GO:0071556 biolink:NamedThing integral component of lumenal side of endoplasmic reticulum membrane The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to lumenal side of ER membrane|integral to lumenal leaflet of endoplasmic reticulum membrane|integral to lumenal side of endoplasmic reticulum membrane|integral to ER membrane, lumenal side mah 2010-01-15T10:56:58Z cellular_component owl:Class GO:0030176 biolink:NamedThing integral component of endoplasmic reticulum membrane The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to ER membrane|integral to endoplasmic reticulum membrane|ER integral membrane protein cellular_component owl:Class GO:0030250 biolink:NamedThing guanylate cyclase activator activity Binds to and increases the activity of guanylate cyclase. tmpzr1t_l9r_go_relaxed.owl guanylin molecular_function owl:Class GO:0120248 biolink:NamedThing acetylenic compound catabolic process The chemical reactions and pathways resulting in the breakdown of an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C). tmpzr1t_l9r_go_relaxed.owl alkyne substituted compound catabolism|alkyne substituted compound degradation|alkyne substituted compound breakdown|alkyne substituted compound catabolic process https://github.com/geneontology/go-ontology/issues/19842 krc 2020-08-18T01:02:52Z biological_process owl:Class GO:0120246 biolink:NamedThing acetylenic compound metabolic process The chemical reactions and pathways involving an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C). tmpzr1t_l9r_go_relaxed.owl alkyne substituted compound metabolism|alkyne substituted compound metabolic process https://github.com/geneontology/go-ontology/issues/19842 krc 2020-08-18T00:54:23Z biological_process owl:Class GO:0034665 biolink:NamedThing integrin alpha1-beta1 complex An integrin complex that comprises one alpha1 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl ITGA1-ITGB1 complex|VLA-1 complex|alpha1-beta1 integrin complex cellular_component owl:Class GO:0047085 biolink:NamedThing hydroxyphenylacetonitrile 2-monooxygenase activity Catalysis of the reaction: 4-hydroxyphenylacetonitrile + H(+) + NADPH + O(2) = 4-hydroxymandelonitrile + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetonitrile,NADPH:oxygen oxidoreductase (2-hydroxylating)|4-hydroxyphenylacetonitrile hydroxylase activity|4-hydroxyphenylacetonitrile monooxygenase activity KEGG_REACTION:R02708|MetaCyc:1.14.13.42-RXN|RHEA:23740 molecular_function owl:Class GO:1903243 biolink:NamedThing negative regulation of cardiac muscle hypertrophy in response to stress Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle hypertrophy in response to stress. tmpzr1t_l9r_go_relaxed.owl down regulation of cardiac muscle hypertrophy in response to stress|downregulation of cardiac muscle hypertrophy in response to stress|down-regulation of cardiac muscle hypertrophy in response to stress|inhibition of cardiac muscle hypertrophy in response to stress rl 2014-08-01T16:31:42Z biological_process owl:Class GO:1903072 biolink:NamedThing regulation of death-inducing signaling complex assembly Any process that modulates the frequency, rate or extent of death-inducing signaling complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of death domain-mediated complex assembly|regulation of DISC assembly|regulation of death-inducing signaling complex formation|regulation of DD-mediated complex assembly|regulation of death-inducing signalling complex assembly|regulation of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|regulation of DISC formation bf 2014-05-29T09:33:13Z biological_process owl:Class GO:0120324 biolink:NamedThing procyclogenesis The morphological, biochemical and genetic changes that induce the differentiation of bloodstream form trypomastigotes into procyclic trypomastigotes in some of the Trypanosomatidae species such as Trypanosoma brucei. This process occurs inside the midgut of the tsetse fly vectors in T. brucei. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/pull/21924 krc 2021-08-03T19:53:17Z biological_process owl:Class GO:0044114 biolink:NamedThing development of symbiont in host The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl development of symbiont in host intercellular space|development of symbiont in host vascular tissue This term partially replaces the obsolete term 'growth or development of symbiont in host ; GO:0044412'. See also 'biological process involved in interaction with host ; GO:0051701. jl 2009-07-30T03:39:25Z GO:0044122|GO:0044124 biological_process owl:Class GO:1903704 biolink:NamedThing negative regulation of production of siRNA involved in RNA interference Any process that stops, prevents or reduces the frequency, rate or extent of production of siRNA involved in RNA interference. tmpzr1t_l9r_go_relaxed.owl negative regulation of RNA interference, production of siRNA|down-regulation of production of guide RNAs involved in RNA interference|downregulation of production of siRNA involved in RNA interference|negative regulation of production of guide RNAs involved in RNA interference|down-regulation of production of siRNA involved in RNA interference|inhibition of production of guide RNAs involved in RNA interference|downregulation of RNA interference, production of siRNA|down regulation of RNA interference, production of guide RNAs|inhibition of RNA interference, production of siRNA|down regulation of production of guide RNAs involved in RNA interference|down regulation of production of siRNA involved in RNA interference|inhibition of production of siRNA involved in RNA interference|down regulation of RNA interference, production of siRNA|negative regulation of RNA interference, production of guide RNAs|downregulation of production of guide RNAs involved in RNA interference|down-regulation of RNA interference, production of guide RNAs|downregulation of RNA interference, production of guide RNAs|down-regulation of RNA interference, production of siRNA|inhibition of RNA interference, production of guide RNAs nc 2014-12-03T15:13:22Z biological_process owl:Class GO:1904443 biolink:NamedThing positive regulation of thyroid gland epithelial cell proliferation Any process that activates or increases the frequency, rate or extent of thyroid gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of thyroid gland epithelial cell proliferation|up regulation of thyroid follicular cell proliferation|activation of thyroid gland epithelial cell proliferation|up-regulation of thyroid gland epithelial cell proliferation|up regulation of Hurthle cell proliferation|activation of Hurthle cell proliferation|upregulation of Hurthle cell proliferation|up regulation of thyroid gland epithelial cell proliferation|up-regulation of Hurthle cell proliferation|upregulation of thyroid follicular cell proliferation|activation of thyroid follicular cell proliferation|up-regulation of thyroid follicular cell proliferation|positive regulation of thyroid follicular cell proliferation|positive regulation of Hurthle cell proliferation sl 2015-07-06T15:41:21Z biological_process owl:Class GO:0061430 biolink:NamedThing bone trabecula morphogenesis The process of shaping a trabecula in bone. A trabecula is a tissue element in the form of a small beam, strut or rod. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-07T10:15:36Z biological_process owl:Class GO:0061383 biolink:NamedThing trabecula morphogenesis The process of shaping a trabecula in an organ. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue. tmpzr1t_l9r_go_relaxed.owl dph 2010-12-02T08:51:45Z biological_process owl:Class GO:0031165 biolink:NamedThing integral component of contractile vacuolar membrane The component of the contractile vacuolar membrane consisting of gene products that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer. tmpzr1t_l9r_go_relaxed.owl integral to contractile vacuolar membrane cellular_component owl:Class GO:0031311 biolink:NamedThing intrinsic component of contractile vacuolar membrane The component of the contractile vacuolar membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to contractile vacuolar membrane cellular_component owl:Class GO:0045597 biolink:NamedThing positive regulation of cell differentiation Any process that activates or increases the frequency, rate or extent of cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of cell differentiation|upregulation of cell differentiation|activation of cell differentiation|stimulation of cell differentiation|up-regulation of cell differentiation biological_process owl:Class GO:0016581 biolink:NamedThing NuRD complex An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins. tmpzr1t_l9r_go_relaxed.owl NRD complex|Mi-2 complex|nucleosome remodeling and histone deacetylation complex cellular_component owl:Class GO:0000118 biolink:NamedThing histone deacetylase complex A protein complex that possesses histone deacetylase activity. tmpzr1t_l9r_go_relaxed.owl HDAC complex Note that this term represents a location, not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'histone deacetylase activity ; GO:0004407'. cellular_component owl:Class GO:0031634 biolink:NamedThing replication fork barrier binding Binding to replication fork barriers, sites that inhibit the progress of replication forks. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990837 biolink:NamedThing sequence-specific double-stranded DNA binding Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding. tmpzr1t_l9r_go_relaxed.owl sequence-specific dsDNA binding sl 2015-08-25T17:30:06Z molecular_function owl:Class GO:1902565 biolink:NamedThing positive regulation of neutrophil activation Any process that activates or increases the frequency, rate or extent of neutrophil activation. tmpzr1t_l9r_go_relaxed.owl upregulation of neutrophil activation|up-regulation of neutrophil activation|up regulation of neutrophil activation|activation of neutrophil activation ecu 2013-12-10T15:33:26Z biological_process owl:Class GO:1902563 biolink:NamedThing regulation of neutrophil activation Any process that modulates the frequency, rate or extent of neutrophil activation. tmpzr1t_l9r_go_relaxed.owl ecu 2013-12-10T15:33:08Z biological_process owl:Class GO:0060999 biolink:NamedThing positive regulation of dendritic spine development Any process that increases the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:27:21Z biological_process owl:Class GO:0030238 biolink:NamedThing male sex determination The specification of male sex of an individual organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061891 biolink:NamedThing calcium ion sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of calcium ions (Ca2+). tmpzr1t_l9r_go_relaxed.owl dph 2017-06-01T23:37:01Z molecular_function owl:Class GO:0002898 biolink:NamedThing regulation of central B cell deletion Any process that modulates the frequency, rate, or extent of central B cell deletion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043408 biolink:NamedThing regulation of MAPK cascade Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAP kinase (MAPK) cascade. tmpzr1t_l9r_go_relaxed.owl regulation of mitogen-activated protein kinase kinase kinase cascade|regulation of mitogen activated protein kinase kinase kinase cascade|regulation of mitogen-activated protein kinase cascade|regulation of MAPKKK cascade|regulation of MAP kinase cascade|regulation of mitogen activated protein kinase cascade|regulation of MAP kinase kinase kinase cascade biological_process owl:Class GO:1904404 biolink:NamedThing response to formaldehyde Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a formaldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T21:14:04Z biological_process owl:Class GO:0032355 biolink:NamedThing response to estradiol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen. tmpzr1t_l9r_go_relaxed.owl response to estradiol stimulus|response to E2 stimulus biological_process owl:Class GO:0060808 biolink:NamedThing positive regulation of mesodermal to mesenchymal transition involved in gastrulation Any process that increases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-06T02:32:53Z biological_process owl:Class GO:0010718 biolink:NamedThing positive regulation of epithelial to mesenchymal transition Any process that increases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition is where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046071 biolink:NamedThing dGTP biosynthetic process The chemical reactions and pathways resulting in the formation of dGTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl dGTP synthesis|dGTP biosynthesis|dGTP formation|dGTP anabolism biological_process owl:Class GO:0046070 biolink:NamedThing dGTP metabolic process The chemical reactions and pathways involving dGTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl dGTP metabolism biological_process owl:Class GO:1903088 biolink:NamedThing 5-amino-1-ribofuranosylimidazole-4-carboxamide transmembrane transport The process in which 5-amino-1-ribofuranosylimidazole-4-carboxamide is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl mcc 2014-06-02T20:34:58Z biological_process owl:Class GO:0072353 biolink:NamedThing cellular age-dependent response to reactive oxygen species Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-12T11:27:27Z biological_process owl:Class GO:0001315 biolink:NamedThing age-dependent response to reactive oxygen species Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl age-dependent response to active oxygen species|age-dependent response to reactive oxidative species|age-dependent response to ROI|age-dependent response to ROS|age-dependent response to reactive oxygen intermediate|age-dependent response to AOS biological_process owl:Class GO:0015789 biolink:NamedThing UDP-N-acetylgalactosamine transmembrane transport The directed movement of UDP-N-acetylgalactosamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-N-acetylgalactosamine is a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylgalactosamine transport biological_process owl:Class GO:0005854 biolink:NamedThing nascent polypeptide-associated complex A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. tmpzr1t_l9r_go_relaxed.owl NAC|NACA cellular_component owl:Class GO:0043223 biolink:NamedThing cytoplasmic SCF ubiquitin ligase complex A ubiquitin ligase complex, located in the cytoplasm, in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). tmpzr1t_l9r_go_relaxed.owl cytoplasmic cullin complex|cytoplasmic Skp1/Cul1/F-box protein complex|cytoplasmic SCF complex cellular_component owl:Class GO:0090028 biolink:NamedThing positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion Any process that increases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:25:27Z biological_process owl:Class GO:0010969 biolink:NamedThing regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion Any process that modulates the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-20T11:54:57Z biological_process owl:Class GO:0003241 biolink:NamedThing growth involved in heart morphogenesis Developmental growth that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:28:46Z biological_process owl:Class GO:0006709 biolink:NamedThing progesterone catabolic process The chemical reactions and pathways resulting in the breakdown of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants. tmpzr1t_l9r_go_relaxed.owl progesterone breakdown|progesterone degradation|progesterone catabolism biological_process owl:Class GO:0120256 biolink:NamedThing olefinic compound catabolic process The chemical reactions and pathways resulting in the breakdown of an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C). tmpzr1t_l9r_go_relaxed.owl alkene substituted compound degradation|alkene substituted compound catabolic process|alkene substituted compound catabolism|alkene substituted compound breakdown https://github.com/geneontology/go-ontology/issues/19936 krc 2020-09-02T23:30:41Z biological_process owl:Class GO:0019685 biolink:NamedThing photosynthesis, dark reaction A complex cycle of enzyme-mediated reactions which catalyzes the reduction of carbon dioxide to sugar. As well as carbon dioxide the cycle requires reducing power in the form of reduced nicotinamide adenine dinucleotide phosphate (NADP) and chemical energy in the form of adenosine triphosphate (ATP). The reduced NADP (NADPH) and ATP are produced by the 'light' reactions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016051 biolink:NamedThing carbohydrate biosynthetic process The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl carbohydrate biosynthesis|anabolic carbohydrate metabolic process|anabolic carbohydrate metabolism|carbohydrate anabolism|carbohydrate formation|carbohydrate synthesis GO:0006093 biological_process owl:Class GO:0061656 biolink:NamedThing SUMO conjugating enzyme activity Isoenergetic transfer of SUMO from one protein to another via the reaction X-SUMO + Y -> Y-SUMO + X, where both the X-SUMO and Y-SUMO linkages are thioester bonds between the C-terminal amino acid of SUMO and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:33:20Z molecular_function owl:Class GO:0019789 biolink:NamedThing SUMO transferase activity Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages. tmpzr1t_l9r_go_relaxed.owl SMT3 conjugating enzyme|SUMO conjugating enzyme activity Reactome:R-HSA-4719413|Reactome:R-HSA-4551683|Reactome:R-HSA-3968362|Reactome:R-HSA-3782535|Reactome:R-HSA-3000348|Reactome:R-HSA-4551768|Reactome:R-HSA-5684052|Reactome:R-HSA-4551616|Reactome:R-HSA-4755479|Reactome:R-HSA-4568863|Reactome:R-HSA-3900047|Reactome:R-HSA-4570485|Reactome:R-HSA-3000411|Reactome:R-HSA-3927959|Reactome:R-HSA-4341070|Reactome:R-HSA-3900070|Reactome:R-HSA-4086059|Reactome:R-HSA-4568846|Reactome:R-HSA-4570528|Reactome:R-HSA-5228525|Reactome:R-HSA-4551648|Reactome:R-HSA-3903017|Reactome:R-HSA-4570499|Reactome:R-HSA-4755526|Reactome:R-HSA-4755536|Reactome:R-HSA-4570493|Reactome:R-HSA-4615839|Reactome:R-HSA-4551721|Reactome:R-HSA-4085331|Reactome:R-HSA-4655431|Reactome:R-HSA-4570554|Reactome:R-HSA-8956365|Reactome:R-HSA-4341072|Reactome:R-HSA-4090288|Reactome:R-HSA-4551724|Reactome:R-HSA-4085318|Reactome:R-HSA-4641362|Reactome:R-HSA-3000433|Reactome:R-HSA-2997616|Reactome:R-HSA-3968414|Reactome:R-HSA-4615910|Reactome:R-HSA-4551738|Reactome:R-HSA-4085372|Reactome:R-HSA-2993769|Reactome:R-HSA-4085296|Reactome:R-HSA-4717521|Reactome:R-HSA-4341025|Reactome:R-HSA-3000434|Reactome:R-HSA-4719447|Reactome:R-HSA-2997723|Reactome:R-HSA-6804468|Reactome:R-HSA-6790454|Reactome:R-HSA-4568914|Reactome:R-HSA-4755411|Reactome:R-HSA-4615933|Reactome:R-HSA-6804485|Reactome:R-HSA-4655355|Reactome:R-HSA-4641342|Reactome:R-HSA-4090390|Reactome:R-HSA-3108209|Reactome:R-HSA-3247493|Reactome:R-HSA-3296126|Reactome:R-HSA-3927824|Reactome:R-HSA-3899291|Reactome:R-HSA-3000383|Reactome:R-HSA-4090281|Reactome:R-HSA-4570553|Reactome:R-HSA-4341073|Reactome:R-HSA-3234094|Reactome:R-HSA-4719448|Reactome:R-HSA-3465545|Reactome:R-HSA-4090408|Reactome:R-HSA-4616015|Reactome:R-HSA-3900194|Reactome:R-HSA-4755494|Reactome:R-HSA-3000449|Reactome:R-HSA-4570496|Reactome:R-HSA-4615987|Reactome:R-HSA-2997706|Reactome:R-HSA-4085992|Reactome:R-HSA-4720446|Reactome:R-HSA-4719423|Reactome:R-HSA-4719424|Reactome:R-HSA-3108212|Reactome:R-HSA-3234081|Reactome:R-HSA-4615900|Reactome:R-HSA-3234084|Reactome:R-HSA-4546387|Reactome:R-HSA-4615889|Reactome:R-HSA-4720432|Reactome:R-HSA-2997709|Reactome:R-HSA-5228508|Reactome:R-HSA-4085350|Reactome:R-HSA-5228523|Reactome:R-HSA-4551655|Reactome:R-HSA-4641350|Reactome:R-HSA-4755478|Reactome:R-HSA-4719436|Reactome:R-HSA-4086083|Reactome:R-HSA-4655374|Reactome:R-HSA-4551661|Reactome:R-HSA-4570463|Reactome:R-HSA-4551604|Reactome:R-HSA-3000399|Reactome:R-HSA-3927886|Reactome:R-HSA-5228521|Reactome:R-HSA-4551727|Reactome:R-HSA-4717461|Reactome:R-HSA-4615873|Reactome:R-HSA-4570489|Reactome:R-HSA-4546386|Reactome:R-HSA-4085347|Reactome:R-HSA-4568848|Reactome:R-HSA-3900177|Reactome:R-HSA-4551649|Reactome:R-HSA-4546385|Reactome:R-HSA-2993780|Reactome:R-HSA-4551679|Reactome:R-HSA-4656914|Reactome:R-HSA-4341048|Reactome:R-HSA-4615872|Reactome:R-HSA-4615905|Reactome:R-HSA-4090284|Reactome:R-HSA-4641345|Reactome:R-HSA-5682607|Reactome:R-HSA-3108203|Reactome:R-HSA-4341016|Reactome:R-HSA-3232162|Reactome:R-HSA-4086088|Reactome:R-HSA-4655440|Reactome:R-HSA-4085994|Reactome:R-HSA-2993790|Reactome:R-HSA-4086036|Reactome:R-HSA-4570467 GO:0019949|GO:0016930 molecular_function owl:Class GO:0070371 biolink:NamedThing ERK1 and ERK2 cascade An intracellular protein kinase cascade containing at least ERK1 or ERK2 (MAPKs), a MEK (a MAPKK) and a MAP3K. The cascade may involve 4 different kinases, as it can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell. tmpzr1t_l9r_go_relaxed.owl ERK1 cascade|MAPK1 cascade|extracellular signal-regulated kinase 1/2 cascade|extracellular signal-regulated kinase 1/2 (ERK1/2) cascade|ERK cascade|MAPK3 cascade|ERK1/2 cascade|ERK2 cascade|ERK1 and ERK2 signalling pathway|ERK1 and ERK2 signaling pathway Note that this MAPKKK cascade is commonly referred to as the ERK pathway in the literature, but involves only ERK1 or ERK2 and should not be confused with cascades that involve other ERK kinases. biological_process owl:Class GO:0000165 biolink:NamedThing MAPK cascade An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain an additional tiers: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell. tmpzr1t_l9r_go_relaxed.owl MAPK signaling|MAP kinase kinase kinase cascade|MAPK signal transduction|MAPK signalling|mitogen-activated protein kinase cascade|MAPKKK cascade|MAPKKK cascade during sporulation|MAP kinase cascade|ERK/MAPK cascade Wikipedia:Mitogen-activated_protein_kinase|Wikipedia:MAPK_cascade MAPK cascades lie downstream of many cell surface receptors and cooperate in transmitting various extracellular signals to the nucleus. One way by which the specificity of each cascade is regulated is through the existence of several distinct components in each tier of the different cascades. The cascades are typically named according to the component in the MAPK tier. GO:0007255 biological_process owl:Class GO:0019334 biolink:NamedThing p-cymene catabolic process The chemical reactions and pathways resulting in the breakdown of p-cymene, 1-methyl-4-isopropylbenzene, one of the alkyl-substituted aromatic hydrocarbons found in volatile oils from over 100 plants. tmpzr1t_l9r_go_relaxed.owl p-cymene catabolism|p-cymene degradation|p-cymene breakdown MetaCyc:PWY-741 biological_process owl:Class GO:0043694 biolink:NamedThing monoterpene catabolic process The chemical reactions and pathways resulting in the breakdown of monoterpenes, terpenes with a C10 structure. tmpzr1t_l9r_go_relaxed.owl monoterpene catabolism biological_process owl:Class GO:0003963 biolink:NamedThing RNA-3'-phosphate cyclase activity Catalysis of the reaction: ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate. tmpzr1t_l9r_go_relaxed.owl RNA-3'-phosphate:RNA ligase (cyclizing, AMP-forming)|RNA 3'-terminal phosphate cyclase activity|RNA cyclase activity RHEA:23976|EC:6.5.1.4|MetaCyc:RNA-3-PHOSPHATE-CYCLASE-RXN molecular_function owl:Class GO:0140098 biolink:NamedThing catalytic activity, acting on RNA Catalytic activity that acts to modify RNA, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225|https://github.com/geneontology/go-ontology/issues/21612 pg 2017-09-14T12:05:21Z molecular_function owl:Class GO:0060759 biolink:NamedThing regulation of response to cytokine stimulus Any process that modulates the rate, frequency, or extent of a response to cytokine stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:56:12Z biological_process owl:Class GO:0015276 biolink:NamedThing ligand-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ionotropic receptor activity Reactome:R-HSA-451310|Reactome:R-HSA-451311|Reactome:R-HSA-622326|Reactome:R-HSA-622325|Reactome:R-HSA-629595 molecular_function owl:Class GO:0005216 biolink:NamedThing ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043448 biolink:NamedThing alkane catabolic process The chemical reactions and pathways resulting in the breakdown of an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2. tmpzr1t_l9r_go_relaxed.owl alkane catabolism|alkane breakdown|alkane degradation biological_process owl:Class GO:0044248 biolink:NamedThing cellular catabolic process The chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular catabolism|cellular breakdown|cellular degradation biological_process owl:Class GO:0102559 biolink:NamedThing protein-(glutamine-N5) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a [release factor]-L-glutamine = S-adenosyl-L-homocysteine + H+ + a [release factor]-N5-methyl-L-glutamine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.297|MetaCyc:RXN-14992|RHEA:42896 molecular_function owl:Class GO:1900156 biolink:NamedThing positive regulation of bone trabecula formation Any process that activates or increases the frequency, rate or extent of bone trabecula formation. tmpzr1t_l9r_go_relaxed.owl up regulation of bone trabecula formation|upregulation of bone trabecula biogenesis|upregulation of bone trabeculation|activation of bone trabecula biogenesis|upregulation of skeletal trabeculation|activation of bone trabecula formation|up-regulation of skeletal trabecula formation|upregulation of bone trabecula formation|up-regulation of bone trabecula biogenesis|upregulation of skeletal trabecula formation|up-regulation of skeletal trabecula biogenesis|activation of skeletal trabecula formation|positive regulation of skeletal trabecula formation|positive regulation of skeletal trabeculation|up regulation of skeletal trabecula formation|activation of skeletal trabecula biogenesis|positive regulation of bone trabecula biogenesis|positive regulation of skeletal trabecula biogenesis|up regulation of bone trabeculation|up-regulation of skeletal trabeculation|activation of skeletal trabeculation|up-regulation of bone trabeculation|upregulation of skeletal trabecula biogenesis|up regulation of bone trabecula biogenesis|up regulation of skeletal trabecula biogenesis|positive regulation of bone trabeculation|up regulation of skeletal trabeculation|up-regulation of bone trabecula formation|activation of bone trabeculation vk 2012-03-07T01:47:10Z biological_process owl:Class GO:0060971 biolink:NamedThing embryonic heart tube left/right pattern formation The pattern specification process that results in the subdivision of the left/right axis of the embryonic heart tube in space to define an area or volume in which specific patterns of cell differentiation will take place. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T10:22:11Z biological_process owl:Class GO:0060972 biolink:NamedThing left/right pattern formation The pattern specification process that results in the subdivision of the left/right axis in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T10:25:58Z biological_process owl:Class GO:0060787 biolink:NamedThing positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway Any process that increases the rate or extent of the formation of the posterior neural plate, the posterior end of the flat, thickened layer of ectodermal cells known as the neural plate. tmpzr1t_l9r_go_relaxed.owl positive regulation of posterior neural plate formation by fibroblast growth factor receptor signalling pathway|positive regulation of posterior neural plate formation by FGF receptor signaling pathway dph 2009-08-04T09:48:31Z biological_process owl:Class GO:0045995 biolink:NamedThing regulation of embryonic development Any process that modulates the frequency, rate or extent of embryonic development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097325 biolink:NamedThing melanocyte proliferation The multiplication or reproduction of melanocytes, resulting in the expansion of a cell population. A melanocyte is a pigment cell derived from the neural crest. It contains melanin-filled pigment granules, which give a brown to black appearance. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-08T10:10:12Z biological_process owl:Class GO:0050673 biolink:NamedThing epithelial cell proliferation The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902935 biolink:NamedThing protein localization to septin ring A process in which a protein is transported to, or maintained in, a location within a septin ring. tmpzr1t_l9r_go_relaxed.owl protein localisation in septin ring|protein localization in septin ring|protein localisation to septin ring mah 2014-04-25T13:08:17Z biological_process owl:Class GO:0044380 biolink:NamedThing protein localization to cytoskeleton A process in which a protein is transported to, or maintained in, a location within the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl protein localisation to cytoskeleton jl 2011-12-13T11:43:24Z biological_process owl:Class GO:2000808 biolink:NamedThing negative regulation of synaptic vesicle clustering Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle clustering. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-06T09:50:34Z biological_process owl:Class GO:2000807 biolink:NamedThing regulation of synaptic vesicle clustering Any process that modulates the frequency, rate or extent of synaptic vesicle clustering. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-06T09:50:30Z biological_process owl:Class GO:1903500 biolink:NamedThing negative regulation of mitotic actomyosin contractile ring assembly Any process that stops, prevents or reduces the frequency, rate or extent of mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|downregulation of mitotic actomyosin contractile ring assembly|down-regulation of contractile ring assembly involved in mitotic cytokinesis|downregulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|down regulation of mitotic actomyosin contractile ring assembly|inhibition of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|down regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|inhibition of mitotic actomyosin contractile ring assembly|negative regulation of contractile ring assembly involved in mitotic cytokinesis|down regulation of contractile ring assembly involved in mitotic cytokinesis|inhibition of contractile ring assembly involved in mitotic cytokinesis|downregulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|negative regulation of mitotic cytokinesis, actomyosin contractile ring assembly|down-regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|downregulation of contractile ring assembly involved in mitotic cytokinesis|negative regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|down-regulation of mitotic actomyosin contractile ring assembly|inhibition of actomyosin contractile ring assembly involved in cytokinesis after mitosis|down regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|down-regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis pr 2014-09-30T10:13:59Z biological_process owl:Class GO:2000432 biolink:NamedThing negative regulation of cytokinesis, actomyosin contractile ring assembly Any process that stops, prevents or reduces the frequency, rate or extent of cytokinesis, actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of contractile ring assembly vw 2011-03-03T12:18:16Z biological_process owl:Class GO:0060874 biolink:NamedThing posterior semicircular canal development The progession of the posterior semicircular canal from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:42:39Z biological_process owl:Class GO:0060872 biolink:NamedThing semicircular canal development The progression of the semicircular canal from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:36:37Z biological_process owl:Class GO:1905487 biolink:NamedThing negative regulation of anterior/posterior axon guidance Any process that stops, prevents or reduces the frequency, rate or extent of anterior/posterior axon guidance. tmpzr1t_l9r_go_relaxed.owl inhibition of anterior/posterior axon pathfinding|downregulation of anterior/posterior axon pathfinding|downregulation of anterior-posterior axon guidance|down-regulation of anterior-posterior axon guidance|down regulation of anterior-posterior axon guidance|inhibition of anterior-posterior axon guidance|inhibition of anterior/posterior axon guidance|negative regulation of anterior/posterior axon pathfinding|downregulation of anterior/posterior axon guidance|down-regulation of anterior/posterior axon guidance|down-regulation of anterior/posterior axon pathfinding|negative regulation of anterior-posterior axon guidance|down regulation of anterior/posterior axon pathfinding|down regulation of anterior/posterior axon guidance hbye 2016-09-23T13:18:41Z biological_process owl:Class GO:1905486 biolink:NamedThing regulation of anterior/posterior axon guidance Any process that modulates the frequency, rate or extent of anterior/posterior axon guidance. tmpzr1t_l9r_go_relaxed.owl regulation of anterior-posterior axon guidance|regulation of anterior/posterior axon pathfinding hbye 2016-09-23T13:18:33Z biological_process owl:Class GO:1905297 biolink:NamedThing positive regulation of neural crest cell fate specification Any process that activates or increases the frequency, rate or extent of neural crest cell fate specification. tmpzr1t_l9r_go_relaxed.owl up-regulation of neural crest cell fate specification|activation of neural crest cell fate specification|upregulation of neural crest cell fate specification|up regulation of neural crest cell fate specification rl 2016-06-28T15:14:57Z biological_process owl:Class GO:0090300 biolink:NamedThing positive regulation of neural crest formation Any process that increases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes. tmpzr1t_l9r_go_relaxed.owl tb 2010-03-12T04:08:26Z biological_process owl:Class GO:0150128 biolink:NamedThing negative regulation of interleukin-33 production Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-33 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-33 biosynthetic process|negative regulation of interleukin-33 secretion bc 2019-12-03T05:54:24Z GO:0150131|GO:0150124 biological_process owl:Class GO:0034638 biolink:NamedThing phosphatidylcholine catabolic process The chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine breakdown|phosphatidylcholine degradation|phosphatidylcholine catabolism biological_process owl:Class GO:0035311 biolink:NamedThing wing cell fate specification The process in which a cell in the larval wing imaginal disc becomes capable of differentiating autonomously into a wing cell, if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905010 biolink:NamedThing positive regulation of L-lysine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-lysine import into cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of L-lysine import into cell|up regulation of L-lysine import into cell|up-regulation of L-lysine import into cell|activation of L-lysine import into cell|upregulation of L-lysine import into cell sl 2016-03-02T00:16:04Z biological_process owl:Class GO:1903961 biolink:NamedThing positive regulation of anion transmembrane transport Any process that activates or increases the frequency, rate or extent of anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of anion transmembrane transport|upregulation of anion transmembrane transport|up regulation of anion transmembrane transport|activation of anion transmembrane transport pr 2015-02-25T13:52:44Z biological_process owl:Class GO:2000401 biolink:NamedThing regulation of lymphocyte migration Any process that modulates the frequency, rate or extent of lymphocyte migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T10:45:19Z biological_process owl:Class GO:0045543 biolink:NamedThing gibberellin 2-beta-dioxygenase activity Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 2-beta-hydroxygibberellin + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl gibberellin 2-beta-hydroxylase activity|gibberellin 2beta-hydroxylase activity|gibberellin 2beta-dioxygenase activity|gibberellin 2-oxidase activity|(gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating) MetaCyc:PWY-102|RHEA:15005|EC:1.14.11.13 molecular_function owl:Class GO:1901484 biolink:NamedThing negative regulation of transcription factor catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of transcription factor catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of sequence-specific DNA binding transcription factor catabolic process|down regulation of transcription factor degradation|downregulation of proteasome-mediated transcription factor catabolism|downregulation of transcription factor catabolic process|negative regulation of proteasome-mediated transcription factor catabolism|down regulation of sequence-specific DNA binding transcription factor catabolic process|down-regulation of transcription factor degradation|down regulation of proteasome-mediated transcription factor catabolism|inhibition of transcription factor catabolism|downregulation of transcription factor degradation|downregulation of transcription factor catabolism|down regulation of transcription factor catabolism|down-regulation of transcription factor catabolic process|inhibition of proteasome-mediated transcription factor catabolism|down-regulation of proteasome-mediated transcription factor catabolism|negative regulation of sequence-specific DNA binding transcription factor catabolic process|inhibition of transcription factor breakdown|down regulation of transcription factor breakdown|inhibition of sequence-specific DNA binding transcription factor catabolic process|negative regulation of transcription factor breakdown|down-regulation of transcription factor breakdown|negative regulation of transcription factor catabolism|inhibition of transcription factor catabolic process|negative regulation of transcription factor degradation|downregulation of transcription factor breakdown|downregulation of sequence-specific DNA binding transcription factor catabolic process|inhibition of transcription factor degradation|down-regulation of transcription factor catabolism|down regulation of transcription factor catabolic process bf 2012-10-08T09:03:22Z biological_process owl:Class GO:0030081 biolink:NamedThing B800-820 antenna complex Protein-pigment complex that absorbs light at 800 and 820 nm; is peripherally associated to the bacterial reaction center; transfers excitation energy to the B875 antenna complex. tmpzr1t_l9r_go_relaxed.owl light harvesting complex III|LH3 complex cellular_component owl:Class GO:0034843 biolink:NamedThing 2-oxoglutaryl-CoA thioesterase activity Catalysis of the reaction: 2-oxoglutaryl-CoA + OH- = 2-oxoglutarate + CoASH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1238 molecular_function owl:Class GO:0016790 biolink:NamedThing thiolester hydrolase activity Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A. tmpzr1t_l9r_go_relaxed.owl thiolesterase activity EC:3.1.2.- molecular_function owl:Class GO:0097082 biolink:NamedThing vascular associated smooth muscle cell fate specification The process in which a cell becomes capable of differentiating autonomously into a vascular smooth muscle cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell fate specification pr 2011-06-20T03:56:21Z biological_process owl:Class GO:0042694 biolink:NamedThing muscle cell fate specification The process in which a cell becomes capable of differentiating autonomously into a muscle cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070009 biolink:NamedThing serine-type aminopeptidase activity Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 molecular_function owl:Class GO:0070008 biolink:NamedThing serine-type exopeptidase activity Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl EC:3.4.21.- molecular_function owl:Class GO:0005942 biolink:NamedThing phosphatidylinositol 3-kinase complex A protein complex capable of phosphatidylinositol 3-kinase activity and containing subunits of any phosphatidylinositol 3-kinase (PI3K) enzyme. These complexes are divided in three classes (called I, II and III) that differ for their presence across taxonomic groups and for the type of their constituents. Catalytic subunits of phosphatidylinositol 3-kinase enzymes are present in all 3 classes; regulatory subunits of phosphatidylinositol 3-kinase enzymes are present in classes I and III; adaptor proteins have been observed in class II complexes and may be present in other classes too. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 3-kinase complex|PIK3C3-PIK3R4 complex|PI3K complex|PI3-kinase p85-subunit alpha- PI3-kinase p110 complex|PIK3CA-PIK3R1 complex|1-phosphatidylinositol 3-kinase complex For discussion of membrane association, please see https://sourceforge.net/p/geneontology/ontology-requests/11559/ cellular_component owl:Class GO:0044192 biolink:NamedThing host cell mitochondrial inner membrane The inner, i.e. lumen-facing, lipid bilayer of the host cell mitochondrial envelope. It is highly folded to form cristae. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T04:17:29Z cellular_component owl:Class GO:0044191 biolink:NamedThing host cell mitochondrial membrane Either of the lipid bilayers that surround the host cell mitochondrion and form the host cell mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T04:14:35Z cellular_component owl:Class GO:0045680 biolink:NamedThing negative regulation of R8 cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of R8 cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of R8 differentiation|negative regulation of R8 differentiation|downregulation of R8 differentiation|inhibition of R8 differentiation|down-regulation of R8 differentiation biological_process owl:Class GO:0110118 biolink:NamedThing negative regulation of compound eye photoreceptor cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of compound eye photoreceptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-16T18:15:52Z biological_process owl:Class GO:0060504 biolink:NamedThing positive regulation of epithelial cell proliferation involved in lung bud dilation Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung bud increasing in size radially. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048639 biolink:NamedThing positive regulation of developmental growth Any process that activates, maintains or increases the rate of developmental growth. tmpzr1t_l9r_go_relaxed.owl up regulation of developmental growth|upregulation of developmental growth|activation of developmental growth|stimulation of developmental growth|up-regulation of developmental growth biological_process owl:Class GO:0009398 biolink:NamedThing FMN biosynthetic process The chemical reactions and pathways resulting in the formation of FMN, the oxidized form of flavin mononucleotide (riboflavin 5'-(dihydrogen phosphate)), which acts as a coenzyme for a number of oxidative enzymes including NADH dehydrogenase. tmpzr1t_l9r_go_relaxed.owl FMN biosynthesis|FMN anabolism|FMN formation|FMN synthesis biological_process owl:Class GO:0009156 biolink:NamedThing ribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside monophosphate synthesis|ribonucleoside monophosphate biosynthesis|ribonucleoside monophosphate formation|ribonucleoside monophosphate anabolism biological_process owl:Class GO:0002127 biolink:NamedThing tRNA wobble base cytosine methylation The process in which the base of cytosine at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the C5 position. tmpzr1t_l9r_go_relaxed.owl wobble position m5C biosynthesis biological_process owl:Class GO:0002101 biolink:NamedThing tRNA wobble cytosine modification The process in which a cytosine in position 34 of a tRNA is post-transcriptionally modified. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990058 biolink:NamedThing fruit replum development The process whose specific outcome is the progression of the fruit replum over time, from its formation to the mature structure. The fruit replum is a portion of fruit placenta tissue that divides a fruit into two or more chambers and develops from a replum. tmpzr1t_l9r_go_relaxed.owl dhl 2013-03-12T21:15:15Z biological_process owl:Class GO:0002672 biolink:NamedThing positive regulation of B cell anergy Any process that activates or increases the frequency, rate, or extent of B cell anergy. tmpzr1t_l9r_go_relaxed.owl upregulation of B cell anergy|activation of B cell anergy|up-regulation of B cell anergy|stimulation of B cell anergy|positive regulation of B-cell anergy|positive regulation of B-lymphocyte anergy|up regulation of B cell anergy|positive regulation of B lymphocyte anergy biological_process owl:Class GO:0002663 biolink:NamedThing positive regulation of B cell tolerance induction Any process that activates or increases the frequency, rate, or extent of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl activation of B cell tolerance induction|stimulation of B cell tolerance induction|upregulation of B cell tolerance induction|up-regulation of B cell tolerance induction|positive regulation of B-lymphocyte tolerance induction|positive regulation of B-cell tolerance induction|up regulation of B cell tolerance induction|positive regulation of B lymphocyte tolerance induction biological_process owl:Class GO:1903560 biolink:NamedThing 3-cyano-L-alanine biosynthetic process The chemical reactions and pathways resulting in the formation of 3-cyano-L-alanine. tmpzr1t_l9r_go_relaxed.owl 3-cyano-L-alanine biosynthesis|3-cyano-L-alanine anabolism|3-cyano-L-alanine formation|3-cyano-L-alanine synthesis kmv 2014-10-21T17:13:26Z biological_process owl:Class GO:1903558 biolink:NamedThing 3-cyano-L-alanine metabolic process The chemical reactions and pathways involving 3-cyano-L-alanine. tmpzr1t_l9r_go_relaxed.owl 3-cyano-L-alanine metabolism kmv 2014-10-21T17:13:00Z biological_process owl:Class GO:0120316 biolink:NamedThing sperm flagellum assembly The assembly and organization of the sperm flagellum, the microtubule-based axoneme and associated structures that are part of a sperm flagellum (or cilium). tmpzr1t_l9r_go_relaxed.owl krc 2021-04-29T01:27:27Z biological_process owl:Class GO:0032601 biolink:NamedThing connective tissue growth factor production The appearance of connective tissue growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CTGF production|Fisp12 production|Hcs24 production|IGFBP8 production|CCN2 production|hypertrophic chondrocyte-specific gene product 24 production biological_process owl:Class GO:0005313 biolink:NamedThing L-glutamate transmembrane transporter activity Enables the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl L-glutamate transporter activity|glutamate/aspartate porter activity|glutamate/aspartate:sodium symporter activity Reactome:R-HSA-5624256|Reactome:R-HSA-428052|Reactome:R-HSA-210444 molecular_function owl:Class GO:2000607 biolink:NamedThing negative regulation of cell proliferation involved in mesonephros development Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation involved in mesonephros development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T08:42:23Z biological_process owl:Class GO:1901723 biolink:NamedThing negative regulation of cell proliferation involved in kidney development Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl down regulation of cell proliferation involved in kidney development|down-regulation of cell proliferation involved in kidney development|inhibition of cell proliferation involved in kidney development|downregulation of cell proliferation involved in kidney development krc 2012-12-27T19:30:35Z biological_process owl:Class GO:0097586 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p homodimer complex A protein dimer complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity and, in S. cerevisiae, is composed of Pmt4p. tmpzr1t_l9r_go_relaxed.owl dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p-Pmt4p dimer complex|Pmt4p-Pmt4p complex|dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p dimer pr 2014-03-02T18:19:05Z cellular_component owl:Class GO:0031502 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase complex A complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity; usually includes members of the PMT1 and PMT2 protein subfamilies. tmpzr1t_l9r_go_relaxed.owl protein O-mannosyltransferase complex|PMT family mannosyltransferase complex Note that GO:0004169 'dolichyl-phosphate-mannose-protein mannosyltransferase activity' (part of protein O-linked mannosylation) has never been observed in green plants. However, N- and C-mannosylation may occur in these species; see figure 1 in PMID:21558543. cellular_component owl:Class GO:0006591 biolink:NamedThing ornithine metabolic process The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. tmpzr1t_l9r_go_relaxed.owl ornithine metabolism biological_process owl:Class GO:0016133 biolink:NamedThing brassinosteroid catabolic process The chemical reactions and pathways resulting in the breakdown of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. tmpzr1t_l9r_go_relaxed.owl brassinosteroid catabolism|brassinosteroid degradation|brassinosteroid breakdown biological_process owl:Class GO:0016130 biolink:NamedThing phytosteroid catabolic process The chemical reactions and pathways resulting in the breakdown of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. tmpzr1t_l9r_go_relaxed.owl phytosteroid degradation|phytosteroid breakdown|phytosteroid catabolism biological_process owl:Class GO:0061586 biolink:NamedThing positive regulation of transcription by transcription factor localization Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves the localization of a transcription factor. tmpzr1t_l9r_go_relaxed.owl dph 2014-01-31T08:43:43Z biological_process owl:Class GO:1990321 biolink:NamedThing collagen type XXII trimer A collagen homotrimer of alpha1(XXII) chains; type XXII collagen triple helices acts as a cell adhesion ligand for skin epithelial cells and fibroblasts. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T16:50:05Z cellular_component owl:Class GO:0005593 biolink:NamedThing FACIT collagen trimer A collagen trimer that associates with collagen fibrils and consists of collagen monomers that contain two or more relatively short triple-helical domains connected by non-triple-helical sequences. tmpzr1t_l9r_go_relaxed.owl Wikipedia:FACIT_collagen The acronym FACIT stands for fibril-associated collagen with interrupted triple helix. cellular_component owl:Class GO:1903332 biolink:NamedThing regulation of protein folding Any process that modulates the frequency, rate or extent of protein folding. tmpzr1t_l9r_go_relaxed.owl regulation of chaperonin-mediated tubulin folding|regulation of co-chaperone activity|regulation of protein complex assembly, multichaperone pathway|regulation of co-chaperonin activity|regulation of chaperone activity|regulation of alpha-tubulin folding|regulation of beta-tubulin folding|regulation of glycoprotein-specific chaperone activity|regulation of non-chaperonin molecular chaperone ATPase activity|regulation of chaperonin ATPase activity vw 2014-08-18T13:14:34Z biological_process owl:Class GO:1902843 biolink:NamedThing positive regulation of netrin-activated signaling pathway Any process that activates or increases the frequency, rate or extent of netrin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of netrin-activated signalling pathway|up-regulation of netrin-mediated signaling pathway|activation of netrin-mediated signaling pathway|up-regulation of netrin-activated signal transduction pathway|up-regulation of netrin-activated signalling pathway|up regulation of netrin signaling pathway|up-regulation of netrin-activated signaling pathway|upregulation of netrin-mediated signaling pathway|up regulation of netrin-mediated signaling pathway|upregulation of netrin-activated signalling pathway|upregulation of netrin-activated signaling pathway|activation of netrin-activated signalling pathway|up regulation of netrin-activated signaling pathway|activation of netrin-activated signal transduction pathway|positive regulation of netrin signaling pathway|activation of netrin signaling pathway|positive regulation of netrin-mediated signaling pathway|upregulation of netrin-activated signal transduction pathway|up-regulation of netrin signaling pathway|up regulation of netrin-activated signalling pathway|up regulation of netrin-activated signal transduction pathway|upregulation of netrin signaling pathway|activation of netrin-activated signaling pathway|positive regulation of netrin-activated signal transduction pathway kmv 2014-04-01T15:25:53Z biological_process owl:Class GO:0036040 biolink:NamedThing curcumin catabolic process The chemical reactions and pathways resulting in the breakdown of the polyphenol, curcumin. tmpzr1t_l9r_go_relaxed.owl (1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione catabolic process|turmeric yellow catabolism|diferuloylmethane catabolism|diferuloylmethane breakdown|turmeric yellow catabolic process|curcumin breakdown|diferuloylmethane catabolic process|turmeric yellow breakdown|(1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione degradation|curcumin catabolism|turmeric yellow degradation|(1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione catabolism|(1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione breakdown|diferuloylmethane degradation|curcumin degradation bf 2011-11-22T02:01:05Z biological_process owl:Class GO:0098943 biolink:NamedThing neurotransmitter receptor transport, postsynaptic endosome to lysosome The directed movement of neurotransmitter receptor from the postsynaptic endosome in tranpsort vesicles to the lysosome for degradation. tmpzr1t_l9r_go_relaxed.owl postsynaptic neurotransmitter receptor endosomal trafficking biological_process owl:Class GO:0061462 biolink:NamedThing protein localization to lysosome A process in which a protein is transported to, or maintained in, a location within a lysosome. tmpzr1t_l9r_go_relaxed.owl dph 2012-10-05T10:50:51Z biological_process owl:Class GO:0003205 biolink:NamedThing cardiac chamber development The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:11:18Z biological_process owl:Class GO:0045832 biolink:NamedThing positive regulation of light-activated channel activity Any process that activates or increases the frequency, rate or extent of light-activated channel activity. tmpzr1t_l9r_go_relaxed.owl activation of light-activated channel activity|up regulation of light-activated channel activity|upregulation of light-activated channel activity|up-regulation of light-activated channel activity|stimulation of light-activated channel activity biological_process owl:Class GO:0016061 biolink:NamedThing regulation of light-activated channel activity Any process that modulates the frequency, rate or extent of light-activated channel activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050879 biolink:NamedThing multicellular organismal movement Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902073 biolink:NamedThing positive regulation of hypoxia-inducible factor-1alpha signaling pathway Any process that activates or increases the frequency, rate or extent of hypoxia-inducible factor-1alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of hypoxia-inducible factor-1alpha signalling pathway|activation of hypoxia-inducible factor-1alpha signaling pathway|up-regulation of HIF1alpha pathway|upregulation of hypoxia-inducible factor-1alpha signalling pathway|activation of HIF1alpha pathway|activation of hypoxia-inducible factor-1alpha signalling pathway|hypoxic stabilization of HIF1A|up regulation of hypoxia-inducible factor-1alpha signaling pathway|positive regulation of HIF1alpha pathway|upregulation of hypoxia-inducible factor-1alpha signaling pathway|up regulation of HIF1alpha pathway|up-regulation of hypoxia-inducible factor-1alpha signalling pathway|up-regulation of hypoxia-inducible factor-1alpha signaling pathway|upregulation of HIF1alpha pathway|positive regulation of hypoxia-inducible factor-1alpha signalling pathway bf 2013-04-18T13:28:30Z biological_process owl:Class GO:1902071 biolink:NamedThing regulation of hypoxia-inducible factor-1alpha signaling pathway Any process that modulates the frequency, rate or extent of hypoxia-inducible factor-1alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of hypoxia-inducible factor-1alpha signalling pathway|regulation of HIF1alpha pathway bf 2013-04-18T13:28:21Z biological_process owl:Class GO:0032078 biolink:NamedThing negative regulation of endodeoxyribonuclease activity Any process that stops or reduces the rate of endodeoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl down-regulation of endodeoxyribonuclease activity|downregulation of endodeoxyribonuclease activity|down regulation of endodeoxyribonuclease activity|inhibition of endodeoxyribonuclease activity|endodeoxyribonuclease inhibitor biological_process owl:Class GO:0032071 biolink:NamedThing regulation of endodeoxyribonuclease activity Any process that modulates the frequency, rate or extent of endodeoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl endodeoxyribonuclease regulator biological_process owl:Class GO:1901438 biolink:NamedThing negative regulation of toluene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of toluene metabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of methylbenzene metabolic process|negative regulation of toluene metabolism|negative regulation of methylbenzene metabolism|down regulation of toluene metabolism|down-regulation of methylbenzene metabolism|down regulation of toluene metabolic process|downregulation of toluene metabolism|down regulation of methylbenzene metabolism|inhibition of toluene metabolism|inhibition of methylbenzene metabolic process|down-regulation of toluene metabolic process|inhibition of toluene metabolic process|down regulation of methylbenzene metabolic process|downregulation of toluene metabolic process|inhibition of methylbenzene metabolism|down-regulation of toluene metabolism|downregulation of methylbenzene metabolism|down-regulation of methylbenzene metabolic process|negative regulation of methylbenzene metabolic process tt 2012-10-01T21:18:50Z biological_process owl:Class GO:0060694 biolink:NamedThing regulation of cholesterol transporter activity Any process that modulates the rate, frequency, or extent of cholesterol transporter activity. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:05:27Z biological_process owl:Class GO:0031381 biolink:NamedThing viral RNA-directed RNA polymerase complex A virus-specific protein complex that possesses RNA-dependent RNA polymerase activity and replicates the genome of an RNA virus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903976 biolink:NamedThing negative regulation of glial cell migration Any process that stops, prevents or reduces the frequency, rate or extent of glial cell migration. tmpzr1t_l9r_go_relaxed.owl downregulation of glia cell migration|inhibition of glia cell migration|down regulation of glia cell migration|down-regulation of glial cell migration|down-regulation of glia cell migration|downregulation of glial cell migration|down regulation of glial cell migration|inhibition of glial cell migration|negative regulation of glia cell migration nc 2015-03-02T15:13:38Z biological_process owl:Class GO:0030336 biolink:NamedThing negative regulation of cell migration Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration. tmpzr1t_l9r_go_relaxed.owl down regulation of cell migration|down-regulation of cell migration|downregulation of cell migration|inhibition of cell migration biological_process owl:Class GO:0052041 biolink:NamedThing negative regulation by symbiont of host programmed cell death Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression by symbiont of host PCD|suppression by symbiont of host programmed cell death|inhibition of host programmed cell death|down-regulation by symbiont of host programmed cell death|inhibition by symbiont of host programmed cell death|down regulation by symbiont of host programmed cell death|downregulation by symbiont of host programmed cell death biological_process owl:Class GO:0044003 biolink:NamedThing modulation by symbiont of host process The process in which a symbiont organism effects a change in the structure or processes of its host organism. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host system process|pathogenesis|disruption by symbiont of host cell|modification by symbiont of host morphology or physiology|regulation by symbiont of host system process|modification by symbiont of host biological process https://github.com/geneontology/go-ontology/issues/18719 GO:0044055|GO:0044004 biological_process owl:Class GO:0043482 biolink:NamedThing cellular pigment accumulation The aggregation of coloring matter in a particular location in a cell, occurring in response to some external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051716 biolink:NamedThing cellular response to stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0015104 biolink:NamedThing antimonite transmembrane transporter activity Enables the transfer of antimonite from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043614 biolink:NamedThing multi-eIF complex A multifactor complex composed of multiple translation initiation factors and the initiatior tRNAiMet, which is ready to bind to the small (40S) ribosome to form the 43S preinitiation complex. In S. cerevisiae, this complex is composed of eIF1, eIF2, eIF3, and eIF5. tmpzr1t_l9r_go_relaxed.owl multifactor translation initiation factor (eIF) complex cellular_component owl:Class GO:0015638 biolink:NamedThing microcin transmembrane transporter activity Enables the transfer of a microcin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl microcin uptake permease activity molecular_function owl:Class GO:0042910 biolink:NamedThing xenobiotic transmembrane transporter activity Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug transporter activity|multidrug transporter activity|xenobiotic transporter activity|multidrug efflux pump activity|multidrug, alkane resistant pump activity|drug transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/19460 GO:0015564|GO:0015238|GO:0015559|GO:0090484|GO:0015239 molecular_function owl:Class GO:0061111 biolink:NamedThing epithelial-mesenchymal cell signaling involved in lung development Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell and contributes to the progression of the lung over time from its initial formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl epithelial-mesenchymal cell signalling involved in lung development dph 2010-05-05T11:14:38Z biological_process owl:Class GO:0060684 biolink:NamedThing epithelial-mesenchymal cell signaling Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell where it is interpreted. tmpzr1t_l9r_go_relaxed.owl epithelial-mesenchymal cell signalling dph 2009-06-03T06:36:46Z biological_process owl:Class GO:1902299 biolink:NamedThing pre-replicative complex assembly involved in cell cycle DNA replication Any pre-replicative complex assembly that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl pre-RC assembly involved in cell cycle DNA replication|pre-replication complex assembly involved in cell cycle DNA replication jl 2013-07-10T11:47:28Z biological_process owl:Class GO:0036388 biolink:NamedThing pre-replicative complex assembly The aggregation, arrangement and bonding together of a set of components to form the pre-replicative complex, a protein-DNA complex that forms at the origin of replication during the initial step of DNA replication and allows the origin to become competent, or 'licensed', for replication. tmpzr1t_l9r_go_relaxed.owl pre-replication complex assembly|pre-RC assembly bf 2013-06-05T16:29:13Z biological_process owl:Class GO:1904839 biolink:NamedThing negative regulation of male germ-line stem cell asymmetric division Any process that stops, prevents or reduces the frequency, rate or extent of male germ-line stem cell asymmetric division. tmpzr1t_l9r_go_relaxed.owl inhibition of male germ-line stem cell asymmetric division|down-regulation of male germ-line stem cell asymmetric division|down regulation of male germ-line stem cell renewal|down-regulation of male germ-line stem cell renewal|inhibition of male germ-line stem cell renewal|down regulation of male germ-line stem cell asymmetric division|downregulation of male germ-line stem cell asymmetric division|downregulation of male germ-line stem cell renewal|negative regulation of male germ-line stem cell renewal sl 2015-12-05T00:28:39Z biological_process owl:Class GO:0045769 biolink:NamedThing negative regulation of asymmetric cell division Any process that stops, prevents, or reduces the frequency, rate or extent of asymmetric cell division. tmpzr1t_l9r_go_relaxed.owl down-regulation of asymmetric cell division|inhibition of asymmetric cell division|down regulation of asymmetric cell division|downregulation of asymmetric cell division biological_process owl:Class GO:0032045 biolink:NamedThing guanyl-nucleotide exchange factor complex A protein complex that stimulates the exchange of guanyl nucleotides associated with a GTPase. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090351 biolink:NamedThing seedling development The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge. tmpzr1t_l9r_go_relaxed.owl PO:0008037 tb 2010-06-10T03:33:10Z biological_process owl:Class GO:0044659 biolink:NamedThing viral release from host cell by cytolysis The killing by a virus of a cell by means of the rupture of cell membranes and the loss of cytoplasm. tmpzr1t_l9r_go_relaxed.owl lytic viral release|lytic viral life cycle|viral release by cell lysis|viral exit from host cell by cytolysis|viral release by host cell lysis|cytolysis by virus of host cell https://github.com/geneontology/go-ontology/issues/18852 VZ:1077 jl 2012-08-01T13:16:39Z GO:0046756|GO:0019077 biological_process owl:Class GO:0019076 biolink:NamedThing viral release from host cell The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane. tmpzr1t_l9r_go_relaxed.owl viral shedding|virus exit from host cell|viral exit|viral release|release of virus from host VZ:1076 biological_process owl:Class GO:0004790 biolink:NamedThing thioether S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + dimethyl sulfide = S-adenosyl-L-homocysteine + trimethylsulfonium. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:dimethyl-sulfide S-methyltransferase activity|thioether methyltransferase activity|S-adenosyl-L-methionine:thioether S-methyltransferase activity RHEA:19613|KEGG_REACTION:R02572|MetaCyc:THIOETHER-S-METHYLTRANSFERASE-RXN|EC:2.1.1.96 molecular_function owl:Class GO:0008172 biolink:NamedThing S-methyltransferase activity Catalysis of the transfer of a methyl group to the sulfur atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.-|Reactome:R-HSA-209821 molecular_function owl:Class GO:0031214 biolink:NamedThing biomineral tissue development Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Biomineralization biological_process owl:Class GO:0110148 biolink:NamedThing biomineralization The process where mineral crystals are formed and deposited in an organized fashion in a matrix (either cellular or extracellular) by living organisms. This gives rise to inorganic compound-based structures such as skeleton, teeth, ivory, shells, cuticle, and corals as well as bacterial biomineralization products. tmpzr1t_l9r_go_relaxed.owl mineralization|biomineral formation|biomineralisation|mineralisation Wikipedia:Biomineralization kmv 2019-06-10T17:55:28Z biological_process owl:Class GO:0102784 biolink:NamedThing lutein oxygenase activity Catalysis of the reaction: lutein + 2 O2 = 3-hydroxy-beta-ionone + 3-hydroxy-alpha-ionone + 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7884 molecular_function owl:Class GO:0033842 biolink:NamedThing N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + N-acetyl-beta-D-glucosaminyl group = UDP + N-acetyl-beta-D-galactosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl group. tmpzr1t_l9r_go_relaxed.owl beta4GalNAc-T3|beta1,4-N-acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:N-acetyl-D-glucosaminyl-group beta-1,4-N-acetylgalactosaminyltransferase activity|beta1,4-N-acetylgalactosaminyltransferase IV activity|beta4GalNAc-T4|beta1,4-N-acetylgalactosaminyltransferase III activity RHEA:20493|MetaCyc:2.4.1.244-RXN|EC:2.4.1.244 molecular_function owl:Class GO:0008376 biolink:NamedThing acetylgalactosaminyltransferase activity Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an oligosaccharide. tmpzr1t_l9r_go_relaxed.owl GalNAc transferase activity Reactome:R-HSA-9605700|Reactome:R-HSA-8931648|Reactome:R-HSA-8855954 molecular_function owl:Class GO:0035434 biolink:NamedThing copper ion transmembrane transport The directed movement of copper cation across a membrane. tmpzr1t_l9r_go_relaxed.owl copper cation transmembrane transport|copper ion membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T11:03:23Z GO:1901473 biological_process owl:Class GO:0052634 biolink:NamedThing C-19 gibberellin 2-beta-dioxygenase activity Catalysis of the reaction: a C-19 gibberellin + 2-oxoglutarate + O2 = a C-19 2-beta-hydroxygibberellin + succinate + CO2. C-19 gibberellin refers to a gibberellin with nineteen carbons. tmpzr1t_l9r_go_relaxed.owl C-19 gibberellin 2beta-hydroxylase activity|C-19 gibberellin 2-oxidase activity|(C-19 gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating)|C-19 gibberellin 2beta-dioxygenase activity|C-19 gibberellin 2-beta-hydroxylase activity|C(19) gibberellin 2-oxidase activity|C-19 GA 2-oxidase activity EC:1.14.11.13 molecular_function owl:Class GO:0045345 biolink:NamedThing positive regulation of MHC class I biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class I. tmpzr1t_l9r_go_relaxed.owl positive regulation of MHC class I synthesis|positive regulation of MHC class I biosynthesis|positive regulation of MHC class I anabolism|positive regulation of major histocompatibility complex class I biosynthetic process|up-regulation of MHC class I biosynthetic process|activation of MHC class I biosynthetic process|stimulation of MHC class I biosynthetic process|up regulation of MHC class I biosynthetic process|positive regulation of MHC class I formation|upregulation of MHC class I biosynthetic process|positive regulation of major histocompatibility complex class I biosynthesis biological_process owl:Class GO:0010847 biolink:NamedThing regulation of chromatin assembly Any process the modulates the frequency, rate or extent of chromatin assembly. Chromatin assembly is the assembly of DNA, histone proteins, and other associated proteins into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007056 biolink:NamedThing spindle assembly involved in female meiosis The aggregation, arrangement and bonding together of a set of components to form the spindle during a meiotic cell cycle in females. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl female meiotic spindle assembly biological_process owl:Class GO:0071630 biolink:NamedThing nuclear protein quality control by the ubiquitin-proteasome system The chemical reactions and pathways resulting in the breakdown of misfolded proteins via a mechanism in which the proteins are transported to the nucleus for ubiquitination, and then targeted to proteasomes for degradation. tmpzr1t_l9r_go_relaxed.owl nucleus-associated proteasomal ubiquitin-dependent protein degradation|ubiquitin-dependent catabolism of misfolded proteins by nucleus-associated proteasome|nucleus-associated proteasomal ubiquitin-dependent protein breakdown|nucleus-associated proteasomal ubiquitin-dependent protein catabolism See also the biological process terms 'unfolded protein response ; GO:0030968' and 'retrograde protein transport, ER to cytosol ; GO:0030970'. mah 2010-02-11T03:31:46Z biological_process owl:Class GO:0006515 biolink:NamedThing protein quality control for misfolded or incompletely synthesized proteins The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins. tmpzr1t_l9r_go_relaxed.owl protein quality control by the ubiquitin-proteasome system|misfolded or incompletely synthesized protein catabolism|misfolded or incompletely synthesized protein breakdown|degradation of misfolded or incompletely synthesized proteins|misfolded or incompletely synthesized protein degradation|misfolded or incompletely synthesized protein catabolic process|protein quality control (PQC) biological_process owl:Class GO:0032351 biolink:NamedThing negative regulation of hormone metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving any hormone. tmpzr1t_l9r_go_relaxed.owl negative regulation of hormone metabolism|downregulation of hormone metabolic process|down-regulation of hormone metabolic process|inhibition of hormone metabolic process|down regulation of hormone metabolic process biological_process owl:Class GO:1902206 biolink:NamedThing negative regulation of interleukin-2-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-2-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of interleukin-2-mediated signalling pathway|inhibition of IL-2-mediated signaling pathway|downregulation of interleukin-2-mediated signalling pathway|inhibition of interleukin-2-mediated signaling pathway|down-regulation of interleukin-2-mediated signaling pathway|down-regulation of interleukin-2-mediated signalling pathway|down regulation of interleukin-2-mediated signaling pathway|downregulation of interleukin-2-mediated signaling pathway|down regulation of IL-2-mediated signaling pathway|negative regulation of interleukin-2-mediated signalling pathway|downregulation of IL-2-mediated signaling pathway|down-regulation of IL-2-mediated signaling pathway|negative regulation of IL-2-mediated signaling pathway|down regulation of interleukin-2-mediated signalling pathway lb 2013-06-11T07:34:45Z biological_process owl:Class GO:1902205 biolink:NamedThing regulation of interleukin-2-mediated signaling pathway Any process that modulates the frequency, rate or extent of interleukin-2-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-2-mediated signalling pathway|regulation of IL-2-mediated signaling pathway lb 2013-06-11T07:34:39Z biological_process owl:Class GO:0036274 biolink:NamedThing response to lapatinib Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lapatinib stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T02:02:26Z biological_process owl:Class GO:0044833 biolink:NamedThing modulation by virus of host protein transport Any viral process that modulates the frequency, rate or extent of protein transport in its host organism. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-06T13:25:52Z biological_process owl:Class GO:0052038 biolink:NamedThing modulation by symbiont of host intracellular transport Any process in which an organism modulates the frequency, rate or extent of the directed movement of substances within the cell or cells of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of host intracellular trafficking biological_process owl:Class GO:0090215 biolink:NamedThing regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity Any process that modulates the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-12T10:00:45Z biological_process owl:Class GO:0043550 biolink:NamedThing regulation of lipid kinase activity Any process that modulates the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140013 biolink:NamedThing meiotic nuclear division One of the two nuclear divisions that occur as part of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiosis https://github.com/geneontology/go-ontology/issues/19910 pg 2017-03-23T09:40:00Z biological_process owl:Class GO:0000280 biolink:NamedThing nuclear division The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. tmpzr1t_l9r_go_relaxed.owl karyokinesis biological_process owl:Class GO:0051682 biolink:NamedThing galactomannan catabolic process The chemical reactions and pathways resulting in the breakdown of galactomannan, a polysaccharide composed of D-galactosyl and D-mannosyl. The mannosyl units form the backbone structure (a linear main chain) with the D-galactosyl as single side units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051069 biolink:NamedThing galactomannan metabolic process The chemical reactions and pathways involving galactomannan, a polysaccharide composed of D-galactose and D-mannose. The mannose units form the backbone structure (a linear main chain) with the D-galactose as single side units. tmpzr1t_l9r_go_relaxed.owl galactomannan metabolism biological_process owl:Class GO:1903254 biolink:NamedThing hercynylselenocysteine metabolic process The chemical reactions and pathways involving hercynylselenocysteine. tmpzr1t_l9r_go_relaxed.owl hercynylselenocysteine metabolism mah 2014-08-06T09:14:08Z biological_process owl:Class GO:0052701 biolink:NamedThing cellular modified histidine metabolic process The chemical reactions and pathways involving compounds derived from histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl modified histidine metabolic process|cellular histidine derivative metabolism|cellular histidine derivative metabolic process|modified histidine metabolism|cellular modified histidine metabolism|histidine derivative metabolic process 2011-08-01T03:47:00Z biological_process owl:Class GO:0032333 biolink:NamedThing activin secretion The regulated release of activin, a nonsteroidal regulator composed of two covalently linked beta subunits, which is synthesized in the pituitary gland and gonads and stimulates the secretion of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046879 biolink:NamedThing hormone secretion The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000984 biolink:NamedThing negative regulation of ATP citrate synthase activity Any process that stops, prevents or reduces the frequency, rate or extent of ATP citrate synthase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of citric cleavage enzyme activity|negative regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]|negative regulation of citrate-ATP lyase activity|negative regulation of ATP-citrate (pro-S-)-lyase activity|negative regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)|negative regulation of ATP-citrate (pro-S)-lyase activity|negative regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity|negative regulation of citrate cleavage enzyme activity|negative regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)|negative regulation of ATP citrate (pro-S)-lyase activity|negative regulation of adenosine triphosphate citrate lyase activity|negative regulation of ATP-citric lyase activity|negative regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity vk 2011-08-04T03:15:28Z biological_process owl:Class GO:2000983 biolink:NamedThing regulation of ATP citrate synthase activity Any process that modulates the frequency, rate or extent of ATP citrate synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP-citrate (pro-S-)-lyase activity|regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)|regulation of ATP-citrate (pro-S)-lyase activity|regulation of ATP citrate (pro-S)-lyase activity|regulation of citric cleavage enzyme activity|regulation of ATP-citric lyase activity|regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity|regulation of citrate-ATP lyase activity|regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]|regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)|regulation of adenosine triphosphate citrate lyase activity|regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity|regulation of citrate cleavage enzyme activity vk 2011-08-04T03:15:24Z biological_process owl:Class GO:0007266 biolink:NamedThing Rho protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl Rho mediated signal transduction biological_process owl:Class GO:0007265 biolink:NamedThing Ras protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl Ras mediated signal transduction biological_process owl:Class GO:0036430 biolink:NamedThing CMP kinase activity Catalysis of the reaction: ATP + CMP = ADP + CDP. tmpzr1t_l9r_go_relaxed.owl RHEA:11600|KEGG_REACTION:R00512|MetaCyc:RXN-11832 bf 2013-09-16T14:11:48Z molecular_function owl:Class GO:0004127 biolink:NamedThing cytidylate kinase activity Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP. tmpzr1t_l9r_go_relaxed.owl deoxycytidine monophosphokinase activity|dCMP kinase activity|pyrimidine nucleoside monophosphate kinase activity|cytidine monophosphate kinase activity|ATP:UMP-CMP phosphotransferase activity|UMP-CMP kinase activity|deoxycytidylate kinase activity|CMP kinase activity|ATP:CMP phosphotransferase activity|CTP:CMP phosphotransferase activity EC:2.7.4.14|MetaCyc:CMPKI-RXN molecular_function owl:Class GO:0071388 biolink:NamedThing cellular response to cortisone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisone stimulus. Cortisone is a natural glucocorticoid steroid hormone that is metabolically convertible to cortisol. Cortisone is synthesized from cholesterol in the cortex of the adrenal gland under the stimulation of adrenocorticotropin hormone (ACTH). The main physiological effect of cortisone is on carbohydrate metabolism; it can stimulate increased glucose release from the liver, increased liver glycogen synthesis, and decreased utilization of glucose by the tissues. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:57:59Z biological_process owl:Class GO:0071385 biolink:NamedThing cellular response to glucocorticoid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:53:56Z biological_process owl:Class GO:0018496 biolink:NamedThing 2,6-dihydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity Catalysis of the reaction: 2,6-dihydroxycyclohexane-1-carboxyl-CoA = 2 H+ + 2 e- + 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0205 molecular_function owl:Class GO:0018755 biolink:NamedThing 2-chloro-4-hydroxy-6-amino-1,3,5-triazine aminohydrolase activity Catalysis of the reaction: 2-chloro-4-hydroxy-6-amino-1,3,5-triazine + OH- = 2,4-dihydroxy-6-amino-1,3,5-triazine + Cl-. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902417 biolink:NamedThing (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity Enables the transfer of (+)-abscisic acid D-glucopyranosyl ester from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl ABA-GE transmembrane transporter activity|abscisic acid glucosyl ester transmembrane transporter activity tb 2013-09-16T22:37:11Z molecular_function owl:Class GO:0042947 biolink:NamedThing glucoside transmembrane transporter activity Enables the transfer of glucosides from one side of a membrane to the other. Glucosides are glycosides in which the sugar group is a glucose residue. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045994 biolink:NamedThing positive regulation of translational initiation by iron Any process involving iron that activates or increases the rate of translational initiation. tmpzr1t_l9r_go_relaxed.owl up regulation of translational initiation by iron|stimulation of translational initiation by iron|upregulation of translational initiation by iron|activation of translational initiation by iron|up-regulation of translational initiation by iron biological_process owl:Class GO:0032876 biolink:NamedThing negative regulation of DNA endoreduplication Any process that stops, prevents, or reduces the frequency, rate or extent of DNA endoreduplication. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA endoreduplication|downregulation of DNA endoreduplication|down-regulation of DNA endoreduplication|negative regulation of DNA endoreplication|negative regulation of DNA re-duplication|down regulation of DNA endoreduplication biological_process owl:Class GO:0032875 biolink:NamedThing regulation of DNA endoreduplication Any process that modulates the frequency, rate or extent of DNA endoreduplication. tmpzr1t_l9r_go_relaxed.owl regulation of DNA endoreplication|regulation of DNA re-duplication biological_process owl:Class GO:0061106 biolink:NamedThing negative regulation of stomach neuroendocrine cell differentiation Any process that decreases the rate, frequency or extent of the differentiation of a neuroendocrine cell in the stomach. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-29T12:23:05Z biological_process owl:Class GO:0036112 biolink:NamedThing medium-chain fatty-acyl-CoA metabolic process The chemical reactions and pathways involving medium-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. A medium-chain fatty acid is a fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium-chain fatty acyl-CoA metabolism|medium-chain fatty acyl CoA metabolic process bf 2012-02-15T11:12:19Z biological_process owl:Class GO:0035337 biolink:NamedThing fatty-acyl-CoA metabolic process The chemical reactions and pathways involving a fatty-acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group. tmpzr1t_l9r_go_relaxed.owl fatty acyl CoA metabolic process|fatty-acyl-CoA metabolism bf 2010-03-02T11:05:48Z biological_process owl:Class GO:0005663 biolink:NamedThing DNA replication factor C complex A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides. tmpzr1t_l9r_go_relaxed.owl activator 1 complex|RFC complex cellular_component owl:Class GO:1903457 biolink:NamedThing lactate catabolic process The chemical reactions and pathways resulting in the breakdown of lactate. tmpzr1t_l9r_go_relaxed.owl lactate degradation|lactate breakdown|lactate catabolism pr 2014-09-23T08:41:03Z biological_process owl:Class GO:0002798 biolink:NamedThing negative regulation of antibacterial peptide secretion Any process that stops, prevents, or reduces the frequency, rate, or extent of antibacterial peptide secretion. tmpzr1t_l9r_go_relaxed.owl downregulation of antibacterial peptide secretion|down-regulation of antibacterial peptide secretion|down regulation of antibacterial peptide secretion|inhibition of antibacterial peptide secretion biological_process owl:Class GO:0002797 biolink:NamedThing regulation of antibacterial peptide secretion Any process that modulates the frequency, rate, or extent of antibacterial peptide secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902614 biolink:NamedThing positive regulation of anti-Mullerian hormone signaling pathway Any process that activates or increases the frequency, rate or extent of anti-Mullerian hormone signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of anti-Mullerian hormone signaling pathway|up regulation of anti-Mullerian hormone signaling pathway|activation of anti-Mullerian hormone signaling pathway|upregulation of anti-Mullerian hormone signaling pathway hjd 2014-01-09T15:39:48Z biological_process owl:Class GO:1902612 biolink:NamedThing regulation of anti-Mullerian hormone signaling pathway Any process that modulates the frequency, rate or extent of anti-Mullerian hormone signaling pathway. tmpzr1t_l9r_go_relaxed.owl hjd 2014-01-09T15:39:30Z biological_process owl:Class GO:0072200 biolink:NamedThing negative regulation of mesenchymal cell proliferation involved in ureter development Any process that decreases the frequency, rate or extent of mesenchymal cell proliferation that contributes to the progression of the ureter gland over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl negative regulation of ureteral mesenchymal cell proliferation|negative regulation of ureter mesenchymal cell proliferation mah 2010-03-01T03:42:31Z biological_process owl:Class GO:1901613 biolink:NamedThing negative regulation of terminal button organization Any process that stops, prevents or reduces the frequency, rate or extent of terminal button organization. tmpzr1t_l9r_go_relaxed.owl down regulation of bouton organization|negative regulation of bouton organization|negative regulation of presynaptic bouton organization|down-regulation of presynaptic bouton organization|down regulation of presynaptic bouton organization|negative regulation of terminal button organisation|negative regulation of synaptic bouton organization|inhibition of presynaptic bouton organization|down-regulation of terminal bouton organization|downregulation of presynaptic bouton organization|inhibition of synaptic bouton organization|down-regulation of synaptic bouton organization|inhibition of terminal bouton organization|down regulation of synaptic bouton organization|inhibition of bouton organization|downregulation of synaptic bouton organization|downregulation of terminal button organization|inhibition of terminal button organization|downregulation of bouton organization|down regulation of terminal bouton organization|down-regulation of terminal button organisation|negative regulation of terminal bouton organization|downregulation of terminal button organisation|down regulation of terminal button organization|downregulation of terminal bouton organization|down-regulation of bouton organization|down-regulation of terminal button organization|down regulation of terminal button organisation|inhibition of terminal button organisation lb 2012-11-13T10:40:51Z biological_process owl:Class GO:2000054 biolink:NamedThing negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification Any process that stops, prevents, or reduces the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification|negative regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification jl 2010-08-20T01:13:35Z biological_process owl:Class GO:1904516 biolink:NamedThing myofibroblast cell apoptotic process Any apoptotic process in a myofibroblast cell. tmpzr1t_l9r_go_relaxed.owl MFB apoptosis|myofibroblast cell apoptosis|MFB apoptotic process sl 2015-07-28T18:29:08Z biological_process owl:Class GO:0052103 biolink:NamedThing induction by symbiont of host induced systemic resistance Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of induced systemic resistance in the host organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host induced systemic resistance|upregulation by symbiont of induced systemic resistance in host|up regulation by symbiont of induced systemic resistance in host|activation by organism of ISR in host|induction by symbiont of induced systemic resistance in host|induction by organism of ISR in host|up-regulation by symbiont of induced systemic resistance in host|activation by organism of induced systemic resistance in host|stimulation by symbiont of induced systemic resistance in host|activation by symbiont of induced systemic resistance in host|positive regulation by symbiont of induced systemic resistance in host|positive regulation by organism of induced systemic resistance in other organism involved in symbiotic interaction|induction by organism of induced systemic resistance in other organism involved in symbiotic interaction GO:0052532|GO:0052288|GO:0052533 biological_process owl:Class GO:0052159 biolink:NamedThing modulation by symbiont of host induced systemic resistance Any process in which a symbiont modulates the frequency, rate or extent of induced systemic resistance in the host organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of induced systemic resistance in other organism involved in symbiotic interaction|modulation by symbiont of induced systemic resistance in host GO:0052298 biological_process owl:Class GO:1902683 biolink:NamedThing regulation of receptor localization to synapse Any process that modulates the frequency, rate or extent of receptor localization to synapse. tmpzr1t_l9r_go_relaxed.owl regulation of receptor localisation to synapse kmv 2014-02-07T17:38:31Z biological_process owl:Class GO:0034219 biolink:NamedThing carbohydrate transmembrane transport The process in which a carbohydrate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane carbohydrate transport|carbohydrate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:1905366 biolink:NamedThing negative regulation of intralumenal vesicle formation Any process that stops, prevents or reduces the frequency, rate or extent of intralumenal vesicle formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of endosome membrane budding|downregulation of endosome membrane budding|downregulation of intralumenal vesicle formation|negative regulation of endosome membrane budding|inhibition of intralumenal vesicle formation|down-regulation of intralumenal vesicle formation|inhibition of endosome membrane budding|down regulation of endosome membrane budding|down regulation of intralumenal vesicle formation bc 2016-08-16T12:00:09Z biological_process owl:Class GO:1904979 biolink:NamedThing negative regulation of endosome organization Any process that stops, prevents or reduces the frequency, rate or extent of endosome organization. tmpzr1t_l9r_go_relaxed.owl inhibition of endosome organisation|down regulation of endosome organization and biogenesis|downregulation of endosome organization and biogenesis|downregulation of endosome organization|down regulation of endosome organisation|inhibition of endosome organization and biogenesis|down-regulation of endosome organisation|negative regulation of endosome organisation|down-regulation of endosome organization and biogenesis|negative regulation of endosome organization and biogenesis|down-regulation of endosome organization|inhibition of endosome organization|down regulation of endosome organization|downregulation of endosome organisation pad 2016-02-22T19:21:08Z biological_process owl:Class GO:0051078 biolink:NamedThing meiotic nuclear membrane disassembly The cell cycle process in which the controlled breakdown of the nuclear membranes during meiotic cell division occurs. tmpzr1t_l9r_go_relaxed.owl meiotic nuclear envelope catabolism|meiotic nuclear envelope disassembly|meiotic nuclear envelope degradation|meiotic nuclear envelope breakdown biological_process owl:Class GO:1903046 biolink:NamedThing meiotic cell cycle process A process that is part of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2014-05-22T14:22:28Z biological_process owl:Class GO:0010938 biolink:NamedThing cytoplasmic microtubule depolymerization The removal of tubulin heterodimers from one or both ends of a cytoplasmic microtubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007019 biolink:NamedThing microtubule depolymerization The removal of tubulin heterodimers from one or both ends of a microtubule. tmpzr1t_l9r_go_relaxed.owl microtubule shortening|microtubule catastrophe|microtubule disassembly|microtubule depolymerization during nuclear congression biological_process owl:Class GO:0016031 biolink:NamedThing tRNA import into mitochondrion The process in which a tRNA is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl cytoplasmic tRNA, mitochondrial import|cytoplasmic tRNA transport into mitochondrion|nuclear-encoded tRNA import into mitochondrion|cytoplasmic tRNA import into mitochondrion|mitochondrial import of cytoplasmic tRNA|cytoplasmic tRNA import into mitochondria biological_process owl:Class GO:0035927 biolink:NamedThing RNA import into mitochondrion The process in which a rRNA, ribosomal ribonucleic acid, is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl cytoplasmic RNA import into mitochondrion|nuclear-encoded RNA import into mitochondrion bf 2011-07-19T09:39:37Z biological_process owl:Class GO:0016864 biolink:NamedThing intramolecular oxidoreductase activity, transposing S-S bonds Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule, one or more sulfur-sulfur bonds in the molecule are rearranged, and no oxidized product appears. tmpzr1t_l9r_go_relaxed.owl intramolecular isomerase activity, transposing S-S bonds EC:5.3.4.- molecular_function owl:Class GO:0016860 biolink:NamedThing intramolecular oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule, and no oxidized product appears. tmpzr1t_l9r_go_relaxed.owl intramolecular isomerase activity|intramolecular oxidoreductase activity, other intramolecular oxidoreductases EC:5.3.-.-|Reactome:R-HSA-109998 molecular_function owl:Class GO:0048700 biolink:NamedThing acquisition of desiccation tolerance in seed The process in which a seed acquires tolerance to severe drying, before entering into a dry, either dormant or quiescent state. tmpzr1t_l9r_go_relaxed.owl acquisition of desiccation tolerance biological_process owl:Class GO:0097439 biolink:NamedThing acquisition of desiccation tolerance The process in which tolerance to severe drying is acquired, before entering into a dry, either dormant or quiescent state. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-05T15:09:52Z biological_process owl:Class GO:0140487 biolink:NamedThing metal ion sequestering activity The selective interaction of a protein with a metal ion to prevent it from interacting with sensitive components of a biological system. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19700 pg 2020-06-29T09:23:47Z molecular_function owl:Class GO:0140313 biolink:NamedThing molecular sequestering activity The selective interaction of a protein with a specific molecule to prevent it from interacting with other partners or inhibiting its localization to other areas of the cell. tmpzr1t_l9r_go_relaxed.owl pg 2019-03-28T10:00:25Z molecular_function owl:Class GO:1901383 biolink:NamedThing negative regulation of chorionic trophoblast cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of chorionic trophoblast cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of chorionic trophoblast cell proliferation|downregulation of chorionic trophoblast cell proliferation|down-regulation of chorionic trophoblast cell proliferation|down regulation of chorionic trophoblast cell proliferation vk 2012-10-01T10:04:23Z biological_process owl:Class GO:0035438 biolink:NamedThing cyclic-di-GMP binding Binding to cyclic-di-GMP, cyclic dimeric guanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl cyclic dinucleotide di-GMP binding|c-di-GMP binding|3',5'-cyclic di-GMP binding bf 2010-04-09T02:40:17Z molecular_function owl:Class GO:0099587 biolink:NamedThing inorganic ion import across plasma membrane The directed movement of inorganic ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl inorganic ion import into cell biological_process owl:Class GO:0031754 biolink:NamedThing Edg-1 sphingosine 1-phosphate receptor binding Binding to an Edg-1 sphingosine 1-phosphate receptor. tmpzr1t_l9r_go_relaxed.owl Edg-1 sphingosine 1-phosphate receptor ligand molecular_function owl:Class GO:0031753 biolink:NamedThing endothelial differentiation G protein-coupled receptor binding Binding to an endothelial differentiation G protein-coupled receptor. tmpzr1t_l9r_go_relaxed.owl endothelial differentiation G-protein coupled receptor ligand|endothelial differentiation G-protein coupled receptor binding molecular_function owl:Class GO:0042669 biolink:NamedThing regulation of inner ear auditory receptor cell fate specification Any process that mediates the specification of a cell into an auditory hair cell. tmpzr1t_l9r_go_relaxed.owl regulation of auditory hair cell fate specification biological_process owl:Class GO:0042659 biolink:NamedThing regulation of cell fate specification Any process that mediates the adoption of a specific fate by a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901019 biolink:NamedThing regulation of calcium ion transmembrane transporter activity Any process that modulates the frequency, rate or extent of calcium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl rl 2012-06-15T07:54:12Z biological_process owl:Class GO:1903169 biolink:NamedThing regulation of calcium ion transmembrane transport Any process that modulates the frequency, rate or extent of calcium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of transmembrane calcium transport|regulation of calcium ion membrane transport human HRC regulates RYR2 and thus regulates transmembrane transport of calcium from SR to cytosol rl 2014-07-11T17:09:26Z biological_process owl:Class GO:0046246 biolink:NamedThing terpene biosynthetic process The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units. tmpzr1t_l9r_go_relaxed.owl terpene synthesis|terpene biosynthesis|terpene formation|terpene anabolism biological_process owl:Class GO:0008299 biolink:NamedThing isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. tmpzr1t_l9r_go_relaxed.owl polyterpene biosynthesis|polyterpene biosynthetic process|polyisoprenoid biosynthetic process|isoprenoid synthesis|isoprenoid biosynthesis|polyisoprenoid synthesis|isoprenoid formation|polyisoprenoid formation|polyisoprenoid biosynthesis|isoprenoid anabolism|polyisoprenoid anabolism MetaCyc:POLYISOPRENSYN-PWY GO:0009241 biological_process owl:Class GO:0045611 biolink:NamedThing negative regulation of hemocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of hemocyte differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of hemocyte differentiation|negative regulation of arthropod blood cell differentiation|down-regulation of hemocyte differentiation|inhibition of hemocyte differentiation|down regulation of hemocyte differentiation biological_process owl:Class GO:1905170 biolink:NamedThing negative regulation of protein localization to phagocytic vesicle Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation to phagocytic vesicle|inhibition of protein localisation to phagosome|down-regulation of protein localization to phagocytic vesicle|down-regulation of protein localization in phagocytic vesicle|downregulation of protein recruitment to phagosome|negative regulation of protein localisation to phagosome|down-regulation of protein localisation to phagosome|down regulation of protein localisation to phagosome|downregulation of protein localisation to phagocytic vesicle|down regulation of protein localization in phagocytic vesicle|downregulation of protein localisation in phagocytic vesicle|down regulation of protein recruitment to phagosome|inhibition of protein localisation in phagocytic vesicle|downregulation of protein localization to phagocytic vesicle|downregulation of protein localization in phagocytic vesicle|inhibition of protein localization to phagocytic vesicle|negative regulation of protein localization in phagocytic vesicle|inhibition of protein recruitment to phagosome|down regulation of protein localisation in phagocytic vesicle|down-regulation of protein recruitment to phagosome|down-regulation of protein localisation to phagocytic vesicle|down-regulation of protein localisation in phagocytic vesicle|down regulation of protein localization to phagocytic vesicle|down regulation of protein localisation to phagocytic vesicle|negative regulation of protein localisation in phagocytic vesicle|inhibition of protein localisation to phagocytic vesicle|negative regulation of protein recruitment to phagosome|downregulation of protein localisation to phagosome|inhibition of protein localization in phagocytic vesicle bf 2016-05-02T18:38:22Z biological_process owl:Class GO:0036376 biolink:NamedThing sodium ion export across plasma membrane The directed movement of sodium ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl sodium export|sodium ion export|sodium ion export from cell mah 2009-12-16T11:13:55Z GO:0071436|GO:0098667 biological_process owl:Class GO:1904991 biolink:NamedThing negative regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|inhibition of dopamine receptor, adenylyl cyclase inhibiting pathway|inhibition of adenylate cyclase-inhibiting dopamine receptor signaling pathway|down-regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|down regulation of dopamine receptor, adenylate cyclase inhibiting pathway|downregulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|down regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|down regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|inhibition of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|downregulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|downregulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|down regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|inhibition of dopamine receptor, adenylate cyclase inhibiting pathway|downregulation of dopamine receptor, adenylate cyclase inhibiting pathway|negative regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|down-regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|downregulation of dopamine receptor, adenylyl cyclase inhibiting pathway|negative regulation of dopamine receptor, adenylate cyclase inhibiting pathway|down-regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|down regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|down-regulation of dopamine receptor, adenylate cyclase inhibiting pathway|negative regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|inhibition of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway kmv 2016-02-29T22:42:25Z biological_process owl:Class GO:1904990 biolink:NamedThing regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway Any process that modulates the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|regulation of dopamine receptor, adenylate cyclase inhibiting pathway|regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway kmv 2016-02-29T22:42:16Z biological_process owl:Class GO:0010888 biolink:NamedThing negative regulation of lipid storage Any process that decreases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905953 biolink:NamedThing negative regulation of lipid localization Any process that stops, prevents or reduces the frequency, rate or extent of lipid localization. tmpzr1t_l9r_go_relaxed.owl down regulation of lipid localization|down-regulation of lipid localization|down-regulation of lipid localisation|downregulation of lipid localisation|inhibition of lipid localization|down regulation of lipid localisation|inhibition of lipid localisation|downregulation of lipid localization|negative regulation of lipid localisation rz 2017-02-21T12:12:41Z biological_process owl:Class GO:0015216 biolink:NamedThing purine nucleotide transmembrane transporter activity Enables the transfer of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2001277 biolink:NamedThing negative regulation of leucine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of leucine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of leucine synthesis|negative regulation of leucine biosynthesis|negative regulation of leucine anabolism|negative regulation of leucine formation mcc 2011-12-13T03:13:36Z biological_process owl:Class GO:2001276 biolink:NamedThing regulation of leucine biosynthetic process Any process that modulates the frequency, rate or extent of leucine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of leucine formation|regulation of leucine anabolism|regulation of leucine biosynthesis|regulation of leucine synthesis mcc 2011-12-13T03:13:27Z biological_process owl:Class GO:0000494 biolink:NamedThing box C/D RNA 3'-end processing Any process involved in forming the mature 3' end of a box C/D RNA molecule. tmpzr1t_l9r_go_relaxed.owl box C/D sRNA 3'-end processing|box C/D RNA 3' end processing|box C/D snoRNA 3'-end processing https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0034963 biolink:NamedThing box C/D RNA processing Any process involved in the conversion of a primary box C/D type small RNA transcript into a mature box C/D RNA. tmpzr1t_l9r_go_relaxed.owl box C/D sRNA processing|box C/D snoRNA processing https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0120305 biolink:NamedThing regulation of pigmentation Any process that modulates the frequency, rate or extent of the deposition or modulates the distribution of coloring matter in an organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20524 krc 2021-02-09T19:37:35Z biological_process owl:Class GO:2001162 biolink:NamedThing positive regulation of histone H3-K79 methylation Any process that activates or increases the frequency, rate or extent of histone H3-K79 methylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of histone lysine H3 K79 methylation|positive regulation of histone H3K79me|positive regulation of histone H3 K79 methylation se 2011-10-25T10:27:10Z biological_process owl:Class GO:0035388 biolink:NamedThing positive regulation of Roundabout signaling pathway Any process that activates or increases the frequency, rate or extent of the Roundabout signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of Roundabout signalling pathway bf 2010-03-18T02:41:16Z biological_process owl:Class GO:1904387 biolink:NamedThing cellular response to L-phenylalanine derivative Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-phenylalanine derivative stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T17:56:25Z biological_process owl:Class GO:1903325 biolink:NamedThing positive regulation of snoRNA metabolic process Any process that activates or increases the frequency, rate or extent of snoRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of snoRNA metabolic process|up-regulation of snoRNA metabolic process|upregulation of snoRNA metabolism|activation of snoRNA metabolism|up-regulation of snoRNA metabolism|up regulation of snoRNA metabolism|upregulation of snoRNA metabolic process|positive regulation of snoRNA metabolism|activation of snoRNA metabolic process vw 2014-08-18T13:05:33Z biological_process owl:Class GO:1900304 biolink:NamedThing negative regulation of laminaritriose transport Any process that stops, prevents or reduces the frequency, rate or extent of laminaritriose transport. tmpzr1t_l9r_go_relaxed.owl down regulation of laminaritriose transport|downregulation of laminaritriose transport|inhibition of laminaritriose transport|down-regulation of laminaritriose transport tt 2012-04-05T07:57:58Z biological_process owl:Class GO:0051051 biolink:NamedThing negative regulation of transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl inhibition of transport|downregulation of transport|down regulation of transport|down-regulation of transport biological_process owl:Class GO:0034575 biolink:NamedThing 4-isopropylaniline dehydrogenase activity Catalysis of the reaction: 4-isopropylaniline + H2O = 4'-(2-hydroxyisopropyl)phenylaniline + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0901|EC:1.17.99.- molecular_function owl:Class GO:0016725 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on CH or CH2 groups, other acceptors EC:1.17.-.- molecular_function owl:Class GO:0097350 biolink:NamedThing neutrophil clearance The selective elimination of senescent neutrophils from the body by autoregulatory mechanisms. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-27T03:53:38Z biological_process owl:Class GO:0043277 biolink:NamedThing apoptotic cell clearance The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte. tmpzr1t_l9r_go_relaxed.owl efferocytosis|apoptotic cell removal|programmed cell clearance Note that unlike mammals or Drosophila, C. elegans (and many lower organisms) do not have professional macrophages/phagocytes, instead cell corpses are engulfed by neighboring cells. Cell types that can function as engulfing cells include hypodermal cells, gonadal sheath cells, pharyngeal muscle cells, and intestinal cells. biological_process owl:Class GO:0099507 biolink:NamedThing ligand-gated ion channel activity involved in regulation of presynaptic membrane potential Any ligand-gated ion channel activity, occurring in the presynaptic membrane, that is involved in regulation of presynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ligand-gated ion channel activity involved in regulation of pre-synaptic membrane potential|ligand-dependent ion channel activity involved in regulation of presynaptic membrane potential|ligand-dependent ion channel activity involved in regulation of pre-synaptic membrane potential|ligand gated ion channel activity involved in regulation of presynaptic membrane potential molecular_function owl:Class GO:1904060 biolink:NamedThing negative regulation of locomotor rhythm Any process that stops, prevents or reduces the frequency, rate or extent of locomotor rhythm. tmpzr1t_l9r_go_relaxed.owl down regulation of circadian locomotor activity rhythm|downregulation of locomotor rhythm|inhibition of circadian locomotor activity rhythm|down-regulation of circadian locomotor activity rhythm|down-regulation of locomotor rhythm|inhibition of locomotor rhythm|down regulation of locomotor rhythm|downregulation of circadian locomotor activity rhythm|negative regulation of circadian locomotor activity rhythm sl 2015-03-18T20:38:58Z biological_process owl:Class GO:1900145 biolink:NamedThing regulation of nodal signaling pathway involved in determination of left/right asymmetry Any process that modulates the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl regulation of nodal signalling pathway involved in determination of left/right asymmetry bf 2012-03-06T11:00:32Z biological_process owl:Class GO:1900107 biolink:NamedThing regulation of nodal signaling pathway Any process that modulates the frequency, rate or extent of nodal signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of nodal signalling pathway|regulation of nodal signaling bf 2012-02-16T03:34:19Z biological_process owl:Class GO:0030373 biolink:NamedThing high molecular weight B cell growth factor receptor activity Combining with a high molecular weight B cell growth factor and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl HMW-BCGF receptor|high molecular weight B lymphocyte growth factor receptor activity|high molecular weight B-lymphocyte growth factor receptor activity|high molecular weight B-cell growth factor receptor activity molecular_function owl:Class GO:0038023 biolink:NamedThing signaling receptor activity Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. tmpzr1t_l9r_go_relaxed.owl receptor activity involved in signal transduction|signalling receptor activity|receptor activity bf 2011-08-01T02:45:27Z GO:0019041|GO:0004872 molecular_function owl:Class GO:0055043 biolink:NamedThing 5-oxovalerate dehydrogenase activity Catalysis of the reaction: 5-oxovalerate + NADP+ + H2O = glutarate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072105 biolink:NamedThing ureteric peristalsis A wavelike sequence of involuntary muscular contraction and relaxation that passes along the ureter, impelling the contents onwards. The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T03:07:54Z biological_process owl:Class GO:0014849 biolink:NamedThing ureter smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the ureter. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051872 biolink:NamedThing sphingosine catabolic process The chemical reactions and pathways resulting in the breakdown of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues. tmpzr1t_l9r_go_relaxed.owl sphing-4-enine catabolism|sphing-4-enine catabolic process|(4E)-sphing-4-enine catabolism|(4E)-sphing-4-enine catabolic process biological_process owl:Class GO:0046521 biolink:NamedThing sphingoid catabolic process The chemical reactions and pathways resulting in the breakdown of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds. tmpzr1t_l9r_go_relaxed.owl sphingoid degradation|sphingoid catabolism|sphingoid breakdown biological_process owl:Class GO:1904129 biolink:NamedThing positive regulation of convergent extension involved in somitogenesis Any process that activates or increases the frequency, rate or extent of convergent extension involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of convergent extension involved in somitogenesis|upregulation of convergent extension involved in somitogenesis|up regulation of convergent extension involved in somitogenesis|activation of convergent extension involved in somitogenesis dph 2015-04-10T21:13:15Z biological_process owl:Class GO:1900400 biolink:NamedThing regulation of iron ion import into cell by regulation of transcription from RNA polymerase II promoter A regulation of transcription from RNA polymerase II promoter that results in regulation of iron ion import. tmpzr1t_l9r_go_relaxed.owl regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter|regulation of iron ion import by regulation of transcription from RNA polymerase II promoter|regulation of iron import by regulation of transcription from RNA polymerase II promoter 2012-04-20T02:34:12Z GO:1900393 biological_process owl:Class GO:0034581 biolink:NamedThing 4-methyloct-2-enoyl-CoA hydratase activity Catalysis of the reaction: 4-methyloct-2-enoyl-CoA + H2O = 3-hydroxy-4-methyloctanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0925 molecular_function owl:Class GO:2000161 biolink:NamedThing regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in cardiac right atrium morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:05:21Z biological_process owl:Class GO:2000159 biolink:NamedThing regulation of planar cell polarity pathway involved in heart morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:03:22Z biological_process owl:Class GO:0000962 biolink:NamedThing positive regulation of mitochondrial RNA catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070179 biolink:NamedThing D-serine biosynthetic process The chemical reactions and pathways resulting in the formation of D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid. D-serine is often formed by racemization of L-serine. tmpzr1t_l9r_go_relaxed.owl D-serine synthesis|D-serine biosynthesis|D-serine anabolism|D-serine formation biological_process owl:Class GO:0046437 biolink:NamedThing D-amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of D-amino acids, the D-enantiomers of amino acids. tmpzr1t_l9r_go_relaxed.owl D-amino acid anabolism|D-amino acid biosynthesis|D-amino acid synthesis|D-amino acid formation biological_process owl:Class GO:0043300 biolink:NamedThing regulation of leukocyte degranulation Any process that modulates the frequency, rate, or extent of leukocyte degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of immune cell granule exocytosis|regulation of immune cell degranulation|regulation of leukocyte granule exocytosis|regulation of leucocyte degranulation biological_process owl:Class GO:0002697 biolink:NamedThing regulation of immune effector process Any process that modulates the frequency, rate, or extent of an immune effector process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044830 biolink:NamedThing modulation by host of viral RNA genome replication A process in which a host organism modulates the frequency, rate or extent of viral RNA genome replication. tmpzr1t_l9r_go_relaxed.owl regulation by host of viral RNA genome replication jl 2014-02-06T11:43:16Z biological_process owl:Class GO:0044827 biolink:NamedThing modulation by host of viral genome replication A process in which a host organism modulates the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl regulation by host of viral genome reproduction jl 2014-02-06T11:26:45Z biological_process owl:Class GO:0009665 biolink:NamedThing plastid inheritance The partitioning of plastids between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048308 biolink:NamedThing organelle inheritance The partitioning of organelles between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010528 biolink:NamedThing regulation of transposition Any process that modulates the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071063 biolink:NamedThing sensory perception of wind The series of events required for an organism to receive sensory mechanical stimulus resulting from air flow, convert it to a molecular signal, and recognize and characterize the signal. tmpzr1t_l9r_go_relaxed.owl sensory perception of air flow|perception of wind mah 2009-11-04T02:40:34Z biological_process owl:Class GO:0050954 biolink:NamedThing sensory perception of mechanical stimulus The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl perception of mechanical stimulus|chemi-mechanical coupling|mechanosensory perception biological_process owl:Class GO:0101013 biolink:NamedThing mechanosensitive voltage-gated sodium channel activity Enables the transmembrane transfer of a sodium ion by a voltage-gated channel whose activity is modulated in response to mechanical stress. Response to mechanical stress and voltage gating together is different than the sum of individual responses. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl mechanically-modulated voltage-gated sodium channel activity molecular_function owl:Class GO:0140135 biolink:NamedThing mechanosensitive cation channel activity Enables the transmembrane transfer of a cation by a channel that opens in response to a mechanical stress. tmpzr1t_l9r_go_relaxed.owl mechanically-gated cation channel activity https://github.com/geneontology/go-ontology/issues/14588 pg 2017-11-17T12:40:37Z molecular_function owl:Class GO:0098796 biolink:NamedThing membrane protein complex Any protein complex that is part of a membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051044 biolink:NamedThing positive regulation of membrane protein ectodomain proteolysis Any process that activates or increases the frequency, rate or extent of membrane protein ectodomain peptidolysis. tmpzr1t_l9r_go_relaxed.owl up regulation of membrane protein ectodomain proteolysis|activation of membrane protein ectodomain proteolysis|stimulation of membrane protein ectodomain proteolysis|up-regulation of membrane protein ectodomain proteolysis|upregulation of membrane protein ectodomain proteolysis biological_process owl:Class GO:0060043 biolink:NamedThing regulation of cardiac muscle cell proliferation Any process that modulates the frequency, rate or extent of cardiac muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of cardiomyocyte proliferation|regulation of heart muscle cell proliferation biological_process owl:Class GO:0055021 biolink:NamedThing regulation of cardiac muscle tissue growth Any process that modulates the frequency, rate or extent of cardiac muscle growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086102 biolink:NamedThing adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate A G protein-coupled acetylcholine receptor signaling pathway that contributes to an decrease in frequency or rate of heart contraction through inhibition of adenylate cyclase (AC) activity. Binding of acetylcholine to a G protein-coupled (muscarinic) receptor on the surface of the signal-receiving cell results in the activation of an intracellular Gi/o protein. Gi/o inhibits adenylate cyclase to decrease cyclic-AMP (cAMP) levels. Since cAMP binds directly to F-channels to allow an inward flow of sodium (funny current, If current), a reduction in cAMP reduces the funny current to bring about membrane hyperpolarization and a decrease in heart rate. tmpzr1t_l9r_go_relaxed.owl muscarinic receptor signalling pathway involved in negative regulation of heart rate by inhibition of If channel|AC-inhibiting muscarinic receptor signaling pathway involved in negative regulation of heart rate|muscarinic receptor signalling pathway involved in negative regulation of heart rate by inhibition of funny current|adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate|Gi-coupled G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate|G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate via inhibition of adenylate cyclase activity bf biological_process owl:Class GO:0086033 biolink:NamedThing G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate A G protein-coupled acetylcholine receptor signaling pathway that contributes to a decrease in frequency or rate of heart contraction. Binding of acetylcholine to a G protein-coupled (muscarinic) receptor on the surface of the signal-receiving cell results in the alpha subunit of a coupled G-protein binding to GTP. This results in the separation of the beta-gamma complex from the alpha subunit. Both the alpha subunit, and the beta-gamma complex can continue to signal to bring about membrane hyperpolarization and a reduction in heart rate. tmpzr1t_l9r_go_relaxed.owl G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate|muscarinic receptor signalling pathway involved in negative regulation of heart rate|M2 receptor signalling pathway involved in negative regulation of heart rate|muscarinic acetylcholine receptor signaling pathway involved in negative regulation of heart rate tb 2011-11-11T03:11:58Z biological_process owl:Class GO:0030427 biolink:NamedThing site of polarized growth Any part of a cell where non-isotropic growth takes place. tmpzr1t_l9r_go_relaxed.owl GO:0030483|GO:0000134 cellular_component owl:Class GO:0000489 biolink:NamedThing maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048833 biolink:NamedThing specification of floral organ number Any process that modulates the number of floral organs formed in a floral whorl. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048832 biolink:NamedThing specification of plant organ number The regionalization process that modulates the quantity of a particular type of plant organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030840 biolink:NamedThing negative regulation of intermediate filament polymerization Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate filament polymerization. tmpzr1t_l9r_go_relaxed.owl down regulation of intermediate filament polymerization|negative regulation of intermediate filament polymerization and/or depolymerization|downregulation of intermediate filament polymerization|down-regulation of intermediate filament polymerization|inhibition of intermediate filament polymerization Note that this term was split from 'negative regulation of intermediate filament polymerization and/or depolymerization ; GO:0045825' (sibling term 'negative regulation of intermediate filament depolymerization ; GO:0030843'). biological_process owl:Class GO:0046336 biolink:NamedThing ethanolamine catabolic process The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). tmpzr1t_l9r_go_relaxed.owl ethanolamine catabolism|ethanolamine degradation|ethanolamine breakdown biological_process owl:Class GO:1901161 biolink:NamedThing primary amino compound catabolic process The chemical reactions and pathways resulting in the breakdown of primary amino compound. tmpzr1t_l9r_go_relaxed.owl primary amino compound degradation|primary amino compound catabolism|primary amino compound breakdown bf 2012-07-18T04:45:06Z biological_process owl:Class GO:2001250 biolink:NamedThing positive regulation of ammonia assimilation cycle Any process that activates or increases the frequency, rate or extent of ammonia assimilation cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of glutamate metabolic process via glutamine and ammonia|positive regulation of glutamate metabolism via glutamine and ammonia rl 2011-12-01T10:08:34Z biological_process owl:Class GO:0045848 biolink:NamedThing positive regulation of nitrogen utilization Any process that activates or increases the frequency, rate or extent of nitrogen utilization. tmpzr1t_l9r_go_relaxed.owl up regulation of nitrogen utilization|upregulation of nitrogen utilization|stimulation of nitrogen utilization|up-regulation of nitrogen utilization|activation of nitrogen utilization biological_process owl:Class GO:0046039 biolink:NamedThing GTP metabolic process The chemical reactions and pathways involving GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl GTP metabolism biological_process owl:Class GO:0009205 biolink:NamedThing purine ribonucleoside triphosphate metabolic process The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside triphosphate metabolism biological_process owl:Class GO:0090330 biolink:NamedThing regulation of platelet aggregation Any process that modulates the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:46:08Z biological_process owl:Class GO:2001062 biolink:NamedThing xylan binding Binding to xylan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T10:10:04Z molecular_function owl:Class GO:0030247 biolink:NamedThing polysaccharide binding Binding to a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl polysaccharide assembly with MHC class II protein complex GO:0002506 molecular_function owl:Class GO:1902934 biolink:NamedThing isopentenol biosynthetic process The chemical reactions and pathways resulting in the formation of isopentenol. tmpzr1t_l9r_go_relaxed.owl isopentenol anabolism|isopentenol biosynthesis|isopentenol synthesis|isopentenol formation tt 2014-04-24T16:51:42Z biological_process owl:Class GO:0010946 biolink:NamedThing regulation of meiotic joint molecule formation Any process that modulates the frequency, rate or extent of meiotic joint molecule formation. Meiotic joint molecule formation is the conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T09:46:23Z biological_process owl:Class GO:1904592 biolink:NamedThing positive regulation of protein refolding Any process that activates or increases the frequency, rate or extent of protein refolding. tmpzr1t_l9r_go_relaxed.owl up regulation of heat shock protein activity|upregulation of protein refolding|up-regulation of protein refolding|up-regulation of heat shock protein activity|activation of heat shock protein activity|positive regulation of heat shock protein activity|up regulation of protein refolding|activation of protein refolding|upregulation of heat shock protein activity sl 2015-08-21T18:11:16Z biological_process owl:Class GO:0061083 biolink:NamedThing regulation of protein refolding Any process that regulates the rate, frequency, or extent of protein refolding. Protein refolding is the process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:07:54Z biological_process owl:Class GO:0070856 biolink:NamedThing myosin VI light chain binding Binding to a light chain of a myosin VI complex. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-13T01:46:13Z molecular_function owl:Class GO:0032027 biolink:NamedThing myosin light chain binding Binding to a light chain of a myosin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051590 biolink:NamedThing positive regulation of neurotransmitter transport Any process that activates or increases the frequency, rate or extent of the directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl activation of neurotransmitter transport|stimulation of neurotransmitter transport|up-regulation of neurotransmitter transport|upregulation of neurotransmitter transport|up regulation of neurotransmitter transport biological_process owl:Class GO:0051050 biolink:NamedThing positive regulation of transport Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of transport|up regulation of transport|activation of transport|up-regulation of transport|upregulation of transport biological_process owl:Class GO:0042216 biolink:NamedThing phenanthrene catabolic process The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl phenanthrene degradation|phenanthrene breakdown|phenanthrene catabolism UM-BBD_pathwayID:phe biological_process owl:Class GO:0005885 biolink:NamedThing Arp2/3 protein complex A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097058 biolink:NamedThing CRLF-CLCF1 complex A heterodimeric protein complex that is composed of cardiotrophin-like cytokine factor 1 (product of the CLCF1 gene) and cytokine receptor-like factor 1 (product of the CRLF gene) and is secreted into the extracellular space. The CRLF-CLCF1 complex is a ligand for the ciliary neurotrophic factor (CNTF) receptor complex. tmpzr1t_l9r_go_relaxed.owl CLF-CLC complex pr 2011-05-26T10:37:55Z cellular_component owl:Class GO:0019574 biolink:NamedThing sucrose catabolic process via 3'-ketosucrose The chemical reactions and pathways resulting in the breakdown of sucrose, which proceeds via the conversion of sucrose to 3'-ketosucrose. 3'-ketosucrose is hydrolyzed to 3-ketoglucose and fructose, and the 3-ketoglucose is then be converted to glucose. tmpzr1t_l9r_go_relaxed.owl sucrose catabolism, using glucoside 3-dehydrogenase|sucrose catabolic process to D-glucose|sucrose breakdown, using glucoside 3-dehydrogenase|sucrose catabolic process, using glucoside 3-dehydrogenase|sucrose degradation, using glucoside 3-dehydrogenase MetaCyc:SUCROSEUTIL2-PWY biological_process owl:Class GO:0033263 biolink:NamedThing CORVET complex A multimeric protein complex that acts as an endosomal tethering complex (CORVET = class C core vacuole/endosome tethering) by cooperating with Rab GTPases to capture endosomal vesicles and trap them prior to the action of SNAREs; the complex is involved in endo-lysosomal biogenesis and required for transport between endosome and vacuole. The Saccharomyces cerevisiae complex contains Vps8p, Vps3p, Pep5p, Vps16p, Pep3p, and Vps33p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099023 biolink:NamedThing vesicle tethering complex Any protein complex that plays a role in vesicle tethering. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034773 biolink:NamedThing histone H4-K20 trimethylation The modification of histone H4 by addition of three methyl groups to lysine at position 20 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H4 K20 trimethylation|histone H4 K20 trimethylation biological_process owl:Class GO:0018023 biolink:NamedThing peptidyl-lysine trimethylation The methylation of peptidyl-lysine to form peptidyl-N6,N6,N6-trimethyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0074 biological_process owl:Class GO:0090180 biolink:NamedThing positive regulation of thiamine biosynthetic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine. tmpzr1t_l9r_go_relaxed.owl positive regulation of thiamin biosynthetic process tb 2009-12-18T10:30:07Z biological_process owl:Class GO:0002033 biolink:NamedThing angiotensin-mediated vasodilation involved in regulation of systemic arterial blood pressure The process that increases the diameter of a blood vessel via the renin-angiotensin system. tmpzr1t_l9r_go_relaxed.owl vasodilation by angiotensin involved in regulation of systemic arterial blood pressure biological_process owl:Class GO:0042311 biolink:NamedThing vasodilation An increase in the internal diameter of blood vessels, especially arterioles or capillaries, due to relaxation of smooth muscle cells that line the vessels, and usually resulting in a decrease in blood pressure. tmpzr1t_l9r_go_relaxed.owl positive regulation of blood vessel size|vasodilatation https://github.com/geneontology/go-ontology/issues/12253 Wikipedia:Vasodilation GO:0045909 biological_process owl:Class GO:0110073 biolink:NamedThing regulation of apical constriction involved in ventral furrow formation Any process that modulates the frequency, rate or extent of apical constriction involved in ventral furrow formation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-12-06T17:30:29Z biological_process owl:Class GO:1903115 biolink:NamedThing regulation of actin filament-based movement Any process that modulates the frequency, rate or extent of actin filament-based movement. tmpzr1t_l9r_go_relaxed.owl al 2014-06-12T16:55:57Z biological_process owl:Class GO:2000405 biolink:NamedThing negative regulation of T cell migration Any process that stops, prevents or reduces the frequency, rate or extent of T cell migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-lymphocyte migration|negative regulation of T-cell migration|negative regulation of T lymphocyte migration mah 2011-02-23T10:48:52Z biological_process owl:Class GO:2000774 biolink:NamedThing positive regulation of cellular senescence Any process that activates or increases the frequency, rate or extent of cellular senescence. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-22T01:57:12Z biological_process owl:Class GO:0048243 biolink:NamedThing norepinephrine secretion The regulated release of norepinephrine by a cell. Norepinephrine is a catecholamine and it acts as a hormone and as a neurotransmitter of most of the sympathetic nervous system. tmpzr1t_l9r_go_relaxed.owl noradrenaline secretion biological_process owl:Class GO:0015874 biolink:NamedThing norepinephrine transport The directed movement of norepinephrine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl levarterenol transport|noradrenaline transport biological_process owl:Class GO:0036101 biolink:NamedThing leukotriene B4 catabolic process The chemical reactions and pathways resulting in the breakdown of leukotriene B4, a leukotriene composed of (6Z,8E,10E,14Z)-eicosatetraenoic acid having (5S)- and (12R)-hydroxy substituents. tmpzr1t_l9r_go_relaxed.owl leukotriene B4 degradation|leukotriene B4 catabolism|leukotriene B4 breakdown|LTB4 catabolism bf 2012-01-27T01:26:24Z biological_process owl:Class GO:0036102 biolink:NamedThing leukotriene B4 metabolic process The chemical reactions and pathways involving leukotriene B4, a leukotriene composed of (6Z,8E,10E,14Z)-eicosatetraenoic acid having (5S)- and (12R)-hydroxy substituents. tmpzr1t_l9r_go_relaxed.owl LTB4 metabolism bf 2012-01-27T01:39:43Z biological_process owl:Class GO:2000216 biolink:NamedThing positive regulation of proline metabolic process Any process that activates or increases the frequency, rate or extent of proline metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of proline metabolism mah 2010-11-03T02:45:27Z biological_process owl:Class GO:0031963 biolink:NamedThing cortisol receptor activity Combining with cortisol and transmitting the signal within the cell to trigger a change in cell activity or function. tmpzr1t_l9r_go_relaxed.owl For cortisol receptors that act in the nucleus to regulate transcription, consider also annotating to the terms: ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038049' or ligand-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038049'. molecular_function owl:Class GO:0004883 biolink:NamedThing glucocorticoid receptor activity Combining with a glucocorticoid and transmitting the signal within the cell trigger a change in cell activity or function. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061796 biolink:NamedThing membrane addition at site of mitotic cytokinesis A mitotic cell cycle process involved in the net addition of membrane at the site of cytokinesis; includes vesicle recruitment and fusion, local lipid synthesis and insertion. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-05T12:06:11Z biological_process owl:Class GO:2000362 biolink:NamedThing negative regulation of prostaglandin-E synthase activity Any process that stops, prevents or reduces the frequency, rate or extent of prostaglandin-E synthase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of Prostaglandin-H(2) E-isomerase activity|negative regulation of prostaglandin R-prostaglandin E isomerase activity|negative regulation of prostaglandin endoperoxide E2 isomerase activity|negative regulation of prostaglandin H-E isomerase activity|negative regulation of PGE2 isomerase activity|negative regulation of PGH-PGE isomerase activity|negative regulation of prostaglandin endoperoxide E isomerase activity|negative regulation of PGE isomerase activity|negative regulation of endoperoxide isomerase activity|negative regulation of prostaglandin-H2 E-isomerase activity|negative regulation of (5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate E-isomerase activity bf 2011-02-03T04:05:39Z biological_process owl:Class GO:2000361 biolink:NamedThing regulation of prostaglandin-E synthase activity Any process that modulates the frequency, rate or extent of prostaglandin-E synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of prostaglandin endoperoxide E2 isomerase activity|regulation of prostaglandin-H2 E-isomerase activity|regulation of PGE isomerase activity|regulation of PGH-PGE isomerase activity|regulation of PGE2 isomerase activity|regulation of prostaglandin endoperoxide E isomerase activity|regulation of (5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate E-isomerase activity|regulation of endoperoxide isomerase activity|regulation of Prostaglandin-H(2) E-isomerase activity|regulation of prostaglandin R-prostaglandin E isomerase activity|regulation of prostaglandin H-E isomerase activity bf 2011-02-03T04:05:35Z biological_process owl:Class GO:0071225 biolink:NamedThing cellular response to muramyl dipeptide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:41:23Z biological_process owl:Class GO:1901653 biolink:NamedThing cellular response to peptide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-20T09:45:19Z biological_process owl:Class GO:0102193 biolink:NamedThing protein-ribulosamine 3-kinase activity Catalysis of the reaction: ATP + a [protein]-N6-D-ribulosyl-L-lysine <=> ADP + a [protein]-N6-(3-O-phospho-D-ribulosyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl RHEA:48432|EC:2.7.1.172|MetaCyc:RXN-12003 molecular_function owl:Class GO:0009636 biolink:NamedThing response to toxic substance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus. tmpzr1t_l9r_go_relaxed.owl toxin resistance|detoxification response|toxin susceptibility/resistance biological_process owl:Class GO:0034671 biolink:NamedThing retinoic acid receptor signaling pathway involved in pronephros anterior/posterior pattern specification The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the pronephros. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in pronephros anterior-posterior patterning|retinoic acid receptor signaling pathway involved in pronephric kidney anterior/posterior pattern specification biological_process owl:Class GO:0048384 biolink:NamedThing retinoic acid receptor signaling pathway The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl RAR signaling pathway|retinoic acid receptor signalling pathway biological_process owl:Class GO:0010764 biolink:NamedThing negative regulation of fibroblast migration Any process that decreases the rate, frequency or extent of fibroblast cell migration. Fibroblast cell migration is accomplished by extension and retraction of a pseudopodium. tmpzr1t_l9r_go_relaxed.owl negative regulation of fibroblast cell migration biological_process owl:Class GO:0010762 biolink:NamedThing regulation of fibroblast migration Any process that modulates the rate, frequency or extent of fibroblast cell migration. Fibroblast cell migration is accomplished by extension and retraction of a pseudopodium. tmpzr1t_l9r_go_relaxed.owl regulation of fibroblast cell migration biological_process owl:Class GO:0000179 biolink:NamedThing rRNA (adenine-N6,N6-)-dimethyltransferase activity Catalysis of the dimethylation of two adjacent adenine residues in a rRNA, using S-adenosyl-L-methionine as a methyl donor. tmpzr1t_l9r_go_relaxed.owl dimethyladenosine transferase activity|18S rRNA dimethylase activity|S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase activity https://github.com/geneontology/go-ontology/issues/14459 Reactome:R-HSA-6793066|Reactome:R-HSA-6790994 GO:0043790 molecular_function owl:Class GO:0003028 biolink:NamedThing regulation of systemic arterial blood pressure by aortic body chemoreceptor signaling The process that modulates blood pressure by the action of chemoreceptors found in the aortic bodies and their resultant modulation of the vasomotor center. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions. tmpzr1t_l9r_go_relaxed.owl regulation of systemic arterial blood pressure by aortic body chemoreceptor signalling|aortic body chemoreceptor response to lowering of systemic arterial blood pressure|aortic body chemoreceptor regulation of systemic arterial blood pressure biological_process owl:Class GO:0001979 biolink:NamedThing regulation of systemic arterial blood pressure by chemoreceptor signaling The process that modulates blood pressure by the action of chemoreceptors found in the carotid and aortic bodies and their resultant modulation of the vasomotor center. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions. tmpzr1t_l9r_go_relaxed.owl regulation of systemic arterial blood pressure by chemoreceptor signalling|chemoreceptor regulation of systemic arterial blood pressure|chemoreceptor control of blood pressure biological_process owl:Class GO:0034166 biolink:NamedThing toll-like receptor 10 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 10. tmpzr1t_l9r_go_relaxed.owl TLR10 signaling pathway|toll-like receptor 10 signalling pathway biological_process owl:Class GO:0015026 biolink:NamedThing coreceptor activity Combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity. tmpzr1t_l9r_go_relaxed.owl coreceptor, soluble ligand activity|coreceptor, insoluble ligand activity GO:0015028|GO:0015027 molecular_function owl:Class GO:0043247 biolink:NamedThing telomere maintenance in response to DNA damage Any process that occur in response to the presence of critically short or damaged telomeres. tmpzr1t_l9r_go_relaxed.owl DNA damage response, telomere maintenance biological_process owl:Class GO:0000723 biolink:NamedThing telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. tmpzr1t_l9r_go_relaxed.owl regulation of telomere length biological_process owl:Class GO:1904912 biolink:NamedThing positive regulation of establishment of RNA localization to telomere Any process that activates or increases the frequency, rate or extent of establishment of RNA localization to telomere. tmpzr1t_l9r_go_relaxed.owl up regulation of establishment of RNA localisation to telomere|up-regulation of establishment of RNA localization to telomere|up-regulation of establishment of RNA localisation to telomere|upregulation of establishment of RNA localisation to telomere|activation of establishment of RNA localization to telomere|activation of establishment of RNA localisation to telomere|upregulation of establishment of RNA localization to telomere|positive regulation of establishment of RNA localisation to telomere|up regulation of establishment of RNA localization to telomere rph 2016-01-19T10:34:35Z biological_process owl:Class GO:0046604 biolink:NamedThing positive regulation of mitotic centrosome separation Any process that activates or increases the frequency, rate or extent of centrosome separation. tmpzr1t_l9r_go_relaxed.owl upregulation of mitotic centrosome separation|up-regulation of mitotic centrosome separation|up regulation of mitotic centrosome separation|activation of mitotic centrosome separation|stimulation of mitotic centrosome separation biological_process owl:Class GO:0090068 biolink:NamedThing positive regulation of cell cycle process Any process that increases the rate, frequency or extent of a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-09T11:39:52Z biological_process owl:Class GO:0030714 biolink:NamedThing anterior/posterior axis specification, follicular epithelium Polarization of the follicle cells of an insect ovary along the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl anterior/posterior axis determination, follicular epithelium biological_process owl:Class GO:1904915 biolink:NamedThing positive regulation of establishment of protein-containing complex localization to telomere Any process that activates or increases the frequency, rate or extent of establishment of the localization of a protein-containing macromolecular complex to a telomere. tmpzr1t_l9r_go_relaxed.owl up regulation of establishment of macromolecular complex localization to telomere|up regulation of establishment of macromolecular complex localisation to telomere|upregulation of establishment of macromolecular complex localisation to telomere|positive regulation of establishment of macromolecular complex localisation to telomere|positive regulation of establishment of macromolecular complex localization to telomere|activation of establishment of macromolecular complex localization to telomere|up-regulation of establishment of macromolecular complex localization to telomere|up-regulation of establishment of macromolecular complex localisation to telomere|upregulation of establishment of macromolecular complex localization to telomere|activation of establishment of macromolecular complex localisation to telomere rph 2016-01-19T10:38:36Z biological_process owl:Class GO:0015515 biolink:NamedThing citrate:succinate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: citrate(out) + succinate(in) = citrate(in) + succinate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015301 biolink:NamedThing anion:anion antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: anion A(out) + anion B(in) = anion A(in) + anion B(out). tmpzr1t_l9r_go_relaxed.owl anion exchanger activity|bicarbonate:chloride antiporter Reactome:R-HSA-561041 GO:0015384|GO:0015380 molecular_function owl:Class GO:0048379 biolink:NamedThing positive regulation of lateral mesodermal cell fate specification Any process that activates or increases the frequency, rate or extent of lateral mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl up regulation of lateral mesodermal cell fate specification|upregulation of lateral mesodermal cell fate specification|stimulation of lateral mesodermal cell fate specification|up-regulation of lateral mesodermal cell fate specification|activation of lateral mesodermal cell fate specification|positive regulation of lateral plate mesodermal cell fate specification biological_process owl:Class GO:0048378 biolink:NamedThing regulation of lateral mesodermal cell fate specification Any process that modulates the frequency, rate or extent of lateral mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl regulation of lateral plate mesodermal cell fate specification biological_process owl:Class GO:1905914 biolink:NamedThing positive regulation of calcium ion export across plasma membrane Any process that activates or increases the frequency, rate or extent of calcium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion export from cell|positive regulation of calcium ion efflux from cell|positive regulation of calcium ion export from cell|activation of calcium ion export from cell|activation of calcium ion efflux from cell|upregulation of calcium ion efflux from cell|upregulation of calcium ion export from cell|up regulation of calcium ion export from cell|up-regulation of calcium ion efflux from cell|up regulation of calcium ion efflux from cell rph 2017-02-07T13:20:56Z biological_process owl:Class GO:1904427 biolink:NamedThing positive regulation of calcium ion transmembrane transport Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up regulation of calcium ion membrane transport|activation of calcium ion transmembrane transport|positive regulation of calcium ion membrane transport|upregulation of calcium ion transmembrane transport|activation of calcium ion membrane transport|up-regulation of calcium ion transmembrane transport|positive regulation of transmembrane calcium transport|upregulation of calcium ion membrane transport|up regulation of calcium ion transmembrane transport|upregulation of transmembrane calcium transport|activation of transmembrane calcium transport|up regulation of transmembrane calcium transport|up-regulation of calcium ion membrane transport|up-regulation of transmembrane calcium transport sl 2015-07-02T20:44:25Z biological_process owl:Class GO:1904785 biolink:NamedThing regulation of asymmetric protein localization involved in cell fate determination Any process that modulates the frequency, rate or extent of asymmetric protein localization involved in cell fate determination. tmpzr1t_l9r_go_relaxed.owl regulation of asymmetric protein localisation involved in cell fate determination|regulation of asymmetric protein localization involved in cell fate commitment|regulation of cell fate commitment, asymmetric protein localization|regulation of asymmetric protein localization resulting in cell fate commitment wrm-1 in C. Elegans (Q10953) in PMID:17476329 (IMP) es 2015-11-03T12:11:06Z biological_process owl:Class GO:2000453 biolink:NamedThing negative regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta cytotoxic T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:45:20Z biological_process owl:Class GO:2000450 biolink:NamedThing negative regulation of CD8-positive, alpha-beta T cell extravasation Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:41:43Z biological_process owl:Class GO:0085044 biolink:NamedThing disassembly by symbiont of host cuticle The process in which a symbiont organism effects a breakdown of the host organism cuticle. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism of host cuticle|degradation of host cuticle jl 2010-07-27T01:08:15Z biological_process owl:Class GO:0052111 biolink:NamedThing modification by symbiont of host structure The process in which an organism effects a change in an anatomical part or cellular component of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900024 biolink:NamedThing regulation of substrate adhesion-dependent cell spreading Any process that modulates the frequency, rate or extent of substrate adhesion-dependent cell spreading. tmpzr1t_l9r_go_relaxed.owl regulation of cell spreading during cell substrate adhesion|regulation of substrate adhesion dependent cell spreading yaf 2012-01-12T05:00:39Z biological_process owl:Class GO:0098948 biolink:NamedThing intrinsic component of postsynaptic specialization membrane The component of the postsynaptic specialization membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic specialization membrane cellular_component owl:Class GO:0098936 biolink:NamedThing intrinsic component of postsynaptic membrane The component of the postsynaptic membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic membrane cellular_component owl:Class GO:2000843 biolink:NamedThing regulation of testosterone secretion Any process that modulates the frequency, rate or extent of testosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:42:29Z biological_process owl:Class GO:0046883 biolink:NamedThing regulation of hormone secretion Any process that modulates the frequency, rate or extent of the regulated release of a hormone from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045057 biolink:NamedThing cisternal progression The process that results in the physical movement of a new cis-Golgi stack from the cis-position, nearest the endoplasmic reticulum (ER), to the trans position, farthest from the ER, successively becoming first a medial-Golgi cisterna and then a trans-Golgi cisterna. tmpzr1t_l9r_go_relaxed.owl cisternal maturation biological_process owl:Class GO:0006891 biolink:NamedThing intra-Golgi vesicle-mediated transport The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). tmpzr1t_l9r_go_relaxed.owl intra-Golgi transport biological_process owl:Class GO:0060085 biolink:NamedThing smooth muscle relaxation of the bladder outlet A process in which the extent of smooth muscle contraction is reduced in the bladder outlet that contributes to the expulsion of urine from the body. tmpzr1t_l9r_go_relaxed.owl synaptic transmission involved in urination biological_process owl:Class GO:0044557 biolink:NamedThing relaxation of smooth muscle A process in which the extent of smooth muscle contraction is reduced. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length. tmpzr1t_l9r_go_relaxed.owl smooth muscle relaxation jl 2012-04-05T02:42:28Z biological_process owl:Class GO:0061286 biolink:NamedThing mesonephric capsule morphogenesis The process in which the anatomical structures of the mesonephric capsule are generated and organized. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:53:31Z biological_process owl:Class GO:0072128 biolink:NamedThing renal capsule morphogenesis The process in which the anatomical structures of the renal capsule are generated and organized. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:06:19Z biological_process owl:Class GO:2000404 biolink:NamedThing regulation of T cell migration Any process that modulates the frequency, rate or extent of T cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte migration|regulation of T-lymphocyte migration|regulation of T-cell migration mah 2011-02-23T10:48:24Z biological_process owl:Class GO:0051512 biolink:NamedThing positive regulation of unidimensional cell growth Any process that activates or increases the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. tmpzr1t_l9r_go_relaxed.owl stimulation of unidimensional cell growth|positive regulation of cell elongation|up regulation of unidimensional cell growth|up-regulation of unidimensional cell growth|upregulation of unidimensional cell growth|activation of unidimensional cell growth biological_process owl:Class GO:0046882 biolink:NamedThing negative regulation of follicle-stimulating hormone secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl downregulation of follicle-stimulating hormone secretion|down-regulation of follicle-stimulating hormone secretion|negative regulation of follicle stimulating hormone secretion|down regulation of follicle-stimulating hormone secretion|inhibition of follicle-stimulating hormone secretion biological_process owl:Class GO:0045850 biolink:NamedThing positive regulation of nurse cell apoptotic process Any process that activates or increases the frequency, rate or extent of nurse cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl stimulation of nurse cell apoptosis|up regulation of nurse cell apoptosis|positive regulation of nurse cell apoptosis|up-regulation of nurse cell apoptosis|activation of nurse cell apoptosis|upregulation of nurse cell apoptosis biological_process owl:Class GO:1900776 biolink:NamedThing fumiquinazoline A metabolic process The chemical reactions and pathways involving fumiquinazoline A. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline A metabolism di 2012-06-04T09:29:58Z biological_process owl:Class GO:1900773 biolink:NamedThing fumiquinazoline metabolic process The chemical reactions and pathways involving fumiquinazoline. tmpzr1t_l9r_go_relaxed.owl fumiquinazolines metabolism|fumiquinazoline metabolism|fumiquinazolines metabolic process di 2012-06-04T09:29:22Z biological_process owl:Class GO:0010269 biolink:NamedThing response to selenium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000045 biolink:NamedThing regulation of G1/S transition of mitotic cell cycle Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl Note that this process is usually achieved by the regulation of the G1 cyclin-dependent protein kinase, consider annotating to the child term 'regulation of cyclin-dependent protein kinase activity involved in G1/S ; GO:0031657'. tb 2010-08-19T09:10:56Z biological_process owl:Class GO:1902806 biolink:NamedThing regulation of cell cycle G1/S phase transition Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-26T16:36:14Z biological_process owl:Class GO:0031950 biolink:NamedThing negative regulation of glucocorticoid catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl inhibition of glucocorticoid catabolic process|downregulation of glucocorticoid catabolic process|down regulation of glucocorticoid catabolic process|down-regulation of glucocorticoid catabolic process biological_process owl:Class GO:0080188 biolink:NamedThing gene silencing by RNA-directed DNA methylation A small RNA-based epigenetic gene silencing process in which small interfering RNAs (siRNAs) guide DNA methylation to the siRNA-generating genomic loci and other loci that are homologous to the siRNAs for de novo DNA methylation. This results in a heterochromatin assembly, a chromatin conformation that is refractory to transcription. In general this process consists of three phases: biogenesis of siRNAs, scaffold RNA production, and the formation of the guiding complex that recruits de novo DNA methyltransferases to the target loci. Transposable elements are silenced by this mechanism. tmpzr1t_l9r_go_relaxed.owl RNA-directed DNA methylation|RdDM https://github.com/geneontology/go-ontology/issues/19328|https://github.com/geneontology/go-ontology/issues/22047 This process has been shown in plants and in yeasts, but so far has not been detected in vertebrates, organisms that lack RNA-dependent RNA polymerase. dhl 2012-05-22T02:22:50Z biological_process owl:Class GO:0140458 biolink:NamedThing pre-transcriptional gene silencing by RNA Any gene inactivation (silencing) process mediated by small RNA molecules that occur before the trancription begins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19328 pg 2020-04-24T07:19:09Z biological_process owl:Class GO:0060285 biolink:NamedThing cilium-dependent cell motility Cell motility due to the motion of one or more eukaryotic cilia. A eukaryotic cilium is a specialized organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole. tmpzr1t_l9r_go_relaxed.owl microtubule-based flagellar cell motility|ciliary cell motility|cilium cell motility Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent. GO:0071974 biological_process owl:Class GO:0001539 biolink:NamedThing cilium or flagellum-dependent cell motility Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella. tmpzr1t_l9r_go_relaxed.owl ciliary/flagellar motility|ciliary or bacterial-type flagellar motility Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC. biological_process owl:Class GO:0018960 biolink:NamedThing 4-nitrophenol metabolic process The chemical reactions and pathways involving 4-nitrophenol, a nitroaromatic compound which is used in the production of dyes, leather treatment agents, fungicides and as an intermediate in the production of the insecticide parathion. tmpzr1t_l9r_go_relaxed.owl 4-nitrophenol metabolism|p-nitrophenol metabolism|p-nitrophenol metabolic process UM-BBD_pathwayID:nphe biological_process owl:Class GO:0006235 biolink:NamedThing dTTP biosynthetic process The chemical reactions and pathways resulting in the formation of dTTP, deoxyribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl dTTP anabolism|dTTP synthesis|dTTP formation|dTTP biosynthesis biological_process owl:Class GO:1900197 biolink:NamedThing negative regulation of penicillin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of penicillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of penicillin anabolism|downregulation of penicillin biosynthetic process|down regulation of penicillin anabolism|negative regulation of penicillin synthesis|downregulation of penicillin biosynthesis|downregulation of penicillin formation|downregulation of penicillin synthesis|downregulation of penicillin anabolism|inhibition of penicillin biosynthesis|down-regulation of penicillin biosynthesis|inhibition of penicillin formation|negative regulation of penicillin formation|negative regulation of penicillin anabolism|down-regulation of penicillin anabolism|down-regulation of penicillin biosynthetic process|down-regulation of penicillin synthesis|inhibition of penicillin synthesis|inhibition of penicillin biosynthetic process|down regulation of penicillin biosynthesis|down regulation of penicillin biosynthetic process|negative regulation of penicillin biosynthesis|down regulation of penicillin formation|down-regulation of penicillin formation|down regulation of penicillin synthesis di 2012-03-20T03:56:43Z biological_process owl:Class GO:2000301 biolink:NamedThing negative regulation of synaptic vesicle exocytosis Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl dph 2011-01-03T08:21:00Z biological_process owl:Class GO:0043641 biolink:NamedThing novobiocin metabolic process The chemical reactions and pathways involving novobiocin, a coumarin antibiotic produced by the bacterium Gyrasestreptomyces spheroides, that acts by inhibiting DNA gyrase. tmpzr1t_l9r_go_relaxed.owl novobiocin metabolism Wikipedia:Novobiocin biological_process owl:Class GO:0009804 biolink:NamedThing coumarin metabolic process The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. tmpzr1t_l9r_go_relaxed.owl coumarin metabolism biological_process owl:Class GO:0014741 biolink:NamedThing negative regulation of muscle hypertrophy Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042816 biolink:NamedThing vitamin B6 metabolic process The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl vitamin B6 metabolism biological_process owl:Class GO:0006767 biolink:NamedThing water-soluble vitamin metabolic process The chemical reactions and pathways involving any of a diverse group of vitamins that are soluble in water. tmpzr1t_l9r_go_relaxed.owl water-soluble vitamin metabolism biological_process owl:Class GO:0098829 biolink:NamedThing intestinal folate absorption Uptake of folic into the blood by absorption from the small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015884 biolink:NamedThing folic acid transport The directed movement of folic acid (pteroylglutamic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. tmpzr1t_l9r_go_relaxed.owl vitamin B9 transport|folate transport|vitamin M transport biological_process owl:Class GO:1900035 biolink:NamedThing negative regulation of cellular response to heat Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to heat. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular response to heat|down-regulation of cellular response to heat|inhibition of cellular response to heat stress|inhibition of cellular response to heat|downregulation of cellular response to heat|down-regulation of cellular response to heat stress|negative regulation of cellular response to heat stress|downregulation of cellular response to heat stress|down regulation of cellular response to heat stress yaf 2012-01-17T09:27:44Z biological_process owl:Class GO:1900034 biolink:NamedThing regulation of cellular response to heat Any process that modulates the frequency, rate or extent of cellular response to heat. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to heat stress yaf 2012-01-17T09:27:40Z biological_process owl:Class GO:0019288 biolink:NamedThing isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl isopentenyl diphosphate biosynthetic process, MEP pathway|mevalonate-independent isopentenyl diphosphate biosynthetic process|isopentenyl diphosphate biosynthetic process, non-mevalonate pathway|isopentenyl diphosphate formation, mevalonate-independent pathway|non-MVA pathway|isopentenyl diphosphate biosynthesis, non-mevalonate pathway|isopentenyl diphosphate biosynthetic process via 1-deoxy-D-xylulose 5-phosphate|isopentenyl diphosphate anabolism, mevalonate-independent pathway|isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|isopentenyl diphosphate biosynthetic process, mevalonate-independent|mevalonate-independent isopentenyl diphosphate biosynthesis|isopentenyl diphosphate biosynthesis, mevalonate-independent|isopentenyl diphosphate synthesis, mevalonate-independent pathway MetaCyc:NONMEVIPP-PWY biological_process owl:Class GO:0006090 biolink:NamedThing pyruvate metabolic process The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. tmpzr1t_l9r_go_relaxed.owl pyruvate dehydrogenase bypass|pyruvate metabolism MetaCyc:P41-PWY|Wikipedia:Pyruvic_acid GO:0006087 biological_process owl:Class GO:0060229 biolink:NamedThing lipase activator activity Binds to and increases the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900362 biolink:NamedThing positive regulation of pentasaccharide transport Any process that activates or increases the frequency, rate or extent of pentasaccharide transport. tmpzr1t_l9r_go_relaxed.owl up regulation of pentasaccharide transport|up-regulation of pentasaccharide transport|upregulation of pentasaccharide transport|activation of pentasaccharide transport tt 2012-04-06T02:19:44Z biological_process owl:Class GO:1900800 biolink:NamedThing cspyrone B1 metabolic process The chemical reactions and pathways involving cspyrone B1. tmpzr1t_l9r_go_relaxed.owl cspyrone B1 metabolism di 2012-06-04T09:50:37Z biological_process owl:Class GO:0071102 biolink:NamedThing alpha4-beta1 integrin-paxillin complex A protein complex that consists of an alpha4-beta1 integrin complex bound to paxillin. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-PXN complex mah 2009-11-06T04:53:22Z cellular_component owl:Class GO:0034758 biolink:NamedThing positive regulation of iron ion transport Any process that activates or increases the frequency, rate or extent of the directed movement of iron ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl upregulation of iron ion transport|activation of iron ion transport|positive regulation of iron transport|up-regulation of iron ion transport|stimulation of iron ion transport|up regulation of iron ion transport biological_process owl:Class GO:0019029 biolink:NamedThing helical viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019028 biolink:NamedThing viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Capsid GO:0046728 cellular_component owl:Class GO:1905942 biolink:NamedThing regulation of formation of growth cone in injured axon Any process that modulates the frequency, rate or extent of formation of growth cone in injured axon. tmpzr1t_l9r_go_relaxed.owl rz 2017-02-13T09:09:05Z biological_process owl:Class GO:1904450 biolink:NamedThing positive regulation of aspartate secretion Any process that activates or increases the frequency, rate or extent of aspartate secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of aspartate secretion|upregulation of aspartate secretion|up regulation of aspartate secretion|activation of aspartate secretion sl 2015-07-07T20:57:10Z biological_process owl:Class GO:0051217 biolink:NamedThing molybdenum incorporation via L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide) The incorporation of molybdenum into a protein via L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide). tmpzr1t_l9r_go_relaxed.owl RESID:AA0375 biological_process owl:Class GO:0060789 biolink:NamedThing hair follicle placode formation The developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:18:26Z biological_process owl:Class GO:0060788 biolink:NamedThing ectodermal placode formation The developmental process in which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:15:57Z biological_process owl:Class GO:0060543 biolink:NamedThing negative regulation of strand invasion Any process that decreases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl negative regulation of D-loop biosynthesis|negative regulation of Rad51-mediated strand invasion|negative regulation of D-loop formation dph 2009-04-13T01:32:36Z biological_process owl:Class GO:0008626 biolink:NamedThing granzyme-mediated apoptotic signaling pathway A series of molecular signals induced by granzymes which triggers the apoptotic death of a cell. The pathway starts with reception of a granzyme signal, and ends when the execution phase of apoptosis is triggered. Granzymes are serine proteases that are secreted by cytotoxic T cells and natural killer cells to induce apoptosis in target cells. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis by granzyme|apoptotic signaling pathway in response to granzyme http://wiki.geneontology.org/index.php/Apoptosis_Curation_Manual#Other_children_of_apoptotic_signaling_pathway biological_process owl:Class GO:0047229 biolink:NamedThing 13-hydroxydocosanoate 13-beta-glucosyltransferase activity Catalysis of the reaction: 13-hydroxydocosanoate + UDP-D-glucose = 13-beta-D-glucosyloxydocosanoate + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:13-hydroxydocosanoic acid glucosyltransferase activity|uridine diphosphoglucose-hydroxydocosanoate glucosyltransferase activity|UDPglucose:13-hydroxydocosanoate 13-beta-D-glucosyltransferase activity|UDP-glucose:13-hydroxydocosanoate 13-beta-D-glucosyltransferase activity|UDP-glucose-13-hydroxydocosanoate glucosyltransferase activity|13-glucosyloxydocosanoate 2'-beta-glucosyltransferase activity EC:2.4.1.158|MetaCyc:HYDROXYDOCOSANOATE-TRANS-RXN|RHEA:22316 molecular_function owl:Class GO:0019477 biolink:NamedThing L-lysine catabolic process The chemical reactions and pathways resulting in the breakdown of L-lysine, the L-enantiomer of (S)-2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl L-lysine breakdown|L-lysine degradation|L-lysine catabolism biological_process owl:Class GO:0046440 biolink:NamedThing L-lysine metabolic process The chemical reactions and pathways involving L-lysine, the L-enantiomer of (S)-2,6-diaminohexanoic acid, i.e. (2S)-2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl L-lysine metabolism biological_process owl:Class GO:1902611 biolink:NamedThing cellular response to N-phenylthiourea Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a N-phenylthiourea stimulus. tmpzr1t_l9r_go_relaxed.owl rjd 2014-01-08T01:57:58Z biological_process owl:Class GO:1901802 biolink:NamedThing 1,5-anhydro-D-fructose catabolic process The chemical reactions and pathways resulting in the breakdown of 1,5-anhydro-D-fructose. tmpzr1t_l9r_go_relaxed.owl 1,5-anhydro-D-fructose degradation|1,5-anhydro-D-fructose catabolism|1,5-anhydro-D-fructose breakdown yaf 2013-01-22T09:56:25Z biological_process owl:Class GO:0021933 biolink:NamedThing radial glia guided migration of cerebellar granule cell The inward migration of postmitotic granule cells along a radial glial cell from the external granule layer to the internal granule cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021932 biolink:NamedThing hindbrain radial glia guided cell migration The radially directed movement of a cell along radial glial cells in the hindbrain. Radial migration refers to a directed movement from the internal ventricular area to the outer surface of the hindbrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035875 biolink:NamedThing maintenance of meiotic sister chromatid cohesion, centromeric The process in which the association between sister chromatids of a replicated chromosome along the length of the centromeric region is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl maintenance of meiotic sister chromatin cohesion at centromere|maintenance of sister chromatin cohesion at centromere at meiosis I|maintenance of centromeric meiotic sister chromatin cohesion bf 2011-05-31T09:35:51Z biological_process owl:Class GO:0034090 biolink:NamedThing maintenance of meiotic sister chromatid cohesion The process in which the association between sister chromatids of a replicated chromosome is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032215 biolink:NamedThing positive regulation of telomere maintenance via semi-conservative replication Any process that activates or increases the frequency, rate or extent of the semi-conservative replication of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl upregulation of telomere maintenance via semi-conservative replication|up regulation of telomere maintenance via semi-conservative replication|up-regulation of telomere maintenance via semi-conservative replication|stimulation of telomere maintenance via semi-conservative replication|activation of telomere maintenance via semi-conservative replication biological_process owl:Class GO:0045253 biolink:NamedThing pyruvate dehydrogenase (lipoamide) phosphatase complex A complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'cytosolic pyruvate dehydrogenase complex ; GO:0045250'. cellular_component owl:Class GO:0015234 biolink:NamedThing thiamine transmembrane transporter activity Enables the transfer of thiamine from one side of a membrane to the other. Thiamine is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl thiamin uptake transporter activity|vitamin B1 transporter activity|thiamin permease activity|thiamine permease activity|thiamin transmembrane transporter activity|thiamine uptake transmembrane transporter activity RHEA:34919|Reactome:R-HSA-199626 GO:0015403|GO:0015402 molecular_function owl:Class GO:1904103 biolink:NamedThing regulation of convergent extension involved in gastrulation Any process that modulates the frequency, rate or extent of convergent extension involved in gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-01T11:17:05Z biological_process owl:Class GO:0015976 biolink:NamedThing carbon utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. tmpzr1t_l9r_go_relaxed.owl heterotrophy|carbon utilization by utilization of organic compounds Wikipedia:Heterotroph GO:0015978 biological_process owl:Class GO:0140241 biolink:NamedThing translation at synapse Translation that occurs at the synapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T09:23:12Z biological_process owl:Class GO:0006412 biolink:NamedThing translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. tmpzr1t_l9r_go_relaxed.owl protein biosynthesis|protein biosynthetic process|protein formation|protein anabolism|protein synthesis|protein translation Wikipedia:Translation_(genetics) GO:0006416|GO:0043037|GO:0006453 biological_process owl:Class GO:0018624 biolink:NamedThing toluene dioxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + toluene = (1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol + NAD(+). tmpzr1t_l9r_go_relaxed.owl toluene,NADH:oxygen oxidoreductase (1,2-hydroxylating)|toluene 1,2-dioxygenase activity|toluene 2,3-dioxygenase activity UM-BBD_enzymeID:e0155|MetaCyc:TOLUENE-DIOXYGENASE-RXN|KEGG_REACTION:R03559|EC:1.14.12.11|RHEA:16737 molecular_function owl:Class GO:1905234 biolink:NamedThing cellular response to codeine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a codeine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T21:26:53Z biological_process owl:Class GO:0071317 biolink:NamedThing cellular response to isoquinoline alkaloid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isoquinoline alkaloid stimulus. An isoquinoline alkaloid is any member of a group of compounds with the heterocyclic ring structure of benzo(c)pyridine which is a structure characteristic of the group of opium alkaloids. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:06:08Z biological_process owl:Class GO:0070134 biolink:NamedThing positive regulation of mitochondrial translational initiation Any process that activates or increases the frequency, rate or extent of the process preceding formation of the peptide bond between the first two amino acids of a protein in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial translation initiation biological_process owl:Class GO:0070131 biolink:NamedThing positive regulation of mitochondrial translation Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial protein biosynthesis|positive regulation of mitochondrial protein formation|positive regulation of mitochondrial protein anabolism|positive regulation of mitochondrial protein synthesis biological_process owl:Class GO:0032760 biolink:NamedThing positive regulation of tumor necrosis factor production Any process that activates or increases the frequency, rate or extent of tumor necrosis factor production. tmpzr1t_l9r_go_relaxed.owl positive regulation of tumor necrosis factor biosynthesis|positive regulation of TNF-alpha production|positive regulation of tumor necrosis factor-alpha production|stimulation of tumor necrosis factor production|positive regulation of tumor necrosis factor formation|positive regulation of tumor necrosis factor biosynthetic process|activation of tumor necrosis factor production|positive regulation of TNF production|positive regulation of tumor necrosis factor secretion|up-regulation of tumor necrosis factor production|positive regulation of cachectin secretion|up regulation of tumor necrosis factor production|upregulation of tumor necrosis factor production|positive regulation of TNF secretion Note that this term refers only to the specific, original 'tumor necrosis factor' protein (TNF) and not other members of the tumor necrosis factor superfamily (those with the gene symbol root 'TNFSF'). sl 2015-07-09T19:50:14Z GO:0042535|GO:1904469 biological_process owl:Class GO:1905281 biolink:NamedThing positive regulation of retrograde transport, endosome to Golgi Any process that activates or increases the frequency, rate or extent of retrograde transport, endosome to Golgi. tmpzr1t_l9r_go_relaxed.owl positive regulation of retrograde (endosome to Golgi) transport|upregulation of retrograde (endosome to Golgi) transport|activation of retrograde transport, endosome to Golgi|up-regulation of retrograde transport, endosome to Golgi|activation of retrograde (endosome to Golgi) transport|upregulation of retrograde transport, endosome to Golgi|up-regulation of retrograde (endosome to Golgi) transport|up regulation of retrograde transport, endosome to Golgi|up regulation of retrograde (endosome to Golgi) transport bf 2016-06-20T12:25:44Z biological_process owl:Class GO:1905279 biolink:NamedThing regulation of retrograde transport, endosome to Golgi Any process that modulates the frequency, rate or extent of retrograde transport, endosome to Golgi. tmpzr1t_l9r_go_relaxed.owl regulation of retrograde (endosome to Golgi) transport bf 2016-06-20T12:25:29Z biological_process owl:Class GO:1903472 biolink:NamedThing negative regulation of mitotic actomyosin contractile ring contraction Any process that stops, prevents or reduces the frequency, rate or extent of mitotic actomyosin contractile ring contraction. tmpzr1t_l9r_go_relaxed.owl down-regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|down-regulation of mitotic actomyosin contractile ring contraction|inhibition of mitotic actomyosin contractile ring contraction|downregulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|downregulation of mitotic actomyosin contractile ring contraction|down-regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|inhibition of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|down regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|down regulation of mitotic actomyosin contractile ring contraction|negative regulation of mitotic actomyosin contractile ring constriction|negative regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|downregulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|negative regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|down regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|inhibition of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle https://github.com/geneontology/go-ontology/issues/21855 vw 2014-09-23T14:10:38Z biological_process owl:Class GO:0043127 biolink:NamedThing negative regulation of 1-phosphatidylinositol 4-kinase activity Any process that stops or reduces the activity of the enzyme 1-phosphatidylinositol 4-kinase. tmpzr1t_l9r_go_relaxed.owl negative regulation of PI4K activity|downregulation of 1-phosphatidylinositol 4-kinase activity|inhibition of 1-phosphatidylinositol 4-kinase activity|down regulation of 1-phosphatidylinositol 4-kinase activity|down-regulation of 1-phosphatidylinositol 4-kinase activity biological_process owl:Class GO:0090219 biolink:NamedThing negative regulation of lipid kinase activity Any process that decreases the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-12T10:18:30Z biological_process owl:Class GO:0044028 biolink:NamedThing DNA hypomethylation An decrease in the epigenetic methylation of cytosine and adenosine residues in DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044030 biolink:NamedThing regulation of DNA methylation Any process that modulates the frequency, rate or extent of the covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043639 biolink:NamedThing benzoate catabolic process The chemical reactions and pathways resulting in the breakdown of benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid. tmpzr1t_l9r_go_relaxed.owl benzoate breakdown|benzoate catabolism|benzoate degradation biological_process owl:Class GO:0035098 biolink:NamedThing ESC/E(Z) complex A multimeric protein complex that can methylate lysine-27 and lysine-9 residues of histone H3. In Drosophila the core subunits of the complex include ESC, E(Z), CAF1 (NURF-55) and SU(Z)12. In mammals the core subunits of the complex include EED, EZH2, SUZ12 and RBBP4. tmpzr1t_l9r_go_relaxed.owl PRC2 complex|Extra Sex Combs/Enhancer of Zeste complex cellular_component owl:Class GO:0035097 biolink:NamedThing histone methyltransferase complex A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990565 biolink:NamedThing HSP90-CDC37 chaperone complex A protein kinase chaperone complex required for the proper folding, maturation and stabilization of target proteins (mostly signalling protein kinases, some steroid hormone receptors), usually during or immediately after completion of translation. The highly conserved, phosphorylated CDC37-Ser13 (vertebrates) or cdc37-Ser14 (yeast) is essential for complex assembly and target protein binding. CDC37-Ser13 (Ser14) is phosphorylated by Casein kinase II (CK2), which in turn is a target of CDC37 creating a positive feedback loop. Complex binding also prevents rapid ubiquitin-dependent proteosomal degradation of target proteins. tmpzr1t_l9r_go_relaxed.owl An example of this is HSP90AB1 in human (UniProt symbol P08238) in PMID:21855797 (inferred from direct assay). bhm 2014-11-26T14:22:51Z cellular_component owl:Class GO:0101031 biolink:NamedThing chaperone complex A protein complex required for the non-covalent folding or unfolding, maturation, stabilization or assembly or disassembly of macromolecular structures. Usually active during or immediately after completion of translation. Many chaperone complexes contain heat shock proteins. tmpzr1t_l9r_go_relaxed.owl An example of this is HSP90AB1 in human (P08238) in PMID:21855797 (inferred from direct assay). cellular_component owl:Class GO:0030707 biolink:NamedThing ovarian follicle cell development The process that occurs during oogenesis involving the ovarian follicle cells, somatic cells which surround the germ cells of an ovary. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019537 biolink:NamedThing vibriobactin biosynthetic process The chemical reactions and pathways resulting in the formation of vibriobactin, the major siderophore produced by Vibrio cholerae. tmpzr1t_l9r_go_relaxed.owl vibriobactin biosynthetic process, peptide modification|vibriobactin formation|vibriobactin biosynthetic process, peptide formation|vibriobactin anabolism|vibriobactin biosynthesis|vibriobactin synthesis GO:0031195|GO:0031196 biological_process owl:Class GO:1902519 biolink:NamedThing response to docetaxel trihydrate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a docetaxel trihydrate stimulus. tmpzr1t_l9r_go_relaxed.owl response to docetaxel Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2013-12-02T09:44:04Z biological_process owl:Class GO:0007612 biolink:NamedThing learning Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Learning biological_process owl:Class GO:0007611 biolink:NamedThing learning or memory The acquisition and processing of information and/or the storage and retrieval of this information over time. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046865 biolink:NamedThing terpenoid transport The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046864 biolink:NamedThing isoprenoid transport The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140410 biolink:NamedThing solute:bicarbonate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + HCO3-(out) = solute(in) + HCO3-(in). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18345 pg 2020-01-07T16:58:49Z molecular_function owl:Class GO:0015106 biolink:NamedThing bicarbonate transmembrane transporter activity Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2752067|RHEA:28695 molecular_function owl:Class GO:0045813 biolink:NamedThing positive regulation of Wnt signaling pathway, calcium modulating pathway Any process that activates or increases the frequency, rate or extent of the series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC). tmpzr1t_l9r_go_relaxed.owl stimulation of frizzled-2 signaling pathway|activation of frizzled-2 signaling pathway|positive regulation of Wnt receptor signaling pathway, calcium modulating pathway|positive regulation of Wnt-activated signaling pathway, calcium modulating pathway|upregulation of frizzled-2 signaling pathway|up regulation of frizzled-2 signaling pathway|positive regulation of frizzled-2 signalling pathway|positive regulation of frizzled-2 signaling pathway|up-regulation of frizzled-2 signaling pathway biological_process owl:Class GO:0102623 biolink:NamedThing scutellarein 7-methyl ether 6-O-methyltransferase activity Catalysis of the reaction: scutellarein 7-methyl ether + S-adenosyl-L-methionine <=> cirsimaritin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15528 molecular_function owl:Class GO:1904024 biolink:NamedThing negative regulation of glucose catabolic process to lactate via pyruvate Any process that stops, prevents or reduces the frequency, rate or extent of glucose catabolic process to lactate via pyruvate. tmpzr1t_l9r_go_relaxed.owl inhibition of homolactic fermentation|down-regulation of homofermentative pathway|downregulation of homolactate fermentation|negative regulation of homofermentation|down-regulation of homofermentation|negative regulation of glucose fermentation to lactate via pyruvate|down regulation of homolactate fermentation|down regulation of homofermentative pathway|downregulation of glucose fermentation to lactate via pyruvate|downregulation of homofermentation|negative regulation of homofermentative pathway|down regulation of homolactic fermentation|down-regulation of glucose fermentation to lactate via pyruvate|inhibition of homolactate fermentation|inhibition of homofermentative lactate fermentation|down-regulation of homolactate fermentation|inhibition of glucose fermentation to lactate via pyruvate|downregulation of homolactic fermentation|inhibition of homofermentative pathway|down-regulation of glucose catabolic process to lactate via pyruvate|negative regulation of homofermentative lactate fermentation|downregulation of homofermentative pathway|down-regulation of homofermentative lactate fermentation|down regulation of glucose catabolic process to lactate via pyruvate|down regulation of homofermentative lactate fermentation|negative regulation of homolactate fermentation|down-regulation of homolactic fermentation|inhibition of homofermentation|inhibition of glucose catabolic process to lactate via pyruvate|down regulation of glucose fermentation to lactate via pyruvate|downregulation of glucose catabolic process to lactate via pyruvate|negative regulation of homolactic fermentation|down regulation of homofermentation|downregulation of homofermentative lactate fermentation dph 2015-03-11T16:57:38Z biological_process owl:Class GO:1900555 biolink:NamedThing emericellamide metabolic process The chemical reactions and pathways involving emericellamide. tmpzr1t_l9r_go_relaxed.owl emericellamide metabolism di 2012-05-15T01:32:19Z biological_process owl:Class GO:0018074 biolink:NamedThing peptidyl-histidine bromination The bromination of peptidyl-histidine to form peptidyl-L-bromohistidine; the position of the bromine substitution is unknown. tmpzr1t_l9r_go_relaxed.owl RESID:AA0173 biological_process owl:Class GO:0018073 biolink:NamedThing protein bromination The addition of one or more bromine atoms to an amino acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid bromination biological_process owl:Class GO:1904958 biolink:NamedThing positive regulation of midbrain dopaminergic neuron differentiation Any process that activates or increases the frequency, rate or extent of midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of midbrain dopaminergic neuron production|upregulation of DA neurogenesis from midbrain floor plate|up-regulation of midbrain dopaminergic neuron differentiation|upregulation of midbrain dopaminergic neuron production|up regulation of midbrain DA neurogenesis|up-regulation of DA neurogenesis from midbrain floor plate|upregulation of mDA neuron differentiation|upregulation of midbrain DA neurogenesis|activation of midbrain dopaminergic neuron production|up regulation of midbrain dopaminergic neuron differentiation|activation of mDA neuron differentiation|up regulation of mDA neuron differentiation|positive regulation of midbrain dopaminergic neuron production|up regulation of midbrain dopaminergic neuron production|up regulation of DA neurogenesis from midbrain floor plate|activation of midbrain DA neurogenesis|positive regulation of mDA neuron differentiation|activation of DA neurogenesis from midbrain floor plate|upregulation of midbrain dopaminergic neuron differentiation|up-regulation of midbrain DA neurogenesis|positive regulation of midbrain DA neurogenesis|positive regulation of DA neurogenesis from midbrain floor plate|up-regulation of mDA neuron differentiation|activation of midbrain dopaminergic neuron differentiation bf 2016-02-09T12:00:36Z biological_process owl:Class GO:1904956 biolink:NamedThing regulation of midbrain dopaminergic neuron differentiation Any process that modulates the frequency, rate or extent of midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of mDA neuron differentiation|regulation of midbrain DA neurogenesis|regulation of DA neurogenesis from midbrain floor plate|regulation of midbrain dopaminergic neuron production bf 2016-02-09T12:00:21Z biological_process owl:Class GO:0039525 biolink:NamedThing modulation by virus of host chromatin organization Any process in which a virus effects a change in the organization of chromatin in the host. tmpzr1t_l9r_go_relaxed.owl modulation of host chromatin by virus|modulation by virus of host chromatin organisation|regulation by virus of host chromatin organization|modulation of host chromatin structure by virus bf 2011-06-22T05:11:13Z biological_process owl:Class GO:1904971 biolink:NamedThing regulation of viral translation Any process that modulates the frequency, rate or extent of viral translation. tmpzr1t_l9r_go_relaxed.owl regulation of viral protein biosynthetic process|regulation of viral protein formation|regulation of viral protein anabolism|regulation of viral protein biosynthesis|regulation of viral protein synthesis bhm 2016-02-17T15:52:59Z biological_process owl:Class GO:0050792 biolink:NamedThing regulation of viral process Any process that modulates the rate or extent of the viral life cycle, the set of processes by which a virus reproduces and spreads among hosts. tmpzr1t_l9r_go_relaxed.owl regulation of viral reproduction biological_process owl:Class GO:0008807 biolink:NamedThing carboxyvinyl-carboxyphosphonate phosphorylmutase activity Catalysis of the reaction: 1-carboxyvinyl carboxyphosphonate = 3-(hydrohydroxyphosphoryl)pyruvate + CO2. tmpzr1t_l9r_go_relaxed.owl 1-carboxyvinyl carboxyphosphonate phosphorylmutase (decarboxylating)|carboxyphosphonoenolpyruvate phosphonomutase activity|CPEP phosphonomutase activity RHEA:14045|EC:2.7.8.23|MetaCyc:2.7.8.23-RXN molecular_function owl:Class GO:0090183 biolink:NamedThing regulation of kidney development Any process that modulates the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl regulation of nephrogenesis tb 2009-12-18T10:50:56Z biological_process owl:Class GO:0032684 biolink:NamedThing negative regulation of fractalkine production Any process that stops, prevents, or reduces the frequency, rate, or extent of fractalkine production. tmpzr1t_l9r_go_relaxed.owl down-regulation of fractalkine production|negative regulation of fractalkine biosynthetic process|negative regulation of CX3CL1 production|down regulation of fractalkine production|downregulation of fractalkine production|inhibition of fractalkine production|negative regulation of CX3CL1 biosynthesis https://github.com/geneontology/go-ontology/issues/19254 GO:0050753 biological_process owl:Class GO:0032682 biolink:NamedThing negative regulation of chemokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of chemokine production. tmpzr1t_l9r_go_relaxed.owl downregulation of chemokine production|negative regulation of chemokine biosynthetic process|negative regulation of chemokine secretion|down-regulation of chemokine production|down regulation of chemokine production|inhibition of chemokine production 2009-12-18T11:28:00Z GO:0090198|GO:0045079 biological_process owl:Class GO:0070560 biolink:NamedThing protein secretion by platelet The regulated release of proteins by a platelet or group of platelets. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-09T02:38:05Z biological_process owl:Class GO:0009306 biolink:NamedThing protein secretion The controlled release of proteins from a cell. tmpzr1t_l9r_go_relaxed.owl glycoprotein secretion|protein secretion during cell fate commitment|protein secretion resulting in cell fate commitment GO:0045731|GO:0045166 biological_process owl:Class GO:0150033 biolink:NamedThing negative regulation of protein localization to lysosome Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to lysosome. tmpzr1t_l9r_go_relaxed.owl bc 2018-02-06T17:14:16Z biological_process owl:Class GO:0045007 biolink:NamedThing depurination The disruption of the bond between the sugar in the backbone and the A or G base, causing the base to be removed and leaving a depurinated sugar. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Depurination biological_process owl:Class GO:0019690 biolink:NamedThing pyrimidine deoxyribonucleoside interconversion The chemical reactions and pathways by which a pyrimidine deoxyribonucleoside is synthesized from another deoxyribopyrimidine nucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904588 biolink:NamedThing cellular response to glycoprotein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycoprotein stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to glycoproteins sl 2015-08-20T16:46:30Z biological_process owl:Class GO:1904587 biolink:NamedThing response to glycoprotein Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycoprotein stimulus. tmpzr1t_l9r_go_relaxed.owl response to glycoproteins sl 2015-08-20T16:46:24Z biological_process owl:Class GO:0005981 biolink:NamedThing regulation of glycogen catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen. tmpzr1t_l9r_go_relaxed.owl regulation of glycogen breakdown|regulation of glycogen catabolism|regulation of glycogen degradation|regulation of glycogenolysis biological_process owl:Class GO:0032060 biolink:NamedThing bleb assembly The assembly of a bleb, a cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Plasma membrane blebbing occurs during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses. tmpzr1t_l9r_go_relaxed.owl cell blebbing|membrane blebbing|plasma membrane bleb assembly|blebbing|plasma membrane blebbing biological_process owl:Class GO:0038054 biolink:NamedThing G protein-coupled estrogen receptor activity Combining with estrogen and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled estrogen receptor activity bf 2011-11-29T04:29:42Z molecular_function owl:Class GO:0030284 biolink:NamedThing estrogen receptor activity Combining with estrogen and transmitting the signal within the cell to trigger a change in cell activity or function. tmpzr1t_l9r_go_relaxed.owl For estrogen receptors that function within the nucleus to modulate transcription, consider instead annotating to the child terms 'estrogen-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038052' or 'estrogen-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038053'. molecular_function owl:Class GO:1901674 biolink:NamedThing regulation of histone H3-K27 acetylation Any process that modulates the frequency, rate or extent of histone H3-K27 acetylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3 acetylation at K27|regulation of histone H3K27 acetylation vk 2012-11-22T12:06:31Z biological_process owl:Class GO:0002571 biolink:NamedThing somatic diversification of T cell receptor genes by N region addition The addition of variable numbers of random nucleotides by terminal deoxytransferase in the N regions of T cell receptor genes. N regions are found at the V-D, D-D, V-J, and D-J recombinational junctions, depending on the T cell receptor gene. tmpzr1t_l9r_go_relaxed.owl somatic diversification of TCR genes by N region addition biological_process owl:Class GO:0002568 biolink:NamedThing somatic diversification of T cell receptor genes The somatic process that results in the generation of sequence diversity of T cell receptor genes. tmpzr1t_l9r_go_relaxed.owl somatic diversification of TCR genes biological_process owl:Class GO:0070842 biolink:NamedThing aggresome assembly The aggregation, arrangement and bonding together of a set of components to form an aggresome; requires the microtubule cytoskeleton and dynein. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-31T01:30:25Z biological_process owl:Class GO:0070841 biolink:NamedThing inclusion body assembly The aggregation, arrangement and bonding together of a set of components to form an inclusion body. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-31T01:28:14Z biological_process owl:Class GO:0047576 biolink:NamedThing 4-chlorobenzoate dehalogenase activity Catalysis of the reaction: 4-chlorobenzoate + H(2)O = 4-hydroxybenzoate + chloride + H(+). tmpzr1t_l9r_go_relaxed.owl 4-chlorobenzoate chlorohydrolase activity|halobenzoate dehalogenase activity KEGG_REACTION:R01307|EC:3.8.1.6|MetaCyc:4-CHLOROBENZOATE-DEHALOGENASE-RXN|RHEA:23440 molecular_function owl:Class GO:0071647 biolink:NamedThing negative regulation of macrophage inflammatory protein-1 gamma production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of macrophage inflammatory protein-1 gamma. tmpzr1t_l9r_go_relaxed.owl negative regulation of MIP-1g production|negative regulation of CCL9 production|negative regulation of chemokine (C-C motif) ligand 9 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0002207 biolink:NamedThing gene conversion of immunoglobulin genes involved in immune response The somatic process in which immunoglobulin genes are diversified through the mechanism of gene conversion following the induction of and contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl gene conversion of immunoglobulin genes during immune response|gene conversion of antibody genes during immune response biological_process owl:Class GO:0002206 biolink:NamedThing gene conversion of immunoglobulin genes The somatic process in which immunoglobulin genes are diversified through the mechanism of gene conversion. tmpzr1t_l9r_go_relaxed.owl gene conversion of antibody genes biological_process owl:Class GO:0018921 biolink:NamedThing 3-hydroxybenzyl alcohol metabolic process The chemical reactions and pathways involving 3-hydroxybenzyl alcohol, an aromatic compound which is an intermediate in several metabolic pathways, including the biosynthesis of patulin, a toxin and antiviral agent produced by some moulds such as Penicillium patulinum. tmpzr1t_l9r_go_relaxed.owl 3-hydroxybenzyl alcohol metabolism UM-BBD_pathwayID:mcr biological_process owl:Class GO:0045659 biolink:NamedThing negative regulation of neutrophil differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of neutrophil differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of neutrophil differentiation|down regulation of neutrophil differentiation|down-regulation of neutrophil differentiation|downregulation of neutrophil differentiation biological_process owl:Class GO:0030853 biolink:NamedThing negative regulation of granulocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of granulocyte differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of granulocyte differentiation|downregulation of granulocyte differentiation|inhibition of granulocyte differentiation|down regulation of granulocyte differentiation biological_process owl:Class GO:0003851 biolink:NamedThing 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + 2-(2-hydroxyacyl)sphingosine = UDP + 1-(beta-D-galactosyl)-2-(2-hydroxyacyl)sphingosine. tmpzr1t_l9r_go_relaxed.owl cerebroside synthase activity|UDP-galactose:2-(2-hydroxyacyl)sphingosine 1-beta-D-galactosyl-transferase activity|UDPgalactose:2-2-hydroxyacylsphingosine galactosyltransferase activity|uridine diphosphogalactose-2-hydroxyacylsphingosine galactosyltransferase activity|UDPgalactose:ceramide galactosyltransferase activity|UDPgalactose-2-hydroxyacylsphingosine galactosyltransferase activity|UDPgalactose:2-(2-hydroxyacyl)sphingosine 1-beta-D-galactosyl-transferase activity|UDP-galactose-ceramide galactosyltransferase activity EC:2.4.1.47|MetaCyc:2.4.1.45-RXN|RHEA:10856 molecular_function owl:Class GO:1901108 biolink:NamedThing granaticin catabolic process The chemical reactions and pathways resulting in the breakdown of granaticin. tmpzr1t_l9r_go_relaxed.owl granaticin breakdown|granaticin catabolism|granaticin degradation yaf 2012-07-11T02:51:33Z biological_process owl:Class GO:0009754 biolink:NamedThing detection of jasmonic acid stimulus The series of events in which a jasmonic acid stimulus is received by a cell and converted into a molecular signal. Series of events required for a jasmonic acid stimulus to be detected and converted to a signal molecule. tmpzr1t_l9r_go_relaxed.owl perception of jasmonic acid stimulus biological_process owl:Class GO:0032331 biolink:NamedThing negative regulation of chondrocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of chondrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of chondrocyte differentiation|inhibition of chondrocyte differentiation|downregulation of chondrocyte differentiation|down-regulation of chondrocyte differentiation biological_process owl:Class GO:1900175 biolink:NamedThing regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that modulates the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry in the lateral mesoderm. tmpzr1t_l9r_go_relaxed.owl regulation of nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry bf 2012-03-09T10:39:10Z biological_process owl:Class GO:1900336 biolink:NamedThing regulation of methane biosynthetic process from carbon monoxide Any process that modulates the frequency, rate or extent of methane biosynthetic process from carbon monoxide. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:03:15Z biological_process owl:Class GO:0043457 biolink:NamedThing regulation of cellular respiration Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001121 biolink:NamedThing coenzyme gamma-F420-2 biosynthetic process The chemical reactions and pathways resulting in the formation of a coenzyme gamma-F420-2. tmpzr1t_l9r_go_relaxed.owl coenzyme gamma-F420-2 biosynthesis jl 2011-10-11T02:38:14Z biological_process owl:Class GO:1901137 biolink:NamedThing carbohydrate derivative biosynthetic process The chemical reactions and pathways resulting in the formation of carbohydrate derivative. tmpzr1t_l9r_go_relaxed.owl carbohydrate derivative synthesis|carbohydrate derivative anabolism|carbohydrate derivative biosynthesis|carbohydrate derivative formation bf 2012-07-12T04:05:39Z biological_process owl:Class GO:0075010 biolink:NamedThing regulation of germ tube formation Any process that modulates the frequency, rate or extent of germ tube formation on or near host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0009637 biolink:NamedThing response to blue light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. tmpzr1t_l9r_go_relaxed.owl response to blue light stimulus biological_process owl:Class GO:0010893 biolink:NamedThing positive regulation of steroid biosynthetic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046889 biolink:NamedThing positive regulation of lipid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. tmpzr1t_l9r_go_relaxed.owl stimulation of lipid biosynthetic process|positive regulation of lipid biosynthesis|up-regulation of lipid biosynthetic process|activation of lipid biosynthetic process|up regulation of lipid biosynthetic process|upregulation of lipid biosynthetic process|positive regulation of lipid formation|positive regulation of lipid synthesis|positive regulation of lipogenesis|positive regulation of lipid anabolism biological_process owl:Class GO:0034686 biolink:NamedThing integrin alphav-beta8 complex An integrin complex that comprises one alphav subunit and one beta8 subunit. tmpzr1t_l9r_go_relaxed.owl alphav-beta8 integrin complex|ITGAV-ITGB8 complex cellular_component owl:Class GO:0001851 biolink:NamedThing complement component C3b binding Binding to a C3b product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001846 biolink:NamedThing opsonin binding Binding to an opsonin, such as a complement component or antibody, deposited on the surface of a bacteria, virus, immune complex, or other particulate material. tmpzr1t_l9r_go_relaxed.owl Note that an opsonin is a blood serum protein or fragment which when deposited on the surface of a bacteria, virus, immune complex, or other particulate material acts a signal for phagocytosis to cells bearing the appropriate receptors. Not all complement components or fragments and not all antibodies have opsonic properties. molecular_function owl:Class GO:0034395 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to iron Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to an iron stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of specific transcription from RNA polymerase II promoter in response to iron biological_process owl:Class GO:0006357 biolink:NamedThing regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl global transcription regulation from Pol II promoter|regulation of transcription from RNA polymerase II promoter|regulation of global transcription from Pol II promoter|regulation of transcription from Pol II promoter|regulation of gene-specific transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter, global GO:0010551|GO:0006358 biological_process owl:Class GO:0048035 biolink:NamedThing heme O catabolic process The chemical reactions and pathways resulting in the breakdown of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle. tmpzr1t_l9r_go_relaxed.owl heme O breakdown|haem O catabolism|heme O catabolism|haem O catabolic process|heme O degradation biological_process owl:Class GO:0035042 biolink:NamedThing fertilization, exchange of chromosomal proteins Replacement of sperm-specific chromosomal proteins with somatic histones, to allow the paternal genome to acquire a nucleosomal chromatin organization compatible with nuclear activity. tmpzr1t_l9r_go_relaxed.owl sperm-specific histone exchange|sperm-specific histone replacement biological_process owl:Class GO:0032879 biolink:NamedThing regulation of localization Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl regulation of localisation biological_process owl:Class GO:0045953 biolink:NamedThing negative regulation of natural killer cell mediated cytotoxicity Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl negative regulation of NK cell mediated cytotoxicity|negative regulation of NK cell mediated cell killing|down regulation of natural killer cell mediated cytotoxicity|negative regulation of natural killer cell mediated cytolysis|negative regulation of NK cell mediated cell death|downregulation of natural killer cell mediated cytotoxicity|negative regulation of natural killer cell mediated cell death|negative regulation of natural killer cell mediated cell killing|negative regulation of NK cell mediated cytolysis|down-regulation of natural killer cell mediated cytotoxicity|inhibition of natural killer cell mediated cytotoxicity biological_process owl:Class GO:0042269 biolink:NamedThing regulation of natural killer cell mediated cytotoxicity Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell mediated cytolysis|regulation of natural killer cell mediated cell killing|regulation of natural killer cell mediated cell death|regulation of natural killer cell mediated cytolysis|regulation of NK cell mediated cytotoxicity|regulation of NK cell mediated cell killing|regulation of NK cell mediated cell death|regulation of natural killer-cell mediated cytolysis biological_process owl:Class GO:0032449 biolink:NamedThing CBM complex A protein complex comprising Bcl10, MALT1 and a CARD domain-containing protein (CARD9, CARD10 or CARD11); plays a role in signal transduction during NF-kappaB activation. tmpzr1t_l9r_go_relaxed.owl CARMA1-BCL10-Malt1 complex https://github.com/geneontology/go-ontology/issues/21010 cellular_component owl:Class GO:0016445 biolink:NamedThing somatic diversification of immunoglobulins The somatic process that results in the generation of sequence diversity of immunoglobulins. tmpzr1t_l9r_go_relaxed.owl somatic diversification of antibodies biological_process owl:Class GO:0009976 biolink:NamedThing tocopherol cyclase activity Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099032 biolink:NamedThing anchored component of postsynaptic early endosome membrane The component of the postsynaptic early endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098950 biolink:NamedThing intrinsic component of postsynaptic early endosome membrane The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic early endosome membrane cellular_component owl:Class GO:0086028 biolink:NamedThing bundle of His cell to Purkinje myocyte signaling Any process that mediates the transfer of information from a bundle of His cardiomyocyte to a Purkinje myocyte. tmpzr1t_l9r_go_relaxed.owl bundle of His cardiac muscle cell to Purkinje myocyte signaling|bundle of His cardiac muscle cell to Purkinje myocyte signalling tb 2011-11-11T02:02:14Z biological_process owl:Class GO:0086069 biolink:NamedThing bundle of His cell to Purkinje myocyte communication The process that mediates interactions between a bundle of His cell and its surroundings that contributes to the process of the bundle of His cell communicating with a Purkinje myocyte in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl atrioventricular junction myocyte to bundle branch myocyte|bundle of His cardiac muscle cell to Purkinje myocyte communication|ventricular conduction system cell to cell communication|bundle branch myocyte to Purkinje myocyte communication|bundle of His myocyte to atrioventricular junction myocyte https://github.com/geneontology/go-ontology/issues/20731 dph 2011-11-22T09:18:49Z biological_process owl:Class GO:0098702 biolink:NamedThing adenine import across plasma membrane The directed movement of adenine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl adenine import into cell dph 2012-12-06T14:51:42Z GO:0061488 biological_process owl:Class GO:0015853 biolink:NamedThing adenine transport The directed movement of adenine, 6-aminopurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl adenine transmembrane transport biological_process owl:Class GO:0071923 biolink:NamedThing negative regulation of cohesin loading Any process that stops, prevents, or reduces the frequency, rate or extent of a process in which a cohesin complex is transported to, or maintained at, a part of a chromosome that is organized into chromatin. tmpzr1t_l9r_go_relaxed.owl negative regulation of cohesin localisation to chromatin|negative regulation of cohesin localization to chromatin|negative regulation of cohesin association with chromatin mah 2010-09-28T11:17:50Z biological_process owl:Class GO:0071668 biolink:NamedThing plant-type cell wall assembly The aggregation, arrangement and bonding together of a set of components to form a cellulose- and pectin-containing cell wall. tmpzr1t_l9r_go_relaxed.owl plant cell wall assembly mah 2010-02-15T02:19:39Z biological_process owl:Class GO:0009664 biolink:NamedThing plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl plant-type cell wall organisation|cell wall organization and biogenesis|plant-type cell wall organization and biogenesis|cellulose and pectin-containing cell wall organization and biogenesis biological_process owl:Class GO:0030593 biolink:NamedThing neutrophil chemotaxis The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071621 biolink:NamedThing granulocyte chemotaxis The movement of a granulocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T04:08:17Z biological_process owl:Class GO:0140298 biolink:NamedThing endocytic iron import into cell Uptake of iron into a cell via binding to an extracellular receptor, which is internalized by endocytosis. tmpzr1t_l9r_go_relaxed.owl iron import into cell by endocytosis pg 2018-12-10T10:31:31Z biological_process owl:Class GO:0006898 biolink:NamedThing receptor-mediated endocytosis An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles. tmpzr1t_l9r_go_relaxed.owl receptor mediated endocytosis Wikipedia:Receptor-mediated_endocytosis biological_process owl:Class GO:1903581 biolink:NamedThing regulation of basophil degranulation Any process that modulates the frequency, rate or extent of basophil degranulation. tmpzr1t_l9r_go_relaxed.owl sl 2014-10-31T17:37:24Z biological_process owl:Class GO:0032965 biolink:NamedThing regulation of collagen biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl regulation of collagen synthesis|regulation of collagen biosynthesis|regulation of collagen anabolism|regulation of collagen formation biological_process owl:Class GO:2000016 biolink:NamedThing negative regulation of determination of dorsal identity Any process that stops, prevents, or reduces the frequency, rate or extent of determination of dorsal identity. tmpzr1t_l9r_go_relaxed.owl negative regulation of determination of adaxial identity jl 2010-07-15T03:27:55Z biological_process owl:Class GO:0051322 biolink:NamedThing anaphase The cell cycle phase, following metaphase, during which the chromosomes separate and migrate towards the poles of the spindle. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Anaphase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0022403 biolink:NamedThing cell cycle phase One of the distinct periods or stages into which the cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0046208 biolink:NamedThing spermine catabolic process The chemical reactions and pathways resulting in the breakdown of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. tmpzr1t_l9r_go_relaxed.owl spermine breakdown|spermine degradation|spermine catabolism biological_process owl:Class GO:0008215 biolink:NamedThing spermine metabolic process The chemical reactions and pathways involving spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses, which is involved in nucleic acid packaging. Synthesis is regulated by ornithine decarboxylase which plays a key role in control of DNA replication. tmpzr1t_l9r_go_relaxed.owl spermine metabolism biological_process owl:Class GO:0044834 biolink:NamedThing retroviral intasome A tetramer of retroviral integrase subunits tightly associated with a pair of viral DNA ends. Functions to insert viral DNA into a host cell chromosome. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-06T14:33:39Z cellular_component owl:Class GO:0032993 biolink:NamedThing protein-DNA complex A macromolecular complex containing both protein and DNA molecules. tmpzr1t_l9r_go_relaxed.owl DNA-protein complex Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here. cellular_component owl:Class GO:0001918 biolink:NamedThing farnesylated protein binding Binding to a farnesylated protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006449 biolink:NamedThing regulation of translational termination Any process that modulates the frequency, rate or extent of translational termination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043923 biolink:NamedThing positive regulation by host of viral transcription Any process in which a host organism activates or increases the frequency, rate or extent of viral transcription, the synthesis of either RNA on a template of DNA or DNA on a template of RNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of viral transcription by host biological_process owl:Class GO:0000329 biolink:NamedThing fungal-type vacuole membrane The lipid bilayer surrounding a vacuole, the shape of which correlates with cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this structure is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl fungal-type vacuolar membrane|membrane of vacuole with cell cycle-correlated morphology cellular_component owl:Class GO:0098852 biolink:NamedThing lytic vacuole membrane The lipid bilayer surrounding a lytic vacuole and separating its contents from the cytoplasm of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000736 biolink:NamedThing regulation of stem cell differentiation Any process that modulates the frequency, rate or extent of stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:05:16Z biological_process owl:Class GO:2000062 biolink:NamedThing negative regulation of ureter smooth muscle cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of ureter smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T01:44:23Z biological_process owl:Class GO:0051151 biolink:NamedThing negative regulation of smooth muscle cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of smooth muscle cell differentiation|down regulation of smooth muscle cell differentiation|downregulation of smooth muscle cell differentiation|inhibition of smooth muscle cell differentiation biological_process owl:Class GO:0009513 biolink:NamedThing etioplast A plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Etioplast cellular_component owl:Class GO:0009536 biolink:NamedThing plastid Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Plastid cellular_component owl:Class GO:0050197 biolink:NamedThing phytanate-CoA ligase activity Catalysis of the reaction: ATP + CoA + phytanate = AMP + diphosphate + H(+) + phytanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl phytanate:CoA ligase (AMP-forming)|phytanoyl-CoA ligase activity Reactome:R-HSA-389622|MetaCyc:PHYTANATE--COA-LIGASE-RXN|RHEA:21380|KEGG_REACTION:R03631|EC:6.2.1.24 molecular_function owl:Class GO:0007344 biolink:NamedThing pronuclear fusion The merging of two pronuclei in a fertilized egg to fuse and produce a single zygotic genome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000741 biolink:NamedThing karyogamy The creation of a single nucleus from multiple nuclei as a result of fusing the lipid bilayers that surround each nuclei. tmpzr1t_l9r_go_relaxed.owl nuclear fusion during karyogamy|nuclear fusion Wikipedia:Karyogamy GO:0007335 biological_process owl:Class GO:0019405 biolink:NamedThing alditol catabolic process The chemical reactions and pathways resulting in the breakdown of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. tmpzr1t_l9r_go_relaxed.owl alditol degradation|alditol catabolism|alditol breakdown biological_process owl:Class GO:0097365 biolink:NamedThing stretch-activated, cation-selective, calcium channel activity involved in regulation of cardiac muscle cell action potential Enables the transmembrane transfer of a calcium ion by a channel that opens in response to a mechanical stress in the form of stretching, and contributing to the regulation of action potential in a cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-26T02:39:10Z molecular_function owl:Class GO:0015275 biolink:NamedThing stretch-activated, cation-selective, calcium channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens in response to a mechanical stress in the form of stretching. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048269 biolink:NamedThing methionine adenosyltransferase complex A multimeric enzyme complex composed of variable numbers of catalytic alpha subunits, and noncatalytic beta subunits. The beta subunits are believed to have a regulatory function. The enzyme complex catalyzes the synthesis of S-adenosylmethionine (AdoMet), which is the major methyl group donor, participating in the methylation of proteins, DNA, RNA, phospholipids, and other small molecules. tmpzr1t_l9r_go_relaxed.owl MAT complex cellular_component owl:Class GO:0019182 biolink:NamedThing histamine-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a channel that opens when histamine has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005254 biolink:NamedThing chloride channel activity Enables the facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-427570|Reactome:R-HSA-2744349|Reactome:R-HSA-975449|Reactome:R-HSA-975340 molecular_function owl:Class GO:0043379 biolink:NamedThing memory T cell differentiation The process in which a newly activated T cell acquires specialized features of a memory T cell. tmpzr1t_l9r_go_relaxed.owl memory T-lymphocyte differentiation|memory T cell development|memory T-cell differentiation|memory T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0090715 biolink:NamedThing immunological memory formation process Any immunological memory process that can contribute to the formation of immunological memory. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:25:47Z biological_process owl:Class GO:0017003 biolink:NamedThing protein-heme linkage The covalent linkage of heme and a protein. tmpzr1t_l9r_go_relaxed.owl protein-haem linkage biological_process owl:Class GO:0017006 biolink:NamedThing protein-tetrapyrrole linkage The covalent linking of a tetrapyrrole to a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048743 biolink:NamedThing positive regulation of skeletal muscle fiber development Any process that activates, maintains or increases the rate of skeletal muscle fiber development. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast. tmpzr1t_l9r_go_relaxed.owl positive regulation of skeletal myofiber development|stimulation of skeletal muscle fiber development|up-regulation of skeletal muscle fiber development|activation of skeletal muscle fiber development|upregulation of skeletal muscle fiber development|positive regulation of skeletal muscle fibre development|positive regulation of skeletal myofibre development|up regulation of skeletal muscle fiber development biological_process owl:Class GO:0014836 biolink:NamedThing myoblast fate commitment involved in skeletal muscle regeneration The process in which the developmental fate of a satellite cell becomes restricted such that it will develop into a myoblast. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048625 biolink:NamedThing myoblast fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035918 biolink:NamedThing negative regulation of voltage-gated calcium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a voltage-gated calcium channel in another organism. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl negative regulation of voltage-sensitive calcium channel activity in other organism|negative regulation of voltage-dependent calcium channel activity in other organism|downregulation of voltage-gated calcium channel activity in other organism|down-regulation of voltage-gated calcium channel activity in other organism|negative regulation of voltage gated calcium channel activity in other organism|inhibition of voltage-gated calcium channel activity in other organism bf 2011-07-01T11:54:43Z biological_process owl:Class GO:0035917 biolink:NamedThing negative regulation of calcium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a calcium channel in another organism. tmpzr1t_l9r_go_relaxed.owl inhibition of calcium channel activity in other organism|downregulation of calcium channel activity in other organism|down-regulation of calcium channel activity in other organism bf 2011-07-01T11:52:55Z biological_process owl:Class GO:0102787 biolink:NamedThing caffeoyl-CoA:pelargonidin-3-O-beta-D-glucoside-6''-O-acyltransferase activity Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + caffeoyl-CoA = pelargonidin 3-O-beta-D-caffeoylglucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7997 molecular_function owl:Class GO:0033178 biolink:NamedThing proton-transporting two-sector ATPase complex, catalytic domain A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904944 biolink:NamedThing positive regulation of cardiac ventricle formation Any process that activates or increases the frequency, rate or extent of cardiac ventricle formation. tmpzr1t_l9r_go_relaxed.owl up regulation of cardiac ventricle formation|activation of cardiac ventricle formation|upregulation of cardiac ventricle formation|up-regulation of cardiac ventricle formation bc 2016-02-02T16:37:31Z biological_process owl:Class GO:2000176 biolink:NamedThing positive regulation of pro-T cell differentiation Any process that activates or increases the frequency, rate or extent of pro-T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of pro-T lymphocyte differentiation mah 2010-10-11T10:24:35Z biological_process owl:Class GO:0032925 biolink:NamedThing regulation of activin receptor signaling pathway Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of activin signaling pathway|regulation of activin signalling pathway|regulation of activin receptor signalling pathway biological_process owl:Class GO:0042220 biolink:NamedThing response to cocaine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021702 biolink:NamedThing cerebellar Purkinje cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Purkinje cell. Differentiation includes the processes involved in commitment of a neuroblast to a Purkinje cell fate. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000916 biolink:NamedThing negative regulation of glucuronoxylan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of glucuronoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucuronoxylan catabolism tt 2011-07-29T07:54:44Z biological_process owl:Class GO:2001001 biolink:NamedThing negative regulation of xylan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of xylan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of xylan catabolism|negative regulation of xylan degradation|negative regulation of xylan breakdown tt 2011-08-08T03:23:18Z biological_process owl:Class GO:1990580 biolink:NamedThing regulation of cytoplasmic translational termination Any process that modulates the frequency, rate or extent of cytoplasmic translational termination. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-10T15:48:55Z biological_process owl:Class GO:0019048 biolink:NamedThing modulation by virus of host process The process in which a virus effects a change in the structure or processes of its host organism. tmpzr1t_l9r_go_relaxed.owl modulation by virus of host anatomy or process|disruption by virus of host cell|viral interaction with host|virus-host interaction|modulation by virus of host morphology or physiology|host-virus interaction|modulation by virus of host anatomical structure or process|viral-host process|virus-host process https://github.com/geneontology/go-ontology/issues/18605|https://github.com/geneontology/go-ontology/issues/18719 VZ:886 jl 2012-08-01T13:41:00Z GO:0044661|GO:0044792 biological_process owl:Class GO:0090461 biolink:NamedThing glutamate homeostasis Any process involved in the maintenance of an internal steady state of glutamate within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0009785 biolink:NamedThing blue light signaling pathway The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. tmpzr1t_l9r_go_relaxed.owl blue light signalling pathway biological_process owl:Class GO:0030522 biolink:NamedThing intracellular receptor signaling pathway Any series of molecular signals initiated by a ligand binding to an receptor located within a cell. tmpzr1t_l9r_go_relaxed.owl intracellular receptor-mediated signalling pathway|intracellular receptor-mediated signaling pathway|intracellular receptor mediated signaling pathway biological_process owl:Class GO:0043133 biolink:NamedThing hindgut contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the hindgut. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The hindgut is the posterior part of the alimentary canal, including the rectum, and the large intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022600 biolink:NamedThing digestive system process A physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110128 biolink:NamedThing phloem sucrose unloading The process of unloading sucrose that is produced in the source tissues, from the sieve tube or companion cell of the phloem into the sink tissues. tmpzr1t_l9r_go_relaxed.owl kmv 2018-09-07T21:38:52Z biological_process owl:Class GO:0015770 biolink:NamedThing sucrose transport The directed movement of sucrose into, out of or within a cell, or between cells by means of some agent such as a transporter or pore. Sucrose is the disaccharide fructofuranosyl-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097424 biolink:NamedThing nucleolus-associated heterochromatin Dense particles of heterochromatin, consisting of a loosely twisted strand about 600 Angstrom thick, found associated with the nucleolus. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1210952635 pr 2012-11-07T13:43:17Z cellular_component owl:Class GO:0030874 biolink:NamedThing nucleolar chromatin The portion of nuclear chromatin associated with the nucleolus; includes the DNA encoding the ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042366 biolink:NamedThing cobalamin catabolic process The chemical reactions and pathways resulting in the breakdown of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. tmpzr1t_l9r_go_relaxed.owl vitamin B12 catabolism|vitamin B12 catabolic process|cobalamin breakdown|cobalamin degradation|cobalamin catabolism biological_process owl:Class GO:0042365 biolink:NamedThing water-soluble vitamin catabolic process The chemical reactions and pathways resulting in the breakdown of any of a diverse group of vitamins that are soluble in water. tmpzr1t_l9r_go_relaxed.owl water-soluble vitamin breakdown|water-soluble vitamin catabolism|water-soluble vitamin degradation biological_process owl:Class GO:0007098 biolink:NamedThing centrosome cycle The cell cycle process in which centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle. tmpzr1t_l9r_go_relaxed.owl centrosome organisation|centrosome organization and biogenesis|centrosome organization GO:0051297 biological_process owl:Class GO:0006734 biolink:NamedThing NADH metabolic process The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide metabolic process|reduced nicotinamide adenine dinucleotide metabolism|reduced NAD metabolism|NAD (reduced) metabolic process|NAD (reduced) metabolism|NADH metabolism|reduced NAD metabolic process biological_process owl:Class GO:0008152 biolink:NamedThing metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. tmpzr1t_l9r_go_relaxed.owl metabolism resulting in cell growth|single-organism metabolic process|multicellular organism metabolic process|metabolic process resulting in cell growth|metabolism Wikipedia:Metabolism Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. jl 2012-10-17T15:46:40Z GO:0044710|GO:0044236 biological_process owl:Class GO:1902708 biolink:NamedThing response to plumbagin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a plumbagin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2014-02-20T13:49:54Z biological_process owl:Class GO:0071667 biolink:NamedThing DNA/RNA hybrid binding Binding to a RNA/DNA hybrid. tmpzr1t_l9r_go_relaxed.owl RNA/DNA hybrid binding mah 2010-02-15T01:51:44Z molecular_function owl:Class GO:0003676 biolink:NamedThing nucleic acid binding Binding to a nucleic acid. tmpzr1t_l9r_go_relaxed.owl base pairing GO:0000496 molecular_function owl:Class GO:1900881 biolink:NamedThing 18-methylnonadec-1-ene biosynthetic process The chemical reactions and pathways resulting in the formation of 18-methylnonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl 18-methylnonadec-1-ene synthesis|18-methylnonadec-1-ene biosynthesis|18-methylnonadec-1-ene formation|18-methylnonadec-1-ene anabolism tt 2012-06-13T02:26:55Z biological_process owl:Class GO:0043450 biolink:NamedThing alkene biosynthetic process The chemical reactions and pathways resulting in the formation of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. tmpzr1t_l9r_go_relaxed.owl alkene biosynthesis|alkene anabolism|alkene synthesis|alkene formation biological_process owl:Class GO:1905343 biolink:NamedThing regulation of cohesin unloading Any process that modulates the frequency, rate or extent of cohesin unloading. tmpzr1t_l9r_go_relaxed.owl vw 2016-07-29T10:17:50Z biological_process owl:Class GO:0015516 biolink:NamedThing tartrate:succinate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: tartrate(out) + succinate(in) = tartrate(in) + succinate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019216 biolink:NamedThing regulation of lipid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids. tmpzr1t_l9r_go_relaxed.owl regulation of lipid metabolism biological_process owl:Class GO:0062027 biolink:NamedThing positive regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process Any process that starts or increases the rate, frequency or extent of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T14:05:19Z biological_process owl:Class GO:0006553 biolink:NamedThing lysine metabolic process The chemical reactions and pathways involving lysine, 2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl lysine metabolism Wikipedia:Lysine biological_process owl:Class GO:0047884 biolink:NamedThing FAD diphosphatase activity Catalysis of the reaction: FAD + H2O = AMP + FMN. tmpzr1t_l9r_go_relaxed.owl riboflavin adenine dinucleotide pyrophosphatase activity|flavin adenine dinucleotide pyrophosphatase activity|riboflavine adenine dinucleotide pyrophosphatase activity|FAD nucleotidohydrolase activity|FAD pyrophosphatase activity|flavine adenine dinucleotide pyrophosphatase activity|FAD pyrophosphohydrolase activity EC:3.6.1.18|MetaCyc:FAD-PYROPHOSPHATASE-RXN|RHEA:13889 molecular_function owl:Class GO:0004551 biolink:NamedThing nucleotide diphosphatase activity Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides. tmpzr1t_l9r_go_relaxed.owl nucleotide-sugar pyrophosphatase activity|dinucleotide nucleotidohydrolase activity|nucleotide pyrophosphatase activity Reactome:R-HSA-196955|EC:3.6.1.9|MetaCyc:NUCLEOTIDE-PYROPHOSPHATASE-RXN molecular_function owl:Class GO:0100045 biolink:NamedThing negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter Any transcription from RNA polymerase II promoter process that negatively regulates arginine catabolic process. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0006366 biolink:NamedThing transcription by RNA polymerase II The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). tmpzr1t_l9r_go_relaxed.owl transcription from RNA polymerase II promoter|transcription from Pol II promoter|RNA polymerase II transcription factor activity|general transcription from RNA polymerase II promoter|specific transcription from RNA polymerase II promoter|gene-specific transcription from RNA polymerase II promoter https://github.com/geneontology/go-ontology/issues/14854 GO:0032569|GO:0032568 biological_process owl:Class GO:1903645 biolink:NamedThing negative regulation of chaperone-mediated protein folding Any process that stops, prevents or reduces the frequency, rate or extent of chaperone-mediated protein folding. tmpzr1t_l9r_go_relaxed.owl down regulation of chaperone-mediated protein folding|inhibition of chaperone-mediated protein folding|down-regulation of chaperone-mediated protein folding|downregulation of chaperone-mediated protein folding pga 2014-11-21T15:25:35Z biological_process owl:Class GO:1903644 biolink:NamedThing regulation of chaperone-mediated protein folding Any process that modulates the frequency, rate or extent of chaperone-mediated protein folding. tmpzr1t_l9r_go_relaxed.owl pga 2014-11-21T15:25:27Z biological_process owl:Class GO:0014826 biolink:NamedThing vein smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the vein. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The vein is a vessel carrying blood away from the capillary beds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014829 biolink:NamedThing vascular associated smooth muscle contraction A process, occurring in the vascular tissue, whereby actin/myosin complex activity generates force through ATP hydrolysis resulting in a change in smooth muscle geometry. This process is always coupled to chemo-mechanical energy conversion. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle contraction biological_process owl:Class GO:2000810 biolink:NamedThing regulation of bicellular tight junction assembly Any process that modulates the frequency, rate or extent of tight junction assembly. tmpzr1t_l9r_go_relaxed.owl regulation of tight junction formation vk 2011-07-06T01:08:28Z biological_process owl:Class GO:0031023 biolink:NamedThing microtubule organizing center organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow. tmpzr1t_l9r_go_relaxed.owl microtubule organizing center organization and biogenesis|microtubule organising center organisation biological_process owl:Class GO:0043545 biolink:NamedThing molybdopterin cofactor metabolic process The chemical reactions and pathways involving the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl molybdopterin cofactor metabolism|Moco metabolic process|Moco metabolism biological_process owl:Class GO:0051189 biolink:NamedThing prosthetic group metabolic process The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. tmpzr1t_l9r_go_relaxed.owl coenzyme and prosthetic group metabolic process|coenzyme and prosthetic group metabolism|prosthetic group metabolism biological_process owl:Class GO:0008392 biolink:NamedThing arachidonic acid epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to a cis-epoxyeicosatrienoic acid. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2J6|cytochrome P450 CYP2J5 Reactome:R-HSA-211983 molecular_function owl:Class GO:0008391 biolink:NamedThing arachidonic acid monooxygenase activity Catalysis of the incorporation of one atom from molecular oxygen into arachidonic acid and the reduction of the other atom of oxygen to water. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2B19 molecular_function owl:Class GO:1903390 biolink:NamedThing positive regulation of synaptic vesicle uncoating Any process that activates or increases the frequency, rate or extent of synaptic vesicle uncoating. tmpzr1t_l9r_go_relaxed.owl up regulation of synaptic vesicle uncoating|up-regulation of synaptic vesicle coat depolymerization|upregulation of synaptic vesicle coat depolymerization|activation of synaptic vesicle coat protein depolymerization|activation of synaptic vesicle uncoating|positive regulation of synaptic vesicle coat depolymerization|up regulation of synaptic vesicle coat protein depolymerization|upregulation of synaptic vesicle coat protein depolymerization|upregulation of synaptic vesicle uncoating|activation of synaptic vesicle coat depolymerization|positive regulation of synaptic vesicle coat protein depolymerization|up regulation of synaptic vesicle coat depolymerization|up-regulation of synaptic vesicle coat protein depolymerization|up-regulation of synaptic vesicle uncoating pad 2014-08-27T10:03:10Z biological_process owl:Class GO:0052055 biolink:NamedThing modulation by symbiont of host molecular function The process in which an organism effects a change in the function of a host protein via a direct interaction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host molecular function|modification by symbiont of host protein function biological_process owl:Class GO:0005945 biolink:NamedThing 6-phosphofructokinase complex A protein complex that possesses 6-phosphofructokinase activity; homodimeric, homooctameric, and allosteric homotetrameric forms are known. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900301 biolink:NamedThing negative regulation of laminarabiose transport Any process that stops, prevents or reduces the frequency, rate or extent of laminarabiose transport. tmpzr1t_l9r_go_relaxed.owl downregulation of laminarabiose transport|inhibition of laminarabiose transport|down-regulation of laminarabiose transport|down regulation of laminarabiose transport tt 2012-04-05T07:57:28Z biological_process owl:Class GO:1900300 biolink:NamedThing regulation of laminarabiose transport Any process that modulates the frequency, rate or extent of laminarabiose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:57:19Z biological_process owl:Class GO:1902279 biolink:NamedThing positive regulation of pancreatic amylase secretion by cholecystokinin signaling pathway A cholecystokinin signaling pathway that results in positive regulation of pancreatic amylase secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of pancreatic amylase secretion by cholecystokinin signaling pathway|cholecystokinin-mediated pancreatic amylase secretion|up regulation of pancreatic amylase secretion by cholecystokinin signaling pathway|CCK-mediated pancreatic amylase secretion|CCK-induced amylase release in pancreatic cell|activation of pancreatic amylase secretion by cholecystokinin signaling pathway|CCK-stimulated pancreatic amylase release|upregulation of pancreatic amylase secretion by cholecystokinin signaling pathway bf 2013-07-03T16:02:40Z biological_process owl:Class GO:1902278 biolink:NamedThing positive regulation of pancreatic amylase secretion Any process that activates or increases the frequency, rate or extent of pancreatic amylase secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of pancreatic amylase secretion|upregulation of pancreatic amylase secretion|activation of pancreatic amylase secretion|up regulation of pancreatic amylase secretion bf 2013-07-03T12:15:31Z biological_process owl:Class GO:0033042 biolink:NamedThing umami taste receptor activity Combining with soluble umami compounds to initiate a change in cell activity. These receptors are responsible for the sense of umami taste, the savory taste of meats and other foods that are rich in glutamates. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090681 biolink:NamedThing GPCR taste receptor activity A G protein-coupled receptor activity that is responsible for the sense of taste. tmpzr1t_l9r_go_relaxed.owl G-protein coupled taste receptor activity|G-protein-coupled taste receptor activity tb 2016-05-20T15:47:18Z molecular_function owl:Class GO:0048439 biolink:NamedThing flower morphogenesis The process in which the anatomical structures of the flower are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048411 biological_process owl:Class GO:0006116 biolink:NamedThing NADH oxidation A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD. tmpzr1t_l9r_go_relaxed.owl reduced NAD oxidation|NAD (reduced) oxidation|reduced NAD dehydrogenation|NADH dehydrogenation|reduced nicotinamide adenine dinucleotide oxidation|reduced nicotinamide adenine dinucleotide dehydrogenation|NAD (reduced) dehydrogenation biological_process owl:Class GO:0050671 biolink:NamedThing positive regulation of lymphocyte proliferation Any process that activates or increases the rate or extent of lymphocyte proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of lymphocyte proliferation|up-regulation of lymphocyte proliferation|stimulation of lymphocyte proliferation|upregulation of lymphocyte proliferation|activation of lymphocyte proliferation biological_process owl:Class GO:0032946 biolink:NamedThing positive regulation of mononuclear cell proliferation Any process that activates or increases the frequency, rate or extent of mononuclear cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of mononuclear cell proliferation|activation of mononuclear cell proliferation|positive regulation of peripheral blood mononuclear cell proliferation|upregulation of mononuclear cell proliferation|positive regulation of PBMC proliferation|up regulation of mononuclear cell proliferation|stimulation of mononuclear cell proliferation biological_process owl:Class GO:0061706 biolink:NamedThing glycolytic process from sucrose through glucose and fructose The chemical reactions and pathways resulting in the breakdown of sucrose into pyruvate through both glucose and fructose intermediates, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-1042 dph 2015-06-11T13:40:32Z biological_process owl:Class GO:0061615 biolink:NamedThing glycolytic process through fructose-6-phosphate The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH. tmpzr1t_l9r_go_relaxed.owl glycolysis through fructose-6-phosphate MetaCyc:PWY-5484 dph 2014-04-08T10:08:49Z biological_process owl:Class GO:0042016 biolink:NamedThing interleukin-20 receptor activity Combining with interleukin-20 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-20R|IL-20 receptor activity molecular_function owl:Class GO:0004896 biolink:NamedThing cytokine receptor activity Combining with a cytokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl interleukin receptor activity|hematopoietin/interferon-class (D200-domain) cytokine receptor activity|IL receptor GO:0004907 molecular_function owl:Class GO:0007036 biolink:NamedThing vacuolar calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions in the vacuole or between a vacuole and its surroundings. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055074 biolink:NamedThing calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion concentration biological_process owl:Class GO:1901830 biolink:NamedThing zeaxanthin bis(beta-D-glucoside) biosynthetic process The chemical reactions and pathways resulting in the formation of zeaxanthin bis(beta-D-glucoside). tmpzr1t_l9r_go_relaxed.owl zeaxanthin bis(beta-D-glucoside) biosynthesis|zeaxanthin bis(beta-D-glucoside) formation|zeaxanthin bis(beta-D-glucoside) synthesis|zeaxanthin diglucoside formation|zeaxanthin diglucoside anabolism|zeaxanthin bis(beta-D-glucoside) anabolism|zeaxanthin diglucoside synthesis|zeaxanthin diglucoside biosynthesis yaf 2013-01-22T12:32:10Z biological_process owl:Class GO:1901806 biolink:NamedThing beta-glucoside biosynthetic process The chemical reactions and pathways resulting in the formation of beta-glucoside. tmpzr1t_l9r_go_relaxed.owl beta-glucoside biosynthesis|beta-glucoside formation|beta-glucoside synthesis|beta-glucoside anabolism yaf 2013-01-22T10:10:30Z biological_process owl:Class GO:1990314 biolink:NamedThing cellular response to insulin-like growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin-like growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to insulin-like growth factor sl 2014-03-07T19:38:21Z biological_process owl:Class GO:0071375 biolink:NamedThing cellular response to peptide hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals. tmpzr1t_l9r_go_relaxed.owl cellular response to polypeptide hormone stimulus mah 2009-12-11T03:24:18Z biological_process owl:Class GO:0019527 biolink:NamedThing pentitol catabolic process The chemical reactions and pathways resulting in the breakdown of pentitols, any alditol with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentitol breakdown|pentitol catabolism|pentitol degradation biological_process owl:Class GO:0044841 biolink:NamedThing gut granule membrane The membrane of a gut granule, a lysosome-related organelle contained within the intestinal cells of the nematode C. elegans. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-25T12:02:05Z cellular_component owl:Class GO:0031090 biolink:NamedThing organelle membrane A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle. tmpzr1t_l9r_go_relaxed.owl intracellular membrane NIF_Subcellular:sao830981606 cellular_component owl:Class GO:2000122 biolink:NamedThing negative regulation of stomatal complex development Any process that stops, prevents, or reduces the frequency, rate or extent of stomatal complex development. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-27T08:28:26Z biological_process owl:Class GO:2000825 biolink:NamedThing positive regulation of androgen receptor activity Any process that activates or increases the frequency, rate or extent of androgen receptor activity. tmpzr1t_l9r_go_relaxed.owl yaf 2011-07-15T10:56:14Z biological_process owl:Class GO:1904812 biolink:NamedThing rRNA acetylation involved in maturation of SSU-rRNA Any rRNA acetylation that is involved in maturation of SSU-rRNA. tmpzr1t_l9r_go_relaxed.owl rRNA acetylation involved in processing of 20S pre-rRNA|rRNA acetylation involved in SSU-rRNA maturation al 2015-11-11T15:38:41Z biological_process owl:Class GO:1990882 biolink:NamedThing rRNA acetylation The modification of rRNA structure by addition of an acetyl group to rRNA. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl al 2015-10-28T13:24:58Z biological_process owl:Class GO:0031609 biolink:NamedThing cytosolic proteasome core complex, beta-subunit complex The proteasome core subcomplex that constitutes the two inner rings of the cytosolic proteasome core complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019774 biolink:NamedThing proteasome core complex, beta-subunit complex The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905028 biolink:NamedThing negative regulation of membrane depolarization during AV node cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of membrane depolarization during AV node cell action potential. tmpzr1t_l9r_go_relaxed.owl inhibition of membrane depolarization during AV node cell action potential|down regulation of membrane depolarization during AV node cardiac muscle cell action potential|inhibition of membrane depolarization during atrioventricular node cardiac muscle cell action potential|down regulation of membrane depolarization during AV node cell action potential|down-regulation of membrane depolarization during AV node cardiac muscle cell action potential|negative regulation of membrane depolarization during AV node cardiac muscle cell action potential|down regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|down-regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|down-regulation of membrane depolarization during AV node cell action potential|downregulation of membrane depolarization during AV node cardiac muscle cell action potential|negative regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|downregulation of membrane depolarization during AV node cell action potential|inhibition of membrane depolarization during AV node cardiac muscle cell action potential|downregulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential rph 2016-03-04T13:46:15Z biological_process owl:Class GO:1905027 biolink:NamedThing regulation of membrane depolarization during AV node cell action potential Any process that modulates the frequency, rate or extent of membrane depolarization during AV node cell action potential. tmpzr1t_l9r_go_relaxed.owl regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|regulation of membrane depolarization during AV node cardiac muscle cell action potential rph 2016-03-04T13:46:06Z biological_process owl:Class GO:0070425 biolink:NamedThing negative regulation of nucleotide-binding oligomerization domain containing signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing (NOD) pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of NOD signaling pathway|negative regulation of nucleotide-binding oligomerization domain containing signalling pathway biological_process owl:Class GO:1902532 biolink:NamedThing negative regulation of intracellular signal transduction Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. tmpzr1t_l9r_go_relaxed.owl down-regulation of intracellular signal transduction pathway|negative regulation of intracellular signal transduction pathway|negative regulation of intracellular signaling cascade|down regulation of signal transduction via intracellular signaling cascade|downregulation of signal transmission via intracellular cascade|negative regulation of intracellular protein kinase cascade|negative regulation of intracellular signaling pathway|inhibition of intracellular signal transduction|down regulation of intracellular signaling pathway|down regulation of intracellular signaling chain|downregulation of intracellular signaling cascade|down regulation of intracellular signaling cascade|down-regulation of intracellular signal transduction|inhibition of signal transmission via intracellular cascade|down regulation of intracellular signal transduction pathway|down-regulation of signal transduction via intracellular signaling cascade|negative regulation of signal transduction via intracellular signaling cascade|negative regulation of signal transmission via intracellular cascade|down-regulation of intracellular signaling chain|downregulation of intracellular signal transduction pathway|down regulation of intracellular signal transduction|down-regulation of intracellular signaling pathway|down-regulation of intracellular signaling cascade|inhibition of intracellular signaling cascade|inhibition of intracellular signaling chain|inhibition of intracellular signaling pathway|inhibition of signal transduction via intracellular signaling cascade|down regulation of signal transmission via intracellular cascade|negative regulation of intracellular signaling chain|downregulation of signal transduction via intracellular signaling cascade|downregulation of intracellular signaling chain|down-regulation of signal transmission via intracellular cascade|downregulation of intracellular signaling pathway|downregulation of intracellular signal transduction|inhibition of intracellular signal transduction pathway bf 2013-12-02T11:33:01Z GO:0010741 biological_process owl:Class GO:1904355 biolink:NamedThing positive regulation of telomere capping Any process that activates or increases the frequency, rate or extent of telomere capping. tmpzr1t_l9r_go_relaxed.owl activation of telomere end protection|activation of telomere capping|positive regulation of telomere end protection|up-regulation of telomere capping|upregulation of telomere end protection|up-regulation of telomere end protection|upregulation of telomere capping|up regulation of telomere capping|up regulation of telomere end protection nc 2015-06-12T16:51:20Z biological_process owl:Class GO:1904353 biolink:NamedThing regulation of telomere capping Any process that modulates the frequency, rate or extent of telomere capping. tmpzr1t_l9r_go_relaxed.owl regulation of telomere end protection nc 2015-06-12T16:51:08Z biological_process owl:Class GO:2000556 biolink:NamedThing positive regulation of T-helper 1 cell cytokine production Any process that activates or increases the frequency, rate or extent of T-helper 1 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th1 cell cytokine production ebc 2011-04-03T07:35:56Z biological_process owl:Class GO:0032415 biolink:NamedThing regulation of sodium:proton antiporter activity Any process that modulates the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl regulation of sodium:hydrogen antiporter activity biological_process owl:Class GO:0010155 biolink:NamedThing regulation of proton transport Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010825 biolink:NamedThing positive regulation of centrosome duplication Any process that increases the frequency, rate or extent of centrosome duplication. Centrosome duplication is the replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990042 biolink:NamedThing glycerol dehydrogenase [NAD(P)+] activity Catalysis of an oxidation-reduction (redox) reaction in which glycerol is converted into glycerone and NAD+ or NADP is reduced. tmpzr1t_l9r_go_relaxed.owl glycerol dehydrogenase activity, NAD or NADP as acceptor rb 2013-02-14T00:34:45Z molecular_function owl:Class GO:0050977 biolink:NamedThing magnetoreception by sensory perception of chemical stimulus The series of events required for an organism to receive a chemical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. It is believed that organisms such as birds and salamanders use a 'chemical compass': chemical reactions that involve transitions between different spin states can be influenced by magnetic fields and by detecting the different product ratios, these organisms can perceive the direction of the magnetic field. The mechanism by which this is detected is not certain but it may also involve light stimuli. tmpzr1t_l9r_go_relaxed.owl magnetoreception, sensory perception of chemical stimulus|magnetoreception by chemical stimulus|magnetoreception through chemical stimulus|magnetoreception, using chemical stimulus biological_process owl:Class GO:0007606 biolink:NamedThing sensory perception of chemical stimulus The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl chemosensory perception biological_process owl:Class GO:0006530 biolink:NamedThing asparagine catabolic process The chemical reactions and pathways resulting in the breakdown of asparagine, 2-amino-3-carbamoylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl asparagine breakdown|asparagine degradation|asparagine catabolism biological_process owl:Class GO:0010733 biolink:NamedThing positive regulation of protein glutathionylation Any process that increases the rate, frequency, or extent of protein glutathionylation. Protein glutathionylation is the protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein amino acid glutathionylation biological_process owl:Class GO:0031401 biolink:NamedThing positive regulation of protein modification process Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. tmpzr1t_l9r_go_relaxed.owl activation of protein modification|upregulation of protein modification|up-regulation of protein modification|up regulation of protein modification|stimulation of protein modification biological_process owl:Class GO:0039707 biolink:NamedThing pore formation by virus in membrane of host cell The aggregation, arrangement and bonding together of a set of components by a virus to form a pore complex in a membrane of a host organism. tmpzr1t_l9r_go_relaxed.owl pore formation in membrane of host cell by virus|viroporin bf 2013-11-25T15:33:33Z biological_process owl:Class GO:1902395 biolink:NamedThing regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity Any process that modulates the frequency, rate or extent of 1-deoxy-D-xylulose-5-phosphate synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase (decarboxylating)|regulation of 1-deoxyxylulose-5-phosphate synthase activity|regulation of DXP-synthase activity|regulation of DOXP synthase activity|regulation of 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) activity tb 2013-09-11T21:12:25Z biological_process owl:Class GO:0019674 biolink:NamedThing NAD metabolic process The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. tmpzr1t_l9r_go_relaxed.owl oxidized nicotinamide adenine dinucleotide metabolic process|oxidized NAD metabolism|NAD (oxidized) metabolism|nicotinamide adenine dinucleotide metabolic process|NAD phosphorylation and dephosphorylation|oxidized NAD metabolic process|nicotinamide adenine dinucleotide metabolism|oxidized nicotinamide adenine dinucleotide metabolism|NAD (oxidized) metabolic process|NAD metabolism biological_process owl:Class GO:0005034 biolink:NamedThing osmosensor activity Sensing extracellular osmolarity to initiate a change in cell activity, and spanning the membrane of the cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032530 biolink:NamedThing regulation of microvillus organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a microvillus. tmpzr1t_l9r_go_relaxed.owl regulation of microvillus organization and biogenesis|regulation of microvillus organisation biological_process owl:Class GO:0120035 biolink:NamedThing regulation of plasma membrane bounded cell projection organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of plasma membrane bounded cell projections. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-26T16:02:06Z biological_process owl:Class GO:1900470 biolink:NamedThing positive regulation of phosphatidylserine biosynthetic process Any process that activates or increases the frequency, rate or extent of phosphatidylserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of phosphatidylserine biosynthesis|up-regulation of phosphatidylserine anabolism|positive regulation of phosphatidylserine biosynthesis|up-regulation of phosphatidylserine biosynthesis|up-regulation of phosphatidylserine synthesis|activation of phosphatidylserine biosynthesis|activation of phosphatidylserine synthesis|upregulation of phosphatidylserine anabolism|up regulation of phosphatidylserine formation|activation of phosphatidylserine biosynthetic process|upregulation of phosphatidylserine biosynthesis|positive regulation of phosphatidylserine synthesis|up regulation of phosphatidylserine anabolism|up regulation of phosphatidylserine biosynthetic process|up-regulation of phosphatidylserine formation|up-regulation of phosphatidylserine biosynthetic process|up regulation of phosphatidylserine synthesis|activation of phosphatidylserine formation|positive regulation of phosphatidylserine anabolism|positive regulation of phosphatidylserine formation|upregulation of phosphatidylserine synthesis|activation of phosphatidylserine anabolism|upregulation of phosphatidylserine biosynthetic process|upregulation of phosphatidylserine formation dgf 2012-05-01T08:01:19Z biological_process owl:Class GO:1900468 biolink:NamedThing regulation of phosphatidylserine biosynthetic process Any process that modulates the frequency, rate or extent of phosphatidylserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidylserine biosynthesis|regulation of phosphatidylserine synthesis|regulation of phosphatidylserine anabolism|regulation of phosphatidylserine formation dgf 2012-05-01T08:01:01Z biological_process owl:Class GO:0032075 biolink:NamedThing positive regulation of nuclease activity Any process that activates or increases the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids. tmpzr1t_l9r_go_relaxed.owl up-regulation of nuclease activity|stimulation of nuclease activity|activation of nuclease activity|upregulation of nuclease activity|up regulation of nuclease activity|nuclease activator biological_process owl:Class GO:0009956 biolink:NamedThing radial pattern formation The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur. tmpzr1t_l9r_go_relaxed.owl radial pattern specification biological_process owl:Class GO:0009635 biolink:NamedThing response to herbicide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants. tmpzr1t_l9r_go_relaxed.owl herbicide susceptibility/resistance biological_process owl:Class GO:1905570 biolink:NamedThing positive regulation of ferrichrome biosynthetic process Any process that activates or increases the frequency, rate or extent of ferrichrome biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of ferrichrome biosynthesis|upregulation of ferrichrome biosynthesis|up-regulation of ferrichrome biosynthetic process, peptide modification|up-regulation of ferrichrome biosynthetic process, peptide formation|activation of ferrichrome synthesis|activation of ferrichrome formation|up regulation of ferrichrome biosynthetic process, peptide formation|up-regulation of ferrichrome formation|activation of ferrichrome biosynthetic process, peptide formation|up regulation of ferrichrome anabolism|upregulation of ferrichrome biosynthetic process, peptide modification|up regulation of ferrichrome biosynthetic process, peptide modification|up-regulation of ferrichrome biosynthesis|positive regulation of ferrichrome biosynthesis|up regulation of ferrichrome formation|positive regulation of ferrichrome anabolism|up regulation of ferrichrome biosynthetic process|upregulation of ferrichrome synthesis|positive regulation of ferrichrome formation|activation of ferrichrome biosynthesis|upregulation of ferrichrome biosynthetic process, peptide formation|up-regulation of ferrichrome biosynthetic process|up-regulation of ferrichrome anabolism|positive regulation of ferrichrome synthesis|positive regulation of ferrichrome biosynthetic process, peptide modification|up-regulation of ferrichrome synthesis|upregulation of ferrichrome formation|up regulation of ferrichrome synthesis|upregulation of ferrichrome anabolism|activation of ferrichrome biosynthetic process, peptide modification|upregulation of ferrichrome biosynthetic process|activation of ferrichrome biosynthetic process|activation of ferrichrome anabolism|positive regulation of ferrichrome biosynthetic process, peptide formation pr 2016-10-18T14:49:16Z biological_process owl:Class GO:1900706 biolink:NamedThing positive regulation of siderophore biosynthetic process Any process that activates or increases the frequency, rate or extent of siderophore biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of siderophore biosynthesis|up regulation of siderophore anabolism|upregulation of siderophore synthesis|activation of siderochrome biosynthesis|activation of siderophore biosynthetic process|up-regulation of siderochrome biosynthetic process|activation of siderophore anabolism|upregulation of siderochrome biosynthesis|up-regulation of siderophore biosynthetic process, peptide modification|upregulation of siderochrome biosynthetic process|up regulation of siderophore formation|up-regulation of siderochrome biosynthesis|activation of siderophore synthesis|up-regulation of siderophore biosynthetic process|up-regulation of siderophore anabolism|up-regulation of siderophore biosynthetic process, peptide formation|positive regulation of siderochrome biosynthesis|positive regulation of siderophore anabolism|positive regulation of siderophore biosynthetic process, peptide formation|upregulation of siderophore biosynthetic process|upregulation of siderophore biosynthetic process, peptide modification|upregulation of siderophore biosynthesis|up regulation of siderophore biosynthetic process, peptide formation|upregulation of siderophore anabolism|positive regulation of siderophore synthesis|activation of siderophore biosynthetic process, peptide modification|upregulation of siderophore formation|up regulation of siderochrome biosynthesis|activation of siderophore biosynthetic process, peptide formation|positive regulation of siderophore formation|upregulation of siderophore biosynthetic process, peptide formation|activation of siderophore formation|up regulation of siderophore biosynthetic process|positive regulation of siderophore biosynthetic process, peptide modification|activation of siderophore biosynthesis|up regulation of siderophore biosynthesis|up regulation of siderophore synthesis|up regulation of siderophore biosynthetic process, peptide modification|positive regulation of siderophore biosynthesis|activation of siderochrome biosynthetic process|up-regulation of siderophore synthesis|up-regulation of siderophore formation|positive regulation of siderochrome biosynthetic process|up regulation of siderochrome biosynthetic process di 2012-05-22T05:00:00Z biological_process owl:Class GO:0050538 biolink:NamedThing N-carbamoyl-L-amino-acid hydrolase activity Catalysis of the reaction: N-carbamoyl-L-2-amino acid + H2O = L-2-amino acid + NH3 + CO2. The N-carbamoyl-L-2-amino acid is a 2-ureido carboxylate. tmpzr1t_l9r_go_relaxed.owl L-carbamoylase activity|N-carbamoyl-L-amino acid amidohydrolase activity RHEA:17581|MetaCyc:3.5.1.87-RXN|EC:3.5.1.87 molecular_function owl:Class GO:1901926 biolink:NamedThing cadinene metabolic process The chemical reactions and pathways involving cadinene. tmpzr1t_l9r_go_relaxed.owl cadinene metabolism ms 2013-02-18T14:54:22Z biological_process owl:Class GO:0051761 biolink:NamedThing sesquiterpene metabolic process The chemical reactions and pathways involving sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene. tmpzr1t_l9r_go_relaxed.owl sesquiterpene metabolism biological_process owl:Class GO:0044267 biolink:NamedThing cellular protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. tmpzr1t_l9r_go_relaxed.owl cellular protein metabolism biological_process owl:Class GO:0061868 biolink:NamedThing hepatic stellate cell migration The orderly movement of a hepatic stellate cell from one site to another. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:01:40Z biological_process owl:Class GO:0010761 biolink:NamedThing fibroblast migration Cell migration that is accomplished by extension and retraction of a fibroblast pseudopodium. A fibroblast is a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl fibroblast cell migration biological_process owl:Class GO:0097643 biolink:NamedThing amylin receptor activity Combining with amylin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-08T15:34:16Z molecular_function owl:Class GO:0097642 biolink:NamedThing calcitonin family receptor activity Combining with any member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-08T15:32:19Z molecular_function owl:Class GO:0018879 biolink:NamedThing biphenyl metabolic process The chemical reactions and pathways involving biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs). tmpzr1t_l9r_go_relaxed.owl xenene metabolism|biphenyl metabolism|xenene metabolic process UM-BBD_pathwayID:bph biological_process owl:Class GO:0062103 biolink:NamedThing double-stranded RNA biosynthetic process The chemical reactions and pathways resulting in the formation of double-stranded RNA. tmpzr1t_l9r_go_relaxed.owl double-stranded RNA biosynthesis|dsRNA biosynthetic process|dsRNA biosynthesis dph 2019-01-07T13:29:47Z biological_process owl:Class GO:0097517 biolink:NamedThing contractile actin filament bundle An actin filament bundle in which the filaments are loosely packed (approximately 30-60 nm apart) and arranged with opposing polarities; the loose packing allows myosin (usually myosin-II) to enter the bundle. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:41:14Z cellular_component owl:Class GO:0032432 biolink:NamedThing actin filament bundle An assembly of actin filaments that are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. tmpzr1t_l9r_go_relaxed.owl actin cable GO:0030482|GO:0000141 cellular_component owl:Class GO:0022873 biolink:NamedThing protein-N(PI)-phosphohistidine-maltose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + maltose(out) = protein histidine + maltose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl maltose PTS transporter activity molecular_function owl:Class GO:0008982 biolink:NamedThing protein-N(PI)-phosphohistidine-sugar phosphotransferase activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sugar(out) = protein histidine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl sucrose phosphotransferase system II|protein-Npi-phospho-L-histidine:sugar N-pros-phosphotransferase activity|group translocator activity|PEP-dependent phosphotransferase enzyme II|protein-Npi-phosphohistidine-sugar phosphotransferase activity|protein-Npi-phospho-L-histidine:sugar Npi-phosphotransferase activity|gene glC proteins|phosphotransferase, phosphohistidinoprotein-hexose activity|enzyme IIl4ac|PTS transporter|protein-Np-phosphohistidine-sugar phosphotransferase activity|protein, specific or class, gene bglC|phosphohistidinoprotein-hexose phosphotransferase activity|phosphohistidinoprotein-hexose phosphoribosyltransferase activity|phosphotransfer-driven group translocator|PTS permease activity|phosphoenolpyruvate-sugar phosphotransferase enzyme II|PEP--sugar phosphotransferase enzyme II activity|ribonucleic acid formation factor, gene glC|phosphoprotein factor-hexose phosophotransferase activity|protein-Npi-phosphohistidine:sugar N-pros-phosphotransferase activity|enzyme II of the phosphotransferase system|gene bglC RNA formation factors MetaCyc:2.7.1.69-RXN|EC:2.7.1.69 GO:0015455|GO:0015456 molecular_function owl:Class GO:1900196 biolink:NamedThing regulation of penicillin biosynthetic process Any process that modulates the frequency, rate or extent of penicillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of penicillin anabolism|regulation of penicillin biosynthesis|regulation of penicillin formation|regulation of penicillin synthesis di 2012-03-20T03:56:33Z biological_process owl:Class GO:0032268 biolink:NamedThing regulation of cellular protein metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl regulation of cellular protein metabolism biological_process owl:Class GO:0097040 biolink:NamedThing phthiocerol biosynthetic process The chemical reactions and pathways resulting in the formation of phthiocerol, a lipid-based 1,3-glycol consisting of (3S,4R)-3-methoxy-4-methylnonacosane having (9R)- and (11S)-hydroxy substituents. tmpzr1t_l9r_go_relaxed.owl phthiocerol formation|phthiocerol synthesis|phthiocerol biosynthesis|phthiocerol anabolism pr 2011-04-15T01:18:17Z biological_process owl:Class GO:0042845 biolink:NamedThing glycol biosynthetic process The chemical reactions and pathways resulting in the formation of glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent. tmpzr1t_l9r_go_relaxed.owl glycol anabolism|glycol formation|glycol biosynthesis|glycol synthesis|dihydric alcohol biosynthesis|dihydric alcohol biosynthetic process biological_process owl:Class GO:0001660 biolink:NamedThing fever generation The heat generation process that results in a rise in body temperature above the normal, often as a response to infection. tmpzr1t_l9r_go_relaxed.owl pyrexia Wikipedia:Fever biological_process owl:Class GO:0006953 biolink:NamedThing acute-phase response An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097656 biolink:NamedThing cell-cell self recognition A cell-cell recognition process by which a cell distinguishes between self and non self during cooperative behavior, such as early development. tmpzr1t_l9r_go_relaxed.owl kin recognition|kin discrimination|self recognition Examples are the membrane proteins TgrB1 and TgrC1 in the social amoeba Dictyostelium discoideum. pr 2014-09-24T20:58:35Z biological_process owl:Class GO:0071376 biolink:NamedThing cellular response to corticotropin-releasing hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticotropin-releasing hormone stimulus. Corticotropin-releasing hormone is a peptide hormone involved in the stress response. tmpzr1t_l9r_go_relaxed.owl cellular response to corticotropin-releasing factor stimulus|cellular response to CRF stimulus|cellular response to corticoliberin stimulus|cellular response to CRH stimulus mah 2009-12-11T03:24:56Z biological_process owl:Class GO:0043435 biolink:NamedThing response to corticotropin-releasing hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticotropin-releasing hormone stimulus. Corticotropin-releasing hormone is a peptide hormone involved in the stress response. tmpzr1t_l9r_go_relaxed.owl response to CRF stimulus|response to corticoliberin stimulus|response to CRH stimulus|response to corticotropin-releasing hormone stimulus|response to corticotropin-releasing factor stimulus biological_process owl:Class GO:0140346 biolink:NamedThing phosphatidylserine flippase activity Catalysis of the movement of phosphatidylserine from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine flippase activity (exoplasmic to cytosolic leaftlet) pg 2019-05-16T13:44:23Z molecular_function owl:Class GO:0015247 biolink:NamedThing aminophospholipid flippase activity Enables the transfer of aminophospholipids from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. Aminophospholipids contain phosphoric acid as a mono- or diester and an amino (NH2) group. tmpzr1t_l9r_go_relaxed.owl aminophospholipid transmembrane transporter activity|aminophospholipid transporter activity molecular_function owl:Class GO:0048330 biolink:NamedThing positive regulation of axial mesodermal cell fate specification Any process that activates or increases the frequency, rate or extent of axial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl up-regulation of axial mesodermal cell fate specification|activation of axial mesodermal cell fate specification|stimulation of axial mesodermal cell fate specification|upregulation of axial mesodermal cell fate specification|up regulation of axial mesodermal cell fate specification biological_process owl:Class GO:0048337 biolink:NamedThing positive regulation of mesodermal cell fate specification Any process that activates or increases the frequency, rate or extent of mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl up regulation of mesodermal cell fate specification|stimulation of mesodermal cell fate specification|upregulation of mesodermal cell fate specification|activation of mesodermal cell fate specification|up-regulation of mesodermal cell fate specification biological_process owl:Class GO:0032542 biolink:NamedThing sulfiredoxin activity Catalysis of the reaction: peroxiredoxin-(S-hydroxy-S-oxocysteine) + ATP + 2 R-SH = peroxiredoxin-(S-hydroxycysteine) + ADP + phosphate + R-S-S-R. tmpzr1t_l9r_go_relaxed.owl Srx1|peroxiredoxin-(S-hydroxy-S-oxocysteine) reductase activity|peroxiredoxin-(S-hydroxy-S-oxocysteine):thiol oxidoreductase [ATP-hydrolysing; peroxiredoxin-(S-hydroxycysteine)-forming]|sulphiredoxin activity RHEA:17545|MetaCyc:1.8.98.2-RXN|EC:1.8.98.2 molecular_function owl:Class GO:0016209 biolink:NamedThing antioxidant activity Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0089709 biolink:NamedThing L-histidine transmembrane transport The directed movement of L-histidine across a membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000784 biolink:NamedThing positive regulation of establishment of cell polarity regulating cell shape Any process that activates or increases the frequency, rate or extent of establishment of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-23T12:17:48Z biological_process owl:Class GO:2000782 biolink:NamedThing regulation of establishment of cell polarity regulating cell shape Any process that modulates the frequency, rate or extent of establishment of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-23T12:17:38Z biological_process owl:Class GO:0051127 biolink:NamedThing positive regulation of actin nucleation Any process that activates or increases the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. tmpzr1t_l9r_go_relaxed.owl up-regulation of actin nucleation|up regulation of actin nucleation|activation of actin nucleation|stimulation of actin nucleation|upregulation of actin nucleation biological_process owl:Class GO:0051125 biolink:NamedThing regulation of actin nucleation Any process that modulates the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004408 biolink:NamedThing holocytochrome-c synthase activity Catalysis of the reaction: holocytochrome c = apocytochrome c + heme. tmpzr1t_l9r_go_relaxed.owl cytochrome c heme-lyase activity|holocytochrome-c apocytochrome-c-lyase activity|cytochrome c synthase activity|holocytochrome c synthetase activity|holocytochrome-c apocytochrome-c-lyase (heme-forming) EC:4.4.1.17|MetaCyc:HOLOCYTOCHROME-C-SYNTHASE-RXN|RHEA:22648 molecular_function owl:Class GO:0016846 biolink:NamedThing carbon-sulfur lyase activity Catalysis of the elimination of hydrogen sulfide or substituted H2S. tmpzr1t_l9r_go_relaxed.owl carbon-sulphur lyase activity Reactome:R-HSA-1614567|EC:4.4.-.- molecular_function owl:Class GO:0044211 biolink:NamedThing CTP salvage Any process which produces cytidine 5'-triphosphate (CTP) from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl CTP biosynthetic process via salvage pathway|cytidine 5'-triphosphate salvage jl 2009-10-22T03:24:04Z biological_process owl:Class GO:0006241 biolink:NamedThing CTP biosynthetic process The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl CTP anabolism|CTP synthesis|CTP biosynthesis|CTP formation biological_process owl:Class GO:0046016 biolink:NamedThing positive regulation of transcription by glucose Any process involving glucose that activates or increases the rate of transcription. tmpzr1t_l9r_go_relaxed.owl activation of transcription by glucose|stimulation of transcription by glucose|upregulation of transcription by glucose|up regulation of transcription by glucose|up-regulation of transcription by glucose biological_process owl:Class GO:0045991 biolink:NamedThing carbon catabolite activation of transcription A transcription regulation process in which the presence of one carbon source leads to an increase in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription by carbon catabolites biological_process owl:Class GO:2000964 biolink:NamedThing negative regulation of cellooligosaccharide catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellooligosaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellooligosaccharide catabolism tt 2011-08-01T02:28:42Z biological_process owl:Class GO:2000961 biolink:NamedThing negative regulation of cellooligosaccharide metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellooligosaccharide metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellooligosaccharide metabolism tt 2011-08-01T02:25:59Z biological_process owl:Class GO:1903125 biolink:NamedThing negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation A peptidyl-threonine phosphorylation that results in negative regulation of thioredoxin peroxidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of TrxPx activity by peptidyl-threonine phosphorylation|negative regulation of thiol peroxidase activity by peptidyl-threonine phosphorylation|negative regulation of TPx activity by peptidyl-threonine phosphorylation bf 2014-06-24T08:47:25Z biological_process owl:Class GO:0018107 biolink:NamedThing peptidyl-threonine phosphorylation The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0038 biological_process owl:Class GO:0061545 biolink:NamedThing tyramine secretion The regulated release of a tyramine by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-25T09:14:07Z biological_process owl:Class GO:0061531 biolink:NamedThing primary amine secretion The regulated release of a primary amine by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:56:08Z biological_process owl:Class GO:0035707 biolink:NamedThing T-helper 2 cell chemotaxis The directed movement of a T-helper 2 cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl Th2 cell chemotaxis bf 2011-03-02T02:37:44Z biological_process owl:Class GO:0010818 biolink:NamedThing T cell chemotaxis The directed movement of a T cell in response to an external stimulus. A T cell is a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. tmpzr1t_l9r_go_relaxed.owl T-cell chemotaxis biological_process owl:Class GO:1901192 biolink:NamedThing positive regulation of formation of translation initiation ternary complex Any process that activates or increases the frequency, rate or extent of formation of translation initiation ternary complex. tmpzr1t_l9r_go_relaxed.owl up regulation of translation initiation ternary complex assembly|activation of formation of translation initiation ternary complex|up regulation of formation of translation initiation ternary complex|up-regulation of translation initiation ternary complex assembly|upregulation of translation initiation ternary complex assembly|up-regulation of formation of translation initiation ternary complex|activation of translation initiation ternary complex assembly|positive regulation of translation initiation ternary complex assembly|upregulation of formation of translation initiation ternary complex ss 2012-07-25T02:27:29Z biological_process owl:Class GO:1905752 biolink:NamedThing regulation of argininosuccinate synthase activity Any process that modulates the frequency, rate or extent of argininosuccinate synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of argininosuccinic acid synthetase activity|regulation of arginine succinate synthetase activity|regulation of citrulline--aspartate ligase activity|regulation of L-citrulline:L-aspartate ligase (AMP-forming)|regulation of arginosuccinate synthetase activity|regulation of argininosuccinate synthetase activity dos 2016-12-12T11:43:52Z biological_process owl:Class GO:0016216 biolink:NamedThing isopenicillin-N synthase activity Catalysis of the reaction: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O(2) = 2 H(2)O + isopenicillin N. tmpzr1t_l9r_go_relaxed.owl isopenicillin-N synthetase activity|N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine:oxygen oxidoreductase (cyclizing)|isopenicillin N synthase activity EC:1.21.3.1|RHEA:22428|MetaCyc:1.21.3.1-RXN|KEGG_REACTION:R04872 molecular_function owl:Class GO:0090265 biolink:NamedThing positive regulation of immune complex clearance by monocytes and macrophages Any process that increases the rate, frequency, or extent of the process of immune complex clearance by monocytes or macrophages. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-04T04:32:18Z biological_process owl:Class GO:1903921 biolink:NamedThing regulation of protein processing in phagocytic vesicle Any process that modulates the frequency, rate or extent of protein processing in phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl regulation of protein maturation by peptide bond cleavage in phagosome|regulation of peptidolysis during protein maturation in phagocytic vesicle|regulation of protein processing in phagosome|regulation of protein maturation by peptide bond hydrolysis in phagosome|regulation of protein maturation by proteolysis in phagosome|regulation of peptidolysis during protein maturation in phagosome|regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|regulation of protein maturation by proteolysis in phagocytic vesicle als 2015-02-10T11:16:54Z biological_process owl:Class GO:0070613 biolink:NamedThing regulation of protein processing Any process that modulates the frequency, rate or extent of protein processing, a protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. tmpzr1t_l9r_go_relaxed.owl regulation of protein maturation by peptide bond cleavage mah 2009-04-29T02:49:14Z GO:0010953 biological_process owl:Class GO:0052837 biolink:NamedThing thiazole biosynthetic process The chemical reactions and pathways resulting in the formation of a thiazole, a five-membered heterocyclic ring structure containing a sulfur in the 1-position and a nitrogen in the 3-position. tmpzr1t_l9r_go_relaxed.owl thiazole anabolism|thiazole synthesis|thiazole biosynthesis|thiazole formation ai 2011-11-29T03:33:05Z biological_process owl:Class GO:0032199 biolink:NamedThing reverse transcription involved in RNA-mediated transposition The synthesis of DNA from an RNA transposon intermediate. tmpzr1t_l9r_go_relaxed.owl reverse transcription during retrotransposition biological_process owl:Class GO:0001171 biolink:NamedThing reverse transcription A DNA synthesis process that uses RNA as the initial template for synthesis of DNA, but which also includes an RNase activity to remove the RNA strand of an RNA-DNA heteroduplex produced by the RNA-dependent synthesis step and use of the initial DNA strand as a template for DNA synthesis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Reverse_transcription krc 2011-03-14T03:51:08Z biological_process owl:Class GO:0071946 biolink:NamedThing cis-acting DNA replication termination A DNA replication termination process that is initiated by protein binding to a binding site on the same chromosome, but remote from the termination site, via DNA looping or chromosome kissing. tmpzr1t_l9r_go_relaxed.owl cis acting DNA replication termination mah 2010-10-06T01:08:48Z biological_process owl:Class GO:1905088 biolink:NamedThing positive regulation of synaptonemal complex assembly Any process that activates or increases the frequency, rate or extent of synaptonemal complex assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of synaptonemal complex formation|up regulation of synaptonemal complex formation|up regulation of synaptonemal complex assembly|upregulation of synaptonemal complex formation|activation of synaptonemal complex assembly|up-regulation of synaptonemal complex formation|upregulation of synaptonemal complex assembly|up-regulation of synaptonemal complex assembly|activation of synaptonemal complex formation mec 2016-03-30T08:39:03Z biological_process owl:Class GO:0051709 biolink:NamedThing regulation of killing of cells of other organism Any process that modulates the frequency, rate or extent of the killing by an organism of cells in another organism. tmpzr1t_l9r_go_relaxed.owl modulation of programmed cell death in other organism|modulation of programmed cell death in other organism involved in symbiotic interaction|regulation of killing of cells of another organism|modulation by organism of apoptotic process in other organism involved in symbiotic interaction https://github.com/geneontology/go-ontology/issues/20287 jl 2012-03-20T04:48:41Z GO:0044531|GO:0052459|GO:0052248|GO:0052433 biological_process owl:Class GO:0031341 biolink:NamedThing regulation of cell killing Any process that modulates the frequency, rate or extent of cell killing, the process in which a cell brings about the death of another cell, either in the same or a different organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015739 biolink:NamedThing sialic acid transport The directed movement of sialic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090170 biolink:NamedThing regulation of Golgi inheritance Any process that modulates the rate, frequency or extent of Golgi inheritance. Golgi inheritance is the partitioning of Golgi apparatus between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-11T10:21:59Z biological_process owl:Class GO:0051176 biolink:NamedThing positive regulation of sulfur metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur. tmpzr1t_l9r_go_relaxed.owl up regulation of sulfur metabolic process|positive regulation of sulphur metabolism|upregulation of sulfur metabolic process|positive regulation of sulphur metabolic process|stimulation of sulfur metabolic process|activation of sulfur metabolic process|up-regulation of sulfur metabolic process|positive regulation of sulfur metabolism biological_process owl:Class GO:0046184 biolink:NamedThing aldehyde biosynthetic process The chemical reactions and pathways resulting in the formation of aldehydes, any organic compound with the formula R-CH=O. tmpzr1t_l9r_go_relaxed.owl aldehyde biosynthesis|aldehyde synthesis|aldehyde formation|aldehyde anabolism biological_process owl:Class GO:0098680 biolink:NamedThing template-free RNA nucleotidyltransferase Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the addition of a terminal nucleotide to an RNA molecule in the absence of a nucleic acid template. tmpzr1t_l9r_go_relaxed.owl dos 2017-01-31T15:51:56Z molecular_function owl:Class GO:2000720 biolink:NamedThing positive regulation of maintenance of mitotic sister chromatid cohesion, centromeric Any process that activates or increases the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl positive regulation of maintenance of centromeric mitotic sister chromatin cohesion|positive regulation of maintenance of mitotic sister chromatin cohesion at centromere|positive regulation of maintenance of sister chromatin cohesion at centromere at mitosis mah 2011-06-03T10:41:16Z biological_process owl:Class GO:2000718 biolink:NamedThing regulation of maintenance of mitotic sister chromatid cohesion, centromeric Any process that modulates the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of mitotic sister chromatin cohesion at centromere|regulation of maintenance of centromeric mitotic sister chromatin cohesion|regulation of maintenance of sister chromatin cohesion at centromere at mitosis mah 2011-06-03T10:41:11Z biological_process owl:Class GO:0021601 biolink:NamedThing abducens nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the abducens nerve to attain its fully functional state. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye. tmpzr1t_l9r_go_relaxed.owl CN VI maturation biological_process owl:Class GO:0021605 biolink:NamedThing cranial nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for a cranial nerve to attain its fully functional state. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034323 biolink:NamedThing O-butanoyltransferase activity Catalysis of the transfer of a butyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034326 biolink:NamedThing butanoyltransferase activity Catalysis of the transfer of a butanoyl (CH3-[CH2]2-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033266 biolink:NamedThing ABC-type choline transporter activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of choline across a membrane. tmpzr1t_l9r_go_relaxed.owl choline-transporting ATPase activity|ABC-type choline transmembrane transporter activity|ATPase-coupled choline transmembrane transporter activity|ATP-dependent choline transmembrane transporter activity molecular_function owl:Class GO:0015220 biolink:NamedThing choline transmembrane transporter activity Enables the transfer of choline from one side of a membrane to the other. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl amino acid/choline transmembrane transporter activity|choline permease activity Reactome:R-HSA-5658483|Reactome:R-HSA-6797956|Reactome:R-HSA-444433|Reactome:R-HSA-429594 GO:0005306 molecular_function owl:Class GO:2000390 biolink:NamedThing negative regulation of neutrophil extravasation Any process that stops, prevents or reduces the frequency, rate or extent of neutrophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T11:08:23Z biological_process owl:Class GO:0042062 biolink:NamedThing long-term strengthening of neuromuscular junction Any process that results in an increase in the efficacy of transmission at a neuromuscular synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050806 biolink:NamedThing positive regulation of synaptic transmission Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. tmpzr1t_l9r_go_relaxed.owl up-regulation of synaptic transmission|activation of synaptic transmission|stimulation of synaptic transmission|up regulation of synaptic transmission|upregulation of synaptic transmission biological_process owl:Class GO:1904508 biolink:NamedThing regulation of protein localization to basolateral plasma membrane Any process that modulates the frequency, rate or extent of protein localization to basolateral plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in basolateral plasma membrane|regulation of protein localisation to basolateral plasma membrane|regulation of protein localisation in basolateral plasma membrane kmv 2015-07-24T17:56:26Z biological_process owl:Class GO:1904375 biolink:NamedThing regulation of protein localization to cell periphery Any process that modulates the frequency, rate or extent of protein localization to cell periphery. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-22T22:09:25Z biological_process owl:Class GO:0051257 biolink:NamedThing meiotic spindle midzone assembly The formation of the spindle midzone, the area in the center of the spindle where the spindle microtubules from opposite poles overlap, as a part of the process of meiosis. tmpzr1t_l9r_go_relaxed.owl spindle midzone biosynthesis involved in meiosis|spindle midzone assembly involved in meiosis|meiotic spindle midzone formation|spindle midzone formation involved in meiosis|meiotic spindle midzone biosynthesis|meiotic spindle midzone biogenesis|spindle midzone biogenesis involved in meiosis biological_process owl:Class GO:0052707 biolink:NamedThing N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine The pathway resulting in the formation of N-alpha,N-alpha,N-alpha-trimethyl-L-histidine from histidine. Histidine undergoes three methylations by a histidine-alpha-N-methyltransferase (EC:2.1.1.44) to form N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (also known as hercynine or histidine betaine). tmpzr1t_l9r_go_relaxed.owl hercynine biosynthesis from histidine|histidine catabolism to hercynine|histidine catabolic process to hercynine|histidine betaine biosynthesis from histidine|histidine catabolism to N-alpha,N-alpha,N-alpha-trimethyl-L-histidine KEGG_REACTION:R01169 ai 2011-08-05T02:07:24Z biological_process owl:Class GO:0006548 biolink:NamedThing histidine catabolic process The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine catabolism|histidine breakdown|histidine degradation biological_process owl:Class GO:0002193 biolink:NamedThing MAML1-RBP-Jkappa- ICN1 complex A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-1 (MAML1); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML1-RBP-Jkappa-Notch1 complex|MAML1-CSL-Notch1 complex|MAML1-CSL-ICN1 hjd 2011-08-11T04:08:18Z cellular_component owl:Class GO:0140604 biolink:NamedThing mycofactocin biosynthetic process The chemical reactions and pathways resulting in the formation of the coenzyme mycofactocin, a variably glycosylated small molecule electron pair carrier derived from the C-terminal valine-tyrosine dipeptide of the ribosomally translated precursor peptide MftA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20547 pg 2021-02-16T07:42:51Z biological_process owl:Class GO:0033617 biolink:NamedThing mitochondrial cytochrome c oxidase assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrial cytochrome c oxidase complex assembly|mitochondrial cytochrome c oxidase biogenesis|mitochondrial respiratory chain complex IV assembly biological_process owl:Class GO:1903522 biolink:NamedThing regulation of blood circulation Any process that modulates the frequency, rate or extent of blood circulation. tmpzr1t_l9r_go_relaxed.owl regulation of hemolymph circulation mr 2014-10-06T18:38:56Z biological_process owl:Class GO:0015700 biolink:NamedThing arsenite transport The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015698 biolink:NamedThing inorganic anion transport The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904114 biolink:NamedThing positive regulation of muscle filament sliding Any process that activates or increases the frequency, rate or extent of muscle filament sliding. tmpzr1t_l9r_go_relaxed.owl up regulation of muscle filament sliding|activation of muscle filament sliding|up-regulation of muscle filament sliding|upregulation of muscle filament sliding kmv 2015-04-03T18:40:44Z biological_process owl:Class GO:1903116 biolink:NamedThing positive regulation of actin filament-based movement Any process that activates or increases the frequency, rate or extent of actin filament-based movement. tmpzr1t_l9r_go_relaxed.owl activation of actin filament-based movement|upregulation of actin filament-based movement|up regulation of actin filament-based movement|up-regulation of actin filament-based movement al 2014-06-12T16:56:04Z biological_process owl:Class GO:0018258 biolink:NamedThing protein O-linked glycosylation via hydroxyproline The glycosylation of proteins via 04 atom of hydroxyproline to form O4-glycosyl-L-hydroxyproline; the most common form is arabinofuranosyl-4-proline. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation via hydroxyproline RESID:AA0212 biological_process owl:Class GO:0018208 biolink:NamedThing peptidyl-proline modification The modification of peptidyl-proline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090341 biolink:NamedThing negative regulation of secretion of lysosomal enzymes Any process that decreases the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:35:57Z biological_process owl:Class GO:0050709 biolink:NamedThing negative regulation of protein secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of a protein from a cell. tmpzr1t_l9r_go_relaxed.owl downregulation of protein secretion|down regulation of protein secretion|inhibition of protein secretion|down-regulation of protein secretion biological_process owl:Class GO:1905564 biolink:NamedThing positive regulation of vascular endothelial cell proliferation Any process that activates or increases the frequency, rate or extent of vascular endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl activation of vascular endothelial cell proliferation|up regulation of vascular endothelial cell proliferation|up-regulation of vascular endothelial cell proliferation|upregulation of vascular endothelial cell proliferation nc 2016-10-17T09:24:35Z biological_process owl:Class GO:1905562 biolink:NamedThing regulation of vascular endothelial cell proliferation Any process that modulates the frequency, rate or extent of vascular endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl nc 2016-10-17T09:24:17Z biological_process owl:Class GO:0099088 biolink:NamedThing axonal transport of messenger ribonucleoprotein complex The directed movement of a messenger ribonucleoprotein complex along microtubules in axons. tmpzr1t_l9r_go_relaxed.owl axonal transport of mRNA RNP complex biological_process owl:Class GO:0001765 biolink:NamedThing membrane raft assembly The aggregation, arrangement and bonding together of a set of components to form a membrane raft, a small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalizes cellular processes. tmpzr1t_l9r_go_relaxed.owl membrane raft formation|lipid raft formation|lipid raft assembly biological_process owl:Class GO:0031579 biolink:NamedThing membrane raft organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. tmpzr1t_l9r_go_relaxed.owl lipid raft organization|membrane raft organisation|membrane raft organization and biogenesis biological_process owl:Class GO:0050924 biolink:NamedThing positive regulation of negative chemotaxis Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl stimulation of negative chemotaxis|up-regulation of negative chemotaxis|up regulation of negative chemotaxis|upregulation of negative chemotaxis|activation of negative chemotaxis biological_process owl:Class GO:0015144 biolink:NamedThing carbohydrate transmembrane transporter activity Enables the transfer of carbohydrate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl sugar transporter|carbohydrate transporter activity GO:1901476 molecular_function owl:Class GO:0018762 biolink:NamedThing aliphatic nitrilase activity Catalysis of the reaction: R-CN + H2O = R-COOH + NH3. tmpzr1t_l9r_go_relaxed.owl aliphatic nitrile aminohydrolase activity UM-BBD_reactionID:r0622|EC:3.5.5.7|RHEA:46188|MetaCyc:3.5.5.7-RXN molecular_function owl:Class GO:1902208 biolink:NamedThing regulation of bacterial-type flagellum assembly Any process that modulates the frequency, rate or extent of bacterial-type flagellum assembly. tmpzr1t_l9r_go_relaxed.owl regulation of bacterial flagellum assembly jl 2013-06-11T14:20:19Z biological_process owl:Class GO:0033438 biolink:NamedThing ACC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an ACC codon. tmpzr1t_l9r_go_relaxed.owl threonine tRNA Note that in the standard genetic code, ACC codes for threonine. molecular_function owl:Class GO:0006524 biolink:NamedThing alanine catabolic process The chemical reactions and pathways resulting in the breakdown of alanine, 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl alanine breakdown|alanine degradation|alanine catabolism biological_process owl:Class GO:0120290 biolink:NamedThing stalled replication fork localization to nuclear periphery A cellular localization process where a DNA replication fork that has stalled is signaled to relocate and anchor to the nuclear periphery for the time necessary to complete recombination-dependent replication. tmpzr1t_l9r_go_relaxed.owl stalled replication fork localization to nuclear periphery involved in replication fork processing https://github.com/geneontology/go-ontology/issues/20443 krc 2020-11-23T20:25:43Z biological_process owl:Class GO:0021611 biolink:NamedThing facial nerve formation The process that gives rise to the facial nerve. This process pertains to the initial formation of a structure from unspecified parts. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl CN VII formation|CN VII biosynthesis biological_process owl:Class GO:0021603 biolink:NamedThing cranial nerve formation The process that gives rise to the cranial nerves. This process pertains to the initial formation of a structure from unspecified parts. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071792 biolink:NamedThing bacillithiol metabolic process The chemical reactions and pathways involving bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species. tmpzr1t_l9r_go_relaxed.owl bacillithiol metabolism mah 2010-09-02T11:13:47Z biological_process owl:Class GO:0046228 biolink:NamedThing 2,4,5-trichlorophenoxyacetic acid catabolic process The chemical reactions and pathways resulting in the breakdown of 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound widely used as a herbicide. tmpzr1t_l9r_go_relaxed.owl 2,4,5-trichlorophenoxyacetic acid degradation|2,4,5-trichlorophenoxyacetic acid catabolism|2,4,5-trichlorophenoxyacetic acid breakdown biological_process owl:Class GO:0018980 biolink:NamedThing 2,4,5-trichlorophenoxyacetic acid metabolic process The chemical reactions and pathways involving 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound which is widely used as a herbicide, often as a weed killer for home lawns. tmpzr1t_l9r_go_relaxed.owl 2,4,5-T metabolic process|2,4,5-trichlorophenoxyacetic acid metabolism|2,4,5-T metabolism UM-BBD_pathwayID:2,4,5-t biological_process owl:Class GO:1903327 biolink:NamedThing negative regulation of tRNA metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of tRNA metabolism|downregulation of tRNA metabolic process|negative regulation of tRNA metabolism|inhibition of tRNA metabolic process|down regulation of tRNA metabolic process|down-regulation of tRNA metabolic process|downregulation of tRNA metabolism|down regulation of tRNA metabolism|down-regulation of tRNA metabolism vw 2014-08-18T13:08:58Z biological_process owl:Class GO:0046286 biolink:NamedThing flavonoid phytoalexin catabolic process The chemical reactions and pathways resulting in the breakdown of flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl flavonoid phytoalexin breakdown|flavonoid phytoalexin catabolism|flavonoid phytoalexin degradation biological_process owl:Class GO:0046275 biolink:NamedThing flavonoid catabolic process The chemical reactions and pathways resulting in the breakdown of flavonoids, a group of phenolic derivatives containing a flavan skeleton. tmpzr1t_l9r_go_relaxed.owl flavonoid catabolism|flavonoid degradation|flavonoid breakdown biological_process owl:Class GO:0015031 biolink:NamedThing protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl enzyme transport GO:0015831 biological_process owl:Class GO:0042878 biolink:NamedThing D-glucarate transmembrane transporter activity Enables the transfer of D-glucarate, the D-enantiomer of glucarate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005310 biolink:NamedThing dicarboxylic acid transmembrane transporter activity Enables the transfer of dicarboxylic acids from one side of a membrane to the other. A dicarboxylic acid is an organic acid with two COOH groups. tmpzr1t_l9r_go_relaxed.owl dicarboxylic acid permease activity|dicarboxylate carrier|dicarboxylate (succinate/fumarate/malate) antiporter activity|sodium:dicarboxylate/tricarboxylate symporter activity Reactome:R-HSA-372843|Reactome:R-HSA-1614546 GO:0005312|GO:0015365 molecular_function owl:Class GO:0051871 biolink:NamedThing dihydrofolic acid binding Binding to dihydrofolic acid, a folic acid in which the bicyclic pteridine structure is in the dihydro, partially reduced form; they are intermediates in folate metabolism and are reduced to their tetrahydro, reduced forms. tmpzr1t_l9r_go_relaxed.owl dihydrofolate binding|DHF binding molecular_function owl:Class GO:1901363 biolink:NamedThing heterocyclic compound binding Binding to heterocyclic compound. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-14T13:53:50Z molecular_function owl:Class GO:1905577 biolink:NamedThing ganglioside GP1c binding Binding to ganglioside GP1c. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T11:17:25Z molecular_function owl:Class GO:0035594 biolink:NamedThing ganglioside binding Binding to a ganglioside, a ceramide oligosaccharide carrying in addition to other sugar residues, one or more sialic acid residues. tmpzr1t_l9r_go_relaxed.owl bf 2010-11-11T02:11:38Z molecular_function owl:Class GO:1905148 biolink:NamedThing negative regulation of smooth muscle hypertrophy Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl down regulation of smooth muscle hypertrophy|inhibition of smooth muscle hypertrophy|downregulation of smooth muscle hypertrophy|down-regulation of smooth muscle hypertrophy bc 2016-04-15T12:47:16Z biological_process owl:Class GO:0014745 biolink:NamedThing negative regulation of muscle adaptation Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl negative regulation of muscle plasticity biological_process owl:Class GO:0004813 biolink:NamedThing alanine-tRNA ligase activity Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). tmpzr1t_l9r_go_relaxed.owl alanine-transfer RNA ligase activity|AlaRS|alanine tRNA synthetase activity|alanyl-transfer ribonucleic acid synthetase activity|alanyl-tRNA synthetase activity|alanyl-transfer ribonucleate synthetase activity|alanyl-transfer RNA synthetase activity|Ala-tRNA synthetase activity|alanine translase activity|alanine transfer RNA synthetase activity|L-alanine:tRNAAla ligase (AMP-forming)|alanyl-transfer ribonucleate synthase activity Reactome:R-HSA-380177|MetaCyc:ALANINE--TRNA-LIGASE-RXN|RHEA:12540|Reactome:R-HSA-379864|EC:6.1.1.7 molecular_function owl:Class GO:1902511 biolink:NamedThing negative regulation of apoptotic DNA fragmentation Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic DNA fragmentation. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA fragmentation involved in apoptotic nuclear change|downregulation of DNA catabolism during apoptosis|inhibition of DNA catabolism during apoptosis|negative regulation of endonucleolytic DNA catabolic process involved in apoptosis|down regulation of apoptotic DNA fragmentation|negative regulation of DNA fragmentation involved in apoptotic nuclear change|inhibition of apoptotic DNA fragmentation|down regulation of DNA catabolism during apoptosis|down-regulation of DNA catabolism during apoptosis|down-regulation of DNA catabolic process during apoptosis|down regulation of endonucleolytic DNA catabolic process involved in apoptosis|inhibition of DNA catabolic process during apoptosis|downregulation of DNA fragmentation involved in apoptotic nuclear change|downregulation of DNA catabolic process during apoptosis|down regulation of DNA fragmentation involved in apoptotic nuclear change|inhibition of endonucleolytic DNA catabolic process involved in apoptosis|down-regulation of endonucleolytic DNA catabolic process involved in apoptosis|downregulation of endonucleolytic DNA catabolic process involved in apoptosis|down regulation of DNA catabolic process during apoptosis|negative regulation of DNA catabolism during apoptosis|downregulation of apoptotic DNA fragmentation|down-regulation of apoptotic DNA fragmentation|negative regulation of DNA catabolic process during apoptosis|down-regulation of DNA fragmentation involved in apoptotic nuclear change hjd 2013-11-15T18:28:41Z biological_process owl:Class GO:1902344 biolink:NamedThing negative regulation of maltose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltose transport. tmpzr1t_l9r_go_relaxed.owl inhibition of maltose transport|downregulation of maltose transport|down regulation of maltose transport|down-regulation of maltose transport dph 2013-08-01T17:16:26Z biological_process owl:Class GO:0097590 biolink:NamedThing archaeal-type flagellum-dependent cell motility Cell motility due to the motion of one or more archaeal-type flagella. An archaeal-type flagellum (also called archaellum) is a non-membrane-bounded organelle superficially similar to a bacterial-type flagellum, but having a different molecular structure and lacking a central channel. tmpzr1t_l9r_go_relaxed.owl archaeal-type flagellar cell motility pr 2014-03-25T20:40:50Z biological_process owl:Class GO:0097588 biolink:NamedThing archaeal or bacterial-type flagellum-dependent cell motility Cell motility due to movement of bacterial- or archaeal-type flagella. tmpzr1t_l9r_go_relaxed.owl Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella. pr 2014-03-25T16:51:19Z biological_process owl:Class GO:2000552 biolink:NamedThing negative regulation of T-helper 2 cell cytokine production Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 2 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl negative regulation of Th2 cell cytokine production ebc 2011-04-03T07:32:54Z biological_process owl:Class GO:1903941 biolink:NamedThing negative regulation of respiratory gaseous exchange Any process that stops, prevents or reduces the frequency, rate or extent of respiratory gaseous exchange. tmpzr1t_l9r_go_relaxed.owl down regulation of respiratory gaseous exchange|down-regulation of respiratory gaseous exchange|inhibition of respiratory gaseous exchange|downregulation of respiratory gaseous exchange sl 2015-02-17T20:26:24Z biological_process owl:Class GO:2000669 biolink:NamedThing negative regulation of dendritic cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of dendritic cell apoptosis pr 2011-05-09T07:34:21Z biological_process owl:Class GO:1905278 biolink:NamedThing positive regulation of epithelial tube formation Any process that activates or increases the frequency, rate or extent of epithelial tube formation. tmpzr1t_l9r_go_relaxed.owl up regulation of epithelial tube formation|activation of epithelial tube formation|up-regulation of epithelial tube formation|upregulation of epithelial tube formation An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-06-20T09:35:57Z biological_process owl:Class GO:0004966 biolink:NamedThing galanin receptor activity Combining with galanin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008188 biolink:NamedThing neuropeptide receptor activity Combining with a neuropeptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018880 biolink:NamedThing 4-chlorobiphenyl metabolic process The chemical reactions and pathways involving 4-chlorobiphenyl, a member of the polychlorinated biphenyl (PCB) group of compounds, a very stable group of synthetic organic compounds composed of a biphenyl nucleus with 1-10 chlorine substituents. 4-chlorobiphenyl has been used as a model substrate to investigate PCB degradation. tmpzr1t_l9r_go_relaxed.owl 4-chlorobiphenyl metabolism UM-BBD_pathwayID:cbp biological_process owl:Class GO:0042196 biolink:NamedThing chlorinated hydrocarbon metabolic process The chemical reactions and pathways involving chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms. tmpzr1t_l9r_go_relaxed.owl chlorinated hydrocarbon metabolism biological_process owl:Class GO:0097636 biolink:NamedThing intrinsic component of autophagosome membrane The component of the autophagosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic component of autophagic vacuole membrane|intrinsic to autophagic vacuole membrane cellular_component owl:Class GO:0061413 biolink:NamedThing regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source A transcription regulation process in which the presence of a nonfermentable carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T11:13:06Z biological_process owl:Class GO:0031314 biolink:NamedThing extrinsic component of mitochondrial inner membrane The component of mitochondrial inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to mitochondrial inner membrane cellular_component owl:Class GO:0031312 biolink:NamedThing extrinsic component of organelle membrane The component of an organelle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to organelle membrane cellular_component owl:Class GO:0034406 biolink:NamedThing cell wall beta-glucan metabolic process The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall beta-glucan metabolism biological_process owl:Class GO:0002615 biolink:NamedThing positive regulation of monocyte antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of monocyte antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl upregulation of monocyte antigen processing and presentation|up regulation of monocyte antigen processing and presentation|stimulation of monocyte antigen processing and presentation|activation of monocyte antigen processing and presentation|up-regulation of monocyte antigen processing and presentation biological_process owl:Class GO:0002613 biolink:NamedThing regulation of monocyte antigen processing and presentation Any process that modulates the frequency, rate, or extent of monocyte antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043620 biolink:NamedThing regulation of DNA-templated transcription in response to stress Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl regulation of DNA-dependent transcription in response to stress biological_process owl:Class GO:0042189 biolink:NamedThing vanillin biosynthetic process The chemical reactions and pathways resulting in the formation of vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods. tmpzr1t_l9r_go_relaxed.owl vanillin synthesis|vanillic aldehyde biosynthesis|vanillic aldehyde biosynthetic process|vanillin anabolism|vanillin formation|vanillin biosynthesis biological_process owl:Class GO:0018982 biolink:NamedThing vanillin metabolic process The chemical reactions and pathways involving vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods and can be obtained as a by-product of the pulp and paper industry by the oxidative breakdown of lignin. tmpzr1t_l9r_go_relaxed.owl vanillic aldehyde metabolic process|vanillic aldehyde metabolism|vanillin metabolism UM-BBD_pathwayID:van biological_process owl:Class GO:1904407 biolink:NamedThing positive regulation of nitric oxide metabolic process Any process that activates or increases the frequency, rate or extent of nitric oxide metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of nitric oxide metabolic process|upregulation of nitric oxide metabolic process|up regulation of nitric oxide metabolism|up-regulation of nitric oxide metabolic process|upregulation of nitric oxide metabolism|positive regulation of nitric oxide metabolism|up regulation of nitric oxide metabolic process|up-regulation of nitric oxide metabolism|activation of nitric oxide metabolism sl 2015-06-24T20:56:47Z biological_process owl:Class GO:0110067 biolink:NamedThing ammonium transmembrane transporter complex High affinity ammonium transporter complex that enables the transfer of ammonium from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl AMT1 complex kmv 2017-11-20T15:21:10Z cellular_component owl:Class GO:1902495 biolink:NamedThing transmembrane transporter complex A transmembrane protein complex which enables the transfer of a substance from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-13T16:23:04Z cellular_component owl:Class GO:0002256 biolink:NamedThing regulation of kinin cascade Any process that modulates the frequency, rate, or extent of the kinin cascade. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002673 biolink:NamedThing regulation of acute inflammatory response Any process that modulates the frequency, rate, or extent of an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042130 biolink:NamedThing negative regulation of T cell proliferation Any process that stops, prevents or reduces the rate or extent of T cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of T cell proliferation|negative regulation of T lymphocyte proliferation|negative regulation of T-lymphocyte proliferation|downregulation of T cell proliferation|down-regulation of T cell proliferation|down regulation of T cell proliferation|negative regulation of T-cell proliferation biological_process owl:Class GO:0050672 biolink:NamedThing negative regulation of lymphocyte proliferation Any process that stops, prevents or reduces the rate or extent of lymphocyte proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphocyte proliferation|inhibition of lymphocyte proliferation|down-regulation of lymphocyte proliferation|down regulation of lymphocyte proliferation biological_process owl:Class GO:0042367 biolink:NamedThing biotin catabolic process The chemical reactions and pathways resulting in the breakdown of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. tmpzr1t_l9r_go_relaxed.owl vitamin B7 catabolic process|vitamin H catabolic process|biotin breakdown|biotin catabolism|vitamin B7 catabolism|biotin degradation|vitamin H catabolism biological_process owl:Class GO:0003046 biolink:NamedThing regulation of systemic arterial blood pressure by stress relaxation The intrinsic circulatory process resulting from stress relaxation that modulates the force with which blood travels through the systemic arterial circulatory system. Stress relaxation is the adaptation of vessels to a new size as a result of changes in pressure in storage areas such as veins, the liver, the spleen, and the lungs. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by stress relaxation biological_process owl:Class GO:0003085 biolink:NamedThing negative regulation of systemic arterial blood pressure The process that reduces the force with which blood travels through the systemic arterial circulatory system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010757 biolink:NamedThing negative regulation of plasminogen activation Any process that decreases the rate, frequency or extent of plasminogen activation. Plasminogen activation is the process in which plasminogen is processed to plasmin. tmpzr1t_l9r_go_relaxed.owl inhibition of plasminogen activation biological_process owl:Class GO:0061541 biolink:NamedThing rhabdomere morphogenesis The process in which the anatomical structures of a rhabdomere are generated and organized. The rhabdomere is the organelle on the apical surface of a photoreceptor cell that contains the visual pigments. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-24T07:59:25Z biological_process owl:Class GO:0048812 biolink:NamedThing neuron projection morphogenesis The process in which the anatomical structures of a neuron projection are generated and organized. A neuron projection is any process extending from a neural cell, such as axons or dendrites. tmpzr1t_l9r_go_relaxed.owl neurite formation|neurite growth|neurite biosynthesis|neurite morphogenesis biological_process owl:Class GO:0002408 biolink:NamedThing myeloid dendritic cell chemotaxis The movement of a myeloid dendritic cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097529 biolink:NamedThing myeloid leukocyte migration The movement of a myeloid leukocyte within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-11T13:59:43Z biological_process owl:Class GO:1905439 biolink:NamedThing response to chondroitin 6'-sulfate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chondroitin 6'-sulfate stimulus. tmpzr1t_l9r_go_relaxed.owl cvs 2016-09-14T18:56:12Z biological_process owl:Class GO:0031440 biolink:NamedThing regulation of mRNA 3'-end processing Any process that modulates the frequency, rate or extent of mRNA 3'-end processing, any process involved in forming the mature 3' end of an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061402 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to acidic pH Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter in response to acidity dph 2012-01-10T03:06:32Z biological_process owl:Class GO:0060632 biolink:NamedThing regulation of microtubule-based movement Any process that modulates the rate, frequency, or extent of microtubule-based movement, the movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T03:07:02Z biological_process owl:Class GO:0022809 biolink:NamedThing mobile ion carrier activity Small molecule produced by bacteria that carries an ion across the membrane by enclosing the ion and travelling with the ion across the membrane. It does not form a fully open pore across the membrane. tmpzr1t_l9r_go_relaxed.owl ionophore molecular_function owl:Class GO:0022857 biolink:NamedThing transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl uptake permease activity|substrate-specific transporter activity|substrate-specific transmembrane transporter activity|uptake transmembrane transporter activity Reactome:R-HSA-1236947|Reactome:R-HSA-6784434|Reactome:R-HSA-5638209|Reactome:R-HSA-429036|Reactome:R-HSA-5671707|Reactome:R-HSA-6784436 GO:0015646|GO:0022892|GO:0005386|GO:0022891|GO:0015563 molecular_function owl:Class GO:0009073 biolink:NamedThing aromatic amino acid family biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). tmpzr1t_l9r_go_relaxed.owl aromatic amino acid family biosynthetic process, shikimate pathway|aromatic amino acid family biosynthesis|aromatic amino acid family formation|aromatic amino acid family anabolism|aromatic amino acid family synthesis MetaCyc:COMPLETE-ARO-PWY GO:0016089 biological_process owl:Class GO:0014861 biolink:NamedThing regulation of skeletal muscle contraction via regulation of action potential Any process that modulates the frequency, rate or extent of skeletal muscle contraction by depolarization of muscle membrane and ionic fluxes. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal muscle contraction via membrane action potential biological_process owl:Class GO:0006956 biolink:NamedThing complement activation Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway. tmpzr1t_l9r_go_relaxed.owl complement cascade|complement activity|complement response biological_process owl:Class GO:0002253 biolink:NamedThing activation of immune response Any process that initiates an immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901282 biolink:NamedThing fructoselysine biosynthetic process The chemical reactions and pathways resulting in the formation of fructoselysine. tmpzr1t_l9r_go_relaxed.owl fructosyllysine biosynthesis|fructosyllysine formation|fructosyllysine synthesis|fructosyllysine biosynthetic process|fructosyllysine anabolism yaf 2012-08-17T15:05:05Z biological_process owl:Class GO:0070957 biolink:NamedThing negative regulation of neutrophil mediated killing of gram-negative bacterium Any process that decreases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl down-regulation of neutrophil mediated killing of gram-negative bacterium|down regulation of neutrophil mediated killing of gram-negative bacterium|inhibition of neutrophil mediated killing of gram-negative bacterium|downregulation of neutrophil mediated killing of gram-negative bacterium mah 2009-10-01T02:20:17Z biological_process owl:Class GO:0070951 biolink:NamedThing regulation of neutrophil mediated killing of gram-negative bacterium Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a gram-negative bacterium, the directed killing of a gram-negative bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-01T02:14:36Z biological_process owl:Class GO:0010683 biolink:NamedThing tricyclic triterpenoid metabolic process The chemical reactions and pathways involving tricyclic triterpenoid compounds, terpenoids with six isoprene units and 3 rings. tmpzr1t_l9r_go_relaxed.owl tricyclic triterpenoid metabolism biological_process owl:Class GO:0004131 biolink:NamedThing cytosine deaminase activity Catalysis of the reaction: cytosine + H2O = uracil + NH3. tmpzr1t_l9r_go_relaxed.owl isocytosine deaminase activity|cytosine aminohydrolase activity RHEA:20605|EC:3.5.4.1|MetaCyc:CYTDEAM-RXN molecular_function owl:Class GO:0016814 biolink:NamedThing hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2. tmpzr1t_l9r_go_relaxed.owl EC:3.5.4.- molecular_function owl:Class GO:0032874 biolink:NamedThing positive regulation of stress-activated MAPK cascade Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of stress-activated MAPKKK signalling pathway|positive regulation of stress-activated MAPK signaling pathway|positive regulation of p38 MAPK signalling|up-regulation of stress-activated MAPK cascade|positive regulation of stress-activated MAPKKK cascade|positive regulation of stress-activated MAPK signalling pathway|up regulation of stress-activated MAPK cascade|positive regulation of p38 MAPK signaling|upregulation of stress-activated MAPK cascade|activation of stress-activated MAPK cascade|stimulation of stress-activated MAPK cascade|positive regulation of stress-activated MAPKKK signaling pathway biological_process owl:Class GO:0060716 biolink:NamedThing labyrinthine layer blood vessel development The process whose specific outcome is the progression of a blood vessel of the labyrinthine layer of the placenta over time, from its formation to the mature structure. The embryonic vessels grow through the layer to come in close contact with the maternal blood supply. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T09:04:38Z biological_process owl:Class GO:0048608 biolink:NamedThing reproductive structure development The reproductive developmental process whose specific outcome is the progression of somatic structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990573 biolink:NamedThing potassium ion import across plasma membrane The directed movement of potassium ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl potassium ion import|potassium ion uptake|potassium import vw 2014-12-04T09:48:12Z GO:0010107 biological_process owl:Class GO:0098659 biolink:NamedThing inorganic cation import across plasma membrane The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl inorganic cation import into cell biological_process owl:Class GO:0098571 biolink:NamedThing lumenal side of plastid thylakoid membrane The side (leaflet) of the plastid thylakoid membrane that faces the lumen, and any proteins embedded in it or loosely bound to its surface. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098552 biolink:NamedThing side of membrane A cellular component consisting of one leaflet of a membrane bilayer and any proteins embedded or anchored in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T11:28:04Z cellular_component owl:Class GO:0005655 biolink:NamedThing nucleolar ribonuclease P complex A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. tmpzr1t_l9r_go_relaxed.owl nucleolar RNase P complex cellular_component owl:Class GO:0030681 biolink:NamedThing multimeric ribonuclease P complex A ribonuclease P complex that generally contains a single RNA molecule and several protein molecules. Examples of this complex are found in Archaeal species. tmpzr1t_l9r_go_relaxed.owl multimeric RNase P complex cellular_component owl:Class GO:0103054 biolink:NamedThing gibberellin A12, 2-oxoglutarate:oxygen oxidoreductase activity (gibberellin A15-forming) Catalysis of the reaction: gibberellin A12 + O2 + 2-oxoglutarate <=> gibberellin A15 + carbon dioxide + succinate. tmpzr1t_l9r_go_relaxed.owl RHEA:60776|MetaCyc:RXN1F-162 molecular_function owl:Class GO:1990085 biolink:NamedThing Hda-beta clamp complex A protein complex involved in inactivating the function of DnaA and thereby preventing multiple events of replication initiation. In E. coli, this complex is composed of the beta clamp (DnaN) and Hda. tmpzr1t_l9r_go_relaxed.owl Hda-dpo3b complex|Hda-DnaN complex bhm 2013-04-30T11:53:18Z cellular_component owl:Class GO:1990078 biolink:NamedThing replication inhibiting complex A protein complex that inhibits multiple events of replication initiation during one replication cycle. tmpzr1t_l9r_go_relaxed.owl bhm 2013-04-26T13:07:03Z cellular_component owl:Class GO:0048380 biolink:NamedThing negative regulation of lateral mesodermal cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of lateral mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl negative regulation of lateral plate mesodermal cell fate specification|downregulation of lateral mesodermal cell fate specification|down regulation of lateral mesodermal cell fate specification|inhibition of lateral mesodermal cell fate specification|down-regulation of lateral mesodermal cell fate specification biological_process owl:Class GO:0042662 biolink:NamedThing negative regulation of mesodermal cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl down regulation of mesodermal cell fate specification|suppression of mesodermal cell fate|down-regulation of mesodermal cell fate specification|downregulation of mesodermal cell fate specification|inhibition of mesodermal cell fate specification biological_process owl:Class GO:1900334 biolink:NamedThing negative regulation of methane biosynthetic process from 3-(methylthio)propionic acid Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from 3-(methylthio)propionic acid. tmpzr1t_l9r_go_relaxed.owl down-regulation of methane biosynthetic process from 3-(methylthio)propionic acid|inhibition of methane biosynthetic process from 3-(methylthio)propionic acid|down regulation of methane biosynthetic process from 3-(methylthio)propionic acid|downregulation of methane biosynthetic process from 3-(methylthio)propionic acid tt 2012-04-06T01:56:23Z biological_process owl:Class GO:1901856 biolink:NamedThing negative regulation of cellular respiration Any process that stops, prevents or reduces the frequency, rate or extent of cellular respiration. tmpzr1t_l9r_go_relaxed.owl down regulation of oxidative metabolism|negative regulation of respiration|inhibition of cellular respiration|downregulation of respiration|down-regulation of oxidative metabolic process|down regulation of respiration|downregulation of oxidative metabolism|down-regulation of oxidative metabolism|down-regulation of cellular respiration|inhibition of oxidative metabolic process|negative regulation of oxidative metabolism|down regulation of oxidative metabolic process|negative regulation of oxidative metabolic process|down regulation of cellular respiration|downregulation of cellular respiration|down-regulation of respiration|inhibition of respiration|downregulation of oxidative metabolic process|inhibition of oxidative metabolism yaf 2013-02-01T09:56:23Z biological_process owl:Class GO:0045583 biolink:NamedThing regulation of cytotoxic T cell differentiation Any process that modulates the frequency, rate or extent of cytotoxic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of cytotoxic T cell development|regulation of cytotoxic T lymphocyte differentiation|regulation of cytotoxic T-lymphocyte differentiation|regulation of cytotoxic T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0034255 biolink:NamedThing regulation of urea metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving urea. tmpzr1t_l9r_go_relaxed.owl regulation of urea metabolism biological_process owl:Class GO:0002750 biolink:NamedThing antigen processing and presentation following macropinocytosis Antigen processing and presentation which is initiated by uptake of antigen via macropinocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015552 biolink:NamedThing propionate transmembrane transporter activity Enables the transfer of propionate from one side of a membrane to the other. Propionate (or propanoate) is the organic acid CH3-CH2-COOH. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900988 biolink:NamedThing ajmaline biosynthetic process The chemical reactions and pathways resulting in the formation of ajmaline. tmpzr1t_l9r_go_relaxed.owl ajmaline anabolism|ajmaline synthesis|ajmaline biosynthesis|ajmaline formation yaf 2012-06-14T09:47:33Z biological_process owl:Class GO:0034693 biolink:NamedThing U11/U12 snRNP A ribonucleoprotein complex that is formed by the association of the U11 and U12 small nuclear ribonucleoproteins. tmpzr1t_l9r_go_relaxed.owl 18S U11/U12 snRNP|snRNP U11/U12 cellular_component owl:Class GO:0097525 biolink:NamedThing spliceosomal snRNP complex A small ribonucleoprotein complex involved in formation of the spliceosome. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-18T15:57:45Z cellular_component owl:Class GO:0072125 biolink:NamedThing negative regulation of glomerular mesangial cell proliferation Any process that decreases the frequency, rate or extent of glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T01:48:49Z biological_process owl:Class GO:0016710 biolink:NamedThing trans-cinnamate 4-monooxygenase activity Catalysis of the reaction: trans-cinnamate + NADPH + H+ + O2 = 4-hydroxycinnamate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cinnamic 4-hydroxylase activity|cinnamic acid 4-monooxygenase activity|hydroxylase, cinnamate 4-|cinnamic acid 4-hydroxylase activity|cinnamate 4-hydroxylase activity|cytochrome P450 cinnamate 4-hydroxylase activity|CA4H activity|cinnamate 4-monooxygenase activity|t-cinnamic acid hydroxylase activity|oxygenase, cinnamate 4-mono-|cinnamate hydroxylase activity|trans-cinnamate,NADPH:oxygen oxidoreductase (4-hydroxylating)|trans-cinnamate 4-hydroxylase activity|trans-cinnamic acid 4-hydroxylase activity|cinnamic acid p-hydroxylase activity MetaCyc:TRANS-CINNAMATE-4-MONOOXYGENASE-RXN|RHEA:10608|EC:1.14.14.91 molecular_function owl:Class GO:1904218 biolink:NamedThing negative regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of phosphatidylserine synthetase activity|downregulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|negative regulation of PS synthase activity|negative regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|downregulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|negative regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|downregulation of phosphatidylserine synthase activity|down-regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|down regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|down-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|down regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|negative regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|negative regulation of phosphatidylserine synthase activity|downregulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|down-regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|negative regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|inhibition of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|negative regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|down regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|inhibition of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|downregulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|inhibition of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|downregulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|inhibition of phosphatidylserine synthase activity|inhibition of PS synthase activity|down-regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|down regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|inhibition of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|down regulation of PS synthase activity|down regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|negative regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|down regulation of CDP-diglyceride:serine phosphatidyltransferase activity|downregulation of CDP-diglyceride:serine phosphatidyltransferase activity|down-regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|downregulation of PS synthase activity|down regulation of phosphatidylserine synthase activity|negative regulation of CDP-diglyceride:serine phosphatidyltransferase activity|downregulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|down regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|downregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|down regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|down-regulation of CDP-diglyceride:serine phosphatidyltransferase activity|negative regulation of phosphatidylserine synthetase activity|downregulation of phosphatidylserine synthetase activity|negative regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|down-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|inhibition of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|negative regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|down regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|inhibition of CDP-diglyceride:serine phosphatidyltransferase activity|inhibition of CDP-diglycerine-serine O-phosphatidyltransferase activity|inhibition of CDPdiglyceride-serine O-phosphatidyltransferase activity|down-regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|down-regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|down regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|inhibition of phosphatidylserine synthetase activity|down regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|downregulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|downregulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|negative regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|inhibition of CDP-diglyceride-L-serine phosphatidyltransferase activity|down-regulation of PS synthase activity|down-regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|down-regulation of phosphatidylserine synthetase activity|down-regulation of phosphatidylserine synthase activity|inhibition of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|inhibition of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|down-regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|downregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of availability of the substrate rl 2015-05-15T08:18:29Z biological_process owl:Class GO:2001044 biolink:NamedThing regulation of integrin-mediated signaling pathway Any process that modulates the frequency, rate or extent of integrin-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of integrin-mediated signalling pathway bf 2011-08-31T03:49:11Z biological_process owl:Class GO:0042976 biolink:NamedThing activation of Janus kinase activity The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it. tmpzr1t_l9r_go_relaxed.owl tyrosine phosphorylation of JAK protein|activation of JAK1 protein|activation of JAK protein by tyrosine phosphorylation|activation of JAK2 protein|activation of JAK1 kinase activity|tyrosine phosphorylation of JAK1 protein|tyrosine phosphorylation of JAK2 protein|activation of JAK2 kinase activity|activation of JAK protein|positive regulation of JAK protein activity by tyrosine phosphorylation GO:0010531|GO:0042977 biological_process owl:Class GO:0018108 biolink:NamedThing peptidyl-tyrosine phosphorylation The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0039 biological_process owl:Class GO:1905560 biolink:NamedThing negative regulation of kinetochore assembly Any process that stops, prevents or reduces the frequency, rate or extent of kinetochore assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of centromere and kinetochore complex maturation|down-regulation of chromosome-kinetochore attachment|negative regulation of centromere/kinetochore complex maturation|inhibition of centromere/kinetochore complex maturation|down-regulation of kinetochore assembly|inhibition of kinetochore assembly|inhibition of chromosome-kinetochore attachment|downregulation of chromosome-kinetochore attachment|down regulation of kinetochore formation|negative regulation of centromere and kinetochore complex maturation|down-regulation of kinetochore formation|inhibition of kinetochore formation|downregulation of kinetochore formation|down regulation of kinetochore biogenesis|down regulation of kinetochore assembly|down regulation of chromosome-kinetochore attachment|downregulation of kinetochore assembly|downregulation of centromere/kinetochore complex maturation|down-regulation of centromere and kinetochore complex maturation|negative regulation of kinetochore formation|inhibition of centromere and kinetochore complex maturation|downregulation of centromere and kinetochore complex maturation|down-regulation of centromere/kinetochore complex maturation|negative regulation of chromosome-kinetochore attachment|down regulation of centromere/kinetochore complex maturation hbye 2016-10-14T13:47:38Z biological_process owl:Class GO:0000760 biolink:NamedThing adaptation to pheromone regulating conjugation with mutual genetic exchange In organisms that undergo conjugation without cellular fusion, the process resulting in desensitization following exposure to pheromone stimulus that act to down-regulate further stimulation or block initial conjugation responses. tmpzr1t_l9r_go_relaxed.owl adaptation to pheromone involved conjugation without cellular fusion|desensitization to pheromone during conjugation without cellular fusion biological_process owl:Class GO:0046999 biolink:NamedThing regulation of conjugation Any process that modulates the rate or frequency of conjugation, the union or introduction of genetic information from compatible mating types that results in a genetically different individual. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140360 biolink:NamedThing cyclic-GMP-AMP transmembrane transporter activity Enables the transfer of cyclic-GMP-AMP from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl pg 2019-07-02T14:49:32Z molecular_function owl:Class GO:0001409 biolink:NamedThing guanine nucleotide transmembrane transporter activity Enables the transfer of guanine nucleotides (GMP, GDP, and GTP) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015351 biolink:NamedThing bilirubin secondary active transmembrane transporter activity Enables the transfer of bilirubin from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl bilitranslocase|bilirubin porter activity molecular_function owl:Class GO:1901707 biolink:NamedThing leptomycin B binding Binding to leptomycin B. tmpzr1t_l9r_go_relaxed.owl mah 2012-12-18T15:10:04Z molecular_function owl:Class GO:0015184 biolink:NamedThing L-cystine transmembrane transporter activity Enables the transfer of L-cystine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl L-cystine transporter activity|cystine/diaminopimelate porter activity Reactome:R-HSA-5340130 molecular_function owl:Class GO:0019814 biolink:NamedThing immunoglobulin complex A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl antibody Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. cellular_component owl:Class GO:0019882 biolink:NamedThing antigen processing and presentation The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl antigen presentation|antigen processing Wikipedia:Antigen_presentation GO:0030333 biological_process owl:Class GO:0002376 biolink:NamedThing immune system process Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Immune_system Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). biological_process owl:Class GO:1902999 biolink:NamedThing negative regulation of phospholipid efflux Any process that stops, prevents or reduces the frequency, rate or extent of phospholipid efflux. tmpzr1t_l9r_go_relaxed.owl inhibition of phospholipid export|down-regulation of phospholipid efflux|down-regulation of phospholipid export|negative regulation of phospholipid export|downregulation of phospholipid export|downregulation of phospholipid efflux|down regulation of phospholipid efflux|inhibition of phospholipid efflux|down regulation of phospholipid export sjp 2014-05-09T08:09:59Z biological_process owl:Class GO:1902994 biolink:NamedThing regulation of phospholipid efflux Any process that modulates the frequency, rate or extent of phospholipid efflux. tmpzr1t_l9r_go_relaxed.owl regulation of phospholipid export sjp 2014-05-08T14:55:16Z biological_process owl:Class GO:0061044 biolink:NamedThing negative regulation of vascular wound healing Any process that decreases the rate, frequency, or extent of blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to damaged vasculature. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:24:28Z biological_process owl:Class GO:0016525 biolink:NamedThing negative regulation of angiogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of angiogenesis|downregulation of angiogenesis|down-regulation of angiogenesis|inhibition of angiogenesis biological_process owl:Class GO:0099087 biolink:NamedThing anterograde axonal transport of messenger ribonucleoprotein complex The directed movement of a messenger ribonucleoprotein complex along microtubules in axons, towards the presynapse. tmpzr1t_l9r_go_relaxed.owl anterograde axonal transport of mRNA RNP complex biological_process owl:Class GO:1901126 biolink:NamedThing candicidin catabolic process The chemical reactions and pathways resulting in the breakdown of candicidin. tmpzr1t_l9r_go_relaxed.owl candicidin catabolism|candicidin degradation|candicidin breakdown yaf 2012-07-11T03:16:54Z biological_process owl:Class GO:1904291 biolink:NamedThing positive regulation of mitotic DNA damage checkpoint Any process that activates or increases the frequency, rate or extent of mitotic DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl up regulation of mitotic DNA damage checkpoint|upregulation of mitotic DNA damage checkpoint|up-regulation of mitotic DNA damage checkpoint|activation of mitotic DNA damage checkpoint kmv 2015-06-09T13:03:23Z biological_process owl:Class GO:2000003 biolink:NamedThing positive regulation of DNA damage checkpoint Any process that activates or increases the frequency, rate or extent of a DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl positive regulation of DNA damage response, signal transduction resulting in cell cycle arrest jl 2010-07-15T03:25:10Z biological_process owl:Class GO:0140105 biolink:NamedThing interleukin-10-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-10 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-10-mediated signalling pathway|IL-10-mediated signaling pathway pg 2017-09-22T16:04:42Z biological_process owl:Class GO:0004968 biolink:NamedThing gonadotropin-releasing hormone receptor activity Combining with gonadotropin-releasing hormone to initiate a change in cell activity. Gonadotropin-releasing hormone (GnRH) is a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl GnRH receptor activity|gonadotrophin-releasing hormone receptor activity molecular_function owl:Class GO:0004930 biolink:NamedThing G protein-coupled receptor activity Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl Epstein-Barr Virus-induced receptor activity|orphan G-protein coupled receptor activity|RDC1 receptor activity|super conserved receptor expressed in brain receptor activity|G-protein linked receptor activity|G protein coupled receptor activity|receptor activity, G-protein coupled|orphan G protein coupled receptor activity|SREB receptor|Mas proto-oncogene receptor activity|G-protein coupled receptor activity|G protein linked receptor activity|EBV-induced receptor|G-protein coupled receptor activity, unknown ligand|GPCR activity|orphan GPCR activity|ligand-dependent GPCR activity Reactome:R-HSA-114558|Reactome:R-HSA-167408|Reactome:R-HSA-114552|Wikipedia:GPCR GO:0001622|GO:0016526|GO:0001625|GO:0001623|GO:0001624 molecular_function owl:Class GO:0047400 biolink:NamedThing phosphonoacetate hydrolase activity Catalysis of the reaction: H(2)O + phosphonoacetate = acetate + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphonoacetate phosphonohydrolase activity EC:3.11.1.2|RHEA:16749|KEGG_REACTION:R00318|MetaCyc:3.11.1.2-RXN molecular_function owl:Class GO:0016827 biolink:NamedThing hydrolase activity, acting on acid carbon-phosphorus bonds Catalysis of the hydrolysis of any acid carbon-phosphorus bond. tmpzr1t_l9r_go_relaxed.owl EC:3.11.-.- molecular_function owl:Class GO:0017183 biolink:NamedThing peptidyl-diphthamide biosynthetic process from peptidyl-histidine The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthamide formation from peptidyl-histidine|peptidyl-diphthamide anabolism from peptidyl-histidine|peptidyl-diphthamide synthesis from peptidyl-histidine RESID:AA0040 biological_process owl:Class GO:1900247 biolink:NamedThing regulation of cytoplasmic translational elongation Any process that modulates the frequency, rate or extent of cytoplasmic translational elongation. tmpzr1t_l9r_go_relaxed.owl vw 2012-04-03T05:07:02Z biological_process owl:Class GO:0052644 biolink:NamedThing chlorophyllide a metabolic process The chemical reactions and pathways involving chlorophyllide a, a chlorophyll lacking the terpenoid side chain, which is the functional parent of chlorophyll a. tmpzr1t_l9r_go_relaxed.owl chlorophyllide a metabolism biological_process owl:Class GO:1903791 biolink:NamedThing uracil transmembrane transport The process in which uracil is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-12T10:15:25Z biological_process owl:Class GO:0015857 biolink:NamedThing uracil transport The directed movement of uracil, 2,4-dioxopyrimidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098002 biolink:NamedThing receptor-mediated bacteriophage irreversible attachment to host cell The processes by which a bacteriophage initially commits to infection by binding the host receptor irreversibly. Disruption of the phage:cell complex at this step results in the loss of infective phage virions since the process is characterized by conformational changes of bacteriophage head and tail proteins and injection of bacteriophage proteins into the infected cell. tmpzr1t_l9r_go_relaxed.owl irreversible bacteriophage attachment, binding of host cell surface receptor|phage irreversible adsorption bm biological_process owl:Class GO:0098670 biolink:NamedThing entry receptor-mediated virion attachment to host cell The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface that mediates/triggers viral entry by endocytosis/pinocytosis or by inducing fusion/penetration. tmpzr1t_l9r_go_relaxed.owl viral attachment to host entry receptor VZ:3942 dos 2017-01-16T13:18:27Z biological_process owl:Class GO:0042616 biolink:NamedThing paclitaxel metabolic process The chemical reactions and pathways involving paclitaxel, a tetracyclic diterpenoid isolated originally from the bark of the Pacific yew tree, Taxus brevifolia. tmpzr1t_l9r_go_relaxed.owl taxol metabolism|paclitaxel metabolism|taxol metabolic process biological_process owl:Class GO:0004694 biolink:NamedThing eukaryotic translation initiation factor 2alpha kinase activity Catalysis of the reaction: ATP + [eukaryotic translation initiation factor 2 alpha subunit] = ADP + [eukaryotic translation initiation factor 2 alpha subunit] phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045182 biolink:NamedThing translation regulator activity Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome. tmpzr1t_l9r_go_relaxed.owl translation factor activity molecular_function owl:Class GO:0060417 biolink:NamedThing yolk The cytoplasmic part that serves as a nutrient reserve or energy source for the developing embryo. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902413 biolink:NamedThing negative regulation of mitotic cytokinesis Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl down regulation of mitotic cytokinesis|downregulation of mitotic cytokinesis|down-regulation of cytokinesis after mitosis|negative regulation of cytokinesis after mitosis|down-regulation of mitotic cytokinesis|down regulation of cytokinesis after mitosis|downregulation of cytokinesis after mitosis|inhibition of cytokinesis after mitosis|inhibition of mitotic cytokinesis jl 2013-09-12T14:11:59Z biological_process owl:Class GO:0010091 biolink:NamedThing trichome branching Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl GO:0048274 biological_process owl:Class GO:1903898 biolink:NamedThing negative regulation of PERK-mediated unfolded protein response Any process that stops, prevents or reduces the frequency, rate or extent of the PERK-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl down regulation of PKR-like ER kinase signal transduction|inhibition of PERK branch of UPR|down-regulation of PKR-like ER kinase signal transduction|down regulation of endoplasmic reticulum unfolded protein response; PERK signaling|down regulation of PERK-mediated unfolded protein response|inhibition of PKR-like ER kinase signal transduction|downregulation of PERK signaling in response to endoplasmic reticulum stress|downregulation of PERK branch of UPR|down-regulation of PERK signaling in response to endoplasmic reticulum stress|inhibition of PERK signaling in response to endoplasmic reticulum stress|negative regulation of PERK branch of UPR|down-regulation of PERK-mediated unfolded protein response|downregulation of PERK-mediated unfolded protein response|down-regulation of endoplasmic reticulum unfolded protein response; PERK signaling|inhibition of endoplasmic reticulum unfolded protein response; PERK signaling|down-regulation of PERK branch of UPR|inhibition of PERK-mediated unfolded protein response|downregulation of endoplasmic reticulum unfolded protein response; PERK signaling|negative regulation of PERK signaling in response to endoplasmic reticulum stress|downregulation of UPR signaling by PERK stress sensor|down regulation of PERK signaling in response to endoplasmic reticulum stress|negative regulation of endoplasmic reticulum unfolded protein response; PERK signaling|down-regulation of UPR signaling by PERK stress sensor|down regulation of UPR signaling by PERK stress sensor|down regulation of PERK branch of UPR|inhibition of UPR signaling by PERK stress sensor|negative regulation of UPR signaling by PERK stress sensor|negative regulation of PKR-like ER kinase signal transduction|negative regulation of EIF2AK3-mediated unfolded protein response|downregulation of PKR-like ER kinase signal transduction bf 2015-02-09T10:18:23Z biological_process owl:Class GO:1900102 biolink:NamedThing negative regulation of endoplasmic reticulum unfolded protein response Any process that stops, prevents or reduces the frequency, rate or extent of endoplasmic reticulum unfolded protein response. tmpzr1t_l9r_go_relaxed.owl down regulation of ER unfolded protein response|negative regulation of SREBP-mediated signalling pathway|downregulation of SREBP-mediated signalling pathway|inhibition of erUPR|down-regulation of erUPR|inhibition of SREBP-mediated signalling pathway|downregulation of ER unfolded protein response|downregulation of endoplasmic reticulum unfolded protein response|inhibition of ER unfolded protein response|inhibition of endoplasmic reticulum unfolded protein response|down regulation of endoplasmic reticulum unfolded protein response|down-regulation of SREBP-mediated signalling pathway|downregulation of erUPR|negative regulation of erUPR|down regulation of erUPR|down-regulation of ER unfolded protein response|negative regulation of ER unfolded protein response|down-regulation of endoplasmic reticulum unfolded protein response|down regulation of SREBP-mediated signalling pathway ppm 2012-02-15T11:15:31Z biological_process owl:Class GO:2001289 biolink:NamedThing lipid X metabolic process The chemical reactions and pathways involving lipid X, 2,3-diacylglucosamine 1-phosphate. tmpzr1t_l9r_go_relaxed.owl 2,3-Bis(beta-hydoroxymyristoyl)-beta-D-glucosaminyl 1-phosphate metabolic process|2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate metabolism|2,3-Bis(beta-hydoroxymyristoyl)-beta-D-glucosaminyl 1-phosphate metabolism|2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate metabolic process|2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose metabolism|2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose metabolic process|lipid X metabolism tb 2012-01-13T11:28:58Z biological_process owl:Class GO:0044695 biolink:NamedThing Dsc E3 ubiquitin ligase complex An E3 ubiquitin ligase complex localized to the ER and Golgi membrane. In fission yeast comprises Dsc1, 2, 3 and 4. Involved in the processes of fission yeast sre1 (human SREBP) transcriptional activator proteolytic cleavage, the multivesicular body (MVB) pathway, and a post-endoplasmic reticulum pathway for protein catabolism. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-16T13:41:48Z cellular_component owl:Class GO:0061279 biolink:NamedThing epithelial cell migration involved in mesonephric distal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to mesonephric distal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:20:56Z biological_process owl:Class GO:0072441 biolink:NamedThing response to meiotic DNA replication checkpoint signaling A process that occurs in response to signals generated as a result of meiotic DNA replication checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl meiotic DNA replication checkpoint effector process|response to signal involved in meiotic DNA replication checkpoint mah 2010-12-08T04:59:26Z biological_process owl:Class GO:0072410 biolink:NamedThing response to meiotic cell cycle checkpoint signaling A process that acts directly to delay or stop progression through the cell cycle in response to signals generated as a result of meiotic cell cycle checkpoint signaling; contributes to a meiotic cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl meiotic cell cycle checkpoint effector process|response to signal involved in meiotic cell cycle checkpoint mah 2010-12-08T03:48:38Z biological_process owl:Class GO:1902334 biolink:NamedThing fructose export from vacuole to cytoplasm The directed movement of fructose from vacuole to cytoplasm. tmpzr1t_l9r_go_relaxed.owl fructose transport from vacuole to cytoplasm tb 2013-07-26T22:18:12Z biological_process owl:Class GO:0015755 biolink:NamedThing fructose transmembrane transport The directed movement of fructose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey. tmpzr1t_l9r_go_relaxed.owl fructose transport biological_process owl:Class GO:0010372 biolink:NamedThing positive regulation of gibberellin biosynthetic process Any process that activates, maintains or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins. tmpzr1t_l9r_go_relaxed.owl positive regulation of gibberellic acid biosynthetic process biological_process owl:Class GO:0010371 biolink:NamedThing regulation of gibberellin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins. tmpzr1t_l9r_go_relaxed.owl regulation of gibberellic acid biosynthetic process biological_process owl:Class GO:0034451 biolink:NamedThing centriolar satellite A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; centriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043642 biolink:NamedThing novobiocin biosynthetic process The chemical reactions and pathways resulting in the formation of novobiocin, a coumarin antibiotic produced by the bacterium Gyrasestreptomyces spheroides, that acts by inhibiting DNA gyrase. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Novobiocin biological_process owl:Class GO:0099177 biolink:NamedThing regulation of trans-synaptic signaling Any process that modulates the frequency, rate or extent of trans-synaptic signaling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071719 biolink:NamedThing sodium-independent leukotriene transport The directed, sodium-independent, movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T03:08:42Z biological_process owl:Class GO:0071716 biolink:NamedThing leukotriene transport The directed movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T02:53:59Z biological_process owl:Class GO:0060362 biolink:NamedThing flight involved in flight behavior Self-propelled movement of an organism from one location to another through the air that is part of the organism's response to external or internal stimuli resulting in flight. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031987 biolink:NamedThing locomotion involved in locomotory behavior Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement. tmpzr1t_l9r_go_relaxed.owl locomotion during locomotory behaviour biological_process owl:Class GO:0015850 biolink:NamedThing organic hydroxy compound transport The directed movement of an organic hydroxy compound (organic alcohol) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic hydroxy compound is an organic compound having at least one hydroxy group attached to a carbon atom. tmpzr1t_l9r_go_relaxed.owl organic alcohol transport biological_process owl:Class GO:1904909 biolink:NamedThing positive regulation of maintenance of mitotic sister chromatid cohesion, telomeric Any process that activates or increases the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion, telomeric. tmpzr1t_l9r_go_relaxed.owl activation of maintenance of mitotic sister chromatid cohesion, telomeric|up regulation of maintenance of telomeric mitotic sister chromatin cohesion|positive regulation of maintenance of mitotic sister chromatin cohesion at telomere|up regulation of maintenance of sister chromatin cohesion at telomere at mitosis|upregulation of maintenance of mitotic sister chromatin cohesion at telomere|up regulation of maintenance of mitotic sister chromatin cohesion at telomere|activation of maintenance of sister chromatin cohesion at telomere at mitosis|positive regulation of maintenance of telomeric mitotic sister chromatin cohesion|up regulation of maintenance of mitotic sister chromatid cohesion, telomeric|activation of maintenance of mitotic sister chromatin cohesion at telomere|upregulation of maintenance of mitotic sister chromatid cohesion, telomeric|up-regulation of maintenance of telomeric mitotic sister chromatin cohesion|upregulation of maintenance of sister chromatin cohesion at telomere at mitosis|up-regulation of maintenance of mitotic sister chromatin cohesion at telomere|positive regulation of maintenance of sister chromatin cohesion at telomere at mitosis|up-regulation of maintenance of sister chromatin cohesion at telomere at mitosis|upregulation of maintenance of telomeric mitotic sister chromatin cohesion|up-regulation of maintenance of mitotic sister chromatid cohesion, telomeric|activation of maintenance of telomeric mitotic sister chromatin cohesion rph 2016-01-19T10:30:43Z biological_process owl:Class GO:1904907 biolink:NamedThing regulation of maintenance of mitotic sister chromatid cohesion, telomeric Any process that modulates the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion, telomeric. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of telomeric mitotic sister chromatin cohesion|regulation of maintenance of sister chromatin cohesion at telomere at mitosis|regulation of maintenance of mitotic sister chromatin cohesion at telomere rph 2016-01-19T10:30:29Z biological_process owl:Class GO:0042857 biolink:NamedThing chrysobactin metabolic process The chemical reactions and pathways involving the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). tmpzr1t_l9r_go_relaxed.owl chrysobactin metabolism biological_process owl:Class GO:1901374 biolink:NamedThing acetate ester transport The directed movement of an acetate ester into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-28T10:42:13Z biological_process owl:Class GO:0071702 biolink:NamedThing organic substance transport The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-08T02:15:14Z biological_process owl:Class GO:0034635 biolink:NamedThing glutathione transport The directed movement of glutathione, the tripeptide glutamylcysteinylglycine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042939 biolink:NamedThing tripeptide transport The directed movement of a tripeptide, a compound containing three amino acids linked together by peptide bonds, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010123 biolink:NamedThing acetate catabolic process to butyrate, ethanol, acetone and butanol The anaerobic chemical reactions and pathways resulting in the breakdown of acetate to form butyrate, ethanol, acetone and butanol. tmpzr1t_l9r_go_relaxed.owl acetate fermentation to butyrate, ethanol, acetone and butanol MetaCyc:CENTFERM-PWY biological_process owl:Class GO:0043443 biolink:NamedThing acetone metabolic process The chemical reactions and pathways involving acetone, propan-2-one. tmpzr1t_l9r_go_relaxed.owl 2-propanone metabolism|propan-2-one metabolism|dimethyl ketone metabolic process|propan-2-one metabolic process|2-propanone metabolic process|dimethyl ketone metabolism|acetone metabolism biological_process owl:Class GO:0060331 biolink:NamedThing negative regulation of response to interferon-gamma Any process that decreases the rate, frequency or extent of a response to interferon-gamma. Response to interferon gamma is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of response to immune interferon|negative regulation of response to type II interferon|negative regulation of response to type II IFN|negative regulation of response to gamma-interferon biological_process owl:Class GO:0030193 biolink:NamedThing regulation of blood coagulation Any process that modulates the frequency, rate or extent of blood coagulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050818 biolink:NamedThing regulation of coagulation Any process that modulates the frequency, rate or extent of coagulation, the process in which a fluid solution, or part of it, changes into a solid or semisolid mass. tmpzr1t_l9r_go_relaxed.owl regulation of clotting biological_process owl:Class GO:0019627 biolink:NamedThing urea metabolic process The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2. tmpzr1t_l9r_go_relaxed.owl urea metabolism biological_process owl:Class GO:0043603 biolink:NamedThing cellular amide metabolic process The chemical reactions and pathways involving an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl amide metabolism biological_process owl:Class GO:0140192 biolink:NamedThing regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process Any process that modulates the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:06:38Z biological_process owl:Class GO:0106070 biolink:NamedThing regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway Any process that modulates the frequency, rate or extent of an adenylate cyclase-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of adenylate cyclase-activating G-protein coupled receptor signaling pathway hjd 2017-11-28T18:28:22Z biological_process owl:Class GO:0072506 biolink:NamedThing trivalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of trivalent inorganic anions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'di-, tri-valent inorganic anion homeostasis ; GO:0055061' (sibling term 'divalent inorganic anion homeostasis' ; GO:0072505'). mah 2010-12-16T01:39:39Z biological_process owl:Class GO:0098771 biolink:NamedThing inorganic ion homeostasis Any process involved in the maintenance of an internal steady state of inorganic ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070808 biolink:NamedThing regulation of Hulle cell development Any process that modulates the frequency, rate or extent of Hulle cell development, a process that leads to the formation of Hulle cells. Hulle cells are specialized multinucleate cells that originate from a nest-like aggregation of hyphae during sexual development and serve as nurse cells to the developing cleistothecium, or fruiting body. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:51:33Z biological_process owl:Class GO:1901860 biolink:NamedThing positive regulation of mitochondrial DNA metabolic process Any process that activates or increases the frequency, rate or extent of mitochondrial DNA metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of mitochondrial DNA metabolism|activation of mtDNA metabolic process|activation of mitochondrial DNA metabolic process|up regulation of mitochondrial DNA metabolic process|activation of mitochondrial DNA metabolism|up-regulation of mitochondrial DNA metabolism|positive regulation of mitochondrial DNA metabolism|up regulation of mtDNA metabolism|up-regulation of mtDNA metabolism|positive regulation of mtDNA metabolic process|positive regulation of mtDNA metabolism|upregulation of mtDNA metabolic process|activation of mtDNA metabolism|up-regulation of mtDNA metabolic process|up regulation of mtDNA metabolic process|up-regulation of mitochondrial DNA metabolic process|up regulation of mitochondrial DNA metabolism|upregulation of mtDNA metabolism|upregulation of mitochondrial DNA metabolic process yaf 2013-02-01T10:05:14Z biological_process owl:Class GO:1904711 biolink:NamedThing regulation of Wnt-Frizzled-LRP5/6 complex assembly Any process that modulates the frequency, rate or extent of Wnt-Frizzled-LRP5/6 complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt receptor complex assembly|regulation of WNT-FZD-LRP5 complex assembly|regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|regulation of Wnt-induced Frizzled-LRP5/6 complex formation|regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|regulation of Frizzled-LRP5/6 complex assembly|regulation of Wnt-FZD-LRP5/6 trimeric complex formation|regulation of WNT-FZD-LRP5 complex formation|regulation of WNT-FZD-LRP6 complex formation|regulation of WNT-FZD-LRP6 complex assembly|regulation of Frizzled-LRP5/6 complex formation bf 2015-10-05T14:02:22Z biological_process owl:Class GO:0002507 biolink:NamedThing tolerance induction A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022408 biolink:NamedThing negative regulation of cell-cell adhesion Any process that stops, prevents or reduces the rate or extent of cell adhesion to another cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of cell-cell adhesion|down regulation of cell-cell adhesion|downregulation of cell-cell adhesion|inhibition of cell-cell adhesion biological_process owl:Class GO:0090370 biolink:NamedThing negative regulation of cholesterol efflux Any process that decreases the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:26:04Z biological_process owl:Class GO:0010874 biolink:NamedThing regulation of cholesterol efflux Any process that modulates the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048216 biolink:NamedThing negative regulation of Golgi vesicle fusion to target membrane Any process that stops, prevents, or reduces the frequency, rate or extent of Golgi vesicle fusion to target membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of Golgi vesicle fusion to target membrane|down regulation of Golgi vesicle fusion to target membrane|downregulation of Golgi vesicle fusion to target membrane|inhibition of Golgi vesicle fusion to target membrane biological_process owl:Class GO:0035477 biolink:NamedThing regulation of angioblast cell migration involved in selective angioblast sprouting Any process that modulates the frequency, rate or extent of angioblast cell migration involved in selective angioblast sprouting. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:08:28Z biological_process owl:Class GO:0030334 biolink:NamedThing regulation of cell migration Any process that modulates the frequency, rate or extent of cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106218 biolink:NamedThing galactosaminogalactan biosynthetic process The chemical reactions and pathways resulting in the formation of the exopolysaccharide galactosaminogalactan. GAG is a heteropolysaccharide composed of alpha-1,4 linked galactose, N-acetyl galactosamine (GalNAc) and galactosamine (GalN). tmpzr1t_l9r_go_relaxed.owl galactosaminogalactan synthesis|galactosaminogalactan biosynthesis|GAG biosynthetic process|galactosaminogalactan formation|galactosaminogalactan anabolism hjd 2019-08-05T14:46:56Z biological_process owl:Class GO:0051278 biolink:NamedThing fungal-type cell wall polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of the polysaccharides which make up the fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall polysaccharide synthesis|chitin- and beta-glucan-containing cell wall polysaccharide biosynthetic process|cell wall polysaccharide anabolism|cell wall polysaccharide formation biological_process owl:Class GO:0071715 biolink:NamedThing icosanoid transport The directed movement of icosanoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Icosanoids are unsaturated C20 fatty acids and skeletally related compounds. tmpzr1t_l9r_go_relaxed.owl eicosanoid transport mah 2010-03-10T02:47:22Z biological_process owl:Class GO:0072507 biolink:NamedThing divalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of divalent cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'di-, tri-valent inorganic cation homeostasis ; GO:0055066' (sibling term 'trivalent inorganic cation homeostasis' ; GO:0072508'). mah 2010-12-16T03:22:48Z biological_process owl:Class GO:0086016 biolink:NamedThing AV node cell action potential An action potential that occurs in an atrioventricular node cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl atrioventricular node cardiac muscle cell action potential|AV node cardiac muscle cell action potential tb 2011-11-10T08:58:56Z biological_process owl:Class GO:0033830 biolink:NamedThing Skp1-protein-hydroxyproline N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetylglucosamine + Skp1-protein-hydroxyproline = UDP + Skp1-protein-O-(N-acetyl-D-glucosaminyl)hydroxyproline. tmpzr1t_l9r_go_relaxed.owl UDP-GlcNAc:hydroxyproline polypeptide GlcNAc-transferase activity|UDP-GlcNAc:Skp1-hydroxyproline GlcNAc-transferase activity|UDP-N-acetyl-D-glucosamine:Skp1-protein-hydroxyproline N-acetyl-D-glucosaminyl-transferase activity|UDP-N-acetylglucosamine (GlcNAc):hydroxyproline polypeptide GlcNAc-transferase activity|Skp1-HyPro GlcNAc-transferase activity RHEA:17841|EC:2.4.1.229 molecular_function owl:Class GO:0045971 biolink:NamedThing positive regulation of juvenile hormone catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl up regulation of juvenile hormone catabolic process|stimulation of juvenile hormone catabolic process|upregulation of juvenile hormone catabolic process|activation of juvenile hormone catabolic process|up-regulation of juvenile hormone catabolic process|positive regulation of juvenile hormone catabolism|positive regulation of juvenile hormone breakdown|positive regulation of juvenile hormone degradation biological_process owl:Class GO:0106174 biolink:NamedThing phagolysosome vesicle lumen The volume enclosed by the membrane of a phagolysosome. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-11T19:10:46Z cellular_component owl:Class GO:0060205 biolink:NamedThing cytoplasmic vesicle lumen The volume enclosed by a cytoplasmic vesicle. tmpzr1t_l9r_go_relaxed.owl cytoplasmic membrane-enclosed vesicle lumen|cytoplasmic membrane-bounded vesicle lumen cellular_component owl:Class GO:0002759 biolink:NamedThing regulation of antimicrobial humoral response Any process that modulates the frequency, rate, or extent of an antimicrobial humoral response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032101 biolink:NamedThing regulation of response to external stimulus Any process that modulates the frequency, rate or extent of a response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0045883 biolink:NamedThing positive regulation of sulfur utilization Any process that activates or increases the frequency, rate or extent of sulfur utilization. tmpzr1t_l9r_go_relaxed.owl up regulation of sulfur utilization|activation of sulfur utilization|stimulation of sulfur utilization|positive regulation of sulphur utilization|up-regulation of sulfur utilization|upregulation of sulfur utilization biological_process owl:Class GO:0000248 biolink:NamedThing C-5 sterol desaturase activity Catalysis of the reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl sterol-C5-desaturase activity Reactome:R-HSA-6807053|Reactome:R-HSA-195664 molecular_function owl:Class GO:0014890 biolink:NamedThing smooth muscle atrophy A process, occurring in smooth muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000089 biolink:NamedThing positive regulation of mesonephric glomerulus development Any process that activates or increases the frequency, rate or extent of mesonephric glomerulus development. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:09:24Z biological_process owl:Class GO:2000087 biolink:NamedThing regulation of mesonephric glomerulus development Any process that modulates the frequency, rate or extent of mesonephric glomerulus development. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:09:19Z biological_process owl:Class GO:1905563 biolink:NamedThing negative regulation of vascular endothelial cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of vascular endothelial cell proliferation|downregulation of vascular endothelial cell proliferation|down regulation of vascular endothelial cell proliferation|inhibition of vascular endothelial cell proliferation nc 2016-10-17T09:24:26Z biological_process owl:Class GO:0050029 biolink:NamedThing L-lysine oxidase activity Catalysis of the reaction: L-lysine + H(2)O + O(2) = 6-amino-2-oxohexanoate + H(2)O(2) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-lysine alpha-oxidase activity|L-lysine:oxygen 2-oxidoreductase (deaminating)|L-lysyl-alpha-oxidase activity MetaCyc:PWY-5311|MetaCyc:L-LYSINE-OXIDASE-RXN|RHEA:14437|KEGG_REACTION:R00447|EC:1.4.3.14 molecular_function owl:Class GO:0001716 biolink:NamedThing L-amino-acid oxidase activity Catalysis of the reaction: a L-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl ophio-amino-acid oxidase activity|L-amino-acid:oxygen oxidoreductase (deaminating) MetaCyc:L-AMINO-ACID-OXIDASE-RXN|Reactome:R-HSA-2160492|EC:1.4.3.2|RHEA:13781 molecular_function owl:Class GO:1990251 biolink:NamedThing nuclear exosome focus An nuclear body involved in nuclear mRNA surveilllance. Contains at least Mmi1, or an ortholog of it, and the nuclear exosome. tmpzr1t_l9r_go_relaxed.owl Mmi1 nuclear focus|nuclear body https://github.com/geneontology/go-ontology/issues/19063 al 2013-12-09T12:07:46Z cellular_component owl:Class GO:0016604 biolink:NamedThing nuclear body Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao505137457 cellular_component owl:Class GO:0015810 biolink:NamedThing aspartate transmembrane transport The process in which aspartate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl mitochondrial aspartate/glutamate transport|aspartate transport biological_process owl:Class GO:1901965 biolink:NamedThing endoplasmic reticulum to chloroplast transport The directed movement of substances from endoplasmic reticulum to chloroplast. tmpzr1t_l9r_go_relaxed.owl ER to chloroplast transport tb 2013-02-20T23:48:52Z biological_process owl:Class GO:0010890 biolink:NamedThing positive regulation of sequestering of triglyceride Any process that increases the rate, frequency or extent of sequestering of triglyceride. Triglyceride sequestration is the process of binding or confining any triester of glycerol such that it is separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl positive regulation of triglyceride sequestration|positive regulation of sequestering of triacylglycerol biological_process owl:Class GO:1902443 biolink:NamedThing negative regulation of ripoptosome assembly involved in necroptotic process Any process that stops, prevents or reduces the frequency, rate or extent of ripoptosome assembly involved in a necroptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of ripoptosome assembly involved in necroptosis|down-regulation of ripoptosome assembly involved in necroptosis|down regulation of ripoptosome assembly involved in necroptosis|downregulation of ripoptosome assembly involved in necroptosis|inhibition of ripoptosome assembly involved in necroptosis dph 2013-10-10T17:51:41Z biological_process owl:Class GO:0001893 biolink:NamedThing maternal placenta development Maternally driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin. tmpzr1t_l9r_go_relaxed.owl decidua development biological_process owl:Class GO:0045026 biolink:NamedThing plasma membrane fusion The joining of the lipid bilayer membrane that surround a cell with that of another cell, producing a single cell. tmpzr1t_l9r_go_relaxed.owl cell fusion|cell-cell fusion GO:0006947 biological_process owl:Class GO:0007009 biolink:NamedThing plasma membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane organization and biogenesis|plasma membrane organisation biological_process owl:Class GO:0071661 biolink:NamedThing regulation of granzyme B production Any process that modulates the frequency, rate, or extent of production of granzyme B. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0033935 biolink:NamedThing oligoxyloglucan beta-glycosidase activity Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic links in oligoxyloglucans so as to remove successive isoprimeverose (i.e. alpha-xylo-1,6-beta-D-glucosyl-) residues from the non-reducing chain ends. tmpzr1t_l9r_go_relaxed.owl oligoxyloglucan xyloglucohydrolase activity|oligoxyloglucan hydrolase activity|isoprimeverose-producing oligoxyloglucan hydrolase activity MetaCyc:3.2.1.120-RXN|EC:3.2.1.120 molecular_function owl:Class GO:0090246 biolink:NamedThing convergent extension involved in somitogenesis The morphogenetic process in which a presomitic mesoderm narrows along the left-right axis and lengthens in the rostral-caudal axis contributing to somitogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T10:59:06Z biological_process owl:Class GO:0060026 biolink:NamedThing convergent extension The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Convergent_extension biological_process owl:Class GO:0045970 biolink:NamedThing negative regulation of juvenile hormone catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl negative regulation of juvenile hormone degradation|down-regulation of juvenile hormone catabolic process|down regulation of juvenile hormone catabolic process|downregulation of juvenile hormone catabolic process|negative regulation of juvenile hormone catabolism|inhibition of juvenile hormone catabolic process|negative regulation of juvenile hormone breakdown biological_process owl:Class GO:1900568 biolink:NamedThing chanoclavine-I aldehyde catabolic process The chemical reactions and pathways resulting in the breakdown of chanoclavine-I aldehyde. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I aldehyde breakdown|chanoclavine-I aldehyde catabolism|chanoclavine-I aldehyde degradation di 2012-05-15T06:31:21Z biological_process owl:Class GO:0004631 biolink:NamedThing phosphomevalonate kinase activity Catalysis of the reaction: (R)-5-phosphomevalonate + ATP = (R)-5-diphosphomevalonate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl 5-phosphomevalonate kinase activity|mevalonate phosphate kinase activity|ATP:5-phosphomevalonate phosphotransferase activity|ATP:(R)-5-phosphomevalonate phosphotransferase activity|mevalonic acid phosphate kinase activity|mevalonate-5-phosphate kinase activity MetaCyc:PHOSPHOMEVALONATE-KINASE-RXN|KEGG_REACTION:R03245|EC:2.7.4.2|Reactome:R-HSA-191422|RHEA:16341 molecular_function owl:Class GO:1902942 biolink:NamedThing negative regulation of voltage-gated chloride channel activity Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of voltage gated chloride channel activity|down regulation of voltage-gated chloride channel activity|downregulation of voltage gated chloride channel activity|negative regulation of voltage-dependent chloride channel activity|downregulation of voltage-dependent chloride channel activity|inhibition of voltage-dependent chloride channel activity|down regulation of voltage-dependent chloride channel activity|inhibition of voltage-gated chloride channel activity|inhibition of voltage gated chloride channel activity|downregulation of voltage-gated chloride channel activity|down-regulation of voltage-gated chloride channel activity|down regulation of voltage gated chloride channel activity|negative regulation of voltage gated chloride channel activity|down-regulation of voltage-dependent chloride channel activity als 2014-04-28T08:55:37Z biological_process owl:Class GO:1903796 biolink:NamedThing negative regulation of inorganic anion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of inorganic anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl downregulation of transmembrane inorganic anion transport|down regulation of inorganic anion membrane transport|inhibition of transmembrane inorganic anion transport|negative regulation of inorganic anion membrane transport|inhibition of inorganic anion membrane transport|negative regulation of transmembrane inorganic anion transport|downregulation of inorganic anion transmembrane transport|downregulation of inorganic anion membrane transport|down regulation of inorganic anion transmembrane transport|down regulation of transmembrane inorganic anion transport|inhibition of inorganic anion transmembrane transport|down-regulation of transmembrane inorganic anion transport|down-regulation of inorganic anion membrane transport|down-regulation of inorganic anion transmembrane transport sl 2015-01-14T21:44:59Z biological_process owl:Class GO:1903211 biolink:NamedThing mitotic recombination involved in replication fork processing Any mitotic recombination that is involved in replication fork processing. tmpzr1t_l9r_go_relaxed.owl mitotic recombination involved in replication fork restart|mitotic recombination involved in replication restart|mitotic recombination involved in collapsed replication fork processing|mitotic recombination involved in recovery from replication fork stalling|mitotic recombination involved in recovery from replication fork arrest mah 2014-07-24T09:33:40Z biological_process owl:Class GO:0006312 biolink:NamedThing mitotic recombination The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous DNA region that occurs during mitotic cell cycles. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Mitotic_crossover biological_process owl:Class GO:0051648 biolink:NamedThing vesicle localization Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of vesicle localization|cytoplasmic vesicle localization|vesicle localisation biological_process owl:Class GO:0019855 biolink:NamedThing calcium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a calcium channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005246 biolink:NamedThing calcium channel regulator activity Modulates the activity of a calcium channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000967 biolink:NamedThing rRNA 5'-end processing Any process involved in forming the mature 5' end of an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl rRNA 5' end processing biological_process owl:Class GO:0033019 biolink:NamedThing 5-hydroxyvalerate dehydrogenase activity Catalysis of the reaction: 5-hydroxyvalerate + NAD+ = 5-oxovalerate + NADH. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990177 biolink:NamedThing IHF-DNA complex A protein-DNA complex containing IHF heterodimers (an alpha and a beta chain) bound to DNA. IHF binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure, the bacterial nucleoid. tmpzr1t_l9r_go_relaxed.owl IHFa-IHFb-DNA complex|IHF complex bhm 2013-08-30T12:22:54Z cellular_component owl:Class GO:1990104 biolink:NamedThing DNA bending complex A protein-DNA complex that contains DNA in combination with a protein which binds to and bends DNA. Often plays a role in DNA compaction. tmpzr1t_l9r_go_relaxed.owl histone-like DNA binding complex bhm 2013-05-20T09:29:06Z cellular_component owl:Class GO:0017162 biolink:NamedThing aryl hydrocarbon receptor binding Binding to an aryl hydrocarbon receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000788 biolink:NamedThing negative regulation of venous endothelial cell fate commitment Any process that stops, prevents or reduces the frequency, rate or extent of venous endothelial cell fate commitment. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T01:26:16Z biological_process owl:Class GO:2000787 biolink:NamedThing regulation of venous endothelial cell fate commitment Any process that modulates the frequency, rate or extent of venous endothelial cell fate commitment. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T01:26:12Z biological_process owl:Class GO:0045955 biolink:NamedThing negative regulation of calcium ion-dependent exocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of calcium ion-dependent exocytosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion-dependent exocytosis|inhibition of calcium ion-dependent exocytosis|down regulation of calcium ion-dependent exocytosis|downregulation of calcium ion-dependent exocytosis biological_process owl:Class GO:1903306 biolink:NamedThing negative regulation of regulated secretory pathway Any process that stops, prevents or reduces the frequency, rate or extent of regulated secretory pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of regulated secretory pathway|down regulation of regulated secretory pathway|down-regulation of regulated secretory pathway|downregulation of regulated secretory pathway An example of this is protein domain-specific expression of Synaptotagmin 1 in rat (P21707) in PMID:12526776 inferred from mutant phenotype. pad 2014-08-18T10:05:02Z biological_process owl:Class GO:1904305 biolink:NamedThing negative regulation of gastro-intestinal system smooth muscle contraction Any process that stops, prevents or reduces the frequency, rate or extent of gastro-intestinal system smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl down-regulation of gastro-intestinal system smooth muscle contraction|inhibition of gastro-intestinal system smooth muscle contraction|down regulation of gastro-intestinal system smooth muscle contraction|downregulation of gastro-intestinal system smooth muscle contraction sl 2015-06-09T23:18:48Z biological_process owl:Class GO:1904304 biolink:NamedThing regulation of gastro-intestinal system smooth muscle contraction Any process that modulates the frequency, rate or extent of gastro-intestinal system smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-09T23:18:42Z biological_process owl:Class GO:0070917 biolink:NamedThing inositol phosphoceramide synthase regulator activity Binds to and modulates the activity of inositol phosphoceramide synthase. tmpzr1t_l9r_go_relaxed.owl IPC synthase regulator activity See also the molecular function term 'histone acetyltransferase activity ; GO:0004402'. mah 2009-09-10T05:27:06Z molecular_function owl:Class GO:0034668 biolink:NamedThing integrin alpha4-beta1 complex An integrin complex that comprises one alpha4 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1 complex|alpha4-beta1 integrin complex|VLA-4 complex cellular_component owl:Class GO:0050239 biolink:NamedThing pyrithiamine deaminase activity Catalysis of the reaction: 1-(4-amino-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium bromide + H2O = 1-(4-hydroxy-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium bromide + NH3. tmpzr1t_l9r_go_relaxed.owl 1-(4-amino-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium-bromide aminohydrolase activity RHEA:14537|EC:3.5.4.20|MetaCyc:PYRITHIAMIN-DEAMINASE-RXN molecular_function owl:Class GO:0019239 biolink:NamedThing deaminase activity Catalysis of the removal of an amino group from a substrate, producing a substituted or nonsubstituted ammonia (NH3/NH2R). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9014641 molecular_function owl:Class GO:0002785 biolink:NamedThing negative regulation of antimicrobial peptide production Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide production. tmpzr1t_l9r_go_relaxed.owl inhibition of antimicrobial peptide production|down regulation of antimicrobial peptide production|downregulation of antimicrobial peptide production|down-regulation of antimicrobial peptide production biological_process owl:Class GO:0002784 biolink:NamedThing regulation of antimicrobial peptide production Any process that modulates the frequency, rate, or extent of antimicrobial peptide production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903387 biolink:NamedThing positive regulation of homophilic cell adhesion Any process that activates or increases the frequency, rate or extent of homophilic cell adhesion. tmpzr1t_l9r_go_relaxed.owl up-regulation of homophilic cell adhesion|activation of homophilic cell adhesion|upregulation of homophilic cell adhesion|up regulation of homophilic cell adhesion als 2014-08-27T09:57:46Z biological_process owl:Class GO:1903385 biolink:NamedThing regulation of homophilic cell adhesion Any process that modulates the frequency, rate or extent of homophilic cell adhesion. tmpzr1t_l9r_go_relaxed.owl als 2014-08-27T09:57:30Z biological_process owl:Class GO:1904452 biolink:NamedThing negative regulation of potassium:proton exchanging ATPase activity Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of (K+ + H+)-ATPase activity|negative regulation of H+/K+-ATPase activity|down-regulation of gastric H(+)/K(+) ATPase activity|negative regulation of hydrogen:potassium exchanging ATPase activity|negative regulation of H+/K+-exchanging ATPase activity|negative regulation of H,K-ATPase activity|down regulation of gastric H(+)/K(+) ATPase activity|down regulation of hydrogen:potassium-exchanging ATPase activity|down regulation of H+/K+-ATPase activity|down regulation of H,K-ATPase activity|inhibition of hydrogen:potassium-exchanging ATPase activity|downregulation of H+-K+-ATPase activity|down regulation of H+-K+-ATPase activity|inhibition of H(+)/K(+)-ATPase activity|down regulation of H+/K+-exchanging ATPase activity|downregulation of H,K-ATPase activity|inhibition of H+/K+-ATPase activity|down-regulation of H+/K+-ATPase activity|down-regulation of H(+)/K(+)-exchanging ATPase activity|downregulation of gastric H(+)/K(+) ATPase activity|down regulation of (K+ + H+)-ATPase activity|downregulation of (K+ + H+)-ATPase activity|inhibition of ATP phosphohydrolase (H+/K+-exchanging)|downregulation of H+/K+-exchanging ATPase activity|downregulation of hydrogen/potassium-exchanging ATPase activity|inhibition of H,K-ATPase activity|down regulation of hydrogen/potassium-exchanging ATPase activity|down regulation of gastric H+/K+ ATPase|down-regulation of H,K-ATPase activity|downregulation of H(+)/K(+)-exchanging ATPase activity|down-regulation of hydrogen:potassium exchanging ATPase activity|downregulation of ATP phosphohydrolase (H+/K+-exchanging)|down-regulation of hydrogen:potassium-exchanging ATPase activity|inhibition of gastric H(+)/K(+) ATPase activity|inhibition of hydrogen:potassium exchanging ATPase activity|down-regulation of ATP phosphohydrolase (H+/K+-exchanging)|down-regulation of gastric H+/K+ ATPase|negative regulation of (K+ + H+)-ATPase activity|down regulation of H(+)/K(+)-exchanging ATPase activity|downregulation of gastric H+/K+ ATPase|inhibition of (K+ + H+)-ATPase activity|negative regulation of hydrogen:potassium-exchanging ATPase activity|negative regulation of ATP phosphohydrolase (H+/K+-exchanging)|down-regulation of H(+)/K(+)-ATPase activity|inhibition of H+/K+-exchanging ATPase activity|negative regulation of H(+)/K(+)-ATPase activity|inhibition of hydrogen/potassium-exchanging ATPase activity|negative regulation of gastric H+/K+ ATPase|negative regulation of hydrogen/potassium-exchanging ATPase activity|down regulation of H(+)/K(+)-ATPase activity|down-regulation of H+/K+-exchanging ATPase activity|down-regulation of hydrogen/potassium-exchanging ATPase activity|inhibition of H+-K+-ATPase activity|down regulation of hydrogen:potassium exchanging ATPase activity|downregulation of H(+)/K(+)-ATPase activity|downregulation of hydrogen:potassium exchanging ATPase activity|inhibition of gastric H+/K+ ATPase|negative regulation of H(+)/K(+)-exchanging ATPase activity|down regulation of ATP phosphohydrolase (H+/K+-exchanging)|downregulation of hydrogen:potassium-exchanging ATPase activity|negative regulation of gastric H(+)/K(+) ATPase activity|down-regulation of H+-K+-ATPase activity|negative regulation of H+-K+-ATPase activity|inhibition of H(+)/K(+)-exchanging ATPase activity|downregulation of H+/K+-ATPase activity sl 2015-07-08T23:00:09Z biological_process owl:Class GO:1904451 biolink:NamedThing regulation of potassium:proton exchanging ATPase activity Any process that modulates the frequency, rate or extent of hydrogen:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl regulation of H+-K+-ATPase activity|regulation of H(+)/K(+)-ATPase activity|regulation of H(+)/K(+)-exchanging ATPase activity|regulation of hydrogen:potassium exchanging ATPase activity|regulation of hydrogen:potassium-exchanging ATPase activity|regulation of gastric H(+)/K(+) ATPase activity|regulation of gastric H+/K+ ATPase|regulation of (K+ + H+)-ATPase activity|regulation of hydrogen/potassium-exchanging ATPase activity|regulation of proton pump activity|regulation of H,K-ATPase activity|regulation of H+/K+-exchanging ATPase activity|regulation of ATP phosphohydrolase (H+/K+-exchanging)|regulation of H+/K+-ATPase activity sl 2015-07-08T23:00:03Z biological_process owl:Class GO:0043369 biolink:NamedThing CD4-positive or CD8-positive, alpha-beta T cell lineage commitment The process in which an immature T cell commits to CD4-positive T cell lineage or the CD8-positive lineage of alpha-beta T cells. tmpzr1t_l9r_go_relaxed.owl CD4-positive/CD8-positive, alpha-beta T cell lineage commitment|CD4-positive or CD8-positive, alpha-beta T-lymphocyte lineage commitment|CD4-positive or CD8-positive, alpha-beta T-cell lineage commitment|CD4-positive or CD8-positive, alpha-beta T lymphocyte lineage commitment biological_process owl:Class GO:0002360 biolink:NamedThing T cell lineage commitment The process in which a lymphoid progenitor cell becomes committed to becoming any type of T cell. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte lineage commitment|T lymphocyte lineage commitment|T-cell lineage commitment biological_process owl:Class GO:0046656 biolink:NamedThing folic acid biosynthetic process The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid. tmpzr1t_l9r_go_relaxed.owl vitamin B9 biosynthetic process|folic acid anabolism|vitamin M biosynthesis|folic acid biosynthesis|folic acid synthesis|vitamin B9 biosynthesis|folate biosynthesis|folic acid formation|folate biosynthetic process|vitamin M biosynthetic process Wikipedia:Folic_acid|MetaCyc:FOLSYN-PWY biological_process owl:Class GO:0042364 biolink:NamedThing water-soluble vitamin biosynthetic process The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water. tmpzr1t_l9r_go_relaxed.owl water-soluble vitamin formation|water-soluble vitamin biosynthesis|water-soluble vitamin anabolism|water-soluble vitamin synthesis biological_process owl:Class GO:0036255 biolink:NamedThing response to methylamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-15T01:07:27Z biological_process owl:Class GO:0014075 biolink:NamedThing response to amine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups. tmpzr1t_l9r_go_relaxed.owl response to amine stimulus biological_process owl:Class GO:0035107 biolink:NamedThing appendage morphogenesis The process in which the anatomical structures of appendages are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018250 biolink:NamedThing peptidyl-dehydroalanine biosynthetic process from peptidyl-tyrosine or peptidyl-serine The formation of peptidyl-dehydroalanine from either peptidyl-tyrosine by phenyl transfer, or from peptidyl-serine, which is coupled with the formation of 5-imidazolinone by the two neighboring residues, produces an 4-methylidene-imidazole-5-one active site of some amino acid ammonia-lyases; the 4-methylidene-imidazole-5-one, is formed autocatalytically by cyclization and dehydration of the sequence ASG. tmpzr1t_l9r_go_relaxed.owl peptidyl-dehydroalanine anabolism from peptidyl-tyrosine or peptidyl-serine|peptidyl-dehydroalanine synthesis from peptidyl-tyrosine or peptidyl-serine|peptidyl-dehydroalanine formation from peptidyl-tyrosine or peptidyl-serine RESID:AA0181 biological_process owl:Class GO:0015712 biolink:NamedThing hexose phosphate transport The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015748 biolink:NamedThing organophosphate ester transport The directed movement of organophosphate esters into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organophosphate esters are small organic molecules containing phosphate ester bonds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002868 biolink:NamedThing negative regulation of B cell deletion Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell deletion. tmpzr1t_l9r_go_relaxed.owl down-regulation of B cell deletion|inhibition of B cell deletion|negative regulation of B lymphocyte deletion|negative regulation of B-cell deletion|downregulation of B cell deletion|down regulation of B cell deletion|negative regulation of B-lymphocyte deletion biological_process owl:Class GO:0044013 biolink:NamedThing H2B histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone H2B L-lysine = CoA + histone H2B N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl H2B histone lysine N-acetyltransferase activity molecular_function owl:Class GO:0004402 biolink:NamedThing histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. tmpzr1t_l9r_go_relaxed.owl H3/H4 histone acetyltransferase activity|histone acetylase activity|histone acetokinase activity|histone transacetylase activity|acetyl-CoA:histone acetyltransferase activity|H2A/H2B histone acetyltransferase activity|H4/H2A acetyltransferase activity|histone lysine acetyltransferase activity|H4/H2 histone acetyltransferase activity|nucleosome-histone acetyltransferase activity Reactome:R-HSA-3301345|Reactome:R-HSA-3697008|Reactome:R-HSA-3697920|MetaCyc:HISTONE-ACETYLTRANSFERASE-RXN|Reactome:R-HSA-3451147|EC:2.3.1.48|Reactome:R-HSA-3662335|Reactome:R-HSA-5250938|Reactome:R-HSA-3318413|Reactome:R-HSA-3321883|Reactome:R-HSA-3662318|RHEA:21992|Reactome:R-HSA-3321805|Reactome:R-HSA-3321975|Reactome:R-HSA-3318486|Reactome:R-HSA-3318415|Reactome:R-HSA-3301237|Reactome:R-HSA-5144542 Note that the term 'histone lysine acetyltransferase activity ; GO:0046971' was merged into this term because only lysine residues are ever acetylated in histones, and so the term was redundant. GO:0043166|GO:0004406|GO:0046971|GO:0004404|GO:0004403|GO:0004405 molecular_function owl:Class GO:0043665 biolink:NamedThing host peribacteroid fluid The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome of a host cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090191 biolink:NamedThing negative regulation of branching involved in ureteric bud morphogenesis Any process that decreases the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:11:17Z biological_process owl:Class GO:0090189 biolink:NamedThing regulation of branching involved in ureteric bud morphogenesis Any process that modulates the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:11:17Z biological_process owl:Class GO:0045141 biolink:NamedThing meiotic telomere clustering The cell cycle process in which the dynamic reorganization of telomeres occurs in early meiotic prophase, during which meiotic chromosome ends are gathered in a bouquet arrangement at the inner surface of the nuclear envelope proximal to the spindle pole body. This plays an important role in progression through meiosis and precedes synapsis. tmpzr1t_l9r_go_relaxed.owl bouquet biosynthesis|bouquet formation biological_process owl:Class GO:0090220 biolink:NamedThing chromosome localization to nuclear envelope involved in homologous chromosome segregation The directed movement of a chromosome to the nuclear envelope that contributes to homologous chromosome segregation and precedes synapsis. tmpzr1t_l9r_go_relaxed.owl chromosome localisation to nuclear envelope involved in homologous chromosome segregation tb 2010-01-13T10:20:33Z biological_process owl:Class GO:0033400 biolink:NamedThing trans-zeatin metabolic process The chemical reactions and pathways involving trans-zeatin, (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl trans-zeatin metabolism biological_process owl:Class GO:0033397 biolink:NamedThing zeatin metabolic process The chemical reactions and pathways involving zeatin, 2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl zeatin metabolism biological_process owl:Class GO:0009291 biolink:NamedThing unidirectional conjugation The process of unidirectional (polarized) transfer of genetic information involving direct cellular contact between a donor and recipient cell; the contact is followed by the formation of a cellular bridge that physically connects the cells; some or all of the chromosome(s) of one cell ('male') is then transferred into the other cell ('female'); unidirectional conjugation occurs between cells of different mating types. Examples of this process are found in prokaryotes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000746 biolink:NamedThing conjugation The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Conjugation biological_process owl:Class GO:0009750 biolink:NamedThing response to fructose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. tmpzr1t_l9r_go_relaxed.owl response to fructose stimulus biological_process owl:Class GO:0009746 biolink:NamedThing response to hexose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. tmpzr1t_l9r_go_relaxed.owl response to hexose stimulus biological_process owl:Class GO:1903122 biolink:NamedThing negative regulation of TRAIL-activated apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of TRAIL-activated apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of TRAIL-activated apoptotic signaling pathway|negative regulation of TRAIL-activated extrinsic apoptotic signaling pathway|inhibition of TRAIL-activated extrinsic apoptotic signaling pathway|down-regulation of TRAIL-activated extrinsic apoptotic signaling pathway|down regulation of TRAIL-induced apoptotic signaling pathway|down-regulation of TRAIL-induced apoptotic signaling pathway|downregulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|negative regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|downregulation of TRAIL-induced apoptotic signaling pathway|downregulation of TRAIL-activated extrinsic apoptotic signaling pathway|down regulation of TRAIL-activated extrinsic apoptotic signaling pathway|inhibition of TRAIL-activated apoptotic signaling pathway|inhibition of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|inhibition of TRAIL-induced apoptotic signaling pathway|downregulation of TRAIL-activated apoptotic signaling pathway|down-regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|down regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|down-regulation of TRAIL-activated apoptotic signaling pathway|negative regulation of TRAIL-induced apoptotic signaling pathway bf 2014-06-17T12:39:21Z biological_process owl:Class GO:0050862 biolink:NamedThing positive regulation of T cell receptor signaling pathway Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell. tmpzr1t_l9r_go_relaxed.owl upregulation of T cell receptor signaling pathway|positive regulation of T cell receptor signalling pathway|activation of T cell receptor signaling pathway|positive regulation of T-lymphocyte receptor signaling pathway|positive regulation of T lymphocyte receptor signaling pathway|positive regulation of T-cell receptor signaling pathway|positive regulation of T-lymphocyte receptor signalling pathway|positive regulation of TCR signaling pathway|positive regulation of T lymphocyte receptor signalling pathway|stimulation of T cell receptor signaling pathway|up regulation of T cell receptor signaling pathway|up-regulation of T cell receptor signaling pathway biological_process owl:Class GO:0050856 biolink:NamedThing regulation of T cell receptor signaling pathway Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte receptor signaling pathway|regulation of T-lymphocyte receptor signalling pathway|regulation of T-cell receptor signalling pathway|regulation of TCR signaling pathway|regulation of T-cell receptor signaling pathway|regulation of T-lymphocyte receptor signaling pathway|regulation of T lymphocyte receptor signalling pathway biological_process owl:Class GO:0060562 biolink:NamedThing epithelial tube morphogenesis The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-28T09:33:36Z biological_process owl:Class GO:0035239 biolink:NamedThing tube morphogenesis The process in which the anatomical structures of a tube are generated and organized. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006629 biolink:NamedThing lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. tmpzr1t_l9r_go_relaxed.owl lipid metabolism Wikipedia:Lipid_metabolism biological_process owl:Class GO:0044238 biolink:NamedThing primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. tmpzr1t_l9r_go_relaxed.owl primary metabolism biological_process owl:Class GO:0090625 biolink:NamedThing mRNA destabilization-mediated gene silencing by siRNA The process in which small interfering RNAs (siRNAs) direct the cleavage of target mRNAs. Once incorporated into a RNA-induced silencing complex (RISC), a siRNA will typically direct cleavage by base pairing with perfect or near-perfect complementarity to the target mRNA. tmpzr1t_l9r_go_relaxed.owl mRNA cleavage involved in gene silencing by siRNA https://github.com/geneontology/go-ontology/issues/22389 tb 2015-01-21T17:15:13Z biological_process owl:Class GO:0035194 biolink:NamedThing post-transcriptional gene silencing by RNA Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger RNA (often mRNA) degradation or negatively regulate mRNA translation. tmpzr1t_l9r_go_relaxed.owl RNA-mediated posttranscriptional gene silencing|sense-PTGS|posttranscriptional gene silencing by RNA biological_process owl:Class GO:0033949 biolink:NamedThing fructan beta-(2,6)-fructosidase activity Catalysis of the hydrolysis of terminal, non-reducing (2->6) linked beta-D-fructofuranose residues in fructans. tmpzr1t_l9r_go_relaxed.owl beta-(2,6)-fructan exohydrolase activity|6-FEH|beta-(2,6)-D-fructan fructohydrolase activity EC:3.2.1.154|MetaCyc:3.2.1.154-RXN molecular_function owl:Class GO:0035367 biolink:NamedThing positive regulation of thymine transport Any process that activates or increases the frequency, rate or extent of the directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl positive regulation of 5-methyluracil transport bf 2010-03-11T10:24:25Z biological_process owl:Class GO:0072558 biolink:NamedThing NLRP1 inflammasome complex An inflammasome complex that consists of two components, NLRP1 (NALP1) and caspase-1 or caspase-5. The exact mechanisms of NLRP1 activation remain obscure, but potassium ion efflux appears to be essential. tmpzr1t_l9r_go_relaxed.owl NALP1 inflammasome complex mah 2011-01-27T12:03:50Z cellular_component owl:Class GO:0061702 biolink:NamedThing inflammasome complex A cytosolic protein complex that is capable of activating caspase-1. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-08T14:30:54Z cellular_component owl:Class GO:0035565 biolink:NamedThing regulation of pronephros size Any process that modulates the size of a pronephric kidney. tmpzr1t_l9r_go_relaxed.owl regulation of pronephric kidney size bf 2010-07-23T11:28:57Z biological_process owl:Class GO:0035564 biolink:NamedThing regulation of kidney size Any process that modulates the size of a kidney. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-23T11:28:22Z biological_process owl:Class GO:0008508 biolink:NamedThing bile acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/bile acid symporter activity Reactome:R-HSA-194187|Reactome:R-HSA-433089|Reactome:R-HSA-194121 molecular_function owl:Class GO:0034050 biolink:NamedThing programmed cell death induced by symbiont Cell death resulting from activation of endogenous cellular processes after interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). This can be triggered by direct interaction with the organism, for example, contact with penetrating hyphae of a fungus; or an indirect interaction such as symbiont-secreted molecules. tmpzr1t_l9r_go_relaxed.owl 'host programmed cell death induced by symbiont' https://github.com/geneontology/go-ontology/issues/20255 Note that this term is to be used to annotate gene products in the host, not the symbiont. To annotate gene products in the symbiont that induce programmed cell death in the host, consider the biological process term 'positive regulation by symbiont of host programmed cell death ; GO:0052042'. biological_process owl:Class GO:0051702 biolink:NamedThing biological process involved in interaction with symbiont An interaction between two organisms living together in more or less intimate association. The term symbiont is used for the smaller (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. tmpzr1t_l9r_go_relaxed.owl interaction with symbiont https://github.com/geneontology/go-ontology/issues/20191 biological_process owl:Class GO:0044656 biolink:NamedThing regulation of post-lysosomal vacuole size Any process that modulates the volume of a post-lysosomal vacuole, a membrane-bounded intracellular vesicle formed late in the endocytic pathway when the pH in the vacuole becomes neutral prior to exocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of postlysosome vacuole size|regulation of postlysosomal vacuole size|regulation of post-lysosome size jl 2012-07-26T04:30:56Z biological_process owl:Class GO:0032535 biolink:NamedThing regulation of cellular component size A process that modulates the size of a cellular component. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071812 biolink:NamedThing positive regulation of fever generation by positive regulation of prostaglandin secretion Any process that increases the rate or extent of fever generation via positive regulation of the frequency, rate or extent of the regulated release of a prostaglandin from a cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T05:10:36Z biological_process owl:Class GO:0032308 biolink:NamedThing positive regulation of prostaglandin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of a prostaglandin from a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of prostacyclin secretion|up-regulation of prostaglandin secretion|upregulation of prostaglandin secretion|up regulation of prostaglandin secretion|activation of prostaglandin secretion|stimulation of prostaglandin secretion biological_process owl:Class GO:1901189 biolink:NamedThing positive regulation of ephrin receptor signaling pathway Any process that activates or increases the frequency, rate or extent of ephrin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of Eph receptor signaling pathway|up-regulation of Eph receptor signalling pathway|up-regulation of Eph receptor signaling pathway|activation of ephrin receptor signaling pathway|upregulation of Eph receptor signalling pathway|activation of Eph receptor signaling pathway|activation of Eph receptor signalling pathway|positive regulation of Eph receptor signalling pathway|up regulation of Eph receptor signaling pathway|upregulation of ephrin receptor signaling pathway|upregulation of Eph receptor signaling pathway|up regulation of ephrin receptor signaling pathway|up regulation of Eph receptor signalling pathway|up-regulation of ephrin receptor signaling pathway rl 2012-07-24T07:42:21Z biological_process owl:Class GO:0009967 biolink:NamedThing positive regulation of signal transduction Any process that activates or increases the frequency, rate or extent of signal transduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of signal transduction|stimulation of signal transduction|up regulation of signal transduction|upregulation of signal transduction|activation of signal transduction|positive regulation of signalling pathway|positive regulation of signaling pathway GO:0035468 biological_process owl:Class GO:2001287 biolink:NamedThing negative regulation of caveolin-mediated endocytosis Any process that stops, prevents or reduces the frequency, rate or extent of caveolin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl negative regulation of caveolae-mediated endocytosis|negative regulation of caveolin-dependent endocytosis|negative regulation of caveolae-dependent endocytosis yaf 2011-12-15T04:13:27Z biological_process owl:Class GO:0048248 biolink:NamedThing CXCR3 chemokine receptor binding Binding to a CXCR3 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010325 biolink:NamedThing raffinose family oligosaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). tmpzr1t_l9r_go_relaxed.owl raffinose family oligosaccharide biosynthesis biological_process owl:Class GO:0009312 biolink:NamedThing oligosaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl oligosaccharide anabolism|oligosaccharide biosynthesis|oligosaccharide synthesis|oligosaccharide formation biological_process owl:Class GO:0046534 biolink:NamedThing positive regulation of photoreceptor cell differentiation Any process that activates or increases the frequency, rate or extent of photoreceptor cell differentiation. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl upregulation of photoreceptor cell differentiation|stimulation of photoreceptor differentiation|positive regulation of photoreceptor differentiation|stimulation of photoreceptor cell differentiation|activation of photoreceptor cell differentiation|up-regulation of photoreceptor differentiation|activation of photoreceptor differentiation|upregulation of photoreceptor differentiation|up regulation of photoreceptor differentiation|up-regulation of photoreceptor cell differentiation|up regulation of photoreceptor cell differentiation GO:0045675 biological_process owl:Class GO:1990051 biolink:NamedThing activation of protein kinase C activity Any process that initiates the activity of the inactive enzyme protein kinase C. tmpzr1t_l9r_go_relaxed.owl PKC activation|protein kinase C activation sl 2013-02-21T19:57:54Z biological_process owl:Class GO:0021576 biolink:NamedThing hindbrain formation The process that gives rise to the hindbrain. This process pertains to the initial formation of a structure from unspecified parts. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000076 biolink:NamedThing DNA replication checkpoint signaling A signal transduction process that contributes to a DNA replication checkpoint, that prevents the initiation of nuclear division until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome. tmpzr1t_l9r_go_relaxed.owl DNA replication checkpoint|signal transduction involved in DNA replication checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072437 biological_process owl:Class GO:0031570 biolink:NamedThing DNA integrity checkpoint signaling A signaling process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and progresses through signal transduction and ends with cell cycle effector processes. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in DNA integrity checkpoint|DNA integrity checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072401 biological_process owl:Class GO:0080142 biolink:NamedThing regulation of salicylic acid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of salicylic acid. tmpzr1t_l9r_go_relaxed.owl dhl 2009-05-19T04:38:23Z biological_process owl:Class GO:0010337 biolink:NamedThing regulation of salicylic acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid. tmpzr1t_l9r_go_relaxed.owl regulation of salicylic acid metabolism biological_process owl:Class GO:0071911 biolink:NamedThing synchronous neurotransmitter secretion Release of neurotransmitter at the synapse that lasts for just a few milliseconds after action potential invasion. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-22T01:38:36Z biological_process owl:Class GO:0045468 biolink:NamedThing regulation of R8 cell spacing in compound eye Any process that ensures that the R8 cells are selected in a precise progressive pattern so that they are evenly spaced throughout the eye disc. tmpzr1t_l9r_go_relaxed.owl R8 cell spacing in compound eye|regulation of R8 spacing biological_process owl:Class GO:0007389 biolink:NamedThing pattern specification process Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl pattern formation|pattern biosynthesis biological_process owl:Class GO:0032972 biolink:NamedThing regulation of muscle filament sliding speed Any process that modulates the velocity of muscle filament sliding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904385 biolink:NamedThing cellular response to angiotensin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an angiotensin stimulus. Angiotensin is any of three physiologically active peptides (angiotensin II, III, or IV) processed from angiotensinogen. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T17:27:14Z biological_process owl:Class GO:0050017 biolink:NamedThing L-3-cyanoalanine synthase activity Catalysis of the reaction: L-cysteine + HCN = sulfide + L-3-cyanoalanine. tmpzr1t_l9r_go_relaxed.owl beta-cyanoalanine synthetase activity|L-cysteine hydrogen-sulfide-lyase (adding hydrogen cyanide; L-3-cyanoalanine-forming)|beta-cyano-L-alanine synthase activity|L-cysteine hydrogen-sulfide-lyase (adding HCN)|beta-cyanoalanine synthase activity RHEA:17821|MetaCyc:L-3-CYANOALANINE-SYNTHASE-RXN|EC:4.4.1.9 molecular_function owl:Class GO:1903831 biolink:NamedThing signal transduction involved in cellular response to ammonium ion Any signal transduction that is involved in cellular response to ammonium ion. tmpzr1t_l9r_go_relaxed.owl signalling cascade involved in cellular response to ammonium ion|signaling pathway involved in cellular response to ammonium ion|signalling pathway involved in cellular response to ammonium ion|signaling cascade involved in cellular response to ammonium ion al 2015-01-21T17:52:09Z biological_process owl:Class GO:0052698 biolink:NamedThing ergothioneine metabolic process The chemical reactions and pathways involving ergothioneine, a naturally occurring metabolite of histidine with antioxidant properties. tmpzr1t_l9r_go_relaxed.owl 2-mercaptoergothioneine trimethylbetaine metabolism|(2S)-3-(2-mercapto-1H-imidazol-5-yl)-2-(trimethylazaniumyl)propanoate metabolic process|ergothioneine metabolism|2-mercaptoergothioneine trimethylbetaine metabolic process ai 2011-08-01T03:52:11Z biological_process owl:Class GO:0072716 biolink:NamedThing response to actinomycin D Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-26T02:06:40Z biological_process owl:Class GO:0046677 biolink:NamedThing response to antibiotic Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms. tmpzr1t_l9r_go_relaxed.owl antibiotic susceptibility/resistance biological_process owl:Class GO:0039613 biolink:NamedThing suppression by virus of host protein phosphorylation Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of phosphorylation of viral or host proteins in a host. tmpzr1t_l9r_go_relaxed.owl viral inhibition of host protein phosphorylation bf 2012-07-06T11:15:56Z biological_process owl:Class GO:0039612 biolink:NamedThing modulation by virus of host protein phosphorylation Any viral process that modulates the frequency, rate or extent of phosphorylation of viral or host proteins in a host. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-06T11:13:59Z biological_process owl:Class GO:1904229 biolink:NamedThing regulation of succinate dehydrogenase activity Any process that modulates the frequency, rate or extent of succinate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl regulation of succinodehydrogenase activity|regulation of fumarate dehydrogenase activity|regulation of succinate:(acceptor) oxidoreductase activity|regulation of succinate:acceptor oxidoreductase activity|regulation of succinyl dehydrogenase activity|regulation of succinic acid dehydrogenase activity|regulation of fumarate reductase activity|regulation of succinic dehydrogenase activity|regulation of succinate oxidoreductase activity|regulation of fumaric hydrogenase activity rl 2015-05-15T09:51:08Z biological_process owl:Class GO:1901284 biolink:NamedThing 5,6,7,8-tetrahydromethanopterin catabolic process The chemical reactions and pathways resulting in the breakdown of 5,6,7,8-tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydromethanopterin catabolism|5,6,7,8-tetrahydromethanopterin degradation|5,6,7,8-tetrahydromethanopterin breakdown yaf 2012-08-17T15:32:54Z biological_process owl:Class GO:0043649 biolink:NamedThing dicarboxylic acid catabolic process The chemical reactions and pathways resulting in the breakdown of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl dicarboxylate catabolism|dicarboxylic acid degradation|dicarboxylic acid breakdown|dicarboxylic acid catabolism|dicarboxylate catabolic process biological_process owl:Class GO:0005591 biolink:NamedThing collagen type VIII trimer A collagen heterotrimer containing type VIII alpha chains; [alpha1(VIII)2]alpha2(VIII) and alpha1(VIII)[alpha2(VIII)]2 trimers have been observed; type VIII collagen triple helices associate to form regular hexagonal nets. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030935 biolink:NamedThing sheet-forming collagen trimer A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers assemble into a sheet. tmpzr1t_l9r_go_relaxed.owl hexagonal network-forming collagen cellular_component owl:Class GO:0036410 biolink:NamedThing Mst2 histone acetyltransferase complex A protein complex that can catalyze the acetylation of lysine at position 14 in histone H3, and contains Mst2 as the catalytic subunit. In fission yeast, contains at least Mst2, Nto1, Ptf2, Ptf1 and Eaf6. tmpzr1t_l9r_go_relaxed.owl Mst2 histone H3K14 acetyltransferase complex|Mst2 H3K14 acetyltransferase complex|Mst2 complex bf 2013-08-21T10:11:32Z cellular_component owl:Class GO:0036409 biolink:NamedThing histone H3-K14 acetyltransferase complex A protein complex that can catalyze the acetylation of lysine at position 14 in histone H3. tmpzr1t_l9r_go_relaxed.owl histone H3 Lys 14 (H3K14) acetyltransferase complex|H3-K14 histone acetyltransferase complex|histone acetyltransferase complex (H3-K14 specific)|histone H3K14 acetyltransferase complex bf 2013-08-21T10:06:34Z cellular_component owl:Class GO:0071091 biolink:NamedThing alpha1-beta1 integrin-tissue transglutaminase complex A protein complex that consists of an alpha1-beta1 integrin complex bound to tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGA1-ITGB1-TGM2 complex mah 2009-11-06T04:46:44Z cellular_component owl:Class GO:0031331 biolink:NamedThing positive regulation of cellular catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular catabolism|positive regulation of cellular breakdown|up-regulation of cellular catabolic process|positive regulation of cellular degradation|up regulation of cellular catabolic process|activation of cellular catabolic process|upregulation of cellular catabolic process|stimulation of cellular catabolic process biological_process owl:Class GO:0034161 biolink:NamedThing positive regulation of toll-like receptor 8 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 8 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 8 signalling pathway|positive regulation of TLR8 signaling pathway biological_process owl:Class GO:0034123 biolink:NamedThing positive regulation of toll-like receptor signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor signalling pathway|positive regulation of TLR signaling pathway biological_process owl:Class GO:0038036 biolink:NamedThing sphingosine-1-phosphate receptor activity Combining with the sphingolipid sphingosine-1-phosphate (S1P), and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl S1P receptor activity bf 2011-10-28T03:46:54Z molecular_function owl:Class GO:0045125 biolink:NamedThing bioactive lipid receptor activity Combining with a bioactive lipid and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. A bioactive lipid is a lipid for which changes in lipid levels result in functional consequences in a variety of cellular processes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018075 biolink:NamedThing peptidyl-phenylalanine bromination The bromination of phenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0176|RESID:AA0174|RESID:AA0175 biological_process owl:Class GO:0018207 biolink:NamedThing peptidyl-phenylalanine modification The modification of peptidyl-phenylalanine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031246 biolink:NamedThing intrinsic component of periplasmic side of cell outer membrane The component of the cell outer membrane consisting of the gene products that that penetrate the periplasmic side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor. tmpzr1t_l9r_go_relaxed.owl intrinsic to internal side of cell outer membrane|intrinsic to internal side of outer membrane|intrinsic to external side of cell outer membrane|intrinsic to internal leaflet of cell outer membrane cellular_component owl:Class GO:0031224 biolink:NamedThing intrinsic component of membrane The component of a membrane consisting of the gene products having some covalently attached portion, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, which spans or is embedded in one or both leaflets of the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to membrane Note that proteins intrinsic to membranes cannot be removed without disrupting the membrane, e.g. by detergent. cellular_component owl:Class GO:1900006 biolink:NamedThing positive regulation of dendrite development Any process that activates or increases the frequency, rate or extent of dendrite development. tmpzr1t_l9r_go_relaxed.owl up regulation of dendrite development hjd 2012-01-09T10:41:31Z biological_process owl:Class GO:0046519 biolink:NamedThing sphingoid metabolic process The chemical reactions and pathways involving sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds. tmpzr1t_l9r_go_relaxed.owl sphingoid base metabolic process|sphingoid base metabolism|sphingoid metabolism biological_process owl:Class GO:0097446 biolink:NamedThing protein localization to eisosome filament A process in which a protein is transported to, and/or maintained in, a specific location in a eisosome filament (also called linear eisosome), a filamentous cortical structure formed, in S. pombe, by the eisosome component Pil1. tmpzr1t_l9r_go_relaxed.owl protein localization to linear eisosome pr 2012-12-17T09:37:49Z biological_process owl:Class GO:0072697 biolink:NamedThing protein localization to cell cortex A process in which a protein is transported to, or maintained in, the cell cortex. tmpzr1t_l9r_go_relaxed.owl protein localisation to cell cortex mah 2012-04-11T01:16:33Z biological_process owl:Class GO:0052670 biolink:NamedThing geraniol kinase activity Catalysis of the reaction: geraniol + nucleoside triphosphate = geranyl monophosphate + nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl geraniol phosphotransferase activity ai 2011-04-11T03:14:02Z molecular_function owl:Class GO:0052673 biolink:NamedThing prenol kinase activity Catalysis of the reaction: prenol + nucleoside triphosphate = prenyl phosphate + nucleoside diphosphate activity. tmpzr1t_l9r_go_relaxed.owl prenyl alcohol kinase activity|prenol phosphotransferase activity|prenyl alcohol phosphotransferase activity ai 2011-04-11T04:02:23Z molecular_function owl:Class GO:1990937 biolink:NamedThing xylan acetylation The addition of one or more acetyl groups to a xylan molecule. tmpzr1t_l9r_go_relaxed.owl tb 2016-03-30T22:10:22Z biological_process owl:Class GO:2001046 biolink:NamedThing positive regulation of integrin-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of integrin-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of integrin-mediated signalling pathway bf 2011-08-31T03:49:19Z biological_process owl:Class GO:0009701 biolink:NamedThing isoflavonoid phytoalexin biosynthetic process The chemical reactions and pathways resulting in the formation of isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl isoflavonoid phytoalexin formation|isoflavonoid phytoalexin biosynthesis|isoflavonoid phytoalexin anabolism|isoflavonoid phytoalexin synthesis biological_process owl:Class GO:0052315 biolink:NamedThing phytoalexin biosynthetic process The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl phytoalexin biosynthesis biological_process owl:Class GO:0015575 biolink:NamedThing mannitol transmembrane transporter activity Enables the transfer of mannitol from one side of a membrane to the other. Mannitol is the alditol derived from D-mannose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl mannitol permease activity GO:0015586 molecular_function owl:Class GO:0030168 biolink:NamedThing platelet activation A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug. tmpzr1t_l9r_go_relaxed.owl blood coagulation, platelet activation biological_process owl:Class GO:0001775 biolink:NamedThing cell activation A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010601 biolink:NamedThing positive regulation of auxin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010600 biolink:NamedThing regulation of auxin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051986 biolink:NamedThing negative regulation of attachment of spindle microtubules to kinetochore Any process that stops, prevents, or reduces the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore. tmpzr1t_l9r_go_relaxed.owl down-regulation of attachment of spindle microtubules to kinetochore|downregulation of attachment of spindle microtubules to kinetochore|inhibition of attachment of spindle microtubules to kinetochore|down regulation of attachment of spindle microtubules to kinetochore biological_process owl:Class GO:0051988 biolink:NamedThing regulation of attachment of spindle microtubules to kinetochore Any process that modulates the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore. tmpzr1t_l9r_go_relaxed.owl regulation of kinetochore-microtubule attachment biological_process owl:Class GO:0042924 biolink:NamedThing neuromedin U binding Interacting selectively and non-covalently and stoichiometrically with neuromedin U, a hypothalamic peptide involved in energy homeostasis and stress responses. tmpzr1t_l9r_go_relaxed.owl NMU binding molecular_function owl:Class GO:0043713 biolink:NamedThing (R)-2-hydroxyisocaproate dehydrogenase activity Catalysis of the reaction: 2-oxoisocaproate + NADH + H+ = (R)-2-hydroxyisocaproate + NAD+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032277 biolink:NamedThing negative regulation of gonadotropin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a gonadotropin. tmpzr1t_l9r_go_relaxed.owl inhibition of gonadotropin secretion|down-regulation of gonadotropin secretion|down regulation of gonadotropin secretion|negative regulation of gonadotrophin secretion|downregulation of gonadotropin secretion biological_process owl:Class GO:1905535 biolink:NamedThing regulation of eukaryotic translation initiation factor 4F complex assembly Any process that modulates the frequency, rate or extent of eukaryotic translation initiation factor 4F complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of eIF-4F assembly|regulation of eIF4F assembly bc 2016-10-06T14:04:58Z biological_process owl:Class GO:2000213 biolink:NamedThing positive regulation of glutamate metabolic process Any process that activates or increases the frequency, rate or extent of glutamate metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of glutamic acid metabolism|positive regulation of glutamate metabolism|positive regulation of glutamic acid metabolic process mah 2010-11-03T02:43:59Z biological_process owl:Class GO:0051731 biolink:NamedThing polynucleotide 5'-hydroxyl-kinase activity Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA. tmpzr1t_l9r_go_relaxed.owl polynucleotide 5'-hydroxy-kinase activity|PNK|polynucleotide kinase activity|polynucleotide 5'-hydroxyl kinase (phosphorylating) activity|5'-hydroxyl polynucleotide kinase activity|5'-dephosphopolynucleotide kinase activity molecular_function owl:Class GO:0052910 biolink:NamedThing 23S rRNA (adenine(2085)-N(6))-dimethyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + adenine(2085) in 23S rRNA = 2 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(2085) in 23S rRNA. tmpzr1t_l9r_go_relaxed.owl ermC 23S rRNA methyltransferase activity|rRNA:m(6)A methyltransferase ermC' activity|rRNA methyltransferase ermC' activity MetaCyc:RXN-11597|RHEA:42784|EC:2.1.1.184 molecular_function owl:Class GO:0008988 biolink:NamedThing rRNA (adenine-N6-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine. tmpzr1t_l9r_go_relaxed.owl ribosomal ribonucleate adenine 6-methyltransferase activity|ErmC 23S rRNA methyltransferase|ribonucleic acid-adenine (N(6)) methylase activity|ribonucleic acid-adenine (N6) methylase activity|S-adenosyl-L-methionine:rRNA (adenine-6-N-)-methyltransferase activity|gene ksgA methyltransferase|S-adenosyl-L-methionine:rRNA (adenine-N6-)-methyltransferase activity molecular_function owl:Class GO:1904507 biolink:NamedThing positive regulation of telomere maintenance in response to DNA damage Any process that activates or increases the frequency, rate or extent of telomere maintenance in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl upregulation of DNA damage response, telomere maintenance|up-regulation of telomere maintenance in response to DNA damage|upregulation of telomere maintenance in response to DNA damage|activation of telomere maintenance in response to DNA damage|positive regulation of DNA damage response, telomere maintenance|activation of DNA damage response, telomere maintenance|up-regulation of DNA damage response, telomere maintenance|up regulation of DNA damage response, telomere maintenance|up regulation of telomere maintenance in response to DNA damage nc 2015-07-24T16:06:09Z biological_process owl:Class GO:1904505 biolink:NamedThing regulation of telomere maintenance in response to DNA damage Any process that modulates the frequency, rate or extent of telomere maintenance in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl regulation of DNA damage response, telomere maintenance nc 2015-07-24T16:05:55Z biological_process owl:Class GO:0007027 biolink:NamedThing negative regulation of axonemal microtubule depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of the depolymerization of the specialized microtubules of the axoneme. tmpzr1t_l9r_go_relaxed.owl negative regulation of microtubule depolymerization in axoneme|axonemal microtubule stabilization biological_process owl:Class GO:0031345 biolink:NamedThing negative regulation of cell projection organization Any process that stops, prevents, or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell projections. tmpzr1t_l9r_go_relaxed.owl down-regulation of cell projection organization|inhibition of cell projection organization|negative regulation of cell projection organization and biogenesis|downregulation of cell projection organization|down regulation of cell projection organization|negative regulation of cell projection organisation biological_process owl:Class GO:0090076 biolink:NamedThing relaxation of skeletal muscle A process in which the extent of skeletal muscle tissue contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T11:44:32Z biological_process owl:Class GO:0090075 biolink:NamedThing relaxation of muscle A process in which the extent of muscle contraction is reduced. Muscle relaxation can involve a number of processes including the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases. In some muscles, calcium-independent pathways also play a role in muscle relaxation by decreasing the phosphorylation state of myosin light chain. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T11:43:38Z biological_process owl:Class GO:0000147 biolink:NamedThing actin cortical patch assembly Assembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane of fungal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030866 biolink:NamedThing cortical actin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl actin cortex stabilization|cortical resistance|cortical actin cytoskeleton organisation|cortical actin cytoskeleton stabilization|cortical actin cytoskeleton organization and biogenesis GO:0033109 biological_process owl:Class GO:1900967 biolink:NamedThing positive regulation of methanophenazine metabolic process Any process that activates or increases the frequency, rate or extent of methanophenazine metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of methanophenazine metabolic process|up-regulation of methanophenazine metabolism|activation of methanophenazine metabolic process|up-regulation of methanophenazine metabolic process|activation of methanophenazine metabolism|upregulation of methanophenazine metabolism|upregulation of methanophenazine metabolic process|up regulation of methanophenazine metabolism|positive regulation of methanophenazine metabolism tt 2012-06-14T03:55:56Z biological_process owl:Class GO:0010049 biolink:NamedThing acquisition of plant reproductive competence The process in which a plant acquires the ability to respond to a floral inductive signal. tmpzr1t_l9r_go_relaxed.owl acquisition of reproductive competence biological_process owl:Class GO:0086004 biolink:NamedThing regulation of cardiac muscle cell contraction Any process that modulates the frequency, rate or extent of cardiac muscle cell contraction. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:49:10Z biological_process owl:Class GO:0047343 biolink:NamedThing glucose-1-phosphate cytidylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + CTP = CDP-D-glucose + diphosphate. tmpzr1t_l9r_go_relaxed.owl cytidine diphosphate glucose pyrophosphorylase activity|cytidine diphosphate-D-glucose pyrophosphorylase activity|CTP:glucose-1-phosphate cytidylyltransferase activity|cytidine diphosphoglucose pyrophosphorylase activity|CTP:alpha-D-glucose-1-phosphate cytidylyltransferase activity|CDP glucose pyrophosphorylase activity|CTP:D-glucose-1-phosphate cytidylyltransferase activity|CDP-glucose diphosphorylase activity|CDP-glucose pyrophosphorylase activity RHEA:18213|EC:2.7.7.33|MetaCyc:2.7.7.33-RXN|KEGG_REACTION:R00956 molecular_function owl:Class GO:0070567 biolink:NamedThing cytidylyltransferase activity Catalysis of the transfer of a cytidylyl group to an acceptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-15T11:05:22Z molecular_function owl:Class GO:0035836 biolink:NamedThing ergot alkaloid metabolic process The chemical reactions and pathways involving an ergot alkaloid, an indole alkaloid. tmpzr1t_l9r_go_relaxed.owl ergot alkaloid metabolism bf 2011-05-04T03:23:13Z biological_process owl:Class GO:0046855 biolink:NamedThing inositol phosphate dephosphorylation The process of removing a phosphate group from any mono- or polyphosphorylated inositol. tmpzr1t_l9r_go_relaxed.owl myo-inositol phosphate dephosphorylation biological_process owl:Class GO:0071545 biolink:NamedThing inositol phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl myo-inositol phosphate catabolic process|inositol phosphate breakdown|inositol phosphate catabolism|inositol phosphate degradation See also the biological process term 'inositol phosphate dephosphorylation ; GO:0046855'. mah 2010-01-12T05:07:45Z biological_process owl:Class GO:0061961 biolink:NamedThing positive regulation of heme oxygenase activity Any process that activates or increases the frequency or rate of heme oxygenase activity. tmpzr1t_l9r_go_relaxed.owl dph 2018-01-22T20:32:05Z biological_process owl:Class GO:0046902 biolink:NamedThing regulation of mitochondrial membrane permeability Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial envelope permeability|regulation of transport across mitochondrial membrane biological_process owl:Class GO:1900789 biolink:NamedThing pseurotin A catabolic process The chemical reactions and pathways resulting in the breakdown of pseurotin A. tmpzr1t_l9r_go_relaxed.owl pseurotin A breakdown|Pseurotin catabolic process|Pseurotin catabolism|Pseurotin breakdown|Pseurotin degradation|pseurotin A catabolism|pseurotin A degradation di 2012-06-04T09:37:41Z biological_process owl:Class GO:0006749 biolink:NamedThing glutathione metabolic process The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. tmpzr1t_l9r_go_relaxed.owl oxidized glutathione reduction|glutathione metabolism biological_process owl:Class GO:0046602 biolink:NamedThing regulation of mitotic centrosome separation Any process that modulates the frequency, rate or extent of the separation of duplicated centrosome components at the beginning of mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061789 biolink:NamedThing dense core granule priming A process that converts unprimed dense core granules (DCVs) to a pool of primed vesicles that are capable of fusing with the plasma membrane (fusion-competent) and thereby releasing their contents. Priming typically occurs after docking. tmpzr1t_l9r_go_relaxed.owl large dense-core vesicle priming|dense core vesicle priming|LDCV priming dph 2016-09-08T15:41:30Z biological_process owl:Class GO:0045924 biolink:NamedThing regulation of female receptivity Any process that modulates the frequency, rate or extent of the willingness or readiness of a female to receive male advances. tmpzr1t_l9r_go_relaxed.owl female receptivity GO:0060181 biological_process owl:Class GO:0015606 biolink:NamedThing spermidine transmembrane transporter activity Enables the transfer of spermidine, N-(3-aminopropyl)-1,4-diaminobutane, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008470 biolink:NamedThing isovaleryl-CoA dehydrogenase activity Catalysis of the reaction: 3-methylbutanoyl-CoA + ETF = 3-methylbut-2-enoyl-CoA + reduced ETF. tmpzr1t_l9r_go_relaxed.owl isovaleryl-coenzyme A dehydrogenase activity|3-methylbutanoyl-CoA:acceptor oxidoreductase activity|3-methylbutanoyl-CoA:(acceptor) oxidoreductase activity|isovaleroyl-coenzyme A dehydrogenase activity Reactome:R-HSA-70745|EC:1.3.8.4|MetaCyc:ISOVALERYL-COA-FAD-RXN|RHEA:12276 molecular_function owl:Class GO:0003995 biolink:NamedThing acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl acyl-CoA reductase activity|acyl-CoA:acceptor 2,3-oxidoreductase activity|long-chain acyl coenzyme A dehydrogenase activity|medium-chain acyl-CoA dehydrogenase activity|long-chain acyl-CoA dehydrogenase activity|acyl CoA dehydrogenase activity|medium-chain acyl-coenzyme A dehydrogenase activity|acyl dehydrogenase activity|acyl coenzyme A dehydrogenase activity|general acyl CoA dehydrogenase activity|fatty acyl coenzyme A dehydrogenase activity|fatty-acyl-CoA dehydrogenase activity|acyl-CoA:(acceptor) 2,3-oxidoreductase activity Reactome:R-HSA-70859|Reactome:R-HSA-77327|Reactome:R-HSA-109341|Reactome:R-HSA-77345|MetaCyc:LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|MetaCyc:ACYLCOADEHYDROG-RXN|Reactome:R-HSA-77338|Reactome:R-HSA-77319|Reactome:R-HSA-77274|Reactome:R-HSA-77299|Reactome:R-HSA-77263|Reactome:R-HSA-5695989|Reactome:R-HSA-5695980|EC:1.3.99.3|Reactome:R-HSA-70800 GO:0019109 molecular_function owl:Class GO:0046956 biolink:NamedThing positive phototaxis The directed movement of a cell or organism towards a source of light. tmpzr1t_l9r_go_relaxed.owl positive taxis in response to light|positive phototactic behaviour|positive phototactic behavior GO:0046954 biological_process owl:Class GO:0030842 biolink:NamedThing regulation of intermediate filament depolymerization Any process that modulates the frequency, rate or extent of the disassembly of intermediate filaments by the removal of monomers from a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045108 biolink:NamedThing regulation of intermediate filament polymerization or depolymerization Any process that modulates the frequency, rate or extent of the assembly or disassembly of intermediate filaments by the addition or removal of monomers from a filament; this usually occurs through the opposing action of kinases and phosphatases. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033043 biolink:NamedThing regulation of organelle organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. tmpzr1t_l9r_go_relaxed.owl regulation of organelle organization and biogenesis|regulation of organelle organisation biological_process owl:Class GO:0033727 biolink:NamedThing aldehyde dehydrogenase (FAD-independent) activity Catalysis of the reaction: an aldehyde + H2O + acceptor = a carboxylate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl Mop|AORDd|aldehyde:acceptor oxidoreductase (FAD-independent) activity|aldehyde oxidoreductase activity EC:1.2.99.7|MetaCyc:1.2.99.3-RXN|MetaCyc:CARBOXYLATE-REDUCTASE-RXN|MetaCyc:1.2.99.7-RXN molecular_function owl:Class GO:1905951 biolink:NamedThing mitochondrion DNA recombination Any DNA recombination that takes place in mitochondrion. tmpzr1t_l9r_go_relaxed.owl DNA recombination in mitochondria vw 2017-02-19T10:48:17Z biological_process owl:Class GO:0032042 biolink:NamedThing mitochondrial DNA metabolic process The chemical reactions and pathways involving mitochondrial DNA. tmpzr1t_l9r_go_relaxed.owl mitochondrial DNA metabolism|mtDNA metabolic process|mtDNA metabolism biological_process owl:Class GO:0061921 biolink:NamedThing peptidyl-lysine propionylation The propionylation of peptidyl-lysine. tmpzr1t_l9r_go_relaxed.owl dph 2017-08-02T13:37:14Z biological_process owl:Class GO:0043543 biolink:NamedThing protein acylation The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid acylation biological_process owl:Class GO:0072281 biolink:NamedThing mesenchymal stem cell differentiation involved in metanephric nephron morphogenesis The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell that contributes to the shaping of a nephronin the metanephros. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:22:06Z biological_process owl:Class GO:0072497 biolink:NamedThing mesenchymal stem cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-15T12:59:30Z biological_process owl:Class GO:0046055 biolink:NamedThing dGMP catabolic process The chemical reactions and pathways resulting in the breakdown of dGMP, deoxyguanosine monophosphate (2'-deoxyguanosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dGMP breakdown|dGMP catabolism|dGMP degradation biological_process owl:Class GO:0009172 biolink:NamedThing purine deoxyribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside monophosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside monophosphate catabolism|purine deoxyribonucleoside monophosphate breakdown|purine deoxyribonucleoside monophosphate degradation biological_process owl:Class GO:0072356 biolink:NamedThing chromosome passenger complex localization to kinetochore A cellular protein complex localization that acts on a chromosome passenger complex; as a result, the complex is transported to, or maintained in, a specific location at the kinetochore. A chromosome passenger complex is a protein complex that contains the BIR-domain-containing protein Survivin, Aurora B kinase, INCENP and Borealin, and coordinates various events based on its location to different structures during the course of mitosis. tmpzr1t_l9r_go_relaxed.owl chromosomal passenger complex localization to kinetochore|CPC localization to kinetochore|CPC complex localization to kinetochore|chromosome passenger complex localisation to kinetochore mah 2010-11-15T11:30:38Z biological_process owl:Class GO:0075307 biolink:NamedThing positive regulation of conidium formation Any process that activates, maintains or increases the frequency, rate or extent of conidium formation, a process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901932 biolink:NamedThing bicyclogermacrene metabolic process The chemical reactions and pathways involving bicyclogermacrene. tmpzr1t_l9r_go_relaxed.owl bicyclogermacrene metabolism ms 2013-02-18T14:54:52Z biological_process owl:Class GO:1902079 biolink:NamedThing D-valine catabolic process The chemical reactions and pathways resulting in the breakdown of D-valine. tmpzr1t_l9r_go_relaxed.owl D-valine degradation|D-valine catabolism|D-valine breakdown al 2013-04-23T21:34:29Z biological_process owl:Class GO:0019478 biolink:NamedThing D-amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids. tmpzr1t_l9r_go_relaxed.owl D-amino acid degradation|D-amino acid catabolism|D-amino acid breakdown biological_process owl:Class GO:0046623 biolink:NamedThing sphingolipid floppase activity Catalysis of the movement of a sphingolipid from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl sphingolipid-translocating ATPase activity|sphingolipid flippase activity|sphingolipid floppase activity (cytosolic to exoplasmic leaftlet) molecular_function owl:Class GO:0140328 biolink:NamedThing floppase activity Catalysis of the movement of a lipid from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl floppase activity (cytosolic to exoplasmic leaftlet) Nomenclature note. Flippases and floppases are ATP-dependent transbilayer lipid translocators. According to an extensively used, though not universal, nomenclature, they catalyze lipid transfer towards the inward monolayer (flippases) or towards the outward monolayer (floppases). Scramblases are ATP-independent, non-selective, inducing non-specific transbilayer movements across the membrane. The direction of the translocation should be taken into account for annotation (from the cytosolic to the exoplasmic leaftlet of a membrane). pg 2019-04-29T12:58:53Z molecular_function owl:Class GO:0150129 biolink:NamedThing positive regulation of interleukin-33 production Any process that activates or increases the frequency, rate or extent of interleukin-33 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-33 secretion|positive regulation of interleukin-33 biosynthetic process bc 2019-12-03T05:54:37Z GO:0150125|GO:0150132 biological_process owl:Class GO:0097703 biolink:NamedThing cellular response to pulsatile fluid shear stress Any response to pulsatile fluid shear stress that occurs at the level of a cell. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-27T14:18:23Z biological_process owl:Class GO:0097701 biolink:NamedThing response to pulsatile fluid shear stress Any response to fluid shear stress where the fluid is flowing across a solid surface with periodic variations. For example, the endothelium in straight parts of the artery tree is subjected to pulsatile shear stress with a significant forward direction, which is believed to be an important physiological stimulus enhancing vessel compliance and conferring anti-thrombotic, anti-adhesive, and anti-inflammatory effects. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-27T14:13:31Z biological_process owl:Class GO:0002812 biolink:NamedThing biosynthetic process of antibacterial peptides active against Gram-negative bacteria The chemical reactions and pathways resulting in the formation of an antibacterial peptide with activity against Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002780 biolink:NamedThing antibacterial peptide biosynthetic process The chemical reactions and pathways resulting in the formation of an antibacterial peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035681 biolink:NamedThing toll-like receptor 15 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 15. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 15 signalling pathway|TLR15 signaling pathway bf 2011-02-21T02:38:47Z biological_process owl:Class GO:0019241 biolink:NamedThing citrulline catabolic process The chemical reactions and pathways resulting in the breakdown of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins. tmpzr1t_l9r_go_relaxed.owl citrulline catabolism|citrulline degradation|citrulline breakdown MetaCyc:CITRULLINE-DEG-PWY biological_process owl:Class GO:0097753 biolink:NamedThing membrane bending A membrane organization process resulting in the bending of a membrane. tmpzr1t_l9r_go_relaxed.owl membrane curvature pr 2017-01-25T16:37:06Z biological_process owl:Class GO:0090033 biolink:NamedThing positive regulation of filamentous growth Any process that increases the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:04:21Z biological_process owl:Class GO:0010570 biolink:NamedThing regulation of filamentous growth Any process that modulates the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016272 biolink:NamedThing prefoldin complex A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. tmpzr1t_l9r_go_relaxed.owl GIM complex Wikipedia:Prefoldin cellular_component owl:Class GO:0043149 biolink:NamedThing stress fiber assembly The aggregation, arrangement and bonding together of a set of components to form a stress fiber. A stress fiber is a contractile actin filament bundle that consists of short actin filaments with alternating polarity. tmpzr1t_l9r_go_relaxed.owl actin cable formation|actin cable assembly|stress fibre biosynthesis|stress fibre formation biological_process owl:Class GO:0030038 biolink:NamedThing contractile actin filament bundle assembly Assembly of actin filament bundles in which the filaments are loosely packed (approximately 30-60 nm apart) and arranged with opposing polarities; the loose packing allows myosin (usually myosin-II) to enter the bundle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050732 biolink:NamedThing negative regulation of peptidyl-tyrosine phosphorylation Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl inhibition of peptidyl-tyrosine phosphorylation|down-regulation of peptidyl-tyrosine phosphorylation|downregulation of peptidyl-tyrosine phosphorylation|down regulation of peptidyl-tyrosine phosphorylation biological_process owl:Class GO:0050730 biolink:NamedThing regulation of peptidyl-tyrosine phosphorylation Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901293 biolink:NamedThing nucleoside phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleoside phosphate. tmpzr1t_l9r_go_relaxed.owl nucleoside phosphate biosynthesis|nucleoside phosphate synthesis|nucleoside phosphate anabolism|nucleoside phosphate formation bf 2012-08-20T12:33:45Z biological_process owl:Class GO:0034654 biolink:NamedThing nucleobase-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide and nucleic acid formation|nucleobase, nucleoside, nucleotide and nucleic acid anabolism|nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis|nucleobase, nucleoside, nucleotide and nucleic acid synthesis biological_process owl:Class GO:1900992 biolink:NamedThing (-)-secologanin metabolic process The chemical reactions and pathways involving (-)-secologanin. tmpzr1t_l9r_go_relaxed.owl (-)-secologanin metabolism yaf 2012-06-14T09:51:17Z biological_process owl:Class GO:0001100 biolink:NamedThing negative regulation of exit from mitosis Any process involved in the inhibition of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity). tmpzr1t_l9r_go_relaxed.owl inhibition of exit from mitosis|downregulation of exit from mitosis|down-regulation of exit from mitosis|down regulation of exit from mitosis biological_process owl:Class GO:0034597 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity Catalysis of the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 4-phosphohydrolase activity|inositol polyphosphate 4-phosphatase type II activity|phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase activity Reactome:R-HSA-6810410|EC:3.1.3.66|MetaCyc:3.1.3.66-RXN molecular_function owl:Class GO:0034596 biolink:NamedThing phosphatidylinositol phosphate 4-phosphatase activity Catalysis of the removal of the 4-phosphate group of a phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl PI(4)P-phosphatase activity|inositol 4-phosphatase|PtdIns4P-phosphatase activity|phosphoinositide 4-phosphatase activity|PI4P-phosphatase activity Reactome:R-HSA-8849969|Reactome:R-HSA-1676133|Reactome:R-HSA-1675988|Reactome:R-HSA-1676124 molecular_function owl:Class GO:1900689 biolink:NamedThing regulation of gliotoxin biosynthetic process Any process that modulates the frequency, rate or extent of gliotoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of gliotoxin formation|regulation of gliotoxin anabolism|regulation of gliotoxin synthesis|regulation of gliotoxin biosynthesis di 2012-05-22T04:51:38Z biological_process owl:Class GO:0042762 biolink:NamedThing regulation of sulfur metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving sulfur, the nonmetallic element sulfur or compounds that contain sulfur. tmpzr1t_l9r_go_relaxed.owl regulation of sulphur metabolic process|regulation of sulfur metabolism|regulation of sulphur metabolism biological_process owl:Class GO:0006282 biolink:NamedThing regulation of DNA repair Any process that modulates the frequency, rate or extent of DNA repair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044840 biolink:NamedThing gut granule A lysosome-related organelle contained within the intestinal cells of the nematode C. elegans. Gut granules are acidified, birefringent, autofluorescent, and contain the vacuolar H+-ATPase. They also serve as sites of cellular zinc storage. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-25T11:56:41Z cellular_component owl:Class GO:0031410 biolink:NamedThing cytoplasmic vesicle A vesicle found in the cytoplasm of a cell. tmpzr1t_l9r_go_relaxed.owl cytoplasmic membrane-enclosed vesicle|cytoplasmic, membrane-bounded vesicle|cytoplasmic membrane bounded vesicle NIF_Subcellular:sao180601769 GO:0016023 cellular_component owl:Class GO:0032508 biolink:NamedThing DNA duplex unwinding The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. tmpzr1t_l9r_go_relaxed.owl DNA unwinding|duplex DNA melting Note that this term refers to a geometric change in DNA conformation, and should not be confused with 'DNA topological change ; GO:0006265'. biological_process owl:Class GO:0032392 biolink:NamedThing DNA geometric change The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases. tmpzr1t_l9r_go_relaxed.owl Note that DNA geometric change and DNA topological change (GO:0006265) are distinct, but are usually coupled in vivo. biological_process owl:Class GO:0046057 biolink:NamedThing dADP catabolic process The chemical reactions and pathways resulting in the breakdown of dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dADP catabolism|dADP degradation|dADP breakdown biological_process owl:Class GO:0009184 biolink:NamedThing purine deoxyribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside diphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside diphosphate catabolism|purine deoxyribonucleoside diphosphate breakdown|purine deoxyribonucleoside diphosphate degradation biological_process owl:Class GO:0002915 biolink:NamedThing negative regulation of central B cell anergy Any process that stops, prevents, or reduces the frequency, rate, or extent of central B cell anergy. tmpzr1t_l9r_go_relaxed.owl down regulation of central B cell anergy|downregulation of central B cell anergy|inhibition of central B cell anergy|down-regulation of central B cell anergy biological_process owl:Class GO:0002896 biolink:NamedThing negative regulation of central B cell tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of central B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl downregulation of central B cell tolerance induction|down regulation of central B cell tolerance induction|down-regulation of central B cell tolerance induction|inhibition of central B cell tolerance induction biological_process owl:Class GO:0060224 biolink:NamedThing regulation of retinal rod cell fate commitment Any process that modulates the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000671 biolink:NamedThing regulation of motor neuron apoptotic process Any process that modulates the frequency, rate or extent of motor neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of motoneuron apoptosis|regulation of motor neuron apoptosis pr 2011-05-09T10:56:17Z biological_process owl:Class GO:0043523 biolink:NamedThing regulation of neuron apoptotic process Any process that modulates the occurrence or rate of cell death by apoptotic process in neurons. tmpzr1t_l9r_go_relaxed.owl regulation of neuron programmed cell death|regulation of programmed cell death, neurons|regulation of neuron apoptosis|regulation of programmed cell death of neuronal cells|regulation of neuronal cell programmed cell death|regulation of apoptosis of neurons|regulation of apoptosis of neuronal cells biological_process owl:Class GO:0043211 biolink:NamedThing ABC-type carbohydrate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of carbohydrates across a membrane. tmpzr1t_l9r_go_relaxed.owl carbohydrate ABC transporter|ATPase-coupled carbohydrate transmembrane transporter activity|carbohydrate-transporting ATPase activity|ATP-dependent carbohydrate transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/17289 molecular_function owl:Class GO:0030026 biolink:NamedThing cellular manganese ion homeostasis Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl manganese homeostasis biological_process owl:Class GO:0032820 biolink:NamedThing regulation of natural killer cell proliferation involved in immune response Any process that modulates the frequency, rate or extent of natural killer cell proliferation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl regulation of natural killer cell proliferation during immune response|regulation of NK cell proliferation during immune response biological_process owl:Class GO:0046342 biolink:NamedThing CDP-diacylglycerol catabolic process The chemical reactions and pathways resulting in the breakdown of CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. tmpzr1t_l9r_go_relaxed.owl CDP-diacylglycerol breakdown|CDP-diacylglycerol degradation|CDP-diacylglycerol catabolism biological_process owl:Class GO:0046341 biolink:NamedThing CDP-diacylglycerol metabolic process The chemical reactions and pathways involving CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. It is a common intermediate in phospholipid biosynthesis. tmpzr1t_l9r_go_relaxed.owl CDP-diacylglycerol metabolism biological_process owl:Class GO:1901567 biolink:NamedThing fatty acid derivative binding Binding to fatty acid derivative. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-04T17:13:28Z molecular_function owl:Class GO:2000724 biolink:NamedThing positive regulation of cardiac vascular smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of cardiac vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart vascular smooth muscle cell differentiation vk 2011-06-08T08:48:04Z biological_process owl:Class GO:0042481 biolink:NamedThing regulation of odontogenesis Any process that modulates the frequency, rate or extent of the formation and development of a tooth or teeth. tmpzr1t_l9r_go_relaxed.owl regulation of odontogenesis of calcareous or chitinous tooth|regulation of tooth development GO:0042484 biological_process owl:Class GO:2000466 biolink:NamedThing negative regulation of glycogen (starch) synthase activity Any process that stops, prevents or reduces the frequency, rate or extent of glycogen (starch) synthase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of uridine diphosphoglucose-glycogen glucosyltransferase activity|negative regulation of UDPG-glycogen transglucosylase activity|negative regulation of UDPG-glycogen synthetase activity|negative regulation of UDPglucose:glycogen 4-alpha-D-glucosyltransferase activity|negative regulation of glycogen (starch) synthetase activity|negative regulation of UDP-glycogen synthase activity|negative regulation of UDP-glucose:glycogen 4-alpha-D-glucosyltransferase activity|negative regulation of UDP-glucose-glycogen glucosyltransferase activity yaf 2011-03-07T04:13:14Z biological_process owl:Class GO:2000465 biolink:NamedThing regulation of glycogen (starch) synthase activity Any process that modulates the frequency, rate or extent of glycogen (starch) synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of UDPglucose:glycogen 4-alpha-D-glucosyltransferase activity|regulation of UDP-glucose-glycogen glucosyltransferase activity|regulation of UDPG-glycogen transglucosylase activity|regulation of UDPG-glycogen synthetase activity|regulation of glycogen (starch) synthetase activity|regulation of UDP-glucose:glycogen 4-alpha-D-glucosyltransferase activity|regulation of UDP-glycogen synthase activity|regulation of uridine diphosphoglucose-glycogen glucosyltransferase activity yaf 2011-03-07T04:12:35Z biological_process owl:Class GO:0071292 biolink:NamedThing cellular response to silver ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silver ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:16:30Z biological_process owl:Class GO:0010272 biolink:NamedThing response to silver ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silver ion stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035386 biolink:NamedThing regulation of Roundabout signaling pathway Any process that modulates the frequency, rate or extent of the Roundabout signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Roundabout signalling pathway bf 2010-03-18T02:39:24Z biological_process owl:Class GO:0009966 biolink:NamedThing regulation of signal transduction Any process that modulates the frequency, rate or extent of signal transduction. tmpzr1t_l9r_go_relaxed.owl regulation of signaling pathway|regulation of signalling pathway GO:0035466 biological_process owl:Class GO:0043153 biolink:NamedThing entrainment of circadian clock by photoperiod The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night). tmpzr1t_l9r_go_relaxed.owl photoentrainment of circadian clock biological_process owl:Class GO:0009649 biolink:NamedThing entrainment of circadian clock The synchronization of a circadian rhythm to environmental time cues such as light. tmpzr1t_l9r_go_relaxed.owl regulation of circadian rhythm phase biological_process owl:Class GO:0072355 biolink:NamedThing histone H3-T3 phosphorylation The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 3 of the histone. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-12T04:28:56Z biological_process owl:Class GO:0035405 biolink:NamedThing histone-threonine phosphorylation The modification of histones by addition of a phosphate group to a threonine residue. tmpzr1t_l9r_go_relaxed.owl histone threonine phosphorylation bf 2010-03-24T10:09:21Z biological_process owl:Class GO:1900574 biolink:NamedThing emodin catabolic process The chemical reactions and pathways resulting in the breakdown of emodin. tmpzr1t_l9r_go_relaxed.owl emodin catabolism|emodin degradation|emodin breakdown di 2012-05-15T06:42:06Z biological_process owl:Class GO:0046710 biolink:NamedThing GDP metabolic process The chemical reactions and pathways involving GDP, guanosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP metabolism biological_process owl:Class GO:0110143 biolink:NamedThing magnetosome A membrane-bound organelle that envelops particles of magnetic iron minerals in magnetotactic bacteria. Magnetosomes form linear chains that align along the cellular motility axis at midcell and function in bacterial navigation along the Earth's magnetic field. They are formed by invagination of the cell inner membrane; in some species they remain connected to the inner membrane, in others they pinch off to form independent intracellular vesicles. tmpzr1t_l9r_go_relaxed.owl kmv 2019-05-30T17:31:21Z cellular_component owl:Class GO:0002605 biolink:NamedThing negative regulation of dendritic cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl inhibition of dendritic cell antigen processing and presentation|down regulation of dendritic cell antigen processing and presentation|down-regulation of dendritic cell antigen processing and presentation|downregulation of dendritic cell antigen processing and presentation biological_process owl:Class GO:1900177 biolink:NamedThing regulation of aflatoxin biosynthetic process Any process that modulates the frequency, rate or extent of aflatoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of aflatoxin synthesis|regulation of aflatoxin anabolism|regulation of aflatoxin formation|regulation of aflatoxin biosynthesis di 2012-03-09T11:23:35Z biological_process owl:Class GO:0071413 biolink:NamedThing cellular response to hydroxyisoflavone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroxyisoflavone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T03:10:09Z biological_process owl:Class GO:0010685 biolink:NamedThing tetracyclic triterpenoid metabolic process The chemical reactions and pathways involving tetracyclic triterpenoid compounds, terpenoids with six isoprene units and 4 carbon rings. tmpzr1t_l9r_go_relaxed.owl tetracyclic triterpenoid metabolism biological_process owl:Class GO:0071303 biolink:NamedThing cellular response to vitamin B3 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B3 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to nicotinamide|cellular response to niacin mah 2009-12-10T04:35:04Z biological_process owl:Class GO:0048848 biolink:NamedThing neurohypophysis morphogenesis The process in which the anatomical structures of the neurohypophysis are generated and organized. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation. tmpzr1t_l9r_go_relaxed.owl posterior pituitary gland morphogenesis|posterior pituitary morphogenesis|neurophysis morphogenesis biological_process owl:Class GO:0022612 biolink:NamedThing gland morphogenesis The process in which the anatomical structures of a gland are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035381 biolink:NamedThing ATP-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when ATP has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-18T01:21:45Z molecular_function owl:Class GO:0015075 biolink:NamedThing ion transmembrane transporter activity Enables the transfer of an ion from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl ion transporter activity molecular_function owl:Class GO:0006611 biolink:NamedThing protein export from nucleus The directed movement of a protein from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl protein transport from nucleus to cytoplasm|copper-induced protein export from nucleus|protein-nucleus export|protein export from cell nucleus|protein export out of nucleus GO:0097349 biological_process owl:Class GO:0008558 biolink:NamedThing ABC-type guanine transporter activity Catalyses the reaction: ATP + H2O + guanine(out) = ADP + phosphate + guanine(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent guanine transmembrane transporter activity|ATPase-coupled guanine transmembrane transporter activity|guanine ABC transporter|guanine-transporting ATPase activity EC:7.6.2.6|RHEA:20832|MetaCyc:3.6.3.37-RXN molecular_function owl:Class GO:0018509 biolink:NamedThing cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase activity Catalysis of the reaction: cis-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD+ = biphenyl-2,3-diol + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase activity|cis-3-phenylcyclohexa-3,5-diene-1,2-diol:NAD+ oxidoreductase activity|biphenyl-2,3-dihydro-2,3-diol dehydrogenase activity RHEA:17033|MetaCyc:1.3.1.56-RXN|UM-BBD_enzymeID:e0134|EC:1.3.1.56 molecular_function owl:Class GO:0019403 biolink:NamedThing galactitol biosynthetic process The chemical reactions and pathways resulting in the formation of galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose. tmpzr1t_l9r_go_relaxed.owl galactitol formation|galactitol anabolism|galactitol biosynthesis|galactitol synthesis biological_process owl:Class GO:0019406 biolink:NamedThing hexitol biosynthetic process The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexitol formation|hexitol anabolism|hexitol synthesis|hexitol biosynthesis biological_process owl:Class GO:0032749 biolink:NamedThing positive regulation of interleukin-25 production Any process that activates or increases the frequency, rate, or extent of interleukin-25 production. tmpzr1t_l9r_go_relaxed.owl up-regulation of interleukin-25 production|up regulation of interleukin-25 production|positive regulation of interleukin-25 biosynthetic process|stimulation of interleukin-25 production|positive regulation of interleukin-25 secretion|upregulation of interleukin-25 production|activation of interleukin-25 production|positive regulation of IL-25 production bc 2019-12-09T16:51:44Z GO:0045537|GO:0150150 biological_process owl:Class GO:0050891 biolink:NamedThing multicellular organismal water homeostasis Any process involved in the maintenance of an internal steady state of water within a tissue, organ, or a multicellular organism. tmpzr1t_l9r_go_relaxed.owl body fluid osmoregulation biological_process owl:Class GO:0030104 biolink:NamedThing water homeostasis Any process involved in the maintenance of an internal steady state of water within an organism or cell. tmpzr1t_l9r_go_relaxed.owl osmoregulation|regulation of osmotic pressure Wikipedia:Osmoregulation GO:0018987 biological_process owl:Class GO:0097216 biolink:NamedThing guanosine tetraphosphate binding Binding to guanosine tetraphosphate (5'-ppGpp-3'), a guanosine bisphosphate having diphosphate groups at both the 3' and 5'-positions. tmpzr1t_l9r_go_relaxed.owl 5'-ppGpp-3' binding pr 2012-01-13T08:35:50Z molecular_function owl:Class GO:0032561 biolink:NamedThing guanyl ribonucleotide binding Binding to a guanyl ribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905688 biolink:NamedThing negative regulation of diacylglycerol kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of diacylglycerol kinase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATP:diacylglycerol phosphotransferase activity|down regulation of diacylglycerol:ATP kinase activity|downregulation of diglyceride kinase activity|downregulation of 1,2-diacylglycerol kinase (phosphorylating)|negative regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|negative regulation of diglyceride kinase activity|inhibition of ATP:diacylglycerol phosphotransferase activity|down regulation of ATP:diacylglycerol phosphotransferase activity|inhibition of arachidonoyl-specific diacylglycerol kinase activity|inhibition of diacylglycerol kinase activity|down-regulation of DGK activity|negative regulation of arachidonoyl-specific diacylglycerol kinase activity|inhibition of DGK activity|down regulation of DG kinase activity|down-regulation of diglyceride kinase activity|down-regulation of sn-1,2-diacylglycerol kinase activity|down-regulation of diacylglycerol:ATP kinase activity|down regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|down regulation of 1,2-diacylglycerol kinase (phosphorylating)|down regulation of diglyceride kinase activity|down regulation of sn-1,2-diacylglycerol kinase activity|downregulation of DG kinase activity|inhibition of CTP:diacylglycerol kinase activity|negative regulation of 1,2-diacylglycerol kinase activity|negative regulation of diacylglycerol:ATP kinase activity|inhibition of DG kinase activity|negative regulation of CTP:diacylglycerol kinase activity|down regulation of 1,2-diacylglycerol kinase activity|down-regulation of DG kinase activity|down-regulation of arachidonoyl-specific diacylglycerol kinase activity|down regulation of arachidonoyl-specific diacylglycerol kinase activity|inhibition of diacylglycerol:ATP kinase activity|downregulation of diacylglycerol kinase activity|down-regulation of CTP:diacylglycerol kinase activity|inhibition of ATP:1,2-diacylglycerol 3-phosphotransferase activity|negative regulation of sn-1,2-diacylglycerol kinase activity|downregulation of DGK activity|negative regulation of 1,2-diacylglycerol kinase (phosphorylating)|downregulation of 1,2-diacylglycerol kinase activity|negative regulation of DG kinase activity|down regulation of diacylglycerol kinase activity|inhibition of 1,2-diacylglycerol kinase (phosphorylating)|downregulation of CTP:diacylglycerol kinase activity|inhibition of 1,2-diacylglycerol kinase activity|inhibition of sn-1,2-diacylglycerol kinase activity|down-regulation of ATP:diacylglycerol phosphotransferase activity|negative regulation of DGK activity|downregulation of sn-1,2-diacylglycerol kinase activity|down regulation of CTP:diacylglycerol kinase activity|down-regulation of 1,2-diacylglycerol kinase activity|downregulation of diacylglycerol:ATP kinase activity|down-regulation of 1,2-diacylglycerol kinase (phosphorylating)|down-regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|downregulation of arachidonoyl-specific diacylglycerol kinase activity|inhibition of diglyceride kinase activity|downregulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|down regulation of DGK activity|downregulation of ATP:diacylglycerol phosphotransferase activity|down-regulation of diacylglycerol kinase activity bc 2016-11-14T12:26:18Z biological_process owl:Class GO:1905687 biolink:NamedThing regulation of diacylglycerol kinase activity Any process that modulates the frequency, rate or extent of diacylglycerol kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of diglyceride kinase activity|regulation of 1,2-diacylglycerol kinase (phosphorylating)|regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|regulation of DG kinase activity|regulation of DGK activity|regulation of CTP:diacylglycerol kinase activity|regulation of diacylglycerol:ATP kinase activity|regulation of 1,2-diacylglycerol kinase activity|regulation of sn-1,2-diacylglycerol kinase activity|regulation of arachidonoyl-specific diacylglycerol kinase activity|regulation of ATP:diacylglycerol phosphotransferase activity bc 2016-11-14T12:26:11Z biological_process owl:Class GO:1900966 biolink:NamedThing negative regulation of methanophenazine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of methanophenazine metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of methanophenazine metabolism|down regulation of methanophenazine metabolism|down regulation of methanophenazine metabolic process|downregulation of methanophenazine metabolic process|down-regulation of methanophenazine metabolic process|negative regulation of methanophenazine metabolism|downregulation of methanophenazine metabolism|down-regulation of methanophenazine metabolism|inhibition of methanophenazine metabolic process tt 2012-06-14T03:55:49Z biological_process owl:Class GO:1900965 biolink:NamedThing regulation of methanophenazine metabolic process Any process that modulates the frequency, rate or extent of methanophenazine metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of methanophenazine metabolism tt 2012-06-14T03:55:26Z biological_process owl:Class GO:1904575 biolink:NamedThing positive regulation of selenocysteine insertion sequence binding Any process that activates or increases the frequency, rate or extent of selenocysteine insertion sequence binding. tmpzr1t_l9r_go_relaxed.owl activation of selenocysteine insertion sequence binding|up-regulation of selenocysteine insertion sequence binding|activation of SECIS binding|upregulation of selenocysteine insertion sequence binding|up regulation of selenocysteine insertion sequence binding|positive regulation of SECIS binding|up-regulation of SECIS binding|up regulation of SECIS binding|upregulation of SECIS binding sl 2015-08-19T17:51:21Z biological_process owl:Class GO:0002308 biolink:NamedThing CD8-positive, alpha-beta cytotoxic T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta cytotoxic T cell. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta cytotoxic T lymphocyte differentiation|CD8-positive, alpha-beta cytotoxic T-lymphocyte differentiation|CD8-positive, alpha-beta cytotoxic T-cell differentiation|CD8-positive, alpha-beta cytotoxic T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045065 biolink:NamedThing cytotoxic T cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a cytotoxic T cell. tmpzr1t_l9r_go_relaxed.owl cytotoxic T cell development|cytotoxic T-cell selection|cytotoxic T-lymphocyte selection|cytotoxic T lymphocyte selection Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002475 biolink:NamedThing antigen processing and presentation via MHC class Ib The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043005 biolink:NamedThing neuron projection A prolongation or process extending from a nerve cell, e.g. an axon or dendrite. tmpzr1t_l9r_go_relaxed.owl nerve fiber|neuronal cell projection|neurite|neuron protrusion|neuron process NIF_Subcellular:sao867568886 cellular_component owl:Class GO:0043872 biolink:NamedThing lysine:cadaverine antiporter activity Catalysis of the reaction: lysine(out) + cadaverine(in) = lysine(in) + cadaverine(out). tmpzr1t_l9r_go_relaxed.owl cadaverine:lysine antiporter activity|cadaverine transmembrane transporter activity|lysine/cadaverine antiporter activity|lysine-cadaverine antiporter activity GO:0015490|GO:0015497 molecular_function owl:Class GO:0050898 biolink:NamedThing nitrile metabolic process The chemical reactions and pathways involving nitriles, an organic compound containing trivalent nitrogen attached to one carbon atom. The nitriles are named with reference to the acids produced by their decomposition; for example, hydrocyanic acid is formic nitrile, and methyl cyanide is acetic nitrile. tmpzr1t_l9r_go_relaxed.owl nitrile metabolism biological_process owl:Class GO:0015147 biolink:NamedThing L-arabinose transmembrane transporter activity Enables the transfer of L-arabinose from one side of a membrane to the other. Arabinose occurs free, for example in the heartwood of many conifers and in the combined states, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides, etc. tmpzr1t_l9r_go_relaxed.owl L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity molecular_function owl:Class GO:0042900 biolink:NamedThing arabinose transmembrane transporter activity Enables the transfer of arabinose, a pentose monosaccharide that occurs in both D and L configurations, and as a polymer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033718 biolink:NamedThing pyranose dehydrogenase (acceptor) activity Catalysis of the reactions: pyranose + acceptor = 2-dehydropyranose (or 3-dehydropyranose or 2,3-didehydropyranose) + reduced acceptor, and a pyranoside + acceptor = a 3-dehydropyranoside (or 3,4-didehydropyranoside) + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl pyranose-quinone oxidoreductase activity|PDH|pyranose:acceptor oxidoreductase activity|pyranose dehydrogenase activity|quinone-dependent pyranose dehydrogenase activity MetaCyc:RXN-7965|MetaCyc:RXN-7962|MetaCyc:RXN-7966|EC:1.1.99.29|MetaCyc:RXN-7961|MetaCyc:RXN-7963 molecular_function owl:Class GO:1902599 biolink:NamedThing sulfathiazole transmembrane transport The directed movement of sulfathiazole across a membrane. tmpzr1t_l9r_go_relaxed.owl sulfathiazole transport|sulphathiazole transport pr 2013-12-20T11:08:28Z GO:0015906 biological_process owl:Class GO:0002509 biolink:NamedThing central tolerance induction to self antigen Tolerance induction in the central lymphoid organs directed at self antigens. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002508 biolink:NamedThing central tolerance induction Tolerance induction in the central lymphoid organs: the thymus and bone marrow. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050971 biolink:NamedThing detection of mechanical stimulus involved in magnetoreception The series of events involved in magnetoception in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field. tmpzr1t_l9r_go_relaxed.owl magnetoreception, detection of mechanical stimulus|magnetoception, sensory transduction of mechanical stimulus|magnetoreception, sensory detection of mechanical stimulus|sensory transduction of mechanical stimulus during magnetoreception|magnetoreception, sensory transduction of mechanical stimulus|sensory detection of mechanical stimulus during magnetoreception biological_process owl:Class GO:0003227 biolink:NamedThing right ventricular trabecular myocardium morphogenesis The process in which the anatomical structures of the right ventricular myocardium are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T10:50:59Z biological_process owl:Class GO:0003221 biolink:NamedThing right ventricular cardiac muscle tissue morphogenesis The process in which the anatomical structures of the right cardiac ventricle muscle are generated and organized. tmpzr1t_l9r_go_relaxed.owl right ventricle myocardium morphogenesis dph 2009-10-13T10:26:33Z biological_process owl:Class GO:0015816 biolink:NamedThing glycine transport The directed movement of glycine, aminoethanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015804 biolink:NamedThing neutral amino acid transport The directed movement of neutral amino acids, amino acids with no net charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009066 biolink:NamedThing aspartate family amino acid metabolic process The chemical reactions and pathways involving amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. tmpzr1t_l9r_go_relaxed.owl aspartate family amino acid metabolism biological_process owl:Class GO:1900059 biolink:NamedThing positive regulation of sulfate assimilation Any process that activates or increases the frequency, rate or extent of sulfate assimilation. tmpzr1t_l9r_go_relaxed.owl up regulation of sulfate assimilation|activation of sulfate assimilation|upregulation of sulfate assimilation|up-regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|up-regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor|up-regulation of sulfate assimilation|activation of sulphate assimilation|upregulation of sulphate assimilation|activation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|up regulation of sulphate assimilation|upregulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor|positive regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|up regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor|positive regulation of sulphate assimilation|up regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|positive regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor|up-regulation of sulphate assimilation|activation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor|upregulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor dph 2012-01-25T03:14:47Z biological_process owl:Class GO:1900058 biolink:NamedThing regulation of sulfate assimilation Any process that modulates the frequency, rate or extent of sulfate assimilation. tmpzr1t_l9r_go_relaxed.owl regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|regulation of sulphate assimilation|regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor dph 2012-01-25T03:14:40Z biological_process owl:Class GO:0006885 biolink:NamedThing regulation of pH Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. tmpzr1t_l9r_go_relaxed.owl hydrogen ion homeostasis biological_process owl:Class GO:0055067 biolink:NamedThing monovalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009089 biolink:NamedThing lysine biosynthetic process via diaminopimelate The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. tmpzr1t_l9r_go_relaxed.owl diaminopimelate pathway|diaminopimelic acid pathway|lysine formation via diaminopimelate|lysine biosynthetic process via diaminopimelic acid|lysine synthesis via diaminopimelate|lysine anabolism via diaminopimelate|lysine biosynthesis via diaminopimelic acid biological_process owl:Class GO:0009085 biolink:NamedThing lysine biosynthetic process The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl lysine biosynthesis|lysine anabolism|lysine synthesis|lysine formation MetaCyc:PWY-5097 biological_process owl:Class GO:0060715 biolink:NamedThing syncytiotrophoblast cell differentiation involved in labyrinthine layer development The process in which a chorionic trophoblast cell acquires specialized features of a syncytiotrophoblast of the labyrinthine layer of the placenta. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T08:56:18Z biological_process owl:Class GO:0060706 biolink:NamedThing cell differentiation involved in embryonic placenta development The process in which a relatively unspecialized cell acquires specialized features of the embryonic placenta. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T10:26:42Z biological_process owl:Class GO:0060319 biolink:NamedThing primitive erythrocyte differentiation Erythrocyte differentiation which occurs as part of the process of primitive hemopoiesis. tmpzr1t_l9r_go_relaxed.owl primitive RBC differentiation|primitive erythropoiesis|primitive red blood cell differentiation biological_process owl:Class GO:0000750 biolink:NamedThing pheromone-dependent signal transduction involved in conjugation with cellular fusion A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl transduction of mating signal GO:0007330|GO:0030454 biological_process owl:Class GO:0032005 biolink:NamedThing signal transduction involved in positive regulation of conjugation with cellular fusion The series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019346 biolink:NamedThing transsulfuration The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes. tmpzr1t_l9r_go_relaxed.owl transsulphuration|homocysteine-cysteine interconversion MetaCyc:PWY-801|Wikipedia:Transsulfuration_pathway biological_process owl:Class GO:0099152 biolink:NamedThing regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane Any process that modulates the frequency, rate or extent of the directed movement of neurotransmitter receptor from the postsynaptic endosome to the postsynaptic membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl dos 2017-08-25T15:01:11Z biological_process owl:Class GO:0002591 biolink:NamedThing positive regulation of antigen processing and presentation of peptide antigen via MHC class I Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl stimulation of antigen processing and presentation of peptide antigen via MHC class I|up-regulation of antigen processing and presentation of peptide antigen via MHC class I|up regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of peptide antigen processing and presentation via MHC class I|activation of antigen processing and presentation of peptide antigen via MHC class I|upregulation of antigen processing and presentation of peptide antigen via MHC class I biological_process owl:Class GO:0032230 biolink:NamedThing positive regulation of synaptic transmission, GABAergic Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA). tmpzr1t_l9r_go_relaxed.owl upregulation of synaptic transmission, GABAergic|activation of synaptic transmission, GABAergic|up regulation of synaptic transmission, GABAergic|up-regulation of synaptic transmission, GABAergic|stimulation of synaptic transmission, GABAergic biological_process owl:Class GO:0032228 biolink:NamedThing regulation of synaptic transmission, GABAergic Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051312 biolink:NamedThing chromosome decondensation The alteration of chromosome structure from the condensed form to a relaxed disperse form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051276 biolink:NamedThing chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome. tmpzr1t_l9r_go_relaxed.owl maintenance of genome integrity|nuclear genome maintenance|chromosome organisation|chromosome organization and biogenesis GO:0007001|GO:0051277 biological_process owl:Class GO:0007385 biolink:NamedThing specification of segmental identity, abdomen The specification of the characteristic structures of the abdominal segments following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035292 biolink:NamedThing specification of segmental identity, trunk The specification of the characteristic structures of trunk segments, following establishment of segment boundaries. In Drosophila, the trunk segments include thoracic segments and abdominal segments A1 to A8. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003376 biolink:NamedThing sphingosine-1-phosphate receptor signaling pathway A series of molecular signals initiated by the sphingolipid sphingosine-1-phosphate (S1P) binding to a receptor on the surface of the cell, and which proceeds with the activated receptor transmitting the signal by promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl sphingolipid signalling pathway|sphingolipid signaling pathway|S1P-activated G-protein coupled receptor signaling pathway|S1P-activated GPCR signaling pathway|S1P-stimulated signal transduction pathway|S1P receptor signaling pathway|S1P signaling pathway https://github.com/geneontology/go-ontology/issues/15822 dph 2009-12-09T06:30:12Z GO:0001789 biological_process owl:Class GO:0007186 biolink:NamedThing G protein-coupled receptor signaling pathway A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane. tmpzr1t_l9r_go_relaxed.owl dimeric G-protein coupled receptor signalling pathway|GPCR signaling pathway|G-protein coupled receptor protein signal transduction|dimeric G-protein coupled receptor signaling pathway|GPCR signalling pathway|G protein coupled receptor protein signaling pathway|G-protein coupled receptor protein signaling pathway|G-protein coupled receptor signaling pathway via GPCR dimer|G-protein coupled receptor signalling pathway|G protein coupled receptor protein signalling pathway|G-protein-coupled receptor protein signalling pathway GO:0038042 biological_process owl:Class GO:0030512 biolink:NamedThing negative regulation of transforming growth factor beta receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of transforming growth factor beta receptor signaling pathway|down regulation of transforming growth factor beta receptor signaling pathway|negative regulation of TGFbeta receptor signaling pathway|inhibition of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signalling pathway|down-regulation of transforming growth factor beta receptor signaling pathway|negative regulation of TGF-beta receptor signaling pathway biological_process owl:Class GO:1900373 biolink:NamedThing positive regulation of purine nucleotide biosynthetic process Any process that activates or increases the frequency, rate or extent of purine nucleotide biosynthetic processes. tmpzr1t_l9r_go_relaxed.owl upregulation of purine nucleotide biosynthesis|positive regulation of purine nucleotide formation|activation of purine nucleotide synthesis|upregulation of purine nucleotide synthesis|up regulation of purine nucleotide anabolism|up regulation of purine nucleotide biosynthetic process|up-regulation of purine nucleotide biosynthesis|up regulation of purine nucleotide formation|up-regulation of purine nucleotide synthesis|positive regulation of purine nucleotide synthesis|activation of purine nucleotide biosynthetic process|activation of purine nucleotide anabolism|positive regulation of purine nucleotide anabolism|up-regulation of purine nucleotide formation|upregulation of purine nucleotide biosynthetic process|activation of purine nucleotide biosynthesis|up regulation of purine nucleotide biosynthesis|positive regulation of purine nucleotide biosynthesis|upregulation of purine nucleotide anabolism|up-regulation of purine nucleotide anabolism|up-regulation of purine nucleotide biosynthetic process|activation of purine nucleotide formation|upregulation of purine nucleotide formation|up regulation of purine nucleotide synthesis krc 2012-04-17T12:32:37Z biological_process owl:Class GO:0007144 biolink:NamedThing female meiosis I The cell cycle process in which the first meiotic division occurs in the female germline. tmpzr1t_l9r_go_relaxed.owl female meiosis I nuclear division biological_process owl:Class GO:0007143 biolink:NamedThing female meiotic nuclear division A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the female germline. tmpzr1t_l9r_go_relaxed.owl female meiotic division|female meiosis Note that female germ lines can be found in female or hermaphroditic organisms, so this term can be used to annotate gene products from hermaphrodites such as those of C. elegans. See also the biological process term 'meiotic nuclear division; GO:0140013'. biological_process owl:Class GO:0075222 biolink:NamedThing sporangium germination The physiological, developmental and morphological changes that occur in a symbiont sporangium following release from dormancy up to the earliest signs of growth. A sporangium is a structure producing and containing spores. tmpzr1t_l9r_go_relaxed.owl germination of symbiont sporangium on or near host|direct germination on or near host|symbiont sporangium germination on or near host|sporangium germination on or near host biological_process owl:Class GO:0043582 biolink:NamedThing sporangium development The process whose specific outcome is the progression of the sporangium over time, from its formation to the mature structure. A sporangium is a structure producing and containing spores. tmpzr1t_l9r_go_relaxed.owl sporangia development biological_process owl:Class GO:0090336 biolink:NamedThing positive regulation of brown fat cell differentiation Any process that increases the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:19:26Z biological_process owl:Class GO:0045600 biolink:NamedThing positive regulation of fat cell differentiation Any process that activates or increases the frequency, rate or extent of adipocyte differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of adipocyte cell differentiation|upregulation of fat cell differentiation|stimulation of fat cell differentiation|up-regulation of fat cell differentiation|activation of fat cell differentiation|up regulation of fat cell differentiation|positive regulation of adipocyte differentiation biological_process owl:Class GO:0033076 biolink:NamedThing isoquinoline alkaloid metabolic process The chemical reactions and pathways involving isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin. tmpzr1t_l9r_go_relaxed.owl ipecac alkaloid metabolism|isoquinoline alkaloid metabolism biological_process owl:Class GO:0120302 biolink:NamedThing background adaptation Any process in which an organism changes its pigmentation (lightening in response to a brighter environment or darkening in response to a dimmer environment) in response to a change in light intensity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20524 krc 2021-02-09T18:11:11Z biological_process owl:Class GO:0033240 biolink:NamedThing positive regulation of cellular amine metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amines. tmpzr1t_l9r_go_relaxed.owl positive regulation of amine metabolism biological_process owl:Class GO:1903826 biolink:NamedThing L-arginine transmembrane transport The directed movement of L-arginine across a membrane. tmpzr1t_l9r_go_relaxed.owl L-arginine transport|L-arginine uptake|arginine transport|L-arginine import|arginine transmembrane transport https://github.com/geneontology/go-ontology/issues/22228 vw 2015-01-20T10:38:15Z GO:1902023|GO:0043091|GO:0015809|GO:1903400 biological_process owl:Class GO:0035774 biolink:NamedThing positive regulation of insulin secretion involved in cellular response to glucose stimulus Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose. tmpzr1t_l9r_go_relaxed.owl positive regulation of insulin secretion in response to glucose bf 2011-04-01T01:49:09Z biological_process owl:Class GO:0061178 biolink:NamedThing regulation of insulin secretion involved in cellular response to glucose stimulus Any process that modulates the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose. tmpzr1t_l9r_go_relaxed.owl regulation of insulin secretion in response to glucose dph 2010-07-13T09:38:42Z biological_process owl:Class GO:0090035 biolink:NamedThing positive regulation of chaperone-mediated protein complex assembly Any process that increases the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:15:25Z biological_process owl:Class GO:0050164 biolink:NamedThing oxoglutarate dehydrogenase (NADP+) activity Catalysis of the reaction: 2-oxoglutarate + CoA + NADP(+) = CO(2) + NADPH + succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate:NADP+ 2-oxidoreductase (CoA-succinylating) KEGG_REACTION:R00265|MetaCyc:OXOGLUTARATE-DEHYDROGENASE-NADP+-RXN|RHEA:21400|EC:1.2.1.52 molecular_function owl:Class GO:0034601 biolink:NamedThing oxoglutarate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: 2-oxoglutarate + CoA + NAD(P)+ = succinyl-CoA + CO2 + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.52 molecular_function owl:Class GO:0046007 biolink:NamedThing negative regulation of activated T cell proliferation Any process that stops, prevents or reduces the rate or extent of activated T cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of activated T-cell proliferation|down regulation of activated T cell proliferation|down-regulation of activated T cell proliferation|negative regulation of activated T lymphocyte proliferation|downregulation of activated T cell proliferation|negative regulation of activated T-lymphocyte proliferation|inhibition of activated T cell proliferation biological_process owl:Class GO:0033605 biolink:NamedThing positive regulation of catecholamine secretion Any process that activates or increases the frequency, rate or extent of the regulated release of a catecholamine. tmpzr1t_l9r_go_relaxed.owl upregulation of catecholamine secretion|stimulation of catecholamine secretion|up regulation of catecholamine secretion|up-regulation of catecholamine secretion|activation of catecholamine secretion biological_process owl:Class GO:0021642 biolink:NamedThing trochlear nerve formation The process that gives rise to the trochlear nerve. This process pertains to the initial formation of a structure from unspecified parts. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle. tmpzr1t_l9r_go_relaxed.owl CN IV formation|CN IV biosynthesis biological_process owl:Class GO:2000225 biolink:NamedThing negative regulation of testosterone biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of testosterone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl yaf 2010-11-09T10:38:37Z biological_process owl:Class GO:1901581 biolink:NamedThing negative regulation of telomeric RNA transcription from RNA pol II promoter Any process that stops, prevents or reduces the frequency, rate or extent of telomeric RNA transcription from RNA pol II promoter. tmpzr1t_l9r_go_relaxed.owl inhibition of telomeric RNA transcription from RNA pol II promoter|down regulation of telomeric RNA transcription from RNA pol II promoter|downregulation of telomeric RNA transcription from Pol II promoter|negative regulation of telomeric RNA transcription from Pol II promoter|inhibition of telomeric RNA transcription from Pol II promoter|down regulation of telomeric RNA transcription from Pol II promoter|down-regulation of telomeric RNA transcription from RNA pol II promoter|downregulation of telomeric RNA transcription from RNA pol II promoter|down-regulation of telomeric RNA transcription from Pol II promoter al 2012-11-06T11:07:21Z biological_process owl:Class GO:1901580 biolink:NamedThing regulation of telomeric RNA transcription from RNA pol II promoter Any process that modulates the frequency, rate or extent of telomeric RNA transcription from RNA pol II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of telomeric RNA transcription from Pol II promoter al 2012-11-06T11:07:16Z biological_process owl:Class GO:0047545 biolink:NamedThing 2-hydroxyglutarate dehydrogenase activity Catalysis of the reaction: (S)-2-hydroxyglutarate + acceptor = 2-oxoglutarate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl hydroxyglutaric dehydrogenase activity|(S)-2-hydroxyglutarate:(acceptor) 2-oxidoreductase|alpha-hydroxyglutarate dehydrogenase activity|L-alpha-hydroxyglutarate dehydrogenase activity|(S)-2-hydroxyglutarate:acceptor 2-oxidoreductase|alpha-hydroxyglutarate dehydrogenase (NAD+ specific)|L-alpha-hydroxyglutarate:NAD+ 2-oxidoreductase|alpha-hydroxyglutarate oxidoreductase activity EC:1.1.99.2|RHEA:21252|MetaCyc:2-HYDROXYGLUTARATE-DEHYDROGENASE-RXN|Reactome:R-HSA-880050 molecular_function owl:Class GO:0034858 biolink:NamedThing 2-hydroxybenzothiazole monooxygenase activity Catalysis of the reaction: 2-hydroxybenzothiazole + 1/2 O2 = 2,6-dihydroxybenzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1291 molecular_function owl:Class GO:0048332 biolink:NamedThing mesoderm morphogenesis The process in which the anatomical structures of the mesoderm are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048729 biolink:NamedThing tissue morphogenesis The process in which the anatomical structures of a tissue are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033103 biolink:NamedThing protein secretion by the type VI secretion system The process in which proteins are transferred into the extracellular milieu or directly into host cells by the type VI secretion system. Proteins secreted by this system do not require an N-terminal signal sequence. tmpzr1t_l9r_go_relaxed.owl type VI protein secretion system|protein secretion by the type VI protein secretion system|protein secretion by the T6SS Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular component term 'type VI protein secretion system complex ; GO:0033104'. biological_process owl:Class GO:1901737 biolink:NamedThing (R)-mevalonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of (R)-mevalonic acid. tmpzr1t_l9r_go_relaxed.owl (R)-mevalonate biosynthesis|(R)-mevalonate synthesis|(R)-mevalonic acid anabolism|(R)-mevalonate anabolism|(R)-mevalonic acid formation|(R)-mevalonic acid biosynthesis|(R)-mevalonic acid synthesis yaf 2013-01-11T11:25:59Z biological_process owl:Class GO:1905541 biolink:NamedThing regulation of L-arginine import across plasma membrane Any process that modulates the frequency, rate or extent of L-arginine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of L-arginine import|regulation of L-arginine import into cell https://github.com/geneontology/go-ontology/issues/22228 2014-03-31T14:30:40Z GO:0010963|GO:1902826 biological_process owl:Class GO:0022026 biolink:NamedThing epidermal growth factor signaling pathway involved in forebrain neuron fate commitment The series of molecular signals generated as a consequence of a epidermal growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl epidermal growth factor signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:0007173 biolink:NamedThing epidermal growth factor receptor signaling pathway A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ERBB1 signaling pathway|EGF receptor signaling pathway|receptor tyrosine-protein kinase erbB-1 signaling pathway|epidermal growth factor receptor signalling pathway|EGF receptor signalling pathway|EGFR signaling pathway biological_process owl:Class GO:0030700 biolink:NamedThing glycine reductase complex Complex that possesses glycine reductase activity; usually comprises three subunits, of which two are selenoproteins; the subunits are typically designated selenoprotein A, selenoprotein B and protein C. tmpzr1t_l9r_go_relaxed.owl Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'glycine reductase activity ; GO:0030699'. cellular_component owl:Class GO:0016241 biolink:NamedThing regulation of macroautophagy Any process that modulates the frequency, rate or extent of macroautophagy. tmpzr1t_l9r_go_relaxed.owl regulation of starvation-induced autophagy biological_process owl:Class GO:0006644 biolink:NamedThing phospholipid metabolic process The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl phospholipid metabolism biological_process owl:Class GO:0034731 biolink:NamedThing Lsm-containing SMN-Sm protein complex An SMN-Sm protein complex formed by the association of the methylated Sm proteins B/B', D3, E, F, and G, and Lsm10 and Lsm11, with the SMN complex. This complex forms Sm cores on U7 snRNA. tmpzr1t_l9r_go_relaxed.owl SMN-containing protein complex cellular_component owl:Class GO:0034719 biolink:NamedThing SMN-Sm protein complex A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl SMN-containing protein complex Note that this complex is sometimes referred to as the 'SMN complex', but it should not be confused with GO:0032797. cellular_component owl:Class GO:2001003 biolink:NamedThing regulation of pectin catabolic process Any process that modulates the frequency, rate or extent of pectin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of pectin catabolism|regulation of pectin breakdown|regulation of pectin degradation tt 2011-08-08T03:24:01Z biological_process owl:Class GO:0032881 biolink:NamedThing regulation of polysaccharide metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving polysaccharides. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003886 biolink:NamedThing DNA (cytosine-5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleic methylase activity|S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase activity|cytosine DNA methyltransferase activity|site-specific DNA-methyltransferase (cytosine-specific) activity|DNA cytosine C5 methylase activity|DNA cytosine methylase activity|restriction-modification system activity|DNA-cytosine methyltransferase activity|DNA cytosine C(5) methylase activity|DNA-cytosine 5-methylase activity|cytosine DNA methylase activity|DNA 5-cytosine methylase activity|cytosine-specific DNA methyltransferase activity|deoxyribonucleic (cytosine-5-)-methyltransferase activity|methylphosphotriester-DNA methyltransferase activity|type II DNA methylase activity|deoxyribonucleic acid (cytosine-5-)-methyltransferase activity|cytosine 5-methyltransferase activity|modification methylase activity MetaCyc:2.1.1.73-RXN|RHEA:13681|EC:2.1.1.37 Note that EC:2.1.1.73 was deleted from EC as the reaction is performed by DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37). GO:0008326 molecular_function owl:Class GO:0009008 biolink:NamedThing DNA-methyltransferase activity Catalysis of the transfer of a methyl group to a DNA molecule. tmpzr1t_l9r_go_relaxed.owl Type II DNA methylase|DNA methyltransferase activity|deoxyribonucleic acid modification methylase activity|deoxyribonucleic acid methylase activity|deoxyribonucleate methylase activity|DNA methylase|DNA transmethylase activity|deoxyribonucleate methyltransferase activity|deoxyribonucleic acid methyltransferase activity Reactome:R-HSA-5227490 molecular_function owl:Class GO:0140683 biolink:NamedThing histone H3-di/monomethyl-lysine-9 demethylase activity Catalysis of the removal of a methyl group from a di or a monomethyl-lysine residue at position 9 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3K9me2 demethylase activity|histone H3K9me demethylase activity https://github.com/geneontology/go-ontology/issues/21089 EC:1.14.11.65|RHEA:60188 pg 2021-07-09T06:03:06Z molecular_function owl:Class GO:0016750 biolink:NamedThing O-succinyltransferase activity Catalysis of the transfer of a succinyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0150079 biolink:NamedThing negative regulation of neuroinflammatory response Any process that stops, prevents or reduces the frequency, rate or extent of neuroinflammatory response. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-26T12:38:08Z biological_process owl:Class GO:1901591 biolink:NamedThing regulation of double-strand break repair via break-induced replication Any process that modulates the frequency, rate or extent of double-strand break repair via break-induced replication. tmpzr1t_l9r_go_relaxed.owl al 2012-11-07T16:37:34Z biological_process owl:Class GO:0061544 biolink:NamedThing peptide secretion, neurotransmission The controlled release of a peptide from a cell in which the peptide acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-25T09:10:10Z biological_process owl:Class GO:1900027 biolink:NamedThing regulation of ruffle assembly Any process that modulates the frequency, rate or extent of ruffle assembly. tmpzr1t_l9r_go_relaxed.owl regulation of membrane ruffling|regulation of membrane ruffle formation yaf 2012-01-12T05:00:49Z biological_process owl:Class GO:0004085 biolink:NamedThing butyryl-CoA dehydrogenase activity Catalysis of the reaction: butanoyl-CoA + electron-transfer flavoprotein = 2-butenoyl-CoA + reduced electron-transfer flavoprotein. tmpzr1t_l9r_go_relaxed.owl short-chain acyl CoA dehydrogenase activity|unsaturated acyl-CoA reductase activity|short-chain-acyl-CoA dehydrogenase activity|butanoyl-CoA:acceptor 2,3-oxidoreductase activity|butyryl coenzyme A dehydrogenase activity|3-hydroxyacyl CoA reductase activity|short-chain acyl-coenzyme A dehydrogenase activity|unsaturated acyl coenzyme A reductase activity|enoyl-coenzyme A reductase activity|butyryl dehydrogenase activity|ethylene reductase activity|butanoyl-CoA:(acceptor) 2,3-oxidoreductase activity UM-BBD_reactionID:r0013|MetaCyc:BUTYRYL-COA-DEHYDROGENASE-RXN|EC:1.3.8.1|KEGG_REACTION:R01178 molecular_function owl:Class GO:0052890 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a flavin. tmpzr1t_l9r_go_relaxed.owl EC:1.3.8.- molecular_function owl:Class GO:0039595 biolink:NamedThing induction by virus of catabolism of host mRNA The process in which a virus increases the frequency, rate or extent of the breakdown of host messenger RNA (mRNA). tmpzr1t_l9r_go_relaxed.owl virus-mediated mRNA decay|viral induction of host mRNA decay|induction by virus of host mRNA catabolic process|induction of host mRNA decay|promotion of host mRNA degradation VZ:901 bf 2012-07-04T03:14:04Z biological_process owl:Class GO:0039656 biolink:NamedThing modulation by virus of host gene expression The process in which a virus effects a change in gene expression in its host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host gene expression bf 2013-06-20T15:28:26Z biological_process owl:Class GO:0050246 biolink:NamedThing questin monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + questin = demethylsulochrin + NADP(+). tmpzr1t_l9r_go_relaxed.owl questin,NADPH:oxygen oxidoreductase (hydroxylating, anthraquinone-ring-opening)|questin oxygenase activity RHEA:10836|EC:1.14.13.43|MetaCyc:QUESTIN-MONOOXYGENASE-RXN|KEGG_REACTION:R02417 molecular_function owl:Class GO:2000011 biolink:NamedThing regulation of adaxial/abaxial pattern formation Any process that modulates the frequency, rate or extent of adaxial/abaxial pattern formation. tmpzr1t_l9r_go_relaxed.owl regulation of adaxial/abaxial pattern specification tb 2010-08-05T11:20:22Z biological_process owl:Class GO:0102307 biolink:NamedThing erythromycin C 3''-o-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + erythromycin C <=> S-adenosyl-L-homocysteine + erythromycin A + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.254|MetaCyc:RXN-12923|RHEA:32647 molecular_function owl:Class GO:1902201 biolink:NamedThing negative regulation of bacterial-type flagellum-dependent cell motility Any process that stops, prevents or reduces the frequency, rate or extent of bacterial-type flagellum-dependent cell motility. tmpzr1t_l9r_go_relaxed.owl inhibition of bacterial-type flagellar cell motility|down regulation of flagellin-based flagellar cell motility|down regulation of bacterial-type flagellar cell motility|down-regulation of bacterial-type flagellar cell motility|inhibition of flagellin-based flagellar cell motility|downregulation of flagellin-based flagellar cell motility|negative regulation of bacterial-type flagellar cell motility|down-regulation of flagellin-based flagellar cell motility|downregulation of bacterial-type flagellar cell motility|negative regulation of flagellin-based flagellar cell motility jl 2013-06-06T14:58:41Z biological_process owl:Class GO:2000394 biolink:NamedThing positive regulation of lamellipodium morphogenesis Any process that activates or increases the frequency, rate or extent of lamellipodium morphogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of lamellipodium organization mah 2011-02-22T11:19:45Z biological_process owl:Class GO:1902745 biolink:NamedThing positive regulation of lamellipodium organization Any process that activates or increases the frequency, rate or extent of lamellipodium organization. tmpzr1t_l9r_go_relaxed.owl up regulation of lamellipodium organization|up-regulation of lamellipodium organization|activation of lamellipodium organization|upregulation of lamellipodium organization als 2014-02-28T16:27:49Z biological_process owl:Class GO:1905646 biolink:NamedThing positive regulation of FACT complex assembly Any process that activates or increases the frequency, rate or extent of FACT complex assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of FACT complex assembly|activation of FACT complex formation|up regulation of FACT complex formation|positive regulation of FACT complex formation|up regulation of Facilitates chromatin transcription complex formation|up-regulation of FACT complex assembly|upregulation of FACT complex formation|activation of FACT complex assembly|up regulation of FACT complex assembly|positive regulation of Facilitates chromatin transcription complex assembly|upregulation of Facilitates chromatin transcription complex assembly|up-regulation of Facilitates chromatin transcription complex assembly|activation of Facilitates chromatin transcription complex formation|up regulation of Facilitates chromatin transcription complex assembly|up-regulation of FACT complex formation|upregulation of Facilitates chromatin transcription complex formation|up-regulation of Facilitates chromatin transcription complex formation|activation of Facilitates chromatin transcription complex assembly|positive regulation of Facilitates chromatin transcription complex formation pga 2016-11-07T09:14:21Z biological_process owl:Class GO:0033632 biolink:NamedThing regulation of cell-cell adhesion mediated by integrin Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl regulation of cell-cell adhesion mediated by integrin complex biological_process owl:Class GO:0022407 biolink:NamedThing regulation of cell-cell adhesion Any process that modulates the frequency, rate or extent of attachment of a cell to another cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001092 biolink:NamedThing TFIIA-class transcription factor complex binding Binding to a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor. tmpzr1t_l9r_go_relaxed.owl TFIIA-class transcription factor binding krc 2010-10-28T02:37:19Z molecular_function owl:Class GO:0034157 biolink:NamedThing positive regulation of toll-like receptor 7 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 7 signalling pathway|positive regulation of TLR7 signaling pathway biological_process owl:Class GO:0070735 biolink:NamedThing protein-glycine ligase activity Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target protein. tmpzr1t_l9r_go_relaxed.owl protein glycylase activity Reactome:R-HSA-8867370 mah 2009-06-19T01:51:21Z molecular_function owl:Class GO:0140321 biolink:NamedThing negative regulation by symbiont of host autophagy Any process in which a symbiont organism decreases the frequency, rate or extent of autophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pg 2019-04-03T09:21:48Z biological_process owl:Class GO:0075071 biolink:NamedThing modulation by symbiont of host autophagy Any process in which a symbiont organism modulates the frequency, rate or extent of autophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host autophagic process|autophagy involved in symbiotic interaction|autophagy during symbiotic interaction biological_process owl:Class GO:0019272 biolink:NamedThing L-alanine biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of alanine from other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl L-alanine formation from pyruvate|L-alanine anabolism from pyruvate|L-alanine synthesis from pyruvate MetaCyc:ALANINE-VALINESYN-PWY|MetaCyc:ALANINE-SYN2-PWY biological_process owl:Class GO:0009339 biolink:NamedThing glycolate oxidase complex An enzyme complex that catalyzes the oxidation of 2-hydroxy acid to form 2-oxo acid and hydrogen peroxide (H2O2). The enzyme is a flavoprotein (FMN). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010214 biolink:NamedThing seed coat development The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061272 biolink:NamedThing mesonephric connecting tubule development The process whose specific outcome is the progression of the mesonephric connecting tubule over time, from its formation to the mature structure. The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros. tmpzr1t_l9r_go_relaxed.owl mesonephric connecting duct development|mesonephric collecting tubule development dph 2010-09-02T12:00:56Z biological_process owl:Class GO:0061242 biolink:NamedThing mesonephric nephron tubule development The progression of a mesonephric nephron tubule over time, from its initial formation to the mature structure. A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:17:00Z biological_process owl:Class GO:1990178 biolink:NamedThing HU-DNA complex A protein-DNA complex that consists of HU heterodimers (an alpha and a beta chain) assembled into octamers along DNA. HU binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure. tmpzr1t_l9r_go_relaxed.owl HU complex bhm 2013-08-30T13:06:53Z cellular_component owl:Class GO:0102461 biolink:NamedThing kaempferol 3-sophoroside 7-O-rhamnosyltransferase activity Catalysis of the reaction: kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside + UDP-L-rhamnose <=> kaempferol 3-O-rhamnosyl(1->2)glucoside-7-O-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14009 molecular_function owl:Class GO:0120163 biolink:NamedThing negative regulation of cold-induced thermogenesis Any process that stops, prevents, or reduces the rate of cold-induced thermogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of CIT krc 2018-05-14T17:18:59Z biological_process owl:Class GO:0003093 biolink:NamedThing regulation of glomerular filtration Any process that modulates the frequency, rate or extent of glomerular filtration. Glomerular filtration is the process in which blood is filtered by the glomerulus into the renal tubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060980 biolink:NamedThing cell migration involved in coronary vasculogenesis The orderly movement of a cell from one site to another that will contribute to the differentiation of an endothelial cell that will form the blood vessels of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T02:33:06Z biological_process owl:Class GO:0035441 biolink:NamedThing cell migration involved in vasculogenesis The orderly movement of a cell from one site to another that will contribute to the differentiation of an endothelial cell that will form de novo blood vessels and tubes. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-09T03:53:01Z biological_process owl:Class GO:0097176 biolink:NamedThing epoxide metabolic process The chemical reactions and pathways involving epoxides, compounds in which an oxygen atom is directly attached to two adjacent or non-adjacent carbon atoms of a carbon chain or ring system; thus cyclic ethers. tmpzr1t_l9r_go_relaxed.owl epoxide metabolism pr 2011-10-10T11:29:49Z biological_process owl:Class GO:0018410 biolink:NamedThing C-terminal protein amino acid modification The alteration of the C-terminal amino acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl peptide/protein carboxyl-terminal blocking|peptide or protein carboxyl-terminal blocking biological_process owl:Class GO:0003306 biolink:NamedThing Wnt signaling pathway involved in heart development The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl Wnt-activated signaling pathway involved in heart development|Wnt receptor signalling pathway involved in heart development|Wnt receptor signaling pathway involved in heart development dph 2009-10-22T12:26:07Z biological_process owl:Class GO:0061311 biolink:NamedThing cell surface receptor signaling pathway involved in heart development Any series of molecular signals initiated by the binding of a receptor on the surface of a cell to a physiological ligand, which contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl cell surface receptor linked signaling pathway involved in heart development|cell surface receptor linked signalling pathway involved in heart development dph 2010-09-23T09:18:32Z biological_process owl:Class GO:0006914 biolink:NamedThing autophagy The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Autophagy_(cellular) GO:0016238 biological_process owl:Class GO:1901369 biolink:NamedThing cyclic 2,3-bisphospho-D-glycerate biosynthetic process The chemical reactions and pathways resulting in the formation of cyclic 2,3-bisphospho-D-glyceric acid. tmpzr1t_l9r_go_relaxed.owl cyclic 2,3-bisphospho-D-glyceric acid synthesis|cyclic 2,3-bisphospho-D-glyceric acid biosynthesis|cyclic 2,3-bisphospho-D-glyceric acid anabolism|cDPG biosynthesis|cyclic 2,3-bisphospho-D-glyceric acid biosynthetic process|cyclic 2,3-bisphospho-D-glyceric acid formation|cyclic 2,3-diphosphoglycerate biosynthesis bf 2012-09-19T14:17:57Z biological_process owl:Class GO:0022406 biolink:NamedThing membrane docking The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001249 biolink:NamedThing negative regulation of ammonia assimilation cycle Any process that stops, prevents or reduces the frequency, rate or extent of ammonia assimilation cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of glutamate metabolism via glutamine and ammonia|negative regulation of glutamate metabolic process via glutamine and ammonia rl 2011-12-01T10:08:29Z biological_process owl:Class GO:0045847 biolink:NamedThing negative regulation of nitrogen utilization Any process that stops, prevents, or reduces the frequency, rate or extent of nitrogen utilization. tmpzr1t_l9r_go_relaxed.owl down-regulation of nitrogen utilization|downregulation of nitrogen utilization|down regulation of nitrogen utilization|inhibition of nitrogen utilization biological_process owl:Class GO:0055020 biolink:NamedThing positive regulation of cardiac muscle fiber development Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle fiber development. tmpzr1t_l9r_go_relaxed.owl positive regulation of cardiac muscle fibre development|upregulation of cardiac muscle fiber development|up regulation of cardiac muscle fiber development|positive regulation of heart muscle fiber development|activation of cardiac muscle fiber development|up-regulation of cardiac muscle fiber development|stimulation of cardiac muscle fiber development biological_process owl:Class GO:2000727 biolink:NamedThing positive regulation of cardiac muscle cell differentiation Any process that activates or increases the frequency, rate or extent of cardiac muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart muscle cell differentiation|positive regulation of cardiomyocyte differentiation vk 2011-06-08T10:51:15Z biological_process owl:Class GO:1905326 biolink:NamedThing positive regulation of meiosis I spindle assembly checkpoint Any process that activates or increases the frequency, rate or extent of the meiosis I spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl up regulation of meiosis I spindle assembly checkpoint|activation of meiosis I spindle assembly checkpoint|upregulation of meiosis I spindle assembly checkpoint|up-regulation of meiosis I spindle assembly checkpoint mah 2016-07-20T12:48:47Z biological_process owl:Class GO:0044753 biolink:NamedThing amphisome Intermediate organelles formed during macroautophagy through the fusion between autophagosomes and endosomes. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-27T15:35:25Z cellular_component owl:Class GO:0005776 biolink:NamedThing autophagosome A double-membrane-bounded compartment that engulfs endogenous cellular material as well as invading microorganisms to target them to the lytic vacuole/lysosome for degradation as part of macroautophagy. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole|initial autophagic vacuole NIF_Subcellular:sao8663416959 cellular_component owl:Class GO:1901518 biolink:NamedThing aspyridone A biosynthetic process The chemical reactions and pathways resulting in the formation of aspyridone A. tmpzr1t_l9r_go_relaxed.owl aspyridone A anabolism|aspyridone A synthesis|aspyridone A formation|aspyridone A biosynthesis di 2012-10-18T18:31:36Z biological_process owl:Class GO:1901516 biolink:NamedThing aspyridone A metabolic process The chemical reactions and pathways involving aspyridone A. tmpzr1t_l9r_go_relaxed.owl aspyridone A metabolism di 2012-10-18T18:31:28Z biological_process owl:Class GO:0018156 biolink:NamedThing peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine The formation of a protein-protein cross-link between peptidyl-threonine and peptidyl-cysteine by the synthesis of (2S,3S,6R)-3-methyl-lanthionine (3-methyl-L-lanthionine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0112 biological_process owl:Class GO:0045736 biolink:NamedThing negative regulation of cyclin-dependent protein serine/threonine kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000079 biolink:NamedThing regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of cyclin-dependent protein kinase activity|regulation of CDK activity biological_process owl:Class GO:0070153 biolink:NamedThing mitochondrial leucyl-tRNA aminoacylation The process of coupling leucine to leucyl-tRNA in a mitochondrion, catalyzed by leucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905587 biolink:NamedThing positive regulation of outer hair cell apoptotic process Any process that activates or increases the frequency, rate or extent of outer hair cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of outer hair cell apoptosis|positive regulation of outer hair cell apoptosis|up-regulation of outer hair cell apoptotic process|up-regulation of cochlear outer hair cell apoptosis|upregulation of cochlear outer hair cell apoptosis|positive regulation of cochlear outer hair cell apoptosis|up-regulation of cochlear outer hair cell apoptotic process|activation of cochlear outer hair cell apoptosis|upregulation of outer hair cell apoptosis|upregulation of outer hair cell apoptotic process|up regulation of cochlear outer hair cell apoptosis|up regulation of outer hair cell apoptotic process|up regulation of cochlear outer hair cell apoptotic process|positive regulation of cochlear outer hair cell apoptotic process|activation of cochlear outer hair cell apoptotic process|up regulation of outer hair cell apoptosis|activation of outer hair cell apoptosis|upregulation of cochlear outer hair cell apoptotic process|activation of outer hair cell apoptotic process sl 2016-10-24T22:35:51Z biological_process owl:Class GO:0031540 biolink:NamedThing regulation of anthocyanin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. tmpzr1t_l9r_go_relaxed.owl regulation of anthocyanin anabolism|regulation of anthocyanin formation|regulation of anthocyanin synthesis|regulation of anthocyanin biosynthesis biological_process owl:Class GO:0009962 biolink:NamedThing regulation of flavonoid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. tmpzr1t_l9r_go_relaxed.owl regulation of flavonoid anabolism|regulation of flavonoid biosynthesis|regulation of flavonoid formation|regulation of flavonoid synthesis biological_process owl:Class GO:0050765 biolink:NamedThing negative regulation of phagocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of phagocytosis. tmpzr1t_l9r_go_relaxed.owl downregulation of phagocytosis|down regulation of phagocytosis|inhibition of phagocytosis|down-regulation of phagocytosis biological_process owl:Class GO:0003279 biolink:NamedThing cardiac septum development The progression of a cardiac septum over time, from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl heart septum development dph 2009-10-20T09:45:13Z biological_process owl:Class GO:0008673 biolink:NamedThing 2-dehydro-3-deoxygluconokinase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxygluconokinase (phosphorylating)|3-deoxy-2-oxo-D-gluconate kinase activity|ketodeoxygluconokinase activity|2-keto-3-deoxy-D-gluconic acid kinase activity|2-keto-3-deoxygluconokinase activity|2-keto-3-deoxygluconate kinase activity|KDG kinase activity|ATP:2-dehydro-3-deoxy-D-gluconate 6-phosphotransferase activity KEGG_REACTION:R01541|EC:2.7.1.45|RHEA:14797|MetaCyc:DEOXYGLUCONOKIN-RXN molecular_function owl:Class GO:0061156 biolink:NamedThing pulmonary artery morphogenesis The process in which the anatomical structures of the pulmonary artery are generated and organized. The pulmonary artery is the artery that carries blood from the heart to the lungs. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-15T09:13:47Z biological_process owl:Class GO:1901327 biolink:NamedThing response to tacrolimus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tacrolimus stimulus. tmpzr1t_l9r_go_relaxed.owl response to FK506|response to tacrolimus hydrate mah 2012-08-30T10:14:40Z biological_process owl:Class GO:2000523 biolink:NamedThing regulation of T cell costimulation Any process that modulates the frequency, rate or extent of T cell costimulation. tmpzr1t_l9r_go_relaxed.owl regulation of T-lymphocyte costimulation|regulation of T-cell co-stimulation|regulation of T lymphocyte costimulation|regulation of T cell co-stimulation|regulation of T-cell costimulation ebc 2011-03-23T10:23:24Z biological_process owl:Class GO:1903037 biolink:NamedThing regulation of leukocyte cell-cell adhesion Any process that modulates the frequency, rate or extent of leukocyte cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl regulation of leukocyte adhesion|regulation of leukocyte cell adhesion Exogenous expression of ASS1 or NOS3 in HUVECs enhances NO production and inhibits monocyte adhesion rl 2014-05-19T15:29:58Z biological_process owl:Class GO:0070930 biolink:NamedThing trans-translation-dependent protein tagging A protein modification process in which a polypeptide is added to a nascent polypeptide cotranslationally by trans-translation. tmpzr1t_l9r_go_relaxed.owl protein modification by trans-translation|co-translational protein tagging|cotranslational protein tagging Note that this term is not a child of 'co-translational protein modification process ; GO:0043686' because co-translational protein modification implies modification of a previously incorporated amino acid in a nascent chain, rather than addition of new sequence to the C-terminus. mah 2009-09-16T04:10:49Z biological_process owl:Class GO:1905358 biolink:NamedThing positive regulation of snRNA pseudouridine synthesis Any process that activates or increases the frequency, rate or extent of snRNA pseudouridine synthesis. tmpzr1t_l9r_go_relaxed.owl upregulation of snRNA pseudouridine synthesis|up regulation of snRNA pseudouridine synthesis|activation of snRNA pseudouridine synthesis|up-regulation of snRNA pseudouridine synthesis se 2016-08-09T19:12:42Z biological_process owl:Class GO:0150054 biolink:NamedThing regulation of postsynaptic neurotransmitter receptor diffusion trapping Any process that modulates the frequency, rate or extent of postsynaptic neurotransmitter receptor diffusion trapping. tmpzr1t_l9r_go_relaxed.owl bc 2018-05-10T14:26:59Z biological_process owl:Class GO:0042191 biolink:NamedThing methylmercury metabolic process The chemical reactions and pathways involving methylmercury (MeHg+), a highly toxic organometal which can accumulate in tissues, particularly in fish species. tmpzr1t_l9r_go_relaxed.owl methylmercury metabolism biological_process owl:Class GO:0018941 biolink:NamedThing organomercury metabolic process The chemical reactions and pathways involving organomercury compound, any organic compound containing a mercury atom. tmpzr1t_l9r_go_relaxed.owl organomercury metabolism UM-BBD_pathwayID:ogm biological_process owl:Class GO:0043467 biolink:NamedThing regulation of generation of precursor metabolites and energy Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and the processes involved in the liberation of energy from these substances. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055105 biolink:NamedThing ubiquitin-protein transferase inhibitor activity Binds to and stops, prevents or reduces the activity of a ubiquitin-protein transferase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004857 biolink:NamedThing enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl metalloenzyme inhibitor activity This term should only be used in cases when the regulator directly interacts with the enzyme. GO:0048551 molecular_function owl:Class GO:0071066 biolink:NamedThing detection of mechanical stimulus involved in sensory perception of wind The series of events involved in the perception of wind in which a mechanical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory detection of mechanical stimulus during perception of wind|detection of wind|perception of wind, detection of mechanical stimulus|detection of mechanical stimulus involved in sensory perception of air flow|perception of wind, sensory transduction of mechanical stimulus|sensory transduction of mechanical stimulus during perception of wind|sensory transduction of wind|perception of wind, sensory detection of mechanical stimulus mah 2009-11-04T02:47:36Z biological_process owl:Class GO:2000818 biolink:NamedThing negative regulation of myoblast proliferation Any process that stops, prevents or reduces the frequency, rate or extent of myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-12T03:06:04Z biological_process owl:Class GO:0035284 biolink:NamedThing brain segmentation Division of the brain into a series of semi-repetitive parts or segments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035282 biolink:NamedThing segmentation The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Segmentation_(biology) biological_process owl:Class GO:0043856 biolink:NamedThing anti-sigma factor antagonist activity The function of binding to an anti-sigma factor and stopping, preventing or reducing the rate of its activity. tmpzr1t_l9r_go_relaxed.owl anti-anti-sigma factor activity molecular_function owl:Class GO:0002796 biolink:NamedThing positive regulation of antimicrobial peptide secretion Any process that activates or increases the frequency, rate, or extent of antimicrobial peptide secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of antimicrobial peptide secretion|up regulation of antimicrobial peptide secretion|upregulation of antimicrobial peptide secretion|activation of antimicrobial peptide secretion|stimulation of antimicrobial peptide secretion biological_process owl:Class GO:0002793 biolink:NamedThing positive regulation of peptide secretion Any process that activates or increases the frequency, rate, or extent of peptide secretion. tmpzr1t_l9r_go_relaxed.owl stimulation of peptide secretion|up regulation of peptide secretion|activation of peptide secretion|up-regulation of peptide secretion|upregulation of peptide secretion biological_process owl:Class GO:0080193 biolink:NamedThing diffuse secondary thickening Lateral growth of the older parts of a stem that occurs when the central parenchyma cells and the not yet fully differentiated fiber cells of the bundle sheaths continue to undergo cell division and expansion for a long period of time, leading to an increase in girth of the stem. tmpzr1t_l9r_go_relaxed.owl Occurs in the stems (PO:0009047) of some Arecaceae (palms). dhl 2012-12-06T15:57:50Z biological_process owl:Class GO:0046453 biolink:NamedThing dipyrrin metabolic process The chemical reactions and pathways involving dipyrrins (pyrromethanes), compounds containing two pyrrole rings linked through a methine, -CH=, group. tmpzr1t_l9r_go_relaxed.owl dipyrrin metabolism biological_process owl:Class GO:0097394 biolink:NamedThing telomeric repeat-containing RNA transcription by RNA polymerase II The synthesis of telomeric repeat-containing RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II promoter. tmpzr1t_l9r_go_relaxed.owl telomeric RNA transcription from Pol II promoter|TERRA RNA transcription from RNA pol II promoter|telomeric repeat-containing RNA transcription from RNA pol II promoter https://github.com/geneontology/go-ontology/issues/14854 pr 2012-10-23T10:09:15Z biological_process owl:Class GO:0086049 biolink:NamedThing membrane repolarization during AV node cell action potential The process in which ions are transported across a membrane such that the AV node cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl membrane repolarization involved in regulation of AV node cardiac muscle cell action potential|membrane repolarization involved in regulation of atrioventricular node cardiac muscle cell action potential dph 2011-11-16T11:43:38Z biological_process owl:Class GO:0086009 biolink:NamedThing membrane repolarization The process in which ions are transported across a membrane such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:13:18Z biological_process owl:Class GO:0045905 biolink:NamedThing positive regulation of translational termination Any process that activates or increases the frequency, rate or extent of translational termination. tmpzr1t_l9r_go_relaxed.owl upregulation of translational termination|up regulation of translational termination|up-regulation of translational termination|activation of translational termination|stimulation of translational termination biological_process owl:Class GO:0043243 biolink:NamedThing positive regulation of protein-containing complex disassembly Any process that activates or increases the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl activation of protein complex disassembly|upregulation of protein complex disassembly|stimulation of protein complex disassembly|up-regulation of protein complex disassembly|up regulation of protein complex disassembly|positive regulation of protein complex disassembly biological_process owl:Class GO:0032339 biolink:NamedThing negative regulation of inhibin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of inhibin from a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of inhibin secretion|down regulation of inhibin secretion|downregulation of inhibin secretion|down-regulation of inhibin secretion biological_process owl:Class GO:0032338 biolink:NamedThing regulation of inhibin secretion Any process that modulates the frequency, rate or extent of the regulated release of inhibin from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031546 biolink:NamedThing brain-derived neurotrophic factor receptor binding Binding to a brain-derived neurotrophic factor receptor. tmpzr1t_l9r_go_relaxed.owl BDNF receptor binding|brain-derived neurotrophic factor ligand molecular_function owl:Class GO:0005165 biolink:NamedThing neurotrophin receptor binding Binding to a neurotrophin receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin receptor ligand|neurotrophin molecular_function owl:Class GO:0001924 biolink:NamedThing regulation of B-1 B cell differentiation Any process that modulates the frequency, rate, or extent of B-1 B cell differentiation. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity. tmpzr1t_l9r_go_relaxed.owl regulation of B-1 B-lymphocyte differentiation|regulation of B-1 B-cell differentiation|regulation of B-1 B cell development|regulation of B-1 B lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045577 biolink:NamedThing regulation of B cell differentiation Any process that modulates the frequency, rate or extent of B cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte differentiation|regulation of B-cell differentiation|regulation of B lymphocyte differentiation|regulation of B cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0030757 biolink:NamedThing 3-methylquercitin 7-O-methyltransferase activity Catalysis of the reaction: 3',4',5,7-tetrahydroxy-3-methoxyflavone + S-adenosyl-L-methionine(1+) = 3',4',5-trihydroxy-3,7-dimethoxyflavone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:5,7,3',4'-tetrahydroxy-3-methoxyflavone 7-O-methyltransferase activity|flavonol 7-O-methyltransferase activity|7-OMT activity|flavonol 7-methyltransferase activity|S-adenosyl-L-methionine:3',4',5,7-tetrahydroxy-3-methoxyflavone 7-O-methyltransferase activity|3-methylquercetin 7-O-methyltransferase activity EC:2.1.1.82|KEGG_REACTION:R05323|MetaCyc:2.1.1.82-RXN|RHEA:16181 molecular_function owl:Class GO:0019567 biolink:NamedThing arabinose biosynthetic process The chemical reactions and pathways resulting in the formation of arabinose, arabino-pentose. tmpzr1t_l9r_go_relaxed.owl arabinose biosynthesis|arabinose anabolism|arabinose formation|arabinose synthesis biological_process owl:Class GO:0019322 biolink:NamedThing pentose biosynthetic process The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentose biosynthesis|pentose formation|pentose synthesis|pentose anabolism biological_process owl:Class GO:1901129 biolink:NamedThing gentamycin catabolic process The chemical reactions and pathways resulting in the breakdown of gentamycin. tmpzr1t_l9r_go_relaxed.owl gentamycin breakdown|gentamycin catabolism|gentamycin degradation yaf 2012-07-11T03:26:51Z biological_process owl:Class GO:1901128 biolink:NamedThing gentamycin metabolic process The chemical reactions and pathways involving gentamycin. tmpzr1t_l9r_go_relaxed.owl gentamycin metabolism yaf 2012-07-11T03:26:25Z biological_process owl:Class GO:1903232 biolink:NamedThing melanosome assembly The aggregation, arrangement and bonding together of a set of components to form a melanosome, a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. tmpzr1t_l9r_go_relaxed.owl melanosome formation bf 2014-07-31T10:41:38Z biological_process owl:Class GO:0048680 biolink:NamedThing positive regulation of axon regeneration Any process that activates, maintains or increases the rate of axon regeneration. tmpzr1t_l9r_go_relaxed.owl activation of axon regeneration|up regulation of axon regeneration|up-regulation of axon regeneration|upregulation of axon regeneration|stimulation of axon regeneration biological_process owl:Class GO:0071103 biolink:NamedThing DNA conformation change A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl DNA conformation modification mah 2009-11-09T11:36:34Z biological_process owl:Class GO:1902660 biolink:NamedThing negative regulation of glucose mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of glucose mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of glucose mediated signaling pathway|negative regulation of glucose mediated signalling|down-regulation of glucose mediated signalling|down-regulation of glucose mediated signaling pathway|downregulation of glucose mediated signalling|inhibition of glucose mediated signalling|down regulation of glucose mediated signalling|down regulation of glucose mediated signaling pathway|downregulation of glucose mediated signaling pathway di 2014-01-28T17:54:31Z biological_process owl:Class GO:1902659 biolink:NamedThing regulation of glucose mediated signaling pathway Any process that modulates the frequency, rate or extent of glucose mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of glucose mediated signalling di 2014-01-28T17:54:21Z biological_process owl:Class GO:0002088 biolink:NamedThing lens development in camera-type eye The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl lens development|lens development in camera-style eye biological_process owl:Class GO:0051179 biolink:NamedThing localization Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation. tmpzr1t_l9r_go_relaxed.owl single-organism localization|establishment and maintenance of substance location|establishment and maintenance of localization|establishment and maintenance of cellular component location|establishment and maintenance of position|localisation|single organism localization|establishment and maintenance of substrate location jl 2013-12-18T13:51:04Z GO:1902578 biological_process owl:Class GO:0040033 biolink:NamedThing RNA-mediated gene silencing by inhibition of translation Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein. tmpzr1t_l9r_go_relaxed.owl down regulation of mRNA translation, ncRNA-mediated|negative regulation of translation, ncRNA-mediated|inhibition of mRNA translation, ncRNA-mediated|down-regulation of mRNA translation, ncRNA-mediated|downregulation of mRNA translation, ncRNA-mediated biological_process owl:Class GO:0038195 biolink:NamedThing urokinase plasminogen activator signaling pathway A series of molecular signals initiated by the binding of urokinase plasminogen activator to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl uPA signaling pathway bf 2013-10-28T09:14:13Z biological_process owl:Class GO:0040020 biolink:NamedThing regulation of meiotic nuclear division Any process that modulates the frequency, rate or extent of meiotic nuclear division, the process in which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes. tmpzr1t_l9r_go_relaxed.owl regulation of meiosis biological_process owl:Class GO:0032865 biolink:NamedThing ERMES complex A protein complex that links the endoplasmic reticulum with mitochondria and may have a role in promoting exchange of calcium and phospholipids between the two organelles. tmpzr1t_l9r_go_relaxed.owl ER-mitochondria encounter structure|Mdm10/Mdm12/Mmm1 complex|MMM1 complex|mitochore cellular_component owl:Class GO:0140534 biolink:NamedThing endoplasmic reticulum protein-containing complex A protein complex that is part of an endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19952 pg 2020-10-28T12:14:12Z cellular_component owl:Class GO:0042881 biolink:NamedThing D-galactonate transmembrane transporter activity Enables the transfer of D-galactonate, the D-enantiomer of galactonate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042879 biolink:NamedThing aldonate transmembrane transporter activity Enables the transfer of aldonate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008851 biolink:NamedThing ethanolamine ammonia-lyase activity Catalysis of the reaction: ethanolamine = acetaldehyde + NH3. tmpzr1t_l9r_go_relaxed.owl ethanolamine deaminase activity|ethanolamine ammonia-lyase (acetaldehyde-forming) activity EC:4.3.1.7|RHEA:15313|MetaCyc:ETHAMLY-RXN molecular_function owl:Class GO:0016841 biolink:NamedThing ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. tmpzr1t_l9r_go_relaxed.owl EC:4.3.1.- molecular_function owl:Class GO:0035921 biolink:NamedThing desmosome disassembly The controlled breakdown of a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm. tmpzr1t_l9r_go_relaxed.owl desmosome dissociation bf 2011-07-05T01:33:25Z biological_process owl:Class GO:1901990 biolink:NamedThing regulation of mitotic cell cycle phase transition Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle control jl 2013-03-19T16:14:38Z biological_process owl:Class GO:0007346 biolink:NamedThing regulation of mitotic cell cycle Any process that modulates the rate or extent of progress through the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl modulation of mitotic cell cycle progression|regulation of progression through mitotic cell cycle|mitotic cell cycle modulation|mitotic cell cycle regulator|regulation of mitotic cell cycle progression|mitotic cell cycle regulation biological_process owl:Class GO:0043783 biolink:NamedThing oxidoreductase activity, acting on metal ions, flavin as acceptor Catalysis of an oxidation-reduction in which the metal ion is reduced and flavin acts as an electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, oxidizing metal ions with flavin as acceptor|oxidoreductase activity, reducing metal ions, flavin as acceptor https://github.com/geneontology/go-ontology/issues/20675|https://github.com/geneontology/go-ontology/issues/20682 EC:1.16.8.- molecular_function owl:Class GO:0016722 biolink:NamedThing oxidoreductase activity, acting on metal ions Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, oxidizing metal ions|oxidoreductase activity, reducing metal ions https://github.com/geneontology/go-ontology/issues/20675 Reactome:R-HSA-917805|EC:1.16.-.- molecular_function owl:Class GO:0030726 biolink:NamedThing male germline ring canal formation Formation of the intercellular bridges that connect the germ-line cells of a male cyst. tmpzr1t_l9r_go_relaxed.owl testicular ring canal formation|spermatocyte ring canal formation biological_process owl:Class GO:0030725 biolink:NamedThing germline ring canal formation Assembly of the cytoplasmic bridges between developing spermatogonial or oogonial cysts. tmpzr1t_l9r_go_relaxed.owl ring canal formation biological_process owl:Class GO:0009595 biolink:NamedThing detection of biotic stimulus The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of biotic stimulus GO:0009596 biological_process owl:Class GO:0009607 biolink:NamedThing response to biotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. tmpzr1t_l9r_go_relaxed.owl response to biotic stress Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0051309 biolink:NamedThing female meiosis chromosome separation The process in which paired chromosomes are physically detached from each other during female meiosis. tmpzr1t_l9r_go_relaxed.owl chromosome separation during female meiosis|female meiosis chromosome resolution biological_process owl:Class GO:0051304 biolink:NamedThing chromosome separation The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II). tmpzr1t_l9r_go_relaxed.owl chromatid release|rDNA separation GO:0034500 biological_process owl:Class GO:1902075 biolink:NamedThing cellular response to salt Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to salinity mls 2013-04-22T15:42:02Z biological_process owl:Class GO:0106083 biolink:NamedThing nuclear membrane protein complex Any protein complex that is part of the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-05T19:51:26Z cellular_component owl:Class GO:1902624 biolink:NamedThing positive regulation of neutrophil migration Any process that activates or increases the frequency, rate or extent of neutrophil migration. tmpzr1t_l9r_go_relaxed.owl activation of neutrophil migration|up-regulation of neutrophil migration|upregulation of neutrophil migration|up regulation of neutrophil migration sl 2014-01-15T18:58:58Z biological_process owl:Class GO:0004520 biolink:NamedThing endodeoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl DNA nicking activity|endonuclease G activity Reactome:R-HSA-5687464|Reactome:R-HSA-110359|Reactome:R-HSA-6782224|Reactome:R-HSA-6782204|Reactome:R-HSA-5690988|Reactome:R-HSA-5686440|Reactome:R-HSA-5686657|Reactome:R-HSA-5693584|Reactome:R-HSA-5693608|Reactome:R-HSA-9023941 molecular_function owl:Class GO:0004519 biolink:NamedThing endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-72180|Reactome:R-HSA-5358518|Reactome:R-HSA-5693533|Reactome:R-HSA-5690990|Reactome:R-HSA-5358512 molecular_function owl:Class GO:0006796 biolink:NamedThing phosphate-containing compound metabolic process The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. tmpzr1t_l9r_go_relaxed.owl phosphate metabolism|phosphate metabolic process biological_process owl:Class GO:0099628 biolink:NamedThing neurotransmitter receptor diffusion trapping The process by which diffusing neurotransmitter receptor becomes trapped in region of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098953 biolink:NamedThing receptor diffusion trapping The process by which a membrane receptor, diffusing freely within the plasma membeane, becomes trapped in some plasma membrane region. This can happen when a receptor bind, directly or indirectly, to some component of the underlying matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004099 biolink:NamedThing chitin deacetylase activity Catalysis of the reaction: chitin + H2O = chitosan + acetate. tmpzr1t_l9r_go_relaxed.owl chitin amidohydrolase activity MetaCyc:CHITIN-DEACETYLASE-RXN|RHEA:10464|EC:3.5.1.41 molecular_function owl:Class GO:0035045 biolink:NamedThing sperm plasma membrane disassembly The gradual disintegration of the sperm plasma membrane following insemination. This process is seen in Drosophila after entry of the entire sperm, surrounded by its plasma membrane, into the egg. tmpzr1t_l9r_go_relaxed.owl sperm plasma membrane catabolism|sperm plasma membrane degradation|sperm plasma membrane breakdown biological_process owl:Class GO:0002047 biolink:NamedThing phenazine biosynthetic process The chemical reactions and pathways resulting in the formation of a phenazine antibiotic, a polycyclic pyrazine with two nitrogen atoms in the ring. tmpzr1t_l9r_go_relaxed.owl acridizine biosynthetic process|azophenylene biosynthesis|acridizine biosynthesis|dibenzo-p-diazine biosynthesis|dibenzo-p-diazine biosynthetic process|dibenzopyrazine biosynthesis|dibenzopyrazine biosynthetic process|azophenylene biosynthetic process biological_process owl:Class GO:0060958 biolink:NamedThing endocardial cell development The progression of an endocardial cell over time, from its formation to the mature cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:26:59Z biological_process owl:Class GO:0055006 biolink:NamedThing cardiac cell development The process whose specific outcome is the progression of a cardiac cell over time, from its formation to the mature state. A cardiac cell is a cell that will form part of the cardiac organ of an individual. tmpzr1t_l9r_go_relaxed.owl heart cell development|cardiocyte development biological_process owl:Class GO:1905315 biolink:NamedThing cell proliferation involved in endocardial cushion morphogenesis Any cell proliferation that is involved in endocardial cushion morphogenesis. tmpzr1t_l9r_go_relaxed.owl rl 2016-07-12T13:56:36Z biological_process owl:Class GO:0061323 biolink:NamedThing cell proliferation involved in heart morphogenesis The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T09:05:26Z biological_process owl:Class GO:0021774 biolink:NamedThing retinoic acid receptor signaling pathway involved in ventral spinal cord interneuron specification The series of molecular signals initiated by binding of a ligand to a retinoic acid receptor in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in ventral spinal cord interneuron specification biological_process owl:Class GO:0097479 biolink:NamedThing synaptic vesicle localization Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle localisation|establishment and maintenance of synaptic vesicle localization|establishment and maintenance of synaptic vesicle position pr 2013-05-22T14:29:55Z biological_process owl:Class GO:0043381 biolink:NamedThing negative regulation of memory T cell differentiation Any process that stops, prevents, or reduces the rate of memory T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of memory T-lymphocyte differentiation|down regulation of memory T cell differentiation|inhibition of memory T cell differentiation|negative regulation of memory T lymphocyte differentiation|negative regulation of memory T cell development|downregulation of memory T cell differentiation|down-regulation of memory T cell differentiation|negative regulation of memory T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0072750 biolink:NamedThing cellular response to leptomycin B Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leptomycin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-10T14:07:32Z biological_process owl:Class GO:0046075 biolink:NamedThing dTTP metabolic process The chemical reactions and pathways involving dTTP, deoxyribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl dTTP metabolism biological_process owl:Class GO:0009219 biolink:NamedThing pyrimidine deoxyribonucleotide metabolic process The chemical reactions and pathways involving a pyrimidine deoxynucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleotide metabolism biological_process owl:Class GO:0032030 biolink:NamedThing myosin I light chain binding Binding to a light chain of a myosin I complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021948 biolink:NamedThing inward migration of deep nuclear neurons The directed movement of a deep nuclear neuron from the rostrodorsal region of the cerebellar plate to their final more ventral position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002629 biolink:NamedThing negative regulation of proteolysis associated with antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of proteolysis associated with antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl inhibition of proteolysis associated with antigen processing and presentation|downregulation of proteolysis associated with antigen processing and presentation|down-regulation of proteolysis associated with antigen processing and presentation|down regulation of proteolysis associated with antigen processing and presentation biological_process owl:Class GO:0002628 biolink:NamedThing regulation of proteolysis associated with antigen processing and presentation Any process that modulates the frequency, rate, or extent of proteolysis associated with antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044423 biolink:NamedThing virion component Any constituent part of a virion, a complete fully infectious extracellular virus particle. tmpzr1t_l9r_go_relaxed.owl virion|complete virus particle|virion part Wikipedia:Virus GO:0019012 cellular_component owl:Class GO:0005575 biolink:NamedThing cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). tmpzr1t_l9r_go_relaxed.owl cellular component|cell or subcellular entity|subcellular entity NIF_Subcellular:sao1337158144 Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. GO:0008372 cellular_component owl:Class GO:0051557 biolink:NamedThing leucoanthocyanidin biosynthetic process The chemical reactions and pathways resulting in the formation of leucoanthocyanidins, a class of colorless intermediates in the biosynthetic pathway of the pigmented flavonoids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009813 biolink:NamedThing flavonoid biosynthetic process The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. tmpzr1t_l9r_go_relaxed.owl flavonoid formation|flavonoid anabolism|flavonoid biosynthesis|flavonoid synthesis MetaCyc:PWY1F-FLAVSYN|Wikipedia:Flavonoid biological_process owl:Class GO:0001933 biolink:NamedThing negative regulation of protein phosphorylation Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein. tmpzr1t_l9r_go_relaxed.owl down regulation of protein amino acid phosphorylation|inhibition of protein amino acid phosphorylation|negative regulation of protein amino acid phosphorylation|downregulation of protein amino acid phosphorylation|down-regulation of protein amino acid phosphorylation biological_process owl:Class GO:0033028 biolink:NamedThing myeloid cell apoptotic process Any apoptotic process in a myeloid cell, a cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. tmpzr1t_l9r_go_relaxed.owl apoptosis of myeloid cells|myeloid cell apoptosis biological_process owl:Class GO:0030632 biolink:NamedThing D-alanine biosynthetic process The chemical reactions and pathways resulting in the formation of D-alanine, the D-enantiomer of the amino acid alanine, i.e (2R)-2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-alanine formation|D-alanine synthesis|D-alanine anabolism|D-alanine biosynthesis biological_process owl:Class GO:0046145 biolink:NamedThing D-alanine family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of D-alanine and related amino acids. tmpzr1t_l9r_go_relaxed.owl D-alanine family amino acid anabolism|D-alanine family amino acid biosynthesis|D-alanine family amino acid synthesis|D-alanine family amino acid formation biological_process owl:Class GO:0035116 biolink:NamedThing embryonic hindlimb morphogenesis The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. The hindlimbs are the posterior limbs of an animal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035137 biolink:NamedThing hindlimb morphogenesis The process in which the anatomical structures of the hindlimb are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051055 biolink:NamedThing negative regulation of lipid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. tmpzr1t_l9r_go_relaxed.owl negative regulation of lipid biosynthesis|down regulation of lipid biosynthetic process|negative regulation of lipid anabolism|negative regulation of lipid synthesis|negative regulation of lipid formation|downregulation of lipid biosynthetic process|inhibition of lipid biosynthetic process|down-regulation of lipid biosynthetic process|negative regulation of lipogenesis biological_process owl:Class GO:0009890 biolink:NamedThing negative regulation of biosynthetic process Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances. tmpzr1t_l9r_go_relaxed.owl negative regulation of formation|inhibition of biosynthetic process|downregulation of biosynthetic process|down-regulation of biosynthetic process|down regulation of biosynthetic process|negative regulation of synthesis|negative regulation of biosynthesis|negative regulation of anabolism biological_process owl:Class GO:0035133 biolink:NamedThing post-embryonic caudal fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the caudal fin are generated and organized. The caudal fin is an unpaired medial fin mounted at the caudal end of the fish and is the main fin used for propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035132 biolink:NamedThing post-embryonic medial fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the medial fin are generated and organized. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming. tmpzr1t_l9r_go_relaxed.owl post-embryonic unpaired fin morphogenesis biological_process owl:Class GO:0061269 biolink:NamedThing mesonephric glomerular mesangial cell proliferation involved in mesonephros development The multiplication or reproduction of glomerular mesangial cells in the mesonephros, resulting in the expansion of the population. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T03:20:57Z biological_process owl:Class GO:0072110 biolink:NamedThing glomerular mesangial cell proliferation The multiplication or reproduction of glomerular mesangial cells, resulting in the expansion of the population. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T10:45:47Z biological_process owl:Class GO:0061252 biolink:NamedThing mesonephric glomerular epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric glomerular epithelial cell. Mesonephric glomerular epithelial cells are specialized epithelial cells that form part of the mesonephric glomerulus; there are two types, mesonephric glomerular parietal epithelial cells and mesonephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:23:50Z biological_process owl:Class GO:0072314 biolink:NamedThing glomerular epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a glomerular epithelial cell. Glomerular epithelial cells are specialized epithelial cells that form part of the glomerulus; there are two types, glomerular parietal epithelial cells and glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T07:02:25Z biological_process owl:Class GO:0043462 biolink:NamedThing regulation of ATP-dependent activity Any process that modulates the rate of an ATP-dependent activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATPase activity|regulation of adenosinetriphosphatase activity https://github.com/geneontology/go-ontology/issues/22371 biological_process owl:Class GO:0061890 biolink:NamedThing positive regulation of astrocyte activation Any process that increases the frequency, rate or extent of astrocyte activation. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-01T22:31:50Z biological_process owl:Class GO:0048711 biolink:NamedThing positive regulation of astrocyte differentiation Any process that activates or increases the frequency, rate or extent of astrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of astrocyte differentiation|stimulation of astrocyte differentiation|upregulation of astrocyte differentiation|up regulation of astrocyte differentiation|activation of astrocyte differentiation biological_process owl:Class GO:1900303 biolink:NamedThing regulation of laminaritriose transport Any process that modulates the frequency, rate or extent of laminaritriose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:57:49Z biological_process owl:Class GO:0001198 biolink:NamedThing negative regulation of mating-type specific transcription from RNA polymerase II promoter Any mating-type specific process that stops, prevents or reduces the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl down-regulation of RNA polymerase II transcription, mating-type specific|down regulation of RNA polymerase II transcription, mating-type specific|downregulation of RNA polymerase II transcription, mating-type specific|inhibition of RNA polymerase II transcription, mating-type specific krc 2011-11-23T09:36:06Z biological_process owl:Class GO:0001196 biolink:NamedThing regulation of mating-type specific transcription from RNA polymerase II promoter Any mating-type specific process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl krc 2011-11-23T09:25:32Z biological_process owl:Class GO:2000656 biolink:NamedThing regulation of apolipoprotein binding Any process that modulates the frequency, rate or extent of apolipoprotein binding. tmpzr1t_l9r_go_relaxed.owl vk 2011-05-02T05:33:41Z biological_process owl:Class GO:0046317 biolink:NamedThing regulation of glucosylceramide biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide. tmpzr1t_l9r_go_relaxed.owl regulation of glucosylceramide formation|regulation of glucosylceramide synthesis|regulation of glucosylceramide anabolism|regulation of glucosylceramide biosynthesis biological_process owl:Class GO:0008700 biolink:NamedThing 4-hydroxy-2-oxoglutarate aldolase activity Catalysis of the reaction: 4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate. tmpzr1t_l9r_go_relaxed.owl hydroxyketoglutarate aldolase activity|2-keto-4-hydroxybutyrate aldolase activity|4-hydroxy-2-ketoglutarate aldolase activity|DL-4-hydroxy-2-ketoglutarate aldolase activity|4-hydroxy-2-oxoglutarate glyoxylate-lyase activity|2-oxo-4-hydroxyglutaric aldolase activity|2-keto-4-hydroxyglutaric aldolase activity|KHG-aldolase activity|4-hydroxy-2-ketoglutaric aldolase activity|4-hydroxy-2-oxoglutarate glyoxylate-lyase (pyruvate-forming)|2-oxo-4-hydroxyglutarate aldolase activity|hydroxyketoglutaric aldolase activity|2-keto-4-hydroxyglutarate aldolase activity EC:4.1.3.16|MetaCyc:4OH2OXOGLUTARALDOL-RXN|RHEA:18169|Reactome:R-HSA-6784423 molecular_function owl:Class GO:0033756 biolink:NamedThing Oplophorus-luciferin 2-monooxygenase activity Catalysis of the reaction: Oplophorus luciferin + O2 = oxidized Oplophorus luciferin + CO2 + hnu. tmpzr1t_l9r_go_relaxed.owl Oplophorus-luciferin:oxygen 2-oxidoreductase (decarboxylating) activity|Oplophorus luciferase activity MetaCyc:RXN-3361|EC:1.13.12.13|RHEA:20417 molecular_function owl:Class GO:0098903 biolink:NamedThing regulation of membrane repolarization during action potential Any process that modulates the rate, frequency or extent of membrane repolarization during an action potential. Membrane repolarization is the process in which membrane potential changes in the repolarizing direction, towards the resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098900 biolink:NamedThing regulation of action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl The ion channels through which current flows during an action potential should be annotated to the process 'action potential'. Gene products involved in modulating the characteristics of an action potential via changing the expression levels or the activity of these channels (e.g. modulating their kinetics or voltage sensitivity) should be annotated to this regulation term. biological_process owl:Class GO:1904171 biolink:NamedThing negative regulation of bleb assembly Any process that stops, prevents or reduces the frequency, rate or extent of bleb assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of bleb assembly|down-regulation of bleb assembly|negative regulation of cell blebbing|inhibition of cell blebbing|down regulation of cell blebbing|downregulation of bleb assembly|down-regulation of cell blebbing|down regulation of bleb assembly|downregulation of cell blebbing als 2015-04-23T09:32:25Z biological_process owl:Class GO:0071175 biolink:NamedThing MAML2-RBP-Jkappa-ICN1 complex A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML2-RBP-Jkappa-Notch1 complex mah 2009-11-23T02:36:28Z cellular_component owl:Class GO:0002925 biolink:NamedThing positive regulation of humoral immune response mediated by circulating immunoglobulin Any process that activates or increases the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin. tmpzr1t_l9r_go_relaxed.owl up-regulation of humoral immune response mediated by circulating immunoglobulin|activation of humoral immune response mediated by circulating immunoglobulin|stimulation of humoral immune response mediated by circulating immunoglobulin|upregulation of humoral immune response mediated by circulating immunoglobulin|up regulation of humoral immune response mediated by circulating immunoglobulin biological_process owl:Class GO:0002922 biolink:NamedThing positive regulation of humoral immune response Any process that activates or increases the frequency, rate, or extent of a humoral immune response. tmpzr1t_l9r_go_relaxed.owl stimulation of humoral immune response|up-regulation of humoral immune response|activation of humoral immune response|up regulation of humoral immune response|upregulation of humoral immune response biological_process owl:Class GO:0070382 biolink:NamedThing exocytic vesicle A transport vesicle that mediates transport from an intracellular compartment to the plasma membrane, and fuses with the plasma membrane to release various cargo molecules, such as proteins or hormones, by exocytosis. tmpzr1t_l9r_go_relaxed.owl exocytic constitutive secretory pathway transport vesicle|exocytotic vesicle cellular_component owl:Class GO:0099503 biolink:NamedThing secretory vesicle A cytoplasmic, membrane bound vesicle that is capable of fusing to the plasma membrane to release its contents into the extracellular space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042848 biolink:NamedThing sorbose catabolic process The chemical reactions and pathways resulting in the breakdown of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid. tmpzr1t_l9r_go_relaxed.owl sorbose degradation|sorbose catabolism|sorbose breakdown biological_process owl:Class GO:0019320 biolink:NamedThing hexose catabolic process The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexose degradation|hexose catabolism|hexose breakdown biological_process owl:Class GO:0106259 biolink:NamedThing cell-to-cell migration in host The directional movement of a symbiont from one host cell to another. tmpzr1t_l9r_go_relaxed.owl hjd 2020-05-01T14:09:35Z biological_process owl:Class GO:0044001 biolink:NamedThing migration in host The directional movement of an organism from one place to another within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl migration within host biological_process owl:Class GO:0030307 biolink:NamedThing positive regulation of cell growth Any process that activates or increases the frequency, rate, extent or direction of cell growth. tmpzr1t_l9r_go_relaxed.owl stimulation of cell growth|up regulation of cell growth|upregulation of cell growth|activation of cell growth|up-regulation of cell growth biological_process owl:Class GO:0048522 biolink:NamedThing positive regulation of cellular process Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular physiological process|upregulation of cellular process|activation of cellular process|up-regulation of cellular process|stimulation of cellular process|up regulation of cellular process GO:0051242 biological_process owl:Class GO:1904328 biolink:NamedThing regulation of myofibroblast contraction Any process that modulates the frequency, rate or extent of myofibroblast contraction. tmpzr1t_l9r_go_relaxed.owl regulation of MF contraction|regulation of MFB contraction sl 2015-06-11T15:30:29Z biological_process owl:Class GO:1902960 biolink:NamedThing negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of aspartic protease activity involved in amyloid precursor protein catabolism|negative regulation of aspartate protease activity involved in APP catabolism|downregulation of aspartyl protease activity involved in amyloid precursor protein catabolism|inhibition of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|down regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|down-regulation of aspartyl protease activity involved in amyloid precursor protein degradation|down regulation of carboxyl protease activity involved in amyloid precursor protein degradation|downregulation of aspartic endopeptidase activity involved in APP catabolic process|down regulation of aspartic protease activity involved in amyloid precursor protein degradation|down regulation of aspartyl protease activity involved in amyloid precursor protein degradation|down regulation of aspartic protease activity involved in APP catabolic process|downregulation of aspartate protease activity involved in amyloid precursor protein catabolism|downregulation of aspartic protease activity involved in amyloid precursor protein breakdown|downregulation of carboxyl protease activity involved in amyloid precursor protein catabolism|down-regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|down regulation of aspartate protease activity involved in APP catabolic process|down-regulation of aspartate protease activity involved in amyloid precursor protein catabolism|downregulation of aspartyl protease activity involved in amyloid precursor protein degradation|downregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|down-regulation of aspartate protease activity involved in amyloid precursor protein degradation|down regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|inhibition of carboxyl protease activity involved in amyloid precursor protein breakdown|downregulation of aspartic protease activity involved in APP catabolism|downregulation of aspartic-type endopeptidase activity involved in APP catabolism|downregulation of aspartate protease activity involved in amyloid precursor protein breakdown|inhibition of aspartic endopeptidase activity involved in APP catabolic process|down regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|downregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|inhibition of aspartate protease activity involved in amyloid precursor protein catabolic process|down regulation of aspartate protease activity involved in amyloid precursor protein degradation|negative regulation of aspartic protease activity involved in amyloid precursor protein breakdown|down regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|inhibition of aspartate protease activity involved in amyloid precursor protein catabolism|inhibition of aspartic protease activity involved in amyloid precursor protein catabolic process|down regulation of aspartate protease activity involved in amyloid precursor protein catabolism|negative regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|down-regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|downregulation of aspartate protease activity involved in amyloid precursor protein degradation|inhibition of aspartic endopeptidase activity involved in APP catabolism|down-regulation of aspartic protease activity involved in APP catabolic process|negative regulation of aspartic endopeptidase activity involved in APP catabolism|down-regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|down-regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|downregulation of carboxyl protease activity involved in amyloid precursor protein degradation|downregulation of aspartic protease activity involved in APP catabolic process|down-regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|downregulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|inhibition of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|down-regulation of carboxyl protease activity involved in APP catabolism|inhibition of carboxyl protease activity involved in APP catabolism|down regulation of carboxyl protease activity involved in APP catabolic process|inhibition of aspartyl protease activity involved in amyloid precursor protein catabolism|down regulation of aspartic protease activity involved in APP catabolism|down-regulation of aspartate protease activity involved in amyloid precursor protein breakdown|downregulation of aspartic protease activity involved in amyloid precursor protein degradation|inhibition of aspartic protease activity involved in APP catabolism|inhibition of aspartic endopeptidase activity involved in amyloid precursor protein degradation|negative regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|downregulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|inhibition of aspartyl protease activity involved in amyloid precursor protein degradation|down regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|down regulation of aspartic endopeptidase activity involved in APP catabolic process|inhibition of aspartic protease activity involved in APP catabolic process|downregulation of aspartate protease activity involved in APP catabolic process|down-regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|down regulation of aspartic protease activity involved in amyloid precursor protein catabolism|down regulation of aspartic endopeptidase activity involved in APP catabolism|downregulation of aspartyl protease activity involved in APP catabolism|inhibition of aspartate protease activity involved in amyloid precursor protein degradation|downregulation of aspartyl protease activity involved in amyloid precursor protein breakdown|down-regulation of aspartic-type endopeptidase activity involved in APP catabolism|down regulation of aspartic-type endopeptidase activity involved in APP catabolism|negative regulation of aspartyl protease activity involved in APP catabolism|down regulation of carboxyl protease activity involved in APP catabolism|downregulation of aspartyl protease activity involved in APP catabolic process|down regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|negative regulation of carboxyl protease activity involved in APP catabolic process|down-regulation of aspartic protease activity involved in amyloid precursor protein degradation|negative regulation of aspartate protease activity involved in APP catabolic process|inhibition of aspartic protease activity involved in amyloid precursor protein breakdown|down regulation of aspartyl protease activity involved in APP catabolic process|inhibition of carboxyl protease activity involved in amyloid precursor protein degradation|negative regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|negative regulation of aspartyl protease activity involved in amyloid precursor protein degradation|negative regulation of aspartate protease activity involved in amyloid precursor protein catabolism|negative regulation of aspartate protease activity involved in amyloid precursor protein breakdown|downregulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartyl protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartic protease activity involved in amyloid precursor protein catabolism|down regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|down regulation of aspartate protease activity involved in amyloid precursor protein breakdown|down-regulation of aspartate protease activity involved in APP catabolism|down-regulation of carboxyl protease activity involved in APP catabolic process|inhibition of aspartyl protease activity involved in APP catabolic process|down regulation of aspartic protease activity involved in amyloid precursor protein breakdown|down regulation of aspartate protease activity involved in APP catabolism|inhibition of aspartyl protease activity involved in amyloid precursor protein breakdown|negative regulation of aspartic endopeptidase activity involved in APP catabolic process|negative regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|downregulation of aspartic endopeptidase activity involved in APP catabolism|inhibition of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|downregulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|down regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|negative regulation of aspartic protease activity involved in APP catabolic process|inhibition of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|inhibition of carboxyl protease activity involved in amyloid precursor protein catabolism|down-regulation of aspartic protease activity involved in amyloid precursor protein breakdown|downregulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|negative regulation of aspartic-type endopeptidase activity involved in APP catabolism|down-regulation of aspartyl protease activity involved in APP catabolic process|down-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|negative regulation of aspartic protease activity involved in amyloid precursor protein degradation|downregulation of carboxyl protease activity involved in amyloid precursor protein breakdown|down regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|negative regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|down-regulation of aspartic endopeptidase activity involved in APP catabolism|negative regulation of carboxyl protease activity involved in amyloid precursor protein degradation|negative regulation of aspartic-type endopeptidase activity involved in APP catabolic process|inhibition of aspartate protease activity involved in amyloid precursor protein breakdown|down-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|inhibition of aspartate protease activity involved in APP catabolism|downregulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|down regulation of aspartyl protease activity involved in APP catabolism|downregulation of carboxyl protease activity involved in APP catabolism|negative regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|negative regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|down-regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|negative regulation of aspartic protease activity involved in APP catabolism|down-regulation of aspartic-type endopeptidase activity involved in APP catabolic process|negative regulation of aspartic protease activity involved in amyloid precursor protein catabolism|down-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|down-regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|down-regulation of aspartic protease activity involved in APP catabolism|down-regulation of aspartic endopeptidase activity involved in APP catabolic process|down regulation of aspartic-type endopeptidase activity involved in APP catabolic process|down regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|inhibition of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|down-regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|down regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|negative regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|down-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|negative regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|down regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartate protease activity involved in APP catabolic process|inhibition of carboxyl protease activity involved in amyloid precursor protein catabolic process|downregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|down regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|down-regulation of aspartyl protease activity involved in APP catabolism|downregulation of aspartate protease activity involved in APP catabolism|negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|downregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|down-regulation of carboxyl protease activity involved in amyloid precursor protein degradation|negative regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|downregulation of carboxyl protease activity involved in APP catabolic process|inhibition of aspartic-type endopeptidase activity involved in APP catabolic process|negative regulation of aspartyl protease activity involved in APP catabolic process|downregulation of aspartic protease activity involved in amyloid precursor protein catabolism|down-regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|downregulation of aspartic protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartic protease activity involved in amyloid precursor protein degradation|negative regulation of aspartate protease activity involved in amyloid precursor protein degradation|down regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|negative regulation of carboxyl protease activity involved in APP catabolism|downregulation of aspartate protease activity involved in amyloid precursor protein catabolic process|negative regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|down-regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|down-regulation of aspartate protease activity involved in APP catabolic process|downregulation of aspartic-type endopeptidase activity involved in APP catabolic process|inhibition of aspartyl protease activity involved in APP catabolism|inhibition of aspartic-type endopeptidase activity involved in APP catabolism|down regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|inhibition of carboxyl protease activity involved in APP catabolic process|down regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|negative regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|down-regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|inhibition of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown sjp 2014-05-06T09:07:11Z biological_process owl:Class GO:0060815 biolink:NamedThing regulation of translation involved in anterior/posterior axis specification Any process that modulates the frequency, rate or extent of translation of mRNAs that contribute to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-07T10:02:31Z biological_process owl:Class GO:0051920 biolink:NamedThing peroxiredoxin activity Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH. tmpzr1t_l9r_go_relaxed.owl Prx activity|alkyl hydroperoxide reductase C22 activity|PRDX activity|thiol-containing-reductant:hydroperoxide oxidoreductase activity|AhpC activity EC:1.11.1.24|RHEA:10008|Reactome:R-HSA-1222431|MetaCyc:1.11.1.15-RXN|Reactome:R-HSA-1500804|Reactome:R-HSA-1222755 Includes redox chemistry as part of the catalytic reaction (2 R'-SH = R'-S-S-R'), where R' refers to peroxiredoxin itself). Not to be confused with GO:0004601 (peroxidase activity, EC:1.11.1.7), which has a different reaction mechanism. molecular_function owl:Class GO:0021862 biolink:NamedThing early neuron differentiation in forebrain The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of neurons. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021879 biolink:NamedThing forebrain neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron that will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009056 biolink:NamedThing catabolic process The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. tmpzr1t_l9r_go_relaxed.owl catabolism|breakdown|single-organism catabolic process|degradation|multicellular organismal catabolic process Wikipedia:Catabolism jl 2012-10-17T15:52:35Z GO:0044712|GO:0044243 biological_process owl:Class GO:0007591 biolink:NamedThing molting cycle, chitin-based cuticle The periodic shedding of part or all of a chitin-based cuticle, which is then replaced by a new cuticle. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl chitin-based cuticle molting cycle biological_process owl:Class GO:0042303 biolink:NamedThing molting cycle The periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin, etc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033273 biolink:NamedThing response to vitamin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035332 biolink:NamedThing positive regulation of hippo signaling Any process that activates or increases the frequency, rate or extent of hippo signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of hippo signalling cascade|positive regulation of hippo signaling cascade|positive regulation of hippo signaling pathway bf 2010-02-26T10:54:59Z biological_process owl:Class GO:1902533 biolink:NamedThing positive regulation of intracellular signal transduction Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. tmpzr1t_l9r_go_relaxed.owl up regulation of signal transmission via intracellular cascade|positive regulation of signal transduction via intracellular signaling cascade|up regulation of intracellular signaling pathway|activation of intracellular signal transduction pathway|upregulation of intracellular signal transduction pathway|up-regulation of intracellular signaling pathway|positive regulation of intracellular protein kinase cascade|upregulation of intracellular signaling cascade|up-regulation of signal transmission via intracellular cascade|up regulation of signal transduction via intracellular signaling cascade|up regulation of intracellular signaling cascade|positive regulation of signal transmission via intracellular cascade|upregulation of signal transduction via intracellular signaling cascade|up-regulation of signal transduction via intracellular signaling cascade|activation of signal transduction via intracellular signaling cascade|upregulation of signal transmission via intracellular cascade|up-regulation of intracellular signal transduction pathway|up regulation of intracellular signal transduction pathway|positive regulation of intracellular signaling pathway|positive regulation of intracellular signaling chain|activation of signal transmission via intracellular cascade|positive regulation of intracellular signaling cascade|upregulation of intracellular signaling pathway|up-regulation of intracellular signal transduction|up-regulation of intracellular signaling chain|upregulation of intracellular signal transduction|upregulation of intracellular signaling chain|up regulation of intracellular signal transduction|activation of intracellular signaling chain|activation of intracellular signaling pathway|activation of intracellular signaling cascade|up regulation of intracellular signaling chain|up-regulation of intracellular signaling cascade|positive regulation of intracellular signal transduction pathway|activation of intracellular signal transduction bf 2013-12-02T11:33:10Z GO:0010740 biological_process owl:Class GO:0090364 biolink:NamedThing regulation of proteasome assembly Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active proteasome complex. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T10:55:21Z biological_process owl:Class GO:1905683 biolink:NamedThing peroxisome disassembly The disaggregation of a peroxisome into its constituent components. tmpzr1t_l9r_go_relaxed.owl peroxisomal disassembly pr 2016-11-14T10:09:15Z biological_process owl:Class GO:1903008 biolink:NamedThing organelle disassembly The disaggregation of an organelle into its constituent components. tmpzr1t_l9r_go_relaxed.owl organelle degradation jl 2014-05-13T12:36:03Z biological_process owl:Class GO:0045312 biolink:NamedThing nor-spermidine biosynthetic process The chemical reactions and pathways resulting in the formation of nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl nor-spermidine anabolism|nor-spermidine formation|nor-spermidine biosynthesis|nor-spermidine synthesis biological_process owl:Class GO:0046204 biolink:NamedThing nor-spermidine metabolic process The chemical reactions and pathways involving nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl nor-spermidine metabolism biological_process owl:Class GO:1900185 biolink:NamedThing positive regulation of xanthone-containing compound biosynthetic process Any process that activates or increases the frequency, rate or extent of xanthone-containing compound biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of xanthone-containing compound synthesis|activation of xanthone-containing compound biosynthetic process|upregulation of xanthone-containing compound formation|activation of xanthone-containing compound formation|upregulation of xanthone-containing compound synthesis|activation of xanthone biosynthetic process|up-regulation of xanthone-containing compound synthesis|up regulation of xanthone-containing compound biosynthesis|positive regulation of xanthone biosynthetic process|activation of xanthone-containing compound synthesis|positive regulation of xanthone-containing compound synthesis|up-regulation of xanthone-containing compound biosynthetic process|upregulation of xanthone-containing compound biosynthesis|up-regulation of xanthone-containing compound biosynthesis|upregulation of xanthone biosynthesis|up regulation of xanthone-containing compound anabolism|up regulation of xanthone-containing compound biosynthetic process|up regulation of xanthone-containing compound formation|up-regulation of xanthone-containing compound formation|positive regulation of xanthone-containing compound biosynthesis|upregulation of xanthone biosynthetic process|positive regulation of xanthone-containing compound formation|positive regulation of xanthone-containing compound anabolism|up-regulation of xanthone biosynthesis|up-regulation of xanthone-containing compound anabolism|positive regulation of xanthone biosynthesis|up-regulation of xanthone biosynthetic process|upregulation of xanthone-containing compound anabolism|upregulation of xanthone-containing compound biosynthetic process|activation of xanthone biosynthesis|up regulation of xanthone biosynthesis|activation of xanthone-containing compound biosynthesis|activation of xanthone-containing compound anabolism|up regulation of xanthone biosynthetic process di 2012-03-16T03:30:32Z biological_process owl:Class GO:1900183 biolink:NamedThing regulation of xanthone-containing compound biosynthetic process Any process that modulates the frequency, rate or extent of xanthone-containing compound biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of xanthone-containing compound anabolism|regulation of xanthone-containing compound biosynthesis|regulation of xanthone-containing compound synthesis|regulation of xanthone biosynthesis|regulation of xanthone biosynthetic process|regulation of xanthone-containing compound formation di 2012-03-16T03:30:14Z biological_process owl:Class GO:0019607 biolink:NamedThing phenylethylamine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds. tmpzr1t_l9r_go_relaxed.owl phenylethylamine catabolism|phenylethylamine breakdown|phenylethylamine degradation MetaCyc:2PHENDEG-PWY biological_process owl:Class GO:0042402 biolink:NamedThing cellular biogenic amine catabolic process The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. tmpzr1t_l9r_go_relaxed.owl biogenic amine breakdown|biogenic amine degradation|biogenic amine catabolism biological_process owl:Class GO:1903206 biolink:NamedThing negative regulation of hydrogen peroxide-induced cell death Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-induced cell death. tmpzr1t_l9r_go_relaxed.owl down regulation of cell death in response to H2O2|protection against hydrogen peroxide-induced cell death|down-regulation of cell death in response to H2O2|downregulation of cell death in response to hydrogen peroxide|protection against H2O2-induced cell death|downregulation of cell death in response to H2O2|inhibition of cell death in response to hydrogen peroxide|negative regulation of cell death in response to hydrogen peroxide|downregulation of hydrogen peroxide-mediated cell death|down-regulation of cell death in response to hydrogen peroxide|inhibition of hydrogen peroxide-mediated cell death|negative regulation of hydrogen peroxide-mediated cell death|inhibition of cell death in response to H2O2|down-regulation of hydrogen peroxide-mediated cell death|down regulation of hydrogen peroxide-mediated cell death|negative regulation of cell death in response to H2O2|down regulation of cell death in response to hydrogen peroxide bf 2014-07-21T16:21:53Z biological_process owl:Class GO:1901032 biolink:NamedThing negative regulation of response to reactive oxygen species Any process that stops, prevents or reduces the frequency, rate or extent of response to reactive oxygen species. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to reactive oxygen intermediate|down-regulation of response to ROI|down regulation of response to AOS|down-regulation of response to reactive oxygen species|inhibition of response to ROI|negative regulation of response to AOS|down regulation of response to active oxygen species|inhibition of response to reactive oxygen species|down-regulation of response to active oxygen species|downregulation of response to AOS|inhibition of response to reactive oxidative species|negative regulation of response to ROI|down regulation of response to reactive oxygen intermediate|down regulation of response to reactive oxidative species|down regulation of response to reactive oxygen species|down-regulation of response to reactive oxidative species|down-regulation of response to AOS|negative regulation of response to reactive oxygen intermediate|negative regulation of response to ROS|inhibition of response to AOS|downregulation of response to ROI|negative regulation of response to reactive oxidative species|down regulation of response to ROS|inhibition of response to active oxygen species|down-regulation of response to ROS|inhibition of response to ROS|inhibition of response to reactive oxygen intermediate|downregulation of response to reactive oxidative species|downregulation of response to reactive oxygen intermediate|down regulation of response to ROI|downregulation of response to active oxygen species|downregulation of response to reactive oxygen species|negative regulation of response to active oxygen species|downregulation of response to ROS kmv 2012-06-20T07:47:28Z biological_process owl:Class GO:0103033 biolink:NamedThing beta-galactosidase activity (lactose isomerization) Catalysis of the reaction: alpha-lactose = beta-(1->6)-galactobiose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5363 molecular_function owl:Class GO:0016867 biolink:NamedThing intramolecular transferase activity, transferring acyl groups Catalysis of the transfer of an acyl group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl EC:5.4.1.- molecular_function owl:Class GO:0035819 biolink:NamedThing positive regulation of renal sodium excretion by pressure natriuresis An increase in the amount of sodium excreted in urine over a unit of time, as a result of pressure natriuresis. tmpzr1t_l9r_go_relaxed.owl natriuresis resulting from pressure natriuresis bf 2011-04-20T01:57:20Z biological_process owl:Class GO:0035815 biolink:NamedThing positive regulation of renal sodium excretion Any process that increases the amount of sodium excreted in urine over a unit of time. tmpzr1t_l9r_go_relaxed.owl natriuresis The amount of sodium excreted in urine over a unit of time can be increased by increasing the volume of urine produced (diuresis) and/or by increasing the concentration of sodium in the urine. bf 2011-04-20T01:29:26Z biological_process owl:Class GO:0017064 biolink:NamedThing fatty acid amide hydrolase activity Catalysis of the hydrolysis of a fatty acid amide to yield a fatty acid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5693742|Reactome:R-HSA-5693751 GO:0017073 molecular_function owl:Class GO:0090510 biolink:NamedThing anticlinal cell division A cell division process where the division plane is perpendicular to the surface of the organ. It adds cells to the existing cell layer or cell file. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-21T11:52:40Z biological_process owl:Class GO:0051301 biolink:NamedThing cell division The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_division Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division. biological_process owl:Class GO:0060674 biolink:NamedThing placenta blood vessel development The process whose specific outcome is the progression of a blood vessel of the placenta over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T01:09:43Z biological_process owl:Class GO:0051933 biolink:NamedThing amino acid neurotransmitter reuptake The uptake of amino acid neurotransmitters by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl amino acid neurotransmitter recycling|amino acid uptake during transmission of nerve impulse|amino acid neurotransmitter import into glial cell|amino acid neurotransmitter import into neuron biological_process owl:Class GO:0043090 biolink:NamedThing amino acid import The directed movement of amino acids into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl amino acid uptake biological_process owl:Class GO:1904942 biolink:NamedThing regulation of cardiac ventricle formation Any process that modulates the frequency, rate or extent of cardiac ventricle formation. tmpzr1t_l9r_go_relaxed.owl bc 2016-02-02T16:37:16Z biological_process owl:Class GO:2000623 biolink:NamedThing negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Any process that stops, prevents or reduces the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. tmpzr1t_l9r_go_relaxed.owl negative regulation of nuclear mRNA catabolic process, nonsense-mediated decay|negative regulation of mRNA catabolism, nonsense-mediated|negative regulation of mRNA breakdown, nonsense-mediated decay|negative regulation of nonsense-mediated mRNA decay|negative regulation of mRNA degradation, nonsense-mediated decay|negative regulation of mRNA catabolic process, nonsense-mediated pr 2011-04-18T03:32:46Z biological_process owl:Class GO:2000622 biolink:NamedThing regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Any process that modulates the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. tmpzr1t_l9r_go_relaxed.owl regulation of nonsense-mediated mRNA decay|regulation of mRNA breakdown, nonsense-mediated decay|regulation of nuclear mRNA catabolic process, nonsense-mediated decay|regulation of mRNA catabolism, nonsense-mediated|regulation of mRNA catabolic process, nonsense-mediated|regulation of mRNA degradation, nonsense-mediated decay pr 2011-04-18T03:32:42Z biological_process owl:Class GO:0046576 biolink:NamedThing rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity Catalysis of the cleavage of rhamnogalacturonan, generating oligosaccharides of the form alpha-D-us-galacturonic acid-(1,2)-alpha-L-rhamnose-(1,4)-alpha-D-galacturonate-(1,2)-L-rhamnose-(1,2)-alpha-L-rhamnose-p-(1,4)-alpha-D-galacturonic acid, terminating at the non-reducing end with a hex-4-enopyranosyluronic acid residue. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonase B activity molecular_function owl:Class GO:0060283 biolink:NamedThing negative regulation of oocyte development Any process that decreases the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060281 biolink:NamedThing regulation of oocyte development Any process that modulates the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904814 biolink:NamedThing regulation of protein localization to chromosome, telomeric region Any process that modulates the frequency, rate or extent of protein localization to chromosome, telomeric region. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization to telomere|regulation of protein localisation to chromosome, telomeric region nc 2015-11-16T12:18:43Z biological_process owl:Class GO:0052086 biolink:NamedThing suppression by symbiont of host B-cell mediated immune response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the B-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down-regulation by symbiont of host B-cell mediated immune response|negative regulation by organism of B-cell mediated immune response of other organism involved in symbiotic interaction|downregulation by symbiont of host B-cell mediated immune response|inhibition by symbiont of host B-cell mediated immune response|down regulation by symbiont of host B-cell mediated immune response GO:0052281 biological_process owl:Class GO:0052154 biolink:NamedThing modulation by symbiont of host B-cell mediated immune response Any process in which a symbiont modulates the frequency, rate or extent of the B-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation by organism of host B-cell mediated immune response|modulation by organism of B-cell mediated immune response of other organism involved in symbiotic interaction GO:0052293 biological_process owl:Class GO:1902083 biolink:NamedThing negative regulation of peptidyl-cysteine S-nitrosylation Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-cysteine S-nitrosylation. tmpzr1t_l9r_go_relaxed.owl down regulation of protein S-nitrosylation|negative regulation of S-nitrosylation|downregulation of peptidyl-cysteine S-nitrosylation|down-regulation of S-nitrosylation|down-regulation of peptidyl-cysteine S-nitrosylation|inhibition of S-nitrosylation|down regulation of peptidyl-cysteine S-nitrosylation|down-regulation of protein S-nitrosylation|inhibition of peptidyl-cysteine S-nitrosylation|downregulation of S-nitrosylation|downregulation of protein S-nitrosylation|inhibition of protein S-nitrosylation|negative regulation of protein S-nitrosylation|down regulation of S-nitrosylation rl 2013-04-24T16:49:34Z biological_process owl:Class GO:2000169 biolink:NamedThing regulation of peptidyl-cysteine S-nitrosylation Any process that modulates the frequency, rate or extent of peptidyl-cysteine S-nitrosylation. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-07T10:49:32Z biological_process owl:Class GO:0009080 biolink:NamedThing pyruvate family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of any amino acid that requires pyruvate for its synthesis, e.g. alanine. tmpzr1t_l9r_go_relaxed.owl pyruvate family amino acid catabolism|pyruvate family amino acid breakdown|pyruvate family amino acid degradation biological_process owl:Class GO:0010238 biolink:NamedThing response to proline Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a proline stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015910 biolink:NamedThing long-chain fatty acid import into peroxisome The directed movement of long-chain fatty acids into a peroxisome. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl peroxisomal long-chain fatty acid import|peroxisomal long-chain fatty acid uptake biological_process owl:Class GO:0015909 biolink:NamedThing long-chain fatty acid transport The directed movement of long-chain fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010020 biolink:NamedThing chloroplast fission The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis. tmpzr1t_l9r_go_relaxed.owl chloroplast division biological_process owl:Class GO:0043572 biolink:NamedThing plastid fission The creation of two or more plastids by division of one plastid. A plastid is any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033268 biolink:NamedThing node of Ranvier An axon part that is a gap in the myelin where voltage-gated sodium channels cluster and saltatory conduction is executed. tmpzr1t_l9r_go_relaxed.owl node of Ranvier axon Wikipedia:Nodes_of_Ranvier|NIF_Subcellular:birnlex_1152_2 cellular_component owl:Class GO:0070508 biolink:NamedThing cholesterol import The directed movement of cholesterol into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl cholesterol uptake biological_process owl:Class GO:0035376 biolink:NamedThing sterol import The directed movement of a sterol into a cell or organelle. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol uptake|sterol influx bf 2010-03-18T10:53:01Z biological_process owl:Class GO:0014067 biolink:NamedThing negative regulation of phosphatidylinositol 3-kinase signaling Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade. tmpzr1t_l9r_go_relaxed.owl down regulation of phosphatidylinositol 3-kinase cascade|negative regulation of PI3K cascade|inhibition of phosphatidylinositol 3-kinase cascade|negative regulation of PI 3-kinase cascade|negative regulation of phosphoinositide 3-kinase cascade|downregulation of phosphatidylinositol 3-kinase cascade|down-regulation of phosphatidylinositol 3-kinase cascade|negative regulation of phosphatidylinositol 3-kinase cascade biological_process owl:Class GO:1900982 biolink:NamedThing positive regulation of phenazine biosynthetic process Any process that activates or increases the frequency, rate or extent of phenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of azophenylene biosynthesis|up-regulation of acridizine biosynthetic process|up-regulation of azophenylene biosynthesis|up regulation of azophenylene biosynthesis|up regulation of dibenzopyrazine biosynthesis|activation of dibenzopyrazine biosynthesis|upregulation of dibenzo-p-diazine biosynthetic process|upregulation of acridizine biosynthetic process|activation of phenazine biosynthetic process|up-regulation of dibenzopyrazine biosynthetic process|activation of acridizine biosynthesis|up regulation of acridizine biosynthesis|activation of dibenzo-p-diazine biosynthetic process|up-regulation of phenazine biosynthetic process|up-regulation of dibenzo-p-diazine biosynthesis|up regulation of acridizine biosynthetic process|upregulation of azophenylene biosynthetic process|up-regulation of azophenylene biosynthetic process|positive regulation of dibenzo-p-diazine biosynthetic process|positive regulation of dibenzo-p-diazine biosynthesis|upregulation of phenazine biosynthetic process|upregulation of azophenylene biosynthesis|positive regulation of acridizine biosynthesis|up-regulation of acridizine biosynthesis|positive regulation of azophenylene biosynthetic process|positive regulation of acridizine biosynthetic process|upregulation of acridizine biosynthesis|up-regulation of dibenzo-p-diazine biosynthetic process|up regulation of dibenzo-p-diazine biosynthetic process|activation of azophenylene biosynthesis|up-regulation of dibenzopyrazine biosynthesis|upregulation of dibenzopyrazine biosynthetic process|activation of dibenzo-p-diazine biosynthesis|activation of azophenylene biosynthetic process|upregulation of dibenzo-p-diazine biosynthesis|activation of dibenzopyrazine biosynthetic process|up regulation of dibenzopyrazine biosynthetic process|up regulation of dibenzo-p-diazine biosynthesis|positive regulation of dibenzopyrazine biosynthetic process|up regulation of phenazine biosynthetic process|up regulation of azophenylene biosynthetic process|activation of acridizine biosynthetic process|upregulation of dibenzopyrazine biosynthesis|positive regulation of dibenzopyrazine biosynthesis tt 2012-06-14T04:05:10Z biological_process owl:Class GO:0060695 biolink:NamedThing negative regulation of cholesterol transporter activity Any process that decreases the rate, frequency, or extent of cholesterol transporter activity. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:08:34Z biological_process owl:Class GO:0035484 biolink:NamedThing adenine/adenine mispair binding Binding to a double-stranded DNA region containing an A/A mispair. tmpzr1t_l9r_go_relaxed.owl A/A mispair binding bf 2010-04-23T10:54:52Z molecular_function owl:Class GO:0030983 biolink:NamedThing mismatched DNA binding Binding to a double-stranded DNA region containing one or more mismatches. tmpzr1t_l9r_go_relaxed.owl mispair binding|mispaired DNA binding GO:0032134 molecular_function owl:Class GO:0033625 biolink:NamedThing positive regulation of integrin activation Any process that activates or increases the frequency, rate, or extent of integrin activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of integrin complex activation biological_process owl:Class GO:0034136 biolink:NamedThing negative regulation of toll-like receptor 2 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 2 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR2 signaling pathway|negative regulation of toll-like receptor 2 signalling pathway biological_process owl:Class GO:1901234 biolink:NamedThing positive regulation of convergent extension involved in axis elongation Any process that activates or increases the frequency, rate or extent of convergent extension involved in axis elongation. tmpzr1t_l9r_go_relaxed.owl up regulation of convergent extension involved in axis elongation|activation of convergent extension involved in axis elongation|upregulation of convergent extension involved in axis elongation|up-regulation of convergent extension involved in axis elongation vk 2012-08-07T14:22:19Z biological_process owl:Class GO:0044173 biolink:NamedThing host cell endoplasmic reticulum-Golgi intermediate compartment membrane The lipid bilayer surrounding any of the compartments of the host cell ER-Golgi intermediate compartment system. tmpzr1t_l9r_go_relaxed.owl host endoplasmic reticulum-Golgi intermediate compartment membrane|host cell ER-Golgi intermediate compartment membrane|host ER-Golgi intermediate compartment membrane jl 2009-09-04T02:46:13Z cellular_component owl:Class GO:0033644 biolink:NamedThing host cell membrane Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905948 biolink:NamedThing ABC-type 3',5'-cyclic GMP transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + 3',5'-cyclic GMP(in) = ADP + phosphate + 3',5'-cyclic GMP(out). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled 3',5'-cyclic GMP transmembrane transporter activity|3',5'-cyclic GMP transmembrane-transporting ATPase activity|ATP-dependent 3',5'-cyclic GMP transmembrane transporter activity|ATPase-coupled cGMP transmembrane transporter activity ha 2017-02-16T15:54:51Z molecular_function owl:Class GO:0032985 biolink:NamedThing protein-carbohydrate complex disassembly The disaggregation of a protein-carbohydrate complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071823 biolink:NamedThing protein-carbohydrate complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-carbohydrate complex. tmpzr1t_l9r_go_relaxed.owl protein-carbohydrate complex subunit organisation mah 2010-09-08T10:03:03Z biological_process owl:Class GO:0047284 biolink:NamedThing dolichyl-xylosyl-phosphate-protein xylosyltransferase activity Catalysis of the reaction: dolichyl D-xylosyl phosphate + protein = dolichol-phosphate + D-xylosylprotein. tmpzr1t_l9r_go_relaxed.owl dolichyl-D-xylosyl-phosphate:protein D-xylosyltransferase activity RHEA:18361|MetaCyc:2.4.2.33-RXN|EC:2.4.2.33 molecular_function owl:Class GO:0042285 biolink:NamedThing xylosyltransferase activity Catalysis of the transfer of a xylosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060988 biolink:NamedThing lipid tube assembly The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in membrane shaping of vesicle membranes as they fuse or undergo fission. tmpzr1t_l9r_go_relaxed.owl lipid tubulation dph 2010-01-11T01:56:59Z biological_process owl:Class GO:0003246 biolink:NamedThing embryonic cardiac muscle cell growth involved in heart morphogenesis The growth of a cardiac muscle cell during the embryonic period, that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl embryonic cardiac muscle physiological hypertrophy dph 2009-10-13T11:46:23Z biological_process owl:Class GO:0061049 biolink:NamedThing cell growth involved in cardiac muscle cell development The growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl cardiac muscle cell hypertrophy|cardiomyocyte growth|heart muscle cell growth dph 2010-02-25T12:56:07Z biological_process owl:Class GO:0036012 biolink:NamedThing cyanelle inner membrane The inner, i.e. lumen-facing, lipid bilayer of the cyanelle envelope; also faces the cyanelle stroma. tmpzr1t_l9r_go_relaxed.owl cyanelle inner envelope membrane bf 2011-10-10T01:48:56Z cellular_component owl:Class GO:0009528 biolink:NamedThing plastid inner membrane The inner, i.e. lumen-facing, lipid bilayer of the plastid envelope; also faces the plastid stroma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032969 biolink:NamedThing endosomal scaffold complex A protein complex that contains MAPKSP1 (MP1, Map2k1ip1) and ROBLD3 (p14, Mapbpip), is anchored to late endosomes, and is involved in selective activation of the ERK1 in ERK/MAPK signaling. tmpzr1t_l9r_go_relaxed.owl MP1-p14 scaffolding complex|endosomal adaptor complex cellular_component owl:Class GO:0042413 biolink:NamedThing carnitine catabolic process The chemical reactions and pathways resulting in the breakdown of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl vitamin Bt catabolic process|carnitine degradation|vitamin Bt catabolism|carnitine catabolism|carnitine breakdown biological_process owl:Class GO:0009437 biolink:NamedThing carnitine metabolic process The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl carnitine metabolism|vitamin Bt metabolism|vitamin Bt metabolic process biological_process owl:Class GO:1905001 biolink:NamedThing negative regulation of membrane repolarization during atrial cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of membrane repolarization during atrial cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl down regulation of atrial repolarization|inhibition of membrane repolarization during atrial cardiac muscle cell action potential|downregulation of electrocardiogram QRS complex|downregulation of atrial repolarization|negative regulation of electrocardiogram QRS complex|down-regulation of atrial repolarization|down-regulation of membrane repolarization during atrial cardiac muscle cell action potential|down regulation of electrocardiogram QRS complex|downregulation of membrane repolarization during atrial cardiac muscle cell action potential|negative regulation of atrial repolarization|down regulation of membrane repolarization during atrial cardiac muscle cell action potential|down-regulation of electrocardiogram QRS complex|inhibition of atrial repolarization|inhibition of electrocardiogram QRS complex rph 2016-03-01T13:28:13Z biological_process owl:Class GO:0006313 biolink:NamedThing transposition, DNA-mediated Any process involved in a type of transpositional recombination which occurs via a DNA intermediate. tmpzr1t_l9r_go_relaxed.owl Class II transposition|Tc3 transposition|DNA transposition|P-element excision|P-element transposition|Tc1/mariner transposition GO:0006317|GO:0006318 biological_process owl:Class GO:0010832 biolink:NamedThing negative regulation of myotube differentiation Any process that decreases the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010830 biolink:NamedThing regulation of myotube differentiation Any process that modulates the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901209 biolink:NamedThing positive regulation of heart looping Any process that activates or increases the frequency, rate or extent of heart looping. tmpzr1t_l9r_go_relaxed.owl up-regulation of heart looping|activation of cardiac looping|up regulation of heart looping|upregulation of cardiac looping|up-regulation of cardiac looping|up regulation of cardiac looping|upregulation of heart looping|positive regulation of cardiac looping|activation of heart looping rl 2012-07-31T07:16:18Z biological_process owl:Class GO:0061041 biolink:NamedThing regulation of wound healing Any process that modulates the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:14:37Z biological_process owl:Class GO:0002097 biolink:NamedThing tRNA wobble base modification The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038091 biolink:NamedThing positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a platelet-derived growth factor receptor (PDGFR) on the surface of a cell, which activates or increases the frequency, rate or extent of cell proliferation. tmpzr1t_l9r_go_relaxed.owl VEGF-A-induced cell proliferation|positive regulation of cell proliferation by VEGF/PDGFR signaling pathway|positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signalling pathway bf 2012-02-02T03:45:49Z biological_process owl:Class GO:0038086 biolink:NamedThing VEGF-activated platelet-derived growth factor receptor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a platelet-derived growth factor receptor (PDGFR) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl vascular endothelial growth factor-activated platelet-derived growth factor receptor signaling pathway|VEGF-A/PDGFR signaling|VEGF-activated PDGFR signalling pathway|VEGF/PDGFR signaling pathway|VEGF-activated platelet-derived growth factor receptor signalling pathway bf 2012-02-01T03:05:43Z biological_process owl:Class GO:0006140 biolink:NamedThing regulation of nucleotide metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of nucleotide metabolism biological_process owl:Class GO:0070220 biolink:NamedThing aerobic sulfur oxidation A sulfur oxidation process that proceeds via the reaction catalyzed by sulfur dioxygenase, and requires the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic sulphur oxidation MetaCyc:SULFUROX-PWY biological_process owl:Class GO:0048023 biolink:NamedThing positive regulation of melanin biosynthetic process Any process that activates or increases the rate or extent of the chemical reactions and pathways resulting in the formation of melanin. tmpzr1t_l9r_go_relaxed.owl stimulation of melanin biosynthetic process|positive regulation of melanin biosynthesis|activation of melanin biosynthetic process|positive regulation of melanin formation|positive regulation of melanin synthesis|up-regulation of melanin biosynthetic process|positive regulation of melanin anabolism|up regulation of melanin biosynthetic process|upregulation of melanin biosynthetic process biological_process owl:Class GO:0051650 biolink:NamedThing establishment of vesicle localization The directed movement of a vesicle to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of vesicle localisation biological_process owl:Class GO:0060130 biolink:NamedThing thyroid-stimulating hormone-secreting cell development The process whose specific outcome is the progression of a thyroid-stimulating hormone-secreting cell over time, from its formation to the mature structure. A thyroid-stimulating hormone-secreting cell is a basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. tmpzr1t_l9r_go_relaxed.owl thyrotrope development|thyroid stimulating hormone secreting cell development|beta-basophil development|thyrotroph development|TSH-secreting cell development biological_process owl:Class GO:0043481 biolink:NamedThing anthocyanin accumulation in tissues in response to UV light The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043479 biolink:NamedThing pigment accumulation in tissues in response to UV light The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061259 biolink:NamedThing mesonephric glomerular mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:22:45Z biological_process owl:Class GO:0072008 biolink:NamedThing glomerular mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T01:59:33Z biological_process owl:Class GO:0009639 biolink:NamedThing response to red or far red light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903196 biolink:NamedThing negative regulation of L-dopa biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of L-dopa biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of L-dopa synthesis|inhibition of L-dopa biosynthetic process|inhibition of L-dopa biosynthesis|downregulation of L-dopa biosynthetic process|negative regulation of L-dopa formation|down-regulation of L-dopa biosynthesis|down-regulation of L-dopa synthesis|downregulation of L-dopa biosynthesis|down regulation of L-dopa anabolism|negative regulation of L-dopa biosynthesis|downregulation of L-dopa synthesis|down regulation of L-dopa formation|down regulation of L-dopa biosynthetic process|down-regulation of L-dopa biosynthetic process|down regulation of L-dopa biosynthesis|negative regulation of L-dopa synthesis|down-regulation of L-dopa anabolism|downregulation of L-dopa formation|down regulation of L-dopa synthesis|down-regulation of L-dopa formation|downregulation of L-dopa anabolism|inhibition of L-dopa anabolism|inhibition of L-dopa formation|negative regulation of L-dopa anabolism bf 2014-07-21T09:12:44Z biological_process owl:Class GO:1903195 biolink:NamedThing regulation of L-dopa biosynthetic process Any process that modulates the frequency, rate or extent of L-dopa biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of L-dopa formation|regulation of L-dopa biosynthesis|regulation of L-dopa synthesis|regulation of L-dopa anabolism bf 2014-07-21T09:12:37Z biological_process owl:Class GO:0090205 biolink:NamedThing positive regulation of cholesterol metabolic process Any process that increases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-23T10:27:37Z biological_process owl:Class GO:0015948 biolink:NamedThing methanogenesis The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes. tmpzr1t_l9r_go_relaxed.owl methane biosynthetic process|methane biosynthesis Wikipedia:Methanogenesis|UM-BBD_pathwayID:meth biological_process owl:Class GO:0015947 biolink:NamedThing methane metabolic process The chemical reactions and pathways involving methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes. tmpzr1t_l9r_go_relaxed.owl methane metabolism biological_process owl:Class GO:0046005 biolink:NamedThing positive regulation of circadian sleep/wake cycle, REM sleep Any process that activates or increases the duration or quality of rapid eye movement (REM) sleep. tmpzr1t_l9r_go_relaxed.owl stimulation of circadian sleep/wake cycle, REM sleep|positive regulation of REM sleep|up-regulation of circadian sleep/wake cycle, REM sleep|activation of circadian sleep/wake cycle, REM sleep|up regulation of circadian sleep/wake cycle, REM sleep|upregulation of circadian sleep/wake cycle, REM sleep biological_process owl:Class GO:0002311 biolink:NamedThing gamma-delta T cell proliferation involved in immune response The expansion of a gamma-delta T cell population by cell division as part of an immune response. tmpzr1t_l9r_go_relaxed.owl gamma-delta T-lymphocyte proliferation during immune response|gamma-delta T lymphocyte proliferation during immune response|gamma-delta T cell proliferation during immune response|gamma-delta T-cell proliferation during immune response biological_process owl:Class GO:0046630 biolink:NamedThing gamma-delta T cell proliferation The expansion of a gamma-delta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl gamma-delta T-lymphocyte proliferation|gamma-delta T lymphocyte proliferation|gamma-delta T-cell proliferation biological_process owl:Class GO:0007094 biolink:NamedThing mitotic spindle assembly checkpoint signaling A signal transduction process that contributes to a mitotic cell cycle spindle assembly checkpoint, that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl mitotic checkpoint|mitotic cell cycle spindle assembly checkpoint|mitotic spindle assembly checkpoint|signaling cascade involved in SAC-independent checkpoint|mitotic spindle assembly checkpoint signalling|signaling cascade involved in Dma1-dependent checkpoint|signalling cascade involved in Dma1-dependent checkpoint|signalling pathway involved in Dma1-dependent checkpoint|signal transduction involved in SAC-independent checkpoint|Mad2-dependent checkpoint|SAC-independent checkpoint|signal transduction involved in mitotic spindle assembly checkpoint|signalling cascade involved in SAC-independent checkpoint|signaling pathway involved in SAC-independent checkpoint|signal transduction involved in Dma1-dependent checkpoint|signal transduction involved in mitotic cell cycle spindle assembly checkpoint|Dma1-dependent checkpoint|signaling pathway involved in Dma1-dependent checkpoint|signalling pathway involved in SAC-independent checkpoint https://github.com/geneontology/go-ontology/issues/20935|https://github.com/geneontology/go-ontology/issues/19810 GO:1902420|GO:0072480|GO:0044810 biological_process owl:Class GO:0071174 biolink:NamedThing mitotic spindle checkpoint signaling A signaling process that contributes to a mitotic cell cycle checkpoint that originates from the spindle and delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, the completion of anaphase until chromosomes are attached to the spindle, or mitotic exit and cytokinesis when the spindle does not form. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in mitotic cell cycle spindle checkpoint|topo II checkpoint|mitotic spindle checkpoint|signal transduction involved in mitotic spindle checkpoint|mitotic cell cycle spindle checkpoint|topoisomerase II checkpoint https://github.com/geneontology/go-ontology/issues/20935 Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of spindle checkpoint (assembly, orientation checkpoints). mah 2009-11-23T12:41:36Z GO:0072477 biological_process owl:Class GO:0016482 biolink:NamedThing cytosolic transport The directed movement of substances or organelles within the cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901556 biolink:NamedThing response to candesartan Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a candesartan stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2012-11-02T09:46:13Z biological_process owl:Class GO:0003154 biolink:NamedThing BMP signaling pathway involved in determination of left/right symmetry A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the determination of left/right symmetry. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in determination of left/right symmetry|BMP signaling pathway involved in determination of left/right asymmetry tb 2009-09-24T05:34:57Z biological_process owl:Class GO:0140097 biolink:NamedThing catalytic activity, acting on DNA Catalytic activity that acts to modify DNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225 pg 2017-09-14T12:03:51Z molecular_function owl:Class GO:0015519 biolink:NamedThing D-xylose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: D-xylose(out) + H+(out) = D-xylose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl D-xylose:hydrogen symporter activity molecular_function owl:Class GO:0015148 biolink:NamedThing D-xylose transmembrane transporter activity Enables the transfer of D-xylose from one side of a membrane to the other. D-xylose (the naturally occurring enantiomer is always D-) is a constituent of plant polysaccharides. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034924 biolink:NamedThing cis-3,4-phenanthrenedihydrodiol-4-carboxylate dehydrogenase activity Catalysis of the reaction: cis-3,4-phenanthrenedihydrodiol-4-carboxylate = 3,4-dihydroxyphenanthrene + H+ + 2 e- + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0940 molecular_function owl:Class GO:0002917 biolink:NamedThing regulation of peripheral B cell anergy Any process that modulates the frequency, rate, or extent of peripheral B cell anergy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002712 biolink:NamedThing regulation of B cell mediated immunity Any process that modulates the frequency, rate, or extent of B cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl regulation of B-cell mediated immunity|regulation of B-lymphocyte mediated immunity|regulation of B lymphocyte mediated immunity biological_process owl:Class GO:0097531 biolink:NamedThing mast cell migration The movement of a mast cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-11T14:01:41Z biological_process owl:Class GO:0036471 biolink:NamedThing cellular response to glyoxal Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glyoxal stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2014-07-21T11:14:33Z biological_process owl:Class GO:0052104 biolink:NamedThing induction by symbiont of host systemic acquired resistance Any process in which a symbiont activates systemic acquired resistance in the host organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of SAR in host|positive regulation by organism of systemic acquired resistance in other organism involved in symbiotic interaction|positive regulation by symbiont of host systemic acquired resistance|up-regulation by symbiont of systemic acquired resistance in host|up regulation by symbiont of systemic acquired resistance in host|activation by organism of systemic acquired resistance in host|induction by symbiont of systemic acquired resistance in host|induction by organism of systemic acquired resistance in other organism involved in symbiotic interaction|activation by organism of SAR in host|stimulation by symbiont of systemic acquired resistance in host|upregulation by symbiont of systemic acquired resistance in host|positive regulation by symbiont of systemic acquired resistance in host GO:0052537|GO:0052289|GO:0052535 biological_process owl:Class GO:0052390 biolink:NamedThing induction by symbiont of host innate immune response The activation by a symbiont of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by symbiont of host innate immunity|induction by organism of innate immune response in other organism involved in symbiotic interaction|positive regulation of host innate immune response|positive regulation by symbiont of host innate immune response|stimulation by symbiont of host innate immunity|up regulation by symbiont of host innate immunity|induction of host innate immunity|activation by organism of host innate immune response|up-regulation by symbiont of host innate immunity|induction by symbiont of host innate immunity|activation by organism of host innate immunity|positive regulation of innate immune response in other organism|induction by organism of host innate immune response|positive regulation by symbiont of host innate immunity|activation by symbiont of host innate immunity GO:0052382|GO:0052305|GO:0052166 biological_process owl:Class GO:0000073 biolink:NamedThing initial mitotic spindle pole body separation The release of duplicated mitotic spindle pole bodies (SPBs) that begins with the nucleation of microtubules from each SPB within the nucleus, leading to V-shaped spindle microtubules. Interpolar microtubules that elongate from each pole are interconnected, forming overlapping microtubules. Capturing and antiparallel sliding apart of microtubules promotes the initial separation of the SPB. tmpzr1t_l9r_go_relaxed.owl GO:0030475 biological_process owl:Class GO:0110100 biolink:NamedThing spindle pole body separation The release of duplicated spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane. Duplicated SPBs are connected by a bridge structure that is severed in order to release the SPBs from one another. Following liberation, SPBs diffuse through the nuclear membrane until they are across from each other. SPB separation must take place in order for a bipolar spindle to assemble. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. kmv 2018-03-06T15:09:28Z biological_process owl:Class GO:0032732 biolink:NamedThing positive regulation of interleukin-1 production Any process that activates or increases the frequency, rate, or extent of interleukin-1 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-1 production|up regulation of interleukin-1 production|upregulation of interleukin-1 production|up-regulation of interleukin-1 production|positive regulation of IL-1 production|positive regulation of interleukin-1 biosynthetic process|positive regulation of interleukin-1 secretion|activation of interleukin-1 production GO:0045362|GO:0050716 biological_process owl:Class GO:0006599 biolink:NamedThing phosphagen metabolic process The chemical reactions and pathways involving phosphagen, any of a group of guanidine phosphates that occur in muscle and can be used to regenerate ATP from ADP during muscular contraction. tmpzr1t_l9r_go_relaxed.owl phosphagen metabolism biological_process owl:Class GO:0070235 biolink:NamedThing regulation of activation-induced cell death of T cells Any process that modulates the occurrence or rate of activation-induced cell death of T cells. tmpzr1t_l9r_go_relaxed.owl regulation of activation-induced cell death of T-lymphocytes|regulation of antigen-driven apoptosis|regulation of activation-induced cell death of T-cells|regulation of activated T cell apoptosis|regulation of AICD|regulation of activation-induced cell death of T lymphocytes biological_process owl:Class GO:0032455 biolink:NamedThing nerve growth factor processing The generation of a mature nerve growth factor (NGF) by proteolysis of a precursor. tmpzr1t_l9r_go_relaxed.owl NGF processing|beta-nerve growth factor processing biological_process owl:Class GO:0016486 biolink:NamedThing peptide hormone processing The generation of a mature peptide hormone by posttranslational processing of a prohormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036100 biolink:NamedThing leukotriene catabolic process The chemical reactions and pathways resulting in the breakdown of a leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid. tmpzr1t_l9r_go_relaxed.owl leukotriene degradation|leukotriene catabolism|leukotriene breakdown bf 2012-01-27T01:26:24Z biological_process owl:Class GO:0019079 biolink:NamedThing viral genome replication Any process involved directly in viral genome replication, including viral nucleotide metabolism. tmpzr1t_l9r_go_relaxed.owl viral replication|sigma virus replication biological_process owl:Class GO:1901407 biolink:NamedThing regulation of phosphorylation of RNA polymerase II C-terminal domain Any process that modulates the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain. tmpzr1t_l9r_go_relaxed.owl regulation of generation of hyperphosphorylated CTD of RNA polymerase II|regulation of generation of II(0) form of RNA polymerase II|regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|regulation of CTD domain phosphorylation of RNA polymerase II vw 2012-10-01T14:39:50Z biological_process owl:Class GO:0036014 biolink:NamedThing cyanelle intermembrane space The region between the inner and outer lipid bilayers of the cyanelle envelope; includes the peptidoglycan layer. tmpzr1t_l9r_go_relaxed.owl cyanelle periplasm|cyanelle envelope lumen bf 2011-10-10T02:12:28Z cellular_component owl:Class GO:0009529 biolink:NamedThing plastid intermembrane space The region between the inner and outer lipid bilayers of the plastid envelope. tmpzr1t_l9r_go_relaxed.owl plastid envelope lumen cellular_component owl:Class GO:0043416 biolink:NamedThing regulation of skeletal muscle tissue regeneration Any process that modulates the frequency, rate or extent of skeletal muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001639 biolink:NamedThing PLC activating G protein-coupled glutamate receptor activity A G protein-coupled receptor that binds glutamate and is linked to the inositol 1,4,5-trisphosphate/calcium signaling system. tmpzr1t_l9r_go_relaxed.owl phospholipase C activating metabotropic glutamate receptor activity|group I metabotropic glutamate receptor activity|Group I metabotropic glutamate receptor|PLC activating G-protein coupled glutamate receptor activity|PLC activating metabotropic glutamate receptor activity molecular_function owl:Class GO:0098988 biolink:NamedThing G protein-coupled glutamate receptor activity Combining with glutamate and transmitting a signal from one side of the membrane to the other by activating an associated G-protein, initiating a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G-protein coupled glutamate receptor activity molecular_function owl:Class GO:0006392 biolink:NamedThing transcription elongation from mitochondrial promoter The extension of an RNA molecule after transcription initiation and promoter clearance at mitochondrial promoter by the addition of ribonucleotides catalyzed by a mitchondrial RNA polymerase. tmpzr1t_l9r_go_relaxed.owl RNA elongation from mitochondrial promoter biological_process owl:Class GO:0006354 biolink:NamedThing DNA-templated transcription, elongation The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase. tmpzr1t_l9r_go_relaxed.owl RNA elongation|transcription elongation from bacterial-type RNA polymerase promoter|transcriptional elongation, DNA-dependent|DNA-dependent transcription, elongation|transcription elongation, DNA-dependent|RNA elongation from bacterial-type RNA polymerase promoter GO:0001124 biological_process owl:Class GO:1903630 biolink:NamedThing regulation of aminoacyl-tRNA ligase activity Any process that modulates the frequency, rate or extent of aminoacyl-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of aminoacyl-tRNA synthetase activity|regulation of aminoacyl-tRNA synthetase auxiliary protein activity sl 2014-11-20T00:22:04Z biological_process owl:Class GO:1904025 biolink:NamedThing positive regulation of glucose catabolic process to lactate via pyruvate Any process that activates or increases the frequency, rate or extent of glucose catabolic process to lactate via pyruvate. tmpzr1t_l9r_go_relaxed.owl up-regulation of homofermentative lactate fermentation|up-regulation of homolactic fermentation|upregulation of homolactate fermentation|positive regulation of homofermentation|upregulation of homofermentative pathway|up regulation of homofermentative pathway|up regulation of glucose fermentation to lactate via pyruvate|up regulation of homolactate fermentation|activation of glucose catabolic process to lactate via pyruvate|up-regulation of glucose catabolic process to lactate via pyruvate|upregulation of homolactic fermentation|activation of homolactic fermentation|positive regulation of homolactate fermentation|up regulation of homofermentative lactate fermentation|activation of homofermentation|up-regulation of glucose fermentation to lactate via pyruvate|activation of glucose fermentation to lactate via pyruvate|up-regulation of homofermentative pathway|up-regulation of homofermentation|up-regulation of homolactate fermentation|up regulation of homolactic fermentation|upregulation of homofermentation|positive regulation of homolactic fermentation|positive regulation of homofermentative pathway|up regulation of glucose catabolic process to lactate via pyruvate|upregulation of homofermentative lactate fermentation|upregulation of glucose catabolic process to lactate via pyruvate|upregulation of glucose fermentation to lactate via pyruvate|positive regulation of homofermentative lactate fermentation|activation of homofermentative pathway|positive regulation of glucose fermentation to lactate via pyruvate|activation of homofermentative lactate fermentation|activation of homolactate fermentation|up regulation of homofermentation dph 2015-03-11T16:57:44Z biological_process owl:Class GO:0035666 biolink:NamedThing TRIF-dependent toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the TRIF adaptor mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl TRIF-dependent TLR signaling pathway|TRIF-dependent toll-like receptor signalling pathway|Toll/IL-1 receptor (TIR) domain-containing adaptor-dependent TLR signaling pathway bf 2011-02-01T02:35:35Z biological_process owl:Class GO:0002756 biolink:NamedThing MyD88-independent toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor not relying on the MyD88 adaptor molecule. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl MyD88-independent toll-like receptor signalling pathway|MyD88-independent TLR signaling pathway biological_process owl:Class GO:0051607 biolink:NamedThing defense response to virus Reactions triggered in response to the presence of a virus that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl defence response to virus|antiviral response|defense response to viruses biological_process owl:Class GO:0009615 biolink:NamedThing response to virus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus. tmpzr1t_l9r_go_relaxed.owl response to viruses biological_process owl:Class GO:0032829 biolink:NamedThing regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation Any process that modulates the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells. tmpzr1t_l9r_go_relaxed.owl regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0043370 biolink:NamedThing regulation of CD4-positive, alpha-beta T cell differentiation Any process that modulates the frequency, rate, or extent of CD4-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of CD4-positive T-lymphocyte differentiation|regulation of CD4-positive T lymphocyte differentiation|regulation of CD4-positive, alpha beta T cell differentiation|regulation of CD4-positive, alpha beta T-lymphocyte differentiation|regulation of CD4-positive, alpha beta T cell development|regulation of CD4-positive, alpha beta T lymphocyte differentiation|regulation of CD4-positive T-cell differentiation|regulation of CD4-positive, alpha beta T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0090251 biolink:NamedThing protein localization involved in establishment of planar polarity Any process in which a protein is transported to, and/or maintained in, a specific location in a cell that contributes to the establishment of planar polarity. tmpzr1t_l9r_go_relaxed.owl protein localisation involved in establishment of planar polarity tb 2010-01-22T11:31:32Z biological_process owl:Class GO:0120236 biolink:NamedThing negative regulation of posttranslational protein targeting to membrane, translocation Any process that stops, prevents or reduces the frequency, rate or extent of posttranslational protein translocation through the ER membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of N-terminal signal peptide-independent translocation into the ER|negative regulation of posttranslational endoplasmic reticulum membrane protein translocation|negative regulation of SRP-independent endoplasmic reticulum protein-membrane targeting, translocation https://github.com/geneontology/go-ontology/issues/19791 krc 2020-08-03T17:12:53Z biological_process owl:Class GO:0034763 biolink:NamedThing negative regulation of transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl negative regulation of membrane transport|down regulation of transmembrane transport|down-regulation of transmembrane transport|downregulation of transmembrane transport|inhibition of transmembrane transport biological_process owl:Class GO:0043556 biolink:NamedThing regulation of translation in response to oxidative stress Any process that modulates the frequency, rate or extent of translation as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032055 biolink:NamedThing negative regulation of translation in response to stress Any process that stops, prevents or reduces the rate of translation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl down regulation of translation in response to stress|inhibition of translation in response to stress|down-regulation of translation in response to stress|downregulation of translation in response to stress biological_process owl:Class GO:1903591 biolink:NamedThing negative regulation of lysozyme activity Any process that stops, prevents or reduces the frequency, rate or extent of lysozyme activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of L-7001|downregulation of L-7001|negative regulation of lysozyme g|down-regulation of 1,4-N-acetylmuramidase activity|downregulation of muramidase activity|down-regulation of mucopeptide N-acetylmuramoylhydrolase activity|down-regulation of lysozyme activity|down regulation of peptidoglycan N-acetylmuramoylhydrolase activity|down regulation of PR1-lysozyme|down-regulation of mucopeptide glucohydrolase activity|downregulation of mucopeptide N-acetylmuramoylhydrolase activity|negative regulation of muramidase activity|inhibition of peptidoglycan N-acetylmuramoylhydrolase activity|downregulation of 1,4-N-acetylmuramidase activity|negative regulation of globulin G1|down regulation of mucopeptide glucohydrolase activity|inhibition of PR1-lysozyme|inhibition of muramidase activity|downregulation of lysozyme g|down-regulation of peptidoglycan N-acetylmuramoylhydrolase activity|down regulation of muramidase activity|inhibition of globulin G|negative regulation of mucopeptide glucohydrolase activity|downregulation of N,O-diacetylmuramidase activity|down regulation of N,O-diacetylmuramidase activity|downregulation of globulin G1|down-regulation of globulin G1|negative regulation of globulin G|inhibition of N,O-diacetylmuramidase activity|inhibition of mucopeptide N-acetylmuramoylhydrolase activity|downregulation of peptidoglycan N-acetylmuramoylhydrolase activity|inhibition of mucopeptide glucohydrolase activity|inhibition of globulin G1|downregulation of lysozyme activity|inhibition of lysozyme g|negative regulation of mucopeptide N-acetylmuramoylhydrolase activity|down regulation of globulin G|down regulation of L-7001|inhibition of 1,4-N-acetylmuramidase activity|down-regulation of muramidase activity|inhibition of L-7001|down regulation of globulin G1|negative regulation of PR1-lysozyme|down regulation of lysozyme g|down-regulation of globulin G|negative regulation of N,O-diacetylmuramidase activity|downregulation of globulin G|down regulation of 1,4-N-acetylmuramidase activity|down-regulation of L-7001|down regulation of mucopeptide N-acetylmuramoylhydrolase activity|downregulation of mucopeptide glucohydrolase activity|inhibition of lysozyme activity|down-regulation of lysozyme g|down-regulation of N,O-diacetylmuramidase activity|negative regulation of 1,4-N-acetylmuramidase activity|downregulation of PR1-lysozyme|down regulation of lysozyme activity|down-regulation of PR1-lysozyme|negative regulation of peptidoglycan N-acetylmuramoylhydrolase activity mr 2014-11-05T21:41:30Z biological_process owl:Class GO:0051346 biolink:NamedThing negative regulation of hydrolase activity Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds. tmpzr1t_l9r_go_relaxed.owl down regulation of hydrolase activity|hydrolase inhibitor|downregulation of hydrolase activity|inhibition of hydrolase activity|down-regulation of hydrolase activity biological_process owl:Class GO:1903397 biolink:NamedThing positive regulation of secondary cell septum biogenesis Any process that activates or increases the frequency, rate or extent of secondary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of secondary cell septum biogenesis|activation of secondary cell septum biogenesis|upregulation of secondary cell septum biogenesis|up-regulation of secondary cell septum biogenesis di 2014-08-29T21:42:34Z biological_process owl:Class GO:0140281 biolink:NamedThing positive regulation of mitotic division septum assembly Any process that activates or increases the frequency, rate or extent of mitotic division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|activation of septin assembly and septum formation involved in mitotic cell cycle|upregulation of septin assembly and septum formation involved in mitotic cell cycle|activation of mitotic division septum assembly|up-regulation of division septum formation involved in mitotic cell cycle|up regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|up regulation of septin assembly and septum formation involved in mitotic cell cycle|activation of formation of division septum involved in mitotic cell cycle|positive regulation of formation of division septum involved in mitotic cell cycle|up-regulation of septin assembly and septum formation involved in mitotic cell cycle|upregulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|positive regulation of division septum formation involved in mitotic cell cycle|upregulation of formation of division septum involved in mitotic cell cycle|activation of division septum formation involved in mitotic cell cycle|upregulation of division septum formation involved in mitotic cell cycle|up-regulation of mitotic division septum assembly|up regulation of mitotic division septum assembly|up regulation of division septum formation involved in mitotic cell cycle|activation of septin assembly and septum biosynthesis involved in mitotic cell cycle|up-regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|up-regulation of formation of division septum involved in mitotic cell cycle|positive regulation of septin assembly and septum formation involved in mitotic cell cycle|up regulation of formation of division septum involved in mitotic cell cycle pg 2018-10-08T10:03:30Z biological_process owl:Class GO:0032704 biolink:NamedThing negative regulation of interleukin-20 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-20 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-20 production|negative regulation of interleukin-20 biosynthetic process|down-regulation of interleukin-20 production|inhibition of interleukin-20 production|downregulation of interleukin-20 production|negative regulation of IL-20 production GO:0045388 biological_process owl:Class GO:0003314 biolink:NamedThing heart rudiment morphogenesis The process in which the anatomical structures of the heart rudiment are generated and organized. tmpzr1t_l9r_go_relaxed.owl heart cone morphogenesis dph 2009-10-27T08:38:04Z biological_process owl:Class GO:0002009 biolink:NamedThing morphogenesis of an epithelium The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube. tmpzr1t_l9r_go_relaxed.owl epithelium morphogenesis biological_process owl:Class GO:0010127 biolink:NamedThing mycothiol-dependent detoxification The chemical reactions using mycothiol to convert an alkylating agent to an S-conjugate of mycothiol. The latter is cleaved to release mercapturic acid which is excreted from the cell. tmpzr1t_l9r_go_relaxed.owl mycothiol-dependent detoxification of alkylating agent MetaCyc:PWY1G-170|MetaCyc:PWY1G-1 biological_process owl:Class GO:0098754 biolink:NamedThing detoxification Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002659 biolink:NamedThing negative regulation of peripheral tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of peripheral tolerance induction. tmpzr1t_l9r_go_relaxed.owl down-regulation of peripheral tolerance induction|downregulation of peripheral tolerance induction|down regulation of peripheral tolerance induction|inhibition of peripheral tolerance induction biological_process owl:Class GO:0002653 biolink:NamedThing negative regulation of tolerance induction dependent upon immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction dependent upon immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of tolerance induction dependent upon immune response|negative regulation of immune response-dependent tolerance induction|down-regulation of tolerance induction dependent upon immune response|downregulation of tolerance induction dependent upon immune response|down regulation of tolerance induction dependent upon immune response biological_process owl:Class GO:0003198 biolink:NamedThing epithelial to mesenchymal transition involved in endocardial cushion formation A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the endocardial cushion. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:27:42Z biological_process owl:Class GO:0060317 biolink:NamedThing cardiac epithelial to mesenchymal transition A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl heart epithelial to mesenchymal transition biological_process owl:Class GO:0031463 biolink:NamedThing Cul3-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul3 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a BTB-domain-containing protein. tmpzr1t_l9r_go_relaxed.owl CRL3 complex|cullin-RING ligase 3|SCF3 complex|BCR3 complex|CDL3 complex|BC3B complex cellular_component owl:Class GO:0031461 biolink:NamedThing cullin-RING ubiquitin ligase complex Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity. tmpzr1t_l9r_go_relaxed.owl cullin-RING ligase|CRL complex|cullin complex cellular_component owl:Class GO:1901820 biolink:NamedThing alpha-zeacarotene catabolic process The chemical reactions and pathways resulting in the breakdown of alpha-zeacarotene. tmpzr1t_l9r_go_relaxed.owl alpha-zeacarotene catabolism|alpha-zeacarotene breakdown|alpha-zeacarotene degradation yaf 2013-01-22T10:51:06Z biological_process owl:Class GO:1900049 biolink:NamedThing regulation of histone exchange Any process that modulates the frequency, rate or extent of histone exchange. tmpzr1t_l9r_go_relaxed.owl regulation of histone chaperone|regulation of histone replacement|regulation of histone displacement se 2012-01-19T10:59:02Z biological_process owl:Class GO:0021833 biolink:NamedThing cell-matrix adhesion involved in tangential migration using cell-cell interactions The interaction of a cell and the extracellular matrix involved in the directed tangential movement of cells mediated by cell-cell interactions in the developing cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003430 biolink:NamedThing growth plate cartilage chondrocyte growth The growth of a growth plate cartilage chondrocyte, where growth contributes to the progression of the chondrocyte over time from one condition to another. tmpzr1t_l9r_go_relaxed.owl growth plate cartilage chondrocyte hypertrophy dph 2009-12-22T12:29:19Z biological_process owl:Class GO:0060560 biolink:NamedThing developmental growth involved in morphogenesis The increase in size or mass of an anatomical structure that contributes to the structure attaining its shape. tmpzr1t_l9r_go_relaxed.owl differential growth dph 2009-04-28T08:42:53Z biological_process owl:Class GO:0045311 biolink:NamedThing invasive growth in response to pheromone The growth of colonies in filamentous chains of cells as a result of a pheromone stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036267 biolink:NamedThing invasive filamentous growth The growth of colonies in filamentous chains of cells into a substrate. tmpzr1t_l9r_go_relaxed.owl invasive growth bf 2012-07-02T01:42:24Z biological_process owl:Class GO:0018642 biolink:NamedThing chlorophenol 4-monooxygenase activity Catalysis of the addition or substitution of an OH group on C4 of a halogenated phenol. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_enzymeID:e0252 molecular_function owl:Class GO:0090585 biolink:NamedThing protein-phosphocysteine-L-ascorbate-phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + L-ascorbate(out) = protein cysteine + L-ascorbate-6-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0090563 biolink:NamedThing protein-phosphocysteine-sugar phosphotransferase activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + sugar(out) = protein cysteine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl tb 2014-04-08T14:58:00Z molecular_function owl:Class GO:0003226 biolink:NamedThing right ventricular compact myocardium morphogenesis The process in which the anatomical structures of the right ventricular compact myocardium are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T10:48:42Z biological_process owl:Class GO:0003223 biolink:NamedThing ventricular compact myocardium morphogenesis The process in which the anatomical structures of the compact cardiac ventricle muscle are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T10:34:21Z biological_process owl:Class GO:0047677 biolink:NamedThing arachidonate 8(R)-lipoxygenase activity Catalysis of the reaction: arachidonate + O(2) = (5Z,8R,9E,11Z,14Z)-8-hydroperoxyicosa-5,9,11,14-tetraenoate. tmpzr1t_l9r_go_relaxed.owl 8(R)-lipoxygenase activity|arachidonate 8-lipoxygenase activity|8-lipoxygenase activity|arachidonate:oxygen 8-oxidoreductase activity RHEA:14985|EC:1.13.11.40|MetaCyc:ARACHIDONATE-8-LIPOXYGENASE-RXN|KEGG_REACTION:R01594 This activity produces the R-enantiomer of HPETE, 8(R)-HPETE. For the reaction producing the S-enantiomer, see GO:0036403. molecular_function owl:Class GO:0008829 biolink:NamedThing dCTP deaminase activity Catalysis of the reaction: dCTP + H2O = dUTP + NH3. tmpzr1t_l9r_go_relaxed.owl dCTP aminohydrolase activity|5-methyl-dCTP deaminase activity|deoxycytidine triphosphate deaminase activity RHEA:22680|MetaCyc:DCTP-DEAM-RXN|Reactome:R-HSA-180632|EC:3.5.4.13 molecular_function owl:Class GO:0048476 biolink:NamedThing Holliday junction resolvase complex An endodeoxyribonuclease complex that resolves the 4-way DNA intermediates of a Holliday junction into two separate duplex DNA molecules. Can be branch-migration associated. tmpzr1t_l9r_go_relaxed.owl Mus81-Eme1 complex|Mus81-Eme2 holliday resolvase complex|Mus81-Eme1 holliday resolvase complex|Mus81-Eme2 complex|resolvasome cellular_component owl:Class GO:1905347 biolink:NamedThing endodeoxyribonuclease complex A protein complex which is capable of endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl Mus81-Eme1 complex|Mus81-Eme2 complex An example of this is MUS81 in human (Q96NY9) in PMID:18413719 (inferred from direct assay). bhm 2016-08-03T12:20:12Z cellular_component owl:Class GO:0060956 biolink:NamedThing endocardial cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. The endocardium is the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:20:39Z biological_process owl:Class GO:1905737 biolink:NamedThing positive regulation of L-proline import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-proline import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-04T20:42:33Z biological_process owl:Class GO:1902836 biolink:NamedThing positive regulation of proline import across plasma membrane Any process that activates or increases the frequency, rate or extent of proline import into cell. tmpzr1t_l9r_go_relaxed.owl activation of proline import into cell|up-regulation of proline import into cell|up regulation of proline import into cell|positive regulation of proline import into cell|upregulation of proline import into cell mah 2014-04-01T13:44:20Z biological_process owl:Class GO:0045521 biolink:NamedThing interleukin-25 receptor binding Binding to an interleukin-25 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-25 receptor ligand|IL-25 molecular_function owl:Class GO:0005126 biolink:NamedThing cytokine receptor binding Binding to a cytokine receptor. tmpzr1t_l9r_go_relaxed.owl hematopoietin/interferon-class (D200-domain) cytokine receptor binding|hematopoietin/interferon-class (D200-domain) cytokine receptor ligand molecular_function owl:Class GO:2000205 biolink:NamedThing positive regulation of ribosomal large subunit export from nucleus Any process that activates or increases the frequency, rate or extent of ribosomal large subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of 60S ribosomal subunit export from nucleus|positive regulation of ribosomal large subunit export from cell nucleus|positive regulation of ribosomal large subunit transport from nucleus to cytoplasm|positive regulation of ribosomal large subunit export out of nucleus|positive regulation of 50S ribosomal subunit export from nucleus|positive regulation of ribosomal large subunit-nucleus export mah 2010-10-26T10:52:42Z biological_process owl:Class GO:2000202 biolink:NamedThing positive regulation of ribosomal subunit export from nucleus Any process that activates or increases the frequency, rate or extent of ribosomal subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of ribosomal subunit export out of nucleus|positive regulation of ribosomal subunit transport from nucleus to cytoplasm|positive regulation of ribosome export from nucleus|positive regulation of ribosomal subunit export from cell nucleus|positive regulation of ribosomal subunit-nucleus export mah 2010-10-26T10:44:36Z biological_process owl:Class GO:1990545 biolink:NamedThing mitochondrial thiamine pyrophosphate transmembrane transport The process in which thiamine pyrophosphate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:47:15Z biological_process owl:Class GO:0030974 biolink:NamedThing thiamine pyrophosphate transmembrane transport The process in which thiamine pyrophosphate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl thiamine pyrophosphate transport|thiamin diphosphate transport|thiamin pyrophosphate transport|thiamine diphosphate transport|TPP transport biological_process owl:Class GO:0031494 biolink:NamedThing regulation of mating type switching Any process that modulates the frequency, rate or extent of mating type switching, the conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030143 biolink:NamedThing COPI-coated inter-Golgi transport vesicle A vesicle that mediates transport of cargo within the Golgi complex (for example, between cisternae of the Golgi stack). tmpzr1t_l9r_go_relaxed.owl inter-Golgi transport constitutive secretory pathway transport vesicle NIF_Subcellular:sao1382918459 GO:0005807 cellular_component owl:Class GO:0030133 biolink:NamedThing transport vesicle Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell. tmpzr1t_l9r_go_relaxed.owl Golgi-vacuole transport vesicle|constitutive secretory pathway transport vesicle|Golgi to vacuole transport vesicle|secretory vesicle NIF_Subcellular:sao885490876 Note that the term 'secretory vesicle' is sometimes used in this sense, but can also mean 'secretory granule ; GO:0030141'. cellular_component owl:Class GO:0090487 biolink:NamedThing secondary metabolite catabolic process The chemical reactions and pathways resulting in the breakdown of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. tmpzr1t_l9r_go_relaxed.owl secondary metabolite breakdown|secondary metabolite catabolism|secondary metabolite degradation tb 2012-10-15T16:43:09Z biological_process owl:Class GO:1905843 biolink:NamedThing regulation of cellular response to gamma radiation Any process that modulates the frequency, rate or extent of cellular response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to gamma ray|regulation of cellular response to gamma-ray photon rz 2017-01-19T10:24:39Z biological_process owl:Class GO:1990928 biolink:NamedThing response to amino acid starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids. tmpzr1t_l9r_go_relaxed.owl sl 2016-02-18T00:18:23Z biological_process owl:Class GO:0022835 biolink:NamedThing transmitter-gated channel activity Enables the transmembrane transfer of a solute by a channel that opens when a specific neurotransmitter has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl extracellular substance gated channel activity|neurotransmitter-gated channel activity molecular_function owl:Class GO:0051160 biolink:NamedThing L-xylitol catabolic process The chemical reactions and pathways resulting in the breakdown of L-xylitol, a five-carbon sugar alcohol derived from xylose by reduction of the carbonyl group. tmpzr1t_l9r_go_relaxed.owl L-xylitol breakdown|L-xylitol degradation|L-xylitol catabolism biological_process owl:Class GO:0035082 biolink:NamedThing axoneme assembly The assembly and organization of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements. tmpzr1t_l9r_go_relaxed.owl flagellar axoneme assembly|axoneme biogenesis|ciliary axoneme assembly|cilium axoneme biogenesis|flagellum axoneme assembly|cilium axoneme assembly Note that cilia and eukaryotic flagella are deemed to be equivalent. GO:0035084|GO:0035083 biological_process owl:Class GO:0050428 biolink:NamedThing 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process The chemical reactions and pathways resulting in the formation of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems. tmpzr1t_l9r_go_relaxed.owl adenosine 3'-phosphate 5'-phosphosulfate biosynthetic process|phosphoadenosine phosphosulfate biosynthetic process|3'-phosphoadenylyl-sulfate biosynthetic process|3'-phosphoadenosine 5'-phosphosulphate biosynthesis|3'-phosphoadenosine 5'-phosphosulfate synthesis|3'-phosphoadenosine 5'-phosphosulfate formation|3'-phosphoadenosine 5'-phosphosulfate biosynthesis|3'-phosphoadenosine 5'-phosphosulfate anabolism|PAPS biosynthesis|3'-phosphoadenosine 5'-phosphosulphate biosynthetic process|adenosine 3'-phosphate 5'-phosphosulfate biosynthesis|phosphoadenosine phosphosulfate biosynthesis|3'-phosphoadenylyl-sulfate biosynthesis|PAPS biosynthetic process biological_process owl:Class GO:1905766 biolink:NamedThing positive regulation of protection from non-homologous end joining at telomere Any process that activates or increases the frequency, rate or extent of protection from non-homologous end joining at telomere. tmpzr1t_l9r_go_relaxed.owl upregulation of protection from non-homologous end joining at telomere|up-regulation of protection from NHEJ-mediated telomere fusion|upregulation of protection from NHEJ-mediated telomere fusion|positive regulation of protection from NHEJ-mediated telomere fusion|up regulation of protection from NHEJ-mediated telomere fusion|activation of protection from NHEJ-mediated telomere fusion|activation of protection from non-homologous end joining at telomere|up-regulation of protection from non-homologous end joining at telomere|up regulation of protection from non-homologous end joining at telomere nc 2016-12-20T11:28:39Z biological_process owl:Class GO:0033873 biolink:NamedThing petromyzonol sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + 5alpha-cholane-3alpha,7alpha,12alpha,24-tetrol = 3alpha,7alpha,12alpha-trihydroxy-5alpha-cholan-24-yl sulfate + adenosine 3',5'-diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:5alpha-cholan-3alpha,7alpha,12alpha,24-tetrol sulfotransferase activity|PZ-SULT KEGG_REACTION:R07797|MetaCyc:2.8.2.31-RXN|RHEA:16997|EC:2.8.2.31 molecular_function owl:Class GO:0035929 biolink:NamedThing steroid hormone secretion The regulated release of any steroid that acts as a hormone into the circulatory system. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:01:00Z biological_process owl:Class GO:0140353 biolink:NamedThing lipid export from cell The directed movement of a lipid from a cell, into the extracellular region. tmpzr1t_l9r_go_relaxed.owl lipid efflux pg 2019-05-22T11:33:07Z biological_process owl:Class GO:1903055 biolink:NamedThing positive regulation of extracellular matrix organization Any process that activates or increases the frequency, rate or extent of extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl positive regulation of extracellular matrix organization and biogenesis|up-regulation of extracellular matrix organisation|activation of extracellular matrix organization|up regulation of extracellular matrix organization and biogenesis|upregulation of extracellular matrix organisation|positive regulation of extracellular matrix organisation|up regulation of extracellular matrix organisation|upregulation of extracellular matrix organization|upregulation of extracellular matrix organization and biogenesis|up-regulation of extracellular matrix organization|activation of extracellular matrix organisation|activation of extracellular matrix organization and biogenesis|up-regulation of extracellular matrix organization and biogenesis|up regulation of extracellular matrix organization rl 2014-05-23T17:15:53Z biological_process owl:Class GO:0051130 biolink:NamedThing positive regulation of cellular component organization Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell organization|up regulation of cell organization|positive regulation of cellular component organization and biogenesis|upregulation of cell organization|activation of cell organization|positive regulation of cell organisation|stimulation of cell organization biological_process owl:Class GO:1905505 biolink:NamedThing positive regulation of motile cilium assembly Any process that activates or increases the frequency, rate or extent of motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of nodal cilium formation|activation of nodal cilium assembly|up regulation of motile primary cilia assembly|upregulation of nodal cilium assembly|up-regulation of motile primary cilia formation|up-regulation of motile primary cilia assembly|activation of motile primary cilium formation|up-regulation of motile primary cilium assembly|up-regulation of nodal cilium assembly|upregulation of motile primary cilia formation|positive regulation of nodal cilium formation|up regulation of motile primary cilia formation|activation of motile primary cilia assembly|up regulation of nodal cilium assembly|positive regulation of nodal cilium assembly|upregulation of nodal cilium formation|up-regulation of motile primary cilium formation|activation of motile primary cilium assembly|up regulation of motile primary cilium assembly|activation of nodal cilium formation|positive regulation of motile primary cilium formation|positive regulation of motile primary cilia formation|activation of motile primary cilia formation|positive regulation of motile primary cilia assembly|up regulation of motile primary cilium formation|upregulation of motile primary cilium formation|upregulation of motile primary cilium assembly|up regulation of nodal cilium formation|upregulation of motile primary cilia assembly|positive regulation of motile primary cilium assembly krc 2016-09-27T18:28:03Z biological_process owl:Class GO:0006616 biolink:NamedThing SRP-dependent cotranslational protein targeting to membrane, translocation The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen. tmpzr1t_l9r_go_relaxed.owl SRP-dependent cotranslational protein-membrane targeting, translocation|SRP-dependent cotranslational membrane targeting, translocation|translocation during SRP-dependent cotranslational protein targeting to membrane|ER translocation biological_process owl:Class GO:0065002 biolink:NamedThing intracellular protein transmembrane transport The directed movement of proteins in a cell, from one side of a membrane to another by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl intracellular protein transport across a membrane|intracellular membrane translocation of a protein|intracellular protein membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0097463 biolink:NamedThing gemmule Spine-like process found on some neurons, e.g., periglomerular cells of olfactory cortex. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_1005003 pr 2012-12-21T07:59:04Z cellular_component owl:Class GO:0106011 biolink:NamedThing regulation of protein localization to medial cortex Any process that regulates the localization of a protein to the medial cortex. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-27T17:29:56Z biological_process owl:Class GO:0036289 biolink:NamedThing peptidyl-serine autophosphorylation The phosphorylation by a protein of one or more of its own serine amino acid residues, or a serine residue on an identical protein. tmpzr1t_l9r_go_relaxed.owl serine autophosphorylation bf 2012-07-18T10:24:32Z biological_process owl:Class GO:0018105 biolink:NamedThing peptidyl-serine phosphorylation The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0037 biological_process owl:Class GO:0031166 biolink:NamedThing integral component of vacuolar membrane The component of the vacuolar membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. tmpzr1t_l9r_go_relaxed.owl integral to vacuolar membrane cellular_component owl:Class GO:0031310 biolink:NamedThing intrinsic component of vacuolar membrane The component of the vacuolar membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to vacuolar membrane cellular_component owl:Class GO:0048687 biolink:NamedThing positive regulation of sprouting of injured axon Any process that activates, maintains or increases the rate of sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl up regulation of sprouting of injured axon|stimulation of sprouting of injured axon|up-regulation of sprouting of injured axon|upregulation of sprouting of injured axon|activation of sprouting of injured axon biological_process owl:Class GO:2000544 biolink:NamedThing regulation of endothelial cell chemotaxis to fibroblast growth factor Any process that modulates the frequency, rate or extent of endothelial cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T07:14:04Z biological_process owl:Class GO:0001116 biolink:NamedThing protein-DNA-RNA complex assembly The aggregation, arrangement and bonding together of proteins, DNA, and RNA molecules to form a protein-DNA-RNA complex. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-03T04:01:38Z biological_process owl:Class GO:0009323 biolink:NamedThing ribosomal-protein-alanine N-acetyltransferase complex An enzyme complex that catalyzes the transfer of an acetyl group to ribosomal-protein alanine, forming ribosomal-protein acetylalanine. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.128 cellular_component owl:Class GO:0031248 biolink:NamedThing protein acetyltransferase complex A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0080168 biolink:NamedThing abscisic acid transport The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T05:08:56Z biological_process owl:Class GO:0002689 biolink:NamedThing negative regulation of leukocyte chemotaxis Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl negative regulation of immune cell chemotaxis|down regulation of leukocyte chemotaxis|downregulation of leukocyte chemotaxis|inhibition of leukocyte chemotaxis|negative regulation of leucocyte chemotaxis|down-regulation of leukocyte chemotaxis biological_process owl:Class GO:0046645 biolink:NamedThing positive regulation of gamma-delta T cell activation Any process that activates or increases the frequency, rate or extent of gamma-delta T cell activation. tmpzr1t_l9r_go_relaxed.owl up regulation of gamma-delta T cell activation|positive regulation of gamma-delta T-lymphocyte activation|up-regulation of gamma-delta T cell activation|activation of gamma-delta T cell activation|upregulation of gamma-delta T cell activation|positive regulation of gamma-delta T-cell activation|stimulation of gamma-delta T cell activation|positive regulation of gamma-delta T lymphocyte activation biological_process owl:Class GO:0048559 biolink:NamedThing establishment of floral organ orientation The process that determines the orientation of the floral organs with reference to the central axis of the flower. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032655 biolink:NamedThing regulation of interleukin-12 production Any process that modulates the frequency, rate, or extent of interleukin-12 production. tmpzr1t_l9r_go_relaxed.owl regulation of NKSF production|regulation of interleukin-12 secretion|regulation of interleukin-12 biosynthetic process|regulation of IL-12 production|regulation of CLMF production GO:0045075|GO:2001182 biological_process owl:Class GO:0061631 biolink:NamedThing ubiquitin conjugating enzyme activity Isoenergetic transfer of ubiquitin from one protein to another via the reaction X-ubiquitin + Y -> Y-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl HECT E3|E2 EC:2.3.2.23 dph 2014-05-18T09:25:19Z molecular_function owl:Class GO:0004842 biolink:NamedThing ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. tmpzr1t_l9r_go_relaxed.owl ubiquitin ligase activity|ubiquitin protein-ligase activity|E3|ubiquitin-conjugating enzyme activity|ubiquitin conjugating enzyme activity|ubiquitin protein ligase activity|E2|anaphase-promoting complex activity Reactome:R-HSA-1234172|Reactome:R-HSA-2187368|Reactome:R-HSA-5607728|Reactome:R-HSA-174159|Reactome:R-HSA-9013069|Reactome:R-HSA-1980074|Reactome:R-HSA-2900765|Reactome:R-HSA-183051|Reactome:R-HSA-1918095|Reactome:R-HSA-5607725|Reactome:R-HSA-5675470|Reactome:R-HSA-75824|Reactome:R-HSA-5357757|Reactome:R-HSA-174227|Reactome:R-HSA-400267|Reactome:R-HSA-183089|Reactome:R-HSA-168915|Reactome:R-HSA-201425|Reactome:R-HSA-174195|Reactome:R-HSA-1358789|Reactome:R-HSA-3788724|Reactome:R-HSA-870449|Reactome:R-HSA-1169405|Reactome:R-HSA-1169394|Reactome:R-HSA-1918092|Reactome:R-HSA-2213017|Reactome:R-HSA-5667111|Reactome:R-HSA-202453|Reactome:R-HSA-8956106|Reactome:R-HSA-8948709|Reactome:R-HSA-918224|Reactome:R-HSA-180597|Reactome:R-HSA-2169050|Reactome:R-HSA-2769007|Reactome:R-HSA-5607757|Reactome:R-HSA-3249386|Reactome:R-HSA-5660753|Reactome:R-HSA-3780995|Reactome:R-HSA-5684250|Reactome:R-HSA-1169398|Reactome:R-HSA-1169395|Reactome:R-HSA-209063|Reactome:R-HSA-983140|Reactome:R-HSA-9701000|Reactome:R-HSA-211734|Reactome:R-HSA-3134804|Reactome:R-HSA-2730904|Reactome:R-HSA-936986|Reactome:R-HSA-450358|Reactome:R-HSA-1358790|Reactome:R-HSA-1977296|Reactome:R-HSA-5655170|Reactome:R-HSA-5668454|Reactome:R-HSA-1253282|Reactome:R-HSA-5691108|Reactome:R-HSA-3134946|Reactome:R-HSA-182993|Reactome:R-HSA-180540|Reactome:R-HSA-182986|Reactome:R-HSA-5483238|Reactome:R-HSA-9688831|Reactome:R-HSA-187575|Reactome:R-HSA-446877|Reactome:R-HSA-983156|Reactome:R-HSA-1169402|Reactome:R-HSA-2172172|Reactome:R-HSA-2737728|Reactome:R-HSA-9628444|Reactome:R-HSA-5205682|Reactome:R-HSA-1912386|Reactome:R-HSA-173542|KEGG_REACTION:R03876|Reactome:R-HSA-2186747|Reactome:R-HSA-5610745|Reactome:R-HSA-4332236|Reactome:R-HSA-9014342|Reactome:R-HSA-1852623|Reactome:R-HSA-3781009|Reactome:R-HSA-5667107|Reactome:R-HSA-1234163|Reactome:R-HSA-5607756|Reactome:R-HSA-2179276|Reactome:R-HSA-179417|Reactome:R-HSA-2186785|Reactome:R-HSA-9013974|Reactome:R-HSA-202534|Reactome:R-HSA-174104|Reactome:R-HSA-936412|Reactome:R-HSA-264444|Reactome:R-HSA-69598|Reactome:R-HSA-975147|Reactome:R-HSA-983153|Reactome:R-HSA-3797226|Reactome:R-HSA-1363331|Reactome:R-HSA-5652009|Reactome:R-HSA-5693108|Reactome:R-HSA-741386|Reactome:R-HSA-174057|Reactome:R-HSA-3000335|Reactome:R-HSA-2682349|Reactome:R-HSA-5610746|Reactome:R-HSA-5362412|Reactome:R-HSA-174144|Reactome:R-HSA-9645414|Reactome:R-HSA-975118|Reactome:R-HSA-1980118|Reactome:R-HSA-9645394|Reactome:R-HSA-1912357|Reactome:R-HSA-5610742|Reactome:R-HSA-1358792|Reactome:R-HSA-1169397|Reactome:R-HSA-205118|Reactome:R-HSA-183084|Reactome:R-HSA-5668534|Reactome:R-HSA-451418|Reactome:R-HSA-1169406|Reactome:R-HSA-173545|Reactome:R-HSA-936942|Reactome:R-HSA-183036 GO:0004841|GO:0004840 molecular_function owl:Class GO:0009000 biolink:NamedThing selenocysteine lyase activity Catalysis of the reaction: L-selenocysteine + reduced acceptor = hydrogen selenide + L-alanine + acceptor. tmpzr1t_l9r_go_relaxed.owl selenocysteine beta-lyase activity|L-selenocysteine selenide-lyase (L-alanine-forming)|selenocysteine reductase activity MetaCyc:SELENOCYSTEINE-LYASE-RXN|Reactome:R-HSA-2408524|RHEA:11632|EC:4.4.1.16 molecular_function owl:Class GO:0019803 biolink:NamedThing peptidyl-aspartic acid carboxylation The carboxylation of peptidyl-aspartic acid to form peptidyl-L-beta-carboxyaspartic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0304 biological_process owl:Class GO:0018214 biolink:NamedThing protein carboxylation The addition of a carboxy group to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid carboxylation biological_process owl:Class GO:0032382 biolink:NamedThing positive regulation of intracellular sterol transport Any process that activates or increases the frequency, rate or extent of the directed movement of sterols within cells. tmpzr1t_l9r_go_relaxed.owl stimulation of intracellular sterol transport|upregulation of intracellular sterol transport|up-regulation of intracellular sterol transport|up regulation of intracellular sterol transport|activation of intracellular sterol transport biological_process owl:Class GO:0032380 biolink:NamedThing regulation of intracellular sterol transport Any process that modulates the frequency, rate or extent of the directed movement of sterols within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070964 biolink:NamedThing positive regulation of neutrophil mediated killing of gram-positive bacterium Any process that increases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl stimulation of neutrophil mediated killing of gram-positive bacterium|upregulation of neutrophil mediated killing of gram-positive bacterium|up-regulation of neutrophil mediated killing of gram-positive bacterium|activation of neutrophil mediated killing of gram-positive bacterium|up regulation of neutrophil mediated killing of gram-positive bacterium mah 2009-10-01T02:28:49Z biological_process owl:Class GO:0070962 biolink:NamedThing positive regulation of neutrophil mediated killing of bacterium Any process that increases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl upregulation of neutrophil mediated killing of bacterium|up-regulation of neutrophil mediated killing of bacterium|up regulation of neutrophil mediated killing of bacterium|stimulation of neutrophil mediated killing of bacterium|activation of neutrophil mediated killing of bacterium mah 2009-10-01T02:28:49Z biological_process owl:Class GO:1901814 biolink:NamedThing astaxanthin catabolic process The chemical reactions and pathways resulting in the breakdown of astaxanthin. tmpzr1t_l9r_go_relaxed.owl astaxanthin degradation|astaxanthin catabolism|astaxanthin breakdown yaf 2013-01-22T10:37:03Z biological_process owl:Class GO:0016124 biolink:NamedThing xanthophyll catabolic process The chemical reactions and pathways resulting in the breakdown of xanthophylls, oxygen-containing carotenoids. tmpzr1t_l9r_go_relaxed.owl xanthophyll degradation|xanthophyll catabolism|xanthophyll breakdown biological_process owl:Class GO:0047537 biolink:NamedThing 2-aminohexanoate transaminase activity Catalysis of the reaction: L-2-aminohexanoate + 2-oxoglutarate = 2-oxohexanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl norleucine transaminase activity|norleucine aminotransferase activity|leucine L-norleucine: 2-oxoglutarate aminotransferase activity|L-2-aminohexanoate:2-oxoglutarate aminotransferase activity|norleucine (leucine) aminotransferase activity|2-aminohexanoate aminotransferase activity RHEA:23600|EC:2.6.1.67|MetaCyc:2-AMINOHEXANOATE-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0044596 biolink:NamedThing 3-demethylubiquinol-10 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-10 = S-adenosyl-L-homocysteine + ubiquinol-10. tmpzr1t_l9r_go_relaxed.owl RHEA:44412|MetaCyc:RXN-9237|Reactome:R-HSA-2162186 jl 2012-04-26T04:54:11Z molecular_function owl:Class GO:0061542 biolink:NamedThing 3-demethylubiquinol-n 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-n = S-adenosyl-L-homocysteine + ubiquinol-n. tmpzr1t_l9r_go_relaxed.owl 5-demethylubiquinone-10 methyltransferase|OMHMB-methyltransferase|2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone methyltransferase|5-demethylubiquinone-9 methyltransferase|S-adenosyl-L-methionine:2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone-O-methyltransferase dph 2013-06-25T08:01:46Z molecular_function owl:Class GO:1900915 biolink:NamedThing negative regulation of octadecene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of octadecene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of octadecene formation|down-regulation of octadecene biosynthesis|downregulation of 1-octadecene biosynthetic process|down regulation of octadecene biosynthesis|negative regulation of 1-octadecene biosynthetic process|inhibition of octadecene biosynthetic process|negative regulation of octadecene biosynthesis|down-regulation of octadecene biosynthetic process|negative regulation of octadecene formation|downregulation of octadecene biosynthetic process|inhibition of octadecene formation|down regulation of octadecene synthesis|down regulation of octadecene biosynthetic process|down-regulation of octadecene anabolism|inhibition of octadecene anabolism|down regulation of octadecene formation|downregulation of octadecene synthesis|negative regulation of octadecene synthesis|downregulation of octadecene anabolism|down-regulation of octadecene formation|down regulation of octadecene anabolism|inhibition of octadecene biosynthesis|inhibition of octadecene synthesis|down-regulation of octadecene synthesis|downregulation of octadecene biosynthesis|down-regulation of 1-octadecene biosynthetic process|down regulation of 1-octadecene biosynthetic process|negative regulation of octadecene anabolism|inhibition of 1-octadecene biosynthetic process tt 2012-06-13T04:24:47Z biological_process owl:Class GO:1902384 biolink:NamedThing glycyrrhetinate metabolic process The chemical reactions and pathways involving glycyrrhetinate. tmpzr1t_l9r_go_relaxed.owl glycyrrhetinate metabolism ms 2013-09-03T12:55:55Z biological_process owl:Class GO:1902522 biolink:NamedThing response to 4'-epidoxorubicin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4'-epidoxorubicin stimulus. tmpzr1t_l9r_go_relaxed.owl response to epirubicin Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2013-12-02T09:44:31Z biological_process owl:Class GO:0140412 biolink:NamedThing zinc:bicarbonate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: zinc(out) + HCO3-(out) = zinc(in) + HCO3-(in). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18345 pg 2020-01-07T18:43:02Z molecular_function owl:Class GO:0004354 biolink:NamedThing glutamate dehydrogenase (NADP+) activity Catalysis of the reaction: L-glutamate + H2O + NADP+ = 2-oxoglutarate + NH3 + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl L-glutamic acid dehydrogenase activity|dehydrogenase, glutamate (nicotinamide adenine dinucleotide (phosphate))|NAD(P)H-dependent glutamate dehydrogenase activity|L-glutamate dehydrogenase|glutamic acid dehydrogenase|NAD(P)-glutamate dehydrogenase activity|glutamic dehydrogenase activity|L-glutamate:NADP+ oxidoreductase (deaminating) EC:1.4.1.4|RHEA:11612|MetaCyc:GLUTDEHYD-RXN|MetaCyc:GLUTSYNIII-PWY molecular_function owl:Class GO:0004353 biolink:NamedThing glutamate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+)|glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+)|glutamic dehydrogenase activity|L-glutamate:NAD(P)+ oxidoreductase (deaminating) Reactome:R-HSA-70589|Reactome:R-HSA-70600|EC:1.4.1.3|MetaCyc:GLUTAMATE-DEHYDROGENASE-NADP+-RXN|MetaCyc:GLUTAMATE-SYN2-PWY Note that this term has a MetaCyc pathway reference as the pathway only has a single step. molecular_function owl:Class GO:0017151 biolink:NamedThing DEAD/H-box RNA helicase binding Binding to a DEAD/H-box RNA helicase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901058 biolink:NamedThing p-hydroxyphenyl lignin metabolic process The chemical reactions and pathways involving p-hydroxyphenyl lignin. tmpzr1t_l9r_go_relaxed.owl H-lignin metabolic process|p-hydroxyphenyl lignin metabolism tt 2012-06-29T12:31:57Z biological_process owl:Class GO:0009808 biolink:NamedThing lignin metabolic process The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units. tmpzr1t_l9r_go_relaxed.owl lignin metabolism biological_process owl:Class GO:0001821 biolink:NamedThing histamine secretion The regulated release of histamine by a cell or tissue. It is formed by decarboxylation of histidine and it acts through receptors in smooth muscle and in secretory systems. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046903 biolink:NamedThing secretion The controlled release of a substance by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015226 biolink:NamedThing carnitine transmembrane transporter activity Enables the transfer of carnitine across a membrane. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl vitamin Bt transporter activity Reactome:R-HSA-164967|Reactome:R-HSA-5625674|Reactome:R-HSA-549297|Reactome:R-HSA-165026 molecular_function owl:Class GO:2001192 biolink:NamedThing negative regulation of gamma-delta T cell activation involved in immune response Any process that stops, prevents or reduces the frequency, rate or extent of gamma-delta T cell activation involved in immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of gamma-delta T-lymphocyte activation during immune response|negative regulation of gamma-delta T-cell activation during immune response|negative regulation of gamma-delta T cell activation during immune response|negative regulation of gamma-delta T lymphocyte activation during immune response yaf 2011-11-03T04:28:44Z biological_process owl:Class GO:0046644 biolink:NamedThing negative regulation of gamma-delta T cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of gamma-delta T cell activation. tmpzr1t_l9r_go_relaxed.owl down regulation of gamma-delta T cell activation|negative regulation of gamma-delta T-cell activation|downregulation of gamma-delta T cell activation|negative regulation of gamma-delta T lymphocyte activation|inhibition of gamma-delta T cell activation|negative regulation of gamma-delta T-lymphocyte activation|down-regulation of gamma-delta T cell activation biological_process owl:Class GO:0031823 biolink:NamedThing type 1D serotonin receptor binding Binding to a type 1D serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 1D receptor binding|type 1D serotonin receptor ligand molecular_function owl:Class GO:0031821 biolink:NamedThing G protein-coupled serotonin receptor binding Binding to a metabotropic serotonin receptor. tmpzr1t_l9r_go_relaxed.owl metabotropic 5-hydroxytryptamine receptor binding|G-protein coupled serotonin receptor binding|metabotropic serotonin receptor binding|metabotropic serotonin receptor ligand molecular_function owl:Class GO:0046610 biolink:NamedThing lysosomal proton-transporting V-type ATPase, V0 domain The V0 domain of a proton-transporting V-type ATPase found in the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl lysosomal hydrogen ion-transporting ATPase V0 domain cellular_component owl:Class GO:0000220 biolink:NamedThing vacuolar proton-transporting V-type ATPase, V0 domain The V0 domain of a proton-transporting V-type ATPase found in the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar hydrogen ion-transporting ATPase V0 domain Note that this domain often consists of five subunits, although in some mammalian tissues it may have an additional subunit. cellular_component owl:Class GO:0035360 biolink:NamedThing positive regulation of peroxisome proliferator activated receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the peroxisome proliferator activated receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of PPAR signaling pathway|positive regulation of peroxisome proliferator-activated receptor signaling pathway|positive regulation of peroxisome proliferator activated receptor signalling pathway bf 2010-03-05T10:43:10Z biological_process owl:Class GO:0019828 biolink:NamedThing aspartic-type endopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of aspartic-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; the optimum reaction pH is below 5 due to an aspartic residue involved in the catalytic process. tmpzr1t_l9r_go_relaxed.owl aspartic protease inhibitor activity molecular_function owl:Class GO:0010799 biolink:NamedThing regulation of peptidyl-threonine phosphorylation Any process that modulates the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075252 biolink:NamedThing regulation of uredospore formation Any process that modulates the frequency, rate or extent of uredospore formation, a process in which an asexual, dikaryotic, often rusty-colored spore, is formed in a structure called a uredinium. tmpzr1t_l9r_go_relaxed.owl regulation of ureidospore formation biological_process owl:Class GO:1901434 biolink:NamedThing regulation of toluene catabolic process Any process that modulates the frequency, rate or extent of toluene catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of toluene breakdown|regulation of toluene catabolism|regulation of toluene degradation tt 2012-10-01T21:12:31Z biological_process owl:Class GO:0033660 biolink:NamedThing suppression by symbiont of host resistance gene-dependent defense response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the resistance gene-dependent defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by symbiont of host resistance gene-dependent defense response|negative regulation by symbiont of host resistance gene-dependent defense response|down-regulation by symbiont of host gene-for-gene resistance|downregulation by symbiont of pathogen-race/host plant cultivar-specific resistance in symbiont|down regulation by symbiont of defense response in host by specific elicitors biological_process owl:Class GO:0044414 biolink:NamedThing suppression of host defenses by symbiont Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of host defense(s) by active mechanisms that normally result in the shutting down of a host pathway. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation by organism of defense response of other organism during symbiotic interaction|down regulation by symbiont of host defense response|down-regulation by symbiont of host defense response|inhibition by symbiont of host defense response|suppression of defense response of other organism involved in symbiotic interaction|inhibition by organism of defense response of other organism during symbiotic interaction|suppression of defenses of other organism involved in symbiotic interaction|negative regulation by organism of defense response of other organism involved in symbiotic interaction|downregulation by symbiont of host defense response|suppression of defense response of other organism|negative regulation by symbiont of host defense response|negative regulation of host defenses|negative regulation by organism of defense response of other organism during symbiotic interaction|suppression of host defense response|down-regulation by organism of defense response of other organism during symbiotic interaction|down regulation by organism of defense response of other organism during symbiotic interaction GO:0052037|GO:0051833|GO:0052261 biological_process owl:Class GO:1905070 biolink:NamedThing anterior visceral endoderm cell migration The orderly movement of an anterior visceral endoderm cell from one site to another. tmpzr1t_l9r_go_relaxed.owl cls 2016-03-21T15:18:32Z biological_process owl:Class GO:0072740 biolink:NamedThing cellular response to anisomycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0072739 biolink:NamedThing response to anisomycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-07-17T10:33:00Z biological_process owl:Class GO:1903344 biolink:NamedThing regulation of protein polyglycylation Any process that modulates the frequency, rate or extent of protein polyglycylation. tmpzr1t_l9r_go_relaxed.owl sart 2014-08-19T09:32:08Z biological_process owl:Class GO:0051615 biolink:NamedThing histamine uptake The directed movement of histamine into a cell, typically presynaptic neurons or glial cells. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl histamine import biological_process owl:Class GO:0051608 biolink:NamedThing histamine transport The directed movement of histamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905080 biolink:NamedThing negative regulation of cerebellar neuron development Any process that stops, prevents or reduces the frequency, rate or extent of cerebellar neuron development. tmpzr1t_l9r_go_relaxed.owl downregulation of cerebellar neuron development|inhibition of cerebellar neuron development|down regulation of cerebellar neuron development|down-regulation of cerebellar neuron development hjd 2016-03-24T19:45:26Z biological_process owl:Class GO:0045665 biolink:NamedThing negative regulation of neuron differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of neuron differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of neuron differentiation|inhibition of neuron differentiation|downregulation of neuron differentiation|down regulation of neuron differentiation biological_process owl:Class GO:0034381 biolink:NamedThing plasma lipoprotein particle clearance The process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl lipoprotein particle clearance biological_process owl:Class GO:0035731 biolink:NamedThing dinitrosyl-iron complex binding Binding to a dinitrosyl-iron complex. Nitric oxide (NO) is stored as dinitrosyl-iron complexes, which form spontaneously from Glutathione (GSH), S-nitrosoglutathione, and trace amounts of ferrous ions, or by reaction of iron-sulfur centers with NO. tmpzr1t_l9r_go_relaxed.owl DNDGIC binding|dinitrosyl-diglutathionyl-iron complex binding|DNIC binding bf 2011-03-11T09:58:31Z molecular_function owl:Class GO:0034811 biolink:NamedThing benzo(a)pyrene 9,10-dioxygenase activity Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-cis-9,10-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1132|EC:1.13.11.- molecular_function owl:Class GO:0010678 biolink:NamedThing negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated Any cellular process that decreases the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates carried out by repression of transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular carbohydrate metabolic process by repression of transcription|negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-dependent|negative regulation of cellular carbohydrate metabolic process by transcriptional repression biological_process owl:Class GO:0010677 biolink:NamedThing negative regulation of cellular carbohydrate metabolic process Any process that decreases the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903317 biolink:NamedThing regulation of protein maturation Any process that modulates the frequency, rate or extent of protein maturation. tmpzr1t_l9r_go_relaxed.owl vw 2014-08-18T12:59:07Z biological_process owl:Class GO:0086018 biolink:NamedThing SA node cell to atrial cardiac muscle cell signaling Any process that mediates the transfer of information from an SA node cardiomyocyte to an atrial cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl sinoatrial node cardiomyocyte to atrial cardiomyocyte signalling|sinus node cardiomyocyte to atrial cardiomyocyte signalling|SAN cardiomyocyte to atrial cardiomyocyte signalling|SA node cardiac muscle cell to atrial cardiac muscle cell signalling|SA node cardiomyocyte to atrial cardiomyocyte signalling tb 2011-11-10T09:15:01Z biological_process owl:Class GO:0086019 biolink:NamedThing cell-cell signaling involved in cardiac conduction Any process that mediates the transfer of information from one cell to another and contributes to the heart process that regulates cardiac muscle contraction; beginning with the generation of an action potential in the sinoatrial node and ending with regulation of contraction of the myocardium. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in cardiac conduction dph 2011-11-16T03:43:52Z biological_process owl:Class GO:0005302 biolink:NamedThing L-tyrosine transmembrane transporter activity Enables the transfer of L-tyrosine from one side of a membrane to the other. L-tyrosine is 2-amino-3-(4-hydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl valine/tyrosine/tryptophan permease activity|L-tyrosine transporter activity|L-tyrosine permease activity GO:0015508 molecular_function owl:Class GO:0032307 biolink:NamedThing negative regulation of prostaglandin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a prostaglandin from a cell. tmpzr1t_l9r_go_relaxed.owl down regulation of prostaglandin secretion|down-regulation of prostaglandin secretion|inhibition of prostaglandin secretion|downregulation of prostaglandin secretion|negative regulation of prostacyclin secretion biological_process owl:Class GO:0032304 biolink:NamedThing negative regulation of icosanoid secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of an icosanoid from a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of icosanoid secretion|down-regulation of icosanoid secretion|negative regulation of eicosanoid secretion|down regulation of icosanoid secretion|downregulation of icosanoid secretion biological_process owl:Class GO:0010980 biolink:NamedThing positive regulation of vitamin D 24-hydroxylase activity Any process that increases the rate, frequency or extent of vitamin D 24-hydroxylase activity. Vitamin D 24-hydroxylase activity catalyzes the hydroxylation of C-24 of any form of vitamin D. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T11:47:19Z biological_process owl:Class GO:0010979 biolink:NamedThing regulation of vitamin D 24-hydroxylase activity Any process that modulates the rate, frequency or extent of vitamin D 24-hydroxylase activity. Vitamin D 24-hydroxylase activity catalyzes the hydroxylation of C-24 of any form of vitamin D. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T11:44:54Z biological_process owl:Class GO:0090405 biolink:NamedThing unicellular trichome branch A cell projection part that is a branch of a unicellular trichome. tmpzr1t_l9r_go_relaxed.owl Unicellular trichome (PO:0025537) is a trichome(PO:0000282) that is a single plant cell (PO:0009002). For a cell that forms a branch of a multicellular trichome, see multicellular trichome branch cell (PO:0025163). tb 2011-01-10T10:30:39Z cellular_component owl:Class GO:0035166 biolink:NamedThing post-embryonic hemopoiesis The stages of blood cell formation that take place after completion of embryonic development. tmpzr1t_l9r_go_relaxed.owl post-embryonic haemopoiesis biological_process owl:Class GO:0019466 biolink:NamedThing ornithine catabolic process via proline The chemical reactions and pathways resulting in the breakdown of ornithine, via the intermediate proline. tmpzr1t_l9r_go_relaxed.owl ornithine breakdown via proline|ornithine degradation via proline MetaCyc:ORN-AMINOPENTANOATE-CAT-PWY biological_process owl:Class GO:0006593 biolink:NamedThing ornithine catabolic process The chemical reactions and pathways resulting in the breakdown of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. tmpzr1t_l9r_go_relaxed.owl ornithine catabolism|ornithine degradation|ornithine breakdown biological_process owl:Class GO:1902238 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl pr 2013-06-19T14:00:34Z biological_process owl:Class GO:1902218 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway in response to osmotic stress Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl rl 2013-06-13T10:19:07Z biological_process owl:Class GO:0006141 biolink:NamedThing regulation of purine nucleobase metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving purines. tmpzr1t_l9r_go_relaxed.owl regulation of purine base metabolic process|regulation of purine base metabolism biological_process owl:Class GO:1904030 biolink:NamedThing negative regulation of cyclin-dependent protein kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of cyclin-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of cyclin-dependent protein kinase activity|downregulation of cyclin-dependent protein kinase activity|down-regulation of cyclin-dependent protein kinase activity|inhibition of cyclin-dependent protein kinase activity als 2015-03-13T15:43:44Z biological_process owl:Class GO:0018420 biolink:NamedThing peptide cross-linking via N6-(L-isoaspartyl)-L-lysine The formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues. tmpzr1t_l9r_go_relaxed.owl RESID:AA0294 biological_process owl:Class GO:0018196 biolink:NamedThing peptidyl-asparagine modification The modification of peptidyl-asparagine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004719 biolink:NamedThing protein-L-isoaspartate (D-aspartate) O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester. tmpzr1t_l9r_go_relaxed.owl L-isoaspartyl/D-aspartyl protein carboxyl methyltransferase activity|protein O-methyltransferase (L-isoaspartate)|protein (D-aspartate) methyltransferase activity|D-aspartyl/L-isoaspartyl methyltransferase activity|protein beta-aspartate O-methyltransferase activity|L-aspartyl/L-isoaspartyl protein methyltransferase activity|S-adenosyl-L-methionine:protein-L-isoaspartate O-methyltransferase activity|protein L-isoaspartyl methyltransferase activity|protein D-aspartate methyltransferase activity|protein L-isoaspartate methyltransferase activity|protein-L-isoaspartate(D-aspartate) O-methyltransferase activity|L-isoaspartyl protein carboxyl methyltransferase activity|protein-L-isoaspartate O-methyltransferase activity|protein-beta-aspartate O-methyltransferase activity MetaCyc:2.1.1.77-RXN|RHEA:12705|EC:2.1.1.77|Reactome:R-HSA-5676966 molecular_function owl:Class GO:0089708 biolink:NamedThing L-histidine transmembrane export from vacuole The directed movement of L-histidine out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036104 biolink:NamedThing Kdo2-lipid A biosynthetic process The chemical reactions and pathways resulting in the formation of Kdo2-lipid A, a lipopolysaccharide (LPS) component. tmpzr1t_l9r_go_relaxed.owl Kdo2-lipid A anabolism|Kdo2-lipid A synthesis|di[3-deoxy-D-manno-octulosonyl]-lipid A biosynthesis|Kdo2-lipid A biosynthesis|Kdo2-lipid A formation|KDO(2)-lipid A biosynthesis bf 2012-01-27T01:49:23Z biological_process owl:Class GO:0009247 biolink:NamedThing glycolipid biosynthetic process The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). tmpzr1t_l9r_go_relaxed.owl glycolipid anabolism|glycolipid biosynthesis|glycolipid synthesis|glycolipid formation MetaCyc:PWY-401 biological_process owl:Class GO:0002527 biolink:NamedThing vasodilation involved in acute inflammatory response An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure contributing to an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl vasodilation during acute inflammatory response biological_process owl:Class GO:0009923 biolink:NamedThing fatty acid elongase complex A tetrameric complex of four different subunits which catalyzes the elongation of fatty acids chains 2 carbon units at a time in the synthesis of very long chain fatty acids. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060585 biolink:NamedThing positive regulation of prostaglandin-endoperoxide synthase activity Any process that increases the rate, frequency or extent of prostaglandin-endoperoxide synthase activity. Prostaglandin-endoperoxide synthase activity is the catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl positive regulation of (PG)H synthase activity|positive regulation of PG synthetase activity|positive regulation of prostaglandin synthetase activity|positive regulation of fatty acid cyclooxygenase activity dph 2009-05-08T02:12:34Z biological_process owl:Class GO:2000617 biolink:NamedThing positive regulation of histone H3-K9 acetylation Any process that activates or increases the frequency, rate or extent of histone H3-K9 acetylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of histone H3 acetylation at K9|positive regulation of histone H3K9 acetylation vk 2011-04-18T03:16:07Z biological_process owl:Class GO:0004806 biolink:NamedThing triglyceride lipase activity Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate. tmpzr1t_l9r_go_relaxed.owl steapsin|takedo 1969-4-9|tweenase activity|triolein hydrolase activity|triacylglycerol lipase activity|GA 56|triglyceridase activity|tweenesterase activity|amano P|tributyrinase activity|liver lipase|TAG activity|triglyceride hydrolase activity|PPL|meito MY 30|tween-hydrolyzing esterase activity|butyrinase activity|triacetinase activity|salt-resistant post-heparin lipase|hepatic monoacylglycerol acyltransferase|tween hydrolase activity|lipazin|triacylglycerol acylhydrolase activity|amno N-AP|glycerol ester hydrolase activity|triacylglycerol ester hydrolase activity|post-heparin plasma protamine-resistant lipase|glycerol-ester hydrolase activity|heparin releasable hepatic lipase|amano CE|amano AP|meito sangyo OF lipase|hepatic lipase|amano CES|amano B|GEH|capalase L|tributyrin esterase activity|tributyrase activity|cacordase activity Reactome:R-HSA-1482777|Reactome:R-HSA-163551|EC:3.1.1.3|MetaCyc:TRIACYLGLYCEROL-LIPASE-RXN|Reactome:R-HSA-8848338|RHEA:12044|Reactome:R-HSA-5694109|Reactome:R-HSA-8848339 molecular_function owl:Class GO:0016298 biolink:NamedThing lipase activity Catalysis of the hydrolysis of a lipid or phospholipid. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.-|Reactome:R-HSA-163432|Reactome:R-HSA-163402 molecular_function owl:Class GO:0034163 biolink:NamedThing regulation of toll-like receptor 9 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 9 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR9 signaling pathway|regulation of toll-like receptor 9 signalling pathway biological_process owl:Class GO:0050684 biolink:NamedThing regulation of mRNA processing Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900407 biolink:NamedThing regulation of cellular response to oxidative stress Any process that modulates the frequency, rate or extent of cellular response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl regulation of adaptive response to oxidative stress mah 2012-04-20T03:30:52Z biological_process owl:Class GO:1904029 biolink:NamedThing regulation of cyclin-dependent protein kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl als 2015-03-13T15:43:38Z biological_process owl:Class GO:1900869 biolink:NamedThing tatiopterin metabolic process The chemical reactions and pathways involving tatiopterin. tmpzr1t_l9r_go_relaxed.owl tatiopterin metabolism tt 2012-06-12T04:43:57Z biological_process owl:Class GO:0005212 biolink:NamedThing structural constituent of eye lens The action of a molecule that contributes to the structural integrity of the lens of an eye. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140507 biolink:NamedThing granzyme-mediated programmed cell death signaling pathway A series of molecular signals induced by granzymes which triggers the cell death of a cell. The pathway starts with reception of a granzyme signal, and ends when the execution phase of cell death is triggered. Granzymes are serine proteases that are secreted by cytotoxic T cells and natural killer cells to induce cell death in target cells. tmpzr1t_l9r_go_relaxed.owl granzyme-mediated cell death signaling pathway https://github.com/geneontology/go-ontology/issues/19901|http://wiki.geneontology.org/index.php/Apoptosis_Curation_Manual#Other_children_of_apoptotic_signaling_pathway pg 2020-08-27T13:51:40Z biological_process owl:Class GO:2000053 biolink:NamedThing regulation of Wnt signaling pathway involved in dorsal/ventral axis specification Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification|regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification jl 2010-08-20T01:13:28Z biological_process owl:Class GO:0047691 biolink:NamedThing aspulvinone dimethylallyltransferase activity Catalysis of the reaction: aspulvinone E + 2 dimethylallyl diphosphate = aspulvinone H + 2 diphosphate. tmpzr1t_l9r_go_relaxed.owl dimethylallyl-diphosphate:aspulvinone-E dimethylallyltransferase activity|dimethylallyl pyrophosphate:aspulvinone dimethylallyltransferase activity RHEA:13809|KEGG_REACTION:R03799|EC:2.5.1.35|MetaCyc:ASPULVINONE-DIMETHYLALLYLTRANSFERASE-RXN molecular_function owl:Class GO:0015362 biolink:NamedThing high-affinity sodium:dicarboxylate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity sodium:dicarboxylate cotransporter activity|high affinity sodium:dicarboxylate symporter activity Reactome:R-HSA-433101 molecular_function owl:Class GO:0017153 biolink:NamedThing sodium:dicarboxylate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium:dicarboxylate cotransporter activity molecular_function owl:Class GO:0005280 biolink:NamedThing amino acid:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + H+(out) = amino acid(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl cation/amino acid symporter|hydrogen:amino acid symporter activity Reactome:R-HSA-8875623 molecular_function owl:Class GO:0015295 biolink:NamedThing solute:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(out) = solute(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl L-idonate/D-gluconate:hydrogen symporter activity|solute:hydrogen symporter activity|low affinity metal ion uptake transporter activity|high affinity metal ion uptake transporter activity|proline/glycine/betaine:hydrogen/sodium symporter activity|heavy metal ion:hydrogen symporter activity molecular_function owl:Class GO:0062110 biolink:NamedThing negative regulation of DNA recombinase disassembly Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombinase complex disassembly, the disaggregation of a DNA recombinase complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl dph 2019-02-05T13:57:35Z biological_process owl:Class GO:0004758 biolink:NamedThing serine C-palmitoyltransferase activity Catalysis of the reaction: L-serine + H(+) + palmitoyl-CoA = 3-dehydrosphinganine + CO(2) + CoA. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating) activity|serine palmitoyltransferase|SPT|3-oxosphinganine synthetase activity|acyl-CoA:serine C-2 acyltransferase decarboxylating MetaCyc:SERINE-C-PALMITOYLTRANSFERASE-RXN|EC:2.3.1.50|KEGG_REACTION:R01281|Reactome:R-HSA-428127|RHEA:14761 molecular_function owl:Class GO:0016454 biolink:NamedThing C-palmitoyltransferase activity Catalysis of the transfer of a palmitoyl group to a carbon atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031445 biolink:NamedThing regulation of heterochromatin assembly Any process that modulates the frequency, rate, extent or location of heterochromatin formation. tmpzr1t_l9r_go_relaxed.owl regulation of heterochromatin formation biological_process owl:Class GO:0052770 biolink:NamedThing coenzyme F390-A hydrolase activity Catalysis of the reaction: coenzyme F390-A = AMP + coenzyme F420. tmpzr1t_l9r_go_relaxed.owl 8-hydroxyadenylylated-coenzyme F420 hydrolase activity ai 2011-10-03T12:00:00Z molecular_function owl:Class GO:0016787 biolink:NamedThing hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1236938|EC:3.-.-.-|Reactome:R-HSA-2029475|Reactome:R-HSA-8952137|Reactome:R-HSA-5695964|Reactome:R-HSA-8938314|Reactome:R-HSA-6788295|Reactome:R-HSA-6786190|Reactome:R-HSA-5694583 molecular_function owl:Class GO:0033770 biolink:NamedThing 2-hydroxyisoflavanone synthase activity Catalysis of the reaction: apigenin + 2 NADPH + 2 H+ + O2 = 2-hydroxy-2,3-dihydrogenistein + 2 NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl 2-HIS|apigenin,NADPH:oxygen oxidoreductase (isoflavanone-forming) activity EC:1.14.13.86|MetaCyc:RXN-7750|RHEA:14897 molecular_function owl:Class GO:0034092 biolink:NamedThing negative regulation of maintenance of sister chromatid cohesion Any process that decreases the extent to which the association between sister chromatids of a replicated chromosome is maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045875 biolink:NamedThing negative regulation of sister chromatid cohesion Any process that stops, prevents, or reduces the frequency, rate or extent of sister chromatid cohesion. tmpzr1t_l9r_go_relaxed.owl downregulation of sister chromatid cohesion|down regulation of sister chromatid cohesion|down-regulation of sister chromatid cohesion|inhibition of sister chromatid cohesion biological_process owl:Class GO:1903549 biolink:NamedThing positive regulation of growth hormone activity Any process that activates or increases the frequency, rate or extent of growth hormone activity. tmpzr1t_l9r_go_relaxed.owl activation of GH activity|up-regulation of GH activity|activation of pituitary growth hormone activity|positive regulation of placental growth hormone activity|upregulation of growth hormone activity|up-regulation of growth hormone activity|activation of placental growth hormone activity|upregulation of pituitary growth hormone activity|up regulation of pituitary growth hormone activity|up regulation of placental growth hormone activity|up regulation of growth hormone activity|upregulation of GH activity|positive regulation of pituitary growth hormone activity|up-regulation of pituitary growth hormone activity|up regulation of GH activity|positive regulation of GH activity|up-regulation of placental growth hormone activity|activation of growth hormone activity|upregulation of placental growth hormone activity mr 2014-10-20T15:18:53Z biological_process owl:Class GO:1903547 biolink:NamedThing regulation of growth hormone activity Any process that modulates the frequency, rate or extent of growth hormone activity. tmpzr1t_l9r_go_relaxed.owl regulation of placental growth hormone activity|regulation of GH activity|regulation of pituitary growth hormone activity mr 2014-10-20T15:18:36Z biological_process owl:Class GO:0075512 biolink:NamedThing clathrin-dependent endocytosis of virus by host cell Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via clathrin-mediated endocytosis|clathrin-mediated endocytosis of virus by host cell|viral entry into host cell via clathrin-mediated endocytosis followed by endosome lysis|viral penetration via clathrin-mediated endocytosis VZ:957 jl 2011-07-27T02:08:54Z GO:0075516 biological_process owl:Class GO:0019065 biolink:NamedThing receptor-mediated endocytosis of virus by host cell Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via receptor-mediated endocytosis|virus receptor-mediated endocytosis by host|receptor-mediated endocytosis of virus by host|receptor mediated endocytosis by host of virus particle|viral receptor mediated endocytosis|receptor mediated endocytosis of virus particle by host|receptor mediated endocytosis of virus by host biological_process owl:Class GO:0099163 biolink:NamedThing synaptic signaling by nitric oxide Cell-cell signaling to or from a synapse, mediated by nitric oxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099536 biolink:NamedThing synaptic signaling Cell-cell signaling to, from or within a synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060064 biolink:NamedThing Spemann organizer formation at the anterior end of the primitive streak Formation of the specialized region at the anterior end of the primitive streak of the embryo that acts as the main signaling center establishing the body plan. tmpzr1t_l9r_go_relaxed.owl Spemann organizer formation in amniotes|Spemann-Mangold organizer formation at the anterior end of the primitive streak|Spemann's organizer formation at the anterior end of the primitive streak Occurs in reptiles, birds and mammals. biological_process owl:Class GO:0140317 biolink:NamedThing export across cell outer membrane The directed movement of a substance across the outer membrane in cells with two membranes. tmpzr1t_l9r_go_relaxed.owl pg 2019-04-01T08:12:23Z biological_process owl:Class GO:0006955 biolink:NamedThing immune response Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900317 biolink:NamedThing positive regulation of maltopentaose transport Any process that activates or increases the frequency, rate or extent of maltopentaose transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of maltopentaose transport|upregulation of maltopentaose transport|up regulation of maltopentaose transport|activation of maltopentaose transport tt 2012-04-05T08:00:04Z biological_process owl:Class GO:1900315 biolink:NamedThing regulation of maltopentaose transport Any process that modulates the frequency, rate or extent of maltopentaose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:59:47Z biological_process owl:Class GO:0072277 biolink:NamedThing metanephric glomerular capillary formation The process that gives rise to a metanephric glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T02:47:56Z biological_process owl:Class GO:0072104 biolink:NamedThing glomerular capillary formation The process that gives rise to a glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T02:40:40Z biological_process owl:Class GO:0018771 biolink:NamedThing 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase activity Catalysis of the reaction: (2E,4Z)-2-hydroxy-6-oxonona-2,4-dienedioate + H2O = (2E)-2-hydroxypenta-2,4-dienoate + H+ + succinate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase activity|(2E,4Z)-2-hydroxy-6-oxona-2,4-dienedioate succinylhydrolase activity RHEA:24789|EC:3.7.1.14|MetaCyc:MHPCHYDROL-RXN|UM-BBD_reactionID:r0438 GO:0008680 molecular_function owl:Class GO:0033295 biolink:NamedThing hydroxyectoine binding Binding to hydroxyectoine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050997 biolink:NamedThing quaternary ammonium group binding Binding to a quaternary ammonium group, including glycine betaine, choline, carnitine and proline. A quaternary ammonium group is any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups. tmpzr1t_l9r_go_relaxed.owl quaternary amine binding molecular_function owl:Class GO:0045070 biolink:NamedThing positive regulation of viral genome replication Any process that activates or increases the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl activation of viral genome replication|upregulation of viral genome replication|stimulation of viral genome replication|up regulation of viral genome replication|up-regulation of viral genome replication biological_process owl:Class GO:0048524 biolink:NamedThing positive regulation of viral process Any process that activates or increases the frequency, rate or extent of a multi-organism process in which a virus is a participant. tmpzr1t_l9r_go_relaxed.owl positive regulation of viral reproduction|upregulation of viral life cycle|stimulation of viral life cycle|activation of viral life cycle|up regulation of viral life cycle|up-regulation of viral life cycle|positive regulation of viral life cycle biological_process owl:Class GO:0060007 biolink:NamedThing linear vestibuloocular reflex A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060005 biolink:NamedThing vestibular reflex A reflex process in which a response to an angular or linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the inner ear and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075298 biolink:NamedThing regulation of zygospore formation Any process that modulates the frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072572 biolink:NamedThing poly-ADP-D-ribose binding Binding to polymeric ADP-D-ribose, a polymer that is composed of poly-ADP-D-ribose units linked through 1,2-glycosidic bonds at the ribose ring. tmpzr1t_l9r_go_relaxed.owl poly-ADP-ribose binding|pADPr binding mah 2011-01-31T02:49:04Z molecular_function owl:Class GO:0002599 biolink:NamedThing negative regulation of antigen processing and presentation of lipid antigen via MHC class Ib Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl negative regulation of lipid antigen processing and presentation via MHC class Ib|down regulation of antigen processing and presentation of lipid antigen via MHC class Ib|down-regulation of antigen processing and presentation of lipid antigen via MHC class Ib|downregulation of antigen processing and presentation of lipid antigen via MHC class Ib|inhibition of antigen processing and presentation of lipid antigen via MHC class Ib biological_process owl:Class GO:0033470 biolink:NamedThing gibberellin 12 biosynthetic process The chemical reactions and pathways resulting in the formation of gibberellin 12, (1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylic acid 1meta,4a-dimethyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylic acid. tmpzr1t_l9r_go_relaxed.owl gibberellin A12 biosynthetic process|gibberellin 12 biosynthesis|GA12 biosynthetic process|gibberellin 12 synthesis|gibberellin 12 anabolism|gibberellin 12 formation MetaCyc:PWY-5034 biological_process owl:Class GO:0033469 biolink:NamedThing gibberellin 12 metabolic process The chemical reactions and pathways involving gibberellin 12, (1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylic acid 1meta,4a-dimethyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylic acid. tmpzr1t_l9r_go_relaxed.owl gibberellin 12 metabolism|GA12 metabolic process|gibberellin A12 metabolic process biological_process owl:Class GO:1901753 biolink:NamedThing leukotriene A4 biosynthetic process The chemical reactions and pathways resulting in the formation of leukotriene A4. tmpzr1t_l9r_go_relaxed.owl LTA4 biosynthesis|eoxin A4 biosynthesis|leukotriene A4 biosynthesis|leukotriene A4 formation|leukotriene A4 anabolism|leukotriene A4 synthesis https://github.com/geneontology/go-ontology/issues/18848 yaf 2013-01-14T11:05:09Z biological_process owl:Class GO:0004392 biolink:NamedThing heme oxygenase (decyclizing) activity Catalysis of the reaction: heme b + 3 O2 + 3 reduced [NADPH-hemoprotein reductase] = biliverdin + CO + Fe2+ + H+ + 3 H2O + 3 oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl haem oxygenase (decyclizing) activity|heme,hydrogen-donor:oxygen oxidoreductase (alpha-methene-oxidizing, hydroxylating)|heme oxygenase activity|haem oxidase activity|heme oxidase activity|haem oxygenase activity|ORP33 proteins https://github.com/geneontology/go-ontology/issues/21106 MetaCyc:HEME-OXYGENASE-DECYCLIZING-RXN|RHEA:21764|Reactome:R-HSA-189398|EC:1.14.14.18 molecular_function owl:Class GO:0016712 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP19|substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)|cytochrome p450 activity|microsomal p450 activity|unspecific monooxygenase activity|flavoprotein monooxygenase activity|aryl-4-monooxygenase activity|flavoprotein-linked monooxygenase activity|xenobiotic monooxygenase activity|aryl hydrocarbon hydroxylase activity|microsomal P-450|microsomal monooxygenase activity UM-BBD_enzymeID:e0551|EC:1.14.14.-|Reactome:R-HSA-211966 GO:0050381|GO:0008402 molecular_function owl:Class GO:0006672 biolink:NamedThing ceramide metabolic process The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. tmpzr1t_l9r_go_relaxed.owl ceramide metabolism biological_process owl:Class GO:0060688 biolink:NamedThing regulation of morphogenesis of a branching structure Any process that modulates the rate, frequency, or extent of branching morphogenesis, the process in which the anatomical structures of branches are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-05T12:41:44Z biological_process owl:Class GO:1901319 biolink:NamedThing positive regulation of trehalose catabolic process Any process that activates or increases the frequency, rate or extent of trehalose catabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of trehalose catabolism|activation of mycose catabolism|up-regulation of trehalose degradation|upregulation of mykose catabolic process|activation of mycose catabolic process|up regulation of trehalose degradation|activation of mykose catabolic process|activation of trehalose catabolic process|up-regulation of mykose catabolism|activation of trehalose catabolism|up-regulation of mycose catabolism|up regulation of trehalose breakdown|up-regulation of mycose catabolic process|activation of mykose catabolism|upregulation of mycose catabolic process|up-regulation of trehalose catabolic process|positive regulation of mycose catabolism|upregulation of trehalose catabolic process|upregulation of mykose catabolism|positive regulation of mykose catabolic process|up regulation of trehalose catabolic process|upregulation of mycose catabolism|upregulation of trehalose degradation|up regulation of mycose catabolic process|up regulation of mykose catabolism|up-regulation of trehalose breakdown|activation of trehalose degradation|upregulation of trehalose breakdown|up regulation of trehalose catabolism|positive regulation of mykose catabolism|positive regulation of trehalose breakdown|up-regulation of trehalose catabolism|positive regulation of mycose catabolic process|activation of trehalose breakdown|up regulation of mykose catabolic process|up-regulation of mykose catabolic process|positive regulation of trehalose catabolism|positive regulation of trehalose degradation|up regulation of mycose catabolism al 2012-08-24T12:57:52Z biological_process owl:Class GO:0090062 biolink:NamedThing regulation of trehalose metabolic process Any process that modulates the frequency, rate or extent of trehalose metabolism, the chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-12T11:24:29Z biological_process owl:Class GO:0000461 biolink:NamedThing endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage at the 3'-end of the SSU-rRNA from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage at site D biological_process owl:Class GO:0031125 biolink:NamedThing rRNA 3'-end processing Any process involved in forming the mature 3' end of an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl rRNA 3' end processing biological_process owl:Class GO:0045122 biolink:NamedThing aflatoxin biosynthetic process The chemical reactions and pathways resulting in the formation of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450. tmpzr1t_l9r_go_relaxed.owl aflatoxin biosynthesis|aflatoxin anabolism|aflatoxin synthesis|aflatoxin formation biological_process owl:Class GO:0046222 biolink:NamedThing aflatoxin metabolic process The chemical reactions and pathways involving aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450. tmpzr1t_l9r_go_relaxed.owl aflatoxin B1 metabolic process|aflatoxin B1 metabolism|aflatoxin B2 metabolism|aflatoxin metabolism|aflatoxin B2 metabolic process|aflatoxin B metabolic process https://github.com/geneontology/go-ontology/issues/18291 GO:0043389|GO:0043390|GO:0043391 biological_process owl:Class GO:0043910 biolink:NamedThing ATP:coenzyme F420 adenylyltransferase activity Catalysis of the reaction: ATP + factor gamma-F420-2 + H+ = coenzyme F390-A + diphosphate. tmpzr1t_l9r_go_relaxed.owl coenzyme F390-A synthetase activity|ATP:coenzyme F420 adenyltransferase activity MetaCyc:RXN-9385 molecular_function owl:Class GO:0102629 biolink:NamedThing patuletin 3'-O-methyltransferase activity Catalysis of the reaction: patuletin + S-adenosyl-L-methionine <=> quercetagetin 3',6-dimethyl ether + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15534 molecular_function owl:Class GO:1901750 biolink:NamedThing leukotriene D4 biosynthetic process The chemical reactions and pathways resulting in the formation of leukotriene D4. tmpzr1t_l9r_go_relaxed.owl leukotriene D4 formation|leukotriene D4 anabolism|leukotriene D4 synthesis|leukotriene D4 biosynthesis yaf 2013-01-14T10:56:21Z biological_process owl:Class GO:1901570 biolink:NamedThing fatty acid derivative biosynthetic process The chemical reactions and pathways resulting in the formation of fatty acid derivative. tmpzr1t_l9r_go_relaxed.owl fatty acid derivative synthesis|fatty acid derivative formation|fatty acid derivative anabolism|fatty acid derivative biosynthesis pr 2012-11-04T17:13:44Z biological_process owl:Class GO:1904011 biolink:NamedThing cellular response to Aroclor 1254 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an Aroclor 1254 stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T18:35:06Z biological_process owl:Class GO:1904010 biolink:NamedThing response to Aroclor 1254 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an Aroclor 1254 stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T18:35:00Z biological_process owl:Class GO:0031539 biolink:NamedThing positive regulation of anthocyanin metabolic process Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. tmpzr1t_l9r_go_relaxed.owl up-regulation of anthocyanin metabolic process|up regulation of anthocyanin metabolic process|stimulation of anthocyanin metabolic process|positive regulation of anthocyanin metabolism|activation of anthocyanin metabolic process|upregulation of anthocyanin metabolic process biological_process owl:Class GO:0002951 biolink:NamedThing leukotriene-C(4) hydrolase Catalysis of the reaction Leukotriene C(4) + H(2)O= leukotriene D(4) + L-glutamate. tmpzr1t_l9r_go_relaxed.owl The mouse enzyme is specific for leukotriene C(4), while the human enzyme also has considerable activity toward glutathione and oxidized glutathione (cf. EC:3.4.19.13). PMID:9774450 cites that the mouse form of this enzyme failed to measure activity towards glutathione. molecular_function owl:Class GO:0070122 biolink:NamedThing isopeptidase activity Catalysis of the hydrolysis of an isopeptide bond. An isopeptide bond is an amide linkage between a carboxyl group of one amino acid and an amino group of another amino acid in which at least one of these groups is not on the a-carbon of one of the amino acids (for example, the link between an epsilon-amino group of a lysine molecule to a carboxyl group on a second amino acid is an isopeptide bond). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005989 biolink:NamedThing lactose biosynthetic process The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose. tmpzr1t_l9r_go_relaxed.owl lactose anabolism|lactose formation|lactose synthesis|lactose biosynthesis biological_process owl:Class GO:0046351 biolink:NamedThing disaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of disaccharides, sugars composed of two monosaccharide units. tmpzr1t_l9r_go_relaxed.owl disaccharide formation|disaccharide synthesis|disaccharide biosynthesis|disaccharide anabolism biological_process owl:Class GO:0008010 biolink:NamedThing structural constituent of chitin-based larval cuticle The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of a larva. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl structural constituent of larval cuticle molecular_function owl:Class GO:0005214 biolink:NamedThing structural constituent of chitin-based cuticle The action of a molecule that contributes to the structural integrity of a chitin-based cuticle. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903181 biolink:NamedThing positive regulation of dopamine biosynthetic process Any process that activates or increases the frequency, rate or extent of dopamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of dopamine anabolism|up regulation of dopamine biosynthetic process|up-regulation of dopamine formation|up regulation of dopamine biosynthesis|up regulation of dopamine synthesis|upregulation of dopamine anabolism|activation of dopamine biosynthetic process|activation of dopamine formation|up regulation of dopamine anabolism|positive regulation of dopamine biosynthesis|up regulation of dopamine formation|upregulation of dopamine biosynthesis|upregulation of dopamine biosynthetic process|positive regulation of dopamine formation|activation of dopamine synthesis|up-regulation of dopamine anabolism|activation of dopamine biosynthesis|positive regulation of dopamine anabolism|up-regulation of dopamine biosynthetic process|up-regulation of dopamine synthesis|upregulation of dopamine synthesis|up-regulation of dopamine biosynthesis|upregulation of dopamine formation|positive regulation of dopamine synthesis bf 2014-07-14T12:17:53Z biological_process owl:Class GO:0032977 biolink:NamedThing membrane insertase activity Binds transmembrane domain-containing proteins and mediates their integration into a membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16976|https://github.com/geneontology/go-ontology/issues/20414 Reactome:R-HSA-1307803|Reactome:R-HSA-1299482|Reactome:R-HSA-1268025 molecular_function owl:Class GO:0090347 biolink:NamedThing regulation of cellular organohalogen metabolic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:1900691 biolink:NamedThing positive regulation of gliotoxin biosynthetic process Any process that activates or increases the frequency, rate or extent of gliotoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of gliotoxin anabolism|positive regulation of gliotoxin synthesis|upregulation of gliotoxin biosynthetic process|up-regulation of gliotoxin formation|activation of gliotoxin synthesis|up regulation of gliotoxin formation|up regulation of gliotoxin anabolism|upregulation of gliotoxin synthesis|up-regulation of gliotoxin anabolism|activation of gliotoxin anabolism|positive regulation of gliotoxin biosynthesis|activation of gliotoxin biosynthesis|up regulation of gliotoxin biosynthetic process|up-regulation of gliotoxin biosynthesis|activation of gliotoxin biosynthetic process|up regulation of gliotoxin synthesis|up regulation of gliotoxin biosynthesis|up-regulation of gliotoxin biosynthetic process|up-regulation of gliotoxin synthesis|upregulation of gliotoxin biosynthesis|upregulation of gliotoxin formation|upregulation of gliotoxin anabolism|positive regulation of gliotoxin formation|activation of gliotoxin formation di 2012-05-22T04:52:08Z biological_process owl:Class GO:0075329 biolink:NamedThing regulation of arbuscule formation for nutrient acquisition from host Any process that modulates the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0004424 biolink:NamedThing imidazoleglycerol-phosphate dehydratase activity Catalysis of the reaction: D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate hydro-lyase [3-(imidazol-4-yl)-2-oxopropyl-phosphate-forming]|imidazoleglycerol phosphate dehydratase activity|IGP dehydratase activity|D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate hydro-lyase activity MetaCyc:IMIDPHOSDEHYD-RXN|RHEA:11040|KEGG_REACTION:R03457|EC:4.2.1.19 molecular_function owl:Class GO:1901112 biolink:NamedThing actinorhodin biosynthetic process The chemical reactions and pathways resulting in the formation of actinorhodin. tmpzr1t_l9r_go_relaxed.owl actinorhodin synthesis|actinorhodin biosynthesis|actinorhodin anabolism|actinorhodin formation yaf 2012-07-11T03:06:08Z biological_process owl:Class GO:1903098 biolink:NamedThing negative regulation of CENP-A containing nucleosome assembly Any process that stops, prevents or reduces the frequency, rate or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres. tmpzr1t_l9r_go_relaxed.owl down regulation of CenH3-containing nucleosome assembly at centromere|negative regulation of centromere-specific nucleosome assembly|inhibition of centromeric DNA replication-independent nucleosome assembly|negative regulation of CENP-A deposition|down regulation of centromere specific nucleosome exchange|down regulation of CENP-A loading|inhibition of CENP-A loading|negative regulation of DNA replication-independent nucleosome assembly at centromere|down regulation of centromere-specific nucleosome assembly|downregulation of centromere specific nucleosome exchange|downregulation of CenH3-containing nucleosome assembly at centromere|downregulation of centromeric DNA replication-independent nucleosome assembly|inhibition of CENP-A deposition|inhibition of DNA replication-independent nucleosome assembly at centromere|down-regulation of CenH3-containing nucleosome assembly at centromere|down regulation of CENP-A containing nucleosome assembly at centromere|inhibition of centromere specific nucleosome exchange|down regulation of DNA replication-independent nucleosome assembly at centromere|down-regulation of CENP-A loading|down-regulation of CENP-A deposition|downregulation of CENP-A deposition|negative regulation of CENP-A loading|downregulation of DNA replication-independent nucleosome assembly at centromere|downregulation of centromere-specific histone exchange|down regulation of centromeric DNA replication-independent nucleosome assembly|down-regulation of centromere-specific histone exchange|downregulation of centromere-specific nucleosome assembly|down-regulation of centromere specific nucleosome exchange|downregulation of CENP-A loading|negative regulation of centromere specific nucleosome exchange|down-regulation of CENP-A containing nucleosome assembly at centromere|inhibition of CENP-A containing nucleosome assembly at centromere|inhibition of centromere-specific histone exchange|down-regulation of centromeric DNA replication-independent nucleosome assembly|inhibition of centromere-specific nucleosome assembly|negative regulation of centromere-specific histone exchange|down regulation of CENP-A deposition|negative regulation of CenH3-containing nucleosome assembly at centromere|down regulation of centromere-specific histone exchange|down-regulation of centromere-specific nucleosome assembly|inhibition of CenH3-containing nucleosome assembly at centromere|down-regulation of DNA replication-independent nucleosome assembly at centromere|downregulation of CENP-A containing nucleosome assembly at centromere|negative regulation of centromeric DNA replication-independent nucleosome assembly vw 2014-06-03T16:15:36Z biological_process owl:Class GO:1900050 biolink:NamedThing negative regulation of histone exchange Any process that stops, prevents or reduces the frequency, rate or extent of histone exchange. tmpzr1t_l9r_go_relaxed.owl inhibition of histone chaperone|negative regulation of histone chaperone|downregulation of histone replacement|downregulation of histone exchange|inhibition of histone replacement|down-regulation of histone chaperone|down regulation of histone chaperone|inhibition of histone exchange|down regulation of histone exchange|down-regulation of histone replacement|downregulation of histone chaperone|down-regulation of histone exchange|down regulation of histone replacement|negative regulation of histone replacement se 2012-01-19T10:59:09Z biological_process owl:Class GO:1903178 biolink:NamedThing positive regulation of tyrosine 3-monooxygenase activity Any process that activates or increases the frequency, rate or extent of tyrosine 3-monooxygenase activity. tmpzr1t_l9r_go_relaxed.owl stimulation of TH activity|upregulation of tyrosine hydroxylase activity|positive regulation of tyrosine 3-hydroxylase activity|activation of tyrosine 3-monooxygenase activity|up regulation of L-tyrosine hydroxylase activity|positive regulation of L-tyrosine hydroxylase activity|upregulation of tyrosine 3-monooxygenase activity|up-regulation of L-tyrosine hydroxylase activity|up regulation of tyrosine 3-hydroxylase activity|positive regulation of tyrosine hydroxylase activity|up regulation of tyrosine 3-monooxygenase activity|activation of L-tyrosine hydroxylase activity|up-regulation of tyrosine 3-hydroxylase activity|up-regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|up regulation of tyrosine hydroxylase activity|upregulation of tyrosine 3-hydroxylase activity|upregulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|positive regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|activation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|upregulation of L-tyrosine hydroxylase activity|up-regulation of tyrosine hydroxylase activity|positive regulation of TH activity|activation of tyrosine 3-hydroxylase activity|activation of tyrosine hydroxylase activity|up regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|up-regulation of tyrosine 3-monooxygenase activity bf 2014-07-14T10:39:21Z biological_process owl:Class GO:0061884 biolink:NamedThing regulation of mini excitatory postsynaptic potential Any process that modulates the frequency, rate or extent of mini excitatory postsynaptic potential. Mini excitatory postsynaptic potential is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-30T15:35:46Z biological_process owl:Class GO:1904762 biolink:NamedThing positive regulation of myofibroblast differentiation Any process that activates or increases the frequency, rate or extent of myofibroblast differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of myofibroblast cell differentiation|activation of myofibroblast cell differentiation|up regulation of myofibroblast differentiation|activation of myofibroblast differentiation|upregulation of myofibroblast differentiation|upregulation of myofibroblast cell differentiation|up-regulation of myofibroblast differentiation|up-regulation of myofibroblast cell differentiation|positive regulation of myofibroblast cell differentiation rph 2015-10-23T12:15:17Z biological_process owl:Class GO:0072132 biolink:NamedThing mesenchyme morphogenesis The process in which the anatomical structures of a mesenchymal tissue are generated and organized. A mesenchymal tissue is made up of loosely packed stellate cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:17:15Z biological_process owl:Class GO:0099567 biolink:NamedThing calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration The directed change of free calcium ion concentration in the postsynaptic cytosol via the reversible binding of calcium ions to calcium-binding proteins in the cytosol thereby modulating the spatial and temporal dynamics of changes in postsynaptic cytosolic calcium concentrations. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic cytosolic calcium ion concentration by calcium ion buffering|postsynaptic calcium ion buffering|calcium ion binding involved in regulation of postsynaptic cytosolic calcium levels molecular_function owl:Class GO:0005509 biolink:NamedThing calcium ion binding Binding to a calcium ion (Ca2+). tmpzr1t_l9r_go_relaxed.owl calcium ion storage activity molecular_function owl:Class GO:0009821 biolink:NamedThing alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases). tmpzr1t_l9r_go_relaxed.owl alkaloid synthesis|alkaloid biosynthesis|alkaloid formation|alkaloid anabolism UM-BBD_enzymeID:e0711 biological_process owl:Class GO:0071395 biolink:NamedThing cellular response to jasmonic acid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:13:34Z biological_process owl:Class GO:2001011 biolink:NamedThing positive regulation of plant-type cell wall cellulose biosynthetic process Any process that activates or increases the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell wall cellulose biosynthesis|positive regulation of cellulose biosynthesis during cell wall biosynthesis tt 2011-08-08T08:47:30Z biological_process owl:Class GO:0097008 biolink:NamedThing (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity Catalysis of the reaction: (E)-nerolidol + NADPH + O2 = (3E)-4,8-dimethylnona-1,3,7-triene + NADP+ + 2 H2O. It is unknown whether this reaction proceeds by the direct release of the 4-carbon compound but-1-en-3-one, or whether the substrate is first degraded to C11-geranylacetone and then cleaved to produce (3E)-4,8-dimethylnona-1,3,7-triene (DMNT) and acetone. tmpzr1t_l9r_go_relaxed.owl (3E)-4,8-dimethylnona-1,3,7-triene synthase activity|DNMT synthase activity MetaCyc:RXN-8619 pr 2011-03-17T10:38:01Z molecular_function owl:Class GO:0002767 biolink:NamedThing immune response-inhibiting cell surface receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell capable of inhibiting an immune response. tmpzr1t_l9r_go_relaxed.owl immune response-inhibiting cell surface receptor signalling pathway biological_process owl:Class GO:0002765 biolink:NamedThing immune response-inhibiting signal transduction The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately leading to inhibition of an immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002569 biolink:NamedThing somatic diversification of immune receptors by N region addition The addition of variable numbers of random nucleotides by terminal deoxytransferase in the N regions of heavy chain immunoglobulin and T cell receptor genes. N regions are found at the V-D, D-D, V-J, and D-J recombinational junctions, depending on the immune receptor gene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072673 biolink:NamedThing lamellipodium morphogenesis A process that is carried out at the cellular level and in which the structure of a lamellipodium is organized. tmpzr1t_l9r_go_relaxed.owl lamellipodium organization mah 2011-02-21T03:11:55Z biological_process owl:Class GO:0120039 biolink:NamedThing plasma membrane bounded cell projection morphogenesis The process in which the anatomical structures of a plasma membrane bounded cell projection are generated and organized. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-28T23:39:37Z biological_process owl:Class GO:2000803 biolink:NamedThing endosomal signal transduction The process in which a signal is passed on to downstream components located at the endosome. Endosomes can provide important intracellular signaling platforms and provide spatial and temporal control over signal transduction. tmpzr1t_l9r_go_relaxed.owl signalling cascade in endosome|endosome-based signaling|signaling from endosome|signaling cascade in endosome|signaling pathway in endosome|signalling pathway in endosome bf 2011-07-01T03:45:12Z biological_process owl:Class GO:0035556 biolink:NamedThing intracellular signal transduction The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. tmpzr1t_l9r_go_relaxed.owl signal transduction via intracellular signaling cascade|intracellular signaling pathway|intracellular signaling chain|intracellular protein kinase cascade|signal transmission via intracellular cascade|intracellular signal transduction pathway|protein kinase cascade|intracellular signaling cascade bf 2010-05-14T01:14:37Z GO:0023034|GO:0007242|GO:0023013|GO:0007243 biological_process owl:Class GO:0008735 biolink:NamedThing carnitine dehydratase activity Catalysis of the reaction: (R)-carnitine = crotono-betaine + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-carnitine hydro-lyase [4-(trimethylammonio)but-2-enoate-forming]|L-carnitine dehydratase activity|L-carnitine hydro-lyase activity KEGG_REACTION:R01925|RHEA:14577|MetaCyc:CARNDEHYDRA-RXN|EC:4.2.1.89 molecular_function owl:Class GO:1900850 biolink:NamedThing negative regulation of pseurotin A biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of pseurotin A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of pseurotin A biosynthetic process|down-regulation of pseurotin A biosynthetic process|down regulation of pseurotin A biosynthetic process di 2012-06-07T09:45:49Z biological_process owl:Class GO:0120030 biolink:NamedThing positive regulation of cilium beat frequency involved in ciliary motility Any process that activates or increases the frequency of cilium beating involved in ciliary motility. tmpzr1t_l9r_go_relaxed.owl krc 2017-04-19T14:32:16Z biological_process owl:Class GO:0060296 biolink:NamedThing regulation of cilium beat frequency involved in ciliary motility Any process that modulates the frequency of cilium beating involved in ciliary motility. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006016 biolink:NamedThing 2-deoxyribose 1-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 2-deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl 2-deoxyribose 1-phosphate anabolism|2-deoxyribose 1-phosphate formation|2-deoxyribose 1-phosphate synthesis|2-deoxyribose 1-phosphate biosynthesis biological_process owl:Class GO:0046384 biolink:NamedThing 2-deoxyribose 1-phosphate metabolic process The chemical reactions and pathways involving 2-deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyribose 1-phosphate metabolism|2-deoxyribose 1-phosphate metabolism|deoxyribose 1-phosphate metabolic process GO:0046388 biological_process owl:Class GO:1990136 biolink:NamedThing linoleate 9S-lipoxygenase activity Catalysis of the reaction: linoleate + O2 = (9S,10E,12Z)-9-hydroperoxy-10,12-octadecadienoate. tmpzr1t_l9r_go_relaxed.owl linoleate:oxygen 9S-oxidoreductase activity|9S-lipoxygenase activity|9-lipoxygenase activity|linoleate 9-lipoxygenase activity RHEA:30291|EC:1.13.11.58 pr 2013-07-03T12:20:57Z molecular_function owl:Class GO:0010855 biolink:NamedThing adenylate cyclase inhibitor activity Decreases the activity of the enzyme that catalyzes the reaction: ATP = 3',5'-cyclic AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010854 biolink:NamedThing adenylate cyclase regulator activity Binds to and modulates the activity of the enzyme that catalyzes the reaction: ATP = 3',5'-cyclic AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015668 biolink:NamedThing type III site-specific deoxyribonuclease activity Catalysis of the endonucleolytic cleavage of DNA to give double-stranded fragments with terminal 5'-phosphates. ATP hydrolysis is required. Cleavage is dependent on the presence of two copies of a specific recognition sequence in an inverse orientation in the DNA. Cleavage occurs at a specific distance from one of the recognition sites. tmpzr1t_l9r_go_relaxed.owl type III restriction enzyme activity MetaCyc:3.1.21.5-RXN|EC:3.1.21.5 molecular_function owl:Class GO:0016888 biolink:NamedThing endodeoxyribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl endodeoxyribonuclease activity, producing 5' phosphomonoesters Reactome:R-HSA-912368|EC:3.1.21.- molecular_function owl:Class GO:0010008 biolink:NamedThing endosome membrane The lipid bilayer surrounding an endosome. tmpzr1t_l9r_go_relaxed.owl endosomal membrane NIF_Subcellular:sao978443756 cellular_component owl:Class GO:2000437 biolink:NamedThing regulation of monocyte extravasation Any process that modulates the frequency, rate or extent of monocyte extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:24:08Z biological_process owl:Class GO:0002691 biolink:NamedThing regulation of cellular extravasation Any process that modulates the frequency, rate, or extent of cellular extravasation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099181 biolink:NamedThing structural constituent of presynapse The action of a molecule that contributes to the structural integrity of a presynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T13:42:46Z molecular_function owl:Class GO:0098918 biolink:NamedThing structural constituent of synapse The action of a molecule that contributes to the structural integrity of a synapse. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904044 biolink:NamedThing response to aldosterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldosterone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-16T23:07:53Z biological_process owl:Class GO:0102541 biolink:NamedThing D-galactose 6-phosphate 1-epimerase activity Catalysis of the reaction: alpha-D-galactose 6-phosphate = beta-D-galactose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14816 molecular_function owl:Class GO:0016857 biolink:NamedThing racemase and epimerase activity, acting on carbohydrates and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6787677|EC:5.1.3.- molecular_function owl:Class GO:0014042 biolink:NamedThing positive regulation of neuron maturation Any process that activates or increases the frequency, rate or extent of neuron maturation. tmpzr1t_l9r_go_relaxed.owl upregulation of neuron maturation|stimulation of neuron maturation|up-regulation of neuron maturation|activation of neuron maturation|up regulation of neuron maturation biological_process owl:Class GO:0090498 biolink:NamedThing extrinsic component of Golgi membrane The component of a Golgi membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to Golgi membrane tb 2012-10-18T14:12:48Z cellular_component owl:Class GO:1903303 biolink:NamedThing negative regulation of pyruvate kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of pyruvate kinase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of pyruvate kinase activity|down-regulation of phosphoenol transphosphorylase activity|down regulation of phosphoenol transphosphorylase activity|downregulation of ATP:pyruvate 2-O-phosphotransferase activity|negative regulation of ATP:pyruvate 2-O-phosphotransferase activity|inhibition of ATP:pyruvate 2-O-phosphotransferase activity|inhibition of pyruvate kinase activity|downregulation of phosphoenol transphosphorylase activity|down regulation of ATP:pyruvate 2-O-phosphotransferase activity|down regulation of phosphoenolpyruvate kinase activity|downregulation of pyruvate kinase activity|down regulation of pyruvate kinase activity|down-regulation of phosphoenolpyruvate kinase activity|negative regulation of phosphoenol transphosphorylase activity|downregulation of phosphoenolpyruvate kinase activity|inhibition of phosphoenol transphosphorylase activity|inhibition of phosphoenolpyruvate kinase activity|negative regulation of phosphoenolpyruvate kinase activity|down-regulation of ATP:pyruvate 2-O-phosphotransferase activity mr 2014-08-15T23:25:58Z biological_process owl:Class GO:1903302 biolink:NamedThing regulation of pyruvate kinase activity Any process that modulates the frequency, rate or extent of pyruvate kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP:pyruvate 2-O-phosphotransferase activity|regulation of phosphoenol transphosphorylase activity|regulation of phosphoenolpyruvate kinase activity mr 2014-08-15T23:25:51Z biological_process owl:Class GO:1902313 biolink:NamedThing positive regulation of copper ion transmembrane transport Any process that activates or increases the frequency, rate or extent of copper ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of copper ion transmembrane transport|upregulation of copper ion transmembrane transport|positive regulation of copper ion membrane transport|activation of copper cation transmembrane transport|positive regulation of copper cation transmembrane transport|up regulation of copper ion membrane transport|activation of copper ion transmembrane transport|up regulation of copper ion transmembrane transport|upregulation of copper ion membrane transport|upregulation of copper cation transmembrane transport|up-regulation of copper ion membrane transport|up regulation of copper cation transmembrane transport|activation of copper ion membrane transport|up-regulation of copper cation transmembrane transport di 2013-07-19T20:59:45Z biological_process owl:Class GO:1902311 biolink:NamedThing regulation of copper ion transmembrane transport Any process that modulates the frequency, rate or extent of copper ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of copper ion membrane transport|regulation of copper cation transmembrane transport di 2013-07-19T20:59:28Z biological_process owl:Class GO:0002627 biolink:NamedThing positive regulation of T cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of T cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl up regulation of T cell antigen processing and presentation|positive regulation of T-cell antigen processing and presentation|upregulation of T cell antigen processing and presentation|positive regulation of T-lymphocyte antigen processing and presentation|up-regulation of T cell antigen processing and presentation|positive regulation of T lymphocyte antigen processing and presentation|activation of T cell antigen processing and presentation|stimulation of T cell antigen processing and presentation biological_process owl:Class GO:0002625 biolink:NamedThing regulation of T cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of T cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl regulation of T-cell antigen processing and presentation|regulation of T lymphocyte antigen processing and presentation|regulation of T-lymphocyte antigen processing and presentation biological_process owl:Class GO:0002667 biolink:NamedThing regulation of T cell anergy Any process that modulates the frequency, rate, or extent of T cell anergy. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte anergy|regulation of T-lymphocyte anergy|regulation of T-cell anergy biological_process owl:Class GO:0002911 biolink:NamedThing regulation of lymphocyte anergy Any process that modulates the frequency, rate, or extent of lymphocyte anergy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102551 biolink:NamedThing homogentisate geranylgeranyl transferase activity Catalysis of the reaction: 2-trans,6-trans,10-trans-geranylgeranyl diphosphate + homogentisate + H+ <=> diphosphoric acid + 2-methyl-6-geranylgeranyl-1,4-benzoquinol + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl RHEA:38003|EC:2.5.1.116|MetaCyc:RXN-14929 molecular_function owl:Class GO:0035150 biolink:NamedThing regulation of tube size Ensuring that a tube is of the correct length and diameter. Tube size must be maintained not only during tube formation, but also throughout development and in some physiological processes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090066 biolink:NamedThing regulation of anatomical structure size Any process that modulates the size of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-02T11:00:08Z biological_process owl:Class GO:0051951 biolink:NamedThing positive regulation of glutamate uptake involved in transmission of nerve impulse Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of L-glutamate into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of glutamate uptake during transmission of nerve impulse|up-regulation of glutamate uptake during transmission of nerve impulse|positive regulation of glutamate reuptake|upregulation of glutamate uptake during transmission of nerve impulse|positive regulation of glutamate uptake involved in conduction of nerve impulse|activation of glutamate uptake during transmission of nerve impulse|stimulation of glutamate uptake during transmission of nerve impulse|up regulation of glutamate uptake during transmission of nerve impulse biological_process owl:Class GO:0002038 biolink:NamedThing positive regulation of L-glutamate import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-glutamate import into a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of L-glutamate uptake|upregulation of L-glutamate transport|up regulation of L-glutamate transport|activation of L-glutamate import|up-regulation of L-glutamate transport|upregulation of L-glutamate uptake|positive regulation of L-glutamate import|up regulation of L-glutamate import|upregulation of L-glutamate import|activation of L-glutamate transport|activation of L-glutamate uptake|up regulation of L-glutamate uptake|positive regulation of L-glutamate transport|up-regulation of L-glutamate import|up-regulation of L-glutamate uptake|stimulation of L-glutamate transport al 2012-06-13T07:34:38Z GO:1900922 biological_process owl:Class GO:0031123 biolink:NamedThing RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl RNA 3' end processing biological_process owl:Class GO:0008194 biolink:NamedThing UDP-glycosyltransferase activity Catalysis of the transfer of a glycosyl group from a UDP-sugar to a small hydrophobic molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-162730 molecular_function owl:Class GO:0016757 biolink:NamedThing glycosyltransferase activity Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transglycosylase activity|transferase activity, transferring glycosyl groups|transferase activity, transferring other glycosyl groups|transglycosidase activity Reactome:R-HSA-5173005|EC:2.4.-.-|Reactome:R-HSA-6785565 GO:0016932 molecular_function owl:Class GO:0050843 biolink:NamedThing S-adenosylmethionine catabolic process The chemical reactions and pathways resulting in the breakdown of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. tmpzr1t_l9r_go_relaxed.owl SAM catabolic process|S-adenosyl methionine catabolic process|S-adenosylmethionine degradation|S-adenosylmethionine catabolism|S-adenosyl methionine catabolism|S-adenosylmethionine breakdown biological_process owl:Class GO:0061280 biolink:NamedThing epithelial cell migration involved in mesonephric proximal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to mesonephric proximal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:23:43Z biological_process owl:Class GO:0061278 biolink:NamedThing epithelial cell migration involved in mesonephric nephron tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to mesonephric nephron tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:18:53Z biological_process owl:Class GO:0071319 biolink:NamedThing cellular response to benzoic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:10:20Z biological_process owl:Class GO:1900669 biolink:NamedThing positive regulation of endocrocin biosynthetic process Any process that activates or increases the frequency, rate or extent of endocrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of endocrocin biosynthesis|activation of endocrocin anabolism|up-regulation of endocrocin biosynthetic process|up regulation of endocrocin biosynthetic process|positive regulation of endocrocin biosynthesis|activation of endocrocin biosynthetic process|upregulation of endocrocin formation|positive regulation of endocrocin synthesis|upregulation of endocrocin biosynthesis|positive regulation of endocrocin formation|up regulation of endocrocin synthesis|up regulation of endocrocin anabolism|up-regulation of endocrocin synthesis|up regulation of endocrocin formation|upregulation of endocrocin synthesis|activation of endocrocin synthesis|activation of endocrocin formation|up-regulation of endocrocin biosynthesis|upregulation of endocrocin biosynthetic process|up-regulation of endocrocin anabolism|positive regulation of endocrocin anabolism|activation of endocrocin biosynthesis|upregulation of endocrocin anabolism|up-regulation of endocrocin formation di 2012-05-22T04:16:35Z biological_process owl:Class GO:0034418 biolink:NamedThing urate biosynthetic process The chemical reactions and pathways resulting in the formation of urate, the anion of uric acid, 2,6,8-trioxypurine. tmpzr1t_l9r_go_relaxed.owl urate synthesis|urate anabolism|urate biosynthesis|uric acid biosynthetic process|urate formation biological_process owl:Class GO:0032987 biolink:NamedThing protein-lipid complex disassembly The disaggregation of a protein-lipid complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071825 biolink:NamedThing protein-lipid complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl protein-lipid complex subunit organisation mah 2010-09-08T10:04:36Z biological_process owl:Class GO:0042824 biolink:NamedThing MHC class I peptide loading complex A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules. tmpzr1t_l9r_go_relaxed.owl peptide-loading complex|PLC Note that although this complex is located in the endoplasmic reticulum, there is some evidence that it may also be found in the Golgi. cellular_component owl:Class GO:0099569 biolink:NamedThing presynaptic cytoskeleton The portion of the cytoskeleton contained within the presynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005856 biolink:NamedThing cytoskeleton Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cytoskeleton cellular_component owl:Class GO:0050602 biolink:NamedThing monoprenyl isoflavone epoxidase activity Catalysis of the reaction: O2 + NADPH + H+ + 7-O-methylluteone = H2O + NADP+ + dihydrofurano derivatives. tmpzr1t_l9r_go_relaxed.owl monoprenyl isoflavone monooxygenase activity|7-O-methylluteone,NADPH:O2 oxidoreductase activity|7-O-methylluteone:O2 oxidoreductase activity EC:1.14.99.34|MetaCyc:1.14.99.34-RXN molecular_function owl:Class GO:0007063 biolink:NamedThing regulation of sister chromatid cohesion Any process that modulates the frequency, rate or extent of sister chromatid cohesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090055 biolink:NamedThing positive regulation of silent mating-type cassette heterochromatin assembly Any process that increases the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of chromatin silencing at silent mating-type cassette https://github.com/geneontology/go-ontology/issues/19112 tb 2009-08-07T10:54:36Z biological_process owl:Class GO:0090054 biolink:NamedThing regulation of silent mating-type cassette heterochromatin assembly Any process that modulates the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl regulation of chromatin silencing at silent mating-type cassette https://github.com/geneontology/go-ontology/issues/19112 tb 2009-08-07T10:52:59Z biological_process owl:Class GO:1904048 biolink:NamedThing regulation of spontaneous neurotransmitter secretion Any process that modulates the frequency, rate or extent of spontaneous neurotransmitter secretion. tmpzr1t_l9r_go_relaxed.owl regulation of stimulus-independent neurotransmitter secretion An example of this is PARK2 / parkin in human (O60260) in PMID:22314364 (inferred from mutant phenotype). pad 2015-03-17T10:37:11Z biological_process owl:Class GO:0046928 biolink:NamedThing regulation of neurotransmitter secretion Any process that modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001302 biolink:NamedThing lipoxin A4 metabolic process The chemical reactions and pathways involving lipoxin A4. Lipoxin A4 is a C20 hydroxy fatty acid having (5S)-, (6R)- and (15S)-hydroxy groups as well as (7E)- (9E)-, (11Z)- and (13E)-double bonds. tmpzr1t_l9r_go_relaxed.owl LXA4 metabolic process|LXA4 metabolism|lipoxin A4 metabolism bf 2012-03-07T11:13:12Z biological_process owl:Class GO:0044023 biolink:NamedThing histone kinase activity (H4-S1 specific) Catalysis of the transfer of a phosphate group to the serine-1 residue of the N-terminal tail of histone H4. tmpzr1t_l9r_go_relaxed.owl histone serine kinase activity (H4-S1 specific)|histone-serine kinase activity (H4-S1 specific) molecular_function owl:Class GO:0035174 biolink:NamedThing histone serine kinase activity Catalysis of the transfer of a phosphate group to a serine residue of a histone. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl histone-serine kinase activity molecular_function owl:Class GO:0070014 biolink:NamedThing sucrase-isomaltase complex A protein complex that possesses oligo-1,6-glucosidase activity; the complex is a heterodimer located in the cell membrane, and is formed by proteolytic cleavage of a single precursor polypeptide. The two subunits have different substrate specificities. tmpzr1t_l9r_go_relaxed.owl oligo-1,6-glucosidase complex Wikipedia:Sucrase-isomaltase cellular_component owl:Class GO:1902687 biolink:NamedThing glucosidase complex A protein complex which is capable of glucosidase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is ygjK in E. coli (P42592) in PMID:23826932. bhm 2014-02-12T10:55:10Z cellular_component owl:Class GO:0140448 biolink:NamedThing signaling receptor ligand precursor processing The cleavage of a peptide bond in a precursor form of a signaling receptor ligand, resulting in the mature (active) form of the ligand. tmpzr1t_l9r_go_relaxed.owl ligand maturation|signal maturation https://github.com/geneontology/go-ontology/issues/19216 pg 2020-04-03T13:30:04Z GO:0035638 biological_process owl:Class GO:0048295 biolink:NamedThing positive regulation of isotype switching to IgE isotypes Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes. tmpzr1t_l9r_go_relaxed.owl positive regulation of class switching to IgE isotypes|positive regulation of class switch recombination to IgE isotypes|stimulation of isotype switching to IgE isotypes|positive regulation of isotype switch recombination to IgE isotypes|up regulation of isotype switching to IgE isotypes|activation of isotype switching to IgE isotypes|up-regulation of isotype switching to IgE isotypes|upregulation of isotype switching to IgE isotypes biological_process owl:Class GO:0060353 biolink:NamedThing regulation of cell adhesion molecule production Any process that modulates the rate, frequency or extent of cell adhesion molecule production. Cell adhesion molecule production is the appearance of a cell adhesion molecule as a result of its biosynthesis or a decrease in its catabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048047 biolink:NamedThing mating behavior, sex discrimination The behavior of individuals for the purpose of discriminating between the sexes, for the purpose of finding a suitable mating partner. tmpzr1t_l9r_go_relaxed.owl mating behaviour, sex discrimination biological_process owl:Class GO:2001252 biolink:NamedThing positive regulation of chromosome organization Any process that activates or increases the frequency, rate or extent of chromosome organization. tmpzr1t_l9r_go_relaxed.owl positive regulation of chromosome organisation|positive regulation of maintenance of genome integrity|positive regulation of nuclear genome maintenance|positive regulation of chromosome organization and biogenesis yaf 2011-12-02T02:01:26Z biological_process owl:Class GO:0070857 biolink:NamedThing regulation of bile acid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of bile acids. tmpzr1t_l9r_go_relaxed.owl regulation of bile acid anabolism|regulation of bile acid synthesis|regulation of bile acid biosynthesis|regulation of bile acid formation mah 2009-08-14T03:09:02Z biological_process owl:Class GO:0010112 biolink:NamedThing regulation of systemic acquired resistance Any process that modulates the frequency, rate or extent of systemic acquired resistance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052747 biolink:NamedThing sinapyl alcohol dehydrogenase activity Catalysis of the reaction: sinapaldehyde + NADPH + H+ = sinapyl-alcohol + NADP+. tmpzr1t_l9r_go_relaxed.owl sinapyl-alcohol:NADP+ oxidoreductase activity|sinapyl-alcohol dehydrogenase activity MetaCyc:RXN-1125|KEGG_REACTION:R03918|EC:1.1.1.195|RHEA:45704 2011-09-21T12:42:06Z molecular_function owl:Class GO:0018458 biolink:NamedThing isopiperitenol dehydrogenase activity Catalysis of the reaction: (1S,6R)-isopiperitenol + NAD(+) = (6R)-isoperitenone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (-)-trans-isopiperitenol:NAD+ oxidoreductase activity MetaCyc:ISOPIPERITENOL-DEHYDROGENASE-RXN|KEGG_REACTION:R03261|RHEA:20860|EC:1.1.1.223|UM-BBD_reactionID:r0740 molecular_function owl:Class GO:1901442 biolink:NamedThing regulation of response to furfural Any process that modulates the frequency, rate or extent of response to furfural. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:09:26Z biological_process owl:Class GO:0048583 biolink:NamedThing regulation of response to stimulus Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0071384 biolink:NamedThing cellular response to corticosteroid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:52:07Z biological_process owl:Class GO:0071383 biolink:NamedThing cellular response to steroid hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:49:02Z biological_process owl:Class GO:0002908 biolink:NamedThing regulation of peripheral B cell deletion Any process that modulates the frequency, rate, or extent of peripheral B cell deletion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002658 biolink:NamedThing regulation of peripheral tolerance induction Any process that modulates the frequency, rate, or extent of peripheral tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106266 biolink:NamedThing 3-chloro THPH synthase activity Catalysis of the reaction: 2,4,6-trihydroxyphenylhexan-1-one + chloride + FADH2 + O2 = (3-chloro-2,4,6-trihydroxyphenyl)hexan-1-one + FAD + H+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:64356 hjd 2020-06-02T18:13:44Z molecular_function owl:Class GO:0000281 biolink:NamedThing mitotic cytokinesis A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis after mitosis biological_process owl:Class GO:0060521 biolink:NamedThing mesenchymal-epithelial cell signaling involved in prostate induction Signaling at short range from urogenital sinus mesenchymal cells to cells of the urogenital epithelium resulting in the epithelial cells adopting a prostatic fate. tmpzr1t_l9r_go_relaxed.owl mesenchymal-epithelial cell signalling involved in prostate induction biological_process owl:Class GO:0060522 biolink:NamedThing inductive mesenchymal to epithelial cell signaling Signaling at short range from mesenchymal cells to cells of an epithelium that results in a developmental change in the epithelial cells. tmpzr1t_l9r_go_relaxed.owl inductive mesenchymal to epithelial cell signalling biological_process owl:Class GO:1901099 biolink:NamedThing negative regulation of signal transduction in absence of ligand Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction in absence of ligand. tmpzr1t_l9r_go_relaxed.owl down regulation of basal signaling|down-regulation of basal signaling|down regulation of signal transduction in absence of agonist|inhibition of signal transduction in absence of ligand|down-regulation of signal transduction in absence of ligand|down regulation of non-classical signal transduction|down-regulation of signal transduction in absence of agonist|downregulation of non-classical signal transduction|downregulation of basal signaling|down regulation of signal transduction in absence of ligand|downregulation of signal transduction in absence of agonist|downregulation of signal transduction in absence of ligand|negative regulation of non-classical signal transduction|down-regulation of non-classical signal transduction|negative regulation of signal transduction in absence of agonist al 2012-07-10T10:31:08Z biological_process owl:Class GO:0071982 biolink:NamedThing maintenance of diapause The dormancy process that results an organism remaining in diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-21T04:46:32Z biological_process owl:Class GO:0047224 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the reaction: N-acetyl-D-galactosalaminyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,3-N-acetyl-D-galactosaminyl-R + UDP. tmpzr1t_l9r_go_relaxed.owl mucin core 3 beta3-GlcNAc-transferase activity|core 3beta-GlcNAc-transferase activity|core 3-beta-GlcNAc-transferase activity|UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to N-acetyl-D-galactosaminyl-R) beta-1,3-N-acetyl-D-glucosaminyltransferase activity|O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III activity|uridine diphosphoacetylglucosamine-mucin beta(1->3)-acetylglucosaminyltransferase activity MetaCyc:2.4.1.147-RXN|EC:2.4.1.147 molecular_function owl:Class GO:0009294 biolink:NamedThing DNA mediated transformation The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material. tmpzr1t_l9r_go_relaxed.owl DNA-mediated transformation biological_process owl:Class GO:0009292 biolink:NamedThing genetic transfer In the absence of a sexual life cycle, the process involved in the introduction of genetic information to create a genetically different individual. tmpzr1t_l9r_go_relaxed.owl genetic exchange GO:0009292 should not be used for annotation of phage lysogeny (integration of the bacteriophage nucleic acid into the host bacterium's genome). biological_process owl:Class GO:0003323 biolink:NamedThing type B pancreatic cell development The process whose specific outcome is the progression of a type B pancreatic cell over time, from its formation to the mature structure. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic B cell development|pancreatic beta cell development dph 2009-11-02T08:20:11Z biological_process owl:Class GO:0016200 biolink:NamedThing synaptic target attraction The process in which a neuronal cell in a multicellular organism recognizes chemoattractant signals from, and grows towards, potential targets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050918 biolink:NamedThing positive chemotaxis The directed movement of a motile cell or organism towards a higher concentration of a chemical. tmpzr1t_l9r_go_relaxed.owl chemoattraction biological_process owl:Class GO:0047011 biolink:NamedThing 2-dehydropantolactone reductase (A-specific) activity Catalysis of the reaction: (R)-pantolactone + NADP+ = 2-dehydropantolactone + NADPH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NADP+. tmpzr1t_l9r_go_relaxed.owl (R)-pantolactone:NADP+ oxidoreductase (A-specific)|2-oxopantoyl lactone reductase|2-ketopantoyl lactone reductase activity|2-dehydropantoyl-lactone reductase (A-specific) activity|ketopantoyl lactone reductase activity MetaCyc:1.1.1.168-RXN|EC:1.1.1.168 molecular_function owl:Class GO:0036441 biolink:NamedThing 2-dehydropantolactone reductase activity Catalysis of the reaction: (R)-pantolactone + NADP+ = 2-dehydropantolactone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:18981|KEGG_REACTION:R03155 bf 2013-09-30T16:26:27Z molecular_function owl:Class GO:2000477 biolink:NamedThing regulation of metanephric glomerular visceral epithelial cell development Any process that modulates the frequency, rate or extent of metanephric glomerular visceral epithelial cell development. tmpzr1t_l9r_go_relaxed.owl regulation of metanephric podocyte development yaf 2011-03-09T05:16:40Z biological_process owl:Class GO:0060284 biolink:NamedThing regulation of cell development Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015495 biolink:NamedThing gamma-aminobutyric acid:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + H+(out) = gamma-aminobutyric acid(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid:hydrogen symporter activity|4-aminobutanoate:hydrogen symporter activity|gamma-aminobutyric acid permease activity|4-aminobutyrate:proton symporter activity|4-aminobutanoate:proton symporter activity|GABA:hydrogen symporter activity|4-aminobutyrate:hydrogen symporter activity|GABA:proton symporter activity Reactome:R-HSA-428625 See also the molecular function term 'neurotransmitter transporter activity ; GO:0005326'. GO:0015329|GO:0005331 molecular_function owl:Class GO:0015185 biolink:NamedThing gamma-aminobutyric acid transmembrane transporter activity Enables the transfer of gamma-aminobutyric acid from one side of a membrane to the other. Gamma-aminobutyric acid is 4-aminobutyrate (GABA). tmpzr1t_l9r_go_relaxed.owl GABA transporter activity|4-aminobutanoate transporter activity|betaine/GABA:sodium symporter activity|4-aminobutyrate transporter activity molecular_function owl:Class GO:0072147 biolink:NamedThing glomerular parietal epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a glomerular parietal epithelial cell. Glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. These cells may also give rise to podocytes. tmpzr1t_l9r_go_relaxed.owl Bowman's capsule cell fate commitment mah 2010-02-24T02:00:52Z biological_process owl:Class GO:0019636 biolink:NamedThing phosphonoacetate metabolic process The chemical reactions and pathways involving phosphonoacetate, C2H4PO5, a substance composed of an acetate and a phosphonic acid residue. tmpzr1t_l9r_go_relaxed.owl phosphonoacetate metabolism MetaCyc:P483-PWY biological_process owl:Class GO:0031582 biolink:NamedThing replication fork arrest at rDNA repeats A process that impedes the progress of the DNA replication fork at natural replication fork pausing sites within the eukaryotic rDNA repeat spacer. tmpzr1t_l9r_go_relaxed.owl replication fork blocking at rDNA repeats|replication fork arrest at ribosomal DNA repeats biological_process owl:Class GO:0043007 biolink:NamedThing maintenance of rDNA Any process involved in sustaining the fidelity and copy number of rDNA repeats. tmpzr1t_l9r_go_relaxed.owl rDNA maintenance|ribosomal DNA maintenance biological_process owl:Class GO:0032111 biolink:NamedThing activation of protein histidine kinase activity Any process that initiates the activity of an inactive protein histidine kinase. tmpzr1t_l9r_go_relaxed.owl protein histidine kinase activator biological_process owl:Class GO:1900651 biolink:NamedThing positive regulation of dehydroaustinol biosynthetic process Any process that activates or increases the frequency, rate or extent of dehydroaustinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of dehydroaustinol biosynthesis|activation of dehydroaustinol biosynthesis|activation of dehydroaustinol biosynthetic process|up regulation of dehydroaustinol formation|activation of dehydroaustinol formation|up regulation of dehydroaustinol synthesis|up-regulation of dehydroaustinol formation|positive regulation of dehydroaustinol synthesis|upregulation of dehydroaustinol formation|upregulation of dehydroaustinol biosynthesis|positive regulation of dehydroaustinol formation|up regulation of dehydroaustinol biosynthesis|up-regulation of dehydroaustinol biosynthesis|activation of dehydroaustinol synthesis|up regulation of dehydroaustinol anabolism|activation of dehydroaustinol anabolism|up-regulation of dehydroaustinol synthesis|upregulation of dehydroaustinol biosynthetic process|upregulation of dehydroaustinol synthesis|up-regulation of dehydroaustinol anabolism|upregulation of dehydroaustinol anabolism|up-regulation of dehydroaustinol biosynthetic process|up regulation of dehydroaustinol biosynthetic process|positive regulation of dehydroaustinol anabolism di 2012-05-22T04:06:30Z biological_process owl:Class GO:1900649 biolink:NamedThing regulation of dehydroaustinol biosynthetic process Any process that modulates the frequency, rate or extent of dehydroaustinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of dehydroaustinol biosynthesis|regulation of dehydroaustinol formation|regulation of dehydroaustinol synthesis|regulation of dehydroaustinol anabolism di 2012-05-22T04:06:03Z biological_process owl:Class GO:0046556 biolink:NamedThing alpha-L-arabinofuranosidase activity Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. tmpzr1t_l9r_go_relaxed.owl alpha-L-arabinofuranoside arabinofuranohydrolase activity|alpha-L-arabinofuranoside hydrolase activity|L-arabinosidase activity|alpha-L-arabinanase activity|polysaccharide alpha-L-arabinofuranosidase activity|arabinosidase activity|arabinofuranosidase activity|alpha-N-arabinofuranosidase activity|alpha-arabinofuranosidase activity|alpha-arabinosidase activity|alpha-L-arabinosidase activity EC:3.2.1.55|MetaCyc:3.2.1.55-RXN molecular_function owl:Class GO:0071606 biolink:NamedThing chemokine (C-C motif) ligand 4 production The appearance of chemokine (C-C motif) ligand 4 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl macrophage inflammatory protein production|MIP-1b production|CCL4 production mah 2010-02-05T04:16:42Z biological_process owl:Class GO:0032602 biolink:NamedThing chemokine production The appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria. tmpzr1t_l9r_go_relaxed.owl chemokine secretion|chemokine metabolic process|chemokine synthesis|chemokine anabolism|chemokine biosynthesis|chemokine formation|chemokine biosynthetic process 2009-12-18T11:26:20Z GO:0090195|GO:0050755|GO:0042033 biological_process owl:Class GO:0043662 biolink:NamedThing peribacteroid fluid The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003275 biolink:NamedThing apoptotic process involved in outflow tract morphogenesis Any apoptotic process that contributes to the shaping of the outflow tract. The outflow tract is the portion of the heart through which blood flows into the arteries. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in outflow tract morphogenesis dph 2009-10-20T09:30:01Z biological_process owl:Class GO:0006954 biolink:NamedThing inflammatory response The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages. tmpzr1t_l9r_go_relaxed.owl inflammation Wikipedia:Inflammation biological_process owl:Class GO:0006952 biolink:NamedThing defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. tmpzr1t_l9r_go_relaxed.owl defense/immunity protein activity|defence response|physiological defense response|antimicrobial peptide activity GO:0042829|GO:0002217 biological_process owl:Class GO:0090221 biolink:NamedThing mitotic spindle-templated microtubule nucleation The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates from within the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-13T10:42:37Z biological_process owl:Class GO:0007020 biolink:NamedThing microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Microtubule_nucleation biological_process owl:Class GO:1903660 biolink:NamedThing negative regulation of complement-dependent cytotoxicity Any process that stops, prevents or reduces the frequency, rate or extent of complement-dependent cytotoxicity. tmpzr1t_l9r_go_relaxed.owl down regulation of complement-dependent cytotoxicity|inhibition of complement-dependent cytotoxicity|down-regulation of complement-dependent cytotoxicity|downregulation of complement-dependent cytotoxicity jl 2014-11-25T15:04:02Z biological_process owl:Class GO:0031562 biolink:NamedThing hyphal tip polarisome Protein complex that has a role in determining cell polarity, found at the tip of a growing fungal hypha. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000133 biolink:NamedThing polarisome Protein complex that plays a role in determining cell polarity by directing the localized assembly of actin filaments at polarization sites; in Saccharomyces the polarisome includes Bni1p, Spa2p, Pea2p, and Bud6p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043291 biolink:NamedThing RAVE complex A multisubunit complex that in Saccharomyces is composed of three subunits, Rav1p, Rav2p and Skp1p. Acts transiently to catalyze assembly of cytoplasmic V1, with membrane embedded V0 to form the V-ATPase holoenzyme. tmpzr1t_l9r_go_relaxed.owl regulator of the (H+)-ATPase of the vacuolar and endosomal membranes cellular_component owl:Class GO:1905544 biolink:NamedThing L-methionine import across plasma membrane The directed movement of L-methionine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-methionine import into cell mah 2015-01-16T15:03:17Z GO:1903813 biological_process owl:Class GO:1903692 biolink:NamedThing methionine import across plasma membrane The directed movement of methionine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl methionine import|methionine import into cell jl 2012-08-15T14:54:38Z GO:0044690 biological_process owl:Class GO:0010766 biolink:NamedThing negative regulation of sodium ion transport Any process that decreases the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031305 biolink:NamedThing integral component of mitochondrial inner membrane The component of the mitochondrial inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to mitochondrial inner membrane cellular_component owl:Class GO:0031304 biolink:NamedThing intrinsic component of mitochondrial inner membrane The component of the mitochondrial inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to mitochondrial inner membrane cellular_component owl:Class GO:0010923 biolink:NamedThing negative regulation of phosphatase activity Any process that decreases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010921 biolink:NamedThing regulation of phosphatase activity Any process that modulates the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103059 biolink:NamedThing UDP-L-rhamnose:kaempferol 3-O-rhamnosyltransferase activity Catalysis of the reaction: kaempferol oxoanion + UDP-L-rhamnose <=> H+ + kaempferol-3-rhamnoside + UDP(3-). tmpzr1t_l9r_go_relaxed.owl RHEA:61164|MetaCyc:RXN1F-474 molecular_function owl:Class GO:0015811 biolink:NamedThing L-cystine transport The directed movement of L-cystine (also known as dicysteine) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036434 biolink:NamedThing nitronate monooxygenase (FMN-linked) activity Catalysis of the reaction: ethylnitronate + FMNH(2) + O(2) = acetaldehyde + FMN + H(2)O + H(+) + nitrite. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R00025|RHEA:26458 bf 2013-09-16T16:20:13Z molecular_function owl:Class GO:0070163 biolink:NamedThing regulation of adiponectin secretion Any process that modulates the frequency, rate or extent of the regulated release of adiponectin from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050708 biolink:NamedThing regulation of protein secretion Any process that modulates the frequency, rate or extent of the controlled release of a protein from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098556 biolink:NamedThing cytoplasmic side of rough endoplasmic reticulum membrane The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:15:44Z cellular_component owl:Class GO:0002064 biolink:NamedThing epithelial cell development The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019682 biolink:NamedThing glyceraldehyde-3-phosphate metabolic process The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde 3-phosphate metabolism|glyceraldehyde 3-phosphate metabolic process|glyceraldehyde-3-phosphate metabolism biological_process owl:Class GO:0042602 biolink:NamedThing riboflavin reductase (NADPH) activity Catalysis of the reaction: reduced riboflavin + NADP+ = riboflavin + NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl FMN reductase (NADPH) activity|NADPH-riboflavin oxidoreductase activity|riboflavin mononucleotide (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|flavin reductase activity|NADPH2 dehydrogenase (riboflavin)|NADPH-dependent FMN reductase activity|riboflavine mononucleotide reductase activity|NADPH-specific FMN reductase activity|NADPH-FMN reductase activity|reduced-riboflavin:NADP+ oxidoreductase activity|NADPH:riboflavin oxidoreductase activity|riboflavin mononucleotide reductase activity|NADPH-riboflavin reductase activity|NADPH dehydrogenase (riboflavin) activity|NADPH2:riboflavin oxidoreductase activity RHEA:19377|EC:1.5.1.30|EC:1.5.1.41|MetaCyc:NADPH-DEHYDROGENASE-FLAVIN-RXN|KEGG_REACTION:R05707 molecular_function owl:Class GO:0031788 biolink:NamedThing motilin receptor binding Binding to a motilin receptor. tmpzr1t_l9r_go_relaxed.owl motilin receptor ligand molecular_function owl:Class GO:0015650 biolink:NamedThing lactate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: lactate (out) + H+ (out) = lactate (in) + H+ (in). tmpzr1t_l9r_go_relaxed.owl lactate:proton porter activity|lactate:hydrogen symporter activity|lactate:hydrogen porter activity|lactate permease molecular_function owl:Class GO:0019489 biolink:NamedThing methylgallate metabolic process The chemical reactions and pathways involving methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid. tmpzr1t_l9r_go_relaxed.owl methylgallate metabolism biological_process owl:Class GO:0009712 biolink:NamedThing catechol-containing compound metabolic process The chemical reactions and pathways involving a compound containing a pyrocatechol (1,2-benzenediol) nucleus or substituent. tmpzr1t_l9r_go_relaxed.owl catechol metabolic process|catechol metabolism biological_process owl:Class GO:0002020 biolink:NamedThing protease binding Binding to a protease or a peptidase. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1297354 molecular_function owl:Class GO:0008094 biolink:NamedThing ATP-dependent activity, acting on DNA Catalytic activity that acts to modify DNA, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATPase, acting on DNA|ATPase activity, acting on DNA|DNA dependent ATPase activity|DNA-dependent adenosinetriphosphatase activity|adenosinetriphosphatase (DNA-dependent)|DNA-dependent ATPase activity https://github.com/geneontology/go-ontology/issues/21775|https://github.com/geneontology/go-ontology/issues/20876|https://github.com/geneontology/go-ontology/issues/21612 GO:0004011 molecular_function owl:Class GO:0072332 biolink:NamedThing intrinsic apoptotic signaling pathway by p53 class mediator A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|signal transduction by p53 class mediator resulting in induction of apoptosis mah 2010-11-03T01:47:56Z biological_process owl:Class GO:0097193 biolink:NamedThing intrinsic apoptotic signaling pathway A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway starts with reception of an intracellular signal (e.g. DNA damage, endoplasmic reticulum stress, oxidative stress etc.), and ends when the execution phase of apoptosis is triggered. The intrinsic apoptotic signaling pathway is crucially regulated by permeabilization of the mitochondrial outer membrane (MOMP). tmpzr1t_l9r_go_relaxed.owl induction of apoptosis by intracellular signals|intrinsic apoptotic signalling pathway|mitochondrial-mediated apoptotic pathway|intrinsic apoptosis|intrinsic apoptotic pathway The signals that start intrinsic apoptosis may come from extracellular sources (e.g. oxidative stress, UV exposure), but the reception of the signal and thus the signaling pathway start inside the cell (as a result of DNA damage, redox imbalance, etc.). Examples are ZPR9 (ZNF622) and ASK1 (MAP3K5) (UniProt symbols Q969S3 and Q99683) in PMID:21771788. A diagram of the intrinsic apoptotic pathway including examples of molecular players can be found in Figure 2 in PMID:21760595. pr 2011-11-23T09:40:50Z GO:0008629 biological_process owl:Class GO:0044147 biolink:NamedThing negative regulation of formation of structure involved in a symbiotic process Any process that stops, prevents, or reduces the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of development of symbiont involved in interaction with host|negative regulation of development of symbiont during interaction with host https://github.com/geneontology/go-ontology/issues/20305 This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont during interaction with host ; GO:0075340'. jl 2009-08-06T02:04:59Z biological_process owl:Class GO:0044145 biolink:NamedThing modulation of formation of structure involved in a symbiotic process Any process that modulates the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of development of symbiont involved in interaction with host|modulation of development of symbiont during interaction with host https://github.com/geneontology/go-ontology/issues/20305 This term partially replaces the obsolete term 'modulation of growth or development of symbiont during interaction with host ; GO:0075338'. See also 'modulation of growth of symbiont during interaction with host ; GO:0044144'. jl 2009-08-06T01:57:38Z biological_process owl:Class GO:0042211 biolink:NamedThing dimethylsilanediol catabolic process The aerobic chemical reactions and pathways resulting in the breakdown of dimethylsilanediol, the smallest member of the dialkylsilanediols. Dimethylsilanediol is the monomer of polydimethylsiloxane, a compound which can be found in a wide range of industrial and consumer products. tmpzr1t_l9r_go_relaxed.owl catabolism of DMSD|catabolic process of DMSD|dimethylsilanediol degradation|dimethylsilanediol breakdown|dimethylsilanediol catabolism|degradation of dimethylsilanediol biological_process owl:Class GO:0018946 biolink:NamedThing aerobic organosilicon metabolic process The chemical reactions and pathways involving organosilicons, organic compounds that contain silicon, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic organosilicone metabolism|aerobic organosilicon metabolism|aerobic organosilicone metabolic process UM-BBD_pathwayID:osi biological_process owl:Class GO:1905456 biolink:NamedThing regulation of lymphoid progenitor cell differentiation Any process that modulates the frequency, rate or extent of lymphoid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl rz 2016-09-16T12:32:40Z biological_process owl:Class GO:0015182 biolink:NamedThing L-asparagine transmembrane transporter activity Enables the transfer of L-asparagine from one side of a membrane to the other. L-asparagine is the L-enantiomer of alpha-aminosuccinamic acid. tmpzr1t_l9r_go_relaxed.owl asparagine/glutamine permease activity|L-asparagine transporter activity molecular_function owl:Class GO:0003288 biolink:NamedThing ventricular septum intermedium morphogenesis The developmental process in which a ventricular septum intermedium is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:58:48Z biological_process owl:Class GO:0060412 biolink:NamedThing ventricular septum morphogenesis The developmental process in which a ventricular septum is generated and organized. A ventricular septum is an anatomical structure that separates the lower chambers (ventricles) of the heart from one another. tmpzr1t_l9r_go_relaxed.owl interventricular septum morphogenesis biological_process owl:Class GO:1904899 biolink:NamedThing positive regulation of hepatic stellate cell proliferation Any process that activates or increases the frequency, rate or extent of hepatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of perisinusoidal cell proliferation|up regulation of hepatic perisinusoidal cell proliferation|up-regulation of perisinusoidal cell proliferation|up-regulation of hepatic stellate cell proliferation|activation of Ito cell proliferation|activation of hepatic perisinusoidal cell proliferation|upregulation of Ito cell proliferation|positive regulation of Ito cell proliferation|up regulation of Ito cell proliferation|upregulation of hepatic stellate cell proliferation|up-regulation of Ito cell proliferation|up regulation of hepatic stellate cell proliferation|upregulation of perisinusoidal cell proliferation|positive regulation of hepatic perisinusoidal cell proliferation|up regulation of perisinusoidal cell proliferation|activation of perisinusoidal cell proliferation|activation of hepatic stellate cell proliferation|up-regulation of hepatic perisinusoidal cell proliferation|upregulation of hepatic perisinusoidal cell proliferation sl 2016-01-14T15:57:13Z biological_process owl:Class GO:0050354 biolink:NamedThing triokinase activity Catalysis of the reaction: D-glyceraldehyde + ATP = D-glyceraldehyde 3-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl trio triose kinase (phosphorylating)|triose kinase activity|D-triokinase activity|ATP:D-glyceraldehyde 3-phosphotransferase activity Reactome:R-HSA-70349|EC:2.7.1.28|KEGG_REACTION:R01059|MetaCyc:TRIOKINASE-RXN|RHEA:13941 molecular_function owl:Class GO:1900646 biolink:NamedThing regulation of chanoclavine-I aldehyde biosynthetic process Any process that modulates the frequency, rate or extent of chanoclavine-I aldehyde biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of chanoclavine-I aldehyde biosynthesis|regulation of chanoclavine-I aldehyde synthesis|regulation of chanoclavine-I aldehyde formation|regulation of chanoclavine-I aldehyde anabolism di 2012-05-22T04:04:38Z biological_process owl:Class GO:1900822 biolink:NamedThing regulation of ergot alkaloid biosynthetic process Any process that modulates the frequency, rate or extent of ergot alkaloid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ergot alkaloid synthesis|regulation of ergot alkaloid anabolism|regulation of ergot alkaloid formation|regulation of ergot alkaloid biosynthesis di 2012-06-04T11:12:32Z biological_process owl:Class GO:1905815 biolink:NamedThing regulation of dorsal/ventral axon guidance Any process that modulates the frequency, rate or extent of dorsal/ventral axon guidance. tmpzr1t_l9r_go_relaxed.owl regulation of dorsoventral axon guidance|regulation of dorsal-ventral axon guidance|regulation of dorsal/ventral axon pathfinding hbye 2017-01-12T13:38:44Z biological_process owl:Class GO:1902667 biolink:NamedThing regulation of axon guidance Any process that modulates the frequency, rate or extent of axon guidance. tmpzr1t_l9r_go_relaxed.owl regulation of axon growth cone guidance|regulation of axon chemotaxis|regulation of axon pathfinding hjd 2014-01-31T18:50:10Z biological_process owl:Class GO:0003256 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T01:01:25Z biological_process owl:Class GO:0098985 biolink:NamedThing asymmetric, glutamatergic, excitatory synapse A neuron to neuron synapse with a postsynaptic density, that uses glutamate as a neurotransmitter and whose activity results in excitatory postsynaptic potentials. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032279 biolink:NamedThing asymmetric synapse A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory. tmpzr1t_l9r_go_relaxed.owl Gray's type I synapse cellular_component owl:Class GO:0051643 biolink:NamedThing endoplasmic reticulum localization Any process in which endoplasmic reticulum is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of ER localization|endoplasmic reticulum localisation|ER localization biological_process owl:Class GO:0051640 biolink:NamedThing organelle localization Any process in which an organelle is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl organelle localisation|establishment and maintenance of organelle localization biological_process owl:Class GO:0016054 biolink:NamedThing organic acid catabolic process The chemical reactions and pathways resulting in the breakdown of organic acids, any acidic compound containing carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl organic acid degradation|organic acid catabolism|organic acid breakdown biological_process owl:Class GO:1901770 biolink:NamedThing daunorubicin catabolic process The chemical reactions and pathways resulting in the breakdown of daunorubicin. tmpzr1t_l9r_go_relaxed.owl daunorubicin catabolism|daunorubicin degradation|daunorubicin breakdown yaf 2013-01-15T10:14:29Z biological_process owl:Class GO:1901662 biolink:NamedThing quinone catabolic process The chemical reactions and pathways resulting in the breakdown of quinone. tmpzr1t_l9r_go_relaxed.owl quinone cofactor catabolic process|quinone cofactor breakdown|quinone cofactor catabolism|quinone cofactor degradation|quinone degradation|quinone breakdown|quinone catabolism pr 2012-11-20T14:44:44Z GO:0042378 biological_process owl:Class GO:0060514 biolink:NamedThing prostate induction The close range interaction of the urogenital sinus mesenchyme and the urogenital sinus epithelium that causes the cells of the urogenital sinus epithelium to change their fates and specify the development of the prostate gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905332 biolink:NamedThing positive regulation of morphogenesis of an epithelium Any process that activates or increases the frequency, rate or extent of morphogenesis of an epithelium. tmpzr1t_l9r_go_relaxed.owl activation of epithelium morphogenesis|up regulation of morphogenesis of an epithelium|activation of morphogenesis of an epithelium|up regulation of epithelium morphogenesis|upregulation of morphogenesis of an epithelium|up-regulation of epithelium morphogenesis|positive regulation of epithelium morphogenesis|upregulation of epithelium morphogenesis|up-regulation of morphogenesis of an epithelium An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-07-22T07:14:05Z biological_process owl:Class GO:0042983 biolink:NamedThing amyloid precursor protein biosynthetic process The chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease. tmpzr1t_l9r_go_relaxed.owl amyloid precursor protein synthesis|APP biosynthesis|amyloid precursor protein biosynthesis|APP biosynthetic process|amyloid precursor protein formation|amyloid precursor protein anabolism biological_process owl:Class GO:0042982 biolink:NamedThing amyloid precursor protein metabolic process The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease. tmpzr1t_l9r_go_relaxed.owl APP metabolism|APP metabolic process|amyloid precursor protein metabolism biological_process owl:Class GO:0004474 biolink:NamedThing malate synthase activity Catalysis of the reaction: acetyl-CoA + glyoxylate + H(2)O = (S)-malate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl L-malate glyoxylate-lyase (CoA-acetylating) activity|malic-condensing enzyme activity|acetyl-CoA:glyoxylate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)|malate synthetase activity|glyoxylic transacetase activity|glyoxylate transacetase activity|malic synthetase activity|malate condensing enzyme activity|glyoxylate transacetylase activity EC:2.3.3.9|RHEA:18181|KEGG_REACTION:R00472|MetaCyc:MALSYN-RXN Note that this function was formerly EC:4.1.3.2. molecular_function owl:Class GO:0046642 biolink:NamedThing negative regulation of alpha-beta T cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of alpha-beta T cell proliferation|down regulation of alpha-beta T cell proliferation|inhibition of alpha-beta T cell proliferation|negative regulation of alpha-beta T lymphocyte proliferation|negative regulation of alpha-beta T-cell proliferation|negative regulation of alpha-beta T-lymphocyte proliferation|downregulation of alpha-beta T cell proliferation biological_process owl:Class GO:0007118 biolink:NamedThing budding cell apical bud growth Growth at the tip of a bud, in a cell that reproduces by budding. tmpzr1t_l9r_go_relaxed.owl apical bud growth biological_process owl:Class GO:0007117 biolink:NamedThing budding cell bud growth The process in which the bud portion of a cell that reproduces by budding irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. tmpzr1t_l9r_go_relaxed.owl bud growth biological_process owl:Class GO:1904635 biolink:NamedThing positive regulation of glomerular visceral epithelial cell apoptotic process Any process that activates or increases the frequency, rate or extent of glomerular visceral epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of glomerular visceral epithelial cell apoptotic process|up regulation of podocyte apoptotic process|upregulation of glomerular visceral epithelial cell apoptotic process|positive regulation of glomerular visceral epithelial cell apoptosis|activation of podocyte apoptotic process|up-regulation of glomerular podocyte apoptosis|up regulation of glomerular visceral epithelial cell apoptotic process|up-regulation of glomerular podocyte apoptotic process|positive regulation of glomerular podocyte apoptosis|up-regulation of glomerular visceral epithelial cell apoptosis|upregulation of glomerular podocyte apoptotic process|up regulation of podocyte apoptosis|activation of glomerular podocyte apoptosis|activation of glomerular podocyte apoptotic process|activation of podocyte apoptosis|positive regulation of podocyte apoptosis|up-regulation of podocyte apoptotic process|upregulation of podocyte apoptotic process|up regulation of glomerular podocyte apoptosis|up regulation of glomerular podocyte apoptotic process|activation of glomerular visceral epithelial cell apoptosis|upregulation of podocyte apoptosis|up regulation of glomerular visceral epithelial cell apoptosis|positive regulation of glomerular podocyte apoptotic process|activation of glomerular visceral epithelial cell apoptotic process|up-regulation of podocyte apoptosis|upregulation of glomerular podocyte apoptosis|positive regulation of podocyte apoptotic process|upregulation of glomerular visceral epithelial cell apoptosis sl 2015-08-28T14:14:56Z biological_process owl:Class GO:0042675 biolink:NamedThing compound eye cone cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a compound eye cone cell, a cone-shaped cell, that focuses light in a compound eye. tmpzr1t_l9r_go_relaxed.owl GO:0042674 biological_process owl:Class GO:0034943 biolink:NamedThing trans-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity Catalysis of the reaction: trans-2-methyl-5-isopropylhexa-2,5-dienoic acid + ATP + CoASH = trans-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA + AMP + PPi. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0989 molecular_function owl:Class GO:0047844 biolink:NamedThing deoxycytidine deaminase activity Catalysis of the reaction: deoxycytidine + H2O = deoxyuridine + NH3. tmpzr1t_l9r_go_relaxed.owl deoxycytidine aminohydrolase activity RHEA:13433|MetaCyc:CYTIDEAM-RXN|EC:3.5.4.14 molecular_function owl:Class GO:0002816 biolink:NamedThing regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031309 biolink:NamedThing integral component of nuclear outer membrane The component of the nuclear outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to nuclear outer membrane cellular_component owl:Class GO:2000310 biolink:NamedThing regulation of NMDA receptor activity Any process that modulates the frequency, rate or extent of N-methyl-D-aspartate selective glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of N-methyl-D-aspartate selective glutamate receptor activity bf 2011-01-18T10:06:37Z biological_process owl:Class GO:0017089 biolink:NamedThing glycolipid transfer activity Removes a glycolipid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. A glycolipid is a compound usually containing 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid. tmpzr1t_l9r_go_relaxed.owl glycolipid carrier activity|intermembrane glycolipid transfer activity|glycolipid transporter activity|intermembrane glycolipid transporter activity Reactome:R-HSA-5340320|Reactome:R-HSA-9697077 molecular_function owl:Class GO:0007565 biolink:NamedThing female pregnancy The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth. tmpzr1t_l9r_go_relaxed.owl carrying of young|gestation Wikipedia:Gestation biological_process owl:Class GO:0010431 biolink:NamedThing seed maturation A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042043 biolink:NamedThing neurexin family protein binding Binding to a neurexin, a synaptic cell surface protein related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals. tmpzr1t_l9r_go_relaxed.owl neuroligin GO:0019963 molecular_function owl:Class GO:0099518 biolink:NamedThing vesicle cytoskeletal trafficking The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl cytoskeletal fiber-based vesicle localization|vesicle cytoskeletal transport biological_process owl:Class GO:0030705 biolink:NamedThing cytoskeleton-dependent intracellular transport The directed movement of substances along cytoskeletal fibers such as microfilaments or microtubules within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905017 biolink:NamedThing positive regulation of isoleucine-tRNA ligase activity Any process that activates or increases the frequency, rate or extent of isoleucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of isoleucyl-transfer RNA synthetase activity|activation of isoleucyl-tRNA synthetase activity|up regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|activation of isoleucine-tRNA synthetase activity|up regulation of isoleucyl-transfer RNA synthetase activity|upregulation of L-isoleucine:tRNAIle ligase (AMP-forming)|activation of isoleucine-transfer RNA ligase activity|positive regulation of isoleucine-transfer RNA ligase activity|positive regulation of isoleucyl-tRNA synthetase activity|upregulation of isoleucyl-transfer ribonucleate synthetase activity|up-regulation of isoleucine-transfer RNA ligase activity|up regulation of isoleucyl-transfer ribonucleate synthetase activity|positive regulation of isoleucyl-transfer RNA synthetase activity|up-regulation of isoleucine-tRNA ligase activity|up regulation of isoleucine-transfer RNA ligase activity|positive regulation of isoleucine-tRNA synthetase activity|up-regulation of isoleucyl-tRNA synthetase activity|up regulation of isoleucine translase activity|upregulation of isoleucyl-transfer RNA synthetase activity|up-regulation of isoleucyl-transfer ribonucleate synthetase activity|up-regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|up regulation of isoleucine-tRNA ligase activity|activation of isoleucyl-transfer ribonucleate synthetase activity|up-regulation of isoleucine-tRNA synthetase activity|positive regulation of isoleucine translase activity|up regulation of isoleucine-tRNA synthetase activity|positive regulation of isoleucyl-transfer ribonucleate synthetase activity|upregulation of isoleucyl-tRNA synthetase activity|activation of isoleucine-tRNA ligase activity|upregulation of isoleucine translase activity|upregulation of isoleucine-tRNA ligase activity|positive regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|activation of isoleucyl-transfer RNA synthetase activity|upregulation of isoleucine-tRNA synthetase activity|activation of isoleucine translase activity|up-regulation of isoleucine translase activity|activation of L-isoleucine:tRNAIle ligase (AMP-forming)|up regulation of isoleucyl-tRNA synthetase activity|upregulation of isoleucine-transfer RNA ligase activity sl 2016-03-03T19:01:06Z biological_process owl:Class GO:1905015 biolink:NamedThing regulation of isoleucine-tRNA ligase activity Any process that modulates the frequency, rate or extent of isoleucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of isoleucine translase activity|regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|regulation of isoleucine-transfer RNA ligase activity|regulation of isoleucyl-tRNA synthetase activity|regulation of isoleucyl-transfer RNA synthetase activity|regulation of isoleucine-tRNA synthetase activity|regulation of isoleucyl-transfer ribonucleate synthetase activity sl 2016-03-03T19:00:48Z biological_process owl:Class GO:0019528 biolink:NamedThing D-arabitol catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of D-arabitol to form xylulose 5-phosphate. D-arabitol is converted into D-xylulose, which is then phosphorylated to form D-xylulose-5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-arabitol breakdown to xylulose 5-phosphate|D-arabitol degradation to xylulose 5-phosphate|D-arabitol utilization|D-arabitol degradation MetaCyc:DARABITOLUTIL-PWY biological_process owl:Class GO:0051159 biolink:NamedThing D-arabitol catabolic process The chemical reactions and pathways resulting in the breakdown of D-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. The D enantiomer is present in lichens and mushrooms. tmpzr1t_l9r_go_relaxed.owl D-arabitol catabolism|D-arabitol breakdown|D-arabitol degradation biological_process owl:Class GO:0019645 biolink:NamedThing anaerobic electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors other than oxygen to generate a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022904 biolink:NamedThing respiratory electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl dihydropteridine reduction|dihydrolipoylprotein reduction|dihydrobiopterin reduction|other pathways of electron transport|protein-disulfide reduction|electron transfer|dihydrolipoamide reduction|oxidized glutathione reduction|6-phosphofructokinase reduction Wikipedia:Electron_transfer biological_process owl:Class GO:0033303 biolink:NamedThing quercetin O-glucoside biosynthetic process The chemical reactions and pathways leading to the formation of O-glucosylated derivatives of quercetin. tmpzr1t_l9r_go_relaxed.owl quercetin O-glucoside formation|quercetin O-glucoside biosynthesis|quercetin O-glucoside anabolism|quercetin O-glucoside synthesit MetaCyc:PWY-5321 biological_process owl:Class GO:0033302 biolink:NamedThing quercetin O-glucoside metabolic process The chemical reactions and pathways involving O-glucosylated derivatives of quercetin. tmpzr1t_l9r_go_relaxed.owl quercetin O-glucoside metabolism biological_process owl:Class GO:0002840 biolink:NamedThing regulation of T cell mediated immune response to tumor cell Any process that modulates the frequency, rate, or extent of a T cell mediated immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl regulation of T-cell mediated immune response to tumor cell|regulation of T cell mediated immune response to tumour cell|regulation of T-lymphocyte mediated immune response to tumor cell|regulation of T lymphocyte mediated immune response to tumor cell biological_process owl:Class GO:0002837 biolink:NamedThing regulation of immune response to tumor cell Any process that modulates the frequency, rate, or extent of an immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl regulation of immune response to tumour cell biological_process owl:Class GO:0006004 biolink:NamedThing fucose metabolic process The chemical reactions and pathways involving fucose, or 6-deoxygalactose, which has two enantiomers, D-fucose and L-fucose. tmpzr1t_l9r_go_relaxed.owl fucose metabolism biological_process owl:Class GO:0000164 biolink:NamedThing protein phosphatase type 1 complex A protein complex that possesses magnesium-dependent protein serine/threonine phosphatase (AMD phosphatase) activity, and consists of a catalytic subunit and one or more regulatory subunits that dictates the phosphatase's substrate specificity, function, and activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008287 biolink:NamedThing protein serine/threonine phosphatase complex A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034702 biolink:NamedThing ion channel complex A protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031030 biolink:NamedThing negative regulation of septation initiation signaling Any process that stops, prevents, or reduces the frequency, rate or extent of septation initiation signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of septation initiation signaling cascade|downregulation of septation initiation signaling|inhibition of septation initiation signaling|down regulation of septation initiation signaling|down-regulation of septation initiation signaling|negative regulation of septation initiation signalling|negative regulation of septation initiation network biological_process owl:Class GO:0031029 biolink:NamedThing regulation of septation initiation signaling Any process that modulates the frequency, rate or extent of septation initiation signaling. tmpzr1t_l9r_go_relaxed.owl regulation of septation initiation network|regulation of septation initiation signalling|regulation of septation initiation signaling cascade biological_process owl:Class GO:0061902 biolink:NamedThing negative regulation of 1-phosphatidylinositol-3-kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of 1-phosphatidylinositol-3-kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-22T19:51:34Z biological_process owl:Class GO:0050603 biolink:NamedThing thiophene-2-carbonyl-CoA monooxygenase activity Catalysis of the reaction: AH(2) + O(2) + thiophene-2-carbonyl-CoA = 5-hydroxythiophene-2-carbonyl-CoA + A + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl thiophene-2-carbonyl-CoA, hydrogen-donor:oxygen oxidoreductase activity|thiophene-2-carboxyl-CoA monooxygenase activity|thiophene-2-carboxyl-CoA hydroxylase activity|thiophene-2-carboxyl-CoA dehydrogenase activity UM-BBD_reactionID:r1235|RHEA:18929|MetaCyc:1.14.99.35-RXN|KEGG_REACTION:R05742|EC:1.14.99.35 molecular_function owl:Class GO:1900622 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling Calcium-mediated signaling that results in positive regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl calcineurin-mediated activation of transcription|upregulation of transcription from RNA polymerase II promoter by calcium-mediated signaling|up regulation of global transcription from RNA polymerase II promoter by calcium-mediated signaling|calcineurin-dependent transcription activation|positive regulation of transcription from Pol II promoter by calcium-mediated signaling|stimulation of transcription from RNA polymerase II promoter by calcium-mediated signaling|upregulation of global transcription from RNA polymerase II promoter by calcium-mediated signaling|calcineurin-dependent transcriptional induction|up-regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling|positive regulation of global transcription from Pol II promoter by calcium-mediated signaling|up regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling|up-regulation of global transcription from RNA polymerase II promoter by calcium-mediated signaling|stimulation of global transcription from RNA polymerase II promoter by calcium-mediated signaling|activation of transcription from RNA polymerase II promoter by calcium-mediated signaling|activation of global transcription from RNA polymerase II promoter by calcium-mediated signaling|positive regulation of transcription from RNA polymerase II promoter, global by calcium-mediated signaling|positive regulation of gene-specific transcription from RNA polymerase II promoter by calcium-mediated signaling bf 2012-05-18T01:01:04Z biological_process owl:Class GO:0019722 biolink:NamedThing calcium-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. tmpzr1t_l9r_go_relaxed.owl calcium ion signaling|calcium signaling|calcium signalling|calcium-mediated signalling Wikipedia:Calcium_signaling biological_process owl:Class GO:2000051 biolink:NamedThing negative regulation of non-canonical Wnt signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of non-canonical Wnt receptor signalling pathway|negative regulation of non-canonical Wnt-activated signaling pathway|negative regulation of beta-catenin-independent Wnt receptor signaling pathway|negative regulation of non-canonical Wnt receptor signaling pathway jl 2010-08-20T01:04:20Z biological_process owl:Class GO:0030178 biolink:NamedThing negative regulation of Wnt signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of Wnt receptor signaling pathway|negative regulation of frizzled signalling pathway|negative regulation of Wnt receptor signalling pathway|down regulation of frizzled signaling pathway|down regulation of Wnt receptor signaling pathway|negative regulation of Wnt-activated signaling pathway|negative regulation of frizzled signaling pathway|downregulation of frizzled signaling pathway|down-regulation of Wnt receptor signaling pathway|down-regulation of frizzled signaling pathway|inhibition of frizzled signaling pathway|downregulation of Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway GO:0045810 biological_process owl:Class GO:1900292 biolink:NamedThing negative regulation of galactotriose transport Any process that stops, prevents or reduces the frequency, rate or extent of galactotriose transport. tmpzr1t_l9r_go_relaxed.owl inhibition of galactotriose transport|downregulation of galactotriose transport|down regulation of galactotriose transport|down-regulation of galactotriose transport tt 2012-04-05T07:26:08Z biological_process owl:Class GO:0097700 biolink:NamedThing vascular endothelial cell response to laminar fluid shear stress Any response to laminar fluid shear stress in a vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl blood vessel endothelial cell response to laminar fluid shear stress pr 2016-01-27T12:42:01Z biological_process owl:Class GO:0097699 biolink:NamedThing vascular endothelial cell response to fluid shear stress Any response to fluid shear stress in a vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl blood vessel endothelial cell response to fluid shear stress pr 2016-01-27T12:37:32Z biological_process owl:Class GO:0044393 biolink:NamedThing microspike A dynamic, actin-rich projection extending from the surface of a migrating animal cell. tmpzr1t_l9r_go_relaxed.owl Although in some literature 'microspike' and 'filopodium' are used synonymously, in GO microspike refers to a cell projection that is distinct from a filopodium. See also 'filopodium ; GO:0030175'. bf 2011-12-06T01:31:16Z cellular_component owl:Class GO:0015821 biolink:NamedThing methionine transport The directed movement of methionine, 2-amino-4-(methylthio)butanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-methionine transport biological_process owl:Class GO:0043242 biolink:NamedThing negative regulation of protein-containing complex disassembly Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl down regulation of protein complex disassembly|down-regulation of protein complex disassembly|downregulation of protein complex disassembly|inhibition of protein complex disassembly|negative regulation of protein complex disassembly biological_process owl:Class GO:0043244 biolink:NamedThing regulation of protein-containing complex disassembly Any process that modulates the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl regulation of protein complex disassembly biological_process owl:Class GO:0016320 biolink:NamedThing endoplasmic reticulum membrane fusion The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl ER membrane fusion biological_process owl:Class GO:0090174 biolink:NamedThing organelle membrane fusion The joining of two lipid bilayers to form a single organelle membrane. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-11T11:44:58Z biological_process owl:Class GO:0010059 biolink:NamedThing positive regulation of atrichoblast fate specification Any process that induces or promotes atrichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl stimulation of atrichoblast fate|up-regulation of atrichoblast fate|activation of atrichoblast fate|up regulation of atrichoblast fate|upregulation of atrichoblast fate biological_process owl:Class GO:0061764 biolink:NamedThing late endosome to lysosome transport via multivesicular body sorting pathway The directed movement of substances from late endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome. tmpzr1t_l9r_go_relaxed.owl dph 2016-04-19T09:29:57Z biological_process owl:Class GO:0032510 biolink:NamedThing endosome to lysosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome. tmpzr1t_l9r_go_relaxed.owl endosome to lysosome transport via MVB sorting pathway biological_process owl:Class GO:0048691 biolink:NamedThing positive regulation of axon extension involved in regeneration Any process that activates, maintains or increases the rate of axon extension involved in regeneration. tmpzr1t_l9r_go_relaxed.owl activation of axon extension involved in regeneration|up-regulation of axon extension involved in regeneration|stimulation of axon extension involved in regeneration|upregulation of axon extension involved in regeneration|up regulation of axon extension involved in regeneration biological_process owl:Class GO:0050968 biolink:NamedThing detection of chemical stimulus involved in sensory perception of pain The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of pain, sensory detection of chemical stimulus|sensory detection of chemical stimulus during perception of pain|perception of pain, detection of chemical stimulus|perception of pain, sensory transduction of chemical stimulus|sensory transduction of chemical stimulus during perception of pain|chemical nociception biological_process owl:Class GO:0021839 biolink:NamedThing interneuron-substratum interaction involved in interneuron migration from the subpallium to the cortex The process in which migrating interneurons interact with an external substratum as a component of migration from the subpallium to the cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036489 biolink:NamedThing neuromelanin biosynthetic process The chemical reactions and pathways resulting in the formation of neuromelanin. Neuromelanin is a polymer of 5,6-dihydroxyindole monomers. tmpzr1t_l9r_go_relaxed.owl neuromelanin formation|neuromelanin synthesis|neuromelanin anabolism|neuromelanin biosynthesis bf 2014-11-06T13:21:46Z biological_process owl:Class GO:1901535 biolink:NamedThing regulation of DNA demethylation Any process that modulates the frequency, rate or extent of DNA demethylation. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-24T13:52:50Z biological_process owl:Class GO:0051052 biolink:NamedThing regulation of DNA metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA. tmpzr1t_l9r_go_relaxed.owl regulation of DNA metabolism biological_process owl:Class GO:0004838 biolink:NamedThing L-tyrosine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine 2-oxoglutarate aminotransferase activity|glutamic-hydroxyphenylpyruvic transaminase activity|tyrosine-alpha-ketoglutarate transaminase activity|tyrosine transaminase activity|L-tyrosine aminotransferase activity|tyrosine-alpha-ketoglutarate aminotransferase activity|phenylpyruvate transaminase activity|glutamic phenylpyruvic aminotransferase activity|phenylalanine transaminase activity|phenylalanine-alpha-ketoglutarate transaminase activity|TyrAT activity|phenylpyruvic acid transaminase activity|tyrosine aminotransferase activity|phenylalanine aminotransferase activity|tyrosine-2-ketoglutarate aminotransferase activity RHEA:15093|EC:2.6.1.5|Reactome:R-HSA-71155|MetaCyc:TYROSINE-AMINOTRANSFERASE-RXN|Reactome:R-HSA-517444 molecular_function owl:Class GO:0070547 biolink:NamedThing L-tyrosine aminotransferase activity Catalysis of the transfer of an amino group from L-tyrosine to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061883 biolink:NamedThing clathrin-dependent endocytosis involved in vitellogenesis A clathrin-mediated endocytosis process whereby yolk proteins are internalized and trafficked through the endocytic pathway for yolk deposition. tmpzr1t_l9r_go_relaxed.owl clathrin-dependent endocytosis involved in yolk formation dph 2017-05-30T14:41:21Z biological_process owl:Class GO:1900941 biolink:NamedThing regulation of (Z)-nonadeca-1,14-diene biosynthetic process Any process that modulates the frequency, rate or extent of (Z)-nonadeca-1,14-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of (Z)-nonadeca-1,14-diene formation|regulation of (Z)-nonadeca-1,14-diene biosynthesis|regulation of (Z)-nonadeca-1,14-diene anabolism|regulation of (Z)-nonadeca-1,14-diene synthesis tt 2012-06-14T03:17:32Z biological_process owl:Class GO:0060679 biolink:NamedThing trifid subdivision of terminal units involved in ureteric bud branching The process in which a ureteric bud splits into three units at its end. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T02:37:42Z biological_process owl:Class GO:0032565 biolink:NamedThing dGMP binding Binding to dGMP, deoxyguanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903490 biolink:NamedThing positive regulation of mitotic cytokinesis Any process that activates or increases the frequency, rate or extent of mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl upregulation of cytokinesis after mitosis|up regulation of cytokinesis after mitosis|up-regulation of cytokinesis after mitosis|activation of cytokinesis after mitosis|positive regulation of cytokinesis after mitosis|activation of mitotic cytokinesis|up regulation of mitotic cytokinesis|up-regulation of mitotic cytokinesis|upregulation of mitotic cytokinesis al 2014-09-25T09:00:35Z biological_process owl:Class GO:0042342 biolink:NamedThing cyanogenic glycoside catabolic process The chemical reactions and pathways resulting in the breakdown of cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits. tmpzr1t_l9r_go_relaxed.owl cyanogenic glycoside catabolism|cyanogenic glycoside degradation|cyanogenic glycoside breakdown biological_process owl:Class GO:0050899 biolink:NamedThing nitrile catabolic process The chemical reactions and pathways resulting in the breakdown of a nitrile, an organic compound containing trivalent nitrogen attached to one carbon atom. tmpzr1t_l9r_go_relaxed.owl nitrile catabolism|nitrile degradation|nitrile breakdown biological_process owl:Class GO:1901542 biolink:NamedThing regulation of ent-pimara-8(14),15-diene biosynthetic process Any process that modulates the frequency, rate or extent of ent-pimara-8(14),15-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ent-pimara-8(14),15-diene synthesis|regulation of ent-pimara-8(14),15-diene biosynthesis|regulation of ent-pimara-8(14),15-diene anabolism|regulation of ent-pimara-8(14),15-diene formation di 2012-10-26T11:37:54Z biological_process owl:Class GO:0070618 biolink:NamedThing Grb2-Sos complex A protein complex that contains Grb2 and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Grb2-mSos1 complex mah 2009-04-29T04:19:02Z cellular_component owl:Class GO:0071964 biolink:NamedThing establishment of cell polarity regulating cell shape Any cellular process that results in the specification or formation of a polarized intracellular organization or cell growth pattern that regulates the shape of a cell. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-22T03:10:08Z biological_process owl:Class GO:0030010 biolink:NamedThing establishment of cell polarity The specification and formation of anisotropic intracellular organization or cell growth patterns. tmpzr1t_l9r_go_relaxed.owl cell polarization|bud site selection/establishment of cell polarity GO:0000283|GO:0030468 biological_process owl:Class GO:0097277 biolink:NamedThing cellular urea homeostasis Any biological process involved in the maintenance of an internal steady state of urea at the level of the cell. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-22T02:57:08Z biological_process owl:Class GO:0097274 biolink:NamedThing urea homeostasis Any biological process involved in the maintenance of an internal steady state of urea. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-22T02:53:39Z biological_process owl:Class GO:0001848 biolink:NamedThing complement binding Binding to a component or product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl Note that the complement cascade includes all of the components involved in the classical complement pathway, the alternative complement pathway, and the lectin complement pathway, as well as the common components of all three pathways. molecular_function owl:Class GO:1901494 biolink:NamedThing regulation of cysteine metabolic process Any process that modulates the frequency, rate or extent of cysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cysteine metabolism vw 2012-10-16T14:28:42Z biological_process owl:Class GO:0006521 biolink:NamedThing regulation of cellular amino acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids. tmpzr1t_l9r_go_relaxed.owl regulation of amino acid metabolism biological_process owl:Class GO:0008069 biolink:NamedThing dorsal/ventral axis specification, ovarian follicular epithelium Polarization of the ovarian follicle cells along the dorsal/ventral axis. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl dorsal-ventral axis specification, ovarian follicular epithelium|dorsal/ventral axis determination, ovarian follicular epithelium|dorsoventral axis specification, ovarian follicular epithelium|dorsal/ventral axis determination, follicular epithelium biological_process owl:Class GO:0016334 biolink:NamedThing establishment or maintenance of polarity of follicular epithelium Any cellular process that results in the specification, formation or maintenance of a polarized follicular epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905240 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation Any process that stops, prevents or reduces the frequency, rate or extent of canonical Wnt signaling pathway involved in osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of canonical Wnt signaling pathway involved in osteoblast differentiation|down-regulation of canonical Wnt signaling pathway involved in osteoblast differentiation|negative regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|down regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|down-regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|negative regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|downregulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|down-regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|inhibition of canonical Wnt signaling pathway involved in osteoblast differentiation|down regulation of canonical Wnt signaling pathway involved in osteoblast differentiation|down regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|negative regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|downregulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|downregulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|inhibition of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|down-regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|inhibition of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|inhibition of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|down regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation rph 2016-06-08T10:26:41Z biological_process owl:Class GO:2000990 biolink:NamedThing positive regulation of hemicellulose catabolic process Any process that activates or increases the frequency, rate or extent of hemicellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of hemicellulose catabolism tt 2011-08-08T03:08:23Z biological_process owl:Class GO:0010676 biolink:NamedThing positive regulation of cellular carbohydrate metabolic process Any process that increases the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052053 biolink:NamedThing negative regulation by symbiont of host catalytic activity Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of host enzyme activity. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host enzyme activity|inhibition of host enzyme activity|downregulation by symbiont of host enzyme activity|down-regulation by symbiont of host enzyme activity|down regulation by symbiont of host enzyme activity|inhibition by symbiont of host enzyme activity|negative regulation by symbiont of host molecular function GO:0052056 biological_process owl:Class GO:0008476 biolink:NamedThing protein-tyrosine sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + protein tyrosine = adenosine 3',5'-bisphosphate + protein tyrosine-O-sulfate. tmpzr1t_l9r_go_relaxed.owl protein-tyrosine sulphotransferase activity|3'-phosphoadenylyl-sulfate:protein-tyrosine O-sulfotransferase activity|tyrosylprotein sulfotransferase activity MetaCyc:PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RHEA:16801|Reactome:R-HSA-9668148|EC:2.8.2.20|Reactome:R-HSA-8954262|Reactome:R-HSA-9668023 molecular_function owl:Class GO:0048674 biolink:NamedThing collateral sprouting of injured axon The process resulting in reformation of a growth cone by the tip of an injured axon, or in collateral sprouting of the axon. Collateral sprouting is the process in which outgrowths develop from the shafts of existing axons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048682 biolink:NamedThing sprouting of injured axon The process involved in sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043442 biolink:NamedThing acetoacetic acid catabolic process The chemical reactions and pathways resulting in the breakdown of acetoacetic acid, a beta-keto acid of the keto acid group, empirical formula is C4H6O3 or CH3COCH2COOH. tmpzr1t_l9r_go_relaxed.owl acetoacetic acid catabolism|acetoacetic acid breakdown|acetoacetic acid degradation biological_process owl:Class GO:0043438 biolink:NamedThing acetoacetic acid metabolic process The chemical reactions and pathways involving acetoacetic acid, 3-oxobutanoic acid; the empirical formula is C4H6O3 or CH3COCH2COOH. tmpzr1t_l9r_go_relaxed.owl 3-oxobutanoic acid metabolism|beta ketobutyric acid metabolic process|beta-ketobutyric acid metabolism|diacetic acid metabolic process|acetoacetate metabolism|acetoacetic acid metabolism|3-oxobutanoic acid metabolic process|acetoacetate metabolic process|beta-ketobutyric acid metabolic process|3-oxobutanoate metabolic process|diacetic acid metabolism|3-oxobutanoate metabolism|beta ketobutyric acid metabolism biological_process owl:Class GO:0004148 biolink:NamedThing dihydrolipoyl dehydrogenase activity Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+. tmpzr1t_l9r_go_relaxed.owl lipoic acid dehydrogenase activity|dihydrolipoamide:NAD+ oxidoreductase|dihydrolipoic dehydrogenase activity|diaphorase activity|dehydrolipoate dehydrogenase activity|lipoamide reductase activity|L-protein activity|lipoamide dehydrogenase (NADH) activity|lipoamide reductase (NADH) activity|glycine-cleavage system L-protein activity|protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase|lipoate dehydrogenase activity|E3 component of alpha-ketoacid dehydrogenase complexes activity|lipoamide oxidoreductase (NADH) activity|protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase|dihydrolipoamide dehydrogenase activity|dihydrolipoamide reduction|LDP-Val activity|LDP-Glc activity|lipoyl dehydrogenase activity|dihydrolipoylprotein reduction|dihydrothioctic dehydrogenase activity RHEA:15045|MetaCyc:DIHYDLIPOXN-RXN|EC:1.8.1.4|Reactome:R-HSA-5694018|Reactome:R-HSA-1222412 molecular_function owl:Class GO:0072550 biolink:NamedThing triferuloylspermidine meta-hydroxylase activity Catalysis of the reaction: triferuloyl spermidine + NADPH + O2 = diferuloyl mono-(hydroxyferuloyl) spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl triferuloyl spermidine meta-hydroxylase activity MetaCyc:RXN-11262 mah 2011-01-25T02:58:56Z molecular_function owl:Class GO:1903689 biolink:NamedThing regulation of wound healing, spreading of epidermal cells Any process that modulates the frequency, rate or extent of wound healing, spreading of epidermal cells. tmpzr1t_l9r_go_relaxed.owl als 2014-12-01T15:54:18Z biological_process owl:Class GO:1900944 biolink:NamedThing regulation of isoprene metabolic process Any process that modulates the frequency, rate or extent of isoprene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of 2-methyl-1,3-butadiene metabolic process|regulation of isoprene metabolism|regulation of hemiterpene metabolic process|regulation of hemiterpene metabolism|regulation of 2-methyl-1,3-butadiene metabolism tt 2012-06-14T03:19:13Z biological_process owl:Class GO:0019747 biolink:NamedThing regulation of isoprenoid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving isoprenoids. tmpzr1t_l9r_go_relaxed.owl regulation of isoprenoid metabolism biological_process owl:Class GO:0032960 biolink:NamedThing regulation of inositol trisphosphate biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate. tmpzr1t_l9r_go_relaxed.owl regulation of inositol trisphosphate anabolism|regulation of IP3 biosynthetic process|regulation of IP3 biosynthesis|regulation of inositol trisphosphate synthesis|regulation of inositol trisphosphate biosynthesis|regulation of myo-inositol trisphosphate biosynthetic process|regulation of myo-inositol trisphosphate biosynthesis|regulation of inositol trisphosphate formation biological_process owl:Class GO:2000735 biolink:NamedThing positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation Any process that activates or increases the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation|positive regulation of GDNF receptor signaling pathway of ureteric bud formation|positive regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|positive regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|positive regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation yaf 2011-06-13T11:14:46Z biological_process owl:Class GO:2000996 biolink:NamedThing positive regulation of mannan catabolic process Any process that activates or increases the frequency, rate or extent of mannan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of mannan degradation|positive regulation of mannan breakdown|positive regulation of mannan catabolism tt 2011-08-08T03:19:18Z biological_process owl:Class GO:0042288 biolink:NamedThing MHC class I protein binding Binding to a major histocompatibility complex class I molecule; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex class I ligand|major histocompatibility complex class I binding|alpha-beta T cell receptor activity|T cell receptor activity|gamma-delta T cell receptor activity Note that this term does not include binding to the antigen peptide bound to the MHC protein. Consider also annotating to the molecular function term 'peptide antigen binding ; GO:0042605' or one of its children. molecular_function owl:Class GO:0042287 biolink:NamedThing MHC protein binding Binding to a major histocompatibility complex molecule; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex binding|major histocompatibility complex ligand Note that this term does not include binding to the antigen peptide bound to the MHC protein, for this also annotate to 'peptide antigen binding ; GO:0042605' or one of its children. molecular_function owl:Class GO:0051004 biolink:NamedThing regulation of lipoprotein lipase activity Any process that modulates the activity of the enzyme lipoprotein lipase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060191 biolink:NamedThing regulation of lipase activity Any process that modulates the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000538 biolink:NamedThing positive regulation of B cell chemotaxis Any process that activates or increases the frequency, rate or extent of B cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-29T09:49:33Z biological_process owl:Class GO:2000537 biolink:NamedThing regulation of B cell chemotaxis Any process that modulates the frequency, rate or extent of B cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-29T09:49:25Z biological_process owl:Class GO:0043446 biolink:NamedThing cellular alkane metabolic process The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl alkane metabolism biological_process owl:Class GO:0018792 biolink:NamedThing bis(4-chlorophenyl)acetate decarboxylase activity Catalysis of the reaction: bis(4-chlorophenyl)acetate + H+ = CO2 + bis(4-chlorophenyl)methane. Bis(4-chlorophenyl)acetate is also known as DDA; bis(4-chlorophenyl)methane is also known as DDM. tmpzr1t_l9r_go_relaxed.owl DDA decarboxylase activity UM-BBD_reactionID:r0520 molecular_function owl:Class GO:0004481 biolink:NamedThing methylene-fatty-acyl-phospholipid synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid methylene fatty acid. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:unsaturated-phospholipid methyltransferase (methenylating)|cyclopropane synthetase activity|unsaturated-phospholipid methyltransferase activity EC:2.1.1.16|RHEA:17549|MetaCyc:2.1.1.16-RXN molecular_function owl:Class GO:0045773 biolink:NamedThing positive regulation of axon extension Any process that activates or increases the frequency, rate or extent of axon extension. tmpzr1t_l9r_go_relaxed.owl activation of axon extension|up-regulation of axon extension|stimulation of axon extension|up regulation of axon extension|upregulation of axon extension biological_process owl:Class GO:0042177 biolink:NamedThing negative regulation of protein catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein breakdown|negative regulation of protein catabolism|down regulation of protein catabolic process|negative regulation of protein degradation|downregulation of protein catabolic process|inhibition of protein catabolic process|down-regulation of protein catabolic process biological_process owl:Class GO:0097334 biolink:NamedThing response to perphenazine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a perphenazine stimulus. Perphenazine is a phenothiazine derivative having a chloro substituent at the 2-position and a 3-[4-(2-hydroxyethyl)piperazin-1-yl]propyl group at the N-10 position. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:01:14Z biological_process owl:Class GO:0002255 biolink:NamedThing tissue kallikrein-kinin cascade A series of reactions that takes place outside the cell initiated by the action of tissue (glandular) kallikreins on low molecular weight kininogen in response to tissue damage. Tissue kallikreins are present in glandular tissues and their fluids, such as the salivary glands, sweat glands, pancreas, and kidney. The ultimate products of the tissue kallikrein-kinin cascade include kallidin and bradykinin, agents known to induce smooth muscle contraction, vasoconstriction, and increased vascular permeability. tmpzr1t_l9r_go_relaxed.owl glandular kallikrein-kinin cascade biological_process owl:Class GO:0002254 biolink:NamedThing kinin cascade A series of reactions that takes place outside the cell that occur as a result of by-products of tissue damage, including collagen, cartilage, and basement membrane. The ultimate product of the kinin cascade include kallidin and bradykinin, agents known to induce smooth muscle contraction, vasoconstriction, and increased vascular permeability. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072752 biolink:NamedThing cellular response to rapamycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rapamycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-14T11:13:34Z biological_process owl:Class GO:1900290 biolink:NamedThing positive regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process Any process that activates or increases the frequency, rate or extent of coenzyme F420-dependent bicyclic nitroimidazole catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of coenzyme F420-dependent nitroimidazole breakdown|positive regulation of coenzyme F420-dependent nitroreductase activity|upregulation of coenzyme F420-dependent nitroimidazole reduction|positive regulation of coenzyme F420-dependent nitroimidazole catabolism|upregulation of coenzyme F420-dependent nitroimidazole breakdown|up-regulation of coenzyme F420-dependent nitroreductase activity|up regulation of coenzyme F420-dependent nitroimidazole breakdown|activation of coenzyme F420-dependent nitroimidazole breakdown|up-regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|up regulation of coenzyme F420-dependent nitroreductase activity|up-regulation of coenzyme F420-dependent nitroimidazole breakdown|positive regulation of coenzyme F420-dependent nitroimidazole reduction|activation of coenzyme F420-dependent nitroimidazole reduction|activation of coenzyme F420-dependent nitroreductase activity|upregulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|up-regulation of coenzyme F420-dependent nitroimidazole catabolism|activation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|upregulation of coenzyme F420-dependent nitroreductase activity|up regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process|activation of coenzyme F420-dependent nitroimidazole catabolism|upregulation of coenzyme F420-dependent nitroimidazole catabolism|up-regulation of coenzyme F420-dependent nitroimidazole reduction|up regulation of coenzyme F420-dependent nitroimidazole reduction|up regulation of coenzyme F420-dependent nitroimidazole catabolism tt 2012-04-05T06:02:59Z biological_process owl:Class GO:1902638 biolink:NamedThing neural crest cell differentiation involved in parathyroid gland development Any neural crest cell differentiation that is involved in parathyroid gland development. tmpzr1t_l9r_go_relaxed.owl pr 2014-01-21T10:03:29Z biological_process owl:Class GO:0043894 biolink:NamedThing acetyl-CoA synthetase acetyltransferase activity Catalysis of the acetylation of residue Lys609 of the enzyme acetyl-CoA synthetase, using acetyl-CoA as substrate. tmpzr1t_l9r_go_relaxed.owl Pat|protein acetyltransferase activity|Pat enzyme molecular_function owl:Class GO:0016407 biolink:NamedThing acetyltransferase activity Catalysis of the transfer of an acetyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl acetylase activity Reactome:R-HSA-6805638|Reactome:R-HSA-6792712|Reactome:R-HSA-5682044|Reactome:R-HSA-73736|Reactome:R-HSA-5628871|Reactome:R-HSA-5660660 molecular_function owl:Class GO:0008232 biolink:NamedThing activator ecdysone receptor complex A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) bound to the ligand ecdysone, which activates transcription of target genes. tmpzr1t_l9r_go_relaxed.owl activator ecdysone receptor holocomplex cellular_component owl:Class GO:0008230 biolink:NamedThing ecdysone receptor holocomplex A heterodimeric complex containing the products of the insect genes Ecdysone receptor (EcR) and ultraspiracle (usp). Binding of ecdysone promotes association between the two subunits, and the receptor complex then initiates molting and metamorphosis by binding DNA and regulating the transcription of target genes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007506 biolink:NamedThing gonadal mesoderm development The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007498 biolink:NamedThing mesoderm development The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072103 biolink:NamedThing glomerulus vasculature morphogenesis The process in which the anatomical structures of the glomerulus vasculature are generated and organized. The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T02:34:54Z biological_process owl:Class GO:0071252 biolink:NamedThing cellular response to sulfur dioxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T03:10:16Z biological_process owl:Class GO:1900073 biolink:NamedThing regulation of neuromuscular synaptic transmission Any process that modulates the frequency, rate or extent of neuromuscular synaptic transmission. tmpzr1t_l9r_go_relaxed.owl kmv 2012-01-26T10:14:10Z biological_process owl:Class GO:0050804 biolink:NamedThing modulation of chemical synaptic transmission Any process that modulates the frequency or amplitude of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. Amplitude, in this case, refers to the change in postsynaptic membrane potential due to a single instance of synaptic transmission. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic transmission|modulation of synaptic transmission|regulation of chemical synaptic transmission biological_process owl:Class GO:0085033 biolink:NamedThing induction by symbiont of host I-kappaB kinase/NF-kappaB cascade Any process that activates or increases the frequency, rate or extent of host NF-kappaB-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by symbiont of host I-kappaB kinase/NF-kappaB cascade|up regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade|positive regulation by symbiont of host NF-kappaB-mediated signal transduction pathway|up-regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade|positive regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade|upregulation by symbiont of host I-kappaB kinase/NF-kappaB cascade|stimulation by symbiont of host I-kappaB kinase/NF-kappaB cascade|positive regulation by symbiont of nuclear factor kappa-light-chain-enhancer of activated B cells mediated signal transduction pathway jl 2010-07-27T02:47:01Z biological_process owl:Class GO:0043123 biolink:NamedThing positive regulation of I-kappaB kinase/NF-kappaB signaling Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl activation of I-kappaB kinase/NF-kappaB cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|up regulation of I-kappaB kinase/NF-kappaB cascade|stimulation of I-kappaB kinase/NF-kappaB cascade|up-regulation of I-kappaB kinase/NF-kappaB cascade|upregulation of I-kappaB kinase/NF-kappaB cascade biological_process owl:Class GO:0102301 biolink:NamedThing gamma-linolenate elongase activity Catalysis of the reaction: malonyl-CoA + gamma-linolenoyl-CoA + H+ = (8Z,11Z,14Z)-3-oxoicosa-8,11,14-trienoyl-CoA + coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12777 molecular_function owl:Class GO:2000741 biolink:NamedThing positive regulation of mesenchymal stem cell differentiation Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:31:34Z biological_process owl:Class GO:2000738 biolink:NamedThing positive regulation of stem cell differentiation Any process that activates or increases the frequency, rate or extent of stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:05:23Z biological_process owl:Class GO:0051782 biolink:NamedThing negative regulation of cell division Any process that stops, prevents, or reduces the frequency, rate or extent of cell division. tmpzr1t_l9r_go_relaxed.owl downregulation of cell division|down-regulation of cell division|inhibition of cell division|down regulation of cell division biological_process owl:Class GO:0033228 biolink:NamedThing cysteine export across plasma membrane The directed movement of cysteine from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl cysteine export biological_process owl:Class GO:1903712 biolink:NamedThing cysteine transmembrane transport The directed movement of cysteine across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-06T08:15:06Z biological_process owl:Class GO:0045653 biolink:NamedThing negative regulation of megakaryocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of megakaryocyte differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of megakaryocyte differentiation|downregulation of megakaryocyte differentiation|inhibition of megakaryocyte differentiation|down regulation of megakaryocyte differentiation biological_process owl:Class GO:0045638 biolink:NamedThing negative regulation of myeloid cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of myeloid cell differentiation|down-regulation of myeloid cell differentiation|inhibition of myeloid cell differentiation|downregulation of myeloid cell differentiation biological_process owl:Class GO:2000359 biolink:NamedThing regulation of binding of sperm to zona pellucida Any process that modulates the frequency, rate or extent of binding of sperm to the zona pellucida. tmpzr1t_l9r_go_relaxed.owl regulation of ZPG binding yaf 2011-02-03T02:42:50Z biological_process owl:Class GO:0045683 biolink:NamedThing negative regulation of epidermis development Any process that stops, prevents, or reduces the frequency, rate or extent of epidermis development. tmpzr1t_l9r_go_relaxed.owl inhibition of epidermis development|negative regulation of epidermal development|down-regulation of epidermis development|negative regulation of hypodermis development|down regulation of epidermis development|downregulation of epidermis development biological_process owl:Class GO:0099050 biolink:NamedThing vesicle scission The membrane scission process that is the final step in the formation of a vesicle, leading to separation from its parent membrane. Vesicle scission involves the constriction of a neck-forming protein complex, consisting e.g. of dynamin, around the budded membrane, leading to vesicle closure during its separation from the parent membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033936 biolink:NamedThing polymannuronate hydrolase activity Catalysis of the endohydrolysis of the D-mannuronide linkages of polymannuronate. tmpzr1t_l9r_go_relaxed.owl polymannuronic acid polymerase activity|poly(mannuronide) mannuronohydrolase activity EC:3.2.1.121|MetaCyc:3.2.1.121-RXN molecular_function owl:Class GO:0043292 biolink:NamedThing contractile fiber Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. tmpzr1t_l9r_go_relaxed.owl contractile fibre cellular_component owl:Class GO:0043232 biolink:NamedThing intracellular non-membrane-bounded organelle Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes. tmpzr1t_l9r_go_relaxed.owl intracellular non-membrane-enclosed organelle cellular_component owl:Class GO:0030093 biolink:NamedThing chloroplast photosystem I Photosystem located in the chloroplast that functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098807 biolink:NamedThing chloroplast thylakoid membrane protein complex A protein complex that is part of a chloroplast thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016578 biolink:NamedThing histone deubiquitination The modification of histones by removal of ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl histone deubiquitylation|histone deubiquitinylation biological_process owl:Class GO:0016579 biolink:NamedThing protein deubiquitination The removal of one or more ubiquitin groups from a protein. tmpzr1t_l9r_go_relaxed.owl protein deubiquitylation|deubiquitination|protein deubiquitinylation GO:0006514 biological_process owl:Class GO:0006688 biolink:NamedThing glycosphingolipid biosynthetic process The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycosphingolipid biosynthesis|glycosphingolipid anabolism|glycosphingolipid formation|glycosphingolipid synthesis biological_process owl:Class GO:0030148 biolink:NamedThing sphingolipid biosynthetic process The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl sphingolipid biosynthesis|sphingolipid synthesis|sphingolipid formation|sphingolipid anabolism MetaCyc:PWY-5129 biological_process owl:Class GO:0050903 biolink:NamedThing leukocyte activation-dependent arrest The formation of an integrin-dependent strong adhesive bond between leukocytes and blood vessel endothelial cells which is dependent on prior activation of the leukocyte and leads to the firm attachment of the leukocyte to the endothelial surface, typically the third step in cellular extravasation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061756 biolink:NamedThing leukocyte adhesion to vascular endothelial cell The attachment of a leukocyte to vascular endothelial cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl dph 2016-02-29T16:42:11Z biological_process owl:Class GO:0004783 biolink:NamedThing sulfite reductase (NADPH) activity Catalysis of the reaction: hydrogen sulfide + 3 NADP+ + 3 H2O = sulfite + 3 NADPH + 3 H+. tmpzr1t_l9r_go_relaxed.owl NADPH:sulfite reductase flavoprotein|sulphite reductase (NADPH) activity|NADPH-dependent sulfite reductase activity|sulfite (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|NADPH-sulfite reductase activity|hydrogen-sulfide:NADP+ oxidoreductase activity|H2S-NADP oxidoreductase activity EC:1.8.1.2|RHEA:13801|MetaCyc:SULFITE-REDUCT-RXN molecular_function owl:Class GO:0150036 biolink:NamedThing regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission Any process that modulates the frequency, rate or extent of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. bc 2018-04-18T09:54:49Z biological_process owl:Class GO:0033900 biolink:NamedThing ribonuclease F activity Catalysis of the endonucleolytic cleavage of RNA precursor into two, leaving 5'-hydroxy and 3'-phosphate groups. tmpzr1t_l9r_go_relaxed.owl ribonuclease F (E. coli) activity|RNase F activity MetaCyc:3.1.27.7-RXN|EC:3.1.27.7 molecular_function owl:Class GO:0016892 biolink:NamedThing endoribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl endoribonuclease activity, producing other than 5'-phosphomonoesters EC:3.1.27.- molecular_function owl:Class GO:0051633 biolink:NamedThing positive regulation of acetylcholine uptake Any process that activates or increases the frequency, rate or extent of the directed movement of acetylcholine into a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of acetylcholine uptake|up regulation of acetylcholine uptake|activation of acetylcholine uptake|upregulation of acetylcholine uptake|up-regulation of acetylcholine uptake|positive regulation of acetylcholine import biological_process owl:Class GO:0032100 biolink:NamedThing positive regulation of appetite Any process that increases appetite. tmpzr1t_l9r_go_relaxed.owl stimulation of appetite|up regulation of appetite|appetite stimulation|positive regulation of hunger|upregulation of appetite|up-regulation of appetite|activation of appetite biological_process owl:Class GO:0032097 biolink:NamedThing positive regulation of response to food Any process that activates, maintains, or increases the rate of a response to a food stimulus. tmpzr1t_l9r_go_relaxed.owl stimulation of response to food|up-regulation of response to food|up regulation of response to food|upregulation of response to food|activation of response to food biological_process owl:Class GO:0032885 biolink:NamedThing regulation of polysaccharide biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090297 biolink:NamedThing positive regulation of mitochondrial DNA replication Any process that increases the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial DNA synthesis tb 2010-03-12T03:58:25Z biological_process owl:Class GO:0090296 biolink:NamedThing regulation of mitochondrial DNA replication Any process that modulates the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial DNA synthesis tb 2010-03-12T03:58:25Z biological_process owl:Class GO:1905461 biolink:NamedThing positive regulation of vascular associated smooth muscle cell apoptotic process Any process that activates or increases the frequency, rate or extent of vascular associated smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of vascular associated smooth muscle cell apoptosis|upregulation of vascular smooth muscle cell apoptotic process|up regulation of vascular smooth muscle cell apoptotic process|up regulation of vascular associated smooth muscle cell apoptotic process|up-regulation of VSMC apoptotic process|up regulation of VSMC apoptosis|positive regulation of vascular smooth muscle cell apoptosis|positive regulation of VSMC apoptosis|up-regulation of vascular associated smooth muscle cell apoptotic process|upregulation of VSMC apoptosis|activation of vascular associated smooth muscle cell apoptosis|upregulation of vascular associated smooth muscle cell apoptotic process|activation of vascular smooth muscle cell apoptosis|activation of VSMC apoptotic process|activation of vascular associated smooth muscle cell apoptotic process|upregulation of vascular smooth muscle cell apoptosis|positive regulation of VSMC apoptotic process|up regulation of VSMC apoptotic process|up-regulation of vascular associated smooth muscle cell apoptosis|positive regulation of vascular smooth muscle cell apoptotic process|activation of VSMC apoptosis|up-regulation of VSMC apoptosis|up regulation of vascular associated smooth muscle cell apoptosis|up regulation of vascular smooth muscle cell apoptosis|up-regulation of vascular smooth muscle cell apoptotic process|upregulation of VSMC apoptotic process|positive regulation of vascular associated smooth muscle cell apoptosis|up-regulation of vascular smooth muscle cell apoptosis|activation of vascular smooth muscle cell apoptotic process rph 2016-09-19T11:34:10Z biological_process owl:Class GO:1905459 biolink:NamedThing regulation of vascular associated smooth muscle cell apoptotic process Any process that modulates the frequency, rate or extent of vascular associated smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of VSMC apoptotic process|regulation of vascular associated smooth muscle cell apoptosis|regulation of VSMC apoptosis|regulation of vascular smooth muscle cell apoptosis|regulation of vascular smooth muscle cell apoptotic process rph 2016-09-19T11:33:54Z biological_process owl:Class GO:0060332 biolink:NamedThing positive regulation of response to interferon-gamma Any process that increases the rate, frequency or extent of a response to interferon-gamma. Response to interferon gamma is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of response to type II interferon|positive regulation of response to type II IFN|positive regulation of response to immune interferon|positive regulation of response to gamma-interferon biological_process owl:Class GO:0075190 biolink:NamedThing negative regulation of hyphopodium formation Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont hyphopodium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of hyphopodium formation on or near host biological_process owl:Class GO:0075188 biolink:NamedThing regulation of hyphopodium formation Any process that modulates the frequency, rate or extent of symbiont hyphopodium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of hyphopodium formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0047507 biolink:NamedThing (deoxy)nucleoside-phosphate kinase activity Catalysis of the reaction: ATP + deoxynucleoside phosphate = ADP + deoxynucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl deoxynucleoside monophosphate kinase activity|deoxynucleoside-5'-monophosphate kinase activity|deoxyribonucleoside monophosphokinase activity|ATP:deoxynucleoside-phosphate phosphotransferase activity RHEA:11216|MetaCyc:DEOXYNUCLEOSIDE-PHOSPHATE-KINASE-RXN|EC:2.7.4.13 molecular_function owl:Class GO:0042957 biolink:NamedThing dextrin transmembrane transporter activity Enables the transfer of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015159 biolink:NamedThing polysaccharide transmembrane transporter activity Enables the transfer of polysaccharides from one side of a membrane to the other. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060410 biolink:NamedThing negative regulation of acetylcholine metabolic process Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving acetylcholine, the acetic acid ester of the organic base choline. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033239 biolink:NamedThing negative regulation of cellular amine metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amines. tmpzr1t_l9r_go_relaxed.owl negative regulation of amine metabolism biological_process owl:Class GO:0031524 biolink:NamedThing menthol metabolic process The chemical reactions and pathways involving menthol, the monoterpene 2-isopropyl-5-methylcyclohexanol. tmpzr1t_l9r_go_relaxed.owl menthol metabolism biological_process owl:Class GO:0039713 biolink:NamedThing viral factory An intracellular compartment in a host cell which increases the efficiency of viral replication, and shields the virus from host defenses. Viral factories can be either cytoplasmic or nuclear and often arise from extensive rearrangement of host cell cytoskeletal and/or cell membrane compartments. tmpzr1t_l9r_go_relaxed.owl virus factory VZ:1951 bf 2013-12-19T14:53:47Z cellular_component owl:Class GO:0004905 biolink:NamedThing type I interferon receptor activity Combining with a type I interferon and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Type I interferons include the interferon-alpha, beta, delta, epsilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl type I IFN receptor activity|interferon-delta receptor activity|interferon-beta receptor activity|interferon-alpha/beta receptor activity|interferon-zeta receptor activity|interferon-tau receptor activity|interferon-epsilon receptor activity|interferon-omega receptor activity|interferon-alpha receptor activity|interferon-kappa receptor activity molecular_function owl:Class GO:0004904 biolink:NamedThing interferon receptor activity Combining with an interferon and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IFN receptor activity molecular_function owl:Class GO:0015078 biolink:NamedThing proton transmembrane transporter activity Enables the transfer of a proton from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl proton transporter activity|hydrogen ion transmembrane transporter activity Reactome:R-HSA-170026|Reactome:R-HSA-1222516|Reactome:R-HSA-74723|Reactome:R-HSA-164834|Reactome:R-HSA-917841 molecular_function owl:Class GO:1990697 biolink:NamedThing protein depalmitoleylation The removal of palmitoleyl group, a 16-carbon monounsaturated fatty acid (C16:1), from a lipoprotein. tmpzr1t_l9r_go_relaxed.owl sp 2015-03-13T08:55:31Z biological_process owl:Class GO:0042159 biolink:NamedThing lipoprotein catabolic process The chemical reactions and pathways resulting in the breakdown of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl lipoprotein degradation|lipoprotein breakdown|lipoprotein catabolism biological_process owl:Class GO:0061428 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to hypoxia Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-06T09:26:05Z biological_process owl:Class GO:0097201 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to stress Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl pr 2011-12-14T09:16:22Z biological_process owl:Class GO:1904482 biolink:NamedThing cellular response to tetrahydrofolate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrahydrofolate stimulus. tmpzr1t_l9r_go_relaxed.owl hal 2015-07-14T14:49:23Z biological_process owl:Class GO:1903393 biolink:NamedThing positive regulation of adherens junction organization Any process that activates or increases the frequency, rate or extent of adherens junction organization. tmpzr1t_l9r_go_relaxed.owl activation of adherens junction organisation|up-regulation of adherens junction organization|up regulation of adherens junction organization|upregulation of adherens junction assembly and maintenance|up regulation of adherens junction organisation|positive regulation of adherens junction assembly and maintenance|up-regulation of adherens junction assembly and maintenance|upregulation of adherens junction organisation|activation of adherens junction assembly and maintenance|up-regulation of adherens junction organisation|activation of adherens junction organization|up regulation of adherens junction assembly and maintenance|positive regulation of adherens junction organisation|upregulation of adherens junction organization als 2014-08-27T10:08:55Z biological_process owl:Class GO:0050295 biolink:NamedThing steryl-beta-glucosidase activity Catalysis of the reaction: cholesteryl-beta-D-glucoside + H(2)O = D-glucose + cholesterol. tmpzr1t_l9r_go_relaxed.owl steryl-b-glucosidase activity|cholesteryl-beta-D-glucoside glucohydrolase activity EC:3.2.1.104|KEGG_REACTION:R01460|MetaCyc:STERYL-BETA-GLUCOSIDASE-RXN|RHEA:11956 molecular_function owl:Class GO:0034634 biolink:NamedThing glutathione transmembrane transporter activity Enables the transfer of glutathione, the tripeptide glutamylcysteinylglycine, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900312 biolink:NamedThing regulation of maltohexaose transport Any process that modulates the frequency, rate or extent of maltohexaose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:59:18Z biological_process owl:Class GO:0008951 biolink:NamedThing palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity Catalysis of the reaction: a palmitoleoyl-[acyl-carrier protein] + alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA = KDO2-(palmitoleoyl)-lipid IVA + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl palmitoleoyl ACP-dependent acyltransferase activity RHEA:44012|MetaCyc:PALMITOTRANS-RXN molecular_function owl:Class GO:0043533 biolink:NamedThing inositol 1,3,4,5 tetrakisphosphate binding Binding to inositol 1,3,4,5 tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl InsP4 binding|IP4 binding molecular_function owl:Class GO:0043178 biolink:NamedThing alcohol binding Binding to an alcohol, any of a class of alkyl compounds containing a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048576 biolink:NamedThing positive regulation of short-day photoperiodism, flowering Any process that activates, maintains or increases short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl activation of short-day photoperiodism, flowering|up-regulation of short-day photoperiodism, flowering|stimulation of short-day photoperiodism, flowering|upregulation of short-day photoperiodism, flowering|up regulation of short-day photoperiodism, flowering biological_process owl:Class GO:0048582 biolink:NamedThing positive regulation of post-embryonic development Any process that activates or increases the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. tmpzr1t_l9r_go_relaxed.owl upregulation of post-embryonic development|up-regulation of post-embryonic development|up regulation of post-embryonic development|stimulation of post-embryonic development|activation of post-embryonic development biological_process owl:Class GO:2000752 biolink:NamedThing regulation of glucosylceramide catabolic process Any process that modulates the frequency, rate or extent of glucosylceramide catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glucosylceramide degradation|regulation of glucosylceramide catabolism|regulation of glucosylceramide breakdown rl 2011-06-16T03:12:04Z biological_process owl:Class GO:1905038 biolink:NamedThing regulation of membrane lipid metabolic process Any process that modulates the frequency, rate or extent of membrane lipid metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of membrane lipid metabolism tb 2016-03-08T20:41:32Z biological_process owl:Class GO:0019709 biolink:NamedThing iron incorporation into iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide The incorporation of iron into a nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide, found in carbon monoxide dehydrogenase. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulphide RESID:AA0310 biological_process owl:Class GO:0019724 biolink:NamedThing B cell mediated immunity Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells. tmpzr1t_l9r_go_relaxed.owl B-cell mediated immunity|B-lymphocyte mediated immune effector process|B lymphocyte mediated immune effector process|B-lymphocyte mediated immunity|B-cell mediated immune effector process|B lymphocyte mediated immunity biological_process owl:Class GO:0002460 biolink:NamedThing adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains An immune response mediated by lymphocytes expressing specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments encoding immunoglobulin superfamily domains. Recombined receptors for antigen encoded by immunoglobulin superfamily domains include T cell receptors and immunoglobulins (antibodies) produced by B cells. The first encounter with antigen elicits a primary immune response that is slow and not of great magnitude. T and B cells selected by antigen become activated and undergo clonal expansion. A fraction of antigen-reactive T and B cells become memory cells, whereas others differentiate into effector cells. The memory cells generated during the primary response enable a much faster and stronger secondary immune response upon subsequent exposures to the same antigen (immunological memory). An example of this is the adaptive immune response found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043405 biolink:NamedThing regulation of MAP kinase activity Any process that modulates the frequency, rate or extent of MAP kinase activity. tmpzr1t_l9r_go_relaxed.owl Regulation of MAPK activity|regulation of mitogen activated protein kinase activity|regulation of mitogen-activated protein kinase activity biological_process owl:Class GO:1903683 biolink:NamedThing positive regulation of epithelial cell-cell adhesion involved in epithelium migration Any process that activates or increases the frequency, rate or extent of epithelial cell-cell adhesion involved in epithelium migration. tmpzr1t_l9r_go_relaxed.owl up regulation of epithelial cell-cell adhesion involved in epithelium migration|up-regulation of epithelial cell-cell adhesion involved in epithelium migration|upregulation of epithelial cell-cell adhesion involved in epithelium migration|activation of epithelial cell-cell adhesion involved in epithelium migration als 2014-12-01T13:25:22Z biological_process owl:Class GO:1903681 biolink:NamedThing regulation of epithelial cell-cell adhesion involved in epithelium migration Any process that modulates the frequency, rate or extent of epithelial cell-cell adhesion involved in epithelium migration. tmpzr1t_l9r_go_relaxed.owl als 2014-12-01T13:25:05Z biological_process owl:Class GO:1904194 biolink:NamedThing positive regulation of cholangiocyte apoptotic process Any process that activates or increases the frequency, rate or extent of cholangiocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of epithelial cell of bile duct apoptotic process|up-regulation of cholangiocyte apoptotic process|upregulation of epithelial cell of bile duct apoptotic process|up regulation of cholangiocyte apoptosis|upregulation of epithelial cell of bile duct apoptosis|positive regulation of cholangiocyte apoptosis|activation of cholangiocyte apoptosis|activation of cholangiocyte apoptotic process|upregulation of cholangiocyte apoptosis|up-regulation of epithelial cell of bile duct apoptosis|up-regulation of cholangiocyte apoptosis|activation of epithelial cell of bile duct apoptosis|activation of epithelial cell of bile duct apoptotic process|up regulation of cholangiocyte apoptotic process|positive regulation of epithelial cell of bile duct apoptosis|up regulation of epithelial cell of bile duct apoptotic process|upregulation of cholangiocyte apoptotic process|positive regulation of epithelial cell of bile duct apoptotic process|up regulation of epithelial cell of bile duct apoptosis sl 2015-05-06T15:26:00Z biological_process owl:Class GO:1904192 biolink:NamedThing regulation of cholangiocyte apoptotic process Any process that modulates the frequency, rate or extent of cholangiocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of epithelial cell of bile duct apoptotic process|regulation of cholangiocyte apoptosis|regulation of epithelial cell of bile duct apoptosis sl 2015-05-06T15:25:48Z biological_process owl:Class GO:1901056 biolink:NamedThing trimethylenediamine catabolic process The chemical reactions and pathways resulting in the breakdown of trimethylenediamine. tmpzr1t_l9r_go_relaxed.owl trimethylenediamine catabolism|trimethylenediamine breakdown|trimethylenediamine degradation yaf 2012-06-28T04:53:06Z biological_process owl:Class GO:0071414 biolink:NamedThing cellular response to methotrexate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methotrexate stimulus. Methotrexate is 4-amino-10-methylformic acid, a folic acid analogue that is a potent competitive inhibitor of dihydrofolate reductase. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T03:10:30Z biological_process owl:Class GO:0031427 biolink:NamedThing response to methotrexate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methotrexate stimulus. Methotrexate is 4-amino-10-methylformic acid, a folic acid analogue that is a potent competitive inhibitor of dihydrofolate reductase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032384 biolink:NamedThing negative regulation of intracellular cholesterol transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol within cells. tmpzr1t_l9r_go_relaxed.owl down-regulation of intracellular cholesterol transport|down regulation of intracellular cholesterol transport|downregulation of intracellular cholesterol transport|inhibition of intracellular cholesterol transport biological_process owl:Class GO:0032375 biolink:NamedThing negative regulation of cholesterol transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of cholesterol transport|downregulation of cholesterol transport|inhibition of cholesterol transport|down regulation of cholesterol transport biological_process owl:Class GO:0004067 biolink:NamedThing asparaginase activity Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3. tmpzr1t_l9r_go_relaxed.owl L-asparaginase activity|alpha-asparaginase activity|asparaginase II|colaspase activity|crasnitin|L-asparagine amidohydrolase activity|leunase activity|elspar EC:3.5.1.1|RHEA:21016|MetaCyc:ASPARAGHYD-RXN|Reactome:R-HSA-6797627 molecular_function owl:Class GO:0043895 biolink:NamedThing cyclomaltodextrin glucanotransferase activity Catalysis of the cyclization of part of a 1,4-alpha-D-glucan chain by formation of a 1,4-alpha-D-glucosidic bond. tmpzr1t_l9r_go_relaxed.owl alpha-cyclodextrin glucanotransferase|beta-cyclodextrin glucanotransferase|cyclodextrin glycosyltransferase|Bacillus macerans amylase|cyclodextrin glucanotransferase|1,4-alpha-D-glucan 4-alpha-D-(1,4-alpha-D-glucano)-transferase (cyclizing)|CGTase|gamma-cyclodextrin glycosyltransferase|konchizaimu|beta-cyclodextrin glycosyltransferase|alpha-1,4-glucan 4-glycosyltransferase, cyclizing|BMA|cyclomaltodextrin glucotransferase|neutral-cyclodextrin glycosyltransferase|alpha-cyclodextrin glycosyltransferase|cyclomaltodextrin glycosyltransferase EC:2.4.1.19|MetaCyc:2.4.1.19-RXN molecular_function owl:Class GO:0047874 biolink:NamedThing dolichyldiphosphatase activity Catalysis of the reaction: dolichyl diphosphate + H2O = dolichyl phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl dolichyl-diphosphate phosphohydrolase activity|dolichyl pyrophosphatase activity|dolichol diphosphatase activity|dolichyl diphosphate phosphohydrolase activity RHEA:14385|MetaCyc:DOLICHYLDIPHOSPHATASE-RXN|Reactome:R-HSA-446200|EC:3.6.1.43 molecular_function owl:Class GO:0031756 biolink:NamedThing Edg-3 sphingosine 1-phosphate receptor binding Binding to an Edg-3 sphingosine 1-phosphate receptor. tmpzr1t_l9r_go_relaxed.owl Edg-3 sphingosine 1-phosphate receptor ligand molecular_function owl:Class GO:0048718 biolink:NamedThing cibarial fish-trap bristle morphogenesis The process in which the anatomical structures of a cibarial fish-trap bristle are generated and organized. A cibarial fish-trap bristle is a sensory bristle on the anterior plate of the cibarium. tmpzr1t_l9r_go_relaxed.owl fish trap bristle morphogenesis biological_process owl:Class GO:0008407 biolink:NamedThing chaeta morphogenesis The process in which the anatomical structures of the chaeta are generated and organized. A chaeta is a sensory multicellular cuticular outgrowth of a specifically differentiated cell. tmpzr1t_l9r_go_relaxed.owl bristle morphogenesis biological_process owl:Class GO:0031550 biolink:NamedThing positive regulation of brain-derived neurotrophic factor receptor signaling pathway Any process that activates or increases the frequency, rate or extent of signaling via the brain-derived neurotrophic factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of BDNF receptor signaling pathway|positive regulation of brain-derived neurotrophic factor receptor signalling pathway|activation of brain-derived neurotrophic factor receptor signaling pathway|stimulation of brain-derived neurotrophic factor receptor signaling pathway|up regulation of brain-derived neurotrophic factor receptor signaling pathway|upregulation of brain-derived neurotrophic factor receptor signaling pathway|positive regulation of BDNF receptor signalling pathway|up-regulation of brain-derived neurotrophic factor receptor signaling pathway biological_process owl:Class GO:0090605 biolink:NamedThing submerged biofilm formation A process in which planktonically growing microorganisms aggregate and grow on solid substrates under the flow of a liquid and produce extracellular polymers that facilitate attachment and matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl solid substrate biofilm formation tb 2014-09-16T14:44:46Z biological_process owl:Class GO:0001932 biolink:NamedThing regulation of protein phosphorylation Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid phosphorylation biological_process owl:Class GO:0106023 biolink:NamedThing regulation of pupariation Any process that modulates the onset of pupariation. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-24T19:31:39Z biological_process owl:Class GO:0097668 biolink:NamedThing SCF-Saf1/Pof9 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Saf1 in S. cerevisiae (Pof9 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:28:30Z cellular_component owl:Class GO:1905362 biolink:NamedThing negative regulation of endosomal vesicle fusion Any process that stops, prevents or reduces the frequency, rate or extent of endosomal vesicle fusion. tmpzr1t_l9r_go_relaxed.owl downregulation of endosomal vesicle fusion|down-regulation of endosome vesicle fusion|down regulation of endosomal vesicle fusion|inhibition of endosomal vesicle fusion|down regulation of endosome vesicle fusion|down-regulation of endosomal vesicle fusion|inhibition of endosome vesicle fusion|downregulation of endosome vesicle fusion|negative regulation of endosome vesicle fusion bc 2016-08-16T11:40:44Z biological_process owl:Class GO:1901262 biolink:NamedThing negative regulation of sorocarp spore cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of sorocarp spore cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of sorocarp spore cell differentiation|inhibition of sorocarp spore cell differentiation|down regulation of sorocarp spore cell differentiation|down-regulation of sorocarp spore cell differentiation jl 2012-08-15T09:44:50Z biological_process owl:Class GO:1990127 biolink:NamedThing intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of osmotic stress, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl pr 2013-06-19T13:55:06Z biological_process owl:Class GO:1900745 biolink:NamedThing positive regulation of p38MAPK cascade Any process that activates or increases the frequency, rate or extent of p38MAPK cascade. tmpzr1t_l9r_go_relaxed.owl activation of p38 MAPK cascade|upregulation of p38 MAPK cascade|activation of p38MAPK cascade|positive regulation of p38 cascade|positive regulation of p38 MAPK cascade|up regulation of p38MAPK cascade|upregulation of p38 cascade|up regulation of p38 MAPK cascade|up-regulation of p38MAPK cascade|activation of p38 cascade|up-regulation of p38 cascade|up-regulation of p38 MAPK cascade|upregulation of p38MAPK cascade|up regulation of p38 cascade pm 2012-05-28T02:40:48Z biological_process owl:Class GO:0032836 biolink:NamedThing glomerular basement membrane development The process whose specific outcome is the progression of the glomerular basement membrane over time, from its formation to the mature structure. The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030198 biolink:NamedThing extracellular matrix organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. tmpzr1t_l9r_go_relaxed.owl extracellular matrix organization and biogenesis|extracellular matrix organisation biological_process owl:Class GO:0051058 biolink:NamedThing negative regulation of small GTPase mediated signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of small GTPase mediated signal transduction. tmpzr1t_l9r_go_relaxed.owl down-regulation of small GTPase mediated signal transduction|down regulation of small GTPase mediated signal transduction|downregulation of small GTPase mediated signal transduction|inhibition of small GTPase mediated signal transduction|negative regulation of small GTPase-mediated signal transduction biological_process owl:Class GO:0051056 biolink:NamedThing regulation of small GTPase mediated signal transduction Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction. tmpzr1t_l9r_go_relaxed.owl regulation of small GTPase-mediated signal transduction biological_process owl:Class GO:0006127 biolink:NamedThing glycerophosphate shuttle The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-6118 biological_process owl:Class GO:0046272 biolink:NamedThing stilbene catabolic process The chemical reactions and pathways resulting in the breakdown of stilbenes, a class of polyketide compounds formed from cinnamic acid and three molecules of malonyl CoA. tmpzr1t_l9r_go_relaxed.owl stilbene degradation|stilbene catabolism|stilbene breakdown biological_process owl:Class GO:1990579 biolink:NamedThing peptidyl-serine trans-autophosphorylation The phosphorylation of a peptidyl-serine to form peptidyl-O-phospho-L-serine on an identical protein. For example, phosphorylation by the other kinase within a homodimer. tmpzr1t_l9r_go_relaxed.owl serine transautophosphorylation|serine autophosphorylation in trans bf 2014-12-09T09:20:08Z biological_process owl:Class GO:0080109 biolink:NamedThing indole-3-acetonitrile nitrile hydratase activity Catalysis of the reaction: indole-3-acetonitrile + H2O = indole-3-acetamide. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.84|KEGG_REACTION:R04020|MetaCyc:RXN-7567 dhl 2009-04-23T04:37:57Z molecular_function owl:Class GO:0018822 biolink:NamedThing nitrile hydratase activity Catalysis of the reaction: an aliphatic amide = a nitrile + H2O. tmpzr1t_l9r_go_relaxed.owl H-NHase activity|aliphatic nitrile hydratase activity|3-cyanopyridine hydratase activity|NHase activity|L-NHase activity|aliphatic-amide hydro-lyase (nitrile-forming)|nitrile hydro-lyase activity|acrylonitrile hydratase activity UM-BBD_enzymeID:e0067|RHEA:12673|MetaCyc:NITRILE-HYDRATASE-RXN|EC:4.2.1.84 molecular_function owl:Class GO:0046300 biolink:NamedThing 2,4-dichlorophenoxyacetic acid catabolic process The chemical reactions and pathways resulting in the breakdown of 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds. tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorophenoxyacetic acid catabolism|2,4-dichlorophenoxyacetic acid breakdown|2,4-dichlorophenoxyacetic acid degradation biological_process owl:Class GO:0033353 biolink:NamedThing S-adenosylmethionine cycle A cyclic series of interconversions involving S-adenosylmethionine, S-adenosyl-L-homocysteine, L-cysteine, and L-methionine. Couples utilization of the methyl group of SAM with recycling of the homocysteinyl group and regeneration of methionine. tmpzr1t_l9r_go_relaxed.owl activated methyl cycle|SAM cycle MetaCyc:PWY-5041 biological_process owl:Class GO:0051960 biolink:NamedThing regulation of nervous system development Any process that modulates the frequency, rate or extent of nervous system development, the origin and formation of nervous tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060102 biolink:NamedThing collagen and cuticulin-based cuticle extracellular matrix A collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer. The cuticle serves essential functions in body morphology, locomotion, and environmental protection. An example of this component is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl collagen and cuticulin-based exoskeleton extracellular matrix cellular_component owl:Class GO:0062023 biolink:NamedThing collagen-containing extracellular matrix An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-13T12:47:21Z cellular_component owl:Class GO:0007264 biolink:NamedThing small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. tmpzr1t_l9r_go_relaxed.owl small GTPase-mediated signal transduction biological_process owl:Class GO:0070538 biolink:NamedThing oleic acid binding Binding to oleic acid, the 18-carbon monounsaturated fatty acid (9Z)-octadec-9-enoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005504 biolink:NamedThing fatty acid binding Binding to a fatty acid, an aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072190 biolink:NamedThing ureter urothelium development The process whose specific outcome is the progression of the urothelium of the ureter over time, from its formation to the mature structure. The urothelium is an epithelium that makes up the epithelial tube of the ureter. tmpzr1t_l9r_go_relaxed.owl ureter epithelium development mah 2010-03-01T01:46:31Z biological_process owl:Class GO:0060429 biolink:NamedThing epithelium development The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086067 biolink:NamedThing AV node cell to bundle of His cell communication The process that mediates interactions between an AV node cell and its surroundings that contributes to the process of the AV node cell communicating with a bundle of His cell in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl atrioventricular node cell to bundle of His cell communication dph 2011-11-22T09:11:44Z biological_process owl:Class GO:0086065 biolink:NamedThing cell communication involved in cardiac conduction Any process that mediates interactions between a cell and its surroundings that contributes to the process of cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T08:57:02Z biological_process owl:Class GO:0051167 biolink:NamedThing xylulose 5-phosphate metabolic process The chemical reactions and pathways involving xylulose 5-phosphate, a derivative of the ketopentose xylulose phosphorylated at the 5 carbon; it is an intermediate in the pentose phosphate pathway. tmpzr1t_l9r_go_relaxed.owl xylulose-5-phosphate metabolism|D-xylulose 5-phosphate metabolism|xylulose 5-phosphate metabolism|xylulose-5-phosphate metabolic process|D-xylulose-5-phosphate metabolic process|D-xylulose 5-phosphate metabolic process|D-xylulose-5-phosphate metabolism biological_process owl:Class GO:2001006 biolink:NamedThing regulation of cellulose biosynthetic process Any process that modulates the frequency, rate or extent of cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellulose synthesis|regulation of cellulose biosynthesis|regulation of cellulose formation|regulation of cellulose anabolism tt 2011-08-08T08:42:17Z biological_process owl:Class GO:1905049 biolink:NamedThing negative regulation of metallopeptidase activity Any process that stops, prevents or reduces the frequency, rate or extent of metallopeptidase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of metallopeptidase activity|inhibition of metalloproteinase activity|inhibition of metallopeptidase activity|down-regulation of metallopeptidase activity|down-regulation of metalloprotease activity|negative regulation of metalloprotease activity|down regulation of metallopeptidase activity|down regulation of metalloproteinase activity|downregulation of metalloproteinase activity|down-regulation of metalloproteinase activity|down regulation of metalloprotease activity|inhibition of metalloprotease activity|downregulation of metalloprotease activity|negative regulation of metalloproteinase activity mm2 2016-03-15T16:44:37Z biological_process owl:Class GO:0010466 biolink:NamedThing negative regulation of peptidase activity Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904846 biolink:NamedThing negative regulation of establishment of bipolar cell polarity Any process that stops, prevents or reduces the frequency, rate or extent of establishment of bipolar cell polarity. tmpzr1t_l9r_go_relaxed.owl downregulation of establishment of bipolar cell polarity|down-regulation of establishment of bipolar cell polarity|down regulation of establishment of bipolar cell polarity|inhibition of establishment of bipolar cell polarity al 2015-12-08T15:06:30Z biological_process owl:Class GO:0061172 biolink:NamedThing regulation of establishment of bipolar cell polarity Any process that modulates the rate, frequency or extent of the establishment of bipolar cell polarity. Bipolar organization is the organization that is a mirror image along an axis from a plane. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-30T08:51:27Z biological_process owl:Class GO:0001913 biolink:NamedThing T cell mediated cytotoxicity The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors. tmpzr1t_l9r_go_relaxed.owl T cell mediated cytolysis|T-cell mediated cytotoxicity|T-cell mediated cell death|T-cell mediated cell killing|T cell mediated cell death|T-lymphocyte mediated cytotoxicity|T cell mediated cell killing|T-cell mediated apoptosis|T lymphocyte mediated cytotoxicity|T cell mediated apoptosis Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in the induction of apoptosis in the target cell. Note that both CD4 and CD8 positive T cells can mediate apoptosis of target cells, independently of their definition as 'helper' T cells or not. biological_process owl:Class GO:0001909 biolink:NamedThing leukocyte mediated cytotoxicity The directed killing of a target cell by a leukocyte. tmpzr1t_l9r_go_relaxed.owl immune cell mediated cell death|immune cell mediated cytotoxicity|leucocyte mediated cytotoxicity|immune cell mediated cell killing Note that this term and its children describe contact-dependent killing of target cells by lymphocytes and myeloid cells of the immune system. biological_process owl:Class GO:0097423 biolink:NamedThing mitochondrion-associated adherens complex An organelle arrangement comprised of the following elements: a mitochondrion positioned near the presynaptic membrane; an electron-dense mitochondrial plaque adjacent to the outer mitochondrial membrane that faces the presynaptic membrane; filament-like elements appearing to link the mitochondrial plaque to a cell-cell junction region (sometimes termed punctum adherens); tubular or vesicular-appearing membrane (also called vesicular chain) interposed among the filaments. Mitochondrion-associated adherens complexes were initially described in the dorsal horn of the spinal cord. They are found in calyces and other large terminals of the auditory brainstem, and in a variety of mammalian species including humans. tmpzr1t_l9r_go_relaxed.owl mitochondrial adhaerens complex|MAC NIF_Subcellular:sao1933817066 pr 2012-11-07T13:38:50Z cellular_component owl:Class GO:0006853 biolink:NamedThing carnitine shuttle The transfer of acyl groups to and from acyl-CoA molecules to form O-acylcarnitine, which can exchange across the mitochondrial inner membrane with unacylated carnitine. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Carnitine#Role_in_fatty_acid_metabolism See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'. biological_process owl:Class GO:0045198 biolink:NamedThing establishment of epithelial cell apical/basal polarity The specification and formation of the apicobasal polarity of an epithelial cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090162 biolink:NamedThing establishment of epithelial cell polarity The specification and formation of anisotropic intracellular organization of an epithelial cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T08:58:27Z biological_process owl:Class GO:2000119 biolink:NamedThing negative regulation of sodium-dependent phosphate transport Any process that stops, prevents, or reduces the frequency, rate or extent of sodium-dependent phosphate transport. tmpzr1t_l9r_go_relaxed.owl jl 2010-09-23T01:35:03Z biological_process owl:Class GO:2000118 biolink:NamedThing regulation of sodium-dependent phosphate transport Any process that modulates the frequency, rate or extent of sodium-dependent phosphate transport. tmpzr1t_l9r_go_relaxed.owl jl 2010-09-23T01:34:59Z biological_process owl:Class GO:0062140 biolink:NamedThing hyphae septin collar A septin collar in pathogenic fungi involved in the constriction of hyphae at the plant plasmodesma enabling penetration of an adjacent cell. tmpzr1t_l9r_go_relaxed.owl septin collar of invasive hyphae https://github.com/geneontology/go-ontology/issues/19013 dph 2019-08-06T14:31:04Z cellular_component owl:Class GO:0032173 biolink:NamedThing septin collar A tubular, hourglass-shaped structure composed of highly ordered arrays of septin filaments; in budding yeast cells, the septin collar forms from the initial septin ring by expanding into the daughter cell. tmpzr1t_l9r_go_relaxed.owl septin hourglass https://github.com/geneontology/go-ontology/issues/19534 cellular_component owl:Class GO:0002733 biolink:NamedThing regulation of myeloid dendritic cell cytokine production Any process that modulates the frequency, rate, or extent of myeloid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002886 biolink:NamedThing regulation of myeloid leukocyte mediated immunity Any process that modulates the frequency, rate, or extent of myeloid leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035178 biolink:NamedThing turning behavior Fine-tuning the spatial position of an organism in response to variability in their environment. For example, reorientation of an organism in the direction of a food source. tmpzr1t_l9r_go_relaxed.owl turning behaviour biological_process owl:Class GO:0007626 biolink:NamedThing locomotory behavior The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions. tmpzr1t_l9r_go_relaxed.owl locomotion in response to stimulus|behavior via locomotion|locomotory behavioral response to stimulus|locomotory behaviour|locomotory behavioural response to stimulus biological_process owl:Class GO:0045602 biolink:NamedThing negative regulation of endothelial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of endothelial cell differentiation|downregulation of endothelial cell differentiation|down-regulation of endothelial cell differentiation|down regulation of endothelial cell differentiation biological_process owl:Class GO:0010061 biolink:NamedThing regulation of trichoblast fate specification Any process that modulates trichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000067 biolink:NamedThing regulation of root morphogenesis Any process that modulates the frequency, rate or extent of root morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-23T09:25:13Z biological_process owl:Class GO:0010278 biolink:NamedThing chloroplast outer membrane translocon The protein transport machinery of the chloroplast outer membrane that contains at least three components Toc159, Toc75 and Toc34, interacts with precursor proteins which are imported into the chloroplast in a GTP dependant manner. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018902 biolink:NamedThing 1,3-dichloro-2-propanol metabolic process The chemical reactions and pathways involving 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic. DCP is used as a general solvent, as an intermediate in organic synthesis and in paints, varnishes, lacquers, water colors, binders and photographic lacquers. tmpzr1t_l9r_go_relaxed.owl DCP metabolism|1,3-dichloro-2-propanol metabolism|DCP metabolic process UM-BBD_pathwayID:dcp biological_process owl:Class GO:1900469 biolink:NamedThing negative regulation of phosphatidylserine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of phosphatidylserine biosynthesis|negative regulation of phosphatidylserine synthesis|negative regulation of phosphatidylserine anabolism|downregulation of phosphatidylserine anabolism|downregulation of phosphatidylserine biosynthesis|down-regulation of phosphatidylserine synthesis|inhibition of phosphatidylserine formation|negative regulation of phosphatidylserine formation|downregulation of phosphatidylserine biosynthetic process|inhibition of phosphatidylserine biosynthetic process|inhibition of phosphatidylserine synthesis|downregulation of phosphatidylserine formation|negative regulation of phosphatidylserine biosynthesis|down regulation of phosphatidylserine synthesis|down regulation of phosphatidylserine biosynthetic process|down-regulation of phosphatidylserine formation|down regulation of phosphatidylserine formation|inhibition of phosphatidylserine biosynthesis|down regulation of phosphatidylserine anabolism|inhibition of phosphatidylserine anabolism|downregulation of phosphatidylserine synthesis|down-regulation of phosphatidylserine biosynthetic process|down regulation of phosphatidylserine biosynthesis|down-regulation of phosphatidylserine anabolism dgf 2012-05-01T08:01:11Z biological_process owl:Class GO:0150180 biolink:NamedThing negative regulation of phosphatidylserine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylserine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:06:06Z biological_process owl:Class GO:1990113 biolink:NamedThing RNA polymerase I assembly The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase I complex. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase I complex assembly|RNA Polymerase I complex assembly rb 2013-05-31T21:44:41Z biological_process owl:Class GO:1900564 biolink:NamedThing chanoclavine-I metabolic process The chemical reactions and pathways involving chanoclavine-I. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I metabolism di 2012-05-15T06:30:25Z biological_process owl:Class GO:0060878 biolink:NamedThing pouch outgrowth involved in semicircular canal formation The morphogenetic process in which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T10:01:01Z biological_process owl:Class GO:0051564 biolink:NamedThing positive regulation of smooth endoplasmic reticulum calcium ion concentration Any process that increases the concentration of calcium ions in the smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl smooth endoplasmic reticulum calcium ion concentration elevation|elevation of smooth ER calcium ion concentration|elevation of smooth endoplasmic reticulum calcium ion concentration|elevation of calcium ion concentration in smooth endoplasmic reticulum biological_process owl:Class GO:0032470 biolink:NamedThing positive regulation of endoplasmic reticulum calcium ion concentration Any process that increases the concentration of calcium ions in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl elevation of endoplasmic reticulum calcium ion concentration|endoplasmic reticulum calcium ion concentration elevation|elevation of ER calcium ion concentration|elevation of calcium ion concentration in endoplasmic reticulum biological_process owl:Class GO:0045818 biolink:NamedThing negative regulation of glycogen catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen. tmpzr1t_l9r_go_relaxed.owl negative regulation of glycogenolysis|negative regulation of glycogen catabolism|negative regulation of glycogen degradation|inhibition of glycogen catabolic process|negative regulation of glycogen breakdown|down regulation of glycogen catabolic process|down-regulation of glycogen catabolic process|downregulation of glycogen catabolic process biological_process owl:Class GO:1901337 biolink:NamedThing thioester transport The directed movement of a thioester into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-03T13:14:44Z biological_process owl:Class GO:0034679 biolink:NamedThing integrin alpha9-beta1 complex An integrin complex that comprises one alpha9 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1 complex|alpha9-beta1 integrin complex cellular_component owl:Class GO:1900310 biolink:NamedThing negative regulation of maltoheptaose metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of maltoheptaose metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of maltoheptaose metabolism|negative regulation of maltoheptaose metabolism|down-regulation of maltoheptaose metabolism|inhibition of maltoheptaose metabolic process|down regulation of maltoheptaose metabolic process|down-regulation of maltoheptaose metabolic process|downregulation of maltoheptaose metabolic process|downregulation of maltoheptaose metabolism|down regulation of maltoheptaose metabolism tt 2012-04-05T07:58:58Z biological_process owl:Class GO:1900309 biolink:NamedThing regulation of maltoheptaose metabolic process Any process that modulates the frequency, rate or extent of maltoheptaose metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of maltoheptaose metabolism tt 2012-04-05T07:58:48Z biological_process owl:Class GO:2000684 biolink:NamedThing negative regulation of cellular response to X-ray Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to X-ray. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular response to X-ray radiation stimulus yaf 2011-05-10T01:40:45Z biological_process owl:Class GO:2000683 biolink:NamedThing regulation of cellular response to X-ray Any process that modulates the frequency, rate or extent of cellular response to X-ray. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to X-ray radiation stimulus yaf 2011-05-10T01:40:41Z biological_process owl:Class GO:0046886 biolink:NamedThing positive regulation of hormone biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones. tmpzr1t_l9r_go_relaxed.owl up regulation of hormone biosynthetic process|stimulation of hormone biosynthetic process|upregulation of hormone biosynthetic process|positive regulation of hormone anabolism|positive regulation of hormone synthesis|positive regulation of hormone biosynthesis|positive regulation of hormone formation|up-regulation of hormone biosynthetic process|activation of hormone biosynthetic process biological_process owl:Class GO:0033420 biolink:NamedThing CUG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CUG codon. tmpzr1t_l9r_go_relaxed.owl leucine tRNA|CTG codon-amino acid adaptor activity Note that in the standard genetic code, CTG codes for leucine. molecular_function owl:Class GO:0048804 biolink:NamedThing imaginal disc-derived female genitalia morphogenesis The process in which the anatomical structures of female genitalia are generated and organized from the genital disc. tmpzr1t_l9r_go_relaxed.owl female genital morphogenesis biological_process owl:Class GO:0048805 biolink:NamedThing imaginal disc-derived genitalia morphogenesis The process in which the anatomical structures of genitalia are generated and organized from the genital imaginal disc. tmpzr1t_l9r_go_relaxed.owl genital morphogenesis biological_process owl:Class GO:0045782 biolink:NamedThing positive regulation of cell budding Any process that activates or increases the frequency, rate or extent of cell budding. tmpzr1t_l9r_go_relaxed.owl up regulation of cell budding|stimulation of cell budding|activation of cell budding|positive regulation of budding|up-regulation of cell budding|upregulation of cell budding biological_process owl:Class GO:0002411 biolink:NamedThing T cell tolerance induction to tumor cell A process of tolerance induction dependent on T cells which leads to immunological tolerance of a tumor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900277 biolink:NamedThing negative regulation of proteinase activated receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of proteinase activated receptor activity. tmpzr1t_l9r_go_relaxed.owl downregulation of proteinase activated receptor activity|down-regulation of proteinase activated receptor activity|inhibition of proteinase activated receptor activity|down regulation of proteinase activated receptor activity rl 2012-04-04T01:31:29Z biological_process owl:Class GO:0060034 biolink:NamedThing notochord cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features cells that make up the notochord. Differentiation includes the processes involved in commitment of a cell to a notochord cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062109 biolink:NamedThing regulation of DNA recombinase disassembly Any process that modulates the rate, frequency or extent of DNA recombinase disassembly, the disaggregation of a DNA recombinase complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl dph 2019-02-05T13:53:19Z biological_process owl:Class GO:0048236 biolink:NamedThing plant-type sporogenesis The formation of plant spores derived from the products of meiosis. The spore gives rise to gametophytes. tmpzr1t_l9r_go_relaxed.owl plant spore formation biological_process owl:Class GO:0010105 biolink:NamedThing negative regulation of ethylene-activated signaling pathway Any process that stops or prevents ethylene (ethene) signal transduction. tmpzr1t_l9r_go_relaxed.owl down regulation of ethylene mediated signaling pathway|negative regulation of ethene mediated signalling pathway|negative regulation of ethylene mediated signalling pathway|downregulation of ethylene mediated signaling pathway|negative regulation of ethene mediated signaling pathway|inhibition of ethylene mediated signaling pathway|down-regulation of ethylene mediated signaling pathway|negative regulation of ethylene mediated signaling pathway biological_process owl:Class GO:0070298 biolink:NamedThing negative regulation of phosphorelay signal transduction system Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system. tmpzr1t_l9r_go_relaxed.owl negative regulation of histidyl-aspartyl phosphorelay|down-regulation of two-component signal transduction|inhibition of two-component signal transduction|down regulation of two-component signal transduction|downregulation of two-component signal transduction|negative regulation of two-component signal transduction system (phosphorelay) biological_process owl:Class GO:0060056 biolink:NamedThing mammary gland involution The tissue remodeling that removes differentiated mammary epithelia during weaning. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048771 biolink:NamedThing tissue remodeling The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090103 biolink:NamedThing cochlea morphogenesis The process in which the cochlea is generated and organized. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-18T11:45:11Z biological_process owl:Class GO:0010482 biolink:NamedThing regulation of epidermal cell division Any process that modulates the frequency, rate or extent of the physical partitioning and separation of an epidermal cell into daughter cells. An epidermal cell is any of the cells that make up the epidermis. tmpzr1t_l9r_go_relaxed.owl regulation of hypodermal cell division biological_process owl:Class GO:0046873 biolink:NamedThing metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl low affinity metal ion uptake transporter activity|high affinity metal ion uptake transporter activity|heavy metal ion porter activity|heavy metal-exporting ATPase activity|heavy metal ion:hydrogen symporter activity|heavy metal ion transporter activity molecular_function owl:Class GO:0061804 biolink:NamedThing mitotic spindle formation (spindle phase one) The cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase. tmpzr1t_l9r_go_relaxed.owl mitotic spindle elongation during prophase and prometaphase|mitotic spindle elongation during mitotic prophase|mitotic spindle elongation during prophase dph 2016-11-06T23:08:01Z biological_process owl:Class GO:0007051 biolink:NamedThing spindle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spindle, the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. tmpzr1t_l9r_go_relaxed.owl spindle organisation|spindle stabilization|spindle organization and biogenesis GO:0043146 biological_process owl:Class GO:1990303 biolink:NamedThing UBR1-RAD6 ubiquitin ligase complex A ubiquitin ligase complex consisting of UBR1 and RAD6 components. It polyubiquitinates proteins containing non-acetylated N-terminal residues causing their subsequent degradation by the proteasome as part of the Ac/N-End Rule pathway. It recognizes non-acetylated N-terminal methionine if it is followed by a hydrophobic residue. Additionally, it acts in an N-end rule independent manner as a component of a novel quality control pathway for proteins synthesized on cytosolic ribosomes. tmpzr1t_l9r_go_relaxed.owl UBR1-RAD6 complex This complex has been identified in Saccharomyces cerevisiae (P19812) - see PMID:19531475 (inferred from direct assay). bhm 2014-03-03T21:43:49Z cellular_component owl:Class GO:0060339 biolink:NamedThing negative regulation of type I interferon-mediated signaling pathway Any process that decreases the rate, frequency or extent of a type I interferon-mediated signaling pathway. A type I interferon-mediated signaling pathway is the series of molecular events generated as a consequence of a type I interferon binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of type I interferon-mediated signalling pathway biological_process owl:Class GO:0090109 biolink:NamedThing regulation of cell-substrate junction assembly Any process that modulates the rate, frequency, or extent of cell-substrate junction assembly. Cell-substrate junction assembly is the aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-25T11:00:58Z biological_process owl:Class GO:0086083 biolink:NamedThing cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication Binding to a protein or protein complex that results in the connection of a bundle of His cell with a Purkinje myocyte and contributes to the communication between the two cells. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T11:11:03Z molecular_function owl:Class GO:0072072 biolink:NamedThing kidney stroma development The process whose specific outcome is the progression of the kidney stroma over time, from its formation to the mature structure. The kidney stroma is the mesenchyme of the mature kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:35:36Z biological_process owl:Class GO:0072074 biolink:NamedThing kidney mesenchyme development The biological process whose specific outcome is the progression of a kidney mesenchyme from an initial condition to its mature state. This process begins with the formation of kidney mesenchyme and ends with the mature structure. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:39:04Z biological_process owl:Class GO:0009439 biolink:NamedThing cyanate metabolic process The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid. tmpzr1t_l9r_go_relaxed.owl cyanate metabolism MetaCyc:CYANCAT-PWY biological_process owl:Class GO:0048247 biolink:NamedThing lymphocyte chemotaxis The directed movement of a lymphocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072676 biolink:NamedThing lymphocyte migration The movement of a lymphocyte within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T03:38:12Z biological_process owl:Class GO:1990332 biolink:NamedThing Ire1 complex A type-I transmembrane protein complex located in the endoplasmic reticulum (ER) consisting of an IRE1-IRE1 dimer, which forms in response to the accumulation of unfolded protein in the ER. The dimeric complex has endoribonuclease (RNase) activity and evokes the unfolded protein response (UPR) by cleaving an intron of a mRNA coding for the transcription factor HAC1 in yeast or XBP1 in mammals; the complex cleaves a single phosphodiester bond in each of two RNA hairpins (with non-specific base paired stems and loops of consensus sequence CNCNNGN, where N is any base) to remove an intervening intron from the target transcript. tmpzr1t_l9r_go_relaxed.owl IRE1 dimer|ERN1 complex An example of this is Ire1 in Escherichia coli (P32361) in PMID:18191223 (inferred from direct assay). bhm 2014-03-17T10:46:58Z cellular_component owl:Class GO:0042321 biolink:NamedThing negative regulation of circadian sleep/wake cycle, sleep Any process that stops, prevents or reduces the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals. tmpzr1t_l9r_go_relaxed.owl downregulation of circadian sleep/wake cycle, sleep|down regulation of circadian sleep/wake cycle, sleep|negative regulation of sleep|down-regulation of circadian sleep/wake cycle, sleep|inhibition of circadian sleep/wake cycle, sleep biological_process owl:Class GO:0033396 biolink:NamedThing beta-alanine biosynthetic process via 3-ureidopropionate The chemical reactions and pathways resulting in the formation of beta-alanine via the intermediate 3-ureidopropionate. tmpzr1t_l9r_go_relaxed.owl beta-alanine anabolism via 3-ureidopropionate|beta-alanine formation via 3-ureidopropionate|beta-alanine synthesis via 3-ureidopropionate MetaCyc:PWY-3982 biological_process owl:Class GO:0019483 biolink:NamedThing beta-alanine biosynthetic process The chemical reactions and pathways resulting in the formation of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins. tmpzr1t_l9r_go_relaxed.owl beta-alanine formation|beta-alanine synthesis|beta-alanine biosynthesis|beta-alanine anabolism biological_process owl:Class GO:0006446 biolink:NamedThing regulation of translational initiation Any process that modulates the frequency, rate or extent of translational initiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905622 biolink:NamedThing negative regulation of leaf development Any process that stops, prevents or reduces the frequency, rate or extent of leaf development. tmpzr1t_l9r_go_relaxed.owl down regulation of leaf development|downregulation of leaf development|down-regulation of leaf development|inhibition of leaf development pga 2016-10-28T15:29:57Z biological_process owl:Class GO:0052758 biolink:NamedThing coenzyme F420-dependent 2,4,6-trinitrophenol reductase activity Catalysis of the reaction: 2,4,6-trinitrophenol + H- = 2,4,6-trinitrophenol hydride Meisenheimer complex. Coenzyme F420 supplies the hydride (H-) in the reaction. tmpzr1t_l9r_go_relaxed.owl TNP reductase activity|coenzyme F420-dependent 2,4,6-trinitrophenol hydride transferase activity UM-BBD_reactionID:r1065|EC:1.3.99.- ai 2011-09-28T11:06:03Z molecular_function owl:Class GO:0019098 biolink:NamedThing reproductive behavior The specific behavior of an organism that is associated with reproduction. tmpzr1t_l9r_go_relaxed.owl reproductive behaviour|multi-organism reproductive behavior|single-organism reproductive behavior|multicellular organism reproductive behavior|reproductive behavior in a multicellular organism jl 2012-09-19T16:01:37Z GO:0033057|GO:0044705|GO:0044704 biological_process owl:Class GO:0060839 biolink:NamedThing endothelial cell fate commitment The commitment of a cell to an endothelial cell fate and its capacity to differentiate into an endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T03:52:53Z biological_process owl:Class GO:0072148 biolink:NamedThing epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an epithelial cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:05:03Z biological_process owl:Class GO:0032494 biolink:NamedThing response to peptidoglycan Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002237 biolink:NamedThing response to molecule of bacterial origin Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. tmpzr1t_l9r_go_relaxed.owl response to bacteria associated molecule|response to bacterial associated molecule|response to bacterium associated molecule biological_process owl:Class GO:0051307 biolink:NamedThing meiotic chromosome separation The process in which chromosomes are physically detached from each other during meiosis. tmpzr1t_l9r_go_relaxed.owl chromosome separation during meiosis|meiotic chromosome resolution biological_process owl:Class GO:0002711 biolink:NamedThing positive regulation of T cell mediated immunity Any process that activates or increases the frequency, rate, or extent of T cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl activation of T cell mediated immunity|upregulation of T cell mediated immunity|positive regulation of T-cell mediated immunity|up regulation of T cell mediated immunity|up-regulation of T cell mediated immunity|positive regulation of T-lymphocyte mediated immunity|stimulation of T cell mediated immunity|positive regulation of T lymphocyte mediated immunity biological_process owl:Class GO:0002708 biolink:NamedThing positive regulation of lymphocyte mediated immunity Any process that activates or increases the frequency, rate, or extent of lymphocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl up regulation of lymphocyte mediated immunity|stimulation of lymphocyte mediated immunity|up-regulation of lymphocyte mediated immunity|upregulation of lymphocyte mediated immunity|activation of lymphocyte mediated immunity biological_process owl:Class GO:0102860 biolink:NamedThing 1-18:1-2-18:2-phosphatidylcholine synthase activity Catalysis of the reaction: 1-18:1-2-18:1-sn-glycerol-3-phosphocholine + O2 + a reduced electron acceptor <=> 1-18:1-2-18:2-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.22|MetaCyc:RXN-8327 molecular_function owl:Class GO:2000441 biolink:NamedThing negative regulation of toll-like receptor 15 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of toll-like receptor 15 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 15 signalling pathway|negative regulation of TLR15 signaling pathway bf 2011-03-04T10:29:04Z biological_process owl:Class GO:0034122 biolink:NamedThing negative regulation of toll-like receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR signaling pathway|negative regulation of toll-like receptor signalling pathway biological_process owl:Class GO:0048477 biolink:NamedThing oogenesis The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl ovum development Wikipedia:Oogenesis GO:0009993|GO:0048157 biological_process owl:Class GO:0007281 biolink:NamedThing germ cell development The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism. tmpzr1t_l9r_go_relaxed.owl primordial germ cell development|germ-cell development biological_process owl:Class GO:0052089 biolink:NamedThing modulation by symbiont of host salicylic acid-mediated defense response Any process in which a symbiont modulates the frequency, rate or extent of the salicylic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of salicylic acid-mediated defense response of other organism involved in symbiotic interaction|modulation by organism of host SA-mediated defense response GO:0052284 biological_process owl:Class GO:0032848 biolink:NamedThing negative regulation of cellular pH reduction Any process that stops, prevents, or reduces the frequency, rate, or extent of a process that reduces the internal pH of a cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of reduction of pH in cell|down-regulation of cellular pH reduction|negative regulation of cell pH reduction|down regulation of cellular pH reduction|inhibition of cellular pH reduction|downregulation of cellular pH reduction|negative regulation of reduction of cellular pH|negative regulation of intracellular acidification|negative regulation of cellular acidification|negative regulation of intracellular pH reduction biological_process owl:Class GO:0110038 biolink:NamedThing negative regulation of nematode male tail tip morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of nematode male tail tip morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T20:29:00Z biological_process owl:Class GO:0071220 biolink:NamedThing cellular response to bacterial lipoprotein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipoprotein stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:26:36Z biological_process owl:Class GO:0032493 biolink:NamedThing response to bacterial lipoprotein Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipoprotein stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052148 biolink:NamedThing modulation by symbiont of host catalytic activity The process in which an organism effects a change in host enzyme activity. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of catalytic activity of host by symbiont|regulation by symbiont of host catalytic activity|regulation of catalytic activity of host by symbiont|regulation of host catalytic activity by symbiont|modulation by symbiont of host enzyme activity biological_process owl:Class GO:0021936 biolink:NamedThing regulation of cerebellar granule cell precursor proliferation The process that modulates the frequency, rate or extent of granule cell precursor proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042406 biolink:NamedThing extrinsic component of endoplasmic reticulum membrane The component of the endoplasmic reticulum membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to endoplasmic reticulum membrane|extrinsic to ER membrane cellular_component owl:Class GO:0002607 biolink:NamedThing regulation of myeloid dendritic cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of myeloid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080026 biolink:NamedThing response to indolebutyric acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to indolebutyric acid stimulus|response to indole-3-butyric acid stimulus|response to IBA stimulus biological_process owl:Class GO:0009733 biolink:NamedThing response to auxin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. tmpzr1t_l9r_go_relaxed.owl response to auxin stimulus biological_process owl:Class GO:1901842 biolink:NamedThing negative regulation of high voltage-gated calcium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of high voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of high voltage gated calcium channel activity|downregulation of high voltage-dependent calcium channel activity|inhibition of high voltage-gated calcium channel activity|inhibition of high voltage-dependent calcium channel activity|inhibition of high voltage gated calcium channel activity|down regulation of high voltage-gated calcium channel activity|downregulation of high voltage gated calcium channel activity|negative regulation of high voltage-dependent calcium channel activity|downregulation of high voltage-gated calcium channel activity|down-regulation of high voltage gated calcium channel activity|down-regulation of high voltage-dependent calcium channel activity|down regulation of high voltage-dependent calcium channel activity|down-regulation of high voltage-gated calcium channel activity|down regulation of high voltage gated calcium channel activity rl 2013-01-24T19:02:20Z biological_process owl:Class GO:1901841 biolink:NamedThing regulation of high voltage-gated calcium channel activity Any process that modulates the frequency, rate or extent of high voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of high voltage gated calcium channel activity|regulation of high voltage-dependent calcium channel activity rl 2013-01-24T19:02:15Z biological_process owl:Class GO:1905826 biolink:NamedThing negative regulation of selenocysteine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of selenocysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of selenocysteine metabolism|down-regulation of selenocysteine metabolic process|down regulation of selenocysteine metabolism|downregulation of selenocysteine metabolic process|inhibition of selenocysteine metabolism|downregulation of selenocysteine metabolism|down-regulation of selenocysteine metabolism|down regulation of selenocysteine metabolic process|inhibition of selenocysteine metabolic process sl 2017-01-16T19:01:42Z biological_process owl:Class GO:1905825 biolink:NamedThing regulation of selenocysteine metabolic process Any process that modulates the frequency, rate or extent of selenocysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of selenocysteine metabolism sl 2017-01-16T19:01:34Z biological_process owl:Class GO:2000124 biolink:NamedThing regulation of endocannabinoid signaling pathway Any process that modulates the frequency, rate or extent of endocannabinoid signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of endocannabinoid signalling pathway mah 2010-09-29T09:05:43Z biological_process owl:Class GO:0008277 biolink:NamedThing regulation of G protein-coupled receptor signaling pathway Any process that modulates the frequency, rate or extent of G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of G protein coupled receptor protein signalling pathway|regulation of G-protein-coupled receptor protein signalling pathway|regulation of G protein coupled receptor protein signaling pathway|regulation of GPCR protein signalling pathway|regulation of G-protein coupled receptor protein signalling pathway|regulation of GPCR protein signaling pathway|regulation of G-protein coupled receptor protein signaling pathway biological_process owl:Class GO:0032369 biolink:NamedThing negative regulation of lipid transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl inhibition of lipid transport|down-regulation of lipid transport|downregulation of lipid transport|down regulation of lipid transport biological_process owl:Class GO:0015995 biolink:NamedThing chlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. tmpzr1t_l9r_go_relaxed.owl chlorophyll synthesis|chlorophyll anabolism|chlorophyll biosynthesis|chlorophyll formation MetaCyc:CHLOROPHYLL-SYN biological_process owl:Class GO:1990211 biolink:NamedThing positive regulation by symbiont of jasmonic acid levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the jasmonic acid levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-09T18:58:37Z biological_process owl:Class GO:0052024 biolink:NamedThing positive regulation by symbiont of hormone or growth regulator levels in host The increase by an organism of the levels of hormones or growth regulators in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl stimulation by symbiont of hormone or growth regulator levels in host|positive modulation of hormone or growth regulator levels in host|upregulation by symbiont of hormone or growth regulator levels in host|activation by symbiont of hormone or growth regulator levels in host|up regulation by symbiont of hormone or growth regulator levels in host|positive regulation by organism of hormone or growth regulator levels in other organism involved in symbiotic interaction|up-regulation by symbiont of hormone or growth regulator levels in host GO:0052513 biological_process owl:Class GO:0000062 biolink:NamedThing fatty-acyl-CoA binding Binding to a fatty-acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group. tmpzr1t_l9r_go_relaxed.owl fatty-acyl-coenzyme A binding|fatty-acyl binding https://github.com/geneontology/go-ontology/issues/19443 molecular_function owl:Class GO:0120227 biolink:NamedThing acyl-CoA binding Binding to an acyl-CoA, a thioester that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of any carboxylic acid. tmpzr1t_l9r_go_relaxed.owl acyl-coenzyme A binding|acyl binding https://github.com/geneontology/go-ontology/issues/19243 krc 2020-05-19T16:06:24Z molecular_function owl:Class GO:1900627 biolink:NamedThing negative regulation of arugosin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of arugosin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of arugosin synthesis|inhibition of arugosin biosynthetic process|down regulation of arugosin synthesis|negative regulation of arugosin biosynthesis|down-regulation of arugosin biosynthetic process|down regulation of arugosin formation|down regulation of arugosin biosynthesis|down-regulation of arugosin formation|negative regulation of arugosin anabolism|down-regulation of arugosin synthesis|downregulation of arugosin biosynthetic process|inhibition of arugosin synthesis|negative regulation of arugosin synthesis|inhibition of arugosin biosynthesis|down regulation of arugosin biosynthetic process|inhibition of arugosin formation|downregulation of arugosin anabolism|negative regulation of arugosin formation|down-regulation of arugosin anabolism|down-regulation of arugosin biosynthesis|downregulation of arugosin biosynthesis|down regulation of arugosin anabolism|downregulation of arugosin formation|inhibition of arugosin anabolism di 2012-05-21T05:48:03Z biological_process owl:Class GO:0075302 biolink:NamedThing regulation of basidiospore formation Any process that modulates the frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi Basidiomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071035 biolink:NamedThing nuclear polyadenylation-dependent rRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, including RNA fragments released as part of processing the primary transcript into multiple mature rRNA species, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent rRNA catabolic process krc 2009-07-29T12:42:39Z biological_process owl:Class GO:0045976 biolink:NamedThing negative regulation of mitotic cell cycle, embryonic Any process that stops, prevents or reduces the rate or extent of progression through the embryonic mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl down regulation of progression through embryonic mitotic cell cycle|negative regulation of progression through embryonic mitotic cell cycle|negative regulation of embryonic mitotic cell cycle|down-regulation of progression through embryonic mitotic cell cycle|negative regulation of embryonic mitotic cell cycle progression|inhibition of progression through embryonic mitotic cell cycle|downregulation of progression through embryonic mitotic cell cycle biological_process owl:Class GO:0045930 biolink:NamedThing negative regulation of mitotic cell cycle Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl inhibition of progression through mitotic cell cycle|negative regulation of progression through mitotic cell cycle|down regulation of progression through mitotic cell cycle|down-regulation of progression through mitotic cell cycle|downregulation of progression through mitotic cell cycle|negative regulation of mitotic cell cycle progression biological_process owl:Class GO:1902177 biolink:NamedThing positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of intrinsic apoptotic signaling pathway in response to oxidative stress|positive regulation of intrinsic apoptotic signaling pathway in response to oxidative stress|activation of intrinsic apoptotic signaling pathway in response to oxidative stress|upregulation of intrinsic apoptotic signaling pathway in response to oxidative stress|up-regulation of intrinsic apoptotic signaling pathway in response to oxidative stress pr 2013-05-29T18:30:10Z biological_process owl:Class GO:1902175 biolink:NamedThing regulation of oxidative stress-induced intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of intrinsic apoptotic signaling pathway in response to oxidative stress pr 2013-05-29T18:30:00Z biological_process owl:Class GO:0003192 biolink:NamedThing mitral valve formation The developmental process pertaining to the initial formation of the mitral valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:10:19Z biological_process owl:Class GO:0003190 biolink:NamedThing atrioventricular valve formation The developmental process pertaining to the initial formation of the atrioventricular valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl AV valve formation dph 2009-10-08T01:07:28Z biological_process owl:Class GO:0062085 biolink:NamedThing positive regulation of capsule polysaccharide biosynthetic process Any process that activates, maintains or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-31T16:02:00Z biological_process owl:Class GO:1904847 biolink:NamedThing regulation of cell chemotaxis to fibroblast growth factor Any process that modulates the frequency, rate or extent of cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl rph 2015-12-10T12:04:01Z biological_process owl:Class GO:0050329 biolink:NamedThing tetrahydroxypteridine cycloisomerase activity Catalysis of the reaction: tetrahydroxypteridine = H(+) + xanthine-8-carboxylate. tmpzr1t_l9r_go_relaxed.owl tetrahydroxypteridine lyase (isomerizing) EC:5.5.1.3|RHEA:18097|KEGG_REACTION:R04154|MetaCyc:TETRAHYDROXYPTERIDINE-CYCLOISOMERASE-RXN molecular_function owl:Class GO:0016872 biolink:NamedThing intramolecular lyase activity The catalysis of certain rearrangements of a molecule to break or form a ring. tmpzr1t_l9r_go_relaxed.owl EC:5.5.1.- molecular_function owl:Class GO:0030167 biolink:NamedThing proteoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl proteoglycan breakdown|proteoglycan degradation|proteoglycan catabolism biological_process owl:Class GO:0006029 biolink:NamedThing proteoglycan metabolic process The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl proteoglycan metabolism|proteoglycan sulfate transfer biological_process owl:Class GO:1903946 biolink:NamedThing negative regulation of ventricular cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of ventricular cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl inhibition of ventricular cardiac muscle cell action potential|down-regulation of ventricular cardiac muscle cell action potential|down regulation of ventricular cardiac muscle cell action potential|downregulation of ventricular cardiac muscle cell action potential nc 2015-02-20T14:31:55Z biological_process owl:Class GO:0016260 biolink:NamedThing selenocysteine biosynthetic process The chemical reactions and pathways resulting in the formation of selenocysteine, an essential component of glutathione peroxidase and some other proteins. tmpzr1t_l9r_go_relaxed.owl selenocysteine biosynthesis|selenocysteine formation|selenocysteine synthesis|selenocysteine anabolism biological_process owl:Class GO:0009070 biolink:NamedThing serine family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. tmpzr1t_l9r_go_relaxed.owl serine family amino acid formation|serine family amino acid anabolism|serine family amino acid biosynthesis|serine family amino acid synthesis biological_process owl:Class GO:0034264 biolink:NamedThing isopentenyl adenine metabolic process The chemical reactions and pathways involving the cytokinin 6-isopentenyladenine. tmpzr1t_l9r_go_relaxed.owl isopentenyl adenine metabolism|isopentenyladenine metabolic process biological_process owl:Class GO:0009690 biolink:NamedThing cytokinin metabolic process The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. tmpzr1t_l9r_go_relaxed.owl cytokinin metabolism biological_process owl:Class GO:0070959 biolink:NamedThing negative regulation of neutrophil mediated killing of fungus Any process that decreases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl down-regulation of neutrophil mediated killing of fungus|downregulation of neutrophil mediated killing of fungus|down regulation of neutrophil mediated killing of fungus|inhibition of neutrophil mediated killing of fungus mah 2009-10-01T02:20:17Z biological_process owl:Class GO:1900324 biolink:NamedThing regulation of maltotriulose transport Any process that modulates the frequency, rate or extent of maltotriulose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:48:06Z biological_process owl:Class GO:0061684 biolink:NamedThing chaperone-mediated autophagy The autophagy process which begins when chaperones and co-chaperones recognize a target motif and unfold the substrate protein. The proteins are then transported to the lysosome where they are degraded. tmpzr1t_l9r_go_relaxed.owl CMA|chaperone-assisted selective autophagy|CASA https://github.com/geneontology/go-ontology/issues/20850 Wikipedia:Chaperone-mediated_autophagy dph 2015-03-04T14:35:26Z biological_process owl:Class GO:0030163 biolink:NamedThing protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. tmpzr1t_l9r_go_relaxed.owl protein degradation|protein catabolism|multicellular organismal protein catabolic process|pheromone catabolic process|pheromone catabolism|protein breakdown Wikipedia:Protein_catabolism This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children. GO:0044254 biological_process owl:Class GO:1903431 biolink:NamedThing positive regulation of cell maturation Any process that activates or increases the frequency, rate or extent of cell maturation. tmpzr1t_l9r_go_relaxed.owl activation of functional differentiation|up-regulation of functional differentiation|upregulation of functional differentiation|upregulation of cell maturation|activation of cell maturation|positive regulation of functional differentiation|up regulation of functional differentiation|up-regulation of cell maturation|up regulation of cell maturation jl 2014-09-15T13:31:41Z biological_process owl:Class GO:1905176 biolink:NamedThing positive regulation of vascular associated smooth muscle cell dedifferentiation Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell dedifferentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of vascular smooth muscle cell dedifferentiation|upregulation of vascular smooth muscle cell dedifferentiation|up regulation of vascular smooth muscle cell dedifferentiation|activation of vascular smooth muscle cell dedifferentiation|positive regulation of vascular smooth muscle cell dedifferentiation rph 2016-05-03T12:32:13Z biological_process owl:Class GO:1905174 biolink:NamedThing regulation of vascular associated smooth muscle cell dedifferentiation Any process that modulates the frequency, rate or extent of vascular smooth muscle cell dedifferentiation. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle cell dedifferentiation rph 2016-05-03T12:31:57Z biological_process owl:Class GO:0061135 biolink:NamedThing endopeptidase regulator activity Binds to and modulates the activity of a peptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T01:19:36Z molecular_function owl:Class GO:1905808 biolink:NamedThing positive regulation of synapse pruning Any process that activates or increases the frequency, rate or extent of synapse pruning. tmpzr1t_l9r_go_relaxed.owl regulation of synapse removal|regulation of synapse clearance|regulation of synapse elimination|upregulation of synapse disassembly|up-regulation of synapse disassembly|activation of synapse disassembly|regulation of synapse disassembly|up regulation of synapse disassembly tb 2017-01-11T22:03:33Z biological_process owl:Class GO:0071675 biolink:NamedThing regulation of mononuclear cell migration Any process that modulates the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-16T02:11:53Z biological_process owl:Class GO:0021507 biolink:NamedThing posterior neuropore closure The joining together of the neural folds of the caudal opening of the neural tube. The posterior neuropore appears before the process of neural tube closure is complete. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016331 biolink:NamedThing morphogenesis of embryonic epithelium The process in which the anatomical structures of embryonic epithelia are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016269 biolink:NamedThing O-glycan processing, core 3 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 3 O-glycan structure, GlcNAc-beta-(1->3)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016266 biolink:NamedThing O-glycan processing The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form a core O-glycan structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140446 biolink:NamedThing fumigermin biosynthetic process The chemical reactions and pathways resulting in the formation of fumigermin, an alpha-pyrone secondary metabolite found in some species of fungi such as Aspergillus fumigatus. tmpzr1t_l9r_go_relaxed.owl fumigermin formation|fumigermin anabolism|fumigermin synthesis|fumigermin biosynthesis pg 2020-03-31T12:02:29Z biological_process owl:Class GO:1904833 biolink:NamedThing positive regulation of removal of superoxide radicals Any process that activates or increases the frequency, rate or extent of removal of superoxide radicals. tmpzr1t_l9r_go_relaxed.owl up-regulation of removal of oxygen free radicals|up regulation of removal of superoxide radicals|up-regulation of removal of O2-|positive regulation of cellular detoxification of superoxide radicals|activation of removal of superoxide radicals|upregulation of cellular detoxification of superoxide radicals|positive regulation of removal of O2-|upregulation of removal of O2-|activation of removal of O2-|upregulation of removal of superoxide radicals|upregulation of removal of oxygen free radicals|up regulation of cellular detoxification of superoxide radicals|positive regulation of removal of oxygen free radicals|activation of cellular detoxification of superoxide radicals|activation of removal of oxygen free radicals|up-regulation of removal of superoxide radicals|up regulation of removal of oxygen free radicals|up-regulation of cellular detoxification of superoxide radicals|up regulation of removal of O2- rph 2015-11-24T15:30:26Z biological_process owl:Class GO:2000121 biolink:NamedThing regulation of removal of superoxide radicals Any process that modulates the frequency, rate or extent of removal of superoxide radicals. tmpzr1t_l9r_go_relaxed.owl regulation of removal of O2-|regulation of removal of oxygen free radicals dhl 2010-09-27T05:30:37Z biological_process owl:Class GO:0071072 biolink:NamedThing negative regulation of phospholipid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids. tmpzr1t_l9r_go_relaxed.owl negative regulation of phospholipid anabolism|downregulation of phospholipid biosynthetic process|negative regulation of phospholipid formation|negative regulation of phospholipid synthesis|down regulation of phospholipid biosynthetic process|negative regulation of phospholipid biosynthesis|inhibition of phospholipid biosynthetic process|down-regulation of phospholipid biosynthetic process mah 2009-11-04T03:14:08Z biological_process owl:Class GO:1901018 biolink:NamedThing positive regulation of potassium ion transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of potassium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl upregulation of potassium ion transmembrane transporter activity|up-regulation of potassium transporter activity|up regulation of potassium transporter activity|upregulation of potassium transporter activity|activation of potassium transporter activity|activation of potassium ion transmembrane transporter activity|up regulation of potassium ion transmembrane transporter activity|up-regulation of potassium ion transmembrane transporter activity|positive regulation of potassium transporter activity rl 2012-06-15T01:14:18Z biological_process owl:Class GO:1901733 biolink:NamedThing quercetin catabolic process The chemical reactions and pathways resulting in the breakdown of quercetin. tmpzr1t_l9r_go_relaxed.owl quercetin degradation|quercetin catabolism|quercetin breakdown yaf 2013-01-11T10:25:15Z biological_process owl:Class GO:1901732 biolink:NamedThing quercetin metabolic process The chemical reactions and pathways involving quercetin. tmpzr1t_l9r_go_relaxed.owl quercetin metabolism yaf 2013-01-11T10:25:11Z biological_process owl:Class GO:0031453 biolink:NamedThing positive regulation of heterochromatin assembly Any process that activates or increases the frequency, rate or extent of heterochromatin formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of heterochromatin formation|stimulation of heterochromatin formation|activation of heterochromatin formation|up-regulation of heterochromatin formation|up regulation of heterochromatin formation|upregulation of heterochromatin formation biological_process owl:Class GO:0006883 biolink:NamedThing cellular sodium ion homeostasis Any process involved in the maintenance of an internal steady state of sodium ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030004 biolink:NamedThing cellular monovalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032958 biolink:NamedThing inositol phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl myo-inositol phosphate biosynthetic process|inositol phosphate formation|inositol phosphate anabolism|inositol phosphate biosynthesis|inositol phosphate synthesis biological_process owl:Class GO:0046173 biolink:NamedThing polyol biosynthetic process The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. tmpzr1t_l9r_go_relaxed.owl polyol synthesis|polyhydric alcohol biosynthetic process|polyol formation|polyol biosynthesis|polyol anabolism biological_process owl:Class GO:0033370 biolink:NamedThing maintenance of protein location in mast cell secretory granule A process in which a protein is maintained in a secretory granule in a mast cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protein localization in mast cell secretory granule|mast cell protein retention biological_process owl:Class GO:2000077 biolink:NamedThing negative regulation of type B pancreatic cell development Any process that stops, prevents, or reduces the frequency, rate or extent of pancreatic B cell development. tmpzr1t_l9r_go_relaxed.owl negative regulation of pancreatic B cell development|negative regulation of pancreatic beta cell development tb 2010-08-27T11:21:17Z biological_process owl:Class GO:0010721 biolink:NamedThing negative regulation of cell development Any process that decreases the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035495 biolink:NamedThing regulation of SNARE complex disassembly Any process that modulates the frequency, rate or extent of disassembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T02:56:53Z biological_process owl:Class GO:0010213 biolink:NamedThing non-photoreactive DNA repair A DNA repair process that is involved in repairing UV-induced DNA damage under non-photoreactivating conditions. The mechanism by which this repair process operates has not yet been completely elucidated. tmpzr1t_l9r_go_relaxed.owl light-independent DNA repair biological_process owl:Class GO:0006281 biolink:NamedThing DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. tmpzr1t_l9r_go_relaxed.owl Wikipedia:DNA_repair biological_process owl:Class GO:0031527 biolink:NamedThing filopodium membrane The portion of the plasma membrane surrounding a filopodium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045920 biolink:NamedThing negative regulation of exocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of exocytosis. tmpzr1t_l9r_go_relaxed.owl downregulation of exocytosis|down-regulation of exocytosis|inhibition of exocytosis|down regulation of exocytosis biological_process owl:Class GO:0017157 biolink:NamedThing regulation of exocytosis Any process that modulates the frequency, rate or extent of exocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902338 biolink:NamedThing negative regulation of apoptotic process involved in morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in morphogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of morphogenetic apoptosis|down regulation of morphogenetic apoptosis|down-regulation of apoptosis involved in development|downregulation of apoptotic process involved in morphogenesis|inhibition of morphogenetic apoptosis|negative regulation of apoptosis involved in morphogenesis|negative regulation of morphogenetic apoptosis|negative regulation of apoptosis involved in development|inhibition of apoptosis involved in morphogenesis|inhibition of apoptotic process involved in morphogenesis|inhibition of apoptosis involved in development|downregulation of morphogenetic apoptosis|down regulation of apoptosis involved in morphogenesis|downregulation of apoptosis involved in morphogenesis|down regulation of apoptosis involved in development|downregulation of apoptosis involved in development|down-regulation of apoptotic process involved in morphogenesis|down regulation of apoptotic process involved in morphogenesis|down-regulation of apoptosis involved in morphogenesis sart 2013-07-29T15:03:25Z biological_process owl:Class GO:1902337 biolink:NamedThing regulation of apoptotic process involved in morphogenesis Any process that modulates the frequency, rate or extent of apoptotic process involved in morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of morphogenetic apoptosis|regulation of apoptosis involved in development|regulation of apoptosis involved in morphogenesis sart 2013-07-29T15:03:16Z biological_process owl:Class GO:1904815 biolink:NamedThing negative regulation of protein localization to chromosome, telomeric region Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to chromosome, telomeric region. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localisation to chromosome, telomeric region|down regulation of protein localization to chromosome, telomeric region|down-regulation of protein localisation to chromosome, telomeric region|down-regulation of protein localization to chromosome, telomeric region|inhibition of protein localisation to chromosome, telomeric region|downregulation of protein localization to chromosome, telomeric region|down-regulation of protein localization to telomere|negative regulation of protein localisation to chromosome, telomeric region|downregulation of protein localisation to chromosome, telomeric region|down regulation of protein localization to telomere|inhibition of protein localization to chromosome, telomeric region|inhibition of protein localization to telomere|downregulation of protein localization to telomere|negative regulation of protein localization to telomere nc 2015-11-16T12:18:51Z biological_process owl:Class GO:1900993 biolink:NamedThing (-)-secologanin catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-secologanin. tmpzr1t_l9r_go_relaxed.owl (-)-secologanin degradation|(-)-secologanin breakdown|(-)-secologanin catabolism yaf 2012-06-14T09:51:39Z biological_process owl:Class GO:0046176 biolink:NamedThing aldonic acid catabolic process The chemical reactions and pathways resulting in the breakdown of aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group. tmpzr1t_l9r_go_relaxed.owl aldonic acid degradation|aldonic acid catabolism|aldonic acid breakdown biological_process owl:Class GO:2001242 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of intrinsic apoptotic signalling pathway|regulation of intrinsic apoptosis|regulation of intrinsic apoptotic pathway|regulation of mitochondrial-mediated apoptotic pathway pr 2011-11-24T01:35:56Z biological_process owl:Class GO:0052686 biolink:NamedThing perillic acid-CoA ligase (AMP-forming) activity Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + AMP + diphosphate + perillyl-CoA. tmpzr1t_l9r_go_relaxed.owl perillyl-CoA synthetase activity|perillic acid:CoA ligase (AMP-forming) activity KEGG_REACTION:R06368 molecular_function owl:Class GO:0016405 biolink:NamedThing CoA-ligase activity Catalysis of the reaction: substrate + ATP + CoASH = AMP + diphosphate + substrate-CoA. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-159567|Reactome:R-HSA-159443|Reactome:R-HSA-177157|Reactome:R-HSA-6798345 molecular_function owl:Class GO:0070895 biolink:NamedThing negative regulation of transposon integration Any process that stops, prevents, or reduces the frequency, rate or extent of transposon integration, a process in which a transposable element is incorporated into another DNA molecule. tmpzr1t_l9r_go_relaxed.owl inhibition of transposon integration|down regulation of transposon integration|down-regulation of transposon integration|downregulation of transposon integration mah 2009-09-01T04:20:36Z biological_process owl:Class GO:0070894 biolink:NamedThing regulation of transposon integration Any process that modulates the frequency, rate or extent of regulation of transposon integration, a process in which a transposable element is incorporated into another DNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-01T04:14:09Z biological_process owl:Class GO:0071594 biolink:NamedThing thymocyte aggregation The adhesion of one thymocyte (an immature T cell) to one or more other thymocytes via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl immature T-lymphocyte aggregation|thymic lymphocyte aggregation|immature T cell aggregation|T cell precursor aggregation|immature T-cell aggregation mah 2010-01-29T01:38:49Z biological_process owl:Class GO:0072526 biolink:NamedThing pyridine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyridine and derivative catabolic process|pyridine-containing compound degradation|pyridine-containing compound breakdown|pyridine-containing compound catabolism mah 2011-01-04T03:23:14Z biological_process owl:Class GO:0044270 biolink:NamedThing cellular nitrogen compound catabolic process The chemical reactions and pathways resulting in the breakdown of organic and inorganic nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl nitrogen compound breakdown|nitrogen compound catabolism|nitrogen compound degradation biological_process owl:Class GO:0006876 biolink:NamedThing cellular cadmium ion homeostasis Any process involved in the maintenance of an internal steady state of cadmium ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cadmium homeostasis biological_process owl:Class GO:0055073 biolink:NamedThing cadmium ion homeostasis Any process involved in the maintenance of an internal steady state of cadmium ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl cadmium homeostasis biological_process owl:Class GO:0061014 biolink:NamedThing positive regulation of mRNA catabolic process Any process that increases the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. tmpzr1t_l9r_go_relaxed.owl positive regulation of mRNA decay dph 2010-01-29T01:58:03Z biological_process owl:Class GO:0071301 biolink:NamedThing cellular response to vitamin B1 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to thiamin|cellular response to thiamine mah 2009-12-10T04:32:09Z biological_process owl:Class GO:0010266 biolink:NamedThing response to vitamin B1 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus. tmpzr1t_l9r_go_relaxed.owl response to thiamine|response to thiamin biological_process owl:Class GO:0003691 biolink:NamedThing double-stranded telomeric DNA binding Binding to double-stranded telomere-associated DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003690 biolink:NamedThing double-stranded DNA binding Binding to double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl dsDNA binding molecular_function owl:Class GO:0061297 biolink:NamedThing positive regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis Any process that increases the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl positive regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis|positive regulation of mesenchymal stem cell apoptotic process involved in mesonephric nephron morphogenesis dph 2010-09-06T09:58:59Z biological_process owl:Class GO:0061295 biolink:NamedThing regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis Any process that modulates the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis|regulation of mesenchymal stem cell apoptotic process involved in mesonephric nephron morphogenesis dph 2010-09-06T09:48:56Z biological_process owl:Class GO:1903632 biolink:NamedThing positive regulation of aminoacyl-tRNA ligase activity Any process that activates or increases the frequency, rate or extent of aminoacyl-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of aminoacyl-tRNA synthetase auxiliary protein activity|up regulation of aminoacyl-tRNA synthetase activity|activation of aminoacyl-tRNA ligase activity|up regulation of aminoacyl-tRNA synthetase auxiliary protein activity|positive regulation of aminoacyl-tRNA synthetase activity|upregulation of aminoacyl-tRNA ligase activity|upregulation of aminoacyl-tRNA synthetase activity|up-regulation of aminoacyl-tRNA synthetase activity|activation of aminoacyl-tRNA synthetase activity|positive regulation of aminoacyl-tRNA synthetase auxiliary protein activity|activation of aminoacyl-tRNA synthetase auxiliary protein activity|up-regulation of aminoacyl-tRNA ligase activity|up regulation of aminoacyl-tRNA ligase activity|up-regulation of aminoacyl-tRNA synthetase auxiliary protein activity sl 2014-11-20T00:22:20Z biological_process owl:Class GO:0035497 biolink:NamedThing cAMP response element binding Binding to a cyclic AMP response element (CRE), a short palindrome-containing sequence found in the promoters of genes whose expression is regulated in response to cyclic AMP. tmpzr1t_l9r_go_relaxed.owl cyclic-AMP response element binding|cyclic AMP response element binding|CRE binding|cAMP-responsive element binding|cyclic-AMP-responsive element binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. bf 2010-04-29T09:26:47Z molecular_function owl:Class GO:0047999 biolink:NamedThing hyponitrite reductase activity Catalysis of the reaction: 2 hydroxylamine + 2 NAD(+) = 2 H(+) + hyponitrous acid + 2 NADH. tmpzr1t_l9r_go_relaxed.owl NADH:hyponitrite oxidoreductase activity|hydroxylamine:NAD+ oxidoreductase activity|NADH2:hyponitrite oxidoreductase activity EC:1.7.1.5|RHEA:19337|MetaCyc:HYPONITRITE-REDUCTASE-RXN|KEGG_REACTION:R00023 molecular_function owl:Class GO:0046857 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.7.1.- molecular_function owl:Class GO:1900140 biolink:NamedThing regulation of seedling development Any process that modulates the frequency, rate or extent of seedling development. tmpzr1t_l9r_go_relaxed.owl dhl 2012-03-01T09:26:07Z biological_process owl:Class GO:0048580 biolink:NamedThing regulation of post-embryonic development Any process that modulates the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000097 biolink:NamedThing sulfur amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. tmpzr1t_l9r_go_relaxed.owl sulfur amino acid anabolism|sulphur amino acid biosynthesis|sulphur amino acid biosynthetic process|sulfur amino acid synthesis|sulfur amino acid biosynthesis|sulfur amino acid formation biological_process owl:Class GO:0046514 biolink:NamedThing ceramide catabolic process The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. tmpzr1t_l9r_go_relaxed.owl ceramide degradation|ceramide breakdown|ceramide catabolism biological_process owl:Class GO:0061209 biolink:NamedThing cell proliferation involved in mesonephros development The multiplication or reproduction of cells, resulting in the expansion of the population in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:22:46Z biological_process owl:Class GO:0006978 biolink:NamedThing DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, resulting in the induction of the transcription of p21 (also known as WAF1, CIP1 and SDI1) or any equivalent protein, in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042772 biolink:NamedThing DNA damage response, signal transduction resulting in transcription A cascade of processes initiated in response to the detection of DNA damage, and resulting in the induction of transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019211 biolink:NamedThing phosphatase activator activity Binds to and increases the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051481 biolink:NamedThing negative regulation of cytosolic calcium ion concentration Any process that decreases the concentration of calcium ions in the cytosol. tmpzr1t_l9r_go_relaxed.owl cytoplasmic calcium ion concentration reduction|reduction of cytoplasmic calcium ion concentration|reduction of calcium ion concentration in cytosol|reduction of cytosolic calcium ion concentration|cytosolic calcium ion concentration reduction|reduction of calcium ion concentration in cytoplasm biological_process owl:Class GO:0051480 biolink:NamedThing regulation of cytosolic calcium ion concentration Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion concentration in cytoplasm|cytoplasmic calcium ion homeostasis|calcium ion homeostasis in cytoplasm|regulation of calcium ion concentration in cytosol|regulation of cytoplasmic calcium ion concentration|cytosolic calcium ion concentration regulation|cytoplasmic calcium ion concentration regulation|calcium ion homeostasis in cytosol biological_process owl:Class GO:1900843 biolink:NamedThing regulation of monodictyphenone biosynthetic process Any process that modulates the frequency, rate or extent of monodictyphenone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of monodictyphenone synthesis|regulation of monodictyphenone biosynthesis|regulation of monodictyphenone anabolism|regulation of monodictyphenone formation di 2012-06-07T09:40:38Z biological_process owl:Class GO:0034859 biolink:NamedThing benzothiazole monooxygenase activity Catalysis of the reaction: benzothiazole + 1/2 O2 = 2-hydroxybenzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1292 molecular_function owl:Class GO:2000968 biolink:NamedThing positive regulation of cell wall polysaccharide catabolic process Any process that activates or increases the frequency, rate or extent of cell wall polysaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell wall polysaccharide breakdown tt 2011-08-01T02:30:37Z biological_process owl:Class GO:0009164 biolink:NamedThing nucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl nucleoside degradation|nucleoside breakdown|nucleoside catabolism biological_process owl:Class GO:1901554 biolink:NamedThing response to paracetamol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paracetamol stimulus. tmpzr1t_l9r_go_relaxed.owl response to acetaminophen hp 2012-11-02T09:43:23Z biological_process owl:Class GO:2000632 biolink:NamedThing negative regulation of pre-miRNA processing Any process that stops, prevents or reduces the frequency, rate or extent of pre-microRNA processing. tmpzr1t_l9r_go_relaxed.owl negative regulation of pre-microRNA processing dph 2011-04-18T03:50:19Z biological_process owl:Class GO:1905845 biolink:NamedThing positive regulation of cellular response to gamma radiation Any process that activates or increases the frequency, rate or extent of cellular response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl upregulation of cellular response to gamma ray|activation of cellular response to gamma ray|activation of cellular response to gamma-ray photon|upregulation of cellular response to gamma radiation|up regulation of cellular response to gamma radiation|upregulation of cellular response to gamma-ray photon|up-regulation of cellular response to gamma ray|activation of cellular response to gamma radiation|up-regulation of cellular response to gamma radiation|up-regulation of cellular response to gamma-ray photon|positive regulation of cellular response to gamma-ray photon|up regulation of cellular response to gamma ray|up regulation of cellular response to gamma-ray photon|positive regulation of cellular response to gamma ray rz 2017-01-19T10:24:57Z biological_process owl:Class GO:0106385 biolink:NamedThing dIMP salvage Any process which produces a dIMP from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl hjd 2021-06-11T20:03:19Z biological_process owl:Class GO:0009171 biolink:NamedThing purine deoxyribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside monophosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside monophosphate anabolism|purine deoxyribonucleoside monophosphate synthesis|purine deoxyribonucleoside monophosphate biosynthesis|purine deoxyribonucleoside monophosphate formation biological_process owl:Class GO:0008995 biolink:NamedThing ribonuclease E activity Catalysis of the cleavage of single-stranded RNA that is monophosphorylated at its 5'-end; cleavage occurs predominantly at 5 nucleotides from the 5'-end and in A + U-rich regions, and is blocked by the presence of a 5'-triphosphate group. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.1.26.12-RXN molecular_function owl:Class GO:0004540 biolink:NamedThing ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009246 biolink:NamedThing enterobacterial common antigen biosynthetic process The chemical reactions and pathways resulting in the formation of the enterobacterial common antigen, an acidic polysaccharide containing N-acetyl-D-glucosamine, N-acetyl-D-mannosaminouronic acid, and 4-acetamido-4,6-dideoxy-D-galactose. A major component of the cell wall outer membrane of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl enterobacterial common antigen biosynthesis|enterobacterial common antigen anabolism|enterobacterial common antigen formation|enterobacterial common antigen synthesis MetaCyc:ECASYN-PWY biological_process owl:Class GO:0070598 biolink:NamedThing cell wall (1->3)-alpha-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall 1,3-alpha-glucan anabolism|cell wall alpha-1,3-glucan formation|cell wall alpha-1,3-glucan anabolism|cell wall 1,3-alpha-glucan biosynthetic process|cell wall 1,3-alpha-glucan synthesis|cell wall alpha-1,3-glucan biosynthetic process|cell wall 1,3-alpha-glucan formation|cell wall 1,3-alpha-glucan biosynthesis|cell wall alpha-1,3-glucan synthesis|cell wall alpha-1,3-glucan biosynthesis mah 2009-04-28T04:04:59Z biological_process owl:Class GO:0070592 biolink:NamedThing cell wall polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of a polysaccharide destined to form part of a cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall polysaccharide synthesis|cell wall polysaccharide biosynthesis|cell wall polysaccharide anabolism mah 2009-04-28T01:25:54Z biological_process owl:Class GO:0070607 biolink:NamedThing regulation of cell wall (1->3)-alpha-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall 1,3-alpha-glucan metabolic process|regulation of cell wall 1,3-alpha-glucan metabolism|regulation of cell wall alpha-1,3 glucan metabolic process|regulation of cell wall alpha-1,3 glucan metabolism mah 2009-04-29T01:24:57Z biological_process owl:Class GO:0060462 biolink:NamedThing lung lobe development The biological process whose specific outcome is the progression of a lung lobe from an initial condition to its mature state. This process begins with the formation of a lung lobe by branching morphogenesis and ends with the mature structure. A lung lobe is one of the rounded projections that compose the lung. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021982 biolink:NamedThing pineal gland development The progression of the pineal gland over time from its initial formation until its mature state. The pineal gland is an endocrine gland that secretes melatonin and is involved in circadian rhythms. tmpzr1t_l9r_go_relaxed.owl epiphysis development biological_process owl:Class GO:0048732 biolink:NamedThing gland development The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005141 biolink:NamedThing interleukin-10 receptor binding Binding to an interleukin-10 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-10 receptor ligand|IL-10 molecular_function owl:Class GO:0030858 biolink:NamedThing positive regulation of epithelial cell differentiation Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of epithelial cell differentiation|activation of epithelial cell differentiation|up regulation of epithelial cell differentiation|stimulation of epithelial cell differentiation|up-regulation of epithelial cell differentiation biological_process owl:Class GO:0030856 biolink:NamedThing regulation of epithelial cell differentiation Any process that modulates the frequency, rate or extent of epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071515 biolink:NamedThing genetic imprinting at mating-type locus A genetic imprinting process in which a stable single-strand DNA lesion triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication. tmpzr1t_l9r_go_relaxed.owl mating type determination, imprinting mah 2010-01-06T12:58:56Z biological_process owl:Class GO:1990973 biolink:NamedThing transmembrane actin-associated (TAN) line A linear array of nuclear envelope membrane proteins composed of nesprin-2G and SUN2, which couple the nucleus to moving actin cables, resulting in rearward nuclear transport (away from the leading edge). tmpzr1t_l9r_go_relaxed.owl TAN line hjd 2016-06-22T15:05:09Z cellular_component owl:Class GO:0071274 biolink:NamedThing isoquinoline alkaloid catabolic process The chemical reactions and pathways resulting in the breakdown of isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin. tmpzr1t_l9r_go_relaxed.owl isoquinoline alkaloid breakdown|isoquinoline alkaloid degradation|ipecac alkaloid catabolism|isoquinoline alkaloid catabolism mah 2009-12-10T11:17:49Z biological_process owl:Class GO:1902895 biolink:NamedThing positive regulation of pri-miRNA transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of pri-miRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl up-regulation of pri-miRNA transcription from RNA polymerase II promoter|positive regulation of pri-miRNA transcription from RNA polymerase II promoter|up regulation of pri-miRNA transcription from RNA polymerase II promoter|activation of pri-miRNA transcription from RNA polymerase II promoter|upregulation of pri-miRNA transcription from RNA polymerase II promoter dph 2014-04-08T13:22:20Z biological_process owl:Class GO:1902893 biolink:NamedThing regulation of pri-miRNA transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of pri-miRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl regulation of pri-miRNA transcription from RNA polymerase II promoter dph 2014-04-08T13:22:08Z biological_process owl:Class GO:0035889 biolink:NamedThing otolith tethering The attachment of a developing otolith to the kinocilia of tether cells in the inner ear. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-14T02:28:14Z biological_process owl:Class GO:0014057 biolink:NamedThing positive regulation of acetylcholine secretion, neurotransmission Any process that activates or increases the frequency, rate or extent of the regulated release of acetylcholine. tmpzr1t_l9r_go_relaxed.owl up regulation of acetylcholine secretion|upregulation of acetylcholine secretion|stimulation of acetylcholine secretion|activation of acetylcholine secretion|up-regulation of acetylcholine secretion biological_process owl:Class GO:0051954 biolink:NamedThing positive regulation of amine transport Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl upregulation of amine transport|activation of amine transport|up-regulation of amine transport|stimulation of amine transport|up regulation of amine transport biological_process owl:Class GO:0045612 biolink:NamedThing positive regulation of hemocyte differentiation Any process that activates or increases the frequency, rate or extent of hemocyte differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of hemocyte differentiation|up regulation of hemocyte differentiation|positive regulation of arthropod blood cell differentiation|upregulation of hemocyte differentiation|up-regulation of hemocyte differentiation|activation of hemocyte differentiation biological_process owl:Class GO:1905946 biolink:NamedThing negative regulation of response to calcium ion Any process that stops, prevents or reduces the frequency, rate or extent of response to calcium ion. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to Ca2+ ion|negative regulation of response to Ca2+ ion|down regulation of response to calcium ion|downregulation of response to calcium ion|downregulation of response to Ca2+ ion|inhibition of response to calcium ion|inhibition of response to Ca2+ ion|down-regulation of response to calcium ion|down regulation of response to Ca2+ ion bc 2017-02-13T10:56:41Z biological_process owl:Class GO:0090209 biolink:NamedThing negative regulation of triglyceride metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-23T10:35:06Z biological_process owl:Class GO:0070520 biolink:NamedThing alpha4-beta1 integrin-CD81 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD81, a member of the tetraspan family. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-CD81 complex cellular_component owl:Class GO:0044206 biolink:NamedThing UMP salvage Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl UMP biosynthesis via nucleoside salvage pathway|UMP biosynthetic process via nucleoside salvage pathway jl 2009-10-21T11:32:33Z biological_process owl:Class GO:0072734 biolink:NamedThing cellular response to staurosporine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a staurosporine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0072733 biolink:NamedThing response to staurosporine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a staurosporine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-07-17T10:32:28Z biological_process owl:Class GO:0043288 biolink:NamedThing apocarotenoid metabolic process The chemical reactions and pathways involving apocarotenoids, a class of compounds derived from the oxidative cleavage of carotenoids, many of which are biologically important e.g. retinal and abscisic acid. tmpzr1t_l9r_go_relaxed.owl apocarotenoid metabolism|apo carotenoid metabolic process biological_process owl:Class GO:0006720 biolink:NamedThing isoprenoid metabolic process The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. tmpzr1t_l9r_go_relaxed.owl polyterpene metabolic process|polyisoprenoid metabolic process|polyterpene metabolism|isoprenoid metabolism|polyisoprenoid metabolism GO:0016096 biological_process owl:Class GO:0032642 biolink:NamedThing regulation of chemokine production Any process that modulates the frequency, rate, or extent of chemokine production. tmpzr1t_l9r_go_relaxed.owl regulation of chemokine secretion|regulation of chemokine biosynthetic process 2009-12-18T11:28:00Z GO:0090196|GO:0045073 biological_process owl:Class GO:0002035 biolink:NamedThing brain renin-angiotensin system The process in which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001976 biolink:NamedThing nervous system process involved in regulation of systemic arterial blood pressure The regulation of blood pressure mediated by detection of stimuli and a neurological response. tmpzr1t_l9r_go_relaxed.owl neurological system process involved in regulation of systemic arterial blood pressure|fast control of arterial pressure|blood pressure regulation by neurological process|neurological process involved in regulation of systemic arterial blood pressure biological_process owl:Class GO:0150034 biolink:NamedThing distal axon That part of an axon close to and including the growth cone or the axon terminus. tmpzr1t_l9r_go_relaxed.owl distal part of the axon|distal part of axon bc 2018-02-19T15:04:24Z cellular_component owl:Class GO:0060617 biolink:NamedThing positive regulation of mammary placode formation by mesenchymal-epithelial signaling Any process that initiates the formation of a mammary placode through a mechanism that mediates the transfer of information from a mesenchymal cell to an epithelial cell resulting in the epithelial cell adopting the identity of a cell of the mammary placode. tmpzr1t_l9r_go_relaxed.owl positive regulation of mammary placode formation by mesenchymal-epithelial signalling dph 2009-05-18T09:16:07Z biological_process owl:Class GO:0010028 biolink:NamedThing xanthophyll cycle A cyclic series of interconversions involving three xanthophylls, violoxanthin, antheraxanthin, and zeaxanthin. The xanthophyll cycle is involved in regulating energy dissipation in light harvesting complex II. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-1141|Wikipedia:Xanthophyll#Xanthophyll_cycle biological_process owl:Class GO:0018589 biolink:NamedThing di-n-butyltin dioxygenase activity Catalysis of the reaction: dibutyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutylbutyltin. tmpzr1t_l9r_go_relaxed.owl DBT dioxygenase activity UM-BBD_reactionID:r0645 molecular_function owl:Class GO:0006552 biolink:NamedThing leucine catabolic process The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl leucine catabolism|leucine breakdown|leucine degradation MetaCyc:LEU-DEG2-PWY biological_process owl:Class GO:0009083 biolink:NamedThing branched-chain amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. tmpzr1t_l9r_go_relaxed.owl branched chain family amino acid breakdown|branched chain family amino acid degradation|branched chain family amino acid catabolic process|branched chain family amino acid catabolism biological_process owl:Class GO:0106220 biolink:NamedThing pyocyanine biosynthetic process The chemical reactions and pathways resulting in the formation of pyrocyanin, an iminium betaine that is 5-methylphenazin-5-ium which is substituted at position 1 by an oxidanidyl group. tmpzr1t_l9r_go_relaxed.owl pyocyanin biosynthetic process hjd 2019-08-19T17:15:48Z biological_process owl:Class GO:1900085 biolink:NamedThing negative regulation of peptidyl-tyrosine autophosphorylation Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-tyrosine autophosphorylation. tmpzr1t_l9r_go_relaxed.owl down regulation of receptor tyrosine kinase autophosphorylation|down regulation of peptidyl-tyrosine autophosphorylation|inhibition of tyrosine autophosphorylation|downregulation of peptidyl-tyrosine autophosphorylation|inhibition of receptor tyrosine kinase autophosphorylation|downregulation of receptor tyrosine kinase autophosphorylation|inhibition of peptidyl-tyrosine autophosphorylation|down-regulation of tyrosine autophosphorylation|down-regulation of peptidyl-tyrosine autophosphorylation|down-regulation of receptor tyrosine kinase autophosphorylation|negative regulation of receptor tyrosine kinase autophosphorylation|negative regulation of tyrosine autophosphorylation|down regulation of tyrosine autophosphorylation|downregulation of tyrosine autophosphorylation bf 2012-02-03T10:17:12Z biological_process owl:Class GO:0031953 biolink:NamedThing negative regulation of protein autophosphorylation Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein amino acid autophosphorylation|downregulation of protein amino acid autophosphorylation|negative regulation of protein amino acid autophosphorylation|down regulation of protein amino acid autophosphorylation|inhibition of protein amino acid autophosphorylation biological_process owl:Class GO:0032303 biolink:NamedThing regulation of icosanoid secretion Any process that modulates the frequency, rate or extent of the controlled release of an icosanoid from a cell. tmpzr1t_l9r_go_relaxed.owl regulation of eicosanoid secretion biological_process owl:Class GO:0044070 biolink:NamedThing regulation of anion transport Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072155 biolink:NamedThing epithelial cell migration involved in nephron tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to nephron tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:21:25Z biological_process owl:Class GO:1900143 biolink:NamedThing positive regulation of oligodendrocyte apoptotic process Any process that activates or increases the frequency, rate or extent of oligodendrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl up regulation of oligodendrocyte apoptotic process|up regulation of oligodendrocyte apoptosis|activation of oligodendrocyte apoptotic process|activation of oligodendrocyte apoptosis|upregulation of oligodendrocyte apoptotic process|upregulation of oligodendrocyte apoptosis|up-regulation of oligodendrocyte apoptosis|positive regulation of oligodendrocyte apoptosis|up-regulation of oligodendrocyte apoptotic process yaf 2012-03-06T10:22:54Z biological_process owl:Class GO:0034352 biolink:NamedThing positive regulation of glial cell apoptotic process Any process that activates or increases the frequency, rate, or extent of glial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of glial cell apoptosis|stimulation of glial cell apoptosis|positive regulation of glial cell apoptosis|upregulation of glial cell apoptosis|activation of glial cell apoptosis|up regulation of glial cell apoptosis biological_process owl:Class GO:0071806 biolink:NamedThing protein transmembrane transport The process in which a protein is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl protein membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-09-03T02:54:26Z biological_process owl:Class GO:0047927 biolink:NamedThing gibberellin-44 dioxygenase activity Catalysis of the reaction: gibberellin 44 + 2-oxoglutarate + O2 = gibberellin 19 + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl gibberellin A44 oxidase activity|(gibberellin-44), 2-oxoglutarate:oxygen oxidoreductase activity|(gibberellin-44),2-oxoglutarate:oxygen oxidoreductase activity|oxygenase, gibberellin A44 oxidase activity EC:1.14.11.12|MetaCyc:RXN1F-168|RHEA:16033 molecular_function owl:Class GO:0070722 biolink:NamedThing Tle3-Aes complex A transcriptional repressor complex that consists of a heterodimer of the proteins Tle3 (also known as Grg3b) and Aes (Grg5), which are homologs of the Drosophila groucho gene product. tmpzr1t_l9r_go_relaxed.owl Grg3b-Grg5 complex mah 2009-06-10T05:45:28Z cellular_component owl:Class GO:0090571 biolink:NamedThing RNA polymerase II transcription repressor complex A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-09T13:26:16Z cellular_component owl:Class GO:1901685 biolink:NamedThing glutathione derivative metabolic process The chemical reactions and pathways involving glutathione derivative. tmpzr1t_l9r_go_relaxed.owl glutathione derivative metabolism pr 2012-12-05T11:57:11Z biological_process owl:Class GO:1903556 biolink:NamedThing negative regulation of tumor necrosis factor superfamily cytokine production Any process that stops, prevents or reduces the frequency, rate or extent of tumor necrosis factor superfamily cytokine production. tmpzr1t_l9r_go_relaxed.owl downregulation of tumor necrosis factor superfamily cytokine production|downregulation of TNFSF cytokine production|down regulation of TNF superfamily production|down-regulation of tumor necrosis factor superfamily cytokine production|down regulation of TNFSF cytokine production|inhibition of TNFSF cytokine production|down-regulation of TNFSF cytokine production|down regulation of tumor necrosis factor superfamily cytokine production|inhibition of TNF superfamily production|inhibition of tumor necrosis factor superfamily cytokine production|negative regulation of TNFSF cytokine production|negative regulation of TNF superfamily production|down-regulation of TNF superfamily production|downregulation of TNF superfamily production pga 2014-10-21T10:26:14Z biological_process owl:Class GO:1904518 biolink:NamedThing protein localization to cytoplasmic microtubule plus-end A process in which a protein is transported to, or maintained in, a location at a cytoplasmic microtubule plus-end. tmpzr1t_l9r_go_relaxed.owl protein localisation to cytoplasmic microtubule plus-end|protein localisation in cytoplasmic microtubule plus-end|protein localization in cytoplasmic microtubule plus-end mah 2015-07-29T14:46:05Z biological_process owl:Class GO:1905755 biolink:NamedThing protein localization to cytoplasmic microtubule A process in which a protein is transported to, or maintained in, a location within a cytoplasmic microtubule. tmpzr1t_l9r_go_relaxed.owl protein localisation to cytoplasmic microtubule mah 2016-12-12T15:31:07Z biological_process owl:Class GO:0030515 biolink:NamedThing snoRNA binding Binding to a small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900908 biolink:NamedThing regulation of olefin metabolic process Any process that modulates the frequency, rate or extent of olefin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of olefin metabolism tt 2012-06-13T04:18:29Z biological_process owl:Class GO:0018216 biolink:NamedThing peptidyl-arginine methylation The addition of a methyl group to an arginine residue in a protein. tmpzr1t_l9r_go_relaxed.owl GO:0018017 biological_process owl:Class GO:0036113 biolink:NamedThing very long-chain fatty-acyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of very long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a medium-chain fatty-acyl group. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very long-chain fatty-acyl-CoA catabolism|very long-chain fatty-acyl-CoA breakdown|very long-chain fatty-acyl-CoA degradation bf 2012-02-15T11:16:11Z biological_process owl:Class GO:0036115 biolink:NamedThing fatty-acyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of a fatty-acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group. tmpzr1t_l9r_go_relaxed.owl fatty-acyl-CoA catabolism|fatty-acyl-CoA degradation|fatty-acyl-CoA breakdown bf 2012-02-15T11:26:25Z biological_process owl:Class GO:0002612 biolink:NamedThing positive regulation of plasmacytoid dendritic cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of plasmacytoid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl up-regulation of plasmacytoid dendritic cell antigen processing and presentation|up regulation of plasmacytoid dendritic cell antigen processing and presentation|activation of plasmacytoid dendritic cell antigen processing and presentation|upregulation of plasmacytoid dendritic cell antigen processing and presentation|stimulation of plasmacytoid dendritic cell antigen processing and presentation biological_process owl:Class GO:0010831 biolink:NamedThing positive regulation of myotube differentiation Any process that activates, maintains or increases the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901416 biolink:NamedThing regulation of response to ethanol Any process that modulates the frequency, rate or extent of response to ethanol. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T16:48:24Z biological_process owl:Class GO:0140266 biolink:NamedThing Woronin body Peroxisome-derived dense-core vesicle that seals septal pores upon hyphal lysis to prevent excessive cytoplasmic loss. It is specific to several genera of filamentous ascomycetes. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-24T14:53:37Z cellular_component owl:Class GO:0042579 biolink:NamedThing microbody Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Microbody cellular_component owl:Class GO:0002903 biolink:NamedThing negative regulation of B cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of B cell apoptosis|down regulation of B cell apoptosis|down-regulation of B cell apoptosis|inhibition of B cell apoptosis|downregulation of B cell apoptosis biological_process owl:Class GO:0106091 biolink:NamedThing glial cell projection elongation The process of creating an elongation or projection from a glial cell. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-26T19:40:19Z biological_process owl:Class GO:0048858 biolink:NamedThing cell projection morphogenesis The process in which the anatomical structures of a cell projection are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014873 biolink:NamedThing response to muscle activity involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl response to fatigue|response to muscle activity involved in regulation of muscle plasticity biological_process owl:Class GO:0014874 biolink:NamedThing response to stimulus involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. This occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl response to stimulus involved in regulation of muscle plasticity biological_process owl:Class GO:0051134 biolink:NamedThing negative regulation of NK T cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer T cell activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of NT cell activation|negative regulation of natural killer T cell activation|negative regulation of natural T cell activation|negative regulation of NK T-lymphocyte activation|down regulation of NK T cell activation|negative regulation of NK T-cell activation|inhibition of NK T cell activation|down-regulation of NK T cell activation|negative regulation of NKT cell activation|negative regulation of NK T lymphocyte activation|downregulation of NK T cell activation biological_process owl:Class GO:0051133 biolink:NamedThing regulation of NK T cell activation Any process that modulates the frequency, rate or extent of natural killer T cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of natural T cell activation|regulation of NT cell activation|regulation of natural killer T cell activation|regulation of NK T-cell activation|regulation of NKT cell activation|regulation of NK T-lymphocyte activation|regulation of NK T lymphocyte activation biological_process owl:Class GO:0070556 biolink:NamedThing TAF4B-containing transcription factor TFIID complex A transcription factor TFIID complex that contains the TBP-associated factor TAF4B (also known as TAFII105 in human), a cell-type-specific variant of TAF4. tmpzr1t_l9r_go_relaxed.owl TFIID complex, B-cell specific cellular_component owl:Class GO:0005669 biolink:NamedThing transcription factor TFIID complex A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000661 biolink:NamedThing positive regulation of interleukin-1-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of interleukin-1-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-1 alpha-mediated signaling pathway|positive regulation of interleukin-1-mediated signalling pathway|positive regulation of IL-1-mediated signaling pathway|positive regulation of IL-1 alpha-mediated signaling pathway|positive regulation of IL-1 beta-mediated signaling pathway|positive regulation of interleukin-1 beta-mediated signaling pathway dph 2011-05-03T07:13:40Z biological_process owl:Class GO:0044196 biolink:NamedThing host cell nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic host cells. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-20T02:37:07Z cellular_component owl:Class GO:0044094 biolink:NamedThing host cell nuclear part Any constituent part of a host cell's nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. The host is the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. jl 2009-04-22T01:59:14Z cellular_component owl:Class GO:0050594 biolink:NamedThing tabersonine 16-hydroxylase activity Catalysis of the reaction: H(+) + NADPH + O(2) + tabersonine = 16-hydroxytabersonine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl tabersonine,NADPH:oxygen oxidoreductase (16-hydroxylating) EC:1.14.14.103|KEGG_REACTION:R05855|RHEA:14133|MetaCyc:1.14.13.73-RXN molecular_function owl:Class GO:0140146 biolink:NamedThing calcium ion import into vacuole The directed movement of calcium cations into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl pg 2017-12-13T15:15:29Z biological_process owl:Class GO:0034486 biolink:NamedThing vacuolar transmembrane transport The process in which a solute is transported from one side of the vacuolar membrane to the other. tmpzr1t_l9r_go_relaxed.owl vacuolar membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0035598 biolink:NamedThing N6-threonylcarbomyladenosine methylthiotransferase activity Catalysis of the methylthiolation (-SCH3 addition) at the C2 of the adenosine ring of N6-threonylcarbomyladenosine (t6A) in tRNA, to form 2-methylthio-N6-threonylcarbamoyladenosine (ms2t6A). tmpzr1t_l9r_go_relaxed.owl t6A methylthiotransferase activity Reactome:R-HSA-6786571 bf 2010-11-12T01:28:32Z molecular_function owl:Class GO:0035596 biolink:NamedThing methylthiotransferase activity Catalysis of the addition of a methylthioether group (-SCH3) to a nucleic acid or protein acceptor. tmpzr1t_l9r_go_relaxed.owl MTTase bf 2010-11-12T01:24:38Z molecular_function owl:Class GO:0050786 biolink:NamedThing RAGE receptor binding Binding to a RAGE receptor, the receptor for advanced glycation end-products. tmpzr1t_l9r_go_relaxed.owl advanced glycation end-product receptor binding molecular_function owl:Class GO:0046378 biolink:NamedThing enterobacterial common antigen metabolic process The chemical reactions and pathways involving enterobacterial common antigen, an acidic polysaccharide containing N-acetyl-D-glucosamine, N-acetyl-D-mannosaminouronic acid, and 4-acetamido-4,6-dideoxy-D-galactose. A major component of the cell wall outer membrane of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl enterobacterial common antigen metabolism biological_process owl:Class GO:0150101 biolink:NamedThing regulation of microtubule anchoring at centrosome Any process that modulates the frequency, rate or extent of microtubule anchoring at centrosome. tmpzr1t_l9r_go_relaxed.owl bc 2019-04-17T11:24:52Z biological_process owl:Class GO:1904856 biolink:NamedThing cytolytic granule lumen Any cytoplasmic membrane-bounded vesicle lumen that is part of a cytolytic granule. tmpzr1t_l9r_go_relaxed.owl cytoplasmic membrane-bounded vesicle lumen of cytolytic granule|cytoplasmic membrane-enclosed vesicle lumen of cytolytic granule|cytolytic granule cytoplasmic membrane-bounded vesicle lumen mec 2015-12-15T12:51:17Z cellular_component owl:Class GO:0005775 biolink:NamedThing vacuolar lumen The volume enclosed within the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003019 biolink:NamedThing central nervous system control of baroreceptor feedback The neurological process in which nerve impulses arising in the aorta or the carotid sinuses travel to the medulla and reach the nucleus of tractus solaris. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035490 biolink:NamedThing regulation of leukotriene production involved in inflammatory response Any process that modulates the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T10:49:22Z biological_process owl:Class GO:2000847 biolink:NamedThing negative regulation of corticosteroid hormone secretion Any process that stops, prevents or reduces the frequency, rate or extent of corticosteroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of corticosteroid secretion bf 2011-07-26T08:43:42Z biological_process owl:Class GO:2000832 biolink:NamedThing negative regulation of steroid hormone secretion Any process that stops, prevents or reduces the frequency, rate or extent of steroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:38:50Z biological_process owl:Class GO:0004180 biolink:NamedThing carboxypeptidase activity Catalysis of the hydrolysis of a single C-terminal amino acid residue from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 RHEA:28783|Reactome:R-HSA-1247910 molecular_function owl:Class GO:0008238 biolink:NamedThing exopeptidase activity Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both. tmpzr1t_l9r_go_relaxed.owl exoprotease activity molecular_function owl:Class GO:0010641 biolink:NamedThing positive regulation of platelet-derived growth factor receptor signaling pathway Any process that increases the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of platelet-derived growth factor receptor signalling pathway biological_process owl:Class GO:0010640 biolink:NamedThing regulation of platelet-derived growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of platelet-derived growth factor receptor signalling pathway biological_process owl:Class GO:0140510 biolink:NamedThing mitotic nuclear bridge A narrow constricted region of the nucleus that forms around the anaphase spindle during closed mitosis, and connects the main portions of the newly forming daughter nuclei. tmpzr1t_l9r_go_relaxed.owl nuclear bridge pg 2020-09-07T09:59:46Z cellular_component owl:Class GO:0050950 biolink:NamedThing positive regulation of late stripe melanocyte differentiation Any process that activates or increases the frequency, rate or extent of late stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of late stripe melanocyte differentiation|positive regulation of late stripe melanophore differentiation|upregulation of late stripe melanocyte differentiation|up regulation of late stripe melanocyte differentiation|activation of late stripe melanocyte differentiation|up-regulation of late stripe melanocyte differentiation biological_process owl:Class GO:0050940 biolink:NamedThing regulation of late stripe melanocyte differentiation Any process that modulates the frequency, rate or extent of late stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of late stripe melanophore differentiation biological_process owl:Class GO:0043976 biolink:NamedThing histone H3-K79 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 79 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 acetylation at K79|histone H3K79 acetylation biological_process owl:Class GO:0046651 biolink:NamedThing lymphocyte proliferation The expansion of a lymphocyte population by cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006786 biolink:NamedThing heme C biosynthetic process The chemical reactions and pathways resulting in the formation of heme c, a derivative of heme found in cytochromes c, b4, and f. tmpzr1t_l9r_go_relaxed.owl heme C formation|heme C biosynthesis|heme C anabolism|heme C synthesis|haem C biosynthetic process|haem C biosynthesis biological_process owl:Class GO:0046162 biolink:NamedThing heme C metabolic process The chemical reactions and pathways involving heme c, a derivative of heme found in cytochromes c, b4, and f. tmpzr1t_l9r_go_relaxed.owl haem C metabolism|heme C metabolism|haem C metabolic process biological_process owl:Class GO:0009964 biolink:NamedThing negative regulation of flavonoid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. tmpzr1t_l9r_go_relaxed.owl down-regulation of flavonoid biosynthetic process|negative regulation of flavonoid formation|down regulation of flavonoid biosynthetic process|negative regulation of flavonoid anabolism|inhibition of flavonoid biosynthetic process|negative regulation of flavonoid biosynthesis|negative regulation of flavonoid synthesis|downregulation of flavonoid biosynthetic process biological_process owl:Class GO:0033183 biolink:NamedThing negative regulation of histone ubiquitination Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of a ubiquitin group to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033189 biolink:NamedThing response to vitamin A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus. tmpzr1t_l9r_go_relaxed.owl response to retinol biological_process owl:Class GO:0045582 biolink:NamedThing positive regulation of T cell differentiation Any process that activates or increases the frequency, rate or extent of T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of T cell development|upregulation of T cell differentiation|positive regulation of T-lymphocyte differentiation|positive regulation of T-cell differentiation|stimulation of T cell differentiation|activation of T cell differentiation|up-regulation of T cell differentiation|up regulation of T cell differentiation|positive regulation of T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0047934 biolink:NamedThing glucose 1-dehydrogenase (NAD+) activity Catalysis of the reaction: D-glucose + NAD+ = D-glucono-1,5-lactone + NADH. tmpzr1t_l9r_go_relaxed.owl D-glucose:NAD oxidoreductase activity|D-glucose:NAD+ 1-oxidoreductase activity|D-aldohexose dehydrogenase activity EC:1.1.1.118|MetaCyc:GLUCOSE-1-DEHYDROGENASE-NAD+-RXN|RHEA:14293 molecular_function owl:Class GO:0047936 biolink:NamedThing glucose 1-dehydrogenase [NAD(P)] activity Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl beta-D-glucose:NAD(P)+ 1-oxidoreductase activity|hexose phosphate dehydrogenase activity|D-glucose dehydrogenase (NAD(P)) EC:1.1.1.47|MetaCyc:GLUCOSE-1-DEHYDROGENASE-RXN molecular_function owl:Class GO:1904075 biolink:NamedThing positive regulation of trophectodermal cell proliferation Any process that activates or increases the frequency, rate or extent of trophectodermal cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of trophectodermal cell proliferation|up-regulation of trophectoderm cell proliferation|upregulation of trophectoderm cell proliferation|positive regulation of trophectoderm cell proliferation|upregulation of trophectodermal cell proliferation|up regulation of trophectoderm cell proliferation|up regulation of trophectodermal cell proliferation|activation of trophectoderm cell proliferation|activation of trophectodermal cell proliferation tb 2015-03-20T16:56:08Z biological_process owl:Class GO:0030854 biolink:NamedThing positive regulation of granulocyte differentiation Any process that activates or increases the frequency, rate or extent of granulocyte differentiation. tmpzr1t_l9r_go_relaxed.owl activation of granulocyte differentiation|up-regulation of granulocyte differentiation|stimulation of granulocyte differentiation|up regulation of granulocyte differentiation|upregulation of granulocyte differentiation biological_process owl:Class GO:0006648 biolink:NamedThing dihydrosphingosine-1-P pathway A phosphatidylethanolamine biosynthetic process that proceeds via the enzymatic action of dihydrosphingosine phosphate lyase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006646 biolink:NamedThing phosphatidylethanolamine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine biosynthesis|phosphatidylethanolamine formation|phosphatidylethanolamine synthesis|phosphatidylethanolamine anabolism biological_process owl:Class GO:0043132 biolink:NamedThing NAD transport The directed movement of nicotinamide adenine dinucleotide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore; transport may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl oxidized nicotinamide adenine dinucleotide transport|NAD (oxidized) transport|reduced NAD transport|oxidized NAD transport|reduced nicotinamide adenine dinucleotide transport|NAD (reduced) transport|NADH transport|nicotinamide adenine dinucleotide transport biological_process owl:Class GO:0006862 biolink:NamedThing nucleotide transport The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061314 biolink:NamedThing Notch signaling involved in heart development The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl Notch signalling involved in heart development dph 2010-09-24T08:25:22Z biological_process owl:Class GO:0043858 biolink:NamedThing arginine:ornithine antiporter activity Catalysis of the reaction: arginine(out) + ornithine(in) = arginine(in) + ornithine(out). tmpzr1t_l9r_go_relaxed.owl ArcD|arginine-ornithine antiporter activity|arginine/ornithine antiporter activity molecular_function owl:Class GO:0019296 biolink:NamedThing coenzyme M metabolic process The chemical reactions and pathways involving coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes. tmpzr1t_l9r_go_relaxed.owl coenzyme M metabolism biological_process owl:Class GO:0035894 biolink:NamedThing positive regulation of platelet aggregation in other organism Any process in which an organism activates, maintains or increases the frequency, rate or extent of platelet aggregation in another organism. tmpzr1t_l9r_go_relaxed.owl upregulation of platelet aggregation in other organism|up-regulation of platelet aggregation in other organism bf 2011-06-15T02:28:46Z biological_process owl:Class GO:1901731 biolink:NamedThing positive regulation of platelet aggregation Any process that activates or increases the frequency, rate or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl activation of platelet aggregation|upregulation of blood platelet aggregation|activation of thrombocyte aggregation|upregulation of thrombocyte aggregation|activation of blood platelet aggregation|up-regulation of thrombocyte aggregation|positive regulation of thrombocyte aggregation|positive regulation of blood platelet aggregation|upregulation of platelet aggregation|up regulation of thrombocyte aggregation|up-regulation of platelet aggregation|up regulation of platelet aggregation|up regulation of blood platelet aggregation|up-regulation of blood platelet aggregation pr 2013-01-10T13:25:39Z biological_process owl:Class GO:0080038 biolink:NamedThing positive regulation of cytokinin-activated signaling pathway Any process that activates or increases the frequency, rate or extent of cytokinin signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytokinin mediated signalling|positive regulation of cytokinin mediated signaling pathway biological_process owl:Class GO:0080036 biolink:NamedThing regulation of cytokinin-activated signaling pathway Any process that modulates the frequency, rate or extent of cytokinin signaling. tmpzr1t_l9r_go_relaxed.owl regulation of cytokinin mediated signalling|regulation of cytokinin mediated signaling pathway biological_process owl:Class GO:0047028 biolink:NamedThing 6-pyruvoyltetrahydropterin 2'-reductase activity Catalysis of the reaction: NADP+ + 6-lactoyl-5,6,7,8-tetrahydropterin = NADPH + H+ + 6-pyruvoyltetrahydropterin. tmpzr1t_l9r_go_relaxed.owl 6-pyruvoyl-tetrahydropterin 2'-reductase activity|6-pyruvoyltetrahydropterin reductase activity|6-lactoyl-5,6,7,8-tetrahydropterin:NADP+ 2'-oxidoreductase activity|pyruvoyl-tetrahydropterin reductase activity|6-pyruvoyl tetrahydropterin (2'-oxo)reductase activity|6PPH4(2'-oxo) reductase activity EC:1.1.1.220|RHEA:11772|MetaCyc:1.1.1.220-RXN molecular_function owl:Class GO:1903482 biolink:NamedThing positive regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly Any process that activates or increases the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|up-regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|up regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|positive regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|up regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly|positive regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|up-regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly|activation of actin filament organization involved in mitotic actomyosin contractile ring assembly|up regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|upregulation of actin filament organization involved in mitotic actomyosin contractile ring assembly|upregulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|upregulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|activation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|activation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis vw 2014-09-23T16:03:59Z biological_process owl:Class GO:1903480 biolink:NamedThing regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly Any process that modulates the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis vw 2014-09-23T16:03:42Z biological_process owl:Class GO:0002878 biolink:NamedThing negative regulation of acute inflammatory response to non-antigenic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of acute inflammatory response to non-antigenic stimulus|downregulation of acute inflammatory response to non-antigenic stimulus|down regulation of acute inflammatory response to non-antigenic stimulus|inhibition of acute inflammatory response to non-antigenic stimulus biological_process owl:Class GO:0002674 biolink:NamedThing negative regulation of acute inflammatory response Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl downregulation of acute inflammatory response|down regulation of acute inflammatory response|inhibition of acute inflammatory response|down-regulation of acute inflammatory response biological_process owl:Class GO:1900609 biolink:NamedThing F-9775A metabolic process The chemical reactions and pathways involving F-9775A. tmpzr1t_l9r_go_relaxed.owl F-9775A metabolism di 2012-05-15T07:02:27Z biological_process owl:Class GO:2001141 biolink:NamedThing regulation of RNA biosynthetic process Any process that modulates the frequency, rate or extent of RNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of RNA biosynthesis|regulation of RNA formation|regulation of RNA synthesis|regulation of RNA anabolism dph 2011-10-17T11:36:25Z biological_process owl:Class GO:1905125 biolink:NamedThing positive regulation of glucosylceramidase activity Any process that activates or increases the frequency, rate or extent of glucosylceramidase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of glucocerebrosidase activity|upregulation of beta-glucocerebrosidase activity|upregulation of psychosine hydrolase activity|activation of psychosine hydrolase activity|up-regulation of beta-D-glucocerebrosidase activity|positive regulation of GlcCer-beta-glucosidase activity|activation of beta-D-glucocerebrosidase activity|activation of beta-glucocerebrosidase activity|upregulation of glucosylsphingosine beta-D-glucosidase activity|upregulation of beta-glucosylceramidase activity|activation of glucosylsphingosine beta-D-glucosidase activity|up regulation of beta-glucosylceramidase activity|positive regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|upregulation of glucosphingosine glucosylhydrolase activity|up-regulation of ceramide glucosidase activity|positive regulation of GCase activity|up-regulation of glucosylsphingosine beta-D-glucosidase activity|up regulation of GlcCer-beta-glucosidase activity|activation of glucosylcerebrosidase activity|positive regulation of beta-glucosylceramidase activity|up regulation of ceramide glucosidase activity|positive regulation of glucosphingosine glucosylhydrolase activity|upregulation of glucosylsphingosine beta-glucosidase activity|up regulation of glucosylceramidase activity|up-regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|activation of GlcCer-beta-glucosidase activity|upregulation of acid beta-glucosidase activity|up regulation of glucosylsphingosine beta-glucosidase activity|up-regulation of GlcCer-beta-glucosidase activity|positive regulation of glucocerebrosidase activity|up regulation of beta-D-glucocerebrosidase activity|upregulation of beta-D-glucocerebrosidase activity|up-regulation of glucosylceramidase activity|upregulation of ceramide glucosidase activity|up-regulation of glucosylcerebrosidase activity|up-regulation of beta-glucocerebrosidase activity|up-regulation of glucosylsphingosine beta-glucosidase activity|positive regulation of beta-glucocerebrosidase activity|up regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|up regulation of glucosylsphingosine beta-D-glucosidase activity|activation of beta-glucosylceramidase activity|activation of glucocerebrosidase activity|up-regulation of glucosphingosine glucosylhydrolase activity|upregulation of glucosylceramidase activity|activation of glucosylsphingosine beta-glucosidase activity|positive regulation of ceramide glucosidase activity|activation of glucosphingosine glucosylhydrolase activity|positive regulation of glucosylsphingosine beta-D-glucosidase activity|activation of ceramide glucosidase activity|up-regulation of psychosine hydrolase activity|activation of acid beta-glucosidase activity|up-regulation of glucocerebrosidase activity|positive regulation of glucosylcerebrosidase activity|positive regulation of acid beta-glucosidase activity|upregulation of glucosylcerebrosidase activity|up regulation of acid beta-glucosidase activity|up regulation of psychosine hydrolase activity|upregulation of glucocerebrosidase activity|up regulation of glucosphingosine glucosylhydrolase activity|upregulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|up regulation of beta-glucocerebrosidase activity|up-regulation of acid beta-glucosidase activity|positive regulation of beta-D-glucocerebrosidase activity|activation of D-glucosyl-N-acylsphingosine glucohydrolase activity|positive regulation of glucosylsphingosine beta-glucosidase activity|up regulation of glucosylcerebrosidase activity|activation of glucosylceramidase activity|upregulation of GlcCer-beta-glucosidase activity|positive regulation of psychosine hydrolase activity|up-regulation of beta-glucosylceramidase activity bf 2016-04-11T15:44:43Z biological_process owl:Class GO:1905123 biolink:NamedThing regulation of glucosylceramidase activity Any process that modulates the frequency, rate or extent of glucosylceramidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of glucosylsphingosine beta-glucosidase activity|regulation of glucosphingosine glucosylhydrolase activity|regulation of beta-D-glucocerebrosidase activity|regulation of psychosine hydrolase activity|regulation of GlcCer-beta-glucosidase activity|regulation of glucocerebrosidase activity|regulation of acid beta-glucosidase activity|regulation of GCase activity|regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|regulation of glucosylsphingosine beta-D-glucosidase activity|regulation of glucosylcerebrosidase activity|regulation of ceramide glucosidase activity|regulation of beta-glucocerebrosidase activity|regulation of beta-glucosylceramidase activity bf 2016-04-11T15:44:26Z biological_process owl:Class GO:1903353 biolink:NamedThing regulation of nucleus organization Any process that modulates the frequency, rate or extent of nucleus organization. tmpzr1t_l9r_go_relaxed.owl regulation of nuclear organization and biogenesis|regulation of nuclear organisation|regulation of nucleus organization and biogenesis|regulation of nuclear organization|regulation of nuclear morphology hjd 2014-08-20T19:36:16Z biological_process owl:Class GO:0009910 biolink:NamedThing negative regulation of flower development Any process that stops, prevents, or reduces the frequency, rate or extent of flower development. tmpzr1t_l9r_go_relaxed.owl down-regulation of flower development|downregulation of flower development|inhibition of flower development|down regulation of flower development biological_process owl:Class GO:0002910 biolink:NamedThing positive regulation of peripheral B cell deletion Any process that activates or increases the frequency, rate, or extent of peripheral B cell deletion. tmpzr1t_l9r_go_relaxed.owl stimulation of peripheral B cell deletion|up-regulation of peripheral B cell deletion|upregulation of peripheral B cell deletion|up regulation of peripheral B cell deletion|activation of peripheral B cell deletion biological_process owl:Class GO:0044491 biolink:NamedThing positive regulation of molecular function in other organism Any process that activates or increases the frequency, rate or extent of the function of proteins in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T12:21:51Z biological_process owl:Class GO:0044359 biolink:NamedThing modulation of molecular function in other organism The process in which an organism effects a change in the function of proteins in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T01:28:16Z biological_process owl:Class GO:1905310 biolink:NamedThing regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis Any process that modulates the frequency, rate or extent of cardiac neural crest cell migration involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl rl 2016-07-11T17:34:26Z biological_process owl:Class GO:1990812 biolink:NamedThing growth cone filopodium A thin, stiff protrusion extended by the leading edge of an axonal or dendritic growth cone. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-24T22:35:16Z cellular_component owl:Class GO:1905669 biolink:NamedThing TORC1 complex assembly The aggregation, arrangement and bonding together of a set of components to form a TORC1 complex. tmpzr1t_l9r_go_relaxed.owl nutrient sensitive complex assembly|TOR complex 1 formation|rapamycin and nutrient-sensitive TOR complex formation|nutrient sensitive complex formation|TOR complex 1 assembly|dTOR/dRaptor complex formation|dTORC1 assembly|mTORC1 formation|TORC 1 complex formation|dTOR/dRaptor complex assembly|mTORC1 assembly|TORC 1 complex assembly|TORC1 assembly|rapamycin and nutrient-sensitive TOR complex assembly|dTORC1 formation|TORC1 complex formation|TORC1 formation kmv 2016-11-11T21:03:27Z biological_process owl:Class GO:0001410 biolink:NamedThing chlamydospore formation The process whose specific outcome is the progression of the chlamydospore over time, from its formation to the mature structure. A chlamydospores is a mitotic (asexual) one-celled spore, produced primarily for survival, not dispersal, originating endogenously and singly within part of a pre-existing cell and possessing an inner secondary and often thickened cell wall. An example of this is found in Candida albicans. tmpzr1t_l9r_go_relaxed.owl chlamydospore development GO:0055027 biological_process owl:Class GO:0045437 biolink:NamedThing uridine nucleosidase activity Catalysis of the reaction: H(2)O + uridine = ribofuranose + uracil. tmpzr1t_l9r_go_relaxed.owl uridine hydrolase activity|uridine ribohydrolase activity KEGG_REACTION:R01080|EC:3.2.2.3|MetaCyc:URIDINE-NUCLEOSIDASE-RXN|RHEA:15577 molecular_function owl:Class GO:0050263 biolink:NamedThing ribosylpyrimidine nucleosidase activity Catalysis of the reaction: an N-D-ribosylpyrimidine + H2O = D-ribose + a pyrimidine. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleosidase activity|N-ribosylpyrimidine nucleosidase activity|RihB|nucleoside ribohydrolase activity|YeiK|N-ribosylpyrimidine ribohydrolase activity|pyrimidine-nucleoside ribohydrolase activity EC:3.2.2.8|MetaCyc:RIBOSYLPYRIMIDINE-NUCLEOSIDASE-RXN|RHEA:56816 molecular_function owl:Class GO:0048391 biolink:NamedThing intermediate mesoderm formation The process that gives rise to the intermediate mesoderm. This process pertains to the initial formation of the structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001707 biolink:NamedThing mesoderm formation The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904970 biolink:NamedThing brush border assembly The aggregation, arrangement and bonding together of adjacent microvilli through the formation of Ca(2+)-dependent adhesion links between them, forming a brush border. tmpzr1t_l9r_go_relaxed.owl brush border formation tb 2016-02-17T00:58:30Z biological_process owl:Class GO:0019119 biolink:NamedThing phenanthrene-9,10-epoxide hydrolase activity Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9,10-dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019118 biolink:NamedThing phenanthrene-epoxide hydrolase activity Catalysis of the reaction: a phenanthrene dioxide + H2O = a dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl EC:3.3.2.- molecular_function owl:Class GO:0016661 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors EC:1.7.-.- molecular_function owl:Class GO:0098673 biolink:NamedThing inhibition of host DNA replication by virus Any process by which a virus inhibits DNA replication in its host cell. Some bacteriophages are known to do this, possibly as a way of increasing the pool of nucleotides available for virus replication. tmpzr1t_l9r_go_relaxed.owl dos 2017-01-17T15:58:15Z biological_process owl:Class GO:1903340 biolink:NamedThing positive regulation of cell wall organization or biogenesis Any process that activates or increases the frequency, rate or extent of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of cell wall organisation or biogenesis|up-regulation of cell wall organization or biogenesis at cellular level|activation of cell wall organisation or biogenesis|up regulation of cellular cell wall organization or biogenesis|up regulation of cell wall organization or biogenesis at cellular level|activation of cell wall organization or biogenesis|up regulation of cell wall organization or biogenesis|upregulation of cell wall organization or biogenesis at cellular level|positive regulation of cell wall organisation or biogenesis|up-regulation of cell wall organisation or biogenesis|upregulation of cellular cell wall organization or biogenesis|activation of cellular cell wall organization or biogenesis|up-regulation of cellular cell wall organisation or biogenesis|up-regulation of cell wall organization or biogenesis|upregulation of cell wall organization or biogenesis|positive regulation of cellular cell wall organisation or biogenesis|upregulation of cellular cell wall organisation or biogenesis|up regulation of cellular cell wall organisation or biogenesis|up-regulation of cellular cell wall organization or biogenesis|activation of cellular cell wall organisation or biogenesis|positive regulation of cell wall organization or biogenesis at cellular level|activation of cell wall organization or biogenesis at cellular level|upregulation of cell wall organisation or biogenesis|positive regulation of cellular cell wall organization or biogenesis vw 2014-08-18T13:21:06Z biological_process owl:Class GO:1900870 biolink:NamedThing tatiopterin biosynthetic process The chemical reactions and pathways resulting in the formation of tatiopterin. tmpzr1t_l9r_go_relaxed.owl tatiopterin biosynthesis|tatiopterin anabolism|tatiopterin synthesis|tatiopterin formation tt 2012-06-12T04:44:19Z biological_process owl:Class GO:0039535 biolink:NamedThing regulation of RIG-I signaling pathway Any process that modulates the frequency, rate or extent of the series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) RIG-1 (also known as DDX58) binding to viral RNA. tmpzr1t_l9r_go_relaxed.owl regulation of retinoic acid inducible gene I signaling pathway|regulation of DDX58 signaling pathway|regulation of RIG-I signalling pathway bf 2012-01-03T11:24:29Z biological_process owl:Class GO:0039531 biolink:NamedThing regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway Any process that modulates the frequency, rate or extent of the series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl regulation of MAV signaling|regulation of viral-induced cytoplasmic pattern recognition receptor signalling pathway bf 2012-01-03T11:06:56Z biological_process owl:Class GO:0098695 biolink:NamedThing inositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels Any inositol 1,4,5-trisphosphate receptor activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl IP3 receptor activity involved in regulation of postsynaptic cytosolic calcium levels dos 2017-04-04T17:07:09Z molecular_function owl:Class GO:0005220 biolink:NamedThing inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens when inositol 1,4,5-trisphosphate (IP3) has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl InsP3 receptor|IP3 receptor activity|inositol-1,4,5-trisphosphate receptor activity GO:0008095 molecular_function owl:Class GO:0005666 biolink:NamedThing RNA polymerase III complex RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase III complex|DNA-directed RNA polymerase III activity cellular_component owl:Class GO:0055029 biolink:NamedThing nuclear DNA-directed RNA polymerase complex A protein complex, located in the nucleus, that possesses DNA-directed RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0086024 biolink:NamedThing adenylate cyclase-activating adrenergic receptor signaling pathway involved in positive regulation of heart rate An adrenergic receptor signaling pathway that contributes to an increase in frequency or rate of heart contraction. Binding of adrenalin or noradrenalin to a beta-adrenergic receptor on the surface of the signal-receiving cell results in the activation of an intracellular Gs protein. Gs activates adenylate cyclase to increase intracellular cyclic-AMP (cAMP) levels. cAMP binds directly to F-channels to allow an inward flow of sodium (known as funny current, or If current). The funny current is responsible for membrane depolarization and an increase in heart rate. tmpzr1t_l9r_go_relaxed.owl adrenergic receptor signaling pathway involved in positive regulation of heart rate|beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|activation of funny current by beta-adrenergic receptor signaling pathway|Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|adrenergic receptor signalling pathway involved in positive regulation of heart rate|If activation by beta-adrenergic receptor signaling pathway tb 2011-11-10T09:38:49Z biological_process owl:Class GO:0001996 biolink:NamedThing positive regulation of heart rate by epinephrine-norepinephrine The process in which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart contraction rate by adrenaline-noradrenaline|positive regulation of heart contraction rate by epinephrine-norepinephrine|positive regulation of cardiac contraction rate by epinephrine-norepinephrine|increased chronotropy by epinephrine-norepinephrine|stimulation of heart contraction rate by epinephrine-norepinephrine|up regulation of heart contraction rate by epinephrine-norepinephrine|positive control of heart contraction rate by epinephrine-norepinephrine|upregulation of heart contraction rate by epinephrine-norepinephrine|up-regulation of heart contraction rate by epinephrine-norepinephrine|activation of heart contraction rate by epinephrine-norepinephrine biological_process owl:Class GO:0050501 biolink:NamedThing hyaluronan synthase activity Catalysis of the reaction: UDP-D-glucuronate + UDP-N-acetyl-D-glucosamine = [beta-N-acetyl-D-glucosaminyl-(1->4)-beta-D-glucuronosyl-(1->3)](n) + 2n UDP. tmpzr1t_l9r_go_relaxed.owl alternating UDP-alpha-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1,3)-[nascent hyaluronan] 4-N-acetyl-beta-D-glucosaminyltransferase and UDP-alpha-D-glucuronate:N-acetyl-beta-D-glucosaminyl-(1,4)-[nascent hyaluronan] 3-beta-D-glucuronosyltransferase activity|HAS activity|alternating UDP-alpha-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1->3)-[nascent hyaluronan] 4-N-acetyl-beta-D-glucosaminyltransferase and UDP-alpha-D-glucuronate:N-acetyl-beta-D-glucosaminyl-(1->4)-[nascent hyaluronan] 3-beta-D-glucuronosyltransferase activity|spHAS|seHAS RHEA:12528|MetaCyc:2.4.1.212-RXN|Reactome:R-HSA-2160851|EC:2.4.1.212 molecular_function owl:Class GO:1900306 biolink:NamedThing regulation of maltoheptaose transport Any process that modulates the frequency, rate or extent of maltoheptaose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:58:18Z biological_process owl:Class GO:0008449 biolink:NamedThing N-acetylglucosamine-6-sulfatase activity Catalysis of the hydrolysis of the 6-sulfate group of the N-acetyl-D-glucosamine 6-sulfate units of heparan sulfate and keratan sulfate. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine 6-sulfate sulfatase activity|glucosamine-6-sulfatase activity|N-acetyl-D-glucosamine-6-sulfate 6-sulfohydrolase activity|N-acetylglucosamine-6-sulphatase activity|2-acetamido-2-deoxy-D-glucose 6-sulfate sulfatase activity|acetylglucosamine 6-sulfatase activity|O,N-disulfate O-sulfohydrolase activity|chondroitinsulfatase Reactome:R-HSA-2263495|Reactome:R-HSA-1638032|MetaCyc:3.1.6.14-RXN|EC:3.1.6.14 molecular_function owl:Class GO:0008484 biolink:NamedThing sulfuric ester hydrolase activity Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of a sulfuric ester bond, an ester formed from sulfuric acid, O=SO(OH)2. tmpzr1t_l9r_go_relaxed.owl sulfatase activity|sulphuric ester hydrolase activity MetaCyc:ARYLSULFAT-RXN|EC:3.1.6.- molecular_function owl:Class GO:0010440 biolink:NamedThing stomatal lineage progression The process in which an unspecialized epidermal cell progresses through a series of divisions that culminate in the production of a stomatal complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048869 biolink:NamedThing cellular developmental process A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097720 biolink:NamedThing calcineurin-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell by activation of a transcription factor as a consequence of dephosphorylation by Ca(2+)-activated calcineurin. The process begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin is a calcium- and calmodulin-dependent serine/threonine protein phosphatase with a conserved function in eukaryotic species from yeast to humans. In yeast and fungi, calcineurin regulates stress signaling and cell cycle, and sporulation and virulence in pathogenic fungi. In metazoans, calcineurin is involved in cell commitment, organogenesis and organ development and immune function of T-lymphocytes. By a conserved mechanism, calcineurin phosphatase activates fungal Crz1 and mammalian NFATc by dephosphorylation and translocation of these transcription factors to the nucleus to regulate gene expression. tmpzr1t_l9r_go_relaxed.owl calcineurin signaling|calcineurin-mediated signalling pr 2016-08-25T15:22:21Z biological_process owl:Class GO:1903567 biolink:NamedThing regulation of protein localization to ciliary membrane Any process that modulates the frequency, rate or extent of protein localization to ciliary membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in ciliary membrane|regulation of protein localisation in ciliary membrane|regulation of protein localisation to ciliary membrane krc 2014-10-24T21:32:51Z biological_process owl:Class GO:1903564 biolink:NamedThing regulation of protein localization to cilium Any process that modulates the frequency, rate or extent of protein localization to cilium. tmpzr1t_l9r_go_relaxed.owl krc 2014-10-24T20:58:11Z biological_process owl:Class GO:1990266 biolink:NamedThing neutrophil migration The movement of a neutrophil within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl sl 2014-01-10T00:17:47Z biological_process owl:Class GO:0097530 biolink:NamedThing granulocyte migration The movement of a granulocyte within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-11T14:00:44Z biological_process owl:Class GO:0071943 biolink:NamedThing Myc-Max complex A transcription factor complex that consists of a heterodimer of the bHLH-ZIP proteins Myc and Max. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-01T11:56:17Z cellular_component owl:Class GO:0035908 biolink:NamedThing ventral aorta development The progression of the ventral aorta over time, from its initial formation to the mature structure. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:08:49Z biological_process owl:Class GO:0035904 biolink:NamedThing aorta development The progression of the aorta over time, from its initial formation to the mature structure. An aorta is an artery that carries blood from the heart to other parts of the body. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:00:07Z biological_process owl:Class GO:1900113 biolink:NamedThing negative regulation of histone H3-K9 trimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 trimethylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3-K9 trimethylation|inhibition of histone H3-K9 trimethylation|downregulation of histone H3-K9 trimethylation|down regulation of histone H3-K9 trimethylation bf 2012-02-21T09:09:54Z biological_process owl:Class GO:0046277 biolink:NamedThing methylgallate biosynthetic process The chemical reactions and pathways resulting in the formation of methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid. tmpzr1t_l9r_go_relaxed.owl methylgallate synthesis|methylgallate biosynthesis|methylgallate formation|methylgallate anabolism biological_process owl:Class GO:0036176 biolink:NamedThing response to neutral pH Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a neutral pH (pH close to 7) stimulus. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-29T01:38:00Z biological_process owl:Class GO:0009268 biolink:NamedThing response to pH Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005971 biolink:NamedThing ribonucleoside-diphosphate reductase complex An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate from ribonucleoside diphosphate, using either thioredoxin disulfide or glutaredoxin disulfide as an acceptor. tmpzr1t_l9r_go_relaxed.owl ribonucleotide reductase complex|RNR complex cellular_component owl:Class GO:0004668 biolink:NamedThing protein-arginine deiminase activity Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3. This reaction is calcium-dependent. tmpzr1t_l9r_go_relaxed.owl peptidylarginine deiminase activity|protein-L-arginine iminohydrolase activity https://github.com/geneontology/go-ontology/issues/18666 Reactome:R-HSA-1183128|EC:3.5.3.15|Reactome:R-HSA-3247569|RHEA:18089|MetaCyc:PROTEIN-ARGININE-DEIMINASE-RXN molecular_function owl:Class GO:0061356 biolink:NamedThing regulation of Wnt protein secretion Any process that modulates the frequency, rate or extent of the controlled release of a Wnt protein from a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-08T01:09:51Z biological_process owl:Class GO:0048835 biolink:NamedThing specification of decreased petal number Any process that reduces the number of petals produced in a developing flower. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048834 biolink:NamedThing specification of petal number Any process that modulates the number of petals formed in a flower. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071950 biolink:NamedThing FADH2 binding Binding to the reduced form, FADH2, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl reduced flavine-adenine dinucleotide binding|reduced flavin adenine dinucleotide binding mah 2010-10-07T12:31:34Z molecular_function owl:Class GO:0050660 biolink:NamedThing flavin adenine dinucleotide binding Binding to FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. tmpzr1t_l9r_go_relaxed.owl FAD or FADH2 binding|flavine-adenine dinucleotide binding molecular_function owl:Class GO:0001820 biolink:NamedThing serotonin secretion The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells. tmpzr1t_l9r_go_relaxed.owl serotonin release|5-hydroxytryptamine secretion|5-HT secretion biological_process owl:Class GO:1990622 biolink:NamedThing CHOP-ATF3 complex A heterodimeric protein complex that is composed of CHOP (C/EBP homology protein, GADD153) and ATF3 (activating transcription factor 3) subunits. tmpzr1t_l9r_go_relaxed.owl ATF3-CHOP complex|CHOP-ATF3 heterodimeric complex|GADD153-ATF3 complex|CHOP-ATF3 heterodimer bf 2015-01-29T16:43:19Z cellular_component owl:Class GO:1905935 biolink:NamedThing positive regulation of cell fate determination Any process that activates or increases the frequency, rate or extent of cell fate determination. tmpzr1t_l9r_go_relaxed.owl upregulation of cell fate determination|activation of cell fate determination|up-regulation of cell fate determination|up regulation of cell fate determination bhm 2017-02-09T11:25:38Z biological_process owl:Class GO:0032964 biolink:NamedThing collagen biosynthetic process The chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). tmpzr1t_l9r_go_relaxed.owl collagen synthesis|collagen formation|collagen biosynthesis|collagen anabolism biological_process owl:Class GO:0032963 biolink:NamedThing collagen metabolic process The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). tmpzr1t_l9r_go_relaxed.owl collagen metabolism biological_process owl:Class GO:0009969 biolink:NamedThing xyloglucan biosynthetic process The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. tmpzr1t_l9r_go_relaxed.owl xyloglucan synthesis|xyloglucan biosynthesis|xyloglucan formation|xyloglucan anabolism biological_process owl:Class GO:0048670 biolink:NamedThing regulation of collateral sprouting Any process that modulates the frequency, rate or extent of collateral sprouting. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050770 biolink:NamedThing regulation of axonogenesis Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010848 biolink:NamedThing regulation of chromatin disassembly Any process that modulates the frequency, rate or extent of chromatin disassembly. Chromatin disassembly is the controlled breakdown of chromatin from a higher order structure into its simpler subcomponents, DNA, histones, and other proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001672 biolink:NamedThing regulation of chromatin assembly or disassembly Any process that modulates the frequency, rate or extent of chromatin assembly or disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of chromatin assembly/disassembly biological_process owl:Class GO:0061360 biolink:NamedThing optic chiasma development The developmental process pertaining to the progression of the optic chiasm from its initial formation to the mature structure. The process begins when the pathfinding of the axons of the developing optic nerve cause some axons to cross at the midline of the brain and ends when the axons are mature. tmpzr1t_l9r_go_relaxed.owl optic chiasm development dph 2010-10-13T08:00:29Z biological_process owl:Class GO:0036450 biolink:NamedThing polyuridylation-dependent decapping of nuclear-transcribed mRNA Cleavage of the 5'-cap of a nuclear-transcribed mRNA that has been modified by the enzymatic addition of a sequence of uridylyl residues (polyuridylation) at the 3' end. tmpzr1t_l9r_go_relaxed.owl uridylation-dependent decapping of nuclear-transcribed mRNA bf 2013-11-04T11:37:28Z biological_process owl:Class GO:0031087 biolink:NamedThing deadenylation-independent decapping of nuclear-transcribed mRNA Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening. tmpzr1t_l9r_go_relaxed.owl deadenylylation-independent decapping|deadenylation-independent decapping of nuclear mRNA biological_process owl:Class GO:0009694 biolink:NamedThing jasmonic acid metabolic process The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. tmpzr1t_l9r_go_relaxed.owl jasmonic acid metabolism biological_process owl:Class GO:0071939 biolink:NamedThing vitamin A import The directed movement of vitamin A into a cell or organelle. Vitamin A is any of several retinoid derivatives of beta-carotene, primarily retinol, retinal, or retinoic acid. tmpzr1t_l9r_go_relaxed.owl vitamin A uptake mah 2010-09-30T04:36:22Z biological_process owl:Class GO:0071938 biolink:NamedThing vitamin A transport The directed movement any form of vitamin A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Vitamin A is any of several retinoid derivatives of beta-carotene, primarily retinol, retinal, or retinoic acid. tmpzr1t_l9r_go_relaxed.owl vitamin A uptake and transport mah 2010-09-30T04:15:10Z biological_process owl:Class GO:1901935 biolink:NamedThing beta-caryophyllene metabolic process The chemical reactions and pathways involving beta-caryophyllene. tmpzr1t_l9r_go_relaxed.owl beta-caryophyllene metabolism ms 2013-02-18T14:55:06Z biological_process owl:Class GO:0045843 biolink:NamedThing negative regulation of striated muscle tissue development Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle development. tmpzr1t_l9r_go_relaxed.owl downregulation of striated muscle development|inhibition of striated muscle development|down regulation of striated muscle development|down-regulation of striated muscle development biological_process owl:Class GO:1901862 biolink:NamedThing negative regulation of muscle tissue development Any process that stops, prevents or reduces the frequency, rate or extent of muscle tissue development. tmpzr1t_l9r_go_relaxed.owl inhibition of muscle tissue development|down regulation of muscle tissue development|down-regulation of muscle tissue development|downregulation of muscle tissue development yaf 2013-02-01T10:30:52Z biological_process owl:Class GO:0044080 biolink:NamedThing modulation by symbiont of host cGMP-mediated signal transduction Any process in which a symbiont organism modulates the rate, frequency or extent of cGMP-mediated signaling in its host organism. cGMP-mediated signaling is a series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host cGMP-mediated signal transduction pathway|modulation of host cGMP-mediated signal transduction by symbiont|modulation by symbiont of host cGMP-mediated signalling|modulation by symbiont of host cGMP-mediated signaling|regulation by symbiont of host cGMP-mediated signal transduction biological_process owl:Class GO:0052027 biolink:NamedThing modulation by symbiont of host signal transduction pathway Any process in which an organism modulates the frequency, rate or extent of the host signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host signal transduction|modulation of signal transduction in other organism involved in symbiotic interaction|regulation by symbiont of host signal transduction pathway|modulation of host signal transduction by symbiont GO:0052250 biological_process owl:Class GO:0095500 biolink:NamedThing acetylcholine receptor signaling pathway The series of molecular signals generated as a consequence of an acetylcholine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl acetylcholine receptor signalling pathway biological_process owl:Class GO:0098926 biolink:NamedThing postsynaptic signal transduction Signal transduction in which the initial step occurs in a postsynapse. tmpzr1t_l9r_go_relaxed.owl postsynaptic signaling pathway Do not directly annotate. This term is intended for automatically grouping annotations to signal transduction classes extended with has_start_location/occurs_in postsynapse or one of its parts. biological_process owl:Class GO:0060334 biolink:NamedThing regulation of interferon-gamma-mediated signaling pathway Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interferon-gamma binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of type II IFN-mediated signaling pathway|regulation of interferon-gamma-mediated signalling pathway|regulation of immune interferon signaling pathway|regulation of type II interferon-mediated signaling pathway|regulation of gamma-interferon-mediated signaling pathway biological_process owl:Class GO:0001959 biolink:NamedThing regulation of cytokine-mediated signaling pathway Any process that modulates the frequency, rate or extent of the cytokine mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of cytokine and chemokine mediated signaling pathway|regulation of cytokine mediated signaling pathway|regulation of cytokine mediated signalling pathway biological_process owl:Class GO:0001182 biolink:NamedThing promoter clearance from RNA polymerase I promoter Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase I, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors. tmpzr1t_l9r_go_relaxed.owl krc 2011-08-15T03:49:28Z biological_process owl:Class GO:0001109 biolink:NamedThing promoter clearance during DNA-templated transcription Any process involved in the transition from the initiation to the elongation phases of transcription by a DNA-dependent RNA polymerase, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors. tmpzr1t_l9r_go_relaxed.owl promoter clearance during DNA-dependent transcription|promoter escape|promoter clearance from bacterial-type RNA polymerase promoter krc 2010-12-01T02:13:09Z GO:0001122 biological_process owl:Class GO:0008202 biolink:NamedThing steroid metabolic process The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. tmpzr1t_l9r_go_relaxed.owl steroid metabolism Wikipedia:Steroid_metabolism biological_process owl:Class GO:0050105 biolink:NamedThing L-gulonolactone oxidase activity Catalysis of the reaction: L-gulono-1,4-lactone + O2 = L-xylo-hex-3-ulonolactone + H2O2. tmpzr1t_l9r_go_relaxed.owl L-gulono-1,4-lactone:oxygen 3-oxidoreductase activity|L-gulono-gamma-lactone:O2 oxidoreductase activity|L-gulono-gamma-lactone oxidase activity|GLO activity|L-gulono-gamma-lactone:oxidoreductase activity RHEA:32363|EC:1.1.3.8|MetaCyc:L-GULONOLACTONE-OXIDASE-RXN molecular_function owl:Class GO:0072113 biolink:NamedThing head kidney development The process whose specific outcome is the progression of the head kidney over time, from its formation to the mature structure. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T11:09:38Z biological_process owl:Class GO:0038100 biolink:NamedThing nodal binding Binding to a nodal protein, a member of the transforming growth factor-beta superfamily. tmpzr1t_l9r_go_relaxed.owl bf 2012-02-17T11:19:08Z molecular_function owl:Class GO:0099111 biolink:NamedThing microtubule-based transport A microtubule-based process that results in the transport of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006810 biolink:NamedThing transport The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. tmpzr1t_l9r_go_relaxed.owl solute:solute exchange|small molecule transport|single-organism transport Note that this term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term, for e.g. to transmembrane transport, to microtubule-based transport or to vesicle-mediated transport. jl 2012-12-13T16:25:32Z GO:0015457|GO:0044765|GO:0015460 biological_process owl:Class GO:0080101 biolink:NamedThing phosphatidyl-N-dimethylethanolamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidyl-N-dimethylethanolamine = S-adenosyl-L-homocysteine + phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN4FS-2|RHEA:32739|KEGG_REACTION:R01320|EC:2.1.1.71 dhl 2009-04-23T04:02:41Z molecular_function owl:Class GO:0042920 biolink:NamedThing 3-hydroxyphenylpropionic acid transmembrane transport The directed movement of 3-hydroxyphenylpropionic acid across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl m-hydroxyphenylpropionic acid transport|3-(3-hydroxyphenyl)propionic acid transport|3-hydroxyphenylpropionic acid transport biological_process owl:Class GO:0015718 biolink:NamedThing monocarboxylic acid transport The directed movement of monocarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010803 biolink:NamedThing regulation of tumor necrosis factor-mediated signaling pathway Any process that modulates the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of TNF-mediated signaling pathway|regulation of TNF signaling|regulation of tumor necrosis factor-mediated signalling pathway biological_process owl:Class GO:2000171 biolink:NamedThing negative regulation of dendrite development Any process that stops, prevents, or reduces the frequency, rate or extent of dendrite development. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-07T10:53:15Z biological_process owl:Class GO:0009686 biolink:NamedThing gibberellin biosynthetic process The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. tmpzr1t_l9r_go_relaxed.owl gibberellic acid synthesis|gibberellic acid biosynthesis|gibberellin biosynthesis|gibberellic acid biosynthetic process|gibberellic acid anabolism|gibberellic acid formation MetaCyc:PWY-5070|MetaCyc:PWY-5052|MetaCyc:PWY-5035|MetaCyc:PWY-5036 biological_process owl:Class GO:0140131 biolink:NamedThing positive regulation of lymphocyte chemotaxis Any process that activates or increases the frequency, rate or extent of lymphocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl pg 2017-11-02T10:26:40Z biological_process owl:Class GO:1901623 biolink:NamedThing regulation of lymphocyte chemotaxis Any process that modulates the frequency, rate or extent of lymphocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-13T23:03:23Z biological_process owl:Class GO:0099041 biolink:NamedThing vesicle tethering to Golgi The initial, indirect interaction between a transport vesicle membrane and the membrane of the Golgi. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior fusion. tmpzr1t_l9r_go_relaxed.owl tb 2013-01-08T15:07:50Z biological_process owl:Class GO:0099022 biolink:NamedThing vesicle tethering The initial, indirect interaction between a vesicle membrane and a membrane to which it is targeted for fusion. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to interaction between factors involved in fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030736 biolink:NamedThing phenol O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + phenol = S-adenosyl-L-homocysteine + anisole + H(+). tmpzr1t_l9r_go_relaxed.owl PMT|S-adenosyl-L-methionine:phenol O-methyltransferase activity KEGG_REACTION:R01239|EC:2.1.1.25|RHEA:14809|MetaCyc:PHENOL-O-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0002710 biolink:NamedThing negative regulation of T cell mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl inhibition of T cell mediated immunity|negative regulation of T lymphocyte mediated immunity|down-regulation of T cell mediated immunity|down regulation of T cell mediated immunity|negative regulation of T-cell mediated immunity|negative regulation of T-lymphocyte mediated immunity|downregulation of T cell mediated immunity biological_process owl:Class GO:0097214 biolink:NamedThing positive regulation of lysosomal membrane permeability Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of lysosome membrane permeability pr 2012-01-12T10:22:17Z biological_process owl:Class GO:1905710 biolink:NamedThing positive regulation of membrane permeability Any process that activates or increases the frequency, rate or extent of the passage or uptake of molecules by a membrane. tmpzr1t_l9r_go_relaxed.owl hbye 2016-11-18T13:10:53Z biological_process owl:Class GO:0046400 biolink:NamedThing keto-3-deoxy-D-manno-octulosonic acid metabolic process The chemical reactions and pathways involving keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl keto-3-deoxy-D-manno-octulosonic acid metabolism|KDO metabolism|ketodeoxyoctanoate metabolic process|KDO metabolic process biological_process owl:Class GO:0019752 biolink:NamedThing carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl carboxylic acid metabolism biological_process owl:Class GO:0015996 biolink:NamedThing chlorophyll catabolic process The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. tmpzr1t_l9r_go_relaxed.owl chlorophyll degradation|chlorophyll breakdown|chlorophyll catabolism biological_process owl:Class GO:0015994 biolink:NamedThing chlorophyll metabolic process The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. tmpzr1t_l9r_go_relaxed.owl chlorophyll metabolism biological_process owl:Class GO:0052187 biolink:NamedThing modification by host of symbiont cellular component The process in which an organism effects a change in the structure or function of a symbiont cellular component. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052183 biolink:NamedThing modification by host of symbiont structure The process in which an organism effects a change in an anatomical part or cellular component of the host organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901661 biolink:NamedThing quinone metabolic process The chemical reactions and pathways involving quinone. tmpzr1t_l9r_go_relaxed.owl quinone cofactor metabolic process|quinone cofactor metabolism|quinone metabolism pr 2012-11-20T14:44:39Z GO:0042375 biological_process owl:Class GO:2000073 biolink:NamedThing regulation of cytokinesis, site selection Any process that modulates the frequency, rate or extent of site selection that occurs as part of cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of site selection involved in cell cycle cytokinesis tb 2010-08-27T11:15:15Z biological_process owl:Class GO:0019409 biolink:NamedThing aerobic respiration, using ammonia as electron donor The metabolic process in which ammonia (NH3) is oxidized to nitrite (NO2) in the presence of oxygen; enzymatic reactions convert ammonia to hydrazine, and hydrazine to nitrite. tmpzr1t_l9r_go_relaxed.owl aerobic ammonia oxidation to nitrite via hydrazine MetaCyc:AMMOXID-PWY biological_process owl:Class GO:0009060 biolink:NamedThing aerobic respiration The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-3781|Wikipedia:Cellular_respiration#Aerobic_respiration biological_process owl:Class GO:0048377 biolink:NamedThing lateral mesodermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into a lateral mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl lateral mesoderm cell fate specification|lateral plate mesodermal cell fate specification|lateral plate mesoderm cell fate specification biological_process owl:Class GO:0007501 biolink:NamedThing mesodermal cell fate specification The cell fate determination process in which a cell becomes capable of differentiating autonomously into a mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl mesoderm cell fate specification Note that this term was 'fate specification in mesoderm'. String of term was changed to correspond to format of sibling terms 'endoderm cell fate specification' and 'ectoderm cell fate specification'. biological_process owl:Class GO:0005923 biolink:NamedThing bicellular tight junction An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes. tmpzr1t_l9r_go_relaxed.owl zonula occludens NIF_Subcellular:sao1939999134|Wikipedia:Tight_junction cellular_component owl:Class GO:0070160 biolink:NamedThing tight junction A cell-cell junction that seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other. tmpzr1t_l9r_go_relaxed.owl occluding junction|occluding cell junction Wikipedia:Tight_junction cellular_component owl:Class GO:0021708 biolink:NamedThing Lugaro cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature Lugaro cell. Differentiation includes the processes involved in commitment of a neuroblast to a Lugaro cell fate. A Lugaro cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097154 biolink:NamedThing GABAergic neuron differentiation The process in which a neuroblast acquires the specialized structural and functional features of a GABAergic neuron. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-14T09:39:11Z biological_process owl:Class GO:0051639 biolink:NamedThing actin filament network formation The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments. tmpzr1t_l9r_go_relaxed.owl actin gel formation|actin gel biosynthesis biological_process owl:Class GO:0007015 biolink:NamedThing actin filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament localization|actin filament organisation biological_process owl:Class GO:1904155 biolink:NamedThing DN2 thymocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a DN2 thymocyte. A DN2 thymocyte is a CD4-,CD8- thymocyte that is also CD44+,CD25-. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-15T12:52:53Z biological_process owl:Class GO:0033077 biolink:NamedThing T cell differentiation in thymus The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus. tmpzr1t_l9r_go_relaxed.owl thymic T cell differentiation|T cell development in thymus|thymocyte differentiation|thymocyte cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0022804 biolink:NamedThing active transmembrane transporter activity Enables the transfer of a specific substance or related group of substances from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl pump activity|carrier activity|permease activity|active carrier activity molecular_function owl:Class GO:0071883 biolink:NamedThing MAPK-activating adrenergic receptor signaling pathway The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand and leading to the activation of a MAP kinase cascade. tmpzr1t_l9r_go_relaxed.owl activation of MAP kinase activity by adrenergic receptor signaling pathway|activation of MAP kinase activity by adrenergic receptor signalling pathway|activation of MAPK activity by adrenergic receptor signalling pathway|activation of MAPK activity by adrenergic receptor signaling pathway https://github.com/geneontology/go-ontology/issues/21544 mah 2010-09-13T04:34:47Z biological_process owl:Class GO:0071875 biolink:NamedThing adrenergic receptor signaling pathway A series of molecular signals generated as a consequence of an adrenergic receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl adrenergic receptor signalling pathway|adrenoceptor signaling pathway mah 2010-09-13T03:44:44Z biological_process owl:Class GO:0102783 biolink:NamedThing beta-carotene oxygenase activity Catalysis of the reaction: beta-carotene + 2 O2 = 2 beta-ionone + 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7883 molecular_function owl:Class GO:0016119 biolink:NamedThing carotene metabolic process The chemical reactions and pathways involving carotenes, hydrocarbon carotenoids. tmpzr1t_l9r_go_relaxed.owl carotene metabolism biological_process owl:Class GO:0031025 biolink:NamedThing equatorial microtubule organizing center disassembly The process in which the equatorial microtubule organizing center is disassembled at the end of mitosis. tmpzr1t_l9r_go_relaxed.owl equatorial microtubule organising center disassembly biological_process owl:Class GO:0060393 biolink:NamedThing regulation of pathway-restricted SMAD protein phosphorylation Any process that modulates the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030612 biolink:NamedThing arsenate reductase (thioredoxin) activity Catalysis of the reaction: arsenate + thioredoxin = arsenite + thioredoxin disulfide. Thioredoxin disulfide is also known as oxidized thioredoxin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10737 molecular_function owl:Class GO:0030611 biolink:NamedThing arsenate reductase activity Catalysis of the interconversion of arsenate and arsenite. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004521 biolink:NamedThing endoribonuclease activity Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl endonuclease G activity Reactome:R-HSA-426520|Reactome:R-HSA-9009936|Reactome:R-HSA-425923|Reactome:R-HSA-9023912|Reactome:R-HSA-927836|Reactome:R-HSA-6814555|Reactome:R-HSA-9023909|Reactome:R-HSA-5601910|Reactome:R-HSA-5601887|Reactome:R-HSA-6791223|Reactome:R-HSA-9009941 molecular_function owl:Class GO:1904512 biolink:NamedThing regulation of initiation of premeiotic DNA replication Any process that modulates the frequency, rate or extent of initiation of premeiotic DNA replication. tmpzr1t_l9r_go_relaxed.owl regulation of initiation of premeiotic DNA synthesis|regulation of initiation of meiotic DNA synthesis|regulation of premeiotic DNA replication initiation|regulation of meiotic DNA replication initiation mah 2015-07-28T12:59:17Z biological_process owl:Class GO:1904982 biolink:NamedThing sucrose transmembrane transport The process in which sucrose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-02-28T21:16:51Z biological_process owl:Class GO:0090190 biolink:NamedThing positive regulation of branching involved in ureteric bud morphogenesis Any process that increases the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:11:17Z biological_process owl:Class GO:1902219 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl downregulation of intrinsic apoptotic signaling pathway in response to osmotic stress|down-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress|down regulation of intrinsic apoptotic signaling pathway in response to osmotic stress|inhibition of intrinsic apoptotic signaling pathway in response to osmotic stress rl 2013-06-13T10:19:12Z biological_process owl:Class GO:1904230 biolink:NamedThing negative regulation of succinate dehydrogenase activity Any process that stops, prevents or reduces the frequency, rate or extent of succinate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of fumarate dehydrogenase activity|down-regulation of succinate dehydrogenase activity|downregulation of fumaric hydrogenase activity|down regulation of fumarate dehydrogenase activity|downregulation of succinic acid dehydrogenase activity|downregulation of succinate:(acceptor) oxidoreductase activity|down-regulation of succinate:(acceptor) oxidoreductase activity|down regulation of succinate:(acceptor) oxidoreductase activity|downregulation of succinate:acceptor oxidoreductase activity|downregulation of succinyl dehydrogenase activity|down-regulation of succinyl dehydrogenase activity|inhibition of succinate oxidoreductase activity|down regulation of succinyl dehydrogenase activity|downregulation of succinodehydrogenase activity|down regulation of fumarate reductase activity|negative regulation of succinodehydrogenase activity|down-regulation of succinate:acceptor oxidoreductase activity|negative regulation of fumaric hydrogenase activity|negative regulation of succinate:(acceptor) oxidoreductase activity|inhibition of succinic acid dehydrogenase activity|down-regulation of fumarate reductase activity|negative regulation of fumarate reductase activity|down regulation of succinate dehydrogenase activity|down-regulation of fumaric hydrogenase activity|inhibition of fumarate reductase activity|downregulation of fumarate dehydrogenase activity|inhibition of succinyl dehydrogenase activity|down regulation of succinate oxidoreductase activity|down regulation of succinodehydrogenase activity|downregulation of succinate oxidoreductase activity|downregulation of succinate dehydrogenase activity|inhibition of succinate:acceptor oxidoreductase activity|down regulation of succinic acid dehydrogenase activity|down-regulation of fumarate dehydrogenase activity|down-regulation of succinic acid dehydrogenase activity|negative regulation of succinate oxidoreductase activity|negative regulation of fumarate dehydrogenase activity|down-regulation of succinodehydrogenase activity|down regulation of succinate:acceptor oxidoreductase activity|inhibition of succinate:(acceptor) oxidoreductase activity|negative regulation of succinic acid dehydrogenase activity|inhibition of fumaric hydrogenase activity|down regulation of fumaric hydrogenase activity|inhibition of succinodehydrogenase activity|down-regulation of succinate oxidoreductase activity|negative regulation of succinyl dehydrogenase activity|negative regulation of succinate:acceptor oxidoreductase activity|downregulation of fumarate reductase activity|inhibition of succinate dehydrogenase activity rl 2015-05-15T09:51:14Z biological_process owl:Class GO:1903070 biolink:NamedThing negative regulation of ER-associated ubiquitin-dependent protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of ER-associated protein degradation|inhibition of endoplasmic reticulum-associated protein catabolism|down-regulation of ER-associated protein catabolic process|negative regulation of ERAD|negative regulation of endoplasmic reticulum-associated protein catabolism|down-regulation of endoplasmic reticulum-associated protein catabolic process|negative regulation of ER-associated protein breakdown|downregulation of ER-associated ubiquitin-dependent protein catabolic process|inhibition of ER-associated protein catabolism|down regulation of ER-associated protein breakdown|inhibition of ERAD|down-regulation of ER-associated protein catabolism|down regulation of ER-associated ubiquitin-dependent protein catabolic process|downregulation of ER-associated protein catabolic process|down-regulation of endoplasmic reticulum-associated protein catabolism|down-regulation of ER-associated ubiquitin-dependent protein catabolic process|down-regulation of ERAD|down regulation of endoplasmic reticulum-associated protein catabolic process|downregulation of ER-associated protein breakdown|down regulation of endoplasmic reticulum-associated protein catabolism|down regulation of ER-associated protein catabolism|down-regulation of ER-associated protein breakdown|down regulation of ER-associated protein catabolic process|down regulation of ERAD|negative regulation of endoplasmic reticulum-associated protein catabolic process|negative regulation of ER-associated protein degradation|inhibition of ER-associated ubiquitin-dependent protein catabolic process|downregulation of ERAD|inhibition of ER-associated protein breakdown|down-regulation of ER-associated protein degradation|negative regulation of ER-associated protein catabolism|negative regulation of ER-associated protein catabolic process|inhibition of ER-associated protein catabolic process|down regulation of ER-associated protein degradation|downregulation of ER-associated protein catabolism|downregulation of endoplasmic reticulum-associated protein catabolism|inhibition of endoplasmic reticulum-associated protein catabolic process|downregulation of endoplasmic reticulum-associated protein catabolic process|downregulation of ER-associated protein degradation rph 2014-05-28T17:53:53Z biological_process owl:Class GO:1904293 biolink:NamedThing negative regulation of ERAD pathway Any process that stops, prevents or reduces the frequency, rate or extent of ERAD pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of ER-associated degradation pathway|down-regulation of endoplasmic reticulum-associated degradation|negative regulation of endoplasmic reticulum-associated degradation|down-regulation of ERAD pathway|down regulation of endoplasmic reticulum-associated protein degradation pathway|downregulation of endoplasmic reticulum-associated degradation|down-regulation of ER-associated degradation pathway|down regulation of ER-associated degradation pathway|inhibition of ERAD pathway|down regulation of ERAD pathway|down-regulation of endoplasmic reticulum-associated protein degradation pathway|downregulation of ERAD pathway|inhibition of endoplasmic reticulum-associated protein degradation pathway|down regulation of endoplasmic reticulum-associated degradation|negative regulation of endoplasmic reticulum-associated protein degradation pathway|downregulation of endoplasmic reticulum-associated protein degradation pathway|negative regulation of ER-associated degradation pathway|inhibition of ER-associated degradation pathway|inhibition of endoplasmic reticulum-associated degradation bf 2015-06-09T14:44:33Z biological_process owl:Class GO:0019809 biolink:NamedThing spermidine binding Binding to spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904161 biolink:NamedThing DNA synthesis involved in UV-damage excision repair Any DNA synthesis that is involved in UV-damage excision repair. tmpzr1t_l9r_go_relaxed.owl mitotic DNA repair synthesis involved in UV-damaged DNA endonuclease-dependent excision repair|DNA synthesis during UV-damaged DNA endonuclease-dependent excision repair|DNA synthesis involved in UVER|mitotic DNA repair synthesis involved in UV-damage excision repair|DNA synthesis involved in UV-damaged DNA endonuclease-dependent excision repair|mitotic DNA repair synthesis involved in UVER|DNA synthesis during UVER|DNA synthesis involved in UVDE-dependent excision repair|mitotic DNA repair synthesis involved in UVDE-dependent excision repair|DNA synthesis during UV-damage excision repair|DNA synthesis involved in AER|DNA synthesis involved in alternative excision repair|DNA synthesis during UVDE-dependent excision repair mah 2015-04-21T14:53:12Z biological_process owl:Class GO:0000731 biolink:NamedThing DNA synthesis involved in DNA repair Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template. tmpzr1t_l9r_go_relaxed.owl DNA repair synthesis|mitotic DNA repair synthesis|DNA synthesis during DNA repair biological_process owl:Class GO:0044862 biolink:NamedThing protein transport out of plasma membrane raft The directed movement of a protein out of a plasma membrane raft. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:32:56Z biological_process owl:Class GO:0045651 biolink:NamedThing positive regulation of macrophage differentiation Any process that activates or increases the frequency, rate or extent of macrophage differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of macrophage differentiation|activation of macrophage differentiation|up-regulation of macrophage differentiation|stimulation of macrophage differentiation|up regulation of macrophage differentiation biological_process owl:Class GO:0045649 biolink:NamedThing regulation of macrophage differentiation Any process that modulates the frequency, rate or extent of macrophage differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901876 biolink:NamedThing regulation of calcium ion binding Any process that modulates the frequency, rate or extent of calcium ion binding. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion storage activity rl 2013-02-06T12:38:12Z biological_process owl:Class GO:0010265 biolink:NamedThing SCF complex assembly The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003850 biolink:NamedThing 2-deoxyglucose-6-phosphatase activity Catalysis of the reaction: 2-deoxy-D-glucose-6-phosphate + H2O = 2-deoxy-D-glucose + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-deoxyglucose-6-phosphate phosphatase activity|2-deoxy-D-glucose-6-phosphate phosphohydrolase activity MetaCyc:3.1.3.68-RXN|KEGG_REACTION:R02587|EC:3.1.3.68|RHEA:22236 molecular_function owl:Class GO:0060387 biolink:NamedThing fertilization envelope A structure that lies outside the plasma membrane and surrounds the egg. The fertilization envelope forms from the vitelline membrane after fertilization as a result of cortical granule release. tmpzr1t_l9r_go_relaxed.owl fertilization membrane cellular_component owl:Class GO:0035805 biolink:NamedThing egg coat A specialized extracellular matrix that surrounds the plasma membrane of the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development. tmpzr1t_l9r_go_relaxed.owl zona pellucida|vitelline membrane bf 2011-04-19T02:07:23Z cellular_component owl:Class GO:0035120 biolink:NamedThing post-embryonic appendage morphogenesis The process, occurring after embryonic development, by which the anatomical structures of an appendage are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090646 biolink:NamedThing mitochondrial tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group, in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl tb 2015-06-12T15:57:13Z biological_process owl:Class GO:0008033 biolink:NamedThing tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. tmpzr1t_l9r_go_relaxed.owl tRNA maturation biological_process owl:Class GO:1900723 biolink:NamedThing negative regulation of protein adenylylation Any process that stops, prevents or reduces the frequency, rate or extent of protein adenylylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein adenylation|down-regulation of protein adenylylation|downregulation of protein AMPylation|down regulation of protein adenylylation|down-regulation of protein AMPylation|inhibition of protein adenylation|downregulation of protein adenylylation|negative regulation of protein AMPylation|downregulation of protein amino acid adenylylation|negative regulation of protein amino acid adenylylation|down regulation of protein adenylation|down regulation of protein amino acid adenylylation|downregulation of protein adenylation|negative regulation of protein adenylation|inhibition of protein AMPylation|inhibition of protein amino acid adenylylation|down regulation of protein AMPylation|inhibition of protein adenylylation|down-regulation of protein amino acid adenylylation jl 2012-05-24T03:16:06Z biological_process owl:Class GO:0048183 biolink:NamedThing activin AB complex A nonsteroidal regulator, composed of two covalently linked inhibin beta subunits (sometimes known as activin beta or activin/inhibin beta), inhibin beta-A and inhibin beta-B. tmpzr1t_l9r_go_relaxed.owl inhibin beta-B|inhibin beta-A Note that the actions of the activin complex are the opposite of those of the inhibin complex, which is a dimer of an inhibin beta-A or inhibin beta-B subunit and a inhibin alpha subunit. See 'inhibin complex ; GO:0043511'. cellular_component owl:Class GO:0048180 biolink:NamedThing activin complex A nonsteroidal regulator, composed of two covalently linked inhibin beta subunits, inhibin beta-A and inhibin beta-B (sometimes known as activin beta or activin/inhibin beta). There are three forms of activin complex, activin A, which is composed of 2 inhibin beta-A subunits, activin B, which is composed of 2 inhibin beta-B subunits, and activin AB, which is composed of an inhibin beta-A and an inhibin beta-B subunit. tmpzr1t_l9r_go_relaxed.owl Note that the actions of the activin complex are the opposite of those of the inhibin complex, which is a dimer of an inhibin beta-A or inhibin beta-B subunit and a inhibin alpha subunit. See 'inhibin complex ; GO:0043511'. cellular_component owl:Class GO:0006741 biolink:NamedThing NADP biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH. tmpzr1t_l9r_go_relaxed.owl NADPH biosynthesis|NADPH biosynthetic process|NADP (oxidized) biosynthetic process|oxidized nicotinamide adenine dinucleotide phosphate biosynthetic process|oxidized NADP biosynthesis|NADP (reduced) biosynthesis|NADP synthesis|reduced NADP biosynthetic process|oxidized NADP biosynthetic process|NADP (reduced) biosynthetic process|reduced nicotinamide adenine dinucleotide phosphate biosynthetic process|nicotinamide adenine dinucleotide phosphate biosynthesis|NADP biosynthesis|reduced nicotinamide adenine dinucleotide phosphate biosynthesis|NADP formation|NADP anabolism|oxidized nicotinamide adenine dinucleotide phosphate biosynthesis|reduced NADP biosynthesis|nicotinamide adenine dinucleotide phosphate biosynthetic process|NADP (oxidized) biosynthesis biological_process owl:Class GO:0006739 biolink:NamedThing NADP metabolic process The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide phosphate metabolic process|oxidized nicotinamide adenine dinucleotide phosphate metabolic process|NADP (reduced) metabolic process|nicotinamide adenine dinucleotide phosphate metabolism|reduced nicotinamide adenine dinucleotide phosphate metabolism|NADPH metabolic process|oxidized nicotinamide adenine dinucleotide phosphate metabolism|NADP (reduced) metabolism|reduced NADP metabolism|reduced nicotinamide adenine dinucleotide phosphate metabolic process|reduced NADP metabolic process|NAD phosphorylation and dephosphorylation|NADP (oxidized) metabolic process|NADPH metabolism|NADP (oxidized) metabolism|oxidized NADP metabolism|oxidized NADP metabolic process|NADP metabolism biological_process owl:Class GO:0072380 biolink:NamedThing TRC complex A protein complex found in yeast that contains GET4, MDY2 (GET5), SGT2, and at least two heat shock proteins, HSP104 and YBR137W. The TRC complex transfers tail-anchored (TA) proteins to GET3 for targeting to the endoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl TMD recognition complex|GET4-GET5 transmembrane domain recognition complex https://github.com/geneontology/go-ontology/issues/20889 mah 2010-11-24T02:43:41Z cellular_component owl:Class GO:0072379 biolink:NamedThing ER membrane insertion complex A protein complex that is involved in the post-translational delivery of tail-anchored (TA) membrane proteins to the endoplasmic reticulum. TA membrane proteins, also called type II transmembrane proteins, contain a single C-terminal transmembrane region. Some ER membrane insertion complex subunits are conserved between different species such as mammals and budding yeast. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum membrane insertion complex mah 2010-11-24T02:07:09Z cellular_component owl:Class GO:0034438 biolink:NamedThing lipoprotein amino acid oxidation The modification of a lipoprotein by oxidation of one or more amino acids in the protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018158 biolink:NamedThing protein oxidation The modification of a protein amino acid by oxidation. tmpzr1t_l9r_go_relaxed.owl protein amino acid oxidation biological_process owl:Class GO:2001130 biolink:NamedThing methane biosynthetic process from trimethylamine The chemical reactions and pathways resulting in the formation of a methane from a trimethylamine. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T10:28:03Z biological_process owl:Class GO:0009308 biolink:NamedThing amine metabolic process The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. tmpzr1t_l9r_go_relaxed.owl amine metabolism biological_process owl:Class GO:0072100 biolink:NamedThing specification of ureteric bud anterior/posterior symmetry The establishment of the ureteric bud such that there is a similar arrangement in form and relationship of parts along its anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl specification of ureteric bud anterior/posterior asymmetry mah 2010-02-10T02:18:16Z biological_process owl:Class GO:0009799 biolink:NamedThing specification of symmetry The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. tmpzr1t_l9r_go_relaxed.owl determination of symmetry biological_process owl:Class GO:0031542 biolink:NamedThing positive regulation of anthocyanin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. tmpzr1t_l9r_go_relaxed.owl up regulation of anthocyanin biosynthetic process|up-regulation of anthocyanin biosynthetic process|upregulation of anthocyanin biosynthetic process|positive regulation of anthocyanin anabolism|positive regulation of anthocyanin biosynthesis|stimulation of anthocyanin biosynthetic process|positive regulation of anthocyanin formation|positive regulation of anthocyanin synthesis|activation of anthocyanin biosynthetic process biological_process owl:Class GO:0009963 biolink:NamedThing positive regulation of flavonoid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. tmpzr1t_l9r_go_relaxed.owl up-regulation of flavonoid biosynthetic process|positive regulation of flavonoid biosynthesis|upregulation of flavonoid biosynthetic process|stimulation of flavonoid biosynthetic process|activation of flavonoid biosynthetic process|positive regulation of flavonoid anabolism|up regulation of flavonoid biosynthetic process|positive regulation of flavonoid formation|positive regulation of flavonoid synthesis biological_process owl:Class GO:1902030 biolink:NamedThing negative regulation of histone H3-K18 acetylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K18 acetylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3-K18 acetylation|negative regulation of histone H3K18 acetylation|down-regulation of histone H3K18 acetylation|downregulation of histone H3-K18 acetylation|inhibition of histone H3 acetylation at K18|down-regulation of histone H3 acetylation at K18|downregulation of histone H3 acetylation at K18|down regulation of histone H3 acetylation at K18|down regulation of histone H3-K18 acetylation|negative regulation of histone H3 acetylation at K18|inhibition of histone H3-K18 acetylation|inhibition of histone H3K18 acetylation|down regulation of histone H3K18 acetylation|downregulation of histone H3K18 acetylation jl 2013-03-28T20:19:39Z biological_process owl:Class GO:1902028 biolink:NamedThing regulation of histone H3-K18 acetylation Any process that modulates the frequency, rate or extent of histone H3-K18 acetylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3 acetylation at K18|regulation of histone H3K18 acetylation jl 2013-03-28T20:17:39Z biological_process owl:Class GO:1902691 biolink:NamedThing respiratory basal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a respiratory basal cell. tmpzr1t_l9r_go_relaxed.owl airway basal cell differentiation Changes in the lineage choice of ABCs or their undifferentiated daughters might contribute to the mucous cell hyperplasia, metaplasia or squamous metaplasia seen in many respiratory disorders cjm 2014-02-13T23:41:24Z biological_process owl:Class GO:0030855 biolink:NamedThing epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080098 biolink:NamedThing L-tyrosine:pyruvate aminotransferase activity Catalysis of the reaction: L-tyrosine + pyruvate = (4-hydroxyphenyl)pyruvate + L-alanine. tmpzr1t_l9r_go_relaxed.owl EC:2.6.1.58|MetaCyc:RXN3O-4157 dhl 2009-04-23T03:47:53Z molecular_function owl:Class GO:0071351 biolink:NamedThing cellular response to interleukin-18 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-18 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-18 mah 2009-12-11T02:50:03Z biological_process owl:Class GO:0070673 biolink:NamedThing response to interleukin-18 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-18 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-18 mah 2009-05-29T10:03:52Z biological_process owl:Class GO:1990605 biolink:NamedThing GU repeat RNA binding Binding to an RNA molecule containing GU repeats. tmpzr1t_l9r_go_relaxed.owl al 2015-01-13T18:18:01Z molecular_function owl:Class GO:1905401 biolink:NamedThing positive regulation of activated CD4-positive, alpha-beta T cell apoptotic process Any process that activates or increases the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|up regulation of activated CD4-positive, alpha-beta T cell apoptotic process|up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|upregulation of activated CD4-positive, alpha-beta T cell apoptotic process|up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|up regulation of activated CD4-positive, alpha-beta T cell apoptosis|up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|up-regulation of activated CD4-positive, alpha-beta T-cell apoptosis|upregulation of activated CD4-positive, alpha-beta T cell apoptosis|activation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|activation of activated CD4-positive, alpha-beta T-cell apoptotic process|upregulation of activated CD4-positive, alpha-beta T-cell apoptotic process|positive regulation of activated CD4-positive, alpha-beta T-cell apoptosis|up regulation of activated CD4-positive, alpha-beta T-cell apoptosis|positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|activation of activated CD4-positive, alpha-beta T-cell apoptosis|activation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|positive regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|up-regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|up regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|activation of activated CD4-positive, alpha-beta T cell apoptosis|up-regulation of activated CD4-positive, alpha-beta T cell apoptosis|up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|positive regulation of activated CD4-positive, alpha-beta T cell apoptosis|activation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|upregulation of activated CD4-positive, alpha-beta T-cell apoptosis|upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|activation of activated CD4-positive, alpha-beta T cell apoptotic process|positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|activation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|up-regulation of activated CD4-positive, alpha-beta T cell apoptotic process|up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis pga 2016-08-25T09:10:00Z biological_process owl:Class GO:0009181 biolink:NamedThing purine ribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside diphosphate catabolism|purine ribonucleoside diphosphate degradation|purine ribonucleoside diphosphate breakdown biological_process owl:Class GO:0009137 biolink:NamedThing purine nucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside diphosphate degradation|purine nucleoside diphosphate breakdown|purine nucleoside diphosphate catabolism biological_process owl:Class GO:0070953 biolink:NamedThing regulation of neutrophil mediated killing of fungus Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a fungal cell, the directed killing of a fungal cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-01T02:14:36Z biological_process owl:Class GO:1900150 biolink:NamedThing regulation of defense response to fungus Any process that modulates the frequency, rate or extent of defense response to fungus. tmpzr1t_l9r_go_relaxed.owl regulation of resistance response to pathogenic fungus|regulation of defense response to fungus, incompatible interaction|regulation of defense response to fungi, incompatible interaction|regulation of response to pathogenic fungus (incompatible interaction)|regulation of defence response to fungi|regulation of defense response to fungi|regulation of resistance response to pathogenic fungi|regulation of defence response to fungus dhl 2012-03-06T10:00:16Z GO:2000072 biological_process owl:Class GO:0001675 biolink:NamedThing acrosome assembly The formation of the acrosome from the spermatid Golgi. tmpzr1t_l9r_go_relaxed.owl acrosome formation biological_process owl:Class GO:0009236 biolink:NamedThing cobalamin biosynthetic process The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. tmpzr1t_l9r_go_relaxed.owl cobalamin biosynthesis|cobalamin synthesis|vitamin B12 biosynthesis|cobalamin formation|cobalamin anabolism|vitamin B12 biosynthetic process biological_process owl:Class GO:0018182 biolink:NamedThing protein-heme linkage via 3'-L-histidine The covalent linkage of heme and a protein via 3'-L-histidine (otherwise known as pi-heme-histidine, pros-heme-histidine). tmpzr1t_l9r_go_relaxed.owl protein-haem linkage via 3'-L-histidine RESID:AA0276 biological_process owl:Class GO:0018873 biolink:NamedThing atrazine metabolic process The chemical reactions and pathways involving atrazine, a triazine ring-containing compound, widely used as a herbicide. tmpzr1t_l9r_go_relaxed.owl atrazine metabolism UM-BBD_pathwayID:atr biological_process owl:Class GO:0060600 biolink:NamedThing dichotomous subdivision of an epithelial terminal unit The process in which an epithelial cord, rod or tube bifurcates at its end. tmpzr1t_l9r_go_relaxed.owl primary branching of an epithelium dph 2009-05-14T02:14:50Z biological_process owl:Class GO:0019062 biolink:NamedThing virion attachment to host cell The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection. tmpzr1t_l9r_go_relaxed.owl virion attachment to host cell surface receptor|viral absorption|viral attachment to host cell VZ:956 biological_process owl:Class GO:0044650 biolink:NamedThing adhesion of symbiont to host cell The attachment of a symbiont to a host cell via adhesion molecules, general stickiness etc., either directly or indirectly. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-12T12:42:14Z biological_process owl:Class GO:0043188 biolink:NamedThing cell septum edging The cell wall material that surrounds the septum in fungal cells. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904827 biolink:NamedThing negative regulation of hydrogen sulfide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen sulfide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of hydrogen sulfide biosynthesis|inhibition of hydrogen sulfide formation|down regulation of hydrogen sulphide biosynthetic process|negative regulation of hydrogen sulfide synthesis|down regulation of hydrogen sulfide biosynthetic process|down-regulation of hydrogen sulphide biosynthetic process|down-regulation of hydrogen sulfide anabolism|inhibition of hydrogen sulphide biosynthesis|negative regulation of hydrogen sulphide biosynthetic process|down regulation of hydrogen sulfide formation|down regulation of hydrogen sulfide biosynthesis|down regulation of hydrogen sulfide synthesis|downregulation of hydrogen sulfide synthesis|inhibition of hydrogen sulfide biosynthetic process|down-regulation of hydrogen sulfide biosynthesis|down regulation of hydrogen sulfide anabolism|negative regulation of hydrogen sulphide biosynthesis|downregulation of hydrogen sulfide anabolism|negative regulation of hydrogen sulfide biosynthesis|negative regulation of hydrogen sulfide anabolism|downregulation of hydrogen sulphide biosynthetic process|down-regulation of hydrogen sulphide biosynthesis|down-regulation of hydrogen sulfide formation|inhibition of hydrogen sulfide synthesis|downregulation of hydrogen sulfide biosynthetic process|inhibition of hydrogen sulphide biosynthetic process|down-regulation of hydrogen sulfide biosynthetic process|downregulation of hydrogen sulfide formation|inhibition of hydrogen sulfide anabolism|downregulation of hydrogen sulfide biosynthesis|down-regulation of hydrogen sulfide synthesis|negative regulation of hydrogen sulfide formation|down regulation of hydrogen sulphide biosynthesis|downregulation of hydrogen sulphide biosynthesis rph 2015-11-24T10:15:34Z biological_process owl:Class GO:0051175 biolink:NamedThing negative regulation of sulfur metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur. tmpzr1t_l9r_go_relaxed.owl inhibition of sulfur metabolic process|negative regulation of sulphur metabolic process|down-regulation of sulfur metabolic process|down regulation of sulfur metabolic process|downregulation of sulfur metabolic process|negative regulation of sulfur metabolism|negative regulation of sulphur metabolism biological_process owl:Class GO:0033685 biolink:NamedThing negative regulation of luteinizing hormone secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of luteinizing hormone. tmpzr1t_l9r_go_relaxed.owl down regulation of luteinizing hormone secretion|downregulation of luteinizing hormone secretion|inhibition of luteinizing hormone secretion|down-regulation of luteinizing hormone secretion biological_process owl:Class GO:0033684 biolink:NamedThing regulation of luteinizing hormone secretion Any process that modulates the frequency, rate or extent of the regulated release of luteinizing hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009902 biolink:NamedThing chloroplast relocation The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. tmpzr1t_l9r_go_relaxed.owl chloroplast movement biological_process owl:Class GO:0038001 biolink:NamedThing paracrine signaling The transfer of information from one cell to another, where the signal travels from the signal-producing cell to the receiving cell by passive diffusion or bulk flow in intercellular fluid. The signaling cell and the receiving cell are usually in the vicinity of each other. tmpzr1t_l9r_go_relaxed.owl paracrine signalling This term should be used with caution, and only used when the signaling between cells has been clearly distinguished from endocrine signaling. bf 2011-02-25T02:11:00Z biological_process owl:Class GO:0007267 biolink:NamedThing cell-cell signaling Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling biological_process owl:Class GO:0001594 biolink:NamedThing trace-amine receptor activity Combining with a trace amine to initiate a change in cell activity. Trace amines are biogenic amines that are synthesized from aromatic amino acids and are substrates for monoamine oxidase, and are therefore detectable only at trace levels in mammals. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008227 biolink:NamedThing G protein-coupled amine receptor activity Combining with an extracellular amine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled amine receptor activity|amine receptor activity, G-protein coupled|biogenic amine receptor molecular_function owl:Class GO:0019646 biolink:NamedThing aerobic electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl ubiquinone-8-O2 electron transport|succinate-O2 electron transport|NADH-O2 electron transport GO:0006137|GO:0006136|GO:0006138 biological_process owl:Class GO:0102058 biolink:NamedThing jasmonoyl-leucine synthetase activity Catalysis of the reaction: L-leucine + ATP(4-) + a jasmonic acid <=> AMP(2-) + diphosphoric acid + a jasmonoyl-leucine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10459|EC:6.3.2.52|RHEA:55772 molecular_function owl:Class GO:0042419 biolink:NamedThing epinephrine catabolic process The chemical reactions and pathways resulting in the breakdown of epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. tmpzr1t_l9r_go_relaxed.owl epinephrine catabolism|adrenaline catabolism|epinephrine breakdown|adrenaline catabolic process|epinephrine degradation biological_process owl:Class GO:0042424 biolink:NamedThing catecholamine catabolic process The chemical reactions and pathways resulting in the breakdown of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. tmpzr1t_l9r_go_relaxed.owl catecholamine degradation|catecholamine catabolism|catecholamine breakdown biological_process owl:Class GO:0005164 biolink:NamedThing tumor necrosis factor receptor binding Binding to a tumor necrosis factor receptor. tmpzr1t_l9r_go_relaxed.owl TNF receptor binding|tumor necrosis factor|tumor necrosis factor receptor ligand molecular_function owl:Class GO:0032813 biolink:NamedThing tumor necrosis factor receptor superfamily binding Binding to a member of the tumor necrosis factor receptor superfamily. tmpzr1t_l9r_go_relaxed.owl TNF receptor superfamily binding molecular_function owl:Class GO:1902155 biolink:NamedThing regulation of response to G1 DNA damage checkpoint signaling Any process that modulates the frequency, rate or extent of response to G1 DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process jl 2013-05-21T15:44:53Z biological_process owl:Class GO:1902153 biolink:NamedThing regulation of response to DNA damage checkpoint signaling Any process that modulates the frequency, rate or extent of response to DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of DNA damage checkpoint effector process|regulation of response to signal involved in DNA damage checkpoint jl 2013-05-21T15:44:39Z biological_process owl:Class GO:0007218 biolink:NamedThing neuropeptide signaling pathway The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl neuropeptide signalling pathway biological_process owl:Class GO:1905131 biolink:NamedThing carcinine transmembrane transporter activity Enables the transfer of carcinine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl dph 2016-04-12T15:18:25Z molecular_function owl:Class GO:1902385 biolink:NamedThing glycyrrhetinate catabolic process The chemical reactions and pathways resulting in the breakdown of glycyrrhetinate. tmpzr1t_l9r_go_relaxed.owl glycyrrhetinate breakdown|glycyrrhetinate degradation|glycyrrhetinate catabolism ms 2013-09-03T12:56:10Z biological_process owl:Class GO:0052544 biolink:NamedThing defense response by callose deposition in cell wall Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. tmpzr1t_l9r_go_relaxed.owl cell wall callose localization during defense response|cell wall callose deposition during defense response|callose localization in cell wall during defense response|callose deposition in cell wall during defense response biological_process owl:Class GO:0052482 biolink:NamedThing defense response by cell wall thickening A type of cell wall modification, in which the cell wall is reinforced and made thicker, that occurs as part of the defense response of an organism. tmpzr1t_l9r_go_relaxed.owl cell wall thickening during defense response biological_process owl:Class GO:1902243 biolink:NamedThing copal-8-ol diphosphate(3-) biosynthetic process The chemical reactions and pathways resulting in the formation of copal-8-ol diphosphate(3-). tmpzr1t_l9r_go_relaxed.owl copal-8-ol diphosphate(3-) biosynthesis|copal-8-ol diphosphate(3-) synthesis|copal-8-ol diphosphate(3-) formation|copal-8-ol diphosphate(3-) anabolism ms 2013-06-20T09:09:38Z biological_process owl:Class GO:0018235 biolink:NamedThing peptidyl-lysine carboxylation The modification of peptidyl-lysine to form peptidyl-N6-carboxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0114 biological_process owl:Class GO:0021959 biolink:NamedThing cuneatus tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the dorsal root ganglion towards target cells in the medulla. This axonal process is a member of those that make up the cuneatus tract, a group of axons that are from neurons involved in proprioception from the upper trunk and upper limb. tmpzr1t_l9r_go_relaxed.owl tract of Burdach morphogenesis biological_process owl:Class GO:0045725 biolink:NamedThing positive regulation of glycogen biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen. tmpzr1t_l9r_go_relaxed.owl up-regulation of glycogen biosynthetic process|positive regulation of glycogen biosynthesis|up regulation of glycogen biosynthetic process|positive regulation of glycogen formation|positive regulation of glycogen synthesis|upregulation of glycogen biosynthetic process|activation of glycogen biosynthetic process|stimulation of glycogen biosynthetic process|positive regulation of glycogen anabolism biological_process owl:Class GO:0005979 biolink:NamedThing regulation of glycogen biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen. tmpzr1t_l9r_go_relaxed.owl regulation of glycogen formation|regulation of glycogen biosynthesis|regulation of glycogen synthesis|regulation of glycogen anabolism biological_process owl:Class GO:0004895 biolink:NamedThing cell adhesion receptor activity The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to the external substrate or to another cell and to initiate intracellular signaling. Cell adhesion receptors include integrins and cadherins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15237 Reinstated term from obsolete. molecular_function owl:Class GO:0098631 biolink:NamedThing cell adhesion mediator activity The binding by a cell-adhesion protein on a cell surface to an adhesion molecule on another cell surface, to mediate adhesion of the cell to the external substrate or to another cell. tmpzr1t_l9r_go_relaxed.owl cell adhesion molecule|protein binding involved in cell adhesion molecular_function owl:Class GO:0009153 biolink:NamedThing purine deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleotide formation|purine deoxyribonucleotide synthesis|purine deoxyribonucleotide biosynthesis|purine deoxyribonucleotide anabolism biological_process owl:Class GO:1900896 biolink:NamedThing regulation of heptadecane biosynthetic process Any process that modulates the frequency, rate or extent of heptadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of heptadecane anabolism|regulation of heptadecane synthesis|regulation of heptadecane formation|regulation of heptadecane biosynthesis tt 2012-06-13T03:27:38Z biological_process owl:Class GO:1900899 biolink:NamedThing regulation of heptadecane metabolic process Any process that modulates the frequency, rate or extent of heptadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of heptadecane metabolism tt 2012-06-13T03:30:03Z biological_process owl:Class GO:0010732 biolink:NamedThing regulation of protein glutathionylation Any process that modulates the rate, frequency, or extent of protein glutathionylation. Protein glutathionylation is the protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid glutathionylation biological_process owl:Class GO:0021674 biolink:NamedThing rhombomere 8 morphogenesis The process in which the anatomical structure of rhombomere 8 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021593 biolink:NamedThing rhombomere morphogenesis The process in which the anatomical structure of the rhombomere is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050854 biolink:NamedThing regulation of antigen receptor-mediated signaling pathway Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell. tmpzr1t_l9r_go_relaxed.owl regulation of antigen receptor mediated signalling pathway biological_process owl:Class GO:0033543 biolink:NamedThing fatty acid beta-oxidation, unsaturated, even number, reductase/isomerase pathway A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. In this pathway, the intermediate 2,4-dienoyl-CoA is converted to trans-2-enoyl-CoA by 2,4-dienoyl-CoA reductase and delta3-delta2-enoyl-CoA isomerase; trans-2-enoyl-CoA returns to the core beta-oxidation pathway for further degradation. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033542 biolink:NamedThing fatty acid beta-oxidation, unsaturated, even number A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5138 biological_process owl:Class GO:0034334 biolink:NamedThing adherens junction maintenance The maintenance of an adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045217 biolink:NamedThing cell-cell junction maintenance The maintenance of junctions between cells. tmpzr1t_l9r_go_relaxed.owl intercellular junction maintenance biological_process owl:Class GO:0032390 biolink:NamedThing MutLbeta complex A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MLH1 and PMS1. tmpzr1t_l9r_go_relaxed.owl MMR complex|MLH1/PMS1 complex cellular_component owl:Class GO:0032300 biolink:NamedThing mismatch repair complex Any complex formed of proteins that act in mismatch repair. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042157 biolink:NamedThing lipoprotein metabolic process The chemical reactions and pathways involving any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl lipoprotein metabolism biological_process owl:Class GO:0110042 biolink:NamedThing negative regulation of pharynx morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of pharynx morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T21:05:08Z biological_process owl:Class GO:0010129 biolink:NamedThing anaerobic cyclohexane-1-carboxylate catabolic process The chemical reactions and pathways resulting in the breakdown of cyclohexane-1-carboxylate, a alicyclic acid, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic cyclohexane-1-carboxylate breakdown|anaerobic cyclohexane-1-carboxylate catabolism|anaerobic cyclohexane-1-carboxylate degradation MetaCyc:PWY-301 biological_process owl:Class GO:0102982 biolink:NamedThing UDP-3-dehydro-alpha-D-glucose dehydrogenase activity Catalysis of the reaction: UDP-alpha-D-glucose + NAD <=> H+ + UDP-3-keto-alpha-D-glucose + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:35755|MetaCyc:RXN-9578 molecular_function owl:Class GO:0016168 biolink:NamedThing chlorophyll binding Binding to a chlorophyll; a compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046906 biolink:NamedThing tetrapyrrole binding Binding to a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position. tmpzr1t_l9r_go_relaxed.owl porphyrin binding molecular_function owl:Class GO:0002701 biolink:NamedThing negative regulation of production of molecular mediator of immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of the production of molecular mediator of immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of production of molecular mediator of immune response|down regulation of production of molecular mediator of immune response|downregulation of production of molecular mediator of immune response|down-regulation of production of molecular mediator of immune response biological_process owl:Class GO:0030171 biolink:NamedThing voltage-gated proton channel activity Enables the transmembrane transfer of a proton by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage gated proton channel activity|voltage-dependent proton channel activity molecular_function owl:Class GO:0015252 biolink:NamedThing proton channel activity Enables the facilitated diffusion of a hydrogen ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl hydrogen ion channel activity molecular_function owl:Class GO:0007288 biolink:NamedThing sperm axoneme assembly The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903364 biolink:NamedThing positive regulation of cellular protein catabolic process Any process that activates or increases the frequency, rate or extent of cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular protein breakdown|positive regulation of cyclin catabolic process|positive regulation of cyclin breakdown|up-regulation of cellular protein catabolism|positive regulation of cellular protein breakdown|positive regulation of cellular protein catabolism|up regulation of cellular protein catabolism|positive regulation of cyclin degradation|positive regulation of degradation of cyclin|activation of cellular protein degradation|activation of cellular protein catabolism|positive regulation of cellular protein degradation|up regulation of cellular protein catabolic process|activation of cellular protein breakdown|positive regulation of cyclin catabolism|up regulation of cellular protein degradation|up-regulation of cellular protein catabolic process|upregulation of cellular protein breakdown|up-regulation of cellular protein degradation|up-regulation of cellular protein breakdown|activation of cellular protein catabolic process|upregulation of cellular protein degradation|upregulation of cellular protein catabolic process|upregulation of cellular protein catabolism kmv 2014-08-21T15:06:01Z GO:2000600 biological_process owl:Class GO:1903362 biolink:NamedThing regulation of cellular protein catabolic process Any process that modulates the frequency, rate or extent of cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cyclin catabolism|regulation of cellular protein breakdown|regulation of degradation of cyclin|regulation of cellular protein degradation|regulation of cyclin breakdown|regulation of cyclin catabolic process|regulation of cellular protein catabolism|regulation of cyclin degradation kmv 2014-08-21T15:05:45Z GO:2000598 biological_process owl:Class GO:0016817 biolink:NamedThing hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement EC:3.6.-.- molecular_function owl:Class GO:0061256 biolink:NamedThing mesonephric glomerular visceral epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a mesonephric glomerular visceral epithelial cell. A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:03:38Z biological_process owl:Class GO:1904244 biolink:NamedThing positive regulation of pancreatic trypsinogen secretion Any process that activates or increases the frequency, rate or extent of pancreatic trypsinogen secretion. tmpzr1t_l9r_go_relaxed.owl activation of pancreatic trypsinogen secretion|upregulation of pancreatic trypsinogen secretion|up-regulation of pancreatic trypsinogen release|up regulation of pancreatic trypsinogen secretion|activation of pancreatic trypsinogen release|positive regulation of pancreatic trypsinogen release|up regulation of pancreatic trypsinogen release|upregulation of pancreatic trypsinogen release|up-regulation of pancreatic trypsinogen secretion sl 2015-05-18T19:49:32Z biological_process owl:Class GO:0047441 biolink:NamedThing 5-dehydro-2-deoxyphosphogluconate aldolase activity Catalysis of the reaction: 6-phospho-5-dehydro-2-deoxy-D-gluconate = 3-oxopropanoate + glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl phospho-5-dehydro-2-deoxygluconate aldolase activity|phospho-5-keto-2-deoxygluconate aldolase activity|5-dehydro-2-deoxy-D-gluconate-6-phosphate malonate-semialdehyde-lyase activity|5-dehydro-2-deoxy-D-gluconate-6-phosphate malonate-semialdehyde-lyase (pyruvate-forming) RHEA:13177|KEGG_REACTION:R05378|MetaCyc:4.1.2.29-RXN|EC:4.1.2.29 molecular_function owl:Class GO:0050762 biolink:NamedThing depsipeptide catabolic process The chemical reactions and pathways resulting in the breakdown of depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively. tmpzr1t_l9r_go_relaxed.owl depsipeptide catabolism|depsipeptide degradation|depsipeptide breakdown biological_process owl:Class GO:2000423 biolink:NamedThing negative regulation of eosinophil chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-24T01:17:12Z biological_process owl:Class GO:2001283 biolink:NamedThing Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell Any Roundabout signaling pathway that is involved in the directed movement of a muscle cell towards a tendon cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl Roundabout signalling pathway involved in muscle cell chemotaxis toward tendon cell|ROBO/SLIT signaling pathway involved in muscle cell chemotaxis towards tendon cell|ROBO/SLIT signaling pathway involved in muscle cell attraction|Roundabout signalling pathway involved in muscle cell attraction|ROBO signaling pathway involved in muscle cell chemotaxis toward tendon cell|Roundabout signaling pathway involved in muscle cell attraction|ROBO signaling pathway involved in muscle cell chemotaxis towards tendon cell|ROBO/SLIT signaling pathway involved in muscle cell chemotaxis toward tendon cell|Roundabout signalling pathway involved in muscle cell chemotaxis towards tendon cell|Roundabout signaling pathway involved in muscle cell chemotaxis towards tendon cell|ROBO signaling pathway involved in muscle cell attraction bf 2011-12-15T10:42:03Z biological_process owl:Class GO:0035385 biolink:NamedThing Roundabout signaling pathway A series of molecular signals initiated by the binding of a SLIT protein to a Roundabout (ROBO) family receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl Roundabout signalling pathway|ROBO/SLIT signaling pathway|ROBO signaling pathway bf 2010-03-18T02:38:31Z biological_process owl:Class GO:0044283 biolink:NamedThing small molecule biosynthetic process The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. tmpzr1t_l9r_go_relaxed.owl small molecule biosynthesis Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. jl 2010-01-26T12:06:49Z biological_process owl:Class GO:0008681 biolink:NamedThing 2-octaprenyl-6-methoxyphenol hydroxylase activity Catalysis of the reaction: 2-octaprenyl-6-methoxyphenol + O2 + 4 H+ = 2-octaprenyl-6-methoxy-1,4-benzoquinol + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:29407|MetaCyc:2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN molecular_function owl:Class GO:0035499 biolink:NamedThing carnosine biosynthetic process The chemical reactions and pathways resulting in the formation of the dipeptide beta-alanyl-L-histidine (carnosine). tmpzr1t_l9r_go_relaxed.owl carnosine formation|carnosine biosynthesis|carnosine anabolism|carnosine synthesis bf 2010-04-29T01:20:56Z biological_process owl:Class GO:0043043 biolink:NamedThing peptide biosynthetic process The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. tmpzr1t_l9r_go_relaxed.owl peptide formation|peptide biosynthesis|peptide synthesis|peptide anabolism biological_process owl:Class GO:0016145 biolink:NamedThing S-glycoside catabolic process The chemical reactions and pathways resulting in the breakdown of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. tmpzr1t_l9r_go_relaxed.owl thioglycoside catabolism|thioglycoside catabolic process|S-glycoside breakdown|S-glycoside catabolism|S-glycoside degradation biological_process owl:Class GO:1903471 biolink:NamedThing regulation of mitotic actomyosin contractile ring contraction Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring contraction. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic actomyosin contractile ring constriction|regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle https://github.com/geneontology/go-ontology/issues/21855 vw 2014-09-23T14:10:22Z biological_process owl:Class GO:1903436 biolink:NamedThing regulation of mitotic cytokinetic process Any process that modulates the frequency, rate or extent of mitotic cytokinetic process. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-15T23:11:38Z biological_process owl:Class GO:1900864 biolink:NamedThing mitochondrial RNA modification Any RNA modification that takes place in mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA editing tb 2012-06-11T10:49:56Z biological_process owl:Class GO:0009451 biolink:NamedThing RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl RNA editing Wikipedia:RNA_editing The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. GO:0016547 biological_process owl:Class GO:0051293 biolink:NamedThing establishment of spindle localization The directed movement of the spindle to a specific location in the cell. tmpzr1t_l9r_go_relaxed.owl spindle positioning|establishment of spindle localisation biological_process owl:Class GO:0051653 biolink:NamedThing spindle localization Any process in which is the spindle is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl spindle localisation|establishment and maintenance of spindle localization biological_process owl:Class GO:0071330 biolink:NamedThing cellular response to trehalose-6-phosphate stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:32:52Z biological_process owl:Class GO:0071324 biolink:NamedThing cellular response to disaccharide stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:26:14Z biological_process owl:Class GO:0072742 biolink:NamedThing SAGA complex localization to transcription regulatory region Any process in which a SAGA complex is transported to, or maintained in, a specific location in the transcription regulatory region of a gene. tmpzr1t_l9r_go_relaxed.owl SAGA complex localization to promoter|SAGA complex recruitment mah 2012-08-24T10:36:03Z biological_process owl:Class GO:0032462 biolink:NamedThing regulation of protein homooligomerization Any process that modulates the frequency, rate or extent of protein homooligomerization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032459 biolink:NamedThing regulation of protein oligomerization Any process that modulates the frequency, rate or extent of protein oligomerization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036171 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to chemical stimulus The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-27T03:53:28Z biological_process owl:Class GO:2000110 biolink:NamedThing negative regulation of macrophage apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of AICD|negative regulation of macrophage apoptosis|negative regulation of activation-induced cell death mah 2010-09-15T01:44:18Z biological_process owl:Class GO:0003677 biolink:NamedThing DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). tmpzr1t_l9r_go_relaxed.owl microtubule/chromatin interaction|plasmid binding|structure specific DNA binding|structure-specific DNA binding GO:0043566 molecular_function owl:Class GO:0006379 biolink:NamedThing mRNA cleavage Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. tmpzr1t_l9r_go_relaxed.owl cleavage stimulation factor activity biological_process owl:Class GO:0016071 biolink:NamedThing mRNA metabolic process The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. tmpzr1t_l9r_go_relaxed.owl mRNA metabolism biological_process owl:Class GO:0035406 biolink:NamedThing histone-tyrosine phosphorylation The modification of histones by addition of a phosphate group to a tyrosine residue. tmpzr1t_l9r_go_relaxed.owl histone tyrosine phosphorylation bf 2010-03-24T10:10:16Z biological_process owl:Class GO:0016572 biolink:NamedThing histone phosphorylation The modification of histones by addition of phosphate groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010919 biolink:NamedThing regulation of inositol phosphate biosynthetic process Any process that modulates the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl regulation of inositol phosphate biosynthesis biological_process owl:Class GO:0043255 biolink:NamedThing regulation of carbohydrate biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of carbohydrates. tmpzr1t_l9r_go_relaxed.owl regulation of carbohydrate synthesis|regulation of carbohydrate anabolism|regulation of carbohydrate formation|regulation of carbohydrate biosynthesis biological_process owl:Class GO:1902128 biolink:NamedThing (-)-lariciresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-lariciresinol degradation|(-)-lariciresinol breakdown|(-)-lariciresinol catabolism ms 2013-05-21T08:49:38Z biological_process owl:Class GO:0046273 biolink:NamedThing lignan catabolic process The chemical reactions and pathways resulting in the breakdown of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist. tmpzr1t_l9r_go_relaxed.owl lignan degradation|lignan breakdown|lignan catabolism biological_process owl:Class GO:1902130 biolink:NamedThing (+)-lariciresinol metabolic process The chemical reactions and pathways involving (+)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-lariciresinol metabolism ms 2013-05-21T08:49:49Z biological_process owl:Class GO:0009231 biolink:NamedThing riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). tmpzr1t_l9r_go_relaxed.owl vitamin B2 biosynthetic process|riboflavin formation|vitamin G biosynthetic process|riboflavin synthesis|riboflavin anabolism|riboflavin biosynthesis|vitamin B2 biosynthesis|vitamin G biosynthesis Wikipedia:Riboflavin|MetaCyc:RIBOSYN2-PWY biological_process owl:Class GO:0006771 biolink:NamedThing riboflavin metabolic process The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). tmpzr1t_l9r_go_relaxed.owl vitamin G metabolic process|vitamin B2 metabolic process|riboflavin metabolism|vitamin B2 metabolism|vitamin G metabolism Wikipedia:Riboflavin biological_process owl:Class GO:0061287 biolink:NamedThing mesonephric capsule formation The developmental process pertaining to the initial formation of a mesonephric capsule from unspecified parts. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:55:03Z biological_process owl:Class GO:0072129 biolink:NamedThing renal capsule formation The developmental process pertaining to the initial formation of a renal capsule from unspecified parts. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:08:14Z biological_process owl:Class GO:0060610 biolink:NamedThing mesenchymal cell differentiation involved in mammary gland development The process in which a relatively unspecialized cell acquires specialized features of a mammary gland mesenchymal cell. Mammary gland mesenchymal cells form a loosely connected network of cells that surround the mammary ducts. tmpzr1t_l9r_go_relaxed.owl mammary gland mesenchymal cell differentiation dph 2009-05-15T12:17:06Z biological_process owl:Class GO:0048762 biolink:NamedThing mesenchymal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902794 biolink:NamedThing siRNA-independent facultative heterochromatin assembly The assembly of facultative heterochromatin to form a heterochromatin domain, enriched in histone H3 methylated on lysine 9 (H3K9me), by a process independent of small interfering RNAs. tmpzr1t_l9r_go_relaxed.owl heterochromatin island formation|heterochromatin island assembly https://github.com/geneontology/go-ontology/issues/22326 mah 2014-03-24T12:46:49Z biological_process owl:Class GO:0140718 biolink:NamedThing facultative heterochromatin assembly The assembly of facultative heterochromatin, heterochromatin that can be converted to euchromatin and allow transcription under specific contexts. These can be temporal (e.g., developmental states or specific cell-cycle stages), spatial (e.g., nuclear localization changes from the center to the periphery or vice versa due to exogenous factors/signals), or parental/heritable (e.g., monoallelic gene expression). tmpzr1t_l9r_go_relaxed.owl fHC assembly https://github.com/geneontology/go-ontology/issues/22325 pg 2021-10-29T13:40:47Z biological_process owl:Class GO:1902924 biolink:NamedThing poly(hydroxyalkanoate) biosynthetic process from glucose The chemical reactions and pathways resulting in the formation of poly(hydroxyalkanoate) from glucose. tmpzr1t_l9r_go_relaxed.owl poly(hydroxyalkanoate) biosynthesis from glucose|poly(hydroxyalkanoate) synthesis from glucose|poly(hydroxyalkanoate) formation from glucose|poly(hydroxyalkanoate) anabolism from glucose tt 2014-04-21T22:49:07Z biological_process owl:Class GO:0039502 biolink:NamedThing suppression by virus of host type I interferon-mediated signaling pathway Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl inhibition of host interferon signaling pathway by virus|negative regulation by virus of host type I interferon-mediated signaling pathway|suppression by virus of host type I IFN-mediated signaling pathway|suppression by virus of host type I interferon-mediated signalling pathway VZ:883 bf 2011-05-11T04:06:28Z biological_process owl:Class GO:0046640 biolink:NamedThing regulation of alpha-beta T cell proliferation Any process that modulates the frequency, rate or extent of alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-beta T lymphocyte proliferation|regulation of alpha-beta T-cell proliferation|regulation of alpha-beta T-lymphocyte proliferation biological_process owl:Class GO:0046634 biolink:NamedThing regulation of alpha-beta T cell activation Any process that modulates the frequency, rate or extent of alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-beta T-lymphocyte activation|regulation of alpha-beta T-cell activation|regulation of alpha-beta T lymphocyte activation biological_process owl:Class GO:0007287 biolink:NamedThing Nebenkern assembly Fusion of mitochondria during insect spermatid differentiation to form two masses, which wrap around each other to form a densely packed sphere called the Nebenkern. tmpzr1t_l9r_go_relaxed.owl Nebenkern formation See also the cellular component term 'Nebenkern ; GO:0016006', and the fly_anatomy.ontology term 'Nebenkern ; FBbt:00004943'. biological_process owl:Class GO:0035583 biolink:NamedThing sequestering of TGFbeta in extracellular matrix Confining TGFbeta to the extracellular matrix (ECM) such that it is separated from other components of the signaling pathway, including its cell surface receptor. TGFbeta is secreted as part of a latent complex that is targeted to the extracellular matrix through latent-TGFbeta-binding protein (LTBP)-mediated association with matrix proteins. tmpzr1t_l9r_go_relaxed.owl negative regulation of transforming growth factor beta receptor signaling pathway by extracellular matrix sequestering of TGFbeta|sequestering of TGFbeta LLC in extracellular matrix|negative regulation of transforming growth factor beta receptor signalling pathway by extracellular matrix sequestering of TGFbeta|sequestering of TGFbeta large latency complex in extracellular matrix bf 2010-10-12T03:13:29Z biological_process owl:Class GO:0098816 biolink:NamedThing mini excitatory postsynaptic potential A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060079 biolink:NamedThing excitatory postsynaptic potential A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl regulation of EPSP|regulation of excitatory post-synaptic membrane potential biological_process owl:Class GO:0018226 biolink:NamedThing peptidyl-S-farnesyl-L-cysteine biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form peptidyl-S-farnesyl-L-cysteine; formation of S-farnesycysteine may be coupled with subsequent cleavage of a carboxy-terminal tripeptide for the CXXX motif and methyl esterification of the farnesylated cysteine; the residue may be found at the first position in the sequence motif C-X-X-(SAQCMT)* where the second and third positions are usually aliphatic. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-farnesyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-farnesyl-L-cysteine synthesis from peptidyl-cysteine|peptidyl-S-farnesyl-L-cysteine anabolism from peptidyl-cysteine RESID:AA0102 biological_process owl:Class GO:0018343 biolink:NamedThing protein farnesylation The covalent attachment of a farnesyl group to a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein farnesylation|protein amino acid farnesylation GO:0018347 biological_process owl:Class GO:0004314 biolink:NamedThing [acyl-carrier-protein] S-malonyltransferase activity Catalysis of the reaction: malonyl-CoA + [acyl-carrier protein] = CoA + malonyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MCAT activity|malonyl coenzyme A-acyl carrier protein transacylase activity|FabD|malonyl transacylase activity|malonyl-CoA-acyl carrier protein transacylase activity|malonyl-CoA:acyl-carrier-protein S-malonyltransferase activity|malonyl-CoA:AcpM transacylase activity|acyl carrier proteinmalonyltransferase activity|malonyl-CoA:acyl carrier protein transacylase activity|malonyl transferase activity|malonyl-CoA:ACP transacylase activity|[acyl-carrier protein] S-malonyltransferase activity|acyl-carrier-protein S-malonyltransferase activity|ACP S-malonyltransferase activity|acyl carrier protein malonyltransferase activity|MAT MetaCyc:MALONYL-COA-ACP-TRANSACYL-RXN|EC:2.3.1.39|Reactome:R-HSA-8933547 molecular_function owl:Class GO:0004312 biolink:NamedThing fatty acid synthase activity Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADPH + 2n H+ = long-chain fatty acid + n+1 CoA + n CO2 + 2n NADP+. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing and thioester-hydrolysing)|fatty-acid synthase activity Reactome:R-HSA-75872|RHEA:14993|MetaCyc:FATTY-ACID-SYNTHASE-RXN|EC:2.3.1.85 molecular_function owl:Class GO:0033703 biolink:NamedThing 3beta-hydroxy-5beta-steroid dehydrogenase activity Catalysis of the reaction: 3beta-hydroxy-5beta-pregnane-20-one + NADP(+) = 5beta-pregnan-3,20-dione + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3beta-hydroxysteroid 5beta-oxidoreductase activity|3beta-hydroxysteroid 5beta-progesterone oxidoreductase activity|3beta-hydroxy-5beta-steroid:NADP+ 3-oxidoreductase activity RHEA:22944|KEGG_REACTION:R06166|EC:1.1.1.277|MetaCyc:1.1.1.277-RXN molecular_function owl:Class GO:2000264 biolink:NamedThing negative regulation of blood coagulation, extrinsic pathway Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation, extrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:44:42Z biological_process owl:Class GO:0030195 biolink:NamedThing negative regulation of blood coagulation Any process that stops, prevents, or reduces the frequency, rate or extent of blood coagulation. tmpzr1t_l9r_go_relaxed.owl downregulation of blood coagulation|inhibition of blood coagulation|down-regulation of blood coagulation|down regulation of blood coagulation biological_process owl:Class GO:0090514 biolink:NamedThing L-tyrosine transmembrane import into vacuole The directed movement of L-tyrosine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-14T11:25:52Z biological_process owl:Class GO:1900097 biolink:NamedThing positive regulation of dosage compensation by inactivation of X chromosome Any process that activates or increases the frequency, rate or extent of dosage compensation, by inactivation of X chromosome. tmpzr1t_l9r_go_relaxed.owl up-regulation of Barr body formation|up-regulation of dosage compensation, by inactivation of X chromosome|upregulation of Barr body formation|positive regulation of X chromosome inactivation|up-regulation of chromosome inactivation|activation of X chromosome inactivation|up regulation of dosage compensation, by inactivation of X chromosome|activation of chromosome inactivation|activation of Barr body formation|up regulation of Barr body formation|up regulation of chromosome inactivation|positive regulation of chromosome inactivation|upregulation of dosage compensation, by inactivation of X chromosome|up-regulation of X chromosome inactivation|positive regulation of Barr body formation|up regulation of X chromosome inactivation|upregulation of X chromosome inactivation|activation of dosage compensation, by inactivation of X chromosome|upregulation of chromosome inactivation hjd 2012-02-14T07:29:52Z biological_process owl:Class GO:2000317 biolink:NamedThing negative regulation of T-helper 17 type immune response Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 type immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of Th17 immune response mah 2011-01-18T01:33:00Z biological_process owl:Class GO:0002823 biolink:NamedThing negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains Any process that stops, prevents, or reduces the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002196 biolink:NamedThing Ser-tRNA(Ala) hydrolase activity Catalysis of the hydrolysis of misacylated Ser-tRNA(Ala). tmpzr1t_l9r_go_relaxed.owl hjd 2011-09-30T02:18:50Z molecular_function owl:Class GO:0002161 biolink:NamedThing aminoacyl-tRNA editing activity The hydrolysis of an incorrectly aminoacylated tRNA. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA hydrolysis activity|amino acid proofreading activity hjd 2010-02-12T03:06:56Z molecular_function owl:Class GO:1900826 biolink:NamedThing negative regulation of membrane depolarization during cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of membrane depolarization during a cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl downregulation of membrane depolarization during cardiac muscle cell action potential|inhibition of membrane depolarization during cardiac muscle cell action potential|down-regulation of membrane depolarization during of cardiac muscle cell action potential|down regulation of membrane depolarization during cardiac muscle cell action potential rl 2012-06-06T04:15:40Z biological_process owl:Class GO:1901155 biolink:NamedThing paromomycin biosynthetic process The chemical reactions and pathways resulting in the formation of paromomycin. tmpzr1t_l9r_go_relaxed.owl paromomycin synthesis|paromomycin biosynthesis|paromomycin formation|paromomycin anabolism yaf 2012-07-17T04:27:51Z biological_process owl:Class GO:0030648 biolink:NamedThing aminoglycoside antibiotic biosynthetic process The chemical reactions and pathways resulting in the formation of an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin. tmpzr1t_l9r_go_relaxed.owl aminoglycoside antibiotic formation|aminoglycoside antibiotic anabolism|aminoglycoside antibiotic synthesis|aminoglycoside antibiotic biosynthesis biological_process owl:Class GO:0046459 biolink:NamedThing short-chain fatty acid metabolic process The chemical reactions and pathways involving fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short-chain fatty acid metabolism biological_process owl:Class GO:1902339 biolink:NamedThing positive regulation of apoptotic process involved in morphogenesis Any process that activates or increases the frequency, rate or extent of apoptotic process involved in morphogenesis. tmpzr1t_l9r_go_relaxed.owl activation of apoptosis involved in development|activation of apoptosis involved in morphogenesis|up regulation of apoptosis involved in morphogenesis|upregulation of morphogenetic apoptosis|up-regulation of morphogenetic apoptosis|upregulation of apoptotic process involved in morphogenesis|positive regulation of apoptosis involved in development|up regulation of morphogenetic apoptosis|up-regulation of apoptosis involved in morphogenesis|upregulation of apoptosis involved in morphogenesis|positive regulation of morphogenetic apoptosis|up regulation of apoptotic process involved in morphogenesis|activation of apoptotic process involved in morphogenesis|up-regulation of apoptotic process involved in morphogenesis|activation of morphogenetic apoptosis|upregulation of apoptosis involved in development|up regulation of apoptosis involved in development|up-regulation of apoptosis involved in development|positive regulation of apoptosis involved in morphogenesis sart 2013-07-29T15:03:33Z biological_process owl:Class GO:0034628 biolink:NamedThing 'de novo' NAD biosynthetic process from aspartate The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl de novo NAD biosynthetic process from aspartate biological_process owl:Class GO:0034627 biolink:NamedThing 'de novo' NAD biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of tryptophan or aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl de novo NAD biosynthetic process biological_process owl:Class GO:0002664 biolink:NamedThing regulation of T cell tolerance induction Any process that modulates the frequency, rate, or extent of T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte tolerance induction|regulation of T-cell tolerance induction|regulation of T-lymphocyte tolerance induction biological_process owl:Class GO:0002643 biolink:NamedThing regulation of tolerance induction Any process that modulates the frequency, rate, or extent of tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904268 biolink:NamedThing positive regulation of Schwann cell chemotaxis Any process that activates or increases the frequency, rate or extent of Schwann cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl upregulation of Schwann cell chemotaxis|up regulation of Schwann cell chemotaxis|activation of Schwann cell chemotaxis|up-regulation of Schwann cell chemotaxis sl 2015-05-28T17:47:55Z biological_process owl:Class GO:0002559 biolink:NamedThing type I hypersensitivity mediated by basophils An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors basophils, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002560 biolink:NamedThing basophil mediated immunity Any process involved in the carrying out of an immune response by a basophil. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014054 biolink:NamedThing positive regulation of gamma-aminobutyric acid secretion Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid. tmpzr1t_l9r_go_relaxed.owl activation of gamma-aminobutyric acid secretion|upregulation of gamma-aminobutyric acid secretion|up regulation of gamma-aminobutyric acid secretion|up-regulation of gamma-aminobutyric acid secretion|positive regulation of GABA secretion|stimulation of gamma-aminobutyric acid secretion biological_process owl:Class GO:0015233 biolink:NamedThing pantothenate transmembrane transporter activity Enables the directed movement of pantothenate across a membrane. Pantothenate is the anion of pantothenic acid, the amide of beta-alanine and pantoic acid; it is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. tmpzr1t_l9r_go_relaxed.owl vitamin B5 transmembrane transporter activity|pantothenate transporter activity molecular_function owl:Class GO:0061001 biolink:NamedThing regulation of dendritic spine morphogenesis Any process that modulates the rate, frequency, or extent of dendritic spine morphogenesis, the process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:31:52Z biological_process owl:Class GO:0102771 biolink:NamedThing sphingolipid very long chain fatty acid alpha-hydroxylase activity Catalysis of the reaction: O2 + NADPH + H+ + a dihydroceramide = NADP + H2O + an alpha hydroxydihydroceramide. tmpzr1t_l9r_go_relaxed.owl RHEA:46512|MetaCyc:RXN-7796 molecular_function owl:Class GO:0106317 biolink:NamedThing methane monooxygenase NADH activity Catalysis of the reaction: methane + NADH + H+ + O2 = methanol + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.25|RHEA:13637 hjd 2020-09-23T15:12:25Z molecular_function owl:Class GO:0015049 biolink:NamedThing methane monooxygenase activity Catalysis of the reaction: methane + NAD(P)H + H+ + O2 = methanol + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl methane,NAD(P)H:oxygen oxidoreductase (hydroxylating)|methane hydroxylase activity EC:1.14.13.25|KEGG_REACTION:R01142|UM-BBD_enzymeID:e0007|MetaCyc:METHANE-MONOOXYGENASE-RXN|KEGG_REACTION:R01143 molecular_function owl:Class GO:0009215 biolink:NamedThing purine deoxyribonucleoside triphosphate metabolic process The chemical reactions and pathways involving purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside triphosphate metabolism biological_process owl:Class GO:0009192 biolink:NamedThing deoxyribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside diphosphate degradation|deoxyribonucleoside diphosphate breakdown|deoxyribonucleoside diphosphate catabolism biological_process owl:Class GO:0048572 biolink:NamedThing short-day photoperiodism Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length. tmpzr1t_l9r_go_relaxed.owl response to short-day photoperiod|response to short-day|long-night photoperiodism|response to long-night biological_process owl:Class GO:0009648 biolink:NamedThing photoperiodism Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species. tmpzr1t_l9r_go_relaxed.owl response to night length|response to day length|response to photoperiod Wikipedia:Photoperiodism biological_process owl:Class GO:0102028 biolink:NamedThing cystathionine gamma-synthase activity (acts on O-phosphohomoserine) Catalysis of the reaction: L-cysteine + O-phosphonato-L-homoserine = L-cystathionine + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:CYSPH-RXN|EC:2.5.1.48 molecular_function owl:Class GO:1905274 biolink:NamedThing regulation of modification of postsynaptic actin cytoskeleton Any process that modulates the frequency, rate or extent of modification of postsynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic actin cytoskeleton remodelling dos 2016-06-16T22:34:25Z biological_process owl:Class GO:0099159 biolink:NamedThing regulation of modification of postsynaptic structure Any process that modulates the frequency, rate or extent of modification of postsynaptic structure. tmpzr1t_l9r_go_relaxed.owl regulation of postsynapse remodelling dos 2017-08-25T15:47:55Z biological_process owl:Class GO:1900053 biolink:NamedThing negative regulation of retinoic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of retinoic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of retinoic acid biosynthetic process|down-regulation of retinoic acid anabolic process|down regulation of retinoic acid anabolic process|inhibition of retinoic acid anabolic process|negative regulation of retinoic acid anabolic process|down-regulation of retinoic acid biosynthetic process|down regulation of retinoic acid biosynthetic process|inhibition of retinoic acid biosynthetic process|downregulation of retinoic acid anabolic process yaf 2012-01-20T09:55:49Z biological_process owl:Class GO:0140706 biolink:NamedThing protein-containing complex localization to centriolar satellite A protein-containing complex localization by which the complex is transported to, or maintained in, the centriolar satellite. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22020 pg 2021-09-01T05:59:13Z biological_process owl:Class GO:1900902 biolink:NamedThing regulation of hexadecanal biosynthetic process Any process that modulates the frequency, rate or extent of hexadecanal biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of hexadecanal anabolism|regulation of palmitaldehyde biosynthesis|regulation of hexadecanal formation|regulation of hexadecanal biosynthesis|regulation of palmitaldehyde biosynthetic process|regulation of hexadecanal synthesis tt 2012-06-13T03:33:10Z biological_process owl:Class GO:1900905 biolink:NamedThing regulation of hexadecanal metabolic process Any process that modulates the frequency, rate or extent of hexadecanal metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of hexadecanal metabolism tt 2012-06-13T03:35:27Z biological_process owl:Class GO:0018161 biolink:NamedThing dipyrrin biosynthetic process The chemical reactions and pathways resulting in the formation of dipyrrins (pyrromethanes), compounds containing two pyrrole rings linked through a methine, -CH=, group. tmpzr1t_l9r_go_relaxed.owl dipyrrin anabolism|dipyrrin synthesis|dipyrromethane biosynthetic process|dipyrrin formation|dipyrrin biosynthesis|dipyrromethane biosynthesis biological_process owl:Class GO:0140587 biolink:NamedThing chromatin loop anchoring activity Bridging together two DNA loop anchors together, maintaining a chromatin loop. tmpzr1t_l9r_go_relaxed.owl chromosomal loop binding|DNA loop binding https://github.com/geneontology/go-ontology/issues/20204 pg 2021-02-04T14:53:13Z molecular_function owl:Class GO:0106260 biolink:NamedThing DNA-DNA tethering activity Bridging together two regions of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl dsDNA bridging|double-stranded DNA bridging https://github.com/geneontology/go-ontology/issues/20503|https://github.com/geneontology/go-ontology/issues/19385 hjd 2020-05-07T19:53:35Z GO:0140564 molecular_function owl:Class GO:0019323 biolink:NamedThing pentose catabolic process The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentose degradation|pentose catabolism|pentose breakdown biological_process owl:Class GO:0046365 biolink:NamedThing monosaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. tmpzr1t_l9r_go_relaxed.owl monosaccharide catabolism|monosaccharide breakdown|monosaccharide degradation biological_process owl:Class GO:1900772 biolink:NamedThing fumitremorgin B biosynthetic process The chemical reactions and pathways resulting in the formation of fumitremorgin B. tmpzr1t_l9r_go_relaxed.owl fumitremorgin B anabolism|Lanosulin biosynthetic process|Lanosulin biosynthesis|fumitremorgin B biosynthesis|Lanosulin formation|Lanosulin anabolism|fumitremorgin B formation|Lanosulin synthesis|fumitremorgin B synthesis di 2012-06-04T09:25:50Z biological_process owl:Class GO:0005371 biolink:NamedThing tricarboxylate secondary active transmembrane transporter activity Enables the transfer of tricarboxylate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl tricarboxylate carrier activity GO:0005370 molecular_function owl:Class GO:2000254 biolink:NamedThing regulation of male germ cell proliferation Any process that modulates the frequency, rate or extent of male germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-18T09:29:44Z biological_process owl:Class GO:1990832 biolink:NamedThing slow axonal transport The directed slow movement of non-membranous molecules in nerve cell axons. It is comprised of a Slow Component a (SCa) and a Slow Component b (SCb) which differ in transport rates and protein composition. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-21T17:27:32Z biological_process owl:Class GO:0060172 biolink:NamedThing astral microtubule depolymerization The removal of tubulin heterodimers from one or both ends of an astral microtubule. An astral microtubule is any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030953 biolink:NamedThing astral microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles. tmpzr1t_l9r_go_relaxed.owl astral microtubule organisation|astral microtubule organization and biogenesis biological_process owl:Class GO:1901960 biolink:NamedThing isobutanol metabolic process The chemical reactions and pathways involving isobutanol. tmpzr1t_l9r_go_relaxed.owl isobutanol metabolism tt 2013-02-19T21:49:44Z biological_process owl:Class GO:0086006 biolink:NamedThing voltage-gated sodium channel activity involved in cardiac muscle cell action potential Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of a cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:34:49Z molecular_function owl:Class GO:0005248 biolink:NamedThing voltage-gated sodium channel activity Enables the transmembrane transfer of a sodium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-dependent sodium channel activity|voltage-sensitive sodium channel|voltage-gated sodium ion channel activity|voltage gated sodium channel activity Reactome:R-HSA-5576895 molecular_function owl:Class GO:0000715 biolink:NamedThing nucleotide-excision repair, DNA damage recognition The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix. tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair, DNA damage recognition biological_process owl:Class GO:1901123 biolink:NamedThing bacitracin A catabolic process The chemical reactions and pathways resulting in the breakdown of bacitracin A. tmpzr1t_l9r_go_relaxed.owl bacitracin A catabolism|bacitracin A degradation|bacitracin A breakdown yaf 2012-07-11T03:16:20Z biological_process owl:Class GO:1901122 biolink:NamedThing bacitracin A metabolic process The chemical reactions and pathways involving bacitracin A. tmpzr1t_l9r_go_relaxed.owl bacitracin A metabolism yaf 2012-07-11T03:15:56Z biological_process owl:Class GO:0032250 biolink:NamedThing negative regulation of adenosine transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down regulation of adenosine transport|inhibition of adenosine transport|down-regulation of adenosine transport|downregulation of adenosine transport biological_process owl:Class GO:0035063 biolink:NamedThing nuclear speck organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. tmpzr1t_l9r_go_relaxed.owl nuclear speck organisation|nuclear speckle assembly|nuclear speckle organization|nuclear speck organization and biogenesis See also the cellular component term 'nuclear speck ; GO:0016607'. biological_process owl:Class GO:0030575 biolink:NamedThing nuclear body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. tmpzr1t_l9r_go_relaxed.owl nuclear body organization and biogenesis|nuclear body organisation biological_process owl:Class GO:0001920 biolink:NamedThing negative regulation of receptor recycling Any process that stops, prevents, or reduces the rate of receptor recycling. tmpzr1t_l9r_go_relaxed.owl inhibition of receptor recycling|down-regulation of receptor recycling|down regulation of receptor recycling|downregulation of receptor recycling biological_process owl:Class GO:0004877 biolink:NamedThing complement component C3b receptor activity Combining with the C3b product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001847 biolink:NamedThing opsonin receptor activity Combining with an opsonin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043368 biolink:NamedThing positive T cell selection The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death. tmpzr1t_l9r_go_relaxed.owl positive T lymphocyte selection|positive T-lymphocyte selection|positive T-cell selection biological_process owl:Class GO:0103000 biolink:NamedThing UDP-glucose:4-hydroxylamino-2,6-dinitrotoluene-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 4-hydroxylamino-2,6-dinitrotoluene <=> 4-hydroxylamino-2,6-dinitrotoluene-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9748 molecular_function owl:Class GO:0009123 biolink:NamedThing nucleoside monophosphate metabolic process The chemical reactions and pathways involving a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside monophosphate metabolism biological_process owl:Class GO:0010744 biolink:NamedThing positive regulation of macrophage derived foam cell differentiation Any process that increases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009414 biolink:NamedThing response to water deprivation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. tmpzr1t_l9r_go_relaxed.owl response to drought|drought tolerance|response to thirst|response to dehydration biological_process owl:Class GO:0014073 biolink:NamedThing response to tropane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tropane stimulus. Tropane is a nitrogenous bicyclic organic compound mainly known for a group of alkaloids derived from it (called tropane alkaloids), which include, among others, atropine and cocaine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019249 biolink:NamedThing lactate biosynthetic process The chemical reactions and pathways resulting in the formation of lactate, the anion of lactic acid. tmpzr1t_l9r_go_relaxed.owl lactate formation|lactate biosynthesis|lactate synthesis|lactate anabolism biological_process owl:Class GO:0051427 biolink:NamedThing hormone receptor binding Binding to a receptor for a hormone. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051518 biolink:NamedThing positive regulation of bipolar cell growth Any process that activates or increases the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of bipolar cell growth|up-regulation of bipolar cell growth|upregulation of bipolar cell growth|up regulation of bipolar cell growth biological_process owl:Class GO:0110003 biolink:NamedThing regulation of tRNA C5-cytosine methylation Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving tRNA C5-cytosine methylation. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0110002 biolink:NamedThing regulation of tRNA methylation Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving tRNA methylation. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0018019 biolink:NamedThing N-terminal peptidyl-glutamine methylation The methylation of a glutamine residue in proteins to form the peptidyl-N5-methyl-L-glutamine derivative. tmpzr1t_l9r_go_relaxed.owl RESID:AA0071 biological_process owl:Class GO:0018199 biolink:NamedThing peptidyl-glutamine modification The modification of peptidyl-glutamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032763 biolink:NamedThing regulation of mast cell cytokine production Any process that modulates the frequency, rate, or extent of mast cell cytokine production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000427 biolink:NamedThing plastid-encoded plastid RNA polymerase complex An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000428 biolink:NamedThing DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000050 biolink:NamedThing regulation of non-canonical Wnt signaling pathway Any process that modulates the frequency, rate or extent of non-canonical Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of non-canonical Wnt-activated signaling pathway|regulation of non-canonical Wnt receptor signaling pathway|regulation of beta-catenin-independent Wnt receptor signaling pathway|regulation of non-canonical Wnt receptor signalling pathway jl 2010-08-20T01:04:12Z biological_process owl:Class GO:0030111 biolink:NamedThing regulation of Wnt signaling pathway Any process that modulates the frequency, rate or extent of the activity of the Wnt signal transduction pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt receptor signaling pathway|regulation of frizzled signalling pathway|regulation of frizzled signaling pathway|regulation of Wnt-activated signaling pathway|regulation of Wnt receptor signalling pathway GO:0008590 biological_process owl:Class GO:0036003 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to stress Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl bf 2011-09-19T03:00:18Z biological_process owl:Class GO:0033027 biolink:NamedThing positive regulation of mast cell apoptotic process Any process that activates or increases the frequency, rate, or extent of mast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of mast cell apoptosis|up-regulation of mast cell apoptosis|up regulation of mast cell apoptosis|activation of mast cell apoptosis|stimulation of mast cell apoptosis|positive regulation of mast cell apoptosis biological_process owl:Class GO:0097331 biolink:NamedThing response to cytarabine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytarabine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:55:29Z biological_process owl:Class GO:0000824 biolink:NamedThing inositol tetrakisphosphate 3-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol 1,4,5,6-tetrakisphosphate = ADP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol 1,4,5,6-tetrakisphosphate 3-kinase activity|inositol polyphosphate multikinase activity|EC:2.7.1.151|IpmK|1D-myo-inositol-tetrakisphosphate 3-kinase activity Reactome:R-HSA-1855185|RHEA:11856 molecular_function owl:Class GO:0051765 biolink:NamedThing inositol tetrakisphosphate kinase activity Catalysis of the reaction: inositol tetrakisphosphate + ATP = inositol pentakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0039015 biolink:NamedThing cell proliferation involved in pronephros development The multiplication or reproduction of cells, resulting in the expansion of the population in the pronephros. tmpzr1t_l9r_go_relaxed.owl cell proliferation involved in pronephric kidney development bf 2010-07-02T10:01:49Z biological_process owl:Class GO:1904393 biolink:NamedThing regulation of skeletal muscle acetylcholine-gated channel clustering Any process that modulates the frequency, rate or extent of skeletal muscle acetylcholine-gated channel clustering. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal muscle nicotinic acetylcholine receptor clustering|regulation of skeletal muscle AChR clustering sl 2015-06-23T19:23:25Z biological_process owl:Class GO:1903909 biolink:NamedThing regulation of receptor clustering Any process that modulates the frequency, rate or extent of receptor clustering. tmpzr1t_l9r_go_relaxed.owl als 2015-02-09T10:56:33Z biological_process owl:Class GO:0032755 biolink:NamedThing positive regulation of interleukin-6 production Any process that activates or increases the frequency, rate, or extent of interleukin-6 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-6 production|up regulation of interleukin-6 production|positive regulation of interleukin-6 biosynthetic process|positive regulation of interleukin-6 secretion|upregulation of interleukin-6 production|positive regulation of IL-6 production|up-regulation of interleukin-6 production|activation of interleukin-6 production GO:0045410|GO:2000778 biological_process owl:Class GO:0010727 biolink:NamedThing negative regulation of hydrogen peroxide metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl negative regulation of hydrogen peroxide metabolism biological_process owl:Class GO:2000378 biolink:NamedThing negative regulation of reactive oxygen species metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of reactive oxygen species metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of reactive oxygen species metabolism|negative regulation of ROS metabolic process mah 2011-02-11T02:06:49Z biological_process owl:Class GO:0002228 biolink:NamedThing natural killer cell mediated immunity The promotion of an immune response by natural killer cells through direct recognition of target cells or through the release of cytokines. tmpzr1t_l9r_go_relaxed.owl NK cell mediated immunity biological_process owl:Class GO:0035645 biolink:NamedThing enteric smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell of the intestine. tmpzr1t_l9r_go_relaxed.owl intestinal smooth muscle cell differentiation bf 2011-01-21T02:58:58Z biological_process owl:Class GO:0051145 biolink:NamedThing smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary. tmpzr1t_l9r_go_relaxed.owl nonstriated muscle cell differentiation biological_process owl:Class GO:0048316 biolink:NamedThing seed development The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046607 biolink:NamedThing positive regulation of centrosome cycle Any process that activates or increases the frequency, rate or extent of the centrosome cycle. tmpzr1t_l9r_go_relaxed.owl up-regulation of centrosome cycle|upregulation of centrosome cycle|up regulation of centrosome cycle|activation of centrosome cycle|stimulation of centrosome cycle biological_process owl:Class GO:0070089 biolink:NamedThing chloride-activated potassium channel activity Enables the chloride concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005267 biolink:NamedThing potassium channel activity Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1299297|Reactome:R-HSA-1299359|Reactome:R-HSA-5578910|Reactome:R-HSA-1296037|Reactome:R-HSA-1299304|Reactome:R-HSA-1296024|Reactome:R-HSA-1299318|Reactome:R-HSA-1296039|Reactome:R-HSA-1299338|Reactome:R-HSA-1296035|Reactome:R-HSA-1296348|Reactome:R-HSA-2534365 molecular_function owl:Class GO:1900928 biolink:NamedThing positive regulation of L-threonine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-threonine import into cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of L-threonine import|positive regulation of L-threonine uptake|up-regulation of L-threonine import|up regulation of L-threonine uptake|upregulation of L-threonine import|up regulation of L-threonine import|activation of L-threonine import|upregulation of L-threonine uptake|activation of L-threonine uptake|up-regulation of L-threonine uptake al 2012-06-13T07:42:00Z biological_process owl:Class GO:1900926 biolink:NamedThing regulation of L-threonine import across plasma membrane Any process that modulates the frequency, rate or extent of L-threonine import into cell. tmpzr1t_l9r_go_relaxed.owl regulation of L-threonine uptake|regulation of L-threonine import al 2012-06-13T07:41:32Z biological_process owl:Class GO:0050778 biolink:NamedThing positive regulation of immune response Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. tmpzr1t_l9r_go_relaxed.owl stimulation of immune response|up regulation of immune response|upregulation of immune response|up-regulation of immune response biological_process owl:Class GO:0060692 biolink:NamedThing mesenchymal cell differentiation involved in salivary gland development The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell of the salivary gland. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T01:08:44Z biological_process owl:Class GO:0060689 biolink:NamedThing cell differentiation involved in salivary gland development The process in which a relatively unspecialized cell acquires specialized structural and/or functional features that characterize the cells of the salivary gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T01:01:35Z biological_process owl:Class GO:0072007 biolink:NamedThing mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesangial cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T01:59:09Z biological_process owl:Class GO:0072153 biolink:NamedThing renal interstitial fibroblast fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a renal fibroblast. tmpzr1t_l9r_go_relaxed.owl kidney interstitial cell fate commitment mah 2010-02-24T02:16:53Z biological_process owl:Class GO:0102283 biolink:NamedThing 3-ketodihydrosphinganine (C20) reductase activity Catalysis of the reaction: C20 sphinganine(1+) + NADP <=> C20 3-dehydrosphinganine(1+) + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12642 molecular_function owl:Class GO:1905152 biolink:NamedThing positive regulation of voltage-gated sodium channel activity Any process that activates or increases the frequency, rate or extent of voltage-gated sodium channel activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of voltage-dependent sodium channel activity|upregulation of voltage-dependent sodium channel activity|upregulation of voltage gated sodium channel activity|activation of voltage-gated sodium channel activity|activation of voltage gated sodium channel activity|positive regulation of voltage gated sodium channel activity|activation of voltage-gated sodium ion channel activity|positive regulation of voltage-dependent sodium channel activity|activation of voltage-sensitive sodium channel|up regulation of voltage-gated sodium channel activity|up regulation of voltage-sensitive sodium channel|up-regulation of voltage-gated sodium ion channel activity|upregulation of voltage-gated sodium channel activity|upregulation of voltage-sensitive sodium channel|up regulation of voltage-gated sodium ion channel activity|up regulation of voltage gated sodium channel activity|positive regulation of voltage-gated sodium ion channel activity|activation of voltage-dependent sodium channel activity|up-regulation of voltage gated sodium channel activity|up-regulation of voltage-sensitive sodium channel|up regulation of voltage-dependent sodium channel activity|upregulation of voltage-gated sodium ion channel activity|positive regulation of voltage-sensitive sodium channel|up-regulation of voltage-gated sodium channel activity sl 2016-04-15T21:47:57Z biological_process owl:Class GO:2000651 biolink:NamedThing positive regulation of sodium ion transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of sodium transporter activity yaf 2011-04-28T08:43:00Z biological_process owl:Class GO:0072744 biolink:NamedThing cellular response to trichodermin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichodermin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:29:38Z biological_process owl:Class GO:0071362 biolink:NamedThing cellular response to ether Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ether stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:03:22Z biological_process owl:Class GO:0051575 biolink:NamedThing 5'-deoxyribose-5-phosphate lyase activity Catalysis of the beta-elimination of the 5' deoxyribose-5-phosphate at an abasic site in DNA where a DNA-(apurinic or apyrimidinic site) lyase has already cleaved the C-O-P bond 3' to the apurinic or apyrimidinic site. tmpzr1t_l9r_go_relaxed.owl dRP lyase activity|5'-deoxyribose phosphate activity|dRPase activity molecular_function owl:Class GO:0070623 biolink:NamedThing regulation of thiamine biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine. tmpzr1t_l9r_go_relaxed.owl regulation of thiamine biosynthesis|regulation of thiamine anabolism|regulation of thiamine synthesis|regulation of thiamine formation|regulation of thiamin biosynthetic process mah 2009-05-01T03:15:49Z biological_process owl:Class GO:0042942 biolink:NamedThing D-serine transport The directed movement of D-serine, the D-enantiomer of 2-amino-3-hydroxypropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042940 biolink:NamedThing D-amino acid transport The directed movement of the D-enantiomer of an amino acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903314 biolink:NamedThing regulation of nitrogen cycle metabolic process Any process that modulates the frequency, rate or extent of nitrogen cycle metabolic process. tmpzr1t_l9r_go_relaxed.owl vw 2014-08-18T12:57:34Z biological_process owl:Class GO:0034129 biolink:NamedThing positive regulation of MyD88-independent toll-like receptor signaling pathway Any process that activates or increases the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of MyD88-independent toll-like receptor signalling pathway|positive regulation of MyD88-independent TLR signaling pathway|positive regulation of MyD88-independent toll-like receptor biological_process owl:Class GO:0030762 biolink:NamedThing tetrahydrocolumbamine 2-O-methyltransferase activity Catalysis of the reaction: (S)-tetrahydrocolumbamine + S-adenosyl-L-methionine(1+) = S-adenosyl-L-homocysteine + H(+) + tetrahydropalmatine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:5,8,13,13a-tetrahydrocolumbamine 2-O-methyltransferase activity|tetrahydrocolumbamine methyltransferase activity EC:2.1.1.89|KEGG_REACTION:R04077|MetaCyc:2.1.1.89-RXN|RHEA:22536 molecular_function owl:Class GO:0030062 biolink:NamedThing mitochondrial tricarboxylic acid cycle enzyme complex Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle. tmpzr1t_l9r_go_relaxed.owl TCA cycle enzyme complex cellular_component owl:Class GO:0045239 biolink:NamedThing tricarboxylic acid cycle enzyme complex Any of the heteromeric enzymes that act in the TCA cycle. tmpzr1t_l9r_go_relaxed.owl TCA cycle enzyme complex cellular_component owl:Class GO:0015116 biolink:NamedThing sulfate transmembrane transporter activity Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl sulfate permease activity|sulphate transporter activity RHEA:34983|Reactome:R-HSA-3560789|Reactome:R-HSA-427555|Reactome:R-HSA-8875871 molecular_function owl:Class GO:0044018 biolink:NamedThing histone acetyltransferase activity (H3-K36 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 36) = CoA + histone H3 N6-acetyl-L-lysine (position 36). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K36 specific) molecular_function owl:Class GO:0010484 biolink:NamedThing H3 histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone H3 = CoA + acetyl-histone H3. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046597 biolink:NamedThing negative regulation of viral entry into host cell Any process that stops, prevents, or reduces the frequency, rate or extent of the entry of viral entry into a host cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of viral penetration into host cell biological_process owl:Class GO:1901059 biolink:NamedThing p-hydroxyphenyl lignin catabolic process The chemical reactions and pathways resulting in the breakdown of p-hydroxyphenyl lignin. tmpzr1t_l9r_go_relaxed.owl p-hydroxyphenyl lignin catabolism|p-hydroxyphenyl lignin breakdown|H-lignin catabolic process|p-hydroxyphenyl lignin degradation tt 2012-06-29T12:32:17Z biological_process owl:Class GO:0033245 biolink:NamedThing negative regulation of penicillin metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl negative regulation of penicillin metabolism biological_process owl:Class GO:0002578 biolink:NamedThing negative regulation of antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl down regulation of antigen processing and presentation|down-regulation of antigen processing and presentation|downregulation of antigen processing and presentation|inhibition of antigen processing and presentation biological_process owl:Class GO:0001760 biolink:NamedThing aminocarboxymuconate-semialdehyde decarboxylase activity Catalysis of the reaction: 2-amino-3-carboxymuconate 6-semialdehyde + H(+) = 2-aminomuconate 6-semialdehyde + CO(2). tmpzr1t_l9r_go_relaxed.owl alpha-amino-beta-carboxymuconate-epsilon-semialdehyde beta-decarboxylase activity|picolinic acid carboxylase activity|alpha-amino-beta-carboxymuconate-epsilon-semialdehade decarboxylase activity|picolinic acid decarboxylase activity|2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase (2-aminomuconate-semialdehyde-forming)|2-amino-3-(3-oxoprop-2-enyl)but-2-enedioate carboxy-lyase activity|2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase activity|ACMSD activity MetaCyc:AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN|EC:4.1.1.45|KEGG_REACTION:R04323|RHEA:16557 molecular_function owl:Class GO:1901962 biolink:NamedThing S-adenosyl-L-methionine transmembrane transport The directed movement of S-adenosyl-L-methionine across a membrane. tmpzr1t_l9r_go_relaxed.owl SAM transmembrane transport|S-adenosylmethionine transmembrane transport jl 2013-02-20T14:45:08Z biological_process owl:Class GO:0015805 biolink:NamedThing S-adenosyl-L-methionine transport The directed movement of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl SAM transport|S-adenosylmethionine transport|S-adenosyl methionine transport biological_process owl:Class GO:0051320 biolink:NamedThing S phase The cell cycle phase, following G1, during which DNA synthesis takes place. tmpzr1t_l9r_go_relaxed.owl S-phase Wikipedia:S_phase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1902215 biolink:NamedThing negative regulation of interleukin-4-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-4-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of interleukin-4-mediated signalling pathway|downregulation of interleukin-4-mediated signaling pathway|down regulation of interleukin-4-mediated signalling pathway|negative regulation of IL-4-mediated signaling pathway|inhibition of IL-4-mediated signaling pathway|down-regulation of interleukin-4-mediated signalling pathway|negative regulation of interleukin-4-mediated signalling pathway|down regulation of interleukin-4-mediated signaling pathway|inhibition of interleukin-4-mediated signalling pathway|inhibition of interleukin-4-mediated signaling pathway|down-regulation of IL-4-mediated signaling pathway|down-regulation of interleukin-4-mediated signaling pathway|down regulation of IL-4-mediated signaling pathway|downregulation of IL-4-mediated signaling pathway lb 2013-06-12T12:53:14Z biological_process owl:Class GO:0014049 biolink:NamedThing positive regulation of glutamate secretion Any process that activates or increases the frequency, rate or extent of the controlled release of glutamate. tmpzr1t_l9r_go_relaxed.owl up regulation of glutamate secretion|upregulation of glutamate secretion|activation of glutamate secretion|stimulation of glutamate secretion|up-regulation of glutamate secretion biological_process owl:Class GO:0050493 biolink:NamedThing GPI anchor biosynthetic process via N-threonyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-threonyl ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a threonyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor synthesis via N-threonyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-threonyl-glycosylphosphatidylinositolethanolamine|GPI anchor formation via N-threonyl-glycosylphosphatidylinositolethanolamine RESID:AA0164 biological_process owl:Class GO:0006506 biolink:NamedThing GPI anchor biosynthetic process The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. tmpzr1t_l9r_go_relaxed.owl glycosylphosphatidylinositol biosynthetic process|GPI anchor synthesis|GPI anchor formation|GPI anchor anabolism|GPI anchor biosynthesis|glycosylphosphatidylinositol biosynthesis|GPI/GSI anchor biosynthesis|GPI/GSI anchor biosynthetic process GO:0015998 biological_process owl:Class GO:0006534 biolink:NamedThing cysteine metabolic process The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. tmpzr1t_l9r_go_relaxed.owl cysteine metabolism Wikipedia:Cysteine_metabolism biological_process owl:Class GO:0048246 biolink:NamedThing macrophage chemotaxis The movement of a macrophage in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905517 biolink:NamedThing macrophage migration The orderly movement of a macrophage from one site to another. tmpzr1t_l9r_go_relaxed.owl sl 2016-09-30T22:17:45Z biological_process owl:Class GO:1990809 biolink:NamedThing endoplasmic reticulum tubular network membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network membrane. tmpzr1t_l9r_go_relaxed.owl vw 2015-07-22T16:42:36Z biological_process owl:Class GO:0090158 biolink:NamedThing endoplasmic reticulum membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an endoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum membrane organisation tb 2009-12-08T08:27:17Z biological_process owl:Class GO:2000626 biolink:NamedThing negative regulation of miRNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of miRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of microRNA catabolic process dph 2011-04-18T03:46:39Z biological_process owl:Class GO:0042263 biolink:NamedThing neuropeptide F receptor activity Combining with neuropeptide F and transmitting the signal within the cell to initiate a change in cell activity. Neuropeptide F is an arthropod peptide of more than 28 residues (typically 28-45) with a consensus C-terminal RxRFamide (commonly RPRFa, but also RVRFa. tmpzr1t_l9r_go_relaxed.owl NPF receptor activity Despite their naming, neuropeptide F (NPF) and short neuropeptide F (sNPF) are not closely related. molecular_function owl:Class GO:0002050 biolink:NamedThing pyoverdine catabolic process The chemical reactions and pathways resulting in the breakdown of the siderochrome pyoverdine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046215 biolink:NamedThing siderophore catabolic process The chemical reactions and pathways resulting in the breakdown of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action. tmpzr1t_l9r_go_relaxed.owl siderophore catabolism|siderophore degradation|siderophore breakdown|siderochrome catabolism biological_process owl:Class GO:0033129 biolink:NamedThing positive regulation of histone phosphorylation Any process that activates or increases the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033127 biolink:NamedThing regulation of histone phosphorylation Any process that modulates the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071238 biolink:NamedThing cellular response to brefeldin A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brefeldin A stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:25:52Z biological_process owl:Class GO:1900230 biolink:NamedThing positive regulation of single-species biofilm formation in or on host organism Any process that activates or increases the frequency, rate or extent of single-species biofilm formation in or on host organism. tmpzr1t_l9r_go_relaxed.owl activation of single-species biofilm formation in or on host organism|up regulation of single-species biofilm formation in or on host organism|upregulation of single-species biofilm formation in or on host organism|up-regulation of single-species biofilm formation in or on host organism di 2012-03-23T04:37:14Z biological_process owl:Class GO:0090230 biolink:NamedThing regulation of centromere complex assembly Any process that modulates the rate, frequency, or extent of centromere complex assembly, the aggregation, arrangement and bonding together of proteins and centromeric DNA molecules to form a centromeric protein-DNA complex. tmpzr1t_l9r_go_relaxed.owl centromere licensing tb 2010-01-20T10:20:49Z biological_process owl:Class GO:0017076 biolink:NamedThing purine nucleotide binding Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000039 biolink:NamedThing regulation of trichome morphogenesis Any process that modulates the frequency, rate or extent of trichome morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of trichome cell morphogenesis during differentiation tb 2010-08-05T11:36:31Z biological_process owl:Class GO:2000024 biolink:NamedThing regulation of leaf development Any process that modulates the frequency, rate or extent of leaf development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:25:14Z biological_process owl:Class GO:0038043 biolink:NamedThing interleukin-5-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-5 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-5-mediated signaling pathway|interleukin-5-mediated signalling pathway bf 2011-11-03T04:18:21Z biological_process owl:Class GO:0071524 biolink:NamedThing pyrrolysine biosynthetic process The chemical reactions and pathways resulting in the formation of pyrrolysine, N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine. tmpzr1t_l9r_go_relaxed.owl pyrrolysine synthesis|pyrrolysine biosynthesis|monomethylamine methyltransferase cofactor lysine adduct biosynthetic process|pyrrolysine anabolism|pyrrolysine formation mah 2010-01-07T02:40:24Z biological_process owl:Class GO:0051666 biolink:NamedThing actin cortical patch localization Any process in which actin cortical patches are transported to, or maintained in, a specific location. An actin cortical patch is a discrete actin-containing structure found just beneath the plasma membrane in fungal cells. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of actin cortical patch localization|actin cortical patch localisation biological_process owl:Class GO:0106290 biolink:NamedThing trans-cinnamate-CoA ligase activity Catalysis of the reaction: (E)-cinnamate + ATP + CoA = (E)-cinnamoyl-CoA + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:64788 hjd 2020-08-18T16:53:10Z molecular_function owl:Class GO:0060584 biolink:NamedThing regulation of prostaglandin-endoperoxide synthase activity Any process that modulates the rate, frequency or prostaglandin-endoperoxide synthase activity. Prostaglandin-endoperoxide synthase activity is the catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl regulation of prostaglandin synthetase activity|regulation of fatty acid cyclooxygenase activity|regulation of (PG)H synthase activity|regulation of PG synthetase activity dph 2009-05-08T02:08:37Z biological_process owl:Class GO:0006019 biolink:NamedThing deoxyribose 5-phosphate phosphorylation The process of introducing a phosphate group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016310 biolink:NamedThing phosphorylation The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phosphorylation biological_process owl:Class GO:0032035 biolink:NamedThing myosin II tail binding Binding to the tail region of a myosin II heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032038 biolink:NamedThing myosin II heavy chain binding Binding to a heavy chain of a myosin II complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0014887 biolink:NamedThing cardiac muscle adaptation The process in which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. tmpzr1t_l9r_go_relaxed.owl cardiac muscle plasticity biological_process owl:Class GO:0014888 biolink:NamedThing striated muscle adaptation Any process in which striated muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities. tmpzr1t_l9r_go_relaxed.owl striated muscle plasticity biological_process owl:Class GO:0062063 biolink:NamedThing BBSome binding Binding to a BBSome complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:59:18Z molecular_function owl:Class GO:0046508 biolink:NamedThing hydrolase activity, acting on carbon-sulfur bonds Catalysis of the hydrolysis of any carbon-sulfur bond, C-S. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on carbon-sulphur bonds EC:3.13.-.- molecular_function owl:Class GO:0006346 biolink:NamedThing DNA methylation-dependent heterochromatin assembly Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. tmpzr1t_l9r_go_relaxed.owl methylation-dependent heterochromatic silencing|methylation-dependent chromatin silencing https://github.com/geneontology/go-ontology/issues/22047 biological_process owl:Class GO:0031507 biolink:NamedThing heterochromatin assembly An epigenetic gene silencing mechanism that involves the assembly of chromatin into heterochromatin, resulting in a chromatin conformation refractory to transcription. This process starts with heterochromatin nucleation, its spreading, and ends with heterochromatin boundary formation. tmpzr1t_l9r_go_relaxed.owl chromatin silencing|heterochromatin formation involved in chromatin silencing|establishment of heterochromatin architecture|heterochromatin formation involved in chromatin silencing at centromere outer repeat region|heterochromatin assembly involved in chromatin silencing|heterochromatin formation|heterochromatin assembly involved in chromatin silencing at pericentric region|heterochromatic silencing|establishment of heterochromatic silencing|heterochromatin maintenance|transcriptional gene silencing|heterochromatin assembly involved in chromatin silencing at centromere outer repeat region|establishment of heterochromatin architecture involved in chromatin silencing at pericentric region|establishment of chromatin silencing|chromatin-mediated silencing|establishment of heterochromatin architecture involved in chromatin silencing at centromere outer repeat region|TGS|heterochromatin formation involved in chromatin silencing at pericentric region https://github.com/geneontology/go-ontology/issues/22030|https://github.com/geneontology/go-ontology/issues/19112|https://github.com/geneontology/go-ontology/issues/18954 GO:0006343|GO:0006342|GO:1904497|GO:0070869|GO:0016440 biological_process owl:Class GO:0071397 biolink:NamedThing cellular response to cholesterol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholesterol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:39:31Z biological_process owl:Class GO:1900909 biolink:NamedThing negative regulation of olefin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of olefin metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of olefin metabolism|down-regulation of olefin metabolism|down regulation of olefin metabolism|downregulation of olefin metabolism|downregulation of olefin metabolic process|down-regulation of olefin metabolic process|down regulation of olefin metabolic process|negative regulation of olefin metabolism|inhibition of olefin metabolic process tt 2012-06-13T04:18:50Z biological_process owl:Class GO:0019609 biolink:NamedThing 3-hydroxyphenylacetate metabolic process The chemical reactions and pathways involving 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate. tmpzr1t_l9r_go_relaxed.owl 3HPA metabolic process|3HPA metabolism|3-hydroxyphenylacetate metabolism biological_process owl:Class GO:0044396 biolink:NamedThing actin cortical patch organization A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane in cells, at sites of endocytosis. tmpzr1t_l9r_go_relaxed.owl actin cortical patch organisation jl 2011-12-21T03:33:25Z biological_process owl:Class GO:0030210 biolink:NamedThing heparin biosynthetic process The chemical reactions and pathways resulting in the formation of heparin, any member of a group of glycosaminoglycans of average Mr (6000-20000), consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. tmpzr1t_l9r_go_relaxed.owl heparin anabolism|heparin formation|heparan sulfate biosynthetic process|heparin synthesis|heparin biosynthesis biological_process owl:Class GO:0050159 biolink:NamedThing orsellinate decarboxylase activity Catalysis of the reaction: o-orsellinate + H(+) = CO(2) + orcinol. tmpzr1t_l9r_go_relaxed.owl orsellinate carboxy-lyase (orcinol-forming)|orsellinate carboxy-lyase activity KEGG_REACTION:R02831|EC:4.1.1.58|RHEA:16733|MetaCyc:ORSELLINATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0001804 biolink:NamedThing negative regulation of type III hypersensitivity Any process that stops, prevents, or reduces the rate of type III hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl downregulation of type III hypersensitivity|down-regulation of type III hypersensitivity|inhibition of type III hypersensitivity|down regulation of type III hypersensitivity biological_process owl:Class GO:0002887 biolink:NamedThing negative regulation of myeloid leukocyte mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid leukocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl down-regulation of myeloid leukocyte mediated immunity|downregulation of myeloid leukocyte mediated immunity|inhibition of myeloid leukocyte mediated immunity|down regulation of myeloid leukocyte mediated immunity biological_process owl:Class GO:0061003 biolink:NamedThing positive regulation of dendritic spine morphogenesis Any process that increases the rate, frequency, or extent of dendritic spine morphogenesis, the process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:36:54Z biological_process owl:Class GO:0050775 biolink:NamedThing positive regulation of dendrite morphogenesis Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of dendrite morphogenesis|stimulation of dendrite morphogenesis|activation of dendrite morphogenesis|up-regulation of dendrite morphogenesis|upregulation of dendrite morphogenesis biological_process owl:Class GO:1901247 biolink:NamedThing negative regulation of lung ciliated cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of lung ciliated cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of lung ciliated cell differentiation|inhibition of lung ciliated cell differentiation|down regulation of lung ciliated cell differentiation|down-regulation of lung ciliated cell differentiation vk 2012-08-08T08:58:58Z biological_process owl:Class GO:0019573 biolink:NamedThing D-arabinose catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of D-arabinose to form xylulose 5-phosphate. D-arabinose is converted into D-ribulose, which is phosphorylated to ribulose-5-phosphate, which is isomerized to give D-xylulose-5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-arabinose breakdown to xylulose 5-phosphate|D-arabinose degradation to xylulose 5-phosphate MetaCyc:DARABCAT-PWY biological_process owl:Class GO:0019571 biolink:NamedThing D-arabinose catabolic process The chemical reactions and pathways resulting in the breakdown of D-arabinose, the D-enantiomer of arabino-pentose. tmpzr1t_l9r_go_relaxed.owl D-arabinose degradation|D-arabinose catabolism|D-arabinose breakdown biological_process owl:Class GO:0018052 biolink:NamedThing C-terminal peptidyl-tyrosine amidation The formation of a C-terminal peptidyl-tyrosine amide by hydrolysis and oxidation of an interior Tyr-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0099 biological_process owl:Class GO:0030077 biolink:NamedThing plasma membrane light-harvesting complex A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. Examples of this complex are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030076 biolink:NamedThing light-harvesting complex A protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. tmpzr1t_l9r_go_relaxed.owl antenna complex Wikipedia:Light-harvesting_complex cellular_component owl:Class GO:0106365 biolink:NamedThing beta-carotene isomerase activity Catalyzes the reaction: all-trans-beta-carotene = 9-cis-beta-carotene. tmpzr1t_l9r_go_relaxed.owl EC:5.2.1.14|RHEA:34455 hjd 2021-02-16T15:32:24Z molecular_function owl:Class GO:1900844 biolink:NamedThing negative regulation of monodictyphenone biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of monodictyphenone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of monodictyphenone biosynthetic process|down regulation of monodictyphenone biosynthetic process|down-regulation of monodictyphenone biosynthetic process di 2012-06-07T09:41:00Z biological_process owl:Class GO:0043260 biolink:NamedThing laminin-11 complex A laminin complex composed of alpha5, beta2 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-521 complex cellular_component owl:Class GO:0043256 biolink:NamedThing laminin complex A large, extracellular glycoprotein complex composed of three different polypeptide chains, alpha, beta and gamma. Provides an integral part of the structural scaffolding of basement membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036512 biolink:NamedThing trimming of second mannose on A branch The removal of the second alpha-1,2-linked mannose from the A-chain of a glycoprotein oligosaccharide in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl conversion of (Man)8A(GlcNAc)2 to (Man)7AA(GlcNAc)2|glycoprotein mannose trimming on A branch|conversion of M8A to M7AA Consider also annotating to 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T14:16:40Z biological_process owl:Class GO:1904380 biolink:NamedThing endoplasmic reticulum mannose trimming Any protein alpha-1,2-demannosylation that takes place in the endoplasmic reticulum quality control compartment (ERQC). tmpzr1t_l9r_go_relaxed.owl protein alpha-1,2-demannosylation in endoplasmic reticulum|ER protein alpha-1,2-demannosylation|glycoprotein mannose trimming in ER quality control compartment|glycoprotein mannose trimming in endoplasmic reticulum quality control compartment|protein alpha-1,2-demannosylation in ERQC|protein alpha-1,2-demannosylation in ER quality control compartment|glycoprotein mannose trimming in ER-derived quality control compartment|protein alpha-1,2-demannosylation in endoplasmic reticulum quality control compartment|protein alpha-1,2-demannosylation in ER|protein alpha-1,2-demannosylation in ER-derived quality control compartment|ER mannose trimming|glycoprotein mannose trimming in ERQC bf 2015-06-23T09:35:41Z biological_process owl:Class GO:0070250 biolink:NamedThing mating projection membrane The portion of the plasma membrane surrounding a mating projection, the projection formed by unicellular fungi in response to mating pheromone. tmpzr1t_l9r_go_relaxed.owl shmoo membrane cellular_component owl:Class GO:0006089 biolink:NamedThing lactate metabolic process The chemical reactions and pathways involving lactate, the anion of lactic acid. tmpzr1t_l9r_go_relaxed.owl 2-hydroxypropanoate metabolic process|alpha-hydroxypropionate metabolism|alpha-hydroxypropionate metabolic process|lactate metabolism|2-hydroxypropanoate metabolism biological_process owl:Class GO:1901923 biolink:NamedThing negative regulation of sclerotium development Any process that stops, prevents or reduces the frequency, rate or extent of sclerotium development. tmpzr1t_l9r_go_relaxed.owl down regulation of sclerotium development|inhibition of sclerotium development|downregulation of sclerotium development|down-regulation of sclerotium development di 2013-02-15T20:00:23Z biological_process owl:Class GO:0030729 biolink:NamedThing acetoacetate-CoA ligase activity Catalysis of the reaction: acetoacetate + ATP + CoA = acetoacetyl-CoA + AMP + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl acetoacetyl-CoA synthetase activity|acetoacetate:CoA ligase (AMP-forming) EC:6.2.1.16|MetaCyc:ACETOACETATE--COA-LIGASE-RXN|Reactome:R-HSA-5694494|RHEA:16117|KEGG_REACTION:R01357 molecular_function owl:Class GO:0061926 biolink:NamedThing positive regulation of formation of radial glial scaffolds Any process that increases the frequency, rate or extent of the formation of radial glial cell scaffolds. tmpzr1t_l9r_go_relaxed.owl positive regulation of Bergmann fiber biosynthesis|positive regulation of radial glial scaffold formation|positive regulation of Bergmann fiber formation dph 2017-08-02T16:29:37Z biological_process owl:Class GO:1902797 biolink:NamedThing negative regulation of snoRNA processing Any process that stops, prevents or reduces the frequency, rate or extent of snoRNA processing. tmpzr1t_l9r_go_relaxed.owl downregulation of snoRNA processing|down-regulation of snoRNA processing|down regulation of snoRNA processing|inhibition of snoRNA processing mah 2014-03-24T12:47:08Z biological_process owl:Class GO:1903667 biolink:NamedThing regulation of chemorepellent activity Any process that modulates the frequency, rate or extent of chemorepellent activity. tmpzr1t_l9r_go_relaxed.owl regulation of chemorepellant activity pf 2014-11-26T23:58:33Z biological_process owl:Class GO:0030317 biolink:NamedThing flagellated sperm motility The directed, self-propelled movement of a cilium (aka flagellum) that contributes to the movement of a flagellated sperm. tmpzr1t_l9r_go_relaxed.owl sperm flagellum movement involved in flagellated sperm motility|sperm motility|sperm flagellum movement|sperm movement|flagellated sperm movement|sperm flagellum movement involved in flagellated sperm movement Wikipedia:Sperm_motility GO:1905419|GO:0097724 biological_process owl:Class GO:0060294 biolink:NamedThing cilium movement involved in cell motility Movement of cilia mediated by motor proteins that contributes to the movement of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002862 biolink:NamedThing negative regulation of inflammatory response to antigenic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of inflammatory response to antigenic stimulus|down regulation of inflammatory response to antigenic stimulus|inhibition of inflammatory response to antigenic stimulus|downregulation of inflammatory response to antigenic stimulus biological_process owl:Class GO:0014910 biolink:NamedThing regulation of smooth muscle cell migration Any process that modulates the frequency, rate or extent of smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904544 biolink:NamedThing positive regulation of free ubiquitin chain polymerization Any process that activates or increases the frequency, rate or extent of free ubiquitin chain polymerization. tmpzr1t_l9r_go_relaxed.owl upregulation of free ubiquitin chain polymerization|up regulation of free ubiquitin chain polymerization|up-regulation of free ubiquitin chain polymerization|activation of free ubiquitin chain polymerization An example of this is PARK2 in human (UniProt symbol O60260) in PMID:24660806 (inferred from mutant phenotype). pad 2015-08-11T11:45:06Z biological_process owl:Class GO:0002260 biolink:NamedThing lymphocyte homeostasis The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001776 biolink:NamedThing leukocyte homeostasis The process of regulating the proliferation and elimination of cells of the immune system such that the total number of cells of a particular cell type within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl immune cell homeostasis|leucocyte homeostasis Note that this term represents the return of immune system cell levels to stable numbers following an immune response as well as the proliferation and elimination of cells of the immune system required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0015943 biolink:NamedThing formate biosynthetic process The chemical reactions and pathways resulting in the formation of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. tmpzr1t_l9r_go_relaxed.owl formic acid biosynthesis|formic acid biosynthetic process|formate formation|formate biosynthesis|formate anabolism|formate synthesis biological_process owl:Class GO:0090502 biolink:NamedThing RNA phosphodiester bond hydrolysis, endonucleolytic The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T12:05:27Z biological_process owl:Class GO:0090501 biolink:NamedThing RNA phosphodiester bond hydrolysis The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T12:05:27Z biological_process owl:Class GO:0006820 biolink:NamedThing anion transport The directed movement of anions, atoms or small molecules with a net negative charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl GO:0006822 biological_process owl:Class GO:0035985 biolink:NamedThing senescence-associated heterochromatin focus A transcriptionally-silent heterochromatin structure present in senescent cells. Contains the condensed chromatin of one chromosome and is enriched for histone modifications. Thought to repress expression of proliferation-promoting genes. tmpzr1t_l9r_go_relaxed.owl SAHF|senescence-associated heterochromatin foci bf 2011-08-25T04:36:40Z cellular_component owl:Class GO:0000792 biolink:NamedThing heterochromatin A compact and highly condensed form of chromatin. tmpzr1t_l9r_go_relaxed.owl nuclear heterochromatin Wikipedia:Heterochromatin|NIF_Subcellular:sao581845896 GO:0005720 cellular_component owl:Class GO:0045754 biolink:NamedThing positive regulation of acetate catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl stimulation of acetate catabolic process|up regulation of acetate catabolic process|upregulation of acetate catabolic process|positive regulation of acetate catabolism|positive regulation of acetate degradation|up-regulation of acetate catabolic process|positive regulation of acetate breakdown|activation of acetate catabolic process biological_process owl:Class GO:0048198 biolink:NamedThing Golgi vesicle bud deformation and release The process in which cytosolic coat proteins fit together in a basketlike convex framework to form a coated deformed region on the cytoplasmic surface of the membrane. The deformed region forms into a complete vesicle and is released. tmpzr1t_l9r_go_relaxed.owl Golgi-derived vesicle bud deformation and release|dictyosome vesicle bud deformation biological_process owl:Class GO:0140345 biolink:NamedThing phosphatidylcholine flippase activity Catalysis of the movement of phosphatidylcholine from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine flippase activity (exoplasmic to cytosolic leaftlet) pg 2019-05-16T13:43:47Z molecular_function owl:Class GO:0140333 biolink:NamedThing glycerophospholipid flippase activity Catalysis of the movement of a glycerophospholipid from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl glycerophospholipid flippase activity (exoplasmic to cytosolic leaftlet) pg 2019-05-13T11:14:56Z molecular_function owl:Class GO:0060351 biolink:NamedThing cartilage development involved in endochondral bone morphogenesis The process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondral bones. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051216 biolink:NamedThing cartilage development The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl cartilage element development|chondrogenesis|cartilage biogenesis|cartilage formation|cartilage biosynthesis|cartilage organ development Wikipedia:Chondrogenesis biological_process owl:Class GO:0033031 biolink:NamedThing positive regulation of neutrophil apoptotic process Any process that activates or increases the frequency, rate, or extent of neutrophil apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of neutrophil apoptosis|stimulation of neutrophil apoptosis|up-regulation of neutrophil apoptosis|upregulation of neutrophil apoptosis|activation of neutrophil apoptosis|up regulation of neutrophil apoptosis biological_process owl:Class GO:0033029 biolink:NamedThing regulation of neutrophil apoptotic process Any process that modulates the frequency, rate, or extent of neutrophil apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of neutrophil apoptosis biological_process owl:Class GO:1901477 biolink:NamedThing benomyl transmembrane transport The directed movement of benomyl across a membrane. tmpzr1t_l9r_go_relaxed.owl benomyl membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. tb 2012-10-04T23:11:36Z biological_process owl:Class GO:1902329 biolink:NamedThing bacterial-type DNA replication termination Any DNA replication termination that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication termination involved in bacterial-type DNA replication jl 2013-07-25T10:48:10Z biological_process owl:Class GO:1902294 biolink:NamedThing cell cycle DNA replication termination Any DNA replication termination that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication termination involved in cell cycle DNA replication jl 2013-07-09T16:06:11Z biological_process owl:Class GO:0010060 biolink:NamedThing negative regulation of atrichoblast fate specification Any process that suppresses atrichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl downregulation of atrichoblast fate|down regulation of atrichoblast fate|down-regulation of atrichoblast fate|inhibition of atrichoblast fate biological_process owl:Class GO:0032293 biolink:NamedThing non-myelinated axon ensheathment in central nervous system The process in which a non-myelinating glial cell membrane encircles an axon in the central nervous system. tmpzr1t_l9r_go_relaxed.owl ensheathment of non-myelinated axons in central nervous system biological_process owl:Class GO:0032291 biolink:NamedThing axon ensheathment in central nervous system The process in which a glial cell membrane closes around an axon in the central nervous system. This can be a myelinating or a non-myelinating neuron-glial interaction. tmpzr1t_l9r_go_relaxed.owl ensheathment of axons in central nervous system biological_process owl:Class GO:1903785 biolink:NamedThing L-valine transmembrane transport The directed movement of L-valine across a membrane. tmpzr1t_l9r_go_relaxed.owl al 2015-01-08T14:50:32Z biological_process owl:Class GO:0005009 biolink:NamedThing insulin-activated receptor activity Combining with insulin and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl insulin receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand insulin. For receptors that bind other extracellular ligands, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:0004714 biolink:NamedThing transmembrane receptor protein tyrosine kinase activity Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl receptor protein-tyrosine kinase activity|receptor protein tyrosine kinase activity Reactome:R-HSA-198295|Reactome:R-HSA-167683|Reactome:R-HSA-8950757|Reactome:R-HSA-8950269|Reactome:R-HSA-8987084|Reactome:R-HSA-8987096|Reactome:R-HSA-166544|Reactome:R-HSA-8986995|Reactome:R-HSA-8987202|Reactome:R-HSA-74742|Reactome:R-HSA-8852552|Reactome:R-HSA-8950340|Reactome:R-HSA-8983300|Reactome:R-HSA-8950453|Reactome:R-HSA-6784324|Reactome:R-HSA-8987012|Reactome:R-HSA-8950354|Reactome:R-HSA-8986994|Reactome:R-HSA-8987042|Reactome:R-HSA-8987141|Reactome:R-HSA-8987040|Reactome:R-HSA-8987070|EC:2.7.10.1|Reactome:R-HSA-8987150|Reactome:R-HSA-167019|Reactome:R-HSA-8950485|Reactome:R-HSA-8950537|Reactome:R-HSA-177933|Reactome:R-HSA-8983371|Reactome:R-HSA-8983309|Reactome:R-HSA-8950591|Reactome:R-HSA-8950405|Reactome:R-HSA-8987129|Reactome:R-HSA-8987255|Reactome:R-HSA-74715|Reactome:R-HSA-8950364|Reactome:R-HSA-8982163|MetaCyc:2.7.10.1-RXN|Reactome:R-HSA-8987179|Reactome:R-HSA-8853792|Reactome:R-HSA-8986985|Reactome:R-HSA-74711|Reactome:R-HSA-8950423|Reactome:R-HSA-169905|Reactome:R-HSA-8983424 molecular_function owl:Class GO:0032414 biolink:NamedThing positive regulation of ion transmembrane transporter activity Any process that activates or increases the activity of an ion transporter. tmpzr1t_l9r_go_relaxed.owl up-regulation of ion transporter activity|upregulation of ion transporter activity|positive regulation of ion transporter activity|activation of ion transporter activity|stimulation of ion transporter activity|up regulation of ion transporter activity biological_process owl:Class GO:0046078 biolink:NamedThing dUMP metabolic process The chemical reactions and pathways involving dUMP, deoxyuridine (5'-)monophosphate (2'-deoxyuridine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dUMP metabolism biological_process owl:Class GO:0042360 biolink:NamedThing vitamin E metabolic process The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. tmpzr1t_l9r_go_relaxed.owl alpha-tocopherol metabolism|tocopherol metabolic process|vitamin E metabolism|alpha-tocopherol metabolic process|tocopherol metabolism biological_process owl:Class GO:0044545 biolink:NamedThing NSL complex A histone acetyltransferase complex that catalyzes the acetylation of a histone H4 lysine residues at several positions. In human, it contains the catalytic subunit MOF, NSL1/KIAA1267, NSL2/KANSL2, NSL3/KANSL3, MCRS1, PHF20, OGT1, WDR5 and HCF1. tmpzr1t_l9r_go_relaxed.owl non-specific lethal complex jl 2012-03-22T12:49:18Z cellular_component owl:Class GO:1902562 biolink:NamedThing H4 histone acetyltransferase complex A protein complex which is capable of H4 histone acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl Hpa3 complex|Hpa3 (homo-)dimer An example of this is Hpa2 in yeast [Q06592] in PMID:23775086 [IDA]. bhm 2013-12-10T14:43:51Z cellular_component owl:Class GO:0004662 biolink:NamedThing CAAX-protein geranylgeranyltransferase activity Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families. tmpzr1t_l9r_go_relaxed.owl GGTase-I activity|geranylgeranyl-diphosphate:protein-cysteine geranyltransferase activity|type I protein geranyl-geranyltransferase activity|GGTaseI activity|geranylgeranyltransferase type I activity|protein geranylgeranyltransferase type I MetaCyc:RXN-3701|EC:2.5.1.59|MetaCyc:2.5.1.60-RXN molecular_function owl:Class GO:0004661 biolink:NamedThing protein geranylgeranyltransferase activity Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein. tmpzr1t_l9r_go_relaxed.owl protein-cysteine geranylgeranyltransferase activity GO:0018224 molecular_function owl:Class GO:0090301 biolink:NamedThing negative regulation of neural crest formation Any process that decreases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes. tmpzr1t_l9r_go_relaxed.owl tb 2010-03-12T04:08:26Z biological_process owl:Class GO:0031338 biolink:NamedThing regulation of vesicle fusion Any process that modulates the frequency, rate or extent of vesicle fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043555 biolink:NamedThing regulation of translation in response to stress Modulation of the frequency, rate or extent of translation as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl translational stress response biological_process owl:Class GO:0015111 biolink:NamedThing iodide transmembrane transporter activity Enables the transfer of iodide ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5627802|Reactome:R-HSA-5627870|Reactome:R-HSA-209910 molecular_function owl:Class GO:0035820 biolink:NamedThing negative regulation of renal sodium excretion by angiotensin The process in which angiotensin decreases the amount of sodium that is excreted in urine over a unit of time. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T02:10:50Z biological_process owl:Class GO:0003083 biolink:NamedThing negative regulation of renal output by angiotensin The process in which angiotensin directly decreases the rate of natriuresis and diuresis in the kidney. tmpzr1t_l9r_go_relaxed.owl angiotensin mediated negative regulation of renal output|angiotensin-mediated negative regulation of renal output biological_process owl:Class GO:0060884 biolink:NamedThing clearance of cells from fusion plate The morphogenetic process in which cells are removed from the inner loop of a semicircular canal. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T12:25:59Z biological_process owl:Class GO:0034369 biolink:NamedThing plasma lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within a plasma lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the esterification of cholesterol by phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034368 biolink:NamedThing protein-lipid complex remodeling The acquisition, loss or modification of a protein or lipid within a protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097485 biolink:NamedThing neuron projection guidance The process in which the migration of a neuron projection is directed to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl neuron process guidance|neuronal cell projection guidance|neurite guidance|neuron protrusion guidance pr 2013-07-08T13:32:37Z biological_process owl:Class GO:0006928 biolink:NamedThing movement of cell or subcellular component The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore. tmpzr1t_l9r_go_relaxed.owl cellular component motion|cell movement|cellular component movement Note that in GO cellular components include whole cells (cell is_a cellular component). biological_process owl:Class GO:0071232 biolink:NamedThing cellular response to histidine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:09:15Z biological_process owl:Class GO:0071230 biolink:NamedThing cellular response to amino acid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups. tmpzr1t_l9r_go_relaxed.owl cellular response to amino acid mah 2009-12-03T02:08:11Z biological_process owl:Class GO:2001286 biolink:NamedThing regulation of caveolin-mediated endocytosis Any process that modulates the frequency, rate or extent of caveolin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of caveolin-dependent endocytosis|regulation of caveolae-dependent endocytosis|regulation of caveolae-mediated endocytosis yaf 2011-12-15T04:13:19Z biological_process owl:Class GO:0102707 biolink:NamedThing S-adenosyl-L-methionine:beta-alanine N-methyltransferase activity Catalysis of the reaction: beta-alanine + S-adenosyl-L-methionine = H+ + N-methyl-beta-alanine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6461|EC:2.1.1.49 molecular_function owl:Class GO:0140652 biolink:NamedThing pyripyropene A biosynthetic process The chemical reactions and pathways resulting in the formation of pyripyropene A. tmpzr1t_l9r_go_relaxed.owl pyripyropene A formation|pyripyropene A synthesis|pyripyropene A biosynthesis|pyripyropene A anabolism https://github.com/geneontology/go-ontology/issues/21496 pg 2021-05-27T08:33:29Z biological_process owl:Class GO:0051103 biolink:NamedThing DNA ligation involved in DNA repair The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair. tmpzr1t_l9r_go_relaxed.owl DNA ligation during DNA repair biological_process owl:Class GO:0008348 biolink:NamedThing negative regulation of antimicrobial humoral response Any process that stops, prevents, or reduces the frequency, rate, or extent of an antimicrobial humoral response. tmpzr1t_l9r_go_relaxed.owl inhibition of antimicrobial humoral response|attenuation of antimicrobial humoral response|down regulation of antimicrobial humoral response|downregulation of antimicrobial humoral response|down-regulation of antimicrobial humoral response GO:0042154|GO:0042155 biological_process owl:Class GO:0072199 biolink:NamedThing regulation of mesenchymal cell proliferation involved in ureter development Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation that contributes to the progression of the ureter gland over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl regulation of ureteral mesenchymal cell proliferation|regulation of ureter mesenchymal cell proliferation mah 2010-03-01T03:38:13Z biological_process owl:Class GO:1990724 biolink:NamedThing galectin complex A homodimeric protein complex that is capable of binding a range of carbohydrates and is involved in anti-inflammatory and pro-apoptotic processes. tmpzr1t_l9r_go_relaxed.owl galectin-2 complex|galectin-1 complex An example of this is Galectin-1 in human (P09382) in PMID:15476813 (inferred from physical interaction). bhm 2015-04-07T15:03:15Z cellular_component owl:Class GO:0098635 biolink:NamedThing protein complex involved in cell-cell adhesion Any protein complex that is capable of carrying out some part of the process of cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042989 biolink:NamedThing sequestering of actin monomers The selective interaction of actin monomers with specific molecules that inhibit their polymerization by preventing their access to other monomers. tmpzr1t_l9r_go_relaxed.owl actin monomer sequestering activity|storage of actin monomers|retention of actin monomers|actin monomer retention|actin monomer sequestering|actin monomer storage|actin monomer sequestration|sequestration of actin monomers biological_process owl:Class GO:0062128 biolink:NamedThing MutSgamma complex A heterodimer involved in the stabilization of DNA recombination intermediates, the promotion of crossover recombination, and the proper assembly of the synaptonemal complex in meiotic prophase nuclei. In yeast the complex consists of two subunits, Msh4 and Msh5. tmpzr1t_l9r_go_relaxed.owl Msh4-Msh5 complex dph 2019-06-04T14:48:15Z cellular_component owl:Class GO:0103081 biolink:NamedThing methylthiopropylmalate dehydrogenase activity Catalysis of the reaction: 3-(3'-methylthio)propylmalate <=> H+ + 2-oxo-6-methylthiohexanoate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4165 molecular_function owl:Class GO:0019588 biolink:NamedThing anaerobic glycerol catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of glycerol, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glycerol fermentation biological_process owl:Class GO:0019563 biolink:NamedThing glycerol catabolic process The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. tmpzr1t_l9r_go_relaxed.owl glycerol breakdown|glycerol degradation|glycerol catabolism MetaCyc:PWY0-381|MetaCyc:PWY-4261 biological_process owl:Class GO:0102229 biolink:NamedThing amylopectin maltohydrolase activity Catalysis of the reaction: n H2O + an exposed unphosphorylated, unbranched malto-oligosaccharide tail on amylopectin <=> amylopectin + maltose. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.2|MetaCyc:RXN-12278 molecular_function owl:Class GO:0043455 biolink:NamedThing regulation of secondary metabolic process Any process that modulates the frequency, rate or extent of secondary metabolism, the chemical reactions and pathways involving compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. tmpzr1t_l9r_go_relaxed.owl regulation of secondary metabolism biological_process owl:Class GO:1902835 biolink:NamedThing negative regulation of proline import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of proline import into cell. tmpzr1t_l9r_go_relaxed.owl inhibition of proline import into cell|down regulation of proline import into cell|down-regulation of proline import into cell|downregulation of proline import into cell|negative regulation of proline import into cell mah 2014-04-01T13:44:06Z biological_process owl:Class GO:1902834 biolink:NamedThing regulation of proline import across plasma membrane Any process that modulates the frequency, rate or extent of proline import into cell. tmpzr1t_l9r_go_relaxed.owl regulation of proline import into cell mah 2014-04-01T13:44:00Z biological_process owl:Class GO:0006248 biolink:NamedThing CMP catabolic process The chemical reactions and pathways resulting in the breakdown of CMP, cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP catabolism|CMP breakdown|CMP degradation biological_process owl:Class GO:0009175 biolink:NamedThing pyrimidine ribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside monophosphate degradation|pyrimidine ribonucleoside monophosphate breakdown|pyrimidine ribonucleoside monophosphate catabolism biological_process owl:Class GO:0043463 biolink:NamedThing regulation of rhamnose catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose. tmpzr1t_l9r_go_relaxed.owl regulation of rhamnose breakdown|regulation of rhamnose degradation|regulation of rhamnose catabolism biological_process owl:Class GO:0046541 biolink:NamedThing saliva secretion The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin. tmpzr1t_l9r_go_relaxed.owl salivation Wikipedia:Salivation biological_process owl:Class GO:1905626 biolink:NamedThing positive regulation of L-methionine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-methionine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-29T16:27:46Z biological_process owl:Class GO:0004707 biolink:NamedThing MAP kinase activity Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli. tmpzr1t_l9r_go_relaxed.owl ERK|MBP kinase I activity|mitogen activated kinase activity|mitogen-activated protein kinase activity|MAP kinase 1 activity|SAPK|ERK2|MBP kinase II activity|MAPK|stress-activated kinase activity|ERK1|stress-activated protein kinase activity|extracellular signal-regulated kinase activity|myelin basic protein kinase activity|SAP kinase activity|MAP kinase 2 activity|ATP:protein phosphotransferase (MAPKK-activated) activity EC:2.7.11.24|Reactome:R-HSA-198733|Reactome:R-HSA-451366|Reactome:R-HSA-5654566|Reactome:R-HSA-5654565|Reactome:R-HSA-111898|Reactome:R-HSA-5654560|MetaCyc:2.7.11.24-RXN|Reactome:R-HSA-445079|KEGG_REACTION:R00162|Reactome:R-HSA-5654562|Reactome:R-HSA-73722|Reactome:R-HSA-9626832 GO:0008338|GO:0008339|GO:0016908|GO:0016909 molecular_function owl:Class GO:0004303 biolink:NamedThing estradiol 17-beta-dehydrogenase activity Catalysis of the reaction: estradiol-17-beta + NADP+ = estrone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 17beta-hydroxysteroid dehydrogenase activity|20alpha-hydroxysteroid dehydrogenase|estradiol-17beta:NAD(P)+ 17-oxidoreductase activity|17beta,20alpha-hydroxysteroid dehydrogenase activity|17beta-HSD|estrogen 17-oxidoreductase activity|estradiol dehydrogenase activity|17-beta-estradiol dehydrogenase activity|estradiol 17beta-dehydrogenase activity|17-beta-hydroxysteroid dehydrogenase activity|17-beta-HSD activity|17beta-estradiol dehydrogenase activity EC:1.1.1.62|Reactome:R-HSA-5696822|Reactome:R-HSA-5693390|Reactome:R-HSA-6810594|Reactome:R-HSA-804969|MetaCyc:ESTRADIOL-17-BETA-DEHYDROGENASE-RXN|Reactome:R-HSA-8862137 molecular_function owl:Class GO:2000485 biolink:NamedThing regulation of glutamine transport Any process that modulates the frequency, rate or extent of glutamine transport. tmpzr1t_l9r_go_relaxed.owl regulation of L-glutamine transport bf 2011-03-11T09:32:23Z biological_process owl:Class GO:0060873 biolink:NamedThing anterior semicircular canal development The progession of the anterior semicircular canal from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:39:49Z biological_process owl:Class GO:0019360 biolink:NamedThing nicotinamide nucleotide biosynthetic process from niacinamide The chemical reactions and pathways resulting in the formation of nicotinamide nucleotide from other compounds, including niacinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide nucleotide synthesis from niacinamide|nicotinamide nucleotide formation from niacinamide|nicotinamide nucleotide anabolism from niacinamide biological_process owl:Class GO:0042200 biolink:NamedThing cyanuric acid catabolic process The chemical reactions and pathways resulting in the breakdown of cyanuric acid, a potential degradation product of triazine herbicides. tmpzr1t_l9r_go_relaxed.owl cyanuric acid breakdown|cyanuric acid catabolism|cyanuric acid degradation UM-BBD_pathwayID:cya biological_process owl:Class GO:0042199 biolink:NamedThing cyanuric acid metabolic process The chemical reactions and pathways involving cyanuric acid, a suspected gastrointestinal or liver toxicant, and a potential degradation product of triazine herbicides, such as atrazine and simazine. It is widely used for the stabilization of available chlorine in swimming pool water and is also the starting compound for the synthesis of many organic derivatives. tmpzr1t_l9r_go_relaxed.owl cyanuric acid metabolism biological_process owl:Class GO:0051554 biolink:NamedThing flavonol metabolic process The chemical reactions and pathways involving flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. tmpzr1t_l9r_go_relaxed.owl flavonol metabolism biological_process owl:Class GO:0102721 biolink:NamedThing ubiquinol:oxygen oxidoreductase activity Catalysis of the reaction: O2 + 2 an ubiquinol = 2 H2O + 2 an ubiquinone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6883|EC:1.10.3.11|RHEA:30255 molecular_function owl:Class GO:0032361 biolink:NamedThing pyridoxal phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042822 biolink:NamedThing pyridoxal phosphate metabolic process The chemical reactions and pathways involving pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl active vitamin B6 metabolism|active vitamin B6 metabolic process|pyridoxal phosphate metabolism biological_process owl:Class GO:0052710 biolink:NamedThing N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolic process The chemical reactions and pathways resulting in the breakdown of N-alpha,N-alpha,N-alpha-trimethyl-L-histidine, also known as histidine betaine or hercynine, a trimethylated derivative of histidine. tmpzr1t_l9r_go_relaxed.owl hercynine breakdown|histidine betaine breakdown|hercynine catabolism|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine breakdown|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolism|histidine betaine degradation|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine degradation|histidine betaine catabolic process|histidine betaine catabolism|hercynine catabolic process|hercynine degradation ai 2011-08-05T02:22:54Z biological_process owl:Class GO:0052708 biolink:NamedThing N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process The chemical reactions and pathways involving N-alpha,N-alpha,N-alpha-trimethyl-L-histidine, also known as histidine betaine or hercynine, a trimethylated derivative of histidine. tmpzr1t_l9r_go_relaxed.owl histidine betaine metabolism|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolism|histidine betaine metabolic process|hercynine metabolism|hercynine metabolic process ai 2011-08-05T02:13:31Z biological_process owl:Class GO:0150136 biolink:NamedThing regulation of interleukin-37 production Any process that modulates the frequency, rate or extent of interleukin-37 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-37 biosynthetic process bc 2019-12-08T08:39:07Z biological_process owl:Class GO:1903257 biolink:NamedThing selenoneine biosynthetic process The chemical reactions and pathways resulting in the formation of selenoneine. tmpzr1t_l9r_go_relaxed.owl selenoneine anabolism|selenoneine synthesis|selenoneine formation|selenoneine biosynthesis|L-selenoneine biosynthetic process mah 2014-08-06T09:14:33Z biological_process owl:Class GO:0006578 biolink:NamedThing amino-acid betaine biosynthetic process The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid. tmpzr1t_l9r_go_relaxed.owl betaine formation|betaine biosynthesis|betaine anabolism|betaine synthesis|betaine biosynthetic process biological_process owl:Class GO:0045837 biolink:NamedThing negative regulation of membrane potential Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl downregulation of membrane potential|down regulation of membrane potential|reduction of membrane potential|inhibition of membrane potential|down-regulation of membrane potential biological_process owl:Class GO:1901610 biolink:NamedThing positive regulation of vesicle transport along microtubule Any process that activates or increases the frequency, rate or extent of vesicle transport along microtubule. tmpzr1t_l9r_go_relaxed.owl positive regulation of microtubule-based vesicle localization|up regulation of microtubule-based vesicle localization|activation of microtubule-based vesicle localization|upregulation of microtubule-based vesicle localization|up-regulation of microtubule-based vesicle localization|activation of vesicle transport along microtubule|up-regulation of vesicle transport along microtubule|upregulation of vesicle transport along microtubule|up regulation of vesicle transport along microtubule hjd 2012-11-08T21:49:53Z biological_process owl:Class GO:1901608 biolink:NamedThing regulation of vesicle transport along microtubule Any process that modulates the frequency, rate or extent of vesicle transport along microtubule. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule-based vesicle localization hjd 2012-11-08T21:49:44Z biological_process owl:Class GO:1905574 biolink:NamedThing ganglioside GM2 binding Binding to ganglioside GM2. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T11:17:01Z molecular_function owl:Class GO:1990615 biolink:NamedThing Kelch-containing formin regulatory complex A protein complex that regulates actin cable formation, polarized cell growth, and cytokinesis in a formin-dependent manner. In S. cerevisiae the complex is composed of Bud14p and two Kelch family proteins, Kel1p and Kel2p. tmpzr1t_l9r_go_relaxed.owl KFRC complex|Bud14-Kel1-Kel2 complex mcc 2015-01-21T18:48:51Z cellular_component owl:Class GO:0019982 biolink:NamedThing interleukin-7 binding Binding to interleukin-7. tmpzr1t_l9r_go_relaxed.owl IL-7 binding molecular_function owl:Class GO:0016474 biolink:NamedThing sodium ion-transporting V-type ATPase complex A sodium ion-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of sodium ions across a concentration gradient. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl sodium-translocating V-type ATPase complex cellular_component owl:Class GO:0016472 biolink:NamedThing sodium ion-transporting two-sector ATPase complex A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of sodium ions across a membrane. The complex comprises a membrane sector (F0 or V0) that carries out ion transport and a cytoplasmic compartment sector (F1 or V1) that catalyzes ATP synthesis or hydrolysis. tmpzr1t_l9r_go_relaxed.owl sodium-transporting two-sector ATPase complex cellular_component owl:Class GO:0046888 biolink:NamedThing negative regulation of hormone secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a hormone from a cell. tmpzr1t_l9r_go_relaxed.owl down regulation of hormone secretion|down-regulation of hormone secretion|inhibition of hormone secretion|downregulation of hormone secretion biological_process owl:Class GO:0005161 biolink:NamedThing platelet-derived growth factor receptor binding Binding to a platelet-derived growth factor receptor. tmpzr1t_l9r_go_relaxed.owl platelet-derived growth factor receptor ligand|PDGF|PDGFR binding|PDGF receptor binding|platelet-derived growth factor molecular_function owl:Class GO:0070535 biolink:NamedThing histone H2A K63-linked ubiquitination A histone ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a lysine residue in histone H2A or the variant H2AX. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033522 biolink:NamedThing histone H2A ubiquitination The modification of histone H2A by addition of one or more ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061310 biolink:NamedThing canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in cardiac neural crest cell differentiation. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in cardiac neural crest cell differentiation involved in heart development|canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development|canonical Wnt-activated signaling pathway involved in cardiac neural crest cell differentiation involved in heart development dph 2010-09-23T09:12:36Z biological_process owl:Class GO:0044335 biolink:NamedThing canonical Wnt signaling pathway involved in neural crest cell differentiation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in neural crest cell differentiation. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|canonical Wnt receptor signalling pathway involved in neural crest cell differentiation|canonical Wnt-activated signaling pathway involved in neural crest cell differentiation jl 2010-08-20T03:02:34Z biological_process owl:Class GO:0009374 biolink:NamedThing biotin binding Binding to biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. tmpzr1t_l9r_go_relaxed.owl vitamin H binding|vitamin B7 binding molecular_function owl:Class GO:1901201 biolink:NamedThing regulation of extracellular matrix assembly Any process that modulates the frequency, rate or extent of extracellular matrix assembly. tmpzr1t_l9r_go_relaxed.owl rl 2012-07-27T04:04:00Z biological_process owl:Class GO:0060974 biolink:NamedThing cell migration involved in heart formation The orderly movement of a cell from one site to another that contribute to the formation of the heart. The initial heart structure is made up of mesoderm-derived heart progenitor cells and neural crest-derived cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T10:56:33Z biological_process owl:Class GO:1904333 biolink:NamedThing positive regulation of error-prone translesion synthesis Any process that activates or increases the frequency, rate or extent of error-prone translesion synthesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of mutagenic PRR|up regulation of mutagenic postreplication DNA repair|positive regulation of error-prone postreplication DNA repair|positive regulation of mutagenic PRR|activation of error-prone translesion synthesis|upregulation of mutagenic postreplication DNA repair|upregulation of mutagenic PRR|up regulation of error-prone translesion synthesis|upregulation of error-prone postreplication DNA repair|activation of mutagenic PRR|activation of mutagenic postreplication DNA repair|up-regulation of mutagenic postreplication DNA repair|upregulation of error-prone translesion synthesis|up-regulation of error-prone translesion synthesis|positive regulation of mutagenic postreplication DNA repair|up regulation of mutagenic PRR|up-regulation of error-prone postreplication DNA repair|activation of error-prone postreplication DNA repair|up regulation of error-prone postreplication DNA repair kmv 2015-06-11T16:25:10Z biological_process owl:Class GO:0045739 biolink:NamedThing positive regulation of DNA repair Any process that activates or increases the frequency, rate or extent of DNA repair. tmpzr1t_l9r_go_relaxed.owl up regulation of DNA repair|stimulation of DNA repair|activation of DNA repair|upregulation of DNA repair|up-regulation of DNA repair biological_process owl:Class GO:0033902 biolink:NamedThing rRNA endonuclease activity Catalysis of the hydrolysis of the phosphodiester linkage between guanosine and adenosine residues at one specific position in 28S rRNA from rat ribosomes. tmpzr1t_l9r_go_relaxed.owl alpha-sarcin MetaCyc:3.1.27.10-RXN|EC:4.6.1.23 molecular_function owl:Class GO:0009223 biolink:NamedThing pyrimidine deoxyribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleotide breakdown|pyrimidine deoxyribonucleotide degradation|pyrimidine deoxyribonucleotide catabolism biological_process owl:Class GO:0046386 biolink:NamedThing deoxyribose phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. tmpzr1t_l9r_go_relaxed.owl deoxyribose phosphate catabolism|deoxyribose phosphate breakdown|deoxyribose phosphate degradation biological_process owl:Class GO:0098773 biolink:NamedThing skin epidermis development The process whose specific outcome is the progression of the skin epidermis over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008544 biolink:NamedThing epidermis development The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. tmpzr1t_l9r_go_relaxed.owl hypodermis development biological_process owl:Class GO:0001411 biolink:NamedThing hyphal tip The end, or tip, of a fungal hypha, where polarized growth occurs during hyphal elongation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140338 biolink:NamedThing sphingomyelin transfer activity Removes a sphingomyelin from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. tmpzr1t_l9r_go_relaxed.owl sphingomyelin carrier activity|sphingosine transmembrane transporter activity pg 2019-05-16T11:31:58Z GO:0010175 molecular_function owl:Class GO:0120014 biolink:NamedThing phospholipid transfer activity Removes a phospholipid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl intermembrane phospholipid transfer activity|phospholipid carrier activity https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T03:34:17Z molecular_function owl:Class GO:0046345 biolink:NamedThing abscisic acid catabolic process The chemical reactions and pathways resulting in the breakdown of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. tmpzr1t_l9r_go_relaxed.owl abscisic acid degradation|abscisic acid catabolism|abscisic acid breakdown biological_process owl:Class GO:0043290 biolink:NamedThing apocarotenoid catabolic process The chemical reactions and pathways resulting in the breakdown of apocarotenoids, a class of compounds derived from the oxidative cleavage of carotenoids, many of which are biologically important e.g. retinal and abscisic acid. tmpzr1t_l9r_go_relaxed.owl apo carotenoid catabolic process|apocarotenoid catabolism|apocarotenoid degradation|apocarotenoid breakdown biological_process owl:Class GO:1904445 biolink:NamedThing negative regulation of establishment of Sertoli cell barrier Any process that stops, prevents or reduces the frequency, rate or extent of establishment of Sertoli cell barrier. tmpzr1t_l9r_go_relaxed.owl downregulation of establishment of Sertoli cell barrier|downregulation of establishment of SCB|inhibition of establishment of blood-testis barrier|down-regulation of establishment of Sertoli cell barrier|downregulation of establishment of BTB|negative regulation of establishment of SCB|negative regulation of establishment of BTB|down regulation of establishment of Sertoli cell barrier|inhibition of establishment of BTB|down-regulation of establishment of SCB|negative regulation of establishment of blood-testis barrier|inhibition of establishment of Sertoli cell barrier|down regulation of establishment of blood-testis barrier|down-regulation of establishment of blood-testis barrier|down regulation of establishment of BTB|inhibition of establishment of SCB|downregulation of establishment of blood-testis barrier|down regulation of establishment of SCB|down-regulation of establishment of BTB sl 2015-07-06T16:00:48Z biological_process owl:Class GO:0039690 biolink:NamedThing positive stranded viral RNA replication A viral genome replication process where the template genome is positive stranded, single stranded RNA ((+)ssRNA). Replication of the positive strand leads to dsRNA formation, which in turn is transcribed into positive single stranded RNA. tmpzr1t_l9r_go_relaxed.owl ss(+) viral RNA replication VZ:1116 bf 2013-10-17T15:45:40Z biological_process owl:Class GO:0039694 biolink:NamedThing viral RNA genome replication The replication of a viral RNA genome. tmpzr1t_l9r_go_relaxed.owl bf 2013-10-23T15:24:36Z biological_process owl:Class GO:0034133 biolink:NamedThing positive regulation of toll-like receptor 1 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 1 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR1 signaling pathway|positive regulation of toll-like receptor 1 signalling pathway biological_process owl:Class GO:0035100 biolink:NamedThing ecdysone binding Binding to 20-hydroxyecdysone (ecdysone). Ecdysone is an ecdysteroid produced by the prothoracic glands of immature insects and the ovaries of adult females, which stimulates growth and molting. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043590 biolink:NamedThing bacterial nucleoid The region of a bacterial cell to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904150 biolink:NamedThing negative regulation of microglial cell mediated cytotoxicity Any process that stops, prevents or reduces the frequency, rate or extent of microglial cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl down regulation of microglial cell mediated cytotoxicity|inhibition of microglial cell mediated cytotoxicity|downregulation of microglial cell mediated cytotoxicity|down-regulation of microglial cell mediated cytotoxicity nc 2015-04-15T08:05:35Z biological_process owl:Class GO:0001911 biolink:NamedThing negative regulation of leukocyte mediated cytotoxicity Any process that stops, prevents, or reduces the rate of leukocyte mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl negative regulation of immune cell mediated cytotoxicity|negative regulation of leucocyte mediated cytotoxicity|inhibition of leukocyte mediated cytotoxicity|downregulation of leukocyte mediated cytotoxicity|down-regulation of leukocyte mediated cytotoxicity|down regulation of leukocyte mediated cytotoxicity biological_process owl:Class GO:0010666 biolink:NamedThing positive regulation of cardiac muscle cell apoptotic process Any process that increases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl positive regulation of cardiac muscle cell apoptosis biological_process owl:Class GO:0010663 biolink:NamedThing positive regulation of striated muscle cell apoptotic process Any process that increases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl positive regulation of striated muscle cell apoptosis biological_process owl:Class GO:0003204 biolink:NamedThing cardiac skeleton development The progression of the cardiac skeleton over time, from its formation to the mature structure. The cardiac skeleton is a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart. tmpzr1t_l9r_go_relaxed.owl heart fibrous skeleton development dph 2009-10-13T09:05:04Z biological_process owl:Class GO:0004603 biolink:NamedThing phenylethanolamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + phenylethanolamine = S-adenosyl-L-homocysteine + N-methylphenylethanolamine. tmpzr1t_l9r_go_relaxed.owl norepinephrine N-methyltransferase activity|noradrenalin N-methyltransferase activity|noradrenaline N-methyltransferase activity|phenethanolamine methyltransferase activity|phenethanolamine N-methyltransferase activity|S-adenosyl-L-methionine:phenylethanolamine N-methyltransferase activity|norepinephrine methyltransferase activity MetaCyc:2.1.1.28-RXN|EC:2.1.1.28|RHEA:12176|Reactome:R-HSA-209903 molecular_function owl:Class GO:0000930 biolink:NamedThing gamma-tubulin complex A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016696 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.12.1.- molecular_function owl:Class GO:0016695 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on hydrogen as donor, other acceptors EC:1.12.-.- molecular_function owl:Class GO:0140030 biolink:NamedThing modification-dependent protein binding Binding to a protein upon post-translation modification of the target protein. tmpzr1t_l9r_go_relaxed.owl modified protein binding This term should only be used when the binding is shown to require a post-translational modification: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of the modification. It may be that the PTM causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term. pg 2017-05-17T11:50:41Z molecular_function owl:Class GO:1903226 biolink:NamedThing positive regulation of endodermal cell differentiation Any process that activates or increases the frequency, rate or extent of endodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of endodermal cell differentiation|activation of endoderm cell differentiation|up-regulation of endoderm cell differentiation|up regulation of endodermal cell differentiation|positive regulation of endoderm cell differentiation|upregulation of endoderm cell differentiation|up regulation of endoderm cell differentiation|upregulation of endodermal cell differentiation|activation of endodermal cell differentiation als 2014-07-29T13:22:47Z biological_process owl:Class GO:1903224 biolink:NamedThing regulation of endodermal cell differentiation Any process that modulates the frequency, rate or extent of endodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of endoderm cell differentiation als 2014-07-29T13:22:35Z biological_process owl:Class GO:0060669 biolink:NamedThing embryonic placenta morphogenesis The process in which the embryonic placenta is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T09:33:37Z biological_process owl:Class GO:0072553 biolink:NamedThing terminal button organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a terminal button. A terminal button is the terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. tmpzr1t_l9r_go_relaxed.owl synaptic bouton organization|presynaptic bouton organization|terminal bouton organization|terminal button organisation|bouton organization mah 2011-01-25T04:09:35Z biological_process owl:Class GO:0050145 biolink:NamedThing nucleoside monophosphate kinase activity Catalysis of the reaction: ATP + nucleoside monophosphate = ADP + nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl ATP:nucleoside-phosphate phosphotransferase activity|nucleotide kinase activity|NMP-kinase activity|nucleoside-phosphate kinase activity Reactome:R-HSA-75126|Reactome:R-HSA-73635|Reactome:R-HSA-2162092|MetaCyc:NUCLEOSIDE-PHOSPHATE-KINASE-RXN|Reactome:R-HSA-75125|Reactome:R-HSA-6788810|EC:2.7.4.4|Reactome:R-HSA-73548|Reactome:R-HSA-6788798|RHEA:24036 GO:0019201 molecular_function owl:Class GO:0008315 biolink:NamedThing G2/MI transition of meiotic cell cycle The cell cycle process in which a cell progresses from meiotic G2 phase to M phase of meiosis I. tmpzr1t_l9r_go_relaxed.owl meiotic G2/MI phase transition|meiotic cell cycle G2/MI phase transition|meiotic G2/MI transition biological_process owl:Class GO:0044839 biolink:NamedThing cell cycle G2/M phase transition The cell cycle process by which a cell in G2 phase commits to M phase. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-05T14:56:45Z biological_process owl:Class GO:0072248 biolink:NamedThing metanephric glomerular visceral epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a metanephric glomerular visceral epithelial cell. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric podocyte differentiation mah 2010-03-19T03:44:57Z biological_process owl:Class GO:1901091 biolink:NamedThing negative regulation of protein tetramerization Any process that stops, prevents or reduces the frequency, rate or extent of protein tetramerization. tmpzr1t_l9r_go_relaxed.owl inhibition of protein tetramer formation|inhibition of protein tetramer biosynthetic process|downregulation of protein tetramer assembly|down-regulation of protein tetramerization|downregulation of protein tetramer biosynthesis|down-regulation of protein tetramer assembly|down regulation of protein tetramer assembly|down-regulation of protein tetramer biosynthesis|inhibition of protein tetramer assembly|negative regulation of protein tetramer assembly|down regulation of protein tetramer biosynthetic process|inhibition of protein tetramer biosynthesis|down regulation of protein tetramer formation|down regulation of protein tetramer biosynthesis|down regulation of protein tetramerization|down-regulation of protein tetramer biosynthetic process|downregulation of protein tetramerization|negative regulation of protein tetramer formation|negative regulation of protein tetramer biosynthetic process|downregulation of protein tetramer biosynthetic process|downregulation of protein tetramer formation|negative regulation of protein tetramer biosynthesis|inhibition of protein tetramerization|down-regulation of protein tetramer formation pm 2012-07-06T12:51:24Z biological_process owl:Class GO:0032460 biolink:NamedThing negative regulation of protein oligomerization Any process that stops, prevents, or reduces the frequency, rate or extent of protein oligomerization. tmpzr1t_l9r_go_relaxed.owl down regulation of protein oligomerization|down-regulation of protein oligomerization|downregulation of protein oligomerization|inhibition of protein oligomerization biological_process owl:Class GO:1990701 biolink:NamedThing integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane The component of the ERGIC membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of ERGIC membrane|integral component of ER-Golgi intermediate compartment membrane|integral component of endoplasmic reticulum-Golgi intermediate compartment membrane bhm 2015-03-16T15:57:36Z cellular_component owl:Class GO:0080089 biolink:NamedThing sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity Catalysis of the transfer of a sinapoyl group to a nitrogen atom on a sinapoyl spermidine molecule resulting in the formation of a disinapoyl spermidine derivative. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T03:27:55Z molecular_function owl:Class GO:1900489 biolink:NamedThing positive regulation of [2Fe-2S] cluster assembly Any process that activates or increases the frequency, rate or extent of [2Fe-2S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl activation of 2Fe-2S cluster assembly|upregulation of [2Fe-2S] cluster assembly|upregulation of [2Fe-2S] cluster biosynthetic process|up regulation of [2Fe-2S] cluster biosynthetic process|upregulation of 2Fe-2S cluster assembly|positive regulation of [2Fe-2S] cluster biosynthetic process|up-regulation of 2Fe-2S cluster assembly|up regulation of 2Fe-2S cluster assembly|up-regulation of [2Fe-2S] cluster assembly|activation of [2Fe-2S] cluster assembly|activation of [2Fe-2S] cluster biosynthetic process|up regulation of [2Fe-2S] cluster assembly|positive regulation of 2Fe-2S cluster assembly|up-regulation of [2Fe-2S] cluster biosynthetic process tt 2012-05-02T01:22:40Z biological_process owl:Class GO:0031991 biolink:NamedThing regulation of actomyosin contractile ring contraction Any process that modulates the frequency, rate or extent of contraction of the actomyosin ring involved in cytokinesis that takes place as part of a cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of contractile ring contraction involved in cytokinesis during cell cycle|regulation of contractile ring contraction involved in cell cycle cytokinesis|regulation of actomyosin contractile ring constriction https://github.com/geneontology/go-ontology/issues/21855 biological_process owl:Class GO:0006214 biolink:NamedThing thymidine catabolic process The chemical reactions and pathways resulting in the breakdown of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA. tmpzr1t_l9r_go_relaxed.owl thymidine catabolism|deoxyribosylthymine catabolic process|deoxyribosylthymine catabolism|thymidine breakdown|thymidine degradation GO:0006215 biological_process owl:Class GO:0046104 biolink:NamedThing thymidine metabolic process The chemical reactions and pathways involving thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA. tmpzr1t_l9r_go_relaxed.owl deoxyribosylthymine metabolic process|thymidine metabolism|deoxyribosylthymine metabolism biological_process owl:Class GO:0046278 biolink:NamedThing 3,4-dihydroxybenzoate metabolic process The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid). tmpzr1t_l9r_go_relaxed.owl protocatechuate metabolic process|protocatechuate metabolism biological_process owl:Class GO:1904460 biolink:NamedThing positive regulation of substance P secretion Any process that activates or increases the frequency, rate or extent of substance P secretion. tmpzr1t_l9r_go_relaxed.owl up regulation of substance P secretion|activation of substance P secretion|upregulation of substance P secretion|up-regulation of substance P secretion sl 2015-07-09T19:33:03Z biological_process owl:Class GO:0031568 biolink:NamedThing mitotic G1 cell size control checkpoint signaling A signal transduction process that contributes to a cell size control checkpoint during the G1/S transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic G1 cell size control checkpoint|signal transduction involved in mitotic cell cycle G1/S transition size control checkpoint|mitotic cell cycle G1/S transition size control checkpoint|G1 cell size control checkpoint signalling|G1 cell size control checkpoint|signal transduction involved in G1 cell size control checkpoint GO:0072450 biological_process owl:Class GO:0089714 biolink:NamedThing UDP-N-acetyl-D-mannosamine dehydrogenase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-mannosamine + 2 NAD+ + H2O = UDP-N-acetyl-alpha-D-mannosaminuronate + 2 NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.336|RHEA:25780 molecular_function owl:Class GO:0097576 biolink:NamedThing vacuole fusion Merging of two or more vacuoles, or of vacuoles and vesicles within a cell to form a single larger vacuole. tmpzr1t_l9r_go_relaxed.owl pr 2014-02-28T09:49:31Z biological_process owl:Class GO:0007033 biolink:NamedThing vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole. tmpzr1t_l9r_go_relaxed.owl vacuole biogenesis|vacuolar assembly|vacuole organization and biogenesis|vacuole organisation GO:0044086 biological_process owl:Class GO:0007175 biolink:NamedThing negative regulation of epidermal growth factor-activated receptor activity Any process that stops, prevents, or reduces the frequency, rate or extent of EGF-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl EGF receptor downregulation|negative regulation of EGFR activity|negative regulation of epidermal growth factor receptor activity|down-regulation of epidermal growth factor receptor activity|inhibition of epidermal growth factor receptor activity|negative regulation of EGF receptor activity|down regulation of epidermal growth factor receptor activity|downregulation of epidermal growth factor receptor activity GO:0007177 biological_process owl:Class GO:0034608 biolink:NamedThing vulval location Location, by the male, of his partner's vulva when backing along the ventral side of the hermaphrodite during mating. The male stops at the vulva, coordinates his movements to the hermaphrodite's, and positions his tail precisely over the vulva so that he may insert his spicules and ejaculate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060179 biolink:NamedThing male mating behavior The specific behavior of a male organism that is associated with reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048650 biolink:NamedThing caste determination, influence by environmental factors The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental cues. Individuals with distinct developmental fates perform different functions in a colony of social insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048651 biolink:NamedThing polyphenic determination, influence by environmental factors The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to environmental cues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099645 biolink:NamedThing neurotransmitter receptor localization to postsynaptic specialization membrane A process in which a neurotransmitter is transported to, or maintained in, a location within the membrane adjacent to a postsynaptic specialization (e.g. postsynaptic density). tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor localisation in postsynaptic specialization membrane biological_process owl:Class GO:0099633 biolink:NamedThing protein localization to postsynaptic specialization membrane A process in which a protein is transported to, or maintained in, a location within the membrane adjacent to a postsynaptic specialization (e.g. post synaptic density). tmpzr1t_l9r_go_relaxed.owl protein localisation in postsynaptic specialization membrane biological_process owl:Class GO:0033958 biolink:NamedThing DNA-deoxyinosine glycosylase activity Catalysis of the hydrolysis of DNA and polynucleotides, releasing free hypoxanthine. tmpzr1t_l9r_go_relaxed.owl DNA(hypoxanthine) glycohydrolase activity|hypoxanthine-DNA glycosylase activity|deoxyribonucleic acid glycosylase activity|DNA-deoxyinosine deoxyribohydrolase activity|DNA-deoxyinosine glycosidase activity MetaCyc:3.2.2.15-RXN|EC:3.2.2.15 molecular_function owl:Class GO:0046671 biolink:NamedThing negative regulation of retinal cell programmed cell death Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death that occurs in the retina. tmpzr1t_l9r_go_relaxed.owl down-regulation of retinal programmed cell death|inhibition of retinal programmed cell death|downregulation of retinal programmed cell death|down regulation of retinal programmed cell death|negative regulation of retinal programmed cell death biological_process owl:Class GO:0140250 biolink:NamedThing regulation protein catabolic process at synapse Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein at the synapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/204 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:34:56Z biological_process owl:Class GO:0009894 biolink:NamedThing regulation of catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances. tmpzr1t_l9r_go_relaxed.owl regulation of catabolism|regulation of degradation|regulation of breakdown biological_process owl:Class GO:1902465 biolink:NamedThing negative regulation of histone H3-K27 trimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K27 trimethylation. tmpzr1t_l9r_go_relaxed.owl downregulation of histone H3-K27 trimethylation|down regulation of histone H3-K27 trimethylation|inhibition of histone H3-K27 trimethylation|down-regulation of histone H3-K27 trimethylation krc 2013-10-22T14:59:04Z biological_process owl:Class GO:0061086 biolink:NamedThing negative regulation of histone H3-K27 methylation Any process that decreases the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:23:52Z biological_process owl:Class GO:0050783 biolink:NamedThing cocaine metabolic process The chemical reactions and pathways involving cocaine, an alkaloid obtained from the dried leaves of the shrub Erythroxylon coca. It is a cerebral stimulant and narcotic. tmpzr1t_l9r_go_relaxed.owl cocaine metabolism biological_process owl:Class GO:1905227 biolink:NamedThing negative regulation of adhesion of symbiont to host epithelial cell Any process that stops, prevents or reduces the frequency, rate or extent of adhesion of symbiont to host epithelial cell. tmpzr1t_l9r_go_relaxed.owl inhibition of adhesion of symbiont to host epithelial cell|downregulation of adhesion of symbiont to host epithelial cell|down-regulation of adhesion of symbiont to host epithelial cell|down regulation of adhesion of symbiont to host epithelial cell pga 2016-06-07T13:15:16Z biological_process owl:Class GO:0048147 biolink:NamedThing negative regulation of fibroblast proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells. tmpzr1t_l9r_go_relaxed.owl down-regulation of fibroblast proliferation|down regulation of fibroblast proliferation|inhibition of fibroblast proliferation|downregulation of fibroblast proliferation biological_process owl:Class GO:1903780 biolink:NamedThing negative regulation of cardiac conduction Any process that stops, prevents or reduces the frequency, rate or extent of cardiac conduction. tmpzr1t_l9r_go_relaxed.owl inhibition of cardiac conduction|downregulation of cardiac conduction|down regulation of cardiac conduction|down-regulation of cardiac conduction rph 2015-01-07T13:20:20Z biological_process owl:Class GO:2001280 biolink:NamedThing positive regulation of unsaturated fatty acid biosynthetic process Any process that activates or increases the frequency, rate or extent of unsaturated fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of unsaturated fatty acid anabolism|positive regulation of polyunsaturated fatty acid biosynthesis|positive regulation of unsaturated fatty acid biosynthesis|positive regulation of unsaturated fatty acid formation|positive regulation of fatty acid desaturation|positive regulation of unsaturated fatty acid synthesis dgf 2011-12-14T07:48:33Z biological_process owl:Class GO:0003910 biolink:NamedThing DNA ligase (ATP) activity Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). tmpzr1t_l9r_go_relaxed.owl DNA repair enzyme activity|deoxyribonucleic joinase|deoxyribonucleate ligase|deoxyribonucleic repair enzyme|deoxyribonucleic-joining enzyme|DNA joinase activity|deoxyribonucleic acid-joining enzyme|polydeoxyribonucleotide synthase (ATP) activity|deoxyribonucleic acid repair enzyme|poly(deoxyribonucleotide):poly(deoxyribonucleotide) ligase (AMP-forming)|deoxyribonucleic acid joinase|polynucleotide ligase (ATP) activity|polynucleotide ligase|sealase activity|deoxyribonucleic acid ligase|DNA-joining enzyme|deoxyribonucleic ligase EC:6.5.1.1|MetaCyc:DNA-LIGASE-ATP-RXN molecular_function owl:Class GO:0003909 biolink:NamedThing DNA ligase activity Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5690997|Reactome:R-HSA-5651805|Reactome:R-HSA-175258|Reactome:R-HSA-73931|Reactome:R-HSA-174456|Reactome:R-HSA-5693604|Reactome:R-HSA-5649734|Reactome:R-HSA-5651789|Reactome:R-HSA-6782227|Reactome:R-HSA-5358592|Reactome:R-HSA-5687675|Reactome:R-HSA-69173 molecular_function owl:Class GO:0046986 biolink:NamedThing negative regulation of hemoglobin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. tmpzr1t_l9r_go_relaxed.owl negative regulation of hemoglobin anabolism|negative regulation of hemoglobin biosynthesis|down regulation of hemoglobin biosynthetic process|down-regulation of hemoglobin biosynthetic process|inhibition of hemoglobin biosynthetic process|downregulation of hemoglobin biosynthetic process|negative regulation of haemoglobin biosynthetic process|negative regulation of haemoglobin biosynthesis|negative regulation of hemoglobin synthesis|negative regulation of hemoglobin formation biological_process owl:Class GO:0002398 biolink:NamedThing MHC class Ib protein complex assembly The aggregation, arrangement and bonding together of a set of components to form an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002396 biolink:NamedThing MHC protein complex assembly The aggregation, arrangement and bonding together of a set of components to form an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032918 biolink:NamedThing spermidine acetylation The modification of spermidine by addition of acetyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008216 biolink:NamedThing spermidine metabolic process The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl spermidine metabolism biological_process owl:Class GO:0006658 biolink:NamedThing phosphatidylserine metabolic process The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine metabolism biological_process owl:Class GO:0046869 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide The incorporation of iron into a 2Fe-2S iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-aspartato diiron disulphide RESID:AA0331 biological_process owl:Class GO:0044665 biolink:NamedThing MLL1/2 complex A protein complex that can methylate lysine-4 of histone H3, and which contains either of the protein subunits MLL1 or MLL2 in human, or equivalent in other species. tmpzr1t_l9r_go_relaxed.owl Trx-containing complex jl 2012-08-07T14:44:12Z cellular_component owl:Class GO:0140279 biolink:NamedThing regulation of mitotic division septum assembly Any process that modulates the frequency, rate or extent of mitotic division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of formation of division septum involved in mitotic cell cycle|regulation of septin assembly and septum formation involved in mitotic cell cycle|regulation of division septum formation involved in mitotic cell cycle|regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle pg 2018-10-08T09:55:51Z biological_process owl:Class GO:0015926 biolink:NamedThing glucosidase activity Catalysis of the hydrolysis of glucosyl compounds, substances containing a group derived from a cyclic form of glucose or a glucose derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019961 biolink:NamedThing interferon binding Binding to an interferon, a protein produced by the immune systems of many animals in response to a challenge by a foreign agent. tmpzr1t_l9r_go_relaxed.owl IFN binding molecular_function owl:Class GO:0030451 biolink:NamedThing regulation of complement activation, alternative pathway Any process that modulates the frequency, rate or extent of the alternative pathway of complement activation. tmpzr1t_l9r_go_relaxed.owl regulation of complement cascade, alternative pathway biological_process owl:Class GO:1990585 biolink:NamedThing hydroxyproline O-arabinosyltransferase activity Catalysis of the reaction: UDP-beta-L-arabinofuranose + a [protein]-trans-4-hydroxy-L-proline <=> a protein-O-(beta-L-arabinofuranose)-trans-4-hydroxy-L-proline + UDP + H+. tmpzr1t_l9r_go_relaxed.owl HPAT tb 2014-12-12T18:22:20Z molecular_function owl:Class GO:1901768 biolink:NamedThing carbapenem catabolic process The chemical reactions and pathways resulting in the breakdown of carbapenem. tmpzr1t_l9r_go_relaxed.owl carbapenem breakdown|carbapenem degradation|carbapenem catabolism yaf 2013-01-15T10:09:02Z biological_process owl:Class GO:1901767 biolink:NamedThing carbapenem metabolic process The chemical reactions and pathways involving carbapenem. tmpzr1t_l9r_go_relaxed.owl carbapenem metabolism yaf 2013-01-15T10:08:57Z biological_process owl:Class GO:1900340 biolink:NamedThing negative regulation of methane biosynthetic process from formic acid Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from formic acid. tmpzr1t_l9r_go_relaxed.owl down regulation of methane biosynthetic process from formic acid|down-regulation of methane biosynthetic process from formic acid|inhibition of methane biosynthetic process from formic acid|downregulation of methane biosynthetic process from formic acid tt 2012-04-06T02:05:03Z biological_process owl:Class GO:0036500 biolink:NamedThing ATF6-mediated unfolded protein response A series of molecular signals mediated by the endoplasmic reticulum membrane stress sensor ATF6 (activating transcription factor 6). Begins with activation of ATF6 in response to endoplasmic reticulum (ER) stress, and ends with regulation of a downstream cellular process, e.g. transcription. Under conditions of endoplasmic reticulum stress, ATF6 translocates to the Golgi where it is processed by proteases to release a cytoplasmic domain (ATF6f), which operates as a transcriptional activator of many genes required to restore folding capacity. tmpzr1t_l9r_go_relaxed.owl ATF6 branch of UPR|ATF6-beta UPR branch|activating transcription factor 6 signaling in unfolded protein response|endoplasmic reticulum unfolded protein response; ATF6 signaling|ATF6-alpha UPR branch|UPR signaling by ATF6 stress sensor|ATF6 signaling in response to endoplasmic reticulum stress|ATF6 signal transduction pathway bf 2015-02-05T13:18:58Z biological_process owl:Class GO:0060278 biolink:NamedThing regulation of ovulation Any process that modulates the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903954 biolink:NamedThing positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization Any process that activates or increases the frequency, rate or extent of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl activation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|upregulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|up-regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|positive regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|up-regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|upregulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|activation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|up regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|up regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization nc 2015-02-24T10:32:24Z biological_process owl:Class GO:0051796 biolink:NamedThing negative regulation of timing of catagen Any process that stops, prevents, or reduces the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl downregulation of catagen|down regulation of catagen|inhibition of catagen|down-regulation of catagen|negative regulation of catagen biological_process owl:Class GO:0032049 biolink:NamedThing cardiolipin biosynthetic process The chemical reactions and pathways resulting in the formation of cardiolipin, 1,3-bis(3-phosphatidyl)glycerol. tmpzr1t_l9r_go_relaxed.owl diphosphatidylglycerol biosynthesis|diphosphatidylglycerol biosynthetic process MetaCyc:PWY-5269 biological_process owl:Class GO:0062212 biolink:NamedThing regulation of mitotic DNA replication initiation from early origin Any process that modulates the frequency, rate or extent of firing from an early origin of replication involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl regulation of early replication origin firing dph 2020-02-21T19:21:44Z biological_process owl:Class GO:0031357 biolink:NamedThing integral component of chloroplast inner membrane The component of the chloroplast inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to chloroplast inner membrane cellular_component owl:Class GO:0031353 biolink:NamedThing integral component of plastid inner membrane The component of the plastid inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to plastid inner membrane cellular_component owl:Class GO:1903661 biolink:NamedThing positive regulation of complement-dependent cytotoxicity Any process that activates or increases the frequency, rate or extent of complement-dependent cytotoxicity. tmpzr1t_l9r_go_relaxed.owl up regulation of complement-dependent cytotoxicity|activation of complement-dependent cytotoxicity|upregulation of complement-dependent cytotoxicity|up-regulation of complement-dependent cytotoxicity jl 2014-11-25T15:04:11Z biological_process owl:Class GO:0031343 biolink:NamedThing positive regulation of cell killing Any process that activates or increases the frequency, rate or extent of cell killing. tmpzr1t_l9r_go_relaxed.owl upregulation of cell killing|up-regulation of cell killing|stimulation of cell killing|up regulation of cell killing|activation of cell killing biological_process owl:Class GO:0070720 biolink:NamedThing Grb2-SHP-2 complex A protein complex that contains the receptor adaptor proteins Grb2 and SHP-2, and is involved signaling via the PDGFR signaling pathway. tmpzr1t_l9r_go_relaxed.owl GRB2-SHP-2 complex, PDGF stimulated mah 2009-06-10T05:08:21Z cellular_component owl:Class GO:1902239 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl down-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|inhibition of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|down regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|downregulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator pr 2013-06-19T14:00:39Z biological_process owl:Class GO:0004583 biolink:NamedThing dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity Catalysis of the transfer of an alpha-D-glucosyl residue from dolichyl-phosphate D-glucose into a membrane lipid-linked oligosaccharide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-4724291|MetaCyc:RXN-5472|Reactome:R-HSA-446189|Reactome:R-HSA-446194|Reactome:R-HSA-4724330|Reactome:R-HSA-446202 molecular_function owl:Class GO:0046527 biolink:NamedThing glucosyltransferase activity Catalysis of the transfer of a glucosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0089721 biolink:NamedThing phosphoenolpyruvate transmembrane transporter activity Enables the transfer of a phosphoenolpyruvate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015605 biolink:NamedThing organophosphate ester transmembrane transporter activity Enables the transfer of organophosphate esters from one side of a membrane to the other. Organophosphate esters are small organic molecules containing phosphate ester bonds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034224 biolink:NamedThing cellular response to zinc ion starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of zinc ions. tmpzr1t_l9r_go_relaxed.owl cellular response to zinc ion limitation|cellular response to zinc starvation biological_process owl:Class GO:0120127 biolink:NamedThing response to zinc ion starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of zinc ion. tmpzr1t_l9r_go_relaxed.owl krc 2018-02-12T19:57:02Z biological_process owl:Class GO:0004033 biolink:NamedThing aldo-keto reductase (NADP) activity Catalysis of the reaction: an alcohol + NADP+ = an aldehyde or a ketone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl aldo-keto reductase (NADP+) activity|NADPH-dependent aldo-keto reductase activity|aldo-keto reductase activity|alcohol dehydrogenase (NADP+) activity Reactome:R-HSA-193755|Reactome:R-HSA-5423637|Reactome:R-HSA-9027600|Reactome:R-HSA-2855252|Reactome:R-HSA-192033|Reactome:R-HSA-193824|Reactome:R-HSA-193746|Reactome:R-HSA-9027598|Reactome:R-HSA-193781|Reactome:R-HSA-198845|Reactome:R-HSA-193821|Reactome:R-HSA-192067|Reactome:R-HSA-5692232|Reactome:R-HSA-193800|Reactome:R-HSA-193841|Reactome:R-HSA-9027562|Reactome:R-HSA-193758|Reactome:R-HSA-9027531|Reactome:R-HSA-192160|Reactome:R-HSA-192036 molecular_function owl:Class GO:0045704 biolink:NamedThing regulation of salivary gland boundary specification Any process that modulates the frequency, rate or extent of salivary gland determination. tmpzr1t_l9r_go_relaxed.owl regulation of salivary gland determination biological_process owl:Class GO:0033531 biolink:NamedThing stachyose metabolic process The chemical reactions and pathways involving stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl stachyose metabolism biological_process owl:Class GO:0009311 biolink:NamedThing oligosaccharide metabolic process The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl multicellular organismal oligosaccharide metabolic process|oligosaccharide metabolism GO:0051690 biological_process owl:Class GO:0050368 biolink:NamedThing tyrosine 2,3-aminomutase activity Catalysis of the reaction: L-tyrosine = 3-amino-3-(4-hydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl tyrosine alpha,beta-mutase activity|L-tyrosine 2,3-aminomutase activity MetaCyc:TYROSINE-23-AMINOMUTASE-RXN|RHEA:15781|EC:5.4.3.6|KEGG_REACTION:R00739 molecular_function owl:Class GO:0016869 biolink:NamedThing intramolecular transferase activity, transferring amino groups Catalysis of the transfer of an amino group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl EC:5.4.3.- molecular_function owl:Class GO:2001208 biolink:NamedThing negative regulation of transcription elongation by RNA polymerase I Any process that stops, prevents or reduces the frequency, rate or extent of transcription elongation mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription elongation from RNA polymerase I promoter|negative regulation of RNA elongation from Pol I promoter se 2011-11-11T10:46:36Z biological_process owl:Class GO:2001207 biolink:NamedThing regulation of transcription elongation from RNA polymerase I promoter Any process that modulates the frequency, rate or extent of transcription elongation from RNA polymerase I promoter. tmpzr1t_l9r_go_relaxed.owl regulation of RNA elongation from Pol I promoter se 2011-11-11T10:46:28Z biological_process owl:Class GO:0006448 biolink:NamedThing regulation of translational elongation Any process that modulates the frequency, rate, extent or accuracy of translational elongation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102184 biolink:NamedThing cycloartenol 4alpha-methyl oxidase activity Catalysis of the reaction: cycloartenol + NADH + O2 + H+ <=> 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11946 molecular_function owl:Class GO:0035387 biolink:NamedThing negative regulation of Roundabout signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the Roundabout signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of Roundabout signalling pathway bf 2010-03-18T02:40:00Z biological_process owl:Class GO:0036353 biolink:NamedThing histone H2A-K119 monoubiquitination The modification of histone H2A by addition of a single ubiquitin group to lysine-119 (H2A- K119) in metazoans, and at the equivalent residue in other organisms. tmpzr1t_l9r_go_relaxed.owl histone H2A monoubiquitination (H2A-K119) bf 2012-09-19T11:52:25Z biological_process owl:Class GO:0035518 biolink:NamedThing histone H2A monoubiquitination The modification of histone H2A by addition of a single ubiquitin group. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-04T04:22:09Z biological_process owl:Class GO:2000290 biolink:NamedThing regulation of myotome development Any process that modulates the frequency, rate or extent of myotome development. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-20T10:22:05Z biological_process owl:Class GO:0015172 biolink:NamedThing acidic amino acid transmembrane transporter activity Enables the transfer of acidic amino acids from one side of a membrane to the other. Acidic amino acids have side chains with a negative charge at pH 7.3. tmpzr1t_l9r_go_relaxed.owl acidic amino acid transporter activity Reactome:R-HSA-372448 molecular_function owl:Class GO:1905300 biolink:NamedThing positive regulation of intestinal epithelial cell development Any process that activates or increases the frequency, rate or extent of intestinal epithelial cell development. tmpzr1t_l9r_go_relaxed.owl activation of intestinal epithelial cell development|up-regulation of intestinal epithelial cell development|upregulation of intestinal epithelial cell development|up regulation of intestinal epithelial cell development rph 2016-06-30T11:41:02Z biological_process owl:Class GO:1900106 biolink:NamedThing positive regulation of hyaluranon cable assembly Any process that activates or increases the frequency, rate or extent of hyaluranon cable assembly. tmpzr1t_l9r_go_relaxed.owl activation of hyaluranon cable assembly|up-regulation of HA cable assembly|activation of HA cable assembly|upregulation of hyaluranon cable assembly|upregulation of HA cable assembly|up regulation of hyaluranon cable assembly|positive regulation of HA cable assembly|up regulation of HA cable assembly|up-regulation of hyaluranon cable assembly yaf 2012-02-16T01:00:54Z biological_process owl:Class GO:0044089 biolink:NamedThing positive regulation of cellular component biogenesis Any process that activates or increases the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043458 biolink:NamedThing ethanol biosynthetic process involved in glucose fermentation to ethanol The chemical reactions and pathways resulting in the formation of ethanol, CH3-CH2-OH, as part of the process of glucose catabolism to ethanol, CO2 and ATP. tmpzr1t_l9r_go_relaxed.owl ethanol synthesis during fermentation|ethanol anabolism during fermentation|ethanol formation during fermentation biological_process owl:Class GO:0006115 biolink:NamedThing ethanol biosynthetic process The chemical reactions and pathways resulting in the formation of ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation. tmpzr1t_l9r_go_relaxed.owl ethanol biosynthesis|ethanol formation|ethanol anabolism|ethanol synthesis biological_process owl:Class GO:2000756 biolink:NamedThing regulation of peptidyl-lysine acetylation Any process that modulates the frequency, rate or extent of peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-16T09:51:26Z biological_process owl:Class GO:0009663 biolink:NamedThing plasmodesma organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasmodesma, a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. tmpzr1t_l9r_go_relaxed.owl plasmodesma organization and biogenesis|plasmodesma organisation|plasmodesmata organization and biogenesis biological_process owl:Class GO:0045216 biolink:NamedThing cell-cell junction organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells. tmpzr1t_l9r_go_relaxed.owl cell-cell junction organisation|cell-cell junction assembly and maintenance|cell-cell junction biogenesis|intercellular junction assembly and maintenance biological_process owl:Class GO:0006532 biolink:NamedThing aspartate biosynthetic process The chemical reactions and pathways resulting in the formation of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid. tmpzr1t_l9r_go_relaxed.owl aspartate anabolism|aspartate biosynthesis|aspartate formation|aspartate synthesis biological_process owl:Class GO:0051712 biolink:NamedThing positive regulation of killing of cells of other organism Any process that activates or increases the frequency, rate or extent of the killing by an organism of cells in another organism. tmpzr1t_l9r_go_relaxed.owl upregulation of killing of cells of another organism|positive regulation by organism of programmed cell death in other organism involved in symbiotic interaction|up-regulation of killing of cells of another organism|positive regulation by organism of apoptotic process in other organism involved in symbiotic interaction|enhancement of other organism programmed cell death by organism|stimulation of killing of cells of another organism|induction by organism of apoptosis in other organism involved in symbiotic interaction|positive regulation by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction|activation by organism of apoptotic programmed cell death in other organism during symbiotic interaction|induction by organism of apoptosis in other organism during symbiotic interaction|activation of killing of cells of another organism|up regulation of killing of cells of another organism https://github.com/geneontology/go-ontology/issues/20287 GO:0052501|GO:0052388|GO:0052518|GO:0052330|GO:0052529 biological_process owl:Class GO:0044598 biolink:NamedThing doxorubicin metabolic process The chemical reactions and pathways involving doxorubicin, an anthracycline antibiotic, used in cancer chemotherapy. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-01T03:30:21Z biological_process owl:Class GO:1902146 biolink:NamedThing positive regulation of response to cell cycle checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to cell cycle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of G1/S transition checkpoint effector process|up-regulation of response to signal involved in cell cycle checkpoint|positive regulation of response to signal involved in cell cycle checkpoint|up-regulation of response to signal involved in G2/M transition checkpoint|upregulation of cell cycle checkpoint effector process|activation of response to signal involved in G1/S transition checkpoint|positive regulation of cell cycle checkpoint effector process|up regulation of response to signal involved in G2/M transition checkpoint|up regulation of G2/M transition checkpoint effector process|up regulation of response to signal involved in cell cycle checkpoint|activation of cell cycle checkpoint effector process|positive regulation of G2/M transition checkpoint effector process|up-regulation of response to G2/M transition checkpoint signaling|up regulation of G1/S transition checkpoint effector process|activation of response to cell cycle checkpoint signaling|up regulation of response to signal involved in G1/S transition checkpoint|upregulation of response to signal involved in G2/M transition checkpoint|activation of response to signal involved in cell cycle checkpoint|upregulation of G1/S transition checkpoint effector process|up-regulation of response to cell cycle checkpoint signaling|activation of response to signal involved in G2/M transition checkpoint|upregulation of response to signal involved in G1/S transition checkpoint|activation of G1/S transition checkpoint effector process|up-regulation of response to signal involved in G1/S transition checkpoint|positive regulation of response to signal involved in G1/S transition checkpoint|positive regulation of response to G2/M transition checkpoint signaling|upregulation of G2/M transition checkpoint effector process|up regulation of response to cell cycle checkpoint signaling|positive regulation of response to signal involved in G2/M transition checkpoint|up-regulation of cell cycle checkpoint effector process|upregulation of response to cell cycle checkpoint signaling|up-regulation of G1/S transition checkpoint effector process|upregulation of response to G2/M transition checkpoint signaling|up-regulation of G2/M transition checkpoint effector process|activation of response to G1/S transition checkpoint signaling|up-regulation of response to G1/S transition checkpoint signaling|upregulation of response to signal involved in cell cycle checkpoint|activation of G2/M transition checkpoint effector process|positive regulation of response to G1/S transition checkpoint signaling|upregulation of response to G1/S transition checkpoint signaling|activation of response to G2/M transition checkpoint signaling|up regulation of response to G1/S transition checkpoint signaling|up regulation of cell cycle checkpoint effector process|up regulation of response to G2/M transition checkpoint signaling jl 2013-05-21T15:43:45Z biological_process owl:Class GO:1902145 biolink:NamedThing regulation of response to cell cycle checkpoint signaling Any process that modulates the frequency, rate or extent of response to cell cycle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of response to signal involved in cell cycle checkpoint|regulation of response to signal involved in G2/M transition checkpoint|regulation of response to signal involved in G1/S transition checkpoint|regulation of response to G1/S transition checkpoint signaling|regulation of cell cycle checkpoint effector process|regulation of G1/S transition checkpoint effector process|regulation of response to G2/M transition checkpoint signaling|regulation of G2/M transition checkpoint effector process jl 2013-05-21T15:43:40Z biological_process owl:Class GO:0120176 biolink:NamedThing positive regulation of torso signaling pathway Any process that activates or increases the frequency, rate or extent of the torso signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-06-07T16:52:52Z biological_process owl:Class GO:0051599 biolink:NamedThing response to hydrostatic pressure Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. tmpzr1t_l9r_go_relaxed.owl response to biomechanical stress|response to static fluid pressure biological_process owl:Class GO:0009415 biolink:NamedThing response to water Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. tmpzr1t_l9r_go_relaxed.owl response to water stimulus biological_process owl:Class GO:1903580 biolink:NamedThing positive regulation of ATP metabolic process Any process that activates or increases the frequency, rate or extent of ATP metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of ATP metabolism|upregulation of ATP metabolism|up-regulation of ATP metabolism|activation of ATP metabolic process|up regulation of ATP metabolic process|upregulation of ATP metabolic process|up-regulation of ATP metabolic process|positive regulation of ATP metabolism|activation of ATP metabolism sl 2014-10-30T19:04:42Z biological_process owl:Class GO:0097115 biolink:NamedThing neurexin clustering involved in presynaptic membrane assembly The receptor clustering process involved in assembly of the presynaptic membrane in which neurexins are localized to distinct domains in the cell membrane. Neurexins are synaptic cell surface proteins which act as cell recognition molecules at nerve terminals. tmpzr1t_l9r_go_relaxed.owl presynaptic neurexin clustering|Nrxn clustering|neurexin clustering pr 2011-07-31T05:40:00Z biological_process owl:Class GO:0043113 biolink:NamedThing receptor clustering The receptor metabolic process that results in grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042046 biolink:NamedThing W-molybdopterin cofactor metabolic process The chemical reactions and pathways involving the W-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear tungsten ion (W) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Moco metabolic process|Moco metabolism|W-molybdopterin cofactor metabolism biological_process owl:Class GO:0035966 biolink:NamedThing response to topologically incorrect protein Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. tmpzr1t_l9r_go_relaxed.owl response to misfolded or unfolded protein bf 2011-08-03T11:43:12Z biological_process owl:Class GO:0038190 biolink:NamedThing VEGF-activated neuropilin signaling pathway A series of molecular signals initiated by the binding of vascular endothelial growth factor (VEGF) to a neuropilin protein on the surface of a target cell, followed by transmission of the signal, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl vascular endothelial growth factor-activated neuropilin signaling pathway|VEGF-Npn-1 signaling bf 2013-08-01T16:06:49Z biological_process owl:Class GO:0038189 biolink:NamedThing neuropilin signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a neuropilin protein on the surface of a target cell, followed by transmission of the signal, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl Npn signaling bf 2013-08-01T16:02:10Z biological_process owl:Class GO:2001069 biolink:NamedThing glycogen binding Binding to glycogen. tmpzr1t_l9r_go_relaxed.owl animal starch binding|liver starch binding jl 2011-09-14T12:01:06Z molecular_function owl:Class GO:0003245 biolink:NamedThing cardiac muscle tissue growth involved in heart morphogenesis The developmental growth of cardiac muscle tissue that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:44:21Z biological_process owl:Class GO:2001151 biolink:NamedThing regulation of renal water transport Any process that modulates the frequency, rate or extent of renal water transport. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-24T11:37:51Z biological_process owl:Class GO:1900132 biolink:NamedThing positive regulation of lipid binding Any process that activates or increases the frequency, rate or extent of lipid binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of lipid binding|activation of lipid binding|up regulation of lipid binding|upregulation of lipid binding pm 2012-02-23T04:05:11Z biological_process owl:Class GO:1904131 biolink:NamedThing negative regulation of convergent extension involved in neural plate elongation Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in neural plate elongation. tmpzr1t_l9r_go_relaxed.owl inhibition of convergent extension involved in neural plate elongation|down regulation of convergent extension involved in neural plate elongation|downregulation of convergent extension involved in neural plate elongation|down-regulation of convergent extension involved in neural plate elongation dph 2015-04-10T21:13:27Z biological_process owl:Class GO:1904104 biolink:NamedThing negative regulation of convergent extension involved in gastrulation Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in gastrulation. tmpzr1t_l9r_go_relaxed.owl inhibition of convergent extension involved in gastrulation|downregulation of convergent extension involved in gastrulation|down-regulation of convergent extension involved in gastrulation|down regulation of convergent extension involved in gastrulation dph 2015-04-01T11:17:12Z biological_process owl:Class GO:0033809 biolink:NamedThing anthocyanin 6''-O-malonyltransferase activity Catalysis of the reaction: malonyl-CoA + an anthocyanidin 3-O-beta-D-glucoside = CoA + an anthocyanidin 3-O-(6-O-malonyl-beta-D-glucoside). tmpzr1t_l9r_go_relaxed.owl malonyl-coenzymeA:anthocyanidin-3-O-beta-D-glucoside 6''-O-malonyltransferase activity|malonyl-CoA:anthocyanidin-3-O-beta-D-glucoside 6''-O-malonyltransferase activity|Dv3MaT|3MaT RHEA:16025|EC:2.3.1.171|MetaCyc:2.3.1.171-RXN molecular_function owl:Class GO:0043729 biolink:NamedThing 2-amino-5-formylamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one formate-lyase activity Catalysis of the reaction: 2-amino-5-formylamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one + H2O = 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one + formate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016829 biolink:NamedThing lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. tmpzr1t_l9r_go_relaxed.owl other lyase activity Reactome:R-HSA-6782895|Reactome:R-HSA-5696408|EC:4.-.-.- molecular_function owl:Class GO:0006048 biolink:NamedThing UDP-N-acetylglucosamine biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine anabolism|UDP-N-acetylglucosamine synthesis|UDP-GlcNAc biosynthetic process|UDP-N-acetylglucosamine formation|UDP-N-acetylglucosamine biosynthesis|UDP-GlcNAc biosynthesis MetaCyc:UDPNAGSYN-PWY biological_process owl:Class GO:0050326 biolink:NamedThing taxifolin 8-monooxygenase activity Catalysis of the reaction: taxifolin + NAD(P)H + H+ + O2 = 2,3-dihydrogossypetin + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl taxifolin hydroxylase activity|taxifolin,NAD(P)H:oxygen oxidoreductase (8-hydroxylating) MetaCyc:TAXIFOLIN-8-MONOOXYGENASE-RXN|EC:1.14.13.19 molecular_function owl:Class GO:1901787 biolink:NamedThing benzoyl-CoA metabolic process The chemical reactions and pathways involving benzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA metabolism yaf 2013-01-16T11:13:54Z biological_process owl:Class GO:0006746 biolink:NamedThing FADH2 metabolic process The chemical reactions and pathways involving the reduced form of flavin adenine dinucleotide. tmpzr1t_l9r_go_relaxed.owl reduced flavin adenine dinucleotide metabolic process|FADH2 metabolism biological_process owl:Class GO:0072387 biolink:NamedThing flavin adenine dinucleotide metabolic process The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl flavin adenine dinucleotide metabolism|flavin-adenine dinucleotide metabolic process|FAD or FADH2 metabolic process mah 2010-12-02T04:21:43Z biological_process owl:Class GO:0034468 biolink:NamedThing glycosome lumen The volume enclosed by the membrane of a glycosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005782 biolink:NamedThing peroxisomal matrix The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase. tmpzr1t_l9r_go_relaxed.owl peroxisomal lumen GO:0031909 cellular_component owl:Class GO:0047283 biolink:NamedThing dolichyl-phosphate D-xylosyltransferase activity Catalysis of the reaction: dolichol-phosphate + UDP-D-xylose = dolichyl D-xylosyl phosphate + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose:dolichyl-phosphate D-xylosyltransferase activity MetaCyc:2.4.2.32-RXN|RHEA:15361|EC:2.4.2.32 molecular_function owl:Class GO:0051589 biolink:NamedThing negative regulation of neurotransmitter transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of neurotransmitter transport|down regulation of neurotransmitter transport|downregulation of neurotransmitter transport|inhibition of neurotransmitter transport biological_process owl:Class GO:0098893 biolink:NamedThing extrinsic component of postsynaptic endocytic zone The component of the postsynaptic endocytic zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903533 biolink:NamedThing regulation of protein targeting Any process that modulates the frequency, rate or extent of protein targeting. tmpzr1t_l9r_go_relaxed.owl regulation of nascent polypeptide association|regulation of protein sorting along secretory pathway al 2014-10-08T14:49:03Z biological_process owl:Class GO:0001069 biolink:NamedThing regulatory region RNA binding Binding to a RNA region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair. tmpzr1t_l9r_go_relaxed.owl krc 2010-10-21T04:17:01Z molecular_function owl:Class GO:0001067 biolink:NamedThing transcription regulatory region nucleic acid binding Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair. tmpzr1t_l9r_go_relaxed.owl regulatory region nucleic acid binding https://github.com/geneontology/go-ontology/issues/20791 krc 2010-10-21T04:08:56Z molecular_function owl:Class GO:0047175 biolink:NamedThing galactosylacylglycerol O-acyltransferase activity Catalysis of the reaction: sn-3-D-galactosyl-sn-2-acylglycerol + acyl-[acyl-carrier protein] = D-galactosyldiacylglycerol + [acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl acyl-acyl-carrier protein: lysomonogalactosyldiacylglycerol acyltransferase activity|acyl-ACP:lyso-MGDG acyltransferase activity|acyl-acyl-carrier-protein:D-galactosylacylglycerol O-acyltransferase activity EC:2.3.1.141|MetaCyc:2.3.1.141-RXN|RHEA:17057 molecular_function owl:Class GO:1902414 biolink:NamedThing protein localization to cell junction A process in which a protein is transported to, or maintained in, a location within a cell junction. tmpzr1t_l9r_go_relaxed.owl protein localization in cell junction|protein localisation in cell junction|protein localisation to cell junction tb 2013-09-13T16:55:57Z biological_process owl:Class GO:0090287 biolink:NamedThing regulation of cellular response to growth factor stimulus Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-18T03:01:25Z biological_process owl:Class GO:0008732 biolink:NamedThing L-allo-threonine aldolase activity Catalysis of the reaction: L-allo-threonine = glycine + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl LtaA|L-allo-threonine acetaldehyde-lyase activity RHEA:26209|MetaCyc:LTAA-RXN|EC:4.1.2.49 molecular_function owl:Class GO:0004793 biolink:NamedThing threonine aldolase activity Catalysis of the reaction: L-threonine = glycine + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl L-threonine aldolase activity|L-threonine acetaldehyde-lyase (glycine-forming)|L-threonine acetaldehyde-lyase activity RHEA:19625|MetaCyc:THREONINE-ALDOLASE-RXN|EC:4.1.2.5 molecular_function owl:Class GO:1901031 biolink:NamedThing regulation of response to reactive oxygen species Any process that modulates the frequency, rate or extent of response to reactive oxygen species. tmpzr1t_l9r_go_relaxed.owl regulation of response to ROS|regulation of response to reactive oxidative species|regulation of response to ROI|regulation of response to active oxygen species|regulation of response to reactive oxygen intermediate|regulation of response to AOS kmv 2012-06-20T07:47:06Z biological_process owl:Class GO:1902882 biolink:NamedThing regulation of response to oxidative stress Any process that modulates the frequency, rate or extent of response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl kmv 2014-04-03T20:29:52Z biological_process owl:Class GO:0060763 biolink:NamedThing mammary duct terminal end bud growth The morphogenetic growth of the large, club-shaped terminal end of a mammary gland duct during prepubertal growth and during puberty. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-06T07:33:50Z biological_process owl:Class GO:0009740 biolink:NamedThing gibberellic acid mediated signaling pathway A series of molecular signals mediated by the detection of gibberellic acid. tmpzr1t_l9r_go_relaxed.owl gibberellic acid signaling|GA-signaling|gibberellic acid mediated signalling biological_process owl:Class GO:0010476 biolink:NamedThing gibberellin mediated signaling pathway The series of molecular signals generated as a consequence of gibberellin stimulus. tmpzr1t_l9r_go_relaxed.owl gibberellin-mediated signalling biological_process owl:Class GO:0002706 biolink:NamedThing regulation of lymphocyte mediated immunity Any process that modulates the frequency, rate, or extent of lymphocyte mediated immunity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031721 biolink:NamedThing hemoglobin alpha binding Binding to a hemoglobin alpha chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030492 biolink:NamedThing hemoglobin binding Binding to hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. tmpzr1t_l9r_go_relaxed.owl globin binding|haemoglobin binding molecular_function owl:Class GO:1903478 biolink:NamedThing actin filament bundle convergence involved in mitotic contractile ring assembly Any actin filament bundle convergence that is involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl actin filament bundle convergence involved in actomyosin contractile ring assembly involved in cytokinesis after mitosis|actin filament bundle convergence involved in mitotic actomyosin contractile ring assembly|actin filament bundle convergence involved in cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|actin filament bundle convergence involved in contractile ring assembly involved in mitotic cytokinesis vw 2014-09-23T15:03:11Z biological_process owl:Class GO:0005640 biolink:NamedThing nuclear outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes. tmpzr1t_l9r_go_relaxed.owl perinuclear membrane|nucleus outer envelope NIF_Subcellular:sao1617136075 cellular_component owl:Class GO:0031968 biolink:NamedThing organelle outer membrane The outer, i.e. cytoplasm-facing in a cellular organelle, lipid bilayer of an organelle envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006231 biolink:NamedThing dTMP biosynthetic process The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dTMP biosynthesis|dTMP formation|dTMP synthesis|dTMP anabolism biological_process owl:Class GO:0061390 biolink:NamedThing positive regulation of direction of cell growth Any process that increases the direction of cell growth. tmpzr1t_l9r_go_relaxed.owl dph 2011-07-14T10:22:55Z biological_process owl:Class GO:0009913 biolink:NamedThing epidermal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis. tmpzr1t_l9r_go_relaxed.owl hypodermal cell differentiation GO:0043355 biological_process owl:Class GO:0018227 biolink:NamedThing peptidyl-S-12-hydroxyfarnesyl-L-cysteine biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form S-12-hydroxyfarnesyl-L-cysteine; formation of S-farnesycysteine may be coupled with subsequent cleavage of a carboxy-terminal tripeptide for the CXXX motif and methyl esterification of the farnesylated cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-12-hydroxyfarnesyl-L-cysteine anabolism from peptidyl-cysteine|peptidyl-S-12-hydroxyfarnesyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-12-hydroxyfarnesyl-L-cysteine synthesis from peptidyl-cysteine RESID:AA0103 biological_process owl:Class GO:0032212 biolink:NamedThing positive regulation of telomere maintenance via telomerase Any process that activates or increases the frequency, rate or extent of the addition of telomeric repeats by telomerase. tmpzr1t_l9r_go_relaxed.owl up regulation of telomere maintenance via telomerase activity|activation of telomere maintenance via telomerase|stimulation of telomere maintenance via telomerase|up-regulation of telomere maintenance via telomerase activity|upregulation of telomere maintenance via telomerase activity biological_process owl:Class GO:0032210 biolink:NamedThing regulation of telomere maintenance via telomerase Any process that modulates the frequency, rate or extent of the addition of telomeric repeats by telomerase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035400 biolink:NamedThing histone tyrosine kinase activity Catalysis of the transfer of a phosphate group to a tyrosine residue of a histone. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl histone-tyrosine kinase activity bf 2010-03-24T09:59:15Z molecular_function owl:Class GO:0004715 biolink:NamedThing non-membrane spanning protein tyrosine kinase activity Catalysis of the reaction: ATP + protein L-tyrosine = ADP + protein L-tyrosine phosphate by a non-membrane spanning protein. tmpzr1t_l9r_go_relaxed.owl non-specific protein-tyrosine kinase activity|cytoplasmic protein tyrosine kinase activity|ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|focal adhesion kinase activity|ATP:protein-tyrosine O-phosphotransferase activity|janus kinase 1 activity|janus kinase 2 activity|Bruton's tyrosine kinase activity|p60c-src protein tyrosine kinase activity|janus kinase 3 activity Reactome:R-HSA-1168767|Reactome:R-HSA-1369115|Reactome:R-HSA-879910|Reactome:R-HSA-437936|Reactome:R-HSA-6786096|Reactome:R-HSA-1112703|Reactome:R-HSA-1168423|Reactome:R-HSA-6788582|Reactome:R-HSA-1295519|MetaCyc:2.7.10.2-RXN|Reactome:R-HSA-6786095|Reactome:R-HSA-453200|Reactome:R-HSA-1112602|Reactome:R-HSA-432148|EC:2.7.10.2|Reactome:R-HSA-8871373|Reactome:R-HSA-1168459 molecular_function owl:Class GO:0044733 biolink:NamedThing envenomation resulting in modulation of acid-sensing ion channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of an acid-sensing ion channel (ASIC) in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in modulation of ASIC channel activity in other organism jl 2012-11-06T15:58:36Z biological_process owl:Class GO:0044560 biolink:NamedThing envenomation resulting in modulation of ion channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of an ion channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of ion channel activity in other organism jl 2012-04-05T03:46:35Z biological_process owl:Class GO:0042766 biolink:NamedThing nucleosome mobilization The movement of nucleosomes along a DNA fragment. tmpzr1t_l9r_go_relaxed.owl nucleosome sliding biological_process owl:Class GO:0034728 biolink:NamedThing nucleosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes. tmpzr1t_l9r_go_relaxed.owl nucleosome organisation biological_process owl:Class GO:1904926 biolink:NamedThing response to palmitoleic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a palmitoleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2016-01-27T23:07:22Z biological_process owl:Class GO:2000487 biolink:NamedThing positive regulation of glutamine transport Any process that activates or increases the frequency, rate or extent of glutamine transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of L-glutamine transport bf 2011-03-11T09:33:39Z biological_process owl:Class GO:1903793 biolink:NamedThing positive regulation of anion transport Any process that activates or increases the frequency, rate or extent of anion transport. tmpzr1t_l9r_go_relaxed.owl activation of anion transport|up-regulation of anion transport|upregulation of anion transport|up regulation of anion transport sl 2015-01-12T21:50:30Z biological_process owl:Class GO:0003346 biolink:NamedThing epicardium-derived cell migration to the myocardium The orderly movement of a cell that have undergone an epithelial to mesenchymal transition from the epicardium into the myocardium. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T11:00:42Z biological_process owl:Class GO:0048335 biolink:NamedThing negative regulation of mesodermal cell fate determination Any process that stops, prevents, or reduces the frequency, rate or extent of mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl inhibition of mesodermal cell fate determination|down-regulation of mesodermal cell fate determination|downregulation of mesodermal cell fate determination|down regulation of mesodermal cell fate determination biological_process owl:Class GO:0048334 biolink:NamedThing regulation of mesodermal cell fate determination Any process that modulates the frequency, rate or extent of mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110027 biolink:NamedThing negative regulation of DNA strand resection involved in replication fork processing Any process that stops, prevents, or reduces the frequency, rate or extent of DNA strand resection involved in replication fork processing. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-05T18:39:49Z biological_process owl:Class GO:0002794 biolink:NamedThing regulation of antimicrobial peptide secretion Any process that modulates the frequency, rate, or extent of antimicrobial peptide secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006851 biolink:NamedThing mitochondrial calcium ion transmembrane transport The process in which a calcium ion (Ca2+) is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial calcium transport biological_process owl:Class GO:0070759 biolink:NamedThing negative regulation of interleukin-35-mediated signaling pathway Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-35 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-35-mediated signalling pathway|negative regulation of IL-35-mediated signaling pathway mah 2009-06-23T02:02:07Z biological_process owl:Class GO:1903917 biolink:NamedThing positive regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation Any process that activates or increases the frequency, rate or extent of endoplasmic reticulum stress-induced eIF2alpha dephosphorylation. tmpzr1t_l9r_go_relaxed.owl activation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|up-regulation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|upregulation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|positive regulation of eIF2alpha dephosphorylation in response to ER stress|positive regulation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|upregulation of eIF2alpha dephosphorylation in response to ER stress|positive regulation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|activation of eIF2alpha dephosphorylation in response to ER stress|up regulation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|upregulation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|activation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|up regulation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|up regulation of eIF2alpha dephosphorylation in response to ER stress|positive regulation of ER stress-induced eIF2 alpha dephosphorylation|up-regulation of eIF2alpha dephosphorylation in response to ER stress|up-regulation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress bf 2015-02-09T11:18:24Z biological_process owl:Class GO:1903916 biolink:NamedThing regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation Any process that modulates the frequency, rate or extent of endoplasmic reticulum stress-induced eIF2alpha dephosphorylation. tmpzr1t_l9r_go_relaxed.owl regulation of ER stress-induced eIF2 alpha dephosphorylation|regulation of eIF2alpha dephosphorylation in response to ER stress|regulation of regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|regulation of eIF2alpha dephosphorylation in response to endoplasmic reticulum stress bf 2015-02-09T11:18:14Z biological_process owl:Class GO:0075250 biolink:NamedThing negative regulation of aeciospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of aeciospore formation, a process in which a dikaryotic spore of typically a rust fungus is produced in an aecium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019156 biolink:NamedThing isoamylase activity Catalysis of the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages in glycogen, amylopectin and their beta-limits dextrins. tmpzr1t_l9r_go_relaxed.owl debranching enzyme activity|glycogen alpha-1,6-glucanohydrolase activity MetaCyc:3.2.1.68-RXN|MetaCyc:RXN-12280|EC:3.2.1.68|MetaCyc:RXN-14380 molecular_function owl:Class GO:0004133 biolink:NamedThing glycogen debranching enzyme activity Catalysis of the cleavage of branch points in branched glycogen polymers. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060735 biolink:NamedThing regulation of eIF2 alpha phosphorylation by dsRNA Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a cellular response to double-stranded RNA. tmpzr1t_l9r_go_relaxed.owl regulation of eIF2 alpha phosphorylation by PKR|regulation of eIF2 alpha phosphorylation by double-stranded RNA dph 2009-06-12T02:27:14Z biological_process owl:Class GO:0048673 biolink:NamedThing collateral sprouting of intact axon in response to injury The process in which outgrowths develop from the axons of intact undamaged neurons as a result of injury to an axon. The collateral sprouts typically appear from undamaged axons in a tissue which has had part of its nerve supply removed, and they can often innervate successfully any cells that have lost some or all of their original synaptic input. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031103 biolink:NamedThing axon regeneration The regrowth of axons following their loss or damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032174 biolink:NamedThing cellular bud neck septin collar A tubular structure with flared ends, shaped like an hourglass and composed of highly ordered arrays of septin filaments, that forms at the bud neck of a dividing cell. In S. cerevisiae, this structure is located at the bud neck throughout most of the cell cycle and the septins are fixed within the structure, not exchanging with soluble septins. This septin structure acts as a scaffold for other proteins that function at the bud neck. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000399 biolink:NamedThing cellular bud neck septin structure Any of a series of septin structures that are localized in the bud neck of a budding fungal cell during the cell cycle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045887 biolink:NamedThing positive regulation of synaptic assembly at neuromuscular junction Any process that activates or increases the frequency, rate or extent of synaptic assembly at neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl activation of synaptic growth at neuromuscular junction|stimulation of synaptic growth at neuromuscular junction|upregulation of synaptic growth at neuromuscular junction|up regulation of synaptic growth at neuromuscular junction|positive regulation of synaptic growth at neuromuscular junction|up-regulation of synaptic growth at neuromuscular junction biological_process owl:Class GO:0009154 biolink:NamedThing purine ribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleotide catabolism|purine ribonucleotide degradation|purine ribonucleotide breakdown biological_process owl:Class GO:0071325 biolink:NamedThing cellular response to mannitol stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannitol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:27:00Z biological_process owl:Class GO:0061134 biolink:NamedThing peptidase regulator activity Binds to and modulates the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T01:15:24Z molecular_function owl:Class GO:0120049 biolink:NamedThing snRNA (adenine-N6)-methylation The posttranscriptional N6-methylation of an adenine residue in an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-02T20:56:51Z biological_process owl:Class GO:0040031 biolink:NamedThing snRNA modification The covalent alteration of one or more nucleotides within snRNA, resulting in a change in the properties of the snRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905597 biolink:NamedThing positive regulation of low-density lipoprotein particle receptor binding Any process that activates or increases the frequency, rate or extent of low-density lipoprotein particle receptor binding. tmpzr1t_l9r_go_relaxed.owl activation of low-density lipoprotein receptor binding|up-regulation of LDL receptor binding|up-regulation of low-density lipoprotein receptor binding|activation of low-density lipoprotein particle receptor binding|up-regulation of low-density lipoprotein particle receptor binding|up regulation of low-density lipoprotein particle receptor binding|upregulation of LDL receptor binding|positive regulation of LDL receptor binding|positive regulation of low-density lipoprotein receptor binding|activation of LDL receptor binding|upregulation of low-density lipoprotein particle receptor binding|up regulation of low-density lipoprotein receptor binding|up regulation of LDL receptor binding|upregulation of low-density lipoprotein receptor binding nc 2016-10-26T10:57:40Z biological_process owl:Class GO:1900122 biolink:NamedThing positive regulation of receptor binding Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. tmpzr1t_l9r_go_relaxed.owl activation of receptor binding|up regulation of receptor binding|upregulation of receptor binding bf 2012-02-22T11:41:00Z biological_process owl:Class GO:0070059 biolink:NamedThing intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. tmpzr1t_l9r_go_relaxed.owl apoptosis in response to endoplasmic reticulum stress|apoptosis triggered by ER stress|intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|endoplasmic reticulum stress-induced apoptosis|apoptosis in response to ER stress|ER stress-induced apoptosis biological_process owl:Class GO:0102816 biolink:NamedThing UDP-D-glucose:delphinidin 3-O-glucosyl-5-O-caffeoylglucoside -O-beta-D-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + delphinidin 3-O-glucosyl-5-O-caffeoylglucoside <=> H+ + delphinidin 3-O-glucosyl-5-O-(caffeoylglucoside-3'-O-glucoside) + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8234|EC:2.4.1.298|RHEA:35423 molecular_function owl:Class GO:0030838 biolink:NamedThing positive regulation of actin filament polymerization Any process that activates or increases the frequency, rate or extent of actin polymerization. tmpzr1t_l9r_go_relaxed.owl positive regulation of actin polymerization|stimulation of actin filament polymerization|up regulation of actin filament polymerization|positive regulation of actin polymerization and/or depolymerization|up-regulation of actin filament polymerization|activation of actin filament polymerization|upregulation of actin filament polymerization Note that this term was split from 'positive regulation of actin polymerization and/or depolymerization ; GO:0045758' (sibling term 'positive regulation of actin depolymerization ; GO:0030836'). biological_process owl:Class GO:0051495 biolink:NamedThing positive regulation of cytoskeleton organization Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl up regulation of cytoskeleton organization|positive regulation of cytoskeleton organization and biogenesis|stimulation of cytoskeleton organization|up-regulation of cytoskeleton organization|positive regulation of cytoskeleton organisation|upregulation of cytoskeleton organization|activation of cytoskeleton organization biological_process owl:Class GO:0031036 biolink:NamedThing myosin II filament assembly The formation of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl myosin II polymerization biological_process owl:Class GO:0031034 biolink:NamedThing myosin filament assembly The aggregation, arrangement and bonding together of a filament composed of myosin molecules. tmpzr1t_l9r_go_relaxed.owl myosin polymerization biological_process owl:Class GO:0051551 biolink:NamedThing aurone biosynthetic process The chemical reactions and pathways resulting in the formation of aurones, a series of yellow plant pigments. tmpzr1t_l9r_go_relaxed.owl benzalcoumaran-3-one biosynthetic process|benzalcoumaran-3-one biosynthesis biological_process owl:Class GO:0031747 biolink:NamedThing type 2 cysteinyl leukotriene receptor binding Binding to a type 2 cysteinyl leukotriene receptor. tmpzr1t_l9r_go_relaxed.owl type 2 cysteinyl leukotriene receptor ligand molecular_function owl:Class GO:0009835 biolink:NamedThing fruit ripening An aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal. tmpzr1t_l9r_go_relaxed.owl fruit maturation|fruit senescence Wikipedia:Ripening biological_process owl:Class GO:0051978 biolink:NamedThing lysophospholipid:sodium symporter activity Enables the directed movement of lysophospholipids from one side of a membrane to the other. A lysophospholipid is a phospholipid that lacks one of its fatty acyl chains; it is an intermediate formed during digestion of dietary and biliary phospholipids. tmpzr1t_l9r_go_relaxed.owl lysophospholipid transporter activity https://github.com/geneontology/go-ontology/issues/17207 molecular_function owl:Class GO:0070299 biolink:NamedThing positive regulation of phosphorelay signal transduction system Any process that activates or increases the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system. tmpzr1t_l9r_go_relaxed.owl positive regulation of histidyl-aspartyl phosphorelay|stimulation of two-component signal transduction|up regulation of two-component signal transduction|activation of two-component signal transduction|positive regulation of two-component signal transduction system (phosphorelay)|upregulation of two-component signal transduction|up-regulation of two-component signal transduction biological_process owl:Class GO:0042903 biolink:NamedThing tubulin deacetylase activity Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5618331 molecular_function owl:Class GO:0033558 biolink:NamedThing protein deacetylase activity Catalysis of the hydrolysis of an acetyl group or groups from a protein substrate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9626962|Reactome:R-HSA-8952069|Reactome:R-HSA-5693092 molecular_function owl:Class GO:1902114 biolink:NamedThing D-valine metabolic process The chemical reactions and pathways involving D-valine. tmpzr1t_l9r_go_relaxed.owl D-valine metabolism al 2013-05-13T23:27:23Z biological_process owl:Class GO:0006573 biolink:NamedThing valine metabolic process The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl valine metabolism biological_process owl:Class GO:0045779 biolink:NamedThing negative regulation of bone resorption Any process that stops, prevents, or reduces the frequency, rate or extent of bone resorption. tmpzr1t_l9r_go_relaxed.owl downregulation of bone resorption|down-regulation of bone resorption|down regulation of bone resorption|inhibition of bone resorption biological_process owl:Class GO:0033186 biolink:NamedThing CAF-1 complex A conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). In many species the CAF-1 subunits are designated p150, p60, and p48. tmpzr1t_l9r_go_relaxed.owl chromatin assembly factor 1 complex In yeast the subunits are MSI1/p50, CAC2/p60 and CAC1/p90. cellular_component owl:Class GO:1990064 biolink:NamedThing ground tissue pattern formation The regionalization process that gives rise to the patterning of the ground tissue. tmpzr1t_l9r_go_relaxed.owl ground tissue patterning tb 2013-03-21T23:24:44Z biological_process owl:Class GO:0044806 biolink:NamedThing G-quadruplex DNA unwinding The process by which G-quadruplex (also known as G4) DNA, which is a four-stranded DNA structure held together by guanine base pairing, is unwound or 'melted'. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-10T16:16:16Z biological_process owl:Class GO:0031434 biolink:NamedThing mitogen-activated protein kinase kinase binding Binding to a mitogen-activated protein kinase kinase, a protein that can phosphorylate a MAP kinase. tmpzr1t_l9r_go_relaxed.owl MAPKK binding molecular_function owl:Class GO:0019901 biolink:NamedThing protein kinase binding Binding to a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033491 biolink:NamedThing coniferin metabolic process The chemical reactions and pathways involving coniferin, 4-(3-hydroxyprop-1-en-1-yl)-2-methoxyphenyl beta-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl coniferin metabolism MetaCyc:PWY-116 biological_process owl:Class GO:0004305 biolink:NamedThing ethanolamine kinase activity Catalysis of the reaction: ATP + ethanolamine = ADP + 2 H(+) + phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl ethanolamine kinase (phosphorylating)|ATP:ethanolamine O-phosphotransferase activity|ethanolamine phosphokinase activity MetaCyc:ETHANOLAMINE-KINASE-RXN|EC:2.7.1.82|KEGG_REACTION:R01468|RHEA:13069|Reactome:R-HSA-1483222 molecular_function owl:Class GO:0070754 biolink:NamedThing regulation of interleukin-35 production Any process that modulates the frequency, rate, or extent of interleukin-35 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-35 biosynthetic process|regulation of IL-35 production mah 2009-06-23T01:29:17Z GO:0070750 biological_process owl:Class GO:0047721 biolink:NamedThing indoleacetate-lysine synthetase activity Catalysis of the reaction: (indol-3-yl)acetate + L-lysine + ATP = N(6)-[(indole-3-yl)acetyl]-L-lysine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl N-(indole-3-acetyl)-L-lysine synthetase activity|(indol-3-yl)acetate:L-lysine ligase (ADP-forming)|IAA-lysine synthetase activity|indoleacetate:L-lysine ligase (ADP-forming)|indoleacetate-lysine ligase activity RHEA:14857|EC:6.3.2.20|MetaCyc:INDOLEACETATE--LYSINE-LIGASE-RXN|KEGG_REACTION:R03095 molecular_function owl:Class GO:0010279 biolink:NamedThing indole-3-acetic acid amido synthetase activity Catalysis of the reaction: indole-3-acetic acid + an amino acid = an indole-3-acetic acid amide conjugate. tmpzr1t_l9r_go_relaxed.owl IAA amido synthetase activity|IAA amino acid synthetase activity|IAA amino acid conjugate synthetase activity molecular_function owl:Class GO:2000395 biolink:NamedThing regulation of ubiquitin-dependent endocytosis Any process that modulates the frequency, rate or extent of ubiquitin-dependent endocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of ubiquitin-mediated endocytosis mah 2011-02-22T11:24:52Z biological_process owl:Class GO:0016169 biolink:NamedThing bacteriochlorophyll c binding Binding to bacteriochlorophyll c, a chlorophyll of photosynthetic bacteria, for example green sulfur bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042314 biolink:NamedThing bacteriochlorophyll binding Binding to bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009212 biolink:NamedThing pyrimidine deoxyribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside triphosphate synthesis|pyrimidine deoxyribonucleoside triphosphate biosynthesis|pyrimidine deoxyribonucleoside triphosphate anabolism|pyrimidine deoxyribonucleoside triphosphate formation biological_process owl:Class GO:0051950 biolink:NamedThing positive regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of gamma-aminobutyric acid reuptake|up-regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|up regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|positive regulation of gamma-aminobutyric acid uptake involved in conduction of nerve impulse|positive regulation of GABA uptake during transmission of nerve impulse|positive regulation of 4-aminobutyrate uptake during transmission of nerve impulse|positive regulation of 4-aminobutyrate reuptake|activation of gamma-aminobutyric acid uptake during transmission of nerve impulse|positive regulation of GABA reuptake|upregulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|stimulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|positive regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse biological_process owl:Class GO:0051943 biolink:NamedThing positive regulation of amino acid uptake involved in synaptic transmission Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of amino acid neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl stimulation of amino acid uptake during transmission of nerve impulse|up regulation of amino acid uptake during transmission of nerve impulse|upregulation of amino acid uptake during transmission of nerve impulse|up-regulation of amino acid uptake during transmission of nerve impulse|activation of amino acid uptake during transmission of nerve impulse|positive regulation of amino acid neurotransmitter uptake|positive regulation of amino acid neurotransmitter reuptake biological_process owl:Class GO:0070296 biolink:NamedThing sarcoplasmic reticulum calcium ion transport The directed movement of calcium ions (Ca2+) into, out of or within the sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006816 biolink:NamedThing calcium ion transport The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mitochondrial sodium/calcium ion exchange|calcium transport|sodium:calcium exchange biological_process owl:Class GO:0051835 biolink:NamedThing positive regulation of synapse structural plasticity Any process that activates, maintains or increases the frequency, rate or extent of synaptic structural plasticity. tmpzr1t_l9r_go_relaxed.owl up regulation of synapse structural plasticity|activation of synapse structural plasticity|upregulation of synapse structural plasticity|up-regulation of synapse structural plasticity|stimulation of synapse structural plasticity biological_process owl:Class GO:0060268 biolink:NamedThing negative regulation of respiratory burst Any process that decreases the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140515 biolink:NamedThing mitotic nuclear bridge organization A mitotic cell cycle process which results in the assembly, arrangement, or disassembly of the mitotic nuclear bridge during closed mitosis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19948 pg 2020-09-09T14:04:33Z biological_process owl:Class GO:0101024 biolink:NamedThing mitotic nuclear membrane organization A mitotic cell cycle process which results in the assembly, arrangement, or disassembly of the nuclear inner or outer membrane during mitosis. tmpzr1t_l9r_go_relaxed.owl nuclear membrane organization involved in mitotic nuclear division https://github.com/geneontology/go-ontology/issues/19949 This process only occurs in organisms which undergo 'closed mitosis' without nuclear breakdown. biological_process owl:Class GO:1905868 biolink:NamedThing regulation of 3'-UTR-mediated mRNA stabilization Any process that modulates the frequency, rate or extent of 3'-UTR-mediated mRNA stabilization. tmpzr1t_l9r_go_relaxed.owl regulation of 3'-untranslated region-mediated mRNA stabilization rz 2017-01-27T11:51:37Z biological_process owl:Class GO:0044632 biolink:NamedThing negative regulation of complement activation, lectin pathway in other organism Any process that stops, prevents, or reduces the rate of complement activation by the lectin pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T01:18:43Z biological_process owl:Class GO:0001869 biolink:NamedThing negative regulation of complement activation, lectin pathway Any process that stops, prevents, or reduces the rate of complement activation by the lectin pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of complement activation, lectin pathway|inhibition of complement activation, lectin pathway|down regulation of complement activation, lectin pathway|downregulation of complement activation, lectin pathway|negative regulation of complement cascade, lectin pathway biological_process owl:Class GO:0031578 biolink:NamedThing mitotic spindle orientation checkpoint signaling A signaling process that monitors and signals errors in the placement or orientation of the spindle in the cell. This delays the completion of anaphase until errors are corrected. tmpzr1t_l9r_go_relaxed.owl SOC|mitotic spindle orientation checkpoint|signal transduction involved in mitotic cell cycle spindle orientation checkpoint|SPOC|mitotic cell cycle spindle orientation checkpoint|spindle position checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072483 biological_process owl:Class GO:0043570 biolink:NamedThing maintenance of DNA repeat elements Any process involved in sustaining the fidelity and copy number of DNA repeat elements. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051049 biolink:NamedThing regulation of transport Any process that modulates the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045899 biolink:NamedThing positive regulation of RNA polymerase II transcription preinitiation complex assembly Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of RNA polymerase II transcriptional preinitiation complex assembly|positive regulation of RNA polymerase II transcriptional pre-initiation complex assembly|up-regulation of RNA polymerase II transcriptional preinitiation complex assembly|up regulation of RNA polymerase II transcriptional preinitiation complex assembly|positive regulation of RNA polymerase II transcriptional preinitiation complex formation|positive regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis|stimulation of RNA polymerase II transcriptional preinitiation complex assembly|activation of RNA polymerase II transcriptional preinitiation complex assembly|upregulation of RNA polymerase II transcriptional preinitiation complex assembly biological_process owl:Class GO:0060261 biolink:NamedThing positive regulation of transcription initiation from RNA polymerase II promoter Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000960 biolink:NamedThing regulation of cellooligosaccharide metabolic process Any process that modulates the frequency, rate or extent of cellooligosaccharide metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellooligosaccharide metabolism tt 2011-08-01T02:25:54Z biological_process owl:Class GO:0018288 biolink:NamedThing iron incorporation into iron-sulfur cluster via tetrakis-L-cysteinyl tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tetrakis-L-cysteinyl tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tetrakis-L-cysteinyl tetrairon tetrasulphide RESID:AA0140 biological_process owl:Class GO:0018133 biolink:NamedThing peptide cross-linking via L-cysteine oxazolinecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl cysteine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue. tmpzr1t_l9r_go_relaxed.owl RESID:AA0239 biological_process owl:Class GO:0010705 biolink:NamedThing meiotic DNA double-strand break processing involved in reciprocal meiotic recombination The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang occurs resulting in double strand break formation and repair through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000706 biolink:NamedThing meiotic DNA double-strand break processing The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang occurs. This takes place during meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902256 biolink:NamedThing regulation of apoptotic process involved in outflow tract morphogenesis Any process that modulates the frequency, rate or extent of apoptotic process involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of apoptosis involved in outflow tract morphogenesis dph 2013-06-24T19:12:24Z biological_process owl:Class GO:1990210 biolink:NamedThing positive regulation by symbiont of indole acetic acid levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the indole acetic acid levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of IAA levels in host|positive regulation by symbiont of auxin levels in host ml 2013-10-09T18:54:11Z biological_process owl:Class GO:0044032 biolink:NamedThing modulation by symbiont of indole acetic acid levels in host The alteration by an organism of the levels of indole acetic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of IAA levels in host|modulation by symbiont of auxin levels in host Note that this term is intended for use in annotation of symbiont gene products. For host gene products that regulate indole acetic acid levels in the host, consider annotating to 'auxin homeostasis ; GO:0010252'. biological_process owl:Class GO:0046939 biolink:NamedThing nucleotide phosphorylation The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002929 biolink:NamedThing MECO complex A highly stable complex composed of the ATAC complex and the mediator complex (also called TRAP or MED). MECO binds and regulates the transcription of a subset of non-coding RNAs transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl meta-coactivator complex hjd 2012-03-14T02:50:13Z cellular_component owl:Class GO:0034184 biolink:NamedThing positive regulation of maintenance of mitotic sister chromatid cohesion Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052335 biolink:NamedThing modification by host of symbiont cytoskeleton The process in which an organism effects a change in the structure or function of the symbiont cytoskeleton. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140484 biolink:NamedThing 5-aminolevulinic acid import across plasma membrane The directed movement of 5-aminolevulinic acid from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19527 pg 2020-06-29T08:59:24Z biological_process owl:Class GO:0103036 biolink:NamedThing NADH:menaquinone oxidoreductase activity Catalysis of the reaction: 5 H+ + NADH + a menaquinone <=> 4 H+ + NAD + a menaquinol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5388 molecular_function owl:Class GO:0016655 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor EC:1.6.5.- molecular_function owl:Class GO:0004365 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl phosphoglyceraldehyde dehydrogenase activity|glyceraldehyde-3-P-dehydrogenase activity|triosephosphate dehydrogenase activity|NAD-dependent glyceraldehyde-3-phosphate dehydrogenase activity|NADH-glyceraldehyde phosphate dehydrogenase activity|D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)|3-phosphoglyceraldehyde dehydrogenase activity|glyceraldehyde phosphate dehydrogenase (NAD)|dehydrogenase, glyceraldehyde phosphate|GAPDH activity|NAD-dependent glyceraldehyde phosphate dehydrogenase activity RHEA:10300|Reactome:R-HSA-70449|MetaCyc:GAPOXNPHOSPHN-RXN|Reactome:R-HSA-70482|EC:1.2.1.12 molecular_function owl:Class GO:0061628 biolink:NamedThing H3K27me3 modified histone binding Binding to a histone H3 in which the lysine residue at position 27 has been modified by trimethylation. tmpzr1t_l9r_go_relaxed.owl H3-K27me3 modified histone binding dph 2014-05-14T15:36:53Z molecular_function owl:Class GO:0019788 biolink:NamedThing NEDD8 transferase activity Catalysis of the transfer of NEDD8 from one protein to another via the reaction X-NEDD8 + Y --> Y-NEDD8 + X, where both X-NEDD8 and Y-NEDD8 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl NEDD8 conjugating enzyme activity|RUB1 conjugating enzyme activity|Hub1 conjugating enzyme activity Reactome:R-HSA-8951764|Reactome:R-HSA-8952618|Reactome:R-HSA-8956025|Reactome:R-HSA-8952638|Reactome:R-HSA-8951661|Reactome:R-HSA-8951648|Reactome:R-HSA-8952044 GO:0019945|GO:0016976|GO:0042295 molecular_function owl:Class GO:0019787 biolink:NamedThing ubiquitin-like protein transferase activity Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein. tmpzr1t_l9r_go_relaxed.owl ubiquitin-like conjugating enzyme activity|E3|small conjugating protein transferase activity|small conjugating protein ligase activity|ubiquitin-like-protein ligase activity|E2|small protein conjugating enzyme activity Reactome:R-HSA-5678490|Reactome:R-HSA-688137 GO:0008640|GO:0008639 molecular_function owl:Class GO:0071155 biolink:NamedThing G-protein alpha(13)-synembrin complex A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(13) subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl Ric-8A G alpha 13 subunit complex mah 2009-11-16T05:01:55Z cellular_component owl:Class GO:0034143 biolink:NamedThing regulation of toll-like receptor 4 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 4 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 4 signalling pathway|regulation of TLR4 signaling pathway biological_process owl:Class GO:0016720 biolink:NamedThing delta12-fatty acid dehydrogenase activity Catalysis of the reaction: AH(2) + linoleate + O(2) = A + crepenynate + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl linoleate delta12-fatty acid acetylenase (desaturase)|delta12 fatty acid acetylenase activity|delta-12 fatty acid acetylenase activity|linoleate delta-12-fatty acid acetylenase (desaturase) activity|linoleate, hydrogen-donor:oxygen oxidoreductase (Delta12-unsaturating)|crepenynate synthase activity|D12-fatty acid dehydrogenase activity KEGG_REACTION:R05740|EC:1.14.99.33|RHEA:23456|MetaCyc:1.14.99.33-RXN molecular_function owl:Class GO:0033048 biolink:NamedThing negative regulation of mitotic sister chromatid segregation Any process that stops, prevents, or reduces the frequency, rate or extent of sister chromatid segregation during mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102942 biolink:NamedThing 3,5-dimethoxyphenol O-methyltransferase activity Catalysis of the reaction: 3,5-dimethoxyphenol + S-adenosyl-L-methionine = H+ + 1,3,5-trimethoxybenzene + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9022 molecular_function owl:Class GO:0019385 biolink:NamedThing methanogenesis, from acetate The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including acetate. tmpzr1t_l9r_go_relaxed.owl methane biosynthetic process from acetate|methane biosynthesis from acetate MetaCyc:METH-ACETATE-PWY biological_process owl:Class GO:0047768 biolink:NamedThing carboxy-cis,cis-muconate cyclase activity Catalysis of the reaction: 3-carboxy-2,5-dihydro-5-oxofuran-2-acetate = 3-carboxy-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl 3-carboxy-cis,cis-muconate lactonizing enzyme activity|3-carboxymuconate cyclase activity|3-carboxy-2,5-dihydro-5-oxofuran-2-acetate lyase (decyclizing) EC:5.5.1.5|KEGG_REACTION:R03308|RHEA:14977|MetaCyc:CARBOXY-CISCIS-MUCONATE-CYCLASE-RXN molecular_function owl:Class GO:0003333 biolink:NamedThing amino acid transmembrane transport The process in which an amino acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl amino acid membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. dph 2009-11-02T02:36:11Z biological_process owl:Class GO:0033594 biolink:NamedThing response to hydroxyisoflavone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroxyisoflavone stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035680 biolink:NamedThing posterior lateral line neuromast hair cell morphogenesis The change in form (cell shape and size) that occurs when a posterior lateral line neuromast hair cell progresses from its initial formation to its mature state. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:08:14Z biological_process owl:Class GO:0035678 biolink:NamedThing neuromast hair cell morphogenesis The change in form (cell shape and size) that occurs when a neuromast hair cell progresses from its initial formation to its mature state. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:06:15Z biological_process owl:Class GO:0002857 biolink:NamedThing positive regulation of natural killer cell mediated immune response to tumor cell Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell. tmpzr1t_l9r_go_relaxed.owl up regulation of natural killer cell mediated immune response to tumor cell|upregulation of natural killer cell mediated immune response to tumor cell|stimulation of natural killer cell mediated immune response to tumor cell|activation of natural killer cell mediated immune response to tumor cell|up-regulation of natural killer cell mediated immune response to tumor cell biological_process owl:Class GO:0048697 biolink:NamedThing positive regulation of collateral sprouting in absence of injury Any process that activates or increases the frequency, rate or extent of collateral sprouting in the absence of injury. tmpzr1t_l9r_go_relaxed.owl stimulation of collateral sprouting in the absence of injury|up-regulation of collateral sprouting in the absence of injury|up regulation of collateral sprouting in the absence of injury|upregulation of collateral sprouting in the absence of injury|activation of collateral sprouting in the absence of injury biological_process owl:Class GO:0048672 biolink:NamedThing positive regulation of collateral sprouting Any process that activates or increases the frequency, rate or extent of collateral sprouting. tmpzr1t_l9r_go_relaxed.owl upregulation of collateral sprouting|up regulation of collateral sprouting|up-regulation of collateral sprouting|stimulation of collateral sprouting|activation of collateral sprouting biological_process owl:Class GO:0061472 biolink:NamedThing karyomere membrane fusion Process whereby karyomere membranes fuse during interphase to form a single lobed nucleus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-02T09:25:41Z biological_process owl:Class GO:1990543 biolink:NamedThing mitochondrial S-adenosyl-L-methionine transmembrane transport The process in which S-adenosyl-L-methionine is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:26:27Z biological_process owl:Class GO:0006091 biolink:NamedThing generation of precursor metabolites and energy The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. tmpzr1t_l9r_go_relaxed.owl energy pathways|metabolic energy generation|intermediary metabolism biological_process owl:Class GO:0035804 biolink:NamedThing structural constituent of egg coat The action of a molecule that contributes to the structural integrity of an egg coat. An egg coat is a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development. tmpzr1t_l9r_go_relaxed.owl structural constituent of vitelline envelope|structural constituent of zona pellucida bf 2011-04-19T01:56:06Z molecular_function owl:Class GO:0005201 biolink:NamedThing extracellular matrix structural constituent The action of a molecule that contributes to the structural integrity of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl core matrisome|core extracellular matrix|extracellular matrix glycoprotein Extracellular matrix glycoproteins may be annotated to this term. PMID:24443019 molecular_function owl:Class GO:0046963 biolink:NamedThing 3'-phosphoadenosine 5'-phosphosulfate transport The directed movement of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl PAPS transport|adenosine 3'-phosphate 5'-phosphosulfate transport|3'-phosphoadenosine 5'-phosphosulphate transport biological_process owl:Class GO:1904571 biolink:NamedThing positive regulation of selenocysteine incorporation Any process that activates or increases the frequency, rate or extent of selenocysteine incorporation. tmpzr1t_l9r_go_relaxed.owl activation of selenocysteine incorporation|up-regulation of selenocysteine incorporation|up regulation of selenocysteine incorporation|upregulation of selenocysteine incorporation sl 2015-08-19T17:26:50Z biological_process owl:Class GO:0045901 biolink:NamedThing positive regulation of translational elongation Any process that activates or increases the frequency, rate or extent of translational elongation. tmpzr1t_l9r_go_relaxed.owl stimulation of translational elongation|upregulation of translational elongation|up regulation of translational elongation|activation of translational elongation|up-regulation of translational elongation biological_process owl:Class GO:0001949 biolink:NamedThing sebaceous gland cell differentiation The process in which a relatively unspecialized epidermal cell acquires the specialized features of a sebaceous gland cell. tmpzr1t_l9r_go_relaxed.owl sebocytes differentiation biological_process owl:Class GO:1901194 biolink:NamedThing negative regulation of formation of translation preinitiation complex Any process that stops, prevents or reduces the frequency, rate or extent of formation of translation preinitiation complex. tmpzr1t_l9r_go_relaxed.owl down-regulation of formation of translation preinitiation complex|down regulation of formation of translation preinitiation complex|inhibition of translation preinitiation complex assembly|inhibition of formation of translation pre-initiation complex|down regulation of formation of translation pre-initiation complex|down regulation of translation preinitiation complex assembly|down-regulation of formation of translation pre-initiation complex|negative regulation of translation preinitiation complex assembly|down-regulation of translation preinitiation complex assembly|downregulation of formation of translation pre-initiation complex|downregulation of translation preinitiation complex assembly|inhibition of formation of translation preinitiation complex|downregulation of formation of translation preinitiation complex|negative regulation of formation of translation pre-initiation complex ss 2012-07-25T02:31:41Z biological_process owl:Class GO:1904689 biolink:NamedThing negative regulation of cytoplasmic translational initiation Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translational initiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cytoplasmic translational initiation|downregulation of cytoplasmic translational initiation|inhibition of cytoplasmic translational initiation|down regulation of cytoplasmic translational initiation dos 2015-09-25T14:39:44Z biological_process owl:Class GO:0120297 biolink:NamedThing histone dopaminyltransferase activity Catalysis of the reaction: dopamine + L-glutaminyl-[histone] = 5-dopaminyl-L-glutamyl-[histone] + NH4(+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 krc 2021-01-19T03:17:13Z molecular_function owl:Class GO:0120296 biolink:NamedThing peptide dopaminyltransferase activity Catalysis of the reaction: dopamine + L-glutaminyl-[protein] = 5-dopaminyl-L-glutamyl-[protein] + NH4(+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 RHEA:66556 krc 2021-01-19T02:20:30Z molecular_function owl:Class GO:0007313 biolink:NamedThing maternal specification of dorsal/ventral axis, oocyte, soma encoded Polarization of the oocyte along the dorsal-ventral axis, by a gene product encoded by somatic cells. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl maternal specification of dorsoventral axis, oocyte, soma encoded|maternal specification of dorsal-ventral axis, oocyte, soma encoded|maternal determination of dorsal/ventral axis, oocyte, soma encoded GO:0048125 biological_process owl:Class GO:0007310 biolink:NamedThing oocyte dorsal/ventral axis specification The establishment, maintenance and elaboration of the dorsal/ventral axis of the oocyte. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte dorsal/ventral axis determination|oocyte dorsoventral axis specification|oocyte dorsal-ventral axis specification GO:0048123|GO:0008072 biological_process owl:Class GO:2001308 biolink:NamedThing gliotoxin metabolic process The chemical reactions and pathways involving the epipolythiodioxopiperazine gliotoxin, a poisonous substance produced by some species of fungi. tmpzr1t_l9r_go_relaxed.owl gliotoxin metabolism pr 2012-03-15T03:42:10Z biological_process owl:Class GO:1900273 biolink:NamedThing positive regulation of long-term synaptic potentiation Any process that activates or increases the frequency, rate or extent of long-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of long-term potentiation|upregulation of LTP|up regulation of long-term synaptic potentiation|activation of long-term potentiation|positive regulation of LTP|up-regulation of long-term potentiation|activation of LTP|up-regulation of LTP|upregulation of long-term potentiation|up-regulation of long-term synaptic potentiation|up regulation of LTP|activation of long-term synaptic potentiation|upregulation of long-term synaptic potentiation|positive regulation of long-term potentiation rl 2012-04-04T07:17:30Z biological_process owl:Class GO:1903603 biolink:NamedThing thermospermine biosynthetic process The chemical reactions and pathways resulting in the formation of thermospermine. tmpzr1t_l9r_go_relaxed.owl thermospermine anabolism|thermospermine formation|thermospermine biosynthesis|thermospermine synthesis tb 2014-11-12T18:48:12Z biological_process owl:Class GO:0006596 biolink:NamedThing polyamine biosynthetic process The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. tmpzr1t_l9r_go_relaxed.owl polyamine synthesis|polyamine biosynthesis|polyamine anabolism|polyamine formation MetaCyc:POLYAMSYN-PWY biological_process owl:Class GO:1900713 biolink:NamedThing regulation of violaceol I biosynthetic process Any process that modulates the frequency, rate or extent of violaceol I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of violaceol I biosynthesis|regulation of violaceol I synthesis|regulation of violaceol I formation|regulation of violaceol I anabolism di 2012-05-22T05:04:12Z biological_process owl:Class GO:0005592 biolink:NamedThing collagen type XI trimer A collagen heterotrimer containing type XI alpha chains in alpha1(XI)alpha2(XI)alpha3(XI) trimers; type XI collagen triple helices associate to form fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005583 biolink:NamedThing fibrillar collagen trimer Any triple helical collagen trimer that forms fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042433 biolink:NamedThing indole catabolic process The chemical reactions and pathways resulting in the breakdown of indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan). tmpzr1t_l9r_go_relaxed.owl indole breakdown|indole catabolism|indole degradation biological_process owl:Class GO:0042436 biolink:NamedThing indole-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton. tmpzr1t_l9r_go_relaxed.owl indole derivative catabolism|indole derivative catabolic process|indole-containing compound degradation|indole-containing compound catabolism|indole-containing compound breakdown biological_process owl:Class GO:0015251 biolink:NamedThing ammonium channel activity Enables the facilitated diffusion of ammonium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008519 biolink:NamedThing ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. tmpzr1t_l9r_go_relaxed.owl ammonia transmembrane transporter activity Reactome:R-HSA-446277|Reactome:R-HSA-444393|Reactome:R-HSA-446278|Reactome:R-HSA-5623051|RHEA:28747|Reactome:R-HSA-444416|Reactome:R-HSA-444419 GO:0051739 molecular_function owl:Class GO:0071457 biolink:NamedThing cellular response to ozone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:45:59Z biological_process owl:Class GO:0010193 biolink:NamedThing response to ozone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047839 biolink:NamedThing dATP(dGTP)-DNA purinetransferase activity Catalysis of the reaction: dATP + depurinated DNA = ribose triphosphate + DNA. tmpzr1t_l9r_go_relaxed.owl dATP(dGTP):depurinated-DNA purine transferase activity|dATP(dGTP)--DNA purine transferase activity EC:2.6.99.1|MetaCyc:DATPDGTP--DNA-PURINE-TRANSFERASE-RXN molecular_function owl:Class GO:0016769 biolink:NamedThing transferase activity, transferring nitrogenous groups Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring other nitrogenous groups EC:2.6.-.- molecular_function owl:Class GO:1902842 biolink:NamedThing negative regulation of netrin-activated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of netrin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of netrin-activated signaling pathway|negative regulation of netrin signaling pathway|downregulation of netrin-activated signalling pathway|downregulation of netrin signaling pathway|down regulation of netrin-activated signal transduction pathway|downregulation of netrin-activated signal transduction pathway|downregulation of netrin-activated signaling pathway|down-regulation of netrin-activated signalling pathway|down-regulation of netrin-mediated signaling pathway|inhibition of netrin-activated signalling pathway|negative regulation of netrin-activated signal transduction pathway|down regulation of netrin-mediated signaling pathway|negative regulation of netrin-mediated signaling pathway|down regulation of netrin signaling pathway|down-regulation of netrin-activated signal transduction pathway|inhibition of netrin signaling pathway|downregulation of netrin-mediated signaling pathway|down regulation of netrin-activated signaling pathway|down-regulation of netrin-activated signaling pathway|negative regulation of netrin-activated signalling pathway|down-regulation of netrin signaling pathway|inhibition of netrin-activated signal transduction pathway|inhibition of netrin-mediated signaling pathway|down regulation of netrin-activated signalling pathway kmv 2014-04-01T15:25:33Z biological_process owl:Class GO:0005863 biolink:NamedThing striated muscle myosin thick filament Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032982 biolink:NamedThing myosin filament A supramolecular fiber containing myosin heavy chains, plus associated light chains and other proteins, in which the myosin heavy chains are arranged into a filament. tmpzr1t_l9r_go_relaxed.owl myosin thick filament|thick filament cellular_component owl:Class GO:0008840 biolink:NamedThing 4-hydroxy-tetrahydrodipicolinate synthase activity Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O. tmpzr1t_l9r_go_relaxed.owl L-aspartate-4-semialdehyde hydro-lyase (adding pyruvate and cyclizing)|dihydrodipicolinate synthase activity|DHDPS activity|dihydrodipicolinate synthetase activity|dihydropicolinate synthetase activity|dihydrodipicolinic acid synthase activity|L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing; (S)-2,3-dihydropyridine-2,6-dicarboxylate-forming] KEGG_REACTION:R02292|MetaCyc:DIHYDRODIPICSYN-RXN|RHEA:14845|EC:4.3.3.7 molecular_function owl:Class GO:0050797 biolink:NamedThing thymidylate synthase (FAD) activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP + NADPH + H+ = dTMP + tetrahydrofolate + NADP+. tmpzr1t_l9r_go_relaxed.owl Thy1 activity|flavin dependent thymidylate synthase activity|ThyX activity|5,10-methylenetetrahydrofolate,FADH2:dUMP C-methyltransferase activity|FDTS activity RHEA:29043|EC:2.1.1.148|MetaCyc:RXN-8850|KEGG_REACTION:R06613 molecular_function owl:Class GO:0042083 biolink:NamedThing 5,10-methylenetetrahydrofolate-dependent methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule; dependent on the presence of 5,10-methylenetetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042883 biolink:NamedThing cysteine transport The directed movement of cysteine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-cysteine transport biological_process owl:Class GO:0019172 biolink:NamedThing glyoxalase III activity Catalysis of the reaction: methylglyoxal + H2O = D-lactate. tmpzr1t_l9r_go_relaxed.owl (R)-lactate hydro-lyase|D-lactate dehydratase|glutathione-independent glyoxalase activity RHEA:27754|MetaCyc:GLYOXIII-RXN|EC:4.2.1.130 Note that this term was reinstated from obsolete. Also note that this enzymatic activity converts methylglyoxal to D-lactate in a single glutathione (GSH)-independent step. The other known route for this conversion is the two-step GSH-dependent pathway catalyzed by EC:4.4.1.5 (lactoylglutathione lyase) and EC:3.1.2.6 (hydroxyacylglutathione hydrolase). molecular_function owl:Class GO:0120137 biolink:NamedThing positive regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity Any process that activates or increases the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-21T21:59:55Z biological_process owl:Class GO:0006437 biolink:NamedThing tyrosyl-tRNA aminoacylation The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase. The tyrosyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a tyrosine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033560 biolink:NamedThing folate reductase activity Catalysis of the reaction: 7,8-dihydrofolate + NADP+ = folate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:31103|Reactome:R-HSA-197963|Reactome:R-HSA-197972 molecular_function owl:Class GO:0071866 biolink:NamedThing negative regulation of apoptotic process in bone marrow cell Any process that stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow. tmpzr1t_l9r_go_relaxed.owl negative regulation of apoptosis in bone marrow|down-regulation of apoptosis in bone marrow|inhibition of apoptosis in bone marrow|down regulation of apoptosis in bone marrow|negative regulation of bone marrow cell apoptosis|negative regulation of killing of bone marrow cells|downregulation of apoptosis in bone marrow|negative regulation of apoptotic process in bone marrow|negative regulation of bone marrow cell programmed cell death by apoptosis|negative regulation of programmed cell death, bone marrow cells|negative regulation of programmed cell death of bone marrow cells by apoptosis mah 2010-09-13T02:17:38Z biological_process owl:Class GO:0010519 biolink:NamedThing negative regulation of phospholipase activity Any process that decreases the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060192 biolink:NamedThing negative regulation of lipase activity Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010322 biolink:NamedThing regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent). tmpzr1t_l9r_go_relaxed.owl regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway biological_process owl:Class GO:0102823 biolink:NamedThing kaempferol-3-rhamnoside-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + kaempferol-3-rhamnoside <=> kaempferol 3-O-rhamnoside-7-O-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8266 molecular_function owl:Class GO:2000358 biolink:NamedThing positive regulation of kidney smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of kidney smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-03T02:14:31Z biological_process owl:Class GO:0098880 biolink:NamedThing maintenance of postsynaptic specialization structure A process which maintains the organization and the arrangement of proteins in the presynaptic specialization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033351 biolink:NamedThing UDP-D-apiose metabolic process The chemical reactions and pathways involving UDP-D-apiose, uridinediphosphoapiose, a substance composed of apiose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-apiose metabolism biological_process owl:Class GO:0009225 biolink:NamedThing nucleotide-sugar metabolic process The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl nucleotide-sugar metabolism https://github.com/geneontology/go-ontology/issues/14587 biological_process owl:Class GO:1902770 biolink:NamedThing negative regulation of choline O-acetyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of choline O-acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of choline acetyltransferase activity|down-regulation of choline O-acetyltransferase activity|downregulation of acetyl-CoA:choline O-acetyltransferase activity|downregulation of CHOACTase activity|inhibition of acetyl-CoA:choline O-acetyltransferase activity|down-regulation of acetyl-CoA:choline O-acetyltransferase activity|inhibition of CHOACTase activity|down regulation of choline acetylase activity|negative regulation of choline acetylase activity|negative regulation of CHOACTase activity|negative regulation of acetyl-CoA:choline O-acetyltransferase activity|down regulation of choline acetyltransferase activity|down regulation of CHOACTase activity|down-regulation of choline acetylase activity|inhibition of choline acetylase activity|downregulation of choline acetylase activity|inhibition of choline O-acetyltransferase activity|negative regulation of choline acetyltransferase activity|downregulation of choline O-acetyltransferase activity|inhibition of choline acetyltransferase activity|down regulation of acetyl-CoA:choline O-acetyltransferase activity|down-regulation of CHOACTase activity|down regulation of choline O-acetyltransferase activity|down-regulation of choline acetyltransferase activity mr 2014-03-11T18:56:50Z biological_process owl:Class GO:1902769 biolink:NamedThing regulation of choline O-acetyltransferase activity Any process that modulates the frequency, rate or extent of choline O-acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of CHOACTase activity|regulation of acetyl-CoA:choline O-acetyltransferase activity|regulation of choline acetylase activity|regulation of choline acetyltransferase activity mr 2014-03-11T18:54:26Z biological_process owl:Class GO:0120066 biolink:NamedThing pyloric canal smooth muscle contraction A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the distal part of the pylorus between the pyloric antrum and the pyloric sphincter. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T22:37:51Z biological_process owl:Class GO:0120064 biolink:NamedThing stomach pylorus smooth muscle contraction A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the most distal part of the stomach. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T22:32:04Z biological_process owl:Class GO:1902045 biolink:NamedThing negative regulation of Fas signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of Fas signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of FasR signaling pathway|down-regulation of Fas receptor signaling pathway|down-regulation of FasL signaling pathway|inhibition of CD95 signaling pathway|down-regulation of Fas-FasL signaling pathway|down regulation of Fas receptor signaling pathway|down regulation of Fas-FasL signaling pathway|down regulation of Fas signaling pathway|down regulation of Apo-1 signaling pathway|inhibition of Apo-1 signaling pathway|down-regulation of FasR signaling pathway|down-regulation of Apo-1 signaling pathway|down-regulation of Fas signaling pathway|negative regulation of Apo-1 signaling pathway|inhibition of FasR signaling pathway|downregulation of FasL signaling pathway|down regulation of FasL signaling pathway|down regulation of FAS ligand-Fas signaling pathway|downregulation of Apo-1 signaling pathway|inhibition of Fas receptor signaling pathway|down-regulation of FAS ligand-Fas signaling pathway|downregulation of FasR signaling pathway|downregulation of FAS ligand-Fas signaling pathway|negative regulation of FasL signaling pathway|inhibition of FAS ligand-Fas signaling pathway|down regulation of CD95 signaling pathway|inhibition of FasL signaling pathway|inhibition of Fas signaling pathway|downregulation of Fas-FasL signaling pathway|down-regulation of CD95 signaling pathway|negative regulation of FAS ligand-Fas signaling pathway|negative regulation of FasR signaling pathway|downregulation of CD95 signaling pathway|negative regulation of CD95 signaling pathway|negative regulation of Fas-FasL signaling pathway|downregulation of Fas signaling pathway|downregulation of Fas receptor signaling pathway|inhibition of Fas-FasL signaling pathway|negative regulation of Fas receptor signaling pathway lb 2013-04-03T07:21:28Z biological_process owl:Class GO:0035788 biolink:NamedThing cell migration involved in metanephros development The orderly movement of a cell from one site to another that will contribute to the progression of the metanephric kidney over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl cell migration involved in metanephric kidney development bf 2011-04-06T10:42:21Z biological_process owl:Class GO:0035787 biolink:NamedThing cell migration involved in kidney development The orderly movement of a cell from one site to another that will contribute to the progression of the kidney over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-06T10:39:52Z biological_process owl:Class GO:1902345 biolink:NamedThing positive regulation of maltose transport Any process that activates or increases the frequency, rate or extent of maltose transport. tmpzr1t_l9r_go_relaxed.owl up regulation of maltose transport|upregulation of maltose transport|activation of maltose transport|up-regulation of maltose transport dph 2013-08-01T17:16:34Z biological_process owl:Class GO:0099179 biolink:NamedThing regulation of synaptic membrane adhesion Any process that modulates the frequency, rate or extent of adhesion between pre- and post-synaptic membranes. tmpzr1t_l9r_go_relaxed.owl regulation of synapse adhesion between pre- and post-synapse biological_process owl:Class GO:0051107 biolink:NamedThing negative regulation of DNA ligation Any process that stops, prevents, or reduces the frequency, rate or extent of DNA ligation, the re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA ligation|down-regulation of DNA ligation|inhibition of DNA ligation|down regulation of DNA ligation biological_process owl:Class GO:0051053 biolink:NamedThing negative regulation of DNA metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving DNA. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA metabolic process|inhibition of DNA metabolic process|negative regulation of DNA metabolism|downregulation of DNA metabolic process|down-regulation of DNA metabolic process biological_process owl:Class GO:0031981 biolink:NamedThing nuclear lumen The volume enclosed by the nuclear inner membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072729 biolink:NamedThing cellular response to Gentian violet Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Gentian violet stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride|cellular response to crystal violet mah 2012-05-31T11:23:40Z biological_process owl:Class GO:0071310 biolink:NamedThing cellular response to organic substance Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:46:04Z biological_process owl:Class GO:0050102 biolink:NamedThing cellodextrin phosphorylase activity Catalysis of the reaction: 1,4-beta-D-glucosyl(n) + phosphate = 1,4-beta-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl beta-1,4-oligoglucan:orthophosphate glucosyltransferase activity|1,4-beta-D-oligo-D-glucan:phosphate alpha-D-glucosyltransferase activity EC:2.4.1.49|MetaCyc:CELLODEXTRIN-PHOSPHORYLASE-RXN|RHEA:23024 molecular_function owl:Class GO:0009158 biolink:NamedThing ribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside monophosphate degradation|ribonucleoside monophosphate catabolism|ribonucleoside monophosphate breakdown biological_process owl:Class GO:0009334 biolink:NamedThing 3-phenylpropionate dioxygenase complex Enzyme complex consisting of four proteins: the two subunits of the hydroxylase component (hcaE and hcaF), a ferredoxin (hcaC) and a ferredoxin reductase (hcaD). Converts 3-phenylpropionic acid (PP) into cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol). tmpzr1t_l9r_go_relaxed.owl MetaCyc:HCAMULTI-CPLX See also the molecular function term '3-phenylpropionate dioxygenase activity ; GO:0008695'. cellular_component owl:Class GO:0051246 biolink:NamedThing regulation of protein metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein. tmpzr1t_l9r_go_relaxed.owl regulation of protein metabolism biological_process owl:Class GO:0031428 biolink:NamedThing box C/D RNP complex A ribonucleoprotein complex containing a box C/D type RNA that can carry out ribose-2'-O-methylation of target RNAs. Box C/D type RNAs are widespread in eukaryotes and in Archaea, suggesting that an RNA-based guide mechanism for directing specific RNA 2'-O-ribose methylations was present in the common ancestor of Archaea and Eukarya. tmpzr1t_l9r_go_relaxed.owl box C/D sRNP complex|box C/D snoRNP complex|box C/D snoRNP ribose 2'-O methylase complex|box C/D snoRNP ribose-2'-O-methyltransferase complex|box C/D small nucleolar ribonucleoprotein complex https://github.com/geneontology/go-ontology/issues/20416 cellular_component owl:Class GO:0005732 biolink:NamedThing sno(s)RNA-containing ribonucleoprotein complex A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA. tmpzr1t_l9r_go_relaxed.owl small ribonucleoprotein protein complex|small nucleolar ribonucleoprotein|small ribonucleoprotein|small nucleolar ribonucleoprotein complex|snoRNP|sRNP https://github.com/geneontology/go-ontology/issues/20416 Note that 'nucleolar' in the name acronym 'snoRNA' is part of the RNA family designation 'small nucleolar', and does not reflect the location of the complex. Both box C/D type and box H/ACA RNAs are found in Archaea (where they are referred to as sRNAs) as well as in Eukaryota. In eukaryotes, box H/ACA RNAs are found in both nucleolar-localized snoRNP complexes and in Cajal body-localized scaRNP complexes. cellular_component owl:Class GO:0042692 biolink:NamedThing muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a muscle cell. tmpzr1t_l9r_go_relaxed.owl myogenesis biological_process owl:Class GO:0060131 biolink:NamedThing corticotropin hormone secreting cell development The process whose specific outcome is the progression of a corticotropic hormone secreting cell over time, from its formation to the mature structure. An corticotropic hormone secreting cell is a basophil cell of the anterior pituitary that produces corticotropin. tmpzr1t_l9r_go_relaxed.owl corticotroph development|corticotrope development|adrenocorticotropic hormone secreting cell development|adrenocorticotrophic hormone secreting cell development|corticotrophin hormone secreting cell development biological_process owl:Class GO:0052709 biolink:NamedThing N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process The chemical reactions and pathways resulting in the formation of N-alpha,N-alpha,N-alpha-trimethyl-L-histidine, also known as histidine betaine or hercynine, a trimethylated derivative of histidine. tmpzr1t_l9r_go_relaxed.owl histidine betaine synthesis|histidine betaine biosynthetic process|hercynine synthesis|hercynine biosynthetic process|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine formation|histidine betaine formation|hercynine biosynthesis|hercynine anabolism|histidine betaine anabolism|hercynine formation|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine anabolism|histidine betaine biosynthesis|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine synthesis|N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis ai 2011-08-05T02:22:05Z biological_process owl:Class GO:0019260 biolink:NamedThing 1,2-dichloroethane catabolic process The chemical reactions and pathways resulting in the breakdown of 1,2-dichloroethane, a major commodity chemical used, for example, in the manufacture of vinyl chloride. tmpzr1t_l9r_go_relaxed.owl 1,2-dichloroethane catabolism|1,2-dichloroethane breakdown|1,2-dichloroethane degradation MetaCyc:12DICHLORETHDEG-PWY biological_process owl:Class GO:0042206 biolink:NamedThing halogenated hydrocarbon catabolic process The chemical reactions and pathways resulting in the breakdown of halogenated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with halogen atoms. tmpzr1t_l9r_go_relaxed.owl halogenated hydrocarbon catabolism|halogenated hydrocarbon degradation|halogenated hydrocarbon breakdown biological_process owl:Class GO:1900786 biolink:NamedThing naphtho-gamma-pyrone catabolic process The chemical reactions and pathways resulting in the breakdown of naphtho-gamma-pyrone. tmpzr1t_l9r_go_relaxed.owl naphtho-gamma-pyrones catabolism|naphtho-gamma-pyrone degradation|naphtho-gamma-pyrones degradation|naphtho-gamma-pyrones catabolic process|naphtho-gamma-pyrone breakdown|naphtho-gamma-pyrone catabolism|naphtho-gamma-pyrones breakdown di 2012-06-04T09:35:54Z biological_process owl:Class GO:0042182 biolink:NamedThing ketone catabolic process The chemical reactions and pathways resulting in the breakdown of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups. tmpzr1t_l9r_go_relaxed.owl ketone catabolism|ketone degradation|ketone breakdown biological_process owl:Class GO:0014047 biolink:NamedThing glutamate secretion The controlled release of glutamate by a cell. The glutamate is the most abundant excitatory neurotransmitter in the nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904540 biolink:NamedThing positive regulation of glycolytic process through fructose-6-phosphate Any process that activates or increases the frequency, rate or extent of glycolytic process through fructose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl activation of glycolytic process through fructose-6-phosphate|positive regulation of glycolysis through fructose-6-phosphate|up regulation of glycolysis through fructose-6-phosphate|up-regulation of glycolytic process through fructose-6-phosphate|upregulation of glycolytic process through fructose-6-phosphate|upregulation of glycolysis through fructose-6-phosphate|up-regulation of glycolysis through fructose-6-phosphate|up regulation of glycolytic process through fructose-6-phosphate|activation of glycolysis through fructose-6-phosphate dph 2015-08-07T11:35:22Z biological_process owl:Class GO:1904538 biolink:NamedThing regulation of glycolytic process through fructose-6-phosphate Any process that modulates the frequency, rate or extent of glycolytic process through fructose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl regulation of glycolysis through fructose-6-phosphate dph 2015-08-07T11:35:10Z biological_process owl:Class GO:2000942 biolink:NamedThing regulation of amylopectin metabolic process Any process that modulates the frequency, rate or extent of amylopectin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of Amylopectin metabolism tt 2011-08-01T02:10:28Z biological_process owl:Class GO:2001193 biolink:NamedThing positive regulation of gamma-delta T cell activation involved in immune response Any process that activates or increases the frequency, rate or extent of gamma-delta T cell activation involved in immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of gamma-delta T-lymphocyte activation during immune response|positive regulation of gamma-delta T-cell activation during immune response|positive regulation of gamma-delta T cell activation during immune response|positive regulation of gamma-delta T lymphocyte activation during immune response yaf 2011-11-03T04:28:48Z biological_process owl:Class GO:0009148 biolink:NamedThing pyrimidine nucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside triphosphate anabolism|pyrimidine nucleoside triphosphate biosynthesis|pyrimidine nucleoside triphosphate synthesis|pyrimidine nucleoside triphosphate formation biological_process owl:Class GO:0071504 biolink:NamedThing cellular response to heparin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T03:34:38Z biological_process owl:Class GO:0006193 biolink:NamedThing ITP catabolic process The chemical reactions and pathways resulting in the breakdown of ITP, inosine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl ITP degradation|ITP hydrolysis|ITP breakdown|ITP catabolism biological_process owl:Class GO:0033133 biolink:NamedThing positive regulation of glucokinase activity Any process that activates or increases the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule. tmpzr1t_l9r_go_relaxed.owl up-regulation of glucokinase activity|stimulation of glucokinase activity|glucokinase activator|upregulation of glucokinase activity|up regulation of glucokinase activity biological_process owl:Class GO:0033131 biolink:NamedThing regulation of glucokinase activity Any process that modulates the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule. tmpzr1t_l9r_go_relaxed.owl glucokinase regulator biological_process owl:Class GO:0045598 biolink:NamedThing regulation of fat cell differentiation Any process that modulates the frequency, rate or extent of adipocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of adipocyte cell differentiation|regulation of adipocyte differentiation biological_process owl:Class GO:2000166 biolink:NamedThing negative regulation of planar cell polarity pathway involved in pericardium morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in pericardium morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:07:39Z biological_process owl:Class GO:1901550 biolink:NamedThing regulation of endothelial cell development Any process that modulates the frequency, rate or extent of endothelial cell development. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-30T12:59:50Z biological_process owl:Class GO:0045601 biolink:NamedThing regulation of endothelial cell differentiation Any process that modulates the frequency, rate or extent of endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051407 biolink:NamedThing glycerone phosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycerone phosphate(out) + phosphate(in) = glycerone phosphate(in) + phosphate(out). tmpzr1t_l9r_go_relaxed.owl dihydroxyacetone-phosphate:inorganic phosphate antiporter activity molecular_function owl:Class GO:0075300 biolink:NamedThing negative regulation of zygospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000449 biolink:NamedThing regulation of CD8-positive, alpha-beta T cell extravasation Any process that modulates the frequency, rate or extent of CD8-positive, alpha-beta T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:41:03Z biological_process owl:Class GO:0021966 biolink:NamedThing corticospinal neuron axon guidance The process in which the migration of an axon growth cone of a neuron that is part of the corticospinal tract is directed from the cerebral cortex layer V to the spinal cord dorsal funiculus in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding biological_process owl:Class GO:1990513 biolink:NamedThing CLOCK-BMAL transcription complex Transcription factor complex which interacts with E-box regulatory elements in target genes, including Period (Per1, Per2, Per3) and Cryptochrome (Cry1, Cry2), to activate their transcription during the daytime. The CRY-PER complexes inhibit CLOCK-BMAL1-driven transcription in a negative feedback loop to generate circadian rhythms. tmpzr1t_l9r_go_relaxed.owl CLOCK/BMAL complex An example of this is CLOCK in human (O15516) in PMID:23229515 (inferred from physical interaction). bhm 2014-10-08T13:10:24Z cellular_component owl:Class GO:1903622 biolink:NamedThing regulation of RNA polymerase III activity Any process that modulates the frequency, rate or extent of RNA polymerase III activity. tmpzr1t_l9r_go_relaxed.owl regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter al 2014-11-19T18:24:29Z biological_process owl:Class GO:0006359 biolink:NamedThing regulation of transcription by RNA polymerase III Any process that modulates the frequency, rate or extent of transcription mediated by RNA ploymerase III. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol III promoter|regulation of transcription from RNA polymerase III promoter biological_process owl:Class GO:1900269 biolink:NamedThing negative regulation of reverse transcription Any process that stops, prevents or reduces the frequency, rate or extent of reverse transcription. tmpzr1t_l9r_go_relaxed.owl inhibition of reverse transcription|downregulation of reverse transcription|down-regulation of reverse transcription|down regulation of reverse transcription tb 2012-04-03T11:13:35Z biological_process owl:Class GO:0002824 biolink:NamedThing positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains Any process that activates or increases the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905750 biolink:NamedThing negative regulation of endosome to plasma membrane protein transport Any process that stops, prevents or reduces the frequency, rate or extent of endosome to plasma membrane protein transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of endosome to plasma membrane protein transport|inhibition of endosome to plasma membrane protein transport|downregulation of endosome to plasma membrane protein transport|down regulation of endosome to plasma membrane protein transport pga 2016-12-09T13:46:21Z biological_process owl:Class GO:1903077 biolink:NamedThing negative regulation of protein localization to plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to plasma membrane. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localization in plasma membrane|inhibition of protein targeting to plasma membrane|negative regulation of protein-plasma membrane targeting|inhibition of protein localisation in plasma membrane|down regulation of protein-plasma membrane targeting|downregulation of protein localization in plasma membrane|down-regulation of protein targeting to plasma membrane|downregulation of protein targeting to plasma membrane|down regulation of protein localisation in plasma membrane|downregulation of protein localization to plasma membrane|negative regulation of establishment of protein localisation in plasma membrane|down regulation of protein localization to plasma membrane|down regulation of protein targeting to plasma membrane|down-regulation of protein-plasma membrane targeting|negative regulation of protein localisation in plasma membrane|negative regulation of establishment of protein localization in plasma membrane|downregulation of protein-plasma membrane targeting|inhibition of protein localization to plasma membrane|down-regulation of protein localization in plasma membrane|negative regulation of protein localization in plasma membrane|inhibition of protein-plasma membrane targeting|downregulation of protein localisation in plasma membrane|inhibition of protein localization in plasma membrane|down-regulation of protein localisation in plasma membrane|negative regulation of establishment of protein localization to plasma membrane|down-regulation of protein localization to plasma membrane|negative regulation of protein targeting to plasma membrane tb 2014-05-29T17:10:16Z GO:1905964|GO:0090005 biological_process owl:Class GO:0070471 biolink:NamedThing uterine smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the uterus. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The uterus is a muscular organ of the female mammal for containing and usually for nourishing the young during development prior to birth. tmpzr1t_l9r_go_relaxed.owl myometrial smooth muscle contraction|myometrium contraction|myometrial contraction biological_process owl:Class GO:0006939 biolink:NamedThing smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length. tmpzr1t_l9r_go_relaxed.owl visceral muscle contraction biological_process owl:Class GO:0001892 biolink:NamedThing embryonic placenta development The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin. tmpzr1t_l9r_go_relaxed.owl fetal placenta development biological_process owl:Class GO:0090709 biolink:NamedThing regulation of timing of plant organ formation Any process that modulates the rate, frequency or extent of plant organ formation at a consistent predetermined time point during development. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-05T12:49:58Z biological_process owl:Class GO:1905428 biolink:NamedThing regulation of plant organ formation Any process that modulates the frequency, rate or extent of plant organ formation. tmpzr1t_l9r_go_relaxed.owl tb 2016-09-07T18:57:47Z biological_process owl:Class GO:0048530 biolink:NamedThing fruit morphogenesis The process in which the anatomical structures of a fruit are generated and organized. A fruit is a reproductive body of a seed plant. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090698 biolink:NamedThing post-embryonic plant morphogenesis The process, occurring after plant embryonic development, by which anatomical structures are generated and organized. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-25T17:08:33Z biological_process owl:Class GO:0000335 biolink:NamedThing negative regulation of transposition, DNA-mediated Any process that stops, prevents, or reduces the frequency, rate or extent of DNA transposition. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA transposition|downregulation of DNA transposition|negative regulation of DNA transposition|down-regulation of DNA transposition|inhibition of DNA transposition biological_process owl:Class GO:1900933 biolink:NamedThing negative regulation of nonadec-1-ene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of nonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of nonadec-1-ene metabolic process|down-regulation of nonadec-1-ene metabolic process|down regulation of nonadec-1-ene metabolic process|negative regulation of nonadec-1-ene metabolism|down regulation of nonadec-1-ene metabolism|inhibition of nonadec-1-ene metabolism|downregulation of nonadec-1-ene metabolic process|down-regulation of nonadec-1-ene metabolism|downregulation of nonadec-1-ene metabolism tt 2012-06-14T03:11:50Z biological_process owl:Class GO:2000674 biolink:NamedThing regulation of type B pancreatic cell apoptotic process Any process that modulates the frequency, rate or extent of type B pancreatic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of pancreatic beta cell apoptosis|regulation of type B pancreatic cell apoptosis|regulation of pancreatic B cell apoptosis pr 2011-05-09T11:51:09Z biological_process owl:Class GO:0019532 biolink:NamedThing oxalate transport The directed movement of oxalate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals. tmpzr1t_l9r_go_relaxed.owl oxalic acid transport|ethanedioate transport|ethanedioic acid transport biological_process owl:Class GO:1901036 biolink:NamedThing positive regulation of L-glutamine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-glutamine import into cell. tmpzr1t_l9r_go_relaxed.owl up regulation of L-glutamine uptake|up-regulation of L-glutamine import|upregulation of L-glutamine import|activation of L-glutamine import|positive regulation of L-glutamine import|positive regulation of L-glutamine uptake|activation of L-glutamine uptake|up-regulation of L-glutamine uptake|up regulation of L-glutamine import|upregulation of L-glutamine uptake al 2012-06-21T07:31:56Z biological_process owl:Class GO:1900584 biolink:NamedThing o-orsellinic acid biosynthetic process The chemical reactions and pathways resulting in the formation of o-orsellinic acid. tmpzr1t_l9r_go_relaxed.owl o-orsellinic acid anabolism|o-orsellinic acid formation|o-orsellinic acid biosynthesis|o-orsellinic acid synthesis di 2012-05-15T06:48:11Z biological_process owl:Class GO:1900582 biolink:NamedThing o-orsellinic acid metabolic process The chemical reactions and pathways involving o-orsellinic acid. tmpzr1t_l9r_go_relaxed.owl o-orsellinic acid metabolism di 2012-05-15T06:47:42Z biological_process owl:Class GO:1902415 biolink:NamedThing regulation of mRNA binding Any process that modulates the frequency, rate or extent of mRNA binding. tmpzr1t_l9r_go_relaxed.owl rb 2013-09-13T18:57:15Z biological_process owl:Class GO:0043960 biolink:NamedThing L-erythro-3-methylmalyl-CoA dehydratase activity Catalysis of the reaction: L-erythro-3-methylmalyl-CoA = mesaconyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070016 biolink:NamedThing armadillo repeat domain binding Binding to an armadillo repeat domain, an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity protein armadillo. Arm-repeat proteins are involved in various processes, including intracellular signalling and cytoskeletal regulation. tmpzr1t_l9r_go_relaxed.owl Arm repeat domain binding|armadillo domain binding|armadillo repeat binding molecular_function owl:Class GO:0047992 biolink:NamedThing hydroxylysine kinase activity Catalysis of the reaction: erythro-5-hydroxy-L-lysine + GTP = 5-phosphonooxy-L-lysine + GDP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl GTP:5-hydroxy-L-lysine O-phosphotransferase activity|hydroxylysine kinase (phosphorylating)|guanosine triphosphate:5-hydroxy-L-lysine O-phosphotransferase activity RHEA:19049|MetaCyc:HYDROXYLYSINE-KINASE-RXN|Reactome:R-HSA-6788611|KEGG_REACTION:R03378|EC:2.7.1.81 molecular_function owl:Class GO:0045219 biolink:NamedThing regulation of FasL production Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL. tmpzr1t_l9r_go_relaxed.owl regulation of FasL anabolism|regulation of FasL biosynthesis|regulation of FasL synthesis|regulation of FasL formation biological_process owl:Class GO:0034721 biolink:NamedThing histone H3-K4 demethylation, trimethyl-H3-K4-specific The modification of histone H3 by the removal of a methyl group from a trimetylated lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3-K4 tridemethylation|H3K4 demethylation (me3) biological_process owl:Class GO:0034720 biolink:NamedThing histone H3-K4 demethylation The modification of histone H3 by the removal of a methyl group from lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl H3K4 demethylation (me1 me2 and me3) biological_process owl:Class GO:0015953 biolink:NamedThing pyrimidine nucleotide interconversion The chemical reactions and pathways by which a pyrimidine nucleotide is synthesized from another pyrimidine nucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006220 biolink:NamedThing pyrimidine nucleotide metabolic process The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine metabolism|pyrimidine nucleotide metabolism|pyrimidine metabolic process biological_process owl:Class GO:1901939 biolink:NamedThing (-)-exo-alpha-bergamotene catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-exo-alpha-bergamotene. tmpzr1t_l9r_go_relaxed.owl (-)-exo-alpha-bergamotene catabolism|(-)-exo-alpha-bergamotene degradation|(-)-exo-alpha-bergamotene breakdown ms 2013-02-18T14:55:27Z biological_process owl:Class GO:1901984 biolink:NamedThing negative regulation of protein acetylation Any process that stops, prevents or reduces the frequency, rate or extent of protein acetylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein amino acid acetylation|downregulation of protein amino acid acetylation|negative regulation of protein amino acid acetylation|down-regulation of protein acetylation|downregulation of protein acetylation|inhibition of protein amino acid acetylation|inhibition of protein acetylation|down regulation of protein acetylation|down regulation of protein amino acid acetylation ss 2013-03-14T00:40:11Z biological_process owl:Class GO:1905423 biolink:NamedThing positive regulation of plant organ morphogenesis Any process that activates or increases the frequency, rate or extent of plant organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl activation of plant organ morphogenesis|upregulation of plant organ morphogenesis|up-regulation of plant organ morphogenesis|up regulation of plant organ morphogenesis tb 2016-09-06T23:00:29Z biological_process owl:Class GO:2001156 biolink:NamedThing regulation of proline catabolic process to glutamate Any process that modulates the frequency, rate or extent of proline catabolic process to glutamate. tmpzr1t_l9r_go_relaxed.owl regulation of proline degradation to glutamate|regulation of proline oxidation|regulation of proline breakdown to glutamate mcc 2011-10-25T08:54:37Z biological_process owl:Class GO:2000214 biolink:NamedThing regulation of proline metabolic process Any process that modulates the frequency, rate or extent of proline metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of proline metabolism mah 2010-11-03T02:45:20Z biological_process owl:Class GO:2000811 biolink:NamedThing negative regulation of anoikis Any process that stops, prevents or reduces the frequency, rate or extent of anoikis. tmpzr1t_l9r_go_relaxed.owl negative regulation of suspension induced apoptosis|negative regulation of detachment induced cell death pr 2011-07-07T09:42:20Z biological_process owl:Class GO:0071934 biolink:NamedThing thiamine transmembrane transport The process in which thiamine is transported across a membrane. Thiamine is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl thiamin transmembrane transport|vitamin B1 transmembrane transport|thiamine membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-09-29T02:59:39Z biological_process owl:Class GO:1905857 biolink:NamedThing positive regulation of pentose-phosphate shunt Any process that activates or increases the frequency, rate or extent of pentose-phosphate shunt. tmpzr1t_l9r_go_relaxed.owl vw 2017-01-23T14:00:26Z biological_process owl:Class GO:0031336 biolink:NamedThing negative regulation of sulfur amino acid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids. tmpzr1t_l9r_go_relaxed.owl negative regulation of sulfur amino acid metabolism|down-regulation of sulfur amino acid metabolic process|downregulation of sulfur amino acid metabolic process|inhibition of sulfur amino acid metabolic process|down regulation of sulfur amino acid metabolic process biological_process owl:Class GO:0070968 biolink:NamedThing pyrroloquinoline quinone binding Binding to pyrroloquinoline quinone, PQQ, the coenzyme or the prosthetic group of certain alcohol dehydrogenases and glucose dehydrogenases. tmpzr1t_l9r_go_relaxed.owl PQQ binding mah 2009-10-02T11:39:13Z molecular_function owl:Class GO:0050736 biolink:NamedThing O-malonyltransferase activity Catalysis of the transfer of a malonyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016420 biolink:NamedThing malonyltransferase activity Catalysis of the transfer of a malonyl (HOOC-CH2-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102003 biolink:NamedThing Delta8-sphingolipid desaturase activity Catalysis of the reaction: phytosphingosine(1+) + O2 + a reduced electron acceptor <=> 4-hydroxy-trans-8-sphingenine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:1.14.19.4-RXN|EC:1.14.19.4 molecular_function owl:Class GO:0052631 biolink:NamedThing sphingolipid delta-8 desaturase activity Catalysis of the formation of a double bond between C8 and C9 of the long chain base of a sphingolipid. For example, sphinganine (d18:0) = 8-sphingenine (d18:1delta8); phytosphinganine (t18:0) = 8-phytosphingenine (t18:1delta8); and 4-sphingenine (18:1delta4) = 4,8-sphingadienine (d18:2delta4,8). tmpzr1t_l9r_go_relaxed.owl RHEA:46268|MetaCyc:RXN-7798 molecular_function owl:Class GO:0006706 biolink:NamedThing steroid catabolic process The chemical reactions and pathways resulting in the breakdown of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. tmpzr1t_l9r_go_relaxed.owl steroid degradation|steroid breakdown|steroid catabolism biological_process owl:Class GO:0045594 biolink:NamedThing positive regulation of cumulus cell differentiation Any process that activates or increases the frequency, rate or extent of ovarian cumulus cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of cumulus cell differentiation|stimulation of cumulus cell differentiation|positive regulation of ovarian cumulus cell differentiation|upregulation of cumulus cell differentiation|up regulation of cumulus cell differentiation|up-regulation of cumulus cell differentiation biological_process owl:Class GO:0045592 biolink:NamedThing regulation of cumulus cell differentiation Any process that modulates the frequency, rate or extent of ovarian cumulus cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of ovarian cumulus cell differentiation biological_process owl:Class GO:0046804 biolink:NamedThing peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide The formation of a protein-protein cross-link between peptidyl-threonine and peptidyl-cysteine by the synthesis of (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide (3-methyl-L-lanthionine sulfoxide), as found in the antibiotic actagardine. tmpzr1t_l9r_go_relaxed.owl peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulphoxide RESID:AA0330 biological_process owl:Class GO:0032297 biolink:NamedThing negative regulation of DNA-dependent DNA replication initiation Any process that stops, prevents, or reduces the frequency, rate or extent of initiation of DNA-dependent DNA replication. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA replication initiation|negative regulation of DNA replication initiation|inhibition of DNA replication initiation|down regulation of DNA replication initiation|down-regulation of DNA replication initiation biological_process owl:Class GO:0102290 biolink:NamedThing beta-amyrin monooxygenase activity Catalysis of the reaction: beta-amyrin + O2 + NADPH + H+ <=> 11alpha-hydroxy-beta-amyrin + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.152|RHEA:31715|MetaCyc:RXN-12681 molecular_function owl:Class GO:0033602 biolink:NamedThing negative regulation of dopamine secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of dopamine. tmpzr1t_l9r_go_relaxed.owl down-regulation of dopamine secretion|downregulation of dopamine secretion|down regulation of dopamine secretion|inhibition of dopamine secretion biological_process owl:Class GO:0010605 biolink:NamedThing negative regulation of macromolecule metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902749 biolink:NamedThing regulation of cell cycle G2/M phase transition Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-05T15:38:15Z biological_process owl:Class GO:1901987 biolink:NamedThing regulation of cell cycle phase transition Any process that modulates the frequency, rate or extent of cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl cell cycle control|regulation of cell cycle transition jl 2013-03-19T16:11:27Z biological_process owl:Class GO:0071579 biolink:NamedThing regulation of zinc ion transport Any process that modulates the frequency, rate or extent of the directed movement of zinc ions (Zn2+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T03:02:15Z biological_process owl:Class GO:0060310 biolink:NamedThing regulation of elastin catabolic process Any process that modulates the rate, frequency or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin. tmpzr1t_l9r_go_relaxed.owl regulation of elastin catabolism|regulation of elastin degradation|regulation of elastin breakdown biological_process owl:Class GO:1903081 biolink:NamedThing negative regulation of C-C chemokine receptor CCR7 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of C-C chemokine receptor CCR7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of CCR7 signaling pathway|negative regulation of C-C chemokine receptor CCR7 signalling pathway|inhibition of C-C chemokine receptor CCR7 signaling pathway|down-regulation of C-C chemokine receptor CCR7 signalling pathway|down regulation of CCR7 signaling pathway|negative regulation of CCR7 signaling pathway|down regulation of C-C chemokine receptor CCR7 signalling pathway|down regulation of C-C chemokine receptor CCR7 signaling pathway|down-regulation of C-C chemokine receptor CCR7 signaling pathway|downregulation of C-C chemokine receptor CCR7 signalling pathway|downregulation of C-C chemokine receptor CCR7 signaling pathway|inhibition of C-C chemokine receptor CCR7 signalling pathway|inhibition of CCR7 signaling pathway|downregulation of CCR7 signaling pathway rl 2014-05-29T18:32:55Z biological_process owl:Class GO:0070100 biolink:NamedThing negative regulation of chemokine-mediated signaling pathway Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of chemokine-mediated signalling pathway biological_process owl:Class GO:0032219 biolink:NamedThing cell wall macromolecule catabolic process involved in cytogamy The chemical reactions and pathways resulting in the breakdown of macromolecules forming part of a cell wall that contribute to cytogamy. tmpzr1t_l9r_go_relaxed.owl cell wall macromolecule catabolic process during cytogamy biological_process owl:Class GO:0102905 biolink:NamedThing valencene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> (+)-valencene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:29511|EC:4.2.3.73|MetaCyc:RXN-8608 molecular_function owl:Class GO:0075197 biolink:NamedThing haustorium neck formation The assembly by the symbiont of a neck-like structure for the purpose of penetration into its host organism. The neck-like structure connects haustorium mother cell and haustorium. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl symbiont haustorium neck formation for entry into host|formation of symbiont haustorium neck for entry into host https://github.com/geneontology/go-ontology/issues/18557 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0035019 biolink:NamedThing somatic stem cell population maintenance Any process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050431 biolink:NamedThing transforming growth factor beta binding Binding to TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. tmpzr1t_l9r_go_relaxed.owl TGFbeta binding|transforming growth factor beta ligand binding to type I receptor|transforming growth factor beta ligand binding to type II receptor|TGF-beta binding molecular_function owl:Class GO:0062152 biolink:NamedThing mRNA (cytidine-5-)-methyltransferase activity Catalysis of the reaction: a cytidine in mRNA + S-adenosyl-L-methionine = a 5-methylcytidine in mRNA + H(+) + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl mRNA (cytosine-5-)-methyltransferase activity RHEA:61464 dph 2019-09-18T14:40:32Z molecular_function owl:Class GO:0008174 biolink:NamedThing mRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090567 biolink:NamedThing reproductive shoot system development The process whose specific outcome is the progression of a reproductive shoot system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tb 2014-04-25T15:42:03Z biological_process owl:Class GO:0032973 biolink:NamedThing amino acid export across plasma membrane The directed movement of amino acids from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl amino acid export|amino acid efflux|amino acid transmembrane export jl 2012-11-14T14:27:40Z GO:0044746 biological_process owl:Class GO:0034180 biolink:NamedThing negative regulation of toll-like receptor 13 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 13 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 13 signalling pathway|negative regulation of TLR13 signaling pathway biological_process owl:Class GO:1905226 biolink:NamedThing regulation of adhesion of symbiont to host epithelial cell Any process that modulates the frequency, rate or extent of adhesion of symbiont to host epithelial cell. tmpzr1t_l9r_go_relaxed.owl pga 2016-06-07T13:15:08Z biological_process owl:Class GO:0071338 biolink:NamedThing positive regulation of hair follicle cell proliferation Any process that activates or increases the rate or extent of hair follicle cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of hair follicle cell proliferation|stimulation of hair follicle cell proliferation|activation of hair follicle cell proliferation|up regulation of hair follicle cell proliferation|up-regulation of hair follicle cell proliferation mah 2009-12-11T11:00:57Z biological_process owl:Class GO:0071336 biolink:NamedThing regulation of hair follicle cell proliferation Any process that modulates the frequency, rate or extent of hair follicle cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T10:53:40Z biological_process owl:Class GO:0032000 biolink:NamedThing positive regulation of fatty acid beta-oxidation Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation. tmpzr1t_l9r_go_relaxed.owl activation of fatty acid beta-oxidation|up-regulation of fatty acid beta-oxidation|up regulation of fatty acid beta-oxidation|stimulation of fatty acid beta-oxidation|upregulation of fatty acid beta-oxidation biological_process owl:Class GO:0046321 biolink:NamedThing positive regulation of fatty acid oxidation Any process that activates or increases the frequency, rate or extent of fatty acid oxidation. tmpzr1t_l9r_go_relaxed.owl up regulation of fatty acid oxidation|upregulation of fatty acid oxidation|activation of fatty acid oxidation|up-regulation of fatty acid oxidation|stimulation of fatty acid oxidation biological_process owl:Class GO:0009728 biolink:NamedThing detection of gibberellic acid stimulus The series of events in which a gibberellic acid stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of gibberellic acid stimulus biological_process owl:Class GO:0009739 biolink:NamedThing response to gibberellin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. tmpzr1t_l9r_go_relaxed.owl response to gibberellin stimulus|response to gibberellic acid stimulus biological_process owl:Class GO:1904303 biolink:NamedThing positive regulation of maternal process involved in parturition Any process that activates or increases the frequency, rate or extent of maternal process involved in parturition. tmpzr1t_l9r_go_relaxed.owl activation of maternal process involved in parturition|upregulation of maternal process involved in parturition|up regulation of maternal process involved in parturition|up-regulation of maternal process involved in parturition sl 2015-06-09T23:01:45Z biological_process owl:Class GO:1904301 biolink:NamedThing regulation of maternal process involved in parturition Any process that modulates the frequency, rate or extent of maternal process involved in parturition. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-09T23:01:32Z biological_process owl:Class GO:0072222 biolink:NamedThing metanephric early distal convoluted tubule development The process whose specific outcome is the progression of the metanephric early distal convoluted tubule over time, from its formation to the mature structure. The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:35:46Z biological_process owl:Class GO:0072243 biolink:NamedThing metanephric nephron epithelium development The process whose specific outcome is the progression of the metanephric nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:29:49Z biological_process owl:Class GO:0042353 biolink:NamedThing fucose biosynthetic process The chemical reactions and pathways resulting in the formation of fucose (6-deoxygalactose). tmpzr1t_l9r_go_relaxed.owl fucose formation|fucose synthesis|fucose anabolism|fucose biosynthesis biological_process owl:Class GO:0000087 biolink:NamedThing mitotic M phase A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl M phase of mitotic cell cycle|M-phase of mitotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0000279 biolink:NamedThing M phase A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase. tmpzr1t_l9r_go_relaxed.owl M-phase Wikipedia:M_phase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0140196 biolink:NamedThing positive regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process Any process that activates or increases the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:13:29Z biological_process owl:Class GO:0099185 biolink:NamedThing postsynaptic intermediate filament cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprised of intermediate filament and their associated proteins in the postsynaptic cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T13:47:30Z biological_process owl:Class GO:0045104 biolink:NamedThing intermediate filament cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl intermediate filament cytoskeleton organization and biogenesis|intermediate filament cytoskeleton organisation biological_process owl:Class GO:0007535 biolink:NamedThing donor selection The process that determines which donor locus a cell uses, in preference to another, in mating type switching. tmpzr1t_l9r_go_relaxed.owl donor preference biological_process owl:Class GO:0045339 biolink:NamedThing farnesyl diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of farnesyl diphosphate. tmpzr1t_l9r_go_relaxed.owl farnesyl diphosphate degradation|farnesyl diphosphate breakdown|farnesyl diphosphate catabolism biological_process owl:Class GO:0016115 biolink:NamedThing terpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. tmpzr1t_l9r_go_relaxed.owl terpenoid degradation|terpenoid breakdown|terpenoid catabolism biological_process owl:Class GO:0045862 biolink:NamedThing positive regulation of proteolysis Any process that activates or increases the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. tmpzr1t_l9r_go_relaxed.owl up regulation of proteolysis|activation of proteolysis|up-regulation of proteolysis|stimulation of proteolysis|upregulation of proteolysis|positive regulation of peptidolysis biological_process owl:Class GO:0150024 biolink:NamedThing oxidised low-density lipoprotein particle clearance The process in which an oxidised low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl ox-LDL particle clearance|oxidized LDL particle clearance|oxLDL particle clearance|oxidized low-density lipoprotein particle clearance|oxidised LDL particle clearance bc 2018-02-05T16:14:05Z biological_process owl:Class GO:1903114 biolink:NamedThing silver ion transmembrane transporter complex A protein complex which is capable of silver ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl An example of this is CusA in E. coli (UniProt symbol P38054) in PMID:11283292 (inferred from direct assay). bhm 2014-06-10T10:00:02Z cellular_component owl:Class GO:0015973 biolink:NamedThing guanosine pentaphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine pentaphosphate formation|guanosine pentaphosphate anabolism|guanosine pentaphosphate biosynthesis|guanosine pentaphosphate (5'-pppGpp-3') biosynthesis|guanosine pentaphosphate synthesis|guanosine pentaphosphate (5'-pppGpp-3') biosynthetic process biological_process owl:Class GO:0034036 biolink:NamedThing purine ribonucleoside bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a purine ribonucleoside bisphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside bisphosphate formation|purine ribonucleoside bisphosphate synthesis|purine ribonucleoside bisphosphate anabolism|purine ribonucleoside bisphosphate biosynthesis biological_process owl:Class GO:0102363 biolink:NamedThing isoscopoletin-O-methyltransferase activity Catalysis of the reaction: isoscopoletin + S-adenosyl-L-methionine <=> scoparone + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13475 molecular_function owl:Class GO:1904698 biolink:NamedThing negative regulation of acinar cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of acinar cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of acinic cell proliferation|down regulation of acinar cell proliferation|negative regulation of acinous cell proliferation|downregulation of acinous cell proliferation|downregulation of acinar cell proliferation|negative regulation of acinic cell proliferation|down-regulation of acinar cell proliferation|downregulation of acinic cell proliferation|inhibition of acinic cell proliferation|down regulation of acinic cell proliferation|down-regulation of acinous cell proliferation|inhibition of acinous cell proliferation|inhibition of acinar cell proliferation|down regulation of acinous cell proliferation sl 2015-09-30T15:19:57Z biological_process owl:Class GO:0060213 biolink:NamedThing positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Any process that increases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length. tmpzr1t_l9r_go_relaxed.owl positive regulation of mRNA deadenylation|positive regulation of nuclear mRNA poly(A) tail shortening|positive regulation of 3' to 5' mRNA deadenylation biological_process owl:Class GO:0102375 biolink:NamedThing 11-oxo-beta-amyrin 30-oxidase activity Catalysis of the reaction: 11-oxo-beta-amyrin + 3 NADPH + 3 O2 + 2 H+ <=> glycyrrhetinic acid + 3 NADP + 4 H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.115|RHEA:35499|MetaCyc:RXN-13506 molecular_function owl:Class GO:0070174 biolink:NamedThing negative regulation of enamel mineralization Any process that stops, prevents, or reduces the frequency, rate or extent of enamel mineralization, the deposition of calcium salts in tooth enamel. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070173 biolink:NamedThing regulation of enamel mineralization Any process that modulates the frequency, rate or extent of enamel mineralization, the deposition of calcium salts in tooth enamel. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003261 biolink:NamedThing cardiac muscle progenitor cell migration to the midline involved in heart field formation The orderly movement of a myocardial progenitor cell toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into myocardial cells of the heart. tmpzr1t_l9r_go_relaxed.owl myocardial progenitor cell midline convergence dph 2009-10-15T01:57:55Z biological_process owl:Class GO:0060975 biolink:NamedThing cardioblast migration to the midline involved in heart field formation The orderly movement of a cardioblast toward the midline to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl cardioblast midline convergence|cardiac progenitor cell midline migration dph 2009-10-06T10:59:36Z biological_process owl:Class GO:0035848 biolink:NamedThing oviduct morphogenesis The process in which anatomical structures of the oviduct are generated and organized. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. tmpzr1t_l9r_go_relaxed.owl fallopian tube morphogenesis bf 2011-05-10T11:01:20Z biological_process owl:Class GO:0043314 biolink:NamedThing negative regulation of neutrophil degranulation Any process that stops, prevents, or reduces the rate of neutrophil degranulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of neutrophil granule exocytosis|down-regulation of neutrophil degranulation|inhibition of neutrophil degranulation|downregulation of neutrophil degranulation|down regulation of neutrophil degranulation biological_process owl:Class GO:0044831 biolink:NamedThing modulation by virus of host cytokine production Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-06T12:49:02Z biological_process owl:Class GO:0072596 biolink:NamedThing establishment of protein localization to chloroplast The directed movement of a protein to a specific location in a chloroplast. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to chloroplast mah 2011-02-14T02:16:13Z biological_process owl:Class GO:0072598 biolink:NamedThing protein localization to chloroplast A process in which a protein is transported to, or maintained at, a location in a chloroplast. tmpzr1t_l9r_go_relaxed.owl protein localisation to chloroplast mah 2011-02-14T02:20:30Z biological_process owl:Class GO:0018155 biolink:NamedThing peptide cross-linking via sn-(2S,6R)-lanthionine The formation of a protein-protein cross-link between peptidyl-serine and peptidyl-cysteine by the synthesis of sn-(2S,6R)-lanthionine (meso-lanthione). tmpzr1t_l9r_go_relaxed.owl RESID:AA0111 biological_process owl:Class GO:0018081 biolink:NamedThing peptide cross-linking via lanthionine or 3-methyl-lanthionine The synthesis of (2R,6R)-lanthionine, sn-(2S,6R)-lanthionine or (2S,3S,6R)-3-methyl-lanthionine, forming an intra-polypeptide cross-link between peptidyl-cysteine, and peptidyl-serine or peptidyl-threonine; dehydration of the serine or threonine residue to the alpha,beta-unsaturated amino acid is the first step; a bond then forms between the ethylene (ethene) group thus formed and the sulfur atom of a cysteine, with the inversion of the configuration of the alpha carbon of the serine or threonine occurring during the process. tmpzr1t_l9r_go_relaxed.owl peptide cross-linking via the thioethers lanthionine or 3-methyl-lanthionine|peptide cross-linking via the thiolethers lanthionine or 3-methyl-lanthionine RESID:AA0111|RESID:AA0112|RESID:AA0110 biological_process owl:Class GO:0060701 biolink:NamedThing negative regulation of ribonuclease activity Any process that decreases the rate, frequency, or extent of ribonuclease activity, catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:49:46Z biological_process owl:Class GO:0051158 biolink:NamedThing L-arabitol catabolic process The chemical reactions and pathways resulting in the breakdown of L-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl L-arabitol breakdown|L-arabitol catabolism|L-arabitol degradation biological_process owl:Class GO:0051157 biolink:NamedThing arabitol catabolic process The chemical reactions and pathways resulting in the breakdown of arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl arabitol degradation|arabitol utilization|arabitol catabolism|arabitol breakdown GO:0019591 biological_process owl:Class GO:0033683 biolink:NamedThing nucleotide-excision repair, DNA incision A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound. tmpzr1t_l9r_go_relaxed.owl nucleic acid cleavage involved in nucleotide-excision repair|DNA incision involved in nucleotide-excision repair biological_process owl:Class GO:0090305 biolink:NamedThing nucleic acid phosphodiester bond hydrolysis The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. tmpzr1t_l9r_go_relaxed.owl nucleic acid cleavage tb 2010-04-07T10:26:30Z biological_process owl:Class GO:0045609 biolink:NamedThing positive regulation of inner ear auditory receptor cell differentiation Any process that activates or increases the frequency, rate or extent of auditory hair cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of auditory hair cell differentiation|stimulation of auditory receptor cell differentiation|activation of auditory receptor cell differentiation|up-regulation of auditory receptor cell differentiation|positive regulation of auditory receptor cell differentiation|upregulation of auditory receptor cell differentiation|up regulation of auditory receptor cell differentiation biological_process owl:Class GO:2000982 biolink:NamedThing positive regulation of inner ear receptor cell differentiation Any process that activates or increases the frequency, rate or extent of inner ear receptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of inner ear hair cell differentiation yaf 2011-08-03T02:38:51Z biological_process owl:Class GO:0003943 biolink:NamedThing N-acetylgalactosamine-4-sulfatase activity Catalysis of the hydrolysis of the 4-sulfate groups of the N-acetyl-D-galactosamine 4-sulfate units of chondroitin sulfate and dermatan sulfate. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine 4-sulfate sulfohydrolase activity|N-acetylgalactosamine-4-sulphatase activity|acetylgalactosamine 4-sulfatase activity|chondroitinsulfatase|N-acetyl-D-galactosamine-4-sulfate 4-sulfohydrolase activity|arylsulfatase B Wikipedia:Arylsulfatase_B|MetaCyc:3.1.6.12-RXN|Reactome:R-HSA-1793207|Reactome:R-HSA-2282889|Reactome:R-HSA-9036065|EC:3.1.6.12|Reactome:R-HSA-1606789 molecular_function owl:Class GO:0035973 biolink:NamedThing aggrephagy Selective degradation of protein aggregates by macroautophagy. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-09T09:53:40Z GO:0035972 biological_process owl:Class GO:0120288 biolink:NamedThing negative regulation of aspartic endopeptidase activity, intramembrane cleaving Any process that decreases the frequency, rate or extent of intramembrane cleaving aspartic-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20341 krc 2020-11-19T22:23:52Z biological_process owl:Class GO:0019806 biolink:NamedThing bromide peroxidase activity Catalysis of the reaction: 2 R-H + 2 bromide + hydrogen peroxide = 2 R-Br + 2 H2O. Enzymes with this activity often accept other halide ions as substrates, including chloride and iodide. tmpzr1t_l9r_go_relaxed.owl bromoperoxidase activity EC:1.11.1.18 molecular_function owl:Class GO:1900768 biolink:NamedThing fonsecin catabolic process The chemical reactions and pathways resulting in the breakdown of fonsecin. tmpzr1t_l9r_go_relaxed.owl fonsecin degradation|fonsecin breakdown|fonsecin catabolism di 2012-06-04T09:21:38Z biological_process owl:Class GO:0046164 biolink:NamedThing alcohol catabolic process The chemical reactions and pathways resulting in the breakdown of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. tmpzr1t_l9r_go_relaxed.owl alcohol catabolism|alcohol breakdown|alcohol degradation biological_process owl:Class GO:0008431 biolink:NamedThing vitamin E binding Binding to a vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. tmpzr1t_l9r_go_relaxed.owl alpha-tocopherol binding|tocopherol binding molecular_function owl:Class GO:0051679 biolink:NamedThing 6-alpha-maltosylglucose metabolic process The chemical reactions and pathways involving 6-alpha-maltosylglucose, also known as isopanose. tmpzr1t_l9r_go_relaxed.owl isopanose metabolic process|isopanose metabolism|6-alpha-maltosylglucose metabolism biological_process owl:Class GO:0003871 biolink:NamedThing 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity Catalysis of the reaction: 5-methyltetrahydropteroyltri-L-glutamate + L-homocysteine = L-methionine + tetrahydropteroyltri-L-glutamate. tmpzr1t_l9r_go_relaxed.owl cobalamin-independent methionine synthase activity|methyltransferase, tetrahydropteroylglutamate-homocysteine transmethylase activity|tetrahydropteroylglutamate-homocysteine transmethylase activity|methionine synthase (cobalamin-independent) activity|homocysteine methylase activity|MetE|tetrahydropteroyltriglutamate methyltransferase activity|5-methyltetrahydropteroyltri-L-glutamate:L-homocysteine S-methyltransferase activity|methyltetrahydropteroylpolyglutamate:homocysteine methyltransferase activity EC:2.1.1.14|KEGG_REACTION:R04405|RHEA:21196|MetaCyc:HOMOCYSMET-RXN molecular_function owl:Class GO:0046082 biolink:NamedThing 5-methylcytosine biosynthetic process The chemical reactions and pathways resulting in the formation of 5-methylcytosine, a methylated base of DNA. tmpzr1t_l9r_go_relaxed.owl 5-methylcytosine formation|5-methylcytosine synthesis|5-methylcytosine biosynthesis|5-methylcytosine anabolism biological_process owl:Class GO:0072528 biolink:NamedThing pyrimidine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyrimidine-containing compound anabolism|pyrimidine and derivative biosynthetic process|pyrimidine-containing compound synthesis|pyrimidine-containing compound biosynthesis|pyrimidine-containing compound formation mah 2011-01-04T03:27:36Z biological_process owl:Class GO:0070113 biolink:NamedThing organellar chromatophore inner membrane The inner, i.e. lumen-facing, of the two lipid bilayers surrounding an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore inner membrane cellular_component owl:Class GO:0070112 biolink:NamedThing organellar chromatophore membrane Either of the lipid bilayers that surround an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore membrane cellular_component owl:Class GO:0015068 biolink:NamedThing glycine amidinotransferase activity Catalysis of the reaction: L-arginine + glycine = L-ornithine + guanidinoacetate. tmpzr1t_l9r_go_relaxed.owl glycine transamidinase activity|arginine-glycine transamidinase activity|arginine-glycine amidinotransferase activity|L-arginine:glycine amidinotransferase activity MetaCyc:GLYCINE-AMIDINOTRANSFERASE-RXN|EC:2.1.4.1|Reactome:R-HSA-71275|RHEA:13201 molecular_function owl:Class GO:0031169 biolink:NamedThing ferrichrome biosynthetic process The chemical reactions and pathways resulting in the formation of a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine. tmpzr1t_l9r_go_relaxed.owl ferrichrome biosynthetic process, peptide modification|ferrichrome synthesis|ferrichrome biosynthesis|ferrichrome anabolism|ferrichrome formation|ferrichrome biosynthetic process, peptide formation GO:0031199|GO:0031200 biological_process owl:Class GO:0019539 biolink:NamedThing hydroxymate-containing siderophore biosynthetic process The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including hydroxamic acid. Hydroxamate is one of the three major chemical groups incorporated into siderophore structures with catechol and a-hydroxycarboxylate, each having a high selectivity for iron(3+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20975 GO:0031197|GO:0031198 biological_process owl:Class GO:1905373 biolink:NamedThing ceramide phosphoethanolamine biosynthetic process The chemical reactions and pathways resulting in the formation of ceramide phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl ceramide phosphoethanolamine synthesis|ceramide phosphoethanolamine formation|ceramide phosphoethanolamine biosynthesis|ceramide phosphoethanolamine anabolism hjd 2016-08-16T17:11:12Z biological_process owl:Class GO:0014713 biolink:NamedThing negative regulation of branchiomeric skeletal muscle development Any process that stops, prevents, or reduces the frequency, rate or extent of branchiomeric skeletal muscle development. Branchiomeric skeletal muscle development is the process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048642 biolink:NamedThing negative regulation of skeletal muscle tissue development Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle tissue development. tmpzr1t_l9r_go_relaxed.owl downregulation of skeletal muscle development|inhibition of skeletal muscle development|down-regulation of skeletal muscle development|down regulation of skeletal muscle development biological_process owl:Class GO:0010750 biolink:NamedThing positive regulation of nitric oxide mediated signal transduction Any process that increases the rate, frequency or extent of nitric oxide mediated signal transduction. Nitric oxide mediated signal transduction is a series of molecular signals mediated by the detection of nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl positive regulation of nitric oxide-mediated signal transduction biological_process owl:Class GO:0099136 biolink:NamedThing chimeric non-reproductive fruiting body development Development of a non-reproductive fruiting body formed by aggregation of cells with different genotypes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099135 biolink:NamedThing chimeric colonial development Development a structure consisting of multiple co-operating unicellular organisms of the same species, involving cells of more that one genotype. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047081 biolink:NamedThing 3-hydroxy-2-methylpyridinecarboxylate dioxygenase activity Catalysis of the reaction: O2 + NADPH + H+ + 3-hydroxy-2-methylpyridine-5-carboxylate = NADP+ + 2-(acetamidomethylene)succinate. tmpzr1t_l9r_go_relaxed.owl methylhydroxypyridine carboxylate dioxygenase activity|3-hydroxy-3-methylpyridinecarboxylate dioxygenase activity|2-methyl-3-hydroxypyridine 5-carboxylic acid dioxygenase activity|3-hydroxy-2-methylpyridine-5-carboxylate,NADPH:oxygen oxidoreductase (decyclizing)|methylhydroxypyridinecarboxylate oxidase activity MetaCyc:1.14.12.4-RXN|RHEA:10864|EC:1.14.13.242 molecular_function owl:Class GO:0071917 biolink:NamedThing triose-phosphate transmembrane transporter activity Enables the transfer of a triose phosphate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-24T10:35:26Z molecular_function owl:Class GO:1904249 biolink:NamedThing negative regulation of age-related resistance Any process that stops, prevents or reduces the extent of age-related resistance. tmpzr1t_l9r_go_relaxed.owl down regulation of flowering-induced resistance|downregulation of senescence-induced resistance|down-regulation of adult seedling resistance|downregulation of mature seedling resistance|down-regulation of ARR|downregulation of age-related resistance|negative regulation of ARR|downregulation of ARR|down regulation of mature seedling resistance|inhibition of senescence-induced resistance|down regulation of age-related resistance|inhibition of flowering-induced resistance|inhibition of ARR|down-regulation of flowering-induced resistance|inhibition of age-related resistance|downregulation of adult seedling resistance|negative regulation of adult seedling resistance|downregulation of flowering-induced resistance|down regulation of ARR|inhibition of mature seedling resistance|negative regulation of mature seedling resistance|down regulation of adult seedling resistance|negative regulation of senescence-induced resistance|down-regulation of age-related resistance|down-regulation of senescence-induced resistance|inhibition of adult seedling resistance|negative regulation of flowering-induced resistance|down regulation of senescence-induced resistance|down-regulation of mature seedling resistance tb 2015-05-19T20:20:05Z biological_process owl:Class GO:1903020 biolink:NamedThing positive regulation of glycoprotein metabolic process Any process that activates or increases the frequency, rate or extent of glycoprotein metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of glycoprotein metabolism|positive regulation of glycoprotein metabolism|up regulation of glycoprotein metabolic process|activation of glycoprotein metabolism|activation of glycoprotein metabolic process|upregulation of glycoprotein metabolic process|up-regulation of glycoprotein metabolic process|upregulation of glycoprotein metabolism|up regulation of glycoprotein metabolism human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) and thus the metabolism of glycoproteins, demonstrated in Figure 4A PMID:23544079, (IDA), the negative regulation term would be applied to this protein rl 2014-05-14T18:44:31Z biological_process owl:Class GO:2000862 biolink:NamedThing negative regulation of estrogen secretion Any process that stops, prevents or reduces the frequency, rate or extent of estrogen secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of oestrogen secretion bf 2011-07-26T08:48:28Z biological_process owl:Class GO:0018695 biolink:NamedThing 4-cresol dehydrogenase (hydroxylating) activity Catalysis of the reaction: 4-cresol + acceptor + H2O = 4-hydroxybenzaldehyde + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 4-cresol:acceptor oxidoreductase (methyl-hydroxylating)|p-cresol-(acceptor) oxidoreductase (hydroxylating) activity|4-cresol dehydrogenase activity|p-cresol methylhydroxylase activity UM-BBD_reactionID:r0272|EC:1.17.9.1|MetaCyc:1.17.99.1-RXN|RHEA:15141 molecular_function owl:Class GO:0008901 biolink:NamedThing ferredoxin hydrogenase activity Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2. tmpzr1t_l9r_go_relaxed.owl H2 oxidizing hydrogenase|hydrogenase (ferredoxin) activity|bidirectional hydrogenase activity|Ni-Fe hydrogenase activity|Ni-Fe-Se hydrogenase activity|hydrogenlyase activity|nickel-iron hydrogenase activity|[Fe] hydrogenase gamma|iron hydrogenase activity|H2 producing hydrogenase|iron-only hydrogenase activity|H(2) producing hydrogenase activity|hydrogen:ferredoxin oxidoreductase activity|H(2) oxidizing hydrogenase activity|[Fe] hydrogenase activity|hydrogen-lyase activity|nickel-iron-selenium hydrogenase activity|hydrogenase activity|uptake hydrogenase activity|nickel hydrogenase activity|hydrogenase I|hydrogenase II EC:1.12.7.2|UM-BBD_enzymeID:e0418|MetaCyc:HYDROG-RXN|RHEA:17445 Note that this function was formerly EC:1.12.1.1, EC:1.12.7.1, EC:1.98.1.1, EC:1.18.3.1 and EC:1.18.99.1. GO:0016950|GO:0016948|GO:0016951|GO:0016949 molecular_function owl:Class GO:0016699 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on hydrogen as donor, iron-sulphur protein as acceptor EC:1.12.7.- GO:0019110|GO:0016736 molecular_function owl:Class GO:1900924 biolink:NamedThing negative regulation of glycine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of glycine import into a cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of glycine import|downregulation of glycine import|negative regulation of glycine import|down regulation of glycine import|inhibition of glycine import al 2012-06-13T07:40:32Z biological_process owl:Class GO:0021538 biolink:NamedThing epithalamus development The progression of the epithalamus over time from its initial formation until its mature state. The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007563 biolink:NamedThing regulation of eclosion Any process that modulates the frequency, rate or extent of the emergence of an insect from a pupa-case or of a larva from an egg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080065 biolink:NamedThing 4-alpha-methyl-delta7-sterol oxidation A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4-alpha-methyl-delta7-sterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy,delta7-sterol + 3 NADP+ + 3 H2O. tmpzr1t_l9r_go_relaxed.owl 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity dhl 2009-04-13T03:41:50Z biological_process owl:Class GO:0034440 biolink:NamedThing lipid oxidation The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904191 biolink:NamedThing positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in meiotic nuclear division Any positive regulation of cyclin-dependent protein serine/threonine kinase activity that is involved in meiotic nuclear division. tmpzr1t_l9r_go_relaxed.owl upregulation of cyclin-dependent protein kinase activity involved in meiotic nuclear division|activation of cyclin-dependent protein kinase activity involved in meiotic nuclear division|positive regulation of CDK activity involved in meiotic nuclear division|stimulation of cyclin-dependent protein kinase activity involved in meiotic nuclear division|up regulation of cyclin-dependent protein kinase activity involved in meiotic nuclear division|positive regulation of cyclin-dependent protein kinase activity involved in meiosis|up-regulation of cyclin-dependent protein kinase activity involved in meiotic nuclear division al 2015-05-06T14:48:52Z biological_process owl:Class GO:0099067 biolink:NamedThing integral component of presynaptic endosome membrane The component of the presynaptic endosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031303 biolink:NamedThing integral component of endosome membrane The component of the endosome membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to endosome membrane cellular_component owl:Class GO:1900148 biolink:NamedThing negative regulation of Schwann cell migration Any process that stops, prevents or reduces the frequency, rate or extent of Schwann cell migration. tmpzr1t_l9r_go_relaxed.owl down regulation of Schwann cell migration|downregulation of Schwann cell migration|down-regulation of Schwann cell migration|inhibition of Schwann cell migration bf 2012-03-06T04:14:55Z biological_process owl:Class GO:0048107 biolink:NamedThing 4-amino-3-isothiazolidinone biosynthetic process The chemical reactions and pathways resulting in the formation of 4-amino-3-isothiazolinone, five-membered saturated heterocyclic ring structures containing a sulfur and a nitrogen in the 1-position and 2-positions respectively. tmpzr1t_l9r_go_relaxed.owl 4-amino-3-isothiazolidinone anabolism|4-amino-3-isothiazolidinone synthesis|4-amino-3-isothiazolidinone formation|4-amino-3-isothiazolidinone biosynthesis biological_process owl:Class GO:0009511 biolink:NamedThing plasmodesmatal endoplasmic reticulum Endoplasmic reticulum found in plasmodesmata, junctions connecting the cytoplasm of adjacent plant cells. tmpzr1t_l9r_go_relaxed.owl plasmodesmatal ER cellular_component owl:Class GO:0005783 biolink:NamedThing endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). tmpzr1t_l9r_go_relaxed.owl ER NIF_Subcellular:sao1036339110|Wikipedia:Endoplasmic_reticulum cellular_component owl:Class GO:0120001 biolink:NamedThing apical plasma membrane urothelial plaque A scallop-shaped plaque, also referred to as an asymmetric unit membrane (AUM), found in the apical plasma membrane of urothelial superficial (umbrella) cells which form a a barrier to the passage of water and soluble toxic compounds found in urine. The plaques are thickened regions of membrane composed of uroplakin transmembrane proteins which form a crystalline array. tmpzr1t_l9r_go_relaxed.owl AUM|asymmetric unit membrane https://github.com/geneontology/go-ontology/issues/12996 krc 2017-02-23T21:10:27Z cellular_component owl:Class GO:0005887 biolink:NamedThing integral component of plasma membrane The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to plasma membrane cellular_component owl:Class GO:0102045 biolink:NamedThing 3-chlorobenzoate-3,4-oxygenase activity Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor <=> 3-chlorobenzoate-cis-3,4-diol + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10422 molecular_function owl:Class GO:1900094 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry Any regulation of transcription from RNA polymerase II promoter that is involved in determination of left/right symmetry. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter, global of determination of left/right symmetry|regulation of transcription from Pol II promoter of determination of left/right asymmetry|regulation of transcription from RNA polymerase II promoter of determination of left/right asymmetry|regulation of global transcription from Pol II promoter of determination of left/right asymmetry|regulation of transcription from RNA polymerase II promoter, global of determination of left/right asymmetry|regulation of transcription from Pol II promoter of determination of left/right symmetry|regulation of gene-specific transcription from RNA polymerase II promoter of determination of left/right symmetry|global transcription regulation from Pol II promoter of determination of left/right asymmetry|regulation of global transcription from Pol II promoter of determination of left/right symmetry|regulation of transcription from RNA polymerase II promoter of determination of left/right symmetry|regulation of gene-specific transcription from RNA polymerase II promoter of determination of left/right asymmetry|global transcription regulation from Pol II promoter of determination of left/right symmetry vk 2012-02-14T10:58:20Z biological_process owl:Class GO:2000809 biolink:NamedThing positive regulation of synaptic vesicle clustering Any process that activates or increases the frequency, rate or extent of synaptic vesicle clustering. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-06T09:50:37Z biological_process owl:Class GO:0007438 biolink:NamedThing oenocyte development The process whose specific outcome is the progression of the oenocyte over time, from its formation to the mature structure. The oenocytes are large secretory cells found in clusters underlying the epidermis of larval abdominal segments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006977 biolink:NamedThing DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the stopping or reduction in rate of the cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell cycle arrest by p53-mediated DNA damage response biological_process owl:Class GO:0030330 biolink:NamedThing DNA damage response, signal transduction by p53 class mediator A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl DNA damage response, activation of p53|p53-mediated DNA damage response|TP53 signaling pathway|p53 signaling pathway GO:0006976 biological_process owl:Class GO:0016011 biolink:NamedThing dystroglycan complex A protein complex that includes alpha- and beta-dystroglycan, which are alternative products of the same gene; the laminin-binding component of the dystrophin-associated glycoprotein complex, providing a link between the subsarcolemmal cytoskeleton (in muscle cells) and the extracellular matrix. Alpha-dystroglycan is an extracellular protein binding to alpha-laminin and to beta-dystroglycan; beta-dystroglycan is a transmembrane protein which binds alpha-dystroglycan and dystrophin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010586 biolink:NamedThing miRNA metabolic process The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. tmpzr1t_l9r_go_relaxed.owl microRNA metabolic process biological_process owl:Class GO:1990381 biolink:NamedThing ubiquitin-specific protease binding Binding to a ubiquitin-specific protease. tmpzr1t_l9r_go_relaxed.owl deubiquitinase binding|deubiquitinating enzyme binding bf 2014-05-19T10:01:53Z molecular_function owl:Class GO:1901385 biolink:NamedThing regulation of voltage-gated calcium channel activity Any process that modulates the frequency, rate or extent of voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of depolarization-activated voltage gated calcium channel activity|regulation of depolarization-activated voltage-gated calcium channel activity|regulation of depolarization-activated calcium channel|regulation of voltage-dependent calcium channel activity|regulation of voltage gated calcium channel activity|regulation of dihydropyridine-sensitive calcium channel activity|regulation of depolarization-activated voltage-gated calcium channel|regulation of voltage-gated calcium ion channel activity|regulation of voltage-sensitive calcium channel vk 2012-10-01T10:34:08Z biological_process owl:Class GO:0043538 biolink:NamedThing regulation of actin phosphorylation Any process that modulates the frequency, rate or extent of the transfer of one or more phosphate groups to an actin molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032806 biolink:NamedThing carboxy-terminal domain protein kinase complex A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5. tmpzr1t_l9r_go_relaxed.owl CTDK complex cellular_component owl:Class GO:1904459 biolink:NamedThing negative regulation of substance P secretion Any process that stops, prevents or reduces the frequency, rate or extent of substance P secretion. tmpzr1t_l9r_go_relaxed.owl down-regulation of substance P secretion|down regulation of substance P secretion|downregulation of substance P secretion|inhibition of substance P secretion sl 2015-07-09T19:32:57Z biological_process owl:Class GO:0006058 biolink:NamedThing mannoprotein catabolic process The chemical reactions and pathways resulting in the breakdown of a mannoprotein, a protein that contains covalently bound mannose residues. tmpzr1t_l9r_go_relaxed.owl mannoprotein catabolism|mannoprotein degradation|mannoprotein breakdown biological_process owl:Class GO:0051603 biolink:NamedThing proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. tmpzr1t_l9r_go_relaxed.owl peptidolysis during cellular protein catabolism|peptidolysis during cellular protein catabolic process|peptidolysis involved in cellular protein catabolic process|peptidolysis involved in cellular protein catabolism|proteolysis during cellular protein catabolic process|proteolysis during cellular protein catabolism biological_process owl:Class GO:0006315 biolink:NamedThing homing of group II introns Lateral transfer of a group II intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron; group II introns are self-splicing introns with a conserved secondary structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006314 biolink:NamedThing intron homing Lateral transfer of an intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034560 biolink:NamedThing bisphenol A hydroxylase A activity Catalysis of the reaction: bisphenol A + NADH + H+ + O2 = 2,2-bis(4-hydroxyphenyl)-1-propanol + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0861|EC:1.14.13.- molecular_function owl:Class GO:0042356 biolink:NamedThing GDP-4-dehydro-D-rhamnose reductase activity Catalysis of the reaction: GDP-6-deoxy-D-mannose + NAD(P)+ = GDP-4-dehydro-6-deoxy-D-mannose + NAD(P)H + H+. In the reverse reaction, a mixture of GDP-D-rhamnose and its C-4 epimer is formed. tmpzr1t_l9r_go_relaxed.owl GDP-6-deoxy-D-mannose:NAD(P)+ 4-oxidoreductase activity|GDP-4-keto-D-rhamnose reductase activity|guanosine diphosphate-4-keto-D-rhamnose reductase activity|GDP-4-keto-6-deoxy-D-mannose reductase activity MetaCyc:GDP-4-DEHYDRO-D-RHAMNOSE-REDUCTASE-RXN|EC:1.1.1.187 molecular_function owl:Class GO:1904320 biolink:NamedThing positive regulation of smooth muscle contraction involved in micturition Any process that activates or increases the frequency, rate or extent of smooth muscle contraction involved in micturition. tmpzr1t_l9r_go_relaxed.owl activation of smooth muscle contraction involved in urination|up-regulation of urinary bladder smooth muscle contraction involved in micturition|activation of smooth muscle contraction involved in micturition|activation of urinary bladder smooth muscle contraction involved in micturition|upregulation of urinary bladder smooth muscle contraction involved in micturition|positive regulation of urinary bladder smooth muscle contraction involved in micturition|up-regulation of smooth muscle contraction involved in micturition|up regulation of urinary bladder smooth muscle contraction involved in micturition|up regulation of smooth muscle contraction involved in urination|up regulation of smooth muscle contraction involved in micturition|up-regulation of smooth muscle contraction involved in urination|upregulation of smooth muscle contraction involved in urination|positive regulation of smooth muscle contraction involved in urination|upregulation of smooth muscle contraction involved in micturition sl 2015-06-10T18:46:23Z biological_process owl:Class GO:0035967 biolink:NamedThing cellular response to topologically incorrect protein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. tmpzr1t_l9r_go_relaxed.owl cellular response to misfolded or unfolded protein bf 2011-08-03T11:44:50Z biological_process owl:Class GO:0016079 biolink:NamedThing synaptic vesicle exocytosis Fusion of intracellular membrane-bounded vesicles with the pre-synaptic membrane of the neuronal cell resulting in release of neurotransmitter into the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045055 biolink:NamedThing regulated exocytosis A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand. tmpzr1t_l9r_go_relaxed.owl regulated secretory pathway biological_process owl:Class GO:0051006 biolink:NamedThing positive regulation of lipoprotein lipase activity Any process that activates or increases the activity of the enzyme lipoprotein lipase. tmpzr1t_l9r_go_relaxed.owl up regulation of lipoprotein lipase activity|activation of lipoprotein lipase activity|stimulation of lipoprotein lipase activity|upregulation of lipoprotein lipase activity|up-regulation of lipoprotein lipase activity biological_process owl:Class GO:0019471 biolink:NamedThing 4-hydroxyproline metabolic process The chemical reactions and pathways involving 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline. The presence of hydroxyproline is essential to produce stable triple helical tropocollagen, hence the problems caused by ascorbate deficiency in scurvy. This unusual amino acid is also present in considerable amounts in the major glycoprotein of primary plant cell walls. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyproline metabolism biological_process owl:Class GO:0052687 biolink:NamedThing (3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (ADP-forming) activity Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + ADP + phosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity KEGG_REACTION:R06396 molecular_function owl:Class GO:0098970 biolink:NamedThing postsynaptic neurotransmitter receptor diffusion trapping The process by which diffusing neurotransmitter receptor becomes trapped at the postsynaptic specialization membrane. This is typically due to interaction with components of the post-synaptic specialization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099036 biolink:NamedThing anchored component of neuronal dense core vesicle membrane The component of the neuronal dense core vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905209 biolink:NamedThing positive regulation of cardiocyte differentiation Any process that activates or increases the frequency, rate or extent of cardiocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of heart cell differentiation|upregulation of heart cell differentiation|positive regulation of cardiac cell differentiation|up-regulation of cardiac cell differentiation|activation of cardiocyte differentiation|positive regulation of heart cell differentiation|upregulation of cardiac cell differentiation|activation of cardiac cell differentiation|upregulation of cardiocyte differentiation|activation of heart cell differentiation|up regulation of cardiocyte differentiation|up-regulation of cardiocyte differentiation|up regulation of heart cell differentiation|up regulation of cardiac cell differentiation bc 2016-06-02T07:20:16Z biological_process owl:Class GO:0060359 biolink:NamedThing response to ammonium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium stimulus. tmpzr1t_l9r_go_relaxed.owl response to ammonia GO:1903717 biological_process owl:Class GO:0002684 biolink:NamedThing positive regulation of immune system process Any process that activates or increases the frequency, rate, or extent of an immune system process. tmpzr1t_l9r_go_relaxed.owl up-regulation of immune system process|up regulation of immune system process|upregulation of immune system process|stimulation of immune system process|activation of immune system process biological_process owl:Class GO:1900630 biolink:NamedThing methanophenazine biosynthetic process The chemical reactions and pathways resulting in the formation of methanophenazine. tmpzr1t_l9r_go_relaxed.owl methanophenazine synthesis|methanophenazine anabolism|methanophenazine formation|methanophenazine biosynthesis tt 2012-05-21T06:12:30Z biological_process owl:Class GO:0003313 biolink:NamedThing heart rudiment development The progression of the heart rudiment over time, from its initial formation to the mature structure. The heart rudiment is a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube. tmpzr1t_l9r_go_relaxed.owl heart cone development dph 2009-10-27T08:32:40Z biological_process owl:Class GO:0097324 biolink:NamedThing melanocyte migration The orderly movement of melanocytes from one site to another, often during the development of a multicellular organism. A melanocyte is a pigment cell derived from the neural crest. It contains melanin-filled pigment granules, which give a brown to black appearance. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-08T10:08:18Z biological_process owl:Class GO:0099017 biolink:NamedThing maintenance of protein localization at cell tip Any process in which localization of a protein is maintained at the cell tip. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location at cell tip dos 2016-06-30T15:17:41Z biological_process owl:Class GO:0045499 biolink:NamedThing chemorepellent activity Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal. tmpzr1t_l9r_go_relaxed.owl chemorepellant activity molecular_function owl:Class GO:0048018 biolink:NamedThing receptor ligand activity The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). tmpzr1t_l9r_go_relaxed.owl vitamin D receptor activator activity|receptor agonist activity|signaling receptor ligand activity|signaling molecule https://github.com/geneontology/go-ontology/issues/14220 mah 2010-09-13T04:51:59Z GO:0071884 molecular_function owl:Class GO:0042362 biolink:NamedThing fat-soluble vitamin biosynthetic process The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. tmpzr1t_l9r_go_relaxed.owl fat-soluble vitamin formation|fat-soluble vitamin biosynthesis|fat-soluble vitamin synthesis|fat-soluble vitamin anabolism biological_process owl:Class GO:0009110 biolink:NamedThing vitamin biosynthetic process The chemical reactions and pathways resulting in the formation of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl vitamin formation|vitamin anabolism|vitamin synthesis|vitamin biosynthesis biological_process owl:Class GO:1902027 biolink:NamedThing positive regulation of cartilage condensation Any process that activates or increases the frequency, rate or extent of cartilage condensation. tmpzr1t_l9r_go_relaxed.owl up-regulation of cartilage condensation|up regulation of cartilage condensation|activation of cartilage condensation|upregulation of cartilage condensation jl 2013-03-28T17:02:46Z biological_process owl:Class GO:2000464 biolink:NamedThing positive regulation of astrocyte chemotaxis Any process that activates or increases the frequency, rate or extent of astrocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T04:43:29Z biological_process owl:Class GO:2000458 biolink:NamedThing regulation of astrocyte chemotaxis Any process that modulates the frequency, rate or extent of astrocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:53:50Z biological_process owl:Class GO:2001045 biolink:NamedThing negative regulation of integrin-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of integrin-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of integrin-mediated signalling pathway bf 2011-08-31T03:49:16Z biological_process owl:Class GO:2001152 biolink:NamedThing negative regulation of renal water transport Any process that stops, prevents or reduces the frequency, rate or extent of renal water transport. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-24T11:37:57Z biological_process owl:Class GO:0018641 biolink:NamedThing 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity Catalysis of the reaction: 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline + O2 + 2 H+ + 2 e- = H2O + 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0048 molecular_function owl:Class GO:0072757 biolink:NamedThing cellular response to camptothecin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a camptothecin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to CPT mah 2012-11-07T12:12:35Z biological_process owl:Class GO:1901563 biolink:NamedThing response to camptothecin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a camptothecin stimulus. tmpzr1t_l9r_go_relaxed.owl response to CPT mah 2012-11-02T15:32:45Z biological_process owl:Class GO:0010639 biolink:NamedThing negative regulation of organelle organization Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. tmpzr1t_l9r_go_relaxed.owl negative regulation of organelle organisation|negative regulation of organelle organization and biogenesis biological_process owl:Class GO:1905608 biolink:NamedThing positive regulation of presynapse assembly Any process that activates or increases the frequency, rate or extent of presynapse assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of presynapse biogenesis|up-regulation of presynapse assembly|up regulation of presynaptic terminal assembly|up regulation of presynapse assembly|up-regulation of presynaptic terminal assembly|positive regulation of presynaptic terminal assembly|upregulation of presynaptic terminal assembly|activation of presynapse biogenesis|upregulation of presynapse assembly|up-regulation of presynapse biogenesis|activation of presynapse assembly|activation of presynaptic terminal assembly|positive regulation of presynapse biogenesis|upregulation of presynapse biogenesis bc 2016-10-27T16:08:28Z biological_process owl:Class GO:1905606 biolink:NamedThing regulation of presynapse assembly Any process that modulates the frequency, rate or extent of presynapse assembly. tmpzr1t_l9r_go_relaxed.owl regulation of presynapse biogenesis|regulation of presynaptic terminal assembly bc 2016-10-27T16:08:13Z biological_process owl:Class GO:0075220 biolink:NamedThing positive regulation of zoospore encystment on host Any process that activates, maintains or increases the frequency, rate or extent of zoospore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001800 biolink:NamedThing negative regulation of type IIb hypersensitivity Any process that stops, prevents, or reduces the rate of type IIb hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl down-regulation of type IIb hypersensitivity|inhibition of type IIb hypersensitivity|downregulation of type IIb hypersensitivity|down regulation of type IIb hypersensitivity biological_process owl:Class GO:1905513 biolink:NamedThing negative regulation of short-term synaptic potentiation Any process that stops, prevents or reduces the frequency, rate or extent of short-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of synaptic facilitation|negative regulation of synaptic facilitation|down-regulation of synaptic facilitation|down regulation of short-term synaptic potentiation|inhibition of short-term synaptic potentiation|down regulation of synaptic facilitation|downregulation of synaptic facilitation|down-regulation of short-term synaptic potentiation|downregulation of short-term synaptic potentiation hjd 2016-09-28T17:40:23Z biological_process owl:Class GO:1900801 biolink:NamedThing cspyrone B1 catabolic process The chemical reactions and pathways resulting in the breakdown of cspyrone B1. tmpzr1t_l9r_go_relaxed.owl cspyrone B1 breakdown|cspyrone B1 catabolism|cspyrone B1 degradation di 2012-06-04T09:50:58Z biological_process owl:Class GO:0032085 biolink:NamedThing regulation of type II site-specific deoxyribonuclease activity Any process that modulates the frequency, rate or extent of a type II restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl regulation of type II restriction endodeoxyribonuclease activity|type II restriction endodeoxyribonuclease regulator|type II restriction enzyme regulator biological_process owl:Class GO:0032072 biolink:NamedThing regulation of restriction endodeoxyribonuclease activity Any process that modulates the frequency, rate or extent of a restriction endodeoxyribonuclease activity, the catalysis of endonucleolytic cleavage of DNA in a site-specific manner, resulting in double-strand breaks. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061906 biolink:NamedThing autophagosome localization Any process in which an autophagosome is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-28T17:27:57Z biological_process owl:Class GO:1990849 biolink:NamedThing vacuolar localization Any process in which the vacuole is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl maintenance of vacuolar localization|maintenance of vacuole location|maintenance of vacuole localization|maintenance of vacuolar location https://github.com/geneontology/go-ontology/issues/22182 mcc 2015-09-10T08:16:02Z biological_process owl:Class GO:0071633 biolink:NamedThing dihydroceramidase activity Catalysis of the reaction: a dihydroceramide + H2O = a fatty acid + dihydrosphingosine. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-11T04:24:12Z molecular_function owl:Class GO:0017040 biolink:NamedThing N-acylsphingosine amidohydrolase activity Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine. tmpzr1t_l9r_go_relaxed.owl acylsphingosine deacylase activity|glycosphingolipid ceramide deacylase EC:3.5.1.23|Reactome:R-HSA-428205|Reactome:R-HSA-1606602|RHEA:20856|Reactome:R-HSA-1606583|MetaCyc:CERAMIDASE-RXN|Reactome:R-HSA-428231 molecular_function owl:Class GO:0103087 biolink:NamedThing methylthiopentylmalate dehydrogenase activity Catalysis of the reaction: 3-(5'-methylthio)pentylmalate <=> H+ + 2-oxo-8-methylthiooctanoate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4171 molecular_function owl:Class GO:0019744 biolink:NamedThing hopanoid metabolic process The chemical reactions and pathways involving hopanoids, pentacyclic sterol-like compounds based on the hopane nucleus. tmpzr1t_l9r_go_relaxed.owl hopanoid metabolism biological_process owl:Class GO:0071335 biolink:NamedThing hair follicle cell proliferation The multiplication or reproduction of hair follicle cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T10:49:53Z biological_process owl:Class GO:0005145 biolink:NamedThing interleukin-14 receptor binding Binding to an interleukin-14 receptor. tmpzr1t_l9r_go_relaxed.owl IL-14|interleukin-14 receptor ligand molecular_function owl:Class GO:0019555 biolink:NamedThing glutamate catabolic process to ornithine The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including ornithine. tmpzr1t_l9r_go_relaxed.owl glutamate degradation to ornithine|glutamate breakdown to ornithine MetaCyc:GLUTORN-PWY biological_process owl:Class GO:0033723 biolink:NamedThing fluoroacetaldehyde dehydrogenase activity Catalysis of the reaction: fluoroacetaldehyde + NAD+ + H2O = fluoroacetate + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl fluoroacetaldehyde:NAD+ oxidoreductase activity RHEA:16677|EC:1.2.1.69 molecular_function owl:Class GO:1902750 biolink:NamedThing negative regulation of cell cycle G2/M phase transition Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl downregulation of cell cycle G2/M phase transition|down-regulation of cell cycle G2/M phase transition|inhibition of cell cycle G2/M phase transition|down regulation of cell cycle G2/M phase transition jl 2014-03-05T15:38:21Z biological_process owl:Class GO:1901988 biolink:NamedThing negative regulation of cell cycle phase transition Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl down regulation of cell cycle transition|inhibition of cell cycle transition|downregulation of cell cycle phase transition|inhibition of cell cycle phase transition|down regulation of cell cycle phase transition|down-regulation of cell cycle phase transition|negative regulation of cell cycle transition|downregulation of cell cycle transition|down-regulation of cell cycle transition jl 2013-03-19T16:11:32Z biological_process owl:Class GO:1904528 biolink:NamedThing positive regulation of microtubule binding Any process that activates or increases the frequency, rate or extent of microtubule binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of microtubule/chromatin interaction|up-regulation of microtubule severing activity|upregulation of microtubule binding|upregulation of microtubule severing activity|up regulation of microtubule binding|up-regulation of microtubule binding|activation of microtubule severing activity|positive regulation of microtubule severing activity|upregulation of microtubule/chromatin interaction|activation of microtubule binding|activation of microtubule/chromatin interaction|positive regulation of microtubule/chromatin interaction|up regulation of microtubule severing activity|up regulation of microtubule/chromatin interaction als 2015-07-30T10:32:36Z biological_process owl:Class GO:0060828 biolink:NamedThing regulation of canonical Wnt signaling pathway Any process that modulates the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt receptor signalling pathway|regulation of Wnt receptor signaling pathway through beta-catenin|regulation of catenin protein nuclear translocation|regulation of catenin import into nucleus|regulation of canonical Wnt receptor signaling pathway|catenin import into nucleus|regulation of canonical Wnt-activated signaling pathway https://github.com/geneontology/go-ontology/issues/13686|https://github.com/geneontology/go-ontology/issues/15268 dph 2009-08-11T01:54:47Z GO:0035411|GO:0035412 biological_process owl:Class GO:2000167 biolink:NamedThing regulation of planar cell polarity pathway involved in neural tube closure Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in neural tube closure. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:08:53Z biological_process owl:Class GO:0033085 biolink:NamedThing negative regulation of T cell differentiation in thymus Any process that stops, prevents, or reduces the frequency, rate or extent of T cell differentiation in the thymus. tmpzr1t_l9r_go_relaxed.owl negative regulation of thymic T cell differentiation|negative regulation of thymocyte cell differentiation|negative regulation of thymocyte differentiation|negative regulation of T cell development in thymus Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:2000220 biolink:NamedThing regulation of pseudohyphal growth Any process that modulates the frequency, rate or extent of pseudohyphal growth. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-03T04:36:56Z biological_process owl:Class GO:0070784 biolink:NamedThing regulation of growth of unicellular organism as a thread of attached cells Any process that modulates the frequency, rate or extent of the process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-07T02:34:59Z biological_process owl:Class GO:0007549 biolink:NamedThing dosage compensation Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Dosage_compensation biological_process owl:Class GO:0040029 biolink:NamedThing regulation of gene expression, epigenetic A process that modulates the frequency, rate or extent of gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. Once established, this regulation may be maintained over many cell divisions. It can also be heritable in the absence of the instigating signal. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22201 biological_process owl:Class GO:0007315 biolink:NamedThing pole plasm assembly Establishment of the specialized cytoplasm found at the poles of the egg. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl GO:0048113 biological_process owl:Class GO:0036157 biolink:NamedThing outer dynein arm Outer arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. Outer dynein arms contain 2-3 heavy chains, two or more intermediate chains and a cluster of 4-8 light chains. Inner and outer dynein arms have different functions in the generation of microtubule-based motility. tmpzr1t_l9r_go_relaxed.owl outer dynein arm complex bf 2012-03-21T01:25:03Z cellular_component owl:Class GO:1902133 biolink:NamedThing (+)-secoisolariciresinol metabolic process The chemical reactions and pathways involving (+)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-secoisolariciresinol metabolism ms 2013-05-21T08:50:04Z biological_process owl:Class GO:0005767 biolink:NamedThing secondary lysosome Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1549842807 cellular_component owl:Class GO:0005764 biolink:NamedThing lysosome A small lytic vacuole that has cell cycle-independent morphology found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Lysosome|NIF_Subcellular:sao585356902 cellular_component owl:Class GO:0038133 biolink:NamedThing ERBB2-ERBB3 signaling pathway A series of molecular signals initiated by binding of a ligand to a ERBB3 receptor on the surface of a cell, followed by transmission of the signal by a heterodimeric complex of ERBB2 and ERBB3. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB3. ERBB3 also has impaired kinase activity and relies on ERBB2 for activation and signal transmission. tmpzr1t_l9r_go_relaxed.owl ERBB2-ERBB3 signalling pathway|HER2-HER3 signaling pathway bf 2012-03-30T11:10:44Z biological_process owl:Class GO:0038129 biolink:NamedThing ERBB3 signaling pathway A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor ERBB3 on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB3 receptors have impaired kinase activity and rely on the kinase activity of the heterodimer partner for activation and signal transmission. tmpzr1t_l9r_go_relaxed.owl receptor tyrosine-protein kinase erbB-3 signaling pathway|HER3 signaling pathway|ERBB3 signalling pathway bf 2012-03-30T10:42:28Z biological_process owl:Class GO:0061098 biolink:NamedThing positive regulation of protein tyrosine kinase activity Any process that increases the rate, frequency, or extent of protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:34:53Z biological_process owl:Class GO:1900687 biolink:NamedThing negative regulation of gerfelin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of gerfelin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of gerfelin synthesis|down-regulation of gerfelin synthesis|downregulation of gerfelin synthesis|down regulation of gerfelin biosynthetic process|downregulation of gerfelin biosynthetic process|down regulation of gerfelin formation|down-regulation of gerfelin anabolism|down regulation of gerfelin synthesis|negative regulation of gerfelin synthesis|inhibition of gerfelin biosynthetic process|downregulation of gerfelin biosynthesis|downregulation of gerfelin anabolism|downregulation of gerfelin formation|down-regulation of gerfelin biosynthesis|down regulation of gerfelin anabolism|down regulation of gerfelin biosynthesis|inhibition of gerfelin biosynthesis|negative regulation of gerfelin anabolism|down-regulation of gerfelin formation|inhibition of gerfelin formation|negative regulation of gerfelin formation|inhibition of gerfelin anabolism|down-regulation of gerfelin biosynthetic process|negative regulation of gerfelin biosynthesis di 2012-05-22T04:50:05Z biological_process owl:Class GO:0048678 biolink:NamedThing response to axon injury Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032693 biolink:NamedThing negative regulation of interleukin-10 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-10 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-10 production|downregulation of interleukin-10 production|negative regulation of interleukin-10 secretion|inhibition of interleukin-10 production|negative regulation of IL-10 production|negative regulation of interleukin-10 biosynthetic process|down-regulation of interleukin-10 production GO:0045081|GO:2001180 biological_process owl:Class GO:0032653 biolink:NamedThing regulation of interleukin-10 production Any process that modulates the frequency, rate, or extent of interleukin-10 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-10 production|regulation of interleukin-10 biosynthetic process|regulation of interleukin-10 secretion GO:0045074|GO:2001179 biological_process owl:Class GO:1904461 biolink:NamedThing ergosteryl 3-beta-D-glucoside metabolic process The chemical reactions and pathways involving ergosteryl 3-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl ergosteryl 3-beta-D-glucoside metabolism mcc 2015-07-09T19:36:19Z biological_process owl:Class GO:1901804 biolink:NamedThing beta-glucoside metabolic process The chemical reactions and pathways involving beta-glucoside. tmpzr1t_l9r_go_relaxed.owl beta-glucoside metabolism yaf 2013-01-22T10:10:21Z biological_process owl:Class GO:0102885 biolink:NamedThing alpha-cuprenene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (-)-alpha-cuprenene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8426|EC:4.2.3.95|RHEA:32027 molecular_function owl:Class GO:0051681 biolink:NamedThing 6-alpha-maltosylglucose catabolic process The chemical reactions and pathways resulting in the breakdown of 6-alpha-maltosylglucose, also known as isopanose. tmpzr1t_l9r_go_relaxed.owl isopanose catabolism|isopanose catabolic process biological_process owl:Class GO:0002608 biolink:NamedThing negative regulation of myeloid dendritic cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl down regulation of myeloid dendritic cell antigen processing and presentation|inhibition of myeloid dendritic cell antigen processing and presentation|down-regulation of myeloid dendritic cell antigen processing and presentation|downregulation of myeloid dendritic cell antigen processing and presentation biological_process owl:Class GO:0005330 biolink:NamedThing dopamine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dopamine(out) + Na+(out) + Cl-(out)= dopamine(in) + Na+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl sodium/dopamine symporter activity|dopamine:sodium:chloride symporter activity|dopamine transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/16054 GO:0005329 molecular_function owl:Class GO:0008504 biolink:NamedThing monoamine transmembrane transporter activity Enables the transfer of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-444160|Reactome:R-HSA-380586|Reactome:R-HSA-372542|Reactome:R-HSA-5660706|Reactome:R-HSA-379393|Reactome:R-HSA-380620 GO:0015201 molecular_function owl:Class GO:0051295 biolink:NamedThing establishment of meiotic spindle localization The cell cycle process in which the directed movement of the meiotic spindle to a specific location in the cell occurs. tmpzr1t_l9r_go_relaxed.owl meiotic spindle positioning|spindle positioning involved in meiotic cell cycle|establishment of meiotic spindle localisation|spindle positioning during meiosis biological_process owl:Class GO:0034387 biolink:NamedThing 4-aminobutyrate:pyruvate transaminase activity Catalysis of the reaction: 4-aminobutanoate + pyruvate = succinate semialdehyde + alanine. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid pyruvate transaminase activity EC:2.6.1.96|RHEA:32263|MetaCyc:RXN-6902 molecular_function owl:Class GO:0003867 biolink:NamedThing 4-aminobutyrate transaminase activity Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid transaminase activity|gamma-aminobutyrate transaminase activity|4-aminobutanoate transaminase activity|aminobutyrate aminotransferase activity|gamma-amino-N-butyrate transaminase activity|aminobutyrate transaminase activity|gamma-aminobutyric acid aminotransferase activity|GABA transferase activity|4-aminobutyrate aminotransferase activity|4-aminobutyric acid aminotransferase activity|gamma-aminobutyrate aminotransaminase activity|GABA transaminase activity|glutamate-succinic semialdehyde transaminase activity|gamma-aminobutyric transaminase activity|beta-alanine aminotransferase|GABA aminotransferase activity Reactome:R-HSA-916855|RHEA:23352|MetaCyc:GABATRANSAM-RXN molecular_function owl:Class GO:0120111 biolink:NamedThing neuron projection cytoplasm All of the contents of a plasma membrane bounded neuron projection, excluding the plasma membrane surrounding the projection. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-01T18:58:12Z cellular_component owl:Class GO:0032838 biolink:NamedThing plasma membrane bounded cell projection cytoplasm All of the contents of a plasma membrane bounded cell projection, excluding the plasma membrane surrounding the projection. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904312 biolink:NamedThing cellular response to gold(3+) Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold(3+) stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T17:41:13Z biological_process owl:Class GO:1904311 biolink:NamedThing response to gold(3+) Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold(3+) stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T17:41:07Z biological_process owl:Class GO:0075251 biolink:NamedThing uredospore formation The process which specific outcome is the formation of an asexual, dikaryotic, often rusty-colored spore, produced in a structure called a uredinium; mostly found in the rust fungus. tmpzr1t_l9r_go_relaxed.owl urediniospore formation|ureidospore formation biological_process owl:Class GO:0043936 biolink:NamedThing asexual sporulation resulting in formation of a cellular spore The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. tmpzr1t_l9r_go_relaxed.owl asexual sporulation resulting in the formation of a viable spore|asexual reproduction resulting in the formation of a cellular spore biological_process owl:Class GO:2001002 biolink:NamedThing positive regulation of xylan catabolic process Any process that activates or increases the frequency, rate or extent of xylan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of xylan catabolism|positive regulation of xylan degradation|positive regulation of xylan breakdown tt 2011-08-08T03:23:22Z biological_process owl:Class GO:2000926 biolink:NamedThing positive regulation of cellodextrin metabolic process Any process that activates or increases the frequency, rate or extent of cellodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellodextrin metabolism tt 2011-08-01T12:39:59Z biological_process owl:Class GO:0051126 biolink:NamedThing negative regulation of actin nucleation Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. tmpzr1t_l9r_go_relaxed.owl down regulation of actin nucleation|down-regulation of actin nucleation|inhibition of actin nucleation|downregulation of actin nucleation biological_process owl:Class GO:1902904 biolink:NamedThing negative regulation of supramolecular fiber organization Any process that stops, prevents or reduces the frequency, rate or extent of fibril organization. tmpzr1t_l9r_go_relaxed.owl inhibition of fibril organisation|inhibition of fibril organization|negative regulation of fibril organisation|downregulation of fibril organization|down-regulation of fibril organization|down regulation of fibril organisation|downregulation of fibril organisation|down regulation of fibril organization|down-regulation of fibril organisation HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to negatively regulate fibrillation of alpha-Syn in vitro rl 2014-04-15T16:46:42Z biological_process owl:Class GO:1904181 biolink:NamedThing positive regulation of membrane depolarization Any process that activates or increases the frequency, rate or extent of membrane depolarization. tmpzr1t_l9r_go_relaxed.owl upregulation of membrane depolarization|up-regulation of membrane depolarization|up regulation of membrane depolarization|activation of membrane depolarization sl 2015-04-29T22:29:31Z biological_process owl:Class GO:1902364 biolink:NamedThing negative regulation of protein localization to spindle pole body Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to spindle pole body. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein localization to spindle pole body|down regulation of protein localisation to spindle pole body|downregulation of protein localization to spindle pole body|inhibition of protein localisation to spindle pole body|downregulation of protein localisation to spindle pole body|negative regulation of protein localisation to spindle pole body|down regulation of protein localization to spindle pole body|inhibition of protein localization to spindle pole body|down-regulation of protein localisation to spindle pole body vw 2013-08-15T16:38:23Z biological_process owl:Class GO:1903465 biolink:NamedThing positive regulation of mitotic cell cycle DNA replication Any process that activates or increases the frequency, rate or extent of mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl activation of DNA replication during S phase involved in mitotic cell cycle|up-regulation of DNA replication involved in S phase involved in mitotic cell cycle|upregulation of DNA replication during S phase involved in mitotic cell cycle|upregulation of DNA replication involved in S-phase involved in mitotic cell cycle|upregulation of mitotic cell cycle DNA replication|positive regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|positive regulation of DNA replication during S phase involved in mitotic cell cycle|activation of mitotic nuclear cell cycle DNA replication|activation of DNA replication involved in S phase involved in mitotic cell cycle|up regulation of DNA replication during S phase involved in mitotic cell cycle|up-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|positive regulation of DNA replication involved in S-phase involved in mitotic cell cycle|activation of nuclear cell cycle DNA replication involved in mitotic cell cycle|up regulation of DNA replication involved in S-phase involved in mitotic cell cycle|up regulation of DNA replication involved in S phase involved in mitotic cell cycle|activation of mitotic cell cycle DNA replication|up-regulation of mitotic cell cycle DNA replication|up-regulation of DNA replication involved in S-phase involved in mitotic cell cycle|up-regulation of mitotic nuclear cell cycle DNA replication|upregulation of mitotic nuclear cell cycle DNA replication|up regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|positive regulation of DNA replication involved in S phase involved in mitotic cell cycle|positive regulation of mitotic nuclear cell cycle DNA replication|upregulation of DNA replication involved in S phase involved in mitotic cell cycle|up regulation of mitotic nuclear cell cycle DNA replication|up regulation of mitotic cell cycle DNA replication|upregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|activation of DNA replication involved in S-phase involved in mitotic cell cycle|up-regulation of DNA replication during S phase involved in mitotic cell cycle vw 2014-09-23T13:38:41Z biological_process owl:Class GO:0036107 biolink:NamedThing 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process The chemical reactions and pathways involving 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate, a precursor of 4-amino-4-deoxy-L-arabinose (L-Ara4N). tmpzr1t_l9r_go_relaxed.owl undecaprenyl phosphate alpha-L-Ara4N metabolism|4-amino-4-deoxy-alpha-L-arabinose undecaprenyl phosphate metabolic process bf 2012-02-06T02:55:42Z biological_process owl:Class GO:0006721 biolink:NamedThing terpenoid metabolic process The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups. tmpzr1t_l9r_go_relaxed.owl terpenoid metabolism biological_process owl:Class GO:0042819 biolink:NamedThing vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxine-5'-phosphate biosynthesis|vitamin B6 formation|vitamin B6 anabolism|vitamin B6 biosynthesis|vitamin B6 synthesis biological_process owl:Class GO:0072525 biolink:NamedThing pyridine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyridine-containing compound anabolism|pyridine-containing compound formation|pyridine-containing compound synthesis|pyridine-containing compound biosynthesis|pyridine and derivative biosynthetic process mah 2011-01-04T03:23:01Z biological_process owl:Class GO:0090282 biolink:NamedThing positive regulation of transcription involved in G2/M transition of mitotic cell cycle Any process that activates or increases the frequency, rate or extent of transcription of target genes that are transcribed as part of the G2/M transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl activation of G2/M-specific transcription in the mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter during G2/M-phase of the mitotic cell cycle|up-regulation of transcription from RNA polymerase II promoter during G2/M transition of the mitotic cell cycle|up-regulation of G2/M-specific transcription in the mitotic cell cycle|activation of transcription from RNA polymerase II promoter during G2/M-phase of the mitotic cell cycle|positive regulation of G2/M-specific transcription in the mitotic cell cycle|up-regulation of transcription involved in G2/M transition of mitotic cell cycle|activation of transcription involved in G2/M transition of mitotic cell cycle tb 2010-02-09T02:13:26Z biological_process owl:Class GO:0033034 biolink:NamedThing positive regulation of myeloid cell apoptotic process Any process that activates or increases the frequency, rate, or extent of myeloid cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of myeloid cell apoptosis|stimulation of myeloid cell apoptosis|up regulation of myeloid cell apoptosis|up-regulation of myeloid cell apoptosis|upregulation of myeloid cell apoptosis|activation of myeloid cell apoptosis biological_process owl:Class GO:0071590 biolink:NamedThing nicotinamide riboside biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide. tmpzr1t_l9r_go_relaxed.owl N-ribosylnicotinamide biosynthetic process|nicotinamide riboside biosynthesis|nicotinamide riboside anabolism|nicotinamide riboside synthesis|nicotinamide riboside formation mah 2010-01-29T11:39:27Z biological_process owl:Class GO:0046495 biolink:NamedThing nicotinamide riboside metabolic process The chemical reactions and pathways involving nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide riboside metabolism|N-ribosylnicotinamide metabolic process biological_process owl:Class GO:1903924 biolink:NamedThing estradiol binding Binding to estradiol. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T00:11:34Z molecular_function owl:Class GO:0005496 biolink:NamedThing steroid binding Binding to a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032869 biolink:NamedThing cellular response to insulin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008250 biolink:NamedThing oligosaccharyltransferase complex A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected. tmpzr1t_l9r_go_relaxed.owl OST complex|oligosaccharyl transferase complex cellular_component owl:Class GO:0050761 biolink:NamedThing depsipeptide metabolic process The chemical reactions and pathways involving depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively. tmpzr1t_l9r_go_relaxed.owl depsipeptide metabolism biological_process owl:Class GO:0072599 biolink:NamedThing establishment of protein localization to endoplasmic reticulum The directed movement of a protein to a specific location in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization to ER|establishment of protein localisation to ER|establishment of protein localisation to endoplasmic reticulum|establishment of protein localization in endoplasmic reticulum mah 2011-02-14T02:23:41Z biological_process owl:Class GO:0060957 biolink:NamedThing endocardial cell fate commitment The commitment of a cell to an endocardial cell fate and its capacity to differentiate into an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:24:29Z biological_process owl:Class GO:0032883 biolink:NamedThing regulation of chitin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chitin. tmpzr1t_l9r_go_relaxed.owl regulation of chitin synthesis|regulation of chitin anabolism|regulation of chitin biosynthesis|regulation of chitin formation biological_process owl:Class GO:0008480 biolink:NamedThing sarcosine dehydrogenase activity Catalysis of the reaction: sarcosine + H2O + electron-transfer flavoprotein = glycine + formaldehyde + reduced electron-transfer flavoprotein. tmpzr1t_l9r_go_relaxed.owl monomethylglycine dehydrogenase activity|sarcosine:(acceptor) oxidoreductase (demethylating)|sarcosine:acceptor oxidoreductase (demethylating)|sarcosine N-demethylase activity KEGG_REACTION:R00611|RHEA:19793|Reactome:R-HSA-6797913|MetaCyc:SARCOSINE-DEHYDROGENASE-RXN|EC:1.5.8.3 Note that this was EC:1.5.99.1. molecular_function owl:Class GO:1905087 biolink:NamedThing positive regulation of bioluminescence Any process that activates or increases the frequency, rate or extent of bioluminescence. tmpzr1t_l9r_go_relaxed.owl up-regulation of bioluminescence|up regulation of bioluminescence|upregulation of bioluminescence|activation of bioluminescence rph 2016-03-29T07:51:27Z biological_process owl:Class GO:1905085 biolink:NamedThing regulation of bioluminescence Any process that modulates the frequency, rate or extent of bioluminescence. tmpzr1t_l9r_go_relaxed.owl rph 2016-03-29T07:51:07Z biological_process owl:Class GO:1903662 biolink:NamedThing L-altrarate metabolic process The chemical reactions and pathways involving L-altrarate. tmpzr1t_l9r_go_relaxed.owl L-altrarate(1-) metabolism jl 2014-11-26T14:34:20Z biological_process owl:Class GO:0019577 biolink:NamedThing aldaric acid metabolic process The chemical reactions and pathways involving aldaric acid, any dicarboxylic acid formed by oxidation of by the terminal groups of an aldose to carboxyl group. tmpzr1t_l9r_go_relaxed.owl aldaric acid metabolism biological_process owl:Class GO:0072303 biolink:NamedThing positive regulation of glomerular metanephric mesangial cell proliferation Any process that increases the frequency, rate or extent of metanephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0072301 biolink:NamedThing regulation of metanephric glomerular mesangial cell proliferation Any process that modulates the frequency, rate or extent of metanephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:2000773 biolink:NamedThing negative regulation of cellular senescence Any process that stops, prevents or reduces the frequency, rate or extent of cellular senescence. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-22T01:57:08Z biological_process owl:Class GO:1901997 biolink:NamedThing negative regulation of indoleacetic acid biosynthetic process via tryptophan Any process that stops, prevents or reduces the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan. tmpzr1t_l9r_go_relaxed.owl downregulation of IAA biosynthetic process via tryptophan|down regulation of indoleacetic acid synthesis via tryptophan|downregulation of indoleacetic acid formation via tryptophan|inhibition of indoleacetic acid anabolism via tryptophan|negative regulation of IAA biosynthetic process via tryptophan|downregulation of indoleacetic acid anabolism via tryptophan|down-regulation of indoleacetic acid anabolism via tryptophan|down-regulation of indoleacetic acid synthesis via tryptophan|down regulation of IAA biosynthetic process via tryptophan|down-regulation of indoleacetic acid biosynthetic process via tryptophan|negative regulation of indoleacetic acid anabolism via tryptophan|inhibition of IAA biosynthetic process via tryptophan|downregulation of indoleacetic acid biosynthetic process via tryptophan|inhibition of indoleacetic acid formation via tryptophan|negative regulation of indoleacetic acid formation via tryptophan|inhibition of indoleacetic acid synthesis via tryptophan|down-regulation of indoleacetic acid formation via tryptophan|downregulation of indoleacetic acid synthesis via tryptophan|down regulation of indoleacetic acid formation via tryptophan|down regulation of indoleacetic acid anabolism via tryptophan|negative regulation of indoleacetic acid synthesis via tryptophan|down regulation of indoleacetic acid biosynthetic process via tryptophan|inhibition of indoleacetic acid biosynthetic process via tryptophan|down-regulation of IAA biosynthetic process via tryptophan tb 2013-03-19T19:14:13Z biological_process owl:Class GO:1901996 biolink:NamedThing regulation of indoleacetic acid biosynthetic process via tryptophan Any process that modulates the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan. tmpzr1t_l9r_go_relaxed.owl regulation of IAA biosynthetic process via tryptophan|regulation of indoleacetic acid anabolism via tryptophan|regulation of indoleacetic acid synthesis via tryptophan|regulation of indoleacetic acid formation via tryptophan tb 2013-03-19T19:14:09Z biological_process owl:Class GO:0002859 biolink:NamedThing negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target. tmpzr1t_l9r_go_relaxed.owl down-regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|inhibition of natural killer cell mediated cytotoxicity directed against tumor cell target|down regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|downregulation of natural killer cell mediated cytotoxicity directed against tumor cell target biological_process owl:Class GO:1903676 biolink:NamedThing positive regulation of cap-dependent translational initiation Any process that activates or increases the frequency, rate or extent of cap-dependent translational initiation. tmpzr1t_l9r_go_relaxed.owl upregulation of cap-dependent translational initiation|up-regulation of cap-dependent translational initiation|activation of cap-dependent translational initiation|up regulation of cap-dependent translational initiation bf 2014-11-27T19:50:39Z biological_process owl:Class GO:1903674 biolink:NamedThing regulation of cap-dependent translational initiation Any process that modulates the frequency, rate or extent of cap-dependent translational initiation. tmpzr1t_l9r_go_relaxed.owl bf 2014-11-27T19:50:23Z biological_process owl:Class GO:2000570 biolink:NamedThing positive regulation of T-helper 2 cell activation Any process that activates or increases the frequency, rate or extent of T-helper 2 cell activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th2 cell activation ebc 2011-04-03T09:14:59Z biological_process owl:Class GO:0047130 biolink:NamedThing saccharopine dehydrogenase (NADP+, L-lysine-forming) activity Catalysis of the reaction: L-saccharopine + H(2)O + NADP(+) = 2-oxoglutarate + L-lysine + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-lysine-alpha-ketoglutarate reductase activity|lysine:alpha-ketoglutarate:TPNH oxidoreductase (epsilon-N-[gultaryl-2]-L-lysine forming)|6-N-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming)|saccharopine (nicotinamide adenine dinucleotide phosphate, lysine-forming) dehydrogenase activity|N6-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming) Reactome:R-HSA-70938|KEGG_REACTION:R00716|RHEA:19373|MetaCyc:1.5.1.8-RXN|EC:1.5.1.8 GO:0010010 molecular_function owl:Class GO:0004753 biolink:NamedThing saccharopine dehydrogenase activity Catalysis of the cleavage of N6-(L-1,3-dicarboxypropyl)-L-lysine to release an amino acid (lysine or glutamate), with the concomitant reduction of an electron acceptor. tmpzr1t_l9r_go_relaxed.owl lysine-ketoglutarate reductase activity|lysine-2-oxoglutarate reductase activity molecular_function owl:Class GO:2000955 biolink:NamedThing negative regulation of cyclodextrin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cyclodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cyclodextrin metabolism tt 2011-08-01T02:22:05Z biological_process owl:Class GO:0052679 biolink:NamedThing terpentetriene synthase activity Catalysis of the reaction: terpentedienyl diphosphate = diphosphate + terpentetriene. tmpzr1t_l9r_go_relaxed.owl terpentedienyl-diphosphate diphosphate-lyase (terpentetriene-forming) activity EC:4.2.3.36|MetaCyc:RXN-9455|RHEA:25617 molecular_function owl:Class GO:1903312 biolink:NamedThing negative regulation of mRNA metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of mRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of mRNA metabolism|inhibition of mRNA metabolic process|down regulation of mRNA metabolic process|inhibition of mRNA metabolism|down-regulation of mRNA metabolic process|downregulation of mRNA metabolism|down-regulation of mRNA metabolism|downregulation of mRNA metabolic process|down regulation of mRNA metabolism vw 2014-08-18T11:52:34Z biological_process owl:Class GO:0015387 biolink:NamedThing potassium:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + H+(out) = K+(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl potassium:hydrogen symporter activity RHEA:28490 molecular_function owl:Class GO:0015079 biolink:NamedThing potassium ion transmembrane transporter activity Enables the transfer of potassium ions (K+) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl potassium uptake permease activity|potassium transporter activity|potassium uptake transmembrane transporter activity RHEA:29463 GO:0022817|GO:0015388 molecular_function owl:Class GO:1900949 biolink:NamedThing positive regulation of isoprene biosynthetic process Any process that activates or increases the frequency, rate or extent of isoprene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of hemiterpene biosynthetic process|up-regulation of 2-methyl-1,3-butadiene biosynthesis|activation of isoprene biosynthetic process|activation of 2-methyl-1,3-butadiene biosynthetic process|up regulation of hemiterpene biosynthetic process|up-regulation of 2-methyl-1,3-butadiene biosynthetic process|positive regulation of hemiterpene biosynthesis|up-regulation of isoprene biosynthetic process|upregulation of hemiterpene biosynthesis|positive regulation of 2-methyl-1,3-butadiene biosynthesis|activation of hemiterpene biosynthesis|upregulation of isoprene biosynthetic process|up-regulation of hemiterpene biosynthesis|up-regulation of hemiterpene biosynthetic process|positive regulation of 2-methyl-1,3-butadiene biosynthetic process|activation of 2-methyl-1,3-butadiene biosynthesis|up regulation of 2-methyl-1,3-butadiene biosynthetic process|up regulation of 2-methyl-1,3-butadiene biosynthesis|activation of hemiterpene biosynthetic process|upregulation of 2-methyl-1,3-butadiene biosynthesis|up regulation of hemiterpene biosynthesis|up regulation of isoprene biosynthetic process|positive regulation of hemiterpene biosynthetic process|upregulation of 2-methyl-1,3-butadiene biosynthetic process tt 2012-06-14T03:21:54Z biological_process owl:Class GO:1900946 biolink:NamedThing positive regulation of isoprene metabolic process Any process that activates or increases the frequency, rate or extent of isoprene metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of isoprene metabolism|activation of 2-methyl-1,3-butadiene metabolism|positive regulation of hemiterpene metabolism|up regulation of 2-methyl-1,3-butadiene metabolic process|activation of 2-methyl-1,3-butadiene metabolic process|activation of isoprene metabolic process|positive regulation of hemiterpene metabolic process|up regulation of hemiterpene metabolism|positive regulation of 2-methyl-1,3-butadiene metabolic process|activation of hemiterpene metabolism|positive regulation of isoprene metabolism|upregulation of isoprene metabolism|up-regulation of 2-methyl-1,3-butadiene metabolism|up-regulation of hemiterpene metabolic process|up-regulation of isoprene metabolic process|up-regulation of 2-methyl-1,3-butadiene metabolic process|activation of isoprene metabolism|activation of hemiterpene metabolic process|upregulation of 2-methyl-1,3-butadiene metabolism|upregulation of hemiterpene metabolic process|upregulation of isoprene metabolic process|upregulation of hemiterpene metabolism|up-regulation of hemiterpene metabolism|upregulation of 2-methyl-1,3-butadiene metabolic process|up regulation of isoprene metabolism|up regulation of hemiterpene metabolic process|up regulation of isoprene metabolic process|positive regulation of 2-methyl-1,3-butadiene metabolism|up regulation of 2-methyl-1,3-butadiene metabolism tt 2012-06-14T03:19:41Z biological_process owl:Class GO:1904759 biolink:NamedThing protein localization to equatorial microtubule organizing center A process in which a protein is transported to, or maintained in, a location within an equatorial microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl protein localisation in equatorial microtubule organizing center|protein localization in equatorial microtubule organizing center|protein localisation to equatorial microtubule organizing center|protein localization to eMTOC mah 2015-10-21T12:37:55Z biological_process owl:Class GO:1905508 biolink:NamedThing protein localization to microtubule organizing center A process in which a protein is transported to, or maintained in, a location within a microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl protein localization in microtubule organizing center|protein localisation in microtubule organizing center|protein localisation to microtubule organizing center mah 2016-09-28T12:32:16Z biological_process owl:Class GO:0000506 biolink:NamedThing glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex An enzyme complex that catalyzes the transfer of GlcNAc from UDP-GlcNAc to an acceptor phosphatidylinositol, the first step in the production of GPI anchors for cell surface proteins. The complex contains PIG-A, PIG-C, PIG-H, PIG-Q, PIG-P, and DPM2 in human, and Eri1p, Gpi1p, Gpi2p, Gpi15p, Gpi19p, and Spt14p in budding yeast. tmpzr1t_l9r_go_relaxed.owl GPI-GnT complex|GPI-N-acetylglucosaminyltransferase complex|GPI-GlcNAc transferase complex Note that this term should not be confused with 'GPI-anchor transamidase complex ; GO:0042765', which represents a distinct complex with a different catalytic activity. cellular_component owl:Class GO:0007208 biolink:NamedThing phospholipase C-activating serotonin receptor signaling pathway The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by serotonin receptor signalling pathway|serotonin receptor, phospholipase C activating pathway|activation of phospholipase C activity by serotonin receptor signaling pathway biological_process owl:Class GO:0007200 biolink:NamedThing phospholipase C-activating G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent increase in the concentration of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|G-protein coupled receptor signaling pathway coupled to IP3 second messenger|G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|PLC-activating GPCR signaling pathway|phospholipase C-activating dopamine receptor signaling pathway|G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|phospholipase C-activating G-protein coupled receptor signaling pathway|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger This term is intended to cover steps in a GPCR signaling pathway both upstream and downstream of phospholipase C (PLC) activity. biological_process owl:Class GO:2000950 biolink:NamedThing positive regulation of xyloglucan metabolic process Any process that activates or increases the frequency, rate or extent of xyloglucan metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of xyloglucan metabolism tt 2011-08-01T02:17:02Z biological_process owl:Class GO:0010219 biolink:NamedThing regulation of vernalization response Any process that modulates the frequency, rate or extent of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904534 biolink:NamedThing negative regulation of telomeric loop disassembly Any process that stops, prevents or reduces the frequency, rate or extent of telomeric loop disassembly. tmpzr1t_l9r_go_relaxed.owl down regulation of telomeric loop disassembly|downregulation of telomeric loop disassembly|inhibition of telomeric loop disassembly|downregulation of T loop disassembly|negative regulation of T loop disassembly|inhibition of T loop disassembly|down-regulation of T loop disassembly|down regulation of T loop disassembly|down-regulation of telomeric loop disassembly nc 2015-07-31T17:15:04Z biological_process owl:Class GO:1904533 biolink:NamedThing regulation of telomeric loop disassembly Any process that modulates the frequency, rate or extent of telomeric loop disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of T loop disassembly nc 2015-07-31T17:14:58Z biological_process owl:Class GO:0032343 biolink:NamedThing aldosterone catabolic process The chemical reactions and pathways resulting in the breakdown of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032341 biolink:NamedThing aldosterone metabolic process The chemical reactions and pathways involving aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance. tmpzr1t_l9r_go_relaxed.owl aldosterone metabolism biological_process owl:Class GO:0160004 biolink:NamedThing poly-ADP-D-ribose modification-dependent protein binding Binding to a protein upon poly-ADP-ribosylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require a poly-ADP-D-ribose post-translational modification: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of the ADP-D-ribose modification. It may be that the PTM causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term. rl 2021-07-12T23:36:00Z molecular_function owl:Class GO:0110057 biolink:NamedThing regulation of blood vessel endothelial cell differentiation Any process that modulates the frequency, rate or extent of blood vessel endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-23T14:32:09Z biological_process owl:Class GO:2000909 biolink:NamedThing regulation of sterol import Any process that modulates the frequency, rate or extent of sterol import. tmpzr1t_l9r_go_relaxed.owl regulation of sterol influx|regulation of sterol uptake bf 2011-07-29T01:25:10Z biological_process owl:Class GO:0032371 biolink:NamedThing regulation of sterol transport Any process that modulates the frequency, rate or extent of the directed movement of sterols into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903025 biolink:NamedThing regulation of RNA polymerase II regulatory region sequence-specific DNA binding Any process that modulates the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding. tmpzr1t_l9r_go_relaxed.owl dph 2014-05-15T17:55:54Z biological_process owl:Class GO:2000677 biolink:NamedThing regulation of transcription regulatory region DNA binding Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-09T03:28:11Z biological_process owl:Class GO:0106244 biolink:NamedThing eupatolide synthase activity Catalysis of the reaction: 8beta-hydroxygermacra-1(10),4,11(13)-trien-12-oate + O2 + reduced [NADPH--hemoprotein reductase] = eupatolide + 2 H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:57972|EC:1.14.14.169 hjd 2019-12-20T14:50:15Z molecular_function owl:Class GO:0102183 biolink:NamedThing avenastenone reductase activity Catalysis of the reaction: avenastenone + NADPH + H+ <=> avenasterol + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11939 molecular_function owl:Class GO:1903620 biolink:NamedThing positive regulation of transdifferentiation Any process that activates or increases the frequency, rate or extent of transdifferentiation. tmpzr1t_l9r_go_relaxed.owl activation of transdifferentiation|up regulation of transdifferentiation|up-regulation of transdifferentiation|upregulation of transdifferentiation jl 2014-11-19T11:25:14Z biological_process owl:Class GO:1903869 biolink:NamedThing negative regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity Any process that stops, prevents or reduces the frequency, rate or extent of methylenetetrahydrofolate reductase (NAD(P)H) activity. tmpzr1t_l9r_go_relaxed.owl inhibition of methylenetetrahydrofolate reductase (NADPH(2)) activity|down-regulation of MetF|downregulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|inhibition of 5,10-methylenetetrahydrofolate reductase (FADH) activity|downregulation of N5,10-methylenetetrahydrofolate reductase activity|down-regulation of N5,10-methylenetetrahydrofolate reductase activity|negative regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|inhibition of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|down-regulation of 5,10-CH(2)-H(4)folate reductase activity|downregulation of 5,10-CH2-H4folate reductase activity|down regulation of 5,10-CH2-H4folate reductase activity|down regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|downregulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|negative regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|downregulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|inhibition of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|down regulation of N5,N10-methylenetetrahydrofolate reductase activity|down-regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|down regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|negative regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|downregulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|negative regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|inhibition of N5,10-methylenetetrahydrofolate reductase activity|inhibition of N5,N10-methylenetetrahydrofolate reductase activity|down-regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|negative regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|inhibition of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|negative regulation of methylenetetrahydrofolate reductase [NAD(P)H]|down-regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|downregulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|negative regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|downregulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|inhibition of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|downregulation of methylenetetrahydrofolate reductase (NADPH2)|negative regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|negative regulation of N5,N10-methylenetetrahydrofolate reductase activity|down regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|down regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|inhibition of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|down-regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|down regulation of methylenetetrahydrofolate reductase (NADPH2)|negative regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|negative regulation of 5,10-CH(2)-H(4)folate reductase activity|inhibition of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|down-regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|downregulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|down regulation of 5,10-CH(2)-H(4)folate reductase activity|down regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|negative regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|negative regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|down-regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|inhibition of 5-methyltetrahydrofolate:NAD oxidoreductase activity|down-regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|negative regulation of N5,10-methylenetetrahydrofolate reductase activity|down regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|down regulation of MetF|inhibition of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|down regulation of N5,10-methylenetetrahydrofolate reductase activity|down-regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|down-regulation of methylenetetrahydrofolate reductase (NADPH2)|down-regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|downregulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|down-regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|downregulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|downregulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|down-regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|negative regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|down-regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|down regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|negative regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|inhibition of methylenetetrahydrofolate reductase [NAD(P)H]|negative regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|downregulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|inhibition of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|downregulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|down regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|inhibition of 5,10-CH(2)-H(4)folate reductase activity|down regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|inhibition of methylenetetrahydrofolate reductase (NADPH2)|downregulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|down-regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|down-regulation of 5,10-CH2-H4folate reductase activity|inhibition of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|inhibition of 5,10-CH2-H4folate reductase activity|negative regulation of MetF|downregulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|down-regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|down-regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|inhibition of methylenetetrahydrofolate reductase (NAD(P)H) activity|inhibition of 5,10-methylenetetrahydropteroylglutamate reductase activity|down-regulation of N5,N10-methylenetetrahydrofolate reductase activity|negative regulation of 5,10-CH2-H4folate reductase activity|inhibition of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|inhibition of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|negative regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|down-regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|down-regulation of methylenetetrahydrofolate reductase [NAD(P)H]|down regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|downregulation of 5,10-CH(2)-H(4)folate reductase activity|downregulation of methylenetetrahydrofolate reductase [NAD(P)H]|down regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|down regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|down regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|negative regulation of methylenetetrahydrofolate reductase (NADPH2)|down regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|down regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|downregulation of MetF|inhibition of MetF|downregulation of N5,N10-methylenetetrahydrofolate reductase activity|negative regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|downregulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|downregulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|down regulation of methylenetetrahydrofolate reductase [NAD(P)H]|down regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity rph 2015-02-05T13:26:25Z biological_process owl:Class GO:1903868 biolink:NamedThing regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity Any process that modulates the frequency, rate or extent of methylenetetrahydrofolate reductase (NAD(P)H) activity. tmpzr1t_l9r_go_relaxed.owl regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|regulation of methylenetetrahydrofolic acid reductase activity|regulation of methylenetetrahydrofolate reductase (NADPH2)|regulation of methylenetetrahydrofolate reductase activity|regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|regulation of 5,10-CH(2)-H(4)folate reductase activity|regulation of N5,10-methylenetetrahydrofolate reductase activity|regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|regulation of MTHFR activity|regulation of methylenetetrahydrofolate reductase [NAD(P)H]|regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|regulation of N(5),N(10)-methylenetetrahydrofolate reductase activity|regulation of N5,N10-methylenetetrahydrofolate reductase activity|regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|regulation of 5,10-CH2-H4folate reductase activity|regulation of 5,10-methylenetetrahydrofolate reductase activity|regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|regulation of 5,10-methylenetetrahydrofolic acid reductase activity|regulation of N(5,10)-methylenetetrahydrofolate reductase activity|regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|regulation of MetF rph 2015-02-05T13:26:14Z biological_process owl:Class GO:0045542 biolink:NamedThing positive regulation of cholesterol biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol. tmpzr1t_l9r_go_relaxed.owl up-regulation of cholesterol biosynthetic process|upregulation of cholesterol biosynthetic process|positive regulation of cholesterol biosynthesis|positive regulation of cholesterol anabolism|up regulation of cholesterol biosynthetic process|positive regulation of cholesterol formation|activation of cholesterol biosynthetic process|stimulation of cholesterol biosynthetic process|positive regulation of cholesterol synthesis biological_process owl:Class GO:1901526 biolink:NamedThing positive regulation of mitophagy Any process that activates or increases the frequency, rate or extent of mitophagy. tmpzr1t_l9r_go_relaxed.owl up-regulation of macromitophagy|upregulation of macromitophagy|positive regulation of macromitophagy|activation of macromitophagy|up regulation of macromitophagy krc 2012-10-22T16:56:57Z biological_process owl:Class GO:0099168 biolink:NamedThing extrinsic component of postsynaptic specialization membrane of symmetric synapse The component of the postsynaptic specialization membrane of a symmetric synapse consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-10T12:00:26Z cellular_component owl:Class GO:1901283 biolink:NamedThing 5,6,7,8-tetrahydromethanopterin metabolic process The chemical reactions and pathways involving 5,6,7,8-tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydromethanopterin metabolism yaf 2012-08-17T15:32:33Z biological_process owl:Class GO:2001117 biolink:NamedThing tetrahydromethanopterin metabolic process The chemical reactions and pathways involving a tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl tetrahydromethanopterin metabolism jl 2011-10-11T12:13:15Z biological_process owl:Class GO:0050070 biolink:NamedThing lysolecithin acylmutase activity Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine = 2-acyl-sn-glycero-3-phosphocholine. tmpzr1t_l9r_go_relaxed.owl lysolecithin migratase activity|lysolecithin 2,3-acylmutase activity EC:5.4.1.1|KEGG_REACTION:R03334|MetaCyc:LYSOLECITHIN-ACYLMUTASE-RXN|RHEA:24356 molecular_function owl:Class GO:0106289 biolink:NamedThing negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA Any process that stops, prevents, or reduces the frequency, rate or extent of deadenylation-dependent decapping of nuclear-transcribed mRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2020-08-13T17:12:33Z biological_process owl:Class GO:0045489 biolink:NamedThing pectin biosynthetic process The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. tmpzr1t_l9r_go_relaxed.owl pectin biosynthesis|pectin formation|pectin anabolism|pectin synthesis biological_process owl:Class GO:0000271 biolink:NamedThing polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl polysaccharide synthesis|glycan biosynthetic process|polysaccharide biosynthesis|polysaccharide anabolism|glycan biosynthesis|polysaccharide formation biological_process owl:Class GO:1903489 biolink:NamedThing positive regulation of lactation Any process that activates or increases the frequency, rate or extent of lactation. tmpzr1t_l9r_go_relaxed.owl activation of lactation|up-regulation of lactation|up regulation of lactation|upregulation of lactation mr 2014-09-24T14:44:30Z biological_process owl:Class GO:0051047 biolink:NamedThing positive regulation of secretion Any process that activates or increases the frequency, rate or extent of the controlled release of a substance from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl stimulation of secretion|up-regulation of secretion|up regulation of secretion|upregulation of secretion|activation of secretion biological_process owl:Class GO:1904509 biolink:NamedThing negative regulation of protein localization to basolateral plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to basolateral plasma membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein localisation in basolateral plasma membrane|inhibition of protein localization to basolateral plasma membrane|downregulation of protein localisation in basolateral plasma membrane|down-regulation of protein localization in basolateral plasma membrane|negative regulation of protein localization in basolateral plasma membrane|down regulation of protein localisation to basolateral plasma membrane|down-regulation of protein localization to basolateral plasma membrane|down-regulation of protein localisation to basolateral plasma membrane|downregulation of protein localization to basolateral plasma membrane|down regulation of protein localization to basolateral plasma membrane|downregulation of protein localization in basolateral plasma membrane|down regulation of protein localisation in basolateral plasma membrane|down regulation of protein localization in basolateral plasma membrane|inhibition of protein localisation in basolateral plasma membrane|negative regulation of protein localisation in basolateral plasma membrane|negative regulation of protein localisation to basolateral plasma membrane|downregulation of protein localisation to basolateral plasma membrane|inhibition of protein localization in basolateral plasma membrane|inhibition of protein localisation to basolateral plasma membrane kmv 2015-07-24T17:56:32Z biological_process owl:Class GO:0015095 biolink:NamedThing magnesium ion transmembrane transporter activity Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-442661|Reactome:R-HSA-5339538|Reactome:R-HSA-5336466|Reactome:R-HSA-5339528|Reactome:R-HSA-5336454|RHEA:29827|Reactome:R-HSA-5336453 molecular_function owl:Class GO:0007079 biolink:NamedThing mitotic chromosome movement towards spindle pole The cell cycle process in which the directed movement of chromosomes from the center of the spindle towards the spindle poles occurs. This mediates by the shortening of microtubules attached to the chromosomes, during mitosis. tmpzr1t_l9r_go_relaxed.owl chromosome movement towards spindle pole during mitosis|chromosome migration to spindle pole during mitosis|mitotic chromosome movement|mitotic sister chromosome movement towards spindle pole|sister chromosome movement towards spindle pole during mitosis|mitotic chromosome movement to spindle pole GO:0007082 biological_process owl:Class GO:0051305 biolink:NamedThing chromosome movement towards spindle pole The directed movement of chromosomes in the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes. tmpzr1t_l9r_go_relaxed.owl chromosome migration to spindle pole|chromosome movement to spindle pole|chromosome movement biological_process owl:Class GO:0031492 biolink:NamedThing nucleosomal DNA binding Binding to the DNA portion of a nucleosome. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031491 biolink:NamedThing nucleosome binding Binding to a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047277 biolink:NamedThing globoside alpha-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: N-acetyl-D-galactosaminyl-(1,3)-D-galactosyl-(1,4)-D-galactosyl-(1,4)-D-glucosylceramide + UDP-N-acetylgalactosamine = N-acetyl-D-galactosaminyl-N-acetyl-D-galactosaminyl-(1,3)-D-galactosyl-(1,4)-D-galactosyl-(1,4)-D-glucosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-galactosamine:N-acetyl-D-galactosaminyl-1,3-D-galactosyl-1,4-D-galactosyl-1,4-D-glucosylceramide alpha-N-acetyl-D-galactosaminyltransferase activity|Forssman synthase activity|uridine diphosphoacetylgalactosamine-globoside alpha-acetylgalactosaminyltransferase activity|globoside acetylgalactosaminyltransferase activity EC:2.4.1.88|RHEA:22164|MetaCyc:2.4.1.88-RXN molecular_function owl:Class GO:0050095 biolink:NamedThing methionine decarboxylase activity Catalysis of the reaction: L-methionine + H(+) = 3-methylthiopropanamine + CO(2). tmpzr1t_l9r_go_relaxed.owl L-methionine carboxy-lyase activity|L-methionine carboxy-lyase (3-methylthiopropanamine-forming)|L-methionine decarboxylase activity MetaCyc:METHIONINE-DECARBOXYLASE-RXN|KEGG_REACTION:R00656|EC:4.1.1.57|RHEA:17757 molecular_function owl:Class GO:1903637 biolink:NamedThing negative regulation of protein insertion into mitochondrial outer membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein insertion into mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial outer membrane protein import|down-regulation of protein import into mitochondrial outer membrane|down regulation of protein import into mitochondrial outer membrane|inhibition of mitochondrial outer membrane protein import|down-regulation of protein insertion into mitochondrial outer membrane|downregulation of protein import into mitochondrial outer membrane|downregulation of protein transport into mitochondrial outer membrane|inhibition of protein import into mitochondrial outer membrane|down-regulation of protein transport into mitochondrial outer membrane|inhibition of protein insertion into mitochondrial outer membrane|inhibition of protein transport into mitochondrial outer membrane|down regulation of mitochondrial outer membrane protein import|down regulation of protein insertion into mitochondrial outer membrane|down-regulation of mitochondrial outer membrane protein import|down regulation of protein transport into mitochondrial outer membrane|downregulation of protein insertion into mitochondrial outer membrane|downregulation of mitochondrial outer membrane protein import|negative regulation of protein import into mitochondrial outer membrane|negative regulation of protein transport into mitochondrial outer membrane pga 2014-11-20T15:54:53Z biological_process owl:Class GO:0010823 biolink:NamedThing negative regulation of mitochondrion organization Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a mitochondrion. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrion organisation biological_process owl:Class GO:0030653 biolink:NamedThing beta-lactam antibiotic metabolic process The chemical reactions and pathways involving a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins. tmpzr1t_l9r_go_relaxed.owl beta-lactam antibiotic metabolism biological_process owl:Class GO:0003099 biolink:NamedThing positive regulation of the force of heart contraction by chemical signal Any process which increases the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine. tmpzr1t_l9r_go_relaxed.owl positive regulation of the force of heart muscle contraction by chemical signal biological_process owl:Class GO:0071109 biolink:NamedThing superior temporal gyrus development The process whose specific outcome is the progression of the superior temporal gyrus over time, from its formation to the mature structure. The superior temporal gyrus is a portion of the cerebral cortex that extends from the lateral sulcus to the superior temporal sulcus. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-12T02:19:23Z biological_process owl:Class GO:0035541 biolink:NamedThing negative regulation of SNARE complex disassembly Any process that decreases the frequency, rate or extent of disassembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-10T01:42:47Z biological_process owl:Class GO:0045928 biolink:NamedThing negative regulation of juvenile hormone metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving juvenile hormone. tmpzr1t_l9r_go_relaxed.owl down-regulation of juvenile hormone metabolic process|down regulation of juvenile hormone metabolic process|downregulation of juvenile hormone metabolic process|inhibition of juvenile hormone metabolic process|negative regulation of juvenile hormone metabolism biological_process owl:Class GO:0097448 biolink:NamedThing spine mat A configuration of neuron spines found on ciliary ganglion neurons in the embryonic and adult brain consisting of patches of closely spaced spines lying flat against the soma. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao2128156969 pr 2012-12-17T12:34:16Z cellular_component owl:Class GO:1900090 biolink:NamedThing positive regulation of inositol biosynthetic process Any process that activates or increases the frequency, rate or extent of inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of vitamin Bh biosynthetic process|positive regulation of inositol synthesis|activation of inositol formation|up regulation of vitamin Bh biosynthesis|activation of myo-inositol biosynthesis|activation of inositol anabolism|upregulation of myo-inositol biosynthetic process|up-regulation of myo-inositol biosynthetic process|up-regulation of inositol formation|up-regulation of vitamin Bh biosynthetic process|activation of inositol biosynthetic process|positive regulation of vitamin Bh biosynthesis|up regulation of vitamin Bh biosynthetic process|up regulation of inositol biosynthetic process|up regulation of inositol anabolism|upregulation of inositol biosynthetic process|up-regulation of inositol biosynthesis|upregulation of inositol synthesis|upregulation of vitamin Bh biosynthetic process|up regulation of inositol biosynthesis|positive regulation of vitamin Bh biosynthetic process|positive regulation of inositol formation|activation of myo-inositol biosynthetic process|up regulation of myo-inositol biosynthetic process|activation of inositol synthesis|up-regulation of myo-inositol biosynthesis|upregulation of inositol anabolism|up-regulation of inositol anabolism|up-regulation of vitamin Bh biosynthesis|positive regulation of inositol anabolism|up regulation of inositol formation|upregulation of inositol biosynthesis|upregulation of vitamin Bh biosynthesis|upregulation of inositol formation|upregulation of myo-inositol biosynthesis|up-regulation of inositol biosynthetic process|positive regulation of inositol biosynthesis|up regulation of inositol synthesis|activation of vitamin Bh biosynthesis|positive regulation of myo-inositol biosynthesis|up regulation of myo-inositol biosynthesis|activation of inositol biosynthesis|up-regulation of inositol synthesis|positive regulation of myo-inositol biosynthetic process dhl 2012-02-08T06:27:31Z biological_process owl:Class GO:0030071 biolink:NamedThing regulation of mitotic metaphase/anaphase transition Any process that modulates the frequency, rate or extent of the cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the activation of the anaphase promoting complex by Cdc20/Sleepy homolog which results in the degradation of Securin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010760 biolink:NamedThing negative regulation of macrophage chemotaxis Any process that decreases the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010758 biolink:NamedThing regulation of macrophage chemotaxis Any process that modulates the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043648 biolink:NamedThing dicarboxylic acid metabolic process The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl dicarboxylate metabolic process|dicarboxylic acid metabolism|dicarboxylate metabolism biological_process owl:Class GO:0047503 biolink:NamedThing (-)-borneol dehydrogenase activity Catalysis of the reaction: (-)-borneol + NAD(+) = (1S,4S)-camphor + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (-)-borneol:NAD+ oxidoreductase activity KEGG_REACTION:R02945|EC:1.1.1.227|MetaCyc:--BORNEOL-DEHYDROGENASE-RXN|RHEA:22128 molecular_function owl:Class GO:0047749 biolink:NamedThing cholestanetriol 26-monooxygenase activity Catalysis of the reaction: 5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol + NADPH + O2 = 5-beta-cholestane-3-alpha,7-alpha,12-alpha,26-tetraol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cholestanetriol 26-hydroxylase activity|CYP27A1|5beta-cholestane-3alpha,7alpha,12alpha-triol hydroxylase activity|cholesterol 27-hydroxylase activity|CYP27A|sterol 27-hydroxylase activity|5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol hydroxylase activity|5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol 26-hydroxylase activity|5beta-cholestane-3alpha,7alpha,12alpha-triol,NADPH:oxygen oxidoreductase (26-hydroxylating)|cytochrome P450 27A1' activity|sterol 26-hydroxylase activity|5beta-cholestane-3alpha,7alpha,12alpha-triol 26-hydroxylase activity EC:1.14.15.15|RHEA:14373|MetaCyc:CHOLESTANETRIOL-26-MONOOXYGENASE-RXN molecular_function owl:Class GO:0061499 biolink:NamedThing outer plaque of mitotic spindle pole body One of three laminate structures that form the mitotic spindle pole body; the outer plaque is in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-11T09:18:43Z cellular_component owl:Class GO:0005824 biolink:NamedThing outer plaque of spindle pole body One of three laminate structures that form the spindle pole body; the outer plaque is in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009927 biolink:NamedThing histidine phosphotransfer kinase activity Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15611 molecular_function owl:Class GO:0060089 biolink:NamedThing molecular transducer activity A compound molecular function in which an effector function is controlled by one or more regulatory components. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099130 biolink:NamedThing estrogen binding Binding to an estrogen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042562 biolink:NamedThing hormone binding Binding to an hormone, a naturally occurring substance secreted by specialized cells that affect the metabolism or behavior of cells possessing functional receptors for the hormone. Hormones may be produced by the same, or different, cell as express the receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902820 biolink:NamedThing 1-undecene metabolic process The chemical reactions and pathways involving 1-undecene. tmpzr1t_l9r_go_relaxed.owl 1-undecene metabolism tt 2014-03-31T02:50:48Z biological_process owl:Class GO:2000890 biolink:NamedThing cellodextrin catabolic process The chemical reactions and pathways resulting in the breakdown of a cellodextrin. tmpzr1t_l9r_go_relaxed.owl cellodextrin catabolism jl 2011-07-28T01:05:21Z biological_process owl:Class GO:0043022 biolink:NamedThing ribosome binding Binding to a ribosome. tmpzr1t_l9r_go_relaxed.owl ribosome receptor activity GO:0030376 molecular_function owl:Class GO:0021954 biolink:NamedThing central nervous system neuron development The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048666 biolink:NamedThing neuron development The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090589 biolink:NamedThing protein-phosphocysteine-trehalose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + trehalose (out) = protein cysteine + trehalose-6-phosphate (in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0090118 biolink:NamedThing receptor-mediated endocytosis involved in cholesterol transport A receptor-mediated endocytosis process involved in intracellular cholesterol transport. tmpzr1t_l9r_go_relaxed.owl receptor-mediated endocytosis involved in intracellular cholesterol transport|receptor-mediated endocytosis of LDL|receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport tb 2009-12-07T12:06:05Z biological_process owl:Class GO:2000510 biolink:NamedThing positive regulation of dendritic cell chemotaxis Any process that activates or increases the frequency, rate or extent of dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:21:49Z biological_process owl:Class GO:0035621 biolink:NamedThing ER to Golgi ceramide transport The directed movement of a ceramide from the endoplasmic reticulum (ER) to the Golgi. Ceramides are a class of lipid composed of sphingosine linked to a fatty acid. tmpzr1t_l9r_go_relaxed.owl ER to Golgi ceramide translocation|non-vesicular ceramide trafficking|endoplasmic reticulum to Golgi ceramide transport bf 2010-12-08T12:36:35Z biological_process owl:Class GO:0032365 biolink:NamedThing intracellular lipid transport The directed movement of lipids within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120161 biolink:NamedThing regulation of cold-induced thermogenesis Any process that modulates the frequency, rate or extent of cold-induced thermogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of CIT krc 2018-05-14T17:03:19Z biological_process owl:Class GO:0072041 biolink:NamedThing positive regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis Any process that increases the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron. tmpzr1t_l9r_go_relaxed.owl positive regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis|positive regulation of mesenchymal stem cell apoptotic process involved in nephron morphogenesis mah 2010-01-25T03:10:32Z biological_process owl:Class GO:2001055 biolink:NamedThing positive regulation of mesenchymal cell apoptotic process Any process that activates or increases the frequency, rate or extent of mesenchymal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of mesenchymal cell apoptosis yaf 2011-09-08T02:50:09Z biological_process owl:Class GO:1903873 biolink:NamedThing negative regulation of DNA recombinase mediator complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of DNA recombinase mediator complex assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA recombinase mediator complex assembly|inhibition of DNA recombinase mediator complex formation|downregulation of DNA recombinase mediator complex formation|down regulation of DNA recombinase mediator complex assembly|down-regulation of DNA recombinase mediator complex assembly|down regulation of DNA recombinase mediator complex formation|downregulation of DNA recombinase mediator complex assembly|negative regulation of DNA recombinase mediator complex formation|down-regulation of DNA recombinase mediator complex formation rb 2015-02-05T23:36:54Z biological_process owl:Class GO:0009361 biolink:NamedThing succinate-CoA ligase complex (ADP-forming) A heterodimeric enzyme complex, composed of an alpha and beta chain, most usually found in (but not limited to) bacteria. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA synthetase, ADP-forming cellular_component owl:Class GO:0042709 biolink:NamedThing succinate-CoA ligase complex A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP or GTP. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032714 biolink:NamedThing negative regulation of interleukin-5 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-5 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-5 production|negative regulation of interleukin-5 biosynthetic process|inhibition of interleukin-5 production|down-regulation of interleukin-5 production|negative regulation of IL-5 production|negative regulation of interleukin-5 secretion|downregulation of interleukin-5 production GO:2000663|GO:0045406 biological_process owl:Class GO:0032674 biolink:NamedThing regulation of interleukin-5 production Any process that modulates the frequency, rate, or extent of interleukin-5 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-5 production|regulation of interleukin-5 biosynthetic process|regulation of interleukin-5 secretion GO:0045405|GO:2000662 biological_process owl:Class GO:0032843 biolink:NamedThing hydroperoxide reductase activity Catalysis of the reaction: 2 RSH + ROOH = RSSR + ROH + H2O. This reaction is the thiol-dependent conversion of an organic hydroperoxide to the corresponding alcohol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019144 biolink:NamedThing ADP-sugar diphosphatase activity Catalysis of the reaction: ADP-sugar + H2O = AMP + sugar 1-phosphate. tmpzr1t_l9r_go_relaxed.owl nucleoside diphosphate-sugar hydrolase activity|ADP-sugar sugarphosphohydrolase activity|adenosine diphosphosugar pyrophosphatase activity|ADP-sugar pyrophosphatase activity|ADPsugar pyrophosphatase activity MetaCyc:ADPSUGPPHOSPHAT-RXN|EC:3.6.1.21 molecular_function owl:Class GO:0047064 biolink:NamedThing sulochrin oxidase [(+)-bisdechlorogeodin-forming] activity Catalysis of the reaction: O(2) + 2 sulochrin = 2 (2S)-bisdechlorogeodin + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl sulochrin:oxygen oxidoreductase (cyclizing, (+)-specific)|sulochrin oxidase activity EC:1.21.3.4|MetaCyc:1.10.3.7-RXN|KEGG_REACTION:R00060|RHEA:24092 molecular_function owl:Class GO:0051367 biolink:NamedThing peptidyl-serine decanoylation The decanoylation of peptidyl-serine to form peptidyl-O3-decanoyl-L-serine, typical of the protein ghrelin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0385 biological_process owl:Class GO:0051366 biolink:NamedThing protein decanoylation The modification of a protein amino acid by formation of an ester or amide with decanoic acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid decanoylation biological_process owl:Class GO:0033411 biolink:NamedThing UAA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UAA codon. tmpzr1t_l9r_go_relaxed.owl TAA codon-amino acid adaptor activity Note that in the standard genetic code, TAA is a stop codon (ochre) and is not normally read by a tRNA. molecular_function owl:Class GO:1902423 biolink:NamedThing regulation of attachment of mitotic spindle microtubules to kinetochore Any process that modulates the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation. tmpzr1t_l9r_go_relaxed.owl regulation of attachment of spindle microtubules to kinetochore during mitosis|regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|regulation of mitotic attachment of spindle microtubules to kinetochore|regulation of mitotic bipolar attachment|regulation of attachment of spindle microtubules to mitotic chromosome|regulation of attachment of spindle microtubules to kinetochore involved in mitosis vw 2013-09-19T10:33:38Z biological_process owl:Class GO:0033047 biolink:NamedThing regulation of mitotic sister chromatid segregation Any process that modulates the frequency, rate or extent of sister chromatid segregation during mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030166 biolink:NamedThing proteoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl proteoglycan formation|proteoglycan anabolism|proteoglycan synthesis|proteoglycan biosynthesis biological_process owl:Class GO:0032897 biolink:NamedThing negative regulation of viral transcription Any process that stops, prevents, or reduces the frequency, rate or extent of viral transcription. tmpzr1t_l9r_go_relaxed.owl down-regulation of viral transcription|inhibition of viral transcription|downregulation of viral transcription|down regulation of viral transcription biological_process owl:Class GO:0046168 biolink:NamedThing glycerol-3-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate catabolism|glycerol-3-phosphate degradation|glycerol-3-phosphate breakdown biological_process owl:Class GO:0140543 biolink:NamedThing positive regulation of piRNA transcription Any process that increases the frequency, rate or extent of the synthesis of piRNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19530 pg 2020-11-09T19:26:02Z biological_process owl:Class GO:0140542 biolink:NamedThing regulation of piRNA transcription Any process that modulates the frequency, rate or extent of the synthesis of a piRNA. tmpzr1t_l9r_go_relaxed.owl pg 2020-11-09T19:08:15Z biological_process owl:Class GO:0080062 biolink:NamedThing cytokinin 9-beta-glucosyltransferase activity Catalysis of the reaction: 6-alkylaminopurine + UDP-D-glucose = 6-alkylamino-9-beta-D-glucosylpurine + H+ + UDP. This reaction is an N-glucosylation event. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R08369 dhl 2009-04-13T03:34:38Z molecular_function owl:Class GO:0140717 biolink:NamedThing entry into host through the stromata Entry of a symbiont into host plant tissue via the stromata, microscopic pores in the epidermis of the aerial parts of terrestrial plants. These pores are essential for photosynthesis, as they allow CO(2) to diffuse into the plant. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22206 pg 2021-09-27T16:30:08Z biological_process owl:Class GO:0044409 biolink:NamedThing entry into host Entry of a symbiont into the body, tissues, or cells of a host organism as part of the symbiont life cycle. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl entry into other organism during symbiotic interaction|entry into host cell|penetration into host via a specialized structure|penetration into host via a specialized structure during symbiotic interaction|entry into cell of other organism involved in symbiotic interaction|host cell invasion|entry into cell of other organism during symbiotic interaction|entry into host via a specialized structure during symbiotic interaction|invasion into other organism|entry into host via enzymatic degradation of host cuticle|penetration into host|invasion of host|host penetration|invasion of other organism|invasion into host|entry into host cell via penetration peg|invasive growth|entry into other organism involved in symbiotic interaction|host invasion|entry into host via enzymatic degradation of host anatomical structure|other organism cell invasion|other organism invasion|entry into host through host barriers https://github.com/geneontology/go-ontology/issues/18563 GO:0044411|GO:0051830|GO:0051828|GO:0085027|GO:0085028|GO:0075052|GO:0051806|GO:0030260 biological_process owl:Class GO:0032086 biolink:NamedThing regulation of type III site-specific deoxyribonuclease activity Any process that modulates the frequency, rate or extent of a type III restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl type III restriction endodeoxyribonuclease regulator|regulation of type III restriction endoribonuclease activity|type III restriction enzyme regulator biological_process owl:Class GO:1903663 biolink:NamedThing L-altrarate catabolic process The chemical reactions and pathways resulting in the breakdown of L-altrarate. tmpzr1t_l9r_go_relaxed.owl L-altrarate(1-) catabolism|L-altrarate(1-) breakdown|L-altrarate(1-) degradation jl 2014-11-26T14:34:28Z biological_process owl:Class GO:2000979 biolink:NamedThing positive regulation of forebrain neuron differentiation Any process that activates or increases the frequency, rate or extent of forebrain neuron differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-03T12:09:19Z biological_process owl:Class GO:2000977 biolink:NamedThing regulation of forebrain neuron differentiation Any process that modulates the frequency, rate or extent of forebrain neuron differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-03T12:09:12Z biological_process owl:Class GO:0097119 biolink:NamedThing postsynaptic density protein 95 clustering The clustering process in which postsynaptic density protein 95 (PSD-95) molecules are localized to distinct domains in the cell membrane. PSD-95 is mostly located in the post synaptic density of neurons, and is involved in anchoring synaptic proteins. tmpzr1t_l9r_go_relaxed.owl Dlg4 clustering|PSD-95 clustering|post-synaptic density protein 95 clustering pr 2011-07-31T05:49:44Z biological_process owl:Class GO:0072657 biolink:NamedThing protein localization to membrane A process in which a protein is transported to, or maintained in, a specific location in a membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation in membrane|protein localization in membrane mah 2011-02-14T02:35:18Z biological_process owl:Class GO:0106248 biolink:NamedThing positive regulation of poly(A)-specific ribonuclease activity Any process that activates or increases the frequency, rate or extent of poly(A)-specific ribonuclease activity. tmpzr1t_l9r_go_relaxed.owl hjd 2020-02-03T19:04:00Z biological_process owl:Class GO:0106246 biolink:NamedThing regulation of poly(A)-specific ribonuclease activity Any process that modulates the rate, frequency or extent of the catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. tmpzr1t_l9r_go_relaxed.owl hjd 2020-02-03T18:56:03Z biological_process owl:Class GO:0021859 biolink:NamedThing pyramidal neuron differentiation The process in which a neuroblast or one of its progeny commits to a pyramidal neuron fate, migrates from the ventricular zone to the appropriate layer in the cortex and develops into a mature neuron. tmpzr1t_l9r_go_relaxed.owl projection neuron differentiation biological_process owl:Class GO:0030182 biolink:NamedThing neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102478 biolink:NamedThing beta-L-arabinofuranosidase activity Catalysis of the reaction: beta-L-arabinofuranosyl-(1->2)-beta-L-arabinofuranose + H2O = 2 beta-L-arabinofuranose. tmpzr1t_l9r_go_relaxed.owl RHEA:36051|EC:3.2.1.185|MetaCyc:RXN-14089 molecular_function owl:Class GO:1903468 biolink:NamedThing positive regulation of DNA replication initiation Any process that activates or increases the frequency, rate or extent of DNA replication initiation involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA replication initiation involved in mitotic cell cycle DNA replication|up regulation of DNA replication initiation involved in mitotic DNA replication|up regulation of DNA replication initiation involved in mitotic cell cycle DNA replication|upregulation of DNA replication initiation involved in mitotic cell cycle DNA replication|upregulation of DNA replication initiation involved in mitotic DNA replication|activation of DNA replication initiation involved in mitotic DNA replication|activation of DNA replication initiation involved in mitotic cell cycle DNA replication|up-regulation of DNA replication initiation involved in mitotic DNA replication|positive regulation of DNA replication initiation involved in mitotic cell cycle DNA replication vw 2014-09-23T13:39:06Z biological_process owl:Class GO:0032036 biolink:NamedThing myosin heavy chain binding Binding to a heavy chain of a myosin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905342 biolink:NamedThing positive regulation of protein localization to kinetochore Any process that activates or increases the frequency, rate or extent of protein localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl positive regulation of condensin localization to kinetochore|activation of protein localization to kinetochore|up regulation of protein localization to kinetochore|upregulation of protein localization to kinetochore|up regulation of condensin localization to kinetochore|upregulation of condensin localization to kinetochore|up-regulation of protein localisation to kinetochore|positive regulation of protein localisation to kinetochore|activation of condensin localization to kinetochore|up regulation of protein localisation to kinetochore|up-regulation of protein localization to kinetochore|upregulation of protein localisation to kinetochore|activation of protein localisation to kinetochore|up-regulation of condensin localization to kinetochore Q9H211 in Human in PMID:22581055 es 2016-07-27T15:26:51Z biological_process owl:Class GO:0098898 biolink:NamedThing dense core granule lumen The volume enclosed by the dense core granule membrane. tmpzr1t_l9r_go_relaxed.owl dense core vesicle lumen cellular_component owl:Class GO:0072338 biolink:NamedThing cellular lactam metabolic process The chemical reactions and pathways involving lactams, any cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. tmpzr1t_l9r_go_relaxed.owl cellular lactam metabolism mah 2010-11-04T04:31:21Z biological_process owl:Class GO:0006523 biolink:NamedThing alanine biosynthetic process The chemical reactions and pathways resulting in the formation of alanine, 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl alanine biosynthesis|alanine synthesis|alanine anabolism|alanine formation biological_process owl:Class GO:0031509 biolink:NamedThing subtelomeric heterochromatin assembly The assembly of chromatin into heterochromatin at the subtelomeric region, resulting in a chromatin conformation refractory to transcription. tmpzr1t_l9r_go_relaxed.owl Telomere Position Effect|heterochromatic silencing at telomere|subtelomere chromatin silencing|subtelomeric silencing|chromatin silencing at subtelomere|regulation of subtelomeric heterochromatin assembly|telomeric heterochromatin formation|telomeric heterochromatin assembly|heterochromatic silencing at subtelomere|establishment of chromatin silencing at telomere|regulation of chromatin silencing at telomere|telomeric silencing|chromatin silencing at telomere|telomere chromatin silencing https://github.com/geneontology/go-ontology/issues/19308|https://github.com/geneontology/go-ontology/issues/22027|https://github.com/geneontology/go-ontology/issues/19188 GO:0099114|GO:0006348|GO:0035390 biological_process owl:Class GO:0006311 biolink:NamedThing meiotic gene conversion The cell cycle process in which genetic information is transferred from one helix to another. It often occurs in association with general genetic recombination events, and is believed to be a straightforward consequence of the mechanisms of general recombination and DNA repair. For example, meiosis might yield three copies of the maternal version of an allele and only one copy of the paternal allele, indicating that one of the two copies of the paternal allele has been changed to a copy of the maternal allele. tmpzr1t_l9r_go_relaxed.owl gene conversion without reciprocal crossover biological_process owl:Class GO:0035822 biolink:NamedThing gene conversion A DNA recombination process that results in the unidirectional transfer of genetic material from a donor sequence to a highly homologous acceptor. The resulting acceptor sequence is identical to that of the donor. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18777 bf 2011-05-04T01:04:39Z biological_process owl:Class GO:1901764 biolink:NamedThing phosphinothricin metabolic process The chemical reactions and pathways involving phosphinothricin. tmpzr1t_l9r_go_relaxed.owl phosphinothricin metabolism yaf 2013-01-15T10:02:37Z biological_process owl:Class GO:0034823 biolink:NamedThing citronellyl-CoA ligase activity Catalysis of the reaction: citronellate + CoASH + ATP = citronellyl-CoA + AMP + PPi. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1157|KEGG_REACTION:R08088 molecular_function owl:Class GO:0042744 biolink:NamedThing hydrogen peroxide catabolic process The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide degradation|hydrogen peroxide breakdown|H2O2 catabolic process|H2O2 scavenging|detoxification of hydrogen peroxide|hydrogen peroxide catabolism|hydrogen peroxide scavenging|hydrogen peroxide removal|detoxification of H2O2 biological_process owl:Class GO:0060964 biolink:NamedThing regulation of gene silencing by miRNA Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: RNA (often mRNA) cleavage or mRNA translational repression. tmpzr1t_l9r_go_relaxed.owl regulation of gene silencing by microRNA dph 2009-10-05T03:10:28Z biological_process owl:Class GO:1905497 biolink:NamedThing negative regulation of triplex DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of triplex DNA binding. tmpzr1t_l9r_go_relaxed.owl downregulation of triplex DNA binding|down regulation of triplex DNA binding|down-regulation of triplex DNA binding|inhibition of triplex DNA binding ans 2016-09-26T14:57:17Z biological_process owl:Class GO:2000652 biolink:NamedThing regulation of secondary cell wall biogenesis Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of secondary cell wall synthesis|regulation of plant-type secondary cell wall biogenesis|regulation of secondary cell wall anabolism|regulation of secondary cell wall biosynthetic process|regulation of cellulose and pectin-containing secondary cell wall biogenesis|regulation of secondary cell wall formation dhl 2011-04-29T08:50:02Z biological_process owl:Class GO:0019351 biolink:NamedThing dethiobiotin biosynthetic process The chemical reactions and pathways resulting in the formation of dethiobiotin, a derivative of biotin in which the sulfur atom has been replaced by two hydrogen atoms. tmpzr1t_l9r_go_relaxed.owl desthiobiotin biosynthetic process|dethiobiotin biosynthesis|dethiobiotin anabolism|dethiobiotin synthesis|desthiobiotin biosynthesis|dethiobiotin formation biological_process owl:Class GO:0060882 biolink:NamedThing basement membrane disassembly involved in semicircular canal fusion A process that results in the breakdown of the basement membrane that contributes to the process of semicircular canal fusion. tmpzr1t_l9r_go_relaxed.owl basal lamina disassembly involved in semicircular canal fusion dph 2009-08-13T11:29:52Z biological_process owl:Class GO:0034769 biolink:NamedThing basement membrane disassembly The controlled breakdown of the basement membrane in the context of a normal process such as imaginal disc eversion. tmpzr1t_l9r_go_relaxed.owl basal lamina disassembly Note that this term has no relationship to 'membrane disassembly ; GO:0030397' because the basement membrane is not a lipid bilayer. dph 2009-08-13T11:27:24Z GO:0060881 biological_process owl:Class GO:0045110 biolink:NamedThing intermediate filament bundle assembly The formation of the bundles of intermediate filaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs. tmpzr1t_l9r_go_relaxed.owl tonofilament assembly biological_process owl:Class GO:0009084 biolink:NamedThing glutamine family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. tmpzr1t_l9r_go_relaxed.owl glutamine family amino acid biosynthesis|glutamine family amino acid formation|glutamine family amino acid anabolism|glutamine family amino acid synthesis biological_process owl:Class GO:1901607 biolink:NamedThing alpha-amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of an alpha-amino acid. tmpzr1t_l9r_go_relaxed.owl alpha-amino acid biosynthesis|alpha-amino acid synthesis|alpha-amino acid formation|alpha-amino acid anabolism tb 2012-11-08T17:39:58Z biological_process owl:Class GO:1904174 biolink:NamedThing negative regulation of histone demethylase activity (H3-K4 specific) Any process that stops, prevents or reduces the frequency, rate or extent of histone demethylase activity (H3-K4 specific). tmpzr1t_l9r_go_relaxed.owl down regulation of histone demethylase activity (H3-K4 specific)|downregulation of histone demethylase activity (H3-K4 specific)|down-regulation of histone demethylase activity (H3-K4 specific)|inhibition of histone demethylase activity (H3-K4 specific) dph 2015-04-24T19:29:38Z biological_process owl:Class GO:0031057 biolink:NamedThing negative regulation of histone modification Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of a histone. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone modification|downregulation of histone modification|inhibition of histone modification|down regulation of histone modification biological_process owl:Class GO:0018770 biolink:NamedThing 6-oxo-2-hydroxy-7-(4'-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate hydrolase activity Catalysis of the reaction: 6-oxo-2-hydroxy-7-(4'-chlorophenyl)-3,8,8-trichloroocta-2Z,4Z,7-trienoate + H2O = 2-(4'-chlorophenyl)-3,3-dichloropropenoate + cis-2-Hydroxy-3-chloropenta-2,4-dienone + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0444 molecular_function owl:Class GO:0015192 biolink:NamedThing L-phenylalanine transmembrane transporter activity Enables the transfer of L-phenylalanine from one side of a membrane to the other. L-phenylalanine is 2-amino-3-phenylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine permease activity|L-phenylalanine transporter activity molecular_function owl:Class GO:0070303 biolink:NamedThing negative regulation of stress-activated protein kinase signaling cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signaling via the stress-activated protein kinase signaling cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of stress-activated protein kinase signaling pathway|negative regulation of stress-activated protein kinase signalling pathway|down regulation of stress-activated protein kinase signaling pathway|downregulation of stress-activated protein kinase signaling pathway|negative regulation of SAPK signaling pathway|down-regulation of stress-activated protein kinase signaling pathway|inhibition of stress-activated protein kinase signaling pathway biological_process owl:Class GO:0050540 biolink:NamedThing 2-aminomuconate deaminase activity Catalysis of the reaction: 2-aminomuconate + H(2)O + H(+) = (Z)-5-oxohex-2-enedioate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 2-aminomuconate aminohydrolase activity KEGG_REACTION:R03887|MetaCyc:3.5.99.5-RXN|RHEA:20996|EC:3.5.99.5 molecular_function owl:Class GO:0010547 biolink:NamedThing thylakoid membrane disassembly The controlled breakdown of the thylakoid membrane in the context of a normal process. tmpzr1t_l9r_go_relaxed.owl thylakoid membrane degradation biological_process owl:Class GO:0010027 biolink:NamedThing thylakoid membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl thylakoid membrane organization and biogenesis|thylakoid membrane organisation See also the cellular component term 'thylakoid membrane ; GO:0042651'. biological_process owl:Class GO:1905701 biolink:NamedThing positive regulation of xenobiotic detoxification by transmembrane export across the plasma membrane Any process that activates or increases the frequency, rate or extent of xenobiotic transmembrane export. A xenobiotic is a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl up-regulation of drug transmembrane export|positive regulation of xenobiotic transmembrane export|activation of drug transmembrane export|positive regulation of drug transmembrane export|up regulation of drug transmembrane export|upregulation of drug transmembrane export https://github.com/geneontology/go-ontology/issues/19460|https://github.com/geneontology/go-ontology/issues/17083 sl 2016-11-15T16:46:44Z biological_process owl:Class GO:0019094 biolink:NamedThing pole plasm mRNA localization Any process in which mRNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of pole plasm mRNA localization|pole plasm mRNA localisation|establishment and maintenance of mRNA localization in pole plasm|pole granule RNA localization|oocyte pole plasm mRNA localization GO:0048120 biological_process owl:Class GO:0047940 biolink:NamedThing glucuronokinase activity Catalysis of the reaction: D-glucuronate + ATP = 1-phospho-alpha-D-glucuronate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:D-glucuronate 1-phosphotransferase activity|glucuronokinase (phosphorylating)|glucurono-glucuronokinase activity MetaCyc:GLUCURONOKINASE-RXN|KEGG_REACTION:R01476|EC:2.7.1.43|RHEA:17005 molecular_function owl:Class GO:0038047 biolink:NamedThing morphine receptor activity Combining with morphine (17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol), and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl mu-opioid receptor activity bf 2011-11-14T01:35:18Z molecular_function owl:Class GO:0004985 biolink:NamedThing G protein-coupled opioid receptor activity Combining with an opioid (any narcotic derived from or resembling opium), and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl opioid receptor activity https://github.com/geneontology/go-ontology/issues/21110 molecular_function owl:Class GO:1900680 biolink:NamedThing positive regulation of ferricrocin biosynthetic process Any process that activates or increases the frequency, rate or extent of ferricrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of ferricrocin biosynthetic process, peptide modification|positive regulation of ferricrocin formation|up regulation of ferricrocin biosynthetic process, peptide modification|upregulation of ferricrocin biosynthetic process, peptide formation|positive regulation of ferricrocin biosynthesis|upregulation of ferricrocin anabolism|up regulation of ferricrocin formation|up-regulation of ferricrocin anabolism|positive regulation of ferricrocin biosynthetic process, peptide formation|activation of ferricrocin biosynthesis|activation of ferricrocin biosynthetic process, peptide modification|up regulation of ferricrocin biosynthetic process|positive regulation of ferricrocin anabolism|activation of ferricrocin anabolism|up-regulation of ferricrocin biosynthetic process, peptide formation|upregulation of ferricrocin formation|activation of ferricrocin formation|up regulation of ferricrocin anabolism|upregulation of ferricrocin synthesis|activation of ferricrocin biosynthetic process, peptide formation|activation of ferricrocin biosynthetic process|up-regulation of ferricrocin biosynthesis|up regulation of ferricrocin synthesis|positive regulation of ferricrocin synthesis|up-regulation of ferricrocin biosynthetic process, peptide modification|up regulation of ferricrocin biosynthesis|positive regulation of ferricrocin biosynthetic process, peptide modification|activation of ferricrocin synthesis|up regulation of ferricrocin biosynthetic process, peptide formation|up-regulation of ferricrocin biosynthetic process|upregulation of ferricrocin biosynthesis|up-regulation of ferricrocin formation|upregulation of ferricrocin biosynthetic process|up-regulation of ferricrocin synthesis di 2012-05-22T04:28:23Z biological_process owl:Class GO:1900678 biolink:NamedThing regulation of ferricrocin biosynthetic process Any process that modulates the frequency, rate or extent of ferricrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ferricrocin formation|regulation of ferricrocin biosynthetic process, peptide modification|regulation of ferricrocin biosynthetic process, peptide formation|regulation of ferricrocin anabolism|regulation of ferricrocin biosynthesis|regulation of ferricrocin synthesis di 2012-05-22T04:27:53Z biological_process owl:Class GO:1902684 biolink:NamedThing negative regulation of receptor localization to synapse Any process that stops, prevents or reduces the frequency, rate or extent of receptor localization to synapse. tmpzr1t_l9r_go_relaxed.owl negative regulation of receptor localisation to synapse|down-regulation of receptor localisation to synapse|down-regulation of receptor localization to synapse|downregulation of receptor localization to synapse|inhibition of receptor localisation to synapse|downregulation of receptor localisation to synapse|inhibition of receptor localization to synapse|down regulation of receptor localisation to synapse|down regulation of receptor localization to synapse kmv 2014-02-07T17:38:41Z biological_process owl:Class GO:0062062 biolink:NamedThing oligosaccharyltransferase complex binding Binding to an oligosaccharyltransferase complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:56:32Z molecular_function owl:Class GO:1905441 biolink:NamedThing response to chondroitin 4'-sulfate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chondroitin 4'-sulfate stimulus. tmpzr1t_l9r_go_relaxed.owl cvs 2016-09-14T18:56:27Z biological_process owl:Class GO:0072429 biolink:NamedThing response to intra-S DNA damage checkpoint signaling A process that occurs in response to signals generated as a result of intra-S DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in intra-S DNA damage checkpoint|intra-S DNA damage checkpoint effector process mah 2010-12-08T04:31:56Z biological_process owl:Class GO:0072423 biolink:NamedThing response to DNA damage checkpoint signaling A process that occurs in response to signals generated as a result of DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in DNA damage checkpoint|DNA damage checkpoint effector process mah 2010-12-08T04:20:25Z biological_process owl:Class GO:2000969 biolink:NamedThing positive regulation of AMPA receptor activity Any process that activates or increases the frequency, rate or extent of AMPA selective glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity pr 2011-08-03T10:27:08Z biological_process owl:Class GO:2001259 biolink:NamedThing positive regulation of cation channel activity Any process that activates or increases the frequency, rate or extent of cation channel activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of cation diffusion facilitator activity|positive regulation of nonselective cation channel activity vk 2011-12-07T07:14:57Z biological_process owl:Class GO:0051090 biolink:NamedThing regulation of DNA-binding transcription factor activity Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. tmpzr1t_l9r_go_relaxed.owl regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription factor activity|regulation of thyroid hormone receptor activity|regulation of androgen receptor activity|regulation of DNA binding transcription factor activity GO:2000823|GO:1904167 biological_process owl:Class GO:0035566 biolink:NamedThing regulation of metanephros size Any process that modulates the size of a metanephric kidney. tmpzr1t_l9r_go_relaxed.owl regulation of metanephric kidney size bf 2010-07-23T11:34:06Z biological_process owl:Class GO:0002243 biolink:NamedThing detection of parasitic plant The series of events in which a stimulus from a parasitic plant is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009602 biolink:NamedThing detection of symbiont The series of events in which a stimulus from a symbiont (an organism living in close physical association with an organism of a different species) is received and converted into a molecular signal. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl recognition of symbiont|perception of symbiont https://github.com/geneontology/go-ontology/issues/17977 GO:0051855 biological_process owl:Class GO:0022002 biolink:NamedThing negative regulation of anterior neural cell fate commitment of the neural plate by Wnt signaling pathway The series of molecular signals that stops, prevents or reduces the frequency or rate at which a cell adopts an anterior neural cell fate, initiated by binding of Wnt protein to a receptor on the surface of the target cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of anterior neural cell fate commitment of the neural plate by Wnt-activated signaling pathway|Wnt receptor signaling involved in down regulation of anterior neural cell fate of the neural plate|Wnt receptor signaling involved in inhibition of anterior neural cell fate of the neural plate|Wnt receptor signaling involved in down-regulation of anterior neural cell fate of the neural plate|Wnt receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate|Wnt receptor signalling involved in negative regulation of anterior neural cell fate of the neural plate|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|Wnt receptor signaling involved in downregulation of anterior neural cell fate of the neural plate biological_process owl:Class GO:1900981 biolink:NamedThing negative regulation of phenazine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of phenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of dibenzopyrazine biosynthesis|down-regulation of dibenzopyrazine biosynthetic process|down regulation of azophenylene biosynthetic process|negative regulation of dibenzo-p-diazine biosynthesis|down-regulation of azophenylene biosynthetic process|downregulation of acridizine biosynthesis|downregulation of dibenzopyrazine biosynthesis|downregulation of phenazine biosynthetic process|down regulation of azophenylene biosynthesis|downregulation of dibenzo-p-diazine biosynthetic process|inhibition of phenazine biosynthetic process|negative regulation of dibenzopyrazine biosynthetic process|downregulation of acridizine biosynthetic process|inhibition of dibenzopyrazine biosynthetic process|downregulation of azophenylene biosynthesis|inhibition of dibenzo-p-diazine biosynthesis|down regulation of acridizine biosynthetic process|down regulation of phenazine biosynthetic process|down-regulation of dibenzo-p-diazine biosynthetic process|down regulation of dibenzopyrazine biosynthetic process|down regulation of acridizine biosynthesis|down regulation of dibenzo-p-diazine biosynthesis|negative regulation of azophenylene biosynthetic process|downregulation of azophenylene biosynthetic process|down-regulation of phenazine biosynthetic process|down-regulation of dibenzo-p-diazine biosynthesis|negative regulation of acridizine biosynthetic process|inhibition of acridizine biosynthesis|downregulation of dibenzo-p-diazine biosynthesis|downregulation of dibenzopyrazine biosynthetic process|down-regulation of acridizine biosynthesis|down-regulation of acridizine biosynthetic process|down regulation of dibenzo-p-diazine biosynthetic process|inhibition of azophenylene biosynthetic process|down-regulation of dibenzopyrazine biosynthesis|negative regulation of dibenzo-p-diazine biosynthetic process|negative regulation of dibenzopyrazine biosynthesis|negative regulation of acridizine biosynthesis|negative regulation of azophenylene biosynthesis|inhibition of dibenzo-p-diazine biosynthetic process|down regulation of dibenzopyrazine biosynthesis|inhibition of acridizine biosynthetic process|inhibition of azophenylene biosynthesis|down-regulation of azophenylene biosynthesis tt 2012-06-14T04:05:03Z biological_process owl:Class GO:1901904 biolink:NamedThing tyrocidine biosynthetic process The chemical reactions and pathways resulting in the formation of tyrocidine. tmpzr1t_l9r_go_relaxed.owl tyrocidine biosynthesis|tyrocidine synthesis|tyrocidine formation|tyrocidine anabolism yaf 2013-02-12T23:40:43Z biological_process owl:Class GO:1901902 biolink:NamedThing tyrocidine metabolic process The chemical reactions and pathways involving tyrocidine. tmpzr1t_l9r_go_relaxed.owl tyrocidine metabolism yaf 2013-02-12T23:40:29Z biological_process owl:Class GO:2001165 biolink:NamedThing positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues Any process that activates or increases the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:31:07Z biological_process owl:Class GO:2001163 biolink:NamedThing regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues Any process that modulates the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:30:59Z biological_process owl:Class GO:0008156 biolink:NamedThing negative regulation of DNA replication Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA replication|down regulation of DNA replication|down-regulation of DNA replication|inhibition of DNA replication|DNA replication inhibitor biological_process owl:Class GO:0014730 biolink:NamedThing skeletal muscle regeneration at neuromuscular junction The regrowth of muscle tissue to repair injured or damaged muscle fibers in the postnatal stage at the neuromuscular junction. Regeneration of neuromuscular junctions occurs in an orderly way and relies on communication between nerve and muscle. Skeletal myofibers regenerate after injury and form neuro-muscular junctions with motor axons similar to normal ones. Regenerating myofibers develop within the basal lamina sheaths (satellite cells) of original myofibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043403 biolink:NamedThing skeletal muscle tissue regeneration The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage. tmpzr1t_l9r_go_relaxed.owl myofiber turnover biological_process owl:Class GO:0046633 biolink:NamedThing alpha-beta T cell proliferation The expansion of an alpha-beta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl alpha-beta T lymphocyte proliferation|alpha-beta T-lymphocyte proliferation|alpha-beta T-cell proliferation biological_process owl:Class GO:1902341 biolink:NamedThing xylitol transport The directed movement of a xylitol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Xylitol is a polyalcohol (pentane-1,2,3,4,5-pentol), produced by hydrogenation of xylose. tmpzr1t_l9r_go_relaxed.owl se 2013-07-30T16:04:38Z biological_process owl:Class GO:2001246 biolink:NamedThing negative regulation of phosphatidylcholine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of phosphatidylcholine anabolism|negative regulation of phosphatidylcholine synthesis|negative regulation of phosphatidylcholine formation|negative regulation of phosphatidylcholine biosynthesis tb 2011-11-28T09:47:47Z biological_process owl:Class GO:2001245 biolink:NamedThing regulation of phosphatidylcholine biosynthetic process Any process that modulates the frequency, rate or extent of phosphatidylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidylcholine formation|regulation of phosphatidylcholine synthesis|regulation of phosphatidylcholine biosynthesis|regulation of phosphatidylcholine anabolism tb 2011-11-28T09:47:32Z biological_process owl:Class GO:0046190 biolink:NamedThing aerobic phenol-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic phenol-containing compound anabolism|aerobic phenol-containing compound biosynthesis|aerobic phenol-containing compound synthesis|aerobic phenol-containing compound formation biological_process owl:Class GO:1904628 biolink:NamedThing cellular response to phorbol 13-acetate 12-myristate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to TPA|cellular response to response to PMA|cellular response to phorbol 12-tetradecanoate 13-acetate|cellular response to tetradecanoylphorbol acetate sl 2015-08-28T13:44:10Z biological_process owl:Class GO:1904627 biolink:NamedThing response to phorbol 13-acetate 12-myristate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus. tmpzr1t_l9r_go_relaxed.owl response to tetradecanoylphorbol acetate|response to TPA|response to phorbol 12-tetradecanoate 13-acetate|response to PMA sl 2015-08-28T13:44:03Z biological_process owl:Class GO:0045778 biolink:NamedThing positive regulation of ossification Any process that activates or increases the frequency, rate or extent of ossification, the formation of bone or of a bony substance or the conversion of fibrous tissue or of cartilage into bone or a bony substance. tmpzr1t_l9r_go_relaxed.owl up-regulation of ossification|activation of ossification|upregulation of ossification|positive regulation of bone biosynthesis|up regulation of ossification|stimulation of ossification|positive regulation of bone formation biological_process owl:Class GO:0030278 biolink:NamedThing regulation of ossification Any process that modulates the frequency, rate or extent of ossification, the formation of bone or of a bony substance or the conversion of fibrous tissue or of cartilage into bone or a bony substance. tmpzr1t_l9r_go_relaxed.owl regulation of bone biosynthesis|regulation of bone formation biological_process owl:Class GO:0060769 biolink:NamedThing positive regulation of epithelial cell proliferation involved in prostate gland development Any process that increases the rate, frequency or extent of epithelial cell proliferation that contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-08T07:38:02Z biological_process owl:Class GO:0050679 biolink:NamedThing positive regulation of epithelial cell proliferation Any process that activates or increases the rate or extent of epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of epithelial cell proliferation|upregulation of epithelial cell proliferation|stimulation of epithelial cell proliferation|activation of epithelial cell proliferation|up regulation of epithelial cell proliferation biological_process owl:Class GO:1903668 biolink:NamedThing negative regulation of chemorepellent activity Any process that stops, prevents or reduces the frequency, rate or extent of chemorepellent activity. tmpzr1t_l9r_go_relaxed.owl downregulation of chemorepellent activity|down-regulation of chemorepellent activity|down regulation of chemorepellent activity|down regulation of chemorepellant activity|negative regulation of chemorepellant activity|inhibition of chemorepellent activity|inhibition of chemorepellant activity|downregulation of chemorepellant activity|down-regulation of chemorepellant activity pf 2014-11-26T23:58:42Z biological_process owl:Class GO:1900121 biolink:NamedThing negative regulation of receptor binding Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. tmpzr1t_l9r_go_relaxed.owl inhibition of receptor ligand|down regulation of receptor binding|inhibition of receptor binding|downregulation of receptor binding|down regulation of receptor-associated protein activity|down-regulation of receptor binding bf 2012-02-22T11:40:57Z biological_process owl:Class GO:0008282 biolink:NamedThing inward rectifying potassium channel A protein complex that comprises four pore-forming (Kir6.x) and four regulatory sulphonylurea receptor (SURx) subunits and forms a transmembrane channel through which ions may pass. The opening and closing of the channel is regulated by ATP: binding of ATP to the Kir6.x subunit inhibits channel activity, whereas binding of Mg2+-complexed ATP or ADP to the SURx subunit stimulates channel activity. tmpzr1t_l9r_go_relaxed.owl Kir6.x complex|KCNJ8-SUR complex|ATP-sensitive potassium channel complex|Kir6.2-SURx complex|KCNJ8-SURx complex|Kir6-SUR complex|inward rectifying K+ channel|KCNJ11-SURx complex|Kir6.2-SUR complex|Kir6.1-SUR complex|Kir6.1-SURx complex|KCNJ11-SUR complex|Kir6.x-SURx complex cellular_component owl:Class GO:0034705 biolink:NamedThing potassium channel complex An ion channel complex through which potassium ions pass. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046662 biolink:NamedThing regulation of oviposition Any process that modulates the frequency, rate or extent of the deposition of eggs, either fertilized or not, upon a surface or into a medium. tmpzr1t_l9r_go_relaxed.owl regulation of post-mating oviposition GO:0048042 biological_process owl:Class GO:1903286 biolink:NamedThing regulation of potassium ion import Any process that modulates the frequency, rate or extent of potassium ion import. tmpzr1t_l9r_go_relaxed.owl regulation of potassium ion uptake|regulation of potassium import rl 2014-08-11T14:26:16Z biological_process owl:Class GO:0002870 biolink:NamedThing T cell anergy Any process contributing to anergy in T cells, a state of functional inactivation which is part of T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl T lymphocyte anergy|T-cell anergy|T-lymphocyte anergy biological_process owl:Class GO:0060124 biolink:NamedThing positive regulation of growth hormone secretion Any process that increases the frequency, rate or extent of the regulated release of growth hormone from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990392 biolink:NamedThing EFF-1 complex A trimeric cell-cell fusion complex that serves as a scaffold for zippering up the extracellular domains, bringing the transmembrane segments into close proximity such that they can continue zippering within the two membranes into one. Two prefusion monomers cluster at the surface of adjacent cells. Parallel EFF-1 interactions occur across cells and a third monomer, which can come from either cell, adds on to make an intermediate, extended trimer. tmpzr1t_l9r_go_relaxed.owl An example of this is eff-1 in C. elegans (G5ECA1) in PMID:24725407 (inferred from direct assay). bhm 2014-06-04T14:45:02Z cellular_component owl:Class GO:0006106 biolink:NamedThing fumarate metabolic process The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. tmpzr1t_l9r_go_relaxed.owl fumarate metabolism biological_process owl:Class GO:1905043 biolink:NamedThing positive regulation of epithelium regeneration Any process that activates or increases the frequency, rate or extent of epithelium regeneration. tmpzr1t_l9r_go_relaxed.owl up-regulation of regeneration of epithelium|upregulation of epithelium regeneration|positive regulation of regeneration of epithelium|upregulation of regeneration of epithelium|up-regulation of epithelium regeneration|up regulation of epithelium regeneration|activation of regeneration of epithelium|up regulation of regeneration of epithelium|activation of epithelium regeneration rph 2016-03-11T10:59:12Z biological_process owl:Class GO:0075241 biolink:NamedThing positive regulation of zoospore formation Any process that activates, maintains or increases the frequency, rate or extent of zoospore formation, a process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075240 biolink:NamedThing regulation of zoospore formation Any process that modulates the frequency, rate or extent of zoospore formation, a process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043705 biolink:NamedThing cyanophycin metabolic process The chemical reactions and pathways involving cyanophycin, a non-protein, non-ribosomally produced amino acid polymer composed of an aspartic acid backbone and arginine side groups. tmpzr1t_l9r_go_relaxed.owl multi-L-arginyl-poly(L-aspartic acid) metabolism|cyanophycin metabolism biological_process owl:Class GO:0008670 biolink:NamedThing 2,4-dienoyl-CoA reductase (NADPH) activity Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 4-enoyl coenzyme A (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|trans-2,3-didehydroacyl-CoA:NADP+ 4-oxidoreductase activity|4-enoyl-CoA reductase activity|4-enoyl-CoA reductase (NADPH) activity|4-enoyl-CoA reductase (NADPH2) RHEA:12136|MetaCyc:DIENOYLCOAREDUCT-RXN|EC:1.3.1.34 molecular_function owl:Class GO:1900707 biolink:NamedThing regulation of tensidol A biosynthetic process Any process that modulates the frequency, rate or extent of tensidol A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of tensidol A formation|regulation of tensidol A anabolism|regulation of tensidol A synthesis|regulation of tensidol A biosynthesis di 2012-05-22T05:01:44Z biological_process owl:Class GO:1901393 biolink:NamedThing negative regulation of transforming growth factor beta1 activation Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta1 activation. tmpzr1t_l9r_go_relaxed.owl downregulation of TGFbeta 1 activation|down-regulation of transforming growth factor beta1 activation|down-regulation of transforming growth factor-beta1 activation|downregulation of L-TGF-beta 1 activation|negative regulation of transforming growth factor-beta1 activation|downregulation of TGF-beta 1 activation|downregulation of TGFB1 activation|inhibition of TGFB1 activation|down regulation of TGFB1 activation|down regulation of latent-TGF-beta1 activation|down-regulation of latent-TGF-beta1 activation|negative regulation of TGFB1 activation|down regulation of L-TGF-beta 1 activation|negative regulation of L-TGF-beta 1 activation|downregulation of transforming growth factor-beta1 activation|downregulation of transforming growth factor beta1 activation|down regulation of transforming growth factor beta1 activation|inhibition of TGFbeta 1 activation|down-regulation of L-TGF-beta 1 activation|negative regulation of TGFbeta 1 activation|down-regulation of TGF-beta 1 activation|down-regulation of TGFbeta 1 activation|inhibition of TGF-beta 1 activation|inhibition of transforming growth factor beta1 activation|down regulation of TGFbeta 1 activation|down-regulation of TGFB1 activation|inhibition of transforming growth factor-beta1 activation|negative regulation of TGF-beta 1 activation|inhibition of L-TGF-beta 1 activation|downregulation of latent-TGF-beta1 activation|negative regulation of latent-TGF-beta1 activation|inhibition of latent-TGF-beta1 activation|down regulation of TGF-beta 1 activation|down regulation of transforming growth factor-beta1 activation bf 2012-10-01T10:41:17Z biological_process owl:Class GO:1903880 biolink:NamedThing 17alpha-hydroxyprogesterone binding Binding to 17alpha-hydroxyprogesterone. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:03:22Z molecular_function owl:Class GO:2001026 biolink:NamedThing regulation of endothelial cell chemotaxis Any process that modulates the frequency, rate or extent of endothelial cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl rl 2011-08-22T01:07:26Z biological_process owl:Class GO:0015812 biolink:NamedThing gamma-aminobutyric acid transport The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 4-aminobutyrate transport|GABA transport|4-aminobutanoate transport See also the biological process term 'neurotransmitter transport ; GO:0006836'. biological_process owl:Class GO:0071953 biolink:NamedThing elastic fiber An supramolecular fiber that consists of an insoluble core of polymerized tropoelastin monomers and a surrounding mantle of microfibrils. Elastic fibers provide elasticity and recoiling to tissues and organs, and maintain structural integrity against mechanical strain. tmpzr1t_l9r_go_relaxed.owl elastic fibre|elastin fiber mah 2010-10-11T11:44:57Z cellular_component owl:Class GO:0099512 biolink:NamedThing supramolecular fiber A polymer consisting of an indefinite number of protein or protein complex subunits that have polymerised to form a fiber-shaped structure. tmpzr1t_l9r_go_relaxed.owl fibril GO:0043205 cellular_component owl:Class GO:1904816 biolink:NamedThing positive regulation of protein localization to chromosome, telomeric region Any process that activates or increases the frequency, rate or extent of protein localization to chromosome, telomeric region. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localisation to chromosome, telomeric region|upregulation of protein localisation to chromosome, telomeric region|up-regulation of protein localization to chromosome, telomeric region|up regulation of protein localisation to chromosome, telomeric region|activation of protein localisation to chromosome, telomeric region|activation of protein localization to chromosome, telomeric region|up regulation of protein localization to chromosome, telomeric region|upregulation of protein localization to telomere|positive regulation of protein localization to telomere|up-regulation of protein localisation to chromosome, telomeric region|upregulation of protein localization to chromosome, telomeric region|up regulation of protein localization to telomere|activation of protein localization to telomere|up-regulation of protein localization to telomere nc 2015-11-16T12:18:58Z biological_process owl:Class GO:0016667 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulfur group of donors, other acceptors|oxidoreductase activity, acting on sulphur group of donors EC:1.8.-.-|Reactome:R-HSA-2213240 molecular_function owl:Class GO:0046444 biolink:NamedThing FMN metabolic process The chemical reactions and pathways involving FMN, riboflavin 5'-(dihydrogen phosphate), a coenzyme for a number of oxidative enzymes including NADH dehydrogenase. tmpzr1t_l9r_go_relaxed.owl FMN metabolism biological_process owl:Class GO:0042726 biolink:NamedThing flavin-containing compound metabolic process The chemical reactions and pathways involving a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. tmpzr1t_l9r_go_relaxed.owl riboflavin and derivative metabolism|flavin-containing compound metabolism|vitamin B2 and derivative metabolism|vitamin B2 and derivative metabolic process|riboflavin and derivative metabolic process biological_process owl:Class GO:0002749 biolink:NamedThing antigen processing and presentation initiated by toll-like receptor mediated phagocytosis of antigen Antigen processing and presentation which is initiated by phagocytosis of antigen bound directly or indirectly to a cell surface toll-like receptor (TLR). tmpzr1t_l9r_go_relaxed.owl antigen processing and presentation initiated by TLR mediated phagocytosis of antigen biological_process owl:Class GO:0002747 biolink:NamedThing antigen processing and presentation following phagocytosis Antigen processing and presentation which is initiated by uptake of antigen via phagocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002932 biolink:NamedThing tendon sheath development The process whose specific outcome is the progression of a tendon sheath over time, from its formation to the mature structure. A tendon sheath is a layer of membrane around a tendon. It permits the tendon to move. tmpzr1t_l9r_go_relaxed.owl hjd 2012-04-23T02:11:22Z biological_process owl:Class GO:0005880 biolink:NamedThing nuclear microtubule Any microtubule in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005874 biolink:NamedThing microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. tmpzr1t_l9r_go_relaxed.owl microtubuli|neurotubule|microtubulus NIF_Subcellular:sao1846835077|Wikipedia:Microtubule cellular_component owl:Class GO:0075255 biolink:NamedThing teliospore formation The set of processes leading to the formation of a thick-walled resting or over-wintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006887 biolink:NamedThing exocytosis A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. tmpzr1t_l9r_go_relaxed.owl vesicle exocytosis|nonselective vesicle exocytosis Wikipedia:Exocytosis GO:0016194|GO:0016195 biological_process owl:Class GO:0032940 biolink:NamedThing secretion by cell The controlled release of a substance by a cell. tmpzr1t_l9r_go_relaxed.owl cellular secretion Wikipedia:Secretion biological_process owl:Class GO:0039594 biolink:NamedThing endoribonuclease activity involved in viral induction of host mRNA catabolic process Any endoribonuclease activity that contributes to the viral-induced catabolism of host mRNA. tmpzr1t_l9r_go_relaxed.owl GO:0039594 can be used to annotate a host or viral endoribonuclease activity that cleaves host mRNA in response to a viral infection. bf 2012-07-05T11:21:26Z molecular_function owl:Class GO:1990109 biolink:NamedThing rejection of pollen from other species The process involved in the rejection of pollen of one species by cells in the stigma of another species. tmpzr1t_l9r_go_relaxed.owl unilateral interspecific incompatibility tb 2013-05-29T21:12:09Z biological_process owl:Class GO:2000541 biolink:NamedThing positive regulation of protein geranylgeranylation Any process that activates or increases the frequency, rate or extent of protein geranylgeranylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein amino acid geranylgeranylation|positive regulation of C-terminal protein geranylgeranylation tb 2011-03-29T06:23:15Z biological_process owl:Class GO:0000755 biolink:NamedThing cytogamy During conjugation with cellular fusion, the process resulting in creating a single cell from complementary mating types. The localized remodeling and dissolution of external protective structures allow the fusion of the plasma membranes and cytoplasmic mixing. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl zygote formation GO:0030462|GO:0000218 biological_process owl:Class GO:0022413 biolink:NamedThing reproductive process in single-celled organism A process, occurring at the cellular level, that is involved in the reproductive function of a single-celled organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036035 biolink:NamedThing osteoclast development The process whose specific outcome is the progression of a osteoclast from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue. tmpzr1t_l9r_go_relaxed.owl osteoclast cell development bf 2011-11-02T05:20:35Z biological_process owl:Class GO:0098751 biolink:NamedThing bone cell development The process whose specific outcome is the progression of a bone cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl Not to be used for manual annotation. Please choose a more specific cell development term or if not possible, bone or bone tissue development. biological_process owl:Class GO:0042827 biolink:NamedThing platelet dense granule Electron-dense granule occurring in blood platelets that stores and secretes adenosine nucleotides and serotonin. They contain a highly condensed core consisting of serotonin, histamine, calcium, magnesium, ATP, ADP, pyrophosphate and membrane lysosomal proteins. tmpzr1t_l9r_go_relaxed.owl bull's eye body|platelet dense body cellular_component owl:Class GO:0072196 biolink:NamedThing proximal/distal pattern formation involved in pronephric nephron development The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis of the pronephros. tmpzr1t_l9r_go_relaxed.owl pronephros proximal/distal pattern formation mah 2010-03-01T02:11:07Z biological_process owl:Class GO:0072047 biolink:NamedThing proximal/distal pattern formation involved in nephron development The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis of a nephron. The proximal/distal axis is defined by a line that runs from the center of the kidney (proximal end) outward (distal end). tmpzr1t_l9r_go_relaxed.owl proximal/distal nephron patterning|proximal-distal pattern formation involved in nephron development mah 2010-01-25T03:30:48Z biological_process owl:Class GO:1900267 biolink:NamedThing positive regulation of substance P receptor binding Any process that activates or increases the frequency, rate or extent of substance P receptor binding. tmpzr1t_l9r_go_relaxed.owl upregulation of neurokinin-1 receptor binding|up regulation of substance P receptor binding|up-regulation of substance P receptor ligand|activation of neurokinin-1 receptor binding|upregulation of substance P receptor ligand|up-regulation of substance P receptor binding|activation of substance P receptor binding|positive regulation of neurokinin-1 receptor binding|up-regulation of neurokinin-1 receptor binding|activation of substance P receptor ligand|positive regulation of substance P receptor ligand|upregulation of substance P receptor binding|up regulation of substance P receptor ligand|up regulation of neurokinin-1 receptor binding tb 2012-04-03T11:11:45Z biological_process owl:Class GO:1900265 biolink:NamedThing regulation of substance P receptor binding Any process that modulates the frequency, rate or extent of substance P receptor binding. tmpzr1t_l9r_go_relaxed.owl regulation of substance P receptor ligand|regulation of neurokinin-1 receptor binding tb 2012-04-03T11:11:27Z biological_process owl:Class GO:0034119 biolink:NamedThing negative regulation of erythrocyte aggregation Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte aggregation. tmpzr1t_l9r_go_relaxed.owl negative regulation of red blood cell aggregation|negative regulation of RBC aggregation biological_process owl:Class GO:0034118 biolink:NamedThing regulation of erythrocyte aggregation Any process that modulates the frequency, rate, or extent of erythrocyte aggregation. tmpzr1t_l9r_go_relaxed.owl regulation of red blood cell aggregation|regulation of RBC aggregation biological_process owl:Class GO:0099106 biolink:NamedThing ion channel regulator activity Modulates the activity of a channel via direct interaction with it. A channel catalyzes energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140456 biolink:NamedThing initial meiotic spindle pole body separation The release of duplicated meiotic spindle pole bodies (SPBs). tmpzr1t_l9r_go_relaxed.owl meiotic spindle pole body duplication|initial spindle pole body separation involved in meiosis I https://github.com/geneontology/go-ontology/issues/17971 pg 2020-04-22T19:07:22Z biological_process owl:Class GO:0042666 biolink:NamedThing negative regulation of ectodermal cell fate specification Any process that restricts, stops or prevents a cell from specifying into an ectoderm cell. tmpzr1t_l9r_go_relaxed.owl suppression of ectoderm cell fate|suppression of ectodermal cell fate|negative regulation of ectoderm cell fate specification|inhibition of ectodermal cell fate specification|down-regulation of ectodermal cell fate specification|down regulation of ectodermal cell fate specification|downregulation of ectodermal cell fate specification biological_process owl:Class GO:0046833 biolink:NamedThing positive regulation of RNA export from nucleus Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl activation of RNA export from nucleus|positive regulation of RNA transport from nucleus to cytoplasm|up regulation of RNA export from nucleus|up-regulation of RNA export from nucleus|positive regulation of RNA-nucleus export|upregulation of RNA export from nucleus|stimulation of RNA export from nucleus|positive regulation of RNA export out of nucleus|positive regulation of RNA export from cell nucleus biological_process owl:Class GO:0046831 biolink:NamedThing regulation of RNA export from nucleus Any process that modulates the frequency, rate or extent of the directed movement of RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl regulation of RNA transport from nucleus to cytoplasm|regulation of RNA export from cell nucleus|regulation of RNA-nucleus export|regulation of RNA export out of nucleus biological_process owl:Class GO:1902571 biolink:NamedThing regulation of serine-type peptidase activity Any process that modulates the frequency, rate or extent of serine-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of serine protease activity krc 2013-12-10T18:16:58Z biological_process owl:Class GO:1905816 biolink:NamedThing negative regulation of dorsal/ventral axon guidance Any process that stops, prevents or reduces the frequency, rate or extent of dorsal/ventral axon guidance. tmpzr1t_l9r_go_relaxed.owl down-regulation of dorsal/ventral axon pathfinding|down regulation of dorsal-ventral axon guidance|negative regulation of dorsal/ventral axon pathfinding|down-regulation of dorsal-ventral axon guidance|inhibition of dorsal-ventral axon guidance|downregulation of dorsoventral axon guidance|inhibition of dorsal/ventral axon pathfinding|down regulation of dorsal/ventral axon pathfinding|inhibition of dorsal/ventral axon guidance|down-regulation of dorsal/ventral axon guidance|negative regulation of dorsal-ventral axon guidance|inhibition of dorsoventral axon guidance|down regulation of dorsoventral axon guidance|downregulation of dorsal/ventral axon guidance|negative regulation of dorsoventral axon guidance|downregulation of dorsal-ventral axon guidance|down regulation of dorsal/ventral axon guidance|down-regulation of dorsoventral axon guidance|downregulation of dorsal/ventral axon pathfinding hbye 2017-01-12T13:38:53Z biological_process owl:Class GO:0031944 biolink:NamedThing negative regulation of glucocorticoid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids. tmpzr1t_l9r_go_relaxed.owl inhibition of glucocorticoid metabolic process|negative regulation of glucocorticoid metabolism|downregulation of glucocorticoid metabolic process|down-regulation of glucocorticoid metabolic process|down regulation of glucocorticoid metabolic process biological_process owl:Class GO:0045939 biolink:NamedThing negative regulation of steroid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving steroids. tmpzr1t_l9r_go_relaxed.owl down regulation of steroid metabolic process|downregulation of steroid metabolic process|down-regulation of steroid metabolic process|inhibition of steroid metabolic process|negative regulation of steroid metabolism biological_process owl:Class GO:0034409 biolink:NamedThing ascospore wall (1->3)-beta-D-glucan metabolic process The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall 1,3-beta-D-glucan metabolic process|ascospore wall 1,3-beta-glucan metabolic process|ascospore wall 1,3-beta-glucan metabolism|ascospore wall beta-1,3 glucan metabolism|ascospore wall beta-1,3 glucan metabolic process biological_process owl:Class GO:0071969 biolink:NamedThing fungal-type cell wall (1->3)-beta-D-glucan metabolic process The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of fungi. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall 1,3-beta-glucan metabolism|fungal-type cell wall 1,3-beta-D-glucan metabolic process|fungal-type cell wall beta-1,3 glucan metabolism|fungal-type cell wall beta-1,3 glucan metabolic process mah 2010-10-18T03:25:38Z biological_process owl:Class GO:0051952 biolink:NamedThing regulation of amine transport Any process that modulates the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007476 biolink:NamedThing imaginal disc-derived wing morphogenesis The process in which the anatomical structures of the imaginal disc-derived wing are generated and organized. The wing is an appendage modified for flying. tmpzr1t_l9r_go_relaxed.owl wing morphogenesis biological_process owl:Class GO:0035114 biolink:NamedThing imaginal disc-derived appendage morphogenesis The process in which the anatomical structures of appendages are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047481 biolink:NamedThing D-alanine-alanyl-poly(glycerolphosphate) ligase activity Catalysis of the reaction: alanyl-poly(glycerolphosphate) + D-alanine + ATP = D-alanyl-alanyl-poly(glycerolphosphate) + phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl D-alanine:alanyl-poly(glycerolphosphate) ligase (ADP-forming)|D-alanyl-alanyl-poly(glycerolphosphate) synthetase activity|D-alanyl-poly(phosphoglycerol) synthetase activity|D-alanine:membrane-acceptor ligase activity|D-alanine-membrane acceptor-ligase activity|D-alanylalanylpoly(phosphoglycerol) synthetase activity EC:6.3.2.16|MetaCyc:6.3.2.16-RXN molecular_function owl:Class GO:0052915 biolink:NamedThing 23S rRNA (guanine(2445)-N(2))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(2445) in 23S rRNA = N(2)-methylguanosine(2445) in 23S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:42740|EC:2.1.1.173|KEGG_REACTION:R07234|MetaCyc:RXN-11574 molecular_function owl:Class GO:0098928 biolink:NamedThing presynaptic signal transduction Signal transduction in which the initial step occurs in a presynapse. tmpzr1t_l9r_go_relaxed.owl presynaptic signaling pathway Do not directly annotate. This term intended for grouping. Annotate to either a subclass or to some other subclass of signal transduction extended with has_start_location/occurs_in presynapse or one of its parts. Such extensions will result in automatic annotation to this term. biological_process owl:Class GO:1901309 biolink:NamedThing negative regulation of sterol regulatory element binding protein cleavage Any process that stops, prevents or reduces the frequency, rate or extent of sterol regulatory element binding protein cleavage. tmpzr1t_l9r_go_relaxed.owl downregulation of sterol regulatory element binding protein cleavage|inhibition of SREBP cleavage|down-regulation of sterol regulatory element binding protein cleavage|downregulation of SREBP cleavage|down regulation of sterol regulatory element binding protein cleavage|down regulation of SREBP cleavage|inhibition of SREBP processing|inhibition of sterol regulatory element binding protein cleavage|down-regulation of SREBP cleavage|negative regulation of SREBP cleavage bf 2012-08-21T16:43:32Z biological_process owl:Class GO:2000639 biolink:NamedThing negative regulation of SREBP signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of SREBP-mediated signalling pathway|negative regulation of SREBP-mediated signaling pathway vk 2011-04-20T02:46:02Z biological_process owl:Class GO:1903744 biolink:NamedThing positive regulation of anterograde synaptic vesicle transport Any process that activates or increases the frequency, rate or extent of anterograde synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl upregulation of anterograde synaptic vesicle transport|up regulation of anterograde synaptic vesicle transport|up-regulation of anterograde synaptic vesicle transport|activation of anterograde synaptic vesicle transport kmv 2014-12-12T16:28:46Z biological_process owl:Class GO:0031352 biolink:NamedThing intrinsic component of plastid inner membrane The component of the plastid inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to plastid inner membrane cellular_component owl:Class GO:0051588 biolink:NamedThing regulation of neurotransmitter transport Any process that modulates the frequency, rate or extent of the directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019560 biolink:NamedThing histidine catabolic process to hydantoin-5-propionate The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including hydantoin-5-propionate. tmpzr1t_l9r_go_relaxed.owl histidine degradation to hydantoin-5-propionate|histidine breakdown to hydantoin-5-propionate MetaCyc:HISHP-PWY biological_process owl:Class GO:0018900 biolink:NamedThing dichloromethane metabolic process The chemical reactions and pathways involving dichloromethane, a dichlorinated derivative of methane. It is a colorless organic liquid with a sweet, chloroform-like odor, often used as a paint remover. tmpzr1t_l9r_go_relaxed.owl dichloromethane metabolism UM-BBD_pathwayID:dcm biological_process owl:Class GO:0042197 biolink:NamedThing halogenated hydrocarbon metabolic process The chemical reactions and pathways involving halogenated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with halogen atoms. Halogens include fluorine, chlorine, bromine and iodine. tmpzr1t_l9r_go_relaxed.owl halogenated hydrocarbon metabolism biological_process owl:Class GO:0047734 biolink:NamedThing CDP-glycerol diphosphatase activity Catalysis of the reaction: CDP-glycerol + H(2)O = sn-glycerol 3-phosphate + CMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl CDP-glycerol pyrophosphatase activity|cytidine diphosphoglycerol pyrophosphatase activity|CDP-glycerol phosphoglycerohydrolase activity|CDPglycerol diphosphatase activity|CDPglycerol pyrophosphatase activity|CDPglycerol phosphoglycerohydrolase activity MetaCyc:CDP-GLYCEROL-PYROPHOSPHATASE-RXN|EC:3.6.1.16|KEGG_REACTION:R00855|RHEA:21692 molecular_function owl:Class GO:0045321 biolink:NamedThing leukocyte activation A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl immune cell activation|leucocyte activation Wikipedia:Immunologic_activation biological_process owl:Class GO:0033305 biolink:NamedThing chlorophyll a biosynthetic process The chemical reactions and pathways leading to the formation of chlorophyll a. tmpzr1t_l9r_go_relaxed.owl chlorophyll a formation|chlorophyll a anabolism|chlorophyll a synthesis|chlorophyll a biosynthesis biological_process owl:Class GO:0033304 biolink:NamedThing chlorophyll a metabolic process The chemical reactions and pathways involving chlorophyll a. tmpzr1t_l9r_go_relaxed.owl chlorophyll a metabolism biological_process owl:Class GO:0055052 biolink:NamedThing ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing A complex for the transport of metabolites into the cell, consisting of 5 subunits: two ATP-binding subunits, two membrane spanning subunits, and one substrate-binding subunit. In organisms with two membranes, the substrate-binding protein moves freely in the periplasmic space and joins the other subunits only when bound with substrate. In organisms with only one membrane the substrate-binding protein is tethered to the cytoplasmic membrane and associated with the other subunits. Transport of the substrate across the membrane is driven by the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043190 biolink:NamedThing ATP-binding cassette (ABC) transporter complex A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter. tmpzr1t_l9r_go_relaxed.owl ABC-type uptake permease complex|ABC-type efflux porter complex|ABC-type efflux permease complex|mating pheromone exporter GO:0043192|GO:0043191 cellular_component owl:Class GO:0110161 biolink:NamedThing positive regulation of mitotic spindle formation (spindle phase one) Any process that activates or increases the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase one). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:21:08Z biological_process owl:Class GO:1905832 biolink:NamedThing positive regulation of spindle assembly Any process that activates or increases the frequency, rate or extent of spindle assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of spindle assembly|up-regulation of spindle biosynthesis|upregulation of bipolar spindle biosynthesis|positive regulation of bipolar spindle formation|activation of spindle biosynthesis|activation of spindle formation|upregulation of spindle formation|positive regulation of spindle formation|up-regulation of bipolar spindle formation|activation of bipolar spindle biosynthesis|activation of bipolar spindle formation|up regulation of bipolar spindle formation|upregulation of spindle biosynthesis|up-regulation of spindle formation|upregulation of spindle assembly|upregulation of bipolar spindle formation|up-regulation of bipolar spindle biosynthesis|positive regulation of bipolar spindle biosynthesis|up regulation of spindle formation|positive regulation of spindle biosynthesis|up regulation of bipolar spindle biosynthesis|up regulation of spindle biosynthesis|activation of spindle assembly|up-regulation of spindle assembly hbye 2017-01-17T10:26:46Z biological_process owl:Class GO:0035216 biolink:NamedThing haltere disc development Progression of the haltere imaginal disc over time, from its initial formation through to its metamorphosis to form the adult capitellum, pedicel, haltere sclerite, metathoracic spiracle and metanotum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003865 biolink:NamedThing 3-oxo-5-alpha-steroid 4-dehydrogenase activity Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl delta4-3-oxosteroid-5alpha-reductase|steroid 5 alpha reductase|4-ene-3-ketosteroid-5alpha-oxidoreductase activity|delta4-5alpha-dehydrogenase activity|3-keto-delta4-steroid-5alpha-reductase activity|delta4-3-oxo steroid reductase activity|3-oxo-5alpha-steroid 4-dehydrogenase activity|delta4-3-keto steroid 5alpha-reductase activity|3-oxo-5alpha-steroid:acceptor delta4-oxidoreductase activity|3-oxo-5alpha-steroid:(acceptor) delta4-oxidoreductase activity|testosterone 5alpha-reductase|steroid delta4-5alpha-reductase activity|5alpha-reductase|steroid 5alpha-reductase|steroid 5-alpha-reductase activity|3-oxo-5alpha-steroid delta4-dehydrogenase activity|3-oxosteroid delta4-dehydrogenase|delta4-3-ketosteroid5alpha-oxidoreductase activity EC:1.3.99.5|Reactome:R-HSA-9705714|MetaCyc:1.3.99.5-RXN|Reactome:R-HSA-469659|Reactome:R-HSA-9705713 molecular_function owl:Class GO:0033765 biolink:NamedThing steroid dehydrogenase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor, and in which one substrate is a sterol derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009106 biolink:NamedThing lipoate metabolic process The chemical reactions and pathways involving lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. tmpzr1t_l9r_go_relaxed.owl lipoic acid metabolic process|lipoic acid metabolism|lipoate metabolism GO:0000273 biological_process owl:Class GO:0039708 biolink:NamedThing nuclear capsid assembly The assembly of a virus capsid that occurs in the nucleus. The assembly of large icosahedral shells for herpesviridae and adenoviridae requires structural proteins that act as chaperones for assembly. tmpzr1t_l9r_go_relaxed.owl VZ:1516 bf 2013-11-28T15:08:41Z biological_process owl:Class GO:0019069 biolink:NamedThing viral capsid assembly The assembly of a virus capsid from its protein subunits. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047237 biolink:NamedThing glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: D-glucuronyl-1,3-beta-D-galactosylproteoglycan + UDP-N-acetylgalactosamine = N-acetyl-D-galactosaminyl-1,4-beta-D-glucuronyl-1,3-beta-D-galactosylproteoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosaminyltransferase I activity|UDP-N-acetyl-D-galactosamine:D-glucuronyl-1,3-beta-D-galactosyl-proteoglycan beta-1,4-N-acetylgalactosaminyltransferase activity|glucuronylgalactosylproteoglycan beta-1,4-N-acetylgalactosaminyltransferase activity|uridine diphosphoacetylgalactosamine-chondroitin acetylgalactosaminyltransferase I|uridine diphosphoacetylgalactosamine-chondroitinacetylgalactosaminyltransferase I activity EC:2.4.1.174|MetaCyc:2.4.1.174-RXN|RHEA:23464 molecular_function owl:Class GO:1904226 biolink:NamedThing regulation of glycogen synthase activity, transferring glucose-1-phosphate Any process that modulates the frequency, rate or extent of glycogen synthase activity, transferring glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl rl 2015-05-15T09:23:08Z biological_process owl:Class GO:0001505 biolink:NamedThing regulation of neurotransmitter levels Any process that modulates levels of neurotransmitter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102500 biolink:NamedThing beta-maltose 4-alpha-glucanotransferase activity Catalysis of the reaction: beta-D-glucose + a plant soluble heteroglycan = a plant soluble heteroglycan + maltose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14354|EC:2.4.1.25 molecular_function owl:Class GO:0102773 biolink:NamedThing dihydroceramide kinase activity Catalysis of the reaction: ATP + a dihydroceramide = ADP + H+ + a dihydroceramide 1-phosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.7.1.138|MetaCyc:RXN-7799 molecular_function owl:Class GO:0009074 biolink:NamedThing aromatic amino acid family catabolic process The chemical reactions and pathways resulting in the breakdown of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). tmpzr1t_l9r_go_relaxed.owl aromatic amino acid family catabolism|aromatic amino acid family degradation|aromatic amino acid family breakdown biological_process owl:Class GO:0043945 biolink:NamedThing positive regulation of asexual sporulation resulting in formation of a cellular spore Any process that activates, maintains or increases the frequency, rate or extent of the formation of a cellular spore derived from the products of mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050820 biolink:NamedThing positive regulation of coagulation Any process that activates or increases the frequency, rate or extent of coagulation. tmpzr1t_l9r_go_relaxed.owl up regulation of coagulation|activation of coagulation|stimulation of coagulation|upregulation of coagulation|up-regulation of coagulation|positive regulation of clotting biological_process owl:Class GO:0015538 biolink:NamedThing sialic acid:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sialate(out) + H+(out) = sialate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl sialic acid:hydrogen symporter activity|sialic acid permease activity Reactome:R-HSA-428585|RHEA:28987|Reactome:R-HSA-5624239 molecular_function owl:Class GO:0006257 biolink:NamedThing dUDP catabolic process The chemical reactions and pathways resulting in the breakdown of dUDP, deoxyuridine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl dUDP breakdown|dUDP degradation|dUDP catabolism biological_process owl:Class GO:0009198 biolink:NamedThing pyrimidine deoxyribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside diphosphate breakdown|pyrimidine deoxyribonucleoside diphosphate catabolism|pyrimidine deoxyribonucleoside diphosphate degradation biological_process owl:Class GO:0004185 biolink:NamedThing serine-type carboxypeptidase activity Catalysis of the hydrolysis of a single C-terminal amino acid residue from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl serine carboxypeptidase activity https://github.com/geneontology/go-ontology/issues/19681 EC:3.4.16.-|Reactome:R-HSA-158251 molecular_function owl:Class GO:0032541 biolink:NamedThing cortical endoplasmic reticulum A cortical network of highly dynamic tubules that are juxtaposed to the plasma membrane and undergo ring closure and tubule-branching movements. tmpzr1t_l9r_go_relaxed.owl ER-PM peripheral junction|peripheral endoplasmic reticulum|cortical ER|peripheral ER The dynamic nature of the cortical ER and the movements it undergoes (branching and ring closure) has been shown in both yeast and mammalian cells, so appears highly conserved. (PMID:10931860) cellular_component owl:Class GO:0071782 biolink:NamedThing endoplasmic reticulum tubular network A subcompartment of the endoplasmic reticulum consisting of tubules having membranes with high curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl ER tubular network mah 2010-09-01T01:32:55Z cellular_component owl:Class GO:0042944 biolink:NamedThing D-alanine transmembrane transporter activity Enables the transfer of D-alanine from one side of a membrane to the other. D-alanine is the D-enantiomer of 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-alanine transporter activity molecular_function owl:Class GO:0022858 biolink:NamedThing alanine transmembrane transporter activity Enables the transfer of alanine from one side of a membrane to the other. Alanine is 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000336 biolink:NamedThing positive regulation of transposition, DNA-mediated Any process that activates or increases the frequency, rate or extent of DNA transposition. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA transposition|upregulation of DNA transposition|up regulation of DNA transposition|stimulation of DNA transposition|positive regulation of DNA transposition|activation of DNA transposition biological_process owl:Class GO:0006144 biolink:NamedThing purine nucleobase metabolic process The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. tmpzr1t_l9r_go_relaxed.owl purine base metabolism|purine base metabolic process|purine metabolic process|purine metabolism biological_process owl:Class GO:0072521 biolink:NamedThing purine-containing compound metabolic process The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl purine-containing compound metabolism|purine and derivative metabolic process mah 2011-01-04T03:03:59Z biological_process owl:Class GO:1900191 biolink:NamedThing negative regulation of single-species biofilm formation Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl down regulation of single-species biofilm formation|inhibition of single-species biofilm formation|downregulation of single-species biofilm formation|down-regulation of single-species biofilm formation di 2012-03-19T12:42:13Z biological_process owl:Class GO:1904440 biolink:NamedThing positive regulation of iron ion import across plasma membrane Any process that activates or increases the frequency, rate or extent of iron ions import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of ferrous iron import across plasma membrane|upregulation of ferrous ion import into cell|activation of ferrous ion import into cell|up regulation of ferrous iron import across plasma membrane|activation of ferrous iron import across plasma membrane|up regulation of ferrous ion import into cell|positive regulation of ferrous iron import into cell|upregulation of ferrous iron import across plasma membrane|up-regulation of ferrous ion import into cell|positive regulation of ferrous ion import into cell|up-regulation of ferrous iron import across plasma membrane rl 2015-07-06T13:50:04Z GO:1903991 biological_process owl:Class GO:0034761 biolink:NamedThing positive regulation of iron ion transmembrane transport Any process that activates or increases the frequency, rate or extent of the directed movement of iron ions from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of transmembrane iron ion transport|positive regulation of iron ion membrane transport|up-regulation of transmembrane iron ion transport|activation of transmembrane iron ion transport|positive regulation of transmembrane iron transport|upregulation of transmembrane iron ion transport|positive regulation of transmembrane iron ion transport|up regulation of transmembrane iron ion transport biological_process owl:Class GO:1900243 biolink:NamedThing negative regulation of synaptic vesicle endocytosis Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle endocytosis. tmpzr1t_l9r_go_relaxed.owl down regulation of synaptic vesicle endocytosis|down regulation of synaptic vesicle retrieval|downregulation of synaptic vesicle endocytosis|inhibition of synaptic vesicle retrieval|down-regulation of synaptic vesicle retrieval|inhibition of synaptic vesicle endocytosis|downregulation of synaptic vesicle retrieval|down-regulation of synaptic vesicle endocytosis|negative regulation of synaptic vesicle retrieval rl 2012-03-28T01:40:36Z biological_process owl:Class GO:0033505 biolink:NamedThing floor plate morphogenesis The process in which the anatomical structure of the floor plate is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072542 biolink:NamedThing protein phosphatase activator activity Binds to and increases the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. tmpzr1t_l9r_go_relaxed.owl protein phosphatase 2 activator activity|protein phosphatase type 1 activator activity|protein phosphatase type 2A activator activity mah 2010-09-10T03:39:56Z GO:0071862|GO:0072543 molecular_function owl:Class GO:0019888 biolink:NamedThing protein phosphatase regulator activity Binds to and modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. tmpzr1t_l9r_go_relaxed.owl protein phosphatase type 4, intrinsic regulator activity|protein phosphatase type 1 regulator activity|protein phosphatase type 2A, intrinsic regulator activity|protein phosphatase type 2B regulator activity|protein phosphatase 3 regulator activity|protein phosphatase 3, intrinsic regulator activity|protein phosphatase 2, intrinsic regulator activity|protein phosphatase type 2A regulator activity|protein phosphatase type 4 regulator activity|calcineurin, intrinsic regulator activity|protein phosphatase type 1, intrinsic regulator activity|protein phosphatase 2 regulator activity|calcineurin regulator activity|protein phosphatase type 2B, intrinsic regulator activity Reactome:R-HSA-180038 GO:0008601|GO:0030362|GO:0030359|GO:0008599 molecular_function owl:Class GO:0071019 biolink:NamedThing U12-type post-mRNA release spliceosomal complex A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and the U12, U5 and U6atac snRNPs. tmpzr1t_l9r_go_relaxed.owl AT-AC post-mRNA release spliceosomal complex|mammalian U12-type spliceosomal complex I|minor post-mRNA release spliceosomal complex mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0071014 biolink:NamedThing post-mRNA release spliceosomal complex A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal complex I mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0090290 biolink:NamedThing positive regulation of osteoclast proliferation Any process that increases the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-18T03:11:03Z biological_process owl:Class GO:1903973 biolink:NamedThing negative regulation of cellular response to macrophage colony-stimulating factor stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to M-CSF stimulus|down-regulation of cellular response to macrophage colony-stimulating factor stimulus|negative regulation of cellular response to macrophage colony-stimulating factor|downregulation of cellular response to macrophage colony-stimulating factor|downregulation of cellular response to M-CSF stimulus|inhibition of cellular response to macrophage colony-stimulating factor|down regulation of cellular response to macrophage colony-stimulating factor stimulus|downregulation of cellular response to macrophage colony-stimulating factor stimulus|down regulation of cellular response to M-CSF stimulus|inhibition of cellular response to M-CSF stimulus|negative regulation of cellular response to M-CSF stimulus|down regulation of cellular response to macrophage colony-stimulating factor|inhibition of cellular response to macrophage colony-stimulating factor stimulus|down-regulation of cellular response to macrophage colony-stimulating factor nc 2015-03-02T14:50:20Z biological_process owl:Class GO:0000910 biolink:NamedThing cytokinesis The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis involved in cell cycle|cell cycle cytokinesis Wikipedia:Cytokinesis Note that this term should not be used for direct annotation. When annotating eukaryotic species, mitotic or meiotic cytokinesis should always be specified for manual annotation and for prokaryotic species use 'FtsZ-dependent cytokinesis ; GO:0043093' or Cdv-dependent cytokinesis ; GO:0061639. Also, note that cytokinesis does not necessarily result in physical separation and detachment of the two daughter cells from each other. GO:0007104|GO:0033205|GO:0016288 biological_process owl:Class GO:0097044 biolink:NamedThing histone H3-K56 acetylation in response to DNA damage The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 56 of the histone as a result of the detection of DNA damage within a cell. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-19T05:22:54Z biological_process owl:Class GO:0097043 biolink:NamedThing histone H3-K56 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 56 of the histone. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-19T05:18:29Z biological_process owl:Class GO:0099533 biolink:NamedThing positive regulation of presynaptic cytosolic calcium concentration Any process that increases the concentration of calcium ions in the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007204 biolink:NamedThing positive regulation of cytosolic calcium ion concentration Any process that increases the concentration of calcium ions in the cytosol. tmpzr1t_l9r_go_relaxed.owl elevation of calcium ion concentration in cytosol|cytosolic calcium ion concentration elevation|elevation of cytosolic calcium ion concentration|elevation of calcium ion concentration in cytoplasm|elevation of cytoplasmic calcium ion concentration|cytoplasmic calcium ion concentration elevation biological_process owl:Class GO:0002906 biolink:NamedThing negative regulation of mature B cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of mature B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of mature B cell apoptosis|down-regulation of mature B cell apoptosis|inhibition of mature B cell apoptosis|down regulation of mature B cell apoptosis|negative regulation of mature B cell apoptosis biological_process owl:Class GO:0002905 biolink:NamedThing regulation of mature B cell apoptotic process Any process that modulates the frequency, rate, or extent of mature B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of mature B cell apoptosis biological_process owl:Class GO:0019255 biolink:NamedThing glucose 1-phosphate metabolic process The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1. tmpzr1t_l9r_go_relaxed.owl glucose 1-phosphate metabolism|glucose 1-phosphate utilization MetaCyc:GLUCOSE1PMETAB-PWY GO:0006008 biological_process owl:Class GO:0046308 biolink:NamedThing Z-phenylacetaldoxime catabolic process The chemical reactions and pathways resulting in the breakdown of Z-phenylacetaldoxime, a member of the glucosinolate group of compounds. tmpzr1t_l9r_go_relaxed.owl Z-phenylacetaldoxime catabolism|Z-phenylacetaldoxime degradation|Z-phenylacetaldoxime breakdown biological_process owl:Class GO:0018983 biolink:NamedThing Z-phenylacetaldoxime metabolic process The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants. tmpzr1t_l9r_go_relaxed.owl Z-phenylacetaldoxime metabolism UM-BBD_pathwayID:pao biological_process owl:Class GO:0019400 biolink:NamedThing alditol metabolic process The chemical reactions and pathways involving alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. tmpzr1t_l9r_go_relaxed.owl alditol metabolism biological_process owl:Class GO:0019751 biolink:NamedThing polyol metabolic process The chemical reactions and pathways involving a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. tmpzr1t_l9r_go_relaxed.owl polyhydric alcohol metabolic process|polyol metabolism biological_process owl:Class GO:0072134 biolink:NamedThing nephrogenic mesenchyme morphogenesis The process in which the anatomical structures of a nephrogenic mesenchymal tissue are generated and organized. Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:21:16Z biological_process owl:Class GO:0072131 biolink:NamedThing kidney mesenchyme morphogenesis The process in which the anatomical structures of a kidney mesenchymal tissue are generated and organized. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:16:43Z biological_process owl:Class GO:0034681 biolink:NamedThing integrin alpha11-beta1 complex An integrin complex that comprises one alpha11 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha11-beta1 integrin complex|ITGA11-ITGB1 complex cellular_component owl:Class GO:0033313 biolink:NamedThing meiotic cell cycle checkpoint signaling A signaling process that contributes to a meiotic cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a meiotic cell cycle until conditions are suitable for the cell to proceed to the next stage. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in meiotic cell cycle checkpoint|meiotic cell cycle checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072411 biological_process owl:Class GO:0000075 biolink:NamedThing cell cycle checkpoint signaling A signaling process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. tmpzr1t_l9r_go_relaxed.owl G2/M checkpoint|signal transduction involved in cell cycle checkpoint|cell cycle checkpoint|G1/S checkpoint|signal transduction involved in G2/M transition checkpoint|G1/S transition checkpoint|G2/M transition checkpoint https://github.com/geneontology/go-ontology/issues/20935 Wikipedia:Cell_cycle_checkpoint This term should not be used in direct manual annotation as it should always be possible to minimally designate mitotic or meiotic checkpoint, and usually to additionally specify the checkpoint (i.e mitotic spindle assembly checkpoint, mitotic DNA damage checkpoint etc). Note also that the effector processes are not part of the checkpoint but are positively regulated by the checkpoint signaling and should not be annotated here. GO:0071779|GO:0072395|GO:0031576|GO:0072407|GO:0072404 biological_process owl:Class GO:0005222 biolink:NamedThing intracellular cAMP-activated cation channel activity Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl intracellular adenosine 3',5'-cyclophosphate activated cation channel activity|intracellular cAMP activated cation channel activity|intracellular 3',5' cAMP activated cation channel activity|HCN channel activity|intracellular 3',5'-cAMP activated cation channel activity|hyperpolarization-activated cyclic nucleotide-gated channel activity|intracellular cyclic AMP activated cation channel activity molecular_function owl:Class GO:0005221 biolink:NamedThing intracellular cyclic nucleotide activated cation channel activity Enables the transmembrane transfer of a cation by a channel that opens when intracellular cyclic nucleotide has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2514867 molecular_function owl:Class GO:1902267 biolink:NamedThing regulation of polyamine transmembrane transport Any process that modulates the frequency, rate or extent of polyamine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl mcc 2013-06-28T21:34:36Z biological_process owl:Class GO:0140314 biolink:NamedThing calcium ion sequestering activity The selective interaction of a protein with a calcium ion to prevent it from interacting with other partners or inhibiting its localization to other areas of the cell. tmpzr1t_l9r_go_relaxed.owl pg 2019-03-28T10:07:18Z molecular_function owl:Class GO:1905691 biolink:NamedThing lipid droplet disassembly The disaggregation of a lipid particle into its constituent components. tmpzr1t_l9r_go_relaxed.owl lipid body disassembly|lipid droplet reserve breakdown|lipid particle disassembly|adiposome disassembly pr 2016-11-14T13:39:06Z biological_process owl:Class GO:1901046 biolink:NamedThing positive regulation of oviposition Any process that activates or increases the frequency, rate or extent of oviposition. tmpzr1t_l9r_go_relaxed.owl activation of egg-laying|upregulation of egg laying|up regulation of egg-laying|positive regulation of egg-laying|up regulation of oviposition|up-regulation of oviposition|upregulation of oviposition|activation of egg laying|activation of oviposition|upregulation of egg-laying|positive regulation of egg laying|up regulation of egg laying|up-regulation of egg laying|up-regulation of egg-laying kmv 2012-06-27T06:20:20Z biological_process owl:Class GO:0046776 biolink:NamedThing suppression by virus of host antigen processing and presentation of peptide antigen via MHC class I Any viral process that inhibits a host antigen-presenting cell expressing a peptide antigen on its cell surface in association with an MHC class I transmembrane protein complex. One mechanism of suppression is by direct inhibition of host tapasin, a type I transmembrane protein essential for the optimal expression of stable MHC class I molecules on the host cell surface. By inhibiting host tapasin activity, viruses can prevent presentation of their antigens at the cell surface, and thereby evade the host anti-viral immune response. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host MHC class I cell surface presentation|inhibition of host MHC class I molecule presentation by virus|suppression by virus of MHC class I cell surface presentation in host|suppression by virus of host tapasin activity|negative regulation by virus of MHC class I cell surface presentation https://github.com/geneontology/go-ontology/issues/22150 GO:0039591 biological_process owl:Class GO:0060967 biolink:NamedThing negative regulation of gene silencing by RNA Any process that decreases the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-05T03:21:05Z biological_process owl:Class GO:0060257 biolink:NamedThing negative regulation of flocculation Any process that decreases the rate, frequency or extent of the non-sexual aggregation of single-celled organisms. tmpzr1t_l9r_go_relaxed.owl negative regulation of coflocculation https://github.com/geneontology/go-ontology/issues/20192|https://github.com/geneontology/go-ontology/issues/18785 al 2012-07-12T07:17:11Z GO:1901134 biological_process owl:Class GO:0061114 biolink:NamedThing branching involved in pancreas morphogenesis The process in which the branches of the pancreas are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-05T12:03:04Z biological_process owl:Class GO:2000512 biolink:NamedThing negative regulation of granzyme A production Any process that stops, prevents or reduces the frequency, rate or extent of granzyme A production. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:31:32Z biological_process owl:Class GO:0018482 biolink:NamedThing 4-formylbenzenesulfonate dehydrogenase activity Catalysis of the reaction: 4-formylbenzenesulfonate + H(2)O + NAD(+) = 4-sulfobenzoate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl toluene-sulfonate aldehyde dehydrogenase activity|4-formylbenzenesulfonate:NAD+ oxidoreductase activity|4-formylbenzenesulphonate dehydrogenase activity KEGG_REACTION:R05272|RHEA:18833|UM-BBD_reactionID:r0292|EC:1.2.1.62|MetaCyc:1.2.1.62-RXN molecular_function owl:Class GO:0071248 biolink:NamedThing cellular response to metal ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to heavy metal|cellular response to metal mah 2009-12-03T02:46:31Z biological_process owl:Class GO:0010038 biolink:NamedThing response to metal ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. tmpzr1t_l9r_go_relaxed.owl heavy metal sensitivity/resistance|response to heavy metal|response to metal biological_process owl:Class GO:1900127 biolink:NamedThing positive regulation of hyaluronan biosynthetic process Any process that activates or increases the frequency, rate or extent of hyaluronan biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of hyaluronan formation|activation of hyaluronan anabolism|activation of hyaluronan formation|activation of hyaluronan biosynthetic process|up-regulation of hyaluronan biosynthetic process|upregulation of hyaluronan formation|up regulation of hyaluronan synthesis|up regulation of hyaluronan formation|activation of hyaluronan synthesis|upregulation of hyaluronan biosynthesis|upregulation of hyaluronan anabolism|up-regulation of hyaluronan anabolism|up regulation of hyaluronan biosynthesis|up regulation of hyaluronan biosynthetic process|up-regulation of hyaluronan biosynthesis|up regulation of hyaluronan anabolism|positive regulation of hyaluronan formation|positive regulation of hyaluronan anabolism|positive regulation of hyaluronan synthesis|up-regulation of hyaluronan synthesis|positive regulation of hyaluronan biosynthesis|upregulation of hyaluronan synthesis|activation of hyaluronan biosynthesis|upregulation of hyaluronan biosynthetic process yaf 2012-02-23T01:09:33Z biological_process owl:Class GO:0045913 biolink:NamedThing positive regulation of carbohydrate metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving carbohydrate. tmpzr1t_l9r_go_relaxed.owl up regulation of carbohydrate metabolic process|up-regulation of carbohydrate metabolic process|activation of carbohydrate metabolic process|upregulation of carbohydrate metabolic process|stimulation of carbohydrate metabolic process|positive regulation of carbohydrate metabolism biological_process owl:Class GO:0102366 biolink:NamedThing 7-beta-hydroxytaxusin 2-alpha-hydroxylase activity Catalysis of the reaction: 7-beta-hydroxytaxusin + NADPH + O2 + H+ = 2alpha, 7-beta-dihydroxytaxusin + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13487 molecular_function owl:Class GO:1901946 biolink:NamedThing miltiradiene biosynthetic process The chemical reactions and pathways resulting in the formation of miltiradiene. tmpzr1t_l9r_go_relaxed.owl miltiradiene anabolism|miltiradiene biosynthesis|miltiradiene synthesis|miltiradiene formation ms 2013-02-18T15:50:32Z biological_process owl:Class GO:0042647 biolink:NamedThing proplastid nucleoid The region of a proplastid to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009295 biolink:NamedThing nucleoid The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nucleoid cellular_component owl:Class GO:0098555 biolink:NamedThing lumenal side of rough endoplasmic reticulum membrane The side (leaflet) of the rough endoplasmic reticulum membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:13:24Z cellular_component owl:Class GO:0098553 biolink:NamedThing lumenal side of endoplasmic reticulum membrane The side (leaflet) of the plasma membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:08:37Z cellular_component owl:Class GO:0016558 biolink:NamedThing protein import into peroxisome matrix The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. tmpzr1t_l9r_go_relaxed.owl peroxisome matrix protein import|protein transport to peroxisome matrix biological_process owl:Class GO:0044743 biolink:NamedThing protein transmembrane import into intracellular organelle The directed movement of proteins into an intracellular organelle, across a membrane. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-07T15:37:36Z biological_process owl:Class GO:0071736 biolink:NamedThing IgG immunoglobulin complex, circulating A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgG3 antibody|IgG2a antibody|IgG2 antibody|IgG2c antibody|IgG1 antibody|IgG antibody|IgG4 antibody|IgG2b antibody Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0071735 biolink:NamedThing IgG immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgG immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgG2c|IgG3|IgG4|IgG2a|IgG2b|IgG1|IgG2 Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0047174 biolink:NamedThing putrescine N-hydroxycinnamoyltransferase activity Catalysis of the reaction: caffeoyl-CoA + putrescine = N-caffeoylputrescine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl caffeoyl-CoA putrescine N-caffeoyl transferase activity|putrescine hydroxycinnamoyltransferase activity|hydroxycinnamoyl-CoA:putrescine hydroxycinnamoyltransferase activity|caffeoyl-CoA:putrescine N-(3,4-dihydroxycinnamoyl)transferase activity|putrescine hydroxycinnamoyl transferase activity|PHT KEGG_REACTION:R01944|MetaCyc:2.3.1.138-RXN|EC:2.3.1.138|RHEA:12436 molecular_function owl:Class GO:0050734 biolink:NamedThing hydroxycinnamoyltransferase activity Catalysis of the transfer of a hydroxycinnamoyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0012509 biolink:NamedThing inter-Golgi transport vesicle membrane The lipid bilayer surrounding a vesicle transporting substances within the Golgi. tmpzr1t_l9r_go_relaxed.owl inter-Golgi transport constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0030663 biolink:NamedThing COPI-coated vesicle membrane The lipid bilayer surrounding a COPI-coated vesicle. tmpzr1t_l9r_go_relaxed.owl COPI coated vesicle membrane cellular_component owl:Class GO:0080041 biolink:NamedThing ADP-ribose pyrophosphohydrolase activity Catalysis of the reaction: ADP-ribose + H2O = AMP + ribose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045241 biolink:NamedThing cytosolic alpha-ketoglutarate dehydrogenase complex Cytosolic complex that possesses alpha-ketoglutarate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate dehydrogenase complex cellular_component owl:Class GO:0045240 biolink:NamedThing dihydrolipoyl dehydrogenase complex A protein complex that possesses alpha-ketoglutarate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate dehydrogenase complex|alpha-ketoglutarate dehydrogenase complex cellular_component owl:Class GO:1903372 biolink:NamedThing negative regulation of endoplasmic reticulum tubular network organization Any process that stops, prevents or reduces the frequency, rate or extent of endoplasmic reticulum tubular network organization. tmpzr1t_l9r_go_relaxed.owl inhibition of endoplasmic reticulum tubular network organization|downregulation of ER tubular network organisation|negative regulation of endoplasmic reticulum tubular network organisation|down regulation of endoplasmic reticulum tubular network organization|negative regulation of ER tubular network organization|down regulation of ER tubular network organisation|down-regulation of endoplasmic reticulum tubular network organization|downregulation of endoplasmic reticulum tubular network organisation|downregulation of ER tubular network organization|inhibition of ER tubular network organisation|inhibition of ER tubular network organization|down regulation of endoplasmic reticulum tubular network organisation|down-regulation of endoplasmic reticulum tubular network organisation|down-regulation of ER tubular network organisation|downregulation of endoplasmic reticulum tubular network organization|down-regulation of ER tubular network organization|down regulation of ER tubular network organization|inhibition of endoplasmic reticulum tubular network organisation|negative regulation of ER tubular network organisation als 2014-08-22T11:01:23Z biological_process owl:Class GO:1900348 biolink:NamedThing regulation of methane biosynthetic process from methylamine Any process that modulates the frequency, rate or extent of methane biosynthetic process from methylamine. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:11:54Z biological_process owl:Class GO:0102709 biolink:NamedThing S-adenosyl-L-methionine:N,N-dimethyl-beta-alanine N-methyltransferase activity Catalysis of the reaction: N,N-dimethyl-beta-alanine + S-adenosyl-L-methionine = H+ + beta-alanine betaine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6464 molecular_function owl:Class GO:1904020 biolink:NamedThing regulation of G protein-coupled receptor internalization Any process that modulates the frequency, rate or extent of G protein-coupled receptor internalization. tmpzr1t_l9r_go_relaxed.owl regulation of G-protein-coupled receptor internalization pga 2015-03-10T17:10:45Z biological_process owl:Class GO:0140498 biolink:NamedThing mannan polymerase I complex A complex with alpha-(1->6)-mannosyltransferase activity, located in the cis Golgi membrane; adds mannan to N-linked glycans on proteins as part of the priming and elongation of alpha 1,6-linked Man backbone. In S. cerevisiae, contains Mnn9p and Van1p. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19817 pg 2020-07-22T14:34:23Z cellular_component owl:Class GO:0000136 biolink:NamedThing mannan polymerase complex A protein complex with alpha-(1->6)-mannosyltransferase activity, located in the cis Golgi membrane; adds mannan to N-linked glycans on proteins. tmpzr1t_l9r_go_relaxed.owl alpha-1,6-mannosyltransferase complex https://github.com/geneontology/go-ontology/issues/19817 cellular_component owl:Class GO:0050258 biolink:NamedThing riboflavinase activity Catalysis of the reaction: H(2)O + H(+) + riboflavin = D-ribitol + lumichrome. tmpzr1t_l9r_go_relaxed.owl riboflavin hydrolase activity EC:3.5.99.1|MetaCyc:RIBOFLAVINASE-RXN|KEGG_REACTION:R01732|RHEA:11408 molecular_function owl:Class GO:0043552 biolink:NamedThing positive regulation of phosphatidylinositol 3-kinase activity Any process that activates or increases the frequency, rate or extent of phosphatidylinositol 3-kinase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of phosphatidylinositol 3-kinase activity|up-regulation of phosphatidylinositol 3-kinase activity|stimulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphoinositide 3-kinase activity|up regulation of phosphatidylinositol 3-kinase activity|activation of phosphatidylinositol 3-kinase activity biological_process owl:Class GO:0050577 biolink:NamedThing GDP-L-fucose synthase activity Catalysis of the reaction: GDP-L-fucose + NAD+ = GDP-4-dehydro-6-deoxy-D-mannose + NADH + H+. tmpzr1t_l9r_go_relaxed.owl GDP-fucose synthetase activity|GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase activity|GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing) Reactome:R-HSA-6787642|RHEA:18885|EC:1.1.1.271|MetaCyc:1.1.1.271-RXN molecular_function owl:Class GO:1902169 biolink:NamedThing cellular response to catechin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catechin stimulus. tmpzr1t_l9r_go_relaxed.owl rjd 2013-05-22T17:35:40Z biological_process owl:Class GO:1902168 biolink:NamedThing response to catechin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catechin stimulus. tmpzr1t_l9r_go_relaxed.owl rjd 2013-05-22T17:35:35Z biological_process owl:Class GO:0032139 biolink:NamedThing dinucleotide insertion or deletion binding Binding to a double-stranded DNA region containing a dinucleotide insertion or deletion. tmpzr1t_l9r_go_relaxed.owl dinucleotide insertion binding molecular_function owl:Class GO:0032135 biolink:NamedThing DNA insertion or deletion binding Binding to a double-stranded DNA region containing an insertion or a deletion. tmpzr1t_l9r_go_relaxed.owl DNA insertion binding|insertion binding molecular_function owl:Class GO:0032805 biolink:NamedThing positive regulation of low-density lipoprotein particle receptor catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein particle receptors. tmpzr1t_l9r_go_relaxed.owl positive regulation of low-density lipoprotein receptor catabolism|positive regulation of low-density lipoprotein receptor catabolic process|stimulation of low-density lipoprotein receptor catabolic process|activation of low-density lipoprotein receptor catabolic process|up regulation of low-density lipoprotein receptor catabolic process|positive regulation of low-density lipoprotein receptor breakdown|positive regulation of low-density lipoprotein receptor degradation|up-regulation of low-density lipoprotein receptor catabolic process|upregulation of low-density lipoprotein receptor catabolic process biological_process owl:Class GO:0044829 biolink:NamedThing positive regulation by host of viral genome replication A process in which a host organism activates or increases the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-06T11:35:07Z biological_process owl:Class GO:0044794 biolink:NamedThing positive regulation by host of viral process A process in which a host organism activates or increases the frequency, rate or extent of the release of a process being mediated by a virus with which it is infected. tmpzr1t_l9r_go_relaxed.owl jl 2013-06-06T11:33:51Z biological_process owl:Class GO:0009209 biolink:NamedThing pyrimidine ribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside triphosphate anabolism|pyrimidine ribonucleoside triphosphate biosynthesis|pyrimidine ribonucleoside triphosphate formation|pyrimidine ribonucleoside triphosphate synthesis biological_process owl:Class GO:0009208 biolink:NamedThing pyrimidine ribonucleoside triphosphate metabolic process The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside triphosphate metabolism biological_process owl:Class GO:0032882 biolink:NamedThing regulation of chitin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chitin. tmpzr1t_l9r_go_relaxed.owl regulation of chitin metabolism biological_process owl:Class GO:0090668 biolink:NamedThing endothelial cell chemotaxis to vascular endothelial growth factor The directed movement of an endothelial cell in response to the presence of vascular endothelial growth factor (VEGF). tmpzr1t_l9r_go_relaxed.owl tb 2015-12-15T11:31:43Z biological_process owl:Class GO:0090667 biolink:NamedThing cell chemotaxis to vascular endothelial growth factor The directed movement of a motile cell in response to the presence of vascular endothelial growth factor (VEGF). tmpzr1t_l9r_go_relaxed.owl tb 2015-12-15T11:27:12Z biological_process owl:Class GO:1900657 biolink:NamedThing positive regulation of diorcinol biosynthetic process Any process that activates or increases the frequency, rate or extent of diorcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of diorcinol anabolism|up-regulation of diorcinol biosynthesis|positive regulation of diorcinol formation|activation of diorcinol synthesis|positive regulation of diorcinol anabolism|positive regulation of diorcinol synthesis|upregulation of diorcinol formation|upregulation of diorcinol synthesis|up regulation of diorcinol synthesis|activation of diorcinol biosynthesis|up-regulation of diorcinol formation|activation of diorcinol biosynthetic process|upregulation of diorcinol biosynthetic process|activation of diorcinol formation|up-regulation of diorcinol anabolism|up regulation of diorcinol formation|up regulation of diorcinol biosynthetic process|up regulation of diorcinol biosynthesis|up-regulation of diorcinol synthesis|upregulation of diorcinol biosynthesis|activation of diorcinol anabolism|up-regulation of diorcinol biosynthetic process|positive regulation of diorcinol biosynthesis|up regulation of diorcinol anabolism di 2012-05-22T04:09:08Z biological_process owl:Class GO:0050831 biolink:NamedThing male-specific defense response to bacterium A set of reactions, specific to males, that are triggered in response to the presence of a bacterium that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl male-specific defence response to bacterium|male-specific defence response to bacteria|male-specific defense response to bacteria|male-specific antibacterial peptide activity biological_process owl:Class GO:0042742 biolink:NamedThing defense response to bacterium Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl defense response to bacteria|defense response to bacterium, incompatible interaction|resistance response to pathogenic bacteria|defence response to bacteria|resistance response to pathogenic bacterium|antibacterial peptide activity|defence response to bacterium GO:0042830|GO:0009816 biological_process owl:Class GO:0051974 biolink:NamedThing negative regulation of telomerase activity Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). tmpzr1t_l9r_go_relaxed.owl downregulation of telomerase activity|down regulation of telomerase activity|down-regulation of telomerase activity|telomerase inhibitor|inhibition of telomerase activity biological_process owl:Class GO:0033373 biolink:NamedThing maintenance of protease location in mast cell secretory granule A process in which a protease is maintained in a secretory granule in a mast cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protease localization in mast cell secretory granule|mast cell protease retention biological_process owl:Class GO:1901668 biolink:NamedThing regulation of superoxide dismutase activity Any process that modulates the frequency, rate or extent of superoxide dismutase activity. tmpzr1t_l9r_go_relaxed.owl regulation of cuprein|regulation of Cu,Zn-SOD|regulation of hepatocuprein|regulation of superoxide dismutase I|regulation of erythrocuprein|regulation of Mn, Fe superoxide dismutase|regulation of Cu-Zn superoxide dismutase activity|regulation of hemocuprein|regulation of superoxide dismutase II|regulation of SOD-1|regulation of manganese superoxide dismutase activity|regulation of nickel superoxide oxidoreductase|regulation of SODS|regulation of Mn-SOD|regulation of SOD-3|regulation of cytocuprein|regulation of nickel superoxide dismutase activity|regulation of copper, zinc superoxide dismutase activity|regulation of SOD-2|regulation of SOD|regulation of ferrisuperoxide dismutase activity|regulation of manganese superoxide oxidoreductase|regulation of zinc superoxide oxidoreductase|regulation of superoxide:superoxide oxidoreductase activity|regulation of Fe-SOD|regulation of iron superoxide oxidoreductase|regulation of iron superoxide dismutase activity|regulation of SOD-4|regulation of SODF tb 2012-11-21T20:46:42Z biological_process owl:Class GO:0032681 biolink:NamedThing regulation of lymphotoxin A production Any process that modulates the frequency, rate, or extent of lymphotoxin A production. tmpzr1t_l9r_go_relaxed.owl regulation of LTA production|regulation of tumor necrosis factor-beta production|regulation of lymphotoxin-alpha production|regulation of TNF-beta production|regulation of lymphotoxin A biosynthetic process GO:0043016 biological_process owl:Class GO:0080067 biolink:NamedThing 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 4-methylthiobutyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 4-methylthiobutyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4329 dhl 2009-04-13T04:05:53Z molecular_function owl:Class GO:0047364 biolink:NamedThing desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + desulfoglucotropeolin = adenosine 3',5'-diphosphate + glucotropeolin + H(+). tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenosine-5'-phosphosulfate:desulfoglucosinolate sulfotransferase activity|PAPS-desulfoglucosinolate sulfotransferase activity|3'-phosphoadenylyl-sulfate:desulfoglucosinolate sulfotransferase activity|desulphoglucosinolate sulphotransferase activity KEGG_REACTION:R03214|MetaCyc:2.8.2.24-RXN|EC:2.8.2.24|RHEA:20281 molecular_function owl:Class GO:0019347 biolink:NamedThing GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-alpha-D-mannosylchitobiosyldiphosphodolichol, a substance composed of mannosylchitobiosyldiphosphodolichol in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-alpha-D-mannosylchitobiosyldiphosphodolichol formation|GDP-alpha-D-mannosylchitobiosyldiphosphodolichol anabolism|GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthesis|GDP-alpha-D-mannosylchitobiosyldiphosphodolichol synthesis MetaCyc:MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS biological_process owl:Class GO:1904073 biolink:NamedThing regulation of trophectodermal cell proliferation Any process that modulates the frequency, rate or extent of trophectodermal cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of trophectoderm cell proliferation tb 2015-03-20T16:55:56Z biological_process owl:Class GO:0051656 biolink:NamedThing establishment of organelle localization The directed movement of an organelle to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of organelle localisation biological_process owl:Class GO:0150012 biolink:NamedThing positive regulation of neuron projection arborization Any process that activates or increases the frequency, rate or extent of the process in which the anatomical structures of a neuron projection are generated and organized into branches. tmpzr1t_l9r_go_relaxed.owl positive regulation of neurite arborization|positive regulation of neuron projection branching|positive regulation of neurite branching bc 2017-12-13T16:46:57Z biological_process owl:Class GO:1901045 biolink:NamedThing negative regulation of oviposition Any process that stops, prevents or reduces the frequency, rate or extent of oviposition. tmpzr1t_l9r_go_relaxed.owl inhibition of egg laying|downregulation of egg-laying|down regulation of egg-laying|down-regulation of egg-laying|inhibition of oviposition|downregulation of egg laying|downregulation of oviposition|negative regulation of egg laying|down regulation of egg laying|down-regulation of egg laying|inhibition of egg-laying|down-regulation of oviposition|down regulation of oviposition|negative regulation of egg-laying kmv 2012-06-27T06:19:58Z biological_process owl:Class GO:1902905 biolink:NamedThing positive regulation of supramolecular fiber organization Any process that activates or increases the frequency, rate or extent of supramolecular fiber organization. tmpzr1t_l9r_go_relaxed.owl upregulation of fibril organisation|activation of fibril organization|up regulation of fibril organisation|up regulation of fibril organization|up-regulation of fibril organisation|positive regulation of fibril organisation|activation of fibril organisation|upregulation of fibril organization|up-regulation of fibril organization HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to negatively regulate fibrillation of alpha-Syn in vitro rl 2014-04-15T16:46:48Z biological_process owl:Class GO:1900642 biolink:NamedThing positive regulation of austinol biosynthetic process Any process that activates or increases the frequency, rate or extent of austinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of austinol anabolism|upregulation of austinol formation|up-regulation of austinol biosynthetic process|upregulation of austinol biosynthetic process|up-regulation of austinol synthesis|activation of austinol biosynthesis|up regulation of austinol biosynthetic process|activation of austinol anabolism|positive regulation of austinol synthesis|positive regulation of austinol anabolism|up-regulation of austinol formation|up regulation of austinol synthesis|upregulation of austinol synthesis|up regulation of austinol biosynthesis|up regulation of austinol anabolism|up-regulation of austinol biosynthesis|upregulation of austinol anabolism|activation of austinol formation|positive regulation of austinol formation|activation of austinol synthesis|positive regulation of austinol biosynthesis|activation of austinol biosynthetic process|upregulation of austinol biosynthesis|up regulation of austinol formation di 2012-05-22T03:58:07Z biological_process owl:Class GO:0010894 biolink:NamedThing negative regulation of steroid biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000833 biolink:NamedThing inositol heptakisphosphate 4-kinase activity Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 4,5-bisdiphosphoinositol-1D-myoinositol (1,2,3,6)tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl diphosphoinositol-pentakisphosphate 4-kinase activity|IP7 4-kinase activity molecular_function owl:Class GO:0000829 biolink:NamedThing inositol heptakisphosphate kinase activity Catalysis of the reaction: ATP + diphospho-1D-myo-inositol-pentakisphosphate = ADP + bis(diphospho)-1D-myo-inositol-tetrakisphosphate. The isomeric configurations of the diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) and bis(diphospho)-1D-myo-inositol-tetrakisphosphate (bis-PP-IP4) are unknown. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855157|Reactome:R-HSA-1855194|Reactome:R-HSA-1855182 molecular_function owl:Class GO:0030834 biolink:NamedThing regulation of actin filament depolymerization Any process that modulates the frequency, rate or extent of the disassembly of actin filaments by the removal of actin monomers from a filament. tmpzr1t_l9r_go_relaxed.owl regulation of actin depolymerization biological_process owl:Class GO:0047854 biolink:NamedThing diguanidinobutanase activity Catalysis of the reaction: 1,4-diguanidinobutane + H(2)O = agmatine + urea. tmpzr1t_l9r_go_relaxed.owl 1,4-diguanidinobutane amidinohydrolase activity RHEA:13597|MetaCyc:DIGUANIDINOBUTANASE-RXN|KEGG_REACTION:R01418|EC:3.5.3.20 molecular_function owl:Class GO:0048300 biolink:NamedThing negative regulation of isotype switching to IgD isotypes Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching to IgD isotypes. tmpzr1t_l9r_go_relaxed.owl downregulation of isotype switching to IgD isotypes|negative regulation of isotype switch recombination to IgD isotypes|negative regulation of class switch recombination to IgD isotypes|down regulation of isotype switching to IgD isotypes|inhibition of isotype switching to IgD isotypes|negative regulation of class switching to IgD isotypes|down-regulation of isotype switching to IgD isotypes biological_process owl:Class GO:0048299 biolink:NamedThing regulation of isotype switching to IgD isotypes Any process that modulates the frequency, rate or extent of isotype switching to IgD isotypes. tmpzr1t_l9r_go_relaxed.owl regulation of isotype switch recombination to IgD isotypes|regulation of class switching to IgD isotypes|regulation of class switch recombination to IgD isotypes biological_process owl:Class GO:0044407 biolink:NamedThing single-species biofilm formation in or on host organism A process in which microorganisms of the same species attach to and grow in or on a host species, and produce extracellular polymers that facilitate attachment and matrix formation, resulting in a change in the microorganisms' growth rate and gene transcription. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044010 biolink:NamedThing single-species biofilm formation A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl bundle-forming pili-dependent aggregation|tfp-dependent aggregation|bundle-forming fimbriae-dependent aggregation|bfp-dependent aggregation|auto-aggregation|type IV pili-dependent aggregation https://github.com/geneontology/go-ontology/issues/18814 GO:0052000 biological_process owl:Class GO:0070862 biolink:NamedThing negative regulation of protein exit from endoplasmic reticulum Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of proteins from the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein exit from endoplasmic reticulum|inhibition of protein exit from endoplasmic reticulum|negative regulation of protein export from ER|downregulation of protein exit from endoplasmic reticulum|down regulation of protein exit from endoplasmic reticulum|negative regulation of protein exit from ER|negative regulation of protein export from endoplasmic reticulum mah 2009-08-17T03:45:56Z biological_process owl:Class GO:0070861 biolink:NamedThing regulation of protein exit from endoplasmic reticulum Any process that modulates the frequency, rate or extent of the directed movement of proteins from the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl regulation of protein export from endoplasmic reticulum|regulation of protein export from ER|regulation of protein exit from ER mah 2009-08-17T03:39:18Z biological_process owl:Class GO:0097076 biolink:NamedThing transforming growth factor beta activated kinase 1 complex A protein complex that possesses protein kinase activity and activates the I-kappa B kinase complex (IKK) and mitogen-activated protein (MAP) kinases in response to TRAF6 signaling. It comprises the catalytic subunit TAK1 complexed to the regulatory subunits, termed TABs (TAK1-binding subunits). tmpzr1t_l9r_go_relaxed.owl TAK1 kinase complex pr 2011-06-15T04:55:32Z cellular_component owl:Class GO:0036367 biolink:NamedThing light adaption The ability of a photoreceptor to adjust to varying levels of light. tmpzr1t_l9r_go_relaxed.owl Light adaptation is usually a combination of cell desensitization and response acceleration. bf 2012-09-26T13:28:14Z biological_process owl:Class GO:0009642 biolink:NamedThing response to light intensity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902635 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis Phosphatidylinositol-4,5-bisphosphate, PtdIns(4,5)P(2) common name. di 2014-01-18T00:34:45Z biological_process owl:Class GO:1902633 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process The chemical reactions and pathways involving 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolism Phosphatidylinositol-4,5-bisphosphate, PtdIns(4,5)P(2) common name. di 2014-01-18T00:34:27Z biological_process owl:Class GO:0047373 biolink:NamedThing acetoxybutynylbithiophene deacetylase activity Catalysis of the reaction: 5-(4-acetoxybut-1-ynyl)-2,2'-bithiophene + H(2)O = 5-(4-hydroxy-but-1-ynyl)-2,2'-bithiophene + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl 5-(4-acetoxybut-1-ynyl)-2,2'-bithiophene O-acetylhydrolase activity|5-(4-acetoxy-1-butynyl)-2,2'-bithiophene:acetate esterase activity|acetoxybutynylbithiophene esterase activity EC:3.1.1.54|KEGG_REACTION:R04490|RHEA:11548|MetaCyc:3.1.1.54-RXN molecular_function owl:Class GO:0019213 biolink:NamedThing deacetylase activity Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5689000 molecular_function owl:Class GO:1900827 biolink:NamedThing positive regulation of membrane depolarization during cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of membrane depolarization during a cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl up regulation of membrane depolarization during cardiac muscle cell action potential|activation of membrane depolarization during cardiac muscle cell action potential|upregulation of membrane depolarization during cardiac muscle cell action potential|up-regulation of membrane depolarization during cardiac muscle cell action potential rl 2012-06-06T04:15:48Z biological_process owl:Class GO:0035395 biolink:NamedThing negative regulation of chemokine (C-X-C motif) ligand 9 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9. tmpzr1t_l9r_go_relaxed.owl negative regulation of MIG production|negative regulation of CXCL9 production bf 2010-03-23T10:06:44Z biological_process owl:Class GO:0014715 biolink:NamedThing myoblast fate commitment in trunk The process taking place in the trunk whereby the developmental fate of a cell becomes restricted such that it will develop into a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042648 biolink:NamedThing chloroplast chromosome A circular DNA molecule containing chloroplast encoded genes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009508 biolink:NamedThing plastid chromosome A circular DNA molecule containing plastid encoded genes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015299 biolink:NamedThing solute:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity|solute:hydrogen antiporter activity Reactome:R-HSA-597628|Reactome:R-HSA-5625574|Reactome:R-HSA-434650 molecular_function owl:Class GO:0002551 biolink:NamedThing mast cell chemotaxis The movement of a mast cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030595 biolink:NamedThing leukocyte chemotaxis The movement of a leukocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl immune cell chemotaxis|leucocyte chemotaxis biological_process owl:Class GO:0036446 biolink:NamedThing myofibroblast differentiation The process in which an undifferentiated cell acquires the features of a myofibroblast cell. tmpzr1t_l9r_go_relaxed.owl myofibroblast cell differentiation bf 2013-10-30T10:06:51Z biological_process owl:Class GO:0045998 biolink:NamedThing positive regulation of ecdysteroid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ecdysteroids. tmpzr1t_l9r_go_relaxed.owl stimulation of ecdysteroid biosynthetic process|activation of ecdysteroid biosynthetic process|upregulation of ecdysteroid biosynthetic process|positive regulation of ecdysteroid biosynthesis|positive regulation of ecdysteroid anabolism|positive regulation of ecdysteroid synthesis|up-regulation of ecdysteroid biosynthetic process|up regulation of ecdysteroid biosynthetic process|positive regulation of ecdysteroid formation biological_process owl:Class GO:0140711 biolink:NamedThing positive regulation of Frizzled Nuclear Import pathway Any process that activates or increases the frequency, rate or extent of a Frizzled Nuclear Import pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of FNI|positive regulation of Frizzled Nuclear Import Wnt Pathway https://github.com/geneontology/go-ontology/issues/21483 pg 2021-09-08T09:17:38Z biological_process owl:Class GO:2000052 biolink:NamedThing positive regulation of non-canonical Wnt signaling pathway Any process that activates or increases the frequency, rate or extent of non-canonical Wnt-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of non-canonical Wnt-activated signaling pathway|positive regulation of non-canonical Wnt receptor signalling pathway|positive regulation of beta-catenin-independent Wnt receptor signaling pathway|positive regulation of non-canonical Wnt receptor signaling pathway jl 2010-08-20T01:04:25Z biological_process owl:Class GO:0140614 biolink:NamedThing 1,8-dihydroxynaphthalene-melanin biosynthetic process The chemical reactions and pathways resulting in the formation of dihydroxy naphthalene (DHN)-melanin. tmpzr1t_l9r_go_relaxed.owl DHN-melanin biosynthesis https://github.com/geneontology/go-ontology/issues/20974 pg 2021-03-04T11:54:05Z biological_process owl:Class GO:0042438 biolink:NamedThing melanin biosynthetic process The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom. tmpzr1t_l9r_go_relaxed.owl melanin formation|melanin anabolism|melanin biosynthesis|melanin synthesis biological_process owl:Class GO:1990008 biolink:NamedThing neurosecretory vesicle A large cytoplasmic membrane-bounded vesicle with an electron dense granular core, up to 150-200 nm in diameter, found in neurosecretory cells in the hypothalamus. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao2031592629 pr 2012-12-12T09:56:14Z cellular_component owl:Class GO:1990005 biolink:NamedThing granular vesicle A cytoplasmic membrane-bounded vesicle of varying size, but usually larger than 45 nm, with an electron dense granular core, found in noradrenergic and peptidergic cells. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao478230652 pr 2012-12-11T14:51:48Z cellular_component owl:Class GO:0060239 biolink:NamedThing positive regulation of signal transduction involved in conjugation with cellular fusion Any process that increases the rate, frequency or extent of the series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060238 biolink:NamedThing regulation of signal transduction involved in conjugation with cellular fusion Any process that modulates the rate, frequency or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, the series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903294 biolink:NamedThing regulation of glutamate secretion, neurotransmission Any process that modulates the frequency, rate or extent of glutamate secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 inferred from mutant phenotype pad 2014-08-13T13:54:15Z biological_process owl:Class GO:2000905 biolink:NamedThing negative regulation of starch metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of starch metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of starch metabolism tb 2011-07-28T11:33:17Z biological_process owl:Class GO:0019388 biolink:NamedThing galactose catabolic process The chemical reactions and pathways resulting in the breakdown of galactose, the aldohexose galacto-hexose. tmpzr1t_l9r_go_relaxed.owl galactose breakdown|galactose degradation|galactose catabolism MetaCyc:GALDEG-PWY biological_process owl:Class GO:0072121 biolink:NamedThing head kidney maturation A developmental process, independent of morphogenetic (shape) change, that is required for the head kidney to attain its fully functional state. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T11:28:08Z biological_process owl:Class GO:0072120 biolink:NamedThing pronephros maturation A developmental process, independent of morphogenetic (shape) change, that is required for the pronephros to attain its fully functional state. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life. tmpzr1t_l9r_go_relaxed.owl pronephric kidney maturation mah 2010-02-22T11:25:48Z biological_process owl:Class GO:0036005 biolink:NamedThing response to macrophage colony-stimulating factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to macrophage colony-stimulating factor stimulus|response to M-CSF bf 2011-09-20T04:22:03Z biological_process owl:Class GO:2000374 biolink:NamedThing regulation of oxygen metabolic process Any process that modulates the frequency, rate or extent of oxygen metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of diatomic oxygen metabolic process|regulation of oxygen metabolism mah 2011-02-11T02:03:32Z biological_process owl:Class GO:0010765 biolink:NamedThing positive regulation of sodium ion transport Any process that increases the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016295 biolink:NamedThing myristoyl-[acyl-carrier-protein] hydrolase activity Catalysis of the reaction: myristoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + myristate. tmpzr1t_l9r_go_relaxed.owl tetradecanoyl-ACP hydrolase activity|myristoyl-[acyl-carrier protein] hydrolase activity|myristoyl-ACP hydrolase activity|tetradecanoyl-[acyl-carrier-protein] hydrolase activity EC:3.1.2.14|KEGG_REACTION:R08159|MetaCyc:RXN-10727|RHEA:30123 molecular_function owl:Class GO:0016297 biolink:NamedThing acyl-[acyl-carrier-protein] hydrolase activity Catalysis of the reaction: acyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + a fatty acid. tmpzr1t_l9r_go_relaxed.owl acyl-ACP-hydrolase activity|acyl-ACP hydrolase activity|acyl-[acyl-carrier protein] hydrolase activity|acyl-ACP thioesterase activity|acyl-acyl carrier protein hydrolase activity|S-acyl fatty acid synthase thioesterase activity|acyl-acyl-carrier-protein hydrolase activity MetaCyc:RXN-7902|Reactome:R-HSA-5655955|EC:3.1.2.14|RHEA:30131 GO:0010281 molecular_function owl:Class GO:0061957 biolink:NamedThing NVT complex A protein complex that is capable of contributing to protein localization by the NVT pathway. In fission yeast, the Nvt complex consists of Ape2, Lap2 and Nbr1. tmpzr1t_l9r_go_relaxed.owl dph 2017-12-01T17:01:17Z cellular_component owl:Class GO:2001195 biolink:NamedThing negative regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine Any process that stops, prevents or reduces the frequency, rate or extent of lysine biosynthetic process via alpha-aminoadipate and saccharopine. tmpzr1t_l9r_go_relaxed.owl negative regulation of lysine biosynthetic process via aminoadipic acid and saccharopine|negative regulation of lysine biosynthesis via aminoadipic acid and saccharopine mcc 2011-11-03T07:57:18Z biological_process owl:Class GO:0120106 biolink:NamedThing mitotic actomyosin contractile ring, distal actin filament layer The region of the mitotic actomyosin ring containing actin filaments and cross linkers, myosin motors, and connections to the plasma membrane through the intermediate layer. It is further from the plasma membrane than the intermediate layer which it is adjacent to. tmpzr1t_l9r_go_relaxed.owl actomyosin contractile ring, distal actin filament layer krc 2017-10-11T22:56:44Z cellular_component owl:Class GO:0042455 biolink:NamedThing ribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl ribonucleoside formation|ribonucleoside anabolism|ribonucleoside synthesis|ribonucleoside biosynthesis biological_process owl:Class GO:0009119 biolink:NamedThing ribonucleoside metabolic process The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl ribonucleoside metabolism biological_process owl:Class GO:0097077 biolink:NamedThing copper ion sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+). tmpzr1t_l9r_go_relaxed.owl pr 2011-06-17T09:57:11Z molecular_function owl:Class GO:0140215 biolink:NamedThing regulation of D-aspartate import across plasma membrane Any process that modulates the frequency, rate or extent of the directed import of D-aspartate from the extracellular region across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15041 pg 2018-04-11T15:33:35Z biological_process owl:Class GO:1901777 biolink:NamedThing mitomycin C biosynthetic process The chemical reactions and pathways resulting in the formation of mitomycin C. tmpzr1t_l9r_go_relaxed.owl mitomycin C anabolism|mitomycin C formation|mitomycin C synthesis|mitomycin C biosynthesis yaf 2013-01-15T12:11:57Z biological_process owl:Class GO:0017150 biolink:NamedThing tRNA dihydrouridine synthase activity Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6782296|MetaCyc:RXN0-1281|RHEA:23624 molecular_function owl:Class GO:1905139 biolink:NamedThing apical ectodermal ridge formation The process that gives rise to the apical ectodermal ridge. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl crista ectodermalis apicalis formation|apical epidermal ridge formation|AER formation dph 2016-04-13T11:46:40Z biological_process owl:Class GO:0006547 biolink:NamedThing histidine metabolic process The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine metabolism Wikipedia:Histidine biological_process owl:Class GO:1901671 biolink:NamedThing positive regulation of superoxide dismutase activity Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytocuprein|up regulation of superoxide dismutase activity|positive regulation of erythrocuprein|up-regulation of superoxide:superoxide oxidoreductase activity|positive regulation of Fe-SOD|activation of SOD-2|up regulation of Cu-Zn superoxide dismutase activity|up regulation of cuprein|positive regulation of SOD-1|upregulation of SOD|activation of SODS|up-regulation of nickel superoxide oxidoreductase|up regulation of superoxide dismutase I|positive regulation of SODF|up regulation of SOD-4|upregulation of iron superoxide oxidoreductase|positive regulation of hepatocuprein|upregulation of superoxide dismutase activity|up regulation of erythrocuprein|positive regulation of SODS|up regulation of Mn-SOD|up-regulation of manganese superoxide dismutase activity|up-regulation of superoxide dismutase II|upregulation of SOD-1|positive regulation of SOD-2|up-regulation of hepatocuprein|up regulation of hepatocuprein|upregulation of SODF|upregulation of hepatocuprein|positive regulation of Mn-SOD|positive regulation of iron superoxide oxidoreductase|activation of cuprein|up-regulation of SOD-2|upregulation of SODS|activation of SODF|activation of superoxide dismutase II|up regulation of manganese superoxide dismutase activity|upregulation of nickel superoxide dismutase activity|up regulation of superoxide dismutase II|up-regulation of SOD-4|positive regulation of nickel superoxide oxidoreductase|up regulation of nickel superoxide dismutase activity|activation of SOD-3|up regulation of Mn, Fe superoxide dismutase|up-regulation of cytocuprein|activation of superoxide dismutase activity|positive regulation of Cu,Zn-SOD|up-regulation of superoxide dismutase I|up regulation of zinc superoxide oxidoreductase|activation of erythrocuprein|positive regulation of cuprein|upregulation of superoxide:superoxide oxidoreductase activity|upregulation of Cu,Zn-SOD|activation of SOD|upregulation of zinc superoxide oxidoreductase|up-regulation of iron superoxide dismutase activity|up-regulation of zinc superoxide oxidoreductase|activation of superoxide:superoxide oxidoreductase activity|upregulation of Cu-Zn superoxide dismutase activity|up-regulation of hemocuprein|positive regulation of superoxide dismutase I|activation of SOD-1|activation of superoxide dismutase I|activation of hepatocuprein|up regulation of SOD-1|up regulation of manganese superoxide oxidoreductase|positive regulation of Cu-Zn superoxide dismutase activity|positive regulation of Mn, Fe superoxide dismutase|activation of nickel superoxide oxidoreductase|up-regulation of erythrocuprein|up regulation of hemocuprein|upregulation of ferrisuperoxide dismutase activity|upregulation of cytocuprein|up-regulation of SOD-3|up-regulation of Cu-Zn superoxide dismutase activity|up-regulation of nickel superoxide dismutase activity|up regulation of SODF|upregulation of Fe-SOD|upregulation of nickel superoxide oxidoreductase|upregulation of Mn, Fe superoxide dismutase|upregulation of SOD-3|up-regulation of SOD-1|positive regulation of SOD|up-regulation of Fe-SOD|up regulation of superoxide:superoxide oxidoreductase activity|positive regulation of iron superoxide dismutase activity|activation of Cu,Zn-SOD|up regulation of cytocuprein|upregulation of copper, zinc superoxide dismutase activity|activation of manganese superoxide dismutase activity|up regulation of Cu,Zn-SOD|activation of zinc superoxide oxidoreductase|up-regulation of manganese superoxide oxidoreductase|up regulation of SOD-2|upregulation of cuprein|upregulation of erythrocuprein|positive regulation of manganese superoxide dismutase activity|up regulation of SOD-3|up-regulation of copper, zinc superoxide dismutase activity|up-regulation of SODF|up-regulation of SOD|positive regulation of superoxide:superoxide oxidoreductase activity|activation of hemocuprein|activation of iron superoxide oxidoreductase|upregulation of superoxide dismutase II|positive regulation of hemocuprein|positive regulation of nickel superoxide dismutase activity|up regulation of SODS|up regulation of ferrisuperoxide dismutase activity|upregulation of Mn-SOD|up-regulation of iron superoxide oxidoreductase|up regulation of copper, zinc superoxide dismutase activity|upregulation of manganese superoxide dismutase activity|up-regulation of Mn, Fe superoxide dismutase|upregulation of iron superoxide dismutase activity|positive regulation of manganese superoxide oxidoreductase|activation of Fe-SOD|up-regulation of superoxide dismutase activity|activation of ferrisuperoxide dismutase activity|up regulation of iron superoxide dismutase activity|activation of manganese superoxide oxidoreductase|activation of SOD-4|up-regulation of SODS|activation of Cu-Zn superoxide dismutase activity|positive regulation of SOD-4|positive regulation of copper, zinc superoxide dismutase activity|activation of nickel superoxide dismutase activity|up-regulation of cuprein|positive regulation of zinc superoxide oxidoreductase|up regulation of SOD|upregulation of SOD-4|up-regulation of ferrisuperoxide dismutase activity|activation of Mn, Fe superoxide dismutase|upregulation of SOD-2|activation of Mn-SOD|up-regulation of Mn-SOD|positive regulation of superoxide dismutase II|up regulation of iron superoxide oxidoreductase|activation of iron superoxide dismutase activity|up regulation of nickel superoxide oxidoreductase|activation of copper, zinc superoxide dismutase activity|activation of cytocuprein|positive regulation of SOD-3|upregulation of manganese superoxide oxidoreductase|upregulation of hemocuprein|up-regulation of Cu,Zn-SOD|positive regulation of ferrisuperoxide dismutase activity|upregulation of superoxide dismutase I|up regulation of Fe-SOD tb 2012-11-21T21:36:11Z biological_process owl:Class GO:0050470 biolink:NamedThing trimethylamine dehydrogenase activity Catalysis of the reaction: trimethylamine + H2O + electron-transferring flavoprotein = dimethylamine + formaldehyde + reduced electron-transferring flavoprotein. tmpzr1t_l9r_go_relaxed.owl trimethylamine:electron-transferring flavoprotein oxidoreductase (demethylating)|TMADh activity UM-BBD_enzymeID:e0854|EC:1.5.8.2|MetaCyc:1.5.8.2-RXN|RHEA:11864 molecular_function owl:Class GO:1903141 biolink:NamedThing negative regulation of establishment of endothelial barrier Any process that stops, prevents or reduces the frequency, rate or extent of establishment of endothelial barrier. tmpzr1t_l9r_go_relaxed.owl down-regulation of establishment of endothelial barrier|inhibition of establishment of endothelial barrier|down regulation of establishment of endothelial barrier|downregulation of establishment of endothelial barrier als 2014-07-01T12:12:40Z biological_process owl:Class GO:0045500 biolink:NamedThing sevenless signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to sevenless (sev; a receptor tyrosine kinase) on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl sev receptor signaling pathway|sev signaling pathway|sevenless signalling pathway biological_process owl:Class GO:0050003 biolink:NamedThing deoxycytidylate C-methyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dCMP = 2'-deoxy-5-methyl-5'-cytidylate + 7,8-dihydrofolate. tmpzr1t_l9r_go_relaxed.owl deoxycytidylate methyltransferase activity|dCMP methyltransferase activity|5,10-methylenetetrahydrofolate:dCMP C-methyltransferase activity EC:2.1.1.54|RHEA:11568|MetaCyc:DEOXYCYTIDYLATE-C-METHYLTRANSFERASE-RXN|KEGG_REACTION:R01670 molecular_function owl:Class GO:0106210 biolink:NamedThing culmorin biosynthetic process The chemical reactions and pathways resulting in the formation of culmorin, a sesquiterpenoid fungal metabolite and mycotoxin produced by some ascomycete species such as Fusarium culmorum, F. graminearum, F. venenatum and Leptosphaeria oraemaris. tmpzr1t_l9r_go_relaxed.owl culmorin anabolism|culmorin biosynthesis|culmorin formation|culmorin synthesis hjd 2019-05-13T17:30:41Z biological_process owl:Class GO:0047201 biolink:NamedThing beta-glucogallin O-galloyltransferase activity Catalysis of the reaction: 2 1-O-galloyl-beta-D-glucose = 1,6-bis-O-galloyl-beta-D-glucose + D-glucose. tmpzr1t_l9r_go_relaxed.owl 1-O-galloyl-beta-D-glucose:1-O-galloyl-beta-D-glucose O-galloyltransferase activity RHEA:11416|MetaCyc:2.3.1.90-RXN|EC:2.3.1.90|KEGG_REACTION:R00049 molecular_function owl:Class GO:2001137 biolink:NamedThing positive regulation of endocytic recycling Any process that activates or increases the frequency, rate or extent of endocytic recycling. tmpzr1t_l9r_go_relaxed.owl positive regulation of retrograde transport of endocytic vesicles kmv 2011-10-14T03:34:49Z biological_process owl:Class GO:2000219 biolink:NamedThing positive regulation of invasive growth in response to glucose limitation Any process that activates or increases the frequency, rate or extent of invasive growth in response to glucose limitation. tmpzr1t_l9r_go_relaxed.owl positive regulation of colony morphology mah 2010-11-03T04:36:02Z biological_process owl:Class GO:0050803 biolink:NamedThing regulation of synapse structure or activity Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015896 biolink:NamedThing nalidixic acid transport The directed movement of nalidixic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nalidixic acid is a synthetic antibiotic that interferes with DNA gyrase and inhibits prokaryotic replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061738 biolink:NamedThing late endosomal microautophagy The autophagy process by which cytosolic proteins targeted for degradation are tagged with a chaperone and are directly transferred into and degraded in a late endosomal compartment. tmpzr1t_l9r_go_relaxed.owl dph 2015-09-24T14:40:02Z biological_process owl:Class GO:0047833 biolink:NamedThing D-sorbitol dehydrogenase (acceptor) activity Catalysis of the reaction: D-sorbitol + acceptor = L-sorbose + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-sorbitol dehydrogenase activity|D-sorbitol:(acceptor) 1-oxidoreductase activity|D-sorbitol:acceptor 1-oxidoreductase activity RHEA:21320|MetaCyc:D-SORBITOL-DEHYDROGENASE-RXN|EC:1.1.99.21 molecular_function owl:Class GO:0062090 biolink:NamedThing positive regulation of taurine biosynthetic process Any process that activates or increases the frequency, rate or extent of taurine biosynthesis. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-07T14:10:58Z biological_process owl:Class GO:0048671 biolink:NamedThing negative regulation of collateral sprouting Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting. tmpzr1t_l9r_go_relaxed.owl downregulation of collateral sprouting|inhibition of collateral sprouting|down regulation of collateral sprouting|down-regulation of collateral sprouting biological_process owl:Class GO:0030308 biolink:NamedThing negative regulation of cell growth Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth. tmpzr1t_l9r_go_relaxed.owl downregulation of cell growth|down-regulation of cell growth|inhibition of cell growth|down regulation of cell growth biological_process owl:Class GO:0098713 biolink:NamedThing leucine import across plasma membrane The directed movement of leucine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-leucine import into cell|leucine import into cell mah 2013-06-12T12:27:47Z GO:1990122 biological_process owl:Class GO:0089718 biolink:NamedThing amino acid import across plasma membrane The directed movement of an amino acid from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl amino acid transmembrane import|amino acid import into cell|L-amino acid import|L-amino acid uptake jl 2012-11-14T14:21:41Z GO:0043092|GO:1902837|GO:0044745 biological_process owl:Class GO:0070171 biolink:NamedThing negative regulation of tooth mineralization Any process that stops, prevents, or reduces the frequency, rate or extent of tooth mineralization, the deposition of calcium salts in tooth structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070168 biolink:NamedThing negative regulation of biomineral tissue development Any process that stops, prevents, or reduces the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008070 biolink:NamedThing maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded Polarization of the ovarian follicle cells along the dorsal-ventral axis by a gene product encoded by cells of the germ line. tmpzr1t_l9r_go_relaxed.owl maternal determination of dorsal-ventral axis, ovarian follicular epithelium, germ-line encoded|maternal determination of dorsoventral axis, ovarian follicular epithelium, germ-line encoded biological_process owl:Class GO:1905933 biolink:NamedThing regulation of cell fate determination Any process that modulates the frequency, rate or extent of cell fate determination. tmpzr1t_l9r_go_relaxed.owl bhm 2017-02-09T11:25:21Z biological_process owl:Class GO:0110023 biolink:NamedThing negative regulation of cardiac muscle myoblast proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-29T15:18:30Z biological_process owl:Class GO:0110022 biolink:NamedThing regulation of cardiac muscle myoblast proliferation Any process that modulates the frequency, rate or extent of cardiac muscle myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-29T15:11:47Z biological_process owl:Class GO:0010375 biolink:NamedThing stomatal complex patterning The regionalization process of establishing the non-random spatial arrangement of stomatal complex on the surface of a leaf. The stomatal complex is the stomatal guard cells and their associated epidermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019741 biolink:NamedThing pentacyclic triterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. tmpzr1t_l9r_go_relaxed.owl pentacyclic triterpenoid degradation|pentacyclic triterpenoid breakdown|pentacyclic triterpenoid catabolism biological_process owl:Class GO:0051308 biolink:NamedThing male meiosis chromosome separation The process in which paired chromosomes are physically detached from each other during male meiosis. tmpzr1t_l9r_go_relaxed.owl male meiosis chromosome resolution|chromosome separation during male meiosis biological_process owl:Class GO:0062081 biolink:NamedThing activating MHC class Ib receptor activity Combining with a MHC class Ib protein complex to mediate signaling that activates a lymphocyte. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-15T15:05:07Z molecular_function owl:Class GO:0032394 biolink:NamedThing MHC class Ib receptor activity Combining with an MHC class Ib protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families. tmpzr1t_l9r_go_relaxed.owl T cell receptor activity|alpha-beta T cell receptor activity|gamma-delta T cell receptor activity Note that this term is intended for annotation of gene products that act as receptors for MHC class Ib protein complexes, not for components of the MHC class Ib protein complexes themselves. molecular_function owl:Class GO:0103101 biolink:NamedThing UDP-glucose:7-methylthioheptylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 7-methylthioheptylhydroximate <=> H+ + 6-methylthiohexyldesulfoglucosinolate + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.195|MetaCyc:RXNQT-4326 molecular_function owl:Class GO:0086075 biolink:NamedThing gap junction channel activity involved in cardiac conduction electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from one cardiomyocyte to an adjacent cardiomyocyte. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:08:29Z molecular_function owl:Class GO:0005243 biolink:NamedThing gap junction channel activity A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes. tmpzr1t_l9r_go_relaxed.owl intercellular channel|connexin|innexin channel activity|innexin Reactome:R-HSA-375340|Reactome:R-HSA-375342|Reactome:R-HSA-375330|Reactome:R-HSA-375339|Reactome:R-HSA-190681 GO:0015286|GO:0015285 molecular_function owl:Class GO:0043496 biolink:NamedThing regulation of protein homodimerization activity Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. tmpzr1t_l9r_go_relaxed.owl Note that protein homodimerization is a molecular function: 'protein homodimerization activity ; GO:0042803'. biological_process owl:Class GO:2000231 biolink:NamedThing positive regulation of pancreatic stellate cell proliferation Any process that activates or increases the frequency, rate or extent of pancreatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-09T03:45:23Z biological_process owl:Class GO:0048146 biolink:NamedThing positive regulation of fibroblast proliferation Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells. tmpzr1t_l9r_go_relaxed.owl up-regulation of fibroblast proliferation|up regulation of fibroblast proliferation|stimulation of fibroblast proliferation|upregulation of fibroblast proliferation|activation of fibroblast proliferation biological_process owl:Class GO:1901919 biolink:NamedThing positive regulation of exoribonuclease activity Any process that activates or increases the frequency, rate or extent of exoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of exoribonuclease activity|activation of exoribonuclease activity|upregulation of exoribonuclease activity|up regulation of exoribonuclease activity rb 2013-02-15T00:58:07Z biological_process owl:Class GO:1901917 biolink:NamedThing regulation of exoribonuclease activity Any process that modulates the frequency, rate or extent of exoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl rb 2013-02-15T00:57:56Z biological_process owl:Class GO:0004967 biolink:NamedThing glucagon receptor activity Combining with glucagon and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032778 biolink:NamedThing P-type cobalt transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cobalt(out) = ADP + phosphate + cobalt(in). tmpzr1t_l9r_go_relaxed.owl cobalt transporting ATPase activity|ATP-dependent cobalt transmembrane transporter activity|cobalt porter activity|ATPase-coupled cobalt transmembrane transporter activity|cobalt-transporting ATPase activity RHEA:32779 GO:0015632 molecular_function owl:Class GO:0015087 biolink:NamedThing cobalt ion transmembrane transporter activity Enables the transfer of cobalt (Co) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity|cobalt, zinc uptake permease activity RHEA:28578 molecular_function owl:Class GO:0009114 biolink:NamedThing hypoxanthine catabolic process The chemical reactions and pathways resulting in the breakdown of hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate. tmpzr1t_l9r_go_relaxed.owl hypoxanthine catabolism|hypoxanthine breakdown|hypoxanthine degradation|hypoxanthine oxidation GO:0006150 biological_process owl:Class GO:0006145 biolink:NamedThing purine nucleobase catabolic process The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. tmpzr1t_l9r_go_relaxed.owl purine base breakdown|purine base catabolism|purine base catabolic process|purine base degradation biological_process owl:Class GO:0021848 biolink:NamedThing neuroblast division in subpallium The division of neuroblasts in the subpallium area of the forebrain. The interneuron precursors that these cells give rise to include GABAergic interneurons and will migrate tangentially. tmpzr1t_l9r_go_relaxed.owl neuroblast division in the ventral telencephalon biological_process owl:Class GO:0055057 biolink:NamedThing neuroblast division The process resulting in the physical partitioning and separation of a neuroblast into daughter cells. A neuroblast is any cell that will divide and give rise to a neuron. tmpzr1t_l9r_go_relaxed.owl neuroblast cell division biological_process owl:Class GO:0002596 biolink:NamedThing negative regulation of antigen processing and presentation of peptide antigen via MHC class Ib Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl negative regulation of peptide antigen processing and presentation via MHC class Ib|down regulation of antigen processing and presentation of peptide antigen via MHC class Ib|downregulation of antigen processing and presentation of peptide antigen via MHC class Ib|down-regulation of antigen processing and presentation of peptide antigen via MHC class Ib|inhibition of antigen processing and presentation of peptide antigen via MHC class Ib biological_process owl:Class GO:0002595 biolink:NamedThing regulation of antigen processing and presentation of peptide antigen via MHC class Ib Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl regulation of peptide antigen processing and presentation via MHC class Ib biological_process owl:Class GO:1903741 biolink:NamedThing negative regulation of phosphatidate phosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidate phosphatase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of phosphatidic acid phosphatase activity|down-regulation of phosphatidic acid phosphatase activity|downregulation of phosphatic acid phosphatase activity|negative regulation of phosphatidate phosphohydrolase activity|negative regulation of acid phosphatidyl phosphatase activity|down-regulation of phosphatidate phosphatase activity|down regulation of phosphatidate phosphohydrolase activity|downregulation of phosphatidate phosphohydrolase activity|down regulation of phosphatidic acid phosphatase activity|down regulation of 3-sn-phosphatidate phosphohydrolase activity|down regulation of acid phosphatidyl phosphatase activity|inhibition of acid phosphatidyl phosphatase activity|inhibition of phosphatic acid phosphatase activity|downregulation of phosphatic acid phosphohydrolase activity|down-regulation of acid phosphatidyl phosphatase activity|downregulation of acid phosphatidyl phosphatase activity|inhibition of 3-sn-phosphatidate phosphohydrolase activity|inhibition of phosphatic acid phosphohydrolase activity|negative regulation of 3-sn-phosphatidate phosphohydrolase activity|negative regulation of phosphatic acid phosphohydrolase activity|down-regulation of phosphatidate phosphohydrolase activity|downregulation of phosphatidic acid phosphatase activity|downregulation of phosphatidate phosphatase activity|down regulation of phosphatic acid phosphohydrolase activity|inhibition of phosphatidate phosphatase activity|down-regulation of phosphatic acid phosphatase activity|down regulation of phosphatic acid phosphatase activity|inhibition of phosphatidate phosphohydrolase activity|down regulation of phosphatidate phosphatase activity|downregulation of 3-sn-phosphatidate phosphohydrolase activity|negative regulation of phosphatidic acid phosphatase activity|negative regulation of phosphatic acid phosphatase activity|down-regulation of phosphatic acid phosphohydrolase activity|down-regulation of 3-sn-phosphatidate phosphohydrolase activity tb 2014-12-11T23:37:54Z biological_process owl:Class GO:1900838 biolink:NamedThing negative regulation of fumigaclavine C biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of fumigaclavine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of fumigaclavine C biosynthetic process di 2012-06-07T09:36:45Z biological_process owl:Class GO:1900823 biolink:NamedThing negative regulation of ergot alkaloid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ergot alkaloid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of ergot alkaloid anabolism|inhibition of ergot alkaloid formation|inhibition of ergot alkaloid synthesis|down regulation of ergot alkaloid biosynthesis|downregulation of ergot alkaloid biosynthesis|down-regulation of ergot alkaloid anabolism|downregulation of ergot alkaloid biosynthetic process|downregulation of ergot alkaloid formation|down-regulation of ergot alkaloid biosynthesis|down regulation of ergot alkaloid anabolism|negative regulation of ergot alkaloid biosynthesis|down-regulation of ergot alkaloid formation|down regulation of ergot alkaloid biosynthetic process|down-regulation of ergot alkaloid biosynthetic process|inhibition of ergot alkaloid biosynthesis|negative regulation of ergot alkaloid formation|negative regulation of ergot alkaloid synthesis|downregulation of ergot alkaloid synthesis|negative regulation of ergot alkaloid anabolism|down regulation of ergot alkaloid synthesis|down regulation of ergot alkaloid formation|downregulation of ergot alkaloid anabolism|inhibition of ergot alkaloid biosynthetic process|down-regulation of ergot alkaloid synthesis di 2012-06-04T11:12:54Z biological_process owl:Class GO:0034191 biolink:NamedThing apolipoprotein A-I receptor binding Binding to an apolipoprotein A-I receptor. tmpzr1t_l9r_go_relaxed.owl Note that this term is to be used only to annotate gene products that bind to lipid-free APOA1. For receptors that bind lipid-associated apolipoproteins (plasma lipoprotein particles), consider annotating to 'lipoprotein receptor activity ; GO:0030228' or its child terms. molecular_function owl:Class GO:0034190 biolink:NamedThing apolipoprotein receptor binding Binding to an apolipoprotein receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000393 biolink:NamedThing spliceosomal conformational changes to generate catalytic conformation Structural rearrangements of the spliceosome complex, containing RNA to be spliced, to generate a catalytic conformation. tmpzr1t_l9r_go_relaxed.owl 3'-splice site cleavage, exon ligation biological_process owl:Class GO:0034865 biolink:NamedThing 2,4,4-trimethylpentanoate-CoA ligase activity Catalysis of the reaction: 2,4,4-trimethylpentanoate + CoASH = 2,4,4-trimethylpentanoyl-CoA + OH-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1271 molecular_function owl:Class GO:0033032 biolink:NamedThing regulation of myeloid cell apoptotic process Any process that modulates the frequency, rate, or extent of myeloid cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of myeloid cell apoptosis biological_process owl:Class GO:0050276 biolink:NamedThing scyllo-inosamine 4-kinase activity Catalysis of the reaction: 1-amino-1-deoxy-scyllo-inositol + ATP = 1-amino-1-deoxy-scyllo-inositol 4-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:inosamine phosphotransferase activity|ATP:1-amino-1-deoxy-scyllo-inositol 4-phosphotransferase activity|scyllo-inosamine kinase (phosphorylating)|scyllo-inosamine kinase activity KEGG_REACTION:R03384|EC:2.7.1.65|RHEA:18605|MetaCyc:SCYLLO-INOSAMINE-KINASE-RXN molecular_function owl:Class GO:0099118 biolink:NamedThing microtubule-based protein transport A microtubule-based process that results in the transport of proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044255 biolink:NamedThing cellular lipid metabolic process The chemical reactions and pathways involving lipids, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular lipid metabolism biological_process owl:Class GO:0046002 biolink:NamedThing positive regulation of preblastoderm mitotic cell cycle Any process that activates or increases the rate or extent of progression through the preblastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl upregulation of progression through preblastoderm mitotic cell cycle|positive regulation of preblastoderm mitotic cell cycle progression|activation of progression through preblastoderm mitotic cell cycle|up regulation of progression through preblastoderm mitotic cell cycle|up-regulation of progression through preblastoderm mitotic cell cycle|positive regulation of progression through preblastoderm mitotic cell cycle|stimulation of progression through preblastoderm mitotic cell cycle biological_process owl:Class GO:0007347 biolink:NamedThing regulation of preblastoderm mitotic cell cycle A cell cycle process that modulates the rate or extent of the progression through the preblastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl preblastoderm mitotic cell cycle regulation|preblastoderm mitotic cell cycle modulation|modulation of preblastoderm mitotic cell cycle progression|regulation of preblastoderm mitotic cell cycle progression|regulation of progression through preblastoderm mitotic cell cycle|preblastoderm mitotic cell cycle regulator biological_process owl:Class GO:0062188 biolink:NamedThing anandamide 11,12 epoxidase activity Catalysis of the reaction: N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + O2 + reduced [NADPH--hemoprotein reductase] = H(+) + H2O + N-(11,12-epoxy-5Z,8Z,14Z-eicosatrienoyl)-ethanolamine + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:53144 dph 2019-11-26T18:53:52Z molecular_function owl:Class GO:0062186 biolink:NamedThing anandamide epoxidase activity Catalysis of the epoxidation of double bonds of the arachidonoyl moiety of anandamide. tmpzr1t_l9r_go_relaxed.owl arachidonoylethanolamide epoxidase activity dph 2019-11-26T18:49:50Z molecular_function owl:Class GO:1902948 biolink:NamedThing negative regulation of tau-protein kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of tau-protein kinase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of tau-protein kinase I activity|inhibition of tau protein kinase activity|down-regulation of TPK I|down regulation of TPK I|negative regulation of TPK|down-regulation of tau kinase activity|inhibition of TPK|negative regulation of TTK|downregulation of tau-protein kinase II activity|down-regulation of tau-protein kinase activity|inhibition of TPK I|negative regulation of TPK I|inhibition of tau-protein kinase activity|inhibition of tau-protein kinase II activity|negative regulation of CDK5/p23|downregulation of tau protein kinase activity|downregulation of tau-protein kinase I activity|down regulation of tau-protein kinase I activity|inhibition of TPK II|negative regulation of protein tau kinase activity|negative regulation of cdk5/p20|negative regulation of tau-protein kinase I activity|downregulation of [Tau protein] kinase activity|negative regulation of STK31|negative regulation of GSK|negative regulation of TPK II|inhibition of brain protein kinase PK40erk activity|down-regulation of tau-protein kinase II activity|down-regulation of cdk5/p20|inhibition of cdk5/p20|inhibition of tau kinase activity|negative regulation of tau kinase activity|down regulation of tau-tubulin kinase activity|down regulation of tau-protein kinase II activity|down regulation of brain protein kinase PK40erk activity|inhibition of STK31|negative regulation of tau-protein kinase II activity|inhibition of protein tau kinase activity|downregulation of CDK5/p23|inhibition of [Tau protein] kinase activity|down regulation of tau-protein kinase activity|downregulation of tau kinase activity|down-regulation of [Tau protein] kinase activity|negative regulation of tau-tubulin kinase activity|downregulation of cdk5/p20|down regulation of TTK|negative regulation of [Tau protein] kinase activity|inhibition of CDK5/p23|downregulation of TPK|down-regulation of TPK|down-regulation of TTK|downregulation of tau-tubulin kinase activity|down-regulation of GSK|down-regulation of brain protein kinase PK40erk activity|down regulation of tau protein kinase activity|down regulation of CDK5/p23|down regulation of glycogen synthase kinase-3beta activity|negative regulation of tau protein kinase activity|inhibition of glycogen synthase kinase-3beta activity|down regulation of [Tau protein] kinase activity|downregulation of brain protein kinase PK40erk activity|inhibition of TTK|downregulation of TPK II|down-regulation of tau-tubulin kinase activity|down-regulation of glycogen synthase kinase-3beta activity|down regulation of TPK II|downregulation of protein tau kinase activity|down-regulation of tau protein kinase activity|down-regulation of protein tau kinase activity|downregulation of STK31|down-regulation of STK31|down regulation of cdk5/p20|downregulation of GSK|down regulation of TPK|downregulation of tau-protein kinase activity|downregulation of TTK|down regulation of GSK|down-regulation of tau-protein kinase I activity|inhibition of GSK|down-regulation of TPK II|negative regulation of glycogen synthase kinase-3beta activity|downregulation of glycogen synthase kinase-3beta activity|down-regulation of CDK5/p23|down regulation of protein tau kinase activity|inhibition of tau-tubulin kinase activity|down regulation of tau kinase activity|negative regulation of brain protein kinase PK40erk activity|downregulation of TPK I|down regulation of STK31 sjp 2014-05-02T08:43:32Z biological_process owl:Class GO:0006469 biolink:NamedThing negative regulation of protein kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of protein kinase activity|down regulation of protein kinase activity|down-regulation of protein kinase activity|inhibition of protein kinase activity biological_process owl:Class GO:0070150 biolink:NamedThing mitochondrial glycyl-tRNA aminoacylation The process of coupling glycine to glycyl-tRNA in a mitochondrion, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047298 biolink:NamedThing (S)-3-amino-2-methylpropionate transaminase activity Catalysis of the reaction: (S)-3-amino-2-methylpropanoate + 2-oxoglutarate = 2-methyl-3-oxopropanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl (S)-3-amino-2-methylpropanoate:2-oxoglutarate aminotransferase activity|beta-aminoisobutyrate-alpha-ketoglutarate transaminase activity|(S)-3-amino-2-methylpropionate aminotransferase activity|L-3-aminoisobutyric aminotransferase activity|L-3-aminoisobutyrate transaminase activity|L-3-aminoisobutyrate aminotransferase activity|L-AIBAT activity|beta-aminobutyric transaminase activity MetaCyc:2.6.1.22-RXN|EC:2.6.1.22|KEGG_REACTION:R04188|RHEA:13993 molecular_function owl:Class GO:0015446 biolink:NamedThing ATPase-coupled arsenite transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + arsenite(in) = ADP + phosphate + arsenite(out). tmpzr1t_l9r_go_relaxed.owl arsenical resistance ATPase activity|arsenite ABC transporter|arsenite-transmembrane transporting ATPase activity|arsenite-translocating ATPase activity|arsenical resistance efflux pump|arsenical pump-driving ATPase activity|arsenite-transporting ATPase activity|arsenite transporting ATPase activity TC:3.A.4.1.1|EC:7.3.2.7|MetaCyc:3.6.3.16-RXN|RHEA:11348 EC:7.3.2.7 states that this bacterial transporter does not belong to the ABC superfamily, and instead is a member of its own family, referred to as the Ars family. Like ABC transporters, it contains two nucleotide binding sites (PMID:10970874). molecular_function owl:Class GO:0022853 biolink:NamedThing active ion transmembrane transporter activity Enables the transfer of an ion from one side of a membrane to the other up the solute's concentration gradient. This is carried out by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072504 biolink:NamedThing cellular trivalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of trivalent cations at the level of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'cellular di-, tri-valent inorganic cation homeostasis ; GO:0030005' (sibling term 'cellular divalent inorganic cation homeostasis' ; GO:0072503'). mah 2010-12-16T01:26:43Z biological_process owl:Class GO:0030003 biolink:NamedThing cellular cation homeostasis Any process involved in the maintenance of an internal steady state of cations at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032785 biolink:NamedThing negative regulation of DNA-templated transcription, elongation Any process that stops, prevents, or reduces the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcriptional elongation|negative regulation of DNA-dependent transcription, elongation|negative regulation of transcription elongation|negative transcription elongation regulator activity|down-regulation of RNA elongation|downregulation of RNA elongation|negative regulation of transcription elongation, DNA-dependent|down regulation of RNA elongation|inhibition of RNA elongation biological_process owl:Class GO:0000782 biolink:NamedThing telomere cap complex A complex of DNA and protein located at the end of a linear chromosome that protects and stabilizes a linear chromosome. tmpzr1t_l9r_go_relaxed.owl Note that this term can be used in place of the obsolete cellular component term 'telomere ; GO:0005696'. Use with caution because this term refers to a specific protein complex and not a region of the chromosome. cellular_component owl:Class GO:0050986 biolink:NamedThing isopeptide cross-linking via N-(L-isoglutamyl)-glycine The formation of an isopeptide cross-link between peptidyl-glutamate and peptidyl-glycine to produce N-(L-isoglutamyl)-glycine, as found in the antibiotic microcin J25. tmpzr1t_l9r_go_relaxed.owl RESID:AA0360 biological_process owl:Class GO:0018262 biolink:NamedThing isopeptide cross-linking The formation of a covalent cross-link between or within peptide chains, where either the amino group or the carboxyl group, or both, are not attached to the alpha carbon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046798 biolink:NamedThing viral portal complex A multimeric ring of proteins through which the DNA enters and exits the viral capsid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016042 biolink:NamedThing lipid catabolic process The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. tmpzr1t_l9r_go_relaxed.owl multicellular organism lipid catabolic process|lipid catabolism|lipid degradation|lipid breakdown|lipolysis|multicellular organismal lipid catabolic process Wikipedia:Lipid_catabolism GO:0006724|GO:0044240 biological_process owl:Class GO:0070979 biolink:NamedThing protein K11-linked ubiquitination A protein ubiquitination process in which ubiquitin monomers are attached to a protein, and then ubiquitin polymers are formed by linkages between lysine residues at position 11 of the ubiquitin monomers. K11-linked polyubiquitination targets the substrate protein for degradation. The anaphase-promoting complex promotes the degradation of mitotic regulators by assembling K11-linked polyubiquitin chains. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-26T04:50:57Z biological_process owl:Class GO:0001927 biolink:NamedThing exocyst assembly The aggregation, arrangement and bonding together of various polypeptides into the exocyst complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060377 biolink:NamedThing negative regulation of mast cell differentiation Any process that decreases the rate, frequency or extent of mast cell differentiation, the process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002762 biolink:NamedThing negative regulation of myeloid leukocyte differentiation Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of myeloid leukocyte differentiation|inhibition of myeloid leukocyte differentiation|down-regulation of myeloid leukocyte differentiation|down regulation of myeloid leukocyte differentiation biological_process owl:Class GO:0050033 biolink:NamedThing L-rhamnono-1,4-lactonase activity Catalysis of the reaction: L-rhamnono-1,4-lactone + H(2)O = L-rhamnonate + H(+). tmpzr1t_l9r_go_relaxed.owl L-rhamno-gamma-lactonase activity|L-rhamnono-gamma-lactonase activity|L-rhamnono-1,4-lactone lactonohydrolase activity RHEA:10288|EC:3.1.1.65|KEGG_REACTION:R03772|MetaCyc:L-RHAMNONO-14-LACTONASE-RXN molecular_function owl:Class GO:1905888 biolink:NamedThing negative regulation of cellular response to very-low-density lipoprotein particle stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to very-low-density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl inhibition of cellular response to very-low-density lipoprotein particle stimulus|inhibition of cellular response to VLDL particle stimulus|down-regulation of cellular response to very-low-density lipoprotein particle stimulus|down regulation of cellular response to VLDL particle stimulus|down-regulation of cellular response to VLDL particle stimulus|downregulation of cellular response to VLDL particle stimulus|downregulation of cellular response to very-low-density lipoprotein particle stimulus|down regulation of cellular response to very-low-density lipoprotein particle stimulus|negative regulation of cellular response to VLDL particle stimulus bc 2017-02-01T10:09:25Z biological_process owl:Class GO:1905890 biolink:NamedThing regulation of cellular response to very-low-density lipoprotein particle stimulus Any process that modulates the frequency, rate or extent of cellular response to very-low-density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to VLDL particle stimulus bc 2017-02-01T10:09:16Z biological_process owl:Class GO:1900125 biolink:NamedThing regulation of hyaluronan biosynthetic process Any process that modulates the frequency, rate or extent of hyaluronan biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of hyaluronan anabolism|regulation of hyaluronan formation|regulation of hyaluronan synthesis|regulation of hyaluronan biosynthesis yaf 2012-02-23T01:09:21Z biological_process owl:Class GO:1905869 biolink:NamedThing negative regulation of 3'-UTR-mediated mRNA stabilization Any process that stops, prevents or reduces the frequency, rate or extent of 3'-UTR-mediated mRNA stabilization. tmpzr1t_l9r_go_relaxed.owl down-regulation of 3'-UTR-mediated mRNA stabilization|down regulation of 3'-UTR-mediated mRNA stabilization|down-regulation of 3'-untranslated region-mediated mRNA stabilization|downregulation of 3'-untranslated region-mediated mRNA stabilization|down regulation of 3'-untranslated region-mediated mRNA stabilization|negative regulation of 3'-untranslated region-mediated mRNA stabilization|inhibition of 3'-UTR-mediated mRNA stabilization|downregulation of 3'-UTR-mediated mRNA stabilization|inhibition of 3'-untranslated region-mediated mRNA stabilization rz 2017-01-27T11:51:46Z biological_process owl:Class GO:0050698 biolink:NamedThing proteoglycan sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + proteoglycan = adenosine 3',5'-bisphosphate + proteoglycan sulfate. A proteoglycan is a glycoprotein whose carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl proteoglycan sulphotransferase activity|proteoglycan sulfate transfer molecular_function owl:Class GO:0010166 biolink:NamedThing wax metabolic process The chemical reactions and pathways involving wax, a compound containing C16 and C18 fatty acids. tmpzr1t_l9r_go_relaxed.owl wax metabolism biological_process owl:Class GO:0001178 biolink:NamedThing regulation of transcriptional start site selection at RNA polymerase II promoter Any process that modulates the rate, frequency or extent of a process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript. tmpzr1t_l9r_go_relaxed.owl regulation of transcription start site selection at RNA polymerase II promoter krc 2011-06-20T02:06:00Z biological_process owl:Class GO:0060260 biolink:NamedThing regulation of transcription initiation from RNA polymerase II promoter Any process that modulates the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060400 biolink:NamedThing negative regulation of growth hormone receptor signaling pathway Any process that decreases the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl negative regulation of growth hormone receptor signalling pathway biological_process owl:Class GO:0071688 biolink:NamedThing striated muscle myosin thick filament assembly The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in striated muscle. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T03:52:21Z biological_process owl:Class GO:0018163 biolink:NamedThing protein-DNA covalent cross-linking via the 5'-end to peptidyl-tyrosine The formation of a covalent cross-link between DNA and a peptidyl-tyrosine residue by the formation of O4'-(phospho-5'-DNA)-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking via the 5' end to peptidyl-tyrosine RESID:AA0254 biological_process owl:Class GO:0045327 biolink:NamedThing protein-DNA covalent cross-linking via peptidyl-tyrosine The formation of a covalent cross-link between DNA and a peptidyl-tyrosine residue. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking via peptidyl-tyrosine biological_process owl:Class GO:0045541 biolink:NamedThing negative regulation of cholesterol biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol. tmpzr1t_l9r_go_relaxed.owl down regulation of cholesterol biosynthetic process|negative regulation of cholesterol anabolism|negative regulation of cholesterol synthesis|down-regulation of cholesterol biosynthetic process|negative regulation of cholesterol biosynthesis|negative regulation of cholesterol formation|downregulation of cholesterol biosynthetic process|inhibition of cholesterol biosynthetic process biological_process owl:Class GO:0051953 biolink:NamedThing negative regulation of amine transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl downregulation of amine transport|down-regulation of amine transport|inhibition of amine transport|down regulation of amine transport biological_process owl:Class GO:0048813 biolink:NamedThing dendrite morphogenesis The process in which the anatomical structures of a dendrite are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018965 biolink:NamedThing s-triazine compound metabolic process The chemical reactions and pathways involving any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms. tmpzr1t_l9r_go_relaxed.owl s-triazine compound metabolism UM-BBD_pathwayID:tria biological_process owl:Class GO:0150015 biolink:NamedThing apical proximal dendrite The dendrite of the dendritic tree, which emerges near the apical pole of a neuron, and which is the closest to the cell body of the neuron (the soma). tmpzr1t_l9r_go_relaxed.owl bc 2017-12-21T12:09:26Z cellular_component owl:Class GO:1990635 biolink:NamedThing proximal dendrite The dendrite of the dendritic tree that is closest to the neuronal cell body (the soma). tmpzr1t_l9r_go_relaxed.owl sl 2015-02-10T22:57:16Z cellular_component owl:Class GO:0045461 biolink:NamedThing sterigmatocystin biosynthetic process The chemical reactions and pathways resulting in the formation of sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds. tmpzr1t_l9r_go_relaxed.owl sterigmatocystin formation|sterigmatocystin anabolism|sterigmatocystin biosynthesis|sterigmatocystin synthesis biological_process owl:Class GO:2000836 biolink:NamedThing positive regulation of androgen secretion Any process that activates or increases the frequency, rate or extent of androgen secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:39:51Z biological_process owl:Class GO:2000834 biolink:NamedThing regulation of androgen secretion Any process that modulates the frequency, rate or extent of androgen secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:39:45Z biological_process owl:Class GO:1901160 biolink:NamedThing primary amino compound metabolic process The chemical reactions and pathways involving primary amino compound. tmpzr1t_l9r_go_relaxed.owl primary amino compound metabolism bf 2012-07-18T04:44:39Z biological_process owl:Class GO:0032336 biolink:NamedThing negative regulation of activin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of activin from a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of activin secretion|down regulation of activin secretion|downregulation of activin secretion|down-regulation of activin secretion biological_process owl:Class GO:0002124 biolink:NamedThing territorial aggressive behavior Aggressive behavior performed in defence of a fixed area against intruders, typically conspecifics. tmpzr1t_l9r_go_relaxed.owl territorial aggression biological_process owl:Class GO:0002118 biolink:NamedThing aggressive behavior A behavioral interaction between organisms in which one organism has the intention of inflicting physical damage on another individual. tmpzr1t_l9r_go_relaxed.owl aggression Wikipedia:Aggression biological_process owl:Class GO:0005369 biolink:NamedThing taurine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: taurine(out) + Na+(out) = taurine(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/chloride-dependent taurine transporter molecular_function owl:Class GO:0005368 biolink:NamedThing taurine transmembrane transporter activity Enables the transfer of taurine from one side of a membrane to the other. Taurine (2-aminoethanesulfonic acid) is a sulphur-containing amino acid derivative which is important in the metabolism of fats. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905774 biolink:NamedThing regulation of DNA helicase activity Any process that modulates the frequency, rate or extent of ATP-dependent DNA helicase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP-dependent DNA helicase activity rb 2013-10-15T21:19:52Z GO:1902449 biological_process owl:Class GO:1905462 biolink:NamedThing regulation of DNA duplex unwinding Any process that modulates the frequency, rate or extent of DNA duplex unwinding. tmpzr1t_l9r_go_relaxed.owl regulation of duplex DNA melting|regulation of DNA unwinding ans 2016-09-19T11:58:41Z biological_process owl:Class GO:1903784 biolink:NamedThing positive regulation of sodium ion import across plasma membrane Any process that activates or increases the frequency, rate or extent of sodium ion import across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of sodium ion import across plasma membrane|up-regulation of sodium ion import across plasma membrane|up regulation of sodium ion import across plasma membrane|activation of sodium ion import across plasma membrane nc 2015-01-07T16:49:00Z biological_process owl:Class GO:1902307 biolink:NamedThing positive regulation of sodium ion transmembrane transport Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl activation of sodium ion transmembrane transport|upregulation of sodium ion membrane transport|activation of sodium ion membrane transport|positive regulation of sodium ion membrane transport|up-regulation of sodium ion membrane transport|up regulation of sodium ion membrane transport|up-regulation of sodium ion transmembrane transport|up regulation of sodium ion transmembrane transport|upregulation of sodium ion transmembrane transport rl 2013-07-18T13:34:18Z biological_process owl:Class GO:1904062 biolink:NamedThing regulation of cation transmembrane transport Any process that modulates the frequency, rate or extent of cation transmembrane transport. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-18T21:11:43Z biological_process owl:Class GO:1902193 biolink:NamedThing 2-methylbut-2-enoyl-CoA(4-) catabolic process The chemical reactions and pathways resulting in the breakdown of 2-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbut-2-enoyl-CoA(4-) breakdown|2-methylbut-2-enoyl-CoA(4-) catabolism|2-methylbut-2-enoyl-CoA(4-) degradation ms 2013-06-06T09:40:41Z biological_process owl:Class GO:1903377 biolink:NamedThing negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of oxidative stress-induced neuron apoptosis|down regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|negative regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|downregulation of neuron apoptosis in response to oxidative stress|down regulation of neuron apoptosis in response to oxidative stress|downregulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|down-regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|neuroprotection against oxidative stress-induced apoptosis|inhibition of neuron apoptosis in response to oxidative stress|protection against oxidative stress-induced neuronal apoptosis|down-regulation of neuron apoptosis in response to oxidative stress|negative regulation of neuron apoptosis in response to oxidative stress|protection against oxidative stress-induced neuron apoptosis|inhibition of neuron intrinsic apoptotic signaling pathway in response to oxidative stress bf 2014-08-26T13:03:28Z biological_process owl:Class GO:1905036 biolink:NamedThing positive regulation of antifungal innate immune response Any process that activates or increases the frequency, rate or extent of an antifungal innate immune response. tmpzr1t_l9r_go_relaxed.owl upregulation of antifungal innate immune response|up regulation of antifungal innate immune response|up-regulation of antifungal innate immune response|activation of antifungal innate immune response dph 2016-03-07T20:08:26Z biological_process owl:Class GO:1905034 biolink:NamedThing regulation of antifungal innate immune response Any process that modulates the frequency, rate or extent of an antifungal innate immune response. tmpzr1t_l9r_go_relaxed.owl dph 2016-03-07T20:07:54Z biological_process owl:Class GO:0005976 biolink:NamedThing polysaccharide metabolic process The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl glycan metabolic process|multicellular organismal polysaccharide metabolic process|polysaccharide metabolism|glycan metabolism GO:0044263 biological_process owl:Class GO:0005975 biolink:NamedThing carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. tmpzr1t_l9r_go_relaxed.owl multicellular organismal carbohydrate metabolic process|carbohydrate metabolism|single-organism carbohydrate metabolic process Wikipedia:Carbohydrate_metabolism jl 2012-10-23T15:40:34Z GO:0044261|GO:0044723 biological_process owl:Class GO:0032074 biolink:NamedThing negative regulation of nuclease activity Any process that stops or reduces the rate of nuclease activity, the hydrolysis of ester linkages within nucleic acids. tmpzr1t_l9r_go_relaxed.owl downregulation of nuclease activity|down regulation of nuclease activity|nuclease inhibitor|down-regulation of nuclease activity|inhibition of nuclease activity biological_process owl:Class GO:1905406 biolink:NamedThing positive regulation of mitotic cohesin loading Any process that activates or increases the frequency, rate or extent of mitotic cohesin loading. tmpzr1t_l9r_go_relaxed.owl vw 2016-08-25T14:49:01Z biological_process owl:Class GO:1905405 biolink:NamedThing regulation of mitotic cohesin loading Any process that modulates the frequency, rate or extent of mitotic cohesin loading. tmpzr1t_l9r_go_relaxed.owl vw 2016-08-25T14:48:46Z biological_process owl:Class GO:0060475 biolink:NamedThing positive regulation of actin filament polymerization involved in acrosome reaction Any process that activates or increases the frequency, rate or extent of actin polymerization as part of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of actin polymerization involved in acrosome reaction biological_process owl:Class GO:1905489 biolink:NamedThing regulation of sensory neuron axon guidance Any process that modulates the frequency, rate or extent of sensory neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl hbye 2016-09-23T13:18:56Z biological_process owl:Class GO:0002845 biolink:NamedThing positive regulation of tolerance induction to tumor cell Any process that activates or increases the frequency, rate, or extent of tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl activation of tolerance induction to tumor cell|stimulation of tolerance induction to tumor cell|up-regulation of tolerance induction to tumor cell|positive regulation of tolerance induction to tumour cell|up regulation of tolerance induction to tumor cell|upregulation of tolerance induction to tumor cell biological_process owl:Class GO:2000753 biolink:NamedThing positive regulation of glucosylceramide catabolic process Any process that activates or increases the frequency, rate or extent of glucosylceramide catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucosylceramide breakdown|positive regulation of glucosylceramide catabolism|positive regulation of glucosylceramide degradation rl 2011-06-16T03:12:09Z biological_process owl:Class GO:0086064 biolink:NamedThing cell communication by electrical coupling involved in cardiac conduction The process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels and contributes to the process of cardiac conduction. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T08:49:44Z biological_process owl:Class GO:2000296 biolink:NamedThing negative regulation of hydrogen peroxide catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of hydrogen peroxide degradation|negative regulation of hydrogen peroxide catabolism|negative regulation of detoxification of hydrogen peroxide|negative regulation of hydrogen peroxide breakdown|negative regulation of hydrogen peroxide removal|negative regulation of detoxification of H2O2|negative regulation of hydrogen peroxide scavenging|negative regulation of H2O2 catabolic process|negative regulation of H2O2 scavenging rl 2010-12-21T03:30:55Z biological_process owl:Class GO:0003255 biolink:NamedThing endocardial precursor cell differentiation The process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of an endocardial precursor cell. A endocardial precursor cell is a cell that has been committed to a endocardial cell fate, but will undergo further cell divisions rather than terminally differentiate. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T12:09:43Z biological_process owl:Class GO:0039587 biolink:NamedThing suppression by virus of host tetherin activity Any process in which a virus stops, prevents, or reduces the activity of host tetherin activity. Tetherin (also known as BST2) is an alpha interferon-inducible cellular factor that impairs the release of many enveloped viruses. By blocking tetherin activity, many viruses circumvent its antiviral effects. tmpzr1t_l9r_go_relaxed.owl inhibition of host BST2/Tetherin by virus https://github.com/geneontology/go-ontology/issues/22166 bf 2012-05-04T02:33:29Z biological_process owl:Class GO:1905616 biolink:NamedThing regulation of miRNA-mediated gene silencing by inhibition of translation Any process that modulates the frequency, rate or extent of miRNA-mediated gene silencing by inhibition of translation. tmpzr1t_l9r_go_relaxed.owl regulation of inhibition of translation involved in gene silencing by miRNA|regulation of down-regulation of translation involved in gene silencing by miRNA|regulation of gene silencing by miRNA, negative regulation of translation|regulation of miRNA-mediated gene silencing, negative regulation of translation|regulation of down regulation of translation involved in gene silencing by miRNA|regulation of downregulation of translation involved in gene silencing by miRNA|regulation of negative regulation of translation involved in gene silencing by microRNA|regulation of miRNA mediated inhibition of translation https://github.com/geneontology/go-ontology/issues/22389 bc 2016-10-28T11:47:49Z biological_process owl:Class GO:0045589 biolink:NamedThing regulation of regulatory T cell differentiation Any process that modulates the frequency, rate or extent of differentiation of regulatory T cells. tmpzr1t_l9r_go_relaxed.owl regulation of regulatory T-lymphocyte differentiation|regulation of suppressor T lymphocyte differentiation|regulation of regulatory T cell development|regulation of regulatory T-cell differentiation|regulation of regulatory T lymphocyte differentiation|regulation of suppressor T-cell differentiation|regulation of suppressor T cell differentiation|regulation of suppressor T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015835 biolink:NamedThing peptidoglycan transport The directed movement of peptidoglycans, a class of glycoconjugates found in bacterial cell walls, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl murein transport biological_process owl:Class GO:0002671 biolink:NamedThing negative regulation of B cell anergy Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell anergy. tmpzr1t_l9r_go_relaxed.owl negative regulation of B-cell anergy|negative regulation of B lymphocyte anergy|down-regulation of B cell anergy|inhibition of B cell anergy|downregulation of B cell anergy|negative regulation of B-lymphocyte anergy|down regulation of B cell anergy biological_process owl:Class GO:0002912 biolink:NamedThing negative regulation of lymphocyte anergy Any process that stops, prevents, or reduces the frequency, rate, or extent of lymphocyte anergy. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphocyte anergy|down-regulation of lymphocyte anergy|down regulation of lymphocyte anergy|inhibition of lymphocyte anergy biological_process owl:Class GO:0006253 biolink:NamedThing dCTP catabolic process The chemical reactions and pathways resulting in the breakdown of dCTP, deoxycytidine triphosphate. tmpzr1t_l9r_go_relaxed.owl dCTP catabolism|dCTP breakdown|dCTP degradation biological_process owl:Class GO:0046065 biolink:NamedThing dCTP metabolic process The chemical reactions and pathways involving dCTP, deoxycytidine triphosphate. tmpzr1t_l9r_go_relaxed.owl dCTP metabolism biological_process owl:Class GO:0051619 biolink:NamedThing inhibition of histamine uptake Any process that prevents the activation of the directed movement of histamine into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of histamine import biological_process owl:Class GO:0051617 biolink:NamedThing negative regulation of histamine uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of histamine into a cell. tmpzr1t_l9r_go_relaxed.owl down regulation of histamine uptake|negative regulation of histamine import|down-regulation of histamine uptake|downregulation of histamine uptake biological_process owl:Class GO:0004046 biolink:NamedThing aminoacylase activity Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid. tmpzr1t_l9r_go_relaxed.owl histozyme activity|hippurase activity|L-amino-acid acylase activity|acylase I activity|aminoacylase I activity|L-aminoacylase activity|long acyl amidoacylase activity|alpha-N-acylaminoacid hydrolase activity|amido acid deacylase activity|N-acyl-L-amino-acid amidohydrolase activity|dehydropeptidase II activity|benzamidase activity|short acyl amidoacylase activity RHEA:15565|MetaCyc:AMINOACYLASE-RXN|Reactome:R-HSA-5433074|Reactome:R-HSA-5579081|Reactome:R-HSA-9638046|EC:3.5.1.14 molecular_function owl:Class GO:0050598 biolink:NamedThing taxane 13-alpha-hydroxylase activity Catalysis of the reaction: H(+) + NADPH + O(2) + taxa-4(20),11-dien-5alpha-ol = H(2)O + NADP(+) + taxa-4(20),11-dien-5alpha,13alpha-diol. tmpzr1t_l9r_go_relaxed.owl taxane 13a-hydroxylase activity|taxa-4(20),11-dien-5alpha-ol,NADPH:oxygen oxidoreductase (13alpha-hydroxylating)|taxane 13alpha-hydroxylase activity KEGG_REACTION:R06308|EC:1.14.14.106|RHEA:18949|MetaCyc:1.14.13.77-RXN molecular_function owl:Class GO:0042128 biolink:NamedThing nitrate assimilation The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. tmpzr1t_l9r_go_relaxed.owl assimilatory nitrate reduction MetaCyc:PWY-381 biological_process owl:Class GO:0071941 biolink:NamedThing nitrogen cycle metabolic process A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nitrogen_cycle mah 2010-09-30T05:21:03Z biological_process owl:Class GO:0050211 biolink:NamedThing procollagen galactosyltransferase activity Catalysis of the reaction: UDP-galactose + procollagen 5-hydroxy-L-lysine = UDP + procollagen 5-(D-galactosyloxy)-L-lysine. tmpzr1t_l9r_go_relaxed.owl UDPgalactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity|collagen hydroxylysyl galactosyltransferase activity|uridine diphosphogalactose-collagen galactosyltransferase activity|UDP-galactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity|UDPgalactose:5-hydroxylysine-collagen galactosyltransferase activity|collagen galactosyltransferase activity|UDP galactose-collagen galactosyltransferase activity|hydroxylysine galactosyltransferase activity EC:2.4.1.50|Reactome:R-HSA-1981120|MetaCyc:PROCOLLAGEN-GALACTOSYLTRANSFERASE-RXN|RHEA:12637|Reactome:R-HSA-1981128 molecular_function owl:Class GO:1902841 biolink:NamedThing regulation of netrin-activated signaling pathway Any process that modulates the frequency, rate or extent of netrin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of netrin signaling pathway|regulation of netrin-activated signalling pathway|regulation of netrin-mediated signaling pathway|regulation of netrin-activated signal transduction pathway kmv 2014-04-01T15:24:46Z biological_process owl:Class GO:0014068 biolink:NamedThing positive regulation of phosphatidylinositol 3-kinase signaling Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade. tmpzr1t_l9r_go_relaxed.owl activation of phosphoinositide 3-kinase cascade|positive regulation of PI3K cascade|positive regulation of phosphatidylinositol 3-kinase cascade|up regulation of phosphatidylinositol 3-kinase cascade|stimulation of phosphatidylinositol 3-kinase cascade|upregulation of phosphatidylinositol 3-kinase cascade|up-regulation of phosphatidylinositol 3-kinase cascade|positive regulation of PI 3-kinase cascade|positive regulation of phosphoinositide 3-kinase cascade biological_process owl:Class GO:0014066 biolink:NamedThing regulation of phosphatidylinositol 3-kinase signaling Any process that modulates the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade. tmpzr1t_l9r_go_relaxed.owl regulation of PI3K cascade|regulation of phosphoinositide 3-kinase cascade|regulation of phosphatidylinositol 3-kinase cascade|regulation of PI 3-kinase cascade biological_process owl:Class GO:0045443 biolink:NamedThing juvenile hormone secretion The regulated release of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000154 biolink:NamedThing rRNA modification The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl rRNA editing The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specific child terms of 'RNA editing'. GO:0016548 biological_process owl:Class GO:2000585 biolink:NamedThing positive regulation of platelet-derived growth factor receptor-alpha signaling pathway Any process that activates or increases the frequency, rate or extent of platelet-derived growth factor receptor-alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of PDGF receptor-alpha signaling pathway|positive regulation of PDGFR-alpha signaling pathway|positive regulation of platelet-derived growth factor receptor-alpha signalling pathway|positive regulation of alphaPDGF receptor signaling pathway bf 2011-04-07T03:26:35Z biological_process owl:Class GO:2000583 biolink:NamedThing regulation of platelet-derived growth factor receptor-alpha signaling pathway Any process that modulates the frequency, rate or extent of platelet-derived growth factor receptor-alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of platelet-derived growth factor receptor-alpha signalling pathway|regulation of PDGF receptor-alpha signaling pathway|regulation of PDGFR-alpha signaling pathway|regulation of alphaPDGF receptor signaling pathway bf 2011-04-07T03:26:25Z biological_process owl:Class GO:0001580 biolink:NamedThing detection of chemical stimulus involved in sensory perception of bitter taste The series of events required for a bitter taste stimulus to be received and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory transduction of bitter taste|sensory transduction of chemical stimulus during perception of bitter taste|sensory detection of bitter taste|perception of bitter taste, detection of chemical stimulus|sensory detection of chemical stimulus during perception of bitter taste|bitter taste detection|perception of bitter taste, sensory transduction of chemical stimulus biological_process owl:Class GO:1904871 biolink:NamedThing positive regulation of protein localization to Cajal body Any process that activates or increases the frequency, rate or extent of protein localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl up regulation of protein localisation to Cajal body|up-regulation of protein localization to Cajal body|upregulation of protein localization in Cajal body|up-regulation of protein localization in Cajal body|positive regulation of protein localization in Cajal body|up regulation of protein localization to Cajal body|positive regulation of protein localisation in Cajal body|upregulation of protein localisation in Cajal body|activation of protein localization to Cajal body|up regulation of protein localization in Cajal body|up-regulation of protein localisation in Cajal body|upregulation of protein localization to Cajal body|activation of protein localization in Cajal body|upregulation of protein localisation to Cajal body|positive regulation of protein localisation to Cajal body|activation of protein localisation to Cajal body|activation of protein localisation in Cajal body|up regulation of protein localisation in Cajal body|up-regulation of protein localisation to Cajal body nc 2015-12-18T11:17:45Z biological_process owl:Class GO:1900182 biolink:NamedThing positive regulation of protein localization to nucleus Any process that activates or increases the frequency, rate or extent of protein localization to nucleus. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localization in nucleus|activation of protein localisation to nucleus|up regulation of protein localization in nucleus|activation of protein localization to nucleus|activation of protein localization in nucleus|up regulation of protein localization in cell nucleus|upregulation of protein localization to nucleus|positive regulation of protein localization in cell nucleus|up regulation of protein localisation to nucleus|upregulation of protein localisation to nucleus|activation of protein localization in cell nucleus|upregulation of protein localization in nucleus|positive regulation of protein localisation to nucleus|upregulation of protein localization in cell nucleus|up-regulation of protein localization in cell nucleus|positive regulation of protein localization in nucleus|up-regulation of protein localization to nucleus|up-regulation of protein localisation to nucleus|up regulation of protein localization to nucleus bf 2012-03-12T01:23:52Z biological_process owl:Class GO:0046654 biolink:NamedThing tetrahydrofolate biosynthetic process The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. tmpzr1t_l9r_go_relaxed.owl tetrahydrofolate synthesis|tetrahydrofolate formation|tetrahydrofolate biosynthesis|tetrahydrofolate anabolism MetaCyc:FOLSYN-PWY biological_process owl:Class GO:0046653 biolink:NamedThing tetrahydrofolate metabolic process The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. tmpzr1t_l9r_go_relaxed.owl tetrahydrofolate metabolism biological_process owl:Class GO:0099026 biolink:NamedThing anchored component of presynaptic membrane The component of the presynaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl anchored component of presynaptic plasma membrane cellular_component owl:Class GO:0098889 biolink:NamedThing intrinsic component of presynaptic membrane The component of the presynaptic membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to presynaptic membrane cellular_component owl:Class GO:0034852 biolink:NamedThing 4,4-dimethyl-3-oxopentanal dehydrogenase activity Catalysis of the reaction: 4,4-dimethyl-3-oxopentanal + H2O = 4,4-dimethyl-3-oxopentanoate + 3 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1309 molecular_function owl:Class GO:0102297 biolink:NamedThing selenate adenylyltransferase activity Catalysis of the reaction: selenic acid + ATP + 2 H+ <=> adenylyl selenate + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12720 molecular_function owl:Class GO:0016779 biolink:NamedThing nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.-|Reactome:R-HSA-6782434 molecular_function owl:Class GO:0052851 biolink:NamedThing ferric-chelate reductase (NADPH) activity Catalysis of the reaction: 2 Fe3+-siderophore + NADP(+) + H(+) -> 2 Fe2+-siderophore + NADPH. tmpzr1t_l9r_go_relaxed.owl ferric reductase, NADPH-dependent activity|ferric chelate reductase activity|iron chelate reductase activity https://github.com/geneontology/go-ontology/issues/21029 RHEA:28795|KEGG_REACTION:R09541|MetaCyc:RXN0-6555|EC:1.16.1.9 ai 2011-12-05T11:04:23Z molecular_function owl:Class GO:0000293 biolink:NamedThing ferric-chelate reductase activity Catalysis of the reaction: 2 Fe3+-siderophore + electron donor -> 2 Fe3+-siderophore + electron acceptor. tmpzr1t_l9r_go_relaxed.owl ferric chelate reductase activity|iron chelate reductase activity https://github.com/geneontology/go-ontology/issues/21029 molecular_function owl:Class GO:0021678 biolink:NamedThing third ventricle development The process whose specific outcome is the progression of the third ventricle over time, from its formation to the mature structure. The third ventricle is the narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the hypothalamus, its anterior wall by the lamina terminalis, and its roof by ependyma, and it communicates with the fourth ventricle by the cerebral aqueduct, and with the lateral ventricles by the interventricular foramina. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046167 biolink:NamedThing glycerol-3-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate formation|glycerol-3-phosphate biosynthesis|glycerol-3-phosphate anabolism|glycerol-3-phosphate synthesis biological_process owl:Class GO:0052067 biolink:NamedThing antiphagocytosis Any process in which a symbiont avoids phagocytosis by a host cell, for example a phagocyte or a macrophage. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of entry into host cell via phagocytosis|inhibition by symbiont of entry into host cell via phagocytosis|negative regulation by symbiont of entry into host cell via phagocytosis|negative regulation by organism of entry into cell of other organism via phagocytosis involved in symbiotic interaction|modulation by symbiont of entry into host via phagocytosis|negative regulation by organism of entry into host cell via host phagocytosis|phagocytosis avoidence|modulation by organism of entry into host via host phagocytosis|downregulation by symbiont of entry into host cell via phagocytosis|down-regulation by symbiont of entry into host cell via phagocytosis https://github.com/geneontology/go-ontology/issues/18562|https://github.com/geneontology/go-ontology/issues/17983 GO:0052380|GO:0052483 biological_process owl:Class GO:0030682 biolink:NamedThing mitigation of host defenses by symbiont A process by which an organism avoids or tolerates the effects of its host organism's defense response. The host defense response is mounted by the host in response to the presence of the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl avoidance of host defenses|evasion or tolerance of host defenses|evasion of host defence response|avoidance of host defences|avoidance of defenses of other organism during symbiotic interaction|evasion or tolerance of defenses of other organism during symbiotic interaction|avoidance of defenses of other organism involved in symbiotic interaction|evasion or tolerance of defenses of other organism|evasion or tolerance of defense response of other organism involved in symbiotic interaction|evasion or tolerance of defense response of other organism during symbiotic interaction|evasion or tolerance of host defense response|evasion of other organism defence response|evasion or tolerance of defenses of other organism involved in symbiotic interaction GO:0051807|GO:0051832|GO:0044413|GO:0044415|GO:0051834 biological_process owl:Class GO:1902906 biolink:NamedThing proteasome storage granule assembly The aggregation, arrangement and bonding together of a set of components to form a proteasome storage granule. tmpzr1t_l9r_go_relaxed.owl PSG assembly|sequestration of proteasome core complex in proteasome storage granule|proteasome storage granule formation|PSG formation https://github.com/geneontology/go-ontology/issues/20458 di 2014-04-16T01:59:41Z GO:1990237 biological_process owl:Class GO:0140694 biolink:NamedThing non-membrane-bounded organelle assembly The aggregation, arrangement and bonding together of a set of components to form a non-membrane-bounded organelle. tmpzr1t_l9r_go_relaxed.owl non-membrane-enclosed organelle assembly|non-membrane-enclosed organelle formation|non-membrane-bounded organelle formation https://github.com/geneontology/go-ontology/issues/21939 pg 2021-08-09T15:30:06Z biological_process owl:Class GO:0045809 biolink:NamedThing positive regulation of establishment of competence for transformation Any process that activates or increases the frequency, rate or extent of establishment of competence for transformation. tmpzr1t_l9r_go_relaxed.owl up regulation of establishment of competence for transformation|activation of establishment of competence for transformation|up-regulation of establishment of competence for transformation|stimulation of establishment of competence for transformation|activator of the establishment of competence for transformation activity|upregulation of establishment of competence for transformation biological_process owl:Class GO:0045304 biolink:NamedThing regulation of establishment of competence for transformation Any process that modulates the frequency, rate or extent of the process in which a cell becomes able to take up and incorporate extracellular DNA into its genome. tmpzr1t_l9r_go_relaxed.owl regulator of establishment of competence for transformation activity biological_process owl:Class GO:0005739 biolink:NamedThing mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. tmpzr1t_l9r_go_relaxed.owl mitochondria Wikipedia:Mitochondrion|NIF_Subcellular:sao1860313010 Some anaerobic or microaerophilic organisms (e.g. Entamoeba histolytica, Giardia intestinalis and several Microsporidia species) do not have mitochondria, and contain mitochondrion-related organelles (MROs) instead, called mitosomes or hydrogenosomes, very likely derived from mitochondria. To annotate gene products located in these mitochondrial relics in species such as Entamoeba histolytica, Giardia intestinalis or others, please use GO:0032047 'mitosome' or GO:0042566 'hydrogenosome'. (See PMID:24316280 for a list of species currently known to contain mitochondrion-related organelles.) cellular_component owl:Class GO:0019921 biolink:NamedThing peptidyl-1-thioglycine biosynthetic process, carboxy-terminal The chemical reactions and pathways resulting in the formation of carboxy-terminal peptidyl-1-thioglycine, which has a carboxy-terminal thiocarboxy-C(=O)-SH bond. tmpzr1t_l9r_go_relaxed.owl peptidyl-1-thioglycine formation, carboxy-terminal|peptidyl-1-thioglycine anabolism, carboxy-terminal|peptidyl-1-thioglycine synthesis, carboxy-terminal RESID:AA0265 biological_process owl:Class GO:0018173 biolink:NamedThing peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine The chemical reactions and pathways resulting in the formation of peptidyl-1-thioglycine from other compounds, including peptidyl-glycine. tmpzr1t_l9r_go_relaxed.owl peptidyl-1-thioglycine synthesis from peptidyl-glycine|peptidyl-1-thioglycine formation from peptidyl-glycine|peptidyl-1-thioglycine anabolism from peptidyl-glycine RESID:AA0265 biological_process owl:Class GO:0070999 biolink:NamedThing detection of mechanical stimulus involved in sensory perception of gravity The series of events involved in the perception of gravity in which a sensory mechanical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-03T03:27:30Z biological_process owl:Class GO:0009590 biolink:NamedThing detection of gravity The series of events in which a gravitational stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of gravity biological_process owl:Class GO:0060569 biolink:NamedThing positive regulation of peptide hormone processing Any process that increases the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-29T03:22:05Z biological_process owl:Class GO:0015334 biolink:NamedThing high-affinity oligopeptide transmembrane transporter activity Enables the transfer of oligopeptide from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl high affinity oligopeptide transporter activity|high-affinity oligopeptide transporter activity molecular_function owl:Class GO:0035673 biolink:NamedThing oligopeptide transmembrane transporter activity Enables the transfer of oligopeptides from one side of a membrane to the other. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl oligopeptide transporter activity bf 2011-02-08T02:20:14Z GO:0015198 molecular_function owl:Class GO:1902653 biolink:NamedThing secondary alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of secondary alcohol. tmpzr1t_l9r_go_relaxed.owl secondary alcohol synthesis|secondary alcohol anabolism|secondary alcohol biosynthesis|secondary alcohol formation tt 2014-01-22T10:15:02Z biological_process owl:Class GO:0034333 biolink:NamedThing adherens junction assembly The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl adherens junction formation biological_process owl:Class GO:0007043 biolink:NamedThing cell-cell junction assembly The aggregation, arrangement and bonding together of a set of components to form a junction between cells. tmpzr1t_l9r_go_relaxed.owl intercellular junction assembly biological_process owl:Class GO:1902327 biolink:NamedThing bacterial-type DNA replication DNA ligation Any DNA ligation that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation involved in bacterial-type DNA replication jl 2013-07-25T10:47:46Z biological_process owl:Class GO:0040015 biolink:NamedThing negative regulation of multicellular organism growth Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organism to reach its usual body size. tmpzr1t_l9r_go_relaxed.owl negative regulation of body growth|negative regulation of body size biological_process owl:Class GO:0047300 biolink:NamedThing pyridoxamine-pyruvate transaminase activity Catalysis of the reaction: pyridoxamine + pyruvate = L-alanine + pyridoxal. tmpzr1t_l9r_go_relaxed.owl pyridoxamine:pyruvate aminotransferase activity|pyridoxamine--pyruvate aminotransferase activity|pyridoxamine-pyruvate aminotransferase activity|pyridoxamine-pyruvic transaminase|pyridoxamineu-pyruvic transaminase activity KEGG_REACTION:R01712|RHEA:12841|EC:2.6.1.30|MetaCyc:2.6.1.30-RXN molecular_function owl:Class GO:0010883 biolink:NamedThing regulation of lipid storage Any process that modulates the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. tmpzr1t_l9r_go_relaxed.owl regulation of lipid sequestration biological_process owl:Class GO:0004994 biolink:NamedThing somatostatin receptor activity Combining with somatostatin to initiate a change in cell activity. Somatostatin is a peptide hormone that regulates the endocrine system by signaling via G protein-coupled somatostatin receptors. Somatostatin has two active forms produced by proteolytic cleavage: a 14 amino acid peptide (SST-14) and a 28 amino acid peptide (SST-28). tmpzr1t_l9r_go_relaxed.owl somatotrophin release inhibiting factor receptor activity|SRIF receptor activity|GHIH receptor activity|growth hormone-inhibiting hormone receptor activity|SST receptor activity molecular_function owl:Class GO:0043680 biolink:NamedThing filiform apparatus A complex of cell wall invaginations in a synergid cell, similar to those in transfer cells. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098992 biolink:NamedThing neuronal dense core vesicle A dense core vesicle (granule) that is part of a neuron. These vesicles typically contain neuropeptides. They can be found in all parts of neurons, including the soma, dendrites, axonal swellings (varicosities) and synaptic terminals. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031045 biolink:NamedThing dense core granule Electron-dense organelle with a granular internal matrix; contains proteins destined to be secreted. tmpzr1t_l9r_go_relaxed.owl dense core vesicle NIF_Subcellular:sao772007592 cellular_component owl:Class GO:1902237 biolink:NamedThing positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of an endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of endoplasmic reticulum stress-induced apoptosis|positive regulation of ER stress-induced apoptosis|positive regulation of apoptosis triggered by ER stress|positive regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|up regulation of apoptosis in response to ER stress|positive regulation of apoptosis in response to ER stress|upregulation of endoplasmic reticulum stress-induced apoptosis|positive regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|up-regulation of endoplasmic reticulum stress-induced apoptosis|activation of ER stress-induced apoptosis|activation of apoptosis triggered by ER stress|activation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|upregulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|positive regulation of endoplasmic reticulum stress-induced apoptosis|upregulation of apoptosis triggered by ER stress|up regulation of ER stress-induced apoptosis|up regulation of apoptosis triggered by ER stress|up regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|upregulation of ER stress-induced apoptosis|up-regulation of apoptosis in response to ER stress|up-regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|activation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|up-regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|activation of apoptosis in response to ER stress|up-regulation of apoptosis triggered by ER stress|up regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|upregulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|activation of endoplasmic reticulum stress-induced apoptosis|upregulation of apoptosis in response to ER stress|up-regulation of ER stress-induced apoptosis rl 2013-06-18T15:19:49Z biological_process owl:Class GO:2001244 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of intrinsic apoptotic pathway|positive regulation of intrinsic apoptotic signalling pathway|positive regulation of mitochondrial-mediated apoptotic pathway|positive regulation of intrinsic apoptosis pr 2011-11-24T01:36:07Z biological_process owl:Class GO:0043672 biolink:NamedThing nexine The inner, non-sculptured part of the exine which lies below the sexine. tmpzr1t_l9r_go_relaxed.owl Note that nexine is distinguished on purely morphological criteria; compare with 'endexine ; GO:0043671'. See also 'sexine ; GO:0043673'. cellular_component owl:Class GO:1901691 biolink:NamedThing proton binding Binding to proton. tmpzr1t_l9r_go_relaxed.owl hydrogen ion binding al 2012-12-07T13:50:53Z molecular_function owl:Class GO:1900498 biolink:NamedThing negative regulation of butyryl-CoA catabolic process to butanol Any process that stops, prevents or reduces the frequency, rate or extent of butyryl-CoA catabolic process to butanol. tmpzr1t_l9r_go_relaxed.owl down regulation of butyryl-CoA catabolic process to butanol|negative regulation of butyryl-CoA catabolism to butanol|down-regulation of butyryl-CoA catabolism to butanol|downregulation of butyryl-CoA catabolism to butanol|down regulation of butyryl-CoA catabolism to butanol|inhibition of butyryl-CoA catabolic process to butanol|inhibition of butyryl-CoA catabolism to butanol|down-regulation of butyryl-CoA catabolic process to butanol|downregulation of butyryl-CoA catabolic process to butanol tt 2012-05-02T03:53:31Z biological_process owl:Class GO:0075270 biolink:NamedThing negative regulation of aecium development Any process that stops, prevents, or reduces the frequency, rate or extent of aecium development, a process in which a cuplike structure containing chains of aeciospores is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034364 biolink:NamedThing high-density lipoprotein particle A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process. tmpzr1t_l9r_go_relaxed.owl HDL particle|HDL complex|high-density lipoprotein class complex|HDL3|HDL2 cellular_component owl:Class GO:1902630 biolink:NamedThing regulation of membrane hyperpolarization Any process that modulates the frequency, rate or extent of membrane hyperpolarization. tmpzr1t_l9r_go_relaxed.owl krc 2014-01-17T18:27:56Z biological_process owl:Class GO:0031119 biolink:NamedThing tRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047418 biolink:NamedThing phthalyl amidase activity Catalysis of the reaction: H2O + a phthalylamide = phthalate + substituted amine. tmpzr1t_l9r_go_relaxed.owl o-phthalyl amidase activity|phthalyl-amide amidohydrolase activity MetaCyc:3.5.1.79-RXN|EC:3.5.1.79|RHEA:18297 molecular_function owl:Class GO:0006798 biolink:NamedThing polyphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a polyphosphate, the anion or salt of polyphosphoric acid. tmpzr1t_l9r_go_relaxed.owl polyphosphate breakdown|polyphosphate catabolism|polyphosphate degradation biological_process owl:Class GO:0006797 biolink:NamedThing polyphosphate metabolic process The chemical reactions and pathways involving a polyphosphate, the anion or salt of polyphosphoric acid. tmpzr1t_l9r_go_relaxed.owl polyphosphate metabolism biological_process owl:Class GO:0045841 biolink:NamedThing negative regulation of mitotic metaphase/anaphase transition Any process that stops, prevents, or reduces the frequency, rate or extent of the cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the activation of the anaphase promoting complex by Cdc20/Sleepy homolog which results in the degradation of Securin. tmpzr1t_l9r_go_relaxed.owl downregulation of mitotic metaphase/anaphase transition|down-regulation of mitotic metaphase/anaphase transition|down regulation of mitotic metaphase/anaphase transition|inhibition of mitotic metaphase/anaphase transition biological_process owl:Class GO:2000816 biolink:NamedThing negative regulation of mitotic sister chromatid separation Any process that stops, prevents or reduces the frequency, rate or extent of mitotic sister chromatid separation. tmpzr1t_l9r_go_relaxed.owl negative regulation of sister chromatid separation during mitosis|negative regulation of mitotic sister chromatid resolution|negative regulation of chromosome separation during mitosis|negative regulation of mitotic chromosome separation mah 2011-07-11T04:45:06Z biological_process owl:Class GO:0102584 biolink:NamedThing cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucosyltransferase activity Catalysis of the reaction: cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + UDP-alpha-D-glucose <=> cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15330 molecular_function owl:Class GO:1901496 biolink:NamedThing positive regulation of cysteine metabolic process Any process that activates or increases the frequency, rate or extent of cysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of cysteine metabolic process|up-regulation of cysteine metabolism|up regulation of cysteine metabolic process|upregulation of cysteine metabolism|up-regulation of cysteine metabolic process|activation of cysteine metabolic process|positive regulation of cysteine metabolism|up regulation of cysteine metabolism|activation of cysteine metabolism vw 2012-10-16T14:28:51Z biological_process owl:Class GO:0031337 biolink:NamedThing positive regulation of sulfur amino acid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids. tmpzr1t_l9r_go_relaxed.owl positive regulation of sulfur amino acid metabolism|up-regulation of sulfur amino acid metabolic process|activation of sulfur amino acid metabolic process|up regulation of sulfur amino acid metabolic process|upregulation of sulfur amino acid metabolic process|stimulation of sulfur amino acid metabolic process biological_process owl:Class GO:0047747 biolink:NamedThing cholate-CoA ligase activity Catalysis of the reactions: (1) ATP + cholate + CoA = AMP + diphosphate + choloyl-CoA and (2) ATP + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate + CoA = AMP + diphosphate + (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoate-CoA synthetase activity|BAL activity|cholic acid:CoA ligase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl coenzyme A synthetase activity|choloyl-CoA synthetase activity|cholate:CoA ligase (AMP-forming)|trihydroxycoprostanoyl-CoA synthetase activity|bile acid coenzyme A ligase activity|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate-CoA ligase activity|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoate-CoA ligase activity|THCA-CoA ligase activity|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate:CoA ligase (AMP-forming) activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate-CoA synthetase activity|bile acid CoA ligase activity|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoyl coenzyme A synthetase activity|cholyl-CoA synthetase activity|choloyl coenzyme A synthetase activity|cholate thiokinase activity|cholic thiokinase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate-CoA ligase activity|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate--CoA ligase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate-CoA ligase activity MetaCyc:CHOLATE--COA-LIGASE-RXN|EC:6.2.1.7 GO:0047477 molecular_function owl:Class GO:0006278 biolink:NamedThing RNA-dependent DNA biosynthetic process A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043375 biolink:NamedThing CD8-positive, alpha-beta T cell lineage commitment The process in which an immature T cell becomes committed to becoming a CD8-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta T-cell lineage commitment|CD8-positive, alpha-beta T lymphocyte lineage commitment|CD8-positive, alpha-beta T-lymphocyte lineage commitment|CD8-positive, alpha-beta T cell fate commitment biological_process owl:Class GO:0060914 biolink:NamedThing heart formation The developmental process pertaining to the initial formation of the heart from unspecified parts. This process begins with the specific processes that contribute to the appearance of the heart field and the arrival of cardiac neural crest to the heart region. The process ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl cardiogenesis dph 2009-09-17T09:02:13Z biological_process owl:Class GO:0000089 biolink:NamedThing mitotic metaphase The cell cycle phase, following prophase, during which chromosomes become aligned on the equatorial plate of the cell as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0051323 biolink:NamedThing metaphase The cell cycle phase, following prophase or prometaphase in higher eukaryotes, during which chromosomes become aligned on the equatorial plate of the cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Metaphase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0005213 biolink:NamedThing structural constituent of egg chorion The action of a molecule that contributes to the structural integrity of an egg chorion. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl structural constituent of chorion|structural protein of chorion molecular_function owl:Class GO:0051022 biolink:NamedThing Rho GDP-dissociation inhibitor binding Binding to a Rho GDP-dissociation inhibitor protein. tmpzr1t_l9r_go_relaxed.owl Rho GDI binding molecular_function owl:Class GO:0051021 biolink:NamedThing GDP-dissociation inhibitor binding Binding to a GDP-dissociation inhibitor protein. tmpzr1t_l9r_go_relaxed.owl GDI binding molecular_function owl:Class GO:0047949 biolink:NamedThing glutarate-semialdehyde dehydrogenase (NAD+) activity Catalysis of the reaction: glutarate semialdehyde + NAD+ + H2O = glutarate + NADH. tmpzr1t_l9r_go_relaxed.owl glutarate semialdehyde dehydrogenase (NAD+) activity|glutarate-semialdehyde:NAD+ oxidoreductase activity EC:1.2.1.20|MetaCyc:GLUTARATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|RHEA:12064 molecular_function owl:Class GO:0014876 biolink:NamedThing response to injury involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a injury. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl response to injury involved in regulation of muscle plasticity biological_process owl:Class GO:0009611 biolink:NamedThing response to wounding Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. tmpzr1t_l9r_go_relaxed.owl physiological response to wounding GO:0002245 biological_process owl:Class GO:0045861 biolink:NamedThing negative regulation of proteolysis Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. tmpzr1t_l9r_go_relaxed.owl downregulation of proteolysis|inhibition of proteolysis|down regulation of proteolysis|down-regulation of proteolysis|negative regulation of peptidolysis biological_process owl:Class GO:0035353 biolink:NamedThing nicotinamide mononucleotide transmembrane transport The process in which nicotinamide mononucleotide is transported across a membrane. Nicotinamide mononucleotide is a ribonucleotide in which the nitrogenous base, nicotinamide, is in beta-n-glycosidic linkage with the c-1 position of d-ribose. It is a constituent of NAD and NADP. tmpzr1t_l9r_go_relaxed.owl nicotinamide mononucleotide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:46:55Z biological_process owl:Class GO:0015890 biolink:NamedThing nicotinamide mononucleotide transport The directed movement of nicotinamide mononucleotide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nicotinamide mononucleotide is a ribonucleotide in which the nitrogenous base, nicotinamide, is in beta-n-glycosidic linkage with the c-1 position of D-ribose. It is a constituent of NAD and NADP. tmpzr1t_l9r_go_relaxed.owl nicotinamide ribonucleotide transport biological_process owl:Class GO:1905821 biolink:NamedThing positive regulation of chromosome condensation Any process that activates or increases the frequency, rate or extent of chromosome condensation. tmpzr1t_l9r_go_relaxed.owl up regulation of nuclear chromosome condensation|up regulation of eukaryotic chromosome condensation|up-regulation of chromosome condensation|up-regulation of eukaryotic chromosome condensation|positive regulation of nuclear chromosome condensation|upregulation of chromosome condensation|activation of eukaryotic chromosome condensation|up regulation of chromosome condensation|positive regulation of eukaryotic chromosome condensation|up-regulation of nuclear chromosome condensation|activation of chromosome condensation|activation of nuclear chromosome condensation|upregulation of eukaryotic chromosome condensation|upregulation of nuclear chromosome condensation bhm 2017-01-13T14:13:44Z biological_process owl:Class GO:1900937 biolink:NamedThing positive regulation of nonadec-1-ene biosynthetic process Any process that activates or increases the frequency, rate or extent of nonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of nonadec-1-ene formation|positive regulation of nonadec-1-ene biosynthesis|upregulation of nonadec-1-ene synthesis|activation of nonadec-1-ene biosynthetic process|activation of nonadec-1-ene formation|up regulation of nonadec-1-ene formation|up-regulation of nonadec-1-ene synthesis|upregulation of nonadec-1-ene anabolism|upregulation of nonadec-1-ene biosynthetic process|up regulation of nonadec-1-ene biosynthetic process|positive regulation of nonadec-1-ene synthesis|up-regulation of nonadec-1-ene formation|up regulation of nonadec-1-ene synthesis|up-regulation of nonadec-1-ene biosynthesis|positive regulation of nonadec-1-ene formation|up-regulation of nonadec-1-ene biosynthetic process|up-regulation of nonadec-1-ene anabolism|up regulation of nonadec-1-ene biosynthesis|up regulation of nonadec-1-ene anabolism|upregulation of nonadec-1-ene biosynthesis|activation of nonadec-1-ene anabolism|activation of nonadec-1-ene biosynthesis|positive regulation of nonadec-1-ene anabolism|activation of nonadec-1-ene synthesis tt 2012-06-14T03:14:04Z biological_process owl:Class GO:0014003 biolink:NamedThing oligodendrocyte development The process aimed at the progression of an oligodendrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An oligodendrocyte is a type of glial cell involved in myelinating the axons in the central nervous system. tmpzr1t_l9r_go_relaxed.owl oligodendrocyte cell development biological_process owl:Class GO:0021782 biolink:NamedThing glial cell development The process aimed at the progression of a glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106219 biolink:NamedThing zinc ion sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of zinc. tmpzr1t_l9r_go_relaxed.owl hjd 2019-08-15T16:45:43Z molecular_function owl:Class GO:1904343 biolink:NamedThing positive regulation of colon smooth muscle contraction Any process that activates or increases the frequency, rate or extent of colon smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of colon smooth muscle contraction|up regulation of colon smooth muscle contraction|upregulation of colon smooth muscle contraction|activation of colon smooth muscle contraction sl 2015-06-11T21:17:11Z biological_process owl:Class GO:1901656 biolink:NamedThing glycoside transport The directed movement of a glycoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-20T11:59:16Z biological_process owl:Class GO:0047622 biolink:NamedThing adenosine nucleosidase activity Catalysis of the reaction: adenosine + H2O = D-ribose + adenine. tmpzr1t_l9r_go_relaxed.owl N-ribosyladenine ribohydrolase activity|adenosinase activity|ANase activity|adenosine hydrolase activity|adenosine ribohydrolase activity RHEA:18669|MetaCyc:ADENOSINE-NUCLEOSIDASE-RXN|EC:3.2.2.7 molecular_function owl:Class GO:0008477 biolink:NamedThing purine nucleosidase activity Catalysis of the reaction: a N-D-ribosylpurine + H2O = a purine + D-ribose. tmpzr1t_l9r_go_relaxed.owl nucleosidase activity|IAG-NH activity|purine beta-ribosidase activity|purine ribonucleosidase activity|nucleoside hydrolase activity|ribonucleoside hydrolase activity|purine nucleoside hydrolase activity|nucleosidase g activity|purine nucleosidase reaction|N-ribosyl purine ribohydrolase activity|purine-specific nucleoside N-ribohydrolase activity|N-D-ribosylpurine ribohydrolase activity|inosine-adenosine-guanosine preferring nucleoside hydrolase activity|purine-nucleoside ribohydrolase activity|IAG-nucleoside hydrolase activity MetaCyc:PURINE-NUCLEOSIDASE-RXN|RHEA:23344|EC:3.2.2.1 molecular_function owl:Class GO:0010990 biolink:NamedThing regulation of SMAD protein complex assembly Any process that modulates the rate, frequency, or extent of SMAD protein complex assembly. SMAD protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-03T11:28:05Z biological_process owl:Class GO:0016853 biolink:NamedThing isomerase activity Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. tmpzr1t_l9r_go_relaxed.owl other isomerase activity Reactome:R-HSA-6787623|EC:5.-.-.- molecular_function owl:Class GO:0102791 biolink:NamedThing sulfuretin synthase activity Catalysis of the reaction: butein 4'-beta-D-glucoside + O2 + 2 H+ = sulfuretin 6-glucoside + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8008|EC:1.21.3.6 molecular_function owl:Class GO:0015209 biolink:NamedThing cytosine transmembrane transporter activity Enables the transfer of cytosine, 4-amino-2-hydroxypyrimidine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005350 biolink:NamedThing pyrimidine nucleobase transmembrane transporter activity Enables the transfer of pyrimidine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl pyrimidine transmembrane transporter activity|pyrimidine base transmembrane transporter activity molecular_function owl:Class GO:0070884 biolink:NamedThing regulation of calcineurin-NFAT signaling cascade Any process that modulates the frequency, rate or extent of the calcineurin-NFAT signaling cascade. tmpzr1t_l9r_go_relaxed.owl regulation of calcineurin-NFAT signalling cascade|regulation of calcineurin-NFAT signaling pathway|regulation of NFAT protein import into nucleus|NFAT protein import into nucleus mah 2009-08-26T03:25:30Z GO:0051531|GO:0051532 biological_process owl:Class GO:0099638 biolink:NamedThing endosome to plasma membrane protein transport The directed movement of proteins from the endosome to the plasma membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010734 biolink:NamedThing negative regulation of protein glutathionylation Any process that decreases the rate, frequency, or extent of protein glutathionylation. Protein glutathionylation is the protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein amino acid glutathionylation biological_process owl:Class GO:0045844 biolink:NamedThing positive regulation of striated muscle tissue development Any process that activates or increases the frequency, rate or extent of striated muscle development. tmpzr1t_l9r_go_relaxed.owl up-regulation of striated muscle development|up regulation of striated muscle development|upregulation of striated muscle development|stimulation of striated muscle development|activation of striated muscle development biological_process owl:Class GO:0016202 biolink:NamedThing regulation of striated muscle tissue development Any process that modulates the frequency, rate or extent of striated muscle development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903271 biolink:NamedThing negative regulation of cytoplasmic translational elongation through polyproline stretches Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translational elongation through polyproline stretches. tmpzr1t_l9r_go_relaxed.owl down regulation of cytoplasmic translational elongation through polyproline stretches|downregulation of cytoplasmic translational elongation through polyproline stretches|down-regulation of cytoplasmic translational elongation through polyproline stretches|inhibition of cytoplasmic translational elongation through polyproline stretches mcc 2014-08-08T14:54:08Z biological_process owl:Class GO:1903270 biolink:NamedThing regulation of cytoplasmic translational elongation through polyproline stretches Any process that modulates the frequency, rate or extent of cytoplasmic translational elongation through polyproline stretches. tmpzr1t_l9r_go_relaxed.owl mcc 2014-08-08T14:53:59Z biological_process owl:Class GO:0021680 biolink:NamedThing cerebellar Purkinje cell layer development The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002638 biolink:NamedThing negative regulation of immunoglobulin production Any process that stops, prevents, or reduces the frequency, rate, or extent of immunoglobulin production. tmpzr1t_l9r_go_relaxed.owl down-regulation of immunoglobulin production|negative regulation of immunoglobulin biosynthetic process|negative regulation of immunoglobulin secretion|downregulation of immunoglobulin production|down regulation of immunoglobulin production|inhibition of immunoglobulin production GO:0051025|GO:0002641 biological_process owl:Class GO:1900244 biolink:NamedThing positive regulation of synaptic vesicle endocytosis Any process that activates or increases the frequency, rate or extent of synaptic vesicle endocytosis. tmpzr1t_l9r_go_relaxed.owl upregulation of synaptic vesicle retrieval|up-regulation of synaptic vesicle retrieval|up regulation of synaptic vesicle retrieval|upregulation of synaptic vesicle endocytosis|positive regulation of synaptic vesicle retrieval|activation of synaptic vesicle endocytosis|up-regulation of synaptic vesicle endocytosis|up regulation of synaptic vesicle endocytosis|activation of synaptic vesicle retrieval rl 2012-03-28T01:40:44Z biological_process owl:Class GO:0050745 biolink:NamedThing peptide cross-linking via L-cysteinyl-5-imidazolinone glycine The formation of a protein active site cross-link from the alpha-carboxyl carbon of residue N, a cysteine, to the alpha-amino nitrogen of residue N+2, a glycine, coupled with the formation of a double bond to the alpha-amino nitrogen of residue N+1 which loses one hydrogen, and the loss of a molecule of water. tmpzr1t_l9r_go_relaxed.owl RESID:AA0188 biological_process owl:Class GO:0004016 biolink:NamedThing adenylate cyclase activity Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl adenylylcyclase activity|3',5'-cyclic AMP synthetase activity|ATP diphosphate-lyase (cyclizing) activity|ATP diphosphate-lyase (cyclizing; 3',5'-cyclic-AMP-forming) activity|adenyl cyclase activity|cAMP generating peptide activity|adenylyl cyclase activity|ATP pyrophosphate-lyase activity Reactome:R-HSA-5610727|Reactome:R-HSA-5211224|RHEA:15389|MetaCyc:ADENYLATECYC-RXN|Reactome:R-HSA-392129|Reactome:R-HSA-164377|EC:4.6.1.1|Reactome:R-HSA-170676|Reactome:R-HSA-381607 molecular_function owl:Class GO:1904624 biolink:NamedThing regulation of glycine secretion, neurotransmission Any process that modulates the frequency, rate or extent of glycine secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl hjd 2015-08-27T20:03:38Z biological_process owl:Class GO:0051955 biolink:NamedThing regulation of amino acid transport Any process that modulates the frequency, rate or extent of the directed movement of amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010981 biolink:NamedThing regulation of cell wall macromolecule metabolic process Any process that modulates the rate, frequency or extent of cell wall macromolecule metabolism. Cell wall macromolecule metabolic processes are the chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T11:55:35Z biological_process owl:Class GO:0071285 biolink:NamedThing cellular response to lithium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:04:13Z biological_process owl:Class GO:0044085 biolink:NamedThing cellular component biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. tmpzr1t_l9r_go_relaxed.owl cellular component biogenesis at cellular level GO:0071843 biological_process owl:Class GO:0071522 biolink:NamedThing ureidoglycine aminohydrolase activity Catalysis of the reaction: ureidoglycine + H2O = S-ureidoglycolate + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.3.26|RHEA:25241|MetaCyc:URUR-RXN mah 2010-01-07T01:43:58Z molecular_function owl:Class GO:0035763 biolink:NamedThing dorsal motor nucleus of vagus nerve structural organization The process that contributes to the act of creating the structural organization of the dorsal motor nucleus of the vagus nerve. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl dorsal motor nucleus of vagus nerve structural organisation bf 2011-03-29T02:47:56Z biological_process owl:Class GO:0099104 biolink:NamedThing potassium channel activator activity Binds to and increases the activity of a potassium channel, resulting in its opening. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140677 biolink:NamedThing molecular function activator activity A molecular function regulator that activates or increases the activity of its target via non-covalent binding that does not result in covalent modification to the target. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21782 pg 2021-07-07T07:24:16Z molecular_function owl:Class GO:0099161 biolink:NamedThing regulation of presynaptic dense core granule exocytosis Any process that modulates the frequency, rate or extent of presynaptic dense core granule exocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of presynaptic dense core vesicle exocytosis dos 2017-09-10T10:59:08Z biological_process owl:Class GO:0046153 biolink:NamedThing ommochrome catabolic process The chemical reactions and pathways resulting in the breakdown of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye. tmpzr1t_l9r_go_relaxed.owl ommochrome catabolism|ommochrome degradation|ommochrome breakdown biological_process owl:Class GO:0097631 biolink:NamedThing integral component of omegasome membrane The component of the omegasome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl omegasome integral membrane protein|integral to omegasome membrane cellular_component owl:Class GO:0047312 biolink:NamedThing L-phenylalanine:pyruvate aminotransferase activity Catalysis of the reaction: pyruvate + L-phenylalanine = phenylpyruvate + L-alanine. tmpzr1t_l9r_go_relaxed.owl phenylalanine (histidine) aminotransferase activity|phenylalanine(histidine):pyruvate aminotransferase activity|phenylalanine(histidine) transaminase activity|histidine aminotransferase activity|L-phenylalanine:pyruvate transaminase activity|phenylalanine(histidine) aminotransferase activity|L-phenylalanine(L-histidine):pyruvate aminotransferase activity|L-histidine:pyruvate aminotransferase activity|histidine:pyruvate aminotransferase activity Reactome:R-HSA-893593|RHEA:13053|EC:2.6.1.58|MetaCyc:2.6.1.58-RXN|KEGG_REACTION:R00692 molecular_function owl:Class GO:0031227 biolink:NamedThing intrinsic component of endoplasmic reticulum membrane The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to endoplasmic reticulum membrane cellular_component owl:Class GO:0043999 biolink:NamedThing histone acetyltransferase activity (H2A-K5 specific) Catalysis of the reaction: acetyl-CoA + histone H2A L-lysine (position 5) = CoA + histone H2A N6-acetyl-L-lysine (position 5). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H2A-K5 specific) molecular_function owl:Class GO:0043998 biolink:NamedThing H2A histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone H2A L-lysine = CoA + histone H2A N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl H2A histone lysine N-acetyltransferase activity molecular_function owl:Class GO:0016642 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a disulfide group. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH2 group of donors, disulphide as acceptor EC:1.4.4.- molecular_function owl:Class GO:0016638 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors EC:1.4.-.- molecular_function owl:Class GO:2000601 biolink:NamedThing positive regulation of Arp2/3 complex-mediated actin nucleation Any process that activates or increases the frequency, rate or extent of Arp2/3 complex-mediated actin nucleation. tmpzr1t_l9r_go_relaxed.owl positive regulation of branched actin filament nucleation|positive regulation of actin filament branch nucleation bf 2011-04-14T12:35:44Z biological_process owl:Class GO:0021931 biolink:NamedThing rostral hindbrain neuronal precursor cell proliferation The multiplication or reproduction of neuroblasts that will give rise to neurons of the lateral pontine nucleus and the locus ceruleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021924 biolink:NamedThing cell proliferation in external granule layer The multiplication or reproduction of neuroblasts resulting in the expansion of a cell population in the external granule layer of the hindbrain. The external granule layer is the layer that originates from the rostral half of the rhombic lip in the first rhombomere. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060743 biolink:NamedThing epithelial cell maturation involved in prostate gland development The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell of the prostate gland to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface. tmpzr1t_l9r_go_relaxed.owl prostate gland epithelial cell development dph 2009-06-16T09:34:42Z biological_process owl:Class GO:0002070 biolink:NamedThing epithelial cell maturation The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018282 biolink:NamedThing metal incorporation into metallo-sulfur cluster The formation of a cluster of several metal atoms, including iron, nickel, molybdenum, vanadium, or copper, with one or more bridging (mu-bond) sulfur atoms; amino acids residues in proteins that may ligate the metal sulfur cluster are cysteine, histidine, aspartate, glutamate, serine and cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl metal incorporation into metallo-sulphur cluster biological_process owl:Class GO:0061092 biolink:NamedThing positive regulation of phospholipid translocation Any process that increases the frequency, rate or extent of the translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:54:22Z biological_process owl:Class GO:2001140 biolink:NamedThing positive regulation of phospholipid transport Any process that activates or increases the frequency, rate or extent of phospholipid transport. tmpzr1t_l9r_go_relaxed.owl kmv 2011-10-14T06:16:14Z biological_process owl:Class GO:0048819 biolink:NamedThing regulation of hair follicle maturation Any process that modulates the frequency, rate or extent of hair follicle maturation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043011 biolink:NamedThing myeloid dendritic cell differentiation The process in which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Dendritic_cell biological_process owl:Class GO:0097028 biolink:NamedThing dendritic cell differentiation The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. tmpzr1t_l9r_go_relaxed.owl Note that immunologists typically use the word 'maturation' to refer to dendritic cells undergoing the process that GO describes as 'cell differentiation'. pr 2011-04-01T10:08:42Z biological_process owl:Class GO:0001566 biolink:NamedThing non-kinase phorbol ester receptor activity Combining with a phorbol ester and transmitting the signal by a mechanism independent of kinase activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001565 biolink:NamedThing phorbol ester receptor activity Combining with a phorbol ester and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019687 biolink:NamedThing pyruvate biosynthetic process from acetate The chemical reactions and pathways resulting in the formation of pyruvate from other compounds, including acetate. tmpzr1t_l9r_go_relaxed.owl pyruvate synthesis from acetate|pyruvate formation from acetate|pyruvate anabolism from acetate biological_process owl:Class GO:0042866 biolink:NamedThing pyruvate biosynthetic process The chemical reactions and pathways resulting in the formation of pyruvate, 2-oxopropanoate. tmpzr1t_l9r_go_relaxed.owl pyruvate biosynthesis|pyruvate synthesis|pyruvate anabolism|pyruvate formation biological_process owl:Class GO:1902254 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl inhibition of signal transduction by p53 class mediator resulting in induction of apoptosis|down regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|inhibition of intrinsic apoptotic signaling pathway by p53 class mediator|negative regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|down-regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|downregulation of intrinsic apoptotic signaling pathway by p53 class mediator|down-regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|down regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|down-regulation of intrinsic apoptotic signaling pathway by p53 class mediator|inhibition of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|down regulation of intrinsic apoptotic signaling pathway by p53 class mediator|downregulation of signal transduction by p53 class mediator resulting in induction of apoptosis|downregulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator rl 2013-06-20T19:41:43Z biological_process owl:Class GO:1901797 biolink:NamedThing negative regulation of signal transduction by p53 class mediator Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl downregulation of signal transduction by p53 class mediator|down regulation of signal transduction by p53 class mediator|inhibition of signal transduction by p53 class mediator|down-regulation of signal transduction by p53 class mediator hjd 2013-01-18T21:51:44Z biological_process owl:Class GO:0032742 biolink:NamedThing positive regulation of interleukin-19 production Any process that activates or increases the frequency, rate, or extent of interleukin-19 production. tmpzr1t_l9r_go_relaxed.owl upregulation of interleukin-19 production|activation of interleukin-19 production|up regulation of interleukin-19 production|stimulation of interleukin-19 production|positive regulation of interleukin-19 biosynthetic process|up-regulation of interleukin-19 production|positive regulation of IL-19 production GO:0045386 biological_process owl:Class GO:0061988 biolink:NamedThing karyosome formation The chromosome organization process in which meiotic chromosomes in the germ cell nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T21:24:08Z biological_process owl:Class GO:0042381 biolink:NamedThing hemolymph coagulation Any process in which factors in the hemolymph (the invertebrate equivalent of vertebrate blood and lymph) precipitate into insoluble clots in order to prevent loss of body fluid, and at the same time prevent the movement of microbes. Hemolymph coagulation is also part of the invertebrate humoral immune response. tmpzr1t_l9r_go_relaxed.owl hemolymph clotting biological_process owl:Class GO:0044075 biolink:NamedThing modulation by symbiont of host vacuole organization Any process in which a symbiont organism modulates the frequency, rate or extent of vacuole organization in its host organism. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host vacuole organisation|modulation by symbiont of host vacuole biogenesis|regulation by symbiont of host vacuole organization|modulation of host vacuole organization by symbiont biological_process owl:Class GO:0044088 biolink:NamedThing regulation of vacuole organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole. tmpzr1t_l9r_go_relaxed.owl regulation of vacuole biogenesis|regulation of vacuole organisation biological_process owl:Class GO:2000138 biolink:NamedThing positive regulation of cell proliferation involved in heart morphogenesis Any process that activates or increases the frequency, rate or extent of cell proliferation involved in heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T12:43:57Z biological_process owl:Class GO:0050961 biolink:NamedThing detection of temperature stimulus involved in sensory perception The series of events in which a temperature stimulus is received and converted into a molecular signal as part of sensory perception. tmpzr1t_l9r_go_relaxed.owl sensory transduction of temperature stimulus|sensory perception, sensory transduction of thermal stimulus|sensory perception, sensory detection of thermal stimulus|sensory detection of heat stimulus during sensory perception|sensory transduction of thermal stimulus during sensory perception|sensory transduction of temperature stimulus during sensory perception|sensory detection of temperature stimulus|sensory detection of thermal stimulus during sensory perception|sensory perception, sensory transduction of temperature stimulus|sensory perception, sensory detection of temperature stimulus|sensory transduction of heat stimulus during sensory perception|sensory perception, sensory detection of heat stimulus|sensory detection of temperature stimulus during sensory perception|sensory perception, sensory transduction of heat stimulus biological_process owl:Class GO:0045936 biolink:NamedThing negative regulation of phosphate metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. tmpzr1t_l9r_go_relaxed.owl down regulation of phosphate metabolic process|inhibition of phosphate metabolic process|negative regulation of phosphate metabolism|downregulation of phosphate metabolic process|down-regulation of phosphate metabolic process biological_process owl:Class GO:0019220 biolink:NamedThing regulation of phosphate metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. tmpzr1t_l9r_go_relaxed.owl regulation of phosphate metabolism biological_process owl:Class GO:0033478 biolink:NamedThing UDP-rhamnose metabolic process The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-rhamnose metabolism MetaCyc:PWY-3261 biological_process owl:Class GO:0072725 biolink:NamedThing cellular response to 4-nitroquinoline N-oxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4-nitroquinoline N-oxide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-05-31T11:00:42Z biological_process owl:Class GO:0045550 biolink:NamedThing geranylgeranyl reductase activity Catalysis of the formation of phytyl group from the stepwise reduction of a geranylgeranyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036197 biolink:NamedThing zymosterol biosynthetic process The chemical reactions and pathways resulting in the formation of zymosterol, (5alpha-cholesta-8,24-dien-3beta-ol). tmpzr1t_l9r_go_relaxed.owl zymosterol formation|zymosterol synthesis|zymosterol biosynthesis|zymosterol anabolism UniPathway:UPA00770|MetaCyc:PWY-6074 bf 2012-04-20T10:28:46Z biological_process owl:Class GO:0016126 biolink:NamedThing sterol biosynthetic process The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol synthesis|sterol formation|sterol anabolism|sterol biosynthesis MetaCyc:PWY-2541 biological_process owl:Class GO:0071602 biolink:NamedThing phytosphingosine biosynthetic process The chemical reactions and pathways resulting in the formation of phytosphingosine, (2S,3S,4R)-2-aminooctadecane-1,3,4-triol. tmpzr1t_l9r_go_relaxed.owl phytosphingosine formation|phytosphingosine biosynthesis|phytosphingosine anabolism|phytosphingosine synthesis mah 2010-02-04T05:15:59Z biological_process owl:Class GO:0006671 biolink:NamedThing phytosphingosine metabolic process The chemical reactions and pathways involving phytosphingosine, (2S,3S,4R)-2-aminooctadecane-1,3,4-triol, a constituent of many plant sphingolipids. tmpzr1t_l9r_go_relaxed.owl phytosphingosine metabolism biological_process owl:Class GO:0031084 biolink:NamedThing BLOC-2 complex A protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules. The human complex contains the Hps3, Hps5, and Hps6 proteins; the mouse complex contains ru2 and ru. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031082 biolink:NamedThing BLOC complex Any of several protein complexes required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes, platelet dense granules, and other related organelles; acronym for biogenesis of lysosomal-related organelles complex. tmpzr1t_l9r_go_relaxed.owl BLOC-1 related complex cellular_component owl:Class GO:2000545 biolink:NamedThing negative regulation of endothelial cell chemotaxis to fibroblast growth factor Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T07:14:11Z biological_process owl:Class GO:0071262 biolink:NamedThing regulation of translational initiation in response to starvation Any process that modulates the frequency, rate or extent of translation initiation, as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl regulation of translational initiation in response to nutrient starvation mah 2009-12-08T05:31:05Z biological_process owl:Class GO:0043558 biolink:NamedThing regulation of translational initiation in response to stress Any process that modulates the frequency, rate or extent of translation initiation, as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl regulation of translation initiation in response to stress biological_process owl:Class GO:0032737 biolink:NamedThing positive regulation of interleukin-14 production Any process that activates or increases the frequency, rate, or extent of interleukin-14 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-14 production|activation of interleukin-14 production|up regulation of interleukin-14 production|upregulation of interleukin-14 production|up-regulation of interleukin-14 production|positive regulation of interleukin-14 biosynthetic process|positive regulation of IL-14 production GO:0045371 biological_process owl:Class GO:0006391 biolink:NamedThing transcription initiation from mitochondrial promoter A transcription initiation process that takes place at a promoter on the mitochondrial chromosome, and results in RNA synthesis by a mitochondrial RNA polymerase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000959 biolink:NamedThing mitochondrial RNA metabolic process The chemical reactions and pathways involving RNA transcribed from the mitochondrial genome and occurring in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005432 biolink:NamedThing calcium:sodium antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/calcium exchanger|sodium:calcium exchange|mitochondrial sodium/calcium ion exchange Reactome:R-HSA-8949688|Reactome:R-HSA-425661|Reactome:R-HSA-8949703|RHEA:29255 molecular_function owl:Class GO:0008664 biolink:NamedThing 2'-5'-RNA ligase activity Catalysis of the formation of a phosphodiester bond between the 2'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. tmpzr1t_l9r_go_relaxed.owl 2'-5' RNA ligase activity molecular_function owl:Class GO:0008452 biolink:NamedThing RNA ligase activity Catalysis of the formation of a phosphodiester bond between a hydroxyl group at the end of one RNA chain and the 5'-phosphate group at the end of another. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035983 biolink:NamedThing response to trichostatin A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichostatin A stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-23T01:48:01Z biological_process owl:Class GO:0048640 biolink:NamedThing negative regulation of developmental growth Any process that stops, prevents, or reduces the frequency, rate or extent of developmental growth. tmpzr1t_l9r_go_relaxed.owl inhibition of developmental growth|down regulation of developmental growth|down-regulation of developmental growth|downregulation of developmental growth biological_process owl:Class GO:0015916 biolink:NamedThing fatty-acyl-CoA transport The directed movement of fatty acyl coenzyme A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acyl coenzyme A is an acyl group linked to 3'-phosphoadenosine-(5')diphospho(4')pantatheine (coenzyme A). tmpzr1t_l9r_go_relaxed.owl fatty acyl-CoA transport|fatty acyl coenzyme A transport|fatty acyl CoA transport biological_process owl:Class GO:0015868 biolink:NamedThing purine ribonucleotide transport The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052838 biolink:NamedThing thiazole metabolic process The chemical reactions and pathways involving thiazole, a five-membered heterocyclic ring structure containing a sulfur in the 1-position and a nitrogen in the 3-position. tmpzr1t_l9r_go_relaxed.owl thiazole metabolism ai 2011-11-29T03:35:50Z biological_process owl:Class GO:0030256 biolink:NamedThing type I protein secretion system complex A complex of three secretory proteins that carry out secretion in the type I secretion system: an inner membrane transport ATPase (termed ABC protein for ATP-binding cassette), which provides the energy for protein secretion; an outer membrane protein, which is exported via the sec pathway; and a membrane fusion protein, which is anchored in the inner membrane and spans the periplasmic space. tmpzr1t_l9r_go_relaxed.owl ABC translocator complex cellular_component owl:Class GO:1901546 biolink:NamedThing regulation of synaptic vesicle lumen acidification Any process that modulates the frequency, rate or extent of synaptic vesicle lumen acidification. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic vesicle lumen proton loading|regulation of synaptic vesicle lumen pH reduction dsf 2012-10-26T16:09:24Z biological_process owl:Class GO:1903900 biolink:NamedThing regulation of viral life cycle Any process that modulates the frequency, rate or extent of viral life cycle. tmpzr1t_l9r_go_relaxed.owl regulation of viral replication|regulation of viral infectious cycle|regulation of viral assembly, maturation, egress, and release|regulation of lytic viral life cycle pga 2015-02-09T10:22:07Z biological_process owl:Class GO:1904033 biolink:NamedThing negative regulation of t-SNARE clustering Any process that stops, prevents or reduces the frequency, rate or extent of t-SNARE clustering. tmpzr1t_l9r_go_relaxed.owl down regulation of t-SNARE clustering|downregulation of t-SNARE clustering|inhibition of t-SNARE clustering|down-regulation of t-SNARE clustering sl 2015-03-13T21:21:44Z biological_process owl:Class GO:0051606 biolink:NamedThing detection of stimulus The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl stimulus detection|perception of stimulus|stimulus sensing biological_process owl:Class GO:0030931 biolink:NamedThing heterotetrameric ADPG pyrophosphorylase complex A protein complex composed of four different subunits that possesses ADPG pyrophosphorylase activity. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030929 biolink:NamedThing ADPG pyrophosphorylase complex Complex that possesses ADPG pyrophosphorylase activity. In all organisms where it has been found, the complex is a tetramer. In bacteria, it is a homotetramer. In plants, the complex is a heterotetramer composed small and large subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031554 biolink:NamedThing regulation of DNA-templated transcription, termination Any process that modulates the frequency, rate, extent, or location of DNA-templated transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. tmpzr1t_l9r_go_relaxed.owl transcription antiterminator activity|regulation of transcription termination, DNA-dependent|regulation of DNA-dependent transcription, termination|regulation of termination of DNA-dependent transcription biological_process owl:Class GO:0002289 biolink:NamedThing NK T cell proliferation involved in immune response The expansion of a NK T cell population by cell division as part of an immune response. tmpzr1t_l9r_go_relaxed.owl NK T lymphocyte proliferation during immune response|NK T-lymphocyte proliferation during immune response|NK T cell proliferation during immune response|natural killer T-cell proliferation during immune response|natural killer T lymphocyte proliferation during immune response|natural killer T-lymphocyte proliferation during immune response|NK T-cell proliferation during immune response biological_process owl:Class GO:0002288 biolink:NamedThing NK T cell activation involved in immune response The change in morphology and behavior of a mature or immature natural killer T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl NK T cell activation during immune response|natural killer T lymphocyte activation during immune response|NK T-cell activation during immune response|NK T-lymphocyte activation during immune response|natural killer T-cell activation during immune response|natural killer T-lymphocyte activation during immune response|NK T lymphocyte activation during immune response biological_process owl:Class GO:0042909 biolink:NamedThing acridine transport The directed movement of acridine (10-azaanthracene), a heterocyclic ring compound found in crude coal-tar anthracene, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902360 biolink:NamedThing conversion of ds siRNA to ss siRNA involved in gene silencing by small RNA Any conversion of ds siRNA to ss siRNA that is involved in gene silencing by small RNA. tmpzr1t_l9r_go_relaxed.owl conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in RNAi-like chromatin silencing|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in RNA interference-like chromatin silencing|conversion of ds siRNA to ss siRNA involved in small RNA-mediated heterochromatic silencing|conversion of ds siRNA to ss siRNA involved in RNA interference-like chromatin silencing|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in RNA-mediated transcriptional silencing|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in RNAi-directed chromatin silencing|conversion of ds siRNA to ss siRNA involved in RNAi-directed chromatin silencing|conversion of ds siRNA to ss siRNA involved in chromatin silencing by small RNA|conversion of ds siRNA to ss siRNA involved in RNA-mediated chromatin silencing|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in chromatin silencing by small RNA|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in small RNA-mediated heterochromatic silencing|conversion of ds siRNA to ss siRNA involved in RNAi-like chromatin silencing|conversion of ds siRNA to ss siRNA involved in RNA-mediated transcriptional silencing|conversion of double-stranded small interfering RNA to single-stranded small interfering RNA involved in RNA-mediated chromatin silencing https://github.com/geneontology/go-ontology/issues/22058 bf 2013-08-15T10:06:18Z biological_process owl:Class GO:0036404 biolink:NamedThing conversion of ds siRNA to ss siRNA The process in which double-stranded small interfering RNA (ds siRNA) molecules are converted to single-stranded small interfering RNA (ss siRNA). tmpzr1t_l9r_go_relaxed.owl conversion of double-stranded small interfering RNA to single-stranded small interfering RNA bf 2013-08-14T14:24:19Z biological_process owl:Class GO:0018213 biolink:NamedThing peptidyl-valine modification The modification of peptidyl-valine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010696 biolink:NamedThing positive regulation of mitotic spindle pole body separation Any process that increases the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of SPB separation biological_process owl:Class GO:0035339 biolink:NamedThing SPOTS complex A multiprotein complex at least composed of serine palmitoyltransferases and ORM proteins (known as ORMDL proteins in mammals and other higher vertebrates) that plays a key role in sphingolipid homeostasis. tmpzr1t_l9r_go_relaxed.owl serine palmitoyltransferase, Orm1/2, Tsc3 and Sac1 complex bf 2010-03-03T10:28:42Z cellular_component owl:Class GO:0017059 biolink:NamedThing serine C-palmitoyltransferase complex An enzyme complex that catalyzes the transfer of a palmitoyl on to serine, forming 3-dehydro-D-sphinganine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901508 biolink:NamedThing positive regulation of acylglycerol transport Any process that activates or increases the frequency, rate or extent of acylglycerol transport. tmpzr1t_l9r_go_relaxed.owl activation of acylglycerol transport|up regulation of acylglycerol transport|positive regulation of glyceride transport|up-regulation of glyceride transport|upregulation of acylglycerol transport|up-regulation of acylglycerol transport|up regulation of glyceride transport|activation of glyceride transport|upregulation of glyceride transport sart 2012-10-17T11:06:23Z biological_process owl:Class GO:1901506 biolink:NamedThing regulation of acylglycerol transport Any process that modulates the frequency, rate or extent of acylglycerol transport. tmpzr1t_l9r_go_relaxed.owl regulation of glyceride transport sart 2012-10-17T11:06:10Z biological_process owl:Class GO:0001832 biolink:NamedThing blastocyst growth An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, blastocoelic cavity ; EMAP:17', 'TS5, blastocoelic cavity ; EMAP:27' and 'TS6, blastocoelic cavity ; EMAP:36'. biological_process owl:Class GO:1904102 biolink:NamedThing cellular response to acadesine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acadesine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-03-30T22:36:32Z biological_process owl:Class GO:0140409 biolink:NamedThing positive regulation of mRNA alternative polyadenylation Any process that activates or increases the frequency, rate or extent of mRNA alternative polyadenylation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15389 pg 2019-12-13T12:48:31Z biological_process owl:Class GO:2001042 biolink:NamedThing negative regulation of septum digestion after cytokinesis Any process that stops, prevents or reduces the frequency, rate or extent of the process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytokinetic cell separation mcc 2011-08-30T05:16:55Z biological_process owl:Class GO:0001066 biolink:NamedThing plastid single subunit type RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single subunit type plastid RNA polymerase specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl krc 2010-10-19T03:54:57Z molecular_function owl:Class GO:0001064 biolink:NamedThing single subunit type RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl T3/T7 type RNA polymerase activity krc 2010-10-19T03:47:56Z molecular_function owl:Class GO:0098720 biolink:NamedThing succinate import across plasma membrane The directed movement of succinate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl succinate import into cell pr 2012-10-29T11:17:44Z GO:0097404 biological_process owl:Class GO:2000195 biolink:NamedThing negative regulation of female gonad development Any process that stops, prevents, or reduces the frequency, rate or extent of female gonad development. tmpzr1t_l9r_go_relaxed.owl negative regulation of ovary development|negative regulation of ovarian development yaf 2010-10-19T10:45:38Z biological_process owl:Class GO:2000194 biolink:NamedThing regulation of female gonad development Any process that modulates the frequency, rate or extent of female gonad development. tmpzr1t_l9r_go_relaxed.owl regulation of ovarian development|regulation of ovary development yaf 2010-10-19T10:45:34Z biological_process owl:Class GO:0019252 biolink:NamedThing starch biosynthetic process The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. tmpzr1t_l9r_go_relaxed.owl starch biosynthesis|starch anabolism|starch formation|starch synthesis MetaCyc:PWY-622 biological_process owl:Class GO:0005982 biolink:NamedThing starch metabolic process The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. tmpzr1t_l9r_go_relaxed.owl starch metabolism biological_process owl:Class GO:0015936 biolink:NamedThing coenzyme A metabolic process The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl CoA metabolism|coenzyme A metabolism GO:0006763 biological_process owl:Class GO:0034032 biolink:NamedThing purine nucleoside bisphosphate metabolic process The chemical reactions and pathways involving a purine nucleoside bisphosphate, a compound consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside bisphosphate metabolism biological_process owl:Class GO:0060639 biolink:NamedThing positive regulation of salivary gland formation by mesenchymal-epithelial signaling Any process that induces the formation of the salivary gland field by means of the secretion of a signal by a mesenchymal cell and its reception and interpretation by an epithelial cell resulting in it adopting the identity of a salivary gland bud cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of salivary gland formation by mesenchymal-epithelial signalling dph 2009-05-20T04:26:43Z biological_process owl:Class GO:0110110 biolink:NamedThing positive regulation of animal organ morphogenesis Any process that activates or increases the frequency, rate or extent of animal organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-05T14:10:14Z biological_process owl:Class GO:0001780 biolink:NamedThing neutrophil homeostasis The process of regulating the proliferation and elimination of neutrophils such that the total number of neutrophils within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term represents the return of neutrophil levels to stable numbers following an immune response as well as the proliferation and elimination of neutrophils required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0002262 biolink:NamedThing myeloid cell homeostasis The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032198 biolink:NamedThing MITE transposition Any process involved in the transposition of miniature inverted-repeat transposable elements (MITEs). tmpzr1t_l9r_go_relaxed.owl Class III transposition biological_process owl:Class GO:0003324 biolink:NamedThing pancreatic D cell development The process whose specific outcome is the progression of a pancreatic delta cell over time, from its formation to the mature structure. A delta cell is a cell of the pancreas that produces somatostatin. tmpzr1t_l9r_go_relaxed.owl pancreatic delta cell development dph 2009-11-02T08:23:26Z biological_process owl:Class GO:0004529 biolink:NamedThing exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004527 biolink:NamedThing exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. tmpzr1t_l9r_go_relaxed.owl exonuclease IX activity GO:0008857 molecular_function owl:Class GO:0032179 biolink:NamedThing germ tube The slender tubular outgrowth first produced by most spores in germination. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Germ_tube cellular_component owl:Class GO:0070601 biolink:NamedThing centromeric sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the centromeric region of the chromosome. tmpzr1t_l9r_go_relaxed.owl sister chromatid cohesion at centromere mah 2009-04-28T04:31:00Z biological_process owl:Class GO:0007062 biolink:NamedThing sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other. tmpzr1t_l9r_go_relaxed.owl coheson-mediated DNA tethering|sister chromatid alignment biological_process owl:Class GO:0032041 biolink:NamedThing NAD-dependent histone deacetylase activity (H3-K14 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 14) + H2O = histone H3 L-lysine (position 14) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 14 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046161 biolink:NamedThing heme a catabolic process The chemical reactions and pathways resulting in the breakdown of heme a, a derivative of heme found in cytochrome aa3. tmpzr1t_l9r_go_relaxed.owl haem a catabolic process|heme a catabolism|heme a breakdown|haem a catabolism|heme a degradation biological_process owl:Class GO:0019900 biolink:NamedThing kinase binding Binding to a kinase, any enzyme that catalyzes the transfer of a phosphate group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048201 biolink:NamedThing vesicle targeting, plasma membrane to endosome The process in which vesicles formed at the plasma membrane are directed to specific destinations in endosome membranes, mediated by molecules at the vesicle membrane and target membrane surfaces. tmpzr1t_l9r_go_relaxed.owl plasma membrane to endosome targeting biological_process owl:Class GO:0006903 biolink:NamedThing vesicle targeting The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050160 biolink:NamedThing orsellinate-depside hydrolase activity Catalysis of the reaction: H(2)O + orsellinate depside = 2 o-orsellinate + H(+). tmpzr1t_l9r_go_relaxed.owl lecanorate hydrolase activity MetaCyc:ORSELLINATE-DEPSIDE-HYDROLASE-RXN|KEGG_REACTION:R00054|RHEA:19549|EC:3.1.1.40 molecular_function owl:Class GO:0140043 biolink:NamedThing lipid droplet localization to prospore membrane leading edge Any process in which a lipid droplet is transported to, or maintained to the prospore membrane leading edge. tmpzr1t_l9r_go_relaxed.owl adiposome localization to FSM membrane leading edge|lipid body localization to forespore membrane leading edge|lipid body localization to ascospore-type prospore membrane leading edge|lipid particle localization to FSM membrane leading edge|adiposome localization to forespore membrane leading edge|lipid body localization to FSM membrane leading edge|lipid particle localization to forespore membrane leading edge|adiposome localization to ascospore-type prospore membrane leading edge|lipid particle localization to ascospore-type prospore membrane leading edge pg 2017-06-19T09:20:13Z biological_process owl:Class GO:0010876 biolink:NamedThing lipid localization Any process in which a lipid is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl lipid localisation biological_process owl:Class GO:1901534 biolink:NamedThing positive regulation of hematopoietic progenitor cell differentiation Any process that activates or increases the frequency, rate or extent of hematopoietic progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of haematopoietic progenitor cell differentiation|up-regulation of haemopoietic progenitor cell differentiation|upregulation of hematopoietic progenitor cell differentiation|up regulation of hematopoietic progenitor cell differentiation|activation of hematopoietic progenitor cell differentiation|upregulation of hemopoietic progenitor cell differentiation|up-regulation of hematopoietic progenitor cell differentiation|up-regulation of haematopoietic progenitor cell differentiation|up regulation of haemopoietic progenitor cell differentiation|activation of haematopoietic progenitor cell differentiation|positive regulation of hemopoietic progenitor cell differentiation|upregulation of haematopoietic progenitor cell differentiation|activation of haemopoietic progenitor cell differentiation|up regulation of hemopoietic progenitor cell differentiation|upregulation of haemopoietic progenitor cell differentiation|up-regulation of hemopoietic progenitor cell differentiation|positive regulation of haemopoietic progenitor cell differentiation|up regulation of haematopoietic progenitor cell differentiation|activation of hemopoietic progenitor cell differentiation vk 2012-10-24T11:23:14Z biological_process owl:Class GO:0002285 biolink:NamedThing lymphocyte activation involved in immune response A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl lymphocyte activation during immune response biological_process owl:Class GO:0046649 biolink:NamedThing lymphocyte activation A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051357 biolink:NamedThing peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one The formation of a 2-keto-5-iminopiperazine protein chromophore cross-link from the alpha-amino nitrogen of residue n, a methionine, to the alpha-carboxyl carbon of residue n+1, a tyrosine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+2. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. tmpzr1t_l9r_go_relaxed.owl biosynthetic process of protein-protein cross-link via L-methionyl-L-tyrosyl-2-keto-5-iminopiperazine|biosynthesis of protein-protein cross-link via L-methionyl-L-tyrosyl-2-keto-5-iminopiperazine RESID:AA0377 Note that this predicted modification is now thought not to exist. See the biological process term 'peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine ; GO:0051359'. biological_process owl:Class GO:0072173 biolink:NamedThing metanephric tubule morphogenesis The process in which the anatomical structures of a metanephric tubule are generated and organized from an epithelium. A metanephric tubule is an epithelial tube that is part of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:06:42Z biological_process owl:Class GO:0098640 biolink:NamedThing integrin binding involved in cell-matrix adhesion Any integrin binding that occurs as part of the process of cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021892 biolink:NamedThing cerebral cortex GABAergic interneuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a GABAergic interneuron residing in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071404 biolink:NamedThing cellular response to low-density lipoprotein particle stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low-density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl response to low-density lipoprotein particle|response to low density lipoprotein particle|response to low-density lipoprotein particle stimulus mah 2009-12-14T02:51:57Z GO:0055098 biological_process owl:Class GO:0071402 biolink:NamedThing cellular response to lipoprotein particle stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T02:48:51Z biological_process owl:Class GO:0071864 biolink:NamedThing positive regulation of cell proliferation in bone marrow A process that activates or increases the frequency, rate or extent of cell proliferation in the bone marrow. tmpzr1t_l9r_go_relaxed.owl positive regulation of bone marrow cell proliferation|up-regulation of cell proliferation in bone marrow|upregulation of cell proliferation in bone marrow|up regulation of cell proliferation in bone marrow|stimulation of cell proliferation in bone marrow|activation of cell proliferation in bone marrow mah 2010-09-13T02:12:36Z biological_process owl:Class GO:0071863 biolink:NamedThing regulation of cell proliferation in bone marrow A process that modulates the frequency, rate or extent of cell proliferation in the bone marrow. tmpzr1t_l9r_go_relaxed.owl regulation of bone marrow cell proliferation mah 2010-09-13T02:11:08Z biological_process owl:Class GO:1990484 biolink:NamedThing aerobic lactate catabolic process The chemical reactions and pathways resulting in the breakdown of lactate (2-hydroxypropanoic acid) in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic lactic acid catabolic process tt 2014-09-20T05:42:51Z biological_process owl:Class GO:0060542 biolink:NamedThing regulation of strand invasion Any process that modulates the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T01:28:41Z biological_process owl:Class GO:0019476 biolink:NamedThing D-lysine catabolic process The chemical reactions and pathways resulting in the breakdown of D-lysine, the D-enantiomer of lysine; i.e. (2R)-2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl D-lysine degradation|D-lysine catabolism|D-lysine breakdown biological_process owl:Class GO:0001812 biolink:NamedThing positive regulation of type I hypersensitivity Any process that activates or increases the frequency, rate or extent of type I hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl activation of type I hypersensitivity|up-regulation of type I hypersensitivity|upregulation of type I hypersensitivity|stimulation of type I hypersensitivity|up regulation of type I hypersensitivity biological_process owl:Class GO:0060665 biolink:NamedThing regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling Any process that modulates the rate, frequency, or extent of branching involved in salivary gland morphogenesis as a result of signals being generated by the mesenchyme and received and interpreted by the salivary gland epithelium. tmpzr1t_l9r_go_relaxed.owl regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signalling dph 2009-06-01T08:42:36Z biological_process owl:Class GO:0032746 biolink:NamedThing positive regulation of interleukin-22 production Any process that activates or increases the frequency, rate, or extent of interleukin-22 production. tmpzr1t_l9r_go_relaxed.owl activation of interleukin-22 production|positive regulation of interleukin-22 biosynthetic process|positive regulation of IL-22 production|up regulation of interleukin-22 production|upregulation of interleukin-22 production|stimulation of interleukin-22 production|up-regulation of interleukin-22 production GO:0045395 biological_process owl:Class GO:0032666 biolink:NamedThing regulation of interleukin-22 production Any process that modulates the frequency, rate, or extent of interleukin-22 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-22 biosynthetic process|regulation of IL-22 production GO:0045393 biological_process owl:Class GO:0042306 biolink:NamedThing regulation of protein import into nucleus Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of protein-nucleus import|regulation of protein transport from cytoplasm to nucleus|regulation of protein import into cell nucleus biological_process owl:Class GO:1902057 biolink:NamedThing (25S)-Delta(4)-dafachronate metabolic process The chemical reactions and pathways involving (25S)-Delta(4)-dafachronate. tmpzr1t_l9r_go_relaxed.owl (25S)-Delta(4)-dafachronate metabolism ab 2013-04-13T09:22:54Z biological_process owl:Class GO:0007107 biolink:NamedThing membrane addition at site of cytokinesis Any process involved in the net addition of membrane at the site of cytokinesis; includes vesicle recruitment and fusion, local lipid synthesis and insertion. tmpzr1t_l9r_go_relaxed.owl cytokinesis, membrane recruitment/generation biological_process owl:Class GO:1904699 biolink:NamedThing positive regulation of acinar cell proliferation Any process that activates or increases the frequency, rate or extent of acinar cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of acinous cell proliferation|up regulation of acinous cell proliferation|up regulation of acinar cell proliferation|up regulation of acinic cell proliferation|upregulation of acinar cell proliferation|up-regulation of acinar cell proliferation|activation of acinous cell proliferation|up-regulation of acinic cell proliferation|activation of acinar cell proliferation|positive regulation of acinic cell proliferation|upregulation of acinous cell proliferation|positive regulation of acinous cell proliferation|activation of acinic cell proliferation|upregulation of acinic cell proliferation sl 2015-09-30T15:20:03Z biological_process owl:Class GO:0035348 biolink:NamedThing acetyl-CoA transmembrane transport The process in which acetyl-CoA is transported across a membrane. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:42:23Z biological_process owl:Class GO:0015876 biolink:NamedThing acetyl-CoA transport The directed movement of acetyl-CoA into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903103 biolink:NamedThing potassium:proton antiporter complex A protein complex which is capable of potassium:proton antiporter activity. tmpzr1t_l9r_go_relaxed.owl An example of this is kefC in E. coli (P03819) in PMID:21041667 (inferred from direct assay). bhm 2014-06-04T20:51:33Z cellular_component owl:Class GO:2000918 biolink:NamedThing regulation of glucuronoarabinoxylan catabolic process Any process that modulates the frequency, rate or extent of glucuronoarabinoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glucuronoarabinoxylan catabolism tt 2011-08-01T12:36:47Z biological_process owl:Class GO:2000915 biolink:NamedThing regulation of glucuronoxylan catabolic process Any process that modulates the frequency, rate or extent of glucuronoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glucuronoxylan catabolism tt 2011-07-29T07:54:35Z biological_process owl:Class GO:1901927 biolink:NamedThing cadinene catabolic process The chemical reactions and pathways resulting in the breakdown of cadinene. tmpzr1t_l9r_go_relaxed.owl cadinene degradation|cadinene breakdown|cadinene catabolism ms 2013-02-18T14:54:29Z biological_process owl:Class GO:1903073 biolink:NamedThing negative regulation of death-inducing signaling complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of death-inducing signaling complex assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|down-regulation of DISC formation|down-regulation of death-inducing signaling complex assembly|down regulation of death-inducing signaling complex formation|inhibition of DISC formation|downregulation of DD-mediated complex assembly|down-regulation of death domain-mediated complex assembly|inhibition of death-inducing signaling complex assembly|negative regulation of death-inducing signalling complex assembly|down regulation of DISC assembly|inhibition of death-inducing signalling complex assembly|down-regulation of DISC assembly|negative regulation of DISC formation|downregulation of DISC assembly|negative regulation of DD-mediated complex assembly|down-regulation of DD-mediated complex assembly|down regulation of death-inducing signaling complex assembly|negative regulation of death domain-mediated complex assembly|down regulation of death domain-mediated complex assembly|down regulation of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|down-regulation of death-inducing signalling complex assembly|down regulation of DD-mediated complex assembly|inhibition of death-inducing signaling complex formation|inhibition of DD-mediated complex assembly|negative regulation of death-inducing signaling complex formation|down-regulation of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|downregulation of death domain-mediated complex assembly|downregulation of death-inducing signaling complex formation|negative regulation of DISC assembly|inhibition of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|downregulation of death-inducing signalling complex assembly|down regulation of death-inducing signalling complex assembly|inhibition of death domain-mediated complex assembly|down regulation of DISC formation|inhibition of DISC assembly|down-regulation of death-inducing signaling complex formation|negative regulation of death domain-mediated complex assembly involved in extrinsic apoptotic pathway|downregulation of DISC formation|downregulation of death-inducing signaling complex assembly bf 2014-05-29T09:33:20Z biological_process owl:Class GO:0072452 biolink:NamedThing response to G2 transition size control checkpoint signaling A process that occurs in response to signals generated as a result of G2/M transition size control checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in G2/M transition size control checkpoint|response to G2/M transition size control checkpoint signaling|G2/M transition size control checkpoint effector process|response to mitotic cell cycle G2/M transition size control checkpoint signaling mah 2010-12-09T11:14:12Z biological_process owl:Class GO:0072470 biolink:NamedThing response to cell size control checkpoint signaling A process that occurs in response to signals generated as a result of cell size control checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in cell size control checkpoint|response to mitotic cell cycle cell size control checkpoint signaling|cell size control checkpoint effector process mah 2010-12-09T11:46:13Z biological_process owl:Class GO:0070676 biolink:NamedThing intralumenal vesicle formation The invagination of the endosome membrane and resulting formation of a vesicle within the lumen of the endosome. tmpzr1t_l9r_go_relaxed.owl endosome membrane budding mah 2009-05-29T02:02:30Z biological_process owl:Class GO:0006900 biolink:NamedThing vesicle budding from membrane The evagination of a membrane, resulting in formation of a vesicle. tmpzr1t_l9r_go_relaxed.owl single-organism membrane budding|vesicle budding|membrane evagination|single organism membrane budding|vesicle biosynthesis|nonselective vesicle assembly|vesicle formation jl 2013-12-19T15:26:17Z GO:1902591|GO:0006902 biological_process owl:Class GO:0071904 biolink:NamedThing protein N-linked N-acetylgalactosaminylation via asparagine A process of protein N-linked glycosylation via asparagine in which N-acetylgalactosamine is added to the N4 of asparagine, forming an (S)-2-amino-4-(2-acetamido-2-deoxy-beta-D-galactopyranosyl)amino-4-oxobutanoic acid residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked N-acetylgalactosaminylation via asparagine RESID:AA0420 mah 2010-09-15T03:52:28Z biological_process owl:Class GO:0018218 biolink:NamedThing peptidyl-cysteine phosphorylation The phosphorylation of peptidyl-cysteine to form peptidyl-S-phospho-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0034 biological_process owl:Class GO:0072592 biolink:NamedThing oxygen metabolic process The chemical reactions and pathways involving diatomic oxygen (O2). tmpzr1t_l9r_go_relaxed.owl oxygen metabolism|diatomic oxygen metabolic process mah 2011-02-11T10:46:51Z biological_process owl:Class GO:0030691 biolink:NamedThing Noc2p-Noc3p complex A heterodimer associated with 66S preribosomes; predominantly nucleoplasmic, but also locates to the nucleolus; involved in ribosomal large subunit biogenesis. tmpzr1t_l9r_go_relaxed.owl Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0030689 biolink:NamedThing Noc complex Any of several heterodimers containing one or two Noc proteins, associated with preribosomal complexes; involved in ribosome biogenesis. tmpzr1t_l9r_go_relaxed.owl Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the definition uses Saccharomyces gene product names because this complex has only been described in Saccharomyces cerevisiae and no other names have yet arisen; the term nevertheless can be used for analogous complexes in other eukaryotes, and the definition can be changed if better wording is found. cellular_component owl:Class GO:0015419 biolink:NamedThing ABC-type sulfate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sulfate(out) = ADP + phosphate + sulfate(in). tmpzr1t_l9r_go_relaxed.owl sulfate transmembrane-transporting ATPase activity|sulfate/thiosulfate porter activity|ATPase-coupled sulfate transmembrane transporter activity|sulfate ABC transporter|sulfate-transporting ATPase activity|sulphate transporting ATPase activity RHEA:10192|MetaCyc:3.6.3.25-RXN|EC:7.3.2.3 molecular_function owl:Class GO:0051364 biolink:NamedThing N-terminal peptidyl-proline N-formylation The formylation of the N-terminal proline of proteins to form the derivative N-formylproline. tmpzr1t_l9r_go_relaxed.owl RESID:AA0384 biological_process owl:Class GO:0051926 biolink:NamedThing negative regulation of calcium ion transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion transport|inhibition of calcium ion transport|negative regulation of calcium transport|down regulation of calcium ion transport|downregulation of calcium ion transport biological_process owl:Class GO:0103077 biolink:NamedThing quercetin 3-glucoside 7-O-rhamnosyltransferase activity Catalysis of the reaction: quercetin-3-glucoside + UDP-L-rhamnose <=> quercetin-3-O-glucoside-7-O-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4161|RHEA:61188 molecular_function owl:Class GO:0106140 biolink:NamedThing P-TEFb complex binding Binding to a P-TEFb complex. tmpzr1t_l9r_go_relaxed.owl hjd 2018-08-17T18:17:50Z molecular_function owl:Class GO:1904140 biolink:NamedThing negative regulation of microglial cell migration Any process that stops, prevents or reduces the frequency, rate or extent of microglial cell migration. tmpzr1t_l9r_go_relaxed.owl down regulation of microglial cell migration|downregulation of microglial cell migration|down-regulation of microglial cell migration|inhibition of microglial cell migration nc 2015-04-13T09:07:03Z biological_process owl:Class GO:1905522 biolink:NamedThing negative regulation of macrophage migration Any process that stops, prevents or reduces the frequency, rate or extent of macrophage migration. tmpzr1t_l9r_go_relaxed.owl down regulation of macrophage migration|inhibition of macrophage migration|down-regulation of macrophage migration|downregulation of macrophage migration sl 2016-10-03T15:29:14Z biological_process owl:Class GO:0070893 biolink:NamedThing transposon integration Any process in which a transposable element is incorporated into another DNA molecule such as a chromosome. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-01T04:08:19Z biological_process owl:Class GO:0015074 biolink:NamedThing DNA integration The process in which a DNA segment is incorporated into another, usually larger, DNA molecule such as a chromosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019648 biolink:NamedThing formaldehyde assimilation via xylulose monophosphate cycle The pathway in which formaldehyde is used as a carbon source in the xylulose monophosphate cycle. Methylotrophic yeasts, but not bacteria, utilize the xylulose monophosphate cycle to fix formaldehyde and convert it into metabolically useful organic compounds. tmpzr1t_l9r_go_relaxed.owl formaldehyde fixation cycle|formaldehyde assimilation via xylulose-5-phosphate cycle MetaCyc:P185-PWY biological_process owl:Class GO:0072382 biolink:NamedThing minus-end-directed vesicle transport along microtubule The directed movement of a vesicle towards the minus end of a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule minus-end-directed vesicle distribution|microtubule minus-end-directed vesicle localization mah 2010-12-01T04:12:59Z biological_process owl:Class GO:0047496 biolink:NamedThing vesicle transport along microtubule The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule-based vesicle localization biological_process owl:Class GO:0004644 biolink:NamedThing phosphoribosylglycinamide formyltransferase activity Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide. tmpzr1t_l9r_go_relaxed.owl glycinamide ribonucleotide transformylase activity|GAR transformylase activity|GAR TFase activity|5'-phosphoribosylglycinamide transformylase activity|GAR formyltransferase activity|2-amino-N-ribosylacetamide 5'-phosphate transformylase activity|GART activity|10-formyltetrahydrofolate:5'-phosphoribosylglycinamide N-formyltransferase activity|5,10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase activity MetaCyc:GART-RXN|Reactome:R-HSA-73813|RHEA:15053|EC:2.1.2.2 molecular_function owl:Class GO:0016742 biolink:NamedThing hydroxymethyl-, formyl- and related transferase activity Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.1.2.- molecular_function owl:Class GO:0018164 biolink:NamedThing protein-DNA covalent cross-linking via peptidyl-threonine The formation of a covalent cross-link between DNA and a peptidyl-threonine residue by the formation of O-(phospho-5'-DNA)-L-threonine. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking via peptidyl-threonine RESID:AA0255 biological_process owl:Class GO:1900360 biolink:NamedThing regulation of pentasaccharide transport Any process that modulates the frequency, rate or extent of pentasaccharide transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:19:27Z biological_process owl:Class GO:1903028 biolink:NamedThing positive regulation of opsonization Any process that activates or increases the frequency, rate or extent of opsonization. tmpzr1t_l9r_go_relaxed.owl upregulation of opsonization|up regulation of opsonization|activation of opsonization|up-regulation of opsonization rl 2014-05-16T17:34:54Z biological_process owl:Class GO:0050766 biolink:NamedThing positive regulation of phagocytosis Any process that activates or increases the frequency, rate or extent of phagocytosis. tmpzr1t_l9r_go_relaxed.owl activation of phagocytosis|up regulation of phagocytosis|upregulation of phagocytosis|up-regulation of phagocytosis|stimulation of phagocytosis biological_process owl:Class GO:0072304 biolink:NamedThing regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis Any process that modulates the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0072039 biolink:NamedThing regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis Any process that modulates the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron. tmpzr1t_l9r_go_relaxed.owl regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis|regulation of mesenchymal stem cell apoptotic process involved in nephron morphogenesis mah 2010-01-25T03:08:34Z biological_process owl:Class GO:0110028 biolink:NamedThing positive regulation of mitotic spindle organization Any process that activates or increases the frequency, rate or extent of mitotic spindle organization. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-06T14:14:08Z biological_process owl:Class GO:0015533 biolink:NamedThing shikimate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: shikimate(out) + H+(out) = shikimate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl shikimate:hydrogen symporter activity molecular_function owl:Class GO:1902321 biolink:NamedThing methyl-branched fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of methyl-branched fatty acid. tmpzr1t_l9r_go_relaxed.owl methyl-branched fatty acid biosynthesis|methyl-branched fatty acid formation|methyl-branched fatty acid anabolism|methyl-branched fatty acid synthesis kmv 2013-07-23T20:40:46Z biological_process owl:Class GO:1905529 biolink:NamedThing regulation of uracil import across plasma membrane Any process that modulates the frequency, rate or extent of uracil import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-05T21:03:40Z biological_process owl:Class GO:0003916 biolink:NamedThing DNA topoisomerase activity Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl EC:5.6.2.- GO:0009387 molecular_function owl:Class GO:0033132 biolink:NamedThing negative regulation of glucokinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule. tmpzr1t_l9r_go_relaxed.owl inhibition of glucokinase activity|downregulation of glucokinase activity|down regulation of glucokinase activity|down-regulation of glucokinase activity|glucokinase inhibitor biological_process owl:Class GO:1903300 biolink:NamedThing negative regulation of hexokinase activity Any process that stops, prevents or reduces the frequency, rate or extent of hexokinase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of hexokinase type III activity|inhibition of hexokinase (phosphorylating)|negative regulation of hexokinase D|downregulation of hexokinase type IV (glucokinase) activity|down regulation of hexokinase type IV (glucokinase) activity|inhibition of ATP-dependent hexokinase activity|down-regulation of ATP:D-hexose 6-phosphotransferase activity|downregulation of hexokinase D|negative regulation of hexokinase type IV glucokinase activity|downregulation of hexokinase type I activity|negative regulation of ATP-dependent hexokinase activity|down-regulation of hexokinase type I activity|inhibition of hexokinase type II activity|down regulation of hexokinase type IV|down regulation of ATP:D-hexose 6-phosphotransferase activity|down regulation of hexokinase activity|down regulation of hexokinase type II activity|down-regulation of ATP-dependent hexokinase activity|inhibition of hexokinase activity|negative regulation of hexokinase type II activity|inhibition of hexokinase type I activity|down-regulation of hexokinase type IV|downregulation of ATP-dependent hexokinase activity|downregulation of ATP:D-hexose 6-phosphotransferase activity|downregulation of hexokinase type IV|down-regulation of hexokinase activity|negative regulation of glucose ATP phosphotransferase activity|down regulation of ATP-dependent hexokinase activity|down regulation of hexokinase D|downregulation of hexokinase (phosphorylating)|negative regulation of hexokinase type IV|down-regulation of hexokinase D|negative regulation of hexokinase type III activity|down-regulation of hexokinase type IV glucokinase activity|downregulation of hexokinase type IV glucokinase activity|negative regulation of hexokinase (phosphorylating)|downregulation of hexokinase activity|down-regulation of hexokinase (phosphorylating)|downregulation of hexokinase type II activity|down regulation of hexokinase type IV glucokinase activity|down regulation of glucose ATP phosphotransferase activity|downregulation of glucose ATP phosphotransferase activity|inhibition of hexokinase type III activity|inhibition of hexokinase type IV glucokinase activity|inhibition of glucose ATP phosphotransferase activity|down regulation of hexokinase type III activity|negative regulation of hexokinase type I activity|negative regulation of hexokinase type IV (glucokinase) activity|down-regulation of hexokinase type IV (glucokinase) activity|down-regulation of glucose ATP phosphotransferase activity|down-regulation of hexokinase type II activity|inhibition of hexokinase D|inhibition of ATP:D-hexose 6-phosphotransferase activity|inhibition of hexokinase type IV (glucokinase) activity|inhibition of hexokinase type IV|negative regulation of ATP:D-hexose 6-phosphotransferase activity|down regulation of hexokinase (phosphorylating)|downregulation of hexokinase type III activity|down regulation of hexokinase type I activity mr 2014-08-15T23:18:01Z biological_process owl:Class GO:0099091 biolink:NamedThing postsynaptic specialization, intracellular component A network of proteins adjacent to the postsynaptic membrane. Its major components include the proteins that spatially and functionally organize neurotransmitter receptors in the adjacent membrane, such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060860 biolink:NamedThing regulation of floral organ abscission Any process that modulates the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T03:59:45Z biological_process owl:Class GO:0001788 biolink:NamedThing antibody-dependent cellular cytotoxicity Cytolysis of target cells by natural killer cells, eosinophils, neutrophils, monocytes, or macrophages following engagement of antibodies bound to the target cells by Fc receptors on the effector cells. tmpzr1t_l9r_go_relaxed.owl antibody-dependent cell killing|antibody-dependent cell death|ADCC|antibody dependent cell death|antibody dependent cell killing|type VI hypersensitivity Wikipedia:Antibody-dependent_cell-mediated_cytotoxicity|Wikipedia:Antibody-dependent_cellular_cytotoxicity biological_process owl:Class GO:0016748 biolink:NamedThing succinyltransferase activity Catalysis of the transfer of a succinyl (3-carboxypropanoyl) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016082 biolink:NamedThing synaptic vesicle priming A process that converts synaptic vesicles to a state of competence for calcium triggered fusion with the active zone membrane by bringing the two membranes into very close proximity. Priming typically (but not always) occurs after docking (Jahn and Fasshauer, 2012). Primed vesicles are also capable of spontaneously fusing with the active zone membrane. tmpzr1t_l9r_go_relaxed.owl Although this process can occur outside of synaptic transmission, by convention we treat it as a part of synaptic transmission. (dos, pvn, fk synapse project 2015) biological_process owl:Class GO:0046668 biolink:NamedThing regulation of retinal cell programmed cell death Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the retina. tmpzr1t_l9r_go_relaxed.owl regulation of retinal programmed cell death biological_process owl:Class GO:2000895 biolink:NamedThing hemicellulose catabolic process The chemical reactions and pathways resulting in the breakdown of a hemicellulose. tmpzr1t_l9r_go_relaxed.owl hemicellulose catabolism jl 2011-07-28T02:08:11Z biological_process owl:Class GO:0072000 biolink:NamedThing extracellular polysaccharide catabolic process involved in ascospore release from ascus The chemical reactions and pathways resulting in the breakdown of polysaccharides in the ascus wall that contributes to the release of ascospores from the ascus. tmpzr1t_l9r_go_relaxed.owl ascus endolysis|extracellular polysaccharide degradation involved in ascospore release from ascus|extracellular polysaccharide catabolism involved in ascospore release from ascus|ascus catabolic process|extracellular polysaccharide breakdown involved in ascospore release from ascus mah 2010-10-25T05:30:41Z biological_process owl:Class GO:0032481 biolink:NamedThing positive regulation of type I interferon production Any process that activates or increases the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl activation of type I interferon production|up regulation of type I interferon production|up-regulation of type I interferon production|stimulation of type I interferon production|positive regulation of type I IFN production|upregulation of type I interferon production biological_process owl:Class GO:0032479 biolink:NamedThing regulation of type I interferon production Any process that modulates the frequency, rate, or extent of interferon type I production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl regulation of type I IFN production biological_process owl:Class GO:0039011 biolink:NamedThing pronephric proximal tubule morphogenesis The process in which the anatomical structures of a pronephric nephron proximal tubule are generated and organized. A pronephric nephron tubule is an epithelial tube that is part of the pronephros. tmpzr1t_l9r_go_relaxed.owl pronephros proximal tubule morphogenesis bf 2010-07-02T09:53:12Z biological_process owl:Class GO:0072158 biolink:NamedThing proximal tubule morphogenesis The process in which the anatomical structures of a proximal tubule are generated and organized. The proximal tubule is a nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle. It has a brush border epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:35:36Z biological_process owl:Class GO:0044284 biolink:NamedThing mitochondrial crista junction A tubular structure of relatively uniform size that connects a mitochondrial crista to the mitochondrial inner boundary membrane. tmpzr1t_l9r_go_relaxed.owl crista junction|cristae junction https://github.com/geneontology/go-ontology/issues/18994 jl 2010-02-02T10:07:39Z cellular_component owl:Class GO:0044232 biolink:NamedThing organelle membrane contact site A zone of apposition between the membranes of an organelle with another membrane, either another membrane of the same organelle, a membrane of another organelle, or the plasma membrane. Membrane contact sites (MCSs) are structured by bridging complexes. They are specialized for communication, including the efficient traffic of small molecules such as Ca2+ ions and lipids, as well as enzyme-substrate interactions. tmpzr1t_l9r_go_relaxed.owl inter-organelle junction|MCS|interorganelle junction https://github.com/geneontology/go-ontology/issues/18994 jl 2010-01-07T03:44:20Z cellular_component owl:Class GO:0062209 biolink:NamedThing spatial regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination Any process that modulates the distribution of sites along the chromosome where meiotic DNA double-strand break formation takes place as part of reciprocal meiotic recombination. tmpzr1t_l9r_go_relaxed.owl regulation of spatial distribution of meiotic DSB formation involved in reciprocal meiotic recombination|crossover interference|regulation of spatial distribution of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|DSB interference dph 2020-02-03T19:19:29Z biological_process owl:Class GO:2000324 biolink:NamedThing positive regulation of glucocorticoid receptor signaling pathway Any process that activates or increases the frequency, rate or extent of glucocorticoid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucocorticoid receptor signalling pathway vk 2011-01-18T04:39:05Z biological_process owl:Class GO:0140449 biolink:NamedThing centromere-nuclear envelope anchor activity The binding activity of a molecule that brings together the centromeric region of a chromosome and the inner nuclear membrane by interacting with both the centromere/kinetochore complex and the nuclear membrane, in order to establish and maintain the centromere/kinetochore location. tmpzr1t_l9r_go_relaxed.owl centromere-inner nuclear envelope tether activity|chromosome, centromeric region-nuclear envelope anchor activity|centromere nuclear envelope tether activity|nuclear envelope-centromere tether activity|nuclear envelope-centromere anchor activity|centromere-inner nuclear envelope anchor activity|centromere nuclear envelope anchor activity https://github.com/geneontology/go-ontology/issues/19227 pg 2020-04-07T06:27:08Z molecular_function owl:Class GO:0043495 biolink:NamedThing protein-membrane adaptor activity The binding activity of a molecule that brings together a protein or a protein complex with a membrane, or bringing together two membranes, either via membrane lipid binding or by interacting with a membrane protein, to establish or maintain the localization of the protein, protein complex or organelle. tmpzr1t_l9r_go_relaxed.owl protein membrane adaptor|anchoring|protein membrane anchor|protein membrane adaptor activity https://github.com/geneontology/go-ontology/issues/19090 molecular_function owl:Class GO:0032873 biolink:NamedThing negative regulation of stress-activated MAPK cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade. tmpzr1t_l9r_go_relaxed.owl down-regulation of stress-activated MAPK cascade|negative regulation of stress-activated MAPK signalling pathway|downregulation of stress-activated MAPK cascade|negative regulation of stress-activated MAPKKK cascade|negative regulation of stress-activated MAPK signaling pathway|inhibition of stress-activated MAPK cascade|negative regulation of p38 MAPK signaling|negative regulation of stress-activated MAPKKK signalling pathway|negative regulation of p38 MAPK signalling|negative regulation of stress-activated MAPKKK signaling pathway|down regulation of stress-activated MAPK cascade biological_process owl:Class GO:0019841 biolink:NamedThing retinol binding Binding to retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation. tmpzr1t_l9r_go_relaxed.owl vitamin A1 binding|vitamin A1 alcohol binding molecular_function owl:Class GO:0052322 biolink:NamedThing positive regulation of phytoalexin biosynthetic process Any process that activates, maintains or increases the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins. tmpzr1t_l9r_go_relaxed.owl stimulation of phytoalexin biosynthesis|up regulation of phytoalexin biosynthesis|activation of phytoalexin biosynthesis|up-regulation of phytoalexin biosynthesis|positive regulation of phytoalexin biosynthesis|upregulation of phytoalexin biosynthesis biological_process owl:Class GO:0052320 biolink:NamedThing positive regulation of phytoalexin metabolic process Any process that activates, maintains or increases the frequency, rate or extent of phytoalexin metabolism, the chemical reactions and pathways involving phytoalexins. tmpzr1t_l9r_go_relaxed.owl stimulation of phytoalexin metabolism|up regulation of phytoalexin metabolism|activation of phytoalexin metabolism|upregulation of phytoalexin metabolism|positive regulation of phytoalexin metabolism|up-regulation of phytoalexin metabolism biological_process owl:Class GO:0062089 biolink:NamedThing regulation of taurine biosynthetic process Any process that modulates the rate, frequency or extent of taurine biosynthesis. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-07T14:05:44Z biological_process owl:Class GO:0098906 biolink:NamedThing regulation of Purkinje myocyte action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a Purkinje myocyte. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:58:56Z biological_process owl:Class GO:0042491 biolink:NamedThing inner ear auditory receptor cell differentiation The process in which a relatively unspecialized inner cell acquires specialized features of an auditory hair cell. tmpzr1t_l9r_go_relaxed.owl auditory receptor cell differentiation|auditory hair cell differentiation Note that this term refers to the mechanosensory hair cells of the inner ear. biological_process owl:Class GO:0060113 biolink:NamedThing inner ear receptor cell differentiation The process in which relatively unspecialized cells, acquire specialized structural and/or functional features of inner ear receptor cells. Inner ear receptor cells are mechanorecptors found in the inner ear responsible for transducing signals involved in balance and sensory perception of sound. tmpzr1t_l9r_go_relaxed.owl inner ear hair cell differentiation biological_process owl:Class GO:0042634 biolink:NamedThing regulation of hair cycle Any process that modulates the frequency, rate or extent of the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071693 biolink:NamedThing protein transport within extracellular region The directed movement of proteins in the extracellular region, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T04:02:35Z biological_process owl:Class GO:0035592 biolink:NamedThing establishment of protein localization to extracellular region The directed movement of a protein to a specific location within the extracellular region. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation in extracellular region|establishment of protein localization in extracellular region bf 2010-11-09T10:25:08Z biological_process owl:Class GO:1904506 biolink:NamedThing negative regulation of telomere maintenance in response to DNA damage Any process that stops, prevents or reduces the frequency, rate or extent of telomere maintenance in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl down-regulation of telomere maintenance in response to DNA damage|down regulation of telomere maintenance in response to DNA damage|down regulation of DNA damage response, telomere maintenance|downregulation of DNA damage response, telomere maintenance|negative regulation of DNA damage response, telomere maintenance|downregulation of telomere maintenance in response to DNA damage|down-regulation of DNA damage response, telomere maintenance|inhibition of telomere maintenance in response to DNA damage|inhibition of DNA damage response, telomere maintenance nc 2015-07-24T16:06:02Z biological_process owl:Class GO:0034631 biolink:NamedThing microtubule anchoring at spindle pole body Any process in which a microtubule is maintained in a specific location in a cell by attachment to a spindle pole body. Microtubules attach to spindle pole bodies at the minus end. tmpzr1t_l9r_go_relaxed.owl attachment of spindle microtubules to spindle pole body|microtubule anchoring at SPB|attachment of spindle microtubules to SPB biological_process owl:Class GO:0014842 biolink:NamedThing regulation of skeletal muscle satellite cell proliferation Any process that modulates the frequency, rate or extent of skeletal muscle satellite cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014857 biolink:NamedThing regulation of skeletal muscle cell proliferation Any process that modulates the frequency, rate or extent of skeletal muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051284 biolink:NamedThing positive regulation of sequestering of calcium ion Any process that activates or increases the frequency, rate or extent of the binding or confining calcium ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl up regulation of sequestering of calcium ion|positive regulation of storage of calcium ion (Ca2+)|positive regulation of sequestering of calcium ion (Ca2+)|activation of sequestering of calcium ion|positive regulation of sequestration of calcium ion (Ca2+)|positive regulation of calcium ion (Ca2+) sequestering|positive regulation of calcium ion (Ca2+) retention|stimulation of sequestering of calcium ion|positive regulation of calcium ion (Ca2+) sequestration|positive regulation of calcium ion (Ca2+) storage|positive regulation of retention of calcium ion (Ca2+)|up-regulation of sequestering of calcium ion|upregulation of sequestering of calcium ion biological_process owl:Class GO:0009709 biolink:NamedThing terpenoid indole alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoid indole alkaloids, compounds formed from the condensation of tryptamine (derived from tryptophan) and secologanin (derived from geranyl pyrophosphate). tmpzr1t_l9r_go_relaxed.owl terpenoid indole alkaloid synthesis|terpenoid indole alkaloid formation|terpenoid indole alkaloid biosynthesis|terpenoid indole alkaloid anabolism biological_process owl:Class GO:1902154 biolink:NamedThing positive regulation of response to DNA damage checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of DNA damage checkpoint effector process|upregulation of response to signal involved in DNA damage checkpoint|up-regulation of response to signal involved in DNA damage checkpoint|activation of response to signal involved in DNA damage checkpoint|upregulation of DNA damage checkpoint effector process|positive regulation of response to signal involved in DNA damage checkpoint|up regulation of DNA damage checkpoint effector process|up regulation of response to DNA damage checkpoint signaling|activation of response to DNA damage checkpoint signaling|up-regulation of DNA damage checkpoint effector process|up-regulation of response to DNA damage checkpoint signaling|upregulation of response to DNA damage checkpoint signaling|activation of DNA damage checkpoint effector process|up regulation of response to signal involved in DNA damage checkpoint jl 2013-05-21T15:44:44Z biological_process owl:Class GO:0010594 biolink:NamedThing regulation of endothelial cell migration Any process that modulates the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010632 biolink:NamedThing regulation of epithelial cell migration Any process that modulates the frequency, rate or extent of epithelial cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045637 biolink:NamedThing regulation of myeloid cell differentiation Any process that modulates the frequency, rate or extent of myeloid cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061805 biolink:NamedThing mitotic spindle elongation (spindle phase three) The cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic anaphase B. tmpzr1t_l9r_go_relaxed.owl mitotic spindle elongation during mitotic anaphase|mitotic spindle elongation during anaphase|mitotic anaphase spindle elongation dph 2016-11-06T23:09:43Z biological_process owl:Class GO:0007052 biolink:NamedThing mitotic spindle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic spindle organization in nucleus|mitotic spindle organization and biogenesis in cell nucleus|mitotic spindle organization and biogenesis in nucleus|spindle organization and biogenesis during mitosis|mitotic spindle stabilization|spindle organization and biogenesis in nucleus during mitosis|mitotic spindle organization and biogenesis|mitotic spindle organisation|mitotic spindle organisation in nucleus https://github.com/geneontology/go-ontology/issues/15341 In fission yeast most mitotic spindle organization occurs in the nucleus. GO:0030472|GO:0043148|GO:0000071 biological_process owl:Class GO:0004917 biolink:NamedThing interleukin-7 receptor activity Combining with interleukin-7 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-7R|IL-7 receptor activity molecular_function owl:Class GO:0097744 biolink:NamedThing urate salt excretion The elimination by an organism of urate salt or uric acid. tmpzr1t_l9r_go_relaxed.owl urate excretion pr 2016-10-27T11:35:59Z biological_process owl:Class GO:0007588 biolink:NamedThing excretion The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Excretion biological_process owl:Class GO:1901922 biolink:NamedThing regulation of sclerotium development Any process that modulates the frequency, rate or extent of sclerotium development. tmpzr1t_l9r_go_relaxed.owl di 2013-02-15T20:00:19Z biological_process owl:Class GO:0009732 biolink:NamedThing detection of hexose stimulus The series of events in which a stimulus from a hexose is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of hexose stimulus biological_process owl:Class GO:0034287 biolink:NamedThing detection of monosaccharide stimulus The series of events in which a stimulus from a monosaccharide is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of monosaccharide stimulus biological_process owl:Class GO:0102553 biolink:NamedThing lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [pyruvate dehydrogenase E2 protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + 2 H+ + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier]. tmpzr1t_l9r_go_relaxed.owl EC:2.8.1.8|MetaCyc:RXN-14957 molecular_function owl:Class GO:0004866 biolink:NamedThing endopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides. tmpzr1t_l9r_go_relaxed.owl proteinase inhibitor|endoproteinase inhibitor|alpha-2 macroglobulin molecular_function owl:Class GO:1902310 biolink:NamedThing positive regulation of peptidyl-serine dephosphorylation Any process that activates or increases the frequency, rate or extent of peptidyl-serine dephosphorylation. tmpzr1t_l9r_go_relaxed.owl up-regulation of peptidyl-serine dephosphorylation|upregulation of peptidyl-serine dephosphorylation|activation of peptidyl-serine dephosphorylation|up regulation of peptidyl-serine dephosphorylation rl 2013-07-19T10:35:15Z biological_process owl:Class GO:1902308 biolink:NamedThing regulation of peptidyl-serine dephosphorylation Any process that modulates the frequency, rate or extent of peptidyl-serine dephosphorylation. tmpzr1t_l9r_go_relaxed.owl rl 2013-07-19T10:34:59Z biological_process owl:Class GO:2000734 biolink:NamedThing negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation Any process that stops, prevents or reduces the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|negative regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation|negative regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|negative regulation of GDNF receptor signaling pathway of ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation yaf 2011-06-13T11:14:44Z biological_process owl:Class GO:2000904 biolink:NamedThing regulation of starch metabolic process Any process that modulates the frequency, rate or extent of starch metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of starch metabolism tb 2011-07-28T11:33:13Z biological_process owl:Class GO:0046125 biolink:NamedThing pyrimidine deoxyribonucleoside metabolic process The chemical reactions and pathways involving any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside metabolism biological_process owl:Class GO:0047159 biolink:NamedThing 1-alkenylglycerophosphocholine O-acyltransferase activity Catalysis of the reaction: 1-alkenylglycerophosphocholine + acyl-CoA = 1-alkenyl-2-acylglycerophosphocholine + CoA. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:1-alkenylglycerophosphocholine O-acyltransferase activity EC:2.3.1.25|MetaCyc:2.3.1.104-RXN|RHEA:10344 molecular_function owl:Class GO:0098993 biolink:NamedThing anchored component of synaptic vesicle membrane The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098563 biolink:NamedThing intrinsic component of synaptic vesicle membrane The component of the synaptic vesicle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051124 biolink:NamedThing synaptic assembly at neuromuscular junction The assembly of a synapse at a neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl synaptic growth at neuromuscular junction|cholinergic synaptogenesis biological_process owl:Class GO:0007416 biolink:NamedThing synapse assembly The aggregation, arrangement and bonding together of a set of components to form a synapse. This process ends when the synapse is mature (functional). tmpzr1t_l9r_go_relaxed.owl synapse biogenesis|synaptogenesis Wikipedia:Synaptogenesis biological_process owl:Class GO:1901232 biolink:NamedThing regulation of convergent extension involved in axis elongation Any process that modulates the frequency, rate or extent of convergent extension involved in axis elongation. tmpzr1t_l9r_go_relaxed.owl vk 2012-08-07T14:21:46Z biological_process owl:Class GO:0047321 biolink:NamedThing diphosphate-protein phosphotransferase activity Catalysis of the reaction: microsomal-membrane protein + diphosphate = diphosphate + O-phospho-microsomal-membrane protein. tmpzr1t_l9r_go_relaxed.owl pyrophosphate-protein phosphotransferase activity|triphosphate:microsomal-membrane-protein phosphotransferase activity|DiPPT|pyrophosphate:protein phosphotransferase activity|diphosphate:microsomal-membrane-protein O-phosphotransferase activity|triphosphate-protein phosphotransferase activity EC:2.7.99.1|MetaCyc:2.7.99.1-RXN molecular_function owl:Class GO:0014711 biolink:NamedThing regulation of branchiomeric skeletal muscle development Any process that modulates the frequency, rate or extent of branchiomeric skeletal muscle development. Branchiomeric skeletal muscle development is the process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102254 biolink:NamedThing neoagarotetraose 1,3-alpha-3,6-anhydro-L-galactosidase activity Catalysis of the reaction: neoagarotetraose + H2O <=> 3,6-anhydro-alpha-L-galactopyranose + agarotriose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12427|EC:3.2.1.159 molecular_function owl:Class GO:0140199 biolink:NamedThing negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:31:23Z biological_process owl:Class GO:0033646 biolink:NamedThing host intracellular part Any constituent part of the living contents of a host cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host cell intracellular part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:0034979 biolink:NamedThing NAD-dependent protein deacetylase activity Catalysis of the removal of one or more acetyl groups from a protein, requiring NAD. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22295 Reactome:R-HSA-9667952|Reactome:R-HSA-5688289|Reactome:R-HSA-5688294|Reactome:R-HSA-9620532|Reactome:R-HSA-5685953|Reactome:R-HSA-5211239|Reactome:R-HSA-3371467 molecular_function owl:Class GO:0002693 biolink:NamedThing positive regulation of cellular extravasation Any process that activates or increases the frequency, rate, or extent of cellular extravasation. tmpzr1t_l9r_go_relaxed.owl stimulation of cellular extravasation|up-regulation of cellular extravasation|upregulation of cellular extravasation|up regulation of cellular extravasation|activation of cellular extravasation biological_process owl:Class GO:1905908 biolink:NamedThing positive regulation of amyloid fibril formation Any process that activates or increases the frequency, rate or extent of amyloid fibril formation. tmpzr1t_l9r_go_relaxed.owl activation of amyloid structure formation|positive regulation of amyloid structure formation|upregulation of amyloid fibril assembly|up regulation of amyloid fibril assembly|up-regulation of amyloid structure formation|activation of amyloid structure assembly|upregulation of amyloid fibril formation|up regulation of amyloid structure assembly|positive regulation of amyloid fibril assembly|activation of amyloid fibril formation|up regulation of amyloid fibril formation|upregulation of amyloid structure assembly|up-regulation of amyloid fibril formation|upregulation of amyloid structure formation|positive regulation of amyloid structure assembly|up-regulation of amyloid structure assembly|activation of amyloid fibril assembly|up-regulation of amyloid fibril assembly|up regulation of amyloid structure formation Although deposition of amyloid fibrils is associated with diseases, e.g. Alzheimer's disease, amyloid formation is a normal process. Disease occurs when the balance between amyloid formation and clearance is disrupted (reviewed e.g. in PMID:29654159 and PMID:28937655). An example of a normal amyloid complex is composed of human RIP1 and RIP3 kinases (PMID:22817896). bc 2017-02-03T15:44:05Z biological_process owl:Class GO:0033847 biolink:NamedThing O-phosphoserine sulfhydrylase activity Catalysis of the reaction: O-phospho-L-serine + hydrogen sulfide = L-cysteine + phosphate. tmpzr1t_l9r_go_relaxed.owl O-phosphoserine(thiol)-lyase activity|O-phospho-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase activity EC:2.5.1.65|RHEA:10252|MetaCyc:2.5.1.65-RXN molecular_function owl:Class GO:2000224 biolink:NamedThing regulation of testosterone biosynthetic process Any process that modulates the frequency, rate or extent of testosterone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl yaf 2010-11-09T10:38:33Z biological_process owl:Class GO:0051311 biolink:NamedThing meiotic metaphase plate congression The cell cycle process in which chromosomes are aligned at the metaphase plate, a plane halfway between the poles of the meiotic spindle, during meiosis. tmpzr1t_l9r_go_relaxed.owl metaphase plate congression during meiosis biological_process owl:Class GO:0034275 biolink:NamedThing kynurenic acid metabolic process The chemical reactions and pathways involving kynurenic acid, 4-hydroxyquinoline-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyquinoline-2-carboxylic acid metabolic process|kynurenic acid metabolism biological_process owl:Class GO:0001803 biolink:NamedThing regulation of type III hypersensitivity Any process that modulates the frequency, rate, or extent of type III hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002883 biolink:NamedThing regulation of hypersensitivity Any process that modulates the frequency, rate, or extent of hypersensitivity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903059 biolink:NamedThing regulation of protein lipidation Any process that modulates the frequency, rate or extent of protein lipidation. tmpzr1t_l9r_go_relaxed.owl regulation of lipid:protein modification|regulation of protein amino acid lipidation rph 2014-05-28T13:21:18Z biological_process owl:Class GO:0030196 biolink:NamedThing cyanide hydratase activity Catalysis of the reaction: formamide = H(2)O + hydrogen cyanide. tmpzr1t_l9r_go_relaxed.owl formamide hydro-lyase (cyanide-forming)|formamide dehydratase activity|formamide hydro-lyase activity EC:4.2.1.66|KEGG_REACTION:R01408|MetaCyc:CYANIDE-HYDRATASE-RXN|RHEA:21720 molecular_function owl:Class GO:0099068 biolink:NamedThing postsynapse assembly The aggregation, arrangement and bonding together of a set of components to form a postsynapse. tmpzr1t_l9r_go_relaxed.owl postsynapse biogenesis biological_process owl:Class GO:0099173 biolink:NamedThing postsynapse organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a postsynapse. tmpzr1t_l9r_go_relaxed.owl postsynapse organization and biogenesis|postsynapse organisation|postsynapse development|postsynapse morphogenesis biological_process owl:Class GO:0046924 biolink:NamedThing peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine The cross-linking of a cysteine residue to an L-phenylalanine residue to form 2-(S-L-cysteinyl)-L-phenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0340 biological_process owl:Class GO:2000875 biolink:NamedThing negative regulation of glyoxylate cycle Any process that stops, prevents or reduces the frequency, rate or extent of glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of glyoxylate bypass bf 2011-07-27T01:27:15Z biological_process owl:Class GO:0033179 biolink:NamedThing proton-transporting V-type ATPase, V0 domain A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033177 biolink:NamedThing proton-transporting two-sector ATPase complex, proton-transporting domain A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043691 biolink:NamedThing reverse cholesterol transport The directed movement of peripheral cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030301 biolink:NamedThing cholesterol transport The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102884 biolink:NamedThing alpha-zingiberene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> zingiberene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:28643|MetaCyc:RXN-8425|EC:4.2.3.65 molecular_function owl:Class GO:0043664 biolink:NamedThing host peribacteroid membrane A host-derived membrane that surrounds one or more bacteroids (such as nitrogen-fixing bacteroids within legume root nodule cells). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006991 biolink:NamedThing response to sterol depletion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol depletion response biological_process owl:Class GO:0051111 biolink:NamedThing peptidyl-histidine adenylylation The adenylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-adenosine)-L-histidine (otherwise known as tau-AMP-histidine, tele-AMP-histidine) or peptidyl-3'-(phospho-5'-adenosine)-L-histidine (otherwise known as pi-AMP-histidine, pros-AMP-histidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0371 biological_process owl:Class GO:1903595 biolink:NamedThing positive regulation of histamine secretion by mast cell Any process that activates or increases the frequency, rate or extent of histamine secretion by mast cell. tmpzr1t_l9r_go_relaxed.owl up regulation of histamine secretion by mast cell|up-regulation of histamine secretion by mast cell|upregulation of histamine secretion by mast cell|activation of histamine secretion by mast cell als 2014-11-06T13:19:26Z biological_process owl:Class GO:0050729 biolink:NamedThing positive regulation of inflammatory response Any process that activates or increases the frequency, rate or extent of the inflammatory response. tmpzr1t_l9r_go_relaxed.owl upregulation of inflammatory response|stimulation of inflammatory response|up-regulation of inflammatory response|up regulation of inflammatory response|activation of inflammatory response biological_process owl:Class GO:2000949 biolink:NamedThing negative regulation of xyloglucan metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of xyloglucan metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of xyloglucan metabolism tt 2011-08-01T02:16:59Z biological_process owl:Class GO:2000948 biolink:NamedThing regulation of xyloglucan metabolic process Any process that modulates the frequency, rate or extent of xyloglucan metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of xyloglucan metabolism tt 2011-08-01T02:16:54Z biological_process owl:Class GO:0045907 biolink:NamedThing positive regulation of vasoconstriction Any process that activates or increases the frequency, rate or extent of vasoconstriction. tmpzr1t_l9r_go_relaxed.owl upregulation of vasoconstriction|up regulation of vasoconstriction|up-regulation of vasoconstriction|stimulation of vasoconstriction|activation of vasoconstriction biological_process owl:Class GO:0050369 biolink:NamedThing [tyrosine 3-monooxygenase] kinase activity Catalysis of the reaction: ATP + [tyrosine-3-monooxygenase] = ADP + phospho-[tyrosine-3-monooxygenase]. tmpzr1t_l9r_go_relaxed.owl pheochromocytoma tyrosine hydroxylase-associated kinase activity|STK4|tyrosine 3-monooxygenase kinase activity|tyrosine 3-monooxygenase kinase (phosphorylating) activity|ATP:tyrosine-3-monoxygenase phosphotransferase activity MetaCyc:2.7.11.6-RXN|EC:2.7.11.6|RHEA:17133 molecular_function owl:Class GO:1905138 biolink:NamedThing positive regulation of viral DNA genome packaging via site-specific sequence recognition Any process that activates or increases the frequency, rate or extent of viral DNA genome packaging via site-specific sequence recognition. tmpzr1t_l9r_go_relaxed.owl up regulation of viral DNA genome packaging via site-specific sequence recognition|activation of viral DNA genome packaging via site-specific sequence recognition|up-regulation of viral DNA genome packaging via site-specific sequence recognition|upregulation of viral DNA genome packaging via site-specific sequence recognition pr 2016-04-13T11:37:22Z biological_process owl:Class GO:1905137 biolink:NamedThing regulation of viral DNA genome packaging via site-specific sequence recognition Any process that modulates the frequency, rate or extent of viral DNA genome packaging via site-specific sequence recognition. tmpzr1t_l9r_go_relaxed.owl pr 2016-04-13T11:37:13Z biological_process owl:Class GO:0061108 biolink:NamedThing seminal vesicle epithelium development The progression of the seminal vesicle epithelium over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-30T10:19:54Z biological_process owl:Class GO:0035295 biolink:NamedThing tube development The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043198 biolink:NamedThing dendritic shaft Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines. tmpzr1t_l9r_go_relaxed.owl trunk NIF_Subcellular:sao2034472720 cellular_component owl:Class GO:0062037 biolink:NamedThing D-loop DNA binding Binding to a DNA D-loop. A D-loop is a three-stranded DNA structure formed by the invasion of a single DNA strand that base pairs with one strand of duplex DNA, while the rest of the double-stranded DNA does not unwind. tmpzr1t_l9r_go_relaxed.owl DNA displacement loop binding dph 2018-04-30T15:21:21Z molecular_function owl:Class GO:0000217 biolink:NamedThing DNA secondary structure binding Binding to a DNA secondary structure element such as a four-way junction, a bubble, a loop, Y-form DNA, or a double-strand/single-strand junction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900540 biolink:NamedThing fumonisin catabolic process The chemical reactions and pathways resulting in the breakdown of fumonisin. tmpzr1t_l9r_go_relaxed.owl fumonisin degradation|fumonisin catabolism|fumonisin breakdown tb 2012-05-11T12:54:12Z biological_process owl:Class GO:0002781 biolink:NamedThing antifungal peptide production The synthesis or release of an antifungal peptide during an immune response, resulting in an increase in intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0002775 biolink:NamedThing antimicrobial peptide production The synthesis or release of an antimicrobial peptide during an immune response, resulting in an increase in intracellular or extracellular levels. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0043887 biolink:NamedThing melibiose:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: melibiose(out) + Na+(out) = melibiose(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl melibiose/Na+ symporter activity|melibiose/sodium symporter activity|Na+-melibiose symporter activity|melibiose-sodium symporter activity|thiomethylgalactoside permease II|MelB|Na+ (Li+)/melibiose symporter activity|sodium/melibiose symporter activity|Na+/melibiose symporter activity|melibiose:Na+ symporter activity|sodium:melibiose symporter activity|sodium-melibiose symporter activity|melibiose-Na+ symporter activity|Na+:melibiose symporter activity|melibiose carrier protein|melibiose permease molecular_function owl:Class GO:0015487 biolink:NamedThing melibiose:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: melibiose(out) + monovalent cation(out) = melibiose(in) + monovalent cation(in). tmpzr1t_l9r_go_relaxed.owl melibiose permease activity|melibiose:monovalent cation symporter activity molecular_function owl:Class GO:1900299 biolink:NamedThing positive regulation of hexasaccharide transport Any process that activates or increases the frequency, rate or extent of hexasaccharide transport. tmpzr1t_l9r_go_relaxed.owl up regulation of hexasaccharide transport|upregulation of hexasaccharide transport|up-regulation of hexasaccharide transport|activation of hexasaccharide transport tt 2012-04-05T07:44:49Z biological_process owl:Class GO:0070638 biolink:NamedThing pyridine nucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any pyridine nucleoside, a nucleoside in which a pyridine base covalently bonded to a sugar, usually ribose. tmpzr1t_l9r_go_relaxed.owl pyridine nucleoside degradation|pyridine nucleoside breakdown|pyridine nucleoside catabolism mah 2009-05-07T02:27:14Z biological_process owl:Class GO:0097055 biolink:NamedThing agmatine biosynthetic process The chemical reactions and pathways resulting in the formation of agmatine ((4-aminobutyl)guanidine, NH2-CH2-CH2-CH2-CH2-NH-C(-NH2)(=NH)). Agmatine is the decarboxylation product of the amino acid arginine and is an intermediate in polyamine biosynthesis. It is synthesized in the brain, stored in synaptic vesicles, accumulated by uptake, released by membrane depolarization, and inactivated by agmatinase. tmpzr1t_l9r_go_relaxed.owl agmatine synthesis|agmatine biosynthesis|agmatine formation|agmatine anabolism pr 2011-05-25T03:56:17Z biological_process owl:Class GO:1901162 biolink:NamedThing primary amino compound biosynthetic process The chemical reactions and pathways resulting in the formation of primary amino compound. tmpzr1t_l9r_go_relaxed.owl primary amino compound anabolism|primary amino compound synthesis|primary amino compound formation|primary amino compound biosynthesis bf 2012-07-18T04:45:14Z biological_process owl:Class GO:0044405 biolink:NamedThing detection of host The set of specific processes that allow an organism to detect the presence of its host via physical or chemical signals. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl recognition of host biological_process owl:Class GO:0098543 biolink:NamedThing detection of other organism The series of events in which a stimulus from another organism is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl recognition of other organism involved in symbiotic interaction|recognition of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/17977 dos 2013-11-11T14:28:54Z GO:0051824 biological_process owl:Class GO:0004015 biolink:NamedThing adenosylmethionine-8-amino-7-oxononanoate transaminase activity Catalysis of the reaction: 8-amino-7-oxononanoate + S-adenosyl-L-methionine(1+) = 7,8-diaminononanoate + S-adenosyl-4-methylthio-2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl 7,8-diaminononanoate transaminase activity|DAPA transaminase activity|7,8-diamino-pelargonic acid aminotransferase activity|diaminopelargonate synthase activity|7-keto-8-aminopelargonic acid aminotransferase activity|7,8-diaminopelargonic acid aminotransferase activity|adenosyl methionine-8-amino-7-oxononanoate transaminase activity|adenosylmethionine-8-amino-7-oxononanoate aminotransferase activity|7-keto-8-aminopelargonic acid|adenosylmethionine--8-amino-7-oxononanoate aminotransferase activity|S-adenosyl-L-methionine:8-amino-7-oxononanoate aminotransferase activity|7,8-diaminonanoate transaminase activity|DAPA aminotransferase activity|7,8-diaminononanoate aminotransferase activity RHEA:16861|MetaCyc:DAPASYN-RXN|KEGG_REACTION:R03231|EC:2.6.1.62 molecular_function owl:Class GO:0045191 biolink:NamedThing regulation of isotype switching Any process that modulates the frequency, rate or extent of isotype switching. tmpzr1t_l9r_go_relaxed.owl regulation of class switch recombination|regulation of isotype switch recombination|regulation of class switching biological_process owl:Class GO:0050864 biolink:NamedThing regulation of B cell activation Any process that modulates the frequency, rate or extent of B cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte activation|regulation of B lymphocyte activation|regulation of B-cell activation biological_process owl:Class GO:1904394 biolink:NamedThing negative regulation of skeletal muscle acetylcholine-gated channel clustering Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle acetylcholine-gated channel clustering. tmpzr1t_l9r_go_relaxed.owl inhibition of skeletal muscle nicotinic acetylcholine receptor clustering|negative regulation of skeletal muscle AChR clustering|downregulation of skeletal muscle acetylcholine-gated channel clustering|downregulation of skeletal muscle nicotinic acetylcholine receptor clustering|down-regulation of skeletal muscle AChR clustering|down-regulation of skeletal muscle nicotinic acetylcholine receptor clustering|downregulation of skeletal muscle AChR clustering|inhibition of skeletal muscle AChR clustering|down regulation of skeletal muscle AChR clustering|down regulation of skeletal muscle acetylcholine-gated channel clustering|negative regulation of skeletal muscle nicotinic acetylcholine receptor clustering|down regulation of skeletal muscle nicotinic acetylcholine receptor clustering|down-regulation of skeletal muscle acetylcholine-gated channel clustering|inhibition of skeletal muscle acetylcholine-gated channel clustering sl 2015-06-23T19:23:31Z biological_process owl:Class GO:0010717 biolink:NamedThing regulation of epithelial to mesenchymal transition Any process that modulates the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071491 biolink:NamedThing cellular response to red light Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl cellular response to red light stimulus mah 2009-12-18T02:19:47Z biological_process owl:Class GO:0010114 biolink:NamedThing response to red light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl response to red light stimulus biological_process owl:Class GO:0010925 biolink:NamedThing positive regulation of inositol-polyphosphate 5-phosphatase activity Any process that increases the rate or frequency of inositol-polyphosphate 5-phosphatase activity, the catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019408 biolink:NamedThing dolichol biosynthetic process The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. tmpzr1t_l9r_go_relaxed.owl dolichol formation|dolichol anabolism|dolichol synthesis|dolichol biosynthesis biological_process owl:Class GO:0019348 biolink:NamedThing dolichol metabolic process The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. tmpzr1t_l9r_go_relaxed.owl dolichol metabolism biological_process owl:Class GO:0007026 biolink:NamedThing negative regulation of microtubule depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol. tmpzr1t_l9r_go_relaxed.owl negative regulation of microtubule disassembly|down regulation of microtubule depolymerization|down-regulation of microtubule depolymerization|microtubule stabilization|downregulation of microtubule depolymerization|microtubule rescue|inhibition of microtubule depolymerization|negative regulation of microtubule catastrophe biological_process owl:Class GO:0102311 biolink:NamedThing 8-hydroxygeraniol dehydrogenase activity Catalysis of the reaction: (6E)-8-hydroxygeraniol + 2 NADP <=> (6E)-8-oxogeranial + 2 NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12961|EC:1.1.1.324|RHEA:32659 molecular_function owl:Class GO:0051140 biolink:NamedThing regulation of NK T cell proliferation Any process that modulates the frequency, rate or extent of natural killer T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of NKT cell proliferation|regulation of NT cell proliferation|regulation of NK T-cell proliferation|regulation of NK T-lymphocyte proliferation|regulation of NK T lymphocyte proliferation|regulation of natural T cell proliferation|regulation of natural killer T cell proliferation biological_process owl:Class GO:1903216 biolink:NamedThing regulation of protein processing involved in protein targeting to mitochondrion Any process that modulates the frequency, rate or extent of protein processing involved in protein targeting to mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial protein processing during import|regulation of mitochondrial processing bf 2014-07-24T10:20:54Z biological_process owl:Class GO:1904998 biolink:NamedThing negative regulation of leukocyte adhesion to arterial endothelial cell Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte adhesion to arterial endothelial cell. tmpzr1t_l9r_go_relaxed.owl down regulation of leukocyte adhesion to arterial endothelial cell|inhibition of leukocyte adhesion to arterial endothelial cell|downregulation of leukocyte adhesion to arterial endothelial cell|down-regulation of leukocyte adhesion to arterial endothelial cell bc 2016-03-01T11:04:57Z biological_process owl:Class GO:1904995 biolink:NamedThing negative regulation of leukocyte adhesion to vascular endothelial cell Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte adhesion to vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl down regulation of leukocyte adhesion to vascular endothelial cell|downregulation of leukocyte adhesion to vascular endothelial cell|inhibition of leukocyte adhesion to vascular endothelial cell|down-regulation of leukocyte adhesion to vascular endothelial cell bc 2016-03-01T10:59:08Z biological_process owl:Class GO:1905280 biolink:NamedThing negative regulation of retrograde transport, endosome to Golgi Any process that stops, prevents or reduces the frequency, rate or extent of retrograde transport, endosome to Golgi. tmpzr1t_l9r_go_relaxed.owl downregulation of retrograde (endosome to Golgi) transport|downregulation of retrograde transport, endosome to Golgi|down regulation of retrograde transport, endosome to Golgi|down-regulation of retrograde (endosome to Golgi) transport|negative regulation of retrograde (endosome to Golgi) transport|inhibition of retrograde (endosome to Golgi) transport|inhibition of retrograde transport, endosome to Golgi|down regulation of retrograde (endosome to Golgi) transport|down-regulation of retrograde transport, endosome to Golgi bf 2016-06-20T12:25:37Z biological_process owl:Class GO:0005247 biolink:NamedThing voltage-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-dependent chloride channel activity|voltage gated chloride channel activity Reactome:R-HSA-2744228 molecular_function owl:Class GO:0008308 biolink:NamedThing voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated ion-selective channel activity|voltage-dependent ion-selective channel activity Reactome:R-HSA-9012374 GO:0022844 molecular_function owl:Class GO:0031959 biolink:NamedThing mineralocorticoid receptor signaling pathway Any series of molecular signals generated as a consequence of a mineralocorticoid binding to its receptor. tmpzr1t_l9r_go_relaxed.owl mineralocorticoid receptor signalling pathway biological_process owl:Class GO:0031958 biolink:NamedThing corticosteroid receptor signaling pathway Any series of molecular signals generated as a consequence of a corticosteroid binding to its receptor. tmpzr1t_l9r_go_relaxed.owl corticosteroid receptor signalling pathway biological_process owl:Class GO:0090731 biolink:NamedThing cellular response to very-low-density lipoprotein particle stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very-low-density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to VLDL particle stimulus tb 2017-01-31T17:10:08Z biological_process owl:Class GO:0046133 biolink:NamedThing pyrimidine ribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside degradation|pyrimidine ribonucleoside catabolism|pyrimidine ribonucleoside breakdown biological_process owl:Class GO:0046135 biolink:NamedThing pyrimidine nucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside catabolism|pyrimidine nucleoside breakdown|pyrimidine nucleoside degradation biological_process owl:Class GO:0060471 biolink:NamedThing cortical granule exocytosis The process of secretion by a cell that results in the release of intracellular molecules contained within a cortical granule by fusion of the vesicle with the plasma membrane of a cell. A cortical granule is a specialized secretory vesicle that is released during egg activation that changes the surface of the egg to prevent polyspermy. tmpzr1t_l9r_go_relaxed.owl cortical reaction|cortical granule release https://github.com/geneontology/go-ontology/issues/13980 biological_process owl:Class GO:0090559 biolink:NamedThing regulation of membrane permeability Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by a membrane. tmpzr1t_l9r_go_relaxed.owl tb 2014-03-27T13:48:35Z biological_process owl:Class GO:1901791 biolink:NamedThing 3-(2,3-dihydroxyphenyl)propanoate catabolic process The chemical reactions and pathways resulting in the breakdown of 3-(2,3-dihydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(2,3-dihydroxyphenyl)propanoate breakdown|3-(2,3-dihydroxyphenyl)propanoate degradation|3-(2,3-dihydroxyphenyl)propanoate catabolism yaf 2013-01-16T11:41:02Z biological_process owl:Class GO:0002449 biolink:NamedThing lymphocyte mediated immunity Any process involved in the carrying out of an immune response by a lymphocyte. tmpzr1t_l9r_go_relaxed.owl cell-mediated immunity|cellular immune response biological_process owl:Class GO:0002443 biolink:NamedThing leukocyte mediated immunity Any process involved in the carrying out of an immune response by a leukocyte. tmpzr1t_l9r_go_relaxed.owl leucocyte mediated immunity|cell-mediated immune response|cellular immune response|immune cell mediated immunity|leucocyte immune effector process|leukocyte immune effector process|immune cell effector process GO:0019723|GO:0042087 biological_process owl:Class GO:1905172 biolink:NamedThing RISC complex binding Binding to a RISC complex. tmpzr1t_l9r_go_relaxed.owl RNA-induced silencing complex binding bf 2016-05-02T19:27:02Z molecular_function owl:Class GO:0036420 biolink:NamedThing extrinsic component of mycolate outer membrane The component of mycolate outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to mycolate outer membrane|extrinsic to MOM|extrinsic to mycomembrane bf 2013-09-05T20:22:02Z cellular_component owl:Class GO:0048041 biolink:NamedThing focal adhesion assembly The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity. tmpzr1t_l9r_go_relaxed.owl adhesion plaque assembly|focal adhesion formation biological_process owl:Class GO:0007044 biolink:NamedThing cell-substrate junction assembly The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate. tmpzr1t_l9r_go_relaxed.owl cell-substrate adherens junction assembly The primary label for merged term was 'cell-substrate adherens junction assembly' GO:0007045. The term was merged into the parent 'cell-substrate junction assembly', because, based on the most recent litarature, 'adherens junction' is always a 'cell-cell junction' (PMID:20571587, PMID:17854762, PMID:21422226, PMID:28096264, PMID:28401269, PMID:26923917). GO:0007045 biological_process owl:Class GO:0003830 biolink:NamedThing beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R. tmpzr1t_l9r_go_relaxed.owl N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III activity|UDP-N-acetyl-D-glucosamine:beta-D-mannosyl-glycoprotein 4-beta-N-acetyl-D-glucosaminyltransferase activity|GnTIII activity|uridine diphosphoacetylglucosamine-glycopeptide beta4-acetylglucosaminyltransferase III|beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity|N-acetylglucosaminyltransferase III activity|beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-glycopeptide beta-4-acetylglucosaminyltransferase III activity MetaCyc:2.4.1.144-RXN|Reactome:R-HSA-975926|EC:2.4.1.144|RHEA:15509 molecular_function owl:Class GO:0008375 biolink:NamedThing acetylglucosaminyltransferase activity Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. tmpzr1t_l9r_go_relaxed.owl GlcNAc transferase activity Reactome:R-HSA-8879117|Reactome:R-HSA-9694656|Reactome:R-HSA-5694487|Reactome:R-HSA-9683648 molecular_function owl:Class GO:0050641 biolink:NamedThing 6-methylsalicylic acid synthase activity Catalysis of the reaction: acetyl-CoA + 3 H(+) + 3 malonyl-CoA + NADPH = 6-methylsalicylate + 3 CO(2) + 4 CoA + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl-reducing, thioester-hydrolysing and cyclizing)|6-MSAS activity|MSAS activity KEGG_REACTION:R07253|MetaCyc:2.3.1.165-RXN|EC:2.3.1.165|RHEA:12240 molecular_function owl:Class GO:1901003 biolink:NamedThing negative regulation of fermentation Any process that stops, prevents or reduces the frequency, rate or extent of fermentation. tmpzr1t_l9r_go_relaxed.owl down-regulation of fermentation|downregulation of fermentation|down regulation of fermentation|inhibition of fermentation al 2012-06-15T08:21:31Z biological_process owl:Class GO:1901863 biolink:NamedThing positive regulation of muscle tissue development Any process that activates or increases the frequency, rate or extent of muscle tissue development. tmpzr1t_l9r_go_relaxed.owl up-regulation of muscle tissue development|activation of muscle tissue development|up regulation of muscle tissue development|upregulation of muscle tissue development yaf 2013-02-01T10:30:57Z biological_process owl:Class GO:0034214 biolink:NamedThing protein hexamerization The formation of a protein hexamer, a macromolecular structure consisting of six noncovalently associated identical or nonidentical subunits. tmpzr1t_l9r_go_relaxed.owl protein hexamer biosynthesis|protein hexamer formation|protein hexamer assembly|protein hexamer biosynthetic process biological_process owl:Class GO:0051259 biolink:NamedThing protein complex oligomerization The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. tmpzr1t_l9r_go_relaxed.owl protein oligomer biosynthesis|protein multimerization|protein oligomer biosynthetic process|protein oligomer assembly|protein oligomer formation|protein oligomerization bf 2011-04-05T09:57:49Z GO:0035786 biological_process owl:Class GO:0008207 biolink:NamedThing C21-steroid hormone metabolic process The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones. tmpzr1t_l9r_go_relaxed.owl C21-steroid hormone metabolism biological_process owl:Class GO:0034754 biolink:NamedThing cellular hormone metabolic process The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030734 biolink:NamedThing polysaccharide O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 1,4-N1-D-glucooligosaccharide = S-adenosyl-L-homocysteine + oligosaccharide containing 6-methyl-D-glucose units. tmpzr1t_l9r_go_relaxed.owl acylpolysacharide 6-methyltransferase activity|S-adenosyl-L-methionine:1,4-alpha-D-glucan 6-O-methyltransferase activity|polysaccharide methyltransferase activity MetaCyc:POLYSACCHARIDE-O-METHYLTRANSFERASE-RXN|EC:2.1.1.18 molecular_function owl:Class GO:0009691 biolink:NamedThing cytokinin biosynthetic process The chemical reactions and pathways resulting in the formation of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. tmpzr1t_l9r_go_relaxed.owl cytokinin biosynthesis|cytokinin anabolism|cytokinin formation|cytokinin synthesis biological_process owl:Class GO:0099025 biolink:NamedThing anchored component of postsynaptic membrane The component of the postsynaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099144 biolink:NamedThing anchored component of synaptic membrane The component of the synaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl dos 2017-05-25T17:25:19Z cellular_component owl:Class GO:1902973 biolink:NamedThing mitotic DNA replication DNA ligation Any DNA ligation involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation involved in mitotic cell cycle DNA replication|DNA ligation involved in mitotic DNA replication jl 2014-05-06T15:20:59Z biological_process owl:Class GO:0070512 biolink:NamedThing positive regulation of histone H4-K20 methylation Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 20 of histone H4. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H4-K20 methylation|upregulation of histone H4-K20 methylation|activation of histone H4-K20 methylation|stimulation of histone H4-K20 methylation|up-regulation of histone H4-K20 methylation biological_process owl:Class GO:0031062 biolink:NamedThing positive regulation of histone methylation Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone methylation|up regulation of histone methylation|upregulation of histone methylation|stimulation of histone methylation|activation of histone methylation biological_process owl:Class GO:0048340 biolink:NamedThing paraxial mesoderm morphogenesis The process in which the anatomical structures of the paraxial mesoderm are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072175 biolink:NamedThing epithelial tube formation The developmental process pertaining to the initial formation of an epithelial tube. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:15:40Z biological_process owl:Class GO:0061457 biolink:NamedThing mesonephric cell migration involved in male gonad development The orderly movement of a cell from the mesonephros to the male gonad, contributing to its development. tmpzr1t_l9r_go_relaxed.owl dph 2012-08-22T17:31:00Z biological_process owl:Class GO:0060516 biolink:NamedThing primary prostatic bud elongation The increase in size of the prostatic bud as it forms. tmpzr1t_l9r_go_relaxed.owl prostate bud elongation involved in prostate morphogenesis|prostate bud elongation biological_process owl:Class GO:0060737 biolink:NamedThing prostate gland morphogenetic growth The differential increase in size or mass of the prostate gland that contributes to the gland attaining its form. tmpzr1t_l9r_go_relaxed.owl prostate gland growth involved in morphogenesis dph 2009-06-15T09:24:40Z biological_process owl:Class GO:2001317 biolink:NamedThing kojic acid biosynthetic process The chemical reactions and pathways resulting in the formation of kojic acid. tmpzr1t_l9r_go_relaxed.owl kojic acid anabolism|C6H6O4 biosynthesis|C6H6O4 biosynthetic process|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|C6H6O4 formation|C6H6O4 synthesis|C6H6O4 anabolism|kojic acid biosynthesis|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|kojic acid synthesis|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|kojic acid formation|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis bf 2012-04-18T09:22:46Z biological_process owl:Class GO:0034309 biolink:NamedThing primary alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it. tmpzr1t_l9r_go_relaxed.owl primary alcohol formation|primary alcohol anabolism|primary alcohol biosynthesis|monohydric alcohol biosynthetic process|primary alcohol synthesis biological_process owl:Class GO:0031594 biolink:NamedThing neuromuscular junction The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential. tmpzr1t_l9r_go_relaxed.owl NMJ|motor endplate Wikipedia:Neuromuscular_junction|NIF_Subcellular:sao1124888485 In vertebrates, the term 'neuromuscular junction' is limited to synapses targeting skeletal muscle fibers - all of which are cholinergic and excitatory. Both inhibitory and excitatory neuromuscular junctions exist in invertebrates, utilizing a range of neurotransmitters including glutamate, GABA and 5-HT. cellular_component owl:Class GO:0043302 biolink:NamedThing positive regulation of leukocyte degranulation Any process that activates or increases the frequency, rate or extent of leukocyte degranulation. tmpzr1t_l9r_go_relaxed.owl up regulation of leukocyte degranulation|up-regulation of leukocyte degranulation|stimulation of leukocyte degranulation|positive regulation of leucocyte degranulation|upregulation of leukocyte degranulation|positive regulation of immune cell degranulation|activation of leukocyte degranulation biological_process owl:Class GO:1990469 biolink:NamedThing Rhino-Deadlock-Cutoff Complex Protein complex found in Drosophila consisting of the gene products of cuff, del and rhi. It regulates the licensing of transcription of dual-strand PIWI interacting RNA (piRNA) source loci by binding to dual-strand-cluster chromatin, probably via the H3K9me3-binding activity of Rhi. Rhi binding brings the putative termination cofactor Cuff in close proximity to the nascent piRNA precursor transcript which it appears to protect from degradation. tmpzr1t_l9r_go_relaxed.owl rhi-del-cuff complex|RDC complex An example of this is cuff in Drosophila melanogaster (Q9V629) in PMID:24906153. bhm 2014-08-29T14:08:37Z cellular_component owl:Class GO:0046647 biolink:NamedThing negative regulation of gamma-delta T cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of gamma-delta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of gamma-delta T cell proliferation|downregulation of gamma-delta T cell proliferation|down regulation of gamma-delta T cell proliferation|negative regulation of gamma-delta T-lymphocyte proliferation|negative regulation of gamma-delta T lymphocyte proliferation|negative regulation of gamma-delta T-cell proliferation|down-regulation of gamma-delta T cell proliferation biological_process owl:Class GO:0016877 biolink:NamedThing ligase activity, forming carbon-sulfur bonds Catalysis of the joining of two molecules via a carbon-sulfur bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl ligase activity, forming carbon-sulphur bonds EC:6.2.-.- molecular_function owl:Class GO:0031775 biolink:NamedThing lutropin-choriogonadotropic hormone receptor binding Binding to a lutropin-choriogonadotropic hormone receptor. tmpzr1t_l9r_go_relaxed.owl lutropin-choriogonadotropic hormone receptor ligand molecular_function owl:Class GO:0032244 biolink:NamedThing positive regulation of nucleoside transport Any process that activates or increases the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of nucleoside transport|activation of nucleoside transport|up regulation of nucleoside transport|up-regulation of nucleoside transport|upregulation of nucleoside transport biological_process owl:Class GO:0032241 biolink:NamedThing positive regulation of nucleobase-containing compound transport Any process that activates or increases the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl activation of nucleobase, nucleoside, nucleotide and nucleic acid transport|stimulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|up-regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|up regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|upregulation of nucleobase, nucleoside, nucleotide and nucleic acid transport biological_process owl:Class GO:0009227 biolink:NamedThing nucleotide-sugar catabolic process The chemical reactions and pathways resulting in the breakdown of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl nucleotide-sugar catabolism|nucleotide-sugar degradation|nucleotide-sugar breakdown biological_process owl:Class GO:0045990 biolink:NamedThing carbon catabolite regulation of transcription A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl regulation of transcription by carbon catabolites biological_process owl:Class GO:0043096 biolink:NamedThing purine nucleobase salvage Any process that generates purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from derivatives of them without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl purine base salvage biological_process owl:Class GO:0043101 biolink:NamedThing purine-containing compound salvage Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl purine salvage biological_process owl:Class GO:0046049 biolink:NamedThing UMP metabolic process The chemical reactions and pathways involving UMP, uridine monophosphate. tmpzr1t_l9r_go_relaxed.owl UMP metabolism biological_process owl:Class GO:0015577 biolink:NamedThing galactitol transmembrane transporter activity Enables the transfer of a galactitol from one side of a membrane to the other. Galactitol is the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose. tmpzr1t_l9r_go_relaxed.owl galactitol permease activity RHEA:33143 GO:0015588 molecular_function owl:Class GO:0015166 biolink:NamedThing polyol transmembrane transporter activity Enables the transfer of a polyol from one side of a membrane to the other. A polyol is any polyhydric alcohol. tmpzr1t_l9r_go_relaxed.owl sugar/polyol channel activity Reactome:R-HSA-429571 molecular_function owl:Class GO:0051352 biolink:NamedThing negative regulation of ligase activity Any process that stops or reduces the rate of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl inhibition of ligase activity|down regulation of ligase activity|down-regulation of ligase activity|ligase inhibitor|downregulation of ligase activity biological_process owl:Class GO:0007223 biolink:NamedThing Wnt signaling pathway, calcium modulating pathway The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC). tmpzr1t_l9r_go_relaxed.owl Wnt-activated signaling pathway, calcium modulating pathway|frizzled-2 signalling pathway|non-canonical Wnt signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway|frizzled-2 signaling pathway biological_process owl:Class GO:0035567 biolink:NamedThing non-canonical Wnt signaling pathway The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via effectors other than beta-catenin. tmpzr1t_l9r_go_relaxed.owl non-canonical Wnt receptor signalling pathway|non-canonical Wnt-activated signaling pathway|non-canonical Wnt receptor signaling pathway|beta-catenin-independent Wnt receptor signaling pathway This term should only be used when Wnt receptor signaling occurs via a beta-catenin-independent route but the downstream effectors are unknown. If the downstream effectors are known, consider instead annotating to one of the children, or requesting a new term. bf 2010-07-23T02:26:01Z biological_process owl:Class GO:0021961 biolink:NamedThing posterior commissure morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the midbrain towards target cells in the diencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046765 biolink:NamedThing viral budding from nuclear membrane A viral budding that starts with formation of a membrane curvature in the host nuclear membrane. tmpzr1t_l9r_go_relaxed.owl virus budding from nuclear membrane during viral capsid envelopment|virus budding from nuclear membrane by viral capsid envelopment|virus budding from nuclear membrane|viral budding from nuclear membrane by viral capsid envelopment|viral budding from nuclear membrane during viral capsid envelopment|nuclear membrane viral budding|nuclear membrane viral budding during viral capsid envelopment GO:0046749 biological_process owl:Class GO:0046755 biolink:NamedThing viral budding A viral process by which enveloped viruses acquire a host-derived membrane enriched in viral proteins to form their external envelope. The process starts when nucleocapsids, assembled or in the process of being built, induce formation of a membrane curvature in the host plasma or organelle membrane and wrap up in the forming bud. The process ends when the bud is eventually pinched off by membrane scission to release the enveloped particle into the lumenal or extracellular space. tmpzr1t_l9r_go_relaxed.owl virus budding|virion budding|viral capsid envelopment VZ:1947 GO:0046744 biological_process owl:Class GO:0010637 biolink:NamedThing negative regulation of mitochondrial fusion Any process that decreases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102815 biolink:NamedThing caffeoyl-CoA:delphinidin-3,5-diglucoside 5-O-glucoside-6-O-hydroxycinnamoyltransferase activity Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside-5-O-beta-D-glucoside betaine + caffeoyl-CoA <=> delphinidin 3-O-glucosyl-5-O-caffeoylglucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.153|MetaCyc:RXN-8233 molecular_function owl:Class GO:0070479 biolink:NamedThing nuclear-transcribed mRNA catabolic process, 5'-3' exonucleolytic nonsense-mediated decay The chemical reactions and pathways resulting in the breakdown of the nuclear-transcribed mRNA transcript body of an mRNA in which an amino-acid codon has changed to a nonsense codon; occurs when the 5' end is not protected by a 5'-cap; degradation proceeds in the 5' to 3' direction. tmpzr1t_l9r_go_relaxed.owl 5'-3' nonsense-mediated decay|nuclear-transcribed mRNA catabolism, 5'-3' exonucleolytic nonsense-mediated decay|nuclear-transcribed mRNA breakdown, 5'-3' exonucleolytic nonsense-mediated decay|5'-3' nonsense-mediated mRNA decay|5'-3' NMD|nuclear-transcribed mRNA degradation, 5'-3' exonucleolytic nonsense-mediated decay biological_process owl:Class GO:0000184 biolink:NamedThing nuclear-transcribed mRNA catabolic process, nonsense-mediated decay The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. tmpzr1t_l9r_go_relaxed.owl mRNA catabolic process, nonsense-mediated|nuclear mRNA catabolic process, nonsense-mediated decay|mRNA breakdown, nonsense-mediated decay|mRNA degradation, nonsense-mediated decay|mRNA catabolism, nonsense-mediated|nonsense-mediated mRNA decay Wikipedia:Nonsense-mediated_mRNA_decay|Wikipedia:Nonsense-mediated_decay biological_process owl:Class GO:0060885 biolink:NamedThing clearance of cells from fusion plate by apoptotic process Any apoptotic process that contributes to the shaping of the semicircular canal by removing cells in the fusion plate, forming the loops of the canals. tmpzr1t_l9r_go_relaxed.owl clearance of cells from fusion plate by apoptosis dph 2009-08-13T12:30:17Z biological_process owl:Class GO:0050228 biolink:NamedThing pterin deaminase activity Catalysis of the reaction: 2-amino-4-hydroxypteridine + H2O = 2,4-dihydroxypteridine + NH3. tmpzr1t_l9r_go_relaxed.owl acrasinase activity|2-amino-4-hydroxypteridine aminohydrolase activity MetaCyc:PTERIN-DEAMINASE-RXN|EC:3.5.4.11|RHEA:11904 molecular_function owl:Class GO:0010095 biolink:NamedThing specification of petal identity The process in which a floral organ primordium acquires petal identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010093 biolink:NamedThing specification of floral organ identity The process in which the identity of a floral organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070288 biolink:NamedThing ferritin complex A protein complex that binds iron and acts as a major iron storage system. Intracellular and extracellular ferritin complexes have different ratios of two types of ferritin monomer, the L (light) chain and H (heavy) chain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050772 biolink:NamedThing positive regulation of axonogenesis Any process that activates or increases the frequency, rate or extent of axonogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of axonogenesis|upregulation of axonogenesis|up-regulation of axonogenesis|stimulation of axonogenesis|activation of axonogenesis biological_process owl:Class GO:0098945 biolink:NamedThing intrinsic component of presynaptic active zone membrane The component of the presynaptic active zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to presynaptic acive zone membrane cellular_component owl:Class GO:0030927 biolink:NamedThing manganese incorporation into metallo-oxygen cluster via bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide The incorporation of manganese into a 4Mn-Ca-4O complex by bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide as in the photosystem II catalytic site. tmpzr1t_l9r_go_relaxed.owl RESID:AA0366 biological_process owl:Class GO:0030924 biolink:NamedThing manganese incorporation into metallo-oxygen cluster The incorporation of manganese into a metallo-oxygen cluster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900960 biolink:NamedThing negative regulation of 17-methylnonadec-1-ene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of 17-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of 17-methylnonadec-1-ene metabolic process|down-regulation of 17-methylnonadec-1-ene metabolism|down regulation of 17-methylnonadec-1-ene metabolism|downregulation of 17-methylnonadec-1-ene metabolic process|down-regulation of 17-methylnonadec-1-ene metabolic process|negative regulation of 17-methylnonadec-1-ene metabolism|inhibition of 17-methylnonadec-1-ene metabolic process|inhibition of 17-methylnonadec-1-ene metabolism|downregulation of 17-methylnonadec-1-ene metabolism tt 2012-06-14T03:29:51Z biological_process owl:Class GO:0021755 biolink:NamedThing eurydendroid cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature eurydendroid cell. Differentiation includes the processes involved in commitment of a neuroblast to a eurydendroid cell fate. A eurydendroid cell is an efferent neuron found in the cerebellar cortex of teleosts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007557 biolink:NamedThing regulation of juvenile hormone biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl regulation of juvenile hormone synthesis|regulation of juvenile hormone anabolism|regulation of juvenile hormone formation|regulation of juvenile hormone biosynthesis biological_process owl:Class GO:0031017 biolink:NamedThing exocrine pancreas development The process whose specific outcome is the progression of the exocrine pancreas over time, from its formation to the mature structure. The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090614 biolink:NamedThing 5'-methylthioadenosine deaminase activity Catalysis of the reaction: 5'methyl thioadenosine + H2O = 5'methyl thioinosine + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.4.31|RHEA:25025 tb 2014-10-23T15:59:38Z molecular_function owl:Class GO:0090627 biolink:NamedThing plant epidermal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a plant epidermal cell. tmpzr1t_l9r_go_relaxed.owl tb 2015-02-05T14:23:28Z biological_process owl:Class GO:1902748 biolink:NamedThing positive regulation of lens fiber cell differentiation Any process that activates or increases the frequency, rate or extent of lens fiber cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of lens fibre cell differentiation|activation of lens fiber cell differentiation|upregulation of lens fiber cell differentiation|activation of lens fibre cell differentiation|up-regulation of lens fiber cell differentiation|up regulation of lens fibre cell differentiation|up-regulation of lens fibre cell differentiation|up regulation of lens fiber cell differentiation|upregulation of lens fibre cell differentiation mr 2014-03-03T23:20:12Z biological_process owl:Class GO:1904570 biolink:NamedThing negative regulation of selenocysteine incorporation Any process that stops, prevents or reduces the frequency, rate or extent of selenocysteine incorporation. tmpzr1t_l9r_go_relaxed.owl down-regulation of selenocysteine incorporation|down regulation of selenocysteine incorporation|downregulation of selenocysteine incorporation|inhibition of selenocysteine incorporation sl 2015-08-19T17:26:44Z biological_process owl:Class GO:0045900 biolink:NamedThing negative regulation of translational elongation Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation. tmpzr1t_l9r_go_relaxed.owl downregulation of translational elongation|inhibition of translational elongation|down-regulation of translational elongation|down regulation of translational elongation biological_process owl:Class GO:0018672 biolink:NamedThing anthranilate 3-monooxygenase (deaminating) activity Catalysis of the reaction: anthranilate + 2 H(+) + NADPH + O(2) = 2,3-dihydroxybenzoate + NADP(+) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl anthranilate 2,3-dioxygenase (deaminating)|anthranilate hydroxylase activity|anthranilate 2,3-hydroxylase (deaminating) activity|anthranilate,NADPH:oxygen oxidoreductase (3-hydroxylating, deaminating)|anthranilate hydroxylase (deaminating) activity RHEA:21236|KEGG_REACTION:R00980|EC:1.14.13.35|MetaCyc:1.14.13.35-RXN|UM-BBD_reactionID:r0578 molecular_function owl:Class GO:0042166 biolink:NamedThing acetylcholine binding Binding to acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000288 biolink:NamedThing nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability. tmpzr1t_l9r_go_relaxed.owl mRNA breakdown, deadenylation-dependent decay|mRNA degradation, deadenylation-dependent decay|deadenylation-dependent mRNA decay|nuclear mRNA catabolic process, deadenylation-dependent decay|mRNA catabolic process, deadenylylation-dependent|mRNA catabolic process, deadenylation-dependent|mRNA catabolism, deadenylation-dependent|mRNA catabolism, deadenylylation-dependent https://github.com/geneontology/go-ontology/issues/20568 biological_process owl:Class GO:0048866 biolink:NamedThing stem cell fate specification The process in which a cell becomes capable of differentiating autonomously into a stem cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001708 biolink:NamedThing cell fate specification The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010062 biolink:NamedThing negative regulation of trichoblast fate specification Any process that suppresses trichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl inhibition of trichoblast fate|down regulation of trichoblast fate|downregulation of trichoblast fate|down-regulation of trichoblast fate biological_process owl:Class GO:1903889 biolink:NamedThing negative regulation of plant epidermal cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of plant epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of plant epidermal cell differentiation|down-regulation of plant epidermal cell differentiation|inhibition of plant epidermal cell differentiation|downregulation of plant epidermal cell differentiation tb 2015-02-06T22:29:52Z biological_process owl:Class GO:1900799 biolink:NamedThing cordyol C biosynthetic process The chemical reactions and pathways resulting in the formation of cordyol C. tmpzr1t_l9r_go_relaxed.owl cordyol C synthesis|cordyol C formation|cordyol C biosynthesis|cordyol C anabolism di 2012-06-04T09:48:17Z biological_process owl:Class GO:1903555 biolink:NamedThing regulation of tumor necrosis factor superfamily cytokine production Any process that modulates the frequency, rate or extent of tumor necrosis factor superfamily cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of TNFSF cytokine production|regulation of TNF superfamily production pga 2014-10-21T10:26:05Z biological_process owl:Class GO:1900990 biolink:NamedThing scopolamine catabolic process The chemical reactions and pathways resulting in the breakdown of scopolamine. tmpzr1t_l9r_go_relaxed.owl scopolamine degradation|scopolamine catabolism|scopolamine breakdown yaf 2012-06-14T09:48:00Z biological_process owl:Class GO:1904781 biolink:NamedThing positive regulation of protein localization to centrosome Any process that activates or increases the frequency, rate or extent of protein localization to centrosome. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localization to centrosome|activation of protein localisation to centrosome|up-regulation of protein localisation to centrosome|upregulation of protein localisation to centrosome|up regulation of protein localization to centrosome|upregulation of protein localization to centrosome|up regulation of protein localisation to centrosome|positive regulation of protein localisation to centrosome|activation of protein localization to centrosome An example is cdk-2 in C. elegans (UniProt ID O61847) in PMID:17115027 (inferred from mutant phenotype). es 2015-10-30T11:54:53Z biological_process owl:Class GO:0046639 biolink:NamedThing negative regulation of alpha-beta T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of alpha-beta T cell differentiation|negative regulation of alpha-beta T lymphocyte differentiation|negative regulation of alpha-beta T cell development|negative regulation of alpha-beta T-cell differentiation|inhibition of alpha-beta T cell differentiation|down regulation of alpha-beta T cell differentiation|down-regulation of alpha-beta T cell differentiation|negative regulation of alpha-beta T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045581 biolink:NamedThing negative regulation of T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of T cell development|down regulation of T cell differentiation|negative regulation of T-cell differentiation|negative regulation of T lymphocyte differentiation|negative regulation of T-lymphocyte differentiation|down-regulation of T cell differentiation|downregulation of T cell differentiation|inhibition of T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0098708 biolink:NamedThing glucose import across plasma membrane The directed movement of glucose from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl glucose import into cell|high affinity glucose import al 2012-12-06T14:54:07Z GO:0061490|GO:1990821 biological_process owl:Class GO:0140271 biolink:NamedThing hexose import across plasma membrane The directed movement of hexose from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-10-01T08:49:49Z biological_process owl:Class GO:0098799 biolink:NamedThing outer mitochondrial membrane protein complex Any protein complex that is part of the outer mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140216 biolink:NamedThing negative regulation of D-aspartate import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of the directed import of D-aspartate from the extracellular region across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15041 pg 2018-04-11T15:43:25Z biological_process owl:Class GO:0140060 biolink:NamedThing axon arborization The process in which the terminal anatomical structures of an axon are generated and organized into branches of specialised projections, or boutons. An axon is the long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminal branches. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-12T15:17:22Z biological_process owl:Class GO:0140058 biolink:NamedThing neuron projection arborization The process in which the anatomical structures of a neuron projection are generated and organized into branches. A neuron projection is any process extending from a neural cell, such as axons or dendrites. tmpzr1t_l9r_go_relaxed.owl branching morphogenesis of a neuron projection|neuron projection branching|neurite branching|neurite arborization|branching morphogenesis of a neurite pg 2017-07-12T12:25:31Z biological_process owl:Class GO:0016891 biolink:NamedThing endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl EC:3.1.26.- molecular_function owl:Class GO:0016893 biolink:NamedThing endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks to yield 5'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl endoribonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters|5'-endonuclease activity EC:3.1.30.- Note that this activity can catalyze cleavage of DNA or RNA. molecular_function owl:Class GO:0070927 biolink:NamedThing negative regulation of ATP:ADP antiporter activity Any process that stops or reduces the activity of an ATP:ADP antiporter. tmpzr1t_l9r_go_relaxed.owl downregulation of ATP:ADP antiporter activity|inhibition of ATP:ADP antiporter activity|down-regulation of ATP:ADP antiporter activity|down regulation of ATP:ADP antiporter activity mah 2009-09-16T02:58:02Z biological_process owl:Class GO:0070926 biolink:NamedThing regulation of ATP:ADP antiporter activity Any process that modulates the activity of an ATP:ADP antiporter. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-16T02:56:35Z biological_process owl:Class GO:0031984 biolink:NamedThing organelle subcompartment A compartment that consists of a lumen and an enclosing membrane, and is part of an organelle. tmpzr1t_l9r_go_relaxed.owl suborganelle compartment Note that this term refers to membrane-bounded compartments that are not considered organelles in their own right, but form parts of larger organelles. cellular_component owl:Class GO:0031406 biolink:NamedThing carboxylic acid binding Binding to a carboxylic acid, an organic acid containing one or more carboxyl (COOH) groups or anions (COO-). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903571 biolink:NamedThing negative regulation of protein kinase D signaling Any process that stops, prevents or reduces the frequency, rate or extent of protein kinase D signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein kinase D signaling cascade|down regulation of PKD signaling cascade|negative regulation of PKD signal transduction|inhibition of protein kinase D signaling cascade|inhibition of PKD signal transduction|downregulation of protein kinase D signal transduction|inhibition of protein kinase D signal transduction|downregulation of protein kinase D signaling cascade|negative regulation of protein kinase D signalling cascade|down-regulation of protein kinase D signal transduction|downregulation of PKD signaling cascade|downregulation of protein kinase D signaling|down-regulation of PKD signaling cascade|down regulation of PKD signal transduction|down-regulation of protein kinase D signaling cascade|down regulation of protein kinase D signalling cascade|downregulation of PKD signal transduction|down-regulation of PKD signal transduction|inhibition of PKD signaling cascade|down regulation of protein kinase D signaling cascade|negative regulation of PKD signaling cascade|down-regulation of protein kinase D signalling cascade|down regulation of protein kinase D signaling|down-regulation of protein kinase D signaling|downregulation of protein kinase D signalling cascade|inhibition of protein kinase D signalling cascade|down regulation of protein kinase D signal transduction|negative regulation of protein kinase D signal transduction|inhibition of protein kinase D signaling rl 2014-10-27T15:18:10Z biological_process owl:Class GO:0046045 biolink:NamedThing TMP catabolic process The chemical reactions and pathways resulting in the breakdown of TMP, ribosylthymine monophosphate. tmpzr1t_l9r_go_relaxed.owl TMP breakdown|TMP degradation|TMP catabolism biological_process owl:Class GO:0046044 biolink:NamedThing TMP metabolic process The chemical reactions and pathways involving TMP, ribosylthymine monophosphate. tmpzr1t_l9r_go_relaxed.owl TMP metabolism biological_process owl:Class GO:0099616 biolink:NamedThing extrinsic component of matrix side of mitochondrial inner membrane The component of the matrix side of the mitochondrial inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019775 biolink:NamedThing FAT10 transferase activity Catalysis of the transfer of FAT10 from one protein to another via the reaction X-FAT10 + Y --> Y-FAT10 + X, where both X-FAT10 and Y-FAT10 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl FAT10 conjugating enzyme activity molecular_function owl:Class GO:0032480 biolink:NamedThing negative regulation of type I interferon production Any process that stops, prevents, or reduces the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl inhibition of type I interferon production|down regulation of type I interferon production|downregulation of type I interferon production|negative regulation of type I IFN production|down-regulation of type I interferon production biological_process owl:Class GO:1902425 biolink:NamedThing positive regulation of attachment of mitotic spindle microtubules to kinetochore Any process that activates or increases the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation. tmpzr1t_l9r_go_relaxed.owl activation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|up-regulation of attachment of spindle microtubules to kinetochore during mitosis|up regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|upregulation of attachment of spindle microtubules to kinetochore during mitosis|upregulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|positive regulation of attachment of spindle microtubules to kinetochore during mitosis|positive regulation of mitotic bipolar attachment|up regulation of attachment of spindle microtubules to kinetochore during mitosis|up regulation of attachment of spindle microtubules to mitotic chromosome|up-regulation of mitotic bipolar attachment|upregulation of attachment of spindle microtubules to mitotic chromosome|positive regulation of attachment of spindle microtubules to mitotic chromosome|activation of attachment of spindle microtubules to kinetochore during mitosis|activation of attachment of spindle microtubules to mitotic chromosome|positive regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|activation of attachment of spindle microtubules to kinetochore involved in mitosis|upregulation of attachment of spindle microtubules to kinetochore involved in mitosis|positive regulation of attachment of spindle microtubules to kinetochore involved in mitosis|up-regulation of attachment of spindle microtubules to kinetochore involved in mitosis|activation of mitotic bipolar attachment|up-regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|up-regulation of attachment of spindle microtubules to mitotic chromosome|up regulation of attachment of spindle microtubules to kinetochore involved in mitosis|up regulation of mitotic bipolar attachment|upregulation of mitotic bipolar attachment vw 2013-09-19T10:33:55Z biological_process owl:Class GO:0051987 biolink:NamedThing positive regulation of attachment of spindle microtubules to kinetochore Any process that activates or increases the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore. tmpzr1t_l9r_go_relaxed.owl upregulation of attachment of spindle microtubules to kinetochore|up-regulation of attachment of spindle microtubules to kinetochore|stimulation of attachment of spindle microtubules to kinetochore|up regulation of attachment of spindle microtubules to kinetochore|activation of attachment of spindle microtubules to kinetochore biological_process owl:Class GO:0042415 biolink:NamedThing norepinephrine metabolic process The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl levarterenol metabolism|noradrenaline metabolism|noradrenaline metabolic process|levarterenol metabolic process|norepinephrine metabolism biological_process owl:Class GO:0006584 biolink:NamedThing catecholamine metabolic process The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. tmpzr1t_l9r_go_relaxed.owl catecholamine metabolism biological_process owl:Class GO:1902801 biolink:NamedThing regulation of siRNA-independent facultative heterochromatin assembly Any process that modulates the frequency, rate or extent of siRNA-independent facultative heterochromatin assembly. tmpzr1t_l9r_go_relaxed.owl regulation of heterochromatin island formation|regulation of heterochromatin island assembly https://github.com/geneontology/go-ontology/issues/22326 mah 2014-03-25T14:44:48Z biological_process owl:Class GO:1902898 biolink:NamedThing fatty acid methyl ester metabolic process The chemical reactions and pathways involving fatty acid methyl ester. tmpzr1t_l9r_go_relaxed.owl fatty acid methyl ester metabolism|FAME metabolic process tt 2014-04-11T03:08:34Z biological_process owl:Class GO:0098863 biolink:NamedThing nuclear migration by microtubule mediated pushing forces The directed movement of the nucleus by pushing forces exerted by polymerization of backward-extending microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032736 biolink:NamedThing positive regulation of interleukin-13 production Any process that activates or increases the frequency, rate, or extent of interleukin-13 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-13 secretion|upregulation of interleukin-13 production|up regulation of interleukin-13 production|up-regulation of interleukin-13 production|activation of interleukin-13 production|stimulation of interleukin-13 production|positive regulation of IL-13 production|positive regulation of interleukin-13 biosynthetic process GO:0045368|GO:2000667 biological_process owl:Class GO:0052883 biolink:NamedThing tyrosine ammonia-lyase activity Catalysis of the reaction: L-tyrosine = NH(4)(+) + trans-4-coumarate. tmpzr1t_l9r_go_relaxed.owl L-tyrosine ammonia-lyase activity|TAL activity|tyrase activity EC:4.3.1.23|EC:4.3.1.25|RHEA:24906 molecular_function owl:Class GO:0072324 biolink:NamedThing ascus epiplasm Ascus cytoplasm that is not packaged into ascospores. tmpzr1t_l9r_go_relaxed.owl Note that this term is an is_a child of 'cell part' because the epiplasm is extracellular to the spore (each of which is a cell) but within the ascus structure, and originated from cytoplasm. mah 2010-10-28T04:37:46Z cellular_component owl:Class GO:0075253 biolink:NamedThing positive regulation of uredospore formation Any process that activates, maintains or increases the frequency, rate or extent of uredospore formation, a process in which an asexual, dikaryotic, often rusty-colored spore, is formed in a structure called a uredinium. tmpzr1t_l9r_go_relaxed.owl positive regulation of ureidospore formation biological_process owl:Class GO:0071994 biolink:NamedThing phytochelatin transmembrane transport The process in which a phytochelatin is transported across a membrane. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. tmpzr1t_l9r_go_relaxed.owl phytochelatin membrane transport|cadystin transmembrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-10-25T01:58:50Z biological_process owl:Class GO:0071993 biolink:NamedThing phytochelatin transport The directed movement of a phytochelatin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. tmpzr1t_l9r_go_relaxed.owl cadystin transport mah 2010-10-25T01:57:55Z biological_process owl:Class GO:0015883 biolink:NamedThing FAD transport The directed movement of flavin-adenine dinucleotide (FAD) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form. tmpzr1t_l9r_go_relaxed.owl flavin adenine dinucleotide transport|flavin-adenine dinucleotide transport biological_process owl:Class GO:0045132 biolink:NamedThing meiotic chromosome segregation The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010852 biolink:NamedThing cyclase inhibitor activity Decreases the activity of an enzyme that catalyzes a ring closure reaction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002445 biolink:NamedThing type II hypersensitivity An inflammatory response resulting in cell death or dysfunction mediated by activation of the classical complement pathway or induction of effector cell phagocytosis, cytolysis mechanisms via complement or Fc receptors following the binding of antibodies to cell surface antigens on a target cell, or mediated by the direct binding of antibody to cellular receptors. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Type_II_hypersensitivity biological_process owl:Class GO:0016064 biolink:NamedThing immunoglobulin mediated immune response An immune response mediated by immunoglobulins, whether cell-bound or in solution. tmpzr1t_l9r_go_relaxed.owl antibody-mediated immune response biological_process owl:Class GO:0032416 biolink:NamedThing negative regulation of sodium:proton antiporter activity Any process that stops or reduces the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl downregulation of sodium:hydrogen antiporter activity|inhibition of sodium:hydrogen antiporter activity|negative regulation of sodium:hydrogen antiporter activity|down regulation of sodium:hydrogen antiporter activity|down-regulation of sodium:hydrogen antiporter activity biological_process owl:Class GO:2000650 biolink:NamedThing negative regulation of sodium ion transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of sodium transporter activity yaf 2011-04-28T08:42:57Z biological_process owl:Class GO:0110162 biolink:NamedThing regulation of mitotic spindle elongation (spindle phase three) Any process that modulates the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase three). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:26:01Z biological_process owl:Class GO:0009882 biolink:NamedThing blue light photoreceptor activity The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009881 biolink:NamedThing photoreceptor activity The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. tmpzr1t_l9r_go_relaxed.owl UV-sensitive opsin|opsin|long-wave-sensitive opsin|blue-sensitive opsin|short-wave-sensitive opsin|violet-sensitive opsin|red-sensitive opsin|green-sensitive opsin molecular_function owl:Class GO:1903697 biolink:NamedThing negative regulation of microvillus assembly Any process that stops, prevents or reduces the frequency, rate or extent of microvillus assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of microvillus assembly|down-regulation of microvillus biogenesis|down regulation of microvillus biogenesis|down regulation of microvillus assembly|downregulation of microvillus assembly|inhibition of microvillus biogenesis|negative regulation of microvillus biogenesis|downregulation of microvillus biogenesis|inhibition of microvillus assembly als 2014-12-03T11:45:08Z biological_process owl:Class GO:0120033 biolink:NamedThing negative regulation of plasma membrane bounded cell projection assembly Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane bounded cell projection assembly. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-26T04:34:31Z biological_process owl:Class GO:0007206 biolink:NamedThing phospholipase C-activating G protein-coupled glutamate receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled glutamate receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|activation of phospholipase C activity by G-protein coupled glutamate receptor signaling pathway|metabotropic glutamate receptor, phospholipase C activating pathway|activation of phospholipase C activity by metabotropic glutamate receptor signalling pathway|phospholipase C-activating G-protein coupled glutamate receptor signaling pathway biological_process owl:Class GO:0007216 biolink:NamedThing G protein-coupled glutamate receptor signaling pathway A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl metabotropic glutamate receptor signalling pathway|metabotropic glutamate receptor signaling pathway|G-protein coupled glutamate receptor signaling pathway biological_process owl:Class GO:0043035 biolink:NamedThing chromatin insulator sequence binding Interacting selectively and non-covalently and stoichiometrically with a chromatin insulator sequence, a DNA sequence that prevents enhancer-mediated activation or repression of transcription. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031490 biolink:NamedThing chromatin DNA binding Binding to DNA that is assembled into chromatin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010449 biolink:NamedThing root meristem growth The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035266 biolink:NamedThing meristem growth The increase in size or mass of a meristem, a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004655 biolink:NamedThing porphobilinogen synthase activity Catalysis of the reaction: 2 5-aminolevulinate = 2 H(2)O + H(+) + porphobilinogen. tmpzr1t_l9r_go_relaxed.owl delta-aminolevulinic acid dehydratase activity|5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing)|aminolevulinate dehydratase activity|5-levulinic acid dehydratase activity|delta-aminolevulinic dehydratase activity|5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing; porphobilinogen-forming)|delta-aminolevulinic acid dehydrase activity|aminolevulinic dehydratase activity|delta-aminolevulinate dehydratase activity MetaCyc:PORPHOBILSYNTH-RXN|KEGG_REACTION:R00036|RHEA:24064|Reactome:R-HSA-189439|EC:4.2.1.24 molecular_function owl:Class GO:1903319 biolink:NamedThing positive regulation of protein maturation Any process that activates or increases the frequency, rate or extent of protein maturation. tmpzr1t_l9r_go_relaxed.owl up regulation of protein maturation|upregulation of protein maturation|activation of protein maturation|up-regulation of protein maturation vw 2014-08-18T12:59:23Z biological_process owl:Class GO:0015630 biolink:NamedThing microtubule cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000181 biolink:NamedThing negative regulation of blood vessel morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of blood vessel morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T12:46:31Z biological_process owl:Class GO:0070407 biolink:NamedThing oxidation-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the oxidation of one or more amino acid residues in the protein. tmpzr1t_l9r_go_relaxed.owl oxidized protein catabolic process|oxidation-dependent proteolysis|oxidation-dependent protein breakdown|oxidation-dependent protein degradation|oxidation-dependent protein catabolism biological_process owl:Class GO:0019941 biolink:NamedThing modification-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein. tmpzr1t_l9r_go_relaxed.owl protein degradation tagging activity|modification-initiated protein catabolic process|modification-dependent protein breakdown|protein-ligand-dependent protein catabolism|modification-initiated proteolysis|modification-dependent protein degradation|protein-ligand-dependent protein catabolic process|modification-initiated protein catabolism|modification-dependent proteolysis|modification-dependent protein catabolism biological_process owl:Class GO:0048003 biolink:NamedThing antigen processing and presentation of lipid antigen via MHC class Ib The process in which an antigen-presenting cell expresses lipid antigen in association with an MHC class Ib protein complex on its cell surface, including lipid extraction, degradation, and transport steps for the lipid antigen both prior to and following assembly with the MHC protein complex. The lipid antigen may originate from an endogenous or exogenous source of lipid. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family. tmpzr1t_l9r_go_relaxed.owl lipid antigen processing and presentation via MHC class Ib|antigen presentation, lipid antigen biological_process owl:Class GO:1900711 biolink:NamedThing negative regulation of tensidol B biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of tensidol B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of tensidol B biosynthetic process|downregulation of tensidol B anabolism|inhibition of tensidol B biosynthetic process|down-regulation of tensidol B biosynthesis|inhibition of tensidol B biosynthesis|down regulation of tensidol B biosynthesis|down-regulation of tensidol B biosynthetic process|down-regulation of tensidol B synthesis|inhibition of tensidol B formation|inhibition of tensidol B anabolism|negative regulation of tensidol B biosynthesis|downregulation of tensidol B synthesis|down regulation of tensidol B formation|downregulation of tensidol B biosynthetic process|down-regulation of tensidol B formation|downregulation of tensidol B formation|negative regulation of tensidol B formation|down-regulation of tensidol B anabolism|negative regulation of tensidol B anabolism|down regulation of tensidol B anabolism|down regulation of tensidol B synthesis|downregulation of tensidol B biosynthesis|negative regulation of tensidol B synthesis|inhibition of tensidol B synthesis di 2012-05-22T05:03:16Z biological_process owl:Class GO:0022889 biolink:NamedThing serine transmembrane transporter activity Enables the transfer of serine from one side of a membrane to the other. Serine is 2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061928 biolink:NamedThing glutathione specific gamma-glutamylcyclotransferase activity Catalysis of the reaction: glutathione = 5-oxoproline + L-cysteinylglycine. tmpzr1t_l9r_go_relaxed.owl RHEA:47724|EC:4.3.2.7 dph 2017-08-29T14:55:30Z molecular_function owl:Class GO:0016842 biolink:NamedThing amidine-lyase activity Catalysis of the release of amides or amidines by the cleavage of a carbon-nitrogen bond or the reverse reaction with an amide or amidine as a substrate. tmpzr1t_l9r_go_relaxed.owl EC:4.3.2.- molecular_function owl:Class GO:1900337 biolink:NamedThing negative regulation of methane biosynthetic process from carbon monoxide Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from carbon monoxide. tmpzr1t_l9r_go_relaxed.owl down-regulation of methane biosynthetic process from carbon monoxide|down regulation of methane biosynthetic process from carbon monoxide|downregulation of methane biosynthetic process from carbon monoxide|inhibition of methane biosynthetic process from carbon monoxide tt 2012-04-06T02:03:24Z biological_process owl:Class GO:1902024 biolink:NamedThing L-histidine transport The directed movement of a L-histidine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl kmv 2013-03-27T16:09:15Z biological_process owl:Class GO:1902022 biolink:NamedThing L-lysine transport The directed movement of a L-lysine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl kmv 2013-03-27T16:09:06Z biological_process owl:Class GO:0035730 biolink:NamedThing S-nitrosoglutathione binding Binding to S-nitrosoglutathione, a nitrosothiol considered to be a natural nitric oxide (NO) donor involved in S-nitrosylation, and in the storage and transport of nitric oxide in biological systems. tmpzr1t_l9r_go_relaxed.owl GSNO binding bf 2011-03-11T09:57:19Z molecular_function owl:Class GO:1901594 biolink:NamedThing response to capsazepine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a capsazepine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T17:16:53Z biological_process owl:Class GO:0051037 biolink:NamedThing regulation of transcription involved in meiotic cell cycle Any process that modulates the frequency, rate or extent of transcription as part of a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic regulation of transcription|regulation of transcription, meiotic biological_process owl:Class GO:0002576 biolink:NamedThing platelet degranulation The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet. tmpzr1t_l9r_go_relaxed.owl platelet exocytosis biological_process owl:Class GO:1901775 biolink:NamedThing mitomycin C metabolic process The chemical reactions and pathways involving mitomycin C. tmpzr1t_l9r_go_relaxed.owl mitomycin C metabolism yaf 2013-01-15T12:11:48Z biological_process owl:Class GO:1903932 biolink:NamedThing regulation of DNA primase activity Any process that modulates the frequency, rate or extent of DNA primase activity. tmpzr1t_l9r_go_relaxed.owl mah 2015-02-12T14:28:26Z biological_process owl:Class GO:0036501 biolink:NamedThing UFD1-NPL4 complex A dimeric protein complex that contains the co-factors for the ATPase VCP/p97 (Cdc48p in budding yeast). In mammals, this complex consists of UFD1L (UFD1) and NPLOC4 (NPL4). In budding yeast, the complex is a dimer of Ufd1p and Npl4p. tmpzr1t_l9r_go_relaxed.owl Ufd1-Npl4 binary complex|Ufd1/Npl4 complex|Ufd1-Npl4 cofactor complex|Npl4p-Ufd1p complex|UFD1L-NPLOC4 complex bf 2015-05-14T10:59:43Z cellular_component owl:Class GO:0045702 biolink:NamedThing positive regulation of spermatid nuclear differentiation Any process that activates or increases the frequency, rate or extent of spermatid nuclear differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of spermatid nuclear differentiation|up-regulation of spermatid nuclear differentiation|activation of spermatid nuclear differentiation|upregulation of spermatid nuclear differentiation|up regulation of spermatid nuclear differentiation biological_process owl:Class GO:0071642 biolink:NamedThing positive regulation of macrophage inflammatory protein 1 alpha production Any process that activates or increases the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha. tmpzr1t_l9r_go_relaxed.owl positive regulation of macrophage inflammatory protein production|positive regulation of CCL3 production|positive regulation of chemokine (C-C motif) ligand 3 production|positive regulation of MIP-1a production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0071640 biolink:NamedThing regulation of macrophage inflammatory protein 1 alpha production Any process that modulates the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha. tmpzr1t_l9r_go_relaxed.owl regulation of CCL3 production|regulation of chemokine (C-C motif) ligand 3 production|regulation of MIP-1a production|regulation of macrophage inflammatory protein production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0086086 biolink:NamedThing voltage-gated potassium channel activity involved in AV node cell action potential repolarization Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an AV node cardiac muscle cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated potassium channel activity involved in atrioventricular node cardiac muscle cell action potential|voltage-gated potassium channel activity involved in AV node cardiac muscle cell action potential repolarization dph 2011-11-22T01:26:32Z molecular_function owl:Class GO:0070062 biolink:NamedThing extracellular exosome A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. tmpzr1t_l9r_go_relaxed.owl exosome|extracellular vesicular exosome cellular_component owl:Class GO:1901762 biolink:NamedThing oxytetracycline catabolic process The chemical reactions and pathways resulting in the breakdown of oxytetracycline. tmpzr1t_l9r_go_relaxed.owl oxytetracycline breakdown|oxytetracycline degradation|oxytetracycline catabolism yaf 2013-01-15T09:52:55Z biological_process owl:Class GO:0006597 biolink:NamedThing spermine biosynthetic process The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. tmpzr1t_l9r_go_relaxed.owl spermine biosynthesis|spermine synthesis|spermine formation|spermine anabolism biological_process owl:Class GO:0047273 biolink:NamedThing galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide = UDP + beta-N-acetyl-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide. tmpzr1t_l9r_go_relaxed.owl globoside synthetase activity|UDP-N-acetyl-D-galactosamine:D-galactosyl-1,4-D-galactosyl-1,4-D-glucosylceramide beta-N-acetyl-D-galactosaminyltransferase activity|UDP-N-acetylgalactosamine:globotriaosylceramide beta1,3-N-acetylgalactosaminyltransferase activity|uridine diphosphoacetylgalactosamine-galactosylgalactosylglucosylceramide acetylgalactosaminyltransferase activity|globotriosylceramide beta-1,6-N-acetylgalactosaminyltransferase activity|beta-3GalNAc-T1 activity|beta3GalNAc-T1|galactosylgalactosylglucosylceramide beta-D- activity|globoside synthase activity|UDP-N-acetylgalactosamine:globotriaosylceramide beta-3-N-acetylgalactosaminyltransferase activity|globotriaosylceramide 3-beta-N-acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide 3III-beta-N-acetyl-D-galactosaminyltransferase activity Reactome:R-HSA-8878914|RHEA:22252|MetaCyc:2.4.1.79-RXN|EC:2.4.1.79 GO:0047226 molecular_function owl:Class GO:0061184 biolink:NamedThing positive regulation of dermatome development Any process that increases the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T08:42:03Z biological_process owl:Class GO:0061183 biolink:NamedThing regulation of dermatome development Any process that modulates the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T08:40:26Z biological_process owl:Class GO:0032456 biolink:NamedThing endocytic recycling The directed movement of membrane-bounded vesicles from endosomes back to the plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins. tmpzr1t_l9r_go_relaxed.owl retrograde transport of endocytic vesicles|retrograde transport, endosome to plasma membrane https://github.com/geneontology/go-ontology/issues/20747 sp 2013-06-18T10:52:50Z GO:1990126 biological_process owl:Class GO:0016197 biolink:NamedThing endosomal transport The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane. tmpzr1t_l9r_go_relaxed.owl endosome localisation|endosome localization|endosome transport GO:0032439 biological_process owl:Class GO:0006559 biolink:NamedThing L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl phenylalanine catabolic process|L-phenylalanine catabolism|L-phenylalanine degradation|phenylalanine catabolism|L-phenylalanine breakdown biological_process owl:Class GO:0033044 biolink:NamedThing regulation of chromosome organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of chromosome organization and biogenesis|regulation of chromosome organisation biological_process owl:Class GO:0060266 biolink:NamedThing negative regulation of respiratory burst involved in inflammatory response Any process that decreases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl negative regulation of respiratory burst involved in acute inflammatory response biological_process owl:Class GO:0007636 biolink:NamedThing chemosensory jump behavior The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to a chemical substance. tmpzr1t_l9r_go_relaxed.owl jump response to chemical stimulus|chemosensory jump behaviour biological_process owl:Class GO:0007630 biolink:NamedThing jump response The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900224 biolink:NamedThing positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that activates or increases the frequency, rate or extent of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl upregulation of nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|positive regulation of nodal signaling of determination of left/right asymmetry in lateral mesoderm|upregulation of nodal signaling of determination of left/right asymmetry in lateral mesoderm|up regulation of nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|up-regulation of nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|activation of nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|up-regulation of nodal signaling of determination of left/right asymmetry in lateral mesoderm|positive regulation of nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|up regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|activation of nodal signaling of determination of left/right asymmetry in lateral mesoderm|positive regulation of nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry|up regulation of nodal signaling of determination of left/right asymmetry in lateral mesoderm|up-regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|activation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|upregulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry vk 2012-03-22T02:30:13Z biological_process owl:Class GO:0032757 biolink:NamedThing positive regulation of interleukin-8 production Any process that activates or increases the frequency, rate, or extent of interleukin-8 production. tmpzr1t_l9r_go_relaxed.owl activation of interleukin-8 production|stimulation of interleukin-8 production|up-regulation of interleukin-8 production|positive regulation of interleukin-8 biosynthetic process|up regulation of interleukin-8 production|positive regulation of interleukin-8 secretion|upregulation of interleukin-8 production|positive regulation of IL-8 production GO:0045416|GO:2000484 biological_process owl:Class GO:0034842 biolink:NamedThing thiophene-2-carboxylate-CoA ligase activity Catalysis of the reaction: thiophene-2-carboxylate + ATP + CoASH = thiophene-2-carboxyl-CoA + AMP + PPi. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1234 molecular_function owl:Class GO:0103058 biolink:NamedThing kaempferol 3-glucoside 7-O-rhamnosyltransferase activity Catalysis of the reaction: kaempferol 3-O-glucoside + UDP-L-rhamnose <=> kaempferol-3-glucoside-7-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-443 molecular_function owl:Class GO:0032334 biolink:NamedThing inhibin secretion The regulated release of an inhibin, either of two glycoproteins (designated A and B), secreted by the gonads and present in seminal plasma and follicular fluid, that inhibit pituitary production of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060986 biolink:NamedThing endocrine hormone secretion The regulated release of a hormone into the circulatory system. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-11T09:03:48Z biological_process owl:Class GO:0018261 biolink:NamedThing peptidyl-lysine guanylylation The guanylylation of peptidyl-lysine to form peptidyl-N6-(phospho-5'-guanosine)-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0228 biological_process owl:Class GO:0038166 biolink:NamedThing angiotensin-activated signaling pathway The series of molecular signals generated as a consequence of angiotensin II binding to an angiotensin receptor on the surface of the cell, and proceeding with the activated receptor transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl angiotensin-mediated signaling pathway|angiotensin receptor signaling pathway|angiotensin II-mediated signaling pathway bf 2012-05-14T03:09:03Z biological_process owl:Class GO:0070446 biolink:NamedThing negative regulation of oligodendrocyte progenitor proliferation Any process that stops or decreases the rate or extent of oligodendrocyte progenitor proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of oligodendrocyte precursor proliferation biological_process owl:Class GO:0110021 biolink:NamedThing cardiac muscle myoblast proliferation The multiplication or reproduction of cardiac muscle myoblasts, resulting in the expansion of a cardiac muscle myoblast cell population. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-29T14:35:24Z biological_process owl:Class GO:0051450 biolink:NamedThing myoblast proliferation The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035204 biolink:NamedThing negative regulation of lamellocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of lamellocyte differentiation. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes. tmpzr1t_l9r_go_relaxed.owl inhibition of lamellocyte differentiation|down-regulation of lamellocyte differentiation|down regulation of lamellocyte differentiation|downregulation of lamellocyte differentiation biological_process owl:Class GO:0045614 biolink:NamedThing negative regulation of plasmatocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of plasmatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of plasmatocyte differentiation|down-regulation of plasmatocyte differentiation|down regulation of plasmatocyte differentiation|downregulation of plasmatocyte differentiation biological_process owl:Class GO:0071487 biolink:NamedThing cellular response to low light intensity stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low light intensity stimulus. Low light intensity is defined as a level of electromagnetic radiation at or below 0.1 micromols/m2. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:13:29Z biological_process owl:Class GO:0009645 biolink:NamedThing response to low light intensity stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low light intensity stimulus. Low light intensity is defined as a level of electromagnetic radiation at or below 0.1 micromols/m2. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903886 biolink:NamedThing positive regulation of chemokine (C-C motif) ligand 20 production Any process that activates or increases the frequency, rate or extent of chemokine (C-C motif) ligand 20 production. tmpzr1t_l9r_go_relaxed.owl activation of CCL20 production|upregulation of chemokine (C-C motif) ligand 20 production|positive regulation of C-C motif chemokine 20 production|up regulation of CCL20 production|upregulation of CCL20 production|up regulation of CCL-20 production|upregulation of CCL-20 production|up-regulation of CCL-20 production|upregulation of C-C motif chemokine 20 production|activation of CCL-20 production|up-regulation of chemokine (C-C motif) ligand 20 production|up-regulation of CCL20 production|activation of chemokine (C-C motif) ligand 20 production|up regulation of C-C motif chemokine 20 production|up-regulation of C-C motif chemokine 20 production|activation of C-C motif chemokine 20 production|positive regulation of CCL20 production|positive regulation of CCL-20 production|up regulation of chemokine (C-C motif) ligand 20 production krc 2015-02-06T16:31:20Z biological_process owl:Class GO:1902060 biolink:NamedThing positive regulation of sporocarp development involved in sexual reproduction Any process that activates or increases the frequency, rate or extent of sporocarp development involved in sexual reproduction. tmpzr1t_l9r_go_relaxed.owl up regulation of perfect stage fruiting body development|up regulation of sporocarp development involved in sexual reproduction|upregulation of fruiting body development involved in sexual reproduction|up-regulation of perfect stage fruiting body development|positive regulation of fruiting body formation involved in sexual reproduction|activation of sporocarp development involved in sexual reproduction|up-regulation of ascus development|activation of fruiting body development involved in sexual reproduction|positive regulation of perfect stage fruiting body development|up-regulation of fruiting body formation involved in sexual reproduction|upregulation of ascus development|activation of ascus development|activation of perfect stage fruiting body development|up-regulation of fruiting body development involved in sexual reproduction|positive regulation of fruiting body development involved in sexual reproduction|activation of fruiting body formation involved in sexual reproduction|up-regulation of sporocarp development involved in sexual reproduction|up regulation of ascus development|upregulation of perfect stage fruiting body development|upregulation of sporocarp development involved in sexual reproduction|up regulation of fruiting body development involved in sexual reproduction|up regulation of fruiting body formation involved in sexual reproduction|positive regulation of ascus development|upregulation of fruiting body formation involved in sexual reproduction di 2013-04-16T04:08:47Z biological_process owl:Class GO:0080094 biolink:NamedThing response to trehalose-6-phosphate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl response to trehalose-6-phosphate stimulus dhl 2009-04-22T04:49:13Z biological_process owl:Class GO:1901711 biolink:NamedThing negative regulation of homoserine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of homoserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of homoserine formation|negative regulation of homoserine formation|downregulation of homoserine biosynthesis|negative regulation of homoserine synthesis|inhibition of homoserine anabolism|down regulation of homoserine formation|down-regulation of homoserine biosynthesis|down regulation of homoserine biosynthesis|down-regulation of homoserine formation|down-regulation of homoserine anabolism|inhibition of homoserine biosynthetic process|down-regulation of homoserine biosynthetic process|down-regulation of homoserine synthesis|inhibition of homoserine biosynthesis|down regulation of homoserine synthesis|negative regulation of homoserine anabolism|negative regulation of homoserine biosynthesis|inhibition of homoserine synthesis|down regulation of homoserine anabolism|downregulation of homoserine formation|downregulation of homoserine synthesis|down regulation of homoserine biosynthetic process|downregulation of homoserine biosynthetic process|downregulation of homoserine anabolism mcc 2012-12-19T16:02:00Z biological_process owl:Class GO:0022010 biolink:NamedThing central nervous system myelination The process in which neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of oligodendrocytes in the central nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier. tmpzr1t_l9r_go_relaxed.owl myelination in central nervous system biological_process owl:Class GO:0042552 biolink:NamedThing myelination The process in which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier. tmpzr1t_l9r_go_relaxed.owl myelinogenesis Wikipedia:Myelin biological_process owl:Class GO:0052857 biolink:NamedThing NADPHX epimerase activity Catalysis of the reaction: (R)-NADPHX = (S)-NADPHX. tmpzr1t_l9r_go_relaxed.owl EC:5.1.99.6|Reactome:R-HSA-6806966|RHEA:32227 molecular_function owl:Class GO:0016854 biolink:NamedThing racemase and epimerase activity Catalysis of a reaction that alters the configuration of one or more chiral centers in a molecule. tmpzr1t_l9r_go_relaxed.owl racemase and epimerase activity, acting on other compounds EC:5.1.-.- Note that 'epimerase' refers to the conversion of an epimer into its diastereoisomer, and 'racemase' refers to the interconversion of the two enantiomers of a chiral compound. molecular_function owl:Class GO:0010692 biolink:NamedThing regulation of alkaline phosphatase activity Any process that modulates the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071411 biolink:NamedThing cellular response to fluoxetine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoxetine stimulus. Fluoxetine increases the extracellular level of the neurotransmitter serotonin by inhibiting its reuptake into the presynaptic cell, increasing the level of serotonin available to bind to the postsynaptic receptor. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. Direct annotations to this term may be amended during annotation QC. mah 2009-12-14T03:09:58Z biological_process owl:Class GO:0014076 biolink:NamedThing response to fluoxetine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoxetine stimulus. Fluoxetine increases the extracellular level of the neurotransmitter serotonin by inhibiting its reuptake into the presynaptic cell, increasing the level of serotonin available to bind to the postsynaptic receptor. tmpzr1t_l9r_go_relaxed.owl response to SSRI|response to selective serotonin reuptake inhibitor Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0017159 biolink:NamedThing pantetheine hydrolase activity Catalysis of the reaction: (R)-pantetheine + H(2)O = (R)-pantothenate + cysteamine. tmpzr1t_l9r_go_relaxed.owl vanin-1|vanin|pantetheinase activity|(R)-pantetheine amidohydrolase activity KEGG_REACTION:R02973|Reactome:R-HSA-8938300|RHEA:13445|EC:3.5.1.92|MetaCyc:3.5.1.92-RXN molecular_function owl:Class GO:0001849 biolink:NamedThing complement component C1q complex binding Binding to a C1q complex, a component of the classical complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902492 biolink:NamedThing positive regulation of sperm capacitation Any process that activates or increases the frequency, rate or extent of sperm capacitation. tmpzr1t_l9r_go_relaxed.owl activation of sperm capacitation|up-regulation of sperm activation|up regulation of sperm activation|upregulation of sperm activation|up regulation of sperm capacitation|activation of sperm activation|positive regulation of sperm activation|upregulation of sperm capacitation|up-regulation of sperm capacitation hjd 2013-11-12T21:17:21Z biological_process owl:Class GO:1902490 biolink:NamedThing regulation of sperm capacitation Any process that modulates the frequency, rate or extent of sperm capacitation. tmpzr1t_l9r_go_relaxed.owl regulation of sperm activation hjd 2013-11-12T21:17:03Z biological_process owl:Class GO:0046622 biolink:NamedThing positive regulation of organ growth Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046620 biolink:NamedThing regulation of organ growth Any process that modulates the frequency, rate or extent of growth of an organ of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010229 biolink:NamedThing inflorescence development The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051348 biolink:NamedThing negative regulation of transferase activity Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. tmpzr1t_l9r_go_relaxed.owl inhibition of transferase activity|transferase inhibitor|downregulation of transferase activity|down-regulation of transferase activity|down regulation of transferase activity This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. biological_process owl:Class GO:0070419 biolink:NamedThing nonhomologous end joining complex A protein complex that plays a role in DNA double-strand break repair via nonhomologous end joining. Such complexes typically contain a specialized DNA ligase (e.g. Lig4 in eukaryotes) and one or more proteins that bind to DNA ends. tmpzr1t_l9r_go_relaxed.owl NHEJ complex|non-homologous end joining complex cellular_component owl:Class GO:0030547 biolink:NamedThing signaling receptor inhibitor activity Binds to and modulates the activity of a signaling receptor. tmpzr1t_l9r_go_relaxed.owl receptor inhibitor activity molecular_function owl:Class GO:1900595 biolink:NamedThing (+)-kotanin catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-kotanin. tmpzr1t_l9r_go_relaxed.owl (+)-kotanin breakdown|(+)-kotanin catabolism|(+)-kotanin degradation di 2012-05-15T06:54:40Z biological_process owl:Class GO:0008381 biolink:NamedThing mechanosensitive ion channel activity Enables the transmembrane transfer of an ion by a channel that opens in response to a mechanical stress. tmpzr1t_l9r_go_relaxed.owl mechanically gated channel activity|mechanically-gated channel activity|mechanically-gated ion channel activity TC:1.A.23.2.1 GO:0022833 molecular_function owl:Class GO:0099147 biolink:NamedThing extrinsic component of postsynaptic density membrane The component of the postsynaptic density membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl dos 2017-07-05T10:44:43Z cellular_component owl:Class GO:0005507 biolink:NamedThing copper ion binding Binding to a copper (Cu) ion. tmpzr1t_l9r_go_relaxed.owl copper/cadmium binding|copper binding molecular_function owl:Class GO:0046992 biolink:NamedThing oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors EC:1.21.-.- molecular_function owl:Class GO:1904750 biolink:NamedThing negative regulation of protein localization to nucleolus Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to nucleolus. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein localization to nucleolus|inhibition of protein localisation to nucleolus|inhibition of protein localization in nucleolus|down-regulation of protein localization in nucleolus|negative regulation of protein localisation to nucleolus|down regulation of protein localisation in nucleolus|downregulation of protein localisation in nucleolus|negative regulation of protein localisation in nucleolus|inhibition of protein localisation in nucleolus|down-regulation of protein localisation to nucleolus|downregulation of protein localisation to nucleolus|inhibition of protein localization to nucleolus|downregulation of protein localization in nucleolus|down regulation of protein localization in nucleolus|negative regulation of protein localization in nucleolus|down-regulation of protein localisation in nucleolus|downregulation of protein localization to nucleolus|down regulation of protein localisation to nucleolus|down regulation of protein localization to nucleolus nc 2015-10-19T15:16:24Z biological_process owl:Class GO:1904749 biolink:NamedThing regulation of protein localization to nucleolus Any process that modulates the frequency, rate or extent of protein localization to nucleolus. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in nucleolus|regulation of protein localisation in nucleolus|regulation of protein localisation to nucleolus nc 2015-10-19T15:16:17Z biological_process owl:Class GO:0001858 biolink:NamedThing complement component iC3b receptor activity Combining with the iC3b product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004875 biolink:NamedThing complement receptor activity Combining with any component or product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl anaphylatoxin receptor activity Note that the complement cascade includes all of the components involved in the classical complement pathway, the alternative complement pathway, and the lectin complement pathway, as well as the common components of all three pathways. GO:0004942 molecular_function owl:Class GO:0085015 biolink:NamedThing dormancy maintenance of symbiont in host Any process in which a dormant state is maintained by the symbiont within the host organism. tmpzr1t_l9r_go_relaxed.owl NRP|non-replicating persistence jl 2010-05-19T03:17:32Z biological_process owl:Class GO:0044573 biolink:NamedThing nitrogenase P cluster assembly The biochemical reactions and pathways resulting in the formation of a P-cluster of a nitrogenase, a high-nuclearity, Fe/S-only cluster that can be viewed as two [4Fe-4S] sub-clusters sharing a gamma-6-sulfide. tmpzr1t_l9r_go_relaxed.owl nitrogenase P cluster maturation|nitrogenase P cluster biosynthesis jl 2012-04-18T03:29:04Z biological_process owl:Class GO:0098854 biolink:NamedThing podocyte primary projection A cell projection originating from a renal glomerular podocyte and extending to the renal glomerular podocyte foot. tmpzr1t_l9r_go_relaxed.owl podocyte major process|glomerular visceral epithelial cell primary projection|primary podocyte process cellular_component owl:Class GO:0004336 biolink:NamedThing galactosylceramidase activity Catalysis of the reaction: D-galactosyl-N-acylsphingosine + H2O = D-galactose + N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl galcerase activity|galactosylceramide beta-galactosidase activity|galactocerebrosidase activity|lactosylceramidase I|galactosylceramidase I|galactosylcerebrosidase activity|D-galactosyl-N-acylsphingosine galactohydrolase activity|beta-galactocerebrosidase activity|galactocerebroside beta-galactosidase activity|galactocerebroside-beta-D-galactosidase activity|lactosylceramidase activity|galactocerebroside galactosidase activity|ceramide galactosidase activity|beta-galactosylceramidase activity|cerebroside galactosidase activity|cerebroside beta-galactosidase activity MetaCyc:GALACTOSYLCERAMIDASE-RXN|EC:3.2.1.46|Reactome:R-HSA-1606564|RHEA:14297 molecular_function owl:Class GO:0034701 biolink:NamedThing tripeptidase activity Catalysis of the hydrolysis of a tripeptide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.4.11.4-RXN|EC:3.4.13.- molecular_function owl:Class GO:0097421 biolink:NamedThing liver regeneration The regrowth of lost or destroyed liver. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-07T10:22:43Z biological_process owl:Class GO:0001889 biolink:NamedThing liver development The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902894 biolink:NamedThing negative regulation of pri-miRNA transcription by RNA polymerase II Any process that stops, prevents or reduces the frequency, rate or extent of pri-miRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl negative regulation of pri-miRNA transcription from RNA polymerase II promoter|inhibition of pri-miRNA transcription from RNA polymerase II promoter|downregulation of pri-miRNA transcription from RNA polymerase II promoter|down-regulation of pri-miRNA transcription from RNA polymerase II promoter|down regulation of pri-miRNA transcription from RNA polymerase II promoter dph 2014-04-08T13:22:14Z biological_process owl:Class GO:0033111 biolink:NamedThing attachment organelle membrane The lipid bilayer surrounding an attachment organelle. This is a region of the cell membrane facing the environment - in mycoplasma, part of the mycolate outer membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140415 biolink:NamedThing effector-mediated modulation of host defenses by symbiont A process mediated by a molecule secreted by a symbiont that results in the modulation (either activation or suppresion) of a defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pg 2020-01-20T16:46:41Z biological_process owl:Class GO:0033100 biolink:NamedThing NuA3 histone acetyltransferase complex A Gcn5-independent multisubunit complex that catalyzes the acetylation of histone H3. The budding yeast complex includes Sas3p, Taf30p, and Yng1p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070775 biolink:NamedThing H3 histone acetyltransferase complex A multisubunit complex that catalyzes the acetylation of histone H3. tmpzr1t_l9r_go_relaxed.owl H3 HAT complex mah 2009-07-02T11:56:48Z cellular_component owl:Class GO:0090089 biolink:NamedThing regulation of dipeptide transport Any process that modulates the rate, frequency or extent of dipeptide transport. Dipeptide transport is the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:24:36Z biological_process owl:Class GO:0090088 biolink:NamedThing regulation of oligopeptide transport Any process that modulates the frequency, rate or extent of the directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:23:18Z biological_process owl:Class GO:0031867 biolink:NamedThing EP4 subtype prostaglandin E2 receptor binding Binding to an EP4 subtype prostaglandin E2 receptor. tmpzr1t_l9r_go_relaxed.owl EP4 subtype prostaglandin E2 receptor ligand|prostanoid EP4 receptor binding molecular_function owl:Class GO:0031862 biolink:NamedThing prostanoid receptor binding Binding to a prostanoid receptor. tmpzr1t_l9r_go_relaxed.owl prostanoid receptor ligand molecular_function owl:Class GO:1990228 biolink:NamedThing sulfurtransferase complex A protein complex capable of catalyzing the transfer of sulfur atoms from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl sulfur transfer complex|SufE complex|ThiF-ThiS complex|SufE dimer bhm 2013-11-12T09:08:23Z cellular_component owl:Class GO:0002621 biolink:NamedThing positive regulation of non-professional antigen presenting cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of non-professional antigen presenting cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl up regulation of non-professional antigen presenting cell antigen processing and presentation|up-regulation of non-professional antigen presenting cell antigen processing and presentation|stimulation of non-professional antigen presenting cell antigen processing and presentation|upregulation of non-professional antigen presenting cell antigen processing and presentation|activation of non-professional antigen presenting cell antigen processing and presentation biological_process owl:Class GO:1903368 biolink:NamedThing regulation of foraging behavior Any process that modulates the frequency, rate or extent of foraging behavior. tmpzr1t_l9r_go_relaxed.owl mr 2014-08-22T03:03:04Z biological_process owl:Class GO:1900181 biolink:NamedThing negative regulation of protein localization to nucleus Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to nucleus. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localization to nucleus|inhibition of protein localization in nucleus|down regulation of protein localization in cell nucleus|down-regulation of protein localisation to nucleus|downregulation of protein localization in nucleus|negative regulation of protein localization in nucleus|negative regulation of protein localisation to nucleus|down regulation of protein localization in nucleus|down-regulation of protein localization in cell nucleus|inhibition of protein localisation to nucleus|down-regulation of protein localization in nucleus|inhibition of protein localization to nucleus|negative regulation of protein localization in cell nucleus|inhibition of protein localization in cell nucleus|down-regulation of protein localization to nucleus|downregulation of protein localization in cell nucleus|downregulation of protein localisation to nucleus|down regulation of protein localisation to nucleus|downregulation of protein localization to nucleus bf 2012-03-12T01:23:48Z biological_process owl:Class GO:2000631 biolink:NamedThing regulation of pre-miRNA processing Any process that modulates the frequency, rate or extent of pre-microRNA processing. tmpzr1t_l9r_go_relaxed.owl regulation of pre-microRNA processing dph 2011-04-18T03:50:16Z biological_process owl:Class GO:0004950 biolink:NamedThing chemokine receptor activity Combining with a chemokine, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Chemokines are a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046009 biolink:NamedThing positive regulation of female receptivity, post-mating Any process that increases the receptiveness of a female to male advances subsequent to mating. tmpzr1t_l9r_go_relaxed.owl upregulation of female receptivity, post-mating|activation of female receptivity, post-mating|up-regulation of female receptivity, post-mating|up regulation of female receptivity, post-mating|stimulation of female receptivity, post-mating biological_process owl:Class GO:0046008 biolink:NamedThing regulation of female receptivity, post-mating Any process that modulates the receptiveness of a female to male advances subsequent to mating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047089 biolink:NamedThing dihydrochelirubine 12-monooxygenase activity Catalysis of the reaction: dihydrochelirubine + H(+) + NADPH + O(2) = 12-hydroxydihydrochelirubine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl dihydrochelirubine 12-hydroxylase activity|dihydrochelirubine,NADPH:oxygen oxidoreductase (12-hydroxylating) KEGG_REACTION:R04708|RHEA:10156|MetaCyc:1.14.13.57-RXN|EC:1.14.14.101 molecular_function owl:Class GO:0060240 biolink:NamedThing negative regulation of signal transduction involved in conjugation with cellular fusion Any process that decreases the rate, frequency or extent of the series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016261 biolink:NamedThing selenocysteine catabolic process The chemical reactions and pathways resulting in the breakdown of selenocysteine, an essential component of glutathione peroxidase and some other proteins. tmpzr1t_l9r_go_relaxed.owl selenocysteine degradation|selenocysteine breakdown|selenocysteine catabolism biological_process owl:Class GO:0044262 biolink:NamedThing cellular carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl main pathways of carbohydrate metabolic process|cellular carbohydrate metabolism|main pathways of carbohydrate metabolism GO:0006092 biological_process owl:Class GO:0070480 biolink:NamedThing exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-independent decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs independent of deadenylation, but requires decapping followed by transcript decay. tmpzr1t_l9r_go_relaxed.owl exonucleolytic nuclear-transcribed mRNA catabolism involved in deadenylation-independent decay|exonucleolytic nuclear-transcribed mRNA breakdown involved in deadenylation-independent decay|exonucleolytic nuclear-transcribed mRNA degradation involved in deadenylation-independent decay biological_process owl:Class GO:0006622 biolink:NamedThing protein targeting to lysosome The process of directing proteins towards the lysosome using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl protein-lysosome targeting biological_process owl:Class GO:0046484 biolink:NamedThing oxazole or thiazole metabolic process The chemical reactions and pathways involving oxazole or thiazole, five-membered heterocyclic ring structures containing an oxygen and a sulfur, respectively, in the 1-position and a nitrogen in the 3-position. tmpzr1t_l9r_go_relaxed.owl oxazole or thiazole metabolism biological_process owl:Class GO:0046488 biolink:NamedThing phosphatidylinositol metabolic process The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. tmpzr1t_l9r_go_relaxed.owl PtdIns metabolic process|phosphoinositide metabolism|phosphoinositide metabolic process|PtdIns metabolism|phosphatidylinositol metabolism GO:0030384 biological_process owl:Class GO:0008787 biolink:NamedThing allose kinase activity Catalysis of the reaction: ATP + D-allose = ADP + D-allose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl allokinase (phosphorylating)|D-allose-6-kinase activity|D-allokinase activity|allokinase activity|ATP:D-allose 6-phosphotransferase activity RHEA:14805|EC:2.7.1.55|MetaCyc:ALLOSE-KINASE-RXN molecular_function owl:Class GO:0038135 biolink:NamedThing ERBB2-ERBB4 signaling pathway A series of molecular signals initiated by binding of a ligand to a ERBB4 receptor on the surface of a cell, followed by transmission of the signal by a heterodimeric complex of ERBB2 and ERBB4. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB4. tmpzr1t_l9r_go_relaxed.owl ERBB2-ERBB4 signalling pathway|HER2-HER4 signaling pathway bf 2012-03-30T11:19:52Z biological_process owl:Class GO:0038128 biolink:NamedThing ERBB2 signaling pathway A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair. tmpzr1t_l9r_go_relaxed.owl ERBB2 signalling pathway|receptor tyrosine-protein kinase erbB-2 signaling pathway|NEU signaling|HER2 signaling pathway bf 2012-03-30T10:05:12Z biological_process owl:Class GO:1902480 biolink:NamedThing protein localization to mitotic spindle A process in which a protein is transported to, or maintained in, a location within a mitotic spindle. tmpzr1t_l9r_go_relaxed.owl protein localization in mitotic spindle|protein localisation in mitotic spindle|protein localisation to mitotic spindle mah 2013-11-04T13:16:47Z biological_process owl:Class GO:0072698 biolink:NamedThing protein localization to microtubule cytoskeleton A cellular protein localization process in which a protein is transported to, or maintained at, a location within the microtubule cytoskeleton. tmpzr1t_l9r_go_relaxed.owl protein localisation to microtubule cytoskeleton mah 2012-04-11T01:19:35Z biological_process owl:Class GO:0090433 biolink:NamedThing palmitoyl-CoA ligase activity Catalysis of the reaction: ATP + palmitic acid + CoA = AMP + diphosphate + palmitoyl-CoA. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA synthetase activity Reactome:R-HSA-434382 tb 2012-07-25T03:31:31Z molecular_function owl:Class GO:0004467 biolink:NamedThing long-chain fatty acid-CoA ligase activity Catalysis of the reaction: ATP + a long-chain fatty acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl acyl-CoA synthetase activity|pristanoyl-CoA synthetase|LCFA synthetase activity|long-chain fatty acyl coenzyme A synthetase activity|acyl-CoA ligase activity|thiokinase|long-chain-fatty-acyl-CoA synthetase activity|fatty acid thiokinase (long-chain) activity|long chain fatty acyl-CoA synthetase activity|long-chain fatty acid activation|stearoyl-CoA synthetase|long-chain acyl CoA synthetase activity|long-chain acyl-CoA synthetase activity|acyl-activating enzyme activity|long-chain-fatty-acid-CoA ligase activity|lignoceroyl-CoA synthase activity|long-chain acyl-coenzyme A synthetase activity https://github.com/geneontology/go-ontology/issues/20462|https://github.com/geneontology/go-ontology/issues/18967 Reactome:R-HSA-193407|Reactome:R-HSA-193711|EC:6.2.1.3|Reactome:R-HSA-193766|Reactome:R-HSA-548843|Reactome:R-HSA-193424|Reactome:R-HSA-192137|RHEA:15421|Reactome:R-HSA-2046098|Reactome:R-HSA-201035|Reactome:R-HSA-193743|Reactome:R-HSA-159425|MetaCyc:ACYLCOASYN-RXN|Reactome:R-HSA-2046085|MetaCyc:PWY-5143|UM-BBD_enzymeID:e0025|Reactome:R-HSA-5696004|Reactome:R-HSA-193727|Reactome:R-HSA-193401 GO:0003996 molecular_function owl:Class GO:0016690 biolink:NamedThing diarylpropane peroxidase activity Catalysis of the reaction: (3,4-dimethoxyphenyl)methanol + H2O2 = 3,4-dimethoxybenzaldehyde + 2 H2O. tmpzr1t_l9r_go_relaxed.owl diarylpropane:oxygen,hydrogen-peroxide oxidoreductase (C-C-bond-cleaving)|ligninase I activity|LiP activity|ligninase activity|lignin peroxidase activity|diarylpropane oxygenase activity|1,2-bis(3,4-dimethoxyphenyl)propane-1,3-diol:hydrogen-peroxide oxidoreductase activity RHEA:30271|MetaCyc:DIARYLPROPANE-PEROXIDASE-RXN|EC:1.11.1.14 molecular_function owl:Class GO:0036172 biolink:NamedThing thiamine salvage A process that generates thiamine (vitamin B1) from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-6897|MetaCyc:PWY-6896|MetaCyc:PWY-6898 bf 2012-03-29T10:31:05Z biological_process owl:Class GO:0009228 biolink:NamedThing thiamine biosynthetic process The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl thiamine formation|thiamine synthesis|thiamine biosynthesis|vitamin B1 biosynthesis|vitamin B1 biosynthetic process|thiamin biosynthetic process|thiamin anabolism MetaCyc:THISYN-PWY biological_process owl:Class GO:0001217 biolink:NamedThing DNA-binding transcription repressor activity A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets. tmpzr1t_l9r_go_relaxed.owl transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding|bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding|sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription|metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription|transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding|bacterial-type DNA binding transcription repressor activity|cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription|copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription|bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding|bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding|bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding|bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription https://github.com/geneontology/go-ontology/issues/16736|https://github.com/geneontology/go-ontology/issues/20253 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. krc 2011-01-26T03:15:45Z GO:0001219|GO:0001141|GO:0001218|GO:0001220 molecular_function owl:Class GO:1903901 biolink:NamedThing negative regulation of viral life cycle Any process that stops, prevents or reduces the frequency, rate or extent of viral life cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of viral assembly, maturation, egress, and release|down regulation of viral replication|down-regulation of viral replication|negative regulation of lytic viral life cycle|down-regulation of viral infectious cycle|down regulation of viral assembly, maturation, egress, and release|downregulation of viral infectious cycle|inhibition of viral life cycle|down-regulation of lytic viral life cycle|inhibition of viral assembly, maturation, egress, and release|downregulation of lytic viral life cycle|down-regulation of viral life cycle|downregulation of viral replication|inhibition of viral infectious cycle|down regulation of viral life cycle|down-regulation of viral assembly, maturation, egress, and release|downregulation of viral life cycle|inhibition of lytic viral life cycle|negative regulation of viral replication|negative regulation of viral infectious cycle|downregulation of viral assembly, maturation, egress, and release|down regulation of lytic viral life cycle|inhibition of viral replication|down regulation of viral infectious cycle pga 2015-02-09T10:22:16Z biological_process owl:Class GO:0060407 biolink:NamedThing negative regulation of penile erection Any process that stops, prevents, or reduces the rate, frequency or extent of penile erection. Penile erection is the hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002720 biolink:NamedThing positive regulation of cytokine production involved in immune response Any process that activates or increases the frequency, rate, or extent of cytokine production that contributes to an immune response. tmpzr1t_l9r_go_relaxed.owl up-regulation of cytokine production during immune response|positive regulation of cytokine production during immune response|stimulation of cytokine production during immune response|upregulation of cytokine production during immune response|up regulation of cytokine production during immune response|positive regulation of cytokine biosynthetic process involved in immune response|positive regulation of cytokine secretion involved in immune response|activation of cytokine production during immune response GO:0002741|GO:0002744 biological_process owl:Class GO:0002718 biolink:NamedThing regulation of cytokine production involved in immune response Any process that modulates the frequency, rate, or extent of cytokine production that contributes to an immune response. tmpzr1t_l9r_go_relaxed.owl regulation of cytokine biosynthetic process involved in immune response|regulation of cytokine secretion involved in immune response|regulation of cytokine production during immune response GO:0002742|GO:0002739 biological_process owl:Class GO:0018079 biolink:NamedThing protein halogenation The addition of a halogen to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid halogenation biological_process owl:Class GO:0070276 biolink:NamedThing halogen metabolic process The chemical reactions and pathways involving any halogen, elements of Group VII; includes metabolism of halogen-containing compounds. tmpzr1t_l9r_go_relaxed.owl halogen metabolism biological_process owl:Class GO:0017058 biolink:NamedThing FH1 domain binding Binding to a FH1 domain of a protein, a proline-rich domain, usually located in front of a FH2 domain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000376 biolink:NamedThing positive regulation of oxygen metabolic process Any process that activates or increases the frequency, rate or extent of oxygen metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of oxygen metabolism|positive regulation of diatomic oxygen metabolic process mah 2011-02-11T02:03:52Z biological_process owl:Class GO:0033069 biolink:NamedThing ansamycin metabolic process The chemical reactions and pathways involving ansamycins, any of a group of complex macrolactam compounds characterized by a cyclic structure in which an aliphatic ansa chain forms a bridge between two non-adjacent positions of a cyclic p-system; many exhibit antibacterial, antifungal or antitumor activity. tmpzr1t_l9r_go_relaxed.owl ansamycin metabolism biological_process owl:Class GO:0006748 biolink:NamedThing lipoamide metabolic process The chemical reactions and pathways involving lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group. tmpzr1t_l9r_go_relaxed.owl lipoamide metabolism biological_process owl:Class GO:1905376 biolink:NamedThing negative regulation of cytochrome-c oxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of cytochrome-c oxidase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of NADH cytochrome c oxidase|downregulation of complex IV (mitochondrial electron transport) activity|down regulation of cytochrome-c oxidase activity|down-regulation of complex IV (mitochondrial electron transport) activity|down-regulation of indophenol oxidase|inhibition of aa3-type cytochrome c oxidase|inhibition of ferrocytochrome c oxidase|downregulation of cytochrome aa3 activity|inhibition of cytochrome-c oxidase activity|down regulation of aa3-type cytochrome c oxidase|inhibition of cytochrome aa3 activity|down regulation of complex IV (mitochondrial electron transport) activity|down regulation of warburg's respiratory enzyme activity|downregulation of cytochrome-c oxidase activity|down regulation of indophenol oxidase|down-regulation of ba3-type cytochrome c oxidase|down regulation of cbb3-type cytochrome c oxidase|inhibition of ferrocytochrome-c:oxygen oxidoreductase|down-regulation of cytochrome-c oxidase activity|negative regulation of indophenolase|down regulation of ba3-type cytochrome c oxidase|downregulation of indophenolase|negative regulation of cytochrome oxidase activity|down-regulation of cytochrome aa3 activity|inhibition of cytochrome oxidase activity|negative regulation of ferrocytochrome c oxidase|down regulation of cytochrome oxidase activity|down regulation of indophenolase|inhibition of cbb3-type cytochrome c oxidase|inhibition of cytochrome a3 activity|down-regulation of cbb3-type cytochrome c oxidase|downregulation of indophenol oxidase|down-regulation of aa3-type cytochrome c oxidase|inhibition of complex IV (mitochondrial electron transport) activity|inhibition of indophenolase|inhibition of ba3-type cytochrome c oxidase|down regulation of cytochrome c oxidase activity|downregulation of ferrocytochrome-c:oxygen oxidoreductase|inhibition of indophenol oxidase|downregulation of warburg's respiratory enzyme activity|down regulation of ferrocytochrome c oxidase|inhibition of cytochrome c oxidase activity|downregulation of aa3-type cytochrome c oxidase|down-regulation of cytochrome a3 activity|negative regulation of cytochrome c oxidase activity|negative regulation of complex IV (mitochondrial electron transport) activity|down-regulation of caa3-type cytochrome c oxidase|down regulation of caa3-type cytochrome c oxidase|down-regulation of cytochrome oxidase activity|negative regulation of cytochrome aa3 activity|negative regulation of warburg's respiratory enzyme activity|negative regulation of cytochrome a3 activity|downregulation of ferrocytochrome c oxidase|negative regulation of caa3-type cytochrome c oxidase|down-regulation of indophenolase|downregulation of cytochrome a3 activity|down regulation of ferrocytochrome-c:oxygen oxidoreductase|down regulation of cytochrome aa3 activity|negative regulation of ferrocytochrome-c:oxygen oxidoreductase|negative regulation of ba3-type cytochrome c oxidase|inhibition of caa3-type cytochrome c oxidase|down-regulation of NADH cytochrome c oxidase|negative regulation of NADH cytochrome c oxidase|downregulation of cytochrome c oxidase activity|down regulation of NADH cytochrome c oxidase|downregulation of caa3-type cytochrome c oxidase|down-regulation of warburg's respiratory enzyme activity|downregulation of cbb3-type cytochrome c oxidase|downregulation of NADH cytochrome c oxidase|downregulation of cytochrome oxidase activity|downregulation of ba3-type cytochrome c oxidase|negative regulation of indophenol oxidase|down regulation of cytochrome a3 activity|down-regulation of cytochrome c oxidase activity|negative regulation of cbb3-type cytochrome c oxidase|negative regulation of aa3-type cytochrome c oxidase|down-regulation of ferrocytochrome c oxidase|inhibition of warburg's respiratory enzyme activity|down-regulation of ferrocytochrome-c:oxygen oxidoreductase sl 2016-08-17T20:29:57Z biological_process owl:Class GO:1900068 biolink:NamedThing negative regulation of cellular response to alkaline pH Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to alkalinity. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular response to basic pH|negative regulation of cellular response to alkalinity|downregulation of cellular response to alkalinity|down-regulation of cellular response to basic pH|down regulation of cellular response to basic pH|inhibition of cellular response to basic pH|down-regulation of cellular response to alkaline pH|downregulation of cellular response to basic pH|downregulation of cellular response to alkaline pH|down regulation of cellular response to alkaline pH|down regulation of cellular response to alkalinity|inhibition of cellular response to alkalinity|down-regulation of cellular response to alkalinity|inhibition of cellular response to alkaline pH pr 2012-01-26T02:35:03Z biological_process owl:Class GO:0052591 biolink:NamedThing sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity Catalysis of the reaction: sn-glycerol 3-phosphate + ubiquinone-8 = glycerone phosphate + ubiquinol-8. tmpzr1t_l9r_go_relaxed.owl MetaCyc:GLYC3PDEHYDROG-RXN|RHEA:28751|EC:1.1.5.3 Note that enzymes classified as EC:1.1.5.3 have several activities. They should be annotated with the terms GO:0004368, GO:0052590 and GO:0052591. molecular_function owl:Class GO:0052590 biolink:NamedThing sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity Catalysis of the reaction: sn-glycerol 3-phosphate + a ubiquinone = glycerone phosphate + a ubiquinol. tmpzr1t_l9r_go_relaxed.owl EC:1.1.5.3|MetaCyc:RXN0-5258 Note that enzymes classified as EC:1.1.5.3 have several activities. They should be annotated with the terms GO:0004368, GO:0052590 and GO:0052591. molecular_function owl:Class GO:2000765 biolink:NamedThing regulation of cytoplasmic translation Any process that modulates the frequency, rate or extent of cytoplasmic translation. tmpzr1t_l9r_go_relaxed.owl vw 2011-06-20T10:39:19Z biological_process owl:Class GO:2000870 biolink:NamedThing regulation of progesterone secretion Any process that modulates the frequency, rate or extent of progesterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:51:14Z biological_process owl:Class GO:1900788 biolink:NamedThing pseurotin A metabolic process The chemical reactions and pathways involving pseurotin A. tmpzr1t_l9r_go_relaxed.owl Pseurotin metabolism|Pseurotin metabolic process|pseurotin A metabolism di 2012-06-04T09:37:18Z biological_process owl:Class GO:0042129 biolink:NamedThing regulation of T cell proliferation Any process that modulates the frequency, rate or extent of T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of T-lymphocyte proliferation|regulation of T lymphocyte proliferation|regulation of T-cell proliferation biological_process owl:Class GO:0050670 biolink:NamedThing regulation of lymphocyte proliferation Any process that modulates the frequency, rate or extent of lymphocyte proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075018 biolink:NamedThing positive regulation of appressorium formation Any process that activates or increases the frequency, rate or extent of symbiont appressorium formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of appressorium formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0075017 biolink:NamedThing regulation of appressorium formation Any process that modulates the frequency, rate or extent of symbiont appressorium formation. tmpzr1t_l9r_go_relaxed.owl regulation of appressorium formation on or near host biological_process owl:Class GO:1903863 biolink:NamedThing P granule assembly The aggregation, arrangement and bonding together of a set of components to form a P granule. tmpzr1t_l9r_go_relaxed.owl germline granule assembly|P granule formation|polar granule formation|germline granule formation|polar granule assembly kmv 2015-02-04T15:27:02Z biological_process owl:Class GO:0030719 biolink:NamedThing P granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of polar granules, cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes. tmpzr1t_l9r_go_relaxed.owl polar granule organisation|P granule organization and biogenesis|polar granule organization and biogenesis GO:0048114 biological_process owl:Class GO:0008612 biolink:NamedThing peptidyl-lysine modification to peptidyl-hypusine The modification of peptidyl-lysine to form hypusine, peptidyl-N6-(4-amino-2-hydroxybutyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl hypusine biosynthetic process from peptidyl-lysine|hypusine synthesis from peptidyl-lysine|hypusine biosynthesis|hypusinylation|hypusine anabolism from peptidyl-lysine|hypusine formation from peptidyl-lysine|hypusine formation|hypusine biosynthetic process|protein hypusination|hypusine anabolism|hypusine synthesis RESID:AA0116 GO:0046515 biological_process owl:Class GO:0051604 biolink:NamedThing protein maturation Any process leading to the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003973 biolink:NamedThing (S)-2-hydroxy-acid oxidase activity Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl L-alpha-hydroxy acid oxidase|L-2-hydroxy acid oxidase|hydroxyacid oxidase A|very-long-chain-(S)-2-hydroxy-acid oxidase activity|hydroxy-acid oxidase A activity|medium-chain-(S)-2-hydroxy-acid oxidase activity|glycolate oxidase activity|long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity|hydroxy-acid oxidase B activity https://github.com/geneontology/go-ontology/issues/21795 MetaCyc:S-2-HYDROXY-ACID-OXIDASE-RXN|Reactome:R-HSA-6787811|MetaCyc:RXN-969|RHEA:16789|EC:1.1.3.15|Reactome:R-HSA-389842 GO:0052853|GO:0008891|GO:0052852|GO:0052854 molecular_function owl:Class GO:0050071 biolink:NamedThing lysyltransferase activity Catalysis of the reaction: L-lysyl-tRNA + phosphatidylglycerol = tRNA + 3-phosphatidyl-1'-(3'-O-L-lysyl)glycerol. tmpzr1t_l9r_go_relaxed.owl L-lysyl-tRNA:phosphatidylglycerol O3-lysyltransferase activity|L-lysyl-tRNA:phosphatidylglycerol 3-O-lysyltransferase activity EC:2.3.2.3|MetaCyc:LYSYLTRANSFERASE-RXN|RHEA:10668 molecular_function owl:Class GO:0030203 biolink:NamedThing glycosaminoglycan metabolic process The chemical reactions and pathways involving glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. tmpzr1t_l9r_go_relaxed.owl glycosaminoglycan metabolism biological_process owl:Class GO:0046933 biolink:NamedThing proton-transporting ATP synthase activity, rotational mechanism Enables the synthesis of ATP from ADP and phosphate by the transfer of protons from one side of a membrane to the other by a rotational mechanism driven by a gradient according to the reaction: ADP + H2O + phosphate + H+(in) -> ATP + H+(out). tmpzr1t_l9r_go_relaxed.owl hydrogen ion transporting two-sector ATPase activity|H+-transporting ATP synthase activity|hydrogen ion translocating F-type ATPase activity|hydrogen ion transporting ATP synthase activity, rotational mechanism https://github.com/geneontology/go-ontology/issues/19380 MetaCyc:ATPSYN-RXN|Reactome:R-HSA-164832|EC:7.1.2.2|TC:3.A.2.1.1|RHEA:57720 molecular_function owl:Class GO:0050978 biolink:NamedThing magnetoreception by sensory perception of electrical stimulus The series of events required for an organism to receive an electrical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Movement in a magnetic field results in an induced electric field, which can be perceived by organisms such as elasmobranch fish. tmpzr1t_l9r_go_relaxed.owl magnetoreception, sensory perception of electrical stimulus|magnetoreception through electrical stimulus|magnetoreception by electrical stimulus|magnetoreception, using electrical stimulus biological_process owl:Class GO:0050952 biolink:NamedThing sensory perception of electrical stimulus The series of events required for an organism to receive a sensory electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047091 biolink:NamedThing L-lysine 6-monooxygenase (NADPH) activity Catalysis of the reaction: L-lysine + NADPH + O(2) = N(6)-hydroxy-L-lysine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl L-lysine 6-monooxygenase activity|L-lysine,NADPH:oxygen oxidoreductase (6-hydroxylating)|lysine N(6)-hydroxylase activity|lysine N6-hydroxylase activity EC:1.14.13.59|KEGG_REACTION:R00448|RHEA:23228|MetaCyc:1.14.13.59-RXN Note that EC:1.13.12.10 was merged into this term. GO:0008739 molecular_function owl:Class GO:1900433 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to heat Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to heat. tmpzr1t_l9r_go_relaxed.owl up regulation of filamentous growth of a population of unicellular organisms in response to heat|upregulation of filamentous growth of a population of unicellular organisms in response to heat|up-regulation of filamentous growth of a population of unicellular organisms in response to heat|activation of filamentous growth of a population of unicellular organisms in response to heat di 2012-04-25T05:54:23Z biological_process owl:Class GO:1900431 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to heat Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to heat. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:54:05Z biological_process owl:Class GO:0019676 biolink:NamedThing ammonia assimilation cycle The pathway by which ammonia is processed and incorporated into a cell. In an energy-rich (glucose-containing), nitrogen-poor environment, glutamine synthetase and glutamate synthase form an ammonia assimilatory cycle, in which ammonia is incorporated into L-glutamate to form L-glutamine, which then combines with alpha-ketoglutarate to regenerate L-glutamate. This ATP-dependent cycle is essential for nitrogen-limited growth and for steady-state growth with some sources of nitrogen. tmpzr1t_l9r_go_relaxed.owl glutamate metabolic process via glutamine and ammonia|glutamate metabolism via glutamine and ammonia MetaCyc:PWY-3282|MetaCyc:AMMASSIM-PWY biological_process owl:Class GO:0006541 biolink:NamedThing glutamine metabolic process The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl glutamine metabolism biological_process owl:Class GO:1900592 biolink:NamedThing violaceol II catabolic process The chemical reactions and pathways resulting in the breakdown of violaceol II. tmpzr1t_l9r_go_relaxed.owl violaceol II catabolism|violaceol II breakdown|violaceol II degradation di 2012-05-15T06:51:43Z biological_process owl:Class GO:1900591 biolink:NamedThing violaceol II metabolic process The chemical reactions and pathways involving violaceol II. tmpzr1t_l9r_go_relaxed.owl violaceol II metabolism di 2012-05-15T06:51:21Z biological_process owl:Class GO:0034284 biolink:NamedThing response to monosaccharide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. tmpzr1t_l9r_go_relaxed.owl response to monosaccharide stimulus biological_process owl:Class GO:0009743 biolink:NamedThing response to carbohydrate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. tmpzr1t_l9r_go_relaxed.owl response to carbohydrate stimulus biological_process owl:Class GO:0039003 biolink:NamedThing pronephric field specification The process in which regions of the embryo are delineated into the area in which the pronephric kidney will develop. tmpzr1t_l9r_go_relaxed.owl pronephric kidney field specification bf 2010-07-02T09:28:16Z biological_process owl:Class GO:0039017 biolink:NamedThing pattern specification involved in pronephros development Any developmental process that results in the creation of defined areas or spaces within the pronephros to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl pattern specification involved in pronephric kidney development bf 2010-07-02T10:04:39Z biological_process owl:Class GO:2001038 biolink:NamedThing regulation of cellular response to drug Any process that modulates the frequency, rate or extent of cellular response to drug. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-27T04:12:19Z biological_process owl:Class GO:0006356 biolink:NamedThing regulation of transcription by RNA polymerase I Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol I promoter|regulation of transcription from RNA polymerase I promoter biological_process owl:Class GO:0018608 biolink:NamedThing 1-indanone dioxygenase activity Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3-hydroxy-1-indanone. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0416 molecular_function owl:Class GO:0045476 biolink:NamedThing nurse cell apoptotic process Any apoptotic process in a nurse cell. During late oogenesis, following the transfer of substances from the nurse cells to the oocyte, nurse cell remnants are cleared from the egg chamber by apoptotic process. tmpzr1t_l9r_go_relaxed.owl nurse cell programmed cell death by apoptosis|nurse cell apoptosis|programmed cell death of nurse cells by apoptosis|invertebrate nurse cell apoptosis|apoptosis of nurse cells biological_process owl:Class GO:0071684 biolink:NamedThing organism emergence from protective structure The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-19T04:23:55Z biological_process owl:Class GO:0018845 biolink:NamedThing 2-hydroxychromene-2-carboxylate isomerase activity Catalysis of the reaction: 2-hydroxychromene-2-carboxylate = (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate. (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate is also known as trans-o-hydroxybenzylidenepyruvate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNN-386|RHEA:27401|UM-BBD_reactionID:r0337|EC:5.99.1.4|KEGG_REACTION:R05137 molecular_function owl:Class GO:0022015 biolink:NamedThing radial glial cell division in pallium The division of a radial glial cell in the pallium. A radial glial cell is a precursor cell that gives rise to neurons and astrocytes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051363 biolink:NamedThing peptidoglycan-protein cross-linking via L-alanyl-pentaglycyl-murein The process of linking a protein to peptidoglycan via a carboxy terminal alanine carboxyl group through a pentaglycyl peptide to the lysine or diaminopimelic acid of the peptidoglycan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0383 Note that this modification may be unique to the species Finegoldia (Peptostreptococcus) magnus. biological_process owl:Class GO:0018104 biolink:NamedThing peptidoglycan-protein cross-linking The process of covalently linking peptidoglycan (murein) to proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000641 biolink:NamedThing regulation of early endosome to late endosome transport Any process that modulates the frequency, rate or extent of early endosome to late endosome transport. tmpzr1t_l9r_go_relaxed.owl vk 2011-04-21T11:20:02Z biological_process owl:Class GO:0080141 biolink:NamedThing regulation of jasmonic acid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of jasmonic acid. tmpzr1t_l9r_go_relaxed.owl dhl 2009-05-19T04:28:39Z biological_process owl:Class GO:0000123 biolink:NamedThing histone acetyltransferase complex A protein complex that possesses histone acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl histone acetylase complex Note that this term represents a location, not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'histone acetyltransferase activity ; GO:0004402'. cellular_component owl:Class GO:0034233 biolink:NamedThing regulation of cell wall chitin catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cell wall chitin. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall chitin breakdown|regulation of cell wall chitin catabolism|regulation of cell wall chitin degradation biological_process owl:Class GO:0034222 biolink:NamedThing regulation of cell wall chitin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chitin in a cell wall. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall chitin metabolism biological_process owl:Class GO:0044069 biolink:NamedThing modulation by symbiont of host anion transport The process in which a symbiont organism modulates the anion transport, the directed movement of anions, atoms or small molecules with a net negative charge, into, out of or within a cell, or between cells, of its host organism. tmpzr1t_l9r_go_relaxed.owl modification of host anion transport by symbiont biological_process owl:Class GO:1903401 biolink:NamedThing L-lysine transmembrane transport The directed movement of L-lysine across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-01T13:45:56Z biological_process owl:Class GO:1902475 biolink:NamedThing L-alpha-amino acid transmembrane transport The directed movement of L-alpha-amino acid across a membrane. tmpzr1t_l9r_go_relaxed.owl kmv 2013-10-25T15:17:39Z biological_process owl:Class GO:1990049 biolink:NamedThing retrograde neuronal dense core vesicle transport The directed movement of neuronal dense core vesicles along axonal microtubules towards the cell body. tmpzr1t_l9r_go_relaxed.owl retrograde dense core granule transport|retrograde dense core granule trafficking pr 2013-02-19T13:31:44Z biological_process owl:Class GO:0008090 biolink:NamedThing retrograde axonal transport The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl retrograde axon cargo transport biological_process owl:Class GO:0071671 biolink:NamedThing regulation of smooth muscle cell chemotaxis Any process that modulates the frequency, rate, or extent of smooth muscle cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-16T01:42:03Z biological_process owl:Class GO:0102999 biolink:NamedThing UDP-glucose:2-hydroxylamino-4,6-dinitrotoluene-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 2-hydroxylamino-4,6-dinitrotoluene <=> 2-hydroxylamino-4,6-dinitrotoluene-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9743 molecular_function owl:Class GO:0042472 biolink:NamedThing inner ear morphogenesis The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009232 biolink:NamedThing riboflavin catabolic process The chemical reactions and pathways resulting in the breakdown of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). tmpzr1t_l9r_go_relaxed.owl riboflavin breakdown|vitamin G catabolism|riboflavin catabolism|vitamin B2 catabolic process|riboflavin degradation|vitamin G catabolic process|vitamin B2 catabolism biological_process owl:Class GO:0031439 biolink:NamedThing positive regulation of mRNA cleavage Any process that activates or increases the frequency, rate or extent of mRNA cleavage. tmpzr1t_l9r_go_relaxed.owl upregulation of mRNA cleavage|stimulation of mRNA cleavage|up-regulation of mRNA cleavage|activation of mRNA cleavage|up regulation of mRNA cleavage biological_process owl:Class GO:1903313 biolink:NamedThing positive regulation of mRNA metabolic process Any process that activates or increases the frequency, rate or extent of mRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of mRNA metabolic process|up-regulation of mRNA metabolism|positive regulation of mRNA metabolism|up regulation of mRNA metabolism|activation of mRNA metabolism|activation of mRNA metabolic process|upregulation of mRNA metabolic process|upregulation of mRNA metabolism|up regulation of mRNA metabolic process vw 2014-08-18T11:52:42Z biological_process owl:Class GO:1900796 biolink:NamedThing terrequinone A biosynthetic process The chemical reactions and pathways resulting in the formation of terrequinone A. tmpzr1t_l9r_go_relaxed.owl terrequinone A anabolism|terrequinone A biosynthesis|terrequinone A formation|terrequinone A synthesis di 2012-06-04T09:45:48Z biological_process owl:Class GO:1904214 biolink:NamedThing positive regulation of iodide transmembrane transport Any process that activates or increases the frequency, rate or extent of iodide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up regulation of iodide transmembrane transport|upregulation of iodide transmembrane transport|activation of iodide transmembrane transport|up-regulation of iodide transmembrane transport sl 2015-05-14T19:00:14Z biological_process owl:Class GO:1904203 biolink:NamedThing positive regulation of iodide transport Any process that activates or increases the frequency, rate or extent of iodide transport. tmpzr1t_l9r_go_relaxed.owl up regulation of iodide transport|activation of iodide transport|upregulation of iodide transport|up-regulation of iodide transport sl 2015-05-08T15:20:09Z biological_process owl:Class GO:0002825 biolink:NamedThing regulation of T-helper 1 type immune response Any process that modulates the frequency, rate, or extent of a T-helper 1 type immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002128 biolink:NamedThing tRNA nucleoside ribose methylation The process that results in the modification of the sugar of a nucleoside in tRNA at the 2'O position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905380 biolink:NamedThing regulation of snRNA transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of snRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl regulation of snRNA transcription from RNA polymerase II promoter|regulation of snRNA transcription from Pol II promoter bhm 2016-08-18T13:39:20Z biological_process owl:Class GO:0045734 biolink:NamedThing regulation of acetate catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of acetate, the anion of acetic acid. tmpzr1t_l9r_go_relaxed.owl regulation of acetate breakdown|regulation of acetate catabolism|regulation of acetate degradation biological_process owl:Class GO:0002258 biolink:NamedThing positive regulation of kinin cascade Any process that activates or increases the frequency, rate, or extent of the kinin cascade. tmpzr1t_l9r_go_relaxed.owl up-regulation of kinin cascade|stimulation of kinin cascade|up regulation of kinin cascade|upregulation of kinin cascade|activation of kinin cascade biological_process owl:Class GO:0050624 biolink:NamedThing vomilenine reductase activity Catalysis of the reaction: 1,2-dihydrovomilenine + NADP(+) = H(+) + NADPH + vomilenine. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydrovomilenine:NADP+ oxidoreductase activity RHEA:16409|EC:1.5.1.32|MetaCyc:1.5.1.32-RXN|KEGG_REACTION:R05878 molecular_function owl:Class GO:0071463 biolink:NamedThing cellular response to humidity Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T11:33:55Z biological_process owl:Class GO:0009270 biolink:NamedThing response to humidity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086072 biolink:NamedThing AV node cell-bundle of His cell adhesion involved in cell communication The attachment of an AV node cell to an bundle of His cell via adhesion molecules that results in the cells being juxtaposed so that they can communicate. tmpzr1t_l9r_go_relaxed.owl atrioventricular node cell-bundle of His cell adhesion involved in cell communication dph 2011-11-22T09:49:59Z biological_process owl:Class GO:0086042 biolink:NamedThing cardiac muscle cell-cardiac muscle cell adhesion The attachment of one cardiomyocyte to another cardiomyocyte via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl cardiomyocyte-cardiomyocyte adhesion tb 2011-11-11T04:06:25Z biological_process owl:Class GO:0031384 biolink:NamedThing regulation of initiation of mating projection growth Any process that modulates the frequency, rate, or extent of the start of mating projection formation by unicellular fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031383 biolink:NamedThing regulation of mating projection assembly Any process that modulates the frequency, rate, or extent of mating projection formation by unicellular fungi. tmpzr1t_l9r_go_relaxed.owl regulation of mating projection biogenesis biological_process owl:Class GO:1990761 biolink:NamedThing growth cone lamellipodium A thin sheetlike process extended by the leading edge of an axonal or dendritic growth cone; contains a dense meshwork of actin filaments. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-05T22:31:19Z cellular_component owl:Class GO:0140405 biolink:NamedThing spindle pole body-led chromosome movement during mitotic interphase A microtubule-based process in which chromosomes migrate as a result of rapid spindle pole body (SPB) and centrosome oscillations during mitotic interphase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19149|https://github.com/geneontology/go-ontology/issues/18373 pg 2019-12-10T09:13:47Z biological_process owl:Class GO:0007018 biolink:NamedThing microtubule-based movement A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070762 biolink:NamedThing nuclear pore transmembrane ring A subcomplex of the nuclear pore complex (NPC) that spans the nuclear membrane and anchors the NPC to the nuclear envelope. In S. cerevisiae, the transmembrane ring is composed of Pom152p, Pom34p, and Ndc1p. In vertebrates, it is composed of Gp210, Ndc1, and Pom121. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometime referred to as the Ndc1 complex. tmpzr1t_l9r_go_relaxed.owl NDC1 subcomplex|NDC1 complex mah 2009-06-29T11:02:56Z cellular_component owl:Class GO:1902951 biolink:NamedThing negative regulation of dendritic spine maintenance Any process that stops, prevents or reduces the frequency, rate or extent of dendritic spine maintenance. tmpzr1t_l9r_go_relaxed.owl down regulation of dendritic spine maintenance|downregulation of dendritic spine maintenance|down-regulation of dendritic spine maintenance|inhibition of dendritic spine maintenance sjp 2014-05-02T08:48:53Z biological_process owl:Class GO:0015121 biolink:NamedThing phosphoenolpyruvate:phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphoenolpyruvate(out) + phosphate(in) = phosphoenolpyruvate(in) + phosphate(out). tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate/phosphate translocator|PPT molecular_function owl:Class GO:0015315 biolink:NamedThing organophosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: organophosphate(out) + inorganic phosphate(in) = organophosphate(in) + inorganic phosphate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019628 biolink:NamedThing urate catabolic process The chemical reactions and pathways resulting in the breakdown of urate, the anion of uric acid, 2,6,8-trioxypurine. tmpzr1t_l9r_go_relaxed.owl urate catabolism|uric acid catabolic process|urate degradation|urate breakdown MetaCyc:P165-PWY biological_process owl:Class GO:0051523 biolink:NamedThing cell growth mode switching, monopolar to bipolar The process in which a cell switches from monopolar cell growth to bipolar cell growth. tmpzr1t_l9r_go_relaxed.owl NETO|new end take off biological_process owl:Class GO:0061389 biolink:NamedThing regulation of direction of cell growth Any process that modulates the direction of cell growth. tmpzr1t_l9r_go_relaxed.owl dph 2011-07-14T10:19:46Z biological_process owl:Class GO:1900818 biolink:NamedThing ochratoxin A biosynthetic process The chemical reactions and pathways resulting in the formation of ochratoxin A. tmpzr1t_l9r_go_relaxed.owl Ochratoxin A biosynthesis|Ochratoxin A anabolism|Ochratoxin A synthesis|Ochratoxin A formation di 2012-06-04T10:13:32Z biological_process owl:Class GO:1905555 biolink:NamedThing positive regulation of blood vessel branching Any process that activates or increases the frequency, rate or extent of blood vessel branching. tmpzr1t_l9r_go_relaxed.owl up regulation of branching involved in blood vessel morphogenesis|upregulation of patterning of blood vessels|activation of branching involved in blood vessel morphogenesis|up regulation of patterning of blood vessels|up-regulation of branching involved in blood vessel morphogenesis|up-regulation of patterning of blood vessels|upregulation of branching involved in blood vessel morphogenesis|activation of patterning of blood vessels|positive regulation of branching involved in blood vessel morphogenesis nc 2016-10-12T14:19:49Z biological_process owl:Class GO:1905553 biolink:NamedThing regulation of blood vessel branching Any process that modulates the frequency, rate or extent of blood vessel branching. tmpzr1t_l9r_go_relaxed.owl regulation of branching involved in blood vessel morphogenesis nc 2016-10-12T14:19:33Z biological_process owl:Class GO:0051105 biolink:NamedThing regulation of DNA ligation Any process that modulates the frequency, rate or extent of DNA ligation, the re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990770 biolink:NamedThing small intestine smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry in the intestine between the stomach and the large intestine. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-11T18:02:33Z biological_process owl:Class GO:0046251 biolink:NamedThing limonene catabolic process The chemical reactions and pathways resulting in the breakdown of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene. tmpzr1t_l9r_go_relaxed.owl limonene catabolism|limonene degradation|limonene breakdown biological_process owl:Class GO:0048780 biolink:NamedThing positive regulation of erythrophore differentiation Any process that activates or increases the frequency, rate or extent of erythrophore differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of erythrophore differentiation|upregulation of erythrophore differentiation|activation of erythrophore differentiation|up-regulation of erythrophore differentiation|up regulation of erythrophore differentiation biological_process owl:Class GO:0048778 biolink:NamedThing regulation of erythrophore differentiation Any process that modulates the frequency, rate or extent of erythrophore differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900005 biolink:NamedThing positive regulation of serine-type endopeptidase activity Any process that activates or increases the frequency, rate or extent of serine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of blood coagulation factor activity|up regulation of blood coagulation factor activity|up regulation of serine-type endopeptidase activity kmv 2012-01-09T10:03:29Z biological_process owl:Class GO:1900003 biolink:NamedThing regulation of serine-type endopeptidase activity Any process that modulates the frequency, rate or extent of serine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of blood coagulation factor activity kmv 2012-01-09T10:03:15Z biological_process owl:Class GO:1902865 biolink:NamedThing positive regulation of embryonic camera-type eye development Any process that activates or increases the frequency, rate or extent of embryonic camera-type eye development. tmpzr1t_l9r_go_relaxed.owl upregulation of embryonic eye development|activation of embryonic eye development|up-regulation of embryonic camera-type eye development|activation of embryonic camera-type eye development|up-regulation of embryonic eye development|positive regulation of embryonic eye development|up regulation of embryonic eye development|up regulation of embryonic camera-type eye development|upregulation of embryonic camera-type eye development mr 2014-04-03T15:24:12Z biological_process owl:Class GO:0010633 biolink:NamedThing negative regulation of epithelial cell migration Any process that stops, prevents, or reduces the frequency, rate or extent of epithelial cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990185 biolink:NamedThing regulation of lymphatic vascular permeability Any process that modulates the extent to which lymphatic vessels can be pervaded by fluid. tmpzr1t_l9r_go_relaxed.owl sl 2013-09-11T15:36:22Z biological_process owl:Class GO:0043114 biolink:NamedThing regulation of vascular permeability Any process that modulates the extent to which blood vessels can be pervaded by fluid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000160 biolink:NamedThing negative regulation of planar cell polarity pathway involved in heart morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:03:25Z biological_process owl:Class GO:1904136 biolink:NamedThing regulation of convergent extension involved in notochord morphogenesis Any process that modulates the frequency, rate or extent of convergent extension involved in notochord morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:21:30Z biological_process owl:Class GO:0060524 biolink:NamedThing dichotomous subdivision of prostate epithelial cord terminal unit The process in which a prostate epithelial cord bifurcates at its end. tmpzr1t_l9r_go_relaxed.owl prostate epithelial cord bifurcation biological_process owl:Class GO:0003271 biolink:NamedThing smoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the modulation of the frequency, rate or extent of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl hedgehog signaling pathway involved in regulation of second heart field cardioblast proliferation|smoothened receptor signalling pathway involved in regulation of secondary heart field cardioblast proliferation|hh signaling pathway involved in regulation of second heart field cardioblast proliferation|smoothened receptor signaling pathway involved in regulation of secondary heart field cardioblast proliferation|smoothened receptor signaling pathway involved in regulation of second heart field cardioblast proliferation dph 2009-10-15T02:48:32Z biological_process owl:Class GO:0071154 biolink:NamedThing G-protein alpha(i)1-synembrin complex A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(i)1 subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl Ric-8A G(i) alpha-2 subunit complex|Ric-8A G(i) alpha-1 subunit complex mah 2009-11-16T04:57:46Z cellular_component owl:Class GO:1901227 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter involved in heart development Any negative regulation of transcription from RNA polymerase II promoter that is involved in heart development. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription from RNA polymerase II promoter involved in dorsal vessel development|negative regulation of transcription from Pol II promoter involved in heart development|negative regulation of global transcription from Pol II promoter involved in heart development|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|down regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|inhibition of transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of global transcription from Pol II promoter involved in dorsal vessel development|downregulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|down regulation of global transcription from RNA polymerase II promoter involved in heart development|negative regulation of transcription from Pol II promoter involved in dorsal vessel development|down-regulation of transcription from RNA polymerase II promoter involved in cardiac development|down regulation of transcription from RNA polymerase II promoter involved in cardiac development|downregulation of global transcription from RNA polymerase II promoter involved in cardiac development|down-regulation of global transcription from RNA polymerase II promoter involved in heart development|down-regulation of global transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|negative regulation of transcription from Pol II promoter involved in cardiac development|negative regulation of global transcription from Pol II promoter involved in cardiac development|downregulation of transcription from RNA polymerase II promoter involved in heart development|inhibition of transcription from RNA polymerase II promoter involved in heart development|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|downregulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|downregulation of global transcription from RNA polymerase II promoter involved in heart development|down regulation of global transcription from RNA polymerase II promoter involved in cardiac development|inhibition of global transcription from RNA polymerase II promoter involved in heart development|down-regulation of transcription from RNA polymerase II promoter involved in heart development|inhibition of global transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|down regulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|downregulation of transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of transcription from RNA polymerase II promoter involved in cardiac development|down-regulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|down regulation of transcription from RNA polymerase II promoter involved in heart development|down-regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|inhibition of global transcription from RNA polymerase II promoter involved in dorsal vessel development pr 2012-08-07T12:50:30Z biological_process owl:Class GO:0008940 biolink:NamedThing nitrate reductase activity Catalysis of the reaction: nitrite + acceptor = nitrate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl nitrite:acceptor oxidoreductase|nitrite:(acceptor) oxidoreductase|nitrate reductase (acceptor)|respiratory nitrate reductase activity RHEA:21068|MetaCyc:NITRATREDUCT-RXN|EC:1.7.99.4 molecular_function owl:Class GO:1905531 biolink:NamedThing positive regulation of uracil import across plasma membrane Any process that activates or increases the frequency, rate or extent of uracil import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-05T21:03:56Z biological_process owl:Class GO:1990491 biolink:NamedThing methane biosynthetic process from methanol and hydrogen The chemical reactions and pathways resulting in the formation of methane from methanol and hydrogen. tmpzr1t_l9r_go_relaxed.owl methane biosynthesis from methanol and hydrogen|methanogenesis from methanol and hydrogen tt 2014-09-21T01:08:40Z biological_process owl:Class GO:1902421 biolink:NamedThing hydrogen metabolic process The chemical reactions and pathways involving H2 (dihydrogen). tmpzr1t_l9r_go_relaxed.owl H2 metabolism|molecular hydrogen metabolism|dihydrogen metabolism jl 2013-09-18T14:34:23Z biological_process owl:Class GO:0018837 biolink:NamedThing 2-hydroxy-2H-benzo[h]chromene-2-carboxylate isomerase activity Catalysis of the reaction: 2-hydroxy-2 H-benzo[h]chromene-2-carboxylate = cis -4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0502 molecular_function owl:Class GO:0016856 biolink:NamedThing racemase and epimerase activity, acting on hydroxy acids and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a hydroxy acid molecule. tmpzr1t_l9r_go_relaxed.owl EC:5.1.2.- molecular_function owl:Class GO:0098845 biolink:NamedThing postsynaptic endosome An endosomal compartment that is part of the post-synapse. Only early and recycling endosomes are typically present in the postsynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005768 biolink:NamedThing endosome A vacuole to which materials ingested by endocytosis are delivered. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1720343330|Wikipedia:Endosome cellular_component owl:Class GO:0051310 biolink:NamedThing metaphase plate congression The alignment of chromosomes at the metaphase plate (spindle equator), a plane halfway between the poles of the spindle. tmpzr1t_l9r_go_relaxed.owl chromosome congression biological_process owl:Class GO:1904487 biolink:NamedThing cellular response to 17alpha-ethynylestradiol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 17alpha-ethynylestradiol stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-07-15T22:31:42Z biological_process owl:Class GO:1901163 biolink:NamedThing regulation of trophoblast cell migration Any process that modulates the frequency, rate or extent of trophoblast cell migration. tmpzr1t_l9r_go_relaxed.owl vk 2012-07-19T07:53:06Z biological_process owl:Class GO:0140681 biolink:NamedThing histone H3-tri/dimethyl-lysine-36 demethylase activity Catalysis of the removal of a methyl group from a tri- or a dimethyl-lysine residue at position 36 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3K36me3 demethylase activity|histone H3K36me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 RHEA:60236|EC:1.14.11.69|MetaCyc:RXN-8660 pg 2021-07-08T14:12:31Z molecular_function owl:Class GO:0051864 biolink:NamedThing histone H3-methyl-lysine-36 demethylase activity Catalysis of the removal of a methyl group from a modified lysine residue at position 36 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone-lysine demethylase activity (H3-K36 specific)|histone H3K36 demethylase activity|histone demethylase activity (H3-K36 specific)|histone-lysine(H3-K36) demethylase activity|[histone-H3]-lysine-36 demethylase activity|histone H3-lysine-36 demethylase activity|histone-lysine (H3-K36) demethylase activity https://github.com/geneontology/go-ontology/issues/21089 molecular_function owl:Class GO:0008503 biolink:NamedThing benzodiazepine receptor activity Combining with benzodiazepines, a class of drugs with hypnotic, anxiolytic, anticonvulsive, amnestic and myorelaxant properties, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'chloride channel activity ; GO:0005254', 'GABA receptor activity ; GO:0016917' and 'inhibitory extracellular ligand-gated ion channel activity ; GO:0005237'. molecular_function owl:Class GO:0061305 biolink:NamedThing maintenance of bipolar cell polarity regulating cell shape The maintenance of established bipolar anisotropic intracellular organization or cell growth patterns that results in the shaping of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-16T09:25:18Z biological_process owl:Class GO:0061246 biolink:NamedThing establishment or maintenance of bipolar cell polarity regulating cell shape Any cellular process that results in the specification, formation or maintenance of a bipolar intracellular organization or cell growth patterns that regulates the shaping of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-23T09:46:01Z biological_process owl:Class GO:0097447 biolink:NamedThing dendritic tree The entire complement of dendrites for a neuron, consisting of each primary dendrite and all its branches. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao172297168 pr 2012-12-17T12:31:49Z cellular_component owl:Class GO:0005784 biolink:NamedThing Sec61 translocon complex A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events. tmpzr1t_l9r_go_relaxed.owl Sec61p-Sbh1p-Sss1p complex https://github.com/geneontology/go-ontology/issues/22000 cellular_component owl:Class GO:0071256 biolink:NamedThing translocon complex A protein complex that constitutes a specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. The complex contains a core heterotrimer of alpha, beta and gamma subunits, and may contain additional proteins. tmpzr1t_l9r_go_relaxed.owl Sec complex-associated translocon complex mah 2009-12-08T02:08:03Z GO:0031206 cellular_component owl:Class GO:0036076 biolink:NamedThing ligamentous ossification Ossification wherein bone tissue forms within ligamentous tissue. tmpzr1t_l9r_go_relaxed.owl Ligamentous ossification may occur via replacement ossification or metaplastic ossification or both in any one instance. bf 2011-12-19T01:57:08Z biological_process owl:Class GO:0003175 biolink:NamedThing tricuspid valve development The progression of the tricuspid valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:18:12Z biological_process owl:Class GO:0030986 biolink:NamedThing low molecular weight kininogen binding Binding to a kininogen of low molecular mass. tmpzr1t_l9r_go_relaxed.owl LK binding|LMW kininogen binding molecular_function owl:Class GO:0030984 biolink:NamedThing kininogen binding Binding to a kininogen, a kinin precursor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043042 biolink:NamedThing amino acid adenylylation by nonribosomal peptide synthase Activation of an amino acid for incorporation into a peptide by a nonribosomal process, catalyzed by subunits of nonribosomal peptide synthase. The amino acid is adenylated at its carboxylate group (ATP-dependent) then transferred to the thiol group of an enzyme-bound phosphopantetheine cofactor. tmpzr1t_l9r_go_relaxed.owl amino acid adenylation by NRPS|amino acid adenylation by nonribosomal peptide synthase biological_process owl:Class GO:0043041 biolink:NamedThing amino acid activation for nonribosomal peptide biosynthetic process Activation of an amino acid for incorporation into a peptide by a nonribosomal process. tmpzr1t_l9r_go_relaxed.owl nonribosomal amino acid activation biological_process owl:Class GO:0030645 biolink:NamedThing glucose catabolic process to butyrate The anaerobic chemical reactions and pathways resulting in the breakdown of glucose, with the production of acetic acid, butyric acid, carbon dioxide (CO2), and dihydrogen; effected by some saccharolytic species of Clostridium, e.g. C. butyricum. tmpzr1t_l9r_go_relaxed.owl butyrate fermentation|glucose fermentation to butyrate biological_process owl:Class GO:0006007 biolink:NamedThing glucose catabolic process The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. tmpzr1t_l9r_go_relaxed.owl glucose breakdown|glucose degradation|glucose catabolism biological_process owl:Class GO:0031871 biolink:NamedThing proteinase activated receptor binding Binding to a proteinase activated receptor. tmpzr1t_l9r_go_relaxed.owl proteinase activated receptor ligand molecular_function owl:Class GO:1905074 biolink:NamedThing negative regulation of tight junction disassembly Any process that stops, prevents or reduces the frequency, rate or extent of tight junction disassembly. tmpzr1t_l9r_go_relaxed.owl down regulation of occluding cell junction disassembly|inhibition of occluding junction disassembly|down-regulation of tight junction disassembly|inhibition of tight junction disassembly|inhibition of occluding cell junction disassembly|down-regulation of occluding cell junction disassembly|downregulation of occluding cell junction disassembly|negative regulation of occluding cell junction disassembly|downregulation of tight junction disassembly|down regulation of tight junction disassembly|downregulation of occluding junction disassembly rl 2016-03-23T19:33:01Z biological_process owl:Class GO:0050939 biolink:NamedThing regulation of early stripe melanocyte differentiation Any process that modulates the frequency, rate or extent of early stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of early stripe melanophore differentiation biological_process owl:Class GO:0003160 biolink:NamedThing endocardium morphogenesis The process in which the anatomical structure of the endocardium is generated and organized. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-01T01:37:26Z biological_process owl:Class GO:0043898 biolink:NamedThing 2,3-dihydroxybiphenyl 1,2-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxybiphenyl + O2 = 2-hydroxy-6-phenylhexa-2,4-dienoic acid. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybiphenyl-1,2-dioxygenase activity|BphC molecular_function owl:Class GO:0014748 biolink:NamedThing negative regulation of tonic skeletal muscle contraction Any process that stops, prevents, or reduces the frequency, rate or extent of tonic skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014746 biolink:NamedThing regulation of tonic skeletal muscle contraction Any process that modulates the frequency, rate or extent of tonic skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031330 biolink:NamedThing negative regulation of cellular catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular catabolic process|negative regulation of cellular degradation|downregulation of cellular catabolic process|negative regulation of cellular breakdown|negative regulation of cellular catabolism|down-regulation of cellular catabolic process|inhibition of cellular catabolic process biological_process owl:Class GO:0010707 biolink:NamedThing globoside biosynthetic process via lactosylceramide The chemical reactions and pathways resulting in the formation of globosides that begins with the formation of lactosylceramides, Gal-beta-(1->4)-Glc-beta-(1->1') ceramides, any compound formed by the replacement of the glycosidic C1 hydroxyl group of lactose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl globoside biosynthesis via lactosylceramide biosynthesis|lactosylceramide biosynthesis leading to globoside|biosynthesis of lactosylceramide precursor to globoside|lactosylceramide biosynthetic process leading to globoside biological_process owl:Class GO:0001576 biolink:NamedThing globoside biosynthetic process The chemical reactions and pathways resulting in the formation of a ceramide with a core structure of GalNAc-beta-(1->3)-Gal-alpha-(1->4)-Glc(I). tmpzr1t_l9r_go_relaxed.owl globoside formation|globoside biosynthesis|globoside anabolism|globoside synthesis biological_process owl:Class GO:1900853 biolink:NamedThing negative regulation of terrequinone A biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of terrequinone A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of terrequinone A biosynthetic process|down-regulation of terrequinone A biosynthetic process|down regulation of terrequinone A biosynthetic process di 2012-06-07T09:47:30Z biological_process owl:Class GO:1900852 biolink:NamedThing regulation of terrequinone A biosynthetic process Any process that modulates the frequency, rate or extent of terrequinone A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of terrequinone A anabolism|regulation of terrequinone A formation|regulation of terrequinone A synthesis|regulation of terrequinone A biosynthesis di 2012-06-07T09:47:09Z biological_process owl:Class GO:0010794 biolink:NamedThing regulation of dolichol biosynthetic process Any process that modulates the frequency, rate or extent of dolichol biosynthesis. Dolichol biosynthesis consists of the chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033485 biolink:NamedThing cyanidin 3-O-glucoside biosynthetic process The chemical reactions and pathways resulting in the formation of cyanidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits. tmpzr1t_l9r_go_relaxed.owl cyanidin 3-O-glucoside anabolism|cyanidin 3-O-glucoside formation|cyanidin 3-O-glucoside synthesis|cyanidin 3-O-glucoside biosynthesis MetaCyc:PWY-5125 biological_process owl:Class GO:0015972 biolink:NamedThing guanosine pentaphosphate metabolic process The chemical reactions and pathways involving guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine pentaphosphate (5'-pppGpp-3') metabolism|guanosine pentaphosphate (5'-pppGpp-3') metabolic process|guanosine pentaphosphate metabolism biological_process owl:Class GO:0034035 biolink:NamedThing purine ribonucleoside bisphosphate metabolic process The chemical reactions and pathways involving a purine ribonucleoside bisphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside bisphosphate metabolism biological_process owl:Class GO:0033113 biolink:NamedThing cyanelle membrane Either of the lipid bilayers that surround a cyanelle and form the cyanelle envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0039520 biolink:NamedThing induction by virus of host autophagy Any process in which a virus activates or increases the frequency, rate or extent of autophagy in the host. tmpzr1t_l9r_go_relaxed.owl activation of host autophagy by virus|positive regulation by virus of host autophagy VZ:846 bf 2011-06-22T04:24:47Z biological_process owl:Class GO:0075044 biolink:NamedThing positive regulation by symbiont of host autophagy Any process in which a symbiont organism increases the frequency, rate or extent of autophagy in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl autophagy of host cells involved in interaction with symbiont|positive regulation by symbiont of host autophagotic process|autophagy of host cells during interaction with symbiont biological_process owl:Class GO:0140040 biolink:NamedThing mitochondrial polycistronic RNA processing The conversion of polycistronic RNA transcribed from a mitochondrial genome into mono- or bi-cistronic RNAs. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-16T07:18:38Z biological_process owl:Class GO:0031426 biolink:NamedThing polycistronic mRNA processing The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110153 biolink:NamedThing RNA NAD-cap (NMN-forming) hydrolase activity Catalysis of the reaction: a 5'-end NAD(+)-phospho-ribonucleoside in mRNA + H2O = a 5'-end phospho-adenosine-phospho-ribonucleoside in mRNA + beta-nicotinamide D-ribonucleotide + 2 H(+). tmpzr1t_l9r_go_relaxed.owl RHEA:60876 This reaction specifically removes the nicotinamide adenine dinucleotide (NAD) cap from a subset of mRNAs by hydrolyzing the diphosphate linkage to produce nicotinamide mononucleotide (NMN) and 5' monophosphate mRNA. kmv 2019-07-08T17:15:59Z molecular_function owl:Class GO:0097543 biolink:NamedThing ciliary inversin compartment Proximal part of the ciliary shaft to which the inversin protein (also called Inv) specifically localizes. The inversin compartment appears to have a different protein composition than the rest of the cilium, although there is no structure that separates it form the distal part of the cilium. tmpzr1t_l9r_go_relaxed.owl inversin compartment|flagellum inversin compartment|Inv compartment of the cilium|flagellar inversin compartment|cilial inversin compartment|cilium inversin compartment Note that cilia and eukaryotic flagella are deemed to be equivalent. pr 2013-12-12T11:14:36Z cellular_component owl:Class GO:0006031 biolink:NamedThing chitin biosynthetic process The chemical reactions and pathways resulting in the formation of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. tmpzr1t_l9r_go_relaxed.owl beta-1,4-linked N-acetylglucosamine biosynthesis|chitin formation|beta-1,4-linked N-acetylglucosamine biosynthetic process|chitin anabolism|chitin synthesis|chitin biosynthesis biological_process owl:Class GO:0006030 biolink:NamedThing chitin metabolic process The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. tmpzr1t_l9r_go_relaxed.owl beta-1,4-linked N-acetylglucosamine metabolism|beta-1,4-linked N-acetylglucosamine metabolic process|chitin metabolism biological_process owl:Class GO:0018393 biolink:NamedThing internal peptidyl-lysine acetylation The addition of an acetyl group to a non-terminal lysine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018394 biolink:NamedThing peptidyl-lysine acetylation The acetylation of peptidyl-lysine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047420 biolink:NamedThing N-acyl-D-amino-acid deacylase activity Catalysis of the reaction: H2O + N-acyl-D-amino acid = D-amino acid + an acid. tmpzr1t_l9r_go_relaxed.owl N-acyl-D-amino acid amidohydrolase activity|D-aminoacylase activity EC:3.5.1.81|RHEA:18309|MetaCyc:3.5.1.81-RXN molecular_function owl:Class GO:1901321 biolink:NamedThing positive regulation of heart induction Any process that activates or increases the frequency, rate or extent of heart induction. tmpzr1t_l9r_go_relaxed.owl up-regulation of heart induction|upregulation of heart induction|up regulation of heart induction|activation of heart induction bf 2012-08-28T15:49:51Z biological_process owl:Class GO:0070302 biolink:NamedThing regulation of stress-activated protein kinase signaling cascade Any process that modulates the frequency, rate or extent of signaling via a stress-activated protein kinase signaling cascade. tmpzr1t_l9r_go_relaxed.owl regulation of stress-activated protein kinase signaling pathway|regulation of stress-activated protein kinase signalling pathway|regulation of SAPK signaling pathway biological_process owl:Class GO:1902531 biolink:NamedThing regulation of intracellular signal transduction Any process that modulates the frequency, rate or extent of intracellular signal transduction. tmpzr1t_l9r_go_relaxed.owl regulation of intracellular protein kinase cascade|regulation of signal transduction via intracellular signaling cascade|regulation of intracellular signaling cascade|regulation of intracellular signaling pathway|regulation of intracellular signaling chain|regulation of intracellular signal transduction pathway|regulation of signal transmission via intracellular cascade bf 2013-12-02T11:32:52Z GO:0010627 biological_process owl:Class GO:0014727 biolink:NamedThing positive regulation of extraocular skeletal muscle development Any process that activates, maintains or increases the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048643 biolink:NamedThing positive regulation of skeletal muscle tissue development Any process that activates, maintains or increases the rate of skeletal muscle tissue development. tmpzr1t_l9r_go_relaxed.owl up regulation of skeletal muscle development|activation of skeletal muscle development|upregulation of skeletal muscle development|up-regulation of skeletal muscle development|stimulation of skeletal muscle development biological_process owl:Class GO:0008635 biolink:NamedThing activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase in the context of an apoptotic process and is mediated by cytochrome c. tmpzr1t_l9r_go_relaxed.owl caspase activation via cytochrome c|activation of caspase activity by cytochrome c biological_process owl:Class GO:0006919 biolink:NamedThing activation of cysteine-type endopeptidase activity involved in apoptotic process Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase in the context of an apoptotic process. tmpzr1t_l9r_go_relaxed.owl activation of caspase activity|caspase activation|activation of metacaspase activity This term should be used when the annotation refers to a process that occurs in a context of apoptotic cell death. To annotate gene products involved in activation of cysteine-type endopeptidases in other cellular process (e.g., cell cycle arrest) that do not necessarily develop into an apoptotic process, please use the more general parent term GO:0097202. Examples of 'activation of cysteine-type endopeptidase activity involved in apoptotic process' are cytochrome c and Apaf1. When cytochrome c is released from mitochondria and forms a complex with Apaf1, they form a scaffolding platform in which the pro-caspase 9 is bound (the 'apoptosome'). The caspase is then cleaved and activated. Cytochrome c and Apaf1 are therefore involved in the conversion of the zymogen procaspase 9 to the active form of the caspase. biological_process owl:Class GO:0015724 biolink:NamedThing formate transport The directed movement of formate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120313 biolink:NamedThing regulation of oocyte karyosome formation Any process that modulates the frequency, rate or extent of oocyte karyosome formation, the chromosome organization process in which meiotic chromosomes in the oocyte nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21298 krc 2021-04-19T21:34:15Z biological_process owl:Class GO:1905656 biolink:NamedThing positive regulation of artery smooth muscle contraction Any process that activates or increases the frequency, rate or extent of artery smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl activation of artery smooth muscle contraction|up regulation of artery smooth muscle contraction|upregulation of artery smooth muscle contraction|up-regulation of artery smooth muscle contraction rph 2016-11-09T12:35:01Z biological_process owl:Class GO:0062030 biolink:NamedThing negative regulation of stress granule assembly Any process that stops or decreases the rate, frequency or extent of stress-granule assembly, the aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T19:19:32Z biological_process owl:Class GO:0062028 biolink:NamedThing regulation of stress granule assembly Any process that modulates the rate, frequency or extent of stress granule assembly, the aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T19:12:41Z biological_process owl:Class GO:0009831 biolink:NamedThing plant-type cell wall modification involved in multidimensional cell growth The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall modification during multidimensional cell growth|cell wall modification during cell expansion biological_process owl:Class GO:0009827 biolink:NamedThing plant-type cell wall modification The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall modification biological_process owl:Class GO:0050869 biolink:NamedThing negative regulation of B cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of B cell activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of B-cell activation|downregulation of B cell activation|down regulation of B cell activation|negative regulation of B lymphocyte activation|down-regulation of B cell activation|inhibition of B cell activation|negative regulation of B-lymphocyte activation biological_process owl:Class GO:0098737 biolink:NamedThing protein insertion into plasma membrane The process that results in the incorporation of a protein into a plasma membrane. Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051205 biolink:NamedThing protein insertion into membrane The process that results in the incorporation of a protein into a biological membrane. Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers. tmpzr1t_l9r_go_relaxed.owl protein-membrane insertion|integral membrane protein positioning|integral membrane protein localization|membrane protein positioning|membrane protein localization biological_process owl:Class GO:0003923 biolink:NamedThing GPI-anchor transamidase activity Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-162836 molecular_function owl:Class GO:0004197 biolink:NamedThing cysteine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl caspase activity|lysosomal cysteine-type endopeptidase|thiol endopeptidase activity|metacaspase activity Reactome:R-HSA-1236948|Reactome:R-HSA-9013895|Reactome:R-HSA-201640|Reactome:R-HSA-350158|Reactome:R-HSA-202939|Reactome:R-HSA-351871|Reactome:R-HSA-351849|Reactome:R-HSA-211651|Reactome:R-HSA-352268|Reactome:R-HSA-2130336|Reactome:R-HSA-5357828|Reactome:R-HSA-350651|Reactome:R-HSA-9697750|Reactome:R-HSA-9694377|Reactome:R-HSA-9684340|Reactome:R-HSA-211186|Reactome:R-HSA-9694551|Reactome:R-HSA-201636|Reactome:R-HSA-202967|Reactome:R-HSA-9603534|Reactome:R-HSA-2130349|Reactome:R-HSA-9694625|Reactome:R-HSA-201628|Reactome:R-HSA-9694441|Reactome:R-HSA-5682377|Reactome:R-HSA-9012556|Reactome:R-HSA-5660663|Reactome:R-HSA-9694601|Reactome:R-HSA-351877|Reactome:R-HSA-351913|Reactome:R-HSA-264871|Reactome:R-HSA-9684273|Reactome:R-HSA-1678920|Reactome:R-HSA-418846|Reactome:R-HSA-1678981|Reactome:R-HSA-202969|Reactome:R-HSA-9647999|Reactome:R-HSA-418845|Reactome:R-HSA-201639|Reactome:R-HSA-139952|Reactome:R-HSA-9694732|Reactome:R-HSA-9684336|Reactome:R-HSA-351894|Reactome:R-HSA-201637|Reactome:R-HSA-202966|Reactome:R-HSA-202947|Reactome:R-HSA-201629|Reactome:R-HSA-351901|Reactome:R-HSA-201630|Reactome:R-HSA-202917|Reactome:R-HSA-351936|Reactome:R-HSA-2130706|Reactome:R-HSA-9684351|Reactome:R-HSA-2028697|Reactome:R-HSA-350319|Reactome:R-HSA-418852|Reactome:R-HSA-9684321|Reactome:R-HSA-448703|Reactome:R-HSA-9686930|Reactome:R-HSA-202960|Reactome:R-HSA-201634|Reactome:R-HSA-212552|Reactome:R-HSA-139898|Reactome:R-HSA-201608|Reactome:R-HSA-2562564|Reactome:R-HSA-9693929|Reactome:R-HSA-264865|Reactome:R-HSA-114252|Reactome:R-HSA-351876|Reactome:R-HSA-2028692|EC:3.4.22.-|Reactome:R-HSA-201622|Reactome:R-HSA-6814387|Reactome:R-HSA-201603|Reactome:R-HSA-350318|Reactome:R-HSA-201631|Reactome:R-HSA-9684352|Reactome:R-HSA-2130504|Reactome:R-HSA-211190|Reactome:R-HSA-114261|Reactome:R-HSA-933532|Reactome:R-HSA-114259|Reactome:R-HSA-201611|Reactome:R-HSA-3465448|Reactome:R-HSA-5634228|Reactome:R-HSA-9684309|Reactome:R-HSA-201595|Reactome:R-HSA-5681987|Reactome:R-HSA-9694338 molecular_function owl:Class GO:0010916 biolink:NamedThing negative regulation of very-low-density lipoprotein particle clearance Any process that decreases the rate, frequency or extent of very-low-density lipoprotein particle clearance. Very-low-density lipoprotein particle clearance is the process in which a very-low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl negative regulation of VLDL clearance|negative regulation of VLDL particle clearance biological_process owl:Class GO:0042817 biolink:NamedThing pyridoxal metabolic process The chemical reactions and pathways involving 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxal metabolism biological_process owl:Class GO:1900194 biolink:NamedThing negative regulation of oocyte maturation Any process that stops, prevents or reduces the frequency, rate or extent of oocyte maturation. tmpzr1t_l9r_go_relaxed.owl inhibition of oocyte maturation|down regulation of oocyte maturation|downregulation of oocyte maturation|down-regulation of oocyte maturation kmv 2012-03-19T09:41:27Z biological_process owl:Class GO:1905455 biolink:NamedThing positive regulation of myeloid progenitor cell differentiation Any process that activates or increases the frequency, rate or extent of myeloid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of myeloid progenitor cell differentiation|up-regulation of myeloid progenitor cell differentiation|activation of myeloid progenitor cell differentiation|upregulation of myeloid progenitor cell differentiation rz 2016-09-16T12:32:33Z biological_process owl:Class GO:1905453 biolink:NamedThing regulation of myeloid progenitor cell differentiation Any process that modulates the frequency, rate or extent of myeloid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl rz 2016-09-16T12:32:18Z biological_process owl:Class GO:1901066 biolink:NamedThing syringal lignin biosynthetic process The chemical reactions and pathways resulting in the formation of syringal lignin. tmpzr1t_l9r_go_relaxed.owl syringal lignin formation|syringal lignin anabolism|syringal lignin synthesis|syringal lignin biosynthesis|S-lignin biosynthetic process tt 2012-06-29T03:48:41Z biological_process owl:Class GO:1901064 biolink:NamedThing syringal lignin metabolic process The chemical reactions and pathways involving syringal lignin. tmpzr1t_l9r_go_relaxed.owl S-lignin metabolic process|syringal lignin metabolism tt 2012-06-29T03:48:11Z biological_process owl:Class GO:0007083 biolink:NamedThing mitotic chromosome decondensation The cell cycle process in which chromosome structure is altered from the condensed form taken on during mitosis to the relaxed disperse form held in resting cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051898 biolink:NamedThing negative regulation of protein kinase B signaling Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B. tmpzr1t_l9r_go_relaxed.owl negative regulation of PKB signaling cascade|inhibition of protein kinase B signaling cascade|down-regulation of protein kinase B signaling cascade|negative regulation of PKB signalling cascade|down regulation of protein kinase B signaling cascade|negative regulation of AKT signaling cascade|negative regulation of AKT signalling cascade|downregulation of protein kinase B signaling cascade|negative regulation of protein kinase B signaling cascade|negative regulation of protein kinase B signalling cascade biological_process owl:Class GO:0072727 biolink:NamedThing cellular response to CCCP Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a CCCP stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to carbonyl cyanide m-chlorophenyl hydrazone mah 2012-05-31T11:16:43Z biological_process owl:Class GO:0098522 biolink:NamedThing neuromuscular junction of skeletal muscle fiber A neuromuscular junction in which the target muscle cell is a skeletal muscle fiber. tmpzr1t_l9r_go_relaxed.owl In vertebrates, the term 'neuromuscular junction' is limited to synapses targeting skeletal muscle fibers - all of which are cholinergic and excitatory. Both inhibitory and excitatory neuromuscular junctions exist in invertebrates, utilizing a range of neurotransmitters including glutamate, GABA and 5-HT. dos 2013-10-14T12:04:32Z cellular_component owl:Class GO:0098981 biolink:NamedThing cholinergic synapse A synapse that uses acetylcholine as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0150159 biolink:NamedThing negative regulation of interleukin-34 production Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-34 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-34 biosynthetic process bc 2020-01-06T16:31:12Z GO:0150162 biological_process owl:Class GO:0150157 biolink:NamedThing regulation of interleukin-34 production Any process that modulates the frequency, rate or extent of interleukin-34 production. tmpzr1t_l9r_go_relaxed.owl interleukin-34 biosynthetic process|regulation of interleukin-34 biosynthetic process bc 2020-01-06T16:30:44Z GO:0150156|GO:0150160 biological_process owl:Class GO:1903934 biolink:NamedThing positive regulation of DNA primase activity Any process that activates or increases the frequency, rate or extent of DNA primase activity. tmpzr1t_l9r_go_relaxed.owl activation of DNA primase activity|up-regulation of DNA primase activity|upregulation of DNA primase activity|up regulation of DNA primase activity mah 2015-02-12T14:28:45Z biological_process owl:Class GO:0051347 biolink:NamedThing positive regulation of transferase activity Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. tmpzr1t_l9r_go_relaxed.owl stimulation of transferase activity|activation of transferase activity|up regulation of transferase activity|upregulation of transferase activity|transferase activator|up-regulation of transferase activity This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. biological_process owl:Class GO:0099520 biolink:NamedThing ion antiporter activity involved in regulation of presynaptic membrane potential Any ion antiporter activity, occurring in the presynaptic membrane, that is involved in regulation of presynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ion antiporter activity involved in regulation of pre-synaptic membrane potential molecular_function owl:Class GO:0015297 biolink:NamedThing antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). tmpzr1t_l9r_go_relaxed.owl countertransporter activity|exchanger|solute:solute antiporter activity|porter|solute:solute exchange|ion antiporter activity|antiport|exchange transporter activity Reactome:R-HSA-2731002|Reactome:R-HSA-2730692|Reactome:R-HSA-2730959 GO:0099516|GO:0015300 molecular_function owl:Class GO:0101003 biolink:NamedThing ficolin-1-rich granule membrane The lipid bilayer surrounding a ficolin-1-rich granule. tmpzr1t_l9r_go_relaxed.owl mec cellular_component owl:Class GO:1900806 biolink:NamedThing ergot alkaloid catabolic process The chemical reactions and pathways resulting in the breakdown of ergot alkaloid. tmpzr1t_l9r_go_relaxed.owl ergot alkaloids degradation|ergot alkaloid breakdown|ergot alkaloid degradation|ergot alkaloids breakdown|ergot alkaloids catabolism|ergot alkaloid catabolism|ergot alkaloids catabolic process di 2012-06-04T09:57:39Z biological_process owl:Class GO:0016143 biolink:NamedThing S-glycoside metabolic process The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. tmpzr1t_l9r_go_relaxed.owl thioglycoside metabolic process|thioglycoside metabolism|S-glycoside metabolism biological_process owl:Class GO:0021740 biolink:NamedThing principal sensory nucleus of trigeminal nerve development The process whose specific outcome is the progression of the pontine nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl pontine nucleus development Note that this term was placed as a child of 'brain development' because the nucleus spans multiple brain regions. biological_process owl:Class GO:0021730 biolink:NamedThing trigeminal sensory nucleus development The process whose specific outcome is the progression of the trigeminal sensory nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl Note that this term was placed as a child of 'brain development' because the nucleus spans multiple brain regions from midbrain to spinal cord. biological_process owl:Class GO:0042746 biolink:NamedThing circadian sleep/wake cycle, wakefulness The part of the circadian sleep/wake cycle where the organism is not asleep. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022410 biolink:NamedThing circadian sleep/wake cycle process A behavioral process involved in the cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047419 biolink:NamedThing N-acetylgalactosamine-6-phosphate deacetylase activity Catalysis of the reaction: H2O + N-acetyl-D-galactosamine 6-phosphate = acetate + D-galactosamine 6-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:18149|EC:3.5.1.25|MetaCyc:3.5.1.80-RXN molecular_function owl:Class GO:0046083 biolink:NamedThing adenine metabolic process The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. tmpzr1t_l9r_go_relaxed.owl adenine metabolism biological_process owl:Class GO:0045926 biolink:NamedThing negative regulation of growth Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism. tmpzr1t_l9r_go_relaxed.owl inhibition of growth|downregulation of growth|down-regulation of growth|down regulation of growth biological_process owl:Class GO:0031000 biolink:NamedThing response to caffeine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006783 biolink:NamedThing heme biosynthetic process The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors. tmpzr1t_l9r_go_relaxed.owl heme anabolism|heme formation|heme synthesis|haem biosynthesis|heme biosynthesis|haem biosynthetic process MetaCyc:HEMESYN2-PWY biological_process owl:Class GO:0102451 biolink:NamedThing kaempferide 3-O-methyltransferase activity Catalysis of the reaction: kaempferide + S-adenosyl-L-methionine <=> 3,4'-dimethylkaempferol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13937 molecular_function owl:Class GO:1900883 biolink:NamedThing 17-methylnonadec-1-ene biosynthetic process The chemical reactions and pathways resulting in the formation of 17-methylnonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl 17-methylnonadec-1-ene anabolism|17-methylnonadec-1-ene formation|17-methylnonadec-1-ene biosynthesis|17-methylnonadec-1-ene synthesis tt 2012-06-13T02:35:59Z biological_process owl:Class GO:1900882 biolink:NamedThing 17-methylnonadec-1-ene metabolic process The chemical reactions and pathways involving 17-methylnonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl 17-methylnonadec-1-ene metabolism tt 2012-06-13T02:35:37Z biological_process owl:Class GO:0044838 biolink:NamedThing cell quiescence A specialized resting state that cells enter in response to cues from the cell's environment. Quiescence is characterized by the absence of cell growth and division, by a reprogramming of global gene expression, and by changes characteristic of the organism and specific cell type. Depending on external conditions, quiescence may persist until cell death or cells may resume cell growth and division. In some cell types or under certain conditions, cellular metabolism may proceed. tmpzr1t_l9r_go_relaxed.owl G0 phase|cellular quiescence|cell cycle quiescence|quiescence Note that terminally differentiated cells in higher eukaryotes are typically quiescent but metabolically active. Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). Also, note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). jl 2014-02-26T16:15:51Z biological_process owl:Class GO:0031864 biolink:NamedThing EP1 subtype prostaglandin E2 receptor binding Binding to an EP1 subtype prostaglandin E2 receptor. tmpzr1t_l9r_go_relaxed.owl EP1 subtype prostaglandin E2 receptor ligand|prostanoid EP1 receptor binding molecular_function owl:Class GO:0033719 biolink:NamedThing 2-oxo-acid reductase activity Catalysis of the reaction: a (2R)-hydroxy-carboxylate + acceptor = a 2-oxo-carboxylate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 2-oxoacid reductase activity|(2R)-hydroxycarboxylate-viologen-oxidoreductase activity|(2R)-hydroxy-carboxylate:acceptor oxidoreductase activity|HVOR RHEA:23664|MetaCyc:1.1.99.30-RXN|EC:1.1.99.30 molecular_function owl:Class GO:1990361 biolink:NamedThing PKM2 pyruvate kinase complex A protein complex capable of pyruvate kinase activity. PKM2 only exists as homotetramer when bound to beta-d-fructofuranose 1,6-bisphosphate (CHEBI:28013). tmpzr1t_l9r_go_relaxed.owl PKM2 homotetramer An example of this is PKM2 in human (P14618) in PMID:24606918 (inferred from direct assay). bhm 2014-04-17T14:16:24Z cellular_component owl:Class GO:1902912 biolink:NamedThing pyruvate kinase complex A protein complex which is capable of pyruvate kinase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PKM2 in human (P14618) in PMID:24606918 (inferred from direct assay). bhm 2014-04-17T14:11:41Z cellular_component owl:Class GO:0010767 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a UV damage stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006974 biolink:NamedThing cellular response to DNA damage stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. tmpzr1t_l9r_go_relaxed.owl cellular DNA damage response|response to genotoxic stress|DNA damage response|response to DNA damage stimulus GO:0034984 biological_process owl:Class GO:0034213 biolink:NamedThing quinolinate catabolic process The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. tmpzr1t_l9r_go_relaxed.owl quinolinate degradation|quinolinate catabolism|quinolinate breakdown biological_process owl:Class GO:0046874 biolink:NamedThing quinolinate metabolic process The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. tmpzr1t_l9r_go_relaxed.owl quinolinate metabolism biological_process owl:Class GO:1900549 biolink:NamedThing N',N'',N'''-triacetylfusarinine C metabolic process The chemical reactions and pathways involving N',N'',N'''-triacetylfusarinine C. tmpzr1t_l9r_go_relaxed.owl N',N'',N'''-triacetylfusarinine C metabolism di 2012-05-15T12:59:06Z biological_process owl:Class GO:0032950 biolink:NamedThing regulation of beta-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving beta-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of beta-glucan metabolism biological_process owl:Class GO:0103090 biolink:NamedThing methylthiohexylmalate dehydrogenase activity Catalysis of the reaction: 3-(6'-methylthio)hexylmalate <=> H+ + 2-oxo-9-methylthiononanoate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4174 molecular_function owl:Class GO:0098581 biolink:NamedThing detection of external biotic stimulus The series of events in which an external biotic stimulus is detected and converted into a molecular signal. An external biotic stimulus is defined as one caused or produced by a living organism other than the one being stimulated. tmpzr1t_l9r_go_relaxed.owl detection of exogenous biotic stimulus dos 2014-01-22T14:20:16Z biological_process owl:Class GO:1902229 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway in response to DNA damage Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl regulation of DNA damage response, signal transduction resulting in induction of apoptosis rl 2013-06-14T09:39:52Z biological_process owl:Class GO:1902817 biolink:NamedThing negative regulation of protein localization to microtubule Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to microtubule. tmpzr1t_l9r_go_relaxed.owl inhibition of protein localization to microtubule|down-regulation of protein localization to microtubule|inhibition of protein localisation to microtubule|negative regulation of protein localisation to microtubule|down regulation of protein localisation to microtubule|downregulation of protein localization to microtubule|down regulation of protein localization to microtubule|downregulation of protein localisation to microtubule|down-regulation of protein localisation to microtubule tb 2014-03-27T22:07:18Z biological_process owl:Class GO:1902816 biolink:NamedThing regulation of protein localization to microtubule Any process that modulates the frequency, rate or extent of protein localization to microtubule. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to microtubule tb 2014-03-27T22:07:12Z biological_process owl:Class GO:1902778 biolink:NamedThing response to alkane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkane stimulus. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to alkane GO:1990373 biological_process owl:Class GO:0071380 biolink:NamedThing cellular response to prostaglandin E stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin E stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:34:43Z biological_process owl:Class GO:0034695 biolink:NamedThing response to prostaglandin E Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin E stimulus. tmpzr1t_l9r_go_relaxed.owl response to prostaglandin E stimulus biological_process owl:Class GO:0017116 biolink:NamedThing single-stranded DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of a DNA helix. tmpzr1t_l9r_go_relaxed.owl single-stranded DNA-dependent ATP-dependent DNA helicase activity|ssDNA-dependent ATPase activity|ssDNA-dependent ATP-dependent DNA helicase activity|single-stranded DNA-dependent ATPase activity GO:0043142 molecular_function owl:Class GO:0003678 biolink:NamedThing DNA helicase activity Unwinding of a DNA helix, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent DNA helicase activity Reactome:R-HSA-5693589|EC:3.6.4.12 GO:0003679|GO:0004003 molecular_function owl:Class GO:0019983 biolink:NamedThing interleukin-9 binding Binding to interleukin-9. tmpzr1t_l9r_go_relaxed.owl IL-9 binding molecular_function owl:Class GO:0018097 biolink:NamedThing protein-chromophore linkage via peptidyl-S-4-hydroxycinnamyl-L-cysteine The synthesis of the chromophore S-4-hydroxycinnamyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl protein amino acid cinnamylation RESID:AA0207 biological_process owl:Class GO:0048456 biolink:NamedThing stamen structural organization The process that contributes to the act of creating the structural organization of the stamen. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl stamen structural organisation GO:0048428 biological_process owl:Class GO:0048450 biolink:NamedThing floral organ structural organization The process that contributes to the act of creating the structural organization of floral organs. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl floral organ structural organisation GO:0048435 biological_process owl:Class GO:0046109 biolink:NamedThing uridine biosynthetic process The chemical reactions and pathways resulting in the formation of uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids. tmpzr1t_l9r_go_relaxed.owl uridine biosynthesis|uridine formation|uridine anabolism|uridine synthesis biological_process owl:Class GO:0046132 biolink:NamedThing pyrimidine ribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside anabolism|pyrimidine ribonucleoside biosynthesis|pyrimidine ribonucleoside synthesis|pyrimidine ribonucleoside formation biological_process owl:Class GO:0044761 biolink:NamedThing negative regulation by symbiont of host cholinergic synaptic transmission Any process in which a symbiont organism negatively regulates cholinergic synaptic transmission, communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse via the neurotransmitter choline, in its host organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-12-06T15:43:53Z biological_process owl:Class GO:0044760 biolink:NamedThing modulation by symbiont of host cholinergic synaptic transmission Any process in which a symbiont organism modulates the frequency, rate or extent of cholinergic synaptic transmission, communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse via the neurotransmitter choline, in its host organism. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host cholinergic synaptic transmission jl 2012-12-06T15:39:46Z biological_process owl:Class GO:1904716 biolink:NamedThing positive regulation of chaperone-mediated autophagy Any process that activates or increases the frequency, rate or extent of chaperone-mediated autophagy. tmpzr1t_l9r_go_relaxed.owl up-regulation of chaperone-mediated autophagy|positive regulation of CMA|up regulation of chaperone-mediated autophagy|upregulation of chaperone-mediated autophagy|upregulation of CMA|up regulation of CMA|activation of chaperone-mediated autophagy|activation of CMA|up-regulation of CMA pad 2015-10-06T08:49:15Z biological_process owl:Class GO:1904714 biolink:NamedThing regulation of chaperone-mediated autophagy Any process that modulates the frequency, rate or extent of chaperone-mediated autophagy. tmpzr1t_l9r_go_relaxed.owl regulation of CMA pad 2015-10-06T08:49:02Z biological_process owl:Class GO:1904330 biolink:NamedThing positive regulation of myofibroblast contraction Any process that activates or increases the frequency, rate or extent of myofibroblast contraction. tmpzr1t_l9r_go_relaxed.owl activation of MFB contraction|upregulation of MFB contraction|upregulation of myofibroblast contraction|up-regulation of MF contraction|up regulation of myofibroblast contraction|up regulation of MFB contraction|activation of MF contraction|positive regulation of MFB contraction|up regulation of MF contraction|upregulation of MF contraction|up-regulation of MFB contraction|positive regulation of MF contraction|up-regulation of myofibroblast contraction|activation of myofibroblast contraction sl 2015-06-11T15:30:41Z biological_process owl:Class GO:1990191 biolink:NamedThing cobalamin transport complex Protein complex facilitating ATP-dependent cobalamin (vitamin B12) transport through inner cell membrane (periplasm to cytoplasm) in Gram-negative bacteria. In E. coli the system is composed of a periplasmic cobalamin-binding protein (BtuF), an integral membrane homodimer, BtuC, and a cytoplasmic ATP-binding homodimer BtuD. tmpzr1t_l9r_go_relaxed.owl vitamin B12-transporting BtuCDF complex|vitamin B12 transport complex|cobalamin-transporting BtuCDF complex|BtuCDF complex bhm 2013-09-12T14:20:19Z cellular_component owl:Class GO:0000215 biolink:NamedThing tRNA 2'-phosphotransferase activity Catalysis of the reaction: 2'-phospho-[ligated tRNA] + NAD+ = mature tRNA + ADP ribose 1'',2''-phosphate + nicotinamide + H2O. This reaction is the transfer of the splice junction 2-phosphate from ligated tRNA to NAD+ to produce ADP-ribose 1'-2' cyclic phosphate. tmpzr1t_l9r_go_relaxed.owl Tpt1|Tpt1p|2'-phosphotransferase activity|yeast 2'-phosphotransferase activity|2'-phospho-[ligated tRNA]:NAD+ phosphotransferase activity|2'-phospho-tRNA:NAD+ phosphotransferase activity MetaCyc:2.7.1.160-RXN|RHEA:23324|EC:2.7.1.160 GO:0008665 molecular_function owl:Class GO:0021874 biolink:NamedThing Wnt signaling pathway involved in forebrain neuroblast division The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell that contributes to the self renewal of neuroblasts in the forebrain. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway in forebrain neuroblast division|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt-activated signaling pathway involved in forebrain neuroblast division biological_process owl:Class GO:0045487 biolink:NamedThing gibberellin catabolic process The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. tmpzr1t_l9r_go_relaxed.owl gibberellin catabolism|gibberellic acid catabolic process|gibberellic acid breakdown|gibberellic acid catabolism|gibberellic acid degradation biological_process owl:Class GO:0016103 biolink:NamedThing diterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of diterpenoid compounds, terpenoids with four isoprene units. tmpzr1t_l9r_go_relaxed.owl diterpenoid breakdown|diterpene catabolism|diterpene catabolic process|diterpenoid catabolism|diterpenoid degradation biological_process owl:Class GO:1903610 biolink:NamedThing regulation of calcium-dependent ATPase activity Any process that modulates the frequency, rate or extent of calcium-dependent ATPase activity. tmpzr1t_l9r_go_relaxed.owl sl 2014-11-18T00:42:49Z biological_process owl:Class GO:0036182 biolink:NamedThing asperthecin metabolic process The chemical reactions and pathways involving asperthecin, an anthraquinone pigment obtained from the mould Aspergillus nidulans. tmpzr1t_l9r_go_relaxed.owl asperthecin metabolism bf 2012-04-16T11:35:24Z biological_process owl:Class GO:0019748 biolink:NamedThing secondary metabolic process The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. tmpzr1t_l9r_go_relaxed.owl secondary metabolite metabolism|secondary metabolite metabolic process|secondary metabolism Wikipedia:Secondary_metabolism biological_process owl:Class GO:1904059 biolink:NamedThing regulation of locomotor rhythm Any process that modulates the frequency, rate or extent of locomotor rhythm. tmpzr1t_l9r_go_relaxed.owl regulation of circadian locomotor activity rhythm sl 2015-03-18T20:38:52Z biological_process owl:Class GO:0001554 biolink:NamedThing luteolysis The lysis or structural demise of the corpus luteum. During normal luteolysis, two closely related events occur. First, there is loss of the capacity to synthesize and secrete progesterone (functional luteolysis) followed by loss of the cells that comprise the corpus luteum (structural luteolysis). Preventing luteolysis is crucial to maintain pregnancy. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Luteolysis biological_process owl:Class GO:0006768 biolink:NamedThing biotin metabolic process The chemical reactions and pathways involving biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. tmpzr1t_l9r_go_relaxed.owl vitamin H metabolic process|biotin metabolism|vitamin H metabolism|vitamin B7 metabolism|vitamin B7 metabolic process Wikipedia:Biotin biological_process owl:Class GO:0010309 biolink:NamedThing acireductone dioxygenase [iron(II)-requiring] activity Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-methylthio-2-oxobutanoate + formate + H(+). tmpzr1t_l9r_go_relaxed.owl E-2'|ARD'|aci-reductone dioxygenase|acireductone dioxygenase activity|1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate-forming)|ARD1|acireductone dioxygenase (Fe2+-requiring) activity|1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase activity|2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase KEGG_REACTION:R07364|EC:1.13.11.54|MetaCyc:R147-RXN|Reactome:R-HSA-1237119|RHEA:24504 molecular_function owl:Class GO:0102455 biolink:NamedThing anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + an anthocyanidin-3-O-beta-D-glucoside = UDP + H+ + an anthocyanidin 3-O-sophoroside. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13965|EC:2.4.1.297|RHEA:35419 molecular_function owl:Class GO:0005347 biolink:NamedThing ATP transmembrane transporter activity Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl GO:0005348 molecular_function owl:Class GO:0000295 biolink:NamedThing adenine nucleotide transmembrane transporter activity Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-389652 molecular_function owl:Class GO:0140049 biolink:NamedThing regulation of endocardial cushion to mesenchymal transition Any process that modulates the frequency, rate or extent of endocardial cushion to mesenchymal transition. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-23T15:57:00Z biological_process owl:Class GO:0090373 biolink:NamedThing negative regulation of glycerol transport Any process that decreases the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:30:22Z biological_process owl:Class GO:0071718 biolink:NamedThing sodium-independent icosanoid transport The directed, sodium-independent, movement of icosanoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Icosanoids are unsaturated C20 fatty acids and skeletally related compounds. tmpzr1t_l9r_go_relaxed.owl sodium-independent eicosanoid transport mah 2010-03-10T03:05:13Z biological_process owl:Class GO:0022878 biolink:NamedThing protein-N(PI)-phosphohistidine-sucrose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sucrose(out) = protein histidine + sucrose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl sucrose PTS transporter activity MetaCyc:SUCROSEPHOSPHO-RXN|RHEA:49236 molecular_function owl:Class GO:0008515 biolink:NamedThing sucrose transmembrane transporter activity Enables the transfer of sucrose from one side of a membrane to the other. Sucrose is the disaccharide O-beta-D-fructofuranosyl-(2->1)-alpha-D-glucopyranoside, a sweet-tasting, non-reducing sugar isolated industrially from sugar beet or sugar cane. tmpzr1t_l9r_go_relaxed.owl sucrose permease activity|sucrose permease (PTS) activity GO:0019188 molecular_function owl:Class GO:0008219 biolink:NamedThing cell death Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538). tmpzr1t_l9r_go_relaxed.owl necrosis|accidental cell death This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term. biological_process owl:Class GO:1905777 biolink:NamedThing regulation of exonuclease activity Any process that modulates the frequency, rate or extent of exonuclease activity. tmpzr1t_l9r_go_relaxed.owl regulation of exonuclease IX activity nc 2016-12-21T21:32:07Z biological_process owl:Class GO:2000321 biolink:NamedThing positive regulation of T-helper 17 cell differentiation Any process that activates or increases the frequency, rate or extent of T-helper 17 cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of T-helper 17 cell development mah 2011-01-18T01:45:08Z biological_process owl:Class GO:0045624 biolink:NamedThing positive regulation of T-helper cell differentiation Any process that activates or increases the frequency, rate or extent of T-helper cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of T-helper cell differentiation|stimulation of T-helper cell differentiation|positive regulation of T-helper cell development|up-regulation of T-helper cell differentiation|activation of T-helper cell differentiation|up regulation of T-helper cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0004053 biolink:NamedThing arginase activity Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea. tmpzr1t_l9r_go_relaxed.owl L-arginase activity|arginine transamidinase activity|L-arginine amidinohydrolase activity|canavanase activity|arginine amidinase activity Reactome:R-HSA-70569|EC:3.5.3.1|MetaCyc:ARGINASE-RXN|RHEA:20569|Reactome:R-HSA-452036 molecular_function owl:Class GO:0005362 biolink:NamedThing low-affinity glucose:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low-affinity glucose-sodium cotransporter activity Reactome:R-HSA-429567 molecular_function owl:Class GO:0005412 biolink:NamedThing glucose:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + Na+(out) = glucose(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/glucose symporter activity Reactome:R-HSA-5656356|Reactome:R-HSA-5658163|Reactome:R-HSA-429613|Reactome:R-HSA-8932955|Reactome:R-HSA-189208 molecular_function owl:Class GO:0099010 biolink:NamedThing modification of postsynaptic structure Any process that modifies the structure of a postsynapse. tmpzr1t_l9r_go_relaxed.owl synapse remodelling This class does not cover assembly or disassembly of postsynapses, only the modification/remodelling of existing ones. biological_process owl:Class GO:0099563 biolink:NamedThing modification of synaptic structure Any process that modifies the structure/morphology of a synapse. tmpzr1t_l9r_go_relaxed.owl synapse remodelling This class does not cover assembly or disassembly of synapses, only the modification/remodelling of existing ones. biological_process owl:Class GO:0099592 biolink:NamedThing endocytosed synaptic vesicle processing via endosome The process in which endocytosed synaptic vesicles fuse to the presynaptic endosome followed by sorting of synaptic vesicle components and budding of new synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle processing via endosome involved in synaptic vesicle recycling biological_process owl:Class GO:0099532 biolink:NamedThing synaptic vesicle endosomal processing The process in which synaptic vesicles fuse to the presynaptic endosome followed by sorting of synaptic vesicle components and budding of new synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle processing via endosome This covers processing of synaptic vesicles trafficked to synapse as well as of endocytosed vesicles as part of recycling. It is there for not part of the synaptic vesicle cycle. biological_process owl:Class GO:0060853 biolink:NamedThing Notch signaling pathway involved in arterial endothelial cell fate commitment The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the commitment of a cell to an arterial endothelial cell fate. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway involved in arterial endothelial cell fate commitment dph 2009-08-12T11:54:49Z biological_process owl:Class GO:0007219 biolink:NamedThing Notch signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway|Notch receptor signalling pathway|Notch-receptor signalling pathway|Notch-receptor signaling pathway|N signalling pathway|Notch receptor signaling pathway|N signaling pathway Wikipedia:Notch_signaling_pathway GO:0030179 biological_process owl:Class GO:1903435 biolink:NamedThing positive regulation of constitutive secretory pathway Any process that activates or increases the frequency, rate or extent of constitutive secretory pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of constitutive secretory pathway|up-regulation of constitutive secretory pathway|up regulation of constitutive secretory pathway|activation of constitutive secretory pathway als 2014-09-15T15:07:48Z biological_process owl:Class GO:0018427 biolink:NamedThing copper incorporation into metallo-sulfur cluster The incorporation of copper into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl copper incorporation into metallo-sulphur cluster biological_process owl:Class GO:0042559 biolink:NamedThing pteridine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. tmpzr1t_l9r_go_relaxed.owl pteridine and derivative biosynthetic process|pteridine-containing compound synthesis|pteridine and derivative biosynthesis|pteridine-containing compound biosynthesis|pterin biosynthesis|pterin biosynthetic process|pteridine-containing compound anabolism|pteridine-containing compound formation biological_process owl:Class GO:0061225 biolink:NamedThing mesonephric extraglomerular mesangial cell proliferation involved in mesonephros development The multiplication or reproduction of extraglomerular glomerular mesangium cells in the mesonephros by cell division, resulting in the expansion of their population. Extraglomerular mesangial cells (also known as lacis cells, Goormaghtigh cells) are light-staining cells in the kidney found outside the glomerulus, near the vascular pole and macula densa. tmpzr1t_l9r_go_relaxed.owl mesonephric lacis cell proliferation|mesonephric Goormaghtigh proliferation dph 2010-08-19T01:34:59Z biological_process owl:Class GO:0070972 biolink:NamedThing protein localization to endoplasmic reticulum A process in which a protein is transported to, or maintained in, a location within the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl protein localisation in endoplasmic reticulum|protein localization in ER|protein localization in endoplasmic reticulum mah 2009-10-02T12:43:34Z biological_process owl:Class GO:0033365 biolink:NamedThing protein localization to organelle A process in which a protein is transported to, or maintained in, a location within an organelle. tmpzr1t_l9r_go_relaxed.owl protein localisation to organelle|protein localization in organelle biological_process owl:Class GO:0046691 biolink:NamedThing intracellular canaliculus An apical plasma membrane part that forms a narrow enfolded luminal membrane channel, lined with numerous microvilli, that appears to extend into the cytoplasm of the cell. A specialized network of intracellular canaliculi is a characteristic feature of parietal cells of the gastric mucosa in vertebrates. tmpzr1t_l9r_go_relaxed.owl canalicular membrane cellular_component owl:Class GO:1900358 biolink:NamedThing negative regulation of nigerotriose transport Any process that stops, prevents or reduces the frequency, rate or extent of nigerotriose transport. tmpzr1t_l9r_go_relaxed.owl downregulation of nigerotriose transport|down regulation of nigerotriose transport|inhibition of nigerotriose transport|down-regulation of nigerotriose transport tt 2012-04-06T02:18:21Z biological_process owl:Class GO:1905787 biolink:NamedThing regulation of detection of mechanical stimulus involved in sensory perception of touch Any process that modulates the frequency, rate or extent of detection of mechanical stimulus involved in sensory perception of touch. tmpzr1t_l9r_go_relaxed.owl regulation of perception of touch, detection of mechanical stimulus|regulation of sensory detection of mechanical stimulus during perception of touch|regulation of perception of touch, sensory detection of mechanical stimulus|regulation of tactition, sensory detection of mechanical stimulus|regulation of perception of touch, sensory transduction of mechanical stimulus|regulation of sensory transduction of mechanical stimulus during perception of touch hbye 2017-01-09T15:11:04Z biological_process owl:Class GO:0051931 biolink:NamedThing regulation of sensory perception Any process that modulates the frequency, rate or extent of sensory perception, the series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001867 biolink:NamedThing complement activation, lectin pathway Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes. tmpzr1t_l9r_go_relaxed.owl complement cascade, lectin pathway Note that proteins such as mannose-binding lectin (MBL) and certain serum ficolins can activate the lectin complement pathway. biological_process owl:Class GO:0005343 biolink:NamedThing organic acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: organic acid(out) + Na+(out) = organic acid(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/chloride-dependent organic acid cotransporter activity|sodium:dicarboxylate/tricarboxylate symporter activity Reactome:R-HSA-8876312 molecular_function owl:Class GO:1903011 biolink:NamedThing negative regulation of bone development Any process that stops, prevents or reduces the frequency, rate or extent of bone development. tmpzr1t_l9r_go_relaxed.owl downregulation of bone development|inhibition of bone development|down regulation of bone development|down-regulation of bone development mr 2014-05-13T22:42:00Z biological_process owl:Class GO:1901263 biolink:NamedThing positive regulation of sorocarp spore cell differentiation Any process that activates or increases the frequency, rate or extent of sorocarp spore cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of sorocarp spore cell differentiation|upregulation of sorocarp spore cell differentiation|up-regulation of sorocarp spore cell differentiation|activation of sorocarp spore cell differentiation jl 2012-08-15T09:44:58Z biological_process owl:Class GO:1990590 biolink:NamedThing ATF1-ATF4 transcription factor complex Transcription factor complex consisting of ATF1 and ATF4 subunits that is capable of binding to cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3') of the GRP78 (HSPA5) promoter. Involved in the ER stress response pathway. tmpzr1t_l9r_go_relaxed.owl An example of this is ATF1in human (P18846) in PMID:12871976 (inferred from physical interaction). bhm 2014-12-15T14:25:56Z cellular_component owl:Class GO:0035872 biolink:NamedThing nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway A series of molecular signals generated as a consequence of a nucleotide-binding domain, leucine rich repeat containing receptor (NLR) binding to one of its physiological ligands. NLRs are cytoplasmic receptors defined by their tripartite domain architecture that contains: a variable C-terminus, a middle nucleotide-binding domain, and a LRR domain that is variable in the repeats composition and number. The NLR signaling pathway begins with binding of a ligand to a NLR receptor and ends with regulation of a downstream cellular process. tmpzr1t_l9r_go_relaxed.owl NOD-like receptor signaling pathway|nucleotide-binding domain, leucine rich repeat containing receptor signal transduction pathway|NLR signaling pathway|nucleotide-binding domain leucine-rich repeat containing receptor signaling pathway|nucleotide-binding domain, leucine rich repeat containing receptor signalling pathway|nucleotide-binding domain, leucine rich repeat containing receptor signal transduction bf 2011-05-26T03:30:36Z biological_process owl:Class GO:0044468 biolink:NamedThing envenomation resulting in modulation of blood coagulation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the modulation of the frequency, rate or extent of blood coagulation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of blood coagulation in other organism jl 2012-01-19T01:24:10Z biological_process owl:Class GO:0043520 biolink:NamedThing regulation of myosin II filament assembly Any process that modulates the frequency, rate or extent of the formation of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901735 biolink:NamedThing (R)-mevalonic acid metabolic process The chemical reactions and pathways involving (R)-mevalonic acid. tmpzr1t_l9r_go_relaxed.owl (R)-mevalonic acid metabolism|(R) mevalonate metabolism yaf 2013-01-11T11:25:50Z biological_process owl:Class GO:1900241 biolink:NamedThing positive regulation of phenotypic switching Any process that activates or increases the frequency, rate or extent of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl activation of phenotypic dimorphism|up regulation of phenotypic dimorphism|positive regulation of phenotypic dimorphism|activation of phenotypic switching|up-regulation of phenotypic dimorphism|up regulation of phenotypic switching|upregulation of phenotypic dimorphism|up-regulation of phenotypic switching|upregulation of phenotypic switching di 2012-03-28T01:49:34Z biological_process owl:Class GO:0102734 biolink:NamedThing brassinolide synthase activity Catalysis of the reaction: H+ + castasterone + NADPH + O2 <=> brassinolide + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-720 molecular_function owl:Class GO:2000130 biolink:NamedThing positive regulation of octopamine signaling pathway Any process that activates or increases the frequency, rate or extent of octopamine signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of octopamine signalling pathway mah 2010-09-29T09:29:47Z biological_process owl:Class GO:2000127 biolink:NamedThing positive regulation of octopamine or tyramine signaling pathway Any process that activates or increases the frequency, rate or extent of octopamine or tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of octopamine or tyramine signalling pathway|positive regulation of octopamine/tyramine signaling pathway mah 2010-09-29T09:27:19Z biological_process owl:Class GO:0016149 biolink:NamedThing translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003747 biolink:NamedThing translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. tmpzr1t_l9r_go_relaxed.owl GO:0003749|GO:0003748 molecular_function owl:Class GO:0000155 biolink:NamedThing phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. tmpzr1t_l9r_go_relaxed.owl two-component sensor activity|two-component system sensor activity|two-component sensor molecule EC:2.7.3.- molecular_function owl:Class GO:0004673 biolink:NamedThing protein histidine kinase activity Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine. tmpzr1t_l9r_go_relaxed.owl EnvZ|protein kinase (histidine) (ambiguous)|HK1|ATP:protein-L-histidine N-phosphotransferase activity|protein kinase (histidine)|protein histidine kinase (ambiguous)|Sln1p|histidine protein kinase (ambiguous)|protein-histidine kinase activity|HP165|histidine kinase activity|histidine protein kinase activity|histidine kinase (ambiguous) EC:2.7.13.3|MetaCyc:2.7.13.3-RXN GO:0008896 molecular_function owl:Class GO:0030849 biolink:NamedThing autosome Any chromosome other than a sex chromosome. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Autosome Note that this term is mainly relevant in organisms that have both sex chromosomes and non-sex-determining chromosomes in an individual organism. cellular_component owl:Class GO:0005694 biolink:NamedThing chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. tmpzr1t_l9r_go_relaxed.owl prophase chromosome|chromatid|interphase chromosome Wikipedia:Chromosome Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore. cellular_component owl:Class GO:0032576 biolink:NamedThing O-linoleoyltransferase activity Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002561 biolink:NamedThing basophil degranulation The regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a basophil. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002276 biolink:NamedThing basophil activation involved in immune response A change in morphology and behavior of a basophil resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the basophil has specifically bound via IgE bound to Fc-epsilonRI receptors, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl basophil activation during immune response biological_process owl:Class GO:0070864 biolink:NamedThing sperm individualization complex A macromolecular complex that includes cytoskeletal components and part of the cell membrane. Forms at the nuclear end of a male germline syncytium, or cyst, and translocates the over the length of the syncytium in the course of sperm individualization. Each complex contains an array of 64 investment cones, one per nucleus, that move synchronously along the spermatogenic cyst. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-19T01:25:33Z cellular_component owl:Class GO:0090185 biolink:NamedThing negative regulation of kidney development Any process that decreases the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl negative regulation of nephrogenesis tb 2009-12-18T10:58:45Z biological_process owl:Class GO:0016303 biolink:NamedThing 1-phosphatidylinositol-3-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl PI3K|phosphatidylinositol 3-kinase activity, class III|ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase activity|PtdIns-3-kinase activity|phosphatidylinositol 3-kinase, class I, catalyst activity|type I phosphatidylinositol kinase activity|phosphatidylinositol 3-kinase activity, class II|PI3-kinase activity|Vps34p|type III phosphoinositide 3-kinase activity|1-phosphatidylinositol 3-kinase activity|phosphatidylinositol 3-kinase activity, class I RHEA:12709|Reactome:R-HSA-1675961|KEGG_REACTION:R03362|Reactome:R-HSA-109699|Reactome:R-HSA-5672012|Reactome:R-HSA-1675939|MetaCyc:1-PHOSPHATIDYLINOSITOL-3-KINASE-RXN|EC:2.7.1.137|Reactome:R-HSA-1676024|Reactome:R-HSA-6798174 GO:0004429 molecular_function owl:Class GO:0052742 biolink:NamedThing phosphatidylinositol kinase activity Catalysis of the reaction: ATP + a phosphatidylinositol = ADP + a phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-14T01:21:47Z molecular_function owl:Class GO:0071677 biolink:NamedThing positive regulation of mononuclear cell migration Any process that increases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl activation of mononuclear cell migration|upregulation of mononuclear cell migration|up-regulation of mononuclear cell migration|stimulation of mononuclear cell migration|up regulation of mononuclear cell migration mah 2010-02-16T02:15:29Z biological_process owl:Class GO:1990489 biolink:NamedThing anaerobic pectin catabolic process The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic pectin degradation tt 2014-09-20T18:09:53Z biological_process owl:Class GO:0045490 biolink:NamedThing pectin catabolic process The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. tmpzr1t_l9r_go_relaxed.owl pectin catabolism|pectin breakdown|pectin degradation biological_process owl:Class GO:1900652 biolink:NamedThing regulation of demethylkotanin biosynthetic process Any process that modulates the frequency, rate or extent of demethylkotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of demethylkotanin formation|regulation of demethylkotanin synthesis|regulation of demethylkotanin anabolism|regulation of demethylkotanin biosynthesis di 2012-05-22T04:07:18Z biological_process owl:Class GO:0031816 biolink:NamedThing P2Y6 nucleotide receptor binding Binding to a P2Y6 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y6 nucleotide receptor ligand molecular_function owl:Class GO:0050341 biolink:NamedThing thymine dioxygenase activity Catalysis of the reaction: thymine + 2-oxoglutarate + O2 = 5-hydroxymethyluracil + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl thymine,2-oxoglutarate dioxygenase activity|thymine,2-oxoglutarate:oxygen oxidoreductase (7-hydroxylating)|thymine 7-hydroxylase activity|5-hydroxymethyluracil oxygenase activity|5-hydroxy-methyluracil dioxygenase activity RHEA:10316|EC:1.14.11.6|MetaCyc:THYMINE-DIOXYGENASE-RXN molecular_function owl:Class GO:1903800 biolink:NamedThing positive regulation of production of miRNAs involved in gene silencing by miRNA Any process that activates or increases the frequency, rate or extent of production of miRNAs involved in gene silencing by miRNA. tmpzr1t_l9r_go_relaxed.owl activation of production of microRNAs involved in gene silencing by microRNA|upregulation of microRNA metabolism|up regulation of miRNA processing|up-regulation of microRNA-mediated gene silencing, production of microRNAs|activation of miRNA biogenesis|positive regulation of miRNA-mediated gene silencing, production of miRNAs|up regulation of production of miRNAs involved in gene silencing by miRNA|upregulation of production of microRNAs involved in gene silencing by microRNA|positive regulation of production of microRNAs involved in gene silencing by microRNA|positive regulation of microRNA metabolism|up regulation of microRNA-mediated gene silencing, production of microRNAs|up-regulation of microRNA metabolism|upregulation of miRNA biogenesis|up-regulation of miRNA-mediated gene silencing, production of miRNAs|up regulation of microRNA metabolic process|activation of microRNA metabolism|upregulation of miRNA-mediated gene silencing, production of miRNAs|up-regulation of microRNA biogenesis|activation of microRNA biogenesis|upregulation of microRNA biosynthetic process|upregulation of microRNA biogenesis|up regulation of miRNA-mediated gene silencing, production of miRNAs|activation of miRNA processing|up-regulation of miRNA biogenesis|upregulation of miRNA processing|up regulation of microRNA metabolism|activation of miRNA-mediated gene silencing, production of miRNAs|up regulation of gene silencing by miRNA, production of miRNAs|activation of microRNA metabolic process|up-regulation of microRNA biosynthesis|positive regulation of gene silencing by miRNA, production of miRNAs|up regulation of microRNA biosynthesis|up regulation of microRNA biosynthetic process|positive regulation of microRNA biosynthesis|positive regulation of microRNA biogenesis|up-regulation of production of microRNAs involved in gene silencing by microRNA|up-regulation of miRNA processing|activation of microRNA-mediated gene silencing, production of microRNAs|positive regulation of microRNA biosynthetic process|activation of gene silencing by miRNA, production of miRNAs|up-regulation of gene silencing by miRNA, production of miRNAs|positive regulation of miRNA processing|up regulation of microRNA biogenesis|up regulation of miRNA biogenesis|upregulation of microRNA metabolic process|upregulation of gene silencing by miRNA, production of miRNAs|up-regulation of microRNA metabolic process|positive regulation of miRNA biogenesis|upregulation of production of miRNAs involved in gene silencing by miRNA|activation of production of miRNAs involved in gene silencing by miRNA|up-regulation of microRNA biosynthetic process|activation of microRNA biosynthetic process|up regulation of production of microRNAs involved in gene silencing by microRNA|positive regulation of microRNA metabolic process|positive regulation of microRNA-mediated gene silencing, production of microRNAs|activation of microRNA biosynthesis|up-regulation of production of miRNAs involved in gene silencing by miRNA|upregulation of microRNA-mediated gene silencing, production of microRNAs|upregulation of microRNA biosynthesis rph 2015-01-15T13:58:31Z biological_process owl:Class GO:2000637 biolink:NamedThing positive regulation of gene silencing by miRNA Any process that activates or increases the frequency, rate or extent of gene silencing by miRNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of gene silencing by microRNA|positive regulation of microRNA-mediated gene silencing|positive regulation of miRNA-mediated gene silencing dph 2011-04-18T03:51:24Z biological_process owl:Class GO:0045780 biolink:NamedThing positive regulation of bone resorption Any process that activates or increases the frequency, rate or extent of bone resorption. tmpzr1t_l9r_go_relaxed.owl activation of bone resorption|stimulation of bone resorption|up-regulation of bone resorption|upregulation of bone resorption|up regulation of bone resorption biological_process owl:Class GO:0045124 biolink:NamedThing regulation of bone resorption Any process that modulates the frequency, rate or extent of bone tissue loss (resorption). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900787 biolink:NamedThing naphtho-gamma-pyrone biosynthetic process The chemical reactions and pathways resulting in the formation of naphtho-gamma-pyrone. tmpzr1t_l9r_go_relaxed.owl naphtho-gamma-pyrone anabolism|naphtho-gamma-pyrones biosynthetic process|naphtho-gamma-pyrones synthesis|naphtho-gamma-pyrone synthesis|naphtho-gamma-pyrones formation|naphtho-gamma-pyrone formation|naphtho-gamma-pyrone biosynthesis|naphtho-gamma-pyrones biosynthesis|naphtho-gamma-pyrones anabolism di 2012-06-04T09:36:02Z biological_process owl:Class GO:1900785 biolink:NamedThing naphtho-gamma-pyrone metabolic process The chemical reactions and pathways involving naphtho-gamma-pyrone. tmpzr1t_l9r_go_relaxed.owl naphtho-gamma-pyrone metabolism|naphtho-gamma-pyrones metabolic process|naphtho-gamma-pyrones metabolism di 2012-06-04T09:35:32Z biological_process owl:Class GO:1990520 biolink:NamedThing separase-securin complex A protein complex that includes separase (a protease which cleaves cohesin as part of chromosome separation) and securin, a protease inhibitor. Chromosome separation is inhibited until securin is degraded by the Anaphase Promoting Complex (APC). tmpzr1t_l9r_go_relaxed.owl Cut1-2 complex vw 2014-10-23T10:34:52Z cellular_component owl:Class GO:1905369 biolink:NamedThing endopeptidase complex A protein complex which is capable of endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay). bhm 2016-08-16T12:52:16Z cellular_component owl:Class GO:1990378 biolink:NamedThing upstream stimulatory factor complex A protein complex capable of sequence-specific DNA binding RNA polymerase II transcription factor activity through binding to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3'). Found in a variety of viral and cellular promoters. tmpzr1t_l9r_go_relaxed.owl USF1-USF2 heterodimer|USF2 homodimer|USF1 homodimer|USF complex An example of this is USF1 in human (UniProt symbol P22415) in PMID:8576131 (inferred from direct assay). bhm 2014-05-07T15:41:42Z cellular_component owl:Class GO:0035975 biolink:NamedThing carbamoyl phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of carbamoyl phosphate, an intermediate in the urea cycle and other nitrogen compound metabolic pathways. tmpzr1t_l9r_go_relaxed.owl carbamoyl phosphate degradation|carbamoyl phosphate breakdown|carbamoyl phosphate catabolism bf 2011-08-16T11:41:13Z biological_process owl:Class GO:0070408 biolink:NamedThing carbamoyl phosphate metabolic process The chemical reactions and pathways involving carbamoyl phosphate, an intermediate in the urea cycle and other nitrogen compound metabolic pathways. tmpzr1t_l9r_go_relaxed.owl carbamoyl phosphate metabolism UM-BBD_pathwayID:bzn biological_process owl:Class GO:0072299 biolink:NamedThing negative regulation of metanephric glomerulus development Any process that decreases the rate, frequency or extent of metanephric glomerulus development, the progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0072217 biolink:NamedThing negative regulation of metanephros development Any process that decreases the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T01:45:48Z biological_process owl:Class GO:0150062 biolink:NamedThing complement-mediated synapse pruning Synaptic pruning mediated by complement system signalling. tmpzr1t_l9r_go_relaxed.owl synapse elimination|synapse clearance|complement-dependent synapse pruning|synapse disassembly|synapse removal bc 2018-07-16T17:44:59Z biological_process owl:Class GO:0098883 biolink:NamedThing synapse pruning A cellular process that results in the controlled breakdown of synapse. After it starts the process is continuous until the synapse has disappeared. tmpzr1t_l9r_go_relaxed.owl synapse disassembly|synapse elimination|synapse removal|synapse clearance biological_process owl:Class GO:0043471 biolink:NamedThing regulation of cellular carbohydrate catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990878 biolink:NamedThing cellular response to gastrin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gastrin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-10-07T17:38:14Z biological_process owl:Class GO:1901729 biolink:NamedThing monensin A catabolic process The chemical reactions and pathways resulting in the breakdown of monensin A. tmpzr1t_l9r_go_relaxed.owl monensin A breakdown|monensin degradation|monensin A catabolism|monensin breakdown|monensin A degradation|monensin catabolism yaf 2013-01-09T11:55:49Z biological_process owl:Class GO:0000276 biolink:NamedThing mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048600 biolink:NamedThing oocyte fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000737 biolink:NamedThing negative regulation of stem cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:05:20Z biological_process owl:Class GO:0071826 biolink:NamedThing ribonucleoprotein complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a ribonucleoprotein complex. tmpzr1t_l9r_go_relaxed.owl ribonucleoprotein complex subunit organisation|RNA-protein complex subunit organization|protein-RNA complex subunit organization mah 2010-09-08T10:10:35Z biological_process owl:Class GO:0043933 biolink:NamedThing protein-containing complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein complex. tmpzr1t_l9r_go_relaxed.owl protein complex subunit organisation|protein complex subunit organization|cellular macromolecular complex subunit organisation|macromolecular complex organization|macromolecular complex subunit organisation|cellular macromolecular complex organization|cellular macromolecular complex subunit organization|macromolecular complex subunit organization mah 2010-09-08T10:01:42Z GO:0034600|GO:0034621|GO:0071822 biological_process owl:Class GO:0009898 biolink:NamedThing cytoplasmic side of plasma membrane The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl juxtamembrane|internal leaflet of plasma membrane|internal side of plasma membrane cellular_component owl:Class GO:0033623 biolink:NamedThing regulation of integrin activation Any process that modulates the frequency, rate, or extent of integrin activation. tmpzr1t_l9r_go_relaxed.owl regulation of integrin complex activation biological_process owl:Class GO:0140653 biolink:NamedThing fumitremorgin C biosynthetic process The chemical reactions and pathways resulting in the formation of fumitremorgin C. tmpzr1t_l9r_go_relaxed.owl fumitremorgin C synthesis|fumitremorgin C formation|fumitremorgin C biosynthesis|fumitremorgin C anabolism https://github.com/geneontology/go-ontology/issues/21494 pg 2021-05-27T08:37:11Z biological_process owl:Class GO:0019287 biolink:NamedThing isopentenyl diphosphate biosynthetic process, mevalonate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. tmpzr1t_l9r_go_relaxed.owl isopentenyl diphosphate formation, mevalonate pathway|Ac-MVA pathway|isopentenyl diphosphate synthesis, mevalonate pathway|isopentenyl diphosphate anabolism, mevalonate pathway|isopentenyl diphosphate biosynthetic process via mevalonate|acetate-mevalonate pathway biological_process owl:Class GO:0006084 biolink:NamedThing acetyl-CoA metabolic process The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA metabolism|acetyl coenzyme A metabolic process|acetyl coenzyme A metabolism biological_process owl:Class GO:0042918 biolink:NamedThing alkanesulfonate transport The directed movement of an alkanesulfonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alkanesulfonates are organic esters or salts of sulfonic acid containing an aliphatic hydrocarbon radical. tmpzr1t_l9r_go_relaxed.owl alkanesulphonate transport biological_process owl:Class GO:0046810 biolink:NamedThing host cell extracellular matrix binding Binding to the extracellular matrix of a host cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050840 biolink:NamedThing extracellular matrix binding Binding to a component of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl extracellular matrix constituent binding|adhesive extracellular matrix constituent molecular_function owl:Class GO:0090684 biolink:NamedThing contact chemoreceptor activity A non-GPCR transmembrane signaling receptor activity that is responsible for contact chemoreception. tmpzr1t_l9r_go_relaxed.owl contact chemosensation receptor activity tb 2016-05-20T15:53:01Z molecular_function owl:Class GO:0019612 biolink:NamedThing 4-toluenecarboxylate catabolic process The chemical reactions and pathways resulting in the breakdown of 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule. tmpzr1t_l9r_go_relaxed.owl 4-toluenecarboxylate breakdown|4-toluenecarboxylate degradation|p-toluate catabolic process|p-toluate catabolism|4-toluenecarboxylate catabolism MetaCyc:4TOLCARBDEG-PWY biological_process owl:Class GO:0052083 biolink:NamedThing suppression by symbiont of host cell-mediated immune response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by symbiont of host cell-mediated immune response|negative regulation by organism of host cell-based immune response|down-regulation by symbiont of host cell-mediated immune response|down regulation by symbiont of host cell-mediated immune response|negative regulation by organism of cell-mediated immune response of other organism involved in symbiotic interaction|downregulation by symbiont of host cell-mediated immune response GO:0052278 biological_process owl:Class GO:0120069 biolink:NamedThing positive regulation of stomach fundus smooth muscle contraction Any process that increases the frequency, rate or extent of any stomach fundus smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:27:25Z biological_process owl:Class GO:1904306 biolink:NamedThing positive regulation of gastro-intestinal system smooth muscle contraction Any process that activates or increases the frequency, rate or extent of gastro-intestinal system smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of gastro-intestinal system smooth muscle contraction|up regulation of gastro-intestinal system smooth muscle contraction|upregulation of gastro-intestinal system smooth muscle contraction|activation of gastro-intestinal system smooth muscle contraction sl 2015-06-09T23:18:54Z biological_process owl:Class GO:1990588 biolink:NamedThing FtsBL complex A protein complex required for prokaryotic cell division (FtsZ-dependent cytokinesis). Part of the divisome. Assembled independently of the other divisome components in the cytoplasm prior to transport to the cell septum. In E. coli consists of FtsB and FtsL. tmpzr1t_l9r_go_relaxed.owl FtsB-FtsL complex An example of this is FtsB in E. coli (P0A6S5) in PMID:15165235 (inferred from physical interaction). bhm 2014-12-15T09:33:00Z cellular_component owl:Class GO:0008641 biolink:NamedThing ubiquitin-like modifier activating enzyme activity Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl small protein activating enzyme activity https://github.com/geneontology/go-ontology/issues/14208 GO:0008642 molecular_function owl:Class GO:1904905 biolink:NamedThing negative regulation of endothelial cell-matrix adhesion via fibronectin Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell-matrix adhesion via fibronectin. tmpzr1t_l9r_go_relaxed.owl downregulation of endothelial cell-matrix adhesion via fibronectin|inhibition of endothelial cell-matrix adhesion via fibronectin|down regulation of endothelial cell-matrix adhesion via fibronectin|down-regulation of endothelial cell-matrix adhesion via fibronectin bc 2016-01-19T10:23:09Z biological_process owl:Class GO:0021847 biolink:NamedThing ventricular zone neuroblast division The proliferation of neuroblasts in the ventricular zone of the cerebral cortex. The neuronal progenitors of these cells will migrate radially. tmpzr1t_l9r_go_relaxed.owl neuroblast division in ventricular zone biological_process owl:Class GO:0021873 biolink:NamedThing forebrain neuroblast division The division of a neuroblast located in the forebrain. Neuroblast division gives rise to at least another neuroblast. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047727 biolink:NamedThing isobutyryl-CoA mutase activity Catalysis of the reaction: isobutyryl-CoA = butanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-methylpropanoyl-CoA CoA-carbonylmutase activity|isobutyryl coenzyme A mutase activity|butyryl-CoA:isobutyryl-CoA mutase activity RHEA:13141|KEGG_REACTION:R01181|EC:5.4.99.13|MetaCyc:ISOBUTYRYL-COA-MUTASE-RXN molecular_function owl:Class GO:0016866 biolink:NamedThing intramolecular transferase activity Catalysis of the transfer of a functional group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl mutase activity|intramolecular transferase activity, transferring other groups EC:5.4.-.- molecular_function owl:Class GO:0033494 biolink:NamedThing ferulate metabolic process The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl ferulate metabolism biological_process owl:Class GO:0035903 biolink:NamedThing cellular response to immobilization stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile. tmpzr1t_l9r_go_relaxed.owl cellular response to restraint stress|cellular response to immobilisation stress bf 2011-06-22T09:47:44Z biological_process owl:Class GO:0098531 biolink:NamedThing ligand-activated transcription factor activity A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors. tmpzr1t_l9r_go_relaxed.owl direct ligand regulated sequence-specific DNA binding transcription factor activity|transcription factor activity, direct ligand regulated sequence-specific DNA binding For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. dos 2013-10-17T15:51:30Z molecular_function owl:Class GO:0140590 biolink:NamedThing effector-mediated suppression of host defenses A process mediated by a molecule secreted by a symbiont that results in the supression of a defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl effector-mediated suppression of host defenses by symbiont https://github.com/geneontology/go-ontology/issues/20813 pg 2021-02-08T07:26:05Z biological_process owl:Class GO:0051155 biolink:NamedThing positive regulation of striated muscle cell differentiation Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of striated muscle cell differentiation|activation of striated muscle cell differentiation|up regulation of striated muscle cell differentiation|upregulation of striated muscle cell differentiation|stimulation of striated muscle cell differentiation biological_process owl:Class GO:0061058 biolink:NamedThing regulation of peptidoglycan recognition protein signaling pathway Any process that modulates the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of peptidoglycan recognition protein signalling pathway dph 2010-03-02T12:35:40Z biological_process owl:Class GO:0007077 biolink:NamedThing mitotic nuclear membrane disassembly The mitotic cell cycle process in which the controlled partial or complete breakdown of the nuclear membranes during occurs during mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic nuclear envelope breakdown|NEB|local NEB|mitotic nuclear envelope catabolism|mitotic nuclear envelope disassembly|mitotic nuclear envelope degradation|nuclear envelope breakdown biological_process owl:Class GO:0015889 biolink:NamedThing cobalamin transport The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl vitamin B12 transport biological_process owl:Class GO:1902204 biolink:NamedThing positive regulation of hepatocyte growth factor receptor signaling pathway Any process that activates or increases the frequency, rate or extent of hepatocyte growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of HGF receptor signaling pathway|activation of Met signaling pathway|positive regulation of HGF receptor signalling pathway|upregulation of HGF receptor signalling pathway|up regulation of HGF receptor signalling pathway|positive regulation of Met signaling pathway|upregulation of HGF receptor signaling pathway|up-regulation of Met signaling pathway|up-regulation of HGF receptor signaling pathway|positive regulation of HGF receptor signaling pathway|upregulation of hepatocyte growth factor receptor signaling pathway|up-regulation of HGF receptor signalling pathway|upregulation of Met signaling pathway|up-regulation of hepatocyte growth factor receptor signaling pathway|up regulation of Met signaling pathway|activation of hepatocyte growth factor receptor signaling pathway|up regulation of hepatocyte growth factor receptor signaling pathway|activation of HGF receptor signalling pathway|up regulation of HGF receptor signaling pathway lb 2013-06-10T13:20:56Z biological_process owl:Class GO:1903646 biolink:NamedThing positive regulation of chaperone-mediated protein folding Any process that activates or increases the frequency, rate or extent of chaperone-mediated protein folding. tmpzr1t_l9r_go_relaxed.owl upregulation of chaperone-mediated protein folding|up-regulation of chaperone-mediated protein folding|activation of chaperone-mediated protein folding|up regulation of chaperone-mediated protein folding pga 2014-11-21T15:25:44Z biological_process owl:Class GO:1903334 biolink:NamedThing positive regulation of protein folding Any process that activates or increases the frequency, rate or extent of protein folding. tmpzr1t_l9r_go_relaxed.owl up regulation of chaperone activity|up regulation of co-chaperone activity|positive regulation of protein complex assembly, multichaperone pathway|up-regulation of co-chaperonin activity|up regulation of protein folding|up-regulation of co-chaperone activity|upregulation of chaperonin-mediated tubulin folding|activation of protein complex assembly, multichaperone pathway|up-regulation of alpha-tubulin folding|upregulation of protein folding|upregulation of co-chaperonin activity|activation of co-chaperone activity|upregulation of chaperonin ATPase activity|upregulation of non-chaperonin molecular chaperone ATPase activity|upregulation of glycoprotein-specific chaperone activity|upregulation of chaperone activity|upregulation of alpha-tubulin folding|positive regulation of glycoprotein-specific chaperone activity|up regulation of non-chaperonin molecular chaperone ATPase activity|activation of chaperonin ATPase activity|up-regulation of non-chaperonin molecular chaperone ATPase activity|positive regulation of co-chaperone activity|up-regulation of protein folding|up-regulation of chaperone activity|positive regulation of chaperonin ATPase activity|up-regulation of beta-tubulin folding|activation of chaperone activity|upregulation of beta-tubulin folding|up regulation of alpha-tubulin folding|positive regulation of alpha-tubulin folding|activation of protein folding|activation of non-chaperonin molecular chaperone ATPase activity|positive regulation of co-chaperonin activity|activation of glycoprotein-specific chaperone activity|activation of chaperonin-mediated tubulin folding|activation of beta-tubulin folding|up regulation of chaperonin-mediated tubulin folding|positive regulation of beta-tubulin folding|up regulation of beta-tubulin folding|up regulation of glycoprotein-specific chaperone activity|activation of alpha-tubulin folding|positive regulation of chaperonin-mediated tubulin folding|positive regulation of non-chaperonin molecular chaperone ATPase activity|up-regulation of chaperonin ATPase activity|up-regulation of chaperonin-mediated tubulin folding|upregulation of co-chaperone activity|activation of co-chaperonin activity|upregulation of protein complex assembly, multichaperone pathway|up regulation of protein complex assembly, multichaperone pathway|up regulation of chaperonin ATPase activity|up regulation of co-chaperonin activity|up-regulation of glycoprotein-specific chaperone activity|positive regulation of chaperone activity|up-regulation of protein complex assembly, multichaperone pathway vw 2014-08-18T13:14:50Z biological_process owl:Class GO:2001058 biolink:NamedThing D-tagatose 6-phosphate metabolic process The chemical reactions and pathways involving a D-tagatose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-tagatose 6-phosphate metabolism jl 2011-09-09T03:21:28Z biological_process owl:Class GO:0033974 biolink:NamedThing nucleoside phosphoacylhydrolase activity Catalysis of the hydrolysis of mixed phospho-anhydride bonds. tmpzr1t_l9r_go_relaxed.owl nucleoside-5'-phosphoacylate acylhydrolase activity MetaCyc:3.6.1.24-RXN|EC:3.6.1.24 molecular_function owl:Class GO:0140517 biolink:NamedThing protein-RNA adaptor activity The binding activity of a protein that brings together another protein and an RNA, permitting those molecules to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19409 pg 2020-09-11T09:12:05Z molecular_function owl:Class GO:0030674 biolink:NamedThing protein-macromolecule adaptor activity The binding activity of a protein that brings together two or more macromolecules in contact, permitting those molecules to function in a coordinated way. The adaptor can bring together two proteins, or a protein and another macromolecule such as a lipid or a nucleic acid. tmpzr1t_l9r_go_relaxed.owl protein-protein adaptor|protein binding, bridging https://github.com/geneontology/go-ontology/issues/19409|https://github.com/geneontology/go-ontology/issues/18655 molecular_function owl:Class GO:0050611 biolink:NamedThing arsenate reductase (azurin) activity Catalysis of the reaction: H(2)O + arsenite + 2 oxidized azurin = 2 H(+) + 2 reduced azurin + arsenate. tmpzr1t_l9r_go_relaxed.owl arsenite:azurin oxidoreductase activity|arsenite oxidase activity EC:1.20.9.1|RHEA:18701|MetaCyc:1.20.98.1-RXN|UM-BBD_reactionID:r0634 GO:0018691 molecular_function owl:Class GO:0052882 biolink:NamedThing oxidoreductase activity, acting on phosphorus or arsenic in donors, with a copper protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a copper protein. tmpzr1t_l9r_go_relaxed.owl EC:1.20.9.- molecular_function owl:Class GO:0042015 biolink:NamedThing interleukin-20 binding Binding to interleukin-20. tmpzr1t_l9r_go_relaxed.owl IL-20 binding molecular_function owl:Class GO:0060251 biolink:NamedThing regulation of glial cell proliferation Any process that modulates the frequency, rate or extent of glial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048681 biolink:NamedThing negative regulation of axon regeneration Any process that stops, prevents, or reduces the frequency, rate or extent of axon regeneration. tmpzr1t_l9r_go_relaxed.owl down-regulation of axon regeneration|down regulation of axon regeneration|inhibition of axon regeneration|downregulation of axon regeneration biological_process owl:Class GO:0043311 biolink:NamedThing positive regulation of eosinophil degranulation Any process that activates or increases the frequency, rate or extent of eosinophil degranulation. tmpzr1t_l9r_go_relaxed.owl stimulation of eosinophil degranulation|up-regulation of eosinophil degranulation|positive regulation of eosinophil granule exocytosis|activation of eosinophil degranulation|upregulation of eosinophil degranulation|up regulation of eosinophil degranulation biological_process owl:Class GO:0002872 biolink:NamedThing negative regulation of natural killer cell tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl downregulation of natural killer cell tolerance induction|down-regulation of natural killer cell tolerance induction|down regulation of natural killer cell tolerance induction|inhibition of natural killer cell tolerance induction|negative regulation of NK cell tolerance induction biological_process owl:Class GO:0103117 biolink:NamedThing UDP-3-O-acyl-N-acetylglucosamine deacetylase activity Catalysis of the reaction: UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetylglucosamine(2-) + H2O <=> UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine(1-) + acetate. tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.108|MetaCyc:UDPACYLGLCNACDEACETYL-RXN|RHEA:25209 molecular_function owl:Class GO:1904300 biolink:NamedThing positive regulation of transcytosis Any process that activates or increases the frequency, rate or extent of transcytosis. tmpzr1t_l9r_go_relaxed.owl up regulation of transcytosis|activation of transcytosis|upregulation of transcytosis|up-regulation of transcytosis sl 2015-06-09T22:53:38Z biological_process owl:Class GO:2001170 biolink:NamedThing negative regulation of ATP biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ATP biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATP synthesis|negative regulation of ATP formation|negative regulation of ATP anabolism|negative regulation of ATP regeneration|negative regulation of ATP biosynthesis kmv 2011-10-26T03:18:13Z biological_process owl:Class GO:2001169 biolink:NamedThing regulation of ATP biosynthetic process Any process that modulates the frequency, rate or extent of ATP biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ATP regeneration|regulation of ATP biosynthesis|regulation of ATP anabolism|regulation of ATP synthesis|regulation of ATP formation kmv 2011-10-26T03:18:03Z biological_process owl:Class GO:1905451 biolink:NamedThing positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis Any process that activates or increases the frequency, rate or extent of Fc-gamma receptor signaling pathway involved in phagocytosis. tmpzr1t_l9r_go_relaxed.owl activation of Fc-gamma receptor signalling pathway involved in phagocytosis|up-regulation of Fc-gamma receptor signaling pathway involved in phagocytosis|positive regulation of Fcgamma receptor-mediated phagocytosis|up regulation of IgG-mediated phagocytosis|up regulation of Fcgamma receptor-mediated phagocytosis|activation of Fcgamma receptor-mediated phagocytosis|upregulation of Fc gamma receptor-dependent phagocytosis|activation of Fc gamma receptor-dependent phagocytosis|positive regulation of IgG-mediated phagocytosis|up regulation of Fc gamma receptor-dependent phagocytosis|up-regulation of IgG-mediated phagocytosis|up-regulation of Fcgamma receptor-mediated phagocytosis|upregulation of IgG-mediated phagocytosis|up-regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|upregulation of Fc-gamma receptor signalling pathway involved in phagocytosis|upregulation of Fcgamma receptor-mediated phagocytosis|activation of IgG-mediated phagocytosis|activation of Fc-gamma receptor signaling pathway involved in phagocytosis|up-regulation of Fc gamma receptor-dependent phagocytosis|positive regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|up regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|positive regulation of Fc gamma receptor-dependent phagocytosis|up regulation of Fc-gamma receptor signaling pathway involved in phagocytosis|upregulation of Fc-gamma receptor signaling pathway involved in phagocytosis sl 2016-09-15T19:42:06Z biological_process owl:Class GO:0003835 biolink:NamedThing beta-galactoside alpha-2,6-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-(1->4)-acetyl-beta-D-glucosamine = CMP + alpha-N-acetylneuraminyl-(2->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl beta-galactosamide alpha-2,6-sialyltransferase activity|CMP-N-acetylneuraminate:beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosamine alpha-2,6-N-acetylneuraminyltransferase activity|CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase activity Reactome:R-HSA-975902|MetaCyc:2.4.99.1-RXN|Reactome:R-HSA-977071|Reactome:R-HSA-4085033|RHEA:11836|Reactome:R-HSA-977228|EC:2.4.99.1 molecular_function owl:Class GO:0047633 biolink:NamedThing agmatine kinase activity Catalysis of the reaction: agmatine + ATP = N(4)-phosphoagmatine + ADP + 3 H(+). tmpzr1t_l9r_go_relaxed.owl phosphagen phosphokinase activity|ATP:agmatine 4-N-phosphotransferase activity|ATP:agmatine N4-phosphotransferase activity KEGG_REACTION:R01417|EC:2.7.3.10|MetaCyc:AGMATINE-KINASE-RXN|RHEA:15953 molecular_function owl:Class GO:0004618 biolink:NamedThing phosphoglycerate kinase activity Catalysis of the reaction: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl PGK|ATP:D-3-phosphoglycerate 1-phosphotransferase activity|3-phosphoglycerate kinase activity|phosphoglyceric acid kinase activity|ATP-3-phospho-D-glycerate-1-phosphotransferase activity|3-phosphoglyceric kinase activity|glycerate 3-phosphate kinase activity|phosphoglycerokinase activity|phosphoglyceric kinase activity|3-PGK|ATP:3-phospho-D-glycerate 1-phosphotransferase activity|3-phosphoglyceric acid phosphokinase activity|3-phosphoglycerate phosphokinase activity|3-phosphoglyceric acid kinase activity|glycerophosphate kinase activity Reactome:R-HSA-71850|MetaCyc:PHOSGLYPHOS-RXN|EC:2.7.2.3|KEGG_REACTION:R01512|RHEA:14801|Reactome:R-HSA-70486 molecular_function owl:Class GO:0002702 biolink:NamedThing positive regulation of production of molecular mediator of immune response Any process that activates or increases the frequency, rate, or extent of the production of molecular mediator of immune response. tmpzr1t_l9r_go_relaxed.owl upregulation of production of molecular mediator of immune response|up regulation of production of molecular mediator of immune response|up-regulation of production of molecular mediator of immune response|activation of production of molecular mediator of immune response|stimulation of production of molecular mediator of immune response biological_process owl:Class GO:0150017 biolink:NamedThing basal proximal dendrite Any dendrite in a dendritic tree that emerges near the basal pole of a neuron (e.g. in bipolar neurons, basal dendrites are either on the same side of the soma as the axon, or project toward the axon), and which is the closest to the cell body of the neuron (the soma). tmpzr1t_l9r_go_relaxed.owl bc 2017-12-21T12:17:00Z cellular_component owl:Class GO:0097585 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase Pmt5p-Pmt3p dimer complex A protein dimer complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity and, in S. cerevisiae, is composed of Pmt5p-Pmt3p. tmpzr1t_l9r_go_relaxed.owl Pmt5p-Pmt3p complex pr 2014-03-02T18:18:28Z cellular_component owl:Class GO:1905484 biolink:NamedThing negative regulation of motor neuron migration Any process that stops, prevents or reduces the frequency, rate or extent of motor neuron migration. tmpzr1t_l9r_go_relaxed.owl down-regulation of motor neuron migration|down regulation of motor neuron migration|inhibition of motor neuron migration|downregulation of motor neuron migration hbye 2016-09-23T12:50:11Z biological_process owl:Class GO:1905483 biolink:NamedThing regulation of motor neuron migration Any process that modulates the frequency, rate or extent of motor neuron migration. tmpzr1t_l9r_go_relaxed.owl hbye 2016-09-23T12:49:54Z biological_process owl:Class GO:1903124 biolink:NamedThing negative regulation of thioredoxin peroxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of thioredoxin peroxidase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of thioredoxin peroxidase activity|downregulation of thiol peroxidase activity|inhibition of TPx activity|down-regulation of thiol peroxidase activity|downregulation of TrxPx activity|down-regulation of thioredoxin peroxidase activity|downregulation of TPx activity|negative regulation of thiol peroxidase activity|inhibition of thiol peroxidase activity|down-regulation of TrxPx activity|inhibition of TrxPx activity|down regulation of thioredoxin peroxidase activity|down regulation of TPx activity|negative regulation of TrxPx activity|downregulation of thioredoxin peroxidase activity|down-regulation of TPx activity|down regulation of thiol peroxidase activity|down regulation of TrxPx activity|negative regulation of TPx activity bf 2014-06-18T11:03:26Z biological_process owl:Class GO:0086012 biolink:NamedThing membrane depolarization during cardiac muscle cell action potential The process in which cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:20:33Z biological_process owl:Class GO:0040001 biolink:NamedThing establishment of mitotic spindle localization The cell cycle process in which the directed movement of the mitotic spindle to a specific location in the cell occurs. tmpzr1t_l9r_go_relaxed.owl spindle positioning during mitosis|spindle positioning involved in mitotic cell cycle|mitotic spindle positioning or orientation|mitotic spindle positioning and orientation|establishment of mitotic spindle localisation|mitotic spindle positioning GO:0030608|GO:0030606|GO:0030610|GO:0030605|GO:0018986 biological_process owl:Class GO:1901307 biolink:NamedThing positive regulation of spermidine biosynthetic process Any process that activates or increases the frequency, rate or extent of spermidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of spermidine synthesis|activation of spermidine anabolism|activation of spermidine biosynthetic process|up regulation of spermidine anabolism|positive regulation of spermidine synthesis|up regulation of spermidine biosynthetic process|positive regulation of spermidine formation|upregulation of spermidine biosynthesis|up regulation of spermidine formation|positive regulation of spermidine biosynthesis|upregulation of spermidine biosynthetic process|up regulation of spermidine biosynthesis|activation of spermidine biosynthesis|upregulation of spermidine anabolism|up-regulation of spermidine synthesis|up-regulation of spermidine biosynthetic process|upregulation of spermidine formation|up-regulation of spermidine anabolism|up regulation of spermidine synthesis|up-regulation of spermidine biosynthesis|up-regulation of spermidine formation|activation of spermidine synthesis|positive regulation of spermidine anabolism|activation of spermidine formation pm 2012-08-21T14:02:58Z biological_process owl:Class GO:1990259 biolink:NamedThing histone-glutamine methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (histone)-glutamine = S-adenosyl-L-homocysteine + (histone)-N5-methyl-glutamine. tmpzr1t_l9r_go_relaxed.owl sp 2014-01-02T15:10:29Z molecular_function owl:Class GO:0036009 biolink:NamedThing protein-glutamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + protein L-glutamine = S-adenosyl-L-homocysteine + protein N-methyl-L-glutamine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6800138 bf 2011-10-03T02:27:05Z molecular_function owl:Class GO:0032589 biolink:NamedThing neuron projection membrane The portion of the plasma membrane surrounding a neuron projection. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031256 biolink:NamedThing leading edge membrane The portion of the plasma membrane surrounding the leading edge of a motile cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018148 biolink:NamedThing RNA-protein covalent cross-linking via peptidyl-tyrosine The formation of a covalent cross-link between RNA and a peptidyl-tyrosine residue by the formation of O4'-(phospho-5'-RNA)-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0249 biological_process owl:Class GO:0047241 biolink:NamedThing lipopolysaccharide N-acetylmannosaminouronosyltransferase activity Catalysis of the reaction: lipopolysaccharide + UDP-N-acetylmannosaminouronate = N-acetyl-beta-D-mannosaminouronosyl-1,4-lipopolysaccharide + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylmannosaminuronate-acetylglucosaminylpyrophosphorylundecaprenol acetylmannosaminuronosyltransferase activity|LPS N-acetylmannosaminouronosyltransferase activity|UDP-N-acetyl-beta-D-mannosaminouronate:lipopolysaccharide N-acetyl-beta-D-mannosaminouronosyltransferase activity|ManNAcA transferase activity MetaCyc:2.4.1.180-RXN|RHEA:28366|EC:2.4.1.180 molecular_function owl:Class GO:0051231 biolink:NamedThing spindle elongation The cell cycle process in which the distance is lengthened between poles of the spindle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000212 biolink:NamedThing negative regulation of glutamate metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of glutamate metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of glutamic acid metabolic process|negative regulation of glutamic acid metabolism|negative regulation of glutamate metabolism mah 2010-11-03T02:43:55Z biological_process owl:Class GO:0045763 biolink:NamedThing negative regulation of cellular amino acid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid. tmpzr1t_l9r_go_relaxed.owl down-regulation of amino acid metabolic process|negative regulation of amino acid metabolism|inhibition of amino acid metabolic process|down regulation of amino acid metabolic process|downregulation of amino acid metabolic process biological_process owl:Class GO:0016063 biolink:NamedThing rhodopsin biosynthetic process The chemical reactions and pathways resulting in the formation of rhodopsin, a brilliant purplish-red, light-sensitive visual pigment found in the rod cells of the retinas. tmpzr1t_l9r_go_relaxed.owl rhodopsin anabolism|rhodopsin formation|rhodopsin synthesis|rhodopsin biosynthesis biological_process owl:Class GO:0006726 biolink:NamedThing eye pigment biosynthetic process The chemical reactions and pathways resulting in the formation of eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye. tmpzr1t_l9r_go_relaxed.owl eye pigment synthesis|eye pigment anabolism|eye pigment formation|eye pigment biosynthesis biological_process owl:Class GO:0090500 biolink:NamedThing endocardial cushion to mesenchymal transition A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T11:51:44Z biological_process owl:Class GO:0061572 biolink:NamedThing actin filament bundle organization A process that results in the assembly, arrangement of constituent parts, or disassembly of an actin filament bundle. tmpzr1t_l9r_go_relaxed.owl actin filament cable organization dph 2013-08-02T11:24:11Z biological_process owl:Class GO:0031665 biolink:NamedThing negative regulation of lipopolysaccharide-mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl negative regulation of LPS-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signalling pathway|down-regulation of lipopolysaccharide-mediated signaling pathway|inhibition of lipopolysaccharide-mediated signaling pathway|downregulation of lipopolysaccharide-mediated signaling pathway|down regulation of lipopolysaccharide-mediated signaling pathway biological_process owl:Class GO:0018486 biolink:NamedThing 2-butanone oxidase activity Catalysis of the reaction: methyl ethyl ketone + O2 = H2O + ethyl acetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0169 molecular_function owl:Class GO:1900002 biolink:NamedThing positive regulation of anthocyanin catabolic process Any process that activates or increases the frequency, rate or extent of anthocyanin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of anthocyanin catabolism|positive regulation of anthocyanin degradation|up regulation of anthocyanin breakdown|up regulation of anthocyanin degradation|up regulation of anthocyanin catabolism|up regulation of anthocyanin catabolic process|positive regulation of anthocyanin breakdown tb 2011-12-20T07:12:15Z biological_process owl:Class GO:0032165 biolink:NamedThing prospore septin filament array Arrays of septin filaments, or bars, found in a series of filamentous structures; observed in the prospore membrane during spore formation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032160 biolink:NamedThing septin filament array Arrays of septin filaments, or bars, found in a series of filamentous structures. Such structures have been observed in the prospore membrane during spore formation in S. cerevisiae and in the chlamydospore membrane during chlamydospore formation in C. albicans. tmpzr1t_l9r_go_relaxed.owl septin bar cellular_component owl:Class GO:0030880 biolink:NamedThing RNA polymerase complex Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. tmpzr1t_l9r_go_relaxed.owl multisubunit RNA polymerase cellular_component owl:Class GO:0071312 biolink:NamedThing cellular response to alkaloid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:50:58Z biological_process owl:Class GO:2001135 biolink:NamedThing regulation of endocytic recycling Any process that modulates the frequency, rate or extent of endocytic recycling. tmpzr1t_l9r_go_relaxed.owl regulation of retrograde transport of endocytic vesicles kmv 2011-10-14T03:34:36Z biological_process owl:Class GO:0035028 biolink:NamedThing leading edge cell fate determination The process in which a cell becomes capable of differentiating autonomously into a leading edge cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048159 biolink:NamedThing primary oocyte stage The stage in oogenesis when the oocyte has a nucleus slightly larger than those of the adjacent cells and is surrounded by a layer of loose squamous epithelial cells. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 2 biological_process owl:Class GO:0032959 biolink:NamedThing inositol trisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl myo-inositol trisphosphate biosynthetic process|inositol trisphosphate formation|inositol trisphosphate synthesis|IP3 biosynthetic process|inositol trisphosphate biosynthesis|inositol trisphosphate anabolism|IP3 biosynthesis biological_process owl:Class GO:0046095 biolink:NamedThing deoxyinosine biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyinosine, hypoxanthine deoxyriboside. tmpzr1t_l9r_go_relaxed.owl deoxyinosine anabolism|deoxyinosine synthesis|deoxyinosine biosynthesis|deoxyinosine formation biological_process owl:Class GO:0046123 biolink:NamedThing purine deoxyribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any purine deoxyribonucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside biosynthesis|purine deoxyribonucleoside anabolism|purine deoxyribonucleoside synthesis|purine deoxyribonucleoside formation biological_process owl:Class GO:0106292 biolink:NamedThing superoxide-generating NADPH oxidase activity Catalysis of the reaction: NADPH + 2 O2 = H(+) + NADP(+) + 2 superoxide. tmpzr1t_l9r_go_relaxed.owl RHEA:63180 hjd 2020-08-19T15:58:36Z molecular_function owl:Class GO:0016175 biolink:NamedThing superoxide-generating NAD(P)H oxidase activity Catalysis of the reaction: NAD(P)H + O2 = NAD(P)H + O2-. tmpzr1t_l9r_go_relaxed.owl cytochrome B-245 Reactome:R-HSA-5668718|Reactome:R-HSA-1222376|Reactome:R-HSA-1236967|Reactome:R-HSA-1497810|EC:1.6.3.-|Reactome:R-HSA-6807557|Reactome:R-HSA-9673797|Reactome:R-HSA-6789092|Reactome:R-HSA-5218841|Reactome:R-HSA-5668629|Reactome:R-HSA-5668731 molecular_function owl:Class GO:1902938 biolink:NamedThing regulation of intracellular calcium activated chloride channel activity Any process that modulates the frequency, rate or extent of intracellular calcium activated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl als 2014-04-28T08:49:08Z biological_process owl:Class GO:0045814 biolink:NamedThing negative regulation of gene expression, epigenetic An epigenetic process that stops, prevents or reduces the rate of gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. tmpzr1t_l9r_go_relaxed.owl down-regulation of gene expression, epigenetic|gene silencing|down regulation of gene expression, epigenetic|inhibition of gene expression, epigenetic|downregulation of gene expression, epigenetic https://github.com/geneontology/go-ontology/issues/22201 biological_process owl:Class GO:0090037 biolink:NamedThing positive regulation of protein kinase C signaling Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein kinase C signalling cascade|positive regulation of protein kinase C signaling cascade tb 2009-08-03T11:28:44Z biological_process owl:Class GO:0090036 biolink:NamedThing regulation of protein kinase C signaling Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl regulation of protein kinase C signalling cascade|regulation of protein kinase C signaling cascade tb 2009-08-03T11:27:26Z biological_process owl:Class GO:0009079 biolink:NamedThing pyruvate family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of any amino acid that requires pyruvate for its synthesis, e.g. alanine. tmpzr1t_l9r_go_relaxed.owl pyruvate family amino acid biosynthesis|pyruvate family amino acid synthesis|pyruvate family amino acid formation|pyruvate family amino acid anabolism biological_process owl:Class GO:0051144 biolink:NamedThing propanediol catabolic process The chemical reactions and pathways resulting in the breakdown of propanediol, a sweet, colorless, viscous, hygroscopic liquid with the formula CH3-CHOH-CH2OH. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydroxypropane catabolism|1,2-dihydroxypropane catabolic process|propylene glycol catabolic process|propylene glycol catabolism|propanediol catabolism|propanediol breakdown|propanediol degradation biological_process owl:Class GO:1901857 biolink:NamedThing positive regulation of cellular respiration Any process that activates or increases the frequency, rate or extent of cellular respiration. tmpzr1t_l9r_go_relaxed.owl positive regulation of respiration|upregulation of cellular respiration|activation of oxidative metabolism|up-regulation of oxidative metabolic process|activation of respiration|up regulation of cellular respiration|up regulation of respiration|positive regulation of oxidative metabolism|activation of cellular respiration|upregulation of oxidative metabolic process|up regulation of oxidative metabolic process|up regulation of oxidative metabolism|up-regulation of oxidative metabolism|upregulation of oxidative metabolism|positive regulation of oxidative metabolic process|activation of oxidative metabolic process|upregulation of respiration|up-regulation of respiration|up-regulation of cellular respiration yaf 2013-02-01T09:56:28Z biological_process owl:Class GO:0045610 biolink:NamedThing regulation of hemocyte differentiation Any process that modulates the frequency, rate or extent of hemocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of arthropod blood cell differentiation biological_process owl:Class GO:0045503 biolink:NamedThing dynein light chain binding Binding to a light chain of the dynein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006083 biolink:NamedThing acetate metabolic process The chemical reactions and pathways involving acetate, the anion of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate metabolism biological_process owl:Class GO:0080127 biolink:NamedThing fruit septum development The process whose specific outcome is the progression of the fruit septum over time, from its formation to the mature structure. The fruit septum is a thin partition or membrane that divides a cavity or a mass of tissue in the fruit. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-28T04:37:19Z biological_process owl:Class GO:0035509 biolink:NamedThing negative regulation of myosin-light-chain-phosphatase activity Any process that stops, prevents, or reduces the frequency, rate or extent of myosin-light-chain-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:56:34Z biological_process owl:Class GO:0005786 biolink:NamedThing signal recognition particle, endoplasmic reticulum targeting A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl signal sequence receptor complex|SRP Wikipedia:Signal_recognition_particle GO:0005855 cellular_component owl:Class GO:0048500 biolink:NamedThing signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Signal_recognition_particle cellular_component owl:Class GO:0042077 biolink:NamedThing protein phosphate-linked glycosylation via serine The glycosylation of peptidyl-serine through a phosphoester bond forming, for example, GlcNAc-alpha-1-P-Ser residues. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphate-linked glycosylation via serine biological_process owl:Class GO:0005135 biolink:NamedThing interleukin-3 receptor binding Binding to an interleukin-3 receptor. tmpzr1t_l9r_go_relaxed.owl IL-3|interleukin-3 receptor ligand molecular_function owl:Class GO:0097279 biolink:NamedThing histamine secretion mediated by IgE immunoglobulin Histamine release triggered by the binding of an antigen to an IgE immunoglobulin bound to the cell surface. An example is mast cell histamine degranulation as a result of exposure of mast cell-bound IgE to alder tree pollen. tmpzr1t_l9r_go_relaxed.owl histamine secretion mediated by IgE antibody|Ig-mediated histamine release pr 2012-03-22T06:42:13Z biological_process owl:Class GO:0097280 biolink:NamedThing histamine secretion mediated by immunoglobulin Histamine release triggered by the binding of an antigen to an immunoglobulin bound to the cell surface. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-26T01:30:25Z biological_process owl:Class GO:2000572 biolink:NamedThing positive regulation of interleukin-4-dependent isotype switching to IgE isotypes Any process that activates or increases the frequency, rate or extent of interleukin-4-dependent isotype switching to IgE isotypes. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-4-dependent isotype switching to IgE isotypes ebc 2011-04-03T09:20:18Z biological_process owl:Class GO:0002092 biolink:NamedThing positive regulation of receptor internalization Any process that activates or increases the frequency, rate or extent of receptor internalization. tmpzr1t_l9r_go_relaxed.owl up-regulation of receptor internalization|stimulation of receptor internalization|activation of receptor internalization|upregulation of receptor internalization|up regulation of receptor internalization biological_process owl:Class GO:0018091 biolink:NamedThing peptidyl-asparagine racemization The racemization of peptidyl-asparagine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0196 GO:0019127|GO:0018373 biological_process owl:Class GO:0051985 biolink:NamedThing negative regulation of chromosome segregation Any process that stops, prevents, or reduces the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets. tmpzr1t_l9r_go_relaxed.owl down-regulation of chromosome segregation|downregulation of chromosome segregation|down regulation of chromosome segregation|inhibition of chromosome segregation biological_process owl:Class GO:1901158 biolink:NamedThing neomycin biosynthetic process The chemical reactions and pathways resulting in the formation of neomycin. tmpzr1t_l9r_go_relaxed.owl neomycin anabolism|neomycin synthesis|neomycin formation|neomycin biosynthesis yaf 2012-07-17T04:28:28Z biological_process owl:Class GO:0030502 biolink:NamedThing negative regulation of bone mineralization Any process that stops, prevents, or reduces the frequency, rate or extent of bone mineralization. tmpzr1t_l9r_go_relaxed.owl inhibition of bone mineralization|down regulation of bone mineralization|downregulation of bone mineralization|down-regulation of bone mineralization biological_process owl:Class GO:0030500 biolink:NamedThing regulation of bone mineralization Any process that modulates the frequency, rate or extent of bone mineralization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000113 biolink:NamedThing negative regulation of cellular macromolecule biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of cellular macromolecule biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular macromolecule synthesis|negative regulation of cellular biopolymer biosynthetic process|negative regulation of cellular macromolecule anabolism|negative regulation of cellular macromolecule biosynthesis|negative regulation of cellular macromolecule formation tb 2010-09-15T08:55:48Z biological_process owl:Class GO:0036028 biolink:NamedThing protein C inhibitor-thrombin complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and thrombin (F2); formation of the complex inhibits the serine protease activity of thrombin. tmpzr1t_l9r_go_relaxed.owl SERPINA5-thrombin complex|PCI-thrombin complex|plasma serine protease inhibitor-thrombin complex|protein C inhibitor-F2 complex|serpin A5-thrombin complex|protein C inhibitor-coagulation factor II complex bf 2011-10-19T01:40:18Z cellular_component owl:Class GO:0018602 biolink:NamedThing 2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity Catalysis of the reaction: 2,4-dichlorophenoxyacetate + 2-oxoglutarate + oxygen = 2,4-dichlorophenol + glyoxylate + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0274|RHEA:48984|MetaCyc:RXN-9863 molecular_function owl:Class GO:0045623 biolink:NamedThing negative regulation of T-helper cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of T-helper cell differentiation|down regulation of T-helper cell differentiation|downregulation of T-helper cell differentiation|down-regulation of T-helper cell differentiation|negative regulation of T-helper cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0034439 biolink:NamedThing lipoprotein lipid oxidation The modification of a lipoprotein by oxidation of the lipid group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010795 biolink:NamedThing regulation of ubiquinone biosynthetic process Any process that modulates the frequency, rate or extent of ubiquinone biosynthesis. Ubiquinone biosynthesis consists of the chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901801 biolink:NamedThing 1,5-anhydro-D-fructose metabolic process The chemical reactions and pathways involving 1,5-anhydro-D-fructose. tmpzr1t_l9r_go_relaxed.owl 1,5-anhydro-D-fructose metabolism yaf 2013-01-22T09:56:20Z biological_process owl:Class GO:0015956 biolink:NamedThing bis(5'-nucleosidyl) oligophosphate metabolic process The chemical reactions and pathways involving a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules. tmpzr1t_l9r_go_relaxed.owl bis(5'-nucleosidyl) oligophosphate metabolism biological_process owl:Class GO:0048765 biolink:NamedThing root hair cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010053 biolink:NamedThing root epidermal cell differentiation The process in which a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060298 biolink:NamedThing positive regulation of sarcomere organization Any process that increases the rate, frequency or extent of myofibril assembly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs. tmpzr1t_l9r_go_relaxed.owl positive regulation of sarcomere organisation biological_process owl:Class GO:0004123 biolink:NamedThing cystathionine gamma-lyase activity Catalysis of the reaction: L-cystathionine + H2O = 2-oxobutanoate + L-cysteine + NH4+. tmpzr1t_l9r_go_relaxed.owl homoserine dehydratase activity|gamma-cystathionase activity|homoserine deaminase activity|L-cystathionine cysteine-lyase (deaminating)|homoserine deaminase-cystathionase activity|L-cystathionine cysteine-lyase (deaminating; 2-oxobutanoate-forming) KEGG_REACTION:R01001|MetaCyc:CYSTAGLY-RXN|EC:4.4.1.1|Reactome:R-HSA-1614583|RHEA:14005 GO:0016225 molecular_function owl:Class GO:0061833 biolink:NamedThing protein localization to tricellular tight junction A process in which a protein is transported to, or maintained in, a location within a tricellular tight junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150105 biolink:NamedThing protein localization to cell-cell junction A process in which a protein is transported to, or maintained, in a location within a cell-cell junction. tmpzr1t_l9r_go_relaxed.owl bc 2019-06-11T11:00:18Z biological_process owl:Class GO:0039620 biolink:NamedThing T=7 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:804 Spherical viruses with T numbers greater than or equal to 7 are skewed. They are therefore described as either right-handed (dextro) or left-handed (laevo). bf 2012-07-18T02:16:40Z cellular_component owl:Class GO:0099031 biolink:NamedThing anchored component of postsynaptic density membrane The component of the postsynaptic density membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099030 biolink:NamedThing anchored component of postsynaptic specialization membrane The component of the postsynaptic specialization membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050796 biolink:NamedThing regulation of insulin secretion Any process that modulates the frequency, rate or extent of the regulated release of insulin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140439 biolink:NamedThing protein-cysteine S-stearoyltransferase activity Catalysis of the transfer of a stearoyl (systematic name, octadecanoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: octadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-octadecanoyl-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18882 RHEA:59740 pg 2020-03-11T09:55:48Z molecular_function owl:Class GO:0019707 biolink:NamedThing protein-cysteine S-acyltransferase activity Catalysis of the transfer of an acyl group to a sulfur atom on the cysteine of a protein molecule. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18882 RHEA:63372 molecular_function owl:Class GO:0034410 biolink:NamedThing cell wall beta-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall beta-glucan biosynthesis|cell wall beta-glucan anabolism|cell wall beta-glucan synthesis|cell wall beta-glucan formation biological_process owl:Class GO:0002330 biolink:NamedThing pre-B cell receptor expression The process leading up to expression of the pre-B cell receptor on the surface of pre-B cells, starting with the recombination of an immunuglobulin heavy chain locus, including expression of the surrogate light chain, the association of the surrogate light chain with the heavy chain, and expression of the complete pre-B cell receptor on the cell surface. pre-B cell receptor expression is a key checkpoint in the transition of pro-B cell to pre-B cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021617 biolink:NamedThing glossopharyngeal nerve structural organization The process that contributes to the act of creating the structural organization of the glossopharyngeal nerve. This process pertains to the physical shaping of a rudimentary structure. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion. tmpzr1t_l9r_go_relaxed.owl CN IX structural organization|glossopharyngeal nerve structural organisation biological_process owl:Class GO:0021604 biolink:NamedThing cranial nerve structural organization The process that contributes to the act of creating the structural organization of the cranial nerves. This process pertains to the physical shaping of a rudimentary structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions. tmpzr1t_l9r_go_relaxed.owl cranial nerve structural organisation biological_process owl:Class GO:0062002 biolink:NamedThing regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity Any process that modulates the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-26T13:16:39Z biological_process owl:Class GO:0050799 biolink:NamedThing cocaine biosynthetic process The chemical reactions and pathways resulting in the formation of cocaine, an alkaloid obtained from the dried leaves of the shrub Erythroxylon coca. It is a cerebral stimulant and narcotic. tmpzr1t_l9r_go_relaxed.owl cocaine anabolism|cocaine formation|cocaine synthesis|cocaine biosynthesis biological_process owl:Class GO:1903979 biolink:NamedThing negative regulation of microglial cell activation Any process that stops, prevents or reduces the frequency, rate or extent of microglial cell activation. tmpzr1t_l9r_go_relaxed.owl inhibition of microglial cell activation|down regulation of microglial cell activation|downregulation of microglial cell activation|down-regulation of microglial cell activation nc 2015-03-02T15:17:39Z biological_process owl:Class GO:1900508 biolink:NamedThing positive regulation of iron-sulfur-molybdenum cofactor assembly Any process that activates or increases the frequency, rate or extent of iron-sulfur-molybdenum cofactor assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of iron molybdenum cofactor biosynthesis|positive regulation of iron molybdenum cofactor biosynthetic process|activation of iron-sulfur-molybdenum cofactor assembly|positive regulation of iron molybdenum cofactor assembly|activation of FeMoco assembly|up-regulation of iron molybdenum cofactor biosynthetic process|up regulation of iron molybdenum cofactor assembly|positive regulation of FeMoco assembly|up-regulation of FeMoco biosynthetic process|activation of iron molybdenum cofactor biosynthetic process|up-regulation of iron molybdenum cofactor biosynthesis|upregulation of FeMoco biosynthetic process|positive regulation of iron molybdenum cofactor biosynthesis|upregulation of iron molybdenum cofactor assembly|up-regulation of iron-sulfur-molybdenum cofactor assembly|up-regulation of iron molybdenum cofactor assembly|up regulation of FeMoco biosynthetic process|activation of FeMoco biosynthetic process|up regulation of iron molybdenum cofactor biosynthetic process|upregulation of iron molybdenum cofactor biosynthesis|upregulation of iron molybdenum cofactor biosynthetic process|activation of iron molybdenum cofactor assembly|activation of iron molybdenum cofactor biosynthesis|upregulation of FeMoco assembly|up-regulation of FeMoco assembly|up regulation of iron-sulfur-molybdenum cofactor assembly|up regulation of FeMoco assembly|positive regulation of FeMoco biosynthetic process|upregulation of iron-sulfur-molybdenum cofactor assembly tt 2012-05-02T04:02:37Z biological_process owl:Class GO:0035715 biolink:NamedThing chemokine (C-C motif) ligand 2 binding Binding to chemokine (C-C motif) ligand 2. tmpzr1t_l9r_go_relaxed.owl CCL2 binding bf 2011-03-03T04:24:24Z molecular_function owl:Class GO:0019957 biolink:NamedThing C-C chemokine binding Binding to a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048511 biolink:NamedThing rhythmic process Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. tmpzr1t_l9r_go_relaxed.owl rhythm biological_process owl:Class GO:0080122 biolink:NamedThing AMP transmembrane transporter activity Enables the transfer of AMP, adenosine monophosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl adenosine monophosphate transmembrane transporter activity dhl 2009-04-28T04:05:39Z molecular_function owl:Class GO:0010882 biolink:NamedThing regulation of cardiac muscle contraction by calcium ion signaling Any process that modulates the frequency, rate or extent of cardiac muscle contraction by changing the calcium ion signals that trigger contraction. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac muscle contraction by calcium ion signalling biological_process owl:Class GO:0032646 biolink:NamedThing regulation of hepatocyte growth factor production Any process that modulates the frequency, rate, or extent of hepatocyte growth factor production. tmpzr1t_l9r_go_relaxed.owl regulation of scatter factor production|regulation of hepatocyte growth factor biosynthetic process|regulation of HGF production GO:0048176 biological_process owl:Class GO:0070724 biolink:NamedThing BMP receptor complex A protein complex that acts as a receptor for bone morphogenetic proteins (BMPs); a homo- or heterodimer of type I and/or type II BMP receptor subunits. tmpzr1t_l9r_go_relaxed.owl bone morphogenetic protein receptor complex mah 2009-06-15T02:34:27Z cellular_component owl:Class GO:0098802 biolink:NamedThing plasma membrane signaling receptor complex Any protein complex that is part of the plasma membrane and which functions as a signaling receptor. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:0052609 biolink:NamedThing 4-ketotorulene 3-hydroxylase activity Catalysis of the reaction: 4-ketotorulene + a reduced electron acceptor + oxygen = 3-hydroxy-4-ketotorulene + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl carotene beta-ring hydroxylase activity|beta-ring carotenoid 3-hydroxylase activity|beta-carotene hydroxylase activity MetaCyc:RXN-8218 molecular_function owl:Class GO:0009047 biolink:NamedThing dosage compensation by hyperactivation of X chromosome Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global hyperactivation of all, or most of, the genes on the X-chromosome in the heterogametic sex, leading to a two-fold increase in gene expression from this chromosome. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001213 biolink:NamedThing negative regulation of vasculogenesis Any process that stops, prevents or reduces the frequency, rate or extent of vasculogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular morphogenesis yaf 2011-11-15T01:22:36Z biological_process owl:Class GO:0003398 biolink:NamedThing glial cell differentiation involved in amphid sensory organ development The process in which a relatively unspecialized cell acquires the specialized features of a glial cell of the amphid sensory organ. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:55:27Z biological_process owl:Class GO:0010001 biolink:NamedThing glial cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a glial cell. tmpzr1t_l9r_go_relaxed.owl neuroglia differentiation|glia cell differentiation GO:0007404|GO:0043360 biological_process owl:Class GO:0015940 biolink:NamedThing pantothenate biosynthetic process The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. tmpzr1t_l9r_go_relaxed.owl pantothenate anabolism|pantothenate anabolism from valine|pantothenate formation from 2-oxypantoyl lactone|pantothenate synthesis|pantothenate synthesis from valine|pantothenate synthesis from 2-oxypantoyl lactone|pantothenate biosynthetic process from valine|pantothenate anabolism from 2-oxypantoyl lactone|vitamin B5 biosynthesis|pantothenate formation|pantothenate biosynthetic process from 2-dehydropantolactone|pantothenate biosynthetic process from 2-oxypantoyl lactone|pantothenate formation from valine|pantothenate biosynthesis from 2-oxypantoyl lactone|vitamin B5 biosynthetic process|pantothenate biosynthesis|pantothenate biosynthesis from valine MetaCyc:PANTO-PWY|MetaCyc:PANTOSYN-PWY|MetaCyc:PWY-3961|MetaCyc:PWY-4221 GO:0033317|GO:0033318 biological_process owl:Class GO:0015939 biolink:NamedThing pantothenate metabolic process The chemical reactions and pathways involving pantothenate, the anion of pantothenic acid, the amide of beta-alanine and pantoic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. tmpzr1t_l9r_go_relaxed.owl vitamin B5 metabolism|pantothenate metabolism|vitamin B5 metabolic process GO:0006770 biological_process owl:Class GO:0050539 biolink:NamedThing maleimide hydrolase activity Catalysis of the reaction: H(2)O + maleimide = H(+) + maleamate. tmpzr1t_l9r_go_relaxed.owl imidase activity|cyclic-imide amidohydrolase (decyclicizing)|cyclic imide hydrolase activity|cyclic-imide amidohydrolase (decyclizing) MetaCyc:3.5.2.16-RXN|EC:3.5.2.16|KEGG_REACTION:R05781|RHEA:24476 molecular_function owl:Class GO:0080110 biolink:NamedThing sporopollenin biosynthetic process The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer. tmpzr1t_l9r_go_relaxed.owl sporopollenin biosynthesis dhl 2009-04-23T04:44:16Z biological_process owl:Class GO:0034220 biolink:NamedThing ion transmembrane transport A process in which an ion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl ion membrane transport|transmembrane ion transport|ATP hydrolysis coupled ion transmembrane transport Note that this term is not intended for use in annotating lateral movement within membranes. GO:0099131 biological_process owl:Class GO:1901159 biolink:NamedThing xylulose 5-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl xylulose 5-phosphate formation|xylulose 5-phosphate synthesis|xylulose 5-phosphate anabolism|xylulose 5-phosphate biosynthesis bf 2012-07-18T04:42:24Z biological_process owl:Class GO:0035821 biolink:NamedThing modulation of process of other organism The process in which an organism effects a change in the structure or processes of another organism. tmpzr1t_l9r_go_relaxed.owl regulation of morphology of other organism|regulation of physiological process of other organism|modification of morphology or physiology of other organism|regulation of physiology of other organism|regulation of morphology or physiology of other organism https://github.com/geneontology/go-ontology/issues/18605 bf 2011-04-21T01:31:51Z biological_process owl:Class GO:0003013 biolink:NamedThing circulatory system process A organ system process carried out by any of the organs or tissues of the circulatory system. The circulatory system is an organ system that moves extracellular fluids to and from tissue within a multicellular organism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Circulatory_system biological_process owl:Class GO:0003008 biolink:NamedThing system process A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective. tmpzr1t_l9r_go_relaxed.owl organ system process biological_process owl:Class GO:1904224 biolink:NamedThing negative regulation of glucuronosyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of glucuronosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of UDP-glucuronosyltransferase activity|negative regulation of p-nitrophenylglucuronosyltransferase activity|inhibition of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|down regulation of 1-naphthol-UDP-glucuronosyltransferase activity|inhibition of UDP glucuronic acid transferase activity|down regulation of bilirubin UDPGT activity|down-regulation of UDPGT activity|downregulation of UDPGT activity|negative regulation of bilirubin UDP-glucuronosyltransferase activity|negative regulation of bilirubin UDPGT activity|down-regulation of uridine diphosphoglucuronosyltransferase activity|inhibition of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|inhibition of UDP glucuronosyltransferase activity|inhibition of UDP glucuronate-estriol glucuronosyltransferase activity|inhibition of p-hydroxybiphenyl UDP glucuronyltransferase activity|down-regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|downregulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|down-regulation of glucuronosyltransferase activity|down regulation of bilirubin monoglucuronide glucuronyltransferase activity|negative regulation of p-nitrophenol UDP-glucuronosyltransferase activity|downregulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|inhibition of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|down regulation of UDPGA-glucuronyltransferase activity|down-regulation of bilirubin glucuronyltransferase activity|downregulation of p-nitrophenylglucuronosyltransferase activity|inhibition of 4-nitrophenol UDP-glucuronyltransferase activity|inhibition of estrone UDPglucuronosyltransferase activity|inhibition of UDP glucuronyltransferase activity|inhibition of uridine 5'-diphosphoglucuronyltransferase activity|negative regulation of bilirubin uridine diphosphoglucuronyltransferase activity|negative regulation of UDP glucuronate-estriol glucuronosyltransferase activity|negative regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|down-regulation of bilirubin UDPGT activity|negative regulation of p-nitrophenol UDP-glucuronyltransferase activity|negative regulation of uridine diphosphoglucuronyltransferase activity|down-regulation of UDP-glucuronosyltransferase activity|down-regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|down-regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of estriol UDPglucuronosyltransferase activity|downregulation of UDP glucuronosyltransferase activity|negative regulation of bilirubin glucuronyltransferase activity|down-regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|inhibition of morphine glucuronyltransferase activity|down regulation of UDP glucuronosyltransferase activity|negative regulation of UDP glucuronyltransferase activity|inhibition of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|inhibition of bilirubin glucuronyltransferase activity|inhibition of PNP-UDPGT|downregulation of UDP-glucuronyltransferase activity|negative regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|down-regulation of p-phenylphenol glucuronyltransferase activity|downregulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|inhibition of 1-naphthol glucuronyltransferase activity|downregulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|down-regulation of p-nitrophenol UDP-glucuronosyltransferase activity|negative regulation of p-phenylphenol glucuronyltransferase activity|downregulation of bilirubin UDPGT activity|negative regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|down regulation of p-nitrophenol UDP-glucuronosyltransferase activity|down regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|inhibition of uridine diphosphoglucuronyltransferase activity|downregulation of UDPGA transferase activity|down regulation of phenyl-UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronyltransferase activity|down-regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|negative regulation of UDPGA-glucuronyltransferase activity|inhibition of phenyl-UDP-glucuronosyltransferase activity|negative regulation of bilirubin monoglucuronide glucuronyltransferase activity|down-regulation of 4-nitrophenol UDP-glucuronyltransferase activity|downregulation of morphine glucuronyltransferase activity|down-regulation of UDP glucuronosyltransferase activity|inhibition of bilirubin monoglucuronide glucuronyltransferase activity|down regulation of UDP-glucuronosyltransferase activity|negative regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|negative regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|down-regulation of phenyl-UDP-glucuronosyltransferase activity|negative regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|down regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|negative regulation of ciramadol UDP-glucuronyltransferase activity|inhibition of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|down regulation of UDPGA transferase activity|inhibition of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|inhibition of 17-OH steroid UDPGT activity|down regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|inhibition of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|inhibition of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|down-regulation of bilirubin uridine diphosphoglucuronyltransferase activity|down regulation of bilirubin UDP-glucuronosyltransferase activity|inhibition of bilirubin uridine diphosphoglucuronyltransferase activity|negative regulation of PNP-UDPGT|inhibition of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|downregulation of 1-naphthol glucuronyltransferase activity|down regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|down regulation of estrone UDPglucuronosyltransferase activity|down-regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|down regulation of estriol UDPglucuronosyltransferase activity|downregulation of 4-nitrophenol UDP-glucuronyltransferase activity|downregulation of 1-naphthol-UDP-glucuronosyltransferase activity|down regulation of p-nitrophenylglucuronosyltransferase activity|downregulation of bilirubin monoglucuronide glucuronyltransferase activity|downregulation of phenyl-UDP-glucuronosyltransferase activity|inhibition of estriol UDPglucuronosyltransferase activity|down regulation of bilirubin uridine diphosphoglucuronyltransferase activity|down regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|negative regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|inhibition of UDP-glucuronyltransferase activity|downregulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|inhibition of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|inhibition of 4-methylumbelliferone UDP-glucuronosyltransferase activity|down regulation of 17-OH steroid UDPGT activity|downregulation of glucuronosyltransferase activity|negative regulation of phenyl-UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronosyltransferase activity|negative regulation of 4-nitrophenol UDPGT activity|inhibition of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|downregulation of p-phenylphenol glucuronyltransferase activity|down regulation of pnp-UDPGT activity|down regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|down-regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|down-regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|negative regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|downregulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|down-regulation of 1-naphthol-UDP-glucuronosyltransferase activity|down-regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|inhibition of p-nitrophenol UDP-glucuronosyltransferase activity|inhibition of p-nitrophenol UDP-glucuronyltransferase activity|inhibition of p-nitrophenylglucuronosyltransferase activity|negative regulation of UDP-glucuronyltransferase activity|downregulation of ciramadol UDP-glucuronyltransferase activity|negative regulation of 1-naphthol-UDP-glucuronosyltransferase activity|down regulation of 4-nitrophenol UDPGT activity|negative regulation of UDPGT activity|down regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|down-regulation of bilirubin monoglucuronide glucuronyltransferase activity|down regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|inhibition of p-phenylphenol glucuronyltransferase activity|down regulation of UDP glucuronyltransferase activity|down regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|down-regulation of uridine 5'-diphosphoglucuronyltransferase activity|downregulation of 17-OH steroid UDPGT activity|down regulation of bilirubin glucuronyltransferase activity|negative regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|down-regulation of morphine glucuronyltransferase activity|down regulation of GT activity|downregulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|down regulation of 4-nitrophenol UDP-glucuronyltransferase activity|inhibition of 4-nitrophenol UDPGT activity|down regulation of UDPGT activity|negative regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|down-regulation of pnp-UDPGT activity|down-regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|inhibition of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of GT activity|downregulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|down regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of bilirubin uridine diphosphoglucuronyltransferase activity|downregulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|downregulation of p-nitrophenol UDP-glucuronyltransferase activity|down-regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|down regulation of morphine glucuronyltransferase activity|down regulation of glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|down regulation of PNP-UDPGT|downregulation of UDP glucuronyltransferase activity|down-regulation of 4-nitrophenol UDPGT activity|inhibition of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|down-regulation of UDP-glucuronyltransferase activity|downregulation of UDPGA-glucuronyltransferase activity|downregulation of bilirubin UDP-glucuronosyltransferase activity|inhibition of UDP-glucuronate-bilirubin glucuronyltransferase activity|downregulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|downregulation of p-nitrophenol UDP-glucuronosyltransferase activity|down-regulation of UDP glucuronate-estriol glucuronosyltransferase activity|negative regulation of UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|downregulation of pnp-UDPGT activity|downregulation of UDP glucuronic acid transferase activity|inhibition of uridine diphosphoglucuronosyltransferase activity|negative regulation of uridine 5'-diphosphoglucuronyltransferase activity|inhibition of 1-naphthol-UDP-glucuronosyltransferase activity|negative regulation of morphine glucuronyltransferase activity|down regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|down-regulation of bilirubin UDP-glucuronosyltransferase activity|down-regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|negative regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|down regulation of 1-naphthol glucuronyltransferase activity|down regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|negative regulation of pnp-UDPGT activity|inhibition of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|inhibition of UDPGT activity|downregulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|downregulation of bilirubin glucuronyltransferase activity|downregulation of UDP glucuronate-estriol glucuronosyltransferase activity|down regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|inhibition of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|negative regulation of 1-naphthol glucuronyltransferase activity|negative regulation of uridine diphosphoglucuronosyltransferase activity|down-regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|down regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|down-regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|negative regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|downregulation of uridine diphosphate glucuronyltransferase activity|downregulation of uridine 5'-diphosphoglucuronyltransferase activity|inhibition of uridine diphosphate glucuronyltransferase activity|inhibition of UDP glucuronate-estradiol-glucuronosyltransferase activity|negative regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|down regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|down regulation of p-nitrophenol UDP-glucuronyltransferase activity|negative regulation of estriol UDPglucuronosyltransferase activity|down regulation of uridine diphosphoglucuronyltransferase activity|down regulation of uridine 5'-diphosphoglucuronyltransferase activity|down-regulation of UDPGA-glucuronyltransferase activity|down regulation of UDP glucuronic acid transferase activity|inhibition of UDP-glucuronosyltransferase activity|down-regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|downregulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|down regulation of p-phenylphenol glucuronyltransferase activity|negative regulation of GT activity|downregulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|downregulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|down-regulation of p-nitrophenylglucuronosyltransferase activity|down-regulation of 3-OH androgenic UDPGT activity|negative regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|down-regulation of uridine diphosphate glucuronyltransferase activity|down-regulation of estrone UDPglucuronosyltransferase activity|down-regulation of ciramadol UDP-glucuronyltransferase activity|down regulation of UDP glucuronate-estriol glucuronosyltransferase activity|down-regulation of p-nitrophenol UDP-glucuronyltransferase activity|inhibition of ciramadol UDP-glucuronyltransferase activity|negative regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|inhibition of glucuronosyltransferase activity|downregulation of PNP-UDPGT|inhibition of bilirubin UDP-glucuronosyltransferase activity|negative regulation of 3-OH androgenic UDPGT activity|inhibition of UDPGA transferase activity|down regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|negative regulation of estrone UDPglucuronosyltransferase activity|downregulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|down-regulation of estriol UDPglucuronosyltransferase activity|down-regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|down-regulation of uridine diphosphoglucuronyltransferase activity|negative regulation of UDP glucuronic acid transferase activity|negative regulation of UDPGA transferase activity|negative regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|down-regulation of PNP-UDPGT|down-regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|down regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|downregulation of 3-OH androgenic UDPGT activity|down-regulation of 17-OH steroid UDPGT activity|down regulation of 3-OH androgenic UDPGT activity|inhibition of pnp-UDPGT activity|down-regulation of UDP glucuronyltransferase activity|inhibition of 3-OH androgenic UDPGT activity|negative regulation of 17-OH steroid UDPGT activity|inhibition of bilirubin UDPGT activity|downregulation of estrone UDPglucuronosyltransferase activity|negative regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|inhibition of GT activity|down-regulation of GT activity|negative regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|down regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|down-regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|down regulation of ciramadol UDP-glucuronyltransferase activity|down regulation of uridine diphosphoglucuronosyltransferase activity|down-regulation of 1-naphthol glucuronyltransferase activity|down-regulation of UDPGA transferase activity|negative regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|negative regulation of 4-nitrophenol UDP-glucuronyltransferase activity|inhibition of UDPGA-glucuronyltransferase activity|negative regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|downregulation of 4-nitrophenol UDPGT activity|down-regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|inhibition of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|negative regulation of uridine diphosphate glucuronyltransferase activity|down regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|down regulation of UDP-glucuronyltransferase activity|down regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|down-regulation of UDP glucuronic acid transferase activity|down-regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|down regulation of uridine diphosphate glucuronyltransferase activity|negative regulation of UDP glucuronosyltransferase activity i2 UDP-glucuronosyltransferase splice species alter glucuronidation activity of i1 UDP-glucuronosyltransferase splice species rl 2015-05-15T08:44:26Z biological_process owl:Class GO:1904223 biolink:NamedThing regulation of glucuronosyltransferase activity Any process that modulates the frequency, rate or extent of glucuronosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of 17-OH steroid UDPGT activity|regulation of p-phenylphenol glucuronyltransferase activity|regulation of 4-nitrophenol UDP-glucuronyltransferase activity|regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|regulation of UDPGA-glucuronyltransferase activity|regulation of uridine diphosphoglucuronyltransferase activity|regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|regulation of UDPGA transferase activity|regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|regulation of PNP-UDPGT|regulation of pnp-UDPGT activity|regulation of UDP glucuronic acid transferase activity|regulation of p-nitrophenol UDP-glucuronosyltransferase activity|regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|regulation of bilirubin UDP-glucuronosyltransferase activity|regulation of 1-naphthol glucuronyltransferase activity|regulation of UDP-glucuronosyltransferase activity|regulation of morphine glucuronyltransferase activity|regulation of phenyl-UDP-glucuronosyltransferase activity|regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|regulation of p-nitrophenol UDP-glucuronyltransferase activity|regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|regulation of estriol UDPglucuronosyltransferase activity|regulation of uridine 5'-diphosphoglucuronyltransferase activity|regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|regulation of UDP glucuronyltransferase activity|regulation of bilirubin glucuronyltransferase activity|regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|regulation of uridine diphosphoglucuronosyltransferase activity|regulation of bilirubin uridine diphosphoglucuronyltransferase activity|regulation of UDP-glucuronyltransferase activity|regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|regulation of ciramadol UDP-glucuronyltransferase activity|regulation of bilirubin monoglucuronide glucuronyltransferase activity|regulation of p-nitrophenylglucuronosyltransferase activity|regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|regulation of UDP glucuronate-estriol glucuronosyltransferase activity|regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|regulation of 4-nitrophenol UDPGT activity|regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|regulation of bilirubin UDPGT activity|regulation of uridine diphosphate glucuronyltransferase activity|regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|regulation of UDPGT activity|regulation of UDP glucuronosyltransferase activity|regulation of estrone UDPglucuronosyltransferase activity|regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|regulation of 1-naphthol-UDP-glucuronosyltransferase activity|regulation of 3-OH androgenic UDPGT activity|regulation of GT activity i2 UDP-glucuronosyltransferase splice species alter glucuronidation activity of i1 UDP-glucuronosyltransferase splice species rl 2015-05-15T08:44:20Z biological_process owl:Class GO:0034342 biolink:NamedThing response to type III interferon Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type III interferon stimulus. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl response to interferon-lambda|response to type III IFN biological_process owl:Class GO:0120045 biolink:NamedThing stereocilium maintenance The organization process that preserves a stereocilium in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl krc 2017-05-15T20:55:13Z biological_process owl:Class GO:0060122 biolink:NamedThing inner ear receptor cell stereocilium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of inner ear receptor cells. tmpzr1t_l9r_go_relaxed.owl inner ear hair cell receptor stereocilium organization|inner ear receptor stereocilium organization and biogenesis|inner ear receptor stereocilium organisation biological_process owl:Class GO:0034082 biolink:NamedThing type II polyketide synthase complex A polyketide synthase complex that consists of several different polypeptide chains, each of which catalyzes a single reaction. tmpzr1t_l9r_go_relaxed.owl type II PKS|type II polyketide synthase|type II PKS complex cellular_component owl:Class GO:0034081 biolink:NamedThing polyketide synthase complex A protein complex that carries out enzymatic reactions involved in the biosynthesis of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones. tmpzr1t_l9r_go_relaxed.owl PKS complex|PKS cellular_component owl:Class GO:0004747 biolink:NamedThing ribokinase activity Catalysis of the reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl deoxyribokinase activity|D-ribokinase activity|ATP:D-ribose 5-phosphotransferase activity|ribokinase (phosphorylating) EC:2.7.1.15|MetaCyc:RIBOKIN-RXN|RHEA:13697|Reactome:R-HSA-8955844 molecular_function owl:Class GO:0019200 biolink:NamedThing carbohydrate kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a carbohydrate substrate molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8931653 molecular_function owl:Class GO:0048202 biolink:NamedThing clathrin coating of Golgi vesicle The addition of clathrin and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl clathrin coating of Golgi-derived vesicle biological_process owl:Class GO:0048200 biolink:NamedThing Golgi transport vesicle coating The addition of specific coat proteins to Golgi membranes during the formation of transport vesicles. tmpzr1t_l9r_go_relaxed.owl dictyosome transport vesicle coating biological_process owl:Class GO:0030130 biolink:NamedThing clathrin coat of trans-Golgi network vesicle A clathrin coat found on a vesicle of the trans-Golgi network. tmpzr1t_l9r_go_relaxed.owl clathrin coat of TGN vesicle cellular_component owl:Class GO:0030125 biolink:NamedThing clathrin vesicle coat A clathrin coat found on a vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008309 biolink:NamedThing double-stranded DNA exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl double-stranded DNA specific exodeoxyribonuclease activity molecular_function owl:Class GO:0016895 biolink:NamedThing exodeoxyribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl exonuclease VIII activity|exodeoxyribonuclease activity, producing 5' phosphomonoesters EC:3.1.11.- GO:0008858 molecular_function owl:Class GO:1901897 biolink:NamedThing regulation of relaxation of cardiac muscle Any process that modulates the frequency, rate or extent of relaxation of cardiac muscle. tmpzr1t_l9r_go_relaxed.owl rl 2013-02-06T21:26:58Z biological_process owl:Class GO:0005360 biolink:NamedThing insulin-responsive glucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + H(out)+ = glucose(in) + H(in)+, in response to a stimulus by insulin. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl insulin-responsive hydrogen:glucose transporter activity|insulin-responsive hydrogen:glucose symporter activity|transepithelial hydrogen/glucose transporter activity molecular_function owl:Class GO:0005356 biolink:NamedThing glucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose + H+ = glucose + H+. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl transepithelial hydrogen:glucose symporter activity|hydrogen:glucose symporter activity|hydrogen:glucose transporter activity|transepithelial hydrogen/glucose transporter activity|transepithelial hydrogen:glucose transporter activity GO:0005361 molecular_function owl:Class GO:0061203 biolink:NamedThing striated muscle paramyosin thick filament assembly The aggregation, arrangement and bonding together of proteins to form the paramyosin-based thick filaments of myofibrils in striated muscle. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-29T12:22:31Z biological_process owl:Class GO:0061204 biolink:NamedThing paramyosin filament assembly or disassembly The formation or disassembly of a filament composed of paramyosin molecules. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-29T12:26:38Z biological_process owl:Class GO:0099513 biolink:NamedThing polymeric cytoskeletal fiber A component of the cytoskeleton consisting of a homo or heteropolymeric fiber constructed from an indeterminate number of protein subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000830 biolink:NamedThing positive regulation of parathyroid hormone secretion Any process that activates or increases the frequency, rate or extent of parathyroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of PTH secretion|positive regulation of parathormone secretion|positive regulation of parathyrin secretion bf 2011-07-26T08:38:00Z biological_process owl:Class GO:2000828 biolink:NamedThing regulation of parathyroid hormone secretion Any process that modulates the frequency, rate or extent of parathyroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of parathyrin secretion|regulation of PTH secretion|regulation of parathormone secretion bf 2011-07-26T08:37:53Z biological_process owl:Class GO:0046494 biolink:NamedThing rhizobactin 1021 metabolic process The chemical reactions and pathways involving rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti. tmpzr1t_l9r_go_relaxed.owl rhizobactin 1021 metabolism biological_process owl:Class GO:0022023 biolink:NamedThing radial glial cell fate commitment in forebrain The process in which the developmental fate of a cell becomes restricted such that it will develop into a radial glial cell in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021898 biolink:NamedThing commitment of multipotent stem cells to neuronal lineage in forebrain The initial commitment of cells whereby the developmental fate of a cell becomes restricted such that it will develop into some type of neuron in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000297 biolink:NamedThing negative regulation of synapse maturation Any process that stops, prevents or reduces the frequency, rate or extent of synapse maturation. tmpzr1t_l9r_go_relaxed.owl negative regulation of synaptic maturation mah 2010-12-23T11:37:31Z biological_process owl:Class GO:1905809 biolink:NamedThing negative regulation of synapse organization Any process that stops, prevents or reduces the frequency, rate or extent of synapse organization. tmpzr1t_l9r_go_relaxed.owl inhibition of synapse morphogenesis|down-regulation of synapse organization|down regulation of synapse organization and biogenesis|negative regulation of synapse morphogenesis|inhibition of synapse organisation|inhibition of synapse organization|down regulation of synapse morphogenesis|inhibition of synapse organization and biogenesis|downregulation of synapse morphogenesis|downregulation of synapse organization|negative regulation of synapse organization and biogenesis|down-regulation of synapse development|downregulation of synapse development|negative regulation of synapse development|negative regulation of synapse organisation|downregulation of synapse organization and biogenesis|down regulation of synapse organisation|down regulation of synapse development|inhibition of synapse development|downregulation of synapse organisation|down-regulation of synapse morphogenesis|down-regulation of synapse organization and biogenesis|down regulation of synapse organization|down-regulation of synapse organisation tb 2017-01-11T22:03:41Z biological_process owl:Class GO:0060450 biolink:NamedThing positive regulation of hindgut contraction Any process that increases the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043134 biolink:NamedThing regulation of hindgut contraction Any process that modulates the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904260 biolink:NamedThing negative regulation of basement membrane assembly involved in embryonic body morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of basement membrane assembly involved in embryonic body morphogenesis|down regulation of basement membrane assembly involved in embryonic body morphogenesis|inhibition of basement membrane assembly involved in embryonic body morphogenesis|down-regulation of basement membrane assembly involved in embryonic body morphogenesis als 2015-05-21T09:20:49Z biological_process owl:Class GO:1904259 biolink:NamedThing regulation of basement membrane assembly involved in embryonic body morphogenesis Any process that modulates the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis. tmpzr1t_l9r_go_relaxed.owl als 2015-05-21T09:20:43Z biological_process owl:Class GO:0090285 biolink:NamedThing negative regulation of protein glycosylation in Golgi Any process that decreases the rate, frequency, or extent of the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in any compartment of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein amino acid glycosylation in Golgi tb 2010-02-18T02:43:55Z biological_process owl:Class GO:0015547 biolink:NamedThing nalidixic acid transmembrane transporter activity Enables the transfer of nalidixic acid from one side of a membrane to the other. Nalidixic acid is a synthetic antibiotic that interferes with DNA gyrase and inhibits prokaryotic replication. tmpzr1t_l9r_go_relaxed.owl carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity|nalidixic acid transporter activity molecular_function owl:Class GO:0044303 biolink:NamedThing axon collateral Any of the smaller branches of an axon that emanate from the main axon cylinder. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1470140754 jl 2010-02-05T11:29:04Z cellular_component owl:Class GO:0019263 biolink:NamedThing adamantanone catabolic process The chemical reactions and pathways resulting in the breakdown of adamantanone, tricyclo(3.3.1.13,7)decanone, a white crystalline solid used as an intermediate for microelectronics in the production of photoresists. tmpzr1t_l9r_go_relaxed.owl adamantanone catabolism|adamantanone degradation|adamantanone breakdown MetaCyc:P481-PWY biological_process owl:Class GO:2000392 biolink:NamedThing regulation of lamellipodium morphogenesis Any process that modulates the frequency, rate or extent of lamellipodium morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of lamellipodium organization mah 2011-02-22T11:18:58Z biological_process owl:Class GO:0051271 biolink:NamedThing negative regulation of cellular component movement Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of a cellular component. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular component motion biological_process owl:Class GO:0031163 biolink:NamedThing metallo-sulfur cluster assembly The incorporation of a metal and exogenous sulfur into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl metallo-sulfur cluster biosynthesis|metal-sulfur cluster assembly|metallo-sulphur cluster assembly biological_process owl:Class GO:0009617 biolink:NamedThing response to bacterium Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. tmpzr1t_l9r_go_relaxed.owl response to bacteria GO:0009680|GO:0009618 biological_process owl:Class GO:0075040 biolink:NamedThing regulation of establishment of turgor in appressorium Any process modulates the frequency, rate or extent of turgor formation in the symbiont appressorium. tmpzr1t_l9r_go_relaxed.owl regulation of turgor formation in appressorium biological_process owl:Class GO:0050094 biolink:NamedThing methionine-glyoxylate transaminase activity Catalysis of the reaction: L-methionine + glyoxylate = 4-methylthio-2-oxobutanoate + glycine. tmpzr1t_l9r_go_relaxed.owl L-methionine:glyoxylate aminotransferase activity|MGAT activity|methionine-glyoxylate aminotransferase activity KEGG_REACTION:R00652|EC:2.6.1.73|RHEA:22884|MetaCyc:METHIONINE--GLYOXYLATE-TRANSAMINASE-RXN molecular_function owl:Class GO:0080169 biolink:NamedThing cellular response to boron-containing substance deprivation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of boron obtained from boron-containing substances. tmpzr1t_l9r_go_relaxed.owl cellular response to boron deprivation|cellular response to boron starvation dhl 2010-09-23T05:10:00Z biological_process owl:Class GO:0062197 biolink:NamedThing cellular response to chemical stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl dph 2019-12-10T14:42:03Z biological_process owl:Class GO:0019414 biolink:NamedThing aerobic respiration, using sulfur or sulfate as electron donor An aerobic respiration process in which a sulfur-containing molecule (hydrogen sulfide, sulfur, sulfite, thiosulfate, and various polythionates) is oxidized. tmpzr1t_l9r_go_relaxed.owl aerobic respiration, using sulphur or sulphate as electron donor biological_process owl:Class GO:0060336 biolink:NamedThing negative regulation of interferon-gamma-mediated signaling pathway Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interferon-gamma binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of type II IFN-mediated signaling pathway|negative regulation of type II interferon-mediated signaling pathway|negative regulation of gamma-interferon-mediated signaling pathway|negative regulation of immune interferon-mediated signaling pathway|negative regulation of interferon-gamma-mediated signalling pathway biological_process owl:Class GO:0034031 biolink:NamedThing ribonucleoside bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside bisphosphate degradation|ribonucleoside bisphosphate catabolism|ribonucleoside bisphosphate breakdown biological_process owl:Class GO:0050837 biolink:NamedThing peptide cross-linking via L-cysteinyl-L-selenocysteine The formation of a selenide-sulfide bond to form the cystine-like L-cysteinyl-L-selenocysteine, as in vertebrate selenopeptide P. tmpzr1t_l9r_go_relaxed.owl RESID:AA0358 biological_process owl:Class GO:0071420 biolink:NamedThing cellular response to histamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histamine stimulus. Histamine, the biogenic amine 2-(1H-imidazol-4-yl)ethanamine, is involved in local immune responses as well as regulating physiological function in the gut and acting as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl cellular response to histamine stimulus mah 2009-12-14T04:09:25Z biological_process owl:Class GO:0034776 biolink:NamedThing response to histamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histamine stimulus. Histamine, the biogenic amine 2-(1H-imidazol-4-yl)ethanamine, is involved in local immune responses as well as regulating physiological function in the gut and acting as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl response to histamine stimulus biological_process owl:Class GO:1903747 biolink:NamedThing regulation of establishment of protein localization to mitochondrion Any process that modulates the frequency, rate or extent of establishment of protein localization to mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of protein localisation to mitochondrion|regulation of establishment of protein localization in mitochondrion krc 2014-12-12T22:18:09Z biological_process owl:Class GO:0070996 biolink:NamedThing type 1 melanocortin receptor binding Binding to a type 1 melanocortin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 melanocortin receptor ligand mah 2009-11-03T01:50:53Z molecular_function owl:Class GO:0031779 biolink:NamedThing melanocortin receptor binding Binding to a melanocortin receptor. tmpzr1t_l9r_go_relaxed.owl melanocortin receptor ligand molecular_function owl:Class GO:0032948 biolink:NamedThing regulation of alpha-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving alpha-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-glucan metabolism biological_process owl:Class GO:0021579 biolink:NamedThing medulla oblongata morphogenesis The process in which the anatomical structure of the medulla oblongata is generated and organized. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate. tmpzr1t_l9r_go_relaxed.owl medulla morphogenesis|myelencephalon morphogenesis biological_process owl:Class GO:0009789 biolink:NamedThing positive regulation of abscisic acid-activated signaling pathway Any process that activates or increases the frequency, rate or extent of abscisic acid (ABA) signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of abscisic acid mediated signaling pathway|up regulation of abscisic acid mediated signaling|up-regulation of abscisic acid mediated signaling|positive regulation of abscisic acid mediated signalling|stimulation of abscisic acid mediated signaling|activation of abscisic acid mediated signaling|upregulation of abscisic acid mediated signaling biological_process owl:Class GO:2000491 biolink:NamedThing positive regulation of hepatic stellate cell activation Any process that activates or increases the frequency, rate or extent of hepatic stellate cell activation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-14T03:49:48Z biological_process owl:Class GO:0072402 biolink:NamedThing response to DNA integrity checkpoint signaling A process that occurs in response to signals generated as a result of DNA integrity checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in DNA integrity checkpoint|DNA integrity checkpoint effector process mah 2010-12-08T03:32:17Z biological_process owl:Class GO:0072396 biolink:NamedThing response to cell cycle checkpoint signaling A process that occurs in response to signals generated as a result of cell cycle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl G1/S transition checkpoint effector process|response to signal involved in cell cycle checkpoint|G2/M transition checkpoint effector process|response to signal involved in G1/S transition checkpoint|response to G1/S transition checkpoint signaling|cell cycle checkpoint effector process|response to signal involved in G2/M transition checkpoint|response to G2/M transition checkpoint signaling mah 2010-12-08T03:05:46Z GO:0072405|GO:0072408 biological_process owl:Class GO:0046959 biolink:NamedThing habituation A decrease in a behavioral response to a repeated stimulus. This is exemplified by the failure of a person to show a startle response to a loud noise that has been repeatedly presented. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Habituation biological_process owl:Class GO:0046958 biolink:NamedThing nonassociative learning A simple form of learning whereby the repeated presence of a stimulus leads to a change in the probability or strength of the response to that stimulus. There is no association of one type of stimulus with another, rather it is a generalized response to the environment. tmpzr1t_l9r_go_relaxed.owl unconditional response biological_process owl:Class GO:2000711 biolink:NamedThing positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric Any process that activates or increases the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl positive regulation of maintenance of meiotic sister chromatin cohesion at centromere|positive regulation of maintenance of sister chromatin cohesion at centromere at meiosis I|positive regulation of maintenance of centromeric meiotic sister chromatin cohesion mah 2011-06-01T12:41:18Z biological_process owl:Class GO:0034096 biolink:NamedThing positive regulation of maintenance of meiotic sister chromatid cohesion Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090634 biolink:NamedThing microglial cell mediated cytotoxicity The directed killing of a target cell by a microglial cell. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-14T14:04:54Z biological_process owl:Class GO:0002444 biolink:NamedThing myeloid leukocyte mediated immunity Any process involved in the carrying out of an immune response by a myeloid leukocyte. tmpzr1t_l9r_go_relaxed.owl myeloid leucocyte mediated immunity|myeloid leukocyte immune effector process|myeloid leucocyte immune effector process biological_process owl:Class GO:0015621 biolink:NamedThing ferric triacetylfusarinine C transmembrane transporter activity Enables the transfer of ferric triacetylfusarinine C from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035158 biolink:NamedThing regulation of tube diameter, open tracheal system Ensuring that a tube in an open tracheal system is of the correct diameter. When primary branches form their lumens are small (less than 2 micrometers) in caliber and must undergo regulated expansion during larval life to reach their mature size. tmpzr1t_l9r_go_relaxed.owl tracheal tube expansion|tracheal tube dilation|regulation of tracheal tube diameter biological_process owl:Class GO:0035159 biolink:NamedThing regulation of tube length, open tracheal system Ensuring that a tube in an open tracheal system is of the correct length. tmpzr1t_l9r_go_relaxed.owl regulation of tracheal tube length|tracheal tube elongation biological_process owl:Class GO:0102076 biolink:NamedThing beta,beta-carotene-9',10'-cleaving oxygenase activity Catalysis of the reaction: beta-carotene + O2 <=> 10'-apo-beta-carotenal + beta-ionone. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.71|RHEA:26389|MetaCyc:RXN-10741 molecular_function owl:Class GO:1900409 biolink:NamedThing positive regulation of cellular response to oxidative stress Any process that activates or increases the frequency, rate or extent of cellular response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl upregulation of adaptive response to oxidative stress|up-regulation of cellular response to oxidative stress|up regulation of adaptive response to oxidative stress|activation of adaptive response to oxidative stress|upregulation of cellular response to oxidative stress|up regulation of cellular response to oxidative stress|positive regulation of adaptive response to oxidative stress|up-regulation of adaptive response to oxidative stress|activation of cellular response to oxidative stress mah 2012-04-20T03:31:16Z biological_process owl:Class GO:0004081 biolink:NamedThing bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity Catalysis of the reaction: P(1),P(4)-bis(5'-nucleosyl)tetraphosphate + H2O = NTP + NMP. Acts on bis(5'-guanosyl)-, bis(5'-xanthosyl)-, bis(5'-adenosyl)- and bis(5'-uridyl)-tetraphosphate. tmpzr1t_l9r_go_relaxed.owl Ap4A hydrolase activity|dinucleoside tetraphosphatase activity|diadenosinetetraphosphatase (asymmetrical) activity|diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase activity|Ap4Aase activity|bis(5'-adenosyl)-tetraphosphatase activity|dinucleosidetetraphosphatase (asymmetrical) activity|bis(5'-guanosyl)-tetraphosphatase activity|Ap(4)A hydrolase activity|P1,P4-bis(5'-nucleosyl)-tetraphosphate nucleotidohydrolase activity|diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase|diadenosine P1,P4-tetraphosphatase activity|diguanosinetetraphosphatase (asymmetrical) activity|1-P,4-P-bis(5'-nucleosyl)-tetraphosphate nucleotidohydrolase activity|Ap(4)Aase activity|diadenosine 5',5'''-P(1),P(4)-tetraphosphate asymmetrical hydrolase activity EC:3.6.1.17|MetaCyc:3.6.1.17-RXN|Reactome:R-HSA-5696197|RHEA:22484 molecular_function owl:Class GO:0008796 biolink:NamedThing bis(5'-nucleosyl)-tetraphosphatase activity Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021517 biolink:NamedThing ventral spinal cord development The process whose specific outcome is the progression of the ventral region of the spinal cord over time, from its formation to the mature structure. The neurons of the ventral region of the mature spinal cord participate in motor output. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033449 biolink:NamedThing GUU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GUU codon. tmpzr1t_l9r_go_relaxed.owl valine tRNA|GTT codon-amino acid adaptor activity Note that in the standard genetic code, GTT codes for valine. molecular_function owl:Class GO:0061907 biolink:NamedThing negative regulation of AMPA receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of AMPA glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-29T11:55:11Z biological_process owl:Class GO:2000311 biolink:NamedThing regulation of AMPA receptor activity Any process that modulates the frequency, rate or extent of AMPA selective glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity bf 2011-01-18T10:10:28Z biological_process owl:Class GO:1905860 biolink:NamedThing positive regulation of heparan sulfate proteoglycan binding Any process that activates or increases the frequency, rate or extent of heparan sulfate proteoglycan binding. tmpzr1t_l9r_go_relaxed.owl activation of heparan sulfate proteoglycan binding|up regulation of heparan sulfate proteoglycan binding|up-regulation of heparin proteoglycan binding|activation of heparin proteoglycan binding|upregulation of heparin proteoglycan binding|positive regulation of heparin proteoglycan binding|upregulation of heparan sulfate proteoglycan binding|up-regulation of heparan sulfate proteoglycan binding|up regulation of heparin proteoglycan binding bc 2017-01-23T14:25:27Z biological_process owl:Class GO:0034271 biolink:NamedThing phosphatidylinositol 3-kinase complex, class III, type I A class III phosphatidylinositol 3-kinase complex that is involved in autophagy. In budding yeast, this complex consists of Vps30p, Vps34p, Apg14p and Vps15p. tmpzr1t_l9r_go_relaxed.owl autophagy-specific phosphatidylinositol 3-kinase (PtdIns3K) complex|phosphatidylinositol 3-kinase complex I|PtdIns-3-kinase complex I Note that this term should not be confused with '1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; GO:0005943' or '1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex ; GO:0005944'. cellular_component owl:Class GO:0035032 biolink:NamedThing phosphatidylinositol 3-kinase complex, class III A phosphatidylinositol 3-kinase complex that contains a catalytic class III phosphoinositide 3-kinase (PI3K) subunit bound to a regulatory (adaptor) subunit. Additional adaptor proteins may be present. Class III PI3Ks have a substrate specificity restricted to phosphatidylinositol (PI). tmpzr1t_l9r_go_relaxed.owl class III PI3K complex|phosphoinositide 3-kinase complex, class III cellular_component owl:Class GO:0051611 biolink:NamedThing regulation of serotonin uptake Any process that modulates the frequency, rate or extent of the directed movement of the monoamine neurotransmitter serotonin into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of serotonin import|regulation of 5HT uptake|regulation of 5-hydroxytryptamine uptake|regulation of 5-HT uptake biological_process owl:Class GO:0051580 biolink:NamedThing regulation of neurotransmitter uptake Any process that modulates the frequency, rate or extent of the directed movement of a neurotransmitter into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl regulation of neurotransmitter reuptake|regulation of neurotransmitter import biological_process owl:Class GO:0004087 biolink:NamedThing carbamoyl-phosphate synthase (ammonia) activity Catalysis of the reaction: 2 ATP + CO(2) + H(2)O + NH(4)(+) = 2 ADP + carbamoyl phosphate + 5 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl carbon-dioxide--ammonia ligase activity|carbamoylphosphate synthetase (ammonia) activity|carbamoylphosphate synthase activity|carbmoylphosphate synthetase activity|carbamoyl-phosphate synthetase (ammonia) activity|carbon-dioxide:ammonia ligase (ADP-forming, carbamate-phosphorylating)|carbamylphosphate synthetase activity|carbamoylphosphate synthase (ammonia)|carbamylphosphate synthetase I|CPS I activity|carbamoyl phosphate synthase (ammonia) activity|carbamoyl-phosphate synthetase I activity KEGG_REACTION:R00149|RHEA:10624|Reactome:R-HSA-70555|EC:6.3.4.16|MetaCyc:6.3.4.16-RXN molecular_function owl:Class GO:1900831 biolink:NamedThing D-leucine metabolic process The chemical reactions and pathways involving D-leucine. tmpzr1t_l9r_go_relaxed.owl D-leucine metabolism se 2012-06-06T09:37:17Z biological_process owl:Class GO:0032116 biolink:NamedThing SMC loading complex A protein complex required for the loading of a structural maintenance of chromosome (SMC) complex, such as cohesin, condensin or SMC5/SMC6, onto DNA. Appears to be eukaryotically conserved. tmpzr1t_l9r_go_relaxed.owl chromatin loading complex|SCC2/SCC4 loading complex|cohesin loading complex cellular_component owl:Class GO:0007191 biolink:NamedThing adenylate cyclase-activating dopamine receptor signaling pathway The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of adenylate cyclase activity by dopamine receptor signalling pathway|dopamine receptor, adenylate cyclase activating pathway|dopamine receptor, adenylyl cyclase activating pathway biological_process owl:Class GO:0007212 biolink:NamedThing dopamine receptor signaling pathway The series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl dopamine receptor signalling pathway biological_process owl:Class GO:0010518 biolink:NamedThing positive regulation of phospholipase activity Any process that increases the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060193 biolink:NamedThing positive regulation of lipase activity Any process that increases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000156 biolink:NamedThing phosphorelay response regulator activity Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response. tmpzr1t_l9r_go_relaxed.owl two-component response regulator activity https://github.com/geneontology/go-ontology/issues/15611 molecular_function owl:Class GO:0003720 biolink:NamedThing telomerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-164617|Reactome:R-HSA-163090 molecular_function owl:Class GO:0003964 biolink:NamedThing RNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. tmpzr1t_l9r_go_relaxed.owl deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (RNA-directed) activity|RNA-dependent deoxyribonucleate nucleotidyltransferase activity|RNA-directed DNA polymerase, transposon encoded|RNA-directed DNA polymerase, group II intron encoded|RNA revertase activity|revertase activity|reverse transcriptase activity|DNA nucleotidyltransferase (RNA-directed) activity|RNA-dependent DNA polymerase activity|RNA-instructed DNA polymerase activity|RT MetaCyc:RNA-DIRECTED-DNA-POLYMERASE-RXN|EC:2.7.7.49|Reactome:R-HSA-164520|Reactome:R-HSA-164504 molecular_function owl:Class GO:2001030 biolink:NamedThing negative regulation of cellular glucuronidation Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular glucuronide biosynthetic process|negative regulation of cellular glucuronoside biosynthesis|negative regulation of cellular glucuronoside biosynthetic process|negative regulation of cellular glucuronide biosynthesis rl 2011-08-22T01:10:56Z biological_process owl:Class GO:2001029 biolink:NamedThing regulation of cellular glucuronidation Any process that modulates the frequency, rate or extent of cellular glucuronidation. tmpzr1t_l9r_go_relaxed.owl regulation of cellular glucuronide biosynthesis|regulation of cellular glucuronoside biosynthetic process|regulation of cellular glucuronide biosynthetic process|regulation of cellular glucuronoside biosynthesis rl 2011-08-22T01:10:52Z biological_process owl:Class GO:0005834 biolink:NamedThing heterotrimeric G-protein complex Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G protein-coupled receptors to an effector protein. tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GTPase, alpha-subunit|heterotrimeric G-protein GTPase activity|heterotrimeric G-protein GTPase, beta-subunit|heterotrimeric G-protein GTPase, gamma-subunit See also the molecular function term 'G protein-coupled receptor activity ; GO:0004930'. cellular_component owl:Class GO:0004325 biolink:NamedThing ferrochelatase activity Catalysis of the reaction: protoheme = Fe(2+) + protoporphyrin IX. tmpzr1t_l9r_go_relaxed.owl heme synthetase activity|protoheme ferro-lyase (protoporphyrin-forming)|protoheme ferro-lyase activity|heme synthase activity|iron chelatase activity|ferro-protoporphyrin chelatase activity|protoheme ferrolyase activity RHEA:22584|EC:4.99.1.1|MetaCyc:PROTOHEMEFERROCHELAT-RXN|KEGG_REACTION:R00310|Reactome:R-HSA-189465 molecular_function owl:Class GO:0039004 biolink:NamedThing specification of pronephric proximal tubule identity The process in which the proximal tubule of the pronephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:30:30Z biological_process owl:Class GO:0039005 biolink:NamedThing specification of pronephric tubule identity The process in which the tubules arranged along the proximal/distal axis of the pronephric nephron acquire their identity. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:33:56Z biological_process owl:Class GO:0008062 biolink:NamedThing eclosion rhythm The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048512 biolink:NamedThing circadian behavior The specific behavior of an organism that recurs with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl circadian rhythm behavior biological_process owl:Class GO:1990425 biolink:NamedThing ryanodine receptor complex A voltage-gated calcium-release channel complex of the sarcoplasmic or endoplasmic reticulum. It plays an important role in the excitation-contraction (E-C) coupling of muscle cells. RyR comprises a family of ryanodine receptors, widely expressed throughout the animal kingdom. tmpzr1t_l9r_go_relaxed.owl RyR An example of this is RyR1 in rabbit (P11716) in PMID:2550460 (inferred from electron microscopy). anm 2014-07-24T09:36:41Z cellular_component owl:Class GO:0005891 biolink:NamedThing voltage-gated calcium channel complex A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential. tmpzr1t_l9r_go_relaxed.owl voltage-dependent calcium channel complex|voltage gated calcium channel complex|voltage-sensitive calcium channel complex cellular_component owl:Class GO:0070189 biolink:NamedThing kynurenine metabolic process The chemical reactions and pathways involving kynurenine, the amino acid 3-(2-aminobenzoyl)-alanine. tmpzr1t_l9r_go_relaxed.owl kynurenine metabolism biological_process owl:Class GO:2000980 biolink:NamedThing regulation of inner ear receptor cell differentiation Any process that modulates the frequency, rate or extent of inner ear receptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of inner ear hair cell differentiation yaf 2011-08-03T02:38:43Z biological_process owl:Class GO:1900510 biolink:NamedThing negative regulation of pentose catabolic process to ethanol Any process that stops, prevents or reduces the frequency, rate or extent of pentose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl downregulation of pentose catabolism to ethanol|inhibition of pentose catabolic process to ethanol|downregulation of pentose catabolic process to ethanol|down-regulation of pentose catabolic process to ethanol|negative regulation of pentose catabolism to ethanol|down-regulation of pentose catabolism to ethanol|down regulation of pentose catabolic process to ethanol|inhibition of pentose catabolism to ethanol|down regulation of pentose catabolism to ethanol tt 2012-05-02T04:04:51Z biological_process owl:Class GO:1900509 biolink:NamedThing regulation of pentose catabolic process to ethanol Any process that modulates the frequency, rate or extent of pentose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl regulation of pentose catabolism to ethanol tt 2012-05-02T04:04:40Z biological_process owl:Class GO:0032141 biolink:NamedThing single cytosine insertion binding Binding to a double-stranded DNA region containing a single cytosine insertion or a deletion that results in an unpaired cytosine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032138 biolink:NamedThing single base insertion or deletion binding Binding to a double-stranded DNA region containing a single base insertion or deletion. tmpzr1t_l9r_go_relaxed.owl single base insertion binding molecular_function owl:Class GO:0086078 biolink:NamedThing gap junction channel activity involved in bundle of His cell-Purkinje myocyte electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from a bundle of His cell to a Purkinje myocyte. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:34:13Z molecular_function owl:Class GO:0000031 biolink:NamedThing mannosylphosphate transferase activity Catalysis of the transfer of a mannosylphosphate group from one compound to another. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046147 biolink:NamedThing tetrahydrobiopterin catabolic process The chemical reactions and pathways resulting in the breakdown of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydrobiopterin catabolic process|tetrahydrobiopterin catabolism|tetrahydrobiopterin degradation|tetrahydrobiopterin breakdown biological_process owl:Class GO:0034313 biolink:NamedThing diol catabolic process The chemical reactions and pathways resulting in the breakdown of a diol, any alcohol containing two hydroxyl groups attached to saturated carbon atoms. tmpzr1t_l9r_go_relaxed.owl diol catabolism|diol degradation|diol breakdown|dihydric alcohol catabolic process biological_process owl:Class GO:0035231 biolink:NamedThing cytoneme assembly Formation of a cytoneme, a long, thin and polarized actin-based cytoplasmic extension that projects from a cell. tmpzr1t_l9r_go_relaxed.owl cytoneme biogenesis biological_process owl:Class GO:1900856 biolink:NamedThing negative regulation of fumitremorgin B biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of fumitremorgin B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of fumitremorgin B biosynthetic process|down-regulation of fumitremorgin B biosynthetic process|down regulation of fumitremorgin B biosynthetic process di 2012-06-07T09:51:01Z biological_process owl:Class GO:1900855 biolink:NamedThing regulation of fumitremorgin B biosynthetic process Any process that modulates the frequency, rate or extent of fumitremorgin B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of fumitremorgin B anabolism|regulation of Lanosulin synthesis|regulation of Lanosulin formation|regulation of Lanosulin biosynthetic process|regulation of fumitremorgin B biosynthesis|regulation of Lanosulin biosynthesis|regulation of fumitremorgin B synthesis|regulation of Lanosulin anabolism|regulation of fumitremorgin B formation di 2012-06-07T09:50:37Z biological_process owl:Class GO:2000319 biolink:NamedThing regulation of T-helper 17 cell differentiation Any process that modulates the frequency, rate or extent of T-helper 17 cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of T-helper 17 cell development mah 2011-01-18T01:43:48Z biological_process owl:Class GO:0045622 biolink:NamedThing regulation of T-helper cell differentiation Any process that modulates the frequency, rate or extent of T-helper cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of T-helper cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:2000049 biolink:NamedThing positive regulation of cell-cell adhesion mediated by cadherin Any process that activates or increases the frequency, rate or extent of cell-cell adhesion mediated by cadherin. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T12:56:57Z biological_process owl:Class GO:0034473 biolink:NamedThing U1 snRNA 3'-end processing Any process involved in forming the mature 3' end of a U1 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl U1 snRNA 3' end processing biological_process owl:Class GO:1905135 biolink:NamedThing biotin import across plasma membrane The directed movement of biotin from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl biotin import into cell|biotin import jl 2012-12-05T16:30:20Z GO:0044756|GO:1901689 biological_process owl:Class GO:1900577 biolink:NamedThing gerfelin catabolic process The chemical reactions and pathways resulting in the breakdown of gerfelin. tmpzr1t_l9r_go_relaxed.owl gerfelin degradation|gerfelin catabolism|gerfelin breakdown di 2012-05-15T06:42:39Z biological_process owl:Class GO:1900576 biolink:NamedThing gerfelin metabolic process The chemical reactions and pathways involving gerfelin. tmpzr1t_l9r_go_relaxed.owl gerfelin metabolism di 2012-05-15T06:42:19Z biological_process owl:Class GO:1905094 biolink:NamedThing regulation of apolipoprotein A-I-mediated signaling pathway Any process that modulates the frequency, rate or extent of apolipoprotein A-I-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of apolipoprotein A-I-mediated signalling pathway bc 2016-03-31T11:33:48Z biological_process owl:Class GO:0050773 biolink:NamedThing regulation of dendrite development Any process that modulates the frequency, rate or extent of dendrite development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030345 biolink:NamedThing structural constituent of tooth enamel The action of a molecule that contributes to the structural integrity of tooth enamel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030021 biolink:NamedThing extracellular matrix structural constituent conferring compression resistance A constituent of the extracellular matrix that enables the matrix to resist compressive forces; often a proteoglycan. tmpzr1t_l9r_go_relaxed.owl core matrisome|core extracellular matrix Extracellular matrix proteoglycans may be annotated to this term. PMID:8346704 molecular_function owl:Class GO:0019383 biolink:NamedThing (+)-camphor catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone. tmpzr1t_l9r_go_relaxed.owl (+)-camphor degradation|(+)-camphor breakdown|(+)-camphor catabolism MetaCyc:P601-PWY biological_process owl:Class GO:1990942 biolink:NamedThing mitotic metaphase chromosome recapture A mechanism to recapture 'lost' chromosomes (chromosomes which have become detached from the spindle) during metaphase of mitotic chromosome segregation. Chromosomes with unattached kinetochores are migrated along (non polar) spindle microtubules to the mitotic spindle pole body by a combination of microtubule depolymerisation and 'kinetochore sliding' (migration of the chromosome along the microtubule). The chromosome subsequently migrates along the polar spindle microtubule to the metaphase plate. tmpzr1t_l9r_go_relaxed.owl microtubule sliding involved in mitotic metaphase chromosome recapture|microtubule sliding involved in metaphase chromosome retrieval to the spindle pole body|microtubule sliding involved in kinetochore retrieval|microtubule sliding involved in sister kinetochore recapture|sister kinetochore recapture|kinetochore retrieval|metaphase chromosome retrieval to the spindle pole body vw 2016-04-06T14:41:56Z GO:1905185 biological_process owl:Class GO:0051303 biolink:NamedThing establishment of chromosome localization The directed movement of a chromosome to a specific location. tmpzr1t_l9r_go_relaxed.owl chromosome positioning|establishment of chromosome localisation biological_process owl:Class GO:2000760 biolink:NamedThing negative regulation of N-terminal peptidyl-lysine acetylation Any process that stops, prevents or reduces the frequency, rate or extent of N-terminal peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-17T12:58:20Z biological_process owl:Class GO:1903318 biolink:NamedThing negative regulation of protein maturation Any process that stops, prevents or reduces the frequency, rate or extent of protein maturation. tmpzr1t_l9r_go_relaxed.owl downregulation of protein maturation|down regulation of protein maturation|down-regulation of protein maturation|inhibition of protein maturation vw 2014-08-18T12:59:15Z biological_process owl:Class GO:1901117 biolink:NamedThing cephamycin C catabolic process The chemical reactions and pathways resulting in the breakdown of cephamycin C. tmpzr1t_l9r_go_relaxed.owl cephamycin C catabolism|cephamycin C degradation|cephamycin C breakdown yaf 2012-07-11T03:07:13Z biological_process owl:Class GO:0097288 biolink:NamedThing 7-cyano-7-deazaguanine biosynthetic process The chemical reactions and pathways resulting in the formation of the Q nucleoside precursor 7-cyano-7-deazaguanine, also known as 2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile or preQo. tmpzr1t_l9r_go_relaxed.owl 7-cyano-7-deazaguanine biosynthesis|7-cyano-7-deazaguanine synthesis|7-cyano-7-deazaguanine formation|7-cyano-7-deazaguanine anabolism pr 2012-04-25T10:53:47Z biological_process owl:Class GO:0150050 biolink:NamedThing postsynaptic septin cytoskeleton The portion of the septin cytoskeleton contained within the postsynapse. tmpzr1t_l9r_go_relaxed.owl bc 2018-04-26T14:45:52Z cellular_component owl:Class GO:0099571 biolink:NamedThing postsynaptic cytoskeleton The portion of the cytoskeleton contained within the postsynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042300 biolink:NamedThing beta-amyrin synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = beta-amyrin. This reaction is the cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into beta-amyrin. tmpzr1t_l9r_go_relaxed.owl oxidosqualene:beta-amyrin cyclase activity MetaCyc:RXN-7570|EC:5.4.99.- molecular_function owl:Class GO:0005943 biolink:NamedThing phosphatidylinositol 3-kinase complex, class IA A class I phosphatidylinositol 3-kinase complex that possesses 1-phosphatidylinositol-4-phosphate 3-kinase activity; comprises a catalytic class IA phosphoinositide 3-kinase (PI3K) subunit and an associated SH2 domain-containing regulatory subunit that is a member of a family of related proteins often called p85 proteins. Through the interaction with the SH2-containing adaptor subunits, Class IA PI3K catalytic subunits are linked to tyrosine kinase signaling pathways. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol-4-phosphate kinase, class IA complex|phosphoinositide 3-kinase complex, class IA|class IA PI3K complex|1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex GO:0035030 cellular_component owl:Class GO:0097651 biolink:NamedThing phosphatidylinositol 3-kinase complex, class I A phosphatidylinositol 3-kinase complex that contains a catalytic and a regulatory subunit of a phosphatidylinositol 3-kinase (PI3K) enzyme, plus one or more adaptor proteins. Class I PI3Ks phosphorylate phosphatidylinositol [PI], phosphatidylinositol-4-phosphate [PI(4)P] and phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2], and are divided into subclasses A and B according to the type of adaptor subunit with which they associate. The class I PI3K subfamily of genes comprises members in vertebrates, worm and fly, but none in yeast. tmpzr1t_l9r_go_relaxed.owl class I PI3K complex|class I phosphatidylinositol 3-kinase complex pr 2014-09-16T11:19:58Z cellular_component owl:Class GO:0070743 biolink:NamedThing interleukin-23 complex A protein complex that is composed of an interleukin-23 alpha (p19, product of the IL23A gene) and an interleukin-12 beta (p40, product of the IL12B gene) subunit and is secreted into the extracellular space. tmpzr1t_l9r_go_relaxed.owl p19|IL12B|p40|IL-23 complex|IL23A Note that this heterodimeric cytokine utilizes the same beta subunit as IL-12. mah 2009-06-23T01:06:02Z cellular_component owl:Class GO:0036373 biolink:NamedThing L-fucose mutarotase activity Catalysis of the reaction: alpha-L-fucose = beta-L-fucose. tmpzr1t_l9r_go_relaxed.owl type-2 mutarotase activity|alpha-L-fucose 1-epimerase activity|fucose 1-epimerase activity RHEA:25580|EC:5.1.3.29|MetaCyc:RXN0-5298 bf 2013-05-07T09:51:06Z molecular_function owl:Class GO:1905178 biolink:NamedThing regulation of cardiac muscle tissue regeneration Any process that modulates the frequency, rate or extent of cardiac muscle tissue regeneration. tmpzr1t_l9r_go_relaxed.owl rph 2016-05-05T11:30:48Z biological_process owl:Class GO:0070950 biolink:NamedThing regulation of neutrophil mediated killing of bacterium Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a bacterium, the directed killing of a bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-01T02:14:36Z biological_process owl:Class GO:0090538 biolink:NamedThing peptide pheromone secretion The regulated release of a peptide pheromone from a cell. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-11T15:38:29Z biological_process owl:Class GO:0030072 biolink:NamedThing peptide hormone secretion The regulated release of a peptide hormone from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000375 biolink:NamedThing negative regulation of oxygen metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of oxygen metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of diatomic oxygen metabolic process|negative regulation of oxygen metabolism mah 2011-02-11T02:03:44Z biological_process owl:Class GO:0031801 biolink:NamedThing type 4 metabotropic glutamate receptor binding Binding to a type 4 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 4 metabotropic glutamate receptor ligand molecular_function owl:Class GO:1900101 biolink:NamedThing regulation of endoplasmic reticulum unfolded protein response Any process that modulates the frequency, rate or extent of endoplasmic reticulum unfolded protein response. tmpzr1t_l9r_go_relaxed.owl regulation of SREBP-mediated signalling pathway|regulation of erUPR|regulation of ER unfolded protein response ppm 2012-02-15T11:15:27Z biological_process owl:Class GO:1905897 biolink:NamedThing regulation of response to endoplasmic reticulum stress Any process that modulates the frequency, rate or extent of response to endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to endoplasmic reticulum stress|regulation of response to ER stress|regulation of ER stress response bc 2017-02-01T11:42:55Z biological_process owl:Class GO:0070800 biolink:NamedThing negative regulation of conidiophore stalk development Any process that stops, prevents, or reduces the frequency, rate or extent of conidiophore stalk development, a process that leads to the formation of a conidiophore stalk. The conidiophore stalk is part of a specialized hypha that extends aerially from the growth substrate and supports structures from which conidia, or asexual spores, develop. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:10:42Z biological_process owl:Class GO:0102772 biolink:NamedThing sphingolipid long-chain base 4-hydroxylase activity Catalysis of the reaction: O2 + H+ + a dihydroceramide + NAD(P)H = H2O + a phytoceramide + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7797 molecular_function owl:Class GO:1901271 biolink:NamedThing lipooligosaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of lipooligosaccharide. tmpzr1t_l9r_go_relaxed.owl lipooligosaccharide formation|lipooligosaccharide synthesis|lipooligosaccharide anabolism|lipooligosaccharide biosynthesis yaf 2012-08-17T14:31:55Z biological_process owl:Class GO:0090006 biolink:NamedThing regulation of linear element assembly Any process that modulates the rate, frequency or extent of linear element assembly. Linear element assembly is the cell cycle process in which a proteinaceous scaffold, related to the synaptonemal complex, is assembled in association with S. pombe chromosomes during meiotic prophase. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-17T01:05:13Z biological_process owl:Class GO:0060629 biolink:NamedThing regulation of homologous chromosome segregation Any process that modulates the rate, frequency, or extent of homologous chromosome segregation, the cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:41:02Z biological_process owl:Class GO:0080090 biolink:NamedThing regulation of primary metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T04:30:52Z biological_process owl:Class GO:0019222 biolink:NamedThing regulation of metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. tmpzr1t_l9r_go_relaxed.owl regulation of metabolism|regulation of organismal metabolic process|regulation of multicellular organismal metabolic process GO:0044246 biological_process owl:Class GO:0006529 biolink:NamedThing asparagine biosynthetic process The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl asparagine biosynthesis|asparagine synthesis|asparagine anabolism|asparagine formation biological_process owl:Class GO:0006528 biolink:NamedThing asparagine metabolic process The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl asparagine metabolism MetaCyc:ASPARAGINESYN-PWY biological_process owl:Class GO:0070240 biolink:NamedThing negative regulation of activated T cell autonomous cell death Any process that stops, prevents, or reduces the frequency, rate or extent of activated T cell autonomous cell death. tmpzr1t_l9r_go_relaxed.owl negative regulation of activated T cell apoptosis|negative regulation of activated cell autonomous cell death|inhibition of activated T cell autonomous cell death|down-regulation of activated T cell autonomous cell death|negative regulation of activated T-cell autonomous cell death|negative regulation of ACAD|downregulation of activated T cell autonomous cell death|negative regulation of activated T-lymphocyte autonomous cell death|down regulation of activated T cell autonomous cell death|negative regulation of activated T lymphocyte autonomous cell death biological_process owl:Class GO:0015529 biolink:NamedThing raffinose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: raffinose(out) + H+(out) = raffinose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl raffinose:hydrogen symporter activity molecular_function owl:Class GO:0005351 biolink:NamedThing carbohydrate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: carbohydrate(out) + H+(out) = carbohydrate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl proton:sugar symporter activity|cation/sugar symporter activity|lactose/glucose efflux transporter activity|sugar:proton symporter activity|sugar efflux transmembrane transporter activity|sugar:hydrogen ion symporter activity|hydrogen:sugar transporter activity|hydrogen:sugar symporter activity|sugar:hydrogen symporter activity|sugar transporter|sugar porter activity TC:2.A.1.1 GO:0005403|GO:0015542 molecular_function owl:Class GO:0047808 biolink:NamedThing D(-)-tartrate dehydratase activity Catalysis of the reaction: D-tartrate = H(2)O + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl D-tartrate dehydratase activity|(S,S)-tartrate hydro-lyase activity|(S,S)-tartrate hydro-lyase (oxaloacetate-forming) MetaCyc:D--TARTRATE-DEHYDRATASE-RXN|RHEA:18289|EC:4.2.1.81|KEGG_REACTION:R00340 molecular_function owl:Class GO:0015558 biolink:NamedThing secondary active p-aminobenzoyl-glutamate transmembrane transporter activity Enables the transfer of p-aminobenzoyl-glutamate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. p-aminobenzoyl-glutamate is the anion of p-aminobenzoyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl p-aminobenzoyl-glutamate transmembrane transporter activity|p-aminobenzoyl-glutamate transporter activity|p-aminobenzoyl-glutamate uptake permease activity|p-aminobenzoyl-glutamate uptake transmembrane transporter activity GO:0015569 molecular_function owl:Class GO:0047853 biolink:NamedThing difructose-anhydride synthase activity Catalysis of the reaction: H2O + bis-D-fructose 2',1:2,1'-dianhydride = inulobiose. tmpzr1t_l9r_go_relaxed.owl bis-D-fructose 2',1:2,1'-dianhydride fructohydrolase activity|inulobiose hydrolase activity RHEA:15041|MetaCyc:DIFRUCTOSE-ANHYDRIDE-SYNTHASE-RXN|EC:3.2.1.134 molecular_function owl:Class GO:0032352 biolink:NamedThing positive regulation of hormone metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any hormone. tmpzr1t_l9r_go_relaxed.owl up-regulation of hormone metabolic process|positive regulation of hormone metabolism|activation of hormone metabolic process|upregulation of hormone metabolic process|up regulation of hormone metabolic process|stimulation of hormone metabolic process biological_process owl:Class GO:1900503 biolink:NamedThing regulation of cellulosome assembly Any process that modulates the frequency, rate or extent of cellulosome assembly. tmpzr1t_l9r_go_relaxed.owl tt 2012-05-02T03:58:15Z biological_process owl:Class GO:1901854 biolink:NamedThing 5,6,7,8-tetrahydrosarcinapterin catabolic process The chemical reactions and pathways resulting in the breakdown of 5,6,7,8-tetrahydrosarcinapterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydrosarcinapterin breakdown|5,6,7,8-tetrahydrosarcinapterin degradation|5,6,7,8-tetrahydrosarcinapterin catabolism yaf 2013-01-28T11:48:01Z biological_process owl:Class GO:0072352 biolink:NamedThing tricarboxylic acid catabolic process The chemical reactions and pathways resulting in the breakdown of dicarboxylic acids, any organic acid containing three carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl tricarboxylic acid catabolism|tricarboxylic acid breakdown|tricarboxylic acid degradation|tricarboxylate catabolic process|tricarboxylate catabolism mah 2010-11-11T05:11:24Z biological_process owl:Class GO:0007364 biolink:NamedThing establishment of terminal gap gene boundary Specification of the borders of terminal gap gene expression mediated largely by the effects of other gap genes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048859 biolink:NamedThing formation of anatomical boundary The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051945 biolink:NamedThing negative regulation of catecholamine uptake involved in synaptic transmission Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of catecholamine neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of catecholamine uptake during transmission of nerve impulse|negative regulation of catecholamine neurotransmitter uptake|negative regulation of catecholamine neurotransmitter reuptake|downregulation of catecholamine uptake during transmission of nerve impulse|negative regulation of catecholamine uptake during transmission of nerve impulse|inhibition of catecholamine uptake during transmission of nerve impulse|down regulation of catecholamine uptake during transmission of nerve impulse biological_process owl:Class GO:0019392 biolink:NamedThing glucarate metabolic process The chemical reactions and pathways involving glucarate, the dianion of glucaric acid, an aldaric acid derived from either glucose or gulose. There are two enantiomers L- and D-glucarate. tmpzr1t_l9r_go_relaxed.owl glucarate metabolism GO:0019581 biological_process owl:Class GO:0043484 biolink:NamedThing regulation of RNA splicing Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070710 biolink:NamedThing RNA uridine deletion The modification of an RNA molecule by removal of a uridine nucleotide. tmpzr1t_l9r_go_relaxed.owl RNA uridine excision|RNA U deletion mah 2009-06-08T05:12:43Z biological_process owl:Class GO:0070706 biolink:NamedThing RNA nucleotide deletion The modification of an RNA molecule by removal of a single nucleotide. tmpzr1t_l9r_go_relaxed.owl RNA nucleotide excision mah 2009-06-08T04:50:51Z biological_process owl:Class GO:0002802 biolink:NamedThing positive regulation of antifungal peptide secretion Any process that activates or increases the frequency, rate, or extent of antifungal peptide secretion. tmpzr1t_l9r_go_relaxed.owl upregulation of antifungal peptide secretion|up-regulation of antifungal peptide secretion|up regulation of antifungal peptide secretion|activation of antifungal peptide secretion|stimulation of antifungal peptide secretion biological_process owl:Class GO:0002800 biolink:NamedThing regulation of antifungal peptide secretion Any process that modulates the frequency, rate, or extent of antifungal peptide secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002108 biolink:NamedThing maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 5S rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000470 biolink:NamedThing maturation of LSU-rRNA Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900178 biolink:NamedThing negative regulation of aflatoxin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of aflatoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of aflatoxin anabolism|down regulation of aflatoxin biosynthesis|downregulation of aflatoxin biosynthetic process|down-regulation of aflatoxin biosynthetic process|negative regulation of aflatoxin biosynthesis|downregulation of aflatoxin formation|down regulation of aflatoxin anabolism|inhibition of aflatoxin biosynthesis|down-regulation of aflatoxin synthesis|inhibition of aflatoxin anabolism|inhibition of aflatoxin synthesis|down regulation of aflatoxin formation|inhibition of aflatoxin formation|downregulation of aflatoxin synthesis|downregulation of aflatoxin biosynthesis|inhibition of aflatoxin biosynthetic process|down-regulation of aflatoxin anabolism|down regulation of aflatoxin synthesis|down-regulation of aflatoxin formation|negative regulation of aflatoxin synthesis|down-regulation of aflatoxin biosynthesis|negative regulation of aflatoxin formation|negative regulation of aflatoxin anabolism|down regulation of aflatoxin biosynthetic process di 2012-03-09T11:23:42Z biological_process owl:Class GO:0002016 biolink:NamedThing regulation of blood volume by renin-angiotensin The process in which the renin-angiotensin system controls the rate of fluid intake and output into the blood. tmpzr1t_l9r_go_relaxed.owl renin-angiotensin control of body fluid levels|renin-angiotensin regulation of blood volume biological_process owl:Class GO:0051296 biolink:NamedThing establishment of meiotic spindle orientation Any process that set the alignment of meiotic spindle relative to other cellular structures. tmpzr1t_l9r_go_relaxed.owl orienting of meiotic spindle|establishment of spindle orientation involved in meiotic cell cycle|meiotic spindle orientation|establishment of spindle orientation during meiosis biological_process owl:Class GO:0051294 biolink:NamedThing establishment of spindle orientation Any process that set the alignment of spindle relative to other cellular structures. tmpzr1t_l9r_go_relaxed.owl orienting of spindle|spindle orientation biological_process owl:Class GO:0018016 biolink:NamedThing N-terminal peptidyl-proline dimethylation The methylation of the N-terminal proline of proteins to form the derivative N,N-dimethyl-L-proline. tmpzr1t_l9r_go_relaxed.owl RESID:AA0066 biological_process owl:Class GO:0035568 biolink:NamedThing N-terminal peptidyl-proline methylation The methylation of the N-terminal proline of proteins. tmpzr1t_l9r_go_relaxed.owl RESID:AA0419 bf 2010-08-06T01:52:43Z biological_process owl:Class GO:0019823 biolink:NamedThing P5 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P5 peroxisomes are distinguished from the other subforms on the bases of buoyant density and protein content. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P1 peroxisome ; GO:0019819', 'P2 peroxisome ; GO:0019820', 'P3 peroxisome ; GO:0019821', 'P4 peroxisome ; GO:0019822', and 'P6 peroxisome ; GO:0019824'. cellular_component owl:Class GO:0060052 biolink:NamedThing neurofilament cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl neurofilament cytoskeleton organisation|neurofilament cytoskeleton organization and biogenesis biological_process owl:Class GO:0019852 biolink:NamedThing L-ascorbic acid metabolic process The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. tmpzr1t_l9r_go_relaxed.owl L-ascorbic acid metabolism|vitamin C metabolism|ascorbate metabolic process|vitamin C metabolic process|ascorbate metabolism biological_process owl:Class GO:1903078 biolink:NamedThing positive regulation of protein localization to plasma membrane Any process that activates or increases the frequency, rate or extent of protein localization to plasma membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localization in plasma membrane|up regulation of protein-plasma membrane targeting|up regulation of protein localization to plasma membrane|up-regulation of protein localization in plasma membrane|up-regulation of protein-plasma membrane targeting|positive regulation of protein-plasma membrane targeting|activation of protein targeting to plasma membrane|upregulation of protein-plasma membrane targeting|activation of protein localization to plasma membrane|activation of protein localisation in plasma membrane|up regulation of protein localization in plasma membrane|up-regulation of protein localization to plasma membrane|positive regulation of protein targeting to plasma membrane|upregulation of protein localisation in plasma membrane|activation of protein-plasma membrane targeting|up regulation of protein targeting to plasma membrane|upregulation of protein localization to plasma membrane|upregulation of protein targeting to plasma membrane|up regulation of protein localisation in plasma membrane|positive regulation of protein localisation in plasma membrane|up-regulation of protein localisation in plasma membrane|positive regulation of establishment of protein localization to plasma membrane|positive regulation of establishment of protein localisation in plasma membrane|up-regulation of protein targeting to plasma membrane|activation of protein localization in plasma membrane|upregulation of protein localization in plasma membrane tb 2009-07-10T10:34:17Z GO:1905965|GO:0090004 biological_process owl:Class GO:1905763 biolink:NamedThing MTREC complex binding Binding to a MTREC complex. tmpzr1t_l9r_go_relaxed.owl PAXT complex binding|Mtl1-Red1 core complex binding|NURS complex binding https://github.com/geneontology/go-ontology/issues/21207 mah 2016-12-15T15:49:02Z molecular_function owl:Class GO:0015686 biolink:NamedThing ferric triacetylfusarinine C import into cell The directed movement of ferric triacetylfusarinine C into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl ferric triacetylfusarinine C transport biological_process owl:Class GO:0033214 biolink:NamedThing siderophore-dependent iron import into cell A process in which iron (Fe3+) is solubilized by ferric iron-specific chelators, known as siderophores, excreted by a cell; the iron-siderophore complex is then transported into the cell by specific cell surface receptors. tmpzr1t_l9r_go_relaxed.owl iron chelate transport|iron assimilation by capture and transport|iron assimilation by chelation and transport GO:0015688|GO:0033213 biological_process owl:Class GO:1900663 biolink:NamedThing positive regulation of emericellamide A biosynthetic process Any process that activates or increases the frequency, rate or extent of emericellamide A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of emericellamide A formation|activation of emericellamide A synthesis|up-regulation of emericellamide A formation|up regulation of emericellamide A formation|up-regulation of emericellamide A biosynthetic process|upregulation of emericellamide A synthesis|positive regulation of emericellamide A biosynthesis|up-regulation of emericellamide A anabolism|upregulation of emericellamide A biosynthetic process|up regulation of emericellamide A anabolism|positive regulation of emericellamide A anabolism|activation of emericellamide A biosynthesis|positive regulation of emericellamide A synthesis|upregulation of emericellamide A formation|activation of emericellamide A biosynthetic process|upregulation of emericellamide A biosynthesis|up regulation of emericellamide A biosynthesis|up-regulation of emericellamide A biosynthesis|up-regulation of emericellamide A synthesis|positive regulation of emericellamide A formation|upregulation of emericellamide A anabolism|up regulation of emericellamide A synthesis|up regulation of emericellamide A biosynthetic process|activation of emericellamide A anabolism di 2012-05-22T04:13:36Z biological_process owl:Class GO:1900661 biolink:NamedThing regulation of emericellamide A biosynthetic process Any process that modulates the frequency, rate or extent of emericellamide A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of emericellamide A formation|regulation of emericellamide A biosynthesis|regulation of emericellamide A anabolism|regulation of emericellamide A synthesis di 2012-05-22T04:13:07Z biological_process owl:Class GO:1902460 biolink:NamedThing regulation of mesenchymal stem cell proliferation Any process that modulates the frequency, rate or extent of mesenchymal stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of MSC proliferation pm 2013-10-22T10:01:00Z biological_process owl:Class GO:0047997 biolink:NamedThing hydroxypyruvate decarboxylase activity Catalysis of the reaction: 3-hydroxypyruvate + H(+) = CO(2) + glycolaldehyde. tmpzr1t_l9r_go_relaxed.owl hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)|hydroxypyruvate carboxy-lyase activity MetaCyc:HYDROXYPYRUVATE-DECARBOXYLASE-RXN|RHEA:20561|EC:4.1.1.40|KEGG_REACTION:R01393 molecular_function owl:Class GO:2000708 biolink:NamedThing myosin filament organization involved in cytokinetic actomyosin contractile ring assembly A myosin filament organization process that contributes to actomyosin contractile ring assembly during cytokinesis. tmpzr1t_l9r_go_relaxed.owl myosin filament organization of constriction ring assembly|myosin filament organization of cytokinesis, actomyosin contractile ring assembly|myosin filament assembly or disassembly of cytokinesis, actomyosin contractile ring assembly|myosin filament organization of cytokinesis, contractile ring assembly|myosin filament assembly or disassembly of cytokinesis, actomyosin ring biosynthesis|myosin polymerization or depolymerization of cytokinesis, actomyosin ring formation|myosin polymerization or depolymerization of cytokinesis, actomyosin ring biosynthesis|myosin filament assembly or disassembly of constriction ring assembly|myosin filament assembly or disassembly of cytokinesis, contractile ring assembly|myosin filament assembly or disassembly of cytokinesis, actomyosin ring formation|myosin filament organization of cytokinesis, actomyosin ring biosynthesis|myosin polymerization or depolymerization of constriction ring assembly|myosin filament organisation involved in cytokinetic actomyosin contractile ring assembly|myosin polymerization or depolymerization of cytokinesis, actomyosin contractile ring assembly|myosin filament assembly or disassembly of contractile ring assembly|myosin filament organization of cytokinesis, actomyosin contractile ring formation|myosin filament assembly or disassembly of cytokinesis, actomyosin contractile ring formation|myosin polymerization or depolymerization of contractile ring assembly|myosin filament organization of contractile ring assembly|myosin filament organization of cytokinesis, actomyosin ring formation|myosin polymerization or depolymerization of cytokinesis, contractile ring assembly|myosin polymerization or depolymerization of cytokinesis, actomyosin contractile ring formation mah 2011-06-01T12:33:56Z biological_process owl:Class GO:0031033 biolink:NamedThing myosin filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a filament composed of myosin molecules. tmpzr1t_l9r_go_relaxed.owl myosin filament assembly or disassembly|myosin polymerization or depolymerization|myosin filament organisation Note that this term is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins; myosin structures are sufficiently closely associated with actin filaments to be included with the actin cytoskeleton. biological_process owl:Class GO:0018115 biolink:NamedThing peptidyl-S-diphytanylglycerol diether-L-cysteine biosynthetic process from peptidyl-cysteine The modification of cysteine to form peptidyl-S-diphytanylglycerol diether-L-cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-diphytanylglycerol diether-L-cysteine anabolism from peptidyl-cysteine|peptidyl-S-diphytanylglycerol diether-L-cysteine formation from peptidyl-cysteine|peptidyl-S-diphytanylglycerol diether-L-cysteine synthesis from peptidyl-cysteine RESID:AA0223 biological_process owl:Class GO:1903071 biolink:NamedThing positive regulation of ER-associated ubiquitin-dependent protein catabolic process Any process that activates or increases the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of ER-associated protein breakdown|activation of endoplasmic reticulum-associated protein catabolism|positive regulation of ER-associated protein degradation|activation of ERAD|positive regulation of ER-associated protein breakdown|upregulation of endoplasmic reticulum-associated protein catabolic process|upregulation of ERAD|positive regulation of endoplasmic reticulum-associated protein catabolism|up-regulation of ER-associated protein degradation|positive regulation of ER-associated protein catabolism|upregulation of ER-associated protein catabolic process|up regulation of ER-associated protein catabolic process|activation of ER-associated protein catabolic process|positive regulation of ERAD|up regulation of ER-associated ubiquitin-dependent protein catabolic process|upregulation of ER-associated protein degradation|positive regulation of ER-associated protein catabolic process|up-regulation of ER-associated protein catabolism|upregulation of ER-associated ubiquitin-dependent protein catabolic process|up-regulation of ER-associated protein catabolic process|activation of ER-associated protein catabolism|up regulation of ER-associated protein catabolism|up regulation of endoplasmic reticulum-associated protein catabolism|up-regulation of endoplasmic reticulum-associated protein catabolism|up regulation of ER-associated protein degradation|up regulation of endoplasmic reticulum-associated protein catabolic process|positive regulation of endoplasmic reticulum-associated protein catabolic process|activation of ER-associated protein breakdown|upregulation of ER-associated protein catabolism|up-regulation of endoplasmic reticulum-associated protein catabolic process|upregulation of endoplasmic reticulum-associated protein catabolism|upregulation of ER-associated protein breakdown|activation of ER-associated ubiquitin-dependent protein catabolic process|up-regulation of ERAD|activation of endoplasmic reticulum-associated protein catabolic process|up regulation of ER-associated protein breakdown|up regulation of ERAD|up-regulation of ER-associated ubiquitin-dependent protein catabolic process|activation of ER-associated protein degradation rph 2014-05-28T17:54:04Z biological_process owl:Class GO:1904043 biolink:NamedThing positive regulation of cystathionine beta-synthase activity Any process that activates or increases the frequency, rate or extent of cystathionine beta-synthase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of serine sulfhydrase activity|up-regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|up regulation of serine sulfhydrase activity|up regulation of methylcysteine synthase activity|activation of serine sulfhydrylase activity|upregulation of serine sulfhydrylase activity|up-regulation of L-serine hydro-lyase (adding homocysteine)|upregulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|up regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|activation of serine sulfhydrase activity|up regulation of cystathionine beta-synthase activity|up regulation of L-serine hydro-lyase (adding homocysteine)|upregulation of cystathionine beta-synthase activity|up-regulation of beta-thionase activity|up-regulation of cystathionine beta-synthase activity|upregulation of beta-thionase activity|positive regulation of methylcysteine synthase activity|up regulation of serine sulfhydrylase activity|up-regulation of methylcysteine synthase activity|positive regulation of serine sulfhydrase activity|activation of L-serine hydro-lyase (adding homocysteine)|positive regulation of serine sulfhydrylase activity|positive regulation of beta-thionase activity|activation of cystathionine beta-synthase activity|activation of beta-thionase activity|positive regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|activation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|activation of methylcysteine synthase activity|upregulation of L-serine hydro-lyase (adding homocysteine)|up-regulation of serine sulfhydrylase activity|up regulation of beta-thionase activity|upregulation of methylcysteine synthase activity|positive regulation of L-serine hydro-lyase (adding homocysteine)|up-regulation of serine sulfhydrase activity hal 2015-03-16T15:52:53Z biological_process owl:Class GO:1904041 biolink:NamedThing regulation of cystathionine beta-synthase activity Any process that modulates the frequency, rate or extent of cystathionine beta-synthase activity. tmpzr1t_l9r_go_relaxed.owl regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|regulation of serine sulfhydrase activity|regulation of methylcysteine synthase activity|regulation of beta-thionase activity|regulation of L-serine hydro-lyase (adding homocysteine)|regulation of serine sulfhydrylase activity hal 2015-03-16T15:52:41Z biological_process owl:Class GO:0034204 biolink:NamedThing lipid translocation The translocation, or flipping, of lipid molecules from one monolayer of a membrane bilayer to the opposite monolayer. tmpzr1t_l9r_go_relaxed.owl intramembrane lipid transfer biological_process owl:Class GO:1902919 biolink:NamedThing poly(5-hydroxyvalerate) biosynthetic process The chemical reactions and pathways resulting in the formation of poly(5-hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(5-hydroxyvalerate) formation|poly(5-hydroxyvalerate) synthesis|poly(5-hydroxyvalerate) anabolism|poly(5-hydroxyvalerate) biosynthesis tt 2014-04-21T18:47:12Z biological_process owl:Class GO:1902918 biolink:NamedThing poly(5-hydroxyvalerate) metabolic process The chemical reactions and pathways involving poly(5-hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(5-hydroxyvalerate) metabolism tt 2014-04-21T18:47:06Z biological_process owl:Class GO:0005542 biolink:NamedThing folic acid binding Binding to folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. tmpzr1t_l9r_go_relaxed.owl vitamin M binding|folate binding|vitamin B9 binding molecular_function owl:Class GO:0000981 biolink:NamedThing DNA-binding transcription factor activity, RNA polymerase II-specific A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity|RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity|RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding|transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding|RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding|metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity|RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding|copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding|RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding|sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity|RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding|transcription factor|RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding|RNA polymerase II transcription factor activity, sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|sequence-specific distal enhancer binding RNA polymerase II transcription factor activity|metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding|RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding|RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding https://github.com/geneontology/go-ontology/issues/16152|https://github.com/geneontology/go-ontology/issues/15530|https://github.com/geneontology/go-ontology/issues/16131 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. krc 2010-08-10T02:37:21Z GO:0003705|GO:0000982|GO:0001200|GO:0001203|GO:0001133|GO:0001202|GO:0001201 molecular_function owl:Class GO:0008068 biolink:NamedThing extracellularly glutamate-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a channel that opens when glutamate is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl extracellular-glutamate-gated chloride channel activity Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'glutamate receptor activity ; GO:0008066'. molecular_function owl:Class GO:0005234 biolink:NamedThing extracellularly glutamate-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when glutamate is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl extracellular-glutamate-gated ion channel activity Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'glutamate receptor activity ; GO:0008066'. molecular_function owl:Class GO:0002895 biolink:NamedThing regulation of central B cell tolerance induction Any process that modulates the frequency, rate, or extent of central B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042439 biolink:NamedThing ethanolamine-containing compound metabolic process The chemical reactions and pathways involving ethanolamine (2-aminoethanol) and compounds derived from it. tmpzr1t_l9r_go_relaxed.owl ethanolamine-containing compound metabolism|ethanolamine and derivative metabolic process|ethanolamine and derivative metabolism biological_process owl:Class GO:0006576 biolink:NamedThing cellular biogenic amine metabolic process The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. tmpzr1t_l9r_go_relaxed.owl biogenic amine metabolism biological_process owl:Class GO:0045037 biolink:NamedThing protein import into chloroplast stroma The targeting and import of proteins into the chloroplast stroma. Import depends on ATP hydrolysis catalyzed by stromal chaperones. Chloroplast stromal proteins, such as the S subunit of rubisco, have a N-terminal stromal-import sequence of about 44 amino acids which is cleaved from the protein precursor after import. tmpzr1t_l9r_go_relaxed.owl protein transport into chloroplast stroma|chloroplast stroma protein import biological_process owl:Class GO:0106069 biolink:NamedThing synapsis initiation complex A SUMO-E3 ligase complex capable of promoting synapsis, the meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. tmpzr1t_l9r_go_relaxed.owl hjd 2017-11-22T18:50:26Z cellular_component owl:Class GO:0034557 biolink:NamedThing 2-hydroxylaminobenzoate reductase activity Catalysis of the reaction: 2-hydroxylaminobenzoate + NAD(P)H = anthranilate + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl o-hydroxylaminobenzoate nitroreductase activity UM-BBD_reactionID:r0850|MetaCyc:RXN-8848 molecular_function owl:Class GO:0018339 biolink:NamedThing peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid The modification of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid, typical of bacterial ribosomal protein S12. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-beta-methylthioaspartic acid synthesis from peptidyl-aspartic acid|peptidyl-aspartic acid methylthiolation|peptidyl-L-beta-methylthioaspartic acid formation from peptidyl-aspartic acid|peptidyl-L-beta-methylthioaspartic acid anabolism from peptidyl-aspartic acid RESID:AA0232 biological_process owl:Class GO:2000355 biolink:NamedThing negative regulation of ovarian follicle development Any process that stops, prevents or reduces the frequency, rate or extent of ovarian follicle development. tmpzr1t_l9r_go_relaxed.owl negative regulation of follicular phase yaf 2011-02-03T02:01:32Z biological_process owl:Class GO:0032616 biolink:NamedThing interleukin-13 production The appearance of interleukin-13 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-13 secretion|interleukin-13 biosynthetic process|IL-13 production GO:0072611|GO:0042231 biological_process owl:Class GO:0030644 biolink:NamedThing cellular chloride ion homeostasis Any process involved in the maintenance of an internal steady state of chloride ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055064 biolink:NamedThing chloride ion homeostasis Any process involved in the maintenance of an internal steady state of chloride ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050860 biolink:NamedThing negative regulation of T cell receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell. tmpzr1t_l9r_go_relaxed.owl downregulation of T cell receptor signaling pathway|negative regulation of T cell receptor signalling pathway|down-regulation of T cell receptor signaling pathway|inhibition of T cell receptor signaling pathway|negative regulation of T-lymphocyte receptor signaling pathway|negative regulation of T-lymphocyte receptor signalling pathway|negative regulation of T lymphocyte receptor signaling pathway|negative regulation of TCR signaling pathway|negative regulation of T lymphocyte receptor signalling pathway|negative regulation of T-cell receptor signaling pathway|down regulation of T cell receptor signaling pathway biological_process owl:Class GO:0035308 biolink:NamedThing negative regulation of protein dephosphorylation Any process the stops, prevents, or reduces the frequency, rate or extent of removal of phosphate groups from a protein. tmpzr1t_l9r_go_relaxed.owl downregulation of protein amino acid dephosphorylation|inhibition of protein amino acid dephosphorylation|negative regulation of protein amino acid dephosphorylation|down-regulation of protein amino acid dephosphorylation|down regulation of protein amino acid dephosphorylation biological_process owl:Class GO:0035305 biolink:NamedThing negative regulation of dephosphorylation Any process the stops, prevents, or reduces the frequency, rate or extent of removal of phosphate groups from a molecule. tmpzr1t_l9r_go_relaxed.owl downregulation of dephosphorylation|down-regulation of dephosphorylation|down regulation of dephosphorylation|inhibition of dephosphorylation biological_process owl:Class GO:0000500 biolink:NamedThing RNA polymerase I upstream activating factor complex A complex required for the transcription of rDNA by RNA polymerase I. In yeast the complex consists of Rrrn5p, Rrn9p, Rrn10p, histones H3 and H4, and Uaf30p. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I upstream activation factor complex|UAF cellular_component owl:Class GO:0000120 biolink:NamedThing RNA polymerase I transcription regulator complex A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor complex cellular_component owl:Class GO:0042310 biolink:NamedThing vasoconstriction A decrease in the diameter of blood vessels, especially arteries, due to constriction of smooth muscle cells that line the vessels, and usually causing an increase in blood pressure. tmpzr1t_l9r_go_relaxed.owl negative regulation of blood vessel size Wikipedia:Vasoconstriction GO:0045908 biological_process owl:Class GO:0045150 biolink:NamedThing acetoin catabolic process The chemical reactions and pathways resulting in the breakdown of acetoin, 3-hydroxy-2-butanone. tmpzr1t_l9r_go_relaxed.owl acetoin breakdown|acetoin catabolism|acetoin degradation biological_process owl:Class GO:1990720 biolink:NamedThing C2 axonemal microtubule One of two microtubules present in the axonemal central pair. It is distinguishable from the C1 axonemal microtubule (also called C1 tubule) by the presence of differing protein components of the projections. tmpzr1t_l9r_go_relaxed.owl C2 tubule krc 2015-03-27T22:58:40Z cellular_component owl:Class GO:0005879 biolink:NamedThing axonemal microtubule A microtubule in the axoneme of a eukaryotic cilium or flagellum; an axoneme contains nine modified doublet microtubules, which may or may not surround a pair of single microtubules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099074 biolink:NamedThing mitochondrion to lysosome transport Transport from the mitochondrion to the lysosome, mediated by mitochondrion-derived vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099075 biolink:NamedThing mitochondrion-derived vesicle mediated transport Transport from the mitochondrion, mediated by mitochondrion derived vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044309 biolink:NamedThing neuron spine A small membranous protrusion, often ending in a bulbous head and attached to the neuron by a narrow stalk or neck. tmpzr1t_l9r_go_relaxed.owl spine NIF_Subcellular:sao1145756102 jl 2010-02-05T04:25:10Z cellular_component owl:Class GO:0101019 biolink:NamedThing nucleolar exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime distributive hydrolytic exoribonuclease activity and in some taxa (e.g. yeast) endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. tmpzr1t_l9r_go_relaxed.owl bhm cellular_component owl:Class GO:0000178 biolink:NamedThing exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. tmpzr1t_l9r_go_relaxed.owl exosome multienzyme ribonuclease complex|exosome (ribonucleasease complex) Note that this term should not be confused with 'exosome' used in the context of vesicles released from multivesicular bodies. cellular_component owl:Class GO:0039584 biolink:NamedThing suppression by virus of host protein kinase activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protein kinase activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-02T03:04:55Z biological_process owl:Class GO:0071169 biolink:NamedThing establishment of protein localization to chromatin The directed movement of a protein to a part of a chromosome that is organized into chromatin. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to chromatin mah 2009-11-20T11:52:43Z biological_process owl:Class GO:0071168 biolink:NamedThing protein localization to chromatin Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin. tmpzr1t_l9r_go_relaxed.owl protein localisation to chromatin mah 2009-11-20T11:51:20Z biological_process owl:Class GO:0008173 biolink:NamedThing RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-191784 Note that the methyl donor is usually S-adenosyl-L-methionine, but there is at least one exception (see GO:0030698). molecular_function owl:Class GO:1905056 biolink:NamedThing P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration A calcium-transporting P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium-translocating P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration|Ca(2+)-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration|calcium efflux ATPase involved in regulation of presynaptic cytosolic calcium ion concentration|calcium ABC transporter involved in regulation of presynaptic cytosolic calcium ion concentration|ATP phosphohydrolase (Ca2+-transporting) involved in regulation of presynaptic cytosolic calcium ion concentration|Ca2+-pumping ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration|plasma membrane Ca-ATPase involved in regulation of presynaptic cytosolic calcium ion concentration|calcium transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration|calcium-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration|ATPase-coupled calcium ion transmembrane transporter activity involved in regulation of presynaptic cytosolic calcium levels|Ca2+-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration dos 2016-03-17T14:35:25Z molecular_function owl:Class GO:0002696 biolink:NamedThing positive regulation of leukocyte activation Any process that activates or increases the frequency, rate, or extent of leukocyte activation. tmpzr1t_l9r_go_relaxed.owl upregulation of leukocyte activation|positive regulation of immune cell activation|positive regulation of leucocyte activation|up-regulation of leukocyte activation|up regulation of leukocyte activation|stimulation of leukocyte activation|activation of leukocyte activation biological_process owl:Class GO:0002694 biolink:NamedThing regulation of leukocyte activation Any process that modulates the frequency, rate, or extent of leukocyte activation. tmpzr1t_l9r_go_relaxed.owl regulation of leucocyte activation|regulation of immune cell activation biological_process owl:Class GO:0048925 biolink:NamedThing lateral line system development The process whose specific outcome is the progression of the lateral line system over time, from its formation to the mature structure. The lateral line system is a network of sensory organs (neuromasts) and lateral line nerves located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line system develops from cranial ectodermal placodes situated between the eye and ear. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070555 biolink:NamedThing response to interleukin-1 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-1 biological_process owl:Class GO:0047121 biolink:NamedThing isoquinoline 1-oxidoreductase activity Catalysis of the reaction: A + H(2)O + isoquinoline = AH(2) + isoquinolin-1(2H)-one. tmpzr1t_l9r_go_relaxed.owl isoquinoline:acceptor 1-oxidoreductase (hydroxylating) KEGG_REACTION:R05151|MetaCyc:1.3.99.16-RXN|RHEA:11588|EC:1.3.99.16 molecular_function owl:Class GO:0090200 biolink:NamedThing positive regulation of release of cytochrome c from mitochondria Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation. tmpzr1t_l9r_go_relaxed.owl The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly and positively regulate this process. tb 2009-12-18T11:35:20Z biological_process owl:Class GO:0110024 biolink:NamedThing positive regulation of cardiac muscle myoblast proliferation Any process that activates or increases the frequency, rate or extent of cardiac muscle myoblast proliferation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-29T15:24:16Z biological_process owl:Class GO:0006181 biolink:NamedThing dGMP biosynthetic process The chemical reactions and pathways resulting in the formation of dGMP, deoxyguanosine monophosphate (2'-deoxyguanosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dGMP biosynthesis|dGMP anabolism|dGMP synthesis|dGMP formation biological_process owl:Class GO:0015899 biolink:NamedThing aminotriazole transport The directed movement of aminotriazole into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aminotriazole is an effective weed killer that also possesses some antithyroid activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051631 biolink:NamedThing regulation of acetylcholine uptake Any process that modulates the frequency, rate or extent of the directed movement of the neurotransmitter acetylcholine into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of acetylcholine import biological_process owl:Class GO:0035867 biolink:NamedThing alphav-beta3 integrin-IGF-1-IGF1R complex A protein complex that consists of an alphav-beta3 integrin complex bound to insulin-like growth factor-1 (IGF-1) and type I insulin-like growth factor receptor (IGF1R). IGF1R is a heterotetramer that consists of two alpha-subunits and two beta-subunits. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-25T03:06:30Z cellular_component owl:Class GO:0009707 biolink:NamedThing chloroplast outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. tmpzr1t_l9r_go_relaxed.owl chloroplast outer envelope cellular_component owl:Class GO:0030881 biolink:NamedThing beta-2-microglobulin binding Binding to beta-2-microglobulin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2001073 biolink:NamedThing cyclodextrin binding Binding to cyclodextrin. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T12:24:30Z molecular_function owl:Class GO:0097085 biolink:NamedThing interferon regulatory factor 3-interferon regulatory factor 5 complex An interferon regulatory factor complex that consists of a heterodimer of interferon regulatory factor 3 and interferon regulatory factor 5. tmpzr1t_l9r_go_relaxed.owl IRF3:IRF5 complex pr 2011-06-21T06:30:30Z cellular_component owl:Class GO:0097071 biolink:NamedThing interferon regulatory factor complex A protein complex that consists of two interferon regulatory proteins (IRFs); may be homodimeric or heterodimeric. The activation of a latent closed conformation of IRF in the cytoplasm is triggered by phosphorylation of Ser/Thr residues in a C-terminal region. Phosphorylation stimulates the C-terminal autoinhibitory domain to attain a highly extended conformation triggering dimerization through extensive contacts to a second subunit. tmpzr1t_l9r_go_relaxed.owl IRF complex pr 2011-06-15T04:22:30Z cellular_component owl:Class GO:0008191 biolink:NamedThing metalloendopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of metalloendopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain and contain a chelated metal ion at their active sites which is essential to their catalytic activity. tmpzr1t_l9r_go_relaxed.owl metalloproteinase inhibitor|metalloprotease inhibitor molecular_function owl:Class GO:1903053 biolink:NamedThing regulation of extracellular matrix organization Any process that modulates the frequency, rate or extent of extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl regulation of extracellular matrix organization and biogenesis|regulation of extracellular matrix organisation rl 2014-05-23T17:15:41Z biological_process owl:Class GO:0061316 biolink:NamedThing canonical Wnt signaling pathway involved in heart development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the progression of the heart over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in heart development|canonical Wnt-activated signaling pathway involved in heart development|canonical Wnt receptor signalling pathway involved in heart development dph 2010-09-24T09:25:03Z biological_process owl:Class GO:0021695 biolink:NamedThing cerebellar cortex development The process whose specific outcome is the progression of the cerebellar cortex over time, from its formation to the mature structure. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086027 biolink:NamedThing AV node cell to bundle of His cell signaling Any process that mediates the transfer of information from an AV node cardiac muscle cell to a bundle of His cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl AV node cell to bundle of His cell signalling|atrioventricular node to bundle of His cell signaling tb 2011-11-11T02:02:14Z biological_process owl:Class GO:0031068 biolink:NamedThing positive regulation of histone deacetylation at centromere Any process that activates or increases the frequency, rate or extent of the removal of acetyl groups from histones in centromeric DNA. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone deacetylation at centromere|up regulation of histone deacetylation at centromere|upregulation of histone deacetylation at centromere|activation of histone deacetylation at centromere|stimulation of histone deacetylation at centromere biological_process owl:Class GO:0031065 biolink:NamedThing positive regulation of histone deacetylation Any process that activates or increases the frequency, rate or extent of the removal of acetyl groups from histones. tmpzr1t_l9r_go_relaxed.owl up regulation of histone deacetylation|up-regulation of histone deacetylation|upregulation of histone deacetylation|stimulation of histone deacetylation|activation of histone deacetylation biological_process owl:Class GO:0032273 biolink:NamedThing positive regulation of protein polymerization Any process that activates or increases the frequency, rate or extent of the process of creating protein polymers. tmpzr1t_l9r_go_relaxed.owl stimulation of protein polymerization|activation of protein polymerization|up-regulation of protein polymerization|upregulation of protein polymerization|up regulation of protein polymerization biological_process owl:Class GO:0010582 biolink:NamedThing floral meristem determinacy The process in which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010022 biolink:NamedThing meristem determinacy The process in which a meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048280 biolink:NamedThing vesicle fusion with Golgi apparatus The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007030 biolink:NamedThing Golgi organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl Golgi organisation|Golgi organization and biogenesis biological_process owl:Class GO:1901480 biolink:NamedThing oleate transmembrane transporter activity Enables the transfer of oleate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl oleate transporter activity RHEA:33655 ab 2012-10-07T17:11:56Z molecular_function owl:Class GO:0015207 biolink:NamedThing adenine transmembrane transporter activity Enables the transfer of adenine, 6-aminopurine, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5672027|Reactome:R-HSA-163215|RHEA:34999 molecular_function owl:Class GO:0005345 biolink:NamedThing purine nucleobase transmembrane transporter activity Enables the transfer of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl purine transmembrane transporter activity|purine base transmembrane transporter activity molecular_function owl:Class GO:0097065 biolink:NamedThing anterior head development The process whose specific outcome is the progression of the anterior part of the head over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-08T12:38:11Z biological_process owl:Class GO:0060322 biolink:NamedThing head development The biological process whose specific outcome is the progression of a head from an initial condition to its mature state. The head is the anterior-most division of the body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006109 biolink:NamedThing regulation of carbohydrate metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates. tmpzr1t_l9r_go_relaxed.owl regulation of carbohydrate metabolism biological_process owl:Class GO:0072085 biolink:NamedThing specification of connecting tubule identity The process in which the connecting tubule of the kidney nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:49:11Z biological_process owl:Class GO:0072081 biolink:NamedThing specification of nephron tubule identity The process in which the tubules arranged along the proximal/distal axis of the nephron acquire their identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:42:34Z biological_process owl:Class GO:0016768 biolink:NamedThing spermine synthase activity Catalysis of the reaction: S-adenosylmethioninamine + spermidine = 5'-methylthioadenosine + spermine. tmpzr1t_l9r_go_relaxed.owl spermine synthetase activity|spermidine aminopropyltransferase activity|S-adenosylmethioninamine:spermidine 3-aminopropyltransferase activity Reactome:R-HSA-351210|MetaCyc:SPERMINE-SYNTHASE-RXN|RHEA:19973|EC:2.5.1.22 molecular_function owl:Class GO:1900516 biolink:NamedThing negative regulation of xylose catabolic process to ethanol Any process that stops, prevents or reduces the frequency, rate or extent of xylose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl down regulation of xylose catabolic process to ethanol|downregulation of xylose catabolic process to ethanol|down regulation of xylose catabolism to ethanol|downregulation of xylose catabolism to ethanol|down-regulation of xylose catabolism to ethanol|inhibition of xylose catabolic process to ethanol|inhibition of xylose catabolism to ethanol|down-regulation of xylose catabolic process to ethanol|negative regulation of xylose catabolism to ethanol tt 2012-05-02T04:09:17Z biological_process owl:Class GO:0014885 biolink:NamedThing detection of injury involved in regulation of muscle adaptation The series of events by which an injury stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl detection of injury involved in regulation of muscle plasticity biological_process owl:Class GO:0014822 biolink:NamedThing detection of wounding The series of events by which an injury stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of injury biological_process owl:Class GO:0060115 biolink:NamedThing vestibular receptor cell fate commitment The process in which a cell becomes committed to become a vestibular receptor cell. tmpzr1t_l9r_go_relaxed.owl vestibular hair cell fate commitment biological_process owl:Class GO:1901989 biolink:NamedThing positive regulation of cell cycle phase transition Any process that activates or increases the frequency, rate or extent of cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl upregulation of cell cycle transition|activation of cell cycle phase transition|up-regulation of cell cycle transition|upregulation of cell cycle phase transition|up regulation of cell cycle phase transition|up-regulation of cell cycle phase transition|up regulation of cell cycle transition|activation of cell cycle transition|positive regulation of cell cycle transition jl 2013-03-19T16:11:37Z biological_process owl:Class GO:1903860 biolink:NamedThing negative regulation of dendrite extension Any process that stops, prevents or reduces the frequency, rate or extent of dendrite extension. tmpzr1t_l9r_go_relaxed.owl up-regulation of dendrite retraction|downregulation of dendrite extension|down regulation of dendrite extension|up regulation of dendrite retraction|down-regulation of dendrite extension|inhibition of dendrite extension An example of this is Mul1 in mouse (UniProt ID Q8VCM5) in PMID:24898855 inferred from mutant phenotype. pad 2015-02-02T15:34:00Z biological_process owl:Class GO:2001288 biolink:NamedThing positive regulation of caveolin-mediated endocytosis Any process that activates or increases the frequency, rate or extent of caveolin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of caveolae-mediated endocytosis|positive regulation of caveolin-dependent endocytosis|positive regulation of caveolae-dependent endocytosis yaf 2011-12-15T04:13:32Z biological_process owl:Class GO:0051624 biolink:NamedThing inhibition of norepinephrine uptake Any process that prevents the activation of the directed movement of norepinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of noradrenaline uptake|inhibition of levarterenol uptake|inhibition of norepinephrine import biological_process owl:Class GO:0051622 biolink:NamedThing negative regulation of norepinephrine uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of norepinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl downregulation of norepinephrine uptake|negative regulation of norepinephrine import|down regulation of norepinephrine uptake|down-regulation of norepinephrine uptake|negative regulation of levarterenol uptake|negative regulation of noradrenaline uptake biological_process owl:Class GO:0006606 biolink:NamedThing protein import into nucleus The directed movement of a protein from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization to nucleus|protein import into cell nucleus|protein nucleus import|protein transport from cytoplasm to nucleus biological_process owl:Class GO:0034504 biolink:NamedThing protein localization to nucleus A process in which a protein transports or maintains the localization of another protein to the nucleus. tmpzr1t_l9r_go_relaxed.owl protein localization in cell nucleus|protein localization in nucleus|protein targeting to nucleus|protein localisation to nucleus 2012-11-07T15:45:54Z GO:0044744 biological_process owl:Class GO:1900712 biolink:NamedThing positive regulation of tensidol B biosynthetic process Any process that activates or increases the frequency, rate or extent of tensidol B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of tensidol B biosynthesis|activation of tensidol B anabolism|upregulation of tensidol B biosynthesis|activation of tensidol B synthesis|upregulation of tensidol B synthesis|upregulation of tensidol B anabolism|up regulation of tensidol B biosynthetic process|positive regulation of tensidol B anabolism|activation of tensidol B biosynthesis|up regulation of tensidol B anabolism|up regulation of tensidol B biosynthesis|up-regulation of tensidol B biosynthesis|upregulation of tensidol B biosynthetic process|up-regulation of tensidol B formation|activation of tensidol B formation|up regulation of tensidol B synthesis|activation of tensidol B biosynthetic process|up regulation of tensidol B formation|up-regulation of tensidol B synthesis|positive regulation of tensidol B synthesis|up-regulation of tensidol B biosynthetic process|positive regulation of tensidol B formation|up-regulation of tensidol B anabolism|upregulation of tensidol B formation di 2012-05-22T05:03:23Z biological_process owl:Class GO:1900710 biolink:NamedThing regulation of tensidol B biosynthetic process Any process that modulates the frequency, rate or extent of tensidol B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of tensidol B synthesis|regulation of tensidol B anabolism|regulation of tensidol B biosynthesis|regulation of tensidol B formation di 2012-05-22T05:02:55Z biological_process owl:Class GO:0010581 biolink:NamedThing regulation of starch biosynthetic process An process which modulate the frequency, rate or extent of starch biosynthesis, the chemical reactions and pathways resulting in the formation of starch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015800 biolink:NamedThing acidic amino acid transport The directed movement of acidic amino acids, amino acids with a pH below 7, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071674 biolink:NamedThing mononuclear cell migration The movement of a mononuclear cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-16T02:11:00Z biological_process owl:Class GO:0002048 biolink:NamedThing pyoverdine metabolic process The chemical reactions and pathways involving the siderochrome pyoverdine. tmpzr1t_l9r_go_relaxed.owl pyoverdine metabolism biological_process owl:Class GO:0033298 biolink:NamedThing contractile vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a contractile vacuole. A specialized vacuole that fills with water from the cytoplasm and then discharges this externally by the opening of contractile vacuole pores. tmpzr1t_l9r_go_relaxed.owl contractile vacuole organization and biogenesis|contractile vacuole organisation biological_process owl:Class GO:0070005 biolink:NamedThing cysteine-type aminopeptidase activity Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 EC:3.4.18.- molecular_function owl:Class GO:0070004 biolink:NamedThing cysteine-type exopeptidase activity Catalysis of the hydrolysis of C- or N-terminal peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018303 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-N3'-histidino tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl-L-N3'-histidino tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-N3'-histidino tetrairon tetrasulphide RESID:AA0285 biological_process owl:Class GO:1900442 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to neutral pH. tmpzr1t_l9r_go_relaxed.owl activation of filamentous growth of a population of unicellular organisms in response to neutral pH|up regulation of filamentous growth of a population of unicellular organisms in response to neutral pH|upregulation of filamentous growth of a population of unicellular organisms in response to neutral pH|up-regulation of filamentous growth of a population of unicellular organisms in response to neutral pH di 2012-04-25T05:56:06Z biological_process owl:Class GO:1900945 biolink:NamedThing negative regulation of isoprene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of isoprene metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of 2-methyl-1,3-butadiene metabolism|down-regulation of isoprene metabolism|inhibition of hemiterpene metabolic process|negative regulation of isoprene metabolism|downregulation of hemiterpene metabolic process|inhibition of 2-methyl-1,3-butadiene metabolism|down-regulation of hemiterpene metabolism|down regulation of 2-methyl-1,3-butadiene metabolism|downregulation of 2-methyl-1,3-butadiene metabolism|down regulation of 2-methyl-1,3-butadiene metabolic process|down-regulation of 2-methyl-1,3-butadiene metabolic process|inhibition of 2-methyl-1,3-butadiene metabolic process|downregulation of 2-methyl-1,3-butadiene metabolic process|down regulation of isoprene metabolic process|negative regulation of 2-methyl-1,3-butadiene metabolic process|downregulation of isoprene metabolism|down-regulation of isoprene metabolic process|inhibition of isoprene metabolism|inhibition of hemiterpene metabolism|down regulation of hemiterpene metabolism|negative regulation of hemiterpene metabolism|downregulation of hemiterpene metabolism|down regulation of isoprene metabolism|inhibition of isoprene metabolic process|negative regulation of hemiterpene metabolic process|down-regulation of hemiterpene metabolic process|down-regulation of 2-methyl-1,3-butadiene metabolism|down regulation of hemiterpene metabolic process|downregulation of isoprene metabolic process tt 2012-06-14T03:19:33Z biological_process owl:Class GO:0071981 biolink:NamedThing exit from diapause The dormancy process that results in exit from diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-21T04:45:40Z biological_process owl:Class GO:0080059 biolink:NamedThing flavonol 3-O-arabinosyltransferase activity Catalysis of the reaction: UDP-arabinose + a flavonol = UDP + a flavonol 3-O-D-arabinoside. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T02:55:11Z molecular_function owl:Class GO:0052636 biolink:NamedThing arabinosyltransferase activity Catalysis of the transfer of an arabinosyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl arabinosyl transferase activity molecular_function owl:Class GO:0072753 biolink:NamedThing cellular response to glutathione Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glutathione stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-25T12:27:39Z biological_process owl:Class GO:1903907 biolink:NamedThing negative regulation of plasma membrane raft polarization Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane raft polarization. tmpzr1t_l9r_go_relaxed.owl down regulation of plasma membrane raft polarization|down-regulation of plasma membrane raft polarization|downregulation of plasma membrane raft polarization|inhibition of plasma membrane raft polarization als 2015-02-09T10:54:05Z biological_process owl:Class GO:1903906 biolink:NamedThing regulation of plasma membrane raft polarization Any process that modulates the frequency, rate or extent of plasma membrane raft polarization. tmpzr1t_l9r_go_relaxed.owl als 2015-02-09T10:53:56Z biological_process owl:Class GO:0009597 biolink:NamedThing detection of virus The series of events in which a stimulus from a virus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of virus GO:0009597 is not a child term of 'detection of symbiont ; GO:0009602' to allow annotation of a virus responding to another (often competing) virus. biological_process owl:Class GO:0010650 biolink:NamedThing positive regulation of cell communication by electrical coupling Any process that increases the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000468 biolink:NamedThing regulation of peroxidase activity Any process that modulates the frequency, rate or extent of peroxidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of peroxidase reaction|regulation of oxyperoxidase activity|regulation of donor:hydrogen-peroxide oxidoreductase activity bf 2011-03-08T02:18:18Z biological_process owl:Class GO:0061832 biolink:NamedThing basal ectoplasmic specialization Testis-specific junction between mature Sertoli cells involved in establishing the blood-testis barrier of the Sertoli cell. tmpzr1t_l9r_go_relaxed.owl basal ES cellular_component owl:Class GO:0102702 biolink:NamedThing 2-carene synthase activity Catalysis of the reaction: geranyl diphosphate <=> (+)-2-carene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-5122 molecular_function owl:Class GO:0004802 biolink:NamedThing transketolase activity Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor. tmpzr1t_l9r_go_relaxed.owl sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity|glycoaldehyde transferase activity|fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase activity|glycolaldehydetransferase activity MetaCyc:1TRANSKETO-RXN|EC:2.2.1.1|Reactome:R-HSA-163751|RHEA:10508|Reactome:R-HSA-163741|Reactome:R-HSA-71324|Reactome:R-HSA-71335 molecular_function owl:Class GO:0016744 biolink:NamedThing transketolase or transaldolase activity Catalysis of the transfer of an aldehyde or ketonic group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring aldehyde or ketonic groups https://github.com/geneontology/go-ontology/issues/20486 EC:2.2.1.- GO:0016745 molecular_function owl:Class GO:0002838 biolink:NamedThing negative regulation of immune response to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of immune response to tumor cell|inhibition of immune response to tumor cell|negative regulation of immune response to tumour cell|downregulation of immune response to tumor cell|down regulation of immune response to tumor cell biological_process owl:Class GO:0050507 biolink:NamedThing indoxyl-UDPG glucosyltransferase activity Catalysis of the reaction: indoxyl + UDP-D-glucose = H(+) + indican + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:indoxyl 3-O-beta-D-glucosyltransferase activity|indoxyl-UDPG-glucosyltransferase activity RHEA:12004|EC:2.4.1.220|MetaCyc:2.4.1.220-RXN|KEGG_REACTION:R06048 molecular_function owl:Class GO:0140200 biolink:NamedThing adenylate cyclase-activating adrenergic receptor signaling pathway involved in regulation of heart rate An adrenergic receptor signaling pathway that modulates the frequency or rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-16T14:33:06Z biological_process owl:Class GO:0097580 biolink:NamedThing intracellular sequestering of copper ion The process of binding or confining copper ions in an intracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl intracellular copper ion storage|intracellular copper ion sequestering|intracellular sequestration of copper ion|intracellular retention of copper ion|intracellular storage of copper ion|intracellular copper ion retention|intracellular copper ion sequestration pr 2014-02-28T11:21:39Z biological_process owl:Class GO:0097578 biolink:NamedThing sequestering of copper ion The process of binding or confining copper ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl copper ion sequestering|copper ion sequestration|copper ion retention|sequestration of copper ion|retention of copper ion|storage of copper ion|copper ion storage pr 2014-02-28T11:15:02Z biological_process owl:Class GO:1904897 biolink:NamedThing regulation of hepatic stellate cell proliferation Any process that modulates the frequency, rate or extent of hepatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of hepatic perisinusoidal cell proliferation|regulation of perisinusoidal cell proliferation|regulation of Ito cell proliferation sl 2016-01-14T15:56:59Z biological_process owl:Class GO:0048145 biolink:NamedThing regulation of fibroblast proliferation Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019229 biolink:NamedThing regulation of vasoconstriction Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097746 biolink:NamedThing blood vessel diameter maintenance Any process that modulates the diameter of blood vessels. tmpzr1t_l9r_go_relaxed.owl regulation of vasodilatation|blood vessel diameter homeostasis|regulation of blood vessel size|regulation of blood vessel diameter|regulation of vasodilation https://github.com/geneontology/go-ontology/issues/12253 pr 2016-11-24T15:45:05Z GO:0042312|GO:0050880 biological_process owl:Class GO:0050165 biolink:NamedThing pantetheine kinase activity Catalysis of the reaction: ATP + pantetheine = ADP + pantetheine 4'-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:pantetheine 4'-phosphotransferase activity|pantetheine kinase (phosphorylating) EC:2.7.1.34|RHEA:22472|MetaCyc:PANTETHEINE-KINASE-RXN molecular_function owl:Class GO:0001501 biolink:NamedThing skeletal system development The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton). tmpzr1t_l9r_go_relaxed.owl skeletal development biological_process owl:Class GO:0010250 biolink:NamedThing S-methylmethionine biosynthetic process The chemical reactions and pathways resulting in the formation of S-methyl-methionine (SMM) from methionine and S-adenosyl-methionine (Ado-Met), catalyzed by methionine S-methyltransferase (MMT). SMM can be reconverted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle. tmpzr1t_l9r_go_relaxed.owl S-methylmethionine formation|S-methylmethionine synthesis|S-methylmethionine biosynthesis|S-methylmethionine anabolism biological_process owl:Class GO:0033477 biolink:NamedThing S-methylmethionine metabolic process The chemical reactions and pathways involving S-methyl-methionine (SMM). SMM can be converted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle. tmpzr1t_l9r_go_relaxed.owl S-methylmethionine metabolism biological_process owl:Class GO:0032735 biolink:NamedThing positive regulation of interleukin-12 production Any process that activates or increases the frequency, rate, or extent of interleukin-12 production. tmpzr1t_l9r_go_relaxed.owl up regulation of interleukin-12 production|activation of interleukin-12 production|positive regulation of IL-12 production|up-regulation of interleukin-12 production|positive regulation of interleukin-12 secretion|stimulation of interleukin-12 production|positive regulation of NKSF production|positive regulation of CLMF production|positive regulation of interleukin-12 biosynthetic process|upregulation of interleukin-12 production GO:2001184|GO:0045084 biological_process owl:Class GO:0061052 biolink:NamedThing negative regulation of cell growth involved in cardiac muscle cell development Any process that decreases the rate, frequency, or extent of the growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T01:11:30Z biological_process owl:Class GO:0010614 biolink:NamedThing negative regulation of cardiac muscle hypertrophy Any process that decreases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043008 biolink:NamedThing ATP-dependent protein binding Binding to a protein or protein complex using energy from ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071635 biolink:NamedThing negative regulation of transforming growth factor beta production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta. tmpzr1t_l9r_go_relaxed.owl negative regulation of transforming growth factor-beta secretion|negative regulation of TGFbeta production|negative regulation of TGF-beta production|negative regulation of TGFB production|negative regulation of TGF-B production|negative regulation of transforming growth factor-beta production mah 2010-02-12T10:39:51Z GO:2001202 biological_process owl:Class GO:0001815 biolink:NamedThing positive regulation of antibody-dependent cellular cytotoxicity Any process that activates or increases the frequency, rate or extent of antibody-dependent cellular cytotoxicity. tmpzr1t_l9r_go_relaxed.owl activation of antibody-dependent cellular cytotoxicity|positive regulation of antibody dependent cell killing|positive regulation of antibody dependent cell death|up-regulation of antibody-dependent cellular cytotoxicity|positive regulation of antibody-dependent cell death|positive regulation of antibody-dependent cell killing|upregulation of antibody-dependent cellular cytotoxicity|up regulation of antibody-dependent cellular cytotoxicity|stimulation of antibody-dependent cellular cytotoxicity biological_process owl:Class GO:1904438 biolink:NamedThing regulation of iron ion import across plasma membrane Any process that modulates the frequency, rate or extent of iron ions import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of ferrous ion import into cell|regulation of ferrous iron import into cell|regulation of ferrous iron import across plasma membrane rl 2015-03-04T14:37:36Z GO:1903989 biological_process owl:Class GO:0034759 biolink:NamedThing regulation of iron ion transmembrane transport Any process that modulates the frequency, rate or extent of the directed movement of iron ions (Fe) from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of iron ion membrane transport|regulation of transmembrane Fe transport|regulation of transmembrane iron transport|regulation of transmembrane iron ion transport biological_process owl:Class GO:2000108 biolink:NamedThing positive regulation of leukocyte apoptotic process Any process that activates or increases the frequency, rate or extent of leukocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of leukocyte apoptosis mah 2010-09-15T01:42:12Z biological_process owl:Class GO:0048679 biolink:NamedThing regulation of axon regeneration Any process that modulates the frequency, rate or extent of axon regeneration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004462 biolink:NamedThing lactoylglutathione lyase activity Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal. tmpzr1t_l9r_go_relaxed.owl (R)-S-lactoylglutathione methylglyoxal-lyase (isomerizing; glutathione-forming)|(R)-S-lactoylglutathione methylglyoxal-lyase (isomerizing) activity|methylglyoxalase activity|glyoxalase I activity|aldoketomutase activity|glyoxylase I|ketone-aldehyde mutase activity RHEA:19069|Reactome:R-HSA-5694071|MetaCyc:GLYOXI-RXN|EC:4.4.1.5|KEGG_REACTION:R02530 molecular_function owl:Class GO:0000274 biolink:NamedThing mitochondrial proton-transporting ATP synthase, stator stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; is thought to prevent futile rotation of the catalytic core. tmpzr1t_l9r_go_relaxed.owl mitochondrial proton-transporting ATP synthase, peripheral stalk cellular_component owl:Class GO:0045230 biolink:NamedThing capsule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl capsule organization and biogenesis|capsule organisation biological_process owl:Class GO:0045229 biolink:NamedThing external encapsulating structure organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. tmpzr1t_l9r_go_relaxed.owl external encapsulating structure organization and biogenesis|external encapsulating structure organisation biological_process owl:Class GO:0071347 biolink:NamedThing cellular response to interleukin-1 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-1 mah 2009-12-11T02:49:17Z biological_process owl:Class GO:0051395 biolink:NamedThing negative regulation of nerve growth factor receptor activity Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the nerve growth factor (NGF) receptor. tmpzr1t_l9r_go_relaxed.owl down-regulation of nerve growth factor receptor activity|downregulation of nerve growth factor receptor activity|down regulation of nerve growth factor receptor activity|negative regulation of NGF receptor activity|inhibition of nerve growth factor receptor activity biological_process owl:Class GO:0051394 biolink:NamedThing regulation of nerve growth factor receptor activity Any process that modulates the frequency, rate or extent of the activity of the nerve growth factor (NGF) receptor. tmpzr1t_l9r_go_relaxed.owl regulation of NGF receptor activity biological_process owl:Class GO:0002884 biolink:NamedThing negative regulation of hypersensitivity Any process that stops, prevents, or reduces the frequency, rate, or extent of hypersensitivity. tmpzr1t_l9r_go_relaxed.owl inhibition of hypersensitivity|down regulation of hypersensitivity|downregulation of hypersensitivity|down-regulation of hypersensitivity biological_process owl:Class GO:1905537 biolink:NamedThing positive regulation of eukaryotic translation initiation factor 4F complex assembly Any process that activates or increases the frequency, rate or extent of eukaryotic translation initiation factor 4F complex assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of eIF-4F assembly|positive regulation of eIF-4F assembly|upregulation of eIF-4F assembly|up-regulation of eukaryotic translation initiation factor 4F complex assembly|up-regulation of eIF-4F assembly|up-regulation of eIF4F assembly|upregulation of eukaryotic translation initiation factor 4F complex assembly|up regulation of eukaryotic translation initiation factor 4F complex assembly|activation of eIF4F assembly|activation of eIF-4F assembly|activation of eukaryotic translation initiation factor 4F complex assembly|positive regulation of eIF4F assembly|upregulation of eIF4F assembly|up regulation of eIF4F assembly bc 2016-10-06T14:05:13Z biological_process owl:Class GO:0001982 biolink:NamedThing baroreceptor response to decreased systemic arterial blood pressure The lowering of the number of nerve impulses from baroreceptors as a result of decreased stretch of an artery that results in an increased in sympathetic nerve impulses to peripheral blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003084 biolink:NamedThing positive regulation of systemic arterial blood pressure The process that increases the force with which blood travels through the systemic arterial circulatory system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002122 biolink:NamedThing fear-induced aggressive behavior Aggressive behavior associated with attempts to flee from a threat. tmpzr1t_l9r_go_relaxed.owl fear-induced aggression biological_process owl:Class GO:2000260 biolink:NamedThing regulation of blood coagulation, common pathway Any process that modulates the frequency, rate or extent of blood coagulation, common pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:42:40Z biological_process owl:Class GO:0015496 biolink:NamedThing putrescine:ornithine antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: putrescine(out) + ornithine(in) = putrescine(in) + ornithine(out). tmpzr1t_l9r_go_relaxed.owl putrescine/ornithine antiporter activity|putrescine-ornithine antiporter activity|putrescine:hydrogen symporter activity molecular_function owl:Class GO:0140323 biolink:NamedThing solute:anion antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: anion(in) + solute(out) = anion(out) + solute(in). tmpzr1t_l9r_go_relaxed.owl pg 2019-04-03T16:23:14Z molecular_function owl:Class GO:0120007 biolink:NamedThing negative regulation of glutamatergic neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of glutamatergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13107 krc 2017-03-01T16:25:50Z biological_process owl:Class GO:0042556 biolink:NamedThing eukaryotic elongation factor-2 kinase regulator activity Modulates the activity of the enzyme eukaryotic elongation factor-2 kinase. tmpzr1t_l9r_go_relaxed.owl eEF-2 kinase regulator molecular_function owl:Class GO:0019887 biolink:NamedThing protein kinase regulator activity Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000490 biolink:NamedThing negative regulation of hepatic stellate cell activation Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell activation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-14T03:49:18Z biological_process owl:Class GO:2000489 biolink:NamedThing regulation of hepatic stellate cell activation Any process that modulates the frequency, rate or extent of hepatic stellate cell activation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-14T03:48:32Z biological_process owl:Class GO:0000502 biolink:NamedThing proteasome complex A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. tmpzr1t_l9r_go_relaxed.owl 26S proteasome|proteasome cellular_component owl:Class GO:0070242 biolink:NamedThing thymocyte apoptotic process Any apoptotic process in a thymocyte, an immature T cell located in the thymus. tmpzr1t_l9r_go_relaxed.owl thymocyte apoptosis|immature T cell apoptosis Note that a thymocyte is an immature T cell located in the thymus (CL:0000893). biological_process owl:Class GO:0070231 biolink:NamedThing T cell apoptotic process Any apoptotic process in a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. tmpzr1t_l9r_go_relaxed.owl T cell apoptosis|T lymphocyte apoptosis|T-lymphocyte apoptosis|T-cell apoptosis|programmed cell death of T cells by apoptosis biological_process owl:Class GO:0015422 biolink:NamedThing ABC-type oligosaccharide transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + oligosaccharide(out) = ADP + phosphate + oligosaccharide(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent oligosaccharide transmembrane transporter activity|oligosaccharide-transporting ATPase activity|oligosaccharide ABC transporter|ATPase-coupled oligosaccharide transmembrane transporter activity|ABC-type oligosaccharide transporter EC:7.5.2.2|MetaCyc:3.6.3.18-RXN GO:0015609 molecular_function owl:Class GO:0031786 biolink:NamedThing type 1B melatonin receptor binding Binding to a type 1B melatonin receptor. tmpzr1t_l9r_go_relaxed.owl type 1B melatonin receptor ligand molecular_function owl:Class GO:0031784 biolink:NamedThing melatonin receptor binding Binding to a melatonin receptor. tmpzr1t_l9r_go_relaxed.owl melatonin receptor ligand molecular_function owl:Class GO:1905377 biolink:NamedThing response to D-galactose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a D-galactose stimulus. tmpzr1t_l9r_go_relaxed.owl response to D-galacto-hexose|response to D-Gal sl 2016-08-17T22:17:25Z biological_process owl:Class GO:0047678 biolink:NamedThing arginine 2-monooxygenase activity Catalysis of the reaction: L-arginine + O(2) = 4-guanidinobutanamide + CO(2) + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-arginine:oxygen 2-oxidoreductase (decarboxylating)|arginine decarboxy-oxidase activity|arginine monooxygenase activity|arginine oxygenase (decarboxylating) activity MetaCyc:ARGININE-2-MONOOXYGENASE-RXN|KEGG_REACTION:R00559|EC:1.13.12.1|RHEA:10548 molecular_function owl:Class GO:0002919 biolink:NamedThing positive regulation of peripheral B cell anergy Any process that activates or increases the frequency, rate, or extent of peripheral B cell anergy. tmpzr1t_l9r_go_relaxed.owl activation of peripheral B cell anergy|up regulation of peripheral B cell anergy|up-regulation of peripheral B cell anergy|upregulation of peripheral B cell anergy|stimulation of peripheral B cell anergy biological_process owl:Class GO:2000542 biolink:NamedThing negative regulation of gastrulation Any process that stops, prevents or reduces the frequency, rate or extent of gastrulation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-01T04:10:08Z biological_process owl:Class GO:0002104 biolink:NamedThing endonucleolytic cleaveage between 4.5S rRNA and 5S rRNA of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Endonucleolytic cleavage between the 5S rRNA and the 4.5S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002103 biolink:NamedThing endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the chloroplasts of vascular plants. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006399 biolink:NamedThing tRNA metabolic process The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established. tmpzr1t_l9r_go_relaxed.owl tRNA metabolism biological_process owl:Class GO:0034660 biolink:NamedThing ncRNA metabolic process The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). tmpzr1t_l9r_go_relaxed.owl ncRNA metabolism biological_process owl:Class GO:0046260 biolink:NamedThing trinitrotoluene catabolic process The chemical reactions and pathways resulting in the breakdown of trinitrotoluene, a methylated benzene entity with three NO2 groups attached to it. This includes the explosive TNT, 1-methyl-2,4,6-trinitrobenzene. tmpzr1t_l9r_go_relaxed.owl trinitrotoluene catabolism|trinitrotoluene degradation|trinitrotoluene breakdown biological_process owl:Class GO:0046263 biolink:NamedThing nitrotoluene catabolic process The chemical reactions and pathways resulting in the breakdown of nitrotoluene, any methylbenzene molecule with NO2 group(s) attached. tmpzr1t_l9r_go_relaxed.owl nitrotoluene degradation|nitrotoluene breakdown|nitrotoluene catabolism biological_process owl:Class GO:0110137 biolink:NamedThing regulation of imaginal disc-derived leg joint morphogenesis Any process that modulates the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis, the process in which the anatomical structure of the imaginal disc-derived leg joint is generated and organized. tmpzr1t_l9r_go_relaxed.owl kmv 2019-02-12T15:31:25Z biological_process owl:Class GO:1905794 biolink:NamedThing response to puromycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a puromycin stimulus. tmpzr1t_l9r_go_relaxed.owl response to 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine sl 2017-01-10T21:13:18Z biological_process owl:Class GO:0014074 biolink:NamedThing response to purine-containing compound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus. tmpzr1t_l9r_go_relaxed.owl response to purine biological_process owl:Class GO:0033668 biolink:NamedThing negative regulation by symbiont of host apoptotic process Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of programmed cell death in the host, where programmed cell death proceeds by apoptosis. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation by organism of host apoptotic programmed cell death|negative regulation by symbiont of host apoptosis|inhibition by organism of host apoptotic programmed cell death|down regulation by organism of host apoptotic programmed cell death|down-regulation by organism of host apoptotic programmed cell death Note that term is to be used to annotate gene products in the symbiont. To annotate host gene products, consider the biological process term 'negative regulation of apoptosis ; GO:0043066'. biological_process owl:Class GO:0090524 biolink:NamedThing cytochrome-b5 reductase activity, acting on NADH Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5). tmpzr1t_l9r_go_relaxed.owl cytochrome b5 reductase activity tb 2013-01-11T12:21:50Z molecular_function owl:Class GO:0004128 biolink:NamedThing cytochrome-b5 reductase activity, acting on NAD(P)H Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5). tmpzr1t_l9r_go_relaxed.owl NADH-cytochrome-b5 reductase activity|NADH-ferricytochrome b5 oxidoreductase activity|NADH-cytochrome b5 reductase activity|reduced nicotinamide adeninedinucleotide-cytochrome b5 reductase activity|NADH 5alpha-reductase activity|cytochrome b5 reductase activity|NADH:ferricytochrome-b5 oxidoreductase activity|dihydronicotinamide adenine dinucleotide-cytochrome b5 reductase activity Reactome:R-HSA-198824|MetaCyc:CYTOCHROME-B5-REDUCTASE-RXN|EC:1.6.2.2|RHEA:46680|Reactome:R-HSA-6806831 molecular_function owl:Class GO:0002889 biolink:NamedThing regulation of immunoglobulin mediated immune response Any process that modulates the frequency, rate, or extent of an immunoglobulin mediated immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900341 biolink:NamedThing positive regulation of methane biosynthetic process from formic acid Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from formic acid. tmpzr1t_l9r_go_relaxed.owl up-regulation of methane biosynthetic process from formic acid|upregulation of methane biosynthetic process from formic acid|activation of methane biosynthetic process from formic acid|up regulation of methane biosynthetic process from formic acid tt 2012-04-06T02:05:11Z biological_process owl:Class GO:0000416 biolink:NamedThing positive regulation of histone H3-K36 methylation Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3. tmpzr1t_l9r_go_relaxed.owl upregulation of histone H3-K36 methylation|activation of histone H3-K36 methylation|stimulation of histone H3-K36 methylation|up regulation of histone H3-K36 methylation|up-regulation of histone H3-K36 methylation biological_process owl:Class GO:0061986 biolink:NamedThing negative regulation of transcription by glucose Any process involving glucose that decreases the frequency, rate or extent or transcription. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T17:39:14Z biological_process owl:Class GO:0046015 biolink:NamedThing regulation of transcription by glucose Any process involving glucose that modulates the frequency, rate or extent or transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033510 biolink:NamedThing luteolin metabolic process The chemical reactions and pathways involving luteolin, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one. tmpzr1t_l9r_go_relaxed.owl luteolin metabolism biological_process owl:Class GO:0043185 biolink:NamedThing vascular endothelial growth factor receptor 3 binding Binding to a vascular endothelial growth factor receptor 3. tmpzr1t_l9r_go_relaxed.owl VEGF receptor 3 binding|fms-like-tyrosine kinase (Flt)-4 binding|VEGFR 3 binding molecular_function owl:Class GO:0005172 biolink:NamedThing vascular endothelial growth factor receptor binding Binding to a vascular endothelial growth factor receptor. tmpzr1t_l9r_go_relaxed.owl VEGFR binding|vascular endothelial growth factor|VEGF receptor binding|vascular endothelial growth factor receptor ligand molecular_function owl:Class GO:0102456 biolink:NamedThing cyanidin 3-O-glucoside 5-O-glucosyltransferase (sinapoyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-sinapoyl-beta-D-glucose <=> cyanin betaine + trans-sinapate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13967 molecular_function owl:Class GO:1904297 biolink:NamedThing positive regulation of osmolarity-sensing cation channel activity Any process that activates or increases the frequency, rate or extent of osmolarity-sensing cation channel activity. tmpzr1t_l9r_go_relaxed.owl activation of osmolarity-sensing cation channel activity|up regulation of osmolarity-sensing cation channel activity|upregulation of osmolarity-sensing cation channel activity|up-regulation of osmolarity-sensing cation channel activity sl 2015-06-09T17:35:52Z biological_process owl:Class GO:0102506 biolink:NamedThing cyanidin 3-O-glucoside 5-O-glucosyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-feruloyl-beta-D-glucose = cyanin betaine + ferulate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14432|EC:2.4.1.299 molecular_function owl:Class GO:0005471 biolink:NamedThing ATP:ADP antiporter activity Catalysis of the reaction: ATP(out) + ADP(in) = ATP(in) + ADP(out). tmpzr1t_l9r_go_relaxed.owl ATP/ADP exchange|ADP/ATP carrier protein|adenine nucleotide translocase|ADP/ATP translocase|ATP/ADP exchanger GO:0005349 molecular_function owl:Class GO:1902213 biolink:NamedThing positive regulation of prolactin signaling pathway Any process that activates or increases the frequency, rate or extent of prolactin signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of prolactin-mediated signaling pathway|upregulation of PRL signaling pathway|activation of prolactin-mediated signaling pathway|up regulation of PRL signaling pathway|up regulation of prolactin signaling pathway|upregulation of prolactin signaling pathway|positive regulation of PRL signaling pathway|up regulation of prolactin-mediated signaling pathway|up-regulation of PRL signaling pathway|upregulation of prolactin-mediated signaling pathway|positive regulation of prolactin-mediated signaling pathway|activation of prolactin signaling pathway|activation of PRL signaling pathway|up-regulation of prolactin signaling pathway lb 2013-06-12T10:10:18Z biological_process owl:Class GO:1902211 biolink:NamedThing regulation of prolactin signaling pathway Any process that modulates the frequency, rate or extent of prolactin signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of prolactin-mediated signaling pathway|regulation of PRL signaling pathway lb 2013-06-12T10:10:07Z biological_process owl:Class GO:0035349 biolink:NamedThing coenzyme A transmembrane transport The process in which coenzyme A is transported across a membrane. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl coenzyme A membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:44:33Z biological_process owl:Class GO:0015880 biolink:NamedThing coenzyme A transport The directed movement of coenzyme A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045919 biolink:NamedThing positive regulation of cytolysis Any process that activates or increases the frequency, rate or extent of cytolysis. tmpzr1t_l9r_go_relaxed.owl stimulation of cytolysis|up regulation of cytolysis|upregulation of cytolysis|up-regulation of cytolysis|activation of cytolysis biological_process owl:Class GO:0071827 biolink:NamedThing plasma lipoprotein particle organization A protein-lipid complex subunit organization process that results in the formation, disassembly, or alteration of a plasma lipoprotein particle. A plasma lipoprotein particle is a spherical particle with a hydrophobic core of triglycerides and/or cholesterol esters, surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins. tmpzr1t_l9r_go_relaxed.owl plasma lipoprotein particle organisation mah 2010-09-08T10:32:26Z biological_process owl:Class GO:1900684 biolink:NamedThing negative regulation of fumonisin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of fumonisin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of fumonisin biosynthesis|downregulation of fumonisin biosynthetic process|inhibition of fumonisin synthesis|down regulation of fumonisin synthesis|downregulation of fumonisin biosynthesis|down-regulation of fumonisin synthesis|down-regulation of fumonisin biosynthesis|negative regulation of fumonisin formation|inhibition of fumonisin formation|negative regulation of fumonisin anabolism|inhibition of fumonisin anabolism|down regulation of fumonisin biosynthesis|downregulation of fumonisin synthesis|inhibition of fumonisin biosynthetic process|down-regulation of fumonisin formation|downregulation of fumonisin anabolism|down regulation of fumonisin formation|down-regulation of fumonisin biosynthetic process|down regulation of fumonisin anabolism|downregulation of fumonisin formation|inhibition of fumonisin biosynthesis|down-regulation of fumonisin anabolism|down regulation of fumonisin biosynthetic process|negative regulation of fumonisin synthesis di 2012-05-22T04:29:59Z biological_process owl:Class GO:1990330 biolink:NamedThing IscS-IscU complex A heterotetrameric protein complex involved in the sulfur transfer during iron-sulfur cluster assembly and in the modification of tRNA wobble positions. In E. coli it consisting of a central IscS dimer with the IscU protomers attached to one of the IscS units each via a disulfide (-SSH) group. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-17T10:08:19Z cellular_component owl:Class GO:0019810 biolink:NamedThing putrescine binding Binding to putrescine, 1,4-diaminobutane, the polyamine formed by decarboxylation of ornithine and the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019808 biolink:NamedThing polyamine binding Binding to a polyamine, an organic compound containing two or more amino groups. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015731 biolink:NamedThing 3-hydroxyphenyl propanoate transport The directed movement of 3-hydroxyphenyl propanoate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenyl propionate transport biological_process owl:Class GO:0098997 biolink:NamedThing fusion of virus membrane with host outer membrane Fusion of a viral membrane with the host cell outer membrane during viral entry. tmpzr1t_l9r_go_relaxed.owl fusion of viral membrane with host outer membrane|viral envelope fusion with host outer membrane|viral penetration via membrane fusion|viral envelope fusion|viral-cell fusion molecule activity VZ:3941 biological_process owl:Class GO:0019064 biolink:NamedThing fusion of virus membrane with host plasma membrane Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral envelope fusion|viral-cell fusion molecule activity|viral envelope fusion with host membrane|viral envelope fusion with host cell membrane|viral entry into host cell via membrane fusion with the plasma membrane|viral penetration via membrane fusion|viral envelope fusion with host plasma membrane VZ:987 GO:0075706 biological_process owl:Class GO:0061787 biolink:NamedThing peptidoglycan cross-bridge peptide endopeptidase activity A peptidoglycan endopeptidase activity that acts on a peptidoglycan cross-bridge. tmpzr1t_l9r_go_relaxed.owl lysostaphin activity dph 2016-09-07T16:54:02Z molecular_function owl:Class GO:0061785 biolink:NamedThing peptidoglycan endopeptidase activity An endopeptidase activity that uses peptidoglycan as a substrate. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-07T16:30:48Z molecular_function owl:Class GO:1904513 biolink:NamedThing negative regulation of initiation of premeiotic DNA replication Any process that stops, prevents or reduces the frequency, rate or extent of initiation of premeiotic DNA replication. tmpzr1t_l9r_go_relaxed.owl inhibition of initiation of premeiotic DNA synthesis|negative regulation of initiation of meiotic DNA synthesis|negative regulation of meiotic DNA replication initiation|down regulation of meiotic DNA replication initiation|down-regulation of meiotic DNA replication initiation|downregulation of meiotic DNA replication initiation|down-regulation of initiation of premeiotic DNA replication|down regulation of premeiotic DNA replication initiation|down regulation of initiation of premeiotic DNA synthesis|downregulation of initiation of premeiotic DNA synthesis|inhibition of initiation of premeiotic DNA replication|inhibition of initiation of meiotic DNA synthesis|downregulation of initiation of meiotic DNA synthesis|down-regulation of premeiotic DNA replication initiation|down-regulation of initiation of meiotic DNA synthesis|down regulation of initiation of meiotic DNA synthesis|inhibition of meiotic DNA replication initiation|inhibition of premeiotic DNA replication initiation|negative regulation of initiation of premeiotic DNA synthesis|negative regulation of premeiotic DNA replication initiation|down-regulation of initiation of premeiotic DNA synthesis|downregulation of initiation of premeiotic DNA replication|downregulation of premeiotic DNA replication initiation|down regulation of initiation of premeiotic DNA replication mah 2015-07-28T12:59:23Z biological_process owl:Class GO:0051770 biolink:NamedThing positive regulation of nitric-oxide synthase biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric oxide synthase enzyme. tmpzr1t_l9r_go_relaxed.owl up regulation of nitric-oxide synthase biosynthetic process|up-regulation of nitric-oxide synthase 2 biosynthetic process|upregulation of nitric-oxide synthase biosynthetic process|up regulation of nitric-oxide synthase 2 biosynthetic process|stimulation of nitric-oxide synthase 2 biosynthetic process|upregulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of NOS2 synthase biosynthesis|positive regulation of NOS biosynthesis|positive regulation of NOS2 synthase biosynthetic process|positive regulation of NOS biosynthetic process|positive regulation of nitric-oxide synthase (type 2) biosynthetic process|activation of nitric-oxide synthase biosynthetic process|stimulation of nitric-oxide synthase biosynthetic process|positive regulation of nitric-oxide synthase 2 biosynthetic process|up-regulation of nitric-oxide synthase biosynthetic process|positive regulation of nitric-oxide synthase (type 2) biosynthesis|activation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase (type II) biosynthetic process|positive regulation of NO synthase biosynthetic process|positive regulation of nitric-oxide synthase (type II) biosynthesis|positive regulation of NO synthase biosynthesis GO:0051773 biological_process owl:Class GO:0106166 biolink:NamedThing spindle pole body-nuclear membrane anchor activity The binding activity of a molecule that brings together a mitotic spindle pole body and the nuclear membrane, in order to maintain specific membrane location of the spindle pole body. tmpzr1t_l9r_go_relaxed.owl nuclear membrane-spindle pole body anchor activity|spindle pole body nuclear membrane anchor activity https://github.com/geneontology/go-ontology/issues/19119|https://github.com/geneontology/go-ontology/issues/20606 hjd 2019-01-18T15:57:42Z molecular_function owl:Class GO:0140475 biolink:NamedThing spindle pole body anchor activity The binding activity of a protein that brings together the spindle pole body and one or more other molecules, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl pg 2020-06-23T15:54:56Z molecular_function owl:Class GO:1905955 biolink:NamedThing negative regulation of endothelial tube morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of endothelial tube morphogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of endothelial tube morphogenesis|inhibition of endothelial tube morphogenesis|downregulation of endothelial tube morphogenesis|down-regulation of endothelial tube morphogenesis rph 2017-02-21T15:17:31Z biological_process owl:Class GO:1905331 biolink:NamedThing negative regulation of morphogenesis of an epithelium Any process that stops, prevents or reduces the frequency, rate or extent of morphogenesis of an epithelium. tmpzr1t_l9r_go_relaxed.owl negative regulation of epithelium morphogenesis|inhibition of morphogenesis of an epithelium|down-regulation of epithelium morphogenesis|down regulation of morphogenesis of an epithelium|inhibition of epithelium morphogenesis|down regulation of epithelium morphogenesis|downregulation of morphogenesis of an epithelium|down-regulation of morphogenesis of an epithelium|downregulation of epithelium morphogenesis An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-07-22T07:13:57Z biological_process owl:Class GO:0050881 biolink:NamedThing musculoskeletal movement The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050905 biolink:NamedThing neuromuscular process Any process pertaining to the functions of the nervous and muscular systems of an organism. tmpzr1t_l9r_go_relaxed.owl neuromuscular physiological process|neuromotor process biological_process owl:Class GO:0047211 biolink:NamedThing alpha-1,4-glucan-protein synthase (ADP-forming) activity Catalysis of the reaction: ADP-D-glucose + protein = alpha-D-glucosyl-protein + ADP. tmpzr1t_l9r_go_relaxed.owl 1,4alpha-glucan-protein synthase (ADP-forming) activity|ADP-glucose:protein 4-alpha-D-glucosyltransferase activity|ADPglucose:protein glucosyltransferase activity|ADPglucose:protein 4-alpha-D-glucosyltransferase activity|adenosine diphosphoglucose-protein glucosyltransferase activity EC:2.4.1.113|MetaCyc:2.4.1.113-RXN molecular_function owl:Class GO:0098627 biolink:NamedThing protein arginine phosphatase activity Catalysis of the reaction: protein arginine phosphate + H2O = protein arginine + phosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21517 RHEA:43380|EC:3.9.1.2 Made part of peptidyl-N-phospho-arginine phosphatase activity on the assumption that arginine phosphorylation in proteins occurs via an N link. dos 2014-04-17T17:57:39Z molecular_function owl:Class GO:0004721 biolink:NamedThing phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. tmpzr1t_l9r_go_relaxed.owl protein phosphatase-1 activity|phosphoprotein phosphohydrolase activity|protein phosphatase-2C activity|protein phosphatase-2B activity|protein phosphatase-2A activity|protein phosphatase activity Reactome:R-HSA-174110|Reactome:R-HSA-170153|MetaCyc:3.1.3.16-RXN|Reactome:R-HSA-2529015|Reactome:R-HSA-170161|Reactome:R-HSA-174124|Reactome:R-HSA-112383|Reactome:R-HSA-170158|Reactome:R-HSA-1363276|Reactome:R-HSA-69199|Reactome:R-HSA-167072|Reactome:R-HSA-9636684|Reactome:R-HSA-178178|Reactome:R-HSA-1363274|Reactome:R-HSA-113503 molecular_function owl:Class GO:0050067 biolink:NamedThing lysine 2-monooxygenase activity Catalysis of the reaction: L-lysine + O(2) = 5-aminopentanamide + CO(2) + H(2)O. tmpzr1t_l9r_go_relaxed.owl lysine monooxygenase activity|L-lysine:oxygen 2-oxidoreductase (decarboxylating)|L-lysine-2-monooxygenase activity|lysine oxygenase activity EC:1.13.12.2|MetaCyc:LYSINE-2-MONOOXYGENASE-RXN|RHEA:14601|KEGG_REACTION:R00449 molecular_function owl:Class GO:0010897 biolink:NamedThing negative regulation of triglyceride catabolic process Any process that decreases the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. tmpzr1t_l9r_go_relaxed.owl negative regulation of triacylglycerol catabolic process biological_process owl:Class GO:0050995 biolink:NamedThing negative regulation of lipid catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids. tmpzr1t_l9r_go_relaxed.owl down-regulation of lipid catabolic process|downregulation of lipid catabolic process|negative regulation of lipid degradation|negative regulation of lipid catabolism|negative regulation of lipid breakdown|inhibition of lipid catabolic process|down regulation of lipid catabolic process biological_process owl:Class GO:0090079 biolink:NamedThing translation regulator activity, nucleic acid binding Any selective and non-covalent interaction with a nucleic acid involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-19T10:19:05Z molecular_function owl:Class GO:1900628 biolink:NamedThing positive regulation of arugosin biosynthetic process Any process that activates or increases the frequency, rate or extent of arugosin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of arugosin biosynthesis|up-regulation of arugosin formation|positive regulation of arugosin synthesis|upregulation of arugosin formation|up-regulation of arugosin anabolism|up regulation of arugosin biosynthetic process|upregulation of arugosin biosynthetic process|up-regulation of arugosin biosynthesis|positive regulation of arugosin biosynthesis|upregulation of arugosin biosynthesis|activation of arugosin anabolism|upregulation of arugosin synthesis|upregulation of arugosin anabolism|up regulation of arugosin formation|activation of arugosin formation|activation of arugosin biosynthetic process|up-regulation of arugosin biosynthetic process|activation of arugosin synthesis|up-regulation of arugosin synthesis|up regulation of arugosin synthesis|positive regulation of arugosin anabolism|positive regulation of arugosin formation|activation of arugosin biosynthesis|up regulation of arugosin anabolism di 2012-05-21T05:48:11Z biological_process owl:Class GO:1900626 biolink:NamedThing regulation of arugosin biosynthetic process Any process that modulates the frequency, rate or extent of arugosin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of arugosin synthesis|regulation of arugosin formation|regulation of arugosin biosynthesis|regulation of arugosin anabolism di 2012-05-21T05:47:39Z biological_process owl:Class GO:1900889 biolink:NamedThing positive regulation of pentadecane biosynthetic process Any process that activates or increases the frequency, rate or extent of pentadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of pentadecane anabolism|activation of pentadecane synthesis|positive regulation of pentadecane synthesis|up regulation of pentadecane synthesis|upregulation of pentadecane formation|positive regulation of pentadecane formation|up regulation of pentadecane biosynthesis|up-regulation of pentadecane biosynthesis|activation of pentadecane formation|up-regulation of pentadecane formation|positive regulation of pentadecane biosynthesis|activation of pentadecane anabolism|positive regulation of pentadecane anabolism|up-regulation of pentadecane synthesis|upregulation of pentadecane biosynthesis|up regulation of pentadecane biosynthetic process|upregulation of pentadecane anabolism|up-regulation of pentadecane anabolism|activation of pentadecane biosynthesis|activation of pentadecane biosynthetic process|upregulation of pentadecane biosynthetic process|up regulation of pentadecane formation|up-regulation of pentadecane biosynthetic process|upregulation of pentadecane synthesis tt 2012-06-13T03:04:04Z biological_process owl:Class GO:1902126 biolink:NamedThing (+)-pinoresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (+)-pinoresinol synthesis|(+)-pinoresinol anabolism|(+)-pinoresinol formation|(+)-pinoresinol biosynthesis ms 2013-05-21T08:49:28Z biological_process owl:Class GO:0017181 biolink:NamedThing peptidyl-diphthine catabolic process The chemical reactions and pathways resulting in the breakdown of peptidyl-diphthine, a modified histidine residue. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthine breakdown|peptidyl-diphthine degradation|peptidyl-diphthine catabolism biological_process owl:Class GO:0008903 biolink:NamedThing hydroxypyruvate isomerase activity Catalysis of the reaction: 3-hydroxypyruvate = 2-hydroxy-3-oxopropanoate. tmpzr1t_l9r_go_relaxed.owl hydroxypyruvate ketol-isomerase activity|hydroxypyruvate aldose-ketose-isomerase activity MetaCyc:RXN0-305|RHEA:11952|KEGG_REACTION:R01394|EC:5.3.1.22 molecular_function owl:Class GO:0016861 biolink:NamedThing intramolecular oxidoreductase activity, interconverting aldoses and ketoses Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor, which is an aldose or a ketose, are the same molecule, and no oxidized product appears. tmpzr1t_l9r_go_relaxed.owl intramolecular isomerase activity, interconverting aldoses and ketoses EC:5.3.1.- molecular_function owl:Class GO:0047595 biolink:NamedThing 6-hydroxynicotinate reductase activity Catalysis of the reaction: 1,4,5,6-tetrahydro-6-oxonicotinate + oxidized ferredoxin = 6-hydroxynicotinate + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 6-hydroxynicotinic reductase activity|1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase activity|HNA reductase activity|6-oxotetrahydro-nicotinate dehydrogenase activity|6-oxotetrahydronicotinate dehydrogenase activity|6-oxo-1,4,5,6-tetrahydronicotinate:ferredoxin oxidoreductase activity RHEA:17225|MetaCyc:6-HYDROXYNICOTINATE-REDUCTASE-RXN|EC:1.3.7.1 molecular_function owl:Class GO:0016636 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-CH group of donors, iron-sulphur protein as acceptor EC:1.3.7.- molecular_function owl:Class GO:0031499 biolink:NamedThing TRAMP complex A multiprotein complex having distributive polyadenylation activity of a variety of RNA substrates including hypomodified and incorrectly folded tRNAs, pre-snRNAs, pre-snoRNAs, incorrectly spliced or processed pre-mRNAs, cryptic unstable transcripts (CUTs), pre-rRNAs and rRNA fragments released as part of rRNA processing. In S. cerevisiae, the complex consists of either Pap2 (also known as Trf4) or Trf5, Air1 or Air2, and Mtr4, and is involved in RNA 3'-end processing and in RNA surveillance and quality control. tmpzr1t_l9r_go_relaxed.owl Trf4 poly(A) polymerase complex|TRAMP5 complex|Trf4p-Air2p-Mtr4p polyadenylation complex|Trf4 complex|TRAMP4 complex Wikipedia:TRAMP_complex cellular_component owl:Class GO:0110053 biolink:NamedThing regulation of actin filament organization Any process that modulates the frequency, rate or extent of actin filament organization. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-20T19:52:57Z biological_process owl:Class GO:0050536 biolink:NamedThing (S)-N-acetyl-1-phenylethylamine hydrolase activity Catalysis of the reaction: N-acetylphenylethylamine + H(2)O = acetate + phenylethylamine. tmpzr1t_l9r_go_relaxed.owl (S)-N-acetyl-1-phenylethylamine amidohydrolase activity|(S)-N-acetylphenylethylamine:H2O hydrolase activity EC:3.5.1.85|KEGG_REACTION:R07301|RHEA:23952|MetaCyc:3.5.1.85-RXN molecular_function owl:Class GO:0060517 biolink:NamedThing epithelial cell proliferation involved in prostatic bud elongation The multiplication of epithelial cells, contributing to the expansion of the primary prostatic bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900903 biolink:NamedThing negative regulation of hexadecanal biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of hexadecanal biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of hexadecanal biosynthesis|down-regulation of hexadecanal anabolism|down-regulation of palmitaldehyde biosynthetic process|down regulation of hexadecanal synthesis|inhibition of hexadecanal synthesis|down-regulation of hexadecanal biosynthetic process|negative regulation of palmitaldehyde biosynthetic process|negative regulation of hexadecanal formation|down regulation of hexadecanal biosynthesis|down-regulation of palmitaldehyde biosynthesis|negative regulation of hexadecanal biosynthesis|downregulation of hexadecanal biosynthetic process|down regulation of hexadecanal anabolism|downregulation of palmitaldehyde biosynthetic process|negative regulation of palmitaldehyde biosynthesis|inhibition of hexadecanal anabolism|downregulation of palmitaldehyde biosynthesis|inhibition of palmitaldehyde biosynthetic process|negative regulation of hexadecanal anabolism|down-regulation of hexadecanal biosynthesis|inhibition of hexadecanal formation|downregulation of hexadecanal biosynthesis|negative regulation of hexadecanal synthesis|downregulation of hexadecanal formation|down regulation of palmitaldehyde biosynthetic process|down regulation of palmitaldehyde biosynthesis|down regulation of hexadecanal biosynthetic process|downregulation of hexadecanal synthesis|down regulation of hexadecanal formation|down-regulation of hexadecanal formation|inhibition of palmitaldehyde biosynthesis|inhibition of hexadecanal biosynthetic process|downregulation of hexadecanal anabolism|down-regulation of hexadecanal synthesis tt 2012-06-13T03:33:34Z biological_process owl:Class GO:1900906 biolink:NamedThing negative regulation of hexadecanal metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of hexadecanal metabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of hexadecanal metabolism|down-regulation of hexadecanal metabolic process|negative regulation of hexadecanal metabolism|down-regulation of hexadecanal metabolism|down regulation of hexadecanal metabolism|down regulation of hexadecanal metabolic process|inhibition of hexadecanal metabolism|inhibition of hexadecanal metabolic process|downregulation of hexadecanal metabolic process tt 2012-06-13T03:35:54Z biological_process owl:Class GO:1902322 biolink:NamedThing regulation of methyl-branched fatty acid biosynthetic process Any process that modulates the frequency, rate or extent of methyl-branched fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of methyl-branched fatty acid formation|regulation of methyl-branched fatty acid synthesis|regulation of methyl-branched fatty acid biosynthesis|regulation of methyl-branched fatty acid anabolism kmv 2013-07-24T20:15:15Z biological_process owl:Class GO:0070634 biolink:NamedThing transepithelial ammonium transport The directed movement of ammonium ions from one side of an epithelium to the other. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-06T03:34:43Z biological_process owl:Class GO:0070633 biolink:NamedThing transepithelial transport The directed movement of a substance from one side of an epithelium to the other. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-06T03:31:02Z biological_process owl:Class GO:0031430 biolink:NamedThing M band The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines. tmpzr1t_l9r_go_relaxed.owl M line|midline|mesophragma|M disc Wikipedia:Sarcomere#bands cellular_component owl:Class GO:0042789 biolink:NamedThing mRNA transcription by RNA polymerase II The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl mRNA transcription from Pol II promoter|mRNA transcription from RNA polymerase II promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0009299 biolink:NamedThing mRNA transcription The cellular synthesis of messenger RNA (mRNA) from a DNA template. tmpzr1t_l9r_go_relaxed.owl mRNA synthesis|cellular mRNA transcription|mRNA biosynthesis|mRNA biosynthetic process GO:0061023 biological_process owl:Class GO:0019637 biolink:NamedThing organophosphate metabolic process The chemical reactions and pathways involving organophosphates, any phosphate-containing organic compound. tmpzr1t_l9r_go_relaxed.owl organophosphate metabolism biological_process owl:Class GO:0016894 biolink:NamedThing endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks to yield 3'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl endoribonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters|3'-endonuclease activity EC:3.1.31.- Note that this activity can catalyze cleavage of DNA or RNA. molecular_function owl:Class GO:0046584 biolink:NamedThing enniatin metabolic process The chemical reactions and pathways involving enniatins, any of various cyclodepsipeptide antibiotics from Fusarium species that function as ionophores. tmpzr1t_l9r_go_relaxed.owl enniatin metabolism biological_process owl:Class GO:0031621 biolink:NamedThing negative regulation of fever generation Any process that stops, prevents, or reduces the rate or extent of fever generation. tmpzr1t_l9r_go_relaxed.owl inhibition of fever|downregulation of fever|down regulation of fever|down-regulation of fever|negative regulation of pyrexia biological_process owl:Class GO:0031651 biolink:NamedThing negative regulation of heat generation Any process that stops, prevents, or reduces the rate or extent of heat generation. tmpzr1t_l9r_go_relaxed.owl inhibition of heat generation|downregulation of heat generation|down regulation of heat generation|down-regulation of heat generation biological_process owl:Class GO:0046938 biolink:NamedThing phytochelatin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. tmpzr1t_l9r_go_relaxed.owl phytochelatin synthesis|phytochelatin biosynthesis|phytochelatin anabolism|cadystin biosynthetic process|phytochelatin formation biological_process owl:Class GO:0046937 biolink:NamedThing phytochelatin metabolic process The chemical reactions and pathways involving phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. tmpzr1t_l9r_go_relaxed.owl phytochelatin metabolism|cadystin metabolism|cadystin metabolic process biological_process owl:Class GO:0050996 biolink:NamedThing positive regulation of lipid catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids. tmpzr1t_l9r_go_relaxed.owl stimulation of lipid catabolic process|upregulation of lipid catabolic process|up-regulation of lipid catabolic process|activation of lipid catabolic process|positive regulation of lipid breakdown|up regulation of lipid catabolic process|positive regulation of lipid catabolism|positive regulation of lipid degradation biological_process owl:Class GO:0010108 biolink:NamedThing detection of glutamine The series of events in which a glutamine stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl glutamine sensing|glutamine detection|glutamine perception biological_process owl:Class GO:2000289 biolink:NamedThing regulation of photoreceptor cell axon guidance Any process that modulates the frequency, rate or extent of photoreceptor cell axon guidance. tmpzr1t_l9r_go_relaxed.owl regulation of photoreceptor cell axon pathfinding mah 2010-12-17T10:04:35Z biological_process owl:Class GO:0046177 biolink:NamedThing D-gluconate catabolic process The chemical reactions and pathways resulting in the breakdown of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl D-gluconate degradation|D-gluconate breakdown|D-gluconate catabolism MetaCyc:GLUCONSUPER-PWY biological_process owl:Class GO:0140270 biolink:NamedThing gluconate import across plasma membrane The directed movement of gluconate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-10-01T08:47:35Z biological_process owl:Class GO:0030410 biolink:NamedThing nicotianamine synthase activity Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-L-methionine 3-amino-3-carboxypropyltransferase activity MetaCyc:2.5.1.43-RXN|RHEA:16481|EC:2.5.1.43|KEGG_REACTION:R00075 molecular_function owl:Class GO:0061474 biolink:NamedThing phagolysosome membrane The lipid bilayer surrounding a phagolysosome. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-06T12:26:18Z cellular_component owl:Class GO:0030670 biolink:NamedThing phagocytic vesicle membrane The lipid bilayer surrounding a phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl phagosome membrane cellular_component owl:Class GO:0097291 biolink:NamedThing renal phosphate ion absorption A renal system process in which phosphate ions are taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl renal phosphate absorption pr 2012-04-25T03:34:48Z biological_process owl:Class GO:0070293 biolink:NamedThing renal absorption A renal system process in which water, ions, glucose and proteins are taken up from the collecting ducts, glomerulus and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures (e.g. protein absorption is observed in nephrocytes in Drosophila, see PMID:23264686). tmpzr1t_l9r_go_relaxed.owl renal reabsorption|nephron absorption biological_process owl:Class GO:1904332 biolink:NamedThing negative regulation of error-prone translesion synthesis Any process that stops, prevents or reduces the frequency, rate or extent of error-prone translesion synthesis. tmpzr1t_l9r_go_relaxed.owl inhibition of mutagenic PRR|down-regulation of mutagenic postreplication DNA repair|inhibition of error-prone translesion synthesis|down regulation of mutagenic PRR|inhibition of mutagenic postreplication DNA repair|down-regulation of error-prone translesion synthesis|downregulation of mutagenic PRR|negative regulation of mutagenic postreplication DNA repair|down-regulation of error-prone postreplication DNA repair|inhibition of error-prone postreplication DNA repair|down-regulation of mutagenic PRR|negative regulation of mutagenic PRR|downregulation of error-prone translesion synthesis|downregulation of error-prone postreplication DNA repair|downregulation of mutagenic postreplication DNA repair|down regulation of mutagenic postreplication DNA repair|down regulation of error-prone postreplication DNA repair|negative regulation of error-prone postreplication DNA repair|down regulation of error-prone translesion synthesis kmv 2015-06-11T16:24:53Z biological_process owl:Class GO:0080187 biolink:NamedThing floral organ senescence An organ senescence that has as a participant a floral organ. tmpzr1t_l9r_go_relaxed.owl Includes senescence of petals, sepals, anthers, and any other plant organ that is part of a flower. Floral organ senescence may follow pollination. In some flowers, the organs of the corolla abscise before they senesce. dhl 2012-03-09T04:08:50Z biological_process owl:Class GO:0090552 biolink:NamedThing unicellular trichome apex A cell projection part that is the apical most portion of a unicellular trichome. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-25T11:56:56Z cellular_component owl:Class GO:2000393 biolink:NamedThing negative regulation of lamellipodium morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of lamellipodium morphogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of lamellipodium organization mah 2011-02-22T11:19:25Z biological_process owl:Class GO:0014723 biolink:NamedThing regulation of skeletal muscle contraction by modulation of calcium ion sensitivity of myofibril Any process that modulates the frequency, rate or extent of skeletal muscle contraction by changing calcium ion binding affinity of the myofibril. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion sensitivity of myofibril involved in skeletal muscle contraction biological_process owl:Class GO:0014722 biolink:NamedThing regulation of skeletal muscle contraction by calcium ion signaling Any process that modulates the frequency, rate or extent of skeletal muscle contraction by changing the calcium ion signals that trigger contraction. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal muscle contraction by calcium ion signalling biological_process owl:Class GO:0030895 biolink:NamedThing apolipoprotein B mRNA editing enzyme complex Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP). tmpzr1t_l9r_go_relaxed.owl APOBEC|apoB mRNA editing enzyme complex cellular_component owl:Class GO:0035582 biolink:NamedThing sequestering of BMP in extracellular matrix Confining a bone morphogenetic protein (BMP) to the extracellular matrix (ECM), such that it is separated from other components of the signaling pathway, including its cell surface receptor. Bone morphogenetic proteins (BMPs) are secreted as homodimers, non-covalently associated with N-terminal pro-peptides, and are targeted to the extracellular matrix through interaction with matrix proteins. tmpzr1t_l9r_go_relaxed.owl negative regulation of bone morphogenetic protein signaling pathway by extracellular matrix sequestering of bone morphogenetic protein|negative regulation of BMP signalling pathway by extracellular matrix sequestering of BMP|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|BMP sequestration in the ECM Confining BMP in the extracellular matrix may be achieved by binding BMP directly, or by binding to members of a BMP-containing complex. bf 2010-10-12T03:12:45Z biological_process owl:Class GO:0030514 biolink:NamedThing negative regulation of BMP signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the BMP signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of bone morphogenetic protein signalling pathway|negative regulation of decapentaplegic receptor signaling pathway|inhibition of BMP signaling pathway|negative regulation of BMP signalling pathway|negative regulation of BMP receptor signaling pathway|negative regulation of decapentaplegic receptor signalling pathway|downregulation of BMP signaling pathway|down regulation of BMP signaling pathway|down-regulation of BMP signaling pathway|negative regulation of bone morphogenetic protein signaling pathway|negative regulation of decapentaplegic signaling pathway tb 2009-11-13T10:51:30Z GO:0090099 biological_process owl:Class GO:2000263 biolink:NamedThing regulation of blood coagulation, extrinsic pathway Any process that modulates the frequency, rate or extent of blood coagulation, extrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:44:35Z biological_process owl:Class GO:0050858 biolink:NamedThing negative regulation of antigen receptor-mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell. tmpzr1t_l9r_go_relaxed.owl down regulation of antigen receptor-mediated signaling pathway|down-regulation of antigen receptor-mediated signaling pathway|downregulation of antigen receptor-mediated signaling pathway|inhibition of antigen receptor-mediated signaling pathway|negative regulation of antigen receptor mediated signalling pathway biological_process owl:Class GO:1901141 biolink:NamedThing regulation of lignin biosynthetic process Any process that modulates the frequency, rate or extent of lignin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of lignin formation|regulation of lignin biosynthesis|regulation of lignin synthesis|regulation of lignin anabolism tb 2012-07-12T09:53:09Z biological_process owl:Class GO:0009298 biolink:NamedThing GDP-mannose biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-mannose biosynthesis|GDP-mannose synthesis|GDP-mannose formation|GDP-mannose anabolism biological_process owl:Class GO:0051692 biolink:NamedThing cellular oligosaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular oligosaccharide catabolism|cellular oligosaccharide degradation|cellular oligosaccharide breakdown biological_process owl:Class GO:0034232 biolink:NamedThing ascospore wall chitin catabolic process The chemical reactions and pathways resulting in the breakdown of ascospore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall chitin degradation|ascospore wall chitin catabolism|ascospore wall chitin breakdown biological_process owl:Class GO:0044347 biolink:NamedThing cell wall polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of cell wall polysaccharides. tmpzr1t_l9r_go_relaxed.owl cell wall polysaccharide breakdown jl 2011-07-28T01:24:57Z biological_process owl:Class GO:0102811 biolink:NamedThing geraniol 10-hydroxylase activity Catalysis of the reaction: geraniol + O2 + NADPH + H+ <=> (6E)-8-hydroxygeraniol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.83|MetaCyc:RXN-8197|RHEA:32495 molecular_function owl:Class GO:1904605 biolink:NamedThing positive regulation of advanced glycation end-product receptor activity Any process that activates or increases the frequency, rate or extent of advanced glycation end-product receptor activity. tmpzr1t_l9r_go_relaxed.owl upregulation of advanced glycation end-product receptor activity|activation of RAGE activity|upregulation of RAGE activity|up-regulation of RAGE activity|up regulation of advanced glycation end-product receptor activity|up regulation of AGE receptor activity|activation of AGE receptor activity|positive regulation of AGE receptor activity|positive regulation of RAGE activity|up regulation of RAGE activity|up-regulation of advanced glycation end-product receptor activity|upregulation of AGE receptor activity|activation of advanced glycation end-product receptor activity|up-regulation of AGE receptor activity krc 2015-08-26T16:25:02Z biological_process owl:Class GO:1901822 biolink:NamedThing delta-carotene metabolic process The chemical reactions and pathways involving delta-carotene. tmpzr1t_l9r_go_relaxed.owl delta-carotene metabolism yaf 2013-01-22T11:17:29Z biological_process owl:Class GO:0102355 biolink:NamedThing 2-oxo-3-(5-oxofuran-2-ylidene)propanoate lactonase activity Catalysis of the reaction: 2-oxo-3-(5-oxofuran-2-ylidene)propanoate + H2O <=> 3-maleylpyruvate + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.91|RHEA:33967|MetaCyc:RXN-13371 molecular_function owl:Class GO:0031063 biolink:NamedThing regulation of histone deacetylation Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000175 biolink:NamedThing negative regulation of pro-T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of pro-T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of pro-T lymphocyte differentiation mah 2010-10-11T10:24:33Z biological_process owl:Class GO:2000174 biolink:NamedThing regulation of pro-T cell differentiation Any process that modulates the frequency, rate or extent of pro-T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of pro-T lymphocyte differentiation mah 2010-10-11T10:24:30Z biological_process owl:Class GO:0006121 biolink:NamedThing mitochondrial electron transport, succinate to ubiquinone The transfer of electrons from succinate to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex II. tmpzr1t_l9r_go_relaxed.owl complex II (succinate to ubiquinone)|mitochondrial electron transport, succinate to coenzyme Q|oxidative phosphorylation, succinate to ubiquinone biological_process owl:Class GO:0048793 biolink:NamedThing pronephros development The process whose specific outcome is the progression of the pronephros over time, from its formation to the mature structure. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life. tmpzr1t_l9r_go_relaxed.owl pronephric kidney development biological_process owl:Class GO:0015012 biolink:NamedThing heparan sulfate proteoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan, a glycosaminoglycan with repeat unit consisting of alternating alpha-(1->4)-linked hexuronic acid and glucosamine residues; the former are a mixture of sulfated and nonsulfated D-glucuronic acid and L-iduronic acid; the L-iduronic acid is either sulfated or acetylated on its amino group as well as being sulfated on one of its hydroxyl groups; heparan sulfate chains are covalently linked to peptidyl-serine by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylosyl to serine residues. tmpzr1t_l9r_go_relaxed.owl heparan sulphate proteoglycan biosynthesis|heparan sulfate proteoglycan synthesis|heparan sulfate proteoglycan formation|heparan sulfate proteoglycan biosynthesis|heparin proteoglycan biosynthetic process|heparan sulfate proteoglycan anabolism|heparan sulphate proteoglycan biosynthetic process RESID:AA0210 biological_process owl:Class GO:0098916 biolink:NamedThing anterograde trans-synaptic signaling Cell-cell signaling from pre to post-synapse, across the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015498 biolink:NamedThing pantothenate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: pantothenate(out) + Na+(out) = pantothenate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097247 biolink:NamedThing epigallocatechin 3-gallate binding Binding to epigallocatechin 3-gallate, a compound that is a gallic acid ester of a catechin. tmpzr1t_l9r_go_relaxed.owl EGCG binding|catechin gallate binding pr 2012-02-17T03:55:05Z molecular_function owl:Class GO:1901093 biolink:NamedThing regulation of protein homotetramerization Any process that modulates the frequency, rate or extent of protein homotetramerization. tmpzr1t_l9r_go_relaxed.owl regulation of protein homotetramer biosynthetic process|regulation of protein homotetramer assembly|regulation of protein homotetramer biosynthesis|regulation of protein homotetramer formation pm 2012-07-06T12:57:33Z biological_process owl:Class GO:1901090 biolink:NamedThing regulation of protein tetramerization Any process that modulates the frequency, rate or extent of protein tetramerization. tmpzr1t_l9r_go_relaxed.owl regulation of protein tetramer biosynthesis|regulation of protein tetramer biosynthetic process|regulation of protein tetramer formation|regulation of protein tetramer assembly pm 2012-07-06T12:51:00Z biological_process owl:Class GO:0050337 biolink:NamedThing thiosulfate-thiol sulfurtransferase activity Catalysis of the reaction: thiosulfate + 2 glutathione = sulfite + glutathione disulfide + sulfide. tmpzr1t_l9r_go_relaxed.owl sulfane sulfurtransferase activity|thiosulfate:thiol sulfurtransferase activity|thiosulphate-thiol sulphurtransferase activity|glutathione-dependent thiosulfate reductase activity|sulfane reductase activity Reactome:R-HSA-1655879|RHEA:14505|EC:2.8.1.3|MetaCyc:THIOSULFATE--THIOL-SULFURTRANSFERASE-RXN molecular_function owl:Class GO:0038188 biolink:NamedThing cholecystokinin signaling pathway The series of molecular signals generated as a consequence of cholecystokinin binding to a receptor on the surface of the cell, and proceeding with the activated receptor transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCK signaling|cholecystokinin receptor signaling pathway Wikipedia:Cholecystokinin bf 2013-07-01T13:05:46Z biological_process owl:Class GO:0072331 biolink:NamedThing signal transduction by p53 class mediator An intracellular signaling process that is induced by the cell cycle regulator phosphoprotein p53 or an equivalent protein. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-03T01:32:59Z biological_process owl:Class GO:0033130 biolink:NamedThing acetylcholine receptor binding Binding to an acetylcholine receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904663 biolink:NamedThing regulation of N-terminal peptidyl-methionine acetylation Any process that modulates the frequency, rate or extent of N-terminal peptidyl-methionine acetylation. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-07T19:18:49Z biological_process owl:Class GO:1900708 biolink:NamedThing negative regulation of tensidol A biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of tensidol A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of tensidol A anabolism|down regulation of tensidol A formation|negative regulation of tensidol A biosynthesis|downregulation of tensidol A synthesis|inhibition of tensidol A biosynthesis|down-regulation of tensidol A biosynthetic process|down-regulation of tensidol A biosynthesis|down-regulation of tensidol A synthesis|negative regulation of tensidol A synthesis|downregulation of tensidol A biosynthesis|inhibition of tensidol A synthesis|downregulation of tensidol A formation|inhibition of tensidol A biosynthetic process|downregulation of tensidol A anabolism|inhibition of tensidol A formation|inhibition of tensidol A anabolism|negative regulation of tensidol A formation|down-regulation of tensidol A formation|downregulation of tensidol A biosynthetic process|down regulation of tensidol A biosynthetic process|negative regulation of tensidol A anabolism|down-regulation of tensidol A anabolism|down regulation of tensidol A synthesis|down regulation of tensidol A biosynthesis di 2012-05-22T05:02:04Z biological_process owl:Class GO:0034168 biolink:NamedThing negative regulation of toll-like receptor 10 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 10 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR10 signaling pathway|negative regulation of toll-like receptor 10 signalling pathway biological_process owl:Class GO:1990806 biolink:NamedThing ligand-gated ion channel signaling pathway A series of molecular signals initiated by activation of a ligand-gated ion channel on the surface of a cell. The pathway begins with binding of an extracellular ligand to a ligand-gated ion channel and ends with a molecular function that directly regulates a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ligand-gated ion channel signalling pathway bhm 2015-07-20T12:09:56Z biological_process owl:Class GO:0004629 biolink:NamedThing phospholipase C activity Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate. tmpzr1t_l9r_go_relaxed.owl lecithinase C activity|phosphatidase C|lipophosphodiesterase C Reactome:R-HSA-114689|Reactome:R-HSA-114688|Reactome:R-HSA-5362553|Reactome:R-HSA-398193|MetaCyc:PHOSPHOLIPASE-C-RXN|EC:3.1.4.3|Reactome:R-HSA-1112666|Reactome:R-HSA-399998 GO:0042298 molecular_function owl:Class GO:0008081 biolink:NamedThing phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. tmpzr1t_l9r_go_relaxed.owl phosphodiesterase Reactome:R-HSA-5693578|EC:3.1.4.- GO:0004434|GO:0016792 molecular_function owl:Class GO:0002682 biolink:NamedThing regulation of immune system process Any process that modulates the frequency, rate, or extent of an immune system process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102494 biolink:NamedThing GA20 2,3-desaturase activity Catalysis of the reaction: gibberellin A20 + O2 + a reduced electron acceptor <=> gibberellin A5 + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14317 molecular_function owl:Class GO:0048073 biolink:NamedThing regulation of eye pigmentation Any process that modulates the frequency, rate or extent of establishment of a pattern of pigment in the eye of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901799 biolink:NamedThing negative regulation of proteasomal protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of proteasomal protein catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of proteasomal protein catabolic process|inhibition of proteasome-mediated protein catabolic process|negative regulation of proteasome-mediated protein catabolism|down regulation of proteasomal protein catabolic process|downregulation of proteasome-mediated protein catabolism|down regulation of proteasome-mediated protein catabolism|negative regulation of proteasome-mediated protein catabolic process|downregulation of proteasome-mediated protein catabolic process|downregulation of proteasomal protein catabolic process|down regulation of proteasome-mediated protein catabolic process|inhibition of proteasomal protein catabolic process|down-regulation of proteasome-mediated protein catabolism|inhibition of proteasome-mediated protein catabolism|down-regulation of proteasome-mediated protein catabolic process rl 2013-01-21T20:10:54Z biological_process owl:Class GO:0034955 biolink:NamedThing 2,3-dihydroxydiphenyl ether dioxygenase activity Catalysis of the reaction: 2,3-dihydroxydiphenyl ether + O2 + H2O = 2-hydroxymuconate + phenol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1451 molecular_function owl:Class GO:0016600 biolink:NamedThing flotillin complex A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'caveola ; GO:0005901'. cellular_component owl:Class GO:0010992 biolink:NamedThing ubiquitin recycling Any process involved in the maintenance of an internal steady state of ubiquitin monomers and free ubiquitin chains at the level of the cell by recycling ubiquitin from proteasome-bound ubiquitinated intermediates. tmpzr1t_l9r_go_relaxed.owl ubiquitin homeostasis|regulation of ubiquitin homeostasis tb 2009-06-03T11:36:55Z GO:0010993 biological_process owl:Class GO:1900081 biolink:NamedThing regulation of arginine catabolic process Any process that modulates the frequency, rate or extent of arginine catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of arginine catabolism|regulation of arginine degradation|regulation of arginine breakdown pr 2012-02-01T04:04:39Z biological_process owl:Class GO:0000821 biolink:NamedThing regulation of arginine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl regulation of arginine metabolism biological_process owl:Class GO:0004923 biolink:NamedThing leukemia inhibitory factor receptor activity Combining with leukemia inhibitory factor (LIF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl leukemia inhibitory factor receptor beta-protein activity|LIF receptor activity GO:0004899 molecular_function owl:Class GO:0004897 biolink:NamedThing ciliary neurotrophic factor receptor activity Combining with ciliary neurotrophic factor (CNTF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl gp130|CNTF receptor activity molecular_function owl:Class GO:0090713 biolink:NamedThing immunological memory process Any process of the immune system that can contribute to the formation of immunological memory or an immune response based upon activation of immunological memory. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:20:30Z biological_process owl:Class GO:0060954 biolink:NamedThing neural crest-derived cardiac glial cell development The process aimed at the progression of a neural crest-derived cardiac glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:14:15Z biological_process owl:Class GO:0060952 biolink:NamedThing cardiac glial cell development The process aimed at the progression of a cardiac glial cell over time, from its formation to the fully functional mature cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:09:24Z biological_process owl:Class GO:0007196 biolink:NamedThing adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled glutamate receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl metabotropic glutamate receptor, adenylate cyclase inhibiting pathway|inhibition of adenylate cyclase activity by G-protein-coupled glutamate receptor signaling pathway|metabotropic glutamate receptor, adenylyl cyclase inhibiting pathway|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signalling pathway|adenylate cyclase-inhibiting G-protein coupled glutamate receptor signaling pathway biological_process owl:Class GO:0007193 biolink:NamedThing adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds through inhibition of adenylyl cyclase activity and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl G protein signalling, adenylate cyclase inhibiting pathway|G-protein signaling, adenylate cyclase inhibiting pathway|G-protein signalling, adenylate cyclase inhibiting pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|G protein signaling, adenylyl cyclase inhibiting pathway|G protein signalling, adenylyl cyclase inhibiting pathway|G-protein signaling, adenylyl cyclase inhibiting pathway|G protein signaling, adenylate cyclase inhibiting pathway|adenylate cyclase-inhibiting GPCR signaling pathway|GPCR signaling pathway via inhibition of adenylate cyclase activity|G-protein signalling, adenylyl cyclase inhibiting pathway This term is intended to cover steps in a GPCR signaling pathway both upstream and downstream of adenylate-cyclase inhibition. biological_process owl:Class GO:0048319 biolink:NamedThing axial mesoderm morphogenesis The process in which the anatomical structures of the axial mesoderm are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017198 biolink:NamedThing N-terminal peptidyl-serine acetylation The acetylation of the N-terminal serine of proteins to form the derivative N-acetyl-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0051 biological_process owl:Class GO:0006474 biolink:NamedThing N-terminal protein amino acid acetylation The acetylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl N(alpha)-terminal acetylation biological_process owl:Class GO:1904130 biolink:NamedThing regulation of convergent extension involved in neural plate elongation Any process that modulates the frequency, rate or extent of convergent extension involved in neural plate elongation. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:13:21Z biological_process owl:Class GO:0000402 biolink:NamedThing crossed form four-way junction DNA binding Binding to a DNA segment containing the crossed form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The crossed form of a four-way junction cannot be diagrammed without any of the strands crossing over, and instead contains a single crossover between two of the strands. tmpzr1t_l9r_go_relaxed.owl crossed form Holliday junction binding molecular_function owl:Class GO:0000400 biolink:NamedThing four-way junction DNA binding Binding to a DNA segment containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. tmpzr1t_l9r_go_relaxed.owl Holliday junction binding|forked DNA binding molecular_function owl:Class GO:1990198 biolink:NamedThing ModE complex A dimeric protein complex containing two ModE subunits. Binds directly to DNA to regulate transcription, and is involved in (positively and negatively) regulating various aspects of molybdenum metabolism. tmpzr1t_l9r_go_relaxed.owl ModE dimer bhm 2013-10-01T07:28:52Z cellular_component owl:Class GO:0005667 biolink:NamedThing transcription regulator complex A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. tmpzr1t_l9r_go_relaxed.owl nuclear transcription factor complex|cytoplasmic transcription factor complex|transcription factor complex jl 2013-08-28T12:11:37Z GO:0044797|GO:0044798 cellular_component owl:Class GO:2000536 biolink:NamedThing negative regulation of entry of bacterium into host cell Any process that stops, prevents or reduces the frequency, rate or extent of entry of bacterium into host cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of invasion of bacteria into host cell|negative regulation of bacterial entry into host cell ebc 2011-03-28T09:52:23Z biological_process owl:Class GO:1901824 biolink:NamedThing delta-carotene biosynthetic process The chemical reactions and pathways resulting in the formation of delta-carotene. tmpzr1t_l9r_go_relaxed.owl delta-carotene anabolism|delta-carotene formation|delta-carotene biosynthesis|delta-carotene synthesis yaf 2013-01-22T11:17:38Z biological_process owl:Class GO:0016120 biolink:NamedThing carotene biosynthetic process The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids. tmpzr1t_l9r_go_relaxed.owl carotene biosynthesis|carotene anabolism|carotene synthesis|carotene formation biological_process owl:Class GO:0010956 biolink:NamedThing negative regulation of calcidiol 1-monooxygenase activity Any process that decreases the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is the catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-06T11:21:34Z biological_process owl:Class GO:0044484 biolink:NamedThing envenomation resulting in fibrinolysis in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with fibrinolysis, a process that solubilizes fibrin, chiefly by the proteolytic action of plasmin, in the bloodstream of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-26T03:26:33Z biological_process owl:Class GO:0044483 biolink:NamedThing envenomation resulting in impairment of hemostasis in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the inhibition of the process of hemostasis - the stopping of bleeding or the arrest of the circulation to an organ or part - in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in negative regulation of hemostasis in other organism|envenomation, impairing hemostasis in other organism jl 2012-01-19T03:15:56Z biological_process owl:Class GO:1905205 biolink:NamedThing positive regulation of connective tissue replacement Any process that activates or increases the frequency, rate or extent of connective tissue replacement. tmpzr1t_l9r_go_relaxed.owl upregulation of connective tissue replacement|up regulation of connective tissue replacement|up-regulation of connective tissue replacement|activation of connective tissue replacement bc 2016-05-17T09:54:35Z biological_process owl:Class GO:0089703 biolink:NamedThing L-aspartate transmembrane export from vacuole The directed movement of L-aspartate out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070778 biolink:NamedThing L-aspartate transmembrane transport The directed movement of L-aspartate across a membrane. tmpzr1t_l9r_go_relaxed.owl L-aspartate transport mah 2009-07-02T01:46:31Z GO:0089712 biological_process owl:Class GO:0090421 biolink:NamedThing embryonic meristem initiation Initiation of a region of tissue in a plant embryo that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation. tmpzr1t_l9r_go_relaxed.owl tb 2012-04-13T02:52:34Z biological_process owl:Class GO:0010014 biolink:NamedThing meristem initiation Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900923 biolink:NamedThing regulation of glycine import across plasma membrane Any process that modulates the frequency, rate or extent of glycine import into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of glycine import al 2012-06-13T07:40:11Z biological_process owl:Class GO:0061679 biolink:NamedThing Entner-Doudoroff pathway through gluconate The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate. tmpzr1t_l9r_go_relaxed.owl gluconate pathway dph 2015-01-16T15:41:22Z biological_process owl:Class GO:0061678 biolink:NamedThing Entner-Doudoroff pathway A cellular carbohydrate catabolic process that converts a carbohydrate to pyruvate and either glyceraldehyde or glyceraldehyde-3 phosphate by dehydration and aldol cleavage via a gluconate or 6-phosphogluconate intermediate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:Entner-Doudoroff-Pathways dph 2015-01-16T15:28:25Z biological_process owl:Class GO:2000525 biolink:NamedThing positive regulation of T cell costimulation Any process that activates or increases the frequency, rate or extent of T cell costimulation. tmpzr1t_l9r_go_relaxed.owl positive regulation of T lymphocyte costimulation|positive regulation of T-cell costimulation|positive regulation of T-lymphocyte costimulation|positive regulation of T cell co-stimulation|positive regulation of T-cell co-stimulation ebc 2011-03-23T10:23:36Z biological_process owl:Class GO:0050870 biolink:NamedThing positive regulation of T cell activation Any process that activates or increases the frequency, rate or extent of T cell activation. tmpzr1t_l9r_go_relaxed.owl up regulation of T cell activation|positive regulation of T-cell activation|stimulation of T cell activation|upregulation of T cell activation|positive regulation of T-lymphocyte activation|up-regulation of T cell activation|activation of T cell activation|positive regulation of T lymphocyte activation biological_process owl:Class GO:0042188 biolink:NamedThing 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane catabolic process The chemical reactions and pathways resulting in the breakdown of 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT), a chlorinated broad spectrum contact insecticide. tmpzr1t_l9r_go_relaxed.owl DDT catabolic process|1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane degradation|1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane breakdown|1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane catabolism|DDT catabolism biological_process owl:Class GO:0018977 biolink:NamedThing 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolic process The chemical reactions and pathways involving 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT), a chlorinated broad spectrum contact insecticide. tmpzr1t_l9r_go_relaxed.owl DDT metabolism|1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism|DDT metabolic process UM-BBD_pathwayID:ddt biological_process owl:Class GO:0075324 biolink:NamedThing negative regulation of oomycete sporangium development Any process that stops, prevents, or reduces the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086017 biolink:NamedThing Purkinje myocyte action potential An action potential that occurs in a Purkinje myocyte. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:58:56Z biological_process owl:Class GO:0008443 biolink:NamedThing phosphofructokinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a phosphofructose substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102036 biolink:NamedThing methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase activity Catalysis of the reaction: a tetrahydrofolate + a [methyl-Co(III) corrinoid Fe-S protein] <=> an N5-methyl-tetrahydrofolate + a [Co(I) corrinoid Fe-S protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:METHCOCLTH-RXN|EC:2.1.1.258|RHEA:45200 molecular_function owl:Class GO:1903002 biolink:NamedThing positive regulation of lipid transport across blood-brain barrier Any process that activates or increases the frequency, rate or extent of lipid transport across blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl activation of lipid transport across blood brain barrier|upregulation of lipid transport across blood brain barrier|up regulation of lipid transport across blood brain barrier|positive regulation of lipid transport across blood brain barrier|up-regulation of lipid transport across blood brain barrier sjp 2014-05-09T09:30:16Z biological_process owl:Class GO:0102859 biolink:NamedThing 1-18:1-2-18:2-phosphatidylcholine desaturase activity (SN2-18:3 forming) Catalysis of the reaction: 1-18:1-2-18:2-phosphatidylcholine + O2 + a reduced electron acceptor = 1-18:1-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8326|RHEA:46404|EC:1.14.19.25 molecular_function owl:Class GO:0071337 biolink:NamedThing negative regulation of hair follicle cell proliferation Any process that stops, prevents or reduces the rate or extent of hair follicle cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of hair follicle cell proliferation|downregulation of hair follicle cell proliferation|down-regulation of hair follicle cell proliferation|down regulation of hair follicle cell proliferation mah 2009-12-11T10:59:20Z biological_process owl:Class GO:0042898 biolink:NamedThing fosmidomycin transmembrane transporter activity Enables the transfer of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl fosmidomycin transporter activity molecular_function owl:Class GO:0048816 biolink:NamedThing ocellus morphogenesis The process in which the anatomical structures of the ocellus are generated and organized. The ocellus is a simple visual organ of insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090596 biolink:NamedThing sensory organ morphogenesis Morphogenesis of a sensory organ. A sensory organ is defined as a tissue or set of tissues that work together to receive and transmit signals from external or internal stimuli. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-22T13:23:20Z biological_process owl:Class GO:0043599 biolink:NamedThing nuclear DNA replication factor C complex A nuclear complex of five polypeptides that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase delta or epsilon. In Saccharomyces and several other species, the subunits are known as Rfc1p-Rfc5p, although subunit names do not necessarily correspond between different species. tmpzr1t_l9r_go_relaxed.owl nuclear RFC cellular_component owl:Class GO:1902249 biolink:NamedThing IMP binding Binding to IMP, inosine monophosphate. tmpzr1t_l9r_go_relaxed.owl mah 2013-06-20T16:20:35Z molecular_function owl:Class GO:0048339 biolink:NamedThing paraxial mesoderm development The process whose specific outcome is the progression of the paraxial mesoderm over time, from its formation to the mature structure. The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903838 biolink:NamedThing negative regulation of mRNA 3'-UTR binding Any process that stops, prevents or reduces the frequency, rate or extent of mRNA 3'-UTR binding. tmpzr1t_l9r_go_relaxed.owl inhibition of mRNA 3'-UTR binding|down-regulation of mRNA 3' UTR binding|down regulation of mRNA 3' UTR binding|downregulation of mRNA 3'-UTR binding|negative regulation of mRNA 3' UTR binding|down regulation of mRNA 3'-UTR binding|down-regulation of mRNA 3'-UTR binding|inhibition of mRNA 3' UTR binding|downregulation of mRNA 3' UTR binding als 2015-01-22T11:54:08Z biological_process owl:Class GO:0019187 biolink:NamedThing beta-1,4-mannosyltransferase activity Catalysis of the transfer of a mannose residue to an oligosaccharide, forming a beta-(1->4) linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000030 biolink:NamedThing mannosyltransferase activity Catalysis of the transfer of a mannosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-162797|Reactome:R-HSA-446198|Reactome:R-HSA-162830|Reactome:R-HSA-4720497 molecular_function owl:Class GO:0009889 biolink:NamedThing regulation of biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. tmpzr1t_l9r_go_relaxed.owl regulation of synthesis|regulation of biosynthesis|regulation of formation|regulation of anabolism biological_process owl:Class GO:0090340 biolink:NamedThing positive regulation of secretion of lysosomal enzymes Any process that increases the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:35:57Z biological_process owl:Class GO:1900658 biolink:NamedThing regulation of emericellamide biosynthetic process Any process that modulates the frequency, rate or extent of emericellamide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of emericellamide formation|regulation of emericellamide biosynthesis|regulation of emericellamide synthesis|regulation of emericellamide anabolism di 2012-05-22T04:10:19Z biological_process owl:Class GO:0032620 biolink:NamedThing interleukin-17 production The appearance of any member of the interleukin-17 family of cytokines due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Cytotoxic T-lymphocyte-associated antigen 8 production|interleukin-17 secretion|interleukin-17 biosynthetic process|CTLA-8 production|IL-17 production GO:0042235|GO:0072615 biological_process owl:Class GO:0010067 biolink:NamedThing procambium histogenesis The formation of the primary meristem or meristematic tissue that gives rise to the primary vascular tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010065 biolink:NamedThing primary meristem tissue development The process whose specific outcome is the progression of the primary meristem over time, from formation to the mature structure, as it occurs during plant embryogenesis. The primary meristem tissue is the protoderm, ground meristem and procambium. tmpzr1t_l9r_go_relaxed.owl primary meristem histogenesis biological_process owl:Class GO:0102344 biolink:NamedThing 3-hydroxy-behenoyl-CoA dehydratase activity Catalysis of the reaction: (R)-3-hydroxybehenoyl-CoA <=> trans-2-docosenoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.134|MetaCyc:RXN-13303 molecular_function owl:Class GO:1902818 biolink:NamedThing ethyl acetate metabolic process The chemical reactions and pathways involving ethyl acetate. tmpzr1t_l9r_go_relaxed.owl ethyl acetate metabolism|ethyl ethanoate metabolic process tt 2014-03-30T20:26:47Z biological_process owl:Class GO:1900619 biolink:NamedThing acetate ester metabolic process The chemical reactions and pathways involving an acetate ester, any carboxylic ester where the carboxylic acid component is acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate ester metabolism|acetyl ester metabolic process|acetyl ester metabolism bf 2012-05-16T12:29:51Z biological_process owl:Class GO:1990159 biolink:NamedThing DnaB-DnaC-DnaT-PriA-PriC complex A protein-DNA complex consisting of the helicase loading complex DnaB-DnaC, replication restart proteins DnaT, PriA and PriC, and associated DNA. Involved in the restart of DNA replication after a stalled replication fork has been repaired. tmpzr1t_l9r_go_relaxed.owl phi-X174-type preprimosome|DnaB-DnaC-DnaT-PriA-PriC preprimosome bhm 2013-08-02T11:58:16Z cellular_component owl:Class GO:1990099 biolink:NamedThing pre-primosome complex Any of the protein-DNA complexes that contain a DNA helicase and associated protein(s) at the origin of replication, and build up to assembling the core primosome. The associated protein(s) chaperone the helicase to the DNA, and assembly of the pre-primosome is essential for the initiation or restart of replication. Pre-primosome complexes lack a primase component. tmpzr1t_l9r_go_relaxed.owl pre-replication complex|prereplication complex|preprimosome|pre-primosome|pre-priming complex|preprimosome complex bhm 2013-05-14T10:53:42Z cellular_component owl:Class GO:0061762 biolink:NamedThing CAMKK-AMPK signaling cascade A series of molecular signals in which calmodulin-dependent protein kinase activity enabled by a CAMKK directly activates an AMPK. The cascade begins with calmodulin binding calcium which in turn binds CAMKK enabling its calmodulin-dependent protein kinase activity. The cascade ends with AMP-activated protein kinase activity. tmpzr1t_l9r_go_relaxed.owl stress-activated AMP-activated protein kinase signaling cascade dph 2016-04-14T12:59:31Z biological_process owl:Class GO:0099004 biolink:NamedThing calmodulin dependent kinase signaling pathway Any signal transduction pathway involving calmodulin dependent kinase activity. tmpzr1t_l9r_go_relaxed.owl CAMK signaling pathway biological_process owl:Class GO:0072690 biolink:NamedThing single-celled organism vegetative growth phase A phase of population growth during which single celled organisms reproduce by budding, fission, or other asexual methods. tmpzr1t_l9r_go_relaxed.owl vegetative growth of a single-celled organism|stationary phase https://github.com/geneontology/go-ontology/issues/18275 Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). mah 2011-08-19T12:05:19Z GO:0062178 biological_process owl:Class GO:0044848 biolink:NamedThing biological phase A distinct period or stage in a biological process or cycle. tmpzr1t_l9r_go_relaxed.owl Note that phases are is_a disjoint from other biological processes. happens_during relationships can operate between phases and other biological processes e.g. DNA replication happens_during S phase. jl 2014-07-16T13:12:40Z biological_process owl:Class GO:1900263 biolink:NamedThing negative regulation of DNA-directed DNA polymerase activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA-directed DNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of duplicase|negative regulation of kappa DNA polymerase activity|down-regulation of eta DNA polymerase activity|down-regulation of DNA-directed DNA polymerase activity|inhibition of iota DNA polymerase activity|downregulation of Tca DNA polymerase|down regulation of lambda DNA polymerase activity|inhibition of alpha DNA polymerase activity|inhibition of DNA polymerase I|down-regulation of DNA polymerase gamma|down-regulation of nu DNA polymerase activity|down regulation of DNA polymerase III|down-regulation of DNA polymerase alpha|downregulation of theta DNA polymerase activity|negative regulation of alpha DNA polymerase activity|down-regulation of DNA polymerase III|down regulation of epsilon DNA polymerase activity|down-regulation of mu DNA polymerase activity|down regulation of DNA replicase activity|inhibition of DNA polymerase III|downregulation of mu DNA polymerase activity|negative regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|down regulation of DNA polymerase gamma|down-regulation of DNA replicase activity|inhibition of sigma DNA polymerase activity|inhibition of DNA polymerase II|negative regulation of Taq DNA polymerase|down regulation of DNA nucleotidyltransferase (DNA-directed) activity|negative regulation of deoxyribonucleic acid duplicase activity|inhibition of DNA polymerase alpha|inhibition of duplicase|downregulation of alpha DNA polymerase activity|downregulation of sigma DNA polymerase activity|down regulation of eta DNA polymerase activity|down regulation of gamma DNA-directed DNA polymerase activity|inhibition of DNA polymerase V activity|negative regulation of zeta DNA polymerase activity|inhibition of DNA-directed DNA polymerase activity|down-regulation of Taq Pol I|down-regulation of duplicase|inhibition of Tca DNA polymerase|down regulation of deoxyribonucleic acid duplicase activity|down-regulation of lambda DNA polymerase activity|inhibition of Klenow fragment|down regulation of sigma DNA polymerase activity|down regulation of sequenase|negative regulation of beta DNA polymerase activity|downregulation of nu DNA polymerase activity|inhibition of zeta DNA polymerase activity|downregulation of iota DNA polymerase activity|inhibition of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|inhibition of DNA polymerase beta|inhibition of delta DNA polymerase activity|down-regulation of deoxyribonucleic acid duplicase activity|down regulation of Tca DNA polymerase|inhibition of nu DNA polymerase activity|downregulation of DNA polymerase V activity|inhibition of theta DNA polymerase activity|down-regulation of sequenase|down-regulation of kappa DNA polymerase activity|inhibition of DNA replicase activity|negative regulation of DNA nucleotidyltransferase (DNA-directed) activity|negative regulation of gamma DNA-directed DNA polymerase activity|downregulation of epsilon DNA polymerase activity|negative regulation of deoxyribonucleic duplicase activity|down-regulation of Klenow fragment|down regulation of Taq DNA polymerase|negative regulation of nu DNA polymerase activity|down-regulation of deoxyribonucleic duplicase activity|negative regulation of sigma DNA polymerase activity|negative regulation of lambda DNA polymerase activity|negative regulation of DNA-dependent DNA polymerase activity|downregulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|negative regulation of deoxyribonucleic polymerase I|inhibition of Taq Pol I|negative regulation of DNA polymerase gamma|down-regulation of Taq DNA polymerase|negative regulation of mu DNA polymerase activity|downregulation of DNA polymerase II|inhibition of epsilon DNA polymerase activity|down regulation of mu DNA polymerase activity|downregulation of DNA polymerase beta|inhibition of beta DNA polymerase activity|down regulation of DNA polymerase II|down-regulation of DNA duplicase activity|inhibition of DNA duplicase activity|down regulation of Klenow fragment|downregulation of DNA polymerase gamma|downregulation of beta DNA polymerase activity|negative regulation of sequenase|down-regulation of delta DNA polymerase activity|down regulation of zeta DNA polymerase activity|negative regulation of iota DNA polymerase activity|inhibition of lambda DNA polymerase activity|negative regulation of DNA polymerase II|inhibition of mu DNA polymerase activity|downregulation of lambda DNA polymerase activity|downregulation of DNA-directed DNA polymerase activity|inhibition of eta DNA polymerase activity|downregulation of zeta DNA polymerase activity|down regulation of beta DNA polymerase activity|down regulation of Taq Pol I|down-regulation of DNA polymerase V activity|negative regulation of DNA replicase activity|downregulation of DNA nucleotidyltransferase (DNA-directed) activity|downregulation of Taq DNA polymerase|down regulation of DNA polymerase beta|down-regulation of epsilon DNA polymerase activity|down regulation of nu DNA polymerase activity|down-regulation of DNA polymerase beta|negative regulation of DNA polymerase I|negative regulation of delta DNA polymerase activity|negative regulation of duplicase|inhibition of gamma DNA-directed DNA polymerase activity|inhibition of DNA-dependent DNA polymerase activity|downregulation of DNA replicase activity|down-regulation of gamma DNA-directed DNA polymerase activity|down-regulation of beta DNA polymerase activity|inhibition of DNA nucleotidyltransferase (DNA-directed) activity|negative regulation of DNA polymerase V activity|negative regulation of Taq Pol I|down regulation of DNA-dependent DNA polymerase activity|down regulation of DNA-directed DNA polymerase activity|downregulation of Klenow fragment|down regulation of DNA polymerase I|downregulation of delta DNA polymerase activity|down-regulation of deoxyribonucleic polymerase I|downregulation of sequenase|inhibition of kappa DNA polymerase activity|negative regulation of DNA polymerase III|down-regulation of iota DNA polymerase activity|down regulation of theta DNA polymerase activity|down regulation of DNA polymerase alpha|negative regulation of eta DNA polymerase activity|downregulation of DNA-dependent DNA polymerase activity|down regulation of DNA duplicase activity|downregulation of deoxyribonucleic acid duplicase activity|down regulation of iota DNA polymerase activity|down-regulation of DNA-dependent DNA polymerase activity|downregulation of duplicase|negative regulation of theta DNA polymerase activity|inhibition of sequenase|inhibition of deoxyribonucleic acid duplicase activity|downregulation of deoxyribonucleic polymerase I|down-regulation of sigma DNA polymerase activity|down-regulation of alpha DNA polymerase activity|negative regulation of DNA polymerase alpha|negative regulation of epsilon DNA polymerase activity|down-regulation of DNA nucleotidyltransferase (DNA-directed) activity|down-regulation of DNA polymerase I|down-regulation of theta DNA polymerase activity|downregulation of DNA polymerase III|negative regulation of DNA polymerase beta|down-regulation of Tca DNA polymerase|inhibition of deoxyribonucleic duplicase activity|inhibition of DNA polymerase gamma|downregulation of kappa DNA polymerase activity|downregulation of deoxyribonucleic duplicase activity|downregulation of Taq Pol I|negative regulation of Tca DNA polymerase|downregulation of eta DNA polymerase activity|inhibition of deoxyribonucleic polymerase I|down regulation of DNA polymerase V activity|down regulation of delta DNA polymerase activity|down regulation of deoxyribonucleic duplicase activity|negative regulation of Klenow fragment|downregulation of DNA polymerase alpha|down-regulation of DNA polymerase II|inhibition of Taq DNA polymerase|downregulation of gamma DNA-directed DNA polymerase activity|down regulation of deoxyribonucleic polymerase I|downregulation of DNA polymerase I|down-regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|down-regulation of zeta DNA polymerase activity|negative regulation of DNA duplicase activity|down regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|downregulation of DNA duplicase activity|down regulation of alpha DNA polymerase activity|down regulation of kappa DNA polymerase activity tb 2012-04-03T11:07:18Z biological_process owl:Class GO:1900262 biolink:NamedThing regulation of DNA-directed DNA polymerase activity Any process that modulates the frequency, rate or extent of DNA-directed DNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl regulation of iota DNA polymerase activity|regulation of deoxyribonucleic acid duplicase activity|regulation of DNA duplicase activity|regulation of gamma DNA-directed DNA polymerase activity|regulation of DNA polymerase I|regulation of beta DNA polymerase activity|regulation of lambda DNA polymerase activity|regulation of alpha DNA polymerase activity|regulation of eta DNA polymerase activity|regulation of DNA-dependent DNA polymerase activity|regulation of DNA polymerase beta|regulation of DNA polymerase II|regulation of Tca DNA polymerase|regulation of sequenase|regulation of zeta DNA polymerase activity|regulation of Klenow fragment|regulation of delta DNA polymerase activity|regulation of duplicase|regulation of DNA replicase activity|regulation of DNA polymerase III|regulation of mu DNA polymerase activity|regulation of theta DNA polymerase activity|regulation of kappa DNA polymerase activity|regulation of DNA polymerase gamma|regulation of Taq DNA polymerase|regulation of Taq Pol I|regulation of deoxyribonucleic duplicase activity|regulation of epsilon DNA polymerase activity|regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|regulation of DNA nucleotidyltransferase (DNA-directed) activity|regulation of nu DNA polymerase activity|regulation of deoxyribonucleic polymerase I|regulation of sigma DNA polymerase activity|regulation of DNA polymerase alpha|regulation of DNA polymerase V activity tb 2012-04-03T11:07:08Z biological_process owl:Class GO:0036463 biolink:NamedThing TRAIL receptor activity Combining with the ligand TRAIL (tumor necrosis factor-related apoptosis-inducing ligand) and transmitting the signal from one side of the plasma membrane to the other to initiate apoptotic cell death. tmpzr1t_l9r_go_relaxed.owl tumor necrosis factor-related apoptosis-inducing ligand receptor bf 2014-06-11T09:20:30Z molecular_function owl:Class GO:0005035 biolink:NamedThing death receptor activity Combining with an extracellular messenger (called a death ligand), and transmitting the signal from one side of the plasma membrane to the other to initiate apoptotic or necrotic cell death. tmpzr1t_l9r_go_relaxed.owl apoptosis-activating receptor activity molecular_function owl:Class GO:0032243 biolink:NamedThing negative regulation of nucleoside transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of nucleoside transport|downregulation of nucleoside transport|down regulation of nucleoside transport|inhibition of nucleoside transport biological_process owl:Class GO:0032240 biolink:NamedThing negative regulation of nucleobase-containing compound transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|down-regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|down regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|downregulation of nucleobase, nucleoside, nucleotide and nucleic acid transport|inhibition of nucleobase, nucleoside, nucleotide and nucleic acid transport biological_process owl:Class GO:0030418 biolink:NamedThing nicotianamine biosynthetic process The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl nicotianamine synthesis|nicotianamine biosynthesis|nicotianamine formation|nicotianamine anabolism biological_process owl:Class GO:1990584 biolink:NamedThing cardiac Troponin complex A complex of accessory proteins (cardiac troponin T, cardiac troponin I and cardiac troponin C) found associated with actin in cardiac muscle thin filaments; involved in calcium regulation important for muscle contraction. tmpzr1t_l9r_go_relaxed.owl cTnC:cTnI:cTnT ame 2014-12-12T16:51:41Z cellular_component owl:Class GO:0005861 biolink:NamedThing troponin complex A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0080035 biolink:NamedThing 2-hydroxy-but-3-enyl glucosinolate biosynthetic process The chemical reactions and pathways resulting in the formation of progoitrin, a 2-hydroxy-but-3-enyl glucosinolate. Glucosinolates are substituted thioglucosides found in rapeseed products and related cruciferae, and progoitrin has been implicated in causing goiters in mammals and bitter taste in cruciferous vegetables. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-but-3-enyl glucosinolate anabolism|progoitrin synthesis|2-hydroxy-but-3-enyl glucosinolate biosynthesis|progoitrin biosynthesis|progoitrin biosynthetic process|2-hydroxy-but-3-enyl glucosinolate synthesis|2-hydroxy-but-3-enyl glucosinolate formation biological_process owl:Class GO:1903022 biolink:NamedThing positive regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands Any process that activates or increases the frequency, rate or extent of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands. tmpzr1t_l9r_go_relaxed.owl activation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands|upregulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands|up regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands|up-regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands tb 2014-05-14T23:44:47Z biological_process owl:Class GO:0031459 biolink:NamedThing ABC-type glycine betaine transporter activity Catalysis of the reaction: ATP + H2O + glycine betaine(out) = ADP + phosphate + glycine betaine(in). tmpzr1t_l9r_go_relaxed.owl glycine betaine ABC transporter|N-trimethylglycine-transporting ATPase activity|glycine betaine-transporting ATPase activity|ATP-dependent glycine betaine transporter activity|ATPase-coupled glycine betaine transporter activity RHEA:32783 molecular_function owl:Class GO:0015418 biolink:NamedThing ABC-type quaternary ammonium compound transporting activity Catalysis of the reaction: ATP + H2O + quaternary ammonium(out) = ADP + H(+) + phosphate + quaternary ammonium(in). tmpzr1t_l9r_go_relaxed.owl quarternary amine transporter activity|ATP-dependent quaternary-ammonium compound transmembrane transporting activity|glycine betaine/proline porter activity|quaternary-ammonium-compound ABC transporter|quaternary amine uptake transporter activity|quaternary-ammonium-compound-transporting ATPase activity|quaternary-amine-transporting ATPase activity|ATPase-coupled quaternary ammonium compound transmembrane transporting activity MetaCyc:RXN-8638|RHEA:11036|EC:7.6.2.9|MetaCyc:3.6.3.32-RXN GO:0102908 molecular_function owl:Class GO:0035906 biolink:NamedThing descending aorta development The progression of the descending aorta over time, from its initial formation to the mature structure. The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries. In a two-pass circulatory system blood passes twice through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:05:22Z biological_process owl:Class GO:0043214 biolink:NamedThing ABC-type bacteriocin transporter activity Enables the transfer of a bacteriocin from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl bacteriocin ABC transporter|ATPase-coupled bacteriocin transmembrane transporter activity|ABC-type bacteriocin transmembrane transporter activity molecular_function owl:Class GO:0008559 biolink:NamedThing ABC-type xenobiotic transporter activity Catalysis of the reaction: ATP + H2O + xenobiotic(in) = ADP + phosphate + xenobiotic(out). tmpzr1t_l9r_go_relaxed.owl ATP-dependent xenobiotic transmembrane transporter activity|xenobiotic ABC transporter|multidrug-resistance protein|MDR protein|ATP phosphohydrolase (xenobiotic-exporting)|ATPase-coupled xenobiotic transmembrane transporter activity|PDR protein|xenobiotic transmembrane transporting ATPase activity|multidrug resistance exporter|P-glycoprotein|pleiotropic-drug-resistance protein MetaCyc:3.6.3.44-RXN|EC:7.6.2.2 GO:0005226|GO:0008560 molecular_function owl:Class GO:0072721 biolink:NamedThing cellular response to dithiothreitol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dithiothreitol stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 1,4-dithiothreitol|cellular response to DTT mah 2012-05-09T11:09:08Z biological_process owl:Class GO:0061433 biolink:NamedThing cellular response to caloric restriction Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of caloric restriction, insufficient food energy intake. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-09T09:03:15Z biological_process owl:Class GO:0061771 biolink:NamedThing response to caloric restriction A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caloric restriction, insufficient food energy intake. tmpzr1t_l9r_go_relaxed.owl dph 2016-07-09T09:40:32Z biological_process owl:Class GO:0002637 biolink:NamedThing regulation of immunoglobulin production Any process that modulates the frequency, rate, or extent of immunoglobulin production. tmpzr1t_l9r_go_relaxed.owl regulation of immunoglobulin secretion|regulation of antibody production|regulation of immunoglobulin biosynthetic process GO:0002640|GO:0051023 biological_process owl:Class GO:0098610 biolink:NamedThing adhesion between unicellular organisms The attachment of two unicellular organisms to each other. tmpzr1t_l9r_go_relaxed.owl multi-organismal cell-cell adhesion|adhesion between unicellular organisms via cell-wall interaction https://github.com/geneontology/go-ontology/issues/18814 GO:0098741 biological_process owl:Class GO:0030861 biolink:NamedThing negative regulation of polarized epithelial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of polarized epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of polarized epithelial cell differentiation|down-regulation of polarized epithelial cell differentiation|downregulation of polarized epithelial cell differentiation|down regulation of polarized epithelial cell differentiation biological_process owl:Class GO:0046475 biolink:NamedThing glycerophospholipid catabolic process The chemical reactions and pathways resulting in the breakdown of glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. tmpzr1t_l9r_go_relaxed.owl glycerophospholipid catabolism|phosphoglyceride catabolism|phosphoglyceride catabolic process|glycerophospholipid degradation|glycerophospholipid breakdown biological_process owl:Class GO:0046503 biolink:NamedThing glycerolipid catabolic process The chemical reactions and pathways resulting in the breakdown of glycerolipids, any lipid with a glycerol backbone. tmpzr1t_l9r_go_relaxed.owl glycerolipid breakdown|glycerolipid degradation|glycerolipid catabolism biological_process owl:Class GO:0110111 biolink:NamedThing negative regulation of animal organ morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of animal organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-05T14:25:21Z biological_process owl:Class GO:0060190 biolink:NamedThing negative regulation of protein desumoylation Any process that decreases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903321 biolink:NamedThing negative regulation of protein modification by small protein conjugation or removal Any process that stops, prevents or reduces the frequency, rate or extent of protein modification by small protein conjugation or removal. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein modification by small protein conjugation or removal|inhibition of protein modification by small protein conjugation or removal|downregulation of protein modification by small protein conjugation or removal|down regulation of protein modification by small protein conjugation or removal vw 2014-08-18T13:01:08Z biological_process owl:Class GO:0010675 biolink:NamedThing regulation of cellular carbohydrate metabolic process Any process that modulates the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903329 biolink:NamedThing regulation of iron-sulfur cluster assembly Any process that modulates the frequency, rate or extent of iron-sulfur cluster assembly. tmpzr1t_l9r_go_relaxed.owl vw 2014-08-18T13:12:41Z biological_process owl:Class GO:0071793 biolink:NamedThing bacillithiol biosynthetic process The chemical reactions and pathways resulting in the formation of bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species. tmpzr1t_l9r_go_relaxed.owl bacillithiol biosynthesis|bacillithiol anabolism|bacillithiol synthesis|bacillithiol formation mah 2010-09-02T11:16:04Z biological_process owl:Class GO:1905100 biolink:NamedThing regulation of apoptosome assembly Any process that modulates the frequency, rate or extent of apoptosome assembly. tmpzr1t_l9r_go_relaxed.owl regulation of apoptosome formation bc 2016-04-04T08:57:42Z biological_process owl:Class GO:0090325 biolink:NamedThing regulation of locomotion involved in locomotory behavior Any process that modulates the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:24:29Z biological_process owl:Class GO:0048222 biolink:NamedThing glycoprotein network An extracellular matrix part that consists of cross-linked glycoproteins. tmpzr1t_l9r_go_relaxed.owl extensin Wikipedia:Extensin cellular_component owl:Class GO:0062174 biolink:NamedThing brexanolone biosynthetic process The chemical reactions and pathways resulting in the formation of brexanolone. tmpzr1t_l9r_go_relaxed.owl allotetrahydroprogesterone anabolism|allotetrahydroprogesterone synthesis|allotetrahydroprogesterone biosynthetic process|allopregnanolone synthesis|allopregnanolone biosynthesis|allopregnanolone anabolism|allopregnanolone biosynthetic process|allotetrahydroprogesterone biosynthesis|brexanolone synthesis|brexanolone anabolism|brexanolone biosynthesis dph 2019-11-18T19:48:14Z biological_process owl:Class GO:1900871 biolink:NamedThing chloroplast mRNA modification The covalent alteration within the chloroplast of one or more nucleotides within an mRNA to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl mRNA editing in chloroplast|chloroplast mRNA editing dhl 2012-06-12T06:13:58Z biological_process owl:Class GO:0016556 biolink:NamedThing mRNA modification The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl mRNA editing The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specific child terms of 'RNA editing'. GO:0006381 biological_process owl:Class GO:2000266 biolink:NamedThing regulation of blood coagulation, intrinsic pathway Any process that modulates the frequency, rate or extent of blood coagulation, intrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:45:40Z biological_process owl:Class GO:2000781 biolink:NamedThing positive regulation of double-strand break repair Any process that activates or increases the frequency, rate or extent of double-strand break repair. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-23T09:28:13Z biological_process owl:Class GO:0008343 biolink:NamedThing adult feeding behavior Feeding behavior in a fully developed and mature organism. tmpzr1t_l9r_go_relaxed.owl adult feeding behaviour See also the biological process term 'feeding behavior ; GO:0007631'. biological_process owl:Class GO:0007631 biolink:NamedThing feeding behavior Behavior associated with the intake of food. tmpzr1t_l9r_go_relaxed.owl hematophagy|feeding from vascular tissue of another organism|feeding from xylem of other organism|taking of blood meal|behavioural response to food|feeding from tissue of other organism|feeding on plant sap|injection of substance into other organism during feeding on blood of other organism|feeding from plant phloem|eating|behavioral response to food|feeding behaviour|feeding on or from other organism|feeding from phloem of other organism|feeding on blood of other organism https://github.com/geneontology/go-ontology/issues/18547 Wikipedia:List_of_feeding_behaviours See also the biological process term 'behavior ; GO:0007610'. jl 2011-10-27T03:53:33Z GO:0044367|GO:0044368|GO:0044369|GO:0044372|GO:0044366|GO:0044371|GO:0044370 biological_process owl:Class GO:0009873 biolink:NamedThing ethylene-activated signaling pathway A series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ethylene mediated signaling pathway|ethylene signal transduction|ethylene signaling pathway|ethene mediated signalling pathway|ethylene mediated signalling pathway|ethene mediated signaling pathway biological_process owl:Class GO:0009755 biolink:NamedThing hormone-mediated signaling pathway A series of molecular signals mediated by the detection of a hormone. tmpzr1t_l9r_go_relaxed.owl hormone mediated signalling biological_process owl:Class GO:0016774 biolink:NamedThing phosphotransferase activity, carboxyl group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a carboxyl group (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.2.- molecular_function owl:Class GO:0055069 biolink:NamedThing zinc ion homeostasis Any process involved in the maintenance of an internal steady state of zinc ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl zinc homeostasis biological_process owl:Class GO:0055076 biolink:NamedThing transition metal ion homeostasis Any process involved in the maintenance of an internal steady state of transition metal ions within an organism or cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031243 biolink:NamedThing intrinsic component of external side of cell outer membrane The component of the cell outer membrane consisting of the gene products and protein complexes that penetrate the external side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor. tmpzr1t_l9r_go_relaxed.owl intrinsic to external side of cell outer membrane|intrinsic to external leaflet of cell outer membrane|intrinsic to external side of outer membrane cellular_component owl:Class GO:0048240 biolink:NamedThing sperm capacitation A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium. tmpzr1t_l9r_go_relaxed.owl sperm activation Avian spermatozoa do not require a period of capacitation, since they are competent to fertilize the egg without a prolonged sojourn in the oviduct or in a capacitation medium in vitro. Therefore, sperm capacitation can only be applied to Aves to refer to gene products involved in processes that occur prior to sperm being deposited from the avian male. The term cannot apply to processes occurring in the avian female reproductive tract. biological_process owl:Class GO:0062087 biolink:NamedThing positive regulation of vein smooth muscle contraction Any process that increases the frequency, rate or extent of vein smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-02T15:20:47Z biological_process owl:Class GO:0035713 biolink:NamedThing response to nitrogen dioxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen dioxide (NO2) stimulus. tmpzr1t_l9r_go_relaxed.owl response to NO2 bf 2011-03-02T03:14:51Z biological_process owl:Class GO:1901124 biolink:NamedThing bacitracin A biosynthetic process The chemical reactions and pathways resulting in the formation of bacitracin A. tmpzr1t_l9r_go_relaxed.owl bacitracin A formation|bacitracin A anabolism|bacitracin A biosynthesis|bacitracin A synthesis yaf 2012-07-11T03:16:27Z biological_process owl:Class GO:0016775 biolink:NamedThing phosphotransferase activity, nitrogenous group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a nitrogenous group (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.3.- molecular_function owl:Class GO:0000901 biolink:NamedThing translation repressor activity, non-nucleic acid binding Antagonizes the ribosome-mediated translation of mRNA into a polypeptide but does not bind directly to nucleic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030371 biolink:NamedThing translation repressor activity Antagonizes ribosome-mediated translation of mRNA into a polypeptide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905894 biolink:NamedThing regulation of cellular response to tunicamycin Any process that modulates the frequency, rate or extent of cellular response to tunicamycin. tmpzr1t_l9r_go_relaxed.owl bc 2017-02-01T11:36:34Z biological_process owl:Class GO:0030937 biolink:NamedThing collagen type XVII trimer A collagen homotrimer of alpha1(XVII) chains; type XVII collagen triple helices span the plasma membrane and associate with hemidesmosomes and the basal lamina where they bind laminin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030936 biolink:NamedThing transmembrane collagen trimer Any collagen trimer that passes through a lipid bilayer membrane. tmpzr1t_l9r_go_relaxed.owl MACIT cellular_component owl:Class GO:0022803 biolink:NamedThing passive transmembrane transporter activity Enables the transfer of a single solute from one side of a membrane to the other by a mechanism involving conformational change, either by facilitated diffusion or in a membrane potential dependent process if the solute is charged. tmpzr1t_l9r_go_relaxed.owl porters|facilitated diffusion|uniporter activity z Wikipedia:Facilitated_diffusion|Reactome:R-HSA-429767 GO:0022814 molecular_function owl:Class GO:0000708 biolink:NamedThing meiotic strand invasion The cell cycle process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. This occurs during meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic displacement loop formation|meiotic D-loop biosynthesis|meiotic D-loop formation|meiotic displacement loop biosynthesis biological_process owl:Class GO:0042148 biolink:NamedThing strand invasion The process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl displacement loop formation|D-loop formation|Rad51-mediated strand invasion|displacement loop biosynthesis|D-loop biosynthesis biological_process owl:Class GO:1901776 biolink:NamedThing mitomycin C catabolic process The chemical reactions and pathways resulting in the breakdown of mitomycin C. tmpzr1t_l9r_go_relaxed.owl mitomycin C degradation|mitomycin C catabolism|mitomycin C breakdown yaf 2013-01-15T12:11:52Z biological_process owl:Class GO:0140007 biolink:NamedThing KICSTOR complex A protein complex that regulates the TORC1 signaling pathway in response to nutrients. The KICSTOR complex is composed of KPTN, ITFG2, C12orf66 and SZT2. tmpzr1t_l9r_go_relaxed.owl pg 2017-03-10T12:47:30Z cellular_component owl:Class GO:1903113 biolink:NamedThing copper ion transmembrane transporter complex A protein complex which is capable of copper ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl An example of this is CusA in E. coli (UniProt symbol P38054) in PMID:23122209 (inferred from direct assay). bhm 2014-06-10T09:54:48Z cellular_component owl:Class GO:0050886 biolink:NamedThing endocrine process The process that involves the secretion of or response to endocrine hormones. An endocrine hormone is a hormone released into the circulatory system. tmpzr1t_l9r_go_relaxed.owl endocrine physiological process|endocrine physiology biological_process owl:Class GO:0002721 biolink:NamedThing regulation of B cell cytokine production Any process that modulates the frequency, rate, or extent of B cell cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte cytokine production|regulation of B lymphocyte cytokine production|regulation of B-cell cytokine production biological_process owl:Class GO:1900729 biolink:NamedThing regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway Any process that modulates the frequency, rate or extent of adenylate cyclase-inhibiting opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of opioid receptor-mediated adenylate cyclase inhibition|regulation of inhibition of adenylate cyclase activity by opioid receptor signaling pathway|regulation of inhibition of adenylate cyclase activity by opioid receptor|regulation of inhibition of adenylate cyclase activity by opioid receptor signalling pathway bf 2012-05-25T03:20:49Z biological_process owl:Class GO:0052671 biolink:NamedThing geranylgeraniol kinase activity Catalysis of the reaction: geranylgeraniol + nucleoside triphosphate = all-trans-geranyl-geranyl monophosphate + nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeraniol phosphotransferase activity ai 2011-04-11T03:18:44Z molecular_function owl:Class GO:0005756 biolink:NamedThing mitochondrial proton-transporting ATP synthase, central stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002622 biolink:NamedThing regulation of B cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of B cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl regulation of B-cell antigen processing and presentation|regulation of B lymphocyte antigen processing and presentation|regulation of B-lymphocyte antigen processing and presentation biological_process owl:Class GO:0002577 biolink:NamedThing regulation of antigen processing and presentation Any process that modulates the frequency, rate, or extent of antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018690 biolink:NamedThing 4-methoxybenzoate monooxygenase (O-demethylating) activity Catalysis of the reaction: 4-methoxybenzoate + AH(2) + O(2) = 4-hydroxybenzoate + A + formaldehyde + H(2)O. tmpzr1t_l9r_go_relaxed.owl 4-methoxybenzoate monooxygenase activity|4-methoxybenzoate 4-monooxygenase (O-demethylating)|4-methoxybenzoate,hydrogen-donor:oxygen oxidoreductase (O-demethylating)|4-methoxybenzoate O-demethylase activity|piperonylate-4-O-demethylase activity|p-anisic O-demethylase activity EC:1.14.99.15|RHEA:18613|KEGG_REACTION:R01306|MetaCyc:1.14.99.15-RXN|UM-BBD_reactionID:r0154 molecular_function owl:Class GO:1902136 biolink:NamedThing (-)-secoisolariciresinol metabolic process The chemical reactions and pathways involving (-)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-secoisolariciresinol metabolism ms 2013-05-21T08:50:19Z biological_process owl:Class GO:1990519 biolink:NamedThing pyrimidine nucleotide import into mitochondrion The process in which a pyrimidine nucleotide is transported across the mitochondrial inner membrane, into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl mitochondrial pyrimidine nucleotide import vw 2014-10-22T10:20:23Z biological_process owl:Class GO:2000332 biolink:NamedThing regulation of blood microparticle formation Any process that modulates the frequency, rate or extent of blood microparticle formation. tmpzr1t_l9r_go_relaxed.owl regulation of microparticle generation|regulation of microparticle release mah 2011-01-31T11:18:11Z biological_process owl:Class GO:0035754 biolink:NamedThing B cell chemotaxis The directed movement of a B cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl bf 2011-03-23T10:30:33Z biological_process owl:Class GO:0110099 biolink:NamedThing negative regulation of calcium import into the mitochondrion Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion import into the mitochondrion. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-28T00:42:06Z biological_process owl:Class GO:0110097 biolink:NamedThing regulation of calcium import into the mitochondrion Any process that modulates the frequency, rate or extent of calcium import into the mitochondrion. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-28T00:33:51Z biological_process owl:Class GO:1900766 biolink:NamedThing emericellin biosynthetic process The chemical reactions and pathways resulting in the formation of emericellin. tmpzr1t_l9r_go_relaxed.owl Variecoxanthone B formation|emericellin biosynthesis|Variecoxanthone B biosynthesis|Variecoxanthone B synthesis|Variecoxanthone B anabolism|emericellin anabolism|emericellin formation|emericellin synthesis|Variecoxanthone B biosynthetic process di 2012-06-04T09:18:29Z biological_process owl:Class GO:0052201 biolink:NamedThing response to symbiont defenses Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002924 biolink:NamedThing negative regulation of humoral immune response mediated by circulating immunoglobulin Any process that stops, prevents, or reduces the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin. tmpzr1t_l9r_go_relaxed.owl down-regulation of humoral immune response mediated by circulating immunoglobulin|down regulation of humoral immune response mediated by circulating immunoglobulin|downregulation of humoral immune response mediated by circulating immunoglobulin|inhibition of humoral immune response mediated by circulating immunoglobulin biological_process owl:Class GO:0002923 biolink:NamedThing regulation of humoral immune response mediated by circulating immunoglobulin Any process that modulates the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000433 biolink:NamedThing carbon catabolite repression of transcription from RNA polymerase II promoter by glucose A transcription regulation process in which the presence of glucose leads to a decrease in the frequency, rate, or extent of transcription of specific RNA polymerase II-transcribed genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription from RNA polymerase II promoter by glucose|down regulation of transcription from RNA polymerase II promoter by glucose|down-regulation of transcription from RNA polymerase II promoter by glucose|downregulation of transcription from RNA polymerase II promoter by glucose biological_process owl:Class GO:0045014 biolink:NamedThing carbon catabolite repression of transcription by glucose A transcription regulation process in which the presence of glucose leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances. tmpzr1t_l9r_go_relaxed.owl down regulation of transcription by glucose|glucose effect|downregulation of transcription by glucose|down-regulation of transcription by glucose|glucose repression|inhibition of transcription by glucose biological_process owl:Class GO:0072554 biolink:NamedThing blood vessel lumenization The process in which a developing blood vessel forms an endothelial lumen through which blood will flow. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-25T05:19:30Z biological_process owl:Class GO:0061154 biolink:NamedThing endothelial tube morphogenesis The process in which the anatomical structures of a tube are generated and organized from an endothelium. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-15T09:05:00Z biological_process owl:Class GO:2001298 biolink:NamedThing N(omega),N(omega)-dimethyl-L-arginine metabolic process The chemical reactions and pathways involving N(omega),N(omega)-dimethyl-L-arginine, a methyl-L-arginine having two methyl groups both attached to the primary amino moiety of the guanidino group. tmpzr1t_l9r_go_relaxed.owl N(omega),N(omega)-dimethyl-L-arginine metabolism pr 2012-02-14T03:39:59Z biological_process owl:Class GO:0002885 biolink:NamedThing positive regulation of hypersensitivity Any process that activates or increases the frequency, rate, or extent of hypersensitivity. tmpzr1t_l9r_go_relaxed.owl stimulation of hypersensitivity|up regulation of hypersensitivity|up-regulation of hypersensitivity|upregulation of hypersensitivity|activation of hypersensitivity biological_process owl:Class GO:0004051 biolink:NamedThing arachidonate 5-lipoxygenase activity Catalysis of the reaction: arachidonate + O2 = (6E,8Z,11Z,14Z)-(5S)-5-hydroperoxycosa-6,8,11,14-tetraenoate. tmpzr1t_l9r_go_relaxed.owl delta(5)-lipoxygenase activity|leukotriene-A4 synthase activity|5-delta-lipoxygenase activity|arachidonic acid 5-lipoxygenase activity|leukotriene A4 synthase|delta5-lipoxygenase activity|LTA synthase activity|5-lipoxygenase activity|leukotriene-A(4) synthase activity|arachidonic 5-lipoxygenase activity|5Delta-lipoxygenase activity|arachidonate:oxygen 5-oxidoreductase activity|C-5-lipoxygenase activity Reactome:R-HSA-9027633|Reactome:R-HSA-9018894|Reactome:R-HSA-9020256|Reactome:R-HSA-9027628|Reactome:R-HSA-9024997|Reactome:R-HSA-266051|Reactome:R-HSA-9027624|Reactome:R-HSA-9020278|Reactome:R-HSA-9026405|Reactome:R-HSA-9025995|Reactome:R-HSA-9020282|Reactome:R-HSA-9026005|EC:1.13.11.34|Reactome:R-HSA-9020277|Reactome:R-HSA-9018859|Reactome:R-HSA-265296|Reactome:R-HSA-9025999|Reactome:R-HSA-9025996|Reactome:R-HSA-9020255|MetaCyc:ARACHIDONATE-5-LIPOXYGENASE-RXN|Reactome:R-HSA-9020251|Reactome:R-HSA-9020264|Reactome:R-HSA-9018863|Reactome:R-HSA-9018858|Reactome:R-HSA-9020259|RHEA:32307 molecular_function owl:Class GO:0050994 biolink:NamedThing regulation of lipid catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of lipids. tmpzr1t_l9r_go_relaxed.owl regulation of lipid degradation|regulation of lipid breakdown|regulation of lipid catabolism biological_process owl:Class GO:2000283 biolink:NamedThing negative regulation of cellular amino acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of cellular amino acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular amino acid anabolism|negative regulation of cellular amino acid biosynthesis|negative regulation of cellular amino acid synthesis|negative regulation of cellular amino acid formation|negative regulation of amino acid biosynthetic process vw 2010-12-10T11:54:23Z biological_process owl:Class GO:2000282 biolink:NamedThing regulation of cellular amino acid biosynthetic process Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellular amino acid formation|regulation of cellular amino acid anabolism|regulation of cellular amino acid biosynthesis|regulation of cellular amino acid synthesis|regulation of amino acid biosynthetic process vw 2010-12-10T11:54:19Z biological_process owl:Class GO:0032399 biolink:NamedThing HECT domain binding Binding to a HECT, 'Homologous to the E6-AP Carboxy-Terminus', domain of a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090435 biolink:NamedThing protein localization to nuclear envelope A process in which a protein is transported to, or maintained at, a location within a nuclear envelope. tmpzr1t_l9r_go_relaxed.owl protein localization in nuclear envelope tb 2012-07-30T01:50:41Z biological_process owl:Class GO:2000097 biolink:NamedThing regulation of smooth muscle cell-matrix adhesion Any process that modulates the frequency, rate or extent of smooth muscle cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T04:22:20Z biological_process owl:Class GO:0010189 biolink:NamedThing vitamin E biosynthetic process The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. tmpzr1t_l9r_go_relaxed.owl alpha-tocopherol biosynthetic process|vitamin E biosynthesis|alpha-tocopherol biosynthesis|tocopherol biosynthesis|vitamin E anabolism|tocopherol biosynthetic process|vitamin E synthesis|vitamin E formation MetaCyc:PWY-1422 biological_process owl:Class GO:0035487 biolink:NamedThing thymine/thymine mispair binding Binding to a double-stranded DNA region containing a T/T mispair. tmpzr1t_l9r_go_relaxed.owl T/T mispair binding bf 2010-04-23T10:56:37Z molecular_function owl:Class GO:0043553 biolink:NamedThing negative regulation of phosphatidylinositol 3-kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of phosphatidylinositol 3-kinase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of phosphatidylinositol 3-kinase activity|negative regulation of PI3K activity|inhibition of phosphatidylinositol 3-kinase activity|downregulation of phosphatidylinositol 3-kinase activity|down regulation of phosphatidylinositol 3-kinase activity|negative regulation of phosphoinositide 3-kinase activity biological_process owl:Class GO:2000406 biolink:NamedThing positive regulation of T cell migration Any process that activates or increases the frequency, rate or extent of T cell migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of T lymphocyte migration|positive regulation of T-lymphocyte migration|positive regulation of T-cell migration mah 2011-02-23T10:49:12Z biological_process owl:Class GO:0017004 biolink:NamedThing cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. tmpzr1t_l9r_go_relaxed.owl cytochrome biogenesis biological_process owl:Class GO:0039513 biolink:NamedThing suppression by virus of host catalytic activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host enzyme activity. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host catalytic activity|down-regulation by virus of host enzyme activity|negative regulation by virus of host catalytic activity|downregulation by virus of host catalytic activity bf 2011-06-16T02:32:49Z biological_process owl:Class GO:1905171 biolink:NamedThing positive regulation of protein localization to phagocytic vesicle Any process that activates or increases the frequency, rate or extent of protein localization to phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl up regulation of protein localisation to phagocytic vesicle|upregulation of protein localization to phagocytic vesicle|activation of protein localization in phagocytic vesicle|activation of protein localisation to phagosome|upregulation of protein localization in phagocytic vesicle|up regulation of protein localisation to phagosome|upregulation of protein localisation to phagocytic vesicle|up-regulation of protein localisation to phagocytic vesicle|upregulation of protein localisation to phagosome|upregulation of protein recruitment to phagosome|up-regulation of protein localisation in phagocytic vesicle|positive regulation of protein localisation to phagosome|upregulation of protein localisation in phagocytic vesicle|up-regulation of protein recruitment to phagosome|up regulation of protein localization to phagocytic vesicle|up regulation of protein recruitment to phagosome|up-regulation of protein localisation to phagosome|activation of protein recruitment to phagosome|activation of protein localization to phagocytic vesicle|up-regulation of protein localization in phagocytic vesicle|positive regulation of protein localisation to phagocytic vesicle|activation of protein localisation in phagocytic vesicle|positive regulation of protein recruitment to phagosome|positive regulation of protein localization in phagocytic vesicle|positive regulation of protein localisation in phagocytic vesicle|up-regulation of protein localization to phagocytic vesicle|activation of protein localisation to phagocytic vesicle|up regulation of protein localisation in phagocytic vesicle|up regulation of protein localization in phagocytic vesicle bf 2016-05-02T18:38:30Z biological_process owl:Class GO:2001199 biolink:NamedThing negative regulation of dendritic cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-04T02:01:33Z biological_process owl:Class GO:2001198 biolink:NamedThing regulation of dendritic cell differentiation Any process that modulates the frequency, rate or extent of dendritic cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-04T02:01:27Z biological_process owl:Class GO:0052648 biolink:NamedThing ribitol phosphate metabolic process The chemical reactions and pathways involving ribitol phosphates, any phosphorylated form of ribitol, the pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. tmpzr1t_l9r_go_relaxed.owl ribitol phosphate metabolism ai 2010-09-22T04:28:37Z biological_process owl:Class GO:0052647 biolink:NamedThing pentitol phosphate metabolic process The chemical reactions and pathways involving pentitol phosphates, any phosphorylated alditol with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentitol phosphate metabolism ai 2010-09-22T04:26:28Z biological_process owl:Class GO:0010561 biolink:NamedThing negative regulation of glycoprotein biosynthetic process Any process that decreases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021516 biolink:NamedThing dorsal spinal cord development The process whose specific outcome is the progression of the dorsal region of the spinal cord over time, from its formation to the mature structure. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102289 biolink:NamedThing beta-amyrin 11-oxidase activity Catalysis of the reaction: beta-amyrin + 2 O2 + 2 NADPH + 2 H+ <=> 11-oxo-beta-amyrin + 3 H2O + 2 NADP. tmpzr1t_l9r_go_relaxed.owl RHEA:31711|EC:1.14.14.152|MetaCyc:RXN-12680 molecular_function owl:Class GO:0018342 biolink:NamedThing protein prenylation The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. tmpzr1t_l9r_go_relaxed.owl C-terminal protein prenylation|protein amino acid prenylation GO:0018346 biological_process owl:Class GO:0001695 biolink:NamedThing histamine catabolic process The chemical reactions and pathways resulting in the breakdown of histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl histamine breakdown|histamine degradation|histamine catabolism biological_process owl:Class GO:1990734 biolink:NamedThing astral microtubule anchoring at mitotic spindle pole body Any process in which an astral microtubule is maintained in a specific location in a cell by attachment to a mitotic spindle pole body. Microtubules attach to spindle pole bodies at the minus end. tmpzr1t_l9r_go_relaxed.owl vw 2015-04-28T12:15:18Z biological_process owl:Class GO:0033859 biolink:NamedThing furaldehyde metabolic process The chemical reactions and pathways involving furaldehyde, a furan ring-containing aldehyde compound which can be formed from the thermal decomposition of biomass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010134 biolink:NamedThing sulfate assimilation via adenylyl sulfate reduction The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase. tmpzr1t_l9r_go_relaxed.owl sulphate assimilation via adenylyl sulphate reduction MetaCyc:SULFMETII-PWY biological_process owl:Class GO:0019419 biolink:NamedThing sulfate reduction The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide, adenosine-phosphosulfate (APS) or thiosulfate. tmpzr1t_l9r_go_relaxed.owl assimilatory sulphate reduction|sulphate reduction|sulfate reduction, APS pathway|sulphate reduction, APS pathway|assimilatory sulfate reduction GO:0019421 biological_process owl:Class GO:0097528 biolink:NamedThing execution phase of necroptosis A stage of the necroptotic process that starts after a necroptotic signal has been relayed to the execution machinery. Key steps of the execution phase are swelling of organelles, minor ultrastructural modifications of the nucleus (specifically, dilatation of the nuclear membrane and condensation of chromatin into small, irregular, circumscribed patches) and increased cell volume (oncosis), culminating in the disruption of the plasma membrane and subsequent loss of intracellular contents. The execution phase ends when the cell has died. tmpzr1t_l9r_go_relaxed.owl necroptosis|execution phase of necroptotic process|necroptotic execution phase pr 2013-11-05T14:23:53Z biological_process owl:Class GO:0003155 biolink:NamedThing BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to the determination of lateral mesoderm left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination tb 2009-09-24T05:42:17Z biological_process owl:Class GO:0048091 biolink:NamedThing positive regulation of female pigmentation Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in females. tmpzr1t_l9r_go_relaxed.owl stimulation of female pigmentation|activation of female pigmentation|up-regulation of female pigmentation|upregulation of female pigmentation|up regulation of female pigmentation biological_process owl:Class GO:0061924 biolink:NamedThing regulation of formation of radial glial scaffolds Any process that modulates the frequency, rate or extent of the formation of radial glial scaffolds. The scaffolds are used as a substrate for the radial migration of cells. tmpzr1t_l9r_go_relaxed.owl regulation of Bergmann fiber formation|regulation of Bergmann fiber biosynthesis|regulation of radial glial scaffold formation dph 2017-08-02T16:17:31Z biological_process owl:Class GO:0047971 biolink:NamedThing guanidinobutyrase activity Catalysis of the reaction: 4-guanidinobutanoate + H(2)O = 4-aminobutanoate + urea. tmpzr1t_l9r_go_relaxed.owl gamma-guanidinobutyrate amidinohydrolase activity|4-guanidinobutyrate amidinobutyrase activity|4-guanidinobutanoate amidinohydrolase activity|G-base activity|gamma-guanidobutyrase activity|GBH|guanidinobutyrate ureahydrolase activity KEGG_REACTION:R01990|RHEA:19501|MetaCyc:GUANIDINOBUTYRASE-RXN|EC:3.5.3.7 molecular_function owl:Class GO:0070791 biolink:NamedThing cleistothecium development The process whose specific outcome is the progression of the cleistothecium over time, from its formation to the mature structure. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T02:52:32Z biological_process owl:Class GO:0000909 biolink:NamedThing sporocarp development involved in sexual reproduction The process whose specific outcome is the progression of a fruiting body organ over time, from its formation to the mature structure. The fruiting body is a spore bearing structure. In fungi, the sporocarp (also known as fruiting body) is a multicellular structure on which spore-producing structures, such as basidia or asci, are borne. The fruiting body is part of the sexual phase of a fungal life cycle, with the rest of the life cycle being characterized by vegetative mycelial growth. The sporocarp of a basidiomycete is known as a basidiocarp, while the fruiting body of an ascomycete is known as an ascocarp. A significant range of different shapes and morphologies is found in both basidiocarps and ascocarps; these features play an important role in the identification and taxonomy of fungi. tmpzr1t_l9r_go_relaxed.owl fruiting body development involved in sexual reproduction|fruiting body formation involved in sexual reproduction|perfect stage fruiting body development|ascus development biological_process owl:Class GO:1904047 biolink:NamedThing S-adenosyl-L-methionine binding Binding to S-adenosyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl radical SAM enzyme activity Reactome:R-HSA-947535 hal 2015-03-17T10:32:16Z GO:0070283 molecular_function owl:Class GO:0018674 biolink:NamedThing (S)-limonene 3-monooxygenase activity Catalysis of the reaction: (4S)-limonene + H(+) + NADPH + O(2) = (1S,6R)-isopiperitenol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl (S)-limonene,NADPH:oxygen oxidoreductase (3-hydroxylating)|(-)-limonene,NADPH:oxygen oxidoreductase (3-hydroxylating) activity|(-)-limonene 3-monooxygenase activity|limonene 3-hydroxylase activity|(-)-limonene 3-hydroxylase activity RHEA:15129|MetaCyc:--LIMONENE-3-MONOOXYGENASE-RXN|KEGG_REACTION:R02469|EC:1.14.14.99|UM-BBD_reactionID:r0739 molecular_function owl:Class GO:0019113 biolink:NamedThing limonene monooxygenase activity Catalysis of a monooxygenase reaction in which oxygen is incorporated into limonene. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.- molecular_function owl:Class GO:0090156 biolink:NamedThing cellular sphingolipid homeostasis Any biological process involved in the maintenance of an internal steady state of sphingolipids at the level of the cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T08:21:36Z biological_process owl:Class GO:0055082 biolink:NamedThing cellular chemical homeostasis Any biological process involved in the maintenance of an internal steady state of a chemical at the level of the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032880 biolink:NamedThing regulation of protein localization Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl regulation of cellular protein localisation|regulation of cellular protein localization|regulation of protein localisation https://github.com/geneontology/go-ontology/issues/22021 jl 2015-01-20T14:32:14Z GO:1903827 biological_process owl:Class GO:0070366 biolink:NamedThing regulation of hepatocyte differentiation Any process that modulates the frequency, rate or extent of hepatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of liver cell differentiation biological_process owl:Class GO:1901532 biolink:NamedThing regulation of hematopoietic progenitor cell differentiation Any process that modulates the frequency, rate or extent of hematopoietic progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of hemopoietic progenitor cell differentiation|regulation of haematopoietic progenitor cell differentiation|regulation of haemopoietic progenitor cell differentiation vk 2012-10-24T11:23:01Z biological_process owl:Class GO:0090081 biolink:NamedThing regulation of heart induction by regulation of canonical Wnt signaling pathway Any process that modulates the rate, frequency or extent of canonical Wnt signaling pathway that regulates heart induction. Canonical Wnt signaling pathway involved in heart induction is the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, followed by relaying of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl regulation of heart induction by regulation of canonical Wnt receptor signalling pathway|regulation of heart induction by regulation of canonical Wnt receptor signaling pathway|regulation of heart induction by regulation of canonical Wnt-activated signaling pathway tb 2009-10-23T10:55:18Z biological_process owl:Class GO:1900386 biolink:NamedThing positive regulation of flavonol biosynthetic process Any process that activates or increases the frequency, rate or extent of flavonol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of flavonol biosynthetic process|upregulation of flavonol biosynthetic process|up-regulation of flavonol biosynthetic process|up regulation of flavonol biosynthetic process tb 2012-04-17T10:23:09Z biological_process owl:Class GO:0070980 biolink:NamedThing biphenyl catabolic process The chemical reactions and pathways resulting in the breakdown of biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs). tmpzr1t_l9r_go_relaxed.owl biphenyl degradation|biphenyl breakdown|biphenyl catabolism mah 2009-10-27T11:24:59Z biological_process owl:Class GO:0031479 biolink:NamedThing myosin IX complex A myosin complex containing a class IX myosin heavy chain and associated light chains. Myosin IX is monomeric with a motor domain containing an N-terminal extension and an insert in the actin binding interface, followed by four to six IQ motifs and a tail region that contains a zinc binding motif and a domain with homology to GTPase activating proteins (GAPs) of the Rho family of G-proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042865 biolink:NamedThing pyochelin catabolic process The chemical reactions and pathways resulting in the breakdown of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid). tmpzr1t_l9r_go_relaxed.owl pyochelin breakdown|pyochelin degradation|pyochelin catabolism biological_process owl:Class GO:0045717 biolink:NamedThing negative regulation of fatty acid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids. tmpzr1t_l9r_go_relaxed.owl negative regulation of fatty acid synthesis|negative regulation of fatty acid formation|negative regulation of fatty acid biosynthesis|down regulation of fatty acid biosynthetic process|downregulation of fatty acid biosynthetic process|inhibition of fatty acid biosynthetic process|negative regulation of fatty acid anabolism|down-regulation of fatty acid biosynthetic process biological_process owl:Class GO:0045922 biolink:NamedThing negative regulation of fatty acid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving fatty acids. tmpzr1t_l9r_go_relaxed.owl negative regulation of fatty acid metabolism|downregulation of fatty acid metabolic process|inhibition of fatty acid metabolic process|down-regulation of fatty acid metabolic process|down regulation of fatty acid metabolic process biological_process owl:Class GO:1900672 biolink:NamedThing positive regulation of F-9775A biosynthetic process Any process that activates or increases the frequency, rate or extent of F-9775A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of F-9775A biosynthetic process|positive regulation of F-9775A anabolism|upregulation of F-9775A biosynthesis|up-regulation of F-9775A biosynthetic process|up regulation of F-9775A biosynthesis|upregulation of F-9775A biosynthetic process|activation of F-9775A biosynthesis|activation of F-9775A synthesis|positive regulation of F-9775A biosynthesis|upregulation of F-9775A anabolism|upregulation of F-9775A formation|activation of F-9775A anabolism|activation of F-9775A formation|up regulation of F-9775A formation|up regulation of F-9775A synthesis|up-regulation of F-9775A biosynthesis|up regulation of F-9775A anabolism|up-regulation of F-9775A synthesis|up regulation of F-9775A biosynthetic process|up-regulation of F-9775A anabolism|upregulation of F-9775A synthesis|positive regulation of F-9775A synthesis|up-regulation of F-9775A formation|positive regulation of F-9775A formation di 2012-05-22T04:24:37Z biological_process owl:Class GO:0061150 biolink:NamedThing renal system segmentation The regionalization process that divides an the renal system into a series of segments along its proximal/distal axis. tmpzr1t_l9r_go_relaxed.owl urinary tract segmentation dph 2010-06-02T09:23:01Z biological_process owl:Class GO:0072048 biolink:NamedThing renal system pattern specification Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate into the anatomical structures of the renal system. tmpzr1t_l9r_go_relaxed.owl renal system pattern formation mah 2010-01-25T03:31:51Z biological_process owl:Class GO:1903882 biolink:NamedThing negative regulation of interleukin-17-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-17-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-17-mediated signaling pathway|down regulation of interleukin-17-mediated signalling pathway|down regulation of interleukin-17-mediated signaling pathway|down-regulation of interleukin-17-mediated signalling pathway|down-regulation of IL-17-mediated signalling pathway|downregulation of IL-17-mediated signalling pathway|down regulation of IL-17-mediated signaling pathway|inhibition of interleukin-17-mediated signalling pathway|negative regulation of interleukin-17-mediated signalling pathway|down regulation of IL-17-mediated signalling pathway|downregulation of interleukin-17-mediated signalling pathway|inhibition of interleukin-17-mediated signaling pathway|downregulation of IL-17-mediated signaling pathway|inhibition of IL-17-mediated signaling pathway|down-regulation of IL-17-mediated signaling pathway|downregulation of interleukin-17-mediated signaling pathway|negative regulation of IL-17-mediated signalling pathway|inhibition of IL-17-mediated signalling pathway|negative regulation of IL-17-mediated signaling pathway krc 2015-02-06T16:26:47Z biological_process owl:Class GO:1903881 biolink:NamedThing regulation of interleukin-17-mediated signaling pathway Any process that modulates the frequency, rate or extent of interleukin-17-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of IL-17-mediated signaling pathway|regulation of interleukin-17-mediated signalling pathway|regulation of IL-17-mediated signalling pathway krc 2015-02-06T16:26:38Z biological_process owl:Class GO:0103079 biolink:NamedThing 2-(3'-methylthio)propylmalate synthase activity Catalysis of the reaction: 5-methylthio-2-oxopentanoate + acetyl-CoA + H2O <=> H+ + 2-(3-methylthiopropyl)malate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl RHEA:25605|MetaCyc:RXNQT-4163 molecular_function owl:Class GO:2000116 biolink:NamedThing regulation of cysteine-type endopeptidase activity Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of thiol endopeptidase activity|regulation of lysosomal cysteine-type endopeptidase jl 2010-09-23T10:24:33Z biological_process owl:Class GO:0052548 biolink:NamedThing regulation of endopeptidase activity Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl protease regulator activity biological_process owl:Class GO:0002768 biolink:NamedThing immune response-regulating cell surface receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell capable of activating, perpetuating, or inhibiting an immune response. tmpzr1t_l9r_go_relaxed.owl immune response-regulating cell surface receptor signalling pathway biological_process owl:Class GO:0000018 biolink:NamedThing regulation of DNA recombination Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004483 biolink:NamedThing mRNA (nucleoside-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + m7G(5')pppR-RNA = S-adenosyl-L-homocysteine + m7G(5')pppRm-RNA. R may be guanosine or adenosine. tmpzr1t_l9r_go_relaxed.owl messenger ribonucleate nucleoside 2'-methyltransferase activity|S-adenosyl-L-methionine:mRNA (nucleoside-2'-O-)-methyltransferase activity|mRNA (adenosine-2'-O-)-methyltransferase activity|messenger RNA (nucleoside-2'-)-methyltransferase activity Reactome:R-HSA-9684033|EC:2.1.1.57|Reactome:R-HSA-9684032|Reactome:R-HSA-9694721|Reactome:R-HSA-9694521|Reactome:R-HSA-9684030|MetaCyc:2.1.1.57-RXN|Reactome:R-HSA-9694499 molecular_function owl:Class GO:0008171 biolink:NamedThing O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5578717|Reactome:R-HSA-5629203|Reactome:R-HSA-6790907|Reactome:R-HSA-5629218|Reactome:R-HSA-5629237|EC:2.1.1.- molecular_function owl:Class GO:0047161 biolink:NamedThing tartronate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: hydroxymalonate + sinapoyl-CoA = CoA + sinapoyltartronate. tmpzr1t_l9r_go_relaxed.owl sinapoyl-CoA:2-hydroxymalonate O-(hydroxycinnamoyl)transferase activity|tartronate sinapoyltransferase activity|hydroxycinnamoyl-coenzyme-A:tartronate hydroxycinnamoyltransferase activity EC:2.3.1.106|MetaCyc:2.3.1.106-RXN|KEGG_REACTION:R03965|RHEA:10952 molecular_function owl:Class GO:0050737 biolink:NamedThing O-hydroxycinnamoyltransferase activity Catalysis of the transfer of a hydroxycinnamoyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035450 biolink:NamedThing extrinsic component of lumenal side of plastid thylakoid membrane The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to its lumenal surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to lumenal leaflet of plastid thylakoid membrane|extrinsic to lumenal side of plastid thylakoid membrane|peripheral to lumenal side of plastid thylakoid membrane bf 2010-04-16T10:17:25Z cellular_component owl:Class GO:1902557 biolink:NamedThing 5'-adenylyl sulfate transmembrane transporter activity Enables the transfer of 5'-adenylyl sulfate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl An example of this is the YPR011C gene product in S. cerevisiae in PMID:24296033. mcc 2013-12-09T23:08:05Z molecular_function owl:Class GO:0047030 biolink:NamedThing 4-hydroxycyclohexanecarboxylate dehydrogenase activity Catalysis of the reaction: trans-4-hydroxycyclohexanecarboxylate + NAD(+) = 4-oxocyclohexanecarboxylate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl trans-4-hydroxycyclohexanecarboxylate:NAD+ 4-oxidoreductase activity|trans-4-hydroxycyclohexanecarboxylate dehydrogenase activity MetaCyc:1.1.1.226-RXN|EC:1.1.1.226|RHEA:17429|KEGG_REACTION:R04307 molecular_function owl:Class GO:1905147 biolink:NamedThing regulation of smooth muscle hypertrophy Any process that modulates the frequency, rate or extent of smooth muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl bc 2016-04-15T12:47:07Z biological_process owl:Class GO:0014743 biolink:NamedThing regulation of muscle hypertrophy Any process that modulates the frequency, rate or extent of muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018864 biolink:NamedThing acetylene metabolic process The chemical reactions and pathways involving acetylene, formula CH2CH2, the simplest of the alkynes. tmpzr1t_l9r_go_relaxed.owl ethyne metabolism|acetylene metabolism|ethyne metabolic process UM-BBD_pathwayID:atl biological_process owl:Class GO:0045201 biolink:NamedThing maintenance of neuroblast polarity The maintenance of the apicobasal polarity of a neuroblast cell, a progenitor of the central nervous system. tmpzr1t_l9r_go_relaxed.owl maintenance of neuroblast cell polarity GO:0043344|GO:0043341 biological_process owl:Class GO:0045196 biolink:NamedThing establishment or maintenance of neuroblast polarity Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of a neuroblast cell, a progenitor of the central nervous system. tmpzr1t_l9r_go_relaxed.owl establishment and/or maintenance of neuroblast cell polarity GO:0043342|GO:0043339 biological_process owl:Class GO:0060567 biolink:NamedThing negative regulation of DNA-templated transcription, termination Any process that decreases the rate, frequency or extent of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription termination, DNA-dependent|negative regulation of termination of DNA-dependent transcription|negative regulation of DNA-dependent transcription, termination dph 2009-04-29T02:59:12Z biological_process owl:Class GO:0020035 biolink:NamedThing cytoadherence to microvasculature, mediated by symbiont protein The adherence of symbiont-infected erythrocytes to microvascular endothelium via symbiont proteins embedded in the membrane of the erythrocyte. tmpzr1t_l9r_go_relaxed.owl heterophilic cell adhesion involved in cytoadherence to microvasculature, mediated by parasite protein|parasite-protein-mediated cytoadherence to microvasculature|symbiont-protein-mediated cytoadherence to microvasculature|cytoadherence to microvasculature, mediated by parasite protein https://github.com/geneontology/go-ontology/issues/18814 GO:0043706 biological_process owl:Class GO:0044406 biolink:NamedThing adhesion of symbiont to host The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion to other organism involved in symbiotic interaction|adhesion to host|adhesion to other organism during symbiotic interaction|host adhesion|adhesion to symbiont This term can be used to annotate both symbiont and host organisms. Consider also annotating to biological process involved in interaction with symbiont ; GO:0051702. GO:0051825|GO:0051856 biological_process owl:Class GO:0140473 biolink:NamedThing telomere-nuclear envelope anchor activity The binding activity of a molecule that brings together the telomeric region of a chromosome and the inner nuclear membrane by interacting with both the telomere and the nuclear membrane, in order to establish and maintain the telomeric location. tmpzr1t_l9r_go_relaxed.owl nuclear envelope-telomere anchor activity|telomere-nuclear envelope anchoring activity https://github.com/geneontology/go-ontology/issues/19229 pg 2020-06-19T15:44:44Z molecular_function owl:Class GO:1990690 biolink:NamedThing Golgi medial cisterna-derived vesicle fusion with Golgi cis cisterna membrane The joining of the lipid bilayer membrane around a Golgi medial cisterna-derived vesicle to the lipid bilayer membrane around the Golgi cis cisterna. Such vesicles include COPI-coated transport vesicles involved in retrograde transport. tmpzr1t_l9r_go_relaxed.owl medial-Golgi cisterna-derived vesicle fusion with cis-Golgi cisterna membrane bhm 2015-03-12T09:47:03Z biological_process owl:Class GO:0048210 biolink:NamedThing Golgi vesicle fusion to target membrane The joining of the lipid bilayer membrane around a Golgi transport vesicle to the target lipid bilayer membrane. tmpzr1t_l9r_go_relaxed.owl dictyosome vesicle fusion to target membrane|Golgi-derived vesicle fusion to target membrane biological_process owl:Class GO:1904776 biolink:NamedThing regulation of protein localization to cell cortex Any process that modulates the frequency, rate or extent of protein localization to cell cortex. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to cell cortex An example is cye-1 in C. elegans, UniProt ID O01501 in PMID:17115027. es 2015-10-29T16:55:01Z biological_process owl:Class GO:1900719 biolink:NamedThing regulation of uterine smooth muscle relaxation Any process that modulates the frequency, rate or extent of uterine smooth muscle relaxation. tmpzr1t_l9r_go_relaxed.owl regulation of smooth muscle relaxation of the uterus jl 2012-05-24T03:12:26Z biological_process owl:Class GO:0015594 biolink:NamedThing ABC-type putrescine transporter activity Catalysis of the reaction: ATP + H2O + putrescine(out) -> ADP + phosphate + putrescine(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled putrescine transmembrane transporter activity|putrescine-importing ATPase activity|putrescine porter activity RHEA:29995|EC:7.6.2.16 molecular_function owl:Class GO:0015489 biolink:NamedThing putrescine transmembrane transporter activity Enables the transfer of putrescine from one side of a membrane to the other. Putrescine is 1,4-diaminobutane, the polyamine formed by decarboxylation of ornithine and the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071320 biolink:NamedThing cellular response to cAMP Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 3',5' cAMP|cellular response to cyclic AMP|cellular response to 3',5'-cAMP|cellular response to adenosine 3',5'-cyclophosphate mah 2009-12-10T05:12:15Z biological_process owl:Class GO:0008804 biolink:NamedThing carbamate kinase activity Catalysis of the reaction: ATP + NH3 + CO2 = ADP + carbamoyl phosphate. tmpzr1t_l9r_go_relaxed.owl carbamyl phosphokinase activity|ATP:carbamate phosphotransferase activity|carbamoyl phosphokinase activity|CKase activity EC:2.7.2.2|RHEA:10152|MetaCyc:CARBAMATE-KINASE-RXN molecular_function owl:Class GO:0019340 biolink:NamedThing dibenzofuran catabolic process The chemical reactions and pathways resulting in the breakdown of dibenzofuran, a substance composed of two benzene rings linked by one ether bond and one carbon-carbon bond. tmpzr1t_l9r_go_relaxed.owl dibenzofuran breakdown|dibenzofuran catabolism|dibenzofuran degradation MetaCyc:P662-PWY biological_process owl:Class GO:1904965 biolink:NamedThing regulation of vitamin E biosynthetic process Any process that modulates the frequency, rate or extent of vitamin E biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of vitamin E synthesis|regulation of tocopherol biosynthesis|regulation of alpha-tocopherol biosynthesis|regulation of alpha-tocopherol biosynthetic process|regulation of vitamin E formation|regulation of vitamin E biosynthesis|regulation of vitamin E anabolism|regulation of tocopherol biosynthetic process tb 2016-02-12T17:56:55Z biological_process owl:Class GO:1904704 biolink:NamedThing positive regulation of protein localization to adherens junction Any process that activates or increases the frequency, rate or extent of protein localization to adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localization in cell-cell adherens junction|up regulation of protein localization to cell-cell adherens junction|upregulation of protein localization in cell-cell adherens junction|up regulation of protein localisation to cell-cell adherens junction|positive regulation of protein localisation in cell-cell adherens junction|activation of protein localization in cell-cell adherens junction|up-regulation of protein localization to cell-cell adherens junction|up-regulation of protein localization in cell-cell adherens junction|upregulation of protein localization to cell-cell adherens junction|up-regulation of protein localisation to cell-cell adherens junction|upregulation of protein localisation to cell-cell adherens junction|upregulation of protein localisation in cell-cell adherens junction|activation of protein localisation to cell-cell adherens junction|activation of protein localization to cell-cell adherens junction|positive regulation of protein localisation to cell-cell adherens junction|up-regulation of protein localisation in cell-cell adherens junction|up regulation of protein localization in cell-cell adherens junction|activation of protein localisation in cell-cell adherens junction|up regulation of protein localisation in cell-cell adherens junction kmv 2015-10-01T15:12:02Z biological_process owl:Class GO:1902896 biolink:NamedThing terminal web assembly The aggregation, arrangement and bonding together of a set of components to form a terminal web. tmpzr1t_l9r_go_relaxed.owl terminal web formation kmv 2014-04-08T15:15:25Z biological_process owl:Class GO:0009786 biolink:NamedThing regulation of asymmetric cell division Any process that modulates the frequency, rate or extent of asymmetric cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016273 biolink:NamedThing arginine N-methyltransferase activity Enables the transfer of a methyl group from S-adenosyl-L-methionine to an amino group of an arginine residue. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008260 biolink:NamedThing 3-oxoacid CoA-transferase activity Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-oxoacid CoA dehydrogenase activity|3-ketoacid coenzyme A transferase activity|succinyl coenzyme A-acetoacetyl coenzyme A-transferase activity|3-oxo-CoA transferase activity|succinyl-CoA:3-ketoacid-CoA transferase activity|succinyl-CoA transferase activity|acetoacetate succinyl-CoA transferase activity|acetoacetyl coenzyme A-succinic thiophorase activity|3-ketoacid CoA-transferase activity|succinyl-CoA:3-oxo-acid CoA-transferase activity|3-oxoacid coenzyme A-transferase activity MetaCyc:3-OXOACID-COA-TRANSFERASE-RXN|EC:2.8.3.5|RHEA:25480|Reactome:R-HSA-74177 molecular_function owl:Class GO:0008410 biolink:NamedThing CoA-transferase activity Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-70713|EC:2.8.3.- molecular_function owl:Class GO:0102172 biolink:NamedThing 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NADH + O2 + H+ <=> 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NAD + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:58860|MetaCyc:RXN-11925 molecular_function owl:Class GO:0038137 biolink:NamedThing ERBB4-EGFR signaling pathway A series of molecular signals transmitted by a heterodimeric complex of the tyrosine kinase receptors EGFR (epidermal growth factor receptor/ERBB1) and ERBB4. The pathway begins with binding of a ligand to either cell surface receptor, or the dimeric receptor complex, and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ERBB4-EGFR signalling pathway|HER1-HER4 signaling pathway|ERBB1-ERBB4 signaling pathway bf 2012-03-30T11:30:30Z biological_process owl:Class GO:0009136 biolink:NamedThing purine nucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside diphosphate biosynthesis|purine nucleoside diphosphate formation|purine nucleoside diphosphate synthesis|purine nucleoside diphosphate anabolism biological_process owl:Class GO:0009133 biolink:NamedThing nucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside diphosphate formation|nucleoside diphosphate anabolism|nucleoside diphosphate synthesis|nucleoside diphosphate biosynthesis biological_process owl:Class GO:0043917 biolink:NamedThing ribose 1,5-bisphosphate isomerase activity Catalysis of the reaction: D-ribose 1,5-bisphosphate = D-ribulose 1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl ribose-1,5-bisphosphate isomerase activity EC:5.3.1.29|MetaCyc:RXN-8801|RHEA:32243 molecular_function owl:Class GO:0071057 biolink:NamedThing alphav-beta3 integrin-ADAM15 complex A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM15. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-ADAM15 complex mah 2009-11-03T04:00:14Z cellular_component owl:Class GO:1903964 biolink:NamedThing monounsaturated fatty acid metabolic process The chemical reactions and pathways involving monounsaturated fatty acid. tmpzr1t_l9r_go_relaxed.owl monounsaturated fatty acid metabolism For example, stearoyl-coenzyme A desaturase (Scd) catalyzes the desaturation of saturated fatty acids to monounsaturated fatty acids in mammals and yeast. pr 2015-02-25T20:35:48Z biological_process owl:Class GO:0033357 biolink:NamedThing L-arabinose biosynthetic process The chemical reactions and pathways resulting in the formation of L-arabinose, arabino-pentose. tmpzr1t_l9r_go_relaxed.owl L-arabinose synthesis|L-arabinose biosynthesis|L-arabinose anabolism|L-arabinose formation biological_process owl:Class GO:0018279 biolink:NamedThing protein N-linked glycosylation via asparagine The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked glycosylation via asparagine biological_process owl:Class GO:1902961 biolink:NamedThing positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process Any process that activates or increases the frequency, rate or extent of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of aspartate protease activity involved in amyloid precursor protein breakdown|activation of aspartic protease activity involved in amyloid precursor protein degradation|up-regulation of aspartyl protease activity involved in amyloid precursor protein degradation|activation of carboxyl protease activity involved in amyloid precursor protein catabolic process|positive regulation of aspartic protease activity involved in amyloid precursor protein degradation|up regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|upregulation of aspartate protease activity involved in APP catabolic process|upregulation of aspartic protease activity involved in amyloid precursor protein catabolism|activation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|activation of aspartic-type endopeptidase activity involved in APP catabolism|up-regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|positive regulation of aspartic protease activity involved in amyloid precursor protein breakdown|up regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|activation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|up regulation of aspartate protease activity involved in APP catabolic process|up-regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|up-regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|up-regulation of aspartic protease activity involved in amyloid precursor protein degradation|upregulation of aspartyl protease activity involved in APP catabolic process|upregulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|up regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|up regulation of aspartate protease activity involved in amyloid precursor protein breakdown|activation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|up regulation of aspartic endopeptidase activity involved in APP catabolism|up regulation of aspartyl protease activity involved in amyloid precursor protein degradation|positive regulation of aspartate protease activity involved in amyloid precursor protein degradation|upregulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|upregulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|up-regulation of aspartyl protease activity involved in APP catabolism|activation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|up-regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|upregulation of aspartic protease activity involved in amyloid precursor protein catabolic process|upregulation of aspartic protease activity involved in APP catabolism|upregulation of carboxyl protease activity involved in amyloid precursor protein catabolism|up-regulation of aspartic-type endopeptidase activity involved in APP catabolic process|up-regulation of carboxyl protease activity involved in APP catabolism|activation of aspartic protease activity involved in APP catabolism|positive regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|positive regulation of carboxyl protease activity involved in APP catabolism|activation of aspartic endopeptidase activity involved in APP catabolic process|activation of carboxyl protease activity involved in amyloid precursor protein catabolism|upregulation of aspartic-type endopeptidase activity involved in APP catabolism|positive regulation of carboxyl protease activity involved in amyloid precursor protein degradation|activation of aspartic-type endopeptidase activity involved in APP catabolic process|up regulation of aspartic-type endopeptidase activity involved in APP catabolic process|up-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|activation of aspartic protease activity involved in APP catabolic process|positive regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|activation of aspartate protease activity involved in APP catabolism|up regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|up regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|upregulation of aspartate protease activity involved in amyloid precursor protein catabolic process|activation of aspartyl protease activity involved in amyloid precursor protein degradation|positive regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|up regulation of aspartic protease activity involved in amyloid precursor protein breakdown|upregulation of aspartic protease activity involved in APP catabolic process|up-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|positive regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|up regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|activation of carboxyl protease activity involved in APP catabolism|activation of aspartate protease activity involved in amyloid precursor protein breakdown|positive regulation of aspartic protease activity involved in APP catabolism|up-regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|up regulation of aspartate protease activity involved in amyloid precursor protein catabolism|positive regulation of aspartate protease activity involved in amyloid precursor protein catabolism|up-regulation of aspartic protease activity involved in APP catabolism|up regulation of carboxyl protease activity involved in APP catabolic process|positive regulation of aspartic endopeptidase activity involved in APP catabolism|upregulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|positive regulation of aspartic protease activity involved in amyloid precursor protein catabolism|activation of aspartate protease activity involved in amyloid precursor protein degradation|up regulation of carboxyl protease activity involved in amyloid precursor protein degradation|up-regulation of aspartic-type endopeptidase activity involved in APP catabolism|positive regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|activation of aspartyl protease activity involved in amyloid precursor protein catabolism|upregulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|upregulation of aspartic endopeptidase activity involved in APP catabolism|activation of carboxyl protease activity involved in APP catabolic process|up-regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|upregulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|activation of carboxyl protease activity involved in amyloid precursor protein degradation|up regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|positive regulation of aspartyl protease activity involved in APP catabolic process|activation of aspartate protease activity involved in amyloid precursor protein catabolism|up regulation of aspartate protease activity involved in amyloid precursor protein degradation|up regulation of aspartyl protease activity involved in APP catabolism|upregulation of carboxyl protease activity involved in APP catabolic process|positive regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|positive regulation of aspartate protease activity involved in APP catabolic process|up-regulation of aspartate protease activity involved in amyloid precursor protein catabolism|activation of carboxyl protease activity involved in amyloid precursor protein breakdown|up regulation of aspartic protease activity involved in amyloid precursor protein catabolism|up regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|up-regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|activation of aspartic protease activity involved in amyloid precursor protein breakdown|activation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|activation of aspartyl protease activity involved in APP catabolism|up regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|upregulation of aspartate protease activity involved in amyloid precursor protein breakdown|up regulation of aspartic endopeptidase activity involved in APP catabolic process|up regulation of aspartate protease activity involved in APP catabolism|up-regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|up regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|positive regulation of aspartic-type endopeptidase activity involved in APP catabolism|activation of aspartic endopeptidase activity involved in APP catabolism|positive regulation of aspartate protease activity involved in APP catabolism|up-regulation of aspartic protease activity involved in amyloid precursor protein catabolism|up regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|upregulation of aspartyl protease activity involved in APP catabolism|up-regulation of aspartate protease activity involved in APP catabolic process|up regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|activation of aspartate protease activity involved in APP catabolic process|positive regulation of aspartate protease activity involved in amyloid precursor protein breakdown|positive regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|upregulation of aspartate protease activity involved in amyloid precursor protein catabolism|up-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|up regulation of aspartyl protease activity involved in APP catabolic process|up regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|up regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|up-regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|upregulation of aspartyl protease activity involved in amyloid precursor protein degradation|upregulation of aspartate protease activity involved in APP catabolism|up regulation of aspartic protease activity involved in APP catabolic process|upregulation of aspartyl protease activity involved in amyloid precursor protein breakdown|positive regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|upregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|up-regulation of aspartate protease activity involved in amyloid precursor protein degradation|up regulation of aspartic-type endopeptidase activity involved in APP catabolism|up regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|up-regulation of carboxyl protease activity involved in amyloid precursor protein degradation|up-regulation of aspartyl protease activity involved in APP catabolic process|up-regulation of aspartate protease activity involved in APP catabolism|activation of aspartic protease activity involved in amyloid precursor protein catabolism|upregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|activation of aspartyl protease activity involved in amyloid precursor protein catabolic process|up-regulation of aspartic endopeptidase activity involved in APP catabolism|up-regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|positive regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|upregulation of carboxyl protease activity involved in APP catabolism|activation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|upregulation of aspartic-type endopeptidase activity involved in APP catabolic process|up-regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|positive regulation of aspartyl protease activity involved in amyloid precursor protein degradation|upregulation of carboxyl protease activity involved in amyloid precursor protein degradation|upregulation of aspartate protease activity involved in amyloid precursor protein degradation|activation of aspartyl protease activity involved in APP catabolic process|up regulation of carboxyl protease activity involved in APP catabolism|activation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|upregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|activation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|activation of aspartyl protease activity involved in amyloid precursor protein breakdown|activation of aspartate protease activity involved in amyloid precursor protein catabolic process|positive regulation of carboxyl protease activity involved in APP catabolic process|upregulation of aspartyl protease activity involved in amyloid precursor protein catabolism|positive regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|upregulation of aspartic protease activity involved in amyloid precursor protein breakdown|positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|up-regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process|upregulation of aspartic protease activity involved in amyloid precursor protein degradation|up-regulation of carboxyl protease activity involved in APP catabolic process|positive regulation of aspartic endopeptidase activity involved in APP catabolic process|positive regulation of aspartic protease activity involved in APP catabolic process|up regulation of aspartic protease activity involved in amyloid precursor protein degradation|positive regulation of aspartyl protease activity involved in APP catabolism|activation of aspartic protease activity involved in amyloid precursor protein catabolic process|upregulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|up-regulation of aspartic protease activity involved in APP catabolic process|upregulation of aspartic endopeptidase activity involved in APP catabolic process|up-regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|up regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|positive regulation of aspartic-type endopeptidase activity involved in APP catabolic process|up-regulation of aspartic endopeptidase activity involved in APP catabolic process|positive regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|up regulation of aspartic protease activity involved in APP catabolism|up-regulation of aspartic protease activity involved in amyloid precursor protein breakdown|positive regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|upregulation of carboxyl protease activity involved in amyloid precursor protein breakdown sjp 2014-05-06T09:07:17Z biological_process owl:Class GO:0019552 biolink:NamedThing glutamate catabolic process via 2-hydroxyglutarate The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-hydroxyglutarate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glutamate fermentation via 2-hydroxyglutarate MetaCyc:P162-PWY biological_process owl:Class GO:0019670 biolink:NamedThing anaerobic glutamate catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glutamate fermentation biological_process owl:Class GO:1905615 biolink:NamedThing positive regulation of developmental vegetative growth Any process that activates or increases the frequency, rate or extent of developmental vegetative growth. tmpzr1t_l9r_go_relaxed.owl up-regulation of developmental vegetative growth|upregulation of developmental vegetative growth|activation of developmental vegetative growth|up regulation of developmental vegetative growth pga 2016-10-28T11:45:28Z biological_process owl:Class GO:0042022 biolink:NamedThing interleukin-12 receptor complex A protein complex that binds interleukin-12 and that consists of, at a minimum, a dimeric interleukin and its two receptor subunits as well as optional additional kinase subunits. tmpzr1t_l9r_go_relaxed.owl IL12RB1-IL12RB2 complex|IL-12 receptor complex cellular_component owl:Class GO:0004861 biolink:NamedThing cyclin-dependent protein serine/threonine kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl cyclin dependent protein kinase inhibitor activity|cyclin-dependent protein kinase inhibitor activity|cyclin dependent kinase inhibitor|cyclin-dependent kinase inhibitor|CDK inhibitor Reactome:R-HSA-69562|Reactome:R-HSA-187934 molecular_function owl:Class GO:0051696 biolink:NamedThing pointed-end actin filament uncapping The removal of capping protein from the pointed (or minus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl pointed-end F-actin uncapping|minus-end actin filament uncapping|minus end actin filament uncapping|minus-end F-actin uncapping|minus end F-actin uncapping|pointed end F-actin uncapping|pointed end actin filament uncapping biological_process owl:Class GO:0051695 biolink:NamedThing actin filament uncapping The removal of capping protein from the end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl F-actin uncapping biological_process owl:Class GO:0030720 biolink:NamedThing oocyte localization involved in germarium-derived egg chamber formation Directed movement of the oocyte, following its specification, from its original central position in the cyst to a posterior position relative to the nurse cells of the egg chamber, and its maintenance in this posterior location. This is the first sign of anterior-posterior asymmetry in the developing egg chamber. tmpzr1t_l9r_go_relaxed.owl oogenesis, oocyte localization|oocyte positioning during oogenesis|oocyte localization during germarium-derived egg chamber formation|oogenesis, establishment and maintenance of oocyte localization|establishment and maintenance of oocyte localization in egg chamber|oocyte localisation involved in germarium-derived egg chamber formation|establishment and maintenance of oocyte position during oogenesis|oocyte localization during oogenesis biological_process owl:Class GO:0052649 biolink:NamedThing coenzyme gamma-F420-2 metabolic process The chemical reactions and pathways involving coenzyme gamma-F420-2 (F420-2; coenzyme F420; N-{N-[O-(7,8-didemethyl-8-hydroxy-5-deazariboflavin phospho)-(S)-lactyl]-gamma-L-glutamyl}-L-glutamate), the amide obtained by formal condensation of the carboxylic acid group of F420-0 with the amino group of L-gamma-glutamyl-L-glutamic acid. tmpzr1t_l9r_go_relaxed.owl coenzyme F420 metabolism|coenzyme gamma-F420-2 metabolism|F420-2 metabolism|F420-2 metabolic process|coenzyme F420 metabolic process ai 2010-09-22T04:32:35Z biological_process owl:Class GO:0019391 biolink:NamedThing glucuronoside catabolic process The chemical reactions and pathways resulting in the breakdown of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue. tmpzr1t_l9r_go_relaxed.owl glucuronide catabolism|glucuronoside catabolism|glucuronide catabolic process|glucuronoside breakdown|glucuronoside degradation MetaCyc:GLUCUROCAT-PWY biological_process owl:Class GO:0044275 biolink:NamedThing cellular carbohydrate catabolic process The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular carbohydrate degradation|cellular carbohydrate breakdown|cellular carbohydrate catabolism biological_process owl:Class GO:0071305 biolink:NamedThing cellular response to vitamin D Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to calciferol|cellular response to cholecalciferol|cellular response to ergocalciferol mah 2009-12-10T04:35:37Z biological_process owl:Class GO:0033280 biolink:NamedThing response to vitamin D Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus. tmpzr1t_l9r_go_relaxed.owl response to cholecalciferol|response to ergocalciferol|response to calciferol biological_process owl:Class GO:0071363 biolink:NamedThing cellular response to growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:05:07Z biological_process owl:Class GO:0036007 biolink:NamedThing scintillon A body present in the cytoplasm of some dinoflagellates, which is the source of bioluminescence; emits light on acidification in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl bf 2011-09-21T03:04:02Z cellular_component owl:Class GO:0052771 biolink:NamedThing coenzyme F390-G hydrolase activity Catalysis of the reaction: coenzyme F390-G = GMP + coenzyme F420. tmpzr1t_l9r_go_relaxed.owl 8-hydroxyguanylylated-coenzyme F420 hydrolase activity ai 2011-10-03T12:00:00Z molecular_function owl:Class GO:0030162 biolink:NamedThing regulation of proteolysis Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. tmpzr1t_l9r_go_relaxed.owl regulation of peptidolysis biological_process owl:Class GO:2001024 biolink:NamedThing negative regulation of response to drug Any process that stops, prevents or reduces the frequency, rate or extent of response to drug. tmpzr1t_l9r_go_relaxed.owl negative regulation of drug resistance|negative regulation of drug susceptibility/resistance yaf 2011-08-19T01:47:24Z biological_process owl:Class GO:0033022 biolink:NamedThing cyclopentanol catabolic process The chemical reactions and pathways resulting in the breakdown of cyclopentanol. tmpzr1t_l9r_go_relaxed.owl cyclopentanol breakdown|cyclopentanol degradation|cyclopentanol catabolism biological_process owl:Class GO:0000716 biolink:NamedThing transcription-coupled nucleotide-excision repair, DNA damage recognition The identification of lesions on the actively transcribed strand of the DNA duplex as well as a small subset of lesions not recognized by the general nucleotide-excision repair pathway. tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair, DNA damage recognition biological_process owl:Class GO:0050648 biolink:NamedThing 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding Binding to 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. tmpzr1t_l9r_go_relaxed.owl 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-eicosatetraenoic acid binding molecular_function owl:Class GO:1900385 biolink:NamedThing negative regulation of flavonol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of flavonol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of flavonol biosynthetic process|down-regulation of flavonol biosynthetic process|downregulation of flavonol biosynthetic process|inhibition of flavonol biosynthetic process tb 2012-04-17T10:22:59Z biological_process owl:Class GO:1903643 biolink:NamedThing positive regulation of recombination hotspot binding Any process that activates or increases the frequency, rate or extent of recombination hotspot binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA binding, recombination hotspot|upregulation of recombination hotspot binding|upregulation of DNA binding, recombination hotspot|up regulation of recombination hotspot binding|up-regulation of recombination hotspot binding|activation of DNA binding, recombination hotspot|activation of recombination hotspot binding|positive regulation of DNA binding, recombination hotspot|up regulation of DNA binding, recombination hotspot al 2014-11-21T12:02:31Z biological_process owl:Class GO:1903642 biolink:NamedThing regulation of recombination hotspot binding Any process that modulates the frequency, rate or extent of recombination hotspot binding. tmpzr1t_l9r_go_relaxed.owl regulation of DNA binding, recombination hotspot al 2014-11-21T12:02:22Z biological_process owl:Class GO:0043447 biolink:NamedThing alkane biosynthetic process The chemical reactions and pathways resulting in the formation of an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2. tmpzr1t_l9r_go_relaxed.owl alkane biosynthesis|alkane anabolism|alkane synthesis|alkane formation biological_process owl:Class GO:1990671 biolink:NamedThing vesicle fusion with Golgi medial cisterna membrane The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi medial cisterna. This can involve anterograde or retrograde transport vesicles. tmpzr1t_l9r_go_relaxed.owl bhm 2015-03-02T11:31:01Z biological_process owl:Class GO:0060077 biolink:NamedThing inhibitory synapse A synapse in which an action potential in the presynaptic cell reduces the probability of an action potential occurring in the postsynaptic cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Inhibitory_postsynaptic_potential cellular_component owl:Class GO:0070648 biolink:NamedThing formin-nucleated actin cable An actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. In fungal cells, myosin motors transport cargo along actin cables toward sites of polarized cell growth; actin cables may play a similar role in pollen tube growth. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-12T02:09:57Z cellular_component owl:Class GO:0097518 biolink:NamedThing parallel actin filament bundle An actin filament bundle in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:42:17Z cellular_component owl:Class GO:0110052 biolink:NamedThing toxic metabolite repair A cellular process that, through single- or multi-step enzymatic reactions, repairs toxic endogenous compounds, formed as by-products of primary metabolism, by converting them into useful metabolites. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-08T15:19:16Z biological_process owl:Class GO:0002292 biolink:NamedThing T cell differentiation involved in immune response The process in which an antigenically naive T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells. tmpzr1t_l9r_go_relaxed.owl T cell development involved in immune response|T cell differentiation during immune response|T-cell differentiation during immune response|T lymphocyte differentiation during immune response|T-lymphocyte differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0072381 biolink:NamedThing positive regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin involved in neural crest cell differentiation. The Wnt signaling pathway is the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl positive regulation of Wnt receptor signaling pathway through beta-catenin involved in neural crest cell differentiation|positive regulation of canonical Wnt receptor signalling pathway involved in neural crest cell differentiation|positive regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|positive regulation of canonical Wnt-activated signaling pathway involved in neural crest cell differentiation mah 2010-11-24T03:10:15Z biological_process owl:Class GO:0072335 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation Any process that modulates the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin involved in neural crest cell differentiation. The Wnt signaling pathway is the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt-activated signaling pathway involved in neural crest cell differentiation|regulation of canonical Wnt receptor signalling pathway involved in neural crest cell differentiation|regulation of Wnt receptor signaling pathway through beta-catenin involved in neural crest cell differentiation|regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation mah 2010-11-03T03:12:38Z biological_process owl:Class GO:1903535 biolink:NamedThing negative regulation of lactose biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of lactose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of lactose biosynthesis|down-regulation of lactose biosynthesis|inhibition of lactose anabolism|downregulation of lactose anabolism|down regulation of lactose formation|downregulation of lactose formation|negative regulation of lactose anabolism|down regulation of lactose biosynthetic process|down-regulation of lactose synthesis|downregulation of lactose biosynthesis|down-regulation of lactose biosynthetic process|downregulation of lactose synthesis|negative regulation of lactose formation|down-regulation of lactose anabolism|down regulation of lactose synthesis|down-regulation of lactose formation|down regulation of lactose anabolism|inhibition of lactose formation|inhibition of lactose synthesis|downregulation of lactose biosynthetic process|inhibition of lactose biosynthesis|negative regulation of lactose synthesis|negative regulation of lactose biosynthesis|inhibition of lactose biosynthetic process mr 2014-10-08T16:26:14Z biological_process owl:Class GO:0003158 biolink:NamedThing endothelium development The process whose specific outcome is the progression of an endothelium over time, from its formation to the mature structure. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-01T12:50:57Z biological_process owl:Class GO:0045699 biolink:NamedThing positive regulation of synergid differentiation Any process that activates or increases the frequency, rate or extent of synergid cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of synergid differentiation|stimulation of synergid differentiation|activation of synergid differentiation|up-regulation of synergid differentiation|positive regulation of synergid cell differentiation|upregulation of synergid differentiation biological_process owl:Class GO:1901977 biolink:NamedThing negative regulation of cell cycle checkpoint Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl downregulation of cell cycle checkpoint|down regulation of cell cycle checkpoint|negative regulation of G1/S transition checkpoint|inhibition of cell cycle checkpoint|negative regulation of G1/S checkpoint|down-regulation of cell cycle checkpoint Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of checkpoint (i.e mitotic spindle or DNA damage etc). jl 2013-03-06T15:10:29Z GO:2001048 biological_process owl:Class GO:0043084 biolink:NamedThing penile erection The hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Erection#Penile_erection biological_process owl:Class GO:0030860 biolink:NamedThing regulation of polarized epithelial cell differentiation Any process that modulates the frequency, rate or extent of polarized epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120072 biolink:NamedThing positive regulation of pyloric antrum smooth muscle contraction Any process that increases the frequency, rate or extent of any pyloric antrum smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:32:56Z biological_process owl:Class GO:1990778 biolink:NamedThing protein localization to cell periphery A process in which a protein is transported to, or maintained in, the cell periphery. tmpzr1t_l9r_go_relaxed.owl 2015-06-18T22:37:39Z biological_process owl:Class GO:0004383 biolink:NamedThing guanylate cyclase activity Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl receptor guanylate cyclase activity|GTP diphosphate-lyase (cyclizing; 3',5'-cyclic-GMP-forming) activity|guanyl cyclase activity|GTP diphosphate-lyase (cyclizing) activity|guanylyl cyclase activity Reactome:R-HSA-74885|MetaCyc:GUANYLCYC-RXN|Reactome:R-HSA-392152|EC:4.6.1.2|RHEA:13665 molecular_function owl:Class GO:0016849 biolink:NamedThing phosphorus-oxygen lyase activity Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. tmpzr1t_l9r_go_relaxed.owl EC:4.6.-.- molecular_function owl:Class GO:0055065 biolink:NamedThing metal ion homeostasis Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072748 biolink:NamedThing cellular response to tacrolimus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tacrolimus (FK506) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to tacrolimus hydrate|cellular response to FK506 mah 2012-08-31T12:34:32Z biological_process owl:Class GO:1990972 biolink:NamedThing multimerin complex Glycoprotein complex of the C1q/TNF superfamily involved in cell adhesion. A homotrimer that will combine to form supramolecular Multimerin structures. tmpzr1t_l9r_go_relaxed.owl Elastic microfibrillar interface 4 complex|Platelet glycoprotein Ia* complex|Multimerin-2 complex|EMILIN-4 complex|p155 complex|EMILIN-3 complex|Elastic microfibrillar interface 3 complex|Multimerin-1 complex An example of this is Multimerin-1 in human (Q13201) in PMID:9454761. bhm 2016-06-21T14:49:42Z cellular_component owl:Class GO:0098637 biolink:NamedThing protein complex involved in cell-matrix adhesion Any protein complex that is capable of carrying out some part of the process of cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061716 biolink:NamedThing miRNA export from nucleus The directed movement of a processed miRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dph 2015-06-29T08:54:41Z biological_process owl:Class GO:0097064 biolink:NamedThing ncRNA export from nucleus The directed movement of a non-coding RNA transcript (ncRNA) from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl non-coding RNA export from nucleus pr 2011-06-08T12:34:34Z biological_process owl:Class GO:0051354 biolink:NamedThing negative regulation of oxidoreductase activity Any process that stops or reduces the rate of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. tmpzr1t_l9r_go_relaxed.owl inhibition of oxidoreductase activity|downregulation of oxidoreductase activity|oxidoreductase inhibitor|down regulation of oxidoreductase activity|down-regulation of oxidoreductase activity biological_process owl:Class GO:1903307 biolink:NamedThing positive regulation of regulated secretory pathway Any process that activates or increases the frequency, rate or extent of regulated secretory pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of regulated secretory pathway|up-regulation of regulated secretory pathway|upregulation of regulated secretory pathway|activation of regulated secretory pathway An example of this is protein domain-specific expression of Synaptotagmin 1 in rat (P21707) in PMID:12526776 inferred from mutant phenotype. pad 2014-08-18T10:05:10Z biological_process owl:Class GO:0045921 biolink:NamedThing positive regulation of exocytosis Any process that activates or increases the frequency, rate or extent of exocytosis. tmpzr1t_l9r_go_relaxed.owl stimulation of exocytosis|up regulation of exocytosis|activation of exocytosis|up-regulation of exocytosis|upregulation of exocytosis biological_process owl:Class GO:0004362 biolink:NamedThing glutathione-disulfide reductase (NADPH) activity Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH-glutathione reductase activity|NADPH-GSSG reductase activity|NADPH:oxidized-glutathione oxidoreductase activity|glutathione reductase activity|glutathione S-reductase activity|oxidized glutathione reduction|GSH reductase activity|glutathione:NADP+ oxidoreductase activity|glutathione-disulfide reductase activity|GSSG reductase activity|glutathione-disulphide reductase activity glutathione-disulfide reductase activity Reactome:R-HSA-71682|EC:1.8.1.7|MetaCyc:GLUTATHIONE-REDUCT-NADPH-RXN|Reactome:R-HSA-3323079|RHEA:11740 Note that this function was formerly EC:1.6.4.2. molecular_function owl:Class GO:0043003 biolink:NamedThing positive regulation of Golgi to plasma membrane CFTR protein transport Any process that activates or increases the frequency, rate or extent of transport of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of Golgi to plasma membrane CFTR protein transport|up regulation of Golgi to plasma membrane CFTR protein transport|stimulation of Golgi to plasma membrane CFTR protein transport|activation of Golgi to plasma membrane CFTR protein transport|upregulation of Golgi to plasma membrane CFTR protein transport biological_process owl:Class GO:0042999 biolink:NamedThing regulation of Golgi to plasma membrane CFTR protein transport Any process that modulates the frequency, rate or extent of transport of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071302 biolink:NamedThing cellular response to vitamin B2 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B2 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to riboflavin mah 2009-12-10T04:34:52Z biological_process owl:Class GO:0014001 biolink:NamedThing sclerenchyma cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sclerenchyma cell. A sclerenchyma cell is a plant cell with thick lignified walls, normally dead at maturity and specialized for structural strength. Includes fiber cells, that are greatly elongated; and sclereids, that are more isodiametric. Intermediate types exist. Cells may or may not be devoid of protoplasm at maturity. Cell form and size are variable. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050292 biolink:NamedThing steroid 9-alpha-monooxygenase activity Catalysis of the reaction: AH(2) + O(2) + pregna-4,9(11)-diene-3,20-dione = 9,11alpha-epoxypregn-4-ene-3,20-dione + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl steroid 9-alpha-hydroxylase activity|steroid 9a-monooxygenase activity|steroid 9alpha-monooxygenase activity|steroid,hydrogen-donor:oxygen oxidoreductase (9-epoxidizing)|steroid 9alpha-hydroxylase activity RHEA:19557|MetaCyc:STEROID-9-ALPHA-MONOOXYGENASE-RXN|EC:1.14.99.24|KEGG_REACTION:R04392 molecular_function owl:Class GO:0072341 biolink:NamedThing modified amino acid binding Binding to a modified amino acid. tmpzr1t_l9r_go_relaxed.owl amino acid derivative binding mah 2010-11-04T05:45:32Z molecular_function owl:Class GO:1904329 biolink:NamedThing negative regulation of myofibroblast contraction Any process that stops, prevents or reduces the frequency, rate or extent of myofibroblast contraction. tmpzr1t_l9r_go_relaxed.owl inhibition of myofibroblast contraction|negative regulation of MF contraction|downregulation of myofibroblast contraction|down-regulation of MFB contraction|inhibition of MF contraction|down-regulation of myofibroblast contraction|inhibition of MFB contraction|downregulation of MF contraction|down regulation of MF contraction|down regulation of myofibroblast contraction|down regulation of MFB contraction|down-regulation of MF contraction|negative regulation of MFB contraction|downregulation of MFB contraction sl 2015-06-11T15:30:35Z biological_process owl:Class GO:0019566 biolink:NamedThing arabinose metabolic process The chemical reactions and pathways involving arabinose, arabino-pentose. L-Arabinose occurs both free, for example in the heartwood of many conifers, and in the combined state, as a constituent of plant hemicelluloses, bacterial polysaccharides etc. D-arabinose is a constituent of arabinonucleosides. tmpzr1t_l9r_go_relaxed.owl arabinose metabolism biological_process owl:Class GO:0045873 biolink:NamedThing negative regulation of sevenless signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the sevenless signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of sev signaling pathway|negative regulation of sevenless signalling pathway|inhibition of sevenless signaling pathway|downregulation of sevenless signaling pathway|down regulation of sevenless signaling pathway|down-regulation of sevenless signaling pathway biological_process owl:Class GO:0019262 biolink:NamedThing N-acetylneuraminate catabolic process The chemical reactions and pathways resulting in the breakdown of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid. tmpzr1t_l9r_go_relaxed.owl N-acetylneuraminate degradation|N-acetylneuraminate breakdown|N-acetylneuraminate catabolism MetaCyc:P441-PWY biological_process owl:Class GO:0046213 biolink:NamedThing methyl ethyl ketone catabolic process The chemical reactions and pathways resulting in the breakdown of methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor. tmpzr1t_l9r_go_relaxed.owl methyl ethyl ketone breakdown|methyl ethyl ketone catabolism|methyl ethyl ketone degradation biological_process owl:Class GO:0018928 biolink:NamedThing methyl ethyl ketone metabolic process The chemical reactions and pathways involving methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor. It is used as a solvent and in making plastics, textiles and paints. tmpzr1t_l9r_go_relaxed.owl 2-butanone metabolism|MEK metabolism|MEK metabolic process|methyl ethyl ketone metabolism|2-butanone metabolic process UM-BBD_pathwayID:mek biological_process owl:Class GO:0010138 biolink:NamedThing pyrimidine ribonucleotide salvage The pathway by which pyrimidine bases or pyrimidine ribonucleosides from pyrimidine nucleotide breakdown are converted back to pyrimidine ribonucleotides. The salvage pathway is important where there is no de novo pyrimidine nucleotide biosynthesis. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY0-163 biological_process owl:Class GO:0070600 biolink:NamedThing fungal-type cell wall (1->3)-alpha-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in fungal-type cell walls, including those of ascospores. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall alpha-1,3-glucan formation|fungal-type cell wall 1,3-alpha-glucan anabolism|fungal-type cell wall 1,3-alpha-glucan formation|fungal-type cell wall alpha-1,3-glucan anabolism|fungal-type cell wall 1,3-alpha-glucan biosynthetic process|fungal-type cell wall 1,3-alpha-glucan biosynthesis|fungal-type cell wall alpha-1,3-glucan biosynthetic process|fungal-type cell wall alpha-1,3-glucan biosynthesis|fungal-type cell wall alpha-1,3-glucan synthesis|fungal-type cell wall 1,3-alpha-glucan synthesis mah 2009-04-28T04:09:48Z biological_process owl:Class GO:0070599 biolink:NamedThing fungal-type cell wall (1->3)-alpha-glucan metabolic process The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall 1,3-alpha-glucan metabolic process|ascospore wall alpha-1,3 glucan metabolic process|ascospore wall alpha-1,3 glucan metabolism|ascospore wall 1,3-alpha-glucan metabolism mah 2009-04-28T04:07:23Z biological_process owl:Class GO:0102704 biolink:NamedThing GDP-Man:Man2GlcNAc2-PP-dolichol alpha-1,6-mannosyltransferase activity Catalysis of the reaction: GDP-alpha-D-mannose(2-) + a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol <=> H+ + GDP(3-) + a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol. tmpzr1t_l9r_go_relaxed.owl RHEA:29519|EC:2.4.1.257|MetaCyc:RXN-5463 molecular_function owl:Class GO:0014889 biolink:NamedThing muscle atrophy A process, occurring in the muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Muscle_atrophy GO:0014889 should only be used for annotation when muscle atrophy is a normal physiological process and not a disease process. biological_process owl:Class GO:0043500 biolink:NamedThing muscle adaptation A process in which muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities. tmpzr1t_l9r_go_relaxed.owl muscle plasticity biological_process owl:Class GO:0006361 biolink:NamedThing transcription initiation from RNA polymerase I promoter Any process involved in the assembly of the RNA polymerase I preinitiation complex (PIC) at an RNA polymerase I promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. tmpzr1t_l9r_go_relaxed.owl transcription initiation from Pol I promoter|transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation. krc 2011-08-15T03:45:49Z GO:0001180 biological_process owl:Class GO:0006352 biolink:NamedThing DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. tmpzr1t_l9r_go_relaxed.owl DNA-dependent RNA polymerase complex assembly at promoter|transcription initiation factor activity|transcription initiation, DNA-dependent|initiation of DNA-dependent transcription|initiation of transcription, DNA-dependent|DNA-dependent transcription, initiation|transcription initiation from bacterial-type RNA polymerase promoter Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation. GO:0001123 biological_process owl:Class GO:0061929 biolink:NamedThing gamma-glutamylaminecyclotransferase activity Catalysis of the reaction: epsilon-(L-gamma-glutamyl)-L-lysine = L-lysine + 5-oxo-L-proline. tmpzr1t_l9r_go_relaxed.owl EC:4.3.2.8|RHEA:16961 dph 2017-08-29T14:57:39Z molecular_function owl:Class GO:0046481 biolink:NamedThing digalactosyldiacylglycerol synthase activity Catalysis of the reaction: 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + UDP-D-galactose = 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-1,2-diacyl-sn-glycerol + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:MGDG galactosyltransferase activity|UDP-galactose-dependent digalactosyldiacylglycerol synthase activity|DGDG synthase activity|UDP-galactose:3-(beta-D-galactosyl)-1,2-diacyl-sn-glycerol 6-alpha-galactosyltransferase activity|DGD2|DGD1|UDP-galactose-dependent DGDG synthase activity RHEA:10520|EC:2.4.1.241|KEGG_REACTION:R04469|Wikipedia:Digalactosyldiacylglycerol_synthase|MetaCyc:RXN-1225 molecular_function owl:Class GO:0071572 biolink:NamedThing histone H3-K56 deacetylation The modification of histone H3 by the removal of an acetyl group from lysine at position 56 of the histone. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:50:03Z biological_process owl:Class GO:0070932 biolink:NamedThing histone H3 deacetylation The modification of histone H3 by the removal of one or more acetyl groups. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-16T04:50:55Z biological_process owl:Class GO:1990036 biolink:NamedThing calcium ion import into sarcoplasmic reticulum The directed movement of calcium ions into a sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-07T23:22:27Z biological_process owl:Class GO:0008755 biolink:NamedThing O antigen polymerase activity Catalysis of the polymerization of o-antigen chains. O-antigens are tetra- and pentasaccharide repeat units of the cell walls of Gram-negative bacteria and are a component of lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl O-antigen polymerase activity molecular_function owl:Class GO:0034543 biolink:NamedThing 5-aminosalicylate dioxygenase activity Catalysis of the reaction: 5-aminosalicylate + O2 = cis-4-amino-6-carboxy-2-oxo-hexa-3,5-dienoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0809|EC:1.13.11.- molecular_function owl:Class GO:1903520 biolink:NamedThing negative regulation of mammary gland involution Any process that stops, prevents or reduces the frequency, rate or extent of mammary gland involution. tmpzr1t_l9r_go_relaxed.owl downregulation of mammary gland involution|inhibition of mammary gland involution|down regulation of mammary gland involution|down-regulation of mammary gland involution dph 2014-10-06T12:01:30Z biological_process owl:Class GO:0097281 biolink:NamedThing immune complex formation The process that gives rise to an immune complex. Immune complexes are clusters of antibodies bound to antigen, to which complement may also be fixed, and which may precipitate or remain in solution. Examples are the clumping of cells such as bacteria or red blood cells in the presence of an antibody, precipitation of a toxin after an antibody binds to it, and clumping of viral particles as a result of antibody binding to the virus. tmpzr1t_l9r_go_relaxed.owl antibody-mediated agglutination pr 2012-03-26T01:35:21Z biological_process owl:Class GO:0002086 biolink:NamedThing diaphragm contraction A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003011 biolink:NamedThing involuntary skeletal muscle contraction A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Involuntary skeletal muscle is skeletal muscle that is not under conscious control. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072238 biolink:NamedThing metanephric long nephron development The process whose specific outcome is the progression of a metanephric long nephron over time, from its formation to the mature structure. Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric juxtamedullary nephron development mah 2010-03-18T03:48:23Z biological_process owl:Class GO:0044320 biolink:NamedThing cellular response to leptin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leptin stimulus. Leptin is a hormone manufactured primarily in the adipocytes of white adipose tissue, and the level of circulating leptin is directly proportional to the total amount of fat in the body. It plays a key role in regulating energy intake and energy expenditure, including appetite and metabolism. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-14T02:21:32Z biological_process owl:Class GO:0032870 biolink:NamedThing cellular response to hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090128 biolink:NamedThing regulation of synapse maturation Any process that modulates the extent of synapse maturation, the process that organizes a synapse so that it attains its fully functional state. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:00:58Z biological_process owl:Class GO:0050256 biolink:NamedThing ribitol-5-phosphate 2-dehydrogenase activity Catalysis of the reaction: D-ribitol 5-phosphate + NAD(P)+ = D-ribulose 5-phosphate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl D-ribitol-5-phosphate:NAD(P)+ 2-oxidoreductase activity|dehydrogenase, ribitol 5-phosphate EC:1.1.1.137|MetaCyc:RIBITOL-5-PHOSPHATE-2-DEHYDROGENASE-RXN molecular_function owl:Class GO:0018084 biolink:NamedThing peptidyl-lactic acid biosynthetic process from peptidyl-serine The modification of N-terminal peptidyl-serine to lactic acid. tmpzr1t_l9r_go_relaxed.owl peptidyl-lactic acid formation from peptidyl-serine|peptidyl-lactic acid anabolism from peptidyl-serine|peptidyl-lactic acid synthesis from peptidyl-serine RESID:AA0186 biological_process owl:Class GO:0019381 biolink:NamedThing atrazine catabolic process The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide. tmpzr1t_l9r_go_relaxed.owl atrazine degradation|atrazine breakdown|atrazine catabolism MetaCyc:P141-PWY biological_process owl:Class GO:0034659 biolink:NamedThing isopropylmalate transport The directed movement of isopropylmalate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046851 biolink:NamedThing negative regulation of bone remodeling Any process that stops, prevents, or reduces the frequency, rate or extent of bone remodeling. tmpzr1t_l9r_go_relaxed.owl down-regulation of bone remodeling|down regulation of bone remodeling|inhibition of bone remodeling|downregulation of bone remodeling biological_process owl:Class GO:0046850 biolink:NamedThing regulation of bone remodeling Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050483 biolink:NamedThing IMP 5'-nucleotidase activity Catalysis of the reaction: 5'-IMP + H2O = inosine + phosphate. tmpzr1t_l9r_go_relaxed.owl IMP 5' nucleotidase activity|IMP-GMP specific 5'-nucleotidase activity RHEA:27718|MetaCyc:RXN-7607 molecular_function owl:Class GO:0008253 biolink:NamedThing 5'-nucleotidase activity Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate. tmpzr1t_l9r_go_relaxed.owl snake venom 5'-nucleotidase|5'-mononucleotidase activity|5'-AMPase|AMP phosphatase|AMPase|5' nucleotidase activity|adenosine monophosphatase|uridine 5'-nucleotidase|UMPase|5'-adenylic phosphatase|thimidine monophosphate nucleotidase|5'-AMP nucleotidase|5'-ribonucleotide phosphohydrolase activity|AMP phosphohydrolase|adenosine 5'-phosphatase Reactome:R-HSA-109387|Reactome:R-HSA-5694126|Reactome:R-HSA-109291|Reactome:R-HSA-109380|Reactome:R-HSA-109480|Reactome:R-HSA-109449|Reactome:R-HSA-109278|Reactome:R-HSA-109514|Reactome:R-HSA-109415|Reactome:R-HSA-8940074|Reactome:R-HSA-109470|Reactome:R-HSA-74248|MetaCyc:5-NUCLEOTID-RXN|Reactome:R-HSA-8940070|RHEA:12484|EC:3.1.3.5 molecular_function owl:Class GO:1903503 biolink:NamedThing ATPase inhibitor complex A protein complex which is capable of ATPase inhibitor activity. tmpzr1t_l9r_go_relaxed.owl An example of this is Mago in drome (P49028) in PMID:16170325 (inferred from direct assay). bhm 2014-09-30T13:55:37Z cellular_component owl:Class GO:0008963 biolink:NamedThing phospho-N-acetylmuramoyl-pentapeptide-transferase activity Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol. tmpzr1t_l9r_go_relaxed.owl UDP-MurNAc-pentapeptide phosphotransferase activity|phosphoacetylmuramoylpentapeptide translocase activity|UDP-MurNAc-Ala-gammaDGlu-Lys-DAla-DAla:undecaprenylphosphate transferase activity|UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C(55)-isoprenoid alcohol transferase activity|MraY transferase activity|UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C55-isoprenoid alcohol transferase activity|phosphoacetylmuramoylpentapeptidetransferase activity|phospho-N-acetylmuramoyl pentapeptide translocase activity|UDP-MurNAc-Ala-gamma-DGlu-Lys-DAla-DAla:undecaprenylphosphate transferase activity|UDP-MurAc(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala):undecaprenyl-phosphate phospho-N-acetylmuramoyl-pentapeptide-transferase activity|phospho-NAc-muramoyl-pentapeptide translocase (UMP) activity|phospho-MurNAc-pentapeptide transferase activity MetaCyc:RXN-8975|EC:2.7.8.13|RHEA:21920 Note that EC classifies all three 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity ; GO:0051992' and 'phospho-N-acetylmuramoyl-pentapeptide-transferase activity ; GO:0008963' under EC:2.7.8.13. molecular_function owl:Class GO:0102695 biolink:NamedThing UDP-glucose:cis-zeatin 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cis-zeatin <=> H+ + cis-zeatin-7-N-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4733 molecular_function owl:Class GO:0006561 biolink:NamedThing proline biosynthetic process The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl proline biosynthesis|proline anabolism|proline formation|proline synthesis MetaCyc:PWY-3341|MetaCyc:PROSYN-PWY biological_process owl:Class GO:0019730 biolink:NamedThing antimicrobial humoral response An immune response against microbes mediated through a body fluid. Examples of this process are seen in the antimicrobial humoral response of Drosophila melanogaster and Mus musculus. tmpzr1t_l9r_go_relaxed.owl GO:0019735|GO:0006960 biological_process owl:Class GO:0051707 biolink:NamedThing response to other organism Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. tmpzr1t_l9r_go_relaxed.owl GO:0042828|GO:0009613 biological_process owl:Class GO:0036006 biolink:NamedThing cellular response to macrophage colony-stimulating factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to M-CSF stimulus|cellular response to macrophage colony-stimulating factor bf 2011-09-20T04:23:19Z biological_process owl:Class GO:0050494 biolink:NamedThing GSI anchor biosynthetic process via N-glycyl-glycosylsphingolipidinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-glycine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a glycyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GSI anchor synthesis via N-glycyl-glycosylsphingolipidinositolethanolamine|GSI anchor formation via N-glycyl-glycosylsphingolipidinositolethanolamine|GSI anchor anabolism via N-glycyl-glycosylsphingolipidinositolethanolamine RESID:AA0165 biological_process owl:Class GO:0016584 biolink:NamedThing nucleosome positioning Ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another. tmpzr1t_l9r_go_relaxed.owl nucleosome spacing biological_process owl:Class GO:1904237 biolink:NamedThing positive regulation of substrate-dependent cell migration, cell attachment to substrate Any process that activates or increases the frequency, rate or extent of substrate-dependent cell migration, cell attachment to substrate. tmpzr1t_l9r_go_relaxed.owl upregulation of substrate-bound cell migration, cell attachment to substrate|up-regulation of substrate-bound cell migration, cell attachment to substrate|positive regulation of substrate-bound cell migration, cell attachment to substrate|activation of substrate-bound cell migration, cell attachment to substrate|up regulation of substrate-dependent cell migration, cell attachment to substrate|upregulation of substrate-dependent cell migration, cell attachment to substrate|up-regulation of substrate-dependent cell migration, cell attachment to substrate|activation of substrate-dependent cell migration, cell attachment to substrate|up regulation of substrate-bound cell migration, cell attachment to substrate pga 2015-05-15T13:30:11Z biological_process owl:Class GO:0044093 biolink:NamedThing positive regulation of molecular function Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. tmpzr1t_l9r_go_relaxed.owl jl 2009-04-21T04:11:06Z biological_process owl:Class GO:0042932 biolink:NamedThing chrysobactin transport The directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990454 biolink:NamedThing L-type voltage-gated calcium channel complex A type of voltage-dependent calcium channel responsible for excitation-contraction coupling of skeletal, smooth, and cardiac muscle. 'L' stands for 'long-lasting' referring to the length of activation. tmpzr1t_l9r_go_relaxed.owl cardiac muscle L-type voltage-gated calcium channel complex|skeletal muscle L-type voltage-gated calcium channel complex Examples of this are CACNA1S, CACNA2D1, CACNB1, CACNG1 in rabbit (UniProt symbol P07293, P13806, P19517 and P19518) in PMID:12946355 (inferred from direct assay). anm 2014-08-12T17:22:10Z cellular_component owl:Class GO:0045700 biolink:NamedThing regulation of spermatid nuclear differentiation Any process that modulates the frequency, rate or extent of spermatid nuclear differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019171 biolink:NamedThing 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity Catalysis of the reaction: a (3R)-3-hydroxyacyl-[acyl-carrier protein] = H2O + a trans-delta2-enoyl-acyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyacyl-ACP dehydratase activity|3-hydroxyacyl-[acyl-carrier protein] dehydratase activity EC:4.2.1.59|MetaCyc:3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|RHEA:13097 molecular_function owl:Class GO:0048351 biolink:NamedThing negative regulation of paraxial mesodermal cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of paraxial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl downregulation of paraxial mesodermal cell fate specification|inhibition of paraxial mesodermal cell fate specification|down regulation of paraxial mesodermal cell fate specification|down-regulation of paraxial mesodermal cell fate specification biological_process owl:Class GO:0048349 biolink:NamedThing regulation of paraxial mesodermal cell fate specification Any process that modulates the frequency, rate or extent of paraxial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005139 biolink:NamedThing interleukin-7 receptor binding Binding to an interleukin-7 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-7 receptor ligand|IL-7 molecular_function owl:Class GO:0031519 biolink:NamedThing PcG protein complex A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure. tmpzr1t_l9r_go_relaxed.owl Polycomb Group protein complex cellular_component owl:Class GO:0046137 biolink:NamedThing negative regulation of vitamin metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl negative regulation of vitamin metabolism|down-regulation of vitamin metabolic process|down regulation of vitamin metabolic process|inhibition of vitamin metabolic process|downregulation of vitamin metabolic process biological_process owl:Class GO:0019683 biolink:NamedThing glyceraldehyde-3-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of glyceraldehyde-3-phosphate, an important intermediate in glycolysis. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde-3-phosphate catabolism|glyceraldehyde-3-phosphate breakdown|glyceraldehyde 3-phosphate catabolic process|glyceraldehyde-3-phosphate degradation|glyceraldehyde 3-phosphate catabolism biological_process owl:Class GO:1901136 biolink:NamedThing carbohydrate derivative catabolic process The chemical reactions and pathways resulting in the breakdown of carbohydrate derivative. tmpzr1t_l9r_go_relaxed.owl carbohydrate derivative catabolism|carbohydrate derivative degradation|carbohydrate derivative breakdown bf 2012-07-12T04:05:31Z biological_process owl:Class GO:0106274 biolink:NamedThing NAD+-protein-arginine ADP-ribosyltransferase activity Catalysis of the reaction: NAD+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine. tmpzr1t_l9r_go_relaxed.owl EC:2.4.2.31|RHEA:19149 hjd 2020-07-02T01:37:02Z molecular_function owl:Class GO:0003956 biolink:NamedThing NAD(P)+-protein-arginine ADP-ribosyltransferase activity Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine. tmpzr1t_l9r_go_relaxed.owl NAD(P)(+)--arginine ADP-ribosyltransferase activity|mono(ADP-ribosyl)transferase activity|mono(ADPribosyl)transferase activity|NAD(+):L-arginine ADP-D-ribosyltransferase activity|peptidyl-arginine ADP-ribosylation activity|NAD(P)+:protein-L-arginine ADP-D-ribosyltransferase activity|ADP-ribosyltransferase activity|protein-arginine ADP-ribosyltransferase activity|NAD(P)+-arginine ADP-ribosyltransferase activity|NAD+:L-arginine ADP-D-ribosyltransferase activity|NAD(P)-arginine ADP-ribosyltransferase activity|NAD(P)+:L-arginine ADP-D-ribosyltransferase activity EC:2.4.2.31|Reactome:R-HSA-1972385|MetaCyc:2.4.2.31-RXN molecular_function owl:Class GO:1902135 biolink:NamedThing (+)-secoisolariciresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-secoisolariciresinol synthesis|(+)-secoisolariciresinol biosynthesis|(+)-secoisolariciresinol anabolism|(+)-secoisolariciresinol formation ms 2013-05-21T08:50:14Z biological_process owl:Class GO:0042975 biolink:NamedThing peroxisome proliferator activated receptor binding Binding to a peroxisome proliferator activated receptor, alpha, beta or gamma. tmpzr1t_l9r_go_relaxed.owl PPAR binding molecular_function owl:Class GO:0018255 biolink:NamedThing peptide cross-linking via S-glycyl-L-cysteine The formation of S-(peptidyl-glycyl)-peptidyl-cysteine cross-links by the formation of a thiolester between cysteine and the carboxy-terminal glycine of ubiquitin and other proteins. tmpzr1t_l9r_go_relaxed.owl RESID:AA0206 biological_process owl:Class GO:0035493 biolink:NamedThing SNARE complex assembly The aggregation, arrangement and bonding together of a set of components to form a SNARE complex, a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T02:50:52Z biological_process owl:Class GO:0061932 biolink:NamedThing negative regulation of erythrocyte enucleation Any process that decreases the frequency, rate or extent of erythrocyte enucleation. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T13:00:15Z biological_process owl:Class GO:0047041 biolink:NamedThing (S)-carnitine 3-dehydrogenase activity Catalysis of the reaction: (S)-carnitine + NAD(+) = 3-dehydrocarnitine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-carnitine dehydrogenase activity|(S)-carnitine:NAD+ oxidoreductase activity KEGG_REACTION:R01921|EC:1.1.1.254|MetaCyc:1.1.1.254-RXN|RHEA:11556 molecular_function owl:Class GO:1900811 biolink:NamedThing helvolic acid catabolic process The chemical reactions and pathways resulting in the breakdown of helvolic acid. tmpzr1t_l9r_go_relaxed.owl Fumigacin catabolic process|Fumigacin degradation|Fumigacin breakdown|helvolic acid breakdown|helvolic acid degradation|helvolic acid catabolism|Fumigacin catabolism di 2012-06-04T10:02:51Z biological_process owl:Class GO:0051567 biolink:NamedThing histone H3-K9 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 K9 methylation|histone H3K9me|histone lysine H3 K9 methylation biological_process owl:Class GO:0061647 biolink:NamedThing histone H3-K9 modification The modification of histone H3 at a lysine in position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl dph 2014-10-02T15:07:42Z biological_process owl:Class GO:0004748 biolink:NamedThing ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase activity|2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase activity EC:1.17.4.1|Reactome:R-HSA-111751|MetaCyc:RIBONUCLEOSIDE-DIP-REDUCTI-RXN|Reactome:R-HSA-111804|RHEA:23252 When thioredoxin is substituted for glutaredoxin in the reaction, annotate instead to 'ribonucleoside-diphosphate reductase, glutaredoxin disulfide as acceptor ; GO:0036175'. GO:0016959|GO:0016960|GO:0016961 molecular_function owl:Class GO:0061731 biolink:NamedThing ribonucleoside-diphosphate reductase activity Catalysis of the formation of 2'-deoxyribonucleoside diphosphate from ribonucleoside diphosphate, using either thioredoxin disulfide or glutaredoxin disulfide as an acceptor. tmpzr1t_l9r_go_relaxed.owl aerobic non-heme iron-dependent ribonucleotide reductase activity|class II ribonucleoside-diphosphate reductase activity|class II ribonucleotide reductase activity|ribonucleotide reductase activity|ribonucleoside 5'-diphosphate reductase activity|class I ribonucleotide reductase activity|class III ribonucleotide reductase activity|nucleoside diphosphate reductase activity|ribonucleotide diphosphate reductase activity|adenosylcobalamin-dependent ribonucleotide reductase activity|purine/pyrimidine nucleoside diphosphate reduction|anaerobic iron-sulfur-dependent ribonucleotide reductase activity|RNR dph 2015-08-24T07:25:59Z molecular_function owl:Class GO:2000732 biolink:NamedThing positive regulation of termination of RNA polymerase I transcription Any process that activates or increases the frequency, rate or extent of termination of RNA polymerase I transcription. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription termination from RNA polymerase I promoter|positive regulation of transcription termination from Pol I promoter|positive regulation of RNA polymerase I transcription termination dph 2011-06-10T08:43:48Z biological_process owl:Class GO:0047423 biolink:NamedThing N-methylhydantoinase (ATP-hydrolyzing) activity Catalysis of the reaction: N-methylhydantoin + ATP + 2 H(2)O = N-carbamoylsarcosine + ADP + 3 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl N-methylhydantoin amidohydrolase activity|N-methylhydantoinase activity|N-methylhydantoin hydrolase activity|methylhydantoin amidase activity|N-methylhydantoinase (ATP-hydrolysing)|N-methylimidazolidine-2,4-dione amidohydrolase (ATP-hydrolysing) EC:3.5.2.14|MetaCyc:3.5.2.14-RXN|RHEA:11720|Wikipedia:N-methylhydantoinase_(ATP-hydrolysing)|KEGG_REACTION:R03187 molecular_function owl:Class GO:2000093 biolink:NamedThing regulation of mesonephric nephron tubule epithelial cell differentiation Any process that modulates the frequency, rate or extent of mesonephric nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:12:25Z biological_process owl:Class GO:0072182 biolink:NamedThing regulation of nephron tubule epithelial cell differentiation Any process that modulates the frequency, rate or extent of nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:45:09Z biological_process owl:Class GO:0033867 biolink:NamedThing Fas-activated serine/threonine kinase activity Catalysis of the reaction: ATP + Fas-activated serine/threonine protein = ADP + Fas-activated serine/threonine phosphoprotein. tmpzr1t_l9r_go_relaxed.owl ATP:Fas-activated serine/threonine protein phosphotransferase activity|FASTK|FAST|STK10 MetaCyc:2.7.11.8-RXN|EC:2.7.11.8 molecular_function owl:Class GO:0140020 biolink:NamedThing DNA methyltransferase complex A protein complex that possesses DNA methyltransferase activity. tmpzr1t_l9r_go_relaxed.owl pg 2017-04-06T19:12:09Z cellular_component owl:Class GO:0034708 biolink:NamedThing methyltransferase complex A protein complex that possesses methyltransferase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018335 biolink:NamedThing protein succinylation The modification of a protein by the addition of a succinyl group (CO-CH2-CH2-CO) to an amino acid residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid succinylation biological_process owl:Class GO:0001101 biolink:NamedThing response to acid chemical Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. tmpzr1t_l9r_go_relaxed.owl response to acid|response to oxoanion|response to acid anion This term should be used to describe a response to a specific acid as a chemical. E.g., if an organism were responding to glutamate, then the response would be glutamate-specific; the organism is actually responding to the chemical structure of the anion portion of the dissociated acid. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. If annotating experiments where an acid is playing a role as a proton donor, please annotate to GO:0010447 'response to acidic pH' instead. biological_process owl:Class GO:0032093 biolink:NamedThing SAM domain binding Binding to a SAM (Sterile Alpha Motif) domain, which is a 70-amino acid protein sequence that participates in protein-protein, protein-lipid, and protein-RNA interactions and is conserved from lower to higher eukaryotes. tmpzr1t_l9r_go_relaxed.owl Sterile Alpha Motif domain binding molecular_function owl:Class GO:0072111 biolink:NamedThing cell proliferation involved in kidney development The multiplication or reproduction of cells, resulting in the expansion of the population in the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T10:48:45Z biological_process owl:Class GO:0003389 biolink:NamedThing retrograde extension The progression of a neuronal projection over time by the attachment of a part of the cell to an anchor and the subsequent migration of the cell body away from the anchor point. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:22:03Z biological_process owl:Class GO:0031175 biolink:NamedThing neuron projection development The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites). tmpzr1t_l9r_go_relaxed.owl neurite development|neurite formation|neurite growth|neurite outgrowth|neurite biosynthesis biological_process owl:Class GO:0060330 biolink:NamedThing regulation of response to interferon-gamma Any process that modulates the rate, frequency or extent of a response to interferon-gamma. Response to interferon gamma is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of response to type II interferon|regulation of response to gamma-interferon|regulation of response to immune interferon|regulation of response to type II IFN biological_process owl:Class GO:0098722 biolink:NamedThing asymmetric stem cell division Division of a stem cell during which it retains its identity and buds off a daughter cell with a new identity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017145 biolink:NamedThing stem cell division The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types. tmpzr1t_l9r_go_relaxed.owl stem cell renewal biological_process owl:Class GO:0103105 biolink:NamedThing 2-oxo-6-methylthiohexanoate aminotransferase activity Catalysis of the reaction: 2-oxo-6-methylthiohexanoate + a standard alpha amino acid <=> dihomomethionine + a 2-oxo carboxylate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4345 molecular_function owl:Class GO:0090379 biolink:NamedThing secondary cell wall biogenesis involved in seed trichome differentiation A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall of seed trichomes after cell expansion is complete. tmpzr1t_l9r_go_relaxed.owl secondary cell wall biosynthesis involved in seed trichome differentiation|seed trichome secondary wall biosynthesis The processes involved in the massive amount of secondary wall cellulose synthesis in seed trichomes continue to 30 DPA in Gossypium spp. tb 2010-09-15T02:24:34Z biological_process owl:Class GO:0047909 biolink:NamedThing galactolipid O-acyltransferase activity Catalysis of the reaction: 2 mono-beta-D-galactosyldiacylglycerol = acylmono-beta-D-galactosyl-diacylglycerol + mono-beta-D-galactosylacylglycerol. tmpzr1t_l9r_go_relaxed.owl galactolipid:galactolipid acyltransferase activity|mono-beta-D-galactosyldiacylglycerol:mono-beta-D-galactosyldiacylglycerol acyltransferase activity MetaCyc:GALACTOLIPID-O-ACYLTRANSFERASE-RXN|EC:2.3.1.134 molecular_function owl:Class GO:0047740 biolink:NamedThing cephalosporin-C transaminase activity Catalysis of the reaction: (7R)-7-(5-carboxylato-5-oxopentanamido)deacetylcephalosporanate + D-glutamate = 2-oxoglutarate + cephalosporin C. tmpzr1t_l9r_go_relaxed.owl cephalosporin C aminotransferase activity|cephalosporin-C:2-oxoglutarate aminotransferase activity|L-alanine:cephalosporin-C aminotransferase activity KEGG_REACTION:R03063|EC:2.6.1.74|RHEA:14553|MetaCyc:CEPHALOSPORIN-C-TRANSAMINASE-RXN molecular_function owl:Class GO:1905702 biolink:NamedThing regulation of inhibitory synapse assembly Any process that modulates the frequency, rate or extent of inhibitory synapse assembly. tmpzr1t_l9r_go_relaxed.owl regulation of inhibitory synapse formation tb 2016-11-16T18:55:32Z biological_process owl:Class GO:0006998 biolink:NamedThing nuclear envelope organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl nuclear envelope organisation|nuclear envelope organization and biogenesis biological_process owl:Class GO:0002290 biolink:NamedThing gamma-delta T cell activation involved in immune response The change in morphology and behavior of a gamma-delta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl gamma-delta T cell activation during immune response|gamma-delta T-cell activation during immune response|gamma-delta T lymphocyte activation during immune response|gamma-delta T-lymphocyte activation during immune response biological_process owl:Class GO:0003191 biolink:NamedThing coronary sinus valve formation The developmental process pertaining to the initial formation of the coronary sinus valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:09:04Z biological_process owl:Class GO:0003188 biolink:NamedThing heart valve formation The developmental process pertaining to the initial formation of a heart valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T12:20:15Z biological_process owl:Class GO:1902408 biolink:NamedThing mitotic cytokinesis, site selection Any cytokinesis, site selection that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl site selection involved in cytokinesis involved in mitotic cell cycle|site selection involved in cell cycle cytokinesis involved in mitotic cell cycle jl 2013-09-12T12:29:13Z biological_process owl:Class GO:0007105 biolink:NamedThing cytokinesis, site selection The process of marking the place where cytokinesis will occur. tmpzr1t_l9r_go_relaxed.owl site selection involved in cell cycle cytokinesis|site selection involved in cytokinesis GO:0010687 biological_process owl:Class GO:2000605 biolink:NamedThing positive regulation of secondary growth Any process that activates or increases the frequency, rate or extent of secondary growth. tmpzr1t_l9r_go_relaxed.owl tb 2011-04-15T10:30:49Z biological_process owl:Class GO:0045927 biolink:NamedThing positive regulation of growth Any process that activates or increases the rate or extent of growth, the increase in size or mass of all or part of an organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of growth|upregulation of growth|up regulation of growth|stimulation of growth|activation of growth biological_process owl:Class GO:0031549 biolink:NamedThing negative regulation of brain-derived neurotrophic factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of signaling via the brain-derived neurotrophic factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of brain-derived neurotrophic factor receptor signaling pathway|down regulation of brain-derived neurotrophic factor receptor signaling pathway|negative regulation of BDNF receptor signaling pathway|negative regulation of brain-derived neurotrophic factor receptor signalling pathway|negative regulation of BDNF receptor signalling pathway|down-regulation of brain-derived neurotrophic factor receptor signaling pathway|downregulation of brain-derived neurotrophic factor receptor signaling pathway biological_process owl:Class GO:0045707 biolink:NamedThing regulation of adult salivary gland boundary specification Any process that modulates the frequency, rate or extent of salivary gland determination in an adult organism. tmpzr1t_l9r_go_relaxed.owl regulation of adult salivary gland determination biological_process owl:Class GO:0061071 biolink:NamedThing urethra epithelium development The progression of the urethra epithelium over time from its initial formation to the mature structure. The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-12T08:36:53Z biological_process owl:Class GO:0034283 biolink:NamedThing syn-stemod-13(17)-ene synthase activity Catalysis of the reaction: 9-alpha-copalyl diphosphate = stemod-13(17)-ene + diphosphate. tmpzr1t_l9r_go_relaxed.owl exo-stemodene synthase activity|9alpha-copalyl-diphosphate diphosphate-lyase [stemod-13(17)-ene-forming] activity|stemodene synthase activity|syn-stemodene synthase activity|stemod-13(17)-ene synthase activity MetaCyc:RXN-9291|KEGG_REACTION:R09116|EC:4.2.3.34|RHEA:25556 molecular_function owl:Class GO:0048515 biolink:NamedThing spermatid differentiation The process whose specific outcome is the progression of a spermatid over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl spermatid cell differentiation biological_process owl:Class GO:1902705 biolink:NamedThing hexose catabolic process to butyrate The chemical reactions and pathways resulting in the breakdown of hexose to butyrate. tmpzr1t_l9r_go_relaxed.owl hexose degradation to butyrate|acidogenesis|hexose breakdown to butyrate|hexose catabolism to butyrate tb 2014-02-19T18:43:32Z GO:1990287 biological_process owl:Class GO:0098607 biolink:NamedThing methylselenocysteine deselenhydrase activity Catalysis of the reaction: Se-Methyl-L-selenocysteine + H2O => pyruvic acid + NH3 + Methaneselenol. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408539 dos 2014-04-16T11:24:12Z molecular_function owl:Class GO:2000493 biolink:NamedThing negative regulation of interleukin-18-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-18-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-18-mediated signalling pathway pr 2011-03-16T02:00:12Z biological_process owl:Class GO:1901297 biolink:NamedThing positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment. tmpzr1t_l9r_go_relaxed.owl activation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|positive regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment|positive regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|activation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|up regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|up-regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|up regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|positive regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|up-regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|upregulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|upregulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment vk 2012-08-21T09:06:59Z biological_process owl:Class GO:1905068 biolink:NamedThing positive regulation of canonical Wnt signaling pathway involved in heart development Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development. tmpzr1t_l9r_go_relaxed.owl activation of canonical Wnt-activated signaling pathway involved in heart development|upregulation of canonical Wnt-activated signaling pathway involved in heart development|up-regulation of canonical Wnt receptor signaling pathway involved in heart development|up-regulation of canonical Wnt receptor signalling pathway involved in heart development|up regulation of canonical Wnt receptor signaling pathway involved in heart development|upregulation of canonical Wnt receptor signalling pathway involved in heart development|up regulation of canonical Wnt-activated signaling pathway involved in heart development|up-regulation of canonical Wnt signaling pathway involved in heart development|upregulation of canonical Wnt signaling pathway involved in heart development|upregulation of canonical Wnt receptor signaling pathway involved in heart development|up-regulation of canonical Wnt-activated signaling pathway involved in heart development|positive regulation of canonical Wnt receptor signaling pathway involved in heart development|activation of canonical Wnt receptor signaling pathway involved in heart development|up regulation of canonical Wnt signaling pathway involved in heart development|positive regulation of canonical Wnt receptor signalling pathway involved in heart development|activation of canonical Wnt signaling pathway involved in heart development|activation of canonical Wnt receptor signalling pathway involved in heart development|up regulation of canonical Wnt receptor signalling pathway involved in heart development|positive regulation of canonical Wnt-activated signaling pathway involved in heart development bc 2016-03-21T12:47:15Z biological_process owl:Class GO:0009788 biolink:NamedThing negative regulation of abscisic acid-activated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of abscisic acid (ABA) signaling. tmpzr1t_l9r_go_relaxed.owl down regulation of abscisic acid mediated signaling|downregulation of abscisic acid mediated signaling|negative regulation of abscisic acid mediated signalling|inhibition of abscisic acid mediated signaling|down-regulation of abscisic acid mediated signaling|negative regulation of abscisic acid mediated signaling pathway biological_process owl:Class GO:1905958 biolink:NamedThing negative regulation of cellular response to alcohol Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to alcohol. tmpzr1t_l9r_go_relaxed.owl downregulation of cellular response to alcohol|inhibition of cellular response to alcohol|down regulation of cellular response to alcohol|down-regulation of cellular response to alcohol hbye 2017-02-22T12:03:08Z biological_process owl:Class GO:0008086 biolink:NamedThing light-activated voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel that is activated in response to light. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl light-activated voltage gated calcium channel activity|light-activated voltage-dependent calcium channel activity molecular_function owl:Class GO:0010461 biolink:NamedThing light-activated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens in response to a light stimulus. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990440 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress|ER stress-induced upregulation of transcription|up-regulation of transcription induced by ER stress|activation of transcription from RNA polymerase II promoter in response to ER stress|upregulation of Pol II transcription induced by ER stress|stimulation of transcription from RNA polymerase II promoter in response to ER stress|upregulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress bf 2014-07-31T12:56:54Z biological_process owl:Class GO:0031449 biolink:NamedThing regulation of slow-twitch skeletal muscle fiber contraction Any process that modulates the frequency, rate or extent of slow-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl regulation of slow-twitch skeletal muscle contraction biological_process owl:Class GO:1904684 biolink:NamedThing negative regulation of metalloendopeptidase activity Any process that stops, prevents or reduces the frequency, rate or extent of metalloendopeptidase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of metalloendoprotease activity|downregulation of metalloendoprotease activity|down regulation of metalloendoproteinase activity|down-regulation of metalloendopeptidase activity|inhibition of metalloendoprotease activity|negative regulation of metalloendoproteinase activity|downregulation of metalloendoproteinase activity|inhibition of metalloendoproteinase activity|downregulation of metalloendopeptidase activity|down regulation of metalloendopeptidase activity|negative regulation of metalloendoprotease activity|down regulation of metalloendoprotease activity|down-regulation of metalloendoproteinase activity|inhibition of metalloendopeptidase activity rph 2015-09-24T11:18:21Z biological_process owl:Class GO:1905939 biolink:NamedThing regulation of gonad development Any process that modulates the frequency, rate or extent of gonad development. tmpzr1t_l9r_go_relaxed.owl regulation of gonadogenesis hbye 2017-02-09T17:01:50Z biological_process owl:Class GO:0032570 biolink:NamedThing response to progesterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus. tmpzr1t_l9r_go_relaxed.owl response to progesterone stimulus biological_process owl:Class GO:0048545 biolink:NamedThing response to steroid hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to steroid hormone stimulus biological_process owl:Class GO:0102839 biolink:NamedThing 1-18:2-2-16:2-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.35|MetaCyc:RXN-8299 molecular_function owl:Class GO:0009207 biolink:NamedThing purine ribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside triphosphate degradation|purine ribonucleoside triphosphate catabolism|purine ribonucleoside triphosphate breakdown biological_process owl:Class GO:0043332 biolink:NamedThing mating projection tip The apex of the mating projection in unicellular fungi exposed to mating pheromone; site of polarized growth. tmpzr1t_l9r_go_relaxed.owl shmoo tip|conjugation tube tip cellular_component owl:Class GO:0051286 biolink:NamedThing cell tip The region at the end of the longest axis of a cylindrical or elongated cell. tmpzr1t_l9r_go_relaxed.owl cell end Note that this term differs from 'cell pole ; GO:0060187' in that it is applicable to the thin ends of elongated cells, such as the ends of axons or dendrites. cellular_component owl:Class GO:0036423 biolink:NamedThing hexaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) activity Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 3 isopentenyl diphosphate = 3 diphosphate + all-trans-hexaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl hexaprenyl diphosphate synthase activity|hexaprenyl pyrophosphate synthetase activity MetaCyc:TRANS-PENTAPRENYLTRANSFERASE-RXN|KEGG_REACTION:R09245|EC:2.5.1.83|RHEA:27559 bf 2013-09-16T12:22:10Z molecular_function owl:Class GO:0070435 biolink:NamedThing Shc-EGFR complex A protein complex that contains the epidermal growth factor receptor (EGFR) and the adaptor protein Shc, and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Shc-Egfr complex, EGF stimulated cellular_component owl:Class GO:0015412 biolink:NamedThing ABC-type molybdate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + molybdate(out) = ADP + phosphate + molybdate(in). tmpzr1t_l9r_go_relaxed.owl molybdate transporting ATPase activity|molybdate porter activity|molybdate ABC transporter|molybdate transmembrane-transporting ATPase activity|molybdate-transporting ATPase activity|ATPase-coupled molybdate transmembrane transporter activity EC:7.3.2.5|RHEA:22020|MetaCyc:3.6.3.29-RXN molecular_function owl:Class GO:0015098 biolink:NamedThing molybdate ion transmembrane transporter activity Enables the transfer of molybdate (MoO4 2-) ions from one side of a membrane to the other. Molybdate is the bivalent anion derived from molybdic acid. tmpzr1t_l9r_go_relaxed.owl molybdate transporter activity molecular_function owl:Class GO:0035562 biolink:NamedThing negative regulation of chromatin binding Any process that stops or reduces the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-19T10:29:06Z biological_process owl:Class GO:1904173 biolink:NamedThing regulation of histone demethylase activity (H3-K4 specific) Any process that modulates the frequency, rate or extent of histone demethylase activity (H3-K4 specific). tmpzr1t_l9r_go_relaxed.owl dph 2015-04-24T19:29:32Z biological_process owl:Class GO:0045805 biolink:NamedThing positive regulation of eclosion Any process that activates or increases the frequency, rate or extent of eclosion. tmpzr1t_l9r_go_relaxed.owl stimulation of eclosion|up regulation of eclosion|upregulation of eclosion|up-regulation of eclosion|activation of eclosion biological_process owl:Class GO:0038015 biolink:NamedThing positive regulation of insulin receptor signaling pathway by insulin receptor internalization Any process in which internalization of an insulin receptor activates or increases the frequency, rate or extent of the insulin receptor signaling pathway. Endocytosis of activated receptors can concentrate receptors within endosomes and allow the insulin receptor to phosphorylate substrates that are spatially distinct from those accessible at the plasma membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of insulin receptor signalling pathway by insulin receptor internalization bf 2011-06-23T04:20:11Z biological_process owl:Class GO:0038016 biolink:NamedThing insulin receptor internalization A receptor-mediated endocytosis process that results in the movement of an insulin receptor from the plasma membrane to the inside of the cell. tmpzr1t_l9r_go_relaxed.owl insulin receptor endocytosis bf 2011-06-23T04:24:52Z biological_process owl:Class GO:0045156 biolink:NamedThing electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis. tmpzr1t_l9r_go_relaxed.owl cytochrome|cytochrome bc1 complex molecular_function owl:Class GO:0033184 biolink:NamedThing positive regulation of histone ubiquitination Any process that activates or increases the frequency, rate or extent of the addition of a ubiquitin group to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031398 biolink:NamedThing positive regulation of protein ubiquitination Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein. tmpzr1t_l9r_go_relaxed.owl up regulation of protein ubiquitination|upregulation of protein ubiquitination|activation of protein ubiquitination|stimulation of protein ubiquitination|up-regulation of protein ubiquitination biological_process owl:Class GO:0035491 biolink:NamedThing positive regulation of leukotriene production involved in inflammatory response Any process that increases the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T10:50:14Z biological_process owl:Class GO:0004043 biolink:NamedThing L-aminoadipate-semialdehyde dehydrogenase activity Catalysis of the reaction: L-2-aminoadipate 6-semialdehyde + NADP+ + H2O = L-2-aminoadipate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl L-alpha-aminoadipate delta-semialdehyde oxidoreductase activity|aminoadipate semialdehyde dehydrogenase activity|AAR|alpha-aminoadipate reductase activity|L-2-aminoadipate-6-semialdehyde:NAD(P)+ 6-oxidoreductase|alpha-aminoadipate-semialdehyde dehydrogenase activity|2-aminoadipate semialdehyde dehydrogenase activity|L-alpha-aminoadipate delta-semialdehyde:NAD oxidoreductase activity|aminoadipate-semialdehyde dehydrogenase activity|2-aminoadipic semialdehyde dehydrogenase activity|L-alpha-aminoadipate delta-semialdehyde:nicotinamide adenine dinucleotide oxidoreductase activity MetaCyc:1.2.1.31-RXN|EC:1.2.1.31|RHEA:12308|Reactome:R-HSA-70941 molecular_function owl:Class GO:0140532 biolink:NamedThing negative regulation of osmosensory signaling MAPK cascade Any process that stops, prevents or reduces the frequency, rate or extent of osmosensory signaling MAPK cascade. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20162 pg 2020-10-20T15:39:24Z biological_process owl:Class GO:2000953 biolink:NamedThing positive regulation of xyloglucan catabolic process Any process that activates or increases the frequency, rate or extent of xyloglucan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of xyloglucan catabolism tt 2011-08-01T02:20:26Z biological_process owl:Class GO:0030255 biolink:NamedThing protein secretion by the type IV secretion system The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type IV protein secretion system. tmpzr1t_l9r_go_relaxed.owl protein secretion by the type IV protein secretion system|type IV protein secretion system|protein secretion by the T4SS Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular component term 'type IV protein secretion system complex ; GO:0043684'. biological_process owl:Class GO:1901738 biolink:NamedThing regulation of vitamin A metabolic process Any process that modulates the frequency, rate or extent of vitamin A metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of vitamin A metabolism dph 2013-01-11T15:29:43Z biological_process owl:Class GO:0060616 biolink:NamedThing mammary gland cord formation The process in which the mammary gland cord forms by elongation of the mammary bud. The cord is formed once the elongating bud breaks through the mesenchyme and reaches the fat pad. tmpzr1t_l9r_go_relaxed.owl mammary gland sprout formation dph 2009-05-18T08:57:58Z biological_process owl:Class GO:0060596 biolink:NamedThing mammary placode formation The developmental process in which the mammary placode forms. The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-13T11:55:20Z biological_process owl:Class GO:0006716 biolink:NamedThing juvenile hormone metabolic process The chemical reactions and pathways involving juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. tmpzr1t_l9r_go_relaxed.owl juvenile hormone metabolism biological_process owl:Class GO:1901998 biolink:NamedThing toxin transport The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dph 2013-03-19T19:24:55Z biological_process owl:Class GO:0072251 biolink:NamedThing metanephric juxtaglomerulus cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the juxtaglomerulus cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:54:35Z biological_process owl:Class GO:0072202 biolink:NamedThing cell differentiation involved in metanephros development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T10:40:14Z biological_process owl:Class GO:0018718 biolink:NamedThing 1,2-dihydroxy-phenanthrene glycosyltransferase activity Catalysis of the reaction: 1,2-dihydroxyphenanthrene + UDP-glucose = 2-hydroxy-1-phenanthryl-beta-D-glucopyranoside + UDP. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0569 molecular_function owl:Class GO:0071877 biolink:NamedThing regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway Any process that modulates the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway activity. An adrenergic receptor signaling pathway is the series of molecular signals generated as a consequence of an adrenergic receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl regulation of adrenergic receptor signaling pathway|regulation of adrenergic receptor signalling pathway mah 2010-09-13T04:12:10Z biological_process owl:Class GO:0030564 biolink:NamedThing tRNA 2'-O-ribose methylation guide activity Specifies the site of 2'-O-ribose methylation in a tRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0030561 biolink:NamedThing RNA 2'-O-ribose methylation guide activity Specifies the site of 2'-O-ribose methylation in an RNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0043513 biolink:NamedThing inhibin B complex Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-B subunit. tmpzr1t_l9r_go_relaxed.owl Note that the actions of the inhibin complex are the opposite of those of the activin complex, which is a dimer of an inhibin beta-A and/or inhibin beta-B subunit. See also the cellular component term 'activin complex ; GO:0048180'. cellular_component owl:Class GO:0043511 biolink:NamedThing inhibin complex Heterodimeric hormone composed of an inhibin alpha subunit complexed with either an inhibin beta-A subunit, to form inhibin A, or an inhibin beta-B subunit, to form inhibin B. tmpzr1t_l9r_go_relaxed.owl Note that the actions of the inhibin complex are the opposite of those of the activin complex, which is a dimer of an inhibin beta-A and/or inhibin beta-B subunit. See also the cellular component term 'activin complex ; GO:0048180'. cellular_component owl:Class GO:0052723 biolink:NamedThing inositol hexakisphosphate 1-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 1-diphospho-1D-myo-inositol (2,3,4,5,6)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.7.4.21|RHEA:37459|MetaCyc:RXN-10972|KEGG_REACTION:R05799 ai 2011-08-16T11:47:36Z molecular_function owl:Class GO:0036372 biolink:NamedThing opsin transport The directed movement of an opsin (a G protein-coupled receptor of photoreceptor cells) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl ciliary transport of opsin bf 2013-04-23T09:26:29Z biological_process owl:Class GO:0001870 biolink:NamedThing positive regulation of complement activation, lectin pathway Any process that activates or increases the frequency, rate or extent of complement activation by the lectin pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of complement cascade, lectin pathway|stimulation of complement activation, lectin pathway|activation of complement activation, lectin pathway|up regulation of complement activation, lectin pathway|upregulation of complement activation, lectin pathway|up-regulation of complement activation, lectin pathway biological_process owl:Class GO:0099605 biolink:NamedThing regulation of action potential firing rate Any process that regulates the frequency of action potentials in a spike train. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905835 biolink:NamedThing cellular response to pyrimidine ribonucleotide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pyrimidine ribonucleotide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2017-01-17T19:24:09Z biological_process owl:Class GO:2000833 biolink:NamedThing positive regulation of steroid hormone secretion Any process that activates or increases the frequency, rate or extent of steroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:38:51Z biological_process owl:Class GO:0046887 biolink:NamedThing positive regulation of hormone secretion Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell. tmpzr1t_l9r_go_relaxed.owl upregulation of hormone secretion|up-regulation of hormone secretion|stimulation of hormone secretion|activation of hormone secretion|up regulation of hormone secretion biological_process owl:Class GO:1990694 biolink:NamedThing intrinsic component of Golgi medial cisterna membrane The component of the Golgi medial cisterna membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic component of medial-Golgi cisterna membrane bhm 2015-03-12T10:29:12Z cellular_component owl:Class GO:0070381 biolink:NamedThing endosome to plasma membrane transport vesicle A transport vesicle that mediates transport from the endosome to the plasma membrane, and fuses with the plasma membrane to deliver lipids and membrane proteins to the plasma membrane and to release various cargo molecules, such as proteins or hormones, by exocytosis. tmpzr1t_l9r_go_relaxed.owl endosome-plasma membrane transport vesicle|endosome to plasma membrane constitutive secretory pathway transport vesicle cellular_component owl:Class GO:0035971 biolink:NamedThing peptidyl-histidine dephosphorylation The removal of phosphoric residues from peptidyl-O-phospho-L-histidine to form peptidyl-histidine. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-08T03:26:02Z biological_process owl:Class GO:1904361 biolink:NamedThing positive regulation of spore germination Any process that activates or increases the frequency, rate or extent of spore germination. tmpzr1t_l9r_go_relaxed.owl upregulation of spore germination|up regulation of spore germination|positive regulation of spore germination on or near host|up-regulation of spore germination|activation of spore germination pf 2015-06-12T19:46:18Z GO:0075007 biological_process owl:Class GO:0090384 biolink:NamedThing phagosome-lysosome docking The initial attachment of a phagosome membrane to a lysosome membrane. Docking requires only that the proteins come close enough to interact and adhere. tmpzr1t_l9r_go_relaxed.owl lysosome recruitment to phagosome tb 2010-10-27T10:24:28Z biological_process owl:Class GO:0048278 biolink:NamedThing vesicle docking The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere. tmpzr1t_l9r_go_relaxed.owl vesicle to membrane docking biological_process owl:Class GO:0097185 biolink:NamedThing cellular response to azide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an azide stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2011-11-16T10:04:41Z biological_process owl:Class GO:0009263 biolink:NamedThing deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleotide biosynthesis|deoxyribonucleotide anabolism|deoxyribonucleotide synthesis|deoxyribonucleotide formation biological_process owl:Class GO:0018232 biolink:NamedThing peptide cross-linking via S-(L-isoglutamyl)-L-cysteine The modification of peptidyl-glutamine and peptidyl-cysteine to form a S-(L-isoglutamyl)-L-cysteine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0108 biological_process owl:Class GO:0030157 biolink:NamedThing pancreatic juice secretion The regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001160 biolink:NamedThing regulation of histone H3-K79 methylation Any process that modulates the frequency, rate or extent of histone H3-K79 methylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3K79me|regulation of histone lysine H3 K79 methylation|regulation of histone H3 K79 methylation se 2011-10-25T10:27:00Z biological_process owl:Class GO:0098795 biolink:NamedThing mRNA destabilization-mediated gene silencing A gene silencing mechanism that involves the destabilization of an mRNA. tmpzr1t_l9r_go_relaxed.owl mRNA cleavage involved in gene silencing https://github.com/geneontology/go-ontology/issues/22389 biological_process owl:Class GO:0016441 biolink:NamedThing posttranscriptional gene silencing The inactivation of gene expression by a posttranscriptional mechanism. tmpzr1t_l9r_go_relaxed.owl PTGS|cosuppression|post-transcriptional gene silencing|quelling https://github.com/geneontology/go-ontology/issues/22202 Wikipedia:Post_transcriptional_gene_silencing biological_process owl:Class GO:0007100 biolink:NamedThing mitotic centrosome separation Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009141 biolink:NamedThing nucleoside triphosphate metabolic process The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside triphosphate metabolism biological_process owl:Class GO:0006753 biolink:NamedThing nucleoside phosphate metabolic process The chemical reactions and pathways involving any phosphorylated nucleoside. tmpzr1t_l9r_go_relaxed.owl nucleoside phosphate metabolism biological_process owl:Class GO:0070845 biolink:NamedThing polyubiquitinated misfolded protein transport The directed movement of misfolded polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell. tmpzr1t_l9r_go_relaxed.owl polyubiquitylated misfolded protein transport|misfolded polyubiquitinated protein transport mah 2009-07-31T12:52:26Z biological_process owl:Class GO:0070844 biolink:NamedThing polyubiquitinated protein transport The directed movement of polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell. tmpzr1t_l9r_go_relaxed.owl polyubiquitylated protein transport mah 2009-07-31T12:51:10Z biological_process owl:Class GO:0080024 biolink:NamedThing indolebutyric acid metabolic process The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. tmpzr1t_l9r_go_relaxed.owl IBA metabolic process|indole-3-butyric acid metabolic process|IBA metabolism biological_process owl:Class GO:0120029 biolink:NamedThing proton export across plasma membrane The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl proton export from cell|hydrogen ion export from cell|hydrogen ion export across plasma membrane krc 2017-03-31T17:39:03Z biological_process owl:Class GO:1900778 biolink:NamedThing fumiquinazoline A biosynthetic process The chemical reactions and pathways resulting in the formation of fumiquinazoline A. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline A synthesis|fumiquinazoline A anabolism|fumiquinazoline A biosynthesis|fumiquinazoline A formation di 2012-06-04T09:30:25Z biological_process owl:Class GO:0006176 biolink:NamedThing dATP biosynthetic process from ADP The chemical reactions and pathways resulting in the formation of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate) from other compounds, including ADP, adenosine diphosphate. tmpzr1t_l9r_go_relaxed.owl dATP synthesis from ADP|dATP anabolism from ADP|dATP formation from ADP biological_process owl:Class GO:0046031 biolink:NamedThing ADP metabolic process The chemical reactions and pathways involving ADP, adenosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl ADP metabolism biological_process owl:Class GO:1903740 biolink:NamedThing positive regulation of phosphatidate phosphatase activity Any process that activates or increases the frequency, rate or extent of phosphatidate phosphatase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of phosphatic acid phosphatase activity|activation of phosphatidate phosphohydrolase activity|up regulation of acid phosphatidyl phosphatase activity|positive regulation of acid phosphatidyl phosphatase activity|up regulation of phosphatic acid phosphatase activity|up regulation of phosphatidate phosphatase activity|up regulation of phosphatidate phosphohydrolase activity|upregulation of 3-sn-phosphatidate phosphohydrolase activity|up-regulation of 3-sn-phosphatidate phosphohydrolase activity|upregulation of acid phosphatidyl phosphatase activity|up regulation of phosphatidic acid phosphatase activity|upregulation of phosphatidate phosphatase activity|activation of phosphatic acid phosphatase activity|activation of 3-sn-phosphatidate phosphohydrolase activity|activation of phosphatidic acid phosphatase activity|activation of phosphatidate phosphatase activity|activation of acid phosphatidyl phosphatase activity|activation of phosphatic acid phosphohydrolase activity|upregulation of phosphatic acid phosphohydrolase activity|upregulation of phosphatidic acid phosphatase activity|positive regulation of 3-sn-phosphatidate phosphohydrolase activity|positive regulation of phosphatidate phosphohydrolase activity|up-regulation of phosphatidic acid phosphatase activity|up-regulation of phosphatidate phosphatase activity|upregulation of phosphatidate phosphohydrolase activity|positive regulation of phosphatidic acid phosphatase activity|positive regulation of phosphatic acid phosphohydrolase activity|up-regulation of phosphatidate phosphohydrolase activity|up regulation of 3-sn-phosphatidate phosphohydrolase activity|up-regulation of phosphatic acid phosphatase activity|up regulation of phosphatic acid phosphohydrolase activity|up-regulation of phosphatic acid phosphohydrolase activity|up-regulation of acid phosphatidyl phosphatase activity|positive regulation of phosphatic acid phosphatase activity tb 2014-12-11T23:37:44Z biological_process owl:Class GO:0034173 biolink:NamedThing positive regulation of toll-like receptor 11 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 11 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR11 signaling pathway|positive regulation of toll-like receptor 11 signalling pathway biological_process owl:Class GO:0004153 biolink:NamedThing dihydropterin deaminase activity Catalysis of the reaction: 7,8-dihydropterin + H2O = 7,8-dihydrolumazine + NH3. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036302 biolink:NamedThing atrioventricular canal development The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T09:55:37Z biological_process owl:Class GO:0019295 biolink:NamedThing coenzyme M biosynthetic process The chemical reactions and pathways resulting in the formation of coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes. tmpzr1t_l9r_go_relaxed.owl coenzyme M anabolism|coenzyme M biosynthesis|coenzyme M synthesis|coenzyme M formation MetaCyc:P261-PWY biological_process owl:Class GO:0009195 biolink:NamedThing pyrimidine ribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside diphosphate catabolism|pyrimidine ribonucleoside diphosphate breakdown|pyrimidine ribonucleoside diphosphate degradation biological_process owl:Class GO:0009191 biolink:NamedThing ribonucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside diphosphate degradation|ribonucleoside diphosphate catabolism|ribonucleoside diphosphate breakdown biological_process owl:Class GO:1905436 biolink:NamedThing negative regulation of histone H3-K4 trimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K4 trimethylation. tmpzr1t_l9r_go_relaxed.owl down regulation of histone H3-K4 trimethylation|downregulation of histone H3-K4 trimethylation|down-regulation of histone H3-K4 trimethylation|inhibition of histone H3-K4 trimethylation hbye 2016-09-14T13:09:03Z biological_process owl:Class GO:0050259 biolink:NamedThing ribose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: H(2)O + NADP(+) + ribofuranose = D-ribonate + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl NADP-pentose-dehydrogenase activity|D-ribose:NADP+ 1-oxidoreductase activity|D-ribose dehydrogenase (NADP+) RHEA:11676|EC:1.1.1.115|KEGG_REACTION:R01079|MetaCyc:RIBOSE-1-DEHYDROGENASE-NADP+-RXN molecular_function owl:Class GO:0047140 biolink:NamedThing glutathione-CoA-glutathione transhydrogenase activity Catalysis of the reaction: oxidized glutathione + CoA = reduced glutathione + CoA-glutathione. tmpzr1t_l9r_go_relaxed.owl glutathione-coenzyme A glutathione disulfide transhydrogenase activity|CoA:glutathione-disulfide oxidoreductase activity|glutathione:coenzyme A-glutathione transhydrogenase activity|coenzyme A:oxidized-glutathione oxidoreductase activity|glutathione coenzyme A-glutathione transhydrogenase activity|coenzyme A:glutathione-disulfide oxidoreductase activity EC:1.8.4.3|RHEA:13125|MetaCyc:1.8.4.3-RXN molecular_function owl:Class GO:0048029 biolink:NamedThing monosaccharide binding Binding to a monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097741 biolink:NamedThing mastigoneme A hair-like structure covering the flagella found in some algae (heterokonts and cryptophytes). It is approximately 15 nm in diameter, and usually consist of a tubular shaft that itself terminates in smaller hairs. It is composed of glycoproteins and, likely, carbohydrates. Mastigonemes may assist in locomotion by increasing the surface area of a flagellum. tmpzr1t_l9r_go_relaxed.owl pr 2016-10-19T11:33:38Z cellular_component owl:Class GO:0099080 biolink:NamedThing supramolecular complex A cellular component that consists of an indeterminate number of proteins or macromolecular complexes, organized into a regular, higher-order structure such as a polymer, sheet, network or a fiber. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048025 biolink:NamedThing negative regulation of mRNA splicing, via spliceosome Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism. tmpzr1t_l9r_go_relaxed.owl down-regulation of nuclear mRNA splicing, via spliceosome|inhibition of nuclear mRNA splicing, via spliceosome|negative regulation of pre-mRNA splicing|down regulation of nuclear mRNA splicing via U2-type spliceosome|downregulation of nuclear mRNA splicing via U2-type spliceosome|negative regulation of nuclear mRNA splicing via U2-type spliceosome|downregulation of nuclear mRNA splicing, via spliceosome|inhibition of nuclear mRNA splicing via U2-type spliceosome|down-regulation of nuclear mRNA splicing via U2-type spliceosome|down regulation of nuclear mRNA splicing, via spliceosome|negative regulation of nuclear mRNA splicing, via spliceosome GO:0035056 biological_process owl:Class GO:0033119 biolink:NamedThing negative regulation of RNA splicing Any process that stops, prevents, or reduces the frequency, rate or extent of RNA splicing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044719 biolink:NamedThing regulation of imaginal disc-derived wing size Any process that modulates the size of an imaginal disc-derived wing. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-18T13:49:12Z biological_process owl:Class GO:0001777 biolink:NamedThing T cell homeostatic proliferation The non-specific expansion of T cell populations within a whole or part of an organism to reach to a total number of T cells which will then remain stable over time in the absence of an external stimulus. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte homeostatic proliferation|resting T cell proliferation|resting T-cell proliferation|T-cell homeostatic proliferation|T lymphocyte homeostatic proliferation biological_process owl:Class GO:0008038 biolink:NamedThing neuron recognition The process in which a neuronal cell in a multicellular organism interprets its surroundings. tmpzr1t_l9r_go_relaxed.owl neuronal cell recognition biological_process owl:Class GO:0008037 biolink:NamedThing cell recognition The process in which a cell in an organism interprets its surroundings. tmpzr1t_l9r_go_relaxed.owl recognition of surroundings by cell biological_process owl:Class GO:0034009 biolink:NamedThing isoprene synthase activity Catalysis of the reaction: dimethylallyl diphosphate = diphosphate + isoprene. tmpzr1t_l9r_go_relaxed.owl ISPC|ISPS|dimethylallyl-diphosphate diphosphate-lyase (isoprene-forming) activity MetaCyc:4.2.3.27-RXN|EC:4.2.3.27|KEGG_REACTION:R08199|RHEA:13369 molecular_function owl:Class GO:0050819 biolink:NamedThing negative regulation of coagulation Any process that stops, prevents, or reduces the frequency, rate or extent of coagulation. tmpzr1t_l9r_go_relaxed.owl down regulation of coagulation|anticoagulant activity|downregulation of coagulation|negative regulation of clotting|down-regulation of coagulation|inhibition of coagulation biological_process owl:Class GO:0070948 biolink:NamedThing regulation of neutrophil mediated cytotoxicity Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a target cell, the directed killing of a target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl regulation of neutrophil mediated cell killing mah 2009-10-01T02:14:36Z biological_process owl:Class GO:0048502 biolink:NamedThing ABC-type thiamine transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiamine(out) = ADP + H(+) + phosphate + thiamine(in). tmpzr1t_l9r_go_relaxed.owl thiamin-transporting ATPase activity|thiamine ABC transporter|thiamin pyrophosphate ABC transporter|thiamin pyrophosphate porter activity|thiamine-transporting ATPase activity|thiamine pyrophosphate-transporting ATPase activity|TPP transporting ATPase activity|thiamin pyrophosphate transporting ATPase activity|ATPase-coupled thiamine transmembrane transporter activity|ATP-dependent thiamine transmembrane transporter activity RHEA:29811|EC:7.6.2.15|TC:3.A.1.19.1 GO:0015619 molecular_function owl:Class GO:0048709 biolink:NamedThing oligodendrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001067 biolink:NamedThing pullulan binding Binding to pullulan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T11:50:06Z molecular_function owl:Class GO:0051333 biolink:NamedThing meiotic nuclear membrane reassembly The cell cycle process in which the reformation of the nuclear membranes during meiosis occurs. tmpzr1t_l9r_go_relaxed.owl meiotic nuclear envelope reassembly https://github.com/geneontology/go-ontology/issues/20636 biological_process owl:Class GO:0006558 biolink:NamedThing L-phenylalanine metabolic process The chemical reactions and pathways involving L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl phenylalanine metabolism|L-phenylalanine metabolism|phenylalanine metabolic process biological_process owl:Class GO:0097654 biolink:NamedThing platelet SNARE complex A SNARE complex that is capable of fusing intracellular vesicles to the plasma membrane of platelets for exocytosis of alpha-granules or dense granules. Contains isoforms of VAMP, SNAP and syntaxin proteins. Ternary SNARE complexes interact in a circular array to form ring complexes or channels around the membrane fusion. A common composition in human is VAMP-8, SNAP-23 and syntaxin-2 or -4. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-24T13:50:49Z cellular_component owl:Class GO:0042313 biolink:NamedThing protein kinase C deactivation Any process resulting in the inhibition or termination of the activity of protein kinase C. tmpzr1t_l9r_go_relaxed.owl PKC deactivation biological_process owl:Class GO:1902811 biolink:NamedThing positive regulation of skeletal muscle fiber differentiation Any process that activates or increases the frequency, rate or extent of skeletal muscle fiber differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of skeletal muscle fiber differentiation|up regulation of skeletal muscle fiber differentiation|upregulation of skeletal muscle fiber differentiation|activation of skeletal muscle fiber differentiation mr 2014-03-26T21:18:38Z biological_process owl:Class GO:2000762 biolink:NamedThing regulation of phenylpropanoid metabolic process Any process that modulates the frequency, rate or extent of phenylpropanoid metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of phenylpropanoid metabolism tb 2011-06-17T06:13:43Z biological_process owl:Class GO:0046539 biolink:NamedThing histamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + histamine = N(tau)-methylhistamine + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl imidazolemethyltransferase activity|S-adenosyl-L-methionine:histamine N-tele-methyltransferase activity|histamine-methylating enzyme|histamine 1-methyltransferase activity|histamine methyltransferase activity|S-adenosylmethionine-histamine N-methyltransferase activity KEGG_REACTION:R02155|MetaCyc:HISTAMINE-N-METHYLTRANSFERASE-RXN|RHEA:19301|EC:2.1.1.8|Reactome:R-HSA-175993 molecular_function owl:Class GO:1905621 biolink:NamedThing positive regulation of alpha-(1->3)-fucosyltransferase activity Any process that activates or increases the frequency, rate or extent of alpha-(1->3)-fucosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl activation of alpha-(1->3)-fucosyltransferase activity|activation of alpha-1,3-fucosyltransferase activity|up-regulation of alpha-1,3-fucosyltransferase activity|up-regulation of alpha-(1,3)-fucosyltransferase activity|up regulation of alpha-1,3-fucosyltransferase activity|upregulation of alpha-(1,3)-fucosyltransferase activity|up regulation of alpha-(1->3)-fucosyltransferase activity|upregulation of alpha-1,3-fucosyltransferase activity|upregulation of alpha-(1->3)-fucosyltransferase activity|positive regulation of alpha(1,3)-fucosyltransferase activity|activation of alpha-(1,3)-fucosyltransferase activity|up regulation of alpha(1,3)-fucosyltransferase activity|upregulation of alpha(1,3)-fucosyltransferase activity|up-regulation of alpha-(1->3)-fucosyltransferase activity|up regulation of alpha-(1,3)-fucosyltransferase activity|activation of alpha(1,3)-fucosyltransferase activity|positive regulation of alpha-1,3-fucosyltransferase activity|positive regulation of alpha-(1,3)-fucosyltransferase activity|up-regulation of alpha(1,3)-fucosyltransferase activity rz 2016-10-28T14:39:52Z biological_process owl:Class GO:1905619 biolink:NamedThing regulation of alpha-(1->3)-fucosyltransferase activity Any process that modulates the frequency, rate or extent of alpha-(1->3)-fucosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-1,3-fucosyltransferase activity|regulation of alpha(1,3)-fucosyltransferase activity|regulation of alpha-(1,3)-fucosyltransferase activity rz 2016-10-28T14:39:37Z biological_process owl:Class GO:0140211 biolink:NamedThing folic acid:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: folic acid(out) + H+(out) = folic acid(in) + H+(in). The main folic acid symporter is the Proton-Coupled Folate Transporter (PCFT/SLC46A1), which has similar affinity for transport of reduced folates (5-methyl THF, 5-formyl THF) and folic acid. tmpzr1t_l9r_go_relaxed.owl TC:2.A.1.50.1 pg 2018-03-30T08:00:09Z molecular_function owl:Class GO:0000297 biolink:NamedThing spermine transmembrane transporter activity Enables the transfer of spermine from one side of a membrane to the other. Spermine is a polybasic amine found in human sperm, in ribosomes and in some viruses, which is involved in nucleic acid packaging. Synthesis is regulated by ornithine decarboxylase which plays a key role in control of DNA replication. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015203 biolink:NamedThing polyamine transmembrane transporter activity Enables the transfer of polyamines, organic compounds containing two or more amino groups, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl amine/amide/polyamine channel activity molecular_function owl:Class GO:0045574 biolink:NamedThing sterigmatocystin catabolic process The chemical reactions and pathways resulting in the breakdown of sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds. tmpzr1t_l9r_go_relaxed.owl sterigmatocystin degradation|sterigmatocystin catabolism|sterigmatocystin breakdown biological_process owl:Class GO:0006855 biolink:NamedThing xenobiotic transmembrane transport The process in which a xenobiotic, a compound foreign to the organim exposed to it, is transported across a membrane. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug transmembrane transport|drug membrane transport|multidrug transport https://github.com/geneontology/go-ontology/issues/19460 Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0042908 biolink:NamedThing xenobiotic transport The directed movement of a xenobiotic into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A xenobiotic is a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug transport https://github.com/geneontology/go-ontology/issues/19460 GO:0015893 biological_process owl:Class GO:0001798 biolink:NamedThing positive regulation of type IIa hypersensitivity Any process that activates or increases the frequency, rate or extent of type IIa hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl upregulation of type IIa hypersensitivity|activation of type IIa hypersensitivity|up-regulation of type IIa hypersensitivity|stimulation of type IIa hypersensitivity|up regulation of type IIa hypersensitivity biological_process owl:Class GO:0050838 biolink:NamedThing peptidyl-5-hydroxy-L-lysine trimethylation The methylation of 5-hydroxy-L-lysine to form peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0359 biological_process owl:Class GO:0018022 biolink:NamedThing peptidyl-lysine methylation The methylation of peptidyl-lysine to form either the mono-, di- or trimethylated derivative. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901647 biolink:NamedThing positive regulation of synoviocyte proliferation Any process that activates or increases the frequency, rate or extent of synoviocyte proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of synoviocyte proliferation|activation of synoviocyte proliferation|upregulation of synoviocyte proliferation|up regulation of synoviocyte proliferation hjd 2012-11-16T20:16:32Z biological_process owl:Class GO:0006505 biolink:NamedThing GPI anchor metabolic process The chemical reactions and pathways involving glycosylphosphatidylinositol anchors, molecular mechanisms for attaching membrane proteins to the lipid bilayer of cell membranes. Structurally they consist of a molecule of phosphatidylinositol to which is linked, via the C-6 hydroxyl of the inositol, a carbohydrate chain. This chain is in turn linked to the protein through an ethanolamine phosphate group, the amino group of which is in amide linkage with the C-terminal carboxyl of the protein chain, the phosphate group being esterified to the C-6 hydroxyl of the terminal mannose of the core carbohydrate chain. tmpzr1t_l9r_go_relaxed.owl GPI/GSI anchor metabolic process|glycosylphosphatidylinositol metabolism|GPI/GSI anchor metabolism|glycosylphosphatidylinositol metabolic process|GPI anchor metabolism GO:0046472 biological_process owl:Class GO:0036320 biolink:NamedThing mating-type P-factor pheromone receptor activity Combining with the mating-type peptide pheromone P-factor and transmitting the signal across the membrane to initiate a change in cell activity. P-factor is a polypeptide of 23 residues, with the sequence Thr-Tyr-Ala-Asp-Phe-Leu-Arg-Ala-Tyr-Gln-Ser-Trp-Asn-Thr-Phe-Val-Asn-Pro-Asp-Arg-Pro-Asn-Leu, and is a peptide pheromone released by Schizosaccharomyces pombe cells of the cellular mating type Plus. tmpzr1t_l9r_go_relaxed.owl P-factor mating pheromone receptor activity|P-factor receptor activity bf 2012-08-30T16:55:30Z molecular_function owl:Class GO:0004932 biolink:NamedThing mating-type factor pheromone receptor activity Combining with a mating-type factor pheromone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900585 biolink:NamedThing arugosin metabolic process The chemical reactions and pathways involving arugosin. tmpzr1t_l9r_go_relaxed.owl arugosin metabolism di 2012-05-15T06:48:15Z biological_process owl:Class GO:0016824 biolink:NamedThing hydrolase activity, acting on acid halide bonds Catalysis of the hydrolysis of any acid halide bond. tmpzr1t_l9r_go_relaxed.owl EC:3.8.-.- molecular_function owl:Class GO:0061610 biolink:NamedThing glycerol to glycerone phosphate metabolic process The chemical reactions and pathways in which glycerol, 1,2,3-propanetriol, is converted to glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl glycerol metabolism to DHAP|glycerol metabolism to dihydroxyacetone phosphate|glycerol to DHAP metabolic process|glycerol to dihydroxyacetone phosphate metabolic process|glycerol metabolism to glycerone phosphate dph 2014-04-03T13:26:21Z biological_process owl:Class GO:0006071 biolink:NamedThing glycerol metabolic process The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. tmpzr1t_l9r_go_relaxed.owl glycerol metabolism MetaCyc:GLYCEROLMETAB-PWY biological_process owl:Class GO:0004045 biolink:NamedThing aminoacyl-tRNA hydrolase activity Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. tmpzr1t_l9r_go_relaxed.owl D-tyrosyl-tRNA hydrolase activity|aminoacyl-tRNA aminoacylhydrolase activity|peptidyl-tRNA hydrolase activity|N-substituted aminoacyl transfer RNA hydrolase activity|aminoacyl-tRNA hydrolase reaction|aminoacyl-transfer ribonucleate hydrolase activity RHEA:54448|EC:3.1.1.29|MetaCyc:AMINOCYL-TRNA-HYDROLASE-RXN GO:0019850|GO:0019851 molecular_function owl:Class GO:0062113 biolink:NamedThing early phagosome lumen The volume enclosed by the membrane of an eary phagosome. tmpzr1t_l9r_go_relaxed.owl early phagocytic vesicle lumen dph 2019-02-22T12:58:47Z cellular_component owl:Class GO:0097013 biolink:NamedThing phagocytic vesicle lumen The volume enclosed by the membrane of a phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-22T01:44:47Z cellular_component owl:Class GO:0033813 biolink:NamedThing deacetylcephalosporin-C acetyltransferase activity Catalysis of the reaction: acetyl-CoA + deacetylcephalosporin C = cephalosporin C + CoA. tmpzr1t_l9r_go_relaxed.owl DAC-AT|CPC acetylhydrolase activity|acetyl-CoA:deacetylcephalosporin-C acetyltransferase activity|acetyl-CoA:deacetylcephalosporin-C O-acetyltransferase activity|deacetylcephalosporin C acetyltransferase activity|acetyl-CoA:DAC O-acetyltransferase activity|acetyl-CoA:DAC acetyltransferase activity|cefG|DAC acetyltransferase activity|acetyl coenzyme A:DAC acetyltransferase activity RHEA:23860|KEGG_REACTION:R03064|EC:2.3.1.175|MetaCyc:2.3.1.175-RXN molecular_function owl:Class GO:0051902 biolink:NamedThing negative regulation of mitochondrial depolarization Any process that stops, prevents, or reduces the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive. tmpzr1t_l9r_go_relaxed.owl down regulation of mitochondrial depolarization|down-regulation of mitochondrial depolarization|downregulation of mitochondrial depolarization|inhibition of mitochondrial depolarization biological_process owl:Class GO:0032744 biolink:NamedThing positive regulation of interleukin-20 production Any process that activates or increases the frequency, rate, or extent of interleukin-20 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-20 production|stimulation of interleukin-20 production|upregulation of interleukin-20 production|up regulation of interleukin-20 production|up-regulation of interleukin-20 production|positive regulation of interleukin-20 biosynthetic process|activation of interleukin-20 production GO:0045389 biological_process owl:Class GO:0018494 biolink:NamedThing carvone reductase activity Catalysis of the reaction: carvone + 2 H+ + 2 e- = dihydrocarvone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9419|UM-BBD_reactionID:r0732|EC:1.3.99.25|MetaCyc:RXN-9403 molecular_function owl:Class GO:0042574 biolink:NamedThing retinal metabolic process The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A. tmpzr1t_l9r_go_relaxed.owl retinal metabolism|retinaldehyde metabolic process|retinaldehyde metabolism biological_process owl:Class GO:1990412 biolink:NamedThing hercynylselenocysteine lyase activity (selenoneine-forming) Catalysis of the reaction: hercynylselenocysteine + 2H+ = selenoneine + pyruvate + ammonium. tmpzr1t_l9r_go_relaxed.owl RHEA:42696 mah 2014-07-02T15:51:07Z molecular_function owl:Class GO:0032968 biolink:NamedThing positive regulation of transcription elongation from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl positive regulation of gene-specific transcription elongation from RNA polymerase II promoter|positive regulation of RNA elongation from RNA polymerase II promoter GO:0090040 biological_process owl:Class GO:0034121 biolink:NamedThing regulation of toll-like receptor signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR signaling pathway|regulation of toll-like receptor signalling pathway biological_process owl:Class GO:0097020 biolink:NamedThing COPII receptor activity Binding specifically to a substance (cargo) to deliver it to a COPII transport vesicle. Cargo receptors span a membrane (either the plasma membrane or a vesicle membrane), binding simultaneously to cargo molecules and coat adaptors, to efficiently recruit soluble proteins to nascent vesicles. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20002 pr 2011-03-24T04:19:55Z molecular_function owl:Class GO:0038024 biolink:NamedThing cargo receptor activity Binding specifically to a substance (cargo) to deliver it to a transport vesicle. Cargo receptors span a membrane (either the plasma membrane or a vesicle membrane), binding simultaneously to cargo molecules and coat adaptors, to efficiently recruit soluble proteins to nascent vesicles. tmpzr1t_l9r_go_relaxed.owl transport receptor activity|endocytic receptor activity|receptor activity|receptor activity involved in receptor-mediated endocytosis Reactome:R-HSA-350168|Reactome:R-HSA-3000122 Notes: (1) this term and its child terms are intended for receptors that bind to and internalize molecules by receptor-mediated endocytosis. For receptors that are coupled to a signal transduction pathway, consider instead the term 'signaling receptor activity ; GO:0038023' and its children. (2) Cargo receptors transport substances by vesicular transport, not by transmembrane transport. For transmembrane transporters, consider instead the term 'transmembrane transporter activity ; GO:0022857. bf 2011-08-01T02:50:45Z molecular_function owl:Class GO:2000117 biolink:NamedThing negative regulation of cysteine-type endopeptidase activity Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of thiol endopeptidase activity|negative regulation of lysosomal cysteine-type endopeptidase jl 2010-09-23T10:24:35Z biological_process owl:Class GO:0102435 biolink:NamedThing myricetin 7-O-methyltransferase activity Catalysis of the reaction: myricetin(1-) + S-adenosyl-L-methionine <=> 7-O-methylmyricetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13910 molecular_function owl:Class GO:0050651 biolink:NamedThing dermatan sulfate proteoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of dermatan sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are dermatan sulfate (chondroitin sulfate B). Dermatan sulfate is a glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. tmpzr1t_l9r_go_relaxed.owl dermatan sulphate proteoglycan biosynthetic process|dermatan sulphate proteoglycan biosynthesis|dermatan sulfate proteoglycan anabolism|dermatan sulfate proteoglycan synthesis|dermatan sulfate proteoglycan formation|chondroitin sulfate B proteoglycan biosynthetic process|chondroitin sulfate B proteoglycan biosynthesis|dermatan sulfate proteoglycan biosynthesis biological_process owl:Class GO:1901409 biolink:NamedThing positive regulation of phosphorylation of RNA polymerase II C-terminal domain Any process that activates or increases the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain. tmpzr1t_l9r_go_relaxed.owl up-regulation of phosphorylation of RNA polymerase II C-terminal domain|upregulation of generation of II(0) form of RNA polymerase II|activation of generation of hyperphosphorylated CTD of RNA polymerase II|up regulation of generation of II(0) form of RNA polymerase II|upregulation of CTD domain phosphorylation of RNA polymerase II|positive regulation of generation of II(0) form of RNA polymerase II|up regulation of CTD domain phosphorylation of RNA polymerase II|positive regulation of CTD domain phosphorylation of RNA polymerase II|up regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|activation of CTD domain phosphorylation of RNA polymerase II|upregulation of hyperphosphorylation of RNA polymerase II C-terminal domain|upregulation of phosphorylation of RNA polymerase II C-terminal domain|up-regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|activation of generation of II(0) form of RNA polymerase II|up-regulation of generation of II(0) form of RNA polymerase II|activation of hyperphosphorylation of RNA polymerase II C-terminal domain|up regulation of generation of hyperphosphorylated CTD of RNA polymerase II|activation of phosphorylation of RNA polymerase II C-terminal domain|positive regulation of generation of hyperphosphorylated CTD of RNA polymerase II|up regulation of phosphorylation of RNA polymerase II C-terminal domain|up-regulation of CTD domain phosphorylation of RNA polymerase II|up-regulation of generation of hyperphosphorylated CTD of RNA polymerase II|upregulation of generation of hyperphosphorylated CTD of RNA polymerase II|positive regulation of hyperphosphorylation of RNA polymerase II C-terminal domain vw 2012-10-01T14:41:15Z biological_process owl:Class GO:0061065 biolink:NamedThing regulation of dauer larval development Any process that modulates the rate, frequency, or extent of dauer larval development, the process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T01:07:07Z biological_process owl:Class GO:0002403 biolink:NamedThing T cell tolerance induction in mucosal-associated lymphoid tissue Tolerance induction taking place in the mucosal-associated lymphoid tissue (MALT) mediated by T cells. tmpzr1t_l9r_go_relaxed.owl T cell tolerance induction in MALT biological_process owl:Class GO:0070214 biolink:NamedThing CSK-GAP-A.p62 complex A protein complex that contains the protein-tyrosine kinase CSK and the GTPase-activating protein (GAP)-associated p62 (GAP-A.p62); may mediate translocation of proteins, including GAP and CSK, to membrane or cytoskeletal regions upon c-Src activation. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:1905653 biolink:NamedThing positive regulation of artery morphogenesis Any process that activates or increases the frequency, rate or extent of artery morphogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of arteriogenesis|activation of artery morphogenesis|upregulation of arterial morphogenesis|activation of arterial morphogenesis|up regulation of arteriogenesis|activation of arteriogenesis|positive regulation of arteriogenesis|up-regulation of arterial morphogenesis|upregulation of artery morphogenesis|up regulation of arterial morphogenesis|up-regulation of artery morphogenesis|positive regulation of arterial morphogenesis|up regulation of artery morphogenesis|upregulation of arteriogenesis rph 2016-11-09T12:20:01Z biological_process owl:Class GO:0106002 biolink:NamedThing mCRD-mediated mRNA stability complex A protein complex that binds to, and promotes stabilization of, mRNA molecules containing the major coding region instability determinant (mCRD) by bridging the mCRD domain and the poly(A) tail of the mRNA. In human, it consists of CSDE1, HNRPD, PABPC1, PAIP1 and SYNCRIP. tmpzr1t_l9r_go_relaxed.owl major coding region instability determinant-mediated mRNA stability complex|major coding-region determinant of instability - poly(A) tail-bridging complex|mCRD-poly(A)-bridging complex|major coding region determinant of instability-mediated mRNA stability complex|major coding region instability determinant-poly(A)-bridging complex This complex is related to GO:0070937 CRD-mediated mRNA stability complex but binds the major protein-coding-region determinant of instability (mCRD) domain rather than the CRD. Experimentally it has been shown to act on c-FOS mRNA while GO:0070937 acts on c-MYC mRNA. cellular_component owl:Class GO:1900834 biolink:NamedThing regulation of emericellin biosynthetic process Any process that modulates the frequency, rate or extent of emericellin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of Variecoxanthone B synthesis|regulation of Variecoxanthone B biosynthetic process|regulation of emericellin synthesis|regulation of Variecoxanthone B formation|regulation of emericellin anabolism|regulation of emericellin formation|regulation of Variecoxanthone B biosynthesis|regulation of Variecoxanthone B anabolism|regulation of emericellin biosynthesis di 2012-06-07T09:32:02Z biological_process owl:Class GO:0055086 biolink:NamedThing nucleobase-containing small molecule metabolic process The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside and nucleotide metabolism|nucleobase, nucleoside and nucleotide metabolic process biological_process owl:Class GO:0098923 biolink:NamedThing retrograde trans-synaptic signaling by soluble gas Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an soluble gas ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099543 biolink:NamedThing trans-synaptic signaling by soluble gas Cell-cell signaling between presynapse and postsynapse mediated by a soluble gas ligand crossing the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902892 biolink:NamedThing positive regulation of root hair elongation Any process that activates or increases the frequency, rate or extent of root hair elongation. tmpzr1t_l9r_go_relaxed.owl up-regulation of root hair elongation|up regulation of root hair elongation|activation of root hair elongation|upregulation of root hair elongation als 2014-04-07T13:46:53Z biological_process owl:Class GO:0043647 biolink:NamedThing inositol phosphate metabolic process The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl myo-inositol phosphate metabolism|inositol phosphate metabolism|myo-inositol phosphate metabolic process biological_process owl:Class GO:0048034 biolink:NamedThing heme O biosynthetic process The chemical reactions and pathways resulting in the formation of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle. tmpzr1t_l9r_go_relaxed.owl haem O biosynthetic process|heme O synthesis|haem O biosynthesis|heme O biosynthesis|heme O formation|heme O anabolism biological_process owl:Class GO:0048033 biolink:NamedThing heme O metabolic process The chemical reactions and pathways involving heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle. tmpzr1t_l9r_go_relaxed.owl haem O metabolism|heme O metabolism|haem O metabolic process biological_process owl:Class GO:0031300 biolink:NamedThing intrinsic component of organelle membrane The component of the organelle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to organelle membrane cellular_component owl:Class GO:0031997 biolink:NamedThing N-terminal myristoylation domain binding Binding to the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047485 biolink:NamedThing protein N-terminus binding Binding to a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. tmpzr1t_l9r_go_relaxed.owl amino-terminal binding|NH2-terminus binding|N-terminal binding|amino-terminus binding|N-terminal end binding|NH2-terminal binding molecular_function owl:Class GO:0001953 biolink:NamedThing negative regulation of cell-matrix adhesion Any process that stops, prevents, or reduces the rate or extent of cell adhesion to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl inhibition of cell-matrix adhesion|down-regulation of cell-matrix adhesion|downregulation of cell-matrix adhesion|down regulation of cell-matrix adhesion biological_process owl:Class GO:0045244 biolink:NamedThing succinate-CoA ligase complex (GDP-forming) A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming GTP. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA synthetase, GDP-forming GO:0045245|GO:0008325 cellular_component owl:Class GO:0002310 biolink:NamedThing alpha-beta T cell proliferation involved in immune response The expansion of an alpha-beta T cell population by cell division as part of an immune response. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-lymphocyte proliferation during immune response|alpha-beta T lymphocyte proliferation during immune response|alpha-beta T-cell proliferation during immune response|alpha-beta T cell proliferation during immune response biological_process owl:Class GO:0052040 biolink:NamedThing modulation by symbiont of host programmed cell death Any process in which an organism modulates the frequency, rate or extent of programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host non-apoptotic programmed cell death|modulation of host PCD GO:0052152 biological_process owl:Class GO:0060182 biolink:NamedThing apelin receptor activity Combining with the peptide apelin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042683 biolink:NamedThing negative regulation of compound eye cone cell fate specification Any process that restricts, stops or prevents a cell from specifying into a compound eye cone cell. tmpzr1t_l9r_go_relaxed.owl suppression of cone cell fate|downregulation of cone cell fate specification|inhibition of cone cell fate specification|down-regulation of cone cell fate specification|down regulation of cone cell fate specification GO:0010000 biological_process owl:Class GO:0032275 biolink:NamedThing luteinizing hormone secretion The regulated release of luteinizing hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032274 biolink:NamedThing gonadotropin secretion The regulated release of a gonadotropin, any hormone that stimulates the gonads, especially follicle-stimulating hormone and luteinizing hormone. tmpzr1t_l9r_go_relaxed.owl gonadotrophin secretion biological_process owl:Class GO:0005230 biolink:NamedThing extracellular ligand-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010259 biolink:NamedThing multicellular organism aging An aging process that has as participant a whole multicellular organism. Multicellular organism aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Multicellular organisms aging includes processes like cellular senescence and organ senescence, but is more inclusive. May precede death (GO:0016265) of an organism and may succeed developmental maturation (GO:0021700). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007275 biolink:NamedThing multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21234 Note that this term was 'developmental process'. biological_process owl:Class GO:0035816 biolink:NamedThing renal water absorption involved in negative regulation of urine volume Any process where water is taken up from the collecting ducts and proximal and distal loops of the nephron, which acts to decrease the amount of urine that is excreted from the body per unit time. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T01:37:34Z biological_process owl:Class GO:0070295 biolink:NamedThing renal water absorption A renal system process in which water is taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl nephron water absorption|renal water reabsorption biological_process owl:Class GO:0015799 biolink:NamedThing propanediol transport The directed movement of propanediol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Propanediol is a sweet colorless, viscous, hygroscopic liquid used as an antifreeze and in brake fluid; it is also as a humectant in cosmetics and personal care items, although it can be absorbed through the skin with harmful effects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016093 biolink:NamedThing polyprenol metabolic process The chemical reactions and pathways involving polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. tmpzr1t_l9r_go_relaxed.owl polyprenol metabolism biological_process owl:Class GO:2001264 biolink:NamedThing negative regulation of C-C chemokine binding Any process that stops, prevents or reduces the frequency, rate or extent of C-C chemokine binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-12-09T01:14:01Z biological_process owl:Class GO:2001263 biolink:NamedThing regulation of C-C chemokine binding Any process that modulates the frequency, rate or extent of C-C chemokine binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-12-09T01:13:54Z biological_process owl:Class GO:0051493 biolink:NamedThing regulation of cytoskeleton organization Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl regulation of cytoskeleton organization and biogenesis|regulation of cytoskeleton organisation biological_process owl:Class GO:0003267 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of secondary heart field cardioblast proliferation A canonical Wnt signaling pathway that contributes to an increase in the frequency, or rate of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in positive regulation of second heart field cardioblast proliferation|canonical Wnt receptor signalling pathway involved in positive regulation of secondary heart field cardioblast proliferation|canonical Wnt receptor signaling pathway involved in positive regulation of secondary heart field cardioblast proliferation|canonical Wnt-activated signaling pathway involved in positive regulation of secondary heart field cardioblast proliferation dph 2009-10-15T02:36:08Z biological_process owl:Class GO:0046774 biolink:NamedThing suppression by virus of host intracellular interferon activity Any viral process that results in the inhibition of interferon activity within the host cell. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of intracellular interferon activity|suppression by virus of intracellular interferon activity in host biological_process owl:Class GO:0006337 biolink:NamedThing nucleosome disassembly The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032986 biolink:NamedThing protein-DNA complex disassembly The disaggregation of a protein-DNA complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl DNA-protein complex disassembly biological_process owl:Class GO:0033422 biolink:NamedThing CCC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CCC codon. tmpzr1t_l9r_go_relaxed.owl proline tRNA Note that in the standard genetic code, CCC codes for proline. molecular_function owl:Class GO:0019665 biolink:NamedThing anaerobic amino acid catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of amino acids, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl amino acid fermentation biological_process owl:Class GO:1903725 biolink:NamedThing regulation of phospholipid metabolic process Any process that modulates the frequency, rate or extent of phospholipid metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of phospholipid metabolism sl 2014-12-09T20:49:27Z biological_process owl:Class GO:0019599 biolink:NamedThing (R)-4-hydroxymandelate catabolic process The chemical reactions and pathways resulting in the breakdown of (R)-4-hydroxymandelate, the anion of (R)-4-hydroxymandelic acid. tmpzr1t_l9r_go_relaxed.owl (R)-4-hydroxymandelate breakdown|(R)-4-hydroxymandelate catabolism|(R)-4-hydroxymandelate degradation MetaCyc:4-HYDROXYMANDELATE-DEGRADATION-PWY biological_process owl:Class GO:0010866 biolink:NamedThing regulation of triglyceride biosynthetic process Any process that modulates the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl regulation of triacylglycerol biosynthetic process biological_process owl:Class GO:0048190 biolink:NamedThing wing disc dorsal/ventral pattern formation The establishment, maintenance and elaboration of the dorsal/ventral axis of the wing disc, a precursor to the adult wing. tmpzr1t_l9r_go_relaxed.owl wing disc dorsoventral pattern formation|wing disc dorsal-ventral pattern formation biological_process owl:Class GO:0007450 biolink:NamedThing dorsal/ventral pattern formation, imaginal disc The establishment, maintenance and elaboration of the dorsal/ventral axis of the imaginal disc. Imaginal disks are masses of hypodermic cells, carried by the larvae of some insects after leaving the egg, from which masses the wings and legs of the adult are subsequently formed. tmpzr1t_l9r_go_relaxed.owl dorsal-ventral pattern formation, imaginal disc|dorsoventral pattern formation, imaginal disc biological_process owl:Class GO:0016091 biolink:NamedThing prenol biosynthetic process The chemical reactions and pathways resulting in the formation of prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail. tmpzr1t_l9r_go_relaxed.owl prenol biosynthesis|prenol synthesis|prenol formation|prenol anabolism biological_process owl:Class GO:0062025 biolink:NamedThing regulation of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Any process that modualtes the rate, frequency or extent of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T13:54:43Z biological_process owl:Class GO:0004784 biolink:NamedThing superoxide dismutase activity Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl superoxide:superoxide oxidoreductase activity|Mn, Fe superoxide dismutase|ferrisuperoxide dismutase activity|cuprein|SOD-2|hepatocuprein|Fe-SOD|SOD-3|iron superoxide oxidoreductase|SOD-1|Cu,Zn-SOD|SODS|iron superoxide dismutase activity|Cu-Zn superoxide dismutase activity|copper, zinc superoxide dismutase activity|Mn-SOD|nickel superoxide oxidoreductase|SOD|cytocuprein|SODF|erythrocuprein|superoxide dismutase I|manganese superoxide oxidoreductase|nickel superoxide dismutase activity|hemocuprein|SOD-4|manganese superoxide dismutase activity|superoxide dismutase II|zinc superoxide oxidoreductase Reactome:R-HSA-3299680|MetaCyc:SUPEROX-DISMUT-RXN|Reactome:R-HSA-3299691|Reactome:R-HSA-1222469|Reactome:R-HSA-3299682|Reactome:R-HSA-1222462|RHEA:20696|Reactome:R-HSA-3777112|EC:1.15.1.1 GO:0008383|GO:0008382|GO:0016954|GO:0004785 molecular_function owl:Class GO:1902819 biolink:NamedThing ethyl acetate biosynthetic process The chemical reactions and pathways resulting in the formation of ethyl acetate. tmpzr1t_l9r_go_relaxed.owl ethyl acetate biosynthesis|ethyl acetate synthesis|ethyl ethanoate biosynthetic process|ethyl acetate formation|ethyl acetate anabolism tt 2014-03-30T20:26:53Z biological_process owl:Class GO:0044552 biolink:NamedThing vasodilation in other organism A process by which an organism causes vasodilation of blood vessels, usually causing a reduction in blood pressure, in another organism. tmpzr1t_l9r_go_relaxed.owl regulation of vasodilation in other organism|modulation of vasodilation in other organism jl 2012-03-29T02:14:42Z biological_process owl:Class GO:0044553 biolink:NamedThing modulation of biological quality in other organism Any process that modulates the frequency, rate or extent of a biological quality in another organism. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc. tmpzr1t_l9r_go_relaxed.owl regulation of biological quality in other organism jl 2012-03-29T02:35:03Z biological_process owl:Class GO:1901390 biolink:NamedThing positive regulation of transforming growth factor beta activation Any process that activates or increases the frequency, rate or extent of transforming growth factor beta activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of TGF-beta activation|upregulation of TGFB activation|activation of TGFB activation|activation of latent TGF-beta activation|up regulation of TGF-B activation|upregulation of L-TGF-beta activation|upregulation of transforming growth factor beta activation|positive regulation of TGF-B activation|activation of TGFbeta activation|upregulation of TGF-B activation|up-regulation of transforming growth factor beta activation|positive regulation of L-TGF-beta activation|up-regulation of TGFB activation|up regulation of TGF-beta activation|upregulation of TGFbeta activation|activation of TGF-B activation|activation of L-TGF-beta activation|positive regulation of TGFbeta activation|up regulation of latent TGF-beta activation|positive regulation of latent TGF-beta activation|up-regulation of TGF-B activation|activation of TGF-beta activation|positive regulation of TGFB activation|up-regulation of latent TGF-beta activation|up regulation of transforming growth factor beta activation|up regulation of L-TGF-beta activation|upregulation of latent TGF-beta activation|up regulation of TGFB activation|up-regulation of L-TGF-beta activation|up-regulation of TGFbeta activation|up regulation of TGFbeta activation|upregulation of TGF-beta activation|activation of transforming growth factor beta activation|up-regulation of TGF-beta activation bf 2012-10-01T10:33:26Z biological_process owl:Class GO:0002822 biolink:NamedThing regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains Any process that modulates the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001129 biolink:NamedThing methane biosynthetic process from dimethylamine The chemical reactions and pathways resulting in the formation of a methane from a dimethylamine. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T10:26:13Z biological_process owl:Class GO:1902757 biolink:NamedThing bis(molybdopterin guanine dinucleotide)molybdenum metabolic process The chemical reactions and pathways involving bis(molybdopterin guanine dinucleotide)molybdenum. tmpzr1t_l9r_go_relaxed.owl bis(molybdopterin guanine dinucleotide)molybdenum metabolism dph 2014-03-06T13:58:10Z biological_process owl:Class GO:0016803 biolink:NamedThing ether hydrolase activity Catalysis of the hydrolysis of an ether bond, -O-. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8874435|EC:3.3.2.- molecular_function owl:Class GO:0016801 biolink:NamedThing hydrolase activity, acting on ether bonds Catalysis of the hydrolysis of any ether or thioether bond, -O- or -S- respectively. tmpzr1t_l9r_go_relaxed.owl EC:3.3.-.- molecular_function owl:Class GO:0033688 biolink:NamedThing regulation of osteoblast proliferation Any process that modulates the frequency, rate or extent of osteoblast proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009626 biolink:NamedThing plant-type hypersensitive response The rapid, localized death of plant cells in response to invasion by a pathogen. tmpzr1t_l9r_go_relaxed.owl HR-PCD|plant hypersensitive response|HR Note that term is to be used to annotate gene products in the plant. To annotate symbiont gene products that induce the hypersensitive response, consider the biological process term 'modulation by symbiont of host defense-related programmed cell death ; GO:0034053'. biological_process owl:Class GO:0090082 biolink:NamedThing positive regulation of heart induction by negative regulation of canonical Wnt signaling pathway Any process that decreases the rate, frequency or extent of canonical Wnt signaling pathway that positively regulates heart induction. Canonical Wnt signaling pathway involved in heart induction is the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart induction by negative regulation of canonical Wnt receptor signalling pathway|positive regulation of heart induction by negative regulation of canonical Wnt-activated signaling pathway|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway tb 2009-10-23T10:58:03Z biological_process owl:Class GO:1901651 biolink:NamedThing regulation of mitotic chromosome decondensation Any process that modulates the frequency, rate or extent of mitotic chromosome decondensation. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-19T14:13:58Z biological_process owl:Class GO:0042586 biolink:NamedThing peptide deformylase activity Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide. tmpzr1t_l9r_go_relaxed.owl PDF activity|polypeptide deformylase activity|formyl-L-methionyl peptide amidohydrolase activity EC:3.5.1.88|MetaCyc:3.5.1.88-RXN|RHEA:24420 molecular_function owl:Class GO:1900511 biolink:NamedThing positive regulation of pentose catabolic process to ethanol Any process that activates or increases the frequency, rate or extent of pentose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl up-regulation of pentose catabolism to ethanol|up-regulation of pentose catabolic process to ethanol|activation of pentose catabolic process to ethanol|upregulation of pentose catabolism to ethanol|positive regulation of pentose catabolism to ethanol|activation of pentose catabolism to ethanol|up regulation of pentose catabolism to ethanol|up regulation of pentose catabolic process to ethanol|upregulation of pentose catabolic process to ethanol tt 2012-05-02T04:05:01Z biological_process owl:Class GO:0120295 biolink:NamedThing histone serotonyltransferase activity Catalysis of the reaction: L-glutaminyl-[histone] + serotonin = 5-serotonyl-L-glutamyl-[histone] + NH4(+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 krc 2021-01-19T02:13:19Z molecular_function owl:Class GO:0090065 biolink:NamedThing regulation of production of siRNA involved in RNA interference Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. tmpzr1t_l9r_go_relaxed.owl regulation of RNA interference, production of siRNA tb 2009-08-12T11:41:09Z biological_process owl:Class GO:0044002 biolink:NamedThing acquisition of nutrients from host The process that begins with the production and formation of structures and molecules in an organism that are required for the acquisition and utilization of nutrients from its host organism, and the ends with the acquirement of the nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051701 biolink:NamedThing biological process involved in interaction with host An interaction between two organisms living together in more or less intimate association. The term host is used for the larger (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. tmpzr1t_l9r_go_relaxed.owl growth of symbiont in host vacuole|growth of symbiont in host cell|growth of symbiont in host organelle|growth of symbiont in host|interaction with host https://github.com/geneontology/go-ontology/issues/20191 GO:0044117|GO:0044116|GO:0044121|GO:0044112|GO:0044119|GO:0044125|GO:0044123 biological_process owl:Class GO:0015341 biolink:NamedThing zinc efflux active transmembrane transporter activity Enables the transfer of a zinc ion or zinc ions from the inside of the cell to the outside of the cell across a membrane: Zn2+(out) = Zn2+(in). The activity is driven by proton motive force. tmpzr1t_l9r_go_relaxed.owl zinc efflux permease activity molecular_function owl:Class GO:0022883 biolink:NamedThing zinc efflux transmembrane transporter activity Enables the transfer of a zinc ion or zinc ions from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl zinc efflux permease activity molecular_function owl:Class GO:0051254 biolink:NamedThing positive regulation of RNA metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving RNA. tmpzr1t_l9r_go_relaxed.owl up-regulation of RNA metabolic process|activation of RNA metabolic process|positive regulation of RNA metabolism|upregulation of RNA metabolic process|up regulation of RNA metabolic process|stimulation of RNA metabolic process biological_process owl:Class GO:0060712 biolink:NamedThing spongiotrophoblast layer development The process in which the spongiotrophoblast layer of the placenta progresses from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T03:33:40Z biological_process owl:Class GO:0062125 biolink:NamedThing regulation of mitochondrial gene expression Any process that modulates the frequency, rate or extent of mitochondrial gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). tmpzr1t_l9r_go_relaxed.owl dph 2019-05-30T16:45:04Z biological_process owl:Class GO:0014898 biolink:NamedThing cardiac muscle hypertrophy in response to stress The physiological enlargement or overgrowth of all or part of the heart muscle due to an increase in size (not length) of individual cardiac muscle fibers, without cell division, as a result of a disturbance in organismal or cellular homeostasis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000755 biolink:NamedThing positive regulation of sphingomyelin catabolic process Any process that activates or increases the frequency, rate or extent of sphingomyelin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of sphingomyelin degradation|positive regulation of sphingomyelin breakdown|positive regulation of sphingomyelin catabolism rl 2011-06-16T03:17:35Z biological_process owl:Class GO:0006757 biolink:NamedThing ATP generation from ADP The process of introducing a phosphate group into ADP, adenosine diphosphate, to produce ATP. tmpzr1t_l9r_go_relaxed.owl ADP phosphorylation biological_process owl:Class GO:1990426 biolink:NamedThing mitotic recombination-dependent replication fork processing Replication fork processing that includes recombination between DNA near the arrested fork and homologous sequences. Proteins involved in homologous recombination are required for replication restart. tmpzr1t_l9r_go_relaxed.owl homologous recombination dependent replication fork recovery|homologous recombination-dependent replication fork processing mah 2014-07-24T09:42:54Z biological_process owl:Class GO:1990505 biolink:NamedThing mitotic DNA replication maintenance of fidelity Any maintenance of fidelity that is involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl maintenance of fidelity involved in mitotic cell cycle DNA replication|maintenance of fidelity involved in mitotic DNA replication al 2014-10-01T14:09:05Z GO:1990510 biological_process owl:Class GO:1904412 biolink:NamedThing regulation of cardiac ventricle development Any process that modulates the frequency, rate or extent of cardiac ventricle development. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-25T19:52:15Z biological_process owl:Class GO:0007475 biolink:NamedThing apposition of dorsal and ventral imaginal disc-derived wing surfaces The coming together of the dorsal and ventral surfaces of the imaginal disc-derived wing during the conversion of a folded single layered wing disc to a flat bilayered wing. tmpzr1t_l9r_go_relaxed.owl apposition of dorsal and ventral wing surfaces biological_process owl:Class GO:0047333 biolink:NamedThing dihydrostreptomycin-6-phosphate 3'-alpha-kinase activity Catalysis of the reaction: ATP + dihydrostreptomycin 6-phosphate = ADP + dihydrostreptomycin 3'alpha,6-bisphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl dihydrostreptomycin 6-phosphate kinase (phosphorylating)|ATP:dihydrostreptomycin-6-P 3'alpha-phosphotransferase activity|dihydrostreptomycin-6-phosphate 3'alpha-kinase activity|ATP:dihydrostreptomycin-6-phosphate 3'alpha-phosphotransferase activity RHEA:16281|KEGG_REACTION:R03395|MetaCyc:2.7.1.88-RXN|EC:2.7.1.88 molecular_function owl:Class GO:0034071 biolink:NamedThing aminoglycoside phosphotransferase activity Catalysis of the reaction: ATP + aminoglycoside = ADP + phosphoaminoglycoside. tmpzr1t_l9r_go_relaxed.owl aminoglycoside kinase activity EC:2.7.1.- molecular_function owl:Class GO:0003353 biolink:NamedThing positive regulation of cilium movement Any process that increases the rate, frequency, or extent of cilium movement, the directed, self-propelled movement of a cilium. tmpzr1t_l9r_go_relaxed.owl positive regulation of flagellar movement|positive regulation of microtubule-based flagellum movement|positive regulation of flagellum movement Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2009-12-03T10:16:10Z GO:1900174 biological_process owl:Class GO:0003352 biolink:NamedThing regulation of cilium movement Any process that modulates the rate, frequency, or extent of cilium movement, the directed, self-propelled movement of a cilium. tmpzr1t_l9r_go_relaxed.owl regulation of flagellum movement|regulation of flagellar movement|regulation of microtubule-based flagellum movement Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2009-12-03T10:12:00Z GO:1900172 biological_process owl:Class GO:0120219 biolink:NamedThing subapical part of cell The region of a polarized cell that is just below the apical region. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue so the subapical region is further from the exposed surface and closer to the basal lamina. tmpzr1t_l9r_go_relaxed.owl subapical region of cell krc 2019-11-15T17:08:22Z cellular_component owl:Class GO:1903168 biolink:NamedThing positive regulation of pyrroline-5-carboxylate reductase activity Any process that activates or increases the frequency, rate or extent of pyrroline-5-carboxylate reductase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of 1-pyrroline-5-carboxylate reductase activity|upregulation of L-proline:NAD(P)+ 5-oxidoreductase activity|up regulation of L-proline:NAD(P)+ 5-oxidoreductase activity|upregulation of 1-pyrroline-5-carboxylate reductase activity|activation of L-proline:NAD(P)+ 5-oxidoreductase activity|upregulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|up-regulation of 1-pyrroline-5-carboxylate reductase activity|upregulation of pyrroline-5-carboxylate reductase activity|upregulation of P5CR activity|up regulation of P5CR activity|up-regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|up regulation of 1-pyrroline-5-carboxylate reductase activity|activation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|up-regulation of P5CR activity|positive regulation of L-proline oxidase activity|positive regulation of L-proline:NAD(P)+ 5-oxidoreductase activity|up regulation of L-proline oxidase activity|upregulation of L-proline-NAD(P)+ 5-oxidoreductase activity|up regulation of pyrroline-5-carboxylate reductase activity|positive regulation of L-proline-NAD(P)+ 5-oxidoreductase activity|up-regulation of L-proline oxidase activity|up-regulation of L-proline:NAD(P)+ 5-oxidoreductase activity|up-regulation of L-proline-NAD(P)+ 5-oxidoreductase activity|activation of L-proline-NAD(P)+ 5-oxidoreductase activity|activation of P5CR activity|up regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|activation of L-proline oxidase activity|activation of pyrroline-5-carboxylate reductase activity|upregulation of L-proline oxidase activity|up regulation of L-proline-NAD(P)+ 5-oxidoreductase activity|positive regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|up-regulation of pyrroline-5-carboxylate reductase activity|activation of 1-pyrroline-5-carboxylate reductase activity|positive regulation of P5CR activity bf 2014-07-09T19:51:25Z biological_process owl:Class GO:1903167 biolink:NamedThing regulation of pyrroline-5-carboxylate reductase activity Any process that modulates the frequency, rate or extent of pyrroline-5-carboxylate reductase activity. tmpzr1t_l9r_go_relaxed.owl regulation of P5CR activity|regulation of L-proline:NAD(P)+ 5-oxidoreductase activity|regulation of 1-pyrroline-5-carboxylate reductase activity|regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity|regulation of L-proline-NAD(P)+ 5-oxidoreductase activity|regulation of L-proline oxidase activity bf 2014-07-09T19:51:19Z biological_process owl:Class GO:0044832 biolink:NamedThing induction by virus of host cytokine production The process in which a virus increases the frequency, rate or extent of cytokine production in its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation by virus of host cytokine production jl 2014-02-06T13:04:23Z biological_process owl:Class GO:0062175 biolink:NamedThing brexanolone catabolic process The chemical reactions and pathways resulting in the breakdown of brexanolone. tmpzr1t_l9r_go_relaxed.owl allopregnanolone catabolism|allotetrahydroprogesterone breakdown|allopregnanolone breakdown|allotetrahydroprogesterone catabolic process|allotetrahydroprogesterone degradation|allotetrahydroprogesterone catabolism|brexanolone breakdown|allopregnanolone catabolic process|allopregnanolone degradation|brexanolone degradation|brexanolone catabolism dph 2019-11-18T19:57:46Z biological_process owl:Class GO:0005599 biolink:NamedThing collagen type X trimer A collagen homotrimer of alpha1(X) chains; type X collagen triple helices form hexagonal networks (sheets). tmpzr1t_l9r_go_relaxed.owl Collagen X trimers have been observed to form hexagonal lattices in vitro, but in vivo they have been found in a fibril associated form (PMID:19693541). cellular_component owl:Class GO:0014056 biolink:NamedThing regulation of acetylcholine secretion, neurotransmission Any process that modulates the frequency, rate or extent of the regulated release of acetylcholine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052756 biolink:NamedThing chitobiose phosphorylase activity Catalysis of the reaction: chitobiose + phosphate = N-acetyl-D-glucosamine + N-acetyl-alpha-D-glucosamine 1-phosphate. This reaction is the phosphorolysis of chitobiose, (GlcNAc)2, a dimer of beta-(1->4) linked glucosamine units. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-27T04:04:53Z molecular_function owl:Class GO:0021664 biolink:NamedThing rhombomere 5 morphogenesis The process in which the anatomical structures of rhombomere 5 are generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038094 biolink:NamedThing Fc-gamma receptor signaling pathway A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin G (IgG) to an Fc-gamma receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl Fc-gamma receptor signalling pathway bf 2012-02-16T05:22:46Z biological_process owl:Class GO:0038093 biolink:NamedThing Fc receptor signaling pathway A series of molecular signals initiated by the binding of the Fc portion of an immunoglobulin to an Fc receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl Fc receptor signalling pathway bf 2012-02-16T05:11:30Z biological_process owl:Class GO:0043171 biolink:NamedThing peptide catabolic process The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. tmpzr1t_l9r_go_relaxed.owl peptide catabolism|peptide degradation|peptide breakdown biological_process owl:Class GO:0046533 biolink:NamedThing negative regulation of photoreceptor cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of photoreceptor cell differentiation. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl down regulation of photoreceptor differentiation|down-regulation of photoreceptor differentiation|inhibition of photoreceptor cell differentiation|down regulation of photoreceptor cell differentiation|downregulation of photoreceptor cell differentiation|inhibition of photoreceptor differentiation|downregulation of photoreceptor differentiation|down-regulation of photoreceptor cell differentiation|negative regulation of photoreceptor differentiation GO:0045674 biological_process owl:Class GO:0044403 biolink:NamedThing biological process involved in symbiotic interaction A process carried out by gene products in an organism that enable the organism to engage in a symbiotic relationship, a more or less intimate association, with another organism. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts. tmpzr1t_l9r_go_relaxed.owl parasitism|symbiosis|symbiotic interaction between species|symbiotic interaction between host and organism|symbiotic interaction|host-pathogen interaction|symbiosis, encompassing mutualism through parasitism|symbiotic interaction between organisms|symbiotic process|commensalism https://github.com/geneontology/go-ontology/issues/20191|https://github.com/geneontology/go-ontology/issues/14807 GO:0043298|GO:0072519|GO:0085031|GO:0044404 biological_process owl:Class GO:1901826 biolink:NamedThing zeaxanthin catabolic process The chemical reactions and pathways resulting in the breakdown of zeaxanthin. tmpzr1t_l9r_go_relaxed.owl zeaxanthin degradation|zeaxanthin breakdown|zeaxanthin catabolism yaf 2013-01-22T11:37:00Z biological_process owl:Class GO:1901825 biolink:NamedThing zeaxanthin metabolic process The chemical reactions and pathways involving zeaxanthin. tmpzr1t_l9r_go_relaxed.owl zeaxanthin metabolism yaf 2013-01-22T11:36:55Z biological_process owl:Class GO:0006434 biolink:NamedThing seryl-tRNA aminoacylation The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904872 biolink:NamedThing regulation of telomerase RNA localization to Cajal body Any process that modulates the frequency, rate or extent of telomerase RNA localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl nc 2015-12-18T11:28:20Z biological_process owl:Class GO:0006560 biolink:NamedThing proline metabolic process The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl proline metabolism biological_process owl:Class GO:0075320 biolink:NamedThing negative regulation of ascus development Any process that stops, prevents, or reduces the frequency, rate or extent of ascus development, a saclike structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097172 biolink:NamedThing N-acetylmuramic acid metabolic process The chemical reactions and pathways involving N-acetylmuramic acid (MurNAc), a monosaccharide derivative of N-acetylglucosamine. tmpzr1t_l9r_go_relaxed.owl N-acetylmuramate metabolic process|N-acetylmuramate metabolism|N-acetylmuramic acid metabolism pr 2011-10-07T12:45:24Z biological_process owl:Class GO:0070116 biolink:NamedThing organellar chromatophore thylakoid A thylakoid located in an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore thylakoid cellular_component owl:Class GO:0039506 biolink:NamedThing modulation by virus of host molecular function The process in which a virus effects a change in the function of a host protein via a direct interaction. tmpzr1t_l9r_go_relaxed.owl modification by virus of host protein function bf 2011-06-02T02:38:42Z biological_process owl:Class GO:0010226 biolink:NamedThing response to lithium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072285 biolink:NamedThing mesenchymal to epithelial transition involved in metanephric renal vesicle formation A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephric renal vesicle. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:43:31Z biological_process owl:Class GO:0072036 biolink:NamedThing mesenchymal to epithelial transition involved in renal vesicle formation A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the renal vesicle. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:04:24Z biological_process owl:Class GO:0070105 biolink:NamedThing positive regulation of interleukin-6-mediated signaling pathway Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-6-mediated signaling pathway|positive regulation of interleukin-6-mediated signalling pathway biological_process owl:Class GO:0005501 biolink:NamedThing retinoid binding Binding to a retinoid, a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2465934|Reactome:R-HSA-2465938|Reactome:R-HSA-2454113|Reactome:R-HSA-2464809 molecular_function owl:Class GO:0019840 biolink:NamedThing isoprenoid binding Binding to an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902798 biolink:NamedThing positive regulation of snoRNA processing Any process that activates or increases the frequency, rate or extent of snoRNA processing. tmpzr1t_l9r_go_relaxed.owl up-regulation of snoRNA processing|upregulation of snoRNA processing|up regulation of snoRNA processing|activation of snoRNA processing mah 2014-03-24T12:47:20Z biological_process owl:Class GO:0033603 biolink:NamedThing positive regulation of dopamine secretion Any process that activates or increases the frequency, rate or extent of the regulated release of dopamine. tmpzr1t_l9r_go_relaxed.owl stimulation of dopamine secretion|upregulation of dopamine secretion|activation of dopamine secretion|up-regulation of dopamine secretion|up regulation of dopamine secretion biological_process owl:Class GO:0045690 biolink:NamedThing positive regulation of antipodal cell differentiation Any process that activates or increases the frequency, rate or extent of antipodal cell differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of antipodal cell differentiation|activation of antipodal cell differentiation|up regulation of antipodal cell differentiation|up-regulation of antipodal cell differentiation|upregulation of antipodal cell differentiation biological_process owl:Class GO:0045688 biolink:NamedThing regulation of antipodal cell differentiation Any process that modulates the frequency, rate or extent of antipodal cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017008 biolink:NamedThing protein-phycobiliviolin linkage The linkage of the chromophore phycobiliviolin to phycoerythrocyanin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0258 biological_process owl:Class GO:0033033 biolink:NamedThing negative regulation of myeloid cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of myeloid cell apoptosis|negative regulation of myeloid cell apoptosis|down-regulation of myeloid cell apoptosis|downregulation of myeloid cell apoptosis|inhibition of myeloid cell apoptosis biological_process owl:Class GO:0060779 biolink:NamedThing secondary leaflet morphogenesis The process in which the secondary leaflet attains its shape. A secondary leaflet develops by branching or division of a primary leaflet. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T07:19:02Z biological_process owl:Class GO:0060794 biolink:NamedThing leaflet morphogenesis The process in which the anatomical structures of the leaflet are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T02:58:14Z biological_process owl:Class GO:0002809 biolink:NamedThing negative regulation of antibacterial peptide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate, or extent of antibacterial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of antibacterial peptide biosynthetic process|downregulation of antibacterial peptide biosynthetic process|inhibition of antibacterial peptide biosynthetic process|down regulation of antibacterial peptide biosynthetic process biological_process owl:Class GO:0002806 biolink:NamedThing negative regulation of antimicrobial peptide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl inhibition of antimicrobial peptide biosynthetic process|down regulation of antimicrobial peptide biosynthetic process|down-regulation of antimicrobial peptide biosynthetic process|downregulation of antimicrobial peptide biosynthetic process biological_process owl:Class GO:0009173 biolink:NamedThing pyrimidine ribonucleoside monophosphate metabolic process The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside monophosphate metabolism biological_process owl:Class GO:0097106 biolink:NamedThing postsynaptic density organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. tmpzr1t_l9r_go_relaxed.owl post-synaptic density organization|post synaptic density organization|PSD organization|postsynaptic density organisation pr 2011-07-27T05:17:12Z biological_process owl:Class GO:1902309 biolink:NamedThing negative regulation of peptidyl-serine dephosphorylation Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-serine dephosphorylation. tmpzr1t_l9r_go_relaxed.owl downregulation of peptidyl-serine dephosphorylation|down regulation of peptidyl-serine dephosphorylation|inhibition of peptidyl-serine dephosphorylation|down-regulation of peptidyl-serine dephosphorylation rl 2013-07-19T10:35:07Z biological_process owl:Class GO:0006393 biolink:NamedThing termination of mitochondrial transcription The process in which the synthesis of an RNA molecule using a mitochondrial DNA template is completed. tmpzr1t_l9r_go_relaxed.owl RNA transcription termination from mitochondrial promoter|mitochondrial transcription termination biological_process owl:Class GO:0006353 biolink:NamedThing DNA-templated transcription, termination The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. tmpzr1t_l9r_go_relaxed.owl termination of DNA-dependent transcription|DNA-dependent transcription, termination|transcription termination factor activity|transcription termination from bacterial-type RNA polymerase promoter|transcription termination, DNA-dependent|transcriptional complex disassembly|termination of transcription, DNA-dependent GO:0001125 biological_process owl:Class GO:0071816 biolink:NamedThing tail-anchored membrane protein insertion into ER membrane A process of protein insertion into the endoplasmic reticulum (ER) membrane in which a tail-anchored (TA) transmembrane protein is incorporated into an endoplasmic reticulum (ER) membrane. TA transmembrane protein, also named type II transmembrane proteins, contain a single C- terminal transmembrane region. tmpzr1t_l9r_go_relaxed.owl type II transmembrane protein insertion into ER membrane|tail-anchored membrane protein insertion into endoplasmic reticulum membrane|protein insertion of tail-anchored membrane proteins into ER membrane mah 2010-09-06T04:55:16Z biological_process owl:Class GO:0045048 biolink:NamedThing protein insertion into ER membrane The process that results in incorporation of a protein into an endoplasmic reticulum (ER) membrane. It depends on specific topogenic sequences of amino acids that ensure that a protein acquires the proper orientation during its insertion into the ER membrane. tmpzr1t_l9r_go_relaxed.owl integral ER membrane protein positioning|integral ER membrane protein localization|localization of protein in ER membrane|protein insertion into endoplasmic reticulum membrane|protein-endoplasmic reticulum insertion|protein-ER insertion|positioning of protein in ER membrane biological_process owl:Class GO:0043278 biolink:NamedThing response to morphine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014072 biolink:NamedThing response to isoquinoline alkaloid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isoquinoline alkaloid stimulus. An isoquinoline alkaloid is any member of a group of compounds with the heterocyclic ring structure of benzo(c)pyridine which is a structure characteristic of the group of opium alkaloids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090653 biolink:NamedThing apical recycling endosome Tubulo-vesicular structure located in the apical cytoplasm that participates in apical cargo recycling in polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-01T15:46:19Z cellular_component owl:Class GO:0071986 biolink:NamedThing Ragulator complex A vacuolar membrane-anchored guanine nucleotide exchange factor (GEF) complex for the Rag GTPases (Gtr1-Gtr2 GTPase complex GO:1990131) in TORC1 signalling pathway. In human, Ragulator is comprised of the membrane anchor subunit LAMTOR1 (Meh1p in S. cerevisiae, Lam1 in S. pombe), a GEF subunit LAMTOR2 ( Slm4 in S. cerevisiae , Lam2 in S. pombe ) , LAMTOR3 (no S. cerevisiae ortholog identified, Lam3 in S. pombe) , LAMTOR4 (no S. cerevisiae ortholog identified, Lam4 in S. pombe), and LAMTOR5 (no S. cerevisiae or S. pombe ortholog identified). tmpzr1t_l9r_go_relaxed.owl EGO-GSE complex|EGO complex|MAPKSP1/ROBLD3/C11orf59 complex|GTPase-containing complex for Gap1p sorting in the endosome|Rag GEF|GSE complex https://github.com/geneontology/go-ontology/issues/20822|https://github.com/geneontology/go-ontology/issues/21777 mah 2010-10-22T02:42:13Z GO:0034449|GO:0034448 cellular_component owl:Class GO:0008516 biolink:NamedThing hexose uniporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexose(out) = hexose(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015149 biolink:NamedThing hexose transmembrane transporter activity Enables the transfer of a hexose sugar, a monosaccharide with 6 carbon atoms, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5638222|Reactome:R-HSA-189242 molecular_function owl:Class GO:0032061 biolink:NamedThing negative regulation of translation in response to osmotic stress Any process that stops, prevents or reduces the rate of translation as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl downregulation of translation in response to osmotic stress|down regulation of translation in response to osmotic stress|down-regulation of translation in response to osmotic stress|inhibition of translation in response to osmotic stress biological_process owl:Class GO:0043557 biolink:NamedThing regulation of translation in response to osmotic stress Any process that modulates the frequency, rate or extent of the frequency, rate or extent of translation as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032687 biolink:NamedThing negative regulation of interferon-alpha production Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-alpha production. tmpzr1t_l9r_go_relaxed.owl down regulation of interferon-alpha production|inhibition of interferon-alpha production|down-regulation of interferon-alpha production|negative regulation of interferon-alpha secretion|downregulation of interferon-alpha production|negative regulation of interferon-alpha biosynthetic process GO:0045355|GO:1902740 biological_process owl:Class GO:0032647 biolink:NamedThing regulation of interferon-alpha production Any process that modulates the frequency, rate, or extent of interferon-alpha production. tmpzr1t_l9r_go_relaxed.owl regulation of interferon-alpha secretion|regulation of interferon-alpha biosynthetic process GO:0045354|GO:1902739 biological_process owl:Class GO:0042120 biolink:NamedThing alginic acid metabolic process The chemical reactions and pathways involving alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds). tmpzr1t_l9r_go_relaxed.owl alginate metabolism|alginic acid metabolism|alginate metabolic process biological_process owl:Class GO:0071267 biolink:NamedThing L-methionine salvage Any process that generates L-methionine from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-09T04:36:49Z biological_process owl:Class GO:0043102 biolink:NamedThing amino acid salvage Any process which produces an amino acid from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015009 biolink:NamedThing corrin metabolic process The chemical reactions and pathways involving corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule. tmpzr1t_l9r_go_relaxed.owl corrin metabolism biological_process owl:Class GO:0033013 biolink:NamedThing tetrapyrrole metabolic process The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. tmpzr1t_l9r_go_relaxed.owl tetrapyrrole metabolism biological_process owl:Class GO:0018244 biolink:NamedThing protein N-linked glycosylation via tryptophan The glycosylation of protein via peptidyl-tryptophan, 1'-glycosyl-L-tryptophan; results in the formation of an (S)-2-amino-3-(1-D-mannopyranosyloxy-1H-indol-3-yl)propanoic acid residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked glycosylation via tryptophan RESID:AA0156 biological_process owl:Class GO:0006487 biolink:NamedThing protein N-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked glycosylation|N-glycan biosynthesis|N-glycan metabolism RESID:AA0151|RESID:AA0327|RESID:AA0156 biological_process owl:Class GO:1901528 biolink:NamedThing hydrogen peroxide mediated signaling pathway involved in stomatal movement Any hydrogen peroxide mediated signaling pathway that is involved in stomatal movement. tmpzr1t_l9r_go_relaxed.owl H2O2 mediated signaling pathway involved in stomatal movement|hydrogen peroxide mediated signalling pathway involved in stomatal movement tb 2012-10-23T23:15:25Z biological_process owl:Class GO:0071588 biolink:NamedThing hydrogen peroxide mediated signaling pathway A series of molecular signals mediated by the detection of hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide mediated signalling pathway|H2O2 mediated signaling pathway mah 2010-01-29T11:18:58Z biological_process owl:Class GO:1990170 biolink:NamedThing stress response to cadmium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by a cadmium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to cadmium ion stress|stress response to cadmium|response to cadmium toxicity pr 2013-08-14T12:55:45Z biological_process owl:Class GO:0046148 biolink:NamedThing pigment biosynthetic process The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. tmpzr1t_l9r_go_relaxed.owl pigment formation|pigment synthesis|pigment biosynthesis|pigment anabolism biological_process owl:Class GO:0048685 biolink:NamedThing negative regulation of collateral sprouting of intact axon in response to injury Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon. tmpzr1t_l9r_go_relaxed.owl down-regulation of collateral sprouting of intact axon in response to injury|down regulation of collateral sprouting of intact axon in response to injury|downregulation of collateral sprouting of intact axon in response to injury|inhibition of collateral sprouting of intact axon in response to injury biological_process owl:Class GO:0008466 biolink:NamedThing glycogenin glucosyltransferase activity Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin. tmpzr1t_l9r_go_relaxed.owl glycogenin activity|1,4alpha-glucan-protein synthase (UDP-forming) activity|priming glucosyltransferase activity|alpha-1,4-glucan-protein synthase (UDP-forming) activity|UDP-glucose:glycogenin glucosyltransferase activity|UDP-alpha-D-glucose:glycogenin alpha-D-glucosyltransferase activity RHEA:23360|Reactome:R-HSA-3322014|Reactome:R-HSA-3814838|MetaCyc:GLYCOGENIN-GLUCOSYLTRANSFERASE-RXN|Reactome:R-HSA-3322025|Reactome:R-HSA-3322019|EC:2.4.1.186|Reactome:R-HSA-3322003 GO:0047210 molecular_function owl:Class GO:1901200 biolink:NamedThing negative regulation of calcium ion transport into cytosol involved in cellular response to salt stress Any negative regulation of calcium ion transport into cytosol that is involved in cellular response to salt stress. tmpzr1t_l9r_go_relaxed.owl negative regulation of calcium ion transport into cytosol involved in cellular response to ionic osmotic stress|negative regulation of calcium ion transport into cytosol involved in cellular salinity response al 2012-07-27T11:11:09Z biological_process owl:Class GO:0010523 biolink:NamedThing negative regulation of calcium ion transport into cytosol Any process that decreases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120076 biolink:NamedThing negative regulation of endocardial cushion cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of endocardial cushion cell differentiation. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-26T23:37:23Z biological_process owl:Class GO:1905208 biolink:NamedThing negative regulation of cardiocyte differentiation Any process that stops, prevents or reduces the frequency, rate or extent of cardiocyte differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of cardiac cell differentiation|down-regulation of cardiocyte differentiation|inhibition of heart cell differentiation|inhibition of cardiac cell differentiation|down regulation of heart cell differentiation|down-regulation of cardiac cell differentiation|down-regulation of heart cell differentiation|down regulation of cardiac cell differentiation|down regulation of cardiocyte differentiation|inhibition of cardiocyte differentiation|downregulation of heart cell differentiation|downregulation of cardiocyte differentiation|negative regulation of cardiac cell differentiation|negative regulation of heart cell differentiation bc 2016-06-02T07:20:09Z biological_process owl:Class GO:0060753 biolink:NamedThing regulation of mast cell chemotaxis Any process that modulates the rate, frequency or extent of mast cell chemotaxis. Mast cell chemotaxis is the movement of a mast cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:36:06Z biological_process owl:Class GO:1901941 biolink:NamedThing (+)-epi-alpha-bisabolol metabolic process The chemical reactions and pathways involving (+)-epi-alpha-bisabolol. tmpzr1t_l9r_go_relaxed.owl (+)-epi-alpha-bisabolol metabolism ms 2013-02-18T14:55:36Z biological_process owl:Class GO:0006714 biolink:NamedThing sesquiterpenoid metabolic process The chemical reactions and pathways involving sesquiterpenoid compounds, terpenoids with three isoprene units. tmpzr1t_l9r_go_relaxed.owl sesquiterpenoid metabolism biological_process owl:Class GO:0015265 biolink:NamedThing urea channel activity Enables the facilitated diffusion of urea (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-507873|Reactome:R-HSA-507875 molecular_function owl:Class GO:0015204 biolink:NamedThing urea transmembrane transporter activity Enables the transfer of urea from one side of a membrane to the other. Urea is the water soluble compound H2N-CO-NH2. tmpzr1t_l9r_go_relaxed.owl urea transporter activity Reactome:R-HSA-444126|RHEA:32799 GO:0015287 molecular_function owl:Class GO:0072290 biolink:NamedThing epithelial cell migration involved in metanephric nephron tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to metanephric nephron tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:52:29Z biological_process owl:Class GO:0030206 biolink:NamedThing chondroitin sulfate biosynthetic process The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate biosynthesis|chondroitin sulfate synthesis|chondroitin sulfate anabolism|chondroitin sulfate formation|chondroitin sulfate biosynthesis|chondroitin sulphate biosynthetic process biological_process owl:Class GO:0006024 biolink:NamedThing glycosaminoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. tmpzr1t_l9r_go_relaxed.owl glycosaminoglycan biosynthesis|glycosaminoglycan anabolism|glycosaminoglycan formation|glycosaminoglycan synthesis biological_process owl:Class GO:0042390 biolink:NamedThing gibberellic acid mediated signaling pathway, G-alpha-independent A series of molecular signals mediated by the detection of gibberellic acid and not dependent on the coupling of the alpha subunit of G proteins to the hormone receptors. tmpzr1t_l9r_go_relaxed.owl gibberellic acid mediated signalling, G-alpha-independent biological_process owl:Class GO:1905827 biolink:NamedThing positive regulation of selenocysteine metabolic process Any process that activates or increases the frequency, rate or extent of selenocysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of selenocysteine metabolism|up regulation of selenocysteine metabolic process|upregulation of selenocysteine metabolic process|positive regulation of selenocysteine metabolism|up regulation of selenocysteine metabolism|activation of selenocysteine metabolic process|upregulation of selenocysteine metabolism|up-regulation of selenocysteine metabolic process|activation of selenocysteine metabolism sl 2017-01-16T19:01:50Z biological_process owl:Class GO:0060633 biolink:NamedThing negative regulation of transcription initiation from RNA polymerase II promoter Any process that decreases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T03:11:26Z biological_process owl:Class GO:0042945 biolink:NamedThing D-serine transmembrane transporter activity Enables the transfer of D-serine from one side of a membrane to the other. D-serine is the D-enantiomer of 2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-serine permease activity|D-serine transporter activity molecular_function owl:Class GO:0042943 biolink:NamedThing D-amino acid transmembrane transporter activity Enables the transfer of D-amino acids from one side of a membrane to the other. D-amino acids are the D-enantiomers of amino acids. tmpzr1t_l9r_go_relaxed.owl D-amino acid transporter activity molecular_function owl:Class GO:1903233 biolink:NamedThing regulation of calcium ion-dependent exocytosis of neurotransmitter Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis of neurotransmitter. tmpzr1t_l9r_go_relaxed.owl An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 (IMP) pad 2014-07-31T11:54:33Z biological_process owl:Class GO:0009357 biolink:NamedThing protein-N(PI)-phosphohistidine-sugar phosphotransferase complex An enzyme complex that catalyzes the transfer of a phosphate from protein N(PI)-phosphohistidine to a sugar molecule. It is enzyme II of the phosphotransferase system. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010005 biolink:NamedThing cortical microtubule, transverse to long axis Arrays of microtubules underlying and connected to the plasma membrane, in the cortical cytosol, oriented mainly with their axes transverse to the long axis of the cell (and root in plants). In plants it influences the direction of cellulose microfibril deposition. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0055028 biolink:NamedThing cortical microtubule Arrays of microtubules underlying and connected to the plasma membrane in the cortical cytosol. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015715 biolink:NamedThing nucleotide-sulfate transport The directed movement of nucleotide sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl nucleotide-sulphate transport biological_process owl:Class GO:0045962 biolink:NamedThing positive regulation of development, heterochronic Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and increases the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl stimulation of development, heterochronic|activation of development, heterochronic|upregulation of development, heterochronic|up regulation of development, heterochronic|up-regulation of development, heterochronic biological_process owl:Class GO:0040034 biolink:NamedThing regulation of development, heterochronic Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl developmental timing|temporal regulation of development|heterochronic regulation of development biological_process owl:Class GO:1901150 biolink:NamedThing vistamycin metabolic process The chemical reactions and pathways involving vistamycin. tmpzr1t_l9r_go_relaxed.owl ribostamycin metabolic process|vistamycin metabolism|ribostamycin metabolism yaf 2012-07-17T04:26:45Z biological_process owl:Class GO:0015548 biolink:NamedThing organomercurial transmembrane transporter activity Enables the transfer of organomercurial compounds from one side of a membrane to the other. Organomercurial substances are any organic compound containing a mercury atom. tmpzr1t_l9r_go_relaxed.owl organomercurial transporter activity|carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity molecular_function owl:Class GO:0009007 biolink:NamedThing site-specific DNA-methyltransferase (adenine-specific) activity Catalysis of the reaction: S-adenosyl-L-methionine + DNA adenine = S-adenosyl-L-homocysteine + DNA 6-methylaminopurine. tmpzr1t_l9r_go_relaxed.owl DNA adenine methylase|N-6 adenine-specific DNA methylase activity|EcoRI methylase|modification methylase activity|restriction-modification system activity MetaCyc:2.1.1.72-RXN|EC:2.1.1.72|RHEA:15197 molecular_function owl:Class GO:1905035 biolink:NamedThing negative regulation of antifungal innate immune response Any process that stops, prevents or reduces the frequency, rate or extent of an antifungal innate immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of antifungal innate immune response|down regulation of antifungal innate immune response|downregulation of antifungal innate immune response|down-regulation of antifungal innate immune response dph 2016-03-07T20:08:05Z biological_process owl:Class GO:2000244 biolink:NamedThing regulation of FtsZ-dependent cytokinesis Any process that modulates the frequency, rate or extent of FtsZ-dependent cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of prokaryotic fission|regulation of prokaryote-type cytokinesis mah 2010-11-10T02:46:36Z biological_process owl:Class GO:0010218 biolink:NamedThing response to far red light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl response to far red light stimulus biological_process owl:Class GO:0009157 biolink:NamedThing deoxyribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside monophosphate synthesis|deoxyribonucleoside monophosphate anabolism|deoxyribonucleoside monophosphate biosynthesis|deoxyribonucleoside monophosphate formation biological_process owl:Class GO:0009162 biolink:NamedThing deoxyribonucleoside monophosphate metabolic process The chemical reactions and pathways involving a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside monophosphate metabolism biological_process owl:Class GO:0000768 biolink:NamedThing syncytium formation by plasma membrane fusion The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl cell fusion biological_process owl:Class GO:0006949 biolink:NamedThing syncytium formation The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046807 biolink:NamedThing viral scaffold assembly and maintenance The assembly and maintenance of the viral scaffold around which the viral capsid is constructed. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'viral scaffold ; GO:0046806'. biological_process owl:Class GO:0060827 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation Any process that modulates the rate, frequency, or extent of Wnt signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation|regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation|regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:48:52Z biological_process owl:Class GO:0106335 biolink:NamedThing tRNA (carboxymethyluridine(34)-5-O)-methyltransferase activity Catalysis of the reaction: carboxymethyluridine34 in tRNA + S-adenosyl-L-methionine = 5-(2-methoxy-2-oxoethyl)uridine34 in tRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.229|RHEA:43208 hjd 2020-10-27T21:34:30Z molecular_function owl:Class GO:0052158 biolink:NamedThing modulation by symbiont of host resistance gene-dependent defense response Any process in which a symbiont modulates the frequency, rate or extent of the resistance gene-dependent defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of pathogen-race/host plant cultivar-specific resistance in symbiont|modulation by organism of resistance gene-dependent defense response of other organism involved in symbiotic interaction|modulation by organism of defense response in host by specific elicitors|modulation by organism of host gene-for-gene resistance GO:0052297 biological_process owl:Class GO:0090222 biolink:NamedThing centrosome-templated microtubule nucleation The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates from the centrosome. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-13T10:52:36Z biological_process owl:Class GO:0051418 biolink:NamedThing microtubule nucleation by microtubule organizing center The 'de novo' formation of a microtubule, mediated by the microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl MTOC-mediated microtubule nucleation|microtubule nucleation by microtubule organising centre|microtubule organizing center-mediated microtubule nucleation|microtubule nucleation by MTOC biological_process owl:Class GO:0008703 biolink:NamedThing 5-amino-6-(5-phosphoribosylamino)uracil reductase activity Catalysis of the reaction: 5-amino-6-(5-phosphoribitylamino)uracil + NADP(+) = 5-amino-6-(5-phosphoribosylamino)uracil + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl aminodioxyphosphoribosylaminopyrimidine reductase activity|5-amino-6-(5'-phosphoribosylamino)uracil reductase activity|5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase activity EC:1.1.1.193|KEGG_REACTION:R03458|RHEA:17845|MetaCyc:RIBOFLAVINSYNREDUC-RXN molecular_function owl:Class GO:0044742 biolink:NamedThing envenomation resulting in modulation of sensory perception of pain in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the modulation of the sensory perception of pain in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of sensory perception of pain in other organism jl 2012-11-07T14:26:38Z biological_process owl:Class GO:0061567 biolink:NamedThing dCMP phosphorylation The process of introducing a phosphate group into dCMP, deoxycytidine monophosphate, to produce dCDP. Addition of two phosphate groups produces dCTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T12:54:21Z biological_process owl:Class GO:0046940 biolink:NamedThing nucleoside monophosphate phosphorylation The process of introducing one or more phosphate groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901147 biolink:NamedThing mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis Any mesenchymal cell apoptotic process that is involved in metanephric nephron morphogenesis. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-13T02:41:12Z biological_process owl:Class GO:0097152 biolink:NamedThing mesenchymal cell apoptotic process Any apoptotic process in a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types. tmpzr1t_l9r_go_relaxed.owl mesenchymal cell apoptosis pr 2011-09-06T02:31:59Z biological_process owl:Class GO:0060390 biolink:NamedThing regulation of SMAD protein signal transduction Any process that modulates the rate, frequency or extent of SMAD protein signal transduction. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl SMAD protein import into nucleus|regulation of SMAD protein nuclear translocation GO:0007184 biological_process owl:Class GO:0043055 biolink:NamedThing maintenance of dauer Maintenance of a nematode during the facultative diapause of the dauer (enduring) larval stage of nematode development. tmpzr1t_l9r_go_relaxed.owl maintenance of dormancy in the nematode biological_process owl:Class GO:1904027 biolink:NamedThing negative regulation of collagen fibril organization Any process that stops, prevents or reduces the frequency, rate or extent of collagen fibril organization. tmpzr1t_l9r_go_relaxed.owl down regulation of collagen fibril organization|negative regulation of collagen fibril organisation|down-regulation of collagen fibril organization|downregulation of collagen fibril organisation|down-regulation of fibrillar collagen organization|inhibition of collagen fibril organization|down regulation of fibrillar collagen organization|inhibition of collagen fibril organisation|down-regulation of collagen fibril organisation|down regulation of collagen fibril organisation|downregulation of collagen fibril organization|negative regulation of fibrillar collagen organization|downregulation of fibrillar collagen organization|inhibition of fibrillar collagen organization ae 2015-03-12T12:36:59Z biological_process owl:Class GO:1903054 biolink:NamedThing negative regulation of extracellular matrix organization Any process that stops, prevents or reduces the frequency, rate or extent of extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl downregulation of extracellular matrix organisation|down regulation of extracellular matrix organization and biogenesis|down-regulation of extracellular matrix organisation|inhibition of extracellular matrix organisation|negative regulation of extracellular matrix organization and biogenesis|downregulation of extracellular matrix organization and biogenesis|inhibition of extracellular matrix organization|inhibition of extracellular matrix organization and biogenesis|downregulation of extracellular matrix organization|negative regulation of extracellular matrix organisation|down regulation of extracellular matrix organization|down-regulation of extracellular matrix organization and biogenesis|down regulation of extracellular matrix organisation|down-regulation of extracellular matrix organization rl 2014-05-23T17:15:47Z biological_process owl:Class GO:0002717 biolink:NamedThing positive regulation of natural killer cell mediated immunity Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl up regulation of natural killer cell mediated immunity|stimulation of natural killer cell mediated immunity|positive regulation of natural killer cell activity|positive regulation of NK cell mediated immunity|positive regulation of NK cell activity|upregulation of natural killer cell mediated immunity|activation of natural killer cell mediated immunity|up-regulation of natural killer cell mediated immunity GO:0045846 biological_process owl:Class GO:0047802 biolink:NamedThing cysteine-conjugate transaminase activity Catalysis of the reaction: 2-oxoglutarate + S-(4-bromophenyl)-L-cysteine = (4-bromophenylsulfanyl)pyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl cysteine-conjugate alpha-ketoglutarate transaminase (CAT-1)|cysteine conjugate aminotransferase activity|S-(4-bromophenyl)-L-cysteine:2-oxoglutarate aminotransferase activity KEGG_REACTION:R04338|RHEA:13485|MetaCyc:CYSTEINE-CONJUGATE-TRANSAMINASE-RXN|EC:2.6.1.75 molecular_function owl:Class GO:0042371 biolink:NamedThing vitamin K biosynthetic process The chemical reactions and pathways resulting in the formation of any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. tmpzr1t_l9r_go_relaxed.owl naphthoquinone metabolic process|vitamin K synthesis|vitamin K formation|vitamin K anabolism|vitamin K biosynthesis|naphthoquinone metabolism biological_process owl:Class GO:0004914 biolink:NamedThing interleukin-5 receptor activity Combining with interleukin-5 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-5R|IL-5 receptor activity molecular_function owl:Class GO:0016049 biolink:NamedThing cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. tmpzr1t_l9r_go_relaxed.owl non-developmental growth of a unicellular organism|metabolism resulting in cell growth|growth of cell|cell expansion|metabolic process resulting in cell growth|cellular growth|non-developmental cell growth GO:0048591 biological_process owl:Class GO:1990949 biolink:NamedThing metaphase/anaphase transition of meiosis I The cell cycle process in which a cell progresses from metaphase to anaphase as part of meiosis I. tmpzr1t_l9r_go_relaxed.owl meiosis I metaphase/anaphase transition|first meiotic metaphase/anaphase transition mah 2016-04-25T15:27:32Z biological_process owl:Class GO:0061982 biolink:NamedThing meiosis I cell cycle process A process that contributes to the first meiotic division. The first meiotic division is the reductive division resulting in the separation of homologous chromosome pairs. tmpzr1t_l9r_go_relaxed.owl first meiotic cell division dph 2018-02-14T22:27:20Z biological_process owl:Class GO:2000885 biolink:NamedThing galactoglucomannan catabolic process The chemical reactions and pathways resulting in the breakdown of a galactoglucomannan. tmpzr1t_l9r_go_relaxed.owl galactoglucomannan catabolism jl 2011-07-28T09:24:11Z biological_process owl:Class GO:0010392 biolink:NamedThing galactoglucomannan metabolic process The chemical reactions and pathways involving galactoglucomannan, a polysaccharide composed of D-glucose, D-galactose and D-mannose. The mannose units form the backbone structure (a linear main chain) decorated with a mixture of D-glucose and D-galactose side-units. tmpzr1t_l9r_go_relaxed.owl galactoglucomannan metabolism biological_process owl:Class GO:0047878 biolink:NamedThing erythritol kinase activity Catalysis of the reaction: ATP + erythritol = D-erythritol 4-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:erythritol 4-phosphotransferase activity|erythritol kinase (phosphorylating) KEGG_REACTION:R02430|RHEA:20708|EC:2.7.1.27|MetaCyc:ERYTHRITOL-KINASE-RXN molecular_function owl:Class GO:0043413 biolink:NamedThing macromolecule glycosylation The covalent attachment of a glycosyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098549 biolink:NamedThing somatic ring canal A stable intercellular bridge between somatic cells. Examples include the intercellular bridges between ovarian follicle cells in insects and between imaginal disc cells in insects. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045171 biolink:NamedThing intercellular bridge A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903895 biolink:NamedThing negative regulation of IRE1-mediated unfolded protein response Any process that stops, prevents or reduces the frequency, rate or extent of the IRE1-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl down regulation of IRE1 signaling in response to endoplasmic reticulum stress|inhibition of IRE1 branch of UPR|negative regulation of ERN1-mediated unfolded protein response|down-regulation of IRE1 signaling in response to endoplasmic reticulum stress|down-regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|down regulation of UPR signaling by IRE1 stress sensor|down regulation of IRE1p unfolded protein response|downregulation of IRE1 signaling in response to endoplasmic reticulum stress|downregulation of IRE1p unfolded protein response|down regulation of IRE1 branch of UPR|inhibition of IRE1alpha unfolded protein response|inhibition of IRE1p unfolded protein response|down regulation of IRE1alpha unfolded protein response|downregulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|negative regulation of IRE1alpha unfolded protein response|negative regulation of IRE1p unfolded protein response|negative regulation of IRE1 signaling in response to endoplasmic reticulum stress|inhibition of IRE1 signaling in response to endoplasmic reticulum stress|downregulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|negative regulation of UPR signaling by IRE1 stress sensor|down regulation of IRE1-mediated unfolded protein response|down-regulation of UPR signaling by IRE1 stress sensor|downregulation of IRE1alpha unfolded protein response|negative regulation of IRE1 branch of UPR|negative regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|down-regulation of IRE1p unfolded protein response|negative regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|down-regulation of IRE1alpha unfolded protein response|inhibition of endoplasmic reticulum unfolded protein response; IRE1 signaling|downregulation of IRE1 branch of UPR|downregulation of IRE1-mediated unfolded protein response|down regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|down-regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|inhibition of IRE1-mediated unfolded protein response|inhibition of inositol-requiring transmembrane kinase/endonuclease signal transduction|down-regulation of IRE1 branch of UPR|down-regulation of IRE1-mediated unfolded protein response|down regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|inhibition of UPR signaling by IRE1 stress sensor|downregulation of UPR signaling by IRE1 stress sensor bf 2015-02-09T10:17:55Z biological_process owl:Class GO:0062241 biolink:NamedThing double strand break-nuclear membrane anchor activity Binding to DNA double strand breaks and the nuclear inner membrane, in order to facilitate DNA repair. tmpzr1t_l9r_go_relaxed.owl DNA repair factory dph 2020-04-20T18:23:59Z molecular_function owl:Class GO:0002804 biolink:NamedThing positive regulation of antifungal peptide production Any process that activates or increases the frequency, rate, or extent of antifungal peptide production. tmpzr1t_l9r_go_relaxed.owl upregulation of antifungal peptide production|up-regulation of antifungal peptide production|activation of antifungal peptide production|up regulation of antifungal peptide production|stimulation of antifungal peptide production biological_process owl:Class GO:0002225 biolink:NamedThing positive regulation of antimicrobial peptide production Any process that activates or increases the frequency, rate, or extent of antimicrobial peptide production. tmpzr1t_l9r_go_relaxed.owl stimulation of antimicrobial peptide production|up-regulation of antimicrobial peptide production|antimicrobial peptide induction|upregulation of antimicrobial peptide production|activation of antimicrobial peptide production|up regulation of antimicrobial peptide production biological_process owl:Class GO:0009761 biolink:NamedThing CAM photosynthesis The combination of atmospheric CO2 with a 3-carbon molecule phosphoenol pyruvate (PEP) to make malic acid. The malic acid is then passed into the vacuole where it is stored until daylight, when it is shuttled back out to be used as a substrate in the light reaction of photosynthesis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Crassulacean_acid_metabolism biological_process owl:Class GO:0042753 biolink:NamedThing positive regulation of circadian rhythm Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. tmpzr1t_l9r_go_relaxed.owl upregulation of circadian rhythm|up regulation of circadian rhythm|activation of circadian rhythm|up-regulation of circadian rhythm|stimulation of circadian rhythm biological_process owl:Class GO:0102285 biolink:NamedThing 1-deoxy-11-oxopentalenate oxygenase activity Catalysis of the reaction: 1-deoxy-11-oxopentalenate + O2 + NADPH + H+ = pentalenolactone D + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.170|RHEA:34635|MetaCyc:RXN-12654 molecular_function owl:Class GO:0046794 biolink:NamedThing transport of virus The directed movement of a virus, or part of a virus, into, out of, or within a host cell. tmpzr1t_l9r_go_relaxed.owl viral transport|virion transport biological_process owl:Class GO:0047976 biolink:NamedThing hamamelose kinase activity Catalysis of the reaction: D-hamamelose + ATP = D-hamamelose 2'-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl hamamelose kinase (phosphorylating)|ATP:D-hamamelose 2'-phosphotransferase activity|hamamelosekinase (ATP: hamamelose 2'-phosphotransferase)|ATP/hamamelose 2'-phosphotransferase activity RHEA:22796|MetaCyc:HAMAMELOSE-KINASE-RXN|EC:2.7.1.102|KEGG_REACTION:R03766 molecular_function owl:Class GO:0007306 biolink:NamedThing eggshell chorion assembly Construction of the chorion portion of the eggshell, which comprises the channels for gas exchange in an insect eggshell. tmpzr1t_l9r_go_relaxed.owl insect chorion formation|eggshell chorion formation biological_process owl:Class GO:0061845 biolink:NamedThing neuron projection branch point The location where a secondary projection arises from a neuron projection. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071798 biolink:NamedThing response to prostaglandin D Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin D stimulus. tmpzr1t_l9r_go_relaxed.owl response to prostaglandin D stimulus mah 2010-09-03T10:48:03Z biological_process owl:Class GO:0047112 biolink:NamedThing pyruvate oxidase activity Catalysis of the reaction: H(+) + O(2) + phosphate + pyruvate = acetyl phosphate + CO(2) + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl phosphate-dependent pyruvate oxidase activity|pyruvic oxidase activity|pyruvate:oxygen 2-oxidoreductase (phosphorylating) MetaCyc:1.2.3.3-RXN|EC:1.2.3.3|KEGG_REACTION:R00207|RHEA:20848 molecular_function owl:Class GO:0030273 biolink:NamedThing melanin-concentrating hormone receptor activity Combining with the cyclic peptide hormone melanin-concentrating hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl MCH receptor molecular_function owl:Class GO:0016500 biolink:NamedThing protein-hormone receptor activity Combining with a protein hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001796 biolink:NamedThing regulation of type IIa hypersensitivity Any process that modulates the frequency, rate, or extent of type IIa hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902348 biolink:NamedThing cellular response to strigolactone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a strigolactone stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to strigolactone analog GR24 dhl 2013-08-08T18:45:05Z biological_process owl:Class GO:1902347 biolink:NamedThing response to strigolactone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a strigolactone stimulus. tmpzr1t_l9r_go_relaxed.owl response to strigolactone analog GR24 dhl 2013-08-08T18:44:57Z biological_process owl:Class GO:0010991 biolink:NamedThing negative regulation of SMAD protein complex assembly Any process that decreases the rate, frequency, or extent of SMAD protein complex assembly. SMAD protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-03T11:30:44Z biological_process owl:Class GO:0052597 biolink:NamedThing diamine oxidase activity Catalysis of the reaction: a diamine + H2O + O2 = a monoamine + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl diamine:oxygen oxidoreductase (deaminating) activity MetaCyc:RXN-9599|EC:1.4.3.22 molecular_function owl:Class GO:0010779 biolink:NamedThing meiotic DNA repair synthesis involved in meiotic gene conversion The synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process in which genetic information is transferred from one helix to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000711 biolink:NamedThing meiotic DNA repair synthesis During meiosis, the synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140329 biolink:NamedThing lysophospholipid translocation The movement of a lysophospholipid molecule from one leaflet of a membrane bilayer to the opposite leaflet. tmpzr1t_l9r_go_relaxed.owl pg 2019-05-03T07:26:52Z biological_process owl:Class GO:0051977 biolink:NamedThing lysophospholipid transport The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lysophospholipid is a phospholipid that lacks one of its fatty acyl chains; it is an intermediate formed during digestion of dietary and biliary phospholipids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015277 biolink:NamedThing kainate selective glutamate receptor activity An ionotropic glutamate receptor activity that exhibits fast gating by glutamate, acts by opening a cation channel permeable to sodium and potassium, and for which kainate is an agonist. tmpzr1t_l9r_go_relaxed.owl Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'ionotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'. molecular_function owl:Class GO:0004970 biolink:NamedThing ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'glutamate-gated ion channel activity ; GO:0005234' and 'cation channel activity ; GO:0005261'. molecular_function owl:Class GO:1901278 biolink:NamedThing D-ribose 5-phosphate metabolic process The chemical reactions and pathways involving D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-ribose 5-phosphate metabolism yaf 2012-08-17T14:59:58Z biological_process owl:Class GO:0019693 biolink:NamedThing ribose phosphate metabolic process The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar. tmpzr1t_l9r_go_relaxed.owl ribose phosphate metabolism biological_process owl:Class GO:0043376 biolink:NamedThing regulation of CD8-positive, alpha-beta T cell differentiation Any process that modulates the frequency, rate, or extent of CD8-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of CD8-positive T-cell differentiation|regulation of CD8-positive T lymphocyte differentiation|regulation of CD8-positive, alpha-beta T cell development|regulation of CD8-positive, alpha beta T-cell differentiation|regulation of CD8-positive T-lymphocyte differentiation|regulation of CD8-positive, alpha beta T-lymphocyte differentiation|regulation of CD8-positive, alpha beta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0046637 biolink:NamedThing regulation of alpha-beta T cell differentiation Any process that modulates the frequency, rate or extent of alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-beta T cell development|regulation of alpha-beta T-lymphocyte differentiation|regulation of alpha-beta T lymphocyte differentiation|regulation of alpha-beta T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0062134 biolink:NamedThing positive regulation of L-glutamine biosynthetic process Any process that starts, increases the frequency, rate or extent of L-glutamine biosynthesis. tmpzr1t_l9r_go_relaxed.owl dph 2019-06-27T13:49:29Z biological_process owl:Class GO:0002909 biolink:NamedThing negative regulation of peripheral B cell deletion Any process that stops, prevents, or reduces the frequency, rate, or extent of peripheral B cell deletion. tmpzr1t_l9r_go_relaxed.owl inhibition of peripheral B cell deletion|down-regulation of peripheral B cell deletion|downregulation of peripheral B cell deletion|down regulation of peripheral B cell deletion biological_process owl:Class GO:1905781 biolink:NamedThing negative regulation of phosphatidylserine exposure on apoptotic cell surface Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylserine exposure on apoptotic cell surface. tmpzr1t_l9r_go_relaxed.owl down regulation of externalization of phosphatidylserine|downregulation of phosphatidylserine exposure on apoptotic cell surface|inhibition of externalization of phosphatidylserine|down-regulation of phosphatidylserine exposure on apoptotic cell surface|down-regulation of externalization of phosphatidylserine|down regulation of phosphatidylserine exposure on apoptotic cell surface|inhibition of phosphatidylserine exposure on apoptotic cell surface|negative regulation of externalization of phosphatidylserine|downregulation of externalization of phosphatidylserine kmv 2017-01-04T15:19:14Z biological_process owl:Class GO:1905780 biolink:NamedThing regulation of phosphatidylserine exposure on apoptotic cell surface Any process that modulates the frequency, rate or extent of phosphatidylserine exposure on apoptotic cell surface. tmpzr1t_l9r_go_relaxed.owl regulation of externalization of phosphatidylserine kmv 2017-01-04T15:18:52Z biological_process owl:Class GO:0010819 biolink:NamedThing regulation of T cell chemotaxis Any process that modulates the rate, frequency or extent of T cell chemotaxis. T cell chemotaxis is the directed movement of a T cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102838 biolink:NamedThing 1-18:1-2-16:2-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:1-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.23|MetaCyc:RXN-8298 molecular_function owl:Class GO:2000726 biolink:NamedThing negative regulation of cardiac muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of cardiomyocyte differentiation|negative regulation of heart muscle cell differentiation vk 2011-06-08T10:51:11Z biological_process owl:Class GO:2000725 biolink:NamedThing regulation of cardiac muscle cell differentiation Any process that modulates the frequency, rate or extent of cardiac muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of heart muscle cell differentiation|regulation of cardiomyocyte differentiation vk 2011-06-08T10:51:06Z biological_process owl:Class GO:1900695 biolink:NamedThing regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process Any process that modulates the frequency, rate or extent of N',N'',N'''-triacetylfusarinine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of N',N'',N'''-triacetylfusarinine C formation|regulation of N',N'',N'''-triacetylfusarinine C synthesis|regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|regulation of N',N'',N'''-triacetylfusarinine C anabolism di 2012-05-22T04:54:24Z biological_process owl:Class GO:0006740 biolink:NamedThing NADPH regeneration A metabolic process that generates a pool of NADPH by the reduction of NADP+. tmpzr1t_l9r_go_relaxed.owl NADP (reduced) regeneration|reduced NADP regeneration|reduced nicotinamide adenine dinucleotide phosphate regeneration biological_process owl:Class GO:0075308 biolink:NamedThing negative regulation of conidium formation Any process that stops, prevents, or reduces the frequency, rate or extent of conidium formation, a process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044790 biolink:NamedThing suppression of viral release by host A process in which a host organism stops, prevents or reduces the frequency, rate or extent of the release of a virus with which it is infected, from its cells. tmpzr1t_l9r_go_relaxed.owl inhibition of viral release from host cell|negative regulation by host of viral release from host cell|downregulation of release of virus from host|negative regulation of viral shedding|down regulation of release of virus from host|down-regulation of viral release|down-regulation of viral release from host cell|downregulation of viral release from host cell|inhibition of release of virus from host|down-regulation of viral shedding|down regulation of viral shedding|downregulation of viral release|negative regulation of viral release from host cell|negative regulation of viral release|negative regulation of viral exit|downregulation of viral shedding|negative regulation of release of virus from host|inhibition of viral release|down-regulation of release of virus from host|downregulation of viral exit|down regulation of viral release from host cell|down regulation of viral exit|down-regulation of viral exit|inhibition of viral shedding|down regulation of viral release|inhibition of viral exit https://github.com/geneontology/go-ontology/issues/22166 jl 2013-06-06T10:51:27Z GO:1902187 biological_process owl:Class GO:0042073 biolink:NamedThing intraciliary transport The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport involved in microtubule-based flagellum organisation|intraflagellar transport involved in cilium organization|intraflagellar transport|IFT Wikipedia:Intraflagellar_transport Note that we deem cilium and microtubule-based flagellum to be equivalent. GO:0035734 biological_process owl:Class GO:0010970 biolink:NamedThing transport along microtubule The movement of organelles or other particles from one location in the cell to another along microtubules, driven by motor activity. tmpzr1t_l9r_go_relaxed.owl movement along microtubule|microtubule-based transport|establishment of localization by movement along microtubule tb 2009-05-27T10:56:08Z biological_process owl:Class GO:0102622 biolink:NamedThing linuron hydrolase activity Catalysis of the reaction: linuron + H2O <=> N,O-dimethylhydroxylamine + carbon dioxide + 3,4-dichloroaniline. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15526 molecular_function owl:Class GO:1901896 biolink:NamedThing positive regulation of ATPase-coupled calcium transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of an ATPase-coupled calcium transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of Ca2+-pumping ATPase activity|up-regulation of Ca2+-pumping ATPase activity|upregulation of ATP phosphohydrolase (Ca2+-transporting)|activation of sarco(endo)plasmic reticulum Ca2+-ATPase|up-regulation of calcium-transporting ATPase activity|up regulation of calcium ABC transporter|positive regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|activation of calcium ABC transporter|activation of plasma membrane Ca-ATPase|up regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|upregulation of Ca2+-transporting ATPase activity|positive regulation of plasma membrane Ca-ATPase|activation of sarcoplasmic reticulum ATPase|up-regulation of calcium ABC transporter|activation of Ca2+-pumping ATPase activity|up-regulation of calcium transporting ATPase activity|activation of ATP phosphohydrolase (Ca2+-transporting)|up regulation of Ca2+-pumping ATPase activity|up regulation of calcium pump|positive regulation of calcium-translocating P-type ATPase activity|up regulation of Ca(2+)-transporting ATPase activity|up-regulation of Ca2+-transporting ATPase activity|positive regulation of Ca(2+)-transporting ATPase activity|upregulation of Ca(2+)-transporting ATPase activity|up regulation of calcium transporting ATPase activity|upregulation of calcium-translocating P-type ATPase activity|up regulation of calcium efflux ATPase|up-regulation of plasma membrane Ca-ATPase|activation of calcium-translocating P-type ATPase activity|up regulation of sarcoplasmic reticulum ATPase|positive regulation of calcium ABC transporter|activation of Ca(2+)-transporting ATPase activity|up-regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|up regulation of plasma membrane Ca-ATPase|upregulation of Ca2+-pumping ATPase activity|up regulation of calcium-translocating P-type ATPase activity|activation of calcium-transporting ATPase activity|upregulation of sarcoplasmic reticulum ATPase|activation of calcium pump|up-regulation of ATP phosphohydrolase (Ca2+-transporting)|positive regulation of calcium transporting ATPase activity|upregulation of calcium ABC transporter|positive regulation of calcium pump|activation of calcium transporting ATPase activity|positive regulation of calcium efflux ATPase|positive regulation of ATP phosphohydrolase (Ca2+-transporting)|positive regulation of sarcoplasmic reticulum ATPase|positive regulation of calcium-transporting ATPase activity|upregulation of calcium efflux ATPase|activation of calcium efflux ATPase|up-regulation of calcium pump|upregulation of calcium-transporting ATPase activity|up-regulation of calcium efflux ATPase|up-regulation of Ca(2+)-transporting ATPase activity|upregulation of calcium transporting ATPase activity|up regulation of calcium-transporting ATPase activity|up regulation of Ca2+-transporting ATPase activity|upregulation of calcium pump|upregulation of plasma membrane Ca-ATPase|up-regulation of calcium-translocating P-type ATPase activity|up regulation of ATP phosphohydrolase (Ca2+-transporting)|activation of Ca2+-transporting ATPase activity|positive regulation of Ca2+-transporting ATPase activity|upregulation of sarco(endo)plasmic reticulum Ca2+-ATPase|up-regulation of sarcoplasmic reticulum ATPase rl 2013-02-06T21:18:29Z biological_process owl:Class GO:1901021 biolink:NamedThing positive regulation of calcium ion transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion transmembrane transporter activity|upregulation of calcium ion transmembrane transporter activity|up regulation of calcium ion transmembrane transporter activity|activation of calcium ion transmembrane transporter activity rl 2012-06-15T07:54:40Z biological_process owl:Class GO:0015240 biolink:NamedThing amiloride transmembrane transporter activity Enables the transfer of amiloride from one side of a membrane to the other. Amiloride is a potent and specific inhibitor of sodium ion entry into cells. It is used as a potassium-sparing diuretic. tmpzr1t_l9r_go_relaxed.owl amiloride transporter activity molecular_function owl:Class GO:0043157 biolink:NamedThing response to cation stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001542 biolink:NamedThing ovulation from ovarian follicle The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct. An example of this is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030728 biolink:NamedThing ovulation The release of a mature ovum/oocyte from an ovary. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Ovulation biological_process owl:Class GO:1902371 biolink:NamedThing negative regulation of tRNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of tRNA breakdown|down-regulation of tRNA breakdown|downregulation of tRNA catabolic process|down regulation of tRNA breakdown|negative regulation of tRNA breakdown|down regulation of tRNA catabolic process|down-regulation of tRNA degradation|downregulation of tRNA breakdown|downregulation of tRNA catabolism|down-regulation of tRNA catabolic process|down regulation of tRNA catabolism|negative regulation of tRNA degradation|down regulation of tRNA degradation|inhibition of tRNA catabolic process|down-regulation of tRNA catabolism|negative regulation of tRNA catabolism|inhibition of tRNA degradation|inhibition of tRNA catabolism|downregulation of tRNA degradation bf 2013-08-22T15:08:20Z biological_process owl:Class GO:1902369 biolink:NamedThing negative regulation of RNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of RNA catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of RNA catabolic process|down regulation of RNA breakdown|down regulation of RNA catabolic process|inhibition of RNA catabolism|negative regulation of RNA degradation|negative regulation of RNA catabolism|down regulation of RNA catabolism|downregulation of RNA breakdown|down regulation of RNA degradation|down-regulation of RNA degradation|downregulation of RNA catabolism|down-regulation of RNA catabolism|inhibition of RNA degradation|inhibition of RNA breakdown|down-regulation of RNA breakdown|inhibition of RNA catabolic process|down-regulation of RNA catabolic process|downregulation of RNA degradation|negative regulation of RNA breakdown bf 2013-08-22T14:59:39Z biological_process owl:Class GO:0030139 biolink:NamedThing endocytic vesicle A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting. tmpzr1t_l9r_go_relaxed.owl endocytotic vesicle|endocytotic transport vesicle NIF_Subcellular:sao1362520468 cellular_component owl:Class GO:0046678 biolink:NamedThing response to bacteriocin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacteriocin stimulus. A bacteriocin is a protein substance released by certain bacteria that kills but does not lyse closely related strains of bacteria. Specific bacteriocins attach to specific receptors on cell walls and induce specific metabolic block, e.g. cessation of nucleic acid or protein synthesis of oxidative phosphorylation. tmpzr1t_l9r_go_relaxed.owl bacteriocin susceptibility/resistance biological_process owl:Class GO:0010930 biolink:NamedThing negative regulation of auxin mediated signaling pathway Any process that decreases the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin. tmpzr1t_l9r_go_relaxed.owl negative regulation of auxin mediated signalling pathway biological_process owl:Class GO:0044564 biolink:NamedThing envenomation resulting in occlusion of the pore of voltage-gated potassium channel in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant blocking of a voltage-gated potassium channel, inhibiting the pore's activity, in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-05T04:14:24Z biological_process owl:Class GO:0044562 biolink:NamedThing envenomation resulting in negative regulation of voltage-gated potassium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant negative regulation of the activity of a voltage-gated potassium channel in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-05T04:01:49Z biological_process owl:Class GO:1904715 biolink:NamedThing negative regulation of chaperone-mediated autophagy Any process that stops, prevents or reduces the frequency, rate or extent of chaperone-mediated autophagy. tmpzr1t_l9r_go_relaxed.owl inhibition of CMA|negative regulation of CMA|down-regulation of CMA|down regulation of CMA|down regulation of chaperone-mediated autophagy|inhibition of chaperone-mediated autophagy|down-regulation of chaperone-mediated autophagy|downregulation of CMA|downregulation of chaperone-mediated autophagy pad 2015-10-06T08:49:09Z biological_process owl:Class GO:0010507 biolink:NamedThing negative regulation of autophagy Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008333 biolink:NamedThing endosome to lysosome transport The directed movement of substances from endosomes to lysosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035920 biolink:NamedThing negative regulation of high voltage-gated calcium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a high voltage-gated calcium channel in another organism. A high voltage-gated channel is a channel whose open state is dependent on high voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl negative regulation of high voltage gated calcium channel activity in other organism|negative regulation of high voltage-dependent calcium channel activity in other organism|down-regulation of high voltage-gated calcium channel activity in other organism|inhibition of high voltage-gated calcium channel activity in other organism|downregulation of high voltage-gated calcium channel activity in other organism bf 2011-07-01T12:00:23Z biological_process owl:Class GO:0060041 biolink:NamedThing retina development in camera-type eye The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. tmpzr1t_l9r_go_relaxed.owl retina development in camera-style eye|retinal development GO:0002073 biological_process owl:Class GO:1905416 biolink:NamedThing regulation of amoeboid sperm motility Any process that modulates the frequency, rate or extent of amoeboid sperm motility. tmpzr1t_l9r_go_relaxed.owl regulation of ameboid sperm motility|regulation of ameboid sperm movement|regulation of amoeboid sperm movement pr 2016-09-01T11:28:48Z biological_process owl:Class GO:0098813 biolink:NamedThing nuclear chromosome segregation The process in which genetic material, in the form of nuclear chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. Nuclear chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007059 biolink:NamedThing chromosome segregation The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. tmpzr1t_l9r_go_relaxed.owl chromosome transmission|chromosome division Wikipedia:Chromosome_segregation biological_process owl:Class GO:0061703 biolink:NamedThing pyroptosome complex A protein complex that consists of an assemble of ASC dimers that is capable of inducing pyroptosis. tmpzr1t_l9r_go_relaxed.owl ASC pyroptosome dph 2015-05-08T14:43:37Z cellular_component owl:Class GO:0008499 biolink:NamedThing UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + N-acetylglucosamine = galactose-beta-1,3-N-acetylglucosamine + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity|beta3Gal-Ts activity|UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase activity|beta-1,3-GalTase activity Reactome:R-HSA-914010|Reactome:R-HSA-9603989 molecular_function owl:Class GO:1902554 biolink:NamedThing serine/threonine protein kinase complex A protein complex which is capable of protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl PDR16 complex dimer|PDR16 complex homodimer An example is IRE1 in S. cerevisiae (UniProt ID P32361) in PMID:18191223 (inferred from direct assay). bhm 2013-12-06T16:06:12Z cellular_component owl:Class GO:0006039 biolink:NamedThing cell wall chitin catabolic process The chemical reactions and pathways resulting in the breakdown of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall chitin breakdown|cell wall chitin catabolism|cell wall chitin degradation biological_process owl:Class GO:0006037 biolink:NamedThing cell wall chitin metabolic process The chemical reactions and pathways involving cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall chitin metabolism biological_process owl:Class GO:0043470 biolink:NamedThing regulation of carbohydrate catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060512 biolink:NamedThing prostate gland morphogenesis The process in which the anatomical structures of a prostate gland are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071580 biolink:NamedThing regulation of zinc ion transmembrane transport Any process that modulates the frequency, rate or extent of the directed movement of zinc ions (Zn2+) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl regulation of zinc ion membrane transport mah 2010-01-28T03:05:53Z biological_process owl:Class GO:1905817 biolink:NamedThing positive regulation of dorsal/ventral axon guidance Any process that activates or increases the frequency, rate or extent of dorsal/ventral axon guidance. tmpzr1t_l9r_go_relaxed.owl activation of dorsal/ventral axon pathfinding|up-regulation of dorsal/ventral axon guidance|upregulation of dorsoventral axon guidance|activation of dorsal/ventral axon guidance|upregulation of dorsal/ventral axon guidance|upregulation of dorsal-ventral axon guidance|upregulation of dorsal/ventral axon pathfinding|up-regulation of dorsal/ventral axon pathfinding|positive regulation of dorsal/ventral axon pathfinding|up regulation of dorsoventral axon guidance|up regulation of dorsal/ventral axon pathfinding|up regulation of dorsal-ventral axon guidance|up-regulation of dorsoventral axon guidance|up-regulation of dorsal-ventral axon guidance|activation of dorsal-ventral axon guidance|activation of dorsoventral axon guidance|positive regulation of dorsoventral axon guidance|up regulation of dorsal/ventral axon guidance|positive regulation of dorsal-ventral axon guidance hbye 2017-01-12T13:39:01Z biological_process owl:Class GO:0015847 biolink:NamedThing putrescine transport The directed movement of putrescine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Putrescine is 1,4-diaminobutane, the polyamine formed by decarboxylation of ornithine and the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015846 biolink:NamedThing polyamine transport The directed movement of polyamines, organic compounds containing two or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038149 biolink:NamedThing C-C motif chemokine 2 receptor activity Combining with the C-C motif chemokine 2 (CCL2) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CCL2 receptor activity bf 2012-05-11T11:37:16Z molecular_function owl:Class GO:0016493 biolink:NamedThing C-C chemokine receptor activity Combining with a C-C chemokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035934 biolink:NamedThing corticosterone secretion The regulated release of corticosterone into the circulatory system. Corticosterone is a 21-carbon steroid hormone of the corticosteroid type produced in the cortex of the adrenal glands. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:09:31Z biological_process owl:Class GO:2000343 biolink:NamedThing positive regulation of chemokine (C-X-C motif) ligand 2 production Any process that activates or increases the frequency, rate or extent of chemokine (C-X-C motif) ligand 2 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of CXCL2 production|positive regulation of MIP-2 production|positive regulation of SCYB2 production|positive regulation of MIP2 production|positive regulation of chemokine (C-C motif) ligand 2 secretion|positive regulation of CCL2 secretion mah 2011-02-01T11:57:20Z GO:1904209 biological_process owl:Class GO:2000341 biolink:NamedThing regulation of chemokine (C-X-C motif) ligand 2 production Any process that modulates the frequency, rate or extent of chemokine (C-X-C motif) ligand 2 production. tmpzr1t_l9r_go_relaxed.owl regulation of MIP2 production|regulation of SCYB2 production|regulation of CCL2 secretion|regulation of chemokine (C-C motif) ligand 2 secretion|regulation of MIP-2 production|chemokine (C-C motif) ligand 2 secretion|regulation of CXCL2 production mah 2011-02-01T11:57:14Z GO:0035926|GO:1904207 biological_process owl:Class GO:0036529 biolink:NamedThing protein deglycation, glyoxal removal The removal of glyoxal from a glycated protein, to form glycolate and a deglycated protein. tmpzr1t_l9r_go_relaxed.owl protein deglycation of glyoxal-glycated protein bf 2016-08-04T10:41:25Z biological_process owl:Class GO:1903189 biolink:NamedThing glyoxal metabolic process The chemical reactions and pathways involving glyoxal. tmpzr1t_l9r_go_relaxed.owl glyoxal metabolism bf 2014-07-15T10:11:45Z biological_process owl:Class GO:0006404 biolink:NamedThing RNA import into nucleus The import of RNA from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl RNA-nucleus import|RNA import into cell nucleus|RNA transport from cytoplasm to nucleus biological_process owl:Class GO:0050658 biolink:NamedThing RNA transport The directed movement of RNA, ribonucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009875 biolink:NamedThing pollen-pistil interaction The interaction between a pollen grain and pistil. tmpzr1t_l9r_go_relaxed.owl pollen-gynoecium interaction biological_process owl:Class GO:0048066 biolink:NamedThing developmental pigmentation The developmental process that results in the deposition of coloring matter in an organism, tissue or cell. tmpzr1t_l9r_go_relaxed.owl pigmentation during development biological_process owl:Class GO:0043473 biolink:NamedThing pigmentation The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000668 biolink:NamedThing regulation of dendritic cell apoptotic process Any process that modulates the frequency, rate or extent of dendritic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of dendritic cell apoptosis pr 2011-05-09T07:34:16Z biological_process owl:Class GO:0016807 biolink:NamedThing cysteine-type carboxypeptidase activity Catalysis of the hydrolysis of a single C-terminal amino acid residue from a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 MetaCyc:3.4.18.1-RXN|EC:3.4.18.- molecular_function owl:Class GO:0140194 biolink:NamedThing negative regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:13:02Z biological_process owl:Class GO:1902182 biolink:NamedThing shoot apical meristem development The process whose specific outcome is the progression of a shoot apical meristem over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl promeristem development|SAM development|primary shoot meristem development tb 2013-05-30T23:13:21Z biological_process owl:Class GO:0035025 biolink:NamedThing positive regulation of Rho protein signal transduction Any process that activates or increases the frequency, rate or extent of Rho protein signal transduction. tmpzr1t_l9r_go_relaxed.owl stimulation of Rho protein signal transduction|up regulation of Rho protein signal transduction|activation of Rho protein signal transduction|up-regulation of Rho protein signal transduction|upregulation of Rho protein signal transduction biological_process owl:Class GO:0050863 biolink:NamedThing regulation of T cell activation Any process that modulates the frequency, rate or extent of T cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of T-cell activation|regulation of T lymphocyte activation|regulation of T-lymphocyte activation biological_process owl:Class GO:0039527 biolink:NamedThing suppression by virus of host TRAF-mediated signal transduction Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of TRAF-mediated signal transduction in the host. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host tumor necrosis factor receptor-associated factor signaling|negative regulation by virus of host TRAF-mediated signal transduction|inhibition of host TRAF-mediated signal transduction by virus bf 2011-06-22T05:30:41Z biological_process owl:Class GO:0015347 biolink:NamedThing sodium-independent organic anion transmembrane transporter activity Enables the transfer of organic anions from one side of a membrane to the other, in a sodium independent manner. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9661799|Reactome:R-HSA-879594|Reactome:R-HSA-879562|Reactome:R-HSA-561059|Reactome:R-HSA-879584|Reactome:R-HSA-9661446|Reactome:R-HSA-9661397|Reactome:R-HSA-9661723 molecular_function owl:Class GO:0019708 biolink:NamedThing peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine The synthesis of peptidyl-glycine cholest-5-en-3-beta-ol ester at the carboxy-terminus of autolytically cleaved proteins. tmpzr1t_l9r_go_relaxed.owl peptidyl-glycine cholesteryl ester anabolism from peptidyl-glycine|peptidyl-glycine cholesteryl ester formation from peptidyl-glycine|peptidyl-glycine cholesteryl ester synthesis from peptidyl-glycine RESID:AA0309 biological_process owl:Class GO:0006501 biolink:NamedThing C-terminal protein lipidation The covalent attachment of a lipid group to the carboxy-terminus of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075031 biolink:NamedThing positive regulation of formation of symbiont germ tube hook structure for appressorium development Any process that activates, maintains or increases the frequency, rate or extent of symbiont germ tube hook structure formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont germ tube hook structure formation on or near host|positive regulation of formation of symbiont germ tube hook structure on or near host|positive regulation of germ tube tip of symbiont on or near the exterior of host biological_process owl:Class GO:1990529 biolink:NamedThing glycosylphosphatidylinositol-mannosyltransferase I complex A protein complex that is involved in the transfer of the four mannoses in the GPI-anchor precursor. In yeast S. cerevisiae this complex consists of Pbn1p and Gpi14p and in rat this complex consists of PIG-X and PIG-M. tmpzr1t_l9r_go_relaxed.owl GPI-MT-I complex rb 2014-11-06T01:02:31Z cellular_component owl:Class GO:1901642 biolink:NamedThing nucleoside transmembrane transport The directed movement of nucleoside across a membrane. tmpzr1t_l9r_go_relaxed.owl nucleoside membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. pr 2012-11-16T13:32:01Z biological_process owl:Class GO:0036280 biolink:NamedThing cellular response to L-canavanine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-canavanine stimulus. L-canavanine is L-homoserine substituted at oxygen with a guanidino (carbamimidamido) group. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-11T11:09:37Z biological_process owl:Class GO:1902923 biolink:NamedThing poly(3-hydroxyvalerate) biosynthetic process The chemical reactions and pathways resulting in the formation of poly(3-hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(3-hydroxyvalerate) anabolism|poly(3-hydroxyvalerate) formation|poly(3-hydroxyvalerate) synthesis|poly(3-hydroxyvalerate) biosynthesis tt 2014-04-21T19:14:02Z biological_process owl:Class GO:1902921 biolink:NamedThing poly(hydroxyvalerate) biosynthetic process The chemical reactions and pathways resulting in the formation of poly(hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(hydroxyvalerate) anabolism|poly(hydroxyvalerate) biosynthesis|poly(hydroxyvalerate) synthesis|poly(hydroxyvalerate) formation tt 2014-04-21T19:12:38Z biological_process owl:Class GO:0002679 biolink:NamedThing respiratory burst involved in defense response A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002252 biolink:NamedThing immune effector process Any process of the immune system that executes a component of an immune response. An effector immune process takes place after its activation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18737 biological_process owl:Class GO:1902222 biolink:NamedThing erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of erythrose 4-phosphate/phosphoenolpyruvate family amino acid. tmpzr1t_l9r_go_relaxed.owl erythrose 4-phosphate/phosphoenolpyruvate family amino acid breakdown|erythrose 4-phosphate/phosphoenolpyruvate family amino acid degradation|erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolism pr 2013-06-13T10:37:43Z biological_process owl:Class GO:0048169 biolink:NamedThing regulation of long-term neuronal synaptic plasticity A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers. tmpzr1t_l9r_go_relaxed.owl Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0048168 biolink:NamedThing regulation of neuronal synaptic plasticity A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers. tmpzr1t_l9r_go_relaxed.owl Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0015459 biolink:NamedThing potassium channel regulator activity Binds to and modulates the activity of a potassium channel. tmpzr1t_l9r_go_relaxed.owl potassium channel gating activity molecular_function owl:Class GO:0030923 biolink:NamedThing metal incorporation into metallo-oxygen cluster The formation of a cluster of several metal atoms, including manganese or calcium, with one or more bridging (mu-bond) oxygen atoms; amino acids residues in proteins that may ligate the metal oxygen cluster are histidine, aspartate, and glutamate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009224 biolink:NamedThing CMP biosynthetic process The chemical reactions and pathways resulting in the formation of CMP, cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP anabolism|CMP synthesis|CMP formation|CMP biosynthesis biological_process owl:Class GO:0046596 biolink:NamedThing regulation of viral entry into host cell Any process that modulates the frequency, rate or extent of the viral entry into the host cell. tmpzr1t_l9r_go_relaxed.owl viral escort protein|regulation of viral penetration into host cell biological_process owl:Class GO:1904967 biolink:NamedThing regulation of monopolar spindle attachment to meiosis I kinetochore Any process that modulates the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation. tmpzr1t_l9r_go_relaxed.owl regulation of monopolar attachment|regulation of attachment of spindle microtubules to kinetochore involved in meiosis I|regulation of sister kinetochore mono-orientation|regulation of attachment of spindle microtubules to kinetochore during meiosis I|repair of merotelic kinetochore attachment defect, meiosis I|regulation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|correction of merotelic kinetochore attachment, meiosis I https://github.com/geneontology/go-ontology/issues/18815 mah 2016-02-15T15:19:12Z GO:0090699 biological_process owl:Class GO:0008015 biolink:NamedThing blood circulation The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products. tmpzr1t_l9r_go_relaxed.owl hemolymph circulation GO:0070261 biological_process owl:Class GO:0048257 biolink:NamedThing 3'-flap endonuclease activity Catalysis of the cleavage of a 3' flap structure in DNA, but not other DNA structures; processes the 3' ends of Okazaki fragments in lagging strand DNA synthesis. tmpzr1t_l9r_go_relaxed.owl 3' flap endonuclease activity molecular_function owl:Class GO:0016889 biolink:NamedThing endodeoxyribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl endodeoxyribonuclease activity, producing other than 5'-phosphomonoesters EC:3.1.22.- molecular_function owl:Class GO:0061247 biolink:NamedThing mesonephric glomerular mesangium development The process whose specific outcome is the progression of the mesonephric glomerular mesangium over time, from its formation to the mature structure. The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T12:59:25Z biological_process owl:Class GO:0072109 biolink:NamedThing glomerular mesangium development The process whose specific outcome is the progression of the glomerular mesangium over time, from its formation to the mature structure. The glomerular mesangium is the thin membrane connective tissue composed of mesangial cells, which helps to support the capillary loops in a renal glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T10:35:24Z biological_process owl:Class GO:1904151 biolink:NamedThing positive regulation of microglial cell mediated cytotoxicity Any process that activates or increases the frequency, rate or extent of microglial cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl up-regulation of microglial cell mediated cytotoxicity|upregulation of microglial cell mediated cytotoxicity|activation of microglial cell mediated cytotoxicity|up regulation of microglial cell mediated cytotoxicity nc 2015-04-15T08:05:42Z biological_process owl:Class GO:0036421 biolink:NamedThing extrinsic component of external side of mycolate outer membrane The component of mycolate membrane consisting of gene products and protein complexes that are loosely bound to its external surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to external side of mycolate outer membrane|extrinsic to external side of MOM|extrinsic to external side of mycomembrane bf 2013-09-05T20:23:45Z cellular_component owl:Class GO:0031242 biolink:NamedThing extrinsic component of external side of cell outer membrane The component of a cell outer membrane consisting of gene products and protein complexes that are loosely bound to its external surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to external side of outer membrane|extrinsic to external side of cell outer membrane|extrinsic to external leaflet of cell outer membrane cellular_component owl:Class GO:0046323 biolink:NamedThing glucose import The directed movement of the hexose monosaccharide glucose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl glucose uptake Wikipedia:Glucose_uptake biological_process owl:Class GO:1904659 biolink:NamedThing glucose transmembrane transport The process in which glucose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl glucose transport vw 2015-09-04T17:20:16Z GO:0015758 biological_process owl:Class GO:1905206 biolink:NamedThing positive regulation of hydrogen peroxide-induced cell death Any process that activates or increases the frequency, rate or extent of cell death in response to hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl activation of cell death in response to hydrogen peroxide|positive regulation of cell death in response to hydrogen peroxide|activation of hydrogen peroxide-mediated cell death|positive regulation of hydrogen peroxide-mediated cell death|up regulation of hydrogen peroxide-mediated cell death|positive regulation of cell death in response to H2O2|upregulation of hydrogen peroxide-mediated cell death|up regulation of cell death in response to H2O2|up-regulation of cell death in response to hydrogen peroxide|upregulation of cell death in response to hydrogen peroxide|activation of cell death in response to H2O2|up-regulation of cell death in response to H2O2|upregulation of cell death in response to H2O2|up regulation of cell death in response to hydrogen peroxide|up-regulation of hydrogen peroxide-mediated cell death bc 2016-05-20T13:13:39Z biological_process owl:Class GO:1900629 biolink:NamedThing methanophenazine metabolic process The chemical reactions and pathways involving methanophenazine. tmpzr1t_l9r_go_relaxed.owl methanophenazine metabolism tt 2012-05-21T06:12:07Z biological_process owl:Class GO:0000102 biolink:NamedThing L-methionine secondary active transmembrane transporter activity Enables the transfer of L-methionine from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl L-methionine porter activity molecular_function owl:Class GO:0050607 biolink:NamedThing mycothiol-dependent formaldehyde dehydrogenase activity Catalysis of the reaction: formaldehyde + mycothiol + NAD+ = S-formylmycothiol + NADH + H+. tmpzr1t_l9r_go_relaxed.owl formaldehyde:NAD+ oxidoreductase (mycothiol-formylating)|NAD/factor-dependent formaldehyde dehydrogenase activity MetaCyc:1.2.1.66-RXN|EC:1.1.1.306|RHEA:28502 molecular_function owl:Class GO:0030237 biolink:NamedThing female sex determination The specification of female sex of an individual organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007530 biolink:NamedThing sex determination Any process that establishes and transmits the specification of sexual status of an individual organism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sex-determination_system biological_process owl:Class GO:0042443 biolink:NamedThing phenylethylamine metabolic process The chemical reactions and pathways involving phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds. tmpzr1t_l9r_go_relaxed.owl phenylethylamine metabolism biological_process owl:Class GO:0001725 biolink:NamedThing stress fiber A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber. tmpzr1t_l9r_go_relaxed.owl stress fibre|actin cable cellular_component owl:Class GO:0050305 biolink:NamedThing strombine dehydrogenase activity Catalysis of the reaction: N-(carboxymethyl)-D-alanine + H(2)O + NAD(+) = glycine + H(+) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl N-(carboxymethyl)-D-alanine: NAD+ oxidoreductase activity|N-(carboxymethyl)-D-alanine:NAD+ oxidoreductase (glycine-forming)|strombine[N-(carboxymethyl)-D-alanine]dehydrogenase activity KEGG_REACTION:R00368|RHEA:14061|MetaCyc:STROMBINE-DEHYDROGENASE-RXN|EC:1.5.1.22 molecular_function owl:Class GO:0015842 biolink:NamedThing aminergic neurotransmitter loading into synaptic vesicle The active transport of aminergic neurotransmitters into a synaptic vesicle. This import is fuelled by an electrochemical gradient across the vesicle membrane, established by the action proton pumps. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098700 biolink:NamedThing neurotransmitter loading into synaptic vesicle The active transport of neurotransmitters into a synaptic vesicle. This import is fuelled by an electrochemical gradient across the vesicle membrane, established by the action of proton pumps. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle neurotransmitter loading|neurotransmitter uptake into synaptic vesicle|neurotransmitter import into synaptic vesicle biological_process owl:Class GO:0097007 biolink:NamedThing 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity Catalysis of the reaction: (EE)-geranyllinalool + NADPH + O2 = 4,8,12-trimethyl-1,3,7,11-tridecatetraene + NADP+ + 2 H2O. It is unknown whether this reaction proceeds by the direct release of the 4-carbon compound but-1-en-3-one, or whether the substrate is first degraded to C18-farnesylacetone and then cleaved to produce 4,8,12-trimethyl-1,3,7,11-tridecatetraene (TMTT) and acetone. tmpzr1t_l9r_go_relaxed.owl 4,8,12-trimethyl-1,3,7,11-tridecatetraene synthase activity|TMTT synthase activity RHEA:13545|MetaCyc:RXN-8620 pr 2011-03-16T04:37:20Z molecular_function owl:Class GO:0031102 biolink:NamedThing neuron projection regeneration The regrowth of neuronal processes such as axons or dendrites in response to their loss or damage. tmpzr1t_l9r_go_relaxed.owl neurite regeneration biological_process owl:Class GO:0032675 biolink:NamedThing regulation of interleukin-6 production Any process that modulates the frequency, rate, or extent of interleukin-6 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-6 biosynthetic process|regulation of IL-6 production GO:0045408 biological_process owl:Class GO:0047252 biolink:NamedThing beta-mannosylphosphodecaprenol-mannooligosaccharide 6-mannosyltransferase activity Catalysis of the reaction: (1->6)-alpha-D-mannosyloligosaccharide + beta-D-mannosylphosphodecaprenol = (1->6)-alpha-D-mannosyl-(1->6)-alpha-D-mannosyl-oligosaccharide + decaprenol phosphate. tmpzr1t_l9r_go_relaxed.owl mannosylphospholipid-methylmannoside alpha-1,6-mannosyltransferase activity|beta-D-mannosylphosphodecaprenol:1,6-alpha-D-mannosyloligosaccharide 1,6-alpha-D-mannosyltransferase activity EC:2.4.1.199|MetaCyc:2.4.1.199-RXN molecular_function owl:Class GO:0120062 biolink:NamedThing positive regulation of gastric emptying Any process that increases the frequency, rate or extent of any gastric emptying process, the process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T21:55:08Z biological_process owl:Class GO:0090092 biolink:NamedThing regulation of transmembrane receptor protein serine/threonine kinase signaling pathway Any process that modulates the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl regulation of transmembrane receptor protein serine/threonine kinase signalling pathway tb 2009-11-04T11:46:40Z biological_process owl:Class GO:0018679 biolink:NamedThing dibenzothiophene-5,5-dioxide monooxygenase activity Catalysis of the reaction: dibenzothiophene-5,5-dioxide + O2 + 2 NADH + H+ = 2 NAD+ + H2O + 2'-hydroxybiphenyl-2-sulfinate. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.-|UM-BBD_reactionID:r0235|MetaCyc:RXN-623 molecular_function owl:Class GO:0044861 biolink:NamedThing protein transport into plasma membrane raft The directed movement of a protein into a plasma membrane raft. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:26:29Z biological_process owl:Class GO:0044860 biolink:NamedThing protein localization to plasma membrane raft A process in which a protein is transported to, or maintained in, a location within a plasma membrane raft. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:25:01Z biological_process owl:Class GO:0140420 biolink:NamedThing heme import into cell The directed movement of a heme from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis. tmpzr1t_l9r_go_relaxed.owl heme assimilation https://github.com/geneontology/go-ontology/issues/18671 pg 2020-01-30T13:10:07Z biological_process owl:Class GO:0015886 biolink:NamedThing heme transport The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl haem transport biological_process owl:Class GO:0071972 biolink:NamedThing peptidoglycan L,D-transpeptidase activity Catalysis of the reaction: 2 a peptidoglycan dimer (tetrapeptide) + 3 H2O = a peptidoglycan tetramer with L,D cross-links (L-Lys-D-Asn-L-Lys) + di-trans,poly-cis-undecaprenyl diphosphate + 4 D-alanine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11349 mah 2010-10-18T04:36:19Z molecular_function owl:Class GO:0080121 biolink:NamedThing AMP transport The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl adenosine monophosphate transport dhl 2009-04-28T04:01:37Z biological_process owl:Class GO:0097740 biolink:NamedThing paraflagellar rod A large lattice-like axial structure found in some flagellated protists which extends alongside the axoneme. Protein components of the paraflagellar rod are likely implicated, among other, in adenine nucleotide signalling and metabolism, and in calcium signalling. tmpzr1t_l9r_go_relaxed.owl PFR pr 2016-10-19T11:30:08Z cellular_component owl:Class GO:0045732 biolink:NamedThing positive regulation of protein catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. tmpzr1t_l9r_go_relaxed.owl up regulation of protein catabolic process|up-regulation of protein catabolic process|positive regulation of protein degradation|positive regulation of protein breakdown|activation of protein catabolic process|stimulation of protein catabolic process|upregulation of protein catabolic process|positive regulation of protein catabolism biological_process owl:Class GO:0010326 biolink:NamedThing methionine-oxo-acid transaminase activity Catalysis of the reaction: methionine + a 2-oxo acid = 2-oxo-4-methylthiobutanoate + an amino acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2201 molecular_function owl:Class GO:0002307 biolink:NamedThing CD8-positive, alpha-beta regulatory T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta regulatory T cell. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta regulatory T cell development|CD8-positive, alpha-beta regulatory T-lymphocyte differentiation|CD8-positive, alpha-beta regulatory T lymphocyte differentiation|CD8-positive, alpha-beta regulatory T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0043374 biolink:NamedThing CD8-positive, alpha-beta T cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a mature CD8-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta T lymphocyte differentiation|CD8-positive, alpha-beta T-cell differentiation|CD8-positive, alpha-beta T cell development|CD8-positive, alpha-beta T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0031113 biolink:NamedThing regulation of microtubule polymerization Any process that modulates the frequency, rate or extent of microtubule polymerization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032271 biolink:NamedThing regulation of protein polymerization Any process that modulates the frequency, rate or extent of the process of creating protein polymers. tmpzr1t_l9r_go_relaxed.owl regulation of protein polymerisation biological_process owl:Class GO:0033467 biolink:NamedThing CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process The chemical reactions and pathways involving CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP-ketodeoxyoctanoate metabolic process|CMP-keto-3-deoxy-D-manno-octulosonic acid metabolism|CMP-KDO metabolic process biological_process owl:Class GO:0045472 biolink:NamedThing response to ether Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ether stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016316 biolink:NamedThing phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase activity|inositol polyphosphate 4-phosphatase type II activity Reactome:R-HSA-1676162|EC:3.1.3.66|MetaCyc:3.1.3.66-RXN|Reactome:R-HSA-1676164 GO:0004440 molecular_function owl:Class GO:1903170 biolink:NamedThing negative regulation of calcium ion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl down regulation of calcium ion transmembrane transport|down-regulation of calcium ion transmembrane transport|down-regulation of transmembrane calcium transport|downregulation of calcium ion membrane transport|inhibition of calcium ion transmembrane transport|negative regulation of transmembrane calcium transport|inhibition of transmembrane calcium transport|down-regulation of calcium ion membrane transport|negative regulation of calcium ion membrane transport|inhibition of calcium ion membrane transport|down regulation of calcium ion membrane transport|downregulation of calcium ion transmembrane transport|downregulation of transmembrane calcium transport|down regulation of transmembrane calcium transport human HRC regulates RYR2 and thus regulates transmembrane transport of calcium from SR to cytosol rl 2014-07-11T17:09:32Z biological_process owl:Class GO:1902140 biolink:NamedThing response to inositol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inositol stimulus. tmpzr1t_l9r_go_relaxed.owl al 2013-05-21T13:42:10Z biological_process owl:Class GO:2000609 biolink:NamedThing regulation of thyroid hormone generation Any process that modulates the frequency, rate or extent of thyroid hormone generation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T10:12:14Z biological_process owl:Class GO:1902176 biolink:NamedThing negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of intrinsic apoptotic signaling pathway in response to oxidative stress|inhibition of intrinsic apoptotic signaling pathway in response to oxidative stress|negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress|downregulation of intrinsic apoptotic signaling pathway in response to oxidative stress|down-regulation of intrinsic apoptotic signaling pathway in response to oxidative stress pr 2013-05-29T18:30:05Z biological_process owl:Class GO:2001243 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of intrinsic apoptotic signalling pathway|negative regulation of mitochondrial-mediated apoptotic pathway|negative regulation of intrinsic apoptotic pathway|negative regulation of intrinsic apoptosis pr 2011-11-24T01:36:03Z biological_process owl:Class GO:1902137 biolink:NamedThing (-)-secoisolariciresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-secoisolariciresinol catabolism|(-)-secoisolariciresinol degradation|(-)-secoisolariciresinol breakdown ms 2013-05-21T08:50:24Z biological_process owl:Class GO:0006895 biolink:NamedThing Golgi to endosome transport The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes. tmpzr1t_l9r_go_relaxed.owl Golgi to endosome vesicle-mediated transport|trans-Golgi to endosome transport|TGN to endosome transport GO:0048218 biological_process owl:Class GO:0006892 biolink:NamedThing post-Golgi vesicle-mediated transport The directed movement of substances from the Golgi to other parts of the cell, including organelles and the plasma membrane, mediated by small transport vesicles. tmpzr1t_l9r_go_relaxed.owl post-Golgi transport biological_process owl:Class GO:0033423 biolink:NamedThing CCA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CCA codon. tmpzr1t_l9r_go_relaxed.owl proline tRNA Note that in the standard genetic code, CCA codes for proline. molecular_function owl:Class GO:0120048 biolink:NamedThing U6 snRNA (adenine-(43)-N(6))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + adenine(43) in U6 snRNA = S-adenosyl-L-homocysteine + N(6)-methyladenine(43) in U6 snRNA. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-02T20:37:40Z molecular_function owl:Class GO:1905546 biolink:NamedThing cellular response to phenylpropanoid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylpropanoid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-10-11T19:54:58Z biological_process owl:Class GO:0002630 biolink:NamedThing positive regulation of proteolysis associated with antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of proteolysis associated with antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl upregulation of proteolysis associated with antigen processing and presentation|up regulation of proteolysis associated with antigen processing and presentation|up-regulation of proteolysis associated with antigen processing and presentation|stimulation of proteolysis associated with antigen processing and presentation|activation of proteolysis associated with antigen processing and presentation biological_process owl:Class GO:0002585 biolink:NamedThing positive regulation of antigen processing and presentation of peptide antigen Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of peptide antigen. tmpzr1t_l9r_go_relaxed.owl upregulation of antigen processing and presentation of peptide antigen|up-regulation of antigen processing and presentation of peptide antigen|positive regulation of peptide antigen processing and presentation|stimulation of antigen processing and presentation of peptide antigen|up regulation of antigen processing and presentation of peptide antigen|activation of antigen processing and presentation of peptide antigen biological_process owl:Class GO:1903974 biolink:NamedThing positive regulation of cellular response to macrophage colony-stimulating factor stimulus Any process that activates or increases the frequency, rate or extent of cellular response to macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular response to M-CSF stimulus|positive regulation of cellular response to macrophage colony-stimulating factor|upregulation of cellular response to M-CSF stimulus|upregulation of cellular response to macrophage colony-stimulating factor|upregulation of cellular response to macrophage colony-stimulating factor stimulus|up-regulation of cellular response to M-CSF stimulus|activation of cellular response to macrophage colony-stimulating factor|up-regulation of cellular response to macrophage colony-stimulating factor|activation of cellular response to macrophage colony-stimulating factor stimulus|up regulation of cellular response to macrophage colony-stimulating factor stimulus|up-regulation of cellular response to macrophage colony-stimulating factor stimulus|positive regulation of cellular response to M-CSF stimulus|up regulation of cellular response to macrophage colony-stimulating factor|activation of cellular response to M-CSF stimulus nc 2015-03-02T14:50:25Z biological_process owl:Class GO:2000314 biolink:NamedThing negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation vk 2011-01-18T10:26:56Z biological_process owl:Class GO:0060186 biolink:NamedThing outer ear emergence The growth of the outer ear. tmpzr1t_l9r_go_relaxed.owl outer ear growth|ear extroversion|ear elevation biological_process owl:Class GO:1904556 biolink:NamedThing L-tryptophan transmembrane transport The directed movement of L-tryptophan across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2015-08-14T14:21:13Z biological_process owl:Class GO:0019966 biolink:NamedThing interleukin-1 binding Binding to interleukin-1. tmpzr1t_l9r_go_relaxed.owl IL-1 binding molecular_function owl:Class GO:2000109 biolink:NamedThing regulation of macrophage apoptotic process Any process that modulates the frequency, rate or extent of macrophage apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of activation-induced cell death|regulation of macrophage apoptosis|regulation of AICD mah 2010-09-15T01:44:15Z biological_process owl:Class GO:0035936 biolink:NamedThing testosterone secretion The regulated release of testosterone into the circulatory system. Testosterone is an androgen having 17beta-hydroxy and 3-oxo groups, together with unsaturation at C-4-C-5. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:13:13Z biological_process owl:Class GO:0035714 biolink:NamedThing cellular response to nitrogen dioxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen dioxide (NO2) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to NO2 bf 2011-03-02T03:16:37Z biological_process owl:Class GO:0043296 biolink:NamedThing apical junction complex A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in some invertebrates, such as Drosophila, is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability. tmpzr1t_l9r_go_relaxed.owl apical cell junction complex|apical junction cellular_component owl:Class GO:1901838 biolink:NamedThing positive regulation of transcription of nucleolar large rRNA by RNA polymerase I Any process that activates or increases the frequency, rate or extent of transcription of nuclear large rRNA mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl activation of transcription of nuclear rRNA large Pol I transcript|activation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|positive regulation of transcription of nuclear rRNA large Pol I transcript|up-regulation of transcription of nuclear rRNA large Pol I transcript|upregulation of transcription of nuclear rRNA large Pol I transcript|up regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|upregulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|up-regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|up regulation of transcription of nuclear rRNA large Pol I transcript|positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter sart 2013-01-23T10:16:36Z biological_process owl:Class GO:1901836 biolink:NamedThing regulation of transcription of nucleolar large rRNA by RNA polymerase I Any process that modulates the frequency, rate or extent of transcription of nuclear large rRNA mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|regulation of transcription of nuclear rRNA large Pol I transcript sart 2013-01-23T10:16:27Z biological_process owl:Class GO:1900367 biolink:NamedThing positive regulation of defense response to insect Any process that activates or increases the frequency, rate or extent of defense response to insect. tmpzr1t_l9r_go_relaxed.owl up regulation of defense response to insect|upregulation of physiological defense response to insect|up-regulation of physiological defense response to insect|activation of defense response to insect|activation of physiological defense response to insect|positive regulation of physiological defense response to insect|up regulation of physiological defense response to insect|up-regulation of defense response to insect|upregulation of defense response to insect dhl 2012-04-12T04:44:10Z biological_process owl:Class GO:1900133 biolink:NamedThing regulation of renin secretion into blood stream Any process that modulates the frequency, rate or extent of renin secretion into blood stream. tmpzr1t_l9r_go_relaxed.owl regulation of renin release into blood stream rph 2012-02-27T10:32:01Z biological_process owl:Class GO:0097041 biolink:NamedThing phenolic phthiocerol biosynthetic process The chemical reactions and pathways resulting in the formation of phenolic phthiocerol, a phthiocerol derivative having a 4-hydroxyphenyl substituent at the 29-position. tmpzr1t_l9r_go_relaxed.owl phenolic phthiocerol biosynthesis|phenolic phthiocerol formation|phenolic phthiocerol anabolism|phenolphthiocerol biosynthesis|phenolic phthiocerol synthesis pr 2011-04-15T01:25:59Z biological_process owl:Class GO:0052921 biolink:NamedThing acetone-cyanohydrin acetone-lyase (cyanide-forming) activity Catalysis of the reaction: acetone cyanohydrin = hydrogen cyanide + acetone. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R01553|RHEA:11932|EC:4.1.2.46|MetaCyc:ACETONE-CYANHYDRIN-LYASE-RXN molecular_function owl:Class GO:0052919 biolink:NamedThing aliphatic (R)-hydroxynitrile lyase activity Catalysis of the reaction: an aliphatic (R)-hydroxynitrile = an aliphatic aldehyde or ketone + hydrogen cyanide. tmpzr1t_l9r_go_relaxed.owl (R)-HNL activity|(R)-hydroxynitrile lyase activity|(R)-oxynitrilase activity EC:4.1.2.46 molecular_function owl:Class GO:1905934 biolink:NamedThing negative regulation of cell fate determination Any process that stops, prevents or reduces the frequency, rate or extent of cell fate determination. tmpzr1t_l9r_go_relaxed.owl down-regulation of cell fate determination|downregulation of cell fate determination|inhibition of cell fate determination|down regulation of cell fate determination bhm 2017-02-09T11:25:30Z biological_process owl:Class GO:0051491 biolink:NamedThing positive regulation of filopodium assembly Any process that activates or increases the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone. tmpzr1t_l9r_go_relaxed.owl upregulation of filopodium formation|positive regulation of filopodia biosynthesis|up regulation of filopodium formation|positive regulation of filopodia formation|stimulation of filopodium formation|positive regulation of filopodium formation|up-regulation of filopodium formation|activation of filopodium formation biological_process owl:Class GO:0048217 biolink:NamedThing pectic matrix The gel-like pectin matrix consists of the interlinked acidic and neutral pectin networks that are further cross-linked by calcium bridges. Pectins consist largely of long chains of mostly galacturonic acid units (typically 1,4 linkages and sometimes methyl esters). Three major pectic polysaccharides (homogalacturonan, rhamnogalacturonan I and rhamnogalacturonan II) are thought to occur in all primary cell walls. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046447 biolink:NamedThing terpenoid indole alkaloid metabolic process The chemical reactions and pathways involving terpenoid indole alkaloids, compounds formed from the condensation of tryptamine (derived from tryptophan) and secologanin (derived from geranyl pyrophosphate). tmpzr1t_l9r_go_relaxed.owl terpenoid indole alkaloid metabolism biological_process owl:Class GO:0003938 biolink:NamedThing IMP dehydrogenase activity Catalysis of the reaction: inosine 5'-phosphate + NAD+ + H2O = xanthosine 5'-phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl inosine 5'-monophosphate dehydrogenase activity|IMP:NAD+ oxidoreductase activity|inosine monophosphate oxidoreductase activity|inosinate dehydrogenase activity|inosine monophosphate dehydrogenase activity|IMP oxidoreductase activity|inosinic acid dehydrogenase activity|inosine-5'-phosphate dehydrogenase activity MetaCyc:IMP-DEHYDROG-RXN|RHEA:11708|EC:1.1.1.205|Reactome:R-HSA-73794 molecular_function owl:Class GO:0106253 biolink:NamedThing positive regulation of DNA strand resection involved in replication fork processing Any process that activates or increases the frequency, rate or extent of DNA strand resection involved in replication fork processing. tmpzr1t_l9r_go_relaxed.owl hjd 2020-02-24T15:31:30Z biological_process owl:Class GO:0110026 biolink:NamedThing regulation of DNA strand resection involved in replication fork processing Any process that modulates the frequency, rate or extent of DNA strand resection involved in replication fork processing. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-05T18:21:06Z biological_process owl:Class GO:0072388 biolink:NamedThing flavin adenine dinucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl flavin adenine dinucleotide formation|flavin adenine dinucleotide biosynthesis|FAD or FADH2 biosynthetic process|flavin adenine dinucleotide anabolism|flavin adenine dinucleotide synthesis mah 2010-12-02T04:26:34Z biological_process owl:Class GO:1904877 biolink:NamedThing positive regulation of DNA ligase activity Any process that activates or increases the frequency, rate or extent of DNA ligase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of DNA ligase activity|up-regulation of DNA ligase activity|upregulation of DNA ligase activity|activation of DNA ligase activity rl 2015-12-18T18:35:44Z biological_process owl:Class GO:1904875 biolink:NamedThing regulation of DNA ligase activity Any process that modulates the frequency, rate or extent of DNA ligase activity. tmpzr1t_l9r_go_relaxed.owl rl 2015-12-18T18:35:30Z biological_process owl:Class GO:0097752 biolink:NamedThing regulation of DNA stability Any process that modulates the stability of DNA. tmpzr1t_l9r_go_relaxed.owl pr 2017-01-24T11:23:01Z biological_process owl:Class GO:0010711 biolink:NamedThing negative regulation of collagen catabolic process Any process that decreases the rate, frequency or extent of collagen catabolism. Collagen catabolism is the proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl down regulation of collagen catabolic process|negative regulation of collagen breakdown|inhibition of collagen catabolic process|downregulation of collagen catabolic process|negative regulation of collagen degradation|down-regulation of collagen catabolic process|negative regulation of collagen catabolism biological_process owl:Class GO:0033093 biolink:NamedThing Weibel-Palade body A large, elongated, rod-shaped secretory granule characteristic of vascular endothelial cells that contain a number of structurally and functionally distinct proteins, of which the best characterized are von Willebrand factor (VWF) and P-selectin. Weibel-Palade bodies are formed from the trans-Golgi network in a process that depends on VWF, which is densely packed in a highly organized manner, and on coat proteins that remain associated with the granules. Upon cell stimulation, regulated exocytosis releases the contained proteins to the cell surface, where they act in the recruitment of platelets and leukocytes and in inflammatory and vasoactive responses. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Weibel-Palade_body cellular_component owl:Class GO:0030136 biolink:NamedThing clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao148845161 cellular_component owl:Class GO:0045106 biolink:NamedThing intermediate filament depolymerization Disassembly of intermediate filaments by the removal of component monomers from a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051261 biolink:NamedThing protein depolymerization The process in which protein polymers, compounds composed of a large number of component monomers, are broken down. Depolymerization occurs by the successive removal of monomers from an existing poly- or oligomeric protein. tmpzr1t_l9r_go_relaxed.owl protein polymer catabolic process|protein polymer degradation|protein polymer catabolism|protein polymer breakdown biological_process owl:Class GO:1903748 biolink:NamedThing negative regulation of establishment of protein localization to mitochondrion Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization to mitochondrion. tmpzr1t_l9r_go_relaxed.owl down-regulation of establishment of protein localisation to mitochondrion|inhibition of establishment of protein localization in mitochondrion|down regulation of establishment of protein localization in mitochondrion|downregulation of establishment of protein localization in mitochondrion|inhibition of establishment of protein localisation to mitochondrion|down regulation of establishment of protein localisation to mitochondrion|inhibition of establishment of protein localization to mitochondrion|downregulation of establishment of protein localization to mitochondrion|down regulation of establishment of protein localization to mitochondrion|negative regulation of establishment of protein localisation to mitochondrion|down-regulation of establishment of protein localization to mitochondrion|downregulation of establishment of protein localisation to mitochondrion|down-regulation of establishment of protein localization in mitochondrion|negative regulation of establishment of protein localization in mitochondrion krc 2014-12-12T22:18:18Z biological_process owl:Class GO:0005171 biolink:NamedThing hepatocyte growth factor receptor binding Binding to an hepatocyte growth factor receptor. tmpzr1t_l9r_go_relaxed.owl hepatocyte growth factor|hepatocyte growth factor receptor ligand|HGF receptor binding molecular_function owl:Class GO:0032490 biolink:NamedThing detection of molecule of bacterial origin The series of events in which a stimulus from a molecule of bacterial origin is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of bacterium associated molecule|detection of bacteria associated molecule|detection of bacterial associated molecule biological_process owl:Class GO:0048871 biolink:NamedThing multicellular organismal homeostasis Any process involved in the maintenance of an internal steady state at the level of the multicellular organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019356 biolink:NamedThing nicotinate nucleotide biosynthetic process from tryptophan The chemical reactions and pathways resulting in the formation of nicotinate nucleotide from other compounds, including tryptophan. tmpzr1t_l9r_go_relaxed.owl nicotinate nucleotide anabolism from tryptophan|nicotinate nucleotide formation from tryptophan|nicotinate nucleotide synthesis from tryptophan biological_process owl:Class GO:0019357 biolink:NamedThing nicotinate nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinate (pyridine 3-carboxylic acid). tmpzr1t_l9r_go_relaxed.owl nicotinate nucleotide synthesis|nicotinate nucleotide anabolism|nicotinate nucleotide formation|nicotinate nucleotide biosynthesis biological_process owl:Class GO:0050166 biolink:NamedThing pantoate 4-dehydrogenase activity Catalysis of the reaction: (R)-pantoate + NAD(+) = (R)-4-dehydropantoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (R)-pantoate:NAD+ 4-oxidoreductase activity|pantoate dehydrogenase activity|panthothenase activity|D-pantoate:NAD+ 4-oxidoreductase activity RHEA:23000|MetaCyc:PANTOATE-4-DEHYDROGENASE-RXN|EC:1.1.1.106|KEGG_REACTION:R02471 molecular_function owl:Class GO:2000704 biolink:NamedThing positive regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of fibroblast growth factor receptor signalling pathway of ureteric bud formation|positive regulation of fibroblast growth factor receptor signaling pathway of ureteric bud formation|positive regulation of FGF receptor signalling pathway of ureteric bud formation|positive regulation of FGF receptor signaling pathway of ureteric bud formation|positive regulation of FGFR signaling pathway of ureteric bud formation yaf 2011-05-25T09:48:27Z biological_process owl:Class GO:0045743 biolink:NamedThing positive regulation of fibroblast growth factor receptor signaling pathway Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of FGF receptor signalling pathway|up regulation of fibroblast growth factor receptor signaling pathway|upregulation of fibroblast growth factor receptor signaling pathway|activation of fibroblast growth factor receptor signaling pathway|positive regulation of FGF receptor signaling pathway|positive regulation of FGFR signaling pathway|stimulation of fibroblast growth factor receptor signaling pathway|up-regulation of fibroblast growth factor receptor signaling pathway biological_process owl:Class GO:0051463 biolink:NamedThing negative regulation of cortisol secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of cortisol from a cell. tmpzr1t_l9r_go_relaxed.owl downregulation of cortisol secretion|down regulation of cortisol secretion|down-regulation of cortisol secretion|inhibition of cortisol secretion biological_process owl:Class GO:0098520 biolink:NamedThing excitatory neuromuscular junction The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a post-synaptic potential responsible for muscle contraction. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-14T12:02:51Z cellular_component owl:Class GO:1900120 biolink:NamedThing regulation of receptor binding Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. tmpzr1t_l9r_go_relaxed.owl regulation of receptor ligand bf 2012-02-22T11:40:53Z biological_process owl:Class GO:0043012 biolink:NamedThing regulation of fusion of sperm to egg plasma membrane Any process that modulates the binding and fusion of a sperm to the oocyte plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of sperm-oocyte fusion biological_process owl:Class GO:0021724 biolink:NamedThing inferior raphe nucleus development The process whose specific outcome is the progression of the inferior raphe nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl inferior central nucleus development|posterior raphe nucleus development biological_process owl:Class GO:0048857 biolink:NamedThing neural nucleus development The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000005 biolink:NamedThing negative regulation of metanephric S-shaped body morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of metanephric S-shaped body morphogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-30T02:14:37Z biological_process owl:Class GO:0061962 biolink:NamedThing negative regulation of heme oxygenase activity Any process that stops, prevents, or reduces the frequency or rate of heme oxygenase activity. tmpzr1t_l9r_go_relaxed.owl dph 2018-01-22T20:37:03Z biological_process owl:Class GO:1901611 biolink:NamedThing phosphatidylglycerol binding Binding to phosphatidylglycerol. tmpzr1t_l9r_go_relaxed.owl kmv 2012-11-12T21:18:24Z molecular_function owl:Class GO:1902651 biolink:NamedThing positive regulation of histone H2A-H2B dimer displacement Any process that activates or increases the frequency, rate or extent of histone H2A-H2B dimer displacement. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone H2A-H2B dimer displacement|activation of histone H2A-H2B dimer displacement|up regulation of histone H2A-H2B dimer displacement|upregulation of histone H2A-H2B dimer displacement di 2014-01-21T18:19:23Z biological_process owl:Class GO:0052005 biolink:NamedThing suppression by symbiont of host ethylene-mediated defense response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the ethylene-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host ethylene-mediated defense response|down-regulation by symbiont of host ethylene-mediated defense response|suppression by organism of host ethylene-mediated defense response|negative regulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism involved in symbiotic interaction|inhibition by symbiont of host ethylene-mediated defense response|negative regulation by symbiont of host ethylene-mediated defense response|downregulation by symbiont of host ethylene-mediated defense response|negative regulation by organism of ethylene-mediated defense response of other organism involved in symbiotic interaction|negative regulation by symbiont of defense-related host ethylene-mediated signal transduction pathway GO:0052268|GO:0052070|GO:0052254 biological_process owl:Class GO:0060232 biolink:NamedThing delamination The process of negative regulation of cell adhesion that results in a cell or sheet of cells splitting off from an existing epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035563 biolink:NamedThing positive regulation of chromatin binding Any process that increases the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-19T10:29:41Z biological_process owl:Class GO:1901950 biolink:NamedThing dense core granule transport The directed movement a dense core granule within a cell. tmpzr1t_l9r_go_relaxed.owl dense core vesicle transport goslim_synapse pr 2013-02-19T13:00:52Z biological_process owl:Class GO:2000230 biolink:NamedThing negative regulation of pancreatic stellate cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of pancreatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-09T03:45:21Z biological_process owl:Class GO:0043684 biolink:NamedThing type IV secretion system complex A complex of proteins related to those involved in bacterial DNA conjugative transfer, that permits the transfer of DNA or proteins into the extracellular milieu or directly into host cells. In general the type IV complex forms a multisubunit cell-envelope-spanning structure composed of a secretion channel and often a pilus or other surface filament or protein(s). tmpzr1t_l9r_go_relaxed.owl type IV protein secretion system complex|T4SS complex cellular_component owl:Class GO:0072161 biolink:NamedThing mesenchymal cell differentiation involved in kidney development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:31:49Z biological_process owl:Class GO:0005497 biolink:NamedThing androgen binding Binding to an androgen, a male sex hormone. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047506 biolink:NamedThing (deoxy)adenylate kinase activity Catalysis of the reaction: ATP + dAMP = ADP + dADP. tmpzr1t_l9r_go_relaxed.owl ATP:(d)AMP phosphotransferase activity MetaCyc:DEOXYADENYLATE-KINASE-RXN|EC:2.7.4.11|RHEA:23100 molecular_function owl:Class GO:0004649 biolink:NamedThing poly(ADP-ribose) glycohydrolase activity Catalysis of the hydrolysis of poly(ADP-ribose) at glycosidic (1''-2') linkage of ribose-ribose bond to produce free ADP-ribose. tmpzr1t_l9r_go_relaxed.owl RHEA:52216|Reactome:R-HSA-8952903|MetaCyc:3.2.1.143-RXN|Reactome:R-HSA-5651828|EC:3.2.1.143 molecular_function owl:Class GO:0099178 biolink:NamedThing regulation of retrograde trans-synaptic signaling by endocanabinoid Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by an endocannabinoid. tmpzr1t_l9r_go_relaxed.owl regulation of endocannabinoid-mediated retrograde trans-synaptic signaling biological_process owl:Class GO:1900240 biolink:NamedThing negative regulation of phenotypic switching Any process that stops, prevents or reduces the frequency, rate or extent of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl negative regulation of phenotypic dimorphism|down regulation of phenotypic dimorphism|downregulation of phenotypic dimorphism|downregulation of phenotypic switching|down regulation of phenotypic switching|down-regulation of phenotypic dimorphism|down-regulation of phenotypic switching|inhibition of phenotypic dimorphism|inhibition of phenotypic switching di 2012-03-28T01:49:26Z biological_process owl:Class GO:1900239 biolink:NamedThing regulation of phenotypic switching Any process that modulates the frequency, rate or extent of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl regulation of phenotypic dimorphism di 2012-03-28T01:49:16Z biological_process owl:Class GO:0048817 biolink:NamedThing negative regulation of hair follicle maturation Any process that stops, prevents, or reduces the frequency, rate or extent of hair follicle maturation. tmpzr1t_l9r_go_relaxed.owl down regulation of hair follicle maturation|inhibition of hair follicle maturation|downregulation of hair follicle maturation|down-regulation of hair follicle maturation biological_process owl:Class GO:0036119 biolink:NamedThing response to platelet-derived growth factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet-derived growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to PDGF stimulus|response to platelet-derived growth factor stimulus bf 2012-02-20T02:48:00Z biological_process owl:Class GO:0044278 biolink:NamedThing cell wall disruption in other organism A process carried out by an organism that results in the breakdown of the cell wall of a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2010-01-14T02:01:48Z biological_process owl:Class GO:0018119 biolink:NamedThing peptidyl-cysteine S-nitrosylation The covalent addition of a nitric oxide (NO) group to the sulphur (S) atom of a cysteine residue in a protein, to form peptidyl-S-nitrosyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl protein S-nitrosylation|S-nitrosylation RESID:AA0230 biological_process owl:Class GO:0010941 biolink:NamedThing regulation of cell death Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071421 biolink:NamedThing manganese ion transmembrane transport A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl manganese ion membrane transport|transmembrane manganese transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-12-15T02:41:31Z biological_process owl:Class GO:0006828 biolink:NamedThing manganese ion transport The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080029 biolink:NamedThing cellular response to boron-containing substance levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of boron-containing substances. tmpzr1t_l9r_go_relaxed.owl cellular response to boron levels biological_process owl:Class GO:0046627 biolink:NamedThing negative regulation of insulin receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of insulin receptor signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of insulin receptor signalling pathway|down regulation of insulin receptor signaling pathway|inhibition of insulin receptor signaling pathway|down-regulation of insulin receptor signaling pathway|downregulation of insulin receptor signaling pathway biological_process owl:Class GO:2000645 biolink:NamedThing negative regulation of receptor catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of receptor catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of receptor catabolism|negative regulation of receptor degradation|negative regulation of receptor breakdown vk 2011-04-21T11:20:22Z biological_process owl:Class GO:0032037 biolink:NamedThing myosin I heavy chain binding Binding to a heavy chain of a myosin I complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0017024 biolink:NamedThing myosin I binding Binding to a class I myosin; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047985 biolink:NamedThing hydrogen dehydrogenase activity Catalysis of the reaction: H2 + NAD+ = H+ + NADH. tmpzr1t_l9r_go_relaxed.owl H(2):NAD(+) oxidoreductase activity|NAD-linked hydrogenase activity|hydrogenase activity|H2:NAD+ oxidoreductase activity|bidirectional hydrogenase activity|hydrogen:NAD+ oxidoreductase activity EC:1.12.1.2|RHEA:24636|MetaCyc:HYDROGEN-DEHYDROGENASE-RXN molecular_function owl:Class GO:0002581 biolink:NamedThing negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of antigen (peptide or polysaccharide) via MHC class II. tmpzr1t_l9r_go_relaxed.owl down-regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|down regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|inhibition of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of peptide or polysaccharide antigen processing and presentation via MHC class II|downregulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II biological_process owl:Class GO:1901980 biolink:NamedThing positive regulation of inward rectifier potassium channel activity Any process that activates or increases the frequency, rate or extent of inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl up regulation of inward rectifier potassium channel activity|up-regulation of Kir channel activity|upregulation of Kir channel activity|up regulation of Kir channel activity|up-regulation of inward rectifier potassium channel activity|activation of inward rectifier potassium channel activity|upregulation of inward rectifier potassium channel activity|activation of Kir channel activity|positive regulation of Kir channel activity tb 2013-03-12T18:21:17Z biological_process owl:Class GO:0051222 biolink:NamedThing positive regulation of protein transport Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl activation of protein transport|stimulation of protein transport|up-regulation of protein transport|up regulation of protein transport|upregulation of protein transport biological_process owl:Class GO:0072385 biolink:NamedThing minus-end-directed organelle transport along microtubule The directed movement of an organelle towards the minus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an organelle to a microtubule, and ends when the organelle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule minus-end-directed organelle distribution|microtubule minus-end-directed organelle localization mah 2010-12-01T05:01:20Z biological_process owl:Class GO:0072384 biolink:NamedThing organelle transport along microtubule The directed movement of an organelle along a microtubule, mediated by motor proteins. This process begins with the attachment of an organelle to a microtubule, and ends when the organelle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule-based organelle localization mah 2010-12-01T04:59:11Z biological_process owl:Class GO:0016090 biolink:NamedThing prenol metabolic process The chemical reactions and pathways involving prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail. tmpzr1t_l9r_go_relaxed.owl prenol metabolism biological_process owl:Class GO:0036395 biolink:NamedThing pancreatic amylase secretion The controlled release of amylase from a cell of the pancreas. tmpzr1t_l9r_go_relaxed.owl bf 2013-07-01T13:42:34Z biological_process owl:Class GO:0036394 biolink:NamedThing amylase secretion The controlled release of amylase from a cell. tmpzr1t_l9r_go_relaxed.owl amylase release bf 2013-07-01T13:03:19Z biological_process owl:Class GO:0034415 biolink:NamedThing tRNA 3'-trailer cleavage, exonucleolytic Exonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA. tmpzr1t_l9r_go_relaxed.owl tRNA 3'-end cleavage, exonucleolytic|exonucleolytic tRNA 3'-end cleavage|exonucleolytic tRNA 3'-trailer cleavage biological_process owl:Class GO:0090503 biolink:NamedThing RNA phosphodiester bond hydrolysis, exonucleolytic The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T12:05:27Z biological_process owl:Class GO:0018525 biolink:NamedThing 4-hydroxybenzoyl-CoA reductase activity Catalysis of the reaction: benzoyl-CoA + oxidized ferredoxin + H2O = 4-hydroxybenzoyl-CoA + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoyl-coA:(acceptor) oxidoreductase activity|4-hydroxybenzoyl-coA reductase (dehydroxylating) activity KEGG_REACTION:R05316|UM-BBD_reactionID:r0158|MetaCyc:OHBENZCOARED-RXN|RHEA:29603|EC:1.1.7.1 molecular_function owl:Class GO:0071840 biolink:NamedThing cellular component organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component. tmpzr1t_l9r_go_relaxed.owl cellular component organisation or biogenesis at cellular level|cellular component organisation or biogenesis|cellular component organization or biogenesis at cellular level mah 2010-09-10T01:39:16Z GO:0071841 biological_process owl:Class GO:0052875 biolink:NamedThing riboflavin reductase (NADH) activity Catalysis of the reaction: reduced riboflavin + NAD+ = riboflavin + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H:riboflavin oxidoreductase activity|NAD(P)H-dependent FMN reductase activity|flavin mononucleotide reductase activity|riboflavine mononucleotide reductase activity|flavine mononucleotide reductase activity|NAD(P)H2:FMN oxidoreductase activity|riboflavin mononucleotide reductase activity|NAD(P)H-FMN reductase activity|NAD(P)H:FMN oxidoreductase activity|NAD(P)H2 dehydrogenase (FMN) activity|riboflavin mononucleotide (reduced nicotinamide adenine dinucleotide) reductase activity MetaCyc:RXN-12445|EC:1.5.1.41|RHEA:31455|KEGG_REACTION:R09750 molecular_function owl:Class GO:0004313 biolink:NamedThing [acyl-carrier-protein] S-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + [acyl-carrier protein] = CoA + acetyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl ACP S-acetyltransferase activity|acetyl-CoA:acyl-carrier-protein S-acetyltransferase activity|acyl-carrier-protein S-acetyltransferase activity|ACPacetyltransferase activity|[acyl-carrier protein] S-acetyltransferase activity|ACP acetyltransferase activity|ACAT activity|acyl-carrier-proteinacetyltransferase activity|acyl-carrier-protein acetyltransferase activity|acetyl coenzyme A-acyl-carrier-protein transacylase activity MetaCyc:ACP-S-ACETYLTRANSFER-RXN|RHEA:41788|EC:2.3.1.38 molecular_function owl:Class GO:0048016 biolink:NamedThing inositol phosphate-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via an inositol phosphate. Includes production of the inositol phosphate, and downstream effectors that further transmit the signal within the cell. Inositol phosphates are a group of mono- to poly-phosphorylated inositols, and include inositol monophosphate (IP), inositol trisphosphate (IP3), inositol pentakisphosphate (IP5) and inositol hexaphosphate (IP6). tmpzr1t_l9r_go_relaxed.owl inositol phosphate-mediated signalling biological_process owl:Class GO:0019932 biolink:NamedThing second-messenger-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell. tmpzr1t_l9r_go_relaxed.owl second messenger-mediated signaling|second messenger-mediated signalling|second-messenger-mediated signal transduction|second messenger mediated signaling|second-messenger-mediated signalling|second messenger mediated signalling biological_process owl:Class GO:1900136 biolink:NamedThing regulation of chemokine activity Any process that modulates the frequency, rate or extent of chemokine activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-02-28T01:36:29Z biological_process owl:Class GO:1902564 biolink:NamedThing negative regulation of neutrophil activation Any process that stops, prevents or reduces the frequency, rate or extent of neutrophil activation. tmpzr1t_l9r_go_relaxed.owl downregulation of neutrophil activation|inhibition of neutrophil activation|down-regulation of neutrophil activation|down regulation of neutrophil activation ecu 2013-12-10T15:33:16Z biological_process owl:Class GO:0051206 biolink:NamedThing silicate metabolic process The chemical reactions and pathways involving silicates, the salts of silicic acids. Silicates are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates. tmpzr1t_l9r_go_relaxed.owl silicate metabolism biological_process owl:Class GO:0043436 biolink:NamedThing oxoacid metabolic process The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). tmpzr1t_l9r_go_relaxed.owl oxo acid metabolism|keto acid metabolic process|ketoacid metabolic process|keto acid metabolism|oxo acid metabolic process|oxoacid metabolism|ketoacid metabolism biological_process owl:Class GO:0102647 biolink:NamedThing D-ribose 5-phosphate:D-sedoheptulose 7-phosphate transaldolase activity Catalysis of the reaction: sedoheptulose 7-phosphate + D-ribose 5-phosphate <=> D-glycero-D-altro-octulose 8-phosphate + D-erythrose 4-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15789 molecular_function owl:Class GO:0019931 biolink:NamedThing protein-chromophore linkage via peptidyl-N6-3-dehydroretinal-L-lysine The modification of peptidyl-lysine to form N6-3,4-didehydroretinylidene-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0312 biological_process owl:Class GO:0062148 biolink:NamedThing L-gamma-glutamyl-L-propargylglycine hydroxylase activity Catalysis of the reaction: 2-oxoglutarate + L-gamma-glutamyl-L-propargylglycine + O2 = CO2 + L-gamma-glutamyl-(3R)-L-beta-ethynylserine + succinate. tmpzr1t_l9r_go_relaxed.owl RHEA:59900 dph 2019-09-02T17:04:43Z molecular_function owl:Class GO:1904403 biolink:NamedThing cellular response to nocodazole Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nocodazole stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T21:10:52Z biological_process owl:Class GO:0044277 biolink:NamedThing cell wall disassembly A process that results in the breakdown of the cell wall. tmpzr1t_l9r_go_relaxed.owl cellular cell wall disassembly jl 2010-01-14T02:00:34Z GO:0060871 biological_process owl:Class GO:0090688 biolink:NamedThing cleavage furrow rim The part of the cleavage furrow closest to the cell surface. tmpzr1t_l9r_go_relaxed.owl tb 2016-07-26T16:00:10Z cellular_component owl:Class GO:0070099 biolink:NamedThing regulation of chemokine-mediated signaling pathway Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of chemokine-mediated signalling pathway biological_process owl:Class GO:1900976 biolink:NamedThing positive regulation of tatiopterin biosynthetic process Any process that activates or increases the frequency, rate or extent of tatiopterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of tatiopterin anabolism|positive regulation of tatiopterin synthesis|upregulation of tatiopterin biosynthesis|up regulation of tatiopterin anabolism|upregulation of tatiopterin synthesis|activation of tatiopterin synthesis|up-regulation of tatiopterin synthesis|up-regulation of tatiopterin biosynthetic process|up regulation of tatiopterin formation|upregulation of tatiopterin formation|up-regulation of tatiopterin biosynthesis|activation of tatiopterin biosynthesis|positive regulation of tatiopterin formation|up regulation of tatiopterin biosynthesis|activation of tatiopterin biosynthetic process|upregulation of tatiopterin biosynthetic process|up regulation of tatiopterin biosynthetic process|upregulation of tatiopterin anabolism|up-regulation of tatiopterin formation|up-regulation of tatiopterin anabolism|positive regulation of tatiopterin anabolism|positive regulation of tatiopterin biosynthesis|activation of tatiopterin formation|up regulation of tatiopterin synthesis tt 2012-06-14T04:02:14Z biological_process owl:Class GO:0033597 biolink:NamedThing mitotic checkpoint complex A multiprotein complex that functions as a mitotic checkpoint inhibitor of the anaphase-promoting complex/cyclosome (APC/C). In budding yeast this complex consists of Mad2p, Mad3p, Bub3p and Cdc20p, and in mammalian cells it consists of MAD2, BUBR1, BUB3, and CDC20. tmpzr1t_l9r_go_relaxed.owl MCC cellular_component owl:Class GO:0034890 biolink:NamedThing endosulfan diol hydrolyase (cyclizing) activity Catalysis of the reaction: endosulfan diol = endosulfan ether + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1386 molecular_function owl:Class GO:0006225 biolink:NamedThing UDP biosynthetic process The chemical reactions and pathways resulting in the formation of UDP, uridine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP synthesis|UDP biosynthesis|UDP anabolism|UDP formation biological_process owl:Class GO:0004564 biolink:NamedThing beta-fructofuranosidase activity Catalysis of the reaction: a fructofuranosylated fructofuranosyl acceptor + H2O = a non fructofuranosylated fructofuranosyl acceptor + a beta-D-fructofuranoside. tmpzr1t_l9r_go_relaxed.owl invertase activity|maxinvert L 1000 activity|invertin activity|saccharase activity|alkaline invertase activity|fructosylinvertase activity|acid invertase activity|beta-h-fructosidase activity|glucosucrase activity|beta-fructosidase activity|beta-D-fructofuranoside fructohydrolase activity MetaCyc:RXN-9985|EC:3.2.1.26 molecular_function owl:Class GO:0034148 biolink:NamedThing negative regulation of toll-like receptor 5 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 5 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR5 signaling pathway|negative regulation of toll-like receptor 5 signalling pathway biological_process owl:Class GO:0034147 biolink:NamedThing regulation of toll-like receptor 5 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 5 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 5 signalling pathway|regulation of TLR5 signaling pathway biological_process owl:Class GO:0097098 biolink:NamedThing DNA/RNA hybrid annealing activity An activity that facilitates the base-pairing of single-stranded RNA to double-stranded DNA resulting in the formation of R-loops. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/2161 pr 2011-07-07T11:20:44Z molecular_function owl:Class GO:1900743 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to pH Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to pH. tmpzr1t_l9r_go_relaxed.owl upregulation of filamentous growth of a population of unicellular organisms in response to pH|activation of filamentous growth of a population of unicellular organisms in response to pH|up-regulation of filamentous growth of a population of unicellular organisms in response to pH|up regulation of filamentous growth of a population of unicellular organisms in response to pH di 2012-05-28T02:35:11Z biological_process owl:Class GO:1900430 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms. tmpzr1t_l9r_go_relaxed.owl activation of filamentous growth of a population of unicellular organisms|up regulation of filamentous growth of a population of unicellular organisms|upregulation of filamentous growth of a population of unicellular organisms|up-regulation of filamentous growth of a population of unicellular organisms di 2012-04-25T05:53:52Z biological_process owl:Class GO:0002361 biolink:NamedThing CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD4-positive, CD25-positive, alpha-beta regulatory T cell. tmpzr1t_l9r_go_relaxed.owl CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation|CD4-positive, CD25-positive, alpha-beta regulatory T cell development|CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation|CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0043367 biolink:NamedThing CD4-positive, alpha-beta T cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a mature CD4-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl CD4-positive, alpha-beta T-lymphocyte differentiation|CD4-positive, alpha beta T cell development|CD4-positive, alpha-beta T-cell differentiation|CD4-positive, alpha beta T cell differentiation|CD4-positive, alpha-beta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:2000709 biolink:NamedThing regulation of maintenance of meiotic sister chromatid cohesion, centromeric Any process that modulates the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of sister chromatin cohesion at centromere at meiosis I|regulation of maintenance of centromeric meiotic sister chromatin cohesion|regulation of maintenance of meiotic sister chromatin cohesion at centromere mah 2011-06-01T12:41:11Z biological_process owl:Class GO:0070602 biolink:NamedThing regulation of centromeric sister chromatid cohesion Any process that modulates the frequency, rate or extent of sister chromatid cohesion in the centromeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of sister chromatid cohesion at centromere mah 2009-04-28T04:32:53Z biological_process owl:Class GO:0009022 biolink:NamedThing tRNA nucleotidyltransferase activity Catalysis of the reaction: tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl RNase PH activity|tRNA:phosphate nucleotidyltransferase activity|ribonuclease PH activity|phosphate-dependent exonuclease activity EC:2.7.7.56|MetaCyc:TRNA-NUCLEOTIDYLTRANSFERASE-RXN|RHEA:10628 Note that, although the enzyme to which this term refers is also known as 'ribonuclease PH', and degrades tRNA in the 3'-5' direction in vivo, the term does not have parentage in the 'nuclease activity' branch of the ontology because both GO and the Enzyme Commission define nuclease activity as a type of hydrolysis. molecular_function owl:Class GO:0007060 biolink:NamedThing male meiosis chromosome segregation The cell cycle process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during the meiotic cell cycle in a male. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001158 biolink:NamedThing positive regulation of proline catabolic process to glutamate Any process that activates or increases the frequency, rate or extent of proline catabolic process to glutamate. tmpzr1t_l9r_go_relaxed.owl positive regulation of proline degradation to glutamate|positive regulation of proline breakdown to glutamate|positive regulation of proline oxidation mcc 2011-10-25T08:54:50Z biological_process owl:Class GO:0033243 biolink:NamedThing positive regulation of cellular amine catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines. tmpzr1t_l9r_go_relaxed.owl positive regulation of amine breakdown|positive regulation of amine degradation|positive regulation of amine catabolism biological_process owl:Class GO:2000848 biolink:NamedThing positive regulation of corticosteroid hormone secretion Any process that activates or increases the frequency, rate or extent of corticosteroid hormone secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of corticosteroid secretion bf 2011-07-26T08:43:45Z biological_process owl:Class GO:0032990 biolink:NamedThing cell part morphogenesis The process in which the anatomical structures of a cell part are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032989 biolink:NamedThing cellular component morphogenesis The process in which cellular structures, including whole cells or cell parts, are generated and organized. tmpzr1t_l9r_go_relaxed.owl cellular structure morphogenesis biological_process owl:Class GO:0007093 biolink:NamedThing mitotic cell cycle checkpoint signaling A signaling process that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in mitotic cell cycle checkpoint|mitotic checkpoint|signal transduction involved in mitotic G2/M transition checkpoint|signal transduction involved in mitotic cell cycle G1/S checkpoint|mitotic cell cycle checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072474|GO:0072456|GO:0031575|GO:0071780|GO:0072413 biological_process owl:Class GO:0019590 biolink:NamedThing L-arabitol catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of L-arabitol to form xylulose 5-phosphate. L-arabitol is converted into L-xylulose, which is then phosphorylated to L-xylulose-5-phosphate. This is converted to D-xylulose-5-phosphate via the intermediate L-ribulose-5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-arabitol degradation to xylulose 5-phosphate|L-arabitol utilization|L-arabitol and xylitol degradation|L-arabitol breakdown to xylulose 5-phosphate MetaCyc:LARABITOLUTIL-PWY biological_process owl:Class GO:1905595 biolink:NamedThing regulation of low-density lipoprotein particle receptor binding Any process that modulates the frequency, rate or extent of low-density lipoprotein particle receptor binding. tmpzr1t_l9r_go_relaxed.owl regulation of low-density lipoprotein receptor binding|regulation of LDL receptor binding nc 2016-10-26T10:57:23Z biological_process owl:Class GO:0047029 biolink:NamedThing (R)-4-hydroxyphenyllactate dehydrogenase (NADPH) activity Catalysis of the reaction: NADP+ + (R)-3-(4-hydroxyphenyl)lactate = NADPH + H+ + 3-(4-hydroxyphenyl)pyruvate. tmpzr1t_l9r_go_relaxed.owl hydroxyphenylpyruvate reductase activity|aromatic 2-oxoacid reductase activity|phenylpyruvate reductase activity https://github.com/geneontology/go-ontology/issues/21412|RHEA:52692|MetaCyc:RXN-7632 molecular_function owl:Class GO:0035818 biolink:NamedThing positive regulation of urine volume by pressure natriuresis An increase in the amount of urine excreted over a unit of time, as a result of pressure natriuresis. tmpzr1t_l9r_go_relaxed.owl diuresis resulting from pressure natriuresis bf 2011-04-20T01:55:42Z biological_process owl:Class GO:0035810 biolink:NamedThing positive regulation of urine volume Any process that increases the amount of urine excreted from the body over a unit of time. tmpzr1t_l9r_go_relaxed.owl elevation of urinary volume|diuresis|increase in urine flow bf 2011-04-20T01:19:38Z biological_process owl:Class GO:0106041 biolink:NamedThing positive regulation of GABA-A receptor activity Any process that activates or increases the frequency, rate or extent of GABA-A receptor activity. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-27T18:51:30Z biological_process owl:Class GO:0106040 biolink:NamedThing regulation of GABA-A receptor activity Any process that modulates the frequency, rate or extent of GABA-A receptor activity. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-27T18:47:02Z biological_process owl:Class GO:0060004 biolink:NamedThing reflex An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Reflex biological_process owl:Class GO:0042825 biolink:NamedThing TAP complex A heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). Functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl transporter associated with antigen presentation cellular_component owl:Class GO:0010524 biolink:NamedThing positive regulation of calcium ion transport into cytosol Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009372 biolink:NamedThing quorum sensing The cell-cell signaling process in which single-celled organisms carry out coordinated responses by monitoring their own population density, and often also that of other microbes, by producing small, diffusible, signal molecules, detecting the concentration of these molecules, and triggering a signal transduction pathway when a certain threshold is reached. Quorum sensing can occur amongst microbial communities in the environment or within host organisms. tmpzr1t_l9r_go_relaxed.owl quorum sensing system|detection of cell density by secreted molecule|cell-cell signaling involved in quorum sensing Wikipedia:Quorum_sensing GO:0060247|GO:0010699 biological_process owl:Class GO:0060245 biolink:NamedThing detection of cell density The series of events in which information about the density of cells in a population is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903897 biolink:NamedThing regulation of PERK-mediated unfolded protein response Any process that modulates the frequency, rate or extent of the PERK-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl regulation of endoplasmic reticulum unfolded protein response; PERK signaling|regulation of UPR signaling by PERK stress sensor|regulation of PERK branch of UPR|regulation of PERK signaling in response to endoplasmic reticulum stress|regulation of PERK signal transduction pathway|regulation of PKR-like ER kinase signal transduction|regulation of EIF2AK3-mediated unfolded protein response bf 2015-02-09T10:18:14Z biological_process owl:Class GO:0009373 biolink:NamedThing regulation of transcription by pheromones Any process involving pheromones that modulates the frequency, rate or extent of transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903569 biolink:NamedThing positive regulation of protein localization to ciliary membrane Any process that activates or increases the frequency, rate or extent of protein localization to ciliary membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of protein localisation in ciliary membrane|positive regulation of protein localisation in ciliary membrane|up regulation of protein localization to ciliary membrane|activation of protein localization in ciliary membrane|positive regulation of protein localisation to ciliary membrane|up regulation of protein localisation to ciliary membrane|up regulation of protein localization in ciliary membrane|upregulation of protein localisation to ciliary membrane|up-regulation of protein localisation to ciliary membrane|up-regulation of protein localisation in ciliary membrane|up-regulation of protein localization to ciliary membrane|up regulation of protein localisation in ciliary membrane|upregulation of protein localization in ciliary membrane|activation of protein localisation in ciliary membrane|activation of protein localization to ciliary membrane|positive regulation of protein localization in ciliary membrane|upregulation of protein localization to ciliary membrane|up-regulation of protein localization in ciliary membrane|activation of protein localisation to ciliary membrane krc 2014-10-24T21:33:08Z biological_process owl:Class GO:1904377 biolink:NamedThing positive regulation of protein localization to cell periphery Any process that activates or increases the frequency, rate or extent of protein localization to cell periphery. tmpzr1t_l9r_go_relaxed.owl activation of protein localization to cell periphery|up-regulation of protein localization to cell periphery|upregulation of protein localization to cell periphery|up regulation of protein localization to cell periphery sl 2015-06-22T22:09:37Z biological_process owl:Class GO:0002546 biolink:NamedThing negative regulation of tissue kallikrein-kinin cascade Any process that stops, prevents, or reduces the frequency, rate, or extent of the tissue kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl down-regulation of tissue kallikrein-kinin cascade|inhibition of tissue kallikrein-kinin cascade|downregulation of tissue kallikrein-kinin cascade|negative regulation of glandular kallikrein-kinin cascade|down regulation of tissue kallikrein-kinin cascade biological_process owl:Class GO:0002382 biolink:NamedThing regulation of tissue kallikrein-kinin cascade Any process that modulates the frequency, rate, or extent of the tissue kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl regulation of glandular kallikrein-kinin cascade biological_process owl:Class GO:0015965 biolink:NamedThing diadenosine tetraphosphate metabolic process The chemical reactions and pathways involving diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine tetraphosphate metabolism biological_process owl:Class GO:0015959 biolink:NamedThing diadenosine polyphosphate metabolic process The chemical reactions and pathways involving diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine polyphosphate metabolism biological_process owl:Class GO:0098728 biolink:NamedThing germline stem cell asymmetric division The self-renewing division of a germline stem cell, to produce a daughter stem cell and a daughter germ cell which will divide to form one or more gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140032 biolink:NamedThing glycosylation-dependent protein binding Binding to a protein upon glycosylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require glycosylation of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of glycosylation. It may be that the glycosylation causes a conformational change that allows binding of the protein to another region; this type of glycosylation-dependent protein binding is valid for annotation to this term. pg 2017-05-17T15:20:50Z molecular_function owl:Class GO:0038146 biolink:NamedThing chemokine (C-X-C motif) ligand 12 signaling pathway A series of molecular signals initiated by the binding of the chemokine CXCL12 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CXCL12 signaling pathway|stromal cell-derived factor-1 signaling pathway|CXCL12-activated CXCR7 signaling pathway|SDF1 signaling pathway bf 2012-05-11T11:26:17Z biological_process owl:Class GO:1902098 biolink:NamedThing calcitriol binding Binding to calcitriol. Calcitriol (1,25-dihydroxycholecalciferol) is the hormonally active form of vitamin D3. tmpzr1t_l9r_go_relaxed.owl 1,25-dihydroxyvitamin D3 binding|hormonally active vitamin D3 binding|1alpha,25-dihydroxyvitamin D3 binding|1alpha,25-dihydroxycholecalciferol binding|1alpha,25(OH)2D3 binding|1alpha,25(OH)2 vitamin D3 binding|1,25-dihydroxycholecalciferol binding bf 2013-05-02T09:41:15Z molecular_function owl:Class GO:1902271 biolink:NamedThing D3 vitamins binding Binding to D3 vitamins. tmpzr1t_l9r_go_relaxed.owl bf 2013-07-01T12:54:37Z molecular_function owl:Class GO:0110078 biolink:NamedThing TTT complex A protein complex responsible for the stabilisation of protein levels of the phosphatidylinositol 3-kinase-related protein kinase (PIKK) family proteins. The TTT complex can also be found as part of the ASTRA complex (GO:0070209). tmpzr1t_l9r_go_relaxed.owl Triple T complex|TELO2-TTI1-TTI2|Tel2-Tti1-Tti2 kmv 2018-01-29T21:39:52Z cellular_component owl:Class GO:0002423 biolink:NamedThing natural killer cell mediated immune response to tumor cell An immune response mediated by a natural killer cell triggered in response to the presence of a tumor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002418 biolink:NamedThing immune response to tumor cell An immune system process that functions in the response of an organism to a tumor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048713 biolink:NamedThing regulation of oligodendrocyte differentiation Any process that modulates the frequency, rate or extent of oligodendrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070902 biolink:NamedThing mitochondrial tRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in a mitochondrial tRNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-02T04:09:48Z biological_process owl:Class GO:0140233 biolink:NamedThing intracellular cAMP-activated cation channel activity involved in regulation of postsynaptic membrane potential Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts, to regulate the postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl intracellular cAMP activated cation channel activity involved in regulation of postsynaptic membrane potential https://github.com/geneontology/synapse/issues/231 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-09T11:31:18Z molecular_function owl:Class GO:0071251 biolink:NamedThing cellular response to silicon dioxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silicon dioxide stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to silica|cellular response to silox mah 2009-12-03T03:09:41Z biological_process owl:Class GO:0072292 biolink:NamedThing epithelial cell migration involved in metanephric proximal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to metanephric proximal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:54:28Z biological_process owl:Class GO:0050234 biolink:NamedThing pyrazolylalanine synthase activity Catalysis of the reaction: L-serine + pyrazole = 3-(pyrazol-1-yl)-L-alanine + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-serine hydro-lyase [adding pyrazole; 3-(pyrazol-1-yl)-L-alanine-forming]|beta-pyrazolylalaninase activity|L-serine hydro-lyase (adding pyrazole) KEGG_REACTION:R02378|MetaCyc:PYRAZOLYLALANINE-SYNTHASE-RXN|EC:4.2.1.50|RHEA:24512 molecular_function owl:Class GO:0003337 biolink:NamedThing mesenchymal to epithelial transition involved in metanephros morphogenesis A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric mesenchyme to epithelial transition dph 2009-11-24T09:29:49Z biological_process owl:Class GO:0070510 biolink:NamedThing regulation of histone H4-K20 methylation Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 20 of histone H4. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031060 biolink:NamedThing regulation of histone methylation Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015127 biolink:NamedThing bilirubin transmembrane transporter activity Enables the transfer of bilirubin from one side of a membrane to the other. Bilirubin is a linear tetrapyrrole produced in the reticuloendothelial system from biliverdin and transported to the liver as a complex with serum albumin. In the liver, bilirubin is converted to bilirubin bisglucuronide, which is excreted in the bile. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9661417|Reactome:R-HSA-5679031|Reactome:R-HSA-5679041 molecular_function owl:Class GO:0021805 biolink:NamedThing cell movement involved in somal translocation The movement of a cell body from the ventricular zone to the pial surface with a concomitant shortening of the process that extends to the pial surface. tmpzr1t_l9r_go_relaxed.owl cell motility involved in somal translocation biological_process owl:Class GO:0008275 biolink:NamedThing gamma-tubulin small complex A complex usually comprising two gamma-tubulin molecules and two conserved non-tubulin proteins. Some gamma-tubulin small complexes are thought to be the repeating unit making up the core of the gamma-tubulin ring complex. tmpzr1t_l9r_go_relaxed.owl gammaTuSC|gamma-tubulin small complex, centrosomal|gamma-tubulin small complex, spindle pole body|gamma-tubulin small complex, mitotic spindle pole body|Tub4 complex https://github.com/geneontology/go-ontology/issues/20967 GO:0000928|GO:0000927|GO:0061495 cellular_component owl:Class GO:0070794 biolink:NamedThing negative regulation of conidiophore development Any process that stops, prevents, or reduces the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:06:48Z biological_process owl:Class GO:0003056 biolink:NamedThing regulation of vascular associated smooth muscle contraction Any process that increases the frequency, rate or extent of vascular smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle contraction biological_process owl:Class GO:0045701 biolink:NamedThing negative regulation of spermatid nuclear differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of spermatid nuclear differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of spermatid nuclear differentiation|inhibition of spermatid nuclear differentiation|down regulation of spermatid nuclear differentiation|down-regulation of spermatid nuclear differentiation biological_process owl:Class GO:0008055 biolink:NamedThing ocellus pigment biosynthetic process The chemical reactions and pathways resulting in the formation of ocellus pigments, general or particular coloring matter in living organisms, found or utilized in the ocellus, a minute simple eye found in many invertebrates. tmpzr1t_l9r_go_relaxed.owl ocellus pigment synthesis|ocellus pigment anabolism|ocellus pigment biosynthesis|ocellus pigment formation biological_process owl:Class GO:0061060 biolink:NamedThing negative regulation of peptidoglycan recognition protein signaling pathway Any process that decreases the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of peptidoglycan recognition protein signalling pathway dph 2010-03-02T12:38:42Z biological_process owl:Class GO:0035442 biolink:NamedThing dipeptide transmembrane transport The directed movement of a dipeptide across a membrane by means of some agent such as a transporter or pore. A dipeptide is a combination of two amino acids linked together by a peptide (-CO-NH-) bond. tmpzr1t_l9r_go_relaxed.owl dipeptide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-13T09:18:33Z biological_process owl:Class GO:0035672 biolink:NamedThing oligopeptide transmembrane transport The process in which an oligopeptide is transported across a membrane. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl oligopeptide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2011-02-08T02:18:07Z biological_process owl:Class GO:0051468 biolink:NamedThing detection of glucocorticoid hormone stimulus The series of events by which a glucocorticoid hormone stimulus is received by a cell and converted into a molecular signal. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051467 biolink:NamedThing detection of steroid hormone stimulus The series of events by which a steroid hormone stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007198 biolink:NamedThing adenylate cyclase-inhibiting serotonin receptor signaling pathway The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl serotonin receptor, adenylyl cyclase inhibiting pathway|inhibition of adenylate cyclase activity by serotonin receptor signalling pathway|serotonin receptor, adenylate cyclase inhibiting pathway|inhibition of adenylate cyclase activity by serotonin receptor signaling pathway biological_process owl:Class GO:0098664 biolink:NamedThing G protein-coupled serotonin receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled serotonin receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl G-protein coupled serotonin receptor signaling pathway dos 2016-12-21T12:07:58Z biological_process owl:Class GO:0016422 biolink:NamedThing mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + m(7)G(5')pppAm = S-adenosyl-L-homocysteine + m(7)G(5')pppm(6)Am. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:mRNA (2'-O-methyladenosine-6-N-)-methyltransferase activity|S-adenosyl-L-methionine:mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity|messenger ribonucleate 2'-O-methyladenosine NG-methyltransferase activity EC:2.1.1.62|RHEA:22744|MetaCyc:2.1.1.62-RXN molecular_function owl:Class GO:0033516 biolink:NamedThing L-methionine biosynthetic process from homoserine via O-phospho-L-homoserine and cystathionine The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-phospho-L-homoserine and cystathionine. tmpzr1t_l9r_go_relaxed.owl methionine biosynthetic process from homoserine via O-phospho-L-homoserine and cystathionine|L-methionine synthesis from homoserine via O-phospho-L-homoserine and cystathionine|L-methionine formation from homoserine via O-phospho-L-homoserine and cystathionine|L-methionine anabolism from homoserine via O-phospho-L-homoserine and cystathionine MetaCyc:PWY-702 biological_process owl:Class GO:0019279 biolink:NamedThing L-methionine biosynthetic process from L-homoserine via cystathionine The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including L-homoserine, via the intermediate cystathionine. tmpzr1t_l9r_go_relaxed.owl methionine biosynthetic process from L-homoserine via cystathionine|L-methionine formation from L-homoserine via cystathionine|L-methionine synthesis from L-homoserine via cystathionine|L-methionine anabolism from L-homoserine via cystathionine MetaCyc:HOMOSER-METSYN-PWY biological_process owl:Class GO:0008674 biolink:NamedThing 2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity Catalysis of the reaction: 6-phospho-2-dehydro-3-deoxy-D-galactonate = D-glyceraldehyde 3-phosphate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxy-6-phosphogalactonic aldolase activity|6-phospho-2-dehydro-3-deoxygalactonate aldolase activity|2-dehydro-3-deoxyphosphogalactonate aldolase activity|phospho-2-keto-3-deoxygalactonic aldolase activity|2-keto-3-deoxy-6-phosphogalactonic acid aldolase activity|phospho-2-keto-3-deoxygalactonate aldolase activity|2-oxo-3-deoxygalactonate 6-phosphate aldolase activity|(KDPGal)aldolase activity|2-dehydro-3-deoxy-D-galactonate-6-phosphate D-glyceraldehyde-3-phosphate-lyase activity|6-phospho-2-keto-3-deoxygalactonate aldolase activity|2-dehydro-3-deoxy-D-galactonate-6-phosphate D-glyceraldehyde-3-phosphate-lyase (pyruvate-forming) RHEA:24464|KEGG_REACTION:R01064|MetaCyc:DEHYDDEOXPHOSGALACT-ALDOL-RXN|EC:4.1.2.21 molecular_function owl:Class GO:1900218 biolink:NamedThing negative regulation of apoptotic process involved in metanephric nephron tubule development Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl downregulation of apoptotic programmed cell death of metanephric nephron tubule development|inhibition of apoptotic programmed cell death of metanephric nephron tubule development|downregulation of programmed cell death by apoptosis of metanephric nephron tubule development|down-regulation of apoptosis of metanephric nephron tubule development|down-regulation of apoptotic cell death of metanephric nephron tubule development|inhibition of type I programmed cell death of metanephric nephron tubule development|down-regulation of programmed cell death by apoptosis of metanephric nephron tubule development|negative regulation of apoptotic process of metanephric nephron tubule development|downregulation of apoptotic process of metanephric nephron tubule development|inhibition of programmed cell death by apoptosis of metanephric nephron tubule development|down regulation of apoptotic programmed cell death of metanephric nephron tubule development|down regulation of apoptotic cell death of metanephric nephron tubule development|inhibition of apoptotic process of metanephric nephron tubule development|negative regulation of programmed cell death by apoptosis of metanephric nephron tubule development|downregulation of signaling (initiator) caspase activity of metanephric nephron tubule development|down-regulation of apoptotic process of metanephric nephron tubule development|negative regulation of apoptotic program of metanephric nephron tubule development|down-regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|negative regulation of apoptotic programmed cell death of metanephric nephron tubule development|down regulation of programmed cell death by apoptosis of metanephric nephron tubule development|down regulation of apoptotic program of metanephric nephron tubule development|down regulation of apoptosis of metanephric nephron tubule development|negative regulation of apoptotic cell death of metanephric nephron tubule development|inhibition of apoptotic process involved in metanephric nephron tubule development|downregulation of apoptotic program of metanephric nephron tubule development|downregulation of apoptosis of metanephric nephron tubule development|down-regulation of apoptotic program of metanephric nephron tubule development|down regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|down regulation of apoptotic process of metanephric nephron tubule development|down-regulation of apoptotic programmed cell death of metanephric nephron tubule development|negative regulation of type I programmed cell death of metanephric nephron tubule development|negative regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|downregulation of apoptotic cell death of metanephric nephron tubule development|downregulation of type I programmed cell death of metanephric nephron tubule development|down regulation of apoptotic process involved in metanephric nephron tubule development|down-regulation of apoptotic process involved in metanephric nephron tubule development|negative regulation of apoptosis of metanephric nephron tubule development|inhibition of apoptosis of metanephric nephron tubule development|downregulation of apoptotic process involved in metanephric nephron tubule development|inhibition of apoptotic cell death of metanephric nephron tubule development|inhibition of apoptotic program of metanephric nephron tubule development|down regulation of type I programmed cell death of metanephric nephron tubule development|inhibition of signaling (initiator) caspase activity of metanephric nephron tubule development|down-regulation of type I programmed cell death of metanephric nephron tubule development yaf 2012-03-22T10:54:01Z biological_process owl:Class GO:1900217 biolink:NamedThing regulation of apoptotic process involved in metanephric nephron tubule development Any process that modulates the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl regulation of apoptotic process of metanephric nephron tubule development|regulation of apoptotic cell death of metanephric nephron tubule development|regulation of apoptosis of metanephric nephron tubule development|regulation of apoptotic programmed cell death of metanephric nephron tubule development|regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|regulation of programmed cell death by apoptosis of metanephric nephron tubule development|regulation of type I programmed cell death of metanephric nephron tubule development|regulation of apoptotic program of metanephric nephron tubule development yaf 2012-03-22T10:53:51Z biological_process owl:Class GO:0070464 biolink:NamedThing alphav-beta3 integrin-collagen alpha3(VI) complex A protein complex that consists of an alphav-beta3 integrin complex bound to the alpha3 chain of type VI collagen; the integrin binds most strongly to unfolded collagen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000733 biolink:NamedThing regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation Any process that modulates the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation|regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation|regulation of GDNF receptor signaling pathway of ureteric bud formation|regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation yaf 2011-06-13T11:14:40Z biological_process owl:Class GO:0005628 biolink:NamedThing prospore membrane The prospore membrane is a double-membraned structure that extends from the cytoplasmic face of the spindle pole bodies to encompass the spindle pole bodies and the four nuclear lobes that are formed during meiosis. It helps isolate the meiotic nuclei from the cytoplasm during spore formation and serves as a foundation for the formation of the spore walls. An example of this component is found in Schizosaccharomyces pombe. tmpzr1t_l9r_go_relaxed.owl ascospore-type prospore membrane|FSM|forespore membrane cellular_component owl:Class GO:0032896 biolink:NamedThing palmitoyl-CoA 9-desaturase activity Catalysis of the reaction: palmitoyl-CoA + AH2 + O2 = palmitoleic acid (16:1delta9) + A + 2 H2O. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA delta9-desaturase acitivity molecular_function owl:Class GO:0016215 biolink:NamedThing acyl-CoA desaturase activity Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = desaturated-acyl-CoA + acceptor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl CoA desaturase activity https://github.com/geneontology/go-ontology/issues/21108 molecular_function owl:Class GO:0021895 biolink:NamedThing cerebral cortex neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050279 biolink:NamedThing sepiapterin deaminase activity Catalysis of the reaction: sepiapterin + H2O = xanthopterin-B2 + NH3. tmpzr1t_l9r_go_relaxed.owl sepiapterin aminohydrolase activity MetaCyc:SEPIAPTERIN-DEAMINASE-RXN|RHEA:14025|EC:3.5.4.24 molecular_function owl:Class GO:0042085 biolink:NamedThing 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule; dependent on the presence of 5-methyltetrahydropteroyltri-L-glutamate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106165 biolink:NamedThing negative regulation of exonucleolytic catabolism of deadenylated mRNA Any process that stops, prevents, or reduces the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl hjd 2019-01-15T15:42:13Z biological_process owl:Class GO:0090295 biolink:NamedThing nitrogen catabolite repression of transcription A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl nitrogen catabolite repression|negative regulation of transcription by nitrogen catabolites tb 2010-02-24T02:31:53Z biological_process owl:Class GO:0002623 biolink:NamedThing negative regulation of B cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl negative regulation of B lymphocyte antigen processing and presentation|negative regulation of B-cell antigen processing and presentation|negative regulation of B-lymphocyte antigen processing and presentation|downregulation of B cell antigen processing and presentation|inhibition of B cell antigen processing and presentation|down regulation of B cell antigen processing and presentation|down-regulation of B cell antigen processing and presentation biological_process owl:Class GO:0102735 biolink:NamedThing trihydroxybenzophenone synthase activity Catalysis of the reaction: benzoyl-CoA + 3 malonyl-CoA + 3 H+ = 2,4,6-trihydroxybenzophenone + 4 coenzyme A + 3 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7481|RHEA:35143|EC:2.3.1.220 molecular_function owl:Class GO:0015493 biolink:NamedThing lysine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: lysine(out) + H+(out) = lysine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl lysine:hydrogen symporter activity molecular_function owl:Class GO:0001042 biolink:NamedThing RNA polymerase I core binding Binding to a RNA polymerase I core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits. tmpzr1t_l9r_go_relaxed.owl krc 2010-09-23T01:39:23Z molecular_function owl:Class GO:0071955 biolink:NamedThing recycling endosome to Golgi transport The directed movement of substances from recycling endosomes to the Golgi. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-08T01:19:00Z biological_process owl:Class GO:0042147 biolink:NamedThing retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. tmpzr1t_l9r_go_relaxed.owl retrograde (endosome to Golgi) transport biological_process owl:Class GO:1902747 biolink:NamedThing negative regulation of lens fiber cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of lens fiber cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of lens fibre cell differentiation|inhibition of lens fiber cell differentiation|down regulation of lens fiber cell differentiation|down regulation of lens fibre cell differentiation|negative regulation of lens fibre cell differentiation|down-regulation of lens fibre cell differentiation|downregulation of lens fiber cell differentiation|inhibition of lens fibre cell differentiation|down-regulation of lens fiber cell differentiation mr 2014-03-03T23:19:32Z biological_process owl:Class GO:1902753 biolink:NamedThing negative regulation of renal amino acid absorption Any process that stops, prevents or reduces the frequency, rate or extent of renal amino acid absorption. tmpzr1t_l9r_go_relaxed.owl inhibition of renal amino acid absorption|downregulation of renal amino acid absorption|down-regulation of renal amino acid absorption|down regulation of renal amino acid absorption hjd 2014-03-05T15:44:01Z biological_process owl:Class GO:1905032 biolink:NamedThing negative regulation of membrane repolarization during cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of membrane repolarization during cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl inhibition of membrane repolarization during cardiac muscle cell action potential|downregulation of membrane repolarization during cardiac muscle cell action potential|down regulation of membrane repolarization during cardiac muscle cell action potential|down-regulation of membrane repolarization during cardiac muscle cell action potential rph 2016-03-07T10:24:44Z biological_process owl:Class GO:2000057 biolink:NamedThing negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of Wnt signaling pathway involved in digestive tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signaling pathway involved in digestive tract morphogenesis|negative regulation of Wnt receptor signalling pathway involved in digestive tract morphogenesis|negative regulation of Wnt-activated signaling pathway involved in digestive tract morphogenesis jl 2010-08-20T01:17:35Z biological_process owl:Class GO:0043993 biolink:NamedThing histone acetyltransferase activity (H3-K18 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 18) = CoA + histone H3 N6-acetyl-L-lysine (position 18). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K18 specific) molecular_function owl:Class GO:0035350 biolink:NamedThing FAD transmembrane transport The process in which flavin-adenine dinucleotide (FAD) is transported across a membrane. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form. tmpzr1t_l9r_go_relaxed.owl FAD membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:45:11Z biological_process owl:Class GO:0050893 biolink:NamedThing sensory processing Any neural process required for an organism to sense and interpret the dimensions of a sensory experience: modality, location, intensity and affect. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050890 biolink:NamedThing cognition The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cognition biological_process owl:Class GO:0004729 biolink:NamedThing oxygen-dependent protoporphyrinogen oxidase activity Catalysis of the reaction: 3 O(2) + protoporphyrinogen IX = 3 H(2)O(2) + protoporphyrin IX. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen-IX:oxygen oxidoreductase activity EC:1.3.3.4|MetaCyc:PROTOPORGENOXI-RXN|KEGG_REACTION:R03222|RHEA:25576|Reactome:R-HSA-189423 molecular_function owl:Class GO:0070818 biolink:NamedThing protoporphyrinogen oxidase activity Catalysis of the reaction: protoporphyrinogen IX + acceptor = protoporphyrin IX + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogenase activity|protoporphyrinogen IX oxidase activity|protoporphyrinogen-IX oxidase activity mah 2009-07-20T02:41:12Z molecular_function owl:Class GO:0061512 biolink:NamedThing protein localization to cilium A process in which a protein is transported to, or maintained in, a location within a cilium. tmpzr1t_l9r_go_relaxed.owl dph 2013-03-22T15:41:44Z biological_process owl:Class GO:1900792 biolink:NamedThing shamixanthone catabolic process The chemical reactions and pathways resulting in the breakdown of shamixanthone. tmpzr1t_l9r_go_relaxed.owl shamixanthone catabolism|shamixanthone degradation|shamixanthone breakdown di 2012-06-04T09:40:42Z biological_process owl:Class GO:0032223 biolink:NamedThing negative regulation of synaptic transmission, cholinergic Any process that stops, prevents, or reduces the frequency, rate or extent of cholinergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl downregulation of synaptic transmission, cholinergic|down regulation of synaptic transmission, cholinergic|down-regulation of synaptic transmission, cholinergic|inhibition of synaptic transmission, cholinergic biological_process owl:Class GO:1905337 biolink:NamedThing positive regulation of aggrephagy Any process that activates or increases the frequency, rate or extent of aggrephagy. tmpzr1t_l9r_go_relaxed.owl activation of aggrephagy|up regulation of aggrephagy|upregulation of aggrephagy|up-regulation of aggrephagy pad 2016-07-26T13:42:02Z biological_process owl:Class GO:1905335 biolink:NamedThing regulation of aggrephagy Any process that modulates the frequency, rate or extent of aggrephagy. tmpzr1t_l9r_go_relaxed.owl pad 2016-07-26T13:41:46Z biological_process owl:Class GO:0000774 biolink:NamedThing adenyl-nucleotide exchange factor activity Binds to and stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5252079 molecular_function owl:Class GO:0060590 biolink:NamedThing ATPase regulator activity Binds to and modulates the activity of an ATP hydrolysis activity. tmpzr1t_l9r_go_relaxed.owl ATP hydrolysis regulator activity https://github.com/geneontology/go-ontology/issues/20955 dph 2009-05-08T02:49:24Z molecular_function owl:Class GO:0046451 biolink:NamedThing diaminopimelate metabolic process The chemical reactions and pathways involving diaminopimelate, the anion of the dicarboxylic acid 2,6-diaminoheptanedioic acid. It is an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl diaminopimelate metabolism biological_process owl:Class GO:0002731 biolink:NamedThing negative regulation of dendritic cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl down-regulation of dendritic cell cytokine production|down regulation of dendritic cell cytokine production|downregulation of dendritic cell cytokine production|inhibition of dendritic cell cytokine production biological_process owl:Class GO:0044716 biolink:NamedThing 8-oxo-GDP phosphatase activity Catalysis of the reaction 8-oxo-GDP + H2O = 8-oxo-GMP + phosphate. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.58|RHEA:62356 jl 2012-10-18T13:32:39Z molecular_function owl:Class GO:0017110 biolink:NamedThing nucleoside-diphosphatase activity Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleoside monophosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inosine diphosphatase|nucleoside diphosphate phosphohydrolase activity|nucleoside diphosphate phosphatase activity|type L nucleoside diphosphatase|apyrase activity|nucleoside-diphosphate phosphohydrolase activity|nucleoside 5'-diphosphatase activity|nucleoside diphosphatase activity|type B nucleoside diphosphatase|inosine 5'-diphosphatase|NDPase activity Reactome:R-HSA-8850854|Reactome:R-HSA-2395876|Reactome:R-HSA-8851396|Reactome:R-HSA-8851129|MetaCyc:NUCLEOSIDE-DIPHOSPHATASE-RXN|EC:3.6.1.6|Reactome:R-HSA-8851550|Reactome:R-HSA-8851225|RHEA:36799|Reactome:R-HSA-8851356 molecular_function owl:Class GO:0032928 biolink:NamedThing regulation of superoxide anion generation Any process that modulates the frequency, rate or extent of enzymatic generation of superoxide by a cell. tmpzr1t_l9r_go_relaxed.owl regulation of superoxide release biological_process owl:Class GO:0016008 biolink:NamedThing major mitochondrial derivative The larger of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation; the major mitochondrial derivative is ovoid and darker than the minor derivative. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20737 cellular_component owl:Class GO:0016007 biolink:NamedThing mitochondrial derivative The major and minor mitochondrial derivatives are the mitochondria of the sperm tail and derive by the unfolding of the Nebenkern during flagellum elongation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20737 cellular_component owl:Class GO:2000042 biolink:NamedThing negative regulation of double-strand break repair via homologous recombination Any process that stops, prevents, or reduces the frequency, rate or extent of double-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl negative regulation of HDR|negative regulation of HRR|negative regulation of Rad51-dependent recombinational repair|negative regulation of homologous recombinational repair|negative regulation of Rhp51-dependent recombinational repair|negative regulation of homology-directed repair tb 2010-08-19T06:37:08Z biological_process owl:Class GO:0071086 biolink:NamedThing alphaIIb-beta3 integrin-CD9-CD47-platelet glycoprotein Ib complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface proteins CD9 and CD47, and the heterodimeric platelet glycoprotein Ib. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-CD9-GP1b-CD47 complex mah 2009-11-06T04:45:08Z cellular_component owl:Class GO:0090665 biolink:NamedThing glycoprotein complex A protein complex containing at least one glycosylated protein, may be held together by both covalent and noncovalent bonds. tmpzr1t_l9r_go_relaxed.owl An example is the Dictyostelium multi protein pspB complex, which is secreted from prespore vesicles and incorporated into the spore coat. tb 2015-12-11T17:45:23Z cellular_component owl:Class GO:1900264 biolink:NamedThing positive regulation of DNA-directed DNA polymerase activity Any process that activates or increases the frequency, rate or extent of DNA-directed DNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of deoxyribonucleic acid duplicase activity|positive regulation of DNA replicase activity|up regulation of DNA polymerase gamma|up-regulation of sequenase|up regulation of nu DNA polymerase activity|positive regulation of sigma DNA polymerase activity|positive regulation of theta DNA polymerase activity|positive regulation of epsilon DNA polymerase activity|up-regulation of iota DNA polymerase activity|activation of zeta DNA polymerase activity|up-regulation of alpha DNA polymerase activity|activation of duplicase|up regulation of DNA-dependent DNA polymerase activity|up-regulation of Taq Pol I|activation of DNA polymerase I|up-regulation of epsilon DNA polymerase activity|up regulation of iota DNA polymerase activity|upregulation of theta DNA polymerase activity|positive regulation of deoxyribonucleic duplicase activity|up regulation of DNA polymerase beta|upregulation of deoxyribonucleic acid duplicase activity|positive regulation of iota DNA polymerase activity|upregulation of DNA polymerase alpha|upregulation of alpha DNA polymerase activity|positive regulation of DNA polymerase I|activation of DNA polymerase V activity|up regulation of kappa DNA polymerase activity|up-regulation of deoxyribonucleic duplicase activity|positive regulation of DNA polymerase gamma|upregulation of kappa DNA polymerase activity|positive regulation of sequenase|up-regulation of lambda DNA polymerase activity|up-regulation of delta DNA polymerase activity|activation of Taq Pol I|upregulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|positive regulation of eta DNA polymerase activity|activation of gamma DNA-directed DNA polymerase activity|activation of DNA polymerase gamma|upregulation of DNA polymerase gamma|up regulation of sequenase|activation of sequenase|upregulation of zeta DNA polymerase activity|upregulation of DNA-dependent DNA polymerase activity|activation of eta DNA polymerase activity|up-regulation of DNA nucleotidyltransferase (DNA-directed) activity|up regulation of deoxyribonucleic polymerase I|activation of DNA-dependent DNA polymerase activity|up regulation of zeta DNA polymerase activity|up-regulation of Klenow fragment|positive regulation of duplicase|upregulation of sequenase|up regulation of DNA replicase activity|up regulation of DNA nucleotidyltransferase (DNA-directed) activity|positive regulation of beta DNA polymerase activity|positive regulation of deoxyribonucleic acid duplicase activity|up regulation of Taq DNA polymerase|up-regulation of nu DNA polymerase activity|upregulation of DNA-directed DNA polymerase activity|up-regulation of zeta DNA polymerase activity|positive regulation of DNA polymerase beta|positive regulation of DNA nucleotidyltransferase (DNA-directed) activity|activation of Taq DNA polymerase|up-regulation of DNA polymerase beta|positive regulation of lambda DNA polymerase activity|up-regulation of DNA duplicase activity|up regulation of Taq Pol I|upregulation of DNA replicase activity|activation of Klenow fragment|up-regulation of kappa DNA polymerase activity|activation of DNA polymerase alpha|upregulation of deoxyribonucleic polymerase I|upregulation of sigma DNA polymerase activity|up-regulation of Tca DNA polymerase|up-regulation of beta DNA polymerase activity|positive regulation of nu DNA polymerase activity|activation of nu DNA polymerase activity|upregulation of deoxyribonucleic duplicase activity|upregulation of DNA nucleotidyltransferase (DNA-directed) activity|upregulation of DNA polymerase III|upregulation of DNA polymerase V activity|up regulation of Tca DNA polymerase|up regulation of DNA polymerase II|up regulation of DNA duplicase activity|activation of beta DNA polymerase activity|up-regulation of DNA replicase activity|up regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|positive regulation of Klenow fragment|activation of iota DNA polymerase activity|activation of deoxyribonucleic duplicase activity|up regulation of alpha DNA polymerase activity|up regulation of DNA polymerase III|upregulation of gamma DNA-directed DNA polymerase activity|positive regulation of kappa DNA polymerase activity|up regulation of gamma DNA-directed DNA polymerase activity|positive regulation of gamma DNA-directed DNA polymerase activity|up-regulation of sigma DNA polymerase activity|positive regulation of deoxyribonucleic polymerase I|upregulation of mu DNA polymerase activity|up-regulation of DNA-directed DNA polymerase activity|activation of theta DNA polymerase activity|positive regulation of DNA polymerase III|up regulation of duplicase|up regulation of deoxyribonucleic duplicase activity|up regulation of Klenow fragment|up-regulation of eta DNA polymerase activity|activation of DNA-directed DNA polymerase activity|upregulation of iota DNA polymerase activity|up-regulation of gamma DNA-directed DNA polymerase activity|activation of DNA polymerase II|activation of DNA polymerase III|upregulation of DNA polymerase II|upregulation of duplicase|upregulation of Tca DNA polymerase|positive regulation of DNA polymerase V activity|up-regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|activation of delta DNA polymerase activity|up-regulation of DNA polymerase V activity|up-regulation of deoxyribonucleic polymerase I|upregulation of beta DNA polymerase activity|positive regulation of zeta DNA polymerase activity|positive regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|up regulation of lambda DNA polymerase activity|upregulation of DNA polymerase beta|upregulation of Taq Pol I|up regulation of DNA polymerase alpha|activation of sigma DNA polymerase activity|up-regulation of DNA polymerase I|up regulation of eta DNA polymerase activity|upregulation of eta DNA polymerase activity|up regulation of mu DNA polymerase activity|upregulation of DNA polymerase I|up regulation of DNA polymerase V activity|activation of deoxyribonucleic polymerase I|up-regulation of DNA polymerase II|activation of kappa DNA polymerase activity|up-regulation of DNA-dependent DNA polymerase activity|up regulation of beta DNA polymerase activity|activation of epsilon DNA polymerase activity|activation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|positive regulation of Taq DNA polymerase|positive regulation of delta DNA polymerase activity|activation of DNA nucleotidyltransferase (DNA-directed) activity|activation of lambda DNA polymerase activity|up regulation of delta DNA polymerase activity|up regulation of theta DNA polymerase activity|upregulation of delta DNA polymerase activity|upregulation of DNA duplicase activity|up regulation of DNA polymerase I|upregulation of lambda DNA polymerase activity|upregulation of nu DNA polymerase activity|up-regulation of theta DNA polymerase activity|activation of DNA polymerase beta|up regulation of epsilon DNA polymerase activity|activation of Tca DNA polymerase|up-regulation of duplicase|activation of mu DNA polymerase activity|activation of DNA replicase activity|activation of deoxyribonucleic acid duplicase activity|activation of alpha DNA polymerase activity|upregulation of Klenow fragment|positive regulation of Taq Pol I|up-regulation of mu DNA polymerase activity|positive regulation of DNA-dependent DNA polymerase activity|up-regulation of Taq DNA polymerase|up-regulation of DNA polymerase III|positive regulation of DNA polymerase alpha|up-regulation of DNA polymerase alpha|up regulation of DNA-directed DNA polymerase activity|positive regulation of Tca DNA polymerase|activation of DNA duplicase activity|positive regulation of alpha DNA polymerase activity|up-regulation of DNA polymerase gamma|upregulation of epsilon DNA polymerase activity|up regulation of sigma DNA polymerase activity|positive regulation of DNA polymerase II|positive regulation of DNA duplicase activity|positive regulation of mu DNA polymerase activity|up-regulation of deoxyribonucleic acid duplicase activity|upregulation of Taq DNA polymerase tb 2012-04-03T11:07:27Z biological_process owl:Class GO:1990047 biolink:NamedThing spindle matrix A proteinaceous, nuclear-derived structure that embeds the microtubule spindle apparatus from pole to pole in a microtubule-independent manner during mitosis. tmpzr1t_l9r_go_relaxed.owl pr 2013-02-18T08:51:47Z cellular_component owl:Class GO:0001914 biolink:NamedThing regulation of T cell mediated cytotoxicity Any process that modulates the frequency, rate, or extent of T cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl regulation of T-cell mediated cytolysis|regulation of T-cell mediated cell killing|regulation of T cell mediated apoptosis|regulation of T lymphocyte mediated cytotoxicity|regulation of T-cell mediated cell death|regulation of T cell mediated cell death|regulation of T-cell mediated apoptosis|regulation of T-cell mediated cytotoxicity|regulation of T cell mediated cytolysis|regulation of T cell mediated cell killing|regulation of T-lymphocyte mediated cytotoxicity biological_process owl:Class GO:0002709 biolink:NamedThing regulation of T cell mediated immunity Any process that modulates the frequency, rate, or extent of T cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte mediated immunity|regulation of T-cell mediated immunity|regulation of T-lymphocyte mediated immunity biological_process owl:Class GO:0150195 biolink:NamedThing transport across blood-cerebrospinal fluid barrier The directed movement of substances (e.g. macromolecules, small molecules, ions) through the blood-cerebrospinal fluid barrier. tmpzr1t_l9r_go_relaxed.owl transport across BCSFB|transport across blood/CSF barrier|transport across blood/cerebrospinal fluid barrier|transport across blood-CSF barrier bc 2020-03-26T14:43:04Z biological_process owl:Class GO:0010232 biolink:NamedThing vascular transport The directed movement of substances, into, out of or within a cell, either in a vascular tissue or in the vascular membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061268 biolink:NamedThing mesonephric interstitial fibroblast fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric interstitial fibroblast. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T03:16:52Z biological_process owl:Class GO:0045799 biolink:NamedThing positive regulation of chromatin assembly or disassembly Any process that activates or increases the frequency, rate or extent of chromatin assembly or disassembly. tmpzr1t_l9r_go_relaxed.owl activation of chromatin assembly or disassembly|up-regulation of chromatin assembly or disassembly|positive regulation of chromatin assembly/disassembly|stimulation of chromatin assembly or disassembly|up regulation of chromatin assembly or disassembly|upregulation of chromatin assembly or disassembly biological_process owl:Class GO:1905269 biolink:NamedThing positive regulation of chromatin organization Any process that activates or increases the frequency, rate or extent of chromatin organization. tmpzr1t_l9r_go_relaxed.owl up regulation of establishment or maintenance of chromatin architecture|positive regulation of chromatin modification|up regulation of chromatin organisation|up-regulation of establishment or maintenance of chromatin architecture|up regulation of chromatin organization|up-regulation of chromatin organization|activation of chromatin organization|positive regulation of establishment or maintenance of chromatin architecture|positive regulation of chromatin organisation|upregulation of chromatin organisation|upregulation of establishment or maintenance of chromatin architecture|activation of establishment or maintenance of chromatin architecture|upregulation of chromatin organization|activation of chromatin organisation|up-regulation of chromatin organisation pr 2016-06-15T20:14:56Z GO:1903310 biological_process owl:Class GO:0004660 biolink:NamedThing protein farnesyltransferase activity Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate. tmpzr1t_l9r_go_relaxed.owl CAAX farnesyltransferase activity|protein-cysteine farnesyltransferase activity|farnesyl-diphosphate:protein-cysteine farnesyltransferase activity|FTase activity Reactome:R-HSA-9647978|Reactome:R-HSA-2530501|RHEA:13345|MetaCyc:2.5.1.58-RXN|EC:2.5.1.58 The catalyzed reaction transfers a farnesyl group from farnesyl diphosphate to a target protein. There is no relationship between this activity and farnesyltransferase activity, GO:0004311, where the catalyzed reaction forms (free) geranylgeranyl diphosphate. GO:0018223 molecular_function owl:Class GO:0008318 biolink:NamedThing protein prenyltransferase activity Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein. tmpzr1t_l9r_go_relaxed.owl GO:0008244 molecular_function owl:Class GO:1990341 biolink:NamedThing thrombospondin complex A homotrimeric or homopentameric glycoprotein that functions at the interface of the cell membrane and the extracellular matrix through its interactions with proteins and proteoglycans, such as collagens, integrins and fibronectin, to regulate matrix structure and cellular behaviour. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-21T14:27:07Z cellular_component owl:Class GO:0102923 biolink:NamedThing 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase activity Catalysis of the reaction: 3'-N-debenzoyltaxol + benzoyl-CoA = H+ + paclitaxel + coenzyme A. tmpzr1t_l9r_go_relaxed.owl RHEA:33687|MetaCyc:RXN-8859 molecular_function owl:Class GO:0035647 biolink:NamedThing 3-oxo-delta(4,5)-steroid 5-beta-reductase activity Catalysis of the reaction: a 3-oxo-delta-4,5-steroid + NADPH + H(+) = a 5-beta-3-oxo-steroid + NADP(+). tmpzr1t_l9r_go_relaxed.owl 3-oxo-delta4,5-steroid 5beta-reductase bf 2011-01-24T01:31:30Z molecular_function owl:Class GO:0042814 biolink:NamedThing monopolar cell growth Polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl monopolar cell elongation|polar cell elongation|monopolar growth biological_process owl:Class GO:0009826 biolink:NamedThing unidimensional cell growth The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. tmpzr1t_l9r_go_relaxed.owl cell elongation|cell growth along one axis|polar cell growth|cell growth in one dimension|cell morphogenesis by unidimensional growth|polarized cell growth Unidimensional cell growth refers to a change in both cell size and cell shape. For cell shape changes where cell size is not affected, consider instead the term 'regulation of cell shape ; GO:0008360' and its children. biological_process owl:Class GO:0071746 biolink:NamedThing IgA immunoglobulin complex, circulating A protein complex composed of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgA2 antibody|IgA antibody|IgA1 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0042571 biolink:NamedThing immunoglobulin complex, circulating An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component. tmpzr1t_l9r_go_relaxed.owl antibody Wikipedia:Antibody Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. cellular_component owl:Class GO:1903207 biolink:NamedThing regulation of hydrogen peroxide-induced neuron death Any process that modulates the frequency, rate or extent of hydrogen peroxide-induced neuron death. tmpzr1t_l9r_go_relaxed.owl regulation of neuronal cell death in response to hydrogen peroxide|regulation of neuron death in response to hydrogen peroxide|regulation of neuron death in response to H2O2 bf 2014-07-21T16:27:05Z biological_process owl:Class GO:1903205 biolink:NamedThing regulation of hydrogen peroxide-induced cell death Any process that modulates the frequency, rate or extent of hydrogen peroxide-induced cell death. tmpzr1t_l9r_go_relaxed.owl regulation of cell death in response to H2O2|regulation of hydrogen peroxide-mediated cell death|regulation of cell death in response to hydrogen peroxide|protection against hydrogen peroxide-mediated cell death bf 2014-07-21T16:21:47Z biological_process owl:Class GO:0045774 biolink:NamedThing negative regulation of beta 2 integrin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta 2 integrins. tmpzr1t_l9r_go_relaxed.owl negative regulation of beta 2 integrin biosynthesis|down-regulation of beta 2 integrin biosynthetic process|inhibition of beta 2 integrin biosynthetic process|negative regulation of beta 2 integrin synthesis|negative regulation of beta 2 integrin anabolism|downregulation of beta 2 integrin biosynthetic process|negative regulation of beta 2 integrin formation|down regulation of beta 2 integrin biosynthetic process biological_process owl:Class GO:0045720 biolink:NamedThing negative regulation of integrin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins. tmpzr1t_l9r_go_relaxed.owl negative regulation of integrin anabolism|downregulation of integrin biosynthetic process|negative regulation of integrin synthesis|inhibition of integrin biosynthetic process|down regulation of integrin biosynthetic process|negative regulation of integrin formation|down-regulation of integrin biosynthetic process|negative regulation of integrin biosynthesis biological_process owl:Class GO:0034110 biolink:NamedThing regulation of homotypic cell-cell adhesion Any process that modulates the frequency, rate, or extent of homotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010543 biolink:NamedThing regulation of platelet activation Any process that modulates the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050865 biolink:NamedThing regulation of cell activation Any process that modulates the frequency, rate or extent of cell activation, the change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010050 biolink:NamedThing vegetative phase change Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042101 biolink:NamedThing T cell receptor complex A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte receptor complex|TCR complex|TCR|T lymphocyte receptor complex|T-cell receptor complex Wikipedia:T_cell_receptor cellular_component owl:Class GO:1903315 biolink:NamedThing negative regulation of nitrogen cycle metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of nitrogen cycle metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of nitrogen cycle metabolic process|down-regulation of nitrogen cycle metabolic process|inhibition of nitrogen cycle metabolic process|downregulation of nitrogen cycle metabolic process vw 2014-08-18T12:57:42Z biological_process owl:Class GO:2000377 biolink:NamedThing regulation of reactive oxygen species metabolic process Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ROS metabolic process|regulation of reactive oxygen species metabolism mah 2011-02-11T02:06:36Z biological_process owl:Class GO:0010880 biolink:NamedThing regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum Any process that modulates the rate, frequency or extent of release of sequestered calcium ion into cytosol by the sarcoplasmic reticulum, the process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097165 biolink:NamedThing nuclear stress granule A dense aggregation in the nucleus composed of proteins and RNAs that appear when the cell is under stress. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-28T07:49:55Z cellular_component owl:Class GO:0035770 biolink:NamedThing ribonucleoprotein granule A non-membranous macromolecular complex containing proteins and translationally silenced mRNAs. RNA granules contain proteins that control the localization, stability, and translation of their RNA cargo. Different types of RNA granules (RGs) exist, depending on the cell type and cellular conditions. tmpzr1t_l9r_go_relaxed.owl mRNP granule|RNP granule|RNA granule bf 2011-04-01T10:50:47Z cellular_component owl:Class GO:0031626 biolink:NamedThing beta-endorphin binding Binding to beta-endorphin, a peptide generated by the cleavage of pro-opiomelanocortin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042165 biolink:NamedThing neurotransmitter binding Binding to a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002283 biolink:NamedThing neutrophil activation involved in immune response The change in morphology and behavior of a neutrophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl neutrophil activation during immune response biological_process owl:Class GO:0042119 biolink:NamedThing neutrophil activation The change in morphology and behavior of a neutrophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051918 biolink:NamedThing negative regulation of fibrinolysis Any process that stops, prevents, or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots. tmpzr1t_l9r_go_relaxed.owl inhibition of fibrinolysis|down regulation of fibrinolysis|downregulation of fibrinolysis|down-regulation of fibrinolysis biological_process owl:Class GO:0051917 biolink:NamedThing regulation of fibrinolysis Any process that modulates the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010308 biolink:NamedThing acireductone dioxygenase (Ni2+-requiring) activity Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 3-(methylthio)propanoate + CO + formate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase activity|ARD activity|1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate- and CO-forming)|acireductone dioxygenase activity|E-2 activity KEGG_REACTION:R07363|EC:1.13.11.53|MetaCyc:R146-RXN|RHEA:14161 molecular_function owl:Class GO:0000922 biolink:NamedThing spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. tmpzr1t_l9r_go_relaxed.owl GO:0030615 cellular_component owl:Class GO:0018240 biolink:NamedThing protein S-linked glycosylation via cysteine The glycosylation of protein via the sulfur atom of peptidyl-cysteine, forming S-glycosyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl protein amino acid S-linked glycosylation via cysteine RESID:AA0152 biological_process owl:Class GO:0018280 biolink:NamedThing protein S-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via a sulfur atom of a peptidyl-amino-acid such as cysteine or methionine. tmpzr1t_l9r_go_relaxed.owl protein amino acid S-linked glycosylation biological_process owl:Class GO:0043052 biolink:NamedThing thermotaxis The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature. tmpzr1t_l9r_go_relaxed.owl taxis in response to temperature stimulus Wikipedia:Thermotaxis biological_process owl:Class GO:0035394 biolink:NamedThing regulation of chemokine (C-X-C motif) ligand 9 production Any process that modulates the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9. tmpzr1t_l9r_go_relaxed.owl regulation of CXCL9 production|regulation of MIG production bf 2010-03-23T10:06:19Z biological_process owl:Class GO:0015485 biolink:NamedThing cholesterol binding Binding to cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032934 biolink:NamedThing sterol binding Binding to a sterol, a steroid containing a hydroxy group in the 3 position, closely related to cholestan-3-ol. tmpzr1t_l9r_go_relaxed.owl sterol carrier activity GO:0005498 molecular_function owl:Class GO:0033577 biolink:NamedThing protein glycosylation in endoplasmic reticulum The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl protein amino acid glycosylation in ER|core glycosylation|protein amino acid glycosylation in endoplasmic reticulum biological_process owl:Class GO:0046819 biolink:NamedThing protein secretion by the type V secretion system The process in which proteins mediate their own secretion across the outer membrane through a beta-barrel pore structure formed by the C-terminal domain of the protein precursor. Following passage across the outer membrane, the mature protein is released from the pore by an autocatalytic activity. Proteins secreted by the Type V system are first translocated across the plasma membrane by the Sec pathway. tmpzr1t_l9r_go_relaxed.owl protein secretion by the type V protein secretion system|protein secretion by the autotransporter system|autotransporter system|type V protein secretion system biological_process owl:Class GO:0098776 biolink:NamedThing protein transport across the cell outer membrane The directed movement of proteins across the cell outer membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098032 biolink:NamedThing icosahedral viral capsid, collar fiber A fiber attached to the collar structure of some icosahedral viral capsids. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-19T15:05:16Z cellular_component owl:Class GO:0098022 biolink:NamedThing viral capsid, fiber A type of capsid decoration composed of fiber structures. tmpzr1t_l9r_go_relaxed.owl head/capsid fiber bm 2012-07-19T11:56:32Z cellular_component owl:Class GO:0042162 biolink:NamedThing telomeric DNA binding Binding to a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end. tmpzr1t_l9r_go_relaxed.owl telomere binding|telomeric repeat binding molecular_function owl:Class GO:0043565 biolink:NamedThing sequence-specific DNA binding Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. tmpzr1t_l9r_go_relaxed.owl sequence specific DNA binding molecular_function owl:Class GO:0015450 biolink:NamedThing protein-transporting ATPase activity Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. tmpzr1t_l9r_go_relaxed.owl protein translocase activity|P-P-bond-hydrolysis-driven protein transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/21271 Reactome:R-HSA-1222523 molecular_function owl:Class GO:0008320 biolink:NamedThing protein transmembrane transporter activity Enables the transfer of a protein from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl protein channel activity Reactome:R-HSA-5250972|Reactome:R-HSA-9636375|Reactome:R-HSA-1299475|Reactome:R-HSA-5246514|Reactome:R-HSA-5205661|Reactome:R-HSA-5210947|Reactome:R-HSA-184269|Reactome:R-HSA-1268022|Reactome:R-HSA-3149434|Reactome:R-HSA-5250616|Reactome:R-HSA-5336420|Reactome:R-HSA-5244506|Reactome:R-HSA-9698930|Reactome:R-HSA-9698933|Reactome:R-HSA-5228406|Reactome:R-HSA-5229111|Reactome:R-HSA-5210943|Reactome:R-HSA-5244428|Reactome:R-HSA-5250884|Reactome:R-HSA-5244404 GO:0015266|GO:0015463 molecular_function owl:Class GO:0005760 biolink:NamedThing gamma DNA polymerase complex A DNA polymerase complex consisting of a large subunit, responsible for the catalytic activities, and a small accessory subunit. Functions in the replication and repair of mitochondrial DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042575 biolink:NamedThing DNA polymerase complex A protein complex that possesses DNA polymerase activity and is involved in template directed synthesis of DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032914 biolink:NamedThing positive regulation of transforming growth factor beta1 production Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta1. tmpzr1t_l9r_go_relaxed.owl upregulation of transforming growth factor-beta1 production|up regulation of transforming growth factor-beta1 production|positive regulation of TGFB1 production|activation of transforming growth factor-beta1 production|positive regulation of TGF-B1 production|up-regulation of transforming growth factor-beta1 production|stimulation of transforming growth factor-beta1 production biological_process owl:Class GO:0004726 biolink:NamedThing non-membrane spanning protein tyrosine phosphatase activity Catalysis of the reaction: non-membrane spanning protein tyrosine phosphate + H2O = non-membrane spanning protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-177926|Reactome:R-HSA-177935|Reactome:R-HSA-177923|Reactome:R-HSA-177924|Reactome:R-HSA-9635739 molecular_function owl:Class GO:0004725 biolink:NamedThing protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl PTP-phosphatase activity|[phosphotyrosine]protein phosphatase activity|tyrosylprotein phosphatase activity|phosphotyrosine protein phosphatase activity|phosphotyrosylprotein phosphatase activity|protein phosphotyrosine phosphatase activity|tyrosine O-phosphate phosphatase activity|protein-tyrosine-phosphatase activity|phosphotyrosine phosphatase activity|phosphotyrosine histone phosphatase activity|phosphoprotein phosphatase (phosphotyrosine) activity|PPT-phosphatase activity|PTPase activity|protein-tyrosine-phosphate phosphohydrolase activity EC:3.1.3.48|Reactome:R-HSA-1549564|Reactome:R-HSA-8864125|Reactome:R-HSA-6807008|Reactome:R-HSA-8855381|Reactome:R-HSA-6807027|MetaCyc:PROTEIN-TYROSINE-PHOSPHATASE-RXN|Reactome:R-HSA-74733|Reactome:R-HSA-74748|Reactome:R-HSA-5683967|Reactome:R-HSA-8867658|Reactome:R-HSA-997314|Reactome:R-HSA-203797|Reactome:R-HSA-9603719|Reactome:R-HSA-1169210|Reactome:R-HSA-202214|Reactome:R-HSA-391868|Reactome:R-HSA-997309|Reactome:R-HSA-8849435|Reactome:R-HSA-9636439|RHEA:10684|Reactome:R-HSA-8863804|Reactome:R-HSA-8867047|Reactome:R-HSA-8852200|Reactome:R-HSA-1169188|Reactome:R-HSA-9698408|Reactome:R-HSA-389758|Reactome:R-HSA-74747|Reactome:R-HSA-914036|Reactome:R-HSA-997311|Reactome:R-HSA-8864036|Reactome:R-HSA-1169192|Reactome:R-HSA-9635461|Reactome:R-HSA-877308|Reactome:R-HSA-997326|Reactome:R-HSA-445089|Reactome:R-HSA-377643|Reactome:R-HSA-8864029|Reactome:R-HSA-8937767 molecular_function owl:Class GO:0090110 biolink:NamedThing COPII-coated vesicle cargo loading The formation of a macromolecular complex between the COPII coat proteins and proteins and/or lipoproteins that are going to be transported by the COPII vesicle to the Golgi. tmpzr1t_l9r_go_relaxed.owl cargo loading into COPII vesicle|cargo loading into COPII-coated vesicle|cargo selection into COPII-coated vesicle|COPII coat-cargo complex assembly tb 2009-12-06T08:28:34Z biological_process owl:Class GO:1903559 biolink:NamedThing 3-cyano-L-alanine catabolic process The chemical reactions and pathways resulting in the breakdown of 3-cyano-L-alanine. tmpzr1t_l9r_go_relaxed.owl 3-cyano-L-alanine breakdown|3-cyano-L-alanine degradation|3-cyano-L-alanine catabolism kmv 2014-10-21T17:13:10Z biological_process owl:Class GO:0043522 biolink:NamedThing leucine zipper domain binding Binding to a leucine zipper domain, a protein secondary structure exhibiting a periodic repetition of leucine residues at every seventh position over a distance covering eight helical turns. tmpzr1t_l9r_go_relaxed.owl leucine zipper binding molecular_function owl:Class GO:0030275 biolink:NamedThing LRR domain binding Binding to a LRR domain (leucine rich repeats) of a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902134 biolink:NamedThing (+)-secoisolariciresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-secoisolariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-secoisolariciresinol degradation|(+)-secoisolariciresinol breakdown|(+)-secoisolariciresinol catabolism ms 2013-05-21T08:50:09Z biological_process owl:Class GO:0019091 biolink:NamedThing mitochondrial lrRNA export from mitochondrion The process in which a lrRNA, large subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol. tmpzr1t_l9r_go_relaxed.owl mitochondrial lrRNA export|mitochondrial lrRNA, mitochondrial export|export of mitochondrial lrRNA|mitochondrial lrRNA transport from mitochondrion|mitochondrial lrRNA export out of mitochondrion|mitochondrial lrRNA export from mitochondria biological_process owl:Class GO:0019090 biolink:NamedThing mitochondrial rRNA export from mitochondrion The process in which a rRNA, ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol. tmpzr1t_l9r_go_relaxed.owl export of mitochondrial rRNA|mitochondrial rRNA export from mitochondria|mitochondrial rRNA, mitochondrial export|mitochondrial rRNA export out of mitochondrion|mitochondrial rRNA transport from mitochondrion|mitochondrial rRNA export biological_process owl:Class GO:1990569 biolink:NamedThing UDP-N-acetylglucosamine transmembrane transport The process in which UDP-N-acetylglucosamine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine transport vw 2014-11-27T11:56:35Z GO:0015788 biological_process owl:Class GO:0061063 biolink:NamedThing positive regulation of nematode larval development Any process that increases the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T01:03:34Z biological_process owl:Class GO:0060382 biolink:NamedThing regulation of DNA strand elongation Any process that modulates the rate, frequency or extent of DNA strand elongation. DNA strand elongation is the DNA metabolic process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901273 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconic acid catabolic process The chemical reactions and pathways resulting in the breakdown of 2-dehydro-3-deoxy-D-gluconic acid. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-D-gluconic acid degradation|2-dehydro-3-deoxy-D-gluconic acid catabolism|2-dehydro-3-deoxy-D-gluconic acid breakdown yaf 2012-08-17T14:46:37Z biological_process owl:Class GO:0021727 biolink:NamedThing intermediate reticular formation development The process whose specific outcome is the progression of the intermediate reticular formation over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl intermediate reticular nucleus development biological_process owl:Class GO:0062172 biolink:NamedThing lutein catabolic process The chemical reactions and pathways resulting in the breakdown of lutein. tmpzr1t_l9r_go_relaxed.owl lutein catabolism|lutein breakdown|lutein degradation dph 2019-11-18T16:06:07Z biological_process owl:Class GO:0062170 biolink:NamedThing lutein metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform lutein. tmpzr1t_l9r_go_relaxed.owl lutein metabolism dph 2019-11-18T15:56:36Z biological_process owl:Class GO:0102912 biolink:NamedThing (-)-lactol dehydrogenase activity Catalysis of the reaction: (-)-lactol + NAD <=> H+ + (-)-matairesinol + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8681 molecular_function owl:Class GO:0043336 biolink:NamedThing site-specific telomere resolvase activity Catalysis of a site-specific breakage and reunion reaction that generates two hairpin telomeres from a replicated telomere substrate. Occurs via a two-step transesterification with a protein-DNA intermediate similar to that used by topoisomerases and site-specific recombinases. tmpzr1t_l9r_go_relaxed.owl TelN|ResT Note that while this enzyme uses a similar reaction chemistry to topoisomerases and site-specific recombinases, it performs a unique reaction. Topoisomerases promote breakage and reunion of either one or two DNA strands to alter the topological state of a DNA molecule. Site-specific recombinases perform a more complex reaction in which four strands are broken and subsequently joined to a different DNA duplex, resulting in the production of a recombinant product. The telomere resolvases on the other hand, must break two phosphodiester bonds in a single DNA duplex (one on each strand) and join each end with the opposite DNA strand to form covalently closed hairpin telomeres. molecular_function owl:Class GO:0046337 biolink:NamedThing phosphatidylethanolamine metabolic process The chemical reactions and pathways involving phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. It is a major structural phospholipid in mammalian systems. It tends to be more abundant than phosphatidylcholine in the internal membranes of the cell and is an abundant component of prokaryotic membranes. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine metabolism biological_process owl:Class GO:0140081 biolink:NamedThing glycosylated region protein binding Binding to a glycosylated region of a protein. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-25T10:58:31Z molecular_function owl:Class GO:0071865 biolink:NamedThing regulation of apoptotic process in bone marrow cell Any process that modulates the occurrence or rate of cell death by apoptotic process in the bone marrow. tmpzr1t_l9r_go_relaxed.owl regulation of apoptotic process in bone marrow|regulation of apoptosis in bone marrow mah 2010-09-13T02:16:43Z biological_process owl:Class GO:0033714 biolink:NamedThing secondary-alcohol oxidase activity Catalysis of the reaction: O(2) + secondary alcohol = H(2)O(2) + ketone. tmpzr1t_l9r_go_relaxed.owl polyvinyl alcohol oxidase activity|secondary alcohol oxidase activity|secondary-alcohol:oxygen oxidoreductase activity MetaCyc:SECONDARY-ALCOHOL-OXIDASE-RXN|KEGG_REACTION:R02277|RHEA:23180|EC:1.1.3.18 molecular_function owl:Class GO:1990710 biolink:NamedThing MutS complex A homodimeric mismatch repair complex involved in binding to and correcting insertion/deletion mutations. tmpzr1t_l9r_go_relaxed.owl MutS mismatch repair complex An example of this is MutS in E. coli (UniProt symbol P23909) in PMID:21666597 (inferred from physical interaction). bhm 2015-03-25T11:42:56Z cellular_component owl:Class GO:0033090 biolink:NamedThing positive regulation of extrathymic T cell differentiation Any process that activates or increases the frequency, rate or extent of extrathymic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of extrathymic T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0033082 biolink:NamedThing regulation of extrathymic T cell differentiation Any process that modulates the frequency, rate or extent of extrathymic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of extrathymic T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050850 biolink:NamedThing positive regulation of calcium-mediated signaling Any process that activates or increases the frequency, rate or extent of calcium-mediated signaling. tmpzr1t_l9r_go_relaxed.owl up regulation of calcium-mediated signaling|positive regulation of calcium-mediated signalling|up-regulation of calcium-mediated signaling|upregulation of calcium-mediated signaling|stimulation of calcium-mediated signaling|activation of calcium-mediated signaling biological_process owl:Class GO:2000876 biolink:NamedThing positive regulation of glyoxylate cycle Any process that activates or increases the frequency, rate or extent of glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of glyoxylate bypass bf 2011-07-27T01:27:18Z biological_process owl:Class GO:1990930 biolink:NamedThing mRNA N1-methyladenosine dioxygenase activity Catalysis of the oxidative demethylation of N1-methyladenosine RNA, with concomitant decarboxylation of 2-oxoglutarate and releases oxidized methyl group on N1-methyladenosine as formaldehyde. tmpzr1t_l9r_go_relaxed.owl RNA N1-methyladenosine dioxygenase activity|RNA N(1)-methyladenosine dioxygenase activity https://github.com/geneontology/go-ontology/issues/21812 EC:1.14.11.54|RHEA:49516 sp 2016-03-10T08:06:47Z molecular_function owl:Class GO:0031360 biolink:NamedThing intrinsic component of thylakoid membrane The component of the thylakoid membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to thylakoid membrane cellular_component owl:Class GO:0047307 biolink:NamedThing diaminobutyrate-pyruvate transaminase activity Catalysis of the reaction: L-2,4-diaminobutyrate + pyruvate = L-alanine + L-aspartate 4-semialdehyde. tmpzr1t_l9r_go_relaxed.owl L-diaminobutyric acid transaminase activity|diaminobutyrate-pyruvate aminotransferase activity|diaminobutyrate--pyruvate aminotransferase activity|L-2,4-diaminobutanoate:pyruvate aminotransferase activity EC:2.6.1.46|MetaCyc:2.6.1.46-RXN|RHEA:12380|KEGG_REACTION:R02293 molecular_function owl:Class GO:0090463 biolink:NamedThing lysine homeostasis Any process involved in the maintenance of an internal steady state of lysine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0080144 biolink:NamedThing amino acid homeostasis Any process involved in the maintenance of an internal steady state of amino acid within an organism or cell. tmpzr1t_l9r_go_relaxed.owl dhl 2010-01-27T04:47:27Z biological_process owl:Class GO:0018316 biolink:NamedThing peptide cross-linking via L-cystine The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain. tmpzr1t_l9r_go_relaxed.owl RESID:AA0025 biological_process owl:Class GO:1903386 biolink:NamedThing negative regulation of homophilic cell adhesion Any process that stops, prevents or reduces the frequency, rate or extent of homophilic cell adhesion. tmpzr1t_l9r_go_relaxed.owl downregulation of homophilic cell adhesion|down-regulation of homophilic cell adhesion|inhibition of homophilic cell adhesion|down regulation of homophilic cell adhesion als 2014-08-27T09:57:38Z biological_process owl:Class GO:0031080 biolink:NamedThing nuclear pore outer ring A subcomplex of the nuclear pore complex (NPC) that forms the outer rings of the core scaffold, a lattice-like structure that gives the NPC its shape and strength. In S. cerevisiae, the two outer rings each contain multiple copies of the following proteins: Nup133p, Nup120p, Nup145Cp, Nup85p, Nup84p, Seh1p, and Sec13p. In vertebrates, the two outer rings each contain multiple copies of the following proteins: Nup133, Nup160, Nup96, Nup75, Nup107, Seh1, Sec13, Nup43, Nup37, and ALADIN. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometimes referred to as the Nup84 complex (S. cerevisiae) or the Nup107-160 complex (vertebrates). tmpzr1t_l9r_go_relaxed.owl Nup84 complex|Nup107-120 complex|Nup107-160 complex cellular_component owl:Class GO:0009337 biolink:NamedThing sulfite reductase complex (NADPH) A multisubunit iron flavoprotein, which in yeast is composed of 2 alpha and 2 beta subunits. Catalyzes the reduction of sulfite to sulfide. tmpzr1t_l9r_go_relaxed.owl sulphite reductase complex (NADPH) See also the molecular function term 'sulfite reductase (NADPH) activity ; GO:0004783'. cellular_component owl:Class GO:0019620 biolink:NamedThing aerobic benzoate metabolic process The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid) that occur in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic benzoate metabolism biological_process owl:Class GO:0018874 biolink:NamedThing benzoate metabolic process The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid. tmpzr1t_l9r_go_relaxed.owl benzoate metabolism UM-BBD_pathwayID:benz2|MetaCyc:P321-PWY biological_process owl:Class GO:1900214 biolink:NamedThing regulation of apoptotic process involved in metanephric collecting duct development Any process that modulates the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development. tmpzr1t_l9r_go_relaxed.owl regulation of apoptotic program of metanephric collecting duct development|regulation of apoptotic cell death of metanephric collecting duct development|regulation of apoptotic process of metanephric collecting duct development|regulation of signaling (initiator) caspase activity of metanephric collecting duct development|regulation of type I programmed cell death of metanephric collecting duct development|regulation of apoptotic programmed cell death of metanephric collecting duct development|regulation of programmed cell death by apoptosis of metanephric collecting duct development|regulation of apoptosis of metanephric collecting duct development yaf 2012-03-22T10:53:21Z biological_process owl:Class GO:1904371 biolink:NamedThing negative regulation of protein localization to actin cortical patch Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to actin cortical patch. tmpzr1t_l9r_go_relaxed.owl downregulation of protein localisation to actin cortical patch|down-regulation of protein localisation to actin cortical patch|inhibition of protein localisation to actin cortical patch|down regulation of protein localization to actin cortical patch|down-regulation of protein localization to actin cortical patch|inhibition of protein localization to actin cortical patch|negative regulation of protein localisation to actin cortical patch|downregulation of protein localization to actin cortical patch|down regulation of protein localisation to actin cortical patch sl 2015-06-18T22:23:37Z biological_process owl:Class GO:1904777 biolink:NamedThing negative regulation of protein localization to cell cortex Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell cortex. tmpzr1t_l9r_go_relaxed.owl inhibition of protein localisation to cell cortex|downregulation of protein localization to cell cortex|down-regulation of protein localization to cell cortex|down regulation of protein localisation to cell cortex|downregulation of protein localisation to cell cortex|inhibition of protein localization to cell cortex|down-regulation of protein localisation to cell cortex|negative regulation of protein localisation to cell cortex|down regulation of protein localization to cell cortex An example is cye-1 in C. elegans, UniProt ID O01501 in PMID:17115027. es 2015-10-29T16:55:08Z biological_process owl:Class GO:0047711 biolink:NamedThing blasticidin-S deaminase activity Catalysis of the reaction: blasticidin S + H2O = deaminohydroxyblasticidin S + NH3. tmpzr1t_l9r_go_relaxed.owl blasticidin-S aminohydrolase activity RHEA:10148|MetaCyc:BLASTICIDIN-S-DEAMINASE-RXN|EC:3.5.4.23 molecular_function owl:Class GO:0015187 biolink:NamedThing glycine transmembrane transporter activity Enables the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid. tmpzr1t_l9r_go_relaxed.owl glycine transporter activity|glycine betaine/proline porter activity|proline/glycine/betaine:hydrogen/sodium symporter activity molecular_function owl:Class GO:0051769 biolink:NamedThing regulation of nitric-oxide synthase biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme. tmpzr1t_l9r_go_relaxed.owl regulation of nitric-oxide synthase (type 2) biosynthesis|regulation of NO synthase biosynthesis|regulation of nitric-oxide synthase (type II) biosynthetic process|regulation of NOS biosynthesis|regulation of NO synthase biosynthetic process|regulation of nitric-oxide synthase (type II) biosynthesis|regulation of NOS2 synthase biosynthesis|regulation of NOS biosynthetic process|regulation of nitric-oxide synthase (type 2) biosynthetic process|regulation of nitric-oxide synthase 2 biosynthetic process|regulation of NOS2 synthase biosynthetic process GO:0051772 biological_process owl:Class GO:0010556 biolink:NamedThing regulation of macromolecule biosynthetic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097466 biolink:NamedThing ubiquitin-dependent glycoprotein ERAD pathway An ERAD pathway whereby endoplasmic reticulum (ER)-resident glycoproteins are targeted for degradation. Includes differential processing of the glycoprotein sugar chains, retrotranslocation to the cytosol and degradation by the ubiquitin-proteasome pathway. A glycoprotein is a compound in which a carbohydrate component is covalently bound to a protein component. tmpzr1t_l9r_go_relaxed.owl glycoprotein ERAD|ER-associated glycoprotein degradation|misfolded or incompletely synthesized glycoprotein catabolic process|gpERAD pr 2013-02-05T16:37:13Z biological_process owl:Class GO:0006516 biolink:NamedThing glycoprotein catabolic process The chemical reactions and pathways resulting in the breakdown of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycoprotein degradation|glycoprotein catabolism|glycoprotein breakdown biological_process owl:Class GO:1904890 biolink:NamedThing negative regulation of excitatory synapse assembly Any process that stops, prevents or reduces the frequency, rate or extent of excitatory synapse assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of excitatory synapse assembly|inhibition of excitatory synapse assembly|negative regulation of excitatory synapse formation|down regulation of excitatory synapse assembly|inhibition of excitatory synapse formation|down regulation of excitatory synapse formation|down-regulation of excitatory synapse assembly|down-regulation of excitatory synapse formation|downregulation of excitatory synapse formation bf 2016-01-07T14:36:00Z biological_process owl:Class GO:1904578 biolink:NamedThing response to thapsigargin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thapsigargin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T18:06:22Z biological_process owl:Class GO:0018681 biolink:NamedThing deisopropylatrazine monooxygenase activity Catalysis of the reaction: 2 deisopropylatrazine + O2 = 2 acetaldehyde + 2 deisopropyldeethylatrazine. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R05567|EC:1.14.15.- molecular_function owl:Class GO:0099028 biolink:NamedThing anchored component of postynaptic endocytic zone membrane The component of the postynaptic endocytic zone membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030865 biolink:NamedThing cortical cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cortical cytoskeleton organisation|cortical cytoskeleton organization and biogenesis biological_process owl:Class GO:0090144 biolink:NamedThing mitochondrial nucleoid organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial nucleoid. The mitochondrial nucleoid is the region of a mitochondrion to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl mitochondrial nucleoid organisation tb 2009-12-08T02:38:26Z biological_process owl:Class GO:0090143 biolink:NamedThing nucleoid organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleoid. The nucleoid is the region of a bacterial cell, virion, mitochondrion or chloroplast to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl nucleoid organisation tb 2009-12-08T02:35:48Z biological_process owl:Class GO:0034772 biolink:NamedThing histone H4-K20 dimethylation The modification of histone H4 by addition of two methyl groups to lysine at position 20 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H4 K20 dimethylation|histone H4 K20 dimethylation biological_process owl:Class GO:0018027 biolink:NamedThing peptidyl-lysine dimethylation The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0075 biological_process owl:Class GO:0046073 biolink:NamedThing dTMP metabolic process The chemical reactions and pathways involving dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dTMP metabolism biological_process owl:Class GO:0043586 biolink:NamedThing tongue development The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech. tmpzr1t_l9r_go_relaxed.owl lingua development|glossa development biological_process owl:Class GO:0015494 biolink:NamedThing aromatic amino acid:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: aromatic amino acid(out) + H+(out) = aromatic amino acid(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl aromatic amino acid:hydrogen symporter activity molecular_function owl:Class GO:0017134 biolink:NamedThing fibroblast growth factor binding Binding to a fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl FGF 1 binding|FGF 4 binding|FGF binding|fibroblast growth factor 5 binding|fibroblast growth factor 6 binding|fibroblast growth factor 4 binding|fibroblast growth factor 2 binding|FGF 6 binding|fibroblast growth factor 1 binding|FGF 3 binding|fibroblast growth factor 3 binding|FGF 2 binding|FGF 5 binding GO:0048602|GO:0048606|GO:0048603|GO:0048607|GO:0048605|GO:0048604 molecular_function owl:Class GO:0051632 biolink:NamedThing negative regulation of acetylcholine uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of acetylcholine into a cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of acetylcholine uptake|down regulation of acetylcholine uptake|downregulation of acetylcholine uptake|negative regulation of acetylcholine import biological_process owl:Class GO:2000416 biolink:NamedThing regulation of eosinophil migration Any process that modulates the frequency, rate or extent of eosinophil migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:43:23Z biological_process owl:Class GO:0046367 biolink:NamedThing allose catabolic process The chemical reactions and pathways resulting in the breakdown of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3. tmpzr1t_l9r_go_relaxed.owl allose breakdown|allose degradation|allose catabolism biological_process owl:Class GO:0019313 biolink:NamedThing allose metabolic process The chemical reactions and pathways involving allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3. tmpzr1t_l9r_go_relaxed.owl allose metabolism biological_process owl:Class GO:0106158 biolink:NamedThing glycero-3-phosphocholine acyltransferase activity Catalysis of the reaction:acyl-CoA + glycerophosphocholine = CoA + 1-acyl-sn-glycero-3-phosphocholine. tmpzr1t_l9r_go_relaxed.owl glycerophosphocholine O-acyltransferase activity|GPACT activity https://github.com/geneontology/go-ontology/issues/16665 RHEA:58476 hjd 2018-11-26T21:21:03Z molecular_function owl:Class GO:0090031 biolink:NamedThing positive regulation of steroid hormone biosynthetic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:40:32Z biological_process owl:Class GO:0032206 biolink:NamedThing positive regulation of telomere maintenance Any process that activates or increases the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl up-regulation of telomere maintenance|up regulation of telomere maintenance|stimulation of telomere maintenance|activation of telomere maintenance|upregulation of telomere maintenance biological_process owl:Class GO:0010635 biolink:NamedThing regulation of mitochondrial fusion Any process that modulates the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043299 biolink:NamedThing leukocyte degranulation The regulated exocytosis of secretory granules by a leukocyte. tmpzr1t_l9r_go_relaxed.owl leucocyte degranulation|immune cell degranulation|leukocyte granule exocytosis|immune cell granule exocytosis biological_process owl:Class GO:0004605 biolink:NamedThing phosphatidate cytidylyltransferase activity Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol. tmpzr1t_l9r_go_relaxed.owl CTP:phosphatidate cytidylyltransferase activity|CDP-diacylglyceride synthetase activity|CTP-diacylglycerol synthetase activity|phosphatidate cytidyltransferase activity|CTP:1,2-diacylglycerophosphate-cytidyl transferase activity|phosphatidic acid cytidylyltransferase activity|CDP-diglyceride pyrophosphorylase activity|cytidine diphosphoglyceride pyrophosphorylase activity|CDP-diglyceride synthetase activity|CDP-DG|CDP-diglyceride synthase activity|CDP-diglyceride diphosphorylase activity|DAG synthetase activity|CDP diglyceride pyrophosphorylase activity|CDP-diacylglycerol synthase activity MetaCyc:CDPDIGLYSYN-RXN|Reactome:R-HSA-1483121|RHEA:16229|Reactome:R-HSA-1483165|EC:2.7.7.41 molecular_function owl:Class GO:0072271 biolink:NamedThing metanephric short descending thin limb development The process whose specific outcome is the progression of the metanephric short descending thin limb over time, from its formation to the mature structure. The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T03:16:25Z biological_process owl:Class GO:0072063 biolink:NamedThing short descending thin limb development The process whose specific outcome is the progression of the short descending thin limb over time, from its formation to the mature structure. The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:12:39Z biological_process owl:Class GO:0007526 biolink:NamedThing larval somatic muscle development The process whose specific outcome is the progression of the larval somatic muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007525 biolink:NamedThing somatic muscle development The process whose specific outcome is the progression of the somatic muscle over time, from its formation to the mature structure. Somatic muscles are striated muscle structures that connect to the exoskeleton or cuticle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010820 biolink:NamedThing positive regulation of T cell chemotaxis Any process that increases the rate, frequency or extent of T cell chemotaxis. T cell chemotaxis is the directed movement of a T cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900861 biolink:NamedThing regulation of cordyol C biosynthetic process Any process that modulates the frequency, rate or extent of cordyol C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl di 2012-06-07T01:56:16Z biological_process owl:Class GO:0070387 biolink:NamedThing procollagen-proline 4-dioxygenase complex, alpha(II) type A procollagen-proline 4-dioxygenase complex that contains alpha subunits of the type II isoform; its activity is inhibited by poly(L-proline) only at high concentrations. tmpzr1t_l9r_go_relaxed.owl procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, alpha(II) type|prolyl 4-hydroxylase complex (alpha(II)-type) cellular_component owl:Class GO:0016222 biolink:NamedThing procollagen-proline 4-dioxygenase complex A protein complex that catalyzes the formation of procollagen trans-4-hydroxy-L-proline and succinate from procollagen L-proline and 2-oxoglutarate, requiring Fe2+ and ascorbate. Contains two alpha subunits that contribute to most parts of the catalytic sites, and two beta subunits that are identical to protein-disulfide isomerase. tmpzr1t_l9r_go_relaxed.owl procollagen-proline, 2-oxoglutarate-4-dioxygenase complex|prolyl 4-hydroxylase complex cellular_component owl:Class GO:0031553 biolink:NamedThing positive regulation of brain-derived neurotrophic factor-activated receptor activity Any process that activates or increases the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl up regulation of brain-derived neurotrophic factor receptor activity|positive regulation of BDNF receptor activity|upregulation of brain-derived neurotrophic factor receptor activity|stimulation of brain-derived neurotrophic factor receptor activity|positive regulation of brain-derived neurotrophic factor receptor activity|activation of brain-derived neurotrophic factor receptor activity|up-regulation of brain-derived neurotrophic factor receptor activity biological_process owl:Class GO:0039013 biolink:NamedThing pronephric distal tubule morphogenesis The process in which the anatomical structures of a pronephric nephron distal tubule are generated and organized. A pronephric nephron tubule is an epithelial tube that is part of the pronephros. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:58:03Z biological_process owl:Class GO:0039008 biolink:NamedThing pronephric nephron tubule morphogenesis The process in which the anatomical structures of a pronephric nephron tubule are generated and organized from an epithelium. A pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:45:55Z biological_process owl:Class GO:0000213 biolink:NamedThing tRNA-intron endonuclease activity Catalysis of the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron. tmpzr1t_l9r_go_relaxed.owl transfer ribonucleate intron endoribonuclease activity|transfer splicing endonuclease activity|tRNATRPintron endonuclease activity|tRNA-splicing endonuclease activity|splicing endonuclease activity|tRNA splicing endonuclease activity|tRNA-intron endoribonuclease activity EC:3.1.27.9|MetaCyc:3.1.27.9-RXN molecular_function owl:Class GO:0080175 biolink:NamedThing phragmoplast microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. tmpzr1t_l9r_go_relaxed.owl phragmoplast microtubule organisation|phragmoplast microtubule cytoskeleton organization dhl 2011-04-28T03:54:11Z biological_process owl:Class GO:0045988 biolink:NamedThing negative regulation of striated muscle contraction Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle contraction. tmpzr1t_l9r_go_relaxed.owl inhibition of striated muscle contraction|downregulation of striated muscle contraction|down regulation of striated muscle contraction|down-regulation of striated muscle contraction biological_process owl:Class GO:0006942 biolink:NamedThing regulation of striated muscle contraction Any process that modulates the frequency, rate or extent of striated muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070774 biolink:NamedThing phytoceramidase activity Catalysis of the reaction: a phytoceramide + H2O = a fatty acid + phytosphingosine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-428262|KEGG_REACTION:R06528|MetaCyc:CERAMIDASE-YEAST-RXN mah 2009-07-02T10:52:42Z molecular_function owl:Class GO:0035191 biolink:NamedThing nuclear axial expansion The stepwise asymmetric spreading out of nuclei internally along the anterior-posterior axis of the developing insect embryo during mitotic cycles 4 to 6. This movement leads to the distribution of nuclei in a hollow ellipsoid underlying the cortex. tmpzr1t_l9r_go_relaxed.owl nuclear distribution along anterior-posterior axis|nucleus distribution along anterior-posterior axis biological_process owl:Class GO:0035190 biolink:NamedThing syncytial nuclear migration The directed movement of nuclei within the syncytial embryo of insects. These precise temporal and spatial patterns of nuclear movement are coordinated with mitotic divisons and are required during blastoderm formation to reposition dividing nuclei from the interior of the syncytial embryo to the cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048302 biolink:NamedThing regulation of isotype switching to IgG isotypes Any process that modulates the frequency, rate or extent of isotype switching to IgG isotypes. tmpzr1t_l9r_go_relaxed.owl regulation of class switching to IgG isotypes|regulation of class switch recombination to IgG isotypes|regulation of isotype switch recombination to IgG isotypes biological_process owl:Class GO:0000337 biolink:NamedThing regulation of transposition, DNA-mediated Any process that modulates the frequency, rate or extent of DNA transposition, the process of transposing (moving to a different location) a segment of a chromosome or a piece of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl regulation of DNA transposition biological_process owl:Class GO:0010044 biolink:NamedThing response to aluminum ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to aluminum|response to aluminium ion biological_process owl:Class GO:0140280 biolink:NamedThing negative regulation of mitotic division septum assembly Any process that stops, prevents or reduces the frequency, rate or extent of mitotic division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of septin assembly and septum formation involved in mitotic cell cycle|downregulation of division septum formation involved in mitotic cell cycle|negative regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|down-regulation of division septum formation involved in mitotic cell cycle|negative regulation of division septum formation involved in mitotic cell cycle|down regulation of division septum formation involved in mitotic cell cycle|negative regulation of formation of division septum involved in mitotic cell cycle|down-regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|downregulation of formation of division septum involved in mitotic cell cycle|inhibition of mitotic division septum assembly|down-regulation of mitotic division septum assembly|inhibition of septin assembly and septum biosynthesis involved in mitotic cell cycle|down-regulation of formation of division septum involved in mitotic cell cycle|inhibition of division septum formation involved in mitotic cell cycle|negative regulation of septin assembly and septum formation involved in mitotic cell cycle|inhibition of septin assembly and septum formation involved in mitotic cell cycle|downregulation of mitotic division septum assembly|down regulation of mitotic division septum assembly|down regulation of septin assembly and septum formation involved in mitotic cell cycle|inhibition of formation of division septum involved in mitotic cell cycle|down regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle|down regulation of formation of division septum involved in mitotic cell cycle|downregulation of septin assembly and septum formation involved in mitotic cell cycle|downregulation of septin assembly and septum biosynthesis involved in mitotic cell cycle pg 2018-10-08T10:03:22Z biological_process owl:Class GO:0002675 biolink:NamedThing positive regulation of acute inflammatory response Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl activation of acute inflammatory response|up regulation of acute inflammatory response|stimulation of acute inflammatory response|up-regulation of acute inflammatory response|upregulation of acute inflammatory response biological_process owl:Class GO:0001998 biolink:NamedThing angiotensin-mediated vasoconstriction involved in regulation of systemic arterial blood pressure The decrease in blood vessel diameter as a result of the release of angiotensin into the blood stream. tmpzr1t_l9r_go_relaxed.owl angiotensin mediated vasoconstriction during control of blood pressure|angiotensin mediated vasoconstriction during blood pressure control|angiotensin mediated vasoconstriction during blood pressure regulation|angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure biological_process owl:Class GO:0110043 biolink:NamedThing positive regulation of pharynx morphogenesis Any process that activates or increases the frequency, rate or extent of pharynx morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T21:09:48Z biological_process owl:Class GO:0110041 biolink:NamedThing regulation of pharynx morphogenesis Any process that modulates the frequency, rate or extent of pharynx morphogenesis, the process in which the anatomical structure of the pharynx is generated and organized. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T21:00:20Z biological_process owl:Class GO:0009547 biolink:NamedThing plastid ribosome A ribosome contained within a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000313 biolink:NamedThing organellar ribosome A ribosome contained within a subcellular membrane-bounded organelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102096 biolink:NamedThing decaprenyl-N-acetyl-alpha-D-glucosaminyl-pyrophosphate:dTDP-alpha-L-rhamnose rhamnosyltransferase activity Catalysis of the reaction: dTDP-6-deoxy-beta-L-mannose + N-acetyl-alpha-D-glucosaminyl-diphospho-trans,octacis-decaprenol <=> dTDP(3-) + alpha-L-Rhap-(1->3)-alpha-D-GlcpNAc-1-diphospho-trans,octacis-decaprenol + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.289|RHEA:34487|MetaCyc:RXN-11070 molecular_function owl:Class GO:0039621 biolink:NamedThing T=13 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:260 bf 2012-07-18T02:18:59Z cellular_component owl:Class GO:0098045 biolink:NamedThing virus baseplate assembly The aggregation, arrangement and bonding together of a set of components to form a virus baseplate. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-25T14:50:32Z biological_process owl:Class GO:2000590 biolink:NamedThing negative regulation of metanephric mesenchymal cell migration Any process that stops, prevents or reduces the frequency, rate or extent of metanephric mesenchymal cell migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of metanephric mesenchyme chemotaxis bf 2011-04-07T03:29:49Z biological_process owl:Class GO:1905417 biolink:NamedThing negative regulation of amoeboid sperm motility Any process that stops, prevents or reduces the frequency, rate or extent of amoeboid sperm motility. tmpzr1t_l9r_go_relaxed.owl down regulation of ameboid sperm motility|inhibition of ameboid sperm movement|down-regulation of amoeboid sperm movement|negative regulation of ameboid sperm motility|negative regulation of ameboid sperm movement|inhibition of amoeboid sperm movement|inhibition of amoeboid sperm motility|negative regulation of amoeboid sperm movement|downregulation of amoeboid sperm motility|down regulation of ameboid sperm movement|downregulation of amoeboid sperm movement|inhibition of ameboid sperm motility|down regulation of amoeboid sperm motility|down-regulation of ameboid sperm motility|down-regulation of amoeboid sperm motility|downregulation of ameboid sperm movement|downregulation of ameboid sperm motility|down regulation of amoeboid sperm movement|down-regulation of ameboid sperm movement pr 2016-09-01T11:28:55Z biological_process owl:Class GO:2000146 biolink:NamedThing negative regulation of cell motility Any process that stops, prevents, or reduces the frequency, rate or extent of cell motility. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell locomotion|negative regulation of cell movement|negative regulation of movement of a cell mah 2010-10-01T09:41:26Z biological_process owl:Class GO:1990458 biolink:NamedThing lipooligosaccharide binding Binding to lipooligosaccharide. Lipooligosaccharides (LOSs) are the major glycolipids expressed on mucosal Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl endotoxin binding|LOS binding ChEBI distinguishes an oligosaccharide from a polysaccharide as the latter being anything of length 10 or greater. hjd 2014-08-15T19:58:08Z molecular_function owl:Class GO:0061315 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of cardiac muscle cell proliferation The canonical Wnt signaling pathway that contributes to an expansion of the population of cardiac muscle cells. tmpzr1t_l9r_go_relaxed.owl canonical Wnt-activated signaling pathway involved in positive regulation of cardiac muscle cell proliferation|canonical Wnt receptor signalling pathway involved in positive regulation of cardiac muscle cell proliferation|canonical Wnt receptor signaling pathway involved in positive regulation of cardiac muscle cell proliferation dph 2010-09-24T08:53:58Z biological_process owl:Class GO:1902874 biolink:NamedThing positive regulation of horizontal cell localization Any process that activates or increases the frequency, rate or extent of horizontal cell localization. tmpzr1t_l9r_go_relaxed.owl upregulation of horizontal cell localization|positive regulation of horizontal cell positioning|up-regulation of horizontal cell localization|positive regulation of retinal horizontal cell positioning|upregulation of horizontal cell localisation|upregulation of laminar positioning of retinal horizontal cell|upregulation of horizontal cell positioning|activation of laminar positioning of retinal horizontal cell|activation of horizontal cell positioning|up-regulation of laminar positioning of retinal horizontal cell|up regulation of horizontal cell localisation|up-regulation of retinal horizontal cell positioning|activation of horizontal cell localisation|up-regulation of horizontal cell localisation|positive regulation of laminar positioning of retinal horizontal cell|activation of retinal horizontal cell positioning|up regulation of laminar positioning of retinal horizontal cell|up regulation of horizontal cell localization|up regulation of retinal horizontal cell positioning|up regulation of horizontal cell positioning|positive regulation of horizontal cell localisation|up-regulation of horizontal cell positioning|upregulation of retinal horizontal cell positioning|activation of horizontal cell localization mr 2014-04-03T15:25:09Z biological_process owl:Class GO:1902872 biolink:NamedThing regulation of horizontal cell localization Any process that modulates the frequency, rate or extent of horizontal cell localization. tmpzr1t_l9r_go_relaxed.owl regulation of horizontal cell localisation|regulation of retinal horizontal cell positioning|regulation of laminar positioning of retinal horizontal cell|regulation of horizontal cell positioning mr 2014-04-03T15:24:58Z biological_process owl:Class GO:1902173 biolink:NamedThing negative regulation of keratinocyte apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of keratinocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of keratinocyte apoptosis|down regulation of keratinocyte apoptotic process|downregulation of keratinocyte apoptotic process|down regulation of keratinocyte apoptosis|negative regulation of keratinocyte apoptosis|inhibition of keratinocyte apoptotic process|inhibition of keratinocyte apoptosis|downregulation of keratinocyte apoptosis|down-regulation of keratinocyte apoptotic process rl 2013-05-29T14:36:15Z biological_process owl:Class GO:1902172 biolink:NamedThing regulation of keratinocyte apoptotic process Any process that modulates the frequency, rate or extent of keratinocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of keratinocyte apoptosis rl 2013-05-29T14:36:11Z biological_process owl:Class GO:0034112 biolink:NamedThing positive regulation of homotypic cell-cell adhesion Any process that activates or increases the frequency, rate, or extent of homotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034289 biolink:NamedThing detection of maltose stimulus The series of events in which a maltose stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of maltose stimulus biological_process owl:Class GO:0034288 biolink:NamedThing detection of disaccharide stimulus The series of events in which a stimulus from a disaccharide is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of disaccharide stimulus biological_process owl:Class GO:0047079 biolink:NamedThing deoxyuridine 1'-dioxygenase activity Catalysis of the reaction: 2'-deoxyuridine + 2-oxoglutarate + O(2) = 2-deoxy-D-ribono-1,4-lactone + CO(2) + succinate + uracil. tmpzr1t_l9r_go_relaxed.owl pyrimidine-deoxynucleoside,2-oxoglutarate 1'-dioxygenase activity|2'-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (1'-hydroxylating)|pyrimidine-deoxynucleoside 1'-dioxygenase activity RHEA:23316|EC:1.14.11.10|KEGG_REACTION:R02486|MetaCyc:1.14.11.10-RXN molecular_function owl:Class GO:0045986 biolink:NamedThing negative regulation of smooth muscle contraction Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl smooth muscle relaxation|down-regulation of smooth muscle contraction|down regulation of smooth muscle contraction|downregulation of smooth muscle contraction|inhibition of smooth muscle contraction biological_process owl:Class GO:0045932 biolink:NamedThing negative regulation of muscle contraction Any process that stops, prevents, or reduces the frequency, rate or extent of muscle contraction. tmpzr1t_l9r_go_relaxed.owl inhibition of muscle contraction|downregulation of muscle contraction|down-regulation of muscle contraction|down regulation of muscle contraction biological_process owl:Class GO:0016127 biolink:NamedThing sterol catabolic process The chemical reactions and pathways resulting in the breakdown of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol catabolism|sterol breakdown|sterol degradation biological_process owl:Class GO:0016125 biolink:NamedThing sterol metabolic process The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol metabolism biological_process owl:Class GO:0043772 biolink:NamedThing acyl-phosphate glycerol-3-phosphate acyltransferase activity Catalysis of the reaction: acyl phosphate + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + orthophosphate. tmpzr1t_l9r_go_relaxed.owl acyl-phosphate:glycerol-3-phosphate acyltransferase activity|acylphosphate:glycerol-3-phosphate acyltransferase activity|acylphosphate glycerol-3-phosphate acyltransferase activity molecular_function owl:Class GO:0002688 biolink:NamedThing regulation of leukocyte chemotaxis Any process that modulates the frequency, rate, or extent of leukocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl regulation of leucocyte chemotaxis|regulation of immune cell chemotaxis biological_process owl:Class GO:0009809 biolink:NamedThing lignin biosynthetic process The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers. tmpzr1t_l9r_go_relaxed.owl lignin anabolism|lignin biosynthesis|lignin synthesis|lignin formation MetaCyc:PWY-361 biological_process owl:Class GO:1904987 biolink:NamedThing regulation of endothelial cell activation Any process that modulates the frequency, rate or extent of endothelial cell activation. tmpzr1t_l9r_go_relaxed.owl bc 2016-02-29T16:16:09Z biological_process owl:Class GO:0004456 biolink:NamedThing phosphogluconate dehydratase activity Catalysis of the reaction: 6-phospho-D-gluconate = 2-dehydro-3-deoxy-6-phospho-D-gluconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl gluconate 6-phosphate dehydratase activity|6-phosphogluconate dehydratase activity|6-phospho-D-gluconate hydro-lyase activity|6-phospho-D-gluconate hydro-lyase (2-dehydro-3-deoxy-6-phospho-D-gluconate-forming)|gluconate-6-phosphate dehydratase activity|6-phosphogluconate dehydrase activity|6-phosphogluconic dehydrase activity RHEA:17277|MetaCyc:PGLUCONDEHYDRAT-RXN|EC:4.2.1.12|KEGG_REACTION:R02036 molecular_function owl:Class GO:0033157 biolink:NamedThing regulation of intracellular protein transport Any process that modulates the frequency, rate or extent of the directed movement of proteins within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008817 biolink:NamedThing cob(I)yrinic acid a,c-diamide adenosyltransferase activity Catalysis of the reaction: ATP + cob(I)alamin + H2O = phosphate + diphosphate + adenosylcobalamin. tmpzr1t_l9r_go_relaxed.owl vitamin B12s adenosyltransferase activity|ATP:cob(I)alamin cobeta-adenosyltransferase activity|aquacob(I)alamin adenosyltransferase activity|ATP:corrinoid adenosyltransferase activity|cob(I)alamin adenosyltransferase activity|aquocob(I)alamin vitamin B12s adenosyltransferase activity|ATP:cob(I)yrinic acid-a,c-diamide cobeta-adenosyltransferase activity|ATP:cob(I)alamin Co-beta-adenosyltransferase activity|CobA MetaCyc:COBALADENOSYLTRANS-RXN|RHEA:14725|Reactome:R-HSA-3159253|EC:2.5.1.17|Reactome:R-HSA-3322125 molecular_function owl:Class GO:0042307 biolink:NamedThing positive regulation of protein import into nucleus Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein import into nucleus|activation of protein import into nucleus|positive regulation of protein transport from cytoplasm to nucleus|positive regulation of protein-nucleus import|upregulation of protein import into nucleus|up regulation of protein import into nucleus|stimulation of protein import into nucleus|positive regulation of protein import into cell nucleus biological_process owl:Class GO:0070169 biolink:NamedThing positive regulation of biomineral tissue development Any process that activates or increases the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036023 biolink:NamedThing embryonic skeletal limb joint morphogenesis The process, occurring in the embryo, in which the anatomical structures of a skeletal limb joint are generated and organized. A skeletal limb joint is the connecting structure between the bones of a limb. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-13T04:57:39Z biological_process owl:Class GO:0036022 biolink:NamedThing limb joint morphogenesis The process in which the anatomical structures of a limb joint are generated and organized. A limb joint is a flexible region that separates the rigid sections of a limb to allow movement in a controlled manner. tmpzr1t_l9r_go_relaxed.owl leg joint morphogenesis|knee morphogenesis bf 2011-10-13T04:52:59Z biological_process owl:Class GO:1900588 biolink:NamedThing violaceol I metabolic process The chemical reactions and pathways involving violaceol I. tmpzr1t_l9r_go_relaxed.owl violaceol I metabolism di 2012-05-15T06:50:48Z biological_process owl:Class GO:0061687 biolink:NamedThing detoxification of inorganic compound Any process that reduces or removes the toxicity of inorganic compounds. These include transport of such compounds away from sensitive areas and to compartments or complexes whose purpose is sequestration of inorganic compounds. tmpzr1t_l9r_go_relaxed.owl dph 2015-03-09T09:16:23Z biological_process owl:Class GO:0098836 biolink:NamedThing cytoskeleton of dendritic spine The portion of the cytoskeleton that lies within a dendritic spine. The actin component of this cytoskeleton is involved in spine head remodelling in response to postsynaptic signalling. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006217 biolink:NamedThing deoxycytidine catabolic process The chemical reactions and pathways resulting in the breakdown of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxycytidine catabolism|deoxycytidine degradation|deoxycytidine breakdown biological_process owl:Class GO:0046092 biolink:NamedThing deoxycytidine metabolic process The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxycytidine metabolism biological_process owl:Class GO:0004850 biolink:NamedThing uridine phosphorylase activity Catalysis of the reaction: uridine + phosphate = uracil + alpha-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl pyrimidine phosphorylase activity|UrdPase activity|uridine:phosphate alpha-D-ribosyltransferase activity|UPase activity|UPH Reactome:R-HSA-74376|MetaCyc:URPHOS-RXN|RHEA:24388|Reactome:R-HSA-74372|EC:2.4.2.3 molecular_function owl:Class GO:0017102 biolink:NamedThing methionyl glutamyl tRNA synthetase complex A complex consisting of methionyl- and glutamyl-tRNA synthetases. The tRNA synthetases present in the complex bind to their cognate tRNAs more efficiently than they do as monomers. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010391 biolink:NamedThing glucomannan metabolic process The chemical reactions and pathways involving glucomannan, a polysaccharide composed of D-glucose and D-mannose. The mannose units form the backbone structure (a linear main chain) with the D-glucose as single side-units. tmpzr1t_l9r_go_relaxed.owl glucomannan metabolism biological_process owl:Class GO:0006080 biolink:NamedThing substituted mannan metabolic process The chemical reactions and pathways involving a mannan backbone composed of D-mannose unites, substituted with D-glucose and/or D-galactose units. tmpzr1t_l9r_go_relaxed.owl substituted mannan metabolism biological_process owl:Class GO:0102259 biolink:NamedThing 1,2-diacylglycerol acylhydrolase activity Catalysis of the reaction: H2O + a 1,2-diacyl-sn-glycerol = a monoglyceride + a fatty acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12434 molecular_function owl:Class GO:0070130 biolink:NamedThing negative regulation of mitochondrial translation Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial protein synthesis|negative regulation of mitochondrial protein biosynthesis|negative regulation of mitochondrial protein formation|negative regulation of mitochondrial protein anabolism biological_process owl:Class GO:0032528 biolink:NamedThing microvillus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell. tmpzr1t_l9r_go_relaxed.owl microvillus organisation|microvillus organization and biogenesis biological_process owl:Class GO:0120036 biolink:NamedThing plasma membrane bounded cell projection organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasma membrane bounded prolongation or process extending from a cell, e.g. a cilium or axon. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 krc 2017-04-26T16:07:02Z biological_process owl:Class GO:1903016 biolink:NamedThing negative regulation of exo-alpha-sialidase activity Any process that stops, prevents or reduces the frequency, rate or extent of exo-alpha-sialidase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of neuraminidase activity|down regulation of acetylneuraminyl hydrolase activity|downregulation of N-acylneuraminate glycohydrolase activity|down-regulation of acetylneuraminidase activity|inhibition of neuraminidase activity|downregulation of sialidase activity|down regulation of acetylneuraminidase activity|inhibition of acetylneuraminyl hydrolase activity|inhibition of exo-alpha-sialidase activity|down-regulation of exo-alpha-sialidase activity|inhibition of N-acylneuraminate glycohydrolase activity|negative regulation of alpha-neuraminidase activity|inhibition of sialidase activity|down-regulation of sialidase activity|downregulation of acetylneuraminidase activity|downregulation of acetylneuraminyl hydrolase activity|negative regulation of N-acylneuraminate glycohydrolase activity|down regulation of alpha-neuraminidase activity|downregulation of neuraminidase activity|down regulation of N-acylneuraminate glycohydrolase activity|negative regulation of neuraminidase activity|down regulation of sialidase activity|negative regulation of sialidase activity|down-regulation of N-acylneuraminate glycohydrolase activity|down-regulation of alpha-neuraminidase activity|negative regulation of acetylneuraminyl hydrolase activity|down regulation of exo-alpha-sialidase activity|down-regulation of acetylneuraminyl hydrolase activity|downregulation of exo-alpha-sialidase activity|inhibition of acetylneuraminidase activity|inhibition of alpha-neuraminidase activity|down-regulation of neuraminidase activity|downregulation of alpha-neuraminidase activity|negative regulation of acetylneuraminidase activity human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) demonstrated in Figure 4A PMID:23544079, (IDA) rl 2014-05-14T18:15:17Z biological_process owl:Class GO:1903015 biolink:NamedThing regulation of exo-alpha-sialidase activity Any process that modulates the frequency, rate or extent of exo-alpha-sialidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of acetylneuraminyl hydrolase activity|regulation of N-acylneuraminate glycohydrolase activity|regulation of sialidase activity|regulation of neuraminidase activity|regulation of alpha-neuraminidase activity|regulation of acetylneuraminidase activity human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) demonstrated in Figure 4A PMID:23544079, (IDA) rl 2014-05-14T18:15:11Z biological_process owl:Class GO:0033361 biolink:NamedThing lysine biosynthetic process via diaminopimelate, dehydrogenase pathway The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in a single enzymatic step. tmpzr1t_l9r_go_relaxed.owl lysine formation via diaminopimelate, dehydrogenase pathway|lysine anabolism via diaminopimelate, dehydrogenase pathway|lysine synthesis via diaminopimelate, dehydrogenase pathway|lysine biosynthesis via diaminopimelic acid, dehydrogenase pathway MetaCyc:PWY-2942 biological_process owl:Class GO:1900345 biolink:NamedThing regulation of methane biosynthetic process from methanethiol Any process that modulates the frequency, rate or extent of methane biosynthetic process from methanethiol. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:09:49Z biological_process owl:Class GO:0042442 biolink:NamedThing melatonin catabolic process The chemical reactions and pathways resulting in the breakdown of melatonin (N-acetyl-5-methoxytryptamine). tmpzr1t_l9r_go_relaxed.owl melatonin catabolism|melatonin breakdown|melatonin degradation GO:0042449 biological_process owl:Class GO:0042447 biolink:NamedThing hormone catabolic process The chemical reactions and pathways resulting in the breakdown of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. tmpzr1t_l9r_go_relaxed.owl hormone catabolism|hormone breakdown|hormone degradation biological_process owl:Class GO:0044543 biolink:NamedThing envenomation resulting in zymogen activation in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with the proteolytic processing of an inactive enzyme to an active form. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-22T11:52:56Z biological_process owl:Class GO:0002851 biolink:NamedThing positive regulation of peripheral T cell tolerance induction Any process that activates or increases the frequency, rate, or extent of peripheral T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl up regulation of peripheral T cell tolerance induction|upregulation of peripheral T cell tolerance induction|activation of peripheral T cell tolerance induction|stimulation of peripheral T cell tolerance induction|up-regulation of peripheral T cell tolerance induction biological_process owl:Class GO:0002849 biolink:NamedThing regulation of peripheral T cell tolerance induction Any process that modulates the frequency, rate, or extent of peripheral T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047037 biolink:NamedThing salutaridine reductase (NADPH) activity Catalysis of the reaction: (7S)-salutaridinol + NADP(+) = H(+) + NADPH + salutaridine. tmpzr1t_l9r_go_relaxed.owl salutaridinol:NADP+ 7-oxidoreductase activity EC:1.1.1.248|KEGG_REACTION:R04697|RHEA:10108|MetaCyc:1.1.1.248-RXN molecular_function owl:Class GO:1901495 biolink:NamedThing negative regulation of cysteine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cysteine metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of cysteine metabolism|down-regulation of cysteine metabolic process|down-regulation of cysteine metabolism|downregulation of cysteine metabolic process|down regulation of cysteine metabolism|downregulation of cysteine metabolism|negative regulation of cysteine metabolism|down regulation of cysteine metabolic process|inhibition of cysteine metabolic process vw 2012-10-16T14:28:47Z biological_process owl:Class GO:1900170 biolink:NamedThing negative regulation of glucocorticoid mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of glucocorticoid mediated signalling|inhibition of glucocorticoid mediated signaling pathway|downregulation of glucocorticoid mediated signaling pathway|down regulation of glucocorticoid mediated signalling|inhibition of glucocorticoid mediated signalling|negative regulation of glucocorticoid mediated signalling|down-regulation of glucocorticoid mediated signalling|down-regulation of glucocorticoid mediated signaling pathway|down regulation of glucocorticoid mediated signaling pathway hjd 2012-03-08T08:33:20Z biological_process owl:Class GO:0070320 biolink:NamedThing inward rectifier potassium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of an inwardly rectifying potassium channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140678 biolink:NamedThing molecular function inhibitor activity A molecular function regulator that inhibits or decreases the activity of its target via non-covalent binding that does not result in covalent modification to the target. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21782 pg 2021-07-07T07:24:32Z molecular_function owl:Class GO:0033201 biolink:NamedThing alpha-1,4-glucan synthase activity Catalysis of the reaction: RDP-glucose + [alpha-D-glucosyl-(1,4)]n = RDP + [alpha-D-glucosyl-(1,4)]n+1, where RDP is ADP or UDP. tmpzr1t_l9r_go_relaxed.owl 1,4-alpha-glucan synthase activity EC:2.4.1.21|RHEA:18189 molecular_function owl:Class GO:0030124 biolink:NamedThing AP-4 adaptor complex An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030119 biolink:NamedThing AP-type membrane coat adaptor complex Any of several heterotetrameric complexes that link clathrin (or another coat-forming molecule, as hypothesized for AP-3 and AP-4) to a membrane surface; they are found on coated pits and coated vesicles, and mediate sorting of cargo proteins into vesicles. Each AP complex contains two large (a beta and one of either an alpha, gamma, delta, or epsilon) subunits (110-130 kDa), a medium (mu) subunit (approximately 50 kDa), and a small (sigma) subunit (15-20 kDa). tmpzr1t_l9r_go_relaxed.owl clathrin adaptor cellular_component owl:Class GO:0015193 biolink:NamedThing L-proline transmembrane transporter activity Enables the transfer of L-proline from one side of a membrane to the other. L-proline is pyrrolidine-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl glycine betaine/proline porter activity|L-proline transporter activity|L-proline permease activity|proline/glycine/betaine:hydrogen/sodium symporter activity Reactome:R-HSA-8870354 GO:0005296 molecular_function owl:Class GO:2000907 biolink:NamedThing negative regulation of glucomannan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of glucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucomannan catabolism tt 2011-07-29T01:13:24Z biological_process owl:Class GO:0060307 biolink:NamedThing regulation of ventricular cardiac muscle cell membrane repolarization Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in a ventricular cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl regulation of ventricular cardiac muscle repolarization|electrocardiogram T wave|ventricular repolarization|regulation of ventricular cardiac muscle cell repolarization|regulation of ventricular cardiomyocyte membrane repolarization biological_process owl:Class GO:0110095 biolink:NamedThing cellular detoxification of aldehyde Any process carried out at the cellular level that reduces or removes the toxicity of an aldehyde. These may include transport of aldehydes away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-16T21:19:20Z biological_process owl:Class GO:1902689 biolink:NamedThing negative regulation of NAD metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of NAD metabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of NAD metabolism|inhibition of NAD (oxidized) metabolism|down regulation of NAD (oxidized) metabolic process|down-regulation of NAD (oxidized) metabolism|negative regulation of NAD (oxidized) metabolism|down-regulation of nicotinamide adenine dinucleotide metabolic process|inhibition of nicotinamide adenine dinucleotide metabolism|down-regulation of oxidized NAD metabolic process|down-regulation of oxidized nicotinamide adenine dinucleotide metabolic process|negative regulation of oxidized nicotinamide adenine dinucleotide metabolism|down regulation of oxidized nicotinamide adenine dinucleotide metabolic process|down-regulation of oxidized nicotinamide adenine dinucleotide metabolism|negative regulation of oxidized NAD metabolic process|down regulation of nicotinamide adenine dinucleotide metabolic process|inhibition of oxidized NAD metabolism|down regulation of NAD metabolic process|inhibition of NAD metabolic process|down regulation of NAD metabolism|inhibition of NAD phosphorylation and dephosphorylation|downregulation of NAD (oxidized) metabolic process|inhibition of nicotinamide adenine dinucleotide metabolic process|inhibition of oxidized NAD metabolic process|down regulation of nicotinamide adenine dinucleotide metabolism|negative regulation of oxidized NAD metabolism|downregulation of oxidized NAD metabolism|negative regulation of oxidized nicotinamide adenine dinucleotide metabolic process|downregulation of NAD (oxidized) metabolism|inhibition of NAD metabolism|down-regulation of oxidized NAD metabolism|down regulation of oxidized NAD metabolic process|down-regulation of nicotinamide adenine dinucleotide metabolism|downregulation of NAD phosphorylation and dephosphorylation|inhibition of oxidized nicotinamide adenine dinucleotide metabolic process|down-regulation of NAD metabolic process|down regulation of oxidized NAD metabolism|downregulation of oxidized NAD metabolic process|downregulation of nicotinamide adenine dinucleotide metabolism|negative regulation of nicotinamide adenine dinucleotide metabolism|negative regulation of NAD (oxidized) metabolic process|down regulation of NAD (oxidized) metabolism|down-regulation of NAD phosphorylation and dephosphorylation|inhibition of oxidized nicotinamide adenine dinucleotide metabolism|down regulation of NAD phosphorylation and dephosphorylation|downregulation of oxidized nicotinamide adenine dinucleotide metabolic process|inhibition of NAD (oxidized) metabolic process|down-regulation of NAD (oxidized) metabolic process|negative regulation of NAD phosphorylation and dephosphorylation|downregulation of oxidized nicotinamide adenine dinucleotide metabolism|downregulation of NAD metabolic process|down regulation of oxidized nicotinamide adenine dinucleotide metabolism|downregulation of nicotinamide adenine dinucleotide metabolic process|negative regulation of NAD metabolism|down-regulation of NAD metabolism|negative regulation of nicotinamide adenine dinucleotide metabolic process di 2014-02-12T18:58:59Z biological_process owl:Class GO:0086002 biolink:NamedThing cardiac muscle cell action potential involved in contraction An action potential that occurs in a cardiac muscle cell and is involved in its contraction. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:45:11Z biological_process owl:Class GO:0007272 biolink:NamedThing ensheathment of neurons The process in which glial cells envelop neuronal cell bodies and/or axons to form an insulating layer. This can take the form of myelinating or non-myelinating ensheathment. tmpzr1t_l9r_go_relaxed.owl ionic insulation of neurons by glial cells biological_process owl:Class GO:0060391 biolink:NamedThing positive regulation of SMAD protein signal transduction Any process that increases the rate, frequency or extent of SMAD protein signal transduction. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl positive regulation of SMAD protein import into nucleus|positive regulation of SMAD protein nuclear translocation biological_process owl:Class GO:0032878 biolink:NamedThing regulation of establishment or maintenance of cell polarity Any process that modulates the frequency, rate or extent of the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008356 biolink:NamedThing asymmetric cell division The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. tmpzr1t_l9r_go_relaxed.owl asymmetrical cytokinesis|asymmetric cytokinesis|asymmetrical cell division Wikipedia:Asymmetric_cell_division biological_process owl:Class GO:2000679 biolink:NamedThing positive regulation of transcription regulatory region DNA binding Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-05-09T03:28:17Z biological_process owl:Class GO:0102662 biolink:NamedThing malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity Catalysis of the reaction: 3-oxopropanoate + coenzyme A(4-) + NAD(1-) <=> acetyl-CoA(4-) + carbon dioxide + NADH(2-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2902|RHEA:22992 molecular_function owl:Class GO:0035403 biolink:NamedThing histone kinase activity (H3-T6 specific) Catalysis of the transfer of a phosphate group to the threonine-6 residue of the N-terminal tail of histone H3. tmpzr1t_l9r_go_relaxed.owl histone threonine kinase activity (H3-T6 specific)|histone-threonine kinase activity (H3-T6 specific) bf 2010-03-24T10:05:39Z molecular_function owl:Class GO:0006537 biolink:NamedThing glutamate biosynthetic process The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl glutamate biosynthetic process, using glutamate synthase (NADPH)|glutamic acid biosynthesis|glutamate biosynthesis, using glutamate synthase (NADPH)|glutamate anabolism|glutamic acid biosynthetic process|glutamate biosynthesis|glutamate synthesis|glutamate formation|glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+)|glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+) biological_process owl:Class GO:1901557 biolink:NamedThing response to fenofibrate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fenofibrate stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2012-11-02T09:46:20Z biological_process owl:Class GO:0031652 biolink:NamedThing positive regulation of heat generation Any process that activates or increases the rate or extent of heat generation. tmpzr1t_l9r_go_relaxed.owl up regulation of heat generation|stimulation of heat generation|activation of heat generation|upregulation of heat generation|up-regulation of heat generation biological_process owl:Class GO:0097428 biolink:NamedThing protein maturation by iron-sulfur cluster transfer The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-15T09:59:06Z biological_process owl:Class GO:1900849 biolink:NamedThing regulation of pseurotin A biosynthetic process Any process that modulates the frequency, rate or extent of pseurotin A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of Pseurotin synthesis|regulation of pseurotin A formation|regulation of Pseurotin biosynthesis|regulation of Pseurotin formation|regulation of Pseurotin anabolism|regulation of Pseurotin biosynthetic process|regulation of pseurotin A biosynthesis|regulation of pseurotin A anabolism|regulation of pseurotin A synthesis di 2012-06-07T09:45:27Z biological_process owl:Class GO:0042821 biolink:NamedThing pyridoxal biosynthetic process The chemical reactions and pathways resulting in the formation of 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. tmpzr1t_l9r_go_relaxed.owl pyridoxal anabolism|pyridoxal formation|pyridoxal biosynthesis|pyridoxal synthesis biological_process owl:Class GO:0060960 biolink:NamedThing cardiac neuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron of the heart. tmpzr1t_l9r_go_relaxed.owl heart neuron fate commitment dph 2009-09-30T10:23:47Z biological_process owl:Class GO:0120070 biolink:NamedThing negative regulation of stomach fundus smooth muscle contraction Any process that decreases the frequency, rate or extent of any stomach fundus smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:27:40Z biological_process owl:Class GO:0030954 biolink:NamedThing astral microtubule nucleation The 'de novo' formation of an astral microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070241 biolink:NamedThing positive regulation of activated T cell autonomous cell death Any process that activates or increases the frequency, rate or extent of activated T cell autonomous cell death. tmpzr1t_l9r_go_relaxed.owl activation of activated T cell autonomous cell death|positive regulation of activated T lymphocyte autonomous cell death|up regulation of activated T cell autonomous cell death|upregulation of activated T cell autonomous cell death|positive regulation of activated T-cell autonomous cell death|up-regulation of activated T cell autonomous cell death|positive regulation of activated T-lymphocyte autonomous cell death|positive regulation of activated cell autonomous cell death|positive regulation of activated T cell apoptosis|positive regulation of ACAD|stimulation of activated T cell autonomous cell death biological_process owl:Class GO:0071321 biolink:NamedThing cellular response to cGMP Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cGMP (cyclic GMP, guanosine 3',5'-cyclophosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to guanosine 3',5'-cyclophosphate|cellular response to 3',5'-cGMP|cellular response to 3',5' cGMP|cellular response to cyclic GMP mah 2009-12-10T05:12:58Z biological_process owl:Class GO:0061451 biolink:NamedThing retrotrapezoid nucleus development The progression of the retrotrapezoid nucleus (RTN) over time from it's initial formation to its mature state. The retrotrapezoid nucleus is a group of neurons in the rostral medulla, which are responsible regulating respiration. tmpzr1t_l9r_go_relaxed.owl dph 2012-07-19T12:38:30Z biological_process owl:Class GO:0106360 biolink:NamedThing 2-hydroxy-3-methylhexadecanoyl-CoA lyase activity Catalysis of the reaction: 2-hydroxy-3-methylhexadecanoyl-CoA = 2-methylpentadecanal + formyl-CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:25379 hjd 2021-02-03T16:14:49Z molecular_function owl:Class GO:0106359 biolink:NamedThing 2-hydroxyacyl-CoA lyase activity Catalysis of the reaction: A 2-hydroxyacyl-CoA = formyl-CoA + a propanol. tmpzr1t_l9r_go_relaxed.owl hjd 2021-02-03T16:12:00Z molecular_function owl:Class GO:0031067 biolink:NamedThing negative regulation of histone deacetylation at centromere Any process that stops, prevents, or reduces the frequency, rate or extent of the removal of acetyl groups to histones in centromeric DNA. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone deacetylation at centromere|inhibition of histone deacetylation at centromere|downregulation of histone deacetylation at centromere|down regulation of histone deacetylation at centromere biological_process owl:Class GO:0031066 biolink:NamedThing regulation of histone deacetylation at centromere Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones in centromeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097316 biolink:NamedThing cellular response to N-acetyl-D-glucosamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an N-acetyl-D-glucosamine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-30T04:01:02Z biological_process owl:Class GO:0097315 biolink:NamedThing response to N-acetyl-D-glucosamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an N-acetyl-D-glucosamine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-30T03:58:54Z biological_process owl:Class GO:0046294 biolink:NamedThing formaldehyde catabolic process The chemical reactions and pathways resulting in the breakdown of formaldehyde (methanal, H2C=O), the simplest aldehyde. tmpzr1t_l9r_go_relaxed.owl formaldehyde breakdown|methanal catabolism|methanal catabolic process|formaldehyde catabolism|formaldehyde degradation biological_process owl:Class GO:0046292 biolink:NamedThing formaldehyde metabolic process The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent. tmpzr1t_l9r_go_relaxed.owl methanal metabolism|methanal metabolic process|formaldehyde metabolism biological_process owl:Class GO:0060623 biolink:NamedThing regulation of chromosome condensation Any process that modulates the rate, frequency, or extent of chromosome condensation, the progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:12:13Z biological_process owl:Class GO:0061673 biolink:NamedThing mitotic spindle astral microtubule Any of the mitotic spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell. tmpzr1t_l9r_go_relaxed.owl dph 2014-12-08T18:27:20Z cellular_component owl:Class GO:0000235 biolink:NamedThing astral microtubule Any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035943 biolink:NamedThing estrone secretion The regulated release of estrone into the circulatory system. tmpzr1t_l9r_go_relaxed.owl folliculin secretion|3-hydroxy-1,3,5(10)-estratrien-17-one secretion bf 2011-07-25T02:18:40Z biological_process owl:Class GO:1902863 biolink:NamedThing regulation of embryonic camera-type eye development Any process that modulates the frequency, rate or extent of embryonic camera-type eye development. tmpzr1t_l9r_go_relaxed.owl regulation of embryonic eye development mr 2014-04-03T15:24:00Z biological_process owl:Class GO:1903339 biolink:NamedThing negative regulation of cell wall organization or biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular cell wall organization or biogenesis|down-regulation of cell wall organisation or biogenesis|down regulation of cell wall organization or biogenesis at cellular level|down regulation of cell wall organization or biogenesis|downregulation of cell wall organisation or biogenesis|negative regulation of cell wall organization or biogenesis at cellular level|downregulation of cellular cell wall organization or biogenesis|downregulation of cellular cell wall organisation or biogenesis|inhibition of cell wall organisation or biogenesis|inhibition of cellular cell wall organization or biogenesis|negative regulation of cellular cell wall organization or biogenesis|down-regulation of cell wall organization or biogenesis at cellular level|negative regulation of cell wall organisation or biogenesis|inhibition of cell wall organization or biogenesis at cellular level|downregulation of cell wall organization or biogenesis|inhibition of cellular cell wall organisation or biogenesis|down-regulation of cellular cell wall organization or biogenesis|inhibition of cell wall organization or biogenesis|down regulation of cellular cell wall organisation or biogenesis|down-regulation of cellular cell wall organisation or biogenesis|downregulation of cell wall organization or biogenesis at cellular level|down regulation of cell wall organisation or biogenesis|negative regulation of cellular cell wall organisation or biogenesis|down-regulation of cell wall organization or biogenesis vw 2014-08-18T13:20:58Z biological_process owl:Class GO:0047775 biolink:NamedThing citramalate CoA-transferase activity Catalysis of the reaction: acetyl-CoA + citramalate = acetate + (3S)-citramalyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:citramalate CoA-transferase activity MetaCyc:CITRAMALATE-COA-TRANSFERASE-RXN|EC:2.8.3.11|RHEA:17621 molecular_function owl:Class GO:0019457 biolink:NamedThing methionine catabolic process to succinyl-CoA The chemical reactions and pathways resulting in the breakdown of methionine into other compounds, including succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl methionine degradation to succinyl-CoA|methionine breakdown to succinyl-CoA MetaCyc:METHIONINE-DEG1-PWY biological_process owl:Class GO:0006104 biolink:NamedThing succinyl-CoA metabolic process The chemical reactions and pathways involving succinyl-CoA, a compound composed of the monovalent acyl group 3-carboxypropanoyl, derived from succinic acid by loss of one OH group, linked to coenzyme A. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA metabolism biological_process owl:Class GO:0106367 biolink:NamedThing (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor Catalysis of the reaction: a 2'-deoxyribonucleoside 5'-phosphate + dGTP = a 2'-deoxyribonucleoside 5'-diphosphate + dGDP. tmpzr1t_l9r_go_relaxed.owl RHEA:62128 hjd 2021-03-11T20:06:53Z molecular_function owl:Class GO:0010490 biolink:NamedThing UDP-4-keto-rhamnose-4-keto-reductase activity Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH = UDP-rhamnose + NADP+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060411 biolink:NamedThing cardiac septum morphogenesis The process in which the anatomical structure of a cardiac septum is generated and organized. A cardiac septum is a partition that separates parts of the heart. tmpzr1t_l9r_go_relaxed.owl heart septum morphogenesis GO:0003280 biological_process owl:Class GO:0008727 biolink:NamedThing GDP-mannose mannosyl hydrolase activity Catalysis of the reaction: GDP-alpha-D-mannose + H2O = GDP + D-mannose + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:28102|MetaCyc:GDPMANMANHYDRO-RXN molecular_function owl:Class GO:0097069 biolink:NamedThing cellular response to thyroxine stimulus A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroxine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to T4 stimulus pr 2011-06-14T05:06:48Z biological_process owl:Class GO:0007604 biolink:NamedThing phototransduction, UV The sequence of reactions within a cell required to convert absorbed photons from UV light into a molecular signal; ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 400 nanometers. tmpzr1t_l9r_go_relaxed.owl phototransduction, UV light|UV-sensitive opsin|phototransduction, ultraviolet radiation|phototransduction, UV radiation|phototransduction, ultraviolet light biological_process owl:Class GO:0009589 biolink:NamedThing detection of UV The series of events in which an ultraviolet radiation (UV light) stimulus is received and converted into a molecular signal. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. tmpzr1t_l9r_go_relaxed.owl detection of ultraviolet radiation stimulus|detection of ultraviolet light stimulus|detection of UV radiation stimulus|perception of UV|detection of UV light stimulus biological_process owl:Class GO:1900453 biolink:NamedThing negative regulation of long-term synaptic depression Any process that stops, prevents or reduces the frequency, rate or extent of long term synaptic depression. tmpzr1t_l9r_go_relaxed.owl downregulation of LTD|negative regulation of long term depression|down regulation of long term synaptic depression|downregulation of long term synaptic depression|down-regulation of long term depression|down-regulation of long term synaptic depression|inhibition of LTD|downregulation of long term depression|down regulation of long term depression|down-regulation of LTD|negative regulation of LTD|down regulation of LTD|inhibition of long term depression|inhibition of long term synaptic depression|negative regulation of long term synaptic depression rl 2012-04-27T03:55:14Z biological_process owl:Class GO:0043525 biolink:NamedThing positive regulation of neuron apoptotic process Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of programmed cell death, neurons|up-regulation of neuron apoptosis|upregulation of neuron apoptosis|positive regulation of neuron apoptosis|stimulation of neuron apoptosis|up regulation of neuron apoptosis|activation of neuron apoptosis biological_process owl:Class GO:1900978 biolink:NamedThing negative regulation of tatiopterin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tatiopterin metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of tatiopterin metabolic process|down regulation of tatiopterin metabolic process|negative regulation of tatiopterin metabolism|down regulation of tatiopterin metabolism|inhibition of tatiopterin metabolism|downregulation of tatiopterin metabolism|down-regulation of tatiopterin metabolic process|down-regulation of tatiopterin metabolism|downregulation of tatiopterin metabolic process tt 2012-06-14T04:03:29Z biological_process owl:Class GO:2001191 biolink:NamedThing regulation of gamma-delta T cell activation involved in immune response Any process that modulates the frequency, rate or extent of gamma-delta T cell activation involved in immune response. tmpzr1t_l9r_go_relaxed.owl regulation of gamma-delta T lymphocyte activation during immune response|regulation of gamma-delta T cell activation during immune response|regulation of gamma-delta T-lymphocyte activation during immune response|regulation of gamma-delta T-cell activation during immune response yaf 2011-11-03T04:28:38Z biological_process owl:Class GO:0034115 biolink:NamedThing negative regulation of heterotypic cell-cell adhesion Any process that stops, prevents, or reduces the frequency, rate, or extent of heterotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090027 biolink:NamedThing negative regulation of monocyte chemotaxis Any process that decreases the frequency, rate, or extent of monocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:19:40Z biological_process owl:Class GO:1903445 biolink:NamedThing protein transport from ciliary membrane to plasma membrane The directed movement of protein from ciliary membrane to plasma membrane. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-18T07:46:10Z biological_process owl:Class GO:0061951 biolink:NamedThing establishment of protein localization to plasma membrane The directed movement of a protein to a specific location in a plasma membrane. tmpzr1t_l9r_go_relaxed.owl dph 2017-10-26T12:55:15Z biological_process owl:Class GO:0106369 biolink:NamedThing (deoxy)nucleoside phosphate kinase activity, GTP as phosphate donor Catalysis of the reaction: a 2'-deoxyribonucleoside 5'-phosphate + GTP = a 2'-deoxyribonucleoside 5'-diphosphate + GDP. tmpzr1t_l9r_go_relaxed.owl RHEA:62124 hjd 2021-03-11T20:12:21Z molecular_function owl:Class GO:0106048 biolink:NamedThing spermidine deacetylation The modification of acetylspermadine by the removal of acetyl groups. tmpzr1t_l9r_go_relaxed.owl N8-acetylspermidine deacetylation hjd 2017-08-01T18:39:17Z biological_process owl:Class GO:0106047 biolink:NamedThing polyamine deacetylation The modification of acetylpolyamine by the removal of acetyl groups. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-01T18:36:46Z biological_process owl:Class GO:0010081 biolink:NamedThing regulation of inflorescence meristem growth Any process involved in maintaining the size and shape of an inflorescence meristem. tmpzr1t_l9r_go_relaxed.owl regulation of inflorescence meristem size biological_process owl:Class GO:0003364 biolink:NamedThing lamellipodium assembly involved in mesendodermal cell migration Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell that contributes to the directed self-propelled movement of a mesendodermal cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T04:46:39Z biological_process owl:Class GO:0120108 biolink:NamedThing DNA-3'-diphospho-5'-guanosine diphosphatase Catalysis of the reaction: (DNA)-3'-diphospho-5'-guanosine + H(2)O <=> (DNA)-3'-phosphate + GMP. tmpzr1t_l9r_go_relaxed.owl DNA-3'pp5'G guanylate hydrolase RHEA:52140|EC:3.6.1.72 krc 2017-10-17T22:12:59Z molecular_function owl:Class GO:0016788 biolink:NamedThing hydrolase activity, acting on ester bonds Catalysis of the hydrolysis of any ester bond. tmpzr1t_l9r_go_relaxed.owl esterase activity Reactome:R-HSA-9023619|Reactome:R-HSA-162729|Reactome:R-HSA-9023617|EC:3.1.-.- molecular_function owl:Class GO:0006259 biolink:NamedThing DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. tmpzr1t_l9r_go_relaxed.owl cellular DNA metabolism|DNA metabolism GO:0055132 biological_process owl:Class GO:0098934 biolink:NamedThing retrograde dendritic transport The directed movement of organelles or molecules along microtubules in a dendrite from the postsynapse towards the cell body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098935 biolink:NamedThing dendritic transport The directed movement of organelles or molecules along microtubules in dendrites. tmpzr1t_l9r_go_relaxed.owl dendrite cargo transport biological_process owl:Class GO:0044012 biolink:NamedThing histone acetyltransferase activity (H2A-K9 specific) Catalysis of the reaction: acetyl-CoA + histone H2A L-lysine (position 9) = CoA + histone H2A N6-acetyl-L-lysine (position 9). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H2A-K9 specific) molecular_function owl:Class GO:2000551 biolink:NamedThing regulation of T-helper 2 cell cytokine production Any process that modulates the frequency, rate or extent of T-helper 2 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of Th2 cell cytokine production ebc 2011-04-03T07:32:47Z biological_process owl:Class GO:0019879 biolink:NamedThing peptidyl-thyronine biosynthetic process from peptidyl-tyrosine The formation of peptidyl-thyronine from peptidyl-tyrosine in thyroglobulin by phenyl transfer coupled with the formation of peptidyl-dehydroalanine. tmpzr1t_l9r_go_relaxed.owl peptidyl-thyronine anabolism from peptidyl-tyrosine|peptidyl-thyronine synthesis from peptidyl-tyrosine|peptidyl-thyronine formation from peptidyl-tyrosine See also the biological process term 'peptidyl-dehydroalanine biosynthetic process from peptidyl-tyrosine or peptidyl-serine ; GO:0018250'. biological_process owl:Class GO:0010550 biolink:NamedThing regulation of PSII associated light-harvesting complex II catabolic process Any process that modulates the chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. tmpzr1t_l9r_go_relaxed.owl regulation of LHCII catabolism|regulation of LHCII degradation biological_process owl:Class GO:0010974 biolink:NamedThing negative regulation of division septum assembly Any process that decreases the frequency, rate or extent of division septum formation. division septum formation is he assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl inhibition of division septum assembly involved in cell cycle cytokinesis|negative regulation of division septum formation tb 2009-06-01T10:32:32Z GO:1902469|GO:1901139 biological_process owl:Class GO:0009245 biolink:NamedThing lipid A biosynthetic process The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common. tmpzr1t_l9r_go_relaxed.owl lipid A biosynthesis|lipid A synthesis|lipid A anabolism|lipid A formation MetaCyc:NAGLIPASYN-PWY biological_process owl:Class GO:0072659 biolink:NamedThing protein localization to plasma membrane A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation in plasma membrane|protein localization in plasma membrane|protein-plasma membrane targeting|protein targeting to plasma membrane tb 2009-07-10T10:29:23Z GO:0090002|GO:0072661 biological_process owl:Class GO:1904381 biolink:NamedThing Golgi apparatus mannose trimming Any protein alpha-1,2-demannosylation that takes place in the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl mannose trimming in Golgi apparatus|protein alpha-1,2-demannosylation in Golgi apparatus|protein alpha-1,2-demannosylation in Golgi complex|glycoprotein mannose trimming in Golgi apparatus|glycoprotein mannose trimming in Golgi ribbon|glycoprotein mannose trimming in Golgi complex|mannose trimming in cis-Golgi|protein alpha-1,2-demannosylation in Golgi ribbon|mannose trimming in Golgi bf 2015-06-23T09:42:06Z biological_process owl:Class GO:0000753 biolink:NamedThing cell morphogenesis involved in conjugation with cellular fusion The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo conjugation cellular fusion. tmpzr1t_l9r_go_relaxed.owl shmoo orientation|shmooing GO:0007332 biological_process owl:Class GO:0000767 biolink:NamedThing cell morphogenesis involved in conjugation The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046730 biolink:NamedThing induction by virus of host immune response The induction by a virus of an immune response in the host organism. tmpzr1t_l9r_go_relaxed.owl passive viral induction of cell-mediated immune response in host|passive induction of host immune response by virus|passive induction of host innate immune response by virus|passive viral activation of innate immune response in host|activation of host immune response by virus|active viral induction of host immune response|passive induction of host cell-mediated immune response by virus|passive induction of innate immune response in host by virus|passive activation of host immune response by virus|passive viral activation of humoral immune response in host|passive viral induction of humoral immune response in host|passive viral induction of innate immune response in host|passive viral induction of host immune response|passive induction of cell-mediated immune response in host by virus|active induction of host immune response by virus|passive induction of humoral immune response in host by virus|passive induction of host humoral immune response by virus|passive viral activation of cell-mediated immune response in host GO:0046732|GO:0046731|GO:0046733|GO:0046735|GO:0046734 biological_process owl:Class GO:0003875 biolink:NamedThing ADP-ribosylarginine hydrolase activity Catalysis of the reaction: N2-(ADP-D-ribosyl)-L-arginine + H2O = L-arginine + ADP-ribose. tmpzr1t_l9r_go_relaxed.owl nomega-(ADP-D-ribosyl)-L-arginine ADP-ribosylhydrolase activity|N(omega)-(ADP-D-ribosyl)-L-arginine ADP-ribosylhydrolase activity|ADP-ribose-L-arginine cleavage enzyme activity|omega-protein-N-(ADP-D-ribosyl)-L-arginine ADP-ribosylhydrolase activity|protein-nomega-(ADP-D-ribosyl)-L-arginine ADP-ribosylhydrolase activity|protein ADP-ribosylarginine hydrolase activity|ADP-ribose-L-arginine cleaving enzyme activity|ADPribosylarginine hydrolase activity RHEA:20784|EC:3.2.2.19|MetaCyc:ADP-RIBOSYLARGININE-HYDROLASE-RXN molecular_function owl:Class GO:0061949 biolink:NamedThing regulation of premature acrosome loss Any process that modulates the rate, frequency or extent of the discharge, by sperm, of a single, anterior secretory granule before the sperm reaches to the zona pellucida of the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the exocytosis of the acrosomal contents. tmpzr1t_l9r_go_relaxed.owl dph 2017-10-25T17:51:32Z biological_process owl:Class GO:0097107 biolink:NamedThing postsynaptic density assembly The aggregation, arrangement and bonding together of a set of components to form a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse. tmpzr1t_l9r_go_relaxed.owl post-synaptic density assembly|post synaptic density assembly|PSD assembly pr 2011-07-27T05:21:39Z biological_process owl:Class GO:0070609 biolink:NamedThing regulation of fungal-type cell wall (1->3)-alpha-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl regulation of ascospore wall 1,3-alpha-glucan metabolism|regulation of ascospore wall alpha-1,3 glucan metabolic process|regulation of fungal-type cell wall 1,3-alpha-glucan metabolic process|regulation of ascospore wall alpha-1,3 glucan metabolism mah 2009-04-29T01:29:02Z biological_process owl:Class GO:0090275 biolink:NamedThing negative regulation of somatostatin secretion Any process that decreases the rate, frequency, extent of the regulated release of somatostatin from secretory granules in the D cells of the pancreas. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:54:14Z biological_process owl:Class GO:0090278 biolink:NamedThing negative regulation of peptide hormone secretion Any process that decreases the rate, frequency, or extent of the regulated release of a peptide hormone from secretory granules. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:56:39Z biological_process owl:Class GO:1904603 biolink:NamedThing regulation of advanced glycation end-product receptor activity Any process that modulates the frequency, rate or extent of advanced glycation end-product receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of RAGE activity|regulation of AGE receptor activity krc 2015-08-26T16:24:49Z biological_process owl:Class GO:0051224 biolink:NamedThing negative regulation of protein transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein transport|inhibition of protein transport|downregulation of protein transport|down regulation of protein transport biological_process owl:Class GO:0097544 biolink:NamedThing ciliary shaft The mid part of a cilium between the ciliary base and ciliary tip that extends into the extracellular space. tmpzr1t_l9r_go_relaxed.owl cilial shaft|flagellum shaft|flagellar shaft|cilium shaft Note that 'ciliary shaft' is sparingly used in the literature to denote the projecting part of the cilium; many authors would refer to the axoneme instead. However, the definition of GO:0005930 'axoneme' is rather stringent, and the localization of many ciliary proteins would not fit that definition. Also, note that cilia and eukaryotic flagella are deemed to be equivalent. pr 2013-12-12T11:17:30Z cellular_component owl:Class GO:0033528 biolink:NamedThing S-methylmethionine cycle A cyclic series of interconversions involving S-methyl-L-methionine, S-adenosyl-L-homocysteine, S-adenosyl-L-methionine, L-homocysteine, and L-methionine. Converts the methionine group of adenosylmethionine back to free methionine, and may serve regulate the cellular adenosylmethionine level. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5441 biological_process owl:Class GO:0090507 biolink:NamedThing phenylethylamine metabolic process involved in synaptic transmission The chemical reactions and pathways involving phenylethylamine that contribute to synaptic transmission. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-15T15:06:08Z biological_process owl:Class GO:0003904 biolink:NamedThing deoxyribodipyrimidine photo-lyase activity Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light. tmpzr1t_l9r_go_relaxed.owl deoxyribodipyrimidine photolyase activity|DNA cyclobutane dipyrimidine photolyase activity|photolyase activity|PhrB photolyase activity|deoxyribocyclobutadipyrimidine pyrimidine-lyase activity|CPD photolyase activity|deoxyribonucleic cyclobutane dipyrimidine photolyase activity|photoreactivating enzyme activity|DNA-photoreactivating enzyme|deoxyribonucleate pyrimidine dimer lyase (photosensitive)|PRE|phr A photolyase activity|dipyrimidine photolyase (photosensitive)|deoxyribonucleic photolyase activity MetaCyc:DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN|RHEA:10672|EC:4.1.99.3 molecular_function owl:Class GO:0003913 biolink:NamedThing DNA photolyase activity Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN molecular_function owl:Class GO:0140639 biolink:NamedThing positive regulation of pyroptosis Any process that increases the frequency, rate or extent of pyroptosis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21399 pg 2021-05-11T05:19:17Z biological_process owl:Class GO:1904107 biolink:NamedThing protein localization to microvillus membrane A process in which a protein is transported to, or maintained in, a location within a microvillus membrane. tmpzr1t_l9r_go_relaxed.owl protein localization in microvillus membrane|protein localisation in microvillus membrane|protein localisation to microvillus membrane kmv 2015-04-01T18:14:48Z biological_process owl:Class GO:0097330 biolink:NamedThing response to 5-fluoro-2'-deoxyuridine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 5-fluoro-2'-deoxyuridine stimulus. 5-fluoro-2'-deoxyuridine is a pyrimidine 2'-deoxyribonucleoside compound having 5-fluorouracil as the nucleobase; it is used to treat hepatic metastases of gastrointestinal adenocarcinomas and for palliation in malignant neoplasms of the liver and gastrointestinal tract. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:53:35Z biological_process owl:Class GO:0032834 biolink:NamedThing positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells as part of an immune response. tmpzr1t_l9r_go_relaxed.owl activation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development involved in immune response|stimulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation during immune response|up regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation during immune response|up-regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation during immune response|upregulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0019234 biolink:NamedThing sensory perception of fast pain The series of events required for an organism to receive a fast pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. Fast pain is often subjectively described as a sharp or stabbing pain; in humans, the signals from a fast pain stimulus are perceived and relayed along myelinated A-delta fibers to the central nervous system, reaching their target in about 0.1 seconds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019233 biolink:NamedThing sensory perception of pain The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl nociception|perception of physiological pain Wikipedia:Nociception biological_process owl:Class GO:0071802 biolink:NamedThing negative regulation of podosome assembly Any process that stops, prevents or reduces the rate or extent of podosome assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of podosome assembly|downregulation of podosome assembly|down regulation of podosome assembly|down-regulation of podosome assembly mah 2010-09-03T01:49:14Z biological_process owl:Class GO:0016819 biolink:NamedThing hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains a sulfonyl group, -SO2-. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid anhydrides, in sulphonyl-containing anhydrides EC:3.6.2.- molecular_function owl:Class GO:0060730 biolink:NamedThing regulation of intestinal epithelial structure maintenance Any process that modulates the rate, frequency, or extent of intestinal epithelial structure maintenance, a tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T01:49:34Z biological_process owl:Class GO:1902967 biolink:NamedThing protein localization to mitotic spindle midzone A process in which a protein is transported to, or maintained in, a location within a mitotic spindle midzone. tmpzr1t_l9r_go_relaxed.owl protein localization in mitotic spindle midzone|protein localisation to mitotic spindle midzone|protein localisation in mitotic spindle midzone mah 2014-05-06T14:40:01Z biological_process owl:Class GO:0030889 biolink:NamedThing negative regulation of B cell proliferation Any process that stops, prevents or reduces the rate or extent of B cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of B cell proliferation|downregulation of B cell proliferation|inhibition of B cell proliferation|down-regulation of B cell proliferation|negative regulation of B-lymphocyte proliferation|negative regulation of B-cell proliferation|negative regulation of B lymphocyte proliferation biological_process owl:Class GO:0102509 biolink:NamedThing cyanidin 3,5-diglucoside glucosidase activity Catalysis of the reaction: cyanin betaine + H2O <=> cyanidin 3-O-beta-D-glucoside betaine + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14436 molecular_function owl:Class GO:0016497 biolink:NamedThing substance K receptor activity Combining with substance K, the peptide His-Lys-Thr-Asp-Ser-Phe-Val-Gly-Leu-Met, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl neurokinin A receptor activity|neuromedin L receptor activity molecular_function owl:Class GO:0004995 biolink:NamedThing tachykinin receptor activity Combining with a tachykinin neuropeptide and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072279 biolink:NamedThing convergent extension involved in metanephric nephron morphogenesis The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:16:11Z biological_process owl:Class GO:0001197 biolink:NamedThing positive regulation of mating-type specific transcription from RNA polymerase II promoter Any mating-type specific process that activates or increases the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl up regulation of transcription from an RNA polymerase II promoter, mating-type specific|up-regulation of transcription from an RNA polymerase II promoter, mating-type specific|stimulation of transcription from an RNA polymerase II promoter, mating-type specific|upregulation of transcription from an RNA polymerase II promoter, mating-type specific|activation of transcription from an RNA polymerase II promoter, mating-type specific krc 2011-11-23T09:31:33Z biological_process owl:Class GO:1990457 biolink:NamedThing pexophagosome A membrane-bounded intracellular vesicle involved in the degradation of peroxisome by macropexophagy. tmpzr1t_l9r_go_relaxed.owl dhl 2014-08-15T18:51:53Z cellular_component owl:Class GO:0030173 biolink:NamedThing integral component of Golgi membrane The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl Golgi integral membrane protein|integral to Golgi membrane cellular_component owl:Class GO:0097187 biolink:NamedThing dentinogenesis The process whose specific outcome is the formation of dentin, the mineralized tissue that constitutes the major bulk of teeth. Dentin may be one of three types: primary dentin, secondary dentin, and tertiary dentin. tmpzr1t_l9r_go_relaxed.owl dentine development|dentin development pr 2011-11-21T09:04:17Z biological_process owl:Class GO:0015364 biolink:NamedThing dicarboxylate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + inorganic phosphate(in) = dicarboxylate(in) + inorganic phosphate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021930 biolink:NamedThing cerebellar granule cell precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043063 biolink:NamedThing intercellular bridge organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the intracellular bridge. An intracellular bridge is a direct link between the cytoplasms of sister cells that allows cells to communicate with one another. tmpzr1t_l9r_go_relaxed.owl intercellular bridge organisation|intercellular bridge organization and biogenesis biological_process owl:Class GO:0043062 biolink:NamedThing extracellular structure organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite. tmpzr1t_l9r_go_relaxed.owl extracellular structure organization and biogenesis|extracellular structure organisation biological_process owl:Class GO:1904648 biolink:NamedThing cellular response to rotenone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rotenone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T20:55:39Z biological_process owl:Class GO:1904647 biolink:NamedThing response to rotenone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rotenone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T20:55:32Z biological_process owl:Class GO:1905296 biolink:NamedThing negative regulation of neural crest cell fate specification Any process that stops, prevents or reduces the frequency, rate or extent of neural crest cell fate specification. tmpzr1t_l9r_go_relaxed.owl down regulation of neural crest cell fate specification|downregulation of neural crest cell fate specification|down-regulation of neural crest cell fate specification|inhibition of neural crest cell fate specification rl 2016-06-28T15:14:49Z biological_process owl:Class GO:0065009 biolink:NamedThing regulation of molecular function Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. tmpzr1t_l9r_go_relaxed.owl regulation of a molecular function biological_process owl:Class GO:0102818 biolink:NamedThing lycopene cleavage oxygenase activity Catalysis of the reaction: lycopene + 2 O2 <=> 2 sulcatone + bixin aldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8236 molecular_function owl:Class GO:1900118 biolink:NamedThing negative regulation of execution phase of apoptosis Any process that stops, prevents or reduces the frequency, rate or extent of execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of execution phase of apoptosis|inhibition of execution phase of apoptosis|down regulation of execution phase of apoptosis|downregulation of execution phase of apoptosis pr 2012-02-22T11:26:24Z biological_process owl:Class GO:1900117 biolink:NamedThing regulation of execution phase of apoptosis Any process that modulates the frequency, rate or extent of execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-22T11:26:20Z biological_process owl:Class GO:0098544 biolink:NamedThing maintenance of protein complex location Any process in which a protein complex is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of protein complexes that move away. tmpzr1t_l9r_go_relaxed.owl dos 2013-11-15T18:20:16Z biological_process owl:Class GO:1901851 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin catabolic process The chemical reactions and pathways resulting in the breakdown of 7,8-didemethyl-8-hydroxy-5-deazariboflavin. tmpzr1t_l9r_go_relaxed.owl coenzyme F0 catabolism|7,8-didemethyl-8-hydroxy-5-deazariboflavin catabolism|coenzyme F0 catabolic process|coenzyme F0 breakdown|7,8-didemethyl-8-hydroxy-5-deazariboflavin degradation|coenzyme F0 degradation|7,8-didemethyl-8-hydroxy-5-deazariboflavin breakdown yaf 2013-01-28T11:38:36Z biological_process owl:Class GO:0047334 biolink:NamedThing diphosphate-fructose-6-phosphate 1-phosphotransferase activity Catalysis of the reaction: fructose-6-phosphate + diphosphate = phosphate + fructose-1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 6-phosphofructokinase (diphosphate) activity|diphosphate-dependent 6-phosphofructose-1-kinase activity|pyrophosphate-fructose 6-phosphate phosphotransferase activity|6-phosphofructokinase (pyrophosphate) activity|pyrophosphate-dependent 6-phosphofructose-1-kinase activity|diphosphate:D-fructose-6-phosphate 1-phosphotransferase activity|pyrophosphate-dependent phosphofructo-1-kinase activity|pyrophosphate--fructose 6-phosphate 1-phosphotransferase activity|inorganic pyrophosphate-dependent phosphofructokinase activity|inorganic pyrophosphate-phosphofructokinase activity MetaCyc:2.7.1.90-RXN|EC:2.7.1.90|RHEA:13613 molecular_function owl:Class GO:0099084 biolink:NamedThing postsynaptic specialization organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic specialization, a structure that lies adjacent to the cytoplasmic face of the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl post synaptic specialization organization|postsynaptic specialization organisation|post-synaptic specialization organization pr 2011-07-27T05:17:12Z biological_process owl:Class GO:0042126 biolink:NamedThing nitrate metabolic process The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. tmpzr1t_l9r_go_relaxed.owl nitrate metabolism biological_process owl:Class GO:1901119 biolink:NamedThing tobramycin metabolic process The chemical reactions and pathways involving tobramycin. tmpzr1t_l9r_go_relaxed.owl tobramycin metabolism yaf 2012-07-11T03:15:19Z biological_process owl:Class GO:0098660 biolink:NamedThing inorganic ion transmembrane transport The process in which an inorganic ion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl inorganic ion membrane transport|transmembrane inorganic ion transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0010598 biolink:NamedThing NAD(P)H dehydrogenase complex (plastoquinone) Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035825 biolink:NamedThing homologous recombination A DNA recombination process that results in the exchange of an equal amount of genetic material between highly homologous DNA molecules. tmpzr1t_l9r_go_relaxed.owl interchromosomal DNA recombination|chromosomal crossover|reciprocal DNA recombination|interstrand DNA recombination https://github.com/geneontology/go-ontology/issues/18777 Wikipedia:Chromosomal_crossover bf 2011-05-04T01:23:31Z biological_process owl:Class GO:0098987 biolink:NamedThing regulation of modification of synapse structure, modulating synaptic transmission Any process that regulates the modification of synaptic structure and as a result regulates synaptic transmission. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0008816 biolink:NamedThing citryl-CoA lyase activity Catalysis of the reaction: (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl (3S)-citryl-CoA oxaloacetate-lyase activity|(3S)-citryl-CoA oxaloacetate-lyase (acetyl-CoA-forming) EC:4.1.3.34|MetaCyc:CITRYLY-RXN|RHEA:20812 molecular_function owl:Class GO:1903690 biolink:NamedThing negative regulation of wound healing, spreading of epidermal cells Any process that stops, prevents or reduces the frequency, rate or extent of wound healing, spreading of epidermal cells. tmpzr1t_l9r_go_relaxed.owl downregulation of wound healing, spreading of epidermal cells|down-regulation of wound healing, spreading of epidermal cells|down regulation of wound healing, spreading of epidermal cells|inhibition of wound healing, spreading of epidermal cells als 2014-12-01T15:54:27Z biological_process owl:Class GO:1901727 biolink:NamedThing positive regulation of histone deacetylase activity Any process that activates or increases the frequency, rate or extent of histone deacetylase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of histone deacetylase activity|upregulation of histone deacetylase activity|up-regulation of histone deacetylase activity|activation of histone deacetylase activity rl 2013-01-07T09:14:21Z biological_process owl:Class GO:0090045 biolink:NamedThing positive regulation of deacetylase activity Any process that activates or increases the frequency, rate or extent of deacetylase activity, the catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T12:00:14Z biological_process owl:Class GO:0035855 biolink:NamedThing megakaryocyte development The process whose specific outcome is the progression of a megakaryocyte cell over time, from its formation to the mature structure. Megakaryocyte development does not include the steps involved in committing a cell to a megakaryocyte fate. A megakaryocyte is a giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow. tmpzr1t_l9r_go_relaxed.owl megakaryocyte cell development bf 2011-05-13T01:28:06Z biological_process owl:Class GO:0042539 biolink:NamedThing hypotonic salinity response Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl response to hypotonic salt stress biological_process owl:Class GO:1902092 biolink:NamedThing positive regulation of fumagillin biosynthetic process Any process that activates or increases the frequency, rate or extent of fumagillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of fumagillin biosynthetic process|activation of fumagillin formation|up-regulation of fumagillin formation|activation of fumagillin biosynthesis|activation of fumagillin synthesis|positive regulation of fumagillin synthesis|up regulation of fumagillin anabolism|up regulation of fumagillin synthesis|upregulation of fumagillin anabolism|up regulation of fumagillin formation|positive regulation of fumagillin biosynthesis|positive regulation of fumagillin formation|upregulation of fumagillin biosynthesis|activation of fumagillin anabolism|up-regulation of fumagillin anabolism|activation of fumagillin biosynthetic process|upregulation of fumagillin synthesis|positive regulation of fumagillin anabolism|upregulation of fumagillin formation|up regulation of fumagillin biosynthetic process|upregulation of fumagillin biosynthetic process|up regulation of fumagillin biosynthesis|up-regulation of fumagillin biosynthesis|up-regulation of fumagillin synthesis di 2013-04-27T03:45:09Z biological_process owl:Class GO:0031351 biolink:NamedThing integral component of plastid membrane The component of the plastid membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to plastid membrane cellular_component owl:Class GO:0000228 biolink:NamedThing nuclear chromosome A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact. tmpzr1t_l9r_go_relaxed.owl nuclear interphase chromosome cellular_component owl:Class GO:0060100 biolink:NamedThing positive regulation of phagocytosis, engulfment Any process that activates or increases the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060099 biolink:NamedThing regulation of phagocytosis, engulfment Any process that modulates the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007295 biolink:NamedThing growth of a germarium-derived egg chamber Growth of the egg chamber between the time it leaves the germarium and the onset of vitellogenesis. During this time both nurse cells and the oocyte undergo developmental changes including nuclear organization and cytoplasmic growth. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl egg chamber growth biological_process owl:Class GO:0042501 biolink:NamedThing serine phosphorylation of STAT protein The process of introducing a phosphate group to a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl serine phosphorylation of STAT3 protein GO:0033136 biological_process owl:Class GO:0070767 biolink:NamedThing BRCA1-Rad51 complex A protein complex that contains BRCA1 and Rad 51, and is involved in the control of recombination and of genome integrity. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-29T05:04:21Z cellular_component owl:Class GO:0019928 biolink:NamedThing peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid The cross-linking of a cysteine residue to an aspartic acid residue to form 3-(S-L-cysteinyl)-L-aspartic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0314 biological_process owl:Class GO:0106395 biolink:NamedThing positive regulation of palmitic acid catabolic process Any process that activates or increases the frequency, rate or extent of a palmitic acid catabolic process. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T15:30:08Z biological_process owl:Class GO:2000740 biolink:NamedThing negative regulation of mesenchymal stem cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:31:31Z biological_process owl:Class GO:2000739 biolink:NamedThing regulation of mesenchymal stem cell differentiation Any process that modulates the frequency, rate or extent of mesenchymal stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T02:31:27Z biological_process owl:Class GO:0030277 biolink:NamedThing maintenance of gastrointestinal epithelium Protection of epithelial surfaces of the gastrointestinal tract from proteolytic and caustic digestive agents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004556 biolink:NamedThing alpha-amylase activity Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. tmpzr1t_l9r_go_relaxed.owl 1,4-alpha-D-glucan glucanohydrolase activity|glycogenase activity|alpha amylase activity|taka-amylase A|endoamylase activity Reactome:R-HSA-191114|MetaCyc:RXN-1825|MetaCyc:ALPHA-AMYL-RXN|EC:3.2.1.1|MetaCyc:RXN-1823|Reactome:R-HSA-188979 molecular_function owl:Class GO:0016160 biolink:NamedThing amylase activity Catalysis of the hydrolysis of amylose or an amylose derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009093 biolink:NamedThing cysteine catabolic process The chemical reactions and pathways resulting in the breakdown of cysteine, 2-amino-3-mercaptopropanoic acid. tmpzr1t_l9r_go_relaxed.owl cysteine degradation|cysteine breakdown|cysteine catabolism Wikipedia:Cysteine biological_process owl:Class GO:0071454 biolink:NamedThing cellular response to anoxia Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. tmpzr1t_l9r_go_relaxed.owl cellular response to anaerobic conditions|cellular response to anoxic stress Note that this term should not be confused with 'cellular response to hypoxia ; GO:0071456'. mah 2009-12-16T04:44:20Z biological_process owl:Class GO:0048048 biolink:NamedThing embryonic eye morphogenesis The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048592 biolink:NamedThing eye morphogenesis The process in which the anatomical structures of the eye are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048748 biological_process owl:Class GO:1904779 biolink:NamedThing regulation of protein localization to centrosome Any process that modulates the frequency, rate or extent of protein localization to centrosome. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to centrosome An example is cdk-2 in C. elegans (UniProt ID O61847) in PMID:17115027 (inferred from mutant phenotype). es 2015-10-30T11:54:30Z biological_process owl:Class GO:2000568 biolink:NamedThing positive regulation of memory T cell activation Any process that activates or increases the frequency, rate or extent of memory T cell activation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:10:12Z biological_process owl:Class GO:0051962 biolink:NamedThing positive regulation of nervous system development Any process that activates, maintains or increases the frequency, rate or extent of nervous system development, the origin and formation of nervous tissue. tmpzr1t_l9r_go_relaxed.owl up regulation of nervous system development|up-regulation of nervous system development|stimulation of nervous system development|activation of nervous system development|upregulation of nervous system development biological_process owl:Class GO:0032808 biolink:NamedThing lacrimal gland development The process whose specific outcome is the progression of the lacrimal gland over time, from its formation to the mature structure. The lacrimal gland produces secretions that lubricate and protect the cornea of the eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071824 biolink:NamedThing protein-DNA complex subunit organization Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA complex. tmpzr1t_l9r_go_relaxed.owl protein-DNA complex subunit organisation|DNA-protein complex subunit organization mah 2010-09-08T10:03:26Z biological_process owl:Class GO:1903403 biolink:NamedThing negative regulation of renal phosphate excretion Any process that stops, prevents or reduces the frequency, rate or extent of renal phosphate excretion. tmpzr1t_l9r_go_relaxed.owl down regulation of renal phosphate excretion|down regulation of renal phosphate ion excretion|down-regulation of renal phosphate excretion|inhibition of renal phosphate ion excretion|downregulation of renal phosphate ion excretion|negative regulation of renal phosphate ion excretion|inhibition of renal phosphate excretion|downregulation of renal phosphate excretion|down-regulation of renal phosphate ion excretion pm 2014-09-01T13:47:10Z biological_process owl:Class GO:0019294 biolink:NamedThing keto-3-deoxy-D-manno-octulosonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl keto-3-deoxy-D-manno-octulosonic acid formation|keto-3-deoxy-D-manno-octulosonic acid synthesis|keto-3-deoxy-D-manno-octulosonic acid biosynthesis|KDO biosynthetic process|ketodeoxyoctanoate biosynthetic process|KDO biosynthesis|keto-3-deoxy-D-manno-octulosonic acid anabolism MetaCyc:KDOSYN-PWY biological_process owl:Class GO:0006232 biolink:NamedThing TDP biosynthetic process The chemical reactions and pathways resulting in the formation of TDP, ribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl TDP anabolism|TDP synthesis|TDP biosynthesis|TDP formation biological_process owl:Class GO:0048454 biolink:NamedThing sepal structural organization The process that contributes to the act of creating the structural organization of the sepal. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl sepal structural organisation GO:0048424 biological_process owl:Class GO:0098917 biolink:NamedThing retrograde trans-synaptic signaling Cell-cell signaling from post to pre-synapse, across the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099537 biolink:NamedThing trans-synaptic signaling Cell-cell signaling in either direction across the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902164 biolink:NamedThing positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator Any process that activates or increases the frequency, rate or extent of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. tmpzr1t_l9r_go_relaxed.owl activation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|up regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|upregulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|up-regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator lb 2013-05-22T12:39:29Z biological_process owl:Class GO:0031903 biolink:NamedThing microbody membrane The lipid bilayer surrounding a microbody. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060002 biolink:NamedThing plus-end directed microfilament motor activity A motor activity that generates movement along a microfilament towards the plus end, driven by ATP hydrolysis. The minus end of an actin filament is the end that does not preferentially add actin monomers. tmpzr1t_l9r_go_relaxed.owl plus-end directed actin-filament motor activity|plus-end directed actin filament motor activity|barbed-end directed actin-filament motor activity molecular_function owl:Class GO:0030949 biolink:NamedThing positive regulation of vascular endothelial growth factor receptor signaling pathway Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl upregulation of vascular endothelial growth factor receptor signaling pathway|up-regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of VEGF receptor signalling pathway|up regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular endothelial growth factor receptor signalling pathway|stimulation of vascular endothelial growth factor receptor signaling pathway|activation of vascular endothelial growth factor receptor signaling pathway|positive regulation of VEGF receptor signaling pathway biological_process owl:Class GO:0030947 biolink:NamedThing regulation of vascular endothelial growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl regulation of VEGF receptor signaling pathway|regulation of VEGF receptor signalling pathway|regulation of vascular endothelial growth factor receptor signalling pathway biological_process owl:Class GO:0050416 biolink:NamedThing formimidoylglutamate deiminase activity Catalysis of the reaction: N-formimidoyl-L-glutamate + H2O = N-formyl-L-glutamate + NH3. tmpzr1t_l9r_go_relaxed.owl N-formimidoyl-L-glutamate iminohydrolase activity|formiminoglutamate deiminase activity|formiminoglutamic iminohydrolase activity MetaCyc:FORMIMINOGLUTAMATE-DEIMINASE-RXN|EC:3.5.3.13|RHEA:22832 molecular_function owl:Class GO:0110031 biolink:NamedThing negative regulation of G2/MI transition of meiotic cell cycle Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to MI phase of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-12T20:36:35Z biological_process owl:Class GO:0009585 biolink:NamedThing red, far-red light phototransduction The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. tmpzr1t_l9r_go_relaxed.owl red-sensitive opsin|phytochrome signaling pathway biological_process owl:Class GO:0007602 biolink:NamedThing phototransduction The sequence of reactions within a cell required to convert absorbed photons into a molecular signal. tmpzr1t_l9r_go_relaxed.owl phototransduction, visible light, light adaptation|opsin|phototrophin mediated phototransduction Wikipedia:Visual_phototransduction biological_process owl:Class GO:0042304 biolink:NamedThing regulation of fatty acid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. tmpzr1t_l9r_go_relaxed.owl regulation of fatty acid synthesis|regulation of fatty acid formation|regulation of fatty acid biosynthesis|regulation of fatty acid anabolism biological_process owl:Class GO:2000770 biolink:NamedThing negative regulation of establishment or maintenance of cell polarity regulating cell shape Any process that stops, prevents or reduces the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-22T01:56:53Z biological_process owl:Class GO:2000769 biolink:NamedThing regulation of establishment or maintenance of cell polarity regulating cell shape Any process that modulates the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-22T01:56:49Z biological_process owl:Class GO:1903003 biolink:NamedThing positive regulation of protein deubiquitination Any process that activates or increases the frequency, rate or extent of protein deubiquitination. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein deubiquitylation|up-regulation of protein deubiquitylation|up-regulation of protein deubiquitinylation|upregulation of protein deubiquitylation|up regulation of protein deubiquitylation|activation of deubiquitination|up regulation of protein deubiquitination|up-regulation of protein deubiquitination|up-regulation of deubiquitination|positive regulation of protein deubiquitinylation|activation of protein deubiquitinylation|up regulation of protein deubiquitinylation|up regulation of deubiquitination|positive regulation of deubiquitination|upregulation of protein deubiquitination|activation of protein deubiquitylation|upregulation of deubiquitination|activation of protein deubiquitination|upregulation of protein deubiquitinylation bf 2014-05-12T15:39:10Z biological_process owl:Class GO:0005153 biolink:NamedThing interleukin-8 receptor binding Binding to an interleukin-8 receptor. tmpzr1t_l9r_go_relaxed.owl IL-8|interleukin-8 receptor ligand molecular_function owl:Class GO:0031003 biolink:NamedThing actin tubule A cellular structure, approximately 13 nm in diameter, consisting of three actin filaments bundled together. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0040010 biolink:NamedThing positive regulation of growth rate Any process that increases the rate of growth of all or part of an organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of growth rate|activation of growth rate|stimulation of growth rate|upregulation of growth rate|up regulation of growth rate Note that this term and its definition depart from the usual conventions for GO 'regulation' process terms; regulation of rate is not usually distinguished from regulation of extent or frequency, but it makes sense to do so for growth regulation. biological_process owl:Class GO:1901751 biolink:NamedThing leukotriene A4 metabolic process The chemical reactions and pathways involving leukotriene A4. tmpzr1t_l9r_go_relaxed.owl leukotriene A4 metabolism yaf 2013-01-14T11:04:56Z biological_process owl:Class GO:0050180 biolink:NamedThing phloretin hydrolase activity Catalysis of the reaction: H(2)O + phloretin = H(+) + phloretate + phloroglucinol. tmpzr1t_l9r_go_relaxed.owl lactase-phlorizin hydrolase|2',4,4',6'-tetrahydroxydehydrochalcone 1,3,5-trihydroxybenzenehydrolase activity EC:3.7.1.4|RHEA:23396|KEGG_REACTION:R02901|MetaCyc:PHLORETIN-HYDROLASE-RXN molecular_function owl:Class GO:0008608 biolink:NamedThing attachment of spindle microtubules to kinetochore The process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex. tmpzr1t_l9r_go_relaxed.owl kinetochore-microtubule interaction|amphotelic attachment|microtubule anchoring at kinetochore|bipolar attachment|microtubule capture|microtubule and kinetochore interaction|spindle-chromosome interaction|kinetochore microtubule interaction|attachment of spindle microtubules to chromosome|spindle kinetochore attachment|kinetochore-microtubule attachment|microtubule and chromosome interaction|spindle chromosome attachment This class covers all attachments of spindle microtubules to the kinetochore, including the many incorrect attachments which initially form and are later corrected to stable attachments with the correct orientation for segregation to proceed (sister chromatid biorientation). GO:0051313 biological_process owl:Class GO:0009992 biolink:NamedThing cellular water homeostasis Any process involved in the maintenance of an internal steady state of water within a cell. tmpzr1t_l9r_go_relaxed.owl cellular osmoregulation biological_process owl:Class GO:0070229 biolink:NamedThing negative regulation of lymphocyte apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of lymphocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of lymphocyte apoptosis|down-regulation of lymphocyte apoptosis|down regulation of lymphocyte apoptosis|negative regulation of lymphocyte apoptosis|downregulation of lymphocyte apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). biological_process owl:Class GO:1902613 biolink:NamedThing negative regulation of anti-Mullerian hormone signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of anti-Mullerian hormone signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of anti-Mullerian hormone signaling pathway|down-regulation of anti-Mullerian hormone signaling pathway|down regulation of anti-Mullerian hormone signaling pathway|downregulation of anti-Mullerian hormone signaling pathway hjd 2014-01-09T15:39:39Z biological_process owl:Class GO:0061290 biolink:NamedThing canonical Wnt signaling pathway involved in metanephric kidney development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contribute to the progression of the metanephric kidney over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in metanephric kidney development|canonical Wnt receptor signaling pathway involved in metanephric kidney development|canonical Wnt-activated signaling pathway involved in metanephric kidney development dph 2010-09-03T12:06:10Z biological_process owl:Class GO:0009199 biolink:NamedThing ribonucleoside triphosphate metabolic process The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside triphosphate metabolism biological_process owl:Class GO:0072724 biolink:NamedThing response to 4-nitroquinoline N-oxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4-nitroquinoline N-oxide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-05-31T11:00:37Z biological_process owl:Class GO:0034344 biolink:NamedThing regulation of type III interferon production Any process that modulates the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl regulation of type III IFN production Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. biological_process owl:Class GO:0032425 biolink:NamedThing positive regulation of mismatch repair Any process that activates or increases the frequency, rate or extent of mismatch repair. tmpzr1t_l9r_go_relaxed.owl activation of mismatch repair|up-regulation of mismatch repair|upregulation of mismatch repair|up regulation of mismatch repair|stimulation of mismatch repair biological_process owl:Class GO:0102865 biolink:NamedThing delta6-acyl-lipid desaturase activity Catalysis of the reaction: a gamma-linolenoyl-[glycerolipid] + 2 ferrocytochrome b5 + O(2) + 2 H(+) <=> a (9Z,12Z)-octadeca-9,12-dien-6-ynoyl-[glycerolipid] + 2 ferricytochrome b5 + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.38|RHEA:46536|MetaCyc:RXN-8343 molecular_function owl:Class GO:0071799 biolink:NamedThing cellular response to prostaglandin D stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin D stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T10:48:35Z biological_process owl:Class GO:0071379 biolink:NamedThing cellular response to prostaglandin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:33:52Z biological_process owl:Class GO:0034975 biolink:NamedThing protein folding in endoplasmic reticulum A protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation). tmpzr1t_l9r_go_relaxed.owl oxidative protein folding|protein folding in ER biological_process owl:Class GO:0062084 biolink:NamedThing regulation of capsule polysaccharide biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-31T15:58:08Z biological_process owl:Class GO:1901913 biolink:NamedThing regulation of capsule organization Any process that modulates the frequency, rate or extent of capsule organization. tmpzr1t_l9r_go_relaxed.owl regulation of capsule organization and biogenesis|regulation of capsule organisation di 2013-02-14T06:19:03Z biological_process owl:Class GO:1904369 biolink:NamedThing positive regulation of sclerenchyma cell differentiation Any process that activates or increases the frequency, rate or extent of sclerenchyma cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of sclerenchyma cell differentiation|upregulation of sclerenchyma cell differentiation|up-regulation of sclerenchyma cell differentiation tb 2015-06-17T19:53:06Z biological_process owl:Class GO:0051956 biolink:NamedThing negative regulation of amino acid transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of amino acid transport|down regulation of amino acid transport|downregulation of amino acid transport|negative regulation of amino acid transmembrane transport|inhibition of amino acid transport biological_process owl:Class GO:0035876 biolink:NamedThing maintenance of meiotic sister chromatid cohesion, arms The process in which the association between sister chromatids of a replicated chromosome along the length of the chromosome arms, is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl maintenance of sister chromatin cohesion along arms at meiosis I|maintenance of meiotic sister chromatin cohesion along arms bf 2011-05-31T09:37:53Z biological_process owl:Class GO:0033308 biolink:NamedThing hydroxyectoine transport The directed movement of hydroxyectoine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015697 biolink:NamedThing quaternary ammonium group transport The directed movement into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups. tmpzr1t_l9r_go_relaxed.owl quaternary ammonium compound transport|quaternary amine transport GO:0015845 biological_process owl:Class GO:0099154 biolink:NamedThing serotonergic synapse A synapse that uses serotonin as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dos 2017-07-05T14:22:05Z cellular_component owl:Class GO:0010506 biolink:NamedThing regulation of autophagy Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062000 biolink:NamedThing positive regulation of cardiac endothelial to mesenchymal transition Any process that activates or increases the frequency, rate or extent of cardiac endothelial to mesenchymal trnasition. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-16T16:31:06Z biological_process owl:Class GO:0061999 biolink:NamedThing regulation of cardiac endothelial to mesenchymal transition Any process that modulates the frequency, rate or extent of cardiac endothelial to mesenchymal transition. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-16T16:26:51Z biological_process owl:Class GO:0018669 biolink:NamedThing 3-hydroxybenzoate 6-monooxygenase activity Catalysis of the reaction: 3-hydroxybenzoate + H(+) + NADH + O(2) = 2,5-dihydroxybenzoate + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 3-hydroxybenzoate,NADH:oxygen oxidoreductase (6-hydroxylating)|m-hydroxybenzoate 6-hydroxylase activity|3-hydroxybenzoate 6-hydroxylase activity|3-hydroxybenzoic acid-6-hydroxylase activity EC:1.14.13.24|UM-BBD_reactionID:r0402|KEGG_REACTION:R02589|MetaCyc:3-HYDROXYBENZOATE-6-MONOOXYGENASE-RXN|RHEA:22692 molecular_function owl:Class GO:0035261 biolink:NamedThing external genitalia morphogenesis The process in which the anatomical structures of the external genitalia are generated and organized. The external genitalia are the outer sex organs, such as the penis or vulva in mammals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035112 biolink:NamedThing genitalia morphogenesis The process in which the anatomical structures of genitalia are generated and organized. The genitalia are the organs of reproduction or generation, external and internal. tmpzr1t_l9r_go_relaxed.owl genital morphogenesis biological_process owl:Class GO:0097669 biolink:NamedThing SCF-Skp2 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Skp2 in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:28:52Z cellular_component owl:Class GO:0062141 biolink:NamedThing nuclear exosome targeting complex A protein-containing complex that functions with the RNA exosome and contributes to the degradation of abberant transcripts. tmpzr1t_l9r_go_relaxed.owl NEXT complex dph 2019-08-29T14:46:59Z cellular_component owl:Class GO:0002293 biolink:NamedThing alpha-beta T cell differentiation involved in immune response The process in which an antigenically naive alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell during an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-lymphocyte differentiation during immune response|alpha-beta T cell differentiation during immune response|alpha-beta T-cell differentiation during immune response|alpha-beta T cell development involved in immune response|alpha-beta T lymphocyte differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0046632 biolink:NamedThing alpha-beta T cell differentiation The process in which a precursor cell type acquires the specialized features of an alpha-beta T cell. An alpha-beta T cell is a T cell that expresses an alpha-beta T cell receptor complex. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-cell differentiation|alpha-beta T-lymphocyte differentiation|alpha-beta T cell development|alpha-beta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0042644 biolink:NamedThing chloroplast nucleoid The region of a chloroplast to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019512 biolink:NamedThing lactose catabolic process via tagatose-6-phosphate The chemical reactions and pathways resulting in the breakdown of lactose, via the intermediate tagatose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl lactose breakdown via tagatose-6-phosphate|lactose degradation via tagatose-6-phosphate MetaCyc:LACTOSECAT-PWY biological_process owl:Class GO:0005990 biolink:NamedThing lactose catabolic process The chemical reactions and pathways resulting in the breakdown of lactose, the disaccharide galactopyranosyl-glucose. tmpzr1t_l9r_go_relaxed.owl lactose degradation|lactose breakdown|lactose catabolism biological_process owl:Class GO:0002483 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation biological_process owl:Class GO:0019883 biolink:NamedThing antigen processing and presentation of endogenous antigen The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl antigen presentation, endogenous antigen biological_process owl:Class GO:0060587 biolink:NamedThing regulation of lipoprotein lipid oxidation Any process that modulates the rate, frequency or extent of lipoprotein lipid oxidation. Lipoprotein lipid oxidation is the modification of a lipoprotein by oxidation of the lipid group. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-08T02:27:02Z biological_process owl:Class GO:0046546 biolink:NamedThing development of primary male sexual characteristics The process whose specific outcome is the progression of the primary male sexual characteristics over time, from their formation to the mature structures. The primary male sexual characteristics are the testes, and they develop in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045137 biolink:NamedThing development of primary sexual characteristics The process whose specific outcome is the progression of the primary sexual characteristics over time, from their formation to the mature structures. The primary sexual characteristics are the testes in males and the ovaries in females and they develop in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060345 biolink:NamedThing spleen trabecula formation The process of creating a trabecula in the spleen. A trabecula is a tissue element in the form of a small beam, strut or rod. tmpzr1t_l9r_go_relaxed.owl spleen trabecula biogenesis|spleen trabeculation biological_process owl:Class GO:0060343 biolink:NamedThing trabecula formation The process of creating a trabecula in an organ. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue. tmpzr1t_l9r_go_relaxed.owl trabecula biogenesis|trabeculation biological_process owl:Class GO:0007585 biolink:NamedThing respiratory gaseous exchange by respiratory system The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms. tmpzr1t_l9r_go_relaxed.owl respiration|breathing biological_process owl:Class GO:0019183 biolink:NamedThing histamine-gated chloride channel complex A protein complex that forms a transmembrane channel through which chloride ions may pass in response to histamine binding to the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034707 biolink:NamedThing chloride channel complex An ion channel complex through which chloride ions pass. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042547 biolink:NamedThing cell wall modification involved in multidimensional cell growth The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth. tmpzr1t_l9r_go_relaxed.owl cell wall modification during cell expansion|cell wall modification during multidimensional cell growth biological_process owl:Class GO:0001944 biolink:NamedThing vasculature development The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism. tmpzr1t_l9r_go_relaxed.owl vascular system development biological_process owl:Class GO:2000030 biolink:NamedThing regulation of response to red or far red light Any process that modulates the frequency, rate or extent of response to red or far red light. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:30:10Z biological_process owl:Class GO:0061475 biolink:NamedThing cytosolic valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA in the cytosol, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-06T12:29:42Z biological_process owl:Class GO:0006438 biolink:NamedThing valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. The valyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a valine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006198 biolink:NamedThing cAMP catabolic process The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl 3',5'-cAMP catabolism|cyclic AMP catabolism|cyclic AMP catabolic process|3',5' cAMP catabolic process|cAMP degradation|3',5'-cAMP catabolic process|cAMP breakdown|adenosine 3',5'-cyclophosphate catabolic process|cAMP catabolism|adenosine 3',5'-cyclophosphate catabolism|3',5' cAMP catabolism biological_process owl:Class GO:0009214 biolink:NamedThing cyclic nucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. tmpzr1t_l9r_go_relaxed.owl cyclic nucleotide catabolism|cyclic nucleotide breakdown|cyclic nucleotide degradation biological_process owl:Class GO:0150179 biolink:NamedThing positive regulation of phosphatidylserine metabolic process Any process that activates or increases the frequency, rate or extent of phosphatidylserine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:05:52Z biological_process owl:Class GO:0150178 biolink:NamedThing regulation of phosphatidylserine metabolic process Any process that modulates the frequency, rate or extent of phosphatidylserine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:05:21Z biological_process owl:Class GO:0045491 biolink:NamedThing xylan metabolic process The chemical reactions and pathways involving xylan, a polymer containing a beta-1,4-linked D-xylose backbone. tmpzr1t_l9r_go_relaxed.owl xylan metabolism biological_process owl:Class GO:0043478 biolink:NamedThing pigment accumulation in response to UV light The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043476 biolink:NamedThing pigment accumulation The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. tmpzr1t_l9r_go_relaxed.owl pigment accumulation in response to external stimulus biological_process owl:Class GO:2000354 biolink:NamedThing regulation of ovarian follicle development Any process that modulates the frequency, rate or extent of ovarian follicle development. tmpzr1t_l9r_go_relaxed.owl regulation of follicular phase yaf 2011-02-03T02:01:28Z biological_process owl:Class GO:0009107 biolink:NamedThing lipoate biosynthetic process The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. tmpzr1t_l9r_go_relaxed.owl lipoic acid formation|lipoate synthesis|lipoic acid biosynthetic process|lipoate biosynthesis|lipoic acid biosynthesis|lipoic acid anabolism|lipoate formation|lipoate anabolism|lipoic acid synthesis GO:0009105 biological_process owl:Class GO:0002834 biolink:NamedThing regulation of response to tumor cell Any process that modulates the frequency, rate, or extent of a response to tumor cell. tmpzr1t_l9r_go_relaxed.owl regulation of response to tumour cell biological_process owl:Class GO:0051270 biolink:NamedThing regulation of cellular component movement Any process that modulates the frequency, rate or extent of the movement of a cellular component. tmpzr1t_l9r_go_relaxed.owl regulation of cell movement|regulation of cellular component motion biological_process owl:Class GO:0039526 biolink:NamedThing modulation by virus of host apoptotic process Any process in which a virus modulates the frequency, rate or extent of apoptosis of infected host cells. tmpzr1t_l9r_go_relaxed.owl modulation by virus of host apoptosis|regulation by virus of host apoptosis|modulation of host cell apoptosis by virus VZ:1581 bf 2011-06-22T05:22:53Z biological_process owl:Class GO:1905772 biolink:NamedThing positive regulation of mesodermal cell differentiation Any process that activates or increases the frequency, rate or extent of mesodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of mesoderm cell differentiation|up-regulation of mesoderm cell differentiation|up regulation of mesoderm cell differentiation|activation of mesoderm cell differentiation|upregulation of mesodermal cell differentiation|up-regulation of mesodermal cell differentiation|positive regulation of mesoderm cell differentiation|activation of mesodermal cell differentiation|up regulation of mesodermal cell differentiation rph 2016-12-21T12:44:32Z biological_process owl:Class GO:1905770 biolink:NamedThing regulation of mesodermal cell differentiation Any process that modulates the frequency, rate or extent of mesodermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of mesoderm cell differentiation rph 2016-12-21T12:44:13Z biological_process owl:Class GO:0030374 biolink:NamedThing nuclear receptor coactivator activity A transcription coactivator activity that activates or increases the transcription of specific gene sets via binding to a DNA-bound nuclear receptor, either on its own or as part of a complex. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. A fourth class of coactivator activity is the bridging of a DNA-binding transcription factor to the general (basal) transcription machinery. The Mediator complex, which bridges sequence-specific DNA binding transcription factors and RNA polymerase, is also a transcription coactivator. tmpzr1t_l9r_go_relaxed.owl ligand-activated RNA polymerase II transcription factor binding transcription factor activity|transcription factor activity, ligand-activated RNA polymerase II transcription factor binding|ligand-dependent nuclear receptor transcription co-activator activity|nuclear receptor transcription coactivator activity|ligand-dependent nuclear receptor transcription coactivator activity https://github.com/geneontology/go-ontology/issues/20253|https://github.com/geneontology/go-ontology/issues/20464 For usage guidance, see comment in GO:0003712 ; transcription coregulator activity. bf 2011-11-29T01:53:30Z GO:0038049 molecular_function owl:Class GO:0003713 biolink:NamedThing transcription coactivator activity A transcription coregulator activity that activates or increases the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coactivators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. A fourth class of coactivator activity is the bridging of a DNA-binding transcription factor to the general (basal) transcription machinery. The Mediator complex, which bridges sequence-specific DNA binding transcription factors and RNA polymerase, is also a transcription coactivator. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription coactivator activity|transcription co-activator activity|RNA polymerase II transcription co-activator activity|RNA polymerase II transcription mediator activity https://github.com/geneontology/go-ontology/issues/20253|https://github.com/geneontology/go-ontology/issues/20464|https://github.com/geneontology/go-ontology/issues/15998|https://github.com/geneontology/go-ontology/issues/15665 For usage guidance, see comment in GO:0003712 ; transcription coregulator activity. krc 2010-11-24T03:08:19Z GO:0001105 molecular_function owl:Class GO:0045981 biolink:NamedThing positive regulation of nucleotide metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleotides. tmpzr1t_l9r_go_relaxed.owl positive regulation of nucleotide metabolism|up regulation of nucleotide metabolic process|activation of nucleotide metabolic process|stimulation of nucleotide metabolic process|upregulation of nucleotide metabolic process|up-regulation of nucleotide metabolic process biological_process owl:Class GO:0060812 biolink:NamedThing orthodenticle mRNA localization Any process in which orthodenticle mRNA is transported to and maintained in the oocyte and/or syncytial embryo as part of the process that will specify the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl orthodenticle mRNA localisation dph 2009-08-07T09:39:01Z biological_process owl:Class GO:0060811 biolink:NamedThing intracellular mRNA localization involved in anterior/posterior axis specification Any process in which mRNA is transported to, or maintained in, a specific location within the oocyte and/or syncytial embryo that contributes to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl intracellular mRNA localisation involved in anterior/posterior axis specification dph 2009-08-07T09:26:22Z biological_process owl:Class GO:0044667 biolink:NamedThing (R)-carnitine:4-(trimethylammonio)butanoate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (R)-carnitine(out) + 4-(trimethylammonio)butanoate(in) = (R)-carnitine(in) + 4-(trimethylammonio)butanoate(out). tmpzr1t_l9r_go_relaxed.owl (R)-carnitine:gamma-butyrobetaine antiporter activity|L-carnitine:4-(trimethylammonio)butanoate antiporter activity|L-carnitine:gamma-butyrobetaine antiporter activity RHEA:29427 jl 2012-08-08T11:17:12Z molecular_function owl:Class GO:1901236 biolink:NamedThing 4-(trimethylammonio)butanoate transmembrane transporter activity Enables the transfer of 4-(trimethylammonio)butanoate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:32835 jl 2012-08-07T14:46:52Z molecular_function owl:Class GO:0075276 biolink:NamedThing regulation of telium development Any process that modulates the frequency, rate or extent of telium development, a process that leads to the formation of a teliospore-bearing sorus of the rust fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018901 biolink:NamedThing 2,4-dichlorophenoxyacetic acid metabolic process The chemical reactions and pathways involving 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds. tmpzr1t_l9r_go_relaxed.owl 2,4-D metabolic process|2,4-dichlorophenoxyacetic acid metabolism|2,4-D metabolism UM-BBD_pathwayID:2,4-d biological_process owl:Class GO:0047636 biolink:NamedThing alanopine dehydrogenase activity Catalysis of the reaction: 2,2'-iminodipropanoate + H(2)O + NAD(+) = L-alanine + H(+) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl ADH|alanopine: NAD oxidoreductase activity|2,2'-iminodipropanoate:NAD+ oxidoreductase (L-alanine-forming)|alanopine[meso-N-(1-carboxyethyl)-alanine]dehydrogenase activity|meso-N-(1-carboxyethyl)-alanine:NAD+ oxidoreductase activity|alanopine:NAD oxidoreductase activity|ALPDH KEGG_REACTION:R00398|EC:1.5.1.17|MetaCyc:ALANOPINE-DEHYDROGENASE-RXN|RHEA:17589 molecular_function owl:Class GO:0045200 biolink:NamedThing establishment of neuroblast polarity The specification and formation of the apicobasal polarity of a neuroblast cell, a progenitor of the central nervous system. tmpzr1t_l9r_go_relaxed.owl establishment of neuroblast cell polarity GO:0043343|GO:0043340 biological_process owl:Class GO:1905795 biolink:NamedThing cellular response to puromycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a puromycin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine sl 2017-01-10T21:13:28Z biological_process owl:Class GO:0071577 biolink:NamedThing zinc ion transmembrane transport A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl zinc transmembrane transport|zinc ion membrane transport|zinc II ion transmembrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-01-28T02:17:12Z biological_process owl:Class GO:0006829 biolink:NamedThing zinc ion transport The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl zinc II ion transport|zinc transport biological_process owl:Class GO:0120267 biolink:NamedThing pellicular membrane The portion of the plasma membrane surrounding the pellicle, a structure enclosing some parasite cells such as certain apicomplexa and Euglenozoa. These membranes are associated with an infrastructure of microtubules, microfilaments, and other organelles. tmpzr1t_l9r_go_relaxed.owl pellicular plasma membrane|pellicle membrane https://github.com/geneontology/go-ontology/issues/20034 This sub-domain of the plasma membrane excludes the ciliary and ciliary pocket membranes. krc 2020-09-29T21:08:28Z cellular_component owl:Class GO:0005845 biolink:NamedThing mRNA cap binding complex Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA. tmpzr1t_l9r_go_relaxed.owl mRNA cap complex cellular_component owl:Class GO:0034518 biolink:NamedThing RNA cap binding complex Any protein complex that binds to a specialized RNA cap structure at any time in the lifetime of the RNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061954 biolink:NamedThing positive regulation of actin filament polymerization involved in sperm capacitation Any process that icreases the rate or extent of actin polymerization as part of sperm capacitation. This process prevents a spontaneous acrosome reaction. tmpzr1t_l9r_go_relaxed.owl dph 2017-11-10T19:40:00Z biological_process owl:Class GO:0042593 biolink:NamedThing glucose homeostasis Any process involved in the maintenance of an internal steady state of glucose within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033500 biolink:NamedThing carbohydrate homeostasis A homeostatic process involved in the maintenance of an internal steady state of a carbohydrate within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061528 biolink:NamedThing aspartate secretion The regulated release of aspartate by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:45:37Z biological_process owl:Class GO:0008773 biolink:NamedThing [protein-PII] uridylyltransferase activity Catalysis of the reaction: UTP + (protein-PII) = diphosphate + uridylyl-(protein-PII). tmpzr1t_l9r_go_relaxed.owl protein-PII uridylyltransferase activity|UTP:protein-PII uridylyltransferase activity|uridyl removing enzyme|UTP:[protein-PII] uridylyltransferase activity|PII uridylyl-transferase activity|uridylyl removing enzyme activity MetaCyc:URITRANS-RXN|RHEA:13673|EC:2.7.7.59 molecular_function owl:Class GO:0009876 biolink:NamedThing pollen adhesion The process in which pollen deposited on the stigma adheres to cells of the stigma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098609 biolink:NamedThing cell-cell adhesion The attachment of one cell to another cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl single organismal cell-cell adhesion dos 2014-04-16T13:40:03Z GO:0016337 biological_process owl:Class GO:0072040 biolink:NamedThing negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis Any process that reduces the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron. tmpzr1t_l9r_go_relaxed.owl negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis|negative regulation of mesenchymal stem cell apoptotic process involved in nephron morphogenesis mah 2010-01-25T03:09:30Z biological_process owl:Class GO:1904453 biolink:NamedThing positive regulation of potassium:proton exchanging ATPase activity Any process that activates or increases the frequency, rate or extent of hydrogen:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of H+/K+-ATPase activity|upregulation of H+/K+-ATPase activity|positive regulation of H(+)/K(+)-exchanging ATPase activity|up-regulation of hydrogen:potassium exchanging ATPase activity|up regulation of ATP phosphohydrolase (H+/K+-exchanging)|up-regulation of H(+)/K(+)-ATPase activity|upregulation of H(+)/K(+)-exchanging ATPase activity|activation of gastric H+/K+ ATPase|upregulation of hydrogen:potassium-exchanging ATPase activity|up regulation of H,K-ATPase activity|upregulation of H,K-ATPase activity|activation of hydrogen/potassium-exchanging ATPase activity|up regulation of hydrogen:potassium-exchanging ATPase activity|positive regulation of hydrogen:potassium-exchanging ATPase activity|positive regulation of H+/K+-exchanging ATPase activity|upregulation of (K+ + H+)-ATPase activity|up regulation of H+/K+-ATPase activity|activation of ATP phosphohydrolase (H+/K+-exchanging)|up-regulation of H+-K+-ATPase activity|positive regulation of H,K-ATPase activity|activation of hydrogen:potassium-exchanging ATPase activity|up-regulation of H+/K+-exchanging ATPase activity|positive regulation of gastric H(+)/K(+) ATPase activity|up-regulation of H,K-ATPase activity|activation of H,K-ATPase activity|positive regulation of hydrogen/potassium-exchanging ATPase activity|up-regulation of gastric H(+)/K(+) ATPase activity|up regulation of H+-K+-ATPase activity|upregulation of H+-K+-ATPase activity|up regulation of (K+ + H+)-ATPase activity|activation of H(+)/K(+)-ATPase activity|up regulation of gastric H+/K+ ATPase|upregulation of hydrogen:potassium exchanging ATPase activity|activation of H(+)/K(+)-exchanging ATPase activity|positive regulation of H+/K+-ATPase activity|up-regulation of hydrogen/potassium-exchanging ATPase activity|activation of gastric H(+)/K(+) ATPase activity|up regulation of hydrogen:potassium exchanging ATPase activity|up regulation of hydrogen/potassium-exchanging ATPase activity|up regulation of H+/K+-exchanging ATPase activity|upregulation of hydrogen/potassium-exchanging ATPase activity|positive regulation of ATP phosphohydrolase (H+/K+-exchanging)|upregulation of gastric H+/K+ ATPase|up-regulation of gastric H+/K+ ATPase|upregulation of H+/K+-exchanging ATPase activity|positive regulation of H(+)/K(+)-ATPase activity|upregulation of ATP phosphohydrolase (H+/K+-exchanging)|activation of (K+ + H+)-ATPase activity|positive regulation of H+-K+-ATPase activity|up-regulation of hydrogen:potassium-exchanging ATPase activity|activation of H+-K+-ATPase activity|up regulation of H(+)/K(+)-ATPase activity|activation of H+/K+-ATPase activity|up-regulation of H(+)/K(+)-exchanging ATPase activity|up-regulation of ATP phosphohydrolase (H+/K+-exchanging)|positive regulation of gastric H+/K+ ATPase|upregulation of gastric H(+)/K(+) ATPase activity|up regulation of gastric H(+)/K(+) ATPase activity|positive regulation of (K+ + H+)-ATPase activity|activation of H+/K+-exchanging ATPase activity|positive regulation of hydrogen:potassium exchanging ATPase activity|up-regulation of (K+ + H+)-ATPase activity|upregulation of H(+)/K(+)-ATPase activity|up regulation of H(+)/K(+)-exchanging ATPase activity|activation of hydrogen:potassium exchanging ATPase activity sl 2015-07-08T23:00:15Z biological_process owl:Class GO:0043651 biolink:NamedThing linoleic acid metabolic process The chemical reactions and pathways involving linoleic acid, an unsaturated omega-6 fatty acid that has the molecular formula C18H32O2. tmpzr1t_l9r_go_relaxed.owl linoleic acid metabolism Wikipedia:Linoleic_acid biological_process owl:Class GO:1904694 biolink:NamedThing negative regulation of vascular associated smooth muscle contraction Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular smooth muscle contraction|down-regulation of vascular smooth muscle contraction|downregulation of vascular smooth muscle contraction|down regulation of vascular smooth muscle contraction|inhibition of vascular smooth muscle contraction rph 2015-09-29T13:39:08Z biological_process owl:Class GO:0043486 biolink:NamedThing histone exchange The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits. tmpzr1t_l9r_go_relaxed.owl histone replacement|histone chaperone Note that this term also includes the exchange of sperm-specific histones or protamines with histones, occurring during spermatogenesis and fertilization. biological_process owl:Class GO:0036156 biolink:NamedThing inner dynein arm Inner arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. The structure of inner dynein arms is complex and may vary within the axoneme. Inner dynein arms are heteromeric, comprising 8 different heavy chains and various subunits. Inner and outer dynein arms have different functions in the generation of microtubule-based motility. tmpzr1t_l9r_go_relaxed.owl inner dynein arm complex bf 2012-03-21T01:24:54Z cellular_component owl:Class GO:1900198 biolink:NamedThing positive regulation of penicillin biosynthetic process Any process that activates or increases the frequency, rate or extent of penicillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of penicillin biosynthesis|positive regulation of penicillin formation|upregulation of penicillin biosynthetic process|up-regulation of penicillin anabolism|activation of penicillin anabolism|positive regulation of penicillin anabolism|positive regulation of penicillin biosynthesis|up-regulation of penicillin biosynthetic process|up regulation of penicillin anabolism|up regulation of penicillin formation|activation of penicillin biosynthesis|activation of penicillin biosynthetic process|activation of penicillin formation|up regulation of penicillin biosynthesis|upregulation of penicillin anabolism|positive regulation of penicillin synthesis|upregulation of penicillin formation|up-regulation of penicillin synthesis|up regulation of penicillin biosynthetic process|up-regulation of penicillin biosynthesis|up-regulation of penicillin formation|up regulation of penicillin synthesis|upregulation of penicillin synthesis|activation of penicillin synthesis di 2012-03-20T03:56:52Z biological_process owl:Class GO:0075281 biolink:NamedThing positive regulation of uredinium development Any process that activates, maintains or increases the frequency, rate or extent of uredinium development, a process that leads to the formation of a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075280 biolink:NamedThing regulation of uredinium development Any process that modulates the frequency, rate or extent of uredinium development, a process that leads to the formation of a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018505 biolink:NamedThing cis-1,2-dihydro-1,2-dihydroxynaphthalene dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydronaphthalene-1,2-diol + NAD+ = naphthalene-1,2-diol + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydroxy-1,2-dihydroxynaphthalene dehydrogenase activity|(+)-cis-naphthalene dihydrodiol dehydrogenase activity|cis-naphthalene dihydrodiol dehydrogenase activity|naphthalene dihydrodiol dehydrogenase activity|cis-1,2-dihydronaphthalene-1,2-diol:NAD+ 1,2-oxidoreductase activity|cis-dihydrodiol naphthalene dehydrogenase activity RHEA:11832|UM-BBD_enzymeID:e0122|EC:1.3.1.29|MetaCyc:1.3.1.29-RXN molecular_function owl:Class GO:0006627 biolink:NamedThing protein processing involved in protein targeting to mitochondrion The cleavage of peptide bonds in proteins, usually near the N terminus, contributing to the process of import into the mitochondrion. Several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl mitochondrial protein processing during import|mitochondrial processing biological_process owl:Class GO:1901747 biolink:NamedThing prephenate(2-) biosynthetic process The chemical reactions and pathways resulting in the formation of prephenate(2-). tmpzr1t_l9r_go_relaxed.owl prephenate biosynthesis|prephenate(2-) formation|prephenate(2-) biosynthesis|prephenate formation|prephenate(2-) synthesis|prephenate anabolism|prephenate synthesis|prephenate(2-) anabolism yaf 2013-01-14T10:13:57Z biological_process owl:Class GO:1901745 biolink:NamedThing prephenate(2-) metabolic process The chemical reactions and pathways involving prephenate(2-). tmpzr1t_l9r_go_relaxed.owl prephenate metabolism|prephenate(2-) metabolism yaf 2013-01-14T10:13:49Z biological_process owl:Class GO:0047301 biolink:NamedThing valine-3-methyl-2-oxovalerate transaminase activity Catalysis of the reaction: (S)-3-methyl-2-oxopentanoate + L-valine = 3-methyl-2-oxobutanoate + L-isoleucine. tmpzr1t_l9r_go_relaxed.owl valine--3-methyl-2-oxovalerate aminotransferase activity|valine-2-keto-methylvalerate aminotransferase activity|valine--isoleucine aminotransferase activity|valine-3-methyl-2-oxovalerate aminotransferase activity|L-valine:(S)-3-methyl-2-oxopentanoate aminotransferase activity|valine--isoleucine transaminase activity KEGG_REACTION:R02200|MetaCyc:2.6.1.32-RXN|EC:2.6.1.32|RHEA:11468 molecular_function owl:Class GO:0032079 biolink:NamedThing positive regulation of endodeoxyribonuclease activity Any process that activates or increases the frequency, rate or extent of endodeoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl upregulation of endodeoxyribonuclease activity|endodeoxyribonuclease activator|up-regulation of endodeoxyribonuclease activity|up regulation of endodeoxyribonuclease activity|stimulation of endodeoxyribonuclease activity|activation of endodeoxyribonuclease activity biological_process owl:Class GO:0036292 biolink:NamedThing DNA rewinding The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA. tmpzr1t_l9r_go_relaxed.owl single-stranded DNA bubble rewinding|DNA annealing|RPA-dependent DNA rewinding bf 2012-07-18T10:43:41Z biological_process owl:Class GO:0044835 biolink:NamedThing hydrogen generation via nitrogenase The chemical reactions and pathways resulting in the formation of H2 (dihydrogen) which involve a nitrogenase activity as one of the steps. This process is observed in cyanobacteria. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-19T14:59:15Z biological_process owl:Class GO:1902422 biolink:NamedThing hydrogen biosynthetic process The chemical reactions and pathways resulting in the formation of H2 (dihydrogen). tmpzr1t_l9r_go_relaxed.owl hydrogen formation|dihydrogen synthesis|hydrogen biosynthesis|molecular hydrogen biosynthesis|hydrogen production|H2 biosynthesis|hydrogen generation|hydrogen anabolism|hydrogen synthesis jl 2013-09-18T14:34:32Z biological_process owl:Class GO:0045942 biolink:NamedThing negative regulation of phosphorus utilization Any process that stops, prevents, or reduces the frequency, rate or extent of phosphorus utilization. tmpzr1t_l9r_go_relaxed.owl down regulation of phosphorus utilization|inhibition of phosphorus utilization|downregulation of phosphorus utilization|down-regulation of phosphorus utilization biological_process owl:Class GO:1904141 biolink:NamedThing positive regulation of microglial cell migration Any process that activates or increases the frequency, rate or extent of microglial cell migration. tmpzr1t_l9r_go_relaxed.owl upregulation of microglial cell migration|up-regulation of microglial cell migration|activation of microglial cell migration|up regulation of microglial cell migration nc 2015-04-13T09:07:11Z biological_process owl:Class GO:1903977 biolink:NamedThing positive regulation of glial cell migration Any process that activates or increases the frequency, rate or extent of glial cell migration. tmpzr1t_l9r_go_relaxed.owl activation of glia cell migration|up regulation of glial cell migration|upregulation of glial cell migration|upregulation of glia cell migration|positive regulation of glia cell migration|up regulation of glia cell migration|up-regulation of glial cell migration|up-regulation of glia cell migration|activation of glial cell migration nc 2015-03-02T15:13:43Z biological_process owl:Class GO:1900700 biolink:NamedThing positive regulation of o-orsellinic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of o-orsellinic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of o-orsellinic acid synthesis|up regulation of o-orsellinic acid formation|activation of o-orsellinic acid biosynthetic process|up-regulation of o-orsellinic acid anabolism|positive regulation of o-orsellinic acid formation|positive regulation of o-orsellinic acid anabolism|upregulation of o-orsellinic acid biosynthesis|up regulation of o-orsellinic acid synthesis|up-regulation of o-orsellinic acid biosynthetic process|up-regulation of o-orsellinic acid biosynthesis|up-regulation of o-orsellinic acid formation|positive regulation of o-orsellinic acid biosynthesis|activation of o-orsellinic acid biosynthesis|positive regulation of o-orsellinic acid synthesis|activation of o-orsellinic acid synthesis|up regulation of o-orsellinic acid biosynthesis|activation of o-orsellinic acid formation|up regulation of o-orsellinic acid biosynthetic process|up-regulation of o-orsellinic acid synthesis|upregulation of o-orsellinic acid biosynthetic process|up regulation of o-orsellinic acid anabolism|upregulation of o-orsellinic acid formation|activation of o-orsellinic acid anabolism|upregulation of o-orsellinic acid anabolism di 2012-05-22T04:57:16Z biological_process owl:Class GO:1901847 biolink:NamedThing nicotinate metabolic process The chemical reactions and pathways involving nicotinate. tmpzr1t_l9r_go_relaxed.owl nicotinate metabolism yaf 2013-01-28T11:23:48Z biological_process owl:Class GO:0072524 biolink:NamedThing pyridine-containing compound metabolic process The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyridine and derivative metabolic process|pyridine-containing compound metabolism mah 2011-01-04T03:21:47Z biological_process owl:Class GO:0036034 biolink:NamedThing mediator complex assembly The aggregation, arrangement and bonding together of a set of components to form a mediator complex. The mediator complex is a protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-31T05:18:11Z biological_process owl:Class GO:0044572 biolink:NamedThing [4Fe-4S] cluster assembly The incorporation of four iron atoms and four sulfur atoms into an iron-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl [4Fe-4S] cluster biosynthetic process|4Fe-4S cluster assembly jl 2012-04-18T03:19:23Z biological_process owl:Class GO:0097257 biolink:NamedThing leukotriene B4 12-hydroxy dehydrogenase activity Catalysis of the reaction: leukotriene B4 + NADP(+) = 12-oxo-leukotriene B4 + NADPH + H(+). tmpzr1t_l9r_go_relaxed.owl leukotriene B4 12-hydroxydehydrogenase activity RHEA:50608|Reactome:R-HSA-2161567 pr 2012-03-07T02:07:41Z molecular_function owl:Class GO:0034968 biolink:NamedThing histone lysine methylation The modification of a histone by addition of one or more methyl groups to a lysine residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016100 biolink:NamedThing monoterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of monoterpenoid compounds, terpenoids having a C10 skeleton. tmpzr1t_l9r_go_relaxed.owl monoterpenoid breakdown|monoterpenoid catabolism|monoterpenoid degradation biological_process owl:Class GO:0016098 biolink:NamedThing monoterpenoid metabolic process The chemical reactions and pathways involving monoterpenoid compounds, terpenoids having a C10 skeleton. tmpzr1t_l9r_go_relaxed.owl monoterpenoid metabolism biological_process owl:Class GO:0005875 biolink:NamedThing microtubule associated complex Any multimeric complex connected to a microtubule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045634 biolink:NamedThing regulation of melanocyte differentiation Any process that modulates the frequency, rate or extent of melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of melanophore differentiation biological_process owl:Class GO:0050932 biolink:NamedThing regulation of pigment cell differentiation Any process that modulates the frequency, rate or extent of pigmented cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071110 biolink:NamedThing histone biotinylation The modification of a histone by the addition of a biotinyl group. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-13T01:22:59Z biological_process owl:Class GO:0016570 biolink:NamedThing histone modification The covalent alteration of one or more amino acid residues within a histone protein. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Histone#Histone_modifications_in_chromatin_regulation biological_process owl:Class GO:1905901 biolink:NamedThing positive regulation of smooth muscle tissue development Any process that activates or increases the frequency, rate or extent of smooth muscle tissue development. tmpzr1t_l9r_go_relaxed.owl up regulation of smooth muscle tissue development|activation of smooth muscle tissue development|upregulation of smooth muscle tissue development|up-regulation of smooth muscle tissue development bhm 2017-02-01T14:31:33Z biological_process owl:Class GO:0052933 biolink:NamedThing alcohol dehydrogenase (cytochrome c(L)) activity Catalysis of the reaction: 2 [Fe(III)cytochrome cL] + a primary alcohol = 2 [Fe(II)cytochrome cL] + an aldehyde + 2 H+. tmpzr1t_l9r_go_relaxed.owl 2-chloroethanol cytochrome-c oxidoreductase activity|alcohol:cytochrome c(L) oxidoreductase activity|methanol dehydrogenase activity|ethanol cytochrome-c oxidoreductase activity|methanol ferricytochrome-c oxidoreductase activity https://github.com/geneontology/go-ontology/issues/21412 KEGG_REACTION:R09128|KEGG_REACTION:R01146|MetaCyc:RXN-2861|MetaCyc:RXN-11332|KEGG_REACTION:R09127|RHEA:51004|EC:1.1.2.7 GO:0052931|GO:0052930|GO:0052932 molecular_function owl:Class GO:0016898 biolink:NamedThing oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a cytochrome molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.1.2.- molecular_function owl:Class GO:0033895 biolink:NamedThing ribonuclease [poly-(U)-specific] activity Catalysis of the endonucleolytic cleavage of poly(U) to fragments terminated by 3'-hydroxy and 5'-phosphate groups. tmpzr1t_l9r_go_relaxed.owl ribonuclease (uracil-specific) activity|uracil-specific RNase activity|uracil-specific endoribonuclease activity EC:3.1.26.9 molecular_function owl:Class GO:0043977 biolink:NamedThing histone H2A-K5 acetylation The modification of histone H2A by the addition of an acetyl group to a lysine residue at position 5 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2A acetylation at K5 biological_process owl:Class GO:0043968 biolink:NamedThing histone H2A acetylation The modification of histone H2A by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099629 biolink:NamedThing postsynaptic specialization of symmetric synapse A network of proteins within and adjacent to the postsynaptic membrane of a symmetric synapse, consisting of anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components that spatially and functionally organize the neurotransmitter receptors at the synapse. This structure is not as thick or electron dense as the postsynaptic densities found in asymmetric synapses. tmpzr1t_l9r_go_relaxed.owl postsynaptic density of inhibitory synapse cellular_component owl:Class GO:0099572 biolink:NamedThing postsynaptic specialization A network of proteins within and adjacent to the postsynaptic membrane. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050970 biolink:NamedThing detection of electrical stimulus involved in magnetoreception The series of events that contribute to magnetoception in which an electrical stimulus is received and converted into a molecular signal. The stimulus is in the form of an induced electric field resulting from movement in a magnetic field. tmpzr1t_l9r_go_relaxed.owl magnetoception, sensory transduction of electrical stimulus|magnetoreception, sensory detection of electrical stimulus|sensory transduction of electrical stimulus during magnetoreception|sensory detection of electrical stimulus during magnetoreception|magnetoreception, sensory transduction of electrical stimulus|detection of electrical stimulus during magnetoreception|magnetoreception, detection of electrical stimulus biological_process owl:Class GO:1905155 biolink:NamedThing positive regulation of membrane invagination Any process that activates or increases the frequency, rate or extent of membrane invagination. tmpzr1t_l9r_go_relaxed.owl up-regulation of membrane invagination|up regulation of membrane invagination|upregulation of membrane invagination|activation of membrane invagination bf 2016-04-18T15:44:12Z biological_process owl:Class GO:0071592 biolink:NamedThing nicotinic acid riboside biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinic acid riboside, the product of the formation of a glycosidic bond between ribose and nicotinic acid. tmpzr1t_l9r_go_relaxed.owl nicotinic acid riboside formation|D-ribosylnicotinic acid biosynthetic process|nicotinic acid riboside biosynthesis|nicotinic acid riboside anabolism|nicotinic acid riboside synthesis mah 2010-01-29T12:01:25Z biological_process owl:Class GO:0071591 biolink:NamedThing nicotinic acid riboside metabolic process The chemical reactions and pathways involving nicotinic acid riboside, the product of the formation of a glycosidic bond between ribose and nicotinic acid. tmpzr1t_l9r_go_relaxed.owl nicotinic acid riboside metabolism|D-ribosylnicotinic acid metabolic process mah 2010-01-29T11:50:42Z biological_process owl:Class GO:0021535 biolink:NamedThing cell migration in hindbrain The orderly movement of a cell that will reside in the hindbrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097737 biolink:NamedThing acquisition of mycelium reproductive competence A maturation process by which an organism acquires the ability to reproduce. In fungi, reproductive competence only occurs in a population of filamentous cells that form a mycelium. tmpzr1t_l9r_go_relaxed.owl mycelium developmental competence pr 2016-10-14T16:36:09Z biological_process owl:Class GO:0003401 biolink:NamedThing axis elongation The developmental growth that results in the elongation of a line that defines polarity or symmetry in an anatomical structure. tmpzr1t_l9r_go_relaxed.owl elongation of an axis dph 2009-12-21T01:12:15Z biological_process owl:Class GO:0051793 biolink:NamedThing medium-chain fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of any fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium chain fatty acid catabolism|medium-chain fatty acid catabolism|medium-chain fatty acid degradation|medium-chain fatty acid breakdown|medium chain fatty acid catabolic process biological_process owl:Class GO:0051791 biolink:NamedThing medium-chain fatty acid metabolic process The chemical reactions and pathways involving medium-chain fatty acids, any fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium-chain fatty acid metabolism|medium chain fatty acid metabolic process|medium chain fatty acid metabolism biological_process owl:Class GO:0120118 biolink:NamedThing flagella connector A mobile transmembrane junction at the tip of the flagellum of some kinetoplastid species linking the tip of a new growing flagellum to an older flagellum. tmpzr1t_l9r_go_relaxed.owl Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. krc 2017-12-11T22:24:17Z cellular_component owl:Class GO:0030054 biolink:NamedThing cell junction A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_junction cellular_component owl:Class GO:0036431 biolink:NamedThing dCMP kinase activity Catalysis of the reaction: ATP + dCMP = ADP + dCDP. tmpzr1t_l9r_go_relaxed.owl ATP:dCMP phosphotransferase activity MetaCyc:RXN-7913|RHEA:25094|MetaCyc:RXN-11831|KEGG_REACTION:R01665 bf 2013-09-16T14:11:56Z molecular_function owl:Class GO:2001205 biolink:NamedThing negative regulation of osteoclast development Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast development. tmpzr1t_l9r_go_relaxed.owl negative regulation of osteoclast cell development yaf 2011-11-10T10:59:06Z biological_process owl:Class GO:0102232 biolink:NamedThing acrolein reductase activity Catalysis of the reaction: acrolein + NADPH + H+ <=> propanal + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12281 molecular_function owl:Class GO:0070571 biolink:NamedThing negative regulation of neuron projection regeneration Any process that stops, prevents, or reduces the frequency, rate or extent of neuron projection regeneration, the regrowth of neuronal processes such as axons or dendrites following their loss or damage. tmpzr1t_l9r_go_relaxed.owl growth cone collapse mah 2009-04-15T01:43:19Z biological_process owl:Class GO:0036219 biolink:NamedThing GTP diphosphatase activity Catalysis of the reaction: GTP + H2O = GMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl GTP diphosphohydrolase activity|GTP diphosphohydrolase (diphosphate-forming); guanosine 5'-triphosphate pyrophosphohydrolase RHEA:29391|KEGG_REACTION:R00426 bf 2012-05-08T01:47:59Z molecular_function owl:Class GO:0097019 biolink:NamedThing neurotransmitter receptor catabolic process The chemical reactions and pathways resulting in the breakdown of neurotransmitter receptors. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor degradation|neurotransmitter receptor catabolism|neurotransmitter receptor breakdown pr 2011-03-23T04:16:11Z biological_process owl:Class GO:0045213 biolink:NamedThing neurotransmitter receptor metabolic process The chemical reactions and pathways involving neurotransmitter receptors. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor metabolism biological_process owl:Class GO:0009124 biolink:NamedThing nucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside monophosphate anabolism|nucleoside monophosphate formation|nucleoside monophosphate synthesis|nucleoside monophosphate biosynthesis biological_process owl:Class GO:0015410 biolink:NamedThing ABC-type manganese transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mn2+(out) = ADP + phosphate + Mn2+(in). tmpzr1t_l9r_go_relaxed.owl ABC-type Mn(2+) transporter|manganese-transporting ATPase activity|manganese ABC transporter|ATPase-coupled manganese transmembrane transporter activity|manganese transmembrane transporter activity, phosphorylative mechanism|ATP-dependent manganese transmembrane transporter activity MetaCyc:3.6.3.35-RXN|EC:7.2.2.5|RHEA:17365|Reactome:R-HSA-5692462 molecular_function owl:Class GO:0005452 biolink:NamedThing inorganic anion exchanger activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: inorganic anion A(out) + inorganic anion B(in) = inorganic anion A(in) + inorganic anion B(out). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-425577|Reactome:R-HSA-425482|Reactome:R-HSA-5656248|Reactome:R-HSA-1237038|Reactome:R-HSA-5627737|Reactome:R-HSA-427666|Reactome:R-HSA-1247665 molecular_function owl:Class GO:0050638 biolink:NamedThing taxadien-5-alpha-ol O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + taxa-4(20),11-dien-5alpha-ol = CoA + taxa-4(20),11-dien-5alpha-yl acetate. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:taxa-4(20),11-dien-5alpha-ol O-acetyltransferase activity|taxa-4(20),11(12)-dien-5alpha-ol-O-acetyltransferase activity|taxadien-5alpha-ol O-acetyltransferase activity|taxadien-5a-ol O-acetyltransferase activity|acetyl coenzyme A: taxa-4(20),11(12)-dien-5alpha-ol O-acetyl transferase activity|acetyl coenzyme A:taxa-4(20),11(12)-dien-5-alpha-ol O-acetyl transferase activity|taxadienol acetyltransferase activity MetaCyc:2.3.1.162-RXN|RHEA:22028|KEGG_REACTION:R06307|EC:2.3.1.162 molecular_function owl:Class GO:0016413 biolink:NamedThing O-acetyltransferase activity Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046004 biolink:NamedThing positive regulation of syncytial blastoderm mitotic cell cycle Any process that activates or increases the rate or extent of progression through the syncytial blastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of progression through syncytial blastoderm mitotic cell cycle|up-regulation of progression through syncytial blastoderm mitotic cell cycle|up regulation of progression through syncytial blastoderm mitotic cell cycle|positive regulation of syncytial blastoderm cell cycle progression|positive regulation of progression through syncytial blastoderm mitotic cell cycle|activation of progression through syncytial blastoderm mitotic cell cycle|upregulation of progression through syncytial blastoderm mitotic cell cycle biological_process owl:Class GO:0045977 biolink:NamedThing positive regulation of mitotic cell cycle, embryonic Any process that activates or increases the frequency, rate or extent of progression through the embryonic mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of embryonic mitotic cell cycle|activation of mitotic cell cycle, embryonic|positive regulation of progression through embryonic mitotic cell cycle|up-regulation of mitotic cell cycle, embryonic|stimulation of mitotic cell cycle, embryonic|upregulation of mitotic cell cycle, embryonic|positive regulation of embryonic mitotic cell cycle progression|up regulation of mitotic cell cycle, embryonic biological_process owl:Class GO:1903085 biolink:NamedThing regulation of sinapate ester biosynthetic process Any process that modulates the frequency, rate or extent of sinapate ester biosynthesis. tmpzr1t_l9r_go_relaxed.owl regulation of sinapate ester synthesis|regulation of sinapate ester biosynthesis|regulation of sinapate ester anabolism|regulation of sinapate ester formation tb 2014-05-30T22:00:12Z biological_process owl:Class GO:1905818 biolink:NamedThing regulation of chromosome separation Any process that modulates the frequency, rate or extent of chromosome separation. tmpzr1t_l9r_go_relaxed.owl regulation of rDNA separation|regulation of chromatid release bhm 2017-01-13T13:55:18Z biological_process owl:Class GO:0060046 biolink:NamedThing regulation of acrosome reaction Any process that modulates the frequency, rate or extent of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072055 biolink:NamedThing renal cortex development The process whose specific outcome is the progression of the renal cortex over time, from its formation to the mature structure. The renal cortex is the outer region of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:01:12Z biological_process owl:Class GO:0008121 biolink:NamedThing ubiquinol-cytochrome-c reductase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+. tmpzr1t_l9r_go_relaxed.owl ubiquinone-cytochrome c reductase activity|electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity|ubiquinol-cytochrome c1 oxidoreductase activity|mitochondrial electron transport complex III|cytochrome a3/copper complex|complex III (mitochondrial electron transport) activity|soluble cytochrome b562|ubiquinone-cytochrome c oxidoreductase activity|ubiquinol:ferricytochrome-c oxidoreductase activity|ubiquinone--cytochrome-c oxidoreductase activity|electron transporter, transferring electrons within cytochrome c oxidase complex activity|cytochrome a|ubiquinol-cytochrome c oxidoreductase activity|ubiquinol-cytochrome c2 reductase activity|cytochrome c1|ubiquinol-cytochrome c-2 oxidoreductase activity|cytochrome b562|cytochrome b566|cytochrome https://github.com/geneontology/go-ontology/issues/20616|https://github.com/geneontology/go-ontology/issues/21275 RHEA:11484|EC:7.1.1.8|Reactome:R-HSA-164651|MetaCyc:1.10.2.2-RXN GO:0045153|GO:0045154 molecular_function owl:Class GO:0044752 biolink:NamedThing response to human chorionic gonadotropin Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a human chorionic gonadotropin stimulus. tmpzr1t_l9r_go_relaxed.owl response to human chorionic gonadotropin stimulus jl 2012-11-20T16:21:08Z biological_process owl:Class GO:0034698 biolink:NamedThing response to gonadotropin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus. tmpzr1t_l9r_go_relaxed.owl response to gonadotropin stimulus biological_process owl:Class GO:0048083 biolink:NamedThing negative regulation of adult chitin-containing cuticle pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl down regulation of adult chitin-containing cuticle pigmentation|downregulation of adult chitin-containing cuticle pigmentation|down-regulation of adult chitin-containing cuticle pigmentation|inhibition of adult chitin-containing cuticle pigmentation biological_process owl:Class GO:0045800 biolink:NamedThing negative regulation of chitin-based cuticle tanning Any process that stops, prevents, or reduces the frequency, rate or extent of chitin-based cuticular tanning. tmpzr1t_l9r_go_relaxed.owl down-regulation of cuticle tanning|negative regulation of cuticle tanning|inhibition of cuticle tanning|down regulation of cuticle tanning|negative regulation of cuticle hardening|downregulation of cuticle tanning biological_process owl:Class GO:0030311 biolink:NamedThing poly-N-acetyllactosamine biosynthetic process The chemical reactions and pathways resulting in the formation of poly-N-acetyllactosamine, a carbohydrate composed of N-acetyllactosamine repeats (Gal-beta-1,4-GlcNAc-beta-1,3)n. tmpzr1t_l9r_go_relaxed.owl poly-N-acetyllactosamine biosynthesis|poly-N-acetyllactosamine synthesis|poly-N-acetyllactosamine formation|poly-N-acetyllactosamine anabolism biological_process owl:Class GO:0003012 biolink:NamedThing muscle system process A organ system process carried out at the level of a muscle. Muscle tissue is composed of contractile cells or fibers. tmpzr1t_l9r_go_relaxed.owl muscle physiological process biological_process owl:Class GO:0035998 biolink:NamedThing 7,8-dihydroneopterin 3'-triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 7,8-dihydroneopterin 3'-triphosphate. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydroneopterin 3'-triphosphate synthesis|7,8-dihydroneopterin 3'-triphosphate formation|7,8-dihydroneopterin 3'-triphosphate anabolism|7,8-dihydroneopterin 3'-triphosphate biosynthesis UniPathway:UPA00848 bf 2011-09-02T01:15:35Z biological_process owl:Class GO:0060625 biolink:NamedThing regulation of protein deneddylation Any process that modulates the rate, frequency, or extent of protein deneddylation, the removal of a ubiquitin-like protein of the NEDD8 type from a protein. tmpzr1t_l9r_go_relaxed.owl regulation of cullin deneddylation dph 2009-05-18T02:22:07Z GO:0060626 biological_process owl:Class GO:0075287 biolink:NamedThing positive regulation of sporangiospore formation Any process that activates, maintains or increases the frequency, rate or extent of sporangiospore formation, a process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905033 biolink:NamedThing positive regulation of membrane repolarization during cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of membrane repolarization during cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl up-regulation of membrane repolarization during cardiac muscle cell action potential|upregulation of membrane repolarization during cardiac muscle cell action potential|up regulation of membrane repolarization during cardiac muscle cell action potential|activation of membrane repolarization during cardiac muscle cell action potential rph 2016-03-07T10:24:53Z biological_process owl:Class GO:0033689 biolink:NamedThing negative regulation of osteoblast proliferation Any process that stops, prevents or reduces the rate or extent of osteoblast proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of osteoblast proliferation|inhibition of osteoblast proliferation|down-regulation of osteoblast proliferation|downregulation of osteoblast proliferation biological_process owl:Class GO:0018772 biolink:NamedThing trioxoheptanoate hydrolase activity Catalysis of the reaction: 2,4,6-trioxoheptanoate + H2O = acetylpyruvate + acetate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R306-RXN|UM-BBD_reactionID:r0094 molecular_function owl:Class GO:0036178 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to neutral pH The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a neutral pH (pH close to 7) stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-29T01:43:47Z biological_process owl:Class GO:1905667 biolink:NamedThing negative regulation of protein localization to endosome Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to endosome. tmpzr1t_l9r_go_relaxed.owl downregulation of protein localization to endosome|down-regulation of protein localization in endosome|down regulation of protein localisation in endosome|down regulation of protein localization in endosome|downregulation of protein localization in endosome|down regulation of protein localization to endosome|inhibition of protein localisation in endosome|inhibition of protein localization to endosome|inhibition of protein localization in endosome|downregulation of protein localisation in endosome|down-regulation of protein localisation in endosome|negative regulation of protein localisation in endosome|negative regulation of protein localization in endosome|down-regulation of protein localization to endosome bc 2016-11-11T11:19:09Z biological_process owl:Class GO:0089719 biolink:NamedThing RHG protein domain binding Binding to an RHG (reaper/hid/grimm) domain/motif (AKA iap binding motif). tmpzr1t_l9r_go_relaxed.owl RHG domain binding|iap binding domain binding|inhibitor of apoptosis binding domain binding|reaper hid grim domain binding molecular_function owl:Class GO:1905024 biolink:NamedThing regulation of membrane repolarization during ventricular cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of membrane repolarization during ventricular cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl regulation of ventricular repolarization|regulation of electrocardiogram T wave|regulation of regulation of ventricular cardiac muscle repolarization rph 2016-03-04T11:19:02Z biological_process owl:Class GO:0005996 biolink:NamedThing monosaccharide metabolic process The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. tmpzr1t_l9r_go_relaxed.owl monosaccharide metabolism biological_process owl:Class GO:0032340 biolink:NamedThing positive regulation of inhibin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of inhibin from a cell. tmpzr1t_l9r_go_relaxed.owl upregulation of inhibin secretion|up-regulation of inhibin secretion|activation of inhibin secretion|up regulation of inhibin secretion|stimulation of inhibin secretion biological_process owl:Class GO:0051108 biolink:NamedThing carnitine-CoA ligase activity Catalysis of the reaction: D-carnitine + CoA + ATP = AMP + diphosphate + D-carnitinyl-CoA. tmpzr1t_l9r_go_relaxed.owl carnitine synthetase activity|crotonobetaine/carnitine-CoA ligase activity RHEA:30543|MetaCyc:DCARNCOALIG-RXN molecular_function owl:Class GO:0034266 biolink:NamedThing isopentenyl adenine catabolic process The chemical reactions and pathways resulting in the breakdown of the cytokinin 6-isopentenyladenine. tmpzr1t_l9r_go_relaxed.owl isopentenyl adenine degradation|isopentenyl adenine breakdown|isopentenyl adenine catabolism|isopentenyladenine catabolic process biological_process owl:Class GO:0009823 biolink:NamedThing cytokinin catabolic process The chemical reactions and pathways resulting in the breakdown of cytokinins, a class of adenine-derived compounds that can function in plants as plant growth regulators. tmpzr1t_l9r_go_relaxed.owl cytokinin catabolism|cytokinin degradation|cytokinin breakdown biological_process owl:Class GO:0097011 biolink:NamedThing cellular response to granulocyte macrophage colony-stimulating factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to GM-CSF stimulus pr 2011-03-21T05:25:06Z biological_process owl:Class GO:0097012 biolink:NamedThing response to granulocyte macrophage colony-stimulating factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to granulocyte macrophage colony-stimulating factor stimulus|response to GM-CSF pr 2011-03-22T01:12:15Z biological_process owl:Class GO:0098730 biolink:NamedThing male germline stem cell symmetric division The symmetric division of a male germline stem cell to produce two male germline stem cells. An example of this is found in mammalian spermatogonial stem cells, some proportion of which divide symmetrically, so amplifying the population. The choice between asymmetric and symmetric division in this case appears to be internal and stochastic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098729 biolink:NamedThing germline stem cell symmetric division Division of a germline stem cell to produce two germline stem cells of the same type as the parent. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045682 biolink:NamedThing regulation of epidermis development Any process that modulates the frequency, rate or extent of epidermis development. tmpzr1t_l9r_go_relaxed.owl regulation of epidermal development|regulation of hypodermis development biological_process owl:Class GO:0048663 biolink:NamedThing neuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron. tmpzr1t_l9r_go_relaxed.owl neuron lineage restriction|neuronal lineage restriction GO:0042055 biological_process owl:Class GO:0034296 biolink:NamedThing zygospore formation The process in which zygospores are formed. Zygospores are characteristic of the zygomycete fungi (phylum Zygomycota) thick-walled and darkly colored, and usually heavily ornamented as well, with many spines or ridges. It is formed between two specialized organs called suspensors, which are themselves usually heavily ornamented, one from each mating partner. The zygospore forms between them and then breaks away. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043935 biolink:NamedThing sexual sporulation resulting in formation of a cellular spore The formation of spores derived from the products of meiosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901491 biolink:NamedThing negative regulation of lymphangiogenesis Any process that stops, prevents or reduces the frequency, rate or extent of lymphangiogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphangiogenesis|downregulation of lymph vessel formation|inhibition of lymphangiogenesis|down-regulation of lymph vessel formation|down regulation of lymphangiogenesis|down regulation of lymph vessel formation|inhibition of lymph vessel formation|down-regulation of lymphangiogenesis|negative regulation of lymph vessel formation dph 2012-10-15T13:08:21Z biological_process owl:Class GO:0007318 biolink:NamedThing pole plasm protein localization Any process in which a protein is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl pole plasm protein localisation|oocyte pole plasm protein localization|establishment and maintenance of pole plasm protein localization GO:0048115 biological_process owl:Class GO:0017182 biolink:NamedThing peptidyl-diphthamide metabolic process The chemical reactions and pathways involving peptidyl-diphthamide, a modified histidine residue. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthamide metabolism biological_process owl:Class GO:0046091 biolink:NamedThing deoxyadenosine biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyadenosine biosynthesis|deoxyadenosine anabolism|deoxyadenosine formation|deoxyadenosine synthesis biological_process owl:Class GO:0046090 biolink:NamedThing deoxyadenosine metabolic process The chemical reactions and pathways involving deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyadenosine metabolism biological_process owl:Class GO:0019624 biolink:NamedThing atrazine catabolic process to isopropylamine The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into isopropylamine. tmpzr1t_l9r_go_relaxed.owl atrazine degradation to isopropylamine|atrazine breakdown to isopropylamine biological_process owl:Class GO:0046187 biolink:NamedThing acetaldehyde catabolic process The chemical reactions and pathways resulting in the breakdown of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol. tmpzr1t_l9r_go_relaxed.owl acetaldehyde catabolism|acetaldehyde degradation|acetaldehyde breakdown biological_process owl:Class GO:0100002 biolink:NamedThing negative regulation of protein kinase activity by protein phosphorylation Any protein phosphorylation process that negatively regulates protein kinase activity. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0006468 biolink:NamedThing protein phosphorylation The process of introducing a phosphate group on to a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphorylation biological_process owl:Class GO:0030350 biolink:NamedThing iron-responsive element binding Binding to an iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins. tmpzr1t_l9r_go_relaxed.owl IRE binding molecular_function owl:Class GO:1905211 biolink:NamedThing negative regulation of fibroblast chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast chemotaxis. tmpzr1t_l9r_go_relaxed.owl inhibition of fibroblast chemotaxis|downregulation of fibroblast chemotaxis|down regulation of fibroblast chemotaxis|down-regulation of fibroblast chemotaxis sl 2016-06-02T20:08:51Z biological_process owl:Class GO:0009180 biolink:NamedThing purine ribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside diphosphate formation|purine ribonucleoside diphosphate biosynthesis|purine ribonucleoside diphosphate anabolism|purine ribonucleoside diphosphate synthesis biological_process owl:Class GO:0044523 biolink:NamedThing envenomation resulting in damage of muscle extracellular matrix in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, damaging the extracellular matrix of muscle cells and ultimately resulting in muscle necrosis in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in damage of muscle extracellular matrix causing muscle necrosis in other organism jl 2012-02-27T12:40:32Z biological_process owl:Class GO:1905396 biolink:NamedThing cellular response to flavonoid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a flavonoid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-08-24T15:01:02Z biological_process owl:Class GO:1900769 biolink:NamedThing fonsecin biosynthetic process The chemical reactions and pathways resulting in the formation of fonsecin. tmpzr1t_l9r_go_relaxed.owl fonsecin synthesis|fonsecin formation|fonsecin anabolism|fonsecin biosynthesis di 2012-06-04T09:21:49Z biological_process owl:Class GO:0042671 biolink:NamedThing retinal cone cell fate determination The process in which a cell becomes capable of differentiating autonomously into a retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043703 biolink:NamedThing photoreceptor cell fate determination The process in which a cell becomes capable of differentiating autonomously into a photoreceptor cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000322 biolink:NamedThing regulation of glucocorticoid receptor signaling pathway Any process that modulates the frequency, rate or extent of glucocorticoid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of glucocorticoid receptor signalling pathway vk 2011-01-18T04:38:10Z biological_process owl:Class GO:0102687 biolink:NamedThing UDP-glucose:dihydrozeatin 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + dihydrozeatin <=> H+ + dihydrozeatin-7-N-glucose + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4724 molecular_function owl:Class GO:1903177 biolink:NamedThing negative regulation of tyrosine 3-monooxygenase activity Any process that stops, prevents or reduces the frequency, rate or extent of tyrosine 3-monooxygenase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of tyrosine 3-hydroxylase activity|down regulation of L-tyrosine hydroxylase activity|inhibition of tyrosine 3-hydroxylase activity|inhibition of tyrosine 3-monooxygenase activity|down-regulation of L-tyrosine hydroxylase activity|down-regulation of tyrosine hydroxylase activity|down-regulation of tyrosine 3-hydroxylase activity|downregulation of tyrosine 3-hydroxylase activity|downregulation of tyrosine hydroxylase activity|down regulation of tyrosine 3-monooxygenase activity|negative regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|downregulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|inhibition of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|down-regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|downregulation of tyrosine 3-monooxygenase activity|negative regulation of tyrosine hydroxylase activity|inhibition of L-tyrosine hydroxylase activity|down regulation of tyrosine hydroxylase activity|down-regulation of tyrosine 3-monooxygenase activity|inhibition of tyrosine hydroxylase activity|down regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|downregulation of L-tyrosine hydroxylase activity|negative regulation of L-tyrosine hydroxylase activity|down regulation of tyrosine 3-hydroxylase activity bf 2014-07-14T10:39:15Z biological_process owl:Class GO:1903176 biolink:NamedThing regulation of tyrosine 3-monooxygenase activity Any process that modulates the frequency, rate or extent of tyrosine 3-monooxygenase activity. tmpzr1t_l9r_go_relaxed.owl regulation of L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|regulation of L-tyrosine hydroxylase activity|regulation of tyrosine hydroxylase activity|regulation of tyrosine 3-hydroxylase activity bf 2014-07-14T10:39:09Z biological_process owl:Class GO:0086096 biolink:NamedThing adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process An adrenergic receptor signaling pathway which contributes to a circulatory system process carried out by the heart, where the activated adrenergic receptor transmits the signal by Gi-mediated inhibition of adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl Gi-coupled adrenergic receptor signaling pathway involved in heart process|cardiac adrenergic receptor signaling pathway via inhibition of adenylate cyclase activity|Gi-coupled Beta2-AR signaling pathway involved in heart process|G-inhibitory-coupled Beta2AR signaling pathway involved in heart process Although Beta1-adrenergic receptors couple exclusively to the Gs protein, Beta2-adrenergic receptors couple to both Gs and Gi proteins. Coupling to Gi proteins may localize the Gs-mediated signaling. bf biological_process owl:Class GO:0071881 biolink:NamedThing adenylate cyclase-inhibiting adrenergic receptor signaling pathway The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl adrenergic receptor, adenylate cyclase inhibiting pathway|inhibition of adenylate cyclase activity by adrenergic receptor signalling pathway|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|adrenergic receptor, adenylyl cyclase inhibiting pathway mah 2010-09-13T04:22:53Z biological_process owl:Class GO:0002542 biolink:NamedThing Factor XII activation Any process that activates Factor XII (Hageman factor). Factor XII is a protein synthesized by the liver that circulates in an inactive form until it encounters collagen or basement membrane or activated platelets (as occurs at the site of endothelial injury). Factor XII then undergoes a conformational change (becoming factor XIIa), exposing an active serine center that can subsequently cleave protein substrates and activate a variety of mediator systems. Factor XII is a participant in the clotting cascade as well as the kinin cascade. tmpzr1t_l9r_go_relaxed.owl Hageman factor activation biological_process owl:Class GO:0047162 biolink:NamedThing 17-O-deacetylvindoline O-acetyltransferase activity Catalysis of the reaction: (1R,9R,10S,11R,12R,19R)-12-ethyl-10,11-dihydroxy-5-methoxy-10-(methoxycarbonyl)-8-methyl-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2(7),3,5,13-tetraen-16-ium + acetyl-CoA = (1R,9R,10S,11R,12R,19R)-11-(acetyloxy)-12-ethyl-10-hydroxy-5-methoxy-10-(methoxycarbonyl)-8-methyl-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2(7),3,5,13-tetraen-16-ium + CoA. tmpzr1t_l9r_go_relaxed.owl DAT activity|acetyl-CoA:deacetylvindoline 4-O-acetyltransferase activity|acetylcoenzyme A-deacetylvindoline 4-O-acetyltransferase activity|acetyl-CoA-17-O-deacetylvindoline 17-O-acetyltransferase activity|deacetylvindoline O-acetyltransferase activity|acetylcoenzyme A:deacetylvindoline 4-O-acetyltransferase activity|17-O-deacetylvindoline-17-O-acetyltransferase activity|deacetylvindoline acetyltransferase activity|acetylcoenzyme A:deacetylvindoline O-acetyltransferase activity|acetyl-CoA:17-O-deacetylvindoline 17-O-acetyltransferase activity RHEA:24496|MetaCyc:2.3.1.107-RXN|EC:2.3.1.107|KEGG_REACTION:R03230 molecular_function owl:Class GO:0070046 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-3 complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 3 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (Stx3, Snap25, Vamp2)|Stx3-Snap25-Vamp2 complex cellular_component owl:Class GO:2001020 biolink:NamedThing regulation of response to DNA damage stimulus Any process that modulates the frequency, rate or extent of response to DNA damage stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to DNA damage stimulus|regulation of cellular DNA damage response|regulation of DNA damage response|regulation of response to genotoxic stress yaf 2011-08-19T10:20:25Z biological_process owl:Class GO:0000798 biolink:NamedThing nuclear cohesin complex A cohesin complex required for cohesion between sister chromatids that remain in the nucleus. tmpzr1t_l9r_go_relaxed.owl Note that this term and its children should be used to annotate gene products found in cohesin complexes in organisms that undergo closed mitosis (i.e. where the nuclear envelope does not break down, as in fungi). For organisms in which the nuclear envelope breaks down during mitosis, the parent should be used. cellular_component owl:Class GO:1902484 biolink:NamedThing Sertoli cell apoptotic process Any apoptotic process in a Sertoli cell. tmpzr1t_l9r_go_relaxed.owl Sertoli cell apoptosis pr 2013-11-06T11:27:34Z biological_process owl:Class GO:1904019 biolink:NamedThing epithelial cell apoptotic process Any apoptotic process in an epithelial cell. tmpzr1t_l9r_go_relaxed.owl epitheliocyte apoptosis|epitheliocyte apoptotic process|epithelial cell apoptosis sl 2015-03-06T22:27:17Z biological_process owl:Class GO:0046375 biolink:NamedThing K antigen metabolic process The chemical reactions and pathways involving K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens. tmpzr1t_l9r_go_relaxed.owl K antigen metabolism biological_process owl:Class GO:1990074 biolink:NamedThing polyuridylation-dependent mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of uridylyl residues (polyuridylation) at the 3' end of the target mRNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20568 tb 2013-04-16T22:51:46Z biological_process owl:Class GO:0034620 biolink:NamedThing cellular response to unfolded protein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. tmpzr1t_l9r_go_relaxed.owl heat shock protein activity Note that this term should not be confused with 'unfolded protein response ; GO:0030968', which refers to the signaling pathways that respond to the presence of unfolded proteins in the ER. biological_process owl:Class GO:0006986 biolink:NamedThing response to unfolded protein Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. tmpzr1t_l9r_go_relaxed.owl heat shock protein activity Note that this term should not be confused with 'unfolded protein response ; GO:0030968', which refers to one specific response to the presence of unfolded proteins in the ER. biological_process owl:Class GO:0099646 biolink:NamedThing neurotransmitter receptor transport, plasma membrane to endosome Vesicle-mediated transport of a neurotransmitter receptor vesicle from the plasma membrane to the endosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036010 biolink:NamedThing protein localization to endosome A process in which a protein is transported to, or maintained in, a location within an endosome. tmpzr1t_l9r_go_relaxed.owl protein localisation in endosome|protein localization in endosome bf 2011-10-06T02:42:18Z biological_process owl:Class GO:0003143 biolink:NamedThing embryonic heart tube morphogenesis The process in which the anatomical structures of the embryonic heart tube are generated and organized. The embryonic heart tube is an epithelial tube that will give rise to the mature heart. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T04:21:17Z biological_process owl:Class GO:0004112 biolink:NamedThing cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005935 biolink:NamedThing cellular bud neck The constriction between the mother cell and daughter cell (bud) in an organism that reproduces by budding. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015371 biolink:NamedThing galactose:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: galactose(out) + Na+(out) = glucose(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901978 biolink:NamedThing positive regulation of cell cycle checkpoint Any process that activates or increases the frequency, rate or extent of cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl positive regulation of G1/S transition checkpoint|activation of cell cycle checkpoint|up regulation of cell cycle checkpoint|upregulation of cell cycle checkpoint|positive regulation of G1/S checkpoint|up-regulation of cell cycle checkpoint jl 2013-03-06T15:10:34Z GO:2001052 biological_process owl:Class GO:0048677 biolink:NamedThing axon extension involved in regeneration Long distance growth of a single axon process involved in regeneration of the neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090310 biolink:NamedThing negative regulation of DNA methylation-dependent heterochromatin assembly Any process that decreases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. tmpzr1t_l9r_go_relaxed.owl negative regulation of methylation-dependent chromatin silencing tb 2010-04-09T02:12:53Z biological_process owl:Class GO:1900675 biolink:NamedThing regulation of F-9775B biosynthetic process Any process that modulates the frequency, rate or extent of F-9775B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of F-9775B formation|regulation of F-9775B anabolism|regulation of F-9775B biosynthesis|regulation of F-9775B synthesis di 2012-05-22T04:26:31Z biological_process owl:Class GO:1900732 biolink:NamedThing regulation of polyketide biosynthetic process Any process that modulates the frequency, rate or extent of polyketide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of polyketide anabolism|regulation of polyketide formation|regulation of polyketide biosynthesis|regulation of polyketide synthesis di 2012-05-26T01:29:40Z biological_process owl:Class GO:2000937 biolink:NamedThing negative regulation of cellotriose catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellotriose catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellotriose catabolism tt 2011-08-01T12:45:31Z biological_process owl:Class GO:0046076 biolink:NamedThing dTTP catabolic process The chemical reactions and pathways resulting in the breakdown of dTTP, deoxyribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl dTTP breakdown|dTTP degradation|dTTP catabolism biological_process owl:Class GO:0009213 biolink:NamedThing pyrimidine deoxyribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside triphosphate breakdown|pyrimidine deoxyribonucleoside triphosphate catabolism|pyrimidine deoxyribonucleoside triphosphate degradation biological_process owl:Class GO:1904345 biolink:NamedThing negative regulation of gastric mucosal blood circulation Any process that stops, prevents or reduces the frequency, rate or extent of gastric mucosal blood circulation. tmpzr1t_l9r_go_relaxed.owl down-regulation of gastric mucosal blood circulation|downregulation of gastric mucosal blood circulation|down regulation of gastric mucosal blood circulation|down regulation of stomach mucosal blood circulation|downregulation of stomach mucosal blood circulation|inhibition of stomach mucosal blood circulation|down-regulation of stomach mucosal blood circulation|negative regulation of stomach mucosal blood circulation|inhibition of gastric mucosal blood circulation sl 2015-06-11T21:20:44Z biological_process owl:Class GO:0051895 biolink:NamedThing negative regulation of focal adhesion assembly Any process that stops, prevents, or reduces the frequency, rate or extent of focal adhesion assembly, the establishment and maturation of focal adhesions. tmpzr1t_l9r_go_relaxed.owl downregulation of focal adhesion formation|inhibition of focal adhesion formation|down regulation of focal adhesion formation|down-regulation of focal adhesion formation biological_process owl:Class GO:0051893 biolink:NamedThing regulation of focal adhesion assembly Any process that modulates the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions. tmpzr1t_l9r_go_relaxed.owl regulation of adhesion plaque assembly biological_process owl:Class GO:0080148 biolink:NamedThing negative regulation of response to water deprivation Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. tmpzr1t_l9r_go_relaxed.owl dhl 2010-03-26T01:58:11Z biological_process owl:Class GO:0043161 biolink:NamedThing proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl proteasomal ubiquitin-dependent protein catabolism|proteasomal pathway|proteasomal ubiquitin-dependent protein degradation|proteasomal ubiquitin-dependent protein breakdown|proteasomal processing|proteasomal ubiquitin-dependent protein catabolic process|proteasome pathway biological_process owl:Class GO:0018625 biolink:NamedThing naphthalene 1,2-dioxygenase activity Catalysis of the reaction: naphthalene + NADH + H+ + O2 = (1R,2S)-1,2-dihydronaphthalene-1,2-diol + NAD+. tmpzr1t_l9r_go_relaxed.owl naphthalene oxygenase activity|naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)|naphthalene dioxygenase activity MetaCyc:NAPHTHALENE-12-DIOXYGENASE-RXN|RHEA:19173|EC:1.14.12.12|UM-BBD_enzymeID:e0002 molecular_function owl:Class GO:0045119 biolink:NamedThing azole:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + azole(in) = H+(in) + azole(out). Azoles are heterocyclic compounds found in many biologically important substances. tmpzr1t_l9r_go_relaxed.owl azole:hydrogen antiporter activity|bicyclomycin/sulfathiazole:hydrogen antiporter activity molecular_function owl:Class GO:0046099 biolink:NamedThing guanine biosynthetic process The chemical reactions and pathways resulting in the formation of guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important. tmpzr1t_l9r_go_relaxed.owl guanine biosynthesis|guanine formation|guanine anabolism|guanine synthesis biological_process owl:Class GO:0009113 biolink:NamedThing purine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. tmpzr1t_l9r_go_relaxed.owl purine base anabolism|purine base formation|purine base biosynthesis|purine base synthesis|purine base biosynthetic process MetaCyc:PWY-841 biological_process owl:Class GO:0072336 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin involved in neural crest cell differentiation. The Wnt signaling pathway is the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signaling pathway through beta-catenin involved in neural crest cell differentiation|negative regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|negative regulation of canonical Wnt receptor signalling pathway involved in neural crest cell differentiation|negative regulation of canonical Wnt-activated signaling pathway involved in neural crest cell differentiation mah 2010-11-03T03:16:10Z biological_process owl:Class GO:0090090 biolink:NamedThing negative regulation of canonical Wnt signaling pathway Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl negative regulation of canonical Wnt receptor signalling pathway|negative regulation of canonical Wnt-activated signaling pathway|negative regulation of catenin protein nuclear translocation|negative regulation of catenin import into nucleus|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway through beta-catenin tb 2009-10-30T11:27:17Z GO:0035414 biological_process owl:Class GO:0008074 biolink:NamedThing guanylate cyclase complex, soluble Complex that possesses guanylate cyclase activity and is not bound to a membrane. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'guanylate cyclase activity ; GO:0004383'. cellular_component owl:Class GO:0018677 biolink:NamedThing pentachlorophenol monooxygenase activity Catalysis of the reaction: pentachlorophenol + NADPH + H+ + O2 = tetrachlorohydroquinone + NADP+ + chloride. tmpzr1t_l9r_go_relaxed.owl pentachlorophenol dechlorinase activity|pentachlorophenol hydroxylase activity|PcpB|PCB4MO activity|PCB 4-monooxygenase activity|PCP hydroxylase activity|pentachlorophenol 4-monooxygenase activity|pentachlorophenol dehalogenase activity|pentachlorophenol,NADPH:oxygen oxidoreductase (hydroxylating, dechlorinating) EC:1.14.13.50|UM-BBD_enzymeID:e0148|RHEA:18685|MetaCyc:PCP4MONO-RXN molecular_function owl:Class GO:0035323 biolink:NamedThing male germline ring canal An intercellular bridge that connects the germline cells of a male cyst. tmpzr1t_l9r_go_relaxed.owl testicular ring canal|spermatocyte ring canal bf 2010-02-25T11:05:14Z cellular_component owl:Class GO:0045172 biolink:NamedThing germline ring canal Germline specific intercellular bridge. During cyst formation in insects, ring canals interconnect the cells of the cyst, facilitating the passage of cytoplasmic components between cells. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015445 biolink:NamedThing P-type silver transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ag+(in) -> ADP + phosphate + Ag+(out). tmpzr1t_l9r_go_relaxed.owl silver exporting ATPase activity|ATP phosphohydrolase (Ag+-exporting)|Ag+-exporting ATPase activity|silver-exporting ATPase activity|silver transmembrane transporter activity, phosphorylative mechanism MetaCyc:3.6.3.53-RXN|RHEA:14733|EC:7.2.2.15 molecular_function owl:Class GO:0015080 biolink:NamedThing silver ion transmembrane transporter activity Enables the transfer of silver (Ag) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl silver transporter activity molecular_function owl:Class GO:0004822 biolink:NamedThing isoleucine-tRNA ligase activity Catalysis of the reaction: L-isoleucine + ATP + tRNA(Ile) = L-isoleucyl-tRNA(Ile) + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl isoleucine translase activity|isoleucyl-tRNA synthetase activity|isoleucyl-transfer ribonucleate synthetase activity|isoleucine-transfer RNA ligase activity|isoleucyl-transfer RNA synthetase activity|L-isoleucine:tRNAIle ligase (AMP-forming)|isoleucine-tRNA synthetase activity Reactome:R-HSA-379893|EC:6.1.1.5|KEGG_REACTION:R03656|Reactome:R-HSA-380176|RHEA:11060|MetaCyc:ISOLEUCINE--TRNA-LIGASE-RXN molecular_function owl:Class GO:0009322 biolink:NamedThing trimethylamine-N-oxide reductase complex An enzyme complex that catalyzes the reduction of trimethylamine N-oxide to trimethylamine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072720 biolink:NamedThing response to dithiothreitol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dithiothreitol stimulus. tmpzr1t_l9r_go_relaxed.owl response to DTT|response to 1,4-dithiothreitol mah 2012-05-09T11:08:58Z biological_process owl:Class GO:1901548 biolink:NamedThing positive regulation of synaptic vesicle lumen acidification Any process that activates or increases the frequency, rate or extent of synaptic vesicle lumen acidification. tmpzr1t_l9r_go_relaxed.owl upregulation of synaptic vesicle lumen pH reduction|up-regulation of synaptic vesicle lumen acidification|up-regulation of synaptic vesicle lumen pH reduction|positive regulation of proton loading|activation of synaptic vesicle lumen acidification|upregulation of synaptic vesicle lumen acidification|positive regulation of synaptic vesicle lumen pH reduction|activation of synaptic vesicle lumen pH reduction|up regulation of synaptic vesicle lumen pH reduction|up regulation of synaptic vesicle lumen acidification dsf 2012-10-26T16:09:32Z biological_process owl:Class GO:0002336 biolink:NamedThing B-1 B cell lineage commitment The process in which an immature B cell becomes committed to become a B-1 B cell. tmpzr1t_l9r_go_relaxed.owl B-1 B-lymphocyte lineage commitment|B-1 B-cell lineage commitment|B-1 B lymphocyte lineage commitment biological_process owl:Class GO:0002326 biolink:NamedThing B cell lineage commitment The process in which a lymphoid progenitor cell becomes committed to become any type of B cell. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte lineage commitment|B-cell lineage commitment|B lymphocyte lineage commitment biological_process owl:Class GO:1900126 biolink:NamedThing negative regulation of hyaluronan biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of hyaluronan biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of hyaluronan anabolism|down regulation of hyaluronan formation|downregulation of hyaluronan biosynthesis|downregulation of hyaluronan synthesis|down-regulation of hyaluronan biosynthetic process|negative regulation of hyaluronan formation|down-regulation of hyaluronan synthesis|down regulation of hyaluronan biosynthesis|inhibition of hyaluronan formation|negative regulation of hyaluronan synthesis|inhibition of hyaluronan biosynthesis|inhibition of hyaluronan synthesis|down-regulation of hyaluronan biosynthesis|downregulation of hyaluronan biosynthetic process|down regulation of hyaluronan anabolism|down-regulation of hyaluronan formation|negative regulation of hyaluronan anabolism|down regulation of hyaluronan biosynthetic process|inhibition of hyaluronan biosynthetic process|down regulation of hyaluronan synthesis|down-regulation of hyaluronan anabolism|inhibition of hyaluronan anabolism|negative regulation of hyaluronan biosynthesis|downregulation of hyaluronan formation yaf 2012-02-23T01:09:29Z biological_process owl:Class GO:0010558 biolink:NamedThing negative regulation of macromolecule biosynthetic process Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903672 biolink:NamedThing positive regulation of sprouting angiogenesis Any process that activates or increases the frequency, rate or extent of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl activation of sprouting angiogenesis|upregulation of sprouting angiogenesis|up regulation of sprouting angiogenesis|up-regulation of sprouting angiogenesis pga 2014-11-27T10:11:08Z biological_process owl:Class GO:2000184 biolink:NamedThing positive regulation of progesterone biosynthetic process Any process that activates or increases the frequency, rate or extent of progesterone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of progesterone synthesis|positive regulation of progesterone anabolism|positive regulation of progesterone formation|positive regulation of progesterone biosynthesis dph 2010-10-14T07:36:14Z biological_process owl:Class GO:0034063 biolink:NamedThing stress granule assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule. tmpzr1t_l9r_go_relaxed.owl SG assembly biological_process owl:Class GO:0035359 biolink:NamedThing negative regulation of peroxisome proliferator activated receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the peroxisome proliferator activated receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of peroxisome proliferator-activated receptor signaling pathway|negative regulation of PPAR signaling pathway|negative regulation of peroxisome proliferator activated receptor signalling pathway bf 2010-03-05T10:41:35Z biological_process owl:Class GO:0060663 biolink:NamedThing apoptotic process involved in salivary gland cavitation Any apoptotic process in which the solid core of the gland is hollowed out to form the duct. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in salivary gland cavitation dph 2009-06-01T08:27:16Z biological_process owl:Class GO:0060609 biolink:NamedThing apoptotic process involved in tube lumen cavitation Any apoptotic process that contributes to the hollowing out of an epithelial rod or cord to form the central hole in a tube. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in tube lumen cavitation dph 2009-05-15T10:05:39Z biological_process owl:Class GO:1902926 biolink:NamedThing inulin metabolic process The chemical reactions and pathways involving inulin. tmpzr1t_l9r_go_relaxed.owl inulin metabolism SUC2 in S. cerevisiae strain JZ1C in PMID:23104410. se 2014-04-21T23:54:33Z biological_process owl:Class GO:1905144 biolink:NamedThing response to acetylcholine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetylcholine stimulus. tmpzr1t_l9r_go_relaxed.owl dos 2016-04-14T08:54:49Z biological_process owl:Class GO:0099618 biolink:NamedThing UDP-glucuronic acid dehydrogenase activity Catalysis of the reaction: UDP-glucuronate + NAD+ = UDP-beta-L-threo-pentapyranos-4-ulose + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UDP-GlcUA decarboxylase activity EC:1.1.1.305|RHEA:24702 molecular_function owl:Class GO:0070281 biolink:NamedThing pyridoxamine binding Binding to pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, a form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061704 biolink:NamedThing glycolytic process from sucrose The chemical reactions and pathways resulting in the breakdown of a sucrose into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. tmpzr1t_l9r_go_relaxed.owl dph 2015-06-11T13:26:28Z biological_process owl:Class GO:0005614 biolink:NamedThing interstitial matrix A type of extracellular matrix found in interstitial connective tissue, characterized by the presence of fibronectins, proteoglycans, and types I, III, V, VI, VII and XII collagens. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030979 biolink:NamedThing alpha-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of alpha-glucans, compounds composed of glucose residues linked by alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl alpha-glucan anabolism|alpha-glucan biosynthesis|alpha-glucan synthesis|alpha-glucan formation biological_process owl:Class GO:0030662 biolink:NamedThing coated vesicle membrane The lipid bilayer surrounding a coated vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042388 biolink:NamedThing gibberellic acid mediated signaling pathway, G-alpha-dependent A series of molecular signals mediated by the detection of gibberellic acid and dependent on the coupling of the alpha subunit of G proteins to the hormone receptors. tmpzr1t_l9r_go_relaxed.owl gibberellic acid mediated signalling, G-alpha-dependent biological_process owl:Class GO:0050244 biolink:NamedThing pyruvate oxidase (CoA-acetylating) activity Catalysis of the reaction: CoA + H(+) + O(2) + pyruvate = acetyl-CoA + CO(2) + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl pyruvate:oxygen 2-oxidoreductase (CoA-acetylating) MetaCyc:PYRUVATE-OXIDASE-COA-ACETYLATING-RXN|EC:1.2.3.6|KEGG_REACTION:R00211|RHEA:21912 molecular_function owl:Class GO:0010168 biolink:NamedThing ER body A novel compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum body cellular_component owl:Class GO:0034156 biolink:NamedThing negative regulation of toll-like receptor 7 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 7 signalling pathway|negative regulation of TLR7 signaling pathway biological_process owl:Class GO:0034155 biolink:NamedThing regulation of toll-like receptor 7 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR7 signaling pathway|regulation of toll-like receptor 7 signalling pathway biological_process owl:Class GO:1903450 biolink:NamedThing regulation of G1 to G0 transition Any process that modulates the frequency, rate or extent of G1 to G0 transition. tmpzr1t_l9r_go_relaxed.owl regulation of cell cycle quiescence|regulation of stationary phase|regulation of G1/G0 transition|regulation of establishment of cell quiescence di 2014-09-19T22:23:13Z biological_process owl:Class GO:0106111 biolink:NamedThing regulation of mitotic cohesin ssDNA (lagging strand) loading Any process that modulates the frequency, rate or extent of mitotic cohesin ssDNA (lagging strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:36:47Z biological_process owl:Class GO:0018178 biolink:NamedThing peptidyl-threonine adenylylation The adenylylation of peptidyl-threonine to form peptidyl-O-(phospho-5'-adenosine)-L-threonine. tmpzr1t_l9r_go_relaxed.owl peptidyl-threonine adenylation RESID:AA0267 biological_process owl:Class GO:0018117 biolink:NamedThing protein adenylylation The addition of an adenylyl group (adenosine 5'-monophosphate; AMP) to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein AMPylation|protein adenylation|protein amino acid adenylylation GO:0018176 biological_process owl:Class GO:0019468 biolink:NamedThing nopaline catabolic process The chemical reactions and pathways resulting in the breakdown of nopaline (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative. tmpzr1t_l9r_go_relaxed.owl nopaline breakdown|nopaline degradation|nopaline catabolism MetaCyc:NOPALINEDEG-PWY biological_process owl:Class GO:2001114 biolink:NamedThing positive regulation of cellular response to hepatocyte growth factor stimulus Any process that activates or increases the frequency, rate or extent of cellular response to hepatocyte growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular response to HGF stimulus dph 2011-10-05T05:43:26Z biological_process owl:Class GO:0004490 biolink:NamedThing methylglutaconyl-CoA hydratase activity Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = trans-3-methylglutaconyl-CoA + H(2)O. tmpzr1t_l9r_go_relaxed.owl methylglutaconase activity|(S)-3-hydroxy-3-methylglutaryl-CoA hydro-lyase activity|(S)-3-hydroxy-3-methylglutaryl-CoA hydro-lyase (trans-3-methylglutaconyl-CoA-forming)|methylglutaconyl coenzyme A hydratase activity|3-methylglutaconyl CoA hydratase activity KEGG_REACTION:R02085|EC:4.2.1.18|MetaCyc:METHYLGLUTACONYL-COA-HYDRATASE-RXN|RHEA:21536|Reactome:R-HSA-70785 molecular_function owl:Class GO:1902181 biolink:NamedThing verruculogen biosynthetic process The chemical reactions and pathways resulting in the formation of verruculogen. tmpzr1t_l9r_go_relaxed.owl verruculogen synthesis|verruculogen anabolism|verruculogen formation|verruculogen biosynthesis di 2013-05-30T17:44:35Z biological_process owl:Class GO:0008964 biolink:NamedThing phosphoenolpyruvate carboxylase activity Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + HCO3-. tmpzr1t_l9r_go_relaxed.owl PEPCase activity|phosphopyruvate (phosphate) carboxylase activity|phosphate:oxaloacetate carboxy-lyase (adding phosphate; phosphoenolpyruvate-forming)|PEPC|phosphoenolpyruvic carboxylase activity|phosphate:oxaloacetate carboxy-lyase (phosphorylating)|PEP carboxylase activity KEGG_REACTION:R00345|MetaCyc:PEPCARBOX-RXN|EC:4.1.1.31|RHEA:28370 molecular_function owl:Class GO:0004611 biolink:NamedThing phosphoenolpyruvate carboxykinase activity Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products. tmpzr1t_l9r_go_relaxed.owl PEP carboxykinase activity|phosphopyruvate carboxylase activity|PEPCK activity EC:4.1.1.32 molecular_function owl:Class GO:0034268 biolink:NamedThing discadenine biosynthetic process The chemical reactions and pathways resulting in the formation of discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid. tmpzr1t_l9r_go_relaxed.owl discadenine formation|discadenine anabolism|discadenine biosynthesis|discadenine synthesis biological_process owl:Class GO:1901241 biolink:NamedThing 4-hydroxyphenylacetate transmembrane transporter activity Enables the transfer of 4-hydroxyphenylacetate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:33175 jl 2012-08-07T15:09:49Z molecular_function owl:Class GO:0002769 biolink:NamedThing natural killer cell inhibitory signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of a natural killer cell capable of inhibiting an immune effector process contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl natural killer cell inhibitory signalling pathway|Ly49 inhibitory receptor signaling pathway|inhibitory KIR signaling pathway|NK cell inhibitory signaling pathway|killer cell inhibitory receptor signaling pathway biological_process owl:Class GO:0015322 biolink:NamedThing secondary active oligopeptide transmembrane transporter activity Enables the transfer of an oligopeptide or oligopeptides from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl oligopeptide porter activity molecular_function owl:Class GO:1900500 biolink:NamedThing regulation of butyryl-CoA catabolic process to butyrate Any process that modulates the frequency, rate or extent of butyryl-CoA catabolic process to butyrate. tmpzr1t_l9r_go_relaxed.owl regulation of butyryl-CoA catabolism to butyrate tt 2012-05-02T03:56:19Z biological_process owl:Class GO:0030650 biolink:NamedThing peptide antibiotic metabolic process The chemical reactions and pathways involving peptides with antibiotic activity. tmpzr1t_l9r_go_relaxed.owl peptide antibiotic metabolism biological_process owl:Class GO:0006518 biolink:NamedThing peptide metabolic process The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. tmpzr1t_l9r_go_relaxed.owl peptide metabolism biological_process owl:Class GO:0018124 biolink:NamedThing peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone The cross-linking of the epsilon-amino group of a peptidyl-lysine with peptidyl-topaquinone, a modified tyrosine residue. tmpzr1t_l9r_go_relaxed.owl RESID:AA0233 biological_process owl:Class GO:0009210 biolink:NamedThing pyrimidine ribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside triphosphate catabolism|pyrimidine ribonucleoside triphosphate breakdown|pyrimidine ribonucleoside triphosphate degradation biological_process owl:Class GO:0009203 biolink:NamedThing ribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside triphosphate breakdown|ribonucleoside triphosphate catabolism|ribonucleoside triphosphate degradation biological_process owl:Class GO:0046344 biolink:NamedThing ecdysteroid catabolic process The chemical reactions and pathways resulting in the breakdown of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development. tmpzr1t_l9r_go_relaxed.owl ecdysteroid breakdown|ecdysteroid degradation|ecdysteroid catabolism biological_process owl:Class GO:0032265 biolink:NamedThing XMP salvage Any process which produces xanthosine monophosphate from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106380 biolink:NamedThing purine ribonucleotide salvage Any process which produces a purine ribonucleotide from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl hjd 2021-06-11T14:06:34Z biological_process owl:Class GO:1900463 biolink:NamedThing negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter Any process that stops, prevents, or reduces the frequency, rate or extent of cellular response to alkalinity by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular response to basic pH by negative regulation of transcription from RNA polymerase II promoter|negative regulation of cellular response to alkalinity by negative regulation of transcription from RNA polymerase II promoter dgf 2012-05-01T07:22:50Z biological_process owl:Class GO:0000122 biolink:NamedThing negative regulation of transcription by RNA polymerase II Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of transcription from Pol II promoter|down regulation of global transcription from RNA polymerase II promoter|down regulation of transcription from RNA polymerase II promoter|downregulation of global transcription from RNA polymerase II promoter|downregulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter, global|down-regulation of global transcription from RNA polymerase II promoter|inhibition of transcription from RNA polymerase II promoter|down-regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|inhibition of global transcription from RNA polymerase II promoter|negative regulation of global transcription from Pol II promoter GO:0045816|GO:0010553 biological_process owl:Class GO:1905639 biolink:NamedThing positive regulation of mitochondrial mRNA catabolic process Any process that activates or increases the frequency, rate or extent of mitochondrial mRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of mitochondrial mRNA catabolic process|activation of mitochondrial mRNA catabolic process|up regulation of mitochondrial mRNA catabolic process|up-regulation of mitochondrial mRNA catabolic process tb 2016-11-03T20:24:13Z biological_process owl:Class GO:0070445 biolink:NamedThing regulation of oligodendrocyte progenitor proliferation Any process that modulates the frequency, rate or extent of oligodendrocyte progenitor proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of oligodendrocyte precursor proliferation biological_process owl:Class GO:0042851 biolink:NamedThing L-alanine metabolic process The chemical reactions and pathways involving L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-alanine metabolism biological_process owl:Class GO:0006522 biolink:NamedThing alanine metabolic process The chemical reactions and pathways involving alanine, 2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl alanine metabolism biological_process owl:Class GO:0048399 biolink:NamedThing regulation of intermediate mesodermal cell fate specification Any process that modulates the frequency, rate or extent of intermediate mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042661 biolink:NamedThing regulation of mesodermal cell fate specification Any process that modulates the frequency, rate or extent of mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903376 biolink:NamedThing regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of neuron apoptosis in response to oxidative stress|regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|regulation of oxidative stress-induced neuronal apoptosis|regulation of oxidative stress-induced neuron apoptosis bf 2014-08-26T13:03:13Z biological_process owl:Class GO:0050316 biolink:NamedThing T2-induced deoxynucleotide kinase activity Catalysis of the reactions: ATP + dGMP = ADP + dGDP, and ATP + dTMP = ADP + dTDP. tmpzr1t_l9r_go_relaxed.owl ATP:(d)NMP phosphotransferase activity EC:2.7.4.12|MetaCyc:GMKALT-RXN|RHEA:12697 molecular_function owl:Class GO:0038136 biolink:NamedThing ERBB3-ERBB4 signaling pathway A series of molecular signals transmitted by a heterodimeric complex of the tyrosine kinase receptors ERBB3 and ERBB4. The pathway begins with binding of a ligand to either cell surface receptor, or the dimeric receptor complex, and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl HER3-HER4 signaling pathway|ERBB3-ERBB4 signalling pathway bf 2012-03-30T11:21:19Z biological_process owl:Class GO:0038130 biolink:NamedThing ERBB4 signaling pathway A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor ERBB4 on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ERBB4 signalling pathway|HER4 signaling pathway|receptor tyrosine-protein kinase erbB-4 signaling pathway bf 2012-03-30T10:44:08Z biological_process owl:Class GO:0007552 biolink:NamedThing metamorphosis A biological process in which an animal physically develops after birth or hatching, involving a conspicuous and relatively abrupt change in the animal's form or structure. Examples include the change from tadpole to frog, and the change from larva to adult. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Metamorphosis GO:0046699|GO:0046698 biological_process owl:Class GO:1904292 biolink:NamedThing regulation of ERAD pathway Any process that modulates the frequency, rate or extent of ERAD pathway. tmpzr1t_l9r_go_relaxed.owl regulation of ER-associated degradation pathway|regulation of endoplasmic reticulum-associated protein degradation pathway|regulation of endoplasmic reticulum-associated degradation bf 2015-06-09T14:44:27Z biological_process owl:Class GO:1902017 biolink:NamedThing regulation of cilium assembly Any process that modulates the frequency, rate or extent of cilium assembly. tmpzr1t_l9r_go_relaxed.owl regulation of cilium biogenesis|regulation of ciliogenesis dph 2013-03-26T18:10:51Z biological_process owl:Class GO:0140435 biolink:NamedThing negative regulation of protein localization to meiotic spindle pole body Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to a meiotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl pg 2020-02-24T13:27:15Z biological_process owl:Class GO:0140433 biolink:NamedThing regulation of protein localization to meiotic spindle pole body Any process that modulates the frequency, rate or extent of protein localization to a meiotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl pg 2020-02-24T13:26:53Z biological_process owl:Class GO:0043354 biolink:NamedThing enucleate erythrocyte maturation A developmental process, independent of morphogenetic (shape) change, that is required for an enucleate erythrocyte to attain its fully functional state. An enucleate erythrocyte is an erythrocyte without a nucleus. tmpzr1t_l9r_go_relaxed.owl enucleate RBC maturation|enucleate red blood cell maturation biological_process owl:Class GO:0042635 biolink:NamedThing positive regulation of hair cycle Any process that activates or increases the frequency, rate or extent of the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair. tmpzr1t_l9r_go_relaxed.owl activation of hair cycle|up-regulation of hair cycle|stimulation of hair cycle|upregulation of hair cycle|up regulation of hair cycle biological_process owl:Class GO:0110159 biolink:NamedThing regulation of mitotic spindle formation (spindle phase one) Any process that modulates the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase one). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:10:26Z biological_process owl:Class GO:1901193 biolink:NamedThing regulation of formation of translation preinitiation complex Any process that modulates the frequency, rate or extent of formation of translation preinitiation complex. tmpzr1t_l9r_go_relaxed.owl regulation of formation of translation pre-initiation complex|regulation of translation preinitiation complex assembly ss 2012-07-25T02:31:20Z biological_process owl:Class GO:1904688 biolink:NamedThing regulation of cytoplasmic translational initiation Any process that modulates the frequency, rate or extent of cytoplasmic translational initiation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21560 dos 2015-09-25T14:39:38Z biological_process owl:Class GO:0034966 biolink:NamedThing intronic box H/ACA snoRNA processing Any process involved in the conversion of a primary box H/ACA type small nucleolar RNA (snoRNA) transcript that resides within, and is processed from, the intron of a pre-mRNA into a mature box H/ACA snoRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031070 biolink:NamedThing intronic snoRNA processing The biogenesis of a snoRNA molecule which resides within, and is processed from, the intron of a pre-mRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051556 biolink:NamedThing leucoanthocyanidin metabolic process The chemical reactions and pathways involving leucoanthocyanidins, a class of colorless intermediates in the biosynthetic pathway of the pigmented flavonoids. tmpzr1t_l9r_go_relaxed.owl leucoanthocyanidin metabolism MetaCyc:PWY1F-823 biological_process owl:Class GO:1901152 biolink:NamedThing vistamycin biosynthetic process The chemical reactions and pathways resulting in the formation of vistamycin. tmpzr1t_l9r_go_relaxed.owl ribostamycin biosynthesis|ribostamycin synthesis|ribostamycin biosynthetic process|ribostamycin anabolism|vistamycin synthesis|vistamycin anabolism|vistamycin biosynthesis|ribostamycin formation|vistamycin formation yaf 2012-07-17T04:27:15Z biological_process owl:Class GO:0016170 biolink:NamedThing interleukin-15 receptor binding Binding to an interleukin-15 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-15 receptor ligand|IL-15 molecular_function owl:Class GO:0047887 biolink:NamedThing farnesyl diphosphate kinase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + ATP = 2-trans,6-trans-farnesyl triphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl ATP:farnesyl-diphosphate phosphotransferase activity|farnesyl pyrophosphate kinase activity|farnesyl-diphosphate kinase activity KEGG_REACTION:R02303|RHEA:21544|EC:2.7.4.18|MetaCyc:FARNESYL-DIPHOSPHATE-KINASE-RXN molecular_function owl:Class GO:1902640 biolink:NamedThing propan-2-ol biosynthetic process The chemical reactions and pathways resulting in the formation of propan-2-ol. tmpzr1t_l9r_go_relaxed.owl Isopropyl alcohol biosynthetic process|propan-2-ol formation|propan-2-ol biosynthesis|Isopropanol biosynthetic process|propan-2-ol synthesis|propan-2-ol anabolism tt 2014-01-21T13:57:22Z biological_process owl:Class GO:0048918 biolink:NamedThing posterior lateral line nerve development The process whose specific outcome is the progression of the posterior lateral line nerve over time, from its formation to the mature structure. The posterior lateral line nerve innervates hair cells of the PLL and projects to an octavolateralis column in the hindbrain that consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus. tmpzr1t_l9r_go_relaxed.owl PLLN development|caudal lateral line nerve development GO:0021733 biological_process owl:Class GO:0048892 biolink:NamedThing lateral line nerve development The process whose specific outcome is the progression of the lateral line nerve over time, form its formation to the mature structure. Lateral line nerves project primarily to an octavolateralis column in the hindbrain that consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus. tmpzr1t_l9r_go_relaxed.owl nLL development biological_process owl:Class GO:0005581 biolink:NamedThing collagen trimer A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Collagen cellular_component owl:Class GO:0032202 biolink:NamedThing telomere assembly A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a telomere at a non-telomeric double-stranded DNA end. A telomere is a terminal region of a linear chromosome that includes telomeric DNA repeats and associated proteins. tmpzr1t_l9r_go_relaxed.owl telomere formation biological_process owl:Class GO:0060643 biolink:NamedThing epithelial cell differentiation involved in mammary gland bud morphogenesis The process in which a cell of the mammary placode becomes a cell of the mammary gland bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T07:58:13Z biological_process owl:Class GO:0045606 biolink:NamedThing positive regulation of epidermal cell differentiation Any process that activates or increases the frequency, rate or extent of epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of epidermal cell differentiation|positive regulation of hypodermal cell differentiation|stimulation of epidermal cell differentiation|upregulation of epidermal cell differentiation|up-regulation of epidermal cell differentiation|up regulation of epidermal cell differentiation biological_process owl:Class GO:0043728 biolink:NamedThing 2-keto-4-methylthiobutyrate aminotransferase activity Catalysis of the reaction: 2-keto-4-methylthiobutyrate + L-glutamine = 2-oxoglutaramate + L-methionine. tmpzr1t_l9r_go_relaxed.owl EC:4.1.1.- molecular_function owl:Class GO:0070226 biolink:NamedThing sulfur:ferric ion oxidoreductase activity Catalysis of the reaction: a perthiol + 4 Fe3+ + 3 H2O = sulfite + a thiol + 4 Fe2+ + 8 H+. tmpzr1t_l9r_go_relaxed.owl hydrogen sulfide:ferric ion oxidoreductase MetaCyc:SULFFEOXIDO-RXN molecular_function owl:Class GO:1901324 biolink:NamedThing response to trichodermin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichodermin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-30T10:11:07Z biological_process owl:Class GO:1904470 biolink:NamedThing regulation of endothelin production Any process that modulates the frequency, rate or extent of endothelin production. tmpzr1t_l9r_go_relaxed.owl regulation of endothelin-3 secretion|regulation of endothelin-2 secretion|regulation of EDN2 secretion|regulation of EDN3 secretion|regulation of endothelin secretion|regulation of endothelin-1 secretion|regulation of EDN1 secretion sl 2015-07-09T19:57:57Z biological_process owl:Class GO:0045738 biolink:NamedThing negative regulation of DNA repair Any process that stops, prevents, or reduces the frequency, rate or extent of DNA repair. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA repair|inhibition of DNA repair|downregulation of DNA repair|down-regulation of DNA repair biological_process owl:Class GO:0044218 biolink:NamedThing other organism cell membrane The cell membrane of a secondary organism with which the first organism is interacting. tmpzr1t_l9r_go_relaxed.owl foreign membrane|other organism membrane jl 2009-11-12T02:37:44Z GO:0044279 cellular_component owl:Class GO:0033800 biolink:NamedThing isoflavone 7-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a 7-hydroxyisoflavone = S-adenosyl-L-homocysteine + a 7-methoxyisoflavone. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:hydroxyisoflavone 7-O-methyltransferase activity EC:2.1.1.150|MetaCyc:RXN-6241|RHEA:17933 molecular_function owl:Class GO:0051077 biolink:NamedThing secondary cell septum Cell wall structures composed of linear polysaccharides which are deposited at both sides of the primary septum at 90 degrees to the primary septum. tmpzr1t_l9r_go_relaxed.owl secondary septum cellular_component owl:Class GO:0000935 biolink:NamedThing division septum A cell septum which forms as part of the division site and functions in the compartmentalization of a cell into two daughter cells at division. A division septum spans a cell and does not allow exchange of organelles or cytoplasm between compartments. tmpzr1t_l9r_go_relaxed.owl divison septum|cell septum surface|septum surface|complete septum https://github.com/geneontology/go-ontology/issues/19434 GO:0043187 cellular_component owl:Class GO:1904739 biolink:NamedThing regulation of synapse organization by posttranscriptional regulation of gene expression A posttranscriptional regulation of gene expression that results in regulation of synapse organization. tmpzr1t_l9r_go_relaxed.owl regulation of synapse development by posttranscriptional regulation of gene expression|regulation of synapse organisation by posttranscriptional regulation of gene expression|regulation of synapse morphogenesis by posttranscriptional regulation of gene expression|regulation of synapse organization and biogenesis by posttranscriptional regulation of gene expression tb 2015-10-15T21:25:46Z biological_process owl:Class GO:0034764 biolink:NamedThing positive regulation of transmembrane transport Any process that activates or increases the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl activation of transmembrane transport|upregulation of transmembrane transport|positive regulation of membrane transport|stimulation of transmembrane transport|up-regulation of transmembrane transport|up regulation of transmembrane transport biological_process owl:Class GO:0001216 biolink:NamedThing DNA-binding transcription activator activity A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets. tmpzr1t_l9r_go_relaxed.owl bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding|sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription|transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding|metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription|transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding|bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding https://github.com/geneontology/go-ontology/issues/16534|https://github.com/geneontology/go-ontology/issues/16736 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. krc 2011-01-26T03:09:27Z GO:0001140|GO:0001215 molecular_function owl:Class GO:0044187 biolink:NamedThing host cell lysosome A small lytic vacuole that has cell cycle-independent morphology and is found in most host animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and host cell lysosomes have a great variety of morphologies and functions. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T03:26:00Z cellular_component owl:Class GO:0033655 biolink:NamedThing host cell cytoplasm part Any constituent part of the host cell cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cytoplasm component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:0097595 biolink:NamedThing ventral disc crossbridge Structure horizontally linking adjacent microribbons of the ventral disc in Giardia species (trophozoite stage). The composition of crossbridges is not fully known yet. tmpzr1t_l9r_go_relaxed.owl crossbridge|ventral disk crossbridge Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:23:33Z cellular_component owl:Class GO:1905448 biolink:NamedThing positive regulation of mitochondrial ATP synthesis coupled electron transport Any process that activates or increases the frequency, rate or extent of mitochondrial ATP synthesis coupled electron transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of mitochondrial ATP synthesis coupled electron transport|up regulation of mitochondrial ATP synthesis coupled electron transport|upregulation of mitochondrial ATP synthesis coupled electron transport|activation of mitochondrial ATP synthesis coupled electron transport dph 2016-09-15T18:58:14Z biological_process owl:Class GO:1904707 biolink:NamedThing positive regulation of vascular associated smooth muscle cell proliferation Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of VSMC proliferation|up regulation of vascular smooth muscle cell proliferation|up-regulation of vascular smooth muscle cell proliferation|positive regulation of VSMC proliferation|activation of vascular smooth muscle cell proliferation|positive regulation of vascular smooth muscle cell proliferation|activation of VSMC proliferation|upregulation of VSMC proliferation|upregulation of vascular smooth muscle cell proliferation|up regulation of VSMC proliferation sl 2015-10-01T16:05:32Z biological_process owl:Class GO:1990430 biolink:NamedThing extracellular matrix protein binding Binding to a protein that is part of an extracellular matrix. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-29T14:57:07Z molecular_function owl:Class GO:0043914 biolink:NamedThing NADPH:sulfur oxidoreductase activity Catalysis of the reaction: NADPH + H+ + sulfur = hydrogen sulfide + NADP+. tmpzr1t_l9r_go_relaxed.owl NADPH:sulphur oxidoreductase activity|NAD(P)H elemental sulfur oxidoreductase activity|NAD(P)H sulfur oxidoreductase activity|NAD(P)H sulphur oxidoreductase activity|NSR|coenzyme A-dependent NAD(P)H sulfur oxidoreductase activity|NAD(P)H:sulfur oxidoreductase activity|CoA-dependent NAD(P)H sulfur oxidoreductase activity EC:1.8.1.18 molecular_function owl:Class GO:0140398 biolink:NamedThing versicolorin B desaturase activity Catalyzes the reaction: versicolorin B + NADPH + O(2) <=> versicolorin A + NADP(+) + 2 H(2)O. Uses heme-thiolate as a co-factor. Involved in the synthesis of aflatoxins in the fungus Aspergillus parasiticus. tmpzr1t_l9r_go_relaxed.owl RHEA:35743|MetaCyc:RXN-9495|KEGG_REACTION:R10479 pg 2019-11-29T10:30:25Z molecular_function owl:Class GO:2000014 biolink:NamedThing regulation of endosperm development Any process that modulates the frequency, rate or extent of endosperm development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:22:21Z biological_process owl:Class GO:0140624 biolink:NamedThing EGAD pathway The protein catabolic pathway which selectively extracts ER-resident membrane proteins exported to the Golgi and endosomes for degradation by cytosolic proteasomes. It begins with phosphorylation of the ER-resident membrane protein, which triggers export of the protein from the ER to the Golgi and endosomes, followed by polyubiquitination by the Dsc E3 ubiquitin ligase complex and extraction of the ubiquitinated target, and ends with proteasomal degradation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21085 pg 2021-03-12T10:41:58Z biological_process owl:Class GO:0052903 biolink:NamedThing N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity Catalysis of the reaction: H(2)O + N(1)-acetylspermine + O(2) = 3-acetamidopropanal + H(2)O(2) + spermidine. tmpzr1t_l9r_go_relaxed.owl N(1)-acetylpolyamine oxidase activity|polyamine oxidase activity|non-specific polyamine oxidase activity KEGG_REACTION:R03899|RHEA:25800|MetaCyc:RXN-12090|MetaCyc:RXN-9940|EC:1.5.3.17|EC:1.5.3.13 molecular_function owl:Class GO:0031285 biolink:NamedThing regulation of sorocarp stalk cell differentiation Any process that modulates the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl regulation of stalk cell differentiation biological_process owl:Class GO:0032098 biolink:NamedThing regulation of appetite Any process which modulates appetite, the desire or physical craving for food. tmpzr1t_l9r_go_relaxed.owl regulation of hunger biological_process owl:Class GO:1903582 biolink:NamedThing negative regulation of basophil degranulation Any process that stops, prevents or reduces the frequency, rate or extent of basophil degranulation. tmpzr1t_l9r_go_relaxed.owl down-regulation of basophil degranulation|inhibition of basophil degranulation|down regulation of basophil degranulation|downregulation of basophil degranulation sl 2014-10-31T17:37:33Z biological_process owl:Class GO:0001692 biolink:NamedThing histamine metabolic process The chemical reactions and pathways involving histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl histamine metabolism biological_process owl:Class GO:0043316 biolink:NamedThing cytotoxic T cell degranulation The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a cytotoxic T cell. tmpzr1t_l9r_go_relaxed.owl cytotoxic T cell granule exocytosis|cytotoxic T-lymphocyte granule exocytosis|cytotoxic T-cell degranulation|cytotoxic T-lymphocyte degranulation|cytotoxic T lymphocyte degranulation|cytotoxic T lymphocyte granule exocytosis|cytotoxic T-cell granule exocytosis biological_process owl:Class GO:0002286 biolink:NamedThing T cell activation involved in immune response The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl T-cell activation during immune response|T-lymphocyte activation during immune response|T cell activation during immune response|T lymphocyte activation during immune response biological_process owl:Class GO:0045968 biolink:NamedThing negative regulation of juvenile hormone biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl negative regulation of juvenile hormone formation|down regulation of juvenile hormone biosynthetic process|inhibition of juvenile hormone biosynthetic process|down-regulation of juvenile hormone biosynthetic process|negative regulation of juvenile hormone synthesis|downregulation of juvenile hormone biosynthetic process|negative regulation of juvenile hormone anabolism|negative regulation of juvenile hormone biosynthesis biological_process owl:Class GO:1902727 biolink:NamedThing negative regulation of growth factor dependent skeletal muscle satellite cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of satellite cell proliferation; dependent on specific growth factor activity such as fibroblast growth factors and transforming growth factor beta. tmpzr1t_l9r_go_relaxed.owl mr 2014-02-24T16:10:24Z biological_process owl:Class GO:0010234 biolink:NamedThing anther wall tapetum cell fate specification The process in which a cell becomes capable of differentiating autonomously into a tapetal cell of anthers in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl tapetal cell fate specification biological_process owl:Class GO:0031397 biolink:NamedThing negative regulation of protein ubiquitination Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein. tmpzr1t_l9r_go_relaxed.owl down regulation of protein ubiquitination|downregulation of protein ubiquitination|down-regulation of protein ubiquitination|inhibition of protein ubiquitination biological_process owl:Class GO:1904753 biolink:NamedThing negative regulation of vascular associated smooth muscle cell migration Any process that stops, prevents or reduces the frequency, rate or extent of vascular associated smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl downregulation of vascular smooth muscle cell migration|down regulation of vascular associated smooth muscle cell migration|down regulation of vascular smooth muscle cell migration|downregulation of vascular associated smooth muscle cell migration|inhibition of vascular smooth muscle cell migration|inhibition of vascular associated smooth muscle cell migration|down-regulation of vascular smooth muscle cell migration|down-regulation of vascular associated smooth muscle cell migration|negative regulation of vascular smooth muscle cell migration rph 2015-10-19T15:49:58Z biological_process owl:Class GO:0090648 biolink:NamedThing response to environmental enrichment Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the provision of a combination of complex inanimate and social stimulations in the organism's housing environment. tmpzr1t_l9r_go_relaxed.owl response to the introduction of novel objects tb 2015-07-01T10:20:37Z biological_process owl:Class GO:1905312 biolink:NamedThing positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis Any process that activates or increases the frequency, rate or extent of cardiac neural crest cell migration involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis|upregulation of cardiac neural crest cell migration involved in outflow tract morphogenesis|up regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis|activation of cardiac neural crest cell migration involved in outflow tract morphogenesis rl 2016-07-11T17:34:43Z biological_process owl:Class GO:1901736 biolink:NamedThing (R)-mevalonic acid catabolic process The chemical reactions and pathways resulting in the breakdown of (R)-mevalonic acid. tmpzr1t_l9r_go_relaxed.owl (R)-mevalonic acid degradation|(R)-mevalonic acid breakdown|(R)-mevalonate degradation|(R)-mevalonic acid catabolism|(R)-mevalonate breakdown|(R)-mevalonate catabolism yaf 2013-01-11T11:25:55Z biological_process owl:Class GO:2000115 biolink:NamedThing regulation of maintenance of bipolar cell polarity regulating cell shape Any process that modulates the frequency, rate or extent of maintenance of bipolar cell polarity regulating in cell shape. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-21T06:33:26Z biological_process owl:Class GO:0051444 biolink:NamedThing negative regulation of ubiquitin-protein transferase activity Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin transferase activity. tmpzr1t_l9r_go_relaxed.owl anaphase promoting complex inhibition|SCF complex inhibitor|down regulation of ubiquitin transferase activity|anaphase-promoting complex inhibition|ubiquitin transferase inhibitor|negative regulation of ubiquitin transferase activity|down-regulation of ubiquitin transferase activity|anaphase-promoting complex inhibitor|APC inhibitor|downregulation of ubiquitin transferase activity|anaphase promoting complex inhibitor|inhibition of ubiquitin transferase activity|APC inhibition biological_process owl:Class GO:1901424 biolink:NamedThing response to toluene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toluene stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T18:38:32Z biological_process owl:Class GO:0021684 biolink:NamedThing cerebellar granular layer formation The process that gives rise to the cerebellar granule layer. This process pertains to the initial formation of a structure from unspecified parts. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120002 biolink:NamedThing fusiform vesicle A cytoplasmic vesicle which contains two urothelial plaques and can deliver these plaques to the apical plasma membrane of urothelial superficial (umbrella) cells. It can also be formed by endocytosis of apical plasma membrane during contractions of the urinary bladder. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12996 krc 2017-02-23T21:12:27Z cellular_component owl:Class GO:0071001 biolink:NamedThing U4/U6 snRNP A ribonucleoprotein complex that contains the extensively base paired small nuclear RNAs U4 and U6, a heptameric ring of Sm proteins associated with U4, the Lsm2-8 heptameric ring complex associated with U6, as well as several proteins that are unique to the U4 snRNP or U6 snRNPs, some of which remain associated with the U4/U6 snRNA both while the U4 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0043805 biolink:NamedThing indolepyruvate ferredoxin oxidoreductase activity Catalysis of the reaction: (indol-3-yl)pyruvate + CoA + oxidized ferredoxin = S-2-(indol-3-yl)acetyl-CoA + CO2 + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl indolepyruvate oxidoreductase activity|IOR|3-(indol-3-yl)pyruvate:ferredoxin oxidoreductase (decarboxylating, CoA-indole-acetylating)|3-(indol-3-yl)pyruvate synthase (ferredoxin) activity RHEA:12645|MetaCyc:1.2.7.8-RXN|EC:1.2.7.8 molecular_function owl:Class GO:0016625 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulphur protein as acceptor EC:1.2.7.- molecular_function owl:Class GO:0016094 biolink:NamedThing polyprenol biosynthetic process The chemical reactions and pathways resulting in the formation of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. tmpzr1t_l9r_go_relaxed.owl polyprenol synthesis|polyprenol formation|polyprenol biosynthesis|polyprenol anabolism biological_process owl:Class GO:1900648 biolink:NamedThing positive regulation of chanoclavine-I aldehyde biosynthetic process Any process that activates or increases the frequency, rate or extent of chanoclavine-I aldehyde biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of chanoclavine-I aldehyde anabolism|positive regulation of chanoclavine-I aldehyde synthesis|up-regulation of chanoclavine-I aldehyde biosynthetic process|upregulation of chanoclavine-I aldehyde biosynthetic process|positive regulation of chanoclavine-I aldehyde anabolism|activation of chanoclavine-I aldehyde synthesis|positive regulation of chanoclavine-I aldehyde biosynthesis|up regulation of chanoclavine-I aldehyde synthesis|up regulation of chanoclavine-I aldehyde formation|up-regulation of chanoclavine-I aldehyde formation|activation of chanoclavine-I aldehyde formation|activation of chanoclavine-I aldehyde biosynthesis|upregulation of chanoclavine-I aldehyde formation|upregulation of chanoclavine-I aldehyde synthesis|upregulation of chanoclavine-I aldehyde biosynthesis|up-regulation of chanoclavine-I aldehyde biosynthesis|up regulation of chanoclavine-I aldehyde biosynthesis|up regulation of chanoclavine-I aldehyde anabolism|activation of chanoclavine-I aldehyde anabolism|positive regulation of chanoclavine-I aldehyde formation|up-regulation of chanoclavine-I aldehyde synthesis|activation of chanoclavine-I aldehyde biosynthetic process|up regulation of chanoclavine-I aldehyde biosynthetic process|upregulation of chanoclavine-I aldehyde anabolism di 2012-05-22T04:05:06Z biological_process owl:Class GO:2000991 biolink:NamedThing regulation of galactomannan catabolic process Any process that modulates the frequency, rate or extent of galactomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl tt 2011-08-08T03:15:53Z biological_process owl:Class GO:0070837 biolink:NamedThing dehydroascorbic acid transport The directed movement of dehydroascorbate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Dehydroascorbate, 5-(1,2-dihydroxyethyl)furan-2,3,4(5H)-trione, is an oxidized form of vitamin C. tmpzr1t_l9r_go_relaxed.owl dehydroascorbate transport mah 2009-07-30T05:24:31Z biological_process owl:Class GO:0051180 biolink:NamedThing vitamin transport The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl vitamin or cofactor transport biological_process owl:Class GO:0010628 biolink:NamedThing positive regulation of gene expression Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044623 biolink:NamedThing positive regulation of cell migration in other organism Any process that activates or increases the frequency, rate or extent of cell migration in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T04:44:59Z biological_process owl:Class GO:0044621 biolink:NamedThing modulation of cell migration in other organism The process in which an organism effects a change in the process of cell migration in a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of cell migration in other organism jl 2012-07-04T04:40:13Z biological_process owl:Class GO:0061096 biolink:NamedThing negative regulation of turning behavior involved in mating Any process that decreases the rate, frequency or extent of turning behavior involved in mating. Turning behavior is the sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:12:24Z biological_process owl:Class GO:1905788 biolink:NamedThing negative regulation of detection of mechanical stimulus involved in sensory perception of touch Any process that stops, prevents or reduces the frequency, rate or extent of detection of mechanical stimulus involved in sensory perception of touch. tmpzr1t_l9r_go_relaxed.owl negative regulation of perception of touch, detection of mechanical stimulus|negative regulation of tactition, sensory detection of mechanical stimulus|down regulation of sensory transduction of mechanical stimulus during perception of touch|downregulation of perception of touch, detection of mechanical stimulus|down regulation of detection of mechanical stimulus involved in sensory perception of touch|down-regulation of sensory transduction of mechanical stimulus during perception of touch|down-regulation of detection of mechanical stimulus involved in sensory perception of touch|inhibition of tactition, sensory detection of mechanical stimulus|down-regulation of perception of touch, detection of mechanical stimulus|inhibition of detection of mechanical stimulus involved in sensory perception of touch|down-regulation of sensory detection of mechanical stimulus during perception of touch|down-regulation of tactition, sensory detection of mechanical stimulus|downregulation of detection of mechanical stimulus involved in sensory perception of touch|negative regulation of perception of touch, sensory transduction of mechanical stimulus|inhibition of perception of touch, sensory detection of mechanical stimulus|downregulation of sensory transduction of mechanical stimulus during perception of touch|negative regulation of sensory detection of mechanical stimulus during perception of touch|inhibition of perception of touch, sensory transduction of mechanical stimulus|down regulation of tactition, sensory detection of mechanical stimulus|downregulation of perception of touch, sensory transduction of mechanical stimulus|negative regulation of perception of touch, sensory detection of mechanical stimulus|inhibition of sensory detection of mechanical stimulus during perception of touch|down regulation of sensory detection of mechanical stimulus during perception of touch|down regulation of perception of touch, sensory transduction of mechanical stimulus|downregulation of tactition, sensory detection of mechanical stimulus|down regulation of perception of touch, sensory detection of mechanical stimulus|down-regulation of perception of touch, sensory transduction of mechanical stimulus|down-regulation of perception of touch, sensory detection of mechanical stimulus|down regulation of perception of touch, detection of mechanical stimulus|downregulation of perception of touch, sensory detection of mechanical stimulus|negative regulation of sensory transduction of mechanical stimulus during perception of touch|inhibition of sensory transduction of mechanical stimulus during perception of touch|downregulation of sensory detection of mechanical stimulus during perception of touch|inhibition of perception of touch, detection of mechanical stimulus hbye 2017-01-09T15:11:14Z biological_process owl:Class GO:0031645 biolink:NamedThing negative regulation of nervous system process Any process that stops, prevents, or reduces the frequency, rate or extent of a neurophysiological process. tmpzr1t_l9r_go_relaxed.owl down regulation of neurological process|negative regulation of neurological process|downregulation of neurological process|negative regulation of neurophysiological process|negative regulation of neurological system process|inhibition of neurological process|down-regulation of neurological process biological_process owl:Class GO:1905828 biolink:NamedThing regulation of prostaglandin catabolic process Any process that modulates the frequency, rate or extent of prostaglandin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of prostaglandin breakdown|regulation of prostaglandin catabolism|regulation of prostaglandin degradation sl 2017-01-16T21:36:39Z biological_process owl:Class GO:1903641 biolink:NamedThing positive regulation of gastrin-induced gastric acid secretion Any process that activates or increases the frequency, rate or extent of gastrin-induced gastric acid secretion. tmpzr1t_l9r_go_relaxed.owl up regulation of gastrin-induced gastric acid secretion|activation of gastrin-induced gastric acid secretion|up-regulation of gastrin-induced gastric acid secretion|upregulation of gastrin-induced gastric acid secretion sl 2014-11-20T20:54:37Z biological_process owl:Class GO:0060454 biolink:NamedThing positive regulation of gastric acid secretion Any process that increases the rate frequency or extent of gastric secretion. Gastric secretion is the regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032102 biolink:NamedThing negative regulation of response to external stimulus Any process that stops, prevents, or reduces the frequency, rate or extent of a response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl inhibition of response to external stimulus|down-regulation of response to external stimulus|down regulation of response to external stimulus|downregulation of response to external stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0009860 biolink:NamedThing pollen tube growth Growth of pollen via tip extension of the intine wall. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018051 biolink:NamedThing C-terminal peptidyl-tryptophan amidation The formation of a C-terminal peptidyl-tryptophan amide by hydrolysis and oxidation of an interior Trp-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0098 biological_process owl:Class GO:0018211 biolink:NamedThing peptidyl-tryptophan modification The chemical alteration of a tryptophan residue in a peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060409 biolink:NamedThing positive regulation of acetylcholine metabolic process Any process that increases the rate, frequency or extent of the chemical reactions and pathways involving acetylcholine, the acetic acid ester of the organic base choline. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046723 biolink:NamedThing malic acid secretion The controlled release of malic acid, hydroxybutanedioic (hydroxysuccinic) acid, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl malate secretion|hydroxysuccinic acid secretion biological_process owl:Class GO:0046717 biolink:NamedThing acid secretion The controlled release of acid by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031552 biolink:NamedThing negative regulation of brain-derived neurotrophic factor-activated receptor activity Any process that stops, prevents, or reduces the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of BDNF receptor activity|downregulation of brain-derived neurotrophic factor receptor activity|down regulation of brain-derived neurotrophic factor receptor activity|negative regulation of brain-derived neurotrophic factor receptor activity|down-regulation of brain-derived neurotrophic factor receptor activity|inhibition of brain-derived neurotrophic factor receptor activity biological_process owl:Class GO:0071988 biolink:NamedThing protein localization to spindle pole body A process in which a protein is transported to, or maintained at, the spindle pole body. tmpzr1t_l9r_go_relaxed.owl protein localisation to spindle pole body mah 2010-10-25T10:56:33Z biological_process owl:Class GO:0140444 biolink:NamedThing cytoskeleton-nuclear membrane anchor activity The binding activity of a molecule that brings together a cytoskeletal protein or protein complex and a nuclear membrane lipid or membrane-associated protein, in order to maintain the localization of the cytoskeleton at a specific location of the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl nuclear membrane-cytoskeleton anchor activity|cytoskeletal protein-nuclear membrane anchor activity|cytoskeleton nuclear membrane anchor activity|cytoskeletal protein-nuclear membrane adaptor activity https://github.com/geneontology/go-ontology/issues/18283 pg 2020-03-24T14:57:59Z molecular_function owl:Class GO:0050668 biolink:NamedThing positive regulation of homocysteine metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving homocysteine. tmpzr1t_l9r_go_relaxed.owl positive regulation of homocysteine metabolism|positive regulation of Hcy metabolic process|activation of homocysteine metabolic process|upregulation of homocysteine metabolic process|stimulation of homocysteine metabolic process|up regulation of homocysteine metabolic process|up-regulation of homocysteine metabolic process|positive regulation of Hcy metabolism biological_process owl:Class GO:1903064 biolink:NamedThing positive regulation of reverse cholesterol transport Any process that activates or increases the frequency, rate or extent of reverse cholesterol transport. tmpzr1t_l9r_go_relaxed.owl up regulation of reverse cholesterol transport|up-regulation of reverse cholesterol transport|activation of reverse cholesterol transport|upregulation of reverse cholesterol transport rl 2014-05-28T15:15:40Z biological_process owl:Class GO:0090606 biolink:NamedThing single-species surface biofilm formation A process in which microorganisms produce an extracellular matrix and form multicellular aggregates at an air-liquid interface. tmpzr1t_l9r_go_relaxed.owl multicellular pellicle formation tb 2014-09-16T14:47:11Z GO:0032022 biological_process owl:Class GO:0090604 biolink:NamedThing surface biofilm formation A process in which planktonically growing microorganisms grow at the surface of a liquid-air interface and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-16T14:38:45Z biological_process owl:Class GO:0002321 biolink:NamedThing natural killer cell progenitor differentiation The process in which a precursor cell type acquires the specialized features of a natural killer cell progenitor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002320 biolink:NamedThing lymphoid progenitor cell differentiation The process in which a precursor cell type acquires the specialized features of a lymphoid progenitor cell. Lymphoid progenitor cells include progenitor cells for any of the lymphoid lineages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038161 biolink:NamedThing prolactin signaling pathway A series of molecular signals initiated by the binding of the peptide hormone prolactin to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl prolactin-mediated signaling pathway|PRL signaling pathway bf 2012-05-14T01:52:59Z biological_process owl:Class GO:0019394 biolink:NamedThing glucarate catabolic process The chemical reactions and pathways resulting in the breakdown of glucarate, the anion of glucaric acid. tmpzr1t_l9r_go_relaxed.owl glucarate degradation|glucarate catabolism|glucarate breakdown MetaCyc:GLUCARDEG-PWY biological_process owl:Class GO:0032586 biolink:NamedThing protein storage vacuole membrane The lipid bilayer surrounding a protein storage vacuole. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009705 biolink:NamedThing plant-type vacuole membrane The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl tonoplast|membrane of vacuole with cell cycle-independent morphology|vacuolar membrane cellular_component owl:Class GO:0042069 biolink:NamedThing regulation of catecholamine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catecholamines. tmpzr1t_l9r_go_relaxed.owl regulation of catecholamine metabolism biological_process owl:Class GO:0030893 biolink:NamedThing meiotic cohesin complex A cohesin complex that mediates sister chromatid cohesion during meiosis; has a subunit composition distinct from that of the mitotic cohesin complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008278 biolink:NamedThing cohesin complex A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3). tmpzr1t_l9r_go_relaxed.owl 9S cohesin|cohesin core heterodimer|SMC complex|14S cohesin|Smc1-Smc3 complex|SMC/kleisin ring complex GO:0008280|GO:0008279|GO:0043222 cellular_component owl:Class GO:0052639 biolink:NamedThing salicylic acid glucosyltransferase (ester-forming) activity Catalysis of the reaction: salicylic acid + UDP-glucose = salicylic acid glucose ester + UDP. tmpzr1t_l9r_go_relaxed.owl UDP:glucose:salicylate glucosyltransferase (ester-forming) activity|UDP:glucose:2-hydroxybenzoic acid glucosyltransferase (ester-forming) activity|salicylic acid glucosyltransferase activity|UDP:glucose:SA glucosyltransferase (ester-forming) activity|UDP:glucose:salicylic acid glucosyltransferase (ester-forming) activity RHEA:62316|MetaCyc:RXN-11659 molecular_function owl:Class GO:2000443 biolink:NamedThing regulation of toll-like receptor 21 signaling pathway Any process that modulates the frequency, rate or extent of toll-like receptor 21 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 21 signalling pathway|regulation of TLR21 signaling pathway bf 2011-03-04T10:31:48Z biological_process owl:Class GO:0080111 biolink:NamedThing DNA demethylation The removal of a methyl group from one or more nucleotides within an DNA molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T02:42:05Z biological_process owl:Class GO:0070988 biolink:NamedThing demethylation The process of removing one or more methyl groups from a molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-29T03:12:51Z biological_process owl:Class GO:1904175 biolink:NamedThing positive regulation of histone demethylase activity (H3-K4 specific) Any process that activates or increases the frequency, rate or extent of histone demethylase activity (H3-K4 specific). tmpzr1t_l9r_go_relaxed.owl upregulation of histone demethylase activity (H3-K4 specific)|activation of histone demethylase activity (H3-K4 specific)|up-regulation of histone demethylase activity (H3-K4 specific)|up regulation of histone demethylase activity (H3-K4 specific) dph 2015-04-24T19:29:45Z biological_process owl:Class GO:0031058 biolink:NamedThing positive regulation of histone modification Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone modification|upregulation of histone modification|up regulation of histone modification|stimulation of histone modification|activation of histone modification biological_process owl:Class GO:0018639 biolink:NamedThing xylene monooxygenase activity Catalysis of the reactions: toluene + 1/2 O2 = benzyl alcohol, and xylene + 1/2 O2 = methylbenzyl alcohol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0172|EC:1.14.13.- molecular_function owl:Class GO:0103089 biolink:NamedThing methylthiohexylmalate isomerase activity Catalysis of the reaction: 2-(6'-methylthio)hexylmalate <=> 3-(6'-methylthio)hexylmalate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4173 molecular_function owl:Class GO:0050486 biolink:NamedThing intramolecular transferase activity, transferring hydroxy groups Catalysis of the transfer of a hydroxyl group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl EC:5.4.4.- molecular_function owl:Class GO:0043634 biolink:NamedThing polyadenylation-dependent ncRNA catabolic process The chemical reactions and pathways resulting in the breakdown of a noncoding RNA (ncRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target ncRNA. tmpzr1t_l9r_go_relaxed.owl poly(A)-dependent ncRNA catabolic process biological_process owl:Class GO:2001031 biolink:NamedThing positive regulation of cellular glucuronidation Any process that activates or increases the frequency, rate or extent of cellular glucuronidation. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular glucuronide biosynthesis|positive regulation of cellular glucuronoside biosynthesis|positive regulation of cellular glucuronide biosynthetic process|positive regulation of cellular glucuronoside biosynthetic process rl 2011-08-22T01:10:59Z biological_process owl:Class GO:0072595 biolink:NamedThing maintenance of protein localization in organelle Any process in which a protein is maintained in a specific location a specific location on or in an organelle, and is prevented from moving elsewhere. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. tmpzr1t_l9r_go_relaxed.owl maintenance of protein localisation to organelle|maintenance of protein localization to organelle mah 2011-02-14T02:09:13Z biological_process owl:Class GO:2000771 biolink:NamedThing positive regulation of establishment or maintenance of cell polarity regulating cell shape Any process that activates or increases the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-22T01:56:55Z biological_process owl:Class GO:2000293 biolink:NamedThing negative regulation of defecation Any process that stops, prevents or reduces the frequency, rate or extent of defecation. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-21T09:23:13Z biological_process owl:Class GO:0042931 biolink:NamedThing enterobactin transmembrane transporter activity Enables the directed movement of the siderochrome enterochelin, a cyclic trimer of 2, 3 dihydroxybenzoylserine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl enterochelin transporter activity|enterobactin transporter activity molecular_function owl:Class GO:0040014 biolink:NamedThing regulation of multicellular organism growth Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size. tmpzr1t_l9r_go_relaxed.owl regulation of body growth|regulation of body size biological_process owl:Class GO:2001008 biolink:NamedThing positive regulation of cellulose biosynthetic process Any process that activates or increases the frequency, rate or extent of cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellulose anabolism|positive regulation of cellulose formation|positive regulation of cellulose biosynthesis|positive regulation of cellulose synthesis tt 2011-08-08T08:42:29Z biological_process owl:Class GO:1905270 biolink:NamedThing Meynert cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a Meynert cell. tmpzr1t_l9r_go_relaxed.owl cjm 2016-06-15T23:44:17Z biological_process owl:Class GO:1900222 biolink:NamedThing negative regulation of amyloid-beta clearance Any process that stops, prevents or reduces the frequency, rate or extent of amyloid-beta clearance. tmpzr1t_l9r_go_relaxed.owl negative regulation of beta-amyloid clearance|down regulation of beta-amyloid clearance|down-regulation of beta-amyloid clearance|inhibition of beta-amyloid clearance|downregulation of beta-amyloid clearance vk 2012-03-22T01:29:41Z biological_process owl:Class GO:1900221 biolink:NamedThing regulation of amyloid-beta clearance Any process that modulates the frequency, rate or extent of amyloid-beta clearance. tmpzr1t_l9r_go_relaxed.owl regulation of beta-amyloid clearance vk 2012-03-22T01:29:32Z biological_process owl:Class GO:0102792 biolink:NamedThing sinapaldehyde:NAD(P)+ oxidoreductase activity Catalysis of the reaction: sinapoyl aldehyde + NADP + H2O <=> 2 H+ + trans-sinapate + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8014 molecular_function owl:Class GO:0047170 biolink:NamedThing glucarate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: D-glucarate + sinapoyl-CoA = 2-O-sinapoyl-D-glucarate + CoA. tmpzr1t_l9r_go_relaxed.owl sinapoyl-CoA:glucarate O-(hydroxycinnamoyl)transferase activity KEGG_REACTION:R02899|MetaCyc:2.3.1.131-RXN|EC:2.3.1.131|RHEA:23308 molecular_function owl:Class GO:1903095 biolink:NamedThing ribonuclease III complex A protein complex which is capable of ribonuclease III activity. tmpzr1t_l9r_go_relaxed.owl An example of this is RNC in human (Q9NRR4) in PMID:22393237 (inferred from direct assay). bhm 2014-06-03T15:06:39Z cellular_component owl:Class GO:1902555 biolink:NamedThing endoribonuclease complex A protein complex which is capable of endoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl Ire1 complex homodimer|Ire1 complex homooligomer|Ire1 complex dimer An example is IRE1 in S. cerevisiae (UniProt ID P32361) in PMID:18191223 (inferred from direct assay). bhm 2013-12-06T16:09:31Z cellular_component owl:Class GO:0102649 biolink:NamedThing acetoacetyl-ACP synthase activity Catalysis of the reaction: acetyl-CoA + malonyl-CoA + H+ + a holo-[acyl-carrier protein] <=> acetoacetyl-ACP + 2 coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15810 molecular_function owl:Class GO:0010389 biolink:NamedThing regulation of G2/M transition of mitotic cell cycle Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic entry biological_process owl:Class GO:0061780 biolink:NamedThing mitotic cohesin loading The protein localization to chromatin by which a cohesin ring complex is topologically linked to DNA as part of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl dph 2016-08-23T13:00:34Z biological_process owl:Class GO:0104004 biolink:NamedThing cellular response to environmental stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an environmental stimulus. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-17T16:02:42Z biological_process owl:Class GO:1901815 biolink:NamedThing astaxanthin biosynthetic process The chemical reactions and pathways resulting in the formation of astaxanthin. tmpzr1t_l9r_go_relaxed.owl astaxanthin biosynthesis|astaxanthin formation|astaxanthin synthesis|astaxanthin anabolism yaf 2013-01-22T10:37:11Z biological_process owl:Class GO:0016123 biolink:NamedThing xanthophyll biosynthetic process The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids. tmpzr1t_l9r_go_relaxed.owl xanthophyll synthesis|xanthophyll biosynthesis|xanthophyll anabolism|xanthophyll formation biological_process owl:Class GO:0019267 biolink:NamedThing asparagine biosynthetic process from cysteine The chemical reactions and pathways resulting in the formation of asparagine from other compounds, including cysteine. tmpzr1t_l9r_go_relaxed.owl asparagine synthesis from cysteine|asparagine formation from cysteine|asparagine anabolism from cysteine MetaCyc:ASPSYNII-PWY biological_process owl:Class GO:0035642 biolink:NamedThing histone methyltransferase activity (H3-R17 specific) Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 17) = S-adenosyl-L-homocysteine + (histone H3)-N-methyl-arginine (position 17). This reaction is the addition of a methyl group to arginine at position 17 of histone H3. tmpzr1t_l9r_go_relaxed.owl histone-arginine N-methyltransferase activity (H3-R17 specific)|histone methylase activity (H3-R17 specific) bf 2011-01-19T10:41:43Z molecular_function owl:Class GO:0008469 biolink:NamedThing histone-arginine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (histone)-arginine = S-adenosyl-L-homocysteine + (histone)-N-methyl-arginine. tmpzr1t_l9r_go_relaxed.owl protein methylase I activity|histone protein methylase activity|histone-arginine N-methylase activity|histone protein methylase I|S-adenosyl-L-methionine:histone-arginine nomega-methyltransferase activity|nuclear protein (histone) N-methyltransferase activity|histone methyltransferase activity|S-adenosyl-L-methionine:histone-arginine omega-N-methyltransferase activity Reactome:R-HSA-8936584|Reactome:R-HSA-5661117|Reactome:R-HSA-8937113|Reactome:R-HSA-5205799|Reactome:R-HSA-8936608|Reactome:R-HSA-8937022|Reactome:R-HSA-5205861|Reactome:R-HSA-5216234 GO:0016276 molecular_function owl:Class GO:0140494 biolink:NamedThing migrasome A vesicular organelle that forms on retraction fibers behind migrating cells and mediates the release of cytoplasmic contents during cell migration. tmpzr1t_l9r_go_relaxed.owl pg 2020-07-10T15:09:40Z cellular_component owl:Class GO:0046697 biolink:NamedThing decidualization The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta. tmpzr1t_l9r_go_relaxed.owl decidual cell reaction Wikipedia:Decidualization biological_process owl:Class GO:0034841 biolink:NamedThing mentha-1,3-dione-CoA ligase activity Catalysis of the reaction: mentha-1,3-dione + CoASH = 3,7-dimethyl-5-oxo-octyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1186 molecular_function owl:Class GO:0110005 biolink:NamedThing positive regulation of tRNA C5-cytosine methylation Any process that activates or increases the frequency, rate or extent of tRNA C5-cytosine methylation. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0110004 biolink:NamedThing positive regulation of tRNA methylation Any process that activates or increases the frequency, rate or extent of tRNA methylation. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0019376 biolink:NamedThing galactolipid catabolic process The chemical reactions and pathways resulting in the breakdown of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. tmpzr1t_l9r_go_relaxed.owl galactolipid degradation|galactolipid breakdown|galactolipid catabolism biological_process owl:Class GO:0019374 biolink:NamedThing galactolipid metabolic process The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. tmpzr1t_l9r_go_relaxed.owl galactolipid metabolism biological_process owl:Class GO:0051892 biolink:NamedThing negative regulation of cardioblast differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of cardioblast differentiation, the process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl down-regulation of cardioblast differentiation|inhibition of cardioblast differentiation|downregulation of cardioblast differentiation|down regulation of cardioblast differentiation biological_process owl:Class GO:0016323 biolink:NamedThing basolateral plasma membrane The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000429 biolink:NamedThing carbon catabolite regulation of transcription from RNA polymerase II promoter A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter by carbon catabolites biological_process owl:Class GO:1900502 biolink:NamedThing positive regulation of butyryl-CoA catabolic process to butyrate Any process that activates or increases the frequency, rate or extent of butyryl-CoA catabolic process to butyrate. tmpzr1t_l9r_go_relaxed.owl up-regulation of butyryl-CoA catabolism to butyrate|up regulation of butyryl-CoA catabolism to butyrate|up regulation of butyryl-CoA catabolic process to butyrate|positive regulation of butyryl-CoA catabolism to butyrate|activation of butyryl-CoA catabolism to butyrate|activation of butyryl-CoA catabolic process to butyrate|up-regulation of butyryl-CoA catabolic process to butyrate|upregulation of butyryl-CoA catabolic process to butyrate|upregulation of butyryl-CoA catabolism to butyrate tt 2012-05-02T03:56:40Z biological_process owl:Class GO:0052714 biolink:NamedThing mannosyl-inositol phosphorylceramide phospholipase activity Catalysis of the reaction: mannosyl-inositol phosphorylceramide + H2O = C26-phytoceramide + mannosylphosphorylinositol. tmpzr1t_l9r_go_relaxed.owl ai 2011-08-05T08:02:57Z molecular_function owl:Class GO:0052713 biolink:NamedThing inositol phosphorylceramide phospholipase activity Catalysis of the reaction: inositol phosphorylceramide + H2O = C26-phytoceramide + phosphorylinositol. tmpzr1t_l9r_go_relaxed.owl ai 2011-08-05T04:51:03Z molecular_function owl:Class GO:0030642 biolink:NamedThing cellular sulfate ion homeostasis Any process involved in the maintenance of an internal steady state of sulfate ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl sulphate ion homeostasis biological_process owl:Class GO:0055063 biolink:NamedThing sulfate ion homeostasis Any process involved in the maintenance of an internal steady state of sulfate ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl sulphate ion homeostasis|sulfate homeostasis GO:0080174 biological_process owl:Class GO:1900114 biolink:NamedThing positive regulation of histone H3-K9 trimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K9 trimethylation. tmpzr1t_l9r_go_relaxed.owl upregulation of histone H3-K9 trimethylation|up-regulation of histone H3-K9 trimethylation|up regulation of histone H3-K9 trimethylation|activation of histone H3-K9 trimethylation bf 2012-02-21T09:09:58Z biological_process owl:Class GO:1905303 biolink:NamedThing positive regulation of macropinocytosis Any process that activates or increases the frequency, rate or extent of macropinocytosis. tmpzr1t_l9r_go_relaxed.owl activation of macropinocytosis|upregulation of macropinocytosis|up-regulation of macropinocytosis|up regulation of macropinocytosis pad 2016-07-04T14:16:49Z biological_process owl:Class GO:0008623 biolink:NamedThing CHRAC An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals, Isw2 in S. cerevisiae), an ACF1 homolog, and additional small histone fold subunits (generally two of these, but Xenopus has only one and some additional non-conserved subunits). CHRAC plays roles in the regulation of RNA polymerase II transcription and in DNA replication and repair. tmpzr1t_l9r_go_relaxed.owl ISW2 complex|chromatin accessibility complex GO:0016588 cellular_component owl:Class GO:0031010 biolink:NamedThing ISWI-type complex Any nuclear protein complex that contains an ATPase subunit of the imitation switch (ISWI) family. ISWI ATPases are involved in assembling chromatin and in sliding and spacing nucleosomes to regulate transcription of nuclear RNA polymerases I, II, and III and also DNA replication, recombination and repair. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042894 biolink:NamedThing fosmidomycin transport The directed movement of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051153 biolink:NamedThing regulation of striated muscle cell differentiation Any process that modulates the frequency, rate or extent of striated muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030272 biolink:NamedThing 5-formyltetrahydrofolate cyclo-ligase activity Catalysis of the reaction: 5-formyltetrahydrofolate + ATP = 5,10-methenyltetrahydrofolate + ADP + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl methenyl-THF synthetase activity|5-formyltetrahydrofolate cyclo-ligase (ADP-forming)|5,10-methenyltetrahydrofolate synthetase activity|5-Formyltetrahydrofolate cyclodehydrase activity|5-formyltetrahydrofolate cyclodehydrase|formyltetrahydrofolic cyclodehydrase activity EC:6.3.3.2|MetaCyc:5-FORMYL-THF-CYCLO-LIGASE-RXN|Reactome:R-HSA-6801342|KEGG_REACTION:R02301|RHEA:10488 GO:0019006 molecular_function owl:Class GO:0016882 biolink:NamedThing cyclo-ligase activity Catalysis of the joining of two groups within a single molecule via a carbon-nitrogen bond, forming heterocyclic ring, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.3.3.- molecular_function owl:Class GO:0005746 biolink:NamedThing mitochondrial respirasome The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl mitochondrial respiratory chain|mitochondrial respiratory chain supercomplex|mitochondrial electron transport chain|mitochondrial respiratory supercomplex https://github.com/geneontology/go-ontology/issues/12846 pr 2012-02-23T05:13:54Z GO:0097249 cellular_component owl:Class GO:0070469 biolink:NamedThing respirasome The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl membrane electron transport chain|respiratory chain https://github.com/geneontology/go-ontology/issues/12846 cellular_component owl:Class GO:0021594 biolink:NamedThing rhombomere formation The process that gives rise to the rhombomere. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070443 biolink:NamedThing Mad-Max complex A transcriptional repressor complex that consists of a heterodimer of the bHLH-ZIP proteins Mad and Max. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0080092 biolink:NamedThing regulation of pollen tube growth Any process that modulates the frequency, rate or extent of pollen tube growth. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T04:41:29Z biological_process owl:Class GO:0097478 biolink:NamedThing leaflet of membrane bilayer Any of the two layers of lipid molecules that constitute a membrane. tmpzr1t_l9r_go_relaxed.owl membrane leaflet pr 2013-05-07T14:24:37Z cellular_component owl:Class GO:0060408 biolink:NamedThing regulation of acetylcholine metabolic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving acetylcholine, the acetic acid ester of the organic base choline. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033238 biolink:NamedThing regulation of cellular amine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform amines. tmpzr1t_l9r_go_relaxed.owl regulation of amine metabolism biological_process owl:Class GO:1904661 biolink:NamedThing negative regulation of sensory perception of bitter taste Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of bitter taste. tmpzr1t_l9r_go_relaxed.owl downregulation of bitter taste perception|downregulation of sensory perception of bitter taste|inhibition of sensory perception of bitter taste|down-regulation of sensory perception of bitter taste|down regulation of bitter taste perception|negative regulation of bitter taste perception|down-regulation of bitter taste perception|down regulation of sensory perception of bitter taste|inhibition of bitter taste perception mr 2015-09-04T17:54:17Z biological_process owl:Class GO:1904660 biolink:NamedThing regulation of sensory perception of bitter taste Any process that modulates the frequency, rate or extent of sensory perception of bitter taste. tmpzr1t_l9r_go_relaxed.owl regulation of bitter taste perception mr 2015-09-04T17:54:10Z biological_process owl:Class GO:0090657 biolink:NamedThing telomeric loop disassembly The telomere maintenance process in which telomeric loops are disassembled to permit efficient telomere replication. tmpzr1t_l9r_go_relaxed.owl t-loop disassembly|T loop disassembly tb 2015-07-07T13:53:40Z biological_process owl:Class GO:1902513 biolink:NamedThing regulation of organelle transport along microtubule Any process that modulates the frequency, rate or extent of organelle transport along microtubule. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule-based organelle localization dph 2013-11-15T20:15:17Z biological_process owl:Class GO:0017128 biolink:NamedThing phospholipid scramblase activity Catalysis of the movement of phospholipids from one membrane bilayer leaflet to the other, by an ATP-independent mechanism. tmpzr1t_l9r_go_relaxed.owl Nomenclature note. Scramblases are ATP-independent, non-selective, translocases inducing non-specific transbilayer movements across the membrane. Flippases and floppases are ATP-dependent transbilayer lipid translocators. According to an extensively used, though not universal, nomenclature, they catalyze lipid transfer towards the inward monolayer (flippases) or towards the outward monolayer (floppases). molecular_function owl:Class GO:0005548 biolink:NamedThing phospholipid transporter activity Enables the directed movement of phospholipids into, out of or within a cell, or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-216757|Reactome:R-HSA-8857662|Reactome:R-HSA-382553|Reactome:R-HSA-8867876|Reactome:R-HSA-5678749|Reactome:R-HSA-5678706|Reactome:R-HSA-8865637 GO:0008497 molecular_function owl:Class GO:1900962 biolink:NamedThing regulation of methanophenazine biosynthetic process Any process that modulates the frequency, rate or extent of methanophenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of methanophenazine formation|regulation of methanophenazine anabolism|regulation of methanophenazine synthesis|regulation of methanophenazine biosynthesis tt 2012-06-14T03:53:15Z biological_process owl:Class GO:0048789 biolink:NamedThing cytoskeletal matrix organization at active zone The assembly and arrangement of cytomatrix proteins to form complexes in the cell cortex beneath the active zone, i.e. just beneath the presynaptic plasma membrane. tmpzr1t_l9r_go_relaxed.owl cytoskeletal matrix organisation at active zone biological_process owl:Class GO:0030562 biolink:NamedThing rRNA 2'-O-ribose methylation guide activity Specifies the site of 2'-O-ribose methylation in an rRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0030556 biolink:NamedThing rRNA modification guide activity Specifies the site of a posttranscriptional modification in an rRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0007320 biolink:NamedThing insemination The introduction of semen or sperm into the genital tract of a female. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Insemination biological_process owl:Class GO:1902956 biolink:NamedThing regulation of mitochondrial electron transport, NADH to ubiquinone Any process that modulates the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone. tmpzr1t_l9r_go_relaxed.owl regulation of complex I (NADH to ubiquinone)|regulation of oxidative phosphorylation, NADH to ubiquinone dph 2014-05-02T15:30:12Z biological_process owl:Class GO:0075525 biolink:NamedThing viral translational termination-reinitiation A process which occurs as part of viral mRNA translation which allows expression of a downstream open reading frame (ORF) in a dicistronic mRNA. In this process, ribosomes translate the upstream ORF but following termination, a proportion of 40S subunits remain tethered to the mRNA and go on to re-initiate translation at the start codon of the downstream ORF. tmpzr1t_l9r_go_relaxed.owl viral translation involving termination-reinitiation|termination reinitiation involved in viral translation|viral translation involving translational stop-start|viral translation involving termination re-initiation VZ:858 This term is intended to annotate gene products involved in the process of viral translational termination-reinitiation, not viral proteins produced by this translation process. jl 2011-08-04T12:01:22Z biological_process owl:Class GO:0045346 biolink:NamedThing regulation of MHC class II biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II. tmpzr1t_l9r_go_relaxed.owl regulation of major histocompatibility complex class II biosynthesis|regulation of MHC class II biosynthesis|regulation of MHC class II formation|regulation of MHC class II synthesis|regulation of major histocompatibility complex class II biosynthetic process|regulation of MHC class II anabolism biological_process owl:Class GO:0034218 biolink:NamedThing ascospore wall chitin metabolic process The chemical reactions and pathways involving ascospore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall chitin metabolism biological_process owl:Class GO:0070496 biolink:NamedThing positive regulation of thrombin-activated receptor signaling pathway Any process that activates or increases the frequency, rate or extent of thrombin-activated receptor protein signaling pathway activity. A thrombin receptor signaling pathway is the series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl positive regulation of thrombin receptor signaling pathway|positive regulation of thrombin receptor signalling pathway biological_process owl:Class GO:0061362 biolink:NamedThing negative regulation of maintenance of bipolar cell polarity regulating cell shape Any process that decreases the frequency, rate or extent of maintenance of bipolar cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T09:03:42Z biological_process owl:Class GO:2000750 biolink:NamedThing negative regulation of establishment or maintenance of bipolar cell polarity regulating cell shape Any process that stops, prevents or reduces the frequency, rate or extent of establishment or maintenance of bipolar cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-16T11:51:49Z biological_process owl:Class GO:0022880 biolink:NamedThing protein-N(PI)-phosphohistidine-N-acetylglucosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetylglucosamine(out) = protein histidine + N-acetylglucosamine phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine PTS transporter activity molecular_function owl:Class GO:0015572 biolink:NamedThing N-acetylglucosamine transmembrane transporter activity Enables the transfer of N-acetylglucosamine from one side of a membrane to the other. The D isomer of N-acetylglucosamine is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. tmpzr1t_l9r_go_relaxed.owl N-acetylchitosamine transmembrane transporter activity|D-GlcNAc transmembrane transporter activity|N-Acetyl-D-glucosamine permease|N-acetylglucosamine permease activity|N-acetyl-D-glucosamine transmembrane transporter activity GO:0015580 molecular_function owl:Class GO:0048787 biolink:NamedThing presynaptic active zone membrane The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl active zone presynaptic plasma membrane|active zone plasma membrane|pre-synaptic active zone membrane|active zone pre-synaptic plasma membrane NIF_Subcellular:sao2038461087 cellular_component owl:Class GO:0001161 biolink:NamedThing intronic transcription regulatory region sequence-specific DNA binding Binding to an intronic DNA sequence that regulates the transcription of the transcript it is contained within. tmpzr1t_l9r_go_relaxed.owl intronic transcription regulatory region DNA binding https://github.com/geneontology/go-ontology/issues/19312 To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. krc 2011-01-28T03:44:02Z GO:0044213 molecular_function owl:Class GO:0003136 biolink:NamedThing negative regulation of heart induction by canonical Wnt signaling pathway Any canonical Wnt signaling that decreases the rate, frequency or extent of heart induction. tmpzr1t_l9r_go_relaxed.owl negative regulation of heart induction by canonical Wnt receptor signalling pathway|negative regulation of cardioblast cell fate specification by Wnt receptor signaling pathway|negative regulation of heart induction by canonical Wnt-activated signaling pathway|negative regulation of heart induction by canonical Wnt receptor signaling pathway tb 2009-09-22T03:26:17Z biological_process owl:Class GO:0100012 biolink:NamedThing regulation of heart induction by canonical Wnt signaling pathway Any canonical Wnt signaling pathway process that regulates heart induction. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0061387 biolink:NamedThing regulation of extent of cell growth Any process that modulates the extent of cell growth. tmpzr1t_l9r_go_relaxed.owl dph 2011-07-14T10:15:42Z biological_process owl:Class GO:0090331 biolink:NamedThing negative regulation of platelet aggregation Any process that decreases the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl platelet disaggregation tb 2010-05-14T10:46:08Z biological_process owl:Class GO:0048024 biolink:NamedThing regulation of mRNA splicing, via spliceosome Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism. tmpzr1t_l9r_go_relaxed.owl regulation of pre-mRNA splicing|regulation of nuclear mRNA splicing via U2-type spliceosome|regulation of nuclear mRNA splicing, via spliceosome GO:0035055 biological_process owl:Class GO:0047212 biolink:NamedThing 2-coumarate O-beta-glucosyltransferase activity Catalysis of the reaction: trans-2-coumarate + UDP-D-glucose = trans-beta-D-glucosyl-2-hydroxycinnamate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:trans-2-hydroxycinnamate O-beta-D-glucosyltransferase activity|UDPG:o-coumaric acid O-glucosyltransferase activity|UDPglucose:trans-2-hydroxycinnamate O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-o-coumarate glucosyltransferase activity KEGG_REACTION:R03710|MetaCyc:2.4.1.114-RXN|RHEA:10236|EC:2.4.1.114 molecular_function owl:Class GO:0002266 biolink:NamedThing follicular dendritic cell activation A change in the morphology or behavior of a follicular dendritic cell resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032752 biolink:NamedThing positive regulation of interleukin-3 production Any process that activates or increases the frequency, rate, or extent of interleukin-3 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-3 production|activation of interleukin-3 production|up regulation of interleukin-3 production|upregulation of interleukin-3 production|positive regulation of IL-3 production|up-regulation of interleukin-3 production|positive regulation of interleukin-3 biosynthetic process GO:0045401 biological_process owl:Class GO:0039016 biolink:NamedThing cell-cell signaling involved in pronephros development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the pronephros over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in pronephros development|cell-cell signaling involved in pronephric kidney development bf 2010-07-02T10:03:16Z biological_process owl:Class GO:0052697 biolink:NamedThing xenobiotic glucuronidation The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion. tmpzr1t_l9r_go_relaxed.owl phase II metabolism ai 2011-07-27T05:37:50Z biological_process owl:Class GO:0075221 biolink:NamedThing negative regulation of zoospore encystment on host Any process that stops, prevents, or reduces the frequency, rate or extent of zoospore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043987 biolink:NamedThing histone H3-S10 phosphorylation The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 phosphorylation at S10|histone H3S10 phosphorylation GO:0043986 biological_process owl:Class GO:1990158 biolink:NamedThing DnaB-DnaC-DnaT-PriA-PriB complex A protein-DNA complex consisting of the helicase loading complex DnaB-DnaC, replication restart proteins DnaT, PriA and PriB, and associated DNA. Involved in the restart of DNA replication after a stalled replication fork has been repaired. tmpzr1t_l9r_go_relaxed.owl DnaB-DnaC-DnaT-PriA-PriB preprimosome|phi-X174-type preprimosome bhm 2013-08-02T11:52:55Z cellular_component owl:Class GO:0003254 biolink:NamedThing regulation of membrane depolarization Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-14T10:54:09Z biological_process owl:Class GO:0006227 biolink:NamedThing dUDP biosynthetic process The chemical reactions and pathways resulting in the formation of dUDP, deoxyuridine diphosphate (2'-deoxy-5'-uridylyl phosphate). tmpzr1t_l9r_go_relaxed.owl dUDP biosynthesis|dUDP synthesis|dUDP anabolism|dUDP formation biological_process owl:Class GO:0010988 biolink:NamedThing regulation of low-density lipoprotein particle clearance Any process that modulates the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:13:07Z biological_process owl:Class GO:0051410 biolink:NamedThing detoxification of nitrogen compound Any process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances. tmpzr1t_l9r_go_relaxed.owl nitric oxide (NO) detoxification|detoxification of nitrogenous compound biological_process owl:Class GO:0060889 biolink:NamedThing limb basal epidermal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal basal cell. A epidermal basal cell cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into more specialized cell of the limb epidermis. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:22:12Z biological_process owl:Class GO:1990714 biolink:NamedThing hydroxyproline O-galactosyltransferase activity Catalysis of the transfer of galactose from UDP-galactose to hydroxyproline residues present in the peptide backbone. tmpzr1t_l9r_go_relaxed.owl HPGT tb 2015-03-26T23:22:09Z molecular_function owl:Class GO:0008378 biolink:NamedThing galactosyltransferase activity Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1964501 molecular_function owl:Class GO:0021949 biolink:NamedThing brainstem precerebellar neuron precursor migration The early migration of a precerebellar neuronal precursor in which a cell move from the rhombic lip, orthogonal to the direction of radial migration and ultimately reside in the brainstem. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021934 biolink:NamedThing hindbrain tangential cell migration The migration of a cell in the hindbrain in which cells move orthogonal to the direction of radial migration. tmpzr1t_l9r_go_relaxed.owl hindbrain neurophilic migration biological_process owl:Class GO:1905725 biolink:NamedThing protein localization to microtubule end A process in which a protein is transported to, or maintained in, a location at a microtubule end. tmpzr1t_l9r_go_relaxed.owl protein localisation to microtubule end mah 2016-11-28T15:01:43Z biological_process owl:Class GO:0035372 biolink:NamedThing protein localization to microtubule A process in which a protein is transported to, or maintained at, a microtubule. tmpzr1t_l9r_go_relaxed.owl protein localisation to microtubule bf 2010-03-11T11:00:56Z biological_process owl:Class GO:0018907 biolink:NamedThing dimethyl sulfoxide metabolic process The chemical reactions and pathways involving dimethyl sulfoxide, DMSO (C2H6OS), an alkyl sulfoxide that is practically odorless in its purified form. As a highly polar organic liquid, it is a powerful solvent. Its biological activities include the ability to penetrate plant and animal tissues and to preserve living cells during freezing. tmpzr1t_l9r_go_relaxed.owl dimethyl sulfoxide metabolism|DMSO metabolism|DMSO metabolic process|dimethyl sulphoxide metabolic process|dimethyl sulphoxide metabolism UM-BBD_pathwayID:sulf biological_process owl:Class GO:1904410 biolink:NamedThing negative regulation of secretory granule organization Any process that stops, prevents or reduces the frequency, rate or extent of secretory granule organization. tmpzr1t_l9r_go_relaxed.owl down-regulation of secretory granule organisation|down regulation of secretory granule organization and biogenesis|downregulation of secretory granule organization and biogenesis|downregulation of secretory granule organization|down-regulation of secretory granule organization and biogenesis|down regulation of secretory granule organisation|down-regulation of secretory granule organization|downregulation of secretory granule organisation|inhibition of secretory granule organisation|negative regulation of secretory granule organisation|inhibition of secretory granule organization and biogenesis|inhibition of secretory granule organization|down regulation of secretory granule organization|negative regulation of secretory granule organization and biogenesis sl 2015-06-25T19:40:49Z biological_process owl:Class GO:0018441 biolink:NamedThing iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl L-serinyl octairon heptasulfide The incorporation of iron into a 8Fe-7S iron-sulfur cluster via hexakis-L-cysteinyl L-serinyl octairon heptasulfide, found in nitrogenase. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via hexakis-L-cysteinyl L-serinyl octairon heptasulphide RESID:AA0300 biological_process owl:Class GO:0035449 biolink:NamedThing extrinsic component of plastid thylakoid membrane The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl peripheral to plastid thylakoid membrane|extrinsic to plastid thylakoid membrane bf 2010-04-16T10:14:24Z cellular_component owl:Class GO:0070658 biolink:NamedThing neuromast hair cell differentiation involved in neuromast regeneration Differentiation of new neuromast sensory hair cells to replace those lost or destroyed by injury. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:16:27Z biological_process owl:Class GO:0048886 biolink:NamedThing neuromast hair cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuromast hair cell. Hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007503 biolink:NamedThing fat body development The process whose specific outcome is the progression of the fat body over time, from its formation to the mature structure. A fat body is an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010745 biolink:NamedThing negative regulation of macrophage derived foam cell differentiation Any process that decreases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042401 biolink:NamedThing cellular biogenic amine biosynthetic process The chemical reactions and pathways occurring at the level of individual cells resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. tmpzr1t_l9r_go_relaxed.owl biogenic amine formation|biogenic amine synthesis|biogenic amine biosynthesis|biogenic amine anabolism biological_process owl:Class GO:0070836 biolink:NamedThing caveola assembly The aggregation, arrangement and bonding together of a set of components to form a caveola. A caveola is a plasma membrane raft that forms a small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. tmpzr1t_l9r_go_relaxed.owl caveolar biogenesis|caveola formation mah 2009-07-30T04:45:54Z biological_process owl:Class GO:0044854 biolink:NamedThing plasma membrane raft assembly The aggregation, arrangement and bonding together of a set of components to form a plasma membrane raft. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T15:58:16Z biological_process owl:Class GO:1903452 biolink:NamedThing positive regulation of G1 to G0 transition Any process that activates or increases the frequency, rate or extent of G1 to G0 transition. tmpzr1t_l9r_go_relaxed.owl upregulation of stationary phase|upregulation of G1/G0 transition|up regulation of G1 to G0 transition|upregulation of G1 to G0 transition|activation of stationary phase|up regulation of cell cycle quiescence|up regulation of establishment of cell quiescence|positive regulation of G1/G0 transition|up-regulation of G1 to G0 transition|activation of establishment of cell quiescence|upregulation of establishment of cell quiescence|up-regulation of G1/G0 transition|up regulation of stationary phase|activation of cell cycle quiescence|positive regulation of cell cycle quiescence|positive regulation of establishment of cell quiescence|upregulation of cell cycle quiescence|up regulation of G1/G0 transition|activation of G1/G0 transition|positive regulation of stationary phase|activation of G1 to G0 transition|up-regulation of stationary phase|up-regulation of cell cycle quiescence|up-regulation of establishment of cell quiescence di 2014-09-19T22:23:30Z biological_process owl:Class GO:2000060 biolink:NamedThing positive regulation of ubiquitin-dependent protein catabolic process Any process that activates or increases the frequency, rate or extent of ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein ubiquitination during ubiquitin-dependent protein catabolism|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of protein degradation tagging activity|positive regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination during ubiquitin-dependent protein breakdown|positive regulation of protein ubiquitylation during ubiquitin-dependent protein catabolism|positive regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolism|positive regulation of protein ubiquitylation during ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination during ubiquitin-dependent protein degradation jl 2010-08-20T01:24:03Z biological_process owl:Class GO:1903052 biolink:NamedThing positive regulation of proteolysis involved in cellular protein catabolic process Any process that activates or increases the frequency, rate or extent of proteolysis involved in cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of peptidolysis involved in cellular protein catabolic process|activation of proteolysis during cellular protein catabolic process|upregulation of proteolysis during cellular protein catabolism|upregulation of peptidolysis involved in cellular protein catabolism|positive regulation of peptidolysis involved in cellular protein catabolism|upregulation of proteolysis involved in cellular protein catabolic process|upregulation of peptidolysis during cellular protein catabolic process|up-regulation of peptidolysis involved in cellular protein catabolic process|activation of peptidolysis involved in cellular protein catabolic process|activation of peptidolysis during cellular protein catabolic process|positive regulation of proteolysis during cellular protein catabolic process|up regulation of peptidolysis during cellular protein catabolism|up regulation of proteolysis during cellular protein catabolic process|positive regulation of proteolysis during cellular protein catabolism|activation of peptidolysis during cellular protein catabolism|up-regulation of peptidolysis during cellular protein catabolic process|up-regulation of proteolysis involved in cellular protein catabolic process|up-regulation of proteolysis during cellular protein catabolic process|up regulation of proteolysis during cellular protein catabolism|positive regulation of peptidolysis involved in cellular protein catabolic process|up regulation of peptidolysis involved in cellular protein catabolism|activation of peptidolysis involved in cellular protein catabolism|upregulation of peptidolysis involved in cellular protein catabolic process|up-regulation of peptidolysis during cellular protein catabolism|up-regulation of proteolysis during cellular protein catabolism|up regulation of proteolysis involved in cellular protein catabolic process|activation of proteolysis during cellular protein catabolism|up-regulation of peptidolysis involved in cellular protein catabolism|upregulation of peptidolysis during cellular protein catabolism|positive regulation of peptidolysis during cellular protein catabolic process|positive regulation of peptidolysis during cellular protein catabolism|up regulation of peptidolysis during cellular protein catabolic process|upregulation of proteolysis during cellular protein catabolic process|activation of proteolysis involved in cellular protein catabolic process overexpression of cathepsin C propeptide significantly increased the degradation of intestinal alkaline phosphatase (IAP) rl 2014-05-22T18:00:57Z biological_process owl:Class GO:0008327 biolink:NamedThing methyl-CpG binding Binding to a methylated cytosine/guanine dinucleotide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032345 biolink:NamedThing negative regulation of aldosterone metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving aldosterone. tmpzr1t_l9r_go_relaxed.owl down regulation of aldosterone metabolic process|downregulation of aldosterone metabolic process|inhibition of aldosterone metabolic process|down-regulation of aldosterone metabolic process|negative regulation of aldosterone metabolism biological_process owl:Class GO:0050900 biolink:NamedThing leukocyte migration The movement of a leukocyte within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl leukocyte trafficking|immune cell trafficking|leucocyte migration|leucocyte trafficking|immune cell migration biological_process owl:Class GO:1904233 biolink:NamedThing negative regulation of aconitate hydratase activity Any process that stops, prevents or reduces the frequency, rate or extent of aconitate hydratase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|down-regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|down-regulation of aconitase activity|negative regulation of cis-aconitase activity|down-regulation of aconitate hydratase activity|downregulation of aconitase activity|downregulation of citrate(isocitrate) hydro-lyase activity|down-regulation of cis-aconitase activity|inhibition of cis-aconitase activity|down regulation of aconitate hydratase activity|downregulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|down regulation of cis-aconitase activity|inhibition of aconitase activity|down-regulation of citrate(isocitrate) hydro-lyase activity|inhibition of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|down regulation of aconitase activity|downregulation of cis-aconitase activity|downregulation of aconitate hydratase activity|down regulation of citrate(isocitrate) hydro-lyase activity|negative regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|negative regulation of aconitase activity|inhibition of aconitate hydratase activity|negative regulation of citrate(isocitrate) hydro-lyase activity|inhibition of citrate(isocitrate) hydro-lyase activity rl 2015-05-15T09:55:23Z biological_process owl:Class GO:0051350 biolink:NamedThing negative regulation of lyase activity Any process that stops or reduces the rate of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. tmpzr1t_l9r_go_relaxed.owl down regulation of lyase activity|inhibition of lyase activity|lyase inhibitor|down-regulation of lyase activity|downregulation of lyase activity biological_process owl:Class GO:0019310 biolink:NamedThing inositol catabolic process The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl inositol degradation|inositol catabolism|vitamin Bh catabolism|myo-inositol catabolism|vitamin Bh catabolic process|myo-inositol catabolic process|inositol breakdown MetaCyc:P562-PWY biological_process owl:Class GO:1990763 biolink:NamedThing arrestin family protein binding Binding to a member of the arrestin family, proteins involved in agonist-mediated desensitization of G protein-coupled receptors. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-09T23:29:42Z molecular_function owl:Class GO:0050937 biolink:NamedThing regulation of iridophore differentiation Any process that modulates the frequency, rate or extent of iridophore differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015046 biolink:NamedThing rubredoxin-NADP+ reductase activity Catalysis of the reaction: reduced rubredoxin + NADP+ = oxidized rubredoxin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:13949|EC:1.18.1.4 molecular_function owl:Class GO:0015045 biolink:NamedThing rubredoxin-NAD(P)+ reductase activity Catalysis of the reaction: reduced rubredoxin + NAD(P)+ = oxidized rubredoxin + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H--rubredoxin oxidoreductase activity|dinucleotide phosphate reductase activity|rubredoxin:NAD(P)+ oxidoreductase activity|rubredoxin--nicotinamide adenine activity|NAD(P)--rubredoxin oxidoreductase activity|rubredoxin--nicotinamide adenine dinucleotide (phosphate) reductase activity|NADPH:rubredoxin reductase activity MetaCyc:RUBREDOXIN--NADP+-REDUCTASE-RXN|EC:1.18.1.4 molecular_function owl:Class GO:0030915 biolink:NamedThing Smc5-Smc6 complex A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902405 biolink:NamedThing mitotic actomyosin contractile ring localization Any actomyosin contractile ring localization that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle jl 2013-09-12T12:28:05Z biological_process owl:Class GO:0032688 biolink:NamedThing negative regulation of interferon-beta production Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-beta production. tmpzr1t_l9r_go_relaxed.owl negative regulation of IFN-beta production|down regulation of interferon-beta production|down-regulation of interferon-beta production|negative regulation of interferon-beta secretion|negative regulation of interferon-beta biosynthetic process|inhibition of interferon-beta production|downregulation of interferon-beta production GO:0045358|GO:0035548 biological_process owl:Class GO:0009689 biolink:NamedThing induction of phytoalexin biosynthetic process The activation of the chemical reactions and pathways resulting in the formation of phytoalexins, low-molecular mass, lipophilic antimicrobial compounds that accumulate rapidly at sites of incompatible pathogen infection. tmpzr1t_l9r_go_relaxed.owl induction of phytoalexin biosynthesis|induction of phytoalexin synthesis|induction of phytoalexin formation|induction of phytoalexin anabolism biological_process owl:Class GO:0060806 biolink:NamedThing negative regulation of cell differentiation involved in embryonic placenta development Any process that decreases the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-06T02:02:18Z biological_process owl:Class GO:0004334 biolink:NamedThing fumarylacetoacetase activity Catalysis of the reaction: 4-fumarylacetoacetate + H(2)O = acetoacetate + fumarate + H(+). tmpzr1t_l9r_go_relaxed.owl 4-fumarylacetoacetate fumarylhydrolase activity|fumarylacetoacetate hydrolase activity|beta-diketonase activity KEGG_REACTION:R01364|MetaCyc:FUMARYLACETOACETASE-RXN|UM-BBD_reactionID:r0107|EC:3.7.1.2|RHEA:10244|Reactome:R-HSA-71181 molecular_function owl:Class GO:0033945 biolink:NamedThing oligoxyloglucan reducing-end-specific cellobiohydrolase activity Catalysis of the hydrolysis of cellobiose from the reducing end of xyloglucans consisting of a beta-(1->4) linked glucan carrying alpha-D-xylosyl groups on O-6 of the glucose residues. To be a substrate, the first residue must be unsubstituted, the second residue may bear a xylosyl group, whether further glycosylated or not, and the third residue, which becomes the new terminus by the action of the enzyme, is preferably xylosylated, but this xylose residue must not be further substituted. tmpzr1t_l9r_go_relaxed.owl oligoxyloglucan reducing-end cellobiohydrolase activity|oligoxyloglucan reducing end-specific cellobiohydrolase activity MetaCyc:3.2.1.150-RXN|EC:3.2.1.150 molecular_function owl:Class GO:0007543 biolink:NamedThing sex determination, somatic-gonadal interaction The process that mediates the interactions between somatic cells and gonadal cells that ultimately results in the specification of sexual status of the organism. tmpzr1t_l9r_go_relaxed.owl sex determination, somatic/gonadal interaction biological_process owl:Class GO:0007154 biolink:NamedThing cell communication Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_signaling biological_process owl:Class GO:1901995 biolink:NamedThing positive regulation of meiotic cell cycle phase transition Any process that activates or increases the frequency, rate or extent of meiotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl up regulation of cell cycle transition|upregulation of meiotic cell cycle phase transition|activation of cell cycle transition|up-regulation of meiotic cell cycle phase transition|activation of meiotic cell cycle phase transition|upregulation of cell cycle transition|positive regulation of cell cycle transition|up-regulation of cell cycle transition|up regulation of meiotic cell cycle phase transition jl 2013-03-19T16:15:08Z biological_process owl:Class GO:0010113 biolink:NamedThing negative regulation of systemic acquired resistance Any process that stops, prevents, or reduces the frequency, rate or extent of systemic acquired resistance. tmpzr1t_l9r_go_relaxed.owl down-regulation of systemic acquired resistance|downregulation of systemic acquired resistance|down regulation of systemic acquired resistance|inhibition of systemic acquired resistance biological_process owl:Class GO:0051083 biolink:NamedThing 'de novo' cotranslational protein folding The process of assisting in the correct noncovalent assembly of the ribosome-bound nascent chains of a multidomain protein whilst other parts of the protein are still being translated. tmpzr1t_l9r_go_relaxed.owl multidomain protein assembly|nascent polypeptide association|'de novo' co-translational protein folding GO:0006444 biological_process owl:Class GO:0006458 biolink:NamedThing 'de novo' protein folding The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. tmpzr1t_l9r_go_relaxed.owl nascent chain protein folding biological_process owl:Class GO:0003316 biolink:NamedThing establishment of myocardial progenitor cell apical/basal polarity The specification and formation of the apicobasal polarity of an myocardial progenitor cell that contributes to the formation of the heart rudiment. tmpzr1t_l9r_go_relaxed.owl myocardial progenitor epithelial polarization dph 2009-10-27T09:01:26Z biological_process owl:Class GO:0071970 biolink:NamedThing fungal-type cell wall (1->3)-beta-D-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in fungal cell walls. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall beta-1,3-glucan formation|fungal-type cell wall 1,3-beta-D-glucan biosynthetic process|fungal-type cell wall beta-1,3-glucan anabolism|fungal-type cell wall beta-1,3-glucan synthesis|fungal-type cell wall 1,3-beta-glucan formation|fungal-type cell wall beta-1,3-glucan biosynthesis|fungal-type cell wall 1,3-beta-glucan biosynthesis|fungal-type cell wall 1,3-beta-glucan synthesis|fungal-type cell wall 1,3-beta-glucan anabolism|fungal-type cell wall beta-1,3-glucan biosynthetic process mah 2010-10-18T03:25:56Z biological_process owl:Class GO:0070880 biolink:NamedThing fungal-type cell wall beta-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall beta-glucan formation|fungal-type cell wall beta-glucan anabolism|fungal-type cell wall beta-glucan biosynthesis|fungal-type cell wall beta-glucan synthesis mah 2009-08-21T02:48:24Z biological_process owl:Class GO:0071409 biolink:NamedThing cellular response to cycloheximide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes. tmpzr1t_l9r_go_relaxed.owl cellular response to actidione mah 2009-12-14T02:57:24Z biological_process owl:Class GO:0046898 biolink:NamedThing response to cycloheximide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes. tmpzr1t_l9r_go_relaxed.owl response to actidione biological_process owl:Class GO:1905142 biolink:NamedThing positive regulation of apical ectodermal ridge formation Any process that activates or increases the frequency, rate or extent of apical ectodermal ridge formation. tmpzr1t_l9r_go_relaxed.owl activation of AER formation|positive regulation of crista ectodermalis apicalis formation|upregulation of apical ectodermal ridge formation|up-regulation of apical ectodermal ridge formation|positive regulation of apical epidermal ridge formation|up regulation of apical epidermal ridge formation|upregulation of AER formation|up-regulation of apical epidermal ridge formation|up-regulation of AER formation|up regulation of apical ectodermal ridge formation|up regulation of crista ectodermalis apicalis formation|upregulation of crista ectodermalis apicalis formation|up regulation of AER formation|positive regulation of AER formation|upregulation of apical epidermal ridge formation|up-regulation of crista ectodermalis apicalis formation dph 2016-04-13T12:16:57Z biological_process owl:Class GO:1903429 biolink:NamedThing regulation of cell maturation Any process that modulates the frequency, rate or extent of cell maturation. tmpzr1t_l9r_go_relaxed.owl regulation of functional differentiation jl 2014-09-15T13:31:23Z biological_process owl:Class GO:1990737 biolink:NamedThing response to manganese-induced endoplasmic reticulum stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of endoplasmic reticulum stress caused by a manganese stimulus. tmpzr1t_l9r_go_relaxed.owl manganese-induced ER stress response|response to Mn-induced ER stress|response to manganese-induced ER stress bf 2015-04-30T13:48:45Z biological_process owl:Class GO:0002015 biolink:NamedThing regulation of systemic arterial blood pressure by atrial baroreceptor feedback A process that controls blood pressure by sensing the amount of stretch occurring in the atria. tmpzr1t_l9r_go_relaxed.owl atrial baroreceptor regulation of systemic arterial blood pressure|atrial reflex|atrial control of blood pressure|atrial low pressure baroreceptor regulation of blood pressure biological_process owl:Class GO:0003015 biolink:NamedThing heart process A circulatory system process carried out by the heart. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. tmpzr1t_l9r_go_relaxed.owl cardiac process biological_process owl:Class GO:1901507 biolink:NamedThing negative regulation of acylglycerol transport Any process that stops, prevents or reduces the frequency, rate or extent of acylglycerol transport. tmpzr1t_l9r_go_relaxed.owl inhibition of acylglycerol transport|down-regulation of glyceride transport|negative regulation of glyceride transport|down-regulation of acylglycerol transport|downregulation of acylglycerol transport|inhibition of glyceride transport|downregulation of glyceride transport|down regulation of acylglycerol transport|down regulation of glyceride transport sart 2012-10-17T11:06:18Z biological_process owl:Class GO:0004823 biolink:NamedThing leucine-tRNA ligase activity Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu). tmpzr1t_l9r_go_relaxed.owl leucyl-transfer RNA synthetase activity|leucine translase activity|leucyl-transfer ribonucleic acid synthetase activity|leucyl-tRNA synthetase activity|leucine-tRNA synthetase activity|leucyl-transfer ribonucleate synthetase activity|L-leucine:tRNALeu ligase (AMP-forming) KEGG_REACTION:R03657|EC:6.1.1.4|Reactome:R-HSA-379974|MetaCyc:LEUCINE--TRNA-LIGASE-RXN|Reactome:R-HSA-380200|RHEA:11688 molecular_function owl:Class GO:0035489 biolink:NamedThing guanine/guanine mispair binding Binding to a double-stranded DNA region containing a G/G mispair. tmpzr1t_l9r_go_relaxed.owl G/G mispair binding bf 2010-04-23T11:16:55Z molecular_function owl:Class GO:1990220 biolink:NamedThing GroEL-GroES complex Bacterial chaperonin complex consisting of a heptameric 10kDa chaperonin subunit GroES and a tetradecameric (2x7) 60kDa chaperonin subunit GroEL. The 60kDa subunit possesses ATPase activity while the holo-enzyme is responsible for the correct folding of proteins. tmpzr1t_l9r_go_relaxed.owl bacterial chaperonin ATPase complex|bacterial chaperonin complex bhm 2013-10-11T09:20:01Z cellular_component owl:Class GO:0016465 biolink:NamedThing chaperonin ATPase complex Multisubunit protein complex with 2x7 (Type I, in most cells) or 2x8 (Type II, in Archaea) ATP-binding sites involved in maintaining an unfolded polypeptide structure before folding or to entry into mitochondria and chloroplasts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000749 biolink:NamedThing positive regulation of rDNA heterochromatin assembly Any process that activates or increases the frequency, rate or extent of assembly of rDNA heterochromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of rDNA chromatin silencing|positive regulation of ribosomal DNA heterochromatin assembly|positive regulation of heterochromatic silencing at rDNA|positive regulation of chromatin silencing at rDNA|positive regulation of chromatin silencing at ribosomal DNA https://github.com/geneontology/go-ontology/issues/19238 pr 2011-06-16T09:43:55Z biological_process owl:Class GO:1904730 biolink:NamedThing negative regulation of intestinal lipid absorption Any process that stops, prevents or reduces the frequency, rate or extent of intestinal lipid absorption. tmpzr1t_l9r_go_relaxed.owl downregulation of intestinal lipid absorption|down-regulation of intestinal lipid absorption|down regulation of intestinal lipid absorption|inhibition of intestinal lipid absorption sl 2015-10-14T15:25:03Z biological_process owl:Class GO:1904729 biolink:NamedThing regulation of intestinal lipid absorption Any process that modulates the frequency, rate or extent of intestinal lipid absorption. tmpzr1t_l9r_go_relaxed.owl sl 2015-10-14T15:24:56Z biological_process owl:Class GO:0017010 biolink:NamedThing protein-phycourobilin linkage The linkage of the chromophore phycourobilin to phycoerythrins. tmpzr1t_l9r_go_relaxed.owl RESID:AA0260 biological_process owl:Class GO:0034140 biolink:NamedThing negative regulation of toll-like receptor 3 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR3 signaling pathway|negative regulation of toll-like receptor 3 signalling pathway biological_process owl:Class GO:0032262 biolink:NamedThing pyrimidine nucleotide salvage Any process which produces a pyrimidine nucleotide from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006221 biolink:NamedThing pyrimidine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleotide synthesis|pyrimidine nucleotide biosynthesis|pyrimidine nucleotide formation|pyrimidine nucleotide anabolism biological_process owl:Class GO:0045975 biolink:NamedThing positive regulation of translation, ncRNA-mediated Any process, mediated by small non-coding RNAs, that activates or increases the rate that mRNAs are effectively translated into protein. tmpzr1t_l9r_go_relaxed.owl up-regulation of mRNA translation, ncRNA-mediated|up regulation of mRNA translation, ncRNA-mediated|activation of mRNA translation, ncRNA-mediated|upregulation of mRNA translation, ncRNA-mediated|stimulation of mRNA translation, ncRNA-mediated biological_process owl:Class GO:0009991 biolink:NamedThing response to extracellular stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048768 biolink:NamedThing root hair cell tip growth Localized growth of a plant root hair tip by extension of the cell wall. tmpzr1t_l9r_go_relaxed.owl root hair tip growth biological_process owl:Class GO:0009932 biolink:NamedThing cell tip growth Growth that occurs specifically at the tip of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902815 biolink:NamedThing N,N'-diacetylchitobiose import The directed movement of N,N'-diacetylchitobiose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl tb 2014-03-27T20:58:58Z biological_process owl:Class GO:0031952 biolink:NamedThing regulation of protein autophosphorylation Any process that modulates the frequency, rate or extent of addition of the phosphorylation by a protein of one or more of its own residues. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid autophosphorylation biological_process owl:Class GO:0045300 biolink:NamedThing acyl-[acyl-carrier-protein] desaturase activity Catalysis of the reaction: stearoyl-[acyl-carrier protein] + reduced acceptor + O2 = oleoyl-[acyl-carrier protein] + acceptor + H2O. The enzyme requires ferredoxin. tmpzr1t_l9r_go_relaxed.owl stearyl-ACP desaturase activity|stearyl acyl carrier protein desaturase activity|acyl-[acyl-carrier protein] desaturase activity|acyl-acyl-carrier-protein, hydrogen-donor:oxygen oxidoreductase activity|acyl-acyl-carrier-protein desaturase activity MetaCyc:PWY-5147|MetaCyc:1.14.19.2-RXN|EC:1.14.19.2 Note that this function was formerly EC:1.14.99.6. molecular_function owl:Class GO:1901865 biolink:NamedThing capsorubin catabolic process The chemical reactions and pathways resulting in the breakdown of capsorubin. tmpzr1t_l9r_go_relaxed.owl capsorubin catabolism|capsorubin degradation|capsorubin breakdown yaf 2013-02-04T10:50:17Z biological_process owl:Class GO:1901864 biolink:NamedThing capsorubin metabolic process The chemical reactions and pathways involving capsorubin. tmpzr1t_l9r_go_relaxed.owl capsorubin metabolism yaf 2013-02-04T10:50:13Z biological_process owl:Class GO:0045950 biolink:NamedThing negative regulation of mitotic recombination Any process that inhibits or decreases the rate of DNA recombination during mitosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of mitotic recombination|inhibition of mitotic recombination|downregulation of mitotic recombination|negative regulation of recombination within rDNA repeats|down regulation of mitotic recombination biological_process owl:Class GO:0070375 biolink:NamedThing ERK5 cascade An intracellular protein kinase cascade containing at least ERK5 (also called BMK1; a MAPK), a MEK (a MAPKK) and a MAP3K. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. tmpzr1t_l9r_go_relaxed.owl ERK5 signaling pathway|MAPK7 cascade|BMK signalling pathway|extracellular signal-regulated kinase 5 cascade|BMK1 cascade|BMK signaling pathway|BMK cascade|big MAP kinase signaling cascade biological_process owl:Class GO:0006808 biolink:NamedThing regulation of nitrogen utilization Any process that modulates the frequency, rate or extent of nitrogen utilization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019740 biolink:NamedThing nitrogen utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary nitrogen source, usually ammonia, and then activates genes to scavenge the last traces of the primary nitrogen source and to transport and metabolize alternative nitrogen sources. The utilization process begins when the cell or organism detects nitrogen levels, includes the activation of genes whose products detect, transport or metabolize nitrogen-containing substances, and ends when nitrogen is incorporated into the cell or organism's metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014040 biolink:NamedThing positive regulation of Schwann cell differentiation Any process that activates or increases the frequency, rate or extent of Schwann cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of Schwann cell differentiation|activation of Schwann cell differentiation|upregulation of Schwann cell differentiation|stimulation of Schwann cell differentiation|up regulation of Schwann cell differentiation biological_process owl:Class GO:0014037 biolink:NamedThing Schwann cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010465 biolink:NamedThing nerve growth factor receptor activity Combining with nerve growth factor (NGF), to prevent apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl NGF receptor activity|beta-nerve growth factor receptor activity molecular_function owl:Class GO:0010845 biolink:NamedThing positive regulation of reciprocal meiotic recombination Any process that increases the frequency, rate or extent of recombination during meiosis. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl positive regulation of meiotic recombination biological_process owl:Class GO:0021701 biolink:NamedThing cerebellar Golgi cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar Golgi cell. Differentiation includes the processes involved in commitment of a neuroblast to a Golgi cell fate. A cerebellar Golgi cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901414 biolink:NamedThing negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole biosynthetic process from glycine and succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl down-regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|negative regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|downregulation of tetrapyrrole anabolism from glycine and succinyl-CoA|down regulation of tetrapyrrole formation from glycine and succinyl-CoA|down regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|inhibition of tetrapyrrole biosynthesis from glycine and succinyl-CoA|down regulation of tetrapyrrole synthesis from glycine and succinyl-CoA|inhibition of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|down-regulation of tetrapyrrole formation from glycine and succinyl-CoA|down-regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|inhibition of tetrapyrrole synthesis from glycine and succinyl-CoA|downregulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|down-regulation of tetrapyrrole synthesis from glycine and succinyl-CoA|negative regulation of tetrapyrrole formation from glycine and succinyl-CoA|down regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|downregulation of tetrapyrrole formation from glycine and succinyl-CoA|down-regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|negative regulation of tetrapyrrole synthesis from glycine and succinyl-CoA|inhibition of tetrapyrrole anabolism from glycine and succinyl-CoA|down regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|negative regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|inhibition of tetrapyrrole formation from glycine and succinyl-CoA|downregulation of tetrapyrrole synthesis from glycine and succinyl-CoA|downregulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA tt 2012-10-01T16:28:54Z biological_process owl:Class GO:0033527 biolink:NamedThing tetrapyrrole biosynthetic process from glycine and succinyl-CoA The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next, from other compounds, including glycine and succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl tetrapyrrole synthesis from glycine and succinyl-CoA|tetrapyrrole anabolism from glycine and succinyl-CoA|tetrapyrrole biosynthesis from glycine and succinyl-CoA|tetrapyrrole formation from glycine and succinyl-CoA MetaCyc:PWY-5189 biological_process owl:Class GO:2000586 biolink:NamedThing regulation of platelet-derived growth factor receptor-beta signaling pathway Any process that modulates the frequency, rate or extent of platelet-derived growth factor receptor-beta signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of betaPDGF receptor signaling pathway|regulation of PDGF receptor-beta signaling pathway|regulation of PDGFR-beta signaling pathway|regulation of platelet-derived growth factor receptor-beta signalling pathway bf 2011-04-07T03:27:48Z biological_process owl:Class GO:0035791 biolink:NamedThing platelet-derived growth factor receptor-beta signaling pathway A series of molecular signals initiated by the binding of a ligand to a beta-type platelet-derived growth factor receptor (PDGFbeta) on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl platelet-derived growth factor receptor-beta signalling pathway|PDGFR-beta signaling pathway|PDGF receptor-beta signaling pathway|betaPDGF receptor signaling pathway bf 2011-04-06T10:57:04Z biological_process owl:Class GO:1904058 biolink:NamedThing positive regulation of sensory perception of pain Any process that activates or increases the frequency, rate or extent of sensory perception of pain. tmpzr1t_l9r_go_relaxed.owl positive regulation of nociception|activation of sensory perception of pain|upregulation of nociception|up-regulation of sensory perception of pain|positive regulation of perception of physiological pain|activation of nociception|up-regulation of perception of physiological pain|up regulation of perception of physiological pain|activation of perception of physiological pain|upregulation of perception of physiological pain|upregulation of sensory perception of pain|up-regulation of nociception|up regulation of nociception|up regulation of sensory perception of pain sl 2015-03-18T20:34:03Z biological_process owl:Class GO:0098719 biolink:NamedThing sodium ion import across plasma membrane The directed movement of sodium ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl sodium ion import into cell|sodium import|sodium ion import pr 2012-08-03T16:55:52Z GO:0097369|GO:1990118 biological_process owl:Class GO:0008537 biolink:NamedThing proteasome activator complex A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex. tmpzr1t_l9r_go_relaxed.owl PA28 cellular_component owl:Class GO:0022624 biolink:NamedThing proteasome accessory complex A protein complex, that caps one or both ends of the proteasome core complex and regulates entry into, or exit from, the proteasome core complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990730 biolink:NamedThing VCP-NSFL1C complex A protein complex between the ATPase VCP (p97) and its cofactor p47 (NSFL1C). In human, the protein complex consists of one homotrimer of NSFL1C/p47 per homohexamer of VCP/p97. tmpzr1t_l9r_go_relaxed.owl p97-p47 complex bf 2015-04-20T12:27:35Z cellular_component owl:Class GO:0005737 biolink:NamedThing cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cytoplasm cellular_component owl:Class GO:1901587 biolink:NamedThing positive regulation of acid-sensing ion channel activity Any process that activates or increases the frequency, rate or extent of acid-sensing ion channel activity. tmpzr1t_l9r_go_relaxed.owl activation of acid-sensing ion channel activity|activation of ASIC activity|positive regulation of ASIC activity|up regulation of ASIC activity|up-regulation of acid-sensing ion channel activity|up-regulation of ASIC activity|upregulation of ASIC activity|upregulation of acid-sensing ion channel activity|up regulation of acid-sensing ion channel activity jl 2012-11-07T13:37:37Z biological_process owl:Class GO:0044736 biolink:NamedThing acid-sensing ion channel activity Enables the transmembrane transfer of a sodium ion by a neuronal, voltage-insensitive channel that opens when an extracellular proton has been bound by the channel complex. tmpzr1t_l9r_go_relaxed.owl ASIC activity Wikipedia:Acid-sensing_ion_channel|Reactome:R-HSA-2671885 jl 2012-11-06T16:36:37Z molecular_function owl:Class GO:0046552 biolink:NamedThing photoreceptor cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046530 biolink:NamedThing photoreceptor cell differentiation The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl GO:0007467 biological_process owl:Class GO:1900841 biolink:NamedThing negative regulation of helvolic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of helvolic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of helvolic acid biosynthetic process|down regulation of helvolic acid biosynthetic process|downregulation of helvolic acid biosynthetic process di 2012-06-07T09:38:57Z biological_process owl:Class GO:1900812 biolink:NamedThing helvolic acid biosynthetic process The chemical reactions and pathways resulting in the formation of helvolic acid. tmpzr1t_l9r_go_relaxed.owl Fumigacin anabolism|helvolic acid anabolism|helvolic acid formation|Fumigacin formation|Fumigacin synthesis|helvolic acid synthesis|Fumigacin biosynthetic process|Fumigacin biosynthesis|helvolic acid biosynthesis di 2012-06-04T10:02:58Z biological_process owl:Class GO:0048077 biolink:NamedThing negative regulation of compound eye pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in the compound eye. tmpzr1t_l9r_go_relaxed.owl inhibition of eye pigmentation|negative regulation of eye pigmentation|downregulation of eye pigmentation|down-regulation of eye pigmentation|down regulation of eye pigmentation biological_process owl:Class GO:0048072 biolink:NamedThing compound eye pigmentation Establishment of a pattern of pigment in the compound eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090637 biolink:NamedThing inner dense plaque of desmosome The desmosomal part containing the C-termini of desmoplakins which interact with the keratin intermediate filaments, serving to tether the intermediate filaments to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-20T16:10:51Z cellular_component owl:Class GO:0030057 biolink:NamedThing desmosome A cell-cell junction in which: on the cytoplasmic surface of each interacting plasma membrane is a dense plaque composed of a mixture of intracellular anchor proteins; a bundle of keratin intermediate filaments is attached to the surface of each plaque; transmembrane adhesion proteins of the cadherin family bind to the plaques and interact through their extracellular domains to hold the adjacent membranes together by a Ca2+-dependent mechanism. tmpzr1t_l9r_go_relaxed.owl spot desmosome|macula adherens Wikipedia:Desmosome cellular_component owl:Class GO:1904735 biolink:NamedThing regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase Any process that modulates the frequency, rate or extent of fatty acid beta-oxidation using acyl-CoA dehydrogenase. tmpzr1t_l9r_go_relaxed.owl lb 2015-10-15T08:14:51Z biological_process owl:Class GO:0033539 biolink:NamedThing fatty acid beta-oxidation using acyl-CoA dehydrogenase A fatty acid beta-oxidation pathway in which the initial step of each oxidation cycle, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA dehydrogenase; the electrons removed by oxidation pass through the respiratory chain to oxygen and leave H2O as the product. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl MetaCyc:FAO-PWY biological_process owl:Class GO:0034260 biolink:NamedThing negative regulation of GTPase activity Any process that stops or reduces the rate of GTP hydrolysis by a GTPase. tmpzr1t_l9r_go_relaxed.owl inhibition of Ras GTPase activity|downregulation of regulation of Ran GTPase activity|down-regulation of regulation of Ran GTPase activity|inhibition of Rab GTPase activity|down regulation of regulation of Ran GTPase activity|down regulation of Ras GTPase activity|downregulation of GTPase activity|negative regulation of Rab GTPase activity|down regulation of Rho GTPase activity|inhibition of Rho GTPase activity|negative regulation of Ras GTPase activity|down-regulation of Rab GTPase activity|negative regulation of Rho GTPase activity|down-regulation of Ras GTPase activity|downregulation of Ras GTPase activity|down regulation of Rab GTPase activity|inhibition of regulation of Ran GTPase activity|down-regulation of GTPase activity|negative regulation of Ran GTPase activity|down-regulation of Rho GTPase activity|negative regulation of guanosinetriphosphatase activity|downregulation of Rho GTPase activity|downregulation of Rab GTPase activity|inhibition of GTPase activity|down regulation of GTPase activity An example of this is P2xA in Dictyostelium (UniProt symbol Q86JM7) in PMID:24335649. GO:1902264|GO:1902881|GO:0034261|GO:0034259 biological_process owl:Class GO:0003924 biolink:NamedThing GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl dynamin GTPase activity|ARF small monomeric GTPase activity|Rho small monomeric GTPase activity|heterotrimeric G-protein GTPase, alpha-subunit|GTPase activity, coupled|protein-synthesizing GTPase activity, termination|signal-recognition-particle GTPase activity|protein-synthesizing GTPase activity|hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement|Sar small monomeric GTPase activity|Ran small monomeric GTPase activity|protein-synthesizing GTPase activity, initiation|Ras small monomeric GTPase activity|Rab small monomeric GTPase activity|small monomeric GTPase activity|heterotrimeric G-protein GTPase activity|RHEB small monomeric GTPase activity|protein-synthesizing GTPase activity, elongation|tubulin GTPase activity|heterotrimeric G-protein GTPase, beta-subunit|heterotrimeric G-protein GTPase, gamma-subunit https://github.com/geneontology/go-ontology/issues/19078 Reactome:R-HSA-5672017|Reactome:R-HSA-8854255|Reactome:R-HSA-5389842|Reactome:R-HSA-421835|Reactome:R-HSA-380979|Reactome:R-HSA-165055|Reactome:R-HSA-170666|Reactome:R-HSA-164381|Reactome:R-HSA-9640195|Reactome:R-HSA-5658231|Reactome:R-HSA-5623513|Reactome:R-HSA-392212|Reactome:R-HSA-8854612|Reactome:R-HSA-177501|Reactome:R-HSA-9649736|Reactome:R-HSA-555065|Reactome:R-HSA-5638006|Reactome:R-HSA-8847883|Reactome:R-HSA-5665809|Reactome:R-HSA-8981353|Reactome:R-HSA-9645598|Reactome:R-HSA-418574|Reactome:R-HSA-167415|Reactome:R-HSA-392133|Reactome:R-HSA-203973|Reactome:R-HSA-8868661|Reactome:R-HSA-5419273|Reactome:R-HSA-2584246|Reactome:R-HSA-1458485|Reactome:R-HSA-170685|Reactome:R-HSA-418582|Reactome:R-HSA-8854173|Reactome:R-HSA-1445143|Reactome:R-HSA-983422|Reactome:R-HSA-432707|Reactome:R-HSA-156923|Reactome:R-HSA-2130725|Reactome:R-HSA-428941|Reactome:R-HSA-6807877|Reactome:R-HSA-5389839|Reactome:R-HSA-5333615|Reactome:R-HSA-6814833|Reactome:R-HSA-170686|Reactome:R-HSA-8982025|Reactome:R-HSA-2130641|Reactome:R-HSA-8982020|Reactome:R-HSA-5694527|Reactome:R-HSA-8854329|Reactome:R-HSA-8982021|RHEA:19669|Reactome:R-HSA-8854604|Reactome:R-HSA-8847534|Reactome:R-HSA-8849082|Reactome:R-HSA-5419279 dph 2015-11-11T12:47:56Z GO:0061745 molecular_function owl:Class GO:0090658 biolink:NamedThing cone matrix sheath A biochemically and structurally distinct domain of the retinal interphotoreceptor matrix that is specifically associated with cone photoreceptor cell inner and outer segments. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-15T13:35:32Z cellular_component owl:Class GO:0033165 biolink:NamedThing interphotoreceptor matrix A specialized extracellularc matrix that surrounds the photoreceptors of the retina and lies between them and the apical surface of the retinal pigment epithelium. The IPM has been implicated in several important activities required for photoreceptor function and maintenance. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042698 biolink:NamedThing ovulation cycle The type of sexual cycle seen in females, often with physiologic changes in the endometrium that recur at regular intervals during the reproductive years. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901679 biolink:NamedThing nucleotide transmembrane transport The directed movement of nucleotide across a membrane. tmpzr1t_l9r_go_relaxed.owl nucleotide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. pr 2012-11-22T15:43:23Z biological_process owl:Class GO:2001095 biolink:NamedThing mannotriose transport The directed movement of a mannotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:04:52Z biological_process owl:Class GO:0008493 biolink:NamedThing tetracycline transmembrane transporter activity Enables the transfer of tetracycline from one side of a membrane to the other. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). tmpzr1t_l9r_go_relaxed.owl tetracycline transporter activity|tetracyclin transporter activity molecular_function owl:Class GO:0015904 biolink:NamedThing tetracycline transmembrane transport The directed movement of tetracycline from one side of a membrane to the other. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). tmpzr1t_l9r_go_relaxed.owl tetracyclin transport|tetracycline transport biological_process owl:Class GO:0060419 biolink:NamedThing heart growth The increase in size or mass of the heart. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045629 biolink:NamedThing negative regulation of T-helper 2 cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper 2 cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of T-helper 2 cell differentiation|down-regulation of T-helper 2 cell differentiation|negative regulation of T-helper 2 cell development|downregulation of T-helper 2 cell differentiation|inhibition of T-helper 2 cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0045064 biolink:NamedThing T-helper 2 cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a T-helper 2 (Th2) cell. A Th2 cell is a CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive and produces interleukin-4. tmpzr1t_l9r_go_relaxed.owl T-helper 2 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0005622 biolink:NamedThing intracellular anatomical structure A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm. tmpzr1t_l9r_go_relaxed.owl intracellular|protoplasm|nucleocytoplasm|protoplast|internal to cell https://github.com/geneontology/go-ontology/issues/17776 Wikipedia:Intracellular cellular_component owl:Class GO:0099566 biolink:NamedThing regulation of postsynaptic cytosolic calcium ion concentration Any process that regulates the concentration of calcium in the postsynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic cytosolic calcium levels biological_process owl:Class GO:0015667 biolink:NamedThing site-specific DNA-methyltransferase (cytosine-N4-specific) activity Catalysis of the reaction: S-adenosyl-L-methionine + DNA cytosine = S-adenosyl-L-homocysteine + DNA N4-methylcytosine. tmpzr1t_l9r_go_relaxed.owl DNA[cytosine-N4]methyltransferase activity|S-adenosyl-L-methionine:DNA-cytosine 4-N-methyltransferase activity|N(4)-cytosine-specific DNA methylase activity|modification methylase activity|m4C-forming MTase activity|N4-cytosine-specific DNA methylase activity|restriction-modification system activity|S-adenosyl-L-methionine:DNA-cytosine N4-methyltransferase activity EC:2.1.1.113|RHEA:16857|MetaCyc:2.1.1.113-RXN molecular_function owl:Class GO:0090124 biolink:NamedThing N-4 methylation of cytosine The covalent transfer of a methyl group to N-4 of cytosine in a DNA molecule. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T02:40:38Z biological_process owl:Class GO:0032188 biolink:NamedThing establishment of actomyosin contractile ring localization The process in which a contractile ring is assembled in a specific location as part of a process of cell cycle cytokinesis. tmpzr1t_l9r_go_relaxed.owl actomyosin ring positioning|establishment of contractile ring localization involved in cell cycle cytokinesis|cytokinesis site selection by contractile ring positioning|establishment of contractile ring localisation involved in cell cycle cytokinesis|contractile ring positioning|establishment of contractile ring localization involved in cytokinesis during cell cycle biological_process owl:Class GO:0008585 biolink:NamedThing female gonad development The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl ovary development|ovarian development GO:0061039 biological_process owl:Class GO:0097648 biolink:NamedThing G protein-coupled receptor complex A protein complex that contains G protein-coupled receptors. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor complex pr 2014-09-10T09:14:30Z cellular_component owl:Class GO:0003980 biolink:NamedThing UDP-glucose:glycoprotein glucosyltransferase activity Catalysis of the addition of UDP-glucose on to asparagine-linked (N-linked) oligosaccharides of the form Man7-9GlcNAc2 on incorrectly folded glycoproteins. tmpzr1t_l9r_go_relaxed.owl UGGT activity Reactome:R-HSA-548884 molecular_function owl:Class GO:0097359 biolink:NamedThing UDP-glucosylation The covalent attachment of a UDP-glucose residue to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-06T02:26:35Z biological_process owl:Class GO:0002544 biolink:NamedThing chronic inflammatory response Inflammation of prolonged duration (weeks or months) in which active inflammation, tissue destruction, and attempts at repair are proceeding simultaneously. Although it may follow acute inflammation, chronic inflammation frequently begins insidiously, as a low-grade, smoldering, often asymptomatic response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048289 biolink:NamedThing isotype switching to IgE isotypes The switching of activated B cells from IgM biosynthesis to IgE biosynthesis, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and IgE constant region gene segments in the immunoglobulin heavy chain locus. tmpzr1t_l9r_go_relaxed.owl class switching to IgE isotypes|isotype switch recombination to IgE isotypes|class switch recombination to IgE isotypes biological_process owl:Class GO:0001802 biolink:NamedThing type III hypersensitivity An inflammatory response resulting from recognition of immune complexes via complement or Fc receptors on effector cells leading to activation of neutrophils and other leukocytes and damage to bystander tissue. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Type_III_hypersensitivity Note that the Arthus reaction is an example of type III hypersensitivity. biological_process owl:Class GO:0072087 biolink:NamedThing renal vesicle development The process whose specific outcome is the progression of the renal vesicle over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T01:18:31Z biological_process owl:Class GO:0072009 biolink:NamedThing nephron epithelium development The process whose specific outcome is the progression of the nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The nephron epithelium is a tissue that covers the surface of a nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:01:39Z biological_process owl:Class GO:0006401 biolink:NamedThing RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. tmpzr1t_l9r_go_relaxed.owl RNA degradation|RNA catabolism|RNA breakdown biological_process owl:Class GO:0001814 biolink:NamedThing negative regulation of antibody-dependent cellular cytotoxicity Any process that stops, prevents, or reduces the rate of antibody-dependent cellular cytotoxicity. tmpzr1t_l9r_go_relaxed.owl negative regulation of antibody dependent cell death|negative regulation of antibody dependent cell killing|inhibition of antibody-dependent cellular cytotoxicity|negative regulation of antibody-dependent cell killing|downregulation of antibody-dependent cellular cytotoxicity|down regulation of antibody-dependent cellular cytotoxicity|down-regulation of antibody-dependent cellular cytotoxicity|negative regulation of antibody-dependent cell death biological_process owl:Class GO:0010186 biolink:NamedThing positive regulation of cellular defense response Any process that activates or increases the frequency, rate or extent of cellular defense response. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular defense response|activation of cellular defense response|stimulation of cellular defense response|upregulation of cellular defense response|positive regulation of cellular defence response|up-regulation of cellular defense response biological_process owl:Class GO:0006968 biolink:NamedThing cellular defense response A defense response that is mediated by cells. tmpzr1t_l9r_go_relaxed.owl intracellular defence response|intracellular defense response|cellular defence response https://github.com/geneontology/go-ontology/issues/18111 GO:0016067|GO:0002818|GO:0016066 biological_process owl:Class GO:0015094 biolink:NamedThing lead ion transmembrane transporter activity Enables the transfer of lead (Pb) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity molecular_function owl:Class GO:0015692 biolink:NamedThing lead ion transport The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001941 biolink:NamedThing postsynaptic membrane organization A process which results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). tmpzr1t_l9r_go_relaxed.owl post-synaptic membrane organization|postsynaptic membrane organisation biological_process owl:Class GO:0098973 biolink:NamedThing structural constituent of postsynaptic actin cytoskeleton The action of a molecule that contributes to the structural integrity of a postsynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098871 biolink:NamedThing postsynaptic actin cytoskeleton The actin cytoskeleton that is part of a postsynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016308 biolink:NamedThing 1-phosphatidylinositol-4-phosphate 5-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl PIP kinase activity|1-phosphatidylinositol-4-phosphate kinase, class IA|phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate kinase, class IB|diphosphoinositide kinase activity|phosphatidylinositol 4-phosphate kinase activity|1-phosphatidylinositol-4-phosphate kinase activity|PIP5K|PtdIns(4)P-5-kinase activity|ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase activity|type I PIP kinase activity KEGG_REACTION:R03469|EC:2.7.1.68|Reactome:R-HSA-3772436|RHEA:14425|Reactome:R-HSA-8868066|MetaCyc:2.7.1.68-RXN|Reactome:R-HSA-1676082 GO:0004431|GO:0045215 molecular_function owl:Class GO:1900718 biolink:NamedThing positive regulation of violaceol II biosynthetic process Any process that activates or increases the frequency, rate or extent of violaceol II biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of violaceol II anabolism|upregulation of violaceol II biosynthesis|upregulation of violaceol II synthesis|activation of violaceol II formation|upregulation of violaceol II anabolism|up regulation of violaceol II biosynthetic process|positive regulation of violaceol II formation|up-regulation of violaceol II anabolism|positive regulation of violaceol II anabolism|up-regulation of violaceol II biosynthesis|upregulation of violaceol II formation|up-regulation of violaceol II synthesis|up-regulation of violaceol II biosynthetic process|up regulation of violaceol II synthesis|up-regulation of violaceol II formation|upregulation of violaceol II biosynthetic process|up regulation of violaceol II biosynthesis|activation of violaceol II biosynthesis|positive regulation of violaceol II synthesis|positive regulation of violaceol II biosynthesis|activation of violaceol II biosynthetic process|up regulation of violaceol II formation|up regulation of violaceol II anabolism|activation of violaceol II synthesis di 2012-05-22T05:06:06Z biological_process owl:Class GO:1900593 biolink:NamedThing violaceol II biosynthetic process The chemical reactions and pathways resulting in the formation of violaceol II. tmpzr1t_l9r_go_relaxed.owl violaceol II formation|violaceol II biosynthesis|violaceol II anabolism|violaceol II synthesis di 2012-05-15T06:51:51Z biological_process owl:Class GO:0007229 biolink:NamedThing integrin-mediated signaling pathway A series of molecular signals initiated by the binding of extracellular ligand to an integrin on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl integrin-mediated signalling pathway biological_process owl:Class GO:0072240 biolink:NamedThing metanephric DCT cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the distal convoluted tubule cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl metanephric distal convoluted tubule cell differentiation mah 2010-03-19T03:24:25Z biological_process owl:Class GO:0003281 biolink:NamedThing ventricular septum development The progression of the ventricular septum over time from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl interventricular septum development|septum inferius development dph 2009-10-20T10:04:51Z biological_process owl:Class GO:0003231 biolink:NamedThing cardiac ventricle development The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:03:16Z biological_process owl:Class GO:0000751 biolink:NamedThing mitotic cell cycle G1 arrest in response to pheromone The cell cycle regulatory process in which the mitotic cell cycle is halted during G1 as a result of a pheromone stimulus. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl cell cycle arrest in response to pheromone GO:0030571 biological_process owl:Class GO:0003152 biolink:NamedThing morphogenesis of an epithelial fold involved in embryonic heart tube formation The morphogenetic process in which an epithelial sheet bends along a linear axis, contributing to embryonic heart tube formation. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-23T10:10:24Z biological_process owl:Class GO:0003145 biolink:NamedThing embryonic heart tube formation via epithelial folding The process that gives rise to the embryonic heart tube by the cells of the heart field along a linear axis. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T04:26:03Z biological_process owl:Class GO:0070865 biolink:NamedThing investment cone A cytoskeletal part that consists of a microfilament-rich cone that forms round each nucleus in a spermatogenic cyst and translocates the length of the cyst during sperm individualization. tmpzr1t_l9r_go_relaxed.owl F-actin cone mah 2009-08-19T01:29:33Z cellular_component owl:Class GO:0019915 biolink:NamedThing lipid storage The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. tmpzr1t_l9r_go_relaxed.owl sequestering of lipids|retention of lipids|lipid retention|sequestration of lipid|storage of lipids|lipid sequestration|lipid sequestering|sequestration of lipids biological_process owl:Class GO:0004693 biolink:NamedThing cyclin-dependent protein serine/threonine kinase activity Cyclin-dependent catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl neuronal cdc2-like kinase activity|cyclin-dependent protein kinase, intrinsic catalyst activity|cyclin-dependent kinase-4 activity|cyclin E kinase activity|cyclin D-dependent kinase activity|ATP:cyclin phosphotransferase activity|cyclin-dependent kinase activity|D-type cyclin kinase activity|cdc2 kinase activity|CDK activity|cyclin-dependent protein kinase activity|cyclin D-cdk6 kinase activity|cyclin-dependent kinase-2 activity|CDK, catalytic subunit activity|CDK|cyclin-dependent kinase 6 activity|cyclin-A associated kinase activity|Cdk-activating protein kinase activity|cdk-activating kinase activity Reactome:R-HSA-1226095|Reactome:R-HSA-1226094|Reactome:R-HSA-69005|Reactome:R-HSA-2984220|Reactome:R-HSA-9624800|Reactome:R-HSA-69754|Reactome:R-HSA-2294600|Reactome:R-HSA-2990882|Reactome:R-HSA-187916|Reactome:R-HSA-174079|Reactome:R-HSA-2172183|Reactome:R-HSA-5244669|Reactome:R-HSA-9008412|Reactome:R-HSA-9009282|Reactome:R-HSA-187520|Reactome:R-HSA-187959|MetaCyc:2.7.11.22-RXN|Reactome:R-HSA-5195402|Reactome:R-HSA-4086410|Reactome:R-HSA-6793661|Reactome:R-HSA-174251|Reactome:R-HSA-69227|Reactome:R-HSA-2245218|Reactome:R-HSA-2220971|Reactome:R-HSA-2468287|Reactome:R-HSA-68944|Reactome:R-HSA-6797606|Reactome:R-HSA-2468293|EC:2.7.11.22|Reactome:R-HSA-174132|Reactome:R-HSA-9686521|Reactome:R-HSA-5692755|Reactome:R-HSA-3788705|Reactome:R-HSA-69756|Reactome:R-HSA-188390|Reactome:R-HSA-4088024|Reactome:R-HSA-174122|Reactome:R-HSA-180047|Reactome:R-HSA-1912391|Reactome:R-HSA-2430533|Reactome:R-HSA-2514854|Reactome:R-HSA-6805109|Reactome:R-HSA-380278|Reactome:R-HSA-187948 This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). GO:0016537 molecular_function owl:Class GO:0042555 biolink:NamedThing MCM complex A hexameric protein complex required for the initiation and regulation of DNA replication. tmpzr1t_l9r_go_relaxed.owl mini-chromosome maintenance complex cellular_component owl:Class GO:0044171 biolink:NamedThing host cell smooth endoplasmic reticulum membrane The lipid bilayer surrounding the host cell smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl host smooth endoplasmic reticulum membrane jl 2009-09-04T11:46:00Z cellular_component owl:Class GO:0044170 biolink:NamedThing host cell smooth endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host smooth ER has no ribosomes adhering to the outer surface. tmpzr1t_l9r_go_relaxed.owl host smooth endoplasmic reticulum jl 2009-09-04T11:33:29Z cellular_component owl:Class GO:0098794 biolink:NamedThing postsynapse The part of a synapse that is part of the post-synaptic cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090252 biolink:NamedThing epithelium migration involved in imaginal disc-derived wing morphogenesis The process in which the population of cells that make up a wing epithelium undergo directed movement and contribute to imaginal disc-derived morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:40:46Z biological_process owl:Class GO:1904034 biolink:NamedThing positive regulation of t-SNARE clustering Any process that activates or increases the frequency, rate or extent of t-SNARE clustering. tmpzr1t_l9r_go_relaxed.owl up-regulation of t-SNARE clustering|upregulation of t-SNARE clustering|up regulation of t-SNARE clustering|activation of t-SNARE clustering sl 2015-03-13T21:21:50Z biological_process owl:Class GO:1990656 biolink:NamedThing t-SNARE clustering The clustering process in which t-SNARES are localized to distinct domains in the cell membrane. t-SNAREs are cell surface proteins which are part of secretory microdomain assemblies. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-25T00:18:33Z biological_process owl:Class GO:0032019 biolink:NamedThing mitochondrial cloud A prominent mass in the cytoplasm of previtellogenic oocytes. The cloud contains both mitochondria and electron-dense granulofibrillar material (GFM) and is the source of germinal granule material. tmpzr1t_l9r_go_relaxed.owl mitochondrial aggregate|Balbiani body cellular_component owl:Class GO:1904554 biolink:NamedThing positive regulation of chemotaxis to arachidonic acid Any process that activates or increases the frequency, rate or extent of chemotaxis to arachidonic acid. tmpzr1t_l9r_go_relaxed.owl up-regulation of chemotaxis to arachidonic acid|activation of chemotaxis to arachidonic acid|up regulation of chemotaxis to arachidonic acid|upregulation of chemotaxis to arachidonic acid sl 2015-08-13T21:08:27Z biological_process owl:Class GO:0034670 biolink:NamedThing chemotaxis to arachidonic acid The directed movement of a motile cell or organism in response to the presence of arachidonic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003023 biolink:NamedThing baroreceptor detection of increased arterial stretch The series of events by which an increase in diameter of an artery is detected and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001983 biolink:NamedThing baroreceptor response to increased systemic arterial blood pressure The increase in nerve impulses from baroreceptors as a result of increased pressure on an artery that results in an inhibition of sympathetic nerve impulses to peripheral blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035808 biolink:NamedThing meiotic recombination initiation complex A protein complex that initiates the formation of double-strand breaks (DSBs) required for meiotic recombination. Consists of a protein that catalyses formation of the double-strand breaks (Spo11 in S. cerevisiae and Rec12 in S. pombe), and a number of accessory proteins. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T11:52:50Z cellular_component owl:Class GO:0000794 biolink:NamedThing condensed nuclear chromosome A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome. tmpzr1t_l9r_go_relaxed.owl meiotic chromosome|nuclear mitotic chromosome Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome. cellular_component owl:Class GO:0034085 biolink:NamedThing establishment of sister chromatid cohesion The process in which the sister chromatids of a replicated chromosome become associated with each other during S phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043294 biolink:NamedThing mitochondrial glutamate synthase complex (NADH) A protein complex, found in the mitochondria, that in yeast consists of a large and a small subunit. Possesses glutamate synthase (NADH) activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061147 biolink:NamedThing endocardial endothelium development The progression of the endocardial endothelium over time, from its initial formation to the mature structure. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-03T09:15:31Z biological_process owl:Class GO:0003157 biolink:NamedThing endocardium development The process whose specific outcome is the progression of the endocardium over time, from its formation to the mature structure. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-01T12:42:27Z biological_process owl:Class GO:0045635 biolink:NamedThing negative regulation of melanocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of melanocyte differentiation|down regulation of melanocyte differentiation|down-regulation of melanocyte differentiation|negative regulation of melanophore differentiation|inhibition of melanocyte differentiation biological_process owl:Class GO:0030318 biolink:NamedThing melanocyte differentiation The process in which a relatively unspecialized cell acquires specialized features of a melanocyte. tmpzr1t_l9r_go_relaxed.owl melanocyte cell differentiation|melanophore differentiation biological_process owl:Class GO:0021685 biolink:NamedThing cerebellar granular layer structural organization The process that contributes to the act of creating the structural organization of the cerebellar granule layer. This process pertains to the physical shaping of a rudimentary structure. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. tmpzr1t_l9r_go_relaxed.owl cerebellar granular layer structural organisation biological_process owl:Class GO:0021698 biolink:NamedThing cerebellar cortex structural organization The process that contributes to the act of creating the structural organization of the cerebellar cortex. This process pertains to the physical shaping of a rudimentary structure. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function. tmpzr1t_l9r_go_relaxed.owl cerebellar cortex structural organisation biological_process owl:Class GO:0044199 biolink:NamedThing host cell nuclear envelope The double lipid bilayer enclosing the host nucleus and separating its contents from the rest of the host cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T10:56:11Z cellular_component owl:Class GO:0033645 biolink:NamedThing host cell endomembrane system A collection of membranous structures involved in transport within the host cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015806 biolink:NamedThing S-methylmethionine transport The directed movement of S-methylmethionine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043057 biolink:NamedThing backward locomotion Posterior movement of an organism, e.g. following the direction of the tail of an animal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090271 biolink:NamedThing positive regulation of fibroblast growth factor production Any process that increases the rate, frequency or extent of the appearance of a fibroblast growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:33:33Z biological_process owl:Class GO:0090269 biolink:NamedThing fibroblast growth factor production The appearance of a fibroblast growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:33:33Z biological_process owl:Class GO:0060073 biolink:NamedThing micturition The regulation of body fluids process in which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body. tmpzr1t_l9r_go_relaxed.owl urine voiding|urination Wikipedia:Urination biological_process owl:Class GO:0075272 biolink:NamedThing regulation of zygosporangium development Any process that modulates the frequency, rate or extent of zygosporangium development, a process in which a fruiting body called zygosporangium is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075271 biolink:NamedThing zygosporangium development The process in which a fruiting body called zygosporangium is formed. A zygosporangium is a thick-walled structure in which spores are produced, and is characteristic of the Zygomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072540 biolink:NamedThing T-helper 17 cell lineage commitment The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 17 cell, a CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive that produces IL-17. tmpzr1t_l9r_go_relaxed.owl Th17 fate commitment|T-helper 17 cell fate commitment|Th17 cell lineage commitment mah 2011-01-17T11:19:48Z biological_process owl:Class GO:0043567 biolink:NamedThing regulation of insulin-like growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of insulin-like growth factor receptor signaling. tmpzr1t_l9r_go_relaxed.owl regulation of insulin-like growth factor receptor signalling pathway|regulation of IGF receptor signaling pathway|regulation of IGF receptor signalling pathway biological_process owl:Class GO:0048009 biolink:NamedThing insulin-like growth factor receptor signaling pathway The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl IGF receptor signalling pathway|IGF receptor signaling pathway biological_process owl:Class GO:0048357 biolink:NamedThing pedicel mucilage biosynthetic process The chemical reactions and pathways resulting in the formation of mucilage that occur in the flower stem. tmpzr1t_l9r_go_relaxed.owl pedicel mucilage anabolism|pedicel mucilage formation|pedicel mucilage biosynthesis|pedicel mucilage synthesis biological_process owl:Class GO:0048362 biolink:NamedThing pedicel mucilage metabolic process The chemical reactions and pathways involving mucilage that occur in the flower stem. tmpzr1t_l9r_go_relaxed.owl pedicel mucilage metabolism biological_process owl:Class GO:0097568 biolink:NamedThing median body A non-membrane bound, semi-organized microtubule array of unknown function found in Giardia species (trophozoite stage). It is located on the dorsal side of the trophozoite, slightly posterior to the ventral disc. tmpzr1t_l9r_go_relaxed.owl parabasal body Note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-11T13:34:19Z cellular_component owl:Class GO:0060135 biolink:NamedThing maternal process involved in female pregnancy A reproductive process occurring in the mother that allows an embryo or fetus to develop within it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042958 biolink:NamedThing maltodextrin transmembrane transporter activity Enables the transfer of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042956 biolink:NamedThing maltodextrin transport The directed movement of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005789 biolink:NamedThing endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl ER membrane cellular_component owl:Class GO:0000327 biolink:NamedThing lytic vacuole within protein storage vacuole A membrane-bounded compartment containing crystals of phytic acid and proteins characteristic of a lytic vacuole, found within a storage vacuole. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000326 biolink:NamedThing protein storage vacuole A storage vacuole that contains a lytic vacuole; identified in plants. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070946 biolink:NamedThing neutrophil-mediated killing of gram-positive bacterium The directed killing of a gram-positive bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated killing of gram-positive bacterium mah 2009-10-01T02:04:15Z biological_process owl:Class GO:0050830 biolink:NamedThing defense response to Gram-positive bacterium Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl defence response to Gram-positive bacterium|defence response to Gram-positive bacteria|Gram-positive antibacterial peptide activity|defense response to Gram-positive bacteria biological_process owl:Class GO:0008286 biolink:NamedThing insulin receptor signaling pathway The series of molecular signals generated as a consequence of the insulin receptor binding to insulin. tmpzr1t_l9r_go_relaxed.owl insulin receptor signalling pathway|daf-2 receptor signaling pathway biological_process owl:Class GO:0046663 biolink:NamedThing dorsal closure, leading edge cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a leading edge cell, the dorsal-most cells of the epidermis that migrates during dorsal closure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007391 biolink:NamedThing dorsal closure The process during Drosophila embryogenesis whereby the ectodermal cells of the lateral epithelium stretch in a coordinated fashion to internalize the amnioserosa cells and close the embryo dorsally. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098785 biolink:NamedThing biofilm matrix assembly A process that results in the assembly of a biofilm matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042710 biolink:NamedThing biofilm formation A process in which planktonically growing microorganisms grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17727 biological_process owl:Class GO:0032624 biolink:NamedThing interleukin-20 production The appearance of interleukin-20 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl ZCYTO10 production|IL-20 production|interleukin-20 biosynthetic process|interleukin-20 secretion GO:0042237|GO:0072618 biological_process owl:Class GO:0006413 biolink:NamedThing translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. tmpzr1t_l9r_go_relaxed.owl biopolymerization|translation initiation|protein synthesis initiation|biopolymerisation GO:0006440|GO:0006454 biological_process owl:Class GO:1990500 biolink:NamedThing eif4e-cup complex A protein complex that causes translational repression in Drosophila. Prevents assembly of ribosomes at the mRNA by interfacing with a sequence-specific RNA-binding protein leading to recruitment of the CCR4 complex and consequently, reduction of the mRNA's poly(A) tail length. The complex is also required for dorso-ventral pattern formation in the embryo. tmpzr1t_l9r_go_relaxed.owl eukaryotic translation initiation factor 4E-cup complex An example of this is Eif4e in drome (P48598) in PMID:14723848 (inferred from physical interaction). bhm 2014-09-30T12:31:49Z cellular_component owl:Class GO:0000932 biolink:NamedThing P-body A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. tmpzr1t_l9r_go_relaxed.owl cytoplasmic mRNA processing body|P body|cytoplasmic foci Wikipedia:P_body cellular_component owl:Class GO:0032332 biolink:NamedThing positive regulation of chondrocyte differentiation Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of chondrocyte differentiation|activation of chondrocyte differentiation|stimulation of chondrocyte differentiation|up-regulation of chondrocyte differentiation|upregulation of chondrocyte differentiation biological_process owl:Class GO:0002062 biolink:NamedThing chondrocyte differentiation The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003421 biolink:NamedThing growth plate cartilage axis specification The establishment, maintenance and elaboration of the columnar cartilage along the axis of a long bone that contributes to bone growth. tmpzr1t_l9r_go_relaxed.owl growth plate cartilage axis determination dph 2009-12-22T09:16:33Z biological_process owl:Class GO:0003422 biolink:NamedThing growth plate cartilage morphogenesis The process in which the anatomical structures of growth plate cartilage are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T09:21:30Z biological_process owl:Class GO:0043678 biolink:NamedThing intine The innermost of the major layers of the pollen grain wall which underlies the exine and borders the cytoplasm. tmpzr1t_l9r_go_relaxed.owl Note that the intine is not acetolysis resistant and is therefore absent in conventionally prepared palynological material. cellular_component owl:Class GO:0043667 biolink:NamedThing pollen wall The wall surrounding a mature pollen grain; a multilayered structure consisting of a pectocellulosic intine surrounded by a sporopollenin-based exine, which itself contains two layers, the inner nexine and the outer sexine. tmpzr1t_l9r_go_relaxed.owl microspore wall cellular_component owl:Class GO:0060316 biolink:NamedThing positive regulation of ryanodine-sensitive calcium-release channel activity Any process that increases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005219 biolink:NamedThing ryanodine-sensitive calcium-release channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ryanodine receptor|caffeine-sensitive calcium-release channel Reactome:R-HSA-2855020 molecular_function owl:Class GO:0030991 biolink:NamedThing intraciliary transport particle A The smaller subcomplex of the intraciliary transport particle; characterized complexes have molecular weights of 710-760 kDa. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport complex A|IFT complex A|IFT A complex|intraflagellar transport particle A Note that we deem cilia and microtubule-based flagella to be equivalent. cellular_component owl:Class GO:0030990 biolink:NamedThing intraciliary transport particle A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport particle|intraflagellar transport complex|IFT complex Note that we deem cilia and microtubule-based flagella to be equivalent. cellular_component owl:Class GO:0005634 biolink:NamedThing nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. tmpzr1t_l9r_go_relaxed.owl horsetail nucleus|cell nucleus Wikipedia:Cell_nucleus|NIF_Subcellular:sao1702920020 cellular_component owl:Class GO:0003129 biolink:NamedThing heart induction The close range interaction between mesoderm and endoderm or ectoderm that causes cells to change their fates and specify the development of the heart. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T02:58:41Z biological_process owl:Class GO:0071770 biolink:NamedThing DIM/DIP cell wall layer assembly The aggregation, arrangement and bonding together of a set of components, including (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate and diphthioceranate, to form the DIM/DIP layer of the Actinobacterium-type cell wall. tmpzr1t_l9r_go_relaxed.owl DIM/DIP cell wall layer biogenesis|DIM cell wall layer assembly|PDIM cell wall layer assembly mah 2010-03-29T04:47:19Z biological_process owl:Class GO:0071766 biolink:NamedThing Actinobacterium-type cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall of the type found in Actinobacteria. The cell wall is the rigid or semi-rigid envelope lying outside the cell membrane. Actinobacterial cell walls contain characteristic mycolic acids, of which some are covalently linked to the cell wall peptidoglycan and others accumulate at the cell surface. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-29T04:12:51Z biological_process owl:Class GO:0090592 biolink:NamedThing DNA synthesis involved in DNA replication Synthesis of DNA that is a part of the process of duplicating one or more molecules of DNA. tmpzr1t_l9r_go_relaxed.owl tb 2014-06-06T13:54:36Z biological_process owl:Class GO:0006260 biolink:NamedThing DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. tmpzr1t_l9r_go_relaxed.owl Wikipedia:DNA_replication DNA biosynthesis is only part of this process. See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'. GO:0055133 biological_process owl:Class GO:0099703 biolink:NamedThing induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration The induction of synaptic vesicle release by any process that leads to a rise in intracellular calcium ion concentration at the presynapse. This is the first step in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086060 biolink:NamedThing voltage-gated sodium channel activity involved in AV node cell action potential Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of an AV node cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated sodium channel activity involved in AV node cardiac muscle cell action potential|voltage-gated sodium channel activity involved in atrioventricular node cardiac muscle cell action potential dph 2011-11-17T12:52:48Z molecular_function owl:Class GO:0086045 biolink:NamedThing membrane depolarization during AV node cell action potential The process in which AV node cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl membrane depolarization during atrioventricular node cardiac muscle cell action potential|membrane depolarization during AV node cardiac muscle cell action potential dph 2011-11-16T10:45:18Z biological_process owl:Class GO:0048690 biolink:NamedThing regulation of axon extension involved in regeneration Any process that modulates the frequency, rate or extent of axon extension involved in regeneration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990633 biolink:NamedThing mutator focus A type of punctate focus localized to the perinuclear region of germline cytoplasm in C. elegans. Mutator foci are required for RNA interference (RNAi) and serve as sites of small inhibitory RNA (siRNA) amplification. As such, proteins that localize to mutator foci include RNA-directed RNA polymerases (RdRPs) and beta-nucleotidyltransferases. Mutator foci are distinct from, but adjacent to or partially overlap, P granules. tmpzr1t_l9r_go_relaxed.owl kmv 2015-02-10T20:24:02Z cellular_component owl:Class GO:0048471 biolink:NamedThing perinuclear region of cytoplasm Cytoplasm situated near, or occurring around, the nucleus. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be confused with the cellular component term 'nuclear membrane lumen ; GO:0005641', which has the synonym 'perinuclear space'. cellular_component owl:Class GO:0072597 biolink:NamedThing maintenance of protein location in chloroplast Any process in which a protein is maintained in a specific location in a chloroplast, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:17:48Z biological_process owl:Class GO:0060108 biolink:NamedThing annular furrow extracellular matrix The extracellular matrix part that is a regularly spaced indentation in the outer cortical layer of the cuticle. The pattern of annular furrows corresponds to sites of invaginations in hypodermal cell membranes that, in turn, correspond to submembranous regions where actin microfilament bundles assemble early in lethargus, the first phase of the molting cycle in which activity and feeding decline. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060106 biolink:NamedThing cortical layer of collagen and cuticulin-based cuticle extracellular matrix The cuticle layer that lies directly beneath the lipid-containing epicuticle. The cortical layer contains collagens and insoluble, non-collagenous cuticulins and is characterized by a distinct annular pattern consisting of regularly spaced annular ridges delineated by annular furrows. An example of this component is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033078 biolink:NamedThing extrathymic T cell differentiation The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway independent of the thymus. tmpzr1t_l9r_go_relaxed.owl extrathymic T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0021639 biolink:NamedThing trochlear nerve morphogenesis The process in which the anatomical structure of the trochlear nerve is generated and organized. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle. tmpzr1t_l9r_go_relaxed.owl CH IV morphogenesis biological_process owl:Class GO:1902297 biolink:NamedThing cell cycle DNA replication DNA unwinding Any DNA unwinding that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA unwinding factor involved in cell cycle DNA replication|DNA unwinding during replication involved in cell cycle DNA replication|DNA unwinding involved in cell cycle DNA replication jl 2013-07-10T11:47:10Z biological_process owl:Class GO:0045636 biolink:NamedThing positive regulation of melanocyte differentiation Any process that activates or increases the frequency, rate or extent of melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of melanocyte differentiation|upregulation of melanocyte differentiation|up regulation of melanocyte differentiation|activation of melanocyte differentiation|positive regulation of melanophore differentiation|up-regulation of melanocyte differentiation biological_process owl:Class GO:0090171 biolink:NamedThing chondrocyte morphogenesis The process in which the structures of a chondrocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a chondrocyte. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-11T10:36:02Z biological_process owl:Class GO:0002063 biolink:NamedThing chondrocyte development The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006963 biolink:NamedThing positive regulation of antibacterial peptide biosynthetic process Any process that activates or increases the frequency, rate, or extent of antibacterial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl activation of antibacterial peptide biosynthetic process|upregulation of antibacterial peptide biosynthetic process|up regulation of antibacterial peptide biosynthetic process|antibacterial polypeptide induction|up-regulation of antibacterial peptide biosynthetic process|antibacterial peptide induction|stimulation of antibacterial peptide biosynthetic process biological_process owl:Class GO:0045123 biolink:NamedThing cellular extravasation The migration of a leukocyte from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl immune cell cellular extravasation|leucocyte cellular extravasation|transendothelial leukocyte migration|leukocyte cellular extravasation Wikipedia:Leukocyte_extravasation biological_process owl:Class GO:0060662 biolink:NamedThing salivary gland cavitation The process in which the solid core of salivary epithelium gives rise to the hollow tube of the gland. tmpzr1t_l9r_go_relaxed.owl salivary gland invagination dph 2009-06-01T08:22:55Z biological_process owl:Class GO:0007435 biolink:NamedThing salivary gland morphogenesis The process in which the anatomical structures of the salivary gland are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071660 biolink:NamedThing positive regulation of IP-10 production Any process that activates or increases the frequency, rate, or extent of production of IP-10. tmpzr1t_l9r_go_relaxed.owl positive regulation of CXCL10 production|positive regulation of chemokine (C-C motif) ligand 10 production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0071612 biolink:NamedThing IP-10 production The appearance of IP-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl chemokine (C-C motif) ligand 10 production|CXCL10 production mah 2010-02-05T04:43:56Z biological_process owl:Class GO:0044090 biolink:NamedThing positive regulation of vacuole organization Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole. tmpzr1t_l9r_go_relaxed.owl positive regulation of vacuole biogenesis|positive regulation of vacuole organisation biological_process owl:Class GO:0098793 biolink:NamedThing presynapse The part of a synapse that is part of the presynaptic cell. tmpzr1t_l9r_go_relaxed.owl presynaptic terminal cellular_component owl:Class GO:2000503 biolink:NamedThing positive regulation of natural killer cell chemotaxis Any process that activates or increases the frequency, rate or extent of natural killer cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-21T10:09:38Z biological_process owl:Class GO:0035747 biolink:NamedThing natural killer cell chemotaxis The directed movement of a natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T02:40:10Z biological_process owl:Class GO:0002040 biolink:NamedThing sprouting angiogenesis The extension of new blood vessels from existing vessels into avascular tissues, this process includes the specialization of endothelial cells into leading tip and stalk cells, proliferation and migration of the endothelial cells and cell adhesion resulting in angiogenic sprout fusion or lumen formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061556 biolink:NamedThing trigeminal ganglion morphogenesis The process in which the anatomical structure of a trigeminal ganglion is generated and organized. tmpzr1t_l9r_go_relaxed.owl trigeminal ganglia morphogenesis dph 2013-07-10T08:57:12Z biological_process owl:Class GO:0061551 biolink:NamedThing trigeminal ganglion development The process whose specific outcome is the progression of a trigeminal ganglion over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl trigeminal ganglia development dph 2013-07-10T08:42:19Z biological_process owl:Class GO:2000502 biolink:NamedThing negative regulation of natural killer cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of natural killer cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-21T10:09:32Z biological_process owl:Class GO:0021699 biolink:NamedThing cerebellar cortex maturation A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar cortex to attain its fully functional state. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901228 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in heart development Any positive regulation of transcription from RNA polymerase II promoter that is involved in heart development. tmpzr1t_l9r_go_relaxed.owl positive regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|upregulation of transcription from RNA polymerase II promoter involved in cardiac development|up-regulation of transcription from RNA polymerase II promoter involved in heart development|stimulation of global transcription from RNA polymerase II promoter involved in heart development|stimulation of transcription from RNA polymerase II promoter involved in cardiac development|activation of transcription from RNA polymerase II promoter involved in dorsal vessel development|up regulation of transcription from RNA polymerase II promoter involved in cardiac development|upregulation of transcription from RNA polymerase II promoter involved in heart development|up regulation of global transcription from RNA polymerase II promoter involved in cardiac development|activation of global transcription from RNA polymerase II promoter involved in heart development|up regulation of global transcription from RNA polymerase II promoter involved in heart development|positive regulation of global transcription from Pol II promoter involved in dorsal vessel development|positive regulation of transcription from Pol II promoter involved in cardiac development|up regulation of transcription from RNA polymerase II promoter involved in heart development|up regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of transcription from RNA polymerase II promoter involved in cardiac development|stimulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|up-regulation of global transcription from RNA polymerase II promoter involved in heart development|stimulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of transcription from Pol II promoter involved in heart development|up-regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|activation of transcription from RNA polymerase II promoter involved in cardiac development|upregulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|up regulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|upregulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|upregulation of global transcription from RNA polymerase II promoter involved in cardiac development|upregulation of global transcription from RNA polymerase II promoter involved in heart development|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|positive regulation of global transcription from Pol II promoter involved in cardiac development|stimulation of global transcription from RNA polymerase II promoter involved in cardiac development|positive regulation of transcription from Pol II promoter involved in dorsal vessel development|activation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|activation of global transcription from RNA polymerase II promoter involved in cardiac development|up-regulation of transcription from RNA polymerase II promoter involved in cardiac development|up-regulation of global transcription from RNA polymerase II promoter involved in cardiac development|up-regulation of global transcription from RNA polymerase II promoter involved in dorsal vessel development|stimulation of transcription from RNA polymerase II promoter involved in heart development|activation of transcription from RNA polymerase II promoter involved in heart development|positive regulation of global transcription from Pol II promoter involved in heart development pr 2012-08-07T12:53:01Z biological_process owl:Class GO:1905364 biolink:NamedThing regulation of endosomal vesicle fusion Any process that modulates the frequency, rate or extent of endosomal vesicle fusion. tmpzr1t_l9r_go_relaxed.owl regulation of endosome vesicle fusion bc 2016-08-16T11:40:36Z biological_process owl:Class GO:0034058 biolink:NamedThing endosomal vesicle fusion The homotypic fusion of endocytic vesicles to form or add to an early endosome. tmpzr1t_l9r_go_relaxed.owl endosome vesicle fusion biological_process owl:Class GO:1903057 biolink:NamedThing negative regulation of melanosome organization Any process that stops, prevents or reduces the frequency, rate or extent of melanosome organization. tmpzr1t_l9r_go_relaxed.owl down regulation of melanosome organisation|down regulation of melanosome organization and biogenesis|inhibition of melanosome organization|downregulation of melanosome organisation|down regulation of melanosome organization|downregulation of melanosome organization|negative regulation of melanosome organization and biogenesis|negative regulation of melanosome organisation|down-regulation of melanosome organization and biogenesis|down-regulation of melanosome organisation|inhibition of melanosome organisation|downregulation of melanosome organization and biogenesis|inhibition of melanosome organization and biogenesis|down-regulation of melanosome organization Lack of the transcription factor Zeb2 Q9R0G7 leads to spherical melanosomes with irregular borders, in contrast to the rod-shaped melanosomes of ZEB2MCWT hair follicles. rl 2014-05-27T13:27:55Z biological_process owl:Class GO:0032438 biolink:NamedThing melanosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. tmpzr1t_l9r_go_relaxed.owl melanosome organization and biogenesis|melanosome organisation biological_process owl:Class GO:1900220 biolink:NamedThing semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis Any semaphorin-plexin signaling pathway that contributes to bone trabecula morphogenesis. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signaling pathway of bone trabecula morphogenesis|semaphorin-plexin signalling pathway of bone trabecula morphogenesis vk 2012-03-22T01:13:56Z biological_process owl:Class GO:0005930 biolink:NamedThing axoneme The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements. tmpzr1t_l9r_go_relaxed.owl cilium axoneme|flagellar axoneme|flagellum axoneme|ciliary axoneme Wikipedia:Axoneme Note that cilia and eukaryotic flagella are deemed to be equivalent. In diplomonad species, such as Giardia, the axoneme may extend intracellularly up to 5um away from the plane of the plasma membrane. GO:0035086|GO:0035085 cellular_component owl:Class GO:0061719 biolink:NamedThing glucose catabolic process to pyruvate utilizing ADP The chemical reactions and pathways resulting in the breakdown of glucose into pyruvate, with the concomitant production of a small amount of ATP and the utilization of ADP in the initial kinase reactions. tmpzr1t_l9r_go_relaxed.owl MetaCyc:P341-PWY dph 2015-06-30T13:23:42Z biological_process owl:Class GO:0004332 biolink:NamedThing fructose-bisphosphate aldolase activity Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)|SMALDO|fructose 1,6-diphosphate aldolase activity|phosphofructoaldolase activity|fructose-1,6-bisphosphate triosephosphate-lyase activity|aldolase activity|zymohexase activity|fructose 1-monophosphate aldolase activity|1,6-diphosphofructose aldolase activity|D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase activity|fructoaldolase activity|diphosphofructose aldolase activity|fructose diphosphate aldolase activity|fructose 1-phosphate aldolase activity|ketose 1-phosphate aldolase activity RHEA:14729|Reactome:R-HSA-71495|Reactome:R-HSA-71496|MetaCyc:F16ALDOLASE-RXN|EC:4.1.2.13 molecular_function owl:Class GO:0002324 biolink:NamedThing natural killer cell proliferation involved in immune response The expansion of a natural killer cell population by cell division as part of an immune response. tmpzr1t_l9r_go_relaxed.owl NK cell proliferation during immune response|natural killer cell proliferation during immune response biological_process owl:Class GO:0042950 biolink:NamedThing salicin transmembrane transporter activity Enables the transfer of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042948 biolink:NamedThing salicin transport The directed movement of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052885 biolink:NamedThing all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity Catalysis of the reaction: H(2)O + all-trans-retinyl ester = 11-cis-retinol + fatty acid. tmpzr1t_l9r_go_relaxed.owl retinol isomerase activity|retinoid isomerohydrolase activity|all-trans-retinol isomerase:hydrolase activity|all-trans-retinyl ester acylhydrolase, 11-cis retinol forming activity|all-trans-retinylester 11-cis isomerohydrolase activity EC:3.1.1.64|RHEA:31771|KEGG_REACTION:R08388|MetaCyc:RXN-12550 molecular_function owl:Class GO:0042572 biolink:NamedThing retinol metabolic process The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl retinol metabolism|vitamin A1 alcohol metabolism|vitamin A1 alcohol metabolic process|vitamin A1 metabolism|vitamin A1 metabolic process Wikipedia:Retinol biological_process owl:Class GO:0061293 biolink:NamedThing canonical Wnt signaling pathway involved in mesonephric nephron development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contribute to the progression of the mesonephric nephron over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in mesonephric nephron development|canonical Wnt-activated signaling pathway involved in mesonephric nephron development|canonical Wnt receptor signaling pathway involved in mesonephric nephron development dph 2010-09-03T12:49:43Z biological_process owl:Class GO:0061215 biolink:NamedThing mesonephric nephron development The process whose specific outcome is the progression of a nephron in the mesonephros over time, from its formation to the mature structure. A nephron is the functional unit of the kidney. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:31:08Z biological_process owl:Class GO:0035314 biolink:NamedThing scab formation Formation of hardened covering (a scab) at a wound site. The scab has multiple functions including limiting blood loss, providing structural stability to the wound and guarding against infection. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003063 biolink:NamedThing negative regulation of heart rate by acetylcholine The process in which acetylcholine released from vagus nerve endings binds to muscarinic receptors on the pacemaker cells and decreases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl negative regulation of heart contraction rate by acetylcholine biological_process owl:Class GO:0003068 biolink:NamedThing regulation of systemic arterial blood pressure by acetylcholine The regulation of blood pressure mediated by acetylcholine signaling. Acetylcholine is an acetic acid ester of the organic base choline and functions as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by acetylcholine biological_process owl:Class GO:0010075 biolink:NamedThing regulation of meristem growth Any process involved in maintaining the size and shape of a meristem. tmpzr1t_l9r_go_relaxed.owl regulation of meristem size biological_process owl:Class GO:0010073 biolink:NamedThing meristem maintenance Any process involved in maintaining the identity, size and shape of a meristem. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051563 biolink:NamedThing smooth endoplasmic reticulum calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions within the smooth endoplasmic reticulum of a cell or between the smooth endoplasmic reticulum and its surroundings. tmpzr1t_l9r_go_relaxed.owl calcium ion homeostasis in smooth ER|regulation of smooth ER calcium ion concentration|regulation of calcium ion concentration in smooth ER|smooth endoplasmic reticulum calcium ion concentration regulation|smooth ER calcium ion concentration regulation|regulation of smooth endoplasmic reticulum calcium ion concentration|regulation of calcium ion concentration in smooth endoplasmic reticulum|smooth ER calcium ion homeostasis|calcium ion homeostasis in smooth endoplasmic reticulum biological_process owl:Class GO:0005790 biolink:NamedThing smooth endoplasmic reticulum The smooth endoplasmic reticulum (smooth ER or SER) has no ribosomes attached to it. The smooth ER is the recipient of the proteins synthesized in the rough ER. Those proteins to be exported are passed to the Golgi complex, the resident proteins are returned to the rough ER and the lysosomal proteins after phosphorylation of their mannose residues are passed to the lysosomes. Glycosylation of the glycoproteins also continues. The smooth ER is the site of synthesis of lipids, including the phospholipids. The membranes of the smooth ER also contain enzymes that catalyze a series of reactions to detoxify both lipid-soluble drugs and harmful products of metabolism. Large quantities of certain compounds such as phenobarbital cause an increase in the amount of the smooth ER. tmpzr1t_l9r_go_relaxed.owl smooth ER|SER Wikipedia:Endoplasmic_reticulum#Smooth_endoplasmic_reticulum|NIF_Subcellular:sao710427438 cellular_component owl:Class GO:0061916 biolink:NamedThing leading edge of axonal growth cone That part of the axonal growth cone which represents the distal part of the structure. tmpzr1t_l9r_go_relaxed.owl distal tip of axonal growth cone|axonal growth cone leading edge dph 2017-07-10T19:17:21Z cellular_component owl:Class GO:0090725 biolink:NamedThing peripheral region of growth cone The non-central region or periphery of the migrating motile tip of a growing nerve cell axon or dendrite. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-18T12:44:25Z cellular_component owl:Class GO:0005818 biolink:NamedThing aster An array of microtubules emanating from a spindle pole MTOC that do not connect to kinetochores. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005819 biolink:NamedThing spindle The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Spindle_apparatus cellular_component owl:Class GO:0036497 biolink:NamedThing eIF2alpha dephosphorylation in response to endoplasmic reticulum stress The removal of a phosphate group from the translation initiation factor eIF2alpha, as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl regulation of translation initiation by eIF2alpha dephosphorylation in response to endoplasmic reticulum stress|eIF2alpha dephosphorylation in response to ER stress bf 2015-02-05T10:24:18Z biological_process owl:Class GO:0021587 biolink:NamedThing cerebellum morphogenesis The process in which the anatomical structure of the cerebellum is generated and organized. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021549 biolink:NamedThing cerebellum development The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021922 biolink:NamedThing Wnt signaling pathway involved in regulation of cell proliferation in dorsal spinal cord The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of a cell in the dorsal spinal cord that affects the rate of its division. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signaling pathway involved in regulation of cell proliferation in dorsal spinal cord|Wnt-activated signaling pathway involved in regulation of cell proliferation in dorsal spinal cord|Wnt receptor signalling pathway involved in regulation of cell proliferation in dorsal spinal cord biological_process owl:Class GO:0021921 biolink:NamedThing regulation of cell proliferation in dorsal spinal cord The process that modulates the frequency, rate or extent of cell proliferation in the dorsal spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033674 biolink:NamedThing positive regulation of kinase activity Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl up-regulation of kinase activity|up regulation of kinase activity|kinase activator|upregulation of kinase activity|stimulation of kinase activity biological_process owl:Class GO:0098779 biolink:NamedThing positive regulation of mitophagy in response to mitochondrial depolarization Any process that activates or increases the frequency, rate or extent of mitophagy in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl positive regulation of macromitophagy in response to mitochondrial depolarization biological_process owl:Class GO:0000423 biolink:NamedThing mitophagy The selective autophagy process in which a mitochondrion is degraded by macroautophagy. tmpzr1t_l9r_go_relaxed.owl macromitophagy Note that this terms refers to the macroautophagy process and is named by common usage. Be aware that there are a separate micromitophagy and mitophagy by induced vacuole formation processes. biological_process owl:Class GO:0001828 biolink:NamedThing inner cell mass cellular morphogenesis The morphogenesis of cells in the inner cell mass. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14' and 'TS5, inner cell mass ; EMAP:24'. biological_process owl:Class GO:0001826 biolink:NamedThing inner cell mass cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an inner cell mass cell. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14'. biological_process owl:Class GO:0009034 biolink:NamedThing tryptophanase activity Catalysis of the reaction: L-tryptophan + H(2)O = indole + NH(4)(+) + pyruvate. tmpzr1t_l9r_go_relaxed.owl L-tryptophan indole-lyase activity|tryptophan catabolism, using tryptophanase|L-tryptophan indole-lyase (deaminating) activity|L-tryptophan indole-lyase (deaminating; pyruvate forming) activity|TNase activity|tryptophan catabolic process, using tryptophanase|L-tryptophanase activity MetaCyc:TRYPDEG-PWY|KEGG_REACTION:R00673|MetaCyc:TRYPTOPHAN-RXN|RHEA:19553|EC:4.1.99.1|UniPathway:UPA00332 Note that this term has a MetaCyc pathway reference as the pathway only has a single step. molecular_function owl:Class GO:0006569 biolink:NamedThing tryptophan catabolic process The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl tryptophan catabolic process, using tryptophanase|tryptophan degradation|tryptophan catabolism|tryptophan catabolism, using tryptophanase|tryptophan breakdown biological_process owl:Class GO:0034257 biolink:NamedThing nicotinamide riboside transmembrane transporter activity Enables the transfer of nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:33163 molecular_function owl:Class GO:0034258 biolink:NamedThing nicotinamide riboside transport The directed movement of a nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035034 biolink:NamedThing histone acetyltransferase regulator activity Binds to and modulates the activity of histone acetyltransferase. tmpzr1t_l9r_go_relaxed.owl histone acetylase regulator activity See also the molecular function term 'histone acetyltransferase activity ; GO:0004402'. molecular_function owl:Class GO:0035035 biolink:NamedThing histone acetyltransferase binding Binding to an histone acetyltransferase. tmpzr1t_l9r_go_relaxed.owl histone acetylase binding molecular_function owl:Class GO:0010056 biolink:NamedThing atrichoblast fate specification The process involved in the specification of an atrichoblast. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010055 biolink:NamedThing atrichoblast differentiation The process in which a relatively unspecialized cell acquires the specialized features of an atrichoblast, a root epidermal cell that will not give rise to a root hair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075186 biolink:NamedThing negative regulation of infection cushion formation Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont infection cushion formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of infection cushion formation on or near host biological_process owl:Class GO:0075183 biolink:NamedThing infection cushion formation The process in which an organized mass of hyphae is formed and numerous infective hyphae develop from the hyphae mass. tmpzr1t_l9r_go_relaxed.owl infection cushion formation on or near host biological_process owl:Class GO:0014801 biolink:NamedThing longitudinal sarcoplasmic reticulum The portion of the free sarcoplasmic reticulum consisting of longitudinal tubules that connect terminal cisternae. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016529 biolink:NamedThing sarcoplasmic reticulum A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Endoplasmic_reticulum#Sarcoplasmic_reticulum See also the cellular component terms 'sarcoplasm ; GO:0016528', 'nuclear envelope ; GO:0005635' and 'endoplasmic reticulum ; GO:0005783'. GO:0008221 cellular_component owl:Class GO:0001549 biolink:NamedThing cumulus cell differentiation The process in which a subpopulation of granulosa cells surrounding the oocyte acquires the specialized features of an ovarian cumulus cell. tmpzr1t_l9r_go_relaxed.owl ovarian cumulus cell differentiation biological_process owl:Class GO:0048165 biolink:NamedThing fused antrum stage The stage in oogenesis when the antral spaces fuse to form a single antral space. The oocyte is suspended in the cumulus oophorous and the first polar body in the perivitelline space. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 8 biological_process owl:Class GO:0048749 biolink:NamedThing compound eye development The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye. tmpzr1t_l9r_go_relaxed.owl insect-type retina development GO:0007456 biological_process owl:Class GO:0005801 biolink:NamedThing cis-Golgi network The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl Golgi cis-face|cis Golgi network|cis face|Golgi cis face|forming face NIF_Subcellular:sao632188024 The CGN is not considered part of the Golgi apparatus but is a separate organelle. cellular_component owl:Class GO:0005794 biolink:NamedThing Golgi apparatus A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. tmpzr1t_l9r_go_relaxed.owl Golgi ribbon|Golgi complex|Golgi NIF_Subcellular:sao451912436|Wikipedia:Golgi_apparatus Note that the Golgi apparatus can be located in various places in the cytoplasm. In plants and lower animal cells, the Golgi apparatus exists as many copies of discrete stacks dispersed throughout the cytoplasm, while the Golgi apparatus of interphase mammalian cells is a juxtanuclear, often pericentriolar reticulum, where the discrete Golgi stacks are stitched together to form a compact and interconnected ribbon, sometimes called the Golgi ribbon. cellular_component owl:Class GO:0032635 biolink:NamedThing interleukin-6 production The appearance of interleukin-6 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-6 production|interleukin-6 secretion|interleukin-6 biosynthetic process GO:0042226|GO:0072604 biological_process owl:Class GO:0090073 biolink:NamedThing positive regulation of protein homodimerization activity Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T11:15:40Z biological_process owl:Class GO:0042803 biolink:NamedThing protein homodimerization activity Binding to an identical protein to form a homodimer. tmpzr1t_l9r_go_relaxed.owl dimerization activity molecular_function owl:Class GO:0020015 biolink:NamedThing glycosome A membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Glycosome cellular_component owl:Class GO:0060289 biolink:NamedThing compartment boundary maintenance A homeostatic process involved in the maintenance of a compartment boundary. A compartment boundary is a lineage restriction boundary within a developing tissue which does not correspond to some morphological barrier. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007386 biolink:NamedThing compartment pattern specification The regionalization process in which embryonic segments are divided into compartments that will result in differences in cell differentiation. tmpzr1t_l9r_go_relaxed.owl compartment specification biological_process owl:Class GO:1990176 biolink:NamedThing MalFGK2 complex Protein complex involved in maltose transport through the plasma membrane. In E. coli, the complex is a tetramer and consists of a cytoplasmic ATPase MalK homodimer together with a heterodimeric transmembrane subunit MalF-MalG. tmpzr1t_l9r_go_relaxed.owl MalFGK(2) complex|MalF-MalG-MalK-MalK complex|maltose transport complex, core subunit|maltose transport MalFGK2 complex|MalF-MalG-MalK(2) complex The MalFGK2 complex lacks the maltose-binding subunit present in GO:1990060. bhm 2013-08-30T11:10:14Z cellular_component owl:Class GO:1990060 biolink:NamedThing maltose transport complex Protein complex facilitating ATP-dependent maltose transport through inner cell membrane (periplasm to cytoplasm) in Gram-negative bacteria. In E. coli the system is composed of a periplasmic maltose-binding protein (MBP), two integral membrane proteins, MalF and MalG, and two copies of the cytoplasmic ATP-binding cassette MalK. tmpzr1t_l9r_go_relaxed.owl maltose ABC transporter complex|maltose ATP-binding cassette transporter complex jl 2013-03-13T13:52:48Z cellular_component owl:Class GO:0070145 biolink:NamedThing mitochondrial asparaginyl-tRNA aminoacylation The process of coupling asparagine to asparaginyl-tRNA in a mitochondrion, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048451 biolink:NamedThing petal formation The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048419 biological_process owl:Class GO:0048446 biolink:NamedThing petal morphogenesis The process in which the anatomical structures of the petal are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048418 biological_process owl:Class GO:0008359 biolink:NamedThing regulation of bicoid mRNA localization Any process that modulates the frequency, rate or extent of the process in which bicoid mRNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl regulation of bicoid mRNA localisation biological_process owl:Class GO:0045450 biolink:NamedThing bicoid mRNA localization Any process in which bicoid mRNA is transported to and maintained within the oocyte as part of the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of bicoid mRNA localization|bicoid mRNA localisation biological_process owl:Class GO:0031347 biolink:NamedThing regulation of defense response Any process that modulates the frequency, rate or extent of a defense response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035580 biolink:NamedThing specific granule lumen The volume enclosed by the membrane of a specific granule, a granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase. tmpzr1t_l9r_go_relaxed.owl secondary granule lumen bf 2010-10-05T01:33:53Z cellular_component owl:Class GO:0042581 biolink:NamedThing specific granule Granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase. tmpzr1t_l9r_go_relaxed.owl secondary granule Wikipedia:Specific_granule cellular_component owl:Class GO:1902847 biolink:NamedThing regulation of neuronal signal transduction Any process that modulates the frequency, rate or extent of neuronal signal transduction. tmpzr1t_l9r_go_relaxed.owl sjp 2014-04-02T10:11:12Z biological_process owl:Class GO:0023041 biolink:NamedThing neuronal signal transduction The process in which an activated neuronal cell receptor conveys information down a signaling pathway, resulting in a change in the function or state of a cell. This process may be intracellular or intercellular. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z biological_process owl:Class GO:0035937 biolink:NamedThing estrogen secretion The regulated release of estrogen into the circulatory system. Estrogen is a steroid hormone that stimulates or controls the development and maintenance of female sex characteristics in mammals. tmpzr1t_l9r_go_relaxed.owl oestrogen secretion bf 2011-07-20T01:14:44Z biological_process owl:Class GO:1902606 biolink:NamedThing regulation of large conductance calcium-activated potassium channel activity Any process that modulates the frequency, rate or extent of large conductance calcium-activated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of BK calcium-activated potassium channel activity|regulation of BK channel activity|regulation of BK KCa channels|regulation of large conductance KCa channels sl 2014-01-02T18:51:03Z biological_process owl:Class GO:0060072 biolink:NamedThing large conductance calcium-activated potassium channel activity Enables the transmembrane transfer of potassium by a channel with a unit conductance of 100 to 220 picoSiemens that opens in response to stimulus by concerted actions of internal calcium ions and membrane potential. Large conductance calcium-activated potassium channels are less sensitive to calcium than are small or intermediate conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl BK calcium-activated potassium channel activity|BK KCa channel activity|BK channel activity|large conductance KCa channel activity GO:0022895 molecular_function owl:Class GO:0061714 biolink:NamedThing folic acid receptor activity Combining selectively with extracellular folic acid and delivering it into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl folate receptor activity dph 2015-06-23T13:36:07Z molecular_function owl:Class GO:1900513 biolink:NamedThing negative regulation of starch utilization system complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of starch utilization system complex assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of starch utilization system complex assembly|downregulation of assembly of starch utilization system complex|down regulation of assembly of starch utilization system complex|down regulation of SUS complex assembly|inhibition of assembly of starch utilization system complex|down regulation of starch utilization system complex assembly|down-regulation of assembly of starch utilization system complex|inhibition of starch utilization system complex assembly|downregulation of SUS complex assembly|inhibition of SUS complex assembly|negative regulation of assembly of starch utilization system complex|down-regulation of SUS complex assembly|downregulation of starch utilization system complex assembly|negative regulation of SUS complex assembly tt 2012-05-02T04:06:54Z biological_process owl:Class GO:0044574 biolink:NamedThing starch utilization system complex assembly The aggregation, arrangement and bonding together of the starch utilization system complex, a complex of cell envelope-associated proteins that degrades glycan. tmpzr1t_l9r_go_relaxed.owl SUS complex assembly|assembly of starch utilization system complex jl 2012-04-19T03:40:24Z biological_process owl:Class GO:0072088 biolink:NamedThing nephron epithelium morphogenesis The process in which the anatomical structures of the nephron epithelium are generated and organized. The nephron epithelium is a tissue that covers the surface of a nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T01:19:06Z biological_process owl:Class GO:0021983 biolink:NamedThing pituitary gland development The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands. tmpzr1t_l9r_go_relaxed.owl hypophysis development biological_process owl:Class GO:0035270 biolink:NamedThing endocrine system development Progression of the endocrine system over time, from its formation to a mature structure. The endocrine system is a system of hormones and ductless glands, where the glands release hormones directly into the blood, lymph or other intercellular fluid, and the hormones circulate within the body to affect distant organs. The major glands that make up the human endocrine system are the hypothalamus, pituitary, thyroid, parathryoids, adrenals, pineal body, and the reproductive glands which include the ovaries and testes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006921 biolink:NamedThing cellular component disassembly involved in execution phase of apoptosis The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis. tmpzr1t_l9r_go_relaxed.owl cellular component disassembly involved in apoptotic process|cellular component disassembly involved in apoptosis|disassembly of cell structures biological_process owl:Class GO:0097194 biolink:NamedThing execution phase of apoptosis A stage of the apoptotic process that starts with the controlled breakdown of the cell through the action of effector caspases or other effector molecules (e.g. cathepsins, calpains etc.). Key steps of the execution phase are rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. tmpzr1t_l9r_go_relaxed.owl apoptosis|execution phase of apoptotic process pr 2011-11-23T09:45:24Z biological_process owl:Class GO:0072178 biolink:NamedThing nephric duct morphogenesis The process in which the anatomical structures of the nephric duct are generated and organized. A nephric duct is a tube that drains a primitive kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:35:29Z biological_process owl:Class GO:0072176 biolink:NamedThing nephric duct development The process whose specific outcome is the progression of a nephric duct over time, from its initial formation to a mature structure. A nephric duct is a tube that drains a primitive kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:27:31Z biological_process owl:Class GO:0007140 biolink:NamedThing male meiotic nuclear division A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the male germline. tmpzr1t_l9r_go_relaxed.owl male meiosis|male nuclear division biological_process owl:Class GO:0002413 biolink:NamedThing tolerance induction to tumor cell A process of tolerance induction which leads to immunological tolerance of a tumor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060426 biolink:NamedThing lung vasculature development The biological process whose specific outcome is the progression of a lung vasculature from an initial condition to its mature state. This process begins with the formation of the lung vasculature and ends with the mature structure. The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs. tmpzr1t_l9r_go_relaxed.owl pulmonary vasculature development biological_process owl:Class GO:0030324 biolink:NamedThing lung development The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000186 biolink:NamedThing negative regulation of phosphate transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of phosphate transmembrane transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of phosphate membrane transport vw 2010-10-15T11:33:08Z biological_process owl:Class GO:0035435 biolink:NamedThing phosphate ion transmembrane transport The process in which a phosphate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl phosphate ion membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T11:24:06Z biological_process owl:Class GO:1902917 biolink:NamedThing positive regulation of mating projection assembly Any process that activates or increases the frequency, rate or extent of mating projection assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of mating projection biogenesis|up-regulation of mating projection assembly|up regulation of mating projection assembly|positive regulation of mating projection biogenesis|upregulation of mating projection assembly|up-regulation of mating projection biogenesis|upregulation of mating projection biogenesis|activation of mating projection biogenesis|activation of mating projection assembly di 2014-04-20T11:18:03Z biological_process owl:Class GO:1903354 biolink:NamedThing regulation of distal tip cell migration Any process that modulates the frequency, rate or extent of distal tip cell migration. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-21T10:05:08Z biological_process owl:Class GO:1990201 biolink:NamedThing alkanesulfonate monooxygenase complex A protein complex capable of alkanesulfonate monooxygenase activity. Involved in the utilization of alkanesulfonates as sulfur sources under conditions of sulfate or cysteine starvation, catalyzing the conversion of alkanesulfonates into aldehydes and sulfite. In E.coli the complex consists of a SsuD tetramer. tmpzr1t_l9r_go_relaxed.owl SsuD complex bhm 2013-10-03T14:55:08Z cellular_component owl:Class GO:0005829 biolink:NamedThing cytosol The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cytosol|NIF_Subcellular:sao101633890 cellular_component owl:Class GO:0048199 biolink:NamedThing vesicle targeting, to, from or within Golgi The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation. tmpzr1t_l9r_go_relaxed.owl dictyosome vesicle targeting|Golgi vesicle targeting|vesicle targeting, to, from or within dictyosome biological_process owl:Class GO:0048193 biolink:NamedThing Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. tmpzr1t_l9r_go_relaxed.owl Golgi-derived vesicle transport biological_process owl:Class GO:0001873 biolink:NamedThing polysaccharide immune receptor activity Combining with a polysaccharide and transmitting the signal to initiate an innate immune response. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl polysaccharide receptor activity molecular_function owl:Class GO:0097693 biolink:NamedThing ocelloid Eye-like subcellular structure found in dinoflagellates (a large group of single-celled eukaryotes). Consists of subcellular analogues to a cornea, lens, iris, and retina. Ocelloids are built from pre-existing organelles, including a cornea-like layer made of mitochondria and a retinal body made of anastomosing plastids. tmpzr1t_l9r_go_relaxed.owl pr 2015-11-13T14:27:01Z cellular_component owl:Class GO:0048702 biolink:NamedThing embryonic neurocranium morphogenesis The process in which the anatomical structures of the neurocranium are generated and organized during the embryonic phase. The neurocranium is the portion of the vertebrate skull surrounding the brain. tmpzr1t_l9r_go_relaxed.owl embryonic chondrocranium morphogenesis|embryonic braincase morphogenesis biological_process owl:Class GO:0048701 biolink:NamedThing embryonic cranial skeleton morphogenesis The process in which the anatomical structures of the cranial skeleton are generated and organized during the embryonic phase. tmpzr1t_l9r_go_relaxed.owl embryonic cranium morphogenesis biological_process owl:Class GO:1905365 biolink:NamedThing regulation of intralumenal vesicle formation Any process that modulates the frequency, rate or extent of intralumenal vesicle formation. tmpzr1t_l9r_go_relaxed.owl regulation of endosome membrane budding bc 2016-08-16T12:00:01Z biological_process owl:Class GO:1904687 biolink:NamedThing positive regulation of mitotic spindle disassembly Any process that activates or increases the frequency, rate or extent of mitotic spindle disassembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of spindle degradation during mitosis|positive regulation of spindle breakdown during mitosis|positive regulation of mitotic spindle catabolism|up-regulation of mitotic spindle catabolism|up regulation of spindle breakdown during mitosis|upregulation of spindle degradation during mitosis|up-regulation of mitotic spindle disassembly|up-regulation of spindle breakdown during mitosis|positive regulation of spindle degradation during mitosis|activation of mitotic spindle disassembly|upregulation of mitotic spindle catabolism|up-regulation of mitotic spindle degradation|activation of spindle degradation during mitosis|upregulation of mitotic spindle degradation|up regulation of mitotic spindle breakdown|upregulation of spindle breakdown during mitosis|activation of mitotic spindle catabolism|up regulation of mitotic spindle disassembly|up-regulation of spindle disassembly during mitosis|upregulation of mitotic spindle breakdown|upregulation of mitotic spindle disassembly|positive regulation of spindle disassembly during mitosis|upregulation of spindle disassembly during mitosis|positive regulation of mitotic spindle degradation|up regulation of spindle disassembly during mitosis|up regulation of spindle degradation during mitosis|activation of mitotic spindle breakdown|up-regulation of mitotic spindle breakdown|activation of spindle disassembly during mitosis|activation of mitotic spindle degradation|up regulation of mitotic spindle degradation|up regulation of mitotic spindle catabolism|positive regulation of mitotic spindle breakdown|activation of spindle breakdown during mitosis al 2015-09-24T14:20:13Z biological_process owl:Class GO:0051228 biolink:NamedThing mitotic spindle disassembly The controlled breakdown of the spindle during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl spindle disassembly during mitosis|mitotic spindle catabolism|spindle breakdown during mitosis|mitotic spindle breakdown|mitotic spindle degradation|spindle degradation during mitosis biological_process owl:Class GO:0010731 biolink:NamedThing protein glutathionylation The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. tmpzr1t_l9r_go_relaxed.owl protein amino acid glutathionylation biological_process owl:Class GO:0002158 biolink:NamedThing osteoclast proliferation The multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. tmpzr1t_l9r_go_relaxed.owl hjd 2010-02-03T01:50:37Z biological_process owl:Class GO:0061079 biolink:NamedThing left horn of sinus venosus development The progression of the left horn of the sinus venosus from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-08T02:40:27Z biological_process owl:Class GO:0003235 biolink:NamedThing sinus venosus development The progression of the sinus venosus over time, from its formation to the mature structure. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:12:34Z biological_process owl:Class GO:0071892 biolink:NamedThing thrombocyte activation A cell activation process that occurs in thrombocytes and consists of a series of progressive, overlapping events including shape change, adhesiveness, and aggregation, which, when carried through to completion, lead to the formation of a stable hemostatic plug. Thrombocytes are nucleated cells found in non-mammalian vertebrates and are involved in hemostasis. They are the functional equivalent of the non-nucleated platelets found in mammals. tmpzr1t_l9r_go_relaxed.owl blood coagulation, thrombocyte activation mah 2010-09-14T03:06:33Z biological_process owl:Class GO:0007596 biolink:NamedThing blood coagulation The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers. tmpzr1t_l9r_go_relaxed.owl blood clotting Wikipedia:Coagulation biological_process owl:Class GO:0075290 biolink:NamedThing regulation of aplanospore formation Any process that modulates the frequency, rate or extent of aplanospore formation, a process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098535 biolink:NamedThing de novo centriole assembly involved in multi-ciliated epithelial cell differentiation Centriole assembly in which a centriole arises de novo by a process involving an electron-dense structure known as a deuterosome, rather than by duplication of an existing centriole, and occurring as part of multi-ciliated epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl deuterosome pathway|multiciliogenesis|de novo centriole assembly via deuterosome|deuterosomal basal body biogenesis|centriole amplification|deuterosome-mediated centriole biogenesis|multiciliation|de novo centriole assembly In most eukaryotic cells, 'centriole' (GO:0005814) and 'ciliary basal body' (GO:0036064) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component. dos 2013-10-22T16:03:13Z biological_process owl:Class GO:1903251 biolink:NamedThing multi-ciliated epithelial cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a multi-ciliated epithelial cell. tmpzr1t_l9r_go_relaxed.owl multiciliate cell differentiation tb 2014-08-05T19:21:21Z biological_process owl:Class GO:0031051 biolink:NamedThing scnRNA processing Cleavage of noncoding, double-stranded RNAs transcribed from the micronuclear genome to produce scnRNAs, small RNAs (~28 nucleotides) that direct the deletion of micronuclear-limited sequences from the developing macronuclear genome. tmpzr1t_l9r_go_relaxed.owl scnRNA production biological_process owl:Class GO:0031049 biolink:NamedThing programmed DNA elimination The DNA metabolic process in which micronuclear-limited sequences, internal eliminated sequences (IES) and breakage eliminated sequences (BES) are removed from the developing macronucleus (anlage) of a ciliate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099123 biolink:NamedThing somato-dendritic dopamine secretion The regulated release of dopamine from the somatodendritic compartment (cell body or dendrites) of a neuron. tmpzr1t_l9r_go_relaxed.owl STD DA release|STD dopamine release|somatodendritic dopamine release biological_process owl:Class GO:0036477 biolink:NamedThing somatodendritic compartment The region of a neuron that includes the cell body (cell soma) and dendrite(s), but excludes the axon. tmpzr1t_l9r_go_relaxed.owl bf 2014-07-24T10:06:19Z cellular_component owl:Class GO:0045697 biolink:NamedThing regulation of synergid differentiation Any process that modulates the frequency, rate or extent of synergid cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of synergid cell differentiation biological_process owl:Class GO:0009563 biolink:NamedThing synergid differentiation The process in which an uncellularized nucleus cellularizes and acquires the specialized features of a synergid cell. tmpzr1t_l9r_go_relaxed.owl synergid cell differentiation biological_process owl:Class GO:0070733 biolink:NamedThing protein adenylyltransferase activity Catalysis of the reaction: ATP + protein = diphosphate + adenylyl-protein; mediates the addition of an adenylyl (adenosine 5'-monophosphate; AMP group) to specific residues of target proteins. tmpzr1t_l9r_go_relaxed.owl adenosine monophosphate-protein transferase activity|AMPylator EC:2.7.7.n1 mah 2009-06-18T01:09:15Z molecular_function owl:Class GO:0015658 biolink:NamedThing branched-chain amino acid transmembrane transporter activity Enables the transfer of branched-chain amino acids from one side of a membrane to the other. Branched-chain amino acids are amino acids with a branched carbon skeleton without rings. tmpzr1t_l9r_go_relaxed.owl branched-chain aliphatic amino acid transmembrane transporter activity|branched-chain aliphatic amino acid transporter activity|leucine/valine/isoleucine permease activity|valine/tyrosine/tryptophan permease activity Reactome:R-HSA-9672770 GO:1901240 molecular_function owl:Class GO:0015803 biolink:NamedThing branched-chain amino acid transport The directed movement of branched-chain amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Branched-chain amino acids are amino acids with a branched carbon skeleton without rings. tmpzr1t_l9r_go_relaxed.owl branched-chain amino-acid anion transport|branched-chain amino-acid anions transport|branched-chain aliphatic amino acid transport GO:1900755 biological_process owl:Class GO:0014069 biolink:NamedThing postsynaptic density An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. tmpzr1t_l9r_go_relaxed.owl neuronal postsynaptic density|post-synaptic density|post synaptic density|postsynaptic density of dendrite Wikipedia:Postsynaptic_density|NIF_Subcellular:sao1196688972 pr 2013-07-02T09:44:28Z GO:0097481|GO:0097483 cellular_component owl:Class GO:0031241 biolink:NamedThing periplasmic side of cell outer membrane The side (leaflet) of the outer membrane that faces the periplasm of the cell. tmpzr1t_l9r_go_relaxed.owl internal side of outer membrane|internal leaflet of cell outer membrane|internal side of cell outer membrane In GO, 'internal side' still refers to part of the membrane and does not refer to components beyond (inside of) the membrane. cellular_component owl:Class GO:1903438 biolink:NamedThing positive regulation of mitotic cytokinetic process Any process that activates or increases the frequency, rate or extent of mitotic cytokinetic process. tmpzr1t_l9r_go_relaxed.owl activation of mitotic cytokinetic process|upregulation of mitotic cytokinetic process|up-regulation of mitotic cytokinetic process|up regulation of mitotic cytokinetic process tb 2014-09-15T23:11:55Z biological_process owl:Class GO:0070971 biolink:NamedThing endoplasmic reticulum exit site An endoplasmic reticulum part at which COPII-coated vesicles are produced. tmpzr1t_l9r_go_relaxed.owl ER exit site|transitional ER NIF_Subcellular:sao124393998 mah 2009-10-02T12:19:23Z cellular_component owl:Class GO:0039007 biolink:NamedThing pronephric nephron morphogenesis The process in which the anatomical structures of the pronephric nephron are generated and organized. A pronephric nephron is the functional unit of the pronephros. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:38:53Z biological_process owl:Class GO:0039019 biolink:NamedThing pronephric nephron development The process whose specific outcome is the progression of the pronephric nephron over time, from its formation to the mature structure. A pronephric nephron is the functional unit of the pronephros. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T10:10:20Z biological_process owl:Class GO:2000675 biolink:NamedThing negative regulation of type B pancreatic cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of type B pancreatic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of pancreatic beta cell apoptosis|negative regulation of type B pancreatic cell apoptosis|negative regulation of pancreatic B cell apoptosis pr 2011-05-09T11:51:12Z biological_process owl:Class GO:0097050 biolink:NamedThing type B pancreatic cell apoptotic process Any apoptotic process in a type B pancreatic cell, a cell located towards center of the islets of Langerhans that secretes insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic B cell apoptosis|type B pancreatic cell apoptosis|pancreatic beta cell apoptosis pr 2011-05-04T02:24:38Z biological_process owl:Class GO:0030217 biolink:NamedThing T cell differentiation The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte differentiation|T lymphocyte differentiation|T cell development|T-cell differentiation Note that the term 'thymocyte differentiation' was merged into this term because thymocytes are T cells, and thus the term was essentially redundant. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. GO:0046652|GO:0042112 biological_process owl:Class GO:0048660 biolink:NamedThing regulation of smooth muscle cell proliferation Any process that modulates the frequency, rate or extent of smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of SMC proliferation biological_process owl:Class GO:0048659 biolink:NamedThing smooth muscle cell proliferation The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl SMC proliferation biological_process owl:Class GO:0032915 biolink:NamedThing positive regulation of transforming growth factor beta2 production Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta2. tmpzr1t_l9r_go_relaxed.owl positive regulation of transforming growth factor-beta2 production|up regulation of transforming growth factor-beta2 production|positive regulation of TGFB2 production|upregulation of transforming growth factor-beta2 production|stimulation of transforming growth factor-beta2 production|up-regulation of transforming growth factor-beta2 production|positive regulation of TGF-B2 production|activation of transforming growth factor-beta2 production biological_process owl:Class GO:0032906 biolink:NamedThing transforming growth factor beta2 production The appearance of transforming growth factor-beta2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TGFB2 production|TGF-B2 production|transforming growth factor-beta2 production biological_process owl:Class GO:0090242 biolink:NamedThing retinoic acid receptor signaling pathway involved in somitogenesis The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to somitogenesis. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in somitogenesis tb 2010-01-22T10:42:54Z biological_process owl:Class GO:0001756 biolink:NamedThing somitogenesis The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo. tmpzr1t_l9r_go_relaxed.owl formation of mesodermal clusters Wikipedia:Somitogenesis biological_process owl:Class GO:0072218 biolink:NamedThing metanephric ascending thin limb development The process whose specific outcome is the progression of a metanephric ascending thin limb over time, from its formation to the mature structure. The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:34:42Z biological_process owl:Class GO:0072236 biolink:NamedThing metanephric loop of Henle development The process whose specific outcome is the progression of the metanephric loop of Henle over time, from its formation to the mature structure. The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric intermediate tubule development mah 2010-03-18T03:46:18Z biological_process owl:Class GO:0036286 biolink:NamedThing eisosome filament A filamentous cortical structure formed, in S. pombe, by the eisosome component Pil1. tmpzr1t_l9r_go_relaxed.owl linear eisosome bf 2012-07-16T10:52:24Z cellular_component owl:Class GO:0032126 biolink:NamedThing eisosome A cell part that is composed of the eisosome membrane or MCC domain, a furrow-like plasma membrane sub-domain and associated integral transmembrane proteins, and the proteins (eisosome filaments) that form a scaffolding lattice on the cytoplasmic face. Eisosomes broadly affect overall plasma membrane organization. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Eisosome cellular_component owl:Class GO:0106020 biolink:NamedThing regulation of vesicle docking Any process that modulates the frequency, rate or extent of vesicle docking. tmpzr1t_l9r_go_relaxed.owl regulation of vesicle to membrane docking hjd 2017-05-16T13:58:54Z biological_process owl:Class GO:0000712 biolink:NamedThing resolution of meiotic recombination intermediates The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged. tmpzr1t_l9r_go_relaxed.owl resolution of meiotic joint molecules as recombinants biological_process owl:Class GO:0021900 biolink:NamedThing ventricular zone cell fate commitment The commitment of neuroblast to become a basal progenitor cell. Basal progenitor cells are neuronal precursor cells that are committed to becoming neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021863 biolink:NamedThing forebrain neuroblast differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of basal progenitor cells, neuroblasts that lose their contacts with the ventricular surface. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl abventricular progenitor cell differentiation|non-surface dividing progenitor cell differentiation|intermediate progenitor cell differentiation biological_process owl:Class GO:0097562 biolink:NamedThing left lateral basal body pair Set of two basal bodies found in Giardia species (trophozoite stage). It comprises the anterior and ventral basal bodies located to the right of the left nucleus of the trophozoite when viewed dorsally. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:09:11Z cellular_component owl:Class GO:0042995 biolink:NamedThing cell projection A prolongation or process extending from a cell, e.g. a flagellum or axon. tmpzr1t_l9r_go_relaxed.owl cellular process|cellular projection|cell process cellular_component owl:Class GO:0034080 biolink:NamedThing CENP-A containing chromatin assembly The formation of chromatin containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres. tmpzr1t_l9r_go_relaxed.owl DNA replication-independent nucleosome assembly at centromere|CenH3-containing nucleosome assembly at centromere|centromere specific nucleosome exchange|centromeric DNA replication-independent nucleosome assembly|CENP-A deposition|CENP-A loading|CENP-A containing nucleosome assembly at centromere|centromere-specific histone exchange|CENP-A containing nucleosome assembly https://github.com/geneontology/go-ontology/issues/22130 GO:0034509 biological_process owl:Class GO:0009573 biolink:NamedThing chloroplast ribulose bisphosphate carboxylase complex A complex, located in the chloroplast, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl chloroplast RubisCO complex cellular_component owl:Class GO:0009507 biolink:NamedThing chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chloroplast cellular_component owl:Class GO:0021536 biolink:NamedThing diencephalon development The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042175 biolink:NamedThing nuclear outer membrane-endoplasmic reticulum membrane network The continuous network of membranes encompassing the nuclear outer membrane and the endoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl NE-ER continuum|nuclear envelope-endoplasmic reticulum network|nuclear envelope-endoplasmic reticulum continuum|nuclear membrane-endoplasmic reticulum continuum|nuclear membrane-ER network|nuclear envelope-ER network|NE-ER network cellular_component owl:Class GO:0012505 biolink:NamedThing endomembrane system A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Endomembrane_system cellular_component owl:Class GO:0014034 biolink:NamedThing neural crest cell fate commitment The process in which a cell becomes committed to become a neural crest cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014029 biolink:NamedThing neural crest formation The formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060466 biolink:NamedThing activation of meiosis involved in egg activation Any process that starts the inactive process of meiosis in an egg after the egg has been fertilized or physiologically activated. Eggs generally arrest in meiosis and complete the process after activation. tmpzr1t_l9r_go_relaxed.owl reactivation of meiosis after fertilization|resumption of meiosis involved in egg activation biological_process owl:Class GO:0007343 biolink:NamedThing egg activation The process in which the egg becomes metabolically active, initiates protein and DNA synthesis and undergoes structural changes to its cortex and/or cytoplasm. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Egg_activation biological_process owl:Class GO:0045951 biolink:NamedThing positive regulation of mitotic recombination Any process that activates or increases the frequency, rate or extent of DNA recombination during mitosis. tmpzr1t_l9r_go_relaxed.owl up-regulation of mitotic recombination|activation of mitotic recombination|up regulation of mitotic recombination|stimulation of mitotic recombination|upregulation of mitotic recombination|positive regulation of recombination within rDNA repeats biological_process owl:Class GO:0031951 biolink:NamedThing positive regulation of glucocorticoid catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl upregulation of glucocorticoid catabolic process|activation of glucocorticoid catabolic process|stimulation of glucocorticoid catabolic process|up regulation of glucocorticoid catabolic process|up-regulation of glucocorticoid catabolic process biological_process owl:Class GO:0006713 biolink:NamedThing glucocorticoid catabolic process The chemical reactions and pathways resulting in the breakdown of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. tmpzr1t_l9r_go_relaxed.owl glucocorticoid catabolism|glucocorticoid degradation|glucocorticoid breakdown biological_process owl:Class GO:0010891 biolink:NamedThing negative regulation of sequestering of triglyceride Any process that decreases the rate, frequency or extent of sequestering of triglyceride. Triglyceride sequestration is the process of binding or confining any triester of glycerol such that it is separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl negative regulation of sequestering of triacylglycerol|negative regulation of triglyceride sequestration biological_process owl:Class GO:0030730 biolink:NamedThing sequestering of triglyceride The process of binding or confining any triester of glycerol such that it is separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl triglyceride sequestration|sequestration of triacylglycerol|retention of triacylglycerol|triglyceride sequestering|storage of triglyceride|retention of triglyceride|sequestration of triglyceride|sequestering of triacylglycerol|triglyceride retention|triacylglycerol retention|triglyceride storage|triacylglycerol sequestering|triacylglycerol storage|triacylglycerol sequestration|storage of triacylglycerol biological_process owl:Class GO:0000221 biolink:NamedThing vacuolar proton-transporting V-type ATPase, V1 domain The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar hydrogen ion-transporting ATPase V1 domain Note that this domain generally consists of eight subunits. cellular_component owl:Class GO:1902100 biolink:NamedThing negative regulation of metaphase/anaphase transition of cell cycle Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle. tmpzr1t_l9r_go_relaxed.owl inhibition of metaphase/anaphase transition of cell cycle|down-regulation of metaphase/anaphase transition of cell cycle|down regulation of metaphase/anaphase transition of cell cycle|downregulation of metaphase/anaphase transition of cell cycle jl 2013-05-02T12:45:20Z biological_process owl:Class GO:0044784 biolink:NamedThing metaphase/anaphase transition of cell cycle The cell cycle process in which a cell progresses from metaphase to anaphase as part of the cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-05-02T13:09:34Z biological_process owl:Class GO:0048441 biolink:NamedThing petal development The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl GO:0048417 biological_process owl:Class GO:0048465 biolink:NamedThing corolla development The process whose specific outcome is the progression of the corolla over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031230 biolink:NamedThing intrinsic component of cell outer membrane The component of the cell outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to cell outer membrane cellular_component owl:Class GO:0009279 biolink:NamedThing cell outer membrane A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures. tmpzr1t_l9r_go_relaxed.owl outer membrane of cell To annotate the plasma (cytoplasmic) membrane, see instead GO:0005886. cellular_component owl:Class GO:0090661 biolink:NamedThing box H/ACA telomerase RNP complex A box H/ACA ribonucleoprotein complex that contains the RNA component of vertebrate telomerase, the enzyme essential for the replication of chromosome termini in most eukaryotes. This ribonucleoprotein complex is a structural box H/ACA RNP, which does not have the catalytic pseudouridylation function shared by the majority of H/ACA RNPs present in the cell. tmpzr1t_l9r_go_relaxed.owl tb 2015-09-21T14:46:16Z cellular_component owl:Class GO:0005697 biolink:NamedThing telomerase holoenzyme complex Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0038030 biolink:NamedThing non-canonical Wnt signaling pathway via MAPK cascade The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, where the signal is passed on via the MAPKKK cascade. tmpzr1t_l9r_go_relaxed.owl non-canonical Wnt receptor signaling pathway via MAPKKK cascade|non-canonical Wnt receptor signalling pathway via MAPKKK cascade|non-canonical Wnt-activated signaling pathway via MAPK cascade|non-canonical Wnt receptor signaling pathway via MAPK cascade|non-canonical Wnt receptor signaling pathway via MAPK signaling bf 2011-09-08T01:46:07Z biological_process owl:Class GO:1903573 biolink:NamedThing negative regulation of response to endoplasmic reticulum stress Any process that stops, prevents or reduces the frequency, rate or extent of a response to endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl downregulation of ER stress response|down regulation of response to ER stress|negative regulation of cellular response to endoplasmic reticulum stress|negative regulation of ER stress response|negative regulation of response to ER stress|down regulation of response to endoplasmic reticulum stress|down regulation of cellular response to endoplasmic reticulum stress|inhibition of response to endoplasmic reticulum stress|downregulation of response to ER stress|inhibition of ER stress response|down-regulation of response to endoplasmic reticulum stress|inhibition of cellular response to endoplasmic reticulum stress|downregulation of response to endoplasmic reticulum stress|down regulation of ER stress response|inhibition of response to ER stress|down-regulation of ER stress response|down-regulation of response to ER stress|down-regulation of cellular response to endoplasmic reticulum stress|downregulation of cellular response to endoplasmic reticulum stress bf 2014-10-27T16:15:30Z biological_process owl:Class GO:0034976 biolink:NamedThing response to endoplasmic reticulum stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. tmpzr1t_l9r_go_relaxed.owl response to ER stress|cellular response to endoplasmic reticulum stress|ER stress response biological_process owl:Class GO:0034340 biolink:NamedThing response to type I interferon Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type I interferon stimulus. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl response to type I IFN biological_process owl:Class GO:0090398 biolink:NamedThing cellular senescence A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest. tmpzr1t_l9r_go_relaxed.owl tb 2011-01-05T02:27:08Z biological_process owl:Class GO:0035514 biolink:NamedThing DNA demethylase activity Catalysis of the removal of a methyl group from one or more nucleosides within a DNA molecule. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T02:36:43Z molecular_function owl:Class GO:0060175 biolink:NamedThing brain-derived neurotrophic factor-activated receptor activity Combining with a brain-derived neurotrophic factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl brain-derived neurotrophic factor receptor activity|BDNF receptor activity|BDNF-activated receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand BDNF. For receptors that bind other growth factors, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:0031547 biolink:NamedThing brain-derived neurotrophic factor receptor signaling pathway The series of molecular signals generated as a consequence of a brain-derived neurotrophic factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl BDNF signalling pathway|BDNF receptor signaling pathway|brain-derived neurotrophic factor receptor signalling pathway biological_process owl:Class GO:0090229 biolink:NamedThing negative regulation of red or far-red light signaling pathway Any process that decreases the rate, frequency or extent of the red or far-red signaling pathway, the series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. tmpzr1t_l9r_go_relaxed.owl negative regulation of red or far-red light signalling pathway|negative regulation of phytochrome signaling pathway tb 2010-01-19T04:03:29Z biological_process owl:Class GO:0010017 biolink:NamedThing red or far-red light signaling pathway The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl red/far red light signaling pathway|phytochrome signaling pathway|red or far-red light signalling pathway|red or far-red light signal transduction|red or far red light signaling pathway biological_process owl:Class GO:0001556 biolink:NamedThing oocyte maturation A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Oocyte_maturation biological_process owl:Class GO:0042651 biolink:NamedThing thylakoid membrane The pigmented membrane of any thylakoid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033081 biolink:NamedThing regulation of T cell differentiation in thymus Any process that modulates the frequency, rate or extent of T cell differentiation in the thymus. tmpzr1t_l9r_go_relaxed.owl regulation of T cell development in thymus|regulation of thymocyte differentiation|regulation of thymocyte cell differentiation|regulation of thymic T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905336 biolink:NamedThing negative regulation of aggrephagy Any process that stops, prevents or reduces the frequency, rate or extent of aggrephagy. tmpzr1t_l9r_go_relaxed.owl down regulation of aggrephagy|inhibition of aggrephagy|downregulation of aggrephagy|down-regulation of aggrephagy pad 2016-07-26T13:41:54Z biological_process owl:Class GO:0005200 biolink:NamedThing structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048482 biolink:NamedThing plant ovule morphogenesis The process in which the anatomical structures of the ovule are generated and organized. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048445 biolink:NamedThing carpel morphogenesis The process in which the anatomical structures of the carpel are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048430 biological_process owl:Class GO:1901260 biolink:NamedThing peptidyl-lysine hydroxylation involved in bacterial-type EF-P lysine modification Any peptidyl-lysine hydroxylation that is involved in bacterial-type EF-P lysine modification. tmpzr1t_l9r_go_relaxed.owl EF-P lysine hydroxylation bf 2012-08-14T13:20:12Z biological_process owl:Class GO:0072580 biolink:NamedThing bacterial-type EF-P lysine modification The modification of a lysine residue in a protein to produce (2S)-2-amino-6-([(3S)-3,6-diaminohexanoyl]amino)hexanoic acid, and the subsequent hydroxylation of the modified lysine residue. This modification is observed in, and is probably unique to, the prokaryotic translation elongation factor P (EF-P). tmpzr1t_l9r_go_relaxed.owl EF-P modification pathway The EF-P modification pathway is now thought to be composed of three steps: conversion of alpha-lysyl-EF-P to beta-lysyl-EF-P, lysylation of Lys34, and hydroxylation of Lys34. mah 2011-02-07T11:47:33Z biological_process owl:Class GO:0046860 biolink:NamedThing glycosome membrane The lipid bilayer surrounding a glycosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061187 biolink:NamedThing regulation of ribosomal DNA heterochromatin assembly Any process that modulates the rate, frequency, or extent of the repression of assembly of rDNA heterochromatin. tmpzr1t_l9r_go_relaxed.owl regulation of chromatin silencing at rDNA https://github.com/geneontology/go-ontology/issues/19238 dph 2010-07-14T09:04:16Z biological_process owl:Class GO:0000183 biolink:NamedThing rDNA heterochromatin assembly The assembly of chromatin characterized by the modified histone H3K9me3, into heterochromatin, resulting in the repression of transcription of rDNA. tmpzr1t_l9r_go_relaxed.owl rDNA chromatin silencing|heterochromatic silencing at rDNA|chromatin silencing at ribosomal DNA|chromatin silencing at rDNA https://github.com/geneontology/go-ontology/issues/19238 biological_process owl:Class GO:1904701 biolink:NamedThing Wnt-Frizzled-LRP5/6 complex assembly The aggregation, arrangement and bonding together of a set of components to form a Wnt-Frizzled-LRP5/6 complex. tmpzr1t_l9r_go_relaxed.owl WNT-FZD-LRP5 complex assembly|Wnt-induced Frizzled-LRP5/6 complex formation|Frizzled-LRP5/6 complex formation|Wnt-induced Frizzled-LRP5/6 complex assembly|Wnt-FZD-LRP5/6 trimeric complex formation|WNT-FZD-LRP5 complex formation|Wnt-FZD-LRP5/6 trimeric complex assembly|Frizzled-LRP5/6 complex assembly|WNT-FZD-LRP6 complex assembly|WNT-FZD-LRP6 complex formation|Wnt receptor complex assembly bf 2015-10-01T09:37:57Z biological_process owl:Class GO:0060944 biolink:NamedThing neural crest-derived cardiac fibroblast cell fate commitment The commitment of neural crest cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T02:42:39Z biological_process owl:Class GO:0060942 biolink:NamedThing neural crest-derived cardiac fibroblast cell differentiation The process in which a neural crest cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:54:19Z biological_process owl:Class GO:1990971 biolink:NamedThing EMILIN complex Glycoprotein complex of the C1q/TNF superfamily found in the extracellular matrix (ECM) where it is an important component of the elastic fiber system. A homotrimer that will combine to form supramolecular EMILIN structures. tmpzr1t_l9r_go_relaxed.owl EMILIN-2 complex|Elastic microfibrillar interface 1 complex|EMILIN-1 complex|Elastic microfibrillar interface 2 complex An example of this is EMILIN-1 in human (Q9Y6C2) in PMID:10821830 (inferred from direct assay). bhm 2016-06-21T14:41:18Z cellular_component owl:Class GO:0086094 biolink:NamedThing positive regulation of ryanodine-sensitive calcium-release channel activity by adrenergic receptor signaling pathway involved in positive regulation of cardiac muscle contraction An adrenergic receptor signaling pathway that contributes to an increase in frequency or rate of cardiac muscle contraction through phosphorylation and enhancement of the ryanodine receptor, a calcium-activated calcium-release channel found in the membrane of the sarcoplasmic reticulum. An adrenergic receptor-activated adenylate cyclase generates cAMP. cAMP then activates the cAMP-dependent protein kinase A (PKA), which phosphorylates the ryanodine receptor (RyR). PKA-phosphorylation of RyR enhances channel activity by sensitizing the channel to cytosolic calcium. Cytosolic calcium stimulates contractile proteins to promote muscle contraction. tmpzr1t_l9r_go_relaxed.owl adrenergic receptor signaling pathway involved in positive regulation of cardiac muscle contraction via ryanodine receptor phosphorylation bf biological_process owl:Class GO:0060452 biolink:NamedThing positive regulation of cardiac muscle contraction Any process that increases the frequency, rate or extent of cardiac muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048636 biolink:NamedThing positive regulation of muscle organ development Any process that activates, maintains or increases the rate of muscle development. tmpzr1t_l9r_go_relaxed.owl up-regulation of muscle development|up regulation of muscle development|stimulation of muscle development|activation of muscle development|upregulation of muscle development biological_process owl:Class GO:0007517 biolink:NamedThing muscle organ development The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014048 biolink:NamedThing regulation of glutamate secretion Any process that modulates the frequency, rate or extent of the controlled release of glutamate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048492 biolink:NamedThing ribulose bisphosphate carboxylase complex A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl RubisCO complex cellular_component owl:Class GO:0002428 biolink:NamedThing antigen processing and presentation of peptide antigen via MHC class Ib The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC class Ib protein complex on its cell surface. The peptide antigen may originate from an endogenous or exogenous protein. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E family. tmpzr1t_l9r_go_relaxed.owl peptide antigen processing and presentation via MHC class Ib biological_process owl:Class GO:1900677 biolink:NamedThing positive regulation of F-9775B biosynthetic process Any process that activates or increases the frequency, rate or extent of F-9775B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of F-9775B synthesis|positive regulation of F-9775B anabolism|up-regulation of F-9775B biosynthesis|up-regulation of F-9775B biosynthetic process|activation of F-9775B formation|up regulation of F-9775B biosynthetic process|activation of F-9775B anabolism|upregulation of F-9775B biosynthetic process|up-regulation of F-9775B formation|upregulation of F-9775B synthesis|up-regulation of F-9775B anabolism|up regulation of F-9775B synthesis|up regulation of F-9775B biosynthesis|up regulation of F-9775B anabolism|upregulation of F-9775B biosynthesis|up regulation of F-9775B formation|upregulation of F-9775B anabolism|positive regulation of F-9775B formation|activation of F-9775B synthesis|activation of F-9775B biosynthetic process|up-regulation of F-9775B synthesis|activation of F-9775B biosynthesis|upregulation of F-9775B formation|positive regulation of F-9775B biosynthesis di 2012-05-22T04:27:01Z biological_process owl:Class GO:1900614 biolink:NamedThing F-9775B biosynthetic process The chemical reactions and pathways resulting in the formation of F-9775B. tmpzr1t_l9r_go_relaxed.owl F-9775B anabolism|F-9775B synthesis|F-9775B formation|F-9775B biosynthesis di 2012-05-15T07:03:32Z biological_process owl:Class GO:0061691 biolink:NamedThing detoxification of hydrogen peroxide Any process that reduces or removes the toxicity of hydrogen peroxide. These include transport of hydrogen peroxide away from sensitive areas and to compartments or complexes whose purpose is sequestration. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-05T12:42:18Z biological_process owl:Class GO:0042542 biolink:NamedThing response to hydrogen peroxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0012501 biolink:NamedThing programmed cell death A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. tmpzr1t_l9r_go_relaxed.owl regulated cell death|caspase-independent cell death|nonapoptotic programmed cell death|caspase-independent apoptosis|PCD|non-apoptotic programmed cell death|RCD Wikipedia:Programmed_cell_death Note that this term should be used to annotate gene products in the organism undergoing the programmed cell death. To annotate genes in another organism whose products modulate programmed cell death in a host organism, consider the term 'modulation by symbiont of host programmed cell death ; GO:0052040'. Also, note that 'programmed cell death ; GO:0012501' should be used to refer to instances of caspase-independent cell death mechanisms, in the absence of further indications on the process taking place. At present, caspase-independent cell death is not yet represented in GO due to the lack of consensus and in-depth research on the topic. 'programmed cell death ; GO:0012501' may also be used to annotate gene products in taxa where apoptosis as defined in GO:0006915 does not occur, such as plants. You may also consider these specific children: GO:0097468 'programmed cell death in response to reactive oxygen species' (with descendants GO:0010421 'hydrogen peroxide-mediated programmed cell death' and GO:0010343 'singlet oxygen-mediated programmed cell death'), and GO:0009626 'plant-type hypersensitive response' and its children. GO:0016244 biological_process owl:Class GO:0060879 biolink:NamedThing semicircular canal fusion Creation of the central hole of the semicircular canal by sealing the edges of the pouch that forms during the process of semicircular canal formation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T10:05:51Z biological_process owl:Class GO:0003714 biolink:NamedThing transcription corepressor activity A transcription coregulator activity that represses or decreases the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription corepressors modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription corepressor activity|RNA polymerase II transcription co-repressor activity|transcription co-repressor activity https://github.com/geneontology/go-ontology/issues/15665|https://github.com/geneontology/go-ontology/issues/20464|https://github.com/geneontology/go-ontology/issues/15998 For usage guidance, see comment in GO:0003712 ; transcription coregulator activity. krc 2010-11-24T03:14:44Z GO:0001106 molecular_function owl:Class GO:0045248 biolink:NamedThing cytosolic oxoglutarate dehydrogenase complex A cytosolic complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl See also the molecular functions term 'oxoglutarate dehydrogenase (succinyl-transferring) activity ; GO:0004591', 'dihydrolipoyllysine-residue succinyltransferase activity ; GO:0004149' and 'dihydrolipoyl dehydrogenase activity ; GO:0004148'. cellular_component owl:Class GO:0032815 biolink:NamedThing negative regulation of natural killer cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation. tmpzr1t_l9r_go_relaxed.owl downregulation of natural killer cell activation|inhibition of natural killer cell activation|negative regulation of NK cell activation|down regulation of natural killer cell activation|down-regulation of natural killer cell activation biological_process owl:Class GO:0030101 biolink:NamedThing natural killer cell activation The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl NK cell activation biological_process owl:Class GO:0072224 biolink:NamedThing metanephric glomerulus development The progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric glomerular development mah 2010-03-18T03:36:20Z biological_process owl:Class GO:0044214 biolink:NamedThing spanning component of plasma membrane The component of the plasma membrane consisting of gene products and protein complexes that have some part that spans both leaflets of the membrane. tmpzr1t_l9r_go_relaxed.owl fully spanning plasma membrane|transmembrane Proteins that span the membrane but have the bulk on one side of the membrane may be additionally annotated with a term of the form integral to X side of the plasma membrane. jl 2009-11-04T01:50:57Z cellular_component owl:Class GO:0005886 biolink:NamedThing plasma membrane The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. tmpzr1t_l9r_go_relaxed.owl inner endospore membrane|plasmalemma|cellular membrane|bacterial inner membrane|cell membrane|plasma membrane lipid bilayer|cytoplasmic membrane|juxtamembrane Wikipedia:Cell_membrane|NIF_Subcellular:sao1663586795 GO:0005904 cellular_component owl:Class GO:0031306 biolink:NamedThing intrinsic component of mitochondrial outer membrane The component of the mitochondrial outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to mitochondrial outer membrane cellular_component owl:Class GO:0005741 biolink:NamedThing mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl mitochondrion outer membrane|outer mitochondrion membrane|outer mitochondrial membrane Wikipedia:Outer_mitochondrial_membrane|NIF_Subcellular:sao1289741256 cellular_component owl:Class GO:0072049 biolink:NamedThing comma-shaped body morphogenesis The process in which the comma-shaped body is generated and organized. The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:44:48Z biological_process owl:Class GO:0072028 biolink:NamedThing nephron morphogenesis The process in which the anatomical structures of the nephron are generated and organized. A nephron is the functional unit of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:45:52Z biological_process owl:Class GO:0044106 biolink:NamedThing cellular amine metabolic process The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. tmpzr1t_l9r_go_relaxed.owl jl 2009-07-15T11:55:44Z biological_process owl:Class GO:0002362 biolink:NamedThing CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a CD4-positive, CD25-positive, alpha-beta regulatory T cell. tmpzr1t_l9r_go_relaxed.owl CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte lineage commitment|CD4-positive, CD25-positive, alpha-beta regulatory T-cell lineage commitment|CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte lineage commitment biological_process owl:Class GO:1900166 biolink:NamedThing regulation of glial cell-derived neurotrophic factor production Any process that modulates the frequency, rate or extent of glial cell-derived neurotrophic factor production. tmpzr1t_l9r_go_relaxed.owl regulation of GDNF secretion|regulation of glial cell line-derived neurotrophic factor secretion|regulation of glial cell-derived neurotrophic factor secretion yaf 2012-03-08T03:44:39Z biological_process owl:Class GO:0044467 biolink:NamedThing glial cell-derived neurotrophic factor production The regulated release of glial cell line-derived neurotrophic factor from a cell. Glial cell-derived neurotrophic factor (GDNF) is a small protein that potently promotes the survival of many types of neurons, notably dopaminergic and motor neurons. tmpzr1t_l9r_go_relaxed.owl glial cell line-derived neurotrophic factor production|GDNF production|glial cell-derived neurotrophic factor secretion jl 2012-01-17T04:26:05Z biological_process owl:Class GO:0010660 biolink:NamedThing regulation of muscle cell apoptotic process Any process that modulates the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl regulation of muscle cell apoptosis biological_process owl:Class GO:0010657 biolink:NamedThing muscle cell apoptotic process A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death. A muscle cell is a mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle. tmpzr1t_l9r_go_relaxed.owl muscle cell apoptosis biological_process owl:Class GO:0003041 biolink:NamedThing excitation of vasomotor center by carotid body chemoreceptor signaling The process in which the molecular signal from a carotid body is relayed to the vasomotor center, causing it to signal an increase arterial pressure. tmpzr1t_l9r_go_relaxed.owl excitation of vasomotor center by carotid body chemoreceptor signalling biological_process owl:Class GO:0003027 biolink:NamedThing regulation of systemic arterial blood pressure by carotid body chemoreceptor signaling The process that modulates blood pressure by the action of chemoreceptors found in the carotid bodies and their resultant modulation of the vasomotor center. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions. tmpzr1t_l9r_go_relaxed.owl regulation of systemic arterial blood pressure by carotid body chemoreceptor signalling|carotid body chemoreceptor regulation of systemic arterial blood pressure|vagal reflex|carotid body chemoreceptor response to lowering of systemic arterial blood pressure biological_process owl:Class GO:0006694 biolink:NamedThing steroid biosynthetic process The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. tmpzr1t_l9r_go_relaxed.owl steroid synthesis|steroid anabolism|steroid biosynthesis|steroidogenesis|steroid formation Wikipedia:Steroid_metabolisms#Steroid_biosynthesis biological_process owl:Class GO:0061050 biolink:NamedThing regulation of cell growth involved in cardiac muscle cell development Any process that modulates the rate, frequency, or extent of the growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T01:05:16Z biological_process owl:Class GO:0035483 biolink:NamedThing gastric emptying The process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:51:33Z biological_process owl:Class GO:0004862 biolink:NamedThing cAMP-dependent protein kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a cAMP-dependent protein kinase. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-180073 molecular_function owl:Class GO:0071613 biolink:NamedThing granzyme B production The appearance of granzyme B due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. mah 2010-02-05T04:47:15Z biological_process owl:Class GO:0001859 biolink:NamedThing complement component C3dg receptor activity Combining with the C3dg product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001853 biolink:NamedThing complement component C3dg binding Binding to a C3dg product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070197 biolink:NamedThing meiotic attachment of telomere to nuclear envelope The meiotic cell cycle process in which physical connections are formed between telomeric heterochromatin and the nuclear envelope, facilitating bouquet formation. tmpzr1t_l9r_go_relaxed.owl attachment of telomeric chromatin to nuclear envelope|attachment of telomeres to nuclear envelope https://github.com/geneontology/go-ontology/issues/22043 biological_process owl:Class GO:0044821 biolink:NamedThing meiotic telomere tethering at nuclear periphery The process in which a telomere is maintained in a specific location at the nuclear periphery, as part of a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-11-19T16:18:09Z biological_process owl:Class GO:0003289 biolink:NamedThing atrial septum primum morphogenesis The process in which anatomical structure of an atrial septum primum is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:32:32Z biological_process owl:Class GO:0003284 biolink:NamedThing septum primum development The progression of the septum primum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:12:26Z biological_process owl:Class GO:0055104 biolink:NamedThing ligase inhibitor activity Binds to and stops, prevents or reduces the activity of a ligase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000533 biolink:NamedThing negative regulation of renal albumin absorption Any process that stops, prevents or reduces the frequency, rate or extent of renal albumin absorption. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-24T03:28:11Z biological_process owl:Class GO:0097018 biolink:NamedThing renal albumin absorption A renal system process in which albumin is taken up from the collecting ducts, glomerulus and proximal and distal loops of the nephron. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-23T03:15:04Z biological_process owl:Class GO:1902989 biolink:NamedThing meiotic telomere maintenance via semi-conservative replication Any telomere maintenance via semi-conservative replication that is involved in meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl equal telomere replication involved in meiotic cell cycle|telomeric fork progression involved in meiotic cell cycle|telomeric replication fork progression involved in meiotic cell cycle jl 2014-05-08T11:13:43Z biological_process owl:Class GO:0075215 biolink:NamedThing modulation of spore encystment on host Any process that modulates the frequency, rate or extent of spore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075214 biolink:NamedThing spore encystment The physiological, developmental and morphological changes that occur in a symbiont spore during the process of its encystment. Encystment means to enter a state of essentially suspended animation in which the spore is protected by an outer coating and remains immobile and inactive until favorable conditions for growth occur again. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl spore encystment on host biological_process owl:Class GO:2000856 biolink:NamedThing negative regulation of mineralocorticoid secretion Any process that stops, prevents or reduces the frequency, rate or extent of mineralocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:46:42Z biological_process owl:Class GO:0035931 biolink:NamedThing mineralocorticoid secretion The regulated release of any mineralocorticoid into the circulatory system. Mineralocorticoids are a class of steroid hormones that regulate water and electrolyte metabolism. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:04:59Z biological_process owl:Class GO:0033182 biolink:NamedThing regulation of histone ubiquitination Any process that modulates the frequency, rate or extent of the addition of a ubiquitin group to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016574 biolink:NamedThing histone ubiquitination The modification of histones by addition of ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl histone ubiquitinylation|histone ubiquitylation biological_process owl:Class GO:1901224 biolink:NamedThing positive regulation of NIK/NF-kappaB signaling Any process that activates or increases the frequency, rate or extent of NIK/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl up-regulation of non-canonical NF-KB signaling|up-regulation of p52-dependent NF-kappaB signaling|release of NF-kappaB sequestered in cytoplasm|activation of p52-dependent NF-kappaB signaling|upregulation of p52-dependent NF-kappaB signaling|up-regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|up regulation of NIK/NF-kappaB cascade|upregulation of NIK/NF-kappaB cascade|release of cytoplasmic sequestered NF-kappaB|up-regulation of noncanonical NF-kappaB signaling|upregulation of non-canonical NF-KB signaling|positive regulation of noncanonical NF-kappaB signaling|upregulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|positive regulation of NIK/NF-kappaB cascade|up regulation of noncanonical NF-kappaB signaling|positive regulation of NF-kappaB import into nucleus|up regulation of non-canonical NF-KB signaling|negative regulation of cytoplasmic NF-kappaB storage|up regulation of p52-dependent NF-kappaB signaling|activation of non-canonical NF-KB signaling|positive regulation of non-canonical NF-KB signaling|up regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|activation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|up-regulation of NIK/NF-kappaB cascade|positive regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|positive regulation of p52-dependent NF-kappaB signaling|activation of NIK/NF-kappaB cascade|activation of noncanonical NF-kappaB signaling|upregulation of noncanonical NF-kappaB signaling hjd 2012-08-06T20:27:47Z GO:0008588|GO:0042346 biological_process owl:Class GO:0038061 biolink:NamedThing NIK/NF-kappaB signaling The process in which a signal is passed on to downstream components within the cell through the NIK-dependent processing and activation of NF-KappaB. Begins with activation of the NF-KappaB-inducing kinase (NIK), which in turn phosphorylates and activates IkappaB kinase alpha (IKKalpha). IKKalpha phosphorylates the NF-Kappa B2 protein (p100) leading to p100 processing and release of an active NF-KappaB (p52). tmpzr1t_l9r_go_relaxed.owl NIK/NF-kappaB cascade|noncanonical nuclear factor kappaB (NF-kappaB) pathway|non-canonical NF-KB signaling|noncanonical NF-kappaB signaling|p52-dependent NF-kappaB signaling|NIK/NF-kappaB signal transduction bf 2012-01-16T05:44:46Z biological_process owl:Class GO:2000860 biolink:NamedThing positive regulation of aldosterone secretion Any process that activates or increases the frequency, rate or extent of aldosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:47:34Z biological_process owl:Class GO:0035932 biolink:NamedThing aldosterone secretion The regulated release of aldosterone into the circulatory system. Aldosterone is a pregnane-based steroid hormone produced by the outer-section (zona glomerulosa) of the adrenal cortex in the adrenal gland, and acts on the distal tubules and collecting ducts of the kidney to cause the conservation of sodium, secretion of potassium, increased water retention, and increased blood pressure. The overall effect of aldosterone is to increase reabsorption of ions and water in the kidney. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:06:24Z biological_process owl:Class GO:0042042 biolink:NamedThing tungsten incorporation into tungsten-molybdopterin complex The incorporation of tungsten into a tungsten-molybdopterin complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900939 biolink:NamedThing negative regulation of (Z)-nonadeca-1,14-diene metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of (Z)-nonadeca-1,14-diene metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of (Z)-nonadeca-1,14-diene metabolic process|down-regulation of (Z)-nonadeca-1,14-diene metabolism|down regulation of (Z)-nonadeca-1,14-diene metabolism|inhibition of (Z)-nonadeca-1,14-diene metabolism|inhibition of (Z)-nonadeca-1,14-diene metabolic process|downregulation of (Z)-nonadeca-1,14-diene metabolism|downregulation of (Z)-nonadeca-1,14-diene metabolic process|negative regulation of (Z)-nonadeca-1,14-diene metabolism|down-regulation of (Z)-nonadeca-1,14-diene metabolic process tt 2012-06-14T03:15:58Z biological_process owl:Class GO:1900878 biolink:NamedThing (Z)-nonadeca-1,14-diene metabolic process The chemical reactions and pathways involving (Z)-nonadeca-1,14-diene. tmpzr1t_l9r_go_relaxed.owl (Z)-nonadeca-1,14-diene metabolism tt 2012-06-13T02:09:18Z biological_process owl:Class GO:1901433 biolink:NamedThing positive regulation of response to cycloalkane Any process that activates or increases the frequency, rate or extent of response to cycloalkane. tmpzr1t_l9r_go_relaxed.owl upregulation of response to cycloalkane|activation of response to cycloalkane|up-regulation of response to cycloalkane|up regulation of response to cycloalkane tt 2012-10-01T21:03:26Z biological_process owl:Class GO:0014071 biolink:NamedThing response to cycloalkane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloalkane stimulus. A cycloalkane is a cyclic saturated hydrocarbon having the general formula CnH2n. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000692 biolink:NamedThing negative regulation of seed maturation Any process that stops, prevents or reduces the frequency, rate or extent of seed maturation. tmpzr1t_l9r_go_relaxed.owl dhl 2011-05-13T06:41:43Z biological_process owl:Class GO:1902106 biolink:NamedThing negative regulation of leukocyte differentiation Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of immune cell differentiation|inhibition of immune cell differentiation|negative regulation of leucocyte differentiation|down-regulation of immune cell differentiation|down-regulation of leukocyte differentiation|down-regulation of leucocyte differentiation|downregulation of leucocyte differentiation|downregulation of leukocyte differentiation|down regulation of leukocyte differentiation|inhibition of leukocyte differentiation|down regulation of leucocyte differentiation|down regulation of immune cell differentiation|downregulation of immune cell differentiation|inhibition of leucocyte differentiation pr 2013-05-02T17:32:47Z biological_process owl:Class GO:0002521 biolink:NamedThing leukocyte differentiation The process in which a relatively unspecialized hemopoietic precursor cell acquires the specialized features of a leukocyte. A leukocyte is an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue. tmpzr1t_l9r_go_relaxed.owl leucocyte differentiation|immune cell differentiation biological_process owl:Class GO:0003372 biolink:NamedThing establishment or maintenance of cytoskeleton polarity involved in mesendodermal cell migration Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures that contribute to the cell polarity of a migrating mesendodermal cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:46:23Z biological_process owl:Class GO:0003369 biolink:NamedThing establishment of cell polarity involved in mesendodermal cell migration The specification and formation of anisotropic intracellular organization that contributes to the self-propelled directed movement of a mesendodermal cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:31:51Z biological_process owl:Class GO:0072044 biolink:NamedThing collecting duct development The process whose specific outcome is the progression of a collecting duct over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. It is the final common path through which urine flows before entering the ureter and then emptying into the bladder. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:18:06Z biological_process owl:Class GO:0001822 biolink:NamedThing kidney development The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl nephrogenesis Wikipedia:Kidney_development biological_process owl:Class GO:0038199 biolink:NamedThing ethylene receptor activity Combining with ethylene and transmitting the signal in the cell to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl C2H4 receptor activity|ethylene response sensor bf 2013-12-05T16:06:13Z molecular_function owl:Class GO:0016469 biolink:NamedThing proton-transporting two-sector ATPase complex A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible. tmpzr1t_l9r_go_relaxed.owl vacuolar hydrogen-transporting ATPase|hydrogen-transporting two-sector ATPase complex cellular_component owl:Class GO:0048800 biolink:NamedThing antennal morphogenesis The process in which the anatomical structures of the antenna are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007469 biolink:NamedThing antennal development The process whose specific outcome is the progression of the antenna over time, from its formation to the mature structure. The antenna are the sensory structures on the head that are capable of detecting various environmental stimuli. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071003 biolink:NamedThing penta-snRNP complex A ribonucleoprotein complex that is formed by the association of the U1, U2, U4/U6 and U5 small nuclear ribonucleoproteins. tmpzr1t_l9r_go_relaxed.owl penta-RNP complex mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005686 biolink:NamedThing U2 snRNP A ribonucleoprotein complex that contains small nuclear RNA U2, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U2 snRNP, most of which remain associated with the U2 snRNA both while the U2 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U2|17S U2 snRNP U2 snRNP refers to the U2 small nuclear RNA and the proteins that associate with it. U2 snRNP is not considered to be a type of spliceosomal complex by itself. cellular_component owl:Class GO:0030717 biolink:NamedThing oocyte karyosome formation The chromosome organization process in which meiotic chromosomes in the oocyte nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051299 biolink:NamedThing centrosome separation The process in which duplicated centrosome components move away from each other. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072114 biolink:NamedThing pronephros morphogenesis The process in which the anatomical structures of the pronephros are generated and organized. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life. tmpzr1t_l9r_go_relaxed.owl pronephric kidney morphogenesis mah 2010-02-22T11:12:15Z biological_process owl:Class GO:0007519 biolink:NamedThing skeletal muscle tissue development The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers. tmpzr1t_l9r_go_relaxed.owl myogenesis GO:0048637 biological_process owl:Class GO:0000262 biolink:NamedThing mitochondrial chromosome A chromosome found in the mitochondrion of a eukaryotic cell. tmpzr1t_l9r_go_relaxed.owl mitochondrial DNA|mtDNA|mitochondrial genome NIF_Subcellular:sao1186327184 cellular_component owl:Class GO:1903099 biolink:NamedThing positive regulation of CENP-A containing nucleosome assembly Any process that activates or increases the frequency, rate or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres. tmpzr1t_l9r_go_relaxed.owl activation of CenH3-containing nucleosome assembly at centromere|up regulation of centromere-specific histone exchange|upregulation of centromeric DNA replication-independent nucleosome assembly|upregulation of CENP-A containing nucleosome assembly at centromere|up-regulation of CENP-A containing nucleosome assembly at centromere|upregulation of CenH3-containing nucleosome assembly at centromere|up regulation of CenH3-containing nucleosome assembly at centromere|activation of CENP-A deposition|activation of centromere-specific histone exchange|up regulation of CENP-A deposition|up regulation of DNA replication-independent nucleosome assembly at centromere|up-regulation of centromeric DNA replication-independent nucleosome assembly|upregulation of centromere-specific nucleosome assembly|activation of centromere specific nucleosome exchange|upregulation of DNA replication-independent nucleosome assembly at centromere|positive regulation of DNA replication-independent nucleosome assembly at centromere|up-regulation of centromere specific nucleosome exchange|up regulation of centromere-specific nucleosome assembly|up-regulation of CENP-A deposition|positive regulation of centromeric DNA replication-independent nucleosome assembly|positive regulation of CENP-A loading|upregulation of centromere specific nucleosome exchange|up-regulation of CenH3-containing nucleosome assembly at centromere|positive regulation of centromere-specific nucleosome assembly|up-regulation of DNA replication-independent nucleosome assembly at centromere|upregulation of CENP-A loading|up regulation of centromere specific nucleosome exchange|positive regulation of CENP-A deposition|up regulation of CENP-A containing nucleosome assembly at centromere|activation of CENP-A loading|up regulation of CENP-A loading|positive regulation of centromere specific nucleosome exchange|upregulation of CENP-A deposition|activation of centromeric DNA replication-independent nucleosome assembly|upregulation of centromere-specific histone exchange|up-regulation of centromere-specific nucleosome assembly|up-regulation of centromere-specific histone exchange|activation of DNA replication-independent nucleosome assembly at centromere|up regulation of centromeric DNA replication-independent nucleosome assembly|activation of centromere-specific nucleosome assembly|positive regulation of CenH3-containing nucleosome assembly at centromere|activation of CENP-A containing nucleosome assembly at centromere|up-regulation of CENP-A loading|positive regulation of centromere-specific histone exchange vw 2014-06-03T16:15:42Z biological_process owl:Class GO:0032433 biolink:NamedThing filopodium tip The end of a filopodium distal to the body of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030175 biolink:NamedThing filopodium Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1046371754|Wikipedia:Filopodia A filopodium may be approximately 0.1 um wide, 5-10 um long, and up to 50 um long in axon growth cones; contain a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward. Note that filopodia on dendritic shafts are distinct from other types of filopodia (even those found in dendritic growth cones) and may react differently to stimuli, as shown in PMID:12904473. GO:0030028 cellular_component owl:Class GO:0045796 biolink:NamedThing negative regulation of intestinal cholesterol absorption Any process that stops, prevents, or reduces the frequency, rate or extent of uptake of cholesterol into the blood by absorption from the intestine. tmpzr1t_l9r_go_relaxed.owl inhibition of cholesterol absorption|down regulation of cholesterol absorption|down-regulation of cholesterol absorption|downregulation of cholesterol absorption biological_process owl:Class GO:0030299 biolink:NamedThing intestinal cholesterol absorption Uptake of cholesterol into the blood by absorption from the small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048557 biolink:NamedThing embryonic digestive tract morphogenesis The process in which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the anatomical structure through which food passes and is processed. tmpzr1t_l9r_go_relaxed.owl embryonic gut morphogenesis GO:0048558 biological_process owl:Class GO:0048546 biolink:NamedThing digestive tract morphogenesis The process in which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed. tmpzr1t_l9r_go_relaxed.owl gastrointestinal tract morphogenesis|digestive tube morphogenesis|gut morphogenesis|intestinal morphogenesis|alimentary canal morphogenesis GO:0048547 biological_process owl:Class GO:0055110 biolink:NamedThing involution involved in gastrulation with mouth forming second The inturning of an epithelial sheet over the basal surface of an outer layer involved in deuterostomic gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001702 biolink:NamedThing gastrulation with mouth forming second A gastrulation process in which the initial invagination becomes the anus and the mouth forms second. tmpzr1t_l9r_go_relaxed.owl deuterostomic gastrulation GO:0010003|GO:0048276 biological_process owl:Class GO:0006906 biolink:NamedThing vesicle fusion Fusion of the membrane of a transport vesicle with its target membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902547 biolink:NamedThing regulation of cellular response to vascular endothelial growth factor stimulus Any process that modulates the frequency, rate or extent of cellular response to vascular endothelial growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to VEGF|regulation of cellular response to VEGFA|regulation of cellular response to vascular endothelial growth factor|regulation of cellular response to VEGFB rl 2013-12-04T15:14:54Z biological_process owl:Class GO:0035924 biolink:NamedThing cellular response to vascular endothelial growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vascular endothelial growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to vascular endothelial growth factor|cellular response to VEGFB|cellular response to VEGF|cellular response to VEGFA bf 2011-07-15T04:03:29Z biological_process owl:Class GO:1990100 biolink:NamedThing DnaB-DnaC complex A protein complex containing homohexameric DNA helicase DnaB, and the DNA helicase loader DnaC. The helicase loader DnaC delivers DnaB to the chromosomal origin (oriC). tmpzr1t_l9r_go_relaxed.owl helicase-loading complex|DnaB6-DnaC6 complex|DnaB6-DnaC3 complex DnaB and DnaC may be present in different ratios in different forms of the DnaB-DnaC complex, including a DnaB6-DnaC3 complex active at the oriC, and a DnaB6-DnaC6 complex. bhm 2013-05-14T12:02:22Z cellular_component owl:Class GO:0036168 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to heat The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to an increase in temperature. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-27T03:53:28Z biological_process owl:Class GO:0072515 biolink:NamedThing trehalose transport in response to desiccation The directed movement of trehalose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore, that occurs as a result of a desiccation stimulus. A desiccation stimulus signals extreme dryness resulting from the prolonged deprivation of water. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-21T11:30:31Z biological_process owl:Class GO:0071465 biolink:NamedThing cellular response to desiccation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. tmpzr1t_l9r_go_relaxed.owl desiccation tolerance mah 2009-12-18T11:35:19Z biological_process owl:Class GO:0021667 biolink:NamedThing rhombomere 6 morphogenesis The process in which the anatomical structure of rhombomere 6 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021572 biolink:NamedThing rhombomere 6 development The process whose specific outcome is the progression of rhombomere 6 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021638 biolink:NamedThing trigeminal nerve formation The process that gives rise to the trigeminal nerve. This process pertains to the initial formation of a structure from unspecified parts. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae. tmpzr1t_l9r_go_relaxed.owl CN V biosynthesis|CN V formation biological_process owl:Class GO:0021636 biolink:NamedThing trigeminal nerve morphogenesis The process in which the anatomical structure of the trigeminal nerve is generated and organized. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae. tmpzr1t_l9r_go_relaxed.owl CN V morphogenesis biological_process owl:Class GO:1901191 biolink:NamedThing negative regulation of formation of translation initiation ternary complex Any process that stops, prevents or reduces the frequency, rate or extent of formation of translation initiation ternary complex. tmpzr1t_l9r_go_relaxed.owl down-regulation of translation initiation ternary complex assembly|inhibition of translation initiation ternary complex assembly|downregulation of formation of translation initiation ternary complex|negative regulation of translation initiation ternary complex assembly|down regulation of translation initiation ternary complex assembly|downregulation of translation initiation ternary complex assembly|down regulation of formation of translation initiation ternary complex|inhibition of formation of translation initiation ternary complex|down-regulation of formation of translation initiation ternary complex ss 2012-07-25T02:27:21Z biological_process owl:Class GO:0001677 biolink:NamedThing formation of translation initiation ternary complex Formation of a complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator). tmpzr1t_l9r_go_relaxed.owl translation initiation ternary complex assembly biological_process owl:Class GO:0097200 biolink:NamedThing cysteine-type endopeptidase activity involved in execution phase of apoptosis Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl effector caspase activity|executioner caspase activity Examples of gene products that may be annotated to this term include CASP3, CASP6 and CASP7, also called effector (or executioner) caspases. pr 2011-12-12T01:46:06Z molecular_function owl:Class GO:0003097 biolink:NamedThing renal water transport The directed movement of water (H2O) by the renal system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071585 biolink:NamedThing detoxification of cadmium ion Any process that reduces or removes the toxicity of cadmium ion. These may include transport of cadmium away from sensitive areas and to compartments or complexes whose purpose is sequestration of cadmium ion. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T03:38:48Z biological_process owl:Class GO:0003183 biolink:NamedThing mitral valve morphogenesis The process in which the structure of the mitral valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T12:02:01Z biological_process owl:Class GO:0003174 biolink:NamedThing mitral valve development The progression of the mitral valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:17:22Z biological_process owl:Class GO:0097222 biolink:NamedThing mitochondrial mRNA polyadenylation The enzymatic addition of a sequence of 40-60 adenylyl residues at the 3' end of a eukaryotic mitochondrial mRNA primary transcript. Mitochondria contain both stabilizing and destabilizing poly(A) tails. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-24T02:47:19Z biological_process owl:Class GO:0001583 biolink:NamedThing detection of chemical stimulus involved in sensory perception of salty taste The series of events required for a salty taste stimulus to be received and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of salty taste, detection of chemical stimulus|perception of salty taste, sensory transduction of chemical stimulus|sensory transduction of chemical stimulus during perception of salty taste|salty taste detection|sensory detection of salty taste|sensory detection of chemical stimulus during perception of salty taste|sensory transduction of salty taste biological_process owl:Class GO:0050914 biolink:NamedThing sensory perception of salty taste The series of events required to receive a salty taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl salty taste perception biological_process owl:Class GO:0061727 biolink:NamedThing methylglyoxal catabolic process to lactate The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into lactate. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-21T17:25:57Z biological_process owl:Class GO:0031096 biolink:NamedThing platelet dense tubular network lumen The volume enclosed by the membranes of the platelet dense tubular network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031094 biolink:NamedThing platelet dense tubular network A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061866 biolink:NamedThing negative regulation of histone H3-S10 phosphorylation Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to histone H3 on a serine residue at position 10. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-07T18:45:51Z biological_process owl:Class GO:0097314 biolink:NamedThing apoptosome assembly The aggregation, arrangement and bonding together of the apoptosome, a multisubunit protein complex involved in the signaling phase of the apoptotic process. tmpzr1t_l9r_go_relaxed.owl apoptosome formation pr 2012-05-28T03:39:49Z biological_process owl:Class GO:0002875 biolink:NamedThing negative regulation of chronic inflammatory response to antigenic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl inhibition of chronic inflammatory response to antigenic stimulus|downregulation of chronic inflammatory response to antigenic stimulus|down-regulation of chronic inflammatory response to antigenic stimulus|down regulation of chronic inflammatory response to antigenic stimulus biological_process owl:Class GO:0002439 biolink:NamedThing chronic inflammatory response to antigenic stimulus A chronic inflammatory response to an antigenic stimulus. A chronic inflammatory response persists indefinitely during days, weeks, or months in the life of an individual. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000447 biolink:NamedThing endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage at A2 biological_process owl:Class GO:0036519 biolink:NamedThing chemorepulsion of serotonergic neuron axon The process in which a serotonergic neuron growth cone is directed to a specific target site in response to a repulsive chemical cue. tmpzr1t_l9r_go_relaxed.owl chemorepulsion of 5-HT axon|chemorepulsion of serotonergic axon bf 2015-12-17T11:31:16Z biological_process owl:Class GO:0036515 biolink:NamedThing serotonergic neuron axon guidance The chemotaxis process that directs the migration of an axon growth cone of a serotonergic neuron to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl serotonergic axon guidance|5-HT axon guidance bf 2015-12-17T11:15:54Z biological_process owl:Class GO:0010738 biolink:NamedThing regulation of protein kinase A signaling Any process that modulates the rate, frequency, or extent of protein kinase A signaling. PKA signaling is the series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl regulation of protein kinase A signaling cascade|regulation of protein kinase A signalling cascade|regulation of PKA signaling cascade biological_process owl:Class GO:0010737 biolink:NamedThing protein kinase A signaling A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl PKA signaling cascade|protein kinase A signalling cascade|protein kinase A signal transduction|protein kinase A signaling cascade biological_process owl:Class GO:0060845 biolink:NamedThing venous endothelial cell fate commitment The commitment of a cell to a venous endothelial cell fate and its capacity to differentiate into an venous endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:51:23Z biological_process owl:Class GO:0005685 biolink:NamedThing U1 snRNP A ribonucleoprotein complex that contains small nuclear RNA U1, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U1 snRNP, most of which remain associated with the U1 snRNA both while the U1 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U1 cellular_component owl:Class GO:1900756 biolink:NamedThing protein processing in phagocytic vesicle Protein processing that takes place in the phagosome. Most protein processing in the phagosome represents protein degradation. tmpzr1t_l9r_go_relaxed.owl peptidolysis during protein maturation in phagosome|protein maturation by proteolysis in phagosome|protein processing in phagosome|protein maturation by peptide bond cleavage in phagosome|peptidolysis during protein maturation in phagocytic vesicle|protein maturation by proteolysis in phagocytic vesicle|protein maturation by peptide bond hydrolysis in phagosome|protein maturation by peptide bond hydrolysis in phagocytic vesicle|protein maturation by peptide bond cleavage in phagocytic vesicle rjd 2012-05-29T09:55:14Z biological_process owl:Class GO:0006935 biolink:NamedThing chemotaxis The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl taxis in response to chemical stimulus Wikipedia:Chemotaxis biological_process owl:Class GO:0033011 biolink:NamedThing perinuclear theca A condensed cytoplasmic structure that covers the nucleus of mammalian spermatozoa except for a narrow zone around the insertion of the tail. It shows two distinct regions, a subacrosomal layer and, continuing caudally beyond the acrosomic system, the postacrosomal sheath. The perinuclear theca has been considered a cytoskeletal scaffold responsible for maintaining the overall architecture of the mature sperm head; however, recent studies indicate that the bulk of its constituent proteins are not traditional cytoskeletal proteins but rather a variety of cytosolic proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0106135 biolink:NamedThing negative regulation of cardiac muscle cell contraction Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle cell contraction. tmpzr1t_l9r_go_relaxed.owl hjd 2018-07-26T16:10:17Z biological_process owl:Class GO:0086003 biolink:NamedThing cardiac muscle cell contraction The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:48:15Z biological_process owl:Class GO:0061444 biolink:NamedThing endocardial cushion cell development The process whose specific outcome is the progression of an endocardial cushion cell over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T09:07:46Z biological_process owl:Class GO:0061443 biolink:NamedThing endocardial cushion cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cushion cell. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T09:05:38Z biological_process owl:Class GO:1905073 biolink:NamedThing regulation of tight junction disassembly Any process that modulates the frequency, rate or extent of tight junction disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of occluding cell junction disassembly|regulation of occluding junction disassembly rl 2016-03-23T19:32:51Z biological_process owl:Class GO:1905071 biolink:NamedThing tight junction disassembly The disaggregation of an tight junction into its constituent components. tmpzr1t_l9r_go_relaxed.owl occluding junction disassembly|occluding cell junction disassembly rl 2016-03-23T12:35:08Z biological_process owl:Class GO:0010197 biolink:NamedThing polar nucleus fusion The merging of the polar nuclei, the two nuclei contained within the same cell that are created from the mitotic division of the megaspore during angiosperm reproduction. Polar nuclear fusion takes place in the ovule, forming in the fusion nucleus and giving rise to the endosperm when fertilized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009559 biolink:NamedThing embryo sac central cell differentiation The process in which the two uncellularized polar nuclei cellularize, fuse and acquire the specialized features of a mononucleate diploid central cell. tmpzr1t_l9r_go_relaxed.owl embryo sac endosperm mother cell differentiation|female gametophyte central cell differentiation biological_process owl:Class GO:1901145 biolink:NamedThing mesenchymal cell apoptotic process involved in nephron morphogenesis Any mesenchymal cell apoptotic process that is involved in nephron morphogenesis. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-13T01:43:51Z biological_process owl:Class GO:2000492 biolink:NamedThing regulation of interleukin-18-mediated signaling pathway Any process that modulates the frequency, rate or extent of interleukin-18-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-18-mediated signalling pathway pr 2011-03-16T01:59:18Z biological_process owl:Class GO:0035655 biolink:NamedThing interleukin-18-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-18 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-18-mediated signalling pathway bf 2011-01-26T09:55:57Z biological_process owl:Class GO:0070422 biolink:NamedThing G-protein beta/gamma-Raf-1 complex A protein complex formed by the association of the serine-threonine protein kinase Raf-1 with the beta and gamma subunits of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl G protein complex (GNG2, GNB2L1, RAF1) See also the cellular component term 'heterotrimeric G-protein complex ; GO:0005834'. cellular_component owl:Class GO:1902675 biolink:NamedThing left ventral basal body Any ciliary basal body that is part of a left ventral flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl ciliary basal body of left ventral cilium|cilial basal body of left ventral cilium|cilium basal body of left ventral flagellum|microtubule basal body of left ventral flagellum|cilium basal body of left ventral cilium|left ventral flagellum ciliary basal body|microtubule basal body of left ventral cilium|cilial basal body of left ventral flagellum|ciliary basal body of left ventral flagellum Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:54:54Z cellular_component owl:Class GO:0003187 biolink:NamedThing ventriculo bulbo valve morphogenesis The process in which the structure of the ventriculo bulbo valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T12:07:00Z biological_process owl:Class GO:0003173 biolink:NamedThing ventriculo bulbo valve development The progression of the ventriculo bulbo valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:16:25Z biological_process owl:Class GO:0070550 biolink:NamedThing rDNA condensation The process in which the chromatin structure of the rDNA repeats is compacted. In S. cerevisiae, condensation and resolution of the rDNA occurs during anaphase. tmpzr1t_l9r_go_relaxed.owl rDNA packaging biological_process owl:Class GO:1990700 biolink:NamedThing nucleolar chromatin organization Any process that results in the specification, formation or maintenance of the physical structure of nucleolar chromatin. tmpzr1t_l9r_go_relaxed.owl establishment or maintenance of nucleolar chromatin architecture|nucleolar chromatin organisation mah 2015-03-16T12:11:01Z biological_process owl:Class GO:0016070 biolink:NamedThing RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. tmpzr1t_l9r_go_relaxed.owl RNA metabolism biological_process owl:Class GO:0021854 biolink:NamedThing hypothalamus development The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905475 biolink:NamedThing regulation of protein localization to membrane Any process that modulates the frequency, rate or extent of protein localization to membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation in membrane|regulation of protein localization in membrane bc 2016-09-21T16:20:03Z biological_process owl:Class GO:0032911 biolink:NamedThing negative regulation of transforming growth factor beta1 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta1. tmpzr1t_l9r_go_relaxed.owl downregulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta1 production|negative regulation of TGF-B1 production|negative regulation of TGFB1 production|inhibition of transforming growth factor-beta1 production|down regulation of transforming growth factor-beta1 production|down-regulation of transforming growth factor-beta1 production biological_process owl:Class GO:0032905 biolink:NamedThing transforming growth factor beta1 production The appearance of transforming growth factor-beta1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl transforming growth factor-beta1 production|TGF-B1 production|TGFB1 production biological_process owl:Class GO:0060841 biolink:NamedThing venous blood vessel development The progression of the venous blood vessel over time from its initial formation to the mature structure. Venous blood vessels carry blood back to the heart after the capillary bed. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:14:07Z biological_process owl:Class GO:0031016 biolink:NamedThing pancreas development The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pancreas biological_process owl:Class GO:1903969 biolink:NamedThing regulation of response to macrophage colony-stimulating factor Any process that modulates the frequency, rate or extent of response to macrophage colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl regulation of response to macrophage colony-stimulating factor stimulus|regulation of response to M-CSF nc 2015-03-02T14:41:02Z biological_process owl:Class GO:0071959 biolink:NamedThing maintenance of mitotic sister chromatid cohesion, arms The process in which the association between sister chromatids of a replicated chromosome along the length of the chromosome arms, is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl maintenance of sister chromatin cohesion along arms at mitosis|maintenance of mitotic sister chromatin cohesion along arms mah 2011-06-01T04:08:43Z biological_process owl:Class GO:0071961 biolink:NamedThing mitotic sister chromatid cohesion, arms The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the chromosome arms during mitosis. tmpzr1t_l9r_go_relaxed.owl sister chromatid cohesion along arms at mitosis|mitotic sister chromatid cohesion along arms mah 2011-06-02T11:21:13Z biological_process owl:Class GO:0032043 biolink:NamedThing mitochondrial DNA catabolic process The chemical reactions and pathways resulting in the breakdown of mitochondrial DNA. tmpzr1t_l9r_go_relaxed.owl mitochondrial DNA breakdown|mtDNA catabolism|mitochondrial DNA degradation|mtDNA breakdown|mtDNA catabolic process|mitochondrial DNA catabolism|mtDNA degradation biological_process owl:Class GO:1903910 biolink:NamedThing negative regulation of receptor clustering Any process that stops, prevents or reduces the frequency, rate or extent of receptor clustering. tmpzr1t_l9r_go_relaxed.owl downregulation of receptor clustering|down-regulation of receptor clustering|inhibition of receptor clustering|down regulation of receptor clustering als 2015-02-09T10:56:42Z biological_process owl:Class GO:0042405 biolink:NamedThing nuclear inclusion body An intranuclear focus at which aggregated proteins have been sequestered. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031573 biolink:NamedThing mitotic intra-S DNA damage checkpoint signaling A mitotic cell cycle checkpoint that slows DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progression. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in intra-S DNA damage checkpoint|S-phase checkpoint|mitotic intra-S DNA damage checkpoint|intra-S DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072428 biological_process owl:Class GO:0000084 biolink:NamedThing mitotic S phase The cell cycle phase, following G1, during which DNA synthesis takes place as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl S phase of mitotic cell cycle|S-phase of mitotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1902676 biolink:NamedThing right ventral basal body Any ciliary basal body that is part of a right ventral flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl right ventral flagellum ciliary basal body|cilium basal body of right ventral flagellum|cilium basal body of right ventral cilium|cilial basal body of right ventral flagellum|ciliary basal body of right ventral flagellum|ciliary basal body of right ventral cilium|microtubule basal body of right ventral flagellum|cilial basal body of right ventral cilium|microtubule basal body of right ventral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:58:13Z cellular_component owl:Class GO:0097559 biolink:NamedThing right ventral flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right ventral basal body and exits the cell body proximally and dorsal to the ventral disc. tmpzr1t_l9r_go_relaxed.owl right ventral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:28:20Z cellular_component owl:Class GO:0060350 biolink:NamedThing endochondral bone morphogenesis The process in which bones are generated and organized as a result of the conversion of initial cartilaginous anlage into bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060671 biolink:NamedThing epithelial cell differentiation involved in embryonic placenta development The process in which a trophoblast cell acquires specialized features of an epithelial cell of the placental labyrinthine layer. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T11:40:52Z biological_process owl:Class GO:0098831 biolink:NamedThing presynaptic active zone cytoplasmic component A specialized region below the presynaptic membrane, characterized by electron-dense material, a specialized cytoskeletal matrix and accumulated (associated) synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl presynaptic zone cortex|cortex of presynaptic active zone cellular_component owl:Class GO:0048786 biolink:NamedThing presynaptic active zone A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix. tmpzr1t_l9r_go_relaxed.owl pre-synaptic active zone|presynaptic specialization|pre-synaptic active zone component NIF_Subcellular:sao792027222 cellular_component owl:Class GO:0021711 biolink:NamedThing cerebellar unipolar brush cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature unipolar brush cell in the cerebellum. Differentiation includes the processes involved in commitment of a neuroblast to a unipolar brush cell fate. A unipolar brush cell is a glutamatergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000821 biolink:NamedThing regulation of grooming behavior Any process that modulates the frequency, rate or extent of grooming behavior. tmpzr1t_l9r_go_relaxed.owl regulation of grooming behaviour rl 2011-07-14T04:48:12Z biological_process owl:Class GO:0007625 biolink:NamedThing grooming behavior The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites. tmpzr1t_l9r_go_relaxed.owl grooming behaviour biological_process owl:Class GO:2000721 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation Any positive regulation of transcription from RNA polymerase II promoter that is involved in smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of global transcription from Pol II promoter of smooth muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter, global of nonstriated muscle cell differentiation|activation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|positive regulation of global transcription from Pol II promoter of nonstriated muscle cell differentiation|positive regulation of transcription from Pol II promoter of nonstriated muscle cell differentiation|stimulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation|up-regulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation|up-regulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|up regulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter, global of smooth muscle cell differentiation|activation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|up regulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|up regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation|stimulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation|stimulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|positive regulation of transcription from Pol II promoter of smooth muscle cell differentiation|upregulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation|up regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|upregulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|positive regulation of gene-specific transcription from RNA polymerase II promoter of smooth muscle cell differentiation|up-regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation|stimulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|activation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation|activation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation|up-regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation|positive regulation of gene-specific transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation vk 2011-06-08T08:34:55Z biological_process owl:Class GO:0002723 biolink:NamedThing positive regulation of B cell cytokine production Any process that activates or increases the frequency, rate, or extent of B cell cytokine production. tmpzr1t_l9r_go_relaxed.owl activation of B cell cytokine production|positive regulation of B lymphocyte cytokine production|positive regulation of B-lymphocyte cytokine production|stimulation of B cell cytokine production|up-regulation of B cell cytokine production|positive regulation of B-cell cytokine production|up regulation of B cell cytokine production|upregulation of B cell cytokine production biological_process owl:Class GO:0002368 biolink:NamedThing B cell cytokine production Any process that contributes to cytokine production by a B cell. tmpzr1t_l9r_go_relaxed.owl B lymphocyte cytokine production|B-lymphocyte cytokine production|B-cell cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0072262 biolink:NamedThing metanephric glomerular mesangial cell proliferation involved in metanephros development The multiplication or reproduction of glomerular mesangial cells in the metanephros, resulting in the expansion of the population. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:27:27Z biological_process owl:Class GO:0015164 biolink:NamedThing glucuronoside transmembrane transporter activity Enables the transfer of a glucuronosides from one side of a membrane to the other. Glucuronosides are any compound formed by combination of glycosidic linkage of a hydroxy compound (e.g. an alcohol or a saccharide) with the anomeric carbon atom of glucuronate. tmpzr1t_l9r_go_relaxed.owl glucuronide transporter activity molecular_function owl:Class GO:0015779 biolink:NamedThing glucuronoside transport The directed movement of glucuronosides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucuronosides are any compound formed by combination of glycosidic linkage of a hydroxy compound (e.g. an alcohol or a saccharide) with the anomeric carbon atom of glucuronate. tmpzr1t_l9r_go_relaxed.owl glucuronide transport biological_process owl:Class GO:0072678 biolink:NamedThing T cell migration The movement of a T cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte migration|T lymphocyte migration|T-cell migration mah 2011-02-22T03:40:40Z biological_process owl:Class GO:0005993 biolink:NamedThing trehalose catabolic process The chemical reactions and pathways resulting in the breakdown of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. tmpzr1t_l9r_go_relaxed.owl mycose catabolic process|mycose catabolism|trehalose catabolism|trehalose degradation|mykose catabolic process|mykose catabolism|trehalose breakdown MetaCyc:TREDEGLOW-PWY biological_process owl:Class GO:0008627 biolink:NamedThing intrinsic apoptotic signaling pathway in response to osmotic stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to changes in intracellular ion homeostasis, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis by ionic changes biological_process owl:Class GO:0048935 biolink:NamedThing peripheral nervous system neuron development The process whose specific outcome is the progression of a neuron whose cell body is located in the peripheral nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048934 biolink:NamedThing peripheral nervous system neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098039 biolink:NamedThing replicative transposition, DNA-mediated Process of transposition in which the existing element is replicated and one of the copies is excised and integrated at a new target site. Also referred to as copy-and-paste transposition. tmpzr1t_l9r_go_relaxed.owl copy-and-paste transposition|transpositional DNA genome replication bm 2012-07-20T16:52:02Z biological_process owl:Class GO:0006973 biolink:NamedThing intracellular accumulation of glycerol The accumulation of glycerol within a cell, for example by increased glycerol biosynthesis combined with decreased permeability of the cell membrane to glycerol, in response to the detection of a hyperosmotic environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071474 biolink:NamedThing cellular hyperosmotic response Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. tmpzr1t_l9r_go_relaxed.owl cellular HOG response|cellular hypertonic response|cellular response to hypertonicity mah 2009-12-18T11:51:36Z biological_process owl:Class GO:0008649 biolink:NamedThing rRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031167 biolink:NamedThing rRNA methylation The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000278 biolink:NamedThing mitotic cell cycle Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. tmpzr1t_l9r_go_relaxed.owl mitosis Wikipedia:Mitosis Note that this term should not be confused with 'GO:0140014 ; mitotic nuclear division'. 'GO:0000278 ; mitotic cell cycle represents the entire mitotic cell cycle, while 'GO:0140014 ; mitotic nuclear division' specifically represents the actual nuclear division step of the mitotic cell cycle. GO:0007067 biological_process owl:Class GO:0003274 biolink:NamedThing endocardial cushion fusion The cell-cell adhesion process of mesenchymal cardiac cushion cells that contributes to the process of cushion shaping. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T09:26:32Z biological_process owl:Class GO:0003203 biolink:NamedThing endocardial cushion morphogenesis The process in which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:43:22Z biological_process owl:Class GO:0038056 biolink:NamedThing negative regulation of BMP signaling pathway by negative regulation of BMP secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the BMP signaling pathway by stopping, preventing or reducing the frequency, rate or extent of secretion of a member of the BMP family of proteins from the signaling cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of BMP signaling pathway by negative regulation of bone morphogenetic protein secretion|negative regulation of BMP signalling pathway by negative regulation of BMP secretion bf 2011-12-19T10:55:47Z biological_process owl:Class GO:0038055 biolink:NamedThing BMP secretion The controlled release of a member of the BMP family of proteins from a cell. tmpzr1t_l9r_go_relaxed.owl BMP protein secretion|bone morphogenetic protein secretion bf 2011-12-14T02:31:39Z biological_process owl:Class GO:0015607 biolink:NamedThing ABC-type fatty-acyl-CoA transporter activity Catalysis of the reaction ATP + H(2)O + fatty acyl CoA(Side 1) <=> ADP + phosphate + fatty acyl CoA(Side 2). A fatty acyl CoA group is any acyl group derived from a fatty acid with a coenzyme A group attached to it. tmpzr1t_l9r_go_relaxed.owl fatty acyl CoA transporter activity|ABC-type fatty-acyl-CoA transporter|ATPase-coupled fatty-acyl-CoA transmembrane transporter activity|fatty-acyl-CoA-transporting ATPase|fatty-acyl-CoA transmembrane transporter activity EC:7.6.2.4|RHEA:15181 molecular_function owl:Class GO:0031612 biolink:NamedThing cytosolic proteasome regulatory particle, base subcomplex The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex located in the cytosol of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031600 biolink:NamedThing cytosolic proteasome regulatory particle A multisubunit complex located in the cytosol of a cell, which caps one or both ends of the proteasome core complex. This complex recognizes, unfolds ubiquitinated proteins and translocates them to the proteasome core complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050321 biolink:NamedThing tau-protein kinase activity Catalysis of the reaction: ATP + tau-protein = ADP + O-phospho-tau-protein. tmpzr1t_l9r_go_relaxed.owl TPK|TTK|[Tau protein] kinase activity|glycogen synthase kinase-3beta activity|protein tau kinase activity|ATP:tau-protein O-phosphotransferase activity|GSK|tau kinase activity|tau protein kinase activity|STK31|tau-protein kinase I activity|cdk5/p20|tau-tubulin kinase activity|TPK I|TPK II|CDK5/p23|brain protein kinase PK40erk activity|tau-protein kinase II activity MetaCyc:TAU-PROTEIN-KINASE-RXN|EC:2.7.11.26 molecular_function owl:Class GO:1903679 biolink:NamedThing positive regulation of cap-independent translational initiation Any process that activates or increases the frequency, rate or extent of cap-independent translational initiation. tmpzr1t_l9r_go_relaxed.owl up regulation of cap-independent translational initiation|up-regulation of cap-independent translational initiation|upregulation of cap-independent translational initiation|activation of cap-independent translational initiation bf 2014-11-27T19:52:36Z biological_process owl:Class GO:0002190 biolink:NamedThing cap-independent translational initiation The process where translation initiation recruits the 40S ribosomal subunits in a Cap and 5' end independent fashion before an AUG codon is encountered in an appropriate sequence context to initiate mRNA or circRNA translation. tmpzr1t_l9r_go_relaxed.owl hjd 2011-08-11T02:16:05Z biological_process owl:Class GO:0000713 biolink:NamedThing meiotic heteroduplex formation During meiosis, the formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006310 biolink:NamedThing DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090254 biolink:NamedThing cell elongation involved in imaginal disc-derived wing morphogenesis The process in which a cell elongates and contributes to imaginal disc-derived wing morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:40:46Z biological_process owl:Class GO:0030089 biolink:NamedThing phycobilisome Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phycobilisome cellular_component owl:Class GO:0002138 biolink:NamedThing retinoic acid biosynthetic process The chemical reactions and pathways resulting in the biosynthesis of retinoic acid, one of the three components that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl retinoic acid anabolic process hjd 2009-05-01T10:53:24Z biological_process owl:Class GO:1904354 biolink:NamedThing negative regulation of telomere capping Any process that stops, prevents or reduces the frequency, rate or extent of telomere capping. tmpzr1t_l9r_go_relaxed.owl negative regulation of telomere end protection|down-regulation of telomere capping|downregulation of telomere end protection|inhibition of telomere end protection|down regulation of telomere end protection|down regulation of telomere capping|inhibition of telomere capping|down-regulation of telomere end protection|downregulation of telomere capping nc 2015-06-12T16:51:14Z biological_process owl:Class GO:0016233 biolink:NamedThing telomere capping A process in which telomeres are protected from degradation and fusion, thereby ensuring chromosome stability by protecting the ends from both degradation and from being recognized as damaged DNA. May be mediated by specific single- or double-stranded telomeric DNA binding proteins. tmpzr1t_l9r_go_relaxed.owl telomere end protection biological_process owl:Class GO:1900091 biolink:NamedThing regulation of raffinose biosynthetic process Any process that modulates the frequency, rate or extent of raffinose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of raffinose biosynthesis|regulation of raffinose formation|regulation of raffinose synthesis|regulation of raffinose anabolism dhl 2012-02-08T06:31:54Z biological_process owl:Class GO:0033529 biolink:NamedThing raffinose biosynthetic process The chemical reactions and pathways resulting in the formation of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl raffinose formation|raffinose synthesis|raffinose anabolism|raffinose biosynthesis biological_process owl:Class GO:0061285 biolink:NamedThing mesonephric capsule development The progression of the mesonephric capsule over time, from its formation to the mature structure. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:50:06Z biological_process owl:Class GO:0001823 biolink:NamedThing mesonephros development The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney. tmpzr1t_l9r_go_relaxed.owl Wolffian body development biological_process owl:Class GO:0061343 biolink:NamedThing cell adhesion involved in heart morphogenesis The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T11:34:06Z biological_process owl:Class GO:0003007 biolink:NamedThing heart morphogenesis The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. tmpzr1t_l9r_go_relaxed.owl cardiac morphogenesis biological_process owl:Class GO:1905909 biolink:NamedThing regulation of dauer entry Any process that modulates the frequency, rate or extent of dauer entry. tmpzr1t_l9r_go_relaxed.owl regulation of nematode entry into dormancy hbye 2017-02-06T15:34:01Z biological_process owl:Class GO:0043053 biolink:NamedThing dauer entry Entry into the facultative diapause of the dauer (enduring) larval stage of nematode development. tmpzr1t_l9r_go_relaxed.owl nematode entry into dormancy biological_process owl:Class GO:2001033 biolink:NamedThing negative regulation of double-strand break repair via nonhomologous end joining Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair via nonhomologous end joining. tmpzr1t_l9r_go_relaxed.owl negative regulation of NHEJ yaf 2011-08-24T09:25:46Z biological_process owl:Class GO:2000604 biolink:NamedThing negative regulation of secondary growth Any process that stops, prevents or reduces the frequency, rate or extent of secondary growth. tmpzr1t_l9r_go_relaxed.owl tb 2011-04-15T10:30:47Z biological_process owl:Class GO:0080117 biolink:NamedThing secondary growth Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium. tmpzr1t_l9r_go_relaxed.owl cambial secondary growth Occurs in vascular plants, including gymnosperms and most dicotyledons. Commonly supplemented by activity of the cork cambium or phellogen (PO:0005599). Monocotyledons do not have secondary growth, but may undergo primary thickening (GO:0080192) or secondary thickening (GO:0080191), which can give the appearance of secondary growth. Primary and secondary growth can occur simultaneously in the same organism. dhl 2009-04-27T03:36:28Z biological_process owl:Class GO:1900238 biolink:NamedThing regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway Any process that modulates the frequency, rate or extent of regulation of metanephric mesenchymal cell migration, by platelet-derived growth factor receptor-beta signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of metanephric mesenchyme chemotaxis by platelet-derived growth factor receptor-beta signaling pathway|regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signalling pathway yaf 2012-03-27T03:33:56Z biological_process owl:Class GO:0035789 biolink:NamedThing metanephric mesenchymal cell migration The orderly movement of undifferentiated metanephric mesenchymal cells (precursors to metanephric mesangial cells) from the mesenchyme into the cleft of the developing glomerulus, during development of the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric mesenchyme chemotaxis bf 2011-04-06T10:45:15Z biological_process owl:Class GO:1990053 biolink:NamedThing DNA-5-methylcytosine glycosylase activity Catalysis of the reaction: DNA containing 5-methylcytosine + H2O = DNA with abasic site + 5-methylcytosine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the DNA 5-methylcytosine and the deoxyribose sugar to remove the 5-methylcytosine, leaving an abasic site. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-22T01:09:06Z molecular_function owl:Class GO:0021943 biolink:NamedThing formation of radial glial scaffolds The formation of scaffolds from a radial glial cell. The scaffolds are used as a substrate for the radial migration of cells. tmpzr1t_l9r_go_relaxed.owl Bergmann fiber formation|Bergmann fiber biosynthesis biological_process owl:Class GO:0031569 biolink:NamedThing mitotic G2 cell size control checkpoint signaling A signal transduction process that contributes to a cell size control checkpoint prior to the G2/M transition of mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle G2/M transition size control checkpoint|G2 cell size control checkpoint|signal transduction involved in mitotic cell cycle G2/M transition size control checkpoint|mitotic G2 cell size control checkpoint|signal transduction involved in G2/M transition size control checkpoint|signal transduction involved in G2 cell size control checkpoint|G2/M transition size control checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072453 biological_process owl:Class GO:0051319 biolink:NamedThing G2 phase The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation (usually by mitosis or meiosis). tmpzr1t_l9r_go_relaxed.owl Wikipedia:G2_phase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1990422 biolink:NamedThing glyoxalase (glycolic acid-forming) activity Catalysis of the reaction: glyoxal + H2O = glycolic acid. Catalysis occurs in the absence of a cofactor. tmpzr1t_l9r_go_relaxed.owl bf 2014-07-21T09:00:21Z molecular_function owl:Class GO:1903190 biolink:NamedThing glyoxal catabolic process The chemical reactions and pathways resulting in the breakdown of glyoxal. tmpzr1t_l9r_go_relaxed.owl glyoxal degradation|glyoxal breakdown|glyoxal catabolism bf 2014-07-15T10:11:51Z biological_process owl:Class GO:0001881 biolink:NamedThing receptor recycling The process that results in the return of receptor molecules to an active state and an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006897 biolink:NamedThing endocytosis A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. tmpzr1t_l9r_go_relaxed.owl nonselective vesicle endocytosis|endocytic import into cell|vesicle endocytosis|plasma membrane invagination Wikipedia:Endocytosis GO:0016196|GO:0016193|GO:0098701 biological_process owl:Class GO:1901726 biolink:NamedThing negative regulation of histone deacetylase activity Any process that stops, prevents or reduces the frequency, rate or extent of histone deacetylase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of histone deacetylase activity|down-regulation of histone deacetylase activity|inhibition of histone deacetylase activity|down regulation of histone deacetylase activity rl 2013-01-07T09:14:17Z biological_process owl:Class GO:1901421 biolink:NamedThing positive regulation of response to alcohol Any process that activates or increases the frequency, rate or extent of response to alcohol. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to alcohol|up regulation of response to alcohol|upregulation of response to alcohol|activation of response to alcohol tt 2012-10-01T16:53:42Z biological_process owl:Class GO:0035844 biolink:NamedThing cloaca development The process whose specific outcome is the progression of the cloaca over time, from it's formation to the mature structure. The cloaca is the common chamber into which intestinal, genital and urinary canals open in vertebrates. tmpzr1t_l9r_go_relaxed.owl cloacal development bf 2011-05-06T01:54:35Z biological_process owl:Class GO:1903464 biolink:NamedThing negative regulation of mitotic cell cycle DNA replication Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl negative regulation of DNA replication involved in S phase involved in mitotic cell cycle|downregulation of mitotic nuclear cell cycle DNA replication|downregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|inhibition of mitotic nuclear cell cycle DNA replication|down regulation of DNA replication during S phase involved in mitotic cell cycle|down regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|inhibition of DNA replication during S phase involved in mitotic cell cycle|down regulation of mitotic nuclear cell cycle DNA replication|negative regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|down-regulation of DNA replication involved in S phase involved in mitotic cell cycle|down-regulation of mitotic cell cycle DNA replication|negative regulation of DNA replication involved in S-phase involved in mitotic cell cycle|down regulation of mitotic cell cycle DNA replication|downregulation of DNA replication involved in S phase involved in mitotic cell cycle|downregulation of DNA replication involved in S-phase involved in mitotic cell cycle|negative regulation of mitotic nuclear cell cycle DNA replication|down-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle|inhibition of mitotic cell cycle DNA replication|down-regulation of mitotic nuclear cell cycle DNA replication|down regulation of DNA replication involved in S-phase involved in mitotic cell cycle|inhibition of DNA replication involved in S phase involved in mitotic cell cycle|down-regulation of DNA replication during S phase involved in mitotic cell cycle|inhibition of DNA replication involved in S-phase involved in mitotic cell cycle|downregulation of mitotic cell cycle DNA replication|downregulation of DNA replication during S phase involved in mitotic cell cycle|negative regulation of DNA replication during S phase involved in mitotic cell cycle|down regulation of DNA replication involved in S phase involved in mitotic cell cycle|down-regulation of DNA replication involved in S-phase involved in mitotic cell cycle|inhibition of nuclear cell cycle DNA replication involved in mitotic cell cycle vw 2014-09-23T13:38:33Z biological_process owl:Class GO:1902969 biolink:NamedThing mitotic DNA replication Any nuclear DNA replication that is involved in a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl DNA replication involved in S-phase involved in mitotic cell cycle|mitotic cell cycle DNA replication|nuclear cell cycle DNA replication involved in mitotic cell cycle|mitotic nuclear cell cycle DNA replication|DNA replication during S phase involved in mitotic cell cycle|DNA replication involved in S phase involved in mitotic cell cycle jl 2014-05-06T15:03:03Z biological_process owl:Class GO:0007377 biolink:NamedThing germ-band extension Elongation of the germ band on the ventral side of the embryo, accompanied by a halving in width. The elongation process pushes the posterior midgut invagination closed and compresses the amnioserosa further. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010004 biolink:NamedThing gastrulation involving germ band extension A complex and coordinated series of cellular movements, including germ band extension, that occurs at the end of cleavage during embryonic development. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003899 biolink:NamedThing DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase I activity|DNA-dependent RNA polymerase activity|RNA nucleotidyltransferase (DNA-directed) activity|DNA-dependent RNA nucleotidyltransferase activity|DNA-directed RNA polymerase activity|RNA polymerase III activity|deoxyribonucleic acid-dependent ribonucleic acid polymerase activity|transcriptase|DNA-dependent ribonucleate nucleotidyltransferase activity|RNA polymerase II activity|DNA-directed RNA polymerase II activity|C RNA formation factors|RNA polymerase I activity|nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed) activity|DNA-directed RNA polymerase III activity|C ribonucleic acid formation factors Reactome:R-HSA-167115|Reactome:R-HSA-427366|Reactome:R-HSA-6781824|Reactome:R-HSA-75869|Reactome:R-HSA-5601926|Reactome:R-HSA-9697084|Reactome:R-HSA-167121|Reactome:R-HSA-203901|Reactome:R-HSA-75850|Reactome:R-HSA-75873|Reactome:R-HSA-167136|Reactome:R-HSA-111264|Reactome:R-HSA-76576|Reactome:R-HSA-9697085|MetaCyc:DNA-DIRECTED-RNA-POLYMERASE-RXN|EC:2.7.7.6|Reactome:R-HSA-174425|Reactome:R-HSA-68913|Reactome:R-HSA-167117|Reactome:R-HSA-167113|Reactome:R-HSA-9670149|Reactome:R-HSA-74986 GO:0000129 molecular_function owl:Class GO:0014896 biolink:NamedThing muscle hypertrophy The muscle system process that results in enlargement or overgrowth of all or part of a muscle organ due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development (it stops in cardiac muscle after adolescence) and can also be brought on in response to demand. In athletes cardiac and skeletal muscles undergo hypertrophy stimulated by increasing muscle activity on exercise. Smooth muscle cells in the uterus undergo hypertrophy during pregnancy. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Muscle_hypertrophy biological_process owl:Class GO:1901089 biolink:NamedThing acetate ester metabolic process involved in fermentation Any acetate ester metabolic process that is involved in fermentation. tmpzr1t_l9r_go_relaxed.owl acetate ester metabolic process during fermentation rb 2012-07-05T11:47:17Z biological_process owl:Class GO:0006113 biolink:NamedThing fermentation The anaerobic enzymatic conversion of organic compounds, especially carbohydrates, coupling the oxidation and reduction of NAD/H and the generation of adenosine triphosphate (ATP). tmpzr1t_l9r_go_relaxed.owl MetaCyc:FERMENTATION-PWY|Wikipedia:Fermentation_(biochemistry) biological_process owl:Class GO:0032712 biolink:NamedThing negative regulation of interleukin-3 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-3 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-3 production|downregulation of interleukin-3 production|inhibition of interleukin-3 production|negative regulation of interleukin-3 biosynthetic process|negative regulation of IL-3 production|down-regulation of interleukin-3 production GO:0045400 biological_process owl:Class GO:0032632 biolink:NamedThing interleukin-3 production The appearance of interleukin-3 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-3 biosynthetic process|IL-3 production|interleukin-3 secretion GO:0072601|GO:0042223 biological_process owl:Class GO:0006360 biolink:NamedThing transcription by RNA polymerase I The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor activity|transcription from RNA polymerase I promoter|transcription from Pol I promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0090070 biolink:NamedThing positive regulation of ribosome biogenesis Any process that increases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T10:32:17Z biological_process owl:Class GO:0042254 biolink:NamedThing ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. tmpzr1t_l9r_go_relaxed.owl ribosome biogenesis and assembly GO:0007046 biological_process owl:Class GO:0060446 biolink:NamedThing branching involved in open tracheal system development The process in which the anatomical structures of branches in the open tracheal system are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007424 biolink:NamedThing open tracheal system development The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'tracheal system ; FBbt:00005024'. biological_process owl:Class GO:0033112 biolink:NamedThing cyanelle envelope The double lipid bilayer enclosing the cyanelle and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009842 biolink:NamedThing cyanelle A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a double membrane with a peptidoglycan layer in the intermembrane space between the two envelope membranes. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid. tmpzr1t_l9r_go_relaxed.owl cyanoplast|muroplast cellular_component owl:Class GO:1903045 biolink:NamedThing neural crest cell migration involved in sympathetic nervous system development Any neural crest cell migration that is involved in sympathetic nervous system development. tmpzr1t_l9r_go_relaxed.owl Sema3a (O08665, mouse) is involved in neural crest cell migration involved in sympathetic nervous system development rl 2014-05-22T07:06:02Z biological_process owl:Class GO:0048485 biolink:NamedThing sympathetic nervous system development The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045005 biolink:NamedThing DNA-dependent DNA replication maintenance of fidelity A DNA metabolic process that prevents or corrects errors to ensure that DNA is replicated accurately. Errors can be corrected either by intrinsic DNA polymerase proofreading activity or via mismatch repair. tmpzr1t_l9r_go_relaxed.owl maintenance of fidelity involved in DNA-dependent DNA replication|maintenance of fidelity during DNA-dependent DNA replication biological_process owl:Class GO:0006261 biolink:NamedThing DNA-dependent DNA replication A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. tmpzr1t_l9r_go_relaxed.owl GO:0006262|GO:0006263 biological_process owl:Class GO:1900077 biolink:NamedThing negative regulation of cellular response to insulin stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to insulin stimulus|downregulation of cellular response to insulin stimulus|down regulation of cellular response to insulin stimulus|inhibition of cellular response to insulin stimulus yaf 2012-01-31T11:23:15Z biological_process owl:Class GO:0098896 biolink:NamedThing postsynaptic early endosome membrane The lipid bilayer surrounding a postsynaptic early endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000022 biolink:NamedThing mitotic spindle elongation The cell cycle process in which the distance is lengthened between poles of the mitotic spindle. Mitotic spindle elongation begins during mitotic prophase and ends during mitotic anaphase B. tmpzr1t_l9r_go_relaxed.owl spindle elongation during mitosis|microtubule sliding involved in mitotic spindle elongation pr 2016-04-08T15:06:14Z GO:1905121 biological_process owl:Class GO:0000070 biolink:NamedThing mitotic sister chromatid segregation The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets. tmpzr1t_l9r_go_relaxed.owl mitotic sister-chromatid adhesion release|mitotic chromosome segregation GO:0016359 biological_process owl:Class GO:0015085 biolink:NamedThing calcium ion transmembrane transporter activity Enables the transfer of calcium (Ca) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2534359 molecular_function owl:Class GO:0097204 biolink:NamedThing phagocytic cup base The older part of the phagocytic cup where the actin cytoskeleton disassembles, allowing early incoming and outgoing vesicular trafficking. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-21T10:29:07Z cellular_component owl:Class GO:0001891 biolink:NamedThing phagocytic cup An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033096 biolink:NamedThing amyloplast envelope The double lipid bilayer enclosing the amyloplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009501 biolink:NamedThing amyloplast A plastid whose main function is to synthesize and store starch. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Amyloplast cellular_component owl:Class GO:1900434 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to starvation Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:54:46Z biological_process owl:Class GO:0036170 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to starvation The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-27T03:53:28Z biological_process owl:Class GO:0072019 biolink:NamedThing proximal convoluted tubule development The process whose specific outcome is the progression of the proximal convoluted tubule over time, from its formation to the mature structure. The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:35:35Z biological_process owl:Class GO:0072014 biolink:NamedThing proximal tubule development The process whose specific outcome is the progression of the proximal tubule over time, from its formation to the mature structure. In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle. It has a brush border epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:33:46Z biological_process owl:Class GO:0002842 biolink:NamedThing positive regulation of T cell mediated immune response to tumor cell Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl stimulation of T cell mediated immune response to tumor cell|positive regulation of T lymphocyte mediated immune response to tumor cell|positive regulation of T-lymphocyte mediated immune response to tumor cell|activation of T cell mediated immune response to tumor cell|upregulation of T cell mediated immune response to tumor cell|positive regulation of T-cell mediated immune response to tumor cell|up regulation of T cell mediated immune response to tumor cell|up-regulation of T cell mediated immune response to tumor cell|positive regulation of T cell mediated immune response to tumour cell biological_process owl:Class GO:0002424 biolink:NamedThing T cell mediated immune response to tumor cell An immune response mediated by a T cell triggered in response to the presence of a tumor cell. tmpzr1t_l9r_go_relaxed.owl Note that this term includes tolerogenic responses to tumor cells mediated by responding T cells. biological_process owl:Class GO:0001174 biolink:NamedThing transcriptional start site selection at RNA polymerase II promoter Any process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript. tmpzr1t_l9r_go_relaxed.owl krc 2011-06-20T01:35:28Z biological_process owl:Class GO:1900313 biolink:NamedThing negative regulation of maltohexaose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltohexaose transport. tmpzr1t_l9r_go_relaxed.owl down regulation of maltohexaose transport|down-regulation of maltohexaose transport|downregulation of maltohexaose transport|inhibition of maltohexaose transport tt 2012-04-05T07:59:26Z biological_process owl:Class GO:2001103 biolink:NamedThing maltohexaose transport The directed movement of a maltohexaoseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:21:40Z biological_process owl:Class GO:0006931 biolink:NamedThing substrate-dependent cell migration, cell attachment to substrate The formation of adhesions that stabilize protrusions at the leading edge of a migrating cell; involves integrin activation, clustering, and the recruitment of structural and signaling components to nascent adhesions. tmpzr1t_l9r_go_relaxed.owl substrate-bound cell migration, cell attachment to substrate biological_process owl:Class GO:0006929 biolink:NamedThing substrate-dependent cell migration The orderly movement of a cell from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate. tmpzr1t_l9r_go_relaxed.owl substrate-bound cell migration biological_process owl:Class GO:1904007 biolink:NamedThing positive regulation of phospholipase D activity Any process that activates or increases the frequency, rate or extent of phospholipase D activity. tmpzr1t_l9r_go_relaxed.owl up regulation of choline phosphatase activity|up-regulation of phosphatidylcholine phosphatidohydrolase activity|up-regulation of phospholipase D activity|up regulation of phosphatidylcholine phosphatidohydrolase activity|activation of choline phosphatase activity|up-regulation of lecithinase D activity|positive regulation of lipophosphodiesterase II activity|up regulation of lecithinase D activity|upregulation of lecithinase D activity|activation of lecithinase D activity|activation of phospholipase D activity|up regulation of phospholipase D activity|positive regulation of choline phosphatase activity|up regulation of lipophosphodiesterase II activity|activation of phosphatidylcholine phosphatidohydrolase activity|positive regulation of phosphatidylcholine phosphatidohydrolase activity|up-regulation of lipophosphodiesterase II activity|up-regulation of choline phosphatase activity|upregulation of phosphatidylcholine phosphatidohydrolase activity|positive regulation of lecithinase D activity|upregulation of choline phosphatase activity|upregulation of phospholipase D activity|upregulation of lipophosphodiesterase II activity|activation of lipophosphodiesterase II activity sl 2015-03-06T17:20:17Z biological_process owl:Class GO:0004630 biolink:NamedThing phospholipase D activity Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. tmpzr1t_l9r_go_relaxed.owl lecithinase D activity|choline phosphatase activity|phosphatidylcholine phosphatidohydrolase activity|lipophosphodiesterase II activity MetaCyc:PHOSCHOL-RXN|RHEA:14445|Reactome:R-HSA-1483142|EC:3.1.4.4|Reactome:R-HSA-1483182|Reactome:R-HSA-2029471 molecular_function owl:Class GO:0071663 biolink:NamedThing positive regulation of granzyme B production Any process that activates or increases the frequency, rate, or extent of production of granzyme B. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0048898 biolink:NamedThing anterior lateral line system development The process whose specific outcome is the progression of the anterior lateral line system over time, from its formation to the mature structure. The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. tmpzr1t_l9r_go_relaxed.owl ALL system development biological_process owl:Class GO:0048881 biolink:NamedThing mechanosensory lateral line system development The process whose specific outcome is the progression of the mechanosensory lateral line system over time, from its formation to the mature structure. The mechanosensory lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. tmpzr1t_l9r_go_relaxed.owl LL system development biological_process owl:Class GO:2000657 biolink:NamedThing negative regulation of apolipoprotein binding Any process that stops, prevents or reduces the frequency, rate or extent of apolipoprotein binding. tmpzr1t_l9r_go_relaxed.owl vk 2011-05-02T05:33:44Z biological_process owl:Class GO:0034185 biolink:NamedThing apolipoprotein binding Binding to an apolipoprotein, the protein component of a lipoprotein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000325 biolink:NamedThing plant-type vacuole A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl vacuole, cell cycle-independent morphology cellular_component owl:Class GO:0075713 biolink:NamedThing establishment of integrated proviral latency A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage. tmpzr1t_l9r_go_relaxed.owl prophage integration|provirus integration VZ:980 jl 2009-05-07T02:28:41Z GO:0019047 biological_process owl:Class GO:0044826 biolink:NamedThing viral genome integration into host DNA The insertion into a host genome of viral DNA, usually by the action of an integrase enzyme. Once integrated, the provirus persists in the host cell and serves as a template for the transcription of viral genes and replication of the viral genome, leading to the production of new viruses. tmpzr1t_l9r_go_relaxed.owl viral genome integration jl 2014-02-04T16:58:43Z biological_process owl:Class GO:0099403 biolink:NamedThing maintenance of mitotic sister chromatid cohesion, telomeric The process in which the association between sister chromatids of a replicated chromosome along the length of the telomeric region is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl maintenance of sister chromatin cohesion at telomere at mitosis|maintenance of telomeric mitotic sister chromatin cohesion|maintenance of mitotic sister chromatin cohesion at telomere biological_process owl:Class GO:0001837 biolink:NamedThing epithelial to mesenchymal transition A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl mesenchymal cell differentiation from epithelial cell|EMT|epithelial-mesenchymal transition biological_process owl:Class GO:1901901 biolink:NamedThing regulation of protein localization to cell division site involved in cytokinesis Any regulation of protein localization to cell division site that is involved in cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to cell division site involved in cytokinesis dph 2013-02-12T18:01:34Z biological_process owl:Class GO:1902388 biolink:NamedThing ceramide 1-phosphate transfer activity Removes a ceramide 1-phosphate from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl ceramide 1-phosphate carrier activity|ceramide 1-phosphate transporter activity|intermembrane ceramide 1-phosphate transfer activity Reactome:R-HSA-5339535 uh 2013-09-05T05:57:55Z molecular_function owl:Class GO:1902389 biolink:NamedThing ceramide 1-phosphate transport The directed movement of a ceramide 1-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl uh 2013-09-05T06:02:35Z biological_process owl:Class GO:0042676 biolink:NamedThing compound eye cone cell fate commitment The process in which the cone cells of the compound eye, the lens-secreting cells in the ommatidia, adopt pathways of differentiation that lead to the establishment of their distinct cell type. tmpzr1t_l9r_go_relaxed.owl GO:0007466 biological_process owl:Class GO:0075264 biolink:NamedThing regulation of oogonium development Any process that modulates the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075263 biolink:NamedThing oogonium development The process that leads to the development of an oogonium, a female gametangium of Oomycetes, containing one or more gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001839 biolink:NamedThing neural plate morphogenesis The process in which the anatomical structures of the neural plate are generated and organized. The neural plate is a specialized region of columnar epithelial cells in the dorsal ectoderm that will give rise to nervous system tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001840 biolink:NamedThing neural plate development The process whose specific outcome is the progression of the neural plate over time, from its formation to the mature structure. The neural plate is a flat, thickened layer of ectodermal cells. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904476 biolink:NamedThing negative regulation of small GTPase binding Any process that stops, prevents or reduces the frequency, rate or extent of small GTPase binding. tmpzr1t_l9r_go_relaxed.owl downregulation of small GTPase binding|down regulation of small GTPase binding|negative regulation of Ras GTPase binding|down-regulation of Ras GTPase binding|inhibition of small GTPase binding https://github.com/geneontology/go-ontology/issues/18750 sl 2015-07-10T22:47:38Z biological_process owl:Class GO:0031267 biolink:NamedThing small GTPase binding Binding to a small monomeric GTPase. tmpzr1t_l9r_go_relaxed.owl Rho GTPase binding|Rac GTPase binding|Ran protein binding|GTP-Rho binding|Rab GTPase binding|REP|Ran-binding protein|ARF binding|GTP-Ral binding|Ran GTPase binding|Ras GTPase binding|Ras interactor activity|Ral GTPase binding|Rab interactor activity|ADP-ribosylation factor binding|Rab escort protein activity https://github.com/geneontology/go-ontology/issues/18750 GO:0017048|GO:0017049|GO:0017016|GO:0017137|GO:0048365|GO:0008536|GO:0017160|GO:0034989|GO:0030306|GO:0005084|GO:0017031 molecular_function owl:Class GO:1903654 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter Any phosphorylation of RNA polymerase II C-terminal domain serine 5 residues that is involved in positive regulation of transcription elongation from RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-25T11:00:43Z biological_process owl:Class GO:0021508 biolink:NamedThing floor plate formation The formation of a ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060995 biolink:NamedThing cell-cell signaling involved in kidney development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the kidney over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in kidney development dph 2010-01-19T08:33:40Z biological_process owl:Class GO:0052799 biolink:NamedThing coenzyme F420-dependent bicyclic nitroimidazole catabolic process The breakdown of a bicyclic nitroimidazole into simpler components in a process that requires coenzyme F420 and produces reactive nitrogen species. Hydride, from reduced coenzyme F420, is added to the bicyclic nitroimidazole, resulting in unstable substances that break down to form three stable products. The elimination of nitrous acid produces the corresponding des-nitroimidazole; hydrolysis produces a related compound; and further reduction creates an aromatic hydroxylamine metabolite that degrades further. These reactions release hyponitrous acid and nitrous acid, which is unstable and disproportionates into nitric oxide (NO) and other reactive nitrogen intermediates. tmpzr1t_l9r_go_relaxed.owl coenzyme F420-dependent nitroimidazole reduction|coenzyme F420-dependent nitroreductase activity|coenzyme F420-dependent nitroimidazole catabolism|coenzyme F420-dependent nitroimidazole breakdown biological_process owl:Class GO:0071829 biolink:NamedThing plasma lipoprotein particle disassembly The disaggregation of a plasma lipoprotein particle into its constituent components. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-08T11:14:21Z biological_process owl:Class GO:0097006 biolink:NamedThing regulation of plasma lipoprotein particle levels Any process involved in the maintenance of internal levels of plasma lipoprotein particles within an organism. tmpzr1t_l9r_go_relaxed.owl plasma lipoprotein particle homeostasis pr 2011-03-15T09:52:53Z biological_process owl:Class GO:1902234 biolink:NamedThing positive regulation of positive thymic T cell selection Any process that activates or increases the frequency, rate or extent of positive thymic T cell selection. tmpzr1t_l9r_go_relaxed.owl activation of positive thymic T lymphocyte selection|up-regulation of positive thymic T-lymphocyte selection|upregulation of positive thymic T lymphocyte selection|activation of positive thymic T cell selection|up regulation of positive thymic T-lymphocyte selection|activation of positive thymic T-cell selection|upregulation of positive thymic T cell selection|activation of positive thymic T-lymphocyte selection|up-regulation of positive thymic T cell selection|positive regulation of positive thymic T-lymphocyte selection|up regulation of positive thymic T lymphocyte selection|positive regulation of positive thymic T-cell selection|up-regulation of positive thymic T lymphocyte selection|up regulation of positive thymic T-cell selection|up regulation of positive thymic T cell selection|positive regulation of positive thymic T lymphocyte selection|upregulation of positive thymic T-cell selection|upregulation of positive thymic T-lymphocyte selection|up-regulation of positive thymic T-cell selection lb 2013-06-14T11:19:20Z biological_process owl:Class GO:0045059 biolink:NamedThing positive thymic T cell selection The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death. tmpzr1t_l9r_go_relaxed.owl positive thymic T lymphocyte selection|positive thymic T-lymphocyte selection|positive thymic T-cell selection biological_process owl:Class GO:0010103 biolink:NamedThing stomatal complex morphogenesis The process in which the anatomical structures of the stomatal complex are generated and organized. The stomatal complex is the stomatal guard cells and their associated epidermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905536 biolink:NamedThing negative regulation of eukaryotic translation initiation factor 4F complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of eukaryotic translation initiation factor 4F complex assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of eIF-4F assembly|down-regulation of eIF-4F assembly|inhibition of eIF-4F assembly|downregulation of eukaryotic translation initiation factor 4F complex assembly|down regulation of eIF4F assembly|down regulation of eukaryotic translation initiation factor 4F complex assembly|downregulation of eIF4F assembly|downregulation of eIF-4F assembly|down regulation of eIF-4F assembly|inhibition of eIF4F assembly|down-regulation of eIF4F assembly|inhibition of eukaryotic translation initiation factor 4F complex assembly|down-regulation of eukaryotic translation initiation factor 4F complex assembly|negative regulation of eIF4F assembly bc 2016-10-06T14:05:06Z biological_process owl:Class GO:0097010 biolink:NamedThing eukaryotic translation initiation factor 4F complex assembly The aggregation, arrangement and bonding together of a set of components to form the eukaryotic translation initiation factor 4F complex. tmpzr1t_l9r_go_relaxed.owl eIF-4F assembly|eIF4F assembly pr 2011-03-21T04:19:26Z biological_process owl:Class GO:0110149 biolink:NamedThing regulation of biomineralization Any process that modulates the frequency, rate or extent of biomineralization, the formation and deposition of mineral crystals by living organisms. tmpzr1t_l9r_go_relaxed.owl regulation of biomineralisation|regulation of mineralization|regulation of biomineral formation|regulation of mineralisation kmv 2019-06-10T18:06:59Z biological_process owl:Class GO:0048356 biolink:NamedThing root epithelial mucilage biosynthetic process The chemical reactions and pathways resulting in the formation of mucilage that occur in the root epithelium; mucilage is normally synthesized during root growth. tmpzr1t_l9r_go_relaxed.owl root epithelial mucilage anabolism|root epithelial mucilage synthesis|root epithelial mucilage formation|root epithelial mucilage biosynthesis biological_process owl:Class GO:0048361 biolink:NamedThing root epithelial mucilage metabolic process The chemical reactions and pathways involving mucilage that occur in the root epithelium; mucilage is normally synthesized during root growth. tmpzr1t_l9r_go_relaxed.owl root epithelial mucilage metabolism biological_process owl:Class GO:1905885 biolink:NamedThing positive regulation of triglyceride transport Any process that activates or increases the frequency, rate or extent of triglyceride transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of triacylglycerol transport|activation of triglyceride transport|up-regulation of triglyceride transport|up regulation of triglyceride transport|upregulation of triacylglycerol transport|up regulation of triacylglycerol transport|activation of triacylglycerol transport|upregulation of triglyceride transport|up-regulation of triacylglycerol transport rz 2017-01-31T11:32:47Z biological_process owl:Class GO:0034197 biolink:NamedThing triglyceride transport The directed movement of triglyceride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins. tmpzr1t_l9r_go_relaxed.owl triacylglycerol transport biological_process owl:Class GO:0008583 biolink:NamedThing mystery cell differentiation The process in which an undifferentiated cell acquires the features of a mystery cell. The mystery cells are a precluster of cells that emerge from the compound eye morphogenetic furrow, normally positioned between R3 and R4. They then disappear into the surrounding pool of undifferentiated cells and have no known fate in the mature ommatidium. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001745 biolink:NamedThing compound eye morphogenesis The morphogenetic process in which the anatomical structures of the compound eye are generated and organized. The adult compound eye is a precise assembly of 700-800 ommatidia. Each ommatidium is composed of 20 cells, identified by cell type and position. An example of compound eye morphogenesis is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl insect-type retina morphogenesis biological_process owl:Class GO:0061452 biolink:NamedThing retrotrapezoid nucleus neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the retrotrapezoid nucleus. tmpzr1t_l9r_go_relaxed.owl dph 2012-07-19T12:43:18Z biological_process owl:Class GO:0072513 biolink:NamedThing positive regulation of secondary heart field cardioblast proliferation Any process that activates or increases the frequency, rate or extent of cardioblast proliferation in the second heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. The secondary heart field is the region of the heart that will form the majority of the mesodermal component of the right ventricle, the arterial pole (outflow tract) and the venous pole (inflow tract). tmpzr1t_l9r_go_relaxed.owl negative regulation of second heart field cardioblast proliferation mah 2010-12-17T10:16:43Z biological_process owl:Class GO:0021744 biolink:NamedThing dorsal motor nucleus of vagus nerve development The process whose specific outcome is the progression of the dorsal motor nucleus of the vagus nerve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021550 biolink:NamedThing medulla oblongata development The process whose specific outcome is the progression of the medulla oblongata over time, from its formation to the mature structure. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate. tmpzr1t_l9r_go_relaxed.owl myelencephalon development|medulla development biological_process owl:Class GO:0150075 biolink:NamedThing negative regulation of protein-glutamine gamma-glutamyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of protein-glutamine gamma-glutamyltransferase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T10:10:24Z biological_process owl:Class GO:0003810 biolink:NamedThing protein-glutamine gamma-glutamyltransferase activity Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links. tmpzr1t_l9r_go_relaxed.owl TGase activity|protein-glutamine:amine gamma-glutamyltransferase|polyamine transglutaminase activity|tissue transglutaminase|factor XIIIa|fibrin stabilizing factor|fibrinoligase activity|R-glutaminyl-peptide:amine gamma-glutamyl transferase activity|transglutaminase activity|glutaminylpeptide gamma-glutamyltransferase activity Reactome:R-HSA-140851|RESID:AA0124|EC:2.3.2.13|MetaCyc:2.3.2.13-RXN|RHEA:54816|Reactome:R-HSA-6810894 molecular_function owl:Class GO:1903596 biolink:NamedThing regulation of gap junction assembly Any process that modulates the frequency, rate or extent of gap junction assembly. tmpzr1t_l9r_go_relaxed.owl rl 2014-11-07T18:51:36Z biological_process owl:Class GO:0016264 biolink:NamedThing gap junction assembly Assembly of gap junctions, which are found in most animal tissues, and serve as direct connections between the cytoplasms of adjacent cells. They provide open channels through the plasma membrane, allowing ions and small molecules (less than approximately a thousand daltons) to diffuse freely between neighboring cells, but preventing the passage of proteins and nucleic acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901796 biolink:NamedThing regulation of signal transduction by p53 class mediator Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl hjd 2013-01-18T21:51:39Z biological_process owl:Class GO:0051315 biolink:NamedThing attachment of mitotic spindle microtubules to kinetochore The cell cycle process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex as part of mitotic metaphase plate congression. tmpzr1t_l9r_go_relaxed.owl attachment of spindle microtubules to mitotic chromosome|mitotic bipolar attachment|attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|attachment of spindle microtubules to kinetochore during mitosis|attachment of spindle microtubules to kinetochore involved in mitosis This class covers transient, lateral attachment to microtubules as well as stable, correctly oriented, end-on attachment (biorientation) GO:0051314 biological_process owl:Class GO:1905538 biolink:NamedThing polysome binding Binding to a polysome. tmpzr1t_l9r_go_relaxed.owl polyribosome binding bc 2016-10-07T14:02:53Z molecular_function owl:Class GO:0110085 biolink:NamedThing mitotic actomyosin contractile ring A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the mitotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the mitotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the mitotic contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-12T17:04:02Z cellular_component owl:Class GO:1902732 biolink:NamedThing positive regulation of chondrocyte proliferation Any process that increases the frequency, rate or extent of the multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl up-regulation of chondrocyte cell proliferation|up regulation of cartilage cell proliferation|activation of chondrocyte cell proliferation|activation of cartilage cell proliferation|positive regulation of cartilage cell proliferation|upregulation of chondrocyte cell proliferation|up regulation of chondrocyte proliferation|upregulation of chondrocyte proliferation|positive regulation of chondrocyte cell proliferation|upregulation of cartilage cell proliferation|up regulation of chondrocyte cell proliferation|activation of chondrocyte proliferation|up-regulation of cartilage cell proliferation|up-regulation of chondrocyte proliferation mr 2014-02-24T16:11:18Z biological_process owl:Class GO:0035988 biolink:NamedThing chondrocyte proliferation The multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl cartilage cell proliferation|chondrocyte cell proliferation bf 2011-08-25T04:53:40Z biological_process owl:Class GO:0099027 biolink:NamedThing anchored component of presynaptic endocytic zone membrane The component of the presynaptic endocytic zone membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098835 biolink:NamedThing presynaptic endocytic zone membrane The region of the presynaptic membrane that is part of the presynaptic endocytic zone - where synaptic vesicles are endocytosed and recycled following release. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016847 biolink:NamedThing 1-aminocyclopropane-1-carboxylate synthase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) = 1-aminocyclopropane-1-carboxylate + S-methyl-5'-thioadenosine + H(+). tmpzr1t_l9r_go_relaxed.owl aminocyclopropanecarboxylate synthase activity|S-adenosyl-L-methionine methylthioadenosine-lyase activity|1-aminocyclopropane-1-carboxylate synthetase activity|ACC synthase activity|L-VG deaminase activity|1-aminocyclopropanecarboxylate synthase activity|1-aminocyclopropane-1-carboxylic acid synthase activity|L-vinylglycine deaminase activity|aminocyclopropanecarboxylic acid synthase activity|S-adenosyl-L-methionine methylthioadenosine-lyase (1-aminocyclopropane-1-carboxylate-forming) MetaCyc:4.4.1.14-RXN|KEGG_REACTION:R00179|RHEA:21744|EC:4.4.1.14 Note that this function was formerly EC:4.1.99.4. GO:0034100 molecular_function owl:Class GO:0042218 biolink:NamedThing 1-aminocyclopropane-1-carboxylate biosynthetic process The chemical reactions and pathways resulting in the formation of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants. tmpzr1t_l9r_go_relaxed.owl 1-aminocyclopropane-1-carboxylate synthesis|1-aminocyclopropane-1-carboxylate formation|1-aminocyclopropane-1-carboxylate biosynthesis|1-aminocyclopropane-1-carboxylate anabolism biological_process owl:Class GO:0031913 biolink:NamedThing contractile vacuole pore Stable structure that regulates the flow of liquid between the contractile vacuole and the surrounding medium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031164 biolink:NamedThing contractile vacuolar membrane The lipid bilayer surrounding the contractile vacuole. tmpzr1t_l9r_go_relaxed.owl contractile vacuole membrane cellular_component owl:Class GO:0098905 biolink:NamedThing regulation of bundle of His cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell of the bundle of His. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl regulation of bundle of His cardiac muscle cell action potential dph 2011-11-15T12:01:18Z biological_process owl:Class GO:0062199 biolink:NamedThing chromosome, centromeric inner repeat region The portion of the centromeric region of a chromosome that contains the inner inverted repeat region of a modular centromere and part of the central core surrounding a non-conserved central region. This region is adjacent to the central core, on each chromosome arm. tmpzr1t_l9r_go_relaxed.owl chromosome, centric outer repeat region dph 2019-12-11T20:38:14Z cellular_component owl:Class GO:0000775 biolink:NamedThing chromosome, centromeric region The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. tmpzr1t_l9r_go_relaxed.owl centromere|chromosome, pericentric region|chromosome, centric region|centromere complex SO:0000577 Note that this term can be used in place of the obsolete cellular component term 'centromere ; GO:0005698'. GO:0097521 cellular_component owl:Class GO:1902902 biolink:NamedThing negative regulation of autophagosome assembly Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of autophagosome biosynthesis|negative regulation of autophagic vacuole formation|inhibition of autophagosome formation|down-regulation of autophagic vacuole assembly|negative regulation of autophagosome formation|down-regulation of autophagosome biosynthesis|down regulation of autophagic vacuole assembly|negative regulation of PAS formation|inhibition of autophagic vacuole formation|downregulation of autophagosome formation|down regulation of autophagic vacuole formation|downregulation of PAS formation|downregulation of autophagic vacuole formation|downregulation of autophagic vacuole assembly|inhibition of autophagic vacuole assembly|negative regulation of autophagosome biosynthesis|down regulation of autophagosome formation|negative regulation of autophagic vacuole assembly|down-regulation of PAS formation|down-regulation of autophagosome formation|down regulation of autophagosome biosynthesis|downregulation of autophagosome biosynthesis|down regulation of PAS formation|down-regulation of autophagic vacuole formation|inhibition of PAS formation als 2014-04-15T10:37:40Z biological_process owl:Class GO:0000045 biolink:NamedThing autophagosome assembly The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole assembly|autophagic vacuole formation|autophagosome formation|PAS formation|autophagosome biosynthesis biological_process owl:Class GO:0010915 biolink:NamedThing regulation of very-low-density lipoprotein particle clearance Any process that modulates the rate, frequency or extent of very-low-density lipoprotein particle clearance. Very-low-density lipoprotein particle clearance is the process in which a very-low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl regulation of VLDL particle clearance|regulation of VLDL clearance biological_process owl:Class GO:0034447 biolink:NamedThing very-low-density lipoprotein particle clearance The process in which a very-low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl VLDL clearance biological_process owl:Class GO:0010898 biolink:NamedThing positive regulation of triglyceride catabolic process Any process that increases the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. tmpzr1t_l9r_go_relaxed.owl positive regulation of triacylglycerol catabolic process biological_process owl:Class GO:0019433 biolink:NamedThing triglyceride catabolic process The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl triacylglycerol catabolism|triglyceride breakdown|triglyceride catabolism|triglyceride degradation|triacylglycerol catabolic process MetaCyc:LIPAS-PWY biological_process owl:Class GO:0032114 biolink:NamedThing regulation of glucose-6-phosphatase activity Any process that modulates the frequency, rate or extent of glucose-6-phosphatase activity, the catalysis of the reaction: D-glucose 6-phosphate + H2O = D-glucose + phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004346 biolink:NamedThing glucose-6-phosphatase activity Catalysis of the reaction: D-glucopyranose 6-phosphate + H2O = D-glucose + phosphate. D-glucopyranose is also known as D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl glucose 6-phosphate phosphatase activity|D-glucose-6-phosphate phosphohydrolase activity Reactome:R-HSA-3262512|KEGG_REACTION:R00303|Reactome:R-HSA-3282876|EC:3.1.3.9|Reactome:R-HSA-71825|Reactome:R-HSA-3274540|MetaCyc:GLUCOSE-6-PHOSPHATASE-RXN|RHEA:16689|Reactome:R-HSA-3266566 molecular_function owl:Class GO:0002847 biolink:NamedThing negative regulation of T cell tolerance induction to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl down regulation of T cell tolerance induction to tumor cell|downregulation of T cell tolerance induction to tumor cell|down-regulation of T cell tolerance induction to tumor cell|inhibition of T cell tolerance induction to tumor cell biological_process owl:Class GO:1903217 biolink:NamedThing negative regulation of protein processing involved in protein targeting to mitochondrion Any process that stops, prevents or reduces the frequency, rate or extent of protein processing involved in protein targeting to mitochondrion. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein processing involved in protein targeting to mitochondrion|down regulation of mitochondrial protein processing during import|down-regulation of mitochondrial protein processing during import|downregulation of protein processing involved in protein targeting to mitochondrion|downregulation of mitochondrial protein processing during import|inhibition of protein processing involved in protein targeting to mitochondrion|negative regulation of mitochondrial protein processing during import|down regulation of protein processing involved in protein targeting to mitochondrion|inhibition of mitochondrial protein processing during import bf 2014-07-24T10:21:00Z biological_process owl:Class GO:0098862 biolink:NamedThing cluster of actin-based cell projections A cell part consisting of multiple, closely packed actin-based cell projections. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098858 biolink:NamedThing actin-based cell projection A cell projection supported by an assembly of actin filaments, and which lacks microtubules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019835 biolink:NamedThing cytolysis The rupture of cell membranes and the loss of cytoplasm. tmpzr1t_l9r_go_relaxed.owl necrosis|autolysin activity|lysis|bacteriolytic toxin activity|holin|lysin activity|bacteriocin activity Wikipedia:Cytolysis biological_process owl:Class GO:0007304 biolink:NamedThing chorion-containing eggshell formation The construction of a chorion-containing eggshell. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl eggshell formation biological_process owl:Class GO:0002454 biolink:NamedThing peripheral B cell deletion The deletion of B cells by apoptotic process occurring as part of peripheral tolerance induction and B cell selection. tmpzr1t_l9r_go_relaxed.owl peripheral B-cell deletion|peripheral B-lymphocyte deletion|peripheral B lymphocyte deletion biological_process owl:Class GO:0048565 biolink:NamedThing digestive tract development The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed. tmpzr1t_l9r_go_relaxed.owl gut development|intestinal development|intestine development biological_process owl:Class GO:1990914 biolink:NamedThing integral component of periplasmic side of plasma membrane The component of the plasma membrane consisting of the gene products that penetrate only the periplasmic side of the membrane. tmpzr1t_l9r_go_relaxed.owl An example of this is hyaA in E. coli (P69739) in PMID:23260654 (inferred from direct assay). bhm 2015-12-09T14:38:57Z cellular_component owl:Class GO:0098567 biolink:NamedThing periplasmic side of plasma membrane The side (leaflet) of a plasma membrane that faces the periplasm, and all proteins embedded in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-19T09:31:30Z cellular_component owl:Class GO:0004136 biolink:NamedThing deoxyadenosine kinase activity Catalysis of the reaction: 2'-deoxyadenosine + ATP = ADP + dAMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl deoxyadenosine kinase (phosphorylating)|ATP:deoxyadenosine 5'-phosphotransferase activity|purine-deoxyribonucleoside kinase activity KEGG_REACTION:R02089|MetaCyc:DEOXYADENOSINE-KINASE-RXN|EC:2.7.1.76|RHEA:23452 molecular_function owl:Class GO:0006170 biolink:NamedThing dAMP biosynthetic process The chemical reactions and pathways resulting in the formation of dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dAMP formation|dAMP synthesis|dAMP anabolism|dAMP biosynthesis biological_process owl:Class GO:0060551 biolink:NamedThing regulation of fructose 1,6-bisphosphate metabolic process Any process that modulates the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:20:04Z biological_process owl:Class GO:0030388 biolink:NamedThing fructose 1,6-bisphosphate metabolic process The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl fructose 1,6-bisphosphate metabolism biological_process owl:Class GO:0060970 biolink:NamedThing embryonic heart tube dorsal/ventral pattern formation The regionalization process in which the areas along the dorsal/ventral axis of the embryonic heart tube are established. This process will determine the patterns of cell differentiation along the axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T10:14:53Z biological_process owl:Class GO:0035050 biolink:NamedThing embryonic heart tube development The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110092 biolink:NamedThing nucleus leading edge The area of a motile nucleus closest to the direction of movement. tmpzr1t_l9r_go_relaxed.owl horsetail nucleus leading edge kmv 2018-02-14T22:39:58Z cellular_component owl:Class GO:0060527 biolink:NamedThing prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis The branching morphogenesis process in which the prostate epithelial cords branch freely to create the structure of the prostate acini. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060526 biolink:NamedThing prostate glandular acinus morphogenesis The process in which the prostate glandular acini are generated and organized. The glandular acini are the saclike structures of the gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098791 biolink:NamedThing Golgi apparatus subcompartment A compartment that consists of a lumen and an enclosing membrane, and is part of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl Golgi subcompartment cellular_component owl:Class GO:0090056 biolink:NamedThing regulation of chlorophyll metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-07T11:47:27Z biological_process owl:Class GO:0034290 biolink:NamedThing holin activity A compound function consisting of the regulated formation of a pore via oligomerisation of an existing pool of subunits in the plasma membrane. The resulting channel activity directly or indirectly allows murein hydrolyases to access their cell wall substrate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044660 biolink:NamedThing viral release by cytolysis via pore formation in host cell membrane The killing by a virus of a cell in its host organism by cytolysis, caused by the formation by the virus of pores in its host cell membrane. tmpzr1t_l9r_go_relaxed.owl cytolysis by virus via pore formation in host cell membrane|viral exit by cytolysis via pore formation in host cell membrane https://github.com/geneontology/go-ontology/issues/18852 jl 2012-08-01T13:23:41Z biological_process owl:Class GO:0072174 biolink:NamedThing metanephric tubule formation The developmental process pertaining to the initial formation of a metanephric tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:07:41Z biological_process owl:Class GO:0061054 biolink:NamedThing dermatome development The progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-02T12:07:37Z biological_process owl:Class GO:1902436 biolink:NamedThing negative regulation of male mating behavior Any process that stops, prevents or reduces the frequency, rate or extent of male mating behavior. tmpzr1t_l9r_go_relaxed.owl down regulation of male mating behavior|down-regulation of male mating behavior|inhibition of male mating behavior|downregulation of male mating behavior mm2 2013-10-09T15:50:05Z biological_process owl:Class GO:0033248 biolink:NamedThing negative regulation of penicillin catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl negative regulation of penicillin degradation|negative regulation of penicillin catabolism|negative regulation of penicillin breakdown biological_process owl:Class GO:0043407 biolink:NamedThing negative regulation of MAP kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of MAPK activity|negative regulation of mitogen activated protein kinase activity|negative regulation of mitogen-activated protein kinase activity|inhibition of MAPK activity|down-regulation of MAPK activity|down regulation of MAPK activity biological_process owl:Class GO:0070359 biolink:NamedThing actin polymerization-dependent cell motility involved in migration of symbiont in host A process involved in the controlled movement of a bacterial cell within a host cell, powered by the continuous polymerization of host actin at one pole of the cell. tmpzr1t_l9r_go_relaxed.owl actin polymerization-dependent cell motility involved in migration of symbiont within host biological_process owl:Class GO:0070360 biolink:NamedThing migration of symbiont within host by polymerization of host actin The directional movement of an organism, usually a bacterial cell, from one place to another within its host organism, by a process involving continuous polymerization of host actin at one pole of the symbiont cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002036 biolink:NamedThing regulation of L-glutamate import across plasma membrane Any process that modulates the frequency, rate or extent of L-glutamate import into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of L-glutamate uptake|regulation of L-glutamate import|regulation of L-glutamate transport al 2012-06-13T07:34:08Z GO:1900920 biological_process owl:Class GO:0098712 biolink:NamedThing L-glutamate import across plasma membrane The directed movement of L-glutamate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-glutamate(1-) import into cell|L-glutamate(1-) import across plasma membrane|L-glutamate import into cell mah 2013-06-12T12:32:47Z GO:1990123|GO:1903802 biological_process owl:Class GO:0110083 biolink:NamedThing positive regulation of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly Any process that activates or increases the frequency, rate or extent of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T19:30:03Z biological_process owl:Class GO:1903476 biolink:NamedThing protein localization to cell division site involved in mitotic actomyosin contractile ring assembly Any protein localization to cell division site that is involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl protein localization to cell division site involved in actomyosin contractile ring assembly involved in cytokinesis after mitosis|protein localization to cell division site involved in contractile ring assembly involved in mitotic cytokinesis|protein localisation to cell division site involved in mitotic actomyosin contractile ring assembly vw 2014-09-23T14:52:37Z biological_process owl:Class GO:0098895 biolink:NamedThing postsynaptic endosome membrane The lipid bilayer surrounding a postsynaptic endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090186 biolink:NamedThing regulation of pancreatic juice secretion Any process that modulates the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:03:24Z biological_process owl:Class GO:0030867 biolink:NamedThing rough endoplasmic reticulum membrane The lipid bilayer surrounding the rough endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl rough ER membrane|RER membrane NIF_Subcellular:sao3089754107 cellular_component owl:Class GO:0014036 biolink:NamedThing neural crest cell fate specification The process in which a cell becomes capable of differentiating autonomously into a neural crest cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060380 biolink:NamedThing regulation of single-stranded telomeric DNA binding Any process that modulates the frequency, rate or extent of binding to single-stranded telomeric DNA. tmpzr1t_l9r_go_relaxed.owl regulation of telomeric ssDNA binding biological_process owl:Class GO:0043047 biolink:NamedThing single-stranded telomeric DNA binding Binding to single-stranded telomere-associated DNA. tmpzr1t_l9r_go_relaxed.owl telomeric ssDNA binding molecular_function owl:Class GO:0036306 biolink:NamedThing embryonic heart tube elongation The developmental growth that results in the increase in length of the embryonic heart tube. The embryonic heart tube is an epithelial tube that will give rise to the mature heart. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T13:54:37Z biological_process owl:Class GO:0030988 biolink:NamedThing high molecular weight kininogen receptor complex A protein complex that acts as a receptor for high molecular weight kininogens. In humans, this receptor includes the CK1 and uPAR proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007049 biolink:NamedThing cell cycle The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. tmpzr1t_l9r_go_relaxed.owl cell-division cycle Wikipedia:Cell_cycle biological_process owl:Class GO:0071026 biolink:NamedThing cytoplasmic RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs within the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cytoplasmic RNA quality control|cytoplasmic aberrant RNA catabolic process krc 2009-07-28T03:14:03Z biological_process owl:Class GO:1903441 biolink:NamedThing protein localization to ciliary membrane A process in which a protein is transported to, or maintained in, a location within a ciliary membrane. tmpzr1t_l9r_go_relaxed.owl protein localization in ciliary membrane|protein localisation to ciliary membrane|protein localisation in ciliary membrane pr 2014-09-16T15:15:39Z biological_process owl:Class GO:0060442 biolink:NamedThing branching involved in prostate gland morphogenesis The process in which the branching structure of the prostate gland is generated and organized. A branch is a division or offshoot from a main stem. tmpzr1t_l9r_go_relaxed.owl prostate gland branching morphogenesis|prostate branching biological_process owl:Class GO:0061317 biolink:NamedThing canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin and contributing to cardiac muscle cell fate commitment. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment|canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment dph 2010-09-24T09:29:21Z biological_process owl:Class GO:0060923 biolink:NamedThing cardiac muscle cell fate commitment The commitment of cells to specific cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. tmpzr1t_l9r_go_relaxed.owl cardiomyocyte cell fate commitment|heart muscle cell fate commitment dph 2009-09-29T11:13:32Z biological_process owl:Class GO:0090152 biolink:NamedThing establishment of protein localization to mitochondrial membrane involved in mitochondrial fission The directed movement of a protein to a specific location in the mitochondrial membrane that contributes to mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation in mitochondrial membrane involved in mitochondrial fission|establishment of protein localization in mitochondrial membrane involved in mitochondrial fission tb 2009-12-08T03:18:51Z biological_process owl:Class GO:0000266 biolink:NamedThing mitochondrial fission The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl mitochondrial division|mitochondrial proliferation biological_process owl:Class GO:0010808 biolink:NamedThing positive regulation of synaptic vesicle priming Any process that increases the frequency, rate or extent of synaptic vesicle priming. Synaptic vesicle priming is the formation of SNARE-containing complexes, bringing synaptic vesicle membrane and plasma membranes into close proximity and thereby facilitating membrane fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046797 biolink:NamedThing viral procapsid maturation The refolding and structural rearrangements of individual capsid subunits to transition from the intermediate procapsid, to the more stable capsid structure. tmpzr1t_l9r_go_relaxed.owl viral capsid maturation|virion maturation|capsid maturation UniProtKB-KW:KW-1273 biological_process owl:Class GO:0019075 biolink:NamedThing virus maturation The refolding and structural rearrangements of virion parts to transition from the intermediate virion to the more mature virion. Maturation usually involves proteolysis events and changes in the folding of the virion proteins. Can occur inside the host cell or after release. tmpzr1t_l9r_go_relaxed.owl bacteriophage maturation|viral maturation biological_process owl:Class GO:1903272 biolink:NamedThing positive regulation of cytoplasmic translational elongation through polyproline stretches Any process that activates or increases the frequency, rate or extent of cytoplasmic translational elongation through polyproline stretches. tmpzr1t_l9r_go_relaxed.owl up-regulation of cytoplasmic translational elongation through polyproline stretches|up regulation of cytoplasmic translational elongation through polyproline stretches|activation of cytoplasmic translational elongation through polyproline stretches|upregulation of cytoplasmic translational elongation through polyproline stretches mcc 2014-08-08T14:54:16Z biological_process owl:Class GO:0097622 biolink:NamedThing cytoplasmic translational elongation through polyproline stretches The successive addition of amino acid residues to a nascent polypeptide chain, proceeding through regions of multiple repeated proline codons, during protein biosynthesis in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-06T16:29:10Z biological_process owl:Class GO:0002465 biolink:NamedThing peripheral tolerance induction Tolerance induction in the peripheral lymphoid tissues: blood, lymph nodes, spleen, and mucosal-associated lymphoid tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009862 biolink:NamedThing systemic acquired resistance, salicylic acid mediated signaling pathway The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. tmpzr1t_l9r_go_relaxed.owl salicylic acid mediated signaling pathway (systemic acquired resistance)|systemic acquired resistance, salicylic acid mediated signalling pathway biological_process owl:Class GO:0009627 biolink:NamedThing systemic acquired resistance The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. tmpzr1t_l9r_go_relaxed.owl salicylic acid-dependent systemic resistance Wikipedia:Systemic_acquired_resistance biological_process owl:Class GO:0010863 biolink:NamedThing positive regulation of phospholipase C activity Any process that increases the rate of phospholipase C activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900227 biolink:NamedThing positive regulation of NLRP3 inflammasome complex assembly Any process that activates or increases the frequency, rate or extent of NLRP3 inflammasome complex assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of NLRP3 inflammasome activation|up regulation of NLRP3 inflammasome complex assembly|upregulation of NLRP3 inflammasome activation|activation of NLRP3 inflammasome complex assembly|up-regulation of NLRP3 inflammasome activation|up-regulation of NALP3 inflammasome complex assembly|up-regulation of NLRP3 inflammasome complex assembly|upregulation of NALP3 inflammasome complex assembly|activation of NLRP3 inflammasome activation|up regulation of NALP3 inflammasome complex assembly|upregulation of NLRP3 inflammasome complex assembly|activation of NALP3 inflammasome complex assembly|positive regulation of NALP3 inflammasome complex assembly|positive regulation of NLRP3 inflammasome activation jl 2012-03-22T04:18:32Z biological_process owl:Class GO:0044546 biolink:NamedThing NLRP3 inflammasome complex assembly The aggregation, arrangement and bonding together of a set of components to form the NLRP3 inflammasome complex, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl NLRP3 inflammasome activation|NALP3 inflammasome complex assembly https://github.com/geneontology/go-ontology/issues/21092 jl 2012-03-22T01:27:21Z biological_process owl:Class GO:0150021 biolink:NamedThing apical dendrite morphogenesis The process in which the anatomical structures of an apical dendrite are generated and organized. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:50:00Z biological_process owl:Class GO:0150022 biolink:NamedThing apical dendrite development The process whose specific outcome is the progression of an apical dendrite over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:52:40Z biological_process owl:Class GO:0046847 biolink:NamedThing filopodium assembly The assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone. tmpzr1t_l9r_go_relaxed.owl filopodia formation|filopodium formation|filopodia biosynthesis biological_process owl:Class GO:0043629 biolink:NamedThing ncRNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of a non-coding RNA (ncRNA) molecule. In eukaryotes, substrates include nuclear non-coding RNAs such as precursors and a variety of incorrectly processed forms of snRNAs, snoRNAs, rRNAs, and tRNAs, as well as discarded RNA fragments which have been removed from ncRNA primary transcripts. Polyadenylation of precursors is often linked to termination of transcription, but polyadenylation of RNAs targeted for degradation may also occur post-transcriptionally. This polyadenylation is important both for 3'-end processing to produce mature ncRNA species and also for targeting incorrectly processed or discarded RNA molecules for degradation. tmpzr1t_l9r_go_relaxed.owl non-coding RNA polyadenylation biological_process owl:Class GO:0070245 biolink:NamedThing positive regulation of thymocyte apoptotic process Any process that activates or increases the frequency, rate or extent of thymocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of thymocyte apoptosis|activation of thymocyte apoptosis|up-regulation of thymocyte apoptosis|stimulation of thymocyte apoptosis|positive regulation of immature T cell apoptosis|up regulation of thymocyte apoptosis|positive regulation of thymocyte apoptosis Note that a thymocyte is an immature T cell located in the thymus (CL:0000893). biological_process owl:Class GO:2001028 biolink:NamedThing positive regulation of endothelial cell chemotaxis Any process that activates or increases the frequency, rate or extent of endothelial cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl rl 2011-08-22T01:07:34Z biological_process owl:Class GO:0035767 biolink:NamedThing endothelial cell chemotaxis The directed movement of an endothelial cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl bf 2011-03-31T04:31:37Z biological_process owl:Class GO:0008545 biolink:NamedThing JUN kinase kinase activity Catalysis of the phosphorylation of tyrosine and threonine residues in a c-Jun NH2-terminal kinase (JNK), a member of a subgroup of mitogen-activated protein kinases (MAPKs), which signal in response to cytokines and exposure to environmental stress. JUN kinase kinase (JNKK) is a dual-specificity protein kinase kinase and requires activation by a serine/threonine kinase JUN kinase kinase kinase. tmpzr1t_l9r_go_relaxed.owl JNKK Reactome:R-HSA-168162 molecular_function owl:Class GO:0007254 biolink:NamedThing JNK cascade An intracellular protein kinase cascade containing at least a JNK (a MAPK), a JNKK (a MAPKK) and a JUN3K (a MAP3K). The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. tmpzr1t_l9r_go_relaxed.owl JNK2 cascade|MAPK8 cascade|JNK3 cascade|MAPK10 cascade|MAPK9 cascade|SAPK cascade|stress-activated protein kinase cascade|c-Jun N-terminal kinase cascade|JNK1 cascade biological_process owl:Class GO:0097537 biolink:NamedThing Y-shaped link A Y-shaped protein complex in the ciliary transition zone that connects the cilium axoneme to the ciliary necklace. Both protein sorting and protein gating occur at this point in the cilium allowing some, but not all proteins to enter the cilium. tmpzr1t_l9r_go_relaxed.owl membrane-microtubule complex|Y-link structure|Y-shaped assemblage|Y-shaped fibre|Y-link|Y-shaped linker|Y-shaped fiber pr 2013-12-03T16:34:34Z cellular_component owl:Class GO:0035869 biolink:NamedThing ciliary transition zone A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm. tmpzr1t_l9r_go_relaxed.owl cilium transition zone|connecting cilium|cilial transition zone Depending on the species, this region may have a distinct geometrically shaped electron-dense structure within the axonemal lumen visible in electron microscopy images; most animals don't display this inner structure. The axoneme extends through the ciliary transition zone, but only consists of the outer doublets. The central pair, axonemal spokes, and dynein complexes are not found in this part of the ciliary shaft. Note that the connecting cilium of the photoreceptor cells is thought to be equivalent to the transition zone. bf 2011-05-25T03:09:58Z cellular_component owl:Class GO:0048514 biolink:NamedThing blood vessel morphogenesis The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001568 biolink:NamedThing blood vessel development The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045107 biolink:NamedThing intermediate filament polymerization Assembly of intermediate filaments by the addition of component monomers to a filament. Polymerization of intermediate filament proteins results from interactions among several distinct binding sites on the constituent proteins. Nuclear lamin head-to-tail polymers arise from one such interaction. Deletion analysis localized the binding sites to the ends of the rod domain that are highly conserved among all intermediate filament proteins. Data indicate that one type of interaction in intermediate filament protein polymerization is the longitudinal binding of dimers via the conserved end segments of the coiled-coil rod domain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035847 biolink:NamedThing uterine epithelium development The progression of an epithelium of the uterus over time from its initial formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl uterus epithelial development bf 2011-05-10T10:57:45Z biological_process owl:Class GO:0060065 biolink:NamedThing uterus development The reproductive developmental process whose specific outcome is the progression of the uterus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl Mullerian tract development biological_process owl:Class GO:1901258 biolink:NamedThing positive regulation of macrophage colony-stimulating factor production Any process that activates or increases the frequency, rate or extent of macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl activation of M-CSF production|positive regulation of M-CSF production|upregulation of M-CSF production|up regulation of M-CSF production|upregulation of macrophage colony-stimulating factor production|up-regulation of macrophage colony-stimulating factor production|up-regulation of M-CSF production|activation of macrophage colony-stimulating factor production|up regulation of macrophage colony-stimulating factor production vk 2012-08-10T08:28:36Z biological_process owl:Class GO:0036301 biolink:NamedThing macrophage colony-stimulating factor production The appearance of macrophage colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl M-CSF production bf 2012-08-07T14:07:13Z biological_process owl:Class GO:0070787 biolink:NamedThing conidiophore development The process whose specific outcome is the progression of the conidiophore over time, from its formation to the mature structure. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T01:30:36Z biological_process owl:Class GO:0008347 biolink:NamedThing glial cell migration The orderly movement of a glial cell, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system. tmpzr1t_l9r_go_relaxed.owl glia cell migration GO:0043359 biological_process owl:Class GO:0042063 biolink:NamedThing gliogenesis The process that results in the generation of glial cells. This includes the production of glial progenitors and their differentiation into mature glia. tmpzr1t_l9r_go_relaxed.owl glial cell generation biological_process owl:Class GO:0098749 biolink:NamedThing cerebellar neuron development The process whose specific outcome is the progression of a cerebellar neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045455 biolink:NamedThing ecdysteroid metabolic process The chemical reactions and pathways involving ecdysteroids, a group of polyhydroxylated ketosteroids ubiquitous in insects and other arthropods, in which they initiate post-embryonic development, including the metamorphosis of immature forms and the development of the reproductive system and the maturation of oocytes in adult females. tmpzr1t_l9r_go_relaxed.owl ecdysteroid metabolism biological_process owl:Class GO:0014736 biolink:NamedThing negative regulation of muscle atrophy Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle atrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098912 biolink:NamedThing membrane depolarization during atrial cardiac muscle cell action potential The process in which atrial cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl atrial cardiac muscle cell depolarization|electrocardiogram PR interval|atrial depolarization biological_process owl:Class GO:0086014 biolink:NamedThing atrial cardiac muscle cell action potential An action potential that occurs in an atrial cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:49:13Z biological_process owl:Class GO:2001215 biolink:NamedThing regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity Any process that modulates the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. tmpzr1t_l9r_go_relaxed.owl regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|regulation of HMG-CoA reductase activity bf 2011-11-16T11:34:11Z biological_process owl:Class GO:0004420 biolink:NamedThing hydroxymethylglutaryl-CoA reductase (NADPH) activity Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl hydroxymethylglutaryl-CoA reductase activity|3-hydroxy-3-methylglutaryl-coenzyme A reductase activity|HMG-CoA reductase activity https://github.com/geneontology/go-ontology/issues/21411 RHEA:15989|MetaCyc:1.1.1.34-RXN|KEGG_REACTION:R02082|EC:1.1.1.34|Reactome:R-HSA-191352 GO:0042282 molecular_function owl:Class GO:0031362 biolink:NamedThing anchored component of external side of plasma membrane The component of the plasma membrane consisting of the gene products that are tethered to the external side of the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl anchored to external side of plasma membrane|anchored to external leaflet of plasma membrane cellular_component owl:Class GO:0009897 biolink:NamedThing external side of plasma membrane The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl outer surface of cytoplasmic membrane|external leaflet of plasma membrane|juxtamembrane cellular_component owl:Class GO:1904738 biolink:NamedThing vascular associated smooth muscle cell migration The orderly movement of a vascular associated smooth muscle cell from one site to another. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell migration rph 2015-10-15T09:56:00Z biological_process owl:Class GO:1905822 biolink:NamedThing regulation of mitotic sister chromatid arm separation Any process that modulates the frequency, rate or extent of mitotic sister chromatid arm separation. tmpzr1t_l9r_go_relaxed.owl als 2017-01-16T13:36:29Z biological_process owl:Class GO:1990891 biolink:NamedThing mitotic sister chromatid arm separation The cell cycle process in which sister chromatid arms are physically detached from each other during mitosis. tmpzr1t_l9r_go_relaxed.owl mah 2015-11-03T14:01:16Z biological_process owl:Class GO:0097729 biolink:NamedThing 9+2 motile cilium A motile cilium where the axoneme has a ring of nine outer microtubule doublets plus two central microtubules (and is therefore called a 9+2 axoneme). tmpzr1t_l9r_go_relaxed.owl motile 9+2 cilium|conventional motile cilium|sperm flagellum This type of cilia may be present in solitary (so-called flagella, e.g. in sperm) or in multiple copies (so-called conventional motile cilia, e.g. in tracheal epithelium, ependyma or oviduct epithelium). pr 2016-09-27T15:26:34Z cellular_component owl:Class GO:2000006 biolink:NamedThing regulation of metanephric comma-shaped body morphogenesis Any process that modulates the frequency, rate or extent of metanephric comma-shaped body morphogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-30T02:17:12Z biological_process owl:Class GO:0072278 biolink:NamedThing metanephric comma-shaped body morphogenesis The process in which the metanephric comma-shaped body is generated and organized. The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:14:42Z biological_process owl:Class GO:1902276 biolink:NamedThing regulation of pancreatic amylase secretion Any process that modulates the frequency, rate or extent of pancreatic amylase secretion. tmpzr1t_l9r_go_relaxed.owl bf 2013-07-03T12:15:20Z biological_process owl:Class GO:0006508 biolink:NamedThing proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. tmpzr1t_l9r_go_relaxed.owl ATP-dependent proteolysis|peptidolysis Wikipedia:Proteolysis This term was intentionally placed under 'protein metabolic process ; GO:0019538' rather than 'protein catabolic process ; GO:0030163' to cover all processes centered on breaking peptide bonds, including those involved in protein processing. biological_process owl:Class GO:0003407 biolink:NamedThing neural retina development The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T02:15:14Z biological_process owl:Class GO:0030708 biolink:NamedThing germarium-derived female germ-line cyst encapsulation Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the germarium. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007293 biolink:NamedThing germarium-derived egg chamber formation Construction of a stage-1 egg chamber in the anterior part of the germarium, from the progeny of germ-line and somatic stem cells. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110040 biolink:NamedThing pharynx morphogenesis The process in which the anatomical structures of the pharynx are generated and organized. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T20:51:28Z biological_process owl:Class GO:0099501 biolink:NamedThing exocytic vesicle membrane The lipid bilayer surrounding an exocytic vesicle. tmpzr1t_l9r_go_relaxed.owl secretory vesicle membrane cellular_component owl:Class GO:0010529 biolink:NamedThing negative regulation of transposition Any process that decreases the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021797 biolink:NamedThing forebrain anterior/posterior pattern specification The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain. tmpzr1t_l9r_go_relaxed.owl forebrain anterior-posterior pattern specification biological_process owl:Class GO:0021871 biolink:NamedThing forebrain regionalization The regionalization process resulting in the creation of areas within the forebrain that will direct the behavior of cell migration in differentiation as the forebrain develops. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902082 biolink:NamedThing positive regulation of calcium ion import into sarcoplasmic reticulum Any process that activates or increases the frequency, rate or extent of calcium ion import into sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion import into sarcoplasmic reticulum|activation of calcium ion import into sarcoplasmic reticulum|upregulation of calcium ion import into sarcoplasmic reticulum|up regulation of calcium ion import into sarcoplasmic reticulum rl 2013-04-24T16:08:03Z biological_process owl:Class GO:0070943 biolink:NamedThing neutrophil-mediated killing of symbiont cell The directed killing of a symbiont target cell by a neutrophil. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated killing of symbiont cell mah 2009-10-01T01:52:03Z biological_process owl:Class GO:1904705 biolink:NamedThing regulation of vascular associated smooth muscle cell proliferation Any process that modulates the frequency, rate or extent of vascular smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle cell proliferation|regulation of VSMC proliferation sl 2015-10-01T16:05:20Z biological_process owl:Class GO:1990874 biolink:NamedThing vascular associated smooth muscle cell proliferation The multiplication or reproduction of vascular smooth muscle cells, resulting in the expansion of a cell population. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell proliferation|VSMC proliferation sl 2015-09-29T16:34:59Z biological_process owl:Class GO:0071573 biolink:NamedThing shelterin complex assembly The aggregation, arrangement and bonding together of a set of components to form a shelterin complex. A shelterin complex is a nuclear telomere cap complex that is formed by the association of telomeric ssDNA- and dsDNA-binding proteins with telomeric DNA, and is involved in telomere protection and recruitment of telomerase. tmpzr1t_l9r_go_relaxed.owl shelterin complex formation|Pot1-Tpz1 complex assembly|telosome assembly|Pot1 complex assembly mah 2010-01-26T01:45:20Z biological_process owl:Class GO:0032200 biolink:NamedThing telomere organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins. tmpzr1t_l9r_go_relaxed.owl telomere organisation|telomere organization and biogenesis|organization of chromosome, telomeric region|chromosome organization, telomeric biological_process owl:Class GO:0098686 biolink:NamedThing hippocampal mossy fiber to CA3 synapse One of the giant synapses that form between the mossy fiber axons of dentate gyrus granule cells and the large complex spines of CA3 pyramidal cells. It consists of a giant bouton known as the mossy fiber expansion, synapsed to the complex, multiheaded spine (thorny excresence) of a CA3 pyramidal cell. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T16:29:58Z cellular_component owl:Class GO:0097464 biolink:NamedThing thorny excrescence Large complex spine protruding from a dendrite. Each excrescence is formed by a cluster of spine heads. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_467 pr 2012-12-21T08:00:13Z cellular_component owl:Class GO:0061459 biolink:NamedThing L-arginine transmembrane transporter activity Enables the transfer of L-arginine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl arginine-importing ATPase activity|ATPase-coupled L-arginine transmembrane transporter activity|arginine permease activity|arginine porter activity|arginine transmembrane transporter activity|histidine/arginine/lysine/ornithine porter activity|L-arginine transporter activity|ATP-dependent L-arginine transmembrane transporter activity|L-arginine-importing ATPase activity https://github.com/geneontology/go-ontology/issues/22228 RHEA:32143 dph 2012-09-25T08:37:29Z GO:0015181|GO:0102022|GO:0015598|GO:0005288 molecular_function owl:Class GO:0120103 biolink:NamedThing centriolar subdistal appendage A protein complex which assembles on the mother centriole during cilium formation, adjacent and proximal to a centriolar distal appendage. In human, it contains ODF2, CNTRL, NIN, CCDC120c and CCDC68. tmpzr1t_l9r_go_relaxed.owl subdistal appendage of basal body|subdistal appendage of mother centriole|subdistal appendage of centriole krc 2017-10-10T15:31:40Z cellular_component owl:Class GO:0005929 biolink:NamedThing cilium A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. tmpzr1t_l9r_go_relaxed.owl microtubule-based flagellum|eukaryotic flagellum|flagellum|primary cilium FMA:67181|Wikipedia:Cilium|NIF_Subcellular:sao787716553 Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. GO:0072372 cellular_component owl:Class GO:1901219 biolink:NamedThing regulation of cardiac chamber morphogenesis Any process that modulates the frequency, rate or extent of cardiac chamber morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of heart chamber morphogenesis rl 2012-08-06T17:59:11Z biological_process owl:Class GO:0003206 biolink:NamedThing cardiac chamber morphogenesis The process in which a cardiac chamber is generated and organized. A cardiac chamber is an enclosed cavity within the heart. tmpzr1t_l9r_go_relaxed.owl heart chamber morphogenesis dph 2009-10-13T09:14:51Z biological_process owl:Class GO:0045056 biolink:NamedThing transcytosis The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Transcytosis biological_process owl:Class GO:1903186 biolink:NamedThing regulation of vitellogenesis Any process that modulates the frequency, rate or extent of vitellogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of yolk production mr 2014-07-14T19:28:00Z biological_process owl:Class GO:0007296 biolink:NamedThing vitellogenesis The production of yolk. Yolk is a mixture of materials used for embryonic nutrition. tmpzr1t_l9r_go_relaxed.owl yolk production|yolk formation Wikipedia:Vitellogenesis biological_process owl:Class GO:1902305 biolink:NamedThing regulation of sodium ion transmembrane transport Any process that modulates the frequency, rate or extent of sodium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of sodium ion membrane transport rl 2013-07-18T13:33:53Z biological_process owl:Class GO:0035725 biolink:NamedThing sodium ion transmembrane transport A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sodium ion membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2011-03-10T02:52:36Z biological_process owl:Class GO:0048721 biolink:NamedThing clypeus morphogenesis The process in which the anatomical structures of the clypeus are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048723 biolink:NamedThing clypeus development The process whose specific outcome is the progression of the clypeus over time, from its formation to the mature structure. The clypeus is the shield-shaped plate on an insect's head. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014011 biolink:NamedThing Schwann cell proliferation involved in axon regeneration The multiplication or reproduction of Schwann cells by cell division, resulting in the expansion of their population in response to an axonal lesion. The newly generated Schwann cells support subsequent axon regeneration in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903666 biolink:NamedThing positive regulation of asexual reproduction Any process that activates or increases the frequency, rate or extent of asexual reproduction. tmpzr1t_l9r_go_relaxed.owl activation of asexual reproduction|up-regulation of asexual reproduction|upregulation of asexual reproduction|up regulation of asexual reproduction pf 2014-11-26T21:13:40Z biological_process owl:Class GO:0097579 biolink:NamedThing extracellular sequestering of copper ion The process of binding or confining copper ions in an extracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl extracellular sequestration of copper ion|extracellular storage of copper ion|extracellular copper ion retention|extracellular copper ion sequestration|extracellular retention of copper ion|extracellular copper ion sequestering|extracellular copper ion storage pr 2014-02-28T11:18:04Z biological_process owl:Class GO:0006878 biolink:NamedThing cellular copper ion homeostasis Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl copper homeostasis biological_process owl:Class GO:0002377 biolink:NamedThing immunoglobulin production The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl antibody production|immunoglobulin biosynthetic process|immunoglobulin secretion Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0048305|GO:0002378 biological_process owl:Class GO:0071048 biolink:NamedThing nuclear retention of unspliced pre-mRNA at the site of transcription The process involved in retention of incorrectly or incompletely spliced pre-mRNA within the nucleus at the site of transcription. tmpzr1t_l9r_go_relaxed.owl krc 2009-08-11T02:19:03Z biological_process owl:Class GO:0071030 biolink:NamedThing nuclear mRNA surveillance of spliceosomal pre-mRNA splicing The set of processes involved in identifying and degrading incorrectly spliced pre-mRNAs within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear RNA catabolic process of incorrectly spliced pre-mRNA|nuclear mRNA quality control of incorrectly spliced pre-mRNA krc 2009-07-28T04:24:04Z biological_process owl:Class GO:0003069 biolink:NamedThing acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure The process in which acetylcholine signaling causes vasodilation, resulting in a change in blood pressure. tmpzr1t_l9r_go_relaxed.owl vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure biological_process owl:Class GO:0038027 biolink:NamedThing apolipoprotein A-I-mediated signaling pathway A series of molecular signals initiated by the binding of apolipoprotein A-I to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl apolipoprotein A-I-mediated signalling pathway bf 2011-08-02T02:13:41Z biological_process owl:Class GO:1902183 biolink:NamedThing regulation of shoot apical meristem development Any process that modulates the frequency, rate or extent of shoot apical meristem development. tmpzr1t_l9r_go_relaxed.owl regulation of promeristem development|regulation of SAM development|regulation of primary shoot meristem development tb 2013-05-31T16:33:55Z biological_process owl:Class GO:1990674 biolink:NamedThing Golgi cis cisterna membrane The lipid bilayer surrounding any of the thin, flattened compartments that form the cis portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl cis-Golgi cisterna membrane bhm 2015-03-02T11:48:00Z cellular_component owl:Class GO:0000137 biolink:NamedThing Golgi cis cisterna The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900624 biolink:NamedThing negative regulation of monocyte aggregation Any process that stops, prevents or reduces the frequency, rate or extent of monocyte aggregation. tmpzr1t_l9r_go_relaxed.owl down-regulation of mononuclear phagocyte aggregation|downregulation of monocyte aggregation|downregulation of mononuclear phagocyte aggregation|negative regulation of mononuclear phagocyte aggregation|inhibition of mononuclear phagocyte aggregation|inhibition of monocyte aggregation|down-regulation of monocyte aggregation|down regulation of monocyte aggregation|down regulation of mononuclear phagocyte aggregation vk 2012-05-21T01:07:37Z biological_process owl:Class GO:0070487 biolink:NamedThing monocyte aggregation The adhesion of one monocyte to one or more other monocytes via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl mononuclear phagocyte aggregation biological_process owl:Class GO:0051627 biolink:NamedThing negative regulation of epinephrine uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of epinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of adrenaline uptake|down-regulation of epinephrine uptake|down regulation of epinephrine uptake|negative regulation of epinephrine import|downregulation of epinephrine uptake biological_process owl:Class GO:0051625 biolink:NamedThing epinephrine uptake The directed movement of epinephrine into a cell, typically presynaptic neurons or glial cells. Epinephrine is a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. tmpzr1t_l9r_go_relaxed.owl adrenaline uptake|adrenaline reuptake|epinephrine import|epinephrine reuptake biological_process owl:Class GO:0071015 biolink:NamedThing U12-type prespliceosome A spliceosomal complex that is formed by the cooperative binding of the heterodimeric U11/U12 snRNP to the 5' splice site and the branch point sequence. The U12-type prespliceosome includes many proteins in addition to those found in the U11/U12 heterodimeric snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. tmpzr1t_l9r_go_relaxed.owl minor prespliceosome|mammalian U12-type spliceosomal complex A|yeast U12-type spliceosomal complex B|AT-AC prespliceosome mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1905128 biolink:NamedThing positive regulation of axo-dendritic protein transport Any process that activates or increases the frequency, rate or extent of axo-dendritic protein transport. tmpzr1t_l9r_go_relaxed.owl up regulation of axonal protein transport|up-regulation of axo-dendritic protein transport|upregulation of axo-dendritic protein transport|up regulation of axo-dendritic protein transport|upregulation of axonal protein transport|activation of axo-dendritic protein transport|up-regulation of axonal protein transport|activation of axonal protein transport|positive regulation of axonal protein transport sl 2016-04-11T20:38:48Z biological_process owl:Class GO:1905292 biolink:NamedThing regulation of neural crest cell differentiation Any process that modulates the frequency, rate or extent of neural crest cell differentiation. tmpzr1t_l9r_go_relaxed.owl rl 2016-06-28T15:02:01Z biological_process owl:Class GO:0034505 biolink:NamedThing tooth mineralization The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentin and cementum. tmpzr1t_l9r_go_relaxed.owl tooth calcification biological_process owl:Class GO:1900690 biolink:NamedThing negative regulation of gliotoxin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of gliotoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of gliotoxin biosynthesis|down regulation of gliotoxin formation|negative regulation of gliotoxin synthesis|negative regulation of gliotoxin formation|inhibition of gliotoxin synthesis|inhibition of gliotoxin anabolism|down-regulation of gliotoxin formation|down regulation of gliotoxin biosynthetic process|inhibition of gliotoxin biosynthesis|down-regulation of gliotoxin anabolism|inhibition of gliotoxin formation|down-regulation of gliotoxin biosynthetic process|downregulation of gliotoxin synthesis|down-regulation of gliotoxin synthesis|downregulation of gliotoxin biosynthesis|down-regulation of gliotoxin biosynthesis|down regulation of gliotoxin anabolism|down regulation of gliotoxin biosynthesis|down regulation of gliotoxin synthesis|inhibition of gliotoxin biosynthetic process|negative regulation of gliotoxin anabolism|downregulation of gliotoxin biosynthetic process|downregulation of gliotoxin formation|downregulation of gliotoxin anabolism di 2012-05-22T04:52:00Z biological_process owl:Class GO:0010452 biolink:NamedThing histone H3-K36 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 36 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H3 K36 methylation|histone H3K36me|histone H3 K36 methylation biological_process owl:Class GO:0061552 biolink:NamedThing ganglion morphogenesis The process in which the anatomical structures of ganglion are generated and organized. tmpzr1t_l9r_go_relaxed.owl ganglia morphogenesis dph 2013-07-10T08:44:57Z biological_process owl:Class GO:0061548 biolink:NamedThing ganglion development The process whose specific outcome is the progression of a ganglion over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl gangliogenesis|ganglia development dph 2013-07-10T08:36:12Z biological_process owl:Class GO:0035402 biolink:NamedThing histone kinase activity (H3-T11 specific) Catalysis of the transfer of a phosphate group to the threonine-11 residue of the N-terminal tail of histone H3. tmpzr1t_l9r_go_relaxed.owl histone threonine kinase activity (H3-T11 specific)|histone-threonine kinase activity (H3-T11 specific) bf 2010-03-24T10:04:40Z molecular_function owl:Class GO:0035407 biolink:NamedThing histone H3-T11 phosphorylation The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 11 of the histone. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-24T10:12:01Z biological_process owl:Class GO:0071915 biolink:NamedThing protein-lysine lysylation The addition of lysine group to a lysine residue in a protein, producing N6-(lysyl)-L-lysine. This modification is observed in, and is probably unique to, translation elongation factor P (EF-P). tmpzr1t_l9r_go_relaxed.owl protein amino acid lysylation mah 2010-09-24T10:01:57Z biological_process owl:Class GO:0007432 biolink:NamedThing salivary gland boundary specification Determination of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland. tmpzr1t_l9r_go_relaxed.owl salivary gland determination biological_process owl:Class GO:0032615 biolink:NamedThing interleukin-12 production The appearance of interleukin-12 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-12 production|CLMF production|interleukin-12 biosynthetic process|interleukin-12 secretion|NKSF production GO:0072610|GO:0042090 biological_process owl:Class GO:0047145 biolink:NamedThing demethylsterigmatocystin 6-O-methyltransferase activity Catalysis of the reaction: 6-demethylsterigmatocystin + S-adenosyl-L-methionine = sterigmatocystin + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl demethylsterigmatocystin methyltransferase activity|O-methyltransferase I|S-adenosyl-L-methionine:6-demethylsterigmatocystin 6-O-methyltransferase activity EC:2.1.1.109|RHEA:11504|MetaCyc:2.1.1.109-RXN molecular_function owl:Class GO:0098839 biolink:NamedThing postsynaptic density membrane The membrane component of the postsynaptic density. This is the region of the postsynaptic membrane in which the population of neurotransmitter receptors involved in synaptic transmission are concentrated. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036466 biolink:NamedThing synaptic vesicle recycling via endosome Synaptic vesicle recycling where vesicles endocytosed via clathrin-coated pits re-acidify and refill with neurotransmitters after passing through an endosomal intermediate. tmpzr1t_l9r_go_relaxed.owl recycling endosome localization within postsynapse bf 2014-06-26T11:07:46Z GO:0099090 biological_process owl:Class GO:0045916 biolink:NamedThing negative regulation of complement activation Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation. tmpzr1t_l9r_go_relaxed.owl down regulation of complement activation|negative regulation of complement cascade|downregulation of complement activation|inhibition of complement activation|down-regulation of complement activation biological_process owl:Class GO:0071242 biolink:NamedThing cellular response to ammonium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to ammonia mah 2009-12-03T02:39:40Z GO:1903718 biological_process owl:Class GO:0060601 biolink:NamedThing lateral sprouting from an epithelium The process in which a branch forms along the side of an epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-14T02:33:01Z biological_process owl:Class GO:1901843 biolink:NamedThing positive regulation of high voltage-gated calcium channel activity Any process that activates or increases the frequency, rate or extent of high voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of high voltage gated calcium channel activity|upregulation of high voltage-gated calcium channel activity|up regulation of high voltage-dependent calcium channel activity|up-regulation of high voltage-dependent calcium channel activity|upregulation of high voltage gated calcium channel activity|up-regulation of high voltage gated calcium channel activity|up-regulation of high voltage-gated calcium channel activity|activation of high voltage-dependent calcium channel activity|upregulation of high voltage-dependent calcium channel activity|activation of high voltage-gated calcium channel activity|up regulation of high voltage-gated calcium channel activity|activation of high voltage gated calcium channel activity|up regulation of high voltage gated calcium channel activity|positive regulation of high voltage-dependent calcium channel activity rl 2013-01-24T19:02:25Z biological_process owl:Class GO:0008331 biolink:NamedThing high voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a high voltage-gated channel. A high voltage-gated channel is a channel whose open state is dependent on high voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl high voltage gated calcium channel activity|high voltage-dependent calcium channel activity|P-type calcium channel|L-type calcium channel|N-type calcium channel|Q-type calcium channel molecular_function owl:Class GO:0021649 biolink:NamedThing vestibulocochlear nerve structural organization The process that contributes to the act of creating the structural organization of the vestibulocochlear nerve. This process pertains to the physical shaping of a rudimentary structure. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea. tmpzr1t_l9r_go_relaxed.owl vestibulocochlear nerve structural organisation|CN VII structural organization biological_process owl:Class GO:0021648 biolink:NamedThing vestibulocochlear nerve morphogenesis The process in which the anatomical structure of the vestibulocochlear nerve is generated and organized. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea. tmpzr1t_l9r_go_relaxed.owl CN VIII morphogenesis biological_process owl:Class GO:0060396 biolink:NamedThing growth hormone receptor signaling pathway The series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl growth hormone receptor signalling pathway|GH receptor signaling pathway|cellular response to growth hormone biological_process owl:Class GO:0072256 biolink:NamedThing metanephric glomerular mesangial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular mesangial cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T04:07:10Z biological_process owl:Class GO:0072254 biolink:NamedThing metanephric glomerular mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T04:04:02Z biological_process owl:Class GO:0060856 biolink:NamedThing establishment of blood-brain barrier Establishment of the barrier between the blood and the brain. The cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl establishment of BBB|establishment of blood/brain barrier dph 2009-08-12T12:12:59Z biological_process owl:Class GO:0007417 biolink:NamedThing central nervous system development The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. tmpzr1t_l9r_go_relaxed.owl CNS development Wikipedia:Neural_development biological_process owl:Class GO:0021821 biolink:NamedThing negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination The process that results in the release of migrating cells from their interaction with radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration. tmpzr1t_l9r_go_relaxed.owl downregulation of cell-glial cell adhesion involved in cerebral cortex lamination|inhibition of cell-glial cell adhesion involved in cerebral cortex lamination|down-regulation of cell-glial cell adhesion involved in cerebral cortex lamination|down regulation of cell-glial cell adhesion involved in cerebral cortex lamination biological_process owl:Class GO:0021819 biolink:NamedThing layer formation in cerebral cortex The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl cerebral cortex lamination biological_process owl:Class GO:1904955 biolink:NamedThing planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation Any Wnt signaling pathway, planar cell polarity pathway that is involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl Wnt-JNK signaling pathway involved in midbrain DA neurogenesis|Wnt-PCP signaling pathway involved in midbrain dopaminergic neuron production|PCP pathway involved in midbrain dopaminergic neuron production|Wnt receptor signalling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt signaling pathway involved in midbrain DA neurogenesis|PCP pathway involved in DA neurogenesis from midbrain floor plate|Wnt-JNK signaling pathway involved in mDA neuron differentiation|Wnt signaling pathway, planar cell polarity pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signalling pathway, planar cell polarity pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signalling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation|Wnt-PCP signaling pathway involved in midbrain dopaminergic neuron differentiation|Wnt receptor signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation|Wnt receptor signaling pathway, planar cell polarity pathway involved in mDA neuron differentiation|PCP pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt-mediated midbrain DA neuron differentiation|Wnt-PCP signaling pathway involved in mDA neuron differentiation|non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt signaling pathway involved in mDA neuron differentiation|Wnt receptor signalling pathway, planar cell polarity pathway involved in midbrain DA neurogenesis|Wnt-PCP signaling pathway involved in midbrain DA neurogenesis|Wnt-activated signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation|Wnt-JNK signaling pathway involved in midbrain dopaminergic neuron production|PCP pathway involved in midbrain DA neurogenesis|Wnt signaling pathway, planar cell polarity pathway involved in mDA neuron differentiation|Wnt-activated signaling pathway, planar cell polarity pathway involved in DA neurogenesis from midbrain floor plate|PCP pathway involved in mDA neuron differentiation|planar cell polarity pathway involved in midbrain dopaminergic neuron production|planar cell polarity pathway involved in DA neurogenesis from midbrain floor plate|Wnt-JNK signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway, planar cell polarity pathway involved in midbrain DA neurogenesis|Wnt receptor signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron production|Wnt-JNK signaling pathway involved in midbrain dopaminergic neuron differentiation|Wnt-activated signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron production|Wnt-activated signaling pathway, planar cell polarity pathway involved in mDA neuron differentiation|Wnt signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt-activated signaling pathway, planar cell polarity pathway involved in midbrain DA neurogenesis|planar cell polarity pathway involved in midbrain DA neurogenesis|Wnt signaling pathway, planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation|Wnt receptor signalling pathway, planar cell polarity pathway involved in mDA neuron differentiation|planar cell polarity pathway involved in mDA neuron differentiation|Wnt-PCP signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt signaling pathway, planar cell polarity pathway involved in midbrain DA neurogenesis|Wnt receptor signaling pathway, planar cell polarity pathway involved in DA neurogenesis from midbrain floor plate bf 2016-02-09T11:04:56Z biological_process owl:Class GO:1904948 biolink:NamedThing midbrain dopaminergic neuron differentiation The process in which a relatively unspecialized cell acquires the specialized features of a midbrain dopaminergic neuron. tmpzr1t_l9r_go_relaxed.owl DA neurogenesis from midbrain floor plate|midbrain dopaminergic neuron production|midbrain DA neurogenesis|mDA neuron differentiation bf 2016-02-04T14:38:10Z biological_process owl:Class GO:1901966 biolink:NamedThing regulation of cellular response to iron ion starvation Any process that modulates the frequency, rate or extent of cellular response to iron ion starvation. tmpzr1t_l9r_go_relaxed.owl al 2013-02-21T11:35:57Z biological_process owl:Class GO:0034442 biolink:NamedThing regulation of lipoprotein oxidation Any process that modulates the frequency, rate or extent of lipoprotein oxidation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042161 biolink:NamedThing lipoprotein oxidation The modification of a lipoprotein by oxidation of one or more amino acids or the lipid group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000316 biolink:NamedThing regulation of T-helper 17 type immune response Any process that modulates the frequency, rate or extent of T-helper 17 type immune response. tmpzr1t_l9r_go_relaxed.owl regulation of Th17 immune response mah 2011-01-18T01:32:26Z biological_process owl:Class GO:0072538 biolink:NamedThing T-helper 17 type immune response An immune response which is associated with resistance to intracellular bacteria with a key role in inflammation and tissue injury. This immune response is associated with pathological autoimmune conditions such as multiple sclerosis, arthritis and psoriasis which is typically orchestrated by the production of particular cytokines by T-helper 17 cells, most notably interleukin-17, IL-21 and IL-22. tmpzr1t_l9r_go_relaxed.owl Th17 immune response mah 2011-01-17T11:13:53Z biological_process owl:Class GO:0048263 biolink:NamedThing determination of dorsal identity Determination of the identity of part of an organism or organ where those parts are of the type that occur in the dorsal region. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl determination of adaxial identity biological_process owl:Class GO:0048262 biolink:NamedThing determination of dorsal/ventral asymmetry Determination of asymmetry from the dorsal to the ventral side; as, the dorsoventral axis. tmpzr1t_l9r_go_relaxed.owl determination of dorsal-ventral asymmetry|determination of dorsoventral asymmetry|determination of adaxial/abaxial asymmetry biological_process owl:Class GO:0097495 biolink:NamedThing H-NS-Hha complex A trimeric protein complex made up of an H-NS homodimer and an Hha monomer. In Enterobacteriaceae, this complex negatively regulates transcription of a range of genes. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-08T14:37:33Z cellular_component owl:Class GO:0015616 biolink:NamedThing DNA translocase activity Generation of movement along a single- or double-stranded DNA molecule, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21612 Note that some gene products that possess DNA translocase activity, such as members of the FtsK/SpoIIIE family, can be fixed in place by interactions with other components of the cell; the relative movement between the protein and DNA bound to it results in movement of the DNA within the cell, often across a membrane. molecular_function owl:Class GO:2000929 biolink:NamedThing positive regulation of cellodextrin catabolic process Any process that activates or increases the frequency, rate or extent of cellodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellodextrin catabolism tt 2011-08-01T12:41:36Z biological_process owl:Class GO:0060114 biolink:NamedThing vestibular receptor cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a vestibular hair cell. tmpzr1t_l9r_go_relaxed.owl vestibular hair cell differentiation biological_process owl:Class GO:0150019 biolink:NamedThing basal dendrite morphogenesis The process in which the anatomical structures of a basal dendrite are generated and organized. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:26:07Z biological_process owl:Class GO:0150018 biolink:NamedThing basal dendrite development The process whose specific outcome is the progression of a basal dendrite over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:09:53Z biological_process owl:Class GO:0036366 biolink:NamedThing transforming growth factor beta3 activation The release of transforming growth factor beta 3 (TGF-beta3) from its latent state. tmpzr1t_l9r_go_relaxed.owl TGFbeta 3 activation|TGFB3 activation|TGF-beta 3 activation bf 2012-09-24T10:16:05Z biological_process owl:Class GO:0032907 biolink:NamedThing transforming growth factor beta3 production The appearance of transforming growth factor-beta3 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TGF-B3 production|transforming growth factor-beta3 production|TGFB3 production biological_process owl:Class GO:0070175 biolink:NamedThing positive regulation of enamel mineralization Any process that activates or increases the frequency, rate or extent of enamel mineralization, the deposition of calcium salts in tooth enamel. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070166 biolink:NamedThing enamel mineralization The process in which calcium salts, mainly carbonated hydroxyapatite, are deposited in tooth enamel. tmpzr1t_l9r_go_relaxed.owl enamel formation biological_process owl:Class GO:0001541 biolink:NamedThing ovarian follicle development The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl follicular phase biological_process owl:Class GO:0099582 biolink:NamedThing neurotransmitter receptor activity involved in regulation of presynaptic cytosolic calcium ion concentration Any neurotransmitter receptor activity that is involved in regulating the concentration of calcium in the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor activity involved in regulation of presynaptic cytosolic calcium levels molecular_function owl:Class GO:0042734 biolink:NamedThing presynaptic membrane A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane. tmpzr1t_l9r_go_relaxed.owl pre-synaptic membrane|presynaptic plasma membrane cellular_component owl:Class GO:0060413 biolink:NamedThing atrial septum morphogenesis The developmental process in which atrial septum is generated and organized. The atrial septum separates the upper chambers (the atria) of the heart from one another. tmpzr1t_l9r_go_relaxed.owl interatrial septum morphogenesis GO:0003287 biological_process owl:Class GO:0003283 biolink:NamedThing atrial septum development The progression of the atrial septum over time, from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:10:38Z biological_process owl:Class GO:0048566 biolink:NamedThing embryonic digestive tract development The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060136 biolink:NamedThing embryonic process involved in female pregnancy A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009790 biolink:NamedThing embryo development The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. tmpzr1t_l9r_go_relaxed.owl embryogenesis and morphogenesis|embryonal development|embryogenesis Wikipedia:Embryogenesis GO:0009795 biological_process owl:Class GO:0010602 biolink:NamedThing regulation of 1-aminocyclopropane-1-carboxylate metabolic process Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018871 biolink:NamedThing 1-aminocyclopropane-1-carboxylate metabolic process The chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants. tmpzr1t_l9r_go_relaxed.owl ACP metabolism|ACP metabolic process|1-aminocyclopropane-1-carboxylate metabolism UM-BBD_pathwayID:acp biological_process owl:Class GO:0021835 biolink:NamedThing chemoattraction involved in embryonic olfactory bulb interneuron precursor migration The creation and reception of signals that result in the migration of interneuron precursors up a concentration gradient towards the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis involved in embryonic olfactory bulb interneuron precursor migration biological_process owl:Class GO:0021831 biolink:NamedThing embryonic olfactory bulb interneuron precursor migration The directed movement of individual interneuron precursors during the embryonic development of the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001154 biolink:NamedThing regulation of glycolytic fermentation to ethanol Any process that modulates the frequency, rate or extent of glucose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl regulation of glucose fermentation to ethanol|regulation of ethanol fermentation mcc 2011-10-27T02:39:00Z biological_process owl:Class GO:0019655 biolink:NamedThing glycolytic fermentation to ethanol The anaerobic chemical reactions and pathways resulting in the breakdown of glucose; it is converted into ethanol and carbon dioxide (CO2), producing two molecules of ATP for each molecule of glucose. tmpzr1t_l9r_go_relaxed.owl glucose catabolic process to ethanol|glucose fermentation to ethanol|ethanol fermentation|alcoholic fermentation Wikipedia:Ethanol_fermentation biological_process owl:Class GO:1904728 biolink:NamedThing positive regulation of replicative senescence Any process that activates or increases the frequency, rate or extent of replicative senescence. tmpzr1t_l9r_go_relaxed.owl activation of replicative senescence|up regulation of replicative senescence|up-regulation of replicative senescence|upregulation of replicative senescence rph 2015-10-14T13:11:37Z biological_process owl:Class GO:0090399 biolink:NamedThing replicative senescence A cell aging process associated with the dismantling of a cell as a response to telomere shortening and/or cellular aging. tmpzr1t_l9r_go_relaxed.owl tb 2011-01-05T02:32:29Z biological_process owl:Class GO:0002496 biolink:NamedThing proteolysis associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein contributing to antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051232 biolink:NamedThing meiotic spindle elongation The lengthening of the distance between poles of the spindle during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl spindle elongation during meiosis biological_process owl:Class GO:0043971 biolink:NamedThing histone H3-K18 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 18 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 acetylation at K18|histone H3K18 acetylation biological_process owl:Class GO:0007431 biolink:NamedThing salivary gland development The process whose specific outcome is the progression of the salivary gland over time, from its formation to the mature structure. Salivary glands include any of the saliva-secreting exocrine glands of the oral cavity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000245 biolink:NamedThing negative regulation of FtsZ-dependent cytokinesis Any process that stops, prevents, or reduces the frequency, rate or extent of Ftsz-dependent cytokinesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of prokaryote-type cytokinesis|negative regulation of prokaryotic fission mah 2010-11-10T02:46:39Z biological_process owl:Class GO:0043093 biolink:NamedThing FtsZ-dependent cytokinesis A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis by binary fission|prokaryote-type cytokinesis|prokaryotic fission Wikipedia:Binary_fission Note that this term is intended for the annotation of prokaryotic gene products. biological_process owl:Class GO:1905115 biolink:NamedThing regulation of lateral attachment of mitotic spindle microtubules to kinetochore Any process that modulates the frequency, rate or extent of lateral attachment of mitotic spindle microtubules to kinetochore. tmpzr1t_l9r_go_relaxed.owl al 2016-04-07T14:25:25Z biological_process owl:Class GO:0099607 biolink:NamedThing lateral attachment of mitotic spindle microtubules to kinetochore The cell cycle process in which sister chromatids become laterally attached to spindle microtubules as part of mitotic metaphase plate congression. Attachment precedes migration along microtubules towards the spindle equator (metaphase plate). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061110 biolink:NamedThing dense core granule biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a dense core granule. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the dense core granule. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-01T09:40:11Z biological_process owl:Class GO:1990156 biolink:NamedThing DnaB-DnaG complex A protein complex containing homohexameric DnaB helicase, and DnaG (a primase). Facilitates the unwinding of double-stranded DNA and the synthesis of RNA primer sequences during DNA replication and repair in Prokaryotes. tmpzr1t_l9r_go_relaxed.owl DnaB-DnaG primosome complex bhm 2013-08-02T09:50:54Z cellular_component owl:Class GO:1990161 biolink:NamedThing DnaB helicase complex A homohexameric protein complex that possesses DNA helicase activity; functions during DNA replication and repair. tmpzr1t_l9r_go_relaxed.owl DnaB hexamer bhm 2013-08-02T15:55:48Z cellular_component owl:Class GO:1905333 biolink:NamedThing regulation of gastric motility Any process that modulates the frequency, rate or extent of gastric motility. tmpzr1t_l9r_go_relaxed.owl als 2016-07-22T09:47:31Z biological_process owl:Class GO:0035482 biolink:NamedThing gastric motility The spontaneous peristaltic movements of the stomach that aid in digestion, moving food through the stomach and out through the pyloric sphincter into the duodenum. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:44:59Z biological_process owl:Class GO:1901630 biolink:NamedThing negative regulation of presynaptic membrane organization Any process that stops, prevents or reduces the frequency, rate or extent of presynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl inhibition of presynaptic membrane organization|negative regulation of pre-synaptic membrane organization|negative regulation of presynaptic membrane organisation|down regulation of presynaptic membrane organization|down-regulation of presynaptic membrane organisation|down-regulation of presynaptic membrane organization|down regulation of presynaptic membrane organisation|inhibition of presynaptic membrane organisation|downregulation of presynaptic membrane organization|downregulation of presynaptic membrane organisation ans 2012-11-15T11:40:36Z biological_process owl:Class GO:0097090 biolink:NamedThing presynaptic membrane organization A process which results in the assembly, arrangement of constituent parts, or disassembly of a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction. tmpzr1t_l9r_go_relaxed.owl pre-synaptic membrane organization|presynaptic membrane organisation Note that 'presynaptic membrane' in this term should not be mistaken with 'presynaptic active zone'. The latter encompasses more than the former, as it also includes the specialized cortical cytoskeletal matrix in the cell cortex of a presynaptic neuron. pr 2011-07-04T01:45:30Z biological_process owl:Class GO:1990689 biolink:NamedThing endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with Golgi cis cisterna membrane The joining of the lipid bilayer membrane around an ERGIC-derived vesicle to the lipid bilayer membrane around the Golgi cis cisterna. Such vesicles include COPII-coated transport vesicles involved in anterograde transport. tmpzr1t_l9r_go_relaxed.owl ERGIC-derived vesicle fusion with cis-Golgi cisterna membrane|ER-Golgi intermediate compartment derived vesicle fusion with cis-Golgi cisterna membrane|ER-Golgi intermediate compartment derived vesicle fusion with Golgi cis cisterna membrane|ERGIC-derived vesicle fusion with Golgi cis cisterna membrane|endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with cis-Golgi cisterna membrane bhm 2015-03-12T09:41:48Z biological_process owl:Class GO:0006888 biolink:NamedThing endoplasmic reticulum to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. tmpzr1t_l9r_go_relaxed.owl anterograde vesicle-mediated transport, endoplasmic reticulum to Golgi|rough endoplasmic reticulum to cis-Golgi transport|rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport|endoplasmic reticulum to Golgi transport|anterograde vesicle-mediated transport, ER to Golgi|rough ER to cis-Golgi transport|rough ER to cis-Golgi vesicle-mediated transport|ER to Golgi vesicle-mediated transport|anterograde (ER to Golgi) transport|anterograde transport, ER to Golgi|anterograde transport, endoplasmic reticulum to Golgi|ER to Golgi transport GO:0048221 biological_process owl:Class GO:0005730 biolink:NamedThing nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nucleolus|NIF_Subcellular:sao1820400233 cellular_component owl:Class GO:1905016 biolink:NamedThing negative regulation of isoleucine-tRNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of isoleucine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of isoleucyl-transfer RNA synthetase activity|inhibition of isoleucyl-tRNA synthetase activity|down-regulation of isoleucine-tRNA ligase activity|down regulation of isoleucine-tRNA ligase activity|down-regulation of isoleucyl-transfer RNA synthetase activity|negative regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|negative regulation of isoleucine-tRNA synthetase activity|downregulation of isoleucyl-tRNA synthetase activity|down-regulation of isoleucine-transfer RNA ligase activity|inhibition of isoleucyl-transfer ribonucleate synthetase activity|down-regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|negative regulation of isoleucyl-transfer ribonucleate synthetase activity|down regulation of isoleucine-transfer RNA ligase activity|negative regulation of isoleucine-transfer RNA ligase activity|negative regulation of isoleucine translase activity|down-regulation of isoleucine translase activity|inhibition of isoleucyl-transfer RNA synthetase activity|down-regulation of isoleucyl-transfer ribonucleate synthetase activity|down-regulation of isoleucyl-tRNA synthetase activity|downregulation of L-isoleucine:tRNAIle ligase (AMP-forming)|inhibition of isoleucine-transfer RNA ligase activity|inhibition of isoleucine translase activity|downregulation of isoleucyl-transfer ribonucleate synthetase activity|negative regulation of isoleucyl-tRNA synthetase activity|inhibition of L-isoleucine:tRNAIle ligase (AMP-forming)|downregulation of isoleucine translase activity|down regulation of isoleucyl-tRNA synthetase activity|down regulation of isoleucine-tRNA synthetase activity|downregulation of isoleucine-transfer RNA ligase activity|downregulation of isoleucine-tRNA ligase activity|downregulation of isoleucine-tRNA synthetase activity|down regulation of isoleucyl-transfer ribonucleate synthetase activity|down regulation of L-isoleucine:tRNAIle ligase (AMP-forming)|down-regulation of isoleucine-tRNA synthetase activity|down regulation of isoleucine translase activity|negative regulation of isoleucyl-transfer RNA synthetase activity|inhibition of isoleucine-tRNA ligase activity|inhibition of isoleucine-tRNA synthetase activity|down regulation of isoleucyl-transfer RNA synthetase activity sl 2016-03-03T19:00:57Z biological_process owl:Class GO:0150051 biolink:NamedThing postsynaptic Golgi apparatus The network of the Golgi apparatus structures located within the postsynapse. tmpzr1t_l9r_go_relaxed.owl Golgi outpost bc 2018-05-08T15:42:56Z cellular_component owl:Class GO:0061910 biolink:NamedThing autophagosome-endosome fusion The process in which an autophagosome fuses with an endosome to create an intermediate autophagic organelle called amphisome. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-29T17:10:43Z biological_process owl:Class GO:0016236 biolink:NamedThing macroautophagy The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded. tmpzr1t_l9r_go_relaxed.owl autophagy Targeted macroautophagy sometimes targets regions of cytoplasm containing non-self, such as virus particles or components (e.g. see PMID:20159618). As this is essentially the same process as macroautophagy that encloses and digests only self, the term autophagy is still used despite the enclosure of some non-self (non-auto) entities. GO:0034262 biological_process owl:Class GO:0098951 biolink:NamedThing intrinsic component of postsynaptic recycling endosome membrane The component of the postsynaptic recycling endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic recycling endosome membrane cellular_component owl:Class GO:0098944 biolink:NamedThing postsynaptic recycling endosome membrane The lipid bilayer surrounding a postsynaptic recycling endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014906 biolink:NamedThing myotube cell development involved in skeletal muscle regeneration The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. This occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014908 biolink:NamedThing myotube differentiation involved in skeletal muscle regeneration The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. This process occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001834 biolink:NamedThing trophectodermal cell proliferation The proliferation of cells in the trophectoderm. tmpzr1t_l9r_go_relaxed.owl trophectoderm cell proliferation See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19', 'TS5, trophectoderm ; EMAP:28' and 'TS6, trophectoderm ; EMAP:39'. biological_process owl:Class GO:0020007 biolink:NamedThing apical complex A group of cytoskeletal structures and associated membrane-bounded organelles found at the anterior end of adult obligate intracellular protozoan parasites in the phylum Apicomplexa. The apical complex is involved in attachment to and penetration of the host cell, and in parasite proliferation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031910 biolink:NamedThing cytostome Stable, specialized structure for the ingestion of food by the cell into phagosomes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cytostome cellular_component owl:Class GO:0021723 biolink:NamedThing medullary reticular formation development The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata. tmpzr1t_l9r_go_relaxed.owl rhombencephalic reticular formation development biological_process owl:Class GO:0019072 biolink:NamedThing viral genome packaging The encapsulation of the viral genome within the capsid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019068 biolink:NamedThing virion assembly A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed. tmpzr1t_l9r_go_relaxed.owl viral particle assembly|bacteriophage assembly|virus assembly|phage assembly|virus particle assembly|virion assembly and maintenance|virion organization|viral assembly GO:0042963 biological_process owl:Class GO:0048259 biolink:NamedThing regulation of receptor-mediated endocytosis Any process that modulates the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport. tmpzr1t_l9r_go_relaxed.owl regulation of receptor mediated endocytosis biological_process owl:Class GO:0035602 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow cell The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow|fibroblast growth factor receptor signalling pathway involved in negative regulation of apoptotic process in bone marrow|FGF receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|FGFR signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow bf 2010-11-15T11:09:20Z biological_process owl:Class GO:0043320 biolink:NamedThing natural killer cell degranulation The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell. tmpzr1t_l9r_go_relaxed.owl natural killer cell granule exocytosis|NK cell granule exocytosis|NK cell degranulation biological_process owl:Class GO:0042267 biolink:NamedThing natural killer cell mediated cytotoxicity The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors. tmpzr1t_l9r_go_relaxed.owl natural killer cell mediated cytolysis|NK cell mediated cytolysis|natural killer cell mediated cell killing|killer activity|NK cell mediated cell killing|NK cell mediated cell death|natural killer-cell mediated cytolysis|NK cell mediated cytotoxicity|natural killer cell mediated cell death Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in induction of apoptosis in the target cell. biological_process owl:Class GO:0071006 biolink:NamedThing U2-type catalytic step 1 spliceosome A spliceosomal complex that is formed by the displacement of the U1 and U4 snRNPs from the precatalytic spliceosome; the U2, U5 and U6 snRNPs remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the U2, and U5 and U6 snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian U2-type spliceosomal complex B2|mammalian U2-type spliceosomal complex B*|GT-AG catalytic step 1 spliceosome|yeast U2-type spliceosomal complex A1|major catalytic step 1 spliceosome|U2-type activated spliceosome mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0004691 biolink:NamedThing cAMP-dependent protein kinase activity cAMP-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl cyclic AMP-dependent protein kinase activity|adenosine 3',5'-cyclophosphate-dependent protein kinase activity|ATP:protein phosphotransferase (cAMP-dependent) activity|PKA C|3',5' cAMP-dependent protein kinase activity|3',5'-cAMP-dependent protein kinase activity|STK22|PKA|protein kinase A activity|AMPK|cAMP-dependent protein kinase, intrinsic catalyst activity Reactome:R-HSA-913451|Reactome:R-HSA-163672|Reactome:R-HSA-5617182|Reactome:R-HSA-5687088|Reactome:R-HSA-5610720|Reactome:R-HSA-5610717|Reactome:R-HSA-432232|Reactome:R-HSA-177275|Reactome:R-HSA-177284|Reactome:R-HSA-5610741|Reactome:R-HSA-5617179|EC:2.7.11.11|Reactome:R-HSA-163773|Reactome:R-HSA-163676|MetaCyc:2.7.11.11-RXN This reaction requires the presence of cAMP. GO:0008602 molecular_function owl:Class GO:0002404 biolink:NamedThing antigen sampling in mucosal-associated lymphoid tissue The process of apical-to-basolateral delivery of soluble and particulate antigens to underlying mucosal-associated lymphoid tissue. tmpzr1t_l9r_go_relaxed.owl antigen transport in mucosal-associated lymphoid tissue|antigen transport in MALT|antigen sampling in MALT biological_process owl:Class GO:0002385 biolink:NamedThing mucosal immune response An immune response taking place in mucosal tissues, including those of the intestinal tract, nasal and upper respiratory tract, and genital tract. tmpzr1t_l9r_go_relaxed.owl immune response in urogenital tract|immune response in MALT|immune response in mucosal-associated lymphoid tissue GO:0002422|GO:0002386 biological_process owl:Class GO:0015343 biolink:NamedThing siderophore transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(out) + H+(out) = siderophore-iron(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl siderophore-iron transmembrane transporter activity|siderochrome-iron transporter activity|siderophore transporter activity|iron-siderophore transporter activity|siderophore-iron transporter activity|siderochrome transporter activity Reactome:R-HSA-1222597 GO:0042927|GO:0015237|GO:0015236 molecular_function owl:Class GO:0044718 biolink:NamedThing siderophore transmembrane transport The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, from one side of a membrane to the other, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl siderophore membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. jl 2012-10-18T13:43:56Z biological_process owl:Class GO:0044386 biolink:NamedThing integral to host endoplasmic reticulum membrane Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. Occurring in a host cell. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-13T04:11:30Z cellular_component owl:Class GO:0044167 biolink:NamedThing host cell endoplasmic reticulum membrane The lipid bilayer surrounding the host cell endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl host endoplasmic reticulum membrane jl 2009-09-04T11:19:23Z cellular_component owl:Class GO:0005231 biolink:NamedThing excitatory extracellular ligand-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts, where channel opening contributes to an increase in membrane potential. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-420980|Reactome:R-HSA-399712|Reactome:R-HSA-432164|Reactome:R-HSA-399711|Reactome:R-HSA-438037 molecular_function owl:Class GO:0038029 biolink:NamedThing epidermal growth factor receptor signaling pathway via MAPK cascade The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands, where the signal is passed on via the MAPKKK cascade. tmpzr1t_l9r_go_relaxed.owl EGFR/MAPK signaling|EGFR signaling pathway via MAPKKK cascade|epidermal growth factor receptor signalling pathway via MAPKKK cascade|EGFR signaling via MAPKKK cascade|epidermal growth factor receptor signaling pathway via MAPKKK cascade bf 2011-09-08T10:53:01Z biological_process owl:Class GO:0086061 biolink:NamedThing voltage-gated sodium channel activity involved in bundle of His cell action potential Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of a bundle of His cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated sodium channel activity involved in bundle of His cardiac muscle cell action potential dph 2011-11-17T12:58:13Z molecular_function owl:Class GO:0060892 biolink:NamedThing limb basal epidermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into an limb basal epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:41:47Z biological_process owl:Class GO:0071828 biolink:NamedThing apolipoprotein E recycling The process in which chylomicron remnant-associated apolipoprotein E is internalized by endocytosis, localized to recycling endosomes and then secreted in association with a high-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl APOE recycling mah 2010-09-08T11:05:15Z biological_process owl:Class GO:0034382 biolink:NamedThing chylomicron remnant clearance The process in which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002269 biolink:NamedThing leukocyte activation involved in inflammatory response A change in the morphology or behavior of a leukocyte resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl immune cell activation during inflammatory response|leukocyte activation during inflammatory response biological_process owl:Class GO:0043002 biolink:NamedThing negative regulation of Golgi to plasma membrane CFTR protein transport Any process that stops, prevents, or reduces the frequency, rate or extent of transport of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl downregulation of Golgi to plasma membrane CFTR protein transport|inhibition of Golgi to plasma membrane CFTR protein transport|down regulation of Golgi to plasma membrane CFTR protein transport|down-regulation of Golgi to plasma membrane CFTR protein transport biological_process owl:Class GO:0043000 biolink:NamedThing Golgi to plasma membrane CFTR protein transport The directed movement of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Golgi to plasma membrane cystic fibrosis transmembrane conductance regulator protein transport biological_process owl:Class GO:0001880 biolink:NamedThing Mullerian duct regression The process in which the Mullerian ducts, primordia of the oviducts, uterus and upper vagina, undergo regression in male embryos. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046661 biolink:NamedThing male sex differentiation The establishment of the sex of a male organism by physical differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022006 biolink:NamedThing zona limitans intrathalamica formation The formation of the narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon. tmpzr1t_l9r_go_relaxed.owl zli biosynthesis|zli formation biological_process owl:Class GO:0021903 biolink:NamedThing rostrocaudal neural tube patterning The process in which the neural tube is divided into specific regions along the rostrocaudal axis. tmpzr1t_l9r_go_relaxed.owl anterior-posterior neural tube patterning biological_process owl:Class GO:0051490 biolink:NamedThing negative regulation of filopodium assembly Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone. tmpzr1t_l9r_go_relaxed.owl negative regulation of filopodia biosynthesis|inhibition of filopodium formation|down regulation of filopodium formation|down-regulation of filopodium formation|negative regulation of filopodium formation|negative regulation of filopodia formation|downregulation of filopodium formation biological_process owl:Class GO:0035474 biolink:NamedThing selective angioblast sprouting The segregation of angioblasts into discrete arterial and venous vessels from one common precursor vessel. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:03:55Z biological_process owl:Class GO:1904134 biolink:NamedThing negative regulation of convergent extension involved in rhombomere morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in rhombomere morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of convergent extension involved in rhombomere morphogenesis|down regulation of convergent extension involved in rhombomere morphogenesis|down-regulation of convergent extension involved in rhombomere morphogenesis|downregulation of convergent extension involved in rhombomere morphogenesis dph 2015-04-10T21:21:18Z biological_process owl:Class GO:1904125 biolink:NamedThing convergent extension involved in rhombomere morphogenesis Any convergent extension that is involved in rhombomere morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:12:50Z biological_process owl:Class GO:2001100 biolink:NamedThing pentasaccharide transport The directed movement of a pentasaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:17:07Z biological_process owl:Class GO:1900361 biolink:NamedThing negative regulation of pentasaccharide transport Any process that stops, prevents or reduces the frequency, rate or extent of pentasaccharide transport. tmpzr1t_l9r_go_relaxed.owl down regulation of pentasaccharide transport|inhibition of pentasaccharide transport|down-regulation of pentasaccharide transport|downregulation of pentasaccharide transport tt 2012-04-06T02:19:36Z biological_process owl:Class GO:0002420 biolink:NamedThing natural killer cell mediated cytotoxicity directed against tumor cell target The directed killing of a tumor cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors. tmpzr1t_l9r_go_relaxed.owl NK cell mediated cytotoxicity directed against tumor cell target Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in induction of apoptosis in the target cell. biological_process owl:Class GO:0035762 biolink:NamedThing dorsal motor nucleus of vagus nerve morphogenesis The process in which the dorsal motor nucleus of the vagus nerve is generated and organized. Morphogenesis pertains to the creation of form. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-29T02:47:18Z biological_process owl:Class GO:1902379 biolink:NamedThing chemoattractant activity involved in axon guidance Any chemoattractant activity that is involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl chemoattractant activity involved in axon growth cone guidance|chemoattractant activity involved in axon pathfinding|chemoattractant activity involved in axon chemotaxis bf 2013-09-02T13:49:35Z molecular_function owl:Class GO:0021575 biolink:NamedThing hindbrain morphogenesis The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions. tmpzr1t_l9r_go_relaxed.owl rhombencephalon morphogenesis biological_process owl:Class GO:0030917 biolink:NamedThing midbrain-hindbrain boundary development The process whose specific outcome is the progression of the midbrain-hindbrain boundary over time, from its formation to the mature structure. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. tmpzr1t_l9r_go_relaxed.owl isthmic organizer development|isthmomesencephalic boundary development|MHB development|midbrain-hindbrain orgainizer development|isthmus development biological_process owl:Class GO:1901310 biolink:NamedThing positive regulation of sterol regulatory element binding protein cleavage Any process that activates or increases the frequency, rate or extent of sterol regulatory element binding protein cleavage. tmpzr1t_l9r_go_relaxed.owl up-regulation of sterol regulatory element binding protein cleavage|upregulation of SREBP cleavage|upregulation of sterol regulatory element binding protein cleavage|positive regulation of SREBP cleavage|activation of sterol regulatory element binding protein cleavage|up regulation of sterol regulatory element binding protein cleavage|up-regulation of SREBP cleavage|up regulation of SREBP cleavage|activation of SREBP cleavage bf 2012-08-21T16:43:40Z biological_process owl:Class GO:0035103 biolink:NamedThing sterol regulatory element binding protein cleavage The proteolytic release of a transcriptionally active sterol regulatory element binding protein (SREBP) from intracellular membranes, freeing it to move to the nucleus to upregulate transcription of target genes, in response to altered levels of one or more lipids. tmpzr1t_l9r_go_relaxed.owl sterol regulatory element binding protein cleavage involved in ER-nuclear sterol response pathway|sterol depletion response, SREBP cleavage|SREBP cleavage GO:0006992 biological_process owl:Class GO:1904135 biolink:NamedThing positive regulation of convergent extension involved in rhombomere morphogenesis Any process that activates or increases the frequency, rate or extent of convergent extension involved in rhombomere morphogenesis. tmpzr1t_l9r_go_relaxed.owl upregulation of convergent extension involved in rhombomere morphogenesis|up regulation of convergent extension involved in rhombomere morphogenesis|activation of convergent extension involved in rhombomere morphogenesis|up-regulation of convergent extension involved in rhombomere morphogenesis dph 2015-04-10T21:21:24Z biological_process owl:Class GO:0000139 biolink:NamedThing Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903519 biolink:NamedThing regulation of mammary gland involution Any process that modulates the frequency, rate or extent of mammary gland involution. tmpzr1t_l9r_go_relaxed.owl dph 2014-10-06T12:01:22Z biological_process owl:Class GO:0010673 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as part of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter|activation of meiosis by positive regulation of transcription from RNA polymerase II promoter|stimulation of meiosis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter, meiotic|upregulation of meiosis by positive regulation of transcription from RNA polymerase II promoter|up regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter dgf 2012-05-01T08:40:11Z GO:1900476 biological_process owl:Class GO:2000853 biolink:NamedThing negative regulation of corticosterone secretion Any process that stops, prevents or reduces the frequency, rate or extent of corticosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:45:43Z biological_process owl:Class GO:0010377 biolink:NamedThing guard cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a stomatal guard cell. Guard cells are located in the leaf epidermis and pairwise surround stomatal pores, which allow CO2 influx for photosynthetic carbon fixation and water loss via transpiration to the atmosphere. tmpzr1t_l9r_go_relaxed.owl stomatal cell fate commitment biological_process owl:Class GO:0010052 biolink:NamedThing guard cell differentiation The process in which a guard mother cell acquires the specialized features of a guard cell. tmpzr1t_l9r_go_relaxed.owl stomatal cell differentiation biological_process owl:Class GO:2000777 biolink:NamedThing positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia Any positive regulation of proteasomal ubiquitin-dependent protein catabolic process that is involved in a cellular response to hypoxia. tmpzr1t_l9r_go_relaxed.owl positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to lowered oxygen tension|positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxic stress mah 2011-06-22T04:07:20Z biological_process owl:Class GO:0071456 biolink:NamedThing cellular response to hypoxia Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. tmpzr1t_l9r_go_relaxed.owl cellular response to hypoxic stress|cellular response to lowered oxygen tension Note that this term should not be confused with 'cellular response to anoxia ; GO:0071454'. Note that in laboratory studies, hypoxia is typically studied at O2 concentrations ranging from 0.1 - 5%. mah 2009-12-16T04:45:20Z biological_process owl:Class GO:0052884 biolink:NamedThing all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity Catalysis of the reaction: H(2)O + all-trans-retinyl palmitate = 11-cis-retinol + H(+) + palmitate. tmpzr1t_l9r_go_relaxed.owl retinol isomerase activity|retinoid isomerohydrolase activity|all-trans-retinol isomerase:hydrolase activity|all-trans-retinyl-palmitate hydrolase activity RHEA:31775|EC:3.1.1.64|Reactome:R-HSA-2453833 molecular_function owl:Class GO:0003796 biolink:NamedThing lysozyme activity Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan. tmpzr1t_l9r_go_relaxed.owl peptidoglycan N-acetylmuramoylhydrolase activity|globulin G1|mucopeptide N-acetylmuramoylhydrolase activity|mucopeptide glucohydrolase activity|L-7001|globulin G|PR1-lysozyme|lysozyme g|muramidase activity|1,4-N-acetylmuramidase activity|N,O-diacetylmuramidase activity MetaCyc:3.2.1.17-RXN|Reactome:R-HSA-8862320|EC:3.2.1.17 molecular_function owl:Class GO:0009048 biolink:NamedThing dosage compensation by inactivation of X chromosome Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex. tmpzr1t_l9r_go_relaxed.owl Barr body formation|chromosome inactivation|X chromosome inactivation Wikipedia:X-inactivation biological_process owl:Class GO:0043611 biolink:NamedThing isoprene metabolic process The chemical reactions and pathways involving isoprene, C5H8. tmpzr1t_l9r_go_relaxed.owl hemiterpene metabolism|hemiterpene metabolic process|2-methyl-1,3-butadiene metabolic process|isoprene metabolism|2-methyl-1,3-butadiene metabolism biological_process owl:Class GO:0017056 biolink:NamedThing structural constituent of nuclear pore The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules. tmpzr1t_l9r_go_relaxed.owl nucleocytoplasmic transporter activity|nuclear pore activity Reactome:R-HSA-192925|Reactome:R-HSA-5252041|Reactome:R-HSA-1176059|Reactome:R-HSA-5661474|Reactome:R-HSA-5578744|Reactome:R-HSA-192627|Reactome:R-HSA-6783483|Reactome:R-HSA-170796 Note that this term is meant to be used for nuclear pore proteins. For importins and exportins, consider 'nuclear import signal receptor activity' or 'nuclear export signal receptor activity', respectively. tb 2015-06-29T08:59:16Z GO:0005487 molecular_function owl:Class GO:0005643 biolink:NamedThing nuclear pore A protein complex providing a discrete opening in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. tmpzr1t_l9r_go_relaxed.owl nucleopore|NPC|nuclear pore membrane protein|nuclear pore complex Wikipedia:Nuclear_pore|NIF_Subcellular:sao220861693 GO:0005644 cellular_component owl:Class GO:0060104 biolink:NamedThing surface coat of collagen and cuticulin-based cuticle extracellular matrix An electron dense, amorphous envelope that comprises the outermost layer of the cuticle. The surface coat is loosely apposed to the epicuticle, has distinct biochemical properties, is synthesized by cells other than the underlying hypodermis, and is labile. In addition to serving as a lubricant to protect against abrasion and dehydration, the surface coat may also play important roles in infection and immune evasion. An example of this component is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl surface coat of collagen and cuticulin-based exoskeleton extracellular matrix cellular_component owl:Class GO:0000779 biolink:NamedThing condensed chromosome, centromeric region The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. tmpzr1t_l9r_go_relaxed.owl condensed chromosome, centromere|condensed chromosome, centric region|condensed chromosome, pericentric region|condensed nuclear chromosome, centromeric region Note that this term can be used in place of the obsolete cellular component term 'centromere ; GO:0005698'. Use with caution because this term refers to a specific region of the chromosome and not a protein complex. GO:0000780 cellular_component owl:Class GO:0000793 biolink:NamedThing condensed chromosome A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. tmpzr1t_l9r_go_relaxed.owl cytoplasmic mitotic chromosome|metaphase chromosome|mitotic chromosome Note that this term can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes an 'open mitosis' in which the nuclear envelope breaks down during mitosis. cellular_component owl:Class GO:0009543 biolink:NamedThing chloroplast thylakoid lumen The cavity enclosed within the chloroplast thylakoid membrane. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009534 biolink:NamedThing chloroplast thylakoid Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015385 biolink:NamedThing sodium:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl pH-dependent sodium:hydrogen antiporter activity|sodium/hydrogen antiporter activity|pH-dependent sodium:proton antiporter activity|sodium:hydrogen exchange activity|sodium:hydrogen exchanger|sodium:hydrogen antiporter activity RHEA:29251|Reactome:R-HSA-5661039|Reactome:R-HSA-426015|Reactome:R-HSA-2872444|Reactome:R-HSA-425965|Reactome:R-HSA-5661086|Reactome:R-HSA-2872463|Reactome:R-HSA-425983|Reactome:R-HSA-425994 GO:0015502 molecular_function owl:Class GO:0036444 biolink:NamedThing calcium import into the mitochondrion A process in which a calcium ion (Ca2+) is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl calcium ion transmembrane import into mitochondrion|mitochondrial calcium uptake|mitochondrial calcium ion import|calcium ion import into mitochondrion bf 2013-10-28T09:32:39Z biological_process owl:Class GO:0022024 biolink:NamedThing BMP signaling pathway involved in forebrain neuron fate commitment A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl bone morphogenetic protein signaling pathway involved in forebrain neuron fate commitment|bone morphogenetic protein signalling pathway involved in forebrain neuron fate commitment|BMP signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:1900505 biolink:NamedThing positive regulation of cellulosome assembly Any process that activates or increases the frequency, rate or extent of cellulosome assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellulosome assembly|upregulation of cellulosome assembly|up regulation of cellulosome assembly|activation of cellulosome assembly tt 2012-05-02T03:58:35Z biological_process owl:Class GO:0044575 biolink:NamedThing cellulosome assembly The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the breakdown of cellulase, hemicellulase and pectin in the plant cell wall. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-19T03:42:36Z biological_process owl:Class GO:0044770 biolink:NamedThing cell cycle phase transition The cell cycle process by which a cell commits to entering the next cell cycle phase. tmpzr1t_l9r_go_relaxed.owl cell cycle transition jl 2013-02-28T12:54:59Z biological_process owl:Class GO:0016791 biolink:NamedThing phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatase|phosphoric monoester hydrolase activity|K-pNPPase activity|ecto-p-nitrophenyl phosphatase activity|4-nitrophenylphosphatase activity|nitrophenyl phosphatase activity|4-nitrophenylphosphate phosphohydrolase activity|p-nitrophenylphosphatase activity|p-nitrophenylphosphate phosphohydrolase activity|PNPPase activity|NPPase activity|para-nitrophenyl phosphatase activity EC:3.1.3.-|Reactome:R-HSA-9636457|Reactome:R-HSA-4419986|MetaCyc:4-NITROPHENYLPHOSPHATASE-RXN GO:0016302|GO:0003869 molecular_function owl:Class GO:0030042 biolink:NamedThing actin filament depolymerization Disassembly of actin filaments by the removal of actin monomers from a filament. tmpzr1t_l9r_go_relaxed.owl actin depolymerization|actin depolymerizing activity biological_process owl:Class GO:0003384 biolink:NamedThing apical constriction involved in gastrulation The actin-mediated process that results in the contraction of the apical end of a polarized columnar epithelial cell, contributing to the process of gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T07:35:38Z biological_process owl:Class GO:0007369 biolink:NamedThing gastrulation A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Gastrulation biological_process owl:Class GO:0006907 biolink:NamedThing pinocytosis An endocytosis process that results in the uptake of liquid material by cells from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, called pinosomes, formed by invagination of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl single-organism pinocytosis|fluid-phase endocytosis|clathrin-independent pinocytosis Wikipedia:Pinocytosis jl 2013-12-02T14:14:38Z GO:0006908|GO:1902536 biological_process owl:Class GO:0060529 biolink:NamedThing squamous basal epithelial stem cell differentiation involved in prostate gland acinus development The process in which a relatively unspecialized epithelial cell acquires specialized features of a squamous basal epithelial stem cell of the prostate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060525 biolink:NamedThing prostate glandular acinus development The progression of a glandular acinus of the prostate gland over time, from its initial formation to the mature structure. The glandular acini are the saclike structures of the gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021584 biolink:NamedThing pons formation The process that gives rise to the pons. This process pertains to the initial formation of a structure from unspecified parts. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021583 biolink:NamedThing pons morphogenesis The process in which the anatomical structure of the pons is generated and organized. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021872 biolink:NamedThing forebrain generation of neurons The process in which nerve cells are generated in the forebrain. This includes the production of neuroblasts from and their differentiation into neurons. tmpzr1t_l9r_go_relaxed.owl generation of neurons in forebrain biological_process owl:Class GO:0140537 biolink:NamedThing transcription regulator activator activity A molecular function regulator that increases the activity of a transcription regulator via direct binding and/or post-translational modification. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16132 Usage guidance: transcription regulator activators bind to a transcription regulator to allow it to reach the chromatin or to contact other transcriptional regulators. This activity does not occur at the promoter. For activities that do occur at the promoter, consider GO:0001216 ; DNA-binding transcription activator activity or GO:0003713; transcription coactivator activity; those activities respectively bind DNA themselves or positively regulate a transcription regulator when it is located at the chromatin. pg 2020-11-03T14:04:59Z molecular_function owl:Class GO:0140395 biolink:NamedThing averantin hydroxylase activity Catalyzes the reaction: (1'S)-averantin + [reduced NADPH--hemoprotein reductase] + O(2) <=> (1'S,5'S)-5'-hydroxyaverantin + [oxidized NADPH--hemoprotein reductase] + H(2)O. Involved in aflatoxin biosynthesis. tmpzr1t_l9r_go_relaxed.owl RHEA:35575|MetaCyc:RXN-9482|EC:1.14.14.116 pg 2019-11-29T08:48:23Z molecular_function owl:Class GO:0072273 biolink:NamedThing metanephric nephron morphogenesis The process in which the anatomical structures of the metanephric nephron are generated and organized. A metanephric nephron is the functional unit of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T03:33:19Z biological_process owl:Class GO:0150140 biolink:NamedThing regulation of CD86 production Any process that modulates the frequency, rate or extent of CD86 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of CD86 biosynthetic process bc 2019-12-08T09:31:00Z biological_process owl:Class GO:0035781 biolink:NamedThing CD86 biosynthetic process The chemical reactions and pathways resulting in the formation of CD86, a CD marker that occurs on antigen presenting cells that provides co-stimulatory signals necessary for T cell activation and survival. tmpzr1t_l9r_go_relaxed.owl CD86 anabolism|CD86 biosynthesis|CD86 formation|CD86 synthesis bf 2011-04-04T11:20:40Z biological_process owl:Class GO:1905856 biolink:NamedThing negative regulation of pentose-phosphate shunt Any process that stops, prevents or reduces the frequency, rate or extent of pentose-phosphate shunt. tmpzr1t_l9r_go_relaxed.owl vw 2017-01-23T14:00:18Z biological_process owl:Class GO:0006098 biolink:NamedThing pentose-phosphate shunt The metabolic process in which glucose-6-phosphate is oxidized to form carbon dioxide (CO2) and ribulose 5-phosphate, coupled to reduction of NADP+ to NADPH; ribulose 5-P then enters a series of reactions that can yield biosynthetic precursors (ribose-5-phosphate and erythrose-4-phosphate) and glycolytic intermediates (fructose-6-phosphate and glyceraldehyde-3-phosphate). tmpzr1t_l9r_go_relaxed.owl pentose phosphate shunt|pentose phosphate pathway|hexose monophosphate pathway|pentose-phosphate pathway Wikipedia:Pentose_phosphate_pathway|Reactome:R-HSA-71336|KEGG_PATHWAY:00030|MetaCyc:PENTOSE-P-PWY biological_process owl:Class GO:0072766 biolink:NamedThing centromere clustering at the mitotic interphase nuclear envelope The process in which chromatin, or kinetochores are anchored to the nuclear envelope. This process involves the microtubule cytoskeleton, and nuclear tethering factors and is responsible for the Rabl-like configuration of chromosomes in the interphase nuclei. tmpzr1t_l9r_go_relaxed.owl centromere-SPB clustering|kinetochore clustering at the old mitotic spindle pole body|kinetochore clustering at spindle pole body|centromere clustering at the nuclear periphery|centromere clustering at the mitotic nuclear envelope|rabl configuration|kinetochore localization at spindle pole body|kinetochore clustering at SPB https://github.com/geneontology/go-ontology/issues/19227|https://github.com/geneontology/go-ontology/issues/20122 mah 2012-11-21T13:32:22Z biological_process owl:Class GO:0070591 biolink:NamedThing ascospore wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of an ascospore wall. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-28T01:12:11Z biological_process owl:Class GO:0030437 biolink:NamedThing ascospore formation The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota). tmpzr1t_l9r_go_relaxed.owl spore formation|sporulation|ascospore biosynthesis Note that ascospores and asci are separate biological structures. The ascus is the structure that contain the ascospores, but the development of the ascus is a different process than the formation of the ascospores themselves; for instance, some mutations affect sporulation without affecting ascus development. For this reason, GO:0030437 ascospore formation and GO:0075317 ascus development are different terms and are not linked. GO:0007151 biological_process owl:Class GO:2000090 biolink:NamedThing regulation of mesonephric glomerular mesangial cell proliferation Any process that modulates the frequency, rate or extent of mesonephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:10:28Z biological_process owl:Class GO:0120272 biolink:NamedThing positive regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts Any process that activates or increases the frequency, rate or extent of degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18757 krc 2020-10-08T21:09:03Z biological_process owl:Class GO:0033621 biolink:NamedThing nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts The chemical reactions and pathways resulting in the selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. tmpzr1t_l9r_go_relaxed.owl degradation of meiosis-specific transcripts|mRNA breakdown, meiosis-specific transcripts|nuclear mRNA catabolic process, meiosis-specific transcripts|mRNA catabolism, meiosis-specific transcripts|mRNA degradation, meiosis-specific transcripts Note that it is speculated that higher eukaryotic YTH-family protein may be involved in similar mechanisms to supress gene regulation during gametogenesis or general silencing. biological_process owl:Class GO:0086063 biolink:NamedThing voltage-gated sodium channel activity involved in SA node cell action potential Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of an SA node cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated sodium channel activity involved in SAN cardiac muscle cell action potential|voltage-gated sodium channel activity involved in sinus node cardiac muscle cell action potential|voltage-gated sodium channel activity involved in sinoatrial node cardiac muscle cell action potential|voltage-gated sodium channel activity involved in SA node cardiac muscle cell action potential dph 2011-11-17T01:53:08Z molecular_function owl:Class GO:0009960 biolink:NamedThing endosperm development The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902281 biolink:NamedThing negative regulation of RNA helicase activity Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent RNA helicase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of ATP-dependent RNA helicase activity|down regulation of ATP-dependent RNA helicase activity|negative regulation of ATP-dependent RNA helicase activity|inhibition of ATP-dependent RNA helicase activity|downregulation of ATP-dependent RNA helicase activity rb 2013-07-03T18:05:25Z biological_process owl:Class GO:2001161 biolink:NamedThing negative regulation of histone H3-K79 methylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K79 methylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of histone lysine H3 K79 methylation|negative regulation of histone H3 K79 methylation|negative regulation of histone H3K79me se 2011-10-25T10:27:05Z biological_process owl:Class GO:0034729 biolink:NamedThing histone H3-K79 methylation The modification of histone H3 by addition of a methyl group to lysine at position 79 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K79me|histone H3 K79 methylation|histone lysine H3 K79 methylation biological_process owl:Class GO:1903754 biolink:NamedThing cortical microtubule plus-end The plus-end of a cortical microtubule. tmpzr1t_l9r_go_relaxed.owl cortical microtubule plus end jl 2014-12-16T15:41:38Z cellular_component owl:Class GO:0061763 biolink:NamedThing multivesicular body-lysosome fusion The organelle membrane fusion process in which the membrane of a multivesicular body fuses with a lysosome to create a hybrid organelle. tmpzr1t_l9r_go_relaxed.owl fusion of multivesicular body to lysosome|MVB-lysosome fusion|fusion of MVB to lysosome dph 2016-04-15T07:12:40Z biological_process owl:Class GO:1903012 biolink:NamedThing positive regulation of bone development Any process that activates or increases the frequency, rate or extent of bone development. tmpzr1t_l9r_go_relaxed.owl activation of bone development|up-regulation of bone development|upregulation of bone development|up regulation of bone development mr 2014-05-13T22:42:06Z biological_process owl:Class GO:0060348 biolink:NamedThing bone development The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905864 biolink:NamedThing regulation of Atg1/ULK1 kinase complex assembly Any process that modulates the frequency, rate or extent of Atg1/ULK1 kinase complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of ULK1 signaling complex assembly|regulation of ULK1-ATG13-FIP200 complex assembly|regulation of ATG1/ULK1 kinase complex formation|regulation of ULK1-ATG13-RB1CC1 complex formation|regulation of ULK1 signaling complex formation|regulation of ATG1 kinase complex formation|regulation of ATG1-ATG13 complex formation|regulation of Atg1p signalling complex formation|regulation of ULK1-ATG13-RB1CC1 complex assembly|regulation of ULK1-ATG13-FIP200 complex formation|regulation of ATG1/ULK1 signaling complex formation|regulation of ATG1-ATG13 complex assembly|regulation of Atg1p signalling complex assembly|regulation of ATG1/ULK1 signaling complex assembly|regulation of ATG1 kinase complex assembly pr 2017-01-26T13:23:26Z biological_process owl:Class GO:1904745 biolink:NamedThing Atg1/ULK1 kinase complex assembly The aggregation, arrangement and bonding together of a set of components to form an Atg1/UKL1 kinase complex. tmpzr1t_l9r_go_relaxed.owl Atg1p signalling complex assembly|ULK1-ATG13-FIP200 complex formation|ATG1-ATG13 complex formation|ULK1-ATG13-FIP200 complex assembly|Atg1p signalling complex formation|ULK1 signaling complex assembly|ATG1-ATG13 complex assembly|ATG1/ULK1 signaling complex formation|ULK1 signaling complex formation|ATG1/ULK1 kinase complex formation|ATG1 kinase complex formation|ATG1 kinase complex assembly|ULK1-ATG13-RB1CC1 complex formation|ULK1-ATG13-RB1CC1 complex assembly|ATG1/ULK1 signaling complex assembly dph 2015-10-19T12:33:08Z biological_process owl:Class GO:1901082 biolink:NamedThing positive regulation of relaxation of smooth muscle Any process that activates or increases the frequency, rate or extent of relaxation of smooth muscle. tmpzr1t_l9r_go_relaxed.owl upregulation of smooth muscle relaxation|positive regulation of smooth muscle relaxation|activation of smooth muscle relaxation|upregulation of relaxation of smooth muscle|up-regulation of relaxation of smooth muscle|up regulation of smooth muscle relaxation|up-regulation of smooth muscle relaxation|up regulation of relaxation of smooth muscle|activation of relaxation of smooth muscle jl 2012-07-04T10:45:39Z biological_process owl:Class GO:0005632 biolink:NamedThing inner layer of spore wall Either of the two innermost layers of the spore wall, as described in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005619 biolink:NamedThing ascospore wall The specialized cell wall of the ascospore (spore), which is the product of meiotic division. Examples of this component are found in Fungi. tmpzr1t_l9r_go_relaxed.owl fungal-type spore wall cellular_component owl:Class GO:0048344 biolink:NamedThing paraxial mesodermal cell fate determination The process in which a cell becomes capable of differentiating autonomously into a paraxial mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048343 biolink:NamedThing paraxial mesodermal cell fate commitment The process in which a cell becomes committed to become a paraxial mesoderm cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902648 biolink:NamedThing positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process Any process that activates or increases the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism di 2014-01-21T17:58:15Z biological_process owl:Class GO:0036369 biolink:NamedThing transcription factor catabolic process The chemical reactions and pathways resulting in the breakdown of a sequence-specific DNA-binding transcription factor by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl sequence-specific DNA binding transcription factor catabolic process|transcription factor breakdown|proteasome-mediated transcription factor catabolism|transcription factor catabolism|transcription factor degradation bf 2012-10-05T10:53:55Z biological_process owl:Class GO:0005839 biolink:NamedThing proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. tmpzr1t_l9r_go_relaxed.owl 20S proteasome|macropain|20S core complex|PA28gamma-20S proteasome GO:0000503 cellular_component owl:Class GO:0061329 biolink:NamedThing Malpighian tubule principal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule principal cell. A Malpighian tubule principal cell is an epithelial secretory cell that transports cations into the lumen of the tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T01:26:33Z biological_process owl:Class GO:0000785 biolink:NamedThing chromatin The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. tmpzr1t_l9r_go_relaxed.owl chromosome scaffold|cytoplasmic chromatin|nuclear chromatin NIF_Subcellular:sao1615953555 Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore. GO:0005717|GO:0000789|GO:0000790 cellular_component owl:Class GO:1903769 biolink:NamedThing negative regulation of cell proliferation in bone marrow Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation in bone marrow. tmpzr1t_l9r_go_relaxed.owl inhibition of cell proliferation in bone marrow|down-regulation of cell proliferation in bone marrow|down-regulation of bone marrow cell proliferation|down regulation of bone marrow cell proliferation|downregulation of bone marrow cell proliferation|inhibition of bone marrow cell proliferation|down regulation of cell proliferation in bone marrow|negative regulation of bone marrow cell proliferation|downregulation of cell proliferation in bone marrow sl 2014-12-29T19:46:26Z biological_process owl:Class GO:0071838 biolink:NamedThing cell proliferation in bone marrow The multiplication or reproduction of cells, resulting in the expansion of a cell population in the bone marrow. tmpzr1t_l9r_go_relaxed.owl bone marrow cell proliferation mah 2010-09-10T12:15:41Z biological_process owl:Class GO:0007392 biolink:NamedThing initiation of dorsal closure Events that occur at the start of dorsal closure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010206 biolink:NamedThing photosystem II repair Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009765 biolink:NamedThing photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. tmpzr1t_l9r_go_relaxed.owl energy dissipation biological_process owl:Class GO:0003215 biolink:NamedThing cardiac right ventricle morphogenesis The process in which the right cardiac ventricle is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:50:57Z biological_process owl:Class GO:0004708 biolink:NamedThing MAP kinase kinase activity Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate. tmpzr1t_l9r_go_relaxed.owl MEK2|MAP2K|MKK7|mitogen-activated protein kinase kinase activity|MEK1|MAPK activator activity|MAP kinase kinase 7 activity|STK27|ERK activator kinase activity|MAPKK activity|MKK4|MAPKK1|MAP kinase or ERK kinase activity|MKK|ATP:protein phosphotransferase (MAPKKK-activated) activity|MAP kinase kinase 4 activity|MAPKK|MKK2|MEK activity|MKK6 Reactome:R-HSA-1247960|Reactome:R-HSA-3238999|Reactome:R-HSA-448951|EC:2.7.12.2|Reactome:R-HSA-450333|MetaCyc:2.7.12.2-RXN|Reactome:R-HSA-5218804 molecular_function owl:Class GO:1990691 biolink:NamedThing cis-Golgi-derived vesicle fusion with Golgi medial cisterna membrane The joining of the lipid bilayer membrane around a cis-Golgi-derived vesicle to the lipid bilayer membrane around the medial-Golgi cisterna. Vesicles are involved in anterograde transport. tmpzr1t_l9r_go_relaxed.owl cis-Golgi-derived vesicle fusion with medial-Golgi cisterna membrane bhm 2015-03-12T09:51:01Z biological_process owl:Class GO:0048219 biolink:NamedThing inter-Golgi cisterna vesicle-mediated transport The directed movement of substances from one Golgi cisterna to another, mediated by small transport vesicles. tmpzr1t_l9r_go_relaxed.owl inter-Golgi cisterna transport biological_process owl:Class GO:0002548 biolink:NamedThing monocyte chemotaxis The movement of a monocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905759 biolink:NamedThing post-anaphase array microtubule Any microtubule that is part of a post-anaphase microtubule array. tmpzr1t_l9r_go_relaxed.owl microtubulus of PAA|microtubuli of post-anaphase microtubule array|microtubule of post-anaphase array|microtubulus of post-anaphase array|microtubule of post-anaphase microtubule array|microtubuli of PAA|neurotubule of PAA|neurotubule of post-anaphase microtubule array|microtubulus of post-anaphase microtubule array|microtubule of PAA|neurotubule of post-anaphase array|microtubuli of post-anaphase array dos 2016-12-12T18:36:53Z cellular_component owl:Class GO:1990295 biolink:NamedThing post-anaphase microtubule array A cytoskeletal part that consists of an array of microtubules and associated molecules that forms at the end of anaphase, and in which microtubules are nucleated from an equatorial microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl post-anaphase array|PAA The best-characterized example is found in the fission yeast Schizosaccharomyces pombe. The eMTOC is cortical, but the post-anaphase array microtubules are not exclusively cortical. mah 2014-02-20T13:54:23Z cellular_component owl:Class GO:0140463 biolink:NamedThing chromatin-protein adaptor The binding activity of a molecule that brings together a protein or a protein complex with a nucleosome, to establish or maintain the chromatin localization of the protein, or protein complex. tmpzr1t_l9r_go_relaxed.owl chromatin adaptor|chromatin recruitment|chromatin adaptor activity|protein-chromatin adaptor activity|chromatin receptor https://github.com/geneontology/go-ontology/issues/17064 pg 2020-05-08T12:31:39Z molecular_function owl:Class GO:0003682 biolink:NamedThing chromatin binding Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. tmpzr1t_l9r_go_relaxed.owl microtubule/chromatin interaction|lamin/chromatin binding|nuclear membrane vesicle binding to chromatin molecular_function owl:Class GO:1901296 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment Any process that stops, prevents or reduces the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment. tmpzr1t_l9r_go_relaxed.owl downregulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|negative regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment|down regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|inhibition of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|downregulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|down regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|down-regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|inhibition of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|negative regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|down-regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment vk 2012-08-21T09:06:52Z biological_process owl:Class GO:0090313 biolink:NamedThing regulation of protein targeting to membrane Any process that modulates the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-16T03:42:22Z biological_process owl:Class GO:0006612 biolink:NamedThing protein targeting to membrane The process of directing proteins towards a membrane, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl protein membrane targeting|protein-membrane targeting biological_process owl:Class GO:0031138 biolink:NamedThing negative regulation of conjugation with cellular fusion Any process that decreases the rate or frequency of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl inhibition of conjugation with cellular fusion|downregulation of conjugation with cellular fusion|down-regulation of conjugation with cellular fusion|down regulation of conjugation with cellular fusion biological_process owl:Class GO:0000747 biolink:NamedThing conjugation with cellular fusion A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl cell fusion|mating GO:0030477|GO:0007333|GO:0007322|GO:0030461 biological_process owl:Class GO:1905612 biolink:NamedThing positive regulation of mRNA cap binding Any process that activates or increases the frequency, rate or extent of mRNA cap binding. tmpzr1t_l9r_go_relaxed.owl up regulation of mRNA cap binding|activation of mRNA cap binding|upregulation of mRNA cap binding|up-regulation of mRNA cap binding bc 2016-10-28T11:27:43Z biological_process owl:Class GO:0098578 biolink:NamedThing condensed chromatin of inactivated sex chromosome A condensed form of chromatin that is associated with an inactivated sex chromosome and which is responsible for its inactivation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098577 biolink:NamedThing inactive sex chromosome A sex chromosome that has been inactivated. tmpzr1t_l9r_go_relaxed.owl inactivated sex chromosome cellular_component owl:Class GO:0004879 biolink:NamedThing nuclear receptor activity A DNA-binding transcription factor activity regulated by binding to a ligand that modulates the transcription of specific gene sets transcribed by RNA polymerase II. Nuclear receptor ligands are usually lipid-based (such as a steroid hormone) and the binding of the ligand to its receptor often occurs in the cytoplasm, which leads to its tranlocation to the nucleus. tmpzr1t_l9r_go_relaxed.owl ligand-dependent nuclear receptor activity|RXR|vitamin A receptor activity|RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding|estrogen nuclear receptor activity|androgen receptor activity|retinoic acid receptor activity|calcitriol receptor activity|vitamin D receptor activity|thyroid hormone receptor activity|RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding|1,25-(OH)2D3 receptor activity|ecdysteroid hormone receptor activity|nuclear hormone receptor|RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding|juvenile hormone receptor activity|retinoid-X receptor activity|ligand-dependent transcription factor activity|9-cis retinoic acid receptor activity|vitamin D3 receptor activity|ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity|glucocorticoid receptor activity https://github.com/geneontology/go-ontology/issues/20253|https://github.com/geneontology/go-ontology/issues/19518 Usage guidance: Nuclear receptors are a protein family defined by the presence of a C4-type zinc finger DNA-binding domain and a ligand binding domain. For nuclear receptors, the DNA binding motif is most often referred to as a response element. GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'GO:0030374 ; nuclear receptor transcription coactivator activity' or GO:0140536 ; nuclear corepressor activity. GO:0004886|GO:0004884|GO:0038052|GO:0038050|GO:0004882|GO:0003708|GO:0004880|GO:0038051|GO:0008434|GO:0004887 molecular_function owl:Class GO:0044576 biolink:NamedThing pentose catabolic process to ethanol The anaerobic chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbons, where one of the resulting products is ethanol. tmpzr1t_l9r_go_relaxed.owl pentose catabolism to ethanol jl 2012-04-19T03:46:37Z biological_process owl:Class GO:0031020 biolink:NamedThing plastid mRNA editing complex An mRNA editing complex found in a plastid. tmpzr1t_l9r_go_relaxed.owl plastid editosome cellular_component owl:Class GO:0072035 biolink:NamedThing pre-tubular aggregate formation The cell adhesion process in which mesenchyme cells adhere to one another in the initial stages of the formation of the pre-tubular aggregate, the earliest recognizable structure of the kidney. tmpzr1t_l9r_go_relaxed.owl mesenchymal cell condensation involved in renal vesicle formation|nephron epithelium formation mah 2010-01-25T03:03:10Z biological_process owl:Class GO:0072033 biolink:NamedThing renal vesicle formation The developmental process pertaining to the initial formation of the renal vesicle from condensed mesenchymal cells. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl nephron epithelium formation mah 2010-01-25T02:57:03Z biological_process owl:Class GO:0044280 biolink:NamedThing subplasmalemmal coating Electron dense material observed coating the cytoplasmic face of the plasma membrane in certain regions of a neuron, e.g., the axon initial segment; the nodal membrane at the Node of Ranvier. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1938587839 jl 2010-01-14T03:58:38Z cellular_component owl:Class GO:0031234 biolink:NamedThing extrinsic component of cytoplasmic side of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to internal side of plasma membrane|extrinsic to cytoplasmic side of plasma membrane|extrinsic to internal leaflet of plasma membrane https://github.com/geneontology/go-ontology/issues/22186 Consider also annotating to 'cell cortex ; GO:0005938'. cellular_component owl:Class GO:0015117 biolink:NamedThing thiosulfate transmembrane transporter activity Enables the transfer of thiosulfate ions, S2O3(2-), from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl thiosulphate transporter activity|thiosulfate permease activity RHEA:32807 molecular_function owl:Class GO:0015709 biolink:NamedThing thiosulfate transport The directed movement of thiosulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl thiosulphate transport biological_process owl:Class GO:0070227 biolink:NamedThing lymphocyte apoptotic process Any apoptotic process in a lymphocyte, a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. tmpzr1t_l9r_go_relaxed.owl lymphocyte apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). biological_process owl:Class GO:0003167 biolink:NamedThing atrioventricular bundle cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the atrioventricular bundle. These cells are specialized cardiomyocytes that transmit signals from the AV node to the cardiac Purkinje fibers. tmpzr1t_l9r_go_relaxed.owl AV bundle cell differentiation dph 2009-10-01T02:48:23Z biological_process owl:Class GO:0003166 biolink:NamedThing bundle of His development The process whose specific outcome is the progression of the bundle of His over time, from its formation to the mature structure. The bundle of His is part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers. tmpzr1t_l9r_go_relaxed.owl atrioventricular bundle development dph 2009-10-01T02:08:43Z biological_process owl:Class GO:1901918 biolink:NamedThing negative regulation of exoribonuclease activity Any process that stops, prevents or reduces the frequency, rate or extent of exoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl down regulation of exoribonuclease activity|down-regulation of exoribonuclease activity|inhibition of exoribonuclease activity|downregulation of exoribonuclease activity rb 2013-02-15T00:58:03Z biological_process owl:Class GO:0004532 biolink:NamedThing exoribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-429961 molecular_function owl:Class GO:0018024 biolink:NamedThing histone-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. tmpzr1t_l9r_go_relaxed.owl histone H1-specific S-adenosylmethionine:protein-lysine N-methyltransferase activity|S-adenosyl-L-methionine:histone-L-lysine N6-methyltransferase activity|protein methyltransferase II activity|S-adenosyl-L-methionine:histone-L-lysine 6-N-methyltransferase activity|protein methylase 3 activity|protein methylase III activity|protein (lysine) methyltransferase activity|histone-lysine N-methylase activity Reactome:R-HSA-5638333|Reactome:R-HSA-5649801|MetaCyc:HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN|Reactome:R-HSA-3788748|Reactome:R-HSA-5651654|Reactome:R-HSA-5638332|Reactome:R-HSA-5423038|RESID:AA0074|RESID:AA0075|Reactome:R-HSA-5634729|Reactome:R-HSA-5649799|Reactome:R-HSA-5638141|Reactome:R-HSA-5637686|Reactome:R-HSA-5649800|Reactome:R-HSA-5638157|Reactome:R-HSA-5649802|RHEA:10024|Reactome:R-HSA-5651657|Reactome:R-HSA-4827382|RESID:AA0076|Reactome:R-HSA-5634750|Reactome:R-HSA-5159245|EC:2.1.1.354|Reactome:R-HSA-5649764|Reactome:R-HSA-5244692|Reactome:R-HSA-3788745|Reactome:R-HSA-5634802|Reactome:R-HSA-4827383 molecular_function owl:Class GO:0019253 biolink:NamedThing reductive pentose-phosphate cycle The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl C3 photosynthesis|Calvin cycle MetaCyc:CALVIN-PWY See also the molecular function term 'ribulose-bisphosphate carboxylase activity ; GO:0016984'. biological_process owl:Class GO:0015977 biolink:NamedThing carbon fixation A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates). tmpzr1t_l9r_go_relaxed.owl carbon dioxide fixation|autotrophy|autotrophic CO2 fixation pathway|autotrophic CO2 fixation Wikipedia:Carbon_fixation biological_process owl:Class GO:0035991 biolink:NamedThing nitric oxide sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl NO sensor activity bf 2011-08-26T04:32:16Z molecular_function owl:Class GO:0071731 biolink:NamedThing response to nitric oxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-17T04:03:38Z biological_process owl:Class GO:1902774 biolink:NamedThing late endosome to lysosome transport The directed movement of substances from late endosome to lysosome. tmpzr1t_l9r_go_relaxed.owl prevacuolar compartment to lysosome transport an example of this is snapin in mouse (Q9Z266) in PMID:20920792 inferred from mutant phenotype pad 2014-03-17T16:32:36Z biological_process owl:Class GO:1905678 biolink:NamedThing negative regulation of adaptive immune effector response Any process that stops, prevents or reduces the frequency, rate or extent of adaptive immune effector response. tmpzr1t_l9r_go_relaxed.owl inhibition of adaptive immune effector response|down-regulation of adaptive immune effector response|downregulation of adaptive immune effector response|down regulation of adaptive immune effector response tb 2016-11-11T22:25:05Z biological_process owl:Class GO:0090718 biolink:NamedThing adaptive immune effector response An adaptive immune response that involves one or more immune effector processes and takes place during the effector phase of the adaptive immune response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:37:26Z biological_process owl:Class GO:0070918 biolink:NamedThing production of small RNA involved in gene silencing by RNA The process in which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. RNA cleavage is catalyzed by a Dicer endonuclease. tmpzr1t_l9r_go_relaxed.owl gene silencing by RNA, production of guide RNA|gene silencing by RNA, production of small RNA mah 2009-09-11T03:32:19Z biological_process owl:Class GO:0031047 biolink:NamedThing gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes. tmpzr1t_l9r_go_relaxed.owl RNA-mediated gene silencing https://github.com/geneontology/go-ontology/issues/22202 biological_process owl:Class GO:2000217 biolink:NamedThing regulation of invasive growth in response to glucose limitation Any process that modulates the frequency, rate or extent of invasive growth in response to glucose limitation. tmpzr1t_l9r_go_relaxed.owl regulation of colony morphology mah 2010-11-03T04:35:56Z biological_process owl:Class GO:0001403 biolink:NamedThing invasive growth in response to glucose limitation A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl colony morphology Note that this term should not be used to describe the invasion of host tissues by pathogenic organisms, which is described by the biological process term 'entry into host ; GO:0044409', nor should it be used to describe growth of diseased cells of an organism into the surrounding normal tissue, which is outside of the scope of GO. biological_process owl:Class GO:0010525 biolink:NamedThing regulation of transposition, RNA-mediated Any process that modulates the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990716 biolink:NamedThing axonemal central apparatus Part of the 9+2 axoneme, that occurs in most motile cilia, consisting of the pair of two single central microtubules and their associated structures which include the central pair projections, the central pair bridges linking the two tubules, and the central pair caps which are attached to the distal or plus ends of the microtubules. tmpzr1t_l9r_go_relaxed.owl krc 2015-03-27T22:33:23Z cellular_component owl:Class GO:0048382 biolink:NamedThing mesendoderm development The process whose specific outcome is the progression of the mesendoderm over time, from its formation to the mature structure. In animal embryos, mesendoderm development gives rise to both mesoderm and endoderm tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110030 biolink:NamedThing regulation of G2/MI transition of meiotic cell cycle Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to MI phase of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-12T19:02:19Z biological_process owl:Class GO:0035599 biolink:NamedThing aspartic acid methylthiotransferase activity Catalysis of the methylthiolation (-SCH3 addition) of the beta-carbon of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0232 Note that peptidyl-L-beta-methylthioaspartic acid is typical of bacterial ribosomal protein S12. bf 2010-11-12T01:31:23Z molecular_function owl:Class GO:1905643 biolink:NamedThing positive regulation of DNA methylation Any process that activates or increases the frequency, rate or extent of DNA methylation. tmpzr1t_l9r_go_relaxed.owl activation of DNA methylation|up-regulation of DNA methylation|upregulation of DNA methylation|up regulation of DNA methylation bc 2016-11-04T16:43:22Z biological_process owl:Class GO:0006306 biolink:NamedThing DNA methylation The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. tmpzr1t_l9r_go_relaxed.owl Wikipedia:DNA_methylation biological_process owl:Class GO:0044017 biolink:NamedThing histone acetyltransferase activity (H3-K27 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 27) = CoA + histone H3 N6-acetyl-L-lysine (position 27). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K27 specific) molecular_function owl:Class GO:0043974 biolink:NamedThing histone H3-K27 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K27 acetylation|histone H3 acetylation at K27 biological_process owl:Class GO:1905287 biolink:NamedThing positive regulation of G2/M transition of mitotic cell cycle involved in cellular response to nitrogen starvation Any positive regulation of G2/M transition of mitotic cell cycle that is involved in cellular response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitotic entry involved in cellular response to nitrogen starvation al 2016-06-21T17:19:33Z biological_process owl:Class GO:0006995 biolink:NamedThing cellular response to nitrogen starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008076 biolink:NamedThing voltage-gated potassium channel complex A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential. tmpzr1t_l9r_go_relaxed.owl voltage-sensitive potassium channel complex|voltage gated potassium channel complex|voltage-dependent potassium channel complex NIF_Subcellular:sao371494298 cellular_component owl:Class GO:0003142 biolink:NamedThing cardiogenic plate morphogenesis The process in which the anatomical structures of the cardiogenic plate are generated and organized. The cardiogenic plate is the first recognizable structure derived from the heart field. tmpzr1t_l9r_go_relaxed.owl cardiac crescent morphogenesis tb 2009-09-22T04:12:18Z biological_process owl:Class GO:0032201 biolink:NamedThing telomere maintenance via semi-conservative replication The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl telomeric replication fork progression|equal telomere replication|telomeric fork progression biological_process owl:Class GO:0071218 biolink:NamedThing cellular response to misfolded protein Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:17:46Z biological_process owl:Class GO:0039504 biolink:NamedThing suppression by virus of host adaptive immune response Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the adaptive immune response of the host organism, an immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process, and allowing for enhanced response to subsequent exposures to the same antigen (immunological memory). tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host adaptive immune response|negative regulation by virus of host adaptive immunity|inhibition of host adaptive immune response by virus|suppression by virus of host acquired immune response bf 2011-05-11T04:41:54Z biological_process owl:Class GO:0002250 biolink:NamedThing adaptive immune response An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory). tmpzr1t_l9r_go_relaxed.owl immune memory response|acquired immune response Wikipedia:Adaptive_immune_system biological_process owl:Class GO:0075279 biolink:NamedThing uredinium development The process that leads to the formation of a uredinium, a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores. tmpzr1t_l9r_go_relaxed.owl development of uredium biological_process owl:Class GO:0045444 biolink:NamedThing fat cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat. tmpzr1t_l9r_go_relaxed.owl adipocyte cell differentiation|adipogenesis|adipose cell differentiation|adipocyte differentiation biological_process owl:Class GO:1902952 biolink:NamedThing positive regulation of dendritic spine maintenance Any process that activates or increases the frequency, rate or extent of dendritic spine maintenance. tmpzr1t_l9r_go_relaxed.owl up regulation of dendritic spine maintenance|up-regulation of dendritic spine maintenance|upregulation of dendritic spine maintenance|activation of dendritic spine maintenance sjp 2014-05-02T08:48:59Z biological_process owl:Class GO:0032612 biolink:NamedThing interleukin-1 production The appearance of interleukin-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-1 secretion|IL-1 production|interleukin-1 biosynthetic process GO:0050701|GO:0042222 biological_process owl:Class GO:1905259 biolink:NamedThing negative regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to nitrosative stress. tmpzr1t_l9r_go_relaxed.owl negative regulation of nitrosative stress-induced apoptosis|inhibition of nitrosative stress-induced apoptosis|downregulation of nitrosative stress-induced apoptosis|down-regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|down-regulation of nitrosative stress-induced apoptosis|down regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|down regulation of nitrosative stress-induced apoptosis|down-regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|downregulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|inhibition of nitrosative stress-induced intrinsic apoptotic signaling pathway|down regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|inhibition of intrinsic apoptotic signaling pathway in response to nitrosative stress|downregulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|negative regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress bf 2016-06-13T17:05:07Z biological_process owl:Class GO:1990442 biolink:NamedThing intrinsic apoptotic signaling pathway in response to nitrosative stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to nitrosative stress; a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions. tmpzr1t_l9r_go_relaxed.owl nitrosative stress-induced apoptosis|nitrosative stress-induced intrinsic apoptotic signaling pathway bf 2014-07-31T14:28:16Z biological_process owl:Class GO:0051932 biolink:NamedThing synaptic transmission, GABAergic The vesicular release of gamma-aminobutyric acid (GABA). from a presynapse, across a chemical synapse, the subsequent activation of GABA receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl synaptic transmission, gamma-aminobutyric acid-ergic|synaptic transmission, GABA mediated|synaptic transmission, gamma-aminobutyric acid mediated|GABAergic synaptic transmission biological_process owl:Class GO:0048392 biolink:NamedThing intermediate mesodermal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an intermediate mesoderm cell. tmpzr1t_l9r_go_relaxed.owl intermediate mesoderm cell differentiation biological_process owl:Class GO:1904424 biolink:NamedThing regulation of GTP binding Any process that modulates the frequency, rate or extent of GTP binding. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-02T20:34:44Z biological_process owl:Class GO:0005525 biolink:NamedThing GTP binding Binding to GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-167429 molecular_function owl:Class GO:0061638 biolink:NamedThing CENP-A containing chromatin The specialized chromatin located in the centromeric core region or the entire centromeric region in organisms with point centromeres, which is enriched for CENP-A-containing nucleosomes. This chromatin forms a 3-dimensional structure which provides a platform for kinetochore assembly and microtubule attachment. tmpzr1t_l9r_go_relaxed.owl chromatin containing CENP-A|centromeric core region chromatin|nuclear CENP-A containing chromatin|centromeric core domain chromatin dph 2014-08-20T14:06:35Z GO:1904834 cellular_component owl:Class GO:0034506 biolink:NamedThing chromosome, centromeric core domain The innermost portion of the centromeric region of a chromosome, encompassing the core region of a chromosome centromere and the proteins that bind to it. tmpzr1t_l9r_go_relaxed.owl chromosome, centric core region|chromosome, centromeric core region cellular_component owl:Class GO:1904606 biolink:NamedThing fat cell apoptotic process Any apoptotic process in a fat cell. tmpzr1t_l9r_go_relaxed.owl adipocyte apoptosis|fat cell apoptosis|adipose cell apoptotic process|adipose cell apoptosis|adipocyte apoptotic process sl 2015-08-27T18:13:06Z biological_process owl:Class GO:0090656 biolink:NamedThing t-circle formation A telomere maintenance process that results in the formation of a telomeric circle, or t-circle. A t-circle is an extrachromosomal duplex or single-stranded circular DNA molecule composed of t-arrays. T-circles are involved in the control of telomere length via alternative-lengthening of telomeres (ALT) pathway and telomere rapid deletion (TRD). tmpzr1t_l9r_go_relaxed.owl telomeric circle formation tb 2015-07-02T11:44:23Z biological_process owl:Class GO:0090737 biolink:NamedThing telomere maintenance via telomere trimming A process that contributes to the maintenance of proper telomeric length and structure via the activation of telomere shortening pathways that compensate telomerase-dependent excessive telomere elongation. Telomere attrition is mediated by a mechanism which involves the generation of single-stranded C-rich telomeric DNA, and the formation and removal of double-stranded telomeric circular DNA (T-circles). Telomere trimming is an independent pathway to recombination-mediated telomere elongation and the well-documented gradual telomere attrition that accompanies cellular replication. tmpzr1t_l9r_go_relaxed.owl tb 2017-02-07T16:51:24Z biological_process owl:Class GO:0048704 biolink:NamedThing embryonic skeletal system morphogenesis The process in which the anatomical structures of the skeleton are generated and organized during the embryonic phase. tmpzr1t_l9r_go_relaxed.owl embryonic skeletal morphogenesis biological_process owl:Class GO:0048706 biolink:NamedThing embryonic skeletal system development The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl embryonic skeletal development biological_process owl:Class GO:0009736 biolink:NamedThing cytokinin-activated signaling pathway A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl cytokinin mediated signalling|cytokinin signaling|cytokinin mediated signaling pathway biological_process owl:Class GO:0071368 biolink:NamedThing cellular response to cytokinin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:13:47Z biological_process owl:Class GO:0060272 biolink:NamedThing embryonic skeletal joint morphogenesis The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072498 biolink:NamedThing embryonic skeletal joint development The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeletal joints over time, from formation to mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-15T04:14:42Z biological_process owl:Class GO:1904708 biolink:NamedThing regulation of granulosa cell apoptotic process Any process that modulates the frequency, rate or extent of granulosa cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of granulosa cell apoptosis|regulation of granulosa cell of ovary apoptosis|regulation of granulosa cell of ovary apoptotic process sl 2015-10-01T16:09:38Z biological_process owl:Class GO:1904700 biolink:NamedThing granulosa cell apoptotic process Any apoptotic process in a granulosa cell. tmpzr1t_l9r_go_relaxed.owl granulosa cell of ovary apoptotic process|granulosa cell apoptosis|granulosa cell of ovary apoptosis sl 2015-09-30T21:29:54Z biological_process owl:Class GO:0097591 biolink:NamedThing ventral disc lateral crest Fibrillar repetitive structure surrounding the ventral disc edge in Giardia species (trophozoite stage). The composition of the lateral crest is not fully known yet. tmpzr1t_l9r_go_relaxed.owl lateral crest|ventral disk lateral crest Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T10:47:48Z cellular_component owl:Class GO:0097597 biolink:NamedThing ventral disc Specialized organelle found in Giardia species (trophozoite stage) and characterized by a spiral array of microtubules and microtubule-associated structures including dorsal microribbons and crossbridges. The edge of the ventral disc narrows into a lateral crest. The ventral disk mediates mechanical attachment of the trophozoite to the host's intestinal wall, and contains the contractile proteins actinin, alpha-actinin, myosin, and tropomyosin working towards contraction of the disk involved in adherence. tmpzr1t_l9r_go_relaxed.owl ventral disk|adhesive disc|ventral adhesive disc Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:29:58Z cellular_component owl:Class GO:0035751 biolink:NamedThing regulation of lysosomal lumen pH Any process that modulates the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-23T10:23:41Z biological_process owl:Class GO:0007040 biolink:NamedThing lysosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases. tmpzr1t_l9r_go_relaxed.owl lysosome organisation|lysosome organization and biogenesis biological_process owl:Class GO:0030899 biolink:NamedThing calcium-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of calcium ion (Ca2+). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090319 biolink:NamedThing positive regulation of chylomicron remodeling Any process that increases the rate, frequency, or extent of chylomicron remodeling. Chylomicron remodeling is the acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-30T10:09:08Z biological_process owl:Class GO:0034371 biolink:NamedThing chylomicron remodeling The acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl chylomicron remnant formation biological_process owl:Class GO:0030082 biolink:NamedThing B800-850 antenna complex Protein-pigment complex that absorbs light at 800 and 850 nm; is peripherally associated to the bacterial reaction center; transfers excitation energy to the B875 antenna complex. tmpzr1t_l9r_go_relaxed.owl LH2 complex|light harvesting complex II cellular_component owl:Class GO:0030079 biolink:NamedThing light-harvesting complex, peripheral complex Bacteriochlorophyll a binding complex that is peripherally associated to the bacterial reaction center. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035532 biolink:NamedThing negative regulation of chemokine (C-C motif) ligand 6 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 6 (CCL6). tmpzr1t_l9r_go_relaxed.owl negative regulation of CCL6 production|negative regulation of chemokine (C-C motif) ligand 6 secretion bf 2010-05-07T10:23:40Z GO:0035536 biological_process owl:Class GO:0035530 biolink:NamedThing chemokine (C-C motif) ligand 6 production The appearance of chemokine (C-C motif) ligand 6 (CCL6) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL6 production bf 2010-05-07T10:21:15Z biological_process owl:Class GO:0048567 biolink:NamedThing ectodermal digestive tract morphogenesis The process in which the anatomical structures of the ectodermal digestive tract are generated and organized. The ectodermal digestive tract includes those portions of the digestive tract that are derived from ectoderm. tmpzr1t_l9r_go_relaxed.owl ectodermal gut morphogenesis biological_process owl:Class GO:0032374 biolink:NamedThing regulation of cholesterol transport Any process that modulates the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140531 biolink:NamedThing regulation of osmosensory signaling MAPK cascade Any process that modulates the frequency, rate or extent of osmosensory signaling MAPK cascade. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20162 pg 2020-10-20T15:38:10Z biological_process owl:Class GO:0000161 biolink:NamedThing osmosensory signaling MAPK cascade A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals, containing at least a Hog1/Sty1 family MAPK, a Pbs2/Wis1 family MAPKK and a Ssk2/Win1 family MAP3K. tmpzr1t_l9r_go_relaxed.owl activation of MAPKK activity involved in osmosensory signaling pathway|osmolarity sensing, activation of MAP kinase kinase kinase activity|activation of MAPK activity involved in osmosensory signaling pathway|activation of MAPKKK activity during osmolarity sensing|osmolarity sensing, activation of MAPKK activity|osmolarity sensing, activation of MAPKKK activity|osmolarity sensing, MAPKKK cascade|Hog1/Sty1 stress-activated MAPK cascade|activation of MAPKKK activity involved in osmosensory signaling pathway|High Osmolarity Glycerol (HOG) MAPK pathway|MAPKKK cascade involved in osmosensory signalling pathway|Hog1 MAPK pathway|inactivation of MAPK activity involved in osmosensory signaling pathway|osmolarity sensing, activation of MAP kinase kinase activity|termination of MAPK activity during osmolarity sensing|activation of MAPKK activity during osmolarity sensing|osmolarity sensing, activation of MAPK activity|MAPK cascade involved in osmosensory signaling pathway|activation of Pbs2 kinase|MAPKKK cascade involved in osmosensory signaling pathway|MAPKKK cascade during osmolarity sensing https://github.com/geneontology/go-ontology/issues/20380 GO:0000169|GO:0000167|GO:0007233|GO:0000168|GO:0000173 biological_process owl:Class GO:0072140 biolink:NamedThing DCT cell development The process whose specific outcome is the progression of a distal convoluted tubule cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl distal convoluted tubule cell development mah 2010-02-24T01:36:21Z biological_process owl:Class GO:0072069 biolink:NamedThing DCT cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the distal convoluted tubule cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl distal convoluted tubule cell differentiation mah 2010-01-25T04:17:22Z biological_process owl:Class GO:0021578 biolink:NamedThing hindbrain maturation A developmental process, independent of morphogenetic (shape) change, that is required for the hindbrain to attain its fully functional state. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021626 biolink:NamedThing central nervous system maturation A developmental process, independent of morphogenetic (shape) change, that is required for the central nervous system to attain its fully functional state. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031093 biolink:NamedThing platelet alpha granule lumen The volume enclosed by the membrane of the platelet alpha granule. tmpzr1t_l9r_go_relaxed.owl platelet alpha-granule lumen cellular_component owl:Class GO:0031091 biolink:NamedThing platelet alpha granule A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG). tmpzr1t_l9r_go_relaxed.owl platelet alpha-granule Wikipedia:Platelet_alpha-granule cellular_component owl:Class GO:0034221 biolink:NamedThing fungal-type cell wall chitin biosynthetic process The chemical reactions and pathways resulting in the formation of cell wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of fungal cells. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall chitin anabolism|fungal-type cell wall chitin synthesis|fungal-type cell wall chitin biosynthesis|fungal-type cell wall chitin formation biological_process owl:Class GO:0009272 biolink:NamedThing fungal-type cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a fungal-type cell wall. The fungal-type cell wall contains beta-glucan and may contain chitin. tmpzr1t_l9r_go_relaxed.owl chitin- and beta-glucan-containing cell wall biogenesis|fungal-type cell wall formation|fungal-type cell wall synthesis|fungal-type cell wall biosynthetic process|fungal-type cell wall anabolism biological_process owl:Class GO:1903281 biolink:NamedThing positive regulation of calcium:sodium antiporter activity Any process that activates or increases the frequency, rate or extent of calcium:sodium antiporter activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial sodium/calcium ion exchange|up-regulation of calcium:sodium antiporter activity|upregulation of sodium:calcium exchange|up regulation of sodium:calcium exchange|upregulation of sodium/calcium exchanger|up-regulation of sodium/calcium exchanger|upregulation of mitochondrial sodium/calcium ion exchange|upregulation of calcium:sodium antiporter activity|activation of sodium:calcium exchange|activation of mitochondrial sodium/calcium ion exchange|up-regulation of mitochondrial sodium/calcium ion exchange|positive regulation of sodium/calcium exchanger|up regulation of sodium/calcium exchanger|up-regulation of sodium:calcium exchange|activation of sodium/calcium exchanger|up regulation of calcium:sodium antiporter activity|activation of calcium:sodium antiporter activity|positive regulation of sodium:calcium exchange|up regulation of mitochondrial sodium/calcium ion exchange rl 2014-08-11T12:53:47Z biological_process owl:Class GO:0004901 biolink:NamedThing granulocyte macrophage colony-stimulating factor receptor activity Combining with granulocyte macrophage colony-stimulating factor (GM-CSF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CSF-2 receptor activity|CSF2R|granulocyte macrophage colony stimulating factor receptor activity|GMC-SF receptor activity|GM-CSF receptor activity GO:0030525 molecular_function owl:Class GO:0042021 biolink:NamedThing granulocyte macrophage colony-stimulating factor complex binding Binding to a granulocyte macrophage colony-stimulating factor complex. tmpzr1t_l9r_go_relaxed.owl GM-CSF complex binding|granulocyte macrophage colony stimulating factor complex binding|GMC-SF complex binding molecular_function owl:Class GO:0071712 biolink:NamedThing ER-associated misfolded protein catabolic process The chemical reactions and pathways resulting in the breakdown of misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-associated misfolded protein catabolic process|ER-associated misfolded protein breakdown|ER-associated misfolded protein degradation|endoplasmic reticulum-associated misfolded protein catabolism|proteasomal protein catabolism of misfolded ER proteins|ER-associated misfolded protein catabolism See also the biological process terms 'unfolded protein response ; GO:0030968' and 'retrograde protein transport, ER to cytosol ; GO:0030970'. mah 2010-03-10T12:53:27Z biological_process owl:Class GO:0035053 biolink:NamedThing dorsal vessel heart proper cell fate commitment The commitment of dorsal vessel cardioblast cells to a heart proper cell fate and their capacity to differentiate into heart cells. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035054 biolink:NamedThing embryonic heart tube anterior/posterior pattern specification The establishment, maintenance and elaboration of cell differentiation that results in the anterior/posterior subdivision of the embryonic heart tube. In Drosophila this results in subdivision of the dorsal vessel into to the posterior heart proper and the anterior aorta. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033276 biolink:NamedThing transcription factor TFTC complex A protein complex that does not contain either a TATA-binding protein (TBP) or a TBP-like factor, but is composed of several TAFIIs and other proteins, including a histone acetyltransferase. This complex is able to nucleate transcription initiation by RNA polymerase II, can mediate transcriptional activation, and has histone acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016591 biolink:NamedThing RNA polymerase II, holoenzyme A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase II, holoenzyme cellular_component owl:Class GO:2001086 biolink:NamedThing laminarabiose transport The directed movement of a laminarabioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T12:55:01Z biological_process owl:Class GO:0001763 biolink:NamedThing morphogenesis of a branching structure The process in which the anatomical structures of branches are generated and organized. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes. tmpzr1t_l9r_go_relaxed.owl branching morphogenesis biological_process owl:Class GO:1904247 biolink:NamedThing positive regulation of polynucleotide adenylyltransferase activity Any process that activates or increases the frequency, rate or extent of polynucleotide adenylyltransferase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of polyadenylic polymerase activity|activation of ATP-polynucleotide adenylyltransferase activity|activation of ATP:polynucleotidylexotransferase activity|activation of polyadenylic polymerase activity|activation of poly(A) hydrolase activity|activation of polynucleotide adenylyltransferase activity|positive regulation of polyadenylate nucleotidyltransferase activity|up-regulation of poly-A polymerase activity|up-regulation of polyadenylic polymerase activity|up regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|up-regulation of AMP polynucleotidylexotransferase activity|activation of poly-A polymerase activity|up regulation of ATP:polynucleotide adenylyltransferase activity|up regulation of polyadenylate synthetase activity|upregulation of ATP:polynucleotidylexotransferase activity|up-regulation of polyadenylate synthetase activity|upregulation of AMP polynucleotidylexotransferase activity|up-regulation of NTP polymerase activity|upregulation of polyadenylic acid polymerase activity|positive regulation of NTP polymerase activity|up-regulation of polynucleotide adenylyltransferase activity|activation of NTP polymerase activity|up regulation of NTP polymerase activity|positive regulation of poly(A) synthetase activity|up-regulation of poly(A) synthetase activity|up regulation of ATP:polynucleotidylexotransferase activity|up regulation of terminal riboadenylate transferase activity|activation of polyadenylate polymerase activity|up-regulation of poly(A) polymerase activity|up-regulation of ATP:polynucleotidylexotransferase activity|positive regulation of poly-A polymerase activity|activation of AMP polynucleotidylexotransferase activity|activation of RNA formation factors, PF1|activation of RNA adenylating enzyme activity|up regulation of RNA adenylating enzyme activity|activation of polyadenylate nucleotidyltransferase activity|upregulation of polynucleotide adenylyltransferase activity|upregulation of ATP-polynucleotide adenylyltransferase activity|upregulation of polyadenylate synthetase activity|upregulation of poly(A) hydrolase activity|up regulation of poly(A) synthetase activity|up-regulation of RNA adenylating enzyme activity|upregulation of polyadenylate nucleotidyltransferase activity|activation of poly(A) polymerase activity|activation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|activation of terminal riboadenylate transferase activity|up-regulation of terminal riboadenylate transferase activity|up-regulation of ATP-polynucleotide adenylyltransferase activity|up-regulation of polyadenylic acid polymerase activity|up-regulation of polyadenylate nucleotidyltransferase activity|upregulation of polyadenylate polymerase activity|positive regulation of poly(A) polymerase activity|upregulation of terminal riboadenylate transferase activity|up regulation of RNA formation factors, PF1|activation of poly(A) synthetase activity|activation of polyadenylic acid polymerase activity|upregulation of poly-A polymerase activity|upregulation of polyadenylic polymerase activity|positive regulation of ATP:polynucleotide adenylyltransferase activity|upregulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|up-regulation of polyadenylate polymerase activity|up regulation of polyadenylate nucleotidyltransferase activity|up regulation of ATP-polynucleotide adenylyltransferase activity|up-regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|up-regulation of RNA formation factors, PF1|up regulation of poly(A) polymerase activity|positive regulation of polyadenylate synthetase activity|activation of ATP:polynucleotide adenylyltransferase activity|up regulation of AMP polynucleotidylexotransferase activity|positive regulation of terminal riboadenylate transferase activity|upregulation of NTP polymerase activity|positive regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|upregulation of poly(A) polymerase activity|upregulation of RNA adenylating enzyme activity|positive regulation of polyadenylate polymerase activity|upregulation of poly(A) synthetase activity|positive regulation of polyadenylic acid polymerase activity|positive regulation of RNA adenylating enzyme activity|positive regulation of ATP-polynucleotide adenylyltransferase activity|positive regulation of RNA formation factors, PF1|upregulation of RNA formation factors, PF1|up regulation of polyadenylate polymerase activity|positive regulation of AMP polynucleotidylexotransferase activity|up regulation of poly(A) hydrolase activity|positive regulation of ATP:polynucleotidylexotransferase activity|activation of polyadenylate synthetase activity|positive regulation of poly(A) hydrolase activity|up-regulation of poly(A) hydrolase activity|up regulation of polyadenylic acid polymerase activity|upregulation of ATP:polynucleotide adenylyltransferase activity|up-regulation of ATP:polynucleotide adenylyltransferase activity|up regulation of poly-A polymerase activity|up regulation of polynucleotide adenylyltransferase activity|up regulation of polyadenylic polymerase activity kmv 2015-05-19T14:47:32Z biological_process owl:Class GO:0004652 biolink:NamedThing polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group. tmpzr1t_l9r_go_relaxed.owl ATP:polynucleotide adenylyltransferase activity|AMP polynucleotidylexotransferase activity|polyadenylic polymerase activity|poly(A) synthetase activity|terminal riboadenylate transferase activity|poly(A) polymerase activity|RNA formation factors, PF1|polyadenylic acid polymerase activity|polyadenylate synthetase activity|ATP-polynucleotide adenylyltransferase activity|ATP:polynucleotidylexotransferase activity|poly(A) hydrolase activity|adenosine triphosphate:ribonucleic acid adenylyltransferase activity|poly-A polymerase activity|RNA adenylating enzyme activity|polyadenylate polymerase activity|NTP polymerase activity|polyadenylate nucleotidyltransferase activity EC:2.7.7.19|RHEA:11332|Reactome:R-HSA-72185|MetaCyc:POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN molecular_function owl:Class GO:0016198 biolink:NamedThing axon choice point recognition The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008900 biolink:NamedThing P-type potassium:proton transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in). tmpzr1t_l9r_go_relaxed.owl hydrogen:potassium-exchanging ATPase activity|H+-K+-ATPase activity|H(+)/K(+)-exchanging ATPase activity|H,K-ATPase activity|proton pump activity|hydrogen:potassium exchanging ATPase activity|gastric H(+)/K(+) ATPase activity|H+/K+-ATPase activity|potassium:proton exchanging ATPase activity|gastric H+/K+ ATPase|ATP phosphohydrolase (H+/K+-exchanging)|H(+)/K(+)-ATPase activity|hydrogen/potassium-exchanging ATPase activity|H+/K+-exchanging ATPase activity|(K+ + H+)-ATPase activity https://github.com/geneontology/go-ontology/issues/20821 Reactome:R-HSA-937311|EC:7.2.2.19|RHEA:22044 GO:0005390 molecular_function owl:Class GO:0033633 biolink:NamedThing negative regulation of cell-cell adhesion mediated by integrin Any process that stops, prevents, or reduces the frequency, rate, or extent of cell-cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell-cell adhesion mediated by integrin complex biological_process owl:Class GO:0044343 biolink:NamedThing canonical Wnt signaling pathway involved in regulation of type B pancreatic cell proliferation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that modulates the rate or frequency of pancreatic B cell proliferation. Pancreatic B cell are cells of the pancreas that secrete insulin. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in regulation of type B pancreatic cell proliferation|canonical Wnt receptor signalling pathway involved in regulation of pancreatic B cell proliferation|canonical Wnt receptor signaling pathway involved in regulation of type B pancreatic cell proliferation|canonical Wnt receptor signaling pathway involved in regulation of pancreatic B cell proliferation|canonical Wnt-activated signaling pathway involved in regulation of type B pancreatic cell proliferation|canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation jl 2010-08-25T01:53:22Z biological_process owl:Class GO:0061469 biolink:NamedThing regulation of type B pancreatic cell proliferation Any process that modulates the frequency, rate or extent of type B pancreatic cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-01T13:16:23Z biological_process owl:Class GO:0004743 biolink:NamedThing pyruvate kinase activity Catalysis of the reaction: = ADP + H(+) + phosphoenolpyruvate => ATP + pyruvate. tmpzr1t_l9r_go_relaxed.owl ATP:pyruvate 2-O-phosphotransferase activity|phosphoenol transphosphorylase activity|phosphoenolpyruvate kinase activity RHEA:18159|EC:2.7.1.40|MetaCyc:PEPDEPHOS-RXN|Reactome:R-HSA-71670 molecular_function owl:Class GO:0071539 biolink:NamedThing protein localization to centrosome A process in which a protein is transported to, or maintained at, the centrosome. tmpzr1t_l9r_go_relaxed.owl protein localisation to centrosome mah 2010-01-12T02:09:45Z biological_process owl:Class GO:0044663 biolink:NamedThing establishment or maintenance of cell type involved in phenotypic switching A cellular process of the specification, formation or maintenance of an alternative cell type, occurring as part of the process of phenotypic switching. Phenotypic switching begins with changes in cell morphology and altered gene expression patterns and ends when the morphology of a population of cells has reverted back to the default state, accompanied by altered expression patterns. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-07T14:30:07Z biological_process owl:Class GO:0036166 biolink:NamedThing phenotypic switching A reversible switch of a cell from one cell type or form to another, at a frequency above the expected frequency for somatic mutations. Phenotypic switching involves changes in cell morphology and altered gene expression patterns. For example, Candida albicans switches from white cells to opaque cells for sexual mating. Phenotypic switching also occurs in multicellular organisms; smooth muscle cells (SMCs) exhibit phenotypic transitions to allow rapid adaption to fluctuating environmental cues. tmpzr1t_l9r_go_relaxed.owl phenotypic dimorphism Mating type switching is not considered a type of phenotypic switching: for mating type switching, consider instead annotating to 'mating type switching ; GO:0007533'. bf 2012-03-27T01:31:28Z biological_process owl:Class GO:1905629 biolink:NamedThing positive regulation of serotonin biosynthetic process Any process that activates or increases the frequency, rate or extent of serotonin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of serotonin synthesis|upregulation of serotonin biosynthesis|upregulation of serotonin formation|upregulation of serotonin anabolism|up-regulation of serotonin biosynthetic process|positive regulation of serotonin anabolism|activation of serotonin formation|up regulation of serotonin biosynthetic process|positive regulation of serotonin biosynthesis|activation of serotonin synthesis|positive regulation of serotonin synthesis|up-regulation of serotonin biosynthesis|upregulation of serotonin synthesis|up regulation of serotonin formation|up regulation of serotonin anabolism|up-regulation of serotonin formation|up-regulation of serotonin anabolism|activation of serotonin biosynthesis|positive regulation of serotonin formation|up regulation of serotonin biosynthesis|up-regulation of serotonin synthesis|activation of serotonin anabolism|activation of serotonin biosynthetic process|upregulation of serotonin biosynthetic process pad 2016-10-31T14:26:36Z biological_process owl:Class GO:0042427 biolink:NamedThing serotonin biosynthetic process The chemical reactions and pathways resulting in the formation of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. tmpzr1t_l9r_go_relaxed.owl serotonin formation|serotonin biosynthesis|serotonin synthesis|serotonin anabolism Wikipedia:Serotonin biological_process owl:Class GO:1900563 biolink:NamedThing dehydroaustinol biosynthetic process The chemical reactions and pathways resulting in the formation of dehydroaustinol. tmpzr1t_l9r_go_relaxed.owl dehydroaustinol formation|dehydroaustinol synthesis|dehydroaustinol biosynthesis|dehydroaustinol anabolism di 2012-05-15T06:28:03Z biological_process owl:Class GO:0039692 biolink:NamedThing single stranded viral RNA replication via double stranded DNA intermediate A viral genome replication where the template is single-stranded RNA (ssRNA), and which proceeds via a double stranded DNA (dsDNA) intermediate molecule. Viral genomic RNA is first reverse transcribed into dsDNA, which integrates into the host chromosomal DNA, where it is transcribed by host RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl retroviral genome replication|viral ssRNA replication via dsDNA intermediate VZ:1937 bf 2013-10-17T15:59:43Z GO:0045090 biological_process owl:Class GO:0048069 biolink:NamedThing eye pigmentation Establishment of a pattern of pigment in the eye of an organism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Eye_color biological_process owl:Class GO:1903347 biolink:NamedThing negative regulation of bicellular tight junction assembly Any process that stops, prevents or reduces the frequency, rate or extent of tight junction assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of tight junction formation|down regulation of tight junction assembly|down-regulation of tight junction formation|inhibition of tight junction formation|downregulation of tight junction formation|down-regulation of tight junction assembly|negative regulation of tight junction formation|inhibition of tight junction assembly|downregulation of tight junction assembly pr 2014-08-19T11:02:14Z biological_process owl:Class GO:0070830 biolink:NamedThing bicellular tight junction assembly The aggregation, arrangement and bonding together of a set of components to form a tight junction, an occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet. tmpzr1t_l9r_go_relaxed.owl tight junction formation mah 2009-07-23T04:32:38Z biological_process owl:Class GO:0005754 biolink:NamedThing mitochondrial proton-transporting ATP synthase, catalytic core The hexamer, comprising three alpha and three beta subunits, that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000312 biolink:NamedThing regulation of kainate selective glutamate receptor activity Any process that modulates the frequency, rate or extent of kainate selective glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-18T10:14:16Z biological_process owl:Class GO:2000028 biolink:NamedThing regulation of photoperiodism, flowering Any process that modulates the frequency, rate or extent of photoperiodism, flowering. tmpzr1t_l9r_go_relaxed.owl regulation of photoperiodic control of inflorescence development|regulation of response to night length, flowering|regulation of photoperiodic control of flowering time|regulation of response to day length, flowering|regulation of response to photoperiod, flowering tb 2010-08-05T11:27:18Z biological_process owl:Class GO:0098834 biolink:NamedThing presynaptic endocytic zone cytoplasmic component The cytoplasmic component of the presynaptic endocytic zone. tmpzr1t_l9r_go_relaxed.owl cortex of presynaptic endocytic zone cellular_component owl:Class GO:0098833 biolink:NamedThing presynaptic endocytic zone A specialized region of the plasma membrane and underlying cytoplasm which surround the the active zone, into which synaptic vesicle membranes are recycled following exocytosis. It is especially enriched in endocytic proteins following intense activity. tmpzr1t_l9r_go_relaxed.owl May be identical to periactive zone? cellular_component owl:Class GO:0030252 biolink:NamedThing growth hormone secretion The regulated release of growth hormone from secretory granules into the blood. tmpzr1t_l9r_go_relaxed.owl somatotropin secretion biological_process owl:Class GO:0000212 biolink:NamedThing meiotic spindle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic spindle organization and biogenesis|spindle organization during meiosis|meiotic spindle organisation|meiotic spindle stabilization GO:0043147 biological_process owl:Class GO:1905588 biolink:NamedThing plant-type cell wall modification involved in stomatal movement Any plant-type cell wall modification that is involved in stomatal movement. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall modification involved in stomatal movement lr 2016-10-25T00:29:26Z biological_process owl:Class GO:0010118 biolink:NamedThing stomatal movement The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902004 biolink:NamedThing positive regulation of amyloid-beta formation Any process that activates or increases the frequency, rate or extent of amyloid-beta formation. tmpzr1t_l9r_go_relaxed.owl activation of beta-amyloid formation|up regulation of beta-amyloid formation|upregulation of beta-amyloid formation|up-regulation of beta-amyloid formation|positive regulation of beta-amyloid formation dph 2013-03-21T19:59:31Z biological_process owl:Class GO:0034205 biolink:NamedThing amyloid-beta formation The generation of amyloid-beta by cleavage of the amyloid precursor protein (APP). tmpzr1t_l9r_go_relaxed.owl beta-amyloid polypeptide formation from amyloid precursor protein|beta-amyloid formation|beta-amyloid polypeptide formation from APP Note that this term does not fall under the general GO definition for biosynthetic processes, which is 'The chemical reactions and pathways resulting in the formation of... ', because amyloid-beta can only be formed by the proteolysis of a larger molecule (see term definition). The word 'formation' is therefore used in place of biosynthesis. Also, note that this term refers to the production of the amyloid-beta polypeptide from the amyloid precursor protein (APP), and should be used to annotate e.g. secretases that cleave APP to form amyloid-beta. To annotate gene products involved in the formation of amyloid fibrils, please consider 'amyloid fibril formation' (GO:1990000). biological_process owl:Class GO:0061558 biolink:NamedThing cranial ganglion maturation A developmental process, independent of morphogenetic (shape) change, that is required for a cranial ganglion to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl cranial ganglia maturation dph 2013-07-10T08:59:52Z biological_process owl:Class GO:0061550 biolink:NamedThing cranial ganglion development The process whose specific outcome is the progression of a cranial ganglion over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl cranial ganglia development dph 2013-07-10T08:40:14Z biological_process owl:Class GO:0072187 biolink:NamedThing metanephric cap formation The developmental process pertaining to the initial formation of a metanephric cap from unspecified parts. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:26:53Z biological_process owl:Class GO:0072186 biolink:NamedThing metanephric cap morphogenesis The process in which the anatomical structures of the metanephric cap are generated and organized. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:22:51Z biological_process owl:Class GO:0010726 biolink:NamedThing positive regulation of hydrogen peroxide metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl positive regulation of hydrogen peroxide metabolism biological_process owl:Class GO:0042743 biolink:NamedThing hydrogen peroxide metabolic process The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. tmpzr1t_l9r_go_relaxed.owl H2O2 metabolic process|hydrogen peroxide metabolism biological_process owl:Class GO:1902856 biolink:NamedThing negative regulation of non-motile cilium assembly Any process that stops, prevents or reduces the frequency, rate or extent of non-motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of nonmotile primary cilium assembly|downregulation of nonmotile primary cilia assembly|downregulation of sensory cilium assembly|negative regulation of nonmotile primary cilia assembly|down-regulation of nonmotile primary cilia assembly|negative regulation of immotile primary cilium assembly|down-regulation of sensory cilium biogenesis|down regulation of nonmotile primary cilium assembly|downregulation of nonmotile primary cilium assembly|down-regulation of immotile primary cilium assembly|inhibition of nonmotile primary cilium assembly|inhibition of immotile primary cilium assembly|inhibition of nonmotile primary cilia assembly|inhibition of sensory cilium biogenesis|down regulation of sensory cilium biogenesis|inhibition of sensory cilium assembly|negative regulation of sensory cilium assembly|negative regulation of sensory cilium biogenesis|down regulation of immotile primary cilium assembly|downregulation of immotile primary cilium assembly|down-regulation of nonmotile primary cilium assembly|downregulation of sensory cilium biogenesis|down regulation of nonmotile primary cilia assembly|down regulation of sensory cilium assembly|down-regulation of sensory cilium assembly kmv 2014-04-02T15:42:17Z biological_process owl:Class GO:1905515 biolink:NamedThing non-motile cilium assembly The aggregation, arrangement and bonding together of a set of components to form a non-motile cilium. tmpzr1t_l9r_go_relaxed.owl nonmotile primary cilium assembly|sensory cilium biogenesis|non-motile cilium formation|nonmotile cilium formation|nonmotile cilium assembly|nonmotile primary cilia assembly|immotile primary cilium assembly|sensory cilium assembly pr 2016-09-30T11:55:15Z GO:0035058 biological_process owl:Class GO:0052074 biolink:NamedThing positive regulation by symbiont of host salicylic acid-mediated defense response Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the salicylic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by symbiont of host salicylic acid-mediated defense response|induction by organism of host salicylic acid-mediated defense response|positive regulation by organism of host SA-mediated defense response|up regulation by symbiont of host salicylic acid-mediated defense response|up-regulation by symbiont of host salicylic acid-mediated defense response|induction by organism of host SA-mediated defense response|upregulation by symbiont of host salicylic acid-mediated defense response|positive regulation by organism of salicylic acid-mediated defense response of other organism involved in symbiotic interaction|stimulation by symbiont of host salicylic acid-mediated defense response GO:0052272 biological_process owl:Class GO:0021662 biolink:NamedThing rhombomere 4 structural organization The process that contributes to creating the structural organization of rhombomere 4. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 4 structural organisation biological_process owl:Class GO:0021661 biolink:NamedThing rhombomere 4 morphogenesis The process in which the anatomical structure of rhombomere 4 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014726 biolink:NamedThing negative regulation of extraocular skeletal muscle development Any process that stops, prevents, or reduces the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002074 biolink:NamedThing extraocular skeletal muscle development The process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031630 biolink:NamedThing regulation of synaptic vesicle fusion to presynaptic active zone membrane Any process that modulates the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic vesicle fusion to presynaptic membrane|regulation of synaptic vesicle fusion to pre-synaptic membrane biological_process owl:Class GO:0031629 biolink:NamedThing synaptic vesicle fusion to presynaptic active zone membrane Fusion of the membrane of a synaptic vesicle with the presynaptic active zone membrane, thereby releasing its cargo neurotransmitters into the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle fusion|synaptic vesicle fusion to pre-synaptic membrane|synaptic vesicle fusion to presynaptic membrane biological_process owl:Class GO:0009883 biolink:NamedThing red or far-red light photoreceptor activity The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 660-730nm. The response may involve a change in conformation. tmpzr1t_l9r_go_relaxed.owl red/far-red light photoreceptor activity molecular_function owl:Class GO:1902974 biolink:NamedThing meiotic DNA replication initiation Any DNA replication initiation involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication initiation involved in meiotic cell cycle DNA replication|premeiotic DNA replication initiation|DNA replication initiation involved in meiotic DNA replication|initiation of premeiotic DNA synthesis|initiation of premeiotic DNA replication|initiation of meiotic DNA synthesis jl 2014-05-06T15:21:06Z GO:0072691 biological_process owl:Class GO:1903985 biolink:NamedThing regulation of intestinal D-glucose absorption Any process that modulates the frequency, rate or extent of intestinal D-glucose absorption. tmpzr1t_l9r_go_relaxed.owl als 2015-03-04T10:07:55Z biological_process owl:Class GO:0001951 biolink:NamedThing intestinal D-glucose absorption Uptake of D-glucose into the blood by absorption from the small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002022 biolink:NamedThing detection of dietary excess The neurological process in which the brain senses excessive caloric intake. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002021 biolink:NamedThing response to dietary excess The physiological process in which dietary excess is sensed by the central nervous system, resulting in a reduction in food intake and increased energy expenditure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120271 biolink:NamedThing negative regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts Any process that stops, prevents or reduces the frequency, rate or extent of selective degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18757 krc 2020-10-08T21:01:06Z biological_process owl:Class GO:0035990 biolink:NamedThing tendon cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a tendon cell. Tendon cell are elongated fibrocytes in which the cytoplasm is stretched between the collagen fibres of the tendon. Tendon cells have a central cell nucleus with a prominent nucleolus, a well-developed rough endoplasmic reticulum, and are responsible for synthesis and turnover of tendon fibres and ground substance. tmpzr1t_l9r_go_relaxed.owl tenocyte differentiation|muscle attachment cell differentiation bf 2011-08-26T04:16:06Z biological_process owl:Class GO:0061218 biolink:NamedThing negative regulation of mesonephros development Any process that decreases the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:43:06Z biological_process owl:Class GO:0004103 biolink:NamedThing choline kinase activity Catalysis of the reaction: ATP + choline = ADP + choline phosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl choline kinase (phosphorylating)|choline-ethanolamine kinase activity|choline phosphokinase activity|ATP:choline phosphotransferase activity EC:2.7.1.32|RHEA:12837|MetaCyc:CHOLINE-KINASE-RXN|KEGG_REACTION:R01021|Reactome:R-HSA-1483004 molecular_function owl:Class GO:0006657 biolink:NamedThing CDP-choline pathway The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl Kennedy pathway|phosphatidylcholine biosynthesis from choline MetaCyc:PWY3O-450 biological_process owl:Class GO:0042276 biolink:NamedThing error-prone translesion synthesis The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions and causes an increase in the endogenous mutation level. For example, in E. coli, a low fidelity DNA polymerase, pol V, copies lesions that block replication fork progress. This produces mutations specifically targeted to DNA template damage sites, but it can also produce mutations at undamaged sites. tmpzr1t_l9r_go_relaxed.owl mutagenic PRR|error-prone postreplication DNA repair|mutagenic postreplication DNA repair biological_process owl:Class GO:0030673 biolink:NamedThing axolemma The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness. tmpzr1t_l9r_go_relaxed.owl axonal membrane Wikipedia:Axolemma|NIF_Subcellular:sao250772229 cellular_component owl:Class GO:0044304 biolink:NamedThing main axon The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites. tmpzr1t_l9r_go_relaxed.owl axon shaft|axon trunk|axonal shaft NIF_Subcellular:sao1596975044 jl 2010-02-05T03:48:17Z cellular_component owl:Class GO:0032716 biolink:NamedThing negative regulation of interleukin-7 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-7 production. tmpzr1t_l9r_go_relaxed.owl inhibition of interleukin-7 production|negative regulation of interleukin-7 secretion|negative regulation of IL-7 production|downregulation of interleukin-7 production|down-regulation of interleukin-7 production|down regulation of interleukin-7 production|negative regulation of interleukin-7 biosynthetic process GO:0045412|GO:0150113 biological_process owl:Class GO:0032636 biolink:NamedThing interleukin-7 production The appearance of interleukin-7 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-7 secretion|interleukin-7 biosynthetic process|IL-7 production GO:0072605|GO:0042227 biological_process owl:Class GO:0048296 biolink:NamedThing regulation of isotype switching to IgA isotypes Any process that modulates the frequency, rate or extent of isotype switching to IgA isotypes. tmpzr1t_l9r_go_relaxed.owl regulation of isotype switch recombination to IgA isotypes|regulation of class switch recombination to IgA isotypes|regulation of class switching to IgA isotypes biological_process owl:Class GO:0048290 biolink:NamedThing isotype switching to IgA isotypes The switching of activated B cells from IgM biosynthesis to biosynthesis of an IgA isotype, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and one of the IgA constant region gene segments in the immunoglobulin heavy chain locus. tmpzr1t_l9r_go_relaxed.owl class switching to IgA isotypes|isotype switch recombination to IgA isotypes biological_process owl:Class GO:0060611 biolink:NamedThing mammary gland fat development The progression of the mammary gland fat over time, from its formation to the mature structure. The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T12:27:57Z biological_process owl:Class GO:0030879 biolink:NamedThing mammary gland development The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. Its development starts with the formation of the mammary line and ends as the mature gland cycles between nursing and weaning stages. tmpzr1t_l9r_go_relaxed.owl mammogenesis biological_process owl:Class GO:0032967 biolink:NamedThing positive regulation of collagen biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl positive regulation of collagen formation|positive regulation of collagen synthesis|positive regulation of collagen biosynthesis|positive regulation of collagen anabolism biological_process owl:Class GO:0021987 biolink:NamedThing cerebral cortex development The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon. tmpzr1t_l9r_go_relaxed.owl corticogenesis|neocortex development biological_process owl:Class GO:0021543 biolink:NamedThing pallium development The process whose specific outcome is the progression of the pallium over time, from its formation to the mature structure. The pallium is the roof region of the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004373 biolink:NamedThing glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). tmpzr1t_l9r_go_relaxed.owl UDPglucose:glycogen 4-alpha-D-glucosyltransferase activity|uridine diphosphoglucose-glycogen glucosyltransferase activity|UDPG-glycogen transglucosylase activity|glycogen (starch) synthetase activity|UDP-glucose:glycogen 4-alpha-D-glucosyltransferase activity|UDP-glucose-glycogen glucosyltransferase activity|UDP-glycogen synthase activity|UDPG-glycogen synthetase activity EC:2.4.1.11|RHEA:18549|MetaCyc:2.4.1.11-RXN|Reactome:R-HSA-3322009|Reactome:R-HSA-3322001|Reactome:R-HSA-3322041|Reactome:R-HSA-3828061|Reactome:R-HSA-3858506 molecular_function owl:Class GO:1903094 biolink:NamedThing negative regulation of protein K48-linked deubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein K48-linked deubiquitination. tmpzr1t_l9r_go_relaxed.owl inhibition of protein K48-linked deubiquitination|down-regulation of protein K48-linked deubiquitination|downregulation of protein K48-linked deubiquitination|down regulation of protein K48-linked deubiquitination bf 2014-06-03T12:27:54Z biological_process owl:Class GO:0071108 biolink:NamedThing protein K48-linked deubiquitination A protein deubiquitination process in which a K48-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-12T01:34:01Z biological_process owl:Class GO:2000234 biolink:NamedThing positive regulation of rRNA processing Any process that activates or increases the frequency, rate or extent of rRNA processing. tmpzr1t_l9r_go_relaxed.owl positive regulation of 35S primary transcript processing mah 2010-11-10T12:11:36Z biological_process owl:Class GO:0090419 biolink:NamedThing negative regulation of transcription involved in G2/M transition of mitotic cell cycle Any process that inhibits or decreases the frequency, rate or extent of transcription of target genes that are transcribed as part of the G2/M transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter during G2/M transition of the mitotic cell cycle|down-regulation of transcription from RNA polymerase II promoter during the G2/M transition of the mitotic cell cycle tb 2011-10-26T03:59:41Z biological_process owl:Class GO:0000086 biolink:NamedThing G2/M transition of mitotic cell cycle The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex. tmpzr1t_l9r_go_relaxed.owl mitotic G2/M transition biological_process owl:Class GO:0090184 biolink:NamedThing positive regulation of kidney development Any process that increases the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl positive regulation of nephrogenesis tb 2009-12-18T10:52:01Z biological_process owl:Class GO:1904376 biolink:NamedThing negative regulation of protein localization to cell periphery Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell periphery. tmpzr1t_l9r_go_relaxed.owl downregulation of protein localization to cell periphery|inhibition of protein localization to cell periphery|down regulation of protein localization to cell periphery|down-regulation of protein localization to cell periphery sl 2015-06-22T22:09:32Z biological_process owl:Class GO:0030398 biolink:NamedThing peroxisomal membrane disassembly The controlled breakdown of the membranes of cargo-carrying vesicles formed during peroxisome degradation. tmpzr1t_l9r_go_relaxed.owl peroxisomal membrane breakdown|peroxisomal membrane degradation|peroxisomal membrane catabolism biological_process owl:Class GO:0030242 biolink:NamedThing autophagy of peroxisome The process in which peroxisomes are delivered to a type of vacuole and degraded in response to changing nutrient conditions. tmpzr1t_l9r_go_relaxed.owl peroxisome degradation|pexophagy biological_process owl:Class GO:0072207 biolink:NamedThing metanephric epithelium development The process whose specific outcome is the progression of an epithelium in the metanephros over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T11:50:37Z biological_process owl:Class GO:0048213 biolink:NamedThing Golgi vesicle prefusion complex stabilization The binding of specific proteins to the t-SNARE/v-SNARE/SNAP25 complex, by which the Golgi vesicle prefusion complex is stabilized. tmpzr1t_l9r_go_relaxed.owl dictyosome vesicle prefusion complex stabilisation|Golgi-derived vesicle prefusion complex stabilization|Golgi vesicle prefusion complex assembly biological_process owl:Class GO:0060576 biolink:NamedThing intestinal epithelial cell development The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell of the intestine over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-06T08:20:24Z biological_process owl:Class GO:0007314 biolink:NamedThing oocyte anterior/posterior axis specification Polarization of the oocyte along its anterior-posterior axis. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte anterior/posterior axis determination GO:0048112 biological_process owl:Class GO:1905921 biolink:NamedThing regulation of acetylcholine biosynthetic process Any process that modulates the frequency, rate or extent of acetylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of acetylcholine formation|regulation of acetylcholine anabolism|regulation of acetylcholine biosynthesis|regulation of acetylcholine synthesis bc 2017-02-08T13:08:30Z biological_process owl:Class GO:0008292 biolink:NamedThing acetylcholine biosynthetic process The chemical reactions and pathways resulting in the formation of acetylcholine, the acetic acid ester of the organic base choline. tmpzr1t_l9r_go_relaxed.owl acetylcholine biosynthesis|acetylcholine synthesis|acetylcholine formation|acetylcholine anabolism biological_process owl:Class GO:0048912 biolink:NamedThing glial cell migration in anterior lateral line nerve The movement of a glial cell along the axons in the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048909 biolink:NamedThing anterior lateral line nerve development The process whose specific outcome is the progression of the anterior lateral line nerve over time, form its formation to the mature structure. The anterior lateral line nerve contains efferent axons that innervate hair cells of the ALL and afferent axons that project to an octavolateralis column in the hindbrain. The octavolateralis column consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus. tmpzr1t_l9r_go_relaxed.owl nALL development|rostral lateral line nerve development|ALLN development GO:0021734 biological_process owl:Class GO:0032324 biolink:NamedThing molybdopterin cofactor biosynthetic process The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl molybdopterin cofactor anabolism|molybdopterin cofactor synthesis|molybdopterin cofactor formation|molybdopterin cofactor biosynthesis MetaCyc:Molybdenum-Cofactor-Biosynthesis biological_process owl:Class GO:0030366 biolink:NamedThing molybdopterin synthase activity Catalysis of the conversion of precursor Z to molybdopterin, the final step in molybdopterin biosynthesis. tmpzr1t_l9r_go_relaxed.owl RHEA:26333|Reactome:R-HSA-947541|EC:2.8.1.12 molecular_function owl:Class GO:0002351 biolink:NamedThing serotonin production involved in inflammatory response The synthesis or release of serotonin following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl serotonin production involved in acute inflammatory response biological_process owl:Class GO:1903930 biolink:NamedThing regulation of pyrimidine-containing compound salvage Any process that modulates the frequency, rate or extent of pyrimidine-containing compound salvage. tmpzr1t_l9r_go_relaxed.owl regulation of pyrimidine salvage al 2015-02-12T14:09:05Z biological_process owl:Class GO:0008655 biolink:NamedThing pyrimidine-containing compound salvage Any process that generates a pyrimidine-containing compound, a nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl pyrimidine salvage biological_process owl:Class GO:0015138 biolink:NamedThing fumarate transmembrane transporter activity Enables the transfer of fumarate from one side of a membrane to the other. Fumarate is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. tmpzr1t_l9r_go_relaxed.owl dicarboxylate (succinate/fumarate/malate) antiporter activity molecular_function owl:Class GO:0015741 biolink:NamedThing fumarate transport The directed movement of fumarate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048266 biolink:NamedThing behavioral response to pain Any process that results in a change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. tmpzr1t_l9r_go_relaxed.owl behavioural response to pain biological_process owl:Class GO:0048265 biolink:NamedThing response to pain Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. tmpzr1t_l9r_go_relaxed.owl physiological response to pain GO:0048267 biological_process owl:Class GO:1903138 biolink:NamedThing negative regulation of cell wall integrity MAPK cascade Any process that stops, prevents or reduces the frequency, rate or extent of MAPK cascade involved in cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of Pmk1 MAPK cell integrity signaling|down regulation of MAPK cascade involved in cell wall biogenesis|inhibition of MAPK cascade involved in cell wall organization or biogenesis|down regulation of Pmk1 MAPK cell integrity signaling|negative regulation of MAPKKK cascade involved in cell wall biogenesis|down regulation of cell integrity MAPK pathway|downregulation of Mpk1 cascade|down regulation of Mpk1 cascade|negative regulation of cell integrity MAPK pathway|downregulation of PMK1-MAPK signal transduction pathway|negative regulation of MAPK cascade involved in cell wall organization or biogenesis|inhibition of PMK1-MAPK signal transduction pathway|inhibition of cell wall biogenesis, MAPKKK cascade|downregulation of MAPK cascade involved in cell wall biogenesis|negative regulation of MAPK cascade involved in cell wall biogenesis|down-regulation of MAPK cascade involved in cell wall biogenesis|downregulation of Slt2 cascade|down regulation of PMK1-MAPK signal transduction pathway|downregulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|inhibition of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|downregulation of MAPKKK cascade involved in cell wall biogenesis|negative regulation of Mpk1 cascade|down regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|down regulation of MAPK cascade involved in cell wall organization or biogenesis|negative regulation of Slt2 cascade|inhibition of Slt2 cascade|down-regulation of Slt2 cascade|negative regulation of PMK1-MAPK signal transduction pathway|inhibition of MAPK cascade involved in cell wall biogenesis|downregulation of cell integrity MAPK pathway|down-regulation of Mpk1 cascade|down-regulation of PMK1-MAPK signal transduction pathway|down-regulation of cell wall biogenesis, MAPKKK cascade|inhibition of Pmk1 MAPK cell integrity signaling|down-regulation of Pmk1 MAPK cell integrity signaling|down-regulation of MAPKKK cascade involved in cell wall biogenesis|downregulation of MAPK cascade involved in cell wall organization or biogenesis|down regulation of cell wall biogenesis, MAPKKK cascade|down-regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|down regulation of Slt2 cascade|inhibition of MAPKKK cascade involved in cell wall biogenesis|negative regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|downregulation of cell wall biogenesis, MAPKKK cascade|down-regulation of cell integrity MAPK pathway|down regulation of MAPKKK cascade involved in cell wall biogenesis|down-regulation of MAPK cascade involved in cell wall organization or biogenesis|inhibition of Mpk1 cascade|downregulation of Pmk1 MAPK cell integrity signaling|negative regulation of cell wall biogenesis, MAPKKK cascade|inhibition of cell integrity MAPK pathway https://github.com/geneontology/go-ontology/issues/20131 mah 2014-07-01T10:21:59Z biological_process owl:Class GO:0000196 biolink:NamedThing cell wall integrity MAPK cascade A MAPK cascade that contributes to cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl PMK1-MAPK signal transduction pathway|cell wall biogenesis, MAPKKK cascade|Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|Pmk1 MAPK cell integrity signaling|MAPK cascade involved in cell wall organization or biogenesis|Mpk1 cascade|cell integrity MAPK pathway|MAPK cascade involved in cell wall biogenesis|Slt2 cascade|MAPKKK cascade involved in cell wall biogenesis biological_process owl:Class GO:0061224 biolink:NamedThing mesonephric glomerulus development The progression of the mesonephric glomerulus over time from its initial formation until its mature state. The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T01:26:00Z biological_process owl:Class GO:0035721 biolink:NamedThing intraciliary retrograde transport The directed movement of large protein complexes along microtubules from the tip of a cilium (also called flagellum) toward the cell body, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl intraflagellar retrograde transport Note that we deem cilium and microtubule-based flagellum to be equivalent. bf 2011-03-07T11:25:32Z biological_process owl:Class GO:0045650 biolink:NamedThing negative regulation of macrophage differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of macrophage differentiation|downregulation of macrophage differentiation|down regulation of macrophage differentiation|down-regulation of macrophage differentiation biological_process owl:Class GO:0030080 biolink:NamedThing B875 antenna complex Protein complex that surrounds and transfers excitation energy directly to the bacterial reaction center; binds bacteriochlorophyll a and has a single absorption band between 870 and 890 nm. tmpzr1t_l9r_go_relaxed.owl LH1 complex|light harvesting complex I cellular_component owl:Class GO:0030078 biolink:NamedThing light-harvesting complex, core complex Light harvesting complex associated with the reaction complex of photosynthetic purple bacteria. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990768 biolink:NamedThing gastric mucosal blood circulation The flow of blood through the gastric mucosa of an animal, enabling the transport of nutrients and the removal of waste products. tmpzr1t_l9r_go_relaxed.owl stomach mucosal blood circulation sl 2015-06-10T20:11:09Z biological_process owl:Class GO:0014844 biolink:NamedThing myoblast proliferation involved in skeletal muscle regeneration The multiplication or reproduction of myoblasts, resulting in the expansion of the cell population. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005763 biolink:NamedThing mitochondrial small ribosomal subunit The smaller of the two subunits of a mitochondrial ribosome. tmpzr1t_l9r_go_relaxed.owl 28S ribosomal subunit, mitochondrial|mitochondrial ribosomal small subunit complex|mitochondrial ribosomal SSU complex cellular_component owl:Class GO:0005761 biolink:NamedThing mitochondrial ribosome A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes. tmpzr1t_l9r_go_relaxed.owl 55S ribosome, mitochondrial cellular_component owl:Class GO:1902148 biolink:NamedThing positive regulation of response to cytokinesis checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to cytokinesis checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of response to signal involved in cytokinesis checkpoint|up-regulation of cytokinesis checkpoint effector process|up regulation of response to cytokinesis checkpoint signaling|activation of response to cytokinesis checkpoint signaling|activation of cytokinesis checkpoint effector process|positive regulation of cytokinesis checkpoint effector process|up regulation of cytokinesis checkpoint effector process|upregulation of cytokinesis checkpoint effector process|up-regulation of response to signal involved in cytokinesis checkpoint|up-regulation of response to cytokinesis checkpoint signaling|activation of response to signal involved in cytokinesis checkpoint|up regulation of response to signal involved in cytokinesis checkpoint|upregulation of response to cytokinesis checkpoint signaling|upregulation of response to signal involved in cytokinesis checkpoint jl 2013-05-21T15:43:58Z GO:1902150 biological_process owl:Class GO:0072399 biolink:NamedThing response to cytokinesis checkpoint signaling A process that occurs in response to signals generated as a result of cytokinesis checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in cytokinesis checkpoint|cytokinesis checkpoint effector process mah 2010-12-08T03:23:32Z GO:0072420 biological_process owl:Class GO:0042316 biolink:NamedThing penicillin metabolic process The chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system. Penicillins are produced naturally during the growth of various microfungi of the genera Penicillium and Aspergillus. tmpzr1t_l9r_go_relaxed.owl penicillin metabolism biological_process owl:Class GO:0035677 biolink:NamedThing posterior lateral line neuromast hair cell development The process whose specific outcome is the progression of a posterior lateral line neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:04:57Z biological_process owl:Class GO:0048923 biolink:NamedThing posterior lateral line neuromast hair cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast hair cell. (N.B. This may be development of neuromast hair cell type or a set of cell of neuromast hair cell type. This will involve the change of a cell or set of cells from one cell identity to another). Hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060721 biolink:NamedThing regulation of spongiotrophoblast cell proliferation Any process that modulates the rate, frequency or extent of spongiotrophoblast cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T09:57:27Z biological_process owl:Class GO:0060720 biolink:NamedThing spongiotrophoblast cell proliferation The multiplication or reproduction of spongiotrophoblast cells, resulting in the expansion of the population in the spongiotrophoblast layer. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T09:50:35Z biological_process owl:Class GO:1903528 biolink:NamedThing regulation of dCDP biosynthetic process Any process that modulates the frequency, rate or extent of dCDP biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of dCDP synthesis|regulation of dCDP biosynthesis|regulation of dCDP formation|regulation of dCDP anabolism al 2014-10-07T15:01:18Z biological_process owl:Class GO:0006240 biolink:NamedThing dCDP biosynthetic process The chemical reactions and pathways resulting in the formation of dCDP, deoxycytidine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl dCDP synthesis|dCDP anabolism|dCDP formation|dCDP biosynthesis biological_process owl:Class GO:0051630 biolink:NamedThing acetylcholine uptake The directed movement of acetylcholine into a cell, typically presynaptic neurons or glial cells. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues. tmpzr1t_l9r_go_relaxed.owl acetylcholine import biological_process owl:Class GO:0045603 biolink:NamedThing positive regulation of endothelial cell differentiation Any process that activates or increases the frequency, rate or extent of endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of endothelial cell differentiation|stimulation of endothelial cell differentiation|activation of endothelial cell differentiation|up-regulation of endothelial cell differentiation|upregulation of endothelial cell differentiation biological_process owl:Class GO:0045446 biolink:NamedThing endothelial cell differentiation The process in which a mesodermal, bone marrow or neural crest cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051258 biolink:NamedThing protein polymerization The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. tmpzr1t_l9r_go_relaxed.owl protein polymer biosynthetic process|protein polymer formation|protein polymer biosynthesis biological_process owl:Class GO:0004326 biolink:NamedThing tetrahydrofolylpolyglutamate synthase activity Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1). tmpzr1t_l9r_go_relaxed.owl folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase activity|folylpoly-gamma-glutamate synthase activity|folylpolyglutamyl synthetase activity|N10-formyltetrahydropteroyldiglutamate synthetase activity|tetrahydropteroyl-[gamma-polyglutamate]:L-glutamate gamma-ligase (ADP-forming)|tetrahydrofolate synthase activity|folylpolyglutamate synthetase activity|folylpolyglutamate synthase activity|formyltetrahydropteroyldiglutamate synthetase activity|tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming) activity|tetrahydrofolyl-[gamma-Glu]n:L-glutamate gamma-ligase (ADP-forming)|FPGS activity|folylpoly(gamma-glutamate) synthase activity|N(10)-formyltetrahydropteroyldiglutamate synthetase activity|folate polyglutamate synthetase activity RHEA:10580|Reactome:R-HSA-200682|Reactome:R-HSA-197958|EC:6.3.2.17|MetaCyc:FOLYLPOLYGLUTAMATESYNTH-RXN|Reactome:R-HSA-200681 molecular_function owl:Class GO:0046901 biolink:NamedThing tetrahydrofolylpolyglutamate biosynthetic process The chemical reactions and pathways resulting in the formation of tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues. tmpzr1t_l9r_go_relaxed.owl tetrahydrofolylpolyglutamate formation|THF polyglutamylation|tetrahydrofolyl-[Glu](n) biosynthesis|tetrahydrofolyl-[Glu](n) biosynthetic process|tetrahydrofolylpolyglutamate biosynthesis|tetrahydrofolylpolyglutamate synthesis|tetrahydrofolylpolyglutamate anabolism|tetrahydrofolate polyglutamylation|folic acid-containing compound polyglutamylation biological_process owl:Class GO:0048916 biolink:NamedThing posterior lateral line development The process whose specific outcome is the progression of the posterior lateral line over time, from its formation to the mature structure. The posterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body and trunk of all fishes and most amphibians. The posterior lateral line develops from cranial ectodermal placodes situated behind the ear. tmpzr1t_l9r_go_relaxed.owl PLL development biological_process owl:Class GO:0048915 biolink:NamedThing posterior lateral line system development The process whose specific outcome is the progression of the posterior lateral line system over time, from its formation to the mature structure. The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. tmpzr1t_l9r_go_relaxed.owl PLL biological_process owl:Class GO:0048801 biolink:NamedThing antennal joint morphogenesis The process in which the anatomical structures of the antennal joint are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001177 biolink:NamedThing negative regulation of mediator complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of mediator complex assembly. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-02T11:22:23Z biological_process owl:Class GO:1903706 biolink:NamedThing regulation of hemopoiesis Any process that modulates the frequency, rate or extent of hemopoiesis. tmpzr1t_l9r_go_relaxed.owl regulation of blood cell formation|regulation of haemopoiesis|regulation of hematopoiesis|regulation of blood cell biosynthesis An example of this is Atg7 in mouse (UniProt symbol, Q9D906) in PMID:20080761, inferred from mutant phenotype. pad 2014-12-04T15:34:13Z biological_process owl:Class GO:0060540 biolink:NamedThing diaphragm morphogenesis The process in which the anatomical structures of the diaphragm are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:47:51Z biological_process owl:Class GO:0060539 biolink:NamedThing diaphragm development The progression of the diaphragm over time from its initial formation to the mature structure. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:44:56Z biological_process owl:Class GO:0070576 biolink:NamedThing vitamin D 24-hydroxylase activity Catalysis of the hydroxylation of C-24 of any form of vitamin D. tmpzr1t_l9r_go_relaxed.owl ergocalciferol 24-hydroxylase activity|vitamin D2 24-hydroxylase activity|calciferol 24-hydroxylase activity|cholecalciferol 24-hydroxylase activity|vitamin D3 24-hydroxylase activity mah 2009-04-21T02:20:52Z molecular_function owl:Class GO:1904429 biolink:NamedThing regulation of t-circle formation Any process that modulates the frequency, rate or extent of t-circle formation. tmpzr1t_l9r_go_relaxed.owl regulation of telomeric circle formation nc 2015-07-03T15:15:45Z biological_process owl:Class GO:0015986 biolink:NamedThing ATP synthesis coupled proton transport The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. tmpzr1t_l9r_go_relaxed.owl chemiosmosis biological_process owl:Class GO:0002003 biolink:NamedThing angiotensin maturation The process leading to the attainment of the full functional capacity of angiotensin by conversion of angiotensinogen into mature angiotensin in the blood. tmpzr1t_l9r_go_relaxed.owl angiotensin catabolic process in blood GO:0002005 biological_process owl:Class GO:0002002 biolink:NamedThing regulation of angiotensin levels in blood The process that modulates the level of any of the various angiotensinogen proteolytic products in the blood. This occurs by the proteolytic cleavage of angiotensinogen, and its proteolytic products, to create a variety of active peptide hormones, such as angiotensin I and angiotensin II, as well as through the removal of these peptides from the circulation. tmpzr1t_l9r_go_relaxed.owl control of blood angiotensin level|regulation of blood angiotensin level|control of angiotensin levels in blood https://github.com/geneontology/go-ontology/issues/15424 biological_process owl:Class GO:0003311 biolink:NamedThing pancreatic D cell differentiation The process in which relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin. tmpzr1t_l9r_go_relaxed.owl pancreatic delta cell differentiation dph 2009-10-26T09:30:27Z biological_process owl:Class GO:0031018 biolink:NamedThing endocrine pancreas development The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008195 biolink:NamedThing phosphatidate phosphatase activity Catalysis of the reaction: a 1,2-diacylglycerol 3-phosphate + H2O = a 1,2-diacyl-sn-glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatic acid phosphohydrolase activity|phosphatic acid phosphatase activity|phosphatidic acid phosphatase activity|phosphatidate phosphohydrolase activity|3-sn-phosphatidate phosphohydrolase activity|acid phosphatidyl phosphatase activity Reactome:R-HSA-1483203|Reactome:R-HSA-75899|Reactome:R-HSA-163750|Reactome:R-HSA-163689|EC:3.1.3.4|Reactome:R-HSA-164056|Reactome:R-HSA-2029468|Reactome:R-HSA-390329|MetaCyc:PHOSPHATIDATE-PHOSPHATASE-RXN|RHEA:27429|Reactome:R-HSA-6797630|Reactome:R-HSA-5221130|Reactome:R-HSA-163688 GO:0004606 molecular_function owl:Class GO:0043301 biolink:NamedThing negative regulation of leukocyte degranulation Any process that stops, prevents, or reduces the rate of leukocyte degranulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of leucocyte degranulation|down regulation of leukocyte degranulation|down-regulation of leukocyte degranulation|inhibition of leukocyte degranulation|downregulation of leukocyte degranulation|negative regulation of immune cell degranulation biological_process owl:Class GO:0048388 biolink:NamedThing endosomal lumen acidification Any process that reduces the pH of the endosomal lumen, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007032 biolink:NamedThing endosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes. tmpzr1t_l9r_go_relaxed.owl endosome organization and biogenesis|endosome organisation biological_process owl:Class GO:0021796 biolink:NamedThing cerebral cortex regionalization The regionalization process that results in the creation of areas within the cerebral cortex that will direct the behavior of cell migration and differentiation as the cortex develops. tmpzr1t_l9r_go_relaxed.owl cerebral cortex arealization|cerebral cortex pattern formation|cerebral cortex pattern biosynthesis biological_process owl:Class GO:0005579 biolink:NamedThing membrane attack complex A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow. tmpzr1t_l9r_go_relaxed.owl membrane attack complex protein beta2 chain|MAC|TCC|terminal complement complex|membrane attack complex protein alphaM chain Wikipedia:Complement_membrane_attack_complex cellular_component owl:Class GO:0032534 biolink:NamedThing regulation of microvillus assembly A process that modulates the formation of a microvillus. tmpzr1t_l9r_go_relaxed.owl regulation of microvillus biogenesis biological_process owl:Class GO:0030033 biolink:NamedThing microvillus assembly Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell. tmpzr1t_l9r_go_relaxed.owl microvillus biogenesis biological_process owl:Class GO:0033583 biolink:NamedThing rhabdomere membrane The portion of the plasma membrane surrounding the rhabdomere. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016028 biolink:NamedThing rhabdomere The specialized microvilli-containing organelle on the apical surfaces of a photoreceptor cell containing the visual pigment rhodopsin and most of the proteins involved in phototransduction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002007 biolink:NamedThing detection of hypoxic conditions in blood by chemoreceptor signaling The process in which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the carotid bodies and the aortic bodies. tmpzr1t_l9r_go_relaxed.owl detection of hypoxic conditions in blood by chemoreceptor signalling biological_process owl:Class GO:0021697 biolink:NamedThing cerebellar cortex formation The process that gives rise to the cerebellar cortex. This process pertains to the initial formation of a structure from unspecified parts. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009526 biolink:NamedThing plastid envelope The double lipid bilayer enclosing a plastid and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014052 biolink:NamedThing regulation of gamma-aminobutyric acid secretion Any process that modulates the frequency, rate or extent of the regulated release of gamma-aminobutyric acid. tmpzr1t_l9r_go_relaxed.owl regulation of GABA secretion biological_process owl:Class GO:1900146 biolink:NamedThing negative regulation of nodal signaling pathway involved in determination of left/right asymmetry Any process that stops, prevents or reduces the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl down-regulation of nodal signaling pathway involved in determination of left/right asymmetry|inhibition of nodal signaling pathway involved in determination of left/right asymmetry|negative regulation of nodal signalling pathway involved in determination of left/right asymmetry|down regulation of nodal signaling pathway involved in determination of left/right asymmetry|downregulation of nodal signaling pathway involved in determination of left/right asymmetry bf 2012-03-06T11:00:36Z biological_process owl:Class GO:0038107 biolink:NamedThing nodal signaling pathway involved in determination of left/right asymmetry A series of molecular signals initiated by the binding of a nodal protein to an activin receptor on the surface of a target cell, which contributes to the establishment of an organism's body plan or part of an organism with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl nodal signalling pathway involved in determination of left/right asymmetry|regulation of transcription from RNA polymerase II promoter by nodal signaling pathway, involved in determination of left/right symmetry bf 2012-02-29T10:18:59Z biological_process owl:Class GO:2000236 biolink:NamedThing negative regulation of tRNA processing Any process that stops, prevents, or reduces the frequency, rate or extent of tRNA processing. tmpzr1t_l9r_go_relaxed.owl negative regulation of tRNA maturation mah 2010-11-10T12:15:13Z biological_process owl:Class GO:0120228 biolink:NamedThing outer dynein arm docking complex A complex which stabilizes the binding of and correctly positions the outer dynein arm complex along an A-tubule of the flagellar axoneme outer doublet microtubules. tmpzr1t_l9r_go_relaxed.owl ODA docking complex|ODA-DC https://github.com/geneontology/go-ontology/issues/19588 krc 2020-06-05T23:30:44Z cellular_component owl:Class GO:1905140 biolink:NamedThing regulation of apical ectodermal ridge formation Any process that modulates the frequency, rate or extent of apical ectodermal ridge formation. tmpzr1t_l9r_go_relaxed.owl regulation of apical epidermal ridge formation|regulation of AER formation|regulation of crista ectodermalis apicalis formation dph 2016-04-13T12:16:40Z biological_process owl:Class GO:0071007 biolink:NamedThing U2-type catalytic step 2 spliceosome A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian U2-type spliceosomal complex C|major catalytic step 2 spliceosome|GT-AG catalytic step 2 spliceosome|yeast U2-type spliceosomal complex A2-2|mammalian U2-type spliceosomal complex C1 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005688 biolink:NamedThing U6 snRNP A ribonucleoprotein complex that contains small nuclear RNA U6, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6 snRNP, most of which remain associated with the U6 snRNA both while the U6 snRNP is free or assembled into the U4/U6 snRNP or into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U6 cellular_component owl:Class GO:0048657 biolink:NamedThing anther wall tapetum cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an anther cell wall tapetum cell. The tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. tmpzr1t_l9r_go_relaxed.owl tapetal cell differentiation biological_process owl:Class GO:0004465 biolink:NamedThing lipoprotein lipase activity Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate, where the triacylglycerol is part of a lipoprotein. tmpzr1t_l9r_go_relaxed.owl clearing factor lipase activity|postheparin esterase activity|diacylglycerol lipase activity|postheparin lipase activity|diglyceride lipase activity|triacylglycero-protein acylhydrolase activity|diacylglycerol hydrolase activity|lipemia-clearing factor Reactome:R-HSA-1482811|Reactome:R-HSA-174757|Reactome:R-HSA-8980228|EC:3.1.1.34|Reactome:R-HSA-6789310|Reactome:R-HSA-2395768|Reactome:R-HSA-8979996|MetaCyc:LIPOPROTEIN-LIPASE-RXN molecular_function owl:Class GO:0060066 biolink:NamedThing oviduct development The reproductive developmental process whose specific outcome is the progression of an oviduct over time, from its formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. tmpzr1t_l9r_go_relaxed.owl Mullerian tract development|fallopian tube development biological_process owl:Class GO:0099174 biolink:NamedThing regulation of presynapse organization Any process that modulates the physical form of a presynapse. tmpzr1t_l9r_go_relaxed.owl regulation of presynapse organisation|regulation of presynapse organization and biogenesis|regulation of presynapse structure biological_process owl:Class GO:2000068 biolink:NamedThing regulation of defense response to insect Any process that modulates the frequency, rate or extent of defense response to insect. tmpzr1t_l9r_go_relaxed.owl regulation of physiological defense response to insect tb 2010-08-23T09:30:00Z biological_process owl:Class GO:0002213 biolink:NamedThing defense response to insect A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism. tmpzr1t_l9r_go_relaxed.owl physiological defense response to insect GO:0002214 biological_process owl:Class GO:0060579 biolink:NamedThing ventral spinal cord interneuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a ventral spinal cord interneuron. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-07T12:21:13Z biological_process owl:Class GO:0021513 biolink:NamedThing spinal cord dorsal/ventral patterning The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord. tmpzr1t_l9r_go_relaxed.owl spinal cord dorsal-ventral patterning|spinal cord dorsoventral patterning biological_process owl:Class GO:0044600 biolink:NamedThing protein guanylyltransferase activity Catalysis of the reaction: GTP + protein = diphosphate + guanylyl-protein; mediates the addition of an guanylyl (guanosine 5'-monophosphate; GMP group) to specific residues of target proteins. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-01T04:00:34Z molecular_function owl:Class GO:0018260 biolink:NamedThing protein guanylylation The addition of phospho-guanosine to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid guanylylation biological_process owl:Class GO:1903427 biolink:NamedThing negative regulation of reactive oxygen species biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of reactive oxygen species biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of reactive oxygen species synthesis|down-regulation of reactive oxygen species formation|down-regulation of reactive oxygen species generation|down-regulation of ROS generation|down-regulation of reactive oxygen species biosynthesis|inhibition of reactive oxygen species generation|down-regulation of reactive oxygen species synthesis|inhibition of reactive oxygen species anabolism|down regulation of reactive oxygen species synthesis|down regulation of reactive oxygen species generation|negative regulation of ROS formation|downregulation of ROS generation|downregulation of reactive oxygen species anabolism|down regulation of ROS formation|downregulation of reactive oxygen species biosynthetic process|prevention of ROS generation|negative regulation of reactive oxygen species formation|down regulation of reactive oxygen species formation|inhibition of ROS formation|negative regulation of reactive oxygen species synthesis|down-regulation of reactive oxygen species anabolism|inhibition of reactive oxygen species biosynthetic process|negative regulation of reactive oxygen species anabolism|down regulation of reactive oxygen species biosynthetic process|down regulation of reactive oxygen species biosynthesis|downregulation of reactive oxygen species formation|down regulation of reactive oxygen species anabolism|down regulation of ROS generation|inhibition of ROS generation|inhibition of reactive oxygen species biosynthesis|downregulation of reactive oxygen species biosynthesis|down-regulation of ROS formation|inhibition of reactive oxygen species formation|negative regulation of ROS generation|downregulation of reactive oxygen species generation|negative regulation of reactive oxygen species biosynthesis|downregulation of reactive oxygen species synthesis|negative regulation of reactive oxygen species generation|down-regulation of reactive oxygen species biosynthetic process|downregulation of ROS formation bf 2014-09-11T10:01:56Z biological_process owl:Class GO:1903409 biolink:NamedThing reactive oxygen species biosynthetic process The chemical reactions and pathways resulting in the formation of reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. tmpzr1t_l9r_go_relaxed.owl reactive oxygen species biosynthesis|reactive oxygen species anabolism|ROS formation|reactive oxygen species synthesis|reactive oxygen species generation|reactive oxygen species formation|ROS generation bf 2014-09-03T09:19:13Z biological_process owl:Class GO:0010241 biolink:NamedThing ent-kaurene oxidation to kaurenoic acid The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase. tmpzr1t_l9r_go_relaxed.owl ent-kaurene oxidation to ent-kaur-16-en-19-oate|ent-kaurene oxidation to kaurenoic acid by ent-kaurene oxidase|ent-kaurene oxidation to ent-kaurenoate Note that this term was in molecular function but was moved to biological process as it represents three successive reactions. biological_process owl:Class GO:0052617 biolink:NamedThing ent-kaur-16-en-19-al oxidase activity Catalysis of the reaction: NADPH + ent-kaur-16-en-19-al + oxygen = H2O + NADP+ + ent-kaurenoate. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.86|MetaCyc:RXN-7580|RHEA:10928 molecular_function owl:Class GO:0004445 biolink:NamedThing inositol-polyphosphate 5-phosphatase activity Catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl L-myo-inositol 1,4,5-trisphosphate-monoesterase activity|type I inositol-polyphosphate phosphatase activity|Ins(1,4,5)P(3) 5-phosphatase activity|D-myo-inositol 1,4,5-triphosphate 5-phosphatase activity|Ins(1,4,5)P3/Ins(1,3,4,5)P4 5-phosphatase activity|InsP3/Ins(1,3,4,5)P4 5-phosphatase activity|InsP(3)/Ins(1,3,4,5)P(4) 5-phosphatase activity|inositol triphosphate 5-phosphomonoesterase activity|Ins(1,4,5)P3 5-phosphatase activity|D-myo-inositol 1,4,5-trisphosphate 5-phosphatase activity|1D-myo-inositol-1,4,5-trisphosphate 5-phosphohydrolase activity|myo-inositol-1,4,5-trisphosphate 5-phosphatase activity|type II inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol trisphosphate phosphomonoesterase activity|type II inositol polyphosphate 5-phosphatase activity|inositol phosphate 5-phosphomonoesterase activity|inositol polyphosphate-5-phosphatase activity|5PTase activity|inositol 1,4,5-trisphosphate phosphatase activity|D-myo-inositol(1,4,5)/(1,3,4,5)-polyphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate/1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inosine triphosphatase activity EC:3.1.3.56 Note that this is a compound function and should be replaced by 'GO:0052659 : inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity' and 'GO:0052658 : inositol-1,4,5-trisphosphate 5-phosphatase activity'. molecular_function owl:Class GO:1902663 biolink:NamedThing negative regulation of peptidyl-L-cysteine S-palmitoylation Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-L-cysteine S-palmitoylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|negative regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|down regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|downregulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|negative regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|down-regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|negative regulation of peptidyl-cysteine S-palmitoylation|down-regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|down-regulation of peptidyl-cysteine S-palmitoylation|down regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|down regulation of peptidyl-L-cysteine S-palmitoylation|inhibition of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|inhibition of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|inhibition of peptidyl-cysteine S-palmitoylation|downregulation of peptidyl-L-cysteine S-palmitoylation|negative regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|inhibition of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|downregulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|downregulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|down regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|inhibition of peptidyl-L-cysteine S-palmitoylation|down regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|down-regulation of peptidyl-L-cysteine S-palmitoylation|inhibition of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|down-regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|negative regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|down regulation of peptidyl-cysteine S-palmitoylation|downregulation of peptidyl-cysteine S-palmitoylation|downregulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine mm2 2014-01-29T11:33:19Z biological_process owl:Class GO:0018230 biolink:NamedThing peptidyl-L-cysteine S-palmitoylation The covalent attachment of a palmitoyl group to a sulfur (S) atom within a cysteine residue to form peptidyl-S-palmitoyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|peptidyl-cysteine S-palmitoylation|peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine RESID:AA0106 Palmitoylation of a non-terminal cysteine residue always occurs on a sulfur (S) atom. biological_process owl:Class GO:0014027 biolink:NamedThing secondary neural tube rod cavitation The process of medullary cavitation, which is the formation of a lumen in the medullary cord during secondary neurulation, producing the neural tube. tmpzr1t_l9r_go_relaxed.owl medullary rod cavitation biological_process owl:Class GO:0014021 biolink:NamedThing secondary neural tube formation The formation of the neural tube by coalescence of mesenchymal cells followed by their conversion to epithelial cells to form a solid cord that subsequently hollows out (cavitates) to create a hollow tube. Secondary neurulation is the typical mechanism of formation of the neural tube posterior to the posterior neuropore in mammals. tmpzr1t_l9r_go_relaxed.owl secondary neurulation|medullary cord formation|medullary cord biosynthesis|neural rod formation GO:0014026 biological_process owl:Class GO:1905020 biolink:NamedThing positive regulation of methionine-tRNA ligase activity Any process that activates or increases the frequency, rate or extent of methionine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl activation of methionine-tRNA ligase activity|up-regulation of methionine-tRNA ligase activity|activation of methionyl-transfer ribonucleic acid synthetase activity|positive regulation of MetRS activity|up-regulation of methionyl-transfer RNA synthetase activity|positive regulation of methionine translase activity|activation of methionine translase activity|positive regulation of methionyl-transfer RNA synthetase activity|up-regulation of methionyl-transfer ribonucleic acid synthetase activity|upregulation of methionyl-transfer RNA synthetase activity|positive regulation of L-methionine:tRNAMet ligase (AMP-forming)|positive regulation of methionyl-transfer ribonucleic acid synthetase activity|positive regulation of methionyl-transfer ribonucleate synthetase activity|up regulation of MetRS activity|up regulation of methionine translase activity|activation of methionyl-transfer RNA synthetase activity|up regulation of methionyl-transfer ribonucleate synthetase activity|upregulation of MetRS activity|upregulation of methionine-tRNA ligase activity|activation of L-methionine:tRNAMet ligase (AMP-forming)|up regulation of methionyl-transfer ribonucleic acid synthetase activity|activation of MetRS activity|up regulation of methionyl-tRNA synthetase activity|upregulation of methionyl-transfer ribonucleate synthetase activity|upregulation of methionine translase activity|upregulation of L-methionine:tRNAMet ligase (AMP-forming)|upregulation of methionyl-transfer ribonucleic acid synthetase activity|activation of methionyl-tRNA synthetase activity|up-regulation of L-methionine:tRNAMet ligase (AMP-forming)|up regulation of L-methionine:tRNAMet ligase (AMP-forming)|up-regulation of MetRS activity|upregulation of methionyl-tRNA synthetase activity|up regulation of methionyl-transfer RNA synthetase activity|up-regulation of methionyl-tRNA synthetase activity|up regulation of methionine-tRNA ligase activity|positive regulation of methionyl-tRNA synthetase activity|up-regulation of methionyl-transfer ribonucleate synthetase activity|up-regulation of methionine translase activity|activation of methionyl-transfer ribonucleate synthetase activity sl 2016-03-03T19:02:57Z biological_process owl:Class GO:0004825 biolink:NamedThing methionine-tRNA ligase activity Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met). tmpzr1t_l9r_go_relaxed.owl MetRS activity|L-methionine:tRNAMet ligase (AMP-forming)|methionine translase activity|methionyl-tRNA synthetase activity|methionyl-transfer RNA synthetase activity|methionyl-transfer ribonucleate synthetase activity|methionyl-transfer ribonucleic acid synthetase activity MetaCyc:METHIONINE--TRNA-LIGASE-RXN|RHEA:13481|Reactome:R-HSA-380157|Reactome:R-HSA-379994|EC:6.1.1.10 molecular_function owl:Class GO:0004252 biolink:NamedThing serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl blood coagulation factor activity|serine elastase activity Reactome:R-HSA-381461|Reactome:R-HSA-2168923|Reactome:R-HSA-8855825|Reactome:R-HSA-2482180|Reactome:R-HSA-158747|Reactome:R-HSA-9699007|Reactome:R-HSA-8874212|Reactome:R-HSA-8874206|Reactome:R-HSA-158164|Reactome:R-HSA-2022411|Reactome:R-HSA-1604732|Reactome:R-HSA-1592316|Reactome:R-HSA-1604741|Reactome:R-HSA-9694661|Reactome:R-HSA-3785684|Reactome:R-HSA-183130|Reactome:R-HSA-140696|Reactome:R-HSA-158942|Reactome:R-HSA-183122|Reactome:R-HSA-158137|Reactome:R-HSA-1592436|Reactome:R-HSA-9033515|Reactome:R-HSA-9023196|Reactome:R-HSA-2129357|Reactome:R-HSA-6807224|Reactome:R-HSA-381798|Reactome:R-HSA-1454843|Reactome:R-HSA-9673223|Reactome:R-HSA-9670874|Reactome:R-HSA-166792|Reactome:R-HSA-5607002|Reactome:R-HSA-9033524|Reactome:R-HSA-9033529|Reactome:R-HSA-6800198|Reactome:R-HSA-6800200|Reactome:R-HSA-8874204|Reactome:R-HSA-1474197|Reactome:R-HSA-1602473|Reactome:R-HSA-2214330|Reactome:R-HSA-186785|Reactome:R-HSA-140769|Reactome:R-HSA-170844|Reactome:R-HSA-3928657|Reactome:R-HSA-9023632|Reactome:R-HSA-9653249|Reactome:R-HSA-1566981|Reactome:R-HSA-2168960|Reactome:R-HSA-8874186|Reactome:R-HSA-1592278|Reactome:R-HSA-9033490|Reactome:R-HSA-187020|Reactome:R-HSA-140823|Reactome:R-HSA-159868|Reactome:R-HSA-9033520|Reactome:R-HSA-1592314|Reactome:R-HSA-8850831|Reactome:R-HSA-8865276|Reactome:R-HSA-1912369|Reactome:R-HSA-1602466|Reactome:R-HSA-977371|Reactome:R-HSA-400459|Reactome:R-HSA-173680|Reactome:R-HSA-9033506|Reactome:R-HSA-1566979|Reactome:R-HSA-1602484|Reactome:R-HSA-1912372|Reactome:R-HSA-163798|Reactome:R-HSA-9023627|Reactome:R-HSA-3788061|Reactome:R-HSA-381500|Reactome:R-HSA-158750|Reactome:R-HSA-381135|Reactome:R-HSA-5591040|Reactome:R-HSA-8874205|Reactome:R-HSA-9668253|Reactome:R-HSA-976743|Reactome:R-HSA-381466|Reactome:R-HSA-2172405|Reactome:R-HSA-1604731|Reactome:R-HSA-140700|Reactome:R-HSA-173631|Reactome:R-HSA-158766|Reactome:R-HSA-140777|Reactome:R-HSA-159796|Reactome:R-HSA-140870|Reactome:R-HSA-114697|Reactome:R-HSA-1592297|Reactome:R-HSA-9686731|Reactome:R-HSA-1655842|Reactome:R-HSA-1181152|Reactome:R-HSA-139893|Reactome:R-HSA-166753|Reactome:R-HSA-174551|Reactome:R-HSA-8849826|Reactome:R-HSA-2534206|Reactome:R-HSA-140599|Reactome:R-HSA-173626|Reactome:R-HSA-2514823|Reactome:R-HSA-141040|Reactome:R-HSA-422051|Reactome:R-HSA-1592398|Reactome:R-HSA-5578783|Reactome:R-HSA-2471621|Reactome:R-HSA-422021|Reactome:R-HSA-2534260|Reactome:R-HSA-158333|Reactome:R-HSA-1592362|Reactome:R-HSA-2514772|Reactome:R-HSA-9023178|Reactome:R-HSA-140840|Reactome:R-HSA-6801687|Reactome:R-HSA-977615|Reactome:R-HSA-1604722|Reactome:R-HSA-9668365|Reactome:R-HSA-9023626|Reactome:R-HSA-1604690|Reactome:R-HSA-159771|Reactome:R-HSA-5210935|Reactome:R-HSA-163843|Reactome:R-HSA-5691512|Reactome:R-HSA-1604712|Reactome:R-HSA-400492|Reactome:R-HSA-159733|Reactome:R-HSA-1602488|Reactome:R-HSA-158313|Reactome:R-HSA-140664|Reactome:R-HSA-159728|Reactome:R-HSA-265301|Reactome:R-HSA-158744|Reactome:R-HSA-158419|Reactome:R-HSA-1604360|EC:3.4.21.-|Reactome:R-HSA-140736|Reactome:R-HSA-1799329|Reactome:R-HSA-158311|Reactome:R-HSA-1592371|Reactome:R-HSA-8865275|Reactome:R-HSA-3814820|Reactome:R-HSA-171288|Reactome:R-HSA-158300|Reactome:R-HSA-2471842|Reactome:R-HSA-166817|Reactome:R-HSA-158925|Reactome:R-HSA-9033530|Reactome:R-HSA-159773|Reactome:R-HSA-9686710|Reactome:R-HSA-400496|Reactome:R-HSA-158982|Reactome:R-HSA-1566962|Reactome:R-HSA-8852716|Reactome:R-HSA-173745|Reactome:R-HSA-1602458|Reactome:R-HSA-9655046|Reactome:R-HSA-1604359|Reactome:R-HSA-5210912|Reactome:R-HSA-381446|Reactome:R-HSA-1604368|Reactome:R-HSA-1604763|Reactome:R-HSA-3266557|Reactome:R-HSA-6800299|Reactome:R-HSA-8849857|Reactome:R-HSA-9666383|Reactome:R-HSA-9023633|Reactome:R-HSA-1592270|Reactome:R-HSA-141026|Reactome:R-HSA-1604752|Reactome:R-HSA-9694287|Reactome:R-HSA-2534160|Reactome:R-HSA-382061|Reactome:R-HSA-9662786 molecular_function owl:Class GO:0003094 biolink:NamedThing glomerular filtration The process in which plasma is filtered through the glomerular membrane which consists of capillary endothelial cells, the basement membrane, and epithelial cells. The glomerular filtrate is the same as plasma except it has no significant amount of protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007460 biolink:NamedThing R8 cell fate commitment The process in which the R8 photoreceptor commits to its cell fate. The R8 receptor contributes the central part of the rhabdomere in the basal parts of the ommatidium. tmpzr1t_l9r_go_relaxed.owl restriction of R8 fate GO:0007461 biological_process owl:Class GO:0045465 biolink:NamedThing R8 cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of the R8 photoreceptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048333 biolink:NamedThing mesodermal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a mesoderm cell. tmpzr1t_l9r_go_relaxed.owl mesoderm cell differentiation biological_process owl:Class GO:0033202 biolink:NamedThing DNA helicase complex A protein complex that possesses DNA helicase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900608 biolink:NamedThing tensidol B biosynthetic process The chemical reactions and pathways resulting in the formation of tensidol B. tmpzr1t_l9r_go_relaxed.owl tensidol B biosynthesis|tensidol B synthesis|tensidol B anabolism|tensidol B formation di 2012-05-15T06:58:51Z biological_process owl:Class GO:0046595 biolink:NamedThing establishment of pole plasm mRNA localization Any process that results in the directed movement of mRNA to the oocyte pole plasm. tmpzr1t_l9r_go_relaxed.owl establishment of oocyte pole plasm mRNA localization|establishment of pole plasm mRNA localisation GO:0048121 biological_process owl:Class GO:0003040 biolink:NamedThing excitation of vasomotor center by aortic body chemoreceptor signaling The process in which the molecular signal from an aortic body is relayed to the vasomotor center, causing it to signal an increase arterial pressure. tmpzr1t_l9r_go_relaxed.owl excitation of vasomotor center by aortic body chemoreceptor signalling biological_process owl:Class GO:0000028 biolink:NamedThing ribosomal small subunit assembly The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl 40S ribosomal subunit assembly|30S ribosomal subunit assembly biological_process owl:Class GO:0042274 biolink:NamedThing ribosomal small subunit biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. tmpzr1t_l9r_go_relaxed.owl ribosomal small subunit biogenesis and assembly biological_process owl:Class GO:0048342 biolink:NamedThing paraxial mesodermal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a paraxial mesoderm cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048341 biolink:NamedThing paraxial mesoderm formation The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904726 biolink:NamedThing regulation of replicative senescence Any process that modulates the frequency, rate or extent of replicative senescence. tmpzr1t_l9r_go_relaxed.owl rph 2015-10-14T13:11:24Z biological_process owl:Class GO:0002407 biolink:NamedThing dendritic cell chemotaxis The movement of a dendritic cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045685 biolink:NamedThing regulation of glial cell differentiation Any process that modulates the frequency, rate or extent of glia cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of neuroglia differentiation|regulation of glia cell differentiation biological_process owl:Class GO:1905493 biolink:NamedThing regulation of G-quadruplex DNA binding Any process that modulates the frequency, rate or extent of G-quadruplex DNA binding. tmpzr1t_l9r_go_relaxed.owl regulation of G-quartet DNA binding|regulation of G quartet binding|regulation of G quadruplex DNA binding|regulation of G-DNA binding|regulation of quadruplex DNA binding|regulation of G quartet DNA binding|regulation of tetraplex DNA binding|regulation of G-quartet binding ans 2016-09-26T14:53:21Z biological_process owl:Class GO:0051880 biolink:NamedThing G-quadruplex DNA binding Binding to G-quadruplex DNA structures, in which groups of four guanines adopt a flat, cyclic Hoogsteen hydrogen-bonding arrangement known as a guanine tetrad. The stacking of guanine tetrads results in G-quadruplex DNA structures. G-quadruplex DNA can form under physiological conditions from some G-rich sequences, such as those found in telomeres, immunoglobulin switch regions, gene promoters, fragile X repeats, and the dimerization domain in the human immunodeficiency virus (HIV) genome. tmpzr1t_l9r_go_relaxed.owl G-quartet DNA binding|G quartet DNA binding|G quadruplex DNA binding|quadruplex DNA binding|G quartet binding|G-DNA binding|G-quartet binding|tetraplex DNA binding molecular_function owl:Class GO:0051461 biolink:NamedThing positive regulation of corticotropin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of corticotropin hormone from a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of adrenocorticotropic hormone secretion|upregulation of adrenocorticotropin secretion|activation of adrenocorticotropin secretion|positive regulation of corticotropic hormone secretion|up-regulation of adrenocorticotropin secretion|stimulation of adrenocorticotropin secretion|positive regulation of adrenotropic hormone secretion|positive regulation of adrenocorticotropin secretion|up regulation of adrenocorticotropin secretion|positive regulation of adrenotropin secretion|positive regulation of ACTH secretion biological_process owl:Class GO:0051458 biolink:NamedThing corticotropin secretion The regulated release of corticotropin by a cell. Corticotropin hormone is a polypeptide hormone synthesized and secreted from corticotropes in the anterior lobe of the pituitary gland in response to corticotropin-releasing hormone (CRH) released by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl adrenotropin secretion|adrenotropic hormone secretion|ACTH secretion|adrenocorticotropic hormone secretion|corticotropic hormone secretion|adrenocorticotropin secretion biological_process owl:Class GO:0090026 biolink:NamedThing positive regulation of monocyte chemotaxis Any process that increases the frequency, rate, or extent of monocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:18:54Z biological_process owl:Class GO:0001997 biolink:NamedThing positive regulation of the force of heart contraction by epinephrine-norepinephrine Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart contraction by epinephrine-norepinephrine|positive regulation of heart contraction by adrenaline-noradrenaline|increased force of heart contraction by epinephrine-norepinephrine|increased force of heart contraction by adrenaline-noradrenaline|increased inotropy by epinephrine-norepinephrine|increased strength of cardiac contraction by epinephrine-norepinephrine biological_process owl:Class GO:0003321 biolink:NamedThing positive regulation of blood pressure by epinephrine-norepinephrine Any process in which the force of blood traveling through the circulatory system is increased by the chemicals epinephrine and norepinephrine. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-29T01:52:50Z biological_process owl:Class GO:0090708 biolink:NamedThing specification of plant organ axis polarity The process in which the polarity of a plant organ axis is specified. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-05T12:47:11Z biological_process owl:Class GO:0032335 biolink:NamedThing regulation of activin secretion Any process that modulates the frequency, rate or extent of the regulated release of activin from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902033 biolink:NamedThing regulation of hematopoietic stem cell proliferation Any process that modulates the frequency, rate or extent of hematopoietic stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of hemopoietic stem cell proliferation ss 2013-04-02T05:13:19Z biological_process owl:Class GO:0071425 biolink:NamedThing hematopoietic stem cell proliferation The expansion of a hematopoietic stem cell population by cell division. A hematopoietic stem cell is a stem cell from which all cells of the lymphoid and myeloid lineages develop. tmpzr1t_l9r_go_relaxed.owl hemopoietic stem cell proliferation mah 2009-12-16T10:22:52Z biological_process owl:Class GO:0001228 biolink:NamedThing DNA-binding transcription activator activity, RNA polymerase II-specific A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding|RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding|transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding|transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding|sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription|proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific|distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific|zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding|RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription|transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding|transcriptional activator activity, metal ion regulated sequence-specific DNA binding|RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription|transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding|RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription|metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding https://github.com/geneontology/go-ontology/issues/16131|https://github.com/geneontology/go-ontology/issues/16534|https://github.com/geneontology/go-ontology/issues/16152|https://github.com/geneontology/go-ontology/issues/20253 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. krc 2012-01-26T03:10:20Z GO:0001209|GO:0001212|GO:0001077|GO:0001205|GO:0001213|GO:0001211 molecular_function owl:Class GO:0086010 biolink:NamedThing membrane depolarization during action potential The process in which membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:15:05Z biological_process owl:Class GO:0072307 biolink:NamedThing regulation of metanephric nephron tubule epithelial cell differentiation Any process that modulates the frequency, rate or extent of metanephric nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0072257 biolink:NamedThing metanephric nephron tubule epithelial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the metanephric nephron tubule as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T04:11:02Z biological_process owl:Class GO:0048314 biolink:NamedThing embryo sac morphogenesis The process in which the anatomical structures of the embryo sac are generated and organized. The embryo sac develops from the megaspore in heterosporous plants. tmpzr1t_l9r_go_relaxed.owl female gametophyte morphogenesis biological_process owl:Class GO:0009561 biolink:NamedThing megagametogenesis The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. tmpzr1t_l9r_go_relaxed.owl megagametophyte nucleus division|embryo sac development from the megaspore Wikipedia:Megagametogenesis biological_process owl:Class GO:1902005 biolink:NamedThing regulation of proline biosynthetic process Any process that modulates the frequency, rate or extent of proline biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of proline biosynthesis|regulation of proline formation|regulation of proline synthesis|regulation of proline anabolism tb 2013-03-21T21:48:07Z biological_process owl:Class GO:0010984 biolink:NamedThing regulation of lipoprotein particle clearance Any process that modulates the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:05:12Z biological_process owl:Class GO:0007340 biolink:NamedThing acrosome reaction The discharge, by sperm, of a single, anterior secretory granule following the sperm's attachment to the zona pellucida of the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the exocytosis of the acrosomal contents into the zona pellucida. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Acrosome_reaction If the release of the acrosome content occurs before the sperm reaches the zona pellucida, consider using premature acrosome loss. biological_process owl:Class GO:0033083 biolink:NamedThing regulation of immature T cell proliferation Any process that modulates the frequency, rate or extent of immature T cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033079 biolink:NamedThing immature T cell proliferation The expansion of an immature T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061263 biolink:NamedThing mesonephric glomerular mesangial cell development The process whose specific outcome is the progression of a glomerular mesangial cell in the mesonephros over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:52:55Z biological_process owl:Class GO:0009832 biolink:NamedThing plant-type cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cell wall formation|cell wall assembly|cell wall anabolism|cell wall synthesis|cell wall biosynthetic process|cellulose and pectin-containing cell wall biogenesis biological_process owl:Class GO:0014905 biolink:NamedThing myoblast fusion involved in skeletal muscle regeneration A process in which non-proliferating myoblasts, after migrating to the site of injury, fuse into existing damaged fibers or fuse to myotubes to form new fibers, as part of the process of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034388 biolink:NamedThing Pwp2p-containing subcomplex of 90S preribosome A protein complex that forms a subcomplex of the 90S preribosome and can interact directly with the 5' External Transcribed Spacer (ETS) of the full length pre-rRNA transcript. In S. cerevisiae, it sediments at 25-30 S and is composed of Pwp2p, Dip2p, Utp21p, Utp13p, Utp18p, and Utp6p. tmpzr1t_l9r_go_relaxed.owl UTP-B complex|25-30 S subcomplex of 90S preribosome Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0044615 biolink:NamedThing nuclear pore nuclear basket A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component. tmpzr1t_l9r_go_relaxed.owl jl 2012-06-20T01:31:01Z cellular_component owl:Class GO:0005884 biolink:NamedThing actin filament A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl microfilament Wikipedia:Actin|NIF_Subcellular:sao1588493326|FMA:63850 cellular_component owl:Class GO:2001153 biolink:NamedThing positive regulation of renal water transport Any process that activates or increases the frequency, rate or extent of renal water transport. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-24T11:38:01Z biological_process owl:Class GO:2001167 biolink:NamedThing negative regulation of histone H2B ubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of histone H2B ubiquitination. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:49:56Z biological_process owl:Class GO:0033523 biolink:NamedThing histone H2B ubiquitination The modification of histone H2B by addition of ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046718 biolink:NamedThing viral entry into host cell The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl virion penetration into host cell|viral penetration|virus entry into host cell|phage translocation|entry of virus into host cell|virion penetration VZ:936 Viral attachment to the host cell is not part of viral entry in GO because virus attachment does not always lead to viral entry: attachment can also result in the virion being carried by the host cell to another location. GO:0019063 biological_process owl:Class GO:0060028 biolink:NamedThing convergent extension involved in axis elongation The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contributing to the lengthening of the axis of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000103 biolink:NamedThing sulfate assimilation The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. tmpzr1t_l9r_go_relaxed.owl sulphate assimilation|sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor|sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor GO:0019378 biological_process owl:Class GO:1904490 biolink:NamedThing negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of mitochondrial unfolded protein response. tmpzr1t_l9r_go_relaxed.owl negative regulation of mtUPR by downregulation of transcription from RNA polymerase II promoter|negative regulation of mtUPR by negative regulation of transcription from RNA polymerase II promoter, global|negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from Pol II promoter|negative regulation of mtUPR by negative regulation of global transcription from Pol II promoter|negative regulation of mtUPR by negative regulation of transcription from RNA polymerase II promoter|negative regulation of mtUPR by negative regulation of transcription from Pol II promoter|negative regulation of mtUPR by downregulation of global transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter, global|negative regulation of mitochondrial unfolded protein response by downregulation of transcription from RNA polymerase II promoter|negative regulation of mtUPR by down-regulation of transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by down regulation of global transcription from RNA polymerase II promoter|negative regulation of mtUPR by inhibition of transcription from RNA polymerase II promoter|negative regulation of mtUPR by down regulation of global transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by down regulation of transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by inhibition of global transcription from RNA polymerase II promoter|negative regulation of mtUPR by inhibition of global transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by down-regulation of transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of mtUPR by down regulation of transcription from RNA polymerase II promoter|negative regulation of mtUPR by down-regulation of global transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by negative regulation of global transcription from Pol II promoter|negative regulation of mitochondrial unfolded protein response by downregulation of global transcription from RNA polymerase II promoter|negative regulation of mtUPR by negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by inhibition of transcription from RNA polymerase II promoter|negative regulation of mitochondrial unfolded protein response by down-regulation of global transcription from RNA polymerase II promoter kmv 2015-07-17T18:15:13Z biological_process owl:Class GO:0034514 biolink:NamedThing mitochondrial unfolded protein response The series of molecular signals generated as a consequence of the presence of unfolded proteins in the mitochondrial matrix; results in transcriptional upregulation of nuclear genes encoding mitochondrial stress proteins. tmpzr1t_l9r_go_relaxed.owl mtUPR biological_process owl:Class GO:1903647 biolink:NamedThing negative regulation of chlorophyll catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of chlorophyll catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of chlorophyll catabolic process|inhibition of chlorophyll degradation|negative regulation of chlorophyll degradation|negative regulation of chlorophyll breakdown|down-regulation of chlorophyll catabolic process|inhibition of chlorophyll catabolism|downregulation of chlorophyll catabolism|downregulation of chlorophyll breakdown|down regulation of chlorophyll degradation|down-regulation of chlorophyll catabolism|inhibition of chlorophyll breakdown|downregulation of chlorophyll degradation|down regulation of chlorophyll catabolic process|down regulation of chlorophyll breakdown|negative regulation of chlorophyll catabolism|down-regulation of chlorophyll degradation|down-regulation of chlorophyll breakdown|inhibition of chlorophyll catabolic process|down regulation of chlorophyll catabolism tb 2014-11-22T00:18:25Z biological_process owl:Class GO:1990200 biolink:NamedThing SsuD-SsuE complex A protein complex containing an alkanesulfonate monooxygenase subunit (SsuD tetramer in E.coli) and a flavin oxidoreductase subunit (SsuE dimer in E.coli). Involved in the utilization of alkanesulfonates as sulfur sources under conditions of sulfate or cysteine starvation. tmpzr1t_l9r_go_relaxed.owl two-component alkanesulfonate monooxygenase system bhm 2013-10-03T12:59:26Z cellular_component owl:Class GO:0075268 biolink:NamedThing regulation of aecium development Any process that modulates the frequency, rate or extent of aecium development, a process in which a cuplike structure containing chains of aeciospores is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075267 biolink:NamedThing aecium development The process in which a cup-like structure containing chains of aeciospores is formed. This is characteristic of the rust fungus and typically, the first dikaryotic spores (aeciospores) are produced in the aecium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904479 biolink:NamedThing negative regulation of intestinal absorption Any process that stops, prevents or reduces the frequency, rate or extent of intestinal absorption. tmpzr1t_l9r_go_relaxed.owl down-regulation of intestinal absorption|down regulation of intestinal absorption|downregulation of intestinal absorption|inhibition of intestinal absorption rl 2015-07-13T15:58:54Z biological_process owl:Class GO:0050892 biolink:NamedThing intestinal absorption Any process in which nutrients are taken up from the contents of the intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045316 biolink:NamedThing negative regulation of compound eye photoreceptor development Any process that stops, prevents, or reduces the frequency, rate or extent of compound eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl inhibition of eye photoreceptor development|down regulation of eye photoreceptor development|downregulation of eye photoreceptor development|down-regulation of eye photoreceptor development|negative regulation of eye photoreceptor development biological_process owl:Class GO:0042051 biolink:NamedThing compound eye photoreceptor development The process whose specific outcome is the progression of a light-responsive receptor in the compound eye over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl adult eye photoreceptor development biological_process owl:Class GO:0030679 biolink:NamedThing cyanelle ribonuclease P complex A ribonuclease P complex located in the cyanelle, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. The best characterized cyanelle ribonuclease P complex, from the alga Cyanophora paradoxa, contains a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. tmpzr1t_l9r_go_relaxed.owl cyanelle RNase P complex cellular_component owl:Class GO:0009332 biolink:NamedThing glutamate-tRNA ligase complex An enzyme complex that catalyzes the ligation of glutamate and tRNA(Glu) to form glutamyl-tRNA(Glu). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060642 biolink:NamedThing white fat cell differentiation involved in mammary gland fat development The process in which a preadipocyte acquires specialized features of a white adipocyte of the mammary gland. White adipocytes have cytoplasmic lipids arranged in a unique vacuole. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-27T05:50:56Z biological_process owl:Class GO:0042318 biolink:NamedThing penicillin biosynthetic process The chemical reactions and pathways resulting in the formation of any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl penicillin biosynthesis|penicillin synthesis|penicillin anabolism|penicillin formation biological_process owl:Class GO:0097373 biolink:NamedThing MCM core complex A protein complex that contains Mcm4, Mcm6, and Mcm7 proteins, and possesses DNA helicase activity. In the heterohexameric MCM complex, the Mcm4/6/7 proteins form a stable core, and Mcm2, Mcm3, and Mcm5 are more peripherally associated. tmpzr1t_l9r_go_relaxed.owl MCM4/6/7 complex pr 2012-09-12T10:41:42Z cellular_component owl:Class GO:1904709 biolink:NamedThing negative regulation of granulosa cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of granulosa cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of granulosa cell of ovary apoptotic process|down regulation of granulosa cell of ovary apoptosis|inhibition of granulosa cell apoptotic process|inhibition of granulosa cell of ovary apoptosis|down-regulation of granulosa cell of ovary apoptotic process|down-regulation of granulosa cell apoptosis|downregulation of granulosa cell apoptosis|down-regulation of granulosa cell apoptotic process|downregulation of granulosa cell apoptotic process|down-regulation of granulosa cell of ovary apoptosis|down regulation of granulosa cell apoptosis|inhibition of granulosa cell of ovary apoptotic process|down regulation of granulosa cell of ovary apoptotic process|inhibition of granulosa cell apoptosis|downregulation of granulosa cell of ovary apoptosis|down regulation of granulosa cell apoptotic process|negative regulation of granulosa cell apoptosis|negative regulation of granulosa cell of ovary apoptosis|downregulation of granulosa cell of ovary apoptotic process sl 2015-10-01T16:09:45Z biological_process owl:Class GO:1905945 biolink:NamedThing regulation of response to calcium ion Any process that modulates the frequency, rate or extent of response to calcium ion. tmpzr1t_l9r_go_relaxed.owl regulation of response to Ca2+ ion bc 2017-02-13T10:56:34Z biological_process owl:Class GO:0051592 biolink:NamedThing response to calcium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to Ca2+ ion biological_process owl:Class GO:0070645 biolink:NamedThing Ubisch body A small, granular structure that is found in the extracellular matrix of cell of the secretory tapetal layer that surrounds developing pollen grains. Ubisch bodies have a sporopollenin coat, are attached to the peritapetal wall, and may play a role in pollen development. tmpzr1t_l9r_go_relaxed.owl orbicule mah 2009-05-11T11:35:33Z cellular_component owl:Class GO:0031012 biolink:NamedThing extracellular matrix A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. tmpzr1t_l9r_go_relaxed.owl matrisome|proteinaceous extracellular matrix NIF_Subcellular:nlx_subcell_20090513|Wikipedia:Extracellular_matrix GO:0005578 cellular_component owl:Class GO:0030888 biolink:NamedThing regulation of B cell proliferation Any process that modulates the frequency, rate or extent of B cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of B-cell proliferation|regulation of B lymphocyte proliferation|regulation of B-lymphocyte proliferation biological_process owl:Class GO:0005774 biolink:NamedThing vacuolar membrane The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000891 biolink:NamedThing cellobiose metabolic process The chemical reactions and pathways involving a cellobiose. tmpzr1t_l9r_go_relaxed.owl cellobiose metabolism jl 2011-07-28T01:35:35Z biological_process owl:Class GO:0099531 biolink:NamedThing presynaptic process involved in chemical synaptic transmission The pathway leading to secretion of a neurotransmitter from the presynapse as part of synaptic transmission. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001507 biolink:NamedThing acetylcholine catabolic process in synaptic cleft The chemical reactions and pathways resulting in the breakdown of acetylcholine that occurs in the synaptic cleft during synaptic transmission. tmpzr1t_l9r_go_relaxed.owl acetylcholine breakdown in synaptic cleft|acetylcholine degradation in synaptic cleft biological_process owl:Class GO:0043083 biolink:NamedThing synaptic cleft The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao243541954 cellular_component owl:Class GO:1904271 biolink:NamedThing L-proline import across plasma membrane The directed movement of L-proline from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-proline import into cell mah 2015-01-16T14:36:01Z GO:1903809 biological_process owl:Class GO:0060666 biolink:NamedThing dichotomous subdivision of terminal units involved in salivary gland branching The process in which a salivary epithelial cord bifurcates at its end. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-01T09:38:40Z biological_process owl:Class GO:0060445 biolink:NamedThing branching involved in salivary gland morphogenesis The process in which the branching structure of the salivary gland is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021823 biolink:NamedThing cerebral cortex tangential migration using cell-cell interactions The process in which neurons interact with each other to promote migration along a tangential plane. tmpzr1t_l9r_go_relaxed.owl chain migration biological_process owl:Class GO:1990096 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to superoxide Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion. tmpzr1t_l9r_go_relaxed.owl pr 2013-05-07T12:25:34Z biological_process owl:Class GO:0071451 biolink:NamedThing cellular response to superoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:39:14Z biological_process owl:Class GO:0097538 biolink:NamedThing ciliary necklace A protein complex located on the cilium membrane in the ciliary transition zone; it is connected to the cilium axoneme via Y-shaped links. tmpzr1t_l9r_go_relaxed.owl cilial necklace|cilium necklace pr 2013-12-03T16:43:41Z cellular_component owl:Class GO:1901291 biolink:NamedThing negative regulation of double-strand break repair via single-strand annealing Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair via single-strand annealing. tmpzr1t_l9r_go_relaxed.owl inhibition of double-strand break repair via single-strand annealing|down regulation of double-strand break repair via single-strand annealing|downregulation of double-strand break repair via single-strand annealing|down-regulation of double-strand break repair via single-strand annealing sart 2012-08-20T09:03:03Z biological_process owl:Class GO:0045002 biolink:NamedThing double-strand break repair via single-strand annealing Repair of a DSB made between two repeated sequences oriented in the same direction occurs primarily by the single strand annealing pathway. The ends of the break are processed by a 5' to 3' exonuclease, exposing complementary single-strand regions of the direct repeats that can anneal, resulting in a deletion of the unique DNA between the direct repeats. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903894 biolink:NamedThing regulation of IRE1-mediated unfolded protein response Any process that modulates the frequency, rate or extent of the IRE1-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl regulation of UPR signaling by IRE1 stress sensor|regulation of IRE1 signaling in response to endoplasmic reticulum stress|regulation of IRE1p unfolded protein response|regulation of IRE1 signal transduction pathway|regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|regulation of IRE1alpha unfolded protein response|regulation of ERN1-mediated unfolded protein response|regulation of IRE1 branch of UPR|regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction bf 2015-02-09T10:17:46Z biological_process owl:Class GO:0009999 biolink:NamedThing negative regulation of auditory receptor cell fate specification Any process that restricts, stops or prevents a cell from specifying into an auditory hair cell. tmpzr1t_l9r_go_relaxed.owl down regulation of auditory receptor cell fate specification|down-regulation of auditory receptor cell fate specification|downregulation of auditory receptor cell fate specification|inhibition of auditory receptor cell fate specification|suppression of hair cell fate|suppression of auditory receptor cell fate|negative regulation of auditory hair cell fate specification biological_process owl:Class GO:0042667 biolink:NamedThing auditory receptor cell fate specification The process in which a cell becomes capable of differentiating autonomously into an auditory hair cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl auditory hair cell fate specification biological_process owl:Class GO:0050788 biolink:NamedThing sequestering of mercury The process of binding or confining toxic mercury ions or atoms such that they are separated from sensitive components of a biological system. tmpzr1t_l9r_go_relaxed.owl mercury (Hg) ion sequestration|mercury (Hg2+) ion retention|sequestering of mercury (Hg) ion|mercuric ion (Hg2+) sequestering|mercury (Hg2+) ion storage|mercuric ion (Hg2+) sequestration|retention of mercury (Hg2+) ion|sequestering of mercuric ion (Hg2+)|sequestration of mercuric ion (Hg2+)|storage of mercury (Hg2+) ion|sequestration of mercury (Hg) ion|mercury (Hg) ion sequestering biological_process owl:Class GO:0050787 biolink:NamedThing detoxification of mercury ion Any process that reduce or remove the toxicity of mercuric ion. These include transport of mercury away from sensitive areas and to compartments or complexes whose purpose is sequestration of mercury ion and/or reduction of mercury ion (Hg[II]) to metallic mercury (Hg[0]). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045959 biolink:NamedThing negative regulation of complement activation, classical pathway Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the classical pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of complement activation, classical pathway|negative regulation of complement cascade, classical pathway|downregulation of complement activation, classical pathway|down-regulation of complement activation, classical pathway|down regulation of complement activation, classical pathway biological_process owl:Class GO:0006958 biolink:NamedThing complement activation, classical pathway Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes. tmpzr1t_l9r_go_relaxed.owl complement cascade, classical pathway biological_process owl:Class GO:1990918 biolink:NamedThing double-strand break repair involved in meiotic recombination The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix that contributes to reciprocal meiotic recombination. tmpzr1t_l9r_go_relaxed.owl al 2015-12-11T01:01:14Z biological_process owl:Class GO:1905673 biolink:NamedThing positive regulation of lysosome organization Any process that activates or increases the frequency, rate or extent of lysosome organization. tmpzr1t_l9r_go_relaxed.owl activation of lysosome organisation|up regulation of lysosome organization and biogenesis|upregulation of lysosome organization|positive regulation of lysosome organization and biogenesis|upregulation of lysosome organization and biogenesis|up-regulation of lysosome organization|activation of lysosome organization|positive regulation of lysosome organisation|up regulation of lysosome organization|up-regulation of lysosome organisation|up-regulation of lysosome organization and biogenesis|up regulation of lysosome organisation|activation of lysosome organization and biogenesis|upregulation of lysosome organisation sl 2016-11-11T22:01:20Z biological_process owl:Class GO:0035092 biolink:NamedThing sperm DNA condensation The progressive compaction of the spermatid chromatin so that it reaches a level of condensation that is not compatible with nuclear activities such as transcription or DNA replication. tmpzr1t_l9r_go_relaxed.owl sperm chromatin condensation biological_process owl:Class GO:0007289 biolink:NamedThing spermatid nucleus differentiation The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization. tmpzr1t_l9r_go_relaxed.owl spermatid nuclear differentiation See also the Cell Ontology term 'spermatid ; CL:0000018'. biological_process owl:Class GO:0048306 biolink:NamedThing calcium-dependent protein binding Binding to a protein or protein complex in the presence of calcium. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046619 biolink:NamedThing lens placode formation involved in camera-type eye formation Establishment and formation of the optic placode, paired ectodermal placodes that become invaginated to form the embryonic lens vesicles. tmpzr1t_l9r_go_relaxed.owl optic placode formation in camera-type eye|optic placode formation involved in camera-type eye formation|optic placode formation involved in camera-style eye biological_process owl:Class GO:1905435 biolink:NamedThing regulation of histone H3-K4 trimethylation Any process that modulates the frequency, rate or extent of histone H3-K4 trimethylation. tmpzr1t_l9r_go_relaxed.owl hbye 2016-09-14T13:08:55Z biological_process owl:Class GO:0080182 biolink:NamedThing histone H3-K4 trimethylation The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl dhl 2011-08-10T04:18:36Z biological_process owl:Class GO:0044726 biolink:NamedThing protection of DNA demethylation of female pronucleus The protection of the maternal genome from DNA demethylation in the zygote following fertilization. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-24T14:10:36Z biological_process owl:Class GO:0044725 biolink:NamedThing chromatin reprogramming in the zygote The global reprogramming of epigenetic modifications in the zygote following fertilization. The paternal genome undergoes active DNA demethylation before the first cell division, while the adjacent maternal genome is protected from this process. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-24T13:53:28Z biological_process owl:Class GO:0032381 biolink:NamedThing negative regulation of intracellular sterol transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of sterols within cells. tmpzr1t_l9r_go_relaxed.owl downregulation of intracellular sterol transport|down regulation of intracellular sterol transport|down-regulation of intracellular sterol transport|inhibition of intracellular sterol transport biological_process owl:Class GO:0032366 biolink:NamedThing intracellular sterol transport The directed movement of sterols within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010835 biolink:NamedThing regulation of protein ADP-ribosylation Any process that modulates the frequency, rate or extent of protein ADP-ribosylation. Protein ADP-ribosylation is the transfer, from NAD, of ADP-ribose to protein amino acids. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid ADP-ribosylation biological_process owl:Class GO:0034086 biolink:NamedThing maintenance of sister chromatid cohesion The process in which the association between sister chromatids of a replicated chromosome is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014724 biolink:NamedThing regulation of twitch skeletal muscle contraction Any process that modulates the frequency, rate or extent of twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014721 biolink:NamedThing twitch skeletal muscle contraction A process in which force is generated within twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The twitch skeletal muscle responds to neurostimulations with a contraction followed by a relaxation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075039 biolink:NamedThing establishment of turgor in appressorium The process in which hydrostatic pressure is increased within the symbiont appressorium to breach the cuticle of the host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl generation of turgor in appressorium|formation of turgor in appressorium|establishment of turgor in symbiont appressorium on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:1902457 biolink:NamedThing negative regulation of stomatal opening Any process that stops, prevents or reduces the frequency, rate or extent of stomatal opening. tmpzr1t_l9r_go_relaxed.owl down regulation of stomatal opening|inhibition of stomatal opening|downregulation of stomatal opening|down-regulation of stomatal opening tb 2013-10-16T22:25:22Z biological_process owl:Class GO:1990069 biolink:NamedThing stomatal opening The process of opening of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-27T21:18:48Z biological_process owl:Class GO:0061212 biolink:NamedThing mesonephric juxtaglomerular apparatus development The process whose specific outcome is the progression of the juxtaglomerular apparatus in the mesonephros over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:27:36Z biological_process owl:Class GO:0035340 biolink:NamedThing inosine transport The directed movement of the purine ribonucleoside inosine, also known as hypoxanthine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl hypoxanthine riboside transport bf 2010-03-04T10:00:58Z biological_process owl:Class GO:0036524 biolink:NamedThing protein deglycase activity Catalysis of the removal of a sugar or dicarbonyl from a lysine residue of a glycated protein. tmpzr1t_l9r_go_relaxed.owl protein deglycating enzyme MetaCyc:RXN-17632|MetaCyc:RXN-17634|MetaCyc:RXN-17630 bf 2016-08-04T10:23:33Z molecular_function owl:Class GO:0036525 biolink:NamedThing protein deglycation The removal of a sugar or dicarbonyl from a glycated protein. tmpzr1t_l9r_go_relaxed.owl glycated protein repair Glycation is a non enzymatic covalent addition of a sugar or dicarbonyl (methylglyoxal, glyoxal) to a protein. Deglycation repairs the glycated amino acids. bf 2016-08-04T10:28:54Z biological_process owl:Class GO:0045222 biolink:NamedThing CD4 biosynthetic process The chemical reactions and pathways resulting in the formation of CD4, a CD marker that occurs on T-helper cells and is involved in MHC class II restricted interactions. tmpzr1t_l9r_go_relaxed.owl CD4 formation|CD4 anabolism|CD4 synthesis|CD4 biosynthesis biological_process owl:Class GO:0048317 biolink:NamedThing seed morphogenesis The process in which the anatomical structures of the seed are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003248 biolink:NamedThing heart capillary growth The increase in heart capillaries that accompanies physiological hypertrophy of cardiac muscle. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:53:12Z biological_process owl:Class GO:0048394 biolink:NamedThing intermediate mesodermal cell fate determination The process in which a cell becomes capable of differentiating autonomously into a intermediate mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl intermediate mesoderm cell fate determination biological_process owl:Class GO:0048393 biolink:NamedThing intermediate mesodermal cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an intermediate mesoderm cell. tmpzr1t_l9r_go_relaxed.owl intermediate mesoderm cell fate commitment biological_process owl:Class GO:0044843 biolink:NamedThing cell cycle G1/S phase transition The cell cycle process by which a cell in G1 phase commits to S phase. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-25T16:33:47Z biological_process owl:Class GO:0010985 biolink:NamedThing negative regulation of lipoprotein particle clearance Any process that decreases the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:06:59Z biological_process owl:Class GO:0045945 biolink:NamedThing positive regulation of transcription by RNA polymerase III Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from Pol III promoter|upregulation of transcription from RNA polymerase III promoter|up-regulation of transcription from RNA polymerase III promoter|activation of transcription from RNA polymerase III promoter|stimulation of transcription from RNA polymerase III promoter|up regulation of transcription from RNA polymerase III promoter|positive regulation of transcription from RNA polymerase III promoter biological_process owl:Class GO:0006383 biolink:NamedThing transcription by RNA polymerase III The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. tmpzr1t_l9r_go_relaxed.owl transcription from RNA polymerase III type 3 promoter|transcription from Pol III promoter|transcription from a RNA polymerase III hybrid type promoter|transcription from RNA polymerase III promoter|U2 snRNA transcription (S. cerevisiae)|U6 snRNA transcription (mammalian)|transcription from RNA polymerase III type 2 promoter|RNA polymerase III transcription factor activity https://github.com/geneontology/go-ontology/issues/9617|https://github.com/geneontology/go-ontology/issues/14854 krc 2010-08-18T06:37:56Z GO:0001009|GO:0001041|GO:0001035 biological_process owl:Class GO:1990157 biolink:NamedThing DnaA-DnaB-DnaC complex A protein-DNA complex consisting of the helicase loading complex DnaB-DnaC bound to the DNA-bound DNA replication initiation protein DnaA. Essential for DNA replication initiation. tmpzr1t_l9r_go_relaxed.owl bhm 2013-08-02T11:42:27Z cellular_component owl:Class GO:1902174 biolink:NamedThing positive regulation of keratinocyte apoptotic process Any process that activates or increases the frequency, rate or extent of keratinocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of keratinocyte apoptotic process|up regulation of keratinocyte apoptosis|upregulation of keratinocyte apoptotic process|positive regulation of keratinocyte apoptosis|activation of keratinocyte apoptosis|up-regulation of keratinocyte apoptosis|up regulation of keratinocyte apoptotic process|activation of keratinocyte apoptotic process|upregulation of keratinocyte apoptosis rl 2013-05-29T14:36:21Z biological_process owl:Class GO:0097283 biolink:NamedThing keratinocyte apoptotic process Any apoptotic process in a keratinocyte. A keratinocyte is an epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. tmpzr1t_l9r_go_relaxed.owl keratinocyte apoptosis pr 2012-03-29T10:20:51Z biological_process owl:Class GO:0014720 biolink:NamedThing tonic skeletal muscle contraction A process in which force is generated within tonic skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The tonic skeletal muscle is characterized by long lasting contractile responses and high resistance to fatigue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060755 biolink:NamedThing negative regulation of mast cell chemotaxis Any process that decreases the rate, frequency or extent of mast cell chemotaxis. Mast cell chemotaxis is the movement of a mast cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:40:58Z biological_process owl:Class GO:0032473 biolink:NamedThing cytoplasmic side of mitochondrial outer membrane The external (cytoplasmic) face of the mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl external side of mitochondrial outer membrane|external leaflet of mitochondrial outer membrane|external side of mitochondrial envelope|cytosolic side of mitochondrial outer membrane In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane. cellular_component owl:Class GO:1902530 biolink:NamedThing positive regulation of protein linear polyubiquitination Any process that activates or increases the frequency, rate or extent of protein linear polyubiquitination. tmpzr1t_l9r_go_relaxed.owl up regulation of M1 linkage|upregulation of protein linear polyubiquitination|up regulation of protein linear polyubiquitination|activation of protein linear polyubiquitination|positive regulation of M1 linkage|up-regulation of M1 linkage|up-regulation of protein linear polyubiquitination|activation of M1 linkage|upregulation of M1 linkage An example is BIRC2 (UniProt ID Q13490) in PMID:21931591. ppm 2013-12-02T10:03:18Z biological_process owl:Class GO:0097039 biolink:NamedThing protein linear polyubiquitination A protein ubiquitination process in which a linear polymer of ubiquitin, formed by the amino-terminal methionine (M1) of one ubiquitin molecule and by the carboxy-terminal glycine (G76) of the next, is added to a protein. tmpzr1t_l9r_go_relaxed.owl M1 linkage pr 2011-04-13T01:52:51Z biological_process owl:Class GO:2000114 biolink:NamedThing regulation of establishment of cell polarity Any process that modulates the frequency, rate or extent of establishment of cell polarity. tmpzr1t_l9r_go_relaxed.owl regulation of cell polarization|regulation of bud site selection/establishment of cell polarity dph 2010-09-16T01:22:36Z biological_process owl:Class GO:0071711 biolink:NamedThing basement membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane. tmpzr1t_l9r_go_relaxed.owl basement membrane organisation Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer. mah 2010-03-10T11:57:10Z biological_process owl:Class GO:1905444 biolink:NamedThing negative regulation of clathrin coat assembly Any process that stops, prevents or reduces the frequency, rate or extent of clathrin coat assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of clathrin cage assembly|down regulation of clathrin coat assembly|down-regulation of clathrin coat assembly|downregulation of clathrin cage assembly|inhibition of clathrin coat assembly|inhibition of clathrin cage assembly|down regulation of clathrin cage assembly|down-regulation of clathrin cage assembly|downregulation of clathrin coat assembly bf 2016-09-15T14:38:30Z biological_process owl:Class GO:0048268 biolink:NamedThing clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. tmpzr1t_l9r_go_relaxed.owl clathrin cage assembly biological_process owl:Class GO:1905847 biolink:NamedThing negative regulation of cellular response to oxidopamine Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to oxidopamine. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular response to oxidopamine|inhibition of cellular response to oxidopamine|down-regulation of cellular response to oxidopamine|downregulation of cellular response to oxidopamine rz 2017-01-19T10:46:55Z biological_process owl:Class GO:1905842 biolink:NamedThing cellular response to oxidopamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidopamine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2017-01-19T09:49:12Z biological_process owl:Class GO:0001738 biolink:NamedThing morphogenesis of a polarized epithelium The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. tmpzr1t_l9r_go_relaxed.owl epithelial polarization biological_process owl:Class GO:1990621 biolink:NamedThing ESCRT IV complex An ESCRT complex that has AAA-ATPase activity and is involved in ESCRT-mediated intralumenal vesicle formation and the final stages of cytokinesis. The complex catalyzes disassembly of the ESCRT III filament around the neck of the budding vesicle in an ATP-driven reaction, resulting in membrane scission and recycling of the ESCRT III components back to the cytosol. In yeast, it is formed by the AAA ATPase Vps4 and its cofactor Vta1. tmpzr1t_l9r_go_relaxed.owl VPS4A/B complex|Vps4 complex|VPS4A-VPS4B|ESCRT-IV|Vta1-Vps4 complex|Vps4-Vta1 complex|vacuolar protein sorting-associated complex pr 2015-01-29T10:02:30Z cellular_component owl:Class GO:0044298 biolink:NamedThing cell body membrane The plasma membrane of a cell that bears surface projections such as axons, dendrites, cilia, or flagella, excluding the plasma membrane on cell projections. tmpzr1t_l9r_go_relaxed.owl cell soma membrane jl 2010-02-05T10:39:23Z cellular_component owl:Class GO:0044297 biolink:NamedThing cell body The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections. tmpzr1t_l9r_go_relaxed.owl cell soma FBbt:00005107|Wikipedia:Cell_body|FMA:67301 Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. jl 2010-02-05T10:37:16Z cellular_component owl:Class GO:1902864 biolink:NamedThing negative regulation of embryonic camera-type eye development Any process that stops, prevents or reduces the frequency, rate or extent of embryonic camera-type eye development. tmpzr1t_l9r_go_relaxed.owl down-regulation of embryonic camera-type eye development|down regulation of embryonic eye development|down regulation of embryonic camera-type eye development|down-regulation of embryonic eye development|inhibition of embryonic eye development|inhibition of embryonic camera-type eye development|downregulation of embryonic camera-type eye development|downregulation of embryonic eye development|negative regulation of embryonic eye development mr 2014-04-03T15:24:06Z biological_process owl:Class GO:0031076 biolink:NamedThing embryonic camera-type eye development The process occurring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl embryonic eye development biological_process owl:Class GO:1990521 biolink:NamedThing m7G(5')pppN diphosphatase activator activity Binds to and increases the activity of m7G(5')pppN diphosphatase. tmpzr1t_l9r_go_relaxed.owl vw 2014-10-23T11:20:56Z molecular_function owl:Class GO:0061233 biolink:NamedThing mesonephric glomerular basement membrane development The process whose specific outcome is the progression of the mesonephric glomerular basement membrane over time, from its formation to the mature structure. The mesonephric glomerular basement membrane is the basal laminal portion of the mesonephric glomerulus which performs the actual filtration. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:52:18Z biological_process owl:Class GO:0106012 biolink:NamedThing positive regulation of protein localization to medial cortex Any process that activates or increases the frequency, rate or extent of protein localization to the medial cortex. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-27T17:36:17Z biological_process owl:Class GO:0071574 biolink:NamedThing protein localization to medial cortex A process in which a protein is transported to, or maintained in, the medial cortex. tmpzr1t_l9r_go_relaxed.owl protein localisation to medial cortex mah 2010-01-26T05:17:50Z biological_process owl:Class GO:0061549 biolink:NamedThing sympathetic ganglion development The process whose specific outcome is the progression of a sympathetic ganglion over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl sympathetic ganglia development dph 2013-07-10T08:38:01Z biological_process owl:Class GO:0036411 biolink:NamedThing H-NS-Cnu complex A trimeric protein complex containing a H-NS homodimer and a Cnu monomer. In bacteria, this complex negatively regulates transcription of a range of genes. tmpzr1t_l9r_go_relaxed.owl bf 2013-08-22T10:19:24Z cellular_component owl:Class GO:1990121 biolink:NamedThing H-NS complex A multimer of H-NS proteins that is involved in bacterial nucleoid condensation and negative regulation of global gene expression by directly binding to promoter regions. Recognizes both structural and sequence-specific motifs in double-stranded DNA and has binding preference for bent DNA. tmpzr1t_l9r_go_relaxed.owl histone-like protein H-NS complex|DNA-binding protein H-NS complex bhm 2013-06-12T10:08:31Z cellular_component owl:Class GO:0010442 biolink:NamedThing guard cell morphogenesis Generation and organization of the polarized cell that is capable of turgor driven movement. tmpzr1t_l9r_go_relaxed.owl guard cell morphogenesis during differentiation biological_process owl:Class GO:0010441 biolink:NamedThing guard cell development The process whose specific outcome is the progression of the guard cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015663 biolink:NamedThing nicotinamide mononucleotide transmembrane transporter activity Enables the directed movement of nicotinamide mononucleotide into, out of or within a cell, or between cells. Nicotinamide mononucleotide is a ribonucleotide in which the nitrogenous base, nicotinamide, is in beta-n-glycosidic linkage with the c-1 position of d-ribose. It is a constituent of NAD and NADP. tmpzr1t_l9r_go_relaxed.owl nicotinamide mononucleotide permease activity|nicotinamide ribonucleotide transmembrane transporter activity GO:0015664 molecular_function owl:Class GO:0060535 biolink:NamedThing trachea cartilage morphogenesis The process in which the anatomical structures of cartilage in the trachea are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T09:07:48Z biological_process owl:Class GO:0060534 biolink:NamedThing trachea cartilage development The process whose specific outcome is the progression of the tracheal cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T09:00:18Z biological_process owl:Class GO:0071017 biolink:NamedThing U12-type catalytic step 1 spliceosome A spliceosomal complex that is formed by the displacement of the U11 and U4atac snRNPs from the precatalytic spliceosome; the U12, U5 and U6atac snRNPs remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the U12, and U5 and U6atac snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian U12-type spliceosomal complex B*|U12-type activated spliceosome|minor catalytic step 1 spliceosome|AT-AC catalytic step 1 spliceosome|yeast U12-type spliceosomal complex A1|mammalian U12-type spliceosomal complex B2 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005693 biolink:NamedThing U12 snRNP A ribonucleoprotein complex that contains small nuclear RNA U12, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U12 snRNP, most of which remain associated with the U12 snRNA both while the U12 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U12 cellular_component owl:Class GO:0097105 biolink:NamedThing presynaptic membrane assembly The aggregation, arrangement and bonding together of a set of components to form a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction. tmpzr1t_l9r_go_relaxed.owl pre-synaptic membrane assembly Note that 'presynaptic membrane' in this term should not be mistaken with 'presynaptic active zone'. The latter encompasses more than the former, as it also includes the specialized cortical cytoskeletal matrix in the cell cortex of a presynaptic neuron. pr 2011-07-27T01:30:45Z biological_process owl:Class GO:0099617 biolink:NamedThing matrix side of mitochondrial inner membrane The side (leaflet) of the mitochondrial inner membrane that faces the matrix. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120265 biolink:NamedThing negative regulation of chromosome attachment to the nuclear envelope Any process that stops, prevents, or reduces the frequency, rate or extent of the chromosome attachment to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl down-regulation of chromosome attachment to the nuclear envelope|downregulation of chromosome attachment to the nuclear envelope|inhibition of chromosome attachment to the nuclear envelope|down regulation of chromosome attachment to the nuclear envelope https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:30:32Z biological_process owl:Class GO:0097240 biolink:NamedThing chromosome attachment to the nuclear envelope The process in which chromatin is anchored to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl attachment of chromatin to nuclear envelope pr 2012-02-07T01:11:37Z biological_process owl:Class GO:0033622 biolink:NamedThing integrin activation The aggregation, arrangement and bonding together of an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits, that lead to the increased affinity of the integrin for its extracellular ligands. tmpzr1t_l9r_go_relaxed.owl integrin complex activation|integrin complex assembly biological_process owl:Class GO:0052705 biolink:NamedThing methylhistidine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + N-alpha-methyl-L-histidine = S-adenosyl-L-homocysteine + N-alpha,N-alpha-dimethyl-L-histidine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:N-alpha-dimethyl-L-histidine N-alpha-methyltransferase activity|histidine-alpha-N-methyltransferase activity|methylhistidine methyltransferase activity|S-adenosyl-L-methionine:alpha-N-dimethyl-L-histidine alpha-N-methyltransferase activity ai 2011-08-05T11:54:54Z molecular_function owl:Class GO:1903914 biolink:NamedThing negative regulation of fusion of virus membrane with host plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of fusion of virus membrane with host plasma membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of viral penetration via membrane fusion|down regulation of viral entry into host cell via membrane fusion with the plasma membrane|downregulation of viral envelope fusion with host cell membrane|downregulation of viral entry into host cell via membrane fusion with the plasma membrane|down regulation of viral penetration via membrane fusion|downregulation of viral envelope fusion with host plasma membrane|down-regulation of viral-cell fusion molecule activity|downregulation of fusion of virus membrane with host plasma membrane|down regulation of viral-cell fusion molecule activity|down-regulation of viral envelope fusion with host plasma membrane|negative regulation of viral entry into host cell via membrane fusion with the plasma membrane|negative regulation of viral-cell fusion molecule activity|inhibition of fusion of virus membrane with host plasma membrane|negative regulation of viral penetration via membrane fusion|negative regulation of viral envelope fusion with host plasma membrane|inhibition of viral envelope fusion with host cell membrane|down-regulation of viral envelope fusion with host membrane|down-regulation of viral entry into host cell via membrane fusion with the plasma membrane|inhibition of viral entry into host cell via membrane fusion with the plasma membrane|downregulation of viral penetration via membrane fusion|inhibition of viral envelope fusion with host plasma membrane|down regulation of viral envelope fusion with host membrane|negative regulation of viral envelope fusion with host cell membrane|downregulation of viral envelope fusion with host membrane|down regulation of viral envelope fusion with host plasma membrane|down-regulation of fusion of virus membrane with host plasma membrane|down-regulation of viral envelope fusion with host cell membrane|negative regulation of viral envelope fusion with host membrane|down regulation of viral envelope fusion with host cell membrane|downregulation of viral-cell fusion molecule activity|down regulation of fusion of virus membrane with host plasma membrane|down-regulation of viral penetration via membrane fusion|inhibition of viral envelope fusion with host membrane|inhibition of viral-cell fusion molecule activity als 2015-02-09T11:13:32Z biological_process owl:Class GO:0044379 biolink:NamedThing protein localization to actin cortical patch A process in which a protein is transported to, or maintained in, an actin cortical patch. tmpzr1t_l9r_go_relaxed.owl protein localisation to actin cortical patch jl 2011-12-08T02:28:42Z biological_process owl:Class GO:0005078 biolink:NamedThing MAP-kinase scaffold activity The binding activity of a molecule that functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. Binds multiple kinases of the MAPKKK cascade, and also upstream signaling proteins, permitting those molecules to function in a coordinated way. Bringing together multiple enzymes and their substrates enables the signal to be transduced quickly and efficiently. tmpzr1t_l9r_go_relaxed.owl MAP-kinase scaffold protein activity molecular_function owl:Class GO:0051019 biolink:NamedThing mitogen-activated protein kinase binding Binding to a mitogen-activated protein kinase. tmpzr1t_l9r_go_relaxed.owl MAPK binding|MAP kinase binding|MAP-kinase anchoring activity molecular_function owl:Class GO:0140628 biolink:NamedThing outward rectifier potassium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of an outwardly rectifying potassium channel. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21157 pg 2021-03-24T07:58:39Z molecular_function owl:Class GO:0015271 biolink:NamedThing outward rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by an outwardly-rectifying voltage-gated channel. An outwardly rectifying current-voltage relation is one where at any given driving force the outward flow of K+ ions exceeds the inward flow for the opposite driving force. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004807 biolink:NamedThing triose-phosphate isomerase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl phosphotriose isomerase activity|triosephosphate isomerase activity|triose phosphoisomerase activity|D-glyceraldehyde-3-phosphate aldose-ketose-isomerase activity|D-glyceraldehyde-3-phosphate ketol-isomerase activity|triose phosphate mutase activity|triosephosphate mutase activity Reactome:R-HSA-70481|MetaCyc:TRIOSEPISOMERIZATION-RXN|Reactome:R-HSA-70454|RHEA:18585|KEGG_REACTION:R01015|EC:5.3.1.1 molecular_function owl:Class GO:0033368 biolink:NamedThing protease localization to mast cell secretory granule Any process in which a protease is transported to, or maintained in, a location within a secretory granule in a mast cell. tmpzr1t_l9r_go_relaxed.owl protease localisation in mast cell secretory granule|protease localization in mast cell secretory granule biological_process owl:Class GO:0005290 biolink:NamedThing L-histidine transmembrane transporter activity Enables the transfer of L-histidine from one side of a membrane to the other. L-histidine is 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine/arginine/lysine/ornithine porter activity|L-histidine transporter activity molecular_function owl:Class GO:0014014 biolink:NamedThing negative regulation of gliogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of gliogenesis, the formation of mature glia. tmpzr1t_l9r_go_relaxed.owl inhibition of gliogenesis|downregulation of gliogenesis|down-regulation of gliogenesis|down regulation of gliogenesis biological_process owl:Class GO:1902424 biolink:NamedThing negative regulation of attachment of mitotic spindle microtubules to kinetochore Any process that stops, prevents or reduces the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation. tmpzr1t_l9r_go_relaxed.owl down-regulation of attachment of spindle microtubules to kinetochore during mitosis|inhibition of attachment of spindle microtubules to kinetochore involved in mitosis|inhibition of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|down-regulation of attachment of spindle microtubules to mitotic chromosome|downregulation of attachment of spindle microtubules to mitotic chromosome|down regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|negative regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|negative regulation of mitotic attachment of spindle microtubules to kinetochore|negative regulation of attachment of spindle microtubules to kinetochore involved in mitosis|down-regulation of attachment of spindle microtubules to kinetochore involved in mitosis|negative regulation of mitotic bipolar attachment|negative regulation of attachment of spindle microtubules to kinetochore during mitosis|down-regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|down-regulation of mitotic bipolar attachment|inhibition of attachment of spindle microtubules to kinetochore during mitosis|downregulation of mitotic bipolar attachment|down regulation of attachment of spindle microtubules to kinetochore during mitosis|inhibition of mitotic bipolar attachment|inhibition of attachment of spindle microtubules to mitotic chromosome|down regulation of attachment of spindle microtubules to kinetochore involved in mitosis|down regulation of attachment of spindle microtubules to mitotic chromosome|downregulation of attachment of spindle microtubules to kinetochore involved in mitosis|negative regulation of attachment of spindle microtubules to mitotic chromosome|down regulation of mitotic bipolar attachment|downregulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|downregulation of attachment of spindle microtubules to kinetochore during mitosis vw 2013-09-19T10:33:46Z biological_process owl:Class GO:0090309 biolink:NamedThing positive regulation of DNA methylation-dependent heterochromatin assembly Any process that increases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of methylation-dependent chromatin silencing tb 2010-04-09T02:12:53Z biological_process owl:Class GO:0000809 biolink:NamedThing cytoplasmic origin of replication recognition complex A multisubunit complex that is located at the replication origins of a chromosome in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl prokaryotic ORC|cytoplasmic ORC cellular_component owl:Class GO:0001680 biolink:NamedThing tRNA 3'-terminal CCA addition Post-transcriptional addition of the terminal 3' CCA sequence to a tRNA which does not encode this sequence within the primary transcript. CCA addition proceeds by the sequential addition of CTP, CTP, and then ATP to the 3' end of the tRNA, yielding a diphosphate with each nucleotide addition. tmpzr1t_l9r_go_relaxed.owl -C-C-A pyrophosphorylase activity|transfer ribonucleate adenylyltransferase activity|transfer ribonucleic adenylyl (cytidylyl) transferase activity|transfer RNA adenylyltransferase activity|ribonucleic cytidylyltransferase activity|CTP(ATP):tRNA nucleotidyltransferase activity|tRNA cytidylyltransferase activity|ATP(CTP)-tRNA nucleotidyltransferase activity|CCA-adding enzyme, tRNA adenylyltransferase, tRNA cytidylyltransferase, tRNA CCA-pyrophosphorylase activity|tRNA CCA-diphosphorylase activity|CCA-adding enzyme activity|tRNA-nucleotidyltransferase activity|tRNA adenylyl(cytidylyl)transferase activity|ribonucleic cytidylic cytidylic adenylic pyrophosphorylase activity|CCA tRNA nucleotidyltransferase activity|CTP:tRNA cytidylyltransferase activity|transfer-RNA nucleotidyltransferase activity|transfer ribonucleate adenyltransferase activity|transfer ribonucleic-terminal trinucleotide nucleotidyltransferase activity|transfer ribonucleate cytidylyltransferase activity|transfer ribonucleic acid nucleotidyl transferase activity|ATP(CTP):tRNA nucleotidyltransferase activity|transfer ribonucleate nucleotidyltransferase activity KEGG_REACTION:R09382|MetaCyc:TRNA-CYTIDYLYLTRANSFERASE-RXN biological_process owl:Class GO:0052929 biolink:NamedThing ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity Catalysis of the reaction: a tRNA with a 3' CC end + ATP = a tRNA with a 3' CCA end + diphosphate. tmpzr1t_l9r_go_relaxed.owl ATP:3'-CC-tRNA adenylyltransferase activity|ATP:tRNA adenylyltransferase activity RHEA:60012|KEGG_REACTION:R09386|EC:2.7.7.72 molecular_function owl:Class GO:0110163 biolink:NamedThing negative regulation of mitotic spindle elongation (spindle phase three) Any process that stops, prevents or reduces the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase three). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:29:43Z biological_process owl:Class GO:0048593 biolink:NamedThing camera-type eye morphogenesis The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field. tmpzr1t_l9r_go_relaxed.owl camera-style eye morphogenesis GO:0048595|GO:0048594 biological_process owl:Class GO:0043010 biolink:NamedThing camera-type eye development The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field. tmpzr1t_l9r_go_relaxed.owl GO:0031075|GO:0001747 biological_process owl:Class GO:0046905 biolink:NamedThing 15-cis-phytoene synthase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate -> 15-cis-phytoene + 2 diphosphate. tmpzr1t_l9r_go_relaxed.owl phytoene synthase activity https://github.com/geneontology/go-ontology/issues/21165 RHEA:34479 Note that this should not be confused with 'geranylgeranyl-diphosphate geranylgeranyltransferase activity ; GO:0016767', EC:2.5.1.32. This activity is the second part of the formation of phytoene from geranylgeranyl-diphosphate, the first stage of which is catalyzed by EC:2.5.1.32. molecular_function owl:Class GO:0097400 biolink:NamedThing interleukin-17-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-17 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-17-mediated signalling pathway|interleukin-17-mediated signalling pathway|IL-17-mediated signaling pathway pr 2012-10-23T13:30:03Z biological_process owl:Class GO:0008705 biolink:NamedThing methionine synthase activity Catalysis of the reaction: (6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine. tmpzr1t_l9r_go_relaxed.owl tetrahydrofolate methyltransferase activity|5-methyltetrahydrofolate--homocysteine transmethylase activity|B12 N(5)-methyltetrahydrofolate homocysteine methyltransferase activity|B12 N5-methyltetrahydrofolate homocysteine methyltransferase activity|methionine synthase (cobalamin-dependent) activity|N5-methyltetrahydrofolic-homocysteine vitamin B12 transmethylase activity|vitamin B12 methyltransferase activity|N5-methyltetrahydrofolate-homocysteine cobalamin methyltransferase activity|MetH|tetrahydropteroylglutamic methyltransferase activity|N(5)-methyltetrahydrofolic--homocysteine vitamin B12 transmethylase activity|N(5)-methyltetrahydrofolate--homocysteine cobalamin methyltransferase activity|tetrahydropteroylglutamate methyltransferase activity|5-methyltetrahydrofolate-homocysteine S-methyltransferase activity|N5-methyltetrahydrofolate methyltransferase activity|N(5)-methyltetrahydrofolate methyltransferase activity|methyltetrahydrofolate--homocysteine vitamin B12 methyltransferase activity|5-methyltetrahydrofolate:L-homocysteine S-methyltransferase activity|5-methyltetrahydrofolate--homocysteine S-methyltransferase activity|cobalamin-dependent methionine synthase activity|N-methyltetrahydrofolate:L-homocysteine methyltransferase activity Reactome:R-HSA-3149539|KEGG_REACTION:R00946|RHEA:11172|Reactome:R-HSA-174374|EC:2.1.1.13|MetaCyc:HOMOCYSMETB12-RXN molecular_function owl:Class GO:0009086 biolink:NamedThing methionine biosynthetic process The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl methionine synthesis|methionine biosynthesis|methionine formation|methionine anabolism biological_process owl:Class GO:0032952 biolink:NamedThing regulation of (1->3)-beta-D-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of (1->3)-beta-D-glucan metabolism|regulation of 1,3-beta-glucan metabolic process|regulation of 1,3-beta-D-glucan metabolic process|regulation of 1,3-beta-glucan metabolism biological_process owl:Class GO:0006074 biolink:NamedThing (1->3)-beta-D-glucan metabolic process The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-glucan metabolism|1,3-beta-glucan metabolic process|beta-1,3 glucan metabolism|1,3-beta-D-glucan metabolic process|beta-1,3 glucan metabolic process biological_process owl:Class GO:1903516 biolink:NamedThing regulation of single strand break repair Any process that modulates the frequency, rate or extent of single strand break repair. tmpzr1t_l9r_go_relaxed.owl rl 2014-10-06T10:58:52Z biological_process owl:Class GO:0000012 biolink:NamedThing single strand break repair The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905949 biolink:NamedThing negative regulation of calcium ion import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion import across plasma membrane|down regulation of calcium ion import across plasma membrane|downregulation of calcium ion import across plasma membrane|inhibition of calcium ion import across plasma membrane An example of this is PPP3CA in human (Q08209) in PMID:17640527 (inferred from direct assay). bhm 2017-02-17T09:42:30Z biological_process owl:Class GO:0098703 biolink:NamedThing calcium ion import across plasma membrane The directed movement of calcium ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl calcium ion import into cell|calcium ion uptake into cell mah 2013-02-07T13:07:59Z GO:1990035 biological_process owl:Class GO:0034774 biolink:NamedThing secretory granule lumen The volume enclosed by the membrane of a secretory granule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051209 biolink:NamedThing release of sequestered calcium ion into cytosol The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the cytosolic compartment. tmpzr1t_l9r_go_relaxed.owl cytosolic release of sequestered calcium ion (Ca2+)|cytoplasmic release of sequestered calcium ion (Ca2+)|release of sequestered calcium ion into cytoplasm|calcium ion (Ca2+) mobilization|cytoplasmic release of stored calcium ion (Ca2+)|release of stored calcium ion (Ca2+) into cytoplasm|cytosolic release of stored calcium ion (Ca2+)|release of stored calcium ion (Ca2+)|release of stored calcium ion (Ca2+) into cytosol|calcium mobilization|release of sequestered calcium ion (Ca2+) biological_process owl:Class GO:0032656 biolink:NamedThing regulation of interleukin-13 production Any process that modulates the frequency, rate, or extent of interleukin-13 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-13 secretion|regulation of IL-13 production|regulation of interleukin-13 biosynthetic process GO:2000665|GO:0045366 biological_process owl:Class GO:0040018 biolink:NamedThing positive regulation of multicellular organism growth Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size. tmpzr1t_l9r_go_relaxed.owl positive regulation of body size|positive regulation of body growth biological_process owl:Class GO:0035264 biolink:NamedThing multicellular organism growth The increase in size or mass of an entire multicellular organism, as opposed to cell growth. tmpzr1t_l9r_go_relaxed.owl body growth biological_process owl:Class GO:0044870 biolink:NamedThing modulation by host of viral glycoprotein metabolic process A process in which a host organism modulates the frequency, rate or extent of viral glycoprotein metabolic process. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T14:26:19Z biological_process owl:Class GO:2000082 biolink:NamedThing regulation of L-ascorbic acid biosynthetic process Any process that modulates the frequency, rate or extent of L-ascorbic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of vitamin C biosynthesis|regulation of L-ascorbic acid anabolism|regulation of vitamin C biosynthetic process|regulation of ascorbate biosynthetic process|regulation of ascorbate biosynthesis|regulation of L-ascorbic acid biosynthesis|regulation of L-ascorbic acid synthesis|regulation of L-ascorbic acid formation tb 2010-08-27T11:26:16Z biological_process owl:Class GO:0019853 biolink:NamedThing L-ascorbic acid biosynthetic process The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. tmpzr1t_l9r_go_relaxed.owl L-ascorbic acid anabolism|L-ascorbic acid formation|ascorbate biosynthesis|L-ascorbic acid synthesis|vitamin C biosynthesis|L-ascorbic acid biosynthesis|vitamin C biosynthetic process|ascorbate biosynthetic process MetaCyc:PWY-882 biological_process owl:Class GO:0006368 biolink:NamedThing transcription elongation from RNA polymerase II promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA elongation from Pol II promoter|RNA polymerase II transcription elongation factor activity biological_process owl:Class GO:0032750 biolink:NamedThing positive regulation of interleukin-26 production Any process that activates or increases the frequency, rate, or extent of interleukin-26 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-26 production|up-regulation of interleukin-26 production|up regulation of interleukin-26 production|stimulation of interleukin-26 production|upregulation of interleukin-26 production|positive regulation of interleukin-26 biosynthetic process|activation of interleukin-26 production GO:0045538 biological_process owl:Class GO:0032630 biolink:NamedThing interleukin-26 production The appearance of interleukin-26 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl AK155 secretion|interleukin-26 biosynthesis|interleukin-26 formation|interleukin-26 anabolism|interleukin-26 biosynthetic process|interleukin-26 secretion|IL-26 production|interleukin-26 synthesis GO:0045526|GO:0072624 biological_process owl:Class GO:0034492 biolink:NamedThing hydrogenosome lumen The volume enclosed by the hydrogenosome membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042566 biolink:NamedThing hydrogenosome A spherical, membrane-bounded organelle found in some anaerobic protozoa, which participates in ATP and molecular hydrogen formation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Hydrogenosome cellular_component owl:Class GO:0075035 biolink:NamedThing appressorium maturation The process in which specialized features of the symbiont appressorium are acquired post initiation, to aid in infection of the host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl maturation of appressorium on or near host|appressorium maturation on or near host|maturation of symbiont appressorium on or near host biological_process owl:Class GO:0009099 biolink:NamedThing valine biosynthetic process The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl valine formation|valine anabolism|valine biosynthesis|valine synthesis MetaCyc:VALSYN-PWY biological_process owl:Class GO:0052655 biolink:NamedThing L-valine transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoic acid + L-glutamatic acid. tmpzr1t_l9r_go_relaxed.owl L-valine aminotransferase activity EC:2.6.1.42|MetaCyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN|KEGG_REACTION:R01214|RHEA:24813 molecular_function owl:Class GO:0048839 biolink:NamedThing inner ear development The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061725 biolink:NamedThing cytosolic lipolysis The chemical reactions and pathways resulting in the breakdown of lipid droplets and hydrolysis of stored triglycerides occurring through the orchestrated activation of cytosolic lipases. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-08T13:42:15Z biological_process owl:Class GO:0060479 biolink:NamedThing lung cell differentiation The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features of a mature cell found in the lung. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl pulmonary cell differentiation biological_process owl:Class GO:1903106 biolink:NamedThing positive regulation of insulin receptor signaling pathway involved in determination of adult lifespan Any process that activates or increases the frequency, rate or extent of insulin receptor signaling pathway involved in determination of adult lifespan. tmpzr1t_l9r_go_relaxed.owl activation of insulin receptor signaling pathway involved in determination of adult lifespan|up regulation of insulin receptor signaling pathway of determination of adult lifespan|positive regulation of insulin receptor signaling pathway of determination of adult lifespan|activation of daf-2 receptor signaling pathway of determination of adult lifespan|up-regulation of insulin receptor signaling pathway of determination of adult lifespan|upregulation of daf-2 receptor signaling pathway of determination of adult lifespan|upregulation of insulin receptor signalling pathway of determination of adult lifespan|positive regulation of insulin receptor signalling pathway of determination of adult lifespan|up-regulation of daf-2 receptor signaling pathway of determination of adult lifespan|activation of insulin receptor signaling pathway of determination of adult lifespan|up regulation of insulin receptor signaling pathway involved in determination of adult lifespan|up-regulation of insulin receptor signaling pathway involved in determination of adult lifespan|activation of insulin receptor signalling pathway of determination of adult lifespan|upregulation of insulin receptor signaling pathway involved in determination of adult lifespan|positive regulation of daf-2 receptor signaling pathway of determination of adult lifespan|up regulation of daf-2 receptor signaling pathway of determination of adult lifespan|upregulation of insulin receptor signaling pathway of determination of adult lifespan|up regulation of insulin receptor signalling pathway of determination of adult lifespan|up-regulation of insulin receptor signalling pathway of determination of adult lifespan kmv 2014-06-05T20:56:19Z biological_process owl:Class GO:1901047 biolink:NamedThing insulin receptor signaling pathway involved in determination of adult lifespan The series of molecular signals generated as a consequence of the insulin receptor binding to insulin that controls viability and duration in the adult phase of the life-cycle. tmpzr1t_l9r_go_relaxed.owl daf-2 receptor signaling pathway of determination of adult lifespan|insulin receptor signaling pathway of determination of adult lifespan|insulin receptor signalling pathway of determination of adult lifespan kmv 2012-06-27T06:55:18Z biological_process owl:Class GO:0070616 biolink:NamedThing regulation of thiamine diphosphate biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine diphosphate. tmpzr1t_l9r_go_relaxed.owl regulation of thiamine diphosphate biosynthesis|regulation of thiamin diphosphate biosynthetic process|regulation of thiamine diphosphate formation|regulation of thiamine diphosphate synthesis|regulation of thiamine diphosphate anabolism mah 2009-04-29T03:37:35Z biological_process owl:Class GO:0009229 biolink:NamedThing thiamine diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. tmpzr1t_l9r_go_relaxed.owl thiamine diphosphate formation|thiamine pyrophosphate biosynthesis|TPP biosynthetic process|thiamine pyrophosphate biosynthetic process|thiamine diphosphate synthesis|TPP biosynthesis|thiamine diphosphate anabolism|thiamin diphosphate biosynthetic process|thiamin pyrophosphate biosynthesis|thiamine diphosphate biosynthesis|thiamin pyrophosphate biosynthetic process biological_process owl:Class GO:0016346 biolink:NamedThing male meiotic chromosome movement towards spindle pole The directed movement of chromosomes in the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during male meiosis. tmpzr1t_l9r_go_relaxed.owl male meiotic chromosome movement|chromosome movement towards spindle pole during male meiosis|male meiotic chromosome movement to spindle pole biological_process owl:Class GO:0099166 biolink:NamedThing intrinsic component of postsynaptic specialization membrane of symmetric synapse The component of the postsynaptic specialization membrane of a symmetric synapse consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic specialization membrane of symmetric synapse dos 2017-09-10T11:56:47Z cellular_component owl:Class GO:0099164 biolink:NamedThing postsynaptic specialization membrane of symmetric synapse The membrane component of the postsynaptic specialization of a symmetic synapse. This is the region of the postsynaptic membrane in which the population of neurotransmitter receptors involved in synaptic transmission are concentrated. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-10T11:50:44Z cellular_component owl:Class GO:2000411 biolink:NamedThing negative regulation of thymocyte migration Any process that stops, prevents or reduces the frequency, rate or extent of thymocyte migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of immature T lymphocyte migration|negative regulation of thymic lymphocyte migration|negative regulation of immature T-cell migration|negative regulation of immature T cell migration|negative regulation of immature T-lymphocyte migration mah 2011-02-23T01:34:01Z biological_process owl:Class GO:0072679 biolink:NamedThing thymocyte migration The movement of a thymocyte through distinct intrathymic niches (e.g. medulla, cortex), where it receives a unique set of developmental cues required for T-cell development. tmpzr1t_l9r_go_relaxed.owl immature T lymphocyte migration|immature T-cell migration|immature T cell migration|thymic lymphocyte migration|immature T-lymphocyte migration mah 2011-02-22T03:47:51Z biological_process owl:Class GO:0010228 biolink:NamedThing vegetative to reproductive phase transition of meristem The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. tmpzr1t_l9r_go_relaxed.owl flowering|floral evocation|transition from vegetative to reproductive phase biological_process owl:Class GO:0038007 biolink:NamedThing netrin-activated signaling pathway A series of molecular events initiated by the binding of a netrin protein to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Netrins can act as chemoattractant signals for some cells and chemorepellent signals for others. Netrins also have roles outside of cell and axon guidance. tmpzr1t_l9r_go_relaxed.owl netrin-activated signal transduction pathway|netrin-activated signalling pathway|netrin signaling pathway|netrin-mediated signaling pathway bf 2011-06-10T02:24:59Z biological_process owl:Class GO:0002777 biolink:NamedThing antimicrobial peptide biosynthetic process The chemical reactions and pathways resulting in the formation of an antimicrobial peptide. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060531 biolink:NamedThing neuroendocrine cell differentiation involved in prostate gland acinus development The process in which relatively unspecialized cells acquires specialized structural and functions of a neuroendocrine cell of the prostate gland acinus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021571 biolink:NamedThing rhombomere 5 development The process whose specific outcome is the progression of rhombomere 5 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000388 biolink:NamedThing spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Rearrangement of the pre-catalytic spliceosome containing U4 (or U4atac) and U1 (or U11) snRNPs to unpair U4 (or U4atac) from U6 (or U6atac) and release it from the spliceosomal complex along with U1 (or U11). tmpzr1t_l9r_go_relaxed.owl spliceosomal B2 complex biosynthesis|spliceosomal B2 complex formation|U12-type spliceosome conformational change to release U4atac and U11|U2-type spliceosome conformational change to release U4 and U1|3'-splice site cleavage, exon ligation|spliceosomal A1 complex biosynthesis|spliceosomal A1 complex formation Note that this step represents formation of the A1 complex (yeast) or the B2 complex (mammalian). GO:0000397|GO:0000396 biological_process owl:Class GO:0045719 biolink:NamedThing negative regulation of glycogen biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen. tmpzr1t_l9r_go_relaxed.owl negative regulation of glycogen biosynthesis|negative regulation of glycogen synthesis|negative regulation of glycogen formation|downregulation of glycogen biosynthetic process|down regulation of glycogen biosynthetic process|inhibition of glycogen biosynthetic process|negative regulation of glycogen anabolism|down-regulation of glycogen biosynthetic process biological_process owl:Class GO:0005978 biolink:NamedThing glycogen biosynthetic process The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. tmpzr1t_l9r_go_relaxed.owl glycogen biosynthesis|glycogen anabolism|glycogen synthesis|glycogen formation MetaCyc:GLYCOGENSYNTH-PWY biological_process owl:Class GO:0009310 biolink:NamedThing amine catabolic process The chemical reactions and pathways resulting in the breakdown of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. tmpzr1t_l9r_go_relaxed.owl amine catabolism|amine degradation|amine breakdown biological_process owl:Class GO:0061632 biolink:NamedThing RNA lariat debranching enzyme activator activity Increases the activity of an enzyme that catalyzes the hydrolysis of branched RNA structures that contain vicinal 2'-5'- and 3'-5'-phosphodiester bonds at a branch point nucleotide. tmpzr1t_l9r_go_relaxed.owl dph 2014-06-17T10:07:31Z molecular_function owl:Class GO:0008419 biolink:NamedThing RNA lariat debranching enzyme activity Catalysis of the hydrolysis of branched RNA structures that contain vicinal 2'-5'- and 3'-5'-phosphodiester bonds at a branch point nucleotide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045261 biolink:NamedThing proton-transporting ATP synthase complex, catalytic core F(1) The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, F1 sector cellular_component owl:Class GO:1902274 biolink:NamedThing positive regulation of (R)-carnitine transmembrane transport Any process that activates or increases the frequency, rate or extent of (R)-carnitine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl activation of (R)-carnitine transmembrane transport|upregulation of (R)-carnitine transmembrane transport|up-regulation of (R)-carnitine transmembrane transport|up regulation of (R)-carnitine transmembrane transport mcc 2013-07-01T13:13:22Z biological_process owl:Class GO:1902270 biolink:NamedThing (R)-carnitine transmembrane transport The process in which (R)-carnitine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl mcc 2013-06-28T21:57:39Z biological_process owl:Class GO:0080009 biolink:NamedThing mRNA methylation The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075045 biolink:NamedThing regulation of formation by symbiont of haustorium for nutrient acquisition from host Any process that modulates the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0052094 biolink:NamedThing formation of haustorium for nutrient acquisition The assembly of a haustorium, a projection from a symbiotic cell or tissue that penetrates the host's tissues for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation by organism of haustorium for nutrient acquisition from host|formation by organism of haustoria for nutrient acquisition from host|formation by symbiont of haustorium for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 biological_process owl:Class GO:1905446 biolink:NamedThing regulation of mitochondrial ATP synthesis coupled electron transport Any process that modulates the frequency, rate or extent of mitochondrial ATP synthesis coupled electron transport. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial electron transport|regulation of organelle ATP synthesis coupled electron transport dph 2016-09-15T18:57:58Z biological_process owl:Class GO:0042775 biolink:NamedThing mitochondrial ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP, as it occurs in the mitochondrial inner membrane or chloroplast thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl organelle ATP synthesis coupled electron transport|mitochondrial electron transport biological_process owl:Class GO:1905760 biolink:NamedThing post-anaphase array microtubule end Any microtubule end that is part of a post-anaphase array microtubule. tmpzr1t_l9r_go_relaxed.owl microtubule end of microtubule of post-anaphase microtubule array|microtubule end of post-anaphase array microtubule|microtubule end of neurotubule of post-anaphase array|microtubule end of microtubuli of post-anaphase microtubule array|microtubule end of neurotubule of post-anaphase microtubule array|microtubule end of microtubuli of post-anaphase array|microtubule end of microtubulus of PAA|microtubule end of neurotubule of PAA|microtubule end of microtubulus of post-anaphase microtubule array|microtubule end of microtubuli of PAA|microtubule end of microtubule of PAA|microtubule end of microtubulus of post-anaphase array|microtubule end of microtubule of post-anaphase array dos 2016-12-12T19:38:32Z cellular_component owl:Class GO:0048796 biolink:NamedThing swim bladder maturation A developmental process, independent of morphogenetic (shape) change, that is required for a swim bladder to attain its fully functional state. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ. tmpzr1t_l9r_go_relaxed.owl gas bladder maturation biological_process owl:Class GO:1903146 biolink:NamedThing regulation of autophagy of mitochondrion Any process that modulates the frequency, rate or extent of mitochondrion degradation by an autophagic process. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrion degradation bf 2014-07-09T08:23:51Z biological_process owl:Class GO:0000422 biolink:NamedThing autophagy of mitochondrion The autophagic process in which mitochondria are delivered to a type of vacuole and degraded in response to changing cellular conditions. tmpzr1t_l9r_go_relaxed.owl mitochondrion autophagy|mitophagy Wikipedia:Autophagy_(cellular)#Selective_autophagy|Wikipedia:Mitophagy biological_process owl:Class GO:0090676 biolink:NamedThing calcium ion transmembrane transport via low voltage-gated calcium channel A process in which a calcium ion is transported from one side of a membrane to the other by means of a low voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl generation of T-type calcium current tb 2016-03-23T10:15:23Z biological_process owl:Class GO:0008332 biolink:NamedThing low voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a low voltage-gated channel. A low voltage-gated channel is a channel whose open state is dependent on low voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl low voltage-dependent calcium channel activity|T-type calcium channel|low voltage gated calcium channel activity molecular_function owl:Class GO:0048668 biolink:NamedThing collateral sprouting The process in which outgrowths develop from the shafts of existing axons. tmpzr1t_l9r_go_relaxed.owl axon branching biological_process owl:Class GO:0046545 biolink:NamedThing development of primary female sexual characteristics The process whose specific outcome is the progression of the primary female sexual characteristics over time, from their formation to the mature structure. The primary female sexual characteristics are the ovaries, and they develop in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001216 biolink:NamedThing negative regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity Any process that stops, prevents or reduces the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of HMG-CoA reductase activity|negative regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity bf 2011-11-16T11:34:17Z biological_process owl:Class GO:0070111 biolink:NamedThing organellar chromatophore A bacteroid-containing symbiosome in which the bacterial component is a genetically highly reduced cyanobacterium that is photosynthetically active and incapable of an independent existence outside its host. The chromatophore functions as a photosynthetic organelle, and has been found and characterized in the amoeba Paulinella chromatophora. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore cellular_component owl:Class GO:0021656 biolink:NamedThing rhombomere 2 structural organization The process that contributes to creating the structural organization of rhombomere 2. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 2 structural organisation biological_process owl:Class GO:0021655 biolink:NamedThing rhombomere 2 morphogenesis The process in which the anatomical structure of rhombomere 2 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055009 biolink:NamedThing atrial cardiac muscle tissue morphogenesis The process in which the anatomical structure of cardiac atrium muscle is generated and organized. tmpzr1t_l9r_go_relaxed.owl atrial myocardium morphogenesis|cardiac atrium muscle morphogenesis|atrial heart muscle morphogenesis biological_process owl:Class GO:0003209 biolink:NamedThing cardiac atrium morphogenesis The process in which the cardiac atrium is generated and organized. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:39:44Z biological_process owl:Class GO:1903067 biolink:NamedThing negative regulation of protein localization to cell tip Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell tip. tmpzr1t_l9r_go_relaxed.owl downregulation of protein localisation to cell tip|down regulation of protein localization to cell tip|downregulation of protein localization to cell tip|inhibition of protein localisation to cell tip|down-regulation of protein localisation to cell tip|down regulation of protein localisation to cell tip|inhibition of protein localization to cell tip|negative regulation of protein localisation to cell tip|down-regulation of protein localization to cell tip vw 2014-05-28T15:48:48Z biological_process owl:Class GO:1990151 biolink:NamedThing protein localization to cell tip A process in which a protein is transported to, or maintained in, a location at the cell tip. tmpzr1t_l9r_go_relaxed.owl protein localisation to cell tip mah 2013-07-31T14:56:40Z biological_process owl:Class GO:0035711 biolink:NamedThing T-helper 1 cell activation The change in morphology and behavior of a T-helper 1 cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl Th1 cell activation bf 2011-03-02T03:05:08Z biological_process owl:Class GO:0120141 biolink:NamedThing regulation of ecdysone receptor-mediated signaling pathway Any process that modulates the frequency, rate or extent of the activity of any ecdysone receptor-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T17:10:29Z biological_process owl:Class GO:0035076 biolink:NamedThing ecdysone receptor-mediated signaling pathway The series of molecular signals generated by ecdysone binding to the ecdysone receptor complex. tmpzr1t_l9r_go_relaxed.owl ecdysone receptor-mediated signalling pathway biological_process owl:Class GO:0001916 biolink:NamedThing positive regulation of T cell mediated cytotoxicity Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl positive regulation of T cell mediated cell death|positive regulation of T cell mediated cytolysis|positive regulation of T-cell mediated cytolysis|positive regulation of T cell mediated apoptosis|upregulation of T cell mediated cytotoxicity|positive regulation of T-cell mediated cytotoxicity|positive regulation of T lymphocyte mediated cytotoxicity|positive regulation of T cell mediated cell killing|up-regulation of T cell mediated cytotoxicity|positive regulation of T-cell mediated cell killing|activation of T cell mediated cytotoxicity|up regulation of T cell mediated cytotoxicity|positive regulation of T-cell mediated apoptosis|positive regulation of T-cell mediated cell death|positive regulation of T-lymphocyte mediated cytotoxicity|stimulation of T cell mediated cytotoxicity biological_process owl:Class GO:0021696 biolink:NamedThing cerebellar cortex morphogenesis The process in which the anatomical structure of the cranial nerves are generated and organized. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900507 biolink:NamedThing negative regulation of iron-sulfur-molybdenum cofactor assembly Any process that stops, prevents or reduces the frequency, rate or extent of iron-sulfur-molybdenum cofactor assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of iron molybdenum cofactor biosynthetic process|negative regulation of iron molybdenum cofactor biosynthesis|downregulation of FeMoco biosynthetic process|downregulation of iron-sulfur-molybdenum cofactor assembly|negative regulation of FeMoco assembly|down-regulation of FeMoco assembly|downregulation of iron molybdenum cofactor biosynthesis|downregulation of FeMoco assembly|negative regulation of iron molybdenum cofactor assembly|inhibition of FeMoco biosynthetic process|inhibition of iron molybdenum cofactor assembly|down-regulation of iron molybdenum cofactor biosynthetic process|down regulation of FeMoco assembly|down-regulation of FeMoco biosynthetic process|down-regulation of iron molybdenum cofactor biosynthesis|down regulation of FeMoco biosynthetic process|down-regulation of iron molybdenum cofactor assembly|negative regulation of FeMoco biosynthetic process|down regulation of iron molybdenum cofactor assembly|down-regulation of iron-sulfur-molybdenum cofactor assembly|inhibition of FeMoco assembly|down regulation of iron molybdenum cofactor biosynthesis|downregulation of iron molybdenum cofactor biosynthetic process|inhibition of iron-sulfur-molybdenum cofactor assembly|inhibition of iron molybdenum cofactor biosynthesis|down regulation of iron-sulfur-molybdenum cofactor assembly|downregulation of iron molybdenum cofactor assembly|negative regulation of iron molybdenum cofactor biosynthetic process|inhibition of iron molybdenum cofactor biosynthetic process tt 2012-05-02T04:02:27Z biological_process owl:Class GO:0044593 biolink:NamedThing iron-sulfur-molybdenum cofactor assembly The chemical reactions and pathways resulting in the formation of iron-sulfur-molybdenum cofactor, the cofactor located at the active site of the molybdenum nitrogenase. tmpzr1t_l9r_go_relaxed.owl iron molybdenum cofactor assembly|iron molybdenum cofactor biosynthetic process|iron molybdenum cofactor biosynthesis|FeMoco biosynthetic process|FeMoco assembly jl 2012-04-26T04:01:53Z biological_process owl:Class GO:0071706 biolink:NamedThing tumor necrosis factor superfamily cytokine production The appearance of any member of the TNF superfamily due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TNF superfamily production|TNFSF cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. mah 2010-03-09T02:40:35Z biological_process owl:Class GO:0005740 biolink:NamedThing mitochondrial envelope The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905445 biolink:NamedThing positive regulation of clathrin coat assembly Any process that activates or increases the frequency, rate or extent of clathrin coat assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of clathrin coat assembly|up-regulation of clathrin coat assembly|up regulation of clathrin coat assembly|activation of clathrin cage assembly|activation of clathrin coat assembly|up regulation of clathrin cage assembly|up-regulation of clathrin cage assembly|positive regulation of clathrin cage assembly|upregulation of clathrin cage assembly bf 2016-09-15T14:38:38Z biological_process owl:Class GO:0110039 biolink:NamedThing positive regulation of nematode male tail tip morphogenesis Any process that activates or increases the frequency, rate or extent of nematode male tail tip morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T20:32:58Z biological_process owl:Class GO:0045138 biolink:NamedThing nematode male tail tip morphogenesis The process in which the anatomical structure of the adult male tail tip is generated and organized. In some species of rhabitid nematodes, the male tail tip undergoes a morphological change such that the most posterior hypodermal cells in the tail (hyp8-11 in C. elegans) fuse and retract anteriorly, changing the shape of the tail from a pointed, tapered cone, or spike, to a rounded, blunt dome. tmpzr1t_l9r_go_relaxed.owl male tail tip morphogenesis|tail tip morphogenesis|male tail morphogenesis biological_process owl:Class GO:0002072 biolink:NamedThing optic cup morphogenesis involved in camera-type eye development The invagination of the optic vesicle to form two-walled indentations, the optic cups, that will go on to form the retina. This process begins with the optic vesicle becoming a two-walled structure and its subsequent shape changes. It does not include the fate commitment of cells to become the pigmented retina and the neural retina. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl optic cup morphogenesis involved in camera-style eye development biological_process owl:Class GO:0060900 biolink:NamedThing embryonic camera-type eye formation The developmental process pertaining to the initial formation of a camera-type eye from unspecified neurectoderm. This process begins with the differentiation of cells that form the optic field and ends when the optic cup has attained its shape. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T02:26:54Z biological_process owl:Class GO:0061888 biolink:NamedThing regulation of astrocyte activation Any process that modulates the frequency, rate or extent of astrocyte activation. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-01T22:26:29Z biological_process owl:Class GO:0048143 biolink:NamedThing astrocyte activation A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098576 biolink:NamedThing lumenal side of membrane Any side (leaflet) of a membrane that faces the lumen of an organelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035745 biolink:NamedThing T-helper 2 cell cytokine production Any process that contributes to cytokine production by a T-helper 2 cell. tmpzr1t_l9r_go_relaxed.owl Th2 cell cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2011-03-17T02:23:32Z biological_process owl:Class GO:1901609 biolink:NamedThing negative regulation of vesicle transport along microtubule Any process that stops, prevents or reduces the frequency, rate or extent of vesicle transport along microtubule. tmpzr1t_l9r_go_relaxed.owl down-regulation of vesicle transport along microtubule|down regulation of vesicle transport along microtubule|downregulation of vesicle transport along microtubule|down-regulation of microtubule-based vesicle localization|inhibition of vesicle transport along microtubule|inhibition of microtubule-based vesicle localization|down regulation of microtubule-based vesicle localization|negative regulation of microtubule-based vesicle localization|downregulation of microtubule-based vesicle localization hjd 2012-11-08T21:49:48Z biological_process owl:Class GO:0001897 biolink:NamedThing cytolysis by symbiont of host cells The killing by an organism of a cell in its host organism by means of the rupture of cell membranes and the loss of cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cytolysis by organism of host cells|pathogenesis biological_process owl:Class GO:0052025 biolink:NamedThing modification by symbiont of host cell membrane The process in which an organism effects a change in the structure or function of a host cellular membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008218 biolink:NamedThing bioluminescence The production of light by certain enzyme-catalyzed reactions in cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Bioluminescence biological_process owl:Class GO:1902957 biolink:NamedThing negative regulation of mitochondrial electron transport, NADH to ubiquinone Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone. tmpzr1t_l9r_go_relaxed.owl down-regulation of oxidative phosphorylation, NADH to ubiquinone|inhibition of complex I (NADH to ubiquinone)|negative regulation of complex I (NADH to ubiquinone)|down-regulation of complex I (NADH to ubiquinone)|downregulation of mitochondrial electron transport, NADH to ubiquinone|down regulation of oxidative phosphorylation, NADH to ubiquinone|negative regulation of oxidative phosphorylation, NADH to ubiquinone|down regulation of mitochondrial electron transport, NADH to ubiquinone|inhibition of mitochondrial electron transport, NADH to ubiquinone|downregulation of complex I (NADH to ubiquinone)|down regulation of complex I (NADH to ubiquinone)|down-regulation of mitochondrial electron transport, NADH to ubiquinone|inhibition of oxidative phosphorylation, NADH to ubiquinone|downregulation of oxidative phosphorylation, NADH to ubiquinone dph 2014-05-02T15:30:18Z biological_process owl:Class GO:0006120 biolink:NamedThing mitochondrial electron transport, NADH to ubiquinone The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation. tmpzr1t_l9r_go_relaxed.owl complex I (NADH to ubiquinone)|oxidative phosphorylation, NADH to ubiquinone biological_process owl:Class GO:0030282 biolink:NamedThing bone mineralization The deposition of hydroxyapatite, a form of calcium phosphate with the formula Ca10(PO4)6(OH)2, in bone tissue. tmpzr1t_l9r_go_relaxed.owl bone calcification biological_process owl:Class GO:0002790 biolink:NamedThing peptide secretion The controlled release of a peptide from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009321 biolink:NamedThing alkyl hydroperoxide reductase complex An enzyme complex, usually a homodimer, which directly reduces cellular levels of organic hydroperoxides. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'alkyl hydroperoxide reductase activity ; GO:0008785'. cellular_component owl:Class GO:1900569 biolink:NamedThing chanoclavine-I aldehyde biosynthetic process The chemical reactions and pathways resulting in the formation of chanoclavine-I aldehyde. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I aldehyde synthesis|chanoclavine-I aldehyde biosynthesis|chanoclavine-I aldehyde anabolism|chanoclavine-I aldehyde formation di 2012-05-15T06:31:28Z biological_process owl:Class GO:1902354 biolink:NamedThing blood vessel endothelial cell delamination involved in blood vessel lumen ensheathment Any blood vessel endothelial cell delamination that is involved in blood vessel lumen ensheathment. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-14T10:22:00Z biological_process owl:Class GO:0097496 biolink:NamedThing blood vessel lumen ensheathment A blood vessel lumenization process that occurs by blood vessel endothelial cells delaminating and aligning along the inner surface of an existing luminal space, extending the open ended lumen, and joining to other blood vessels to form a complete blood vessel. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-12T13:46:45Z biological_process owl:Class GO:0090372 biolink:NamedThing positive regulation of glycerol transport Any process that increases the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:30:22Z biological_process owl:Class GO:0015793 biolink:NamedThing glycerol transport The directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035310 biolink:NamedThing notum cell fate specification The process in which a cell in the larval wing imaginal disc becomes capable of differentiating autonomously into a notum cell, if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035309 biolink:NamedThing wing and notum subfield formation The regionalization process that subdivides the wing imaginal disc into the wing and notum (body wall) subfields, thus determining whether cells ultimately differentiate wing or notum-specific structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008029 biolink:NamedThing pentraxin receptor activity Combining with a pentraxin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl pentaxin receptor Note that pentraxins include such proteins as serum amyloid P component (SAP) and C-reactive protein (CRP). molecular_function owl:Class GO:0001864 biolink:NamedThing pentraxin binding Binding to a pentraxin, a member of a family of inflammatory proteins with a radially symmetric arrangement of five identical, noncovalently linked chains in a pentagonal array. tmpzr1t_l9r_go_relaxed.owl Note that pentraxins include such proteins as serum amyloid P component (SAP) and C-reactive protein (CRP). molecular_function owl:Class GO:1903282 biolink:NamedThing regulation of glutathione peroxidase activity Any process that modulates the frequency, rate or extent of glutathione peroxidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of reduced glutathione peroxidase activity|regulation of GSH peroxidase activity|regulation of non-selenium glutathione peroxidase activity|regulation of selenium-glutathione peroxidase activity|regulation of glutathione:hydrogen-peroxide oxidoreductase activity bf 2014-08-11T13:14:13Z biological_process owl:Class GO:0045188 biolink:NamedThing regulation of circadian sleep/wake cycle, non-REM sleep Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep. tmpzr1t_l9r_go_relaxed.owl regulation of non-REM sleep biological_process owl:Class GO:0042748 biolink:NamedThing circadian sleep/wake cycle, non-REM sleep All sleep stages in the circadian sleep/wake cycle other than REM sleep. These stages are characterized by a slowing of brain waves and other physiological functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042320 biolink:NamedThing regulation of circadian sleep/wake cycle, REM sleep Any process that modulates the frequency, rate or extent of rapid eye movement (REM) sleep. tmpzr1t_l9r_go_relaxed.owl regulation of REM sleep biological_process owl:Class GO:0042747 biolink:NamedThing circadian sleep/wake cycle, REM sleep A stage in the circadian sleep cycle during which dreams occur and the body undergoes marked changes including rapid eye movement, loss of reflexes, and increased pulse rate and brain activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032249 biolink:NamedThing regulation of adenosine transport Any process that modulates the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032238 biolink:NamedThing adenosine transport The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033369 biolink:NamedThing establishment of protein localization to mast cell secretory granule The directed movement of a protein to a location within a secretory granule in a mast cell. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization in mast cell secretory granule|establishment of protein localisation in mast cell secretory granule biological_process owl:Class GO:0033367 biolink:NamedThing protein localization to mast cell secretory granule A process in which a protein is transported to, or maintained in, a location within a secretory granule in a mast cell. tmpzr1t_l9r_go_relaxed.owl protein localisation in mast cell secretory granule|protein localization in mast cell secretory granule biological_process owl:Class GO:0062155 biolink:NamedThing curli secretion complex A protein-containing complex that serves as a channel for the secretion of curli. Curli are a fibers that serve as a major component of the extracellular matrix of pellicle biofilms. tmpzr1t_l9r_go_relaxed.owl dph 2019-09-20T14:05:13Z cellular_component owl:Class GO:1904625 biolink:NamedThing negative regulation of glycine secretion, neurotransmission Any process that stops, prevents or reduces the frequency, rate or extent of glycine secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl downregulation of glycine secretion, neurotransmission|down regulation of glycine secretion, neurotransmission|down-regulation of glycine secretion, neurotransmission|inhibition of glycine secretion, neurotransmission hjd 2015-08-27T20:03:44Z biological_process owl:Class GO:0061537 biolink:NamedThing glycine secretion, neurotransmission The controlled release of glycine by a cell, in which glycine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:19:02Z biological_process owl:Class GO:0007409 biolink:NamedThing axonogenesis De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells. tmpzr1t_l9r_go_relaxed.owl axon morphogenesis|neuron long process generation|axon growth Note that 'axonogenesis' differs from 'axon development' in that the latter also covers other processes, such as axon regeneration (regrowth after loss or damage, not necessarily of the whole axon). GO:0007410 biological_process owl:Class GO:1904504 biolink:NamedThing positive regulation of lipophagy Any process that activates or increases the frequency, rate or extent of lipophagy. tmpzr1t_l9r_go_relaxed.owl upregulation of lipophagy|activation of lipophagy|up regulation of lipophagy|up-regulation of lipophagy dph 2015-07-24T11:37:24Z biological_process owl:Class GO:0061724 biolink:NamedThing lipophagy The selective autophagy process in which lipid droplets are delivered to the vacuole and degraded in response to changing cellular conditions. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-08T13:38:19Z biological_process owl:Class GO:0072042 biolink:NamedThing regulation of mesenchymal stem cell proliferation involved in nephron morphogenesis Any process that modulates the frequency, rate or extent of mesenchymal stem cell proliferation and contributes to the shaping of a nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:11:26Z biological_process owl:Class GO:0033039 biolink:NamedThing salty taste receptor activity Combining with soluble salty compounds to initiate a change in cell activity. These receptors are responsible for the sense of salty taste. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903922 biolink:NamedThing negative regulation of protein processing in phagocytic vesicle Any process that stops, prevents or reduces the frequency, rate or extent of protein processing in phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl down regulation of peptidolysis during protein maturation in phagosome|down-regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|down-regulation of peptidolysis during protein maturation in phagosome|negative regulation of protein maturation by proteolysis in phagosome|negative regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|down regulation of protein maturation by proteolysis in phagosome|downregulation of protein maturation by peptide bond cleavage in phagocytic vesicle|downregulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|down regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|down regulation of peptidolysis during protein maturation in phagocytic vesicle|inhibition of protein processing in phagocytic vesicle|negative regulation of protein maturation by proteolysis in phagocytic vesicle|negative regulation of protein processing in phagosome|downregulation of protein maturation by peptide bond cleavage in phagosome|down regulation of protein processing in phagocytic vesicle|downregulation of protein maturation by proteolysis in phagocytic vesicle|down regulation of protein processing in phagosome|inhibition of protein maturation by proteolysis in phagocytic vesicle|negative regulation of peptidolysis during protein maturation in phagocytic vesicle|down regulation of protein maturation by proteolysis in phagocytic vesicle|downregulation of protein processing in phagosome|down regulation of protein maturation by peptide bond cleavage in phagosome|inhibition of protein maturation by peptide bond cleavage in phagosome|inhibition of protein processing in phagosome|inhibition of protein maturation by peptide bond hydrolysis in phagocytic vesicle|downregulation of peptidolysis during protein maturation in phagosome|down regulation of protein maturation by peptide bond cleavage in phagocytic vesicle|down regulation of protein maturation by peptide bond hydrolysis in phagosome|inhibition of peptidolysis during protein maturation in phagocytic vesicle|down-regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|negative regulation of protein maturation by peptide bond cleavage in phagosome|down-regulation of protein processing in phagocytic vesicle|negative regulation of protein maturation by peptide bond hydrolysis in phagosome|inhibition of protein maturation by peptide bond cleavage in phagocytic vesicle|down-regulation of peptidolysis during protein maturation in phagocytic vesicle|downregulation of protein processing in phagocytic vesicle|inhibition of peptidolysis during protein maturation in phagosome|inhibition of protein maturation by peptide bond hydrolysis in phagosome|down-regulation of protein maturation by peptide bond cleavage in phagosome|downregulation of protein maturation by peptide bond hydrolysis in phagosome|inhibition of protein maturation by proteolysis in phagosome|negative regulation of peptidolysis during protein maturation in phagosome|negative regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle|downregulation of protein maturation by proteolysis in phagosome|down-regulation of protein maturation by proteolysis in phagocytic vesicle|down-regulation of protein maturation by peptide bond hydrolysis in phagosome|down-regulation of protein processing in phagosome|down-regulation of protein maturation by proteolysis in phagosome|downregulation of peptidolysis during protein maturation in phagocytic vesicle als 2015-02-10T11:17:05Z biological_process owl:Class GO:0031947 biolink:NamedThing negative regulation of glucocorticoid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl downregulation of glucocorticoid biosynthetic process|down regulation of glucocorticoid biosynthetic process|inhibition of glucocorticoid biosynthetic process|down-regulation of glucocorticoid biosynthetic process biological_process owl:Class GO:0006704 biolink:NamedThing glucocorticoid biosynthetic process The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. tmpzr1t_l9r_go_relaxed.owl glucocorticoid biosynthesis|glucocorticoid synthesis|glucocorticoid anabolism|glucocorticoid formation biological_process owl:Class GO:0001947 biolink:NamedThing heart looping The tube morphogenesis process in which the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceding their future integration. Heart looping begins with dextral-looping and ends when the main regional divisions of the mature heart and primordium of the great arterial trunks become established preceeding septation. tmpzr1t_l9r_go_relaxed.owl cardiac looping biological_process owl:Class GO:0072071 biolink:NamedThing kidney interstitial fibroblast differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the interstitial fibroblast of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl kidney interstitial cell differentiation mah 2010-01-25T04:34:31Z biological_process owl:Class GO:0048703 biolink:NamedThing embryonic viscerocranium morphogenesis The process in which the anatomical structures of the viscerocranium are generated and organized during the embryonic phase. The viscerocranium is the part of the skull comprising the facial bones. tmpzr1t_l9r_go_relaxed.owl embryonic pharyngeal skeleton morphogenesis biological_process owl:Class GO:0005850 biolink:NamedThing eukaryotic translation initiation factor 2 complex Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA. tmpzr1t_l9r_go_relaxed.owl eIF2|eIF-2 Wikipedia:EIF-2 cellular_component owl:Class GO:0090726 biolink:NamedThing cortical dynamic polarity patch A region of the cell cortex that contains a higher concentration of growth polarity factors than the surrounding cortex and that changes position over time. An example is found in fission yeast cells during early mating, in which the GTPase Cdc42 dynamically to discrete zones within the cortex prior to shmoo formation. tmpzr1t_l9r_go_relaxed.owl dynamic polarity patch at the cell cortex tb 2016-11-22T16:17:02Z cellular_component owl:Class GO:0005938 biolink:NamedThing cell cortex The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. tmpzr1t_l9r_go_relaxed.owl peripheral cytoplasm|cell periphery Wikipedia:Cell_cortex cellular_component owl:Class GO:0022626 biolink:NamedThing cytosolic ribosome A ribosome located in the cytosol. tmpzr1t_l9r_go_relaxed.owl 80S ribosome|70S ribosome GO:0009281|GO:0030871|GO:0005830 cellular_component owl:Class GO:0007065 biolink:NamedThing male meiosis sister chromatid cohesion The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a male. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904791 biolink:NamedThing negative regulation of shelterin complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of shelterin complex assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of shelterin complex formation|inhibition of shelterin complex formation|down regulation of telosome assembly|down-regulation of Pot1 complex assembly|down regulation of shelterin complex formation|down regulation of Pot1-Tpz1 complex assembly|downregulation of telosome assembly|down-regulation of telosome assembly|down regulation of Pot1 complex assembly|downregulation of shelterin complex formation|inhibition of telosome assembly|inhibition of Pot1 complex assembly|downregulation of Pot1-Tpz1 complex assembly|inhibition of Pot1-Tpz1 complex assembly|downregulation of Pot1 complex assembly|negative regulation of shelterin complex formation|negative regulation of Pot1 complex assembly|down-regulation of Pot1-Tpz1 complex assembly|negative regulation of Pot1-Tpz1 complex assembly|negative regulation of telosome assembly nc 2015-11-06T16:13:11Z biological_process owl:Class GO:1902524 biolink:NamedThing positive regulation of protein K48-linked ubiquitination Any process that activates or increases the frequency, rate or extent of protein K48-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl upregulation of protein K48-linked ubiquitination|positive regulation of protein K48-linked polyubiquitination|up-regulation of protein K48-linked polyubiquitination|activation of protein K48-linked ubiquitination|up regulation of protein K48-linked polyubiquitination|activation of protein K48-linked polyubiquitination|upregulation of protein K48-linked polyubiquitination|up-regulation of protein K48-linked ubiquitination|up regulation of protein K48-linked ubiquitination An example is BIRC2 (UniProt ID Q13490) in PMID:21931591. ppm 2013-12-02T09:56:40Z biological_process owl:Class GO:0070936 biolink:NamedThing protein K48-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation. tmpzr1t_l9r_go_relaxed.owl protein K48-linked polyubiquitination mah 2009-09-21T03:25:27Z biological_process owl:Class GO:0015647 biolink:NamedThing peptidoglycan transmembrane transporter activity Enables the transfer of peptidoglycans, a class of glycoconjugates found in bacterial cell walls, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl murein transporter activity molecular_function owl:Class GO:0120266 biolink:NamedThing positive regulation of chromosome attachment to the nuclear envelope Any process that activates or increases the frequency, rate or extent of the chromosome attachment to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl activation of chromosome attachment to the nuclear envelope|stimulation of chromosome attachment to the nuclear envelope|up-regulation of chromosome attachment to the nuclear envelope|upregulation of chromosome attachment to the nuclear envelope|up regulation of chromosome attachment to the nuclear envelope https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:30:45Z biological_process owl:Class GO:0097540 biolink:NamedThing axonemal central pair Part of the axoneme consisting of the inner two microtubule doublets of the 9+2 axoneme occurring in most motile cilia. tmpzr1t_l9r_go_relaxed.owl axonemal microtubule central pair|axoneme microtubule central pair|central pair|central-pair microtubules|axoneme central pair pr 2013-12-12T11:07:09Z cellular_component owl:Class GO:0034739 biolink:NamedThing histone deacetylase activity (H4-K16 specific) Catalysis of the reaction: histone H4 N6-acetyl-L-lysine (position 16) + H2O = histone H4 L-lysine (position 16) + acetate. This reaction represents the removal of an acetyl group from lysine at position 16 of the histone H4 protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070933 biolink:NamedThing histone H4 deacetylation The modification of histone H4 by the removal of one or more acetyl groups. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-16T04:53:06Z biological_process owl:Class GO:1900205 biolink:NamedThing apoptotic process involved in metanephric nephron tubule development Any apoptotic process that is involved in metanephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl programmed cell death by apoptosis of metanephric nephron tubule development|type I programmed cell death of metanephric nephron tubule development|apoptosis of metanephric nephron tubule development|signaling (initiator) caspase activity of metanephric nephron tubule development|apoptotic program of metanephric nephron tubule development|apoptotic process of metanephric nephron tubule development|apoptotic cell death of metanephric nephron tubule development|apoptotic programmed cell death of metanephric nephron tubule development yaf 2012-03-21T01:21:45Z biological_process owl:Class GO:0044625 biolink:NamedThing envenomation resulting in negative regulation of cell migration in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the negative regulation of cell migration in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T05:07:16Z biological_process owl:Class GO:0044622 biolink:NamedThing negative regulation of cell migration in other organism Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T04:42:14Z biological_process owl:Class GO:0030126 biolink:NamedThing COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. tmpzr1t_l9r_go_relaxed.owl coatomer GO:0017167 cellular_component owl:Class GO:0017077 biolink:NamedThing oxidative phosphorylation uncoupler activity Enables the transfer of protons from mitochondrial intermembrane space into mitochondrial matrix, dissipating the proton gradient across the mitochondrial inner membrane established by the electron transport chain during the oxidative phosphorylation (proton leak). Proton leak uncouples the processes of electron transport/proton generation and ATP synthesis. tmpzr1t_l9r_go_relaxed.owl uncoupling protein activity|mitochondrial uncoupling protein activity GO:0015302 molecular_function owl:Class GO:0044166 biolink:NamedThing host cell endoplasmic reticulum lumen The volume enclosed by the membranes of the host cell endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl host endoplasmic reticulum lumen jl 2009-09-04T11:13:30Z cellular_component owl:Class GO:0044165 biolink:NamedThing host cell endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). tmpzr1t_l9r_go_relaxed.owl host endoplasmic reticulum jl 2009-09-04T11:08:09Z cellular_component owl:Class GO:0015279 biolink:NamedThing store-operated calcium channel activity A ligand-gated ion channel activity which transports calcium in response to emptying of intracellular calcium stores. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-434798 molecular_function owl:Class GO:0010704 biolink:NamedThing meiotic DNA double-strand break processing involved in meiotic gene conversion The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang resulting in the transfer of genetic information from one helix to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905858 biolink:NamedThing regulation of heparan sulfate proteoglycan binding Any process that modulates the frequency, rate or extent of heparan sulfate proteoglycan binding. tmpzr1t_l9r_go_relaxed.owl regulation of heparin proteoglycan binding bc 2017-01-23T14:25:10Z biological_process owl:Class GO:0044799 biolink:NamedThing NarGHI complex A heterotrimeric protein complex with iron-sulfur and molybdenum cofactors that functions as a terminal reductase in electron transport pathways that operate during anaerobic nitrate respiration. In E. coli electrons are passed from the FdnGHI complex to the NarGHI complex via menoquinone and menaquinol. Within NarGHI, electrons are passed from the two heme molecules in the NarI subunit down a Fe-S cluster chain in the NarH and NarG subunits to the Molybdenum cofactor, Mo-bisMGD, in the NarG subunit. tmpzr1t_l9r_go_relaxed.owl cytoplasmic membrane-bound quinol-nitrate oxidoreductase|nitrate reductase A jl 2013-08-29T14:17:41Z cellular_component owl:Class GO:0070470 biolink:NamedThing plasma membrane respirasome A respiratory chain located in the plasma membrane of a cell; made up of the protein complexes that form the electron transport system (the respiratory chain), associated with the plasma membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl plasma membrane respiratory chain|plasma membrane electron transport chain https://github.com/geneontology/go-ontology/issues/12846 cellular_component owl:Class GO:0021555 biolink:NamedThing midbrain-hindbrain boundary morphogenesis The process in which the anatomical structure of the midbrain-hindbrain boundary is generated and organized. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl isthmus morphogenesis|MHB morphogenesis biological_process owl:Class GO:0051208 biolink:NamedThing sequestering of calcium ion The process of binding or confining calcium ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl calcium ion (Ca2+) sequestration|calcium ion (Ca2+) storage|sequestration of calcium ion (Ca2+)|calcium ion storage activity|retention of calcium ion (Ca2+)|calcium ion (Ca2+) sequestering|sequestering of calcium ion (Ca2+)|storage of calcium ion (Ca2+)|calcium ion (Ca2+) retention|negative regulation of calcium ion (Ca2+) transport biological_process owl:Class GO:0021602 biolink:NamedThing cranial nerve morphogenesis The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007114 biolink:NamedThing cell budding A form of asexual reproduction, occurring in certain bacteria and fungi (e.g. yeasts) and some primitive animals in which an individual arises from a daughter cell formed by pinching off a part of the parent cell. The budlike outgrowths so formed may sometimes remain attached to the parent cell. tmpzr1t_l9r_go_relaxed.owl budding biological_process owl:Class GO:0048705 biolink:NamedThing skeletal system morphogenesis The process in which the anatomical structures of the skeleton are generated and organized. tmpzr1t_l9r_go_relaxed.owl skeletal morphogenesis biological_process owl:Class GO:1904835 biolink:NamedThing dorsal root ganglion morphogenesis The developmental process by which a dorsal root ganglion is generated and organized. tmpzr1t_l9r_go_relaxed.owl ganglion spinale morphogenesis|posterior root ganglion morphogenesis|ganglion spinalis morphogenesis|spinal ganglion part of peripheral nervous system morphogenesis|dorsal root ganglia morphogenesis|spinal ganglion morphogenesis|DRG morphogenesis|ganglion of dorsal root morphogenesis|ganglion sensorium nervi spinalis morphogenesis bf 2015-12-01T16:41:17Z biological_process owl:Class GO:1990791 biolink:NamedThing dorsal root ganglion development The process whose specific outcome is the progression of a dorsal root ganglion over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl DRG development sl 2015-07-02T22:09:54Z biological_process owl:Class GO:0032209 biolink:NamedThing positive regulation of telomere maintenance via recombination Any process that activates or increases the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length. tmpzr1t_l9r_go_relaxed.owl up regulation of telomere maintenance via recombination|stimulation of telomere maintenance via recombination|activation of telomere maintenance via recombination|upregulation of telomere maintenance via recombination|up-regulation of telomere maintenance via recombination biological_process owl:Class GO:0000722 biolink:NamedThing telomere maintenance via recombination Any recombinational process that contributes to the maintenance of proper telomeric length. tmpzr1t_l9r_go_relaxed.owl telomerase-independent telomere maintenance biological_process owl:Class GO:0021997 biolink:NamedThing neural plate axis specification The pattern specification process in which the axes of the nervous system are established. tmpzr1t_l9r_go_relaxed.owl neural plate axis determination biological_process owl:Class GO:1904256 biolink:NamedThing positive regulation of iron ion transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of an iron transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl activation of iron channel activity|upregulation of iron channel activity|up-regulation of iron cation channel activity|positive regulation of iron-specific channel activity|activation of iron cation channel activity|up regulation of iron cation channel activity|positive regulation of iron channel activity|upregulation of iron cation channel activity|up regulation of iron channel activity|up-regulation of iron-specific channel activity|positive regulation of iron cation channel activity|upregulation of iron-specific channel activity|positive regulation of iron transmembrane transporter activity|activation of iron-specific channel activity|up-regulation of iron channel activity|up regulation of iron-specific channel activity kom 2015-05-20T14:05:12Z biological_process owl:Class GO:0005381 biolink:NamedThing iron ion transmembrane transporter activity Enables the transfer of iron (Fe) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl multicopper ferroxidase iron transport mediator activity|iron transporter activity|zinc, iron permease activity|iron cation channel activity|iron channel activity|transmembrane iron permease activity|transmembrane iron ion permease activity https://github.com/geneontology/go-ontology/issues/17162 Reactome:R-HSA-904830|Reactome:R-HSA-917936|Reactome:R-HSA-5623558|Reactome:R-HSA-435349|Reactome:R-HSA-5655733 An example of this is mouse ferroportin (UniProtKB:Q9JHI9), which transports iron out of the cell. GO:0097689|GO:0005382|GO:0016033 molecular_function owl:Class GO:0007600 biolink:NamedThing sensory perception The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Perception biological_process owl:Class GO:0010085 biolink:NamedThing polarity specification of proximal/distal axis Any process resulting in the establishment of polarity along the proximal/distal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009946 biolink:NamedThing proximal/distal axis specification The establishment, maintenance and elaboration of the proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). tmpzr1t_l9r_go_relaxed.owl proximodistal axis specification|proximal/distal axis determination biological_process owl:Class GO:0061774 biolink:NamedThing cohesin unloading Negative regulation of sister chromatid cohesion by the topological unlinking of a cohesin ring to DNA. tmpzr1t_l9r_go_relaxed.owl DNA exit from the cohesin ring dph 2016-07-13T12:40:25Z biological_process owl:Class GO:2000932 biolink:NamedThing positive regulation of cellobiose metabolic process Any process that activates or increases the frequency, rate or extent of cellobiose metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellobiose metabolism tt 2011-08-01T12:43:01Z biological_process owl:Class GO:0035003 biolink:NamedThing subapical complex The most apical region of the lateral plasma membrane of an invertebrate epithelial cell. The subapical complex lies above the zonula adherens and the septate junction, and is comparable to the position of the tight junction of vertebrate cells. tmpzr1t_l9r_go_relaxed.owl SAC cellular_component owl:Class GO:0060750 biolink:NamedThing epithelial cell proliferation involved in mammary gland duct elongation The multiplication or reproduction of mammary gland branch epithelial cells, resulting in the elongation of the branch. The mammary gland branch differs from the bud in that it is not the initial curved portion of the outgrowth. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T10:58:12Z biological_process owl:Class GO:0060751 biolink:NamedThing branch elongation involved in mammary gland duct branching The developmental growth process in which a branch of a mammary gland duct elongates. tmpzr1t_l9r_go_relaxed.owl mammary gland duct branch elongation dph 2009-06-22T11:02:44Z biological_process owl:Class GO:0001706 biolink:NamedThing endoderm formation The formation of the endoderm during gastrulation. tmpzr1t_l9r_go_relaxed.owl endoblast formation biological_process owl:Class GO:0007492 biolink:NamedThing endoderm development The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051329 biolink:NamedThing mitotic interphase The cell cycle phase following cytokinesis which begins with G1 phase, proceeds through S phase and G2 phase and ends when mitotic prophase begins. During interphase the cell readies itself for mitosis and the replication of its DNA occurs. tmpzr1t_l9r_go_relaxed.owl interphase of mitotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0075310 biolink:NamedThing regulation of sporangium development Any process that modulates the frequency, rate or extent of sporangium development, a process that leads to the formation of sporangium, a single-celled or many-celled structure in which spores are produced, as in fungi, algae, mosses, and ferns, gymnosperms, angiosperms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010208 biolink:NamedThing pollen wall assembly The formation of reticulate pollen wall pattern consisting of two layers, exine and intine. tmpzr1t_l9r_go_relaxed.owl pollen wall formation biological_process owl:Class GO:0009555 biolink:NamedThing pollen development The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. tmpzr1t_l9r_go_relaxed.owl microgametophyte development|male gametophyte development|male gametophyte formation|formation of generative and vegetative cells|pollen grain formation GO:0009564|GO:0048231 biological_process owl:Class GO:0071472 biolink:NamedThing cellular response to salt stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl cellular response to ionic osmotic stress|cellular salinity response mah 2009-12-18T11:48:23Z biological_process owl:Class GO:0045061 biolink:NamedThing thymic T cell selection The process of T cell selection that occurs in the thymus. tmpzr1t_l9r_go_relaxed.owl thymic T lymphocyte selection|thymic T-lymphocyte selection|thymic T-cell selection biological_process owl:Class GO:1900660 biolink:NamedThing positive regulation of emericellamide biosynthetic process Any process that activates or increases the frequency, rate or extent of emericellamide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of emericellamide formation|activation of emericellamide biosynthesis|upregulation of emericellamide synthesis|up-regulation of emericellamide anabolism|up regulation of emericellamide biosynthetic process|activation of emericellamide formation|activation of emericellamide biosynthetic process|up-regulation of emericellamide biosynthesis|up regulation of emericellamide formation|upregulation of emericellamide biosynthetic process|positive regulation of emericellamide biosynthesis|up-regulation of emericellamide formation|activation of emericellamide synthesis|up-regulation of emericellamide synthesis|upregulation of emericellamide formation|upregulation of emericellamide anabolism|positive regulation of emericellamide synthesis|up regulation of emericellamide biosynthesis|up regulation of emericellamide anabolism|up-regulation of emericellamide biosynthetic process|upregulation of emericellamide biosynthesis|up regulation of emericellamide synthesis|activation of emericellamide anabolism|positive regulation of emericellamide anabolism di 2012-05-22T04:10:51Z biological_process owl:Class GO:1904930 biolink:NamedThing amphisome membrane Any membrane that is part of an amphisome. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-29T11:40:13Z cellular_component owl:Class GO:0075286 biolink:NamedThing regulation of sporangiospore formation Any process that modulates the frequency, rate or extent of sporangiospore formation, a process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061357 biolink:NamedThing positive regulation of Wnt protein secretion Any process that activates or increases the frequency, rate or extent of the controlled release of a Wnt protein from a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-08T01:12:21Z biological_process owl:Class GO:0005460 biolink:NamedThing UDP-glucose transmembrane transporter activity Enables the transfer of a UDP-glucose from one side of a membrane to the other. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015786 biolink:NamedThing UDP-glucose transmembrane transport The process in which UDP-glucose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900208 biolink:NamedThing regulation of cardiolipin metabolic process Any process that modulates the frequency, rate or extent of cardiolipin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of diphosphatidylglycerol metabolic process|regulation of diphosphatidylglycerol metabolism|regulation of cardiolipin metabolism jl 2012-03-22T10:43:33Z biological_process owl:Class GO:0035183 biolink:NamedThing female germline ring canal inner rim A proteinaceous actin-rich layer of the insect ovarian ring canal that forms subcortically to the outer rim. The electron dense inner rim accumulates after the final mitotic division of each germline syncytia, and contains actin, a phosphotyrosine protein, and a number of cytoskeletal proteins. tmpzr1t_l9r_go_relaxed.owl ovarian ring canal inner rim|germline ring canal inner rim|nurse cell ring canal inner rim See also the fly_anatomy.ontology term 'inner nurse cell ring canal rim ; FBbt:00004881'. cellular_component owl:Class GO:0035324 biolink:NamedThing female germline ring canal An intercellular bridge that connects the germline cells of a female cyst. tmpzr1t_l9r_go_relaxed.owl nurse cell ring canal|ovarian ring canal bf 2010-02-25T11:06:41Z cellular_component owl:Class GO:0035368 biolink:NamedThing selenocysteine insertion sequence binding Binding to a selenocysteine insertion sequence (SECIS), a regulatory sequence within mRNA which directs incorporation of a selenocysteine at a stop codon (UGA) during translation. tmpzr1t_l9r_go_relaxed.owl SECIS binding bf 2010-03-11T10:42:28Z molecular_function owl:Class GO:2000294 biolink:NamedThing positive regulation of defecation Any process that activates or increases the frequency, rate or extent of defecation. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-21T09:23:16Z biological_process owl:Class GO:0030421 biolink:NamedThing defecation The expulsion of feces from the rectum. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Defecation biological_process owl:Class GO:0030890 biolink:NamedThing positive regulation of B cell proliferation Any process that activates or increases the rate or extent of B cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of B cell proliferation|stimulation of B cell proliferation|up regulation of B cell proliferation|positive regulation of B lymphocyte proliferation|positive regulation of B-cell proliferation|up-regulation of B cell proliferation|activation of B cell proliferation|positive regulation of B-lymphocyte proliferation biological_process owl:Class GO:1905881 biolink:NamedThing positive regulation of oogenesis Any process that activates or increases the frequency, rate or extent of oogenesis. tmpzr1t_l9r_go_relaxed.owl upregulation of ovum development|activation of ovum development|activation of oogenesis|up regulation of oogenesis|up-regulation of ovum development|positive regulation of ovum development|up-regulation of oogenesis|upregulation of oogenesis|up regulation of ovum development hbye 2017-01-31T09:31:23Z biological_process owl:Class GO:1904651 biolink:NamedThing positive regulation of fat cell apoptotic process Any process that activates or increases the frequency, rate or extent of fat cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of adipocyte apoptotic process|upregulation of adipose cell apoptotic process|activation of adipose cell apoptosis|up-regulation of fat cell apoptotic process|positive regulation of fat cell apoptosis|up regulation of adipose cell apoptotic process|up-regulation of adipocyte apoptotic process|activation of adipose cell apoptotic process|up-regulation of adipocyte apoptosis|up-regulation of fat cell apoptosis|activation of fat cell apoptotic process|up-regulation of adipose cell apoptotic process|positive regulation of adipocyte apoptotic process|activation of fat cell apoptosis|upregulation of fat cell apoptotic process|up regulation of adipose cell apoptosis|up regulation of fat cell apoptosis|positive regulation of adipose cell apoptosis|positive regulation of adipose cell apoptotic process|upregulation of adipose cell apoptosis|upregulation of adipocyte apoptosis|positive regulation of adipocyte apoptosis|up-regulation of adipose cell apoptosis|up regulation of adipocyte apoptosis|activation of adipocyte apoptosis|activation of adipocyte apoptotic process|upregulation of fat cell apoptosis|up regulation of adipocyte apoptotic process|up regulation of fat cell apoptotic process sl 2015-08-31T20:59:40Z biological_process owl:Class GO:0071971 biolink:NamedThing extracellular exosome assembly The aggregation, arrangement and bonding together of a set of components to form an extracellular vesicular exosome, a membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Exosomes are defined by their size, which generally ranges from 30 nm to 100 nm. tmpzr1t_l9r_go_relaxed.owl extracellular vesicular exosome assembly mah 2010-10-18T03:44:18Z biological_process owl:Class GO:0003303 biolink:NamedThing BMP signaling pathway involved in heart jogging A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the process of heart jogging. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in heart jogging dph 2009-10-22T11:00:58Z biological_process owl:Class GO:0003146 biolink:NamedThing heart jogging The morphogenetic process in which the heart cone is displaced to the left with respect to the vector of the anterior-posterior axis. tmpzr1t_l9r_go_relaxed.owl cardiac jogging tb 2009-09-22T06:11:41Z biological_process owl:Class GO:0030999 biolink:NamedThing linear element assembly The cell cycle process in which linear elements are assembled in association with fission yeast chromosomes during meiotic prophase. Linear element assembly begins with LinE complex formation and ends when LinE complexes are associated with chromatin in structures visible as nuclear foci. A linear element is a proteinaceous scaffold related to the synaptonemal complex. tmpzr1t_l9r_go_relaxed.owl linear element formation biological_process owl:Class GO:1905084 biolink:NamedThing positive regulation of mitochondrial translational elongation Any process that activates or increases the frequency, rate or extent of mitochondrial translational elongation. tmpzr1t_l9r_go_relaxed.owl activation of mitochondrial translation elongation|up regulation of mitochondrial translation elongation|up regulation of mitochondrial translational elongation|activation of mitochondrial translational elongation|up-regulation of mitochondrial translational elongation|upregulation of mitochondrial translational elongation|upregulation of mitochondrial translation elongation|up-regulation of mitochondrial translation elongation|positive regulation of mitochondrial translation elongation hjd 2016-03-25T17:37:22Z biological_process owl:Class GO:0070125 biolink:NamedThing mitochondrial translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial translation elongation biological_process owl:Class GO:1905880 biolink:NamedThing negative regulation of oogenesis Any process that stops, prevents or reduces the frequency, rate or extent of oogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of ovum development|negative regulation of ovum development|inhibition of ovum development|downregulation of oogenesis|down-regulation of oogenesis|down-regulation of ovum development|down regulation of oogenesis|inhibition of oogenesis|down regulation of ovum development hbye 2017-01-31T09:31:15Z biological_process owl:Class GO:0002331 biolink:NamedThing pre-B cell allelic exclusion Expression of a single heavy chain allele during pre-B cell differentiation. tmpzr1t_l9r_go_relaxed.owl pre-B lymphocyte allelic exclusion biological_process owl:Class GO:0002329 biolink:NamedThing pre-B cell differentiation The process in which a precursor cell type acquires the specialized features of a pre-B cell. Pre-B cells follow the pro-B cell stage of immature B cell differentiation and undergo rearrangement of heavy chain V, D, and J gene segments. tmpzr1t_l9r_go_relaxed.owl pre-B lymphocyte differentiation|pre-B cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0010776 biolink:NamedThing meiotic mismatch repair involved in meiotic gene conversion A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process in which genetic information is transferred from one helix to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042338 biolink:NamedThing cuticle development involved in collagen and cuticulin-based cuticle molting cycle Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl cuticle synthesis during molting|collagen and cuticulin-based cuticle development during molting|cuticle formation during molting|cuticle biosynthetic process during molting|cuticle anabolism during molting biological_process owl:Class GO:0018996 biolink:NamedThing molting cycle, collagen and cuticulin-based cuticle The periodic shedding of part or all of a collagen and cuticulin-based cuticle, which is then replaced by a new collagen and cuticulin-based cuticle. An example of this is found in the Nematode worm, Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl collagen and cuticulin-based cuticle molting cycle biological_process owl:Class GO:0033362 biolink:NamedThing lysine biosynthetic process via diaminopimelate, diaminopimelate-aminotransferase pathway The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in two enzymatic steps. tmpzr1t_l9r_go_relaxed.owl lysine anabolism via diaminopimelate, diaminopimelate-aminotransferase pathway|lysine synthesis via diaminopimelate, diaminopimelate-aminotransferase pathway|lysine formation via diaminopimelate, diaminopimelate-aminotransferase pathway|lysine biosynthesis via diaminopimelate, diaminopimelate-aminotransferase pathway MetaCyc:PWY-5097 biological_process owl:Class GO:0044292 biolink:NamedThing dendrite terminus A structure at the distal end of a dendrite adapted to carry out a specific function, e.g. dendriole. tmpzr1t_l9r_go_relaxed.owl dendrite terminal specialization|terminal specialization of a dendrite|dendrite terminal|terminal specialization NIF_Subcellular:sao28175134 jl 2010-02-04T03:14:37Z cellular_component owl:Class GO:2000095 biolink:NamedThing regulation of Wnt signaling pathway, planar cell polarity pathway Any process that modulates the frequency, rate or extent of Wnt signaling pathway, planar cell polarity pathway. tmpzr1t_l9r_go_relaxed.owl regulation of PCP pathway|regulation of Wnt-JNK signaling pathway|regulation of Wnt receptor signalling pathway, planar cell polarity pathway|regulation of Wnt-activated signaling pathway, planar cell polarity pathway|regulation of non-canonical Wnt signaling pathway|regulation of Wnt-PCP signaling pathway|regulation of Wnt receptor signaling pathway, planar cell polarity pathway jl 2010-09-08T01:07:39Z biological_process owl:Class GO:0044169 biolink:NamedThing host cell rough endoplasmic reticulum membrane The lipid bilayer surrounding the host cell rough endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl host rough endoplasmic reticulum membrane jl 2009-09-04T11:30:38Z cellular_component owl:Class GO:0044168 biolink:NamedThing host cell rough endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host rough ER has ribosomes adhering to the outer surface. tmpzr1t_l9r_go_relaxed.owl host rough endoplasmic reticulum jl 2009-09-04T11:23:28Z cellular_component owl:Class GO:0032809 biolink:NamedThing neuronal cell body membrane The plasma membrane of a neuron cell body - excludes the plasma membrane of cell projections such as axons and dendrites. tmpzr1t_l9r_go_relaxed.owl neuron cell body membrane|neuronal cell soma membrane cellular_component owl:Class GO:0043025 biolink:NamedThing neuronal cell body The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites. tmpzr1t_l9r_go_relaxed.owl neuronal cell soma|neuron cell body Wikipedia:Soma_(biology)|NIF_Subcellular:sao1044911821 Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. cellular_component owl:Class GO:0002470 biolink:NamedThing plasmacytoid dendritic cell antigen processing and presentation The process in which a plasmacytoid dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035723 biolink:NamedThing interleukin-15-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-15 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-15-mediated signalling pathway|IL-15-mediated signaling pathway bf 2011-03-07T11:28:29Z biological_process owl:Class GO:0071350 biolink:NamedThing cellular response to interleukin-15 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-15 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-15 mah 2009-12-11T02:49:51Z biological_process owl:Class GO:0035021 biolink:NamedThing negative regulation of Rac protein signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of Rac protein signal transduction. tmpzr1t_l9r_go_relaxed.owl inhibition of Rac protein signal transduction|downregulation of Rac protein signal transduction|down regulation of Rac protein signal transduction|down-regulation of Rac protein signal transduction biological_process owl:Class GO:0016601 biolink:NamedThing Rac protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Rac family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl Rac mediated signal transduction biological_process owl:Class GO:0016036 biolink:NamedThing cellular response to phosphate starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904582 biolink:NamedThing positive regulation of intracellular mRNA localization Any process that activates or increases the frequency, rate or extent of intracellular mRNA localization. tmpzr1t_l9r_go_relaxed.owl up regulation of intracellular mRNA positioning|up regulation of intracellular mRNA localization|positive regulation of intracellular mRNA localisation|upregulation of intracellular mRNA localization|activation of intracellular mRNA localization|activation of establishment and maintenance of intracellular RNA localization|activation of intracellular mRNA positioning|activation of mRNA localization, intracellular|up-regulation of mRNA localization, intracellular|upregulation of intracellular mRNA localisation|positive regulation of establishment and maintenance of intracellular RNA localization|positive regulation of mRNA localization, intracellular|up-regulation of mRNA positioning, intracellular|activation of mRNA positioning, intracellular|upregulation of mRNA positioning, intracellular|up regulation of intracellular mRNA localisation|up regulation of establishment and maintenance of intracellular RNA localization|upregulation of mRNA localization, intracellular|positive regulation of mRNA positioning, intracellular|upregulation of intracellular mRNA positioning|upregulation of establishment and maintenance of intracellular RNA localization|up regulation of mRNA localization, intracellular|up-regulation of intracellular mRNA positioning|activation of intracellular mRNA localisation|up regulation of mRNA positioning, intracellular|positive regulation of intracellular mRNA positioning|up-regulation of establishment and maintenance of intracellular RNA localization|up-regulation of intracellular mRNA localisation|up-regulation of intracellular mRNA localization sl 2015-08-19T23:40:38Z biological_process owl:Class GO:0008298 biolink:NamedThing intracellular mRNA localization Any process in which mRNA is transported to, or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl intracellular mRNA positioning|establishment and maintenance of intracellular RNA localization|mRNA positioning, intracellular|mRNA localization, intracellular|intracellular mRNA localisation biological_process owl:Class GO:0071998 biolink:NamedThing ascospore release from ascus A developmental process that results in the discharge of ascospores from the ascus. Ascospore release may be active or passive. tmpzr1t_l9r_go_relaxed.owl ascospore liberation mah 2010-10-25T03:41:44Z biological_process owl:Class GO:1901969 biolink:NamedThing positive regulation of polynucleotide 3'-phosphatase activity Any process that activates or increases the frequency, rate or extent of polynucleotide 3'-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of deoxyribonucleate 3'-phosphatase activity|upregulation of 5'-polynucleotidekinase 3'-phosphatase activity|activation of DNA 3'-phosphatase activity|up-regulation of polynucleotide 3'-phosphatase activity|up regulation of deoxyribonucleate 3'-phosphatase activity|upregulation of 2'(3')-polynucleotidase activity|up-regulation of DNA 3'-phosphatase activity|positive regulation of 5'-polynucleotidekinase 3'-phosphatase activity|activation of deoxyribonucleate 3'-phosphatase activity|upregulation of polynucleotide 3'-phosphatase activity|up regulation of 2'(3')-polynucleotidase activity|activation of 5'-polynucleotidekinase 3'-phosphatase activity|up regulation of 5'-polynucleotidekinase 3'-phosphatase activity|up-regulation of deoxyribonucleate 3'-phosphatase activity|activation of polynucleotide 3'-phosphohydrolase activity|up-regulation of 5'-polynucleotidekinase 3'-phosphatase activity|upregulation of polynucleotide 3'-phosphohydrolase activity|activation of 2'(3')-polynucleotidase activity|up regulation of polynucleotide 3'-phosphohydrolase activity|up-regulation of polynucleotide 3'-phosphohydrolase activity|positive regulation of polynucleotide 3'-phosphohydrolase activity|positive regulation of 2'(3')-polynucleotidase activity|upregulation of deoxyribonucleate 3'-phosphatase activity|upregulation of DNA 3'-phosphatase activity|up regulation of polynucleotide 3'-phosphatase activity|up regulation of DNA 3'-phosphatase activity|activation of polynucleotide 3'-phosphatase activity|positive regulation of DNA 3'-phosphatase activity|up-regulation of 2'(3')-polynucleotidase activity tb 2013-02-22T00:58:31Z biological_process owl:Class GO:0046403 biolink:NamedThing polynucleotide 3'-phosphatase activity Catalysis of the reaction: 3'-phosphopolynucleotide + H2O = a polynucleotide + phosphate. Hydrolyzes the free 3'-phosphate resulting from single strand breaks in DNA due to oxidative damage. tmpzr1t_l9r_go_relaxed.owl DNA 3'-phosphatase activity|polynucleotide 3'-phosphohydrolase activity|deoxyribonucleate 3'-phosphatase activity|5'-polynucleotidekinase 3'-phosphatase activity|2'(3')-polynucleotidase activity EC:3.1.3.32|RHEA:14113|MetaCyc:POLYNUCLEOTIDE-3-PHOSPHATASE-RXN|Reactome:R-HSA-5649705 molecular_function owl:Class GO:1902775 biolink:NamedThing mitochondrial large ribosomal subunit assembly The aggregation, arrangement and bonding together of a set of components to form a mitochondrial large ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl 39S ribosomal subunit, mitochondrial formation|mitochondrial large ribosomal subunit formation|39S ribosomal subunit, mitochondrial assembly mcc 2014-03-18T14:32:19Z biological_process owl:Class GO:0061668 biolink:NamedThing mitochondrial ribosome assembly The aggregation, arrangement and bonding together of the mitochondrial ribosome and of its subunits. tmpzr1t_l9r_go_relaxed.owl dph 2014-11-07T15:32:20Z biological_process owl:Class GO:0048843 biolink:NamedThing negative regulation of axon extension involved in axon guidance Any process that stops, prevents, or reduces the frequency, rate or extent of axon extension involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl inhibition of axon extension involved in axon guidance|downregulation of axon extension involved in axon guidance|down regulation of axon extension involved in axon guidance|down-regulation of axon extension involved in axon guidance biological_process owl:Class GO:0048846 biolink:NamedThing axon extension involved in axon guidance The long distance growth of a single cell process, that is involved in the migration of an axon growth cone, where the migration is directed to a specific target site by a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045668 biolink:NamedThing negative regulation of osteoblast differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of osteoblast differentiation|down-regulation of osteoblast differentiation|inhibition of osteoblast differentiation|down regulation of osteoblast differentiation biological_process owl:Class GO:0001649 biolink:NamedThing osteoblast differentiation The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone. tmpzr1t_l9r_go_relaxed.owl osteoblast cell differentiation biological_process owl:Class GO:0060484 biolink:NamedThing lung-associated mesenchyme development The biological process whose specific outcome is the progression of a lung-associated mesenchyme from an initial condition to its mature state. This process begins with the formation of lung-associated mesenchyme and ends with the mature structure. Lung-associated mesenchyme is the tissue made up of loosely connected mesenchymal cells in the lung. tmpzr1t_l9r_go_relaxed.owl lung mesenchyme development|pulmonary mesenchyme development biological_process owl:Class GO:0061228 biolink:NamedThing mesonephric nephron morphogenesis The process in which the anatomical structures of the mesonephric nephron are generated and organized. A mesonephric nephron is the functional unit of the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:26:24Z biological_process owl:Class GO:0070202 biolink:NamedThing regulation of establishment of protein localization to chromosome Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location on a chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of protein localisation to chromosome biological_process owl:Class GO:0070199 biolink:NamedThing establishment of protein localization to chromosome The directed movement of a protein to a specific location on a chromosome. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to chromosome biological_process owl:Class GO:0046572 biolink:NamedThing versicolorin B synthase activity Catalysis of the reaction: versiconal = versicolorin B + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:33859|EC:4.2.1.143|MetaCyc:RXN-9494 molecular_function owl:Class GO:1904888 biolink:NamedThing cranial skeletal system development The process whose specific outcome is the progression of a cranial skeletal system over time, from its formation to the mature structure. The cranial skeletal system is the skeletal subdivision of the head, and includes the skull (cranium plus mandible), pharyngeal and/or hyoid apparatus. tmpzr1t_l9r_go_relaxed.owl cranium development|craniofacial development|cranial skeleton development|osteocranium development bf 2016-01-07T13:45:06Z biological_process owl:Class GO:2000997 biolink:NamedThing regulation of cellulose catabolic process Any process that modulates the frequency, rate or extent of cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellulose breakdown|regulation of cellulose degradation|regulation of cellulose catabolism tt 2011-08-08T03:21:20Z biological_process owl:Class GO:0030245 biolink:NamedThing cellulose catabolic process The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. tmpzr1t_l9r_go_relaxed.owl cellulose degradation|cellulose catabolism|cellulose breakdown GO:0016179 biological_process owl:Class GO:1905213 biolink:NamedThing negative regulation of mitotic chromosome condensation Any process that stops, prevents or reduces the frequency, rate or extent of mitotic chromosome condensation. tmpzr1t_l9r_go_relaxed.owl vw 2016-06-03T08:41:08Z biological_process owl:Class GO:0007076 biolink:NamedThing mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070468 biolink:NamedThing dentin extracellular matrix secretion The regulated release by odontoblasts of the extracellular matrix constituents, including collagen, that form the basis of dentin. tmpzr1t_l9r_go_relaxed.owl dentine secretion|predentin secretion|dentin secretion biological_process owl:Class GO:0042475 biolink:NamedThing odontogenesis of dentin-containing tooth The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel. tmpzr1t_l9r_go_relaxed.owl odontosis|odontogenesis of dentine-containing tooth|odontogenesis of dentine-containing teeth|tooth development|odontogeny Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See Wikipedia:Placoid_scale#Placoid_scales. biological_process owl:Class GO:1900057 biolink:NamedThing positive regulation of leaf senescence Any process that activates or increases the frequency, rate or extent of leaf senescence. tmpzr1t_l9r_go_relaxed.owl up-regulation of leaf senescence|activation of leaf senescence|up regulation of leaf senescence|upregulation of leaf senescence tb 2012-01-24T11:51:36Z biological_process owl:Class GO:0010150 biolink:NamedThing leaf senescence The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900039 biolink:NamedThing positive regulation of cellular response to hypoxia Any process that activates or increases the frequency, rate or extent of cellular response to hypoxia. tmpzr1t_l9r_go_relaxed.owl activation of cellular response to lowered oxygen tension|up-regulation of cellular response to lowered oxygen tension|upregulation of cellular response to hypoxia|activation of cellular response to hypoxic stress|up-regulation of cellular response to hypoxic stress|positive regulation of cellular response to lowered oxygen tension|up regulation of cellular response to hypoxia|upregulation of cellular response to hypoxic stress|activation of cellular response to hypoxia|up regulation of cellular response to hypoxic stress|upregulation of cellular response to lowered oxygen tension|up regulation of cellular response to lowered oxygen tension|positive regulation of cellular response to hypoxic stress|up-regulation of cellular response to hypoxia yaf 2012-01-17T09:29:19Z biological_process owl:Class GO:0032710 biolink:NamedThing negative regulation of interleukin-26 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-26 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of IL-26 production|negative regulation of interleukin-26 biosynthetic process|downregulation of interleukin-26 production|down regulation of interleukin-26 production|down-regulation of interleukin-26 production|inhibition of interleukin-26 production GO:0045534 biological_process owl:Class GO:0051555 biolink:NamedThing flavonol biosynthetic process The chemical reactions and pathways resulting in the formation of flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-3101 biological_process owl:Class GO:1901029 biolink:NamedThing negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of mitochondrial outer membrane permeabilization|down regulation of MOMP|down regulation of mitochondrial outer membrane permeabilization|negative regulation of mitochondrial outer membrane permeabilization|down-regulation of MOMP|inhibition of mitochondrial outer membrane permeabilization|downregulation of MOMP|downregulation of mitochondrial outer membrane permeabilization|negative regulation of MOMP|inhibition of MOMP pr 2012-06-20T09:19:39Z biological_process owl:Class GO:0097345 biolink:NamedThing mitochondrial outer membrane permeabilization The process by which the mitochondrial outer membrane becomes permeable to the passing of proteins and other molecules from the intermembrane space to the cytosol as part of the apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl MOMP|mitochondrion outer membrane permeabilization|mitochondrial outer membrane permeabilization during apoptotic cell death BAX and BAK are involved in this process, as reviewed in PMID:21760595 (the human proteins have UniProt symbols Q07812 and Q16611 respectively). pr 2012-06-19T04:06:54Z biological_process owl:Class GO:1904210 biolink:NamedThing VCP-NPL4-UFD1 AAA ATPase complex assembly The aggregation, arrangement and bonding together of a set of components to form a VCP-NPL4-UFD1 AAA ATPase complex. tmpzr1t_l9r_go_relaxed.owl p97-Ufd1-Npl4 complex assembly|Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|VCP-NPL4-UFD1 AAA ATPase complex formation|Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|p97-Ufd1-Npl4 complex formation bf 2015-05-14T10:34:36Z biological_process owl:Class GO:0090087 biolink:NamedThing regulation of peptide transport Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:21:38Z biological_process owl:Class GO:0015833 biolink:NamedThing peptide transport The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010729 biolink:NamedThing positive regulation of hydrogen peroxide biosynthetic process Any process that increases the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of hydrogen peroxide biosynthesis biological_process owl:Class GO:0050665 biolink:NamedThing hydrogen peroxide biosynthetic process The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide anabolism|H2O2 biosynthetic process|hydrogen peroxide synthesis|hydrogen peroxide biosynthesis|hydrogen peroxide generation|hydrogen peroxide formation biological_process owl:Class GO:0060790 biolink:NamedThing tooth placode formation The developmental process in which the tooth placode forms. A tooth placode is a thickening of the ectoderm that will give rise to the tooth bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:21:47Z biological_process owl:Class GO:0006836 biolink:NamedThing neurotransmitter transport The directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. tmpzr1t_l9r_go_relaxed.owl sodium:neurotransmitter transport biological_process owl:Class GO:0060831 biolink:NamedThing smoothened signaling pathway involved in dorsal/ventral neural tube patterning The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube. tmpzr1t_l9r_go_relaxed.owl hh signaling pathway involved in dorsal/ventral neural tube patterning|smoothened signalling pathway involved in dorsal/ventral neural tube patterning|hedgehog signaling pathway involved in dorsal/ventral neural tube patterning dph 2009-08-11T02:12:58Z biological_process owl:Class GO:0021904 biolink:NamedThing dorsal/ventral neural tube patterning The process in which the neural tube is regionalized in the dorsoventral axis. tmpzr1t_l9r_go_relaxed.owl dorsoventral neural tube patterning|dorsal-ventral neural tube patterning biological_process owl:Class GO:0006766 biolink:NamedThing vitamin metabolic process The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems. tmpzr1t_l9r_go_relaxed.owl vitamin metabolism biological_process owl:Class GO:0120177 biolink:NamedThing negative regulation of torso signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the torso signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-06-07T16:58:08Z biological_process owl:Class GO:0008293 biolink:NamedThing torso signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to torso (a receptor tyrosine kinase) on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl torso signalling pathway biological_process owl:Class GO:0005577 biolink:NamedThing fibrinogen complex A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds. tmpzr1t_l9r_go_relaxed.owl fibrinogen|fibrinogen alpha chain|fibrinogen beta chain|fibrinogen gamma chain cellular_component owl:Class GO:0005615 biolink:NamedThing extracellular space That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. tmpzr1t_l9r_go_relaxed.owl intercellular space NIF_Subcellular:sao1425028079 Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism that are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term. cellular_component owl:Class GO:0034372 biolink:NamedThing very-low-density lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl VLDL remodeling|IDL formation|intermediate-density lipoprotein particle formation biological_process owl:Class GO:0075224 biolink:NamedThing positive regulation of sporangium germination Any process that activates, maintains or increases the frequency, rate or extent of sporangium germination. tmpzr1t_l9r_go_relaxed.owl positive regulation of sporangium germination on or near host biological_process owl:Class GO:0007217 biolink:NamedThing tachykinin receptor signaling pathway The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl tachykinin signalling pathway biological_process owl:Class GO:0097199 biolink:NamedThing cysteine-type endopeptidase activity involved in apoptotic signaling pathway Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl activator caspase activity|initiator caspase activity|cysteine-type endopeptidase activity involved in apoptotic signalling pathway|apical caspase activity Examples of gene products that may be annotated to this term include CASP2, CASP8, CASP9, and CASP10, also called initiator (or apical, or activator) caspases. pr 2011-12-12T01:43:00Z molecular_function owl:Class GO:1903761 biolink:NamedThing negative regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl negative regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|negative regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|down regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|down regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|down-regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|negative regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|inhibition of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|inhibition of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|downregulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|down regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|downregulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|down-regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|negative regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|downregulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|downregulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|down regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|downregulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|inhibition of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|down regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|inhibition of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|inhibition of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization|down-regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|down-regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential|down-regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential rl 2014-12-19T12:02:09Z biological_process owl:Class GO:1902282 biolink:NamedThing voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a ventricular cardiomyocyte contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential|voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential|voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential|voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential rl 2013-07-05T20:12:22Z molecular_function owl:Class GO:0000027 biolink:NamedThing ribosomal large subunit assembly The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl 50S ribosomal subunit assembly|60S ribosomal subunit assembly biological_process owl:Class GO:0042273 biolink:NamedThing ribosomal large subunit biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis. tmpzr1t_l9r_go_relaxed.owl ribosomal large subunit biogenesis and assembly biological_process owl:Class GO:1901406 biolink:NamedThing positive regulation of tetrapyrrole catabolic process Any process that activates or increases the frequency, rate or extent of tetrapyrrole catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of tetrapyrrole catabolic process|activation of tetrapyrrole breakdown|positive regulation of tetrapyrrole breakdown|activation of tetrapyrrole catabolic process|upregulation of tetrapyrrole breakdown|activation of tetrapyrrole catabolism|up-regulation of tetrapyrrole degradation|activation of tetrapyrrole degradation|up-regulation of tetrapyrrole breakdown|upregulation of tetrapyrrole catabolism|up regulation of tetrapyrrole degradation|up-regulation of tetrapyrrole catabolism|upregulation of tetrapyrrole degradation|up regulation of tetrapyrrole breakdown|positive regulation of tetrapyrrole catabolism|upregulation of tetrapyrrole catabolic process|up regulation of tetrapyrrole catabolism|up-regulation of tetrapyrrole catabolic process|positive regulation of tetrapyrrole degradation tt 2012-10-01T14:39:40Z biological_process owl:Class GO:0033015 biolink:NamedThing tetrapyrrole catabolic process The chemical reactions and pathways leading to the breakdown of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. tmpzr1t_l9r_go_relaxed.owl tetrapyrrole catabolism|tetrapyrrole degradation|tetrapyrrole breakdown biological_process owl:Class GO:2001017 biolink:NamedThing regulation of retrograde axon cargo transport Any process that modulates the frequency, rate or extent of retrograde axon cargo transport. tmpzr1t_l9r_go_relaxed.owl regulation of retrograde axonal transport kmv 2011-08-11T09:44:42Z biological_process owl:Class GO:0021625 biolink:NamedThing oculomotor nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the oculomotor nerve to attain its fully functional state. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle. tmpzr1t_l9r_go_relaxed.owl CN III maturation biological_process owl:Class GO:0021557 biolink:NamedThing oculomotor nerve development The process whose specific outcome is the progression of the oculomotor nerve over time, from its formation to the mature structure. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle. tmpzr1t_l9r_go_relaxed.owl cranial nerve III development|CN III development|cranial nerve 3 development biological_process owl:Class GO:0032724 biolink:NamedThing positive regulation of fractalkine production Any process that activates or increases the frequency, rate, or extent of fractalkine production. tmpzr1t_l9r_go_relaxed.owl upregulation of fractalkine production|up regulation of fractalkine production|up-regulation of fractalkine production|activation of fractalkine production|stimulation of fractalkine production biological_process owl:Class GO:0032603 biolink:NamedThing fractalkine production The appearance of fractalkine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl ABCD-3 production|CX3CL1 production|fractalkine metabolic process|fractalkine biosynthetic process|neurotactin production https://github.com/geneontology/go-ontology/issues/19254 GO:0050754|GO:0050756|GO:0050751 biological_process owl:Class GO:1902884 biolink:NamedThing positive regulation of response to oxidative stress Any process that activates or increases the frequency, rate or extent of response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to oxidative stress|up regulation of response to oxidative stress|activation of response to oxidative stress|upregulation of response to oxidative stress kmv 2014-04-03T20:30:47Z biological_process owl:Class GO:0006979 biolink:NamedThing response to oxidative stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902020 biolink:NamedThing negative regulation of cilium-dependent cell motility Any process that stops, prevents or reduces the frequency, rate or extent of cilium-dependent cell motility. tmpzr1t_l9r_go_relaxed.owl downregulation of ciliary cell motility|down-regulation of ciliary cell motility|negative regulation of cilium cell motility|inhibition of ciliary cell motility|negative regulation of ciliary cell motility|down regulation of ciliary cell motility jl 2013-03-27T14:42:42Z biological_process owl:Class GO:0070806 biolink:NamedThing negative regulation of phialide development Any process that stops, prevents, or reduces the frequency, rate or extent of phialide development, a process that leads to the formation of phialides. Phialides are specialized cells that bud from the ends of metulae on the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:47:16Z biological_process owl:Class GO:0070790 biolink:NamedThing phialide development The process whose specific outcome is the progression of phialides over time, from its formation to the mature structure. Phialides are specialized cells that bud from the ends of metulae on the conidiophore tip. Chains of conidia, or asexual spores, develop from the phialide tips. tmpzr1t_l9r_go_relaxed.owl development of secondary sterigmata mah 2009-07-08T02:32:30Z biological_process owl:Class GO:0061117 biolink:NamedThing negative regulation of heart growth Any process that decreases the rate or extent of heart growth. Heart growth is the increase in size or mass of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T07:31:28Z biological_process owl:Class GO:1900887 biolink:NamedThing regulation of pentadecane biosynthetic process Any process that modulates the frequency, rate or extent of pentadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of pentadecane synthesis|regulation of pentadecane biosynthesis|regulation of pentadecane formation|regulation of pentadecane anabolism tt 2012-06-13T03:03:32Z biological_process owl:Class GO:1900634 biolink:NamedThing pentadecane biosynthetic process The chemical reactions and pathways resulting in the formation of pentadecane. tmpzr1t_l9r_go_relaxed.owl pentadecane anabolism|pentadecane biosynthesis|pentadecane formation|pentadecane synthesis tt 2012-05-21T06:51:57Z biological_process owl:Class GO:1902031 biolink:NamedThing regulation of NADP metabolic process Any process that modulates the frequency, rate or extent of NADP metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of NADP (reduced) metabolism|regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolic process|regulation of NADP (oxidized) metabolism|regulation of NADPH metabolism|regulation of reduced NADP metabolic process|regulation of oxidized NADP metabolic process|regulation of NADP metabolism|regulation of reduced NADP metabolism|regulation of reduced nicotinamide adenine dinucleotide phosphate metabolism|regulation of reduced nicotinamide adenine dinucleotide phosphate metabolic process|regulation of oxidized NADP metabolism|regulation of nicotinamide adenine dinucleotide phosphate metabolic process|regulation of NADPH metabolic process|regulation of NADP (oxidized) metabolic process|regulation of NADP (reduced) metabolic process|regulation of nicotinamide adenine dinucleotide phosphate metabolism|regulation of NAD phosphorylation and dephosphorylation|regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolism jl 2013-03-28T20:21:48Z biological_process owl:Class GO:0021704 biolink:NamedThing locus ceruleus morphogenesis The process in which the anatomical structure of the locus ceruleus is generated and organized. In mice, the locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090018 biolink:NamedThing posterior neural plate formation The formation of posterior end of the flat, thickened layer of ectodermal cells known as the neural plate. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T11:32:08Z biological_process owl:Class GO:0021990 biolink:NamedThing neural plate formation The formation of the flat, thickened layer of ectodermal cells known as the neural plate. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032901 biolink:NamedThing positive regulation of neurotrophin production Any process that activates or increases the frequency, rate, or extent of production of a neurotrophin. tmpzr1t_l9r_go_relaxed.owl up regulation of neurotrophin production|up-regulation of neurotrophin production|activation of neurotrophin production|stimulation of neurotrophin production|upregulation of neurotrophin production biological_process owl:Class GO:0097381 biolink:NamedThing photoreceptor disc membrane Stack of disc membranes located inside a photoreceptor outer segment, and containing densely packed molecules of photoreceptor proteins that traverse the lipid bilayer. Disc membranes arise as evaginations of the ciliary membrane during the development of the outer segment and may or may not remain contiguous with the ciliary membrane. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-05T11:01:22Z cellular_component owl:Class GO:0001750 biolink:NamedThing photoreceptor outer segment The outer segment of a vertebrate photoreceptor that contains a stack of membrane discs embedded with photoreceptor proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900688 biolink:NamedThing positive regulation of gerfelin biosynthetic process Any process that activates or increases the frequency, rate or extent of gerfelin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of gerfelin biosynthetic process|activation of gerfelin formation|up regulation of gerfelin formation|up regulation of gerfelin anabolism|upregulation of gerfelin biosynthetic process|upregulation of gerfelin biosynthesis|up-regulation of gerfelin synthesis|up-regulation of gerfelin biosynthesis|positive regulation of gerfelin biosynthesis|upregulation of gerfelin formation|activation of gerfelin synthesis|positive regulation of gerfelin formation|activation of gerfelin biosynthetic process|activation of gerfelin biosynthesis|up-regulation of gerfelin biosynthetic process|up regulation of gerfelin biosynthesis|up-regulation of gerfelin formation|up-regulation of gerfelin anabolism|positive regulation of gerfelin synthesis|upregulation of gerfelin synthesis|positive regulation of gerfelin anabolism|upregulation of gerfelin anabolism|activation of gerfelin anabolism|up regulation of gerfelin synthesis di 2012-05-22T04:50:12Z biological_process owl:Class GO:1900578 biolink:NamedThing gerfelin biosynthetic process The chemical reactions and pathways resulting in the formation of gerfelin. tmpzr1t_l9r_go_relaxed.owl gerfelin biosynthesis|gerfelin synthesis|gerfelin formation|gerfelin anabolism di 2012-05-15T06:42:47Z biological_process owl:Class GO:0070263 biolink:NamedThing external side of fungal-type cell wall The side of the fungal-type cell wall that is opposite to the side that faces the cell and its contents. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009277 biolink:NamedThing fungal-type cell wall A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of extensively cross-linked glycoproteins and carbohydrates. The glycoproteins may be modified with N- or O-linked carbohydrates, or glycosylphosphatidylinositol (GPI) anchors; the polysaccharides are primarily branched glucans, including beta-linked and alpha-linked glucans, and may also include chitin and other carbohydrate polymers, but not cellulose or pectin. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure. tmpzr1t_l9r_go_relaxed.owl beta-glucan-containing cell wall|chitin- and beta-glucan-containing cell wall|chitin-containing cell wall cellular_component owl:Class GO:0009840 biolink:NamedThing chloroplastic endopeptidase Clp complex A Clp endopeptidase complex located in the chloroplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009570 biolink:NamedThing chloroplast stroma The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900163 biolink:NamedThing positive regulation of phospholipid scramblase activity Any process that activates or increases the frequency, rate or extent of phospholipid scramblase activity. tmpzr1t_l9r_go_relaxed.owl activation of phospholipid scramblase activity|up regulation of phospholipid scramblase activity|up-regulation of phospholipid scramblase activity|upregulation of phospholipid scramblase activity rph 2012-03-08T10:57:26Z biological_process owl:Class GO:0001936 biolink:NamedThing regulation of endothelial cell proliferation Any process that modulates the frequency, rate, or extent of endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001935 biolink:NamedThing endothelial cell proliferation The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005518 biolink:NamedThing collagen binding Binding to collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000466 biolink:NamedThing maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903803 biolink:NamedThing L-glutamine import across plasma membrane The directed movement of L-glutamine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-glutamine import into cell|L-glutamine import|L-glutamine uptake bf 2012-05-11T10:46:21Z GO:0036229 biological_process owl:Class GO:0090022 biolink:NamedThing regulation of neutrophil chemotaxis Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:09:34Z biological_process owl:Class GO:0009527 biolink:NamedThing plastid outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060508 biolink:NamedThing lung basal cell differentiation The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features of a mature basal cell found in the lung. Differentiation includes the processes involved in commitment of a cell to a specific fate. A basal cell is an epithelial stem cell. tmpzr1t_l9r_go_relaxed.owl pulmonary basal cell differentiation biological_process owl:Class GO:0060428 biolink:NamedThing lung epithelium development The biological process whose specific outcome is the progression of the lung epithelium from an initial condition to its mature state. This process begins with the formation of lung epithelium and ends with the mature structure. The lung epithelium is the specialized epithelium that lines the inside of the lung. tmpzr1t_l9r_go_relaxed.owl pulmonary epithelium development biological_process owl:Class GO:0045893 biolink:NamedThing positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl activation of gene-specific transcription|positive regulation of gene-specific transcription|upregulation of gene-specific transcription|stimulation of transcription, DNA-dependent|up regulation of transcription, DNA-dependent|up-regulation of transcription, DNA-dependent|up-regulation of gene-specific transcription|up regulation of gene-specific transcription|transcription activator activity|activation of transcription, DNA-dependent|upregulation of transcription, DNA-dependent|positive regulation of cellular transcription, DNA-dependent|stimulation of gene-specific transcription|positive regulation of transcription, DNA-dependent GO:0043193|GO:0045941|GO:0061020 biological_process owl:Class GO:0042025 biolink:NamedThing host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl GO:0033649 cellular_component owl:Class GO:0031054 biolink:NamedThing pre-miRNA processing Any process involved in the conversion of a pre-microRNA transcript into a mature microRNA molecule. tmpzr1t_l9r_go_relaxed.owl pre-microRNA processing biological_process owl:Class GO:0099575 biolink:NamedThing regulation of protein catabolic process at presynapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating a catabolic process occurring at a presynapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0002284 biolink:NamedThing myeloid dendritic cell differentiation involved in immune response The process in which an immature myeloid dendritic cell acquires the specialized features of a mature myeloid dendritic cell as part of an immune response. tmpzr1t_l9r_go_relaxed.owl myeloid dendritic cell differentiation during immune response biological_process owl:Class GO:0010467 biolink:NamedThing gene expression The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Gene_expression biological_process owl:Class GO:2000249 biolink:NamedThing regulation of actin cytoskeleton reorganization Any process that modulates the frequency, rate or extent of actin cytoskeleton reorganization. tmpzr1t_l9r_go_relaxed.owl regulation of actin cytoskeleton remodeling|regulation of actin cytoskeleton reorganisation vk 2010-11-11T01:25:26Z biological_process owl:Class GO:0031532 biolink:NamedThing actin cytoskeleton reorganization A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl actin cytoskeleton remodeling|actin cytoskeleton reorganisation GO:0007012 biological_process owl:Class GO:0071607 biolink:NamedThing macrophage inflammatory protein-1 gamma production The appearance of macrophage inflammatory protein-1 gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL9 production|MIP-1g production|chemokine (C-C motif) ligand 9 production mah 2010-02-05T04:19:52Z biological_process owl:Class GO:0032579 biolink:NamedThing apical lamina of hyaline layer A fibrous network that is part of the hyalin layer extracellular matrix. The apical lamina is thought to be principally composed of the glycoproteins fibropellins. This matrix has been found in echinoderms. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033166 biolink:NamedThing hyaline layer A multilayered extraembryonic matrix that functions as a substrate for cell adhesion through early development. It is thought to protect and lubricate the embryo, stabilize the blastomeres during morphogenesis, and regulate nutrient intake. The major constituent of the hyaline layer is the protein hyalin. This matrix has been found in echinoderms. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034750 biolink:NamedThing Scrib-APC-beta-catenin complex A protein complex that contains the Scribble protein (a cell polarity determinant), the tumor suppressor protein adenomatous polyposis coli (APC), and beta-catenin; may be involved in the control of cell proliferation. tmpzr1t_l9r_go_relaxed.owl hScrib-APC-beta-catenin complex Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0048752 biolink:NamedThing semicircular canal morphogenesis The process in which the anatomical structures of the semicircular canals are generated and organized. tmpzr1t_l9r_go_relaxed.owl embryonic semicircular canal morphogenesis biological_process owl:Class GO:0015423 biolink:NamedThing ABC-type maltose transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + maltose(out) = ADP + phosphate + maltose(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent maltose transmembrane transporter activity|maltose-transporting ATPase activity|maltose ABC transporter|maltooligosaccharide-importing ATPase activity|ABC-type maltose transporter|ATPase-coupled maltose transmembrane transporter activity EC:7.5.2.1|RHEA:22132|MetaCyc:3.6.3.19-RXN molecular_function owl:Class GO:0060385 biolink:NamedThing axonogenesis involved in innervation The neurite development process that generates a long process of a neuron, as it invades a target tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072084 biolink:NamedThing specification of distal tubule identity The process in which the distal tubule of the kidney nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:47:53Z biological_process owl:Class GO:0072156 biolink:NamedThing distal tubule morphogenesis The process in which the anatomical structures of a distal tubule are generated and organized. The distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:32:03Z biological_process owl:Class GO:0031601 biolink:NamedThing nuclear proteasome core complex The core complex of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031595 biolink:NamedThing nuclear proteasome complex A proteasome found in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072578 biolink:NamedThing neurotransmitter-gated ion channel clustering The receptor clustering process in which neurotransmitter-gated ion channels are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-03T01:45:48Z biological_process owl:Class GO:0050808 biolink:NamedThing synapse organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell). tmpzr1t_l9r_go_relaxed.owl synapse organisation|synapse organization and biogenesis|synapse development|synapse morphogenesis biological_process owl:Class GO:2000043 biolink:NamedThing regulation of cardiac cell fate specification Any process that modulates the frequency, rate or extent of cardiac cell fate specification. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-19T09:01:04Z biological_process owl:Class GO:0060912 biolink:NamedThing cardiac cell fate specification The process involved in the specification of cardiac cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl cardiocyte cell fate specification dph 2009-09-17T08:53:21Z biological_process owl:Class GO:0070779 biolink:NamedThing D-aspartate import across plasma membrane The directed import of D-aspartate from the extracellular region across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl D-aspartate import into cell|D-aspartate import|D-aspartate uptake mah 2009-07-02T01:57:00Z GO:0140016 biological_process owl:Class GO:1905635 biolink:NamedThing FACT complex assembly The aggregation, arrangement and bonding together of a set of components to form a FACT complex. tmpzr1t_l9r_go_relaxed.owl Facilitates chromatin transcription complex assembly|FACT complex formation|Facilitates chromatin transcription complex formation pga 2016-11-02T15:06:03Z biological_process owl:Class GO:0060433 biolink:NamedThing bronchus development The biological process whose specific outcome is the progression of a bronchus from an initial condition to its mature state. This process begins with the formation of the bronchus and ends with the mature structure. The bronchus is the portion of the airway that connects to the lungs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060541 biolink:NamedThing respiratory system development The progression of the respiratory system over time from its formation to its mature structure. The respiratory system carries out respiratory gaseous exchange. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:55:42Z biological_process owl:Class GO:0000308 biolink:NamedThing cytoplasmic cyclin-dependent protein kinase holoenzyme complex Cyclin-dependent protein kinase (CDK) complex found in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl CDK holoenzyme cellular_component owl:Class GO:0008379 biolink:NamedThing thioredoxin peroxidase activity Catalysis of the reaction: thioredoxin + hydrogen peroxide = thioredoxin disulfide + H2O. tmpzr1t_l9r_go_relaxed.owl TrxPx activity|TPx activity|thiol peroxidase activity MetaCyc:RXN0-267|Reactome:R-HSA-3322995|Reactome:R-HSA-2161612|RHEA:63528|Reactome:R-HSA-3697894|Reactome:R-HSA-3697882|Reactome:R-HSA-3341343 GO:0009031 molecular_function owl:Class GO:0016560 biolink:NamedThing protein import into peroxisome matrix, docking The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the peroxisomal membrane. tmpzr1t_l9r_go_relaxed.owl protein docking during protein import into peroxisome matrix|protein transport into peroxisome matrix, docking|peroxisome receptor docking|peroxisome matrix protein import, docking|protein docking during peroxisome matrix protein import|protein docking during protein transport into peroxisome matrix biological_process owl:Class GO:0051934 biolink:NamedThing catecholamine uptake involved in synaptic transmission The uptake of catecholamine neurotransmitters by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl catecholamine neurotransmitter import into glial cell|catecholamine neurotransmitter import into neuron|catecholamine uptake during transmission of nerve impulse|catecholamine neurotransmitter reuptake|catecholamine reuptake during transmission of nerve impulse|catecholamine neurotransmitter recycling biological_process owl:Class GO:0030894 biolink:NamedThing replisome A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins. tmpzr1t_l9r_go_relaxed.owl DNA synthesome complex|RC complex|replication-competent complex Wikipedia:Replisome cellular_component owl:Class GO:1990833 biolink:NamedThing clathrin-uncoating ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the removal of clathrin from vesicle membranes, coupled to the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-21T18:01:42Z molecular_function owl:Class GO:0072318 biolink:NamedThing clathrin coat disassembly The disaggregation of a clathrin coat into its constituent components; results in stripping or removing the clathrin coat from clathrin-coated vesicles (CCV) before fusing with their targets. CVVs transport cargo from plasma membrane and trans-Golgi to the endosomal system. tmpzr1t_l9r_go_relaxed.owl clathrin-coat uncoating|clathrin-coat disassembly|clathrin-coated vesicle uncoating mah 2010-10-26T12:03:37Z biological_process owl:Class GO:0010842 biolink:NamedThing retina layer formation The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia. tmpzr1t_l9r_go_relaxed.owl retinal layer formation|retinal lamination biological_process owl:Class GO:0009908 biolink:NamedThing flower development The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. tmpzr1t_l9r_go_relaxed.owl GO:0048409 biological_process owl:Class GO:0035886 biolink:NamedThing vascular associated smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a vascular smooth muscle cell. tmpzr1t_l9r_go_relaxed.owl VSMC differentiation|vascular smooth muscle cell differentiation bf 2011-06-08T11:23:52Z biological_process owl:Class GO:1990702 biolink:NamedThing integral component of Golgi cis cisterna membrane The component of the Golgi cis membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of cis-Golgi cisterna membrane bhm 2015-03-16T16:03:21Z cellular_component owl:Class GO:0086005 biolink:NamedThing ventricular cardiac muscle cell action potential An action potential that occurs in a ventricular cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:59:36Z biological_process owl:Class GO:0140256 biolink:NamedThing negative regulation of cellular response to phosphate starvation Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to phosphate starvation. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-07T17:11:42Z biological_process owl:Class GO:0051885 biolink:NamedThing positive regulation of timing of anagen Any process that activates or increases the frequency, rate or extent of timing of anagen, the growth phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl upregulation of anagen|up-regulation of anagen|activation of anagen|positive regulation of anagen|stimulation of anagen|up regulation of anagen biological_process owl:Class GO:0042640 biolink:NamedThing anagen The growth phase of the hair cycle. Lasts, for example, about 3 to 6 years for human scalp hair. tmpzr1t_l9r_go_relaxed.owl hair growth Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0097723 biolink:NamedThing amoeboid sperm motility Any process involved in the controlled movement of an amoeboid sperm cell. tmpzr1t_l9r_go_relaxed.owl amoeboid sperm movement|ameboid sperm motility|ameboid sperm movement pr 2016-09-01T12:02:19Z biological_process owl:Class GO:0042531 biolink:NamedThing positive regulation of tyrosine phosphorylation of STAT protein Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl upregulation of tyrosine phosphorylation of Stat4 protein|up regulation of tyrosine phosphorylation of Stat1 protein|activation of tyrosine phosphorylation of Stat5 protein|activation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|stimulation of tyrosine phosphorylation of Stat1 protein|up regulation of tyrosine phosphorylation of STAT protein|upregulation of tyrosine phosphorylation of Stat3 protein|up-regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat2 protein|positive regulation of tyrosine phosphorylation of Stat6 protein|up regulation of tyrosine phosphorylation of Stat5 protein|upregulation of tyrosine phosphorylation of Stat6 protein|stimulation of tyrosine phosphorylation of Stat5 protein|up-regulation of tyrosine phosphorylation of Stat2 protein|up regulation of tyrosine phosphorylation of Stat4 protein|up-regulation of tyrosine phosphorylation of Stat3 protein|activation of tyrosine phosphorylation of Stat1 protein|activation of tyrosine phosphorylation of Stat7 protein|stimulation of tyrosine phosphorylation of Stat4 protein|stimulation of tyrosine phosphorylation of STAT protein|activation of tyrosine phosphorylation of Stat6 protein|up regulation of tyrosine phosphorylation of Stat2 protein|upregulation of tyrosine phosphorylation of Stat1 protein|up-regulation of tyrosine phosphorylation of Stat7 protein|up-regulation of tyrosine phosphorylation of Stat4 protein|upregulation of tyrosine phosphorylation of Stat2 protein|positive regulation of tyrosine phosphorylation of Stat1 protein|up-regulation of tyrosine phosphorylation of STAT protein|stimulation of tyrosine phosphorylation of Stat3 protein|stimulation of tyrosine phosphorylation of Stat7 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|activation of tyrosine phosphorylation of Stat2 protein|positive regulation of tyrosine phosphorylation of Stat7 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|stimulation of tyrosine phosphorylation of Stat6 protein|stimulation of tyrosine phosphorylation of Stat2 protein|upregulation of tyrosine phosphorylation of Stat5 protein|activation of tyrosine phosphorylation of STAT protein|up-regulation of tyrosine phosphorylation of Stat5 protein|upregulation of tyrosine phosphorylation of Stat7 protein|up-regulation of tyrosine phosphorylation of Stat6 protein|up regulation of tyrosine phosphorylation of Stat6 protein|up regulation of tyrosine phosphorylation of Stat3 protein|upregulation of tyrosine phosphorylation of STAT protein|activation of tyrosine phosphorylation of Stat4 protein|up regulation of tyrosine phosphorylation of Stat7 protein GO:0042526|GO:0042517|GO:0042520|GO:0042529|GO:0042511|GO:0042515|GO:0042523 biological_process owl:Class GO:0007260 biolink:NamedThing tyrosine phosphorylation of STAT protein The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl tyrosine phosphorylation of Stat1 protein|tyrosine phosphorylation of Stat6 protein|tyrosine phosphorylation of Stat5 protein|tyrosine phosphorylation of Stat7 protein|tyrosine phosphorylation of Stat3 protein|tyrosine phosphorylation of Stat4 protein|tyrosine phosphorylation of Stat2 protein GO:0042505|GO:0042502|GO:0042508|GO:0042506|GO:0042507|GO:0042504|GO:0042503 biological_process owl:Class GO:0006407 biolink:NamedThing rRNA export from nucleus The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins. tmpzr1t_l9r_go_relaxed.owl rRNA-nucleus export|rRNA transport from nucleus to cytoplasm|rRNA export out of nucleus|rRNA export from cell nucleus biological_process owl:Class GO:1902043 biolink:NamedThing positive regulation of extrinsic apoptotic signaling pathway via death domain receptors Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors. tmpzr1t_l9r_go_relaxed.owl up regulation of extrinsic apoptotic signaling pathway via death domain receptors|upregulation of death receptor-mediated apoptosis|up-regulation of extrinsic apoptotic signaling pathway via death domain receptors|positive regulation of death receptor-mediated apoptosis|activation of death receptor-mediated apoptosis|activation of extrinsic apoptotic signaling pathway via death domain receptors|up-regulation of death receptor-mediated apoptosis|upregulation of extrinsic apoptotic signaling pathway via death domain receptors|up regulation of death receptor-mediated apoptosis lb 2013-04-03T07:17:11Z biological_process owl:Class GO:0008625 biolink:NamedThing extrinsic apoptotic signaling pathway via death domain receptors A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with a ligand binding to a death domain receptor on the cell surface, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis via death receptors|death receptor-mediated apoptosis|induction of apoptosis via death domain receptors Gene products that may be annotated to this term include: 1) ligands such as FASL; 2) receptors such as FAS/CD95 (though care should be taken because FAS can also act as a non-apoptotic signal transducer); 3) signaling molecules such as FADD (FAS-associated protein with a death domain), cIAPs (cellular inhibitor of apoptosis proteins), c-FLIPs and caspases 8 and 10. Examples are TWEAK (TNF12) and FN14 (TNFRSF12A) (UniProt symbols O43508 and Q9NP84) in PMID:21525013. biological_process owl:Class GO:2000625 biolink:NamedThing regulation of miRNA catabolic process Any process that modulates the frequency, rate or extent of miRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of microRNA catabolic process dph 2011-04-18T03:46:35Z biological_process owl:Class GO:0010587 biolink:NamedThing miRNA catabolic process The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. tmpzr1t_l9r_go_relaxed.owl microRNA catabolic process biological_process owl:Class GO:0031236 biolink:NamedThing extrinsic component of periplasmic side of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its periplasmic surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to external side of plasma membrane, in periplasmic space|extrinsic to external leaflet of plasma membrane, in periplasmic space GO:0031238 cellular_component owl:Class GO:0007598 biolink:NamedThing blood coagulation, extrinsic pathway A protein activation cascade that contributes to blood coagulation and consists of the self-limited process linking exposure and activation of tissue factor to the activation of clotting factor X. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'blood coagulation, intrinsic pathway ; GO:0007597'. biological_process owl:Class GO:0005654 biolink:NamedThing nucleoplasm That part of the nuclear content other than the chromosomes or the nucleolus. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao661522542|Wikipedia:Nucleoplasm cellular_component owl:Class GO:0003341 biolink:NamedThing cilium movement The directed, self-propelled movement of a cilium. tmpzr1t_l9r_go_relaxed.owl ciliary motility|flagellar motility|microtubule-based flagellum movement|cilium beating|flagellar movement|flagellum movement Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2009-11-24T09:56:26Z GO:0036142 biological_process owl:Class GO:0036470 biolink:NamedThing tyrosine 3-monooxygenase activator activity Interacts with and increases tyrosine 3-monooxygenase (tyrosine hydroxylase) activity. tmpzr1t_l9r_go_relaxed.owl TH activator activity|tyrosine hydroxylase activator activity bf 2014-07-21T11:06:49Z molecular_function owl:Class GO:0007399 biolink:NamedThing nervous system development The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl pan-neural process biological_process owl:Class GO:0072119 biolink:NamedThing head kidney structural organization The process that contributes to the act of creating the structural organization of the head kidney. This process pertains to the physical shaping of a rudimentary structure. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney. tmpzr1t_l9r_go_relaxed.owl head kidney structural organisation mah 2010-02-22T11:22:12Z biological_process owl:Class GO:0072115 biolink:NamedThing head kidney morphogenesis The process in which the anatomical structures of the head kidney are generated and organized. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T11:13:37Z biological_process owl:Class GO:0090729 biolink:NamedThing toxin activity Interacting selectively with one or more biological molecules in another (target) organism, initiating pathogenesis (leading to an abnormal, generally detrimental state) in the target organism. The activity should refer to an evolved function of the active gene product, i.e. one that was selected for. Examples include the activity of botulinum toxin, and snake venom. tmpzr1t_l9r_go_relaxed.owl toxin receptor binding Wikipedia:Toxin tb 2016-12-19T15:23:27Z GO:0050827 molecular_function owl:Class GO:2000511 biolink:NamedThing regulation of granzyme A production Any process that modulates the frequency, rate or extent of granzyme A production. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:31:27Z biological_process owl:Class GO:0035746 biolink:NamedThing granzyme A production The appearance of granzyme A due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2011-03-17T02:39:11Z biological_process owl:Class GO:0016056 biolink:NamedThing rhodopsin mediated signaling pathway The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response. tmpzr1t_l9r_go_relaxed.owl rhodopsin signaling|rhodopsin mediated phototransduction|rhodopsin mediated signalling pathway GO:0009586 biological_process owl:Class GO:0007603 biolink:NamedThing phototransduction, visible light The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. tmpzr1t_l9r_go_relaxed.owl visual cascade|visual transduction biological_process owl:Class GO:0030323 biolink:NamedThing respiratory tube development The process whose specific outcome is the progression of the respiratory tube over time, from its formation to the mature structure. The respiratory tube is assumed to mean any tube in the respiratory tract. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000015 biolink:NamedThing regulation of determination of dorsal identity Any process that modulates the frequency, rate or extent of determination of dorsal identity. tmpzr1t_l9r_go_relaxed.owl regulation of determination of adaxial identity jl 2010-07-15T03:27:49Z biological_process owl:Class GO:0033024 biolink:NamedThing mast cell apoptotic process Any apoptotic process in a mast cell, a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. tmpzr1t_l9r_go_relaxed.owl apoptosis of mast cells|mast cell apoptosis biological_process owl:Class GO:1902113 biolink:NamedThing nucleotide phosphorylation involved in DNA repair Any nucleotide phosphorylation that is involved in DNA repair. tmpzr1t_l9r_go_relaxed.owl al 2013-05-13T08:56:02Z biological_process owl:Class GO:0072195 biolink:NamedThing kidney smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell in the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T02:07:52Z biological_process owl:Class GO:0110151 biolink:NamedThing positive regulation of biomineralization Any process that activates or increases the frequency, rate or extent of biomineralization, the formation and deposition of mineral crystals by living organisms. tmpzr1t_l9r_go_relaxed.owl positive regulation of mineralization|positive regulation of mineralisation|positive regulation of biomineral formation|positive regulation of biomineralisation kmv 2019-06-10T18:18:01Z biological_process owl:Class GO:0031848 biolink:NamedThing protection from non-homologous end joining at telomere A process that prevents non-homologous end joining at telomere, thereby ensuring that telomeres do not fuse. tmpzr1t_l9r_go_relaxed.owl protection from NHEJ-mediated telomere fusion biological_process owl:Class GO:1903888 biolink:NamedThing regulation of plant epidermal cell differentiation Any process that modulates the frequency, rate or extent of plant epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl tb 2015-02-06T22:29:38Z biological_process owl:Class GO:0016517 biolink:NamedThing interleukin-12 receptor activity Combining with interleukin-12 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-12 receptor activity|IL-12R molecular_function owl:Class GO:0035722 biolink:NamedThing interleukin-12-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-12 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-12-mediated signalling pathway|IL-12-mediated signaling pathway bf 2011-03-07T11:27:58Z biological_process owl:Class GO:1904446 biolink:NamedThing positive regulation of establishment of Sertoli cell barrier Any process that activates or increases the frequency, rate or extent of establishment of Sertoli cell barrier. tmpzr1t_l9r_go_relaxed.owl upregulation of establishment of BTB|activation of establishment of SCB|up regulation of establishment of blood-testis barrier|up-regulation of establishment of Sertoli cell barrier|positive regulation of establishment of BTB|up-regulation of establishment of blood-testis barrier|positive regulation of establishment of blood-testis barrier|activation of establishment of BTB|up-regulation of establishment of SCB|upregulation of establishment of blood-testis barrier|upregulation of establishment of Sertoli cell barrier|up regulation of establishment of Sertoli cell barrier|upregulation of establishment of SCB|up regulation of establishment of BTB|activation of establishment of Sertoli cell barrier|up regulation of establishment of SCB|activation of establishment of blood-testis barrier|positive regulation of establishment of SCB|up-regulation of establishment of BTB sl 2015-07-06T16:00:54Z biological_process owl:Class GO:0097368 biolink:NamedThing establishment of Sertoli cell barrier Establishment of a structure near the basement membrane in adjacent Sertoli cells of the seminiferous epithelium for maintaining spermatogenesis. The structure consists of tight junctions, basal ectoplasmic specializations, and desmosome-like junctions. tmpzr1t_l9r_go_relaxed.owl establishment of blood-testis barrier|establishment of SCB|establishment of BTB pr 2012-08-02T17:05:55Z biological_process owl:Class GO:0062169 biolink:NamedThing regulation of plus-end directed microtubule sliding Any process that mediates the frequency, rate, or extent of plus-end directed microtubule sliding. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-12T18:01:32Z biological_process owl:Class GO:0031535 biolink:NamedThing plus-end directed microtubule sliding The movement of one microtubule along another microtubule, where the motion is directed towards the plus ends of the microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061169 biolink:NamedThing positive regulation of hair placode formation Any process that increases the rate, frequency, or extent of hair follicle placode formation, the developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-25T01:08:50Z biological_process owl:Class GO:0005635 biolink:NamedThing nuclear envelope The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nuclear_envelope GO:0005636 cellular_component owl:Class GO:1903913 biolink:NamedThing regulation of fusion of virus membrane with host plasma membrane Any process that modulates the frequency, rate or extent of fusion of virus membrane with host plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of viral entry into host cell via membrane fusion with the plasma membrane|regulation of viral envelope fusion with host plasma membrane|regulation of viral envelope fusion|regulation of viral-cell fusion molecule activity|regulation of viral envelope fusion with host membrane|regulation of viral envelope fusion with host cell membrane|regulation of viral penetration via membrane fusion als 2015-02-09T11:13:19Z biological_process owl:Class GO:0005889 biolink:NamedThing potassium:proton exchanging ATPase complex A protein complex that possesses hydrogen:potassium-exchanging ATPase activity; characterized in animal cells, where it maintains ionic gradients of K+ at the expense of ATP hydrolysis; The complex contains two obligatory subunits, the catalytic alpha subunit and a glycosylated beta subunit; two additional subunits, gamma and channel-inducing factor (CHIF), may also be present. tmpzr1t_l9r_go_relaxed.owl proton pump|hydrogen/potassium-exchanging ATPase complex|hydrogen:potassium-exchanging ATPase complex cellular_component owl:Class GO:0003381 biolink:NamedThing epithelial cell morphogenesis involved in gastrulation The change in form that occurs when an epithelial cell progresses from it initial formation to its mature state, contributing to the process of gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T07:18:53Z biological_process owl:Class GO:0035700 biolink:NamedThing astrocyte chemotaxis The directed movement of an astrocyte guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl bf 2011-02-28T03:17:52Z biological_process owl:Class GO:0072264 biolink:NamedThing metanephric glomerular endothelium development The process whose specific outcome is the progression of the metanephric glomerular endothelium over time, from its formation to the mature structure. The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:42:26Z biological_process owl:Class GO:0072239 biolink:NamedThing metanephric glomerulus vasculature development The biological process whose specific outcome is the progression of a metanephric glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the metanephric glomerulus vasculature and ends with the mature structure. The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus. tmpzr1t_l9r_go_relaxed.owl glomerulus capillary development mah 2010-03-18T03:50:29Z biological_process owl:Class GO:0001844 biolink:NamedThing protein insertion into mitochondrial membrane involved in apoptotic signaling pathway The process in which a protein is incorporated into a mitochondrial membrane as the initial phase of the mitochondrial membrane permeabilization that takes place in the apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl protein insertion into mitochondrial membrane involved in induction of apoptosis|protein insertion into mitochondrial membrane during induction of apoptosis|protein insertion into mitochondrion membrane during induction of apoptosis|insertion of proteins into mitochondrial membranes during the induction of apoptosis Note that this term is intended to cover the insertion of pro-apoptotic proteins such as Bax or its homologs into mitochondrial membranes which occurs as an early step in the apoptotic program. biological_process owl:Class GO:0071921 biolink:NamedThing cohesin loading The protein localization to chromatin by which a cohesin ring complex is topologically linked to DNA. tmpzr1t_l9r_go_relaxed.owl cohesin localisation to chromatin|cohesin association with chromatin|cohesin localization to chromatin mah 2010-09-28T11:07:26Z biological_process owl:Class GO:0045039 biolink:NamedThing protein insertion into mitochondrial inner membrane The processes mediating the insertion of proteins into the mitochondrial inner membrane. Mitochondrial inner membrane proteins can get inserted from the cytosol, by crossing the outer membrane and being guided by an inner membrane translocase complex into their final destination in the inner membrane. Some proteins present in the intermembrane space can get inserted into the inner mitochondrial membrane. Finally, some proteins are inserted into the inner membrane from the matrix side of the membrane. tmpzr1t_l9r_go_relaxed.owl protein import into mitochondrial inner membrane|mitochondrial inner membrane protein import|protein transport into mitochondrial inner membrane https://github.com/geneontology/go-ontology/issues/15800 biological_process owl:Class GO:0006626 biolink:NamedThing protein targeting to mitochondrion The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. tmpzr1t_l9r_go_relaxed.owl protein-mitochondrial targeting|protein targeting to mitochondria|protein import into mitochondrion|mitochondrial translocation|mitochondrial protein import GO:0043681 biological_process owl:Class GO:0035688 biolink:NamedThing T-helper 1 cell diapedesis The passage of a T-helper 1 cell between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation. A T-helper 1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma. tmpzr1t_l9r_go_relaxed.owl Th1 cell diapedesis bf 2011-02-24T10:12:11Z biological_process owl:Class GO:0035687 biolink:NamedThing T-helper 1 cell extravasation The migration of a T-helper 1 cell from the blood vessels into the surrounding tissue. A T-helper 1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma. tmpzr1t_l9r_go_relaxed.owl Th1 cell extravasation bf 2011-02-24T10:10:00Z biological_process owl:Class GO:1905900 biolink:NamedThing negative regulation of smooth muscle tissue development Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle tissue development. tmpzr1t_l9r_go_relaxed.owl inhibition of smooth muscle tissue development|down regulation of smooth muscle tissue development|down-regulation of smooth muscle tissue development|downregulation of smooth muscle tissue development bhm 2017-02-01T14:31:24Z biological_process owl:Class GO:0048745 biolink:NamedThing smooth muscle tissue development The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016239 biolink:NamedThing positive regulation of macroautophagy Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation. tmpzr1t_l9r_go_relaxed.owl up-regulation of macroautophagy|activation of macroautophagy|positive regulation of starvation-induced autophagy|stimulation of macroautophagy|up regulation of macroautophagy|upregulation of macroautophagy biological_process owl:Class GO:0016255 biolink:NamedThing attachment of GPI anchor to protein A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045762 biolink:NamedThing positive regulation of adenylate cyclase activity Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of adenylyl cyclase activity|adenylate cyclase activator|up-regulation of adenylate cyclase activity|upregulation of adenylate cyclase activity|up regulation of adenylate cyclase activity|stimulation of adenylate cyclase activity biological_process owl:Class GO:0021877 biolink:NamedThing forebrain neuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron that resides in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904574 biolink:NamedThing negative regulation of selenocysteine insertion sequence binding Any process that stops, prevents or reduces the frequency, rate or extent of selenocysteine insertion sequence binding. tmpzr1t_l9r_go_relaxed.owl inhibition of SECIS binding|down-regulation of SECIS binding|down regulation of SECIS binding|downregulation of SECIS binding|negative regulation of SECIS binding|inhibition of selenocysteine insertion sequence binding|down regulation of selenocysteine insertion sequence binding|downregulation of selenocysteine insertion sequence binding|down-regulation of selenocysteine insertion sequence binding sl 2015-08-19T17:51:15Z biological_process owl:Class GO:0090108 biolink:NamedThing positive regulation of high-density lipoprotein particle assembly Any process that increases the frequency, rate, or extent of high-density lipoprotein particle assembly. High-density lipoprotein particle assembly is the aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-25T10:50:18Z biological_process owl:Class GO:0034380 biolink:NamedThing high-density lipoprotein particle assembly The non-covalent aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl HDL assembly biological_process owl:Class GO:0035017 biolink:NamedThing cuticle pattern formation The regionalization process that gives rise to the patterns of cell differentiation in the cuticle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042335 biolink:NamedThing cuticle development The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. tmpzr1t_l9r_go_relaxed.owl cuticle formation|cuticle synthesis|cuticle anabolism|cuticle biosynthesis|cuticle biosynthetic process biological_process owl:Class GO:1905260 biolink:NamedThing positive regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to nitrosative stress. tmpzr1t_l9r_go_relaxed.owl up regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|up-regulation of nitrosative stress-induced apoptosis|activation of intrinsic apoptotic signaling pathway in response to nitrosative stress|upregulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|up regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|up-regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|positive regulation of nitrosative stress-induced apoptosis|up-regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|up regulation of nitrosative stress-induced apoptosis|upregulation of nitrosative stress-induced intrinsic apoptotic signaling pathway|activation of nitrosative stress-induced apoptosis|upregulation of nitrosative stress-induced apoptosis|activation of nitrosative stress-induced intrinsic apoptotic signaling pathway|positive regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress bf 2016-06-13T17:05:15Z biological_process owl:Class GO:2000334 biolink:NamedThing positive regulation of blood microparticle formation Any process that activates or increases the frequency, rate or extent of blood microparticle formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of microparticle generation|positive regulation of microparticle release mah 2011-01-31T11:18:23Z biological_process owl:Class GO:0070816 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain The process of introducing a phosphate group on to an amino acid residue in the C-terminal domain of RNA polymerase II. Typically, this occurs during the transcription cycle and results in production of an RNA polymerase II enzyme where the carboxy-terminal domain (CTD) of the largest subunit is extensively phosphorylated, often referred to as hyperphosphorylated or the II(0) form. Specific types of phosphorylation within the CTD are usually associated with specific regions of genes, though there are exceptions. The phosphorylation state regulates the association of specific complexes such as the capping enzyme or 3'-RNA processing machinery to the elongating RNA polymerase complex. tmpzr1t_l9r_go_relaxed.owl generation of II(0) form of RNA polymerase II|CTD domain phosphorylation of RNA polymerase II|hyperphosphorylation of RNA polymerase II C-terminal domain|generation of hyperphosphorylated CTD of RNA polymerase II mah 2009-07-13T04:01:19Z GO:0016245 biological_process owl:Class GO:0048488 biolink:NamedThing synaptic vesicle endocytosis A vesicle-mediated transport process, in which the synaptic vesicle membrane constituents are retrieved from the presynaptic membrane on the axon terminal after neurotransmitter secretion by exocytosis. Synaptic vesicle endocytosis can occur via clathrin-dependent and clathrin-independent mechanisms. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle retrieval https://github.com/geneontology/synapse/issues/230 GO:0008099 biological_process owl:Class GO:1902202 biolink:NamedThing regulation of hepatocyte growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of hepatocyte growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of HGF receptor signalling pathway|regulation of Met signaling pathway|regulation of HGF receptor signaling pathway lb 2013-06-10T13:20:45Z biological_process owl:Class GO:0048012 biolink:NamedThing hepatocyte growth factor receptor signaling pathway The series of molecular signals generated as a consequence of the hepatocyte growth factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl Met signaling pathway|HGF receptor signalling pathway|HGF receptor signaling pathway biological_process owl:Class GO:0002791 biolink:NamedThing regulation of peptide secretion Any process that modulates the frequency, rate, or extent of peptide secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009530 biolink:NamedThing primary cell wall A plant cell wall that is still able to expand, permitting cell growth. Primary cell walls contain more pectin than secondary walls and no lignin is present. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904742 biolink:NamedThing regulation of telomeric DNA binding Any process that modulates the frequency, rate or extent of telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl regulation of telomere binding|regulation of telomeric repeat binding nc 2015-10-19T12:18:48Z biological_process owl:Class GO:0060810 biolink:NamedThing intracellular mRNA localization involved in pattern specification process Any process in which mRNA is transported to, or maintained in, a specific location within an oocyte that results in a pattern being established in the embryo. tmpzr1t_l9r_go_relaxed.owl intracellular mRNA localisation involved in pattern specification process dph 2009-08-07T09:19:58Z biological_process owl:Class GO:1900914 biolink:NamedThing regulation of octadecene biosynthetic process Any process that modulates the frequency, rate or extent of octadecene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of octadecene biosynthesis|regulation of octadecene formation|regulation of 1-octadecene biosynthetic process|regulation of octadecene synthesis|regulation of octadecene anabolism tt 2012-06-13T04:24:24Z biological_process owl:Class GO:1900682 biolink:NamedThing octadecene biosynthetic process The chemical reactions and pathways resulting in the formation of octadecene. tmpzr1t_l9r_go_relaxed.owl octadecene synthesis|octadecene anabolism|octadecene biosynthesis|octadecene formation|1-octadecene biosynthetic process tt 2012-05-22T04:28:49Z biological_process owl:Class GO:0061471 biolink:NamedThing karyomere assembly The process where the nuclear membrane engulfs condensed chromosomes to form karyomeres during M phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-02T09:13:59Z biological_process owl:Class GO:0007084 biolink:NamedThing mitotic nuclear membrane reassembly The mitotic cell cycle process involving ESCRTIII that results in reformation of the nuclear envelope after mitotic nuclear division. In organisms undergoing closed mitosis this involves resealing or 'repair' of the nuclear envelope in the nuclear bridge. tmpzr1t_l9r_go_relaxed.owl nuclear envelope resealing|nuclear envelope repair|mitotic nuclear envelope reassembly https://github.com/geneontology/go-ontology/issues/20636|https://github.com/geneontology/go-ontology/issues/19950 biological_process owl:Class GO:0097252 biolink:NamedThing oligodendrocyte apoptotic process Any apoptotic process in an oligodendrocyte. Oligodendrocytes belong to a class of large neuroglial (macroglial) cells in the central nervous system, where they form the insulating myelin sheath of axons. tmpzr1t_l9r_go_relaxed.owl oligodendrocyte apoptosis pr 2012-03-05T10:51:15Z biological_process owl:Class GO:0055117 biolink:NamedThing regulation of cardiac muscle contraction Any process that modulates the frequency, rate or extent of cardiac muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060048 biolink:NamedThing cardiac muscle contraction Muscle contraction of cardiac muscle tissue. tmpzr1t_l9r_go_relaxed.owl heart muscle contraction biological_process owl:Class GO:0062194 biolink:NamedThing cytoplasmic microtubule minus-end A microtubule minus end that is part of a cytoplasmic microtubule. tmpzr1t_l9r_go_relaxed.owl dph 2019-12-09T19:06:36Z cellular_component owl:Class GO:0005881 biolink:NamedThing cytoplasmic microtubule Any microtubule in the cytoplasm of a cell. tmpzr1t_l9r_go_relaxed.owl non-spindle-associated astral microtubule cellular_component owl:Class GO:0021564 biolink:NamedThing vagus nerve development The process whose specific outcome is the progression of the vagus nerve over time, from its formation to the mature structure. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis. tmpzr1t_l9r_go_relaxed.owl cranial nerve 10 development|CN X development|cranial nerve X development biological_process owl:Class GO:0021783 biolink:NamedThing preganglionic parasympathetic fiber development The process whose specific outcome is the progression of a preganglionic parasympathetic fiber over time, from its formation to the mature structure. A preganglionic parasympathetic fiber is a cholinergic axonal fiber projecting from the CNS to a parasympathetic ganglion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060660 biolink:NamedThing epidermis morphogenesis involved in nipple formation The process in which the epidermis of the nipple sheath is uplifted to form an umbrella-like projection. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T11:04:04Z biological_process owl:Class GO:0060658 biolink:NamedThing nipple morphogenesis The process in which the nipple is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T10:45:44Z biological_process owl:Class GO:2000305 biolink:NamedThing semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance Any semaphorin-plexin signaling pathway that is involved in regulation of photoreceptor cell axon guidance. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signalling pathway of regulation of photoreceptor cell axon pathfinding|semaphorin-plexin signaling pathway of regulation of photoreceptor cell axon guidance|semaphorin-plexin signaling pathway of regulation of photoreceptor cell axon pathfinding|semaphorin-plexin signalling pathway of regulation of photoreceptor cell axon guidance sart 2011-01-07T01:42:34Z biological_process owl:Class GO:0090527 biolink:NamedThing actin filament reorganization A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of actin filaments. tmpzr1t_l9r_go_relaxed.owl tb 2013-01-23T10:27:44Z biological_process owl:Class GO:0036465 biolink:NamedThing synaptic vesicle recycling The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl kiss-and-run synaptic vesicle recycling|kiss-and-stay synaptic vesicle recycling bf 2014-06-26T11:03:08Z biological_process owl:Class GO:0035813 biolink:NamedThing regulation of renal sodium excretion Any process that modulates the amount of sodium excreted in urine over a unit of time. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T01:26:30Z biological_process owl:Class GO:0035812 biolink:NamedThing renal sodium excretion The elimination by an organism of sodium in the urine. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T01:24:16Z biological_process owl:Class GO:0005095 biolink:NamedThing GTPase inhibitor activity Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of GTP to GDP and orthophosphate. tmpzr1t_l9r_go_relaxed.owl GIP molecular_function owl:Class GO:1902029 biolink:NamedThing positive regulation of histone H3-K18 acetylation Any process that activates or increases the frequency, rate or extent of histone H3-K18 acetylation. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H3 acetylation at K18|up-regulation of histone H3 acetylation at K18|activation of histone H3K18 acetylation|up-regulation of histone H3K18 acetylation|upregulation of histone H3 acetylation at K18|upregulation of histone H3K18 acetylation|up regulation of histone H3K18 acetylation|positive regulation of histone H3 acetylation at K18|up-regulation of histone H3-K18 acetylation|activation of histone H3 acetylation at K18|activation of histone H3-K18 acetylation|positive regulation of histone H3K18 acetylation|up regulation of histone H3-K18 acetylation|upregulation of histone H3-K18 acetylation jl 2013-03-28T20:17:44Z biological_process owl:Class GO:0014718 biolink:NamedThing positive regulation of satellite cell activation involved in skeletal muscle regeneration Any process that activates, maintains or increases the frequency, rate or extent of activation of satellite cell involved in skeletal muscle regeneration. The activation of satellite cell is the process that initiates satellite cell division by causing it to move from quiescence to the G1 stage of the cell cycle. The cell swells and there are a number of other small changes. The cells then start to divide. Following cell division the cells will differentiate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014901 biolink:NamedThing satellite cell activation involved in skeletal muscle regeneration The process that initiates skeletal muscle satellite cell division by causing it to move from quiescence to the G1 stage of the cell cycle. The cell swells and there are a number of other small changes. The cells then start to divide. Following cell division the cells will differentiate. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000289 biolink:NamedThing nuclear-transcribed mRNA poly(A) tail shortening Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA poly(A) tail shortening|3' to 5' mRNA deadenylation|mRNA deadenylation biological_process owl:Class GO:0010856 biolink:NamedThing adenylate cyclase activator activity Increases the activity of the enzyme that catalyzes the reaction: ATP = 3',5'-cyclic AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004536 biolink:NamedThing deoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid. tmpzr1t_l9r_go_relaxed.owl caspase-activated deoxyribonuclease activity Reactome:R-HSA-6785986|Reactome:R-HSA-211247|Reactome:R-HSA-5685994 GO:0004537 molecular_function owl:Class GO:0002031 biolink:NamedThing G protein-coupled receptor internalization The process that results in the uptake of a G protein-coupled receptor into an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor internalization biological_process owl:Class GO:0002029 biolink:NamedThing desensitization of G protein-coupled receptor signaling pathway The process that stops, prevents, or reduces the frequency, rate or extent of G protein-coupled receptor signaling pathway after prolonged stimulation with an agonist of the pathway. tmpzr1t_l9r_go_relaxed.owl desensitisation of G-protein coupled receptor protein signalling pathway|desensitization of G-protein coupled receptor protein signaling pathway biological_process owl:Class GO:0019058 biolink:NamedThing viral life cycle A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome. tmpzr1t_l9r_go_relaxed.owl viral assembly, maturation, egress, and release|viral replication|viral infectious cycle|lytic viral life cycle GO:0019067 biological_process owl:Class GO:0036408 biolink:NamedThing histone acetyltransferase activity (H3-K14 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 14) = CoA + histone H3 N6-acetyl-L-lysine (position 14). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K14 specific) bf 2013-08-21T10:03:10Z molecular_function owl:Class GO:0044154 biolink:NamedThing histone H3-K14 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K14 acetylation|histone H3 acetylation at K14 jl 2009-08-11T03:40:43Z biological_process owl:Class GO:1901298 biolink:NamedThing regulation of hydrogen peroxide-mediated programmed cell death Any process that modulates the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death. tmpzr1t_l9r_go_relaxed.owl vk 2012-08-21T09:44:59Z biological_process owl:Class GO:0010421 biolink:NamedThing hydrogen peroxide-mediated programmed cell death Programmed cell death induced by hydrogen peroxide. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. tmpzr1t_l9r_go_relaxed.owl programmed cell death in response to hydrogen peroxide biological_process owl:Class GO:0015878 biolink:NamedThing biotin transport The directed movement of biotin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Biotin is cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. tmpzr1t_l9r_go_relaxed.owl vitamin B7 transport|vitamin H transport biological_process owl:Class GO:0048840 biolink:NamedThing otolith development The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903746 biolink:NamedThing positive regulation of pharyngeal pumping Any process that activates or increases the frequency, rate or extent of pharyngeal pumping. tmpzr1t_l9r_go_relaxed.owl positive regulation of pumping behavior|up regulation of pumping behavior|up-regulation of pumping behavior|upregulation of pumping behavior|upregulation of pharyngeal pumping|activation of pumping behavior|up-regulation of pharyngeal pumping|activation of pharyngeal pumping|up regulation of pharyngeal pumping kmv 2014-12-12T17:11:09Z biological_process owl:Class GO:0043050 biolink:NamedThing pharyngeal pumping The contraction and relaxation movements of the pharyngeal muscle that mediate feeding in nematodes. tmpzr1t_l9r_go_relaxed.owl pumping behavior biological_process owl:Class GO:0048890 biolink:NamedThing lateral line ganglion development The process whose specific outcome is the progression of the lateral line ganglion over time, from its formation to the mature structure. The lateral line ganglion develops from cranial ectodermal placodes situated between the eye and ear and behind the ear. tmpzr1t_l9r_go_relaxed.owl gLL ganglion development biological_process owl:Class GO:0000104 biolink:NamedThing succinate dehydrogenase activity Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl succinate:acceptor oxidoreductase activity|fumarate reductase activity|succinic dehydrogenase activity|succinyl dehydrogenase activity|succinate:(acceptor) oxidoreductase activity|succinic acid dehydrogenase activity|fumaric hydrogenase activity|succinate oxidoreductase activity|succinodehydrogenase activity|fumarate dehydrogenase activity MetaCyc:SUCC-FUM-OXRED-RXN|RHEA:16357 GO:0019739 molecular_function owl:Class GO:1905569 biolink:NamedThing negative regulation of ferrichrome biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ferrichrome biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of ferrichrome synthesis|negative regulation of ferrichrome synthesis|downregulation of ferrichrome biosynthetic process, peptide modification|down-regulation of ferrichrome formation|down regulation of ferrichrome biosynthetic process, peptide modification|downregulation of ferrichrome biosynthetic process|downregulation of ferrichrome anabolism|down regulation of ferrichrome formation|down-regulation of ferrichrome biosynthetic process, peptide modification|downregulation of ferrichrome biosynthesis|negative regulation of ferrichrome formation|down regulation of ferrichrome biosynthesis|down regulation of ferrichrome biosynthetic process, peptide formation|down regulation of ferrichrome anabolism|negative regulation of ferrichrome biosynthetic process, peptide formation|down regulation of ferrichrome synthesis|down-regulation of ferrichrome biosynthetic process, peptide formation|negative regulation of ferrichrome biosynthesis|down regulation of ferrichrome biosynthetic process|down-regulation of ferrichrome synthesis|inhibition of ferrichrome biosynthetic process, peptide modification|negative regulation of ferrichrome biosynthetic process, peptide modification|inhibition of ferrichrome formation|inhibition of ferrichrome anabolism|negative regulation of ferrichrome anabolism|down-regulation of ferrichrome biosynthesis|downregulation of ferrichrome formation|inhibition of ferrichrome biosynthetic process, peptide formation|inhibition of ferrichrome synthesis|inhibition of ferrichrome biosynthesis|down-regulation of ferrichrome biosynthetic process|downregulation of ferrichrome biosynthetic process, peptide formation|down-regulation of ferrichrome anabolism|inhibition of ferrichrome biosynthetic process pr 2016-10-18T14:49:08Z biological_process owl:Class GO:1902203 biolink:NamedThing negative regulation of hepatocyte growth factor receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of hepatocyte growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of HGF receptor signaling pathway|inhibition of Met signaling pathway|down regulation of hepatocyte growth factor receptor signaling pathway|negative regulation of HGF receptor signaling pathway|down regulation of HGF receptor signaling pathway|inhibition of HGF receptor signalling pathway|negative regulation of Met signaling pathway|down regulation of Met signaling pathway|inhibition of HGF receptor signaling pathway|downregulation of Met signaling pathway|down-regulation of hepatocyte growth factor receptor signaling pathway|downregulation of HGF receptor signaling pathway|downregulation of hepatocyte growth factor receptor signaling pathway|down regulation of HGF receptor signalling pathway|down-regulation of Met signaling pathway|downregulation of HGF receptor signalling pathway|inhibition of hepatocyte growth factor receptor signaling pathway|down-regulation of HGF receptor signalling pathway|negative regulation of HGF receptor signalling pathway lb 2013-06-10T13:20:51Z biological_process owl:Class GO:0070117 biolink:NamedThing organellar chromatophore thylakoid lumen The volume enclosed by an organellar chromatophore thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore thylakoid lumen cellular_component owl:Class GO:0003199 biolink:NamedThing endocardial cushion to mesenchymal transition involved in heart valve formation A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of a cardiac valve. tmpzr1t_l9r_go_relaxed.owl endocardial cushion to mesenchymal transition involved in valve formation dph 2009-10-08T01:31:21Z biological_process owl:Class GO:0043297 biolink:NamedThing apical junction assembly The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents. tmpzr1t_l9r_go_relaxed.owl apical junction complex assembly biological_process owl:Class GO:0022034 biolink:NamedThing rhombomere cell proliferation The multiplication or reproduction of rhombomere cells, resulting in the expansion of the cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021546 biolink:NamedThing rhombomere development The process whose specific outcome is the progression of the rhombomere over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043266 biolink:NamedThing regulation of potassium ion transport Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of K+ transport|regulation of potassium ion conductance|regulation of potassium conductance|regulation of K+ conductance|regulation of potassium transport biological_process owl:Class GO:0006813 biolink:NamedThing potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl low voltage-dependent potassium channel auxiliary protein activity|potassium ion conductance|potassium conductance|K+ conductance|cellular potassium ion transport|sodium/potassium transport|potassium transport|low voltage-gated potassium channel auxiliary protein activity mah 2010-09-03T02:39:22Z GO:0015458|GO:0071804 biological_process owl:Class GO:0032953 biolink:NamedThing regulation of (1->3)-beta-D-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of 1,3-beta-glucan biosynthesis|regulation of 1,3-beta-glucan biosynthetic process|regulation of 1,3-beta-glucan anabolism|regulation of 1,3-beta-glucan synthesis|regulation of 1,3-beta-glucan formation biological_process owl:Class GO:0006075 biolink:NamedThing (1->3)-beta-D-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-glucan synthesis|beta-1,3 glucan anabolism|beta-1,3 glucan biosynthetic process|1,3-beta-glucan formation|beta-1,3 glucan synthesis|1,3-beta-glucan biosynthesis|1,3-beta-glucan anabolism|beta-1,3 glucan formation|1,3-beta-D-glucan biosynthetic process|beta-1,3 glucan biosynthesis biological_process owl:Class GO:0032622 biolink:NamedThing interleukin-19 production The appearance of interleukin-19 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-19 production|interleukin-19 secretion|IL-19 secretion|ZMDA1 secretion|interleukin-19 biosynthetic process GO:0042236|GO:0072617 biological_process owl:Class GO:0033520 biolink:NamedThing phytol biosynthetic process The chemical reactions and pathways resulting in the formation of phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl phytol formation|phytol biosynthesis|phytol synthesis|phytol anabolism biological_process owl:Class GO:1901453 biolink:NamedThing positive regulation of response to benzene Any process that activates or increases the frequency, rate or extent of response to benzene. tmpzr1t_l9r_go_relaxed.owl activation of response to benzene|up regulation of response to benzene|up-regulation of response to benzene|upregulation of response to benzene tt 2012-10-02T14:20:41Z biological_process owl:Class GO:1901423 biolink:NamedThing response to benzene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzene stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T18:35:11Z biological_process owl:Class GO:0098856 biolink:NamedThing intestinal lipid absorption Any process in which lipids are taken up from the contents of the intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120003 biolink:NamedThing hinge region between urothelial plaques of apical plasma membrane A narrow rim of non-thickened membrane in between urothelial plaques in apical plasma membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12996 krc 2017-02-23T22:13:27Z cellular_component owl:Class GO:0016324 biolink:NamedThing apical plasma membrane The region of the plasma membrane located at the apical end of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051200 biolink:NamedThing positive regulation of prosthetic group metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group. tmpzr1t_l9r_go_relaxed.owl positive regulation of prosthetic group metabolism|positive regulation of coenzyme and prosthetic group metabolism|stimulation of prosthetic group metabolic process|activation of prosthetic group metabolic process|positive regulation of coenzyme and prosthetic group metabolic process|up-regulation of prosthetic group metabolic process|up regulation of prosthetic group metabolic process|upregulation of prosthetic group metabolic process biological_process owl:Class GO:0010026 biolink:NamedThing trichome differentiation The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl trichome cell differentiation GO:0048271 biological_process owl:Class GO:0090558 biolink:NamedThing plant epidermis development The process whose specific outcome is the progression of the plant epidermis over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tb 2014-02-27T15:17:37Z biological_process owl:Class GO:1903975 biolink:NamedThing regulation of glial cell migration Any process that modulates the frequency, rate or extent of glial cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of glia cell migration nc 2015-03-02T15:13:31Z biological_process owl:Class GO:0031088 biolink:NamedThing platelet dense granule membrane The lipid bilayer surrounding the platelet dense granule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005765 biolink:NamedThing lysosomal membrane The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl lysosome membrane cellular_component owl:Class GO:0060276 biolink:NamedThing maintenance of stationary phase in response to toxin The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to a build-up of toxins in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902428 biolink:NamedThing negative regulation of water channel activity Any process that stops, prevents or reduces the frequency, rate or extent of water channel activity. tmpzr1t_l9r_go_relaxed.owl down regulation of aquaporin|down regulation of water channel activity|inhibition of aquaporin|negative regulation of aquaporin|downregulation of water channel activity|down-regulation of aquaporin|down-regulation of water channel activity|inhibition of water channel activity|downregulation of aquaporin bf 2013-09-23T12:56:40Z biological_process owl:Class GO:0015250 biolink:NamedThing water channel activity Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl aquaporin Reactome:R-HSA-445714|Reactome:R-HSA-507870|Reactome:R-HSA-432065|Reactome:R-HSA-432010|RHEA:29667|Reactome:R-HSA-432067|Reactome:R-HSA-507868|Reactome:R-HSA-432054 molecular_function owl:Class GO:0032588 biolink:NamedThing trans-Golgi network membrane The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network. tmpzr1t_l9r_go_relaxed.owl trans Golgi network membrane|Golgi trans face membrane cellular_component owl:Class GO:0005802 biolink:NamedThing trans-Golgi network The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. tmpzr1t_l9r_go_relaxed.owl Golgi trans face|maturing face|trans face|TGN|trans Golgi network|Golgi trans-face|late Golgi NIF_Subcellular:sao9456487 There are different opinions about whether the TGN should be considered part of the Golgi apparatus or not. We follow Alberts et al, 1994 (ISBN:0815316194), who consider it to be a part. cellular_component owl:Class GO:0042790 biolink:NamedThing nucleolar large rRNA transcription by RNA polymerase I The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl transcription of nuclear large rRNA transcript from RNA polymerase I promoter|transcription of nucleolar large rRNA by RNA polymerase I|transcription of nuclear rRNA large Pol I transcript https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:2000886 biolink:NamedThing glucuronoxylan catabolic process The chemical reactions and pathways resulting in the breakdown of a glucuronoxylan. tmpzr1t_l9r_go_relaxed.owl glucuronoxylan catabolism jl 2011-07-28T09:37:06Z biological_process owl:Class GO:0019914 biolink:NamedThing cyclin-dependent protein kinase activating kinase regulator activity Modulation of the activity of the enzyme cyclin-dependent protein kinase activating kinase. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase activating kinase, intrinsic regulator activity EC:2.7.1.- molecular_function owl:Class GO:1904541 biolink:NamedThing fungal-type cell wall disassembly involved in conjugation with cellular fusion Any fungal-type cell wall disassembly that is involved in conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall disassembly involved in mating|fungal-type cell wall disassembly involved in cell fusion al 2015-08-10T17:12:51Z biological_process owl:Class GO:0071341 biolink:NamedThing medial cortical node A component of the cell division site that contains the mid1, cdr2, wee1, klp8, and blt1 proteins, and is involved in contractile ring localization. Medial cortical node complexes appear as cortical dots in the middle of the cell during interphase, and function to recruit other ring components in early mitosis. tmpzr1t_l9r_go_relaxed.owl mid1p medial cortical dot|midsome mah 2009-12-11T11:40:36Z cellular_component owl:Class GO:0031097 biolink:NamedThing medial cortex A medial cortical band overlaying the nucleus which acts as a landmark for contractile ring positioning and plays a role in cell cycle regulation. tmpzr1t_l9r_go_relaxed.owl medial ring cellular_component owl:Class GO:2000178 biolink:NamedThing negative regulation of neural precursor cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of neural precursor cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T12:40:43Z biological_process owl:Class GO:0075323 biolink:NamedThing positive regulation of oomycete sporangium development Any process that activates, maintains or increases the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031098 biolink:NamedThing stress-activated protein kinase signaling cascade A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals. tmpzr1t_l9r_go_relaxed.owl JNK signalling pathway|JNK signaling pathway|SAPK signalling pathway|SAPK signaling pathway|stress-activated protein kinase signaling pathway|stress-activated protein kinase signalling pathway biological_process owl:Class GO:0032280 biolink:NamedThing symmetric synapse A synapse that lacks an electron dense postsynaptic specialization. In vertebtrates, these occur primarily on dendrite shafts and neuronal cell bodies and involve persynapses containing clusters of predominantly flattened or elongated vesicles and are typcially inhibitory. tmpzr1t_l9r_go_relaxed.owl Gray's type II synapse The term 'symmetric' in this name refers only to gross morphology. There is no implication of functional symmetry. cellular_component owl:Class GO:1904718 biolink:NamedThing negative regulation of AMPA glutamate receptor clustering Any process that stops, prevents or reduces the frequency, rate or extent of AMPA glutamate receptor clustering. tmpzr1t_l9r_go_relaxed.owl inhibition of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|down regulation of AMPA receptor clustering|downregulation of AMPA receptor clustering|down-regulation of AMPA glutamate receptor clustering|inhibition of AMPA receptor clustering|down regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|down-regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|downregulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|negative regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|down regulation of AMPA glutamate receptor clustering|down-regulation of AMPA receptor clustering|downregulation of AMPA glutamate receptor clustering|inhibition of AMPA glutamate receptor clustering|negative regulation of AMPA receptor clustering hjd 2015-10-07T19:32:28Z biological_process owl:Class GO:0097113 biolink:NamedThing AMPA glutamate receptor clustering The glutamate receptor clustering process in which alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl AMPA receptor clustering|alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering pr 2011-07-31T05:25:53Z biological_process owl:Class GO:0060888 biolink:NamedThing limb epidermis stratification The pattern specification process that results in the subdivision of the epidermis of the limb in space to define a volume in which specific patterns of basal cell, spinous cell and granular cells will differentiate giving rise to the layers of the limb epidermis. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T12:45:48Z biological_process owl:Class GO:0006489 biolink:NamedThing dolichyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dolichyl diphosphate, a diphosphorylated dolichol derivative. tmpzr1t_l9r_go_relaxed.owl dolichyl diphosphate biosynthesis|dolichyl diphosphate formation|dolichyl diphosphate anabolism|dolichyl diphosphate synthesis biological_process owl:Class GO:0006488 biolink:NamedThing dolichol-linked oligosaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P. tmpzr1t_l9r_go_relaxed.owl dolichol-linked oligosaccharide anabolism|dolichol-linked oligosaccharide biosynthesis|dolichol-linked oligosaccharide formation|oligosaccharide-PP-dolichol assembly|N-linked glycan precursor biosynthetic process|N-linked glycan precursor biosynthesis|dolichol-linked oligosaccharide synthesis biological_process owl:Class GO:1900653 biolink:NamedThing negative regulation of demethylkotanin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of demethylkotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of demethylkotanin synthesis|downregulation of demethylkotanin anabolism|down-regulation of demethylkotanin synthesis|down-regulation of demethylkotanin biosynthetic process|down regulation of demethylkotanin biosynthetic process|inhibition of demethylkotanin biosynthetic process|negative regulation of demethylkotanin synthesis|down-regulation of demethylkotanin anabolism|inhibition of demethylkotanin anabolism|down-regulation of demethylkotanin formation|inhibition of demethylkotanin synthesis|down regulation of demethylkotanin anabolism|inhibition of demethylkotanin formation|downregulation of demethylkotanin biosynthesis|down-regulation of demethylkotanin biosynthesis|negative regulation of demethylkotanin formation|downregulation of demethylkotanin synthesis|downregulation of demethylkotanin formation|inhibition of demethylkotanin biosynthesis|down regulation of demethylkotanin biosynthesis|negative regulation of demethylkotanin biosynthesis|downregulation of demethylkotanin biosynthetic process|down regulation of demethylkotanin formation|negative regulation of demethylkotanin anabolism di 2012-05-22T04:07:41Z biological_process owl:Class GO:1900599 biolink:NamedThing demethylkotanin biosynthetic process The chemical reactions and pathways resulting in the formation of demethylkotanin. tmpzr1t_l9r_go_relaxed.owl demethylkotanin biosynthesis|demethylkotanin synthesis|demethylkotanin formation|demethylkotanin anabolism di 2012-05-15T06:55:21Z biological_process owl:Class GO:0007299 biolink:NamedThing ovarian follicle cell-cell adhesion The attachment of a somatic follicle cell to another somatic follicle cell or to its substratum, the germline cells. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl follicle cell adhesion|ovarian follicle cell adhesion biological_process owl:Class GO:0034095 biolink:NamedThing negative regulation of maintenance of meiotic sister chromatid cohesion Any process that decreases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098837 biolink:NamedThing postsynaptic recycling endosome A recycling endosome of the postsynapse. In postsynaptic terminals with dendritic spines, it is typically located at the base of a dendritic spine. It is involved in recycling of neurotransmitter receptors to the postsynaptic membrane. In some cases at least, this recycling is activated by postsynaptic signalling and so can play a role in long term potentiation. tmpzr1t_l9r_go_relaxed.owl postsynaptic endosomal recycling compartment|postsynaptic recycling outpost cellular_component owl:Class GO:0031649 biolink:NamedThing heat generation Any homeostatic process in which an organism produces heat, thereby raising its internal temperature. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000772 biolink:NamedThing regulation of cellular senescence Any process that modulates the frequency, rate or extent of cellular senescence. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-22T01:57:04Z biological_process owl:Class GO:0110025 biolink:NamedThing DNA strand resection involved in replication fork processing The 5' to 3' exonucleolytic resection of DNA at the site of a stalled replication fork that contributes to replication fork processing. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-05T14:43:36Z biological_process owl:Class GO:0032007 biolink:NamedThing negative regulation of TOR signaling Any process that stops, prevents, or reduces the frequency, rate or extent of TOR signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of TOR signaling cascade|negative regulation of TOR signaling pathway|down-regulation of TOR signaling pathway|down regulation of TOR signaling pathway|negative regulation of target of rapamycin signaling pathway|negative regulation of TOR signalling pathway|downregulation of TOR signaling pathway|negative regulation of target of rapamycin signalling pathway|inhibition of TOR signaling pathway biological_process owl:Class GO:0031929 biolink:NamedThing TOR signaling A series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors. tmpzr1t_l9r_go_relaxed.owl TOR signaling pathway|TOR signal transduction|target of rapamycin signalling pathway|TOR signaling cascade|target of rapamycin signaling pathway|TOR signalling pathway Note that this term should not be confused with 'torso signaling pathway ; GO:0008293', although torso is abbreviated 'tor'. biological_process owl:Class GO:0033146 biolink:NamedThing regulation of intracellular estrogen receptor signaling pathway Any process that modulates the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of estrogen receptor signalling pathway|regulation of estrogen receptor signaling pathway biological_process owl:Class GO:0030520 biolink:NamedThing intracellular estrogen receptor signaling pathway Any series of molecular signals generated as a consequence of an intracellular estrogen receptor binding to one of its physiological ligands. The pathway begins with receptor-ligand binding, and ends with regulation of a downstream cellular process (e.g. transcription). tmpzr1t_l9r_go_relaxed.owl estrogen receptor signaling pathway|estrogen receptor signalling pathway biological_process owl:Class GO:0061308 biolink:NamedThing cardiac neural crest cell development involved in heart development The process aimed at the progression of a cardiac neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell that contributes to the development of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-23T09:01:49Z biological_process owl:Class GO:0021597 biolink:NamedThing central nervous system structural organization The process that contributes to the act of creating the structural organization of the central nervous system structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. tmpzr1t_l9r_go_relaxed.owl central nervous system structural organisation biological_process owl:Class GO:2000547 biolink:NamedThing regulation of dendritic cell dendrite assembly Any process that modulates the frequency, rate or extent of dendritic cell dendrite assembly. tmpzr1t_l9r_go_relaxed.owl regulation of dendritic extension ebc 2011-04-03T07:21:55Z biological_process owl:Class GO:0097026 biolink:NamedThing dendritic cell dendrite assembly Formation of dendrites, branched cellular projections (or cytoplasmic extension) that are extended from the surface of a dendritic immune cell, and which enable the cell to sample luminal pathogens and increase the surface area for antigen presentation to T cells. tmpzr1t_l9r_go_relaxed.owl dendritic extension Note that dendrites of dendritic cells should not be confused with neuronal cell dendrites, which process electrical signals. pr 2011-03-31T04:52:53Z biological_process owl:Class GO:0075311 biolink:NamedThing positive regulation of sporangium development Any process that activates, maintains or increases the frequency, rate or extent of sporangium development, a process that leads to the formation of sporangium, a single-celled or many-celled structure in which spores are produced, as in fungi, algae, mosses, and ferns, gymnosperms, angiosperms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043708 biolink:NamedThing cell adhesion involved in biofilm formation The attachment of a cell to a solid substrate, via cell adhesion molecules, contributing to the formation of a biofilm. tmpzr1t_l9r_go_relaxed.owl cell adhesion during biofilm formation biological_process owl:Class GO:0060653 biolink:NamedThing epithelial cell differentiation involved in mammary gland cord morphogenesis The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland cord. Epithelial cells of the mammary cord give it its funnel-like shape and some are cornified. tmpzr1t_l9r_go_relaxed.owl epithelial cell differentiation involved in mammary gland sprout morphogenesis dph 2009-05-29T09:17:16Z biological_process owl:Class GO:0060652 biolink:NamedThing mammary gland cord morphogenesis The process in which anatomical structures of the mammary gland cord are generated and organized. Mammary gland cords form when the mammary gland bud invades the mammary fat. tmpzr1t_l9r_go_relaxed.owl mammary gland sprout morphogenesis dph 2009-05-29T09:06:56Z biological_process owl:Class GO:0097361 biolink:NamedThing CIA complex The cytosolic iron-sulfur protein assembly (CIA) complex mediates the incorporation of iron-sulfur clusters into apoproteins involved in DNA metabolism and genomic integrity. tmpzr1t_l9r_go_relaxed.owl cytosolic iron-sulfur protein assembly complex pr 2012-07-20T02:07:22Z cellular_component owl:Class GO:0070747 biolink:NamedThing interleukin-35 receptor activity Combining with interleukin-35 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-35 receptor activity|IL-35R mah 2009-06-23T01:18:09Z molecular_function owl:Class GO:0070746 biolink:NamedThing interleukin-35 binding Binding to interleukin-35. tmpzr1t_l9r_go_relaxed.owl IL-35 binding mah 2009-06-23T01:15:36Z molecular_function owl:Class GO:0048449 biolink:NamedThing floral organ formation The process that gives rise to floral organs. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048436 biological_process owl:Class GO:0120263 biolink:NamedThing positive regulation of heterochromatin organization Any process that activates or increases the frequency, rate or extent of heterochromatin organization. tmpzr1t_l9r_go_relaxed.owl upregulation of heterochromatin organization|activation of heterochromatin organization|stimulation of heterochromatin organization|up regulation of heterochromatin organization|up-regulation of heterochromatin organization https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:19:19Z biological_process owl:Class GO:0070828 biolink:NamedThing heterochromatin organization Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin. tmpzr1t_l9r_go_relaxed.owl heterochromatin organisation mah 2009-07-23T04:12:48Z biological_process owl:Class GO:0015213 biolink:NamedThing uridine transmembrane transporter activity Enables the transfer of uridine, uracil riboside, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl uracil/uridine permease activity molecular_function owl:Class GO:0015862 biolink:NamedThing uridine transport The directed movement of uridine, uracil riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072001 biolink:NamedThing renal system development The process whose specific outcome is the progression of the renal system over time, from its formation to the mature structure. The renal system maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels. tmpzr1t_l9r_go_relaxed.owl urinary system development|urinary tract development mah 2010-01-25T10:31:00Z biological_process owl:Class GO:0044611 biolink:NamedThing nuclear pore inner ring A subcomplex of the nuclear pore complex (NPC) that forms the inner rings of the core scaffold, a lattice-like structure that gives the NPC its shape and strength. In S. cerevisiae, the two inner rings are each composed of Nup192p, Nup188p, Nup170p and Nup157p. In vertebrates, the two inner rings are each composed of Nup205, Nup188 and Nup155. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometimes referred to as the Nup170 complex. tmpzr1t_l9r_go_relaxed.owl Nup170 complex jl 2012-06-20T01:14:17Z cellular_component owl:Class GO:0106175 biolink:NamedThing phagolysosome vesicle membrane The lipid bylayer surrounding a phagolysosome. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-11T19:12:53Z cellular_component owl:Class GO:0032010 biolink:NamedThing phagolysosome A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes. tmpzr1t_l9r_go_relaxed.owl late phagosome|late phagocytic vesicle Wikipedia:Phagolysosome cellular_component owl:Class GO:0035989 biolink:NamedThing tendon development The process whose specific outcome is the progression of a tendon over time, from its formation to the mature structure. A tendon is a fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons and muscles work together to exert a pulling force. tmpzr1t_l9r_go_relaxed.owl sinew development bf 2011-08-26T04:14:30Z biological_process owl:Class GO:1900195 biolink:NamedThing positive regulation of oocyte maturation Any process that activates or increases the frequency, rate or extent of oocyte maturation. tmpzr1t_l9r_go_relaxed.owl up regulation of oocyte maturation|up-regulation of oocyte maturation|upregulation of oocyte maturation|activation of oocyte maturation kmv 2012-03-19T09:41:35Z biological_process owl:Class GO:0007638 biolink:NamedThing mechanosensory behavior Behavior that is dependent upon the sensation of a mechanical stimulus. tmpzr1t_l9r_go_relaxed.owl behavioral response to mechanical stimulus|mechanosensory behaviour|behavioural response to mechanical stimulus biological_process owl:Class GO:0009612 biolink:NamedThing response to mechanical stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus. tmpzr1t_l9r_go_relaxed.owl chemi-mechanical coupling|mechanical stimulus response biological_process owl:Class GO:0060042 biolink:NamedThing retina morphogenesis in camera-type eye The process in which the anatomical structure of the retina is generated and organized. tmpzr1t_l9r_go_relaxed.owl retinogenesis|retina morphogenesis in camera-style eye biological_process owl:Class GO:0016593 biolink:NamedThing Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. tmpzr1t_l9r_go_relaxed.owl Paf1 complex|Paf1p complex cellular_component owl:Class GO:1900497 biolink:NamedThing regulation of butyryl-CoA catabolic process to butanol Any process that modulates the frequency, rate or extent of butyryl-CoA catabolic process to butanol. tmpzr1t_l9r_go_relaxed.owl regulation of butyryl-CoA catabolism to butanol tt 2012-05-02T03:53:20Z biological_process owl:Class GO:0044582 biolink:NamedThing butyryl-CoA catabolic process to butanol The chemical reactions a resulting in the resulting in the breakdown of butyryl-CoA to form butanol. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA catabolism to butanol jl 2012-04-19T04:40:06Z biological_process owl:Class GO:0006933 biolink:NamedThing negative regulation of cell adhesion involved in substrate-bound cell migration The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction. tmpzr1t_l9r_go_relaxed.owl substrate-bound cell migration, cell release from substrate biological_process owl:Class GO:0003211 biolink:NamedThing cardiac ventricle formation The developmental process pertaining to the initial formation of a cardiac ventricle from unspecified parts. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:46:27Z biological_process owl:Class GO:0007502 biolink:NamedThing digestive tract mesoderm development The process whose specific outcome is the progression of the digestive tract mesoderm over time, from its formation to the mature structure. The digestive tract mesoderm is portion of the middle layer of the three primary germ layers of the embryo which will go on to form part of the digestive tract of the organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072136 biolink:NamedThing metanephric mesenchymal cell proliferation involved in metanephros development The multiplication or reproduction of cells, resulting in the expansion of a metanephric mesenchymal cell population. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:34:56Z biological_process owl:Class GO:0072075 biolink:NamedThing metanephric mesenchyme development The biological process whose specific outcome is the progression of a metanephric mesenchyme from an initial condition to its mature state. This process begins with the formation of metanephric mesenchyme and ends with the mature structure. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:40:11Z biological_process owl:Class GO:2001036 biolink:NamedThing negative regulation of tongue muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of tongue muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-24T11:10:20Z biological_process owl:Class GO:0035981 biolink:NamedThing tongue muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a tongue muscle cell. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-22T01:35:16Z biological_process owl:Class GO:0019218 biolink:NamedThing regulation of steroid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids. tmpzr1t_l9r_go_relaxed.owl regulation of steroid metabolism biological_process owl:Class GO:0021793 biolink:NamedThing chemorepulsion of branchiomotor axon The process in which a branchiomotor neuron growth cone is directed to a specific target site in response to a repulsive chemical cue. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis of branchiomotor axon biological_process owl:Class GO:0021785 biolink:NamedThing branchiomotor neuron axon guidance The process in which a branchiomotor neuron growth cone is directed to a specific target site. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl BMN axon guidance|branchial motor axon guidance|special visceral motor neuron axon guidance biological_process owl:Class GO:0033018 biolink:NamedThing sarcoplasmic reticulum lumen The volume enclosed by the membranes of the sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072189 biolink:NamedThing ureter development The process whose specific outcome is the progression of the ureter over time, from its formation to the mature structure. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder or from the Malpighian tubule to the hindgut. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:44:14Z biological_process owl:Class GO:0002899 biolink:NamedThing negative regulation of central B cell deletion Any process that stops, prevents, or reduces the frequency, rate, or extent of central B cell deletion. tmpzr1t_l9r_go_relaxed.owl down regulation of central B cell deletion|down-regulation of central B cell deletion|downregulation of central B cell deletion|inhibition of central B cell deletion biological_process owl:Class GO:0002342 biolink:NamedThing central B cell deletion The deletion of B cells by apoptotic process occurring as part of central tolerance induction and B cell selection. tmpzr1t_l9r_go_relaxed.owl central B lymphocyte deletion|central B-lymphocyte deletion|central B-cell deletion biological_process owl:Class GO:0001658 biolink:NamedThing branching involved in ureteric bud morphogenesis The process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules. tmpzr1t_l9r_go_relaxed.owl ureteric bud branching biological_process owl:Class GO:0005621 biolink:NamedThing cellular bud scar Crater-like ring of chitinous scar tissue located on the surface of the mother cell. It is formed after the newly emerged daughter cell separates thereby marking the site of cytokinesis and septation. The number of bud scars that accumulate on the surface of a cell is a useful determinant of replicative age. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902407 biolink:NamedThing assembly of actomyosin apparatus involved in mitotic cytokinesis Any assembly of mitotic cytokinetic actomyosin apparatus. tmpzr1t_l9r_go_relaxed.owl cytokinesis, formation of actomyosin apparatus involved in mitotic cell cycle|formation of actomyosin apparatus involved in cytokinesis involved in mitotic cell cycle|actomyosin apparatus assembly involved in cytokinesis involved in mitotic cell cycle jl 2013-09-12T12:28:22Z biological_process owl:Class GO:0043676 biolink:NamedThing tectum The layer of sexine which forms a roof over the columella, granules or other infratectal elements. tmpzr1t_l9r_go_relaxed.owl sexine 2 cellular_component owl:Class GO:0043673 biolink:NamedThing sexine The outer, sculptured layer of the exine, which lies above the nexine. tmpzr1t_l9r_go_relaxed.owl Note that the sexine sometimes consists of 5 layers, but of those, 3 layers are the most common (sexine 1 = columellae; sexine 2 = tectum; sexine 3 = sculpture elements). Sexine is distinguished on purely morphological criteria; compare with 'ectexine ; GO:0043669'. See also 'nexine ; GO:0043672'. cellular_component owl:Class GO:2000864 biolink:NamedThing regulation of estradiol secretion Any process that modulates the frequency, rate or extent of estradiol secretion. tmpzr1t_l9r_go_relaxed.owl regulation of oestradiol secretion bf 2011-07-26T08:49:13Z biological_process owl:Class GO:0035938 biolink:NamedThing estradiol secretion The regulated release of estradiol into the circulatory system. tmpzr1t_l9r_go_relaxed.owl oestradiol secretion bf 2011-07-20T01:16:45Z biological_process owl:Class GO:0098894 biolink:NamedThing extrinsic component of presynaptic endocytic zone membrane The component of the presynaptic endocytic zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071554 biolink:NamedThing cell wall organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall organization or biogenesis at cellular level|cell wall organisation or biogenesis|cellular cell wall organization or biogenesis|cellular cell wall organisation or biogenesis mah 2010-01-13T03:19:38Z GO:0070882 biological_process owl:Class GO:1903461 biolink:NamedThing Okazaki fragment processing involved in mitotic DNA replication Any DNA replication, Okazaki fragment processing that is involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication, Okazaki fragment processing involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA replication, Okazaki fragment processing involved in mitotic nuclear cell cycle DNA replication|DNA replication, Okazaki fragment processing involved in DNA replication during S phase involved in mitotic cell cycle|DNA replication, Okazaki fragment processing involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA replication, Okazaki fragment processing involved in DNA replication involved in S-phase involved in mitotic cell cycle vw 2014-09-23T13:33:11Z biological_process owl:Class GO:0072185 biolink:NamedThing metanephric cap development The biological process whose specific outcome is the progression of the metanephric cap from an initial condition to its mature state. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:20:22Z biological_process owl:Class GO:1905082 biolink:NamedThing regulation of mitochondrial translational elongation Any process that modulates the frequency, rate or extent of mitochondrial translational elongation. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial translation elongation hjd 2016-03-25T17:37:03Z biological_process owl:Class GO:0070527 biolink:NamedThing platelet aggregation The adhesion of one platelet to one or more other platelets via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl blood platelet aggregation|thrombocyte aggregation biological_process owl:Class GO:0001654 biolink:NamedThing eye development The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Eye_development GO:0042460 biological_process owl:Class GO:1903355 biolink:NamedThing negative regulation of distal tip cell migration Any process that stops, prevents or reduces the frequency, rate or extent of distal tip cell migration. tmpzr1t_l9r_go_relaxed.owl downregulation of distal tip cell migration|inhibition of distal tip cell migration|down regulation of distal tip cell migration|down-regulation of distal tip cell migration pr 2014-08-21T10:05:17Z biological_process owl:Class GO:0060236 biolink:NamedThing regulation of mitotic spindle organization Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic spindle organization and biogenesis|regulation of mitotic spindle organisation biological_process owl:Class GO:1904091 biolink:NamedThing peptidyl carrier protein activity Binding an amino-acid derived peptidyl group and presenting it for processing or offloading to a cognate enzyme. Covalently binds the peptidyl group via a phosphopantetheine prosthetic group and mediates protein-protein interactions with the enzyme conferring specificity. Peptidyl carrier protein (PCP) is involved in nonribosomal peptide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl Oligopeptid binding involved in nonribosomal peptide biosynthetic process|oligopeptides binding involved in nonribosomal peptide biosynthetic process|oligopeptides binding involved in non-ribosomal peptide formation|oligopeptide binding involved in non-ribosomal peptide biosynthetic process|Oligopeptid binding involved in nonribosomal peptide synthetase|oligopeptido binding involved in nonribosomal peptide biosynthetic process|oligopeptides binding involved in nonribosomal peptide anabolism|oligopeptido binding involved in nonribosomal peptide synthetase|peptidyl binding involved in nonribosomal peptide biosynthetic process|Oligopeptid binding involved in non-ribosomal peptide biosynthesis|peptidyl binding involved in nonribosomal peptide biosynthesis|oligopeptide binding involved in nonribosomal peptide biosynthesis|oligopeptido binding involved in non-ribosomal peptide biosynthetic process|oligopeptides binding involved in nonribosomal peptide synthetase|oligopeptides binding involved in nonribosomal peptide synthesis|oligopeptide binding involved in nonribosomal peptide formation|oligopeptide binding involved in nonribosomal peptide biosynthetic process|oligopeptides binding involved in nonribosomal peptide biosynthesis|Oligopeptid binding involved in nonribosomal peptide anabolism|oligopeptido binding involved in non-ribosomal peptide formation|oligopeptido binding involved in nonribosomal peptide anabolism|oligopeptides binding involved in non-ribosomal peptide biosynthetic process|Oligopeptid binding involved in non-ribosomal peptide biosynthetic process|peptidyl carrier protein|Oligopeptid binding involved in nonribosomal peptide biosynthesis|oligopeptido binding involved in nonribosomal peptide formation|oligopeptides binding involved in non-ribosomal peptide synthesis|Oligopeptid binding involved in non-ribosomal peptide synthesis|peptidyl carrier protein activity involved in nonribosomal peptide biosynthesis|oligopeptide binding involved in non-ribosomal peptide synthesis|oligopeptide binding involved in nonribosomal peptide anabolism|peptidyl carrier protein activity involved in nonribosomal peptide biosynthetic process|oligopeptido binding involved in non-ribosomal peptide biosynthesis|Oligopeptid binding involved in nonribosomal peptide synthesis|oligopeptide binding involved in nonribosomal peptide synthetase|oligopeptides binding involved in non-ribosomal peptide biosynthesis|Oligopeptid binding involved in nonribosomal peptide formation|oligopeptide binding involved in non-ribosomal peptide formation|oligopeptides binding involved in nonribosomal peptide formation|Oligopeptid binding involved in non-ribosomal peptide formation|oligopeptido binding involved in nonribosomal peptide biosynthesis|oligopeptide binding involved in non-ribosomal peptide biosynthesis|oligopeptido binding involved in nonribosomal peptide synthesis|oligopeptide binding involved in nonribosomal peptide synthesis|PCP|oligopeptido binding involved in non-ribosomal peptide synthesis Examples are the ferrichrome synthetase Sib1 in S. pombe and the peptidyl carrier protein (PCP) module in bacterial nonribosomal peptide synthases (NRPSs), which holds the peptidyl group and acts as a swinging arm, limiting diffusion until the peptide comes into contact with the next enzymatic module in the NRPS process. pr 2015-03-26T10:41:52Z molecular_function owl:Class GO:0019184 biolink:NamedThing nonribosomal peptide biosynthetic process The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione. tmpzr1t_l9r_go_relaxed.owl nonribosomal peptide formation|nonribosomal peptide synthesis|nonribosomal peptide synthetase|non-ribosomal peptide biosynthetic process|non-ribosomal peptide formation|nonribosomal peptide anabolism|non-ribosomal peptide biosynthesis|non-ribosomal peptide synthesis|nonribosomal peptide biosynthesis biological_process owl:Class GO:0021610 biolink:NamedThing facial nerve morphogenesis The process in which the anatomical structure of the facial nerve is generated and organized. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl CN VII morphogenesis biological_process owl:Class GO:0021561 biolink:NamedThing facial nerve development The process whose specific outcome is the progression of the facial nerve over time, from its formation to the mature structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives off nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl CN VII development|cranial nerve 7 development|cranial nerve VII development biological_process owl:Class GO:0044777 biolink:NamedThing single-stranded DNA-binding protein complex A homotetrameric protein complex that is essential for DNA replication. It supercoils the single-stranded DNA preventing DNA duplexing before the polymerase holoenzyme passes and synthesizes the complementary strand. It is also involved in DNA recombination and repair. tmpzr1t_l9r_go_relaxed.owl SSB complex jl 2013-03-14T13:14:00Z cellular_component owl:Class GO:0002023 biolink:NamedThing reduction of food intake in response to dietary excess An eating behavior process whereby detection of a dietary excess results in a decrease in intake of nutrients. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035772 biolink:NamedThing interleukin-13-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-13 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-13-mediated signaling pathway|interleukin-13-mediated signalling pathway bf 2011-04-01T11:00:11Z biological_process owl:Class GO:0035963 biolink:NamedThing cellular response to interleukin-13 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-13 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-13 bf 2011-08-01T11:29:42Z biological_process owl:Class GO:0045471 biolink:NamedThing response to ethanol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus. tmpzr1t_l9r_go_relaxed.owl GO:0017036 biological_process owl:Class GO:0099109 biolink:NamedThing potassium channel activating, G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds activation of a potassium ion channel. tmpzr1t_l9r_go_relaxed.owl potassium channel activating, G-protein coupled receptor signaling pathway biological_process owl:Class GO:0001164 biolink:NamedThing RNA polymerase I core promoter sequence-specific DNA binding Binding to a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery. This site is often referred to as the CORE element. In mammalian cells, the CORE element functions in conjunction with the Upstream Control Element (UCE), while in fungi, protozoa, and plants, the CORE element functions without a UCE. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I CORE element sequence-specific DNA binding|RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription factor activity, RNA polymerase I CORE element binding transcription factor recruiting krc 2011-01-31T04:47:48Z GO:0001187 molecular_function owl:Class GO:0001188 biolink:NamedThing RNA polymerase I preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase I promoter. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nucleolar primary rRNA transcript|RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript|RNA polymerase I transcriptional preinitiation complex assembly krc 2011-08-24T04:16:28Z GO:0001189 biological_process owl:Class GO:0070424 biolink:NamedThing regulation of nucleotide-binding oligomerization domain containing signaling pathway Any process that modulates the frequency, rate, or extent of a nucleotide-binding oligomerization domain containing (NOD) pathway. tmpzr1t_l9r_go_relaxed.owl regulation of NOD signaling pathway|regulation of nucleotide-binding oligomerization domain containing signalling pathway biological_process owl:Class GO:0070423 biolink:NamedThing nucleotide-binding oligomerization domain containing signaling pathway Any series of molecular signals generated as a consequence of binding to a nucleotide-binding oligomerization domain containing (NOD) protein. tmpzr1t_l9r_go_relaxed.owl NOD signaling pathway|nucleotide-binding oligomerization domain containing signalling pathway biological_process owl:Class GO:0060448 biolink:NamedThing dichotomous subdivision of terminal units involved in lung branching The process in which a lung bud bifurcates. tmpzr1t_l9r_go_relaxed.owl bud bifurcation involved in lung branching biological_process owl:Class GO:0060441 biolink:NamedThing epithelial tube branching involved in lung morphogenesis The process in which a highly ordered sequence of patterning events generates the branched epithelial tubes of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. tmpzr1t_l9r_go_relaxed.owl lung branching morphogenesis biological_process owl:Class GO:0060765 biolink:NamedThing regulation of androgen receptor signaling pathway Any process that modulates the rate, frequency, or extent of the androgen receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of androgen receptor signalling pathway dph 2009-07-06T11:07:38Z biological_process owl:Class GO:0030521 biolink:NamedThing androgen receptor signaling pathway Any series of molecular signals generated as a consequence of an androgen binding to its receptor. tmpzr1t_l9r_go_relaxed.owl androgen receptor signalling pathway biological_process owl:Class GO:0007342 biolink:NamedThing fusion of sperm to egg plasma membrane involved in single fertilization The binding and fusion of a sperm, with the plasma membrane of the oocyte as part of the process of single fertilization. In sperm with flagella, binding occurs at the posterior (post-acrosomal) region of the sperm head. tmpzr1t_l9r_go_relaxed.owl sperm-oocyte fusion biological_process owl:Class GO:0072560 biolink:NamedThing type B pancreatic cell maturation A developmental process, independent of morphogenetic (shape) change, that is required for a type B pancreatic cell to attain its fully functional state. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic B cell maturation|pancreatic beta cell maturation These processes continue to 60 DPA in Gossypium spp. mah 2011-01-27T01:57:14Z biological_process owl:Class GO:0009654 biolink:NamedThing photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). tmpzr1t_l9r_go_relaxed.owl oxygen evolving complex|OEC (PSII) complex Wikipedia:Oxygen_evolving_complex cellular_component owl:Class GO:0009523 biolink:NamedThing photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Photosystem_II cellular_component owl:Class GO:0061458 biolink:NamedThing reproductive system development The progression of the reproductive system over time from its formation to the mature structure. The reproductive system consists of the organs that function in reproduction. tmpzr1t_l9r_go_relaxed.owl dph 2012-08-22T17:47:53Z biological_process owl:Class GO:1900159 biolink:NamedThing positive regulation of bone mineralization involved in bone maturation Any process that activates or increases the frequency, rate or extent of bone mineralization involved in bone maturation. tmpzr1t_l9r_go_relaxed.owl up-regulation of bone mineralization involved in bone maturation|up regulation of bone mineralization involved in bone maturation|activation of bone mineralization involved in bone maturation|upregulation of bone mineralization involved in bone maturation vk 2012-03-07T08:55:16Z biological_process owl:Class GO:0035630 biolink:NamedThing bone mineralization involved in bone maturation The deposition of hydroxyapatite, involved in the progression of the skeleton from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl Bone mineralization can also occur after a fracture and as a response to stress; in these cases, consider using the term 'bone mineralization ; GO:0030282'. bf 2010-12-20T01:57:31Z biological_process owl:Class GO:0010324 biolink:NamedThing membrane invagination The infolding of a membrane. tmpzr1t_l9r_go_relaxed.owl single-organism membrane invagination jl 2013-12-02T13:58:34Z GO:1902534 biological_process owl:Class GO:0043996 biolink:NamedThing histone acetyltransferase activity (H4-K8 specific) Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 8) = CoA + histone H4 N6-acetyl-L-lysine (position 8). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H4-K8 specific) molecular_function owl:Class GO:0043982 biolink:NamedThing histone H4-K8 acetylation The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 8 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 acetylation at K8 biological_process owl:Class GO:0070810 biolink:NamedThing positive regulation of Hulle cell development Any process that activates or increases the frequency, rate or extent of Hulle cell development, a process that leads to the formation of Hulle cells. Hulle cells are specialized multinucleate cells that originate from a nest-like aggregation of hyphae during sexual development and serve as nurse cells to the developing cleistothecium, or fruiting body. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:54:12Z biological_process owl:Class GO:0070792 biolink:NamedThing Hulle cell development The process whose specific outcome is the progression of Hulle cells over time, from their formation to the mature structures. Hulle cells are specialized multinucleate cells that originate from a nest-like aggregation of hyphae during sexual development and serve as nurse cells to the developing cleistothecium, or fruiting body. tmpzr1t_l9r_go_relaxed.owl Huelle cell development|Hulle cell formation mah 2009-07-08T02:54:30Z biological_process owl:Class GO:0051306 biolink:NamedThing mitotic sister chromatid separation The process in which sister chromatids are physically detached from each other during mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic sister chromatid resolution|sister chromatid separation during mitosis|mitotic chromosome separation|chromosome separation during mitosis biological_process owl:Class GO:0003968 biolink:NamedThing RNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. tmpzr1t_l9r_go_relaxed.owl ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|RNA-dependent RNA polymerase activity|RNA-dependent RNA replicase activity|ribonucleic acid-dependent ribonucleic acid polymerase activity|polymerase L|RNA-directed RNA polymerase activity|RNA replicase activity|ribonucleic acid replicase activity|PB1 proteins|transcriptase|RNA synthetase activity|phage f2 replicase|RNA-dependent ribonucleate nucleotidyltransferase activity|nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|Q-beta replicase activity|RDRP|ribonucleic replicase activity|PB2 proteins|RNA nucleotidyltransferase (RNA-directed) activity|3D polymerase activity|ribonucleic synthetase activity Reactome:R-HSA-9694605|Reactome:R-HSA-192916|Reactome:R-HSA-9685639|Reactome:R-HSA-9685681|Reactome:R-HSA-9694549|Reactome:R-HSA-9682563|EC:2.7.7.48|Reactome:R-HSA-168301|Reactome:R-HSA-192851|Reactome:R-HSA-9694506|Reactome:R-HSA-192624|Reactome:R-HSA-9694277|Reactome:R-HSA-9681674|Reactome:R-HSA-168280|Reactome:R-HSA-9694581|Reactome:R-HSA-9682465|Reactome:R-HSA-9694792|MetaCyc:RNA-DIRECTED-RNA-POLYMERASE-RXN|Reactome:R-HSA-9681840|Reactome:R-HSA-9694344|Reactome:R-HSA-9681651|Reactome:R-HSA-192832 molecular_function owl:Class GO:0060287 biolink:NamedThing epithelial cilium movement involved in determination of left/right asymmetry The movement of cilia of epithelial cells of the Left Right Organizer (LRO), also referred to as the node in mouse or the Kupffer's vesicle in zebrafish, resulting in the leftward fluid flow across the LRO and generation or transport of a signal which determines asymmetry in an organism's body plan with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl nodal cilium movement involved in determination of left/right asymmetry|cilium movement involved in determinationof L/R asymmetry|Kuppfer's vesicle cilium movement involved in determination of left/right asymmetry biological_process owl:Class GO:0007368 biolink:NamedThing determination of left/right symmetry The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. tmpzr1t_l9r_go_relaxed.owl determination of left/right asymmetry biological_process owl:Class GO:0086041 biolink:NamedThing voltage-gated potassium channel activity involved in SA node cell action potential depolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an SA node cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated potassium channel activity involved in sinus node cell action potential depolarization|voltage-gated potassium channel activity involved in SAN cell action potential depolarization|voltage-gated potassium channel activity involved in sinoatrial node cell action potential depolarization tb 2011-11-11T03:37:42Z molecular_function owl:Class GO:1903583 biolink:NamedThing positive regulation of basophil degranulation Any process that activates or increases the frequency, rate or extent of basophil degranulation. tmpzr1t_l9r_go_relaxed.owl up-regulation of basophil degranulation|activation of basophil degranulation|upregulation of basophil degranulation|up regulation of basophil degranulation sl 2014-10-31T17:37:42Z biological_process owl:Class GO:0060575 biolink:NamedThing intestinal epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell of the intestine. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-06T08:17:56Z biological_process owl:Class GO:0031561 biolink:NamedThing cellular bud tip polarisome Protein complex that has a role in determining cell polarity, found at the tip of a growing fungal bud. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005934 biolink:NamedThing cellular bud tip The end of a cellular bud distal to the site of attachment to the mother cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000345 biolink:NamedThing regulation of hepatocyte proliferation Any process that modulates the frequency, rate or extent of hepatocyte proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-03T10:27:15Z biological_process owl:Class GO:0072574 biolink:NamedThing hepatocyte proliferation The multiplication or reproduction of hepatocytes, resulting in the expansion of a cell population. Hepatocytes form the main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-02T03:34:49Z biological_process owl:Class GO:0001058 biolink:NamedThing RNA polymerase V activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase activity involved in transcription from RNA polymerase V promoter krc 2010-09-23T03:45:01Z molecular_function owl:Class GO:0061008 biolink:NamedThing hepaticobiliary system development The progression of the hepaticobiliary system over time, from its formation to the mature structure. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. tmpzr1t_l9r_go_relaxed.owl hepatobiliary system development dph 2010-01-22T09:11:59Z biological_process owl:Class GO:0048599 biolink:NamedThing oocyte development The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903104 biolink:NamedThing regulation of insulin receptor signaling pathway involved in determination of adult lifespan Any process that modulates the frequency, rate or extent of insulin receptor signaling pathway involved in determination of adult lifespan. tmpzr1t_l9r_go_relaxed.owl regulation of insulin receptor signalling pathway of determination of adult lifespan|regulation of insulin receptor signaling pathway of determination of adult lifespan|regulation of daf-2 receptor signaling pathway of determination of adult lifespan kmv 2014-06-05T20:56:06Z biological_process owl:Class GO:0140025 biolink:NamedThing contractile vacuole tethering involved in discharge The initial, indirect interaction between a contractile vacuole membrane and a site of discharge in the plasma membrane. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to docking and fusion. tmpzr1t_l9r_go_relaxed.owl contractile vacuole tethering to plasma membrane https://github.com/geneontology/go-ontology/issues/13407 pg 2017-05-02T09:50:10Z biological_process owl:Class GO:0070177 biolink:NamedThing contractile vacuole discharge The regulated release of water from a contractile vacuole to the outside of a cell by fusion of the contractile vacuole membrane with the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060943 biolink:NamedThing neural crest-derived cardiac fibroblast cell development The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation from a neural crest cell to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T02:31:24Z biological_process owl:Class GO:0015979 biolink:NamedThing photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Photosynthesis biological_process owl:Class GO:0008385 biolink:NamedThing IkappaB kinase complex A trimeric protein complex that phosphorylates inhibitory-kappaB (I-kappaB) proteins. The complex is composed of two kinase subunits (alpha and beta) and a regulatory gamma subunit (also called NEMO). In a resting state, NF-kappaB dimers are bound to inhibitory IKB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. tmpzr1t_l9r_go_relaxed.owl trimeric IKK complex|IKK complex|heterotrimeric IKK complex cellular_component owl:Class GO:0007292 biolink:NamedThing female gamete generation Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036462 biolink:NamedThing TRAIL-activated apoptotic signaling pathway An extrinsic apoptotic signaling pathway initiated by the binding of the ligand TRAIL (tumor necrosis factor-related apoptosis-inducing ligand) to a death receptor on the cell surface. tmpzr1t_l9r_go_relaxed.owl TRAIL-induced apoptotic signaling pathway|TRAIL-activated extrinsic apoptotic signaling pathway|tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway bf 2014-06-11T09:18:41Z biological_process owl:Class GO:0075036 biolink:NamedThing regulation of appressorium maturation Any process that modulates the frequency, rate or extent of symbiont appressorium maturation. tmpzr1t_l9r_go_relaxed.owl regulation of appressorium maturation on or near host|regulation of maturation of appressorium on or near host biological_process owl:Class GO:0090263 biolink:NamedThing positive regulation of canonical Wnt signaling pathway Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl positive regulation of catenin import into nucleus|positive regulation of canonical Wnt receptor signalling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin protein nuclear translocation|positive regulation of Wnt receptor signaling pathway through beta-catenin|positive regulation of canonical Wnt-activated signaling pathway tb 2010-02-03T04:32:16Z GO:0035413 biological_process owl:Class GO:0035379 biolink:NamedThing carbon dioxide transmembrane transporter activity Enables the transfer of carbon dioxide (CO2) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1237069|Reactome:R-HSA-1247649|Reactome:R-HSA-1247645|Reactome:R-HSA-1237042 bf 2010-03-18T11:19:38Z molecular_function owl:Class GO:0035378 biolink:NamedThing carbon dioxide transmembrane transport The process in which carbon dioxide (CO2) is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl carbon dioxide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-18T11:17:54Z biological_process owl:Class GO:0010102 biolink:NamedThing lateral root morphogenesis The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048527 biolink:NamedThing lateral root development The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098557 biolink:NamedThing cytoplasmic side of smooth endoplasmic reticulum membrane The side (leaflet) of the smooth endoplasmic reticulum membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:17:58Z cellular_component owl:Class GO:0030868 biolink:NamedThing smooth endoplasmic reticulum membrane The lipid bilayer surrounding the smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl SER membrane|smooth ER membrane NIF_Subcellular:sao1596955044 cellular_component owl:Class GO:1905798 biolink:NamedThing positive regulation of intraciliary anterograde transport Any process that activates or increases the frequency, rate or extent of intraciliary anterograde transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of intraflagellar anterograde transport|upregulation of intraciliary anterograde transport|upregulation of intraflagellar anterograde transport|activation of intraciliary anterograde transport|up-regulation of intraciliary anterograde transport|positive regulation of intraflagellar anterograde transport|activation of intraflagellar anterograde transport|up regulation of intraciliary anterograde transport|up regulation of intraflagellar anterograde transport hbye 2017-01-11T12:56:01Z biological_process owl:Class GO:0035720 biolink:NamedThing intraciliary anterograde transport The directed movement of large protein complexes along microtubules from the cell body toward the tip of a cilium (also called flagellum), mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl intraflagellar anterograde transport Note that we deem cilium and microtubule-based flagellum to be equivalent. bf 2011-03-07T11:24:53Z biological_process owl:Class GO:0021585 biolink:NamedThing pons structural organization The process that contributes to the act of creating the structural organization of the pons. This process pertains to the physical shaping of a rudimentary structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum. tmpzr1t_l9r_go_relaxed.owl pons structural organisation biological_process owl:Class GO:1901254 biolink:NamedThing positive regulation of intracellular transport of viral material Any process that activates or increases the frequency, rate or extent of intracellular transport of viral material. tmpzr1t_l9r_go_relaxed.owl up regulation of egress of virus within host cell|up regulation of viral egress|positive regulation of egress of virus within host cell|upregulation of movement of virus within host cell|up-regulation of egress of virus within host cell|positive regulation of movement of virus within host cell|upregulation of egress of virus within host cell|up-regulation of movement of virus within host cell|activation of egress of virus within host cell|activation of movement of virus within host cell|activation of viral egress|up-regulation of viral egress|positive regulation of viral egress|upregulation of viral egress|up regulation of movement of virus within host cell ss 2012-08-09T05:45:54Z biological_process owl:Class GO:0075733 biolink:NamedThing intracellular transport of virus The directed movement of a virus, or part of a virus, within the host cell. tmpzr1t_l9r_go_relaxed.owl intracellular transport of viral material|viral egress|viral genome transport in host cell|egress of virus within host cell|intracellular virion transport|movement of virus within host cell jl 2009-05-01T04:01:33Z GO:0046796|GO:0046788|GO:0046795 biological_process owl:Class GO:0042092 biolink:NamedThing type 2 immune response An immune response which is associated with resistance to extracellular organisms such as helminths and pathological conditions such as allergy, which is orchestrated by the production of particular cytokines, most notably IL-4, IL-5, IL-10, and IL-13, by any of a variety of cell types including T-helper 2 cells, eosinophils, basophils, mast cells, and nuocytes, resulting in enhanced production of certain antibody isotypes and other effects. tmpzr1t_l9r_go_relaxed.owl T-helper 2 type immune response|Th2 immune response biological_process owl:Class GO:0097091 biolink:NamedThing synaptic vesicle clustering The process that results in grouping synaptic vesicles in presynaptic structures. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/163 pr 2011-07-04T01:48:24Z biological_process owl:Class GO:0099504 biolink:NamedThing synaptic vesicle cycle A biological process in which synaptic vesicles are loaded with neurotransmitters, move to the active zone, exocytose and are then recycled via endocytosis, ultimately leading to reloading with neurotransmitters. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901712 biolink:NamedThing positive regulation of homoserine biosynthetic process Any process that activates or increases the frequency, rate or extent of homoserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of homoserine anabolism|activation of homoserine synthesis|up-regulation of homoserine synthesis|activation of homoserine formation|positive regulation of homoserine anabolism|upregulation of homoserine biosynthesis|up regulation of homoserine synthesis|upregulation of homoserine biosynthetic process|up regulation of homoserine biosynthetic process|upregulation of homoserine anabolism|up regulation of homoserine formation|up-regulation of homoserine biosynthesis|positive regulation of homoserine formation|up-regulation of homoserine formation|up-regulation of homoserine biosynthetic process|upregulation of homoserine formation|positive regulation of homoserine synthesis|upregulation of homoserine synthesis|up-regulation of homoserine anabolism|up regulation of homoserine biosynthesis|activation of homoserine biosynthesis|activation of homoserine anabolism|positive regulation of homoserine biosynthesis|activation of homoserine biosynthetic process mcc 2012-12-19T16:02:05Z biological_process owl:Class GO:0009090 biolink:NamedThing homoserine biosynthetic process The chemical reactions and pathways resulting in the formation of homoserine, alpha-amino-gamma-hydroxybutyric acid. tmpzr1t_l9r_go_relaxed.owl homoserine biosynthesis|homoserine anabolism|homoserine synthesis|homoserine formation MetaCyc:HOMOSERSYN-PWY biological_process owl:Class GO:0061213 biolink:NamedThing positive regulation of mesonephros development Any process that increases the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:39:35Z biological_process owl:Class GO:2001267 biolink:NamedThing regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of initiator caspase activity|regulation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway pr 2011-12-13T07:56:13Z biological_process owl:Class GO:0035047 biolink:NamedThing centrosomal and pronuclear rotation The rotation of centrosomes and associated pronuclei in one-cell embryos such as those of Caenorhabditis elegans, occurring as a transition between pronuclear migration and pronuclear fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007338 biolink:NamedThing single fertilization The union of male and female gametes to form a zygote. tmpzr1t_l9r_go_relaxed.owl zygote biosynthesis|zygote formation biological_process owl:Class GO:1905437 biolink:NamedThing positive regulation of histone H3-K4 trimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K4 trimethylation. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H3-K4 trimethylation|up-regulation of histone H3-K4 trimethylation|activation of histone H3-K4 trimethylation|upregulation of histone H3-K4 trimethylation hbye 2016-09-14T13:09:11Z biological_process owl:Class GO:0046817 biolink:NamedThing chemokine receptor antagonist activity Interacts with chemokine receptors to reduce the action of a chemokine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051452 biolink:NamedThing intracellular pH reduction Any process that reduces the internal pH of a cell, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl cell pH reduction|reduction of pH in cell|reduction of cellular pH|cellular acidification|intracellular acidification biological_process owl:Class GO:0003423 biolink:NamedThing growth plate cartilage chondrocyte division The process resulting in the oriented physical partitioning and separation of a chondrocytes in the growth plate. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T09:55:51Z biological_process owl:Class GO:0003419 biolink:NamedThing growth plate cartilage chondrocyte proliferation The multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T09:02:51Z biological_process owl:Class GO:0007436 biolink:NamedThing larval salivary gland morphogenesis The process, occurring in the larva, by which the anatomical structures of the salivary gland are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002168 biolink:NamedThing instar larval development The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075304 biolink:NamedThing negative regulation of basidiospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi basidiomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034295 biolink:NamedThing basidiospore formation The process in which spores form outside a specialized end cell known as a basidium. Basidia are characteristic of the basidiomycete fungi (phylum Basidiomycota), and give rise to spores that each contain a haploid nucleus that is the product of meiosis. The spores are usually attached to the basidium by short spikes called sterigmata (singular: sterigma). In most basidiomycetes there are four sterigmata (and four spores) to a basidium. tmpzr1t_l9r_go_relaxed.owl Note that basidiospores and basidia are separate biological structures. The basidium is the structure that bear the basidiospores, but the development of the basidium is a different process than the formation of the basidiospores themselves. For this reason, GO:0034295 basidiospore formation and GO:0075313 basidium development are different terms and are not linked. biological_process owl:Class GO:0060050 biolink:NamedThing positive regulation of protein glycosylation Any process that activates or increases the frequency, rate or extent of the glycosylation of one or more amino acid residues within a protein. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein amino acid glycosylation biological_process owl:Class GO:1904235 biolink:NamedThing regulation of substrate-dependent cell migration, cell attachment to substrate Any process that modulates the frequency, rate or extent of substrate-dependent cell migration, cell attachment to substrate. tmpzr1t_l9r_go_relaxed.owl regulation of substrate-bound cell migration, cell attachment to substrate pga 2015-05-15T13:29:59Z biological_process owl:Class GO:0098965 biolink:NamedThing extracellular matrix of synaptic cleft The portion of the extracellular matrix that lies within the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl synaptic cleft ECM|ECM of synaptic cleft cellular_component owl:Class GO:0099535 biolink:NamedThing synapse-associated extracellular matrix The extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl extra-synaptic extracellular matrix cellular_component owl:Class GO:0007394 biolink:NamedThing dorsal closure, elongation of leading edge cells The change in shape of cells at the dorsal-most (leading) edge of the epidermis from being polygonal to being elongated in the dorsal/ventral axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904994 biolink:NamedThing regulation of leukocyte adhesion to vascular endothelial cell Any process that modulates the frequency, rate or extent of leukocyte adhesion to vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl bc 2016-03-01T10:59:00Z biological_process owl:Class GO:0003437 biolink:NamedThing regulation of cell communication involved in growth plate cartilage morphogenesis Any process that modulates the frequency, rate or extent of cell communication that contributes to the shaping of the growth plate cartilage. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T01:34:24Z biological_process owl:Class GO:0045963 biolink:NamedThing negative regulation of dopamine metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine. tmpzr1t_l9r_go_relaxed.owl inhibition of dopamine metabolic process|down-regulation of dopamine metabolic process|down regulation of dopamine metabolic process|negative regulation of dopamine metabolism|downregulation of dopamine metabolic process biological_process owl:Class GO:0042417 biolink:NamedThing dopamine metabolic process The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline. tmpzr1t_l9r_go_relaxed.owl dopamine metabolism biological_process owl:Class GO:0086023 biolink:NamedThing adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process A series of molecular signals beginning with a G protein-coupled adrenergic cell surface receptor combining with epinephrine or norepinephrine, to activate adenylate cyclase, which contributes to a circulatory system process carried out by the heart. tmpzr1t_l9r_go_relaxed.owl adrenergic receptor signalling pathway involved in heart process|adrenergic receptor signaling pathway involved in heart process|beta-adrenergic receptor signalling pathway involved in heart process tb 2011-11-11T02:51:03Z biological_process owl:Class GO:2000307 biolink:NamedThing regulation of tumor necrosis factor (ligand) superfamily member 11 production Any process that modulates the frequency, rate or extent of tumor necrosis factor (ligand) superfamily member 11 production. tmpzr1t_l9r_go_relaxed.owl regulation of RANKL production|regulation of TNFSF11 production mah 2011-01-17T10:44:00Z biological_process owl:Class GO:0072535 biolink:NamedThing tumor necrosis factor (ligand) superfamily member 11 production The appearance of tumor necrosis factor superfamily member 11 (TNFSF11; RANKL) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TNFSF11 production|tumor necrosis factor ligand superfamily member 11 production|RANKL production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. mah 2011-01-14T01:42:23Z biological_process owl:Class GO:0030313 biolink:NamedThing cell envelope An envelope that surrounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_envelope cellular_component owl:Class GO:0004713 biolink:NamedThing protein tyrosine kinase activity Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl protein-tyrosine kinase activity Reactome:R-HSA-451942|Reactome:R-HSA-445091|Reactome:R-HSA-8848077|Reactome:R-HSA-982807|Reactome:R-HSA-8874080|Reactome:R-HSA-388833|Reactome:R-HSA-873924|Reactome:R-HSA-9673756|Reactome:R-HSA-8857555|Reactome:R-HSA-8848124|Reactome:R-HSA-1839112|Reactome:R-HSA-873922|Reactome:R-HSA-2023460|Reactome:R-HSA-2454239|RHEA:10596|Reactome:R-HSA-2730843|Reactome:R-HSA-202216|Reactome:R-HSA-2730884|Reactome:R-HSA-9706344|Reactome:R-HSA-389086|Reactome:R-HSA-2730862|Reactome:R-HSA-2671829|Reactome:R-HSA-191636|Reactome:R-HSA-909718|Reactome:R-HSA-2730851|Reactome:R-HSA-983709|Reactome:R-HSA-3928604|Reactome:R-HSA-171011|Reactome:R-HSA-9699578|Reactome:R-HSA-2395439|Reactome:R-HSA-2029984|Reactome:R-HSA-9012650|Reactome:R-HSA-452100|Reactome:R-HSA-8848776|Reactome:R-HSA-1251922|Reactome:R-HSA-5637795|Reactome:R-HSA-5655284|Reactome:R-HSA-5654634|Reactome:R-HSA-452122|Reactome:R-HSA-5654628|Reactome:R-HSA-9028728|Reactome:R-HSA-3928580|Reactome:R-HSA-879909|Reactome:R-HSA-182969|Reactome:R-HSA-8848818|Reactome:R-HSA-443817|Reactome:R-HSA-9613023|Reactome:R-HSA-9634390|Reactome:R-HSA-452097|Reactome:R-HSA-9672173|Reactome:R-HSA-9664261|Reactome:R-HSA-9604767|Reactome:R-HSA-202233|Reactome:R-HSA-2730882|Reactome:R-HSA-5683930|Reactome:R-HSA-5654655|Reactome:R-HSA-9026464|Reactome:R-HSA-5655341|Reactome:R-HSA-428888|Reactome:R-HSA-177937|Reactome:R-HSA-1839110|Reactome:R-HSA-5690702|Reactome:R-HSA-1250195|Reactome:R-HSA-2424486|Reactome:R-HSA-2424484|Reactome:R-HSA-429441|Reactome:R-HSA-1169421|Reactome:R-HSA-1250348|Reactome:R-HSA-202307|Reactome:R-HSA-8857577|Reactome:R-HSA-8848436|Reactome:R-HSA-9029151|Reactome:R-HSA-6790087|Reactome:R-HSA-388831|Reactome:R-HSA-210872|Reactome:R-HSA-5655301|Reactome:R-HSA-445084|Reactome:R-HSA-8857583|Reactome:R-HSA-9695834|Reactome:R-HSA-9026510|Reactome:R-HSA-9706350|Reactome:R-HSA-4093332|Reactome:R-HSA-1888198|Reactome:R-HSA-9625487|Reactome:R-HSA-1472121|Reactome:R-HSA-5621363|Reactome:R-HSA-9670412|Reactome:R-HSA-9665704|Reactome:R-HSA-2012087|Reactome:R-HSA-1839067|Reactome:R-HSA-9665705|Reactome:R-HSA-9664275|Reactome:R-HSA-3928610|Reactome:R-HSA-5655278|Reactome:R-HSA-3928594|Reactome:R-HSA-9018572|Reactome:R-HSA-389083|Reactome:R-HSA-9665389|Reactome:R-HSA-9672175|Reactome:R-HSA-2586555|Reactome:R-HSA-190429|Reactome:R-HSA-2201322|Reactome:R-HSA-8876948|Reactome:R-HSA-399947|Reactome:R-HSA-8937807|Reactome:R-HSA-9665709|Reactome:R-HSA-210291|Reactome:R-HSA-1307963|Reactome:R-HSA-2730860|Reactome:R-HSA-2029989|Reactome:R-HSA-374701|Reactome:R-HSA-5654147|Reactome:R-HSA-8948143|Reactome:R-HSA-183058|Reactome:R-HSA-8849042|Reactome:R-HSA-9034875|Reactome:R-HSA-389762|Reactome:R-HSA-1433542|Reactome:R-HSA-9027272|Reactome:R-HSA-1839098|Reactome:R-HSA-9666425|Reactome:R-HSA-2730858|Reactome:R-HSA-8874082|Reactome:R-HSA-909726|Reactome:R-HSA-4420206|Reactome:R-HSA-8964252|Reactome:R-HSA-2038387|Reactome:R-HSA-190385|Reactome:R-HSA-1524186|Reactome:R-HSA-9603420|Reactome:R-HSA-391866|Reactome:R-HSA-873919|Reactome:R-HSA-4420121|Reactome:R-HSA-2396594|Reactome:R-HSA-5654151|Reactome:R-HSA-9612085|Reactome:R-HSA-9026890|Reactome:R-HSA-5654578|Reactome:R-HSA-8851890|Reactome:R-HSA-5654653|Reactome:R-HSA-5655270|Reactome:R-HSA-2404199|Reactome:R-HSA-1225952|Reactome:R-HSA-190388|Reactome:R-HSA-1470009|Reactome:R-HSA-508282|Reactome:R-HSA-2029449|Reactome:R-HSA-2029453|Reactome:R-HSA-5654428|Reactome:R-HSA-6784319|Reactome:R-HSA-1295609|Reactome:R-HSA-9011241|Reactome:R-HSA-873918|Reactome:R-HSA-429449|Reactome:R-HSA-190408|Reactome:R-HSA-8875451|Reactome:R-HSA-69195|Reactome:R-HSA-5654631|Reactome:R-HSA-445085|Reactome:R-HSA-174164|Reactome:R-HSA-202291|Reactome:R-HSA-5654407|Reactome:R-HSA-9006332|Reactome:R-HSA-354073|Reactome:R-HSA-8848726|Reactome:R-HSA-6784006|Reactome:R-HSA-377640|Reactome:R-HSA-9027425|Reactome:R-HSA-5654397|Reactome:R-HSA-212710|Reactome:R-HSA-202168|Reactome:R-HSA-2033490|Reactome:R-HSA-202245|Reactome:R-HSA-3928627|Reactome:R-HSA-2033485|Reactome:R-HSA-373750|Reactome:R-HSA-2012073|Reactome:R-HSA-9024726|Reactome:R-HSA-419646|Reactome:R-HSA-2424487|Reactome:R-HSA-1433454|Reactome:R-HSA-8875817|Reactome:R-HSA-202174|Reactome:R-HSA-1433488|Reactome:R-HSA-373747|Reactome:R-HSA-8942607|Reactome:R-HSA-434836|Reactome:R-HSA-202165|Reactome:R-HSA-9027273|Reactome:R-HSA-8956659|Reactome:R-HSA-9034814|Reactome:R-HSA-2395801|Reactome:R-HSA-8848758|Reactome:R-HSA-432129|Reactome:R-HSA-3928583|Reactome:R-HSA-418859|Reactome:R-HSA-2012082|Reactome:R-HSA-8857925|Reactome:R-HSA-4420117|Reactome:R-HSA-5357429|Reactome:R-HSA-9606159|Reactome:R-HSA-205289|Reactome:R-HSA-9669890|Reactome:R-HSA-177930|Reactome:R-HSA-2197698|Reactome:R-HSA-2586553|Reactome:R-HSA-170070|Reactome:R-HSA-8983872|Reactome:R-HSA-5637796|Reactome:R-HSA-1963586|Reactome:R-HSA-9032532|Reactome:R-HSA-5654545|Reactome:R-HSA-9606162|Reactome:R-HSA-5654418|Reactome:R-HSA-8849032|Reactome:R-HSA-9034714|Reactome:R-HSA-5218830|Reactome:R-HSA-8853315|Reactome:R-HSA-177934|Reactome:R-HSA-445076|Reactome:R-HSA-909730|Reactome:R-HSA-2033486|Reactome:R-HSA-909729|Reactome:R-HSA-2730886|Reactome:R-HSA-68954|Reactome:R-HSA-5655268|Reactome:R-HSA-8876230|Reactome:R-HSA-9032854|Reactome:R-HSA-1248655|Reactome:R-HSA-9698005|Reactome:R-HSA-354124|Reactome:R-HSA-8848606|Reactome:R-HSA-5218851|Reactome:R-HSA-2029268|Reactome:R-HSA-190413|Reactome:R-HSA-9664278|Reactome:R-HSA-2033488|Reactome:R-HSA-2730833|Reactome:R-HSA-8853313|Reactome:R-HSA-1839065|Reactome:R-HSA-8849463|Reactome:R-HSA-5218806|Reactome:R-HSA-9665032|Reactome:R-HSA-389354|Reactome:R-HSA-9606163|Reactome:R-HSA-9032601|Reactome:R-HSA-912629|Reactome:R-HSA-391871|Reactome:R-HSA-9021609|Reactome:R-HSA-5218642|Reactome:R-HSA-5654607|Reactome:R-HSA-2038944|Reactome:R-HSA-1982066|Reactome:R-HSA-391156|Reactome:R-HSA-5654149|Reactome:R-HSA-5621370|Reactome:R-HSA-112333|Reactome:R-HSA-6806974|Reactome:R-HSA-2023455|Reactome:R-HSA-202248|Reactome:R-HSA-1168394|Reactome:R-HSA-4420128|Reactome:R-HSA-9032426|Reactome:R-HSA-2730888|Reactome:R-HSA-186786|Reactome:R-HSA-9664976|Reactome:R-HSA-190427|Reactome:R-HSA-8874078|Reactome:R-HSA-1433418|Reactome:R-HSA-5655243|Reactome:R-HSA-8855237|Reactome:R-HSA-9664588|Reactome:R-HSA-1963581|Reactome:R-HSA-9703437|Reactome:R-HSA-399934|Reactome:R-HSA-2130194|Reactome:R-HSA-8849068|Reactome:R-HSA-909732|Reactome:R-HSA-2671742|Reactome:R-HSA-3928578|Reactome:R-HSA-5621355|Reactome:R-HSA-8876246|Reactome:R-HSA-418872|Reactome:R-HSA-1433506|Reactome:R-HSA-5686587|Reactome:R-HSA-5654587|Reactome:R-HSA-8867041|Reactome:R-HSA-2454208|Reactome:R-HSA-5654222|Reactome:R-HSA-1671691|Reactome:R-HSA-8851933|Reactome:R-HSA-8964242|Reactome:R-HSA-9006323|Reactome:R-HSA-372693|Reactome:R-HSA-391865|Reactome:R-HSA-1248694|Reactome:R-HSA-8849102|Reactome:R-HSA-1963582|Reactome:R-HSA-9026579|Reactome:R-HSA-170991|Reactome:R-HSA-9665411|Reactome:R-HSA-983707|Reactome:R-HSA-5218812|Reactome:R-HSA-399946|Reactome:R-HSA-9673761|Reactome:R-HSA-9029155|Reactome:R-HSA-5218828|Reactome:R-HSA-1247844|Reactome:R-HSA-3215391|Reactome:R-HSA-9680248|Reactome:R-HSA-5607745|Reactome:R-HSA-2428926|Reactome:R-HSA-8848005|Reactome:R-HSA-8853325|Reactome:R-HSA-5654582|Reactome:R-HSA-3928648|Reactome:R-HSA-5624486|Reactome:R-HSA-2395412|Reactome:R-HSA-418163|Reactome:R-HSA-5218809|Reactome:R-HSA-879925|Reactome:R-HSA-2404193|Reactome:R-HSA-9670418|Reactome:R-HSA-8937844|Reactome:R-HSA-114600|Reactome:R-HSA-380780|Reactome:R-HSA-170156|Reactome:R-HSA-5654408|Reactome:R-HSA-5654575|Reactome:R-HSA-983703|Reactome:R-HSA-9026502|Reactome:R-HSA-2029459|Reactome:R-HSA-5218820|Reactome:R-HSA-8937728|Reactome:R-HSA-1250315|Reactome:R-HSA-9033284|Reactome:R-HSA-9037040|Reactome:R-HSA-191062|Reactome:R-HSA-9612996|Reactome:R-HSA-9698003|Reactome:R-HSA-190326|Reactome:R-HSA-8853309|Reactome:R-HSA-8847977|Reactome:R-HSA-5607750|Reactome:R-HSA-879907|Reactome:R-HSA-9703438|Reactome:R-HSA-1295540|Reactome:R-HSA-8848873|Reactome:R-HSA-9669911|Reactome:R-HSA-1225960|Reactome:R-HSA-8848975|Reactome:R-HSA-5218640|Reactome:R-HSA-5654605|Reactome:R-HSA-2671850 GO:0004718 molecular_function owl:Class GO:0044853 biolink:NamedThing plasma membrane raft A membrane raft that is part of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T15:55:23Z cellular_component owl:Class GO:0051714 biolink:NamedThing positive regulation of cytolysis in other organism Any process that activates or increases the frequency, rate or extent of the cytolysis by an organism of cells in another organism. tmpzr1t_l9r_go_relaxed.owl stimulation of cytolysis of cells of another organism|activation of cytolysis of cells of another organism|up regulation of cytolysis of cells of another organism|up-regulation of cytolysis of cells of another organism|upregulation of cytolysis of cells of another organism|positive regulation of cytolysis of cells of another organism|positive regulation of cytolysis of cells of another, non-host, organism GO:0001904 biological_process owl:Class GO:0051715 biolink:NamedThing cytolysis in other organism The killing by an organism of a cell in another organism by means of the rupture of cell membranes and the loss of cytoplasm. tmpzr1t_l9r_go_relaxed.owl cytolysis of cells of another organism|cytolysis of cells of another, non-host, organism|cytolysis of cells of competing organism GO:0001901 biological_process owl:Class GO:0071619 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain serine 2 residues The process of introducing a phosphate group onto a serine residue at position 2 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 2 (Ser2) occurs subsequent to phosphorylation of serine 5 and is thus seen in the middle and 3' ends of genes. In vivo, Ser2 phosphorylation is primarily performed by CTDK-I in S. cerevisiae or CDK9 in metazoans. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T02:37:02Z biological_process owl:Class GO:0002184 biolink:NamedThing cytoplasmic translational termination The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-09T03:17:13Z biological_process owl:Class GO:0072246 biolink:NamedThing metanephric glomerular parietal epithelial cell development The process whose specific outcome is the progression of a metanephric glomerular parietal epithelial cell over time, from its formation to the mature structure. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl metanephric Bowman's capsule development mah 2010-03-19T03:42:13Z biological_process owl:Class GO:0072245 biolink:NamedThing metanephric glomerular parietal epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a metanephric glomerular parietal epithelial cell. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:41:26Z biological_process owl:Class GO:0006859 biolink:NamedThing extracellular carbohydrate transport The directed extracellular movement of carbohydrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005576 biolink:NamedThing extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. tmpzr1t_l9r_go_relaxed.owl extracellular Wikipedia:Extracellular Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'. cellular_component owl:Class GO:0032157 biolink:NamedThing prospore contractile ring A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane of the prospore envelope in meiotic cells in preparation for completing cytokinesis. tmpzr1t_l9r_go_relaxed.owl meiotic contractile ring|cytokinetic ring|actomyosin ring cellular_component owl:Class GO:0042764 biolink:NamedThing ascospore-type prospore An immature spore undergoing development. The spore usually consists of nucleic acid, prospore membrane(s) that encase the nucleic acid, and ultimately a cell wall that covers the membrane(s). This type of spore is observed in ascospore-forming fungi. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044493 biolink:NamedThing envenomation resulting in negative regulation of voltage-gated sodium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction of the activity of a voltage-gated sodium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T01:26:59Z biological_process owl:Class GO:2000866 biolink:NamedThing positive regulation of estradiol secretion Any process that activates or increases the frequency, rate or extent of estradiol secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of oestradiol secretion bf 2011-07-26T08:49:20Z biological_process owl:Class GO:0010227 biolink:NamedThing floral organ abscission The controlled shedding of floral organs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905902 biolink:NamedThing regulation of mesoderm formation Any process that modulates the frequency, rate or extent of mesoderm formation. tmpzr1t_l9r_go_relaxed.owl rph 2017-02-03T12:28:20Z biological_process owl:Class GO:1903525 biolink:NamedThing regulation of membrane tubulation Any process that modulates the frequency, rate or extent of membrane tubulation. tmpzr1t_l9r_go_relaxed.owl regulation of vesicle scission|regulation of plasma membrane tubulation pm 2014-10-07T12:52:36Z biological_process owl:Class GO:0097320 biolink:NamedThing plasma membrane tubulation A membrane tubulation process occurring in a plasma membrane. tmpzr1t_l9r_go_relaxed.owl membrane tubulation|vesicle scission pr 2012-05-31T10:01:22Z biological_process owl:Class GO:1904212 biolink:NamedThing regulation of iodide transmembrane transport Any process that modulates the frequency, rate or extent of iodide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-14T19:00:02Z biological_process owl:Class GO:1904200 biolink:NamedThing iodide transmembrane transport The process in which iodide is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-08T15:17:19Z biological_process owl:Class GO:0006288 biolink:NamedThing base-excision repair, DNA ligation The ligation by DNA ligase of DNA strands. Ligation occurs after polymerase action to fill the gap left by the action of endonucleases during base-excision repair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006284 biolink:NamedThing base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. tmpzr1t_l9r_go_relaxed.owl BER Wikipedia:Base_excision_repair biological_process owl:Class GO:1905356 biolink:NamedThing regulation of snRNA pseudouridine synthesis Any process that modulates the frequency, rate or extent of snRNA pseudouridine synthesis. tmpzr1t_l9r_go_relaxed.owl se 2016-08-09T19:12:27Z biological_process owl:Class GO:0031120 biolink:NamedThing snRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990476 biolink:NamedThing synaptic vesicle, resting pool A synaptic vesicle belonging to the pool that remain unreleased even after prolonged stimulation causes a saturating degree of vesicular turnover. 50-80% of the total number of synaptic vesicles at a resting terminal bouton are in this pool. tmpzr1t_l9r_go_relaxed.owl resting pool of synaptic vesicles|reserve pool of synaptic vesicles pr 2014-09-02T09:12:37Z cellular_component owl:Class GO:0043195 biolink:NamedThing terminal bouton Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it. tmpzr1t_l9r_go_relaxed.owl presynaptic bouton|bouton|synaptic bouton|terminal button NIF_Subcellular:sao187426937 cellular_component owl:Class GO:2000012 biolink:NamedThing regulation of auxin polar transport Any process that modulates the frequency, rate or extent of auxin polar transport. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:21:09Z biological_process owl:Class GO:0009926 biolink:NamedThing auxin polar transport The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900071 biolink:NamedThing regulation of sulfite transport Any process that modulates the frequency, rate or extent of sulfite transport. tmpzr1t_l9r_go_relaxed.owl regulation of sulphite transport dph 2012-01-26T08:41:10Z biological_process owl:Class GO:0000316 biolink:NamedThing sulfite transport The directed movement of sulfite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sulphite transport biological_process owl:Class GO:1901249 biolink:NamedThing regulation of lung goblet cell differentiation Any process that modulates the frequency, rate or extent of lung goblet cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of pulmonary goblet cell differentiation vk 2012-08-08T08:59:12Z biological_process owl:Class GO:0060480 biolink:NamedThing lung goblet cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a lung goblet cell. A goblet cell is a cell of the epithelial lining that produces and secretes mucins. tmpzr1t_l9r_go_relaxed.owl pulmonary goblet cell differentiation biological_process owl:Class GO:0048655 biolink:NamedThing anther wall tapetum morphogenesis The process in which the anatomical structures of the anther wall tapetum are generated and organized. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. tmpzr1t_l9r_go_relaxed.owl tapetal layer morphogenesis|tapetum morphogenesis|differentiation of tapetal layer biological_process owl:Class GO:0060809 biolink:NamedThing mesodermal to mesenchymal transition involved in gastrulation The epithelial to mesenchymal transition process in which a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-06T02:42:09Z biological_process owl:Class GO:0007453 biolink:NamedThing clypeo-labral disc morphogenesis The process in which the anatomical structures derived from the clypeo-labral disc are generated and organized. This includes the transformation of a clypeo-labal imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the labrum, anterior and posterior cibarial plates, fish trap bristles, epistomal sclerite and clypeus. tmpzr1t_l9r_go_relaxed.owl morphogenesis of structures derived from the clypeo-labral disc|clypeo-labral disc metamorphosis biological_process owl:Class GO:0035213 biolink:NamedThing clypeo-labral disc development The process whose specific outcome is the progression of the clypeo-labral disc over time, from its formation to the metamorphosis to form adult structures. The clypeo-labral disc develops into the labrum, anterior cibarial plate, fish trap bristles, epistomal sclerite. tmpzr1t_l9r_go_relaxed.owl development of structures derived from the clypeo-labral disc biological_process owl:Class GO:0090376 biolink:NamedThing seed trichome differentiation The process in which a relatively unspecialized epidermal cell acquires the specialized features of a seed trichome. A seed trichome is a trichome that develops from seed coat epidermis and is often long with putative dispersal function. tmpzr1t_l9r_go_relaxed.owl cotton fiber development|seed hair differentiation|seed trichome development tb 2010-09-15T02:07:10Z biological_process owl:Class GO:1903051 biolink:NamedThing negative regulation of proteolysis involved in cellular protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of proteolysis involved in cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of proteolysis during cellular protein catabolism|down-regulation of peptidolysis involved in cellular protein catabolism|down regulation of proteolysis involved in cellular protein catabolic process|downregulation of peptidolysis involved in cellular protein catabolic process|inhibition of proteolysis during cellular protein catabolic process|negative regulation of peptidolysis during cellular protein catabolism|inhibition of peptidolysis during cellular protein catabolic process|down-regulation of proteolysis during cellular protein catabolic process|inhibition of peptidolysis during cellular protein catabolism|down-regulation of peptidolysis during cellular protein catabolic process|down regulation of peptidolysis during cellular protein catabolism|downregulation of peptidolysis during cellular protein catabolism|down regulation of proteolysis during cellular protein catabolic process|negative regulation of peptidolysis involved in cellular protein catabolic process|negative regulation of peptidolysis during cellular protein catabolic process|negative regulation of peptidolysis involved in cellular protein catabolism|downregulation of proteolysis involved in cellular protein catabolic process|down-regulation of proteolysis during cellular protein catabolism|down-regulation of peptidolysis during cellular protein catabolism|inhibition of peptidolysis involved in cellular protein catabolic process|downregulation of proteolysis during cellular protein catabolic process|inhibition of peptidolysis involved in cellular protein catabolism|inhibition of proteolysis during cellular protein catabolism|down regulation of peptidolysis during cellular protein catabolic process|downregulation of peptidolysis involved in cellular protein catabolism|down-regulation of proteolysis involved in cellular protein catabolic process|negative regulation of proteolysis during cellular protein catabolic process|down-regulation of peptidolysis involved in cellular protein catabolic process|down regulation of proteolysis during cellular protein catabolism|down regulation of peptidolysis involved in cellular protein catabolic process|negative regulation of proteolysis during cellular protein catabolism|downregulation of peptidolysis during cellular protein catabolic process|inhibition of proteolysis involved in cellular protein catabolic process|down regulation of peptidolysis involved in cellular protein catabolism Overexpression of cathepsin C propeptide significantly increased the degradation of intestinal alkaline phosphatase (IAP). rl 2014-05-22T18:00:51Z biological_process owl:Class GO:0098890 biolink:NamedThing extrinsic component of postsynaptic membrane The component of the postsynaptic membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045211 biolink:NamedThing postsynaptic membrane A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl post-synaptic membrane cellular_component owl:Class GO:1901330 biolink:NamedThing negative regulation of odontoblast differentiation Any process that stops, prevents or reduces the frequency, rate or extent of odontoblast differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of odontoblast differentiation|down-regulation of odontoblast differentiation|down regulation of odontoblast differentiation|inhibition of odontoblast differentiation hjd 2012-08-31T16:50:27Z biological_process owl:Class GO:0071895 biolink:NamedThing odontoblast differentiation The process in which a relatively unspecialized cell of neural crest origin acquires the specialized features of an odontoblast, a cell on the outer surface of the dental pulp whose biological function is the creation of dentin. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-14T04:00:40Z biological_process owl:Class GO:0061152 biolink:NamedThing trachea submucosa development The progression of the trachea submucosa over time from its formation to the mature structure. The trachea submucosa is made up of the glands and elastic tissue that lie under the mucosa in the trachea. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-07T09:58:40Z biological_process owl:Class GO:0060438 biolink:NamedThing trachea development The process whose specific outcome is the progression of a trachea over time, from its formation to the mature structure. The trachea is the portion of the airway that attaches to the bronchi as it branches. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061620 biolink:NamedThing glycolytic process through glucose-6-phosphate The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, occurring through a glucose-6-phosphate intermediate, with the concomitant production of a small amount of ATP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:GLYCOLYSIS dph 2014-04-14T09:17:48Z biological_process owl:Class GO:0004347 biolink:NamedThing glucose-6-phosphate isomerase activity Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoglucoisomerase activity|D-glucose-6-phosphate ketol-isomerase activity|phosphosaccharomutase activity|phosphohexomutase activity|hexose monophosphate isomerase activity|D-glucose-6-phosphate aldose-ketose-isomerase activity|phosphohexoisomerase activity|hexosephosphate isomerase activity|oxoisomerase activity|phosphohexose isomerase activity|glucose phosphate isomerase activity|hexose phosphate isomerase activity|phosphoglucose isomerase activity MetaCyc:PGLUCISOM-RXN|Reactome:R-HSA-70471|EC:5.3.1.9|RHEA:11816|Reactome:R-HSA-70475 molecular_function owl:Class GO:0070935 biolink:NamedThing 3'-UTR-mediated mRNA stabilization An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA. tmpzr1t_l9r_go_relaxed.owl 3'-untranslated region-mediated mRNA stabilization mah 2009-09-21T03:08:20Z biological_process owl:Class GO:1990600 biolink:NamedThing single-stranded DNA endodeoxyribonuclease activator activity Increases the activity of a single-stranded DNA endodeoxyribonuclease activator activity. tmpzr1t_l9r_go_relaxed.owl al 2015-01-06T15:35:36Z molecular_function owl:Class GO:0032436 biolink:NamedThing positive regulation of proteasomal ubiquitin-dependent protein catabolic process Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl upregulation of proteasomal ubiquitin-dependent protein catabolic process|stimulation of proteasomal ubiquitin-dependent protein catabolic process|up regulation of proteasomal ubiquitin-dependent protein catabolic process|activation of proteasomal ubiquitin-dependent protein catabolic process|up-regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process owl:Class GO:0060822 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in axial mesodermal cell fate specification The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of an axial mesodermal fate. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in axial mesodermal cell fate specification dph 2009-08-11T12:55:33Z biological_process owl:Class GO:0048327 biolink:NamedThing axial mesodermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into an axial mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl axial mesoderm cell fate specification biological_process owl:Class GO:0048448 biolink:NamedThing stamen morphogenesis The process in which the anatomical structures of the stamen are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048426 biological_process owl:Class GO:0110059 biolink:NamedThing negative regulation of blood vessel endothelial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of blood vessel endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-23T14:47:29Z biological_process owl:Class GO:0060837 biolink:NamedThing blood vessel endothelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell, a thin flattened cell that lines the inside surfaces of blood vessels. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T03:47:36Z biological_process owl:Class GO:0075025 biolink:NamedThing initiation of appressorium formation The process in which a relatively unspecialized cell starts to acquire specialized features of the symbiont appressorium to aid in infection of the host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl appressorium initiation on or near host|initiation of appressorium on or near host|initiation of symbiont appressorium on or near host|initiation of appressorium by symbiont on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0004535 biolink:NamedThing poly(A)-specific ribonuclease activity Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. tmpzr1t_l9r_go_relaxed.owl 3'-exoribonuclease activity|2',3'-exoribonuclease activity|poly(A)-specific RNase activity Reactome:R-HSA-429992|EC:3.1.13.4|Reactome:R-HSA-429955|Reactome:R-HSA-430021|MetaCyc:3.1.13.4-RXN molecular_function owl:Class GO:0048090 biolink:NamedThing negative regulation of female pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in females. tmpzr1t_l9r_go_relaxed.owl down-regulation of female pigmentation|down regulation of female pigmentation|inhibition of female pigmentation|downregulation of female pigmentation biological_process owl:Class GO:0048095 biolink:NamedThing female pigmentation Establishment of a pattern of pigment in females. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904088 biolink:NamedThing positive regulation of epiboly involved in gastrulation with mouth forming second Any process that activates or increases the frequency, rate or extent of epiboly involved in gastrulation with mouth forming second. tmpzr1t_l9r_go_relaxed.owl activation of epiboly involved in gastrulation with mouth forming second|upregulation of epiboly involved in gastrulation with mouth forming second|up regulation of epiboly involved in gastrulation with mouth forming second|up-regulation of epiboly involved in gastrulation with mouth forming second dos 2015-03-25T11:17:47Z biological_process owl:Class GO:0055113 biolink:NamedThing epiboly involved in gastrulation with mouth forming second The expansion of one cell sheet over other cells involved in deuterostomic gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048493 biolink:NamedThing plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex A complex, located in the plasma membrane-derived thylakoid, containing either both large and small subunits or just small subunits. It carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl ribulose bisphosphate carboxylase complex|RubisCO complex|plasma membrane ribulose bisphosphate carboxylase complex cellular_component owl:Class GO:0030075 biolink:NamedThing bacterial thylakoid A thylakoid that is derived from and attached to, but not necessarily continuous with, the plasma membrane, and is not enclosed in a plastid. It bears the photosynthetic pigments in photosynthetic cyanobacteria. tmpzr1t_l9r_go_relaxed.owl plasma membrane-derived thylakoid cellular_component owl:Class GO:1990780 biolink:NamedThing cytoplasmic side of dendritic spine plasma membrane The leaflet of the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface surrounding a dendritic spine. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T18:35:39Z cellular_component owl:Class GO:0032591 biolink:NamedThing dendritic spine membrane The portion of the plasma membrane surrounding a dendritic spine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042701 biolink:NamedThing progesterone secretion The regulated release of progesterone, a steroid hormone, by the corpus luteum of the ovary and by the placenta. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902412 biolink:NamedThing regulation of mitotic cytokinesis Any process that modulates the frequency, rate or extent of mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of cytokinesis after mitosis jl 2013-09-12T14:11:49Z biological_process owl:Class GO:0021732 biolink:NamedThing midbrain-hindbrain boundary maturation A developmental process, independent of morphogenetic (shape) change, that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl isthmus maturation|MHB maturation biological_process owl:Class GO:0034446 biolink:NamedThing substrate adhesion-dependent cell spreading The morphogenetic process that results in flattening of a cell as a consequence of its adhesion to a substrate. tmpzr1t_l9r_go_relaxed.owl cell spreading during cell substrate adhesion|substrate adhesion dependent cell spreading biological_process owl:Class GO:1903774 biolink:NamedThing positive regulation of viral budding via host ESCRT complex Any process that activates or increases the frequency, rate or extent of viral budding via host ESCRT complex. tmpzr1t_l9r_go_relaxed.owl up regulation of viral budding via host ESCRT complex|up regulation of viral budding through the ESCRT machinery|up-regulation of viral budding through the ESCRT machinery|up-regulation of viral budding via host ESCRT complex|upregulation of viral budding via host ESCRT complex|positive regulation of viral budding through the ESCRT machinery|activation of viral budding through the ESCRT machinery|upregulation of viral budding through the ESCRT machinery|activation of viral budding via host ESCRT complex als 2015-01-06T16:21:02Z biological_process owl:Class GO:0039702 biolink:NamedThing viral budding via host ESCRT complex Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process. tmpzr1t_l9r_go_relaxed.owl host-assisted viral budding|viral budding through the ESCRT machinery VZ:1536 bf 2013-11-06T16:51:53Z biological_process owl:Class GO:0021694 biolink:NamedThing cerebellar Purkinje cell layer formation The process that gives rise to the cerebellar Purkinje cell layer. This process pertains to the initial formation of a structure from unspecified parts. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031603 biolink:NamedThing cytosolic proteasome core complex The core complex of a proteasome located in the cytosol of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061146 biolink:NamedThing Peyer's patch morphogenesis The process in which a Peyer's patch is generated and organized. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-26T06:46:23Z biological_process owl:Class GO:0048541 biolink:NamedThing Peyer's patch development The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes. tmpzr1t_l9r_go_relaxed.owl gut-associated lymphoid tissue development|GALT development biological_process owl:Class GO:0035167 biolink:NamedThing larval lymph gland hemopoiesis The production of blood cells from the larval lymph gland. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. tmpzr1t_l9r_go_relaxed.owl larval lymph gland haematopoiesis|larval lymph gland hematopoiesis|larval lymph gland haemopoiesis biological_process owl:Class GO:0048542 biolink:NamedThing lymph gland development The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is one of the sites of hemocyte differentiation. It consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. tmpzr1t_l9r_go_relaxed.owl hematopoietic organ development|hemopoietic organ development|haematopoietic organ development|haemopoietic organ development biological_process owl:Class GO:2000555 biolink:NamedThing negative regulation of T-helper 1 cell cytokine production Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 1 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl negative regulation of Th1 cell cytokine production ebc 2011-04-03T07:35:51Z biological_process owl:Class GO:0035744 biolink:NamedThing T-helper 1 cell cytokine production Any process that contributes to cytokine production by a T-helper 1 cell. tmpzr1t_l9r_go_relaxed.owl Th1 cell cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2011-03-17T02:22:54Z biological_process owl:Class GO:1904281 biolink:NamedThing positive regulation of transcription by RNA polymerase V Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase V. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription from RNA polymerase V promoter|positive regulation of transcription from RNA pol V promoter|activation of transcription from RNA pol V promoter|upregulation of transcription from RNA pol V promoter|activation of transcription from RNA polymerase V promoter|positive regulation of transcription from RNA polymerase V promoter|upregulation of transcription from RNA polymerase V promoter|up-regulation of transcription from RNA pol V promoter|up regulation of transcription from RNA polymerase V promoter|up regulation of transcription from RNA pol V promoter tb 2015-06-03T22:02:00Z biological_process owl:Class GO:0001060 biolink:NamedThing transcription by RNA polymerase V The synthesis of RNA from a DNA template by RNA polymerase V, originating at a Pol V-specific promoter. tmpzr1t_l9r_go_relaxed.owl transcription from RNA pol V promoter|transcription from RNA polymerase V promoter https://github.com/geneontology/go-ontology/issues/14854 krc 2010-09-23T03:54:04Z biological_process owl:Class GO:0019767 biolink:NamedThing IgE receptor activity Combining with an immunoglobulin of the IgE isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019863 biolink:NamedThing IgE binding Binding to an immunoglobulin of the IgE isotype. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035432 biolink:NamedThing positive regulation of gluconate transmembrane transport Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of gluconate transport|up regulation of gluconate transport|induction of gluconate transport|activation of gluconate transport|positive regulation of gluconate transport|positive regulation of gluconate membrane transport|upregulation of gluconate transport|up-regulation of gluconate transport bf 2010-04-08T10:39:58Z GO:0032895 biological_process owl:Class GO:0035429 biolink:NamedThing gluconate transmembrane transport The process in which gluconate is transported across a membrane. Gluconate is the aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl gluconate membrane transport|gluconate transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T10:33:46Z GO:0015725 biological_process owl:Class GO:0032929 biolink:NamedThing negative regulation of superoxide anion generation Any process that stops, prevents, or reduces the frequency, rate or extent of enzymatic generation of superoxide by a cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of superoxide release|down-regulation of superoxide release|downregulation of superoxide release|inhibition of superoxide release|down regulation of superoxide release biological_process owl:Class GO:0042554 biolink:NamedThing superoxide anion generation The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways. tmpzr1t_l9r_go_relaxed.owl superoxide release biological_process owl:Class GO:0002524 biolink:NamedThing hypersensitivity An inflammatory response to an exogenous environmental antigen or an endogenous antigen initiated by the adaptive immune system. tmpzr1t_l9r_go_relaxed.owl hypersensitivity response Wikipedia:Hypersensitivity biological_process owl:Class GO:0008987 biolink:NamedThing quinolinate synthetase A activity Catalysis of the reaction: iminoaspartate + dihydroxy-acetone-phosphate = quinolinate + 2 H2O + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:25888|MetaCyc:QUINOLINATE-SYNTHA-RXN molecular_function owl:Class GO:0019805 biolink:NamedThing quinolinate biosynthetic process The chemical reactions and pathways resulting in the formation of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. tmpzr1t_l9r_go_relaxed.owl quinolinate formation|quinolinate anabolism|quinolinate biosynthesis|quinolinate synthesis biological_process owl:Class GO:0072151 biolink:NamedThing mesangial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesangial cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:11:13Z biological_process owl:Class GO:1904733 biolink:NamedThing negative regulation of electron transfer activity Any process that stops, prevents or reduces the frequency, rate or extent of electron transfer activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of thioredoxin-like 2Fe-2S ferredoxin|down regulation of electron transfer flavoprotein, group I|negative regulation of polyferredoxin|down-regulation of electron donor activity|negative regulation of electron transfer flavoprotein, group I|down regulation of 3Fe-4S/4Fe-4S electron transfer carrier|down regulation of chloroplast-type ferredoxin|inhibition of amicyanin|down-regulation of amicyanin|inhibition of electron transfer flavoprotein, group I|downregulation of copper electron carrier|negative regulation of azurin|down regulation of rubredoxin|negative regulation of redox-active disulfide bond electron carrier|negative regulation of iron-sulfur electron transfer carrier|down regulation of adrenodoxin-type ferredoxin|down regulation of redox-active disulfide bond electron carrier|downregulation of electron carrier activity|downregulation of electron transfer flavoprotein|negative regulation of electron acceptor activity|down regulation of electron transfer flavoprotein, group II|inhibition of electron transfer flavoprotein, group II|inhibition of copper electron carrier|down regulation of monocluster bacterial-type ferredoxin|down regulation of polyferredoxin|downregulation of high-potential iron-sulfur carrier|downregulation of amicyanin|down regulation of electron donor activity|down-regulation of iron-sulfur electron transfer carrier|inhibition of high-potential iron-sulfur carrier|downregulation of chloroplast-type ferredoxin|downregulation of bacterial-type ferredoxin|inhibition of monocluster bacterial-type ferredoxin|inhibition of 2Fe-2S electron transfer carrier|down-regulation of electron transfer flavoprotein, group II|down-regulation of electron carrier, chlorophyll electron transport system|downregulation of iron-sulfur electron transfer carrier|down-regulation of chloroplast-type ferredoxin|downregulation of small blue copper electron carrier|negative regulation of 2Fe-2S electron transfer carrier|down-regulation of copper electron carrier|negative regulation of adrenodoxin-type ferredoxin|down-regulation of redox-active disulfide bond electron carrier|down regulation of iron-sulfur electron transfer carrier|inhibition of mononuclear iron electron carrier|inhibition of redox-active disulfide bond electron carrier|down-regulation of electron transfer flavoprotein|inhibition of thioredoxin-like 2Fe-2S ferredoxin|down regulation of small blue copper electron carrier|down regulation of electron acceptor activity|negative regulation of dicluster bacterial-type ferredoxin|downregulation of rubredoxin|downregulation of 2Fe-2S electron transfer carrier|negative regulation of electron transfer flavoprotein, group II|down-regulation of electron carrier activity|downregulation of azurin|downregulation of electron transfer flavoprotein, group I|downregulation of thioredoxin-like 2Fe-2S ferredoxin|negative regulation of chloroplast-type ferredoxin|negative regulation of electron transfer flavoprotein|negative regulation of copper electron carrier|down-regulation of electron acceptor activity|down regulation of thioredoxin-like 2Fe-2S ferredoxin|negative regulation of electron donor activity|down regulation of amicyanin|downregulation of electron carrier, chlorophyll electron transport system|inhibition of electron donor activity|down regulation of electron carrier activity|inhibition of rubredoxin|negative regulation of thioredoxin-like 2Fe-2S ferredoxin|down regulation of dicluster bacterial-type ferredoxin|downregulation of electron donor activity|negative regulation of high-potential iron-sulfur carrier|inhibition of electron carrier, chlorophyll electron transport system|down-regulation of dicluster bacterial-type ferredoxin|down-regulation of monocluster bacterial-type ferredoxin|inhibition of electron transfer flavoprotein|down-regulation of small blue copper electron carrier|down regulation of electron transfer flavoprotein|negative regulation of mononuclear iron electron carrier|down regulation of 2Fe-2S electron transfer carrier|downregulation of electron transfer flavoprotein, group II|negative regulation of bacterial-type ferredoxin|down-regulation of 2Fe-2S electron transfer carrier|downregulation of 3Fe-4S/4Fe-4S electron transfer carrier|inhibition of electron transporter activity|negative regulation of monocluster bacterial-type ferredoxin|inhibition of azurin|down regulation of azurin|down regulation of electron transporter activity|negative regulation of rubredoxin|inhibition of polyferredoxin|downregulation of dicluster bacterial-type ferredoxin|downregulation of polyferredoxin|inhibition of iron-sulfur electron transfer carrier|down-regulation of adrenodoxin-type ferredoxin|down-regulation of azurin|downregulation of electron acceptor activity|negative regulation of amicyanin|down regulation of bacterial-type ferredoxin|down-regulation of high-potential iron-sulfur carrier|down-regulation of polyferredoxin|down-regulation of electron transfer flavoprotein, group I|down regulation of copper electron carrier|negative regulation of electron transporter activity|negative regulation of electron carrier, chlorophyll electron transport system|inhibition of 3Fe-4S/4Fe-4S electron transfer carrier|down-regulation of 3Fe-4S/4Fe-4S electron transfer carrier|downregulation of redox-active disulfide bond electron carrier|down regulation of high-potential iron-sulfur carrier|down-regulation of rubredoxin|inhibition of electron carrier activity|inhibition of electron acceptor activity|inhibition of small blue copper electron carrier|downregulation of adrenodoxin-type ferredoxin|down-regulation of mononuclear iron electron carrier|down regulation of mononuclear iron electron carrier|negative regulation of small blue copper electron carrier|inhibition of adrenodoxin-type ferredoxin|down regulation of electron carrier, chlorophyll electron transport system|inhibition of bacterial-type ferredoxin|downregulation of electron transporter activity|down-regulation of electron transporter activity|downregulation of mononuclear iron electron carrier|inhibition of dicluster bacterial-type ferredoxin|down-regulation of bacterial-type ferredoxin|downregulation of monocluster bacterial-type ferredoxin|negative regulation of 3Fe-4S/4Fe-4S electron transfer carrier|inhibition of chloroplast-type ferredoxin lb 2015-10-15T07:51:26Z biological_process owl:Class GO:0003878 biolink:NamedThing ATP citrate synthase activity Catalysis of the reaction: acetyl-CoA + ADP + H(+) + oxaloacetate + phosphate = ATP + citrate + CoA. tmpzr1t_l9r_go_relaxed.owl ATP-citric lyase activity|ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)|ATP-citrate (pro-S-)-lyase activity|citrate-ATP lyase activity|citric cleavage enzyme activity|acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]|acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)|ATP-citrate (pro-S)-lyase activity|ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity|acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity|citrate cleavage enzyme activity|ATP citrate (pro-S)-lyase activity|adenosine triphosphate citrate lyase activity MetaCyc:ATP-CITRATE-PRO-S--LYASE-RXN|Reactome:R-HSA-75848|KEGG_REACTION:R00352|RHEA:21160|EC:2.3.3.8|MetaCyc:PWY-5172 Note that this function was formerly EC:4.1.3.8. GO:0046913 molecular_function owl:Class GO:0031284 biolink:NamedThing positive regulation of guanylate cyclase activity Any process that activates or increases the frequency, rate or extent of guanylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of guanylate cyclase activity|activation of guanylate cyclase activity|upregulation of guanylate cyclase activity|up regulation of guanylate cyclase activity|stimulation of guanylate cyclase activity biological_process owl:Class GO:0019230 biolink:NamedThing proprioception The series of events by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception is mediated by proprioceptors, sensory nerve terminals found in muscles, tendons, and joint capsules, which give information concerning movements and position of the body. The receptors in the labyrinth are sometimes also considered proprioceptors. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Proprioception biological_process owl:Class GO:0050884 biolink:NamedThing neuromuscular process controlling posture Any process in which an organism voluntarily modulates its posture, the alignment of its anatomical parts. tmpzr1t_l9r_go_relaxed.owl regulation of posture biological_process owl:Class GO:0032252 biolink:NamedThing secretory granule localization Any process in which a secretory granule is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl secretory granule localisation|secretory granule clustering biological_process owl:Class GO:0045616 biolink:NamedThing regulation of keratinocyte differentiation Any process that modulates the frequency, rate or extent of keratinocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035014 biolink:NamedThing phosphatidylinositol 3-kinase regulator activity Modulates the activity of any of the phosphatidylinositol 3-kinases (PI3Ks). Regulatory subunits can link a PI3K catalytic subunit to upstream signaling events and help position the catalytic subunits close to their lipid substrates. tmpzr1t_l9r_go_relaxed.owl PI3K regulator activity|phosphoinositide 3-kinase regulator activity See also the molecular function term 'phosphoinositide 3-kinase activity ; GO:0035004'. molecular_function owl:Class GO:0036313 biolink:NamedThing phosphatidylinositol 3-kinase catalytic subunit binding Binding to the catalytic subunit of a phosphatidylinositol 3-kinase. The catalytic subunit catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring. tmpzr1t_l9r_go_relaxed.owl PI3K catalytic subunit binding|p110 binding bf 2012-08-16T10:58:45Z molecular_function owl:Class GO:0000957 biolink:NamedThing mitochondrial RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904182 biolink:NamedThing regulation of pyruvate dehydrogenase activity Any process that modulates the frequency, rate or extent of pyruvate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl regulation of pyruvic acid dehydrogenase activity|regulation of pyruvic dehydrogenase activity dph 2015-05-05T14:17:27Z biological_process owl:Class GO:2000170 biolink:NamedThing positive regulation of peptidyl-cysteine S-nitrosylation Any process that activates or increases the frequency, rate or extent of peptidyl-cysteine S-nitrosylation. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-07T10:49:35Z biological_process owl:Class GO:0090733 biolink:NamedThing tenascin complex A extracellular matrix complex involved in cell adhesion and cell migration. Typically homotrimeric or homohexameric. In mammals, four complexes exist: Tenascin-C, Tenascin-N (also known as Tenascin-W), Tenascin-X and Tenascin-R. tmpzr1t_l9r_go_relaxed.owl Tenascin-W|Tenascin-X|Tenascin-R|Tenascin-N|Tenascin-C An example is Tenascin-N (Q9UQP3) in PMID:17909022 (IDA). tb 2017-02-01T16:29:55Z cellular_component owl:Class GO:0008020 biolink:NamedThing G protein-coupled photoreceptor activity Combining with incidental electromagnetic radiation, particularly visible light, and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G protein coupled photoreceptor activity|photoreceptor activity, G-protein coupled|G-protein coupled photoreceptor activity GO:0004975 molecular_function owl:Class GO:0009584 biolink:NamedThing detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. tmpzr1t_l9r_go_relaxed.owl perception of visible light biological_process owl:Class GO:0045494 biolink:NamedThing photoreceptor cell maintenance Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001895 biolink:NamedThing retina homeostasis A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043306 biolink:NamedThing positive regulation of mast cell degranulation Any process that activates or increases the frequency, rate or extent of mast cell degranulation. tmpzr1t_l9r_go_relaxed.owl upregulation of mast cell degranulation|up regulation of mast cell degranulation|positive regulation of mast cell granule exocytosis|activation of mast cell degranulation|stimulation of mast cell degranulation|up-regulation of mast cell degranulation biological_process owl:Class GO:0043303 biolink:NamedThing mast cell degranulation The regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell. tmpzr1t_l9r_go_relaxed.owl mast cell granule exocytosis https://github.com/geneontology/go-ontology/issues/15943 biological_process owl:Class GO:0120293 biolink:NamedThing dynein axonemal particle An aggregation of axonemal dyneins, their specific assembly factors, and broadly-acting chaperones that is located in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl DynAP https://github.com/geneontology/go-ontology/issues/20687 krc 2021-01-19T01:47:17Z cellular_component owl:Class GO:0072117 biolink:NamedThing head kidney formation The developmental process pertaining to the initial formation of the head kidney. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T11:17:20Z biological_process owl:Class GO:0048144 biolink:NamedThing fibroblast proliferation The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070517 biolink:NamedThing DNA replication factor C core complex A protein complex containing three of the five subunits of eukaryotic replication factor C, those corresponding to human p40, p38, and p37. tmpzr1t_l9r_go_relaxed.owl RFC core complex cellular_component owl:Class GO:0106061 biolink:NamedThing negative regulation of exit from meiosis Any process that stops, prevents or reduces the frequency, rate or extent of exit from meiosis. tmpzr1t_l9r_go_relaxed.owl hjd 2017-10-18T16:51:15Z biological_process owl:Class GO:1990947 biolink:NamedThing exit from meiosis Any process involved in the progression from anaphase/telophase of meiosis II to the creation of end products of meiosis, in which ploidy is reduced by half. tmpzr1t_l9r_go_relaxed.owl meiotic exit vw 2016-04-21T14:14:15Z biological_process owl:Class GO:0099606 biolink:NamedThing microtubule plus-end directed mitotic chromosome migration The cell cycle process in which chromosomes that are laterally attached to one or more mitotic spindle microtubules migrate towards the spindle equator via plus-end-directed movement along the microtubules. This process is part of mitotic metaphase plate congression. tmpzr1t_l9r_go_relaxed.owl plus-end directed chromosome gliding biological_process owl:Class GO:0007080 biolink:NamedThing mitotic metaphase plate congression The cell cycle process in which chromosomes are aligned at the metaphase plate, a plane halfway between the poles of the mitotic spindle, during mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000878 biolink:NamedThing positive regulation of oligopeptide transport Any process that activates or increases the frequency, rate or extent of oligopeptide transport. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-27T01:54:11Z biological_process owl:Class GO:0006857 biolink:NamedThing oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021780 biolink:NamedThing glial cell fate specification The process in which a cell becomes capable of differentiating autonomously into a glial cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021781 biolink:NamedThing glial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a glial cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061850 biolink:NamedThing growth cone leading edge That part of the growth cone which represents the distal part of the structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035471 biolink:NamedThing luteinizing hormone signaling pathway involved in ovarian follicle development The series of molecular signals initiated by luteinizing hormone binding to a receptor, where the activated receptor signals via downstream effectors that contribute to progression of the ovarian follicle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl luteinizing hormone signalling pathway involved in ovarian follicle development bf 2010-04-22T04:43:20Z biological_process owl:Class GO:0031985 biolink:NamedThing Golgi cisterna Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl Golgi lamellae NIF_Subcellular:sao561419532 cellular_component owl:Class GO:0005795 biolink:NamedThing Golgi stack The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. tmpzr1t_l9r_go_relaxed.owl dictyosome|Golgi cisternae GO:0016940 cellular_component owl:Class GO:0061882 biolink:NamedThing negative regulation of anterograde axonal transport of mitochondrion Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse. tmpzr1t_l9r_go_relaxed.owl negative regulation of anterograde axon transport of mitochondria dph 2017-05-30T14:25:16Z biological_process owl:Class GO:0098957 biolink:NamedThing anterograde axonal transport of mitochondrion The directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse. tmpzr1t_l9r_go_relaxed.owl anterograde axon transport of mitochondria biological_process owl:Class GO:0043797 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) activity Catalysis of the reaction: D-glyceraldehyde-3-phosphate + H2O + 2 oxidized ferredoxin = 3-phospho-D-glycerate + 2 H+ + 2 reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde-3-phosphate Fd oxidoreductase activity|GAPOR|glyceraldehyde-3-phosphate ferredoxin reductase activity|D-glyceraldehyde-3-phosphate:ferredoxin oxidoreductase activity MetaCyc:1.2.7.6-RXN|RHEA:24148|EC:1.2.7.6 molecular_function owl:Class GO:0046802 biolink:NamedThing exit of virus from host cell nucleus by nuclear egress The directed movement of an assembled viral particle out of the host cell nucleus by budding and fusion through the nuclear membranes. In this process, enveloped viral particles are formed by budding through the inner nuclear membrane. These perinuclear enveloped particles then fuse with the outer nuclear membrane to deliver a naked capsid into the host cytoplasm. tmpzr1t_l9r_go_relaxed.owl egress of viral procapsid from host cell nucleus|nuclear egress|nuclear egress of viral procapsid|capsid egress VZ:1952 GO:0039676 biological_process owl:Class GO:0045999 biolink:NamedThing negative regulation of ecdysteroid secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of ecdysteroid. tmpzr1t_l9r_go_relaxed.owl down-regulation of ecdysteroid secretion|downregulation of ecdysteroid secretion|inhibition of ecdysteroid secretion|down regulation of ecdysteroid secretion biological_process owl:Class GO:0045457 biolink:NamedThing ecdysteroid secretion The regulated release of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015897 biolink:NamedThing organomercurial transport The process in which an organomercurial compound is transported across a membrane. Organomercurial substances are any organic compound containing a mercury atom. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061683 biolink:NamedThing branching involved in seminal vesicle morphogenesis The process in which the branching structure of the seminal vesicle is generated and organized. A branch is a division or offshoot from a main stem. tmpzr1t_l9r_go_relaxed.owl seminal vesicle branching|seminal vesicle branching morphogenesis|gonecyst branching morphogenesis|seminal gland branching morphogenesis dph 2015-03-04T13:39:47Z biological_process owl:Class GO:0043927 biolink:NamedThing exonucleolytic nuclear-transcribed mRNA catabolic process involved in endonucleolytic cleavage-dependent decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000294 biolink:NamedThing nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends. tmpzr1t_l9r_go_relaxed.owl mRNA degradation, endonucleolytic cleavage-dependent decay|endonucleolytic mRNA decay|nuclear mRNA catabolic process, endonucleolytic cleavage-dependent decay|mRNA breakdown, endonucleolytic cleavage-dependent decay|mRNA catabolism, endonucleolytic|mRNA catabolic process, endonucleolytic biological_process owl:Class GO:1902677 biolink:NamedThing left caudal basal body Any ciliary basal body that is part of a left caudal flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl cilium basal body of left caudal flagellum|microtubule basal body of left caudal flagellum|cilial basal body of left caudal flagellum|ciliary basal body of left caudal cilium|ciliary basal body of left caudal flagellum|cilial basal body of left caudal cilium|left caudal flagellum ciliary basal body|cilium basal body of left caudal cilium|microtubule basal body of left caudal cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T15:00:36Z cellular_component owl:Class GO:0097560 biolink:NamedThing left caudal flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left caudal basal body, extending cytoplasmically and exiting at the posterior end of the cell body. tmpzr1t_l9r_go_relaxed.owl left caudal cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:29:44Z cellular_component owl:Class GO:0035922 biolink:NamedThing foramen ovale closure The morphogenetic process in which the foramen ovale closes after birth, to prevent blood flow between the right and left atria. In the fetal heart, the foramen ovale allows blood to enter the left atrium from the right atrium. Closure of the foramen ovale after birth stops this blood flow. tmpzr1t_l9r_go_relaxed.owl foramen ovale of heart closure bf 2011-07-05T01:39:54Z biological_process owl:Class GO:0060728 biolink:NamedThing negative regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway Any process that decreases the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of Neu/ErbB-2 receptor activity|negative regulation of coreceptor activity involved in epidermal growth factor receptor signalling pathway dph 2009-06-12T01:32:38Z biological_process owl:Class GO:0060724 biolink:NamedThing coreceptor activity involved in epidermal growth factor receptor signaling pathway Combining with an extracellular messenger, and in cooperation with a primary EGF receptor, initiating a change in cell activity through the EGF receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl coreceptor activity involved in epidermal growth factor receptor signalling pathway dph 2009-06-12T01:06:08Z molecular_function owl:Class GO:1902416 biolink:NamedThing positive regulation of mRNA binding Any process that activates or increases the frequency, rate or extent of mRNA binding. tmpzr1t_l9r_go_relaxed.owl upregulation of mRNA binding|up regulation of mRNA binding|up-regulation of mRNA binding|activation of mRNA binding rb 2013-09-13T18:57:24Z biological_process owl:Class GO:1903049 biolink:NamedThing negative regulation of acetylcholine-gated cation channel activity Any process that stops, prevents or reduces the frequency, rate or extent of acetylcholine-gated cation channel activity. tmpzr1t_l9r_go_relaxed.owl inhibition of acetylcholine-gated cation channel activity|down-regulation of acetylcholine-gated cation channel activity|downregulation of acetylcholine-gated cation channel activity|down regulation of acetylcholine-gated cation channel activity bf 2014-05-22T14:47:00Z biological_process owl:Class GO:0022848 biolink:NamedThing acetylcholine-gated cation-selective channel activity Selectively enables the transmembrane transfer of a cation by a channel that opens upon binding acetylcholine. tmpzr1t_l9r_go_relaxed.owl acetylcholine-activated cation-selective channel activity|nicotinic acetylcholine-activated cation-selective channel activity|nAChR|nicotinergic acetylcholine receptor activity|ionotropic acetylcholine receptor activity|acetylcholine-gated cation channel activity GO:0016904|GO:0004889 molecular_function owl:Class GO:0070923 biolink:NamedThing siRNA loading onto RISC involved in gene silencing by small RNA The process in which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of chromatin gene by small RNA. tmpzr1t_l9r_go_relaxed.owl chromatin silencing by small RNA, siRNA loading onto RISC|siRNA loading onto RISC involved in chromatin silencing by small RNA https://github.com/geneontology/go-ontology/issues/22058 mah 2009-09-11T04:01:44Z biological_process owl:Class GO:0031048 biolink:NamedThing heterochromatin assembly by small RNA Assembly of heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. tmpzr1t_l9r_go_relaxed.owl RNA-mediated transcriptional silencing|small RNA-mediated heterochromatin formation|heterochromatin formation involved in chromatin silencing by small RNA|RNA-mediated chromatin silencing|small RNA-mediated heterochromatic silencing|chromatin silencing by small RNA|RNA interference-like chromatin silencing|RNA-mediated TGS|RNAi-like chromatin silencing|RNAi-directed chromatin silencing|heterochromatin assembly involved in chromatin silencing by small RNA mah 2009-09-11T04:10:51Z GO:0070924 biological_process owl:Class GO:0072377 biolink:NamedThing blood coagulation, common pathway A protein activation cascade that contributes to blood coagulation and consists of events leading from the formation of activated factor X to the formation of active thrombin, the cleavage of fibrinogen by thrombin, and the formation of cleaved fibrin into a stable multimeric, cross-linked complex. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'blood coagulation, intrinsic pathway ; GO:0007597'. mah 2010-11-22T03:01:12Z biological_process owl:Class GO:0060993 biolink:NamedThing kidney morphogenesis Morphogenesis of a kidney. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-19T08:16:55Z biological_process owl:Class GO:0072034 biolink:NamedThing renal vesicle induction Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the renal vesicle. tmpzr1t_l9r_go_relaxed.owl positive regulation of nephron formation|nephron induction mah 2010-01-25T02:58:18Z biological_process owl:Class GO:1905648 biolink:NamedThing regulation of shell calcification Any process that modulates the frequency, rate or extent of shell calcification. tmpzr1t_l9r_go_relaxed.owl pga 2016-11-08T16:24:36Z biological_process owl:Class GO:0031215 biolink:NamedThing shell calcification The precipitation of calcium carbonate onto the organic matrix of a shell, such as a mollusc shell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990399 biolink:NamedThing epithelium regeneration The regrowth of lost or destroyed epithelium. tmpzr1t_l9r_go_relaxed.owl regeneration of epithelium sl 2014-06-12T17:14:42Z biological_process owl:Class GO:1901706 biolink:NamedThing mesenchymal cell differentiation involved in bone development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of bone as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl hjd 2012-12-14T16:04:16Z biological_process owl:Class GO:0010937 biolink:NamedThing regulation of cytoplasmic microtubule depolymerization Any process that modulates the frequency, rate or extent of cytoplasmic microtubule depolymerization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000349 biolink:NamedThing negative regulation of CD40 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of signaling via the CD40 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of CD40 signalling pathway mah 2011-02-03T10:29:44Z biological_process owl:Class GO:0023035 biolink:NamedThing CD40 signaling pathway A series of molecular signals initiated by the binding of the cell surface receptor CD40 to one of its physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CD40 signalling pathway 2010-02-16T09:30:50Z biological_process owl:Class GO:0033503 biolink:NamedThing HULC complex A ubiquitin-conjugating enzyme complex that contains two RING finger proteins, which have ubiquitin ligase activity, in addition to a protein with ubiquitin-conjugating enzyme activity; catalyzes the ubiquitination of histone H2B at lysine 119 (or the equivalent residue). In Schizosaccharomyces the subunits are Rhp1, Brl2/Rfp1 and Brl1/Rfp2. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22142 cellular_component owl:Class GO:1904765 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to maltose Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a maltose stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|stimulation of global transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|upregulation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|upregulation of global transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|positive regulation of transcription from RNA polymerase II promoter, global involved in cellular response to maltose stimulus|positive regulation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|positive regulation of global transcription from Pol II promoter involved in cellular response to maltose stimulus|up-regulation of global transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|positive regulation of transcription from Pol II promoter involved in cellular response to maltose stimulus|up-regulation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|activation of global transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|stimulation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|up regulation of global transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus|activation of transcription from RNA polymerase II promoter involved in cellular response to maltose stimulus mah 2015-10-26T16:42:15Z biological_process owl:Class GO:0071328 biolink:NamedThing cellular response to maltose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a maltose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:30:45Z biological_process owl:Class GO:0072289 biolink:NamedThing metanephric nephron tubule formation The developmental process pertaining to the initial formation of a metanephric nephron tubule from unspecified parts. A metanephric nephron tubule is an epithelial tube that is part of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:47:44Z biological_process owl:Class GO:0072282 biolink:NamedThing metanephric nephron tubule morphogenesis The process in which the anatomical structures of a metanephric nephron tubule are generated and organized. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:25:11Z biological_process owl:Class GO:0015139 biolink:NamedThing alpha-ketoglutarate transmembrane transporter activity Enables the transfer of alpha-ketoglutarate from one side of a membrane to the other. Alpha-ketoglutarate (or oxoglutarate) is a compound with important roles in carbohydrate and amino acid metabolism, especially in transamination reactions and as a component of the TCA cycle. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate transporter activity Reactome:R-HSA-372480 molecular_function owl:Class GO:0060395 biolink:NamedThing SMAD protein signal transduction The cascade of processes by which a signal interacts with a receptor, causing a change in the activity of a SMAD protein, and ultimately effecting a change in the functioning of the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009920 biolink:NamedThing cell plate formation involved in plant-type cell wall biogenesis The cell cycle process in which the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cell plate formation involved in cellulose and pectin-containing cell wall biogenesis biological_process owl:Class GO:0061640 biolink:NamedThing cytoskeleton-dependent cytokinesis A cytokinesis that involves the function of a set of proteins that are part of the microfilament or microtubule cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-22T14:21:35Z biological_process owl:Class GO:0019430 biolink:NamedThing removal of superoxide radicals Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl cellular detoxification of superoxide radicals|removal of oxygen free radicals|removal of O2- MetaCyc:DETOX1-PWY biological_process owl:Class GO:0005821 biolink:NamedThing intermediate layer of spindle pole body Structure between the central and outer plaques of the spindle pole body. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005816 biolink:NamedThing spindle pole body The microtubule organizing center in fungi; functionally homologous to the animal cell centrosome. tmpzr1t_l9r_go_relaxed.owl SPB Wikipedia:Spindle_pole_body cellular_component owl:Class GO:0050928 biolink:NamedThing negative regulation of positive chemotaxis Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl down-regulation of positive chemotaxis|down regulation of positive chemotaxis|downregulation of positive chemotaxis|inhibition of positive chemotaxis biological_process owl:Class GO:0002363 biolink:NamedThing alpha-beta T cell lineage commitment The process in which a pro-T cell becomes committed to becoming an alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-cell lineage commitment|alpha-beta T lymphocyte lineage commitment|alpha-beta T-lymphocyte lineage commitment biological_process owl:Class GO:0036502 biolink:NamedThing Derlin-1-VIMP complex A protein complex containing, in mammals, Derlin-1 and VCP-interacting membrane protein (VIMP). The complex links the p97/VCP-containing ATPase complex with Derlin-1 during translocation of protein substrates from the endoplasmic reticulum to the cytosol for degradation by the cytosolic proteasome. tmpzr1t_l9r_go_relaxed.owl Derlin-1/VIMP complex bf 2015-05-14T11:40:45Z cellular_component owl:Class GO:0014853 biolink:NamedThing regulation of excitatory postsynaptic membrane potential involved in skeletal muscle contraction Any process, involved in skeletal muscle contraction, that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP). Excitatory postsynaptic potential (EPSP) is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl regulation of excitatory post-synaptic membrane potential involved in skeletal muscle contraction biological_process owl:Class GO:0014852 biolink:NamedThing regulation of skeletal muscle contraction by neural stimulation via neuromuscular junction Any process that modulates the frequency, rate or extent of skeletal muscle contraction by variation of the pattern of stimulation by nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043229 biolink:NamedThing intracellular organelle Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000488 biolink:NamedThing positive regulation of brassinosteroid biosynthetic process Any process that activates or increases the frequency, rate or extent of brassinosteroid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of brassinosteroid biosynthesis|positive regulation of brassinosteroid formation|positive regulation of brassinosteroid synthesis|positive regulation of brassinosteroid anabolism dhl 2011-03-11T06:48:45Z biological_process owl:Class GO:0016132 biolink:NamedThing brassinosteroid biosynthetic process The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. tmpzr1t_l9r_go_relaxed.owl brassinosteroid synthesis|brassinosteroid formation|brassinosteroid anabolism|brassinosteroid biosynthesis MetaCyc:PWY-699|MetaCyc:PWY-2582 biological_process owl:Class GO:0086073 biolink:NamedThing bundle of His cell-Purkinje myocyte adhesion involved in cell communication The attachment of a bundle of His cell to a Purkinje myocyte via adhesion molecules that results in the cells being juxtaposed so that they can communicate. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:00:30Z biological_process owl:Class GO:0042010 biolink:NamedThing interleukin-15 receptor activity Combining with interleukin-15 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-15 receptor activity|IL-15R molecular_function owl:Class GO:0039648 biolink:NamedThing modulation by virus of host protein ubiquitination Any process in which a virus modulates the frequency, rate or extent of protein ubiquitination in the host organism. Ubiquitination is the process in which one or more ubiquitin groups are added to a protein. tmpzr1t_l9r_go_relaxed.owl modulation of host ubiquitin pathway by virus bf 2012-10-09T15:20:47Z biological_process owl:Class GO:0030424 biolink:NamedThing axon The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1770195789|Wikipedia:Axon cellular_component owl:Class GO:0015145 biolink:NamedThing monosaccharide transmembrane transporter activity Enables the transfer of a monosaccharide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015749 biolink:NamedThing monosaccharide transmembrane transport The process in which a monosaccharide is transported across a lipid bilayer, from one side of a membrane to the other. Monosaccharides are the simplest carbohydrates; they are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. tmpzr1t_l9r_go_relaxed.owl monosaccharide transport vw 2017-02-19T10:41:27Z GO:1905950 biological_process owl:Class GO:0009758 biolink:NamedThing carbohydrate utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism. tmpzr1t_l9r_go_relaxed.owl sugar utilization GO:0007587 biological_process owl:Class GO:0009730 biolink:NamedThing detection of carbohydrate stimulus The series of events in which a carbohydrate stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of carbohydrate stimulus biological_process owl:Class GO:0035852 biolink:NamedThing horizontal cell localization Any process in which a horizontal cell is transported to, and/or maintained in, a specific location within the inner nuclear layer (INL) of the retina. A horizontal cell is a neuron that laterally connects other neurons in the inner nuclear layer (INL) of the retina. Targeting of retinal neurons to the appropriate lamina is vital to establish the architecture of the retina. tmpzr1t_l9r_go_relaxed.owl horizontal cell positioning|retinal horizontal cell positioning|laminar positioning of retinal horizontal cell|horizontal cell localisation bf 2011-05-11T01:56:40Z biological_process owl:Class GO:0046868 biolink:NamedThing mesosome An intracellular, often complex, membranous structure, sometimes with additional membranous lamellae inside, found in bacteria. They are associated with synthesis of DNA and secretion of proteins. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Mesosome cellular_component owl:Class GO:0070588 biolink:NamedThing calcium ion transmembrane transport A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl transmembrane calcium transport|calcium ion membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-04-28T10:44:09Z biological_process owl:Class GO:1904830 biolink:NamedThing negative regulation of aortic smooth muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of aortic smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of aortic smooth muscle cell differentiation|downregulation of aortic smooth muscle cell differentiation|inhibition of aortic smooth muscle cell differentiation|down-regulation of aortic smooth muscle cell differentiation rph 2015-11-24T10:20:47Z biological_process owl:Class GO:0035887 biolink:NamedThing aortic smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell surrounding the aorta. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-08T11:34:26Z biological_process owl:Class GO:2001282 biolink:NamedThing negative regulation of muscle cell chemotaxis toward tendon cell Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of a muscle cell towards a tendon cell in response to an external stimulus. For example, when the muscle cell arrives at the target tendon cell, migration is arrested so that attachments can be made between the cells. tmpzr1t_l9r_go_relaxed.owl negative regulation of muscle cell attraction|negative regulation of muscle cell chemotaxis towards tendon cell|arrest of muscle cell chemotaxis bf 2011-12-15T10:39:42Z biological_process owl:Class GO:0036061 biolink:NamedThing muscle cell chemotaxis toward tendon cell The directed movement of a muscle cell towards a tendon cell in response to an external stimulus. Tendon cells, for example, produce positive guidance cues that attract muscle cells. tmpzr1t_l9r_go_relaxed.owl muscle cell attraction|muscle cell chemotaxis towards tendon cell bf 2011-12-14T11:13:40Z biological_process owl:Class GO:0044330 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of wound healing The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in positive regulation of wound healing. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|canonical Wnt-activated signaling pathway involved in positive regulation of wound healing|canonical Wnt receptor signalling pathway involved in positive regulation of wound healing jl 2010-08-18T04:21:21Z biological_process owl:Class GO:0090303 biolink:NamedThing positive regulation of wound healing Any process that increases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury. tmpzr1t_l9r_go_relaxed.owl tb 2010-03-22T02:12:03Z biological_process owl:Class GO:0046974 biolink:NamedThing histone methyltransferase activity (H3-K9 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 9) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 9). This reaction is the addition of a methyl group onto lysine at position 9 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone lysine N-methyltransferase activity (H3-K9 specific)|histone methylase activity (H3-K9 specific) Reactome:R-HSA-427527|Reactome:R-HSA-427336 molecular_function owl:Class GO:0062026 biolink:NamedThing negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process Any process that stops or decreases the rate, frequency or extent of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T14:02:20Z biological_process owl:Class GO:0031146 biolink:NamedThing SCF-dependent proteasomal ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl SCF-dependent proteasomal ubiquitin-dependent protein catabolism|SCF-dependent proteasomal ubiquitin-dependent protein degradation|SCF-dependent proteasomal ubiquitin-dependent protein breakdown biological_process owl:Class GO:0120194 biolink:NamedThing regulation of anther dehiscence Any process involved in the dehiscence of an anther to release the pollen grains contained within it. tmpzr1t_l9r_go_relaxed.owl krc 2019-04-09T21:40:39Z biological_process owl:Class GO:0009901 biolink:NamedThing anther dehiscence The dehiscence of an anther to release the pollen grains contained within it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901895 biolink:NamedThing negative regulation of ATPase-coupled calcium transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of an ATPase-coupled calcium transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl downregulation of calcium efflux ATPase|down-regulation of calcium transporting ATPase activity|negative regulation of calcium ABC transporter|inhibition of calcium efflux ATPase|inhibition of sarcoplasmic reticulum ATPase|down regulation of Ca2+-transporting ATPase activity|down regulation of sarcoplasmic reticulum ATPase|downregulation of sarcoplasmic reticulum ATPase|negative regulation of sarcoplasmic reticulum ATPase|inhibition of calcium pump|down-regulation of Ca2+-pumping ATPase activity|negative regulation of calcium-translocating P-type ATPase activity|negative regulation of Ca(2+)-transporting ATPase activity|inhibition of Ca2+-transporting ATPase activity|negative regulation of calcium efflux ATPase|inhibition of ATP phosphohydrolase (Ca2+-transporting)|down-regulation of Ca(2+)-transporting ATPase activity|downregulation of plasma membrane Ca-ATPase|negative regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|inhibition of calcium-transporting ATPase activity|downregulation of calcium-transporting ATPase activity|down-regulation of calcium-translocating P-type ATPase activity|downregulation of calcium ABC transporter|down regulation of calcium ABC transporter|inhibition of plasma membrane Ca-ATPase|down-regulation of calcium-transporting ATPase activity|negative regulation of ATP phosphohydrolase (Ca2+-transporting)|downregulation of Ca(2+)-transporting ATPase activity|inhibition of Ca2+-pumping ATPase activity|down regulation of calcium transporting ATPase activity|negative regulation of plasma membrane Ca-ATPase|negative regulation of calcium pump|downregulation of Ca2+-pumping ATPase activity|down regulation of Ca(2+)-transporting ATPase activity|down-regulation of Ca2+-transporting ATPase activity|down regulation of calcium-translocating P-type ATPase activity|inhibition of calcium-translocating P-type ATPase activity|down regulation of ATP phosphohydrolase (Ca2+-transporting)|inhibition of calcium ABC transporter|down regulation of calcium-transporting ATPase activity|downregulation of ATP phosphohydrolase (Ca2+-transporting)|down-regulation of calcium efflux ATPase|negative regulation of Ca2+-transporting ATPase activity|down regulation of calcium efflux ATPase|negative regulation of Ca2+-pumping ATPase activity|downregulation of calcium-translocating P-type ATPase activity|negative regulation of calcium transporting ATPase activity|down regulation of plasma membrane Ca-ATPase|inhibition of Ca(2+)-transporting ATPase activity|down-regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|down-regulation of calcium ABC transporter|down regulation of calcium pump|down regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|down-regulation of plasma membrane Ca-ATPase|down-regulation of calcium pump|negative regulation of calcium-transporting ATPase activity|downregulation of Ca2+-transporting ATPase activity|down-regulation of sarcoplasmic reticulum ATPase|downregulation of sarco(endo)plasmic reticulum Ca2+-ATPase|down-regulation of ATP phosphohydrolase (Ca2+-transporting)|inhibition of sarco(endo)plasmic reticulum Ca2+-ATPase|down regulation of Ca2+-pumping ATPase activity|downregulation of calcium pump|inhibition of calcium transporting ATPase activity|downregulation of calcium transporting ATPase activity rl 2013-02-06T21:18:25Z biological_process owl:Class GO:0045507 biolink:NamedThing interleukin-25 receptor activity Combining with interleukin-25 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-25R|IL-25 receptor activity molecular_function owl:Class GO:0045511 biolink:NamedThing interleukin-25 binding Binding to interleukin-25. tmpzr1t_l9r_go_relaxed.owl IL-25 binding molecular_function owl:Class GO:0061288 biolink:NamedThing mesonephric capsule specification The regionalization process in which the identity of the mesonephric capsule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:56:20Z biological_process owl:Class GO:0030712 biolink:NamedThing negative regulation of border follicle cell delamination Any process that decreases the frequency, rate or extent of border cell delamination. tmpzr1t_l9r_go_relaxed.owl inhibition of border follicle cell delamination|downregulation of border follicle cell delamination|down regulation of border follicle cell delamination|down-regulation of border follicle cell delamination|negative regulation of border cell delamination biological_process owl:Class GO:0030709 biolink:NamedThing border follicle cell delamination The delamination process that results in the splitting off of border cells from the anterior epithelium, prior to border cell migration. tmpzr1t_l9r_go_relaxed.owl border cell delamination biological_process owl:Class GO:0098908 biolink:NamedThing regulation of neuronal action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a neuron. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl generation of action potential biological_process owl:Class GO:0019228 biolink:NamedThing neuronal action potential An action potential that occurs in a neuron. tmpzr1t_l9r_go_relaxed.owl generation of action potential biological_process owl:Class GO:0048714 biolink:NamedThing positive regulation of oligodendrocyte differentiation Any process that activates or increases the frequency, rate or extent of oligodendrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of oligodendrocyte differentiation|upregulation of oligodendrocyte differentiation|activation of oligodendrocyte differentiation|up regulation of oligodendrocyte differentiation|stimulation of oligodendrocyte differentiation biological_process owl:Class GO:0061226 biolink:NamedThing proximal/distal pattern formation involved in mesonephric nephron development The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis of a nephron in the mesonephros. The proximal/distal axis is defined by a line that runs from the glomerulus (proximal end) outward toward the mesonephric duct (distal end). tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:10:25Z biological_process owl:Class GO:0005665 biolink:NamedThing RNA polymerase II, core complex RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. tmpzr1t_l9r_go_relaxed.owl RNAP II complex|DNA-directed RNA polymerase II, core complex|RNA polymerase II complex cellular_component owl:Class GO:1990783 biolink:NamedThing periphagosomal region of cytoplasm Cytoplasm situated near, or occurring around, a phagosome. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T21:46:10Z cellular_component owl:Class GO:0002066 biolink:NamedThing columnar/cuboidal epithelial cell development The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002065 biolink:NamedThing columnar/cuboidal epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010987 biolink:NamedThing negative regulation of high-density lipoprotein particle clearance Any process that decreases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:09:36Z biological_process owl:Class GO:0034384 biolink:NamedThing high-density lipoprotein particle clearance The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl HDL clearance biological_process owl:Class GO:2000691 biolink:NamedThing negative regulation of cardiac muscle cell myoblast differentiation Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle cell myoblast differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of cardiac myoblast differentiation|negative regulation of myocardial precursor cell differentiation yaf 2011-05-25T09:08:06Z biological_process owl:Class GO:0097695 biolink:NamedThing establishment of protein-containing complex localization to telomere The directed movement of a protein-containing macromolecular complex to a specific location in the telomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl establishment of macromolecular complex localization to telomere|establishment of macromolecular complex localisation to telomere pr 2015-12-22T09:38:13Z biological_process owl:Class GO:1904357 biolink:NamedThing negative regulation of telomere maintenance via telomere lengthening Any process that stops, prevents or reduces the frequency, rate or extent of telomere maintenance via telomere lengthening. tmpzr1t_l9r_go_relaxed.owl downregulation of telomere maintenance via telomere lengthening|inhibition of telomere maintenance via telomere lengthening|down-regulation of telomere maintenance via telomere lengthening|down regulation of telomere maintenance via telomere lengthening nc 2015-06-12T16:53:22Z biological_process owl:Class GO:0010833 biolink:NamedThing telomere maintenance via telomere lengthening Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and lengthening the telomeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032189 biolink:NamedThing maintenance of actomyosin contractile ring localization Any process in which an actomyosin contractile ring is maintained in a location and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of contractile ring localization involved in cell cycle cytokinesis|maintenance of contractile ring localisation involved in cell cycle cytokinesis|maintenance of contractile ring localization involved in cytokinesis during cell cycle|cytokinetic ring anchoring biological_process owl:Class GO:0031566 biolink:NamedThing actomyosin contractile ring maintenance The cell cycle process in which the contractile ring is maintained in response to the cytokinesis checkpoint; that is when cytokinesis is delayed awaiting completion of nuclear division or the correct formation of cytokinetic structures. This process occurs in the context of cytokinesis that takes place as part of a cell cycle. tmpzr1t_l9r_go_relaxed.owl cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle|contractile ring maintenance involved in cell cycle cytokinesis biological_process owl:Class GO:2001268 biolink:NamedThing negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of initiator caspase activity|negative regulation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway pr 2011-12-13T07:56:21Z biological_process owl:Class GO:0042876 biolink:NamedThing aldarate transmembrane transporter activity Enables the transfer of aldarate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042869 biolink:NamedThing aldarate transmembrane transport The process in which aldarate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl aldarate transport biological_process owl:Class GO:0022400 biolink:NamedThing regulation of rhodopsin mediated signaling pathway Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling. tmpzr1t_l9r_go_relaxed.owl regulation of rhodopsin mediated signalling biological_process owl:Class GO:0033145 biolink:NamedThing positive regulation of intracellular steroid hormone receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of steroid hormone receptor signaling pathway|positive regulation of steroid hormone receptor signalling pathway biological_process owl:Class GO:0030518 biolink:NamedThing intracellular steroid hormone receptor signaling pathway A series of molecular signals generated as a consequence of a intracellular steroid hormone receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl steroid hormone receptor signaling pathway|steroid hormone receptor signalling pathway biological_process owl:Class GO:0050955 biolink:NamedThing thermoception The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature). tmpzr1t_l9r_go_relaxed.owl thermoreception Wikipedia:Thermoception biological_process owl:Class GO:0007463 biolink:NamedThing R2/R5 cell fate commitment The process in which the R2/R5 photoreceptors commit to their cell fate. R2 and R5 are paired photoreceptors which contribute the outer rhabdomeres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048054 biolink:NamedThing R2/R5 cell differentiation The process in which relatively unspecialized cells acquire the specialized features of R2 and R5 photoreceptors. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005462 biolink:NamedThing UDP-N-acetylglucosamine transmembrane transporter activity Enables the transfer of a UDP-N-acetylglucosamine from one side of a membrane to the other. N-acetylglucosamine is a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-741450|Reactome:R-HSA-742354|Reactome:R-HSA-5653622 molecular_function owl:Class GO:0061622 biolink:NamedThing glycolytic process through glucose-1-phosphate The chemical reactions and pathways through a glucose-1-phosphate intermediate that result in the catabolism of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-28T08:08:01Z biological_process owl:Class GO:0004614 biolink:NamedThing phosphoglucomutase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl alpha-D-glucose 1,6-phosphomutase activity|glucose phosphomutase activity|phosphoglucose mutase activity RHEA:23536|Reactome:R-HSA-9638127|Reactome:R-HSA-70427|Reactome:R-HSA-9638125|MetaCyc:PHOSPHOGLUCMUT-RXN|Reactome:R-HSA-5609939|EC:5.4.2.2|Reactome:R-HSA-70272 molecular_function owl:Class GO:0010642 biolink:NamedThing negative regulation of platelet-derived growth factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of platelet-derived growth factor receptor signalling pathway biological_process owl:Class GO:0048008 biolink:NamedThing platelet-derived growth factor receptor signaling pathway The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl PDGFR signaling pathway|PDGF receptor signalling pathway|PDGF receptor signaling pathway biological_process owl:Class GO:1903324 biolink:NamedThing negative regulation of snoRNA metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of snoRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of snoRNA metabolism|downregulation of snoRNA metabolism|negative regulation of snoRNA metabolism|down-regulation of snoRNA metabolic process|downregulation of snoRNA metabolic process|inhibition of snoRNA metabolic process|down regulation of snoRNA metabolic process|down-regulation of snoRNA metabolism|inhibition of snoRNA metabolism vw 2014-08-18T13:05:25Z biological_process owl:Class GO:0016074 biolink:NamedThing sno(s)RNA metabolic process The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA. tmpzr1t_l9r_go_relaxed.owl box C/D sRNA metabolic process|snoRNA metabolism biological_process owl:Class GO:0021768 biolink:NamedThing nucleus accumbens development The progression of the nucleus accumbens over time from its initial formation until its mature state. The nucleus accumbens is a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia. tmpzr1t_l9r_go_relaxed.owl ventral striatum development|accumbens nucleus development biological_process owl:Class GO:0045708 biolink:NamedThing regulation of larval salivary gland boundary specification Any process that modulates the frequency, rate or extent of salivary gland determination in a larval organism. tmpzr1t_l9r_go_relaxed.owl regulation of larval salivary gland determination biological_process owl:Class GO:0007433 biolink:NamedThing larval salivary gland boundary specification Determination in a larval organism of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland. tmpzr1t_l9r_go_relaxed.owl larval salivary gland determination biological_process owl:Class GO:0007194 biolink:NamedThing negative regulation of adenylate cyclase activity Any process that stops, prevents, or reduces the frequency, rate or extent of adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of adenylate cyclase activity|adenylate cyclase inhibitor|downregulation of adenylate cyclase activity|down regulation of adenylate cyclase activity|down-regulation of adenylate cyclase activity|negative regulation of adenylyl cyclase activity biological_process owl:Class GO:0001946 biolink:NamedThing lymphangiogenesis Lymph vessel formation when new vessels emerge from the proliferation of pre-existing vessels. tmpzr1t_l9r_go_relaxed.owl lymph vessel formation Wikipedia:Lymphangiogenesis biological_process owl:Class GO:0036303 biolink:NamedThing lymph vessel morphogenesis The process in which the anatomical structures of lymph vessels are generated and organized. The lymph vessel is the vasculature carrying lymph. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T10:08:47Z biological_process owl:Class GO:0045448 biolink:NamedThing mitotic cell cycle, embryonic The eukaryotic cell cycle in which a cell is duplicated without changing ploidy, occurring in the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031520 biolink:NamedThing plasma membrane of cell tip The portion of the plasma membrane surrounding the cell tip. tmpzr1t_l9r_go_relaxed.owl 'plasma membrane, cell tip' cellular_component owl:Class GO:0061283 biolink:NamedThing specification of mesonephric distal tubule identity The process in which the distal tubule of the mesonephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:42:10Z biological_process owl:Class GO:0032222 biolink:NamedThing regulation of synaptic transmission, cholinergic Any process that modulates the frequency, rate or extent of cholinergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007271 biolink:NamedThing synaptic transmission, cholinergic The vesicular release of acetylcholine from a presynapse, across a chemical synapse, the subsequent activation of dopamine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl cholinergic synaptic transmission biological_process owl:Class GO:1900298 biolink:NamedThing negative regulation of hexasaccharide transport Any process that stops, prevents or reduces the frequency, rate or extent of hexasaccharide transport. tmpzr1t_l9r_go_relaxed.owl downregulation of hexasaccharide transport|down-regulation of hexasaccharide transport|inhibition of hexasaccharide transport|down regulation of hexasaccharide transport tt 2012-04-05T07:44:40Z biological_process owl:Class GO:0001056 biolink:NamedThing RNA polymerase III activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter Reactome:R-HSA-1964482 krc 2010-09-23T03:44:47Z molecular_function owl:Class GO:0060558 biolink:NamedThing regulation of calcidiol 1-monooxygenase activity Any process that modulates the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:52:18Z biological_process owl:Class GO:0004498 biolink:NamedThing calcidiol 1-monooxygenase activity Catalysis of the reaction: calcidiol + H(+) + NADPH + O(2) = calcitriol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 25-hydroxycholecalciferol-1-hydroxylase activity|1-hydroxylase-25-hydroxyvitamin D3 activity|25-OHD-1 alpha-hydroxylase activity|25-hydroxyvitamin D-1 alpha hydroxylase activity|25-hydroxy D3-1alpha-hydroxylase activity|25-hydroxycholecalciferol 1-hydroxylase activity|calcidiol,NADPH:oxygen oxidoreductase (1-hydroxylating)|25-hydroxycholecalciferol 1alpha-hydroxylase activity|25-hydroxyvitamin D3 1alpha-hydroxylase activity|25-hydroxycholecalciferol 1-monooxygenase activity|cytochrome P450 CYP27B|25-hydroxy vitamin D3 1-alpha-hydroxylase activity EC:1.14.15.18|Reactome:R-HSA-5602186|KEGG_REACTION:R03610|MetaCyc:CALCIDIOL-1-MONOOXYGENASE-RXN|Reactome:R-HSA-209868|RHEA:20573 molecular_function owl:Class GO:0060123 biolink:NamedThing regulation of growth hormone secretion Any process that modulates the frequency, rate or extent of the regulated release of growth hormone from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000465 biolink:NamedThing exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 5'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006536 biolink:NamedThing glutamate metabolic process The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl glutamate metabolism|glutamic acid metabolism|glutamic acid metabolic process Wikipedia:Glutamic_acid biological_process owl:Class GO:0048647 biolink:NamedThing polyphenic determination The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to environmental and/or genetic cues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038117 biolink:NamedThing C-C motif chemokine 19 receptor activity Combining with the C-C motif chemokine 19 (CCL19) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CCL19 receptor activity bf 2012-03-22T11:59:10Z molecular_function owl:Class GO:0035757 biolink:NamedThing chemokine (C-C motif) ligand 19 binding Binding to chemokine (C-C motif) ligand 19. tmpzr1t_l9r_go_relaxed.owl CCL19 binding bf 2011-03-25T02:02:36Z molecular_function owl:Class GO:0061908 biolink:NamedThing phagophore A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle. tmpzr1t_l9r_go_relaxed.owl isolation membrane dph 2017-06-29T16:59:19Z cellular_component owl:Class GO:0001177 biolink:NamedThing regulation of transcription open complex formation at RNA polymerase II promoter Any process that modulates the rate, frequency or extent of a process involved the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble. tmpzr1t_l9r_go_relaxed.owl regulation of transcriptional open complex formation at RNA polymerase II promoter krc 2011-06-20T02:01:18Z biological_process owl:Class GO:0001113 biolink:NamedThing transcription open complex formation at RNA polymerase II promoter Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble. tmpzr1t_l9r_go_relaxed.owl transcriptional open complex formation at RNA polymerase II promoter|RNA polymerase II promoter melting krc 2010-12-02T02:27:19Z biological_process owl:Class GO:0060127 biolink:NamedThing prolactin secreting cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a prolactin secreting cell. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin. tmpzr1t_l9r_go_relaxed.owl lactotropic cell differentiation|mammotrope differentiation|mammotropic cell differentiation|lactotroph differentiation|mammotroph differentiation|mammotrophic cell differentiation|lactotrope differentiation|epsilon-acidophil differentiation biological_process owl:Class GO:0021984 biolink:NamedThing adenohypophysis development The progression of the adenohypophysis over time from its initial formation until its mature state. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl anterior pituitary gland development|anterior pituitary development|adenophysis development biological_process owl:Class GO:0010935 biolink:NamedThing regulation of macrophage cytokine production Any process that modulates the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010934 biolink:NamedThing macrophage cytokine production The appearance of a macrophage cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:1902763 biolink:NamedThing negative regulation of embryonic skeletal joint development Any process that stops, prevents or reduces the frequency, rate or extent of embryonic skeletal joint development. tmpzr1t_l9r_go_relaxed.owl down-regulation of embryonic skeletal joint development|downregulation of embryonic skeletal joint development|down regulation of embryonic skeletal joint development|inhibition of embryonic skeletal joint development mr 2014-03-07T17:46:07Z biological_process owl:Class GO:0035043 biolink:NamedThing male pronuclear envelope synthesis Assembly of a nuclear envelope containing nuclear pores and a lamina around the male pronucleus, the final step in sperm pronuclear formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035039 biolink:NamedThing male pronucleus assembly The conversion at fertilization of the inactive sperm nucleus into a male pronucleus with its chromosomes processed for the first zygotic division. tmpzr1t_l9r_go_relaxed.owl male pronucleus formation biological_process owl:Class GO:0106134 biolink:NamedThing positive regulation of cardiac muscle cell contraction Any process that activates or increases the frequency, rate or extent of cardiac muscle cell contraction. tmpzr1t_l9r_go_relaxed.owl hjd 2018-07-26T16:05:16Z biological_process owl:Class GO:1904778 biolink:NamedThing positive regulation of protein localization to cell cortex Any process that activates or increases the frequency, rate or extent of protein localization to cell cortex. tmpzr1t_l9r_go_relaxed.owl activation of protein localisation to cell cortex|upregulation of protein localization to cell cortex|upregulation of protein localisation to cell cortex|up regulation of protein localization to cell cortex|positive regulation of protein localisation to cell cortex|up regulation of protein localisation to cell cortex|up-regulation of protein localisation to cell cortex|up-regulation of protein localization to cell cortex|activation of protein localization to cell cortex An example is cye-1 in C. elegans, UniProt ID O01501 in PMID:17115027. es 2015-10-29T16:55:15Z biological_process owl:Class GO:0070350 biolink:NamedThing regulation of white fat cell proliferation Any process that modulates the frequency, rate or extent of white fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of white adipocyte proliferation|regulation of white adipose cell proliferation biological_process owl:Class GO:0070343 biolink:NamedThing white fat cell proliferation The multiplication or reproduction of white fat cells by cell division, resulting in the expansion of their population. tmpzr1t_l9r_go_relaxed.owl white adipose cell proliferation|white adipocyte proliferation biological_process owl:Class GO:0061037 biolink:NamedThing negative regulation of cartilage development Any process that decreases the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T03:41:35Z biological_process owl:Class GO:0098023 biolink:NamedThing virus tail, tip The basal end of the virus tail, which is used by the virus to attach to the host cell. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail tip bm 2012-07-19T14:13:02Z cellular_component owl:Class GO:0098015 biolink:NamedThing virus tail Part of the virion that may be used to recognize, attach and inject the viral genome and accessory proteins into the host cell. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail|viral tail Many bacteriophages with dsDNA genomes, or Caudovirales, have a tail. The viral tail can be short (Podoviridae), long and non-contractile (Siphoviridae) or long and contractile (Myoviridae). The tail is the channel through which the phage genome is injected into the host bacterial cell. bm 2012-07-18T17:04:46Z cellular_component owl:Class GO:0072194 biolink:NamedThing kidney smooth muscle tissue development The process whose specific outcome is the progression of smooth muscle in the kidney over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T02:05:30Z biological_process owl:Class GO:0021881 biolink:NamedThing Wnt-activated signaling pathway involved in forebrain neuron fate commitment The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell that contributes to the commitment of a neuroblast to aneuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:0022029 biolink:NamedThing telencephalon cell migration The orderly movement of a cell from one site to another at least one of which is located in the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021537 biolink:NamedThing telencephalon development The process whose specific outcome is the progression of the telencephalon over time, from its formation to the mature structure. The telencephalon is the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived. tmpzr1t_l9r_go_relaxed.owl cerebrum development biological_process owl:Class GO:0018344 biolink:NamedThing protein geranylgeranylation The covalent attachment of a geranylgeranyl group to a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein geranylgeranylation|protein amino acid geranylgeranylation GO:0018348 biological_process owl:Class GO:0032161 biolink:NamedThing cleavage apparatus septin structure Any of a series of structures composed of septins and septin-associated proteins localized to the cleavage plane which are involved in cytokinesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032156 biolink:NamedThing septin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of septins and associated proteins. Includes septin cytoskeleton-associated complexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030900 biolink:NamedThing forebrain development The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions). tmpzr1t_l9r_go_relaxed.owl prosencephalon development biological_process owl:Class GO:0033599 biolink:NamedThing regulation of mammary gland epithelial cell proliferation Any process that modulates the frequency, rate or extent of mammary gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033598 biolink:NamedThing mammary gland epithelial cell proliferation The multiplication or reproduction of mammary gland epithelial cells, resulting in the expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035222 biolink:NamedThing wing disc pattern formation The process giving rise to the pattern of cell differentiation in the wing imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035220 biolink:NamedThing wing disc development Progression of the wing disc over time, from its initial formation through to its metamorphosis to form adult structures including the wing hinge, wing blade and pleura. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097592 biolink:NamedThing ventral disc overlap zone A region of the ventral disc of Giardia species (trophozoite stage) where two portions of the same array of microtubules overlap (the microtubule array makes a complete circle and overlaps on itself). tmpzr1t_l9r_go_relaxed.owl ventral disk overlap zone|overlap zone Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:12:50Z cellular_component owl:Class GO:1905568 biolink:NamedThing regulation of ferrichrome biosynthetic process Any process that modulates the frequency, rate or extent of ferrichrome biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ferrichrome synthesis|regulation of ferrichrome biosynthesis|regulation of ferrichrome biosynthetic process, peptide formation|regulation of ferrichrome formation|regulation of ferrichrome anabolism|regulation of ferrichrome biosynthetic process, peptide modification pr 2016-10-18T14:49:00Z biological_process owl:Class GO:0002025 biolink:NamedThing norepinephrine-epinephrine-mediated vasodilation involved in regulation of systemic arterial blood pressure A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change. tmpzr1t_l9r_go_relaxed.owl noradrenaline-adrenaline vasodilation involved in regulation of blood pressure|vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure|norepinephrine-epinephrine vasodilation during blood pressure regulation biological_process owl:Class GO:0001993 biolink:NamedThing regulation of systemic arterial blood pressure by norepinephrine-epinephrine The process in which the secretion of norepinephrine or epinephrine into the bloodstream modulates the force with which blood passes through the circulatory system. tmpzr1t_l9r_go_relaxed.owl noradrenaline-adrenaline regulation of blood pressure|norepinephrine-epinephrine blood pressure control|norepinephrine-epinephrine blood pressure regulation biological_process owl:Class GO:0098575 biolink:NamedThing lumenal side of lysosomal membrane The side (leaflet) of the lysosomal membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal leaflet of lysosomal membrane|internal side of lysosomal membrane cellular_component owl:Class GO:0002182 biolink:NamedThing cytoplasmic translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-09T03:14:42Z biological_process owl:Class GO:0002181 biolink:NamedThing cytoplasmic translation The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. tmpzr1t_l9r_go_relaxed.owl Note that this term applies to translation performed by cytoplasmic ribosomes, which is distinct from translation performed by organellar ribosomes. For mitochondrial translation, consider GO:0032543 'mitochondrial translation' or its child terms. hjd 2011-06-09T03:11:53Z biological_process owl:Class GO:1902576 biolink:NamedThing negative regulation of nuclear cell cycle DNA replication Any process that stops, prevents or reduces the frequency, rate or extent of nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA replication involved in S-phase|downregulation of DNA replication involved in S phase|downregulation of DNA replication during S phase|inhibition of DNA replication involved in S phase|inhibition of DNA replication involved in S-phase|down regulation of DNA replication involved in S phase|downregulation of nuclear cell cycle DNA replication|negative regulation of DNA replication involved in S-phase|down regulation of DNA replication involved in S-phase|down-regulation of DNA replication involved in S phase|negative regulation of DNA replication during S phase|inhibition of DNA replication during S phase|down-regulation of DNA replication involved in S-phase|negative regulation of DNA replication involved in S phase|inhibition of nuclear cell cycle DNA replication|down regulation of DNA replication during S phase|down regulation of nuclear cell cycle DNA replication|down-regulation of DNA replication during S phase|down-regulation of nuclear cell cycle DNA replication mah 2013-12-17T14:03:02Z biological_process owl:Class GO:0009933 biolink:NamedThing meristem structural organization Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. tmpzr1t_l9r_go_relaxed.owl meristem organisation|meristem organization biological_process owl:Class GO:0097230 biolink:NamedThing cell motility in response to potassium ion Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another as a result of a potassium ion stimulus. tmpzr1t_l9r_go_relaxed.owl K+ facilitation of cell motility|potassium ion facilitation of cell motility pr 2012-01-25T04:39:45Z biological_process owl:Class GO:0035865 biolink:NamedThing cellular response to potassium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to K+ ion|cellular response to potassium bf 2011-05-25T02:59:11Z biological_process owl:Class GO:0010884 biolink:NamedThing positive regulation of lipid storage Any process that increases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. tmpzr1t_l9r_go_relaxed.owl positive regulation of lipid sequestration biological_process owl:Class GO:0090355 biolink:NamedThing positive regulation of auxin metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl positive regulation of auxin metabolism tb 2010-06-29T01:51:18Z biological_process owl:Class GO:1904236 biolink:NamedThing negative regulation of substrate-dependent cell migration, cell attachment to substrate Any process that stops, prevents or reduces the frequency, rate or extent of substrate-dependent cell migration, cell attachment to substrate. tmpzr1t_l9r_go_relaxed.owl down regulation of substrate-dependent cell migration, cell attachment to substrate|down-regulation of substrate-bound cell migration, cell attachment to substrate|negative regulation of substrate-bound cell migration, cell attachment to substrate|downregulation of substrate-dependent cell migration, cell attachment to substrate|inhibition of substrate-dependent cell migration, cell attachment to substrate|downregulation of substrate-bound cell migration, cell attachment to substrate|down regulation of substrate-bound cell migration, cell attachment to substrate|down-regulation of substrate-dependent cell migration, cell attachment to substrate|inhibition of substrate-bound cell migration, cell attachment to substrate pga 2015-05-15T13:30:05Z biological_process owl:Class GO:2000182 biolink:NamedThing regulation of progesterone biosynthetic process Any process that modulates the frequency, rate or extent of progesterone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of progesterone anabolism|regulation of progesterone biosynthesis|regulation of progesterone formation|regulation of progesterone synthesis dph 2010-10-14T07:36:06Z biological_process owl:Class GO:0006701 biolink:NamedThing progesterone biosynthetic process The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants. tmpzr1t_l9r_go_relaxed.owl progesterone anabolism|progesterone formation|progesterone biosynthesis|progesterone synthesis biological_process owl:Class GO:0090259 biolink:NamedThing regulation of retinal ganglion cell axon guidance Any process that modulates the frequency, rate, or extent of retinal ganglion cell axon guidance, the process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-03T04:13:59Z biological_process owl:Class GO:0031290 biolink:NamedThing retinal ganglion cell axon guidance The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl retinal ganglion cell axon pathfinding biological_process owl:Class GO:0098570 biolink:NamedThing stromal side of plastid inner membrane The side (leaflet) of the plastid inner membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031518 biolink:NamedThing CBF3 complex A multisubunit protein complex that binds to centromeric DNA and initiates kinetochore assembly. In yeast, this complex consists of four subunits, namely Ctf13p, Skp1p, Cep3p and Cbf2p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014744 biolink:NamedThing positive regulation of muscle adaptation Any process that activates or increases the frequency, rate or extent of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl positive regulation of muscle plasticity biological_process owl:Class GO:0001547 biolink:NamedThing antral ovarian follicle growth Increase in size of antral follicles due to cell proliferation and/or growth of the antral cavity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045445 biolink:NamedThing myoblast differentiation The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers. tmpzr1t_l9r_go_relaxed.owl myoblast cell differentiation biological_process owl:Class GO:0071353 biolink:NamedThing cellular response to interleukin-4 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-4 mah 2009-12-11T02:51:00Z biological_process owl:Class GO:1990703 biolink:NamedThing integral component of Golgi medial cisterna membrane The component of the Golgi medial membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of medial-Golgi cisterna membrane bhm 2015-03-16T16:05:25Z cellular_component owl:Class GO:1990675 biolink:NamedThing Golgi medial cisterna membrane The lipid bilayer surrounding any of the thin, flattened compartments that form the medial portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl medial-Golgi cisterna membrane bhm 2015-03-02T11:50:29Z cellular_component owl:Class GO:0048904 biolink:NamedThing anterior lateral line neuromast cupula development The process whose specific outcome is the progression of the anterior lateral line neuromast cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048901 biolink:NamedThing anterior lateral line neuromast development The process whose specific outcome is the progression of the anterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106074 biolink:NamedThing aminoacyl-tRNA metabolism involved in translational fidelity Any process which detects an amino-acid acetylated tRNA is charged with the correct amino acid, or removes incorrect amino acids from a charged tRNA. This process can be performed by tRNA synthases, or by subsequent reactions after tRNA aminoacylation. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA proofreading|aminoacyl-tRNA correction|aminoacyl-tRNA editin hjd 2017-11-29T17:48:39Z biological_process owl:Class GO:0098778 biolink:NamedThing curli subunit secretion coupled to curli assembly The secretion of soluble curli subunits through the outer membrane, coupled to nucleation of curli fiber formation at the membrane surface. tmpzr1t_l9r_go_relaxed.owl extracellular nucleation-precipitation pathway biological_process owl:Class GO:0098775 biolink:NamedThing curli assembly The process of assembly of curli, extracellular fibers produced by enteric bacteria. This process occurs outside the cell, where it is coupled to secretion across the cell outer membrane via nucleation by elements of the transporter complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005673 biolink:NamedThing transcription factor TFIIE complex A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072565 biolink:NamedThing endothelial microparticle formation The cellular component organization process in which microparticles bud off from an endothelial cell. tmpzr1t_l9r_go_relaxed.owl endothelial microparticle release|endothelial microparticle generation mah 2011-01-28T02:21:58Z biological_process owl:Class GO:0045063 biolink:NamedThing T-helper 1 cell differentiation The process in which a relatively unspecialized T cell acquires the specialized features of a T-helper 1 (Th1) cell. A Th1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma. tmpzr1t_l9r_go_relaxed.owl T-helper 1 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0042088 biolink:NamedThing T-helper 1 type immune response An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin. tmpzr1t_l9r_go_relaxed.owl Th1 immune response biological_process owl:Class GO:1990757 biolink:NamedThing ubiquitin ligase activator activity Binds to and increases the activity of a ubiquitin ligase. tmpzr1t_l9r_go_relaxed.owl mitotic anaphase-promoting complex activator activity vw 2015-06-01T08:53:04Z GO:0061636 molecular_function owl:Class GO:1904668 biolink:NamedThing positive regulation of ubiquitin protein ligase activity Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. tmpzr1t_l9r_go_relaxed.owl activation of E3|activation of anaphase-promoting complex activity|up-regulation of ubiquitin protein ligase activity|positive regulation of ubiquitin ligase activity|up-regulation of protein ubiquitination activity|activation of APC-fizzy related complex activity|up regulation of ubiquitin ligase activity|up-regulation of E3|positive regulation of E3|upregulation of ubiquitin protein ligase activity|activation of ubiquitin ligase activity|up regulation of APC-fizzy related complex activity|upregulation of ubiquitin ligase activity|upregulation of APC-fizzy related complex activity|up regulation of E3|upregulation of E3|positive regulation of APC-fizzy related complex activity|positive regulation of protein ubiquitination activity|up-regulation of APC-fizzy related complex activity|activation of APC-Cdc20 complex activity|activation of protein ubiquitination activity|up-regulation of ubiquitin ligase activity|up regulation of protein ubiquitination activity|up regulation of ubiquitin protein ligase activity|upregulation of protein ubiquitination activity|activation of ubiquitin protein ligase activity dph 2015-09-08T15:27:11Z GO:0090623|GO:0051488|GO:0007092|GO:1903835 biological_process owl:Class GO:0010057 biolink:NamedThing trichoblast fate specification The process involved in the specification of a trichoblast. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000616 biolink:NamedThing negative regulation of histone H3-K9 acetylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 acetylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of histone H3 acetylation at K9|negative regulation of histone H3K9 acetylation vk 2011-04-18T03:16:04Z biological_process owl:Class GO:0043970 biolink:NamedThing histone H3-K9 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K9 acetylation|histone H3 acetylation at K9 biological_process owl:Class GO:0036093 biolink:NamedThing germ cell proliferation The multiplication or reproduction of germ cells, reproductive cells in multicellular organisms, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl bf 2012-01-17T04:06:27Z biological_process owl:Class GO:0097533 biolink:NamedThing cellular stress response to acid chemical Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in cellular homeostasis caused by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. tmpzr1t_l9r_go_relaxed.owl cellular stress response to acid|cellular response to acid stress pr 2013-11-12T13:07:12Z biological_process owl:Class GO:0071229 biolink:NamedThing cellular response to acid chemical Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of the dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. tmpzr1t_l9r_go_relaxed.owl cellular response to acid|cellular response to oxoanion|cellular response to acid anion This term should be used to describe a response to a specific acid as a chemical. E.g., if a cell were responding to glutamate, then the response would be glutamate-specific; the cell is actually responding to the chemical structure of the anion portion of the dissociated acid. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. If annotating experiments where an acid is playing a role as a proton donor, please annotate to GO:0071468 'cellular response to acidic pH' instead. mah 2009-12-03T02:07:23Z biological_process owl:Class GO:0001570 biolink:NamedThing vasculogenesis The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes. tmpzr1t_l9r_go_relaxed.owl vascular morphogenesis Wikipedia:Vasculogenesis biological_process owl:Class GO:0061625 biolink:NamedThing glycolytic process through fructose-1-phosphate The chemical reactions and pathways resulting in the breakdown of fructose into pyruvate through a fructose-1-phosphate intermediate, with the concomitant production of ATP and NADH. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-29T13:04:10Z biological_process owl:Class GO:0060738 biolink:NamedThing epithelial-mesenchymal signaling involved in prostate gland development Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell where it is interpreted and contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl epithelial-mesenchymal signalling involved in prostate gland development dph 2009-06-15T09:31:31Z biological_process owl:Class GO:0030850 biolink:NamedThing prostate gland development The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid. tmpzr1t_l9r_go_relaxed.owl prostate development biological_process owl:Class GO:1902034 biolink:NamedThing negative regulation of hematopoietic stem cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of hemopoietic stem cell proliferation|down regulation of hematopoietic stem cell proliferation|down-regulation of hemopoietic stem cell proliferation|down-regulation of hematopoietic stem cell proliferation|negative regulation of hemopoietic stem cell proliferation|downregulation of hematopoietic stem cell proliferation|inhibition of hemopoietic stem cell proliferation|inhibition of hematopoietic stem cell proliferation|downregulation of hemopoietic stem cell proliferation ss 2013-04-02T05:13:24Z biological_process owl:Class GO:0046844 biolink:NamedThing chorion micropyle formation Establishment of the micropyle, a single cone-shaped specialization of the chorion that allows sperm entry into the egg prior to fertilization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002913 biolink:NamedThing positive regulation of lymphocyte anergy Any process that activates or increases the frequency, rate, or extent of lymphocyte anergy. tmpzr1t_l9r_go_relaxed.owl up-regulation of lymphocyte anergy|activation of lymphocyte anergy|stimulation of lymphocyte anergy|up regulation of lymphocyte anergy|upregulation of lymphocyte anergy biological_process owl:Class GO:0002249 biolink:NamedThing lymphocyte anergy Any process contributing to lymphocyte anergy, a state of functional inactivation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043116 biolink:NamedThing negative regulation of vascular permeability Any process that reduces the extent to which blood vessels can be pervaded by fluid. tmpzr1t_l9r_go_relaxed.owl down-regulation of vascular permeability|down regulation of vascular permeability|downregulation of vascular permeability|inhibition of vascular permeability biological_process owl:Class GO:0021669 biolink:NamedThing rhombomere 6 formation The process that gives rise to rhombomere 6. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000080 biolink:NamedThing mitotic G1 phase The cell cycle 'gap' phase which is the interval between the completion of DNA segregation by mitosis and the beginning of DNA synthesis. tmpzr1t_l9r_go_relaxed.owl G1 phase of mitotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1903830 biolink:NamedThing magnesium ion transmembrane transport The directed movement of magnesium ion across a membrane. tmpzr1t_l9r_go_relaxed.owl mcc 2015-01-21T17:38:30Z biological_process owl:Class GO:0033168 biolink:NamedThing conversion of ds siRNA to ss siRNA involved in RNA interference The process in which double-stranded siRNA molecules are converted to single-stranded siRNAs; required for the formation of a mature RITS complex during RNA interference. tmpzr1t_l9r_go_relaxed.owl RNA interference, conversion of ds siRNA to ss siRNA biological_process owl:Class GO:0016246 biolink:NamedThing RNA interference The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. tmpzr1t_l9r_go_relaxed.owl posttranscriptional gene silencing by siRNA|RNAi Wikipedia:RNA_interference Note that this term refers specifically to posttranscriptional mechanisms by which small interfering RNAs down-regulate gene expression. Also consider annotating to other descendants of 'gene silencing by RNA ; GO:0031047'. biological_process owl:Class GO:0070494 biolink:NamedThing regulation of thrombin-activated receptor signaling pathway Any process that modulates the frequency, rate or extent of a thrombin-activated receptor signaling pathway activity. A thrombin receptor signaling pathway is the series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl regulation of thrombin receptor signaling pathway|regulation of thrombin receptor signalling pathway biological_process owl:Class GO:0070493 biolink:NamedThing thrombin-activated receptor signaling pathway The series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl thrombin receptor signaling pathway|thrombin receptor signalling pathway biological_process owl:Class GO:0045112 biolink:NamedThing integrin biosynthetic process The chemical reactions and pathways resulting in the formation of integrins, a large family of transmembrane proteins that act as receptors for cell-adhesion molecules. tmpzr1t_l9r_go_relaxed.owl integrin biosynthesis|integrin formation|integrin anabolism|integrin synthesis biological_process owl:Class GO:0033040 biolink:NamedThing sour taste receptor activity Combining with soluble sour compounds to initiate a change in cell activity. These receptors are responsible for the sense of sour taste. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045929 biolink:NamedThing positive regulation of juvenile hormone metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving juvenile hormone. tmpzr1t_l9r_go_relaxed.owl positive regulation of juvenile hormone metabolism|upregulation of juvenile hormone metabolic process|activation of juvenile hormone metabolic process|stimulation of juvenile hormone metabolic process|up regulation of juvenile hormone metabolic process|up-regulation of juvenile hormone metabolic process biological_process owl:Class GO:0090080 biolink:NamedThing positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in an increase in the rate or frequency of a MAPKKK cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of MAPKKK cascade by fibroblast growth factor receptor signalling pathway tb 2009-10-19T11:30:22Z biological_process owl:Class GO:1904183 biolink:NamedThing negative regulation of pyruvate dehydrogenase activity Any process that stops, prevents or reduces the frequency, rate or extent of pyruvate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of pyruvate dehydrogenase activity|down-regulation of pyruvic acid dehydrogenase activity|down-regulation of pyruvate dehydrogenase activity|inhibition of pyruvic dehydrogenase activity|negative regulation of pyruvic dehydrogenase activity|inhibition of pyruvate dehydrogenase activity|down regulation of pyruvic acid dehydrogenase activity|negative regulation of pyruvic acid dehydrogenase activity|downregulation of pyruvic acid dehydrogenase activity|down regulation of pyruvic dehydrogenase activity|inhibition of pyruvic acid dehydrogenase activity|down regulation of pyruvate dehydrogenase activity|downregulation of pyruvic dehydrogenase activity|down-regulation of pyruvic dehydrogenase activity dph 2015-05-05T14:17:33Z biological_process owl:Class GO:0000290 biolink:NamedThing deadenylation-dependent decapping of nuclear-transcribed mRNA Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length. tmpzr1t_l9r_go_relaxed.owl deadenylylation-dependent decapping|deadenylation-dependent decapping of nuclear mRNA biological_process owl:Class GO:1902255 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl upregulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|activation of intrinsic apoptotic signaling pathway by p53 class mediator|up regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|up regulation of intrinsic apoptotic signaling pathway by p53 class mediator|upregulation of intrinsic apoptotic signaling pathway by p53 class mediator|positive regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|up regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|activation of signal transduction by p53 class mediator resulting in induction of apoptosis|up-regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|positive regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|upregulation of signal transduction by p53 class mediator resulting in induction of apoptosis|activation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator|up-regulation of intrinsic apoptotic signaling pathway by p53 class mediator|up-regulation of signal transduction by p53 class mediator resulting in induction of apoptosis rl 2013-06-20T19:41:54Z biological_process owl:Class GO:1905870 biolink:NamedThing positive regulation of 3'-UTR-mediated mRNA stabilization Any process that activates or increases the frequency, rate or extent of 3'-UTR-mediated mRNA stabilization. tmpzr1t_l9r_go_relaxed.owl positive regulation of 3'-untranslated region-mediated mRNA stabilization|activation of 3'-untranslated region-mediated mRNA stabilization|upregulation of 3'-UTR-mediated mRNA stabilization|up regulation of 3'-untranslated region-mediated mRNA stabilization|upregulation of 3'-untranslated region-mediated mRNA stabilization|activation of 3'-UTR-mediated mRNA stabilization|up-regulation of 3'-untranslated region-mediated mRNA stabilization|up-regulation of 3'-UTR-mediated mRNA stabilization|up regulation of 3'-UTR-mediated mRNA stabilization rz 2017-01-27T11:51:55Z biological_process owl:Class GO:1904940 biolink:NamedThing negative regulation of DNA nucleotidylexotransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA nucleotidylexotransferase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of TdT|negative regulation of deoxyribonucleic nucleotidyltransferase activity|inhibition of deoxyribonucleic nucleotidyltransferase activity|down regulation of terminal addition enzyme activity|negative regulation of terminal deoxyribonucleotidyltransferase activity|down regulation of deoxyribonucleic nucleotidyltransferase activity|down regulation of addase activity|negative regulation of terminal deoxynucleotide transferase activity|downregulation of DNA nucleotidylexotransferase activity|down-regulation of deoxyribonucleic nucleotidyltransferase activity|down-regulation of terminal addition enzyme activity|down regulation of terminal deoxynucleotidyltransferase activity|negative regulation of terminal deoxynucleotidyltransferase activity|down regulation of deoxynucleotidyl terminal transferase activity|inhibition of terminal deoxynucleotide transferase activity|downregulation of terminal deoxyribonucleotidyltransferase activity|down regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|down-regulation of DNA nucleotidylexotransferase activity|inhibition of DNA nucleotidylexotransferase activity|inhibition of terminal transferase activity|down regulation of terminal transferase activity|down-regulation of terminal transferase activity|downregulation of terminal addition enzyme activity|down-regulation of deoxynucleotidyl terminal transferase activity|negative regulation of terminal transferase activity|downregulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|negative regulation of addase activity|negative regulation of TdT|downregulation of addase activity|downregulation of deoxyribonucleic nucleotidyltransferase activity|down-regulation of terminal deoxynucleotide transferase activity|inhibition of addase activity|downregulation of terminal deoxynucleotidyltransferase activity|down-regulation of terminal deoxynucleotidyltransferase activity|downregulation of deoxynucleotidyl terminal transferase activity|down regulation of terminal deoxynucleotide transferase activity|down-regulation of TdT|down-regulation of addase activity|inhibition of terminal addition enzyme activity|negative regulation of deoxyribonucleic acid nucleotidyltransferase activity|down regulation of deoxyribonucleic acid nucleotidyltransferase activity|downregulation of terminal deoxynucleotide transferase activity|inhibition of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|down regulation of terminal deoxyribonucleotidyltransferase activity|inhibition of terminal deoxyribonucleotidyltransferase activity|downregulation of terminal transferase activity|down-regulation of terminal deoxyribonucleotidyltransferase activity|down regulation of TdT|negative regulation of deoxynucleotidyl terminal transferase activity|inhibition of terminal deoxynucleotidyltransferase activity|inhibition of deoxyribonucleic acid nucleotidyltransferase activity|downregulation of deoxyribonucleic acid nucleotidyltransferase activity|down regulation of DNA nucleotidylexotransferase activity|negative regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|downregulation of TdT|down-regulation of deoxyribonucleic acid nucleotidyltransferase activity|down-regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|negative regulation of terminal addition enzyme activity|inhibition of deoxynucleotidyl terminal transferase activity bc 2016-02-02T15:16:05Z biological_process owl:Class GO:0003912 biolink:NamedThing DNA nucleotidylexotransferase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). tmpzr1t_l9r_go_relaxed.owl addase activity|terminal deoxynucleotide transferase activity|terminal deoxyribonucleotidyltransferase activity|deoxynucleotidyl terminal transferase activity|terminal deoxynucleotidyltransferase activity|deoxyribonucleic acid nucleotidyltransferase activity|TdT|deoxyribonucleic nucleotidyltransferase activity|nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|terminal transferase activity|terminal addition enzyme activity EC:2.7.7.31|MetaCyc:DNA-NUCLEOTIDYLEXOTRANSFERASE-RXN molecular_function owl:Class GO:1990504 biolink:NamedThing dense core granule exocytosis The secretion of molecules (e.g. neuropeptides, insulin-related peptides or neuromodulators such as serotonin and dopamine) contained within a membrane-bounced dense core granule by fusion of the granule with the plasma membrane of a cell in response to increased cytosolic calcium levels. tmpzr1t_l9r_go_relaxed.owl dense core vesicle exocytosis kmv 2014-09-30T21:05:50Z biological_process owl:Class GO:0004057 biolink:NamedThing arginyltransferase activity Catalysis of the reaction: L-arginyl-tRNA + protein = tRNA + L-arginyl-protein. tmpzr1t_l9r_go_relaxed.owl arginyl-tRNA-protein transferase activity|arginyl-tRNA protein transferase activity|L-arginyl-tRNA:protein arginyltransferase activity|arginyl-tRNA--protein transferase activity|arginine transferase activity|arginyl-transfer ribonucleate-protein transferase activity|arginyl-transfer ribonucleate-protein aminoacyltransferase activity EC:2.3.2.8|MetaCyc:ARGINYLTRANSFERASE-RXN|RHEA:10208 GO:0042172 molecular_function owl:Class GO:0016598 biolink:NamedThing protein arginylation The conjugation of arginine to the N-terminal aspartate or glutamate of a protein; required for the degradation of the protein via the ubiquitin pathway. tmpzr1t_l9r_go_relaxed.owl protein amino acid arginylation GO:0019130 biological_process owl:Class GO:0015156 biolink:NamedThing melibiose transmembrane transporter activity Enables the transfer of melibiose from one side of a membrane to the other. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose and occurs as a constituent of the trisaccharide raffinose or in the exudates and nectaries of a number of plants. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015769 biolink:NamedThing melibiose transport The directed movement of melibiose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903893 biolink:NamedThing positive regulation of ATF6-mediated unfolded protein response Any process that activates or increases the frequency, rate or extent of the ATF6-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl up-regulation of ATF6 signaling in response to endoplasmic reticulum stress|activation of endoplasmic reticulum unfolded protein response; ATF6 signaling|up-regulation of UPR signaling by ATF6 stress sensor|upregulation of ATF6-beta UPR branch|activation of activating transcription factor 6 signaling in unfolded protein response|upregulation of ATF6-mediated unfolded protein response|activation of UPR signaling by ATF6 stress sensor|up regulation of UPR signaling by ATF6 stress sensor|positive regulation of ATF6-alpha UPR branch|up regulation of activating transcription factor 6 signaling in unfolded protein response|up regulation of ATF6 branch of UPR|up-regulation of ATF6-beta UPR branch|up-regulation of ATF6-mediated unfolded protein response|up regulation of ATF6-beta UPR branch|upregulation of ATF6 branch of UPR|upregulation of ATF6-alpha UPR branch|activation of ATF6 signaling in response to endoplasmic reticulum stress|up-regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|activation of ATF6-mediated unfolded protein response|positive regulation of UPR signaling by ATF6 stress sensor|activation of ATF6-alpha UPR branch|up regulation of ATF6-alpha UPR branch|upregulation of UPR signaling by ATF6 stress sensor|up-regulation of ATF6 branch of UPR|positive regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|up regulation of ATF6-mediated unfolded protein response|activation of ATF6-beta UPR branch|upregulation of ATF6 signaling in response to endoplasmic reticulum stress|up-regulation of ATF6-alpha UPR branch|positive regulation of ATF6-beta UPR branch|upregulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|positive regulation of activating transcription factor 6 signaling in unfolded protein response|upregulation of activating transcription factor 6 signaling in unfolded protein response|positive regulation of ATF6 branch of UPR|up-regulation of activating transcription factor 6 signaling in unfolded protein response|activation of ATF6 branch of UPR|up regulation of ATF6 signaling in response to endoplasmic reticulum stress|up regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|positive regulation of ATF6 signaling in response to endoplasmic reticulum stress bf 2015-02-09T10:17:36Z biological_process owl:Class GO:0031151 biolink:NamedThing histone methyltransferase activity (H3-K79 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 79) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 79). This reaction is the addition of a methyl group onto lysine at position 79 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone methylase activity (H3-K79 specific)|histone lysine N-methyltransferase activity (H3-K79 specific) molecular_function owl:Class GO:2000151 biolink:NamedThing negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T07:11:15Z biological_process owl:Class GO:1905654 biolink:NamedThing regulation of artery smooth muscle contraction Any process that modulates the frequency, rate or extent of artery smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl rph 2016-11-09T12:34:46Z biological_process owl:Class GO:0014824 biolink:NamedThing artery smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the artery. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The artery is a vessel carrying blood away from the heart. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050935 biolink:NamedThing iridophore differentiation The process in which a relatively unspecialized cell acquires the specialized features of an iridophore. Iridophores are pigment cells derived from the neural crest. They contain guanidine or other purine crystals deposited in stacks called reflecting platets or iridisomes. This gives them a silver, gold, or iridescent appearance. tmpzr1t_l9r_go_relaxed.owl iridophore cell differentiation biological_process owl:Class GO:0062231 biolink:NamedThing positive regulation of larval somatic muscle development Any process that increases the rate, frequency or extent of larval somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:49:16Z biological_process owl:Class GO:0046458 biolink:NamedThing hexadecanal metabolic process The chemical reactions and pathways involving hexadecanal, the C16 straight chain aldehyde. tmpzr1t_l9r_go_relaxed.owl hexadecanal metabolism biological_process owl:Class GO:1901095 biolink:NamedThing positive regulation of protein homotetramerization Any process that activates or increases the frequency, rate or extent of protein homotetramerization. tmpzr1t_l9r_go_relaxed.owl up regulation of protein homotetramer biosynthetic process|activation of protein homotetramerization|up-regulation of protein homotetramerization|upregulation of protein homotetramer biosynthesis|up-regulation of protein homotetramer formation|up regulation of protein homotetramer formation|up regulation of protein homotetramer biosynthesis|up regulation of protein homotetramer assembly|positive regulation of protein homotetramer biosynthetic process|upregulation of protein homotetramer formation|activation of protein homotetramer biosynthetic process|up regulation of protein homotetramerization|upregulation of protein homotetramerization|positive regulation of protein homotetramer assembly|up-regulation of protein homotetramer biosynthetic process|activation of protein homotetramer formation|upregulation of protein homotetramer assembly|activation of protein homotetramer biosynthesis|positive regulation of protein homotetramer biosynthesis|upregulation of protein homotetramer biosynthetic process|positive regulation of protein homotetramer formation|activation of protein homotetramer assembly|up-regulation of protein homotetramer biosynthesis|up-regulation of protein homotetramer assembly pm 2012-07-06T12:58:06Z biological_process owl:Class GO:0051289 biolink:NamedThing protein homotetramerization The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits. tmpzr1t_l9r_go_relaxed.owl protein homotetramer formation|protein homotetramer biosynthetic process|protein homotetramer biosynthesis|protein homotetramer assembly biological_process owl:Class GO:1902088 biolink:NamedThing plant-type cell wall loosening involved in abscission Any plant-type cell wall loosening that is involved in abscission. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall loosening involved in abscission tb 2013-04-26T18:34:45Z biological_process owl:Class GO:0009838 biolink:NamedThing abscission The controlled shedding of a body part. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Abscission biological_process owl:Class GO:0031257 biolink:NamedThing cell trailing edge membrane The portion of the plasma membrane surrounding the trailing edge of a motile cell. tmpzr1t_l9r_go_relaxed.owl trailing edge membrane cellular_component owl:Class GO:0031254 biolink:NamedThing cell trailing edge The area of a motile cell opposite to the direction of movement. tmpzr1t_l9r_go_relaxed.owl back of cell|trailing edge cellular_component owl:Class GO:0002782 biolink:NamedThing antifungal peptide secretion The regulated release of an antifungal peptide from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150076 biolink:NamedThing neuroinflammatory response The immediate defensive reaction by neural vertebrate tissue to infection or injury caused by chemical or physical agents. tmpzr1t_l9r_go_relaxed.owl nervous tissue inflammatory response|neural tissue inflammatory response|nerve tissue inflammatory response bc 2018-07-26T12:25:34Z biological_process owl:Class GO:0001845 biolink:NamedThing phagolysosome assembly The process that results in the fusion of a phagosome, a vesicle formed by phagocytosis, with a lysosome. tmpzr1t_l9r_go_relaxed.owl phagolysosome formation|late phagosome biosynthesis|late phagosome formation biological_process owl:Class GO:1902831 biolink:NamedThing positive regulation of spinal cord association neuron differentiation Any process that activates or increases the frequency, rate or extent of spinal cord association neuron differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of spinal cord dorsal interneuron differentiation|up regulation of spinal cord dorsal interneuron differentiation|positive regulation of spinal cord dorsal interneuron differentiation|activation of spinal cord association neuron differentiation|activation of spinal cord dorsal interneuron differentiation|up-regulation of spinal cord association neuron differentiation|upregulation of spinal cord dorsal interneuron differentiation|upregulation of spinal cord association neuron differentiation|up regulation of spinal cord association neuron differentiation mr 2014-03-31T17:12:38Z biological_process owl:Class GO:0021527 biolink:NamedThing spinal cord association neuron differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of association neurons. Association neurons are cells located in the dorsal portion of the spinal cord that integrate sensory input. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl spinal cord dorsal interneuron differentiation biological_process owl:Class GO:0061870 biolink:NamedThing positive regulation of hepatic stellate cell migration Any process that increases the frequency, rate or extent of hepatic stellate cell migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:17:23Z biological_process owl:Class GO:0009546 biolink:NamedThing plasmodesmatal cytoplasmic sleeve The space between the plasma membrane and the desmotubule of a plasmodesma. tmpzr1t_l9r_go_relaxed.owl plasmodesmatal cytoplasmic annulus cellular_component owl:Class GO:0010793 biolink:NamedThing regulation of mRNA export from nucleus Any process that modulates the frequency, rate or extent of the directed movement of mRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006406 biolink:NamedThing mRNA export from nucleus The directed movement of mRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl mRNA-nucleus export|mRNA transport from nucleus to cytoplasm|mRNA export from cell nucleus|mRNA export out of nucleus biological_process owl:Class GO:0030813 biolink:NamedThing positive regulation of nucleotide catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides. tmpzr1t_l9r_go_relaxed.owl up regulation of nucleotide catabolic process|up-regulation of nucleotide catabolic process|stimulation of nucleotide catabolic process|positive regulation of nucleotide breakdown|positive regulation of nucleotide catabolism|upregulation of nucleotide catabolic process|positive regulation of nucleotide degradation|activation of nucleotide catabolic process biological_process owl:Class GO:0055007 biolink:NamedThing cardiac muscle cell differentiation The process in which a cardiac muscle precursor cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. tmpzr1t_l9r_go_relaxed.owl cardiomyocyte differentiation|heart muscle cell differentiation biological_process owl:Class GO:0048738 biolink:NamedThing cardiac muscle tissue development The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl heart muscle development biological_process owl:Class GO:1904732 biolink:NamedThing regulation of electron transfer activity Any process that modulates the frequency, rate or extent of electron transfer activity. tmpzr1t_l9r_go_relaxed.owl regulation of bacterial-type ferredoxin|regulation of chloroplast-type ferredoxin|regulation of dicluster bacterial-type ferredoxin|regulation of electron acceptor activity|regulation of small blue copper electron carrier|regulation of electron transfer flavoprotein|regulation of rubredoxin|regulation of high-potential iron-sulfur carrier|regulation of electron transporter activity|regulation of amicyanin|regulation of electron transfer flavoprotein, group I|regulation of adrenodoxin-type ferredoxin|regulation of redox-active disulfide bond electron carrier|regulation of polyferredoxin|regulation of thioredoxin-like 2Fe-2S ferredoxin|regulation of mononuclear iron electron carrier|regulation of copper electron carrier|regulation of monocluster bacterial-type ferredoxin|regulation of 2Fe-2S electron transfer carrier|regulation of iron-sulfur electron transfer carrier|regulation of electron donor activity|regulation of electron transfer flavoprotein, group II|regulation of 3Fe-4S/4Fe-4S electron transfer carrier|regulation of azurin|regulation of electron carrier, chlorophyll electron transport system lb 2015-10-15T07:51:19Z biological_process owl:Class GO:0003402 biolink:NamedThing planar cell polarity pathway involved in axis elongation The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal to modulate cytoskeletal elements and control cell polarity that contributes to axis elongation. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T01:22:11Z biological_process owl:Class GO:0060681 biolink:NamedThing branch elongation involved in ureteric bud branching The growth of a branch of the ureteric bud along its axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T02:52:55Z biological_process owl:Class GO:0036419 biolink:NamedThing integral component of mycolate outer membrane The component of the mycolate outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to MOM|integral to mycolate outer membrane|integral to mycomembrane bf 2013-09-05T20:20:04Z cellular_component owl:Class GO:0036407 biolink:NamedThing mycolate outer membrane A mycolic acid-rich cell outer membrane containing a lipid bilayer and long-chain mycolic acids (hydroxylated branched-chain fatty acids) that are covalently linked to the cell wall peptidoglycan via an arabinogalactan network. Found in mycobacteria and related genera (e.g. corynebacteria). tmpzr1t_l9r_go_relaxed.owl mycobacterial outer membrane|MOM|mycomembrane bf 2013-08-15T13:33:46Z cellular_component owl:Class GO:2000267 biolink:NamedThing negative regulation of blood coagulation, intrinsic pathway Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation, intrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:45:46Z biological_process owl:Class GO:0007597 biolink:NamedThing blood coagulation, intrinsic pathway A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'blood coagulation, extrinsic pathway ; GO:0007598'. biological_process owl:Class GO:1901449 biolink:NamedThing negative regulation of response to butan-1-ol Any process that stops, prevents or reduces the frequency, rate or extent of response to butan-1-ol. tmpzr1t_l9r_go_relaxed.owl inhibition of response to butan-1-ol|down-regulation of response to butan-1-ol|downregulation of response to butan-1-ol|down regulation of response to butan-1-ol tt 2012-10-02T14:16:59Z biological_process owl:Class GO:1901422 biolink:NamedThing response to butan-1-ol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butan-1-ol stimulus. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to butan-1-ol GO:1990336 biological_process owl:Class GO:0010798 biolink:NamedThing regulation of multivesicular body size involved in ubiquitin-dependent protein catabolism Any process that modulates the volume of a multivesicular body as part of the chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006511 biolink:NamedThing ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. tmpzr1t_l9r_go_relaxed.owl myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism|ubiquitin-dependent protein catabolism|myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolic process|protein ubiquitylation during ubiquitin-dependent protein catabolic process|myofibrillar protein ubiquitination during ubiquitin-dependent protein degradation|protein ubiquitination during ubiquitin-dependent protein catabolic process|protein ubiquitination during ubiquitin-dependent protein degradation|protein ubiquitylation during ubiquitin-dependent protein catabolism|ubiquitin-dependent protein breakdown|protein ubiquitinylation during ubiquitin-dependent protein catabolic process|myofibrillar protein ubiquitination during ubiquitin-dependent protein breakdown|protein ubiquitination during ubiquitin-dependent protein breakdown|protein ubiquitinylation during ubiquitin-dependent protein catabolism|protein degradation tagging activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|ubiquitin-dependent protein degradation|ubiquitin-dependent proteolysis|protein ubiquitination during ubiquitin-dependent protein catabolism GO:0042787|GO:0043432 biological_process owl:Class GO:0070745 biolink:NamedThing interleukin-35 complex A protein complex that is composed of an interleukin-12 alpha subunit (p35, product of the IL12A gene) and an EBI3 subunit and is secreted into the extracellular space. tmpzr1t_l9r_go_relaxed.owl p35|IL12A|IL-35 complex|EBI3 Note that this heterodimeric cytokine utilizes the same IL-12p35 subunit as its alpha chain as IL-12 uses and the same EBI3 subunit (product of EBI3, Epstein-Barr virus induced gene 3) as its beta chain as IL-27 uses. IL-35 requires both subunits -- there is no separate IL35 gene. mah 2009-06-23T01:13:14Z cellular_component owl:Class GO:0001070 biolink:NamedThing RNA-binding transcription regulator activity A transcription regulator activity that modulates the transcription of specific gene sets via selective and non-covalent binding to a specific RNA sequence. This function is known to occur in phages and viruses, for example the lambda N and the HIV tat proteins are necessary to allow RNA polymerase to read through terminator sequences. tmpzr1t_l9r_go_relaxed.owl RNA binding transcription regulator activity|RNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/14872 krc 2010-10-21T04:19:17Z molecular_function owl:Class GO:0010710 biolink:NamedThing regulation of collagen catabolic process Any process that modulates the rate, frequency or extent of collagen catabolism. Collagen catabolism is the proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl regulation of collagen breakdown|regulation of collagen degradation|regulation of collagen catabolism biological_process owl:Class GO:0030574 biolink:NamedThing collagen catabolic process The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells. tmpzr1t_l9r_go_relaxed.owl collagen catabolism|collagen degradation|collagen breakdown biological_process owl:Class GO:0106060 biolink:NamedThing regulation of exit from meiosis Any process that modulates the frequency, rate or extent of exit from mitosis. tmpzr1t_l9r_go_relaxed.owl hjd 2017-10-18T16:48:01Z biological_process owl:Class GO:0045066 biolink:NamedThing regulatory T cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a regulatory T cell. Regulatory T cells control or suppress immune responses through a variety of mechanisms and subsets include the CD4+CD25+ cell type as well as certain CD8+ cell types. tmpzr1t_l9r_go_relaxed.owl suppressor T lymphocyte differentiation|suppressor T-lymphocyte differentiation|regulatory T cell development|suppressor T-cell differentiation|regulatory T-cell differentiation|suppressor T cell differentiation|regulatory T-lymphocyte differentiation|regulatory T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0035004 biolink:NamedThing phosphatidylinositol 3-kinase activity Catalysis of the reaction: ATP + a phosphatidylinositol = ADP + a phosphatidylinositol 3-phosphate. This reaction is the addition of a phosphate group to phosphatidylinositol or one of its phosphorylated derivatives at the 3' position of the inositol ring. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 3-kinase activity Reactome:R-HSA-9028519|Reactome:R-HSA-9670433|Reactome:R-HSA-2045911|Reactome:R-HSA-1433514|Wikipedia:Phosphoinositide_3-kinase molecular_function owl:Class GO:1900731 biolink:NamedThing positive regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway Any process that activates or increases the frequency, rate or extent of adenylate cyclase-inhibiting opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of opioid receptor-mediated adenylate cyclase inhibition|upregulation of adenylate cyclase-inhibiting opioid receptor signaling pathway|activation of adenylate cyclase-inhibiting opioid receptor signaling pathway|up regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway bf 2012-05-25T03:21:19Z biological_process owl:Class GO:0031635 biolink:NamedThing adenylate cyclase-inhibiting opioid receptor signaling pathway The series of molecular signals generated as a consequence of an opioid receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl inhibition of adenylate cyclase activity by opioid receptor signaling pathway|opioid receptor, adenylate cyclase inhibiting pathway|inhibition of adenylate cyclase activity by opioid receptor signalling pathway biological_process owl:Class GO:1902047 biolink:NamedThing polyamine transmembrane transport The process in which a polyamine macromolecule is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl polyamine import|polyamine uptake tb 2013-04-03T15:34:57Z GO:1905122 biological_process owl:Class GO:0005759 biolink:NamedThing mitochondrial matrix The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. tmpzr1t_l9r_go_relaxed.owl mitochondrial lumen|mitochondrial stroma NIF_Subcellular:sao1804523077|Wikipedia:Mitochondrial_matrix GO:0031980 cellular_component owl:Class GO:0032461 biolink:NamedThing positive regulation of protein oligomerization Any process that activates or increases the frequency, rate or extent of protein oligomerization. tmpzr1t_l9r_go_relaxed.owl activation of protein oligomerization|up regulation of protein oligomerization|upregulation of protein oligomerization|induction of protein oligomerization|stimulation of protein oligomerization|up-regulation of protein oligomerization biological_process owl:Class GO:0007301 biolink:NamedThing female germline ring canal formation Assembly of the intercellular bridges that connect the germ-line cells of a female cyst. tmpzr1t_l9r_go_relaxed.owl nurse cell ring canal formation|ovarian ring canal formation biological_process owl:Class GO:0021666 biolink:NamedThing rhombomere 5 formation The process that gives rise to rhombomere 5. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001938 biolink:NamedThing positive regulation of endothelial cell proliferation Any process that activates or increases the rate or extent of endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of endothelial cell proliferation|up-regulation of endothelial cell proliferation|stimulation of endothelial cell proliferation|up regulation of endothelial cell proliferation|activation of endothelial cell proliferation biological_process owl:Class GO:0050934 biolink:NamedThing late stripe melanocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a late stripe melanocyte (LSM). In zebrafish, LSMs develop during the second phase (3-4 weeks of development) of the larva-to-adult transition (2-4 weeks of development). tmpzr1t_l9r_go_relaxed.owl late stripe melanocyte cell differentiation|late stripe melanophore differentiation biological_process owl:Class GO:0022416 biolink:NamedThing chaeta development The process whose specific outcome is the progression of a chaeta over time, from its formation to the mature structure. A chaeta is a sensory multicellular cuticular outgrowth of a specifically differentiated cell. tmpzr1t_l9r_go_relaxed.owl bristle development biological_process owl:Class GO:0004340 biolink:NamedThing glucokinase activity Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl glucokinase (phosphorylating)|glucose kinase activity|ATP:D-glucose 6-phosphotransferase activity MetaCyc:GLUCOKIN-RXN|EC:2.7.1.2|Reactome:R-HSA-5621918|Reactome:R-HSA-70420|Reactome:R-HSA-5621888|RHEA:17825 molecular_function owl:Class GO:0140104 biolink:NamedThing molecular carrier activity Directly binding to a specific ion or molecule and delivering it either to an acceptor molecule or to a specific location. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20848|https://github.com/geneontology/go-ontology/issues/14221 Note that a carrier moves with its substrate/cargo, while a transporter does not move with the cargo, but facilitates the change in localization. pg 2017-09-19T13:10:18Z molecular_function owl:Class GO:0080155 biolink:NamedThing regulation of double fertilization forming a zygote and endosperm Any process that modulates the rate, frequency or extent of double fertilization forming a zygote and endosperm. Double fertilization forming a zygote and endosperm is a type of fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-01T03:46:39Z biological_process owl:Class GO:0009567 biolink:NamedThing double fertilization forming a zygote and endosperm Fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl double fertilization biological_process owl:Class GO:0022405 biolink:NamedThing hair cycle process A multicellular organismal process involved in the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042633 biolink:NamedThing hair cycle The cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034743 biolink:NamedThing APC-IQGAP complex A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC) and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0031252 biolink:NamedThing cell leading edge The area of a motile cell closest to the direction of movement. tmpzr1t_l9r_go_relaxed.owl leading edge of cell|front of cell cellular_component owl:Class GO:0019071 biolink:NamedThing viral DNA cleavage involved in viral genome maturation The cleavage of viral DNA into singular functional units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019070 biolink:NamedThing viral genome maturation The processes involved in creating a mature, stable viral genome. Begins after genome replication with a newly synthesized nucleic acid and ends when the genome is ready to be packaged. Includes the addition of proteins to the newly synthesized genome, and DNA repair processes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021637 biolink:NamedThing trigeminal nerve structural organization The process that contributes to the act of creating the structural organization of the oculomotor nerve. This process pertains to the physical shaping of a rudimentary structure. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae. tmpzr1t_l9r_go_relaxed.owl CN V structural organization|trigeminal nerve structural organisation biological_process owl:Class GO:2000063 biolink:NamedThing positive regulation of ureter smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of ureter smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T01:44:28Z biological_process owl:Class GO:0072193 biolink:NamedThing ureter smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell in the ureter. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:55:01Z biological_process owl:Class GO:0062201 biolink:NamedThing actin wave A cellular anatomical entity that is part of the actin cytoskeleton and results in a wave-like propagation of actin networks. It consists of dynamic structures traveling on the ventral (substrate-attached) side of the cell during cell migration, cytokinesis, adhesion and neurogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2020-01-02T13:45:03Z cellular_component owl:Class GO:0072212 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in metanephros development Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the branching morphogenesis by which the metanephros progresses from its initial formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T01:14:09Z biological_process owl:Class GO:1903839 biolink:NamedThing positive regulation of mRNA 3'-UTR binding Any process that activates or increases the frequency, rate or extent of mRNA 3'-UTR binding. tmpzr1t_l9r_go_relaxed.owl up regulation of mRNA 3' UTR binding|positive regulation of mRNA 3' UTR binding|upregulation of mRNA 3'-UTR binding|up-regulation of mRNA 3'-UTR binding|activation of mRNA 3'-UTR binding|upregulation of mRNA 3' UTR binding|up regulation of mRNA 3'-UTR binding|activation of mRNA 3' UTR binding|up-regulation of mRNA 3' UTR binding als 2015-01-22T11:54:17Z biological_process owl:Class GO:1900641 biolink:NamedThing negative regulation of austinol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of austinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of austinol anabolism|inhibition of austinol biosynthetic process|down regulation of austinol biosynthesis|downregulation of austinol biosynthetic process|down regulation of austinol formation|negative regulation of austinol biosynthesis|downregulation of austinol formation|down regulation of austinol synthesis|negative regulation of austinol anabolism|inhibition of austinol anabolism|downregulation of austinol anabolism|down-regulation of austinol synthesis|downregulation of austinol biosynthesis|down regulation of austinol anabolism|inhibition of austinol formation|negative regulation of austinol formation|down regulation of austinol biosynthetic process|down-regulation of austinol formation|down-regulation of austinol biosynthetic process|negative regulation of austinol synthesis|inhibition of austinol synthesis|downregulation of austinol synthesis|inhibition of austinol biosynthesis|down-regulation of austinol biosynthesis di 2012-05-22T03:57:59Z biological_process owl:Class GO:1900560 biolink:NamedThing austinol biosynthetic process The chemical reactions and pathways resulting in the formation of austinol. tmpzr1t_l9r_go_relaxed.owl austinol anabolism|austinol synthesis|austinol formation|austinol biosynthesis di 2012-05-15T06:27:30Z biological_process owl:Class GO:2000813 biolink:NamedThing negative regulation of barbed-end actin filament capping Any process that stops, prevents or reduces the frequency, rate or extent of barbed-end actin filament capping. tmpzr1t_l9r_go_relaxed.owl negative regulation of plus-end F-actin capping activity|negative regulation of plus-end actin filament capping activity|negative regulation of barbed-end actin capping activity|negative regulation of barbed-end F-actin capping activity rl 2011-07-07T04:08:18Z biological_process owl:Class GO:0051016 biolink:NamedThing barbed-end actin filament capping The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl plus-end actin filament capping activity|barbed-end actin capping activity|barbed-end F-actin capping activity|plus-end F-actin capping activity biological_process owl:Class GO:0043282 biolink:NamedThing pharyngeal muscle development The process whose specific outcome is the progression of the pharyngeal muscle over time, from its formation to the mature structure. A pharyngeal muscle is any muscle that forms part of the pharynx. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060465 biolink:NamedThing pharynx development The biological process whose specific outcome is the progression of a pharynx from an initial condition to its mature state. The pharynx is the part of the digestive system immediately posterior to the mouth. tmpzr1t_l9r_go_relaxed.owl pharyngeal development biological_process owl:Class GO:0035761 biolink:NamedThing dorsal motor nucleus of vagus nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the dorsal motor nucleus of the vagus nerve to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-29T02:45:50Z biological_process owl:Class GO:2000859 biolink:NamedThing negative regulation of aldosterone secretion Any process that stops, prevents or reduces the frequency, rate or extent of aldosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:47:31Z biological_process owl:Class GO:1905804 biolink:NamedThing positive regulation of cellular response to manganese ion Any process that activates or increases the frequency, rate or extent of cellular response to manganese ion. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular response to manganese ion|up-regulation of cellular response to manganese|activation of cellular response to manganese ion|activation of cellular response to manganese|positive regulation of cellular response to manganese|upregulation of cellular response to manganese|upregulation of cellular response to manganese ion|up regulation of cellular response to manganese ion|up regulation of cellular response to manganese pga 2017-01-11T14:59:57Z biological_process owl:Class GO:0071287 biolink:NamedThing cellular response to manganese ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to manganese mah 2009-12-10T04:06:18Z biological_process owl:Class GO:0046976 biolink:NamedThing histone methyltransferase activity (H3-K27 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 27) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 27). This reaction is the addition of a methyl group onto lysine at position 27 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone methylase activity (H3-K27 specific)|histone lysine N-methyltransferase activity (H3-K27 specific) Reactome:R-HSA-3240295 molecular_function owl:Class GO:0070734 biolink:NamedThing histone H3-K27 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H3 K27 methylation|histone H3 K27 methylation|histone H3K27me mah 2009-06-19T11:44:37Z biological_process owl:Class GO:1905052 biolink:NamedThing negative regulation of base-excision repair Any process that stops, prevents or reduces the frequency, rate or extent of base-excision repair. tmpzr1t_l9r_go_relaxed.owl down-regulation of base-excision repair|inhibition of BER|downregulation of BER|negative regulation of BER|down regulation of BER|inhibition of base-excision repair|downregulation of base-excision repair|down-regulation of BER|down regulation of base-excision repair ah 2016-03-16T10:52:09Z biological_process owl:Class GO:0140014 biolink:NamedThing mitotic nuclear division A mitotic cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. tmpzr1t_l9r_go_relaxed.owl mitosis https://github.com/geneontology/go-ontology/issues/19910 pg 2017-03-23T14:44:23Z biological_process owl:Class GO:0015436 biolink:NamedThing ABC-type capsular-polysaccharide transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + capsular polysaccharide(in) = ADP + phosphate + capsular polysaccharide(out). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled capsular-polysaccharide transporter activity|capsular-polysaccharide-transporting ATPase activity|ATP-dependent capsular-polysaccharide transporter activity|capsular-polysaccharide ABC transporter|ATP phosphohydrolase (capsular-polysaccharide-exporting) EC:7.6.2.12|MetaCyc:3.6.3.38-RXN molecular_function owl:Class GO:0015776 biolink:NamedThing capsular polysaccharide transport The directed movement of capsular polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Capsular polysaccharides make up the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl capsular-polysaccharide transport|capsule polysaccharide transport biological_process owl:Class GO:0045655 biolink:NamedThing regulation of monocyte differentiation Any process that modulates the frequency, rate or extent of monocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030224 biolink:NamedThing monocyte differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte. tmpzr1t_l9r_go_relaxed.owl monocyte cell differentiation biological_process owl:Class GO:1904362 biolink:NamedThing regulation of calcitonin secretion Any process that modulates the frequency, rate or extent of calcitonin secretion. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-15T17:54:52Z biological_process owl:Class GO:0036161 biolink:NamedThing calcitonin secretion The regulated release of calcitonin, a peptide hormone that participates in calcium and phosphorus metabolism, from a cell. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-26T01:30:32Z biological_process owl:Class GO:0072316 biolink:NamedThing alpha-glucan catabolic process involved in ascospore release from ascus The chemical reactions and pathways resulting in the breakdown of alpha-glucans in the ascus wall that contributes to the release of ascospores from the ascus. tmpzr1t_l9r_go_relaxed.owl alpha-glucan breakdown involved in ascospore release from ascus|alpha-glucan catabolism involved in ascospore release from ascus|alpha-glucan degradation involved in ascospore release from ascus mah 2010-10-25T05:43:52Z biological_process owl:Class GO:0048735 biolink:NamedThing haltere morphogenesis The process in which the anatomical structures of a haltere are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007482 biolink:NamedThing haltere development The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002783 biolink:NamedThing antifungal peptide biosynthetic process The chemical reactions and pathways resulting in the formation of an antifungal peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903775 biolink:NamedThing regulation of DNA double-strand break processing Any process that modulates the frequency, rate or extent of DNA double-strand break processing. tmpzr1t_l9r_go_relaxed.owl al 2015-01-06T17:08:15Z biological_process owl:Class GO:0000729 biolink:NamedThing DNA double-strand break processing The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061002 biolink:NamedThing negative regulation of dendritic spine morphogenesis Any process that decreases the rate, frequency, or extent of dendritic spine morphogenesis, the process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:34:49Z biological_process owl:Class GO:0060997 biolink:NamedThing dendritic spine morphogenesis The process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:09:57Z biological_process owl:Class GO:0051878 biolink:NamedThing lateral element assembly The cell cycle process in which lateral elements are formed. Axial elements form a proteinaceous core between the two sister chromatids of each chromosome; the two axial elements then connect along their entire lengths by fine fibers known as transverse filaments, forming the lateral elements. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007130 biolink:NamedThing synaptonemal complex assembly The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination. tmpzr1t_l9r_go_relaxed.owl synaptonemal complex formation biological_process owl:Class GO:0140648 biolink:NamedThing positive regulation of cell cycle switching, mitotic to meiotic cell cycle Any process that activates or increases the frequency, rate or extent of mitotic to meiotic cell cycle switching, the process in which a cell switches cell cycle mode from mitotic to meiotic division. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21506 pg 2021-05-25T06:18:49Z biological_process owl:Class GO:0051728 biolink:NamedThing cell cycle switching, mitotic to meiotic cell cycle The process in which a cell switches cell cycle mode from mitotic to meiotic division. tmpzr1t_l9r_go_relaxed.owl initiation of meiotic cell cycle|cell cycle switching, mitosis to meiosis|conversion to meiotic cell cycle|initiation of meiosis|conversion to meiosis|entry into meiosis|meiotic entry|entry into meiotic cell cycle GO:0042061 biological_process owl:Class GO:1901305 biolink:NamedThing negative regulation of spermidine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of spermidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of spermidine biosynthesis|down-regulation of spermidine anabolism|down regulation of spermidine biosynthesis|downregulation of spermidine formation|downregulation of spermidine biosynthetic process|inhibition of spermidine biosynthetic process|inhibition of spermidine formation|downregulation of spermidine biosynthesis|down-regulation of spermidine biosynthetic process|inhibition of spermidine synthesis|downregulation of spermidine synthesis|down regulation of spermidine biosynthetic process|negative regulation of spermidine biosynthesis|negative regulation of spermidine anabolism|down-regulation of spermidine synthesis|inhibition of spermidine anabolism|down regulation of spermidine synthesis|negative regulation of spermidine synthesis|downregulation of spermidine anabolism|down regulation of spermidine anabolism|negative regulation of spermidine formation|inhibition of spermidine biosynthesis|down-regulation of spermidine formation|down regulation of spermidine formation pm 2012-08-21T13:58:45Z biological_process owl:Class GO:0008295 biolink:NamedThing spermidine biosynthetic process The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl spermidine formation|spermidine synthesis|spermidine biosynthesis|spermidine anabolism MetaCyc:BSUBPOLYAMSYN-PWY|MetaCyc:POLYAMINSYN3-PWY biological_process owl:Class GO:1904617 biolink:NamedThing negative regulation of actin binding Any process that stops, prevents or reduces the frequency, rate or extent of actin binding. tmpzr1t_l9r_go_relaxed.owl down regulation of membrane associated actin binding|down-regulation of actin binding|downregulation of membrane associated actin binding|inhibition of actin binding|negative regulation of membrane associated actin binding|down-regulation of membrane associated actin binding|downregulation of actin binding|inhibition of membrane associated actin binding|down regulation of actin binding mr 2015-08-27T19:09:02Z biological_process owl:Class GO:0003779 biolink:NamedThing actin binding Binding to monomeric or multimeric forms of actin, including actin filaments. tmpzr1t_l9r_go_relaxed.owl membrane associated actin binding molecular_function owl:Class GO:0051102 biolink:NamedThing DNA ligation involved in DNA recombination The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA recombination. tmpzr1t_l9r_go_relaxed.owl DNA ligation during DNA recombination biological_process owl:Class GO:0061090 biolink:NamedThing positive regulation of sequestering of zinc ion Any process that increases the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:38:53Z biological_process owl:Class GO:0032119 biolink:NamedThing sequestering of zinc ion The process of binding or confining zinc ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903111 biolink:NamedThing negative regulation of single-strand break repair via homologous recombination Any process that stops, prevents or reduces the frequency, rate or extent of single-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl down regulation of single-strand break repair via homologous recombination|inhibition of single-strand break repair via homologous recombination|downregulation of single-strand break repair via homologous recombination|down-regulation of single-strand break repair via homologous recombination pr 2014-06-09T12:11:32Z biological_process owl:Class GO:1990396 biolink:NamedThing single-strand break repair via homologous recombination The error-free repair of a single-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. tmpzr1t_l9r_go_relaxed.owl bhm 2014-06-09T10:47:04Z biological_process owl:Class GO:0097042 biolink:NamedThing extrinsic component of fungal-type vacuolar membrane The component of a fungal-type vacuolar membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to fungal-type vacuolar membrane pr 2011-04-19T03:42:39Z cellular_component owl:Class GO:0002904 biolink:NamedThing positive regulation of B cell apoptotic process Any process that activates or increases the frequency, rate, or extent of B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of B cell apoptosis|upregulation of B cell apoptosis|up regulation of B cell apoptosis|stimulation of B cell apoptosis|up-regulation of B cell apoptosis|activation of B cell apoptosis biological_process owl:Class GO:0001783 biolink:NamedThing B cell apoptotic process Any apoptotic process in a B cell, a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl programmed cell death of B-cells by apoptosis|programmed cell death, B cells|programmed cell death, B-cells|programmed cell death, B-lymphocytes|B lymphocyte apoptosis|B-cell programmed cell death by apoptosis|programmed cell death of B-lymphocytes by apoptosis|B lymphocyte programmed cell death by apoptosis|apoptosis of B-lymphocytes|apoptosis of B-cells|apoptosis of B lymphocytes|apoptosis of B cells|programmed cell death, B lymphocytes|B-cell apoptosis|programmed cell death of B cells by apoptosis|B cell programmed cell death by apoptosis|B cell apoptosis|programmed cell death of B lymphocytes by apoptosis|B-lymphocyte programmed cell death by apoptosis|B-lymphocyte apoptosis biological_process owl:Class GO:0061800 biolink:NamedThing fibronectin fibril A supramolecular fiber formed from fibronectin molecules. The fibrils are 5 to 25nm in diameter and can form branched meshworks. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-24T14:04:21Z cellular_component owl:Class GO:0031904 biolink:NamedThing endosome lumen The volume enclosed by the membrane of an endosome. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1547508851 cellular_component owl:Class GO:0008917 biolink:NamedThing lipopolysaccharide N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lipopolysaccharide = UDP + N-acetyl-D-glucosaminyl-lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-lipopolysaccharide acetylglucosaminyltransferase activity|LPS N-acetylglucosaminyltransferase activity|UDP-N-acetylglucosamine-lipopolysaccharide N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:lipopolysaccharide N-acetyl-D-glucosaminyltransferase activity MetaCyc:2.4.1.56-RXN|EC:2.4.1.56 molecular_function owl:Class GO:0086099 biolink:NamedThing phospholipase C-activating angiotensin-activated signaling pathway involved in heart process An angiotensin-mediated signaling pathway that contributes to a circulatory system process carried out by the heart, where the activated receptor transmits the signal via Gq-mediated activation of phospholipase C (PLC). PLC hydrolyses phosphatidylinositol 4,5-bisphosphate (PIP2) into the second messengers inositol-1,4,5,-triphosphate (IP3) and diacylglycerol (DAG). DAG activates protein kinase C (PKC), whilst IP3 binds intracellular receptors to induce the release of Ca2+ from intracellular stores. tmpzr1t_l9r_go_relaxed.owl PLC-activating angiotensin receptor signaling pathway involved in heart process|Gq-coupled angiotensin receptor signaling pathway involved in heart process|angiotensin receptor signaling pathway via activation of phospholipase C involved in heart process|phospholipase C-activating angiotensin-mediated signaling pathway involved in heart process|cardiac angiotensin receptor signaling pathway via activation of PLC bf biological_process owl:Class GO:1990751 biolink:NamedThing Schwann cell chemotaxis The directed movement of a Schwann cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl sl 2015-05-21T19:19:09Z biological_process owl:Class GO:0060126 biolink:NamedThing somatotropin secreting cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. tmpzr1t_l9r_go_relaxed.owl somatotrophin secreting cell differentiation|somatotroph differentiation|somatrophic cell differentiation|somatotrope differentiation|growth hormone secreting cell differentiation|somatotropic cell differentiation biological_process owl:Class GO:0048525 biolink:NamedThing negative regulation of viral process Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant. tmpzr1t_l9r_go_relaxed.owl negative regulation of viral reproduction|negative regulation of viral life cycle|down-regulation of viral life cycle|down regulation of viral life cycle|downregulation of viral life cycle|inhibition of viral life cycle biological_process owl:Class GO:0061061 biolink:NamedThing muscle structure development The progression of a muscle structure over time, from its formation to its mature state. Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-09T08:55:14Z biological_process owl:Class GO:2000871 biolink:NamedThing negative regulation of progesterone secretion Any process that stops, prevents or reduces the frequency, rate or extent of progesterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:51:19Z biological_process owl:Class GO:0050832 biolink:NamedThing defense response to fungus Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl resistance response to pathogenic fungus|response to parasitic fungus|defence response to fungus|defense response to fungus, incompatible interaction|defense response to fungi|resistance response to pathogenic fungi|defence response to fungi|response to parasitic fungi GO:0009817|GO:0009623|GO:0042831 biological_process owl:Class GO:0010133 biolink:NamedThing proline catabolic process to glutamate The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including glutamate. tmpzr1t_l9r_go_relaxed.owl proline degradation to glutamate|proline oxidation|proline breakdown to glutamate MetaCyc:PWY-4561|MetaCyc:PROUT-PWY GO:0019494 biological_process owl:Class GO:0070716 biolink:NamedThing mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication A mismatch repair process that corrects errors introduced that ensures the accuracy of DNA replication. tmpzr1t_l9r_go_relaxed.owl mismatch repair involved in maintenance of fidelity during DNA-dependent DNA replication mah 2009-06-09T04:00:29Z biological_process owl:Class GO:0045956 biolink:NamedThing positive regulation of calcium ion-dependent exocytosis Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion-dependent exocytosis|stimulation of calcium ion-dependent exocytosis|up regulation of calcium ion-dependent exocytosis|activation of calcium ion-dependent exocytosis|upregulation of calcium ion-dependent exocytosis biological_process owl:Class GO:0062094 biolink:NamedThing stomach development The process whose specific outcome is the progression of the stomach over time, from its formation to the mature structure. The stomach is an expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-20T18:15:45Z biological_process owl:Class GO:0000457 biolink:NamedThing endonucleolytic cleavage between SSU-rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S) Endonucleolytic cleavage to separate a pre-SSU-rRNA from a pre-LSU-rRNA originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the Large Subunit (LSU) rRNA, and the 5S rRNA, in that order, from 5' to 3' along the primary transcript. Note that the use of the word tricistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000481 biolink:NamedThing positive regulation of cAMP-dependent protein kinase activity Any process that activates or increases the frequency, rate or extent of cAMP-dependent protein kinase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of cAMP-dependent protein kinase, intrinsic catalyst activity|positive regulation of cyclic AMP-dependent protein kinase activity|positive regulation of 3',5'-cAMP-dependent protein kinase activity|positive regulation of PKA|positive regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity|positive regulation of PKA C|positive regulation of AMPK|positive regulation of 3',5' cAMP-dependent protein kinase activity|positive regulation of STK22|positive regulation of ATP:protein phosphotransferase (cAMP-dependent) activity|positive regulation of protein kinase A activity yaf 2011-03-10T11:14:17Z biological_process owl:Class GO:0019962 biolink:NamedThing type I interferon binding Binding to a type I interferon. Type I interferons include the interferon-alpha, beta, delta, epsilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl interferon-zeta binding|interferon-alpha binding|interferon-beta binding|interferon-alpha/beta binding|interferon-omega binding|interferon-tau binding|type I IFN binding|interferon-kappa binding|interferon-epsilon binding|interferon-delta binding molecular_function owl:Class GO:0006509 biolink:NamedThing membrane protein ectodomain proteolysis The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain). tmpzr1t_l9r_go_relaxed.owl ectoderm shedding|receptor shedding|ectodomain cleavage|membrane protein solubilization biological_process owl:Class GO:1902796 biolink:NamedThing regulation of snoRNA processing Any process that modulates the frequency, rate or extent of snoRNA processing. tmpzr1t_l9r_go_relaxed.owl mah 2014-03-24T12:47:02Z biological_process owl:Class GO:0043144 biolink:NamedThing sno(s)RNA processing Any process involved in the conversion of a primary snoRNA family RNA transcript into a mature snoRNA (eukaryota) or sRNA (archaea). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:1901343 biolink:NamedThing negative regulation of vasculature development Any process that stops, prevents or reduces the frequency, rate or extent of vasculature development. tmpzr1t_l9r_go_relaxed.owl inhibition of vasculature development|downregulation of vasculature development|inhibition of vascular system development|down regulation of vasculature development|downregulation of vascular system development|down-regulation of vasculature development|down-regulation of vascular system development|negative regulation of vascular system development|down regulation of vascular system development bf 2012-09-06T09:17:24Z biological_process owl:Class GO:0043248 biolink:NamedThing proteasome assembly The aggregation, arrangement and bonding together of a mature, active proteasome complex. tmpzr1t_l9r_go_relaxed.owl proteasome complex assembly|proteasome maturation|26S proteasome assembly biological_process owl:Class GO:0043253 biolink:NamedThing chloroplast ribosome A ribosome contained within a chloroplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0038180 biolink:NamedThing nerve growth factor signaling pathway A series of molecular signals initiated by the binding of nerve growth factor (NGF) to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl NGF signaling pathway|nerve growth factor signalling pathway Wikipedia:Nerve_growth_factor Nerve growth factor (NGF) binds at least two classes of receptors: the p75 LNGFR (low-affinity nerve growth factor receptor) and TrkA, a transmembrane tyrosine kinase. bf 2013-05-15T11:04:05Z biological_process owl:Class GO:1990090 biolink:NamedThing cellular response to nerve growth factor stimulus A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to NGF sl 2013-05-06T17:13:36Z biological_process owl:Class GO:0150047 biolink:NamedThing G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential G protein-coupled neurotransmitter receptor activity, occurring in the presynaptic membrane, involved in regulation of presynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl G-protein coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential bc 2018-04-23T10:51:20Z molecular_function owl:Class GO:0099505 biolink:NamedThing regulation of presynaptic membrane potential Any process that modulates the potential difference across a presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl regulation of pre-synaptic membrane potential biological_process owl:Class GO:0005894 biolink:NamedThing interleukin-3 receptor complex A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-3 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-5. tmpzr1t_l9r_go_relaxed.owl IL-3 receptor complex cellular_component owl:Class GO:1903132 biolink:NamedThing regulation of tube lumen cavitation Any process that modulates the frequency, rate or extent of tube lumen cavitation. tmpzr1t_l9r_go_relaxed.owl dph 2014-06-25T20:18:58Z biological_process owl:Class GO:0060605 biolink:NamedThing tube lumen cavitation The formation of a lumen by hollowing out a solid rod or cord. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T09:39:49Z biological_process owl:Class GO:0021803 biolink:NamedThing extension of leading cell process to pial surface The extension of a long process to the pial surface as a cell leaves the ventricular zone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021802 biolink:NamedThing somal translocation The radial migration of cells from the ventricular zone that is independent of radial glial cells. Cells extend processes that terminate at the pial surface and follow the processes as they migrate. tmpzr1t_l9r_go_relaxed.owl perikaryal translocation of Morest biological_process owl:Class GO:0007569 biolink:NamedThing cell aging An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469). tmpzr1t_l9r_go_relaxed.owl cell ageing biological_process owl:Class GO:0034117 biolink:NamedThing erythrocyte aggregation The adhesion of one erythrocyte to one or more other erythrocytes via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl RBC aggregation|red blood cell aggregation biological_process owl:Class GO:0101002 biolink:NamedThing ficolin-1-rich granule Highly exocytosable gelatinase-poor granules found in neutrophils and rich in ficolin-1. Ficolin-1 is released from neutrophil granules by stimulation with fMLP or PMA, and the majority becomes associated with the surface membrane of the cells and can be detected by flow cytometry. tmpzr1t_l9r_go_relaxed.owl ficolin-1 rich granule|ficolin granule cellular_component owl:Class GO:0002469 biolink:NamedThing myeloid dendritic cell antigen processing and presentation The process in which a myeloid dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015932 biolink:NamedThing nucleobase-containing compound transmembrane transporter activity Enables the transfer of nucleobases, nucleosides, nucleotides and nucleic acids from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity molecular_function owl:Class GO:0072309 biolink:NamedThing mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis The process in which an organism retains a population of mesenchymal stem cells that contributes to the shaping of a nephron in the metanephros. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0031135 biolink:NamedThing negative regulation of conjugation Any process that decreases the rate of conjugation. tmpzr1t_l9r_go_relaxed.owl inhibition of conjugation|downregulation of conjugation|down-regulation of conjugation|down regulation of conjugation biological_process owl:Class GO:0061936 biolink:NamedThing fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm The binding and fusion of a sperm, with the plasma membrane of the oocyte as part of the process of double fertilization forming a zygote and endosperm. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T18:43:24Z biological_process owl:Class GO:0002278 biolink:NamedThing eosinophil activation involved in immune response The change in morphology and behavior of a eosinophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl eosinophil activation during immune response biological_process owl:Class GO:1904092 biolink:NamedThing regulation of autophagic cell death Any process that modulates the frequency, rate or extent of autophagic cell death. tmpzr1t_l9r_go_relaxed.owl regulation of programmed cell death by autophagy|regulation of programmed cell death by macroautophagy|regulation of autophagic death|regulation of type II programmed cell death bhm 2015-03-26T16:41:32Z biological_process owl:Class GO:0048102 biolink:NamedThing autophagic cell death A form of programmed cell death that is accompanied by the formation of autophagosomes. Autophagic cell death is characterized by lack of chromatin condensation and massive vacuolization of the cytoplasm, with little or no uptake by phagocytic cells. tmpzr1t_l9r_go_relaxed.owl autosis|autophagic death|type II programmed cell death|programmed cell death by autophagy|programmed cell death by macroautophagy The precise nature of autophagic cell death is still being debated, and the link between autophagy and cell death unclear. As autophagy is often induced under conditions of stress that could also lead to cell death, there has been a propagation of the idea that autophagy can act as a cell death mechanism; but others suggest that autophagy may simply be an attempt of dying cells to adapt to lethal stress rather than a mechanism to execute a cell death program. Further studies are required to resolve this controversy (see e.g. PMID:22082964, PMID:22052193, PMID:25236395). In the meantime, curators should carefully examine the experimental evidence presented in papers concerning autophagic cell death, and annotate accordingly. Recently, an instance of autophagic cell death, termed autosis, was discovered that relies on the plasma membrane Na+/K+-ATPase. Autosis was observed in vivo in the brain of rats subjected to an ischemic insult. It's still unclear if all cases of autophagic cell death require the Na+/K+-ATPase or not. biological_process owl:Class GO:0071700 biolink:NamedThing olfactory placode maturation A developmental process, independent of morphogenetic (shape) change, that is required for the olfactory placode to attain its fully functional state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T01:10:54Z biological_process owl:Class GO:0071698 biolink:NamedThing olfactory placode development The progression of the olfactory placode over time from its initial formation until its mature state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T12:45:14Z biological_process owl:Class GO:0032112 biolink:NamedThing negative regulation of protein histidine kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of protein histidine kinase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of protein histidine kinase activity|protein histidine kinase inhibitor|down-regulation of protein histidine kinase activity|inhibition of protein histidine kinase activity|down regulation of protein histidine kinase activity biological_process owl:Class GO:0002737 biolink:NamedThing negative regulation of plasmacytoid dendritic cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of plasmacytoid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl downregulation of plasmacytoid dendritic cell cytokine production|down-regulation of plasmacytoid dendritic cell cytokine production|inhibition of plasmacytoid dendritic cell cytokine production|down regulation of plasmacytoid dendritic cell cytokine production biological_process owl:Class GO:0002373 biolink:NamedThing plasmacytoid dendritic cell cytokine production Any process that contributes to cytokine production by a plasmacytoid dendritic cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0055026 biolink:NamedThing negative regulation of cardiac muscle tissue development Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle tissue development. tmpzr1t_l9r_go_relaxed.owl downregulation of cardiac muscle development|negative regulation of heart muscle development|inhibition of cardiac muscle development|down regulation of cardiac muscle development|down-regulation of cardiac muscle development biological_process owl:Class GO:2000947 biolink:NamedThing positive regulation of amylopectin catabolic process Any process that activates or increases the frequency, rate or extent of amylopectin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of Amylopectin catabolism tt 2011-08-01T02:15:32Z biological_process owl:Class GO:2000897 biolink:NamedThing amylopectin catabolic process The chemical reactions and pathways resulting in the breakdown of an amylopectin. tmpzr1t_l9r_go_relaxed.owl Amylopectin catabolism jl 2011-07-28T02:47:28Z biological_process owl:Class GO:0010615 biolink:NamedThing positive regulation of cardiac muscle adaptation Any process that increases the rate, extent or frequency of the process in which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045010 biolink:NamedThing actin nucleation The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. tmpzr1t_l9r_go_relaxed.owl actin filament nucleation https://github.com/geneontology/go-ontology/issues/20313 biological_process owl:Class GO:0030184 biolink:NamedThing nitric oxide transmembrane transporter activity Enables the transfer of nitric oxide, nitrogen monoxide, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030185 biolink:NamedThing nitric oxide transport The directed movement of nitric oxide, nitrogen monoxide, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010606 biolink:NamedThing positive regulation of cytoplasmic mRNA processing body assembly Any process that increases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033962 biolink:NamedThing P-body assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. tmpzr1t_l9r_go_relaxed.owl cytoplasmic mRNA processing body assembly|P body assembly|P body biogenesis https://github.com/geneontology/go-ontology/issues/19857 biological_process owl:Class GO:0035463 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in determination of left/right asymmetry A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to determination of organismal asymmetry with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl TGFbeta receptor signaling pathway involved in determination of left/right asymmetry|TGF-beta receptor signaling pathway involved in determination of left/right asymmetry|transforming growth factor beta receptor signalling pathway involved in determination of left/right asymmetry|TGFbeta receptor signalling pathway involved in determination of left/right asymmetry|TGF-beta receptor signalling pathway involved in determination of left/right asymmetry bf 2010-04-19T01:19:20Z biological_process owl:Class GO:1900572 biolink:NamedThing diorcinol biosynthetic process The chemical reactions and pathways resulting in the formation of diorcinol. tmpzr1t_l9r_go_relaxed.owl diorcinol formation|diorcinol biosynthesis|diorcinol synthesis|diorcinol anabolism di 2012-05-15T06:35:29Z biological_process owl:Class GO:2000120 biolink:NamedThing positive regulation of sodium-dependent phosphate transport Any process that activates or increases the frequency, rate or extent of sodium-dependent phosphate transport. tmpzr1t_l9r_go_relaxed.owl jl 2010-09-23T01:35:06Z biological_process owl:Class GO:0044341 biolink:NamedThing sodium-dependent phosphate transport The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore, by a mechanism dependent upon sodium ions. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T04:16:15Z biological_process owl:Class GO:0097399 biolink:NamedThing interleukin-32-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-32 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-32-mediated signalling pathway|IL-32-mediated signalling pathway|IL-32-mediated signaling pathway pr 2012-10-23T13:27:22Z biological_process owl:Class GO:0097397 biolink:NamedThing cellular response to interleukin-32 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-32 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-32 pr 2012-10-23T13:23:22Z biological_process owl:Class GO:0033700 biolink:NamedThing phospholipid efflux The directed movement of a phospholipid out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl phospholipid export biological_process owl:Class GO:0036398 biolink:NamedThing TCR signalosome A multi-protein complex containing at least the T-cell receptor complex and the LAT (linker for activation of T cells) scaffold protein. Also contains a variety of signaling proteins including co-receptors, kinases, phosphatases and adaptors such as CD8. Connects events on the plasma membrane to distal signaling cascades to ultimately modulate T cell biology. tmpzr1t_l9r_go_relaxed.owl LAT signalosome|linker for activation of T cells signalosome bf 2013-07-18T13:52:24Z cellular_component owl:Class GO:1900534 biolink:NamedThing palmitic acid catabolic process The chemical reactions and pathways resulting in the breakdown of palmitic acid. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-09T07:04:56Z biological_process owl:Class GO:0150143 biolink:NamedThing regulation of CD80 production Any process that modulates the frequency, rate or extent of CD80 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of CD80 biosynthetic process bc 2019-12-08T10:23:43Z biological_process owl:Class GO:0035780 biolink:NamedThing CD80 biosynthetic process The chemical reactions and pathways resulting in the formation of CD80, a CD marker that occurs on antigen presenting cells such as activated B cells and monocytes that provides a co-stimulatory signal necessary for T cell activation and survival. tmpzr1t_l9r_go_relaxed.owl CD80 anabolism|CD80 formation|CD80 synthesis|CD80 biosynthesis bf 2011-04-04T11:18:41Z biological_process owl:Class GO:1990900 biolink:NamedThing ciliary pocket collar A constriction site at the junction of the plasma, flagellar and flagellar pocket membranes where the flagellum emerges from the cell body. Observed in some unicellular eukaryotic species such as Chlamydomonas, Giardia and Trypanosoma. tmpzr1t_l9r_go_relaxed.owl flagellum pocket collar|cilium pocket collar|flagellar pocket collar|flagellar pore|FPC|flagellar collar Note that a 'flagellar collar' is described in Choanoflagellates, but this is different from the ciliary pocket collar found e.g. in Giardia; in Choanoflagellates, a single apical flagellum is surrounded by a collar of 30-40 microvilli. pr 2015-11-17T14:43:55Z cellular_component owl:Class GO:0020016 biolink:NamedThing ciliary pocket Invagination of the plasma membrane from which a cilium (also called flagellum) protrudes. tmpzr1t_l9r_go_relaxed.owl cilial pocket|cilium pocket|flagellar pocket Note that cilia and eukaryotic flagella are deemed to be equivalent. In this case community usage is mostly 'flagellar', but the primary term name reflects the cilium parentage. cellular_component owl:Class GO:1903007 biolink:NamedThing positive regulation of Lys63-specific deubiquitinase activity Any process that activates or increases the frequency, rate or extent of Lys63-specific deubiquitinase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of Lys63-specific deubiquitinase activity|activation of Lys63-specific deubiquitinase activity|up-regulation of Lys63-specific deubiquitinase activity|upregulation of Lys63-specific deubiquitinase activity bf 2014-05-12T15:47:35Z biological_process owl:Class GO:0061578 biolink:NamedThing Lys63-specific deubiquitinase activity Hydrolysis of Lys63-Linked ubiquitin unit(s) from a ubiquitinated protein. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5696547|Reactome:R-HSA-5691431|Reactome:R-HSA-5357845|Reactome:R-HSA-936381|Reactome:R-HSA-5690856|Reactome:R-HSA-5691411|Reactome:R-HSA-936390|Reactome:R-HSA-8869506|Reactome:R-HSA-688136|Reactome:R-HSA-741411|Reactome:R-HSA-5691439 dph 2013-11-15T19:13:12Z molecular_function owl:Class GO:0015568 biolink:NamedThing L-idonate transmembrane transporter activity Enables the transfer of L-idonate from one side of a membrane to the other. L-idonate is an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate/D-gluconate:hydrogen symporter activity molecular_function owl:Class GO:0015726 biolink:NamedThing L-idonate transmembrane transport The process in which L-idonate is transported across a lipid bilayer, from one side of a membrane to the other. L-idonate is an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate transport biological_process owl:Class GO:0051651 biolink:NamedThing maintenance of location in cell Any process in which a substance or cellular entity, such as a protein complex or organelle, is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl cellular storage|cellular retention|intracellular sequestering|intracellular retention|maintenance of localization within cell|intracellular storage|maintenance of localization in cell|sequestering within cell|maintenance of cellular localization|cellular sequestering|maintenance of intracellular localization|storage within cell|retention within cell biological_process owl:Class GO:0048889 biolink:NamedThing neuromast support cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035393 biolink:NamedThing chemokine (C-X-C motif) ligand 9 production The appearance of chemokine (C-X-C motif) ligand 9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CXCL9 production|Monokine induced by gamma interferon production|MIG production bf 2010-03-23T10:03:20Z biological_process owl:Class GO:0071639 biolink:NamedThing positive regulation of monocyte chemotactic protein-1 production Any process that activates or increases the frequency, rate, or extent of production of monocyte chemotactic protein-1. tmpzr1t_l9r_go_relaxed.owl positive regulation of MCP-1 production|positive regulation of CCL2 production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0071605 biolink:NamedThing monocyte chemotactic protein-1 production The appearance of monocyte chemotactic protein-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl MCP-1 production|CCL2 production mah 2010-02-05T04:09:53Z biological_process owl:Class GO:0048232 biolink:NamedThing male gamete generation Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001655 biolink:NamedThing urogenital system development The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002514 biolink:NamedThing B cell tolerance induction A process involving any mechanism for tolerance induction in B cells. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte tolerance induction|B lymphocyte tolerance induction|B-cell tolerance induction biological_process owl:Class GO:0043045 biolink:NamedThing DNA methylation involved in embryo development The covalent transfer of a methyl group to C-5 of cytosine that contributes to the epigenetic regulation of embryonic gene expression. tmpzr1t_l9r_go_relaxed.owl de novo DNA methylation biological_process owl:Class GO:2001254 biolink:NamedThing negative regulation of histone H3-K36 trimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K36 trimethylation. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-06T07:38:17Z biological_process owl:Class GO:0097198 biolink:NamedThing histone H3-K36 trimethylation The modification of histone H3 by addition of three methyl groups to lysine at position 36 of the histone. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-05T01:19:45Z biological_process owl:Class GO:0043931 biolink:NamedThing ossification involved in bone maturation The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone, involved in the progression of the skeleton from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl ossification involved in skeletal development|ossification involved in bone modeling biological_process owl:Class GO:0002760 biolink:NamedThing positive regulation of antimicrobial humoral response Any process that activates or increases the frequency, rate, or extent of an antimicrobial humoral response. tmpzr1t_l9r_go_relaxed.owl activation of antimicrobial humoral response|up-regulation of antimicrobial humoral response|stimulation of antimicrobial humoral response|up regulation of antimicrobial humoral response|upregulation of antimicrobial humoral response biological_process owl:Class GO:0045041 biolink:NamedThing protein import into mitochondrial intermembrane space The import of proteins into the space between the inner and outer mitochondrial membranes. tmpzr1t_l9r_go_relaxed.owl protein import into mitochondrial IMS|protein import into mitochondrial intermembrane space, nonconservative|protein transport into mitochondrial IMS|protein import into mitochondrial intermembrane space, direct|protein transport into mitochondrial intermembrane space|mitochondrial intermembrane space protein import GO:0045043|GO:0045044 biological_process owl:Class GO:0072076 biolink:NamedThing nephrogenic mesenchyme development The biological process whose specific outcome is the progression of a nephrogenic mesenchyme from an initial condition to its mature state. This process begins with the formation of nephrogenic mesenchyme and ends with the mature structure. Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:40:44Z biological_process owl:Class GO:0032747 biolink:NamedThing positive regulation of interleukin-23 production Any process that activates or increases the frequency, rate, or extent of interleukin-23 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-23 production|upregulation of interleukin-23 production|positive regulation of interleukin-23 biosynthetic process|positive regulation of IL-23 production|up regulation of interleukin-23 production|up-regulation of interleukin-23 production|activation of interleukin-23 production GO:0045398 biological_process owl:Class GO:0032627 biolink:NamedThing interleukin-23 production The appearance of interleukin-23 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-23 secretion|IL-23 production|interleukin-23 biosynthetic process GO:0072621|GO:0042240 biological_process owl:Class GO:1903238 biolink:NamedThing positive regulation of leukocyte tethering or rolling Any process that activates or increases the frequency, rate or extent of leukocyte tethering or rolling. tmpzr1t_l9r_go_relaxed.owl activation of leukocyte tethering or rolling|up regulation of leukocyte tethering or rolling|up-regulation of leukocyte tethering or rolling|upregulation of leukocyte tethering or rolling als 2014-07-31T13:08:01Z biological_process owl:Class GO:0050901 biolink:NamedThing leukocyte tethering or rolling Transient adhesive interactions between leukocytes and endothelial cells lining blood vessels. Carbohydrates on circulating leukocytes bind selectins on the vessel wall causing the leukocytes to slow down and roll along the inner surface of the vessel wall. During this rolling motion, transitory bonds are formed and broken between selectins and their ligands. Typically the first step in cellular extravasation (the movement of leukocytes out of the circulatory system, towards the site of tissue damage or infection). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12276#issuecomment-185260139|https://github.com/geneontology/go-ontology/issues/20174 biological_process owl:Class GO:0045804 biolink:NamedThing negative regulation of eclosion Any process that stops, prevents, or reduces the frequency, rate or extent of eclosion. tmpzr1t_l9r_go_relaxed.owl down-regulation of eclosion|down regulation of eclosion|downregulation of eclosion|inhibition of eclosion biological_process owl:Class GO:0007562 biolink:NamedThing eclosion The emergence of an adult insect from a pupa case. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pupa#Emergence biological_process owl:Class GO:0071805 biolink:NamedThing potassium ion transmembrane transport A process in which a potassium ion is transported from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl potassium ion membrane transport|high affinity potassium ion uptake|high-affinity potassium ion uptake|high-affinity potassium ion import|high affinity potassium ion import Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-09-03T02:43:49Z GO:0010163 biological_process owl:Class GO:1900484 biolink:NamedThing negative regulation of protein targeting to vacuolar membrane Any process that stops, prevents or reduces the frequency, rate or extent of protein targeting to vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl downregulation of protein targeting to vacuolar membrane|down-regulation of protein targeting to vacuolar membrane|down regulation of protein targeting to vacuolar membrane|inhibition of protein targeting to vacuolar membrane al 2012-05-02T10:13:33Z biological_process owl:Class GO:0044395 biolink:NamedThing protein targeting to vacuolar membrane The process of directing proteins towards the vacuolar membrane; usually uses signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-21T02:54:44Z biological_process owl:Class GO:1905744 biolink:NamedThing regulation of mRNA cis splicing, via spliceosome Any process that modulates the frequency, rate or extent of mRNA cis splicing, via spliceosome. tmpzr1t_l9r_go_relaxed.owl regulation of nuclear mRNA cis splicing, via U2-type spliceosome|regulation of nuclear mRNA cis splicing, via spliceosome|regulation of splicing vw 2016-12-07T14:01:33Z biological_process owl:Class GO:0045292 biolink:NamedThing mRNA cis splicing, via spliceosome The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript. tmpzr1t_l9r_go_relaxed.owl splicing|nuclear mRNA cis splicing, via spliceosome|nuclear mRNA cis splicing, via U2-type spliceosome biological_process owl:Class GO:1905221 biolink:NamedThing positive regulation of platelet formation Any process that activates or increases the frequency, rate or extent of platelet formation. tmpzr1t_l9r_go_relaxed.owl activation of platelet formation|up-regulation of platelet extrusion|up-regulation of platelet formation|positive regulation of platelet extrusion|up regulation of platelet extrusion|activation of platelet extrusion|up regulation of platelet formation|upregulation of platelet extrusion|upregulation of platelet formation sl 2016-06-06T22:16:02Z biological_process owl:Class GO:0030220 biolink:NamedThing platelet formation The process in which platelets bud from long processes extended by megakaryocytes. tmpzr1t_l9r_go_relaxed.owl platelet extrusion biological_process owl:Class GO:0010784 biolink:NamedThing proboscis morphogenesis, clypeo-labral disc-derived The process in which the anatomical structures of the proboscis that are derived from the clypeo-labral disc are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905434 biolink:NamedThing positive regulation of retrograde trans-synaptic signaling by neuropeptide Any process that activates or increases the frequency, rate or extent of retrograde trans-synaptic signaling by neuropeptide. tmpzr1t_l9r_go_relaxed.owl up-regulation of retrograde trans-synaptic signaling by neuropeptide|up regulation of retrograde trans-synaptic signaling by neuropeptide|positive regulation of neuropeptide-mediated retrograde trans-synaptic signaling|upregulation of retrograde trans-synaptic signaling by neuropeptide|activation of retrograde trans-synaptic signaling by neuropeptide bf 2016-09-14T10:57:02Z biological_process owl:Class GO:0099082 biolink:NamedThing retrograde trans-synaptic signaling by neuropeptide Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a neuropeptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007004 biolink:NamedThing telomere maintenance via telomerase The maintenance of proper telomeric length by the addition of telomeric repeats by telomerase. tmpzr1t_l9r_go_relaxed.owl telomerase-dependent telomere maintenance biological_process owl:Class GO:0042110 biolink:NamedThing T cell activation The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl T-cell activation|T-lymphocyte activation|T lymphocyte activation biological_process owl:Class GO:0008009 biolink:NamedThing chemokine activity The function of a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060326 biolink:NamedThing cell chemotaxis The directed movement of a motile cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031967 biolink:NamedThing organelle envelope A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904521 biolink:NamedThing negative regulation of myofibroblast cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of myofibroblast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of MFB apoptosis|down regulation of myofibroblast cell apoptotic process|down regulation of MFB apoptosis|negative regulation of myofibroblast cell apoptosis|negative regulation of MFB apoptotic process|down-regulation of myofibroblast cell apoptotic process|downregulation of myofibroblast cell apoptotic process|inhibition of myofibroblast cell apoptotic process|down-regulation of MFB apoptotic process|downregulation of myofibroblast cell apoptosis|down regulation of myofibroblast cell apoptosis|downregulation of MFB apoptotic process|down-regulation of myofibroblast cell apoptosis|inhibition of MFB apoptotic process|inhibition of myofibroblast cell apoptosis|down-regulation of MFB apoptosis|negative regulation of MFB apoptosis|downregulation of MFB apoptosis|down regulation of MFB apoptotic process sl 2015-07-29T15:52:20Z biological_process owl:Class GO:0075041 biolink:NamedThing positive regulation of establishment of turgor in appressorium Any process that activates or increases the frequency, rate or extent of turgor formation in the symbiont appressorium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150155 biolink:NamedThing interleukin-34 production The appearance of interleukin-34 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-06T16:25:25Z biological_process owl:Class GO:0030094 biolink:NamedThing plasma membrane-derived photosystem I A protein complex located in the plasma membrane-derived thylakoid. The photosystem functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin. Examples of this complex are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl plasma membrane photosystem I cellular_component owl:Class GO:0061236 biolink:NamedThing mesonephric comma-shaped body morphogenesis The process in which the mesonephric comma-shaped body is generated and organized. The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:00:21Z biological_process owl:Class GO:0003016 biolink:NamedThing respiratory system process A process carried out by the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange. tmpzr1t_l9r_go_relaxed.owl respiratory gaseous exchange GO:0010802 biological_process owl:Class GO:0043598 biolink:NamedThing cytoplasmic DNA replication factor C complex A cytoplasmic complex of two polypeptides that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. Examples of this component are found in prokaryotic species. tmpzr1t_l9r_go_relaxed.owl cytoplasmic RFC|cytoplasmic clamp loader cellular_component owl:Class GO:0030981 biolink:NamedThing cortical microtubule cytoskeleton The portion of the microtubule cytoskeleton that lies just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060263 biolink:NamedThing regulation of respiratory burst Any process that modulates the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902845 biolink:NamedThing negative regulation of mitotic spindle elongation Any process that stops, prevents or reduces the frequency, rate or extent of mitotic spindle elongation. tmpzr1t_l9r_go_relaxed.owl down regulation of mitotic spindle elongation|downregulation of mitotic spindle elongation|negative regulation of spindle elongation during mitosis|downregulation of spindle elongation during mitosis|down regulation of spindle elongation during mitosis|down-regulation of mitotic spindle elongation|down-regulation of spindle elongation during mitosis|inhibition of mitotic spindle elongation|inhibition of spindle elongation during mitosis vw 2014-04-02T08:43:28Z biological_process owl:Class GO:0002296 biolink:NamedThing T-helper 1 cell lineage commitment The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 1 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis. tmpzr1t_l9r_go_relaxed.owl T-helper 1 cell fate commitment|Th1 cell lineage commitment|Th1 fate commitment biological_process owl:Class GO:0043404 biolink:NamedThing corticotropin-releasing hormone receptor activity Combining with corticotropin-releasing hormone and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CRF receptor activity|corticotropin-releasing factor receptor activity|adrenocorticotropin-releasing hormone receptor activity|CRH receptor activity GO:0031636 molecular_function owl:Class GO:1903912 biolink:NamedThing negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation Any process that stops, prevents or reduces the frequency, rate or extent of endoplasmic reticulum stress-induced eiF2alpha phosphorylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress|down-regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress|negative regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress|down regulation of eiF2alpha phosphorylation in response to ER stress|inhibition of eiF2alpha phosphorylation in response to ER stress|downregulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress|inhibition of eiF2alpha phosphorylation in response to endoplasmic reticulum stress|down-regulation of eiF2alpha phosphorylation in response to ER stress|down-regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress|negative regulation of ER stress-induced eIF2 alpha phosphorylation|down regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress|inhibition of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress|negative regulation of eiF2alpha phosphorylation in response to ER stress|down regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress|downregulation of eiF2alpha phosphorylation in response to ER stress|downregulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress bf 2015-02-09T10:58:55Z biological_process owl:Class GO:0036492 biolink:NamedThing eiF2alpha phosphorylation in response to endoplasmic reticulum stress The addition of a phosphate group on to the translation initiation factor eIF2alpha, as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl eiF2alpha phosphorylation in response to ER stress|regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress bf 2015-02-05T09:53:21Z biological_process owl:Class GO:0005859 biolink:NamedThing muscle myosin complex A filament of myosin found in a muscle cell of any type. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0101025 biolink:NamedThing nuclear membrane biogenesis The process in which a nuclear membrane is synthesized, aggregates, and bonds together. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071763 biolink:NamedThing nuclear membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner or outer membrane. tmpzr1t_l9r_go_relaxed.owl nuclear membrane organisation|nuclear membrane organization and biogenesis mah 2010-03-29T03:59:35Z biological_process owl:Class GO:0007398 biolink:NamedThing ectoderm development The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038058 biolink:NamedThing TNFSF11 receptor activity Combining with a tumor necrosis factor ligand superfamily member 11 (TNFSF11) and transmitting the signal across the cell membrane to initiate a change in cell activity or function. tmpzr1t_l9r_go_relaxed.owl tumor necrosis factor ligand superfamily member 11 receptor activity|RANKL receptor activity bf 2012-01-04T03:31:54Z molecular_function owl:Class GO:0071847 biolink:NamedThing TNFSF11-mediated signaling pathway A series of molecular signals initiated by the binding of tumor necrosis factor ligand superfamily member 11 (TNFSF11) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl RANKL-mediated signaling pathway|tumor necrosis factor superfamily member 11-mediated signaling pathway|TNF-related activation-induced cytokine-mediated signaling pathway|TNFSF11-mediated signalling pathway|receptor activator of nuclear factor kappa-B ligand signaling pathway mah 2010-09-10T02:22:42Z biological_process owl:Class GO:0060798 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in mesodermal cell fate specification The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of a mesodermal fate. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in mesodermal cell fate specification dph 2009-08-06T11:16:11Z biological_process owl:Class GO:2000786 biolink:NamedThing positive regulation of autophagosome assembly Any process that activates or increases the frequency, rate or extent of autophagic vacuole assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of autophagic vacuole formation|positive regulation of autophagic vacuole assembly|positive regulation of autophagosome formation|positive regulation of PAS formation|positive regulation of autophagosome biosynthesis rl 2011-06-24T11:19:12Z biological_process owl:Class GO:0071212 biolink:NamedThing subsynaptic reticulum An elaborate tubulolamellar membrane system that underlies the postsynaptic cell membrane. tmpzr1t_l9r_go_relaxed.owl SSR mah 2009-12-01T05:05:21Z cellular_component owl:Class GO:0044544 biolink:NamedThing envenomation resulting in plasminogen activation in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with the activation of plasminogen into plasmin in the bitten organism. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-22T11:54:49Z biological_process owl:Class GO:2000712 biolink:NamedThing regulation of maintenance of meiotic sister chromatid cohesion, arms Any process that modulates the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of sister chromatin cohesion along arms at meiosis I|regulation of maintenance of meiotic sister chromatin cohesion along arms mah 2011-06-01T12:45:35Z biological_process owl:Class GO:0002071 biolink:NamedThing glandular epithelial cell maturation The developmental process, independent of morphogenetic (shape) change, that is required for a glandular epithelial cell to attain its fully functional state. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036011 biolink:NamedThing imaginal disc-derived leg segmentation Division of an imaginal disc-derived leg into a series of semi-repetitive parts or segments. The Drosophila leg, for example, has nine segments, each separated from the next by a flexible joint. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-07T04:37:17Z biological_process owl:Class GO:0007480 biolink:NamedThing imaginal disc-derived leg morphogenesis The process in which the anatomical structures of a leg derived from an imaginal disc are generated and organized. A leg is a limb on which an animal walks and stands. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046696 biolink:NamedThing lipopolysaccharide receptor complex A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated and which functions as a lipopolysaccharide (LPS) receptor that primes the innate immune response against bacterial pathogens. tmpzr1t_l9r_go_relaxed.owl LPS receptor complex Note that this term should not be used to refer to CD14 alone, but the multiprotein receptor complex that it is part of. cellular_component owl:Class GO:0062228 biolink:NamedThing negative regulation of adult somatic muscle development Any process that decreases the rate, frequency or extent of adult somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:34:38Z biological_process owl:Class GO:0007527 biolink:NamedThing adult somatic muscle development The process whose specific outcome is the progression of the adult somatic muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033163 biolink:NamedThing microneme membrane The lipid bilayer surrounding a microneme. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006402 biolink:NamedThing mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. tmpzr1t_l9r_go_relaxed.owl mRNA breakdown|mRNA catabolism|mRNA degradation|mRNA decay biological_process owl:Class GO:2000084 biolink:NamedThing regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis Any process that modulates the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of mesonephric mesenchyme to epithelial transition dph 2010-09-03T06:06:41Z biological_process owl:Class GO:0061261 biolink:NamedThing mesenchymal to epithelial transition involved in mesonephros morphogenesis A transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mesonephric mesenchyme to epithelial transition dph 2010-08-30T02:35:15Z biological_process owl:Class GO:1990625 biolink:NamedThing negative regulation of cytoplasmic translational initiation in response to stress Any process that stops, prevents or reduces the rate of cytoplasmic translation initiation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-31T21:25:56Z biological_process owl:Class GO:0060934 biolink:NamedThing His-Purkinje system cell fate commitment The commitment of cells to His-Purkinje cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:17:00Z biological_process owl:Class GO:0060932 biolink:NamedThing His-Purkinje system cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers regulate cardiac muscle contraction in the ventricles. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:10:32Z biological_process owl:Class GO:0035898 biolink:NamedThing parathyroid hormone secretion The regulated release of parathyroid hormone into the circulatory system. tmpzr1t_l9r_go_relaxed.owl PTH secretion|parathormone secretion|parathyrin secretion bf 2011-06-22T09:28:54Z biological_process owl:Class GO:0005836 biolink:NamedThing fatty-acyl-CoA synthase complex A protein complex that possesses fatty-acyl-CoA synthase activity. tmpzr1t_l9r_go_relaxed.owl fatty acyl CoA synthase complex Note that fatty acid synthetases of vertebrates and yeast are stable enzyme complexes of multifunctional polypeptide chains, whereas the fatty acid synthetases of plants and E. coli consist of non-associated individual enzymes. cellular_component owl:Class GO:0045254 biolink:NamedThing pyruvate dehydrogenase complex Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). tmpzr1t_l9r_go_relaxed.owl dihydrolipoyl dehydrogenase complex|pyruvate dehydrogenase complex (lipoamide) Wikipedia:Pyruvate_dehydrogenase_complex Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The functions of this complex are represented by the molecular function terms 'pyruvate dehydrogenase (lipoamide) activity ; GO:0004739', 'dihydrolipoamide S-acetyltransferase activity ; GO:0004742', and 'dihydrolipoamide dehydrogenase activity ; GO:0004148'. GO:0009364 cellular_component owl:Class GO:0032083 biolink:NamedThing negative regulation of type IV site-specific deoxyribonuclease activity Any process that stops or reduces the rate of type IV restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl type IV restriction enzyme inhibitor|type IV restriction endodeoxyribonuclease inhibitor|negative regulation of type IV restriction endodeoxyribonuclease activity|downregulation of type IV restriction endodeoxyribonuclease activity|inhibition of type IV restriction endodeoxyribonuclease activity|down-regulation of type IV restriction endodeoxyribonuclease activity|down regulation of type IV restriction endodeoxyribonuclease activity biological_process owl:Class GO:0032067 biolink:NamedThing type IV site-specific deoxyribonuclease activity Catalysis of the endonucleolytic cleavage of DNA in a site specific manner. Cleavage is dependent on the presence of a specific recognition site in the DNA which must be modified (e.g. methylated, hydroxymethylated, glucosyl-hydroxymethylated). tmpzr1t_l9r_go_relaxed.owl type IV restriction enzyme activity molecular_function owl:Class GO:0140239 biolink:NamedThing postsynaptic endocytosis A vesicle-mediated transport process in which the postsynapse take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/230 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T07:38:27Z biological_process owl:Class GO:1901472 biolink:NamedThing regulation of Golgi calcium ion export Any process that modulates the frequency, rate or extent of Golgi calcium ion export. tmpzr1t_l9r_go_relaxed.owl al 2012-10-03T07:26:03Z biological_process owl:Class GO:0061454 biolink:NamedThing release of sequestered calcium ion into cytosol by Golgi The directed movement of calcium ions (Ca2+) out of the Golgi apparatus into the cytosol. tmpzr1t_l9r_go_relaxed.owl Golgi calcium ion export dph 2012-07-27T02:29:43Z biological_process owl:Class GO:0042704 biolink:NamedThing uterine wall breakdown The sloughing of the endometrium and blood vessels during menstruation that results from a drop in progesterone levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042703 biolink:NamedThing menstruation The cyclic, physiologic discharge through the vagina of blood and endometrial tissues from the nonpregnant uterus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Menstruation Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1900215 biolink:NamedThing negative regulation of apoptotic process involved in metanephric collecting duct development Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development. tmpzr1t_l9r_go_relaxed.owl downregulation of apoptotic process of metanephric collecting duct development|negative regulation of apoptotic program of metanephric collecting duct development|downregulation of apoptotic process involved in metanephric collecting duct development|down-regulation of type I programmed cell death of metanephric collecting duct development|down regulation of programmed cell death by apoptosis of metanephric collecting duct development|downregulation of signaling (initiator) caspase activity of metanephric collecting duct development|inhibition of apoptotic programmed cell death of metanephric collecting duct development|down regulation of apoptotic process involved in metanephric collecting duct development|inhibition of apoptotic cell death of metanephric collecting duct development|inhibition of apoptotic process involved in metanephric collecting duct development|downregulation of type I programmed cell death of metanephric collecting duct development|inhibition of apoptosis of metanephric collecting duct development|negative regulation of apoptotic cell death of metanephric collecting duct development|down regulation of apoptotic process of metanephric collecting duct development|inhibition of signaling (initiator) caspase activity of metanephric collecting duct development|negative regulation of apoptotic process of metanephric collecting duct development|down regulation of apoptotic program of metanephric collecting duct development|negative regulation of signaling (initiator) caspase activity of metanephric collecting duct development|downregulation of apoptotic programmed cell death of metanephric collecting duct development|down-regulation of apoptotic program of metanephric collecting duct development|inhibition of programmed cell death by apoptosis of metanephric collecting duct development|negative regulation of programmed cell death by apoptosis of metanephric collecting duct development|downregulation of programmed cell death by apoptosis of metanephric collecting duct development|down regulation of apoptotic programmed cell death of metanephric collecting duct development|down-regulation of apoptosis of metanephric collecting duct development|down regulation of apoptosis of metanephric collecting duct development|negative regulation of apoptosis of metanephric collecting duct development|down-regulation of signaling (initiator) caspase activity of metanephric collecting duct development|down regulation of type I programmed cell death of metanephric collecting duct development|inhibition of apoptotic program of metanephric collecting duct development|down regulation of apoptotic cell death of metanephric collecting duct development|down-regulation of apoptotic cell death of metanephric collecting duct development|downregulation of apoptotic program of metanephric collecting duct development|down-regulation of apoptotic process of metanephric collecting duct development|downregulation of apoptotic cell death of metanephric collecting duct development|down-regulation of apoptotic process involved in metanephric collecting duct development|negative regulation of type I programmed cell death of metanephric collecting duct development|inhibition of type I programmed cell death of metanephric collecting duct development|down-regulation of programmed cell death by apoptosis of metanephric collecting duct development|negative regulation of apoptotic programmed cell death of metanephric collecting duct development|down regulation of signaling (initiator) caspase activity of metanephric collecting duct development|downregulation of apoptosis of metanephric collecting duct development|inhibition of apoptotic process of metanephric collecting duct development|down-regulation of apoptotic programmed cell death of metanephric collecting duct development yaf 2012-03-22T10:53:31Z biological_process owl:Class GO:1900204 biolink:NamedThing apoptotic process involved in metanephric collecting duct development Any apoptotic process that is involved in metanephric collecting duct development. tmpzr1t_l9r_go_relaxed.owl apoptotic program of metanephric collecting duct development|signaling (initiator) caspase activity of metanephric collecting duct development|type I programmed cell death of metanephric collecting duct development|apoptotic process of metanephric collecting duct development|apoptotic cell death of metanephric collecting duct development|apoptotic programmed cell death of metanephric collecting duct development|programmed cell death by apoptosis of metanephric collecting duct development|apoptosis of metanephric collecting duct development yaf 2012-03-21T01:21:32Z biological_process owl:Class GO:0002339 biolink:NamedThing B cell selection The process dependent upon B cell antigen receptor signaling in response to self or foreign antigen through which B cells are selected for survival. tmpzr1t_l9r_go_relaxed.owl B lymphocyte selection|B-lymphocyte selection|B-cell selection biological_process owl:Class GO:0030183 biolink:NamedThing B cell differentiation The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl B lymphocyte differentiation|B-lymphocyte differentiation|B-cell differentiation|B cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. GO:0042115 biological_process owl:Class GO:1902404 biolink:NamedThing mitotic actomyosin contractile ring contraction Any actomyosin contractile ring contraction that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|mitotic actomyosin contractile ring constriction|cytokinesis, actomyosin ring contraction involved in mitotic cell cycle https://github.com/geneontology/go-ontology/issues/21855 jl 2013-09-12T12:27:57Z biological_process owl:Class GO:1903369 biolink:NamedThing negative regulation of foraging behavior Any process that stops, prevents or reduces the frequency, rate or extent of foraging behavior. tmpzr1t_l9r_go_relaxed.owl down regulation of foraging behavior|inhibition of foraging behavior|downregulation of foraging behavior|down-regulation of foraging behavior mr 2014-08-22T03:03:12Z biological_process owl:Class GO:0005890 biolink:NamedThing sodium:potassium-exchanging ATPase complex Sodium:potassium-exchanging ATPases are tetrameric proteins, consisting of two large alpha subunits and two smaller beta subunits. The alpha subunits bear the active site and penetrate the membrane, while the beta subunits carry oligosaccharide groups and face the cell exterior. tmpzr1t_l9r_go_relaxed.owl sodium/potassium-exchanging ATPase complex|sodium pump cellular_component owl:Class GO:0040008 biolink:NamedThing regulation of growth Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006390 biolink:NamedThing mitochondrial transcription The synthesis of RNA from a mitochondrial DNA template, usually by a specific mitochondrial RNA polymerase. tmpzr1t_l9r_go_relaxed.owl transcription from mitochondrial promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0036484 biolink:NamedThing trunk neural crest cell migration The characteristic movement of trunk neural crest cells from the neural tube to other locations in the vertebrate embryo. tmpzr1t_l9r_go_relaxed.owl trunk NCC migration bf 2014-08-26T15:27:44Z biological_process owl:Class GO:0035290 biolink:NamedThing trunk segmentation Partitioning of the blastoderm embryo into trunk segmental units. In Drosophila, the trunk segments include thoracic segments and abdominal segments A1 to A8. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004946 biolink:NamedThing bombesin receptor activity Combining with bombesin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031989 biolink:NamedThing bombesin receptor signaling pathway The series of molecular signals generated as a consequence of a bombesin receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl bombesin receptor signalling pathway biological_process owl:Class GO:0005980 biolink:NamedThing glycogen catabolic process The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. tmpzr1t_l9r_go_relaxed.owl glycogen catabolism|glycogenolysis|glycogen degradation|glycogen breakdown MetaCyc:GLYCOCAT-PWY biological_process owl:Class GO:1902669 biolink:NamedThing positive regulation of axon guidance Any process that activates or increases the frequency, rate or extent of axon guidance. tmpzr1t_l9r_go_relaxed.owl upregulation of axon chemotaxis|activation of axon growth cone guidance|up-regulation of axon guidance|positive regulation of axon growth cone guidance|activation of axon guidance|activation of axon pathfinding|up-regulation of axon chemotaxis|up regulation of axon guidance|positive regulation of axon chemotaxis|up regulation of axon chemotaxis|up-regulation of axon pathfinding|upregulation of axon guidance|upregulation of axon growth cone guidance|positive regulation of axon pathfinding|up-regulation of axon growth cone guidance|up regulation of axon growth cone guidance|activation of axon chemotaxis|upregulation of axon pathfinding|up regulation of axon pathfinding hjd 2014-01-31T18:50:29Z biological_process owl:Class GO:0120101 biolink:NamedThing bacterial-type flagellum stator complex A hetero-hexameric complex of 2 membrane proteins, A and B, with stoichiometry A4B2. The A and B proteins form a channel through which flow the ions that power the bacterial-type flagellum. They form the stator, or nonrotating portion, of the flagellum motor with the B protein apparently attached to the peptidoglycan cell wall. Examples include the H+ driven MotA-MotB stator complex of Escherichia coli and Salmonella enterica, and the Na+ driven PomA-PomB stator complex of Vibrio and Shewanella species. tmpzr1t_l9r_go_relaxed.owl bacterial-type flagellum torque generator complex|bacterial-type flagellum motor force generator complex krc 2017-10-03T16:06:16Z cellular_component owl:Class GO:0120100 biolink:NamedThing bacterial-type flagellum motor A transmembrane complex embedded in the cytoplasmic membrane which is the motor force, or torque, generator of the bacterial-type flagellum. The motor consists of a membrane-anchored rotor complex surrounded by one or more stator complexes in the cytoplasmic membrane. The stator consists of a hetero-hexameric complex of 2 membrane proteins, A and B, with stoichiometry A4B2. Examples are the H+ driven MotA-MotB stator complex of Escherichia coli and Salmonella enterica, and the Na+ driven PomA-PomB stator complex of Vibrio and Shewanella species. The rotor complex consists of a membrane-anchored ring and the motor switch complex, which controls the direction of flagellar rotation. tmpzr1t_l9r_go_relaxed.owl krc 2017-10-03T15:44:35Z cellular_component owl:Class GO:0072378 biolink:NamedThing blood coagulation, fibrin clot formation A protein activation cascade that contributes to blood coagulation and consists of the cascade of enzymatic reactions initiated by physical damage to the wall of a blood vessel, leading to the formation of a formation of a fibrin clot at the site of the injury. The process also includes numerous positive and negative regulatory events. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'blood coagulation, intrinsic pathway ; GO:0007597'. mah 2010-11-22T03:09:32Z biological_process owl:Class GO:1902041 biolink:NamedThing regulation of extrinsic apoptotic signaling pathway via death domain receptors Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors. tmpzr1t_l9r_go_relaxed.owl regulation of death receptor-mediated apoptosis lb 2013-04-03T07:16:59Z biological_process owl:Class GO:0006142 biolink:NamedThing regulation of pyrimidine nucleobase metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving pyrimidine nucleobases. tmpzr1t_l9r_go_relaxed.owl regulation of pyrimidine base metabolic process|regulation of pyrimidine base metabolism biological_process owl:Class GO:0098909 biolink:NamedThing regulation of cardiac muscle cell action potential involved in regulation of contraction Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell contributing to the regulation of its contraction. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T07:45:11Z biological_process owl:Class GO:0038021 biolink:NamedThing leptin receptor activity Combining with the fat-cell specific hormone leptin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-27T01:36:45Z molecular_function owl:Class GO:0033210 biolink:NamedThing leptin-mediated signaling pathway A series of molecular signals initiated by the binding of leptin to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Leptin is a hormone manufactured primarily in the adipocytes of white adipose tissue, and the level of circulating leptin is directly proportional to the total amount of fat in the body. tmpzr1t_l9r_go_relaxed.owl leptin-mediated signalling pathway|adipocytokine signaling pathway biological_process owl:Class GO:0033630 biolink:NamedThing positive regulation of cell adhesion mediated by integrin Any process that activates or increases the frequency, rate, or extent of cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell adhesion mediated by integrin complex biological_process owl:Class GO:0070947 biolink:NamedThing neutrophil-mediated killing of fungus The directed killing of a fungal cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated killing of fungus mah 2009-10-01T02:07:44Z biological_process owl:Class GO:0036363 biolink:NamedThing transforming growth factor beta activation The release of transforming growth factor beta (TGF-beta) from its latent state. TGF-beta is secreted as part of a large latent complex (LLC) that is targeted to the extracellular matrix. Release of TGFbeta from its latent state is required for TGFbeta to bind to its receptors, and can occur by a variety of mechanisms. tmpzr1t_l9r_go_relaxed.owl L-TGF-beta activation|TGF-beta activation|TGFbeta activation|latent TGF-beta activation|TGF-B activation|TGFB activation bf 2012-09-24T10:06:56Z biological_process owl:Class GO:0051132 biolink:NamedThing NK T cell activation The change in morphology and behavior of a mature or immature natural killer T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl NT cell activation|natural T cell activation|NKT cell activation|natural killer T cell activation|NK T lymphocyte activation|NK T-lymphocyte activation|NK T-cell activation Note that NK T cells are a distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repetoire of variable region gene segments. biological_process owl:Class GO:1903455 biolink:NamedThing negative regulation of androst-4-ene-3,17-dione biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of androst-4-ene-3,17-dione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of androst-4-ene-3,17-dione formation|down regulation of androst-4-ene-3,17-dione synthesis|downregulation of androst-4-ene-3,17-dione biosynthesis|inhibition of androst-4-ene-3,17-dione biosynthetic process|downregulation of androst-4-ene-3,17-dione synthesis|inhibition of androst-4-ene-3,17-dione formation|negative regulation of androst-4-ene-3,17-dione anabolism|inhibition of androst-4-ene-3,17-dione anabolism|down-regulation of androst-4-ene-3,17-dione synthesis|negative regulation of androst-4-ene-3,17-dione biosynthesis|down-regulation of androst-4-ene-3,17-dione biosynthetic process|inhibition of androst-4-ene-3,17-dione biosynthesis|downregulation of androstenedione biosynthetic process|negative regulation of androst-4-ene-3,17-dione synthesis|downregulation of androst-4-ene-3,17-dione formation|down-regulation of androstenedione biosynthetic process|down regulation of androst-4-ene-3,17-dione biosynthetic process|inhibition of androst-4-ene-3,17-dione synthesis|inhibition of androstenedione|downregulation of androst-4-ene-3,17-dione biosynthetic process|down-regulation of androst-4-ene-3,17-dione biosynthesis|down regulation of androst-4-ene-3,17-dione anabolism|down regulation of androstenedione biosynthetic process|down regulation of androst-4-ene-3,17-dione biosynthesis|down-regulation of androst-4-ene-3,17-dione anabolism|down-regulation of androst-4-ene-3,17-dione formation|negative regulation of androstenedione biosynthetic process|downregulation of androst-4-ene-3,17-dione anabolism|down regulation of androst-4-ene-3,17-dione formation mr 2014-09-22T14:36:59Z biological_process owl:Class GO:1903449 biolink:NamedThing androst-4-ene-3,17-dione biosynthetic process The chemical reactions and pathways resulting in the formation of androst-4-ene-3,17-dione. tmpzr1t_l9r_go_relaxed.owl androstenedione biosynthetic process|androst-4-ene-3,17-dione anabolism|androst-4-ene-3,17-dione synthesis|androst-4-ene-3,17-dione biosynthesis|androst-4-ene-3,17-dione formation mr 2014-09-19T20:18:19Z biological_process owl:Class GO:0061575 biolink:NamedThing cyclin-dependent protein serine/threonine kinase activator activity Binds to and increases the activity of a cyclin-dependent protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase 5 activator activity dph 2013-10-08T13:50:35Z GO:0016534|GO:0016535 molecular_function owl:Class GO:0072145 biolink:NamedThing proximal convoluted tubule segment 1 cell development The process whose specific outcome is the progression of an S1 cell in the kidney over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl S1 cell development mah 2010-02-24T01:54:56Z biological_process owl:Class GO:0072062 biolink:NamedThing proximal convoluted tubule segment 1 cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the S1 cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl S1 cell differentiation mah 2010-01-25T04:11:17Z biological_process owl:Class GO:0043308 biolink:NamedThing eosinophil degranulation The regulated exocytosis of secretory granules containing preformed mediators such as major basic protein, eosinophil peroxidase, and eosinophil cationic protein by an eosinophil. tmpzr1t_l9r_go_relaxed.owl eosinophil granule exocytosis biological_process owl:Class GO:0002447 biolink:NamedThing eosinophil mediated immunity Any process involved in the carrying out of an immune response by an eosinophil. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002303 biolink:NamedThing gamma-delta T cell differentiation involved in immune response The process in which an antigenically naive gamma-delta T cell acquires the specialized features of an effector, regulatory, or memory T cell and contributes to an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells. tmpzr1t_l9r_go_relaxed.owl gamma-delta T lymphocyte differentiation during immune response|gamma-delta T-lymphocyte differentiation during immune response|gamma-delta T cell development involved in immune response|gamma-delta T cell differentiation during immune response|gamma-delta T-cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0017080 biolink:NamedThing sodium channel regulator activity Binds to and modulates the activity of a sodium channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052928 biolink:NamedThing CTP:3'-cytidine-tRNA cytidylyltransferase activity Catalysis of the reaction: a tRNA with a 3' cytidine + CTP = a tRNA with a 3' CC end + diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.72|KEGG_REACTION:R09384 molecular_function owl:Class GO:0042896 biolink:NamedThing chloramphenicol transmembrane transporter activity Enables the transfer of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl chloramphenicol transporter activity molecular_function owl:Class GO:0042892 biolink:NamedThing chloramphenicol transmembrane transport The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl chloramphenicol transport biological_process owl:Class GO:1900450 biolink:NamedThing negative regulation of glutamate receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of glutamate receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of glutamate signalling pathway|down regulation of glutamate signalling pathway|down-regulation of glutamate receptor signaling pathway|down regulation of glutamate receptor signaling pathway|downregulation of glutamate receptor signaling pathway|down regulation of glutamate signaling pathway|downregulation of glutamate signaling pathway|inhibition of glutamate signaling pathway|inhibition of glutamate receptor signaling pathway|down-regulation of glutamate signalling pathway|negative regulation of glutamate signaling pathway|down-regulation of glutamate signaling pathway|negative regulation of glutamate signalling pathway|inhibition of glutamate signalling pathway rl 2012-04-27T03:45:53Z biological_process owl:Class GO:0007215 biolink:NamedThing glutamate receptor signaling pathway A series of molecular signals initiated by the binding of glutamate to a glutamate receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl glutamate signalling pathway|glutamate signaling pathway biological_process owl:Class GO:1902462 biolink:NamedThing positive regulation of mesenchymal stem cell proliferation Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl activation of mesenchymal stem cell proliferation|up-regulation of MSC proliferation|positive regulation of MSC proliferation|activation of MSC proliferation|upregulation of MSC proliferation|up regulation of MSC proliferation|upregulation of mesenchymal stem cell proliferation|up-regulation of mesenchymal stem cell proliferation|up regulation of mesenchymal stem cell proliferation pm 2013-10-22T10:01:17Z biological_process owl:Class GO:0035023 biolink:NamedThing regulation of Rho protein signal transduction Any process that modulates the frequency, rate or extent of Rho protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036473 biolink:NamedThing cell death in response to oxidative stress Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to an oxidative stress stimulus. tmpzr1t_l9r_go_relaxed.owl This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred in response to an oxidative stress stimulus, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death', GO:0006915 'apoptotic process' or GO:0097468 'programmed cell death in response to reactive oxygen species'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term. bf 2014-07-21T11:37:03Z biological_process owl:Class GO:0051248 biolink:NamedThing negative regulation of protein metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving a protein. tmpzr1t_l9r_go_relaxed.owl downregulation of protein metabolic process|negative regulation of protein metabolism|down regulation of protein metabolic process|down-regulation of protein metabolic process|inhibition of protein metabolic process biological_process owl:Class GO:0060140 biolink:NamedThing modulation by virus of syncytium formation via plasma membrane fusion The formation in a cell that has been targeted by a virus of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006948 biolink:NamedThing induction by virus of host cell-cell fusion The process of syncytia-forming cell-cell fusion, caused by a virus. tmpzr1t_l9r_go_relaxed.owl viral-induced host cell-cell fusion|induction by virus of cell-cell fusion in host|viral-induced membrane fusion|viral-induced cell-cell fusion Where syncytium formation results in the spread of virus in the host, also consider annotating to the term 'spread of virus in multicellular host ; GO:0046739'. biological_process owl:Class GO:0072495 biolink:NamedThing host cell Cajal body A class of nuclear body in the eukaryotic host cell, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA. The host is the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host cell coiled body|coiled body of host mah 2010-12-15T11:51:12Z cellular_component owl:Class GO:0044095 biolink:NamedThing host cell nucleoplasm That part of a host cell's nuclear content other than the chromosomes or the nucleolus. The host is the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl jl 2009-04-22T02:02:51Z cellular_component owl:Class GO:0007620 biolink:NamedThing copulation The act of sexual union between male and female, involving the transfer of sperm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009757 biolink:NamedThing hexose mediated signaling A series of molecular signals mediated by the detection of hexose. tmpzr1t_l9r_go_relaxed.owl hexose mediated signalling biological_process owl:Class GO:0071331 biolink:NamedThing cellular response to hexose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:37:00Z biological_process owl:Class GO:0016907 biolink:NamedThing G protein-coupled acetylcholine receptor activity Combining with acetylcholine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled acetylcholine receptor activity|muscarinic acetylcholine receptor activity|acetylcholine receptor activity, G-protein coupled|metabotropic acetylcholine receptor activity|G protein coupled acetylcholine receptor activity GO:0004981 molecular_function owl:Class GO:0007213 biolink:NamedThing G protein-coupled acetylcholine receptor signaling pathway Any series of molecular signals initiated by an acetylcholine receptor on the surface of the target cell binding to one of its physiological ligands, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl acetylcholine receptor signalling, muscarinic pathway|G-protein coupled acetylcholine receptor signaling pathway|muscarinic acetylcholine receptor signaling pathway biological_process owl:Class GO:0010090 biolink:NamedThing trichome morphogenesis The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl trichome cell morphogenesis during differentiation GO:0048272 biological_process owl:Class GO:1901683 biolink:NamedThing arsenate ion transmembrane transporter activity Enables the transfer of an arsenate ion from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-04T23:26:27Z molecular_function owl:Class GO:1901684 biolink:NamedThing arsenate ion transmembrane transport The process in which arsenate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl Note that this term is not intended for use in annotating lateral movement within membranes. tb 2012-12-04T23:26:36Z biological_process owl:Class GO:0002634 biolink:NamedThing regulation of germinal center formation Any process that modulates the frequency, rate, or extent of germinal center formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002467 biolink:NamedThing germinal center formation The process in which germinal centers form. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001942 biolink:NamedThing hair follicle development The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open. tmpzr1t_l9r_go_relaxed.owl GO:0001943 biological_process owl:Class GO:0060029 biolink:NamedThing convergent extension involved in organogenesis The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contribution to the shaping of an organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000275 biolink:NamedThing mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled. tmpzr1t_l9r_go_relaxed.owl proton-transporting ATP synthase complex, catalytic core F(1)|hydrogen-transporting ATP synthase, F1 sector See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'. cellular_component owl:Class GO:2001185 biolink:NamedThing regulation of CD8-positive, alpha-beta T cell activation Any process that modulates the frequency, rate or extent of CD8-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-03T01:16:51Z biological_process owl:Class GO:0036037 biolink:NamedThing CD8-positive, alpha-beta T cell activation The change in morphology and behavior of a CD8-positive, alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl bf 2011-11-03T10:34:12Z biological_process owl:Class GO:2000640 biolink:NamedThing positive regulation of SREBP signaling pathway Any process that activates or increases the frequency, rate or extent of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of SREBP-mediated signalling pathway|positive regulation of SREBP-mediated signaling pathway vk 2011-04-20T02:46:05Z biological_process owl:Class GO:0032933 biolink:NamedThing SREBP signaling pathway A series of molecular signals from the endoplasmic reticulum to the nucleus generated as a consequence of decreased levels of one or more sterols (and in some yeast, changes in oxygen levels) and which proceeds through activation of a sterol response element binding transcription factor (SREBP) to result in up-regulation of target gene transcription. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-nuclear sterol response pathway|sterol depletion response, SREBP target gene transcriptional activation|stimulation of sterol regulatory element binding protein target gene transcription|SREBP-mediated signaling pathway|sterol regulatory element binding protein target gene transcriptional activation|endoplasmic reticulum to nucleus sterol response pathway|up regulation of sterol regulatory element binding protein target gene transcription|SREBP signalling|sterol response element binding protein signaling pathway|positive regulation of sterol regulatory element binding protein target gene transcription involved in sterol depletion response|SREBP target gene transcriptional activation|upregulation of sterol regulatory element binding protein target gene transcription|SREBP-mediated signalling pathway|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway|activation of sterol regulatory element binding protein target gene transcription|ER-nuclear sterol response pathway|up-regulation of sterol regulatory element binding protein target gene transcription|positive regulation of transcription via sterol regulatory element binding|ER to nucleus sterol response pathway|positive regulation of sterol regulatory element binding protein target gene transcription GO:0006994|GO:0035104|GO:0030967 biological_process owl:Class GO:1903891 biolink:NamedThing regulation of ATF6-mediated unfolded protein response Any process that modulates the frequency, rate or extent of the ATF6-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl regulation of UPR signaling by ATF6 stress sensor|regulation of activating transcription factor 6 signaling in unfolded protein response|regulation of ATF6 signal transduction pathway|regulation of ATF6 signaling in response to endoplasmic reticulum stress|regulation of ATF6-alpha UPR branch|regulation of ATF6 branch of UPR|regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|regulation of ATF6-beta UPR branch bf 2015-02-09T10:17:15Z biological_process owl:Class GO:1905410 biolink:NamedThing regulation of mitotic cohesin unloading Any process that modulates the frequency, rate or extent of mitotic cohesin unloading. tmpzr1t_l9r_go_relaxed.owl vw 2016-08-25T15:45:22Z biological_process owl:Class GO:0061781 biolink:NamedThing mitotic cohesin unloading Negative regulation of sister chromatid cohesion by the topological unlinking of a cohesin ring to DNA as part of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl dph 2016-08-24T09:43:07Z biological_process owl:Class GO:1902608 biolink:NamedThing positive regulation of large conductance calcium-activated potassium channel activity Any process that activates or increases the frequency, rate or extent of large conductance calcium-activated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl activation of large conductance KCa channels|up regulation of BK calcium-activated potassium channel activity|upregulation of BK channel activity|upregulation of large conductance calcium-activated potassium channel activity|upregulation of large conductance KCa channels|positive regulation of BK calcium-activated potassium channel activity|positive regulation of large conductance KCa channels|up regulation of large conductance KCa channels|activation of large conductance calcium-activated potassium channel activity|upregulation of BK KCa channels|positive regulation of BK KCa channels|up-regulation of large conductance KCa channels|activation of BK calcium-activated potassium channel activity|up regulation of large conductance calcium-activated potassium channel activity|up-regulation of BK KCa channels|positive regulation of BK channel activity|up-regulation of large conductance calcium-activated potassium channel activity|up-regulation of BK calcium-activated potassium channel activity|up regulation of BK KCa channels|up regulation of BK channel activity|activation of BK channel activity|up-regulation of BK channel activity|upregulation of BK calcium-activated potassium channel activity|activation of BK KCa channels sl 2014-01-02T18:51:21Z biological_process owl:Class GO:1905393 biolink:NamedThing plant organ formation The process that gives rise to the plant organ. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T00:21:27Z biological_process owl:Class GO:0014804 biolink:NamedThing terminal cisterna lumen The region between the inner and outer lipid bilayers of the terminal cisterna envelope. This space is enriched in calsequestrin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030794 biolink:NamedThing (S)-coclaurine-N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (S)-coclaurine = S-adenosyl-L-homocysteine + (S)-N-methylcoclaurine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(S)-coclaurine-N-methyltransferase activity MetaCyc:2.1.1.140-RXN|EC:2.1.1.140|RHEA:17409 molecular_function owl:Class GO:0007055 biolink:NamedThing spindle assembly involved in male meiosis II The formation of the spindle during meiosis II of a meiotic cell cycle in males. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male meiosis II spindle assembly biological_process owl:Class GO:0046824 biolink:NamedThing positive regulation of nucleocytoplasmic transport Any process that activates or increases the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm. tmpzr1t_l9r_go_relaxed.owl activation of nucleocytoplasmic transport|stimulation of nucleocytoplasmic transport|upregulation of nucleocytoplasmic transport|up regulation of nucleocytoplasmic transport|up-regulation of nucleocytoplasmic transport biological_process owl:Class GO:0034878 biolink:NamedThing 2-hydroxyisonicotinate dehydrogenase activity Catalysis of the reaction: 2-hydroxyisonicotinate + acceptor + H2O = citrazinate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1338 molecular_function owl:Class GO:0003249 biolink:NamedThing cell proliferation involved in heart valve morphogenesis The multiplication or reproduction of cells that contributes to the shaping of a heart valve. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T01:59:19Z biological_process owl:Class GO:2000793 biolink:NamedThing cell proliferation involved in heart valve development Any cell proliferation that is involved in heart valve development. tmpzr1t_l9r_go_relaxed.owl cell proliferation of heart valve development|cell proliferation of cardiac valve development bf 2011-06-24T03:12:15Z biological_process owl:Class GO:0070458 biolink:NamedThing cellular detoxification of nitrogen compound Any cellular process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances. tmpzr1t_l9r_go_relaxed.owl cellular detoxification of nitrogenous compound biological_process owl:Class GO:0014005 biolink:NamedThing microglia development The process aimed at the progression of a microglial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl microglial cell development biological_process owl:Class GO:0106222 biolink:NamedThing long noncoding RNA binding Binding to a long noncoding RNA (lncRNA). tmpzr1t_l9r_go_relaxed.owl lncRNA binding hjd 2019-08-27T14:52:58Z molecular_function owl:Class GO:1990929 biolink:NamedThing sulfoquinovosidase activity Catalyzes the hydrolysis of terminal non-reducing alpha-sulfoquinovoside residues in alpha-sulfoquinovosyl diacylglycerides and alpha-sulfoquinovosyl glycerol, generating alpha-sulfoquinovose. tmpzr1t_l9r_go_relaxed.owl tb 2016-02-19T01:18:37Z molecular_function owl:Class GO:2000061 biolink:NamedThing regulation of ureter smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of ureter smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T01:44:16Z biological_process owl:Class GO:0008631 biolink:NamedThing intrinsic apoptotic signaling pathway in response to oxidative stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl oxidative stress-induced intrinsic apoptotic signaling pathway|induction of apoptosis by oxidative stress biological_process owl:Class GO:0016345 biolink:NamedThing female meiotic chromosome movement towards spindle pole The directed movement of chromosomes in the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during female meiosis. tmpzr1t_l9r_go_relaxed.owl female meiotic chromosome movement to spindle pole|female meiotic chromosome movement|chromosome movement towards spindle pole during female meiosis biological_process owl:Class GO:0032087 biolink:NamedThing regulation of type IV site-specific deoxyribonuclease activity Any process that modulates the frequency, rate or extent of a type IV restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl regulation of type IV restriction endodeoxyribonuclease activity|type IV restriction endodeoxyribonuclease regulator|type IV restriction enzyme regulator biological_process owl:Class GO:0036002 biolink:NamedThing pre-mRNA binding Binding to a pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule. tmpzr1t_l9r_go_relaxed.owl protein-coding primary transcript binding bf 2011-09-16T10:23:37Z molecular_function owl:Class GO:0106349 biolink:NamedThing snRNA methylation The posttranscriptional addition of methyl groups to specific residues in an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl hjd 2020-12-18T15:55:19Z biological_process owl:Class GO:0051039 biolink:NamedThing positive regulation of transcription involved in meiotic cell cycle Any process that activates or increases the frequency, rate or extent of transcription as part of a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of meiotic transcription|up-regulation of transcription during meiosis|stimulation of transcription during meiosis|up regulation of transcription during meiosis|positive regulation of transcription, meiotic|activation of transcription during meiosis|upregulation of transcription during meiosis biological_process owl:Class GO:1901109 biolink:NamedThing granaticin biosynthetic process The chemical reactions and pathways resulting in the formation of granaticin. tmpzr1t_l9r_go_relaxed.owl granaticin synthesis|granaticin formation|granaticin anabolism|granaticin biosynthesis yaf 2012-07-11T02:51:40Z biological_process owl:Class GO:1901107 biolink:NamedThing granaticin metabolic process The chemical reactions and pathways involving granaticin. tmpzr1t_l9r_go_relaxed.owl granaticin metabolism yaf 2012-07-11T02:51:08Z biological_process owl:Class GO:0097237 biolink:NamedThing cellular response to toxic substance Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-02T12:23:31Z biological_process owl:Class GO:0018122 biolink:NamedThing peptidyl-asparagine ADP-ribosylation The transfer, from NAD, of ADP-ribose to peptidyl-asparagine to form peptidyl-N4-(ADP-ribosyl)-L-asparagine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0231 biological_process owl:Class GO:0102563 biolink:NamedThing aurachin C monooxygenase activity Catalysis of the reaction: aurachin C + O2 + H+ + NAD(P)H <=> aurachin C epoxide + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15029 molecular_function owl:Class GO:0006589 biolink:NamedThing octopamine biosynthetic process The chemical reactions and pathways resulting in the formation of octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species. tmpzr1t_l9r_go_relaxed.owl octopamine synthesis|octopamine anabolism|octopamine formation|octopamine biosynthesis biological_process owl:Class GO:0046333 biolink:NamedThing octopamine metabolic process The chemical reactions and pathways involving octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species. tmpzr1t_l9r_go_relaxed.owl octopamine metabolism biological_process owl:Class GO:0032505 biolink:NamedThing reproduction of a single-celled organism The biological process in which new individuals are produced by one or two single-celled organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000003 biolink:NamedThing reproduction The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms. tmpzr1t_l9r_go_relaxed.owl reproductive physiological process Wikipedia:Reproduction GO:0019952|GO:0050876 biological_process owl:Class GO:0051163 biolink:NamedThing D-arabitol metabolic process The chemical reactions and pathways involving D-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. The D enantiomer is present in lichens and mushrooms. tmpzr1t_l9r_go_relaxed.owl D-arabitol metabolism biological_process owl:Class GO:0009067 biolink:NamedThing aspartate family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. tmpzr1t_l9r_go_relaxed.owl aspartate family amino acid biosynthesis|aspartate family amino acid anabolism|aspartate family amino acid formation|aspartate family amino acid synthesis biological_process owl:Class GO:0050682 biolink:NamedThing AF-2 domain binding Binding to an AF-2 protein domain, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047888 biolink:NamedThing fatty acid peroxidase activity Catalysis of the reaction: 2 H(2)O(2) + H(+) + palmitate = CO(2) + 3 H(2)O + pentadecanal. tmpzr1t_l9r_go_relaxed.owl long chain fatty acid peroxidase activity|fatty-acid peroxidase activity|hexadecanoate:hydrogen-peroxide oxidoreductase activity MetaCyc:FATTY-ACID-PEROXIDASE-RXN|KEGG_REACTION:R01703|RHEA:23960|EC:1.11.1.3 molecular_function owl:Class GO:0005134 biolink:NamedThing interleukin-2 receptor binding Binding to an interleukin-2 receptor. tmpzr1t_l9r_go_relaxed.owl IL-2|interleukin-2 receptor ligand molecular_function owl:Class GO:0035243 biolink:NamedThing protein-arginine omega-N symmetric methyltransferase activity Catalysis of the addition of a second methyl group to methylated peptidyl-arginine. Methylation is on the terminal nitrogen (omega nitrogen) residue that is not already methylated, resulting in symmetrical peptidyl-N(omega),N'(omega)-dimethyled arginine residues. tmpzr1t_l9r_go_relaxed.owl type II PRMT activity|S-adenosyl-L-methionine:[protein]-L-arginine N-methyltransferase ([protein]-Nomega,Nomega'-dimethyl-L-arginine-forming)|type II protein arginine methyltransferase activity RESID:AA0069|Reactome:R-HSA-6804383|EC:2.1.1.320|RESID:AA0067|RHEA:48108 Note that type II protein arginine N-methyltransferase enzymes possess 'protein-arginine omega-N monomethyltransferase activity ; GO:0035241' and 'protein-arginine omega-N symmetric methyltransferase activity ; GO:0035243'. molecular_function owl:Class GO:0016274 biolink:NamedThing protein-arginine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (protein)-arginine = S-adenosyl-L-homocysteine + (protein)-N-methyl-arginine. tmpzr1t_l9r_go_relaxed.owl PRMT activity Reactome:R-HSA-5205798|Reactome:R-HSA-8934735|Reactome:R-HSA-5218952|Reactome:R-HSA-5205822|Reactome:R-HSA-8879123|Reactome:R-HSA-5229203|Reactome:R-HSA-5205824|Reactome:R-HSA-5205820|Reactome:R-HSA-191790|Reactome:R-HSA-5229010|Reactome:R-HSA-5661126|Reactome:R-HSA-5205867 molecular_function owl:Class GO:0047380 biolink:NamedThing ADP-dependent medium-chain-acyl-CoA hydrolase activity Catalysis of the reaction: H2O + a medium-chain acyl-CoA = a medium-chain carboxylate + CoA. Requires ADP. tmpzr1t_l9r_go_relaxed.owl ADP-dependent medium-chain acyl-thioester hydrolase activity|ADP-dependent medium-chain acyl-CoA hydrolase activity|ADP-dependent myristoyl-CoA thioesterase activity|ADP-dependent-medium-chain-acyl-CoA hydrolase activity|ADP-dependent medium-chain acyl coenzyme A hydrolase activity|ADP-dependent medium-chain hydrolase activity MetaCyc:3.1.2.19-RXN|EC:3.1.2.19 molecular_function owl:Class GO:0052815 biolink:NamedThing medium-chain acyl-CoA hydrolase activity Catalysis of the reaction: H2O + a medium-chain acyl-CoA = a medium-chain carboxylate + CoA. A medium chain is a chain of between eight and twelve carbons in length. tmpzr1t_l9r_go_relaxed.owl medium-chain acyl-thioester hydrolase activity|medium-chain hydrolase activity|medium-chain-acyl-CoA hydrolase activity|medium-chain acyl coenzyme A hydrolase activity ai 2011-10-25T05:26:29Z molecular_function owl:Class GO:0009856 biolink:NamedThing pollination The cascade of biological processes occurring in plants beginning when the pollen lands on the female reproductive organs of a plant and continuing up to, but not including, fertilization, as defined by sperm-egg cell fusion. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pollination biological_process owl:Class GO:1905067 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in heart development Any process that stops, prevents or reduces the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development. tmpzr1t_l9r_go_relaxed.owl down regulation of canonical Wnt-activated signaling pathway involved in heart development|down regulation of canonical Wnt signaling pathway involved in heart development|down-regulation of canonical Wnt receptor signalling pathway involved in heart development|negative regulation of canonical Wnt-activated signaling pathway involved in heart development|down-regulation of canonical Wnt receptor signaling pathway involved in heart development|downregulation of canonical Wnt-activated signaling pathway involved in heart development|inhibition of canonical Wnt signaling pathway involved in heart development|negative regulation of canonical Wnt receptor signaling pathway involved in heart development|inhibition of canonical Wnt receptor signaling pathway involved in heart development|downregulation of canonical Wnt receptor signaling pathway involved in heart development|inhibition of canonical Wnt-activated signaling pathway involved in heart development|down regulation of canonical Wnt receptor signalling pathway involved in heart development|down-regulation of canonical Wnt-activated signaling pathway involved in heart development|down-regulation of canonical Wnt signaling pathway involved in heart development|downregulation of canonical Wnt signaling pathway involved in heart development|inhibition of canonical Wnt receptor signalling pathway involved in heart development|negative regulation of canonical Wnt receptor signalling pathway involved in heart development|downregulation of canonical Wnt receptor signalling pathway involved in heart development|down regulation of canonical Wnt receptor signaling pathway involved in heart development bc 2016-03-21T12:47:06Z biological_process owl:Class GO:1905066 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in heart development Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt-activated signaling pathway involved in heart development|regulation of canonical Wnt receptor signaling pathway involved in heart development|regulation of canonical Wnt receptor signalling pathway involved in heart development bc 2016-03-21T12:46:56Z biological_process owl:Class GO:0018234 biolink:NamedThing peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine The thioether cross-linking of a cysteine residue to a tyrosine residue to form 3'-(S-L-cysteinyl)-L-tyrosine, found in galactose oxidase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0113 biological_process owl:Class GO:0031073 biolink:NamedThing cholesterol 26-hydroxylase activity Catalysis of the hydroxylation of cholesterol at position 26 of the side chain, to produce 26-hydroxycholesterol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099547 biolink:NamedThing regulation of translation at synapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating translation occurring at the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0120229 biolink:NamedThing protein localization to motile cilium A process in which a protein is transported to, or maintained in, a location within a motile cilium. tmpzr1t_l9r_go_relaxed.owl protein localization to nonmotile primary cilium https://github.com/geneontology/go-ontology/issues/19588 krc 2020-06-05T23:43:04Z biological_process owl:Class GO:0014015 biolink:NamedThing positive regulation of gliogenesis Any process that activates or increases the frequency, rate or extent of gliogenesis, the formation of mature glia. tmpzr1t_l9r_go_relaxed.owl activation of gliogenesis|upregulation of gliogenesis|up-regulation of gliogenesis|stimulation of gliogenesis|up regulation of gliogenesis biological_process owl:Class GO:0014013 biolink:NamedThing regulation of gliogenesis Any process that modulates the frequency, rate or extent of gliogenesis, the formation of mature glia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000970 biolink:NamedThing tRNA exon ligation utilizing GTP as source of linkage phosphate A tRNA exon ligation process in which the splice junction phosphate is derived from exogenous GTP. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in the yeast Saccharomyces cerevisiae where the ligation reaction also produces a 2'-phosphate at the splice junction which is subsequently removed as part of the ligation process. tmpzr1t_l9r_go_relaxed.owl krc 2009-04-28T10:33:25Z biological_process owl:Class GO:0000968 biolink:NamedThing tRNA exon ligation An RNA exon ligation process that rejoins two exons of a pre-tRNA which has had the intron removed. tmpzr1t_l9r_go_relaxed.owl krc 2009-04-28T10:22:40Z biological_process owl:Class GO:0034882 biolink:NamedThing cis-aconitamide amidase activity Catalysis of the reaction: cis-aconitamide + H2O = cis-aconitate + HN3. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1344 molecular_function owl:Class GO:1901280 biolink:NamedThing D-ribose 5-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-ribose 5-phosphate synthesis|D-ribose 5-phosphate anabolism|D-ribose 5-phosphate biosynthesis|D-ribose 5-phosphate formation yaf 2012-08-17T15:00:27Z biological_process owl:Class GO:1900294 biolink:NamedThing regulation of heptasaccharide transport Any process that modulates the frequency, rate or extent of heptasaccharide transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:40:40Z biological_process owl:Class GO:0002152 biolink:NamedThing bile acid conjugation The process in which bile acids are covalently linked to taurine or glycine. tmpzr1t_l9r_go_relaxed.owl The bile acid is first activated using CoA by cholate-CoA ligase activity(GO:0047747), then conjugated to taurine or glycine by glycine N-choloyltransferase activity (GO:0047963; appears to use either glycine or taurine). hjd 2009-10-29T01:41:51Z biological_process owl:Class GO:0008206 biolink:NamedThing bile acid metabolic process The chemical reactions and pathways involving bile acids, a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine. tmpzr1t_l9r_go_relaxed.owl bile acid metabolism biological_process owl:Class GO:0009152 biolink:NamedThing purine ribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleotide biosynthesis|purine ribonucleotide formation|purine ribonucleotide synthesis|purine ribonucleotide anabolism biological_process owl:Class GO:1903626 biolink:NamedThing positive regulation of DNA catabolic process Any process that activates or increases the frequency, rate or extent of DNA catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of DNA catabolic process|activation of DNA breakdown|up regulation of DNA breakdown|positive regulation of DNA breakdown|up-regulation of DNA degradation|up regulation of DNA catabolism|up-regulation of DNA catabolism|activation of DNA catabolic process|positive regulation of DNA catabolism|upregulation of DNA breakdown|positive regulation of DNA degradation|up-regulation of DNA catabolic process|upregulation of DNA catabolic process|up regulation of DNA degradation|upregulation of DNA degradation|activation of DNA catabolism|activation of DNA degradation|upregulation of DNA catabolism|up-regulation of DNA breakdown sl 2014-11-19T22:36:51Z biological_process owl:Class GO:0002012 biolink:NamedThing vasoconstriction of artery involved in chemoreceptor response to lowering of systemic arterial blood pressure A process that is triggered by vasomotor excitation and results in a decrease in the diameter of an artery during the chemoreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905266 biolink:NamedThing blasticidin S biosynthetic process The chemical reactions and pathways resulting in the formation of blasticidin S. tmpzr1t_l9r_go_relaxed.owl blasticidin S anabolism|blasticidin S formation|blasticidin S biosynthesis|blasticidin S synthesis pr 2016-06-14T12:47:22Z biological_process owl:Class GO:1905264 biolink:NamedThing blasticidin S metabolic process The chemical reactions and pathways involving blasticidin S. tmpzr1t_l9r_go_relaxed.owl blasticidin S metabolism pr 2016-06-14T12:47:05Z biological_process owl:Class GO:0044500 biolink:NamedThing envenomation resulting in negative regulation of blood pressure in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant decrease of the force with which blood travels through the circulatory system of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl hypotensive activity in other organism jl 2012-02-01T02:40:50Z biological_process owl:Class GO:0044498 biolink:NamedThing envenomation resulting in modulation of blood pressure in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of the force with which blood travels through the circulatory system of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of blood pressure in other organism jl 2012-02-01T02:21:27Z biological_process owl:Class GO:1902972 biolink:NamedThing premeiotic DNA replication DNA ligation Any DNA ligation involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation involved in meiotic DNA replication|DNA ligation involved in meiotic cell cycle DNA replication jl 2014-05-06T15:20:53Z biological_process owl:Class GO:1903593 biolink:NamedThing regulation of histamine secretion by mast cell Any process that modulates the frequency, rate or extent of histamine secretion by mast cell. tmpzr1t_l9r_go_relaxed.owl als 2014-11-06T13:19:09Z biological_process owl:Class GO:0062168 biolink:NamedThing negative regulation of plus-end directed microtubule sliding Any process that stops, prevents, or reduces the frequency, rate, or extent of plus-end directed microtubule sliding. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-12T17:56:47Z biological_process owl:Class GO:0030548 biolink:NamedThing acetylcholine receptor regulator activity Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is changed. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000610 biolink:NamedThing negative regulation of thyroid hormone generation Any process that stops, prevents or reduces the frequency, rate or extent of thyroid hormone generation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T10:12:19Z biological_process owl:Class GO:0000314 biolink:NamedThing organellar small ribosomal subunit The smaller of the two subunits of an organellar ribosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000291 biolink:NamedThing nuclear-transcribed mRNA catabolic process, exonucleolytic The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail. tmpzr1t_l9r_go_relaxed.owl mRNA breakdown, exonucleolytic|nuclear mRNA catabolic process, exonucleolytic|mRNA degradation, exonucleolytic|exonucleolytic degradation of mRNA biological_process owl:Class GO:0035033 biolink:NamedThing histone deacetylase regulator activity Binds to and modulates the activity of histone deacetylase. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'histone deacetylase activity ; GO:0004407'. molecular_function owl:Class GO:1990524 biolink:NamedThing INA complex A protein complex located in the inner membrane of mitochondria that is involved in the assembly of the peripheral (or stator) stalk of the mitochondrial proton-transporting ATP synthase (also known as the F1F0 ATP synthase). In budding yeast, this complex includes Ina22p and Ina17p. tmpzr1t_l9r_go_relaxed.owl INAC jl 2014-11-03T16:03:39Z cellular_component owl:Class GO:0046157 biolink:NamedThing siroheme catabolic process The chemical reactions and pathways resulting in the breakdown of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. tmpzr1t_l9r_go_relaxed.owl siroheme degradation|sirohaem catabolic process|siroheme catabolism|siroheme breakdown|sirohaem catabolism biological_process owl:Class GO:0046156 biolink:NamedThing siroheme metabolic process The chemical reactions and pathways involving siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. tmpzr1t_l9r_go_relaxed.owl sirohaem metabolism|siroheme metabolism|sirohaem metabolic process biological_process owl:Class GO:2001190 biolink:NamedThing positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell Any process that activates or increases the frequency, rate or extent of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|positive regulation of T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|positive regulation of T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell yaf 2011-11-03T01:31:40Z biological_process owl:Class GO:0061168 biolink:NamedThing regulation of hair follicle placode formation Any process that modulates the rate, frequency, or extent of hair follicle placode formation, the developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-25T01:03:29Z biological_process owl:Class GO:0075315 biolink:NamedThing positive regulation of basidium development Any process that activates, maintains or increases the frequency, rate or extent of basidium development, a process that leads to the formation of basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to basidiomycetes and distinguishes them from other kinds of fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075314 biolink:NamedThing regulation of basidium development Any process that modulates the frequency, rate or extent of basidium development, a process that leads to the formation of a basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to Basidiomycetes and distinguishes them from other kinds of fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019576 biolink:NamedThing aerobic fructose catabolic process The chemical reactions and pathways resulting in the breakdown of fructose that occurs in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic fructose degradation|aerobic fructose catabolism|aerobic fructose breakdown biological_process owl:Class GO:0045689 biolink:NamedThing negative regulation of antipodal cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of antipodal cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of antipodal cell differentiation|inhibition of antipodal cell differentiation|down regulation of antipodal cell differentiation|downregulation of antipodal cell differentiation biological_process owl:Class GO:1905724 biolink:NamedThing positive regulation of trypanothione biosynthetic process Any process that activates or increases the frequency, rate or extent of trypanothione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of trypanothione anabolism|up regulation of trypanothione anabolism|positive regulation of trypanothione formation|upregulation of trypanothione biosynthetic process|up-regulation of trypanothione biosynthetic process|upregulation of trypanothione formation|activation of trypanothione anabolism|activation of trypanothione biosynthesis|positive regulation of trypanothione biosynthesis|activation of trypanothione synthesis|up-regulation of trypanothione formation|upregulation of trypanothione biosynthesis|positive regulation of trypanothione anabolism|up-regulation of trypanothione biosynthesis|up regulation of trypanothione synthesis|upregulation of trypanothione anabolism|up regulation of trypanothione biosynthesis|activation of trypanothione formation|up regulation of trypanothione biosynthetic process|upregulation of trypanothione synthesis|up-regulation of trypanothione synthesis|up regulation of trypanothione formation|positive regulation of trypanothione synthesis|activation of trypanothione biosynthetic process rz 2016-11-25T14:44:50Z biological_process owl:Class GO:1905722 biolink:NamedThing regulation of trypanothione biosynthetic process Any process that modulates the frequency, rate or extent of trypanothione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of trypanothione anabolism|regulation of trypanothione formation|regulation of trypanothione biosynthesis|regulation of trypanothione synthesis rz 2016-11-25T14:44:34Z biological_process owl:Class GO:0002624 biolink:NamedThing positive regulation of B cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of B cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl positive regulation of B-lymphocyte antigen processing and presentation|upregulation of B cell antigen processing and presentation|positive regulation of B-cell antigen processing and presentation|up regulation of B cell antigen processing and presentation|positive regulation of B lymphocyte antigen processing and presentation|activation of B cell antigen processing and presentation|up-regulation of B cell antigen processing and presentation|stimulation of B cell antigen processing and presentation biological_process owl:Class GO:0097387 biolink:NamedThing capitate projection Simple or compound process of epithelial glial cells with a spherical head that inserts into photoreceptor axons. Capitate projections have only been observed in Brachycera (flies). tmpzr1t_l9r_go_relaxed.owl pr 2012-10-22T13:57:10Z cellular_component owl:Class GO:0097386 biolink:NamedThing glial cell projection A prolongation or process extending from a glial cell. tmpzr1t_l9r_go_relaxed.owl glial projection|glial process pr 2012-10-22T13:55:54Z cellular_component owl:Class GO:0042487 biolink:NamedThing regulation of odontogenesis of dentin-containing tooth Any process that modulates the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates. tmpzr1t_l9r_go_relaxed.owl regulation of odontogenesis of dentine-containing tooth|regulation of odontogenesis of dentine-containing teeth biological_process owl:Class GO:0021715 biolink:NamedThing inferior olivary nucleus formation The process that gives rise to the inferior olivary nucleus. This process pertains to the initial formation of a structure from unspecified parts. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements. tmpzr1t_l9r_go_relaxed.owl inferior olive biosynthesis|inferior olive formation biological_process owl:Class GO:0033909 biolink:NamedThing fucoidanase activity Catalysis of the endohydrolysis of 1,2-alpha-L-fucoside linkages in fucoidan without release of sulfate. tmpzr1t_l9r_go_relaxed.owl poly(1,2-alpha-L-fucoside-4-sulfate) glycanohydrolase activity MetaCyc:RXN-20949|EC:3.2.1.211 molecular_function owl:Class GO:0070809 biolink:NamedThing negative regulation of Hulle cell development Any process that stops, prevents, or reduces the frequency, rate or extent of Hulle cell development, a process that leads to the formation of Hulle cells. Hulle cells are specialized multinucleate cells that originate from a nest-like aggregation of hyphae during sexual development and serve as nurse cells to the developing cleistothecium, or fruiting body. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:53:11Z biological_process owl:Class GO:1905736 biolink:NamedThing negative regulation of L-proline import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-proline import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-04T20:42:24Z biological_process owl:Class GO:0000160 biolink:NamedThing phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. tmpzr1t_l9r_go_relaxed.owl histidyl-aspartyl phosphorelay biological_process owl:Class GO:0001408 biolink:NamedThing guanine nucleotide transport The directed movement of guanine nucleotides, GTP, GDP, and/or GMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015865 biolink:NamedThing purine nucleotide transport The directed movement of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031231 biolink:NamedThing intrinsic component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to peroxisomal membrane cellular_component owl:Class GO:0032208 biolink:NamedThing negative regulation of telomere maintenance via recombination Any process that stops, prevents, or reduces the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length. tmpzr1t_l9r_go_relaxed.owl down regulation of telomere maintenance via recombination|downregulation of telomere maintenance via recombination|inhibition of telomere maintenance via recombination|down-regulation of telomere maintenance via recombination biological_process owl:Class GO:0032207 biolink:NamedThing regulation of telomere maintenance via recombination Any process that modulates the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901942 biolink:NamedThing (+)-epi-alpha-bisabolol catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-epi-alpha-bisabolol. tmpzr1t_l9r_go_relaxed.owl (+)-epi-alpha-bisabolol catabolism|(+)-epi-alpha-bisabolol degradation|(+)-epi-alpha-bisabolol breakdown ms 2013-02-18T14:55:41Z biological_process owl:Class GO:0016107 biolink:NamedThing sesquiterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of sesquiterpenoid compounds, terpenoids with three isoprene units. tmpzr1t_l9r_go_relaxed.owl sesquiterpenoid degradation|sesquiterpenoid breakdown|sesquiterpenoid catabolism biological_process owl:Class GO:0046501 biolink:NamedThing protoporphyrinogen IX metabolic process The chemical reactions and pathways involving protoporphyrinogen IX, the specific substrate for the enzyme ferrochelatase, which catalyzes the insertion of iron to form protoheme. It is probably also the substrate for chlorophyll formation. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen IX metabolism See also the molecular function term 'ferrochelatase activity ; GO:0004325'. biological_process owl:Class GO:0006778 biolink:NamedThing porphyrin-containing compound metabolic process The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. tmpzr1t_l9r_go_relaxed.owl porphyrin metabolic process|porphyrin metabolism biological_process owl:Class GO:0043671 biolink:NamedThing endexine The inner part of the exine, which stains. tmpzr1t_l9r_go_relaxed.owl Note that endexine is distinguished on staining properties; compare with 'sexine ; GO:0043673'. See also 'ectexine ; GO:0043669'. cellular_component owl:Class GO:0080163 biolink:NamedThing regulation of protein serine/threonine phosphatase activity Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl regulation of protein phosphatase type 2c activity dhl 2010-09-23T03:51:37Z biological_process owl:Class GO:0043666 biolink:NamedThing regulation of phosphoprotein phosphatase activity Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl regulation of protein phosphatase type 2A activity|regulation of protein phosphatase type 2B activity|regulation of calcineurin activity|regulation of protein phosphatase type 2 activity|regulation of protein phosphatase 3 activity GO:0034047|GO:0032512 biological_process owl:Class GO:0102440 biolink:NamedThing 3',4',5'-trimethylmyricetin 3-O-methyltransferase activity Catalysis of the reaction: 3',4',5'-trimethylmyricetin + S-adenosyl-L-methionine <=> 3,3',4',5'-tetramethylmyricetin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13918 molecular_function owl:Class GO:0106045 biolink:NamedThing guanine deglycation, methylglyoxal removal The removal of methylglyoxal from a glycated guanine, to form lactate and a deglycated guanine. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-01T18:17:28Z biological_process owl:Class GO:0140041 biolink:NamedThing cellular detoxification of methylglyoxal Any process carried out at the cellular level that reduces or removes the toxicity of methylglyoxal. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-16T09:43:30Z biological_process owl:Class GO:1903743 biolink:NamedThing negative regulation of anterograde synaptic vesicle transport Any process that stops, prevents or reduces the frequency, rate or extent of anterograde synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl down regulation of anterograde synaptic vesicle transport|down-regulation of anterograde synaptic vesicle transport|downregulation of anterograde synaptic vesicle transport|inhibition of anterograde synaptic vesicle transport kmv 2014-12-12T16:28:37Z biological_process owl:Class GO:0048390 biolink:NamedThing intermediate mesoderm morphogenesis The process in which the anatomical structures of the intermediate mesoderm are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901597 biolink:NamedThing response to carbendazim Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbendazim stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T17:17:06Z biological_process owl:Class GO:0002716 biolink:NamedThing negative regulation of natural killer cell mediated immunity Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated immunity. tmpzr1t_l9r_go_relaxed.owl negative regulation of natural killer cell activity|down-regulation of natural killer cell mediated immunity|inhibition of natural killer cell mediated immunity|down regulation of natural killer cell mediated immunity|negative regulation of NK cell activity|negative regulation of NK cell mediated immunity|downregulation of natural killer cell mediated immunity GO:0030102 biological_process owl:Class GO:0016035 biolink:NamedThing zeta DNA polymerase complex A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032441 biolink:NamedThing pheophorbide a oxygenase activity Catalysis of the reaction: pheophorbide a + reduced ferredoxin + 2 O2 = red chlorophyll catabolite + oxidized ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:48140|EC:1.14.15.17|MetaCyc:RXN-7740 molecular_function owl:Class GO:0016730 biolink:NamedThing oxidoreductase activity, acting on iron-sulfur proteins as donors Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on iron-sulphur proteins as donors EC:1.18.-.- molecular_function owl:Class GO:0042716 biolink:NamedThing plasma membrane-derived chromatophore A pigment-bearing structure that is derived from the cytoplasmic membrane, sometimes consisting of simple invaginations and sometimes a complete vesicle. This component is found in certain photosynthetic bacteria and cyanobacteria. tmpzr1t_l9r_go_relaxed.owl chromatophore vesicle Note that this structure is distinct from the chromoplast of plants, which is also sometimes called a chromatophore; it also should not be confused with the specialized pigment-producing cells known as chromatophores, found in fish and amphibian skin. cellular_component owl:Class GO:0072731 biolink:NamedThing cellular response to papulacandin B Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a papulacandin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-05-31T11:30:39Z biological_process owl:Class GO:0047240 biolink:NamedThing lactosylceramide beta-1,3-galactosyltransferase activity Catalysis of the reaction: D-galactosyl-(1->4)-beta-D-glucosyl-R + UDP-D-galactose = D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-R + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:D-galactosyl-1,4-beta-D-glucosyl-R beta-1,3-galactosyltransferase activity|UDPgalactose:D-galactosyl-1,4-beta-D-glucosyl-R beta-1,3-galactosyltransferase activity|uridine diphosphogalactose-lactosylceramide beta1->3-galactosyltransferase activity MetaCyc:2.4.1.179-RXN|RHEA:18413|KEGG_REACTION:R04431|EC:2.4.1.179 molecular_function owl:Class GO:0140592 biolink:NamedThing histone methyltransferase activity (H3-R8 specific) Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 8) = S-adenosyl-L-homocysteine + (histone H3-N-methyl-arginine (position 8). This reaction is the addition of a methyl group to arginine at position 8 of histone H3. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20037 pg 2021-02-09T14:13:17Z molecular_function owl:Class GO:0015775 biolink:NamedThing beta-glucan transport The directed movement of beta-glucans into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Beta-glucans are compounds composed of glucose residues linked by beta-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015774 biolink:NamedThing polysaccharide transport The directed movement of polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015550 biolink:NamedThing galacturonate transmembrane transporter activity Enables the transfer of galacturonate from one side of a membrane to the other. Galacturonate is the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102082 biolink:NamedThing demethylrebeccamycin--D-glucose O-methyltransferase activity Catalysis of the reaction: 4'-demethylrebeccamycin + S-adenosyl-L-methionine <=> H+ + rebeccamycin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:27353|EC:2.1.1.164|MetaCyc:RXN-10847 molecular_function owl:Class GO:1900459 biolink:NamedThing positive regulation of brassinosteroid mediated signaling pathway Any process that activates or increases the frequency, rate or extent of brassinosteroid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of brassinosteroid mediated signalling|activation of brassinosteroid mediated signaling pathway|up-regulation of brassinosteroid mediated signaling pathway|up-regulation of brassinosteroid mediated signalling|up regulation of brassinosteroid mediated signaling pathway|activation of brassinosteroid mediated signalling|upregulation of brassinosteroid mediated signaling pathway|upregulation of brassinosteroid mediated signalling|up regulation of brassinosteroid mediated signalling dhl 2012-05-01T06:12:23Z biological_process owl:Class GO:1900457 biolink:NamedThing regulation of brassinosteroid mediated signaling pathway Any process that modulates the frequency, rate or extent of brassinosteroid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of brassinosteroid mediated signalling dhl 2012-05-01T06:12:04Z biological_process owl:Class GO:0140352 biolink:NamedThing export from cell The directed movement of some substance from a cell, into the extracellular region. This may occur via transport across the plasma membrane or via exocytosis. tmpzr1t_l9r_go_relaxed.owl efflux pg 2019-05-22T11:20:45Z biological_process owl:Class GO:0003354 biolink:NamedThing negative regulation of cilium movement Any process that decreases the rate, frequency, or extent of cilium movement, the directed, self-propelled movement of a cilium. tmpzr1t_l9r_go_relaxed.owl negative regulation of microtubule-based flagellum movement|negative regulation of flagellum movement Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2009-12-03T10:17:47Z GO:1900173 biological_process owl:Class GO:1903763 biolink:NamedThing gap junction channel activity involved in cell communication by electrical coupling Any gap junction channel activity that is involved in cell communication by electrical coupling. tmpzr1t_l9r_go_relaxed.owl connexin involved in cell communication by electrical coupling|innexin involved in cell communication by electrical coupling|innexin channel activity involved in cell communication by electrical coupling rl 2014-12-19T15:43:16Z molecular_function owl:Class GO:0008454 biolink:NamedThing alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + (N-acetyl-beta-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,4-(N-acetyl-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-glycopeptide beta-4-acetylglucosaminyltransferase IV activity|alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-glycopeptide beta4-acetylglucosaminyltransferase IV|UDP-N-acetyl-D-glucosamine:3-[2-(N-acetyl-beta-D-glucosaminyl)-alpha-D-mannosyl]-glycoprotein 4-beta-N-acetyl-D-glucosaminyltransferase activity|N-acetylglucosaminyltransferase IV activity|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IV activity|GnTIV activity|beta-acetylglucosaminyltransferase IV activity|alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase activity Reactome:R-HSA-975903|EC:2.4.1.145|RHEA:16057|Reactome:R-HSA-9696980|MetaCyc:2.4.1.145-RXN molecular_function owl:Class GO:0034286 biolink:NamedThing response to maltose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a maltose stimulus. tmpzr1t_l9r_go_relaxed.owl response to maltose stimulus biological_process owl:Class GO:0043076 biolink:NamedThing megasporocyte nucleus The nucleus of a megasporocyte, a diploid cell that undergoes meiosis to produce four megaspores, and its descendents. tmpzr1t_l9r_go_relaxed.owl megaspore mother cell nucleus cellular_component owl:Class GO:1901454 biolink:NamedThing regulation of response to toluene Any process that modulates the frequency, rate or extent of response to toluene. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:22:17Z biological_process owl:Class GO:0008888 biolink:NamedThing glycerol dehydrogenase [NAD+] activity Catalysis of the reaction: glycerol + NAD(+) = glycerone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl NAD-linked glycerol dehydrogenase activity|glycerol dehydrogenase activity KEGG_REACTION:R01034|RHEA:13769|MetaCyc:GLYCDEH-RXN|EC:1.1.1.6 molecular_function owl:Class GO:0015056 biolink:NamedThing corticotrophin-releasing factor receptor activity Combining with the corticotrophin-releasing factor family of ligands, including the urocortins, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900573 biolink:NamedThing emodin metabolic process The chemical reactions and pathways involving emodin. tmpzr1t_l9r_go_relaxed.owl emodin metabolism di 2012-05-15T06:41:44Z biological_process owl:Class GO:1903848 biolink:NamedThing negative regulation of aorta morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of aorta morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of aorta morphogenesis|down regulation of aorta morphogenesis|down-regulation of aorta morphogenesis|downregulation of aorta morphogenesis rph 2015-01-23T14:01:01Z biological_process owl:Class GO:1903847 biolink:NamedThing regulation of aorta morphogenesis Any process that modulates the frequency, rate or extent of aorta morphogenesis. tmpzr1t_l9r_go_relaxed.owl rph 2015-01-23T14:00:51Z biological_process owl:Class GO:0017187 biolink:NamedThing peptidyl-glutamic acid carboxylation The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0032 See also the molecular function term 'gamma-glutamyl carboxylase activity ; GO:0008488'. biological_process owl:Class GO:1900065 biolink:NamedThing regulation of ethanol catabolic process Any process that modulates the frequency, rate or extent of ethanol catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ethanol degradation|regulation of ethanol breakdown|regulation of ethanol catabolism dph 2012-01-26T01:51:40Z biological_process owl:Class GO:1902387 biolink:NamedThing ceramide 1-phosphate binding Binding to ceramide 1-phosphate. tmpzr1t_l9r_go_relaxed.owl uh 2013-09-05T05:51:08Z molecular_function owl:Class GO:0072269 biolink:NamedThing metanephric long descending thin limb development The process whose specific outcome is the progression of the metanephric long descending thin limb over time, from its formation to the mature structure. The metanephric long descending thin limb is the descending thin limb of a long nephron in the metanephros that has a squamous epithelial morphology. The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T03:12:05Z biological_process owl:Class GO:0072064 biolink:NamedThing long descending thin limb development The process whose specific outcome is the progression of the long descending thin limb over time, from its formation to the mature structure. The long descending thin limb is the descending thin limb of a long nephron that has a squamous epithelial morphology. The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:13:17Z biological_process owl:Class GO:0030150 biolink:NamedThing protein import into mitochondrial matrix The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. tmpzr1t_l9r_go_relaxed.owl mitochondrial translocation|protein transport into mitochondrial matrix|mitochondrial matrix protein import biological_process owl:Class GO:0006839 biolink:NamedThing mitochondrial transport Transport of substances into, out of or within a mitochondrion. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22316 biological_process owl:Class GO:0090093 biolink:NamedThing regulation of fungal-type cell wall beta-glucan biosynthetic process Any process that modulates the frequency, rate or extent of fungal-type cell wall beta-glucan biosynthesis, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-13T10:10:38Z biological_process owl:Class GO:0075282 biolink:NamedThing negative regulation of uredinium development Any process that stops, prevents, or reduces the frequency, rate or extent of uredinium development, a process that leads to the formation of a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046636 biolink:NamedThing negative regulation of alpha-beta T cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl down-regulation of alpha-beta T cell activation|down regulation of alpha-beta T cell activation|negative regulation of alpha-beta T-cell activation|negative regulation of alpha-beta T-lymphocyte activation|inhibition of alpha-beta T cell activation|negative regulation of alpha-beta T lymphocyte activation|downregulation of alpha-beta T cell activation biological_process owl:Class GO:0033731 biolink:NamedThing arogenate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: L-arogenate + NAD(P)+ = L-tyrosine + NAD(P)H + CO2. tmpzr1t_l9r_go_relaxed.owl arogenic dehydrogenase activity|pretyrosine dehydrogenase activity|L-arogenate:NAD(P)+ oxidoreductase (decarboxylating) activity MetaCyc:1.3.1.79-RXN|EC:1.3.1.79 molecular_function owl:Class GO:0060994 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in kidney development Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the branching morphogenesis by which the kidney progresses from its initial formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-19T08:24:46Z biological_process owl:Class GO:1900451 biolink:NamedThing positive regulation of glutamate receptor signaling pathway Any process that activates or increases the frequency, rate or extent of glutamate receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of glutamate signaling pathway|upregulation of glutamate receptor signaling pathway|positive regulation of glutamate signalling pathway|up regulation of glutamate receptor signaling pathway|activation of glutamate signalling pathway|activation of glutamate receptor signaling pathway|activation of glutamate signaling pathway|up regulation of glutamate signaling pathway|up regulation of glutamate signalling pathway|up-regulation of glutamate receptor signaling pathway|upregulation of glutamate signaling pathway|up-regulation of glutamate signalling pathway|up-regulation of glutamate signaling pathway|upregulation of glutamate signalling pathway rl 2012-04-27T03:46:03Z biological_process owl:Class GO:0009196 biolink:NamedThing pyrimidine deoxyribonucleoside diphosphate metabolic process The chemical reactions and pathways involving pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside diphosphate metabolism biological_process owl:Class GO:0010373 biolink:NamedThing negative regulation of gibberellin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins. tmpzr1t_l9r_go_relaxed.owl negative regulation of gibberellic acid biosynthetic process biological_process owl:Class GO:0045827 biolink:NamedThing negative regulation of isoprenoid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving isoprenoid. tmpzr1t_l9r_go_relaxed.owl inhibition of isoprenoid metabolic process|down regulation of isoprenoid metabolic process|downregulation of isoprenoid metabolic process|negative regulation of isoprenoid metabolism|down-regulation of isoprenoid metabolic process biological_process owl:Class GO:0018085 biolink:NamedThing peptidyl-L-amino acid racemization The process of conversion of a L-amino acid into its enantiomer, the corresponding D-amino acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905539 biolink:NamedThing regulation of postsynapse to nucleus signaling pathway Any process that modulates the frequency, rate or extent of postsynapse to nucleus signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic signaling to nucleus dos 2016-10-07T17:03:38Z biological_process owl:Class GO:0061950 biolink:NamedThing negative regulation of premature acrosome loss Any process that stops, prevents or reduces the discharge, by sperm, of a single, anterior secretory granule before the sperm reaches to the zona pellucida of the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the exocytosis of the acrosomal contents. tmpzr1t_l9r_go_relaxed.owl negative regulation of spontaneous acrosome loss dph 2017-10-25T17:56:47Z biological_process owl:Class GO:0007073 biolink:NamedThing positive regulation of transcription involved in exit from mitosis, from RNA polymerase I promoter Any process that increases the frequency, rate or extent of transcription from an RNA polymerase I promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl activation of transcription on exit from mitosis, from RNA polymerase I promoter|activation of transcription on exit from mitosis, from Pol I promoter biological_process owl:Class GO:0007072 biolink:NamedThing positive regulation of transcription involved in exit from mitosis Any process that increases the frequency, rate or extent of transcription as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl activation of transcription on exit from mitosis biological_process owl:Class GO:0010450 biolink:NamedThing inflorescence meristem growth The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043315 biolink:NamedThing positive regulation of neutrophil degranulation Any process that activates or increases the frequency, rate or extent of neutrophil degranulation. tmpzr1t_l9r_go_relaxed.owl up regulation of neutrophil degranulation|up-regulation of neutrophil degranulation|activation of neutrophil degranulation|positive regulation of neutrophil granule exocytosis|stimulation of neutrophil degranulation|upregulation of neutrophil degranulation biological_process owl:Class GO:0030678 biolink:NamedThing mitochondrial ribonuclease P complex A ribonuclease P complex located in the mitochondrion of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. The subunit composition of mitochondrial ribonuclease P complexes varies between species. The complex contains a single RNA molecule and a single protein molecule in yeast (PMID:12045094), but comprises three proteins and lacks an RNA component in humans. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNase P complex https://github.com/geneontology/go-ontology/issues/20778 cellular_component owl:Class GO:0098798 biolink:NamedThing mitochondrial protein-containing complex A protein complex that is part of a mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial protein complex Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cellular_component owl:Class GO:1903068 biolink:NamedThing positive regulation of protein localization to cell tip Any process that activates or increases the frequency, rate or extent of protein localization to cell tip. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localisation to cell tip|activation of protein localization to cell tip|up-regulation of protein localization to cell tip|positive regulation of protein localisation to cell tip|upregulation of protein localisation to cell tip|up regulation of protein localization to cell tip|upregulation of protein localization to cell tip|up regulation of protein localisation to cell tip|activation of protein localisation to cell tip vw 2014-05-28T15:48:54Z biological_process owl:Class GO:1903066 biolink:NamedThing regulation of protein localization to cell tip Any process that modulates the frequency, rate or extent of protein localization to cell tip. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to cell tip vw 2014-05-28T15:48:42Z biological_process owl:Class GO:0018057 biolink:NamedThing peptidyl-lysine oxidation The oxidation of the terminal amino-methylene groups of peptidyl-L-lysine or peptidyl-5-hydroxy-L-lysine to aldehyde groups to form allysine or hydroxyallysine residues, respectively; these are intermediates in the formation of covalent cross-links between adjacent polypeptide chains in proteins such as collagens. tmpzr1t_l9r_go_relaxed.owl RESID:AA0121 biological_process owl:Class GO:0070107 biolink:NamedThing regulation of interleukin-27-mediated signaling pathway Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27-mediated binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of IL27RA/IL6ST signaling pathway|regulation of IL-27-mediated signaling pathway|regulation of interleukin-27-mediated signalling pathway biological_process owl:Class GO:0044223 biolink:NamedThing pirellulosome A cytoplasmic structure found in bacterial phyla Planctomycetes and Verrucomicrobia containing a condensed nucleoid and ribosomes and surrounded by an intracytoplasmic membrane. It is surrounded by ribosome-free cytoplasm, in a compartment called the paryphoplasm. tmpzr1t_l9r_go_relaxed.owl jl 2009-11-12T04:08:07Z cellular_component owl:Class GO:0042702 biolink:NamedThing uterine wall growth The regrowth of the endometrium and blood vessels in the uterus following menstruation, resulting from a rise in progesterone levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900683 biolink:NamedThing regulation of fumonisin biosynthetic process Any process that modulates the frequency, rate or extent of fumonisin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of fumonisin synthesis|regulation of fumonisin formation|regulation of fumonisin anabolism|regulation of fumonisin biosynthesis di 2012-05-22T04:29:38Z biological_process owl:Class GO:0042886 biolink:NamedThing amide transport The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070960 biolink:NamedThing positive regulation of neutrophil mediated cytotoxicity Any process that increases the frequency, rate or extent of the directed killing of a target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl activation of neutrophil mediated cytotoxicity|up-regulation of neutrophil mediated cytotoxicity|stimulation of neutrophil mediated cytotoxicity|upregulation of neutrophil mediated cytotoxicity|positive regulation of neutrophil mediated cell killing|up regulation of neutrophil mediated cytotoxicity mah 2009-10-01T02:28:49Z biological_process owl:Class GO:1902808 biolink:NamedThing positive regulation of cell cycle G1/S phase transition Any signalling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl activation of cell cycle G1/S phase transition|up regulation of cell cycle G1/S phase transition|up-regulation of cell cycle G1/S phase transition|upregulation of cell cycle G1/S phase transition jl 2014-03-26T16:36:32Z biological_process owl:Class GO:1900232 biolink:NamedThing negative regulation of single-species biofilm formation on inanimate substrate Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation on inanimate substrate. tmpzr1t_l9r_go_relaxed.owl down regulation of single-species biofilm formation on inanimate substrate|downregulation of single-species biofilm formation on inanimate substrate|down-regulation of single-species biofilm formation on inanimate substrate|inhibition of single-species biofilm formation on inanimate substrate di 2012-03-23T04:40:45Z biological_process owl:Class GO:1900859 biolink:NamedThing negative regulation of brevianamide F biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of brevianamide F biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of brevianamide F biosynthetic process|down-regulation of brevianamide F biosynthetic process|downregulation of brevianamide F biosynthetic process di 2012-06-07T09:53:17Z biological_process owl:Class GO:0006096 biolink:NamedThing glycolytic process The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. tmpzr1t_l9r_go_relaxed.owl modifed Embden-Meyerhof pathway|Embden-Meyerhof-Parnas pathway|Embden-Meyerhof pathway|anaerobic glycolysis|glycolysis MetaCyc:GLYCOLYSIS-VARIANTS GO:0019642|GO:0019641 biological_process owl:Class GO:0102864 biolink:NamedThing 1-18:3-2-18:2-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-18:3-2-18:2-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:3-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8331 molecular_function owl:Class GO:1904775 biolink:NamedThing positive regulation of ubiquinone biosynthetic process Any process that activates or increases the frequency, rate or extent of ubiquinone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of ubiquinone anabolism|positive regulation of ubiquinone anabolism|up regulation of coenzyme Q10 biosynthetic process|positive regulation of ubiquinone biosynthesis|upregulation of coenzyme Q biosynthesis|up-regulation of ubiquinone synthesis|positive regulation of coenzyme Q6 biosynthesis|positive regulation of coenzyme Q biosynthesis|upregulation of coenzyme Q10 biosynthesis|positive regulation of coenzyme Q9 biosynthesis|upregulation of coenzyme Q6 biosynthetic process|up regulation of ubiquinone biosynthesis|activation of ubiquinone formation|upregulation of coenzyme Q8 biosynthetic process|activation of coenzyme Q8 biosynthesis|up-regulation of ubiquinone formation|up-regulation of coenzyme Q6 biosynthesis|positive regulation of coenzyme Q biosynthetic process|up regulation of coenzyme Q8 biosynthesis|up-regulation of coenzyme Q10 biosynthetic process|upregulation of ubiquinone formation|up-regulation of coenzyme Q10 biosynthesis|activation of coenzyme Q9 biosynthesis|activation of coenzyme Q10 biosynthetic process|activation of coenzyme Q6 biosynthesis|activation of coenzyme Q9 biosynthetic process|activation of ubiquinone biosynthetic process|up-regulation of coenzyme Q8 biosynthesis|activation of coenzyme Q biosynthetic process|up-regulation of coenzyme Q6 biosynthetic process|up-regulation of ubiquinone biosynthetic process|positive regulation of ubiquinone formation|up regulation of coenzyme Q biosynthetic process|positive regulation of coenzyme Q6 biosynthetic process|activation of coenzyme Q biosynthesis|activation of ubiquinone biosynthesis|up regulation of coenzyme Q8 biosynthetic process|positive regulation of coenzyme Q10 biosynthetic process|up-regulation of coenzyme Q9 biosynthesis|upregulation of ubiquinone synthesis|upregulation of coenzyme Q9 biosynthetic process|up-regulation of coenzyme Q biosynthetic process|up regulation of coenzyme Q6 biosynthesis|upregulation of coenzyme Q10 biosynthetic process|up regulation of coenzyme Q10 biosynthesis|up regulation of coenzyme Q9 biosynthesis|up regulation of ubiquinone synthesis|up regulation of ubiquinone formation|positive regulation of coenzyme Q9 biosynthetic process|upregulation of ubiquinone anabolism|activation of coenzyme Q8 biosynthetic process|activation of coenzyme Q6 biosynthetic process|up-regulation of coenzyme Q biosynthesis|up-regulation of coenzyme Q8 biosynthetic process|up regulation of coenzyme Q biosynthesis|upregulation of ubiquinone biosynthetic process|up-regulation of coenzyme Q9 biosynthetic process|activation of ubiquinone synthesis|upregulation of ubiquinone biosynthesis|positive regulation of coenzyme Q8 biosynthesis|positive regulation of ubiquinone synthesis|up-regulation of ubiquinone biosynthesis|positive regulation of coenzyme Q10 biosynthesis|upregulation of coenzyme Q9 biosynthesis|upregulation of coenzyme Q6 biosynthesis|up regulation of coenzyme Q6 biosynthetic process|positive regulation of coenzyme Q8 biosynthetic process|activation of coenzyme Q10 biosynthesis|up regulation of ubiquinone anabolism|upregulation of coenzyme Q8 biosynthesis|activation of ubiquinone anabolism|up regulation of coenzyme Q9 biosynthetic process|upregulation of coenzyme Q biosynthetic process|up regulation of ubiquinone biosynthetic process sl 2015-10-28T21:21:26Z biological_process owl:Class GO:0010788 biolink:NamedThing COPI coating of Golgi vesicle, cis-Golgi to rough ER The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of cis-Golgi to rough ER transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048205 biolink:NamedThing COPI coating of Golgi vesicle The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl COPI coating of Golgi-derived vesicle|COPI vesicle coating biological_process owl:Class GO:0035604 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which activates or increases the frequency, rate or extent of cell proliferation in the bone marrow. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in positive regulation of cell proliferation in bone marrow|FGFR signaling pathway involved in positive regulation of cell proliferation in bone marrow|FGF receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow bf 2010-11-15T11:10:14Z biological_process owl:Class GO:1905492 biolink:NamedThing positive regulation of branching morphogenesis of a nerve Any process that activates or increases the frequency, rate or extent of branching morphogenesis of a nerve. tmpzr1t_l9r_go_relaxed.owl upregulation of branching morphogenesis of a nerve|up-regulation of branching morphogenesis of a nerve|up regulation of branching morphogenesis of a nerve|activation of branching morphogenesis of a nerve hbye 2016-09-23T14:11:52Z biological_process owl:Class GO:0042054 biolink:NamedThing histone methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + histone = S-adenosyl-L-homocysteine + methyl-histone. Histone methylation generally occurs on either an arginine or lysine residue. tmpzr1t_l9r_go_relaxed.owl histone methylase activity EC:2.1.1.354 molecular_function owl:Class GO:0032927 biolink:NamedThing positive regulation of activin receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of activin receptor signaling pathway|up regulation of activin receptor signaling pathway|stimulation of activin receptor signaling pathway|positive regulation of activin receptor signalling pathway|positive regulation of activin signaling pathway|upregulation of activin receptor signaling pathway|activation of activin receptor signaling pathway|positive regulation of activin signalling pathway biological_process owl:Class GO:0016701 biolink:NamedThing oxidoreductase activity, acting on single donors with incorporation of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor. tmpzr1t_l9r_go_relaxed.owl oxygenase|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous EC:1.13.-.- molecular_function owl:Class GO:1903366 biolink:NamedThing negative regulation of fear response Any process that stops, prevents or reduces the frequency, rate or extent of fear response. tmpzr1t_l9r_go_relaxed.owl down regulation of physiological fear response|down-regulation of physiological fear response|down-regulation of fear response|down regulation of fear response|downregulation of physiological fear response|inhibition of physiological fear response|downregulation of fear response|inhibition of fear response|negative regulation of physiological fear response mr 2014-08-21T23:21:45Z biological_process owl:Class GO:0097623 biolink:NamedThing potassium ion export across plasma membrane The directed movement of potassium ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl potassium export|potassium export across plasma membrane|potassium ion export|potassium ion export from cell https://github.com/geneontology/go-ontology/issues/14265 pr 2009-12-16T11:10:45Z GO:0098668|GO:0071435 biological_process owl:Class GO:0050054 biolink:NamedThing lignostilbene alpha beta-dioxygenase activity Catalysis of the reaction: 1,2-bis(4-hydroxy-3-methoxyphenyl)ethylene + O(2) = 2 vanillin. tmpzr1t_l9r_go_relaxed.owl 1,2-bis(4-hydroxy-3-methoxyphenyl)ethylene:oxygen oxidoreductase (alphabeta-bond-cleaving)|lignostilbene ab-dioxygenase activity|lignostilbene alphabeta-dioxygenase activity MetaCyc:LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN|KEGG_REACTION:R00043|EC:1.13.11.43|RHEA:21340 molecular_function owl:Class GO:0060754 biolink:NamedThing positive regulation of mast cell chemotaxis Any process that increases the rate, frequency or extent of mast cell chemotaxis. Mast cell chemotaxis is the movement of a mast cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:38:19Z biological_process owl:Class GO:0097477 biolink:NamedThing lateral motor column neuron migration The orderly movement of a lateral motor column neuron from one site to another. A lateral motor column neuron is a motor neuron that is generated only on limb levels and send axons into the limb mesenchyme. tmpzr1t_l9r_go_relaxed.owl pr 2013-04-23T13:05:32Z biological_process owl:Class GO:0097476 biolink:NamedThing spinal cord motor neuron migration The orderly movement of a spinal cord motor neuron from one site to another. A spinal cord motor neuron is a motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement. tmpzr1t_l9r_go_relaxed.owl pr 2013-04-23T13:03:46Z biological_process owl:Class GO:0008453 biolink:NamedThing alanine-glyoxylate transaminase activity Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine. tmpzr1t_l9r_go_relaxed.owl alanine--glyoxylate aminotransferase activity|alanine-glyoxylic aminotransferase activity|L-alanine:glyoxylate aminotransferase activity|L-alanine-glycine transaminase activity|AGT activity|alanine-glyoxylate aminotransferase activity MetaCyc:ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|Reactome:R-HSA-904864|RHEA:24248|EC:2.6.1.44|Reactome:R-HSA-389684 molecular_function owl:Class GO:0070146 biolink:NamedThing mitochondrial aspartyl-tRNA aminoacylation The process of coupling aspartate to aspartyl-tRNA in a mitochondrion, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006422 biolink:NamedThing aspartyl-tRNA aminoacylation The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. The aspartyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an aspartic acid accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106255 biolink:NamedThing hydroperoxy icosatetraenoate isomerase activity A hydroperoxy icosatetraenoate <=> a hydroxy epoxy icosatrienoate. tmpzr1t_l9r_go_relaxed.owl EC:5.4.4.7|RHEA:55560 hjd 2020-03-20T14:00:30Z molecular_function owl:Class GO:0019657 biolink:NamedThing glycolytic fermentation to propionate Glycolytic fermentation resulting in the catabolism of glucose to propionate, yielding energy in the form of ATP; an alternative to the acrylate pathway to produce propionate. tmpzr1t_l9r_go_relaxed.owl succinate-propionate fermentation MetaCyc:P108-PWY biological_process owl:Class GO:0006105 biolink:NamedThing succinate metabolic process The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle. tmpzr1t_l9r_go_relaxed.owl succinate metabolism biological_process owl:Class GO:0000394 biolink:NamedThing RNA splicing, via endonucleolytic cleavage and ligation Splicing of RNA via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. tmpzr1t_l9r_go_relaxed.owl mRNA splicing Note that while typically associated with tRNA splicing, this mechanism of splicing is known to be used for some non-tRNA substrates, e.g. HAC1 (YFL031W) in S. cerevisiae and an intron in the 23S rRNA of the Archaeal species Desulfurococcus mobilis. biological_process owl:Class GO:0008380 biolink:NamedThing RNA splicing The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. tmpzr1t_l9r_go_relaxed.owl pre-mRNA splicing factor activity Wikipedia:RNA_splicing GO:0006395 biological_process owl:Class GO:0035790 biolink:NamedThing platelet-derived growth factor receptor-alpha signaling pathway A series of molecular signals initiated by the binding of a ligand to an alpha-type platelet-derived growth factor receptor (PDGFalpha) on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl platelet-derived growth factor receptor-alpha signalling pathway|PDGFR-alpha signaling pathway|alphaPDGF receptor signaling pathway|PDGF receptor-alpha signaling pathway bf 2011-04-06T10:55:16Z biological_process owl:Class GO:1900075 biolink:NamedThing positive regulation of neuromuscular synaptic transmission Any process that activates or increases the frequency, rate or extent of neuromuscular synaptic transmission. tmpzr1t_l9r_go_relaxed.owl activation of neuromuscular synaptic transmission|upregulation of neuromuscular synaptic transmission|up regulation of neuromuscular synaptic transmission|up-regulation of neuromuscular synaptic transmission kmv 2012-01-26T10:14:22Z biological_process owl:Class GO:0071280 biolink:NamedThing cellular response to copper ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to copper mah 2009-12-10T03:57:03Z biological_process owl:Class GO:0046688 biolink:NamedThing response to copper ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl copper sensitivity/resistance|response to copper biological_process owl:Class GO:0070568 biolink:NamedThing guanylyltransferase activity Catalysis of the transfer of a guanylyl group to an acceptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-15T11:05:47Z molecular_function owl:Class GO:1900858 biolink:NamedThing regulation of brevianamide F biosynthetic process Any process that modulates the frequency, rate or extent of brevianamide F biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of brevianamide F formation|regulation of brevianamide F biosynthesis|regulation of brevianamide F anabolism|regulation of brevianamide F synthesis di 2012-06-07T09:52:56Z biological_process owl:Class GO:1901376 biolink:NamedThing organic heteropentacyclic compound metabolic process The chemical reactions and pathways involving organic heteropentacyclic compound. tmpzr1t_l9r_go_relaxed.owl organic heteropentacyclic compound metabolism bf 2012-09-28T12:50:41Z biological_process owl:Class GO:1904014 biolink:NamedThing response to serotonin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a serotonin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T19:33:54Z biological_process owl:Class GO:0071867 biolink:NamedThing response to monoamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monoamine stimulus. A monoamine is any of a group of molecular messengers that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan. tmpzr1t_l9r_go_relaxed.owl response to monoamine stimulus mah 2010-09-13T02:36:37Z biological_process owl:Class GO:0004508 biolink:NamedThing steroid 17-alpha-monooxygenase activity Catalysis of the reaction: a steroid + AH2 + O2 = a 17a-hydroxysteroid + A + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P45017alpha|steroid 17alpha-monooxygenase activity|steroid 17alphahydroxylase/17,20 lyase activity|steroid 17-alpha-hydroxylase activity|steroid 17alpha-hydroxylase activity|steroid 17-alpha-hydroxylase-C17-20 lyase activity|cytochrome p450 XVIIA1 activity|steroid 17-alpha-hydroxylase/17,20 lyase activity|steroid,hydrogen-donor:oxygen oxidoreductase (17alpha-hydroxylating)|cytochrome P450 CYP17|cytochrome P-450 (P-45017alpha,lyase)|17alpha-hydroxylase-C17,20 lyase activity Reactome:R-HSA-193099|Reactome:R-HSA-193072|Reactome:R-HSA-5601843|EC:1.14.14.19|Reactome:R-HSA-9035954|Reactome:R-HSA-9035956|MetaCyc:STEROID-17-ALPHA-MONOOXYGENASE-RXN|Reactome:R-HSA-193068|Reactome:R-HSA-193070 molecular_function owl:Class GO:0061963 biolink:NamedThing regulation of entry into reproductive diapause Any process that modulates the rate or extent of the dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-05T15:02:16Z biological_process owl:Class GO:0010786 biolink:NamedThing clathrin coating of Golgi vesicle, trans-Golgi to endosome targeting The addition of clathrin and adaptor proteins to Golgi membranes during the formation of transport vesicles that will move from the trans-Golgi to the endosome, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004135 biolink:NamedThing amylo-alpha-1,6-glucosidase activity Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic branch linkages in glycogen phosphorylase limit dextrin. Limit dextrin is the highly branched core that remains after exhaustive treatment of glycogen with glycogen phosphorylase. It is formed because these enzymes cannot hydrolyze the (1->6) glycosidic linkages present. tmpzr1t_l9r_go_relaxed.owl amylopectin 1,6-glucosidase activity|dextrin 6-alpha-D-glucosidase activity|dextrin-1,6-glucosidase activity|glycogen phosphorylase-limit dextrin alpha-1,6-glucohydrolase activity|amylo-1,6-glucosidase activity Reactome:R-HSA-71593|EC:3.2.1.33|MetaCyc:3.2.1.33-RXN molecular_function owl:Class GO:2000719 biolink:NamedThing negative regulation of maintenance of mitotic sister chromatid cohesion, centromeric Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl negative regulation of maintenance of centromeric mitotic sister chromatin cohesion|negative regulation of maintenance of mitotic sister chromatin cohesion at centromere|negative regulation of maintenance of sister chromatin cohesion at centromere at mitosis mah 2011-06-03T10:41:14Z biological_process owl:Class GO:0034183 biolink:NamedThing negative regulation of maintenance of mitotic sister chromatid cohesion Any process that decreases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903598 biolink:NamedThing positive regulation of gap junction assembly Any process that activates or increases the frequency, rate or extent of gap junction assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of gap junction assembly|up-regulation of gap junction assembly|activation of gap junction assembly|upregulation of gap junction assembly rl 2014-11-07T18:51:53Z biological_process owl:Class GO:0016999 biolink:NamedThing antibiotic metabolic process The chemical reactions and pathways involving an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms. tmpzr1t_l9r_go_relaxed.owl antibiotic metabolism biological_process owl:Class GO:1905581 biolink:NamedThing positive regulation of low-density lipoprotein particle clearance Any process that activates or increases the frequency, rate or extent of low-density lipoprotein particle clearance. tmpzr1t_l9r_go_relaxed.owl up-regulation of low-density lipoprotein particle clearance|upregulation of low-density lipoprotein particle clearance|up-regulation of LDL clearance|up regulation of low-density lipoprotein particle clearance|up regulation of LDL clearance|positive regulation of LDL clearance|upregulation of LDL clearance|activation of LDL clearance|activation of low-density lipoprotein particle clearance nc 2016-10-19T14:39:15Z biological_process owl:Class GO:0010986 biolink:NamedThing positive regulation of lipoprotein particle clearance Any process that increases the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:08:19Z biological_process owl:Class GO:0019105 biolink:NamedThing N-palmitoyltransferase activity Catalysis of the transfer of a palmitoyl group to a nitrogen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033106 biolink:NamedThing cis-Golgi network membrane The lipid bilayer surrounding any of the compartments that make up the cis-Golgi network. tmpzr1t_l9r_go_relaxed.owl cis Golgi network membrane|Golgi cis face membrane cellular_component owl:Class GO:2000155 biolink:NamedThing positive regulation of cilium-dependent cell motility Any process that activates or increases the frequency, rate or extent of cilium-dependent cell motility. tmpzr1t_l9r_go_relaxed.owl positive regulation of ciliary cell motility mah 2010-10-04T12:41:05Z biological_process owl:Class GO:2000147 biolink:NamedThing positive regulation of cell motility Any process that activates or increases the frequency, rate or extent of cell motility. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell movement|positive regulation of cell locomotion|positive regulation of movement of a cell mah 2010-10-01T09:41:30Z biological_process owl:Class GO:0047930 biolink:NamedThing glucosaminate ammonia-lyase activity Catalysis of the reaction: D-glucosaminate = 2-dehydro-3-deoxy-D-gluconate + NH3. tmpzr1t_l9r_go_relaxed.owl acetylenemonocarboxylic acid hydrase activity|D-glucosaminate ammonia-lyase (isomerizing; 2-dehydro-3-deoxy-D-gluconate-forming)|D-glucosaminate ammonia-lyase activity|2-amino-2-deoxy-D-gluconate hydro-lyase (deaminating) activity|2-amino-2-deoxy-D-gluconate ammonia-lyase activity|glucosaminic dehydrase activity|D-glucosaminate dehydratase activity|aminodeoxygluconate ammonia-lyase activity|D-glucosaminic acid dehydrase activity|aminodeoxygluconate dehydratase activity MetaCyc:4.3.1.21-RXN|EC:4.3.1.9|RHEA:12488 Note that this function was EC:4.3.1.21. GO:0050443 molecular_function owl:Class GO:0046014 biolink:NamedThing negative regulation of T cell homeostatic proliferation Any process that stops, prevents or reduces the rate or extent of resting T cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of T cell homeostatic proliferation|downregulation of T cell homeostatic proliferation|negative regulation of resting T cell proliferation|negative regulation of T lymphocyte homeostatic proliferation|negative regulation of T-lymphocyte homeostatic proliferation|down-regulation of T cell homeostatic proliferation|inhibition of T cell homeostatic proliferation|negative regulation of T-cell homeostatic proliferation biological_process owl:Class GO:0017053 biolink:NamedThing transcription repressor complex A protein complex that possesses activity that prevents or downregulates transcription. tmpzr1t_l9r_go_relaxed.owl transcription factor inhibitor complex|nuclear transcriptional repressor complex|cytoplasmic transcriptional repressor complex|transcriptional repressor complex tb 2014-05-09T13:23:51Z GO:0090569|GO:0090568 cellular_component owl:Class GO:0005353 biolink:NamedThing fructose transmembrane transporter activity Enables the transfer of fructose from one side of a membrane to the other. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey. tmpzr1t_l9r_go_relaxed.owl fructose permease activity|fructose porter activity Reactome:R-HSA-189222 GO:0015585|GO:0019192 molecular_function owl:Class GO:0044111 biolink:NamedThing formation of structure involved in a symbiotic process The progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl development involved in symbiotic interaction|development on or near surface of other organism involved in symbiotic interaction|development of symbiont involved in interaction with host|development during symbiotic interaction|development on or near surface of other organism during symbiotic interaction|development of symbiont during interaction with host https://github.com/geneontology/go-ontology/issues/20305 jl 2009-07-30T02:26:46Z GO:0044152|GO:0044115 biological_process owl:Class GO:0046872 biolink:NamedThing metal ion binding Binding to a metal ion. tmpzr1t_l9r_go_relaxed.owl heavy metal binding|metal binding molecular_function owl:Class GO:1904610 biolink:NamedThing response to 3,3',4,4',5-pentachlorobiphenyl Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3,3',4,4',5-pentachlorobiphenyl stimulus. tmpzr1t_l9r_go_relaxed.owl response to PCB 126 sl 2015-08-27T18:52:49Z biological_process owl:Class GO:0006550 biolink:NamedThing isoleucine catabolic process The chemical reactions and pathways resulting in the breakdown of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl isoleucine breakdown|isoleucine degradation|isoleucine catabolism MetaCyc:ILEUDEG-PWY biological_process owl:Class GO:0006549 biolink:NamedThing isoleucine metabolic process The chemical reactions and pathways involving isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl isoleucine metabolism biological_process owl:Class GO:0046476 biolink:NamedThing glycosylceramide biosynthetic process The chemical reactions and pathways resulting in the formation of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. tmpzr1t_l9r_go_relaxed.owl glycosylceramide synthesis|glycosylceramide formation|glycosylceramide biosynthesis|glycosylceramide anabolism biological_process owl:Class GO:1902553 biolink:NamedThing positive regulation of catalase activity Any process that activates or increases the frequency, rate or extent of catalase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of catalase-peroxidase activity|activation of optidase activity|activation of haem catalase activity|up regulation of catalase reaction|up regulation of caperase activity|activation of catalase reaction|up-regulation of heme catalase activity|upregulation of optidase activity|positive regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|upregulation of catalase reaction|positive regulation of caperase activity|up-regulation of optidase activity|up-regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|activation of manganese catalase activity|upregulation of haem catalase activity|positive regulation of heme catalase activity|up regulation of optidase activity|activation of heme catalase activity|activation of CAT|activation of caperase activity|up-regulation of equilase activity|up-regulation of manganese catalase activity|positive regulation of catalase-peroxidase activity|up regulation of haem catalase activity|up regulation of heme catalase activity|activation of equilase activity|up regulation of manganese catalase activity|activation of catalase activity|upregulation of heme catalase activity|upregulation of catalase activity|up-regulation of CAT|upregulation of CAT|up regulation of equilase activity|up regulation of CAT|positive regulation of catalase reaction|positive regulation of optidase activity|upregulation of catalase-peroxidase activity|activation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|up-regulation of catalase activity|positive regulation of equilase activity|upregulation of manganese catalase activity|up-regulation of catalase-peroxidase activity|upregulation of equilase activity|up-regulation of catalase reaction|activation of catalase-peroxidase activity|up-regulation of bacterial catalase-peroxidase activity|up-regulation of haem catalase activity|activation of bacterial catalase-peroxidase activity|positive regulation of manganese catalase activity|up regulation of catalase activity|upregulation of bacterial catalase-peroxidase activity|up regulation of bacterial catalase-peroxidase activity|positive regulation of CAT|positive regulation of haem catalase activity|up regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|up-regulation of caperase activity|positive regulation of bacterial catalase-peroxidase activity|upregulation of caperase activity|upregulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity tb 2013-12-04T21:56:03Z biological_process owl:Class GO:1902551 biolink:NamedThing regulation of catalase activity Any process that modulates the frequency, rate or extent of catalase activity. tmpzr1t_l9r_go_relaxed.owl regulation of CAT|regulation of equilase activity|regulation of heme catalase activity|regulation of haem catalase activity|regulation of optidase activity|regulation of caperase activity|regulation of catalase-peroxidase activity|regulation of manganese catalase activity|regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|regulation of catalase reaction|regulation of bacterial catalase-peroxidase activity tb 2013-12-04T21:55:46Z biological_process owl:Class GO:0061633 biolink:NamedThing transport-coupled glycolytic process through glucose-6-phosphate The chemical reactions and pathways resulting in the breakdown of glucose into pyruvate, in which the glucose is converted to glucose-6-phosphate intermediate coupled to transmembrane transport. tmpzr1t_l9r_go_relaxed.owl dph 2014-06-19T09:12:37Z biological_process owl:Class GO:1901756 biolink:NamedThing butirosin metabolic process The chemical reactions and pathways involving butirosin. tmpzr1t_l9r_go_relaxed.owl butirosin metabolism yaf 2013-01-14T11:36:18Z biological_process owl:Class GO:0034298 biolink:NamedThing arthrospore formation The formation of conidia by the conversion of a pre-existing hypha. An arthrospore is produced by the last cell on a hypha breaking off and dispersing. Usually the walls thicken and the cell(s) separates before swelling of each spore. Sometimes further septa form in each cell prior to disarticulation. tmpzr1t_l9r_go_relaxed.owl arthroconidium formation biological_process owl:Class GO:0046961 biolink:NamedThing proton-transporting ATPase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl hydrogen ion translocating F-type ATPase activity|ATP synthase activity|F(1)-ATPase activity|hydrogen ion translocating V-type ATPase activity|ATP phosphohydrolase (H+-transporting) activity|hydrogen ion transporting two-sector ATPase activity|F0F1-ATPase|FoF1-ATPase|hydrogen ion translocating A-type ATPase activity|F(o)F(1)-ATPase activity|F1-ATPase|F(0)F(1)-ATPase activity|hydrogen ion transporting ATPase activity, rotational mechanism|H+-transporting ATPase activity|chloroplast ATPase activity|H(+)-transporting ATP synthase activity|mitochondrial ATPase activity RHEA:57721 molecular_function owl:Class GO:0044769 biolink:NamedThing ATPase activity, coupled to transmembrane movement of ions, rotational mechanism Enables the transfer of ions from one side of a membrane to the other according to the reaction: ATP + H2O + ion(in) = ADP + phosphate + ion(out), by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl jl 2013-02-20T13:41:38Z molecular_function owl:Class GO:0060401 biolink:NamedThing cytosolic calcium ion transport The directed movement of calcium ions (Ca2+) into, out of or within the cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006480 biolink:NamedThing N-terminal protein amino acid methylation The methylation of the N-terminal amino acid of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005228 biolink:NamedThing intracellular sodium activated potassium channel activity Enables the transmembrane transfer of potassium by a channel that opens in response to stimulus by a sodium ion or ions. Transport by a channel involves facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. Sodium activated potassium channels have distinctive properties, including a large single channel conductance, subconductance states, and a block of single channel currents at positive potentials, similar to inward rectification. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035925 biolink:NamedThing mRNA 3'-UTR AU-rich region binding Binding to a region containing frequent adenine and uridine bases within the 3' untranslated region of a mRNA molecule or in pre-mRNA intron. The ARE-binding element consensus is UUAUUUAUU. ARE-binding proteins control the stability and/or translation of mRNAs. tmpzr1t_l9r_go_relaxed.owl ARE binding|mRNA 3'-UTR adenylate/uridylate-rich element binding|AU-rich element binding|adenylate/uridylate-rich element binding https://github.com/geneontology/go-ontology/issues/16842 bf 2011-07-19T09:30:18Z GO:0017091 molecular_function owl:Class GO:1901022 biolink:NamedThing 4-hydroxyphenylacetate metabolic process The chemical reactions and pathways involving 4-hydroxyphenylacetate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetate metabolism yaf 2012-06-18T02:31:37Z biological_process owl:Class GO:0090515 biolink:NamedThing L-glutamate transmembrane import into vacuole The directed movement of L-glutamate into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-14T11:25:52Z biological_process owl:Class GO:0015813 biolink:NamedThing L-glutamate transmembrane transport The directed movement of L-glutamate across a membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrial aspartate/glutamate transport|L-glutamate transport GO:0089711 biological_process owl:Class GO:0044721 biolink:NamedThing protein import into peroxisome matrix, substrate release The process by which the cargo protein is released into the peroxisomal matrix, following translocation across the membrane. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-18T14:07:40Z biological_process owl:Class GO:0106057 biolink:NamedThing negative regulation of calcineurin-mediated signaling Any process that stops, prevents or reduces the frequency, rate or extent of calcineurin-mediated signalling. tmpzr1t_l9r_go_relaxed.owl hjd 2017-09-18T16:50:11Z biological_process owl:Class GO:0030960 biolink:NamedThing peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine The modification of two peptidyl-tyrosines to form a 3'-(O4'-L-tyrosinyl)-L-tyrosine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0368 biological_process owl:Class GO:0044871 biolink:NamedThing negative regulation by host of viral glycoprotein metabolic process A process in which a host organism stops, prevents or reduces the frequency, rate or extent of viral glycoprotein metabolic process. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T14:28:48Z biological_process owl:Class GO:0035155 biolink:NamedThing negative regulation of terminal cell fate specification, open tracheal system Any process that restricts, stops or prevents a cell from adopting a terminal cell fate in an open tracheal system. Once the terminal and fusion fates have been correctly induced, inhibitory feedback loops prevent the remaining branch cells from assuming similar fates. tmpzr1t_l9r_go_relaxed.owl down regulation of terminal cell fate specification|down-regulation of terminal cell fate specification|inhibition of terminal cell fate specification|downregulation of terminal cell fate specification|negative regulation of terminal cell fate specification biological_process owl:Class GO:0060016 biolink:NamedThing granulosa cell development The process whose specific outcome is the progression of a granulosa cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a granulosa cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047475 biolink:NamedThing phenylacetate-CoA ligase activity Catalysis of the reaction: ATP + CoA + phenylacetate = AMP + diphosphate + H(+) + phenylacetyl-CoA. tmpzr1t_l9r_go_relaxed.owl PA-CoA ligase activity|phenacyl coenzyme A synthetase activity|phenylacetyl-CoA ligase activity|phenylacetyl-CoA ligase (AMP-forming)|phenylacetate:CoA ligase (AMP-forming) EC:6.2.1.30|KEGG_REACTION:R02539|MetaCyc:PHENYLACETATE--COA-LIGASE-RXN|RHEA:20956 molecular_function owl:Class GO:1900817 biolink:NamedThing ochratoxin A catabolic process The chemical reactions and pathways resulting in the breakdown of ochratoxin A. tmpzr1t_l9r_go_relaxed.owl ochratoxin A degradation|ochratoxin A breakdown|ochratoxin A catabolism di 2012-06-04T10:13:26Z biological_process owl:Class GO:1901569 biolink:NamedThing fatty acid derivative catabolic process The chemical reactions and pathways resulting in the breakdown of fatty acid derivative. tmpzr1t_l9r_go_relaxed.owl fatty acid derivative breakdown|fatty acid derivative degradation|fatty acid derivative catabolism pr 2012-11-04T17:13:40Z biological_process owl:Class GO:0021600 biolink:NamedThing abducens nerve structural organization The process that contributes to the act of creating the structural organization of the abducens nerve. This process pertains to the physical shaping of a rudimentary structure. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye. tmpzr1t_l9r_go_relaxed.owl abducens nerve structural organisation|CN VI structural organization biological_process owl:Class GO:0002210 biolink:NamedThing behavioral response to wounding A behavioral response resulting from wounding. tmpzr1t_l9r_go_relaxed.owl behavioural response to wounding biological_process owl:Class GO:0018007 biolink:NamedThing N-terminal peptidyl-glycine N-glucuronylation The glucuronylation of the N-terminal glycine of proteins to form the derivative D-glucuronyl-N-glycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0058 biological_process owl:Class GO:0018006 biolink:NamedThing N-terminal protein amino acid glucuronylation The glucuronylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050214 biolink:NamedThing progesterone monooxygenase activity Catalysis of the reaction: AH(2) + O(2) + progesterone = A + H(2)O + testosterone acetate. tmpzr1t_l9r_go_relaxed.owl progesterone,hydrogen-donor:oxygen oxidoreductase (hydroxylating)|progesterone hydroxylase activity KEGG_REACTION:R02212|RHEA:11984|MetaCyc:PROGESTERONE-MONOOXYGENASE-RXN|EC:1.14.99.4 molecular_function owl:Class GO:0046658 biolink:NamedThing anchored component of plasma membrane The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl anchored to plasma membrane|plasma membrane, GPI-anchored cellular_component owl:Class GO:0031226 biolink:NamedThing intrinsic component of plasma membrane The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to plasma membrane cellular_component owl:Class GO:0042186 biolink:NamedThing o-xylene catabolic process The chemical reactions and pathways resulting in the breakdown of o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl ortho-xylene catabolism|o-xylene degradation|o-xylene catabolism|o-xylene breakdown|ortho-xylene catabolic process biological_process owl:Class GO:0018950 biolink:NamedThing o-xylene metabolic process The chemical reactions and pathways involving o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl ortho-xylene metabolism|ortho-xylene metabolic process|o-xylene metabolism UM-BBD_pathwayID:oxy biological_process owl:Class GO:0019401 biolink:NamedThing alditol biosynthetic process The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. tmpzr1t_l9r_go_relaxed.owl alditol formation|alditol anabolism|alditol biosynthesis|alditol synthesis biological_process owl:Class GO:0006000 biolink:NamedThing fructose metabolic process The chemical reactions and pathways involving fructose, the ketohexose arabino-2-hexulose. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey. tmpzr1t_l9r_go_relaxed.owl fructose metabolism Wikipedia:Fructose biological_process owl:Class GO:0047276 biolink:NamedThing N-acetyllactosaminide 3-alpha-galactosyltransferase activity Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-Gal:N-acetyllactosaminide alpha-1,3-D-galactosyltransferase activity|UDP-galactose-acetyllactosamine alpha-D-galactosyltransferase activity|alpha-galactosyltransferase activity|UDP-Gal:Gal-beta-1->4GlcNAc-R alpha-1->3-galactosyltransferase activity|uridine diphosphogalactose-acetyllactosamine alpha-1->3-galactosyltransferase activity|N-acetyllactosaminide alpha-1,3-galactosyltransferase activity|UDP-Gal:N-acetyllactosaminide alpha(1,3)-galactosyltransferase activity|UDP-Gal:Galbeta1->4GlcNAc-R alpha1->3-galactosyltransferase activity|beta-galactosyl-N-acetylglucosaminylglycopeptide alpha-1,3-galactosyltransferase activity|uridine diphosphogalactose-galactosylacetylglucosaminylgalactosyl-glucosylceramide galactosyltransferase activity|UDP-Gal:N-acetyllactosaminide alpha-(1,3)-galactosyltransferase activity|glucosaminylglycopeptide alpha-1,3-galactosyltransferase activity|uridine diphosphogalactose-acetyllactosamine alpha1->3-galactosyltransferase activity|UDPgalactose:beta-D-galactosyl-beta-1,4-N-acetyl-D-glucosaminyl-glycopeptide alpha-1,3-D-galactosyltransferase activity|uridine diphosphogalactose-acetyllactosamine galactosyltransferase activity|UDP-Gal:beta-D-Gal(1,4)-D-GlcNAc alpha-(1,3)-galactosyltransferase activity|uridine diphosphogalactose-galactosylacetylglucosaminylgalactosylglucosylceramide galactosyltransferase activity|UDP-galactose:N-acetyllactosaminide 3-alpha-D-galactosyltransferase activity|beta-D-galactosyl-N-acetylglucosaminylglycopeptide alpha-1,3-galactosyltransferase activity|UDP-Gal:beta-D-Gal(1,4)-D-GlcNAc alpha(1,3)-galactosyltransferase activity MetaCyc:2.4.1.151-RXN|RHEA:13013|EC:2.4.1.87 GO:0003946 molecular_function owl:Class GO:1900428 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:53:33Z biological_process owl:Class GO:0038150 biolink:NamedThing C-C chemokine receptor CCR2 signaling pathway A series of molecular signals initiated by a the C-C chemokine type 2 receptor (CCR2) on the surface of a cell binding to one of it's physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl C-C chemokine receptor type 2 signaling pathway bf 2012-05-11T11:41:02Z biological_process owl:Class GO:0019877 biolink:NamedThing diaminopimelate biosynthetic process The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl diaminopimelate synthesis|diaminopimelate biosynthesis|diaminopimelate anabolism|diaminopimelate formation biological_process owl:Class GO:0043650 biolink:NamedThing dicarboxylic acid biosynthetic process The chemical reactions and pathways resulting in the formation of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl dicarboxylic acid anabolism|dicarboxylic acid formation|dicarboxylate biosynthesis|dicarboxylate biosynthetic process|dicarboxylic acid synthesis|dicarboxylic acid biosynthesis biological_process owl:Class GO:1905348 biolink:NamedThing endonuclease complex A protein complex which is capable of endonuclease activity. tmpzr1t_l9r_go_relaxed.owl An example of this is MUS81 in human (Q96NY9) in PMID:18413719 (inferred from direct assay). bhm 2016-08-03T12:27:00Z cellular_component owl:Class GO:0043612 biolink:NamedThing isoprene biosynthetic process The chemical reactions and pathways resulting in the formation of isoprene, C5H8. tmpzr1t_l9r_go_relaxed.owl 2-methyl-1,3-butadiene biosynthesis|hemiterpene biosynthetic process|2-methyl-1,3-butadiene biosynthetic process|hemiterpene biosynthesis biological_process owl:Class GO:0042653 biolink:NamedThing mitochondrial respiratory chain complex I, membrane segment The mitochondrial membrane segment of respiratory chain complex I. Respiratory chain complex I is an enzyme of the respiratory chain, consisting of at least 34 polypeptide chains. The electrons of NADH enter the chain at this complex. The complete complex is L-shaped, with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. tmpzr1t_l9r_go_relaxed.owl NADH-Q oxidoreductase complex, membrane segment cellular_component owl:Class GO:0033387 biolink:NamedThing putrescine biosynthetic process from ornithine The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane by decarboxylation of ornithine. tmpzr1t_l9r_go_relaxed.owl putrescine synthesis from ornithine|putrescine anabolism from ornithine|putrescine formation from ornithine|putrescine biosynthesis from ornithine biological_process owl:Class GO:1902122 biolink:NamedThing chenodeoxycholic acid binding Binding to chenodeoxycholic acid. tmpzr1t_l9r_go_relaxed.owl CDCA binding bf 2013-05-16T09:17:19Z molecular_function owl:Class GO:0014064 biolink:NamedThing positive regulation of serotonin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of serotonin. tmpzr1t_l9r_go_relaxed.owl stimulation of serotonin secretion|up-regulation of serotonin secretion|positive regulation of serotonin release|activation of serotonin secretion|up regulation of serotonin secretion|upregulation of serotonin secretion biological_process owl:Class GO:0099641 biolink:NamedThing anterograde axonal protein transport The directed movement of proteins along microtubules from the cell body toward the cell periphery in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl anterograde axon cargo transport biological_process owl:Class GO:0103055 biolink:NamedThing gibberelli A15, 2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A15 + 2-oxoglutarate + O2 <=> gibberellin A24 + succinate + carbon dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:60780|MetaCyc:RXN1F-163 molecular_function owl:Class GO:0010804 biolink:NamedThing negative regulation of tumor necrosis factor-mediated signaling pathway Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of TNF signaling|negative regulation of tumor necrosis factor-mediated signalling pathway|negative regulation of TNF-mediated signaling pathway biological_process owl:Class GO:2000333 biolink:NamedThing negative regulation of blood microparticle formation Any process that stops, prevents or reduces the frequency, rate or extent of blood microparticle formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of microparticle release|negative regulation of microparticle generation mah 2011-01-31T11:18:18Z biological_process owl:Class GO:0071629 biolink:NamedThing cytoplasm protein quality control by the ubiquitin-proteasome system The chemical reactions and pathways resulting in the breakdown of misfolded proteins in the cytoplasm, which are targeted to cytoplasmic proteasomes for degradation. tmpzr1t_l9r_go_relaxed.owl cytoplasm-associated proteasomal ubiquitin-dependent protein catabolism|ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome|cytoplasm-associated proteasomal ubiquitin-dependent protein degradation|cytoplasm-associated proteasomal ubiquitin-dependent protein breakdown See also the biological process terms 'unfolded protein response ; GO:0030968' and 'retrograde protein transport, ER to cytosol ; GO:0030970'. mah 2010-02-11T03:06:57Z biological_process owl:Class GO:0001504 biolink:NamedThing neurotransmitter uptake The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl neurotransmitter import into glial cell|neurotransmitter import|neurotransmitter recycling|neurotransmitter import into neuron biological_process owl:Class GO:0106109 biolink:NamedThing positive regulation of (R)-mevalonic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of (R)-mevalonic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-03-27T14:20:47Z biological_process owl:Class GO:0051035 biolink:NamedThing DNA transmembrane transporter activity Enables the transfer of DNA, deoxyribonucleic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099559 biolink:NamedThing maintenance of alignment of postsynaptic density and presynaptic active zone The process by which alignment between postsynaptic density and presynaptic active zone is maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047970 biolink:NamedThing guanidinoacetase activity Catalysis of the reaction: guanidinoacetate + H(2)O = glycine + urea. tmpzr1t_l9r_go_relaxed.owl glycocyaminase activity|guanidinoacetate amidinohydrolase activity KEGG_REACTION:R00775|RHEA:23268|EC:3.5.3.2|MetaCyc:GUANIDINOACETASE-RXN molecular_function owl:Class GO:0048719 biolink:NamedThing epistomal sclerite morphogenesis The process in which the anatomical structures of the epistomal sclerite are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018783 biolink:NamedThing deisopropyldeethylatrazine hydrolase activity Catalysis of the reaction: deisopropyldeethylatrazine + H2O = 2-chloro-4-hydroxy-6-amino-1,3,5-triazine + NH3. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016518 biolink:NamedThing interleukin-14 receptor activity Combining with interleukin-14 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-14 receptor activity|IL-14R molecular_function owl:Class GO:0046028 biolink:NamedThing electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity Enables the directed movement of electrons from the cytochrome b6/f complex of photosystem II. tmpzr1t_l9r_go_relaxed.owl plastocyanin molecular_function owl:Class GO:0051596 biolink:NamedThing methylglyoxal catabolic process The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. tmpzr1t_l9r_go_relaxed.owl methylglyoxal breakdown|methylglyoxal catabolism|methylglyoxal degradation MetaCyc:METHGLYUT-PWY|MetaCyc:Methylglyoxal-Detoxification biological_process owl:Class GO:0009438 biolink:NamedThing methylglyoxal metabolic process The chemical reactions and pathways involving methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. tmpzr1t_l9r_go_relaxed.owl methylglyoxal pathway|methylglyoxal metabolism|methylglyoxal bypass MetaCyc:METHGLYUT-PWY biological_process owl:Class GO:0002129 biolink:NamedThing wobble position guanine ribose methylation The process in which the ribose of guanosine at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the 2'-O position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002938 biolink:NamedThing tRNA guanine ribose methylation The process whereby a guanosine residue in a tRNA is methylated on the 2'-hydroxyl group of the ribose moiety. tmpzr1t_l9r_go_relaxed.owl hjd 2012-11-02T15:55:55Z biological_process owl:Class GO:0060700 biolink:NamedThing regulation of ribonuclease activity Any process that modulates the rate, frequency, or extent of ribonuclease activity, catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:45:46Z biological_process owl:Class GO:0071088 biolink:NamedThing alpha5-beta1 integrin-tissue transglutaminase complex A protein complex that consists of an alpha5-beta1 integrin complex bound to tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-TGM2 complex mah 2009-11-06T04:45:47Z cellular_component owl:Class GO:0090034 biolink:NamedThing regulation of chaperone-mediated protein complex assembly Any process that modulates the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:12:37Z biological_process owl:Class GO:0015190 biolink:NamedThing L-leucine transmembrane transporter activity Enables the transfer of L-leucine from one side of a membrane to the other. L-leucine is 2-amino-4-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl L-leucine transporter activity|leucine/isoleucine/valine porter activity|leucine/valine/isoleucine permease activity molecular_function owl:Class GO:1904309 biolink:NamedThing response to cordycepin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cordycepin stimulus. tmpzr1t_l9r_go_relaxed.owl response to 3'-deoxyadenosine sl 2015-06-10T17:10:29Z biological_process owl:Class GO:0010262 biolink:NamedThing somatic embryogenesis Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031099 biolink:NamedThing regeneration The regrowth of a lost or destroyed body part, such as an organ or tissue. This process may occur via renewal, repair, and/or growth alone (i.e. increase in size or mass). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Regeneration_(biology) biological_process owl:Class GO:0015243 biolink:NamedThing cycloheximide transmembrane transporter activity Enables the transfer of cycloheximide from one side of a membrane to the other. Cycloheximide is an antibiotic produced by Streptomyces which interferes with protein synthesis in eukaryotes. tmpzr1t_l9r_go_relaxed.owl cycloheximide transporter activity molecular_function owl:Class GO:1905239 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in osteoblast differentiation Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway involved in osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation rph 2016-06-08T10:26:33Z biological_process owl:Class GO:0019698 biolink:NamedThing D-galacturonate catabolic process The chemical reactions and pathways resulting in the breakdown of D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. tmpzr1t_l9r_go_relaxed.owl D-galacturonate breakdown|D-galacturonate degradation|D-galacturonate catabolism MetaCyc:GALACTUROCAT-PWY biological_process owl:Class GO:0035015 biolink:NamedThing elongation of arista core The increase in length of the aristal core. The arista is the terminal segment of the antenna and consists of a central core and a series of lateral extensions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044282 biolink:NamedThing small molecule catabolic process The chemical reactions and pathways resulting in the breakdown of small molecules, any low molecular weight, monomeric, non-encoded molecule. tmpzr1t_l9r_go_relaxed.owl small molecule catabolism Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. jl 2010-01-26T12:06:10Z biological_process owl:Class GO:0044281 biolink:NamedThing small molecule metabolic process The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule. tmpzr1t_l9r_go_relaxed.owl small molecule metabolism Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. jl 2010-01-26T12:05:20Z biological_process owl:Class GO:0051688 biolink:NamedThing maintenance of plastid location Any process in which a plastid is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of plastid localization biological_process owl:Class GO:0051657 biolink:NamedThing maintenance of organelle location Any process in which an organelle is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of organelle localization biological_process owl:Class GO:1900916 biolink:NamedThing positive regulation of octadecene biosynthetic process Any process that activates or increases the frequency, rate or extent of octadecene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of octadecene anabolism|up-regulation of 1-octadecene biosynthetic process|upregulation of octadecene biosynthesis|positive regulation of octadecene anabolism|upregulation of octadecene formation|up-regulation of octadecene biosynthesis|up regulation of octadecene synthesis|up regulation of octadecene biosynthesis|activation of octadecene synthesis|activation of octadecene biosynthetic process|up-regulation of octadecene formation|up regulation of 1-octadecene biosynthetic process|positive regulation of 1-octadecene biosynthetic process|positive regulation of octadecene biosynthesis|positive regulation of octadecene formation|up regulation of octadecene anabolism|up-regulation of octadecene synthesis|up-regulation of octadecene anabolism|up regulation of octadecene biosynthetic process|upregulation of 1-octadecene biosynthetic process|up regulation of octadecene formation|activation of octadecene formation|activation of 1-octadecene biosynthetic process|positive regulation of octadecene synthesis|upregulation of octadecene synthesis|upregulation of octadecene biosynthetic process|up-regulation of octadecene biosynthetic process|activation of octadecene biosynthesis|activation of octadecene anabolism tt 2012-06-13T04:24:55Z biological_process owl:Class GO:1900919 biolink:NamedThing positive regulation of octadecene metabolic process Any process that activates or increases the frequency, rate or extent of octadecene metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of octadecene metabolic process|activation of octadecene metabolism|up regulation of octadecene metabolic process|up-regulation of octadecene metabolism|activation of octadecene metabolic process|positive regulation of octadecene metabolism|upregulation of octadecene metabolism|up regulation of octadecene metabolism|upregulation of octadecene metabolic process tt 2012-06-13T04:26:42Z biological_process owl:Class GO:0047150 biolink:NamedThing betaine-homocysteine S-methyltransferase activity Catalysis of the reaction: L-homocysteine + betaine = N,N-dimethylglycine + L-methionine. tmpzr1t_l9r_go_relaxed.owl betaine-homocysteine methyltransferase activity|trimethylammonioacetate:L-homocysteine S-methyltransferase activity|betaine-homocysteine transmethylase activity EC:2.1.1.5|MetaCyc:2.1.1.5-RXN|Reactome:R-HSA-1614654|KEGG_REACTION:R02821|RHEA:22336 molecular_function owl:Class GO:0090187 biolink:NamedThing positive regulation of pancreatic juice secretion Any process that increases the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:03:24Z biological_process owl:Class GO:0043143 biolink:NamedThing regulation of translation by machinery localization Any process in which proteins and protein complexes involved in translation are transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of translational protein localization|regulation of translation by machinery localisation|establishment and maintenance of translational machinery localization|translational protein localization|translational machinery localization biological_process owl:Class GO:1901540 biolink:NamedThing ent-pimara-8(14),15-diene catabolic process The chemical reactions and pathways resulting in the breakdown of ent-pimara-8(14),15-diene. tmpzr1t_l9r_go_relaxed.owl ent-pimara-8(14),15-diene catabolism|ent-pimara-8(14),15-diene degradation|ent-pimara-8(14),15-diene breakdown di 2012-10-25T15:38:17Z biological_process owl:Class GO:1901539 biolink:NamedThing ent-pimara-8(14),15-diene metabolic process The chemical reactions and pathways involving ent-pimara-8(14),15-diene. tmpzr1t_l9r_go_relaxed.owl ent-pimara-8(14),15-diene metabolism di 2012-10-25T15:38:13Z biological_process owl:Class GO:0090021 biolink:NamedThing positive regulation of posterior neural plate formation by Wnt signaling pathway The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and increasing the rate or extent of posterior neural plate formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of posterior neural plate formation by Wnt-activated signaling pathway|positive regulation of posterior neural plate formation by Wnt receptor signaling pathway|positive regulation of posterior neural plate formation by Wnt receptor signalling pathway tb 2009-07-29T11:44:13Z biological_process owl:Class GO:0006756 biolink:NamedThing AMP phosphorylation The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046033 biolink:NamedThing AMP metabolic process The chemical reactions and pathways involving AMP, adenosine monophosphate. tmpzr1t_l9r_go_relaxed.owl adenylate forming enzyme activity|AMP metabolism biological_process owl:Class GO:1990899 biolink:NamedThing meiotic DNA double-strand break resectioning The process following clipping in double-strand break processing of SPO11 induced breaks, where long-tract single-stranded 3'-end DNA is generated from naked (SPO11 has been removed) 5' ends. tmpzr1t_l9r_go_relaxed.owl al 2015-11-10T17:23:07Z biological_process owl:Class GO:0075202 biolink:NamedThing regulation of penetration hypha formation Any process that modulates the frequency, rate or extent of symbiont penetration hypha formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont penetration hypha formation for entry into host https://github.com/geneontology/go-ontology/issues/21121 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0052372 biolink:NamedThing modulation by symbiont of entry into host Any process in which an organism modulates the frequency, rate or extent to which it enters into the host organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of entry into other organism during symbiotic interaction|regulation by organism of entry into other organism during symbiotic interaction|regulation by organism of entry into other organism involved in symbiotic interaction https://github.com/geneontology/go-ontology/issues/19027 GO:0052371 biological_process owl:Class GO:1905855 biolink:NamedThing positive regulation of heparan sulfate binding Any process that activates or increases the frequency, rate or extent of heparan sulfate binding. tmpzr1t_l9r_go_relaxed.owl up regulation of heparan sulfate binding|activation of heparan sulfate binding|upregulation of heparan sulfate binding|up-regulation of heparan sulfate binding bc 2017-01-23T13:25:47Z biological_process owl:Class GO:1905853 biolink:NamedThing regulation of heparan sulfate binding Any process that modulates the frequency, rate or extent of heparan sulfate binding. tmpzr1t_l9r_go_relaxed.owl bc 2017-01-23T13:25:30Z biological_process owl:Class GO:0007134 biolink:NamedThing meiotic telophase I The cell cycle phase which follows anaphase I of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0098764 biolink:NamedThing meiosis I cell cycle phase A meiotic cell cycle phase prior to a during which some part of meiosis I nuclear division or the proceeding cytokinesis occurs. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0044579 biolink:NamedThing butyryl-CoA biosynthetic process from acetyl-CoA The chemical reactions and pathway resulting in the formation of butyryl-CoA, starting from acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA biosynthesis from acetyl-CoA jl 2012-04-19T04:25:07Z biological_process owl:Class GO:0048303 biolink:NamedThing negative regulation of isotype switching to IgG isotypes Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching to IgG isotypes. tmpzr1t_l9r_go_relaxed.owl negative regulation of class switch recombination to IgG isotypes|negative regulation of class switching to IgG isotypes|downregulation of isotype switching to IgG isotypes|down-regulation of isotype switching to IgG isotypes|inhibition of isotype switching to IgG isotypes|negative regulation of isotype switch recombination to IgG isotypes|down regulation of isotype switching to IgG isotypes biological_process owl:Class GO:1902151 biolink:NamedThing regulation of response to DNA integrity checkpoint signaling Any process that modulates the frequency, rate or extent of response to DNA integrity checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of DNA integrity checkpoint effector process|regulation of response to signal involved in DNA integrity checkpoint jl 2013-05-21T15:44:26Z biological_process owl:Class GO:0062189 biolink:NamedThing anandamide 14,15 epoxidase activity Catalysis of the reaction: N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + O2 + reduced [NADPH--hemoprotein reductase] = H(+) + H2O + N-(14,15-epoxy-5Z,8Z,11Z-eicosatrienoyl)-ethanolamine + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:53148 dph 2019-11-26T18:57:55Z molecular_function owl:Class GO:2000268 biolink:NamedThing positive regulation of blood coagulation, intrinsic pathway Any process that activates or increases the frequency, rate or extent of blood coagulation, intrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:45:51Z biological_process owl:Class GO:0070987 biolink:NamedThing error-free translesion synthesis The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions but does not causes an increase in the endogenous mutation level. For S. cerevisiae, RAD30 encodes DNA polymerase eta, which incorporates two adenines. When incorporated across a thymine-thymine dimer, it does not increase the endogenous mutation level. tmpzr1t_l9r_go_relaxed.owl Note that 'error-free' does not mean that literally zero errors occur during DNA synthesis, but that the error rate is low, comparable to that of DNA synthesis during replication. mah 2009-10-29T02:45:42Z biological_process owl:Class GO:0019985 biolink:NamedThing translesion synthesis The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide. tmpzr1t_l9r_go_relaxed.owl bypass DNA synthesis biological_process owl:Class GO:0034519 biolink:NamedThing cytoplasmic RNA cap binding complex A protein complex found in the cytoplasm that binds the 5' cap structure of an mRNA, and typically consists of the cap-binding protein eIF4E, the adaptor protein eIF4G, and a multi-factor complex comprising eIF1, eIF2, eIF3 and eIF5. This complex mediates recruitment of the 40S subunit to mRNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070916 biolink:NamedThing inositol phosphoceramide synthase complex A protein complex that possesses inositol phosphoceramide synthase activity and contains a catalytic subunit and a regulatory subunit (Aur1p and Kei1p, respectively, in Saccharomyces). tmpzr1t_l9r_go_relaxed.owl IPC synthase complex mah 2009-09-10T05:23:21Z cellular_component owl:Class GO:0051335 biolink:NamedThing meiosis II nuclear membrane reassembly The reformation of the nuclear membrane during meiosis II. tmpzr1t_l9r_go_relaxed.owl meiosis II nuclear envelope reassembly https://github.com/geneontology/go-ontology/issues/20636 biological_process owl:Class GO:0097574 biolink:NamedThing lateral part of cell The region of a polarized cell other than its tips or ends (in some cell types, one end may be called the apex and the other the base). For example, in a polarized epithelial cell, the lateral part includes the cell sides which interface adjacent cells. tmpzr1t_l9r_go_relaxed.owl pr 2014-02-26T13:27:27Z cellular_component owl:Class GO:0032625 biolink:NamedThing interleukin-21 production The appearance of interleukin-21 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-21 production|interleukin-21 biosynthetic process|interleukin-21 secretion GO:0072619|GO:0042238 biological_process owl:Class GO:0005140 biolink:NamedThing interleukin-9 receptor binding Binding to an interleukin-9 receptor. tmpzr1t_l9r_go_relaxed.owl IL-9|interleukin-9 receptor ligand molecular_function owl:Class GO:0006546 biolink:NamedThing glycine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. tmpzr1t_l9r_go_relaxed.owl glycine catabolism|glycine breakdown|glycine degradation biological_process owl:Class GO:1901695 biolink:NamedThing tyramine biosynthetic process The chemical reactions and pathways resulting in the formation of tyramine. tmpzr1t_l9r_go_relaxed.owl tyramine formation|tyramine synthesis|tyramine biosynthesis|tyramine anabolism tb 2012-12-12T19:31:35Z biological_process owl:Class GO:0007406 biolink:NamedThing negative regulation of neuroblast proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of the proliferation of neuroblasts. tmpzr1t_l9r_go_relaxed.owl suppression of neuroblast proliferation|down-regulation of neuroblast proliferation|downregulation of neuroblast proliferation|down regulation of neuroblast proliferation|inhibition of neuroblast proliferation biological_process owl:Class GO:0033582 biolink:NamedThing protein galactosylation in cytosol The addition of a galactose unit to a protein amino acid in the cytosol. tmpzr1t_l9r_go_relaxed.owl protein amino acid galactosylation in cytosol biological_process owl:Class GO:0042125 biolink:NamedThing protein galactosylation The addition of a galactose molecule to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid galactosylation biological_process owl:Class GO:0102847 biolink:NamedThing 1-18:3-2-16:2-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:3-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:3-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8309 molecular_function owl:Class GO:0035797 biolink:NamedThing tellurite methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to tellurite [TeO3(2-)]. Methylated derivatives of tellurite include Te(CH3)2 (dimethyltelluride) and Te2(CH3)2 (dimethylditelluride). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine-dependent tellurite methyltransferase activity|tellurite methylase activity|SAM-dependent tellurite methyltransferase activity bf 2011-04-14T01:06:19Z molecular_function owl:Class GO:1902776 biolink:NamedThing 6-sulfoquinovose(1-) metabolic process The chemical reactions and pathways involving 6-sulfoquinovose(1-). tmpzr1t_l9r_go_relaxed.owl 6-sulfoquinovose(1-) metabolism dph 2014-03-18T17:45:56Z biological_process owl:Class GO:0042179 biolink:NamedThing nicotine biosynthetic process The chemical reactions and pathways resulting in the formation of nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine. tmpzr1t_l9r_go_relaxed.owl nicotine biosynthesis|nicotine formation|nicotine anabolism|nicotine synthesis biological_process owl:Class GO:1905647 biolink:NamedThing proline import across plasma membrane The directed movement of proline from outside of a cell into the cytoplasmic compartment. tmpzr1t_l9r_go_relaxed.owl proline import into cell mah 2014-03-31T13:14:04Z GO:1902825 biological_process owl:Class GO:0015766 biolink:NamedThing disaccharide transport The directed movement of disaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Disaccharides are sugars composed of two monosaccharide units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032396 biolink:NamedThing inhibitory MHC class I receptor activity Combining with a MHC class I protein complex to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032393 biolink:NamedThing MHC class I receptor activity Combining with an MHC class I protein complex to initiate a change in cellular activity. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl T cell receptor activity|alpha-beta T cell receptor activity|gamma-delta T cell receptor activity Note that this term is intended for annotation of gene products that act as receptors for MHC class I protein complexes, not for components of the MHC class I protein complexes themselves. molecular_function owl:Class GO:0032140 biolink:NamedThing single adenine insertion binding Binding to a double-stranded DNA region containing a single adenine insertion or a deletion that results in an unpaired adenine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902937 biolink:NamedThing inward rectifier potassium channel complex A protein complex which is capable of inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl An example of this is Kcnj2 in mouse (P35561) in PMID:16834334 (inferred from direct assay). bhm 2014-04-25T15:18:41Z cellular_component owl:Class GO:0035874 biolink:NamedThing cellular response to copper ion starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of copper ions. tmpzr1t_l9r_go_relaxed.owl cellular response to copper starvation bf 2011-05-31T09:28:47Z biological_process owl:Class GO:0031148 biolink:NamedThing DIF-1 biosynthetic process The chemical reactions and pathways resulting in the formation of 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells. tmpzr1t_l9r_go_relaxed.owl 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthetic process|1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one formation|1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one anabolism|1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthesis|DIF-1 biosynthesis|1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one synthesis biological_process owl:Class GO:0019980 biolink:NamedThing interleukin-5 binding Binding to interleukin-5. tmpzr1t_l9r_go_relaxed.owl IL-5 binding molecular_function owl:Class GO:1900774 biolink:NamedThing fumiquinazoline catabolic process The chemical reactions and pathways resulting in the breakdown of fumiquinazoline. tmpzr1t_l9r_go_relaxed.owl fumiquinazolines degradation|fumiquinazoline degradation|fumiquinazolines catabolic process|fumiquinazolines catabolism|fumiquinazoline catabolism|fumiquinazolines breakdown|fumiquinazoline breakdown di 2012-06-04T09:29:46Z biological_process owl:Class GO:0070151 biolink:NamedThing mitochondrial histidyl-tRNA aminoacylation The process of coupling histidine to histidyl-tRNA in a mitochondrion, catalyzed by histidyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006427 biolink:NamedThing histidyl-tRNA aminoacylation The process of coupling histidine to histidyl-tRNA, catalyzed by histidyl-tRNA synthetase. The histidyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3''-OH group of a histidine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043139 biolink:NamedThing 5'-3' DNA helicase activity Unwinding a DNA helix in the 5' to 3' direction, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5' to 3' DNA helicase activity|5' to 3' DNA helicase activity|DNA helicase IV activity Reactome:R-HSA-6782131 GO:0008722|GO:0043141 molecular_function owl:Class GO:0060476 biolink:NamedThing protein localization involved in acrosome reaction The actin-based process in which a protein is transported to, or maintained in, a specific location in the sperm as part of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl protein localisation involved in acrosome reaction biological_process owl:Class GO:0047882 biolink:NamedThing estradiol 6-beta-monooxygenase activity Catalysis of the reaction: AH(2) + estradiol-17beta + O(2) = 6beta-hydroxyestradiol-17beta + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl estradiol 6b-hydroxylase activity|estradiol 6beta-monooxygenase activity|estradiol-17beta,hydrogen-donor:oxygen oxidoreductase (6beta-hydroxylating)|estradiol 6b-monooxygenase activity|estradiol 6beta-hydroxylase activity|estradiol 6-beta-hydroxylase activity MetaCyc:ESTRADIOL-6-BETA-MONOOXYGENASE-RXN|KEGG_REACTION:R03086|EC:1.14.99.11|RHEA:19137 molecular_function owl:Class GO:0033518 biolink:NamedThing myo-inositol hexakisphosphate dephosphorylation The process of removing one or more phosphate group from myo-inositol hexakisphosphate. tmpzr1t_l9r_go_relaxed.owl phytate dephosphorylation MetaCyc:PWY-4702|MetaCyc:PWY-4781 biological_process owl:Class GO:0002839 biolink:NamedThing positive regulation of immune response to tumor cell Any process that activates or increases the frequency, rate, or extent of an immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl up regulation of immune response to tumor cell|activation of immune response to tumor cell|positive regulation of immune response to tumour cell|stimulation of immune response to tumor cell|upregulation of immune response to tumor cell|up-regulation of immune response to tumor cell biological_process owl:Class GO:0071788 biolink:NamedThing endoplasmic reticulum tubular network maintenance The organization process that preserves the endoplasmic reticulum (ER) tubular network in a stable functional or structural state. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl ER tubular network maintenance mah 2010-09-01T01:55:06Z biological_process owl:Class GO:0071786 biolink:NamedThing endoplasmic reticulum tubular network organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that that has membranes with high curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum tubular network organisation|ER tubular network organization|ER tubular network organisation mah 2010-09-01T01:53:51Z biological_process owl:Class GO:2000867 biolink:NamedThing regulation of estrone secretion Any process that modulates the frequency, rate or extent of estrone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of folliculin secretion|regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion bf 2011-07-26T08:50:11Z biological_process owl:Class GO:0009851 biolink:NamedThing auxin biosynthetic process The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl auxin synthesis|auxin anabolism|auxin formation|auxin biosynthesis biological_process owl:Class GO:0042446 biolink:NamedThing hormone biosynthetic process The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. tmpzr1t_l9r_go_relaxed.owl hormone synthesis|hormone anabolism|hormone formation|hormone biosynthesis biological_process owl:Class GO:0032669 biolink:NamedThing regulation of interleukin-25 production Any process that modulates the frequency, rate, or extent of interleukin-25 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-25 production|regulation of interleukin-25 biosynthetic process|regulation of interleukin-25 secretion bc 2019-12-09T16:51:07Z GO:0150148|GO:0045529 biological_process owl:Class GO:0032782 biolink:NamedThing bile acid secretion The regulated release of bile acid, composed of any of a group of steroid carboxylic acids occurring in bile, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050036 biolink:NamedThing L-threonate 3-dehydrogenase activity Catalysis of the reaction: L-threonate + NAD(+) = 3-dehydro-L-threonate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-threonic acid dehydrogenase activity|threonate dehydrogenase activity|L-threonate:NAD+ 3-oxidoreductase activity KEGG_REACTION:R03733|EC:1.1.1.129|MetaCyc:L-THREONATE-3-DEHYDROGENASE-RXN|RHEA:23376 molecular_function owl:Class GO:0050313 biolink:NamedThing sulfur dioxygenase activity Catalysis of the reaction: sulfur + O2 + H2O = sulfite. tmpzr1t_l9r_go_relaxed.owl sulfur oxygenase activity|S-sulfanylglutathione:oxygen oxidoreductase activity|sulfur:oxygen oxidoreductase activity|sulphur dioxygenase activity Reactome:R-HSA-1614605|RHEA:12981|MetaCyc:FESGSHTHIO-RXN|EC:1.13.11.18 molecular_function owl:Class GO:0033515 biolink:NamedThing L-lysine catabolic process using lysine 6-aminotransferase The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including alpha-aminoadipate; in this pathway, L-lysine is converted to 2-aminoadipate-6-semialdehyde by lysine 6-aminotransferase. tmpzr1t_l9r_go_relaxed.owl L-lysine degradation using lysine 6-aminotransferase|L-lysine breakdown using lysine 6-aminotransferase MetaCyc:PWY-5298 biological_process owl:Class GO:0019474 biolink:NamedThing L-lysine catabolic process to acetyl-CoA The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl L-lysine degradation to acetyl-CoA|L-lysine breakdown to acetyl-CoA biological_process owl:Class GO:0002017 biolink:NamedThing regulation of blood volume by renal aldosterone The process in which the hormone aldosterone decreases the rate of diuresis and natriuresis resulting in increased blood volume. tmpzr1t_l9r_go_relaxed.owl renal regulation of blood volume by aldosterone|aldosterone mediated control of body fluids|aldosterone mediated regulation of blood volume biological_process owl:Class GO:0001977 biolink:NamedThing renal system process involved in regulation of blood volume A slow mechanism of blood pressure regulation that responds to changes in pressure resulting from fluid and salt intake by modulating the quantity of blood in the circulatory system. tmpzr1t_l9r_go_relaxed.owl renal regulation of blood volume|renal blood volume control of blood pressure biological_process owl:Class GO:0021545 biolink:NamedThing cranial nerve development The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905449 biolink:NamedThing regulation of Fc-gamma receptor signaling pathway involved in phagocytosis Any process that modulates the frequency, rate or extent of Fc-gamma receptor signaling pathway involved in phagocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of Fc gamma receptor-dependent phagocytosis|regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|regulation of Fcgamma receptor-mediated phagocytosis|regulation of IgG-mediated phagocytosis sl 2016-09-15T19:41:50Z biological_process owl:Class GO:0060368 biolink:NamedThing regulation of Fc receptor mediated stimulatory signaling pathway Any process that modulates the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway. The Fc receptor mediated stimulatory signaling pathway is a series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl regulation of Fc receptor mediated stimulatory signalling pathway biological_process owl:Class GO:0033436 biolink:NamedThing AUG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AUG codon. tmpzr1t_l9r_go_relaxed.owl ATG codon-amino acid adaptor activity|initiator methionine tRNA|methionine tRNA Note that in the standard genetic code, ATG codes for methionine, and is the initiator codon. molecular_function owl:Class GO:0047154 biolink:NamedThing methylmalonyl-CoA carboxytransferase activity Catalysis of the reaction: pyruvate + D-methylmalonyl-CoA = oxaloacetic acid + propionyl-CoA. tmpzr1t_l9r_go_relaxed.owl methylmalonyl coenzyme A carboxyltransferase activity|transcarboxylase activity|oxalacetic transcarboxylase activity|(S)-2-methyl-3-oxopropanoyl-CoA:pyruvate carboxyltransferase activity|methylmalonyl-CoA transcarboxylase activity|(S)-methylmalonyl-CoA:pyruvate carboxytransferase activity|(S)-methylmalonyl-CoA:pyruvate carboxyltransferase activity|methylmalonyl-CoA carboxyltransferase activity|(S)-2-methyl-3-oxopropanoyl-CoA:pyruvate UM-BBD_reactionID:r0923|RHEA:20764|EC:2.1.3.1|MetaCyc:2.1.3.1-RXN molecular_function owl:Class GO:1903526 biolink:NamedThing negative regulation of membrane tubulation Any process that stops, prevents or reduces the frequency, rate or extent of membrane tubulation. tmpzr1t_l9r_go_relaxed.owl inhibition of membrane tubulation|downregulation of plasma membrane tubulation|downregulation of membrane tubulation|down regulation of membrane tubulation|down regulation of plasma membrane tubulation|inhibition of plasma membrane tubulation|negative regulation of plasma membrane tubulation|down-regulation of plasma membrane tubulation|down-regulation of membrane tubulation pm 2014-10-07T12:52:45Z biological_process owl:Class GO:1903043 biolink:NamedThing positive regulation of chondrocyte hypertrophy Any process that activates or increases the frequency, rate or extent of chondrocyte hypertrophy. tmpzr1t_l9r_go_relaxed.owl up-regulation of chondrocyte hypertrophy|upregulation of chondrocyte hypertrophy|up regulation of chondrocyte hypertrophy|activation of chondrocyte hypertrophy mr 2014-05-20T21:23:25Z biological_process owl:Class GO:0061523 biolink:NamedThing cilium disassembly A cellular process that results in the breakdown of a cilium. tmpzr1t_l9r_go_relaxed.owl cilium resorption Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2013-04-18T14:59:59Z biological_process owl:Class GO:0044782 biolink:NamedThing cilium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole. tmpzr1t_l9r_go_relaxed.owl microtubule-based flagellum organization Note that we deem cilium and microtubule-based flagellum to be equivalent. jl 2013-03-27T15:09:58Z biological_process owl:Class GO:1903904 biolink:NamedThing negative regulation of establishment of T cell polarity Any process that stops, prevents or reduces the frequency, rate or extent of establishment of T cell polarity. tmpzr1t_l9r_go_relaxed.owl down-regulation of T-cell polarization|down-regulation of establishment of T lymphocyte polarity|inhibition of establishment of T lymphocyte polarity|downregulation of T lymphocyte polarization|inhibition of establishment of T cell polarity|inhibition of T-cell polarization|down regulation of T cell polarization|negative regulation of T lymphocyte polarization|inhibition of T lymphocyte polarization|down-regulation of establishment of T-lymphocyte polarity|down regulation of T-cell polarization|inhibition of establishment of T-cell polarity|negative regulation of T cell polarization|negative regulation of establishment of T lymphocyte polarity|down regulation of establishment of T-cell polarity|negative regulation of establishment of T-lymphocyte polarity|negative regulation of T-cell polarization|down-regulation of establishment of T cell polarity|down-regulation of establishment of T-cell polarity|down-regulation of T lymphocyte polarization|downregulation of establishment of T cell polarity|down-regulation of T cell polarization|down regulation of establishment of T lymphocyte polarity|downregulation of T-cell polarization|down regulation of establishment of T-lymphocyte polarity|inhibition of T cell polarization|inhibition of establishment of T-lymphocyte polarity|down regulation of T lymphocyte polarization|downregulation of establishment of T-cell polarity|downregulation of T cell polarization|down regulation of establishment of T cell polarity|negative regulation of establishment of T-cell polarity|downregulation of establishment of T lymphocyte polarity|downregulation of establishment of T-lymphocyte polarity als 2015-02-09T10:50:30Z biological_process owl:Class GO:0050868 biolink:NamedThing negative regulation of T cell activation Any process that stops, prevents, or reduces the frequency, rate or extent of T cell activation. tmpzr1t_l9r_go_relaxed.owl down-regulation of T cell activation|negative regulation of T lymphocyte activation|inhibition of T cell activation|negative regulation of T-cell activation|down regulation of T cell activation|negative regulation of T-lymphocyte activation|downregulation of T cell activation biological_process owl:Class GO:1905700 biolink:NamedThing negative regulation of xenobiotic detoxification by transmembrane export across the plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of xenobiotic transmembrane export. A xenobiotic is a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl down-regulation of drug transmembrane export|negative regulation of drug transmembrane export|inhibition of drug transmembrane export|negative regulation of xenobiotic transmembrane export|down regulation of drug transmembrane export|downregulation of drug transmembrane export https://github.com/geneontology/go-ontology/issues/19460|https://github.com/geneontology/go-ontology/issues/17083 sl 2016-11-15T16:46:36Z biological_process owl:Class GO:0050878 biolink:NamedThing regulation of body fluid levels Any process that modulates the levels of body fluids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035899 biolink:NamedThing negative regulation of blood coagulation in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of blood coagulation in another organism. Blood coagulation is the sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot. tmpzr1t_l9r_go_relaxed.owl down-regulation of blood coagulation in other organism|suppression of blood coagulation in other organism|negative regulation of blood clotting in other organism|downregulation of blood coagulation in other organism|inhibition of blood coagulation in other organism bf 2011-06-22T09:17:54Z biological_process owl:Class GO:0072726 biolink:NamedThing response to CCCP Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a CCCP stimulus. tmpzr1t_l9r_go_relaxed.owl response to carbonyl cyanide m-chlorophenyl hydrazone mah 2012-05-31T11:16:38Z biological_process owl:Class GO:0031995 biolink:NamedThing insulin-like growth factor II binding Binding to insulin-like growth factor II. tmpzr1t_l9r_go_relaxed.owl IGF-II binding molecular_function owl:Class GO:0005520 biolink:NamedThing insulin-like growth factor binding Binding to an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it. tmpzr1t_l9r_go_relaxed.owl IGF binding molecular_function owl:Class GO:0070803 biolink:NamedThing negative regulation of metula development Any process that stops, prevents, or reduces the frequency, rate or extent of metula development, a process that leads to the formation of metulae. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:38:04Z biological_process owl:Class GO:0070802 biolink:NamedThing regulation of metula development Any process that modulates the frequency, rate or extent of metula development, a process that leads to the formation of metulae. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:14:34Z biological_process owl:Class GO:0005586 biolink:NamedThing collagen type III trimer A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031525 biolink:NamedThing menthol biosynthetic process The chemical reactions and pathways resulting in the formation of menthol, the monoterpene 2-isopropyl-5-methylcyclohexanol. tmpzr1t_l9r_go_relaxed.owl menthol anabolism|menthol synthesis|menthol biosynthesis|menthol formation biological_process owl:Class GO:0042444 biolink:NamedThing phenylethylamine biosynthetic process The chemical reactions and pathways resulting in the formation of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds. tmpzr1t_l9r_go_relaxed.owl phenylethylamine synthesis|phenylethylamine anabolism|phenylethylamine formation|phenylethylamine biosynthesis biological_process owl:Class GO:0019427 biolink:NamedThing acetyl-CoA biosynthetic process from acetate The chemical reactions and pathways resulting in the formation of acetyl-CoA from acetate, either directly or via acetylphosphate. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA anabolism from acetate|acetyl-CoA synthesis from acetate|acetyl-CoA formation from acetate|acetate utilization MetaCyc:ACETATEUTIL-PWY biological_process owl:Class GO:0004378 biolink:NamedThing GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity Catalysis of the reaction: beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP-alpha-D-mannose = alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + GDP + H+. This reaction is the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->3)-D-mannosyl-D-mannose linkage. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:glycolipid 1,3-alpha-D-mannosyltransferase activity|GDP-D-mannose:D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol 3-alpha-mannosyltransferase activity|glycolipid 3-alpha-mannosyltransferase activity|guanosine diphosphomannose-oligosaccharide-lipid II mannosyltransferase activity|mannosyltransferase II activity|GDP-mannose-oligosaccharide-lipid mannosyltransferase II EC:2.4.1.132|RHEA:29515|MetaCyc:2.4.1.132-RXN molecular_function owl:Class GO:0004376 biolink:NamedThing glycolipid mannosyltransferase activity Catalysis of the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-D-mannosyl-D-mannose linkage. tmpzr1t_l9r_go_relaxed.owl glycolipid mannosyl transferase activity Reactome:R-HSA-162873|Reactome:R-HSA-162821 GO:0004580 molecular_function owl:Class GO:1902435 biolink:NamedThing regulation of male mating behavior Any process that modulates the frequency, rate or extent of male mating behavior. tmpzr1t_l9r_go_relaxed.owl mm2 2013-10-09T15:49:56Z biological_process owl:Class GO:0008706 biolink:NamedThing 6-phospho-beta-glucosidase activity Catalysis of the reaction: 6-phospho-beta-D-glucoside-(1,4)-D-glucose + H2O = D-glucose 6-phosphate + glucose. tmpzr1t_l9r_go_relaxed.owl phospho-beta-glucosidase A|phospho-beta-glucosidase activity|6-phospho-beta-D-glucosyl-(1,4)-D-glucose glucohydrolase activity|phosphocellobiase activity RHEA:10772|EC:3.2.1.86|MetaCyc:6-PHOSPHO-BETA-GLUCOSIDASE-RXN molecular_function owl:Class GO:1905090 biolink:NamedThing negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization Any process that stops, prevents or reduces the frequency, rate or extent of parkin-mediated mitophagy in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl down regulation of parkin-mediated mitophagy in response to mitochondrial depolarization|down-regulation of parkin-mediated mitophagy in response to mitochondrial depolarization|negative regulation of Park2-mediated stimulation of mitophagy in response to mitochondrial depolarization|downregulation of parkin-mediated mitophagy in response to mitochondrial depolarization|inhibition of parkin-mediated mitophagy in response to mitochondrial depolarization|negative regulation of PRKN-mediated stimulation of mitophagy in response to mitochondrial depolarization pad 2016-03-30T15:34:38Z biological_process owl:Class GO:1905089 biolink:NamedThing regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization Any process that modulates the frequency, rate or extent of a parkin-mediated process that positively regulates mitophagy in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl regulation of PRKN-mediated stimulation of mitophagy in response to mitochondrial depolarization|regulation of Park2-mediated stimulation of mitophagy in response to mitochondrial depolarization pad 2016-03-30T15:34:29Z biological_process owl:Class GO:0071984 biolink:NamedThing maintenance of reproductive diapause The dormancy process that results an organism remaining in reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-21T04:49:28Z biological_process owl:Class GO:1990649 biolink:NamedThing inositol-1,2,4,5-tetrakisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 1,2,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,2,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2015-02-23T11:12:10Z molecular_function owl:Class GO:0052743 biolink:NamedThing inositol tetrakisphosphate phosphatase activity Catalysis of the reaction: myo-inositol tetrakisphosphate + H2O = myo-inositol trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-14T01:31:39Z molecular_function owl:Class GO:0031370 biolink:NamedThing eukaryotic initiation factor 4G binding Binding to eukaryotic initiation factor 4G, a polypeptide factor involved in the initiation of ribosome-mediated translation. tmpzr1t_l9r_go_relaxed.owl eIF4G binding molecular_function owl:Class GO:0031369 biolink:NamedThing translation initiation factor binding Binding to a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120240 biolink:NamedThing platelet glycocalyx The carbohydrate rich layer at the outermost periphery of a platelet. tmpzr1t_l9r_go_relaxed.owl krc 2020-07-27T22:44:42Z cellular_component owl:Class GO:0140244 biolink:NamedThing regulation of translation at presynapse Any process that regulates translation occurring at the presynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T09:38:33Z biological_process owl:Class GO:0000459 biolink:NamedThing exonucleolytic trimming involved in rRNA processing Exonucleolytic digestion of a pre-rRNA molecule in the process to generate a mature rRNA molecule. tmpzr1t_l9r_go_relaxed.owl exonucleolytic trimming during rRNA processing biological_process owl:Class GO:1900676 biolink:NamedThing negative regulation of F-9775B biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of F-9775B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of F-9775B biosynthetic process|down-regulation of F-9775B synthesis|inhibition of F-9775B anabolism|down-regulation of F-9775B biosynthetic process|down regulation of F-9775B formation|down regulation of F-9775B biosynthesis|negative regulation of F-9775B anabolism|negative regulation of F-9775B formation|down-regulation of F-9775B biosynthesis|downregulation of F-9775B synthesis|downregulation of F-9775B formation|inhibition of F-9775B synthesis|downregulation of F-9775B anabolism|negative regulation of F-9775B synthesis|negative regulation of F-9775B biosynthesis|down regulation of F-9775B anabolism|downregulation of F-9775B biosynthesis|inhibition of F-9775B biosynthetic process|inhibition of F-9775B formation|down-regulation of F-9775B formation|inhibition of F-9775B biosynthesis|down-regulation of F-9775B anabolism|down regulation of F-9775B biosynthetic process|down regulation of F-9775B synthesis di 2012-05-22T04:26:53Z biological_process owl:Class GO:0043853 biolink:NamedThing methanol-CoM methyltransferase complex A heterotrimeric protein complex composed of a methanol methyltransferase subunit, a corrinoid protein and a methanol-specific corrinoid:coenzyme M methyltransferase subunit. Catalyzes the transfer of a methyl group from methanol to coenzyme M as part of the pathway of methanogenesis from methanol. tmpzr1t_l9r_go_relaxed.owl methanol: coenzyme M methyltransferase complex|methanol:CoM methyltransferase complex|methanol: CoM methyltransferase complex|methanol-coenzyme M methyltransferase complex|methanol:coenzyme M methyltransferase complex MetaCyc:CPLX-421 cellular_component owl:Class GO:0035168 biolink:NamedThing larval lymph gland hemocyte differentiation The process in which a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl larval lymph gland arthropod blood cell differentiation biological_process owl:Class GO:1905321 biolink:NamedThing negative regulation of mesenchymal stem cell migration Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal stem cell migration. tmpzr1t_l9r_go_relaxed.owl downregulation of mesenchymal stem cell migration|down-regulation of mesenchymal stem cell migration|down regulation of mesenchymal stem cell migration|inhibition of mesenchymal stem cell migration sl 2016-07-15T22:19:22Z biological_process owl:Class GO:0015367 biolink:NamedThing oxoglutarate:malate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: oxoglutarate(out) + malate(in) = oxoglutarate(in) + malate(out). tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate/malate carrier protein Reactome:R-HSA-376851|Reactome:R-HSA-198440 molecular_function owl:Class GO:0015140 biolink:NamedThing malate transmembrane transporter activity Enables the transfer of malate from one side of a membrane to the other. Malate is a chiral hydroxydicarboxylic acid, hydroxybutanedioic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl dicarboxylate (succinate/fumarate/malate) antiporter activity molecular_function owl:Class GO:0035185 biolink:NamedThing preblastoderm mitotic cell cycle The first nine mitotic division cycles of the insect embryo, during which the dividing nuclei lie deep in the interior of the egg and divide nearly synchronously. This is the first phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010089 biolink:NamedThing xylem development The formation of the principal water-conducting tissue of a vascular plant. tmpzr1t_l9r_go_relaxed.owl xylem histogenesis biological_process owl:Class GO:0010087 biolink:NamedThing phloem or xylem histogenesis The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl vascular tissue development|vascular tissue histogenesis biological_process owl:Class GO:0002001 biolink:NamedThing renin secretion into blood stream The regulated release of renin into the blood stream by juxtoglomerular cells. tmpzr1t_l9r_go_relaxed.owl renin release into blood stream biological_process owl:Class GO:0046188 biolink:NamedThing methane catabolic process The chemical reactions and pathways resulting in the breakdown of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes. tmpzr1t_l9r_go_relaxed.owl methane catabolism|methane degradation|methane breakdown biological_process owl:Class GO:1900715 biolink:NamedThing positive regulation of violaceol I biosynthetic process Any process that activates or increases the frequency, rate or extent of violaceol I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of violaceol I biosynthesis|positive regulation of violaceol I synthesis|up regulation of violaceol I biosynthesis|positive regulation of violaceol I formation|up regulation of violaceol I formation|upregulation of violaceol I synthesis|activation of violaceol I biosynthetic process|upregulation of violaceol I anabolism|activation of violaceol I synthesis|up regulation of violaceol I synthesis|upregulation of violaceol I biosynthesis|positive regulation of violaceol I anabolism|activation of violaceol I biosynthesis|upregulation of violaceol I formation|up-regulation of violaceol I anabolism|up-regulation of violaceol I biosynthetic process|activation of violaceol I formation|activation of violaceol I anabolism|up regulation of violaceol I anabolism|up regulation of violaceol I biosynthetic process|up-regulation of violaceol I biosynthesis|up-regulation of violaceol I synthesis|upregulation of violaceol I biosynthetic process|up-regulation of violaceol I formation di 2012-05-22T05:04:41Z biological_process owl:Class GO:0051068 biolink:NamedThing dihydrolipoamide metabolic process The chemical reactions and pathways involving dihydrolipoamide, the reduced form of lipoamide, produced as an intermediate in the reactions in which lipoamide acts as a cofactor. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide metabolism|dihydrothioctamide metabolism|dihydrothioctamide metabolic process|dihydrolipoamide reduction biological_process owl:Class GO:0006481 biolink:NamedThing C-terminal protein methylation The methylation of the C-terminal amino acid of a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein amino acid methylation biological_process owl:Class GO:0006479 biolink:NamedThing protein methylation The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid methylation biological_process owl:Class GO:0044762 biolink:NamedThing negative regulation by symbiont of host neurotransmitter secretion Any process in which a symbiont organism negatively regulates the regulated release of a neurotransmitter from a cell in its host organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-12-06T15:52:20Z biological_process owl:Class GO:0044233 biolink:NamedThing mitochondria-associated endoplasmic reticulum membrane A zone of apposition between endoplasmic-reticulum and mitochondrial membranes, structured by bridging complexes. These contact sites are thought to facilitate inter-organelle calcium and phospholipid exchange. tmpzr1t_l9r_go_relaxed.owl mitochondria-associated membrane|endoplasmic reticulum-mitochondrion membrane contact site|mitochondria-associated ER membrane|mitochondria-endoplasmic reticulum (ER) contact|MAM|ER-mitochondrion membrane contact site jl 2010-01-07T04:07:24Z cellular_component owl:Class GO:0062067 biolink:NamedThing chloroplast photosystem I binding Binding to a chloroplast photosystem I. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:07:46Z molecular_function owl:Class GO:1900805 biolink:NamedThing brevianamide F biosynthetic process The chemical reactions and pathways resulting in the formation of brevianamide F. tmpzr1t_l9r_go_relaxed.owl C16H17N3O2 synthesis|cyclo-L-Trp-L-Pro anabolism|L-prolyl-L-tryptophan anhydride biosynthetic process|L-tryptophyl-L-proline cyclic anhydride biosynthetic process|cyclo-(Trp-Pro) synthesis|cyclo-L-Trp-L-Pro formation|C16H17N3O2 biosynthetic process|tryptophan-proline diketopiperazine formation|C16H17N3O2 anabolism|L-tryptophyl-L-proline cyclic anhydride synthesis|cyclo-(Trp-Pro) biosynthesis|cyclo-(Trp-Pro) biosynthetic process|brevianamide F synthesis|cyclo-L-tryptophanyl-L-proline anabolism|cyclo-L-tryptophanyl-L-proline biosynthetic process|L-prolyl-L-tryptophan anhydride formation|cyclo-L-Trp-L-Pro biosynthetic process|tryptophan-proline diketopiperazine biosynthesis|L-tryptophyl-L-proline cyclic anhydride biosynthesis|cyclo-L-Trp-L-Pro synthesis|L-tryptophyl-L-proline cyclic anhydride anabolism|L-tryptophyl-L-proline cyclic anhydride formation|cyclo-L-tryptophanyl-L-proline formation|cyclo-(Trp-Pro) anabolism|brevianamide F anabolism|tryptophan-proline diketopiperazine synthesis|C16H17N3O2 formation|tryptophan-proline diketopiperazine anabolism|cyclo-L-tryptophanyl-L-proline synthesis|brevianamide F biosynthesis|brevianamide F formation|cyclo-L-Trp-L-Pro biosynthesis|C16H17N3O2 biosynthesis|L-prolyl-L-tryptophan anhydride anabolism|cyclo-(Trp-Pro) formation|L-prolyl-L-tryptophan anhydride biosynthesis|tryptophan-proline diketopiperazine biosynthetic process|cyclo-L-tryptophanyl-L-proline biosynthesis|L-prolyl-L-tryptophan anhydride synthesis di 2012-06-04T09:52:48Z biological_process owl:Class GO:0048011 biolink:NamedThing neurotrophin TRK receptor signaling pathway A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl TrkB signaling pathway|TrkA signaling pathway|TrkC signaling pathway|tropomyosin-receptor-kinase signaling biological_process owl:Class GO:0038179 biolink:NamedThing neurotrophin signaling pathway A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Neurotrophins are a family of secreted growth factors that induce the survival, development, and function of neurons. tmpzr1t_l9r_go_relaxed.owl neurotrophin receptor signaling pathway There are two classes of receptors for neurotrophins: p75 and the Trk family of tyrosine kinase receptors. bf 2013-03-27T17:22:44Z biological_process owl:Class GO:0006572 biolink:NamedThing tyrosine catabolic process The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl tyrosine catabolism|tyrosine breakdown|tyrosine degradation biological_process owl:Class GO:0071729 biolink:NamedThing beak morphogenesis The process in which the anatomical structures of the beak are generated and organized. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-17T03:54:34Z biological_process owl:Class GO:0046174 biolink:NamedThing polyol catabolic process The chemical reactions and pathways resulting in the breakdown of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. tmpzr1t_l9r_go_relaxed.owl polyol breakdown|polyhydric alcohol catabolic process|polyol degradation|polyol catabolism biological_process owl:Class GO:0070212 biolink:NamedThing protein poly-ADP-ribosylation The transfer of multiple ADP-ribose residues from NAD to a protein amino acid, forming a poly(ADP-ribose) chain. tmpzr1t_l9r_go_relaxed.owl protein poly(ADP-ribose) metabolism|protein amino acid poly-ADP-ribosylation|poly(ADP-ribose) addition to protein|addition of poly-ADP-ribose to protein|protein poly(ADP-ribose) synthesis biological_process owl:Class GO:0050836 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl L-arginyl diiron disulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl L-arginyl diiron disulfide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0357 biological_process owl:Class GO:2001304 biolink:NamedThing lipoxin B4 metabolic process The chemical reactions and pathways involving lipoxin B4. Lipoxin B4 is a C20 hydroxy fatty acid having (5S)-, (14R)- and (15S)-hydroxy groups as well as (6E)- (8Z)-, (10E)- and (12E)-double bonds. tmpzr1t_l9r_go_relaxed.owl LXB4 metabolism|lipoxin B4 metabolism|LXB4 metabolic process bf 2012-03-07T11:14:58Z biological_process owl:Class GO:2001300 biolink:NamedThing lipoxin metabolic process The chemical reactions and pathways involving a lipoxin. A lipoxin is a non-classic eicosanoid and signalling molecule that has four conjugated double bonds and is derived from arachidonic acid. tmpzr1t_l9r_go_relaxed.owl lipoxin metabolism bf 2012-03-07T11:11:08Z biological_process owl:Class GO:0045937 biolink:NamedThing positive regulation of phosphate metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. tmpzr1t_l9r_go_relaxed.owl upregulation of phosphate metabolic process|positive regulation of phosphate metabolism|activation of phosphate metabolic process|up regulation of phosphate metabolic process|stimulation of phosphate metabolic process|up-regulation of phosphate metabolic process biological_process owl:Class GO:0050817 biolink:NamedThing coagulation The process in which a fluid solution, or part of it, changes into a solid or semisolid mass. tmpzr1t_l9r_go_relaxed.owl clotting biological_process owl:Class GO:0070511 biolink:NamedThing negative regulation of histone H4-K20 methylation Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 20 of histone H4. tmpzr1t_l9r_go_relaxed.owl down regulation of histone H4-K20 methylation|down-regulation of histone H4-K20 methylation|inhibition of histone H4-K20 methylation|downregulation of histone H4-K20 methylation biological_process owl:Class GO:0046554 biolink:NamedThing malate dehydrogenase (NADP+) activity Catalysis of the reaction: (S)-malate + NADP+ = oxaloacetate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl malate NADP dehydrogenase activity|malic dehydrogenase (nicotinamide adenine dinucleotide phosphate)|NADP-malate dehydrogenase activity|(S)-malate:NADP+ oxidoreductase activity|NADP-linked malate dehydrogenase activity|NADP malate dehydrogenase activity RHEA:10824|KEGG_REACTION:R00343|MetaCyc:MALATE-DEHYDROGENASE-NADP+-RXN|EC:1.1.1.82 molecular_function owl:Class GO:0033439 biolink:NamedThing ACA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an ACA codon. tmpzr1t_l9r_go_relaxed.owl threonine tRNA Note that in the standard genetic code, ACA codes for threonine. molecular_function owl:Class GO:0015157 biolink:NamedThing oligosaccharide transmembrane transporter activity Enables the transfer of oligosaccharide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl endosomal oligosaccharide transporter molecular_function owl:Class GO:0002636 biolink:NamedThing positive regulation of germinal center formation Any process that activates or increases the frequency, rate, or extent of germinal center formation. tmpzr1t_l9r_go_relaxed.owl up regulation of germinal center formation|activation of germinal center formation|stimulation of germinal center formation|upregulation of germinal center formation|up-regulation of germinal center formation biological_process owl:Class GO:0140662 biolink:NamedThing ATP-dependent protein folding chaperone Binding to a protein or a protein-containing complex to assist the protein folding process, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21660 pg 2021-06-19T16:28:34Z molecular_function owl:Class GO:0032298 biolink:NamedThing positive regulation of DNA-dependent DNA replication initiation Any process that activates or increases the frequency, rate or extent of initiation of DNA-dependent DNA replication. tmpzr1t_l9r_go_relaxed.owl up regulation of DNA replication initiation|upregulation of DNA replication initiation|negative regulation of DNA replication initiation|activation of DNA replication initiation|up-regulation of DNA replication initiation|stimulation of DNA replication initiation biological_process owl:Class GO:0051292 biolink:NamedThing nuclear pore complex assembly The aggregation, arrangement and bonding together of a set of components to form a nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl nuclear pore formation|nuclear pore biogenesis|nuclear pore complex biogenesis|NPC assembly|nuclear pore complex biosynthesis|nuclear pore biosynthesis|nuclear pore assembly|nuclear pore complex formation biological_process owl:Class GO:0006999 biolink:NamedThing nuclear pore organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear pore. tmpzr1t_l9r_go_relaxed.owl nuclear pore organization and biogenesis|nuclear pore organisation|nuclear pore complex organization and biogenesis biological_process owl:Class GO:1903651 biolink:NamedThing positive regulation of cytoplasmic transport Any process that activates or increases the frequency, rate or extent of cytoplasmic transport. tmpzr1t_l9r_go_relaxed.owl activation of cytoplasmic transport|positive regulation of cytoplasmic streaming|upregulation of cytoplasmic transport|up regulation of cytoplasmic streaming|up-regulation of cytoplasmic streaming|up-regulation of cytoplasmic transport|activation of cytoplasmic streaming|upregulation of cytoplasmic streaming|up regulation of cytoplasmic transport jl 2014-11-24T13:38:34Z biological_process owl:Class GO:0070974 biolink:NamedThing POU domain binding Binding to a POU domain of a protein. The POU domain is a bipartite DNA binding domain composed of two subunits separated by a non-conserved region of 15-55 amino acids; it is found in several eukaryotic transcription factors. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-02T12:53:02Z molecular_function owl:Class GO:1901832 biolink:NamedThing all-trans-neoxanthin catabolic process The chemical reactions and pathways resulting in the breakdown of all-trans-neoxanthin. tmpzr1t_l9r_go_relaxed.owl all-trans-neoxanthin breakdown|neoxanthin catabolic process|neoxanthin breakdown|neoxanthin catabolism|all-trans-neoxanthin degradation|all-trans-neoxanthin catabolism|neoxanthin degradation yaf 2013-01-22T12:43:51Z biological_process owl:Class GO:0006273 biolink:NamedThing lagging strand elongation The process in which an existing DNA strand is extended in a net 3' to 5' direction by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12633 biological_process owl:Class GO:0140327 biolink:NamedThing flippase activity Catalysis of the movement of lipids from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl flippase activity (exoplasmic to cytosolic leaftlet) Nomenclature note. Flippases and floppases are ATP-dependent transbilayer lipid translocators. According to an extensively used, though not universal, nomenclature, they catalyze lipid transfer towards the inward monolayer (flippases) or towards the outward monolayer (floppases). Scramblases are ATP-independent, non-selective, inducing non-specific transbilayer movements across the membrane. The direction of the translocation should be taken into account for annotation (from the exoplasmic to the cytosolic leaftlet of a membrane). pg 2019-04-29T12:51:21Z molecular_function owl:Class GO:2001303 biolink:NamedThing lipoxin A4 biosynthetic process The chemical reactions and pathways resulting in the formation of lipoxin A4. Lipoxin A4 is a C20 hydroxy fatty acid having (5S)-, (6R)- and (15S)-hydroxy groups as well as (7E)- (9E)-, (11Z)- and (13E)-double bonds. tmpzr1t_l9r_go_relaxed.owl LXA4 biosynthetic process|lipoxin A4 biosynthesis|LXA4 biosynthesis|lipoxin A4 anabolism|LXA4 synthesis|LXA4 anabolism|LXA4 formation|lipoxin A4 synthesis|lipoxin A4 formation bf 2012-03-07T11:13:18Z biological_process owl:Class GO:0014819 biolink:NamedThing regulation of skeletal muscle contraction Any process that modulates the frequency, rate or extent of skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035840 biolink:NamedThing old growing cell tip A cell tip which has existed for at least one complete cell cycle, and at which polarized growth occurs. For example, in fission yeast the cell end that existed prior to cell division grows immediately after division, and contains a distinctive complement of proteins including actin cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl old growing cell end bf 2011-05-06T01:33:54Z cellular_component owl:Class GO:0035838 biolink:NamedThing growing cell tip The region at either end of the longest axis of a cylindrical or elongated cell, where polarized growth occurs. tmpzr1t_l9r_go_relaxed.owl growing cell end bf 2011-05-06T01:28:44Z cellular_component owl:Class GO:0046962 biolink:NamedThing sodium-transporting ATPase activity, rotational mechanism Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) -> ADP + phosphate + Na+(out), by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl Na+-transporting two-sector ATPase|ATP phosphohydrolase (Na+-transporting) activity|Na(+)-translocating ATPase activity|ATP synthase, sodium ion specific activity|sodium-transporting two-sector ATPase activity|Na+-translocating F1Fo-ATPase|sodium-translocating F-type ATPase activity|Na+-translocating ATPase activity|sodium-translocating V-type ATPase activity|vacuolar-type Na+-ATPase|vacuolar-type Na+-translocating ATPase|Na(+)-transporting two-sector ATPase activity|sodium transporting ATPase activity, rotational mechanism https://github.com/geneontology/go-ontology/issues/21796 MetaCyc:3.6.3.15-RXN|EC:7.2.2.1|RHEA:58156|RHEA:58157 Found in some halophilic or alkalophilic bacteria that functions in maintaining sodium homeostasis; similar to EC:7.1.2.2 but pumps Na(+) rather than H(+). (Source: EC:7.2.2.1) molecular_function owl:Class GO:0004396 biolink:NamedThing hexokinase activity Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP-dependent hexokinase activity|hexokinase (phosphorylating)|hexokinase type I activity|ATP:D-hexose 6-phosphotransferase activity|hexokinase type II activity|hexokinase type IV|hexokinase type III activity|hexokinase type IV (glucokinase) activity|glucose ATP phosphotransferase activity|hexokinase type IV glucokinase activity|hexokinase D MetaCyc:HEXOKINASE-RXN|RHEA:22740|EC:2.7.1.1 molecular_function owl:Class GO:0014875 biolink:NamedThing detection of muscle activity involved in regulation of muscle adaptation The series of events by which a muscle activity stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl detection of fatigue biological_process owl:Class GO:0014864 biolink:NamedThing detection of muscle activity The series of events in which a muscle activity stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060638 biolink:NamedThing mesenchymal-epithelial cell signaling Any process that mediates the transfer of information from a mesenchymal cell to an epithelial cell where it is received and interpreted. tmpzr1t_l9r_go_relaxed.owl mesenchymal-epithelial cell signalling dph 2009-05-19T03:59:05Z biological_process owl:Class GO:1990402 biolink:NamedThing embryonic liver development The process occurring during the embryonic phase whose specific outcome is the progression of the liver over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl sl 2014-06-23T20:52:03Z biological_process owl:Class GO:0048568 biolink:NamedThing embryonic organ development Development, taking place during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl embryonic organogenesis biological_process owl:Class GO:0043633 biolink:NamedThing polyadenylation-dependent RNA catabolic process The chemical reactions and pathways resulting in the breakdown of an RNA molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3'-end of the target RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098904 biolink:NamedThing regulation of AV node cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrioventricular node myocyte. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl regulation of atrioventricular node cardiac muscle cell action potential|regulation of AV node cardiac muscle cell action potential tb 2011-11-10T08:58:56Z biological_process owl:Class GO:1904201 biolink:NamedThing regulation of iodide transport Any process that modulates the frequency, rate or extent of iodide transport. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-08T15:19:57Z biological_process owl:Class GO:1903082 biolink:NamedThing positive regulation of C-C chemokine receptor CCR7 signaling pathway Any process that activates or increases the frequency, rate or extent of C-C chemokine receptor CCR7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of C-C chemokine receptor CCR7 signalling pathway|up-regulation of CCR7 signaling pathway|upregulation of C-C chemokine receptor CCR7 signaling pathway|activation of C-C chemokine receptor CCR7 signalling pathway|up regulation of C-C chemokine receptor CCR7 signalling pathway|activation of C-C chemokine receptor CCR7 signaling pathway|positive regulation of C-C chemokine receptor CCR7 signalling pathway|up-regulation of C-C chemokine receptor CCR7 signaling pathway|up regulation of CCR7 signaling pathway|upregulation of CCR7 signaling pathway|up regulation of C-C chemokine receptor CCR7 signaling pathway|positive regulation of CCR7 signaling pathway|up-regulation of C-C chemokine receptor CCR7 signalling pathway|activation of CCR7 signaling pathway rl 2014-05-29T18:33:01Z biological_process owl:Class GO:0098801 biolink:NamedThing regulation of renal system process Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by the renal system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035022 biolink:NamedThing positive regulation of Rac protein signal transduction Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of Rac protein signal transduction|up regulation of Rac protein signal transduction|stimulation of Rac protein signal transduction|upregulation of Rac protein signal transduction|activation of Rac protein signal transduction biological_process owl:Class GO:0046579 biolink:NamedThing positive regulation of Ras protein signal transduction Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction. tmpzr1t_l9r_go_relaxed.owl activation of Ras protein signal transduction|up-regulation of Ras protein signal transduction|up regulation of Ras protein signal transduction|upregulation of Ras protein signal transduction|stimulation of Ras protein signal transduction biological_process owl:Class GO:0006601 biolink:NamedThing creatine biosynthetic process The chemical reactions and pathways resulting in the formation of creatine, N-[amino(imino)methyl]-N-methylglycine. Creatine is formed by a process beginning with amidino group transfer from L-arginine to glycine to form guanidinoacetate, followed by methyl group transfer from S-adenosyl-L-methionine to guanidinoacetate; it is then is phosphorylated to form a pool that stores high energy phosphate for the replenishment of ATP during periods of high, or fluctuating energy demand. In animals, most creatine is transported to and used in muscle. tmpzr1t_l9r_go_relaxed.owl creatine synthesis|creatine anabolism|creatine formation|creatine biosynthesis biological_process owl:Class GO:0003351 biolink:NamedThing epithelial cilium movement involved in extracellular fluid movement The directed, self-propelled movement of cilia of epithelial cells. Depending on the type of cell, there may be one or many cilia per cell. This movement is usually coordinated between many epithelial cells, and serves to move extracellular fluid. tmpzr1t_l9r_go_relaxed.owl cilium movement involved in fluid flow|epithelial cilium beating dph 2009-12-03T10:08:25Z biological_process owl:Class GO:1905398 biolink:NamedThing activated CD4-positive, alpha-beta T cell apoptotic process Any apoptotic process in an activated CD4-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|activated CD4-positive, alpha-beta T-cell apoptosis|activated CD4-positive, alpha-beta T-lymphocyte apoptosis|activated CD4-positive, alpha-beta T cell apoptosis|activated CD4-positive, alpha-beta T lymphocyte apoptotic process|activated CD4-positive, alpha-beta T lymphocyte apoptosis|activated CD4-positive, alpha-beta T-cell apoptotic process pga 2016-08-25T08:13:40Z biological_process owl:Class GO:0071575 biolink:NamedThing integral component of external side of plasma membrane The component of the plasma membrane consisting of the gene products that penetrate only the external side of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to external side of plasma membrane|integral to external leaflet of plasma membrane mah 2010-01-26T05:20:28Z cellular_component owl:Class GO:0031233 biolink:NamedThing intrinsic component of external side of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that penetrate the external side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor. tmpzr1t_l9r_go_relaxed.owl intrinsic to external side of plasma membrane|intrinsic to external leaflet of plasma membrane cellular_component owl:Class GO:0031458 biolink:NamedThing ABC-type betaine transporter activity Catalysis of the reaction: ATP + H2O + a betaine(out) = ADP + phosphate + a betaine(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled betaine transporter activity|betaine-transporting ATPase activity|ABC-type betaine transmembrane transporter activity|ATP-dependent betaine transporter activity|betaine ABC transporter molecular_function owl:Class GO:0099043 biolink:NamedThing cargo loading involved in clathrin-dependent endocytosis Formation of a macromolecular complex during clathrin-dependent endocytosis that connects the assembling clathrin coat to the proteins and/or lipoproteins to be transported in an endocytic vesicle. This complex includes a receptor and an adaptor protein that links the receptor to the clathrin coat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035652 biolink:NamedThing clathrin-coated vesicle cargo loading Formation of a macromolecular complex between the cytoplasmic coat proteins on clathrin-coated vesicles and proteins and/or lipoproteins that are going to be transported by a vesicle. tmpzr1t_l9r_go_relaxed.owl cargo loading into clathrin-coated vesicle bf 2011-01-25T11:00:43Z biological_process owl:Class GO:0000270 biolink:NamedThing peptidoglycan metabolic process The chemical reactions and pathways involving peptidoglycans, any of a class of glycoconjugates found only in bacterial cell walls and consisting of strands of glycosaminoglycan cross-linked by oligopeptides to form a huge and rigid network. tmpzr1t_l9r_go_relaxed.owl murein metabolic process|peptidoglycan metabolism|murein metabolism GO:0009284 biological_process owl:Class GO:0086030 biolink:NamedThing adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation An adrenergic receptor signaling pathway that contributes to a reduction in cardiac muscle contraction. Beta-adrenergic receptor-induced cardiac relaxation is achieved by a GPCR-activated adenylate cyclase generating cAMP; cAMP then activates the cAMP-dependent protein kinase A (PKA), which phosphorylates the sarcoplasmic reticulum (SR) membrane protein PLB. In its non-phosphorylated state, PLB acts as an inhibitor of the ATPase Ca(2+) pump of the cardiac SR (SERCA2a); inhibition of the pump is relieved upon phosphorylation. The pump removes Ca(2+) from the cytoplasm, thereby preventing cytosolic Ca(2+)-dependent activation of contractile proteins, leading to enhanced muscle relaxation. tmpzr1t_l9r_go_relaxed.owl Gs-coupled adrenergic receptor signaling pathway involved in cardiac muscle relaxation|adrenergic receptor signaling pathway involved in cardiac muscle relaxation|adrenergic receptor-induced cardiac relaxation|adrenergic receptor signaling pathway involved in cardiac muscle relaxation via activation of AC tb 2011-11-11T02:53:24Z biological_process owl:Class GO:0045886 biolink:NamedThing negative regulation of synaptic assembly at neuromuscular junction Any process that stops, prevents, or reduces the frequency, rate or extent of synaptic assembly at neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl inhibition of synaptic growth at neuromuscular junction|negative regulation of synaptic growth at neuromuscular junction|down regulation of synaptic growth at neuromuscular junction|downregulation of synaptic growth at neuromuscular junction|down-regulation of synaptic growth at neuromuscular junction biological_process owl:Class GO:0051964 biolink:NamedThing negative regulation of synapse assembly Any process that stops, prevents, or reduces the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse. tmpzr1t_l9r_go_relaxed.owl down regulation of synapse assembly|negative regulation of synaptogenesis|downregulation of synapse assembly|negative regulation of synapse biogenesis|down-regulation of synapse assembly|inhibition of synapse assembly biological_process owl:Class GO:0090212 biolink:NamedThing negative regulation of establishment of blood-brain barrier Any process that decreases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain. tmpzr1t_l9r_go_relaxed.owl negative regulation of establishment of BBB tb 2009-12-23T12:15:53Z biological_process owl:Class GO:0090210 biolink:NamedThing regulation of establishment of blood-brain barrier Any process that modulates the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of BBB tb 2009-12-23T12:15:53Z biological_process owl:Class GO:1905039 biolink:NamedThing carboxylic acid transmembrane transport The process in which carboxylic acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-03-09T15:33:53Z biological_process owl:Class GO:0102827 biolink:NamedThing galactosylononitol-raffinose galactosyltransferase activity Catalysis of the reaction: raffinose + D-galactosylononitol = stachyose + 1D-4-O-methyl-myo-inositol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8282 molecular_function owl:Class GO:0051255 biolink:NamedThing spindle midzone assembly The cell cycle process in which aggregation, arrangement and bonding together of a set of components to form the spindle midzone. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap. tmpzr1t_l9r_go_relaxed.owl spindle midzone formation|spindle midzone biosynthesis|spindle midzone biogenesis biological_process owl:Class GO:0015136 biolink:NamedThing sialic acid transmembrane transporter activity Enables the transfer of sialic acid from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061302 biolink:NamedThing smooth muscle cell-matrix adhesion The binding of a smooth muscle cell to the extracellular matrix via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T11:08:00Z biological_process owl:Class GO:1905011 biolink:NamedThing transmembrane phosphate ion transport from cytosol to vacuole The directed movement of phosphate ions from the cytosol across the vacuolar membrane and into the vacuolar lumen. tmpzr1t_l9r_go_relaxed.owl vacuolar phosphate transport tb 2016-03-03T00:34:12Z GO:0007037 biological_process owl:Class GO:2000286 biolink:NamedThing receptor internalization involved in canonical Wnt signaling pathway A receptor internalization process that contributes to canonical Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl receptor internalization involved in canonical Wnt receptor signalling pathway|receptor internalization involved in Wnt receptor signalling pathway through beta-catenin|receptor internalization involved in canonical Wnt-activated signaling pathway|receptor internalization involved in Wnt receptor signaling pathway through beta-catenin|receptor internalization involved in canonical Wnt receptor signaling pathway|receptor internalization involved in Wnt receptor signaling pathway via beta-catenin|receptor internalization involved in frizzled-1 receptor signaling pathway mah 2010-12-15T12:25:40Z biological_process owl:Class GO:1904892 biolink:NamedThing regulation of receptor signaling pathway via STAT Any process that modulates the frequency, rate or extent of receptor signaling via STAT. tmpzr1t_l9r_go_relaxed.owl regulation of kinase-STAT cascade|regulation of kinase activated-STAT cascade|regulation of STAT signalling pathway pr 2016-01-08T08:14:33Z biological_process owl:Class GO:0010500 biolink:NamedThing transmitting tissue development The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048467 biolink:NamedThing gynoecium development The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. tmpzr1t_l9r_go_relaxed.owl pistil development biological_process owl:Class GO:2000837 biolink:NamedThing regulation of androstenedione secretion Any process that modulates the frequency, rate or extent of androstenedione secretion. tmpzr1t_l9r_go_relaxed.owl regulation of androst-4-ene-3,17-dione secretion bf 2011-07-26T08:40:36Z biological_process owl:Class GO:1900099 biolink:NamedThing negative regulation of plasma cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of plasma cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of plasma cell development|down regulation of plasma cell differentiation|down-regulation of plasma cell development|downregulation of plasma cell differentiation|negative regulation of plasma cell development|down regulation of plasma cell development|downregulation of plasma cell development|inhibition of plasma cell differentiation|down-regulation of plasma cell differentiation bf 2012-02-15T10:46:05Z biological_process owl:Class GO:0008618 biolink:NamedThing 7-methylguanosine metabolic process The chemical reactions and pathways involving 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA. tmpzr1t_l9r_go_relaxed.owl 7-methylguanosine metabolism biological_process owl:Class GO:1901068 biolink:NamedThing guanosine-containing compound metabolic process The chemical reactions and pathways involving guanosine-containing compounds (guanosines). tmpzr1t_l9r_go_relaxed.owl guanosines metabolism|guanosines metabolic process|guanosine-containing compound metabolism bf 2012-07-02T01:51:37Z biological_process owl:Class GO:0031795 biolink:NamedThing G protein-coupled GABA receptor binding Binding to a G protein-coupled (metabotropic) GABA receptor. tmpzr1t_l9r_go_relaxed.owl GABAB receptor binding|metabotropic GABA receptor binding|metabotropic GABA receptor ligand|G-protein coupled GABA receptor binding molecular_function owl:Class GO:0050811 biolink:NamedThing GABA receptor binding Binding to a gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor. tmpzr1t_l9r_go_relaxed.owl diazepam binding inhibitor activity|4-aminobutanoate receptor binding|gamma-aminobutyric acid receptor binding|4-aminobutyrate receptor binding molecular_function owl:Class GO:0048684 biolink:NamedThing positive regulation of collateral sprouting of intact axon in response to injury Any process that activates, maintains or increases the rate of collateral sprouting of an intact axon as a result of injury to an axon. tmpzr1t_l9r_go_relaxed.owl stimulation of collateral sprouting of intact axon in response to injury|up-regulation of collateral sprouting of intact axon in response to injury|upregulation of collateral sprouting of intact axon in response to injury|activation of collateral sprouting of intact axon in response to injury|up regulation of collateral sprouting of intact axon in response to injury biological_process owl:Class GO:0062003 biolink:NamedThing negative regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity Any process that decreases the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-26T13:23:20Z biological_process owl:Class GO:0045540 biolink:NamedThing regulation of cholesterol biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol. tmpzr1t_l9r_go_relaxed.owl regulation of cholesterol biosynthesis|regulation of cholesterol formation|regulation of cholesterol anabolism|regulation of cholesterol synthesis biological_process owl:Class GO:0039645 biolink:NamedThing modulation by virus of host G1/S transition checkpoint Any viral process that modulates the frequency, rate or extent of the host cell G1/S transition checkpoint. tmpzr1t_l9r_go_relaxed.owl G1/S host cell cycle checkpoint dysregulation by virus VZ:880 bf 2012-10-09T15:08:57Z biological_process owl:Class GO:0060153 biolink:NamedThing modulation by virus of host cell cycle Any viral process that modulates the rate or extent of progression through the cell cycle. tmpzr1t_l9r_go_relaxed.owl modulation of host cell cycle by virus|viral process regulating host cell cycle|regulation of host cell cycle by virus|regulation by virus of host cell cycle VZ:1636 biological_process owl:Class GO:0047189 biolink:NamedThing 2,3-diaminopropionate N-oxalyltransferase activity Catalysis of the reaction: 3-amino-L-alanine + oxalyl-CoA = N(3)-oxalyl-L-2,3-diaminopropanoate + CoA. tmpzr1t_l9r_go_relaxed.owl oxalyldiaminopropionate synthase activity|oxalyldiaminopropionic synthase activity|ODAP synthase activity|oxalyl-CoA:L-2,3-diaminopropanoate N3-oxalyltransferase activity|oxalyl-CoA:L-2,3-diaminopropanoate 3-N-oxalyltransferase activity|oxalyl-CoA:L-alpha,beta-diaminopropionic acid oxalyltransferase activity MetaCyc:2.3.1.58-RXN|KEGG_REACTION:R04211|EC:2.3.1.58|RHEA:13465 molecular_function owl:Class GO:1904262 biolink:NamedThing negative regulation of TORC1 signaling Any process that stops, prevents or reduces the frequency, rate or extent of TORC1 signaling. tmpzr1t_l9r_go_relaxed.owl inhibition of TORC1 signaling|downregulation of TORC1 signaling|down regulation of TORC1 signal transduction|downregulation of TORC1 signal transduction|down-regulation of TORC1 signaling|down regulation of TORC1 signaling|inhibition of TORC1 signal transduction|negative regulation of TORC1 signal transduction|down-regulation of TORC1 signal transduction lb 2015-05-27T13:13:04Z biological_process owl:Class GO:0019326 biolink:NamedThing nitrotoluene metabolic process The chemical reactions and pathways involving nitrotoluene, any methylbenzene molecule with NO2 group(s) attached. tmpzr1t_l9r_go_relaxed.owl nitrotoluene metabolism biological_process owl:Class GO:0120196 biolink:NamedThing negative regulation of anther dehiscence Any process that stops, prevents, or reduces the frequency, rate or extent of anther dehiscence. tmpzr1t_l9r_go_relaxed.owl krc 2019-04-09T22:03:16Z biological_process owl:Class GO:0019677 biolink:NamedThing NAD catabolic process The chemical reactions and pathways resulting in the breakdown of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; catabolism may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl reduced NAD catabolism|oxidized NAD catabolism|NAD catabolism|reduced nicotinamide adenine dinucleotide catabolic process|NAD degradation|NAD (reduced) catabolism|NADH catabolic process|nicotinamide adenine dinucleotide catabolism|oxidized NAD catabolic process|reduced nicotinamide adenine dinucleotide catabolism|NAD (reduced) catabolic process|oxidized nicotinamide adenine dinucleotide catabolism|NAD (oxidized) catabolic process|NAD breakdown|oxidized nicotinamide adenine dinucleotide catabolic process|reduced NAD catabolic process|nicotinamide adenine dinucleotide catabolic process|NAD (oxidized) catabolism|NADH catabolism GO:0006737 biological_process owl:Class GO:0046496 biolink:NamedThing nicotinamide nucleotide metabolic process The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide nucleotide metabolism biological_process owl:Class GO:0045882 biolink:NamedThing negative regulation of sulfur utilization Any process that stops, prevents, or reduces the frequency, rate or extent of sulfur utilization. tmpzr1t_l9r_go_relaxed.owl downregulation of sulfur utilization|inhibition of sulfur utilization|negative regulation of sulphur utilization|down-regulation of sulfur utilization|down regulation of sulfur utilization biological_process owl:Class GO:0006792 biolink:NamedThing regulation of sulfur utilization Any process that modulates the frequency, rate or extent of sulfur utilization. tmpzr1t_l9r_go_relaxed.owl regulation of sulphur utilization biological_process owl:Class GO:0098621 biolink:NamedThing phosphoseryl-selenocysteinyl-tRNA selenium transferase activity Catalysis of the reaction: O-phosphoseryl-tRNA(Sec) + selenophosphoric acid + H2O => L-selenocysteinyl-tRNA(Sec) + 2 phosphoric acid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408555|RHEA:25041|EC:2.9.1.2 molecular_function owl:Class GO:0016785 biolink:NamedThing selenotransferase activity Catalysis of the transfer of a selenium-containing group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring selenium-containing groups https://github.com/geneontology/go-ontology/issues/20486 EC:2.9.1.- GO:0016786 molecular_function owl:Class GO:0106372 biolink:NamedThing primary fluorescent dioxobilin-type chlorophyll catabolite methylesterase activity Catalysis of the reaction: H2O + primary fluorescent dioxobilin-type chlorophyll catabolite = H+ + methanol + O13(4)-desmethyl pFCC. tmpzr1t_l9r_go_relaxed.owl hjd 2021-04-01T16:53:38Z molecular_function owl:Class GO:0031270 biolink:NamedThing pseudopodium retraction The myosin-based contraction and retraction of a pseudopodium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031268 biolink:NamedThing pseudopodium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pseudopodium, a temporary protrusion or retractile process of a cell, associated with cellular movement. tmpzr1t_l9r_go_relaxed.owl pseudopodium organization and biogenesis|pseudopodium organisation biological_process owl:Class GO:0016612 biolink:NamedThing molybdenum-iron nitrogenase complex An enzyme complex containing a molybdenum-iron cluster found in many species. It is composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase, the molybdenum-iron protein, is tetrameric with an alpha2-beta2 structure, and nitrogenase reductase is a homodimer. tmpzr1t_l9r_go_relaxed.owl molybdenum-iron nitrogenase activity cellular_component owl:Class GO:1905037 biolink:NamedThing autophagosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole organization|initial autophagic vacuole organization bf 2016-03-08T14:18:10Z biological_process owl:Class GO:0006693 biolink:NamedThing prostaglandin metabolic process The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities. tmpzr1t_l9r_go_relaxed.owl prostaglandin metabolism biological_process owl:Class GO:0006692 biolink:NamedThing prostanoid metabolic process The chemical reactions and pathways involving prostanoids, any compound based on or derived from the prostanoate structure. tmpzr1t_l9r_go_relaxed.owl prostanoid metabolism biological_process owl:Class GO:0015851 biolink:NamedThing nucleobase transport The directed movement of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl nucleobase transmembrane transport biological_process owl:Class GO:0031510 biolink:NamedThing SUMO activating enzyme complex A conserved heterodimeric complex with SUMO activating enzyme activity. tmpzr1t_l9r_go_relaxed.owl SAE|SUMO E1 activator enzyme complex cellular_component owl:Class GO:0018054 biolink:NamedThing peptidyl-lysine biotinylation The covalent modification of peptidyl-lysine by biotin to form peptidyl-N6-biotinyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0117 biological_process owl:Class GO:0010669 biolink:NamedThing epithelial structure maintenance A tissue homeostatic process required for the maintenance of epithelial structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904086 biolink:NamedThing regulation of epiboly involved in gastrulation with mouth forming second Any process that modulates the frequency, rate or extent of epiboly involved in gastrulation with mouth forming second. tmpzr1t_l9r_go_relaxed.owl dos 2015-03-25T11:17:34Z biological_process owl:Class GO:2000420 biolink:NamedThing negative regulation of eosinophil extravasation Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:47:18Z biological_process owl:Class GO:0034038 biolink:NamedThing deoxyhypusine synthase activity Catalysis of the reaction: [eIF5A-precursor]-lysine + spermidine = [eIF5A-precursor]-deoxyhypusine + propane-1,3-diamine. Four sub-reactions have been identified,in which the intermediates remain tightly associated with the enzyme: spermidine + NAD+ = dehydrospermidine + NADH; dehydrospermidine + [enzyme]-lysine = N-(4-aminobutylidene)-[enzyme]-lysine + propane-1,3-diamine; N-(4-aminobutylidene)-[enzyme]-lysine + [eIF5A-precursor]-lysine = N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + [enzyme]-lysine; N-(4-aminobutylidene)-[eIF5A-precursor]-lysine + NADH + H+ = [eIF5A-precursor]-deoxyhypusine + NAD+. tmpzr1t_l9r_go_relaxed.owl spermidine:eIF5A-lysine 4-aminobutyltransferase (propane-1,3-diamine-forming) activity|eIF-5A-deoxyhypusine synthase activity|eIF5A-precursor-lysine:spermidine 4-aminobutyltransferase (propane-1,3-diamine-forming) activity Reactome:R-HSA-204617|EC:2.5.1.46|RHEA:33299|MetaCyc:2.5.1.46-RXN|Reactome:R-HSA-204647 Note that this term is equivalent to the obsolete molecular function term 'deoxyhypusine synthase activity ; GO:0004171' and corresponds closely to the biological process term 'deoxyhypusine biosynthetic process from spermidine, using deoxyhypusine synthase ; GO:0050983'. molecular_function owl:Class GO:0106026 biolink:NamedThing Gly-tRNA(Ala) hydrolase activity Catalysis of the hydrolysis of misacylated Gly-tRNA(Ala). tmpzr1t_l9r_go_relaxed.owl hjd 2017-06-16T17:13:33Z molecular_function owl:Class GO:1900207 biolink:NamedThing negative regulation of pronephric nephron tubule development Any process that stops, prevents or reduces the frequency, rate or extent of pronephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl down regulation of pronephric nephron tubule development|down-regulation of pronephric nephron tubule development|inhibition of pronephric nephron tubule development|downregulation of pronephric nephron tubule development bf 2012-03-22T09:23:23Z biological_process owl:Class GO:1905097 biolink:NamedThing regulation of guanyl-nucleotide exchange factor activity Any process that modulates the frequency, rate or extent of guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl regulation of GDS|regulation of guanyl-nucleotide release factor activity|regulation of GNRP|regulation of GEF|regulation of guanyl-nucleotide releasing factor|regulation of GDP-dissociation stimulator activity https://github.com/geneontology/go-ontology/issues/18750 sl 2016-03-31T16:09:35Z biological_process owl:Class GO:0043087 biolink:NamedThing regulation of GTPase activity Any process that modulates the rate of GTP hydrolysis by a GTPase. tmpzr1t_l9r_go_relaxed.owl regulation of Rap GTPase activity|regulation of Rac GTPase activity|regulation of Ras GTPase activity|regulation of Ral GTPase activity|regulation of Rab GTPase activity|regulation of Rho GTPase activity|regulation of ARF GTPase activity|regulation of Ran GTPase activity|regulation of Cdc42 GTPase activity GO:0032313|GO:0032314|GO:0032317|GO:0032319|GO:0043088|GO:0032318|GO:0032315|GO:0032312|GO:0032316 biological_process owl:Class GO:0072094 biolink:NamedThing metanephric renal vesicle induction Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the metanephric renal vesicle. tmpzr1t_l9r_go_relaxed.owl positive regulation of metanephros formation mah 2010-02-10T01:23:20Z biological_process owl:Class GO:0072216 biolink:NamedThing positive regulation of metanephros development Any process that increases the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T01:40:12Z biological_process owl:Class GO:0005250 biolink:NamedThing A-type (transient outward) potassium channel activity Enables the transmembrane transfer of a potassium ion by an outwardly-rectifying voltage-gated channel that produces a transient outward current upon a step change in membrane potential. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5577234 molecular_function owl:Class GO:0032753 biolink:NamedThing positive regulation of interleukin-4 production Any process that activates or increases the frequency, rate, or extent of interleukin-4 production. tmpzr1t_l9r_go_relaxed.owl upregulation of interleukin-4 production|activation of interleukin-4 production|positive regulation of interleukin-4 secretion|up-regulation of interleukin-4 production|positive regulation of IL-4 production|stimulation of interleukin-4 production|positive regulation of interleukin-4 biosynthetic process|up regulation of interleukin-4 production GO:0045404|GO:0150135 biological_process owl:Class GO:1990906 biolink:NamedThing accessory outer segment A cilium-like cell projection emanating from the inner segment and running alongside the outer segment of photoreceptors. tmpzr1t_l9r_go_relaxed.owl dph 2015-11-24T13:56:06Z cellular_component owl:Class GO:0031468 biolink:NamedThing nuclear membrane reassembly The reformation of the nuclear membranes following their breakdown in the context of a normal process. tmpzr1t_l9r_go_relaxed.owl nuclear envelope reassembly https://github.com/geneontology/go-ontology/issues/20636 biological_process owl:Class GO:0061864 biolink:NamedThing basement membrane constituent secretion The controlled release of molecules that form the basement membrane, including carbohydrates and glycoproteins by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-07T18:23:39Z biological_process owl:Class GO:0070278 biolink:NamedThing extracellular matrix constituent secretion The controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell. tmpzr1t_l9r_go_relaxed.owl ECM secretion|ECM constituent secretion biological_process owl:Class GO:0043903 biolink:NamedThing regulation of biological process involved in symbiotic interaction Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association. tmpzr1t_l9r_go_relaxed.owl regulation of symbiosis, encompassing mutualism through parasitism|regulation of symbiotic process|regulation of interspecies interactions between organisms https://github.com/geneontology/go-ontology/issues/19028|https://github.com/geneontology/go-ontology/issues/20191 regulation of interspecies interactions between organisms biological_process owl:Class GO:1905746 biolink:NamedThing positive regulation of mRNA cis splicing, via spliceosome Any process that activates or increases the frequency, rate or extent of mRNA cis splicing, via spliceosome. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-07T14:01:52Z biological_process owl:Class GO:0042395 biolink:NamedThing ecdysis, collagen and cuticulin-based cuticle The shedding of the old collagen and cuticulin-based cuticle fragments during the molting cycle. Examples of this process are found in invertebrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022404 biolink:NamedThing molting cycle process A multicellular organismal process involved in the periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061101 biolink:NamedThing neuroendocrine cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a neuroendocrine cell. A neuroendocrine cell is a cell that receives input form a neuron which controls the secretion of an endocrine substance. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-28T09:42:20Z biological_process owl:Class GO:0060563 biolink:NamedThing neuroepithelial cell differentiation The process in which epiblast cells acquire specialized features of neuroepithelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-29T01:50:05Z biological_process owl:Class GO:0070159 biolink:NamedThing mitochondrial threonyl-tRNA aminoacylation The process of coupling threonine to threonyl-tRNA in a mitochondrion, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006435 biolink:NamedThing threonyl-tRNA aminoacylation The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. The threonyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a threonine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061366 biolink:NamedThing behavioral response to chemical pain Any process that results in a change in the behaviour of an organism as a result of a chemical pain stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-21T03:25:01Z biological_process owl:Class GO:0035517 biolink:NamedThing PR-DUB complex A multimeric protein complex that removes monoubiquitin from histone H2A. In Drosophila and mammals, the core of the complex is composed of Calypso/BAP1 and Asx/ASXL1, respectively. tmpzr1t_l9r_go_relaxed.owl Polycomb repressive deubiquitinase complex bf 2010-05-04T04:19:02Z cellular_component owl:Class GO:1900179 biolink:NamedThing positive regulation of aflatoxin biosynthetic process Any process that activates or increases the frequency, rate or extent of aflatoxin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of aflatoxin synthesis|upregulation of aflatoxin biosynthetic process|upregulation of aflatoxin biosynthesis|up-regulation of aflatoxin synthesis|up-regulation of aflatoxin biosynthetic process|upregulation of aflatoxin formation|positive regulation of aflatoxin biosynthesis|positive regulation of aflatoxin synthesis|positive regulation of aflatoxin anabolism|up regulation of aflatoxin formation|activation of aflatoxin biosynthesis|up-regulation of aflatoxin biosynthesis|up-regulation of aflatoxin anabolism|up regulation of aflatoxin synthesis|up regulation of aflatoxin biosynthesis|up regulation of aflatoxin anabolism|upregulation of aflatoxin anabolism|up-regulation of aflatoxin formation|activation of aflatoxin biosynthetic process|activation of aflatoxin formation|up regulation of aflatoxin biosynthetic process|activation of aflatoxin synthesis|activation of aflatoxin anabolism|positive regulation of aflatoxin formation di 2012-03-09T11:23:46Z biological_process owl:Class GO:1901955 biolink:NamedThing negative regulation of retrograde dense core granule transport Any process that stops, prevents or reduces the frequency, rate or extent of retrograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of retrograde dense core granule transport|inhibition of retrograde dense core granule transport|downregulation of retrograde dense core granule transport|down regulation of retrograde dense core granule transport pr 2013-02-19T13:36:47Z biological_process owl:Class GO:0060804 biolink:NamedThing positive regulation of Wnt signaling pathway by BMP signaling pathway A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase in the rate, frequency or extent of a Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of WNT receptor signalling pathway by BMP signalling pathway|positive regulation of WNT receptor signaling pathway by BMP signaling pathway|positive regulation of Wnt-activated signaling pathway by BMP signaling pathway dph 2009-08-06T01:52:48Z biological_process owl:Class GO:0030177 biolink:NamedThing positive regulation of Wnt signaling pathway Any process that activates or increases the frequency, rate or extent of Wnt signal transduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of frizzled signaling pathway|positive regulation of Wnt-activated signaling pathway|up regulation of frizzled signaling pathway|stimulation of Wnt receptor signaling pathway|activation of frizzled signaling pathway|positive regulation of frizzled signalling pathway|positive regulation of frizzled signaling pathway|up regulation of Wnt receptor signaling pathway|positive regulation of Wnt receptor signalling pathway|positive regulation of Wnt receptor signaling pathway|upregulation of frizzled signaling pathway|stimulation of frizzled signaling pathway|up-regulation of Wnt receptor signaling pathway|activation of Wnt receptor signaling pathway|upregulation of Wnt receptor signaling pathway GO:0045811 biological_process owl:Class GO:2000470 biolink:NamedThing positive regulation of peroxidase activity Any process that activates or increases the frequency, rate or extent of peroxidase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of peroxidase reaction|positive regulation of donor:hydrogen-peroxide oxidoreductase activity|positive regulation of oxyperoxidase activity bf 2011-03-08T02:19:25Z biological_process owl:Class GO:0051266 biolink:NamedThing sirohydrochlorin ferrochelatase activity Catalysis of the reaction: siroheme + 2 H+ = Fe(2+) + sirohydrochlorin. tmpzr1t_l9r_go_relaxed.owl Met8P|siroheme ferro-lyase (sirohydrochlorin-forming)|SirB|CysG|sirohydrochlorin ferro-lyase activity|siroheme synthase activity MetaCyc:SIROHEME-FERROCHELAT-RXN|RHEA:24360|EC:4.99.1.4|KEGG_REACTION:R02864 molecular_function owl:Class GO:0036031 biolink:NamedThing recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex The process in which the guanylyltransferase enzyme responsible for adding a 7-methylguanosine cap on pre-mRNA becomes associated with the RNA polymerase II holoenzyme complex and the 5' end of a transcript. tmpzr1t_l9r_go_relaxed.owl recruitment of guanylyltransferase to RNA polymerase II holoenzyme complex|capping enzyme targeting to RNA polymerase II bf 2011-10-24T10:56:46Z biological_process owl:Class GO:0003707 biolink:NamedThing steroid hormone receptor activity Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function. tmpzr1t_l9r_go_relaxed.owl Some steroid hormone receptors reside in the plasma membrane and signal through second messengers or other intracellular signal transduction pathways. For steroid hormone receptors that act in the nucleus to regulate transcription, consider also annotating to the terms: nuclear receptor activity ; GO:0004879' or nuclear receptor transcription coactivator activity ; GO:0030374'. molecular_function owl:Class GO:0035254 biolink:NamedThing glutamate receptor binding Binding to a glutamate receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006203 biolink:NamedThing dGTP catabolic process The chemical reactions and pathways resulting in the breakdown of dGTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl dGTP breakdown|dGTP catabolism|dGTP degradation biological_process owl:Class GO:0075012 biolink:NamedThing negative regulation of germ tube formation Any process that stops, prevents, or reduces the frequency, rate or extent of germ tube formation on or near host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of germ tube formation on or near host biological_process owl:Class GO:2000280 biolink:NamedThing regulation of root development Any process that modulates the frequency, rate or extent of root development. tmpzr1t_l9r_go_relaxed.owl dhl 2010-12-08T09:30:21Z biological_process owl:Class GO:0033493 biolink:NamedThing esculetin biosynthetic process The chemical reactions and pathways resulting in the formation of esculetin, 6,7-dihydroxycoumarin. tmpzr1t_l9r_go_relaxed.owl esculetin anabolism|esculetin synthesis|esculetin formation|esculetin biosynthesis MetaCyc:PWY-5349 biological_process owl:Class GO:0009805 biolink:NamedThing coumarin biosynthetic process The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids. tmpzr1t_l9r_go_relaxed.owl coumarin formation|coumarin synthesis|coumarin biosynthesis|coumarin anabolism MetaCyc:PWY-5176 biological_process owl:Class GO:0047563 biolink:NamedThing 3-hydroxybenzoate 2-monooxygenase activity Catalysis of the reaction: 3-hydroxybenzoate + AH(2) + O(2) = 2,3-dihydroxybenzoate + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3-HBA-2-hydroxylase activity|3-hydroxybenzoate 2-hydroxylase activity|3-hydroxybenzoate,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating) KEGG_REACTION:R01508|RHEA:14193|EC:1.14.99.23|MetaCyc:3-HYDROXYBENZOATE-2-MONOOXYGENASE-RXN molecular_function owl:Class GO:0031632 biolink:NamedThing positive regulation of synaptic vesicle fusion to presynaptic active zone membrane Any process that activates or increases the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of synaptic vesicle fusion to presynaptic active zone membrane|activation of synaptic vesicle fusion to presynaptic membrane|negative regulation of synaptic vesicle fusion to presynaptic membrane|up regulation of synaptic vesicle fusion to presynaptic active zone membrane|up regulation of synaptic vesicle fusion to presynaptic membrane|positive regulation of synaptic vesicle fusion to pre-synaptic membrane|up-regulation of synaptic vesicle fusion to presynaptic membrane|upregulation of synaptic vesicle fusion to presynaptic membrane|stimulation of synaptic vesicle fusion to presynaptic membrane biological_process owl:Class GO:1902086 biolink:NamedThing fumagillin biosynthetic process The chemical reactions and pathways resulting in the formation of fumagillin. tmpzr1t_l9r_go_relaxed.owl fumagillin biosynthesis|fumagillin formation|fumagillin anabolism|fumagillin synthesis di 2013-04-25T14:00:50Z biological_process owl:Class GO:0033881 biolink:NamedThing bile-acid-CoA hydrolase activity Catalysis of the reaction: deoxycholoyl-CoA + H(2)O = CoA + deoxycholate + H(+). tmpzr1t_l9r_go_relaxed.owl deoxycholoyl-CoA hydrolase activity|bile acid-coenzyme A hydrolase activity RHEA:17693|EC:3.1.2.26|MetaCyc:BACOAHYDRO-RXN|KEGG_REACTION:R07295 molecular_function owl:Class GO:0016289 biolink:NamedThing CoA hydrolase activity Catalysis of the reaction: X-CoA + H2O = X + CoA; X may be any group. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-193385 molecular_function owl:Class GO:0038101 biolink:NamedThing sequestering of nodal from receptor via nodal binding Binding to a nodal protein in the extracellular region, and inhibiting nodal signaling by preventing nodal from binding to its cell surface receptor. tmpzr1t_l9r_go_relaxed.owl extracellular regulation of nodal|binding to and sequestering nodal|nodal antagonist activity bf 2012-02-17T11:21:22Z biological_process owl:Class GO:0039600 biolink:NamedThing induction by virus of host endonucleolytic cleavage-dependent mRNA catabolic process The process in which a virus increases the frequency, rate or extent of the breakdown of host nuclear-transcribed mRNAs that begins with endonucleolytic cleavage (by either a host or a viral RNAse) to generate unprotected ends. tmpzr1t_l9r_go_relaxed.owl induction by virus of host nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay|induction by virus of host endonucleolytic cleavage-dependent mRNA decay Some viruses utilize a host RNase to induce endonucleolytic cleavage of template mRNAs (e.g. the NSP1 protein of SARS coronavirus); for these consider instead annotating to the child term 'induction by virus of host endoribonuclease activity ; GO:0039597'. Other viral proteins act as endonucleases themselves to cleave mRNA and then rely on the host degradation machinery to clear the resulting fragments (e.g. gamma herpesvirus SOX protein); for these cases consider instead annotating to the child term 'endoribonuclease activity involved in viral induction of host mRNA catabolic process ; GO:0039594'. bf 2012-07-04T05:23:43Z biological_process owl:Class GO:0097676 biolink:NamedThing histone H3-K36 dimethylation The modification of histone H3 by addition of two methyl groups to lysine at position 36 of the histone. tmpzr1t_l9r_go_relaxed.owl pr 2014-11-04T10:38:05Z biological_process owl:Class GO:0009861 biolink:NamedThing jasmonic acid and ethylene-dependent systemic resistance The jasmonic acid and ethylene (ethene) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. tmpzr1t_l9r_go_relaxed.owl jasmonic acid/ethylene-dependent systemic resistance|jasmonic acid and ethene-dependent systemic resistance biological_process owl:Class GO:0007162 biolink:NamedThing negative regulation of cell adhesion Any process that stops, prevents, or reduces the frequency, rate or extent of cell adhesion. tmpzr1t_l9r_go_relaxed.owl cell adhesion receptor inhibitor activity|down-regulation of cell adhesion|inhibition of cell adhesion|down regulation of cell adhesion|downregulation of cell adhesion biological_process owl:Class GO:0015530 biolink:NamedThing shikimate transmembrane transporter activity Enables the transfer of shikimate from one side of a membrane to the other. Shikimate is an important intermediate in the biosynthesis of aromatic amino acids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071286 biolink:NamedThing cellular response to magnesium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:05:50Z biological_process owl:Class GO:0032026 biolink:NamedThing response to magnesium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090641 biolink:NamedThing microsporidian-type endospore The middle layer in a microsporidian spore wall that lies under the exospore and outside the plasma membrane, containing chitin and proteins. tmpzr1t_l9r_go_relaxed.owl Microsporidian biology uses the term endospore differently than GO:0043593 endospore coat which is for a spore formed inside of another cell. Microsporidian endospore refers to the inner layer of the spore wall itself. tb 2015-05-04T14:17:06Z cellular_component owl:Class GO:1901848 biolink:NamedThing nicotinate catabolic process The chemical reactions and pathways resulting in the breakdown of nicotinate. tmpzr1t_l9r_go_relaxed.owl nicotinate catabolism|nicotinate breakdown|nicotinate degradation yaf 2013-01-28T11:23:52Z biological_process owl:Class GO:0046893 biolink:NamedThing iron incorporation into hydrogenase diiron subcluster via L-cysteine ligation The incorporation of iron into an L-cysteinyl diiron subcluster, found in Fe-hydrogenase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0334 biological_process owl:Class GO:0006667 biolink:NamedThing sphinganine metabolic process The chemical reactions and pathways involving sphinganine, D-erythro-2-amino-1,3-octadecanediol. tmpzr1t_l9r_go_relaxed.owl dihydrosphingosine metabolic process|sphinganine metabolism|dihydrosphingosine metabolism biological_process owl:Class GO:0034311 biolink:NamedThing diol metabolic process The chemical reactions and pathways involving a diol, a compound that contains two hydroxy groups, generally assumed to be, but not necessarily, alcoholic. tmpzr1t_l9r_go_relaxed.owl dihydric alcohol metabolic process|diol metabolism biological_process owl:Class GO:0018004 biolink:NamedThing N-terminal protein formylation The formylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007249 biolink:NamedThing I-kappaB kinase/NF-kappaB signaling The process in which a signal is passed on to downstream components within the cell through the I-kappaB-kinase (IKK)-dependent activation of NF-kappaB. The cascade begins with activation of a trimeric IKK complex (consisting of catalytic kinase subunits IKKalpha and/or IKKbeta, and the regulatory scaffold protein NEMO) and ends with the regulation of transcription of target genes by NF-kappaB. In a resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. tmpzr1t_l9r_go_relaxed.owl NF-kappaB cascade|activation of the inhibitor of kappa kinase|I-kappaB kinase/NF-kappaB cascade|I-kappaB kinase/NF-kappaB signal transduction|p50-dependent NF-kappaB signaling|canonical NF-kappaB signaling cascade biological_process owl:Class GO:0016973 biolink:NamedThing poly(A)+ mRNA export from nucleus The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl poly(A)+ mRNA transport from nucleus to cytoplasm|poly(A) mRNA export from nucleus|poly(A)+ mRNA export out of nucleus|poly(A)+ mRNA export from cell nucleus|poly(A)+ mRNA-nucleus export|polyadenylated mRNA export from nucleus biological_process owl:Class GO:0010417 biolink:NamedThing glucuronoxylan biosynthetic process The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues. tmpzr1t_l9r_go_relaxed.owl glucuronoxylan biosynthesis|glucuronoxylan formation|glucuronoxylan synthesis|glucuronoxylan anabolism biological_process owl:Class GO:0010413 biolink:NamedThing glucuronoxylan metabolic process The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units. tmpzr1t_l9r_go_relaxed.owl glucuronoxylan metabolism biological_process owl:Class GO:0097725 biolink:NamedThing histone H3-K79 dimethylation The modification of histone H3 by addition of two methyl groups to lysine at position 79 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 K79 dimethylation|histone lysine H3 K79 dimethylation pr 2016-09-15T12:41:13Z biological_process owl:Class GO:0072291 biolink:NamedThing epithelial cell migration involved in metanephric distal tubule morphogenesis The orderly movement of epithelial cells within a renal tubule that contributes to metanephric distal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:53:37Z biological_process owl:Class GO:0060656 biolink:NamedThing regulation of branching involved in mammary cord morphogenesis by fat precursor cell-epithelial cell signaling Any process that modulates the rate, frequency, or extent of branching of the mammary gland cord as a result of a signal being created by a mammary fat precursor cell and its subsequent reception and interpretation by a mammary cord epithelial cell. tmpzr1t_l9r_go_relaxed.owl regulation of branching involved in mammary cord morphogenesis by fat precursor cell-epithelial cell signalling dph 2009-05-29T09:34:31Z biological_process owl:Class GO:0031131 biolink:NamedThing reception of an inductive signal The process in which one cell or group of cells receives, transduces, and responds to a signal generated by another cell or group of cells of different ancestry and developmental potential, such that the recipient cell(s) undergo a developmental change. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055013 biolink:NamedThing cardiac muscle cell development The process whose specific outcome is the progression of a cardiac muscle cell over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl cardiomyocyte cell development|cardiac muscle fibre development|cardiac muscle fiber development|heart muscle fiber development|heart muscle cell development GO:0048739 biological_process owl:Class GO:0150057 biolink:NamedThing amylin receptor complex 2 A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 2. Amylin receptor complex 2 (AMY2) also serves as a receptor for adrenomedullin (AM/ADM). tmpzr1t_l9r_go_relaxed.owl AMY2 complex bc 2018-06-21T10:51:35Z cellular_component owl:Class GO:1903440 biolink:NamedThing amylin receptor complex A protein complex which is capable of amylin receptor activity. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-16T13:25:20Z cellular_component owl:Class GO:0060110 biolink:NamedThing basal layer of collagen and cuticulin-based cuticle extracellular matrix The layer of cuticle most closely apposed to the hypodermal cells. The morphology of the basal layer varies with life stage. In adult C. elegans animals, the basal layers is comprised of three sublayers: two fibrous layers whose fibers run in clockwise and counter-clockwise directions meeting one another at a 60 degree angle, and an amorphous basal layer that lies underneath the fibrous layers and directly contacts the hypodermis. In C. elegans dauer and L1 larval stage animals, the basal layer is characterized by a striated pattern that appears to derive from interwoven laminae. An example of this component is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl basal layer of collagen and cuticulin-based exoskeleton extracellular matrix cellular_component owl:Class GO:0036194 biolink:NamedThing muscle cell projection A prolongation or process extending from a muscle cell. A muscle cell is a mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. tmpzr1t_l9r_go_relaxed.owl muscle arm|myocyte projection|myopodia bf 2012-04-20T10:20:47Z cellular_component owl:Class GO:0106116 biolink:NamedThing positive regulation of mitotic cohesin dsDNA (leading strand) loading Any process that activates or increases the frequency, rate or extent of mitotic cohesin dsDNA (leading strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:52:21Z biological_process owl:Class GO:1904932 biolink:NamedThing negative regulation of cartilage condensation Any process that stops, prevents or reduces the frequency, rate or extent of cartilage condensation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cartilage condensation|down regulation of cartilage condensation|downregulation of cartilage condensation|inhibition of cartilage condensation mr 2016-01-29T18:13:39Z biological_process owl:Class GO:0070367 biolink:NamedThing negative regulation of hepatocyte differentiation Any process that stops or decreases the rate or extent of hepatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of hepatocyte differentiation|down regulation of hepatocyte differentiation|negative regulation of liver cell differentiation|down-regulation of hepatocyte differentiation|downregulation of hepatocyte differentiation biological_process owl:Class GO:0042160 biolink:NamedThing lipoprotein modification The chemical reactions and pathways resulting in the covalent alteration of one or more amino acid or lipid residues occurring in a lipoprotein, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032402 biolink:NamedThing melanosome transport The directed movement of melanosomes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032401 biolink:NamedThing establishment of melanosome localization The directed movement of a melanosome to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of melanosome localisation biological_process owl:Class GO:0034001 biolink:NamedThing chondroitin-sulfate-ABC exolyase activity Catalysis of the exolytic cleavage of disaccharide residues from the non-reducing ends of both polymeric chondroitin sulfates and their oligosaccharide fragments. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate ABC exoeliminase activity|chondroitin sulfate ABC exolyase activity|chondroitinase activity|chondroitinase ABC activity|chondroitin sulfate ABC lyase activity|ChS ABC lyase II activity|chondroitin ABC eliminase activity|ChS ABC lyase activity MetaCyc:4.2.2.21-RXN|EC:4.2.2.21 molecular_function owl:Class GO:0047486 biolink:NamedThing chondroitin ABC lyase activity Catalysis of the eliminative degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucuronosyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043372 biolink:NamedThing positive regulation of CD4-positive, alpha-beta T cell differentiation Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of CD4-positive, alpha beta T cell differentiation|up-regulation of CD4-positive, alpha beta T cell differentiation|positive regulation of CD4-positive, alpha beta T cell differentiation|stimulation of CD4-positive, alpha beta T cell differentiation|positive regulation of CD4-positive, alpha beta T-lymphocyte differentiation|upregulation of CD4-positive, alpha beta T cell differentiation|positive regulation of CD4-positive, alpha beta T cell development|positive regulation of CD4-positive T-lymphocyte differentiation|positive regulation of CD4-positive T lymphocyte differentiation|positive regulation of CD4-positive, alpha beta T lymphocyte differentiation|positive regulation of CD4-positive, alpha beta T-cell differentiation|activation of CD4-positive, alpha beta T cell differentiation|positive regulation of CD4-positive T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050374 biolink:NamedThing UDP-galacturonate decarboxylase activity Catalysis of the reaction: H(+) + UDP-alpha-D-galacturonate = CO(2) + UDP-L-arabinose. tmpzr1t_l9r_go_relaxed.owl UDP-galacturonic acid decarboxylase activity|UDPGalUA carboxy lyase activity|UDPgalacturonate decarboxylase activity|UDP-D-galacturonate carboxy-lyase activity|UDP-D-galacturonate carboxy-lyase (UDP-L-arabinose-forming) EC:4.1.1.67|KEGG_REACTION:R02636|MetaCyc:UDP-GALACTURONATE-DECARBOXYLASE-RXN|RHEA:19725 molecular_function owl:Class GO:0002651 biolink:NamedThing positive regulation of tolerance induction to self antigen Any process that activates or increases the frequency, rate, or extent of tolerance induction to self antigen. tmpzr1t_l9r_go_relaxed.owl activation of tolerance induction to self antigen|up regulation of tolerance induction to self antigen|stimulation of tolerance induction to self antigen|upregulation of tolerance induction to self antigen|up-regulation of tolerance induction to self antigen biological_process owl:Class GO:0002649 biolink:NamedThing regulation of tolerance induction to self antigen Any process that modulates the frequency, rate, or extent of tolerance induction to self antigen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902374 biolink:NamedThing regulation of rRNA catabolic process Any process that modulates the frequency, rate or extent of rRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of rRNA catabolism|regulation of rRNA degradation|regulation of rRNA breakdown bf 2013-08-22T15:20:59Z biological_process owl:Class GO:0018595 biolink:NamedThing alpha-pinene monooxygenase activity Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + pinocarveol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0716|RHEA:32891|EC:1.14.13.155 molecular_function owl:Class GO:1990604 biolink:NamedThing IRE1-TRAF2-ASK1 complex A protein complex of the endoplasmic reticulum membrane that consists of IRE1 (Inositol-requiring enzyme-1), TRAF2 (TNF receptor-associated factor 2) and ASK1 (Apoptosis signal-regulating kinase 1, a MAP3K). tmpzr1t_l9r_go_relaxed.owl ERN1-TRAF2-ASK1 complex bf 2015-01-13T15:03:04Z cellular_component owl:Class GO:0102386 biolink:NamedThing phenylacetaldehyde reductase activity Catalysis of the reaction: 2-phenylethanol + NADP = phenylacetaldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13536 molecular_function owl:Class GO:0018270 biolink:NamedThing GPI anchor biosynthetic process via N-alanyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-alanine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of an alanyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor formation via N-alanyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-alanyl-glycosylphosphatidylinositolethanolamine|GPI anchor synthesis via N-alanyl-glycosylphosphatidylinositolethanolamine RESID:AA0163 biological_process owl:Class GO:0044038 biolink:NamedThing cell wall macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule destined to form part of a cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall macromolecule biosynthesis|cell wall macromolecule synthesis|cellular cell wall macromolecule biosynthetic process|cell wall macromolecule biosynthetic process at cellular level|cell wall macromolecule anabolism biological_process owl:Class GO:0044036 biolink:NamedThing cell wall macromolecule metabolic process The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl cellular cell wall macromolecule metabolism|cellular cell wall macromolecule metabolic process GO:0010382 biological_process owl:Class GO:1905382 biolink:NamedThing positive regulation of snRNA transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of snRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl up-regulation of snRNA transcription from RNA polymerase II promoter|positive regulation of snRNA transcription from RNA polymerase II promoter|activation of snRNA transcription from Pol II promoter|up regulation of snRNA transcription from RNA polymerase II promoter|up regulation of snRNA transcription from Pol II promoter|upregulation of snRNA transcription from RNA polymerase II promoter|positive regulation of snRNA transcription from Pol II promoter|activation of snRNA transcription from RNA polymerase II promoter|up-regulation of snRNA transcription from Pol II promoter|upregulation of snRNA transcription from Pol II promoter An example of this is GTF2A1 in human (UniProt symbol P52655) in PMID:10022900 (inferred from direct assay). bhm 2016-08-18T13:39:34Z biological_process owl:Class GO:0048536 biolink:NamedThing spleen development The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902301 biolink:NamedThing galactarate transmembrane transporter activity Enables the transfer of galactaric acid anion (galactarate) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl D-galactarate transmembrane transporter activity|galactaric acid anion transmembrane transporter activity pr 2013-07-16T07:26:36Z GO:0042877 molecular_function owl:Class GO:1902743 biolink:NamedThing regulation of lamellipodium organization Any process that modulates the frequency, rate or extent of lamellipodium organization. tmpzr1t_l9r_go_relaxed.owl als 2014-02-28T16:27:30Z biological_process owl:Class GO:0009852 biolink:NamedThing auxin catabolic process The chemical reactions and pathways resulting in the breakdown of auxins, a group of plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl auxin catabolism|auxin degradation|auxin breakdown biological_process owl:Class GO:0047424 biolink:NamedThing methylenediurea deaminase activity Catalysis of the reaction: 2 H2O + methylenediurea = CO2 + 2 NH3 + N-hydroxymethylurea. tmpzr1t_l9r_go_relaxed.owl methylenediurea aminohydrolase activity|methylenediurease activity RHEA:15929|MetaCyc:3.5.3.21-RXN|EC:3.5.3.21 molecular_function owl:Class GO:0033014 biolink:NamedThing tetrapyrrole biosynthetic process The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. tmpzr1t_l9r_go_relaxed.owl tetrapyrrole anabolism|tetrapyrrole synthesis|tetrapyrrole biosynthesis|tetrapyrrole formation biological_process owl:Class GO:0071452 biolink:NamedThing cellular response to singlet oxygen Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:39:46Z biological_process owl:Class GO:0000304 biolink:NamedThing response to singlet oxygen Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032547 biolink:NamedThing purine deoxyribonucleoside binding Binding to a purine deoxyribonucleoside, a compound consisting of a purine base linked to deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001883 biolink:NamedThing purine nucleoside binding Binding to a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000258 biolink:NamedThing negative regulation of protein activation cascade Any process that stops, prevents or reduces the frequency, rate or extent of protein activation cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein activitory cascade|negative regulation of protein activation pathway mah 2010-11-23T11:33:51Z biological_process owl:Class GO:2000257 biolink:NamedThing regulation of protein activation cascade Any process that modulates the frequency, rate or extent of protein activation cascade. tmpzr1t_l9r_go_relaxed.owl regulation of protein activitory cascade|regulation of protein activation pathway mah 2010-11-23T11:33:46Z biological_process owl:Class GO:0015801 biolink:NamedThing aromatic amino acid transport The directed movement of aromatic amino acids, amino acids with aromatic ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019508 biolink:NamedThing 2,5-dihydroxypyridine catabolic process to fumarate The chemical reactions and pathways resulting in the breakdown of 2,5-dihydroxypyridine to form fumarate. 2,5-dihydroxypyridine is dioxygenated to give maleamate and formate; the maleamate from this reaction is then converted to maleate, which is then isomerized to fumurate. tmpzr1t_l9r_go_relaxed.owl 2,5-dihydroxypyridine degradation to fumarate|2,5-dihydroxypyridine utilization|2,5-dihydroxypyridine breakdown to fumarate|pyridine-2,5-diol catabolic process to fumarate|maleamate pathway MetaCyc:PWY-722 biological_process owl:Class GO:0051166 biolink:NamedThing 2,5-dihydroxypyridine catabolic process The chemical reactions and pathways resulting in the breakdown of 2,5-dihydroxypyridine. tmpzr1t_l9r_go_relaxed.owl 2,5-dihydroxypyridine degradation|2,5-dihydroxypyridine breakdown|2,5-dihydroxypyridine catabolism|pyridine-2,5-diol catabolic process biological_process owl:Class GO:0071691 biolink:NamedThing cardiac muscle thin filament assembly The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in cardiac muscle. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T03:57:01Z biological_process owl:Class GO:0034002 biolink:NamedThing (R)-limonene synthase activity Catalysis of the reaction: geranyl diphosphate = (4R)-limonene + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl-diphosphate diphosphate-lyase [cyclizing, (+)-(4R)-limonene-forming] activity|(+)-limonene synthase activity|geranyldiphosphate diphosphate lyase [(+)-(R)-limonene-forming] activity KEGG_REACTION:R06120|RHEA:10940|EC:4.2.3.20|MetaCyc:4.2.3.20-RXN molecular_function owl:Class GO:1903188 biolink:NamedThing positive regulation of vitellogenesis Any process that activates or increases the frequency, rate or extent of vitellogenesis. tmpzr1t_l9r_go_relaxed.owl activation of yolk production|upregulation of yolk production|activation of vitellogenesis|positive regulation of yolk production|upregulation of vitellogenesis|up regulation of vitellogenesis|up regulation of yolk production|up-regulation of yolk production|up-regulation of vitellogenesis mr 2014-07-14T19:28:12Z biological_process owl:Class GO:0052646 biolink:NamedThing alditol phosphate metabolic process The chemical reactions and pathways involving alditol phosphates, any phosphorylated polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. tmpzr1t_l9r_go_relaxed.owl alditol phosphate metabolism ai 2010-09-22T04:24:21Z biological_process owl:Class GO:0006264 biolink:NamedThing mitochondrial DNA replication The process in which new strands of DNA are synthesized in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mtDNA replication|replication of mitochondrial DNA|mitochondrial DNA synthesis|mtDNA synthesis biological_process owl:Class GO:0032758 biolink:NamedThing positive regulation of interleukin-9 production Any process that activates or increases the frequency, rate, or extent of interleukin-9 production. tmpzr1t_l9r_go_relaxed.owl up-regulation of interleukin-9 production|positive regulation of IL-9 production|activation of interleukin-9 production|upregulation of interleukin-9 production|stimulation of interleukin-9 production|positive regulation of interleukin-9 biosynthetic process|up regulation of interleukin-9 production GO:0045419 biological_process owl:Class GO:0044345 biolink:NamedThing stromal-epithelial cell signaling involved in prostate gland development The process of transferring information from a stromal cell to an epithelial cell where it is received and interpreted, as part of prostate gland development. tmpzr1t_l9r_go_relaxed.owl stromal-epithelial cell signalling involved in prostate gland development jl 2010-08-25T02:06:34Z biological_process owl:Class GO:0002593 biolink:NamedThing negative regulation of antigen processing and presentation via MHC class Ib Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl downregulation of antigen processing and presentation via MHC class Ib|down-regulation of antigen processing and presentation via MHC class Ib|down regulation of antigen processing and presentation via MHC class Ib|inhibition of antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0043921 biolink:NamedThing modulation by host of viral transcription Any process in which a host organism modulates the frequency, rate or extent of viral transcription. tmpzr1t_l9r_go_relaxed.owl regulation of viral transcription by host|regulation by host of viral transcription biological_process owl:Class GO:0044788 biolink:NamedThing modulation by host of viral process A process in which a host organism modulates the frequency, rate or extent of any of a process being mediated by a virus with which it is infected. tmpzr1t_l9r_go_relaxed.owl jl 2013-06-06T10:50:49Z biological_process owl:Class GO:0071268 biolink:NamedThing homocysteine biosynthetic process The chemical reactions and pathways resulting in the formation of homocysteine, 2-amino-4-sulfanylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl homocysteine biosynthesis|homocysteine formation|homocysteine synthesis|homocysteine anabolism mah 2009-12-09T05:32:48Z biological_process owl:Class GO:0071595 biolink:NamedThing Nem1-Spo7 phosphatase complex A protein serine/threonine phosphatase complex that is involved in nuclear envelope organization, and contains proteins known in budding yeast as Nem1p and Spo7p. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-29T02:17:29Z cellular_component owl:Class GO:0047372 biolink:NamedThing acylglycerol lipase activity Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol. tmpzr1t_l9r_go_relaxed.owl monoglyceridyllipase activity|monoacylglycerol hydrolase activity|monoglyceride lipase activity|monoglyceridase activity|monoglyceride hydrolase activity|fatty acyl monoester lipase activity|monoacylglycerol lipase activity|monoacylglycerolipase activity|glycerol-ester acylhydrolase activity Reactome:R-HSA-426032|Reactome:R-HSA-192422|Reactome:R-HSA-163595|MetaCyc:3.1.1.23-RXN|Reactome:R-HSA-192430|Reactome:R-HSA-192434|Reactome:R-HSA-426043|Reactome:R-HSA-192475|EC:3.1.1.23|RHEA:34019|Reactome:R-HSA-1482543|Reactome:R-HSA-5694462|Reactome:R-HSA-192425 molecular_function owl:Class GO:0008966 biolink:NamedThing phosphoglucosamine mutase activity Catalysis of the reaction: alpha-D-glucosamine 1-phosphate = D-glucosamine 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-glucosamine 1,6-phosphomutase activity|alpha-D-glucosamine 1,6-phosphomutase activity RHEA:23424|MetaCyc:5.4.2.10-RXN|KEGG_REACTION:R02060|EC:5.4.2.10 molecular_function owl:Class GO:0016868 biolink:NamedThing intramolecular transferase activity, phosphotransferases Catalysis of the transfer of a phosphate group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl phosphotransferase activity, with regeneration of donors, apparently catalyzing intramolecular transfers|phosphomutase activity EC:5.4.2.- GO:0016777 molecular_function owl:Class GO:0034392 biolink:NamedThing negative regulation of smooth muscle cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of smooth muscle cell apoptosis|inhibition of smooth muscle cell apoptosis|negative regulation of smooth muscle cell apoptosis|down-regulation of smooth muscle cell apoptosis|negative regulation of SMC apoptosis|downregulation of smooth muscle cell apoptosis biological_process owl:Class GO:0010656 biolink:NamedThing negative regulation of muscle cell apoptotic process Any process that decreases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl negative regulation of muscle cell apoptosis biological_process owl:Class GO:0018287 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl triiron tetrasulfide The incorporation of iron into a 3Fe-4S iron-sulfur cluster via tris-L-cysteinyl triiron tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl triiron tetrasulphide RESID:AA0139 biological_process owl:Class GO:0060335 biolink:NamedThing positive regulation of interferon-gamma-mediated signaling pathway Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interferon-gamma binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of gamma-interferon-mediated signaling pathway|positive regulation of type II IFN-mediated pathway|positive regulation of interferon-gamma-mediated signalling pathway|positive regulation of type II interferon-mediated signaling pathway|positive regulation of immune interferon-mediated signaling pathway biological_process owl:Class GO:0015015 biolink:NamedThing heparan sulfate proteoglycan biosynthetic process, enzymatic modification The modification, often by sulfation, of sugars incorporated into heparan sulfate after polymerization. tmpzr1t_l9r_go_relaxed.owl heparan sulfate proteoglycan anabolism, enzymatic modification|heparan sulfate proteoglycan synthesis, enzymatic modification|heparin proteoglycan biosynthetic process, enzymatic modification|heparan sulphate proteoglycan biosynthesis, enzymatic modification|heparan sulphate proteoglycan biosynthetic process, enzymatic modification|heparan sulfate proteoglycan formation, enzymatic modification biological_process owl:Class GO:0030201 biolink:NamedThing heparan sulfate proteoglycan metabolic process The chemical reactions and pathways involving any proteoglycan containing heparan sulfate, any member of a group of glycosaminoglycans that have repeat units consisting of alternating alpha-(1->4)-linked hexuronic acid and glucosamine residues, the former being a mixture of sulfated and nonsulfated D-glucuronic and L-iduronic acids, and the latter being either sulfated or acetylated on its amino group as well as sulfated on one of its hydroxyl groups. tmpzr1t_l9r_go_relaxed.owl heparan sulfate proteoglycan metabolism|heparin proteoglycan metabolic process|heparan sulphate proteoglycan metabolism|heparan sulphate proteoglycan metabolic process biological_process owl:Class GO:0015369 biolink:NamedThing calcium:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl calcium:hydrogen antiporter activity RHEA:29671|Reactome:R-HSA-8949687 molecular_function owl:Class GO:0005451 biolink:NamedThing monovalent cation:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monovalent cation(out) + H+(in) = monovalent cation(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl monovalent cation:hydrogen antiporter activity Reactome:R-HSA-2889070 molecular_function owl:Class GO:0030523 biolink:NamedThing dihydrolipoamide S-acyltransferase activity Catalysis of the reaction: acyl-CoA + dihydrolipoamide = CoA + S-acyldihydrolipoamide. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.12 molecular_function owl:Class GO:0010542 biolink:NamedThing nitrate efflux transmembrane transporter activity Enables the transfer of nitrate from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015562 biolink:NamedThing efflux transmembrane transporter activity Enables the transfer of a specific substance or related group of substances from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl efflux transporter activity|efflux permease activity|monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity molecular_function owl:Class GO:0033377 biolink:NamedThing maintenance of protein location in T cell secretory granule A process in which a protein is maintained in a secretory granule in a T cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protein localization in T cell secretory granule|maintenance of protein localization in T-cell secretory granule|maintenance of protein localization in T lymphocyte secretory granule|maintenance of protein localization in T-lymphocyte secretory granule biological_process owl:Class GO:0106112 biolink:NamedThing negative regulation of mitotic cohesin ssDNA (lagging strand) loading Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cohesin ssDNA (lagging strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:41:50Z biological_process owl:Class GO:0002112 biolink:NamedThing interleukin-33 receptor binding Binding to an interleukin-33 receptor. tmpzr1t_l9r_go_relaxed.owl IL-33|interleukin-33 receptor ligand molecular_function owl:Class GO:0071578 biolink:NamedThing zinc ion import across plasma membrane The directed movement of zinc(2+) ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl zinc ion transmembrane import|high-affinity zinc II ion transport|zinc uptake|zinc import|high-affinity zinc II ion transmembrane import|zinc II ion plasma membrane import|zinc II ion transmembrane import|low-affinity zinc II ion transport jl 2010-01-28T02:22:02Z GO:0006831|GO:0044749|GO:0006830|GO:0140160 biological_process owl:Class GO:1901455 biolink:NamedThing negative regulation of response to toluene Any process that stops, prevents or reduces the frequency, rate or extent of response to toluene. tmpzr1t_l9r_go_relaxed.owl down regulation of response to toluene|inhibition of response to toluene|down-regulation of response to toluene|downregulation of response to toluene tt 2012-10-02T14:23:28Z biological_process owl:Class GO:0047630 biolink:NamedThing ADP-phosphoglycerate phosphatase activity Catalysis of the reaction: 3-ADP-2-phosphoglycerate + H(2)O = 3-ADP-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl 3-(ADP)-2-phosphoglycerate phosphohydrolase activity|ADPphosphoglycerate phosphatase activity|adenosine diphosphate phosphoglycerate phosphatase activity KEGG_REACTION:R03969|RHEA:15861|MetaCyc:ADP-PHOSPHOGLYCERATE-PHOSPHATASE-RXN|EC:3.1.3.28 molecular_function owl:Class GO:0102576 biolink:NamedThing 3-oxo-palmitoyl-ACP hydrolase activity Catalysis of the reaction: H2O + a 3-oxo-palmitoyl-[acp] = 3-oxopalmitic acid + H+ + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15282 molecular_function owl:Class GO:1902250 biolink:NamedThing regulation of erythrocyte apoptotic process Any process that modulates the frequency, rate or extent of erythrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of erythrocyte apoptosis|regulation of red blood cell apoptotic process|regulation of red blood cell apoptosis|regulation of RBC apoptotic process|regulation of RBC apoptosis rl 2013-06-20T19:30:53Z biological_process owl:Class GO:0030108 biolink:NamedThing HLA-A specific activating MHC class I receptor activity Combining with a MHC class I molecule of the HLA-A subclass to mediate signaling that activates a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032397 biolink:NamedThing activating MHC class I receptor activity Combining with a MHC class I protein complex to mediate signaling that activates a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018263 biolink:NamedThing isopeptide cross-linking via N-(L-isoaspartyl)-L-cysteine The formation of an isopeptide cross-link between peptidyl-asparagine and peptidyl-cysteine to produce N-(L-isoaspartyl)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0216 biological_process owl:Class GO:0032511 biolink:NamedThing late endosome to vacuole transport via multivesicular body sorting pathway The directed movement of substances from endosomes to vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the vacuole. tmpzr1t_l9r_go_relaxed.owl endosome to vacuole transport via MVB sorting pathway biological_process owl:Class GO:0032509 biolink:NamedThing endosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. tmpzr1t_l9r_go_relaxed.owl endosome transport via MVB sorting pathway biological_process owl:Class GO:0090366 biolink:NamedThing positive regulation of mRNA modification Any process that increases the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:04:45Z biological_process owl:Class GO:0090365 biolink:NamedThing regulation of mRNA modification Any process that modulates the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA editing tb 2010-07-12T11:04:45Z biological_process owl:Class GO:0010859 biolink:NamedThing calcium-dependent cysteine-type endopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of a calcium-dependent cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile in a calcium-dependent manner. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004869 biolink:NamedThing cysteine-type endopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl cysteine protease inhibitor activity|cystatin|thiol protease inhibitor GO:0004870 molecular_function owl:Class GO:1905623 biolink:NamedThing positive regulation of leaf development Any process that activates or increases the frequency, rate or extent of leaf development. tmpzr1t_l9r_go_relaxed.owl upregulation of leaf development|up regulation of leaf development|activation of leaf development|up-regulation of leaf development pga 2016-10-28T15:30:04Z biological_process owl:Class GO:0045283 biolink:NamedThing fumarate reductase complex A membrane-bound flavoenzyme complex consisting of four subunits, A, B, C, and D. A and B comprise the membrane-extrinsic catalytic domain and C (InterPro:IPR003510; InterPro:IPR004224) and D (InterPro:IPR003418) link the catalytic centers to the electron-transport chain. This family consists of the 13 kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalyzed by the related complex II of the respiratory chain (succinate dehydrogenase-(ubiquinone)). tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'succinate dehydrogenase (ubiquinone) activity ; GO:0008177'. cellular_component owl:Class GO:0001741 biolink:NamedThing XY body A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000803 biolink:NamedThing sex chromosome A chromosome involved in sex determination. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043685 biolink:NamedThing conversion of glutamyl-tRNA to glutaminyl-tRNA The modification process that results in the conversion of glutamate charged on a tRNA(Gln) to glutaminyl-tRNA. tmpzr1t_l9r_go_relaxed.owl Note that this process has been observed in some archaeal and bacterial species. biological_process owl:Class GO:0019988 biolink:NamedThing charged-tRNA amino acid modification The covalent alteration of an amino acid charged on a tRNA before it is incorporated into a protein, as in N-formylmethionine, selenocysteine or pyrrolysine. tmpzr1t_l9r_go_relaxed.owl pretranslation protein modification|pretranslational amino acid modification|charged-tRNA modification|charged tRNA modification|charged tRNA amino acid modification|pre-translational protein modification|pre-translational amino acid modification GO:0030630 biological_process owl:Class GO:0048815 biolink:NamedThing hermaphrodite genitalia morphogenesis The process in which the anatomical structures of hermaphrodite genitalia are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097215 biolink:NamedThing negative regulation of lysosomal membrane permeability Any process that decreases the frequency, rate or extent of the passage or uptake of molecules by the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of lysosome membrane permeability pr 2012-01-12T10:23:42Z biological_process owl:Class GO:1905709 biolink:NamedThing negative regulation of membrane permeability Any process that stops, prevents or reduces the frequency, rate or extent of the passage or uptake of molecules by a membrane. tmpzr1t_l9r_go_relaxed.owl hbye 2016-11-18T13:10:42Z biological_process owl:Class GO:0046516 biolink:NamedThing hypusine metabolic process The chemical reactions and pathways involving hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl hypusine metabolism biological_process owl:Class GO:0046967 biolink:NamedThing cytosol to endoplasmic reticulum transport The directed movement of substances from the cytosol to the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl cytosol to ER transport biological_process owl:Class GO:0001575 biolink:NamedThing globoside metabolic process The chemical reactions and pathways involving globosides, globotetraosylceramides, ceramides containing a core structure of GalNAc-beta-(1->3)-Gal-alpha-(1->4)-Glc(I). Globosides are the major neutral glycosphingolipid in normal kidneys and erythrocytes. tmpzr1t_l9r_go_relaxed.owl globoside metabolism biological_process owl:Class GO:0006687 biolink:NamedThing glycosphingolipid metabolic process The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycosphingolipid metabolism biological_process owl:Class GO:0046404 biolink:NamedThing polydeoxyribonucleotide 5'-hydroxyl-kinase activity Catalysis of the reaction: ATP + 5'-dephospho-DNA = ADP + 5'-phospho-DNA. tmpzr1t_l9r_go_relaxed.owl ATP-dependent DNA kinase activity|ATP-dependent polynucleotide 5'-hydroxyl-kinase activity|ATP:5'-dephosphopolydeoxyribonucleotide 5'-phosphotransferase activity|ATP-dependent DNA 5'-hydroxyl-kinase activity|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity https://github.com/geneontology/go-ontology/issues/21619 MetaCyc:POLYNUCLEOTIDE-5-HYDROXYL-KINASE-RXN|KEGG_REACTION:R03840|RHEA:15669|EC:2.7.1.78 molecular_function owl:Class GO:0051733 biolink:NamedThing polydeoxyribonucleotide kinase activity Catalysis of the reaction: NTP + 5'-dephospho-DNA = NDP + 5'-phospho-DNA. tmpzr1t_l9r_go_relaxed.owl DNA kinase activity|DNA 5'-hydroxyl kinase activity molecular_function owl:Class GO:0097017 biolink:NamedThing renal protein absorption A renal system process in which proteins are taken up from the collecting ducts, glomerulus and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures (e.g. protein absorption is observed in nephrocytes in Drosophila, see PMID:23264686). tmpzr1t_l9r_go_relaxed.owl pr 2011-03-23T03:13:04Z biological_process owl:Class GO:0140300 biolink:NamedThing serine import into mitochondrion The process in which serine is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl pg 2018-12-13T15:17:50Z biological_process owl:Class GO:0034267 biolink:NamedThing discadenine metabolic process The chemical reactions and pathways involving discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid. tmpzr1t_l9r_go_relaxed.owl discadenine metabolism biological_process owl:Class GO:0004468 biolink:NamedThing lysine N-acetyltransferase activity, acting on acetyl phosphate as donor Catalysis of the reaction: acetyl phosphate + L-lysine = phosphate + N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl lysine N6-acetyltransferase activity|lysine N(6)-acetyltransferase activity|lysine acetyltransferase activity|acetyl-phosphate:L-lysine 6-N-acetyltransferase activity|LAT activity|acetyl-phosphate:L-lysine N6-acetyltransferase activity Reactome:R-HSA-5618328|Reactome:R-HSA-5693001|RHEA:14417|MetaCyc:LYSINE-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.32 molecular_function owl:Class GO:0030771 biolink:NamedThing N-benzoyl-4-hydroxyanthranilate 4-O-methyltransferase activity Catalysis of the reaction: N-benzoyl-4-hydroxyanthranilate + S-adenosyl-L-methionine(1+) = N-benzoyl-4-methoxyanthranilate + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA:anthranilate N-benzoyltransferase|N-benzoyl-4-hydroxyanthranilate 4-methyltransferase activity|S-adenosyl-L-methionine:N-benzoyl-4-O-hydroxyanthranilate 4-O-methyltransferase activity RHEA:17405|KEGG_REACTION:R04421|MetaCyc:2.1.1.105-RXN|EC:2.1.1.105 molecular_function owl:Class GO:0032154 biolink:NamedThing cleavage furrow The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cleavage_furrow While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists. cellular_component owl:Class GO:0045174 biolink:NamedThing glutathione dehydrogenase (ascorbate) activity Catalysis of the reaction: dehydroascorbate + 2 glutathione = L-ascorbate + glutathione disulfide. tmpzr1t_l9r_go_relaxed.owl glutathione:dehydroascorbate oxidoreductase activity|glutathione:dehydroascorbic acid oxidoreductase activity|dehydroascorbic reductase activity|GDOR|glutathione dehydroascorbate reductase activity|DHA reductase activity|dehydroascorbate reductase activity|dehydroascorbic acid reductase activity Reactome:R-HSA-198813|EC:1.8.5.1|MetaCyc:1.8.5.1-RXN|RHEA:24424|KEGG_REACTION:R01108 molecular_function owl:Class GO:0015038 biolink:NamedThing glutathione disulfide oxidoreductase activity Catalysis of the reaction: 2 glutathione + electron acceptor = glutathione disulfide + electron donor. tmpzr1t_l9r_go_relaxed.owl glutathione disulphide oxidoreductase activity|glutaredoxin Reactome:R-HSA-111746 molecular_function owl:Class GO:0120083 biolink:NamedThing rough endoplasmic reticulum cisterna A subcompartment of the rough endoplasmic reticulum consisting of lumenal expansion into a flattened, disc-shaped cavity. tmpzr1t_l9r_go_relaxed.owl krc 2017-07-05T23:38:49Z cellular_component owl:Class GO:0072144 biolink:NamedThing glomerular mesangial cell development The process whose specific outcome is the progression of a glomerular mesangial cell in the kidney over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T01:53:13Z biological_process owl:Class GO:0120211 biolink:NamedThing proacrosomal vesicle fusion Fusion of the membrane of proacrosomal vesicle with the membrane of another proacrosomal vesicle to form the acrosome. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-22T17:12:55Z biological_process owl:Class GO:0075244 biolink:NamedThing regulation of oospore formation Any process that modulates the frequency, rate or extent of oospore formation, a process in which male and female gametangia develop and fuse to form a thick-walled resting spore of oomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047947 biolink:NamedThing glutamine N-phenylacetyltransferase activity Catalysis of the reaction: phenylacetyl-CoA + L-glutamine = CoA + alpha-N-phenylacetyl-L-glutamine. tmpzr1t_l9r_go_relaxed.owl glutamine phenylacetyltransferase activity|phenylacetyl-CoA:L-glutamine N-acetyltransferase activity|phenylacetyl-CoA:L-glutamine alpha-N-phenylacetyltransferase activity RHEA:21844|EC:2.3.1.14|MetaCyc:GLUTAMINE-N-PHENYLACETYLTRANSFERASE-RXN molecular_function owl:Class GO:2000799 biolink:NamedThing positive regulation of amniotic stem cell differentiation Any process that activates or increases the frequency, rate or extent of amniotic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-29T02:19:06Z biological_process owl:Class GO:1900798 biolink:NamedThing cordyol C catabolic process The chemical reactions and pathways resulting in the breakdown of cordyol C. tmpzr1t_l9r_go_relaxed.owl cordyol C catabolism|cordyol C degradation|cordyol C breakdown di 2012-06-04T09:48:10Z biological_process owl:Class GO:0043539 biolink:NamedThing protein serine/threonine kinase activator activity Binds to and increases the activity of a protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl protein ser/thr kinase activator activity molecular_function owl:Class GO:0010918 biolink:NamedThing positive regulation of mitochondrial membrane potential Any process that activates or increases the frequency, rate or extent of establishment or extent of a mitochondrial membrane potential, the electric potential existing across any mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl elevation of mitochondrial membrane potential biological_process owl:Class GO:0051881 biolink:NamedThing regulation of mitochondrial membrane potential Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098947 biolink:NamedThing intrinsic component of postsynaptic endocytic zone membrane The component of the postsynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic acive zone membrane cellular_component owl:Class GO:1903659 biolink:NamedThing regulation of complement-dependent cytotoxicity Any process that modulates the frequency, rate or extent of complement-dependent cytotoxicity. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-25T15:03:54Z biological_process owl:Class GO:0044355 biolink:NamedThing clearance of foreign intracellular DNA A defense process that protects an organism from invading foreign DNA. tmpzr1t_l9r_go_relaxed.owl clearance of foreign intracellular DNA by conversion of DNA cytidine to uridine https://github.com/geneontology/go-ontology/issues/18727 jl 2011-08-11T11:25:43Z GO:0044356 biological_process owl:Class GO:0099046 biolink:NamedThing clearance of foreign intracellular nucleic acids A defense process that protects an organism from DNA or RNA from an invading organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900026 biolink:NamedThing positive regulation of substrate adhesion-dependent cell spreading Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading. tmpzr1t_l9r_go_relaxed.owl positive regulation of substrate adhesion dependent cell spreading|up regulation of substrate adhesion-dependent cell spreading|up regulation of cell spreading during cell substrate adhesion|up regulation of substrate adhesion dependent cell spreading|positive regulation of cell spreading during cell substrate adhesion yaf 2012-01-12T05:00:46Z biological_process owl:Class GO:0010770 biolink:NamedThing positive regulation of cell morphogenesis involved in differentiation Any process that increases the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042840 biolink:NamedThing D-glucuronate catabolic process The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the D-enantiomer of glucuronate. tmpzr1t_l9r_go_relaxed.owl D-glucuronate degradation|D-glucuronate breakdown|D-glucuronate catabolism biological_process owl:Class GO:0042839 biolink:NamedThing D-glucuronate metabolic process The chemical reactions and pathways involving D-glucuronate, the D-enantiomer of glucuronate. tmpzr1t_l9r_go_relaxed.owl D-glucuronate metabolism biological_process owl:Class GO:0070095 biolink:NamedThing fructose-6-phosphate binding Binding to fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose 6-phosphate binding|fructose 6-phosphate binding molecular_function owl:Class GO:1903301 biolink:NamedThing positive regulation of hexokinase activity Any process that activates or increases the frequency, rate or extent of hexokinase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of hexokinase type III activity|activation of hexokinase type IV|up-regulation of hexokinase type IV glucokinase activity|up-regulation of hexokinase (phosphorylating)|up-regulation of hexokinase type I activity|activation of hexokinase (phosphorylating)|up regulation of hexokinase activity|up-regulation of glucose ATP phosphotransferase activity|positive regulation of glucose ATP phosphotransferase activity|up-regulation of hexokinase type IV (glucokinase) activity|upregulation of hexokinase type IV (glucokinase) activity|activation of hexokinase type I activity|positive regulation of ATP-dependent hexokinase activity|positive regulation of hexokinase type II activity|positive regulation of hexokinase type IV|up regulation of hexokinase type III activity|activation of glucose ATP phosphotransferase activity|activation of hexokinase type IV glucokinase activity|activation of hexokinase activity|up-regulation of hexokinase activity|upregulation of hexokinase type II activity|activation of hexokinase type IV (glucokinase) activity|activation of hexokinase type II activity|upregulation of hexokinase type I activity|up regulation of hexokinase type II activity|up-regulation of hexokinase D|up-regulation of ATP:D-hexose 6-phosphotransferase activity|upregulation of hexokinase type III activity|up regulation of glucose ATP phosphotransferase activity|positive regulation of hexokinase type IV glucokinase activity|activation of hexokinase D|up regulation of ATP-dependent hexokinase activity|upregulation of hexokinase D|up-regulation of ATP-dependent hexokinase activity|up regulation of hexokinase D|activation of ATP:D-hexose 6-phosphotransferase activity|positive regulation of ATP:D-hexose 6-phosphotransferase activity|up regulation of hexokinase type IV (glucokinase) activity|positive regulation of hexokinase D|upregulation of hexokinase type IV|up-regulation of hexokinase type II activity|positive regulation of hexokinase (phosphorylating)|positive regulation of hexokinase type IV (glucokinase) activity|activation of hexokinase type III activity|up-regulation of hexokinase type IV|upregulation of hexokinase type IV glucokinase activity|upregulation of glucose ATP phosphotransferase activity|up regulation of ATP:D-hexose 6-phosphotransferase activity|upregulation of hexokinase activity|positive regulation of hexokinase type I activity|up regulation of hexokinase (phosphorylating)|up-regulation of hexokinase type III activity|up regulation of hexokinase type I activity|activation of ATP-dependent hexokinase activity|up regulation of hexokinase type IV|upregulation of hexokinase (phosphorylating)|upregulation of ATP-dependent hexokinase activity|up regulation of hexokinase type IV glucokinase activity|upregulation of ATP:D-hexose 6-phosphotransferase activity mr 2014-08-15T23:18:09Z biological_process owl:Class GO:0022001 biolink:NamedThing negative regulation of anterior neural cell fate commitment of the neural plate Any process that stops, prevents or reduces the frequency or rate at which a cell adopts an anterior neural cell fate. tmpzr1t_l9r_go_relaxed.owl posteriorization|downregulation of anterior neural cell fate of the neural plate|inhibition of anterior neural cell fate of the neural plate|negative regulation of anterior neural cell fate of the neural plate|caudalization of neural plate|down-regulation of anterior neural cell fate of the neural plate|down regulation of anterior neural cell fate of the neural plate biological_process owl:Class GO:0086020 biolink:NamedThing gap junction channel activity involved in SA node cell-atrial cardiac muscle cell electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from an SA node cell to an atrial cardiomyocyte. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl gap junction channel activity involved in SA node cell-atrial cardiomyocyte electrical coupling|gap junction channel activity involved in sinoatrial node cell-atrial cardiomyocyte electrical coupling|gap junction channel activity involved in sinus node cell-atrial cardiomyocyte electrical coupling|gap junction channel activity involved in SAN cell-atrial cardiomyocyte electrical coupling tb 2011-11-11T02:08:19Z molecular_function owl:Class GO:0000153 biolink:NamedThing cytoplasmic ubiquitin ligase complex A ubiquitin ligase complex found in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051360 biolink:NamedThing peptide cross-linking via L-asparagine 5-imidazolinone glycine The formation of the fluorescent protein FP506 chromophore cross-link from the alpha-carboxyl carbon of residue n, an asparagine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. tmpzr1t_l9r_go_relaxed.owl biosynthetic process of protein-protein cross-link via L-asparagine 5-imidazolinone glycine|biosynthesis of protein-protein cross-link via L-asparagine 5-imidazolinone glycine RESID:AA0380 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0018359 biolink:NamedThing protein-heme P460 linkage via heme P460-bis-L-cysteine-L-tyrosine The linkage of protein to heme P460 via heme P460-bis-L-cysteine-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl protein-haem P460 linkage via haem P460-bis-L-cysteine-L-tyrosine RESID:AA0266 GO:0018385 biological_process owl:Class GO:0097224 biolink:NamedThing sperm connecting piece The segment of the sperm flagellum that attaches to the implantation fossa of the nucleus in the sperm head; from the remnant of the centriole at this point, the axoneme extends throughout the length of the flagellum. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:21:02Z cellular_component owl:Class GO:0045869 biolink:NamedThing negative regulation of single stranded viral RNA replication via double stranded DNA intermediate Any process that stops, prevents, or reduces the frequency, rate or extent of single stranded viral RNA replication via double stranded DNA intermediate. tmpzr1t_l9r_go_relaxed.owl down regulation of retroviral genome replication|inhibition of retroviral genome replication|negative regulation of retroviral genome replication|downregulation of retroviral genome replication|down-regulation of retroviral genome replication|regulation of retroviral genome replication biological_process owl:Class GO:0045091 biolink:NamedThing regulation of single stranded viral RNA replication via double stranded DNA intermediate Any process that modulates the frequency, rate or extent of single stranded viral RNA replication via double stranded DNA intermediate. tmpzr1t_l9r_go_relaxed.owl regulation of retroviral genome replication biological_process owl:Class GO:0140332 biolink:NamedThing lipopolysaccharide transfer activity Removes a lipopolysaccharide (LPS) from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. tmpzr1t_l9r_go_relaxed.owl intermembrane lipopolysaccharide transfer activity|intermembrane LPS transporter activity|intermembrane lipopolysaccharide transporter activity|lipopolysaccharide carrier activity pg 2019-05-13T08:17:35Z molecular_function owl:Class GO:0070455 biolink:NamedThing positive regulation of heme biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme. tmpzr1t_l9r_go_relaxed.owl activation of heme biosynthetic process|positive regulation of heme formation|upregulation of heme biosynthetic process|positive regulation of haem biosynthetic process|up regulation of heme biosynthetic process|positive regulation of heme anabolism|stimulation of heme biosynthetic process|positive regulation of heme biosynthesis|up-regulation of heme biosynthetic process|positive regulation of heme synthesis biological_process owl:Class GO:0034304 biolink:NamedThing actinomycete-type spore formation The process in which differentiated, resting cells are formed from a substrate mycelium; characteristic of many members of the order Actinomycetales. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034285 biolink:NamedThing response to disaccharide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. tmpzr1t_l9r_go_relaxed.owl response to disaccharide stimulus biological_process owl:Class GO:0010472 biolink:NamedThing GDP-galactose:glucose-1-phosphate guanylyltransferase activity Catalysis of the reaction: GDP-L-galactose + alpha-D-glucose 1-phosphate = alpha-L-galactose-1-phosphate + GDP-alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl GDP-L-galactose phosphorylase activity|GDP-L-galactose:glucose-1-phosphate guanylyltransferase activity MetaCyc:RXN4FS-13 molecular_function owl:Class GO:0043430 biolink:NamedThing 2-decaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-decaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-decaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 2-decaprenyl-6-methoxy-1,4-benzoquinone methylase activity RHEA:44764|Reactome:R-HSA-2162188 Note that the polyprenyl sidechain substrate for these methyltransferases varies in length between species, for example, 6 units in S. cerevisae, 8 units in E. coli and 10 units in G. suboxidans. Where the length of the substrate polyprenyl chain is unknown, the term '2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity ; GO:0008425' should be used. molecular_function owl:Class GO:0018172 biolink:NamedThing peptidyl-L-3',4',5'-trihydroxyphenylalanine biosynthetic process from peptidyl-tyrosine The modification of protein tyrosine to peptidyl-L-3',4',5'-dihydroxyphenylalanine. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-3',4',5'-trihydroxyphenylalanine anabolism from peptidyl-tyrosine|peptidyl-L-3',4',5'-trihydroxyphenylalanine synthesis from peptidyl-tyrosine|peptidyl-L-3',4',5'-trihydroxyphenylalanine formation from peptidyl-tyrosine RESID:AA0263 biological_process owl:Class GO:1905198 biolink:NamedThing manchette assembly The aggregation, arrangement and bonding together of a set of components to form a manchette. tmpzr1t_l9r_go_relaxed.owl manchette formation krc 2016-05-12T15:19:08Z biological_process owl:Class GO:0046538 biolink:NamedThing 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate; this reaction requires the cofactor 2,3-bisphosphoglycerate. tmpzr1t_l9r_go_relaxed.owl glycerate phosphomutase (diphosphoglycerate cofactor) activity|PGAM-d molecular_function owl:Class GO:0004619 biolink:NamedThing phosphoglycerate mutase activity Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate. tmpzr1t_l9r_go_relaxed.owl monophosphoglycerate mutase activity|diphosphoglycomutase|PGAM activity|MPGM|phosphoglycerate phosphomutase activity|phosphoglyceromutase activity|PGM|PGA mutase activity|GriP mutase|monophosphoglyceromutase activity|bisphosphoglyceromutase|D-phosphoglycerate 2,3-phosphomutase activity EC:5.4.2.1|Reactome:R-HSA-71654|RHEA:15901|MetaCyc:3PGAREARR-RXN|Reactome:R-HSA-71445 molecular_function owl:Class GO:1901592 biolink:NamedThing negative regulation of double-strand break repair via break-induced replication Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair via break-induced replication. tmpzr1t_l9r_go_relaxed.owl down-regulation of double-strand break repair via break-induced replication|downregulation of double-strand break repair via break-induced replication|inhibition of double-strand break repair via break-induced replication|down regulation of double-strand break repair via break-induced replication al 2012-11-07T16:37:39Z biological_process owl:Class GO:0097471 biolink:NamedThing mossy fiber rosette A synapse of a mossy fiber onto the dendrite of a granule cell; each mossy fiber can have up to 50 rosettes. tmpzr1t_l9r_go_relaxed.owl cerebellar mossy fiber to granule cell synapse NIF_Subcellular:nlx_subcell_091021 pr 2013-02-21T07:42:52Z cellular_component owl:Class GO:2000972 biolink:NamedThing positive regulation of detection of glucose Any process that activates or increases the frequency, rate or extent of detection of glucose. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucose perception|positive regulation of glucose detection|positive regulation of glucose sensing vk 2011-08-02T10:18:56Z biological_process owl:Class GO:1901230 biolink:NamedThing negative regulation of non-canonical Wnt signaling pathway via JNK cascade Any process that stops, prevents or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway via JNK cascade. tmpzr1t_l9r_go_relaxed.owl inhibition of non-canonical Wnt receptor signaling pathway via JNK cascade|negative regulation of non-canonical Wnt-activated signaling pathway via JNK cascade|down-regulation of non-canonical Wnt receptor signalling pathway via JNK cascade|downregulation of non-canonical Wnt receptor signalling pathway via JNK cascade|down-regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|negative regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|inhibition of non-canonical Wnt receptor signalling pathway via JNK cascade|downregulation of non-canonical Wnt receptor signaling pathway via JNK cascade|down regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|negative regulation of non-canonical Wnt receptor signalling pathway via JNK cascade|down regulation of non-canonical Wnt receptor signalling pathway via JNK cascade vk 2012-08-07T14:14:39Z biological_process owl:Class GO:0060552 biolink:NamedThing positive regulation of fructose 1,6-bisphosphate metabolic process Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:23:40Z biological_process owl:Class GO:0043048 biolink:NamedThing dolichyl monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dolichyl diphosphate, a phosphorylated dolichol derivative. tmpzr1t_l9r_go_relaxed.owl dolichyl monophosphate formation|dolichyl monophosphate synthesis|dolichyl monophosphate anabolism|dolichyl monophosphate biosynthesis biological_process owl:Class GO:0102601 biolink:NamedThing cytochrome P450 dependent beta-amyrin 16beta-hydroxylase activity Catalysis of the reaction: beta-amyrin + O2 + H+ + NADPH = 16beta-hydroxy-beta-amyrin + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl RHEA:55440|EC:1.14.14.63|MetaCyc:RXN-15385 molecular_function owl:Class GO:1902383 biolink:NamedThing 11-oxo-beta-amyrin biosynthetic process The chemical reactions and pathways resulting in the formation of 11-oxo-beta-amyrin. tmpzr1t_l9r_go_relaxed.owl 11-oxo-beta-amyrin biosynthesis|11-oxo-beta-amyrin synthesis|11-oxo-beta-amyrin formation|11-oxo-beta-amyrin anabolism ms 2013-09-03T12:55:46Z biological_process owl:Class GO:1902381 biolink:NamedThing 11-oxo-beta-amyrin metabolic process The chemical reactions and pathways involving 11-oxo-beta-amyrin. tmpzr1t_l9r_go_relaxed.owl 11-oxo-beta-amyrin metabolism ms 2013-09-03T12:55:29Z biological_process owl:Class GO:0046158 biolink:NamedThing ocellus pigment metabolic process The chemical reactions and pathways involving ocellus pigments, any general or particular coloring matter in living organisms, found or utilized in the ocellus, a minute simple eye found in many invertebrates. tmpzr1t_l9r_go_relaxed.owl ocellus pigment metabolism biological_process owl:Class GO:0002865 biolink:NamedThing negative regulation of acute inflammatory response to antigenic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of acute inflammatory response to antigenic stimulus|inhibition of acute inflammatory response to antigenic stimulus|downregulation of acute inflammatory response to antigenic stimulus|down regulation of acute inflammatory response to antigenic stimulus biological_process owl:Class GO:0002864 biolink:NamedThing regulation of acute inflammatory response to antigenic stimulus Any process that modulates the frequency, rate, or extent of an acute inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018962 biolink:NamedThing 3-phenylpropionate metabolic process The chemical reactions and pathways involving 3-phenylpropionate, the anion of phenylpropanoic acid. It is produced from putrefaction of proteins in soil or breakdown of several constituents of plants, such as lignin, various oils and resins. tmpzr1t_l9r_go_relaxed.owl hydrocinnamic acid metabolic process|hydrocinnamic acid metabolism|phenylpropanoate metabolic process|phenylpropanoate metabolism|3-phenylpropionate metabolism UM-BBD_pathwayID:ppa biological_process owl:Class GO:0005687 biolink:NamedThing U4 snRNP A ribonucleoprotein complex that contains small nuclear RNA U4, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U4 snRNP, most of which remain associated with the U4 snRNA both while the U4 snRNP is free or assembled into the U4/U6 snRNP or into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U4 cellular_component owl:Class GO:0033863 biolink:NamedThing ribose 1,5-bisphosphate phosphokinase activity Catalysis of the reaction: D-ribose 1,5-diphosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl PhnN|ribose 1,5-bisphosphokinase activity|ATP:ribose-1,5-bisphosphate phosphotransferase activity MetaCyc:2.7.4.23-RXN|KEGG_REACTION:R06836|EC:2.7.4.23|RHEA:20109 molecular_function owl:Class GO:1903908 biolink:NamedThing positive regulation of plasma membrane raft polarization Any process that activates or increases the frequency, rate or extent of plasma membrane raft polarization. tmpzr1t_l9r_go_relaxed.owl activation of plasma membrane raft polarization|up-regulation of plasma membrane raft polarization|up regulation of plasma membrane raft polarization|upregulation of plasma membrane raft polarization als 2015-02-09T10:54:15Z biological_process owl:Class GO:1902124 biolink:NamedThing (+)-pinoresinol metabolic process The chemical reactions and pathways involving (+)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (+)-pinoresinol metabolism ms 2013-05-21T08:49:10Z biological_process owl:Class GO:0008509 biolink:NamedThing anion transmembrane transporter activity Enables the transfer of a negatively charged ion from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl anion transporter activity Reactome:R-HSA-166214 molecular_function owl:Class GO:0102628 biolink:NamedThing costunolide 3beta-hydroxylase activity Catalysis of the reaction: costunolide + NADPH + O2 + H+ <=> 3beta-hydroxycostunolide + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15533 molecular_function owl:Class GO:1900605 biolink:NamedThing tensidol A biosynthetic process The chemical reactions and pathways resulting in the formation of tensidol A. tmpzr1t_l9r_go_relaxed.owl tensidol A biosynthesis|tensidol A synthesis|tensidol A anabolism|tensidol A formation di 2012-05-15T06:58:16Z biological_process owl:Class GO:1905952 biolink:NamedThing regulation of lipid localization Any process that modulates the frequency, rate or extent of lipid localization. tmpzr1t_l9r_go_relaxed.owl regulation of lipid localisation rz 2017-02-21T12:12:22Z biological_process owl:Class GO:0034482 biolink:NamedThing chondroitin 2-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 2'-O-sulfate. Results in sulfation of glucuronic acid and iduronic acid residues. tmpzr1t_l9r_go_relaxed.owl chondroitin 2-O-sulphotransferase activity|chondroitin 2-sulfotransferase activity molecular_function owl:Class GO:0034481 biolink:NamedThing chondroitin sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904658 biolink:NamedThing positive regulation of sensory perception of sweet taste Any process that activates or increases the frequency, rate or extent of sensory perception of sweet taste. tmpzr1t_l9r_go_relaxed.owl up regulation of sensory perception of sweet taste|positive regulation of sweet taste perception|upregulation of sweet taste perception|up-regulation of sensory perception of sweet taste|activation of sensory perception of sweet taste|up regulation of sweet taste perception|activation of sweet taste perception|up-regulation of sweet taste perception|upregulation of sensory perception of sweet taste mr 2015-09-04T16:43:24Z biological_process owl:Class GO:1904656 biolink:NamedThing regulation of sensory perception of sweet taste Any process that modulates the frequency, rate or extent of sensory perception of sweet taste. tmpzr1t_l9r_go_relaxed.owl regulation of sweet taste perception mr 2015-09-04T16:43:12Z biological_process owl:Class GO:0006308 biolink:NamedThing DNA catabolic process The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. tmpzr1t_l9r_go_relaxed.owl DNA breakdown|DNA degradation|DNA catabolism biological_process owl:Class GO:1904943 biolink:NamedThing negative regulation of cardiac ventricle formation Any process that stops, prevents or reduces the frequency, rate or extent of cardiac ventricle formation. tmpzr1t_l9r_go_relaxed.owl inhibition of cardiac ventricle formation|down regulation of cardiac ventricle formation|down-regulation of cardiac ventricle formation|downregulation of cardiac ventricle formation bc 2016-02-02T16:37:24Z biological_process owl:Class GO:1901211 biolink:NamedThing negative regulation of cardiac chamber formation Any process that stops, prevents or reduces the frequency, rate or extent of cardiac chamber formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cardiac chamber formation|down regulation of heart chamber formation|inhibition of heart chamber formation|downregulation of heart chamber formation|inhibition of cardiac chamber formation|negative regulation of heart chamber formation|downregulation of cardiac chamber formation|down-regulation of heart chamber formation|down regulation of cardiac chamber formation rl 2012-07-31T07:18:57Z biological_process owl:Class GO:0071636 biolink:NamedThing positive regulation of transforming growth factor beta production Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta. tmpzr1t_l9r_go_relaxed.owl positive regulation of TGF-B production|positive regulation of transforming growth factor-beta production|positive regulation of TGFbeta production|positive regulation of TGFB production|positive regulation of transforming growth factor-beta secretion|positive regulation of TGF-beta production mah 2010-02-12T10:39:51Z GO:2001203 biological_process owl:Class GO:0140703 biolink:NamedThing 3',3'-cyclic GMP-AMP binding Binding to 3',3' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 3',5' and 3',5' linkages. tmpzr1t_l9r_go_relaxed.owl 3',3'-cGMP-AMP binding|3',3' cyclic-GMP-AMP binding|3',3'-cyclic GAMP binding|3',3'-cGAMP binding https://github.com/geneontology/go-ontology/issues/21980 pg 2021-08-27T05:44:15Z molecular_function owl:Class GO:0090134 biolink:NamedThing cell migration involved in mesendoderm migration The orderly movement of epithelial cells from one site to another that contributes to the migration of mesendodermal tissue. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:28:11Z biological_process owl:Class GO:0002067 biolink:NamedThing glandular epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glandular epithelial cell. A glandular epithelial cell is a columnar/cuboidal epithelial cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043551 biolink:NamedThing regulation of phosphatidylinositol 3-kinase activity Any process that modulates the frequency, rate or extent of phosphatidylinositol 3-kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to an inositol lipid at the 3' position of the inositol ring. tmpzr1t_l9r_go_relaxed.owl regulation of phosphoinositide 3-kinase activity biological_process owl:Class GO:0015990 biolink:NamedThing electron transport coupled proton transport The transport of protons against an electrochemical gradient, using energy from electron transport. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015988 biolink:NamedThing energy coupled proton transmembrane transport, against electrochemical gradient The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009101 biolink:NamedThing glycoprotein biosynthetic process The chemical reactions and pathways resulting in the formation of glycoproteins, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. tmpzr1t_l9r_go_relaxed.owl glycoprotein anabolism|glycoprotein formation|glycoprotein synthesis|glycoprotein biosynthesis biological_process owl:Class GO:0090167 biolink:NamedThing Golgi distribution to daughter cells Any process in which disassembled Golgi vesicles are localized into daughter cells upon cell division. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T09:15:11Z biological_process owl:Class GO:0060255 biolink:NamedThing regulation of macromolecule metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044313 biolink:NamedThing protein K6-linked deubiquitination A protein deubiquitination process in which a K6-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl jl 2010-06-01T03:10:11Z biological_process owl:Class GO:0002632 biolink:NamedThing negative regulation of granuloma formation Any process that stops, prevents, or reduces the frequency, rate, or extent of granuloma formation. tmpzr1t_l9r_go_relaxed.owl downregulation of granuloma formation|down-regulation of granuloma formation|inhibition of granuloma formation|down regulation of granuloma formation biological_process owl:Class GO:0002677 biolink:NamedThing negative regulation of chronic inflammatory response Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response. tmpzr1t_l9r_go_relaxed.owl downregulation of chronic inflammatory response|down-regulation of chronic inflammatory response|inhibition of chronic inflammatory response|down regulation of chronic inflammatory response biological_process owl:Class GO:0016979 biolink:NamedThing lipoate-protein ligase activity Catalysis of the lipoylation of a protein in two steps: ATP + (R)-lipoate + a [lipoyl-carrier protein]-L-lysine = a [lipoyl-carrier protein]-N6-(lipoyl)lysine + AMP + diphosphate (overall reaction): (1) ATP + (R)-lipoate = lipoyl-AMP + diphosphate; (2) lipoyl-AMP + a [lipoyl-carrier protein]-L-lysine = a [lipoyl-carrier protein]-N6-(lipoyl)lysine + AMP. tmpzr1t_l9r_go_relaxed.owl lipoate-protein ligase A activity|lipoate-protein ligase B activity|lipoate-protein ligase activity (lipoylation of glycine cleavage complex) MetaCyc:RXN-13039|MetaCyc:RXN-8654|MetaCyc:RXN0-1141|EC:6.3.1.20|RHEA:49288|MetaCyc:RXN-8655 GO:0102315|GO:0016978|GO:0008916 molecular_function owl:Class GO:0050646 biolink:NamedThing 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding Binding to 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. tmpzr1t_l9r_go_relaxed.owl 5-oxo-6E,8Z,11Z,14Z-eicosatetraenoic acid binding molecular_function owl:Class GO:0062099 biolink:NamedThing negative regulation of programmed necrotic cell death Any process that decreases the frequency, rate or extent of programmed necrotic cell death. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-29T15:05:56Z biological_process owl:Class GO:0062098 biolink:NamedThing regulation of programmed necrotic cell death Any process that modulates the frequency, rate or extent of programmed necrotic cell death. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-29T14:58:26Z biological_process owl:Class GO:0003343 biolink:NamedThing septum transversum development The progression of the septum transversum from its initial formation to the mature structure. The septum transversum is a portion of the trunk mesenchyme. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T10:40:17Z biological_process owl:Class GO:2000320 biolink:NamedThing negative regulation of T-helper 17 cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-helper 17 cell development mah 2011-01-18T01:44:31Z biological_process owl:Class GO:0044092 biolink:NamedThing negative regulation of molecular function Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. tmpzr1t_l9r_go_relaxed.owl jl 2009-04-21T04:07:27Z biological_process owl:Class GO:0047915 biolink:NamedThing ganglioside galactosyltransferase activity Catalysis of the reaction: UDP-galactose + N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-1,4-beta-D-glucosyl-N-acylsphingosine = UDP + D-galactosyl-1,3-beta-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl UDP-galactose-GM2 galactosyltransferase activity|GM1-synthase activity|UDP-galactose:N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine beta-1,3-D-galactosyltransferase activity|uridine diphosphate D-galactose:glycolipid galactosyltransferase activity|UDP-galactose-GM2 ganglioside galactosyltransferase activity|UDP galactose-LAC Tet-ceramide alpha-galactosyltransferase activity|UDPgalactose-ceramide galactosyltransferase activity|uridine diphosphogalactose-GM2 galactosyltransferase activity|uridine diphosphogalactose-ceramide galactosyltransferase activity|UDPgalactose:N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine beta-1,3-D-galactosyltransferase activity|UDP-galactose:N-acetylgalactosaminyl-(N-acetylneuraminyl) galactosyl-glucosyl-ceramide galactosyltransferase activity MetaCyc:GANGLIOSIDE-GALACTOSYLTRANSFERASE-RXN|EC:2.4.1.62|RHEA:16773 molecular_function owl:Class GO:0004972 biolink:NamedThing NMDA glutamate receptor activity An cation channel that opens in response to binding by extracellular glutmate, but only if glycine is also bound and the membrane is depolarized. Voltage gating is indirect, due to ejection of bound magnesium from the pore at permissive voltages. tmpzr1t_l9r_go_relaxed.owl NMDA receptor|N-methyl-D-aspartate selective glutamate receptor activity Wikipedia:NMDA_receptor The name of this receptor comes from its selective activation by N-methyl-D-aspartate (NMDA). Note that this term represents an activity and not a gene product. molecular_function owl:Class GO:2001000 biolink:NamedThing regulation of xylan catabolic process Any process that modulates the frequency, rate or extent of xylan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of xylan breakdown|regulation of xylan catabolism|regulation of xylan degradation tt 2011-08-08T03:23:13Z biological_process owl:Class GO:1904417 biolink:NamedThing positive regulation of xenophagy Any process that activates or increases the frequency, rate or extent of xenophagy. tmpzr1t_l9r_go_relaxed.owl up regulation of xenophagy|up-regulation of xenophagy|upregulation of xenophagy|activation of xenophagy An example of this is mouse Tbk1 (UniProt symbol, Q9WUN2) in PMID:21617041 (inferred from mutant phenotype). pad 2015-06-29T12:30:59Z biological_process owl:Class GO:0001744 biolink:NamedThing insect visual primordium formation Establishment of the optic lobe placode. In Drosophila, for example, the placode appears in the dorsolateral region of the head in late stage 11 embryos and is the precursor to the larval visual system. tmpzr1t_l9r_go_relaxed.owl optic lobe and Bolwig's organ precursor formation|optic lobe placode formation GO:0007457 biological_process owl:Class GO:1990010 biolink:NamedThing compound eye retinal cell apoptotic process Any apoptotic process in a compound eye retinal cell. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-12T10:21:07Z biological_process owl:Class GO:1990009 biolink:NamedThing retinal cell apoptotic process Any apoptotic process in a retinal cell. tmpzr1t_l9r_go_relaxed.owl induction of retinal programmed cell death pr 2012-12-12T10:15:08Z GO:0046674 biological_process owl:Class GO:0031737 biolink:NamedThing CX3C chemokine receptor binding Binding to a CX3C chemokine receptor. tmpzr1t_l9r_go_relaxed.owl fractalkine receptor binding|CX3C chemokine receptor ligand molecular_function owl:Class GO:0042379 biolink:NamedThing chemokine receptor binding Binding to a chemokine receptor. tmpzr1t_l9r_go_relaxed.owl chemokine receptor ligand molecular_function owl:Class GO:0032562 biolink:NamedThing dAMP binding Binding to dAMP, deoxyadenosine monophosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032558 biolink:NamedThing adenyl deoxyribonucleotide binding Binding to an adenyl deoxyribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048830 biolink:NamedThing adventitious root development The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048364 biolink:NamedThing root development The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062127 biolink:NamedThing fatty acid primary amide catabolic process The chemical reactions and pathways resulting in the breakdown of primary fatty amides. tmpzr1t_l9r_go_relaxed.owl primary fatty amide catabolic process dph 2019-05-30T18:26:49Z biological_process owl:Class GO:0035768 biolink:NamedThing endothelial cell chemotaxis to fibroblast growth factor The directed movement of an endothelial cell in response to the presence of fibroblast growth factor (FGF). tmpzr1t_l9r_go_relaxed.owl bf 2011-03-31T04:32:17Z biological_process owl:Class GO:0035766 biolink:NamedThing cell chemotaxis to fibroblast growth factor The directed movement of a motile cell in response to the presence of fibroblast growth factor (FGF). tmpzr1t_l9r_go_relaxed.owl bf 2011-03-31T04:30:16Z biological_process owl:Class GO:0039580 biolink:NamedThing suppression by virus of host PKR signaling Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (Protein Kinase regulated by RNA) signaling. Host PKR signaling includes targets such as the translation initiation factor eIF2alpha, inhibiting protein synthesis as an antiviral response. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host EIF2AK2 activity|suppression by virus of host PKR activity https://github.com/geneontology/go-ontology/issues/21971 bf biological_process owl:Class GO:0019606 biolink:NamedThing 2-oxobutyrate catabolic process The chemical reactions and pathways resulting in the breakdown of 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2. tmpzr1t_l9r_go_relaxed.owl 2-oxobutyrate degradation|2-oxobutyrate catabolism|alpha-ketobutyrate catabolic process|2-oxobutyrate breakdown|alpha-ketobutyrate catabolism MetaCyc:2OXOBUTYRATECAT-PWY biological_process owl:Class GO:0019626 biolink:NamedThing short-chain fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short-chain fatty acid degradation|short-chain fatty acid catabolism|short-chain fatty acid breakdown MetaCyc:ACETOACETATE-DEG-PWY biological_process owl:Class GO:0071333 biolink:NamedThing cellular response to glucose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:38:03Z biological_process owl:Class GO:1900506 biolink:NamedThing regulation of iron-sulfur-molybdenum cofactor assembly Any process that modulates the frequency, rate or extent of iron-sulfur-molybdenum cofactor assembly. tmpzr1t_l9r_go_relaxed.owl regulation of FeMoco assembly|regulation of iron molybdenum cofactor biosynthetic process|regulation of iron molybdenum cofactor assembly|regulation of FeMoco biosynthetic process|regulation of iron molybdenum cofactor biosynthesis tt 2012-05-02T04:02:16Z biological_process owl:Class GO:0033156 biolink:NamedThing oligogalacturonide transport The directed movement of oligogalacturonides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034343 biolink:NamedThing type III interferon production The appearance of type III interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl type III interferon secretion|type III IFN production Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. This term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072644 biological_process owl:Class GO:0044865 biolink:NamedThing negative regulation by virus of host cell division Any process where an infecting virus stops, prevents, or reduces the frequency, rate or extent of its host's cell division. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host cell division jl 2014-08-05T16:31:44Z biological_process owl:Class GO:0004516 biolink:NamedThing nicotinate phosphoribosyltransferase activity Catalysis of the reaction: diphosphate + nicotinate D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + H(+) + nicotinate. tmpzr1t_l9r_go_relaxed.owl niacin ribonucleotidase activity|nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase activity|nicotinic acid mononucleotide pyrophosphorylase activity|nicotinic acid mononucleotide glycohydrolase activity|nicotinic acid phosphoribosyltransferase activity EC:6.3.4.21|KEGG_REACTION:R01724|MetaCyc:NICOTINATEPRIBOSYLTRANS-RXN|Reactome:R-HSA-197186|RHEA:36163 molecular_function owl:Class GO:0080088 biolink:NamedThing spermidine hydroxycinnamate conjugate biosynthetic process The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T03:24:03Z biological_process owl:Class GO:1901334 biolink:NamedThing lactone metabolic process The chemical reactions and pathways involving lactone. tmpzr1t_l9r_go_relaxed.owl lactone metabolism bf 2012-09-03T10:26:00Z biological_process owl:Class GO:0052825 biolink:NamedThing inositol-1,3,4,5,6-pentakisphosphate 1-phosphatase activity Catalysis of the reaction: inositol-1,3,4,5,6-pentakisphosphate + H2O = inositol-3,4,5,6-tetrakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855219 2011-11-29T09:49:22Z molecular_function owl:Class GO:1902474 biolink:NamedThing positive regulation of protein localization to synapse Any process that activates or increases the frequency, rate or extent of protein localization to synapse. tmpzr1t_l9r_go_relaxed.owl activation of protein localisation to synapse|up-regulation of protein localisation to synapse|up regulation of protein localization to synapse|positive regulation of protein localisation to synapse|upregulation of protein localisation to synapse|upregulation of protein localization to synapse|activation of protein localization to synapse|up-regulation of protein localization to synapse|up regulation of protein localisation to synapse kmv 2013-10-25T15:09:18Z biological_process owl:Class GO:1902473 biolink:NamedThing regulation of protein localization to synapse Any process that modulates the frequency, rate or extent of protein localization to synapse. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to synapse kmv 2013-10-25T15:09:09Z biological_process owl:Class GO:1904253 biolink:NamedThing positive regulation of bile acid metabolic process Any process that activates or increases the frequency, rate or extent of bile acid metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of bile acid metabolism|up regulation of bile acid metabolic process|up-regulation of bile acid metabolism|activation of bile acid metabolic process|up-regulation of bile acid metabolic process|upregulation of bile acid metabolic process|up regulation of bile acid metabolism|positive regulation of bile acid metabolism|upregulation of bile acid metabolism bf 2015-05-20T11:04:40Z biological_process owl:Class GO:0032063 biolink:NamedThing negative regulation of translational initiation in response to osmotic stress Any process that stops, prevents or reduces the rate of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl downregulation of translation initiation in response to osmotic stress|inhibition of translation initiation in response to osmotic stress|down-regulation of translation initiation in response to osmotic stress|down regulation of translation initiation in response to osmotic stress biological_process owl:Class GO:0070761 biolink:NamedThing pre-snoRNP complex A ribonucleoprotein complex that contains a precursor small nucleolar RNA (pre-snoRNA) and associated proteins, and forms during small nucleolar ribonucleoprotein complex (snoRNP) assembly. Pre-snoRNP complexes may contain proteins not found in the corresponding mature snoRNP complexes. tmpzr1t_l9r_go_relaxed.owl pre-small nucleolar ribonucleoprotein complex mah 2009-06-23T02:32:10Z cellular_component owl:Class GO:0097347 biolink:NamedThing TAM protein secretion complex A heterooligomeric protein complex that spans the bacterial periplasm and enables the secretion of adhesin proteins in Gram-negative bacteria. In Citrobacter rodentium, Salmonella enterica and Escherichia coli, the TAM complex consists of an Omp85-family protein, TamA, in the outer membrane and TamB in the inner membrane. tmpzr1t_l9r_go_relaxed.owl translocation and assembly module protein complex pr 2012-06-21T10:44:15Z cellular_component owl:Class GO:0010983 biolink:NamedThing positive regulation of high-density lipoprotein particle clearance Any process that increases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:03:32Z biological_process owl:Class GO:0010982 biolink:NamedThing regulation of high-density lipoprotein particle clearance Any process that modulates the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:01:30Z biological_process owl:Class GO:0048022 biolink:NamedThing negative regulation of melanin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of melanin. tmpzr1t_l9r_go_relaxed.owl negative regulation of melanin formation|inhibition of melanin biosynthetic process|negative regulation of melanin anabolism|downregulation of melanin biosynthetic process|negative regulation of melanin synthesis|down-regulation of melanin biosynthetic process|down regulation of melanin biosynthetic process|negative regulation of melanin biosynthesis biological_process owl:Class GO:0051546 biolink:NamedThing keratinocyte migration The directed movement of a keratinocyte, epidermal cells which synthesize keratin, from one site to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003838 biolink:NamedThing sterol 24-C-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 5-alpha-cholest-8,24-dien-3-beta-ol = S-adenosyl-L-homocysteine + 24-methylene-5-alpha-cholest-8-en-3-beta-ol. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:Delta24(23)-sterol methyltransferase activity|delta(24)-sterol C-methyltransferase activity|delta24-sterol methyltransferase activity|S-adenosyl-4-methionine:sterol Delta(24)-methyltransferase activity|sterol 24C methyltransferase activity|delta(24)-methyltransferase activity|zymosterol-24-methyltransferase activity|delta24-methyltransferase activity|SMT1 activity|S-adenosyl-L-methionine:zymosterol 24-C-methyltransferase activity|24-sterol C-methyltransferase activity|delta(24)-sterol methyltransferase activity|phytosterol methyltransferase activity|S-adenosyl-L-methionine:Delta(24(23))-sterol methyltransferase activity|S-adenosyl-4-methionine:sterol delta24-methyltransferase activity https://github.com/geneontology/go-ontology/issues/20399 MetaCyc:RXN3O-178|RHEA:21128|MetaCyc:RXN-11201|EC:2.1.1.41 GO:0102101 molecular_function owl:Class GO:0010821 biolink:NamedThing regulation of mitochondrion organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrion organisation biological_process owl:Class GO:1904873 biolink:NamedThing negative regulation of telomerase RNA localization to Cajal body Any process that stops, prevents or reduces the frequency, rate or extent of telomerase RNA localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl inhibition of telomerase RNA localization to Cajal body|down-regulation of telomerase RNA localization to Cajal body|down regulation of telomerase RNA localization to Cajal body|downregulation of telomerase RNA localization to Cajal body nc 2015-12-18T11:28:27Z biological_process owl:Class GO:0044242 biolink:NamedThing cellular lipid catabolic process The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular lipid degradation|cellular lipid catabolism|cellular lipid breakdown biological_process owl:Class GO:0031771 biolink:NamedThing type 1 hypocretin receptor binding Binding to a type 1 hypocretin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 hypocretin receptor ligand|type 1 orexin receptor binding molecular_function owl:Class GO:0042324 biolink:NamedThing hypocretin receptor binding Binding to a hypocretin receptor. tmpzr1t_l9r_go_relaxed.owl hypocretin receptor ligand|orexin receptor ligand|orexin receptor binding molecular_function owl:Class GO:1900158 biolink:NamedThing negative regulation of bone mineralization involved in bone maturation Any process that stops, prevents or reduces the frequency, rate or extent of bone mineralization involved in bone maturation. tmpzr1t_l9r_go_relaxed.owl inhibition of bone mineralization involved in bone maturation|down regulation of bone mineralization involved in bone maturation|downregulation of bone mineralization involved in bone maturation|down-regulation of bone mineralization involved in bone maturation vk 2012-03-07T08:55:12Z biological_process owl:Class GO:1902726 biolink:NamedThing positive regulation of skeletal muscle satellite cell differentiation Any process that activates or increases the frequency, rate or extent of satellite cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of satellite cell differentiation|up-regulation of satellite cell differentiation|up regulation of satellite cell differentiation|activation of satellite cell differentiation mr 2014-02-24T16:10:14Z biological_process owl:Class GO:2001016 biolink:NamedThing positive regulation of skeletal muscle cell differentiation Any process that activates or increases the frequency, rate or extent of skeletal muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-11T08:54:44Z biological_process owl:Class GO:0009696 biolink:NamedThing salicylic acid metabolic process The chemical reactions and pathways involving of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. tmpzr1t_l9r_go_relaxed.owl salicylic acid metabolism biological_process owl:Class GO:0102614 biolink:NamedThing germacrene A acid 8beta-hydroxylase activity Catalysis of the reaction: germacra-1(10),4,11(13)-trien-12-oate + NADPH + O2 + H+ <=> 8beta-hydroxy-germacra-1(10),4,11(13)-trien-12-oate + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15460 molecular_function owl:Class GO:1905923 biolink:NamedThing positive regulation of acetylcholine biosynthetic process Any process that activates or increases the frequency, rate or extent of acetylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of acetylcholine synthesis|up-regulation of acetylcholine anabolism|up-regulation of acetylcholine biosynthetic process|positive regulation of acetylcholine anabolism|upregulation of acetylcholine synthesis|activation of acetylcholine biosynthetic process|positive regulation of acetylcholine formation|up regulation of acetylcholine biosynthesis|up regulation of acetylcholine biosynthetic process|up regulation of acetylcholine synthesis|positive regulation of acetylcholine biosynthesis|upregulation of acetylcholine biosynthesis|up-regulation of acetylcholine synthesis|up-regulation of acetylcholine formation|activation of acetylcholine formation|activation of acetylcholine anabolism|upregulation of acetylcholine anabolism|upregulation of acetylcholine biosynthetic process|up-regulation of acetylcholine biosynthesis|up regulation of acetylcholine formation|up regulation of acetylcholine anabolism|activation of acetylcholine synthesis|upregulation of acetylcholine formation|activation of acetylcholine biosynthesis bc 2017-02-08T13:08:48Z biological_process owl:Class GO:2000133 biolink:NamedThing positive regulation of tyramine signaling pathway Any process that activates or increases the frequency, rate or extent of tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of tyramine signalling pathway mah 2010-09-29T09:32:03Z biological_process owl:Class GO:0061312 biolink:NamedThing BMP signaling pathway involved in heart development A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in heart development dph 2010-09-23T11:02:14Z biological_process owl:Class GO:0120178 biolink:NamedThing steroid hormone biosynthetic process The chemical reactions and pathways resulting in the formation of any steroid hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-20T22:34:00Z biological_process owl:Class GO:0062230 biolink:NamedThing negative regulation of larval somatic muscle development Any process that decreases the rate, frequency or extent of larval somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:46:48Z biological_process owl:Class GO:0016561 biolink:NamedThing protein import into peroxisome matrix, translocation The process in which proteins are moved across the peroxisomal membrane into the matrix. It is likely that the peroxisome targeting sequence receptor remains associated with cargo proteins during translocation. tmpzr1t_l9r_go_relaxed.owl protein translocation during peroxisome matrix protein import|protein transport into peroxisome matrix, translocation|protein translocation during protein transport into peroxisome matrix|peroxisome matrix protein import, translocation|peroxisome receptor translocation|protein translocation during protein import into peroxisome matrix biological_process owl:Class GO:0000936 biolink:NamedThing primary cell septum A cell septum that forms following nuclear division. tmpzr1t_l9r_go_relaxed.owl primary septum cellular_component owl:Class GO:0019207 biolink:NamedThing kinase regulator activity Modulates the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070351 biolink:NamedThing negative regulation of white fat cell proliferation Any process that stops or decreases the rate or extent of white fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of white fat cell proliferation|negative regulation of white adipose cell proliferation|inhibition of white fat cell proliferation|downregulation of white fat cell proliferation|down regulation of white fat cell proliferation|negative regulation of white adipocyte proliferation biological_process owl:Class GO:0070345 biolink:NamedThing negative regulation of fat cell proliferation Any process that stops or decreases the rate or extent of fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of fat cell proliferation|inhibition of fat cell proliferation|down-regulation of fat cell proliferation|negative regulation of adipocyte proliferation|negative regulation of adipose cell proliferation|downregulation of fat cell proliferation biological_process owl:Class GO:0032996 biolink:NamedThing Bcl3-Bcl10 complex A protein complex containing Bcl3 and Bcl10, which forms when Akt1 is activated by TNF-alpha to phosphorylate Bcl10; the Bcl3-Bcl10 complex is translocated to the nucleus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009506 biolink:NamedThing plasmodesma A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. tmpzr1t_l9r_go_relaxed.owl plasmodesmata Wikipedia:Plasmodesma cellular_component owl:Class GO:0070860 biolink:NamedThing RNA polymerase I core factor complex A RNA polymerase I-specific transcription factor complex that is required for the transcription of rDNA by RNA polymerase I. In yeast the complex consists of Rrn6p, Rrn7p, and Rrn11p. tmpzr1t_l9r_go_relaxed.owl Note that, although this complex can be considered analogous to the mammalian transcription factor SL complex, the core factor complex does not include TBP, whereas SL1 does. mah 2009-08-14T05:00:44Z cellular_component owl:Class GO:1902232 biolink:NamedThing regulation of positive thymic T cell selection Any process that modulates the frequency, rate or extent of positive thymic T cell selection. tmpzr1t_l9r_go_relaxed.owl regulation of positive thymic T-cell selection|regulation of positive thymic T-lymphocyte selection|regulation of positive thymic T lymphocyte selection lb 2013-06-14T11:19:09Z biological_process owl:Class GO:2000240 biolink:NamedThing positive regulation of tRNA export from nucleus Any process that activates or increases the frequency, rate or extent of tRNA export from nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of tRNA export from cell nucleus|positive regulation of tRNA export out of nucleus|positive regulation of tRNA transport from nucleus to cytoplasm|positive regulation of tRNA-nucleus export mah 2010-11-10T12:39:38Z biological_process owl:Class GO:0033784 biolink:NamedThing senecionine N-oxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + senecionine = H(2)O + NADP(+) + senecionine N-oxide. tmpzr1t_l9r_go_relaxed.owl SNO|senecionine,NADPH:oxygen oxidoreductase (N-oxide-forming) activity|senecionine monooxygenase (N-oxide-forming) activity KEGG_REACTION:R07373|MetaCyc:1.14.13.101-RXN|EC:1.14.13.101|RHEA:11420 molecular_function owl:Class GO:0043712 biolink:NamedThing 2-hydroxyisocaproate CoA-transferase activity Catalysis of the reaction: (R)-2-hydroxyisocaproate + isocaproyl-CoA = (R)-2-hydroxyisocaproyl-CoA + isocaproate. tmpzr1t_l9r_go_relaxed.owl (R)-2-hydroxyisocaproate CoA transferase activity|(R)-2-hydroxyisocaproate CoA-transferase activity molecular_function owl:Class GO:0019592 biolink:NamedThing mannitol catabolic process The chemical reactions and pathways resulting in the breakdown of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl mannitol degradation|mannitol breakdown|mannitol catabolism MetaCyc:MANNIDEG-PWY|MetaCyc:PWY-3861 biological_process owl:Class GO:0019594 biolink:NamedThing mannitol metabolic process The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl mannitol metabolism biological_process owl:Class GO:0046427 biolink:NamedThing positive regulation of receptor signaling pathway via JAK-STAT Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl up regulation of JAK-STAT cascade|positive regulation of STAT protein import into nucleus|positive regulation of STAT protein nuclear translocation|activation of JAK-STAT cascade|upregulation of JAK-STAT cascade|stimulation of JAK-STAT cascade|up-regulation of JAK-STAT cascade GO:2000366 biological_process owl:Class GO:0046425 biolink:NamedThing regulation of receptor signaling pathway via JAK-STAT Any process that modulates the frequency, rate or extent of receptor signaling via JAK-STAT. tmpzr1t_l9r_go_relaxed.owl STAT protein import into nucleus|regulation of STAT protein nuclear translocation|regulation of STAT protein import into nucleus https://github.com/geneontology/go-ontology/issues/13686 GO:2000364|GO:0007262 biological_process owl:Class GO:0043452 biolink:NamedThing cellular alkyne metabolic process The chemical reactions and pathways involving an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl alkyne metabolism biological_process owl:Class GO:0090095 biolink:NamedThing regulation of metanephric cap mesenchymal cell proliferation Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-13T10:40:32Z biological_process owl:Class GO:1901722 biolink:NamedThing regulation of cell proliferation involved in kidney development Any process that modulates the frequency, rate or extent of cell proliferation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl krc 2012-12-27T19:30:31Z biological_process owl:Class GO:0006868 biolink:NamedThing glutamine transport The directed movement of glutamine, 2-amino-4-carbamoylbutanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-glutamine transport GO:0015815 biological_process owl:Class GO:0032536 biolink:NamedThing regulation of cell projection size A process that modulates the size of a cell projection. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015417 biolink:NamedThing ABC-type polyamine transporter activity Catalysis of the reaction: ATP + H2O + polyamine(out) = ADP + phosphate + polyamine(in). tmpzr1t_l9r_go_relaxed.owl polyamine porter activity|polyamine-transporting ATPase activity|polyamine-importing ATPase activity|ATP-dependent polyamine transmembrane transporter activity|ATPase-coupled polyamine transmembrane transporter activity|spermidine porter activity|polyamine ABC transporter|spermidine-importing ATPase activity|ATPase-coupled spermidine transmembrane transporter activity MetaCyc:ABC-24-RXN|RHEA:29999|MetaCyc:3.6.3.31-RXN|EC:7.6.2.11 GO:0015595 molecular_function owl:Class GO:0042400 biolink:NamedThing ectoine catabolic process The chemical reactions and pathways resulting in the breakdown of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria. tmpzr1t_l9r_go_relaxed.owl ectoine breakdown|ectoine catabolism|ectoine degradation biological_process owl:Class GO:0097710 biolink:NamedThing viral terminase, small subunit The part of the viral terminase complex that acts as a phage DNA-recognition component and regulates the activity of the large subunit. The small subunit usually assembles as a heterooligomer with the large subunit. tmpzr1t_l9r_go_relaxed.owl virus terminase, small subunit This term should only be used when the small subunit consists of more than one polypeptide. pr 2016-06-07T12:45:00Z cellular_component owl:Class GO:0031299 biolink:NamedThing taurine-pyruvate aminotransferase activity Catalysis of the reaction: pyruvate + taurine = L-alanine + sulfoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl taurine:pyruvate aminotransferase activity|Tpa KEGG_REACTION:R05652|EC:2.6.1.77|MetaCyc:TAURINE-AMINOTRANSFERASE-RXN|RHEA:10420 molecular_function owl:Class GO:0000965 biolink:NamedThing mitochondrial RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA 3' end processing biological_process owl:Class GO:0035269 biolink:NamedThing protein O-linked mannosylation The transfer of mannose from dolichyl activated mannose to the hydroxyl group of a seryl or threonyl residue of a protein acceptor molecule, to form an O-linked protein-sugar linkage. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked mannosylation biological_process owl:Class GO:0033872 biolink:NamedThing [heparan sulfate]-glucosamine 3-sulfotransferase 3 activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate. tmpzr1t_l9r_go_relaxed.owl glucosaminyl 3-O-sulfotransferase 3a, 3b activity|isoform/isozyme 3a and 3b (3-OST-3A, 3-OST-3B, HS3ST3A, HS3ST3B)|heparin-glucosamine 3-sulfotransferase 3 activity|3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity|glucosaminyl 3-O-sulfotransferase 3 activity|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A activity|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3 activity|3-OST-3 MetaCyc:2.8.2.30-RXN|EC:2.8.2.30 molecular_function owl:Class GO:0034483 biolink:NamedThing heparan sulfate sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + heparan sulfate = adenosine 3',5'-bisphosphate + sulfated heparan sulfate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046110 biolink:NamedThing xanthine metabolic process The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. tmpzr1t_l9r_go_relaxed.owl xanthine metabolism biological_process owl:Class GO:0060833 biolink:NamedThing Wnt signaling pathway involved in animal/vegetal axis specification The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the specification of the animal/vegetal axis of an oocyte. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in animal/vegetal axis specification|Wnt- activated signaling pathway involved in animal/vegetal axis specification|Wnt receptor signaling pathway involved in animal/vegetal axis specification dph 2009-08-11T03:20:39Z biological_process owl:Class GO:0070409 biolink:NamedThing carbamoyl phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of carbamoyl phosphate, an intermediate in the urea cycle and other nitrogen compound metabolic pathways. tmpzr1t_l9r_go_relaxed.owl carbamoyl phosphate anabolism|carbamyl phosphate biosynthetic process|carbamoyl phosphate formation|carbamoyl phosphate biosynthesis|carbamoyl phosphate synthesis biological_process owl:Class GO:0097508 biolink:NamedThing xanthine DNA N-glycosylase activity DNA N-glycosylase activity acting on deaminated guanine (xanthine). tmpzr1t_l9r_go_relaxed.owl xanthine-DNA glycosylase activity pr 2013-09-26T16:03:10Z molecular_function owl:Class GO:0097506 biolink:NamedThing deaminated base DNA N-glycosylase activity DNA N-glycosylase activity acting on deaminated bases. tmpzr1t_l9r_go_relaxed.owl DNA glycosylase activity acting on deaminated bases|deaminated base DNA glycosylase activity pr 2013-09-26T16:00:40Z molecular_function owl:Class GO:1903618 biolink:NamedThing regulation of transdifferentiation Any process that modulates the frequency, rate or extent of transdifferentiation. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-19T11:24:57Z biological_process owl:Class GO:0110013 biolink:NamedThing positive regulation of aggregation involved in sorocarp development Any process that increases the frequency, rate or extent of aggregation involved in sorocarp development. Aggregation involved in sorocarp development is the process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug. tmpzr1t_l9r_go_relaxed.owl kmv 2017-05-10T12:52:46Z biological_process owl:Class GO:0001811 biolink:NamedThing negative regulation of type I hypersensitivity Any process that stops, prevents, or reduces the rate of type I hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl inhibition of type I hypersensitivity|downregulation of type I hypersensitivity|down regulation of type I hypersensitivity|down-regulation of type I hypersensitivity biological_process owl:Class GO:0003953 biolink:NamedThing NAD+ nucleosidase activity Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose. tmpzr1t_l9r_go_relaxed.owl NAD nucleosidase activity RHEA:16301|Reactome:R-HSA-8938076|Reactome:R-HSA-8870346 molecular_function owl:Class GO:0016922 biolink:NamedThing nuclear receptor binding Binding to a nuclear receptor protein. Nuclear receptor proteins are DNA-binding transcription factors which are regulated by binding to a ligand. tmpzr1t_l9r_go_relaxed.owl ligand-dependent nuclear receptor interactor activity|nuclear hormone receptor binding|steroid hormone receptor binding|ligand-dependent nuclear receptor binding GO:0035258|GO:0035257 molecular_function owl:Class GO:0061629 biolink:NamedThing RNA polymerase II-specific DNA-binding transcription factor binding Binding to a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription factor binding|RNA polymerase II sequence-specific DNA-binding transcription factor binding|RNA polymerase II repressing transcription factor binding|RNA polymerase II sequence-specific DNA binding transcription factor binding|RNA polymerase II activating transcription factor binding https://github.com/geneontology/go-ontology/issues/19354 dph 2014-05-15T09:12:24Z GO:0001103|GO:0001102|GO:0001085 molecular_function owl:Class GO:0014053 biolink:NamedThing negative regulation of gamma-aminobutyric acid secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of gamma-aminobutyric acid. tmpzr1t_l9r_go_relaxed.owl down regulation of gamma-aminobutyric acid secretion|downregulation of gamma-aminobutyric acid secretion|down-regulation of gamma-aminobutyric acid secretion|inhibition of gamma-aminobutyric acid secretion|negative regulation of GABA secretion biological_process owl:Class GO:0034239 biolink:NamedThing regulation of macrophage fusion Any process that modulates the frequency, rate or extent of macrophage fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900925 biolink:NamedThing positive regulation of glycine import across plasma membrane Any process that activates or increases the frequency, rate or extent of glycine import. tmpzr1t_l9r_go_relaxed.owl up regulation of glycine import|upregulation of glycine import|up-regulation of glycine import|activation of glycine import|positive regulation of glycine import al 2012-06-13T07:40:40Z biological_process owl:Class GO:0051957 biolink:NamedThing positive regulation of amino acid transport Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl positive regulation of amino acid transmembrane transport|up regulation of amino acid transport|stimulation of amino acid transport|activation of amino acid transport|up-regulation of amino acid transport|upregulation of amino acid transport biological_process owl:Class GO:0070234 biolink:NamedThing positive regulation of T cell apoptotic process Any process that activates or increases the frequency, rate or extent of T cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of T cell apoptosis|positive regulation of T-lymphocyte apoptosis|upregulation of T cell apoptosis|positive regulation of T lymphocyte apoptosis|positive regulation of programmed cell death of T cells by apoptosis|up-regulation of T cell apoptosis|positive regulation of T-cell apoptosis|stimulation of T cell apoptosis|up regulation of T cell apoptosis|activation of T cell apoptosis biological_process owl:Class GO:0051900 biolink:NamedThing regulation of mitochondrial depolarization Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090337 biolink:NamedThing regulation of formin-nucleated actin cable assembly Any process that modulates the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-01T03:26:31Z biological_process owl:Class GO:0070866 biolink:NamedThing sterol-dependent protein binding Binding to a protein or protein complex in the presence of sterols. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-19T01:43:35Z molecular_function owl:Class GO:0002631 biolink:NamedThing regulation of granuloma formation Any process that modulates the frequency, rate, or extent of granuloma formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901598 biolink:NamedThing (-)-pinoresinol metabolic process The chemical reactions and pathways involving (-)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (-)-pinoresinol metabolism tb 2012-11-08T01:15:57Z biological_process owl:Class GO:0032032 biolink:NamedThing myosin I tail binding Binding to the tail region of a myosin I heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032029 biolink:NamedThing myosin tail binding Binding to the tail region of a myosin heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030172 biolink:NamedThing troponin C binding Binding to troponin C, the calcium-binding subunit of the troponin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006325 biolink:NamedThing chromatin organization Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin. tmpzr1t_l9r_go_relaxed.owl chromatin modification|chromatin organisation|establishment or maintenance of chromatin architecture GO:0016568 biological_process owl:Class GO:0035997 biolink:NamedThing rhabdomere microvillus membrane The portion of the plasma membrane surrounding a microvillus of a rhabdomere. tmpzr1t_l9r_go_relaxed.owl bf 2011-09-01T02:24:20Z cellular_component owl:Class GO:0031528 biolink:NamedThing microvillus membrane The portion of the plasma membrane surrounding a microvillus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035485 biolink:NamedThing adenine/guanine mispair binding Binding to a double-stranded DNA region containing an A/G mispair. tmpzr1t_l9r_go_relaxed.owl guanine-adenine mispair binding|G/A mispair binding|A/G mispair binding bf 2010-04-23T10:55:43Z molecular_function owl:Class GO:1905463 biolink:NamedThing negative regulation of DNA duplex unwinding Any process that stops, prevents or reduces the frequency, rate or extent of DNA duplex unwinding. tmpzr1t_l9r_go_relaxed.owl negative regulation of DNA unwinding|down-regulation of DNA unwinding|down regulation of duplex DNA melting|downregulation of DNA unwinding|inhibition of duplex DNA melting|downregulation of duplex DNA melting|down-regulation of duplex DNA melting|inhibition of DNA duplex unwinding|down regulation of DNA unwinding|down-regulation of DNA duplex unwinding|negative regulation of duplex DNA melting|down regulation of DNA duplex unwinding|downregulation of DNA duplex unwinding|inhibition of DNA unwinding ans 2016-09-19T11:58:48Z biological_process owl:Class GO:2001251 biolink:NamedThing negative regulation of chromosome organization Any process that stops, prevents or reduces the frequency, rate or extent of chromosome organization. tmpzr1t_l9r_go_relaxed.owl negative regulation of chromosome organisation|negative regulation of maintenance of genome integrity|negative regulation of chromosome organization and biogenesis|negative regulation of nuclear genome maintenance yaf 2011-12-02T02:01:20Z biological_process owl:Class GO:0006570 biolink:NamedThing tyrosine metabolic process The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl tyrosine metabolism Wikipedia:Tyrosine|UM-BBD_pathwayID:tyr biological_process owl:Class GO:1990274 biolink:NamedThing mitotic actomyosin contractile ring disassembly Any disaggregation of an actomyosin contractile ring into its constituent components that is involved in a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic CAR disassembly|mitotic actomyosin ring disassembly|mitotic contractile actomyosin ring disassembly|mitotic constriction ring disassembly|mitotic cytokinetic ring disassembly mah 2014-01-16T10:25:42Z biological_process owl:Class GO:1903507 biolink:NamedThing negative regulation of nucleic acid-templated transcription Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. tmpzr1t_l9r_go_relaxed.owl downregulation of nucleic acid-templated transcription|down regulation of nucleic acid-templated transcription|inhibition of nucleic acid-templated transcription|down-regulation of nucleic acid-templated transcription pr 2014-10-01T14:44:56Z biological_process owl:Class GO:1902679 biolink:NamedThing negative regulation of RNA biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of RNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of RNA biosynthesis|down regulation of RNA biosynthetic process|down-regulation of RNA anabolism|downregulation of RNA biosynthetic process|down-regulation of RNA biosynthetic process|down regulation of RNA formation|inhibition of RNA biosynthesis|downregulation of RNA formation|down-regulation of RNA synthesis|negative regulation of RNA formation|negative regulation of RNA synthesis|inhibition of RNA biosynthetic process|down regulation of RNA biosynthesis|negative regulation of RNA biosynthesis|downregulation of RNA synthesis|inhibition of RNA synthesis|down regulation of RNA anabolism|negative regulation of RNA anabolism|down-regulation of RNA formation|inhibition of RNA anabolism|downregulation of RNA anabolism|down regulation of RNA synthesis|inhibition of RNA formation|down-regulation of RNA biosynthesis jl 2014-02-05T16:32:01Z biological_process owl:Class GO:0086070 biolink:NamedThing SA node cell to atrial cardiac muscle cell communication The process that mediates interactions between an SA node cardiomyocyte and its surroundings that contributes to the process of the SA node cardiomyocyte communicating with an atrial cardiomyocyte in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl sinus node cardiomyocyte to atrial cardiomyocyte communication|SA node cardiomyocyte to atrial cardiomyocyte communication|SAN cardiomyocyte to atrial cardiomyocyte communication|sinoatrial node cardiomyocyte to atrial cardiomyocyte communication|SA node cardiac muscle cell to atrial cardiac muscle cell communication dph 2011-11-22T09:32:45Z biological_process owl:Class GO:1990169 biolink:NamedThing stress response to copper ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by a copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl stress response to copper|response to copper toxicity|response to copper ion stress pr 2013-08-14T12:52:05Z biological_process owl:Class GO:0030788 biolink:NamedThing precorrin-2 C20-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + H(+) + precorrin-3A. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine--precorrin-2 methyltransferase activity|S-adenosyl-L-methionine:precorrin-4 C20-methyltransferase activity KEGG_REACTION:R03948|EC:2.1.1.130|MetaCyc:2.1.1.130-RXN|RHEA:16841 molecular_function owl:Class GO:0019972 biolink:NamedThing interleukin-12 binding Binding to interleukin-12. tmpzr1t_l9r_go_relaxed.owl IL-12 binding molecular_function owl:Class GO:1904581 biolink:NamedThing negative regulation of intracellular mRNA localization Any process that stops, prevents or reduces the frequency, rate or extent of intracellular mRNA localization. tmpzr1t_l9r_go_relaxed.owl down-regulation of establishment and maintenance of intracellular RNA localization|inhibition of intracellular mRNA localization|negative regulation of intracellular mRNA localisation|negative regulation of establishment and maintenance of intracellular RNA localization|down-regulation of intracellular mRNA localisation|inhibition of establishment and maintenance of intracellular RNA localization|down-regulation of mRNA positioning, intracellular|negative regulation of intracellular mRNA positioning|inhibition of mRNA localization, intracellular|down regulation of establishment and maintenance of intracellular RNA localization|inhibition of mRNA positioning, intracellular|negative regulation of mRNA localization, intracellular|downregulation of intracellular mRNA localisation|down-regulation of intracellular mRNA positioning|downregulation of intracellular mRNA positioning|down regulation of mRNA positioning, intracellular|down regulation of intracellular mRNA localisation|negative regulation of mRNA positioning, intracellular|downregulation of intracellular mRNA localization|down-regulation of intracellular mRNA localization|down-regulation of mRNA localization, intracellular|downregulation of mRNA localization, intracellular|down regulation of mRNA localization, intracellular|downregulation of establishment and maintenance of intracellular RNA localization|downregulation of mRNA positioning, intracellular|down regulation of intracellular mRNA positioning|inhibition of intracellular mRNA positioning|down regulation of intracellular mRNA localization|inhibition of intracellular mRNA localisation sl 2015-08-19T23:40:32Z biological_process owl:Class GO:1904580 biolink:NamedThing regulation of intracellular mRNA localization Any process that modulates the frequency, rate or extent of intracellular mRNA localization. tmpzr1t_l9r_go_relaxed.owl regulation of intracellular mRNA positioning|regulation of mRNA positioning, intracellular|regulation of intracellular mRNA localisation|regulation of mRNA localization, intracellular|regulation of establishment and maintenance of intracellular RNA localization sl 2015-08-19T23:40:25Z biological_process owl:Class GO:0046152 biolink:NamedThing ommochrome metabolic process The chemical reactions and pathways involving ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye. tmpzr1t_l9r_go_relaxed.owl ommochrome metabolism biological_process owl:Class GO:0071469 biolink:NamedThing cellular response to alkaline pH Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH > 7. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl cellular response to basic pH|cellular response to alkalinity mah 2009-12-18T11:42:47Z biological_process owl:Class GO:0010446 biolink:NamedThing response to alkaline pH Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH > 7. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl response to basic pH|response to alkalinity biological_process owl:Class GO:1904495 biolink:NamedThing negative regulation of substance P secretion, neurotransmission Any process that stops, prevents or reduces the frequency, rate or extent of substance P secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl down-regulation of substance P secretion, neurotransmission|inhibition of substance P secretion, neurotransmission|down regulation of substance P secretion, neurotransmission|downregulation of substance P secretion, neurotransmission sl 2015-07-21T19:09:10Z biological_process owl:Class GO:0021632 biolink:NamedThing optic nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the optic nerve to attain its fully functional state. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain. tmpzr1t_l9r_go_relaxed.owl CN II maturation biological_process owl:Class GO:1900848 biolink:NamedThing positive regulation of naphtho-gamma-pyrone biosynthetic process Any process that activates or increases the frequency, rate or extent of naphtho-gamma-pyrone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of naphtho-gamma-pyrone biosynthetic process|up regulation of naphtho-gamma-pyrone biosynthetic process|activation of naphtho-gamma-pyrone biosynthetic process|up-regulation of naphtho-gamma-pyrone biosynthetic process di 2012-06-07T09:43:11Z biological_process owl:Class GO:1900846 biolink:NamedThing regulation of naphtho-gamma-pyrone biosynthetic process Any process that modulates the frequency, rate or extent of naphtho-gamma-pyrone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of naphtho-gamma-pyrones synthesis|regulation of naphtho-gamma-pyrone biosynthesis|regulation of naphtho-gamma-pyrone formation|regulation of naphtho-gamma-pyrone anabolism|regulation of naphtho-gamma-pyrones formation|regulation of naphtho-gamma-pyrones biosynthesis|regulation of naphtho-gamma-pyrones anabolism|regulation of naphtho-gamma-pyrones biosynthetic process|regulation of naphtho-gamma-pyrone synthesis di 2012-06-07T09:42:41Z biological_process owl:Class GO:0044785 biolink:NamedThing metaphase/anaphase transition of meiotic cell cycle The cell cycle process in which a cell progresses from metaphase to anaphase as part of meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic metaphase/anaphase transition jl 2013-05-02T13:11:28Z biological_process owl:Class GO:0044771 biolink:NamedThing meiotic cell cycle phase transition The cell cycle process by which a cell commits to entering the next meiotic cell cycle phase. tmpzr1t_l9r_go_relaxed.owl cell cycle transition jl 2013-02-28T13:08:17Z biological_process owl:Class GO:1901092 biolink:NamedThing positive regulation of protein tetramerization Any process that activates or increases the frequency, rate or extent of protein tetramerization. tmpzr1t_l9r_go_relaxed.owl up regulation of protein tetramer assembly|positive regulation of protein tetramer assembly|up-regulation of protein tetramer biosynthetic process|positive regulation of protein tetramer biosynthetic process|upregulation of protein tetramer biosynthetic process|up regulation of protein tetramerization|positive regulation of protein tetramer formation|activation of protein tetramer biosynthetic process|upregulation of protein tetramer assembly|up regulation of protein tetramer formation|upregulation of protein tetramerization|up-regulation of protein tetramer biosynthesis|up-regulation of protein tetramerization|activation of protein tetramer formation|up regulation of protein tetramer biosynthesis|up-regulation of protein tetramer formation|up regulation of protein tetramer biosynthetic process|activation of protein tetramer biosynthesis|up-regulation of protein tetramer assembly|upregulation of protein tetramer formation|activation of protein tetramer assembly|upregulation of protein tetramer biosynthesis|activation of protein tetramerization|positive regulation of protein tetramer biosynthesis pm 2012-07-06T12:51:32Z biological_process owl:Class GO:0002734 biolink:NamedThing negative regulation of myeloid dendritic cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl downregulation of myeloid dendritic cell cytokine production|down-regulation of myeloid dendritic cell cytokine production|inhibition of myeloid dendritic cell cytokine production|down regulation of myeloid dendritic cell cytokine production biological_process owl:Class GO:0090127 biolink:NamedThing positive regulation of synapse maturation by synaptic transmission Any process that increases the extent of synaptic maturation as a result of the communication from a pre-synaptic cell to a post-synaptic cell across a synapse. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T02:57:21Z biological_process owl:Class GO:0034215 biolink:NamedThing thiamine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamine(out) + H+(out) = thiamine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl thiamin:proton symporter activity|thiamin:hydrogen symporter activity|thiamine:hydrogen symporter activity molecular_function owl:Class GO:0050758 biolink:NamedThing regulation of thymidylate synthase biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase. tmpzr1t_l9r_go_relaxed.owl regulation of thymidylate synthase biosynthesis|regulation of thymidylate synthase synthesis|regulation of thymidylate synthase formation|regulation of thymidylate synthase anabolism biological_process owl:Class GO:0018352 biolink:NamedThing protein-pyridoxal-5-phosphate linkage The formation of a linkage between a protein amino acid and pyridoxal-5-phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901041 biolink:NamedThing positive regulation of peptide antigen transport Any process that activates or increases the frequency, rate or extent of peptide antigen transport. tmpzr1t_l9r_go_relaxed.owl up regulation of peptide antigen transport|upregulation of peptide antigen transport|up-regulation of peptide antigen transport|activation of peptide antigen transport bf 2012-06-22T04:08:26Z biological_process owl:Class GO:0021766 biolink:NamedThing hippocampus development The progression of the hippocampus over time from its initial formation until its mature state. tmpzr1t_l9r_go_relaxed.owl hippocampal formation development biological_process owl:Class GO:0047198 biolink:NamedThing cysteine-S-conjugate N-acetyltransferase activity Catalysis of the reaction: S-substituted L-cysteine + acetyl-CoA = S-substituted N-acetyl-L-cysteine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:S-substituted L-cysteine N-acetyltransferase activity RHEA:19213|EC:2.3.1.80|MetaCyc:2.3.1.80-RXN|Reactome:R-HSA-5433066|KEGG_REACTION:R04950 molecular_function owl:Class GO:0070184 biolink:NamedThing mitochondrial tyrosyl-tRNA aminoacylation The process of coupling tyrosine to tyrosyl-tRNA in a mitochondrion, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075526 biolink:NamedThing cap snatching A transcription initiation process during which a nucleotide sequence between 10 and 20 nucleotides in size is cleaved from the 5' end of host mRNAs by a viral RNA-dependent polymerase. The capped leader sequence obtained is subsequently used to prime transcription on the viral genome, which ultimately leads to the synthesis of capped, translatable viral mRNAs. tmpzr1t_l9r_go_relaxed.owl cap snatching involved in viral mRNA transcription VZ:839 jl 2011-08-04T01:19:00Z biological_process owl:Class GO:0051029 biolink:NamedThing rRNA transport The directed movement of rRNA, ribosomal ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018015 biolink:NamedThing N-terminal peptidyl-phenylalanine methylation The methylation of the N-terminal phenylalanine of proteins to form the derivative N-methyl-L-phenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0065 biological_process owl:Class GO:0031319 biolink:NamedThing detection of cAMP The series of events in which a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus is received by a cell and converted into a molecular signal; cAMP is the nucleotide cyclic AMP. tmpzr1t_l9r_go_relaxed.owl cAMP detection|detection of 3',5' cAMP|cAMP sensing|detection of 3',5'-cAMP|cyclic AMP detection|detection of adenosine 3',5'-cyclophosphate|detection of cyclic AMP|3',5'-cAMP sensing|3',5'-cAMP detection biological_process owl:Class GO:1902909 biolink:NamedThing negative regulation of melanosome transport Any process that stops, prevents or reduces the frequency, rate or extent of melanosome transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of melanosome transport|downregulation of melanosome transport|inhibition of melanosome transport|down regulation of melanosome transport als 2014-04-17T11:40:28Z biological_process owl:Class GO:1902908 biolink:NamedThing regulation of melanosome transport Any process that modulates the frequency, rate or extent of melanosome transport. tmpzr1t_l9r_go_relaxed.owl als 2014-04-17T11:40:16Z biological_process owl:Class GO:1901537 biolink:NamedThing positive regulation of DNA demethylation Any process that activates or increases the frequency, rate or extent of DNA demethylation. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA demethylation|up regulation of DNA demethylation|upregulation of DNA demethylation|activation of DNA demethylation jl 2012-10-24T13:52:59Z biological_process owl:Class GO:1904591 biolink:NamedThing positive regulation of protein import Any process that activates or increases the frequency, rate or extent of protein import. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein import|activation of protein import|up regulation of protein import|activation of protein uptake|upregulation of protein import|upregulation of protein uptake|up regulation of protein uptake|positive regulation of protein uptake|up-regulation of protein uptake sl 2015-08-20T21:26:42Z biological_process owl:Class GO:1904589 biolink:NamedThing regulation of protein import Any process that modulates the frequency, rate or extent of protein import. tmpzr1t_l9r_go_relaxed.owl regulation of protein uptake sl 2015-08-20T21:26:30Z biological_process owl:Class GO:0140682 biolink:NamedThing histone H3-di/monomethyl-lysine-4 FAD-dependent demethylase activity Catalysis of the removal of a methyl group from a di- or a monomethyl-lysine residue at position 4 of the histone H3 protein. This is a flavin adenine dinucleotide (FAD)-dependent amine oxidation reaction. tmpzr1t_l9r_go_relaxed.owl histone H3K4me demethylase activity|histone H3K4me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 EC:1.14.99.66|RHEA:60244 pg 2021-07-08T15:45:22Z molecular_function owl:Class GO:0072266 biolink:NamedThing metanephric capsule formation The developmental process pertaining to the initial formation of a metanephric capsule from unspecified parts. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:56:35Z biological_process owl:Class GO:0036316 biolink:NamedThing SREBP-SCAP complex retention in endoplasmic reticulum Any process in which the SREBP-SCAP complex is maintained in the endoplasmic reticulum and prevented from moving elsewhere. The SREBP-SCAP complex is formed by the association of sterol regulatory element binding protein (SREBP) and SREBP-cleavage-activating protein (SCAP). In the absence of sterols, the SREBP-SCAP complex is packaged into COPII vesicles and travels to the Golgi apparatus to be processed. In the presence of sterols, the complex binds ER-resident proteins such as INSIG, which retain the complex in the ER. tmpzr1t_l9r_go_relaxed.owl Consider also annotating to the cellular component term: SREBP-SCAP-Insig complex ; GO:0032937. bf 2012-08-21T14:53:08Z biological_process owl:Class GO:0004337 biolink:NamedThing geranyltranstransferase activity Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = 2-trans,6-trans-farnesyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl transferase I|geranyl-diphosphate:isopentenyl-diphosphate geranyltranstransferase activity|farnesylpyrophosphate synthetase activity|farnesyl-diphosphate synthase activity|FPP synthetase activity|farnesyl diphosphate synthetase activity|geranyltransferase activity|farnesyl pyrophosphate synthetase activity MetaCyc:FPPSYN-RXN|EC:2.5.1.10|Reactome:R-HSA-8870469|RHEA:19361|KEGG_REACTION:R02003|Reactome:R-HSA-191303 Note that this is the second step in the formation of farnesyl diphosphate. The first step is 'dimethylallyltransferase activity ; GO:0004161'. Consider also annotating to the biological process term 'farnesyl diphosphate biosynthetic process ; GO:0045337'. molecular_function owl:Class GO:1990781 biolink:NamedThing response to immobilization stress combined with electrical stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus given while being held immobile. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T20:30:42Z biological_process owl:Class GO:0051602 biolink:NamedThing response to electrical stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus. tmpzr1t_l9r_go_relaxed.owl response to electricity biological_process owl:Class GO:1990012 biolink:NamedThing complex laminated body A cytoplasmic inclusion body found in some lateral geniculate neurons and composed of sheets of tubules (25 nm in diameter) separated by dense material (about 75 nm wide), which together with the tubules whorl give a structure resembling a fingerprint. tmpzr1t_l9r_go_relaxed.owl CLB NIF_Subcellular:nlx_151681 pr 2012-12-12T14:18:15Z cellular_component owl:Class GO:1990011 biolink:NamedThing laminated body Inclusion body characterized by regularly spaced sheets of tubules arranged in a whorl pattern resembling a fingerprint. Laminated bodies have been observed in neurons of the lateral geniculate nucleus. tmpzr1t_l9r_go_relaxed.owl laminated inclusion body NIF_Subcellular:sao506721981 pr 2012-12-12T14:12:21Z cellular_component owl:Class GO:0016580 biolink:NamedThing Sin3 complex A multiprotein complex that functions broadly in eukaryotic organisms as a transcriptional repressor of protein-coding genes, through the gene-specific deacetylation of histones. Amongst its subunits, the Sin3 complex contains Sin3-like proteins, and a number of core proteins that are shared with the NuRD complex (including histone deacetylases and histone binding proteins). The Sin3 complex does not directly bind DNA itself, but is targeted to specific genes through protein-protein interactions with DNA-binding proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070822 biolink:NamedThing Sin3-type complex Any of a number of evolutionarily conserved histone deacetylase complexes (HDACs) containing a core consisting of a paired amphipathic helix motif protein (e.g. Sin3p in S. cerevisiae, Pst1 in S. pombe or Sin3A in mammals) at least one class I histone deacetylase (e.g. Rpd3p in S. cerevisiae, Clr6 in S. pombe, or HDAC1 and HDAC2 in mammals), and at least one WD40 repeat protein (e.g. Ume1p in S. cerevisiae, Prw1 in S. pombe, or RbAp46 and RbAp48 in mammals). These complexes also contain a variable number of other proteins that direct histone binding, DNA binding, or add other functionality to the complex. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-20T04:32:33Z cellular_component owl:Class GO:0032467 biolink:NamedThing positive regulation of cytokinesis Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells. tmpzr1t_l9r_go_relaxed.owl up regulation of cytokinesis|up-regulation of cytokinesis|positive regulation of cell cycle cytokinesis|activation of cytokinesis|upregulation of cytokinesis|stimulation of cytokinesis GO:0071777 biological_process owl:Class GO:0018562 biolink:NamedThing 3,4-dihydroxyfluorene 4,4-alpha-dioxygenase activity Catalysis of the reaction: 3,4-dihydroxyfluorene + O2 = 2-hydroxy-4-(1-oxo-1,3-dihydro-2H-inden-2-ylidene) but-2-enoic acid. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0415 molecular_function owl:Class GO:0019117 biolink:NamedThing dihydroxyfluorene dioxygenase activity Catalysis of the reaction: a dihydroxyfluorene + O2 = the corresponding 2-hydroxy-4-(oxo-1,3-dihydro-2H-inden-ylidene) but-2-enoic acid. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.- molecular_function owl:Class GO:0072340 biolink:NamedThing cellular lactam catabolic process The chemical reactions and pathways resulting in the breakdown of lactams, any cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. tmpzr1t_l9r_go_relaxed.owl cellular lactam degradation|cellular lactam catabolism|cellular lactam breakdown mah 2010-11-04T04:33:22Z biological_process owl:Class GO:0016041 biolink:NamedThing glutamate synthase (ferredoxin) activity Catalysis of the reaction: 2 L-glutamate + 2 oxidized ferredoxin = L-glutamine + 2-oxoglutarate + 2 reduced ferredoxin + 2 H+. This is a two-step reaction: (a) L-glutamate + NH3 = L-glutamine + H2O, (b) L-glutamate + 2 oxidized ferredoxin + H2O = NH3 + 2-oxoglutarate + 2 reduced ferredoxin + 2 H+. tmpzr1t_l9r_go_relaxed.owl L-glutamate:ferredoxin oxidoreductase (transaminating)|ferredoxin-dependent glutamate synthase activity|ferredoxin-glutamate synthase activity|glutamate synthase (ferredoxin-dependent) MetaCyc:GLUTAMATE-SYNTHASE-FERREDOXIN-RXN|MetaCyc:PWY-4341|EC:1.4.7.1|RHEA:12128 molecular_function owl:Class GO:0015930 biolink:NamedThing glutamate synthase activity Catalysis of the formation of L-glutamine and 2-oxoglutarate from L-glutamate, using NADH, NADPH or ferredoxin as hydrogen acceptors. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004064 biolink:NamedThing arylesterase activity Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate. tmpzr1t_l9r_go_relaxed.owl paraoxonase activity|aryl-ester hydrolase|A-esterase activity|aromatic esterase UM-BBD_reactionID:r0757|MetaCyc:ARYLESTERASE-RXN|EC:3.1.1.2|RHEA:17309 molecular_function owl:Class GO:0010246 biolink:NamedThing rhamnogalacturonan I biosynthetic process The chemical reactions and pathways resulting in the formation of rhamnogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan I anabolism|rhamnogalacturonan I biosynthesis|rhamnogalacturonan I formation|rhamnogalacturonan I synthesis biological_process owl:Class GO:0034494 biolink:NamedThing microneme lumen The volume enclosed by the microneme membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015822 biolink:NamedThing ornithine transport The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-ornithine transport biological_process owl:Class GO:1901887 biolink:NamedThing 2-hydroxybenzoyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of 2-hydroxybenzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-hydroxybenzoyl-CoA anabolism|2-hydroxybenzoyl-CoA biosynthesis|2-hydroxybenzoyl-CoA synthesis|2-hydroxybenzoyl-CoA formation ms 2013-02-06T14:06:12Z biological_process owl:Class GO:1901885 biolink:NamedThing 2-hydroxybenzoyl-CoA metabolic process The chemical reactions and pathways involving 2-hydroxybenzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-hydroxybenzoyl-CoA metabolism ms 2013-02-06T14:06:03Z biological_process owl:Class GO:0048462 biolink:NamedThing carpel formation The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048431 biological_process owl:Class GO:0008656 biolink:NamedThing cysteine-type endopeptidase activator activity involved in apoptotic process Binds to and increases the rate of proteolysis catalyzed by a cysteine-type endopeptidase involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl caspase activator activity Reactome:R-HSA-205117|Reactome:R-HSA-449073 Examples of this are 1) granzymes that may bind to initiator caspases and cleave them, and 2) already active caspases, e.g. caspase 9, that cleave effector caspases. molecular_function owl:Class GO:0016505 biolink:NamedThing peptidase activator activity involved in apoptotic process Binds to and increases the activity of a peptidase that is involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl apoptotic protease activator activity molecular_function owl:Class GO:0140588 biolink:NamedThing chromatin looping A chromatin organization process that starts with the loading of an extrusion motor (by an SMC family complex) onto the chromatin, followed by chromatin extrusion that stops at loop anchoring sites on the chromosome. tmpzr1t_l9r_go_relaxed.owl chromatin folding|chromatin loop assembly|DNA looping|DNA loop extrusion https://github.com/geneontology/go-ontology/issues/22109|https://github.com/geneontology/go-ontology/issues/20204 To describe the molecular function associated with chromatin looping, consider 'chromatin extrusion motor activity'; GO:0140584. pg 2021-02-04T14:55:20Z biological_process owl:Class GO:0043409 biolink:NamedThing negative regulation of MAPK cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitogen activated protein kinase kinase kinase cascade|down-regulation of MAPKKK cascade|negative regulation of MAP kinase cascade|down-regulation of MAPK cascade|negative regulation of mitogen-activated protein kinase cascade|negative regulation of MAPKKK cascade|inhibition of MAPK cascade|down regulation of MAPKKK cascade|downregulation of MAPK cascade|negative regulation of mitogen activated protein kinase cascade|downregulation of MAPKKK cascade|inhibition of MAPKKK cascade|down regulation of MAPK cascade|negative regulation of MAP kinase kinase kinase cascade|negative regulation of mitogen-activated protein kinase kinase kinase cascade biological_process owl:Class GO:0034370 biolink:NamedThing triglyceride-rich lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl triacylglycerol-rich lipoprotein particle remodeling biological_process owl:Class GO:0033321 biolink:NamedThing homomethionine metabolic process The chemical reactions and pathways involving homomethionine, a non-protein amino acid synthesized from methionine via chain elongation. tmpzr1t_l9r_go_relaxed.owl homomethionine metabolism biological_process owl:Class GO:0009037 biolink:NamedThing tyrosine-based site-specific recombinase activity Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences; occurs through a phosphotyrosyl intermediate in which the target sequence is first cleaved by the nucleophilic attack by a tyrosine in the active site. tmpzr1t_l9r_go_relaxed.owl tyrosine recombinase|site-specific tyrosine recombinase activity molecular_function owl:Class GO:0009009 biolink:NamedThing site-specific recombinase activity Catalysis of the formation of new phosphodiester bonds between a pair of short, unique target DNA sequences. tmpzr1t_l9r_go_relaxed.owl RecA-family recombinase activity https://github.com/geneontology/go-ontology/issues/3917 Note that this term is not a child of 'recombinase activity ; GO:0000150' because the latter represents activities that do not break or form phosphodiester bonds. molecular_function owl:Class GO:0019166 biolink:NamedThing trans-2-enoyl-CoA reductase (NADPH) activity Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl reductase, trans-enoyl coenzyme A|acyl-CoA:NADP+ trans-2-oxidoreductase activity|NADPH-dependent trans-2-enoyl-CoA reductase activity Reactome:R-HSA-8952873|Reactome:R-HSA-6786720|MetaCyc:TRANSENOYLCOARED-RXN|Reactome:R-HSA-6809810|RHEA:33763|EC:1.3.1.38 molecular_function owl:Class GO:0046709 biolink:NamedThing IDP catabolic process The chemical reactions and pathways resulting in the breakdown of IDP, inosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl IDP catabolism|IDP breakdown|IDP degradation biological_process owl:Class GO:0046707 biolink:NamedThing IDP metabolic process The chemical reactions and pathways involving IDP, inosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl IDP metabolism biological_process owl:Class GO:0005375 biolink:NamedThing copper ion transmembrane transporter activity Enables the transfer of copper (Cu) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl intracellular copper ion transporter|copper uptake transmembrane transporter activity|plasma membrane copper transporter RHEA:28703|Reactome:R-HSA-437300 GO:0015088|GO:0005379|GO:0005378|GO:0005380 molecular_function owl:Class GO:0051359 biolink:NamedThing peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine The formation of the fluorescent protein FP611 chromophore cross-link from the alpha-carboxyl carbon of residue n, a methionine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. This modification is found in the GFP-like fluorescent chromoprotein from the sea anemone Entacmaea quadricolor. tmpzr1t_l9r_go_relaxed.owl biosynthetic process of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine|biosynthesis of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine RESID:AA0379 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0018201 biolink:NamedThing peptidyl-glycine modification The modification of peptidyl-glycine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018275 biolink:NamedThing N-terminal peptidyl-cysteine acetylation The acetylation of the N-terminal cysteine of proteins to form the derivative N-acetyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-cysteine N-acetylation RESID:AA0043 GO:0017191 biological_process owl:Class GO:0018533 biolink:NamedThing peptidyl-cysteine acetylation The acetylation of peptidyl-cysteine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903316 biolink:NamedThing positive regulation of nitrogen cycle metabolic process Any process that activates or increases the frequency, rate or extent of nitrogen cycle metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of nitrogen cycle metabolic process|up-regulation of nitrogen cycle metabolic process|upregulation of nitrogen cycle metabolic process|up regulation of nitrogen cycle metabolic process vw 2014-08-18T12:57:50Z biological_process owl:Class GO:1904464 biolink:NamedThing regulation of matrix metallopeptidase secretion Any process that modulates the frequency, rate or extent of matrix metallopeptidase secretion. tmpzr1t_l9r_go_relaxed.owl regulation of MMP secretion|regulation of matrix metalloproteinase secretion sl 2015-07-09T19:46:17Z biological_process owl:Class GO:0043179 biolink:NamedThing rhythmic excitation Any process involved in the generation of rhythmic, synchronous excitatory synaptic inputs in a neural circuit. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060024 biolink:NamedThing rhythmic synaptic transmission Any process involved in the generation of rhythmic, synchronous synaptic inputs in a neural circuit. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098876 biolink:NamedThing vesicle-mediated transport to the plasma membrane The directed movement of substances to the plasma membrane in transport vesicles that fuse with the plasma membrane by exocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010366 biolink:NamedThing negative regulation of ethylene biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of an ethylene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900912 biolink:NamedThing negative regulation of olefin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of olefin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of olefin biosynthesis|down-regulation of olefin biosynthetic process|down regulation of olefin anabolism|down regulation of olefin biosynthetic process|downregulation of olefin biosynthesis|inhibition of olefin synthesis|inhibition of olefin biosynthesis|downregulation of olefin biosynthetic process|negative regulation of olefin synthesis|inhibition of olefin biosynthetic process|down-regulation of olefin formation|downregulation of olefin synthesis|downregulation of olefin anabolism|negative regulation of olefin anabolism|down-regulation of olefin anabolism|down regulation of olefin synthesis|down-regulation of olefin biosynthesis|down-regulation of olefin synthesis|negative regulation of olefin formation|downregulation of olefin formation|inhibition of olefin formation|down regulation of olefin formation|down regulation of olefin biosynthesis|inhibition of olefin anabolism tt 2012-06-13T04:20:30Z biological_process owl:Class GO:0046932 biolink:NamedThing sodium-transporting ATP synthase activity, rotational mechanism Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate + Na+(out) => ATP + H2O + Na+(in), by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl sodium-transporting two-sector ATPase activity|sodium-translocating F-type ATPase activity https://github.com/geneontology/go-ontology/issues/19380|https://github.com/geneontology/go-ontology/issues/21796 TC:3.A.2.1.2|EC:7.2.2.1|RHEA:58156|RHEA:58158|MetaCyc:3.6.3.15-RXN molecular_function owl:Class GO:0046829 biolink:NamedThing negative regulation of RNA import into nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of RNA from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl down-regulation of RNA import into nucleus|negative regulation of RNA import into cell nucleus|downregulation of RNA import into nucleus|inhibition of RNA import into nucleus|down regulation of RNA import into nucleus|negative regulation of RNA transport from cytoplasm to nucleus|negative regulation of RNA-nucleus import biological_process owl:Class GO:0046828 biolink:NamedThing regulation of RNA import into nucleus Any process that modulates the frequency, rate or extent of movement of RNA from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of RNA-nucleus import|regulation of RNA import into cell nucleus|regulation of RNA transport from cytoplasm to nucleus biological_process owl:Class GO:0050237 biolink:NamedThing pyridoxine 4-oxidase activity Catalysis of the reaction: pyridoxine + O2 = pyridoxal + H2O2. tmpzr1t_l9r_go_relaxed.owl pyridoxin 4-oxidase activity|pyridoxol 4-oxidase activity|pyridoxine:oxygen 4-oxidoreductase activity RHEA:15033|EC:1.1.3.12|MetaCyc:PYRIDOXINE-4-OXIDASE-RXN molecular_function owl:Class GO:0090727 biolink:NamedThing positive regulation of brood size Any process that increases brood size. Brood size is the number of progeny that survive embryogenesis and are cared for at one time. tmpzr1t_l9r_go_relaxed.owl tb 2016-12-19T15:07:32Z biological_process owl:Class GO:0060378 biolink:NamedThing regulation of brood size Any process that modulates brood size. Brood size is the number of progeny that survive embryogenesis and are cared for at one time. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902609 biolink:NamedThing (R)-2-hydroxy-alpha-linolenic acid biosynthetic process The chemical reactions and pathways resulting in the formation of (R)-2-hydroxy-alpha-linolenic acid. tmpzr1t_l9r_go_relaxed.owl (R)-2-hydroxy-alpha-linolenic acid formation|(R)-2-hydroxy-alpha-linolenic acid synthesis|2-hydroxy-octadecatrienoic acid biosynthesis|(R)-2-hydroxy-alpha-linolenic acid biosynthesis|(R)-2-hydroxy-alpha-linolenic acid anabolism tb 2014-01-08T01:14:03Z biological_process owl:Class GO:0042759 biolink:NamedThing long-chain fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of long-chain fatty acids, any fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acid biosynthesis|long-chain fatty acid synthesis|long-chain fatty acid anabolism|long-chain fatty acid formation biological_process owl:Class GO:0036025 biolink:NamedThing protein C inhibitor-TMPRSS11E complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and transmembrane protease serine 11E (TMPRSS11E); formation of the complex inhibits the serine protease activity of transmembrane protease serine 11E. tmpzr1t_l9r_go_relaxed.owl serpin A5-TMPRSS11E complex|PCI-TMPRSS11E complex|SERPINA5-TMPRSS11E complex|protein C inhibitor-transmembrane protease serine 11E complex|plasma serine protease inhibitor-TMPRSS11E complex bf 2011-10-19T01:29:08Z cellular_component owl:Class GO:1900775 biolink:NamedThing fumiquinazoline biosynthetic process The chemical reactions and pathways resulting in the formation of fumiquinazoline. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline synthesis|fumiquinazolines anabolism|fumiquinazolines formation|fumiquinazolines synthesis|fumiquinazolines biosynthesis|fumiquinazoline anabolism|fumiquinazoline biosynthesis|fumiquinazolines biosynthetic process|fumiquinazoline formation di 2012-06-04T09:29:54Z biological_process owl:Class GO:0033735 biolink:NamedThing aspartate dehydrogenase activity Catalysis of the reaction: L-aspartate + H2O + NAD(P)+ = oxaloacetate + NH3 + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl NADH2-dependent aspartate dehydrogenase activity|NADP+-dependent aspartate dehydrogenase activity|NAD-dependent aspartate dehydrogenase activity|L-aspartate:NAD(P)+ oxidoreductase (deaminating) activity EC:1.4.1.21|KEGG_REACTION:R07164|KEGG_REACTION:R07165|MetaCyc:1.4.1.21-RXN molecular_function owl:Class GO:0033393 biolink:NamedThing homogalacturonan catabolic process The chemical reactions and pathways resulting in the breakdown of homogalacturonan, a pectidic polymer, characterized by a backbone of 1,4-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. tmpzr1t_l9r_go_relaxed.owl homogalacturonan catabolism|homogalacturonan degradation|homogalacturonan breakdown MetaCyc:PWY-1081 biological_process owl:Class GO:0010674 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as part of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of meiosis by negative regulation of transcription from RNA polymerase II promoter|upregulation of meiosis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter, meiotic|positive regulation of meiosis by negative regulation of transcription from RNA polymerase II promoter|up regulation of meiosis by negative regulation of transcription from RNA polymerase II promoter|activation of meiosis by negative regulation of transcription from RNA polymerase II promoter|up-regulation of meiosis by negative regulation of transcription from RNA polymerase II promoter dgf 2012-05-01T08:39:58Z GO:1900475 biological_process owl:Class GO:0051038 biolink:NamedThing negative regulation of transcription involved in meiotic cell cycle Any process that stops, prevents, or reduces the frequency, rate or extent of transcription involved in the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of meiotic transcription|down-regulation of transcription during meiosis|down regulation of transcription during meiosis|downregulation of transcription during meiosis|inhibition of transcription during meiosis|negative regulation of transcription, meiotic|meiotic repression of transcription biological_process owl:Class GO:0017117 biolink:NamedThing single-stranded DNA-dependent ATP-dependent DNA helicase complex A protein complex that possesses single-stranded DNA-dependent DNA helicase activity. tmpzr1t_l9r_go_relaxed.owl ssDNA-dependent ATP-dependent DNA helicase complex cellular_component owl:Class GO:0010905 biolink:NamedThing negative regulation of UDP-glucose catabolic process Any process that decreases the rate, frequency or extent of UDP-glucose catabolism. UDP-glucose catabolic processes are the chemical reactions and pathways resulting in the breakdown of UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl negative regulation of UDP-glucose catabolism biological_process owl:Class GO:0047016 biolink:NamedThing cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity Catalysis of the reaction: NAD+ + 7-alpha-hydroxycholesterol = NADH + H+ + 7-alpha-hydroxycholest-4-en-3-one. tmpzr1t_l9r_go_relaxed.owl cholest-5-ene-3beta,7alpha-diol:NAD+ 3-oxidoreductase activity|3beta-hydroxy-delta5-C27-steroid oxidoreductase|cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase activity|3-beta-hydroxy-Delta(5)-C(27)-steroid oxidoreductase activity MetaCyc:1.1.1.181-RXN|RHEA:11896|EC:1.1.1.181 molecular_function owl:Class GO:0010652 biolink:NamedThing positive regulation of cell communication by chemical coupling Any process that increases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036098 biolink:NamedThing male germ-line stem cell population maintenance The process by which an organism or tissue maintains a population of male germ-line stem cells. tmpzr1t_l9r_go_relaxed.owl bf 2012-01-26T01:58:10Z biological_process owl:Class GO:0030718 biolink:NamedThing germ-line stem cell population maintenance Any process by which an organism or tissue maintains a population of germ-line stem cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045501 biolink:NamedThing regulation of sevenless signaling pathway Any process that modulates the frequency, rate or extent of the sevenless signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of sevenless signalling pathway|regulation of sev signaling pathway biological_process owl:Class GO:1901418 biolink:NamedThing positive regulation of response to ethanol Any process that activates or increases the frequency, rate or extent of response to ethanol. tmpzr1t_l9r_go_relaxed.owl activation of response to ethanol|up regulation of response to ethanol|up-regulation of response to ethanol|upregulation of response to ethanol tt 2012-10-01T16:49:51Z biological_process owl:Class GO:0071502 biolink:NamedThing cellular response to temperature stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to thermal stimulus mah 2009-12-18T02:56:45Z biological_process owl:Class GO:0016325 biolink:NamedThing oocyte microtubule cytoskeleton organization Formation and maintenance of a polarized microtubule array originating from a microtubule-organizing center (MTOC) in the oocyte. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte microtubule cytoskeleton organisation GO:0048130 biological_process owl:Class GO:0030951 biolink:NamedThing establishment or maintenance of microtubule cytoskeleton polarity Any cellular process that results in the specification, formation or maintenance of polarized microtubule-based cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072021 biolink:NamedThing ascending thin limb development The process whose specific outcome is the progression of an ascending thin limb over time, from its formation to the mature structure. The ascending thin limb is a segment of a nephron tubule lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:37:13Z biological_process owl:Class GO:0099070 biolink:NamedThing static microtubule bundle A microtubule bundle that has a constant length, and in which microtubule sliding does not take place. tmpzr1t_l9r_go_relaxed.owl Q-MT bundle|quiescent cell MT bundle|quiescent cell microtubule bundle In fission yeast, quiescent cells contain only static microtubule bundles. cellular_component owl:Class GO:0097427 biolink:NamedThing microtubule bundle An arrangement of closely apposed microtubules running parallel to each other. tmpzr1t_l9r_go_relaxed.owl microtubule fascicle NIF_Subcellular:sao1872343973 pr 2012-11-07T15:01:27Z cellular_component owl:Class GO:1905641 biolink:NamedThing cellular response to acetaldehyde Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetaldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2016-11-04T15:07:26Z biological_process owl:Class GO:0061255 biolink:NamedThing mesonephric glomerular parietal epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric glomerular parietal epithelial cell. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. These cells may also give rise to podocytes. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:33:52Z biological_process owl:Class GO:0102653 biolink:NamedThing gibberellin A51,2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A51 + 2-oxoglutarate + O2 <=> H+ + gibberellin A51-catabolite + succinate + carbon dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-172 molecular_function owl:Class GO:1900493 biolink:NamedThing positive regulation of [4Fe-4S] cluster assembly Any process that activates or increases the frequency, rate or extent of [4Fe-4S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of 4Fe-4S cluster assembly|activation of [4Fe-4S] cluster biosynthetic process|up-regulation of [4Fe-4S] cluster assembly|up regulation of [4Fe-4S] cluster assembly|upregulation of [4Fe-4S] cluster assembly|positive regulation of 4Fe-4S cluster assembly|up regulation of [4Fe-4S] cluster biosynthetic process|up-regulation of 4Fe-4S cluster assembly|positive regulation of [4Fe-4S] cluster biosynthetic process|activation of [4Fe-4S] cluster assembly|upregulation of 4Fe-4S cluster assembly|activation of 4Fe-4S cluster assembly|up-regulation of [4Fe-4S] cluster biosynthetic process|upregulation of [4Fe-4S] cluster biosynthetic process tt 2012-05-02T03:49:10Z biological_process owl:Class GO:0051661 biolink:NamedThing maintenance of centrosome location Any process in which a centrosome is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of centrosome localization biological_process owl:Class GO:0051642 biolink:NamedThing centrosome localization Any process in which a centrosome is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl centrosome localisation|establishment and maintenance of centrosome localization biological_process owl:Class GO:0048137 biolink:NamedThing spermatocyte division The meiotic divisions undergone by the primary and secondary spermatocytes to produce haploid spermatids. tmpzr1t_l9r_go_relaxed.owl spermatocyte cell division biological_process owl:Class GO:0031927 biolink:NamedThing pyridoxamine transmembrane transporter activity Enables the transfer of pyridoxamine from one side of a membrane to the other. Pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901646 biolink:NamedThing negative regulation of synoviocyte proliferation Any process that stops, prevents or reduces the frequency, rate or extent of synoviocyte proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of synoviocyte proliferation|downregulation of synoviocyte proliferation|down-regulation of synoviocyte proliferation|inhibition of synoviocyte proliferation hjd 2012-11-16T20:16:27Z biological_process owl:Class GO:1901645 biolink:NamedThing regulation of synoviocyte proliferation Any process that modulates the frequency, rate or extent of synoviocyte proliferation. tmpzr1t_l9r_go_relaxed.owl hjd 2012-11-16T20:16:23Z biological_process owl:Class GO:1900911 biolink:NamedThing regulation of olefin biosynthetic process Any process that modulates the frequency, rate or extent of olefin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of olefin anabolism|regulation of olefin formation|regulation of olefin biosynthesis|regulation of olefin synthesis tt 2012-06-13T04:20:08Z biological_process owl:Class GO:0062133 biolink:NamedThing negative regulation of L-glutamine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of L-glutamine biosynthesis. tmpzr1t_l9r_go_relaxed.owl dph 2019-06-27T13:47:21Z biological_process owl:Class GO:0045985 biolink:NamedThing positive regulation of pyrimidine nucleobase metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving pyrimidine nucleobases. tmpzr1t_l9r_go_relaxed.owl activation of pyrimidine base metabolic process|upregulation of pyrimidine base metabolic process|positive regulation of pyrimidine base metabolic process|positive regulation of pyrimidine base metabolism|stimulation of pyrimidine base metabolic process|up regulation of pyrimidine base metabolic process|up-regulation of pyrimidine base metabolic process biological_process owl:Class GO:0045906 biolink:NamedThing negative regulation of vasoconstriction Any process that stops, prevents, or reduces the frequency, rate or extent of vasoconstriction. tmpzr1t_l9r_go_relaxed.owl downregulation of vasoconstriction|inhibition of vasoconstriction|down-regulation of vasoconstriction|down regulation of vasoconstriction biological_process owl:Class GO:0036155 biolink:NamedThing acylglycerol acyl-chain remodeling Remodeling the acyl chains of an acylglycerol, through sequential deacylation and re-acylation reactions, to generate an acylglycerol containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl glyceride acyl-chain remodeling bf 2012-03-14T02:55:00Z biological_process owl:Class GO:0006639 biolink:NamedThing acylglycerol metabolic process The chemical reactions and pathways involving acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. tmpzr1t_l9r_go_relaxed.owl glyceride metabolic process|acylglycerol metabolism|glyceride metabolism biological_process owl:Class GO:0043267 biolink:NamedThing negative regulation of potassium ion transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl inhibition of potassium ion transport|negative regulation of potassium transport|transmembrane conductance regulator activity|negative regulation of K+ transport|down-regulation of potassium ion transport|negative regulation of potassium ion conductance|down regulation of potassium ion transport|regulation of potassium conductance|regulation of K+ conductance|downregulation of potassium ion transport biological_process owl:Class GO:0102060 biolink:NamedThing endo-alpha-bergamotene synthase activity Catalysis of the reaction: 2-cis,6-cis-farnesyl diphosphate <=> (-)-endo-alpha-bergamotene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl endo-alpha-bergamontene synthase activity RHEA:30471|MetaCyc:RXN-10482|EC:4.2.3.54 molecular_function owl:Class GO:0061017 biolink:NamedThing hepatoblast differentiation The process in which a relatively unspecialized cell acquires specialized features of a hepatoblast. A hepatoblast is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into hepatocytes and cholangiocytes. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-02T09:08:03Z biological_process owl:Class GO:1903136 biolink:NamedThing cuprous ion binding Binding to a cuprous ion, copper(1+). tmpzr1t_l9r_go_relaxed.owl Cu(+) binding|Cu(I) binding|copper(1+) binding bf 2014-06-26T14:38:23Z molecular_function owl:Class GO:0018221 biolink:NamedThing peptidyl-serine palmitoylation The covalent attachment of a palmitoyl group to an oxygen (O) atom in a serine residue to form peptidyl-O-palmitoyl-L-serine. tmpzr1t_l9r_go_relaxed.owl peptidyl-serine O-palmitoylation RESID:AA0080 Palmitoylation of a non-terminal serine residue always occurs on an oxygen (O) atom. biological_process owl:Class GO:0018345 biolink:NamedThing protein palmitoylation The covalent attachment of a palmitoyl group to a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid palmitoylation GO:0018318|GO:0018349 biological_process owl:Class GO:0005010 biolink:NamedThing insulin-like growth factor-activated receptor activity Combining with insulin-like growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl insulin-like growth factor receptor activity|IGF receptor activity|IGF-activated receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand IGF. For receptors that bind other growth factors, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:2000412 biolink:NamedThing positive regulation of thymocyte migration Any process that activates or increases the frequency, rate or extent of thymocyte migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of immature T-cell migration|positive regulation of thymic lymphocyte migration|positive regulation of immature T cell migration|positive regulation of immature T lymphocyte migration|positive regulation of immature T-lymphocyte migration mah 2011-02-23T01:34:23Z biological_process owl:Class GO:0072339 biolink:NamedThing cellular lactam biosynthetic process The chemical reactions and pathways resulting in the formation of lactams, any cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. tmpzr1t_l9r_go_relaxed.owl cellular lactam formation|cellular lactam biosynthesis|cellular lactam synthesis|cellular lactam anabolism mah 2010-11-04T04:33:01Z biological_process owl:Class GO:1901840 biolink:NamedThing negative regulation of RNA polymerase I regulatory region sequence-specific DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase I regulatory region sequence-specific DNA binding. tmpzr1t_l9r_go_relaxed.owl inhibition of RNA polymerase I regulatory region sequence-specific DNA binding|downregulation of RNA polymerase I regulatory region sequence-specific DNA binding|down regulation of RNA polymerase I regulatory region sequence-specific DNA binding|down-regulation of RNA polymerase I regulatory region sequence-specific DNA binding sart 2013-01-23T10:24:37Z biological_process owl:Class GO:0048872 biolink:NamedThing homeostasis of number of cells Any biological process involved in the maintenance of the steady-state number of cells within a population of cells. tmpzr1t_l9r_go_relaxed.owl cell population homeostasis|homeostasis of cell number biological_process owl:Class GO:0006246 biolink:NamedThing dTDP catabolic process The chemical reactions and pathways resulting in the breakdown of dTDP, deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP catabolism|dTDP degradation|dTDP breakdown biological_process owl:Class GO:0010268 biolink:NamedThing brassinosteroid homeostasis Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055088 biolink:NamedThing lipid homeostasis Any process involved in the maintenance of an internal steady state of lipid within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060857 biolink:NamedThing establishment of glial blood-brain barrier Establishment of the glial barrier between the blood and the brain. The glial cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl establishment of glial BBB|establishment of glial blood/brain barrier dph 2009-08-12T12:17:51Z biological_process owl:Class GO:0090012 biolink:NamedThing negative regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation Any process that stops, prevents, or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway that contributes to the formation of the primitive streak. tmpzr1t_l9r_go_relaxed.owl negative regulation of transforming growth factor beta receptor signalling pathway involved in primitive streak formation tb 2009-07-29T10:51:57Z biological_process owl:Class GO:0062095 biolink:NamedThing endoplasmic reticulum-peroxisome tethering The attachment of an endoplasmic reticulum membrane to a peroxisome via molecular tethers that physically bridge the two membranes and attach them to each other. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-21T13:28:50Z biological_process owl:Class GO:0060151 biolink:NamedThing peroxisome localization Any process in which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. tmpzr1t_l9r_go_relaxed.owl peroxisome localisation biological_process owl:Class GO:0008616 biolink:NamedThing queuosine biosynthetic process The chemical reactions and pathways resulting in the formation of queuosines, a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents. tmpzr1t_l9r_go_relaxed.owl queuosine formation|queuosine synthesis|queuosine anabolism|queuosine biosynthesis biological_process owl:Class GO:0050779 biolink:NamedThing RNA destabilization Any process that decreases the stability of an RNA molecule, making it more vulnerable to degradative processes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021979 biolink:NamedThing hypothalamus cell differentiation The differentiation of cells that will contribute to the structure and function of the hypothalamus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032276 biolink:NamedThing regulation of gonadotropin secretion Any process that modulates the frequency, rate or extent of the regulated release of a gonadotropin. tmpzr1t_l9r_go_relaxed.owl regulation of gonadotrophin secretion biological_process owl:Class GO:0070474 biolink:NamedThing positive regulation of uterine smooth muscle contraction Any process that increases the frequency, rate or extent of uterine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of myometrial contraction|positive regulation of myometrial smooth muscle contraction|positive regulation of myometrium contraction|activation of uterine smooth muscle contraction|upregulation of uterine smooth muscle contraction|up-regulation of uterine smooth muscle contraction|stimulation of uterine smooth muscle contraction|up regulation of uterine smooth muscle contraction biological_process owl:Class GO:0070472 biolink:NamedThing regulation of uterine smooth muscle contraction Any process that modulates the frequency, rate or extent of uterine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl regulation of myometrial contraction|regulation of myometrium contraction|regulation of myometrial smooth muscle contraction biological_process owl:Class GO:2000162 biolink:NamedThing negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in cardiac right atrium morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:05:24Z biological_process owl:Class GO:0060162 biolink:NamedThing negative regulation of phospholipase C-activating dopamine receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the dopamine receptor, phospholipase C activating pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of phospholipase C-activating dopamine receptor signalling pathway|negative regulation of dopamine receptor, phospholipase C activating pathway biological_process owl:Class GO:1900737 biolink:NamedThing negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|negative regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|downregulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inhibition of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|down-regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|inhibition of PLC-activating GPCR signaling pathway|negative regulation of phospholipase C-activating dopamine receptor signaling pathway|negative regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|negative regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|down regulation of phospholipase C-activating dopamine receptor signaling pathway|inhibition of phospholipase C-activating G-protein coupled receptor signaling pathway|down regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|downregulation of phospholipase C-activating G-protein coupled receptor signaling pathway|down regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|inhibition of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|down regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|negative regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|downregulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|down-regulation of PLC-activating GPCR signaling pathway|down regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|down regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|negative regulation of PLC-activating GPCR signaling pathway|inhibition of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|inhibition of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|down-regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|down-regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|down-regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|downregulation of phospholipase C-activating dopamine receptor signaling pathway|downregulation of PLC-activating GPCR signaling pathway|down regulation of PLC-activating GPCR signaling pathway|down regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|down regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|negative regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|downregulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|inhibition of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|down-regulation of phospholipase C-activating dopamine receptor signaling pathway|inhibition of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|down-regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|down-regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|down-regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|downregulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|downregulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|negative regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|inhibition of phospholipase C-activating dopamine receptor signaling pathway|negative regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating) rl 2012-05-28T10:07:48Z biological_process owl:Class GO:0015685 biolink:NamedThing ferric-enterobactin import into cell A process in which ferric-enterobactin, the iron-bound form of the siderophore enterobactin, is transported into the cell by specific cell surface receptors. tmpzr1t_l9r_go_relaxed.owl ferric-enterobactin transport biological_process owl:Class GO:1901678 biolink:NamedThing iron coordination entity transport The directed movement of an iron coordination entity into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-22T15:43:15Z biological_process owl:Class GO:0072573 biolink:NamedThing tolerance induction to lipopolysaccharide Tolerance induction directed at lipopolysaccharide antigens. tmpzr1t_l9r_go_relaxed.owl tolerance induction to endotoxin|tolerance induction to LPS mah 2011-02-02T03:05:19Z biological_process owl:Class GO:0090226 biolink:NamedThing regulation of microtubule nucleation by Ran protein signal transduction Any series of molecular signals in which a Ran GTPase relays one or more of the signals resulting in the modulation of the rate, frequency or extent of microtubule nucleation. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-13T11:35:31Z biological_process owl:Class GO:0034959 biolink:NamedThing endothelin maturation The process leading to the attainment of the full functional capacity of endothelin by conversion of Big-endothelin substrate into mature endothelin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15384 biological_process owl:Class GO:0070087 biolink:NamedThing chromo shadow domain binding Binding to a chromo shadow domain, a protein domain that is distantly related, and found in association with, the chromo domain. tmpzr1t_l9r_go_relaxed.owl chromoshadow domain binding molecular_function owl:Class GO:1900440 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to neutral pH Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to neutral pH. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:55:48Z biological_process owl:Class GO:0060548 biolink:NamedThing negative regulation of cell death Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T01:56:10Z biological_process owl:Class GO:0006499 biolink:NamedThing N-terminal protein myristoylation The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006498 biolink:NamedThing N-terminal protein lipidation The covalent attachment of a lipid group to the amino terminus of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008362 biolink:NamedThing chitin-based embryonic cuticle biosynthetic process Synthesis, including the chemical reactions and pathways resulting in the formation of chitin and other components, and deposition of a chitin-based embryonic cuticle by the underlying epidermal epithelium. This tough, waterproof cuticle layer is essential to provide structural integrity of the larval body. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl embryonic cuticle biosynthetic process|embryonic cuticle formation|embryonic cuticle synthesis|embryonic cuticle anabolism biological_process owl:Class GO:0040003 biolink:NamedThing chitin-based cuticle development Synthesis and deposition of a chitin-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl chitin-based cuticle anabolism|chitin-based cuticle synthesis|chitin-based cuticle formation|chitin-based cuticle biosynthetic process biological_process owl:Class GO:0004835 biolink:NamedThing tubulin-tyrosine ligase activity Catalysis of the reaction: ATP + detyrosinated alpha-tubulin + L-tyrosine = alpha-tubulin + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl TTL activity|alpha-tubulin:L-tyrosine ligase (ADP-forming)|tubulinyl-tyrosine ligase activity RHEA:17605|MetaCyc:6.3.2.25-RXN|EC:6.3.2.25|Reactome:R-HSA-8955706 molecular_function owl:Class GO:0042855 biolink:NamedThing eugenol biosynthetic process The chemical reactions and pathways resulting in the formation of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil. tmpzr1t_l9r_go_relaxed.owl 4-allyl-2-methoxyphenol biosynthesis|eugenol anabolism|4-allyl-2-methoxyphenol biosynthetic process|eugenol biosynthesis|eugenol formation|eugenol synthesis|eugenic acid biosynthetic process|eugenic acid biosynthesis biological_process owl:Class GO:0006624 biolink:NamedThing vacuolar protein processing Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. tmpzr1t_l9r_go_relaxed.owl vacuolar proteolysis|vacuolar protein maturation biological_process owl:Class GO:0034653 biolink:NamedThing retinoic acid catabolic process The chemical reactions and pathways resulting in the breakdown of retinoic acid, one of the three components that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl retinoic acid catabolism|retinoic acid degradation|vitamin A1 acid catabolic process|retinoic acid breakdown biological_process owl:Class GO:0106161 biolink:NamedThing positive regulation of small RNA loading onto RISC Any process that activates or increases the frequency, rate or extent of small RNA loading onto RISC. tmpzr1t_l9r_go_relaxed.owl hjd 2018-11-30T15:45:53Z biological_process owl:Class GO:0106159 biolink:NamedThing regulation of small RNA loading onto RISC Any process that modulates the frequency, rate or extent small RNA loading onto RISC. tmpzr1t_l9r_go_relaxed.owl hjd 2018-11-30T15:38:50Z biological_process owl:Class GO:0017009 biolink:NamedThing protein-phycocyanobilin linkage The linkage of the chromophore phycocyanobilin to phycocyanin or allophycocyanin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0131 biological_process owl:Class GO:2000571 biolink:NamedThing regulation of interleukin-4-dependent isotype switching to IgE isotypes Any process that modulates the frequency, rate or extent of interleukin-4-dependent isotype switching to IgE isotypes. tmpzr1t_l9r_go_relaxed.owl regulation of IL-4-dependent isotype switching to IgE isotypes ebc 2011-04-03T09:20:11Z biological_process owl:Class GO:0034130 biolink:NamedThing toll-like receptor 1 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 1. tmpzr1t_l9r_go_relaxed.owl TLR1 signaling pathway|toll-like receptor 1 signalling pathway biological_process owl:Class GO:0097104 biolink:NamedThing postsynaptic membrane assembly The aggregation, arrangement and bonding together of a set of components to form a postsynaptic membrane, a specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). tmpzr1t_l9r_go_relaxed.owl post-synaptic membrane assembly pr 2011-07-27T01:26:49Z biological_process owl:Class GO:0071737 biolink:NamedThing IgG B cell receptor complex An IgG immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl surface IgG2b|membrane-bound IgG2c|membrane-bound IgG1|membrane-bound IgG4|surface IgG2c|surface IgG2a|surface IgG|surface IgG1|membrane-bound IgG2|membrane-bound IgG2b|surface IgG2|membrane-bound IgG|membrane-bound IgG2a|surface IgG3|membrane-bound IgG3|surface IgG4 Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0019815 biolink:NamedThing B cell receptor complex An immunoglobulin complex that is present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl B lymphocyte receptor complex|immunoglobulin complex, membrane bound|B-cell receptor complex|antibody|B cell receptor accessory molecule complex|B-lymphocyte receptor complex|BCR complex Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. GO:0042570 cellular_component owl:Class GO:1901261 biolink:NamedThing regulation of sorocarp spore cell differentiation Any process that modulates the frequency, rate or extent of sorocarp spore cell differentiation. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-15T09:44:30Z biological_process owl:Class GO:0030948 biolink:NamedThing negative regulation of vascular endothelial growth factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of vascular endothelial growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular endothelial growth factor receptor signalling pathway|negative regulation of VEGF receptor signaling pathway|down-regulation of vascular endothelial growth factor receptor signaling pathway|downregulation of vascular endothelial growth factor receptor signaling pathway|down regulation of vascular endothelial growth factor receptor signaling pathway|negative regulation of VEGF receptor signalling pathway|inhibition of vascular endothelial growth factor receptor signaling pathway biological_process owl:Class GO:0018894 biolink:NamedThing dibenzo-p-dioxin metabolic process The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern. tmpzr1t_l9r_go_relaxed.owl phenodioxin metabolism|oxanthrene metabolic process|dibenzo-p-dioxin metabolism|oxanthrene metabolism|phenodioxin metabolic process UM-BBD_pathwayID:dpd biological_process owl:Class GO:0045760 biolink:NamedThing positive regulation of action potential Any process that activates or increases the frequency, rate or extent of action potential creation, propagation or termination. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl activation of action potential|up regulation of action potential|stimulation of action potential|upregulation of action potential|up-regulation of action potential biological_process owl:Class GO:0047557 biolink:NamedThing 3-aci-nitropropanoate oxidase activity Catalysis of the reaction: 3-aci-nitropropanoate + H(2)O + O(2) = 3-oxopropanoate + H(2)O(2) + nitrite. tmpzr1t_l9r_go_relaxed.owl 3-aci-nitropropanoate:oxygen oxidoreductase activity|propionate-3-nitronate oxidase activity EC:1.7.3.5|KEGG_REACTION:R01609|RHEA:22372|MetaCyc:3-ACI-NITROPROPANOATE-OXIDASE-RXN molecular_function owl:Class GO:0016663 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl EC:1.7.3.- molecular_function owl:Class GO:0062192 biolink:NamedThing L-rhamnose mutarotase activity Catalysis of the reaction: alpha-L-rhamnose = beta-L-rhamnose. tmpzr1t_l9r_go_relaxed.owl RHEA:25584|EC:5.1.3.32 dph 2019-12-09T16:45:45Z molecular_function owl:Class GO:0004319 biolink:NamedThing enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity Catalysis of the reaction: acyl-[acyl-carrier protein] + NADP+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl acyl-acyl-carrier-protein:NADP+ oxidoreductase (B-specific)|enoyl acyl-carrier-protein reductase activity|enoyl-[acyl-carrier protein] reductase (NADPH, B-specific) activity|enoyl-ACP reductase (NADPH, B-specific) activity|enoyl-acyl-carrier-protein reductase (NADPH2, B-specific)|enoyl-acyl-carrier-protein reductase (NADPH, B-specific)|NADPH 2-enoyl Co A reductase activity|reductase, enoyl-acyl carrier protein (reduced nicotinamide adenine dinucleotide phosphate) MetaCyc:ENOYL-ACP-REDUCT-NADPH-RXN|EC:1.3.1.10 molecular_function owl:Class GO:0045605 biolink:NamedThing negative regulation of epidermal cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of hypodermal cell differentiation|inhibition of epidermal cell differentiation|downregulation of epidermal cell differentiation|down-regulation of epidermal cell differentiation|down regulation of epidermal cell differentiation biological_process owl:Class GO:0060636 biolink:NamedThing negative regulation of (1->3)-beta-D-glucan biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl negative regulation of 1,3-beta-D-glucan biosynthetic process dph 2009-05-18T03:24:02Z biological_process owl:Class GO:0043771 biolink:NamedThing cytidine kinase activity Catalysis of the reaction: ATP + cytidine = ADP + CMP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071386 biolink:NamedThing cellular response to corticosterone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:57:44Z biological_process owl:Class GO:1901716 biolink:NamedThing negative regulation of gamma-aminobutyric acid catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of gamma-aminobutyric acid catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of GABA catabolism|down-regulation of gamma-aminobutyric acid breakdown|negative regulation of 4-aminobutanoate catabolism|negative regulation of GABA catabolic process|downregulation of gamma-aminobutyric acid catabolism|down-regulation of 4-aminobutanoate catabolism|inhibition of GABA catabolism|down regulation of 4-aminobutanoate catabolism|down-regulation of 4-aminobutanoate catabolic process|inhibition of gamma-aminobutyric acid catabolism|negative regulation of GABA catabolism|inhibition of gamma-aminobutyric acid degradation|negative regulation of gamma-aminobutyric acid degradation|down regulation of GABA catabolism|down-regulation of gamma-aminobutyric acid catabolism|down regulation of gamma-aminobutyric acid breakdown|negative regulation of gamma-aminobutyric acid catabolism|inhibition of 4-aminobutanoate catabolism|inhibition of gamma-aminobutyric acid breakdown|inhibition of 4-aminobutanoate catabolic process|downregulation of GABA catabolic process|down regulation of GABA catabolic process|inhibition of GABA catabolic process|inhibition of 4-aminobutyrate catabolism|down-regulation of GABA catabolism|downregulation of gamma-aminobutyric acid breakdown|down regulation of gamma-aminobutyric acid catabolism|downregulation of gamma-aminobutyric acid degradation|downregulation of gamma-aminobutyric acid catabolic process|down-regulation of GABA catabolic process|inhibition of gamma-aminobutyric acid catabolic process|down regulation of gamma-aminobutyric acid catabolic process|inhibition of 4-aminobutyrate catabolic process|downregulation of 4-aminobutyrate catabolic process|down regulation of 4-aminobutyrate catabolic process|down-regulation of 4-aminobutyrate catabolic process|down regulation of 4-aminobutyrate catabolism|down-regulation of gamma-aminobutyric acid catabolic process|negative regulation of gamma-aminobutyric acid breakdown|down-regulation of gamma-aminobutyric acid degradation|downregulation of 4-aminobutanoate catabolism|down regulation of gamma-aminobutyric acid degradation|downregulation of 4-aminobutanoate catabolic process|negative regulation of 4-aminobutanoate catabolic process|down regulation of 4-aminobutanoate catabolic process|negative regulation of 4-aminobutyrate catabolic process|down-regulation of 4-aminobutyrate catabolism|downregulation of 4-aminobutyrate catabolism|negative regulation of 4-aminobutyrate catabolism mcc 2012-12-19T16:13:31Z biological_process owl:Class GO:0051387 biolink:NamedThing negative regulation of neurotrophin TRK receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the neurotrophin TRK receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of nerve growth factor receptor signaling pathway|downregulation of nerve growth factor receptor signaling pathway|negative regulation of NGF receptor signalling pathway|negative regulation of nerve growth factor receptor signaling pathway|down regulation of nerve growth factor receptor signaling pathway|down-regulation of nerve growth factor receptor signaling pathway|negative regulation of NGF receptor signaling pathway|negative regulation of nerve growth factor receptor signalling pathway biological_process owl:Class GO:0051386 biolink:NamedThing regulation of neurotrophin TRK receptor signaling pathway Any process that modulates the frequency, rate or extent of the neurotrophin TRK receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of nerve growth factor receptor signalling pathway|regulation of NGF receptor signalling pathway|regulation of nerve growth factor receptor signaling pathway|regulation of NGF receptor signaling pathway biological_process owl:Class GO:1902510 biolink:NamedThing regulation of apoptotic DNA fragmentation Any process that modulates the frequency, rate or extent of apoptotic DNA fragmentation. tmpzr1t_l9r_go_relaxed.owl regulation of DNA fragmentation involved in apoptotic nuclear change|regulation of chromatinolysis|regulation of DNA catabolism during apoptosis|regulation of DNA fragmentation|regulation of DNA catabolic process during apoptosis|regulation of endonucleolytic DNA catabolic process involved in apoptosis DNA fragmentation in response to apoptotic signals is achieved through the activity of apoptotic nucleases (see GO:0006309 'apoptotic DNA fragmentation'). Gene products involved in compartmentalization of such nucleases and in activation or repression of their enzymatic activity should be annotated to the regulation term GO:1902510 'regulation of apoptotic DNA fragmentation' or to one of its children (see PMID:15723341). hjd 2013-11-15T18:28:32Z biological_process owl:Class GO:1903624 biolink:NamedThing regulation of DNA catabolic process Any process that modulates the frequency, rate or extent of DNA catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of DNA catabolism|regulation of DNA degradation|regulation of DNA breakdown sl 2014-11-19T22:36:35Z biological_process owl:Class GO:0010104 biolink:NamedThing regulation of ethylene-activated signaling pathway Any process that modulates the frequency, rate or extent of ethylene (ethene) signal transduction. tmpzr1t_l9r_go_relaxed.owl regulation of ethylene mediated signaling pathway|regulation of ethene mediated signalling pathway|regulation of ethene mediated signaling pathway|regulation of ethylene mediated signalling pathway biological_process owl:Class GO:0070297 biolink:NamedThing regulation of phosphorelay signal transduction system Any process that modulates the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system. tmpzr1t_l9r_go_relaxed.owl regulation of two-component signal transduction system|regulation of histidyl-aspartyl phosphorelay|regulation of two-component signal transduction system (phosphorelay) biological_process owl:Class GO:0060949 biolink:NamedThing cardiac vascular smooth muscle cell fate commitment The commitment of cells to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell. tmpzr1t_l9r_go_relaxed.owl heart vascular smooth muscle cell fate commitment dph 2009-09-29T03:02:45Z biological_process owl:Class GO:0097081 biolink:NamedThing vascular associated smooth muscle cell fate commitment The commitment of cells to a vascular smooth muscle cell fate and their capacity to differentiate into vascular smooth muscle cells. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell fate commitment pr 2011-06-20T03:51:52Z biological_process owl:Class GO:0070339 biolink:NamedThing response to bacterial lipopeptide Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042723 biolink:NamedThing thiamine-containing compound metabolic process The chemical reactions and pathways involving thiamine (vitamin B1), and compounds derived from it. tmpzr1t_l9r_go_relaxed.owl thiamine and derivative metabolic process|thiamine-containing compound metabolism|thiamin and derivative metabolic process|thiamin and derivative metabolism|vitamin B1 and derivative metabolism|thiamin-containing compound metabolic process|vitamin B1 and derivative metabolic process|thiamine and derivative metabolism biological_process owl:Class GO:0046284 biolink:NamedThing anthocyanin-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins. tmpzr1t_l9r_go_relaxed.owl anthocyanin catabolic process|anthocyanin breakdown|anthocyanin degradation|anthocyanin catabolism biological_process owl:Class GO:0046283 biolink:NamedThing anthocyanin-containing compound metabolic process The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers. tmpzr1t_l9r_go_relaxed.owl anthocyanin metabolism|anthocyanin metabolic process biological_process owl:Class GO:0071214 biolink:NamedThing cellular response to abiotic stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to abiotic stress Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. mah 2009-12-03T01:02:11Z biological_process owl:Class GO:0042121 biolink:NamedThing alginic acid biosynthetic process The chemical reactions and pathways resulting in the formation of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds). tmpzr1t_l9r_go_relaxed.owl alginate biosynthetic process|alginic acid anabolism|alginate biosynthesis|alginic acid biosynthesis|alginic acid formation|alginic acid synthesis biological_process owl:Class GO:0044759 biolink:NamedThing negative regulation by symbiont of host synaptic transmission Any process in which a symbiont organism decreases the frequency, rate or extent of synaptic transmission, communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse, in its host organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-12-06T15:37:25Z biological_process owl:Class GO:1905309 biolink:NamedThing positive regulation of cohesin loading Any process that activates or increases the frequency, rate or extent of cohesin loading. tmpzr1t_l9r_go_relaxed.owl positive regulation of cohesin localization to chromatin|positive regulation of cohesin association with chromatin vw 2016-07-08T16:12:18Z biological_process owl:Class GO:0051983 biolink:NamedThing regulation of chromosome segregation Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043600 biolink:NamedThing cytoplasmic replisome A multi-component enzymatic machine at the cytoplasmic replication fork, which mediates DNA replication. Includes DNA primase, DNA polymerase, DNA helicase, and other proteins. tmpzr1t_l9r_go_relaxed.owl prokaryotic replisome cellular_component owl:Class GO:0002850 biolink:NamedThing negative regulation of peripheral T cell tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of peripheral T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl inhibition of peripheral T cell tolerance induction|down-regulation of peripheral T cell tolerance induction|downregulation of peripheral T cell tolerance induction|down regulation of peripheral T cell tolerance induction biological_process owl:Class GO:0002665 biolink:NamedThing negative regulation of T cell tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl down regulation of T cell tolerance induction|negative regulation of T-lymphocyte tolerance induction|inhibition of T cell tolerance induction|negative regulation of T-cell tolerance induction|negative regulation of T lymphocyte tolerance induction|downregulation of T cell tolerance induction|down-regulation of T cell tolerance induction biological_process owl:Class GO:1902781 biolink:NamedThing cellular response to nonane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T03:25:32Z biological_process owl:Class GO:1902779 biolink:NamedThing cellular response to alkane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T03:18:04Z biological_process owl:Class GO:0010029 biolink:NamedThing regulation of seed germination Any process that modulates the frequency, rate or extent of seed germination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050448 biolink:NamedThing beta-cyclopiazonate dehydrogenase activity Catalysis of the reaction: beta-cyclopiazonate + A = alpha-cyclopiazonate + AH(2). tmpzr1t_l9r_go_relaxed.owl b-cyclopiazonate dehydrogenase activity|beta-cyclopiazonate oxidocyclase activity|beta-cyclopiazonate:(acceptor) oxidoreductase (cyclizing)|beta-cyclopiazonate:acceptor oxidoreductase (cyclizing)|beta-cyclopiazonic oxidocyclase activity MetaCyc:BETA-CYCLOPIAZONATE-DEHYDROGENASE-RXN|KEGG_REACTION:R04080|RHEA:14525|EC:1.21.99.1 molecular_function owl:Class GO:1904555 biolink:NamedThing L-proline transmembrane transport The directed movement of L-proline across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2015-08-14T14:21:06Z biological_process owl:Class GO:0042546 biolink:NamedThing cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl cell wall assembly biological_process owl:Class GO:0047746 biolink:NamedThing chlorophyllase activity Catalysis of the reaction: chlorophyll + H2O = phytol + chlorophyllide. tmpzr1t_l9r_go_relaxed.owl chlorophyll chlorophyllidohydrolase activity EC:3.1.1.14|MetaCyc:CHLOROPHYLLASE-RXN molecular_function owl:Class GO:0033573 biolink:NamedThing high-affinity iron permease complex A protein complex composed of a multicopper ferroxidase that oxidizes Fe(II) to Fe(III), and a ferric iron permease that transports the produced Fe(III) into the cell. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity iron permease complex cellular_component owl:Class GO:0018844 biolink:NamedThing 2-hydroxytetrahydrofuran isomerase activity Catalysis of the reaction: 2-hydroxytetrahydrofuran = 4-hydroxybutyraldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0019|EC:5.3.99.- molecular_function owl:Class GO:0051734 biolink:NamedThing polynucleotide kinase activity Catalysis of the reaction: ATP + 5'-dephosphopolynucleotide = ADP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA. tmpzr1t_l9r_go_relaxed.owl ATP-dependent polynucleotide kinase activity|ATP-dependent polynucleotide 5'-hydroxyl-kinase activity|ATP:5'-dephosphopolynucleotide 5'-phosphotransferase activity|ATP:5'-dephosphopolynucleotide 5'-phosphatase activity https://github.com/geneontology/go-ontology/issues/21619 EC:2.7.1.78|RHEA:54580 molecular_function owl:Class GO:1900607 biolink:NamedThing tensidol B catabolic process The chemical reactions and pathways resulting in the breakdown of tensidol B. tmpzr1t_l9r_go_relaxed.owl tensidol B breakdown|tensidol B degradation|tensidol B catabolism di 2012-05-15T06:58:43Z biological_process owl:Class GO:0042722 biolink:NamedThing alpha-beta T cell activation by superantigen The change in morphology and behavior of alpha-beta T cells resulting from exposure to a superantigen, a microbial antigen with an extremely potent activating effect on T cells that bear a specific variable region. tmpzr1t_l9r_go_relaxed.owl alpha-beta T lymphocyte activation by superantigen|alpha-beta T-lymphocyte activation by superantigen|alpha-beta T-cell activation by superantigen biological_process owl:Class GO:0046631 biolink:NamedThing alpha-beta T cell activation The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-cell activation|alpha-beta T-lymphocyte activation|alpha-beta T lymphocyte activation biological_process owl:Class GO:0005713 biolink:NamedThing recombination nodule An electron dense structure that is associated with meiotic chromosomes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016339 biolink:NamedThing calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl calcium-dependent cell adhesion molecule activity biological_process owl:Class GO:0097641 biolink:NamedThing alpha-ketoglutarate-dependent xanthine dioxygenase activity Catalysis of the reaction: 2-oxoglutarate (alpha-ketoglutarate) + O2 + xanthine = CO2 + succinate + urate. tmpzr1t_l9r_go_relaxed.owl alpha-ketoglutarate- and Fe(II)-dependent xanthine hydroxylase activity|2-oxoglutarate-dependent xanthine dioxygenase activity|alpha-ketoglutarate- and Fe(II)-dependent xanthine dioxygenase activity RHEA:43120 pr 2014-09-03T14:55:42Z molecular_function owl:Class GO:0071309 biolink:NamedThing cellular response to phylloquinone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phylloquinone (vitamin K1) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to vitamin K1 mah 2009-12-10T04:37:18Z biological_process owl:Class GO:0032573 biolink:NamedThing response to phylloquinone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phylloquinone (vitamin K1) stimulus. tmpzr1t_l9r_go_relaxed.owl response to vitamin K1 biological_process owl:Class GO:0106089 biolink:NamedThing negative regulation of cell adhesion involved in sprouting angiogenesis Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-22T18:28:08Z biological_process owl:Class GO:0008776 biolink:NamedThing acetate kinase activity Catalysis of the reaction: ATP + acetate = ADP + acetyl phosphate. tmpzr1t_l9r_go_relaxed.owl acetokinase activity|AK activity|acetate kinase (phosphorylating) activity|ATP:acetate phosphotransferase activity|acetic kinase activity|AckA EC:2.7.2.1|MetaCyc:ACETATEKIN-RXN|RHEA:11352 molecular_function owl:Class GO:0046267 biolink:NamedThing triethanolamine catabolic process The chemical reactions and pathways resulting in the breakdown of triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent. tmpzr1t_l9r_go_relaxed.owl triethanolamine catabolism|triethanolamine breakdown|triethanolamine degradation biological_process owl:Class GO:0035293 biolink:NamedThing chitin-based larval cuticle pattern formation The process that gives rise to the patterns of cell differentiation in the chitin-based larval cuticle. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099506 biolink:NamedThing synaptic vesicle transport along actin filament The directed movement of synaptic vesicles along actin filaments within a cell, powered by molecular motors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030050 biolink:NamedThing vesicle transport along actin filament Movement of a vesicle along an actin filament, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008622 biolink:NamedThing epsilon DNA polymerase complex A heterotetrameric DNA polymerase complex that catalyzes processive DNA synthesis in the absence of PCNA, but is further stimulated in the presence of PCNA. The complex contains a large catalytic subunit and three small subunits, and is best characterized in Saccharomyces, in which the subunits are named Pol2p, Dpb2p, Dpb3p, and Dpb4p. Some evidence suggests that DNA polymerase epsilon is the leading strand polymerase; it is also involved in nucleotide-excision repair and mismatch repair. tmpzr1t_l9r_go_relaxed.owl DNA polymerase epsilon complex cellular_component owl:Class GO:0031429 biolink:NamedThing box H/ACA snoRNP complex A box H/ACA RNP complex that is located in the nucleolus. tmpzr1t_l9r_go_relaxed.owl box H/ACA small nucleolar ribonucleoprotein complex|box H/ACA snoRNP pseudouridylase complex cellular_component owl:Class GO:1904597 biolink:NamedThing negative regulation of connective tissue replacement involved in inflammatory response wound healing Any process that stops, prevents or reduces the frequency, rate or extent of connective tissue replacement involved in inflammatory response wound healing. tmpzr1t_l9r_go_relaxed.owl down-regulation of connective tissue replacement involved in inflammatory response wound healing|inhibition of fibrosis during inflammatory response|downregulation of connective tissue replacement during inflammatory response|negative regulation of connective tissue replacement during inflammatory response|down regulation of connective tissue replacement during inflammatory response|negative regulation of fibrosis during inflammatory response|down-regulation of connective tissue replacement during inflammatory response|down regulation of fibrosis during inflammatory response|down regulation of connective tissue replacement involved in inflammatory response wound healing|downregulation of fibrosis during inflammatory response|downregulation of connective tissue replacement involved in inflammatory response wound healing|down-regulation of fibrosis during inflammatory response|inhibition of connective tissue replacement involved in inflammatory response wound healing|inhibition of connective tissue replacement during inflammatory response krc 2015-08-25T20:52:30Z biological_process owl:Class GO:1904596 biolink:NamedThing regulation of connective tissue replacement involved in inflammatory response wound healing Any process that modulates the frequency, rate or extent of connective tissue replacement involved in inflammatory response wound healing. tmpzr1t_l9r_go_relaxed.owl regulation of fibrosis during inflammatory response|regulation of connective tissue replacement during inflammatory response krc 2015-08-25T20:52:24Z biological_process owl:Class GO:0032272 biolink:NamedThing negative regulation of protein polymerization Any process that stops, prevents, or reduces the frequency, rate or extent of the process of creating protein polymers. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein polymerization|inhibition of protein polymerization|down regulation of protein polymerization|downregulation of protein polymerization biological_process owl:Class GO:0060259 biolink:NamedThing regulation of feeding behavior Any process that modulates the rate, frequency or extent of the behavior associated with the intake of food. tmpzr1t_l9r_go_relaxed.owl regulation of feeding behaviour biological_process owl:Class GO:0010257 biolink:NamedThing NADH dehydrogenase complex assembly The aggregation, arrangement and bonding together of a set of components to form an NADH dehydrogenase complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090188 biolink:NamedThing negative regulation of pancreatic juice secretion Any process that decreases the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:03:24Z biological_process owl:Class GO:0001831 biolink:NamedThing trophectodermal cellular morphogenesis The morphogenesis of trophectoderm cells. tmpzr1t_l9r_go_relaxed.owl trophectoderm cellular morphogenesis See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19', 'TS5, trophectoderm ; EMAP:28' and 'TS6, trophectoderm ; EMAP:39'. biological_process owl:Class GO:0046247 biolink:NamedThing terpene catabolic process The chemical reactions and pathways resulting in the breakdown of terpenes, any of a large group of hydrocarbons made up of isoprene units. tmpzr1t_l9r_go_relaxed.owl terpene breakdown|terpene catabolism|terpene degradation biological_process owl:Class GO:0089701 biolink:NamedThing U2AF complex A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point. tmpzr1t_l9r_go_relaxed.owl U2 accessory factor|U2AF cellular_component owl:Class GO:0002279 biolink:NamedThing mast cell activation involved in immune response The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl mast cell activation during immune response biological_process owl:Class GO:0045576 biolink:NamedThing mast cell activation The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033066 biolink:NamedThing Rad51B-Rad51C complex A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B and RAD51C, or orthologs thereof. tmpzr1t_l9r_go_relaxed.owl BC complex cellular_component owl:Class GO:0090100 biolink:NamedThing positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway tb 2009-11-13T10:55:53Z biological_process owl:Class GO:0075245 biolink:NamedThing positive regulation of oospore formation Any process that activates, maintains or increases the frequency, rate or extent of oospore formation, a process in which male and female gametangia develop and fuse to form a thick-walled resting spore of oomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043941 biolink:NamedThing positive regulation of sexual sporulation resulting in formation of a cellular spore Any process that activates, maintains or increases the frequency, rate or extent of the formation of cellular spores derived from the products of meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006795 biolink:NamedThing regulation of phosphorus utilization Any process that modulates the frequency, rate or extent of phosphorus utilization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080139 biolink:NamedThing borate efflux transmembrane transporter activity Enables the transfer of borate from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl boron efflux transmembrane transporter activity dhl 2009-05-19T04:11:45Z molecular_function owl:Class GO:1902367 biolink:NamedThing negative regulation of Notch signaling pathway involved in somitogenesis Any process that stops, prevents or reduces the frequency, rate or extent of Notch signaling pathway involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of N signalling pathway involved in somitogenesis|negative regulation of N signalling pathway involved in somitogenesis|downregulation of N signaling pathway involved in somitogenesis|downregulation of Notch receptor signaling pathway involved in formation of mesodermal clusters|downregulation of Notch-receptor signaling pathway involved in somitogenesis|negative regulation of Notch receptor signalling pathway involved in somitogenesis|downregulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters|inhibition of Notch-receptor signalling pathway involved in somitogenesis|negative regulation of Notch signalling pathway involved in somitogenesis|down regulation of Notch-receptor signalling pathway involved in somitogenesis|down regulation of N signaling pathway involved in formation of mesodermal clusters|inhibition of Notch signalling pathway involved in somitogenesis|inhibition of Notch signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch-receptor signalling pathway involved in somitogenesis|negative regulation of N signalling pathway involved in formation of mesodermal clusters|downregulation of Notch signalling pathway involved in formation of mesodermal clusters|down regulation of Notch receptor signaling pathway involved in formation of mesodermal clusters|down regulation of Notch receptor signaling pathway involved in somitogenesis|down-regulation of Notch receptor signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch receptor signaling pathway involved in somitogenesis|inhibition of Notch signaling pathway involved in somitogenesis|downregulation of Notch signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters|down regulation of Notch signalling pathway involved in somitogenesis|negative regulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters|down regulation of Notch receptor signalling pathway involved in somitogenesis|negative regulation of Notch receptor signaling pathway involved in formation of mesodermal clusters|negative regulation of Notch signalling pathway involved in formation of mesodermal clusters|down regulation of Notch signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch receptor signalling pathway involved in formation of mesodermal clusters|down-regulation of Notch signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch receptor signalling pathway involved in somitogenesis|downregulation of Notch signalling pathway involved in somitogenesis|negative regulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters|negative regulation of Notch receptor signaling pathway involved in somitogenesis|downregulation of Notch receptor signaling pathway involved in somitogenesis|down regulation of Notch receptor signalling pathway involved in formation of mesodermal clusters|down-regulation of Notch signalling pathway involved in somitogenesis|negative regulation of Notch-receptor signaling pathway involved in somitogenesis|inhibition of Notch receptor signalling pathway involved in formation of mesodermal clusters|down-regulation of N signaling pathway involved in somitogenesis|down regulation of N signaling pathway involved in somitogenesis|down-regulation of Notch signaling pathway involved in somitogenesis|inhibition of Notch-receptor signalling pathway involved in formation of mesodermal clusters|downregulation of N signalling pathway involved in somitogenesis|inhibition of Notch receptor signaling pathway involved in somitogenesis|inhibition of N signalling pathway involved in formation of mesodermal clusters|down-regulation of Notch-receptor signaling pathway involved in somitogenesis|inhibition of Notch receptor signaling pathway involved in formation of mesodermal clusters|negative regulation of N signaling pathway involved in somitogenesis|inhibition of Notch signalling pathway involved in formation of mesodermal clusters|downregulation of Notch receptor signalling pathway involved in somitogenesis|inhibition of Notch-receptor signaling pathway involved in formation of mesodermal clusters|negative regulation of Notch receptor signalling pathway involved in formation of mesodermal clusters|downregulation of Notch signaling pathway involved in somitogenesis|inhibition of N signalling pathway involved in somitogenesis|down regulation of Notch signaling pathway involved in somitogenesis|negative regulation of Notch signaling pathway involved in formation of mesodermal clusters|negative regulation of N signaling pathway involved in formation of mesodermal clusters|down regulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters|inhibition of Notch receptor signalling pathway involved in somitogenesis|downregulation of Notch receptor signalling pathway involved in formation of mesodermal clusters|down-regulation of N signalling pathway involved in formation of mesodermal clusters|down regulation of Notch-receptor signaling pathway involved in somitogenesis|down-regulation of Notch signalling pathway involved in formation of mesodermal clusters|down regulation of N signalling pathway involved in formation of mesodermal clusters|downregulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters|down-regulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters|inhibition of Notch-receptor signaling pathway involved in somitogenesis|downregulation of N signalling pathway involved in formation of mesodermal clusters|inhibition of N signaling pathway involved in formation of mesodermal clusters|down regulation of Notch signalling pathway involved in formation of mesodermal clusters|down-regulation of N signalling pathway involved in somitogenesis|down regulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters|inhibition of N signaling pathway involved in somitogenesis|downregulation of N signaling pathway involved in formation of mesodermal clusters|down-regulation of N signaling pathway involved in formation of mesodermal clusters|negative regulation of Notch-receptor signalling pathway involved in somitogenesis|downregulation of Notch-receptor signalling pathway involved in somitogenesis dph 2013-08-20T18:27:20Z biological_process owl:Class GO:1902366 biolink:NamedThing regulation of Notch signaling pathway involved in somitogenesis Any process that modulates the frequency, rate or extent of Notch signaling pathway involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of N signalling pathway involved in somitogenesis|regulation of Notch receptor signaling pathway involved in somitogenesis|regulation of N signaling pathway involved in formation of mesodermal clusters|regulation of Notch-receptor signaling pathway involved in somitogenesis|regulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters|regulation of Notch receptor signalling pathway involved in formation of mesodermal clusters|regulation of N signalling pathway involved in formation of mesodermal clusters|regulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters|regulation of Notch receptor signalling pathway involved in somitogenesis|regulation of N signaling pathway involved in somitogenesis|regulation of Notch-receptor signalling pathway involved in somitogenesis|regulation of Notch receptor signaling pathway involved in formation of mesodermal clusters|regulation of Notch signalling pathway involved in somitogenesis|regulation of Notch signaling pathway involved in formation of mesodermal clusters|regulation of Notch signalling pathway involved in formation of mesodermal clusters dph 2013-08-20T18:24:23Z biological_process owl:Class GO:0140568 biolink:NamedThing extraction of mislocalized protein from membrane The removal of a mislocalized protein from a cellular membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20237 pg 2020-12-15T07:35:10Z biological_process owl:Class GO:0033070 biolink:NamedThing ansamycin biosynthetic process The chemical reactions and pathways leading to the formation of ansamycins, any of a group of complex macrolactam compounds characterized by a cyclic structure in which an aliphatic ansa chain forms a bridge between two non-adjacent positions of a cyclic p-system; many exhibit antibacterial, antifungal or antitumor activity. tmpzr1t_l9r_go_relaxed.owl ansamycin biosynthesis|ansamycin formation|ansamycin synthesis|ansamycin anabolism biological_process owl:Class GO:0046226 biolink:NamedThing coumarin catabolic process The chemical reactions and pathways resulting in the breakdown of coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. tmpzr1t_l9r_go_relaxed.owl coumarin degradation|coumarin catabolism|coumarin breakdown biological_process owl:Class GO:0046271 biolink:NamedThing phenylpropanoid catabolic process The chemical reactions and pathways resulting in the breakdown of aromatic derivatives of trans-cinnamic acid. tmpzr1t_l9r_go_relaxed.owl phenylpropanoid catabolism|phenylpropanoid degradation|phenylpropanoid breakdown biological_process owl:Class GO:0070185 biolink:NamedThing mitochondrial valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA in a mitochondrion, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102949 biolink:NamedThing 1,2-rhamnosyltransferase activity Catalysis of the reaction: isoorientin + an L-rhamonsylated rhamnosyl acceptor = isoorientin 2'-O-rhamnoside + a non rhamnosylated rhamnosyl acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9082 molecular_function owl:Class GO:0061944 biolink:NamedThing negative regulation of protein K48-linked ubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of K48-linked ubiquitination, a protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-22T11:37:18Z biological_process owl:Class GO:1902915 biolink:NamedThing negative regulation of protein polyubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein polyubiquitination. tmpzr1t_l9r_go_relaxed.owl down regulation of protein polyubiquitylation|down regulation of protein polyubiquitinylation|negative regulation of protein polyubiquitylation|downregulation of protein polyubiquitination|downregulation of protein polyubiquitylation|inhibition of protein polyubiquitylation|down-regulation of protein polyubiquitylation|down regulation of protein polyubiquitination|downregulation of polyubiquitin|down-regulation of protein polyubiquitination|inhibition of polyubiquitin|negative regulation of protein polyubiquitinylation|negative regulation of polyubiquitin|down regulation of polyubiquitin|down-regulation of polyubiquitin|down-regulation of protein polyubiquitinylation|inhibition of protein polyubiquitinylation|inhibition of protein polyubiquitination|downregulation of protein polyubiquitinylation di 2014-04-18T22:09:58Z biological_process owl:Class GO:0043474 biolink:NamedThing pigment metabolic process involved in pigmentation The chemical reactions and pathways involving a pigment, any general or particular coloring matter in living organisms, resulting in the deposition or aggregation of pigment in an organism, tissue or cell. tmpzr1t_l9r_go_relaxed.owl pigment metabolism during pigmentation|pigment metabolic process during pigmentation biological_process owl:Class GO:0098750 biolink:NamedThing FYXD domain binding Binding to a FXYD domain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015267 biolink:NamedThing channel activity Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. tmpzr1t_l9r_go_relaxed.owl pore class transporter activity|substrate-specific channel activity|nonselective channel activity|channel-forming toxin activity|pore activity|alpha-type channel activity|channel/pore class transporter activity Reactome:R-HSA-3779381|Reactome:R-HSA-8953430|TC:1 GO:0022838|GO:0015249|GO:0015268 molecular_function owl:Class GO:0018564 biolink:NamedThing carbazole 1,9a-dioxygenase activity Catalysis of the reaction: carbazole + NADH + O2 + H+ = NAD+ + 2'-aminobiphenyl-2,3-diol. tmpzr1t_l9r_go_relaxed.owl carbazole 1,9alpha-dioxygenase activity UM-BBD_reactionID:r0456|EC:1.13.11.- molecular_function owl:Class GO:0008377 biolink:NamedThing light-induced release of internally sequestered calcium ion The process in which the detection of light triggers the release of internally sequestered calcium ions. tmpzr1t_l9r_go_relaxed.owl light-induced release of calcium from internal store|light-induced release of internally stored calcium ion (Ca2+)|light-induced release of internally sequestered calcium ion (Ca2+) biological_process owl:Class GO:0043103 biolink:NamedThing hypoxanthine salvage Any process that generates hypoxanthine, 6-hydroxy purine, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl adenine, hypoxanthine and their nucleoside salvage|guanine, xanthine and their nucleoside salvage biological_process owl:Class GO:0002900 biolink:NamedThing positive regulation of central B cell deletion Any process that activates or increases the frequency, rate, or extent of central B cell deletion. tmpzr1t_l9r_go_relaxed.owl up regulation of central B cell deletion|up-regulation of central B cell deletion|stimulation of central B cell deletion|upregulation of central B cell deletion|activation of central B cell deletion biological_process owl:Class GO:0021526 biolink:NamedThing medial motor column neuron differentiation The process in which differentiating motor neurons in the neural tube acquire the specialized structural and/or functional features of medial motor column neurons. Medial motor column neurons are generated at all rostrocaudal levels and send axons to the axial muscles (medial group) and to the body wall muscles (lateral group). Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021515 biolink:NamedThing cell differentiation in spinal cord The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the spinal cord. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048140 biolink:NamedThing male germ-line cyst encapsulation Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the male gonad. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034556 biolink:NamedThing nitrobenzoate nitroreductase activity Catalysis of the reaction: o-nitrobenzoate + NADPH + H+ = o-hydroxylaminobenzoate + NADP+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0849|EC:1.7.1.- molecular_function owl:Class GO:0106316 biolink:NamedThing nitrite reductase NADH activity Catalysis of the reaction: ammonium hydroxide + 3 NAD+ + H2O = nitrite + 3 NADH + 3 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:24628 hjd 2020-09-23T14:34:02Z molecular_function owl:Class GO:0008942 biolink:NamedThing nitrite reductase [NAD(P)H] activity Catalysis of the reaction: ammonium hydroxide + 3 NAD(P)+ + H2O = nitrite + 3 NAD(P)H + 3 H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H2:nitrite oxidoreductase activity|ammonium-hydroxide:NAD(P)+ oxidoreductase activity|nitrite reductase (reduced nicotinamide adenine dinucleotide (phosphate)) activity|NADH-nitrite oxidoreductase activity|assimilatory nitrite reductase activity|nitrite reductase [NAD(P)H2]|NADPH-nitrite reductase activity|NAD(P)H:nitrite oxidoreductase activity KEGG_REACTION:R00789|MetaCyc:NITRITREDUCT-RXN|KEGG_REACTION:R00787|EC:1.7.1.4 Note that this function was formerly EC:1.6.6.4. molecular_function owl:Class GO:2000152 biolink:NamedThing regulation of ubiquitin-specific protease activity Any process that modulates the frequency, rate or extent of regulation of ubiquitin-specific protease activity (deubiquitinase) activity. tmpzr1t_l9r_go_relaxed.owl regulation of UCH2|regulation of deubiquitinase activity|regulation of UBP tb 2010-10-01T10:09:28Z biological_process owl:Class GO:0060369 biolink:NamedThing positive regulation of Fc receptor mediated stimulatory signaling pathway Any process that increases the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway. The Fc receptor mediated stimulatory signaling pathway is a series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl positive regulation of Fc receptor mediated stimulatory signalling pathway biological_process owl:Class GO:0060163 biolink:NamedThing subpallium neuron fate commitment The process in which in the subpallium, the developmental fate of a cell becomes restricted such that it will develop into a neuron. The subpallium is the base region of the telencephalon. tmpzr1t_l9r_go_relaxed.owl subpallium neuronal precursor fate commitment biological_process owl:Class GO:0000353 biolink:NamedThing formation of quadruple SL/U4/U5/U6 snRNP Formation of a quadruple snRNP complex composed of the spliced leader (SL) RNA along with the U4/U6-U5 tri-snRNP complex. Interactions that may facilitate this include a duplex between the SL and U6 RNAs and interactions between the U5 RNA and the exon sequence at the 5' splice site within the SL RNA. tmpzr1t_l9r_go_relaxed.owl Note that this step is analogous to 5' splice site selection in cis-splicing. biological_process owl:Class GO:0033306 biolink:NamedThing phytol metabolic process The chemical reactions and pathways involving phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl phytol metabolism biological_process owl:Class GO:1903173 biolink:NamedThing fatty alcohol metabolic process The chemical reactions and pathways involving fatty alcohol. tmpzr1t_l9r_go_relaxed.owl fatty alcohol metabolism tt 2014-07-14T01:51:41Z biological_process owl:Class GO:1902427 biolink:NamedThing regulation of water channel activity Any process that modulates the frequency, rate or extent of water channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of aquaporin|regulation of aquaporin permeability bf 2013-09-23T12:56:31Z biological_process owl:Class GO:0034587 biolink:NamedThing piRNA metabolic process The chemical reactions and pathways involving piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. tmpzr1t_l9r_go_relaxed.owl piRNA metabolism|Piwi-associated RNA metabolic process biological_process owl:Class GO:1901229 biolink:NamedThing regulation of non-canonical Wnt signaling pathway via JNK cascade Any process that modulates the frequency, rate or extent of non-canonical Wnt signaling pathway via JNK cascade. tmpzr1t_l9r_go_relaxed.owl regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|regulation of non-canonical Wnt-activated signaling pathway via JNK cascade|regulation of non-canonical Wnt receptor signalling pathway via JNK cascade vk 2012-08-07T14:14:16Z biological_process owl:Class GO:0046040 biolink:NamedThing IMP metabolic process The chemical reactions and pathways involving IMP, inosine monophosphate. tmpzr1t_l9r_go_relaxed.owl IMP metabolism biological_process owl:Class GO:0006545 biolink:NamedThing glycine biosynthetic process The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid. tmpzr1t_l9r_go_relaxed.owl glycine biosynthesis|glycine formation|glycine anabolism|glycine synthesis MetaCyc:GLYCINE-SYN2-PWY biological_process owl:Class GO:0006544 biolink:NamedThing glycine metabolic process The chemical reactions and pathways involving glycine, aminoethanoic acid. tmpzr1t_l9r_go_relaxed.owl glycine metabolism biological_process owl:Class GO:1903724 biolink:NamedThing positive regulation of centriole elongation Any process that activates or increases the frequency, rate or extent of centriole elongation. tmpzr1t_l9r_go_relaxed.owl activation of centriole elongation|up regulation of centriole elongation|up-regulation of centriole elongation|upregulation of centriole elongation als 2014-12-09T16:36:20Z biological_process owl:Class GO:1903722 biolink:NamedThing regulation of centriole elongation Any process that modulates the frequency, rate or extent of centriole elongation. tmpzr1t_l9r_go_relaxed.owl als 2014-12-09T16:36:02Z biological_process owl:Class GO:0031999 biolink:NamedThing negative regulation of fatty acid beta-oxidation Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid beta-oxidation. tmpzr1t_l9r_go_relaxed.owl down regulation of fatty acid beta-oxidation|inhibition of fatty acid beta-oxidation|downregulation of fatty acid beta-oxidation|down-regulation of fatty acid beta-oxidation biological_process owl:Class GO:1904477 biolink:NamedThing positive regulation of small GTPase binding Any process that activates or increases the frequency, rate or extent of small GTPase binding. tmpzr1t_l9r_go_relaxed.owl up regulation of small GTPase binding|up-regulation of small GTPase binding|upregulation of small GTPase binding|positive regulation of Ras GTPase binding|activation of Ras GTPase binding https://github.com/geneontology/go-ontology/issues/18750 sl 2015-07-10T22:47:43Z biological_process owl:Class GO:0042194 biolink:NamedThing quinate biosynthetic process The chemical reactions and pathways resulting in the formation of quinate, the anion of quinic acid. tmpzr1t_l9r_go_relaxed.owl quinic acid biosynthetic process|quinic acid biosynthesis|quinate biosynthesis|quinate synthesis|quinate formation|quinate anabolism biological_process owl:Class GO:0001861 biolink:NamedThing complement component C4b receptor activity Combining with the C4b product of the classical complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016019 biolink:NamedThing peptidoglycan immune receptor activity Combining with a peptidoglycan and transmitting the signal to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl peptidoglycan recognition activity|peptidoglycan receptor activity Note that only peptidoglycan recognition proteins with receptor activity should be annotated to this term; otherwise use 'peptidoglycan binding ; GO:0042834' instead. molecular_function owl:Class GO:0120158 biolink:NamedThing positive regulation of collagen catabolic process Any process that activates or increases the frequency, rate or extent of collagen catabolism. Collagen catabolism is the proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl up regulation of collagen catabolic process|positive regulation of collagen degradation|upregulation of collagen catabolic process|positive regulation of collagen catabolism|positive regulation of collagen breakdown|activation of collagen catabolic process|up-regulation of collagen catabolic process krc 2018-05-11T16:31:42Z biological_process owl:Class GO:1902618 biolink:NamedThing cellular response to fluoride Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoride stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2014-01-10T19:41:58Z biological_process owl:Class GO:0005031 biolink:NamedThing tumor necrosis factor-activated receptor activity Combining with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages, to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl tumor necrosis factor receptor activity|TNF receptor activity, type II|tumor necrosis factor receptor activity, type II|TNF receptor activity|NGF/TNF (6 C-domain) receptor activity|tumor necrosis factor receptor activity, type I|TNF receptor activity, type I GO:0005033|GO:0005032 molecular_function owl:Class GO:1902115 biolink:NamedThing regulation of organelle assembly Any process that modulates the frequency, rate or extent of organelle assembly. tmpzr1t_l9r_go_relaxed.owl pr 2013-05-14T09:43:21Z biological_process owl:Class GO:0002728 biolink:NamedThing negative regulation of natural killer cell cytokine production Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell cytokine production. tmpzr1t_l9r_go_relaxed.owl down regulation of natural killer cell cytokine production|negative regulation of NK cell cytokine production|inhibition of natural killer cell cytokine production|downregulation of natural killer cell cytokine production|down-regulation of natural killer cell cytokine production biological_process owl:Class GO:0002727 biolink:NamedThing regulation of natural killer cell cytokine production Any process that modulates the frequency, rate, or extent of natural killer cell cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell cytokine production biological_process owl:Class GO:0061502 biolink:NamedThing early endosome to recycling endosome transport The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the recycling endosomes. tmpzr1t_l9r_go_relaxed.owl dph 2013-01-04T07:24:56Z biological_process owl:Class GO:0098927 biolink:NamedThing vesicle-mediated transport between endosomal compartments A cellular transport process in which transported substances are moved in membrane-bounded vesicles between endosomal compartments, e.g, between early endosome and sorting endosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016428 biolink:NamedThing tRNA (cytosine-5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 5-methylcytosine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA (cytosine-5-)-methyltransferase activity|transfer RNA cytosine 5-methyltransferase activity|transfer ribonucleate cytosine 5-methyltransferase activity Reactome:R-HSA-6782419|Reactome:R-HSA-6782388|Reactome:R-HSA-8932765|Reactome:R-HSA-6785409|Reactome:R-HSA-6785438 molecular_function owl:Class GO:0034547 biolink:NamedThing N-cyclopropylmelamine deaminase activity Catalysis of the reaction: cyromazine + H2O = N-cyclopropylammeline + NH3. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8018|UM-BBD_reactionID:r0825 molecular_function owl:Class GO:0042066 biolink:NamedThing perineurial glial growth Glial cell growth that occurs in the perineurium, a cell layer that ensheaths projections of peripheral nerves, such as motor axons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042065 biolink:NamedThing glial cell growth Growth of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004555 biolink:NamedThing alpha,alpha-trehalase activity Catalysis of the reaction: alpha,alpha-trehalose + H2O = 2 D-glucose. tmpzr1t_l9r_go_relaxed.owl alpha,alpha-trehalose glucohydrolase activity RHEA:32675|MetaCyc:TREHALA-RXN|EC:3.2.1.28|Reactome:R-HSA-188985 molecular_function owl:Class GO:0015927 biolink:NamedThing trehalase activity Catalysis of the hydrolysis of trehalose or a trehalose derivative. tmpzr1t_l9r_go_relaxed.owl MetaCyc:TREHALA-RXN molecular_function owl:Class GO:0060392 biolink:NamedThing negative regulation of SMAD protein signal transduction Any process that decreases the rate, frequency or extent of the SMAD protein signaling pathway. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl negative regulation of SMAD protein import into nucleus|negative regulation of SMAD protein nuclear translocation biological_process owl:Class GO:0034491 biolink:NamedThing neutral amino acid transmembrane import into vacuole The directed movement of neutral amino acids into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050114 biolink:NamedThing myo-inosose-2 dehydratase activity Catalysis of the reaction: 2,4,6/3,5-pentahydroxycyclohexanone = 3D-3,5/4-trihydroxycyclohexane-1,2-dione + H(2)O. tmpzr1t_l9r_go_relaxed.owl 2,4,6/3,5-pentahydroxycyclohexanone hydro-lyase activity|ketoinositol dehydratase activity|2,4,6/3,5-pentahydroxycyclohexanone hydro-lyase (3,5/4-trihydroxycyclohexa-1,2-dione-forming)|inosose 2,3-dehydratase activity MetaCyc:MYO-INOSOSE-2-DEHYDRATASE-RXN|RHEA:14065|KEGG_REACTION:R02782|EC:4.2.1.44 molecular_function owl:Class GO:0102378 biolink:NamedThing steviolmonoside glucosyltransferase activity Catalysis of the reaction: steviolmonoside + UDP-alpha-D-glucose = rubusoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13512 molecular_function owl:Class GO:0140082 biolink:NamedThing SUMO-ubiquitin ligase activity Isoenergetic transfer of SUMO from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin -> Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl pg 2017-08-08T14:46:50Z molecular_function owl:Class GO:0061665 biolink:NamedThing SUMO ligase activity Catalysis of the transfer of SUMO to a substrate protein via the reaction X-SUMO + S --> X + S-SUMO, where X is either an E2 or E3 enzyme, the X-SUMO linkage is a thioester bond, and the S-SUMO linkage is an isopeptide bond between the C-terminal amino acid of SUMO and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T14:00:44Z molecular_function owl:Class GO:0002450 biolink:NamedThing B cell antigen processing and presentation The process in which a B cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte antigen processing and presentation|B lymphocyte antigen processing and presentation|B-cell antigen processing and presentation biological_process owl:Class GO:0009722 biolink:NamedThing detection of cytokinin stimulus The series of events in which a cytokinin stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of cytokinin stimulus biological_process owl:Class GO:0009720 biolink:NamedThing detection of hormone stimulus The series of events in which a hormone stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of hormone stimulus biological_process owl:Class GO:1902123 biolink:NamedThing (-)-pinoresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (-)-pinoresinol degradation|(-)-pinoresinol catabolism|(-)-pinoresinol breakdown ms 2013-05-21T08:49:05Z biological_process owl:Class GO:1904851 biolink:NamedThing positive regulation of establishment of protein localization to telomere Any process that activates or increases the frequency, rate or extent of establishment of protein localization to telomere. tmpzr1t_l9r_go_relaxed.owl up-regulation of establishment of protein localization to chromosome, telomeric region|positive regulation of establishment of protein localisation to telomere|positive regulation of establishment of protein localization to chromosome, telomeric region|activation of establishment of protein localisation to telomere|activation of establishment of protein localization to chromosome, telomeric region|activation of establishment of protein localization to telomere|upregulation of establishment of protein localization to telomere|up-regulation of establishment of protein localization to telomere|upregulation of establishment of protein localisation to telomere|upregulation of establishment of protein localization to chromosome, telomeric region|up regulation of establishment of protein localization to chromosome, telomeric region|up regulation of establishment of protein localization to telomere|up-regulation of establishment of protein localisation to telomere|up regulation of establishment of protein localisation to telomere nc 2015-12-10T15:37:58Z biological_process owl:Class GO:0070203 biolink:NamedThing regulation of establishment of protein localization to telomere Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location in the telomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of protein localisation to telomere biological_process owl:Class GO:0070308 biolink:NamedThing lens fiber cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a lens fiber cell. A lens fiber cell is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl lens fibre cell fate commitment biological_process owl:Class GO:2000965 biolink:NamedThing positive regulation of cellooligosaccharide catabolic process Any process that activates or increases the frequency, rate or extent of cellooligosaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellooligosaccharide catabolism tt 2011-08-01T02:28:47Z biological_process owl:Class GO:2000963 biolink:NamedThing regulation of cellooligosaccharide catabolic process Any process that modulates the frequency, rate or extent of cellooligosaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellooligosaccharide catabolism tt 2011-08-01T02:28:36Z biological_process owl:Class GO:0043197 biolink:NamedThing dendritic spine A small, membranous protrusion from a dendrite that forms a postsynaptic compartment, typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable:they can be thin, stubby, mushroom, or branched, with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity. tmpzr1t_l9r_go_relaxed.owl stubby dendritic spine|sessile dendritic spine|dendrite spine|branched dendritic spine|thin dendritic spine|mushroom dendritic spine NIF_Subcellular:sao1799103720|Wikipedia:Dendritic_spine cellular_component owl:Class GO:0046280 biolink:NamedThing chalcone catabolic process The chemical reactions and pathways resulting in the breakdown of chalcone, phenyl steryl ketone or its hydroxylated derivatives. tmpzr1t_l9r_go_relaxed.owl chalcone breakdown|chalcone catabolism|chalcone degradation biological_process owl:Class GO:0043767 biolink:NamedThing pyrrolysyl-tRNA synthetase activity Catalysis of the reaction: ATP + L-pyrrolysine + tRNA(Pyl) = AMP + diphosphate + L-pyrrolysyl-tRNA(Pyl). tmpzr1t_l9r_go_relaxed.owl PylRS|pyrrolysine-tRNA ligase activity RHEA:19277|MetaCyc:6.1.1.26-RXN|EC:6.1.1.26 molecular_function owl:Class GO:0046455 biolink:NamedThing organosilicon catabolic process The chemical reactions and pathways resulting in the breakdown of organosilicons, any organic compound that contains silicon. tmpzr1t_l9r_go_relaxed.owl organosilicon catabolism|organosilicon breakdown|organosilicone catabolic process|organosilicone catabolism|organosilicon degradation biological_process owl:Class GO:1900444 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl down regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|downregulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|down-regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|inhibition of filamentous growth of a population of unicellular organisms in response to biotic stimulus di 2012-04-25T05:56:27Z biological_process owl:Class GO:1900429 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms. tmpzr1t_l9r_go_relaxed.owl down regulation of filamentous growth of a population of unicellular organisms|downregulation of filamentous growth of a population of unicellular organisms|inhibition of filamentous growth of a population of unicellular organisms|down-regulation of filamentous growth of a population of unicellular organisms di 2012-04-25T05:53:43Z biological_process owl:Class GO:0045943 biolink:NamedThing positive regulation of transcription by RNA polymerase I Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase I promoter|positive regulation of transcription from Pol I promoter|up regulation of transcription from RNA polymerase I promoter|up-regulation of transcription from RNA polymerase I promoter|stimulation of transcription from RNA polymerase I promoter|activation of transcription from RNA polymerase I promoter|upregulation of transcription from RNA polymerase I promoter biological_process owl:Class GO:0008890 biolink:NamedThing glycine C-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + glycine = L-2-amino-3-oxobutanoate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 2-amino-3-ketobutyrate coenzyme A ligase activity|aminoacetone synthase activity|2-amino-3-ketobutyrate CoA ligase activity|glycine acetyltransferase activity|acetyl-CoA:glycine C-acetyltransferase activity|2-amino-3-ketobutyrate-CoA ligase activity KEGG_REACTION:R00371|RHEA:20736|EC:2.3.1.29|MetaCyc:AKBLIG-RXN molecular_function owl:Class GO:0003220 biolink:NamedThing left ventricular cardiac muscle tissue morphogenesis The process in which the anatomical structures of left cardiac ventricle muscle are generated and organized. tmpzr1t_l9r_go_relaxed.owl left ventricular myocardium morphogenesis dph 2009-10-13T10:18:05Z biological_process owl:Class GO:0055010 biolink:NamedThing ventricular cardiac muscle tissue morphogenesis The process in which the anatomical structures of cardiac ventricle muscle is generated and organized. tmpzr1t_l9r_go_relaxed.owl ventricular heart muscle morphogenesis|cardiac ventricle muscle morphogenesis biological_process owl:Class GO:0016633 biolink:NamedThing galactonolactone dehydrogenase activity Catalysis of the reaction: L-galactono-1,4-lactone + 2 ferricytochrome c = L-ascorbate + 2 ferrocytochrome c. tmpzr1t_l9r_go_relaxed.owl GLDHase activity|L-galactonolactone dehydrogenase activity|GLDase activity|L-galactono-gamma-lactone:ferricytochrome-c oxidoreductase activity|L-galactono-1,4-lactone:ferricytochrome-c oxidoreductase activity|L-galactono-gamma-lactone dehydrogenase activity|L-galactono-1,4-lactone dehydrogenase activity RHEA:32367|EC:1.3.2.3|MetaCyc:GALACTONOLACTONE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0016632 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl EC:1.3.2.- molecular_function owl:Class GO:0044780 biolink:NamedThing bacterial-type flagellum assembly The assembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility. tmpzr1t_l9r_go_relaxed.owl bacterial flagellum assembly jl 2013-03-27T15:00:43Z biological_process owl:Class GO:0030031 biolink:NamedThing cell projection assembly Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon. tmpzr1t_l9r_go_relaxed.owl formation of a cell surface projection|cell projection biogenesis biological_process owl:Class GO:2000094 biolink:NamedThing negative regulation of mesonephric nephron tubule epithelial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:12:28Z biological_process owl:Class GO:0009177 biolink:NamedThing pyrimidine deoxyribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside monophosphate anabolism|pyrimidine deoxyribonucleoside monophosphate biosynthesis|pyrimidine deoxyribonucleoside monophosphate synthesis|pyrimidine deoxyribonucleoside monophosphate formation biological_process owl:Class GO:0045671 biolink:NamedThing negative regulation of osteoclast differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of osteoclast differentiation|down-regulation of osteoclast differentiation|down regulation of osteoclast differentiation|downregulation of osteoclast differentiation biological_process owl:Class GO:0045670 biolink:NamedThing regulation of osteoclast differentiation Any process that modulates the frequency, rate or extent of osteoclast differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016247 biolink:NamedThing channel regulator activity Bonds to and modulates the activity of a channel. A channel catalyzes energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904772 biolink:NamedThing response to tetrachloromethane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrachloromethane stimulus. tmpzr1t_l9r_go_relaxed.owl response to CCL4|response to carbon tetrachloride sl 2015-10-28T20:59:15Z biological_process owl:Class GO:0055121 biolink:NamedThing response to high fluence blue light stimulus by blue high-fluence system Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a high fluence blue light stimulus by the blue high-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue high-fluence system responds to blue light at levels between 100 and 1000 micromols/m2. tmpzr1t_l9r_go_relaxed.owl response to high fluence blue light|response to high fluence blue light by bhf system biological_process owl:Class GO:0098941 biolink:NamedThing anterograde trans-synaptic signaling by trans-synaptic protein complex Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by a trans-synaptic protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099545 biolink:NamedThing trans-synaptic signaling by trans-synaptic complex Cell-cell signaling between presynapse and postsynapse mediated by a trans-synaptic protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032242 biolink:NamedThing regulation of nucleoside transport Any process that modulates the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032246 biolink:NamedThing regulation of pyrimidine nucleoside transport Any process that modulates the frequency, rate or extent of the directed movement of a pyrimidine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051201 biolink:NamedThing negative regulation of prosthetic group metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group. tmpzr1t_l9r_go_relaxed.owl inhibition of prosthetic group metabolic process|negative regulation of coenzyme and prosthetic group metabolic process|down regulation of prosthetic group metabolic process|down-regulation of prosthetic group metabolic process|negative regulation of coenzyme and prosthetic group metabolism|negative regulation of prosthetic group metabolism|downregulation of prosthetic group metabolic process biological_process owl:Class GO:0009143 biolink:NamedThing nucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside triphosphate degradation|nucleoside triphosphate catabolism|nucleoside triphosphate breakdown biological_process owl:Class GO:0102786 biolink:NamedThing stearoyl-[acp] desaturase activity Catalysis of the reaction: O2 + a stearoyl-[acp] + a reduced ferredoxin = 2 H2O + an oleoyl-[acp] + an oxidized ferredoxin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7903|RHEA:11776|EC:1.14.19.2 molecular_function owl:Class GO:2000140 biolink:NamedThing negative regulation of octopamine signaling pathway involved in response to food Any process that stops, prevents, or reduces the frequency, rate or extent of octopamine signaling pathway involved in response to food. tmpzr1t_l9r_go_relaxed.owl negative regulation of octopamine signalling pathway involved in response to food mah 2010-09-30T02:48:10Z biological_process owl:Class GO:2000139 biolink:NamedThing regulation of octopamine signaling pathway involved in response to food Any process that modulates the frequency, rate or extent of octopamine signaling pathway involved in response to food. tmpzr1t_l9r_go_relaxed.owl regulation of octopamine signalling pathway involved in response to food mah 2010-09-30T02:48:07Z biological_process owl:Class GO:0036212 biolink:NamedThing contractile ring maintenance The process in which the contractile ring is maintained, typically in response to an internal or external cue. tmpzr1t_l9r_go_relaxed.owl This term can be used to annotate maintenance of either bacterial or fungal contractile rings. bf 2012-04-26T02:57:39Z biological_process owl:Class GO:0043954 biolink:NamedThing cellular component maintenance The organization process that preserves a cellular component in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl cellular component maintenance at cellular level GO:0071956 biological_process owl:Class GO:0030416 biolink:NamedThing methylamine metabolic process The chemical reactions and pathways involving methylamine (CH3NH2). tmpzr1t_l9r_go_relaxed.owl methylammonium metabolism|methylamine metabolism|methylammonium metabolic process biological_process owl:Class GO:0007110 biolink:NamedThing meiosis I cytokinesis A cell cycle process that results in the division of the cytoplasm of a cell after meiosis I, resulting in the separation of the original cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis after meiosis I biological_process owl:Class GO:0010700 biolink:NamedThing negative regulation of norepinephrine secretion Any process that decreases the frequency, rate or extent of the regulated release of norepinephrine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030837 biolink:NamedThing negative regulation of actin filament polymerization Any process that stops, prevents, or reduces the frequency, rate or extent of actin polymerization. tmpzr1t_l9r_go_relaxed.owl negative regulation of actin polymerization and/or depolymerization|downregulation of actin filament polymerization|negative regulation of actin polymerization|inhibition of actin filament polymerization|down regulation of actin filament polymerization|down-regulation of actin filament polymerization Note that this term was split from 'negative regulation of actin polymerization and/or depolymerization ; GO:0045757' (sibling term 'negative regulation of actin depolymerization ; GO:0030835'). biological_process owl:Class GO:0140361 biolink:NamedThing cyclic-GMP-AMP transmembrane import across plasma membrane The directed movement of cyclic-GMP-AMP from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2019-07-02T15:49:24Z biological_process owl:Class GO:0070729 biolink:NamedThing cyclic nucleotide transport The directed movement of a cyclic nucleotide, any nucleotide in which phosphate group is in diester linkage to two positions on the sugar residue, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-17T03:49:56Z biological_process owl:Class GO:0061641 biolink:NamedThing CENP-A containing chromatin organization Any process that results in the specification, formation or maintenance of the physical structure of CENP-A containing chromatin. tmpzr1t_l9r_go_relaxed.owl centromeric chromatin organization dph 2014-08-27T12:26:14Z biological_process owl:Class GO:0097468 biolink:NamedThing programmed cell death in response to reactive oxygen species Cell death resulting from activation of endogenous cellular processes and occurring as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. tmpzr1t_l9r_go_relaxed.owl PCD in response to reactive oxygen species|reactive oxygen species-mediated programmed cell death|reactive oxygen species-mediated PCD|PCD in response to oxidative stress|programmed cell death in response to oxidative stress pr 2013-02-19T10:03:36Z biological_process owl:Class GO:0009118 biolink:NamedThing regulation of nucleoside metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides. tmpzr1t_l9r_go_relaxed.owl regulation of nucleoside metabolism biological_process owl:Class GO:0051498 biolink:NamedThing syn-copalyl diphosphate synthase activity Catalysis of the reaction: geranylgeranyl diphosphate = 9alpha-copalyl diphosphate. tmpzr1t_l9r_go_relaxed.owl diterpene cyclase activity EC:5.5.1.14|MetaCyc:RXN-8528|RHEA:25524 molecular_function owl:Class GO:0102936 biolink:NamedThing gypsogenate-UDP-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + gypsogenate = gypsogenate-28-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9013 molecular_function owl:Class GO:0002645 biolink:NamedThing positive regulation of tolerance induction Any process that activates or increases the frequency, rate, or extent of tolerance induction. tmpzr1t_l9r_go_relaxed.owl up regulation of tolerance induction|upregulation of tolerance induction|stimulation of tolerance induction|activation of tolerance induction|up-regulation of tolerance induction biological_process owl:Class GO:0045785 biolink:NamedThing positive regulation of cell adhesion Any process that activates or increases the frequency, rate or extent of cell adhesion. tmpzr1t_l9r_go_relaxed.owl activation of cell adhesion|up-regulation of cell adhesion|stimulation of cell adhesion|up regulation of cell adhesion|upregulation of cell adhesion biological_process owl:Class GO:0008914 biolink:NamedThing leucyltransferase activity Catalysis of the reaction: L-leucyl-tRNA + protein = tRNA + L-leucyl-protein. tmpzr1t_l9r_go_relaxed.owl L-leucyl-tRNA:protein leucyltransferase activity|leucyl-tRNA--protein transferase activity|leucyl, phenylalanine-tRNA-protein transferase activity|L/F transferase activity|leucyl-phenylalanine-transfer ribonucleate-protein aminoacyltransferase activity|leucyl/phenylalanyl-tRNA--protein transferase activity|leucyl-phenylalanine-transfer ribonucleate-protein transferase activity EC:2.3.2.6|MetaCyc:LEUCYLTRANSFERASE-RXN|RHEA:12340 molecular_function owl:Class GO:0016755 biolink:NamedThing aminoacyltransferase activity Catalysis of the transfer of an amino-acyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring amino-acyl groups EC:2.3.2.- molecular_function owl:Class GO:2001120 biolink:NamedThing methanofuran biosynthetic process The chemical reactions and pathways resulting in the formation of a methanofuran. tmpzr1t_l9r_go_relaxed.owl methanofuran biosynthesis jl 2011-10-11T12:34:12Z biological_process owl:Class GO:0046835 biolink:NamedThing carbohydrate phosphorylation The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061372 biolink:NamedThing activin receptor signaling pathway involved in heart jogging A series of molecular signals initiated by the binding of a member of the activin family to a receptor on the surface of a target cell, and contributing to the process of heart jogging. tmpzr1t_l9r_go_relaxed.owl activin receptor signalling pathway involved in heart jogging dph 2010-11-03T02:24:46Z biological_process owl:Class GO:0032924 biolink:NamedThing activin receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to an activin receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl activin receptor signalling pathway biological_process owl:Class GO:0005780 biolink:NamedThing extrinsic component of intraperoxisomal membrane The component of the intraperoxisomal membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to intraperoxisomal membrane|intra-peroxisomal peripheral membrane cellular_component owl:Class GO:0051771 biolink:NamedThing negative regulation of nitric-oxide synthase biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme. tmpzr1t_l9r_go_relaxed.owl negative regulation of NO synthase biosynthesis|negative regulation of nitric-oxide synthase (type II) biosynthetic process|negative regulation of NOS biosynthetic process|inhibition of nitric-oxide synthase 2 biosynthetic process|down-regulation of nitric-oxide synthase biosynthetic process|downregulation of nitric-oxide synthase 2 biosynthetic process|inhibition of nitric-oxide synthase biosynthetic process|negative regulation of nitric-oxide synthase (type 2) biosynthesis|down regulation of nitric-oxide synthase biosynthetic process|negative regulation of nitric-oxide synthase (type II) biosynthesis|downregulation of nitric-oxide synthase biosynthetic process|down regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of NOS2 synthase biosynthetic process|negative regulation of NOS biosynthesis|negative regulation of NO synthase biosynthetic process|negative regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of NOS2 synthase biosynthesis|down-regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of nitric-oxide synthase (type 2) biosynthetic process GO:0051774 biological_process owl:Class GO:0030783 biolink:NamedThing [cytochrome c]-methionine S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + [cytochrome c]-methionine = S-adenosyl-L-homocysteine + [cytochrome c]-S-methyl-methionine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:cytochrome c-methionine S-methyltransferase activity|cytochrome c-methionine S-methyltransferase activity EC:2.1.1.123|MetaCyc:2.1.1.123-RXN molecular_function owl:Class GO:0009815 biolink:NamedThing 1-aminocyclopropane-1-carboxylate oxidase activity Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O(2) = CO(2) + dehydroascorbate + ethylene + 2 H(2)O + hydrogen cyanide. Ethene is also known as ethylene. tmpzr1t_l9r_go_relaxed.owl 1-aminocyclopropane-1-carboxylate oxygenase (ethylene-forming)|ACC oxidase activity|aminocyclopropanecarboxylate oxidase activity|ethene-forming enzyme|ethylene-forming enzyme MetaCyc:ETHYL-RXN|RHEA:23640|KEGG_REACTION:R07214|EC:1.14.17.4 molecular_function owl:Class GO:0140278 biolink:NamedThing mitotic division septum assembly The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following mitotic cytokinesis. The progeny cells that form a division septum are not able to exchange intracellular material. tmpzr1t_l9r_go_relaxed.owl pg 2018-10-08T09:46:11Z biological_process owl:Class GO:0000917 biolink:NamedThing division septum assembly The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a division septum are not able to exchange intracellular material. tmpzr1t_l9r_go_relaxed.owl septin assembly and septum formation involved in mitotic cell cycle|formation of division septum involved in mitotic cell cycle|division septum formation involved in cell cycle cytokinesis|septin assembly and septum biosynthesis involved in mitotic cell cycle|division septum formation involved in cell cycle cytokinesis involved in mitotic cell cycle|division septum assembly involved in cell cycle cytokinesis|division septum formation|division septum formation involved in mitotic cell cycle|division septum assembly involved in cell cycle cytokinesis involved in mitotic cell cycle|mitotic division septum assembly|septin assembly and septum formation|septin assembly and septum biosynthesis|formation of division septum|septation GO:1902411|GO:0071937 biological_process owl:Class GO:1902235 biolink:NamedThing regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of an endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of apoptosis triggered by ER stress|regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|regulation of apoptosis in response to ER stress|regulation of apoptosis in response to endoplasmic reticulum stress|regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|regulation of endoplasmic reticulum stress-induced apoptosis|regulation of ER stress-induced apoptosis rl 2013-06-18T15:19:37Z biological_process owl:Class GO:0019504 biolink:NamedThing stachydrine catabolic process The chemical reactions and pathways resulting in the breakdown of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline. tmpzr1t_l9r_go_relaxed.owl stachydrine catabolism|stachydrine degradation|stachydrine breakdown MetaCyc:P561-PWY biological_process owl:Class GO:0006579 biolink:NamedThing amino-acid betaine catabolic process The chemical reactions and pathways resulting in the breakdown of any betaine, the N-trimethyl derivative of an amino acid. tmpzr1t_l9r_go_relaxed.owl betaine catabolic process|betaine catabolism|betaine breakdown|betaine degradation biological_process owl:Class GO:1905149 biolink:NamedThing positive regulation of smooth muscle hypertrophy Any process that activates or increases the frequency, rate or extent of smooth muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl up regulation of smooth muscle hypertrophy|upregulation of smooth muscle hypertrophy|up-regulation of smooth muscle hypertrophy|activation of smooth muscle hypertrophy bc 2016-04-15T12:47:24Z biological_process owl:Class GO:0003270 biolink:NamedThing Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell contributing to the modulation of the frequency, rate or extent of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl Notch signaling pathway involved in regulation of second heart field cardioblast proliferation|Notch signalling pathway involved in regulation of secondary heart field cardioblast proliferation dph 2009-10-15T02:47:00Z biological_process owl:Class GO:0030843 biolink:NamedThing negative regulation of intermediate filament depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate filament depolymerization. tmpzr1t_l9r_go_relaxed.owl down-regulation of intermediate filament depolymerization|negative regulation of intermediate filament polymerization and/or depolymerization|downregulation of intermediate filament depolymerization|down regulation of intermediate filament depolymerization|inhibition of intermediate filament depolymerization Note that this term was split from 'negative regulation of intermediate filament polymerization and/or depolymerization ; GO:0045825' (sibling term 'negative regulation of intermediate filament polymerization ; GO:0030840'). biological_process owl:Class GO:1901880 biolink:NamedThing negative regulation of protein depolymerization Any process that stops, prevents or reduces the frequency, rate or extent of protein depolymerization. tmpzr1t_l9r_go_relaxed.owl inhibition of protein polymer catabolism|down-regulation of protein polymer degradation|downregulation of protein polymer catabolic process|down-regulation of protein polymer catabolic process|downregulation of protein polymer degradation|inhibition of protein polymer catabolic process|negative regulation of protein polymer catabolism|down regulation of protein polymer breakdown|inhibition of protein polymer breakdown|inhibition of protein depolymerization|down-regulation of protein depolymerization|down regulation of protein depolymerization|down regulation of protein polymer catabolic process|negative regulation of protein polymer degradation|downregulation of protein depolymerization|down regulation of protein polymer degradation|negative regulation of protein polymer catabolic process|negative regulation of protein polymer breakdown|inhibition of protein polymer degradation|down-regulation of protein polymer breakdown|down regulation of protein polymer catabolism|downregulation of protein polymer catabolism|down-regulation of protein polymer catabolism|downregulation of protein polymer breakdown rl 2013-02-06T13:57:28Z biological_process owl:Class GO:0070813 biolink:NamedThing hydrogen sulfide metabolic process The chemical reactions and pathways involving hydrogen sulfide, H2S. tmpzr1t_l9r_go_relaxed.owl hydrogen sulphide metabolic process|hydrogen sulphide metabolism|hydrogen sulfide metabolism mah 2009-07-09T10:37:32Z biological_process owl:Class GO:0001994 biolink:NamedThing norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure A process that results in a decrease in the diameter of an artery during the norepinephrine-epinephrine response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl norepinephrine-epinephrine vasoconstriction during blood pressure control|noradrenaline-adrenaline vasoconstriction involved in regulation of blood pressure|norepinephrine-epinephrine vasoconstriction during control of blood pressure|norepinephrine-epinephrine vasoconstriction during blood pressure regulation biological_process owl:Class GO:0047137 biolink:NamedThing N-hydroxy-2-acetamidofluorene reductase activity Catalysis of the reaction: 2-acetamidofluorene + NAD(P)+ + H2O = N-hydroxy-2-acetamidofluorene + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H:N-hydroxy-2-acetamidofluorene N-oxidoreductase activity|N-hydroxy-2-acetylaminofluorene reductase activity|NAD(P)H2:N-hydroxy-2-acetamidofluorene N-oxidoreductase activity|2-acetamidofluorene:NAD(P)+ oxidoreductase activity EC:1.7.1.12|MetaCyc:1.7.1.12-RXN molecular_function owl:Class GO:0038196 biolink:NamedThing type III interferon signaling pathway A series of molecular signals initiated by the binding of a type III interferon to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl type III interferon-activated signaling pathway|interferon lambda signaling pathway bf 2013-11-27T14:25:49Z biological_process owl:Class GO:0002247 biolink:NamedThing clearance of damaged tissue involved in inflammatory response wound healing The series of events leading to removal of necrotic debris that contribute to an inflammatory response. tmpzr1t_l9r_go_relaxed.owl clearance of damaged tissue during inflammatory response biological_process owl:Class GO:0004122 biolink:NamedThing cystathionine beta-synthase activity Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O. tmpzr1t_l9r_go_relaxed.owl serine sulfhydrylase activity|L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|methylcysteine synthase activity|beta-thionase activity|L-serine hydro-lyase (adding homocysteine)|serine sulfhydrase activity Reactome:R-HSA-1614524|MetaCyc:CYSTATHIONINE-BETA-SYNTHASE-RXN|RHEA:10112|EC:4.2.1.22 molecular_function owl:Class GO:0010069 biolink:NamedThing zygote asymmetric cytokinesis in embryo sac The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010070 biolink:NamedThing zygote asymmetric cell division The division of the zygote into two daughter cells that will adopt developmentally distinct potentials. tmpzr1t_l9r_go_relaxed.owl zygote asymmetric cytokinesis biological_process owl:Class GO:0034757 biolink:NamedThing negative regulation of iron ion transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of iron ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down-regulation of iron ion transport|inhibition of iron ion transport|downregulation of iron ion transport|down regulation of iron ion transport|negative regulation of iron transport biological_process owl:Class GO:1904056 biolink:NamedThing positive regulation of cholangiocyte proliferation Any process that activates or increases the frequency, rate or extent of cholangiocyte proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of cholangiocyte proliferation|upregulation of hepatoblast proliferation|up-regulation of hepatoblast proliferation|up-regulation of cholangiocyte proliferation|activation of cholangiocyte proliferation|activation of hepatoblast proliferation|up regulation of hepatoblast proliferation|upregulation of cholangiocyte proliferation|positive regulation of hepatoblast proliferation sl 2015-03-18T17:56:26Z biological_process owl:Class GO:0070777 biolink:NamedThing D-aspartate transport The directed movement of D-aspartate, the D-enantiomer of the anion of (2R)-2-aminobutanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-02T01:42:57Z biological_process owl:Class GO:0015740 biolink:NamedThing C4-dicarboxylate transport The directed movement of a C4-dicarboxylate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A C4-dicarboxylate is the anion of a dicarboxylic acid that contains four carbon atoms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902546 biolink:NamedThing positive regulation of DNA N-glycosylase activity Any process that activates or increases the frequency, rate or extent of DNA N-glycosylase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of DNA glycosylase activity|up regulation of DNA glycosylase activity|upregulation of DNA glycosylase activity|upregulation of endonuclease VIII activity|activation of DNA glycosylase activity|up regulation of DNA N-glycosylase activity|positive regulation of DNA glycosylase activity|positive regulation of endonuclease VIII activity|activation of endonuclease VIII activity|up-regulation of DNA N-glycosylase activity|upregulation of DNA N-glycosylase activity|up-regulation of endonuclease VIII activity|up regulation of endonuclease VIII activity|activation of DNA N-glycosylase activity rph 2013-12-04T14:18:12Z biological_process owl:Class GO:1902544 biolink:NamedThing regulation of DNA N-glycosylase activity Any process that modulates the frequency, rate or extent of DNA N-glycosylase activity. tmpzr1t_l9r_go_relaxed.owl regulation of endonuclease VIII activity|regulation of DNA glycosylase activity rph 2013-12-04T14:17:54Z biological_process owl:Class GO:0051915 biolink:NamedThing induction of synaptic plasticity by chemical substance The process in which a chemical substance activates synaptic plasticity, the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl activation of synaptic plasticity by chemical substance|induction of synaptic plasticity by drug|activation of synaptic plasticity by drug biological_process owl:Class GO:0051914 biolink:NamedThing positive regulation of synaptic plasticity by chemical substance The process in which a chemical substance increases synaptic plasticity, the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl up-regulation of synaptic plasticity by chemical substance|upregulation of synaptic plasticity by chemical substance|positive regulation of synaptic plasticity by drug|stimulation of synaptic plasticity by chemical substance|activation of synaptic plasticity by chemical substance|up regulation of synaptic plasticity by chemical substance biological_process owl:Class GO:0097535 biolink:NamedThing lymphoid lineage cell migration into thymus The movement of a lymphoid lineage cell (also called a lymphoid lineage restricted progenitor cell) into the thymus. Lymphoid lineage cells enter and exit the thymus several times as part of this process. tmpzr1t_l9r_go_relaxed.owl lymphoid lineage restricted progenitor cell migration into thymus pr 2013-11-28T10:48:58Z biological_process owl:Class GO:0097534 biolink:NamedThing lymphoid lineage cell migration The orderly movement of a lymphoid lineage cell from one site to another. A lymphoid lineage cell, also called a lymphoid lineage restricted progenitor cell, is a progenitor cell restricted to the lymphoid lineage. tmpzr1t_l9r_go_relaxed.owl lymphoid lineage restricted progenitor cell migration pr 2013-11-28T10:47:15Z biological_process owl:Class GO:0001966 biolink:NamedThing thigmotaxis The directed movement of a motile cell or organism in response to touch. tmpzr1t_l9r_go_relaxed.owl taxis in response to touch stimulus|taxis in response to mechanical stimulus|stereotaxis biological_process owl:Class GO:0042330 biolink:NamedThing taxis The directed movement of a motile cell or organism in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl directed movement in response to stimulus Wikipedia:Taxis biological_process owl:Class GO:1900744 biolink:NamedThing regulation of p38MAPK cascade Any process that modulates the frequency, rate or extent of p38MAPK cascade. tmpzr1t_l9r_go_relaxed.owl regulation of p38 MAPK cascade|regulation of p38 cascade pm 2012-05-28T02:40:14Z biological_process owl:Class GO:1900200 biolink:NamedThing mesenchymal cell apoptotic process involved in metanephros development Any mesenchymal cell apoptotic process that is involved in metanephros development. tmpzr1t_l9r_go_relaxed.owl mesenchymal cell apoptosis involved in metanephros development yaf 2012-03-21T11:58:05Z biological_process owl:Class GO:0010966 biolink:NamedThing regulation of phosphate transport Any process that modulates the frequency, rate or extent of phosphate transport. Phosphate transport is the directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-20T11:42:50Z biological_process owl:Class GO:0004451 biolink:NamedThing isocitrate lyase activity Catalysis of the reaction: isocitrate = glyoxylate + succinate. tmpzr1t_l9r_go_relaxed.owl ICL activity|isocitrase activity|isocitrate glyoxylate-lyase (succinate-forming)|isocitritase activity|isocitratase activity|threo-DS-isocitrate glyoxylate-lyase activity|isocitrate glyoxylate-lyase activity MetaCyc:ISOCIT-CLEAV-RXN|KEGG_REACTION:R00479|EC:4.1.3.1|RHEA:13245 molecular_function owl:Class GO:0047770 biolink:NamedThing carboxylate reductase activity Catalysis of the reaction: an aldehyde + acceptor + H2O = a carboxylate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl aldehyde:(acceptor) oxidoreductase activity|carboxylic acid reductase activity|aldehyde:acceptor oxidoreductase activity EC:1.2.99.6|MetaCyc:CARBOXYLATE-REDUCTASE-RXN molecular_function owl:Class GO:0071728 biolink:NamedThing beak development The progression of the beak over time from its initial formation until its mature state. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-17T03:52:48Z biological_process owl:Class GO:0042928 biolink:NamedThing ferrichrome import into cell A process in which ferrichrome is transported into the cell by specific cell surface receptors. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine. tmpzr1t_l9r_go_relaxed.owl ferrichrome transport biological_process owl:Class GO:0015687 biolink:NamedThing ferric-hydroxamate import into cell A process in which ferric-hydroxamate, the iron-bound form of the iron chelator hydroxamate, is transported into the cell by specific cell surface receptors. tmpzr1t_l9r_go_relaxed.owl ferric-hydroxamate transport biological_process owl:Class GO:1903357 biolink:NamedThing regulation of transcription initiation from RNA polymerase I promoter Any process that modulates the frequency, rate or extent of transcription initiation from RNA polymerase I promoter. tmpzr1t_l9r_go_relaxed.owl regulation of transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript mah 2014-08-21T10:19:32Z biological_process owl:Class GO:1902373 biolink:NamedThing negative regulation of mRNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of mRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of mRNA degradation|negative regulation of mRNA breakdown|downregulation of mRNA decay|down-regulation of mRNA catabolic process|down-regulation of mRNA decay|inhibition of mRNA breakdown|negative regulation of mRNA catabolism|inhibition of mRNA catabolic process|down-regulation of mRNA catabolism|down regulation of mRNA catabolic process|downregulation of mRNA catabolic process|downregulation of mRNA breakdown|down regulation of mRNA decay|down-regulation of mRNA degradation|negative regulation of mRNA degradation|inhibition of mRNA catabolism|inhibition of mRNA degradation|down-regulation of mRNA breakdown|negative regulation of mRNA decay|downregulation of mRNA catabolism|downregulation of mRNA degradation|down regulation of mRNA breakdown|down regulation of mRNA catabolism|inhibition of mRNA decay bf 2013-08-22T15:16:19Z biological_process owl:Class GO:0047370 biolink:NamedThing succinate-citramalate CoA-transferase activity Catalysis of the reaction: S-citramalate + succinyl-CoA = citramalyl-CoA + succinate. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA:citramalate CoA-transferase activity|citramalate coenzyme A-transferase activity|succinyl coenzyme A-citramalyl coenzyme A transferase activity|itaconate CoA-transferase activity RHEA:38287|MetaCyc:2.8.3.7-RXN molecular_function owl:Class GO:0033730 biolink:NamedThing arogenate dehydrogenase (NADP+) activity Catalysis of the reaction: L-arogenate + NADP+ = L-tyrosine + NADPH + CO2. tmpzr1t_l9r_go_relaxed.owl TyrAAT2|L-arogenate:NADP+ oxidoreductase (decarboxylating) activity|arogenic dehydrogenase activity|TyrAAT1|TyrAa|pretyrosine dehydrogenase activity RHEA:15417|EC:1.3.1.78|MetaCyc:1.3.1.78-RXN molecular_function owl:Class GO:1904005 biolink:NamedThing regulation of phospholipase D activity Any process that modulates the frequency, rate or extent of phospholipase D activity. tmpzr1t_l9r_go_relaxed.owl regulation of lecithinase D activity|regulation of lipophosphodiesterase II activity|regulation of phosphatidylcholine phosphatidohydrolase activity|regulation of choline phosphatase activity sl 2015-03-06T17:20:05Z biological_process owl:Class GO:0010517 biolink:NamedThing regulation of phospholipase activity Any process that modulates the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000091 biolink:NamedThing mitotic anaphase A The cell cycle phase during which the kinetochore microtubules shorten as chromosomes move toward the spindle poles as part of mitosis. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0000090 biolink:NamedThing mitotic anaphase The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0033920 biolink:NamedThing 6-phospho-beta-galactosidase activity Catalysis of the reaction: a 6-phospho-beta-D-galactoside + H2O = 6-phospho-D-galactose + an alcohol. tmpzr1t_l9r_go_relaxed.owl 6-phospho-beta-D-galactosidase activity|beta-D-phosphogalactoside galactohydrolase activity|phospho-beta-D-galactosidase activity|6-phospho-beta-D-galactoside 6-phosphogalactohydrolase activity|phospho-beta-galactosidase activity RHEA:24568|EC:3.2.1.85|MetaCyc:6-PHOSPHO-BETA-GALACTOSIDASE-RXN molecular_function owl:Class GO:1900720 biolink:NamedThing negative regulation of uterine smooth muscle relaxation Any process that stops, prevents or reduces the frequency, rate or extent of uterine smooth muscle relaxation. tmpzr1t_l9r_go_relaxed.owl downregulation of smooth muscle relaxation of the uterus|downregulation of uterine smooth muscle relaxation|down-regulation of uterine smooth muscle relaxation|down regulation of uterine smooth muscle relaxation|inhibition of uterine smooth muscle relaxation|down-regulation of smooth muscle relaxation of the uterus|negative regulation of smooth muscle relaxation of the uterus|inhibition of smooth muscle relaxation of the uterus|down regulation of smooth muscle relaxation of the uterus jl 2012-05-24T03:12:49Z biological_process owl:Class GO:1901081 biolink:NamedThing negative regulation of relaxation of smooth muscle Any process that stops, prevents or reduces the frequency, rate or extent of relaxation of smooth muscle. tmpzr1t_l9r_go_relaxed.owl downregulation of relaxation of smooth muscle|inhibition of smooth muscle relaxation|inhibition of relaxation of smooth muscle|down regulation of smooth muscle relaxation|negative regulation of smooth muscle relaxation|down-regulation of relaxation of smooth muscle|down regulation of relaxation of smooth muscle|downregulation of smooth muscle relaxation|down-regulation of smooth muscle relaxation jl 2012-07-04T10:45:31Z biological_process owl:Class GO:0070237 biolink:NamedThing positive regulation of activation-induced cell death of T cells Any process that activates or increases the frequency, rate or extent of activation-induced cell death of T cells. tmpzr1t_l9r_go_relaxed.owl upregulation of activation-induced cell death of T cells|up regulation of activation-induced cell death of T cells|positive regulation of activated T cell apoptosis|positive regulation of antigen-driven apoptosis|positive regulation of activation-induced cell death of T lymphocytes|up-regulation of activation-induced cell death of T cells|stimulation of activation-induced cell death of T cells|positive regulation of activation-induced cell death of T-lymphocytes|activation of activation-induced cell death of T cells|positive regulation of activation-induced cell death of T-cells|positive regulation of AICD biological_process owl:Class GO:1904898 biolink:NamedThing negative regulation of hepatic stellate cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of Ito cell proliferation|negative regulation of perisinusoidal cell proliferation|negative regulation of Ito cell proliferation|inhibition of hepatic perisinusoidal cell proliferation|down-regulation of hepatic stellate cell proliferation|downregulation of perisinusoidal cell proliferation|inhibition of perisinusoidal cell proliferation|downregulation of Ito cell proliferation|negative regulation of hepatic perisinusoidal cell proliferation|down regulation of hepatic stellate cell proliferation|downregulation of hepatic stellate cell proliferation|down-regulation of hepatic perisinusoidal cell proliferation|down regulation of perisinusoidal cell proliferation|inhibition of Ito cell proliferation|down-regulation of Ito cell proliferation|down-regulation of perisinusoidal cell proliferation|downregulation of hepatic perisinusoidal cell proliferation|inhibition of hepatic stellate cell proliferation|down regulation of hepatic perisinusoidal cell proliferation sl 2016-01-14T15:57:06Z biological_process owl:Class GO:0036318 biolink:NamedThing peptide pheromone receptor activity Combining with a peptide pheromone, and transmitting the signal across the membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-30T16:45:14Z molecular_function owl:Class GO:0016503 biolink:NamedThing pheromone receptor activity Combining with a pheromone to initiate a change in cell activity. A pheromone is a substance used in olfactory communication between organisms of the same species eliciting a change in sexual or social behavior. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005729 biolink:NamedThing 2-micrometer circle DNA A plasmid commonly found in Saccharomyces, inherited in a non-Mendelian manner and often present in 100-400 copies. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005727 biolink:NamedThing extrachromosomal circular DNA Circular DNA structures that are not part of a chromosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010176 biolink:NamedThing homogentisate phytyltransferase activity Catalysis of the reaction: homogentisate + phytyl diphosphate + H+ = 2-methyl-6-phytyl-1,4-benzoquinone + CO2 + diphosphate. 2-methyl-6-phytyl-1,4-benzoquinone is also known as 2-methyl-6-phytylplastoquinol. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R07500|RHEA:37975|MetaCyc:RXN-2541 molecular_function owl:Class GO:0010354 biolink:NamedThing homogentisate prenyltransferase activity Catalysis of the transfer of a prenyl group from one compound (donor) to homogentisic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071334 biolink:NamedThing cellular response to rhamnose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rhamnose stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to L-rhamnose stimulus mah 2009-12-10T05:38:38Z biological_process owl:Class GO:1903050 biolink:NamedThing regulation of proteolysis involved in cellular protein catabolic process Any process that modulates the frequency, rate or extent of proteolysis involved in cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of proteolysis during cellular protein catabolism|regulation of peptidolysis involved in cellular protein catabolism|regulation of peptidolysis involved in cellular protein catabolic process|regulation of peptidolysis during cellular protein catabolism|regulation of proteolysis during cellular protein catabolic process|regulation of peptidolysis during cellular protein catabolic process overexpression of cathepsin C propeptide significantly increased the degradation of intestinal alkaline phosphatase (IAP) rl 2014-05-22T18:00:45Z biological_process owl:Class GO:0010954 biolink:NamedThing positive regulation of protein processing Any process that increases the rate, frequency or extent of protein maturation by peptide bond cleavage. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein maturation by peptide bond cleavage tb 2009-04-27T12:09:13Z biological_process owl:Class GO:0043839 biolink:NamedThing lipid A phosphate methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosylmethionine (SAM) to the 1-phosphate group of lipid A. tmpzr1t_l9r_go_relaxed.owl lipid A methyltransferase|lipid A 1-phosphomethyltransferase activity|LmtA|lipid A phosphomethyltransferase activity molecular_function owl:Class GO:0031296 biolink:NamedThing B cell costimulation The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B cell receptor to augment B cell activation. tmpzr1t_l9r_go_relaxed.owl B lymphocyte co-stimulation|B lymphocyte costimulation|B-lymphocyte costimulation|B-lymphocyte co-stimulation|B-cell costimulation|B cell co-stimulation|B-cell co-stimulation biological_process owl:Class GO:0031294 biolink:NamedThing lymphocyte costimulation The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B- or T cell receptor to augment B- or T cell activation. tmpzr1t_l9r_go_relaxed.owl lymphocyte co-stimulation biological_process owl:Class GO:0060938 biolink:NamedThing epicardium-derived cardiac fibroblast cell differentiation The process in which an epicardial cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:28:03Z biological_process owl:Class GO:0060935 biolink:NamedThing cardiac fibroblast cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:20:04Z biological_process owl:Class GO:0110074 biolink:NamedThing positive regulation of apical constriction involved in ventral furrow formation Any process that activates or increases the frequency, rate or extent of apical constriction involved in ventral furrow formation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-12-06T17:39:00Z biological_process owl:Class GO:1900571 biolink:NamedThing diorcinol catabolic process The chemical reactions and pathways resulting in the breakdown of diorcinol. tmpzr1t_l9r_go_relaxed.owl diorcinol breakdown|diorcinol catabolism|diorcinol degradation di 2012-05-15T06:35:22Z biological_process owl:Class GO:2000742 biolink:NamedThing regulation of anterior head development Any process that modulates the frequency, rate or extent of anterior head development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T09:44:09Z biological_process owl:Class GO:0038174 biolink:NamedThing interleukin-17A receptor activity Combining with the cytokine interleukin-17A and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-12T11:01:25Z molecular_function owl:Class GO:0030368 biolink:NamedThing interleukin-17 receptor activity Combining with any member of the interleukin-17 family of cytokines and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-17 receptor activity|IL-17R Wikipedia:Interleukin-17_receptor molecular_function owl:Class GO:0031758 biolink:NamedThing Edg-5 sphingosine 1-phosphate receptor binding Binding to an Edg-5 sphingosine 1-phosphate receptor. tmpzr1t_l9r_go_relaxed.owl Edg-5 sphingosine 1-phosphate receptor ligand molecular_function owl:Class GO:1904879 biolink:NamedThing positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transport via high voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl upregulation of generation of L-type calcium current|positive regulation of generation of L-type calcium current|up-regulation of generation of L-type calcium current|up regulation of generation of L-type calcium current|activation of generation of L-type calcium current sl 2015-12-18T22:30:44Z biological_process owl:Class GO:1902514 biolink:NamedThing regulation of calcium ion transmembrane transport via high voltage-gated calcium channel Any process that modulates the frequency, rate or extent of generation of calcium ion transmembrane transport via high voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl regulation of generation of L-type calcium current dph 2013-11-16T00:04:42Z biological_process owl:Class GO:2000868 biolink:NamedThing negative regulation of estrone secretion Any process that stops, prevents or reduces the frequency, rate or extent of estrone secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion|negative regulation of folliculin secretion bf 2011-07-26T08:50:16Z biological_process owl:Class GO:0032544 biolink:NamedThing plastid translation The chemical reactions and pathways resulting in the formation of a protein in a plastid. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the plastid has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code. tmpzr1t_l9r_go_relaxed.owl plastid protein translation|plastid protein biosynthesis|plastid protein formation|plastid protein anabolism|plastid protein synthesis biological_process owl:Class GO:1900396 biolink:NamedThing positive regulation of kojic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of kojic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of kojic acid synthesis|upregulation of kojic acid formation|activation of kojic acid formation|up regulation of kojic acid biosynthetic process|up-regulation of kojic acid formation|upregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|upregulation of C6H6O4 biosynthesis|up regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|up-regulation of kojic acid synthesis|upregulation of kojic acid biosynthesis|up-regulation of C6H6O4 synthesis|upregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|positive regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|activation of kojic acid biosynthesis|up-regulation of C6H6O4 biosynthesis|activation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|up regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|up regulation of C6H6O4 biosynthesis|activation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|up-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|activation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|positive regulation of kojic acid anabolism|up-regulation of C6H6O4 anabolism|up-regulation of kojic acid biosynthesis|activation of C6H6O4 biosynthesis|positive regulation of C6H6O4 biosynthesis|up regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|positive regulation of C6H6O4 biosynthetic process|activation of C6H6O4 formation|positive regulation of C6H6O4 formation|up regulation of C6H6O4 synthesis|upregulation of kojic acid anabolism|up-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|up regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|activation of C6H6O4 anabolism|upregulation of C6H6O4 anabolism|up regulation of kojic acid formation|activation of kojic acid anabolism|activation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|activation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|up regulation of C6H6O4 anabolism|up-regulation of C6H6O4 formation|activation of C6H6O4 synthesis|positive regulation of C6H6O4 synthesis|upregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|up regulation of kojic acid anabolism|up-regulation of kojic acid anabolism|upregulation of C6H6O4 biosynthetic process|positive regulation of kojic acid synthesis|positive regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|positive regulation of kojic acid biosynthesis|upregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|positive regulation of kojic acid formation|up regulation of C6H6O4 biosynthetic process|upregulation of kojic acid synthesis|up regulation of kojic acid synthesis|activation of C6H6O4 biosynthetic process|up regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|up regulation of kojic acid biosynthesis|upregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|positive regulation of C6H6O4 anabolism|positive regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|positive regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|up-regulation of kojic acid biosynthetic process|positive regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|activation of kojic acid biosynthetic process|up-regulation of C6H6O4 biosynthetic process|up-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|up regulation of C6H6O4 formation|upregulation of C6H6O4 formation|up-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|up-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|upregulation of C6H6O4 synthesis|upregulation of kojic acid biosynthetic process di 2012-04-18T04:20:11Z biological_process owl:Class GO:1902932 biolink:NamedThing positive regulation of alcohol biosynthetic process Any process that activates or increases the frequency, rate or extent of alcohol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of alcohol anabolism|positive regulation of alcohol biosynthesis|up regulation of alcohol synthesis|up-regulation of alcohol formation|activation of alcohol formation|positive regulation of alcohol synthesis|positive regulation of alcohol formation|activation of alcohol synthesis|up-regulation of alcohol anabolism|up regulation of alcohol biosynthetic process|upregulation of alcohol formation|up-regulation of alcohol biosynthetic process|upregulation of alcohol synthesis|positive regulation of alcohol anabolism|up-regulation of alcohol biosynthesis|activation of alcohol biosynthesis|up regulation of alcohol biosynthesis|up-regulation of alcohol synthesis|up regulation of alcohol formation|up regulation of alcohol anabolism|upregulation of alcohol biosynthesis|positive regulation of solventogenesis|upregulation of alcohol biosynthetic process|activation of alcohol biosynthetic process|activation of alcohol anabolism tt 2014-04-22T21:55:19Z biological_process owl:Class GO:1990438 biolink:NamedThing U6 2'-O-snRNA methylation The posttranscriptional addition a methyl group to the 2'-oxygen atom of a nucleotide residue in an U6 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2014-07-31T12:04:21Z biological_process owl:Class GO:1990437 biolink:NamedThing snRNA 2'-O-methylation The posttranscriptional addition of a methyl group to the 2' oxygen atom of a nucleotide residue in an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2014-07-31T11:58:18Z biological_process owl:Class GO:0098696 biolink:NamedThing regulation of neurotransmitter receptor localization to postsynaptic specialization membrane Any process that modulates the frequency, rate or extent of neurotransmitter receptor localization to postsynaptic specialization membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-04-04T16:33:38Z biological_process owl:Class GO:0002034 biolink:NamedThing maintenance of blood vessel diameter homeostasis by renin-angiotensin The process in which the diameter of a blood vessel is changed due to activity of the renin-angiotensin system. tmpzr1t_l9r_go_relaxed.owl renin-angiotensin regulation of blood vessel size|regulation of blood vessel size by renin-angiotensin|regulation of blood vessel diameter by renin-angiotensin https://github.com/geneontology/go-ontology/issues/12253 biological_process owl:Class GO:0003072 biolink:NamedThing renal control of peripheral vascular resistance involved in regulation of systemic arterial blood pressure The renal process that modulates the force with which blood travels through the circulatory system, by impeding blood flow through the peripheral vasculature. tmpzr1t_l9r_go_relaxed.owl renal regulation of systemic arterial blood pressure by control of peripheral vascular resistence|regulation of systemic arterial blood pressure by renal control of peripheral vascular resistence biological_process owl:Class GO:0097499 biolink:NamedThing protein localization to non-motile cilium A process in which a protein is transported to, or maintained in, a location within a non-motile cilium. tmpzr1t_l9r_go_relaxed.owl protein localization to nonmotile primary cilium pr 2013-08-13T12:16:26Z biological_process owl:Class GO:0051340 biolink:NamedThing regulation of ligase activity Any process that modulates the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. tmpzr1t_l9r_go_relaxed.owl ligase regulator biological_process owl:Class GO:2001314 biolink:NamedThing UDP-4-deoxy-4-formamido-beta-L-arabinopyranose catabolic process The chemical reactions and pathways resulting in the breakdown of a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose. tmpzr1t_l9r_go_relaxed.owl UDP-4-deoxy-4-formamido-beta-L-arabinopyranose breakdown|UDP-4-deoxy-4-formamido-beta-L-arabinopyranose catabolism|UDP-4-deoxy-4-formamido-beta-L-arabinopyranose degradation pr 2012-03-22T01:20:01Z biological_process owl:Class GO:2001108 biolink:NamedThing positive regulation of Rho guanyl-nucleotide exchange factor activity Any process that activates or increases the frequency, rate or extent of Rho guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of RhoGEF|positive regulation of Rho guanine nucleotide exchange factor yaf 2011-09-23T10:13:16Z biological_process owl:Class GO:1905099 biolink:NamedThing positive regulation of guanyl-nucleotide exchange factor activity Any process that activates or increases the frequency, rate or extent of guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of guanyl-nucleotide releasing factor|positive regulation of GDP-dissociation stimulator activity|positive regulation of GEF|upregulation of GNRP|activation of GEF|up regulation of guanyl-nucleotide release factor activity|up regulation of guanyl-nucleotide exchange factor activity|up regulation of GEF|upregulation of GDP-dissociation stimulator activity|up-regulation of GNRP|positive regulation of GDS|up-regulation of guanyl-nucleotide releasing factor|up-regulation of GDP-dissociation stimulator activity|upregulation of guanyl-nucleotide releasing factor|activation of guanyl-nucleotide release factor activity|up-regulation of guanyl-nucleotide release factor activity|up regulation of GDS|positive regulation of GNRP|up regulation of GNRP|upregulation of GDS|activation of guanyl-nucleotide exchange factor activity|upregulation of guanyl-nucleotide release factor activity|upregulation of GEF|up-regulation of GDS|up regulation of GDP-dissociation stimulator activity|up-regulation of GEF|activation of guanyl-nucleotide releasing factor|up-regulation of guanyl-nucleotide exchange factor activity|activation of GDP-dissociation stimulator activity|activation of GDS|activation of GNRP|up regulation of guanyl-nucleotide releasing factor|upregulation of guanyl-nucleotide exchange factor activity|positive regulation of guanyl-nucleotide release factor activity https://github.com/geneontology/go-ontology/issues/18750 sl 2016-03-31T16:09:54Z biological_process owl:Class GO:0009341 biolink:NamedThing beta-galactosidase complex A protein complex that possesses beta-galactosidase activity, i.e. catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. In E. coli, the complex is a homotetramer; dimeric and hexameric beta-galactosidase complexes have been observed in other species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015844 biolink:NamedThing monoamine transport The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl GO:0015873 biological_process owl:Class GO:0042489 biolink:NamedThing negative regulation of odontogenesis of dentin-containing tooth Any process that stops, prevents, or reduces the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages which are borne on the jaws, or on other bones in the walls of the mouth or pharynx. tmpzr1t_l9r_go_relaxed.owl downregulation of odontogenesis|down regulation of odontogenesis|negative regulation of odontogenesis|inhibition of odontogenesis|negative regulation of odontogenesis of dentine-containing tooth|negative regulation of odontogenesis of dentine-containing teeth|down-regulation of odontogenesis biological_process owl:Class GO:0042483 biolink:NamedThing negative regulation of odontogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of the formation and development of a tooth or teeth. tmpzr1t_l9r_go_relaxed.owl inhibition of odontogenesis|negative regulation of odontogenesis of calcareous or chitinous tooth|down-regulation of odontogenesis|downregulation of odontogenesis|down regulation of odontogenesis|negative regulation of tooth development GO:0042486 biological_process owl:Class GO:1900381 biolink:NamedThing positive regulation of asperthecin biosynthetic process Any process that activates or increases the frequency, rate or extent of asperthecin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of asperthecin biosynthesis|activation of asperthecin biosynthesis|activation of asperthecin formation|up-regulation of asperthecin biosynthetic process|upregulation of asperthecin formation|up regulation of asperthecin formation|activation of asperthecin biosynthetic process|positive regulation of asperthecin synthesis|up regulation of asperthecin biosynthesis|up regulation of asperthecin biosynthetic process|up-regulation of asperthecin biosynthesis|upregulation of asperthecin biosynthetic process|upregulation of asperthecin synthesis|up-regulation of asperthecin synthesis|activation of asperthecin synthesis|up regulation of asperthecin synthesis|upregulation of asperthecin biosynthesis|up-regulation of asperthecin formation|positive regulation of asperthecin formation di 2012-04-17T01:58:45Z biological_process owl:Class GO:0047216 biolink:NamedThing inositol 3-alpha-galactosyltransferase activity Catalysis of the reaction: myo-inositol + UDP-galactose = O-alpha-D-galactosyl-(1,3)-1D-myo-inositol + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:myo-inositol 1-alpha-D-galactosyltransferase activity|UDP-D-galactose:inositol galactosyltransferase activity|uridine diphosphogalactose-inositol galactosyltransferase activity|UDP-galactose:myo-inositol 3-alpha-D-galactosyltransferase activity|UDPgalactose:myo-inositol 1-alpha-D-galactosyltransferase activity|galactinol synthase activity|inositol 1-alpha-galactosyltransferase activity EC:2.4.1.123|RHEA:12464|MetaCyc:2.4.1.123-RXN molecular_function owl:Class GO:0004931 biolink:NamedThing extracellularly ATP-gated cation channel activity Enables the transmembrane transfer of a cation by a channel that opens when ATP is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl purinoceptor|purinoreceptor|P2X receptor Reactome:R-HSA-877187 Note that this term refers to an activity and not a gene product. Consider also annotating to the molecular function term 'purinergic nucleotide receptor activity ; GO:0001614'. molecular_function owl:Class GO:0032406 biolink:NamedThing MutLbeta complex binding Binding to a MutLbeta mismatch repair complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032404 biolink:NamedThing mismatch repair complex binding Binding to a mismatch repair complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016131 biolink:NamedThing brassinosteroid metabolic process The chemical reactions and pathways involving brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. tmpzr1t_l9r_go_relaxed.owl brassinosteroid metabolism biological_process owl:Class GO:0042445 biolink:NamedThing hormone metabolic process The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. tmpzr1t_l9r_go_relaxed.owl hormone metabolism biological_process owl:Class GO:0071231 biolink:NamedThing cellular response to folic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to vitamin B9|response to folate mah 2009-12-03T02:08:32Z biological_process owl:Class GO:1904710 biolink:NamedThing positive regulation of granulosa cell apoptotic process Any process that activates or increases the frequency, rate or extent of granulosa cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of granulosa cell of ovary apoptotic process|up regulation of granulosa cell of ovary apoptosis|up regulation of granulosa cell of ovary apoptotic process|up regulation of granulosa cell apoptotic process|up-regulation of granulosa cell of ovary apoptosis|up-regulation of granulosa cell apoptotic process|upregulation of granulosa cell of ovary apoptotic process|positive regulation of granulosa cell apoptosis|up-regulation of granulosa cell of ovary apoptotic process|positive regulation of granulosa cell of ovary apoptosis|activation of granulosa cell of ovary apoptotic process|upregulation of granulosa cell of ovary apoptosis|activation of granulosa cell apoptotic process|upregulation of granulosa cell apoptotic process|activation of granulosa cell apoptosis|upregulation of granulosa cell apoptosis|up-regulation of granulosa cell apoptosis|up regulation of granulosa cell apoptosis|activation of granulosa cell of ovary apoptosis sl 2015-10-01T16:09:51Z biological_process owl:Class GO:0060347 biolink:NamedThing heart trabecula formation The process of creating a trabecula in the heart. A trabecula is a tissue element in the form of a small beam, strut or rod. tmpzr1t_l9r_go_relaxed.owl heart trabecula biogenesis|cardiac trabeculation|cardiac trabecula formation|heart trabeculation biological_process owl:Class GO:0102754 biolink:NamedThing chlorophyllide-b:phytyl-diphosphate phytyltransferase activity Catalysis of the reaction: H+ + chlorophyllide b + (E)-3,7,11,15-tetramethylhexadec-2-en-1-yl diphosphate <=> chlorophyll b + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7674 molecular_function owl:Class GO:0021742 biolink:NamedThing abducens nucleus development The process whose specific outcome is the progression of the abducens nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032239 biolink:NamedThing regulation of nucleobase-containing compound transport Any process that modulates the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport biological_process owl:Class GO:1900763 biolink:NamedThing averantin biosynthetic process The chemical reactions and pathways resulting in the formation of averantin. tmpzr1t_l9r_go_relaxed.owl averantin synthesis|averantin formation|averantin biosynthesis|averantin anabolism di 2012-06-04T09:14:52Z biological_process owl:Class GO:0043305 biolink:NamedThing negative regulation of mast cell degranulation Any process that stops, prevents, or reduces the rate of mast cell degranulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of mast cell granule exocytosis|downregulation of mast cell degranulation|down-regulation of mast cell degranulation|down regulation of mast cell degranulation|inhibition of mast cell degranulation biological_process owl:Class GO:2000797 biolink:NamedThing regulation of amniotic stem cell differentiation Any process that modulates the frequency, rate or extent of amniotic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-29T02:18:59Z biological_process owl:Class GO:0034030 biolink:NamedThing ribonucleoside bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside bisphosphate anabolism|ribonucleoside bisphosphate synthesis|ribonucleoside bisphosphate formation|ribonucleoside bisphosphate biosynthesis biological_process owl:Class GO:2000336 biolink:NamedThing negative regulation of endothelial microparticle formation Any process that stops, prevents or reduces the frequency, rate or extent of endothelial microparticle formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of endothelial microparticle generation|negative regulation of endothelial microparticle release mah 2011-01-31T11:20:33Z biological_process owl:Class GO:0120193 biolink:NamedThing tight junction organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a tight junction. A tight junction seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other. tmpzr1t_l9r_go_relaxed.owl occluding junction organization|occluding cell junction organization krc 2018-08-14T23:05:40Z biological_process owl:Class GO:1904238 biolink:NamedThing pericyte cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a pericyte cell. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-15T14:50:13Z biological_process owl:Class GO:0019784 biolink:NamedThing NEDD8-specific protease activity Catalysis of the hydrolysis of NEDD8, a small ubiquitin-related modifier, from previously neddylated substrates. tmpzr1t_l9r_go_relaxed.owl deneddylase activity Reactome:R-HSA-8956040|Reactome:R-HSA-8863723|Reactome:R-HSA-5690808|Reactome:R-HSA-8956045 molecular_function owl:Class GO:0019783 biolink:NamedThing ubiquitin-like protein-specific protease activity Catalysis of the hydrolysis of peptide or isopeptide bonds within small proteins such as ubiquitin or ubiquitin-like proteins (e.g. APG8, ISG15, NEDD8, SUMO), or between the small protein and a larger protein to which it has been conjugated. tmpzr1t_l9r_go_relaxed.owl ubiquitin-like specific protease activity|ubiquitin-like-protein-specific protease activity|small conjugating protein-specific protease activity|ubiquitin-specific protease activity involved in positive regulation of ERAD pathway|ubiquitin-specific protease activity involved in negative regulation of ERAD pathway GO:1904454|GO:1904455 molecular_function owl:Class GO:0002110 biolink:NamedThing cotranscriptional mitochondrial rRNA nucleotide insertion The insertion of one or two non-coded nucleotides during the transcription of a mitochondrial rRNA. Such additions are known to occur in myxomycetes such as Physarum, Didymium, and Stemonitis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070705 biolink:NamedThing RNA nucleotide insertion The modification of an RNA molecule by insertion of one or more nucleotides. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-08T04:48:35Z biological_process owl:Class GO:0035835 biolink:NamedThing indole alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of an indole alkaloid, an alkaloid containing an indole skeleton. tmpzr1t_l9r_go_relaxed.owl indole alkaloid formation|indole alkaloid synthesis|indole alkaloid biosynthesis|indole alkaloid anabolism bf 2011-05-04T03:18:31Z biological_process owl:Class GO:1904447 biolink:NamedThing folate import across plasma membrane The directed movement of folic acid from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl folic acid import across plasma membrane|folate import into cell hal 2015-07-07T15:32:33Z biological_process owl:Class GO:0014893 biolink:NamedThing response to rest involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rest stimulus. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014877 biolink:NamedThing response to muscle inactivity involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle inactivity stimulus. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103039 biolink:NamedThing protein methylthiotransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [ribosomal protein S12] L-aspartate89 + a sulfurated [sulfur carrier] + a reduced electron acceptor = S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 2 H+ + a [ribosomal protein S12] 3-methylthio-L-aspartate89 + an unsulfurated [sulfur carrier] + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:37087|MetaCyc:RXN0-6366|EC:2.8.4.4 molecular_function owl:Class GO:0039664 biolink:NamedThing lysis of host organelle involved in viral entry into host cell The viral-induced lysis of an organelle (endosome, lysosome, or caveosome) that is involved in the uptake of a virus into a host cell. Occurs once the virus is within the organelle, and results in transfer of the viral contents from the organelle compartment into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via endosome membrane lysis|viral entry into host cell via lysis of host organelle membrane|viral penetration via lysis of host organellar membrane|viral membrane-lytic protein VZ:984 bf 2013-08-29T11:30:18Z biological_process owl:Class GO:0097621 biolink:NamedThing monoamine oxidase activity Catalysis of the reaction: RCH2NHR' + H2O + O2 = RCHO + R'NH2 + H2O2. tmpzr1t_l9r_go_relaxed.owl amine:oxygen oxidoreductase (deaminating) activity RHEA:26414|EC:1.4.3.4 Acts on primary amines, and also on some secondary and tertiary amines. It differs from EC:1.4.3.21, primary-amine oxidase as it can oxidize secondary and tertiary amines but not methylamine. pr 2014-07-30T10:23:57Z molecular_function owl:Class GO:0003132 biolink:NamedThing mesodermal-endodermal cell signaling involved in heart induction Any process that mediates the transfer of information from mesodermal cells to endodermal cells that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl mesodermal-endodermal cell signalling involved in heart induction tb 2009-09-22T03:08:52Z biological_process owl:Class GO:0003131 biolink:NamedThing mesodermal-endodermal cell signaling Any process that mediates the transfer of information from mesodermal cells to endodermal cells. tmpzr1t_l9r_go_relaxed.owl mesodermal-endodermal cell signalling tb 2009-09-22T03:07:34Z biological_process owl:Class GO:0042548 biolink:NamedThing regulation of photosynthesis, light reaction Any process that modulates the frequency, rate or extent of the light-dependent reaction of photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010109 biolink:NamedThing regulation of photosynthesis Any process that modulates the frequency, rate or extent of photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043085 biolink:NamedThing positive regulation of catalytic activity Any process that activates or increases the activity of an enzyme. tmpzr1t_l9r_go_relaxed.owl activation of enzyme activity|upregulation of enzyme activity|up-regulation of enzyme activity|upregulation of metalloenzyme activity|up regulation of enzyme activity|activation of metalloenzyme activity|up-regulation of metalloenzyme activity|stimulation of enzyme activity|up regulation of metalloenzyme activity|positive regulation of enzyme activity|stimulation of metalloenzyme activity|positive regulation of metalloenzyme activity GO:0048554 biological_process owl:Class GO:1903795 biolink:NamedThing regulation of inorganic anion transmembrane transport Any process that modulates the frequency, rate or extent of inorganic anion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of inorganic anion membrane transport|regulation of transmembrane inorganic anion transport sl 2015-01-14T21:44:49Z biological_process owl:Class GO:0006432 biolink:NamedThing phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036432 biolink:NamedThing all-trans undecaprenol kinase activity Catalysis of the reaction: ATP + undecaprenol + all-trans-undecaprenyl phosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:23752 bf 2013-09-16T14:21:04Z molecular_function owl:Class GO:0009038 biolink:NamedThing undecaprenol kinase activity Catalysis of the reaction: ATP + undecaprenol = ADP + undecaprenyl phosphate. tmpzr1t_l9r_go_relaxed.owl isoprenoid-alcohol kinase activity|isoprenoid alcohol kinase activity|C55-isoprenoid alcohol kinase activity|ATP:undecaprenol phosphotransferase activity|isoprenoid alcohol phosphokinase activity|isoprenoid alcohol kinase (phosphorylating)|C55-isoprenoid alcohol phosphokinase activity|polyisoprenol kinase activity|C55-isoprenyl alcohol phosphokinase activity EC:2.7.1.66 molecular_function owl:Class GO:0033274 biolink:NamedThing response to vitamin B2 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B2 stimulus. tmpzr1t_l9r_go_relaxed.owl response to riboflavin biological_process owl:Class GO:0043793 biolink:NamedThing beta-ribofuranosylaminobenzene 5'-phosphate synthase activity Catalysis of the reaction: 4-aminobenzoate + 5-phospho-alpha-D-ribose 1-diphosphate = 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + CO2 + diphosphate. tmpzr1t_l9r_go_relaxed.owl beta-RFAP synthase activity MetaCyc:RXN-8124 molecular_function owl:Class GO:0072296 biolink:NamedThing specification of metanephric loop of Henle identity The process in which the loop of Henle of the metanephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl specification of metanephric intermediate tubule identity mah 2010-04-09T04:08:05Z biological_process owl:Class GO:0072293 biolink:NamedThing specification of metanephric nephron tubule identity The process in which the tubules arranged along the proximal/distal axis of the metanephric nephron acquire their identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:58:10Z biological_process owl:Class GO:0010928 biolink:NamedThing regulation of auxin mediated signaling pathway Any process that modulates the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin. tmpzr1t_l9r_go_relaxed.owl regulation of auxin mediated signalling pathway biological_process owl:Class GO:0043219 biolink:NamedThing lateral loop Non-compact myelin located adjacent to the nodes of Ranvier in a myelin segment. These non-compact regions include cytoplasm from the cell responsible for synthesizing the myelin. Lateral loops are found in the paranodal region adjacent to the nodes of Ranvier, while Schmidt-Lantermann clefts are analogous structures found within the compact myelin internode. tmpzr1t_l9r_go_relaxed.owl Schwann cell paranodal termination|oligodendrocyte paranodal termination|paranodal loop NIF_Subcellular:sao1067215520|NIF_Subcellular:sao1354781919 cellular_component owl:Class GO:0046034 biolink:NamedThing ATP metabolic process The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. tmpzr1t_l9r_go_relaxed.owl ATP metabolism biological_process owl:Class GO:0098939 biolink:NamedThing dendritic transport of mitochondrion The directed movement of mitochondria along microtubules in nerve cell dendrites. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034000 biolink:NamedThing chondroitin-sulfate-ABC endolyase activity Catalysis of the endolytic cleavage of beta-1,4-galactosaminic bonds between N-acetylgalactosamine and either D-glucuronic acid or L-iduronic acid to produce a mixture of Delta4-unsaturated oligosaccharides of different sizes that are ultimately degraded to Delta4-unsaturated tetra- and disaccharides. tmpzr1t_l9r_go_relaxed.owl ChS ABC lyase I activity|chondroitin sulfate ABC endoeliminase activity|chondroitin ABC eliminase activity|chondroitin sulfate ABC endolyase activity|ChS ABC lyase activity|chondroitinase activity|chondroitinase ABC activity|chondroitin sulfate ABC lyase activity MetaCyc:4.2.2.20-RXN|EC:4.2.2.20 molecular_function owl:Class GO:0052035 biolink:NamedThing positive regulation by symbiont of host inflammatory response Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the inflammatory response of the host organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by symbiont of host inflammatory response|stimulation by symbiont of host inflammatory response|up-regulation by symbiont of host inflammatory response|positive regulation by organism of inflammatory response of other organism involved in symbiotic interaction|up regulation by symbiont of host inflammatory response|activation by symbiont of host inflammatory response GO:0052259 biological_process owl:Class GO:0044416 biolink:NamedThing induction by symbiont of host defense response The activation by an organism of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by symbiont of host defense response|positive regulation by symbiont of host defense response|positive regulation by organism of defense response of other organism involved in symbiotic interaction|up regulation by symbiont of host defense response|up-regulation by symbiont of host defense response|induction by organism of defense response of other organism involved in symbiotic interaction|activation by symbiont of host defense response|stimulation by symbiont of host defense response|activation of host defense response GO:0052251|GO:0052509|GO:0052510 biological_process owl:Class GO:0051291 biolink:NamedThing protein heterooligomerization The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. tmpzr1t_l9r_go_relaxed.owl protein heterooligomer biosynthetic process|protein heterooligomer formation|protein heterooligomer biosynthesis|protein heterooligomer assembly biological_process owl:Class GO:0103014 biolink:NamedThing beta-keto ester reductase activity Catalysis of the reaction: ethyl-(2R)-methyl-(3S)-hydroxybutanoate + NADP = ethyl-2-methylacetoacetate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-1941 molecular_function owl:Class GO:0008344 biolink:NamedThing adult locomotory behavior Locomotory behavior in a fully developed and mature organism. tmpzr1t_l9r_go_relaxed.owl adult locomotory behaviour See also the biological process term 'locomotory behavior ; GO:0007626'. biological_process owl:Class GO:0045548 biolink:NamedThing phenylalanine ammonia-lyase activity Catalysis of the reaction: L-phenylalanine = NH(4)(+) + trans-cinnamate. tmpzr1t_l9r_go_relaxed.owl phe ammonia-lyase activity|phenylalanine ammonium-lyase activity|L-phenylalanine ammonia-lyase activity|PAL activity|phenylalanine deaminase activity RHEA:21384|EC:4.3.1.25|EC:4.3.1.24 molecular_function owl:Class GO:0050099 biolink:NamedThing methylglutamate dehydrogenase activity Catalysis of the reaction: N-methyl-L-glutamate + A + H(2)O = L-glutamate + AH(2) + formaldehyde. tmpzr1t_l9r_go_relaxed.owl N-methyl-L-glutamate:(acceptor) oxidoreductase (demethylating)|N-methyl-L-glutamate:acceptor oxidoreductase (demethylating)|N-methylglutamate dehydrogenase activity EC:1.5.99.5|RHEA:22572|KEGG_REACTION:R00609|MetaCyc:METHYLGUTAMATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0006293 biolink:NamedThing nucleotide-excision repair, preincision complex stabilization The stabilization of the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage as well as the unwound DNA. The stabilization of the protein-DNA complex ensures proper positioning of the preincision complex before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030964 biolink:NamedThing NADH dehydrogenase complex An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. It catalyzes the transfer of a pair of electrons from NADH to a quinone. tmpzr1t_l9r_go_relaxed.owl NADH dehydrogenase complex (plastoquinone)|Complex I|NADH:plastoquinone reductase complex|NADH dehydrogenase complex (quinone)|plastid NADH dehydrogenase complex (plastoquinone)|NADH dehydrogenase complex (ubiquinone) Wikipedia:NADH_dehydrogenase Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'NADH dehydrogenase (quinone) activity ; GO:0050136'. GO:0031677|GO:0045280|GO:0031678|GO:0031675|GO:0030025|GO:0030966 cellular_component owl:Class GO:0007494 biolink:NamedThing midgut development The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018531 biolink:NamedThing (S)-6-hydroxynicotine oxidase activity Catalysis of the reaction: (S)-6-hydroxynicotine + H(2)O + O(2) = 6-hydroxypseudooxynicotine + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl 6-hydroxy-L-nicotine oxidase activity|L-6-hydroxynicotine oxidase activity|6-hydroxy-L-nicotine:oxygen oxidoreductase activity|(S)-6-hydroxynicotine:oxygen oxidoreductase activity RHEA:11880|UM-BBD_reactionID:r0478|MetaCyc:S-6-HYDROXYNICOTINE-OXIDASE-RXN|EC:1.5.3.5|KEGG_REACTION:R03202 molecular_function owl:Class GO:0019116 biolink:NamedThing hydroxy-nicotine oxidase activity Catalysis of the reaction: 6-hydroxynicotine + H2O + O2 = 1-(6-hydroxypyrid-3-yl)-4-(methylamino)butan-1-one + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl EC:1.5.3.6 molecular_function owl:Class GO:1900686 biolink:NamedThing regulation of gerfelin biosynthetic process Any process that modulates the frequency, rate or extent of gerfelin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of gerfelin synthesis|regulation of gerfelin biosynthesis|regulation of gerfelin anabolism|regulation of gerfelin formation di 2012-05-22T04:49:44Z biological_process owl:Class GO:1902545 biolink:NamedThing negative regulation of DNA N-glycosylase activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA N-glycosylase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA N-glycosylase activity|down-regulation of DNA glycosylase activity|inhibition of DNA N-glycosylase activity|inhibition of endonuclease VIII activity|inhibition of DNA glycosylase activity|down regulation of endonuclease VIII activity|negative regulation of DNA glycosylase activity|down-regulation of endonuclease VIII activity|downregulation of endonuclease VIII activity|downregulation of DNA N-glycosylase activity|down regulation of DNA glycosylase activity|downregulation of DNA glycosylase activity|negative regulation of endonuclease VIII activity|down-regulation of DNA N-glycosylase activity rph 2013-12-04T14:18:03Z biological_process owl:Class GO:0002860 biolink:NamedThing positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target. tmpzr1t_l9r_go_relaxed.owl stimulation of natural killer cell mediated cytotoxicity directed against tumor cell target|up-regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|up regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|activation of natural killer cell mediated cytotoxicity directed against tumor cell target|upregulation of natural killer cell mediated cytotoxicity directed against tumor cell target biological_process owl:Class GO:0033089 biolink:NamedThing positive regulation of T cell differentiation in thymus Any process that activates or increases the frequency, rate or extent of T cell differentiation in the thymus. tmpzr1t_l9r_go_relaxed.owl positive regulation of thymocyte cell differentiation|positive regulation of thymic T cell differentiation|positive regulation of T cell development in thymus|positive regulation of thymocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0046950 biolink:NamedThing cellular ketone body metabolic process The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism. tmpzr1t_l9r_go_relaxed.owl cellular ketone body metabolism biological_process owl:Class GO:0008834 biolink:NamedThing di-trans,poly-cis-decaprenylcistransferase activity Catalysis of the reaction: di-trans-poly-cis-decaprenyl diphosphate + isopentenyl diphosphate = diphosphate + di-trans-poly-cis-undecaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl di-trans,poly-cis-decaprenyl-diphosphate:isopentenyl-diphosphate undecaprenylcistransferase activity|undecaprenyl diphosphate synthase activity|di-trans,poly-cis-undecaprenyl-diphosphate synthase activity|UPP synthetase activity|undecaprenyl pyrophosphate synthetase activity|undecaprenyl diphosphate synthetase activity|undecaprenyl pyrophosphate synthase activity|undecaprenyl-diphosphate synthase activity|bactoprenyl-diphosphate synthase activity RHEA:27551|EC:2.5.1.31|MetaCyc:RXN-8999 molecular_function owl:Class GO:1900754 biolink:NamedThing 4-hydroxyphenylacetate transport The directed movement of a 4-hydroxyphenylacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 2-(4-hydroxyphenyl)ethanoate transport|4-hydroxybenzeneacetate transport|(p-hydroxyphenyl)acetate transport|(4-hydroxyphenyl)acetate transport jl 2012-05-29T02:59:02Z biological_process owl:Class GO:0031350 biolink:NamedThing intrinsic component of plastid membrane The component of the plastid membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to plastid membrane cellular_component owl:Class GO:0034152 biolink:NamedThing negative regulation of toll-like receptor 6 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 6 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 6 signalling pathway|negative regulation of TLR6 signaling pathway biological_process owl:Class GO:0034151 biolink:NamedThing regulation of toll-like receptor 6 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 6 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 6 signalling pathway|regulation of TLR6 signaling pathway biological_process owl:Class GO:0090356 biolink:NamedThing negative regulation of auxin metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl negative regulation of auxin metabolism tb 2010-06-29T01:51:18Z biological_process owl:Class GO:2000690 biolink:NamedThing regulation of cardiac muscle cell myoblast differentiation Any process that modulates the frequency, rate or extent of cardiac muscle cell myoblast differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of myocardial precursor cell differentiation|regulation of cardiac myoblast differentiation yaf 2011-05-25T09:08:01Z biological_process owl:Class GO:0034229 biolink:NamedThing ethanolamine transport The directed movement of ethanolamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ethanolamine (2-aminoethanol, monoethanolamine) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids, such as phosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl monoethanolamine transport|2-aminoethanol transport biological_process owl:Class GO:0003308 biolink:NamedThing negative regulation of Wnt signaling pathway involved in heart development Any process that decreases the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt-activated signaling pathway involved in heart development|negative regulation of Wnt receptor signalling pathway involved in heart development|negative regulation of Wnt receptor signaling pathway involved in heart development dph 2009-10-22T12:36:11Z biological_process owl:Class GO:0047900 biolink:NamedThing formate kinase activity Catalysis of the reaction: ATP + formate = ADP + formyl phosphate + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:formate phosphotransferase activity MetaCyc:FORMATE-KINASE-RXN|KEGG_REACTION:R00518|EC:2.7.2.6|RHEA:16009 molecular_function owl:Class GO:0140434 biolink:NamedThing positive regulation of protein localization to meiotic spindle pole body Any process that increases the frequency, rate or extent of protein localization to a meiotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl pg 2020-02-24T13:27:01Z biological_process owl:Class GO:0050061 biolink:NamedThing long-chain-aldehyde dehydrogenase activity Catalysis of the reaction: a long-chain aldehyde + NAD+ = a long-chain carboxylate + NADH + H+. A long-chain aldehyde is one with more than 12 carbons. tmpzr1t_l9r_go_relaxed.owl fatty aldehyde:NAD+ oxidoreductase activity|long-chain aliphatic aldehyde dehydrogenase activity|long-chain fatty aldehyde dehydrogenase activity|long-chain-aldehyde:NAD+ oxidoreductase activity RHEA:10652|EC:1.2.1.48|UM-BBD_reactionID:r1404|MetaCyc:LONG-CHAIN-ALDEHYDE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0008098 biolink:NamedThing 5S rRNA primary transcript binding Binding to an unprocessed 5S ribosomal RNA transcript. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008097 biolink:NamedThing 5S rRNA binding Binding to a 5S ribosomal RNA, the smallest RNA constituent of a ribosome. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140026 biolink:NamedThing contractile vacuole dissociation from plasma membrane The dissociation of the contractile vacuole after discharge, from the plasma membrane. This interaction is mediated by detethering factors that initiate the process of tubulation and fragmentation of the empty contractile vacuole bladder, which is then reincorporated into the CV network. tmpzr1t_l9r_go_relaxed.owl contractile vacuole detethering from plasma membrane https://github.com/geneontology/go-ontology/issues/13407 pg 2017-05-02T10:16:12Z biological_process owl:Class GO:0021906 biolink:NamedThing hindbrain-spinal cord boundary formation The process whose specific outcome is the formation of the hindbrain-spinal cord boundary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990871 biolink:NamedThing Vma12-Vma22 assembly complex A protein complex that is involved in the assembly of the V-ATPase complex. In the budding yeast Saccharomyces cerevisiae, this complex consists of Vma12p and Vma22p. tmpzr1t_l9r_go_relaxed.owl rb 2015-09-28T19:03:28Z cellular_component owl:Class GO:0021737 biolink:NamedThing emboliform nucleus development The process whose specific outcome is the progression of the emboliform nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048438 biolink:NamedThing floral whorl development The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant. tmpzr1t_l9r_go_relaxed.owl collective phyllome structure development Consider instead annotating to one of the more specific child terms, or to 'floral organ development ; GO:0048438' or one of its child terms. GO:0048413 biological_process owl:Class GO:0045008 biolink:NamedThing depyrimidination The disruption of the bond between the sugar in the backbone and the C or T base, causing the base to be removed and leaving a depyrimidinated sugar. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002616 biolink:NamedThing regulation of macrophage antigen processing and presentation Any process that modulates the frequency, rate, or extent of macrophage antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070279 biolink:NamedThing vitamin B6 binding Binding to a vitamin B6 compound: pyridoxal, pyridoxamine, pyridoxine, or the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019842 biolink:NamedThing vitamin binding Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010124 biolink:NamedThing phenylacetate catabolic process The chemical reactions and pathways resulting in the breakdown of phenylacetate. tmpzr1t_l9r_go_relaxed.owl phenylacetate breakdown|phenylacetate catabolism|phenylacetate degradation MetaCyc:PWY0-321 biological_process owl:Class GO:0034589 biolink:NamedThing hydroxyproline transport The directed movement of hydroxyproline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyproline transport|L-hydroxyproline transport biological_process owl:Class GO:1902486 biolink:NamedThing protein localization to growing cell tip A process in which a protein is transported to, or maintained in, a location within a growing cell tip. tmpzr1t_l9r_go_relaxed.owl protein localization in growing cell tip|protein localisation in growing cell tip|protein localisation to growing cell tip mah 2013-11-12T16:38:13Z biological_process owl:Class GO:1904492 biolink:NamedThing Ac-Asp-Glu binding Binding to Ac-Asp-Glu. tmpzr1t_l9r_go_relaxed.owl hal 2015-07-20T10:32:49Z molecular_function owl:Class GO:0018833 biolink:NamedThing DDT-dehydrochlorinase activity Catalysis of the reaction: 1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane = 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene + chloride + H(+). tmpzr1t_l9r_go_relaxed.owl DDT-as|DDTase activity|DDT-ase activity|DDT dehydrochlorinase activity|1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane chloride-lyase activity|1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane chloride-lyase [1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene-forming] MetaCyc:DDT-DEHYDROCHLORINASE-RXN|KEGG_REACTION:R04522|UM-BBD_reactionID:r0439|RHEA:19217|EC:4.5.1.1 molecular_function owl:Class GO:0016848 biolink:NamedThing carbon-halide lyase activity Catalysis of the breakage of a bond between carbon and any halogen atom. tmpzr1t_l9r_go_relaxed.owl EC:4.5.-.- molecular_function owl:Class GO:1900837 biolink:NamedThing regulation of fumigaclavine C biosynthetic process Any process that modulates the frequency, rate or extent of fumigaclavine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of fumigaclavine C anabolism|regulation of fumigaclavine C synthesis|regulation of fumigaclavine C formation|regulation of fumigaclavine C biosynthesis di 2012-06-07T09:36:22Z biological_process owl:Class GO:0098502 biolink:NamedThing DNA dephosphorylation The process of removing one or more phosphate groups from a DNA molecule. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-18T14:50:16Z biological_process owl:Class GO:0039628 biolink:NamedThing T=169 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=169 symmetry. T=169 icosahedral capsid is composed of 12 pentameric and 1680 hexameric capsomeres for a total of 10140 capsid proteins. tmpzr1t_l9r_go_relaxed.owl T=169 icosahedral capsid bf 2012-08-03T16:27:55Z cellular_component owl:Class GO:0014706 biolink:NamedThing striated muscle tissue development The process whose specific outcome is the progression of a striated muscle over time, from its formation to the mature structure. Striated muscle contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle. Skeletal muscle myoblasts fuse to form myotubes and eventually multinucleated muscle fibers. The fusion of cardiac cells is very rare and can only form binucleate cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120190 biolink:NamedThing negative regulation of bile acid secretion Any process that stops, prevents or reduces the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-16T22:38:34Z biological_process owl:Class GO:0021540 biolink:NamedThing corpus callosum morphogenesis The process in which the anatomical structures of the corpus callosum are generated and organized. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901525 biolink:NamedThing negative regulation of mitophagy Any process that stops, prevents or reduces the frequency, rate or extent of mitophagy. tmpzr1t_l9r_go_relaxed.owl negative regulation of macromitophagy|down regulation of macromitophagy|down-regulation of macromitophagy|downregulation of macromitophagy|inhibition of macromitophagy krc 2012-10-22T16:56:49Z biological_process owl:Class GO:1901524 biolink:NamedThing regulation of mitophagy Any process that modulates the frequency, rate or extent of macromitophagy. tmpzr1t_l9r_go_relaxed.owl regulation of macromitophagy krc 2012-10-22T16:56:45Z biological_process owl:Class GO:1902370 biolink:NamedThing regulation of tRNA catabolic process Any process that modulates the frequency, rate or extent of tRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tRNA degradation|regulation of tRNA catabolism|regulation of tRNA breakdown bf 2013-08-22T15:08:12Z biological_process owl:Class GO:1903326 biolink:NamedThing regulation of tRNA metabolic process Any process that modulates the frequency, rate or extent of tRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tRNA metabolism vw 2014-08-18T13:08:50Z biological_process owl:Class GO:0048683 biolink:NamedThing regulation of collateral sprouting of intact axon in response to injury Any process that modulates the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015532 biolink:NamedThing alpha-ketoglutarate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alpha-ketoglutarate(out) + H+(out) = alpha-ketoglutarate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate:hydrogen symporter activity|alpha-ketoglutarate:hydrogen symporter activity|2-oxoglutarate:proton symporter activity molecular_function owl:Class GO:0009638 biolink:NamedThing phototropism The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phototropism biological_process owl:Class GO:0009606 biolink:NamedThing tropism The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Tropism biological_process owl:Class GO:0061440 biolink:NamedThing kidney vasculature development The process whose specific outcome is the progression of the vasculature of the kidney over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-08T12:39:09Z biological_process owl:Class GO:0061437 biolink:NamedThing renal system vasculature development The process whose specific outcome is the progression of vasculature of the renal system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-08T12:16:24Z biological_process owl:Class GO:0070088 biolink:NamedThing PHA granule An inclusion body located in the cytoplasm that consists of polyhydroxyalkanoate (PHA) molecules and associated proteins, surrounded by a phospholipid monolayer; the proteins include PHA synthase, PHA depolymerase and 3HB-oligomer hydroxylase, phasins (PhaPs), which are thought to be the major structural proteins of the membrane surrounding the inclusion, and the regulator of phasin expression PhaR. tmpzr1t_l9r_go_relaxed.owl PHB granule|polyhydroxyalkanoate granule cellular_component owl:Class GO:0098810 biolink:NamedThing neurotransmitter reuptake The directed movement of neurotransmitter molecules from the extrasynaptic space into the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017108 biolink:NamedThing 5'-flap endonuclease activity Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis. tmpzr1t_l9r_go_relaxed.owl 5' flap endonuclease activity Reactome:R-HSA-174446|Reactome:R-HSA-5687664|Reactome:R-HSA-69152|Reactome:R-HSA-110363|Reactome:R-HSA-5651782|Reactome:R-HSA-174441 molecular_function owl:Class GO:0048256 biolink:NamedThing flap endonuclease activity Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905620 biolink:NamedThing negative regulation of alpha-(1->3)-fucosyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of alpha-(1->3)-fucosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of alpha-1,3-fucosyltransferase activity|negative regulation of alpha-(1,3)-fucosyltransferase activity|downregulation of alpha-1,3-fucosyltransferase activity|downregulation of alpha(1,3)-fucosyltransferase activity|down regulation of alpha-(1->3)-fucosyltransferase activity|down regulation of alpha(1,3)-fucosyltransferase activity|inhibition of alpha-(1,3)-fucosyltransferase activity|down-regulation of alpha-(1->3)-fucosyltransferase activity|down-regulation of alpha(1,3)-fucosyltransferase activity|down-regulation of alpha-1,3-fucosyltransferase activity|down regulation of alpha-(1,3)-fucosyltransferase activity|inhibition of alpha-(1->3)-fucosyltransferase activity|inhibition of alpha-1,3-fucosyltransferase activity|down regulation of alpha-1,3-fucosyltransferase activity|downregulation of alpha-(1->3)-fucosyltransferase activity|inhibition of alpha(1,3)-fucosyltransferase activity|down-regulation of alpha-(1,3)-fucosyltransferase activity|downregulation of alpha-(1,3)-fucosyltransferase activity|negative regulation of alpha(1,3)-fucosyltransferase activity rz 2016-10-28T14:39:45Z biological_process owl:Class GO:2000958 biolink:NamedThing negative regulation of cyclodextrin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cyclodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cyclodextrin catabolism tt 2011-08-01T02:24:02Z biological_process owl:Class GO:0036109 biolink:NamedThing alpha-linolenic acid metabolic process The chemical reactions and pathways involving alpha-linolenic acid, an unsaturated omega-6 fatty acid that has the molecular formula C18H32O2. tmpzr1t_l9r_go_relaxed.owl alpha-linolenic acid metabolism|ALA metabolism Wikipedia:Linoleic_acid bf 2012-02-15T10:16:42Z biological_process owl:Class GO:0001676 biolink:NamedThing long-chain fatty acid metabolic process The chemical reactions and pathways involving long-chain fatty acids, A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acid metabolism biological_process owl:Class GO:0032619 biolink:NamedThing interleukin-16 production The appearance of interleukin-16 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-16 biosynthetic process|interleukin-16 secretion|LCF production|pro-interleukin-16 production|IL-16 production GO:0042234|GO:0072614 biological_process owl:Class GO:0009449 biolink:NamedThing gamma-aminobutyric acid biosynthetic process The chemical reactions and pathways resulting in the formation of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. tmpzr1t_l9r_go_relaxed.owl 4-aminobutanoate biosynthesis|GABA biosynthesis|gamma-aminobutyric acid biosynthesis|4-aminobutyrate biosynthesis|gamma-aminobutyric acid synthesis|4-aminobutyrate biosynthetic process|gamma-aminobutyric acid formation|GABA biosynthetic process|4-aminobutanoate biosynthetic process|gamma-aminobutyric acid anabolism See also the biological process term 'neurotransmitter biosynthetic process ; GO:0042136'. biological_process owl:Class GO:0009448 biolink:NamedThing gamma-aminobutyric acid metabolic process The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. tmpzr1t_l9r_go_relaxed.owl GABA metabolic process|gamma-aminobutyric acid metabolism|4-aminobutyrate metabolism|4-aminobutanoate metabolism|GABA metabolism|4-aminobutyrate metabolic process|4-aminobutanoate metabolic process See also the biological process term 'neurotransmitter metabolic process ; GO:0042133'. biological_process owl:Class GO:0000144 biolink:NamedThing cellular bud neck septin ring A ring-shaped structure that forms at the site of cytokinesis in the bud neck of a budding cell; composed of members of the conserved family of filament forming proteins called septins as well as septin-associated proteins. In S. cerevisiae, this structure forms at the time of bud emergence and the septins show a high rate of exchange. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090464 biolink:NamedThing histidine homeostasis Any process involved in the maintenance of an internal steady state of histidine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0060604 biolink:NamedThing mammary gland duct cavitation Creation of the central hole of the mammary gland duct by the hollowing out of a solid rod. tmpzr1t_l9r_go_relaxed.owl milk duct cavitation dph 2009-05-15T09:34:07Z biological_process owl:Class GO:0006623 biolink:NamedThing protein targeting to vacuole The process of directing proteins towards the vacuole, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl protein vacuolar targeting|protein-vacuolar targeting|vacuolar protein sorting|protein-vacuole targeting biological_process owl:Class GO:0042437 biolink:NamedThing indoleacetic acid catabolic process The chemical reactions and pathways resulting in the breakdown of indole-3-acetic acid, a compound which functions as a growth regulator in plants. tmpzr1t_l9r_go_relaxed.owl IAA catabolic process|indole acetic acid catabolism|indole acetic acid catabolic process|indoleacetic acid degradation|indoleacetic acid catabolism|indoleacetic acid breakdown biological_process owl:Class GO:1902754 biolink:NamedThing positive regulation of renal amino acid absorption Any process that activates or increases the frequency, rate or extent of renal amino acid absorption. tmpzr1t_l9r_go_relaxed.owl up-regulation of renal amino acid absorption|up regulation of renal amino acid absorption|upregulation of renal amino acid absorption|activation of renal amino acid absorption hjd 2014-03-05T15:44:07Z biological_process owl:Class GO:1903018 biolink:NamedThing regulation of glycoprotein metabolic process Any process that modulates the frequency, rate or extent of glycoprotein metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glycoprotein metabolism human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) and thus the metabolism of glycoproteins, demonstrated in Figure 4A PMID:23544079, (IDA), the negative regulation term would be applied to this protein rl 2014-05-14T18:44:19Z biological_process owl:Class GO:0140632 biolink:NamedThing inflammasome complex assembly The aggregation, arrangement and bonding together of a set of components to form an inflammasome complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21092 pg 2021-04-09T11:11:41Z biological_process owl:Class GO:0000126 biolink:NamedThing transcription factor TFIIIB complex A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIB contains the TATA-binding protein (TBP) and two Pol III-specific proteins, B'' and BRF. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033574 biolink:NamedThing response to testosterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus. tmpzr1t_l9r_go_relaxed.owl response to testosterone stimulus biological_process owl:Class GO:1905552 biolink:NamedThing positive regulation of protein localization to endoplasmic reticulum Any process that activates or increases the frequency, rate or extent of protein localization to endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localization to endoplasmic reticulum|up-regulation of protein localization in ER|positive regulation of protein localisation in endoplasmic reticulum|up-regulation of protein localisation in endoplasmic reticulum|activation of protein localization in ER|activation of protein localization to endoplasmic reticulum|upregulation of protein localization to endoplasmic reticulum|up regulation of protein localization in ER|up-regulation of protein localization in endoplasmic reticulum|positive regulation of protein localization in ER|up regulation of protein localization in endoplasmic reticulum|upregulation of protein localization in ER|upregulation of protein localization in endoplasmic reticulum|positive regulation of protein localization in endoplasmic reticulum|up regulation of protein localization to endoplasmic reticulum|up regulation of protein localisation in endoplasmic reticulum|activation of protein localisation in endoplasmic reticulum|upregulation of protein localisation in endoplasmic reticulum|activation of protein localization in endoplasmic reticulum rz 2016-10-12T11:37:16Z biological_process owl:Class GO:0102850 biolink:NamedThing 1-18:1-2-16:0-phosphatidylglycerol omega-6 desaturase activity Catalysis of the reaction: 1-[(9Z)-octadec-9-enoyl]-2-hexadecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-) + O2 + a reduced electron acceptor <=> 1-18:2-2-16:0-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:46376|EC:1.14.19.23|MetaCyc:RXN-8316 molecular_function owl:Class GO:0046877 biolink:NamedThing regulation of saliva secretion Any process that modulates the frequency, rate or extent of the regulated release of saliva from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061503 biolink:NamedThing tRNA threonylcarbamoyladenosine dehydratase Catalysis of the ATP-dependent dehydration of t6A to form cyclic t6A. tmpzr1t_l9r_go_relaxed.owl dph 2013-01-22T14:22:14Z molecular_function owl:Class GO:0014806 biolink:NamedThing smooth muscle hyperplasia A process, occurring in smooth muscle, in which there is an increase in cell number by cell division, often leading to an increase in the size of an organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106105 biolink:NamedThing Ala-tRNA(Thr) hydrolase activity Catalysis of the hydrolysis of misacylated ala-tRNA(thr). tmpzr1t_l9r_go_relaxed.owl L-alanyl-tRNA(Thr) deacylase hjd 2018-03-14T22:03:29Z molecular_function owl:Class GO:0070352 biolink:NamedThing positive regulation of white fat cell proliferation Any process that activates or increases the rate or extent of white fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of white fat cell proliferation|positive regulation of white adipocyte proliferation|positive regulation of white adipose cell proliferation|activation of white fat cell proliferation|upregulation of white fat cell proliferation|up-regulation of white fat cell proliferation|stimulation of white fat cell proliferation biological_process owl:Class GO:0097163 biolink:NamedThing sulfur carrier activity Covalently binding to sulfur and delivering it to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14455 pr 2011-09-27T10:15:41Z molecular_function owl:Class GO:0009787 biolink:NamedThing regulation of abscisic acid-activated signaling pathway Any process that modulates the frequency, rate or extent of abscisic acid (ABA) signaling. tmpzr1t_l9r_go_relaxed.owl regulation of abscisic acid mediated signalling|regulation of abscisic acid mediated signaling pathway biological_process owl:Class GO:0046984 biolink:NamedThing regulation of hemoglobin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. tmpzr1t_l9r_go_relaxed.owl regulation of haemoglobin biosynthesis|regulation of hemoglobin biosynthesis|regulation of hemoglobin synthesis|regulation of hemoglobin formation|regulation of hemoglobin anabolism|regulation of haemoglobin biosynthetic process biological_process owl:Class GO:2000112 biolink:NamedThing regulation of cellular macromolecule biosynthetic process Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellular macromolecule biosynthesis|regulation of cellular biopolymer biosynthetic process|regulation of cellular macromolecule anabolism|regulation of cellular macromolecule synthesis|regulation of cellular macromolecule formation tb 2010-09-15T08:55:45Z biological_process owl:Class GO:0051424 biolink:NamedThing corticotropin-releasing hormone binding Binding to corticotropin-releasing hormone, a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland. tmpzr1t_l9r_go_relaxed.owl corticotropin-releasing factor binding|CRH binding|CRF binding|corticoliberin binding GO:0017047 molecular_function owl:Class GO:0016278 biolink:NamedThing lysine N-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6805740|Reactome:R-HSA-6805730|Reactome:R-HSA-6805755|Reactome:R-HSA-3222237 molecular_function owl:Class GO:0035570 biolink:NamedThing N-terminal peptidyl-serine methylation The methylation of the N-terminal serine of proteins. tmpzr1t_l9r_go_relaxed.owl bf 2010-08-06T01:58:11Z biological_process owl:Class GO:1901440 biolink:NamedThing poly(hydroxyalkanoate) metabolic process The chemical reactions and pathways involving poly(hydroxyalkanoate). tmpzr1t_l9r_go_relaxed.owl poly(hydroxyalkanoate) metabolism tt 2012-10-02T01:47:26Z biological_process owl:Class GO:1901493 biolink:NamedThing response to decalin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a decalin stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T13:41:09Z biological_process owl:Class GO:0042657 biolink:NamedThing MHC class II protein binding, via lateral surface Binding to the lateral surface of major histocompatibility complex class II molecules. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex class II protein binding, via lateral surface molecular_function owl:Class GO:0042289 biolink:NamedThing MHC class II protein binding Binding to a major histocompatibility complex class II molecule; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex class II binding|major histocompatibility complex class II ligand Note that this term does not include binding to the antigen peptide bound to the MHC protein. Consider also annotating to the molecular function term 'peptide antigen binding ; GO:0042605' or one of its children. molecular_function owl:Class GO:1990451 biolink:NamedThing cellular stress response to acidic pH Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in the homeostasis of organismal or cellular pH (with pH < 7). pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl cellular stress response to acidity An example of this is NOX1 in human (Q9Y5S8) in PMID:10615049. jl 2014-08-06T14:06:58Z biological_process owl:Class GO:1990135 biolink:NamedThing flavonoid sulfotransferase activity Catalysis of the reaction: a flavonoid + 3'-phosphoadenosine-5'-phosphosulfate = sulfated flavonoid + adenosine-3',5'-diphosphate. This reaction is the transfer of a sulfate group to the hydroxyl group of a flavonoid acceptor, producing the sulfated flavonoid derivative. tmpzr1t_l9r_go_relaxed.owl tb 2013-06-28T22:07:27Z molecular_function owl:Class GO:0050271 biolink:NamedThing S-alkylcysteine lyase activity Catalysis of the reaction: an S-alkyl-L-cysteine + H2O = an alkyl thiol + NH3 + pyruvate. tmpzr1t_l9r_go_relaxed.owl alkyl cysteine lyase activity|S-alkyl-L-cysteinase activity|alkylcysteine lyase activity|S-alkyl-L-cysteine lyase activity|S-alkyl-L-cysteine sulfoxide lyase activity|S-alkyl-L-cysteine alkylthiol-lyase (deaminating) activity|S-alkyl-L-cysteine alkylthiol-lyase (deaminating; pyruvate-forming)|S-alkylcysteinase activity RHEA:22424|MetaCyc:S-ALKYLCYSTEINE-LYASE-RXN|EC:4.4.1.6 molecular_function owl:Class GO:0034407 biolink:NamedThing cell wall (1->3)-beta-D-glucan metabolic process The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall 1,3-beta-D-glucan metabolic process|cell wall 1,3-beta-glucan metabolism|cell wall beta-1,3 glucan metabolic process|cell wall 1,3-beta-glucan metabolic process|cell wall beta-1,3 glucan metabolism biological_process owl:Class GO:0035134 biolink:NamedThing post-embryonic dorsal fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of a fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035142 biolink:NamedThing dorsal fin morphogenesis The process in which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035160 biolink:NamedThing maintenance of epithelial integrity, open tracheal system Ensuring that tracheal tubes in an open tracheal system maintain their epithelial structure during the cell shape changes and movements that occur during the branching process. tmpzr1t_l9r_go_relaxed.owl maintenance of tracheal epithelial integrity biological_process owl:Class GO:0035152 biolink:NamedThing regulation of tube architecture, open tracheal system Ensuring that tracheal cells form and maintain tubular structures with the correct size and shape for their position in the network. This is essential for efficient flow of gases through the tracheal network. tmpzr1t_l9r_go_relaxed.owl regulation of tracheal tube architecture biological_process owl:Class GO:0006635 biolink:NamedThing fatty acid beta-oxidation A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030753 biolink:NamedThing 8-hydroxyfuranocoumarin 8-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + xanthotoxol = S-adenosyl-L-homocysteine + xanthotoxin. Xanthotoxol is also known as 8-hydroxyfuranocoumarin and xanthotoxin as 8-methoxyfuranocoumarin. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:8-hydroxyfuranocoumarin 8-O-methyltransferase activity|S-adenosyl-L-methionine:8-hydroxyfurocoumarin 8-O-methyltransferase activity|xanthotoxol 8-O-methyltransferase activity|furanocoumarin 8-O-methyl-transferase activity|furanocoumarin 8-methyltransferase activity|xanthotoxol methyltransferase activity|xanthotoxol O-methyltransferase activity|XMT activity|S-adenosyl-L-methionine:xanthotoxol O-methyltransferase activity EC:2.1.1.70|KEGG_REACTION:R02982 GO:0030765 molecular_function owl:Class GO:0097542 biolink:NamedThing ciliary tip Part of the cilium where the axoneme ends. The ciliary tip has been implicated in ciliary assembly and disassembly, as well as signal transduction. tmpzr1t_l9r_go_relaxed.owl cilium tip|cilial tip|flagellum tip|flagellar tip Note that cilia and eukaryotic flagella are deemed to be equivalent. pr 2013-12-12T11:12:22Z cellular_component owl:Class GO:1901602 biolink:NamedThing dethiobiotin binding Binding to dethiobiotin. tmpzr1t_l9r_go_relaxed.owl al 2012-11-08T14:09:14Z molecular_function owl:Class GO:1904792 biolink:NamedThing positive regulation of shelterin complex assembly Any process that activates or increases the frequency, rate or extent of shelterin complex assembly. tmpzr1t_l9r_go_relaxed.owl activation of Pot1-Tpz1 complex assembly|up regulation of Pot1 complex assembly|upregulation of telosome assembly|up regulation of Pot1-Tpz1 complex assembly|upregulation of shelterin complex formation|positive regulation of shelterin complex formation|up regulation of shelterin complex formation|up regulation of telosome assembly|up-regulation of telosome assembly|up-regulation of Pot1-Tpz1 complex assembly|activation of shelterin complex formation|activation of telosome assembly|positive regulation of Pot1-Tpz1 complex assembly|up-regulation of Pot1 complex assembly|activation of Pot1 complex assembly|positive regulation of Pot1 complex assembly|up-regulation of shelterin complex formation|upregulation of Pot1-Tpz1 complex assembly|positive regulation of telosome assembly|upregulation of Pot1 complex assembly nc 2015-11-06T16:13:18Z biological_process owl:Class GO:0050356 biolink:NamedThing tropine dehydrogenase activity Catalysis of the reaction: NADP(+) + tropine = H(+) + NADPH + tropinone. tmpzr1t_l9r_go_relaxed.owl tropine:NADP+ 3alpha-oxidoreductase activity MetaCyc:TROPINE-DEHYDROGENASE-RXN|RHEA:18357|EC:1.1.1.206|KEGG_REACTION:R02832 molecular_function owl:Class GO:0008269 biolink:NamedThing JAK pathway signal transduction adaptor activity The binding activity of a molecule that brings together two molecules of the JAK signal transduction pathway, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035591 biolink:NamedThing signaling adaptor activity The binding activity of a molecule that brings together two or more molecules in a signaling pathway, permitting those molecules to function in a coordinated way. Adaptor molecules themselves do not have catalytic activity. tmpzr1t_l9r_go_relaxed.owl signaling scaffold activity|signalling adaptor activity https://github.com/geneontology/go-ontology/issues/19050 A signaling adaptor can bring together both protein and non-protein molecules within a signaling pathway. Scaffold proteins act in at least four ways: tethering signaling components, localizing these components to specific areas of the cell, regulating signal transduction by coordinating positive and negative feedback signals, and insulating correct signaling proteins from competing proteins (PMID:19104498). bf 2010-11-05T11:22:01Z molecular_function owl:Class GO:0071387 biolink:NamedThing cellular response to cortisol stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions. tmpzr1t_l9r_go_relaxed.owl cellular response to hydrocortisone stimulus mah 2009-12-11T03:57:55Z biological_process owl:Class GO:0061515 biolink:NamedThing myeloid cell development The process whose specific outcome is the progression of a myeloid cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:03:16Z biological_process owl:Class GO:0032383 biolink:NamedThing regulation of intracellular cholesterol transport Any process that modulates the frequency, rate or extent of the directed movement of cholesterol within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106350 biolink:NamedThing octaprenyl pyrophosphate synthase activity Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 5 isopentenyl diphosphate = 5 diphosphate + all-trans-octaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:27798|EC:2.5.1.90 hjd 2021-01-12T15:30:15Z molecular_function owl:Class GO:0008064 biolink:NamedThing regulation of actin polymerization or depolymerization Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099115 biolink:NamedThing chromosome, subtelomeric region A region of the chromosome, adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes. This region is usually heterochromatin. tmpzr1t_l9r_go_relaxed.owl subtelomeric heterochromatin|subtelomere|nuclear subtelomeric heterochromatin|sub-telomeric heterochromatin https://github.com/geneontology/go-ontology/issues/19086|https://github.com/geneontology/go-ontology/issues/22353 SO:0001997 vw 2014-07-18T13:32:59Z GO:1990421|GO:1990707 cellular_component owl:Class GO:0000781 biolink:NamedThing chromosome, telomeric region The end of a linear chromosome, required for the integrity and maintenance of the end. A chromosome telomere usually includes a region of telomerase-encoded repeats the length of which rarely exceeds 20 bp each and that permits the formation of a telomeric loop (T-loop). The telomeric repeat region is usually preceded by a sub-telomeric region that is gene-poor but rich in repetitive elements. Some telomeres only consist of the latter part (for eg. D. melanogaster telomeres). tmpzr1t_l9r_go_relaxed.owl telomere|nuclear chromosome, telomere|nuclear chromosome, telomeric region SO:0000624 Note that this term can be used in place of the obsolete cellular component term 'telomere ; GO:0005696'. Use with caution because this term refers to a specific region of the chromosome and not a protein complex. GO:0000784 cellular_component owl:Class GO:0008267 biolink:NamedThing poly-glutamine tract binding Binding to a polyglutamine tract, i.e. a series of consecutive glutamine residues, in a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006398 biolink:NamedThing mRNA 3'-end processing by stem-loop binding and cleavage Any mRNA 3'-end processing that involves the binding to and cleavage of a stem-loop structure. For example, histone mRNAs contain a highly conserved stem-loop sequence at the 3' end of the mRNA with a 6 base pairs (bp) stem and a 4-nt loop. The mRNA is cleaved between these two elements, after the fourth or fifth nucleotide, which is typically an adenosine. tmpzr1t_l9r_go_relaxed.owl histone mRNA 3' end processing biological_process owl:Class GO:0031124 biolink:NamedThing mRNA 3'-end processing Any process involved in forming the mature 3' end of an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl mRNA 3' end processing biological_process owl:Class GO:0010481 biolink:NamedThing epidermal cell division Any process resulting in the physical partitioning and separation of an epidermal cell, any of the cells making up the epidermis, into daughter cells. tmpzr1t_l9r_go_relaxed.owl hypodermal cell division biological_process owl:Class GO:0030397 biolink:NamedThing membrane disassembly The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. tmpzr1t_l9r_go_relaxed.owl membrane degradation|membrane catabolism|membrane breakdown biological_process owl:Class GO:1900673 biolink:NamedThing olefin metabolic process The chemical reactions and pathways involving olefin. tmpzr1t_l9r_go_relaxed.owl olefin metabolism tt 2012-05-22T04:24:42Z biological_process owl:Class GO:0005048 biolink:NamedThing signal sequence binding Binding to a signal sequence, a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized. tmpzr1t_l9r_go_relaxed.owl leader sequence binding|protein signal sequence binding|signal sequence receptor GO:0008249 molecular_function owl:Class GO:0015110 biolink:NamedThing cyanate transmembrane transporter activity Enables the transfer of cyanate, NCO-, the anion of cyanic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102659 biolink:NamedThing UDP-glucose: 4-methylthiobutylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 4-methylthiobutylhydroximate <=> H+ + 3-methylthiopropyl-desulfoglucosinolate + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.195|MetaCyc:RXN-2208 molecular_function owl:Class GO:0110114 biolink:NamedThing negative regulation of lipid transporter activity Any process that decreases the frequency, rate, or extent of lipid transporter activity. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-06T19:21:44Z biological_process owl:Class GO:0052519 biolink:NamedThing positive regulation of nutrient release by symbiont Any process in which an organism activates, maintains or increases the frequency, rate or extent of the release of nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of nutrient release from symbiont|up regulation by host of nutrient release from symbiont|activation by host of nutrient release from symbiont|promotion of nutrient release from symbiont|upregulation by host of nutrient release from symbiont|up-regulation by host of nutrient release from symbiont|stimulation by host of nutrient release from symbiont biological_process owl:Class GO:0052460 biolink:NamedThing modulation of nutrient release by symbiont Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of nutrient release from symbiont biological_process owl:Class GO:1900820 biolink:NamedThing orlandin catabolic process The chemical reactions and pathways resulting in the breakdown of orlandin. tmpzr1t_l9r_go_relaxed.owl orlandin degradation|orlandin breakdown|orlandin catabolism di 2012-06-04T10:15:17Z biological_process owl:Class GO:1903773 biolink:NamedThing negative regulation of viral budding via host ESCRT complex Any process that stops, prevents or reduces the frequency, rate or extent of viral budding via host ESCRT complex. tmpzr1t_l9r_go_relaxed.owl downregulation of viral budding through the ESCRT machinery|inhibition of viral budding via host ESCRT complex|down regulation of viral budding through the ESCRT machinery|down regulation of viral budding via host ESCRT complex|down-regulation of viral budding through the ESCRT machinery|down-regulation of viral budding via host ESCRT complex|inhibition of viral budding through the ESCRT machinery|negative regulation of viral budding through the ESCRT machinery|downregulation of viral budding via host ESCRT complex als 2015-01-06T16:20:53Z biological_process owl:Class GO:1903772 biolink:NamedThing regulation of viral budding via host ESCRT complex Any process that modulates the frequency, rate or extent of viral budding via host ESCRT complex. tmpzr1t_l9r_go_relaxed.owl regulation of host-assisted viral budding|regulation of viral budding through the ESCRT machinery als 2015-01-06T16:20:43Z biological_process owl:Class GO:0071071 biolink:NamedThing regulation of phospholipid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids. tmpzr1t_l9r_go_relaxed.owl regulation of phospholipid anabolism|regulation of phospholipid formation|regulation of phospholipid synthesis|regulation of phospholipid biosynthesis mah 2009-11-04T03:05:11Z biological_process owl:Class GO:0006204 biolink:NamedThing IMP catabolic process The chemical reactions and pathways resulting in the breakdown of IMP, inosine monophosphate. tmpzr1t_l9r_go_relaxed.owl IMP degradation|IMP catabolism|IMP breakdown biological_process owl:Class GO:0009304 biolink:NamedThing tRNA transcription The synthesis of transfer RNA (tRNA) from a DNA template. tmpzr1t_l9r_go_relaxed.owl tRNA biosynthesis|tRNA synthesis|tRNA biosynthetic process biological_process owl:Class GO:0098781 biolink:NamedThing ncRNA transcription The transcription of non (protein) coding RNA from a DNA template. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900643 biolink:NamedThing regulation of chanoclavine-I biosynthetic process Any process that modulates the frequency, rate or extent of chanoclavine-I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of chanoclavine-I anabolism|regulation of chanoclavine-I biosynthesis|regulation of chanoclavine-I formation|regulation of chanoclavine-I synthesis di 2012-05-22T04:03:08Z biological_process owl:Class GO:0072708 biolink:NamedThing response to sorbitol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sorbitol stimulus. tmpzr1t_l9r_go_relaxed.owl response to glucitol mah 2012-04-11T03:40:57Z biological_process owl:Class GO:1990528 biolink:NamedThing Rvs161p-Rvs167p complex A protein complex that is involved in endocytosis in the yeast S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl rb 2014-11-05T23:11:32Z cellular_component owl:Class GO:1903395 biolink:NamedThing regulation of secondary cell septum biogenesis Any process that modulates the frequency, rate or extent of secondary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl di 2014-08-29T21:42:17Z biological_process owl:Class GO:0032563 biolink:NamedThing dADP binding Binding to dADP, deoxyadenosine diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006068 biolink:NamedThing ethanol catabolic process The chemical reactions and pathways resulting in the breakdown of ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation. tmpzr1t_l9r_go_relaxed.owl ethanol degradation|ethanol breakdown|ethanol catabolism biological_process owl:Class GO:0006067 biolink:NamedThing ethanol metabolic process The chemical reactions and pathways involving ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation. tmpzr1t_l9r_go_relaxed.owl ethanol metabolism biological_process owl:Class GO:1901103 biolink:NamedThing gramicidin S biosynthetic process The chemical reactions and pathways resulting in the formation of gramicidin S. tmpzr1t_l9r_go_relaxed.owl gramicidin S formation|gramicidin S anabolism|gramicidin S synthesis|gramicidin S biosynthesis yaf 2012-07-11T02:31:00Z biological_process owl:Class GO:1901101 biolink:NamedThing gramicidin S metabolic process The chemical reactions and pathways involving gramicidin S. tmpzr1t_l9r_go_relaxed.owl gramicidin S metabolism yaf 2012-07-11T02:30:26Z biological_process owl:Class GO:0010613 biolink:NamedThing positive regulation of cardiac muscle hypertrophy Any process that increases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902866 biolink:NamedThing regulation of retina development in camera-type eye Any process that modulates the frequency, rate or extent of retina development in camera-type eye. tmpzr1t_l9r_go_relaxed.owl regulation of retinal development|regulation of retina development in camera-style eye mr 2014-04-03T15:24:17Z biological_process owl:Class GO:0070605 biolink:NamedThing regulation of (1->3)-alpha-glucan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl regulation of 1,3-alpha-glucan metabolism|regulation of 1,3-alpha-glucan metabolic process|regulation of alpha-1,3 glucan metabolism|regulation of alpha-1,3 glucan metabolic process mah 2009-04-29T01:20:12Z biological_process owl:Class GO:0046969 biolink:NamedThing NAD-dependent histone deacetylase activity (H3-K9 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 9) + H2O = histone H3 L-lysine (position 9) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 9 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9604829 molecular_function owl:Class GO:0017136 biolink:NamedThing NAD-dependent histone deacetylase activity Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from a histone. tmpzr1t_l9r_go_relaxed.owl SIR2 molecular_function owl:Class GO:0008905 biolink:NamedThing mannose-phosphate guanylyltransferase activity Catalysis of the transfer of a phosphate group from GTP or GDP to a mannose molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902253 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway by p53 class mediator Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl regulation of signal transduction by p53 class mediator resulting in induction of apoptosis|regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator rl 2013-06-20T19:41:38Z biological_process owl:Class GO:0034588 biolink:NamedThing piRNA catabolic process The chemical reactions and pathways resulting in the breakdown of piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. tmpzr1t_l9r_go_relaxed.owl piRNA breakdown|Piwi-associated RNA catabolic process|piRNA catabolism|piRNA degradation biological_process owl:Class GO:1905898 biolink:NamedThing positive regulation of response to endoplasmic reticulum stress Any process that activates or increases the frequency, rate or extent of response to endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular response to endoplasmic reticulum stress|activation of cellular response to endoplasmic reticulum stress|upregulation of response to endoplasmic reticulum stress|positive regulation of cellular response to endoplasmic reticulum stress|up-regulation of ER stress response|positive regulation of ER stress response|upregulation of response to ER stress|up-regulation of response to ER stress|up regulation of cellular response to endoplasmic reticulum stress|up regulation of response to endoplasmic reticulum stress|up regulation of response to ER stress|activation of response to ER stress|up regulation of ER stress response|positive regulation of response to ER stress|upregulation of cellular response to endoplasmic reticulum stress|up-regulation of response to endoplasmic reticulum stress|upregulation of ER stress response|activation of response to endoplasmic reticulum stress|activation of ER stress response bc 2017-02-01T11:43:03Z biological_process owl:Class GO:0047269 biolink:NamedThing poly(ribitol-phosphate) N-acetylglucosaminyltransferase activity Catalysis of the reaction: poly(ribitol phosphate) + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-poly(ribitol phosphate) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:poly(ribitol-phosphate) N-acetyl-D-glucosaminyltransferase activity|uridine diphosphoacetylglucosamine-poly(ribitol phosphate) acetylglucosaminyltransferase activity|UDP acetylglucosamine-poly(ribitol phosphate) acetylglucosaminyltransferase activity EC:2.4.1.70|MetaCyc:2.4.1.70-RXN|RHEA:21012 molecular_function owl:Class GO:0008052 biolink:NamedThing sensory organ boundary specification The process in which boundaries between a sensory organ and the surrounding tissue are established and maintained. tmpzr1t_l9r_go_relaxed.owl sense organ boundary specification biological_process owl:Class GO:0010160 biolink:NamedThing formation of animal organ boundary The regionalization process that specifies animal organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues. tmpzr1t_l9r_go_relaxed.owl organ boundary specification GO:0048862 biological_process owl:Class GO:0060252 biolink:NamedThing positive regulation of glial cell proliferation Any process that activates or increases the rate or extent of glial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990777 biolink:NamedThing lipoprotein particle A spherical particle containing non-covalently associated proteins and lipids. Examples are plasma lipoprotein particles which transport lipids in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl pr 2015-06-18T08:42:53Z cellular_component owl:Class GO:0032994 biolink:NamedThing protein-lipid complex A macromolecular complex containing separate protein and lipid molecules. Separate in this context means not covalently bound to each other. tmpzr1t_l9r_go_relaxed.owl Macromolecular complexes in which the lipid component is all covalently bound to protein are not considered protein-lipid complexes. cellular_component owl:Class GO:2000250 biolink:NamedThing negative regulation of actin cytoskeleton reorganization Any process that stops, prevents, or reduces the frequency, rate or extent of actin cytoskeleton reorganization. tmpzr1t_l9r_go_relaxed.owl negative regulation of actin cytoskeleton reorganisation|negative regulation of actin cytoskeleton remodeling vk 2010-11-11T01:25:29Z biological_process owl:Class GO:0031115 biolink:NamedThing negative regulation of microtubule polymerization Any process that stops, prevents, or reduces the frequency, rate or extent of microtubule polymerization. tmpzr1t_l9r_go_relaxed.owl downregulation of microtubule polymerization|down-regulation of microtubule polymerization|inhibition of microtubule polymerization|down regulation of microtubule polymerization biological_process owl:Class GO:0055038 biolink:NamedThing recycling endosome membrane The lipid bilayer surrounding a recycling endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098925 biolink:NamedThing retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission Modulation of synaptic transmission by cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:1901353 biolink:NamedThing positive regulation of phosphatidylglycerol biosynthetic process Any process that activates or increases the frequency, rate or extent of phosphatidylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of phosphatidylglycerol biosynthesis|up-regulation of phosphatidylglycerol formation|positive regulation of phosphatidylglycerol synthesis|upregulation of phosphatidylglycerol anabolism|upregulation of phosphatidylglycerol synthesis|up regulation of phosphatidylglycerol synthesis|activation of phosphatidylglycerol biosynthesis|up regulation of phosphatidylglycerol biosynthetic process|upregulation of phosphatidylglycerol formation|positive regulation of phosphatidylglycerol anabolism|upregulation of phosphatidylglycerol biosynthetic process|up-regulation of phosphatidylglycerol anabolism|activation of phosphatidylglycerol biosynthetic process|activation of phosphatidylglycerol synthesis|up regulation of phosphatidylglycerol biosynthesis|up-regulation of phosphatidylglycerol biosynthesis|positive regulation of phosphatidylglycerol formation|up regulation of phosphatidylglycerol formation|activation of phosphatidylglycerol formation|positive regulation of phosphatidylglycerol biosynthesis|activation of phosphatidylglycerol anabolism|up regulation of phosphatidylglycerol anabolism|up-regulation of phosphatidylglycerol synthesis|up-regulation of phosphatidylglycerol biosynthetic process dgf 2012-09-12T20:48:11Z biological_process owl:Class GO:1901351 biolink:NamedThing regulation of phosphatidylglycerol biosynthetic process Any process that modulates the frequency, rate or extent of phosphatidylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidylglycerol anabolism|regulation of phosphatidylglycerol biosynthesis|regulation of phosphatidylglycerol synthesis|regulation of phosphatidylglycerol formation dgf 2012-09-12T20:46:37Z biological_process owl:Class GO:1901474 biolink:NamedThing azole transmembrane transporter activity Enables the directed movement of azoles, heterocyclic compound found in many biologically important substances, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl azole transporter activity tb 2012-10-04T20:00:27Z GO:0045118 molecular_function owl:Class GO:0061035 biolink:NamedThing regulation of cartilage development Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T03:41:35Z biological_process owl:Class GO:1900501 biolink:NamedThing negative regulation of butyryl-CoA catabolic process to butyrate Any process that stops, prevents or reduces the frequency, rate or extent of butyryl-CoA catabolic process to butyrate. tmpzr1t_l9r_go_relaxed.owl negative regulation of butyryl-CoA catabolism to butyrate|down-regulation of butyryl-CoA catabolic process to butyrate|down-regulation of butyryl-CoA catabolism to butyrate|inhibition of butyryl-CoA catabolic process to butyrate|down regulation of butyryl-CoA catabolism to butyrate|inhibition of butyryl-CoA catabolism to butyrate|downregulation of butyryl-CoA catabolic process to butyrate|downregulation of butyryl-CoA catabolism to butyrate|down regulation of butyryl-CoA catabolic process to butyrate tt 2012-05-02T03:56:30Z biological_process owl:Class GO:1900694 biolink:NamedThing positive regulation of (+)-kotanin biosynthetic process Any process that activates or increases the frequency, rate or extent of (+)-kotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of (+)-kotanin biosynthetic process|up regulation of (+)-kotanin anabolism|up-regulation of (+)-kotanin anabolism|up regulation of (+)-kotanin formation|positive regulation of (+)-kotanin anabolism|activation of (+)-kotanin anabolism|positive regulation of (+)-kotanin biosynthesis|upregulation of (+)-kotanin anabolism|upregulation of (+)-kotanin biosynthesis|up-regulation of (+)-kotanin biosynthesis|positive regulation of (+)-kotanin synthesis|upregulation of (+)-kotanin biosynthetic process|activation of (+)-kotanin biosynthetic process|upregulation of (+)-kotanin synthesis|positive regulation of (+)-kotanin formation|up regulation of (+)-kotanin synthesis|up regulation of (+)-kotanin biosynthetic process|up-regulation of (+)-kotanin synthesis|up-regulation of (+)-kotanin formation|upregulation of (+)-kotanin formation|up regulation of (+)-kotanin biosynthesis|activation of (+)-kotanin biosynthesis|activation of (+)-kotanin synthesis|activation of (+)-kotanin formation di 2012-05-22T04:53:33Z biological_process owl:Class GO:1900692 biolink:NamedThing regulation of (+)-kotanin biosynthetic process Any process that modulates the frequency, rate or extent of (+)-kotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of (+)-kotanin formation|regulation of (+)-kotanin anabolism|regulation of (+)-kotanin synthesis|regulation of (+)-kotanin biosynthesis di 2012-05-22T04:53:04Z biological_process owl:Class GO:0003429 biolink:NamedThing growth plate cartilage chondrocyte morphogenesis The process in which the structures of a chondrocyte in the growth plate cartilage are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T12:22:24Z biological_process owl:Class GO:0030654 biolink:NamedThing beta-lactam antibiotic biosynthetic process The chemical reactions and pathways resulting in the formation of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins. tmpzr1t_l9r_go_relaxed.owl beta-lactam antibiotic synthesis|beta-lactam antibiotic biosynthesis|beta-lactam antibiotic formation|beta-lactam antibiotic anabolism biological_process owl:Class GO:0033355 biolink:NamedThing ascorbate glutathione cycle A cyclic series of interconversions involving L-ascorbate and glutathione that scavenges hydrogen peroxide and reduces it to water, with concomitant oxidation of NADPH. tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide detoxification MetaCyc:PWY-2261 biological_process owl:Class GO:0070109 biolink:NamedThing positive regulation of interleukin-27-mediated signaling pathway Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-27-mediated signaling pathway|positive regulation of IL27RA/IL6ST signaling pathway|positive regulation of interleukin-27-mediated signalling pathway biological_process owl:Class GO:0015274 biolink:NamedThing organellar voltage-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. The membrane is an organellar membrane. tmpzr1t_l9r_go_relaxed.owl organellar voltage-dependent chloride channel activity|organellar voltage gated chloride channel activity molecular_function owl:Class GO:0090326 biolink:NamedThing positive regulation of locomotion involved in locomotory behavior Any process that increases the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:26:58Z biological_process owl:Class GO:0046822 biolink:NamedThing regulation of nucleocytoplasmic transport Any process that modulates the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010513 biolink:NamedThing positive regulation of phosphatidylinositol biosynthetic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009188 biolink:NamedThing ribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside diphosphate anabolism|ribonucleoside diphosphate formation|ribonucleoside diphosphate biosynthesis|ribonucleoside diphosphate synthesis biological_process owl:Class GO:0032217 biolink:NamedThing riboflavin transmembrane transporter activity Enables the transfer of riboflavin from one side of a membrane to the other. Riboflavin (vitamin B2) is a water-soluble B-complex vitamin, converted in the cell to FMN and FAD, cofactors required for the function of flavoproteins. tmpzr1t_l9r_go_relaxed.owl riboflavin transporter activity RHEA:35015|Reactome:R-HSA-3165230 molecular_function owl:Class GO:0015318 biolink:NamedThing inorganic molecular entity transmembrane transporter activity Enables the transfer of an inorganic molecular entity from the outside of a cell to the inside of the cell across a membrane. An inorganic molecular entity is a molecular entity that contains no carbon. tmpzr1t_l9r_go_relaxed.owl inorganic uptake permease activity|inorganic solute uptake transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/14372 molecular_function owl:Class GO:0030389 biolink:NamedThing fructosamine metabolic process The chemical reactions and pathways involving fructosamine, a fructose molecule containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl fructosamine metabolism biological_process owl:Class GO:0050349 biolink:NamedThing triacetate-lactonase activity Catalysis of the reaction: H(2)O + triacetate lactone = triacetate. tmpzr1t_l9r_go_relaxed.owl triacetic acid lactone hydrolase activity|TAL hydrolase activity|triacetate lactone hydrolase activity|triacetic lactone hydrolase activity|triacetolactone lactonohydrolase activity RHEA:22260|EC:3.1.1.38|MetaCyc:TRIACETATE-LACTONASE-RXN|KEGG_REACTION:R03702 molecular_function owl:Class GO:1903084 biolink:NamedThing protein localization to condensed nuclear chromosome A process in which a protein is transported to, or maintained in, a location within a condensed nuclear chromosome. tmpzr1t_l9r_go_relaxed.owl protein localisation to condensed nuclear chromosome|protein localisation in condensed nuclear chromosome|protein localization in condensed nuclear chromosome kmv 2014-05-29T20:33:17Z biological_process owl:Class GO:2001010 biolink:NamedThing negative regulation of plant-type cell wall cellulose biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell wall cellulose biosynthesis|negative regulation of cellulose biosynthesis during cell wall biosynthesis tt 2011-08-08T08:47:22Z biological_process owl:Class GO:0071922 biolink:NamedThing regulation of cohesin loading Any process that modulates the frequency, rate or extent of a process in which a cohesin complex is transported to, or maintained at, a part of a chromosome that is organized into chromatin. tmpzr1t_l9r_go_relaxed.owl regulation of cohesin association with chromatin|regulation of cohesin localisation to chromatin|regulation of cohesin localization to chromatin mah 2010-09-28T11:13:35Z biological_process owl:Class GO:0009549 biolink:NamedThing cellulose microfibril A microfibril composed of cellulose arranged in orthogonal layers. Cellulose is a straight chain polysaccharide composed of B(14) linked glucose subunits. It is a major component of plant cell walls. Higher plant microfibrils are about 10nm in diameter and extremely long in relation to their width. The cellulose molecules are oriented parallel to the long axis of the microfibril in a paracrystalline array, which provides great tensile strength. The microfibrils are held in place by the wall matrix and their orientation is closely controlled by the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016102 biolink:NamedThing diterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units. tmpzr1t_l9r_go_relaxed.owl diterpene biosynthetic process|diterpenoid anabolism|diterpenoid synthesis|diterpene biosynthesis|diterpenoid formation|diterpenoid biosynthesis biological_process owl:Class GO:0090227 biolink:NamedThing regulation of red or far-red light signaling pathway Any process that modulates the rate, frequency or extent of the red or far-red signaling pathway, the series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. tmpzr1t_l9r_go_relaxed.owl regulation of red or far-red light signalling pathway|regulation of phytochrome signaling pathway tb 2010-01-19T04:03:29Z biological_process owl:Class GO:1903613 biolink:NamedThing regulation of protein tyrosine phosphatase activity Any process that modulates the frequency, rate or extent of protein tyrosine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation of phosphotyrosine histone phosphatase activity|regulation of phosphoprotein phosphatase (phosphotyrosine) activity|regulation of PTPase activity|regulation of protein phosphotyrosine phosphatase activity|regulation of protein-tyrosine-phosphatase activity|regulation of phosphotyrosylprotein phosphatase activity|regulation of tyrosine O-phosphate phosphatase activity|regulation of phosphotyrosine phosphatase activity|regulation of PTP-phosphatase activity|regulation of tyrosylprotein phosphatase activity|regulation of PPT-phosphatase activity|regulation of phosphotyrosine protein phosphatase activity|regulation of protein-tyrosine-phosphate phosphohydrolase activity|regulation of [phosphotyrosine]protein phosphatase activity sl 2014-11-18T01:11:38Z biological_process owl:Class GO:0001866 biolink:NamedThing NK T cell proliferation The expansion of a NK T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl NT cell proliferation|natural T cell proliferation|NK T-cell proliferation|NK T-lymphocyte proliferation|NKT cell proliferation|natural killer T cell proliferation|NK T lymphocyte proliferation Note that NK T cells are a distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments. biological_process owl:Class GO:0043646 biolink:NamedThing cephalosporin biosynthetic process The chemical reactions and pathways resulting in the formation of a cephalosporin, any of large class of tetracyclic triterpene broad-spectrum antibiotics similar both chemically and in their mode of action to penicillin, first isolated from the culture filtrates of mediterranean fungus acremonium (cephalosporium acremonium), and effective against gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903566 biolink:NamedThing positive regulation of protein localization to cilium Any process that activates or increases the frequency, rate or extent of protein localization to cilium. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein localization to cilium|up regulation of protein localization to cilium|activation of protein localization to cilium|upregulation of protein localization to cilium krc 2014-10-24T20:58:28Z biological_process owl:Class GO:0009078 biolink:NamedThing pyruvate family amino acid metabolic process The chemical reactions and pathways involving any amino acid that requires pyruvate for its synthesis, e.g. alanine. tmpzr1t_l9r_go_relaxed.owl pyruvate family amino acid metabolism biological_process owl:Class GO:0051751 biolink:NamedThing alpha-1,4-mannosyltransferase activity Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->4) linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900793 biolink:NamedThing shamixanthone biosynthetic process The chemical reactions and pathways resulting in the formation of shamixanthone. tmpzr1t_l9r_go_relaxed.owl shamixanthone biosynthesis|shamixanthone synthesis|shamixanthone anabolism|shamixanthone formation di 2012-06-04T09:40:49Z biological_process owl:Class GO:0006585 biolink:NamedThing dopamine biosynthetic process from tyrosine The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine. tmpzr1t_l9r_go_relaxed.owl dopamine anabolism from tyrosine|dopamine synthesis from tyrosine|dopamine formation from tyrosine biological_process owl:Class GO:0042416 biolink:NamedThing dopamine biosynthetic process The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline. tmpzr1t_l9r_go_relaxed.owl dopamine synthesis|dopamine formation|dopamine biosynthesis|dopamine anabolism biological_process owl:Class GO:0033217 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to iron ion starvation Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of iron ions. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter in response to iron deficiency biological_process owl:Class GO:1990139 biolink:NamedThing protein localization to nuclear periphery A process in which a protein is transported to, or maintained in, a location within the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl mah 2013-07-09T13:35:49Z biological_process owl:Class GO:0000439 biolink:NamedThing transcription factor TFIIH core complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. tmpzr1t_l9r_go_relaxed.owl SSL2-core TFIIH complex|core TFIIH complex GO:0000441 cellular_component owl:Class GO:0007142 biolink:NamedThing male meiosis II A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline. tmpzr1t_l9r_go_relaxed.owl male meiosis II nuclear division biological_process owl:Class GO:0007135 biolink:NamedThing meiosis II The second nuclear division of meiosis, in which the two chromatids in each chromosome are separated, resulting in four daughter nuclei from the two nuclei produced in meiosis II. tmpzr1t_l9r_go_relaxed.owl meiosis II nuclear division Wikipedia:Meiosis#Meiosis_II biological_process owl:Class GO:0048301 biolink:NamedThing positive regulation of isotype switching to IgD isotypes Any process that activates or increases the frequency, rate or extent of isotype switching to IgD isotypes. tmpzr1t_l9r_go_relaxed.owl activation of isotype switching to IgD isotypes|positive regulation of class switching to IgD isotypes|positive regulation of isotype switch recombination to IgD isotypes|positive regulation of class switch recombination to IgD isotypes|stimulation of isotype switching to IgD isotypes|upregulation of isotype switching to IgD isotypes|up regulation of isotype switching to IgD isotypes|up-regulation of isotype switching to IgD isotypes biological_process owl:Class GO:0045830 biolink:NamedThing positive regulation of isotype switching Any process that activates or increases the frequency, rate or extent of isotype switching. tmpzr1t_l9r_go_relaxed.owl upregulation of isotype switching|positive regulation of class switching|activation of isotype switching|up regulation of isotype switching|up-regulation of isotype switching|positive regulation of class switch recombination|stimulation of isotype switching|positive regulation of isotype switch recombination biological_process owl:Class GO:0050146 biolink:NamedThing nucleoside phosphotransferase activity Catalysis of the reaction: a nucleotide + a 2'-deoxynucleoside = a nucleoside + a 2'-deoxynucleoside 5'-monophosphate. tmpzr1t_l9r_go_relaxed.owl nucleotide:nucleoside 5'-phosphotransferase activity|nucleotide:3'-deoxynucleoside 5'-phosphotransferase activity|nucleotide:2'-nucleoside 5'-phosphotransferase activity|nonspecific nucleoside phosphotransferase activity Reactome:R-HSA-2162066|EC:2.7.1.77|RHEA:19961|MetaCyc:NUCLEOSIDE-PHOSPHOTRANSFERASE-RXN molecular_function owl:Class GO:0102278 biolink:NamedThing N,N'-diacetylchitobiose synthase activity Catalysis of the reaction: n H2O + chitin <=> N,N'-diacetylchitobiose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12554 molecular_function owl:Class GO:0036123 biolink:NamedThing histone H3-K9 dimethylation The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 K9 dimethylation|histone lysine H3 K9 dimethylation bf 2012-02-20T03:06:15Z biological_process owl:Class GO:0018014 biolink:NamedThing N-terminal peptidyl-methionine methylation The methylation of the N-terminal methionine of proteins to form the derivative N-methyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0064 biological_process owl:Class GO:0018206 biolink:NamedThing peptidyl-methionine modification The modification of peptidyl-methionine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048549 biolink:NamedThing positive regulation of pinocytosis Any process that activates, maintains or increases the rate of pinocytosis. Pinocytosis is the process in which cells take in liquid material from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes. tmpzr1t_l9r_go_relaxed.owl up-regulation of pinocytosis|up regulation of pinocytosis|upregulation of pinocytosis|stimulation of pinocytosis|activation of pinocytosis biological_process owl:Class GO:1903214 biolink:NamedThing regulation of protein targeting to mitochondrion Any process that modulates the frequency, rate or extent of protein targeting to mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial translocation|regulation of protein-mitochondrial targeting|regulation of protein import into mitochondrion|regulation of protein targeting to mitochondria|regulation of mitochondrial protein import bf 2014-07-24T10:17:13Z biological_process owl:Class GO:0034324 biolink:NamedThing O-hexanoyltransferase activity Catalysis of the transfer of a hexyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034327 biolink:NamedThing hexanoyltransferase activity Catalysis of the transfer of a hexanoyl (CH3-[CH2]4-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006073 biolink:NamedThing cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl cellular glucan metabolism biological_process owl:Class GO:0071318 biolink:NamedThing cellular response to ATP Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to adenosine 5'-triphosphate|cellular response to adenosine triphosphate mah 2009-12-10T05:09:47Z biological_process owl:Class GO:0047902 biolink:NamedThing formylaspartate deformylase activity Catalysis of the reaction: N-formyl-L-aspartate + H2O = formate + L-aspartate. tmpzr1t_l9r_go_relaxed.owl formylaspartic formylase (formylase I, formylase II)|N-formyl-L-aspartate amidohydrolase activity MetaCyc:FORMYLASPARTATE-DEFORMYLASE-RXN|EC:3.5.1.8|RHEA:22040 molecular_function owl:Class GO:0044837 biolink:NamedThing actomyosin contractile ring organization A process which results in the assembly, arrangement of constituent parts, or disassembly of an actomyosin contractile ring. tmpzr1t_l9r_go_relaxed.owl cytokinesis, actomyosin contractile ring organization jl 2014-02-26T15:31:31Z biological_process owl:Class GO:0035303 biolink:NamedThing regulation of dephosphorylation Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019455 biolink:NamedThing L-cysteine catabolic process via cystine, using cystine reductase The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme cystine reductase (EC:1.8.1.6). tmpzr1t_l9r_go_relaxed.owl L-cysteine breakdown via cystine, using cystine reductase|L-cysteine degradation via cystine, using cystine reductase biological_process owl:Class GO:0019453 biolink:NamedThing L-cysteine catabolic process via cystine The chemical reactions and pathways resulting in the breakdown of L-cysteine, via the intermediate cystine. tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation via cystine|L-cysteine breakdown via cystine biological_process owl:Class GO:0048521 biolink:NamedThing negative regulation of behavior Any process that stops, prevents, or reduces the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli. tmpzr1t_l9r_go_relaxed.owl down-regulation of behavior|inhibition of behavior|down regulation of behavior|downregulation of behavior biological_process owl:Class GO:0060325 biolink:NamedThing face morphogenesis The process in which the anatomical structures of the face are generated and organized. The face is the ventral division of the head. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903203 biolink:NamedThing regulation of oxidative stress-induced neuron death Any process that modulates the frequency, rate or extent of oxidative stress-induced neuron death. tmpzr1t_l9r_go_relaxed.owl regulation of neuron death in response to oxidative stress|regulation of neuronal cell death in response to oxidative stress bf 2014-07-21T16:17:30Z biological_process owl:Class GO:2000340 biolink:NamedThing positive regulation of chemokine (C-X-C motif) ligand 1 production Any process that activates or increases the frequency, rate or extent of chemokine (C-X-C motif) ligand 1 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of CXCL1 production|positive regulation of keratinocyte derived chemokine production|positive regulation of SCYB1 production|positive regulation of KC production mah 2011-02-01T10:46:33Z biological_process owl:Class GO:0016162 biolink:NamedThing cellulose 1,4-beta-cellobiosidase activity Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl 1,4-beta-D-glucan cellobiohydrolase activity|exoglucanase activity|exo-cellobiohydrolase activity|cellobiohydrolase activity|1,4-beta-cellobiohydrolase activity|exo-1,4-beta-D-glucanase activity|C1 cellulase activity|cellobiosidase activity|avicelase activity|beta-1,4-glucan cellobiosylhydrolase activity|CBH 1|exocellobiohydrolase activity|cellobiohydrolase I|beta-1,4-glucan cellobiohydrolase activity|exo-beta-1,4-glucan cellobiohydrolase activity|1,4-beta-glucan cellobiosidase activity MetaCyc:3.2.1.91-RXN|EC:3.2.1.91 molecular_function owl:Class GO:0014712 biolink:NamedThing positive regulation of branchiomeric skeletal muscle development Any process that activates, maintains or increases the frequency, rate or extent of branchiomeric skeletal muscle development. Branchiomeric skeletal muscle development is the process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019702 biolink:NamedThing protein-arginine N5-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the delta-nitrogen atom of peptidyl-arginine residues. The reaction is S-adenosyl-L-methionine + [protein]-L-arginine = S-adenosyl-L-homocysteine + [protein]-N5-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl protein-arginine delta-N-methyltransferase activity|type IV protein arginine methyltransferase activity|type IV PRMT activity|S-adenosyl-L-methionine:[protein]-L-arginine N-methyltransferase ([protein]-N5-methyl-L-arginine-forming) RHEA:48116|EC:2.1.1.322 This enzyme, characterized from the yeast Saccharomyces cerevisiae, methylates the delta-nitrogen atom of arginine residues within proteins. Among its substrates are Arg67 of the ribosomal protein L12. molecular_function owl:Class GO:0070042 biolink:NamedThing rRNA (uridine-N3-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methyluridine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905409 biolink:NamedThing positive regulation of creatine transmembrane transporter activity Any process that activates or increases the frequency, rate or extent of creatine transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl activation of creatine transmembrane transporter activity|upregulation of creatine transmembrane transporter activity|up regulation of creatine transmembrane transporter activity|up-regulation of creatine transmembrane transporter activity bc 2016-08-25T15:09:04Z biological_process owl:Class GO:0032281 biolink:NamedThing AMPA glutamate receptor complex An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus. tmpzr1t_l9r_go_relaxed.owl AMPA receptor|AMPA-selective glutamate receptor complex|alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex cellular_component owl:Class GO:0044059 biolink:NamedThing modulation by symbiont of host endocrine process The alteration by a symbiont organism of the functioning of a endocrine process, any of the hormonal, neural, and secretory processes that release products into the blood or lymph, in the host organism. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host endocrine process biological_process owl:Class GO:0002164 biolink:NamedThing larval development The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. The larva is the early, immature form of an that at birth or hatching is fundamentally unlike its parent and must metamorphose before assuming the adult characters. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990961 biolink:NamedThing xenobiotic detoxification by transmembrane export across the plasma membrane A process that reduces or removes the toxicity of a xenobiotic by exporting it outside the cell. tmpzr1t_l9r_go_relaxed.owl drug transmembrane export https://github.com/geneontology/go-ontology/issues/17141 sl 2016-06-06T23:47:22Z biological_process owl:Class GO:0007283 biolink:NamedThing spermatogenesis The developmental process by which male germ line stem cells self renew or give rise to successive cell types resulting in the development of a spermatozoa. tmpzr1t_l9r_go_relaxed.owl generation of spermatozoa Wikipedia:Spermatogenesis biological_process owl:Class GO:0043865 biolink:NamedThing methionine transmembrane transporter activity Enables the transfer of methionine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl methionine importing activity|methionine-importing activity|methionine importer|methionine importer activity pr 2013-11-15T10:35:04Z GO:1990240 molecular_function owl:Class GO:0070668 biolink:NamedThing positive regulation of mast cell proliferation Any process that activates or increases the rate or extent of mast cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of mast cell proliferation|upregulation of mast cell proliferation|activation of mast cell proliferation|stimulation of mast cell proliferation|up-regulation of mast cell proliferation mah 2009-05-28T05:48:30Z biological_process owl:Class GO:0070666 biolink:NamedThing regulation of mast cell proliferation Any process that modulates the frequency, rate or extent of mast cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T05:40:43Z biological_process owl:Class GO:0033492 biolink:NamedThing esculetin metabolic process The chemical reactions and pathways involving esculetin, 6,7-dihydroxycoumarin. tmpzr1t_l9r_go_relaxed.owl esculetin metabolism biological_process owl:Class GO:0072741 biolink:NamedThing protein localization to cell division site A cellular protein localization process in which a protein is transported to, or maintained at, the site of cell division. tmpzr1t_l9r_go_relaxed.owl protein localisation to cell division site mah 2012-08-16T11:51:48Z biological_process owl:Class GO:1900319 biolink:NamedThing negative regulation of methane biosynthetic process from dimethylamine Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from dimethylamine. tmpzr1t_l9r_go_relaxed.owl downregulation of methane biosynthetic process from dimethylamine|inhibition of methane biosynthetic process from dimethylamine|down regulation of methane biosynthetic process from dimethylamine|down-regulation of methane biosynthetic process from dimethylamine tt 2012-04-06T01:43:31Z biological_process owl:Class GO:0005124 biolink:NamedThing scavenger receptor binding Binding to scavenger receptors, a family of proteins that are expressed on myeloid cells and are involved in the uptake of effete cellular components and foreign particles. tmpzr1t_l9r_go_relaxed.owl scavenger receptor ligand molecular_function owl:Class GO:1990613 biolink:NamedThing mitochondrial membrane fusion The joining of two lipid bilayers that surround the mitochondria. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-21T06:58:18Z biological_process owl:Class GO:0062145 biolink:NamedThing L-propargylglycine--L-glutamate ligase activity Catalysis of the reaction: ATP + L-glutamate + L-propargylglycine = ADP + H(+) + L-gamma-glutamyl-L-propargylglycine + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:59896 dph 2019-09-02T16:56:59Z molecular_function owl:Class GO:0090386 biolink:NamedThing phagosome maturation involved in apoptotic cell clearance A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell and contributes to apoptotic cell clearance. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:57:39Z biological_process owl:Class GO:0090382 biolink:NamedThing phagosome maturation A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-19T11:10:34Z biological_process owl:Class GO:0080116 biolink:NamedThing glucuronoxylan glucuronosyltransferase activity Catalysis of the transfer of glucuronate to the xylan backbone of glucuronoxylan molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T03:33:49Z molecular_function owl:Class GO:0015020 biolink:NamedThing glucuronosyltransferase activity Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside. tmpzr1t_l9r_go_relaxed.owl 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|p-nitrophenol UDP-glucuronosyltransferase activity|UDPGA-glucuronyltransferase activity|p-nitrophenylglucuronosyltransferase activity|estrone UDPglucuronosyltransferase activity|1-naphthol-UDP-glucuronosyltransferase activity|UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|4-methylumbelliferone UDP-glucuronosyltransferase activity|3-OH androgenic UDPGT activity|pnp-UDPGT activity|UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|ciramadol UDP-glucuronyltransferase activity|UDPGT activity|phenyl-UDP-glucuronosyltransferase activity|UDPGA transferase activity|uridine 5'-diphosphoglucuronyltransferase activity|4-nitrophenol UDPGT activity|4-hydroxybiphenyl UDP-glucuronosyltransferase activity|p-hydroxybiphenyl UDP glucuronyltransferase activity|uridine diphosphate glucuronyltransferase activity|uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|UDP glucuronic acid transferase activity|uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|bilirubin uridine diphosphoglucuronyltransferase activity|uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|bilirubin UDPGT activity|UDP glucuronate-estradiol-glucuronosyltransferase activity|17-OH steroid UDPGT activity|UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|bilirubin monoglucuronide glucuronyltransferase activity|PNP-UDPGT|uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|p-phenylphenol glucuronyltransferase activity|estriol UDPglucuronosyltransferase activity|uridine diphosphoglucuronyltransferase activity|bilirubin glucuronyltransferase activity|bilirubin UDP-glucuronosyltransferase activity|uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|4-nitrophenol UDP-glucuronyltransferase activity|p-nitrophenol UDP-glucuronyltransferase activity|UDP glucuronyltransferase activity|GT activity|17beta-hydroxysteroid UDP-glucuronosyltransferase activity|UDP glucuronosyltransferase activity|uridine diphosphoglucuronosyltransferase activity|UDP-glucuronate-bilirubin glucuronyltransferase activity|UDP glucuronate-estriol glucuronosyltransferase activity|3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|morphine glucuronyltransferase activity|1-naphthol glucuronyltransferase activity|UDP-glucuronosyltransferase activity|UDP-glucuronyltransferase activity Reactome:R-HSA-174916|MetaCyc:UDP-GLUCURONOSYLTRANSFERASE-RXN|Reactome:R-HSA-9036104|Reactome:R-HSA-9638097|Reactome:R-HSA-159194|Reactome:R-HSA-5604975|Reactome:R-HSA-9632038|Reactome:R-HSA-159179|Reactome:R-HSA-5604954|Reactome:R-HSA-5617143|EC:2.4.1.17|RHEA:21032|Reactome:R-HSA-8941701|Reactome:R-HSA-174931|Reactome:R-HSA-9632039|Reactome:R-HSA-2162099|Reactome:R-HSA-9036102 GO:0003981 molecular_function owl:Class GO:1903806 biolink:NamedThing L-isoleucine import across plasma membrane The directed movement of L-isoleucine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-isoleucine import into cell|L-isoleucine import|isoleucine import tb 2012-10-01T11:10:51Z GO:0090476|GO:0090477 biological_process owl:Class GO:0006396 biolink:NamedThing RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Post-transcriptional_modification GO:0006394 biological_process owl:Class GO:0033242 biolink:NamedThing negative regulation of cellular amine catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines. tmpzr1t_l9r_go_relaxed.owl negative regulation of amine catabolism|negative regulation of amine breakdown|negative regulation of amine degradation biological_process owl:Class GO:0019355 biolink:NamedThing nicotinamide nucleotide biosynthetic process from aspartate The chemical reactions and pathways resulting in the formation of nicotinamide nucleotide from other compounds, including aspartate. tmpzr1t_l9r_go_relaxed.owl nicotinamide nucleotide anabolism from aspartate|nicotinamide nucleotide synthesis from aspartate|nicotinamide nucleotide formation from aspartate biological_process owl:Class GO:0044614 biolink:NamedThing nuclear pore cytoplasmic filaments Filamentous extensions on cytoplasmic face of the nuclear pore complex (NPC). In S. cerevisiae, Nup159p, Nup82p, and Nup42p contribute to the cytoplasmic filaments. In vertebrates, Nup358 is a major component. tmpzr1t_l9r_go_relaxed.owl cytoplasmic fibers of the nuclear pore complex|cytoplasmic fibers of the NPC jl 2012-06-20T01:28:18Z cellular_component owl:Class GO:0060910 biolink:NamedThing negative regulation of DNA replication initiation involved in plasmid copy number maintenance Any process that decreases the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-04T02:56:29Z biological_process owl:Class GO:0009176 biolink:NamedThing pyrimidine deoxyribonucleoside monophosphate metabolic process The chemical reactions and pathways involving pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside monophosphate metabolism biological_process owl:Class GO:0010191 biolink:NamedThing mucilage metabolic process The chemical reactions and pathways involving mucilage, a gelatinous substance secreted by plants. tmpzr1t_l9r_go_relaxed.owl mucilage metabolism biological_process owl:Class GO:0035151 biolink:NamedThing regulation of tube size, open tracheal system Ensuring that an epithelial tube in an open tracheal system is of the correct length and diameter. Tracheal tubes undergo highly regulated tube-size increases during development, expanding up to 40 times their initial size by the end of larval life. Tube size appears to be controlled by regulation of apical membrane expansion and secretion, rather than by changes in cell number, size or shape. tmpzr1t_l9r_go_relaxed.owl regulation of tracheal tube size biological_process owl:Class GO:0060593 biolink:NamedThing Wnt signaling pathway involved in mammary gland specification The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of a cell in the epidermis resulting in the formation of the mammary line. The mammary line is a ridge of epidermal cells that will form the mammary placodes. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in mammary gland specification|Wnt receptor signaling pathway involved in mammary gland specification|Wnt-activated signaling pathway involved in mammary gland specification dph 2009-05-13T09:41:37Z biological_process owl:Class GO:0033196 biolink:NamedThing tryparedoxin peroxidase activity Catalysis of the reaction: tryparedoxin + hydrogen peroxide = tryparedoxin disulfide + H2O. tmpzr1t_l9r_go_relaxed.owl TXNPx activity MetaCyc:1.11.1.15-RXN molecular_function owl:Class GO:0102780 biolink:NamedThing sitosterol hydroxylase activity Catalysis of the reaction: H+ + sitosterol + O2 + NADPH <=> (22alpha)-hydroxy-sitosterol + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7876 molecular_function owl:Class GO:0140319 biolink:NamedThing receptor decoy activity Recognizing, binding and sequestering a specific receptor ligand to prevent it from binding to its regular receptor. tmpzr1t_l9r_go_relaxed.owl decoy receptor|decoy death receptor activity pg 2019-04-02T10:57:46Z GO:0005040 molecular_function owl:Class GO:0061365 biolink:NamedThing positive regulation of triglyceride lipase activity Any process that increases the activity of triglyceride lipase. tmpzr1t_l9r_go_relaxed.owl positive regulation of TAG activity dph 2010-10-15T08:27:22Z biological_process owl:Class GO:0090013 biolink:NamedThing regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation Any process that modulates the frequency, rate or extent of any TGF-beta receptor signaling pathway that contributes to the formation of the primitive streak. tmpzr1t_l9r_go_relaxed.owl regulation of transforming growth factor beta receptor signalling pathway involved in primitive streak formation tb 2009-07-29T10:54:44Z biological_process owl:Class GO:1902655 biolink:NamedThing aromatic primary alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic primary alcohol. tmpzr1t_l9r_go_relaxed.owl aromatic primary alcohol formation|aromatic primary alcohol synthesis|aromatic primary alcohol biosynthesis|aromatic primary alcohol anabolism tt 2014-01-22T10:47:30Z biological_process owl:Class GO:1902654 biolink:NamedThing aromatic primary alcohol metabolic process The chemical reactions and pathways involving aromatic primary alcohol. tmpzr1t_l9r_go_relaxed.owl aromatic primary alcohol metabolism tt 2014-01-22T10:47:21Z biological_process owl:Class GO:0032769 biolink:NamedThing negative regulation of monooxygenase activity Any process that stops or reduces the activity of a monooxygenase. tmpzr1t_l9r_go_relaxed.owl down-regulation of monooxygenase activity|inhibition of monooxygenase activity|down regulation of monooxygenase activity|downregulation of monooxygenase activity biological_process owl:Class GO:0033072 biolink:NamedThing vancomycin biosynthetic process The chemical reactions and pathways leading to the formation of vancomycin, (3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid, a complex glycopeptide from Streptomyces orientalis that inhibits a specific step in the synthesis of the peptidoglycan layer in Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl vancomycin formation|vancomycin anabolism|vancomycin synthesis|vancomycin biosynthesis biological_process owl:Class GO:0034571 biolink:NamedThing 4'-(2-hydroxyisopropyl)phenylurea amidohydrolase activity Catalysis of the reaction: 4'-(2-hydroxyisopropyl)phenylurea + H2O = 4'-(2-hydroxyisopropyl)phenylaniline + carbamic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0895 molecular_function owl:Class GO:0031683 biolink:NamedThing G-protein beta/gamma-subunit complex binding Binding to a complex of G-protein beta/gamma subunits. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030906 biolink:NamedThing retromer, cargo-selective complex The trimeric subcomplex of the retromer, believed to be closely associated with the membrane. This trimeric complex is responsible for recognizing and binding to cargo molecules. The complex comprises three Vps proteins in both yeast and mammalian cells: Vps35p, Vps29p, and Vps26p in yeast, and VPS35, VPS29 and VPS26A or VPS26B in mammals. tmpzr1t_l9r_go_relaxed.owl retromer CSC|retromer complex, inner shell|retromer, cargo recognition complex|cargo-selective retromer subcomplex|retromer, CRC cellular_component owl:Class GO:0046126 biolink:NamedThing pyrimidine deoxyribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside formation|pyrimidine deoxyribonucleoside biosynthesis|pyrimidine deoxyribonucleoside anabolism|pyrimidine deoxyribonucleoside synthesis biological_process owl:Class GO:0046134 biolink:NamedThing pyrimidine nucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside synthesis|pyrimidine nucleoside anabolism|pyrimidine nucleoside formation|pyrimidine nucleoside biosynthesis biological_process owl:Class GO:0051236 biolink:NamedThing establishment of RNA localization The directed movement of RNA to a specific location. tmpzr1t_l9r_go_relaxed.owl RNA positioning|RNA recruitment|establishment of RNA localisation biological_process owl:Class GO:0042997 biolink:NamedThing negative regulation of Golgi to plasma membrane protein transport Any process that stops, prevents, or reduces the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of Golgi to plasma membrane protein transport|downregulation of Golgi to plasma membrane protein transport|inhibition of Golgi to plasma membrane protein transport|down regulation of Golgi to plasma membrane protein transport biological_process owl:Class GO:1903197 biolink:NamedThing positive regulation of L-dopa biosynthetic process Any process that activates or increases the frequency, rate or extent of L-dopa biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of L-dopa synthesis|up-regulation of L-dopa formation|activation of L-dopa anabolism|up regulation of L-dopa biosynthesis|upregulation of L-dopa formation|upregulation of L-dopa biosynthetic process|up-regulation of L-dopa biosynthetic process|upregulation of L-dopa anabolism|up regulation of L-dopa synthesis|positive regulation of L-dopa formation|up regulation of L-dopa anabolism|up-regulation of L-dopa biosynthesis|upregulation of L-dopa biosynthesis|activation of L-dopa biosynthesis|up regulation of L-dopa formation|activation of L-dopa synthesis|positive regulation of L-dopa biosynthesis|positive regulation of L-dopa synthesis|up regulation of L-dopa biosynthetic process|activation of L-dopa biosynthetic process|positive regulation of L-dopa anabolism|activation of L-dopa formation|up-regulation of L-dopa synthesis|up-regulation of L-dopa anabolism bf 2014-07-21T09:12:49Z biological_process owl:Class GO:0035307 biolink:NamedThing positive regulation of protein dephosphorylation Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein. tmpzr1t_l9r_go_relaxed.owl upregulation of protein amino acid dephosphorylation|up-regulation of protein amino acid dephosphorylation|up regulation of protein amino acid dephosphorylation|stimulation of protein amino acid dephosphorylation|positive regulation of protein amino acid dephosphorylation|activation of protein amino acid dephosphorylation biological_process owl:Class GO:0106408 biolink:NamedThing diadenylate cyclase activity Catalysis of the reaction: 2 ATP = 3',3'-c-di-AMP + 2 diphosphate. tmpzr1t_l9r_go_relaxed.owl cyclic-di-AMP synthase EC:2.7.7.85|RHEA:35655|MetaCyc:RXN-14338 hjd 2021-10-29 14:53:01+00:00 molecular_function owl:Class GO:0090266 biolink:NamedThing regulation of mitotic cell cycle spindle assembly checkpoint Any process that modulates the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:06:37Z biological_process owl:Class GO:0005324 biolink:NamedThing long-chain fatty acid transporter activity Enables the transfer of long-chain fatty acids from one side of a membrane to the other. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-434381|Reactome:R-HSA-2046087|Reactome:R-HSA-390393|Reactome:R-HSA-5684043|Reactome:R-HSA-2046093|Reactome:R-HSA-382575 GO:0008562|GO:0005325 molecular_function owl:Class GO:0033648 biolink:NamedThing host intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, as found in host cells, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host intracellular membrane-enclosed organelle cellular_component owl:Class GO:0033647 biolink:NamedThing host intracellular organelle Organized structure of distinctive morphology and function, occurring within the host cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034760 biolink:NamedThing negative regulation of iron ion transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of iron ions from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl inhibition of transmembrane iron ion transport|negative regulation of transmembrane iron ion transport|downregulation of transmembrane iron ion transport|negative regulation of transmembrane iron transport|down regulation of transmembrane iron ion transport|negative regulation of iron ion membrane transport|down-regulation of transmembrane iron ion transport biological_process owl:Class GO:0050877 biolink:NamedThing nervous system process A organ system process carried out by any of the organs or tissues of neurological system. tmpzr1t_l9r_go_relaxed.owl pan-neural process|neurological system process|neurophysiological process https://github.com/geneontology/go-ontology/issues/13824 biological_process owl:Class GO:2000044 biolink:NamedThing negative regulation of cardiac cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac cell fate specification. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-19T09:01:10Z biological_process owl:Class GO:0003307 biolink:NamedThing regulation of Wnt signaling pathway involved in heart development Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt-activated signaling pathway involved in heart development|regulation of Wnt receptor signalling pathway involved in heart development|regulation of Wnt receptor signaling pathway involved in heart development dph 2009-10-22T12:32:10Z biological_process owl:Class GO:0032938 biolink:NamedThing negative regulation of translation in response to oxidative stress Any process that stops, prevents, or reduces the frequency, rate or extent of translation as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061757 biolink:NamedThing leukocyte adhesion to arterial endothelial cell The attachment of a leukocyte to an arterial endothelial cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl dph 2016-02-29T16:49:38Z biological_process owl:Class GO:1905322 biolink:NamedThing positive regulation of mesenchymal stem cell migration Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell migration. tmpzr1t_l9r_go_relaxed.owl upregulation of mesenchymal stem cell migration|up regulation of mesenchymal stem cell migration|activation of mesenchymal stem cell migration|up-regulation of mesenchymal stem cell migration sl 2016-07-15T22:19:29Z biological_process owl:Class GO:1901846 biolink:NamedThing positive regulation of cell communication by electrical coupling involved in cardiac conduction Any process that activates or increases the frequency, rate or extent of cell communication by electrical coupling involved in cardiac conduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell communication by electrical coupling involved in cardiac conduction|up regulation of cell communication by electrical coupling involved in cardiac conduction|upregulation of cell communication by electrical coupling involved in cardiac conduction|activation of cell communication by electrical coupling involved in cardiac conduction rl 2013-01-24T19:15:49Z biological_process owl:Class GO:0071106 biolink:NamedThing adenosine 3',5'-bisphosphate transmembrane transport The process in which adenosine 3',5'-bisphosphate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl adenosine 3',5'-diphosphate transport|adenosine 3',5'-bisphosphate membrane transport|adenosine 3'-phosphate-5'-phosphate transmembrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-11-12T10:40:49Z biological_process owl:Class GO:0072530 biolink:NamedThing purine-containing compound transmembrane transport The process in which a purine-containing compound is transported across a membrane. A purine-containing compound is any compound that contains purine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl purine-containing compound membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2011-01-05T01:45:14Z biological_process owl:Class GO:0070490 biolink:NamedThing protein pupylation The process in which a Pup protein is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of Pup and the epsilon-amino group of a lysine residue of the target protein. tmpzr1t_l9r_go_relaxed.owl Pup-protein conjugation|pupylation biological_process owl:Class GO:1901217 biolink:NamedThing regulation of holin activity Any process that modulates the frequency, rate or extent of holin activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-06T10:47:38Z biological_process owl:Class GO:0098614 biolink:NamedThing hydrogen selenide methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + hydrogen selenide => S-adenosyl-L-homocysteine + methaneselenol. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408536 molecular_function owl:Class GO:0000162 biolink:NamedThing tryptophan biosynthetic process The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. tmpzr1t_l9r_go_relaxed.owl tryptophan formation|tryptophan anabolism|aromatic amino acid family biosynthetic process, anthranilate pathway|tryptophan biosynthesis|tryptophan synthesis MetaCyc:TRPSYN-PWY GO:0009096 biological_process owl:Class GO:0018817 biolink:NamedThing 2-oxo-hept-3-ene-1,7-dioate hydratase activity Catalysis of the reaction: cis-2-oxohept-3-ene-1,7-dioate + H2O = 2,4-dihydroxy-hept-trans-2-ene-1,7-dioate. tmpzr1t_l9r_go_relaxed.owl 2-oxo-hepta-3-ene-1,7-dioate hydratase activity|2-oxo-hepta-3-ene-1,7-dioic acid hydratase activity|HpaH MetaCyc:HYDROXYHEPTA-DIENEDIOATE-HYDROXY-RXN|RHEA:42072|UM-BBD_reactionID:r0369 molecular_function owl:Class GO:0003151 biolink:NamedThing outflow tract morphogenesis The process in which the anatomical structures of the outflow tract are generated and organized. The outflow tract is the portion of the heart through which blood flows into the arteries. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T07:59:24Z biological_process owl:Class GO:1903671 biolink:NamedThing negative regulation of sprouting angiogenesis Any process that stops, prevents or reduces the frequency, rate or extent of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of sprouting angiogenesis|inhibition of sprouting angiogenesis|downregulation of sprouting angiogenesis|down regulation of sprouting angiogenesis pga 2014-11-27T10:10:59Z biological_process owl:Class GO:0019101 biolink:NamedThing female somatic sex determination The determination of sex and sexual phenotypes in a female organism's soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042733 biolink:NamedThing embryonic digit morphogenesis The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. A digit is one of the terminal divisions of an appendage, such as a finger or toe. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903422 biolink:NamedThing negative regulation of synaptic vesicle recycling Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle recycling. tmpzr1t_l9r_go_relaxed.owl down-regulation of synaptic vesicle recycling|inhibition of synaptic vesicle recycling|down regulation of synaptic vesicle recycling|negative regulation of kiss-and-run synaptic vesicle recycling|inhibition of kiss-and-run synaptic vesicle recycling|down-regulation of kiss-and-run synaptic vesicle recycling|down regulation of kiss-and-stay synaptic vesicle recycling|downregulation of synaptic vesicle recycling|downregulation of kiss-and-run synaptic vesicle recycling|down-regulation of kiss-and-stay synaptic vesicle recycling|down regulation of kiss-and-run synaptic vesicle recycling|inhibition of kiss-and-stay synaptic vesicle recycling|negative regulation of kiss-and-stay synaptic vesicle recycling|downregulation of kiss-and-stay synaptic vesicle recycling An example of this is mouse LRRK2 (Q5S006) in PMID:21307259 inferred from mutant phenotype pad 2014-09-09T15:27:59Z biological_process owl:Class GO:0071405 biolink:NamedThing cellular response to methanol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methanol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T02:54:44Z biological_process owl:Class GO:0045820 biolink:NamedThing negative regulation of glycolytic process Any process that stops, prevents, or reduces the frequency, rate or extent of glycolysis. tmpzr1t_l9r_go_relaxed.owl down-regulation of glycolysis|down regulation of glycolysis|downregulation of glycolysis|inhibition of glycolysis biological_process owl:Class GO:0003162 biolink:NamedThing atrioventricular node development The process whose specific outcome is the progression of the atrioventricular (AV) node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving electrical signals from the sinoatrial (SA) node and relaying them to the His-Purkinje system. tmpzr1t_l9r_go_relaxed.owl AV node development dph 2009-10-01T02:05:13Z biological_process owl:Class GO:0007538 biolink:NamedThing primary sex determination The sex determination process that results in the initial specification of sexual status of an individual organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061645 biolink:NamedThing endocytic patch The part of the cell cortex consisting of an aggregation of proteins that will give rise to an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl dph 2014-09-02T09:23:38Z cellular_component owl:Class GO:1904821 biolink:NamedThing chloroplast disassembly The disaggregation of a chloroplast into its constituent components. tmpzr1t_l9r_go_relaxed.owl chloroplast degradation The disaggregation of a chloroplast into its constituent components. lr 2015-11-19T00:41:18Z biological_process owl:Class GO:0051344 biolink:NamedThing negative regulation of cyclic-nucleotide phosphodiesterase activity Any process that stops or reduces the rate of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphodiesterase inhibitor|3',5'-cyclic-AMP phosphodiesterase inhibitor|cAMP phosphodiesterase inhibitor|negative regulation of 3',5' cyclic nucleotide phosphodiesterase activity|3',5' cyclic nucleotide phosphodiesterase inhibitor|negative regulation of cGMP phosphodiesterase activity|negative regulation of 3',5'-cyclic-AMP phosphodiesterase activity|downregulation of cyclic nucleotide phosphodiesterase activity|down-regulation of cyclic nucleotide phosphodiesterase activity|negative regulation of cyclic nucleotide phosphodiesterase activity|down regulation of cyclic nucleotide phosphodiesterase activity|inhibition of cyclic nucleotide phosphodiesterase activity|negative regulation of cAMP phosphodiesterase activity biological_process owl:Class GO:0051342 biolink:NamedThing regulation of cyclic-nucleotide phosphodiesterase activity Any process that modulates the frequency, rate or extent of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphodiesterase regulator|regulation of 3',5'-cyclic-AMP phosphodiesterase activity|regulation of cyclic nucleotide phosphodiesterase activity|3',5' cyclic nucleotide phosphodiesterase regulator|cAMP phosphodiesterase regulator|3',5'-cyclic-AMP phosphodiesterase regulator|regulation of cAMP phosphodiesterase activity|regulation of 3',5' cyclic nucleotide phosphodiesterase activity|regulation of cGMP phosphodiesterase activity biological_process owl:Class GO:0031777 biolink:NamedThing type 1 melanin-concentrating hormone receptor binding Binding to a type 1 melanin-concentrating hormone receptor. tmpzr1t_l9r_go_relaxed.owl type 1 melanin-concentrating hormone receptor ligand molecular_function owl:Class GO:0031776 biolink:NamedThing melanin-concentrating hormone receptor binding Binding to a melanin-concentrating hormone receptor. tmpzr1t_l9r_go_relaxed.owl melanin-concentrating hormone receptor ligand molecular_function owl:Class GO:0032618 biolink:NamedThing interleukin-15 production The appearance of interleukin-15 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-15 secretion|interleukin-15 biosynthetic process|IL-15 production GO:0072613|GO:0042233 biological_process owl:Class GO:0046578 biolink:NamedThing regulation of Ras protein signal transduction Any process that modulates the frequency, rate or extent of Ras protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904143 biolink:NamedThing positive regulation of carotenoid biosynthetic process Any process that activates or increases the frequency, rate or extent of carotenoid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of carotenoid biosynthetic process|positive regulation of carotenoid synthesis|positive regulation of carotenoid formation|up-regulation of carotenoid biosynthesis|up regulation of carotenoid anabolism|positive regulation of carotenoid biosynthesis|upregulation of carotenoid anabolism|up regulation of carotenoid biosynthesis|activation of carotenoid biosynthetic process|upregulation of carotenoid formation|activation of carotenoid synthesis|up-regulation of carotenoid anabolism|upregulation of carotenoid synthesis|up-regulation of carotenoid synthesis|positive regulation of carotenoid anabolism|up regulation of carotenoid formation|up regulation of carotenoid synthesis|upregulation of carotenoid biosynthetic process|activation of carotenoid anabolism|upregulation of carotenoid biosynthesis|up-regulation of carotenoid formation|activation of carotenoid biosynthesis|activation of carotenoid formation|up regulation of carotenoid biosynthetic process tb 2015-04-13T19:39:19Z biological_process owl:Class GO:0060177 biolink:NamedThing regulation of angiotensin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving angiotensin. tmpzr1t_l9r_go_relaxed.owl regulation of angiotensin metabolism biological_process owl:Class GO:0014002 biolink:NamedThing astrocyte development The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function. tmpzr1t_l9r_go_relaxed.owl astrocyte cell development biological_process owl:Class GO:0062100 biolink:NamedThing positive regulation of programmed necrotic cell death Any process that increases the frequency, rate or extent of programmed necrotic cell death. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-29T15:08:35Z biological_process owl:Class GO:0031418 biolink:NamedThing L-ascorbic acid binding Binding to L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. tmpzr1t_l9r_go_relaxed.owl vitamin C binding|L-ascorbate binding molecular_function owl:Class GO:0007309 biolink:NamedThing oocyte axis specification The establishment, maintenance and elaboration of an axis in the oocyte. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte axis determination GO:0048111 biological_process owl:Class GO:0032342 biolink:NamedThing aldosterone biosynthetic process The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002259 biolink:NamedThing endothelial cell activation within high endothelial venule involved in immune response A change in the morphology or behavior of an endothelial cell within a high endothelial venule resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl endothelial cell activation within high endothelial venule during immune response biological_process owl:Class GO:0002264 biolink:NamedThing endothelial cell activation involved in immune response A change in the morphology or behavior of an endothelial cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl endothelial cell activation during immune response biological_process owl:Class GO:0030194 biolink:NamedThing positive regulation of blood coagulation Any process that activates or increases the frequency, rate or extent of blood coagulation. tmpzr1t_l9r_go_relaxed.owl up regulation of blood coagulation|stimulation of blood coagulation|activation of blood coagulation|upregulation of blood coagulation|up-regulation of blood coagulation biological_process owl:Class GO:0071966 biolink:NamedThing fungal-type cell wall polysaccharide metabolic process The chemical reactions and pathways involving the polysaccharides which make up the fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-14T11:56:47Z biological_process owl:Class GO:0075260 biolink:NamedThing regulation of spore-bearing organ development Any process that modulates the frequency, rate or extent of spore-bearing organ development, a process in which hyphae grow into special aggregates called fruiting bodies that produce new spores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904078 biolink:NamedThing positive regulation of estrogen biosynthetic process Any process that activates or increases the frequency, rate or extent of estrogen biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of oestrogen biosynthesis|up-regulation of estrogen formation|up regulation of estrogen biosynthesis|up regulation of estrogen biosynthetic process|upregulation of estrogen biosynthesis|positive regulation of estrogen biosynthesis|upregulation of oestrogen biosynthetic process|up-regulation of estrogen synthesis|up regulation of estrogen synthesis|positive regulation of oestrogen biosynthesis|up-regulation of estrogen anabolism|upregulation of estrogen biosynthetic process|activation of oestrogen biosynthetic process|positive regulation of estrogen anabolism|upregulation of estrogen anabolism|activation of estrogen biosynthesis|upregulation of oestrogen biosynthesis|activation of estrogen biosynthetic process|activation of oestrogen biosynthesis|upregulation of estrogen synthesis|positive regulation of estrogen synthesis|activation of estrogen anabolism|positive regulation of estrogen formation|up-regulation of oestrogen biosynthetic process|activation of estrogen formation|up-regulation of estrogen biosynthetic process|upregulation of estrogen formation|activation of estrogen synthesis|up regulation of estrogen formation|positive regulation of oestrogen biosynthetic process|up-regulation of estrogen biosynthesis|up regulation of oestrogen biosynthesis|up regulation of oestrogen biosynthetic process|up regulation of estrogen anabolism tb 2015-03-20T16:56:26Z biological_process owl:Class GO:0046856 biolink:NamedThing phosphatidylinositol dephosphorylation The process of removing one or more phosphate groups from a phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl PtdInsP dephosphorylation|phosphatidylinositol phosphate dephosphorylation|PIP catabolism|phosphatidylinositol phosphate catabolic process|PtdInsP catabolism|phosphoinositide dephosphorylation GO:0046840 biological_process owl:Class GO:1903669 biolink:NamedThing positive regulation of chemorepellent activity Any process that activates or increases the frequency, rate or extent of chemorepellent activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of chemorepellant activity|up-regulation of chemorepellent activity|activation of chemorepellent activity|activation of chemorepellant activity|upregulation of chemorepellent activity|up regulation of chemorepellent activity|up regulation of chemorepellant activity|upregulation of chemorepellant activity|up-regulation of chemorepellant activity pf 2014-11-26T23:58:50Z biological_process owl:Class GO:0033055 biolink:NamedThing D-arginine metabolic process The chemical reactions and pathways involving D-arginine, the D-enantiomer of the amino acid arginine, i.e. (2R)-2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl D-arginine metabolism biological_process owl:Class GO:0006525 biolink:NamedThing arginine metabolic process The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl arginine metabolism Wikipedia:Arginine biological_process owl:Class GO:1904211 biolink:NamedThing membrane protein proteolysis involved in retrograde protein transport, ER to cytosol Any membrane protein proteolysis that is involved in retrograde protein transport, ER to cytosol. tmpzr1t_l9r_go_relaxed.owl intramembrane proteolysis involved in ERAD|membrane protein proteolysis involved in retrograde protein transport, endoplasmic reticulum to cytosol|intramembrane cleavage of ERAD substrate|membrane protein proteolysis involved in protein dislocation from ER|membrane protein proteolysis involved in protein retrotranslocation, ER to cytosol bf 2015-05-14T15:26:44Z biological_process owl:Class GO:0097035 biolink:NamedThing regulation of membrane lipid distribution Any process that modulates the proportions or spatial arrangement of lipids in a cellular membrane. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-08T02:01:19Z biological_process owl:Class GO:1905413 biolink:NamedThing regulation of dense core granule exocytosis Any process that modulates the frequency, rate or extent of dense core granule exocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of dense core vesicle exocytosis bf 2016-08-31T08:02:21Z biological_process owl:Class GO:0090659 biolink:NamedThing walking behavior The behavior of an organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg. tmpzr1t_l9r_go_relaxed.owl locomotor gait pattern tb 2015-08-27T16:34:28Z biological_process owl:Class GO:0000478 biolink:NamedThing endonucleolytic cleavage involved in rRNA processing Any endonucleolytic cleavage involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. Some endonucleolytic cleavages produce the mature end, while others are a step in the process of generating the mature end from the pre-rRNA. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage during rRNA processing biological_process owl:Class GO:2000697 biolink:NamedThing negative regulation of epithelial cell differentiation involved in kidney development Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-16T04:23:55Z biological_process owl:Class GO:0033255 biolink:NamedThing SAS acetyltransferase complex A protein complex that possesses histone acetyltransferase activity and links histone acetylation to the assembly of transcriptionally silent chromatin. In vitro, the complex acetylates lysine 16 of histone H4 and lysine 14 of histone H3, although the latter may not be relevant in vivo. The complex contains a catalytic subunit and at least two other subunits; in Saccharomyces, the catalytic subunit is Sas2p and additional subunits are Sas4p and Sas5p. tmpzr1t_l9r_go_relaxed.owl SAS-I complex cellular_component owl:Class GO:0032777 biolink:NamedThing Piccolo NuA4 histone acetyltransferase complex A heterotrimeric H4/H2A histone acetyltransferase complex with a substrate preference of chromatin over free histones. It contains a subset of the proteins found in the larger NuA4 histone acetyltransferase complex; for example, the S. cerevisiae complex contains Esa1p, Yng2p, and Epl1p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903529 biolink:NamedThing negative regulation of dCDP biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of dCDP biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of dCDP biosynthesis|down-regulation of dCDP biosynthetic process|inhibition of dCDP synthesis|downregulation of dCDP anabolism|inhibition of dCDP biosynthetic process|down-regulation of dCDP anabolism|negative regulation of dCDP synthesis|down regulation of dCDP synthesis|down regulation of dCDP formation|down regulation of dCDP biosynthesis|inhibition of dCDP formation|down regulation of dCDP anabolism|downregulation of dCDP formation|negative regulation of dCDP biosynthesis|inhibition of dCDP biosynthesis|down-regulation of dCDP biosynthesis|down regulation of dCDP biosynthetic process|downregulation of dCDP biosynthetic process|inhibition of dCDP anabolism|negative regulation of dCDP anabolism|down-regulation of dCDP synthesis|negative regulation of dCDP formation|down-regulation of dCDP formation|downregulation of dCDP synthesis al 2014-10-07T15:01:27Z biological_process owl:Class GO:1900398 biolink:NamedThing negative regulation of pyrimidine nucleotide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of pyrimidine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of pyrimidine nucleotide biosynthetic process|negative regulation of pyrimidine nucleotide biosynthesis|downregulation of pyrimidine nucleotide formation|down regulation of pyrimidine nucleotide formation|downregulation of pyrimidine nucleotide anabolism|negative regulation of pyrimidine nucleotide anabolism|downregulation of pyrimidine nucleotide synthesis|down-regulation of pyrimidine nucleotide formation|down-regulation of pyrimidine nucleotide synthesis|down regulation of pyrimidine nucleotide synthesis|down-regulation of pyrimidine nucleotide biosynthesis|downregulation of pyrimidine nucleotide biosynthesis|down-regulation of pyrimidine nucleotide anabolism|inhibition of pyrimidine nucleotide formation|inhibition of pyrimidine nucleotide anabolism|down regulation of pyrimidine nucleotide biosynthesis|downregulation of pyrimidine nucleotide biosynthetic process|inhibition of pyrimidine nucleotide biosynthetic process|inhibition of pyrimidine nucleotide biosynthesis|down-regulation of pyrimidine nucleotide biosynthetic process|inhibition of pyrimidine nucleotide synthesis|down regulation of pyrimidine nucleotide anabolism|negative regulation of pyrimidine nucleotide formation|negative regulation of pyrimidine nucleotide synthesis jh 2012-04-19T01:05:41Z biological_process owl:Class GO:0046895 biolink:NamedThing N-terminal peptidyl-isoleucine methylation The methylation of the N-terminal isoleucine of proteins to form the derivative N-methyl-L-isoleucine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0336 biological_process owl:Class GO:1903396 biolink:NamedThing negative regulation of secondary cell septum biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of secondary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of secondary cell septum biogenesis|inhibition of secondary cell septum biogenesis|down regulation of secondary cell septum biogenesis|downregulation of secondary cell septum biogenesis di 2014-08-29T21:42:26Z biological_process owl:Class GO:0047606 biolink:NamedThing hydroxynitrilase activity Catalysis of the reaction: a hydroxynitrile = cyanide + an aldehyde or ketone. tmpzr1t_l9r_go_relaxed.owl (S)-acetone-cyanohydrin lyase activity|acetone-cyanohydrin lyase activity|hydroxynitrile lyase activity|acetone-cyanohydrin acetone-lyase (cyanide-forming)|acetone-cyanohydrin acetone-lyase activity|oxynitrilase activity|alpha-hydroxynitrile lyase activity|2-hydroxyisobutyronitrile acetone-lyase (cyanide-forming)|acetone-cyanhydrin lyase activity|2-hydroxyisobutyronitrile acetone-lyase activity EC:4.1.2.47|MetaCyc:ACETONE-CYANHYDRIN-LYASE-RXN GO:0046991 molecular_function owl:Class GO:0034144 biolink:NamedThing negative regulation of toll-like receptor 4 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 4 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR4 signaling pathway|negative regulation of toll-like receptor 4 signalling pathway biological_process owl:Class GO:0032748 biolink:NamedThing positive regulation of interleukin-24 production Any process that activates or increases the frequency, rate, or extent of interleukin-24 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-24 production|positive regulation of IL-24 production|positive regulation of interleukin-24 biosynthetic process|activation of interleukin-24 production|upregulation of interleukin-24 production|up regulation of interleukin-24 production|up-regulation of interleukin-24 production GO:0045536 biological_process owl:Class GO:0030335 biolink:NamedThing positive regulation of cell migration Any process that activates or increases the frequency, rate or extent of cell migration. tmpzr1t_l9r_go_relaxed.owl activation of cell migration|stimulation of cell migration|up-regulation of cell migration|up regulation of cell migration|upregulation of cell migration biological_process owl:Class GO:1901332 biolink:NamedThing negative regulation of lateral root development Any process that stops, prevents or reduces the frequency, rate or extent of lateral root development. tmpzr1t_l9r_go_relaxed.owl downregulation of lateral root development|down-regulation of lateral root development|down regulation of lateral root development|inhibition of lateral root development tb 2012-09-01T00:58:37Z biological_process owl:Class GO:0005359 biolink:NamedThing low-affinity glucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + H(out)+ = glucose(in) + H(in)+. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl low-affinity hydrogen:glucose symporter activity|low-affinity hydrogen:glucose transporter activity|low-affinity hydrogen/glucose transporter activity molecular_function owl:Class GO:0070390 biolink:NamedThing transcription export complex 2 A protein complex that couples SAGA-dependent gene expression to mRNA export at the inner side of the nuclear pore complex (NPC). The TREX-2 complex is tethered to the inner side of the NPC via the nucleoporins Nup1 and Nup60; in S. cerevisiae it contains Sac3p, Thp1p, Sem1, Sus1p and Cdc31p. tmpzr1t_l9r_go_relaxed.owl TREX-2 complex|Sac3-Thp1-Sus1-Sem1-Cdc31 complex cellular_component owl:Class GO:0036259 biolink:NamedThing aerobic raffinose catabolic process The chemical reactions and pathways resulting in the breakdown of raffinose that occur in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic raffinose breakdown|aerobic raffinose catabolism|aerobic raffinose degradation bf 2012-06-15T01:14:51Z biological_process owl:Class GO:0034484 biolink:NamedThing raffinose catabolic process The chemical reactions and pathways resulting in the breakdown of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl raffinose degradation|raffinose catabolism|raffinose breakdown biological_process owl:Class GO:1902822 biolink:NamedThing regulation of late endosome to lysosome transport Any process that modulates the frequency, rate or extent of late endosome to lysosome transport. tmpzr1t_l9r_go_relaxed.owl regulation of prevacuolar compartment to lysosome transport pad 2014-03-31T10:08:38Z biological_process owl:Class GO:0009243 biolink:NamedThing O antigen biosynthetic process The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide. tmpzr1t_l9r_go_relaxed.owl O antigen synthesis|O antigen biosynthesis|O antigen anabolism|O antigen formation biological_process owl:Class GO:0046402 biolink:NamedThing O antigen metabolic process The chemical reactions and pathways involving the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide. tmpzr1t_l9r_go_relaxed.owl O antigen metabolism biological_process owl:Class GO:0023029 biolink:NamedThing MHC class Ib protein binding Binding to a major histocompatibility complex class Ib molecules. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0052897 biolink:NamedThing N8-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity Catalysis of the reaction: H(2)O + N(8)-acetylspermidine + O(2) = 1,3-diaminopropane + 4-acetamidobutanal + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl N(8)-acetylspermidine oxidase (propane-1,3-diamine-forming) activity KEGG_REACTION:R09075|MetaCyc:RXN-10463|RHEA:25972|EC:1.5.3.15 molecular_function owl:Class GO:0032499 biolink:NamedThing detection of peptidoglycan The series of events in which a peptidoglycan stimulus is received by a cell and converted into a molecular signal. Peptidoglycan is a bacterial cell wall macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905081 biolink:NamedThing positive regulation of cerebellar neuron development Any process that activates or increases the frequency, rate or extent of cerebellar neuron development. tmpzr1t_l9r_go_relaxed.owl upregulation of cerebellar neuron development|activation of cerebellar neuron development|up-regulation of cerebellar neuron development|up regulation of cerebellar neuron development hjd 2016-03-24T19:45:35Z biological_process owl:Class GO:0050432 biolink:NamedThing catecholamine secretion The regulated release of catecholamines by a cell. The catecholamines are a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046127 biolink:NamedThing pyrimidine deoxyribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside catabolism|pyrimidine deoxyribonucleoside degradation|pyrimidine deoxyribonucleoside breakdown biological_process owl:Class GO:0051318 biolink:NamedThing G1 phase The cell cycle 'gap' phase which is the interval between the completion of DNA segregation (usually by mitosis or meiosis) and the beginning of DNA synthesis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:G1_phase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1905472 biolink:NamedThing negative regulation of histone H3-K79 dimethylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K79 dimethylation. tmpzr1t_l9r_go_relaxed.owl down regulation of histone H3-K79 dimethylation|down regulation of histone H3 K79 dimethylation|down-regulation of histone H3 K79 dimethylation|down regulation of histone lysine H3 K79 dimethylation|negative regulation of histone H3 K79 dimethylation|downregulation of histone H3-K79 dimethylation|down-regulation of histone H3-K79 dimethylation|downregulation of histone H3 K79 dimethylation|down-regulation of histone lysine H3 K79 dimethylation|negative regulation of histone lysine H3 K79 dimethylation|inhibition of histone lysine H3 K79 dimethylation|inhibition of histone H3 K79 dimethylation|downregulation of histone lysine H3 K79 dimethylation|inhibition of histone H3-K79 dimethylation hbye 2016-09-21T15:27:10Z biological_process owl:Class GO:0046103 biolink:NamedThing inosine biosynthetic process The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs. tmpzr1t_l9r_go_relaxed.owl inosine synthesis|inosine anabolism|inosine formation|inosine biosynthesis biological_process owl:Class GO:0046128 biolink:NamedThing purine ribonucleoside metabolic process The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside metabolism biological_process owl:Class GO:0006867 biolink:NamedThing asparagine transport The directed movement of asparagine, alpha-aminosuccinamic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-asparagine transport biological_process owl:Class GO:0015968 biolink:NamedThing stringent response A specific global change in the metabolism of a bacterial cell (the downregulation of nucleic acid and protein synthesis, and the simultaneous upregulation of protein degradation and amino acid synthesis) as a result of starvation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Stringent_response biological_process owl:Class GO:2000387 biolink:NamedThing regulation of antral ovarian follicle growth Any process that modulates the frequency, rate or extent of antral ovarian follicle growth. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-16T04:53:43Z biological_process owl:Class GO:0005956 biolink:NamedThing protein kinase CK2 complex A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein. tmpzr1t_l9r_go_relaxed.owl casein kinase II complex Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:1903688 biolink:NamedThing positive regulation of border follicle cell migration Any process that activates or increases the frequency, rate or extent of border follicle cell migration. tmpzr1t_l9r_go_relaxed.owl activation of border follicle cell migration als 2014-12-01T13:41:19Z biological_process owl:Class GO:1900810 biolink:NamedThing helvolic acid metabolic process The chemical reactions and pathways involving helvolic acid. tmpzr1t_l9r_go_relaxed.owl Fumigacin metabolism|Fumigacin metabolic process|helvolic acid metabolism di 2012-06-04T10:02:28Z biological_process owl:Class GO:0010390 biolink:NamedThing histone monoubiquitination The modification of histones by addition of a single ubiquitin group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006513 biolink:NamedThing protein monoubiquitination Addition of a single ubiquitin group to a protein. tmpzr1t_l9r_go_relaxed.owl protein monoubiquitinylation|protein monoubiquitylation biological_process owl:Class GO:0003285 biolink:NamedThing septum secundum development The progression of the septum secundum over time, from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:21:13Z biological_process owl:Class GO:0042171 biolink:NamedThing lysophosphatidic acid acyltransferase activity Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidic acid to form phosphatidic acid. tmpzr1t_l9r_go_relaxed.owl LPAAT activity molecular_function owl:Class GO:0071617 biolink:NamedThing lysophospholipid acyltransferase activity Catalysis of the transfer of acyl groups from an acyl-CoA to a lysophospholipid. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T04:53:37Z molecular_function owl:Class GO:0060117 biolink:NamedThing auditory receptor cell development The process whose specific outcome is the progression of an auditory receptor cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl auditory hair cell development biological_process owl:Class GO:0060119 biolink:NamedThing inner ear receptor cell development The process whose specific outcome is the progression of an inner ear receptor cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl inner ear hair cell development biological_process owl:Class GO:0035094 biolink:NamedThing response to nicotine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901340 biolink:NamedThing negative regulation of store-operated calcium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of store-operated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl down regulation of store-operated calcium channel activity|down-regulation of store-operated calcium channel activity|inhibition of store-operated calcium channel activity|downregulation of store-operated calcium channel activity pr 2012-09-03T14:24:21Z biological_process owl:Class GO:1901020 biolink:NamedThing negative regulation of calcium ion transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion transmembrane transporter activity|inhibition of calcium ion transmembrane transporter activity|downregulation of calcium ion transmembrane transporter activity|down regulation of calcium ion transmembrane transporter activity rl 2012-06-15T07:54:32Z biological_process owl:Class GO:2000791 biolink:NamedThing negative regulation of mesenchymal cell proliferation involved in lung development Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal cell proliferation involved in lung development. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-24T01:53:53Z biological_process owl:Class GO:0008809 biolink:NamedThing carnitine racemase activity Catalysis of the reaction: D-carnitine = L-carnitine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:CARNRACE-RXN molecular_function owl:Class GO:0003177 biolink:NamedThing pulmonary valve development The progression of the pulmonary valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:19:44Z biological_process owl:Class GO:1905314 biolink:NamedThing semi-lunar valve development The process whose specific outcome is the progression of a semi-lunar valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl semilunar valves development|semilunar valve development rl 2016-07-11T17:50:44Z biological_process owl:Class GO:0097526 biolink:NamedThing spliceosomal tri-snRNP complex A spliceosomal snRNP complex that is formed by the association of the U4/U6 (or U4atac/U6atac) snRNP with the U5 snRNP. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-18T15:58:47Z cellular_component owl:Class GO:1902093 biolink:NamedThing positive regulation of flagellated sperm motility Any process that activates or increases the frequency, rate or extent of flagellated sperm motility. tmpzr1t_l9r_go_relaxed.owl upregulation of sperm movement|up regulation of sperm movement|upregulation of sperm motility|activation of sperm motility|activation of sperm movement|up-regulation of sperm motility|up regulation of sperm motility|positive regulation of sperm movement|up-regulation of sperm movement|positive regulation of sperm motility bf 2013-04-29T09:15:25Z biological_process owl:Class GO:0051582 biolink:NamedThing positive regulation of neurotransmitter uptake Any process that activates or increases the frequency, rate or extent of the directed movement of a neurotransmitter into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl up regulation of neurotransmitter uptake|activation of neurotransmitter uptake|stimulation of neurotransmitter uptake|up-regulation of neurotransmitter uptake|positive regulation of neurotransmitter import|upregulation of neurotransmitter uptake biological_process owl:Class GO:1904962 biolink:NamedThing plastid to vacuole vesicle-mediated transport The vesicle-mediated and directed movement of substances from plastid to vacuole. tmpzr1t_l9r_go_relaxed.owl plastid to vacuolar carboxypeptidase Y vesicle-mediated transport tb 2016-02-10T00:14:48Z biological_process owl:Class GO:1900738 biolink:NamedThing positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway Any process that activates or increases the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|up regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|positive regulation of PLC-activating GPCR signaling pathway|positive regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|up regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|positive regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|up-regulation of PLC-activating GPCR signaling pathway|activation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|activation of PLC-activating GPCR signaling pathway|up-regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|activation of phospholipase C-activating dopamine receptor signaling pathway|activation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|positive regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of phospholipase C-activating dopamine receptor signaling pathway|upregulation of PLC-activating GPCR signaling pathway|activation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|activation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|upregulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|upregulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|upregulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|up regulation of phospholipase C-activating G-protein coupled receptor signaling pathway|activation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|up regulation of phospholipase C-activating dopamine receptor signaling pathway|upregulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|up regulation of PLC-activating GPCR signaling pathway|upregulation of phospholipase C-activating G-protein coupled receptor signaling pathway|upregulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|activation of phospholipase C-activating G-protein coupled receptor signaling pathway|positive regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|activation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|up-regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|up regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|up regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|up regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|upregulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|upregulation of phospholipase C-activating dopamine receptor signaling pathway|positive regulation of phospholipase C-activating dopamine receptor signaling pathway|positive regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|up-regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating) rl 2012-05-28T10:07:56Z biological_process owl:Class GO:0045752 biolink:NamedThing positive regulation of Toll signaling pathway Any process that activates or increases the frequency, rate or extent of the Tl signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of Toll signaling pathway|stimulation of Toll signaling pathway|positive regulation of Tl signaling pathway|up-regulation of Toll signaling pathway|up regulation of Toll signaling pathway|upregulation of Toll signaling pathway|positive regulation of Tl signalling pathway biological_process owl:Class GO:0008592 biolink:NamedThing regulation of Toll signaling pathway Any process that modulates the frequency, rate or extent of the Tl signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Tl signalling pathway|regulation of Toll signalling pathway|regulation of Tl signaling pathway biological_process owl:Class GO:0060125 biolink:NamedThing negative regulation of growth hormone secretion Any process that decreases or stops the frequency, rate or extent of the regulated release of growth hormone from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905421 biolink:NamedThing regulation of plant organ morphogenesis Any process that modulates the frequency, rate or extent of plant organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2016-09-06T23:00:14Z biological_process owl:Class GO:0045488 biolink:NamedThing pectin metabolic process The chemical reactions and pathways involving pectin, a group of galacturonic acid-containing, water-soluble colloidal carbohydrates of high molecular weight and of net negative charge. tmpzr1t_l9r_go_relaxed.owl pectin metabolism biological_process owl:Class GO:0036254 biolink:NamedThing cellular response to amiloride Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amiloride stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-15T01:06:16Z biological_process owl:Class GO:1905579 biolink:NamedThing negative regulation of ERBB3 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of ERBB3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of ERBB3 signaling pathway|down-regulation of ERBB3 signaling pathway|down regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|negative regulation of ERBB3 signalling pathway|inhibition of ERBB3 signalling pathway|downregulation of ERBB3 signaling pathway|downregulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|inhibition of receptor tyrosine-protein kinase erbB-3 signaling pathway|negative regulation of HER3 signaling pathway|downregulation of HER3 signaling pathway|downregulation of ERBB3 signalling pathway|inhibition of HER3 signaling pathway|negative regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|down regulation of ERBB3 signalling pathway|down-regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|inhibition of ERBB3 signaling pathway|down regulation of HER3 signaling pathway|down-regulation of HER3 signaling pathway|down-regulation of ERBB3 signalling pathway als 2016-10-19T11:47:03Z biological_process owl:Class GO:0030809 biolink:NamedThing negative regulation of nucleotide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleotide synthesis|inhibition of nucleotide biosynthetic process|negative regulation of nucleotide anabolism|negative regulation of nucleotide biosynthesis|down-regulation of nucleotide biosynthetic process|downregulation of nucleotide biosynthetic process|negative regulation of nucleotide formation|down regulation of nucleotide biosynthetic process biological_process owl:Class GO:0045980 biolink:NamedThing negative regulation of nucleotide metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleotides. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleotide metabolism|down regulation of nucleotide metabolic process|down-regulation of nucleotide metabolic process|inhibition of nucleotide metabolic process|downregulation of nucleotide metabolic process biological_process owl:Class GO:0060142 biolink:NamedThing regulation of syncytium formation by plasma membrane fusion Any process that modulates the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035287 biolink:NamedThing head segmentation Partitioning the insect head anlage into a fixed number of segmental units. The number of segments composing the insect head has long been a subject of debate, but it is generally agreed that there are 6 or 7 segments. From anterior to posterior the head segments are the procephalic segments (labral, (ocular), antennal and intercalary) and the gnathal segments (mandibular, maxillary and labial). tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'head segment ; FBbt:00000006' and its children. biological_process owl:Class GO:0097229 biolink:NamedThing sperm end piece The short tip of the sperm flagellum, adjacent to the sperm principal piece and furthest from the sperm head, which contains only the axoneme surrounded by the plasma membrane. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:29:04Z cellular_component owl:Class GO:0015100 biolink:NamedThing vanadium ion transmembrane transporter activity Enables the transfer of vanadium (V) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047292 biolink:NamedThing trihydroxypterocarpan dimethylallyltransferase activity Catalysis of the reaction: (6AS,11AS)-3,6A,9-trihydroxypterocarpan + dimethylallyl-pyrophosphate = glyceollin + diphosphate. tmpzr1t_l9r_go_relaxed.owl dimethylallyl-diphosphate:(6aS,11aS)-3,6a,9-trihydroxypterocarpan dimethyltransferase activity|dimethylallyl-diphosphate:(6aS,11aS)-3,6a,9-trihydroxypterocarpan dimethylallyltransferase activity|dimethylallylpyrophosphate:trihydroxypterocarpan dimethylallyl transferase activity|dimethylallylpyrophosphate:3,6a,9-trihydroxypterocarpan dimethylallyltransferase activity MetaCyc:2.5.1.36-RXN|EC:2.5.1.36 molecular_function owl:Class GO:0010310 biolink:NamedThing regulation of hydrogen peroxide metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen peroxide metabolism biological_process owl:Class GO:0071794 biolink:NamedThing CAP-Gly domain binding Binding to a CAP-Gly domain of a protein. The CAP_Gly domain is a conserved, glycine-rich domain of about 42 residues found in some cytoskeleton-associated proteins, and features a novel protein fold containing three beta-sheets. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-02T02:02:53Z molecular_function owl:Class GO:0002435 biolink:NamedThing immune complex clearance by erythrocytes The process of immune complex clearance by erythrocytes. The process often starts with binding of complement receptor 1 (CR1) on the surface of erythrocytes to a complement coated immune complex. The complex bound to erythrocyte CR1 is then transported to the liver or spleen where it is presented to phagocytes. The process ends when the complex is removed from CR1, allowing the erythrocyte to return to general circulation. tmpzr1t_l9r_go_relaxed.owl immune complex clearance by RBCs|immune complex clearance by red blood cells https://github.com/geneontology/go-ontology/issues/19884 Wikipedia:Immune_complex biological_process owl:Class GO:0002434 biolink:NamedThing immune complex clearance A process directed at removing immune complexes from the body. Immune complexes are clusters of antibodies bound to antigen, to which complement may also be fixed, and which may precipitate or remain in solution. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050434 biolink:NamedThing positive regulation of viral transcription Any process that activates or increases the frequency, rate or extent of viral transcription. tmpzr1t_l9r_go_relaxed.owl up regulation of viral transcription|activation of viral transcription|stimulation of viral transcription|up-regulation of viral transcription|upregulation of viral transcription biological_process owl:Class GO:1901308 biolink:NamedThing regulation of sterol regulatory element binding protein cleavage Any process that modulates the frequency, rate or extent of sterol regulatory element binding protein cleavage. tmpzr1t_l9r_go_relaxed.owl regulation of SREBP cleavage bf 2012-08-21T16:43:12Z biological_process owl:Class GO:1903447 biolink:NamedThing geraniol catabolic process The chemical reactions and pathways resulting in the breakdown of geraniol. tmpzr1t_l9r_go_relaxed.owl geraniol degradation|geraniol breakdown|geraniol catabolism di 2014-09-19T08:18:44Z biological_process owl:Class GO:1903708 biolink:NamedThing positive regulation of hemopoiesis Any process that activates or increases the frequency, rate or extent of hemopoiesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of hemopoiesis|up regulation of blood cell formation|positive regulation of blood cell formation|up-regulation of haemopoiesis|positive regulation of haemopoiesis|up regulation of haemopoiesis|upregulation of blood cell biosynthesis|up regulation of blood cell biosynthesis|activation of hemopoiesis|up-regulation of blood cell formation|up regulation of hemopoiesis|activation of hematopoiesis|activation of blood cell biosynthesis|activation of haemopoiesis|up-regulation of blood cell biosynthesis|activation of blood cell formation|upregulation of hemopoiesis|positive regulation of blood cell biosynthesis|up-regulation of hematopoiesis|upregulation of haemopoiesis|positive regulation of hematopoiesis|up regulation of hematopoiesis|upregulation of hematopoiesis|upregulation of blood cell formation An example of this is Atg7 in mouse (UniProt symbol, Q9D906) in PMID:20080761, inferred from mutant phenotype. pad 2014-12-04T15:34:30Z biological_process owl:Class GO:0003184 biolink:NamedThing pulmonary valve morphogenesis The process in which the structure of the pulmonary valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T12:03:35Z biological_process owl:Class GO:0003179 biolink:NamedThing heart valve morphogenesis The process in which the structure of a heart valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl heart valve remodelling|heart valve remodeling dph 2009-10-08T11:23:48Z biological_process owl:Class GO:0043702 biolink:NamedThing carotenoid vesicle A tissue-specific cytoplasmic vesicle surrounded by a membrane half-leaflet within which carotenoid pigments are stored. Carotenoid vesicles are synthesized in xanthophores and erythrophore cells and are yellow, orange or red in appearance. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007382 biolink:NamedThing specification of segmental identity, maxillary segment The specification of the characteristic structures of the maxillary segment following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'maxillary segment ; FBbt:00000013'. biological_process owl:Class GO:1900052 biolink:NamedThing regulation of retinoic acid biosynthetic process Any process that modulates the frequency, rate or extent of retinoic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of retinoic acid anabolic process yaf 2012-01-20T09:55:45Z biological_process owl:Class GO:0036317 biolink:NamedThing tyrosyl-RNA phosphodiesterase activity Catalysis of the hydrolysis of a 5' tyrosyl-RNA phosphodiester bond between a protein and RNA. In picornaviruses, this covalent bond connects VPg, a viral-encoded protein essential for RNA replication, to the 5' end of all nascent picornavirus genomes; it is cleaved from viral RNA prior to its engaging in protein synthesis. tmpzr1t_l9r_go_relaxed.owl Y-pUpN PDE activity|uridylylpolynucleotide-(5' P->O)- tyrosine phosphodiesterase activity|unlinkase activity|VPg unlinkase activity bf 2012-08-30T11:08:04Z molecular_function owl:Class GO:2000529 biolink:NamedThing positive regulation of myeloid dendritic cell chemotaxis Any process that activates or increases the frequency, rate or extent of myeloid dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-23T12:18:45Z biological_process owl:Class GO:0060983 biolink:NamedThing epicardium-derived cardiac vascular smooth muscle cell differentiation The process in which a relatively unspecialized cell derived from the epicardium acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T03:05:33Z biological_process owl:Class GO:0060947 biolink:NamedThing cardiac vascular smooth muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers. tmpzr1t_l9r_go_relaxed.owl heart vascular smooth muscle cell differentiation dph 2009-09-29T02:56:08Z biological_process owl:Class GO:1904193 biolink:NamedThing negative regulation of cholangiocyte apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of cholangiocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of cholangiocyte apoptotic process|downregulation of cholangiocyte apoptosis|negative regulation of cholangiocyte apoptosis|inhibition of epithelial cell of bile duct apoptotic process|down-regulation of cholangiocyte apoptotic process|inhibition of epithelial cell of bile duct apoptosis|down regulation of epithelial cell of bile duct apoptotic process|negative regulation of epithelial cell of bile duct apoptosis|down-regulation of epithelial cell of bile duct apoptotic process|down-regulation of epithelial cell of bile duct apoptosis|inhibition of cholangiocyte apoptosis|downregulation of cholangiocyte apoptotic process|down regulation of cholangiocyte apoptosis|down-regulation of cholangiocyte apoptosis|down regulation of epithelial cell of bile duct apoptosis|negative regulation of epithelial cell of bile duct apoptotic process|downregulation of epithelial cell of bile duct apoptotic process|downregulation of epithelial cell of bile duct apoptosis|down regulation of cholangiocyte apoptotic process sl 2015-05-06T15:25:55Z biological_process owl:Class GO:0050357 biolink:NamedThing tropinesterase activity Catalysis of the reaction: atropine + H(2)O = H(+) + tropate + tropine. tmpzr1t_l9r_go_relaxed.owl atropine acylhydrolase activity|atropinesterase activity|atropinase activity|tropine esterase activity|atropine esterase activity KEGG_REACTION:R03563|MetaCyc:TROPINESTERASE-RXN|EC:3.1.1.10|RHEA:23304 molecular_function owl:Class GO:1902833 biolink:NamedThing positive regulation of cell proliferation in dorsal spinal cord Any process that activates or increases the frequency, rate or extent of cell proliferation in dorsal spinal cord. tmpzr1t_l9r_go_relaxed.owl activation of cell proliferation in dorsal spinal cord|up regulation of cell proliferation in dorsal spinal cord|up-regulation of cell proliferation in dorsal spinal cord|upregulation of cell proliferation in dorsal spinal cord mr 2014-03-31T17:43:33Z biological_process owl:Class GO:0032762 biolink:NamedThing mast cell cytokine production Any process that contributes to cytokine production by a mast cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0061082 biolink:NamedThing myeloid leukocyte cytokine production Any process that contributes to cytokine production by a myeloid cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. dph 2010-04-13T11:29:42Z biological_process owl:Class GO:0046805 biolink:NamedThing protein-heme linkage via 1'-L-histidine The covalent linkage of heme and a protein via 1'-L-histidine (otherwise known as tau-heme-histidine, tele-heme-histidine). tmpzr1t_l9r_go_relaxed.owl protein-haem linkage via 1'-L-histidine RESID:AA0329 biological_process owl:Class GO:0102976 biolink:NamedThing versiconal reductase activity Catalysis of the reaction: versiconol + NADP <=> versiconal hemiacetal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:35699|MetaCyc:RXN-9491|EC:1.1.1.353 molecular_function owl:Class GO:1900877 biolink:NamedThing nonadec-1-ene biosynthetic process The chemical reactions and pathways resulting in the formation of nonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl nonadec-1-ene formation|nonadec-1-ene anabolism|nonadec-1-ene biosynthesis|nonadec-1-ene synthesis tt 2012-06-13T01:52:37Z biological_process owl:Class GO:1900876 biolink:NamedThing nonadec-1-ene metabolic process The chemical reactions and pathways involving nonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl nonadec-1-ene metabolism tt 2012-06-13T01:52:09Z biological_process owl:Class GO:0001711 biolink:NamedThing endodermal cell fate commitment The cell differentiation process that results in commitment of a cell to become part of the endoderm. tmpzr1t_l9r_go_relaxed.owl endoderm cell fate commitment biological_process owl:Class GO:0060795 biolink:NamedThing cell fate commitment involved in formation of primary germ layer The commitment of cells to specific cell fates of the endoderm, ectoderm, or mesoderm as a part of gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T03:11:22Z biological_process owl:Class GO:0006557 biolink:NamedThing S-adenosylmethioninamine biosynthetic process The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. tmpzr1t_l9r_go_relaxed.owl S-adenosylmethioninamine synthesis|S-adenosylmethioninamine formation|S-adenosylmethioninamine biosynthesis|S-adenosylmethioninamine anabolism GO:0006745 biological_process owl:Class GO:0031031 biolink:NamedThing positive regulation of septation initiation signaling Any process that activates or increases the frequency, rate or extent of septation initiation signaling. tmpzr1t_l9r_go_relaxed.owl up-regulation of septation initiation signaling|positive regulation of septation initiation signalling|upregulation of septation initiation signaling|positive regulation of septation initiation signaling cascade|stimulation of septation initiation signaling|positive regulation of septation initiation network|up regulation of septation initiation signaling|activation of septation initiation signaling biological_process owl:Class GO:0051552 biolink:NamedThing flavone metabolic process The chemical reactions and pathways involving flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone). tmpzr1t_l9r_go_relaxed.owl 2-phenyl-4H-1-benzopyran-4-one metabolism|2-phenylchromone metabolism|2-phenylchromone metabolic process|flavone metabolism|2-phenyl-4H-1-benzopyran-4-one metabolic process biological_process owl:Class GO:0030699 biolink:NamedThing glycine reductase activity Catalysis of the reaction: acetyl phosphate + H(2)O + NH(4)(+) + thioredoxin disulfide = glycine + H(+) + phosphate + thioredoxin. tmpzr1t_l9r_go_relaxed.owl acetyl-phosphate ammonia:thioredoxin disulfide oxidoreductase (glycine-forming) EC:1.21.4.2|RHEA:12232|MetaCyc:RXN-7566|KEGG_REACTION:R07226 molecular_function owl:Class GO:0050485 biolink:NamedThing oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is disulfide. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulphide as acceptor EC:1.21.4.- molecular_function owl:Class GO:0140546 biolink:NamedThing defense response to symbiont Reactions triggered in response to the presence of a symbiont that act to protect the cell or organism from damage caused by that symbiont. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20261 pg 2020-11-11T17:19:06Z biological_process owl:Class GO:0002081 biolink:NamedThing outer acrosomal membrane The acrosomal membrane region that underlies the plasma membrane of the sperm. This membrane fuses with the sperm plasma membrane as part of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is not a descendant of 'organelle outer membrane ; GO:0031968' because the outer acrosomal membrane is a portion of the acrosomal membrane; the latter is a single lipid bilayer. cellular_component owl:Class GO:0030659 biolink:NamedThing cytoplasmic vesicle membrane The lipid bilayer surrounding a cytoplasmic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140547 biolink:NamedThing acquisition of seed longevity The acquisition of seed longevity is the ordered series of events during seed development, that prevent embryo deterioration and ROS damage and thus contribute to seed viability over time or in response to adverse environmental conditions. These events include protective (e.g. production of glassy cytoplasm ) and repair (e.g. oxidative stress responses) processes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19829 pg 2020-11-11T21:28:55Z biological_process owl:Class GO:0001700 biolink:NamedThing embryonic development via the syncytial blastoderm The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009792 biolink:NamedThing embryo development ending in birth or egg hatching The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell. tmpzr1t_l9r_go_relaxed.owl embryogenesis biological_process owl:Class GO:0060654 biolink:NamedThing mammary gland cord elongation The process in which the mammary gland sprout grows along its axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T09:26:15Z biological_process owl:Class GO:1904747 biolink:NamedThing positive regulation of apoptotic process involved in development Any process that activates or increases the frequency, rate or extent of apoptotic process involved in development. tmpzr1t_l9r_go_relaxed.owl activation of induction of apoptosis by p53 involved in development of an anatomical structure|up regulation of programmed cell death by apoptosis involved in anatomical structure development|up regulation of apoptosis signaling involved in development of an anatomical structure|upregulation of apoptotic programmed cell death involved in anatomical structure development|up regulation of apoptotic cell death involved in development of an anatomical structure|activation of induction of apoptosis involved in anatomical structure development|up regulation of apoptosis activator activity involved in development of an anatomical structure|positive regulation of programmed cell death by apoptosis involved in anatomical structure development|positive regulation of programmed cell death by apoptosis involved in development of an anatomical structure|up-regulation of programmed cell death by apoptosis involved in anatomical structure development|activation of apoptotic process involved in development of an anatomical structure|upregulation of induction of apoptosis by p53 involved in anatomical structure development|up-regulation of apoptotic process involved in anatomical structure development|activation of apoptosis activator activity involved in anatomical structure development|up-regulation of apoptotic process involved in development of an anatomical structure|up-regulation of apoptotic cell death involved in development of an anatomical structure|up regulation of commitment to apoptosis involved in anatomical structure development|positive regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|upregulation of induction of apoptosis involved in anatomical structure development|up regulation of induction of apoptosis by p53 involved in anatomical structure development|up-regulation of apoptosis involved in development of an anatomical structure|up regulation of apoptotic process involved in development of an anatomical structure|upregulation of apoptosis activator activity involved in development of an anatomical structure|up-regulation of commitment to apoptosis involved in anatomical structure development|upregulation of signaling (initiator) caspase activity involved in anatomical structure development|up-regulation of programmed cell death by apoptosis involved in development of an anatomical structure|up regulation of apoptotic programmed cell death involved in development of an anatomical structure|upregulation of apoptosis signaling involved in development of an anatomical structure|upregulation of apoptotic cell death involved in development of an anatomical structure|up-regulation of apoptotic cell death involved in anatomical structure development|up regulation of apoptosis involved in development of an anatomical structure|activation of apoptotic cell death involved in development of an anatomical structure|up regulation of programmed cell death by apoptosis involved in development of an anatomical structure|up-regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|upregulation of apoptosis involved in development of an anatomical structure|upregulation of apoptotic program involved in development of an anatomical structure|up-regulation of apoptotic program involved in development of an anatomical structure|activation of activation of apoptosis involved in development of an anatomical structure|upregulation of programmed cell death by apoptosis involved in anatomical structure development|up-regulation of type I programmed cell death involved in anatomical structure development|up-regulation of activation of apoptosis involved in anatomical structure development|activation of type I programmed cell death involved in development of an anatomical structure|up regulation of apoptosis activator activity involved in anatomical structure development|positive regulation of apoptotic program involved in anatomical structure development|activation of apoptotic process involved in anatomical structure development|up regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|activation of commitment to apoptosis involved in anatomical structure development|up-regulation of apoptosis activator activity involved in development of an anatomical structure|up-regulation of induction of apoptosis by p53 involved in development of an anatomical structure|positive regulation of apoptotic programmed cell death involved in development of an anatomical structure|positive regulation of apoptotic process involved in development of an anatomical structure|up-regulation of induction of apoptosis involved in anatomical structure development|upregulation of apoptotic program involved in anatomical structure development|activation of apoptotic process involved in development|upregulation of apoptotic process involved in development|upregulation of induction of apoptosis by p53 involved in development of an anatomical structure|up-regulation of apoptosis signaling involved in development of an anatomical structure|activation of apoptosis signaling involved in development of an anatomical structure|activation of apoptotic program involved in anatomical structure development|up-regulation of type I programmed cell death involved in development of an anatomical structure|up regulation of apoptotic program involved in development of an anatomical structure|positive regulation of apoptotic cell death involved in development of an anatomical structure|upregulation of apoptotic process involved in development of an anatomical structure|positive regulation of signaling (initiator) caspase activity involved in anatomical structure development|up regulation of apoptotic programmed cell death involved in anatomical structure development|positive regulation of apoptotic cell death involved in anatomical structure development|positive regulation of apoptosis activator activity involved in development of an anatomical structure|positive regulation of apoptotic process involved in anatomical structure development|positive regulation of induction of apoptosis by p53 involved in development of an anatomical structure|activation of apoptotic program involved in development of an anatomical structure|up regulation of apoptotic process involved in development|positive regulation of induction of apoptosis involved in development of an anatomical structure|up-regulation of signaling (initiator) caspase activity involved in anatomical structure development|positive regulation of induction of apoptosis by p53 involved in anatomical structure development|activation of apoptotic programmed cell death involved in development of an anatomical structure|up regulation of apoptosis involved in anatomical structure development|up regulation of induction of apoptosis involved in anatomical structure development|positive regulation of apoptosis signaling involved in anatomical structure development|activation of apoptosis signaling involved in anatomical structure development|positive regulation of type I programmed cell death involved in development of an anatomical structure|activation of apoptosis involved in development of an anatomical structure|up regulation of activation of apoptosis involved in anatomical structure development|upregulation of programmed cell death by apoptosis involved in development of an anatomical structure|up regulation of apoptosis signaling involved in anatomical structure development|up-regulation of apoptosis signaling involved in anatomical structure development|positive regulation of apoptosis involved in anatomical structure development|activation of programmed cell death by apoptosis involved in anatomical structure development|upregulation of signaling (initiator) caspase activity involved in development of an anatomical structure|positive regulation of activation of apoptosis involved in anatomical structure development|up-regulation of activation of apoptosis involved in development of an anatomical structure|up regulation of induction of apoptosis by p53 involved in development of an anatomical structure|up regulation of apoptotic cell death involved in anatomical structure development|positive regulation of apoptotic program involved in development of an anatomical structure|positive regulation of type I programmed cell death involved in anatomical structure development|activation of apoptotic cell death involved in anatomical structure development|upregulation of apoptosis involved in anatomical structure development|upregulation of apoptosis signaling involved in anatomical structure development|up regulation of activation of apoptosis involved in development of an anatomical structure|up-regulation of apoptotic programmed cell death involved in development of an anatomical structure|up-regulation of apoptosis activator activity involved in anatomical structure development|activation of signaling (initiator) caspase activity involved in anatomical structure development|up regulation of apoptotic program involved in anatomical structure development|activation of apoptosis activator activity involved in development of an anatomical structure|upregulation of apoptotic process involved in anatomical structure development|positive regulation of commitment to apoptosis involved in development of an anatomical structure|up regulation of type I programmed cell death involved in development of an anatomical structure|positive regulation of apoptosis signaling involved in development of an anatomical structure|up-regulation of induction of apoptosis by p53 involved in anatomical structure development|activation of commitment to apoptosis involved in development of an anatomical structure|activation of activation of apoptosis involved in anatomical structure development|activation of induction of apoptosis by p53 involved in anatomical structure development|upregulation of activation of apoptosis involved in development of an anatomical structure|upregulation of commitment to apoptosis involved in anatomical structure development|activation of apoptosis involved in anatomical structure development|up-regulation of induction of apoptosis involved in development of an anatomical structure|up-regulation of commitment to apoptosis involved in development of an anatomical structure|positive regulation of commitment to apoptosis involved in anatomical structure development|upregulation of commitment to apoptosis involved in development of an anatomical structure|up regulation of induction of apoptosis involved in development of an anatomical structure|up-regulation of apoptosis involved in anatomical structure development|positive regulation of apoptotic programmed cell death involved in anatomical structure development|activation of induction of apoptosis involved in development of an anatomical structure|upregulation of apoptotic programmed cell death involved in development of an anatomical structure|up-regulation of apoptotic program involved in anatomical structure development|positive regulation of apoptosis activator activity involved in anatomical structure development|up-regulation of apoptotic process involved in development|activation of type I programmed cell death involved in anatomical structure development|up-regulation of apoptotic programmed cell death involved in anatomical structure development|upregulation of induction of apoptosis involved in development of an anatomical structure|up regulation of signaling (initiator) caspase activity involved in anatomical structure development|upregulation of apoptotic cell death involved in anatomical structure development|activation of apoptotic programmed cell death involved in anatomical structure development|upregulation of activation of apoptosis involved in anatomical structure development|activation of programmed cell death by apoptosis involved in development of an anatomical structure|positive regulation of induction of apoptosis involved in anatomical structure development|up regulation of type I programmed cell death involved in anatomical structure development|positive regulation of activation of apoptosis involved in development of an anatomical structure|upregulation of apoptosis activator activity involved in anatomical structure development|up regulation of commitment to apoptosis involved in development of an anatomical structure|upregulation of type I programmed cell death involved in anatomical structure development|activation of signaling (initiator) caspase activity involved in development of an anatomical structure|up regulation of apoptotic process involved in anatomical structure development|positive regulation of apoptosis involved in development of an anatomical structure|upregulation of type I programmed cell death involved in development of an anatomical structure U4PR86 in PMID:22801495 inferred from mutant phenotype es 2015-10-19T14:12:34Z biological_process owl:Class GO:1904748 biolink:NamedThing regulation of apoptotic process involved in development Any process that modulates the frequency, rate or extent of apoptotic process involved in development. tmpzr1t_l9r_go_relaxed.owl regulation of commitment to apoptosis involved in development of an anatomical structure|regulation of apoptosis activator activity involved in anatomical structure development|regulation of apoptotic programmed cell death involved in development of an anatomical structure|regulation of apoptosis signaling involved in development of an anatomical structure|regulation of activation of apoptosis involved in development of an anatomical structure|regulation of apoptosis involved in anatomical structure development|regulation of apoptosis activator activity involved in development of an anatomical structure|regulation of induction of apoptosis by p53 involved in anatomical structure development|regulation of apoptosis involved in development of an anatomical structure|regulation of type I programmed cell death involved in anatomical structure development|regulation of programmed cell death by apoptosis involved in development of an anatomical structure|regulation of activation of apoptosis involved in anatomical structure development|regulation of type I programmed cell death involved in development of an anatomical structure|regulation of induction of apoptosis by p53 involved in development of an anatomical structure|regulation of signaling (initiator) caspase activity involved in anatomical structure development|regulation of apoptotic cell death involved in development of an anatomical structure|regulation of programmed cell death by apoptosis involved in anatomical structure development|regulation of apoptotic process involved in anatomical structure development|regulation of apoptotic programmed cell death involved in anatomical structure development|regulation of commitment to apoptosis involved in anatomical structure development|regulation of apoptotic program involved in anatomical structure development|regulation of apoptosis signaling involved in anatomical structure development|regulation of induction of apoptosis involved in anatomical structure development|regulation of apoptotic cell death involved in anatomical structure development|regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|regulation of apoptotic process involved in development of an anatomical structure|regulation of induction of apoptosis involved in development of an anatomical structure|regulation of apoptotic program involved in development of an anatomical structure Q10943 in PMID:22801495, inferred from mutant phenotype es 2015-10-19T15:02:28Z biological_process owl:Class GO:0051973 biolink:NamedThing positive regulation of telomerase activity Any process that activates or increases the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). tmpzr1t_l9r_go_relaxed.owl stimulation of telomerase activity|up regulation of telomerase activity|upregulation of telomerase activity|activation of telomerase activity|up-regulation of telomerase activity|telomerase activator biological_process owl:Class GO:1904923 biolink:NamedThing regulation of autophagy of mitochondrion in response to mitochondrial depolarization Any process that modulates the frequency, rate or extent of autophagy of mitochondrion in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl pad 2016-01-26T11:23:50Z biological_process owl:Class GO:0098780 biolink:NamedThing response to mitochondrial depolarisation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) in response to the depolarization of one or more mitochondria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045147 biolink:NamedThing regulation of initiation of acetate catabolic process by acetate Any process that modulates the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl regulation of initiation of acetate breakdown by acetate|regulation of initiation of acetate degradation by acetate biological_process owl:Class GO:1901457 biolink:NamedThing regulation of response to acetate Any process that modulates the frequency, rate or extent of response to acetate. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:25:06Z biological_process owl:Class GO:0009568 biolink:NamedThing amyloplast starch grain Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in amyloplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped. tmpzr1t_l9r_go_relaxed.owl amyloplast starch granule cellular_component owl:Class GO:0043036 biolink:NamedThing starch grain Plant storage body for amylose and amylopectin, 1-100um in diameter. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped. tmpzr1t_l9r_go_relaxed.owl starch granule cellular_component owl:Class GO:0052588 biolink:NamedThing diacetyl reductase ((S)-acetoin forming) activity Catalysis of the reaction: (S)-acetoin + NAD(+) = diacetyl + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (S)-acetoin dehydrogenase activity MetaCyc:RXN-11032|KEGG_REACTION:R09078|EC:1.1.1.304|RHEA:27286 molecular_function owl:Class GO:0034894 biolink:NamedThing 4-hydroxypyridine-3-hydroxylase activity Catalysis of the reaction: 4-hydroxypyridine + O2 + H+ + NADPH = pyridine-3,4-diol + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1397|EC:1.14.13.- molecular_function owl:Class GO:1905957 biolink:NamedThing regulation of cellular response to alcohol Any process that modulates the frequency, rate or extent of cellular response to alcohol. tmpzr1t_l9r_go_relaxed.owl hbye 2017-02-22T12:03:00Z biological_process owl:Class GO:0031666 biolink:NamedThing positive regulation of lipopolysaccharide-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of signaling in response to detection of lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl up regulation of lipopolysaccharide-mediated signaling pathway|positive regulation of LPS-mediated signaling pathway|stimulation of lipopolysaccharide-mediated signaling pathway|up-regulation of lipopolysaccharide-mediated signaling pathway|upregulation of lipopolysaccharide-mediated signaling pathway|activation of lipopolysaccharide-mediated signaling pathway|positive regulation of lipopolysaccharide-mediated signalling pathway biological_process owl:Class GO:0031664 biolink:NamedThing regulation of lipopolysaccharide-mediated signaling pathway Any process that modulates the frequency, rate or extent of signaling in response to detection of lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl regulation of LPS-mediated signaling pathway|regulation of lipopolysaccharide-mediated signalling pathway biological_process owl:Class GO:0043204 biolink:NamedThing perikaryon The portion of the cell soma (neuronal cell body) that excludes the nucleus. tmpzr1t_l9r_go_relaxed.owl cell soma cytoplasm cellular_component owl:Class GO:0060880 biolink:NamedThing cell morphogenesis involved in semicircular canal fusion The change in form (cell shape and size) that occurs when a semicircular canal epithelial cell acquires the structural features that allow it to contribute to the process of semicircular canal fusion. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T10:13:25Z biological_process owl:Class GO:1904685 biolink:NamedThing positive regulation of metalloendopeptidase activity Any process that activates or increases the frequency, rate or extent of metalloendopeptidase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of metalloendoproteinase activity|positive regulation of metalloendoprotease activity|upregulation of metalloendoprotease activity|up-regulation of metalloendopeptidase activity|up regulation of metalloendoprotease activity|up-regulation of metalloendoprotease activity|activation of metalloendoprotease activity|upregulation of metalloendopeptidase activity|up regulation of metalloendoproteinase activity|activation of metalloendopeptidase activity|activation of metalloendoproteinase activity|positive regulation of metalloendoproteinase activity|upregulation of metalloendoproteinase activity|up regulation of metalloendopeptidase activity rph 2015-09-24T11:18:28Z biological_process owl:Class GO:0098907 biolink:NamedThing regulation of SA node cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an SA node cardiac myocyte. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl regulation of SAN cardiac muscle cell action potential|regulation of sinoatrial node cardiac muscle cell action potential|regulation of sinus node cardiac muscle cell action potential|regulation of SA node cardiac muscle cell action potential tb 2011-11-10T08:50:15Z biological_process owl:Class GO:0046832 biolink:NamedThing negative regulation of RNA export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of RNA from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl downregulation of RNA export from nucleus|negative regulation of RNA-nucleus export|down regulation of RNA export from nucleus|negative regulation of RNA export from cell nucleus|inhibition of RNA export from nucleus|negative regulation of RNA transport from nucleus to cytoplasm|negative regulation of RNA export out of nucleus|down-regulation of RNA export from nucleus biological_process owl:Class GO:1901366 biolink:NamedThing funalenone biosynthetic process The chemical reactions and pathways resulting in the formation of funalenone. tmpzr1t_l9r_go_relaxed.owl funalenone biosynthesis|funalenone formation|funalenone synthesis|funalenone anabolism di 2012-09-17T18:25:47Z biological_process owl:Class GO:0004318 biolink:NamedThing enoyl-[acyl-carrier-protein] reductase (NADH) activity Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+. tmpzr1t_l9r_go_relaxed.owl enoyl-[acyl-carrier protein] reductase (NADH) activity|enoyl-acyl-carrier-protein reductase (NADH)|enoyl-ACP reductase (NADH) activity|NADH-specific enoyl-ACP reductase activity|NADH-enoyl acyl carrier protein reductase activity|acyl-acyl-carrier-protein:NAD+ oxidoreductase EC:1.3.1.9|MetaCyc:ENOYL-ACP-REDUCT-NADH-RXN molecular_function owl:Class GO:0050350 biolink:NamedThing trihydroxystilbene synthase activity Catalysis of the reaction: 3 malonyl-CoA + 4-coumaroyl-CoA = 4 CoA + 3,4',5-trihydroxy-stilbene + 4 CO2. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:4-coumaroyl-CoA malonyltransferase (cyclizing)|stilbene synthase activity|resveratrol synthase activity EC:2.3.1.95|RHEA:11936|MetaCyc:TRIHYDROXYSTILBENE-SYNTHASE-RXN molecular_function owl:Class GO:0035315 biolink:NamedThing hair cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a hair cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072531 biolink:NamedThing pyrimidine-containing compound transmembrane transport The process in which a pyrimidine-containing compound is transported across a membrane. A pyrimidine-containing compound is any compound that contains pyrimidine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyrimidine-containing compound membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2011-01-05T01:47:22Z biological_process owl:Class GO:0045648 biolink:NamedThing positive regulation of erythrocyte differentiation Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl activation of erythrocyte differentiation|up-regulation of erythrocyte differentiation|up regulation of erythrocyte differentiation|stimulation of erythrocyte differentiation|positive regulation of RBC differentiation|positive regulation of red blood cell differentiation|upregulation of erythrocyte differentiation biological_process owl:Class GO:0045646 biolink:NamedThing regulation of erythrocyte differentiation Any process that modulates the frequency, rate or extent of erythrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of red blood cell differentiation|regulation of RBC differentiation biological_process owl:Class GO:0047195 biolink:NamedThing diacylglycerol-sterol O-acyltransferase activity Catalysis of the reaction: sterol + 1,2-diacylglycerol = sterol ester + acylglycerol. tmpzr1t_l9r_go_relaxed.owl 1,2-diacyl-sn-glycerol:sterol acyl transferase activity|1,2-diacyl-sn-glycerol:sterol O-acyltransferase activity EC:2.3.1.73|RHEA:13301|MetaCyc:2.3.1.73-RXN molecular_function owl:Class GO:0055041 biolink:NamedThing cyclopentanol dehydrogenase activity Catalysis of the reaction: cyclopentanol + NAD(+) = cyclopentanone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cyclopentanol:NADP+ oxidoreductase activity|cyclopentanol:NAD+ oxidoreductase activity KEGG_REACTION:R02553|MetaCyc:CYCLOPENTANOL-DEHYDROGENASE-RXN|EC:1.1.1.163|RHEA:11728 molecular_function owl:Class GO:0009830 biolink:NamedThing cell wall modification involved in abscission A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. tmpzr1t_l9r_go_relaxed.owl cell wall modification during abscission biological_process owl:Class GO:0042545 biolink:NamedThing cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014803 biolink:NamedThing longitudinal sarcoplasmic reticulum lumen The region between the inner and outer lipid bilayers of the longitudinal sarcoplasmic reticulum envelope. The longitudinal sarcoplasmic reticulum lumen is continuous with the lumen contained within the terminal cisternae. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905851 biolink:NamedThing negative regulation of backward locomotion Any process that stops, prevents or reduces the frequency, rate or extent of backward locomotion. tmpzr1t_l9r_go_relaxed.owl inhibition of backward locomotion|down-regulation of backward locomotion|downregulation of backward locomotion|down regulation of backward locomotion rz 2017-01-23T11:04:16Z biological_process owl:Class GO:0001678 biolink:NamedThing cellular glucose homeostasis A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment. tmpzr1t_l9r_go_relaxed.owl cell glucose homeostasis biological_process owl:Class GO:0004775 biolink:NamedThing succinate-CoA ligase (ADP-forming) activity Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate. tmpzr1t_l9r_go_relaxed.owl succinyl coenzyme A synthetase (adenosine diphosphate-forming) activity|succinate thiokinase activity|succinate:CoA ligase (ADP-forming) activity|succinyl-CoA synthetase (ADP-forming) activity|succinic thiokinase|succinyl coenzyme A synthetase|A-STK (adenin nucleotide-linked succinate thiokinase)|A-SCS|succinyl-CoA synthetase activity RHEA:17661|Reactome:R-HSA-70997|KEGG_REACTION:R00405|MetaCyc:SUCCCOASYN-RXN|EC:6.2.1.5 molecular_function owl:Class GO:0004774 biolink:NamedThing succinate-CoA ligase activity Catalysis of the reaction: succinate + CoA + nucleotide triphosphate = nucleotide diphosphate + phosphate + succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006168 biolink:NamedThing adenine salvage Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl adenine salvage pathway|adenine, hypoxanthine and their nucleoside salvage biological_process owl:Class GO:0046084 biolink:NamedThing adenine biosynthetic process The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. tmpzr1t_l9r_go_relaxed.owl adenine biosynthesis|adenine synthesis|adenine formation|adenine anabolism biological_process owl:Class GO:0043321 biolink:NamedThing regulation of natural killer cell degranulation Any process that modulates the frequency, rate, or extent of natural killer cell degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell granule exocytosis|regulation of natural killer cell granule exocytosis|regulation of NK cell degranulation biological_process owl:Class GO:0061253 biolink:NamedThing mesonephric glomerular parietal epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a mesonephric glomerular parietal epithelial cell. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:26:47Z biological_process owl:Class GO:0072139 biolink:NamedThing glomerular parietal epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glomerular parietal epithelial cell. Glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T01:33:05Z biological_process owl:Class GO:1903469 biolink:NamedThing removal of RNA primer involved in mitotic DNA replication Any DNA replication, removal of RNA primer that is involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication, removal of RNA primer involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA replication, removal of RNA primer involved in mitotic nuclear cell cycle DNA replication|Okazaki initiator RNA removal involved in mitotic cell cycle DNA replication|Okazaki initiator RNA removal involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA replication, removal of RNA primer involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|Okazaki initiator RNA removal involved in DNA replication involved in S phase involved in mitotic cell cycle|Okazaki initiator RNA removal involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA replication, removal of RNA primer involved in DNA replication involved in S phase involved in mitotic cell cycle|Okazaki initiator RNA removal involved in mitotic nuclear cell cycle DNA replication|Okazaki initiator RNA removal involved in DNA replication during S phase involved in mitotic cell cycle|DNA replication, removal of RNA primer involved in DNA replication during S phase involved in mitotic cell cycle vw 2014-09-23T13:42:24Z biological_process owl:Class GO:1904215 biolink:NamedThing regulation of protein import into chloroplast stroma Any process that modulates the frequency, rate or extent of protein import into chloroplast stroma. tmpzr1t_l9r_go_relaxed.owl regulation of protein transport into chloroplast stroma|regulation of chloroplast stroma protein import tb 2015-05-15T00:47:48Z biological_process owl:Class GO:0031640 biolink:NamedThing killing of cells of other organism Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions. tmpzr1t_l9r_go_relaxed.owl killing of cells of another organism|killing of cells of another, non-host, organism GO:0001908 biological_process owl:Class GO:0044419 biolink:NamedThing biological process involved in interspecies interaction between organisms Any process evolved to enable an interaction with an organism of a different species. tmpzr1t_l9r_go_relaxed.owl interspecies interaction between organisms|interaction with another species|interspecies interaction|interspecies interaction with other organisms https://github.com/geneontology/go-ontology/issues/20191 biological_process owl:Class GO:0071358 biolink:NamedThing cellular response to type III interferon Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type III interferon stimulus. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl cellular response to interferon-lambda|cellular response to type III IFN mah 2009-12-11T02:52:00Z biological_process owl:Class GO:0102758 biolink:NamedThing very-long-chain enoyl-CoA reductase activity Catalysis of the reaction: NADP(3-) + a very-long-chain 2,3,4-saturated fatty acyl CoA <=> NADPH(4-) + H+ + a very-long-chain trans-2,3-dehydroacyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.93|MetaCyc:RXN-7711|RHEA:14473 molecular_function owl:Class GO:0045088 biolink:NamedThing regulation of innate immune response Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032660 biolink:NamedThing regulation of interleukin-17 production Any process that modulates the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-17 secretion|regulation of CTLA-8 production|regulation of IL-17 production|regulation of interleukin-17 biosynthetic process|regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion GO:1905076|GO:0045378 biological_process owl:Class GO:2000879 biolink:NamedThing negative regulation of dipeptide transport Any process that stops, prevents or reduces the frequency, rate or extent of dipeptide transport. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-27T02:55:21Z biological_process owl:Class GO:0052542 biolink:NamedThing defense response by callose deposition Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. tmpzr1t_l9r_go_relaxed.owl callose deposition during defense response|callose localization during defense response biological_process owl:Class GO:0035939 biolink:NamedThing microsatellite binding Binding to a microsatellite, a repeat_region in DNA containing repeat units (2 to 4 base pairs) that is repeated multiple times in tandem. tmpzr1t_l9r_go_relaxed.owl variable number tandem repeat binding|VNTR binding|microsatellite DNA binding bf 2011-07-20T01:26:26Z molecular_function owl:Class GO:0003696 biolink:NamedThing satellite DNA binding Binding to satellite DNA, the many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009535 biolink:NamedThing chloroplast thylakoid membrane The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008712 biolink:NamedThing ADP-glyceromanno-heptose 6-epimerase activity Catalysis of the reaction: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose. tmpzr1t_l9r_go_relaxed.owl ADPglyceromanno-heptose 6-epimerase activity|ADP-L-glycero-D-manno-heptose 6-epimerase activity EC:5.1.3.20|RHEA:17577|KEGG_REACTION:R05176|MetaCyc:5.1.3.20-RXN molecular_function owl:Class GO:1905518 biolink:NamedThing regulation of presynaptic active zone assembly Any process that modulates the frequency, rate or extent of presynaptic active zone assembly. tmpzr1t_l9r_go_relaxed.owl regulation of pre-synaptic active zone formation|regulation of presynaptic active zone formation|regulation of pre-synaptic active zone component formation|regulation of pre-synaptic active zone assembly|regulation of pre-synaptic active zone component assembly rl 2016-10-01T09:37:51Z biological_process owl:Class GO:2001084 biolink:NamedThing L-arabinofuranose binding Binding to L-arabinofuranose. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:33:53Z molecular_function owl:Class GO:0016409 biolink:NamedThing palmitoyltransferase activity Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-203567|Reactome:R-HSA-5686304 molecular_function owl:Class GO:0000446 biolink:NamedThing nucleoplasmic THO complex The THO complex when it is acting as a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp2, and Mft1, while the human complex is composed of 7 subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900078 biolink:NamedThing positive regulation of cellular response to insulin stimulus Any process that activates or increases the frequency, rate or extent of cellular response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl activation of cellular response to insulin stimulus|upregulation of cellular response to insulin stimulus|up-regulation of cellular response to insulin stimulus|up regulation of cellular response to insulin stimulus yaf 2012-01-31T11:24:30Z biological_process owl:Class GO:0090270 biolink:NamedThing regulation of fibroblast growth factor production Any process that modulates the rate, frequency or extent of the appearance of a fibroblast growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:33:33Z biological_process owl:Class GO:1904801 biolink:NamedThing positive regulation of neuron remodeling Any process that activates or increases the frequency, rate or extent of neuron remodeling. tmpzr1t_l9r_go_relaxed.owl up regulation of neuron remodeling|up-regulation of neuronal remodeling|upregulation of neuronal remodeling|upregulation of axon pruning|up regulation of axon pruning|activation of neuronal remodeling|activation of neuron remodeling|positive regulation of neuronal remodeling|activation of axon pruning|up regulation of neuronal remodeling|up-regulation of neuron remodeling|upregulation of neuron remodeling|positive regulation of axon pruning|up-regulation of axon pruning cyy-1 in C. Elegans (P34624) in PMID:21609829 (inferred from mutant phenotype) es 2015-11-09T13:47:07Z biological_process owl:Class GO:0001694 biolink:NamedThing histamine biosynthetic process The chemical reactions and pathways resulting in the formation of histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl histamine synthesis|histamine formation|histamine biosynthesis|histamine anabolism GO:0001693 biological_process owl:Class GO:0070103 biolink:NamedThing regulation of interleukin-6-mediated signaling pathway Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6-mediated binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of IL-6-mediated signaling pathway|regulation of interleukin-6-mediated signalling pathway biological_process owl:Class GO:0099544 biolink:NamedThing perisynaptic space The extracellular region immediately adjacent to to a synapse. tmpzr1t_l9r_go_relaxed.owl extrasynaptic space cellular_component owl:Class GO:0004565 biolink:NamedThing beta-galactosidase activity Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. tmpzr1t_l9r_go_relaxed.owl trilactase activity|exo-(1->4)-beta-D-galactanase activity|lactose hydrolysis|beta-D-lactosidase activity|S 2107|hydrolact|sumiklat|beta-D-galactanase activity|lactozym|beta-D-galactoside galactohydrolase activity|beta-lactosidase activity|oryzatym|maxilact Reactome:R-HSA-1606312|Reactome:R-HSA-9036061|Reactome:R-HSA-1630306|MetaCyc:BGALACT-PWY|Reactome:R-HSA-2090079|EC:3.2.1.23|Reactome:R-HSA-1793217|Reactome:R-HSA-1605624|MetaCyc:3.2.1.23-RXN|Reactome:R-HSA-2265534 Note that the inclusion of 'MetaCyc:BGALACT-PWY' is exceptional: normally MetaCyc pathway entries are database references for biological process terms, not molecular function terms. An exception was made in this case because the MetaCyc entry 'BGALACT-PWY' describes only one reaction, that catalyzed by beta-galactosidase. molecular_function owl:Class GO:0019506 biolink:NamedThing phenylmercury acetate catabolic process The chemical reactions and pathways resulting in the breakdown of phenylmercury acetate, an organomercurial compound composed of a mercury atom attached to a benzene ring and an acetate group. tmpzr1t_l9r_go_relaxed.owl phenylmercury acetate breakdown|phenylmercury acetate catabolism|phenylmercury acetate degradation MetaCyc:P641-PWY biological_process owl:Class GO:0046412 biolink:NamedThing phenylmercury acetate metabolic process The chemical reactions and pathways involving phenylmercury acetate, an organomercurial compound composed of a mercury atom attached to a benzene ring and an acetate group. tmpzr1t_l9r_go_relaxed.owl phenylmercury acetate metabolism biological_process owl:Class GO:0042882 biolink:NamedThing L-arabinose transmembrane transport The process in which L-arabinose, the L-enantiomer of arabinose, is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl L-arabinose transport biological_process owl:Class GO:0015751 biolink:NamedThing arabinose transmembrane transport The process in which arabinose, a pentose monosaccharide that occurs in both D and L configurations, is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl arabinose transport biological_process owl:Class GO:0006124 biolink:NamedThing ferredoxin metabolic process The chemical reactions and pathways involving ferredoxin, any simple, nonenzymatic iron-sulfur protein that is characterized by having equal numbers of atoms of iron and labile sulfur. Iron and sulfur atoms are present in one or two clusters of two or four atoms of each. tmpzr1t_l9r_go_relaxed.owl ferredoxin metabolism biological_process owl:Class GO:0019659 biolink:NamedThing glucose catabolic process to lactate The anaerobic enzymatic chemical reactions and pathways resulting in the breakdown of glucose to lactate, and possibly ethanol, yielding energy in the form of adenosine triphosphate (ATP). tmpzr1t_l9r_go_relaxed.owl lactate fermentation|glucose fermentation to lactate Wikipedia:Lactic_acid_fermentation biological_process owl:Class GO:0018776 biolink:NamedThing trans-chloroacrylic acid dehalogenase activity Catalysis of the reaction: trans-3-chloroacrylic acid + H2O = H+ + malonate semialdehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0689 molecular_function owl:Class GO:0047705 biolink:NamedThing bilirubin oxidase activity Catalysis of the reaction: 2 bilirubin + O(2) = 2 biliverdin + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl bilirubin:oxygen oxidoreductase activity|bilirubin oxidase M-1 MetaCyc:BILIRUBIN-OXIDASE-RXN|RHEA:20980|KEGG_REACTION:R02394|EC:1.3.3.5 molecular_function owl:Class GO:0016634 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl EC:1.3.3.- molecular_function owl:Class GO:0009189 biolink:NamedThing deoxyribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside diphosphate formation|deoxyribonucleoside diphosphate anabolism|deoxyribonucleoside diphosphate biosynthesis|deoxyribonucleoside diphosphate synthesis biological_process owl:Class GO:1904520 biolink:NamedThing regulation of myofibroblast cell apoptotic process Any process that modulates the frequency, rate or extent of myofibroblast cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of MFB apoptosis|regulation of MFB apoptotic process|regulation of myofibroblast cell apoptosis sl 2015-07-29T15:52:14Z biological_process owl:Class GO:0019491 biolink:NamedThing ectoine biosynthetic process The chemical reactions and pathways resulting in the formation of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria. tmpzr1t_l9r_go_relaxed.owl ectoine anabolism|ectoine synthesis|ectoine biosynthesis|ectoine formation MetaCyc:P101-PWY biological_process owl:Class GO:0034331 biolink:NamedThing cell junction maintenance The organization process that preserves a cell junction in a stable functional or structural state. A cell junction is a specialized region of connection between two cells or between a cell and the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905004 biolink:NamedThing picolinic acid biosynthetic process The chemical reactions and pathways resulting in the formation of picolinic acid. tmpzr1t_l9r_go_relaxed.owl picolinic acid formation|picolinate biosynthetic process|picolinic acid synthesis|picolinic acid anabolism|picolinic acid biosynthesis|picolinate biosynthesis bf 2016-03-01T14:06:35Z biological_process owl:Class GO:1902472 biolink:NamedThing regulation of mitotic cytokinesis, site selection Any process that modulates the frequency, rate or extent of mitotic cytokinesis, site selection. tmpzr1t_l9r_go_relaxed.owl mah 2013-10-24T14:20:12Z biological_process owl:Class GO:0048807 biolink:NamedThing female genitalia morphogenesis The process in which the anatomical structures of female genitalia are generated and organized. tmpzr1t_l9r_go_relaxed.owl female genital morphogenesis biological_process owl:Class GO:0019319 biolink:NamedThing hexose biosynthetic process The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl hexose synthesis|hexose biosynthesis|hexose formation|hexose anabolism biological_process owl:Class GO:0023061 biolink:NamedThing signal release The process in which a signal is secreted or discharged into the extracellular medium from a cellular source. tmpzr1t_l9r_go_relaxed.owl signal secretion 2010-02-16T09:30:50Z biological_process owl:Class GO:1905243 biolink:NamedThing cellular response to 3,3',5-triiodo-L-thyronine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3,3',5-triiodo-L-thyronine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to Liothyronine|cellular response to Liothyroninum|cellular response to Liothyronin sl 2016-06-08T17:42:12Z biological_process owl:Class GO:0106095 biolink:NamedThing m7G(5')pppN diphosphatase complex A homodimeric protein complex that catalyzes the reaction: 7-methylguanosine-5'-triphospho-5'-pholynucleotide + H20 = 7-methylguanosine-5'-phosphate + polynucleotide. tmpzr1t_l9r_go_relaxed.owl m7G(5')pppN pyrophosphatase enzyme|M(7)G(5')pppN pyrophosphatase enzyme|7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase enzyme|DCS1 decapping scavenger complex|m7G(5')pppN diphosphatase enzyme hjd 2018-02-07T17:52:03Z cellular_component owl:Class GO:0004665 biolink:NamedThing prephenate dehydrogenase (NADP+) activity Catalysis of the reaction: NADP(+) + prephenate = (4-hydroxyphenyl)pyruvate + CO(2) + NADPH. tmpzr1t_l9r_go_relaxed.owl prephenate (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|prephenate:NADP+ oxidoreductase (decarboxylating) EC:1.3.1.13|MetaCyc:PREPHENATE-DEHYDROGENASE-NADP+-RXN|KEGG_REACTION:R01730|RHEA:21640 molecular_function owl:Class GO:0019411 biolink:NamedThing aerobic respiration, using ferrous ions as electron donor The metabolic process in which ferrous ions (Fe2+) are oxidized to ferric ions (Fe3+) to generate energy, coupled to the reduction of carbon dioxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900987 biolink:NamedThing ajmaline catabolic process The chemical reactions and pathways resulting in the breakdown of ajmaline. tmpzr1t_l9r_go_relaxed.owl ajmaline catabolism|ajmaline breakdown|ajmaline degradation yaf 2012-06-14T09:47:26Z biological_process owl:Class GO:0032109 biolink:NamedThing positive regulation of response to nutrient levels Any process that activates or increases the frequency, rate or extent of a response to nutrient levels. tmpzr1t_l9r_go_relaxed.owl stimulation of response to nutrient levels|up-regulation of response to nutrient levels|up regulation of response to nutrient levels|upregulation of response to nutrient levels|activation of response to nutrient levels biological_process owl:Class GO:0032107 biolink:NamedThing regulation of response to nutrient levels Any process that modulates the frequency, rate or extent of a response to nutrient levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071348 biolink:NamedThing cellular response to interleukin-11 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-11 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-11 mah 2009-12-11T02:49:29Z biological_process owl:Class GO:0071105 biolink:NamedThing response to interleukin-11 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-11 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-11 mah 2009-11-09T12:52:51Z biological_process owl:Class GO:0022871 biolink:NamedThing protein-N(PI)-phosphohistidine-sorbose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sorbose(out) = protein histidine + sorbose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl sorbose PTS transporter activity https://github.com/geneontology/go-ontology/issues/17289 RHEA:49296|EC:2.7.1.206 molecular_function owl:Class GO:0060498 biolink:NamedThing retinoic acid receptor signaling pathway involved in lung bud formation The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands contributing to the formation of the primary lung bud. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in lung bud formation biological_process owl:Class GO:1900225 biolink:NamedThing regulation of NLRP3 inflammasome complex assembly Any process that modulates the frequency, rate or extent of NLRP3 inflammasome complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of NALP3 inflammasome complex assembly|regulation of NLRP3 inflammasome activation jl 2012-03-22T04:18:14Z biological_process owl:Class GO:0006555 biolink:NamedThing methionine metabolic process The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl methionine and threonine metabolism|methionine metabolism|methionine and threonine metabolic process UM-BBD_pathwayID:met biological_process owl:Class GO:0034696 biolink:NamedThing response to prostaglandin F Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin F stimulus. tmpzr1t_l9r_go_relaxed.owl response to prostaglandin F stimulus biological_process owl:Class GO:0034694 biolink:NamedThing response to prostaglandin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin stimulus. tmpzr1t_l9r_go_relaxed.owl response to prostaglandin stimulus biological_process owl:Class GO:1904924 biolink:NamedThing negative regulation of mitophagy in response to mitochondrial depolarization Any process that stops, prevents or reduces the frequency, rate or extent of mitophagy in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl downregulation of mitophagy in response to mitochondrial depolarization|down-regulation of mitophagy in response to mitochondrial depolarization|down regulation of mitophagy in response to mitochondrial depolarization|inhibition of mitophagy in response to mitochondrial depolarization pad 2016-01-26T11:23:58Z biological_process owl:Class GO:1990447 biolink:NamedThing U2 snRNP binding Binding to a U2 small nuclear ribonucleoprotein particle. tmpzr1t_l9r_go_relaxed.owl mah 2014-08-06T09:33:38Z molecular_function owl:Class GO:0070990 biolink:NamedThing snRNP binding Binding to a small nuclear ribonucleoprotein particle. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-29T03:54:25Z molecular_function owl:Class GO:0034263 biolink:NamedThing positive regulation of autophagy in response to ER overload The process in which the accumulation of misfolded proteins in the endoplasmic reticulum triggers a response that positively regulates autophagy. tmpzr1t_l9r_go_relaxed.owl autophagy in response to endoplasmic reticulum overload|autophagy in response to ER stress biological_process owl:Class GO:0010508 biolink:NamedThing positive regulation of autophagy Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050541 biolink:NamedThing beta,beta-carotene-9',10'-dioxygenase activity Catalysis of the reaction: beta-carotene + O2 = beta-apo-10'-carotenal + beta-ionone. tmpzr1t_l9r_go_relaxed.owl b,b-carotene-9',10'-dioxygenase activity molecular_function owl:Class GO:1905840 biolink:NamedThing positive regulation of telomeric D-loop disassembly Any process that activates or increases the frequency, rate or extent of telomeric D-loop disassembly. tmpzr1t_l9r_go_relaxed.owl up regulation of telomeric D-loop disassembly|upregulation of telomeric D-loop disassembly|up-regulation of telomeric D-loop disassembly|activation of telomeric D-loop disassembly nc 2017-01-18T11:01:55Z biological_process owl:Class GO:0035207 biolink:NamedThing negative regulation of hemocyte proliferation Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl negative regulation of arthropod blood cell proliferation|down-regulation of hemocyte proliferation|down regulation of hemocyte proliferation|inhibition of hemocyte proliferation|downregulation of hemocyte proliferation biological_process owl:Class GO:0006686 biolink:NamedThing sphingomyelin biosynthetic process The chemical reactions and pathways resulting in the formation of sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine. tmpzr1t_l9r_go_relaxed.owl sphingomyelin synthesis|sphingomyelin anabolism|sphingomyelin biosynthesis|sphingomyelin formation biological_process owl:Class GO:0051142 biolink:NamedThing positive regulation of NK T cell proliferation Any process that activates or increases the frequency, rate or extent of natural killer T cell proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of NT cell proliferation|stimulation of NK T cell proliferation|activation of NK T cell proliferation|up-regulation of NK T cell proliferation|positive regulation of NKT cell proliferation|upregulation of NK T cell proliferation|positive regulation of NK T lymphocyte proliferation|positive regulation of natural killer T cell proliferation|positive regulation of natural T cell proliferation|up regulation of NK T cell proliferation|positive regulation of NK T-lymphocyte proliferation|positive regulation of NK T-cell proliferation biological_process owl:Class GO:0008030 biolink:NamedThing neuronal pentraxin receptor activity Combining with a neuronal pentraxin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl neuronal pentaxin receptor molecular_function owl:Class GO:0000958 biolink:NamedThing mitochondrial mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of mRNA transcribed from the mitochondrial genome and occurring in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006274 biolink:NamedThing DNA replication termination The process in which DNA replication at a replication fork ceases; occurs when the replication fork reaches a specific termination site or when two replication forks meet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033463 biolink:NamedThing GGA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GGA codon. tmpzr1t_l9r_go_relaxed.owl glycine tRNA Note that in the standard genetic code, GGA codes for glycine. molecular_function owl:Class GO:0052575 biolink:NamedThing carbohydrate localization Any process in which a carbohydrate is transported to, or maintained in, a specific location. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl carbohydrate localisation 2010-07-23T04:08:13Z biological_process owl:Class GO:0043873 biolink:NamedThing pyruvate-flavodoxin oxidoreductase activity Catalysis of the reaction: pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. tmpzr1t_l9r_go_relaxed.owl NifJ|pyruvate:flavodoxin oxidoreductase activity RHEA:44140|MetaCyc:PYFLAVOXRE-RXN molecular_function owl:Class GO:1900520 biolink:NamedThing positive regulation of response to pullulan Any process that activates or increases the frequency, rate or extent of response to pullulan. tmpzr1t_l9r_go_relaxed.owl up regulation of response to pullulan|up-regulation of response to pullulan|upregulation of response to pullulan|activation of response to pullulan tt 2012-05-02T04:12:19Z biological_process owl:Class GO:1904954 biolink:NamedThing canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation Any canonical Wnt signaling pathway that is involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway through beta-catenin involved in DA neurogenesis from midbrain floor plate|Wnt receptor signalling pathway through beta-catenin involved in midbrain dopaminergic neuron differentiation|Wnt receptor signalling pathway through beta-catenin involved in midbrain DA neurogenesis|Wnt receptor signaling pathway via beta-catenin involved in midbrain DA neurogenesis|canonical Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|frizzled-1 receptor signaling pathway involved in midbrain dopaminergic neuron production|canonical Wnt-activated signaling pathway involved in midbrain DA neurogenesis|canonical Wnt receptor signaling pathway involved in mDA neuron differentiation|Wnt receptor signaling pathway via beta-catenin involved in midbrain dopaminergic neuron differentiation|canonical Wnt signaling pathway involved in midbrain dopaminergic neuron production|frizzled-1 receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway through beta-catenin involved in mDA neuron differentiation|canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|canonical Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway through beta-catenin involved in midbrain dopaminergic neuron production|canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|canonical Wnt signaling pathway involved in mDA neuron differentiation|Wnt receptor signaling pathway via beta-catenin involved in mDA neuron differentiation|Wnt receptor signaling pathway via beta-catenin involved in midbrain dopaminergic neuron production|frizzled-1 receptor signaling pathway involved in mDA neuron differentiation|canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|canonical Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway through beta-catenin involved in DA neurogenesis from midbrain floor plate|frizzled-1 receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|canonical Wnt receptor signaling pathway involved in midbrain DA neurogenesis|canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|frizzled-1 receptor signaling pathway involved in midbrain DA neurogenesis|Wnt receptor signalling pathway through beta-catenin involved in midbrain dopaminergic neuron production|Wnt receptor signaling pathway through beta-catenin involved in midbrain DA neurogenesis|Wnt receptor signalling pathway through beta-catenin involved in mDA neuron differentiation|canonical Wnt-mediated midbrain DA neuron differentiation|canonical Wnt signaling pathway involved in midbrain DA neurogenesis|Wnt receptor signaling pathway via beta-catenin involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway through beta-catenin involved in midbrain dopaminergic neuron differentiation|canonical Wnt-activated signaling pathway involved in mDA neuron differentiation bf 2016-02-09T11:04:46Z biological_process owl:Class GO:1904953 biolink:NamedThing Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation Any Wnt signaling pathway that is involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in midbrain DA neurogenesis|Wnt-activated signaling pathway involved in mDA neuron differentiation|Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway involved in mDA neuron differentiation|Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|Wg signalling pathway involved in midbrain dopaminergic neuron production|frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|Wg signaling pathway involved in midbrain DA neurogenesis|Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|Wingless signalling pathway involved in mDA neuron differentiation|Wnt receptor signalling pathway involved in mDA neuron differentiation|frizzled signalling pathway involved in midbrain DA neurogenesis|Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|Wg signaling pathway involved in midbrain dopaminergic neuron production|Wg signalling pathway involved in mDA neuron differentiation|Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|Wingless signalling pathway involved in midbrain dopaminergic neuron production|frizzled signaling pathway involved in midbrain dopaminergic neuron production|Wingless signaling pathway involved in mDA neuron differentiation|Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|Wg signalling pathway involved in midbrain DA neurogenesis|frizzled signalling pathway involved in midbrain dopaminergic neuron production|Wnt signaling pathway involved in midbrain DA neurogenesis|Wnt receptor signaling pathway involved in midbrain DA neurogenesis|Wingless signaling pathway involved in midbrain DA neurogenesis|Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|Wingless signaling pathway involved in midbrain dopaminergic neuron production|Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|Wnt-mediated midbrain DA neuron differentiation|Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|Wingless signalling pathway involved in midbrain DA neurogenesis|frizzled signaling pathway involved in mDA neuron differentiation|Wnt signaling pathway involved in midbrain dopaminergic neuron production|Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|Wg signaling pathway involved in mDA neuron differentiation|Wnt-activated signaling pathway involved in midbrain DA neurogenesis|frizzled signaling pathway involved in midbrain DA neurogenesis|Wnt signaling pathway involved in mDA neuron differentiation|Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|frizzled signalling pathway involved in mDA neuron differentiation bf 2016-02-08T12:02:07Z biological_process owl:Class GO:0016631 biolink:NamedThing enoyl-[acyl-carrier-protein] reductase activity Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD(P)+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl enoyl-ACP reductase activity|enoyl-[acyl-carrier protein] reductase activity|enoyl-acyl carrier protein reductase|acyl-ACP dehydrogenase activity MetaCyc:RXN1G-3993|MetaCyc:RXN1G-45|MetaCyc:RXN1G-4140|MetaCyc:RXN1G-2527|Wikipedia:Enoyl-acyl_carrier_protein_reductase|MetaCyc:RXN1G-2544|MetaCyc:RXN1G-3256|MetaCyc:1.3.1.39-RXN|MetaCyc:RXN1G-3232|MetaCyc:RXN1G-3641|MetaCyc:1.3.1.10-RXN|MetaCyc:RXN1G-3667|MetaCyc:RXN1G-3613|EC:1.3.1.9 molecular_function owl:Class GO:0048860 biolink:NamedThing glioblast division The process resulting in the physical partitioning and separation of a glioblast into daughter cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038127 biolink:NamedThing ERBB signaling pathway A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptor tyrosine kinases on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ErbB signaling|EGF receptor family signaling pathway|EGFR family signaling pathway|ERBB signalling pathway bf 2012-03-30T09:23:01Z biological_process owl:Class GO:0060697 biolink:NamedThing positive regulation of phospholipid catabolic process Any process that increases the rate, frequency, or extent of phospholipid catabolism, the chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:28:38Z biological_process owl:Class GO:0007297 biolink:NamedThing ovarian follicle cell migration The directed movement of an ovarian follicle cell that takes place during oogenesis. During egg chamber formation, follicle cells migrate to envelop the germ-line cysts and move in between cysts. At stage 10B, follicle cells migrate centripetally between the nurse cells and the oocyte, enclosing the anterior of the egg. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl follicle cell migration biological_process owl:Class GO:1902162 biolink:NamedThing regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator Any process that modulates the frequency, rate or extent of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. tmpzr1t_l9r_go_relaxed.owl lb 2013-05-22T12:39:18Z biological_process owl:Class GO:0150045 biolink:NamedThing regulation of synaptic signaling by nitric oxide Any process that modulates the frequency, rate or extent of synaptic signaling by nitric oxide. tmpzr1t_l9r_go_relaxed.owl bc 2018-04-23T09:42:25Z biological_process owl:Class GO:0030565 biolink:NamedThing snRNA pseudouridylation guide activity Activity that provides specificity to a pseudouridine synthetase by using base complementarity to guide site-specific pseudouridylations to a small nuclear RNA molecule. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. Note that this term may be useful for annotating snoRNAs. molecular_function owl:Class GO:0050972 biolink:NamedThing detection of mechanical stimulus involved in echolocation The series of events involved in echolocation in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of a reflected sound wave (an echo), which the organism uses to determine the distance to the object that reflected the sound wave. tmpzr1t_l9r_go_relaxed.owl echolocation, sensory transduction of mechanical stimulus|echolocation, detection of mechanical stimulus|echolocation, sensory detection of mechanical stimulus|sensory detection of mechanical stimulus during echolocation|sensory transduction of mechanical stimulus during echolocation biological_process owl:Class GO:0050974 biolink:NamedThing detection of mechanical stimulus involved in sensory perception The series of events in which a mechanical stimulus is received and converted into a molecular signal as part of sensory perception. tmpzr1t_l9r_go_relaxed.owl sensory transduction of mechanical stimulus|sensory detection of mechanical stimulus|sensory transduction of mechanical stimulus during sensory perception|sensory perception, sensory detection of mechanical stimulus|sensory perception, sensory transduction of mechanical stimulus|sensory detection of mechanical stimulus during sensory perception biological_process owl:Class GO:0052692 biolink:NamedThing raffinose alpha-galactosidase activity Catalysis of the reaction: raffinose + H2O = alpha-D-galactose + sucrose. tmpzr1t_l9r_go_relaxed.owl raffinose galactohydrolase activity|alkaline alpha-galactosidase activity|raffinose-specific alkaline alpha-galactosidase activity MetaCyc:RXN-11502|EC:3.2.1.22|KEGG_REACTION:R01103 molecular_function owl:Class GO:0004557 biolink:NamedThing alpha-galactosidase activity Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase. tmpzr1t_l9r_go_relaxed.owl alpha-D-galactosidase activity|alpha-galactoside galactohydrolase activity|alpha-D-galactoside galactohydrolase activity|alpha-galactosidase A|melibiase activity RHEA:28663|EC:3.2.1.22|MetaCyc:ALPHAGALACTOSID-RXN|Reactome:R-HSA-1605736 molecular_function owl:Class GO:0010387 biolink:NamedThing COP9 signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome. tmpzr1t_l9r_go_relaxed.owl signalosome assembly biological_process owl:Class GO:1990643 biolink:NamedThing cellular response to granulocyte colony-stimulating factor Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T19:22:44Z biological_process owl:Class GO:0061696 biolink:NamedThing pituitary gonadotropin complex A protein complex that is a protein hormone secreted by gonadotrope cells of the anterior pituitary of vertebrates. capable of regulating normal growth, sexual development, and reproductive function. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-06T13:11:18Z cellular_component owl:Class GO:1900559 biolink:NamedThing austinol catabolic process The chemical reactions and pathways resulting in the breakdown of austinol. tmpzr1t_l9r_go_relaxed.owl austinol breakdown|austinol catabolism|austinol degradation di 2012-05-15T06:27:22Z biological_process owl:Class GO:1900558 biolink:NamedThing austinol metabolic process The chemical reactions and pathways involving austinol. tmpzr1t_l9r_go_relaxed.owl austinol metabolism di 2012-05-15T06:26:58Z biological_process owl:Class GO:0046389 biolink:NamedThing deoxyribose 5-phosphate metabolic process The chemical reactions and pathways involving deoxyribose 5-phosphate, the phosphorylated sugar 5-phospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyribose 5-phosphate metabolism biological_process owl:Class GO:0043654 biolink:NamedThing recognition of apoptotic cell The process in which a cell interprets signals (in the form of specific proteins and lipids) on the surface of a dying cell which it will engulf and remove by phagocytosis. tmpzr1t_l9r_go_relaxed.owl detection of apoptotic cell corpse|recognition of cell corpse|recognition of apoptotic cell corpse|detection of cell corpse|detection of apoptotic cell biological_process owl:Class GO:0006910 biolink:NamedThing phagocytosis, recognition The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell. tmpzr1t_l9r_go_relaxed.owl recognition of phagocytosed substance by phagocytic cell Note that cell surface molecules involved in the direct binding of bacteria may be also annotated to the molecular function term 'bacterial cell surface binding ; GO:0051635'. Note that cell surface molecules involved in the direct binding to opsonins such as complement components or antibodies may be also annotated to the term 'opsonin binding ; GO:0001846'. biological_process owl:Class GO:0009183 biolink:NamedThing purine deoxyribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside diphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside diphosphate biosynthesis|purine deoxyribonucleoside diphosphate synthesis|purine deoxyribonucleoside diphosphate anabolism|purine deoxyribonucleoside diphosphate formation biological_process owl:Class GO:0042859 biolink:NamedThing chrysobactin catabolic process The chemical reactions and pathways resulting in the breakdown of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). tmpzr1t_l9r_go_relaxed.owl chrysobactin breakdown|chrysobactin degradation|chrysobactin catabolism biological_process owl:Class GO:0031699 biolink:NamedThing beta-3 adrenergic receptor binding Binding to a beta-3 adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl beta-3 adrenergic receptor ligand molecular_function owl:Class GO:1905283 biolink:NamedThing negative regulation of epidermal growth factor receptor signaling pathway involved in heart process Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway involved in heart process. tmpzr1t_l9r_go_relaxed.owl down-regulation of EGF receptor signaling pathway involved in heart process|inhibition of EGF receptor signalling pathway involved in heart process|downregulation of EGFR signaling pathway involved in cardiac process|down regulation of epidermal growth factor receptor signaling pathway involved in heart process|inhibition of epidermal growth factor receptor signaling pathway involved in cardiac process|negative regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|downregulation of ERBB1 signaling pathway involved in heart process|downregulation of epidermal growth factor receptor signalling pathway involved in heart process|down-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|down-regulation of ERBB1 signaling pathway involved in heart process|down regulation of EGF receptor signalling pathway involved in cardiac process|inhibition of EGF receptor signalling pathway involved in cardiac process|inhibition of epidermal growth factor receptor signalling pathway involved in cardiac process|downregulation of EGFR signaling pathway involved in heart process|down regulation of ERBB1 signaling pathway involved in heart process|inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|down regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|inhibition of ERBB1 signaling pathway involved in cardiac process|down-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|down-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|negative regulation of EGF receptor signalling pathway involved in cardiac process|down-regulation of EGFR signaling pathway involved in heart process|downregulation of EGF receptor signaling pathway involved in cardiac process|negative regulation of EGF receptor signalling pathway involved in heart process|downregulation of ERBB1 signaling pathway involved in cardiac process|inhibition of EGFR signaling pathway involved in cardiac process|down regulation of EGF receptor signaling pathway involved in heart process|down regulation of ERBB1 signaling pathway involved in cardiac process|negative regulation of EGF receptor signaling pathway involved in cardiac process|negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|downregulation of epidermal growth factor receptor signaling pathway involved in cardiac process|down-regulation of epidermal growth factor receptor signaling pathway involved in heart process|inhibition of EGFR signaling pathway involved in heart process|negative regulation of EGFR signaling pathway involved in cardiac process|down regulation of epidermal growth factor receptor signalling pathway involved in heart process|negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|down-regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|down-regulation of EGF receptor signaling pathway involved in cardiac process|negative regulation of ERBB1 signaling pathway involved in heart process|downregulation of EGF receptor signalling pathway involved in heart process|negative regulation of ERBB1 signaling pathway involved in cardiac process|down regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|downregulation of epidermal growth factor receptor signalling pathway involved in cardiac process|inhibition of ERBB1 signaling pathway involved in heart process|inhibition of EGF receptor signaling pathway involved in cardiac process|downregulation of epidermal growth factor receptor signaling pathway involved in heart process|inhibition of epidermal growth factor receptor signaling pathway involved in heart process|inhibition of EGF receptor signaling pathway involved in heart process|down-regulation of EGF receptor signalling pathway involved in cardiac process|down-regulation of ERBB1 signaling pathway involved in cardiac process|downregulation of EGF receptor signalling pathway involved in cardiac process|down regulation of epidermal growth factor receptor signalling pathway involved in cardiac process|down regulation of EGFR signaling pathway involved in heart process|downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|negative regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|down regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|down-regulation of EGF receptor signalling pathway involved in heart process|negative regulation of EGF receptor signaling pathway involved in heart process|inhibition of epidermal growth factor receptor signalling pathway involved in heart process|downregulation of EGF receptor signaling pathway involved in heart process|down regulation of EGFR signaling pathway involved in cardiac process|negative regulation of epidermal growth factor receptor signalling pathway involved in heart process|down-regulation of EGFR signaling pathway involved in cardiac process|down regulation of EGF receptor signaling pathway involved in cardiac process|down regulation of EGF receptor signalling pathway involved in heart process|down-regulation of epidermal growth factor receptor signalling pathway involved in heart process|negative regulation of EGFR signaling pathway involved in heart process bc 2016-06-20T14:40:49Z biological_process owl:Class GO:0000322 biolink:NamedThing storage vacuole A vacuole that functions primarily in the storage of materials, including nutrients, pigments, waste products, and small molecules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070204 biolink:NamedThing 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity Catalysis of the reaction: 2-oxoglutarate + H(+) + isochorismate = 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate + CO(2). tmpzr1t_l9r_go_relaxed.owl SEPHCHC synthase activity|MenD MetaCyc:2.5.1.64-RXN|EC:2.2.1.9|RHEA:25593|KEGG_REACTION:R08165 Note that this function was formerly EC:4.1.3.18. molecular_function owl:Class GO:1901945 biolink:NamedThing miltiradiene catabolic process The chemical reactions and pathways resulting in the breakdown of miltiradiene. tmpzr1t_l9r_go_relaxed.owl miltiradiene degradation|miltiradiene breakdown|miltiradiene catabolism ms 2013-02-18T15:50:27Z biological_process owl:Class GO:1901944 biolink:NamedThing miltiradiene metabolic process The chemical reactions and pathways involving miltiradiene. tmpzr1t_l9r_go_relaxed.owl miltiradiene metabolism ms 2013-02-18T15:50:23Z biological_process owl:Class GO:0140195 biolink:NamedThing positive regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process Any process that activates or increases the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:13:11Z biological_process owl:Class GO:0071879 biolink:NamedThing positive regulation of adenylate cyclase-activating adrenergic receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the adenylate cyclase-activating adrenergic receptor protein signaling pathway. An adrenergic receptor signaling pathway is the series of molecular signals generated as a consequence of an adrenergic receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl positive regulation of adrenergic receptor signalling pathway|positive regulation of adrenergic receptor signaling pathway mah 2010-09-13T04:15:57Z biological_process owl:Class GO:1900632 biolink:NamedThing tridecane biosynthetic process The chemical reactions and pathways resulting in the formation of tridecane. tmpzr1t_l9r_go_relaxed.owl tridecane synthesis|tridecane anabolism|tridecane biosynthesis|tridecane formation tt 2012-05-21T06:41:37Z biological_process owl:Class GO:0102065 biolink:NamedThing patchoulene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> diphosphoric acid + gamma-patchoulene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10602 molecular_function owl:Class GO:0050130 biolink:NamedThing N-methyl-2-oxoglutaramate hydrolase activity Catalysis of the reaction: N-methyl-2-oxoglutaramate + H(2)O = 2-oxoglutarate + methylammonium. tmpzr1t_l9r_go_relaxed.owl N-methyl-2-oxoglutaramate methylamidohydrolase activity|5-hydroxy-N-methylpyroglutamate synthase activity EC:3.5.1.36|MetaCyc:N-METHYL-2-OXOGLUTARAMATE-HYDROLASE-RXN|RHEA:24108|KEGG_REACTION:R01587 molecular_function owl:Class GO:0003427 biolink:NamedThing regulation of cytoskeleton polarization involved in growth plate cartilage chondrocyte division The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell that modulates the rate, frequency, or extent of the polarization of cytoskeletal structures in a growth plate cartilage chondrocyte. This process results in the oriented division of the cell. tmpzr1t_l9r_go_relaxed.owl regulation of cytoskeleton polarization involved in growth plate cartilage chondrocyte division by planar cell polarity pathway dph 2009-12-22T11:43:29Z biological_process owl:Class GO:0010121 biolink:NamedThing arginine catabolic process to proline via ornithine The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline, via ornithine. tmpzr1t_l9r_go_relaxed.owl arginine degradation to proline via ornithine|arginine breakdown to proline via ornithine MetaCyc:ARGORNPROST-PWY biological_process owl:Class GO:0019493 biolink:NamedThing arginine catabolic process to proline The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline. tmpzr1t_l9r_go_relaxed.owl arginine degradation to proline|arginine breakdown to proline MetaCyc:ARG-PRO-PWY biological_process owl:Class GO:0102470 biolink:NamedThing 6C-naringenin dibenzoylmethane tautomer glucosyltransferase activity Catalysis of the reaction: 2,4,4',6-tetrahydroxydibenzoylmethane + UDP-alpha-D-glucose <=> 6C-glucosyl-2-hydroxynaringenin + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14075 molecular_function owl:Class GO:1905046 biolink:NamedThing positive regulation of Schwann cell proliferation involved in axon regeneration Any process that activates or increases the frequency, rate or extent of Schwann cell proliferation involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl upregulation of Schwann cell proliferation involved in axon regeneration|up-regulation of Schwann cell proliferation involved in axon regeneration|activation of Schwann cell proliferation involved in axon regeneration|up regulation of Schwann cell proliferation involved in axon regeneration rph 2016-03-11T14:47:54Z biological_process owl:Class GO:0002808 biolink:NamedThing regulation of antibacterial peptide biosynthetic process Any process that modulates the frequency, rate, or extent of antibacterial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002786 biolink:NamedThing regulation of antibacterial peptide production Any process that modulates the frequency, rate, or extent of antibacterial peptide production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007179 biolink:NamedThing transforming growth factor beta receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl TGF-beta receptor signalling pathway|TGF-beta receptor signaling pathway|transforming growth factor beta receptor signalling pathway|TGFbeta receptor signaling pathway|TGFbeta receptor signalling pathway biological_process owl:Class GO:0072118 biolink:NamedThing pronephros structural organization The process that contributes to the act of creating the structural organization of the pronephros. This process pertains to the physical shaping of a rudimentary structure. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life. tmpzr1t_l9r_go_relaxed.owl pronephros structural organisation|pronephric kidney structural organization mah 2010-02-22T11:21:38Z biological_process owl:Class GO:1905407 biolink:NamedThing regulation of creatine transmembrane transporter activity Any process that modulates the frequency, rate or extent of creatine transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl bc 2016-08-25T15:08:48Z biological_process owl:Class GO:0033403 biolink:NamedThing UUA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UUA codon. tmpzr1t_l9r_go_relaxed.owl TTA codon-amino acid adaptor activity|leucine tRNA Note that in the standard genetic code, TTA codes for leucine. molecular_function owl:Class GO:1904727 biolink:NamedThing negative regulation of replicative senescence Any process that stops, prevents or reduces the frequency, rate or extent of replicative senescence. tmpzr1t_l9r_go_relaxed.owl down regulation of replicative senescence|inhibition of replicative senescence|downregulation of replicative senescence|down-regulation of replicative senescence rph 2015-10-14T13:11:31Z biological_process owl:Class GO:1905103 biolink:NamedThing integral component of lysosomal membrane The component of the lysosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of lysosome membrane|integral to lysosomal membrane bf 2016-04-04T10:29:16Z cellular_component owl:Class GO:0046978 biolink:NamedThing TAP1 binding Binding to the TAP1 subunit of TAP (transporter associated with antigen processing) protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046977 biolink:NamedThing TAP binding Binding to TAP protein, transporter associated with antigen processing protein. TAP protein is a heterodimeric peptide transporter consisting of the subunits TAP1 and TAP2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048538 biolink:NamedThing thymus development The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components. tmpzr1t_l9r_go_relaxed.owl Note that this term is reserved for annotation of gene products involved in the formation of the thymus itself, not for gene products involved in T cell differentiation in the thymus or elsewhere. biological_process owl:Class GO:0031766 biolink:NamedThing type 3 galanin receptor binding Binding to a type 3 galanin receptor. tmpzr1t_l9r_go_relaxed.owl type 3 galanin receptor ligand molecular_function owl:Class GO:0031763 biolink:NamedThing galanin receptor binding Binding to a galanin receptor. tmpzr1t_l9r_go_relaxed.owl galanin receptor ligand molecular_function owl:Class GO:0110105 biolink:NamedThing mRNA cleavage and polyadenylation specificity factor complex assembly The aggregation, arrangement and bonding together of a set of components to form the mRNA cleavage and polyadenylation specificity factor complex. tmpzr1t_l9r_go_relaxed.owl kmv 2018-04-13T19:05:17Z biological_process owl:Class GO:0043601 biolink:NamedThing nuclear replisome A multi-component enzymatic machine at the nuclear replication fork, which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901083 biolink:NamedThing pyrrolizidine alkaloid metabolic process The chemical reactions and pathways involving pyrrolizidine alkaloid. tmpzr1t_l9r_go_relaxed.owl pyrrolizidine alkaloid metabolism yaf 2012-07-05T10:27:56Z biological_process owl:Class GO:1905019 biolink:NamedThing negative regulation of methionine-tRNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of methionine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of methionine translase activity|inhibition of methionyl-transfer ribonucleic acid synthetase activity|downregulation of MetRS activity|down-regulation of methionine-tRNA ligase activity|down regulation of L-methionine:tRNAMet ligase (AMP-forming)|down-regulation of MetRS activity|negative regulation of methionyl-tRNA synthetase activity|negative regulation of methionyl-transfer RNA synthetase activity|down regulation of methionine-tRNA ligase activity|down regulation of methionyl-transfer ribonucleic acid synthetase activity|inhibition of MetRS activity|negative regulation of methionyl-transfer ribonucleate synthetase activity|downregulation of methionine-tRNA ligase activity|downregulation of methionyl-transfer ribonucleic acid synthetase activity|down-regulation of methionyl-transfer ribonucleic acid synthetase activity|negative regulation of methionyl-transfer ribonucleic acid synthetase activity|inhibition of methionyl-transfer ribonucleate synthetase activity|downregulation of methionyl-transfer ribonucleate synthetase activity|down regulation of methionine translase activity|inhibition of methionyl-transfer RNA synthetase activity|downregulation of L-methionine:tRNAMet ligase (AMP-forming)|inhibition of methionyl-tRNA synthetase activity|inhibition of methionine-tRNA ligase activity|down regulation of methionyl-tRNA synthetase activity|down-regulation of methionyl-transfer RNA synthetase activity|down-regulation of L-methionine:tRNAMet ligase (AMP-forming)|down regulation of methionyl-transfer RNA synthetase activity|downregulation of methionine translase activity|downregulation of methionyl-tRNA synthetase activity|negative regulation of methionine translase activity|down-regulation of methionyl-tRNA synthetase activity|negative regulation of L-methionine:tRNAMet ligase (AMP-forming)|inhibition of methionine translase activity|downregulation of methionyl-transfer RNA synthetase activity|inhibition of L-methionine:tRNAMet ligase (AMP-forming)|down-regulation of methionyl-transfer ribonucleate synthetase activity|negative regulation of MetRS activity|down regulation of MetRS activity|down regulation of methionyl-transfer ribonucleate synthetase activity sl 2016-03-03T19:02:48Z biological_process owl:Class GO:1905018 biolink:NamedThing regulation of methionine-tRNA ligase activity Any process that modulates the frequency, rate or extent of methionine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of methionyl-transfer ribonucleate synthetase activity|regulation of L-methionine:tRNAMet ligase (AMP-forming)|regulation of methionyl-tRNA synthetase activity|regulation of methionyl-transfer RNA synthetase activity|regulation of methionyl-transfer ribonucleic acid synthetase activity|regulation of MetRS activity|regulation of methionine translase activity sl 2016-03-03T19:02:39Z biological_process owl:Class GO:0047991 biolink:NamedThing hydroxylamine oxidase activity Catalysis of the reaction: hydroxylamine + O(2) = H(2)O + H(+) + nitrite. tmpzr1t_l9r_go_relaxed.owl hydroxylamine oxidoreductase|hydroxylamine:oxygen oxidoreductase activity|HAO MetaCyc:HAONITRO-RXN|KEGG_REACTION:R00793|RHEA:19969|EC:1.7.3.6 molecular_function owl:Class GO:0030517 biolink:NamedThing negative regulation of axon extension Any process that stops, prevents, or reduces the frequency, rate or extent of axon outgrowth. tmpzr1t_l9r_go_relaxed.owl down-regulation of axon extension|down regulation of axon extension|downregulation of axon extension|inhibition of axon extension biological_process owl:Class GO:0043468 biolink:NamedThing regulation of fucose catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of fucose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021522 biolink:NamedThing spinal cord motor neuron differentiation The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021953 biolink:NamedThing central nervous system neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097070 biolink:NamedThing ductus arteriosus closure The morphogenesis process in which the ductus arteriosus changes to no longer permit blood flow after birth. The ductus arteriosus is the shunt between the aorta and the pulmonary artery which allows blood to bypass the fetus' lungs. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-15T04:00:46Z biological_process owl:Class GO:0071239 biolink:NamedThing cellular response to streptomycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a streptomycin stimulus. Streptomycin is a commonly used antibiotic in cell culture media which acts only on prokaryotes and blocks transition from initiation complex to chain elongating ribosome. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:25:59Z biological_process owl:Class GO:0071236 biolink:NamedThing cellular response to antibiotic Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:23:49Z biological_process owl:Class GO:0048080 biolink:NamedThing negative regulation of cuticle pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl downregulation of cuticle pigmentation|down-regulation of cuticle pigmentation|down regulation of cuticle pigmentation|inhibition of cuticle pigmentation biological_process owl:Class GO:0008153 biolink:NamedThing para-aminobenzoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. tmpzr1t_l9r_go_relaxed.owl vitamin Bx biosynthesis|4-aminobenzoic acid biosynthesis|PABA biosynthetic process|p-aminobenzoic acid biosynthesis|PABA biosynthesis|para-aminobenzoic acid biosynthesis|para-aminobenzoic acid synthesis|vitamin Bx biosynthetic process|para-aminobenzoic acid formation|para-aminobenzoic acid anabolism|p-aminobenzoic acid biosynthetic process|4-aminobenzoic acid biosynthetic process biological_process owl:Class GO:2000056 biolink:NamedThing regulation of Wnt signaling pathway involved in digestive tract morphogenesis Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in digestive tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of Wnt receptor signalling pathway involved in digestive tract morphogenesis|regulation of Wnt receptor signaling pathway involved in digestive tract morphogenesis|regulation of Wnt-activated signaling pathway involved in digestive tract morphogenesis jl 2010-08-20T01:17:27Z biological_process owl:Class GO:0034598 biolink:NamedThing phosphothreonine lyase activity Catalysis of the removal of the phosphate group from phosphothreonine by cleavage of the C-OP bond with the concomitant abstraction of the alpha proton, generating a double bond-containing product. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044501 biolink:NamedThing modulation of signal transduction in other organism The process in which an organism effects a change in a signal transduction process - a cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell - in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T03:48:19Z biological_process owl:Class GO:1905676 biolink:NamedThing positive regulation of adaptive immune memory response Any process that activates or increases the frequency, rate or extent of adaptive immune memory response. tmpzr1t_l9r_go_relaxed.owl activation of adaptive immune memory response|upregulation of adaptive immune memory response|up-regulation of adaptive immune memory response|up regulation of adaptive immune memory response tb 2016-11-11T22:24:49Z biological_process owl:Class GO:1905674 biolink:NamedThing regulation of adaptive immune memory response Any process that modulates the frequency, rate or extent of adaptive immune memory response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T22:24:33Z biological_process owl:Class GO:0019896 biolink:NamedThing axonal transport of mitochondrion The directed movement of mitochondria along microtubules in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl axon transport of mitochondria biological_process owl:Class GO:0061007 biolink:NamedThing hepaticobiliary system process An system process carried out by any of the organs or tissues of the hepaticobiliary system. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. tmpzr1t_l9r_go_relaxed.owl hepatobiliary system process dph 2010-01-22T09:09:10Z biological_process owl:Class GO:0060381 biolink:NamedThing positive regulation of single-stranded telomeric DNA binding Any process that increases the frequency, rate or extent of single-stranded telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl positive regulation of telomeric ssDNA binding biological_process owl:Class GO:1904744 biolink:NamedThing positive regulation of telomeric DNA binding Any process that activates or increases the frequency, rate or extent of telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of telomeric repeat binding|activation of telomere binding|positive regulation of telomere binding|positive regulation of telomeric repeat binding|activation of telomeric repeat binding|upregulation of telomere binding|up-regulation of telomere binding|up regulation of telomeric repeat binding|upregulation of telomeric DNA binding|up regulation of telomere binding|up regulation of telomeric DNA binding|upregulation of telomeric repeat binding|activation of telomeric DNA binding|up-regulation of telomeric DNA binding nc 2015-10-19T12:19:01Z biological_process owl:Class GO:0106013 biolink:NamedThing negative regulation of protein localization to cell cortex of cell tip Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to the cell cortex of the cell tip. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-28T13:45:38Z biological_process owl:Class GO:1990895 biolink:NamedThing regulation of protein localization to cell cortex of cell tip Any process that modulates the frequency, rate or extent of protein localization to cell cortex of cell tip. tmpzr1t_l9r_go_relaxed.owl vw 2015-11-04T21:53:15Z biological_process owl:Class GO:2000029 biolink:NamedThing regulation of proanthocyanidin biosynthetic process Any process that modulates the frequency, rate or extent of proanthocyanidin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of proanthocyanidin anabolism|regulation of proanthocyanidin synthesis|regulation of proanthocyanidin biosynthesis|regulation of proanthocyanidin formation tb 2010-08-05T11:28:08Z biological_process owl:Class GO:0055023 biolink:NamedThing positive regulation of cardiac muscle tissue growth Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle growth. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart muscle growth|activation of cardiac muscle growth|up-regulation of cardiac muscle growth|up regulation of cardiac muscle growth|upregulation of cardiac muscle growth|stimulation of cardiac muscle growth biological_process owl:Class GO:0000949 biolink:NamedThing aromatic amino acid family catabolic process to alcohol via Ehrlich pathway The chemical reactions and pathways involving the catabolism of aromatic amino acids to produce aromatic alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanol, 4-hydroxyphenylethanol, or tryptophol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032305 biolink:NamedThing positive regulation of icosanoid secretion Any process that activates or increases the frequency, rate or extent of the controlled release of an icosanoid from a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of icosanoid secretion|up regulation of icosanoid secretion|activation of icosanoid secretion|up-regulation of icosanoid secretion|positive regulation of eicosanoid secretion|upregulation of icosanoid secretion biological_process owl:Class GO:0102322 biolink:NamedThing 2-propylphenol monooxygenase activity Catalysis of the reaction: 2-propylphenol + O2 + NADH + H+ = 3-propylcatechol + H2O + NAD. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13151 molecular_function owl:Class GO:0034102 biolink:NamedThing erythrocyte clearance The selective elimination of erythrocytes from the body by autoregulatory mechanisms. tmpzr1t_l9r_go_relaxed.owl red blood cell clearance|RBC clearance|neocytolysis Note that this term is intended for annotation of self-gene products that lead to elimination of erythrocytes without the involvement of a symbiont. biological_process owl:Class GO:0016361 biolink:NamedThing activin receptor activity, type I Combining with activin-bound type II activin receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of activin signals. tmpzr1t_l9r_go_relaxed.owl type I activin receptor activity molecular_function owl:Class GO:0017002 biolink:NamedThing activin-activated receptor activity Combining with activin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Activin is one of two gonadal glycoproteins related to transforming growth factor beta. tmpzr1t_l9r_go_relaxed.owl activin receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand activin. For binding to other extracellular ligands, consider annotating to terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:0009986 biolink:NamedThing cell surface The external part of the cell wall and/or plasma membrane. tmpzr1t_l9r_go_relaxed.owl cell associated|cell bound Note that this term is intended to annotate gene products that are attached (integrated or loosely bound) to the plasma membrane or cell wall. GO:0009928|GO:0009929 cellular_component owl:Class GO:0031633 biolink:NamedThing xanthophore A chromatophore containing yellow pigment. tmpzr1t_l9r_go_relaxed.owl Note that this term refers to a subcellular structure, and should not be confused with the specialized cells known as xanthophores, which produce yellow pigment and are found in fish and amphibian skin. Note that several terms in the biological process ontology ('xanthophore differentiation ; GO:0050936' and its children) refer to xanthophores in the sense of pigment-producing cells. cellular_component owl:Class GO:0051756 biolink:NamedThing meiotic sister chromatid centromere separation The cell cycle process in which the centromeres of sister chromatids are physically detached from each other during meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046171 biolink:NamedThing octanol biosynthetic process The chemical reactions and pathways resulting in the formation of octanol, the 8-carbon alcohol with the formula C8H17OH. tmpzr1t_l9r_go_relaxed.owl octanol anabolism|octanol formation|octanol biosynthesis|octanol synthesis biological_process owl:Class GO:0002724 biolink:NamedThing regulation of T cell cytokine production Any process that modulates the frequency, rate, or extent of T cell cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte cytokine production|regulation of T-cell cytokine production|regulation of T-lymphocyte cytokine production biological_process owl:Class GO:0047720 biolink:NamedThing indoleacetaldoxime dehydratase activity Catalysis of the reaction: (indol-3-yl)acetaldehyde oxime = (indol-3-yl)acetonitrile + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3-indoleacetaldoxime hydro-lyase activity|(indol-3-yl)acetaldehyde-oxime hydro-lyase [(indol-3-yl)acetonitrile-forming]|indoleacetaldoxime hydro-lyase activity|indole-3-acetaldehyde-oxime hydro-lyase activity|indole-3-acetaldoxime hydro-lyase activity|(indol-3-yl)acetaldehyde-oxime hydro-lyase activity KEGG_REACTION:R04093|RHEA:23156|EC:4.99.1.6|MetaCyc:RXN-1403 molecular_function owl:Class GO:0071958 biolink:NamedThing new mitotic spindle pole body The spindle pole body that is formed by spindle pole body duplication, and to which proteins involved in mitotic exit signaling (for example, the septation initiation network in fission yeast) localize. tmpzr1t_l9r_go_relaxed.owl new SPB mah 2011-06-01T02:34:34Z cellular_component owl:Class GO:0044732 biolink:NamedThing mitotic spindle pole body The microtubule organizing center that forms as part of the mitotic cell cycle; functionally homologous to the animal cell centrosome. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-06T15:44:02Z cellular_component owl:Class GO:0002751 biolink:NamedThing antigen processing and presentation following receptor mediated endocytosis Antigen processing and presentation which is initiated by uptake of antigen receptor-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002745 biolink:NamedThing antigen processing and presentation initiated by receptor mediated uptake of antigen Antigen processing and presentation which is initiated by uptake of antigen bound to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046037 biolink:NamedThing GMP metabolic process The chemical reactions and pathways involving GMP, guanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl GMP metabolism biological_process owl:Class GO:0031205 biolink:NamedThing endoplasmic reticulum Sec complex An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000004 biolink:NamedThing regulation of metanephric S-shaped body morphogenesis Any process that modulates the frequency, rate or extent of metanephric S-shaped body morphogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-30T02:14:33Z biological_process owl:Class GO:1900746 biolink:NamedThing regulation of vascular endothelial growth factor signaling pathway Any process that modulates the frequency, rate or extent of vascular endothelial growth factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of VEGF signaling|regulation of vascular endothelial growth factor signalling pathway|regulation of VEGF-activated signaling pathway pm 2012-05-29T08:28:06Z biological_process owl:Class GO:1905884 biolink:NamedThing negative regulation of triglyceride transport Any process that stops, prevents or reduces the frequency, rate or extent of triglyceride transport. tmpzr1t_l9r_go_relaxed.owl downregulation of triglyceride transport|down regulation of triacylglycerol transport|down-regulation of triglyceride transport|inhibition of triacylglycerol transport|down regulation of triglyceride transport|negative regulation of triacylglycerol transport|inhibition of triglyceride transport|downregulation of triacylglycerol transport|down-regulation of triacylglycerol transport rz 2017-01-31T11:32:39Z biological_process owl:Class GO:1905883 biolink:NamedThing regulation of triglyceride transport Any process that modulates the frequency, rate or extent of triglyceride transport. tmpzr1t_l9r_go_relaxed.owl regulation of triacylglycerol transport rz 2017-01-31T11:32:29Z biological_process owl:Class GO:0030590 biolink:NamedThing first cell cycle pseudocleavage A process that occurs during the first cell cycle in an embryo, in which anterior cortical contractions culminate in a single partial constriction of the embryo called the pseudocleavage furrow. An example of this process is found in nematode worms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030588 biolink:NamedThing pseudocleavage Partial constriction of the cytoplasm of a cell to form a furrow that resembles a cleavage furrow but does not complete cytokinesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060094 biolink:NamedThing positive regulation of synaptic transmission, glycinergic Any process that activates or increases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine. tmpzr1t_l9r_go_relaxed.owl positive regulation of glycinergic synaptic transmission biological_process owl:Class GO:0060092 biolink:NamedThing regulation of synaptic transmission, glycinergic Any process that modulates the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016362 biolink:NamedThing activin receptor activity, type II Combining with activin to initiate a change in cell activity; upon ligand binding, binds to and catalyses the phosphorylation of a type I activin receptor. tmpzr1t_l9r_go_relaxed.owl type II activin receptor activity Reactome:R-HSA-201443 molecular_function owl:Class GO:0008311 biolink:NamedThing double-stranded DNA 3'-5' exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl double-stranded DNA specific 3'-5' exodeoxyribonuclease activity molecular_function owl:Class GO:1901973 biolink:NamedThing proline binding Binding to proline. tmpzr1t_l9r_go_relaxed.owl pm 2013-02-26T14:58:01Z molecular_function owl:Class GO:0110147 biolink:NamedThing protein maturation by nickel ion transfer A process that contributes to the delivery of nickel ions to a target protein to facilitate its maturation. tmpzr1t_l9r_go_relaxed.owl kmv 2019-05-31T14:41:20Z biological_process owl:Class GO:0035635 biolink:NamedThing entry of bacterium into host cell The process in which a bacterium enters a host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl bacterial entry into host cell|invasion of bacteria into host cell bf 2011-01-13T02:26:54Z biological_process owl:Class GO:0072056 biolink:NamedThing pyramid development The process whose specific outcome is the progression of the kidney pyramids over time, from its formation to the mature structure. Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts. tmpzr1t_l9r_go_relaxed.owl renal pyramid development|pyramids development|kidney pyramid development|renal medulla development mah 2010-01-25T04:01:36Z biological_process owl:Class GO:0002272 biolink:NamedThing plasmacytoid dendritic cell differentiation involved in immune response The process in which an immature plasmacytoid dendritic cell acquires the specialized features of a mature plasmacytoid dendritic cell contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl plasmacytoid dendritic cell differentiation during immune response biological_process owl:Class GO:0055039 biolink:NamedThing trichocyst A crystalline exocytotic organelle composed of small, acidic proteins existing primarily as disulphide-linked dimers. The trichocyst is an organelle that releases long filamentous proteins that capture predators in net-like structures, to slow them down when the cell is disturbed. The protein is nontoxic and shaped like a long, striated, fibrous shaft. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Trichocyst cellular_component owl:Class GO:0043264 biolink:NamedThing extracellular non-membrane-bounded organelle Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell. tmpzr1t_l9r_go_relaxed.owl extracellular non-membrane-enclosed organelle cellular_component owl:Class GO:0001616 biolink:NamedThing growth hormone secretagogue receptor activity Combining with ghrelin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl ghrelin receptor activity molecular_function owl:Class GO:0071482 biolink:NamedThing cellular response to light stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:03:49Z biological_process owl:Class GO:0048264 biolink:NamedThing determination of ventral identity The regionalization process that results in the determination of the identity of part of an organism or organ where those parts are of the type that occur in the ventral region. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl determination of abaxial identity biological_process owl:Class GO:0009953 biolink:NamedThing dorsal/ventral pattern formation The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. tmpzr1t_l9r_go_relaxed.owl dorsal/ventral pattern specification|dorsoventral pattern formation|dorsal-ventral pattern formation biological_process owl:Class GO:0047371 biolink:NamedThing butyrate-acetoacetate CoA-transferase activity Catalysis of the reaction: acetoacetate + butanoyl-CoA = acetoacetyl-CoA + butanoate. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA-acetoacetate CoA-transferase activity|butyryl coenzyme A-acetoacetate coenzyme A-transferase activity|butanoyl-CoA:acetoacetate CoA-transferase activity KEGG_REACTION:R01365|EC:2.8.3.9|MetaCyc:2.8.3.9-RXN|RHEA:12961 molecular_function owl:Class GO:1904252 biolink:NamedThing negative regulation of bile acid metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of bile acid metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of bile acid metabolism|inhibition of bile acid metabolism|down regulation of bile acid metabolism|downregulation of bile acid metabolic process|down-regulation of bile acid metabolic process|downregulation of bile acid metabolism|down regulation of bile acid metabolic process|down-regulation of bile acid metabolism|inhibition of bile acid metabolic process bf 2015-05-20T11:04:35Z biological_process owl:Class GO:0009677 biolink:NamedThing double fertilization forming two zygotes Rudimentary double fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the ventral canal cell nucleus to form a second zygote, which soon degenerates. An example of this process is found in the Gnetophytes, such as Welwitschia mirabilis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009566 biolink:NamedThing fertilization The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy). tmpzr1t_l9r_go_relaxed.owl syngamy https://github.com/geneontology/go-ontology/issues/20176 Wikipedia:Fertilisation biological_process owl:Class GO:0035623 biolink:NamedThing renal glucose absorption A renal system process in which glucose is taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl nephron glucose absorption|glucose reabsorption bf 2010-12-08T04:14:23Z biological_process owl:Class GO:1902069 biolink:NamedThing negative regulation of sphingolipid mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of sphingolipid signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of sphingolipid signaling pathway|down-regulation of sphingolipid signaling pathway|down regulation of sphingolipid mediated signaling pathway|down regulation of sphingolipid signaling pathway|downregulation of sphingolipid signaling pathway|down-regulation of sphingolipid mediated signaling pathway|downregulation of sphingolipid mediated signaling pathway|inhibition of sphingolipid mediated signaling pathway|inhibition of sphingolipid signaling pathway bf 2013-04-18T13:24:51Z biological_process owl:Class GO:1903006 biolink:NamedThing positive regulation of protein K63-linked deubiquitination Any process that activates or increases the frequency, rate or extent of protein K63-linked deubiquitination. tmpzr1t_l9r_go_relaxed.owl activation of protein K63-linked deubiquitination|up-regulation of protein K63-linked deubiquitination|upregulation of protein K63-linked deubiquitination|up regulation of protein K63-linked deubiquitination bf 2014-05-12T15:40:55Z biological_process owl:Class GO:1903004 biolink:NamedThing regulation of protein K63-linked deubiquitination Any process that modulates the frequency, rate or extent of protein K63-linked deubiquitination. tmpzr1t_l9r_go_relaxed.owl bf 2014-05-12T15:40:43Z biological_process owl:Class GO:0102292 biolink:NamedThing 30-hydroxy-beta-amyrin 11-hydroxylase activity Catalysis of the reaction: 30-hydroxy-beta-amyrin + O2 + NADPH + H+ <=> 11alpha,30-dihydroxy-beta-amyrin + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12683 molecular_function owl:Class GO:0009909 biolink:NamedThing regulation of flower development Any process that modulates the frequency, rate or extent of flower development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033441 biolink:NamedThing AAU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AAU codon. tmpzr1t_l9r_go_relaxed.owl AAT codon-amino acid adaptor activity|asparagine tRNA Note that in the standard genetic code, AAT codes for asparagine. molecular_function owl:Class GO:0038148 biolink:NamedThing chemokine (C-C motif) ligand 2 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL2 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL2 signaling pathway bf 2012-05-11T11:36:08Z biological_process owl:Class GO:0106356 biolink:NamedThing 4-hydroxybenzoate 3-monooxygenase [NADPH] activity Catalysis of the reaction: 4-hydroxybenzoate + H+ + NADPH + O2 = 3,4-dihydroxybenzoate + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl RHEA:19477 hjd 2021-02-02T05:51:57Z molecular_function owl:Class GO:0018671 biolink:NamedThing 4-hydroxybenzoate 3-monooxygenase [NAD(P)H] activity Catalysis of the reaction: 4-hydroxybenzoate + NAD(P)H + H+ + O2 = 3,4-dihydroxybenzoate + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoate 3-hydroxylase activity|4-hydroxybenzoate 3-monooxygenase (reduced nicotinamide adenine dinucleotide (phosphate))|4-hydroxybenzoate-3-hydroxylase activity|4-hydroxybenzoate,NAD(P)H:oxygen oxidoreductase (3-hydroxylating) MetaCyc:1.14.13.33-RXN|EC:1.14.13.33 molecular_function owl:Class GO:1904006 biolink:NamedThing negative regulation of phospholipase D activity Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase D activity. tmpzr1t_l9r_go_relaxed.owl inhibition of choline phosphatase activity|down regulation of lipophosphodiesterase II activity|down-regulation of phosphatidylcholine phosphatidohydrolase activity|inhibition of lecithinase D activity|negative regulation of choline phosphatase activity|down regulation of phosphatidylcholine phosphatidohydrolase activity|downregulation of lipophosphodiesterase II activity|downregulation of phospholipase D activity|down regulation of lecithinase D activity|down-regulation of lecithinase D activity|inhibition of phosphatidylcholine phosphatidohydrolase activity|down-regulation of phospholipase D activity|inhibition of phospholipase D activity|down regulation of choline phosphatase activity|inhibition of lipophosphodiesterase II activity|down regulation of phospholipase D activity|down-regulation of choline phosphatase activity|negative regulation of lecithinase D activity|downregulation of lecithinase D activity|downregulation of choline phosphatase activity|down-regulation of lipophosphodiesterase II activity|negative regulation of phosphatidylcholine phosphatidohydrolase activity|negative regulation of lipophosphodiesterase II activity|downregulation of phosphatidylcholine phosphatidohydrolase activity sl 2015-03-06T17:20:11Z biological_process owl:Class GO:0002180 biolink:NamedThing 5-lipoxygenase complex An nuclear membrane protein complex having arachidonate 5-lipoxygenase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-09T01:05:53Z cellular_component owl:Class GO:0055130 biolink:NamedThing D-alanine catabolic process The chemical reactions and pathways resulting in the breakdown of D-alanine, the D-enantiomer of the amino acid alanine. tmpzr1t_l9r_go_relaxed.owl (2R)-2-aminopropanoic acid catabolic process jid 2009-10-22T02:02:42Z biological_process owl:Class GO:0034041 biolink:NamedThing ABC-type sterol transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sterol(in) = ADP + phosphate + sterol(out). tmpzr1t_l9r_go_relaxed.owl sterol-transporting ATPase activity|ATPase-coupled sterol transmembrane transporter activity|ATP-coupled sterol transmembrane transporter activity|ATP-dependent sterol transmembrane transporter activity molecular_function owl:Class GO:0033579 biolink:NamedThing protein galactosylation in endoplasmic reticulum The addition of a galactose unit to a protein amino acid in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl protein amino acid galactosylation in endoplasmic reticulum|protein amino acid galactosylation in ER biological_process owl:Class GO:0102834 biolink:NamedThing 1-18:1-2-16:0-monogalactosyldiacylglycerol acyl-lipid omega-6 desaturase activity Catalysis of the reaction: 1-18:1-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-16:0-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8294|EC:1.14.19.23 molecular_function owl:Class GO:0071266 biolink:NamedThing 'de novo' L-methionine biosynthetic process The chemical reactions and pathways resulting in the formation of L-methionine, the L-enantiomer of (2S)-2-amino-4-(methylsulfanyl)butanoic acid, from simpler components. tmpzr1t_l9r_go_relaxed.owl 'de novo' L-methionine anabolism|'de novo' L-methionine formation|'de novo' L-methionine biosynthesis|'de novo' L-methionine synthesis mah 2009-12-09T04:34:41Z biological_process owl:Class GO:1903720 biolink:NamedThing negative regulation of I-kappaB phosphorylation Any process that stops, prevents or reduces the frequency, rate or extent of I-kappaB phosphorylation. tmpzr1t_l9r_go_relaxed.owl inhibition of inhibitor of kappaB phosphorylation|down-regulation of I-kappaB phosphorylation|downregulation of inhibitor of kappaB phosphorylation|down regulation of IKB phosphorylation|negative regulation of inhibitor of kappaB phosphorylation|negative regulation of inhibitor of NF-kappaB phosphorylation|down-regulation of IkappaB phosphorylation|downregulation of inhibitor of NF-kappaB phosphorylation|negative regulation of IkappaB phosphorylation|inhibition of I-kappaB phosphorylation|down regulation of inhibitor of NF-kappaB phosphorylation|down regulation of inhibitor of kappaB phosphorylation|downregulation of IkappaB phosphorylation|down regulation of I-kappaB phosphorylation|inhibition of IkappaB phosphorylation|down-regulation of inhibitor of NF-kappaB phosphorylation|down-regulation of IKB phosphorylation|down regulation of IkappaB phosphorylation|down-regulation of inhibitor of kappaB phosphorylation|inhibition of inhibitor of NF-kappaB phosphorylation|downregulation of IKB phosphorylation|downregulation of I-kappaB phosphorylation|negative regulation of IKB phosphorylation|inhibition of IKB phosphorylation lb 2014-12-08T15:45:16Z biological_process owl:Class GO:0150056 biolink:NamedThing amylin receptor complex 1 A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 1. Amylin receptor complex 1 (AMY1) also serves as a receptor for the calcitonin related peptide (CGRP) and adrenomedullin (AM/ADM). tmpzr1t_l9r_go_relaxed.owl AMY1 complex bc 2018-06-21T10:47:10Z cellular_component owl:Class GO:0030296 biolink:NamedThing protein tyrosine kinase activator activity Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035544 biolink:NamedThing negative regulation of SNARE complex assembly Any process that decreases the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-10T01:51:10Z biological_process owl:Class GO:0035542 biolink:NamedThing regulation of SNARE complex assembly Any process that modulates the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-10T01:49:35Z biological_process owl:Class GO:0042034 biolink:NamedThing peptidyl-L-lysine methyl ester biosynthetic process from peptidyl-lysine The modification of a C-terminal peptidyl-lysine to form peptidyl-L-lysine methyl ester. tmpzr1t_l9r_go_relaxed.owl peptidyl-lysine esterification RESID:AA0318 biological_process owl:Class GO:0097716 biolink:NamedThing copper ion transport across blood-brain barrier The directed movement of copper (Cu) ions passing through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl copper ion transport across BBB pr 2016-08-23T14:35:54Z biological_process owl:Class GO:0150104 biolink:NamedThing transport across blood-brain barrier The directed movement of substances (e.g. macromolecules, small molecules, ions) through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl transport across blood brain barrier|transport across BBB bc 2019-05-27T09:12:03Z biological_process owl:Class GO:0031335 biolink:NamedThing regulation of sulfur amino acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids. tmpzr1t_l9r_go_relaxed.owl regulation of sulfur amino acid metabolism biological_process owl:Class GO:1900581 biolink:NamedThing (17Z)-protosta-17(20),24-dien-3beta-ol biosynthetic process The chemical reactions and pathways resulting in the formation of (17Z)-protosta-17(20),24-dien-3beta-ol. tmpzr1t_l9r_go_relaxed.owl (17Z)-protosta-17(20),24-dien-3beta-ol formation|(17Z)-protosta-17(20),24-dien-3beta-ol biosynthesis|(17Z)-protosta-17(20),24-dien-3beta-ol anabolism|(17Z)-protosta-17(20),24-dien-3beta-ol synthesis di 2012-05-15T06:47:38Z biological_process owl:Class GO:0010686 biolink:NamedThing tetracyclic triterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of tetracyclic triterpenoid compounds, terpenoids with six isoprene units and 4 carbon rings. tmpzr1t_l9r_go_relaxed.owl tetracyclic triterpenoid biosynthesis biological_process owl:Class GO:0003095 biolink:NamedThing pressure natriuresis The process in which the volume of blood increases renal pressure and thereby results in both an increase in urine volume (diuresis) and an increase in the amount of sodium excreted in the urine (natriuresis). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043137 biolink:NamedThing DNA replication, removal of RNA primer Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease. tmpzr1t_l9r_go_relaxed.owl Okazaki initiator RNA removal biological_process owl:Class GO:0070596 biolink:NamedThing (1->3)-alpha-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl alpha-1,3 glucan anabolism|alpha-1,3 glucan biosynthesis|1,3-alpha-glucan synthesis|alpha-1,3 glucan synthesis|alpha-1,3 glucan biosynthetic process|1,3-alpha-glucan biosynthesis|1,3-alpha-glucan anabolism|alpha-1,3 glucan formation|1,3-alpha-glucan biosynthetic process|1,3-alpha-glucan formation mah 2009-04-28T03:39:24Z biological_process owl:Class GO:0042926 biolink:NamedThing 3-hydroxyphenylpropionic acid transmembrane transporter activity Enables the directed movement of 3-hydroxyphenylpropionic acid from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenylpropionic acid transporter activity|m-hydroxyphenylpropionic acid transporter activity|3-(3-hydroxyphenyl)propionic acid transporter activity molecular_function owl:Class GO:1901766 biolink:NamedThing phosphinothricin biosynthetic process The chemical reactions and pathways resulting in the formation of phosphinothricin. tmpzr1t_l9r_go_relaxed.owl phosphinothricin formation|phosphinothricin synthesis|phosphinothricin anabolism|phosphinothricin biosynthesis yaf 2013-01-15T10:02:46Z biological_process owl:Class GO:0006053 biolink:NamedThing N-acetylmannosamine catabolic process The chemical reactions and pathways resulting in the breakdown of N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose. tmpzr1t_l9r_go_relaxed.owl N-acetylmannosamine catabolism|N-acetylmannosamine degradation|N-acetylmannosamine breakdown biological_process owl:Class GO:0006051 biolink:NamedThing N-acetylmannosamine metabolic process The chemical reactions and pathways involving N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose. tmpzr1t_l9r_go_relaxed.owl N-acetylmannosamine metabolism biological_process owl:Class GO:0086058 biolink:NamedThing voltage-gated calcium channel activity involved in Purkinje myocyte cell action potential Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an Purkinje myocyte cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-17T12:35:02Z molecular_function owl:Class GO:0035614 biolink:NamedThing snRNA stem-loop binding Binding to a stem-loop in a small nuclear RNA (snRNA). An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. tmpzr1t_l9r_go_relaxed.owl snRNA hairpin loop binding|small nuclear RNA stem-loop binding|snRNA hairpin binding bf 2010-11-26T10:43:17Z molecular_function owl:Class GO:1990046 biolink:NamedThing stress-induced mitochondrial fusion Merging of two or more mitochondria within a cell to form a single compartment, as a result of a disturbance in cellular homeostasis. tmpzr1t_l9r_go_relaxed.owl SIMH|stress-induced mitochondrial hyperfusion|mitochondrial fusion in response to stress pr 2013-02-15T16:01:55Z biological_process owl:Class GO:0048911 biolink:NamedThing efferent axon development in anterior lateral line nerve The process whose specific outcome is the progression of an efferent axon in the anterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048894 biolink:NamedThing efferent axon development in a lateral line nerve The process whose specific outcome is the progression of an efferent axon in a lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in any lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070625 biolink:NamedThing zymogen granule exocytosis The release of intracellular molecules contained within the zymogen granule by fusion of the granule with the plasma membrane of the oocyte, requiring calcium ions. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-01T03:56:02Z biological_process owl:Class GO:0018170 biolink:NamedThing C-terminal peptidyl-polyglutamic acid amidation The formation of a C-terminal peptidyl-polyglutamic acid to form a peptidyl-N-L-glutamyl-poly-L-glutamic acid C-terminus. tmpzr1t_l9r_go_relaxed.owl RESID:AA0261 biological_process owl:Class GO:0018040 biolink:NamedThing C-terminal peptidyl-glutamic acid amidation The formation of a C-terminal peptidyl-glutamic acid amide by hydrolysis and oxidation of an interior Glu-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0087 biological_process owl:Class GO:0035046 biolink:NamedThing pronuclear migration The directed movement of the male and female pronuclei towards each other prior to their fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047654 biolink:NamedThing alliin lyase activity Catalysis of the reaction: an S-alkyl-L-cysteine S-oxide = an alkyl sulfenate + 2-aminoacrylate. tmpzr1t_l9r_go_relaxed.owl L-cysteine sulfoxide lyase activity|cysteine sulfoxide lyase activity|alliin alkyl-sulfenate-lyase activity|cysteine sulphoxide lyase activity|alliinase activity|alkylcysteine sulfoxide lyase activity|S-alkyl-L-cysteine S-oxide alkyl-sulfenate-lyase (2-aminoacrylate-forming)|S-alkylcysteine sulfoxide lyase activity MetaCyc:ALLIIN-LYASE-RXN|RHEA:20141|EC:4.4.1.4 molecular_function owl:Class GO:0004379 biolink:NamedThing glycylpeptide N-tetradecanoyltransferase activity Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide. tmpzr1t_l9r_go_relaxed.owl protein N-myristoyltransferase activity|myristoyl-coenzyme A:protein N-myristoyl transferase activity|peptide N-myristoyltransferase activity|peptide N-tetradecanoyltransferase activity|N-myristoyltransferase activity|tetradecanoyl-CoA:glycylpeptide N-tetradecanoyltransferase activity|myristoylating enzymes|myristoyl-CoA-protein N-myristoyltransferase activity MetaCyc:2.3.1.97-RXN|RHEA:15521|Reactome:R-HSA-184392|Reactome:R-HSA-2534087|EC:2.3.1.97 GO:0019106 molecular_function owl:Class GO:0036139 biolink:NamedThing peptidyl-histidine dioxygenase activity Catalysis of the reaction: peptidyl L-histidine + 2-oxoglutarate + O2 = peptidyl hydroxy-L-histidine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-07T09:26:54Z molecular_function owl:Class GO:1900495 biolink:NamedThing negative regulation of butyryl-CoA biosynthetic process from acetyl-CoA Any process that stops, prevents or reduces the frequency, rate or extent of butyryl-CoA biosynthetic process from acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl down-regulation of butyryl-CoA biosynthetic process from acetyl-CoA|downregulation of butyryl-CoA biosynthesis from acetyl-CoA|inhibition of butyryl-CoA biosynthesis from acetyl-CoA|down-regulation of butyryl-CoA biosynthesis from acetyl-CoA|downregulation of butyryl-CoA biosynthetic process from acetyl-CoA|down regulation of butyryl-CoA biosynthesis from acetyl-CoA|negative regulation of butyryl-CoA biosynthesis from acetyl-CoA|down regulation of butyryl-CoA biosynthetic process from acetyl-CoA|inhibition of butyryl-CoA biosynthetic process from acetyl-CoA tt 2012-05-02T03:51:49Z biological_process owl:Class GO:0102872 biolink:NamedThing 1-16:0-2-18:2-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-palmitoyl-2-linoleoyl-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-16:0-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.25|MetaCyc:RXN-8361 molecular_function owl:Class GO:1990771 biolink:NamedThing clathrin-dependent extracellular exosome endocytosis The clathrin-mediated endocytosis of an extracellular exosome. tmpzr1t_l9r_go_relaxed.owl clathrin-mediated extracellular exosome endocytosis|exosome related sl 2015-06-15T17:03:57Z biological_process owl:Class GO:1903087 biolink:NamedThing mitotic spindle pole body duplication Any spindle pole body duplication that is involved in the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl spindle pole body biogenesis involved in mitotic cell cycle|spindle pole body assembly involved in mitotic cell cycle|spindle pole body replication involved in mitotic cell cycle|spindle pole body duplication involved in mitotic cell cycle|spindle pole body biosynthesis involved in mitotic cell cycle|spindle pole body duplication in cytoplasm involved in mitotic cell cycle|spindle pole body duplication associated with nuclear envelope involved in mitotic cell cycle|spindle pole body formation involved in mitotic cell cycle jl 2014-06-02T16:45:56Z biological_process owl:Class GO:0019097 biolink:NamedThing pole plasm mitochondrial srRNA localization Any process in which mitochondrial small ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl pole plasm mitochondrial srRNA localisation|establishment and maintenance of mitochondrial localization in pole plasm|oocyte pole plasm mitochondrial srRNA localization GO:0048119 biological_process owl:Class GO:0033571 biolink:NamedThing lactoferrin transport The directed movement of lactoferrin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090671 biolink:NamedThing telomerase RNA localization to Cajal body A process in which telomerase RNA (TERC) is transported to, or maintained in, a Cajal body. tmpzr1t_l9r_go_relaxed.owl tb 2015-12-17T14:06:21Z biological_process owl:Class GO:0090670 biolink:NamedThing RNA localization to Cajal body A process in which an RNA is transported to, or maintained in, a Cajal body. tmpzr1t_l9r_go_relaxed.owl tb 2015-12-17T14:04:40Z biological_process owl:Class GO:0034969 biolink:NamedThing histone arginine methylation The modification of a histone by addition of a methyl group to an arginine residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016571 biolink:NamedThing histone methylation The modification of histones by addition of methyl groups. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Histone_methylation biological_process owl:Class GO:0048543 biolink:NamedThing phytochrome chromophore biosynthetic process The chemical reactions and pathways resulting in the formation of the phytochrome chromophore. The phytochrome chromophore is a linear tetrapyrrolic prosthetic group covalently attached to the large soluble protein phytochrome. Light absorption by the phytochrome chromophore triggers photoconversion between two spectrally distinct forms of the photoreceptor: Pr, the red light absorbing form, and Pfr, the far red light absorbing form. tmpzr1t_l9r_go_relaxed.owl phytochrome chromophore anabolism|phytochrome chromophore formation|phytochrome chromophore synthesis|phytochrome chromophore biosynthesis biological_process owl:Class GO:1901005 biolink:NamedThing ubiquinone-6 catabolic process The chemical reactions and pathways resulting in the breakdown of ubiquinone-6. tmpzr1t_l9r_go_relaxed.owl ubiquinone-6 breakdown|ubiquinone-6 catabolism|ubiquinone-6 degradation bf 2012-06-15T09:59:51Z biological_process owl:Class GO:0032322 biolink:NamedThing ubiquinone catabolic process The chemical reactions and pathways resulting in the breakdown of ubiquinone, a lipid-soluble electron-transporting coenzyme. tmpzr1t_l9r_go_relaxed.owl ubiquinone breakdown|ubiquinone catabolism|ubiquinone degradation biological_process owl:Class GO:0042815 biolink:NamedThing bipolar cell growth The process in which a cell irreversibly increases in size along one axis through simultaneous polarized growth from opposite ends of a cell, resulting in morphogenesis of the cell. tmpzr1t_l9r_go_relaxed.owl polar cell elongation|bipolar cell elongation|bipolar growth Bipolar cell growth refers to a change in both cell size and cell shape. For shape changes where cell size is not affected, consider instead the term 'establishment or maintenance of bipolar cell polarity resulting in cell shape ; GO:0061246' and its children. biological_process owl:Class GO:0072432 biolink:NamedThing response to G1 DNA damage checkpoint signaling A process that occurs in response to signals generated as a result of G1/S transition DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle G1/S transition DNA damage checkpoint effector process|response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling mah 2010-12-08T04:38:04Z biological_process owl:Class GO:0009297 biolink:NamedThing pilus assembly The assembly from its constituent parts of a pilus, a short filamentous structure of bacterial cell, flagella-like in structure and generally present in many copies. Pili are variously involved in transfer of nucleic acids, adherence to surfaces, and formation of pellicles. Is required for bacterial conjugation, or can play a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles. tmpzr1t_l9r_go_relaxed.owl fimbriae assembly|fimbrium assembly|pilus biogenesis|fimbrium biogenesis|fimbrial assembly|pilus formation|fimbria assembly|fimbria biogenesis|fimbriae biogenesis https://github.com/geneontology/go-ontology/issues/14579 biological_process owl:Class GO:0043711 biolink:NamedThing pilus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies. tmpzr1t_l9r_go_relaxed.owl pilus organisation|pilus organization and biogenesis Note that this term should not be used for direct annotation. Please use one of the children, GO:0009297 ; pilus assembly or GO:0043108 ; pilus retraction. biological_process owl:Class GO:0050782 biolink:NamedThing galactose uniporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: galactose (out) = galactose(in). tmpzr1t_l9r_go_relaxed.owl galactose, glucose uniporter activity molecular_function owl:Class GO:0099601 biolink:NamedThing regulation of neurotransmitter receptor activity Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000497 biolink:NamedThing positive regulation of cell proliferation involved in compound eye morphogenesis Any process that activates or increases the frequency, rate or extent of cell proliferation involved in compound eye morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-18T02:19:54Z biological_process owl:Class GO:0071423 biolink:NamedThing malate transmembrane transport A process in which a malate ion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane malate transport|malate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-12-15T03:31:37Z biological_process owl:Class GO:0008235 biolink:NamedThing metalloexopeptidase activity Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901355 biolink:NamedThing response to rapamycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rapamycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-13T13:12:26Z biological_process owl:Class GO:2001278 biolink:NamedThing positive regulation of leucine biosynthetic process Any process that activates or increases the frequency, rate or extent of leucine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of leucine formation|positive regulation of leucine synthesis|positive regulation of leucine anabolism|positive regulation of leucine biosynthesis mcc 2011-12-13T03:13:42Z biological_process owl:Class GO:1900685 biolink:NamedThing positive regulation of fumonisin biosynthetic process Any process that activates or increases the frequency, rate or extent of fumonisin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of fumonisin synthesis|positive regulation of fumonisin formation|positive regulation of fumonisin biosynthesis|up regulation of fumonisin anabolism|activation of fumonisin anabolism|up-regulation of fumonisin synthesis|up-regulation of fumonisin formation|up regulation of fumonisin biosynthetic process|upregulation of fumonisin formation|up-regulation of fumonisin biosynthetic process|up regulation of fumonisin synthesis|up regulation of fumonisin formation|positive regulation of fumonisin synthesis|up regulation of fumonisin biosynthesis|upregulation of fumonisin biosynthetic process|up-regulation of fumonisin biosynthesis|positive regulation of fumonisin anabolism|activation of fumonisin biosynthesis|upregulation of fumonisin anabolism|activation of fumonisin biosynthetic process|activation of fumonisin formation|up-regulation of fumonisin anabolism|activation of fumonisin synthesis|upregulation of fumonisin biosynthesis di 2012-05-22T04:30:06Z biological_process owl:Class GO:0050857 biolink:NamedThing positive regulation of antigen receptor-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell. tmpzr1t_l9r_go_relaxed.owl activation of antigen receptor-mediated signaling pathway|up regulation of antigen receptor-mediated signaling pathway|positive regulation of antigen receptor mediated signalling pathway|stimulation of antigen receptor-mediated signaling pathway|upregulation of antigen receptor-mediated signaling pathway|up-regulation of antigen receptor-mediated signaling pathway biological_process owl:Class GO:0008117 biolink:NamedThing sphinganine-1-phosphate aldolase activity Catalysis of the reaction: sphinganine 1-phosphate = phosphoethanolamine + palmitaldehyde. tmpzr1t_l9r_go_relaxed.owl sphinganine-1-phosphate palmitaldehyde-lyase (phosphoethanolamine-forming)|sphingosine-1-phosphate lyase activity|sphingosine-1-phosphate aldolase activity|sphinganine-1-phosphate lyase activity|dihydrosphingosine 1-phosphate aldolase activity|sphinganine-1-phosphate alkanal-lyase activity|sphinganine-1-phosphate palmitaldehyde-lyase activity Reactome:R-HSA-428676|EC:4.1.2.27|RHEA:18593|Reactome:R-HSA-428681|MetaCyc:SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN GO:0016001 molecular_function owl:Class GO:1905512 biolink:NamedThing regulation of short-term synaptic potentiation Any process that modulates the frequency, rate or extent of short-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic facilitation hjd 2016-09-28T17:40:15Z biological_process owl:Class GO:0031077 biolink:NamedThing post-embryonic camera-type eye development The process occurring during the post-embryonic phase whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl post-embryonic camera-style eye development biological_process owl:Class GO:0002090 biolink:NamedThing regulation of receptor internalization Any process that modulates the frequency, rate or extent of receptor internalization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075257 biolink:NamedThing positive regulation of teliospore formation Any process that activates, maintains or increases the frequency, rate or extent of teliospore formation, which is the formation of a thick-walled resting or overwintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150165 biolink:NamedThing miRNA-mediated inhibition of transcription by RNA polymerase II Any process mediated by a microRNA (miRNA) that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:21:12Z biological_process owl:Class GO:0090529 biolink:NamedThing cell septum assembly The assembly and arrangement of a cellular component that is composed of peptidoglycan and often chitin in addition to other materials and usually forms perpendicular to the long axis of a cell or hypha. It grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cell septum assembly involved in cell cycle cytokinesis tb 2013-02-06T10:26:38Z GO:0090530 biological_process owl:Class GO:0033115 biolink:NamedThing cyanelle thylakoid membrane The lipid bilayer membrane of any thylakoid within a cyanelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015723 biolink:NamedThing bilirubin transport The directed movement of bilirubin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048799 biolink:NamedThing animal organ maturation A developmental process, independent of morphogenetic (shape) change, that is required for an animal organ to attain its fully functional state. An organ is a tissue or set of tissues that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009583 biolink:NamedThing detection of light stimulus The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of light|detection of light biological_process owl:Class GO:0051935 biolink:NamedThing glutamate reuptake The uptake of L-glutamate by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl glutamate import into glial cell|L-glutamate uptake involved in synaptic transmission|L-glutamate uptake during transmission of nerve impulse|glutamate uptake during transmission of nerve impulse|L-glutamate reuptake|glutamate recycling|glutamate import into neuron biological_process owl:Class GO:1905262 biolink:NamedThing negative regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination Any process that stops, prevents or reduces the frequency, rate or extent of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination. tmpzr1t_l9r_go_relaxed.owl down regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|down-regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|inhibition of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination|downregulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination se 2016-06-13T20:45:10Z biological_process owl:Class GO:0120012 biolink:NamedThing intermembrane sphingolipid transfer The transport of sphingolipids between membranes in which a sphingolipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-16T22:20:45Z biological_process owl:Class GO:1990466 biolink:NamedThing protein autosumoylation The sumoylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. tmpzr1t_l9r_go_relaxed.owl protein self-sumoylation|protein auto-sumoylation se 2014-08-25T22:37:21Z biological_process owl:Class GO:0016925 biolink:NamedThing protein sumoylation The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein. tmpzr1t_l9r_go_relaxed.owl SUMO-protein conjugation|protein sumolation|sumoylation|Smt3-protein conjugation|small ubiquitin-related protein 1 conjugation|Smt3p-protein conjugation Wikipedia:SUMO_protein GO:0019951|GO:0016927|GO:0006485|GO:0019947 biological_process owl:Class GO:0090493 biolink:NamedThing catecholamine uptake The directed movement of catecholamine into a cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-17T11:06:17Z biological_process owl:Class GO:0051544 biolink:NamedThing positive regulation of elastin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin. tmpzr1t_l9r_go_relaxed.owl up-regulation of elastin biosynthetic process|upregulation of elastin biosynthetic process|up regulation of elastin biosynthetic process|activation of elastin biosynthetic process|stimulation of elastin biosynthetic process biological_process owl:Class GO:0051647 biolink:NamedThing nucleus localization Any process in which the nucleus is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl localization of nucleus|establishment and maintenance of nucleus localization|nucleus localisation|cell nucleus localization biological_process owl:Class GO:0090274 biolink:NamedThing positive regulation of somatostatin secretion Any process that increases the rate, frequency, extent of the regulated release of somatostatin from secretory granules in the D cells of the pancreas. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:54:14Z biological_process owl:Class GO:1902523 biolink:NamedThing positive regulation of protein K63-linked ubiquitination Any process that activates or increases the frequency, rate or extent of protein K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl up regulation of protein K63-linked polyubiquitination|activation of protein K63-linked ubiquitination|activation of protein K63-linked polyubiquitination|upregulation of protein K63-linked polyubiquitination|up regulation of protein K63-linked ubiquitination|positive regulation of protein K63-linked polyubiquitination|up-regulation of protein K63-linked polyubiquitination|up-regulation of protein K63-linked ubiquitination|upregulation of protein K63-linked ubiquitination An example is BIRC2 (UniProt ID Q13490) in PMID:21931591. ppm 2013-12-02T09:52:05Z biological_process owl:Class GO:1990021 biolink:NamedThing Schaffer axon collateral Part of axon of a CA3 pyramidal neuron that projects to hippocampal area CA1. tmpzr1t_l9r_go_relaxed.owl Schaffer collateral NIF_Subcellular:nlx_subcell_20090511 pr 2013-01-10T16:06:17Z cellular_component owl:Class GO:0001155 biolink:NamedThing TFIIIA-class transcription factor binding Binding to an RNA polymerase III transcription factor of the TFIIIA class, one of the factors involved in formation of the preinitiation complex (PIC) at RNA polymerase III promoters. tmpzr1t_l9r_go_relaxed.owl krc 2011-01-27T04:57:49Z molecular_function owl:Class GO:0001025 biolink:NamedThing RNA polymerase III general transcription initiation factor binding Binding to an RNA polymerase III transcription factor, a protein required to initiate or regulate transcription by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription factor binding krc 2010-08-20T03:26:50Z molecular_function owl:Class GO:0014807 biolink:NamedThing regulation of somitogenesis Any process that modulates the frequency, rate or extent of somitogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045579 biolink:NamedThing positive regulation of B cell differentiation Any process that activates or increases the frequency, rate or extent of B cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of B cell differentiation|positive regulation of B lymphocyte differentiation|positive regulation of B-cell differentiation|activation of B cell differentiation|positive regulation of B cell development|positive regulation of B-lymphocyte differentiation|up-regulation of B cell differentiation|stimulation of B cell differentiation|upregulation of B cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905830 biolink:NamedThing positive regulation of prostaglandin catabolic process Any process that activates or increases the frequency, rate or extent of prostaglandin catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of prostaglandin breakdown|activation of prostaglandin catabolic process|up-regulation of prostaglandin catabolism|upregulation of prostaglandin degradation|up-regulation of prostaglandin degradation|activation of prostaglandin breakdown|upregulation of prostaglandin catabolic process|upregulation of prostaglandin catabolism|positive regulation of prostaglandin catabolism|up regulation of prostaglandin breakdown|up regulation of prostaglandin catabolic process|upregulation of prostaglandin breakdown|up-regulation of prostaglandin catabolic process|activation of prostaglandin catabolism|activation of prostaglandin degradation|positive regulation of prostaglandin breakdown|up regulation of prostaglandin catabolism|up regulation of prostaglandin degradation|positive regulation of prostaglandin degradation sl 2017-01-16T21:36:56Z biological_process owl:Class GO:0031448 biolink:NamedThing positive regulation of fast-twitch skeletal muscle fiber contraction Any process that activates or increases the frequency, rate or extent of fast-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of fast-twitch skeletal muscle contraction|stimulation of fast-twitch skeletal muscle contraction|up regulation of fast-twitch skeletal muscle contraction|positive regulation of fast-twitch skeletal muscle contraction|activation of fast-twitch skeletal muscle contraction|upregulation of fast-twitch skeletal muscle contraction biological_process owl:Class GO:2001238 biolink:NamedThing positive regulation of extrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of extrinsic apoptotic signalling pathway|positive regulation of extrinsic apoptosis pr 2011-11-24T01:30:16Z biological_process owl:Class GO:0120056 biolink:NamedThing large intestinal transit Migration of ingested material along the length of the large intestine. tmpzr1t_l9r_go_relaxed.owl large intestine transit|colon transit|large bowel transit|colonic transit krc 2017-06-13T20:52:01Z biological_process owl:Class GO:0120054 biolink:NamedThing intestinal motility Contractions of the intestinal tract that include peristalsis (moving contents onward) and non-peristaltic movement (moving contents back and forth). tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T20:42:24Z biological_process owl:Class GO:0040016 biolink:NamedThing embryonic cleavage The first few specialized divisions of an activated animal egg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047047 biolink:NamedThing oxaloglycolate reductase (decarboxylating) activity Catalysis of the reaction: glycerate + CO2 + NAD(P)+ = NAD(P)H + H+ + 2-hydroxy-3-oxosuccinate. tmpzr1t_l9r_go_relaxed.owl D-glycerate:NAD(P)+ oxidoreductase (carboxylating) MetaCyc:1.1.1.92-RXN|EC:1.1.1.92 molecular_function owl:Class GO:0034610 biolink:NamedThing oligodeoxyribonucleotidase activity Catalysis of the exonucleolytic cleavage of oligodeoxyribonucleotides to yield deoxyribonucleoside 5'-phosphates. tmpzr1t_l9r_go_relaxed.owl DNA oligonucleotidase activity molecular_function owl:Class GO:0140502 biolink:NamedThing effector-mediated suppression of host salicylic acid-mediated innate immune signalling A process mediated by a molecule secreted by a symbiont that results in the suppression of host salicylic acid-mediated innate immune signalling. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19848 pg 2020-08-11T06:16:36Z biological_process owl:Class GO:0052003 biolink:NamedThing suppression by symbiont of defense-related host salicylic acid-mediated signal transduction pathway Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of host salicylic acid-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host salicylic acid-mediated defense response|inhibition by symbiont of host salicylic acid-mediated defense response|negative modulation by organism of defense-related host salicylic acid-mediated signal transduction pathway|suppression of host SA mediated defense response|downregulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|down-regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|down regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|downregulation by symbiont of host salicylic acid-mediated defense response|down-regulation by symbiont of host salicylic acid-mediated defense response|negative regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|negative modulation by organism of defense-related host SA-mediated signal transduction pathway|inhibition by symbiont of defense-related host salicylic acid-mediated signal transduction pathway|negative regulation by organism of defense-related salicylic acid-mediated signal transduction pathway of other organism involved in symbiotic interaction|negative regulation by organism of defense-related host SA-mediated signal transduction pathway|negative regulation of host SA-mediated defense response|negative regulation by symbiont of host salicylic acid-mediated defense response|negative regulation by organism of salicylic acid-mediated defense response of other organism involved in symbiotic interaction|suppression by organism of host salicylic acid-mediated defense response GO:0052004|GO:0052252|GO:0052253 biological_process owl:Class GO:1901443 biolink:NamedThing negative regulation of response to furfural Any process that stops, prevents or reduces the frequency, rate or extent of response to furfural. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to furfural|inhibition of response to furfural|down regulation of response to furfural|downregulation of response to furfural tt 2012-10-02T14:10:34Z biological_process owl:Class GO:1904049 biolink:NamedThing negative regulation of spontaneous neurotransmitter secretion Any process that stops, prevents or reduces the frequency, rate or extent of spontaneous neurotransmitter secretion. tmpzr1t_l9r_go_relaxed.owl inhibition of stimulus-independent neurotransmitter secretion|down-regulation of spontaneous neurotransmitter secretion|down regulation of stimulus-independent neurotransmitter secretion|downregulation of spontaneous neurotransmitter secretion|down regulation of spontaneous neurotransmitter secretion|inhibition of spontaneous neurotransmitter secretion|down-regulation of stimulus-independent neurotransmitter secretion|negative regulation of stimulus-independent neurotransmitter secretion|downregulation of stimulus-independent neurotransmitter secretion An example of this is PARK2 / parkin in human (O60260) in PMID:22314364 (inferred from mutant phenotype). pad 2015-03-17T10:37:17Z biological_process owl:Class GO:0140572 biolink:NamedThing vacuole fission The division of a vacuole within a cell to form two or more separate vacuoles. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20639 pg 2021-01-04T10:17:58Z biological_process owl:Class GO:0048285 biolink:NamedThing organelle fission The creation of two or more organelles by division of one organelle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071525 biolink:NamedThing pyrrolysine metabolic process The chemical reactions and pathways involving pyrrolysine, N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine. tmpzr1t_l9r_go_relaxed.owl pyrrolysine metabolism|monomethylamine methyltransferase cofactor lysine adduct metabolic process mah 2010-01-07T02:44:49Z biological_process owl:Class GO:0097141 biolink:NamedThing BIM-BCL-2 complex A heterodimeric protein complex consisting of BIM and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:42:31Z cellular_component owl:Class GO:0006114 biolink:NamedThing glycerol biosynthetic process The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. tmpzr1t_l9r_go_relaxed.owl glycerol formation|glycerol biosynthesis|glycerol synthesis|glycerol anabolism biological_process owl:Class GO:0042403 biolink:NamedThing thyroid hormone metabolic process The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine. tmpzr1t_l9r_go_relaxed.owl thyroid hormone metabolism biological_process owl:Class GO:1901911 biolink:NamedThing adenosine 5'-(hexahydrogen pentaphosphate) catabolic process The chemical reactions and pathways resulting in the breakdown of adenosine 5'-(hexahydrogen pentaphosphate). tmpzr1t_l9r_go_relaxed.owl adenosine 5'-(hexahydrogen pentaphosphate) breakdown|adenosine 5'-(hexahydrogen pentaphosphate) catabolism|adenosine 5'-(hexahydrogen pentaphosphate) degradation al 2013-02-13T14:18:03Z biological_process owl:Class GO:0008979 biolink:NamedThing prophage integrase activity Catalysis of the integration of prophage DNA into a target DNA molecule, usually a bacterial chromosome, via a sequence-specific recombination event which involves the formation of an intasome, a DNA-protein-complex designed for site-specific recombination of the phage and host DNA. tmpzr1t_l9r_go_relaxed.owl integrase activity involved in establishment of integrated proviral latency molecular_function owl:Class GO:0001841 biolink:NamedThing neural tube formation The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system. tmpzr1t_l9r_go_relaxed.owl neurulation|neural tube morphogenesis Wikipedia:Neurulation GO:0001679 biological_process owl:Class GO:0001838 biolink:NamedThing embryonic epithelial tube formation The morphogenesis of an embryonic epithelium into a tube-shaped structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035785 biolink:NamedThing cellular nickel ion homeostasis Any process involved in the maintenance of an internal steady state of nickel ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular nickel homeostasis bf 2011-04-05T09:55:56Z biological_process owl:Class GO:0072503 biolink:NamedThing cellular divalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of divalent cations at the level of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'cellular di-, tri-valent inorganic cation homeostasis ; GO:0030005' (sibling term 'cellular trivalent inorganic cation homeostasis' ; GO:0072504'). mah 2010-12-16T01:25:40Z biological_process owl:Class GO:0036527 biolink:NamedThing peptidyl-arginine deglycation The removal of a sugar or dicarbonyl from an arginine residue of a glycated protein. tmpzr1t_l9r_go_relaxed.owl deglycation of N-acetylarginine bf 2016-08-04T10:36:30Z biological_process owl:Class GO:0035627 biolink:NamedThing ceramide transport The directed movement of ceramides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ceramides are a class of lipid composed of sphingosine linked to a fatty acid. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-10T10:02:16Z biological_process owl:Class GO:0046449 biolink:NamedThing creatinine metabolic process The chemical reactions and pathways involving creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine. tmpzr1t_l9r_go_relaxed.owl creatinine metabolism biological_process owl:Class GO:0047660 biolink:NamedThing amidinoaspartase activity Catalysis of the reaction: N-amidino-L-aspartate + H(2)O = L-aspartate + urea. tmpzr1t_l9r_go_relaxed.owl N-amidino-L-aspartate amidinohydrolase activity|amidinoaspartic amidinohydrolase activity EC:3.5.3.14|MetaCyc:AMIDINOASPARTASE-RXN|KEGG_REACTION:R00777|RHEA:14849 molecular_function owl:Class GO:1900350 biolink:NamedThing positive regulation of methane biosynthetic process from methylamine Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from methylamine. tmpzr1t_l9r_go_relaxed.owl up-regulation of methane biosynthetic process from methylamine|upregulation of methane biosynthetic process from methylamine|activation of methane biosynthetic process from methylamine|up regulation of methane biosynthetic process from methylamine tt 2012-04-06T02:12:12Z biological_process owl:Class GO:0032400 biolink:NamedThing melanosome localization Any process in which a melanosome is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl melanosome localisation biological_process owl:Class GO:0099002 biolink:NamedThing viral genome ejection through host cell envelope, short tail mechanism Ejection by a non-enveloped prokaryotic virus of its genome into the host cytoplasm via a short tail ejection system consisting a central tube, the connector which attaches the tail to the phage capsid and releases inner core proteins. Upon binding to the host cell surface, the phage displays a tube-like extension of its short tail that penetrates both host membranes. This tail extension comes from the release of viral core proteins with channel forming properties. tmpzr1t_l9r_go_relaxed.owl viral short tail ejection system VZ:3954 biological_process owl:Class GO:0039678 biolink:NamedThing viral genome ejection through host cell envelope Ejection by a non-enveloped prokaryotic virus of its genome into the host cytoplasm. Caudovirales carry an ejection apparatus that can be long and contractile, long and noncontractile, or short, and is able to penetrate the host cell envelope to deliver the viral genome into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl phage genome ejection|viral genome injection through bacterial membranes When a pore-forming protein is involved, see also 'pore-mediated entry of viral genome into host cell ; GO:0044694'. bf 2013-09-26T11:56:48Z biological_process owl:Class GO:0033850 biolink:NamedThing Z-farnesyl diphosphate synthase activity Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = 2-cis,6-trans-farnesyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl (Z)-farnesyl diphosphate synthase activity|geranyl-diphosphate:isopentenyl-diphosphate geranylcistransferase activity MetaCyc:2.5.1.68-RXN|RHEA:23300|EC:2.5.1.68|KEGG_REACTION:R08528 molecular_function owl:Class GO:1901884 biolink:NamedThing 4-hydroxycoumarin biosynthetic process The chemical reactions and pathways resulting in the formation of 4-hydroxycoumarin. tmpzr1t_l9r_go_relaxed.owl 4-hydroxycoumarin anabolism|4-hydroxycoumarin formation|4-hydroxycoumarin synthesis|4-hydroxycoumarin biosynthesis ms 2013-02-06T14:05:59Z biological_process owl:Class GO:1901882 biolink:NamedThing 4-hydroxycoumarin metabolic process The chemical reactions and pathways involving 4-hydroxycoumarin. tmpzr1t_l9r_go_relaxed.owl 4-hydroxycoumarin metabolism ms 2013-02-06T14:05:50Z biological_process owl:Class GO:0050581 biolink:NamedThing D-mannitol oxidase activity Catalysis of the reaction: mannitol + O2 = mannose + H2O2. tmpzr1t_l9r_go_relaxed.owl mannitol oxidase activity|D-arabitol oxidase activity|mannitol:oxygen oxidoreductase (cyclizing)|D-arabinitol oxidase activity EC:1.1.3.40|RHEA:18513|MetaCyc:1.1.3.40-RXN molecular_function owl:Class GO:0021911 biolink:NamedThing retinoic acid metabolic process in spinal cord anterior-posterior patterning The chemical reactions and pathways involving the synthesis and degradation of retionic acid that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl retinoic acid metabolism in spinal cord anterior-posterior patterning biological_process owl:Class GO:0098705 biolink:NamedThing copper ion import across plasma membrane The directed movement of copper ions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl copper cation import into cell|high affinity copper transport|high affinity copper ion transport|copper ion import into cell|high-affinity copper ion transport mah 2014-04-03T13:26:04Z GO:0015678|GO:1902861 biological_process owl:Class GO:0015679 biolink:NamedThing plasma membrane copper ion transport The directed movement of copper ions across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane copper transport biological_process owl:Class GO:1904045 biolink:NamedThing cellular response to aldosterone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldosterone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-16T23:07:59Z biological_process owl:Class GO:0009938 biolink:NamedThing negative regulation of gibberellic acid mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of gibberellic acid mediated signalling|down-regulation of gibberellic acid mediated signaling|inhibition of gibberellic acid mediated signaling|downregulation of gibberellic acid mediated signaling|down regulation of gibberellic acid mediated signaling biological_process owl:Class GO:0005019 biolink:NamedThing platelet-derived growth factor beta-receptor activity Combining with platelet-derived growth factor isoform PDGF-BB or PDGF-AB to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl betaPDGF receptor activity|PDGF beta-receptor activity molecular_function owl:Class GO:0005017 biolink:NamedThing platelet-derived growth factor-activated receptor activity Combining with platelet-derived growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PDGF-activated receptor activity|PDGF receptor activity|PDGFR activity|platelet-derived growth factor receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand PDGF. For receptors that bind other growth factors, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:2001004 biolink:NamedThing negative regulation of pectin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of pectin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of pectin catabolism|negative regulation of pectin degradation|negative regulation of pectin breakdown tt 2011-08-08T03:24:06Z biological_process owl:Class GO:0008657 biolink:NamedThing DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity Binds to and stops, prevents or reduces the activity of ATP-hydrolyzing DNA topoisomerase. ATP-hydrolyzing DNA topoisomerase catalyzes the DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. tmpzr1t_l9r_go_relaxed.owl DNA gyrase inhibitor activity molecular_function owl:Class GO:0072586 biolink:NamedThing DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) regulator activity Binds to and modulates the activity of ATP-hydrolyzing DNA topoisomerase. DNA topoisomerase (ATP-hydrolyzing) regulator activity catalyzes a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-09T05:31:50Z molecular_function owl:Class GO:0050757 biolink:NamedThing thymidylate synthase biosynthetic process The chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase, which catalyzes the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP. tmpzr1t_l9r_go_relaxed.owl thymidylate synthase anabolism|thymidylate synthase formation|thymidylate synthase synthesis|thymidylate synthase biosynthesis biological_process owl:Class GO:0006218 biolink:NamedThing uridine catabolic process The chemical reactions and pathways resulting in the breakdown of uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids. tmpzr1t_l9r_go_relaxed.owl uridine catabolism|uridine degradation|uridine breakdown biological_process owl:Class GO:0050963 biolink:NamedThing detection of electrical stimulus involved in sensory perception The series of events in which an electrical stimulus is received by a cell and converted into a molecular signal as part of sensory perception. tmpzr1t_l9r_go_relaxed.owl sensory detection of electrical stimulus during sensory perception|sensory perception, sensory transduction of electrical stimulus|sensory detection of electrical stimulus|sensory transduction of electrical stimulus during sensory perception|sensory perception, sensory detection of electrical stimulus|sensory transduction of electrical stimulus biological_process owl:Class GO:0006279 biolink:NamedThing premeiotic DNA replication The replication of DNA that precedes meiotic cell division. tmpzr1t_l9r_go_relaxed.owl DNA replication involved in S-phase involved in meiotic cell cycle|meiotic nuclear cell cycle DNA replication|premeiotic DNA synthesis|DNA replication involved in S phase involved in meiotic cell cycle|meiotic DNA replication|DNA replication during S phase involved in meiotic cell cycle|meiotic cell cycle DNA replication|meiotic DNA synthesis|nuclear cell cycle DNA replication involved in meiotic cell cycle GO:1902968 biological_process owl:Class GO:0042925 biolink:NamedThing benzoate transmembrane transporter activity Enables the directed movement of benzoate, the anion of benzoic acid (benzenecarboxylic acid) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl benzoate transporter activity RHEA:32811 molecular_function owl:Class GO:0060612 biolink:NamedThing adipose tissue development The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat. tmpzr1t_l9r_go_relaxed.owl adipogenesis dph 2009-05-15T12:36:28Z biological_process owl:Class GO:0045672 biolink:NamedThing positive regulation of osteoclast differentiation Any process that activates or increases the frequency, rate or extent of osteoclast differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of osteoclast differentiation|stimulation of osteoclast differentiation|activation of osteoclast differentiation|up regulation of osteoclast differentiation|up-regulation of osteoclast differentiation biological_process owl:Class GO:0009604 biolink:NamedThing detection of symbiotic bacterium The series of events in which a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism, is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of symbiotic bacterium|detection of symbiotic bacteria|perception of symbiotic bacteria biological_process owl:Class GO:0015653 biolink:NamedThing glycine betaine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycine betaine(out) + H+(out) = glycine betaine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl glycine betaine:hydrogen symporter activity molecular_function owl:Class GO:0015199 biolink:NamedThing amino-acid betaine transmembrane transporter activity Enables the transfer of betaine from one side of a membrane to the other. Betaine is the N-trimethyl derivative of an amino acid. tmpzr1t_l9r_go_relaxed.owl glycine betaine/proline porter activity|proline/glycine/betaine:hydrogen/sodium symporter activity|betaine/GABA:sodium symporter activity|betaine transmembrane transporter activity molecular_function owl:Class GO:1903481 biolink:NamedThing negative regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly Any process that stops, prevents or reduces the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|down-regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly|down regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|inhibition of actin filament organisation involved in mitotic actomyosin contractile ring assembly|downregulation of actin filament organization involved in mitotic actomyosin contractile ring assembly|down regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|down-regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|negative regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|inhibition of actin filament organization involved in mitotic actomyosin contractile ring assembly|downregulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|negative regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|inhibition of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis|down-regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly|down regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly vw 2014-09-23T16:03:50Z biological_process owl:Class GO:1902543 biolink:NamedThing negative regulation of protein localization to mitotic spindle pole body Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein localisation in mitotic spindle pole body|downregulation of protein localisation to mitotic spindle pole body|downregulation of protein localization to mitotic spindle pole body|down-regulation of protein localisation to mitotic spindle pole body|inhibition of protein localisation to mitotic spindle pole body|down-regulation of protein localization to mitotic spindle pole body|down regulation of protein localisation to mitotic spindle pole body|inhibition of protein localization to mitotic spindle pole body|negative regulation of protein localisation to mitotic spindle pole body|down regulation of protein localization to mitotic spindle pole body al 2013-12-04T13:47:18Z biological_process owl:Class GO:1902542 biolink:NamedThing regulation of protein localization to mitotic spindle pole body Any process that modulates the frequency, rate or extent of protein localization to mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to mitotic spindle pole body al 2013-12-04T13:47:09Z biological_process owl:Class GO:0080050 biolink:NamedThing regulation of seed development Any process that modulates the frequency, rate or extent of seed development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098995 biolink:NamedThing disruption by virus of host envelope lipopolysaccharide during virus entry The breakdown of lipopolysaccharides in a host cell envelope during virus entry into a host cell. For example a phage entering a gram-negative bacterium may actively break down outer membrane lipopolysaccharides. tmpzr1t_l9r_go_relaxed.owl degradation of host cell envelope lipopolysaccharide during viral entry|disassembly by virus of outer membrane lipopolysaccharide during viral entry|degradation of host lipopolysaccharide during virus entry VZ:3939 biological_process owl:Class GO:0052009 biolink:NamedThing disruption by symbiont of host cell wall A process carried out by a symbiont that breaks down the cell wall of its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl disassembly by symbiont of host cell wall biological_process owl:Class GO:0031128 biolink:NamedThing developmental induction A developmental process involving two tissues in which one tissue (the inducer) produces a signal that directs cell fate commitment of cells in the second tissue (the responder). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043337 biolink:NamedThing CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase activity Catalysis of the reaction: CDP-diacylglycerol + phosphatidylglycerol = CMP + diphosphatidylglycerol. tmpzr1t_l9r_go_relaxed.owl cardiolipin synthetase|cardiolipin synthase MetaCyc:RXN-8141|Reactome:R-HSA-1483063|RHEA:32931 molecular_function owl:Class GO:0036424 biolink:NamedThing L-phosphoserine phosphatase activity Catalysis of the reaction: O-phospho-L-serine + H2O = L-serine + phosphate, on a free amino acid. tmpzr1t_l9r_go_relaxed.owl O-phosphoserine phosphohydrolase activity|phosphoserine phosphatase activity https://github.com/geneontology/go-ontology/issues/21638|https://github.com/geneontology/go-ontology/issues/20587 Reactome:R-HSA-977324|RHEA:21208|MetaCyc:RXN0-5114|KEGG_REACTION:R00582|EC:3.1.3.3|MetaCyc:PSERPHOSPHA-RXN Do not confuse with protein phosphatases. For protein phosphatases, consider GO:0004722 ; protein serine/threonine phosphatase activity or GO:0008138 ; protein tyrosine/serine/threonine phosphatase activity. bf 2013-09-16T13:01:03Z GO:0004647 molecular_function owl:Class GO:0102134 biolink:NamedThing (22S)-22-hydroxy-campesterol C-23 hydroxylase activity Catalysis of the reaction: H+ + (22S)-22-hydroxycampesterol + NADPH + O2 <=> (22R,23R)-22,23-dihydroxycampesterol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11529 molecular_function owl:Class GO:0043949 biolink:NamedThing regulation of cAMP-mediated signaling Any process which modulates the frequency, rate or extent of cAMP-mediated signaling, a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl regulation of cAMP-mediated signalling biological_process owl:Class GO:0051894 biolink:NamedThing positive regulation of focal adhesion assembly Any process that activates or increases the frequency, rate or extent of focal adhesion assembly, the establishment and maturation of focal adhesions. tmpzr1t_l9r_go_relaxed.owl activation of focal adhesion formation|stimulation of focal adhesion formation|up-regulation of focal adhesion formation|upregulation of focal adhesion formation|up regulation of focal adhesion formation biological_process owl:Class GO:0032955 biolink:NamedThing regulation of division septum assembly Any process that modulates the frequency, rate or extent of division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of division septum formation GO:1902468|GO:1901138 biological_process owl:Class GO:0001925 biolink:NamedThing negative regulation of B-1 B cell differentiation Any process that stops, prevents, or reduces the rate of B-1 B cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of B-1 B cell differentiation|down regulation of B-1 B cell differentiation|inhibition of B-1 B cell differentiation|downregulation of B-1 B cell differentiation|negative regulation of B-1 B-lymphocyte differentiation|negative regulation of B-1 B-cell differentiation|negative regulation of B-1 B cell development|negative regulation of B-1 B lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0010544 biolink:NamedThing negative regulation of platelet activation Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900454 biolink:NamedThing positive regulation of long-term synaptic depression Any process that activates or increases the frequency, rate or extent of long term synaptic depression. tmpzr1t_l9r_go_relaxed.owl activation of LTD|upregulation of LTD|up-regulation of long term depression|activation of long term synaptic depression|up-regulation of long term synaptic depression|upregulation of long term depression|up regulation of long term synaptic depression|upregulation of long term synaptic depression|up regulation of long term depression|positive regulation of long term depression|up-regulation of LTD|up regulation of LTD|positive regulation of long term synaptic depression|positive regulation of LTD|activation of long term depression rl 2012-04-27T03:55:23Z biological_process owl:Class GO:0046998 biolink:NamedThing (S)-usnate reductase activity Catalysis of the reaction: (6R)-2-acetyl-6-(3-acetyl-2,4,6-trihydroxy-5-methylphenyl)-3-hydroxy-6-methylcyclohexa-2,4-dien-1-one + NAD(+) = (S)-usnate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl reduced-(S)-usnate:NAD+ oxidoreductase (ether-bond-forming)|L-usnic acid dehydrogenase activity KEGG_REACTION:R07345|RHEA:21876|EC:1.1.1.199|MetaCyc:1.1.1.199-RXN molecular_function owl:Class GO:0055008 biolink:NamedThing cardiac muscle tissue morphogenesis The process in which the anatomical structures of cardiac muscle tissue are generated and organized. tmpzr1t_l9r_go_relaxed.owl heart muscle morphogenesis|myocardium morphogenesis biological_process owl:Class GO:0099637 biolink:NamedThing neurotransmitter receptor transport The directed movement of neurotransmitter receptors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009628 biolink:NamedThing response to abiotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (not derived from living organisms) stimulus. tmpzr1t_l9r_go_relaxed.owl response to abiotic stress https://github.com/geneontology/go-ontology/issues/16572 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0050849 biolink:NamedThing negative regulation of calcium-mediated signaling Any process that stops, prevents, or reduces the frequency, rate or extent of calcium-mediated signaling. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium-mediated signaling|inhibition of calcium-mediated signaling|downregulation of calcium-mediated signaling|negative regulation of calcium-mediated signalling|down regulation of calcium-mediated signaling biological_process owl:Class GO:1901014 biolink:NamedThing 3alpha(S)-strictosidine catabolic process The chemical reactions and pathways resulting in the breakdown of 3alpha(S)-strictosidine. tmpzr1t_l9r_go_relaxed.owl 3alpha(S)-strictosidine catabolism|3alpha(S)-strictosidine breakdown|3alpha(S)-strictosidine degradation yaf 2012-06-15T10:47:19Z biological_process owl:Class GO:1901013 biolink:NamedThing 3alpha(S)-strictosidine metabolic process The chemical reactions and pathways involving 3alpha(S)-strictosidine. tmpzr1t_l9r_go_relaxed.owl 3alpha(S)-strictosidine metabolism yaf 2012-06-15T10:46:57Z biological_process owl:Class GO:1902668 biolink:NamedThing negative regulation of axon guidance Any process that stops, prevents or reduces the frequency, rate or extent of axon guidance. tmpzr1t_l9r_go_relaxed.owl down regulation of axon growth cone guidance|inhibition of axon growth cone guidance|down-regulation of axon growth cone guidance|downregulation of axon chemotaxis|down regulation of axon chemotaxis|negative regulation of axon pathfinding|downregulation of axon guidance|negative regulation of axon growth cone guidance|downregulation of axon pathfinding|downregulation of axon growth cone guidance|down-regulation of axon guidance|down-regulation of axon pathfinding|inhibition of axon guidance|negative regulation of axon chemotaxis|down-regulation of axon chemotaxis|inhibition of axon pathfinding|down regulation of axon pathfinding|inhibition of axon chemotaxis|down regulation of axon guidance hjd 2014-01-31T18:50:19Z biological_process owl:Class GO:2001014 biolink:NamedThing regulation of skeletal muscle cell differentiation Any process that modulates the frequency, rate or extent of skeletal muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-11T08:54:37Z biological_process owl:Class GO:0018810 biolink:NamedThing trans-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate hydratase activity Catalysis of the reaction: trans-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate + H2O = pyruvate + 3-hydroxy-2-formylbenzothiophene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0164 molecular_function owl:Class GO:1905116 biolink:NamedThing positive regulation of lateral attachment of mitotic spindle microtubules to kinetochore Any process that activates or increases the frequency, rate or extent of lateral attachment of mitotic spindle microtubules to kinetochore. tmpzr1t_l9r_go_relaxed.owl activation of lateral attachment of mitotic spindle microtubules to kinetochore|up-regulation of lateral attachment of mitotic spindle microtubules to kinetochore|up regulation of lateral attachment of mitotic spindle microtubules to kinetochore|upregulation of lateral attachment of mitotic spindle microtubules to kinetochore al 2016-04-07T14:25:34Z biological_process owl:Class GO:0062164 biolink:NamedThing regulation of pseudohyphal septin ring assembly Any process that modulates the rate, frequency or extent of pseudohyphal septin ring assembly. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-07T15:52:20Z biological_process owl:Class GO:0010959 biolink:NamedThing regulation of metal ion transport Any process that modulates the frequency, rate, or extent of metal ion transport. Metal ion transport is the directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-06T11:40:55Z biological_process owl:Class GO:0051882 biolink:NamedThing mitochondrial depolarization The process in which the potential difference across the mitochondrial membrane is reduced from its steady state level. tmpzr1t_l9r_go_relaxed.owl mitochondrion depolarization|mitochondrial depolarisation|mitochondrial membrane depolarization|mitochondria depolarization biological_process owl:Class GO:0036482 biolink:NamedThing neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a neuron in response to hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl H2O2-induced neuron intrinsic apoptotic signaling pathway|neuron intrinsic apoptotic signaling pathway in response to H2O2|neuron apoptosis in response to hydrogen peroxide|hydrogen peroxide-induced neuronal apoptosis|hydrogen peroxide-induced neuron apoptosis bf 2014-08-14T13:23:32Z biological_process owl:Class GO:0036480 biolink:NamedThing neuron intrinsic apoptotic signaling pathway in response to oxidative stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a neuron. The pathway is induced in response to oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl oxidative stress-induced neuronal apoptosis|neuron apoptosis in response to oxidative stress|oxidative stress-induced neuron apoptosis bf 2014-08-14T13:13:44Z biological_process owl:Class GO:0031545 biolink:NamedThing peptidyl-proline 4-dioxygenase activity Catalysis of the reaction: peptidyl L-proline + 2-oxoglutarate + O2 = peptidyl trans-4-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl HIF-type prolyl 4-hydroxylase|prolyl 4-hydroxylase Reactome:R-HSA-1234179|Reactome:R-HSA-1234177|Reactome:R-HSA-1234166|Reactome:R-HSA-1234181|Reactome:R-HSA-1234165|Reactome:R-HSA-1234173 molecular_function owl:Class GO:0031543 biolink:NamedThing peptidyl-proline dioxygenase activity Catalysis of the reaction: peptidyl L-proline + 2-oxoglutarate + O2 = peptidyl hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl prolyl hydroxylase activity|proline hydroxylase activity|proline,2-oxoglutarate 4-dioxygenase activity|prolyl 4-hydroxylase activity molecular_function owl:Class GO:0075118 biolink:NamedThing modulation by symbiont of host G protein-coupled receptor signal transduction Any process in which the symbiont modulates the frequency, rate or extent of the host G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host signal transduction mediated by G-protein gamma subunit|modulation by symbiont of host signal transduction mediated by G-protein beta subunit|modulation by symbiont of host G-protein coupled receptor protein signal transduction|modulation by symbiont of host signal transduction mediated by G-protein alpha subunit Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont G protein-coupled receptor signal transduction ; GO:0075087". GO:0075124|GO:0075121|GO:0075127 biological_process owl:Class GO:0075112 biolink:NamedThing modulation by symbiont of host transmembrane receptor-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont transmembrane receptor-mediated signal transduction ; GO:0075081". biological_process owl:Class GO:0006209 biolink:NamedThing cytosine catabolic process The chemical reactions and pathways resulting in the breakdown of cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives. tmpzr1t_l9r_go_relaxed.owl cytosine breakdown|cytosine catabolism|cytosine degradation biological_process owl:Class GO:0051583 biolink:NamedThing dopamine uptake involved in synaptic transmission The directed movement of dopamine into a presynaptic neuron or glial cell. In this context, dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline. tmpzr1t_l9r_go_relaxed.owl dopamine import involved in synaptic transmission|dopamine reuptake involved in synaptic transmission biological_process owl:Class GO:0090494 biolink:NamedThing dopamine uptake The directed movement of dopamine into a cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-17T11:12:09Z biological_process owl:Class GO:0019745 biolink:NamedThing pentacyclic triterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. tmpzr1t_l9r_go_relaxed.owl pentacyclic triterpenoid biosynthesis|pentacyclic triterpenoid anabolism|pentacyclic triterpenoid formation|pentacyclic triterpenoid synthesis biological_process owl:Class GO:0010828 biolink:NamedThing positive regulation of glucose transmembrane transport Any process that increases the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucose transport biological_process owl:Class GO:0010827 biolink:NamedThing regulation of glucose transmembrane transport Any process that modulates the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of glucose transport biological_process owl:Class GO:1902529 biolink:NamedThing negative regulation of protein linear polyubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein linear polyubiquitination. tmpzr1t_l9r_go_relaxed.owl downregulation of M1 linkage|negative regulation of M1 linkage|down regulation of M1 linkage|down-regulation of M1 linkage|inhibition of protein linear polyubiquitination|inhibition of M1 linkage|down regulation of protein linear polyubiquitination|down-regulation of protein linear polyubiquitination|downregulation of protein linear polyubiquitination ppm 2013-12-02T10:03:09Z biological_process owl:Class GO:1902528 biolink:NamedThing regulation of protein linear polyubiquitination Any process that modulates the frequency, rate or extent of protein linear polyubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of M1 linkage ppm 2013-12-02T10:03:00Z biological_process owl:Class GO:0015420 biolink:NamedThing ABC-type vitamin B12 transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: vitamin B12(out) + ATP + H2O = ADP + an vitamin B12(in) + H+ + phosphate. Vitamin B12 is alkylcob(III)alamin. tmpzr1t_l9r_go_relaxed.owl vitamin B12 porter activity|vitamin B12-transporting ATPase activity|ATPase-coupled vitamin B12 transmembrane transporter activity|ATP-dependent cobalamin transmembrane transporter activity|cobalamin-transporting ATPase activity|ATP-dependent vitamin B12 transmembrane transporter activity|ATPase-coupled cobalamin transmembrane transporter activity|cobalamin porter activity|vitamin B12 ABC transporter activity|cobalamin ABC transporter|cobalamin transporter activity|vitamin B12 transporter activity https://github.com/geneontology/go-ontology/issues/21353 Reactome:R-HSA-3095901|Reactome:R-HSA-3000238|MetaCyc:ABC-5-RXN|RHEA:17873|Reactome:R-HSA-3315437|EC:7.6.2.8|MetaCyc:3.6.3.33-RXN GO:0102023|GO:0015235 molecular_function owl:Class GO:0070911 biolink:NamedThing global genome nucleotide-excision repair The nucleotide-excision repair process in which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome. tmpzr1t_l9r_go_relaxed.owl global genome NER|GG-NER|global genomic repair|global genomic nucleotide-excision repair|GGR mah 2009-09-09T03:13:11Z biological_process owl:Class GO:1900934 biolink:NamedThing positive regulation of nonadec-1-ene metabolic process Any process that activates or increases the frequency, rate or extent of nonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of nonadec-1-ene metabolic process|upregulation of nonadec-1-ene metabolic process|activation of nonadec-1-ene metabolism|positive regulation of nonadec-1-ene metabolism|up regulation of nonadec-1-ene metabolism|up-regulation of nonadec-1-ene metabolism|upregulation of nonadec-1-ene metabolism|up-regulation of nonadec-1-ene metabolic process|up regulation of nonadec-1-ene metabolic process tt 2012-06-14T03:11:58Z biological_process owl:Class GO:0097691 biolink:NamedThing bacterial extracellular vesicle Small membrane vesicle (< 1 um) that buds off a prokaryotic cell plasma membrane, able to carry proteins, phospholipids, lipopolysaccharides, nucleic acids, viruses, and more. Important in intercellular communication and pathogenesis; can exist within host cells. tmpzr1t_l9r_go_relaxed.owl pr 2015-09-24T11:31:44Z cellular_component owl:Class GO:0030140 biolink:NamedThing trans-Golgi network transport vesicle A vesicle that mediates transport between the trans-Golgi network and other parts of the cell. tmpzr1t_l9r_go_relaxed.owl trans-Golgi network constitutive secretory pathway transport vesicle|TGN transport vesicle cellular_component owl:Class GO:0021720 biolink:NamedThing superior olivary nucleus formation The process that gives rise to the superior olivary nucleus. This process pertains to the initial formation of a structure from unspecified parts. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051593 biolink:NamedThing response to folic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to folate|cellular response to vitamin B9 biological_process owl:Class GO:0035970 biolink:NamedThing peptidyl-threonine dephosphorylation The removal of phosphoric residues from peptidyl-O-phospho-L-threonine to form peptidyl-threonine. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-08T02:57:11Z biological_process owl:Class GO:0099631 biolink:NamedThing postsynaptic endocytic zone cytoplasmic component The cytoplasmic component of the postsynaptic endocytic zone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099738 biolink:NamedThing cell cortex region The complete extent of cell cortex that underlies some some region of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl perimembrane region cellular_component owl:Class GO:0120166 biolink:NamedThing protoperithecium formation The process of producing fruiting body precursors, called protoperithecia. Protoperitheicium is a spherical structure that is formed in the sexual phase of ascomycetous fungi such as Neurospora crassa and Sordaria macrospora. Protoperithecium is formed by the enveloping of ascogonia cells by sterile hyphae and it develops into perithecium. tmpzr1t_l9r_go_relaxed.owl Note that this term represents protoperithecium formation across homothallic and heterothallic species that do not have the same mechanism. krc 2018-05-17T17:27:16Z biological_process owl:Class GO:0030582 biolink:NamedThing reproductive fruiting body development The process whose specific outcome is the progression of a reproductive fruiting body over time, from its formation to the mature structure. A reproductive fruiting body is a multicellular reproductive structure that contains spores. tmpzr1t_l9r_go_relaxed.owl fruiting body formation This term describes the development of a fruiting body that is a spore-bearing organ. It is not intended to describe the development of myxococcal fruiting bodies. biological_process owl:Class GO:1901925 biolink:NamedThing negative regulation of protein import into nucleus during spindle assembly checkpoint Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus, and that occurs as a response to the mitotic cell cycle spindle assembly checkpoint. In S. cerevisiae, this process involves inhibition of the karyopherin/importin Kap121p (also known as Pse1p), which acts as the specific nuclear import receptor for several proteins, including Glc7p. Glc7p functions in opposition to key spindle assembly checkpoint protein Aurora kinase (Ipl1p). tmpzr1t_l9r_go_relaxed.owl KTIP|negative regulation of protein import into nucleus during mitotic cell cycle spindle assembly checkpoint|Kap121p transport inhibitory pathway pr 2013-02-17T20:55:16Z biological_process owl:Class GO:0072479 biolink:NamedThing response to mitotic cell cycle spindle assembly checkpoint signaling A process that occurs in response to signals generated as a result of mitotic cell cycle spindle assembly checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to Dma1-dependent checkpoint signaling|mitotic cell cycle spindle assembly checkpoint effector process|response to signal involved in mitotic cell cycle spindle assembly checkpoint|response to Dma1-dependent checkpoint signalling mah 2010-12-09T12:11:31Z GO:0044811 biological_process owl:Class GO:0051238 biolink:NamedThing sequestering of metal ion The process of binding or confining metal ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl metal ion sequestering|metal ion retention|retention of metal ion|metal ion sequestration|metal ion storage|storage of metal ion|sequestration of metal ion biological_process owl:Class GO:0051235 biolink:NamedThing maintenance of location Any process in which a cell, substance or cellular entity, such as a protein complex or organelle, is maintained in a location and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of localization|retention|sequestering|storage biological_process owl:Class GO:0006026 biolink:NamedThing aminoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl aminoglycan degradation|aminoglycan catabolism|aminoglycan breakdown biological_process owl:Class GO:0009682 biolink:NamedThing induced systemic resistance A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075184 biolink:NamedThing regulation of infection cushion formation Any process that modulates the frequency, rate or extent of symbiont infection cushion formation. tmpzr1t_l9r_go_relaxed.owl regulation of infection cushion formation on or near host biological_process owl:Class GO:0019661 biolink:NamedThing glucose catabolic process to lactate via pyruvate The anaerobic enzymatic chemical reactions and pathways resulting in the breakdown of glucose to lactate, via canonical glycolysis, yielding energy in the form of adenosine triphosphate (ATP). tmpzr1t_l9r_go_relaxed.owl homolactic fermentation|homofermentation|glucose fermentation to lactate via pyruvate|homofermentative lactate fermentation|homofermentative pathway|homolactate fermentation MetaCyc:ANAEROFRUCAT-PWY biological_process owl:Class GO:0019660 biolink:NamedThing glycolytic fermentation Fermentation that includes the anaerobic conversion of glucose to pyruvate via the glycolytic pathway. tmpzr1t_l9r_go_relaxed.owl MetaCyc:Pyruvate-Degredation biological_process owl:Class GO:0034445 biolink:NamedThing negative regulation of plasma lipoprotein oxidation Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein particle oxidation, occurring in the blood plasma. tmpzr1t_l9r_go_relaxed.owl negative regulation of plasma lipoprotein particle oxidation|inhibition of plasma lipoprotein oxidation biological_process owl:Class GO:1990890 biolink:NamedThing netrin receptor binding Binding to a netrin receptor. tmpzr1t_l9r_go_relaxed.owl kmv 2015-11-02T22:56:07Z molecular_function owl:Class GO:0001809 biolink:NamedThing positive regulation of type IV hypersensitivity Any process that activates or increases the frequency, rate or extent of type IV hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl up-regulation of type IV hypersensitivity|upregulation of type IV hypersensitivity|stimulation of type IV hypersensitivity|activation of type IV hypersensitivity|up regulation of type IV hypersensitivity biological_process owl:Class GO:0001807 biolink:NamedThing regulation of type IV hypersensitivity Any process that modulates the frequency, rate, or extent of type IV hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002356 biolink:NamedThing peripheral B cell negative selection Any process leading to negative selection of B cells in the periphery. tmpzr1t_l9r_go_relaxed.owl peripheral B-cell negative selection|peripheral B lymphocyte negative selection|peripheral B-lymphocyte negative selection biological_process owl:Class GO:0002343 biolink:NamedThing peripheral B cell selection Any B cell selection process that occurs in the periphery. tmpzr1t_l9r_go_relaxed.owl peripheral B lymphocyte selection|peripheral B-lymphocyte selection|peripheral B-cell selection biological_process owl:Class GO:0034718 biolink:NamedThing SMN-Gemin2 complex A protein complex that contains the survival motor neuron (SMN) protein and Gemin2; may form the stable core of the larger SMN complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046149 biolink:NamedThing pigment catabolic process The chemical reactions and pathways resulting in the breakdown of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. tmpzr1t_l9r_go_relaxed.owl pigment breakdown|pigment degradation|pigment catabolism biological_process owl:Class GO:0102909 biolink:NamedThing alpha-ketoglutarate reductase activity (NADH-dependent) Catalysis of the reaction: NAD + 2-hydroxyglutarate = H+ + 2-oxoglutarate + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8645 molecular_function owl:Class GO:0050420 biolink:NamedThing maltose synthase activity Catalysis of the reaction: 2 alpha-D-glucose 1-phosphate = maltose + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl alpha-D-glucose-1-phosphate:alpha-D-glucose-1-phosphate 4-alpha-D-glucosyltransferase (dephosphorylating) RHEA:22320|MetaCyc:MALTOSE-SYNTHASE-RXN|EC:2.4.1.139 molecular_function owl:Class GO:0046566 biolink:NamedThing DOPA dioxygenase activity Catalysis of the 4,5-ring opening reaction: 3,4-dihydroxyphenylalanine + O2 = 4,5-seco-DOPA. 4,5-seco-DOPA spontaneously recyclizes to form betalamic acid. tmpzr1t_l9r_go_relaxed.owl dihydroxyphenylalanine dioxygenase activity MetaCyc:RXN-8460 molecular_function owl:Class GO:0046431 biolink:NamedThing (R)-4-hydroxymandelate metabolic process The chemical reactions and pathways involving (R)-4-hydroxymandelate, the anion of a hydroxylated derivative of mandelate (alpha-hydroxybenzeneacetate). tmpzr1t_l9r_go_relaxed.owl (R)-4-hydroxymandelate metabolism biological_process owl:Class GO:1900108 biolink:NamedThing negative regulation of nodal signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of nodal signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of nodal signaling|negative regulation of nodal signalling pathway|down regulation of nodal signaling pathway|down-regulation of nodal signaling pathway|inhibition of nodal signaling pathway|inhibition of nodal signaling|down regulation of nodal signaling|down-regulation of nodal signaling|downregulation of nodal signaling pathway|negative regulation of nodal signaling bf 2012-02-16T03:34:23Z biological_process owl:Class GO:0032926 biolink:NamedThing negative regulation of activin receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of activin receptor signaling pathway|negative regulation of activin signalling pathway|inhibition of activin receptor signaling pathway|downregulation of activin receptor signaling pathway|negative regulation of activin receptor signalling pathway|down regulation of activin receptor signaling pathway|negative regulation of activin signaling pathway biological_process owl:Class GO:0018652 biolink:NamedThing toluene-sulfonate methyl-monooxygenase activity Catalysis of the reaction: toluene-4-sulfonate + NADH + O2 = NAD+ + OH- + 4-sulfobenzyl alcohol. tmpzr1t_l9r_go_relaxed.owl toluene-sulphonate methyl-monooxygenase activity RHEA:51024|UM-BBD_reactionID:r0290|MetaCyc:TSMOS-RXN molecular_function owl:Class GO:0031403 biolink:NamedThing lithium ion binding Binding to a lithium ion (Li+). tmpzr1t_l9r_go_relaxed.owl Li+ ion binding molecular_function owl:Class GO:0046983 biolink:NamedThing protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006045 biolink:NamedThing N-acetylglucosamine biosynthetic process The chemical reactions and pathways resulting in the formation of N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine anabolism|N-acetylglucosamine synthesis|N-acetylglucosamine biosynthesis|N-acetylglucosamine formation biological_process owl:Class GO:1901073 biolink:NamedThing glucosamine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of glucosamine-containing compounds (glucosamines). tmpzr1t_l9r_go_relaxed.owl glucosamines anabolism|glucosamines synthesis|glucosamine-containing compound synthesis|glucosamine-containing compound biosynthesis|glucosamines biosynthesis|glucosamine-containing compound formation|glucosamine-containing compound anabolism|glucosamines formation|glucosamines biosynthetic process bf 2012-07-02T03:18:33Z biological_process owl:Class GO:0032721 biolink:NamedThing negative regulation of lymphotoxin A production Any process that stops, prevents, or reduces the frequency, rate, or extent of lymphotoxin A production. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphotoxin A production|negative regulation of tumor necrosis factor-beta production|down regulation of lymphotoxin A production|negative regulation of lymphotoxin A biosynthetic process|negative regulation of lymphotoxin-alpha production|inhibition of lymphotoxin A production|negative regulation of TNF-beta production|down-regulation of lymphotoxin A production|negative regulation of LTA production GO:0043018 biological_process owl:Class GO:0031855 biolink:NamedThing oxytocin receptor binding Binding to an oxytocin receptor. tmpzr1t_l9r_go_relaxed.owl oxytocin receptor ligand molecular_function owl:Class GO:1900234 biolink:NamedThing regulation of Kit signaling pathway Any process that modulates the frequency, rate or extent of Kit signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of stem cell factor receptor signaling pathway|regulation of stem cell factor signaling pathway|regulation of Kit signalling pathway bf 2012-03-23T02:54:13Z biological_process owl:Class GO:0009517 biolink:NamedThing PSII associated light-harvesting complex II Protein-pigment complex associated with photosystem II. tmpzr1t_l9r_go_relaxed.owl LHCII cellular_component owl:Class GO:0009503 biolink:NamedThing thylakoid light-harvesting complex A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050604 biolink:NamedThing taxadiene 5-alpha-hydroxylase activity Catalysis of the reaction: AH(2) + O(2) + taxa-4,11-diene = A + H(2)O + taxa-4(20),11-dien-5alpha-ol. tmpzr1t_l9r_go_relaxed.owl taxadiene 5alpha-hydroxylase activity|taxadiene 5a-hydroxylase activity|taxa-4,11-diene,hydrogen-donor:oxygen oxidoreductase (5alpha-hydroxylating) RHEA:14049|KEGG_REACTION:R06306|EC:1.14.14.176|MetaCyc:1.14.99.37-RXN molecular_function owl:Class GO:0033123 biolink:NamedThing positive regulation of purine nucleotide catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides. tmpzr1t_l9r_go_relaxed.owl positive regulation of purine nucleotide breakdown|positive regulation of purine nucleotide degradation|positive regulation of purine nucleotide catabolism biological_process owl:Class GO:1900544 biolink:NamedThing positive regulation of purine nucleotide metabolic process Any process that activates or increases the frequency, rate or extent of purine nucleotide metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of purine metabolism|upregulation of purine metabolic process|activation of purine nucleotide metabolic process|upregulation of purine metabolism|up-regulation of purine metabolism|up regulation of purine metabolic process|positive regulation of purine metabolic process|up-regulation of purine nucleotide metabolic process|upregulation of purine nucleotide metabolism|positive regulation of purine nucleotide metabolism|activation of purine metabolism|up-regulation of purine nucleotide metabolism|upregulation of purine nucleotide metabolic process|up regulation of purine nucleotide metabolic process|up regulation of purine metabolism|activation of purine nucleotide metabolism|up regulation of purine nucleotide metabolism|activation of purine metabolic process|up-regulation of purine metabolic process krc 2012-05-11T05:44:43Z biological_process owl:Class GO:0072267 biolink:NamedThing metanephric capsule specification The regionalization process in which the identity of the metanephric capsule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:57:36Z biological_process owl:Class GO:0072268 biolink:NamedThing pattern specification involved in metanephros development Any developmental process that results in the creation of defined areas or spaces within the metanephros to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl metanephros pattern formation|pattern formation involved in metanephros development|metanephros pattern specification mah 2010-03-30T03:06:30Z biological_process owl:Class GO:1904153 biolink:NamedThing negative regulation of retrograde protein transport, ER to cytosol Any process that stops, prevents or reduces the frequency, rate or extent of retrograde protein transport, ER to cytosol. tmpzr1t_l9r_go_relaxed.owl down-regulation of retrograde protein transport, endoplasmic reticulum to cytosol|down-regulation of protein dislocation from ER|downregulation of retrograde protein transport, endoplasmic reticulum to cytosol|negative regulation of protein dislocation from ER|downregulation of protein dislocation from ER|negative regulation of protein retrotranslocation from ER|negative regulation of retrograde protein transport, endoplasmic reticulum to cytosol|down regulation of retrograde protein transport, endoplasmic reticulum to cytosol|down regulation of protein dislocation from ER|inhibition of retrograde protein transport, ER to cytosol|downregulation of retrograde protein transport, ER to cytosol|down-regulation of retrograde protein transport, ER to cytosol|inhibition of protein dislocation from ER|inhibition of retrograde protein transport, endoplasmic reticulum to cytosol|down regulation of retrograde protein transport, ER to cytosol bf 2015-04-15T09:23:13Z biological_process owl:Class GO:0050551 biolink:NamedThing myrcene synthase activity Catalysis of the reaction: geranyl diphosphate = diphosphate + myrcene. tmpzr1t_l9r_go_relaxed.owl geranyl-diphosphate diphosphate-lyase (myrcene-forming) activity EC:4.2.3.15|RHEA:16965|MetaCyc:RXN-5110|KEGG_REACTION:R02009 molecular_function owl:Class GO:0051543 biolink:NamedThing regulation of elastin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031488 biolink:NamedThing myosin XVIII complex A myosin complex containing a class XVIII myosin heavy chain and associated light chains; myosin XVIII heavy chains contain an N-terminal PDZ domain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905433 biolink:NamedThing negative regulation of retrograde trans-synaptic signaling by neuropeptide Any process that stops, prevents or reduces the frequency, rate or extent of retrograde trans-synaptic signaling by neuropeptide. tmpzr1t_l9r_go_relaxed.owl inhibition of neuropeptide-mediated retrograde trans-synaptic signaling|inhibition of retrograde trans-synaptic signaling by neuropeptide|negative regulation of neuropeptide-mediated retrograde trans-synaptic signaling|downregulation of retrograde trans-synaptic signaling by neuropeptide|down-regulation of retrograde trans-synaptic signaling by neuropeptide|down regulation of retrograde trans-synaptic signaling by neuropeptide bf 2016-09-14T10:56:55Z biological_process owl:Class GO:0046380 biolink:NamedThing N-acetylneuraminate biosynthetic process The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid. tmpzr1t_l9r_go_relaxed.owl N-acetylneuraminate biosynthesis|N-acetylneuraminate anabolism|N-acetylneuraminate formation|N-acetylneuraminate synthesis biological_process owl:Class GO:1904825 biolink:NamedThing protein localization to microtubule plus-end A process in which a protein is transported to, or maintained in, a location at a microtubule plus-end. tmpzr1t_l9r_go_relaxed.owl protein localisation to microtubule plus-end mah 2015-11-23T12:34:09Z biological_process owl:Class GO:0090317 biolink:NamedThing negative regulation of intracellular protein transport Any process that decreases the frequency, rate or extent of the directed movement of proteins within cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-16T03:45:07Z biological_process owl:Class GO:0002018 biolink:NamedThing renin-angiotensin regulation of aldosterone production The process in which an increase in active angiotensin stimulates the adrenal cortices to secrete aldosterone. tmpzr1t_l9r_go_relaxed.owl renin-angiotensin control of aldosterone production biological_process owl:Class GO:2000445 biolink:NamedThing positive regulation of toll-like receptor 21 signaling pathway Any process that activates or increases the frequency, rate or extent of toll-like receptor 21 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR21 signaling pathway|positive regulation of toll-like receptor 21 signalling pathway bf 2011-03-04T10:33:00Z biological_process owl:Class GO:1990404 biolink:NamedThing protein ADP-ribosylase activity The transfer, from NAD, of ADP-ribose to a protein amino acid residue. tmpzr1t_l9r_go_relaxed.owl ribosylase activity pg 2014-06-24T07:04:44Z molecular_function owl:Class GO:1904514 biolink:NamedThing positive regulation of initiation of premeiotic DNA replication Any process that activates or increases the frequency, rate or extent of initiation of premeiotic DNA replication. tmpzr1t_l9r_go_relaxed.owl upregulation of meiotic DNA replication initiation|upregulation of initiation of meiotic DNA synthesis|up-regulation of meiotic DNA replication initiation|positive regulation of meiotic DNA replication initiation|positive regulation of initiation of meiotic DNA synthesis|upregulation of premeiotic DNA replication initiation|up regulation of premeiotic DNA replication initiation|up regulation of initiation of premeiotic DNA synthesis|up-regulation of premeiotic DNA replication initiation|activation of initiation of premeiotic DNA replication|up regulation of initiation of premeiotic DNA replication|activation of premeiotic DNA replication initiation|up regulation of initiation of meiotic DNA synthesis|activation of initiation of meiotic DNA synthesis|activation of meiotic DNA replication initiation|positive regulation of initiation of premeiotic DNA synthesis|upregulation of initiation of premeiotic DNA replication|up-regulation of initiation of meiotic DNA synthesis|up-regulation of initiation of premeiotic DNA synthesis|up regulation of meiotic DNA replication initiation|upregulation of initiation of premeiotic DNA synthesis|positive regulation of premeiotic DNA replication initiation|up-regulation of initiation of premeiotic DNA replication|activation of initiation of premeiotic DNA synthesis mah 2015-07-28T12:59:29Z biological_process owl:Class GO:0098902 biolink:NamedThing regulation of membrane depolarization during action potential Any process that modulates the rate, frequency or extent of membrane depolarization during an action potential. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071662 biolink:NamedThing negative regulation of granzyme B production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of granzyme B. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0052832 biolink:NamedThing inositol monophosphate 3-phosphatase activity Catalysis of the reaction: myo-inositol 3-phosphate + H2O = myo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl EC:3.1.3.25|Reactome:R-HSA-1855210|MetaCyc:MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN|RHEA:30739 ai 2011-11-29T11:00:09Z molecular_function owl:Class GO:0052834 biolink:NamedThing inositol monophosphate phosphatase activity Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl L-myo-inositol-phosphate phosphatase activity|inositol phosphatase activity|myo-inositol monophosphatase activity|myo-inositol-phosphate phosphohydrolase activity|inositol-phosphate phosphatase activity|myo-inositol-1(or 4)-phosphate phosphohydrolase activity|myo-inositol-phosphatase activity|myo-inositol phosphatase activity|inositol-1(or 4)-monophosphatase activity RHEA:24056|MetaCyc:RXN-10949|EC:3.1.3.25 ai 2011-11-29T11:15:58Z molecular_function owl:Class GO:0102052 biolink:NamedThing indole-3-acetyl-proline synthetase activity Catalysis of the reaction: indole-3-acetate + L-proline + ATP(4-) <=> H+ + indole-3-acetyl-proline + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10434 molecular_function owl:Class GO:0150145 biolink:NamedThing positive regulation of CD80 production Any process that activates or increases the frequency, rate or extent of CD80 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD80 biosynthetic process bc 2019-12-08T10:29:00Z biological_process owl:Class GO:0032733 biolink:NamedThing positive regulation of interleukin-10 production Any process that activates or increases the frequency, rate, or extent of interleukin-10 production. tmpzr1t_l9r_go_relaxed.owl up regulation of interleukin-10 production|activation of interleukin-10 production|upregulation of interleukin-10 production|positive regulation of interleukin-10 biosynthetic process|positive regulation of IL-10 production|up-regulation of interleukin-10 production|positive regulation of interleukin-10 secretion|stimulation of interleukin-10 production GO:0045082|GO:2001181 biological_process owl:Class GO:0015115 biolink:NamedThing silicate transmembrane transporter activity Enables the transfer of silicates from one side of a membrane to the other. Silicates are the salts of silicic acids, and are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004463 biolink:NamedThing leukotriene-A4 hydrolase activity Catalysis of the reaction: H(2)O + leukotriene A(4) = leukotriene B(4). tmpzr1t_l9r_go_relaxed.owl leukotriene A4 hydrolase activity|leukotriene A(4) hydrolase activity|LTA4 hydrolase activity|LTA-4 hydrolase activity|(7E,9E,11Z,14Z)-(5S,6S)-5,6-epoxyicosa-7,9,11,14-tetraenoate hydrolase activity|LTA4H MetaCyc:LEUKOTRIENE-A4-HYDROLASE-RXN|KEGG_REACTION:R03057|RHEA:22324|Reactome:R-HSA-266072|EC:3.3.2.6 molecular_function owl:Class GO:0150106 biolink:NamedThing regulation of protein localization to cell-cell junction Any process that modulates the frequency, rate or extent of protein localization to cell-cell junction. tmpzr1t_l9r_go_relaxed.owl bc 2019-06-11T11:17:15Z biological_process owl:Class GO:0099124 biolink:NamedThing axonal dopamine secretion The regulated release of dopamine from an axon. tmpzr1t_l9r_go_relaxed.owl axonal dopamine release|axonal DA release biological_process owl:Class GO:0014046 biolink:NamedThing dopamine secretion The regulated release of dopamine by a cell. Dopamine is a catecholamine and a precursor of adrenaline and noradrenaline. It acts as a neurotransmitter in the central nervous system but it is also produced peripherally and acts as a hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902656 biolink:NamedThing calcium ion import into cytosol The directed movement of calcium ion into a cytosol. tmpzr1t_l9r_go_relaxed.owl calcium import into cytosol pr 2014-01-22T13:41:11Z biological_process owl:Class GO:0070509 biolink:NamedThing calcium ion import The directed movement of calcium ions into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl transmembrane calcium influx|calcium ion uptake biological_process owl:Class GO:0120282 biolink:NamedThing autolysosome lumen The volume that is enclosed within the autolysosome single-membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20239 krc 2020-11-17T02:53:51Z cellular_component owl:Class GO:1903253 biolink:NamedThing hercynylcysteine sulfoxide biosynthetic process The chemical reactions and pathways resulting in the formation of hercynylcysteine sulfoxide. tmpzr1t_l9r_go_relaxed.owl hercynylcysteine sulfoxide anabolism|hercynylcysteine sulfoxide formation|hercynylcysteine sulfoxide synthesis|hercynylcysteine sulfoxide biosynthesis mah 2014-08-06T09:14:00Z biological_process owl:Class GO:1903252 biolink:NamedThing hercynylcysteine sulfoxide metabolic process The chemical reactions and pathways involving hercynylcysteine sulfoxide. tmpzr1t_l9r_go_relaxed.owl hercynylcysteine sulfoxide metabolism mah 2014-08-06T09:13:50Z biological_process owl:Class GO:0014865 biolink:NamedThing detection of activity The series of events in which an activity stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904884 biolink:NamedThing positive regulation of telomerase catalytic core complex assembly Any process that activates or increases the frequency, rate or extent of telomerase catalytic core complex assembly. tmpzr1t_l9r_go_relaxed.owl activation of telomerase catalytic core complex assembly|positive regulation of TERT-TERC complex assembly|up-regulation of TERT-TERC complex assembly|positive regulation of TERT-TERC complex formation|activation of TERT-TERC complex assembly|upregulation of TERT-TERC complex formation|up regulation of telomerase catalytic core complex assembly|up regulation of telomerase catalytic core complex formation|up regulation of TERT-TERC complex assembly|upregulation of TERT-TERC complex assembly|positive regulation of telomerase catalytic core complex formation|activation of telomerase catalytic core complex formation|upregulation of telomerase catalytic core complex formation|upregulation of telomerase catalytic core complex assembly|up-regulation of telomerase catalytic core complex formation|up regulation of TERT-TERC complex formation|activation of TERT-TERC complex formation|up-regulation of TERT-TERC complex formation|up-regulation of telomerase catalytic core complex assembly rph 2016-01-05T10:36:16Z biological_process owl:Class GO:0034845 biolink:NamedThing naphthyl-2-methyl-succinyl-CoA dehydrogenase activity Catalysis of the reaction: naphthyl-2-methyl-succinyl-CoA = naphthyl-2-methylene-succinyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.3.99.-|UM-BBD_reactionID:r1258 molecular_function owl:Class GO:0061112 biolink:NamedThing negative regulation of bud outgrowth involved in lung branching Any process that decreases the rate, frequency, or extent of bud outgrowth involved in lung branching. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-05T11:20:42Z biological_process owl:Class GO:0002370 biolink:NamedThing natural killer cell cytokine production Any process that contributes to cytokine production by a natural killer cell. tmpzr1t_l9r_go_relaxed.owl NK cell cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:2000874 biolink:NamedThing regulation of glyoxylate cycle Any process that modulates the frequency, rate or extent of glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl regulation of glyoxylate bypass bf 2011-07-27T01:27:10Z biological_process owl:Class GO:1905834 biolink:NamedThing response to pyrimidine ribonucleotide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pyrimidine ribonucleotide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2017-01-17T19:23:59Z biological_process owl:Class GO:1905426 biolink:NamedThing positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation Any process that activates or increases the frequency, rate or extent of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|positive regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wingless signalling pathway involved in mDA neuron differentiation|activation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wingless signaling pathway involved in mDA neuron differentiation|upregulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wg signalling pathway involved in midbrain DA neurogenesis|upregulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|up regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|positive regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|upregulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|activation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|upregulation of Wnt signaling pathway involved in mDA neuron differentiation|upregulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|positive regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt-mediated midbrain DA neuron differentiation|up regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wg signaling pathway involved in mDA neuron differentiation|positive regulation of Wnt signaling pathway involved in mDA neuron differentiation|activation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|up regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|up regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wingless signalling pathway involved in mDA neuron differentiation|activation of Wg signalling pathway involved in midbrain dopaminergic neuron production|upregulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wg signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|activation of frizzled signalling pathway involved in midbrain DA neurogenesis|activation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|upregulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|activation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of frizzled signaling pathway involved in mDA neuron differentiation|up-regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wingless signalling pathway involved in mDA neuron differentiation|up-regulation of Wg signalling pathway involved in midbrain DA neurogenesis|activation of Wnt-activated signaling pathway involved in mDA neuron differentiation|activation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|upregulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|activation of Wg signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|positive regulation of Wg signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wingless signalling pathway involved in mDA neuron differentiation|positive regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of frizzled signaling pathway involved in mDA neuron differentiation|up-regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|upregulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wg signaling pathway involved in midbrain DA neurogenesis|up regulation of Wingless signaling pathway involved in mDA neuron differentiation|upregulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|up-regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of midbrain dopaminergic neuron differentiation by positive regulation of Wnt signaling|activation of frizzled signalling pathway involved in mDA neuron differentiation|activation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|up regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|up regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|up regulation of frizzled signaling pathway involved in mDA neuron differentiation|upregulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|up regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|upregulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wingless signaling pathway involved in midbrain DA neurogenesis|up-regulation of frizzled signalling pathway involved in mDA neuron differentiation|up regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|activation of Wg signaling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|activation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|activation of Wg signalling pathway involved in mDA neuron differentiation|upregulation of Wg signaling pathway involved in mDA neuron differentiation|up-regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of frizzled signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|up-regulation of Wnt-mediated midbrain DA neuron differentiation|up regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wg signaling pathway involved in mDA neuron differentiation|positive regulation of frizzled signaling pathway involved in mDA neuron differentiation|up-regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|activation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|activation of Wingless signaling pathway involved in midbrain DA neurogenesis|upregulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt-mediated midbrain DA neuron differentiation|up regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|activation of Wnt receptor signaling pathway involved in mDA neuron differentiation|upregulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wg signalling pathway involved in mDA neuron differentiation|up regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|upregulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of frizzled signaling pathway involved in mDA neuron differentiation|positive regulation of frizzled signalling pathway involved in mDA neuron differentiation|activation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|upregulation of Wg signalling pathway involved in mDA neuron differentiation|up-regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|up regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|positive regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|positive regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wnt signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt signaling pathway involved in mDA neuron differentiation|upregulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|up-regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|activation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|upregulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|activation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wg signaling pathway involved in midbrain DA neurogenesis|activation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|positive regulation of Wg signalling pathway involved in mDA neuron differentiation|positive regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|upregulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of frizzled signaling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt-mediated midbrain DA neuron differentiation|up regulation of Wg signaling pathway involved in mDA neuron differentiation|up regulation of Wg signalling pathway involved in mDA neuron differentiation|upregulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of frizzled signalling pathway involved in mDA neuron differentiation|activation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wnt-mediated midbrain DA neuron differentiation|upregulation of Wingless signaling pathway involved in mDA neuron differentiation|up-regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|upregulation of frizzled signalling pathway involved in mDA neuron differentiation|activation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wg signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|activation of Wingless signaling pathway involved in mDA neuron differentiation|up-regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|positive regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|activation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|upregulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|activation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|upregulation of Wg signalling pathway involved in midbrain DA neurogenesis|up-regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|activation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|up-regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|up-regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|positive regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|upregulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|upregulation of Wg signaling pathway involved in midbrain DA neurogenesis|activation of Wingless signalling pathway involved in midbrain DA neurogenesis|activation of Wnt signaling pathway involved in mDA neuron differentiation|up regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|up-regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|up regulation of Wnt signaling pathway involved in mDA neuron differentiation|positive regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|activation of Wnt receptor signalling pathway involved in mDA neuron differentiation|up regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|up regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|up-regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|positive regulation of Wingless signaling pathway involved in mDA neuron differentiation|activation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|activation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|up regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|activation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|positive regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|upregulation of frizzled signalling pathway involved in midbrain DA neurogenesis|upregulation of Wingless signalling pathway involved in midbrain DA neurogenesis|positive regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|activation of Wg signaling pathway involved in mDA neuron differentiation|upregulation of Wingless signalling pathway involved in mDA neuron differentiation|upregulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|positive regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|upregulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|up regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|positive regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|positive regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation bf 2016-09-07T10:03:51Z biological_process owl:Class GO:0022832 biolink:NamedThing voltage-gated channel activity Enables the transmembrane transfer of a solute by a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905907 biolink:NamedThing negative regulation of amyloid fibril formation Any process that stops, prevents or reduces the frequency, rate or extent of amyloid fibril formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of amyloid structure formation|down-regulation of amyloid structure assembly|downregulation of amyloid structure formation|downregulation of amyloid structure assembly|down-regulation of amyloid fibril assembly|inhibition of amyloid structure formation|negative regulation of amyloid fibril assembly|down-regulation of amyloid fibril formation|inhibition of amyloid structure assembly|down regulation of amyloid structure assembly|down regulation of amyloid fibril assembly|down-regulation of amyloid structure formation|downregulation of amyloid fibril formation|inhibition of amyloid fibril assembly|down regulation of amyloid structure formation|inhibition of amyloid fibril formation|negative regulation of amyloid structure assembly|downregulation of amyloid fibril assembly|down regulation of amyloid fibril formation Although deposition of amyloid fibrils is associated with diseases, e.g. Alzheimer's disease, amyloid formation is a normal process. Disease occurs when the balance between amyloid formation and clearance is disrupted (reviewed e.g. in PMID:29654159 and PMID:28937655). An example of a normal amyloid complex is composed of human RIP1 and RIP3 kinases (PMID:22817896). bc 2017-02-03T15:43:56Z biological_process owl:Class GO:0032649 biolink:NamedThing regulation of interferon-gamma production Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. tmpzr1t_l9r_go_relaxed.owl regulation of type II interferon production|regulation of interferon-gamma biosynthetic process|regulation of interferon-gamma secretion GO:0045072|GO:1902713 biological_process owl:Class GO:0039652 biolink:NamedThing induction by virus of host NF-kappaB cascade Any process in which a virus starts, promotes, or enhances a host NF-kappaB cascade. tmpzr1t_l9r_go_relaxed.owl activation by virus of host NF-kappaB transcription factor activity|activation of host NF-kappa-B by virus VZ:841 bf 2012-10-11T16:04:31Z biological_process owl:Class GO:0001971 biolink:NamedThing negative regulation of activation of membrane attack complex Any process that stops, prevents, or reduces the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of MAC formation|downregulation of activation of membrane attack complex|negative regulation of activation of terminal complement complex|negative regulation of membrane attack complex assembly|negative regulation of activation of MAC|negative regulation of activation of the terminal complement cascade|negative regulation of membrane attack complex formation|negative regulation of MAC assembly|negative regulation of activation of TCC|inhibition of activation of membrane attack complex|down regulation of activation of membrane attack complex|down-regulation of activation of membrane attack complex biological_process owl:Class GO:0044301 biolink:NamedThing climbing fiber The axon of inferior olive neuron that projects to the cerebellar cortex, largely via the inferior cerebellar peduncle. They range in diameter from 1-3 um and are myelinated until they enter the granule cell layer. They give off collaterals to the deep cerebellar nuclei. They synapse extensively with the dendrites of Purkinje cells in the molecular layer, where each fiber branches repeatedly to climb along the Purkinje cell dendritic tree. Each Purkinje cell is innervated by only a single climbing fiber. tmpzr1t_l9r_go_relaxed.owl climbing fibre NIF_Subcellular:nlx_subcell_20090203 jl 2010-02-05T11:20:56Z cellular_component owl:Class GO:1905047 biolink:NamedThing mitotic spindle pole body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl vw 2016-03-14T09:48:42Z biological_process owl:Class GO:0051300 biolink:NamedThing spindle pole body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spindle pole body (SPB). The SPB is the microtubule organizing center in fungi, and is functionally homologous to the animal cell centrosome. tmpzr1t_l9r_go_relaxed.owl spindle pole body organisation|spindle pole body maturation|spindle pole body organization and biogenesis|SPB organization|SPB maturation GO:0051426 biological_process owl:Class GO:0071496 biolink:NamedThing cellular response to external stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. mah 2009-12-18T02:36:52Z biological_process owl:Class GO:0120215 biolink:NamedThing positive regulation of histidine biosynthetic process Any process that activates or increases the frequency, rate or extent of histidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of histidine anabolism|up regulation of histidine biosynthetic process|up-regulation of histidine anabolism|positive regulation of histidine formation|up regulation of histidine anabolism|up regulation of histidine formation|up-regulation of histidine synthesis|activation of histidine synthesis|activation of histidine anabolism|activation of histidine biosynthetic process|activation of histidine formation|up regulation of histidine synthesis|upregulation of histidine biosynthetic process|upregulation of histidine biosynthesis|up-regulation of histidine biosynthetic process|up-regulation of histidine biosynthesis|positive regulation of histidine anabolism|positive regulation of histidine biosynthesis|upregulation of histidine formation|positive regulation of histidine synthesis|activation of histidine biosynthesis|up regulation of histidine biosynthesis|upregulation of histidine synthesis|up-regulation of histidine formation krc 2019-06-27T20:57:28Z biological_process owl:Class GO:0042998 biolink:NamedThing positive regulation of Golgi to plasma membrane protein transport Any process that activates or increases the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of Golgi to plasma membrane protein transport|stimulation of Golgi to plasma membrane protein transport|up regulation of Golgi to plasma membrane protein transport|activation of Golgi to plasma membrane protein transport|up-regulation of Golgi to plasma membrane protein transport biological_process owl:Class GO:0006680 biolink:NamedThing glucosylceramide catabolic process The chemical reactions and pathways resulting in the breakdown of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl glucosylceramide degradation|glucosylceramide breakdown|glucosylceramide catabolism biological_process owl:Class GO:0051331 biolink:NamedThing meiotic G2 phase The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by meiosis. tmpzr1t_l9r_go_relaxed.owl G2 phase of meiotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1902481 biolink:NamedThing gamma-tubulin complex assembly The aggregation, arrangement and bonding together of a set of components to form a gamma-tubulin complex. tmpzr1t_l9r_go_relaxed.owl gamma-tubulin complex formation mah 2013-11-04T13:21:12Z biological_process owl:Class GO:1901931 biolink:NamedThing alpha-copaene biosynthetic process The chemical reactions and pathways resulting in the formation of alpha-copaene. tmpzr1t_l9r_go_relaxed.owl alpha-copaene formation|alpha-copaene synthesis|alpha-copaene anabolism|alpha-copaene biosynthesis ms 2013-02-18T14:54:48Z biological_process owl:Class GO:1901929 biolink:NamedThing alpha-copaene metabolic process The chemical reactions and pathways involving alpha-copaene. tmpzr1t_l9r_go_relaxed.owl alpha-copaene metabolism ms 2013-02-18T14:54:39Z biological_process owl:Class GO:1904883 biolink:NamedThing negative regulation of telomerase catalytic core complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of telomerase catalytic core complex assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of TERT-TERC complex formation|negative regulation of telomerase catalytic core complex formation|inhibition of telomerase catalytic core complex assembly|downregulation of telomerase catalytic core complex formation|down-regulation of TERT-TERC complex assembly|inhibition of telomerase catalytic core complex formation|down-regulation of telomerase catalytic core complex formation|down regulation of telomerase catalytic core complex formation|down-regulation of TERT-TERC complex formation|negative regulation of TERT-TERC complex formation|downregulation of TERT-TERC complex assembly|inhibition of TERT-TERC complex assembly|negative regulation of TERT-TERC complex assembly|down-regulation of telomerase catalytic core complex assembly|down regulation of telomerase catalytic core complex assembly|downregulation of TERT-TERC complex formation|inhibition of TERT-TERC complex formation|down regulation of TERT-TERC complex assembly|downregulation of telomerase catalytic core complex assembly rph 2016-01-05T10:36:09Z biological_process owl:Class GO:1904882 biolink:NamedThing regulation of telomerase catalytic core complex assembly Any process that modulates the frequency, rate or extent of telomerase catalytic core complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of TERT-TERC complex assembly|regulation of TERT-TERC complex formation|regulation of telomerase catalytic core complex formation rph 2016-01-05T10:36:01Z biological_process owl:Class GO:0016726 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.17.1.- molecular_function owl:Class GO:0099158 biolink:NamedThing regulation of recycling endosome localization within postsynapse Any process that modulates the frequency, rate or extent of transport or maintenance of location of a postsynaptic recycling endosome within the postsynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-08-25T15:37:50Z biological_process owl:Class GO:0061938 biolink:NamedThing protein localization to somatodendritic compartment A process in which a protein is transported to or maintained in a location within the somatodendritic compartment. tmpzr1t_l9r_go_relaxed.owl somatodendritic protein localization dph 2017-09-08T13:22:26Z biological_process owl:Class GO:0000919 biolink:NamedThing cell plate assembly The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast. tmpzr1t_l9r_go_relaxed.owl cell plate formation biological_process owl:Class GO:1903277 biolink:NamedThing negative regulation of sodium ion export across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl down regulation of sodium export|down-regulation of sodium export|negative regulation of sodium ion export from cell|downregulation of sodium export|downregulation of sodium ion export|down-regulation of sodium ion export from cell|negative regulation of sodium ion export|down-regulation of sodium ion export|inhibition of sodium ion export from cell|down regulation of sodium ion export|negative regulation of sodium export|inhibition of sodium ion export|inhibition of sodium export|down regulation of sodium ion export from cell|downregulation of sodium ion export from cell rl 2014-08-08T17:10:22Z GO:1903274 biological_process owl:Class GO:1902306 biolink:NamedThing negative regulation of sodium ion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl down regulation of sodium ion membrane transport|downregulation of sodium ion membrane transport|down regulation of sodium ion transmembrane transport|downregulation of sodium ion transmembrane transport|inhibition of sodium ion membrane transport|negative regulation of sodium ion membrane transport|down-regulation of sodium ion transmembrane transport|down-regulation of sodium ion membrane transport|inhibition of sodium ion transmembrane transport rl 2013-07-18T13:34:01Z biological_process owl:Class GO:1902242 biolink:NamedThing copal-8-ol diphosphate(3-) catabolic process The chemical reactions and pathways resulting in the breakdown of copal-8-ol diphosphate(3-). tmpzr1t_l9r_go_relaxed.owl copal-8-ol diphosphate(3-) degradation|copal-8-ol diphosphate(3-) catabolism|copal-8-ol diphosphate(3-) breakdown ms 2013-06-20T09:09:33Z biological_process owl:Class GO:1902241 biolink:NamedThing copal-8-ol diphosphate(3-) metabolic process The chemical reactions and pathways involving copal-8-ol diphosphate(3-). tmpzr1t_l9r_go_relaxed.owl copal-8-ol diphosphate(3-) metabolism ms 2013-06-20T09:09:27Z biological_process owl:Class GO:0032253 biolink:NamedThing dense core granule localization Any process in which a dense core granule is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl dense core vesicle localization|dense core granule localisation|dense core granule clustering biological_process owl:Class GO:0051941 biolink:NamedThing regulation of amino acid uptake involved in synaptic transmission Any process that modulates the frequency, rate or extent of the directed movement of amino acid neurotransmitters into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl regulation of amino acid neurotransmitter reuptake|regulation of amino acid neurotransmitter uptake|regulation of amino acid uptake during transmission of nerve impulse biological_process owl:Class GO:0060346 biolink:NamedThing bone trabecula formation The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod. tmpzr1t_l9r_go_relaxed.owl bone trabeculation|skeletal trabecula biogenesis|bone trabecula biogenesis|skeletal trabecula formation|skeletal trabeculation biological_process owl:Class GO:0071250 biolink:NamedThing cellular response to nitrite Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrite stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T03:03:49Z biological_process owl:Class GO:1905008 biolink:NamedThing regulation of L-lysine import across plasma membrane Any process that modulates the frequency, rate or extent of L-lysine import into cell. tmpzr1t_l9r_go_relaxed.owl regulation of lysine import|regulation of lysine uptake|regulation of L-lysine import into cell sl 2016-03-02T00:15:49Z GO:0010805 biological_process owl:Class GO:0051887 biolink:NamedThing regulation of timing of exogen Any process that modulates the frequency, rate or extent of timing of exogen, the shedding phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl regulation of exogen biological_process owl:Class GO:0035351 biolink:NamedThing heme transmembrane transport The process in which heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl heme membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:45:46Z biological_process owl:Class GO:0018708 biolink:NamedThing thiol S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a thiol = S-adenosyl-L-homocysteine + a thioether. tmpzr1t_l9r_go_relaxed.owl thiol methyltransferase activity|TMT|S-adenosyl-L-methionine:thiol S-methyltransferase activity UM-BBD_enzymeID:e0146|Reactome:R-HSA-175976|RHEA:18277|EC:2.1.1.9|MetaCyc:THIOL-S-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0016480 biolink:NamedThing negative regulation of transcription by RNA polymerase III Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription from RNA polymerase III promoter|down-regulation of transcription from RNA polymerase III promoter|down regulation of transcription from RNA polymerase III promoter|negative regulation of transcription from RNA polymerase III promoter|negative regulation of transcription from Pol III promoter|downregulation of transcription from RNA polymerase III promoter biological_process owl:Class GO:0034367 biolink:NamedThing protein-containing complex remodeling The acquisition, loss, or modification of macromolecules within a complex, resulting in the alteration of an existing complex. tmpzr1t_l9r_go_relaxed.owl macromolecular complex remodeling biological_process owl:Class GO:0061931 biolink:NamedThing positive regulation of erythrocyte enucleation Any process that increases the frequency, rate or extent of erythrocyte enucleation. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T12:57:33Z biological_process owl:Class GO:0072022 biolink:NamedThing descending thin limb development The process whose specific outcome is the progression of the descending thin limb over time, from its formation to the mature structure. The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:37:47Z biological_process owl:Class GO:0006226 biolink:NamedThing dUMP biosynthetic process The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dUMP anabolism|dUMP formation|dUMP biosynthesis|dUMP synthesis biological_process owl:Class GO:0008364 biolink:NamedThing pupal chitin-based cuticle development Synthesis and deposition of a chitin-based pupal cuticle. At the end of the prepupal period the insect is covered by the pupal cuticle which continues to be elaborated into the pupal period. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl pupal cuticle synthesis|pupal cuticle formation|pupal cuticle anabolism biological_process owl:Class GO:0042337 biolink:NamedThing cuticle development involved in chitin-based cuticle molting cycle The synthesis and deposition of a chitin-based non-cellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl cuticle anabolism during molting|cuticle biosynthetic process during molting|cuticle synthesis during molting|cuticle formation during molting|chitin-based cuticle development during molting biological_process owl:Class GO:0018867 biolink:NamedThing alpha-pinene metabolic process The chemical reactions and pathways involving alpha-pinene, a monoterpene that may be a significant factor affecting bacterial activities in nature. It is a major component in tea-tree oils, and gives off a piney smelling odor. tmpzr1t_l9r_go_relaxed.owl alpha-pinene metabolism UM-BBD_pathwayID:apn biological_process owl:Class GO:0033073 biolink:NamedThing pinene metabolic process The chemical reactions and pathways involving the monoterpenoid pinene; alpha-pinene is (1S,5S)-2,6,6-trimethylbicyclo[3.1.1]hept-2-ene, and beta-pinene is (1S,5S)-6,6-dimethyl-2-methylenebicyclo[3.1.1]heptane. tmpzr1t_l9r_go_relaxed.owl pinene metabolism biological_process owl:Class GO:0006664 biolink:NamedThing glycolipid metabolic process The chemical reactions and pathways involving glycolipids, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar group acylated by one or more fatty acids and the glycerol group may be absent. tmpzr1t_l9r_go_relaxed.owl glycolipid metabolism biological_process owl:Class GO:0033876 biolink:NamedThing glycochenodeoxycholate sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + glycochenodeoxycholate = adenosine 3',5'-diphosphate + glycochenodeoxycholate 7-sulfate + H(+). tmpzr1t_l9r_go_relaxed.owl BAST|3'-phosphoadenylyl-sulfate:glycochenodeoxycholate 7-sulfotransferase activity|bile acid:PAPS:sulfotransferase activity|bile acid:3'-phosphoadenosine-5'-phosphosulfate sulfotransferase activity MetaCyc:2.8.2.34-RXN|EC:2.8.2.34|KEGG_REACTION:R07289|RHEA:17689 molecular_function owl:Class GO:0045071 biolink:NamedThing negative regulation of viral genome replication Any process that stops, prevents, or reduces the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl down-regulation of viral genome replication|downregulation of viral genome replication|down regulation of viral genome replication|inhibition of viral genome replication biological_process owl:Class GO:0034655 biolink:NamedThing nucleobase-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide and nucleic acid catabolism|nucleobase, nucleoside, nucleotide and nucleic acid catabolic process|nucleobase, nucleoside, nucleotide and nucleic acid breakdown|nucleobase, nucleoside, nucleotide and nucleic acid degradation biological_process owl:Class GO:1903505 biolink:NamedThing regulation of establishment of actomyosin contractile ring localization involved in mitotic cell cycle Any process that modulates the frequency, rate or extent of establishment of actomyosin contractile ring localization involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl al 2014-10-01T13:59:19Z biological_process owl:Class GO:1902471 biolink:NamedThing regulation of mitotic actomyosin contractile ring localization Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl mah 2013-10-24T14:20:03Z biological_process owl:Class GO:0080004 biolink:NamedThing thalian-diol desaturase activity Catalysis of the reaction: a thalian-diol = a desaturated thalian-diol. This reaction is the introduction of a double bond to a thalian-diol molecule at carbon 15. tmpzr1t_l9r_go_relaxed.owl EC:1.14.21.-|MetaCyc:RXN-9637 molecular_function owl:Class GO:1901915 biolink:NamedThing positive regulation of capsule organization Any process that activates or increases the frequency, rate or extent of capsule organization. tmpzr1t_l9r_go_relaxed.owl up regulation of capsule organization|positive regulation of capsule organization and biogenesis|activation of capsule organization|up regulation of capsule organization and biogenesis|up regulation of capsule organisation|positive regulation of capsule organisation|activation of capsule organisation|up-regulation of capsule organization and biogenesis|up-regulation of capsule organization|upregulation of capsule organisation|up-regulation of capsule organisation|upregulation of capsule organization|activation of capsule organization and biogenesis|upregulation of capsule organization and biogenesis di 2013-02-14T06:19:16Z biological_process owl:Class GO:0044174 biolink:NamedThing host cell endosome A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation. tmpzr1t_l9r_go_relaxed.owl host endosome jl 2009-09-04T03:02:01Z cellular_component owl:Class GO:0051561 biolink:NamedThing positive regulation of mitochondrial calcium ion concentration Any process that increases the concentration of calcium ions in mitochondria. tmpzr1t_l9r_go_relaxed.owl elevation of mitochondrial calcium ion concentration|mitochondrial calcium ion concentration elevation|elevation of calcium ion concentration in mitochondria|elevation of calcium ion concentration in mitochondrion biological_process owl:Class GO:0051560 biolink:NamedThing mitochondrial calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions within the cytoplasm of a cell or between mitochondria and their surroundings. tmpzr1t_l9r_go_relaxed.owl calcium ion homeostasis in mitochondrion|calcium ion homeostasis in mitochondria|regulation of calcium ion concentration in mitochondrion|regulation of mitochondrial calcium ion concentration|regulation of calcium ion concentration in mitochondria|mitochondrial calcium ion concentration regulation biological_process owl:Class GO:0072327 biolink:NamedThing vulval cell fate specification The process in which a cell becomes capable of differentiating autonomously into a nematode vulval cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed adult vulva, which is the egg-laying organ of female and hermaphrodite nematodes. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-01T02:14:06Z biological_process owl:Class GO:1903857 biolink:NamedThing negative regulation of cytokinin dehydrogenase activity Any process that stops, prevents or reduces the frequency, rate or extent of cytokinin dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of N6-dimethylallyladenine:acceptor oxidoreductase activity|downregulation of 6-N-dimethylallyladenine:acceptor oxidoreductase activity|down regulation of cytokinin dehydrogenase activity|negative regulation of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|down-regulation of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|down-regulation of N6-dimethylallyladenine:acceptor oxidoreductase activity|inhibition of cytokinin oxidase activity|downregulation of cytokinin oxidase activity|down-regulation of cytokinin dehydrogenase activity|down regulation of cytokinin oxidase activity|negative regulation of cytokinin oxidase activity|down regulation of N6-dimethylallyladenine:acceptor oxidoreductase activity|downregulation of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|downregulation of N6-dimethylallyladenine:acceptor oxidoreductase activity|down-regulation of cytokinin oxidase activity|down-regulation of 6-N-dimethylallyladenine:acceptor oxidoreductase activity|negative regulation of 6-N-dimethylallyladenine:acceptor oxidoreductase activity|inhibition of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|inhibition of cytokinin dehydrogenase activity|inhibition of 6-N-dimethylallyladenine:acceptor oxidoreductase activity|inhibition of N6-dimethylallyladenine:acceptor oxidoreductase activity|downregulation of cytokinin dehydrogenase activity|down regulation of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|down regulation of 6-N-dimethylallyladenine:acceptor oxidoreductase activity tb 2015-01-30T00:34:01Z biological_process owl:Class GO:0090523 biolink:NamedThing cytochrome-b5 reductase activity, acting on NADPH Catalysis of the reaction: NADPH + H+ + 2 ferricytochrome b(5) = NADP+ + 2 ferrocytochrome b(5). tmpzr1t_l9r_go_relaxed.owl cytochrome-b5 reductase activity RHEA:64576 tb 2013-01-11T12:21:41Z molecular_function owl:Class GO:0051732 biolink:NamedThing polyribonucleotide kinase activity Catalysis of the reaction: NTP + 5'-dephospho-RNA = NDP + 5'-phospho-RNA. tmpzr1t_l9r_go_relaxed.owl RNA kinase activity|5'-hydroxyl RNA kinase activity|RNA 5'-hydroxyl kinase activity|5'-hydroxyl polyribonucleotide kinase activity molecular_function owl:Class GO:0009324 biolink:NamedThing D-amino-acid dehydrogenase complex A protein complex that possesses D-amino-acid dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'D-amino-acid oxidase activity ; GO:0003884'. cellular_component owl:Class GO:0072209 biolink:NamedThing metanephric mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesangial cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T11:56:44Z biological_process owl:Class GO:0033172 biolink:NamedThing gas vesicle shell The proteinaceous structure surrounding a gas vesicle. tmpzr1t_l9r_go_relaxed.owl gas vesicle membrane|gas vesicle wall cellular_component owl:Class GO:0062139 biolink:NamedThing camera-type eye photoreceptor cell development The process whose specific outcome is the progression of a light-responsive receptor in a camera-type eye over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2019-08-06T12:40:36Z biological_process owl:Class GO:0031321 biolink:NamedThing ascospore-type prospore assembly During ascospore formation, the process in which each haploid nucleus becomes encapsulated by a double membrane. tmpzr1t_l9r_go_relaxed.owl forespore formation|ascospore-type prospore formation biological_process owl:Class GO:0033917 biolink:NamedThing exo-poly-alpha-galacturonosidase activity Catalysis of the hydrolysis of pectic acid from the non-reducing end, releasing digalacturonate. tmpzr1t_l9r_go_relaxed.owl exopolygalacturonosidase activity|exopolygalacturanosidase activity RHEA:56232|MetaCyc:3.2.1.82-RXN|EC:3.2.1.82 molecular_function owl:Class GO:0052782 biolink:NamedThing amino disaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of any amino disaccharide, a disaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-03T08:56:04Z biological_process owl:Class GO:0052779 biolink:NamedThing amino disaccharide metabolic process The chemical reactions and pathways involving any amino disaccharide, a disaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions. tmpzr1t_l9r_go_relaxed.owl 2011-10-03T08:47:05Z biological_process owl:Class GO:0080006 biolink:NamedThing internode patterning Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019867 biolink:NamedThing outer membrane The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001054 biolink:NamedThing RNA polymerase I activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase activity involved in transcription from RNA polymerase I promoter krc 2010-09-23T03:36:11Z molecular_function owl:Class GO:0032672 biolink:NamedThing regulation of interleukin-3 production Any process that modulates the frequency, rate, or extent of interleukin-3 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-3 biosynthetic process|regulation of IL-3 production GO:0045399 biological_process owl:Class GO:0009329 biolink:NamedThing acetate CoA-transferase complex A heterotetrameric enzyme complex made up of two alpha subunits and two beta subunits. Part of the acetyl-CoA carboxylase complex. Catalyzes the transfer of a carboxyl group to form malonyl-CoA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032706 biolink:NamedThing negative regulation of interleukin-22 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-22 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-22 production|negative regulation of IL-22 production|inhibition of interleukin-22 production|down-regulation of interleukin-22 production|downregulation of interleukin-22 production|negative regulation of interleukin-22 biosynthetic process GO:0045394 biological_process owl:Class GO:0042549 biolink:NamedThing photosystem II stabilization The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051886 biolink:NamedThing negative regulation of timing of anagen Any process that stops, prevents, or reduces the frequency, rate or extent of timing of anagen, the growth phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl down regulation of anagen|inhibition of anagen|downregulation of anagen|negative regulation of anagen|down-regulation of anagen biological_process owl:Class GO:0042376 biolink:NamedThing phylloquinone catabolic process The chemical reactions and pathways resulting in the breakdown of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants. tmpzr1t_l9r_go_relaxed.owl phytylmenaquinone catabolism|phytomenadione catabolic process|phytonadione catabolic process|phylloquinone catabolism|phylloquinone breakdown|vitamin K1 catabolic process|phytylmenaquinone catabolic process|phytonadione catabolism|phylloquinone degradation|phytomenadione catabolism|vitamin K1 catabolism biological_process owl:Class GO:0042374 biolink:NamedThing phylloquinone metabolic process The chemical reactions and pathways involving phylloquinone, a quinone-derived compound synthesized by green plants. Phylloquinone has vitamin K activity and is known as vitamin K1. tmpzr1t_l9r_go_relaxed.owl phytonadione metabolism|phylloquinone metabolism|vitamin K1 metabolic process|phytylmenaquinone metabolism|phytonadione metabolic process|phytomenadione metabolism|phytomenadione metabolic process|vitamin K1 metabolism|phytylmenaquinone metabolic process biological_process owl:Class GO:2001093 biolink:NamedThing galactotriose transport The directed movement of a galactotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:01:29Z biological_process owl:Class GO:1901446 biolink:NamedThing negative regulation of response to propan-1-ol Any process that stops, prevents or reduces the frequency, rate or extent of response to propan-1-ol. tmpzr1t_l9r_go_relaxed.owl inhibition of response to propan-1-ol|downregulation of response to propan-1-ol|down regulation of response to propan-1-ol|down-regulation of response to propan-1-ol tt 2012-10-02T14:13:52Z biological_process owl:Class GO:0015794 biolink:NamedThing glycerol-3-phosphate transmembrane transport The process in which glycerol-3-phosphate is transported across a membrane. Glycerol-3-phosphate is a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate transport biological_process owl:Class GO:1901900 biolink:NamedThing regulation of protein localization to cell division site Any process that modulates the frequency, rate or extent of protein localization to cell division site. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to cell division site dph 2013-02-11T12:27:55Z biological_process owl:Class GO:0000379 biolink:NamedThing tRNA-type intron splice site recognition and cleavage RNA processing that begins when the tertiary structure of a tRNA type intron is recognized, and ends when the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071078 biolink:NamedThing fibronectin-tissue transglutaminase complex A protein complex that consists of fibronectin bound to tissue transglutaminase, and is involved in cell adhesion. tmpzr1t_l9r_go_relaxed.owl FN-TGM2 complex mah 2009-11-06T04:42:22Z cellular_component owl:Class GO:0072686 biolink:NamedThing mitotic spindle A spindle that forms as part of mitosis. Mitotic and meiotic spindles contain distinctive complements of proteins associated with microtubules. tmpzr1t_l9r_go_relaxed.owl mah 2011-07-08T05:08:16Z cellular_component owl:Class GO:0045547 biolink:NamedThing dehydrodolichyl diphosphate synthase activity Catalysis of the condensation of isopentenyl diphosphate and farnesyl diphosphate in the cis-configuration to form dehydrodolichyl diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097094 biolink:NamedThing craniofacial suture morphogenesis The process in which any suture between cranial and/or facial bones is generated and organized. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-05T02:51:54Z biological_process owl:Class GO:0019124 biolink:NamedThing peptidyl-isoleucine racemization The racemization of peptidyl-isoleucine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0192 GO:0018370|GO:0018088 biological_process owl:Class GO:0035249 biolink:NamedThing synaptic transmission, glutamatergic The vesicular release of glutamate from a presynapse, across a chemical synapse, the subsequent activation of glutamate receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl glutamatergic synaptic transmission biological_process owl:Class GO:0014863 biolink:NamedThing detection of inactivity The series of events in which a inactivity stimulus is received by a cell or organism and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014854 biolink:NamedThing response to inactivity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inactivity stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098633 biolink:NamedThing collagen fibril binding Binding to a collagen fibril. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033395 biolink:NamedThing beta-alanine biosynthetic process via 3-hydroxypropionate The chemical reactions and pathways resulting in the formation of beta-alanine via the intermediate 3-hydroxypropionate. tmpzr1t_l9r_go_relaxed.owl beta-alanine synthesis via 3-hydroxypropionate|beta-alanine anabolism via 3-hydroxypropionate|beta-alanine biosynthesis via 3-hydroxypropionate|beta-alanine formation via 3-hydroxypropionate MetaCyc:PWY-3941 biological_process owl:Class GO:1902260 biolink:NamedThing negative regulation of delayed rectifier potassium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of delayed rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of delayed rectifier potassium channel activity|downregulation of delayed rectifier potassium channel activity|down regulation of delayed rectifier potassium channel activity|inhibition of delayed rectifier potassium channel activity rl 2013-06-25T12:16:24Z biological_process owl:Class GO:1905496 biolink:NamedThing regulation of triplex DNA binding Any process that modulates the frequency, rate or extent of triplex DNA binding. tmpzr1t_l9r_go_relaxed.owl ans 2016-09-26T14:57:09Z biological_process owl:Class GO:0009343 biolink:NamedThing biotin carboxylase complex An enzyme complex that catalyzes the formation of carboxybiotin-carboxyl-carrier protein from biotin-carboxyl-carrier protein and carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033181 biolink:NamedThing plasma membrane proton-transporting V-type ATPase complex A proton-transporting two-sector ATPase complex found in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane hydrogen ion-transporting ATPase cellular_component owl:Class GO:0033176 biolink:NamedThing proton-transporting V-type ATPase complex A proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across a concentration gradient. The resulting transmembrane electrochemical potential of H+ is used to drive a variety of (i) secondary active transport systems via H+-dependent symporters and antiporters and (ii) channel-mediated transport systems. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis. V-type ATPases are found in the membranes of organelles such as vacuoles, endosomes, and lysosomes, and in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl hydrogen-translocating V-type ATPase complex cellular_component owl:Class GO:0080016 biolink:NamedThing (-)-E-beta-caryophyllene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (-)-E-beta-caryophyllene + diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.57|MetaCyc:RXN-8414|RHEA:28294 molecular_function owl:Class GO:0009350 biolink:NamedThing ethanolamine ammonia-lyase complex An enzyme complex that catalyzes the breakdown of ethanolamine to form acetaldehyde and ammonia. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033708 biolink:NamedThing isocitrate-homoisocitrate dehydrogenase activity Catalysis of the reactions: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH, and (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate + NAD+ = 2-oxoadipate + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl PH1722|homoisocitrate-isocitrate dehydrogenase activity|isocitrate(homoisocitrate):NAD+ oxidoreductase (decarboxylating) activity MetaCyc:RXN-7969|EC:1.1.1.286 molecular_function owl:Class GO:2001230 biolink:NamedThing positive regulation of response to gamma radiation Any process that activates or increases the frequency, rate or extent of response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of response to gamma-ray photon|positive regulation of response to gamma ray yaf 2011-11-20T04:51:17Z biological_process owl:Class GO:0030971 biolink:NamedThing receptor tyrosine kinase binding Binding to a receptor that possesses protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase ligand binding molecular_function owl:Class GO:1990782 biolink:NamedThing protein tyrosine kinase binding Binding to protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl tyrosine kinase binding sl 2015-06-23T20:50:58Z molecular_function owl:Class GO:0140641 biolink:NamedThing mitotic spindle formation (spindle phase two) The spindle organization process in which the spindle is maintained at a constant length during mitotic metaphase. tmpzr1t_l9r_go_relaxed.owl metaphase spindle stabilization|metaphase spindle stability https://github.com/geneontology/go-ontology/issues/21349 pg 2021-05-11T08:15:15Z biological_process owl:Class GO:0090307 biolink:NamedThing mitotic spindle assembly Mitotic bipolar spindle assembly begins with spindle microtubule nucleation from the separated spindle pole body, includes spindle elongation during prometaphase, and is complete when all kinetochores are stably attached the spindle, and the spindle assembly checkpoint is satisfied. tmpzr1t_l9r_go_relaxed.owl spindle assembly involved in mitosis tb 2010-04-09T11:31:28Z biological_process owl:Class GO:0031415 biolink:NamedThing NatA complex A conserved complex that catalyzes the transfer of an acetyl group to an N-terminal Ser, Ala, Gly, or Thr residue of a protein acceptor molecule. In Saccharomyces the complex includes Nat1p and Ard1p, and may contain additional proteins. tmpzr1t_l9r_go_relaxed.owl N-terminal acetyltransferase A complex cellular_component owl:Class GO:1904360 biolink:NamedThing negative regulation of spore germination Any process that stops, prevents or reduces the frequency, rate or extent of spore germination. tmpzr1t_l9r_go_relaxed.owl inhibition of spore germination|downregulation of spore germination|down regulation of spore germination|down-regulation of spore germination|negative regulation of spore germination on or near host pf 2015-06-12T19:46:12Z GO:0075008 biological_process owl:Class GO:1904359 biolink:NamedThing regulation of spore germination Any process that modulates the frequency, rate or extent of spore germination. tmpzr1t_l9r_go_relaxed.owl modulation of spore germination on or near host pf 2015-06-12T19:46:06Z GO:0075006 biological_process owl:Class GO:0006064 biolink:NamedThing glucuronate catabolic process The chemical reactions and pathways resulting in the breakdown of glucuronate, any salt or ester of glucuronic acid. tmpzr1t_l9r_go_relaxed.owl glucuronate catabolism|glucuronate degradation|glucuronate breakdown biological_process owl:Class GO:0048227 biolink:NamedThing plasma membrane to endosome transport Transport of a vesicle from the plasma membrane to the endosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018131 biolink:NamedThing oxazole or thiazole biosynthetic process The chemical reactions and pathways resulting in the formation of oxazole or thiazole, five-membered heterocyclic ring structures containing an oxygen and a sulfur, respectively, in the 1-position and a nitrogen in the 3-position. tmpzr1t_l9r_go_relaxed.owl oxazole or thiazole anabolism|oxazole or thiazole formation|oxazole or thiazole synthesis|oxazole or thiazole biosynthesis biological_process owl:Class GO:0009325 biolink:NamedThing nitrate reductase complex An enzyme complex that catalyzes the formation of nitrate from nitrite with the concomitant reduction of an acceptor. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006668 biolink:NamedThing sphinganine-1-phosphate metabolic process The chemical reactions and pathways involving sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol. tmpzr1t_l9r_go_relaxed.owl dihydrosphingosine-1-phosphate metabolism|sphinganine-1-phosphate metabolism|dihydrosphingosine-1-phosphate metabolic process biological_process owl:Class GO:0060887 biolink:NamedThing limb epidermis development The process whose specific outcome is the progression of the epidermis of the limb over time, from its formation to the mature structure. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T12:39:39Z biological_process owl:Class GO:0047757 biolink:NamedThing chondroitin-glucuronate 5-epimerase activity Catalysis of the reaction: chondroitin D-glucuronate = dermatan L-iduronate. tmpzr1t_l9r_go_relaxed.owl chondroitin D-glucuronosyl 5-epimerase activity|dermatan-sulfate 5-epimerase activity|polyglucuronate 5-epimerase activity|chondroitin-D-glucuronate 5-epimerase activity|urunosyl C-5 epimerase activity Reactome:R-HSA-2022052|MetaCyc:CHONDROITIN-GLUCURONATE-5-EPIMERASE-RXN|EC:5.1.3.19|RHEA:21084 molecular_function owl:Class GO:0080185 biolink:NamedThing effector-mediated induction of plant hypersensitive response by symbiont A symbiont process in which a molecule secreted by the symbiont activates a resistance gene-dependent defense response signaling pathway in the plant host, in order to activate a hypersensitive response to induce necrosis. In the plant, this process involves the direct or indirect recognition of the symbiont effector protein for example through plant resistance receptor or R proteins (or R genes). tmpzr1t_l9r_go_relaxed.owl effector-triggered induction of host innate immune response|positive regulation by symbiont of plant HR|activation by symbiont of host resistance gene-dependent defense response|effector-triggered necrosis|ETI-triggered of host innate immune response|effector-triggered induction of plant hypersensitive response by symbiont|induction of effector-triggered immunity (ETI)|positive regulation by organism of host gene-for-gene resistance|induction by symbiont of host resistance gene-dependent defense response|avirulence protein|ETI triggered of host innate immune response|activation of HR|necrotrophic effector|induction by organism of defense response in host by specific elicitors|positive regulation by symbiont of host resistance gene-dependent defense response|induction by organism of resistance gene-dependent defense response of other organism involved in symbiotic interaction|positive regulation by organism of defense response in host by specific elicitors|induction by organism of host gene-for-gene resistance|activation by organism of host gene-for-gene resistance|induction by organism of pathogen-race/host plant cultivar-specific resistance in host|activation by organism of defense response in host by specific elicitors|positive regulation by symbiont of plant hypersensitive response|effector-triggered immunity|activation by organism of host resistance gene-dependent defense response|activation of hypersensitive response https://github.com/geneontology/go-ontology/issues/18694 Wikipedia:Effector-triggered_immunity dhl 2011-08-10T04:33:53Z GO:0052527|GO:0052101|GO:0052423|GO:0052286 biological_process owl:Class GO:0034053 biolink:NamedThing modulation by symbiont of host defense-related programmed cell death Any process in which a symbiont modulates the frequency, rate or extent of defense-related programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of plant HR|modulation by symbiont of host HR|modulation by symbiont of plant hypersensitive response|modulation by symbiont of host hypersensitive response|modulation by symbiont of host defense-related PCD Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term 'plant-type hypersensitive response ; GO:0009626'. biological_process owl:Class GO:0048397 biolink:NamedThing positive regulation of intermediate mesodermal cell fate determination Any process that activates or increases the frequency, rate or extent of intermediate mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl up-regulation of intermediate mesodermal cell fate determination|upregulation of intermediate mesodermal cell fate determination|stimulation of intermediate mesodermal cell fate determination|up regulation of intermediate mesodermal cell fate determination|activation of intermediate mesodermal cell fate determination biological_process owl:Class GO:0048336 biolink:NamedThing positive regulation of mesodermal cell fate determination Any process that activates or increases the frequency, rate or extent of mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl up regulation of mesodermal cell fate determination|upregulation of mesodermal cell fate determination|activation of mesodermal cell fate determination|stimulation of mesodermal cell fate determination|up-regulation of mesodermal cell fate determination biological_process owl:Class GO:0070876 biolink:NamedThing SOSS complex A protein complex that functions downstream of the MRN complex to promote DNA repair and the G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and is composed of SOSS-B (SOSS-B1/OBFC2B or SOSS-B2/OBFC2A), SOSS-A/INTS3 and SOSS-C/C9orf80. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-20T03:30:48Z cellular_component owl:Class GO:1902650 biolink:NamedThing negative regulation of histone H2A-H2B dimer displacement Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A-H2B dimer displacement. tmpzr1t_l9r_go_relaxed.owl downregulation of histone H2A-H2B dimer displacement|inhibition of histone H2A-H2B dimer displacement|down-regulation of histone H2A-H2B dimer displacement|down regulation of histone H2A-H2B dimer displacement di 2014-01-21T18:19:14Z biological_process owl:Class GO:1902649 biolink:NamedThing regulation of histone H2A-H2B dimer displacement Any process that modulates the frequency, rate or extent of histone H2A-H2B dimer displacement. tmpzr1t_l9r_go_relaxed.owl di 2014-01-21T18:19:04Z biological_process owl:Class GO:0072302 biolink:NamedThing negative regulation of metanephric glomerular mesangial cell proliferation Any process that decreases the frequency, rate or extent of metanephric glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0102125 biolink:NamedThing gibberellin A9 16alpha,17 epoxidase activity Catalysis of the reaction: gibberellin A9 + O2 + H+ + NAD(P)H <=> 16alpha, 17-epoxy gibberellin A9 + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11388 molecular_function owl:Class GO:0060271 biolink:NamedThing cilium assembly The assembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole. tmpzr1t_l9r_go_relaxed.owl microtubule-based flagellum assembly|ciliogenesis|cilium morphogenesis|cilium organization|cilium biogenesis|cilium formation Reactome:R-HSA-5617833.2 Note that we deem cilium and microtubule-based flagellum to be equivalent. GO:0042384 biological_process owl:Class GO:0019311 biolink:NamedThing sorbose metabolic process The chemical reactions and pathways involving sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid. tmpzr1t_l9r_go_relaxed.owl sorbose metabolism biological_process owl:Class GO:0072020 biolink:NamedThing proximal straight tubule development The process whose specific outcome is the progression of the proximal straight tubule over time, from its formation to the mature structure. The proximal straight tubule is the part of the descending limb that extends from the proximal convoluted tubule to the descending thin tubule. tmpzr1t_l9r_go_relaxed.owl S3 development mah 2010-01-25T02:36:14Z biological_process owl:Class GO:0102978 biolink:NamedThing furaneol oxidoreductase activity Catalysis of the reaction: 4-hydroxy-2,5-dimethylfuran-3-one + NADP <=> 4-hydroxy-5-methyl-2-methylenefuran-3-one + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:39111|MetaCyc:RXN-9563|EC:1.3.1.105 molecular_function owl:Class GO:0010837 biolink:NamedThing regulation of keratinocyte proliferation Any process that modulates the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002384 biolink:NamedThing hepatic immune response An immune response taking place in the liver. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002251 biolink:NamedThing organ or tissue specific immune response An immune response taking place in an organ or tissues such as the liver, brain, mucosa, or nervous system tissues. tmpzr1t_l9r_go_relaxed.owl immune response in organ or tissue biological_process owl:Class GO:0034826 biolink:NamedThing 1,2-dihydroxy-1,2,5,6,7,8-hexyhadronaphthalene dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydroxy-1,2,5,6,7,8-hexahydronaphthalene + NAD+ = 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1170 molecular_function owl:Class GO:0051884 biolink:NamedThing regulation of timing of anagen Any process that modulates the frequency, rate or extent of timing of anagen, the growth phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl regulation of anagen biological_process owl:Class GO:1903790 biolink:NamedThing guanine nucleotide transmembrane transport The process in which a guanyl nucleotide is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl guanyl nucleotide transmembrane transport dph 2015-01-10T13:51:54Z biological_process owl:Class GO:0009051 biolink:NamedThing pentose-phosphate shunt, oxidative branch The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl pentose phosphate shunt, oxidative branch|oxidative pentose phosphate pathway|pentose phosphate pathway, oxidative branch|pentose-phosphate pathway, oxidative branch|oxidative branch, pentose pathway MetaCyc:OXIDATIVEPENT-PWY biological_process owl:Class GO:2000858 biolink:NamedThing regulation of aldosterone secretion Any process that modulates the frequency, rate or extent of aldosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:47:27Z biological_process owl:Class GO:0016843 biolink:NamedThing amine-lyase activity Catalysis of the release of amines by the cleavage of a carbon-nitrogen bond or the reverse reaction with an amine as a substrate. tmpzr1t_l9r_go_relaxed.owl EC:4.3.3.- molecular_function owl:Class GO:0016840 biolink:NamedThing carbon-nitrogen lyase activity Catalysis of the release of ammonia or one of its derivatives, with the formation of a double bond or ring. Enzymes with this activity may catalyze the actual elimination of the ammonia, amine or amide, e.g. CH-CH(-NH-R) = C=CH- + NH2-R. Others, however, catalyze elimination of another component, e.g. water, which is followed by spontaneous reactions that lead to breakage of the C-N bond, e.g. L-serine ammonia-lyase (EC:4.3.1.17), so that the overall reaction is C(-OH)-CH(-NH2) = CH2-CO- + NH3, i.e. an elimination with rearrangement. The sub-subclasses of EC:4.3 are the ammonia-lyases (EC:4.3.1), lyases acting on amides, amidines, etc. (EC:4.3.2), the amine-lyases (EC:4.3.3), and other carbon-nitrogen lyases (EC:4.3.99). tmpzr1t_l9r_go_relaxed.owl other carbon-nitrogen lyase activity EC:4.3.-.- molecular_function owl:Class GO:1904878 biolink:NamedThing negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion transmembrane transport via high voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl downregulation of generation of L-type calcium current|down-regulation of generation of L-type calcium current|negative regulation of generation of L-type calcium current|down regulation of generation of L-type calcium current|inhibition of generation of L-type calcium current sl 2015-12-18T22:30:37Z biological_process owl:Class GO:1903010 biolink:NamedThing regulation of bone development Any process that modulates the frequency, rate or extent of bone development. tmpzr1t_l9r_go_relaxed.owl mr 2014-05-13T22:41:53Z biological_process owl:Class GO:0016213 biolink:NamedThing linoleoyl-CoA desaturase activity Catalysis of the reaction: linoleoyl-CoA + reduced acceptor + O2 = gamma-linolenoyl-CoA + acceptor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl delta6-acyl CoA desaturase activity|linoleate desaturase activity|delta(6)-fatty acyl-CoA desaturase activity|delta(6)-acyl CoA desaturase activity|linoleic acid desaturase activity|delta6-fatty acyl-CoA desaturase activity|long-chain fatty acid delta(6)-desaturase activity|linoleoyl-coenzyme A desaturase activity|fatty acid delta(6)-desaturase activity|delta(6)-desaturase activity|fatty acid 6-desaturase activity|long-chain fatty acid delta6-desaturase activity|delta6-desaturase activity|linoleic desaturase activity|fatty acid delta6-desaturase activity|linoleoyl CoA desaturase activity Reactome:R-HSA-2046099|RHEA:47140|MetaCyc:1.14.19.3-RXN|Reactome:R-HSA-2046084|Reactome:R-HSA-2046096|EC:1.14.19.3|Reactome:R-HSA-2046097 Note that this function was formerly EC:1.14.99.25. molecular_function owl:Class GO:0030399 biolink:NamedThing autophagosome membrane disassembly The controlled breakdown of the membranes of autophagosomes. tmpzr1t_l9r_go_relaxed.owl autophagic membrane catabolism|autophagic membrane degradation|autophagic vacuole membrane disassembly|autophagic membrane breakdown biological_process owl:Class GO:0030775 biolink:NamedThing glucuronoxylan 4-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + glucuronoxylan D-glucuronate = S-adenosyl-L-homocysteine + glucuronoxylan 4-O-methyl-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:glucuronoxylan-D-glucuronate 4-O-methyltransferase activity EC:2.1.1.112|RHEA:20413|MetaCyc:GLUCURONOXYLAN-4-O-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0075319 biolink:NamedThing positive regulation of ascus development Any process that activates, maintains or increases the frequency, rate or extent of ascus development, a saclike structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075318 biolink:NamedThing regulation of ascus development Any process that modulates the frequency, rate or extent of ascus development, a process that leads to the formation of basidium, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033098 biolink:NamedThing amyloplast inner membrane The inner, i.e. lumen-facing, lipid bilayer of the amyloplast envelope; also faces the amyloplast stroma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902121 biolink:NamedThing lithocholic acid binding Binding to lithocholic acid. tmpzr1t_l9r_go_relaxed.owl LCA binding bf 2013-05-15T16:05:12Z molecular_function owl:Class GO:0002520 biolink:NamedThing immune system development The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006397 biolink:NamedThing mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. tmpzr1t_l9r_go_relaxed.owl mRNA maturation biological_process owl:Class GO:0120172 biolink:NamedThing positive regulation of actin filament bundle convergence involved in mitotic contractile ring assembly Any process that activates or increases the frequency, rate or extent of actin filament bundle convergence involved in mitotic contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl krc 2018-05-31T17:54:35Z biological_process owl:Class GO:0032551 biolink:NamedThing pyrimidine ribonucleoside binding Binding to a pyrimidine ribonucleoside, a compound consisting of a pyrimidine base linked to ribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032549 biolink:NamedThing ribonucleoside binding Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051274 biolink:NamedThing beta-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of beta-glucans. tmpzr1t_l9r_go_relaxed.owl beta-glucan anabolism|beta-glucan formation|beta-glucan synthesis|beta-glucan biosynthesis biological_process owl:Class GO:0004159 biolink:NamedThing dihydropyrimidine dehydrogenase (NAD+) activity Catalysis of the reaction: a 5,6-dihydropyrimidine (5,6-dihydrouracil or 5,6-dihydrothymine) + NAD+ = a pyrimidine (uracil or thymine) + NADH + H+. tmpzr1t_l9r_go_relaxed.owl dihydrothymine dehydrogenase (NAD+) activity|uracil reductase activity|5,6-dihydrouracil:NAD+ oxidoreductase activity|dihydrouracil dehydrogenase (NAD+) activity|thymine reductase activity|pyrimidine reductase activity https://github.com/geneontology/go-ontology/issues/21891 EC:1.3.1.1|MetaCyc:DIHYDROURACIL-DEHYDROGENASE-NAD+-RXN molecular_function owl:Class GO:1902068 biolink:NamedThing regulation of sphingolipid mediated signaling pathway Any process that modulates the frequency, rate or extent of sphingolipid signaling. tmpzr1t_l9r_go_relaxed.owl regulation of sphingolipid signaling pathway bf 2013-04-18T13:24:47Z biological_process owl:Class GO:0046211 biolink:NamedThing (+)-camphor biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-camphor, a bicyclic monoterpene ketone. tmpzr1t_l9r_go_relaxed.owl (+)-camphor biosynthesis|(+)-camphor formation|(+)-camphor anabolism|(+)-camphor synthesis biological_process owl:Class GO:0015561 biolink:NamedThing rhamnose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: rhamnose(out) + H+(out) = rhamnose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl rhamnose:hydrogen symporter activity TC:2.A.7.6 molecular_function owl:Class GO:0009679 biolink:NamedThing hexose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexose(out) + H+(out) = hexose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl hexose:hydrogen symporter activity molecular_function owl:Class GO:0097294 biolink:NamedThing 'de novo' XMP biosynthetic process The chemical reactions and pathways resulting in the formation of XMP, xanthosine monophosphate, from simpler precursors. tmpzr1t_l9r_go_relaxed.owl 'de novo' XMP anabolism|'de novo' XMP biosynthesis|'de novo' XMP synthesis|'de novo' XMP formation pr 2012-04-26T09:57:49Z biological_process owl:Class GO:0046355 biolink:NamedThing mannan catabolic process The chemical reactions and pathways resulting in the breakdown of mannan, the main hemicellulose of soft (coniferous) wood, made up of D-mannose, D-glucose and D-galactose. tmpzr1t_l9r_go_relaxed.owl mannan catabolism|mannan degradation|mannan breakdown biological_process owl:Class GO:1901890 biolink:NamedThing positive regulation of cell junction assembly Any process that activates or increases the frequency, rate or extent of cell junction assembly. tmpzr1t_l9r_go_relaxed.owl activation of cell junction assembly|up regulation of cell junction assembly|upregulation of cell junction assembly|up-regulation of cell junction assembly tb 2013-02-06T19:40:46Z biological_process owl:Class GO:0018046 biolink:NamedThing C-terminal peptidyl-methionine amidation The formation of a C-terminal peptidyl-methionine amide by hydrolysis and oxidation of an interior Met-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0093 biological_process owl:Class GO:0018033 biolink:NamedThing protein C-terminal amidation The formation of a C-terminal amide by hydrolysis and oxidation of an interior peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075225 biolink:NamedThing negative regulation of sporangium germination Any process that stops, prevents, or reduces the frequency, rate or extent of sporangium germination. tmpzr1t_l9r_go_relaxed.owl negative regulation of sporangium germination on or near host biological_process owl:Class GO:0075223 biolink:NamedThing regulation of sporangium germination Any process that modulates the frequency, rate or extent of sporangium germination. tmpzr1t_l9r_go_relaxed.owl modulation of sporangium germination on or near host|modulation of sporangium germination biological_process owl:Class GO:0004549 biolink:NamedThing tRNA-specific ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in tRNA molecules. tmpzr1t_l9r_go_relaxed.owl tRNA-specific RNase activity Reactome:R-HSA-6785722|Reactome:R-HSA-5696813|Reactome:R-HSA-5696815|Reactome:R-HSA-6786854 molecular_function owl:Class GO:0031170 biolink:NamedThing ferricrocin metabolic process The chemical reactions and pathways involving ferricrocin, a cyclic hexapeptide siderophore with the structure Gly-Ser-Gly-(N5-acetyl-N5-hydroxyornithine)3. tmpzr1t_l9r_go_relaxed.owl ferricrocin metabolism biological_process owl:Class GO:0031168 biolink:NamedThing ferrichrome metabolic process The chemical reactions and pathways involving a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine. tmpzr1t_l9r_go_relaxed.owl ferrichrome metabolism biological_process owl:Class GO:0070108 biolink:NamedThing negative regulation of interleukin-27-mediated signaling pathway Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of IL-27-mediated signaling pathway|negative regulation of IL27RA/IL6ST signaling pathway|negative regulation of interleukin-27-mediated signalling pathway biological_process owl:Class GO:0042373 biolink:NamedThing vitamin K metabolic process The chemical reactions and pathways involving any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. Vitamin K substances share a methylated naphthoquinone ring structure and vary in the aliphatic side chains attached to the molecule. tmpzr1t_l9r_go_relaxed.owl naphthoquinone metabolism|naphthoquinone metabolic process|vitamin K metabolism biological_process owl:Class GO:0031915 biolink:NamedThing positive regulation of synaptic plasticity A process that increases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers. tmpzr1t_l9r_go_relaxed.owl up regulation of synaptic plasticity|up-regulation of synaptic plasticity|stimulation of synaptic plasticity|activation of synaptic plasticity|upregulation of synaptic plasticity biological_process owl:Class GO:0120016 biolink:NamedThing sphingolipid transfer activity Removes a sphingolipid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl sphingolipid carrier activity|intermembrane sphingolipid transfer activity https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T03:52:30Z molecular_function owl:Class GO:0003344 biolink:NamedThing pericardium morphogenesis The process in which the anatomical structure of the pericardium is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T10:46:34Z biological_process owl:Class GO:0052321 biolink:NamedThing negative regulation of phytoalexin metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of phytoalexin metabolism, the chemical reactions and pathways involving phytoalexins. tmpzr1t_l9r_go_relaxed.owl down regulation of phytoalexin metabolism|inhibition of phytoalexin metabolism|down-regulation of phytoalexin metabolism|negative regulation of phytoalexin metabolism|downregulation of phytoalexin metabolism biological_process owl:Class GO:0046376 biolink:NamedThing GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process The chemical reactions and pathways involving GDP-alpha-D-mannosylchitobiosyldiphosphodolichol, a substance composed of mannosylchitobiosyldiphosphodolichol in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolism biological_process owl:Class GO:0008093 biolink:NamedThing cytoskeletal anchor activity The binding activity of a protein that brings together a cytoskeletal protein (either a microtubule or actin filament, spindle pole body, or protein directly bound to them) and one or more other molecules, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl cytoskeletal adaptor activity https://github.com/geneontology/go-ontology/issues/19119|https://github.com/geneontology/go-ontology/issues/17668 molecular_function owl:Class GO:0005334 biolink:NamedThing norepinephrine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: norepinephrine(out) + Na+(out) + Cl-(out) = norepinephrine(in) + Na+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl levarterenol transporter activity|norepinephrine transmembrane transporter activity|noradrenaline transporter activity|sodium/norepinephrine symporter activity|norepinephrine:sodium:chloride symporter activity Reactome:R-HSA-5659764|Reactome:R-HSA-443997|Wikipedia:Norepinephrine_transporter GO:0005333 molecular_function owl:Class GO:0061160 biolink:NamedThing regulation of establishment of bipolar cell polarity regulating cell shape Any process that modulates the rate, frequency or extent of the establishment of bipolar cell polarity that contributes to the shape of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-23T09:21:36Z biological_process owl:Class GO:0031591 biolink:NamedThing wybutosine biosynthetic process The chemical reactions and pathways resulting in the formation of wybutosine, 3H-imidazo[1,2-alpha]purine-7-butanoic acid, 4,9-dihydro- alpha-[(methoxycarbonyl)amino]- 4,6-dimethyl-9-oxo- 3-beta-D-ribofuranosyl methyl ester, a modified nucleoside found in some tRNA molecules. tmpzr1t_l9r_go_relaxed.owl yW biosynthesis|yW biosynthetic process Note that wybutosine is a hypermodified G-residue, formerly called the Y-base, and its derivatives are exclusively found at position 37 (anticodon loop) of tRNAPhe. biological_process owl:Class GO:1901659 biolink:NamedThing glycosyl compound biosynthetic process The chemical reactions and pathways resulting in the formation of glycosyl compound. tmpzr1t_l9r_go_relaxed.owl glycosyl compound anabolism|glycosyl compound synthesis|glycosyl compound biosynthesis|glycosyl compound formation pr 2012-11-20T14:24:19Z biological_process owl:Class GO:0042068 biolink:NamedThing regulation of pteridine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving pteridine. tmpzr1t_l9r_go_relaxed.owl regulation of pteridine metabolism biological_process owl:Class GO:0045777 biolink:NamedThing positive regulation of blood pressure Any process in which the force of blood traveling through the circulatory system is increased. tmpzr1t_l9r_go_relaxed.owl stimulation of blood pressure|up regulation of blood pressure|upregulation of blood pressure|activation of blood pressure|up-regulation of blood pressure biological_process owl:Class GO:0032554 biolink:NamedThing purine deoxyribonucleotide binding Binding to a purine deoxyribonucleotide, any compound consisting of a purine deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046426 biolink:NamedThing negative regulation of receptor signaling pathway via JAK-STAT Any process that stops, prevents, or reduces the frequency, rate or extent of a receptor signaling pathway via JAK-STAT. tmpzr1t_l9r_go_relaxed.owl negative regulation of STAT protein nuclear translocation|downregulation of JAK-STAT cascade|negative regulation of STAT protein import into nucleus|down-regulation of JAK-STAT cascade|down regulation of JAK-STAT cascade|inhibition of JAK-STAT cascade GO:2000365 biological_process owl:Class GO:1904893 biolink:NamedThing negative regulation of receptor signaling pathway via STAT Any process that stops, prevents or reduces the frequency, rate or extent of receptor signaling via STAT. tmpzr1t_l9r_go_relaxed.owl inhibition of kinase-STAT cascade|down regulation of kinase activated-STAT cascade|inhibition of STAT signalling pathway|downregulation of STAT signalling pathway|downregulation of kinase-STAT cascade|down-regulation of kinase-STAT cascade|down regulation of STAT cascade|down regulation of kinase-STAT cascade|inhibition of STAT cascade|down regulation of STAT signalling pathway|negative regulation of STAT signalling pathway|down-regulation of STAT cascade|down-regulation of STAT signalling pathway|down-regulation of kinase activated-STAT cascade|downregulation of kinase activated-STAT cascade|negative regulation of kinase activated-STAT cascade|inhibition of kinase activated-STAT cascade|negative regulation of kinase-STAT cascade|downregulation of STAT cascade pr 2016-01-08T08:14:41Z biological_process owl:Class GO:0106019 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate phosphatase activity Catalysis of the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-10T14:22:12Z molecular_function owl:Class GO:0034593 biolink:NamedThing phosphatidylinositol bisphosphate phosphatase activity Catalysis of the reaction: phosphatidylinositol bisphosphate + H2O = phosphatidylinositol phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl triphosphoinositide phosphomonoesterase activity|diphosphoinositide phosphatase activity|phosphatidylinositol-bisphosphatase activity|phosphatidyl-inositol-bisphosphate phosphatase activity|triphosphoinositide phosphatase activity molecular_function owl:Class GO:0043108 biolink:NamedThing pilus retraction The process of withdrawing a pilus back into a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048562 biolink:NamedThing embryonic organ morphogenesis Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046724 biolink:NamedThing oxalic acid secretion The controlled release of oxalic acid, ethanedioic acid, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl oxalate secretion biological_process owl:Class GO:0060619 biolink:NamedThing cell migration involved in mammary placode formation The orderly movement of epithelial cells within the mammary line that contributes to the formation of the mammary placode. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T09:41:49Z biological_process owl:Class GO:1903751 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl down regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down-regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|negative regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|down-regulation of H2O2-induced intrinsic apoptotic signaling pathway|down regulation of intrinsic apoptotic signaling pathway in response to H2O2|inhibition of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|downregulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|downregulation of intrinsic apoptotic signaling pathway in response to H2O2|negative regulation of intrinsic apoptotic signaling pathway in response to H2O2|down regulation of H2O2-induced intrinsic apoptotic signaling pathway|downregulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|down-regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down-regulation of intrinsic apoptotic signaling pathway in response to H2O2|downregulation of H2O2-induced intrinsic apoptotic signaling pathway|inhibition of H2O2-induced intrinsic apoptotic signaling pathway|inhibition of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|inhibition of intrinsic apoptotic signaling pathway in response to H2O2|negative regulation of H2O2-induced intrinsic apoptotic signaling pathway krc 2014-12-12T23:04:37Z biological_process owl:Class GO:2000368 biolink:NamedThing positive regulation of acrosomal vesicle exocytosis Any process that activates or increases the frequency, rate or extent of acrosomal vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of acrosome exocytosis|positive regulation of acrosomal granule exocytosis yaf 2011-02-07T11:52:42Z biological_process owl:Class GO:0042357 biolink:NamedThing thiamine diphosphate metabolic process The chemical reactions and pathways involving thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. tmpzr1t_l9r_go_relaxed.owl thiamine diphosphate metabolism|thiamin pyrophosphate metabolic process|thiamine pyrophosphate metabolic process|thiamin pyrophosphate metabolism|TPP metabolism|thiamine pyrophosphate metabolism|thiamin diphosphate metabolism|TPP metabolic process|thiamin diphosphate metabolic process biological_process owl:Class GO:0045947 biolink:NamedThing negative regulation of translational initiation Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation. tmpzr1t_l9r_go_relaxed.owl down regulation of translational initiation|inhibition of translational initiation|downregulation of translational initiation|down-regulation of translational initiation biological_process owl:Class GO:0019035 biolink:NamedThing viral integration complex A nucleoprotein complex containing viral genetic material and the viral integrase, required for genome integration into the host's genome. May contain other proteins. tmpzr1t_l9r_go_relaxed.owl PIC|pre-integration complex https://github.com/geneontology/go-ontology/issues/19806 Wikipedia:Pre-integration_complex cellular_component owl:Class GO:0015389 biolink:NamedThing pyrimidine- and adenine-specific:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (pyrimidine nucleoside or adenine)(out) + Na+(out) = (pyrimidine nucleoside or adenine)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005415 biolink:NamedThing nucleoside:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium-dependent nucleoside transporter activity|nucleoside-sodium cotransporter activity Reactome:R-HSA-109539|Reactome:R-HSA-109530|Reactome:R-HSA-109538 GO:0008522 molecular_function owl:Class GO:0010961 biolink:NamedThing cellular magnesium ion homeostasis Any process involved in the maintenance of an internal steady state of magnesium ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-06T11:48:45Z biological_process owl:Class GO:0047528 biolink:NamedThing 2,3-dihydroxyindole 2,3-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxyindole + O(2) = anthranilate + CO(2) + H(+). tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxyindole:oxygen 2,3-oxidoreductase (decyclizing) activity RHEA:19445|MetaCyc:23-DIHYDROXYINDOLE-23-DIOXYGENASE-RXN|EC:1.13.11.23|KEGG_REACTION:R00983 molecular_function owl:Class GO:1990401 biolink:NamedThing embryonic lung development The process occurring during the embryonic phase whose specific outcome is the progression of the lung over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl sl 2014-06-23T19:56:13Z biological_process owl:Class GO:0044599 biolink:NamedThing AP-5 adaptor complex An AP-type membrane coat adaptor complex that in humans consists of beta5, zeta, mu5 and sigma5 subunits and is found associated with membranes in the endosomes; it is not clear whether AP-5 forms clathrin coats in vivo. tmpzr1t_l9r_go_relaxed.owl adaptor protein-5 adaptor complex jl 2012-05-01T03:48:11Z cellular_component owl:Class GO:0097351 biolink:NamedThing toxin sequestering activity Binding to a toxic protein, disabling its function. There may be more than one antitoxin to a toxic protein. Instances of this activity are known only in prokaryotes, where the toxic protein may be a ribonuclease, a DNA gyrase, or other. tmpzr1t_l9r_go_relaxed.owl toxin-antitoxin pair type II binding|toxin-antitoxin pair type I binding pr 2012-06-28T11:41:38Z molecular_function owl:Class GO:1900189 biolink:NamedThing positive regulation of cell adhesion involved in single-species biofilm formation Any process that activates or increases the frequency, rate or extent of cell adhesion involved in single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl up regulation of cell adhesion during single-species biofilm formation|positive regulation of cell adhesion during single-species biofilm formation|up-regulation of cell adhesion during single-species biofilm formation|up regulation of cell adhesion involved in single-species biofilm formation|upregulation of cell adhesion involved in single-species biofilm formation|activation of cell adhesion involved in single-species biofilm formation|activation of cell adhesion during single-species biofilm formation|up-regulation of cell adhesion involved in single-species biofilm formation|upregulation of cell adhesion during single-species biofilm formation di 2012-03-19T12:39:03Z biological_process owl:Class GO:0140501 biolink:NamedThing positive regulation of reticulophagy Any process that increases the frequency, rate or extent of reticulophagy. tmpzr1t_l9r_go_relaxed.owl positive regulation of ER-phagy|positive regulation of endoplasmic reticulum degradation|positive regulation of ER autophagy|positive regulation of autophagy of the endoplasmic reticulum|positive regulation of endoplasmic reticulum autophagy|positive regulation of ER degradation|positive regulation of autophagy of the ER https://github.com/geneontology/go-ontology/issues/19860 pg 2020-08-10T12:01:35Z biological_process owl:Class GO:0140357 biolink:NamedThing heme export from vacuole to cytoplasm The directed movement of heme from inside the vacuole across the vacuolar membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17407 pg 2019-05-28T07:40:48Z biological_process owl:Class GO:0033429 biolink:NamedThing CGU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CGU codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA|CGT codon-amino acid adaptor activity Note that in the standard genetic code, CGT codes for arginine. molecular_function owl:Class GO:0062057 biolink:NamedThing L-aspartate:fumarate antiporter activity Enables the transport of L-aspartate and fumarate across a membrane according to the reaction L-aspartate (out) + fumarate (in) = L-aspartate (in) + fumarate (out). tmpzr1t_l9r_go_relaxed.owl dph 2018-08-09T14:25:45Z molecular_function owl:Class GO:1903381 biolink:NamedThing regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of an endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|regulation of ER stress-induced neuron apoptosis|regulation of endoplasmic reticulum stress-induced neuron apoptosis|regulation of ER stress-induced neuron intrinsic apoptotic signaling pathway bf 2014-08-27T08:45:29Z biological_process owl:Class GO:0050746 biolink:NamedThing regulation of lipoprotein metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl regulation of lipoprotein metabolism biological_process owl:Class GO:0090438 biolink:NamedThing camelliol C synthase activity Catalyzes the reaction: (3S)-2,3-epoxy-2,3-dihydrosqualene = camelliol C. tmpzr1t_l9r_go_relaxed.owl (3S)-2,3-epoxy-2,3-dihydrosqualene mutase (cyclizing, camelliol-C-forming) tb 2012-08-08T15:41:45Z molecular_function owl:Class GO:0052886 biolink:NamedThing 9,9'-dicis-carotene:quinone oxidoreductase activity Catalysis of the reaction: 9,9'-di-cis-zeta-carotene + a quinone = 7,9,9'-tri-cis-neurosporene + a quinol. tmpzr1t_l9r_go_relaxed.owl zeta-carotene desaturase activity|9,9'-di-cis-zeta-carotene desaturase activity|ZDS activity EC:1.3.5.6|RHEA:30959|MetaCyc:RXN-11356|KEGG_REACTION:R09656 molecular_function owl:Class GO:0016635 biolink:NamedThing oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a quinone or related compound. tmpzr1t_l9r_go_relaxed.owl EC:1.3.5.- molecular_function owl:Class GO:0018422 biolink:NamedThing GDP-mannose:serine-protein mannose-1-phosphotransferase activity Catalysis of the transfer of mannose-1-phosphate to a serine residue in a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070896 biolink:NamedThing positive regulation of transposon integration Any process that activates or increases the frequency, rate or extent of transposon integration, a process in which a transposable element is incorporated into another DNA molecule. tmpzr1t_l9r_go_relaxed.owl upregulation of transposon integration|stimulation of transposon integration|activation of transposon integration|up-regulation of transposon integration|up regulation of transposon integration mah 2009-09-01T04:25:06Z biological_process owl:Class GO:0033310 biolink:NamedThing chlorophyll a catabolic process The chemical reactions and pathways leading to the breakdown of chlorophyll a. tmpzr1t_l9r_go_relaxed.owl chlorophyll a catabolism|chlorophyll a breakdown|chlorophyll a degradation MetaCyc:PWY-5098|MetaCyc:PWY-5086 biological_process owl:Class GO:0046131 biolink:NamedThing pyrimidine ribonucleoside metabolic process The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside metabolism biological_process owl:Class GO:0008012 biolink:NamedThing structural constituent of adult chitin-based cuticle The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of an adult organism. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl structural constituent of adult cuticle molecular_function owl:Class GO:0015704 biolink:NamedThing cyanate transport The directed movement of cyanate, NCO-, the anion of cyanic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032697 biolink:NamedThing negative regulation of interleukin-14 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-14 production. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-14 production|negative regulation of IL-14 production|negative regulation of interleukin-14 biosynthetic process|inhibition of interleukin-14 production|downregulation of interleukin-14 production|down regulation of interleukin-14 production GO:0045370 biological_process owl:Class GO:0009170 biolink:NamedThing purine deoxyribonucleoside monophosphate metabolic process The chemical reactions and pathways involving purine deoxyribonucleoside monophosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside monophosphate metabolism biological_process owl:Class GO:0032930 biolink:NamedThing positive regulation of superoxide anion generation Any process that activates or increases the frequency, rate or extent of enzymatic generation of superoxide by a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of superoxide release|up-regulation of superoxide release|positive regulation of superoxide release|upregulation of superoxide release|activation of superoxide release|up regulation of superoxide release biological_process owl:Class GO:0000035 biolink:NamedThing acyl binding Binding to an acyl group, any group formally derived by removal of the hydroxyl group from the acid function of a carboxylic acid. tmpzr1t_l9r_go_relaxed.owl acyl-CoA or acyl binding molecular_function owl:Class GO:1905613 biolink:NamedThing regulation of developmental vegetative growth Any process that modulates the frequency, rate or extent of developmental vegetative growth. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-28T11:45:13Z biological_process owl:Class GO:0015869 biolink:NamedThing protein-DNA complex transport The directed movement of protein-DNA complexes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl DNA-protein complex transport biological_process owl:Class GO:0032489 biolink:NamedThing regulation of Cdc42 protein signal transduction Any process that modulates the frequency, rate or extent of Cdc42 protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000633 biolink:NamedThing positive regulation of pre-miRNA processing Any process that activates or increases the frequency, rate or extent of pre-microRNA processing. tmpzr1t_l9r_go_relaxed.owl positive regulation of pre-microRNA processing dph 2011-04-18T03:50:22Z biological_process owl:Class GO:0005672 biolink:NamedThing transcription factor TFIIA complex A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098980 biolink:NamedThing presynaptic density An electron dense specialization of the presynaptic active zone cytoskeleton. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048788 biolink:NamedThing cytoskeleton of presynaptic active zone The specialized cytoskeletal matrix of the presynaptic active zone. It has specialized functions in organizing synaptic events such as immobilisation or translocation of synaptic vesicles, and assembling active zone components. It is believed to form a molecular scaffold that organizes neurotransmitter release sites. tmpzr1t_l9r_go_relaxed.owl T-bar ribbon|presynaptic cytoskeletal matrix|pre-synaptic ribbon|presynaptic dense body|active zone cytomatrix|ribbon|T-bar|pre-synaptic dense body|CAZ|presynaptic ribbon|presynaptic cytoskeletal matrix assembled at active zones|presynaptic cytomatrix assembled at active zones|synaptic ribbon|pre-synaptic cytoskeletal matrix assembled at active zones NIF_Subcellular:sao1470121605 cellular_component owl:Class GO:0090024 biolink:NamedThing negative regulation of neutrophil chemotaxis Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:13:09Z biological_process owl:Class GO:0044348 biolink:NamedThing plant-type cell wall cellulose catabolic process The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, which forms part of the cell wall. tmpzr1t_l9r_go_relaxed.owl plant-type cell wall polysaccharide breakdown jl 2011-07-28T01:48:23Z biological_process owl:Class GO:0052541 biolink:NamedThing plant-type cell wall cellulose metabolic process The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall cellulose metabolism|cellulose and pectin-containing cell wall cellulose metabolic process biological_process owl:Class GO:0044603 biolink:NamedThing protein adenylylhydrolase activity Catalysis of the reaction: adenylyl-protein+ H2O = adenylate + protein; mediates the removal of an adenylyl (adenosine 5'-monophosphate; AMP group) from specific residues of target proteins. tmpzr1t_l9r_go_relaxed.owl protein deAMPylation activity|protein deAMPylase activity jl 2012-05-01T04:18:07Z molecular_function owl:Class GO:0140421 biolink:NamedThing endocytic heme import into cell The directed movement into cell of externally available heme by receptor-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl heme assimilation https://github.com/geneontology/go-ontology/issues/18671 pg 2020-01-30T13:14:02Z biological_process owl:Class GO:0050075 biolink:NamedThing maleate hydratase activity Catalysis of the reaction: (R)-malate = H(2)O + maleate. tmpzr1t_l9r_go_relaxed.owl malease activity|(R)-malate hydro-lyase activity|D-malate hydro-lyase activity|(R)-malate hydro-lyase (maleate-forming) KEGG_REACTION:R02419|EC:4.2.1.31|RHEA:23692|MetaCyc:MALEATE-HYDRATASE-RXN molecular_function owl:Class GO:0006540 biolink:NamedThing glutamate decarboxylation to succinate The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes. tmpzr1t_l9r_go_relaxed.owl 4-aminobutyrate shunt|glutamate degradation via 4-aminobutyrate|degradation of glutamate to succinate through GABA|glutamate degradation via GABA|GABA shunt|gamma-aminobutyrate shunt MetaCyc:PWY-4321|MetaCyc:GLUDEG-I-PWY|MetaCyc:PWY3O-210 Note that the third step in this pathway (conversion of succinate semialdehyde to succinate) can be catalyzed by NAD-dependent or NADP-dependent succinate semialdehyde dehydrogenase (EC:1.2.1.24 and EC:1.2.1.79, respectively). biological_process owl:Class GO:0006538 biolink:NamedThing glutamate catabolic process The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl glutamic acid catabolic process|glutamate degradation|glutamate deamidation|glutamate catabolism|glutamic acid catabolism|glutamate breakdown GO:0019459 biological_process owl:Class GO:0009290 biolink:NamedThing DNA import into cell involved in transformation The directed movement of DNA into a cell that contributes to the process of transformation, the uptake of foreign genetic material into a cell. tmpzr1t_l9r_go_relaxed.owl cellular DNA uptake|DNA transport into cell during transformation|cellular DNA import during transformation|DNA import into cell biological_process owl:Class GO:0051027 biolink:NamedThing DNA transport The directed movement of RNA, deoxyribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001876 biolink:NamedThing lipoarabinomannan binding Binding to lipoarabinomannan. tmpzr1t_l9r_go_relaxed.owl LAM binding molecular_function owl:Class GO:1901469 biolink:NamedThing regulation of syringal lignin catabolic process Any process that modulates the frequency, rate or extent of syringal lignin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of syringal lignin breakdown|regulation of syringal lignin catabolism|regulation of S-lignin catabolic process|regulation of syringal lignin degradation tt 2012-10-02T14:41:12Z biological_process owl:Class GO:0071440 biolink:NamedThing regulation of histone H3-K14 acetylation Any process that modulates the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3 acetylation at K14|regulation of histone H3K14 acetylation mah 2009-12-16T03:24:53Z biological_process owl:Class GO:1903389 biolink:NamedThing negative regulation of synaptic vesicle uncoating Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle uncoating. tmpzr1t_l9r_go_relaxed.owl downregulation of synaptic vesicle coat depolymerization|inhibition of synaptic vesicle coat protein depolymerization|down regulation of synaptic vesicle coat depolymerization|negative regulation of synaptic vesicle coat protein depolymerization|down-regulation of synaptic vesicle coat protein depolymerization|inhibition of synaptic vesicle uncoating|down regulation of synaptic vesicle uncoating|inhibition of synaptic vesicle coat depolymerization|down regulation of synaptic vesicle coat protein depolymerization|negative regulation of synaptic vesicle coat depolymerization|down-regulation of synaptic vesicle coat depolymerization|downregulation of synaptic vesicle coat protein depolymerization|downregulation of synaptic vesicle uncoating|down-regulation of synaptic vesicle uncoating pad 2014-08-27T10:03:02Z biological_process owl:Class GO:0090597 biolink:NamedThing nematode male tail mating organ morphogenesis The process in which the anatomical structures of the nematode male tail mating organ are generated and organized. The male tail is a sensory organ required for mating and, in C. elegans, consists of ray sensilla, an acellular cuticular fan, a sensory hook, and protracting, copulatory spicules. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-22T13:25:22Z biological_process owl:Class GO:0048808 biolink:NamedThing male genitalia morphogenesis The process in which the anatomical structures of male genitalia are generated and organized. tmpzr1t_l9r_go_relaxed.owl male genital morphogenesis biological_process owl:Class GO:0009081 biolink:NamedThing branched-chain amino acid metabolic process The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. tmpzr1t_l9r_go_relaxed.owl branched chain family amino acid metabolism biological_process owl:Class GO:0033336 biolink:NamedThing caudal fin development The process whose specific outcome is the progression of the caudal fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033338 biolink:NamedThing medial fin development The process whose specific outcome is the progression of a medial fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl median fin development biological_process owl:Class GO:0033858 biolink:NamedThing N-acetylgalactosamine kinase activity Catalysis of the reaction: ATP + N-acetyl-D-galactosamine = ADP + N-acetyl-alpha-D-galactosamine 1-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine (GalNAc)-1-phosphate kinase activity|ATP:N-acetyl-D-galactosamine 1-phosphotransferase activity|GalNAc kinase activity|GK2|GALK2 MetaCyc:2.7.1.157-RXN|RHEA:12617|EC:2.7.1.157 molecular_function owl:Class GO:0010826 biolink:NamedThing negative regulation of centrosome duplication Any process that decreases the frequency, rate or extent of centrosome duplication. Centrosome duplication is the replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010824 biolink:NamedThing regulation of centrosome duplication Any process that modulates the frequency, rate or extent of centrosome duplication. Centrosome duplication is the replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007584 biolink:NamedThing response to nutrient Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus. tmpzr1t_l9r_go_relaxed.owl response to nutrients|nutritional response pathway biological_process owl:Class GO:0031667 biolink:NamedThing response to nutrient levels Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019276 biolink:NamedThing UDP-N-acetylgalactosamine metabolic process The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylgalactosamine metabolism biological_process owl:Class GO:0008203 biolink:NamedThing cholesterol metabolic process The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues. tmpzr1t_l9r_go_relaxed.owl cholesterol metabolism biological_process owl:Class GO:0051425 biolink:NamedThing PTB domain binding Binding to a phosphotyrosine-binding (PTB) Binding to a phosphotyrosine-bindin domain. tmpzr1t_l9r_go_relaxed.owl PID binding|phosphotyrosine-interacting domain binding molecular_function owl:Class GO:0071787 biolink:NamedThing endoplasmic reticulum tubular network formation The aggregation, arrangement and bonding together of a set of components to form the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl ER tubular network assembly|ER tubular network formation|endoplasmic reticulum tubular network assembly mah 2010-09-01T01:54:29Z biological_process owl:Class GO:0032980 biolink:NamedThing keratinocyte activation A change in the morphology or behavior of a keratinocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. Upon activation, keratinocytes become migratory and hyperproliferative, and produce growth factors and cytokines. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060302 biolink:NamedThing negative regulation of cytokine activity Any process that decreases the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072099 biolink:NamedThing anterior/posterior pattern specification involved in ureteric bud development The developmental process that results in the creation of defined areas or spaces within the ureteric bud along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl ureteric bud anterior/posterior pattern formation mah 2010-02-10T02:12:09Z biological_process owl:Class GO:0072098 biolink:NamedThing anterior/posterior pattern specification involved in kidney development The developmental process that results in the creation of defined areas or spaces within the kidney along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl kidney anterior/posterior pattern specification|anterior/posterior pattern formation involved in kidney development|kidney anterior/posterior pattern formation mah 2010-02-10T02:06:24Z biological_process owl:Class GO:0046293 biolink:NamedThing formaldehyde biosynthetic process The chemical reactions and pathways resulting in the formation of formaldehyde (methanal, H2C=O), the simplest aldehyde. tmpzr1t_l9r_go_relaxed.owl methanal biosynthetic process|methanal biosynthesis|formaldehyde anabolism|formaldehyde formation|formaldehyde synthesis|formaldehyde biosynthesis biological_process owl:Class GO:0031442 biolink:NamedThing positive regulation of mRNA 3'-end processing Any process that activates or increases the frequency, rate or extent of mRNA 3'-end processing. tmpzr1t_l9r_go_relaxed.owl up-regulation of mRNA 3'-end processing|activation of mRNA 3'-end processing|stimulation of mRNA 3'-end processing|upregulation of mRNA 3'-end processing|up regulation of mRNA 3'-end processing biological_process owl:Class GO:0050685 biolink:NamedThing positive regulation of mRNA processing Any process that activates or increases the frequency, rate or extent of mRNA processing. tmpzr1t_l9r_go_relaxed.owl stimulation of mRNA processing|up-regulation of mRNA processing|activation of mRNA processing|upregulation of mRNA processing|up regulation of mRNA processing biological_process owl:Class GO:0009998 biolink:NamedThing negative regulation of retinal cone cell fate specification Any process that restricts, stops or prevents a cell from specifying into a retinal cone cell. tmpzr1t_l9r_go_relaxed.owl suppression of retinal cone cell fate|down regulation of retinal cone cell fate specification|down-regulation of retinal cone cell fate specification|suppression of retina cone cell fate|negative regulation of retina cone cell fate specification|downregulation of retinal cone cell fate specification|inhibition of retinal cone cell fate specification biological_process owl:Class GO:0018693 biolink:NamedThing ethylbenzene hydroxylase activity Catalysis of the reaction: A + ethylbenzene + H(2)O = (S)-1-phenylethanol + AH(2). tmpzr1t_l9r_go_relaxed.owl ethylbenzene:(acceptor) oxidoreductase activity|ethylbenzene dehydrogenase activity RHEA:17897|UM-BBD_reactionID:r0234|MetaCyc:RXN-1301|KEGG_REACTION:R05745|EC:1.17.99.2 molecular_function owl:Class GO:0010555 biolink:NamedThing response to mannitol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannitol stimulus. tmpzr1t_l9r_go_relaxed.owl response to mannitol stimulus biological_process owl:Class GO:2001019 biolink:NamedThing positive regulation of retrograde axon cargo transport Any process that activates or increases the frequency, rate or extent of retrograde axon cargo transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of retrograde axonal transport kmv 2011-08-11T09:44:49Z biological_process owl:Class GO:0106280 biolink:NamedThing positive regulation of UDP-N-acetylglucosamine biosynthetic process Any process that activates or increases the frequency, rate or extent of the UDP-N-acetylglucosamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of UDP-GlcNAc biosynthetic process|positive regulation of UDP-N-acetylglucosamine biosynthesis|positive regulation of UDP-N-acetylglucosamine anabolism|positive regulation of UDP-N-acetylglucosamine synthesis|positive egulation of UDP-N-acetylglucosamine formation hjd 2020-07-09T18:12:08Z biological_process owl:Class GO:0085019 biolink:NamedThing formation of tubovesicular network for nutrient acquisition The assembly of a symbiont-induced complex organelle that comprises of multiple protein and lipid domains for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation of a symbiont- induced tubovesicular network for nutrient acquisition from host|formation by symbiont of a tubovesicular network for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 jl 2010-05-20T04:29:24Z biological_process owl:Class GO:0052093 biolink:NamedThing formation of specialized structure for nutrient acquisition The assembly of a symbiotic cellular or anatomical structure for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation by symbiont of specialized structure for nutrient acquisition from host|formation by organism of specialized structure for nutrient acquisition from host|formation of specialized structure for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 biological_process owl:Class GO:0039624 biolink:NamedThing viral outer capsid The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions. tmpzr1t_l9r_go_relaxed.owl outer capsid bf 2012-07-18T04:03:16Z cellular_component owl:Class GO:0044056 biolink:NamedThing modulation by symbiont of host digestive system process The alteration by a symbiont organism of the functioning of a digestive system process, a physical, chemical, or biochemical process carried out by the host organism to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host digestive system process biological_process owl:Class GO:0035118 biolink:NamedThing embryonic pectoral fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the pectoral fin are generated and organized. Pectoral fins are bilaterally paired fins mounted laterally and located behind the gill covers of fish. These fins are used for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035113 biolink:NamedThing embryonic appendage morphogenesis The process, occurring in the embryo, by which the anatomical structures of the appendage are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019732 biolink:NamedThing antifungal humoral response An immune response against a fungus mediated through a body fluid. An example of this process is the antifungal humoral response in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl GO:0006966|GO:0019734 biological_process owl:Class GO:0016002 biolink:NamedThing sulfite reductase activity Catalysis of the reaction: hydrogen sulfide + acceptor + 3 H2O = sulfite + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl assimilatory-type sulfite reductase activity|siroheme sulfite reductase activity|sulphite reductase activity|hydrogen-sulfide:acceptor oxidoreductase activity|hydrogen-sulfide:(acceptor) oxidoreductase activity|assimilatory sulfite reductase activity MetaCyc:SULFITE-REDUCTASE-RXN molecular_function owl:Class GO:0022885 biolink:NamedThing bacteriocin transmembrane transporter activity Enables the transfer of a bacteriocin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102678 biolink:NamedThing 22-alpha-hydroxy-campest-4-en-3-one,NADPH:steroid 5alpha-reductase activity Catalysis of the reaction: (5alpha,22S,24R)-22-hydroxyergostan-3-one + NADP <=> H+ + (22S)-22-hydroxycampest-4-en-3-one + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4229 molecular_function owl:Class GO:2000844 biolink:NamedThing negative regulation of testosterone secretion Any process that stops, prevents or reduces the frequency, rate or extent of testosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:42:33Z biological_process owl:Class GO:0052764 biolink:NamedThing exo-oligoalginate lyase activity Catalysis of the cleavage of glycosidic bonds through a beta-elimination reaction on alginate, a linear polysaccharide consisting of guluronate (G) and mannuronate (M) as the monomer constituents. An oligoalginate is a linear polymer of two, three or four units of (1->4)-alpha-L-guluronic acid and beta-D-mannuronic acid, releasing monosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. tmpzr1t_l9r_go_relaxed.owl EC:4.2.2.26 ai 2011-09-29T04:05:44Z molecular_function owl:Class GO:0075330 biolink:NamedThing positive regulation of arbuscule formation for nutrient acquisition from host Any process that activates or increases the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0060299 biolink:NamedThing negative regulation of sarcomere organization Any process that decreases the rate, frequency or extent of myofibril assembly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs. tmpzr1t_l9r_go_relaxed.owl negative regulation of sarcomere organisation biological_process owl:Class GO:1905792 biolink:NamedThing positive regulation of mechanosensory behavior Any process that activates or increases the frequency, rate or extent of mechanosensory behavior. tmpzr1t_l9r_go_relaxed.owl upregulation of mechanosensory behaviour|up-regulation of mechanosensory behaviour|activation of mechanosensory behaviour|up regulation of mechanosensory behavior|upregulation of behavioral response to mechanical stimulus|positive regulation of behavioral response to mechanical stimulus|up regulation of behavioral response to mechanical stimulus|upregulation of behavioural response to mechanical stimulus|activation of behavioural response to mechanical stimulus|upregulation of mechanosensory behavior|positive regulation of mechanosensory behaviour|activation of behavioral response to mechanical stimulus|activation of mechanosensory behavior|positive regulation of behavioural response to mechanical stimulus|up regulation of mechanosensory behaviour|up-regulation of behavioural response to mechanical stimulus|up-regulation of behavioral response to mechanical stimulus|up-regulation of mechanosensory behavior|up regulation of behavioural response to mechanical stimulus hbye 2017-01-09T15:17:24Z biological_process owl:Class GO:0043981 biolink:NamedThing histone H4-K5 acetylation The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 5 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 acetylation at K5 biological_process owl:Class GO:0043967 biolink:NamedThing histone H4 acetylation The modification of histone H4 by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005436 biolink:NamedThing sodium:phosphate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in). tmpzr1t_l9r_go_relaxed.owl sodium/phosphate symporter activity|sodium-dependent phosphate transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/18577 Reactome:R-HSA-5625123|Reactome:R-HSA-5651697|Reactome:R-HSA-427605|Reactome:R-HSA-2872498|Reactome:R-HSA-427656|Reactome:R-HSA-5687585|Reactome:R-HSA-427645|Reactome:R-HSA-428609|Reactome:R-HSA-5651971|Reactome:R-HSA-5651685 GO:0015321 molecular_function owl:Class GO:0034254 biolink:NamedThing regulation of urea catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of urea. tmpzr1t_l9r_go_relaxed.owl regulation of urea breakdown|regulation of urea degradation|regulation of urea catabolism biological_process owl:Class GO:0071492 biolink:NamedThing cellular response to UV-A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 315 to 400 nm. tmpzr1t_l9r_go_relaxed.owl cellular response to UVA radiation stimulus|cellular response to UVA light stimulus|cellular response to UV-A radiation stimulus|cellular response to UV-A light stimulus mah 2009-12-18T02:21:51Z biological_process owl:Class GO:0034644 biolink:NamedThing cellular response to UV Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. tmpzr1t_l9r_go_relaxed.owl cellular response to UV radiation stimulus|cellular response to ultraviolet light stimulus|cellular response to UV light stimulus|cellular response to ultraviolet radiation stimulus biological_process owl:Class GO:0019758 biolink:NamedThing glycosinolate biosynthetic process The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl glycosinolate formation|glycosinolate biosynthesis|glycosinolate synthesis|glycosinolate anabolism biological_process owl:Class GO:0019757 biolink:NamedThing glycosinolate metabolic process The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl glycosinolate metabolism biological_process owl:Class GO:2001232 biolink:NamedThing positive regulation of protein localization to prospore membrane Any process that activates or increases the frequency, rate or extent of protein localization to prospore membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein-prospore membrane targeting|positive regulation of protein targeting to forespore membrane|positive regulation of protein targeting to prospore membrane|positive regulation of protein localisation to prospore membrane|positive regulation of protein targeting to ascospore-type prospore membrane|positive regulation of protein targeting to FSM mah 2011-11-21T04:13:36Z biological_process owl:Class GO:0097308 biolink:NamedThing cellular response to farnesol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a farnesol stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-15T03:54:01Z biological_process owl:Class GO:0019219 biolink:NamedThing regulation of nucleobase-containing compound metabolic process Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism|regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process biological_process owl:Class GO:1901994 biolink:NamedThing negative regulation of meiotic cell cycle phase transition Any process that stops, prevents or reduces the frequency, rate or extent of meiotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell cycle transition|downregulation of cell cycle transition|downregulation of meiotic cell cycle phase transition|inhibition of meiotic cell cycle phase transition|down-regulation of cell cycle transition|down regulation of cell cycle transition|inhibition of cell cycle transition|down regulation of meiotic cell cycle phase transition|down-regulation of meiotic cell cycle phase transition jl 2013-03-19T16:15:03Z biological_process owl:Class GO:1901993 biolink:NamedThing regulation of meiotic cell cycle phase transition Any process that modulates the frequency, rate or extent of meiotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl regulation of cell cycle transition|meiotic cell cycle control jl 2013-03-19T16:14:58Z biological_process owl:Class GO:0034770 biolink:NamedThing histone H4-K20 methylation The modification of histone H4 by addition of one or more methyl groups to lysine at position 20 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 K20 methylation|histone lysine H4 K20 methylation|histone H4K20me biological_process owl:Class GO:0060732 biolink:NamedThing positive regulation of inositol phosphate biosynthetic process Any process that increases the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T01:58:23Z biological_process owl:Class GO:0009418 biolink:NamedThing pilus shaft The long, slender, mid section of a pilus. tmpzr1t_l9r_go_relaxed.owl fimbrial shaft cellular_component owl:Class GO:0036108 biolink:NamedThing 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate, a precursor of 4-amino-4-deoxy-L-arabinose (L-Ara4N). tmpzr1t_l9r_go_relaxed.owl 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate formation|4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate anabolism|4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate synthesis|undecaprenyl phosphate alpha-L-Ara4N biosynthesis|4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthesis bf 2012-02-06T02:58:03Z biological_process owl:Class GO:0035000 biolink:NamedThing oligosaccharyltransferase III complex An oligosaccharyltransferase (OST) complex that contains the seven polypeptides found in OST complex I, plus heterotrimeric Sec61alpha-beta-gamma and the tetrameric TRAP complex. Of the three forms of mammalian OST complexes identified, the OSTIII complex has the strongest affinity for ribosomes. tmpzr1t_l9r_go_relaxed.owl OSTCIII cellular_component owl:Class GO:0071081 biolink:NamedThing alpha3-beta1 integrin-CD63 complex A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD63. tmpzr1t_l9r_go_relaxed.owl ITGA3-ITGB1-CD63 complex mah 2009-11-06T04:43:43Z cellular_component owl:Class GO:0098678 biolink:NamedThing viral tropism switching A process by which the range of hosts which a virus can bind and infect is changed. Examples include phages that switch between types of fibers via the action of a virally encoded invertase. tmpzr1t_l9r_go_relaxed.owl VZ:4498 dos 2017-01-19T13:05:51Z biological_process owl:Class GO:0047385 biolink:NamedThing [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]-phosphatase activity Catalysis of the reaction: H2O + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] phosphate = phosphate + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]. tmpzr1t_l9r_go_relaxed.owl branched-chain oxo-acid dehydrogenase phosphatase activity|branched-chain 2-keto acid dehydrogenase phosphatase activity|3-methyl-2-oxobutanoate dehydrogenase (lipoamide)-phosphatase activity|3-methyl-2-oxobutanoate dehydrogenase (lipoamide)-phosphate phosphohydrolase activity|branched-chain alpha-keto acid dehydrogenase phosphatase MetaCyc:3.1.3.52-RXN|EC:3.1.3.52 molecular_function owl:Class GO:0030391 biolink:NamedThing fructosamine biosynthetic process The chemical reactions and pathways resulting in the formation of fructosamine, a fructose molecule containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl fructosamine synthesis|fructosamine anabolism|fructosamine biosynthesis|fructosamine formation biological_process owl:Class GO:0070703 biolink:NamedThing outer mucus layer The outer of two mucus layers secreted by epithelial cells in the colon; the outer mucus layer is loosely packed and can be colonized by bacteria. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-08T02:44:51Z cellular_component owl:Class GO:0070701 biolink:NamedThing mucus layer An extracellular region part that consists of a protective layer of mucus secreted by epithelial cells lining tubular organs of the body such as the colon or secreted into fluids such as saliva. Mucus is a viscous slimy secretion consisting of mucins (i.e. highly glycosylated mucin proteins) and various inorganic salts dissolved in water, with suspended epithelial cells and leukocytes. tmpzr1t_l9r_go_relaxed.owl mucous layer|mucous|extracellular proteinaceous gel|mucus mah 2009-06-08T02:31:34Z cellular_component owl:Class GO:0044617 biolink:NamedThing modulation of relaxation of smooth muscle in other organism The process in which an organism effects a change in the relaxation of smooth muscle in a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of relaxation of smooth muscle in other organism jl 2012-07-04T01:55:37Z biological_process owl:Class GO:1901080 biolink:NamedThing regulation of relaxation of smooth muscle Any process that modulates the frequency, rate or extent of relaxation of smooth muscle. tmpzr1t_l9r_go_relaxed.owl regulation of smooth muscle relaxation jl 2012-07-04T10:45:09Z biological_process owl:Class GO:0031592 biolink:NamedThing centrosomal corona An amorphous structure surrounding the core of the centrosome, from which microtubules are nucleated; contains gamma-tubulin. tmpzr1t_l9r_go_relaxed.owl Note that the centrosomal corona has been observed in Dictyostelium, and is the functional equivalent of pericentriolar material. cellular_component owl:Class GO:2000208 biolink:NamedThing positive regulation of ribosomal small subunit export from nucleus Any process that activates or increases the frequency, rate or extent of ribosomal small subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of 40S ribosomal subunit export from nucleus|positive regulation of ribosomal small subunit transport from nucleus to cytoplasm|positive regulation of 30S ribosomal subunit export from nucleus|positive regulation of ribosomal small subunit export out of nucleus|positive regulation of ribosomal small subunit export from cell nucleus|positive regulation of ribosomal small subunit-nucleus export mah 2010-10-26T10:54:16Z biological_process owl:Class GO:1903879 biolink:NamedThing 11beta-hydroxyprogesterone binding Binding to 11beta-hydroxyprogesterone. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:03:12Z molecular_function owl:Class GO:0034402 biolink:NamedThing recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex The process in which proteins required for 3'-end transcript processing become associated with the RNA polymerase II holoenzyme complex and the 3' end of a transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903729 biolink:NamedThing regulation of plasma membrane organization Any process that modulates the frequency, rate or extent of plasma membrane organization. tmpzr1t_l9r_go_relaxed.owl regulation of plasma membrane organisation|regulation of plasma membrane organization and biogenesis al 2014-12-10T18:59:44Z biological_process owl:Class GO:0006338 biolink:NamedThing chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. tmpzr1t_l9r_go_relaxed.owl ATP-dependent chromatin remodelling|chromatin remodelling|ATP-dependent chromatin remodeling|chromatin modeling|chromatin modelling https://github.com/geneontology/go-ontology/issues/21732 GO:0043044 biological_process owl:Class GO:0035962 biolink:NamedThing response to interleukin-13 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-13 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-13 bf 2011-08-01T11:29:02Z biological_process owl:Class GO:0090208 biolink:NamedThing positive regulation of triglyceride metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-23T10:35:06Z biological_process owl:Class GO:0002011 biolink:NamedThing morphogenesis of an epithelial sheet The process in which the anatomical structures of an epithelial sheet are generated and organized. An epithelial sheet is a flat surface consisting of closely packed epithelial cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061968 biolink:NamedThing maintenance of left/right asymmetry The organization process that preserves the asymmetry in an organism's body plan or part of an organism with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T16:38:47Z biological_process owl:Class GO:0006719 biolink:NamedThing juvenile hormone catabolic process The chemical reactions and pathways resulting in the breakdown of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. tmpzr1t_l9r_go_relaxed.owl juvenile hormone breakdown|juvenile hormone catabolism|juvenile hormone degradation biological_process owl:Class GO:0046225 biolink:NamedThing bacteriocin catabolic process The chemical reactions and pathways resulting in the breakdown of a bacteriocin, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary. tmpzr1t_l9r_go_relaxed.owl bacteriocin catabolism|bacteriocin breakdown|bacteriocin degradation biological_process owl:Class GO:0030652 biolink:NamedThing peptide antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of peptides with antibiotic activity. tmpzr1t_l9r_go_relaxed.owl peptide antibiotic breakdown|peptide antibiotic catabolism|peptide antibiotic degradation biological_process owl:Class GO:1901239 biolink:NamedThing malonate(1-) transmembrane transporter activity Enables the transfer of malonate(1-) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl malonic acid uptake transmembrane transporter activity RHEA:33115 al 2012-08-07T15:09:02Z GO:1901549 molecular_function owl:Class GO:0052717 biolink:NamedThing tRNA-specific adenosine-34 deaminase activity Catalysis of the reaction: adenosine-34 + H2O = inosine-34 + NH3, in a tRNA-Ala molecule. tmpzr1t_l9r_go_relaxed.owl tRNA(Ala)-A34 deaminase activity ai 2011-08-12T11:48:54Z molecular_function owl:Class GO:0008251 biolink:NamedThing tRNA-specific adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl tRNA-adenosine deaminase activity Reactome:R-HSA-6782311|Reactome:R-HSA-6782336 molecular_function owl:Class GO:0031679 biolink:NamedThing NADH dehydrogenase (plastoquinone) activity Catalysis of the reaction: NADH + H+ + plastoquinone = NAD+ + plastoquinol. tmpzr1t_l9r_go_relaxed.owl NADH:plastoquinone reductase activity GO:0030024 molecular_function owl:Class GO:0003071 biolink:NamedThing renal system process involved in regulation of systemic arterial blood pressure Renal process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure. tmpzr1t_l9r_go_relaxed.owl renal control of blood pressure|renal regulation of systemic arterial blood pressure biological_process owl:Class GO:0099143 biolink:NamedThing presynaptic actin cytoskeleton The actin cytoskeleton that is part of a presynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-06-09T18:36:19Z cellular_component owl:Class GO:0015629 biolink:NamedThing actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018657 biolink:NamedThing toluene 3-monooxygenase activity Catalysis of the reaction: toluene + 1/2 O2 = 3-hydroxytoluene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:TOLUENE-3-MONOOXYGENASE-RXN|UM-BBD_enzymeID:e0224|EC:1.14.13.- molecular_function owl:Class GO:1904854 biolink:NamedThing proteasome core complex binding Binding to a proteasome core complex. tmpzr1t_l9r_go_relaxed.owl 20S core complex binding|macropain binding|20S proteasome binding|PA28gamma-20S proteasome binding mah 2015-12-15T11:54:19Z molecular_function owl:Class GO:1902910 biolink:NamedThing positive regulation of melanosome transport Any process that activates or increases the frequency, rate or extent of melanosome transport. tmpzr1t_l9r_go_relaxed.owl upregulation of melanosome transport|activation of melanosome transport|up-regulation of melanosome transport|up regulation of melanosome transport als 2014-04-17T11:40:34Z biological_process owl:Class GO:0014707 biolink:NamedThing branchiomeric skeletal muscle development The process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure. The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. Branchiomeric muscles of mammals correspond to the gill musculature of fish. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097238 biolink:NamedThing cellular response to methylglyoxal Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylglyoxal stimulus. Methylglyoxal is a 2-oxoaldehyde derived from propanal. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-02T12:26:35Z biological_process owl:Class GO:0034888 biolink:NamedThing endosulfan monooxygenase I activity Catalysis of the reaction: endosulfan + O2 + 2 H+ + 2 e- = endosulfan sulfate + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1382 molecular_function owl:Class GO:0060394 biolink:NamedThing negative regulation of pathway-restricted SMAD protein phosphorylation Any process that decreases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030486 biolink:NamedThing smooth muscle dense body Electron-dense region associated with a smooth muscle contractile fiber. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047759 biolink:NamedThing butanal dehydrogenase activity Catalysis of the reaction: butanal + CoA + NAD(P)+ = butanoyl-CoA + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl butanal:NAD(P)+ oxidoreductase (CoA-acylating) MetaCyc:BUTANAL-DEHYDROGENASE-RXN|EC:1.2.1.57 molecular_function owl:Class GO:1900561 biolink:NamedThing dehydroaustinol metabolic process The chemical reactions and pathways involving dehydroaustinol. tmpzr1t_l9r_go_relaxed.owl dehydroaustinol metabolism di 2012-05-15T06:27:35Z biological_process owl:Class GO:1903513 biolink:NamedThing endoplasmic reticulum to cytosol transport The directed movement of substances from endoplasmic reticulum to cytosol. tmpzr1t_l9r_go_relaxed.owl ER to cytosol transport rl 2014-10-02T11:24:34Z biological_process owl:Class GO:0060149 biolink:NamedThing negative regulation of posttranscriptional gene silencing Any process that decreases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060147 biolink:NamedThing regulation of posttranscriptional gene silencing Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905055 biolink:NamedThing calcium:cation antiporter activity involved in regulation of presynaptic cytosolic calcium ion concentration Any calcium:cation antiporter activity that is involved in regulation of presynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium ion antiporter activity involved in regulation of presynaptic cytosolic calcium levels dos 2016-03-17T14:35:35Z molecular_function owl:Class GO:0015368 biolink:NamedThing calcium:cation antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + cation(out) = Ca2+(out) + cation(in). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-425822 molecular_function owl:Class GO:0018756 biolink:NamedThing ammeline aminohydrolase activity Catalysis of the reaction: ammeline + H2O = ammelide + NH3. tmpzr1t_l9r_go_relaxed.owl RHEA:26201|MetaCyc:RXN-8016 molecular_function owl:Class GO:0008881 biolink:NamedThing glutamate racemase activity Catalysis of the reaction: L-glutamate = D-glutamate. tmpzr1t_l9r_go_relaxed.owl RHEA:12813|KEGG_REACTION:R00260|MetaCyc:GLUTRACE-RXN|EC:5.1.1.3 molecular_function owl:Class GO:0047661 biolink:NamedThing amino-acid racemase activity Catalysis of the reaction: an L-amino acid = a D-amino acid. tmpzr1t_l9r_go_relaxed.owl L-amino acid racemase activity RHEA:18317|EC:5.1.1.10|MetaCyc:AMINO-ACID-RACEMASE-RXN molecular_function owl:Class GO:0009718 biolink:NamedThing anthocyanin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins. tmpzr1t_l9r_go_relaxed.owl anthocyanin synthesis|anthocyanin biosynthetic process|anthocyanin formation|anthocyanin anabolism|anthocyanin biosynthesis biological_process owl:Class GO:0002757 biolink:NamedThing immune response-activating signal transduction The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately leading to activation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000036 biolink:NamedThing acyl carrier activity Binding an acyl group and presenting it for processing or offloading to a cognate enzyme. Covalently binds the acyl group via a phosphopantetheine prosthetic group and mediates protein-protein interactions with the enzyme conferring specificity. The acyl carrier protein (ACP) presents substrates to enzymes involved in fatty acid biosynthesis or in polyketide secondary metabolite biosynthesis. tmpzr1t_l9r_go_relaxed.owl ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process molecular_function owl:Class GO:0140414 biolink:NamedThing phosphopantetheine-dependent carrier activity Binding a substrate via a thioester at the terminal thiol of a covalentely linked phosphopantetheine prosthetic group and mediating protein-protein interactions with cognate enzymes for processing or offloading of the thiol-bound substrate. tmpzr1t_l9r_go_relaxed.owl carrier protein activity pg 2020-01-14T16:15:04Z molecular_function owl:Class GO:0042929 biolink:NamedThing ferrichrome transmembrane transporter activity Enables the directed movement of a ferrichrome from one side of a membrane to the other. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine. tmpzr1t_l9r_go_relaxed.owl ferrichrome transporter activity molecular_function owl:Class GO:0015603 biolink:NamedThing iron chelate transmembrane transporter activity Enables the transfer of an iron chelate from one side of a membrane to the other. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000501 biolink:NamedThing regulation of natural killer cell chemotaxis Any process that modulates the frequency, rate or extent of natural killer cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-21T10:09:23Z biological_process owl:Class GO:0042850 biolink:NamedThing L-sorbose catabolic process The chemical reactions and pathways resulting in the breakdown of L-sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. tmpzr1t_l9r_go_relaxed.owl L-sorbose breakdown|L-sorbose degradation|L-sorbose catabolism biological_process owl:Class GO:0019312 biolink:NamedThing L-sorbose metabolic process The chemical reactions and pathways involving sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. L-sorbose is formed by bacterial oxidation of sorbitol. tmpzr1t_l9r_go_relaxed.owl L-sorbose metabolism MetaCyc:P302-PWY biological_process owl:Class GO:0051667 biolink:NamedThing establishment of plastid localization The directed movement of a plastid to a specific location in the cell. tmpzr1t_l9r_go_relaxed.owl establishment of plastid localisation biological_process owl:Class GO:0004454 biolink:NamedThing ketohexokinase activity Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:D-fructose 1-phosphotransferase activity|ketohexokinase (phosphorylating)|hepatic fructokinase activity Reactome:R-HSA-5656459|RHEA:18145|EC:2.7.1.3|Reactome:R-HSA-70333|MetaCyc:KETOHEXOKINASE-RXN molecular_function owl:Class GO:0005314 biolink:NamedThing high-affinity glutamate transmembrane transporter activity Enables the transfer of glutamate from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity glutamate transporter activity Reactome:R-HSA-5625015|Reactome:R-HSA-5625029|Reactome:R-HSA-428015|Reactome:R-HSA-210404 molecular_function owl:Class GO:0015501 biolink:NamedThing glutamate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glutamate(out) + Na+(out) = glutamate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/excitatory glutamate cotransporter activity|sodium/excitatory glutamate symporter activity RHEA:29031 GO:0008027 molecular_function owl:Class GO:0014833 biolink:NamedThing skeletal muscle satellite stem cell asymmetric division The asymmetric division of a skeletal muscle satellite stem cell to produce two daughter cells, one of which is destined to differentiate and the other to be a quiescent cell that restocks the satellite cell pool. tmpzr1t_l9r_go_relaxed.owl satellite cell asymmetric division biological_process owl:Class GO:0048103 biolink:NamedThing somatic stem cell division The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line. tmpzr1t_l9r_go_relaxed.owl somatic stem cell renewal biological_process owl:Class GO:1904665 biolink:NamedThing positive regulation of N-terminal peptidyl-methionine acetylation Any process that activates or increases the frequency, rate or extent of N-terminal peptidyl-methionine acetylation. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-07T19:19:02Z biological_process owl:Class GO:0102882 biolink:NamedThing beta-acoradiene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> beta-acoradiene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8423 molecular_function owl:Class GO:1900704 biolink:NamedThing regulation of siderophore biosynthetic process Any process that modulates the frequency, rate or extent of siderophore biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of siderophore synthesis|regulation of siderophore biosynthetic process, peptide formation|regulation of siderophore biosynthetic process, peptide modification|regulation of siderophore formation|regulation of siderochrome biosynthesis|regulation of siderophore biosynthesis|regulation of siderochrome biosynthetic process|regulation of siderophore anabolism di 2012-05-22T04:59:28Z biological_process owl:Class GO:0035430 biolink:NamedThing regulation of gluconate transmembrane transport Any process that modulates the frequency, rate or extent of the directed movement of a gluconate across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of gluconate transport|regulation of gluconate membrane transport bf 2010-04-08T10:37:18Z GO:0032893 biological_process owl:Class GO:0046312 biolink:NamedThing phosphoarginine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphoarginine, a phosphorylated derivative of the amino acid arginine. tmpzr1t_l9r_go_relaxed.owl phosphoarginine formation|phosphoarginine biosynthesis|phosphoarginine synthesis|phosphoarginine anabolism biological_process owl:Class GO:0006604 biolink:NamedThing phosphoarginine metabolic process The chemical reactions and pathways involving phosphoarginine, a phosphagen of L-arginine with phosphoric acid containing the phosphoamide bond. It is a source of energy in the contraction of muscle in invertebrates, corresponding to phosphocreatine in the muscles of vertebrates. tmpzr1t_l9r_go_relaxed.owl phosphoarginine metabolism biological_process owl:Class GO:0070504 biolink:NamedThing selenium-containing prosthetic group biosynthetic process The chemical reactions and pathways resulting in the formation of a prosthetic group that contains selenium, as in the selenium-dependent molybdenum hydroxylases. The selenium atom in the prosthetic group is required for enzymatic function but is labile to a variety of treatments. tmpzr1t_l9r_go_relaxed.owl selenium-containing prosthetic group synthesis|selenium-containing prosthetic group formation|selenium-containing prosthetic group biosynthesis|selenium-containing prosthetic group anabolism biological_process owl:Class GO:0051191 biolink:NamedThing prosthetic group biosynthetic process The chemical reactions and pathways resulting in the formation of a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. tmpzr1t_l9r_go_relaxed.owl prosthetic group formation|prosthetic group biosynthesis|coenzyme and prosthetic group biosynthesis|prosthetic group synthesis|prosthetic group anabolism|coenzyme and prosthetic group biosynthetic process biological_process owl:Class GO:0045344 biolink:NamedThing negative regulation of MHC class I biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class I. tmpzr1t_l9r_go_relaxed.owl negative regulation of MHC class I synthesis|down-regulation of MHC class I biosynthetic process|negative regulation of MHC class I anabolism|downregulation of MHC class I biosynthetic process|negative regulation of MHC class I formation|negative regulation of major histocompatibility complex class I biosynthetic process|negative regulation of MHC class I biosynthesis|down regulation of MHC class I biosynthetic process|inhibition of MHC class I biosynthetic process|negative regulation of major histocompatibility complex class I biosynthesis biological_process owl:Class GO:0035089 biolink:NamedThing establishment of apical/basal cell polarity The specification and formation of the polarity of a cell along its apical/basal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061162 biolink:NamedThing establishment of monopolar cell polarity The specification and formation of monopolar intracellular organization or cell growth patterns. Monopolar cell organization is directional organization along an axis. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-23T09:30:59Z biological_process owl:Class GO:0019266 biolink:NamedThing asparagine biosynthetic process from oxaloacetate The chemical reactions and pathways resulting in the formation of asparagine from other compounds, including oxaloacetate. tmpzr1t_l9r_go_relaxed.owl asparagine synthesis from oxaloacetate|asparagine anabolism from oxaloacetate|asparagine formation from oxaloacetate MetaCyc:ASPARAGINE-BIOSYNTHESIS biological_process owl:Class GO:0033385 biolink:NamedThing geranylgeranyl diphosphate metabolic process The chemical reactions and pathways involving geranylgeranyl diphosphate, a polyprenol compound involved in the biosynthesis of a variety of terpenoids including chlorophylls, carotenoids, tocopherols, plastoquinones, and the plant hormones gibberellins. tmpzr1t_l9r_go_relaxed.owl geranylgeranyldiphosphate metabolic process|geranylgeranyl diphosphate metabolism biological_process owl:Class GO:0098968 biolink:NamedThing neurotransmitter receptor transport postsynaptic membrane to endosome Vesicle-mediated transport of a neurotransmitter receptor complex from the postsynaptic membrane to the postsynaptic early endosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052846 biolink:NamedThing inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity Catalysis of the reaction: 1,5-bisdiphosphoinositol-1D-myo-inositol 2,3,4,6-tetrakisphosphate + H2O = 1-diphospho-1D-myo-inositol 1,2,3,4,6-pentakisphosphate + phosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10965 ai 2011-12-05T11:02:23Z molecular_function owl:Class GO:0120222 biolink:NamedThing regulation of blastocyst development Any process that modulates the frequency, rate or extent of blastocyst development. tmpzr1t_l9r_go_relaxed.owl krc 2020-02-17T19:59:20Z biological_process owl:Class GO:1900862 biolink:NamedThing negative regulation of cordyol C biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of cordyol C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of cordyol C biosynthetic process|downregulation of cordyol C biosynthetic process|down regulation of cordyol C biosynthetic process di 2012-06-07T01:56:38Z biological_process owl:Class GO:0140164 biolink:NamedThing Golgi transport complex binding Binding to a Golgi transport complex, a multisubunit tethering complex of the CATCHR family. tmpzr1t_l9r_go_relaxed.owl COG complex binding pg 2018-02-08T11:49:38Z molecular_function owl:Class GO:0019292 biolink:NamedThing tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate The chemical reactions and pathways resulting in the formation of tyrosine from other compounds, including chorismate, via the intermediate 4-hydroxyphenylpyruvate. tmpzr1t_l9r_go_relaxed.owl tyrosine synthesis from chorismate via 4-hydroxyphenylpyruvate|tyrosine anabolism from chorismate via 4-hydroxyphenylpyruvate|tyrosine biosynthetic process from chorismate via p-hydroxyphenylpyruvate|tyrosine formation from chorismate via 4-hydroxyphenylpyruvate MetaCyc:TYRSYN biological_process owl:Class GO:0046417 biolink:NamedThing chorismate metabolic process The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl chorismate metabolism biological_process owl:Class GO:1903682 biolink:NamedThing negative regulation of epithelial cell-cell adhesion involved in epithelium migration Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell-cell adhesion involved in epithelium migration. tmpzr1t_l9r_go_relaxed.owl down-regulation of epithelial cell-cell adhesion involved in epithelium migration|down regulation of epithelial cell-cell adhesion involved in epithelium migration|inhibition of epithelial cell-cell adhesion involved in epithelium migration|downregulation of epithelial cell-cell adhesion involved in epithelium migration als 2014-12-01T13:25:14Z biological_process owl:Class GO:1900753 biolink:NamedThing doxorubicin transport The directed movement of a doxorubicin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl doxorubicine transport|(1S,3S)-3-glycoloyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside transport|Adriamycin transport|(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside transport|(8S-cis)-10-((3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-8-(hydroxyacetyl)-1-methoxy-5,12-naphthacenedione transport|doxorubicinum transport|14-hydroxydaunorubicine transport|14-hydroxydaunomycin transport jl 2012-05-29T02:50:43Z biological_process owl:Class GO:0042853 biolink:NamedThing L-alanine catabolic process The chemical reactions and pathways resulting in the breakdown of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-alanine degradation|L-alanine catabolism|L-alanine breakdown biological_process owl:Class GO:0005291 biolink:NamedThing high-affinity L-histidine transmembrane transporter activity Enables the transfer of L-histidine from one side of a membrane to the other. L-histidine is 2-amino-3-(1H-imidazol-4-yl)propanoic acid. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity L-histidine transmembrane transporter activity|high affinity histidine permease activity molecular_function owl:Class GO:0005287 biolink:NamedThing high-affinity basic amino acid transmembrane transporter activity Enables the transfer of basic amino acids from one side of a membrane to the other. Acidic amino acids have a pH above 7. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity basic amino acid transmembrane transporter activity|high-affinity basic amino acid transporter activity molecular_function owl:Class GO:0002154 biolink:NamedThing thyroid hormone mediated signaling pathway A series of molecular signals mediated by the detection of a thyroid hormone. tmpzr1t_l9r_go_relaxed.owl thyroid hormone mediated signalling pathway hjd 2009-11-19T12:36:29Z biological_process owl:Class GO:1902062 biolink:NamedThing betaine aldehyde catabolic process The chemical reactions and pathways resulting in the breakdown of betaine aldehyde. tmpzr1t_l9r_go_relaxed.owl betaine aldehyde degradation|betaine aldehyde catabolism|betaine aldehyde breakdown di 2013-04-16T12:07:12Z biological_process owl:Class GO:0002692 biolink:NamedThing negative regulation of cellular extravasation Any process that stops, prevents, or reduces the frequency, rate, or extent of cellular extravasation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular extravasation|down regulation of cellular extravasation|inhibition of cellular extravasation|downregulation of cellular extravasation biological_process owl:Class GO:0002686 biolink:NamedThing negative regulation of leukocyte migration Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte migration. tmpzr1t_l9r_go_relaxed.owl down-regulation of leukocyte migration|negative regulation of leucocyte migration|inhibition of leukocyte migration|downregulation of leukocyte migration|down regulation of leukocyte migration|negative regulation of immune cell migration biological_process owl:Class GO:1905686 biolink:NamedThing positive regulation of plasma membrane repair Any process that activates or increases the frequency, rate or extent of plasma membrane repair. tmpzr1t_l9r_go_relaxed.owl activation of plasma membrane repair|upregulation of plasma membrane repair|up regulation of plasma membrane repair|up-regulation of plasma membrane repair bhm 2016-11-14T10:30:46Z biological_process owl:Class GO:0097516 biolink:NamedThing microvillar actin bundle A parallel bundle of actin filaments at the core of a microvillus. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:12:13Z cellular_component owl:Class GO:0047851 biolink:NamedThing dicarboxylate-CoA ligase activity Catalysis of the reaction: ATP + an omega-dicarboxylic acid + CoASH= AMP + diphosphate + an omega-carboxyacyl-CoA. tmpzr1t_l9r_go_relaxed.owl carboxylyl-CoA synthetase activity|omega-dicarboxylate:CoA ligase (AMP-forming) RHEA:14289|EC:6.2.1.23|MetaCyc:DICARBOXYLATE--COA-LIGASE-RXN molecular_function owl:Class GO:1904947 biolink:NamedThing folate import into mitochondrion The process in which folic acid is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl folic acid import into mitochondrion rph 2016-02-03T12:10:14Z biological_process owl:Class GO:0033750 biolink:NamedThing ribosome localization A process in which a ribosome is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl ribosome localisation|establishment of ribosome localisation|establishment of ribosome localization GO:0033753 biological_process owl:Class GO:0150138 biolink:NamedThing negative regulation of interleukin-37 production Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-37 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-37 biosynthetic process bc 2019-12-08T08:45:29Z biological_process owl:Class GO:0002024 biolink:NamedThing diet induced thermogenesis The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990845 biolink:NamedThing adaptive thermogenesis The regulated production of heat in response to short term environmental changes, such as stress, diet or reduced temperature. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T18:19:49Z biological_process owl:Class GO:0008214 biolink:NamedThing protein dealkylation The removal of an alkyl group from a protein amino acid. Alkyl groups are derived from alkanes by removal of one hydrogen atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid dealkylation biological_process owl:Class GO:1901250 biolink:NamedThing negative regulation of lung goblet cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of lung goblet cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of pulmonary goblet cell differentiation|down regulation of pulmonary goblet cell differentiation|inhibition of lung goblet cell differentiation|down regulation of lung goblet cell differentiation|downregulation of pulmonary goblet cell differentiation|inhibition of pulmonary goblet cell differentiation|negative regulation of pulmonary goblet cell differentiation|down-regulation of lung goblet cell differentiation|downregulation of lung goblet cell differentiation vk 2012-08-08T08:59:36Z biological_process owl:Class GO:0043122 biolink:NamedThing regulation of I-kappaB kinase/NF-kappaB signaling Any process that modulates I-kappaB kinase/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl regulation of I-kappaB kinase/NF-kappaB cascade biological_process owl:Class GO:0106314 biolink:NamedThing nitrite reductase NADPH activity Catalysis of the reaction: ammonium hydroxide + 3 NADP+ + H2O = nitrite + 3 NADPH + 3 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:24632 hjd 2020-09-23T14:28:27Z molecular_function owl:Class GO:0070201 biolink:NamedThing regulation of establishment of protein localization Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of protein localisation biological_process owl:Class GO:0051644 biolink:NamedThing plastid localization Any process in which a plastid is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of plastid localization|plastid localisation biological_process owl:Class GO:1990312 biolink:NamedThing type-II cohesin domain binding Binding to a type-II cohesin domain of a protein. Type-II cohesin domain is the binding partner of type-II dockerin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T04:51:07Z molecular_function owl:Class GO:0035775 biolink:NamedThing pronephric glomerulus morphogenesis The process in which the anatomical structures of the pronephric glomerulus are generated and organized. The pronephric glomerulus is part of the pronephric nephron and is restricted to one body segment. tmpzr1t_l9r_go_relaxed.owl This term is intended for annotation of fish and other organisms which contain a glomerulus as part of the pronephric nephron. It should not be used for annotation of Xenopus, which contains a pronephric glomus rather than a glomerulus. bf 2011-04-04T10:59:28Z biological_process owl:Class GO:0072102 biolink:NamedThing glomerulus morphogenesis The process in which the anatomical structures of the glomerulus are generated and organized. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T02:32:09Z biological_process owl:Class GO:0047024 biolink:NamedThing 5alpha-androstane-3beta,17beta-diol dehydrogenase activity Catalysis of the reaction: 5alpha-androstane-3beta,17beta-diol + NADP(+) = 17beta-hydroxy-5alpha-androstan-3-one + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3beta(or 20alpha)-hydroxysteroid:NADP+ oxidoreductase activity|dehydrogenase, 3beta,20alpha-hydroxy steroid|progesterone reductase activity|3-beta(or 20-alpha)-hydroxysteroid dehydrogenase activity|3beta,20alpha-hydroxysteroid oxidoreductase activity|3-beta-HSD activity|3beta(or 20alpha)-hydroxysteroid dehydrogenase activity RHEA:16297|MetaCyc:1.1.1.210-RXN|KEGG_REACTION:R04344|EC:1.1.1.210 molecular_function owl:Class GO:0048742 biolink:NamedThing regulation of skeletal muscle fiber development Any process that modulates the frequency, rate or extent of skeletal muscle fiber development. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal myofibre development|regulation of skeletal myofiber development|regulation of skeletal muscle fibre development biological_process owl:Class GO:0050312 biolink:NamedThing sulfoacetaldehyde lyase activity Catalysis of the reaction: 2-sulfoacetaldehyde + H2O = acetate + sulfite. tmpzr1t_l9r_go_relaxed.owl sulphoacetaldehyde lyase activity EC:4.4.1.- Note that EC:4.4.1.12 was deleted from EC as the reaction is performed by sulfoacetaldehyde acetyltransferase (EC:2.3.3.15). molecular_function owl:Class GO:0072508 biolink:NamedThing trivalent inorganic cation homeostasis Any process involved in the maintenance of an internal steady state of trivalent cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'di-, tri-valent inorganic cation homeostasis ; GO:0055066' (sibling term 'divalent inorganic cation homeostasis' ; GO:0072507'). mah 2010-12-16T03:26:40Z biological_process owl:Class GO:0033990 biolink:NamedThing ectoine synthase activity Catalysis of the reaction: N(4)-acetyl-L-2,4-diaminobutyrate = ectoine + H(2)O. tmpzr1t_l9r_go_relaxed.owl N-acetyldiaminobutanoate dehydratase activity|EctC|N-acetyldiaminobutyrate dehydratase activity|4-N-acetyl-L-2,4-diaminobutanoate hydro-lyase (L-ectoine-forming) activity|N4-acetyl-L-2,4-diaminobutanoate hydro-lyase (L-ectoine-forming) activity|L-ectoine synthase activity EC:4.2.1.108|RHEA:17281|KEGG_REACTION:R06979|MetaCyc:R103-RXN molecular_function owl:Class GO:0070958 biolink:NamedThing negative regulation of neutrophil mediated killing of gram-positive bacterium Any process that decreases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl inhibition of neutrophil mediated killing of gram-positive bacterium|downregulation of neutrophil mediated killing of gram-positive bacterium|down-regulation of neutrophil mediated killing of gram-positive bacterium|down regulation of neutrophil mediated killing of gram-positive bacterium mah 2009-10-01T02:20:17Z biological_process owl:Class GO:0070956 biolink:NamedThing negative regulation of neutrophil mediated killing of bacterium Any process that decreases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl down-regulation of neutrophil mediated killing of bacterium|down regulation of neutrophil mediated killing of bacterium|inhibition of neutrophil mediated killing of bacterium|downregulation of neutrophil mediated killing of bacterium mah 2009-10-01T02:20:17Z biological_process owl:Class GO:0090483 biolink:NamedThing phosphatidylglycerol-phosphatidylethanolamine phosphatidyltransferase activity Catalysis of the reaction: phosphatidylglycerol + phosphatidylethanolamine = cardiolipin + ethanolamine. tmpzr1t_l9r_go_relaxed.owl cardiolipin synthase tb 2012-10-03T14:20:05Z molecular_function owl:Class GO:0099521 biolink:NamedThing ATPase coupled ion transmembrane transporter activity involved in regulation of presynaptic membrane potential Any ATPase coupled ion transmembrane transporter activity, occurring in the presynaptic membrane, that is involved in regulation of presynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ATPase coupled ion transmembrane transporter activity involved in regulation of pre-synaptic membrane potential|ATPase-coupled ion transmembrane transporter activity involved in regulation of presynaptic membrane potential molecular_function owl:Class GO:0042625 biolink:NamedThing ATPase-coupled ion transmembrane transporter activity Enables the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl ATPase coupled ion transmembrane transporter activity|ATP-dependent ion transmembrane transporter activity|ATPase activity, coupled to transmembrane movement of ions molecular_function owl:Class GO:0044554 biolink:NamedThing modulation of heart rate in other organism Any process that modulates the frequency or rate of heart contraction of another organism. tmpzr1t_l9r_go_relaxed.owl regulation of heart rate in other organism jl 2012-03-29T02:59:43Z biological_process owl:Class GO:0019526 biolink:NamedThing pentitol biosynthetic process The chemical reactions and pathways resulting in the formation of pentitols, any alditol with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentitol synthesis|pentitol anabolism|pentitol biosynthesis|pentitol formation biological_process owl:Class GO:0019519 biolink:NamedThing pentitol metabolic process The chemical reactions and pathways involving pentitols, any alditol with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentitol metabolism biological_process owl:Class GO:0002916 biolink:NamedThing positive regulation of central B cell anergy Any process that activates or increases the frequency, rate, or extent of central B cell anergy. tmpzr1t_l9r_go_relaxed.owl up-regulation of central B cell anergy|upregulation of central B cell anergy|up regulation of central B cell anergy|activation of central B cell anergy|stimulation of central B cell anergy biological_process owl:Class GO:2000646 biolink:NamedThing positive regulation of receptor catabolic process Any process that activates or increases the frequency, rate or extent of receptor catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of receptor catabolism|positive regulation of receptor degradation|positive regulation of receptor breakdown vk 2011-04-21T11:20:25Z biological_process owl:Class GO:0015900 biolink:NamedThing benomyl transport The directed movement of benomyl into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Benomyl, methyl 1-(butylcarbamoyl)-2-benzimidazolecarbamate, is a systemic agricultural fungicide used for control of certain fungal diseases of stone fruit. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030992 biolink:NamedThing intraciliary transport particle B The larger subcomplex of the intraciliary transport particle; characterized complexes have molecular weights around 550 kDa. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport particle B|IFT complex B|IFT B complex|intraflagellar transport complex B Note that we deem cilia and microtubule-based flagella to be equivalent. cellular_component owl:Class GO:0050958 biolink:NamedThing magnetoreception The series of events required for an organism to receive a stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Stimuli may be chemical, mechanical or electrical and interpreting these stimuli allows an organism to determine the orientation of a magnetic field. Magnetoreception also involves the perception of light; birds cannot orient without the presence of short wavelength (blue/green) light. tmpzr1t_l9r_go_relaxed.owl magnetoception|sensory perception of magnetic field Wikipedia:Magnetoception biological_process owl:Class GO:0048629 biolink:NamedThing trichome patterning The regionalization process of establishing the non-random spatial arrangement of trichomes on the surface and margin of a leaf. Process involves signaling between adjacent epidermal cells that results in differentiation of some epidermal cells into trichomes. tmpzr1t_l9r_go_relaxed.owl trichome pattern biosynthesis|trichome pattern specification|trichome spacing|trichome pattern formation|trichome distribution biological_process owl:Class GO:0045168 biolink:NamedThing cell-cell signaling involved in cell fate commitment Signaling at long or short range between cells that results in the commitment of a cell to a certain fate. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling during cell fate commitment|cell fate commitment, cell-cell signalling|cell fate commitment, cell-cell signaling|cell-cell signaling during in cell fate commitment|cell-cell signaling resulting in cell fate commitment|cell-cell signalling involved in cell fate specification|cell-cell signalling resulting in cell fate commitment biological_process owl:Class GO:0030262 biolink:NamedThing apoptotic nuclear changes Alterations undergone by nuclei at the molecular and morphological level as part of the execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl apoptotic nuclear change biological_process owl:Class GO:0045197 biolink:NamedThing establishment or maintenance of epithelial cell apical/basal polarity Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905511 biolink:NamedThing positive regulation of myosin II filament assembly Any process that activates or increases the frequency, rate or extent of myosin II filament assembly. tmpzr1t_l9r_go_relaxed.owl activation of myosin II polymerization|up regulation of myosin II filament assembly|up-regulation of myosin II filament assembly|activation of myosin II filament assembly|up-regulation of myosin II polymerization|upregulation of myosin II filament assembly|upregulation of myosin II polymerization|up regulation of myosin II polymerization|positive regulation of myosin II polymerization positive regulation / down regulation of the formation of a bipolar filament composed of myosin II molecules pf 2016-09-28T13:48:03Z biological_process owl:Class GO:0034422 biolink:NamedThing aleurone grain lumen The volume enclosed by the membrane of an aleurone grain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019638 biolink:NamedThing 6-hydroxycineole metabolic process The chemical reactions and pathways involving 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2. tmpzr1t_l9r_go_relaxed.owl 6-endo-hydroxycineole metabolic process|hydroxycineol metabolism|6-hydroxycineole metabolism|6-endo-hydroxycineole metabolism|hydroxycineol metabolic process biological_process owl:Class GO:0052763 biolink:NamedThing ulvan lyase activity Catalysis of the cleavage of a carbon-oxygen bond in ulvan, a carbohydrate composed of a repeating structure of [->4)-beta-D-GlcA-(1,4)-alpha-L-Rha 3S-(1->4)-alpha-L-IdoA-(1->4)-alpha-L-Rha 3S-(1-]n. Continued digest of ulvan with an enzyme that can catalyze this reaction results in ulvanobiouronic acid A 3-sulfate [->4)-beta-D-GlcpA-(1->4)-alpha-L-Rhap 3-sulfate-(1-]n with 4-deoxy-L-threo-hex-4-enopyranosiduronic acid at the non-reducing end. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-29T03:39:23Z molecular_function owl:Class GO:1905203 biolink:NamedThing regulation of connective tissue replacement Any process that modulates the frequency, rate or extent of connective tissue replacement. tmpzr1t_l9r_go_relaxed.owl bc 2016-05-17T09:54:18Z biological_process owl:Class GO:0052918 biolink:NamedThing dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity Catalysis of the reaction: alpha-D-man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->6))-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl D-mannosyl phosphate = H(+) + alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->6))-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-5469|EC:2.4.1.261|KEGG_REACTION:R06261|RHEA:29539 molecular_function owl:Class GO:0000026 biolink:NamedThing alpha-1,2-mannosyltransferase activity Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->2) linkage. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-4720478|Reactome:R-HSA-9035514|Reactome:R-HSA-4551297|Reactome:R-HSA-446216|Reactome:R-HSA-446187|Reactome:R-HSA-446215 molecular_function owl:Class GO:0019191 biolink:NamedThing cellobiose transmembrane transporter activity Enables the transfer of cellobiose from one side of a membrane to the other. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose. tmpzr1t_l9r_go_relaxed.owl cellobiose permease activity GO:0019190 molecular_function owl:Class GO:0015154 biolink:NamedThing disaccharide transmembrane transporter activity Enables the transfer of disaccharide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002412 biolink:NamedThing antigen transcytosis by M cells in mucosal-associated lymphoid tissue The process of antigen transcytosis carried out by M cells in the mucosal-associated lymphoid tissue (MALT). Transcytosis is the process of the directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side. M cells are specialized epithelia cells with a microfold structure that are adept at moving antigens from the gut lumen to antigen presenting cells in the MALT. tmpzr1t_l9r_go_relaxed.owl antigen transport by M cells in mucosal-associated lymphoid tissue|antigen transport by M cells in MALT|antigen transcytosis by M cells in MALT biological_process owl:Class GO:1903872 biolink:NamedThing regulation of DNA recombinase mediator complex assembly Any process that modulates the frequency, rate or extent of DNA recombinase mediator complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of DNA recombinase mediator complex formation rb 2015-02-05T23:36:45Z biological_process owl:Class GO:0034824 biolink:NamedThing citronellyl-CoA dehydrogenase activity Catalysis of the reaction: citronellyl-CoA + NAD+ = cis-geranyl-CoA + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1159 molecular_function owl:Class GO:0019051 biolink:NamedThing induction by virus of host apoptotic process The set of viral processes that induce an apoptotic process in infected host cells, facilitating release and spread of progeny virions. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis in host by virus|induction by virus of host apoptotic programmed cell death|activation by virus of host apoptotic programmed cell death|activation by virus of host apoptosis|induction by virus of host apoptosis|activation of apoptosis in host by virus biological_process owl:Class GO:0060139 biolink:NamedThing positive regulation of apoptotic process by virus Any viral process that activates or increases the frequency, rate or extent of cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of apoptosis by virus biological_process owl:Class GO:2000898 biolink:NamedThing regulation of glucomannan catabolic process Any process that modulates the frequency, rate or extent of glucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glucomannan catabolism tt 2011-07-29T01:13:16Z biological_process owl:Class GO:2000454 biolink:NamedThing positive regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta cytotoxic T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:45:52Z biological_process owl:Class GO:0071894 biolink:NamedThing histone H2B conserved C-terminal lysine ubiquitination A histone ubiquitination process in which a ubiquitin monomer is added to a conserved lysine residue in the C-terminus of histone H2B. The conserved lysine residue is K119 in fission yeast, K123 in budding yeast, or K120 in mammals. tmpzr1t_l9r_go_relaxed.owl budding yeast H2B K123 ubiquitination|mammalian H2B K120 ubiquitination|fission yeast H2B K119 ubiquitination mah 2010-09-14T03:43:46Z biological_process owl:Class GO:1904572 biolink:NamedThing negative regulation of mRNA binding Any process that stops, prevents or reduces the frequency, rate or extent of mRNA binding. tmpzr1t_l9r_go_relaxed.owl downregulation of mRNA binding|down regulation of mRNA binding|inhibition of mRNA binding|down-regulation of mRNA binding sl 2015-08-19T17:51:03Z biological_process owl:Class GO:0010791 biolink:NamedThing DNA double-strand break processing involved in repair via synthesis-dependent strand annealing The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via synthesis-dependent strand annealing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048326 biolink:NamedThing positive regulation of axial mesodermal cell fate determination Any process that activates or increases the frequency, rate or extent of axial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl up regulation of axial mesodermal cell fate determination|upregulation of axial mesodermal cell fate determination|activation of axial mesodermal cell fate determination|stimulation of axial mesodermal cell fate determination|up-regulation of axial mesodermal cell fate determination biological_process owl:Class GO:0047187 biolink:NamedThing deacetyl-[citrate-(pro-3S)-lyase] S-acetyltransferase activity Catalysis of the reaction: deacetyl-[citrate-oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)-acetate)] + S-acetylphosphopantetheine = [citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)-acetate)] + pantetheine 4'-phosphate. tmpzr1t_l9r_go_relaxed.owl deacetyl-citrate-(pro-3S)-lyase S-acetyltransferase activity|S-acetyl phosphopantetheine:deacetyl citrate lyase S-acetyltransferase activity|S-acetylphosphopantetheine:deacetyl-citrate-oxaloacetate-lyase((pro-3S)-CH2COO-rightacetate)S-acetyltransferase activity|deacetyl-citrate-(pro-3S)-lyase acetyltransferase activity MetaCyc:2.3.1.49-RXN|EC:2.3.1.49|RHEA:20393 molecular_function owl:Class GO:1990333 biolink:NamedThing mitotic checkpoint complex, CDC20-MAD2 subcomplex A protein complex involved in the spindle checkpoint, preventing the activation of the anaphase-promoting complex until all chromosomes are correctly attached in a bipolar fashion to the mitotic spindle. In budding yeast this complex consists of Mad2p and Cdc20p, and in mammalian cells it consists of MAD2 and CDC20. tmpzr1t_l9r_go_relaxed.owl CDC20-MAD2 complex An example of this is cdc20 in Saccharomyces cerevisiae (P26309) in PMID:15879521 (inferred from direct assay). bhm 2014-03-17T14:11:35Z cellular_component owl:Class GO:0032548 biolink:NamedThing pyrimidine deoxyribonucleoside binding Binding to a pyrimidine deoxyribonucleoside, a compound consisting of a pyrimidine base linked to deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032546 biolink:NamedThing deoxyribonucleoside binding Binding to a deoxyribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0080047 biolink:NamedThing GDP-L-galactose phosphorylase activity Catalysis of the reaction: GDP-L-galactose + phosphate = L-galactose-1-P + GDP. tmpzr1t_l9r_go_relaxed.owl RHEA:27698|EC:2.7.7.69|MetaCyc:RXNQT-4141 molecular_function owl:Class GO:0140027 biolink:NamedThing contractile vacuole localization The directed movement of the contractile vacuole to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of contractile vacuole localization https://github.com/geneontology/go-ontology/issues/22182|https://github.com/geneontology/go-ontology/issues/13407 pg 2017-05-02T10:23:26Z biological_process owl:Class GO:1904474 biolink:NamedThing cellular response to L-dopa Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-dopa stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T20:15:59Z biological_process owl:Class GO:1905645 biolink:NamedThing negative regulation of FACT complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of FACT complex assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of Facilitates chromatin transcription complex formation|downregulation of FACT complex assembly|down-regulation of Facilitates chromatin transcription complex assembly|down-regulation of Facilitates chromatin transcription complex formation|down-regulation of FACT complex assembly|down regulation of FACT complex formation|inhibition of FACT complex assembly|inhibition of Facilitates chromatin transcription complex assembly|down regulation of FACT complex assembly|down-regulation of FACT complex formation|negative regulation of Facilitates chromatin transcription complex assembly|negative regulation of Facilitates chromatin transcription complex formation|downregulation of Facilitates chromatin transcription complex formation|downregulation of Facilitates chromatin transcription complex assembly|downregulation of FACT complex formation|negative regulation of FACT complex formation|inhibition of FACT complex formation|down regulation of Facilitates chromatin transcription complex formation|down regulation of Facilitates chromatin transcription complex assembly pga 2016-11-07T09:14:13Z biological_process owl:Class GO:1905644 biolink:NamedThing regulation of FACT complex assembly Any process that modulates the frequency, rate or extent of FACT complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of Facilitates chromatin transcription complex assembly|regulation of FACT complex formation|regulation of Facilitates chromatin transcription complex formation pga 2016-11-07T09:14:06Z biological_process owl:Class GO:0050896 biolink:NamedThing response to stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. tmpzr1t_l9r_go_relaxed.owl physiological response to stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0051869 biological_process owl:Class GO:1900757 biolink:NamedThing regulation of D-amino-acid oxidase activity Any process that modulates the frequency, rate or extent of D-amino-acid oxidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of L-amino acid:O2 oxidoreductase activity|regulation of new yellow enzyme|regulation of D-amino-acid:oxygen oxidoreductase (deaminating) pm 2012-05-31T11:23:45Z biological_process owl:Class GO:0001407 biolink:NamedThing glycerophosphodiester transmembrane transport The process in which a glycerophosphodiester is transported across a membrane. Glycerophosphodiesters are small molecules composed of glycerol-3-phosphate and an alcohol, for example, glycerophosphoinositol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043365 biolink:NamedThing [formate-C-acetyltransferase]-activating enzyme activity Catalysis of the reaction: S-adenosyl-L-methionine + dihydroflavodoxin + [formate C-acetyltransferase]-glycine = 5'-deoxyadenosine + L-methionine + flavodoxin semiquinone + [formate C-acetyltransferase]-glycin-2-yl radical. tmpzr1t_l9r_go_relaxed.owl formate acetyltransferase-glycine dihydroflavodoxin:S-adenosyl-L-methionine oxidoreductase (S-adenosyl-L-methionine cleaving) activity|formate-C-acetyltransferase-activating enzyme|PFL activase activity|pyruvate formate-lyase-activating enzyme|formate acetyltransferase activating enzyme activity|formate C-acetyltransferase-glycine dihydroflavodoxin:S-adenosyl-L-methionine oxidoreductase (S-adenosyl-L-methionine cleaving)|[pyruvate formate-lyase]-activating enzyme activity|PFL-glycine:S-adenosyl-L-methionine H transferase (flavodoxin-oxidizing, S-adenosyl-L-methionine-cleaving) activity https://github.com/geneontology/go-ontology/issues/14190 MetaCyc:TDCEACT-RXN|RHEA:19225|EC:1.97.1.4 GO:0008862 molecular_function owl:Class GO:0043364 biolink:NamedThing glycyl-radical enzyme activating activity Catalyzes the activation of an enzyme by generating an organic free radical on a glycine residue via a homolytic cleavage of S-adenosyl-L-methionine (SAM). tmpzr1t_l9r_go_relaxed.owl catalysis of free radical formation https://github.com/geneontology/go-ontology/issues/14190 EC:1.97.1.- molecular_function owl:Class GO:1990309 biolink:NamedThing type-II dockerin domain binding Binding to a type-II dockerin domain of a protein. Type-II dockerin domain is the binding partner of type-II cohesin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T03:16:49Z molecular_function owl:Class GO:0048563 biolink:NamedThing post-embryonic animal organ morphogenesis Morphogenesis, during the post-embryonic phase, of an animal tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015780 biolink:NamedThing nucleotide-sugar transmembrane transport The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl nucleotide-sugar transport biological_process owl:Class GO:0006982 biolink:NamedThing response to lipid hydroperoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid hydroperoxide stimulus. Lipid hydroperoxide is the highly reactive primary oxygenated products of polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl response to LHPO biological_process owl:Class GO:0033194 biolink:NamedThing response to hydroperoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroperoxide stimulus. Hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032676 biolink:NamedThing regulation of interleukin-7 production Any process that modulates the frequency, rate, or extent of interleukin-7 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-7 biosynthetic process|regulation of IL-7 production|regulation of interleukin-7 secretion GO:0045411|GO:0150112 biological_process owl:Class GO:0045435 biolink:NamedThing lycopene epsilon cyclase activity Catalysis of the cyclization of an epsilon ring at one end of the lycopene molecule (psi, psi-carotene) to form delta-carotene (epsilon, psi-carotene). tmpzr1t_l9r_go_relaxed.owl lycopene cyclase molecular_function owl:Class GO:0018548 biolink:NamedThing pentaerythritol trinitrate reductase activity Catalysis of the reaction: pentaerythritol trinitrate + NADPH = NADP+ + nitrate + pentaerythritol dinitrate. tmpzr1t_l9r_go_relaxed.owl xenobiotic reductase activity UM-BBD_reactionID:r0025|EC:1.6.99.1 molecular_function owl:Class GO:0034986 biolink:NamedThing iron chaperone activity Directly binding to and delivering iron ions to a target protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016530 biolink:NamedThing metallochaperone activity Binding to and delivering metal ions to a target protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901371 biolink:NamedThing regulation of leaf morphogenesis Any process that modulates the frequency, rate or extent of leaf morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T23:07:17Z biological_process owl:Class GO:0033167 biolink:NamedThing ARC complex A ribonucleoprotein complex that contains members of the Argonaute family of proteins, additional protein subunits, and duplex siRNA; required for heterochromatin assembly and siRNA generation. Possibly involved in the conversion of ds siRNA to ss siRNA. tmpzr1t_l9r_go_relaxed.owl argonaute siRNA chaperone complex cellular_component owl:Class GO:1904889 biolink:NamedThing regulation of excitatory synapse assembly Any process that modulates the frequency, rate or extent of excitatory synapse assembly. tmpzr1t_l9r_go_relaxed.owl regulation of excitatory synapse formation bf 2016-01-07T14:35:53Z biological_process owl:Class GO:0006722 biolink:NamedThing triterpenoid metabolic process The chemical reactions and pathways involving triterpenoid compounds, terpenoids with six isoprene units. tmpzr1t_l9r_go_relaxed.owl triterpenoid metabolism|triterpene metabolism|triterpene metabolic process biological_process owl:Class GO:0060157 biolink:NamedThing urinary bladder development The process whose specific outcome is the progression of the urinary bladder over time, from its formation to the mature structure. The urinary bladder is an elastic, muscular sac situated in the anterior part of the pelvic cavity in which urine collects before excretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008973 biolink:NamedThing phosphopentomutase activity Catalysis of the reaction: D-ribose 1-phosphate = D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl deoxyribose phosphomutase activity|alpha-D-ribose 1,5-phosphomutase activity|alpha-D-glucose-1,6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase activity|phosphoribomutase activity|phosphodeoxyribomutase activity|D-ribose 1,5-phosphomutase activity|deoxyribomutase activity EC:5.4.2.7|RHEA:18793|MetaCyc:PPENTOMUT-RXN|Reactome:R-HSA-8982667|Reactome:R-HSA-6787329 molecular_function owl:Class GO:0120191 biolink:NamedThing negative regulation of termination of RNA polymerase II transcription Any process that stops, prevents or reduces the frequency, rate or extent of termination of RNA polymerase II transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription termination from Pol II promoter|downregulation of RNA 3'-end formation by RNA polymerase II|down regulation of transcription termination from Pol II promoter|down regulation of transcription termination from RNA polymerase II promoter|down regulation of termination of RNA polymerase II transcription|negative regulation of RNA polymerase II transcription termination|down regulation of RNA polymerase II transcription termination factor activity|negative regulation of RNA polymerase II transcription termination factor activity|down-regulation of RNA polymerase II transcription termination factor activity|repression of RNA polymerase II transcription termination|down-regulation of termination of RNA polymerase II transcription|downregulation of transcription termination from Pol II promoter|down-regulation of transcription termination from RNA polymerase II promoter|repression of transcription termination from Pol II promoter|down regulation of RNA polymerase II transcription termination|downregulation of RNA polymerase II transcription termination|repression of termination of RNA polymerase II transcription|negative regulation of RNA 3'-end formation by RNA polymerase II|repression of transcription termination from RNA polymerase II promoter|downregulation of RNA polymerase II transcription termination factor activity|down-regulation of RNA 3'-end formation by RNA polymerase II|downregulation of termination of RNA polymerase II transcription|negative regulation of transcription termination from RNA polymerase II promoter|down-regulation of RNA polymerase II transcription termination|repression of RNA polymerase II transcription termination factor activity|repression of RNA 3'-end formation by RNA polymerase II|down-regulation of transcription termination from Pol II promoter|down regulation of RNA 3'-end formation by RNA polymerase II|downregulation of transcription termination from RNA polymerase II promoter krc 2018-07-18T15:43:40Z biological_process owl:Class GO:0140205 biolink:NamedThing oligopeptide import across plasma membrane The directed movement of an oligopeptide from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-22T15:48:21Z biological_process owl:Class GO:0070881 biolink:NamedThing regulation of proline transport Any process that modulates the frequency, rate or extent of proline transport. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-21T04:48:34Z biological_process owl:Class GO:0010522 biolink:NamedThing regulation of calcium ion transport into cytosol Any process that modulates the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009704 biolink:NamedThing de-etiolation The greening response of plants grown in the dark (etiolated) as a result of chloroplast biogenesis and the accumulation of chlorophyll. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036257 biolink:NamedThing multivesicular body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a multivesicular body. A multivesicular body is a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm. tmpzr1t_l9r_go_relaxed.owl MVB organization bf 2012-06-15T01:09:53Z biological_process owl:Class GO:0071655 biolink:NamedThing regulation of granulocyte colony-stimulating factor production Any process that modulates the frequency, rate, or extent of production of granulocyte colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl regulation of G-CSF production|regulation of filgrastim production|regulation of colony stimulating factor 3 (granulocyte) production|regulation of CSF3 production|regulation of granulocyte colony stimulating factor production|regulation of lenograstim production|regulation of pluripoietin production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0072760 biolink:NamedThing cellular response to GW 7647 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a GW 7647 stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:46:28Z biological_process owl:Class GO:0009126 biolink:NamedThing purine nucleoside monophosphate metabolic process The chemical reactions and pathways involving purine nucleoside monophosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside monophosphate metabolism biological_process owl:Class GO:1900103 biolink:NamedThing positive regulation of endoplasmic reticulum unfolded protein response Any process that activates or increases the frequency, rate or extent of endoplasmic reticulum unfolded protein response. tmpzr1t_l9r_go_relaxed.owl up-regulation of erUPR|up regulation of endoplasmic reticulum unfolded protein response|positive regulation of erUPR|up-regulation of ER unfolded protein response|positive regulation of SREBP-mediated signalling pathway|upregulation of ER unfolded protein response|up regulation of ER unfolded protein response|upregulation of erUPR|upregulation of endoplasmic reticulum unfolded protein response|up-regulation of endoplasmic reticulum unfolded protein response|up regulation of erUPR|activation of ER unfolded protein response|activation of erUPR|up regulation of SREBP-mediated signalling pathway|up-regulation of SREBP-mediated signalling pathway|activation of SREBP-mediated signalling pathway|positive regulation of ER unfolded protein response|upregulation of SREBP-mediated signalling pathway|activation of endoplasmic reticulum unfolded protein response ppm 2012-02-15T11:15:35Z biological_process owl:Class GO:0038109 biolink:NamedThing Kit signaling pathway A series of molecular signals that starts with the binding of stem cell factor to the tyrosine kinase receptor KIT on the surface of a cell, and ends with regulation of a downstream cellular process, e.g. transcription. Stem cell factor (KIT ligand) binding to the receptor Kit mediates receptor dimerization, activation of its intrinsic tyrosine kinase activity and autophosphorylation. The activated receptor then phosphorylates various substrates, thereby activating distinct signaling cascades within the cell that trigger a change in state or activity of the cell. tmpzr1t_l9r_go_relaxed.owl SCF signaling pathway|stem cell factor signaling pathway|Kit signalling pathway|stem cell factor receptor signaling pathway bf 2012-03-22T10:09:48Z biological_process owl:Class GO:0035749 biolink:NamedThing myelin sheath adaxonal region The region of the myelin sheath nearest to the axon. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-23T10:17:42Z cellular_component owl:Class GO:0036221 biolink:NamedThing UTP diphosphatase activity Catalysis of the reaction: UTP + H2O = UMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl uridine triphosphate pyrophosphohydrolase activity KEGG_REACTION:R00662|RHEA:29395 bf 2012-05-08T01:47:59Z molecular_function owl:Class GO:0072547 biolink:NamedThing tricoumaroylspermidine meta-hydroxylase activity Catalysis of the reaction: tricoumaroyl spermidine + NADPH + O2 = dicoumaroyl monocaffeoyl spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl tricoumaroyl spermidine meta-hydroxylase activity MetaCyc:RXN-11260 mah 2011-01-25T02:49:37Z molecular_function owl:Class GO:0072533 biolink:NamedThing tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity Catalysis of the meta-hydroxylation of any of the three phenolic rings on tricoumaroyl spermidine or any of its mono- or dicaffeoyl spermidine derivatives. tmpzr1t_l9r_go_relaxed.owl Note that the overall reaction representing three successive executions of this activity is N1,N5,N10-tricoumaroyl spermidine + 3 NADPH + 3 O2 = N1,N5,N10-tricaffeoyl spermidine + 3 NADP+ + 3 H2O; this corresponds to the MetaCyc reaction RXN-11260 (http://biocyc.org/META/NEW-IMAGE?type=REACTION&object=RXN-11260). mah 2011-01-12T02:03:07Z molecular_function owl:Class GO:0008720 biolink:NamedThing D-lactate dehydrogenase activity Catalysis of the reaction: (R)-lactate + NAD(+) = H(+) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl D-lactic acid dehydrogenase activity|D-lactic dehydrogenase activity EC:1.1.1.28|KEGG_REACTION:R00704|MetaCyc:DLACTDEHYDROGNAD-RXN|RHEA:16369 molecular_function owl:Class GO:0043323 biolink:NamedThing positive regulation of natural killer cell degranulation Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation. tmpzr1t_l9r_go_relaxed.owl up regulation of natural killer cell degranulation|positive regulation of natural killer cell granule exocytosis|up-regulation of natural killer cell degranulation|stimulation of natural killer cell degranulation|activation of natural killer cell degranulation|upregulation of natural killer cell degranulation|positive regulation of NK cell degranulation|positive regulation of NK cell granule exocytosis biological_process owl:Class GO:0045954 biolink:NamedThing positive regulation of natural killer cell mediated cytotoxicity Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl positive regulation of natural killer cell mediated cell killing|positive regulation of NK cell mediated cytolysis|up-regulation of natural killer cell mediated cytotoxicity|positive regulation of NK cell mediated cytotoxicity|up regulation of natural killer cell mediated cytotoxicity|activation of natural killer cell mediated cytotoxicity|positive regulation of natural killer cell mediated cell death|upregulation of natural killer cell mediated cytotoxicity|stimulation of natural killer cell mediated cytotoxicity|positive regulation of natural killer cell mediated cytolysis|positive regulation of NK cell mediated cell killing|positive regulation of NK cell mediated cell death biological_process owl:Class GO:0010817 biolink:NamedThing regulation of hormone levels Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000211 biolink:NamedThing regulation of glutamate metabolic process Any process that modulates the frequency, rate or extent of glutamate metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of glutamic acid metabolic process|regulation of glutamate metabolism|regulation of glutamic acid metabolism mah 2010-11-03T02:43:51Z biological_process owl:Class GO:0018466 biolink:NamedThing limonene-1,2-diol dehydrogenase activity Catalysis of the reaction: (1S,2S,4R)-limonene-1,2-diol + DCPIP+ = DCPIPH + H+ + (1S,4R)-1-hydroxy-2-oxolimonene. tmpzr1t_l9r_go_relaxed.owl EC:1.1.99.-|UM-BBD_reactionID:r0735 molecular_function owl:Class GO:1903439 biolink:NamedThing calcitonin family receptor complex A protein complex which is capable of calcitonin family receptor activity. Calcitonin family receptors may form dimers, trimers or tetramers; adrenomedullin and amylin receptors have only been observed as dimers so far. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-16T13:25:11Z cellular_component owl:Class GO:0097683 biolink:NamedThing dinoflagellate apex The anterior most point of a dinoflagellate epicone. tmpzr1t_l9r_go_relaxed.owl apex The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-12-18T09:29:51Z cellular_component owl:Class GO:0099113 biolink:NamedThing negative regulation of presynaptic cytosolic calcium concentration Any process that decreases the concentration of calcium ions in the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010571 biolink:NamedThing positive regulation of nuclear cell cycle DNA replication Any process that activates or increases the frequency, rate or extent of the DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of DNA replication during S phase|positive regulation of DNA replication involved in S phase|positive regulation of DNA replication involved in S-phase biological_process owl:Class GO:1903187 biolink:NamedThing negative regulation of vitellogenesis Any process that stops, prevents or reduces the frequency, rate or extent of vitellogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of yolk production|inhibition of vitellogenesis|downregulation of vitellogenesis|down regulation of yolk production|down-regulation of vitellogenesis|downregulation of yolk production|inhibition of yolk production|down regulation of vitellogenesis|negative regulation of yolk production mr 2014-07-14T19:28:06Z biological_process owl:Class GO:1903523 biolink:NamedThing negative regulation of blood circulation Any process that stops, prevents or reduces the frequency, rate or extent of blood circulation. tmpzr1t_l9r_go_relaxed.owl inhibition of blood circulation|down regulation of hemolymph circulation|negative regulation of hemolymph circulation|down-regulation of hemolymph circulation|downregulation of hemolymph circulation|down-regulation of blood circulation|inhibition of hemolymph circulation|downregulation of blood circulation|down regulation of blood circulation mr 2014-10-06T18:39:05Z biological_process owl:Class GO:1900188 biolink:NamedThing negative regulation of cell adhesion involved in single-species biofilm formation Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion involved in single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl downregulation of cell adhesion involved in single-species biofilm formation|down-regulation of cell adhesion involved in single-species biofilm formation|down regulation of cell adhesion involved in single-species biofilm formation|downregulation of cell adhesion during single-species biofilm formation|down regulation of cell adhesion during single-species biofilm formation|inhibition of cell adhesion involved in single-species biofilm formation|inhibition of cell adhesion during single-species biofilm formation|negative regulation of cell adhesion during single-species biofilm formation|down-regulation of cell adhesion during single-species biofilm formation di 2012-03-19T12:38:54Z biological_process owl:Class GO:1900274 biolink:NamedThing regulation of phospholipase C activity Any process that modulates the frequency, rate or extent of phospholipase C activity. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidase C|regulation of lecithinase C activity|regulation of lipophosphodiesterase C rl 2012-04-04T01:19:00Z biological_process owl:Class GO:0035170 biolink:NamedThing lymph gland crystal cell differentiation The process in which a relatively unspecialized larval lymph gland-derived hemocyte precursor cell acquires the specialized features of a crystal cell. Crystal cells are a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042688 biolink:NamedThing crystal cell differentiation The process in which a hemocyte precursor cell acquires the characteristics of a crystal cell, a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904488 biolink:NamedThing regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter A positive regulation of transcription from RNA polymerase II promoter that results in regulation of reactive oxygen species metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of reactive oxygen species metabolic process by upregulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by activation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by positive regulation of transcription from Pol II promoter|regulation of ROS metabolic process by activation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by up-regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by activation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by positive regulation of global transcription from Pol II promoter|regulation of reactive oxygen species metabolism by positive regulation of transcription from Pol II promoter|regulation of reactive oxygen species metabolism by upregulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by stimulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by up-regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by activation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by upregulation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by stimulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by up regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by activation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by upregulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by positive regulation of transcription from RNA polymerase II promoter, global|regulation of ROS metabolic process by positive regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by positive regulation of gene-specific transcription from RNA polymerase II promoter|regulation of ROS metabolic process by positive regulation of transcription from RNA polymerase II promoter, global|regulation of ROS metabolic process by up-regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by positive regulation of gene-specific transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by positive regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by stimulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by up regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by positive regulation of global transcription from Pol II promoter|regulation of reactive oxygen species metabolic process by up-regulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by up-regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by up regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by upregulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by stimulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by upregulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by activation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by up-regulation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by positive regulation of global transcription from Pol II promoter|regulation of reactive oxygen species metabolic process by stimulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by positive regulation of transcription from Pol II promoter|regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter, global|regulation of ROS metabolic process by positive regulation of gene-specific transcription from RNA polymerase II promoter|regulation of ROS metabolic process by stimulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by up regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by up regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by up regulation of global transcription from RNA polymerase II promoter kmv 2015-07-17T18:11:59Z biological_process owl:Class GO:0021929 biolink:NamedThing stellate cell precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to stellate cells. A cerebellar stellate cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021923 biolink:NamedThing cell proliferation in hindbrain ventricular zone The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain region that is adjacent to the ventricular cavity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071041 biolink:NamedThing antisense RNA transcript catabolic process The chemical reactions and pathways resulting in the breakdown of antisense transcripts, i.e. transcripts that were produced from the antisense strand of a gene that produces a gene product and which often have a regulatory effect on the transcription of that gene product. tmpzr1t_l9r_go_relaxed.owl krc 2009-07-29T01:39:36Z biological_process owl:Class GO:0042868 biolink:NamedThing antisense RNA metabolic process The chemical reactions and pathways involving antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis. tmpzr1t_l9r_go_relaxed.owl antisense RNA metabolism biological_process owl:Class GO:0010593 biolink:NamedThing negative regulation of lamellipodium assembly Any process that decreases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of lamellipodium biogenesis biological_process owl:Class GO:1902744 biolink:NamedThing negative regulation of lamellipodium organization Any process that stops, prevents or reduces the frequency, rate or extent of lamellipodium organization. tmpzr1t_l9r_go_relaxed.owl down-regulation of lamellipodium organization|downregulation of lamellipodium organization|inhibition of lamellipodium organization|down regulation of lamellipodium organization als 2014-02-28T16:27:39Z biological_process owl:Class GO:0051819 biolink:NamedThing induction by symbiont of tumor or growth in host The process in which a symbiont causes the formation of a mass of cells in a host organism. While these growths are often called nodules, they are not formed as nitrogen-fixing structures, but rather to provide an environment for the symbiont to grow. In this sense they are parasitic structures rather than mutualistic. tmpzr1t_l9r_go_relaxed.owl induction by symbiont in host of tumor, nodule, or growth containing transformed cells|induction of tumor, nodule, or growth containing transformed cells in other organism during symbiotic interaction|induction of tumor, nodule, or growth in other organism during symbiotic interaction|induction by symbiont in host of tumor, nodule, or growth|induction by symbiont of nodulation, tumor or growth in host|induction of tumor, nodule, or growth containing transformed cells in other organism involved in symbiotic interaction|induction of tumor, nodule, or growth in other organism involved in symbiotic interaction GO:0051820|GO:0044005|GO:0044006 biological_process owl:Class GO:0018031 biolink:NamedThing peptidyl-lysine N6-palmitoyltransferase activity Catalysis of the transfer of a palmitoyl group to the N6 nitrogen atom on a lysine residue of a peptide or protein molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.- molecular_function owl:Class GO:0043576 biolink:NamedThing regulation of respiratory gaseous exchange Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0020028 biolink:NamedThing endocytic hemoglobin import into cell The directed movement of hemoglobin into a cell by receptor-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl endocytic hemoglobin import|haemoglobin uptake|hemoglobin uptake biological_process owl:Class GO:0140394 biolink:NamedThing ABC-type azole transporter activity Enables the transfer of azoles, heterocyclic compound found in many biologically important substances, from one side of a membrane to the other according to the reaction: ATP + H2O + azole(in) = ADP + phosphate + azole(out). tmpzr1t_l9r_go_relaxed.owl azole ABC transporter activity|ATPase-coupled azole transmembrane transporter activity RHEA:33503 pg 2019-11-28T18:29:48Z molecular_function owl:Class GO:0099092 biolink:NamedThing postsynaptic density, intracellular component A network of proteins adjacent to the postsynaptic membrane forming an electron dense disc. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize neurotransmitter receptors in the adjacent membrane, such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901710 biolink:NamedThing regulation of homoserine biosynthetic process Any process that modulates the frequency, rate or extent of homoserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of homoserine formation|regulation of homoserine biosynthesis|regulation of homoserine anabolism|regulation of homoserine synthesis mcc 2012-12-19T16:01:56Z biological_process owl:Class GO:0098838 biolink:NamedThing folate transmembrane transport The process in which a folic acid, or one of its derivatives (dihydrofolate, tetrahydrofolate, methylene-tetrahydrofolate or methyl-tetrahydrofolate) is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl reduced folate transmembrane transport|folic acid transmembrane transport https://github.com/geneontology/go-ontology/issues/15461 biological_process owl:Class GO:0016603 biolink:NamedThing glutaminyl-peptide cyclotransferase activity Catalysis of the reaction: L-glutaminyl-peptide = 5-oxoprolyl-peptide + NH3. tmpzr1t_l9r_go_relaxed.owl glutaminyl-transfer ribonucleate cyclotransferase activity|L-glutaminyl-peptide gamma-glutamyltransferase (cyclizing)|glutaminyl-tRNA cyclotransferase activity|glutaminyl cyclase activity MetaCyc:GLUTAMINYL-PEPTIDE-CYCLOTRANSFERASE-RXN|EC:2.3.2.5|RHEA:23652 molecular_function owl:Class GO:0031551 biolink:NamedThing regulation of brain-derived neurotrophic factor-activated receptor activity Any process that modulates the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of BDNF receptor activity|regulation of brain-derived neurotrophic factor receptor activity biological_process owl:Class GO:0071160 biolink:NamedThing cyanophycin synthetase activity (L-aspartate-adding) Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n + L-Asp = ADP + phosphate + [L-Asp(4-L-Arg)]n-L-Asp. tmpzr1t_l9r_go_relaxed.owl EC:6.3.2.29|RHEA:13277 mah 2009-11-17T05:18:17Z molecular_function owl:Class GO:0043860 biolink:NamedThing cyanophycin synthetase activity Catalysis of the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer). tmpzr1t_l9r_go_relaxed.owl cphA EC:6.3.1.- molecular_function owl:Class GO:0046062 biolink:NamedThing dCDP metabolic process The chemical reactions and pathways involving dCDP, deoxycytidine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl dCDP metabolism biological_process owl:Class GO:0015310 biolink:NamedThing benomyl:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + benomyl(in) = H+(in) + benomyl(out). tmpzr1t_l9r_go_relaxed.owl benomyl:hydrogen antiporter activity molecular_function owl:Class GO:0036344 biolink:NamedThing platelet morphogenesis Generation and organization of a platelet, a non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-11T15:15:35Z biological_process owl:Class GO:0039638 biolink:NamedThing lipopolysaccharide-mediated virion attachment to host cell The process by which a virion attaches to a host cell by binding to a lipopolysaccharide (LPS) on the host cell surface. tmpzr1t_l9r_go_relaxed.owl LPS binding involved in viral attachment to host cell|lipopolysaccharide binding involved in viral attachment to host cell|virion attachment, binding to host lipopolysaccharide bf 2012-08-17T10:13:06Z biological_process owl:Class GO:0015146 biolink:NamedThing pentose transmembrane transporter activity Enables the transfer of a pentose sugar from one side of a membrane to the other. Pentose is a monosaccharide with 5 carbon atoms. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903487 biolink:NamedThing regulation of lactation Any process that modulates the frequency, rate or extent of lactation. tmpzr1t_l9r_go_relaxed.owl mr 2014-09-24T14:44:13Z biological_process owl:Class GO:0034748 biolink:NamedThing Par3-APC-KIF3A complex A protein complex that contains Par3, the tumor suppressor protein adenomatous polyposis coli (APC), and the kinesin-related protein KIF3A; involved in establishing neuronal cell polarity. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0036493 biolink:NamedThing positive regulation of translation in response to endoplasmic reticulum stress Any process that activates, or increases the frequency, rate or extent of translation as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl positive regulation of translation in response to ER stress bf 2015-02-05T10:09:51Z biological_process owl:Class GO:0061540 biolink:NamedThing octopamine secretion, neurotransmission The controlled release of octopamine by a cell, in which the octopamine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:24:47Z biological_process owl:Class GO:0061539 biolink:NamedThing octopamine secretion The controlled release of octopamine by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:24:02Z biological_process owl:Class GO:0048661 biolink:NamedThing positive regulation of smooth muscle cell proliferation Any process that activates or increases the rate or extent of smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl activation of smooth muscle cell proliferation|stimulation of smooth muscle cell proliferation|positive regulation of SMC proliferation|up-regulation of smooth muscle cell proliferation|up regulation of smooth muscle cell proliferation|upregulation of smooth muscle cell proliferation biological_process owl:Class GO:0046522 biolink:NamedThing S-methyl-5-thioribose kinase activity Catalysis of the reaction: S-methyl-5-thio-D-ribose + ATP = S-methyl-5-thio-alpha-D-ribose 1-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 5-methylthioribose kinase (phosphorylating)|ATP:S5-methyl-5-thio-D-ribose 1-phosphotransferase activity|ATP:S-methyl-5-thio-D-ribose 1-phosphotransferase activity|5-methylthioribose kinase activity|MTR kinase activity|methylthioribose kinase activity EC:2.7.1.100|KEGG_REACTION:R04143|MetaCyc:5-METHYLTHIORIBOSE-KINASE-RXN|RHEA:22312 molecular_function owl:Class GO:0035192 biolink:NamedThing nuclear cortical migration The symmetric outward movement of the syncytial nuclei from their positions in the ellipsoid toward the periphery of the embryo, during mitotic cycles 8 and 9. This movement results in the placement of nuclei in a uniform monolayer at the cortex of the developing embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061613 biolink:NamedThing glycolytic process from glycerol The glycolytic process in which glycerol is catabolized to pyruvate generating ATP and NADH. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-04T08:26:57Z biological_process owl:Class GO:0046713 biolink:NamedThing borate transport The directed movement of borate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals. tmpzr1t_l9r_go_relaxed.owl boron transport biological_process owl:Class GO:0061903 biolink:NamedThing positive regulation of 1-phosphatidylinositol-3-kinase activity Any process that starts or increases the frequency or rate of 1-phosphatidylinositol-3-kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-22T19:54:53Z biological_process owl:Class GO:0061901 biolink:NamedThing regulation of 1-phosphatidylinositol-3-kinase activity Any process that modulates the frequency, rate or extent of 1-phosphatidylinositol-3-kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-22T19:34:56Z biological_process owl:Class GO:0006112 biolink:NamedThing energy reserve metabolic process The chemical reactions and pathways by which a cell derives energy from stored compounds such as fats or glycogen. tmpzr1t_l9r_go_relaxed.owl energy reserve metabolism biological_process owl:Class GO:0015980 biolink:NamedThing energy derivation by oxidation of organic compounds The chemical reactions and pathways by which a cell derives energy from organic compounds; results in the oxidation of the compounds from which energy is released. tmpzr1t_l9r_go_relaxed.owl chemoorganotrophy biological_process owl:Class GO:0030869 biolink:NamedThing RENT complex A protein complex that mediates transcriptional silencing at the rDNA locus (the name derives from regulator of nucleolar silencing and telophase). In Saccharomyces the complex contains Net1p, Sir2p, Cdc14p, and at least one more subunit. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005677 biolink:NamedThing chromatin silencing complex Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005217 biolink:NamedThing intracellular ligand-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060570 biolink:NamedThing negative regulation of peptide hormone processing Any process that decreases the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-29T03:24:55Z biological_process owl:Class GO:0060568 biolink:NamedThing regulation of peptide hormone processing Any process that modulates the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-29T03:16:05Z biological_process owl:Class GO:0006038 biolink:NamedThing cell wall chitin biosynthetic process The chemical reactions and pathways resulting in the formation of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall chitin synthesis|cell wall chitin formation|cell wall chitin anabolism|cell wall chitin biosynthesis biological_process owl:Class GO:0061773 biolink:NamedThing eNoSc complex A chromatin silencing complex that recruits histone-modifying enzymes and upregulates silencing of rDNA in response to glucose starvation. tmpzr1t_l9r_go_relaxed.owl energy dependent nucleolar silencing complex dph 2016-07-09T10:12:30Z cellular_component owl:Class GO:0007622 biolink:NamedThing rhythmic behavior The specific behavior of an organism that recur with measured regularity. tmpzr1t_l9r_go_relaxed.owl rhythmic behavioral response to stimulus|rhythmic behaviour|rhythmic behavioural response to stimulus biological_process owl:Class GO:1905490 biolink:NamedThing negative regulation of sensory neuron axon guidance Any process that stops, prevents or reduces the frequency, rate or extent of sensory neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl inhibition of sensory neuron axon guidance|downregulation of sensory neuron axon guidance|down regulation of sensory neuron axon guidance|down-regulation of sensory neuron axon guidance hbye 2016-09-23T13:19:04Z biological_process owl:Class GO:0060628 biolink:NamedThing regulation of ER to Golgi vesicle-mediated transport Any process that modulates the rate, frequency, or extent of ER to Golgi vesicle-mediated transport, the directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:37:00Z biological_process owl:Class GO:0018506 biolink:NamedThing maleylacetate reductase activity Catalysis of the reaction: 3-oxoadipate + NAD(P)+ = 2-maleylacetate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 3-oxoadipate:NAD(P)+ oxidoreductase activity|maleolylacetate reductase activity EC:1.3.1.32|UM-BBD_enzymeID:e0063|MetaCyc:MALEYLACETATE-REDUCTASE-RXN molecular_function owl:Class GO:0005295 biolink:NamedThing neutral amino acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neutral amino acid(out) + Na+(out) = neutral amino acid(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl neutral amino acid-sodium cotransporter|sodium/neutral amino acid transporter GO:0005282 molecular_function owl:Class GO:0005283 biolink:NamedThing amino acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + Na+(out) = amino acid(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium:amino acid symporter activity|sodium/amino acid transporter activity|glutamate/aspartate:sodium symporter activity|insulin-activated sodium:amino acid symporter activity|insulin-activated sodium:amino acid transporter activity|isoleucine/valine:sodium symporter activity|sodium/excitatory amino acid cotransporter activity|threonine/serine:sodium symporter activity|sodium/excitatory amino acid symporter activity|sodium:amino acid transporter activity|insulin-activated sodium/amino acid transporter activity GO:0005285|GO:0005284 molecular_function owl:Class GO:0036475 biolink:NamedThing neuron death in response to oxidative stress Any biological process that results in permanent cessation of all vital functions of a neuron upon exposure to an oxidative stress stimulus. tmpzr1t_l9r_go_relaxed.owl oxidative stress-induced neuron death|neuronal cell death in response to oxidative stress This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide or use of neuron-specific markers) show that neuron death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the neuron death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death', GO:0006915 'apoptotic process' or GO:0010421 'hydrogen peroxide-mediated programmed cell death'), and the cell type captured as an annotation extension; or the term GO:0051402 'neuron apoptotic process' may be considered, if appropriate. bf 2014-07-21T11:44:40Z biological_process owl:Class GO:0070997 biolink:NamedThing neuron death The process of cell death in a neuron. tmpzr1t_l9r_go_relaxed.owl neuronal cell death|neuron cell death This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide or use of neuron-specific markers) show that neuron death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the neuron death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'), and the cell type captured as an annotation extension; or the term GO:0051402 'neuron apoptotic process' may be considered, if appropriate. mah 2009-11-03T02:37:17Z biological_process owl:Class GO:0072438 biolink:NamedThing response to DNA replication checkpoint signaling A process that occurs in response to signals generated as a result of DNA replication checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl DNA replication checkpoint effector process|response to signal involved in DNA replication checkpoint mah 2010-12-08T04:53:12Z biological_process owl:Class GO:0047421 biolink:NamedThing N-acyl-D-glutamate deacylase activity Catalysis of the reaction: N-acyl-D-glutamate + H(2)O = D-glutamate + a carboxylate. tmpzr1t_l9r_go_relaxed.owl N-acyl-D-glutamate amidohydrolase activity MetaCyc:3.5.1.82-RXN|RHEA:12833|EC:3.5.1.82|KEGG_REACTION:R01581 molecular_function owl:Class GO:1901270 biolink:NamedThing lipooligosaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of lipooligosaccharide. tmpzr1t_l9r_go_relaxed.owl lipooligosaccharide breakdown|lipooligosaccharide degradation|lipooligosaccharide catabolism yaf 2012-08-17T14:31:48Z biological_process owl:Class GO:0018037 biolink:NamedThing C-terminal peptidyl-aspartic acid amidation The formation of a C-terminal peptidyl-aspartic acid 1-amide by hydrolysis and oxidation of an interior Asp-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0084 biological_process owl:Class GO:0043465 biolink:NamedThing regulation of fermentation Any process that modulates the frequency, rate or extent of fermentation, the anaerobic enzymatic conversion of organic compounds, especially carbohydrates, to other compounds, especially to ethyl alcohol, resulting in energy in the form of adenosine triphosphate (ATP). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106071 biolink:NamedThing positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway Any process that activates or increases the frequency, rate or extent of an adenylate cyclase-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of adenylate cyclase-activating G-protein coupled receptor signaling pathway hjd 2017-11-28T18:38:52Z biological_process owl:Class GO:1900432 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms in response to heat Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to heat. tmpzr1t_l9r_go_relaxed.owl down-regulation of filamentous growth of a population of unicellular organisms in response to heat|down regulation of filamentous growth of a population of unicellular organisms in response to heat|downregulation of filamentous growth of a population of unicellular organisms in response to heat|inhibition of filamentous growth of a population of unicellular organisms in response to heat di 2012-04-25T05:54:15Z biological_process owl:Class GO:0046053 biolink:NamedThing dAMP metabolic process The chemical reactions and pathways involving dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dAMP metabolism biological_process owl:Class GO:0015394 biolink:NamedThing uridine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: uridine(out) + H+(out) = uridine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl uridine:hydrogen ion symporter activity|nucleoside (uridine) permease activity molecular_function owl:Class GO:0044751 biolink:NamedThing cellular response to human chorionic gonadotropin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a human chorionic gonadotropin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to human chorionic gonadotrophin stimulus jl 2012-11-20T16:19:45Z biological_process owl:Class GO:0071371 biolink:NamedThing cellular response to gonadotropin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to gonadotrophin stimulus mah 2009-12-11T03:14:35Z biological_process owl:Class GO:0052612 biolink:NamedThing adonirubin 3-hydroxylase activity Catalysis of the reaction: adonirubin + a reduced electron acceptor + oxygen = 3S,3'S-astaxanthin + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl carotene beta-ring hydroxylase activity|beta-ring carotenoid 3-hydroxylase activity|beta-carotene hydroxylase activity MetaCyc:RXN-8187 molecular_function owl:Class GO:0009603 biolink:NamedThing detection of symbiotic fungus The series of events in which a stimulus from a symbiotic fungus, a fungus living in close physical association with another organism, is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of symbiotic fungi|perception of symbiotic fungus|detection of symbiotic fungi biological_process owl:Class GO:0016046 biolink:NamedThing detection of fungus The series of events in which a stimulus from a fungus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of fungi|detection of parasitic fungus|perception of parasitic fungi|perception of parasitic fungus|perception of fungus|detection of parasitic fungi|perception of fungi GO:0016047|GO:0009599 biological_process owl:Class GO:0060741 biolink:NamedThing prostate gland stromal morphogenesis The process in which the prostate gland stroma is generated and organized. The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-16T09:27:01Z biological_process owl:Class GO:0061027 biolink:NamedThing umbilical cord development The process whose specific outcome is the development of the umbilical cord, from its formation to the mature structure. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T09:09:22Z biological_process owl:Class GO:0075132 biolink:NamedThing suppression by symbiont of host protein kinase-mediated signal transduction Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of protein kinase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host protein kinase-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "negative regulation by host of symbiont protein kinase-mediated signal transduction ; GO:0075101". biological_process owl:Class GO:0075130 biolink:NamedThing modulation by symbiont of host protein kinase-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of protein kinase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont protein kinase-mediated signal transduction ; GO:0075099". biological_process owl:Class GO:0070595 biolink:NamedThing (1->3)-alpha-glucan metabolic process The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl 1,3-alpha-glucan metabolic process|alpha-1,3 glucan metabolism|alpha-1,3 glucan metabolic process|1,3-alpha-glucan metabolism mah 2009-04-28T03:35:03Z biological_process owl:Class GO:1905368 biolink:NamedThing peptidase complex A protein complex which is capable of peptidase activity. tmpzr1t_l9r_go_relaxed.owl tryptase complex|protease complex An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay). bhm 2016-08-16T12:49:36Z cellular_component owl:Class GO:0002553 biolink:NamedThing histamine secretion by mast cell The regulated release of histamine by a mast cell or group of mast cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904295 biolink:NamedThing regulation of osmolarity-sensing cation channel activity Any process that modulates the frequency, rate or extent of osmolarity-sensing cation channel activity. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-09T17:35:40Z biological_process owl:Class GO:0071210 biolink:NamedThing protein insertion into membrane raft The process in which a protein is incorporated into a membrane raft. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization to membrane raft mah 2009-11-25T02:11:46Z biological_process owl:Class GO:1903044 biolink:NamedThing protein localization to membrane raft A process in which a protein is transported to, or maintained in, a location within a membrane raft. tmpzr1t_l9r_go_relaxed.owl protein localisation to membrane raft|protein localization in membrane raft|protein localisation in membrane raft dl 2014-05-21T10:49:03Z biological_process owl:Class GO:1900797 biolink:NamedThing cordyol C metabolic process The chemical reactions and pathways involving cordyol C. tmpzr1t_l9r_go_relaxed.owl cordyol C metabolism di 2012-06-04T09:47:48Z biological_process owl:Class GO:0047796 biolink:NamedThing cyclohexane-1,3-dione hydrolase activity Catalysis of the reaction: cyclohexane-1,3-dione + H(2)O = 5-oxohexanoate + H(+). tmpzr1t_l9r_go_relaxed.owl cyclohexane-1,3-dione acylhydrolase (decyclizing)|1,3-cyclohexanedione hydrolase activity RHEA:16473|EC:3.7.1.10|KEGG_REACTION:R03211|MetaCyc:CYCLOHEXANE-13-DIONE-HYDROLASE-RXN molecular_function owl:Class GO:0047589 biolink:NamedThing 5-aminovalerate transaminase activity Catalysis of the reaction: 2-oxoglutarate + 5-aminopentanoate = 5-oxopentanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 5-aminopentanoate:2-oxoglutarate aminotransferase activity|delta-aminovalerate aminotransferase activity|5-aminovalerate aminotransferase activity|delta-aminovalerate transaminase activity MetaCyc:VAGL-RXN|KEGG_REACTION:R02274|EC:2.6.1.48|RHEA:10212 molecular_function owl:Class GO:0019502 biolink:NamedThing stachydrine metabolic process The chemical reactions and pathways involving stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline found in alfalfa, chrysanthemum, and citrus plants. tmpzr1t_l9r_go_relaxed.owl stachydrine metabolism biological_process owl:Class GO:0005683 biolink:NamedThing U7 snRNP A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs. tmpzr1t_l9r_go_relaxed.owl snRNP U7 cellular_component owl:Class GO:0030532 biolink:NamedThing small nuclear ribonucleoprotein complex A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs. tmpzr1t_l9r_go_relaxed.owl small nuclear ribonucleoprotein|snRNP Wikipedia:SnRNP cellular_component owl:Class GO:0045006 biolink:NamedThing DNA deamination The removal of an amino group from a nucleotide base in DNA. An example is the deamination of cytosine to produce uracil. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018534 biolink:NamedThing nitrilotriacetate dehydrogenase activity Catalysis of the reaction: nitrilotriacetate + OH- = H+ + 2 e- + glyoxylate + iminodiacetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0588|EC:1.5.99.- molecular_function owl:Class GO:0140581 biolink:NamedThing P-type monovalent copper transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu+(in) -> ADP + phosphate + Cu+(out). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20699 EC:7.2.2.8|RHEA:25792 Note that this enzyme transports Cu(+) or Ag(+), and cannot transport the divalent ions, contrary to EC:7.2.2.9, which mainly transports the divalent copper ion (source: EC:7.2.2.8). pg 2021-01-18T11:15:13Z molecular_function owl:Class GO:1902632 biolink:NamedThing positive regulation of membrane hyperpolarization Any process that activates or increases the frequency, rate or extent of membrane hyperpolarization. tmpzr1t_l9r_go_relaxed.owl upregulation of membrane hyperpolarization|up-regulation of membrane hyperpolarization|activation of membrane hyperpolarization|up regulation of membrane hyperpolarization krc 2014-01-17T18:28:14Z biological_process owl:Class GO:0015425 biolink:NamedThing ATPase-coupled nonpolar-amino acid transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nonpolar amino acid(out) = ADP + phosphate + nonpolar amino acid(in). tmpzr1t_l9r_go_relaxed.owl nonpolar-amino acid-transporting ATPase activity|leucine/isoleucine/valine porter activity|nonpolar-amino acid ABC transporter|nonpolar amino acid-transporting ATPase activity|ATP-dependent nonpolar-amino acid transporter activity|nonpolar-amino-acid-transporting ATPase activity MetaCyc:3.6.3.22-RXN|EC:7.4.2.2|TC:3.A.1.4.1 molecular_function owl:Class GO:0015424 biolink:NamedThing ABC-type amino acid transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out/in) = ADP + phosphate + amino acid(in/out). tmpzr1t_l9r_go_relaxed.owl amino acid-exporting ATPase activity|amino acid-importing ATPase activity|amino acid-transporting ATPase activity|amino acid ABC transporter|ATPase-coupled amino acid transmembrane transporter activity|ATP-dependent amino acid transmembrane transporter activity GO:0032520|GO:0032518 molecular_function owl:Class GO:0042941 biolink:NamedThing D-alanine transport The directed movement of D-alanine, the D-enantiomer of 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032328 biolink:NamedThing alanine transport The directed movement of alanine, 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990405 biolink:NamedThing protein antigen binding Binding to a protein antigen. tmpzr1t_l9r_go_relaxed.owl pm 2014-06-30T13:19:55Z molecular_function owl:Class GO:0003823 biolink:NamedThing antigen binding Binding to an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen. tmpzr1t_l9r_go_relaxed.owl antibody|opsonin activity|B cell receptor activity|immunoglobulin molecular_function owl:Class GO:1904444 biolink:NamedThing regulation of establishment of Sertoli cell barrier Any process that modulates the frequency, rate or extent of establishment of Sertoli cell barrier. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of blood-testis barrier|regulation of establishment of BTB|regulation of establishment of SCB sl 2015-07-06T16:00:41Z biological_process owl:Class GO:1990344 biolink:NamedThing secondary cell septum biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a secondary cell septum following nuclear division. tmpzr1t_l9r_go_relaxed.owl mah 2014-03-24T13:24:48Z biological_process owl:Class GO:1903501 biolink:NamedThing positive regulation of mitotic actomyosin contractile ring assembly Any process that activates or increases the frequency, rate or extent of mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl activation of mitotic actomyosin contractile ring assembly|positive regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|upregulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|up-regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|up-regulation of contractile ring assembly involved in mitotic cytokinesis|up regulation of mitotic actomyosin contractile ring assembly|activation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|upregulation of contractile ring assembly involved in mitotic cytokinesis|up regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|upregulation of mitotic actomyosin contractile ring assembly|up-regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|activation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|positive regulation of contractile ring assembly involved in mitotic cytokinesis|activation of contractile ring assembly involved in mitotic cytokinesis|up-regulation of mitotic actomyosin contractile ring assembly|upregulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|up regulation of contractile ring assembly involved in mitotic cytokinesis|up regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|positive regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|positive regulation of mitotic cytokinesis, actomyosin contractile ring assembly pr 2014-09-30T10:14:07Z biological_process owl:Class GO:0051718 biolink:NamedThing DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates Catalysis of the reaction: S-adenosyl-L-methionine + CpG (in DNA) = S-adenosyl-L-homocysteine + 5-MeCpG (in DNA). tmpzr1t_l9r_go_relaxed.owl M.BsuRIb|HpaII methylase|M.BsuRIa|HpaII' methylase Reactome:R-HSA-5334151 molecular_function owl:Class GO:0071854 biolink:NamedThing cell wall macromolecule catabolic process involved in fungal-type cell wall disassembly The chemical reactions and pathways that result in the breakdown of macromolecules that form part of a cell wall, and contributes to the breakdown of the fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:12:08Z biological_process owl:Class GO:0070910 biolink:NamedThing cell wall macromolecule catabolic process involved in cell wall disassembly The chemical reactions and pathways that result in the breakdown of macromolecules that form part of a cell wall, and contributes to the breakdown of the cell wall. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-09T02:40:57Z biological_process owl:Class GO:0060547 biolink:NamedThing negative regulation of necrotic cell death Any process that decreases the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T01:51:25Z biological_process owl:Class GO:0090359 biolink:NamedThing negative regulation of abscisic acid biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. tmpzr1t_l9r_go_relaxed.owl negative regulation of abscisic acid biosynthesis tb 2010-06-29T02:47:12Z biological_process owl:Class GO:0034526 biolink:NamedThing 2-methylnaphthalene hydroxylase activity Catalysis of the reaction: 2-methylnaphthalene + NADH + O2 + H+ = 2-hydroxymethylnaphthalene + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0788|EC:1.14.13.- molecular_function owl:Class GO:0021738 biolink:NamedThing fastigial nucleus development The process whose specific outcome is the progression of the fastigial nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034132 biolink:NamedThing negative regulation of toll-like receptor 1 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 1 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of TLR1 signaling pathway|negative regulation of toll-like receptor 1 signalling pathway biological_process owl:Class GO:0015513 biolink:NamedThing high-affinity secondary active nitrite transmembrane transporter activity Catalysis of the transfer of nitrite from one side of the membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl nitrite uptake permease activity molecular_function owl:Class GO:0006172 biolink:NamedThing ADP biosynthetic process The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl ADP formation|ADP synthesis|ADP biosynthesis|ADP anabolism biological_process owl:Class GO:0033285 biolink:NamedThing ATPase-coupled monocarboxylic acid transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + monocarboxylic acid(out/in) = ADP + phosphate + monocarboxylic acid(in/out). tmpzr1t_l9r_go_relaxed.owl monocarboxylic acid-transporting ATPase activity|ATP-dependent monocarboxylic acid transmembrane transporter activity molecular_function owl:Class GO:0061364 biolink:NamedThing apoptotic process involved in luteolysis The apoptotic process that contributes to luteolysis. tmpzr1t_l9r_go_relaxed.owl structural luteolysis|apoptosis involved in luteolysis dph 2010-10-14T03:18:49Z biological_process owl:Class GO:0022031 biolink:NamedThing telencephalon astrocyte cell migration The orderly movement of an astrocyte cell through the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043615 biolink:NamedThing astrocyte cell migration The orderly movement of an astrocyte, a class of large neuroglial (macroglial) cells in the central nervous system, the largest and most numerous neuroglial cells in the brain and spinal cord. tmpzr1t_l9r_go_relaxed.owl astrocytic glial cell migration|astrocyte migration biological_process owl:Class GO:0070286 biolink:NamedThing axonemal dynein complex assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal dynein complex, a dynein complex found in eukaryotic cilia and flagella, in which the motor domain heads interact with adjacent microtubules to generate a sliding force which is converted to a bending motion. tmpzr1t_l9r_go_relaxed.owl dynein arm assembly biological_process owl:Class GO:0019854 biolink:NamedThing L-ascorbic acid catabolic process The chemical reactions and pathways resulting in the breakdown of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. tmpzr1t_l9r_go_relaxed.owl ascorbate catabolism|L-ascorbic acid catabolism|L-ascorbic acid breakdown|vitamin C catabolic process|vitamin C catabolism|ascorbate catabolic process|L-ascorbic acid degradation MetaCyc:PWY0-301 biological_process owl:Class GO:0140315 biolink:NamedThing iron ion sequestering activity The selective interaction of a protein with an iron ion to prevent it from interacting with other partners or inhibiting its localization to other areas of the cell. tmpzr1t_l9r_go_relaxed.owl pg 2019-03-28T10:10:33Z molecular_function owl:Class GO:1990097 biolink:NamedThing SeqA-DNA complex A protein-DNA complex that contains an oligomer of SeqA bound to GATC sites in methylated or newly-synthesized, hemi-methylated double-stranded DNA, with preference for the latter. Binding of SeqA to hemimethylated DNA sequesters oriC, prevents re-methylation of DNA by Dam and in turn stops premature re-initiation of replication during one replication cycle. tmpzr1t_l9r_go_relaxed.owl SeqA-dsDNA complex|SeqA-hemimethylation dsDNA complex|SeqA-hemimethylated DNA complex bhm 2013-05-13T11:18:11Z cellular_component owl:Class GO:1904800 biolink:NamedThing negative regulation of neuron remodeling Any process that stops, prevents or reduces the frequency, rate or extent of neuron remodeling. tmpzr1t_l9r_go_relaxed.owl inhibition of axon pruning|down-regulation of axon pruning|down-regulation of neuron remodeling|downregulation of neuron remodeling|negative regulation of axon pruning|negative regulation of neuronal remodeling|down regulation of axon pruning|downregulation of axon pruning|inhibition of neuron remodeling|down regulation of neuronal remodeling|down regulation of neuron remodeling|inhibition of neuronal remodeling|downregulation of neuronal remodeling|down-regulation of neuronal remodeling cyy-1 in C. Elegans (P34624) in PMID:21609829 (inferred from mutant phenotype) es 2015-11-09T13:47:00Z biological_process owl:Class GO:1904799 biolink:NamedThing regulation of neuron remodeling Any process that modulates the frequency, rate or extent of neuron remodeling. tmpzr1t_l9r_go_relaxed.owl regulation of axon pruning|regulation of neuronal remodeling cyy-1 in C. Elegans (P34624) in PMID:21609829 (inferred from mutant phenotype) es 2015-11-09T13:46:52Z biological_process owl:Class GO:0033311 biolink:NamedThing chlorophyll a biosynthetic process via phytyl diphosphate The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate phytyl diphosphate. tmpzr1t_l9r_go_relaxed.owl chlorophyll a biosynthetic process via phytyl-PP|chlorophyll a biosynthesis via phytyl diphosphate|chlorophyll a synthesis via phytyl diphosphate|chlorophyll a anabolism via phytyl diphosphate|chlorophyll a formation via phytyl chlorophyll a formation via phytyl-PP MetaCyc:PWY-5086 biological_process owl:Class GO:0050506 biolink:NamedThing vomilenine glucosyltransferase activity Catalysis of the reaction: UDP-D-glucose + vomilenine = H(+) + raucaffricine + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:vomilenine 21-O-beta-D-glucosyltransferase activity|vomilenine-glucosyltransferase activity|UDPG:vomilenine 21-beta-D-glucosyltransferase activity|UDPG:vomilenine 21beta-D-glucosyltransferase activity EC:2.4.1.219|RHEA:19385|KEGG_REACTION:R05882|MetaCyc:2.4.1.219-RXN molecular_function owl:Class GO:0035278 biolink:NamedThing miRNA-mediated gene silencing by inhibition of translation The process in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically mediate repression of translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs. tmpzr1t_l9r_go_relaxed.owl gene silencing by miRNA, negative regulation of translation|down-regulation of translation involved in gene silencing by miRNA|miRNA mediated inhibition of translation|downregulation of translation involved in gene silencing by miRNA|down regulation of translation involved in gene silencing by miRNA|inhibition of translation involved in gene silencing by miRNA|miRNA-mediated gene silencing, negative regulation of translation|negative regulation of translation involved in gene silencing by microRNA biological_process owl:Class GO:0035195 biolink:NamedThing gene silencing by miRNA Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: endolytic cleavage of the RNA (often mRNA) or mRNA translational repression, usually accompanied by poly-A tail shortening and subsequent degradation of the mRNA. tmpzr1t_l9r_go_relaxed.owl gene silencing by microRNA|microRNA-mediated gene silencing|miRNA-mediated gene silencing biological_process owl:Class GO:0044340 biolink:NamedThing canonical Wnt signaling pathway involved in regulation of cell proliferation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to modulating the rate or frequency of cell proliferation. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in regulation of cell proliferation|canonical Wnt receptor signaling pathway involved in regulation of cell proliferation|canonical Wnt-activated signaling pathway involved in regulation of cell proliferation jl 2010-08-20T03:57:25Z biological_process owl:Class GO:1902018 biolink:NamedThing negative regulation of cilium assembly Any process that stops, prevents or reduces the frequency, rate or extent of cilium assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of ciliogenesis|downregulation of cilium biogenesis|down-regulation of cilium assembly|downregulation of cilium assembly|down regulation of cilium biogenesis|inhibition of cilium biogenesis|down regulation of cilium assembly|negative regulation of ciliogenesis|down-regulation of cilium biogenesis|negative regulation of cilium biogenesis|down-regulation of ciliogenesis|down regulation of ciliogenesis|inhibition of cilium assembly|inhibition of ciliogenesis dph 2013-03-26T18:10:56Z biological_process owl:Class GO:2001228 biolink:NamedThing regulation of response to gamma radiation Any process that modulates the frequency, rate or extent of response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl regulation of response to gamma ray|regulation of response to gamma-ray photon yaf 2011-11-20T04:51:07Z biological_process owl:Class GO:0030852 biolink:NamedThing regulation of granulocyte differentiation Any process that modulates the frequency, rate or extent of granulocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046664 biolink:NamedThing dorsal closure, amnioserosa morphology change The changes that occur during dorsal closure of the shape and structure of the amnioserosa, an epithelium that occupies the dorsal side of the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904950 biolink:NamedThing negative regulation of establishment of protein localization Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization. tmpzr1t_l9r_go_relaxed.owl down regulation of protein recruitment|inhibition of protein recruitment|negative regulation of protein positioning|down regulation of establishment of protein localization|down regulation of establishment of protein localisation|down-regulation of protein positioning|down-regulation of protein recruitment|inhibition of establishment of protein localization|inhibition of establishment of protein localisation|down-regulation of establishment of protein localisation|negative regulation of protein recruitment|downregulation of establishment of protein localization|inhibition of protein positioning|down regulation of protein positioning|downregulation of protein positioning|downregulation of establishment of protein localisation|downregulation of protein recruitment|down-regulation of establishment of protein localization|negative regulation of establishment of protein localisation mec 2016-02-05T09:59:24Z biological_process owl:Class GO:0010616 biolink:NamedThing negative regulation of cardiac muscle adaptation Any process that decreases the rate, extent or frequency of the process in which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019975 biolink:NamedThing interleukin-17 binding Binding to a member of the interleukin-17 family of cytokines. tmpzr1t_l9r_go_relaxed.owl IL-17 binding molecular_function owl:Class GO:0060650 biolink:NamedThing epithelial cell proliferation involved in mammary gland bud elongation The multiplication or reproduction of mammary gland bud epithelial cells, resulting in the elongation of the bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:54:54Z biological_process owl:Class GO:1904678 biolink:NamedThing alpha-aminoacyl-tRNA binding Binding to an alpha-aminoacyl-tRNA. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA binding hjd 2015-09-18T16:44:17Z molecular_function owl:Class GO:0000923 biolink:NamedThing equatorial microtubule organizing center A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis. tmpzr1t_l9r_go_relaxed.owl EMTOC|equatorial microtubule organising centre cellular_component owl:Class GO:0035313 biolink:NamedThing wound healing, spreading of epidermal cells The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044319 biolink:NamedThing wound healing, spreading of cells The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface. tmpzr1t_l9r_go_relaxed.owl cell migration involved in wound healing epiboly jl 2010-07-14T02:10:01Z biological_process owl:Class GO:0015194 biolink:NamedThing L-serine transmembrane transporter activity Enables the transfer of L-serine from one side of a membrane to the other. L-serine is the L-enantiomer of 2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-serine permease activity|threonine/serine:sodium symporter activity|L-serine transporter activity|serine transporter activity Reactome:R-HSA-8932980 GO:1905361|GO:0015511 molecular_function owl:Class GO:1901039 biolink:NamedThing regulation of peptide antigen transport Any process that modulates the frequency, rate or extent of peptide antigen transport. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-22T04:07:56Z biological_process owl:Class GO:0002583 biolink:NamedThing regulation of antigen processing and presentation of peptide antigen Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen. tmpzr1t_l9r_go_relaxed.owl regulation of peptide antigen processing and presentation biological_process owl:Class GO:0007473 biolink:NamedThing wing disc proximal/distal pattern formation The establishment, maintenance and elaboration of the proximal/distal axis of the wing disc, a precursor to the adult wing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007449 biolink:NamedThing proximal/distal pattern formation, imaginal disc The establishment, maintenance and elaboration of the proximal/distal axis of the imaginal disc. Imaginal disks are masses of hypodermic cells, carried by the larvae of some insects after leaving the egg, from which masses the wings and legs of the adult are subsequently formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106394 biolink:NamedThing negative regulation of palmitic acid catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of a palmitic acid catabolic process. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T15:25:47Z biological_process owl:Class GO:0106393 biolink:NamedThing regulation of palmitic acid catabolic process Any process that modulates the frequency, rate or extent of a palmitic acid catabolic process. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-08T15:17:05Z biological_process owl:Class GO:0003010 biolink:NamedThing voluntary skeletal muscle contraction A process in which force is generated within voluntary skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the voluntary skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and it is under voluntary control. Voluntary skeletal muscle is skeletal muscle that is under conscious control. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003009 biolink:NamedThing skeletal muscle contraction A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090354 biolink:NamedThing regulation of auxin metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl regulation of auxin metabolism tb 2010-06-29T01:51:18Z biological_process owl:Class GO:0042441 biolink:NamedThing eye pigment metabolic process The chemical reactions and pathways involving eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye. tmpzr1t_l9r_go_relaxed.owl eye pigment metabolism biological_process owl:Class GO:2000367 biolink:NamedThing regulation of acrosomal vesicle exocytosis Any process that modulates the frequency, rate or extent of acrosomal vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of acrosome exocytosis|regulation of acrosomal granule exocytosis yaf 2011-02-07T11:52:34Z biological_process owl:Class GO:0017158 biolink:NamedThing regulation of calcium ion-dependent exocytosis Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030987 biolink:NamedThing high molecular weight kininogen receptor binding Binding to a high molecular weight kininogen receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140702 biolink:NamedThing cyclic GMP-AMP binding Binding to cyclic GMP-AMP (cGAMP) nucleotide. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21980 pg 2021-08-27T05:39:31Z molecular_function owl:Class GO:0032559 biolink:NamedThing adenyl ribonucleotide binding Binding to an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901017 biolink:NamedThing negative regulation of potassium ion transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl down regulation of potassium ion transmembrane transporter activity|downregulation of potassium transporter activity|downregulation of potassium ion transmembrane transporter activity|down-regulation of potassium transporter activity|inhibition of potassium ion transmembrane transporter activity|negative regulation of potassium transporter activity|inhibition of potassium transporter activity|down-regulation of potassium ion transmembrane transporter activity|down regulation of potassium transporter activity rl 2012-06-15T01:14:10Z biological_process owl:Class GO:2001173 biolink:NamedThing regulation of histone H2B conserved C-terminal lysine ubiquitination Any process that modulates the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of fission yeast H2B K119 ubiquitination|regulation of mammalian H2B K120 ubiquitination|regulation of budding yeast H2B K123 ubiquitination se 2011-10-29T06:28:47Z biological_process owl:Class GO:0010110 biolink:NamedThing regulation of photosynthesis, dark reaction Any process that modulates the frequency, rate or extent of photosynthesis dark reaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902682 biolink:NamedThing protein localization to pericentric heterochromatin A process in which a protein is transported to, or maintained in the pericentric heterochromatin. tmpzr1t_l9r_go_relaxed.owl protein localisation in centromeric heterochromatin mah 2014-02-05T16:59:30Z biological_process owl:Class GO:0097355 biolink:NamedThing protein localization to heterochromatin Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into heterochromatin. tmpzr1t_l9r_go_relaxed.owl protein localisation to heterochromatin pr 2012-07-03T03:19:07Z biological_process owl:Class GO:0001930 biolink:NamedThing positive regulation of exocyst assembly Any process that increases the rate or extent of exocyst assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of exocyst assembly|upregulation of exocyst assembly|stimulation of exocyst assembly|up regulation of exocyst assembly|activation of exocyst assembly biological_process owl:Class GO:0015047 biolink:NamedThing NADPH-cytochrome-c2 reductase activity Catalysis of the reaction: NADPH + H+ + 2 ferricytochrome c2 = NADP+ + 2 ferrocytochrome c2. tmpzr1t_l9r_go_relaxed.owl cytochrome c2 reductase (reduced nicotinamide adinine dinucleotide phosphate, NADPH)|reductase, cytochrome c2 (reduced nicotinamide adenine dinucleotide phosphate)|NADPH:ferricytochrome-c2 oxidoreductase activity RHEA:15237|EC:1.6.2.5|MetaCyc:NADPH--CYTOCHROME-C2-REDUCTASE-RXN molecular_function owl:Class GO:0016653 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a heme protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, haem protein as acceptor|oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor EC:1.6.2.- molecular_function owl:Class GO:0070195 biolink:NamedThing growth hormone receptor complex A receptor complex that consists of two identical subunits and binds growth hormone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043235 biolink:NamedThing receptor complex Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005984 biolink:NamedThing disaccharide metabolic process The chemical reactions and pathways involving any disaccharide, sugars composed of two monosaccharide units. tmpzr1t_l9r_go_relaxed.owl disaccharide metabolism biological_process owl:Class GO:0046583 biolink:NamedThing cation efflux transmembrane transporter activity Enables the transfer of a cation or cations from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl cation efflux permease activity molecular_function owl:Class GO:0044513 biolink:NamedThing envenomation resulting in modulation of G protein-coupled receptor activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of G protein-coupled receptor activity in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in modulation of G-protein coupled receptor activity in other organism jl 2012-02-26T11:02:17Z biological_process owl:Class GO:1900750 biolink:NamedThing oligopeptide binding Binding to an oligopeptide. tmpzr1t_l9r_go_relaxed.owl Oligopeptid binding|oligopeptides binding|oligopeptido binding jl 2012-05-29T02:13:31Z molecular_function owl:Class GO:0006997 biolink:NamedThing nucleus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear organisation|nuclear organization and biogenesis|nuclear morphology|nucleus organization and biogenesis|nuclear organization GO:0048287 biological_process owl:Class GO:0004298 biolink:NamedThing threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl large multicatalytic protease|tricorn protease|tricorn proteinase|proteasome endopeptidase complex|MCP|prosome|threonine endopeptidase activity|26S protease|multicatalytic proteinase (complex)|multicatalytic proteinase|ingensin|alkaline protease|multicatalytic endopeptidase complex|lens neutral proteinase EC:3.4.25.- molecular_function owl:Class GO:0004175 biolink:NamedThing endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl endoprotease activity|elastase activity|proteinase|proteasome endopeptidase activity Reactome:R-HSA-9008475|Reactome:R-HSA-8939801|Reactome:R-HSA-9010096|Reactome:R-HSA-1234159|Reactome:R-HSA-5668481|Reactome:R-HSA-6784676|Reactome:R-HSA-8866553|Reactome:R-HSA-174202|Reactome:R-HSA-5635854|Reactome:R-HSA-2213200|Reactome:R-HSA-9009362|Reactome:R-HSA-5635868|Reactome:R-HSA-5658430|Reactome:R-HSA-450466|Reactome:R-HSA-74730|Reactome:R-HSA-8934819|Reactome:R-HSA-187574|Reactome:R-HSA-180573|Reactome:R-HSA-5358460|Reactome:R-HSA-8854071|Reactome:R-HSA-8850992|Reactome:R-HSA-193682|Reactome:R-HSA-5668520|Reactome:R-HSA-4641256|Reactome:R-HSA-180603|Reactome:R-HSA-68825|Reactome:R-HSA-2130282|Reactome:R-HSA-8952408|Reactome:R-HSA-8957265|Reactome:R-HSA-1433374|MetaCyc:RXN0-5195|Reactome:R-HSA-9604642|Reactome:R-HSA-1236970|Reactome:R-HSA-5687112|Reactome:R-HSA-264458|Reactome:R-HSA-1236935|Reactome:R-HSA-5607731|Reactome:R-HSA-5358340|Reactome:R-HSA-8866858|Reactome:R-HSA-8852354|Reactome:R-HSA-5607724|Reactome:R-HSA-69016|Reactome:R-HSA-174255|Reactome:R-HSA-1168640|Reactome:R-HSA-1504193|Reactome:R-HSA-983158|Reactome:R-HSA-69600|Reactome:R-HSA-1251997|Reactome:R-HSA-174105|Reactome:R-HSA-3640874|Reactome:R-HSA-9008110|Reactome:R-HSA-4608855|Reactome:R-HSA-5387392|Reactome:R-HSA-75825|Reactome:R-HSA-209061|Reactome:R-HSA-188191|Reactome:R-HSA-5610760|Reactome:R-HSA-68948|Reactome:R-HSA-211715|Reactome:R-HSA-174203|Reactome:R-HSA-9614271|Reactome:R-HSA-5362448|Reactome:R-HSA-5610757|Reactome:R-HSA-353125|Reactome:R-HSA-5693081|Reactome:R-HSA-983150|Reactome:R-HSA-3928656|Reactome:R-HSA-5610758|Reactome:R-HSA-8854044|Reactome:R-HSA-8849797|Reactome:R-HSA-6784628|Reactome:R-HSA-174058|Reactome:R-HSA-9011313|Reactome:R-HSA-4641260|Reactome:R-HSA-5610754 GO:0016809 molecular_function owl:Class GO:0072544 biolink:NamedThing L-DOPA binding Binding to L-DOPA, the modified amino acid (2S)-2-amino-3-(3,4-dihydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-19T05:40:04Z molecular_function owl:Class GO:0051513 biolink:NamedThing regulation of monopolar cell growth Any process that modulates the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051510 biolink:NamedThing regulation of unidimensional cell growth Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. tmpzr1t_l9r_go_relaxed.owl regulation of cell elongation biological_process owl:Class GO:0031856 biolink:NamedThing parathyroid hormone receptor binding Binding to a parathyroid hormone receptor. tmpzr1t_l9r_go_relaxed.owl parathyroid hormone receptor ligand molecular_function owl:Class GO:0047446 biolink:NamedThing (1-hydroxycyclohexan-1-yl)acetyl-CoA lyase activity Catalysis of the reaction: (1-hydroxycyclohexan-1-yl)acetyl-CoA = acetyl-CoA + cyclohexanone. tmpzr1t_l9r_go_relaxed.owl (1-hydroxycyclohexan-1-yl)acetyl-CoA cyclohexanone-lyase (acetyl-CoA-forming)|(1-hydroxycyclohexan-1-yl)acetyl-CoA cyclohexanone-lyase activity RHEA:23868|MetaCyc:4.1.3.35-RXN|EC:4.1.3.35|KEGG_REACTION:R02232 molecular_function owl:Class GO:1904933 biolink:NamedThing regulation of cell proliferation in midbrain Any process that modulates the frequency, rate or extent of cell proliferation in midbrain. tmpzr1t_l9r_go_relaxed.owl regulation of mesencepahalic cell proliferation|regulation of cell proliferation in mesencephalon bf 2016-02-01T13:16:11Z biological_process owl:Class GO:0014703 biolink:NamedThing oscillatory muscle contraction A process in which force is generated within oscillatory skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Oscillatory muscle contraction occurs in insect wing muscles and is characterized by asynchrony between action potential and contraction and by stretch activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060719 biolink:NamedThing chorionic trophoblast cell development The process whose specific outcome is the progression of the chorionic trophoblast over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T02:58:45Z biological_process owl:Class GO:0035984 biolink:NamedThing cellular response to trichostatin A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichostatin A stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-23T01:48:43Z biological_process owl:Class GO:0080166 biolink:NamedThing stomium development The process whose specific outcome is the progression of the stomium over time, from its formation to the mature structure. A stomium is a fissure or pore in the anther lobe through which the pollen is released. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T05:03:40Z biological_process owl:Class GO:0072761 biolink:NamedThing cellular response to capsazepine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a capsazepine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:47:53Z biological_process owl:Class GO:0010362 biolink:NamedThing negative regulation of anion channel activity by blue light Any process in which blue light stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. tmpzr1t_l9r_go_relaxed.owl negative regulation by blue light of anion channel activity|inhibition by blue light of anion channel activity biological_process owl:Class GO:0010360 biolink:NamedThing negative regulation of anion channel activity Any process that stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033053 biolink:NamedThing D-glutamine metabolic process The chemical reactions and pathways involving D-glutamine, the D-enantiomer of the amino acid glutamine, i.e. (2R)-2,5-diamino-5-oxopentanoic acid. tmpzr1t_l9r_go_relaxed.owl D-glutamine metabolism biological_process owl:Class GO:0046416 biolink:NamedThing D-amino acid metabolic process The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids. tmpzr1t_l9r_go_relaxed.owl D-amino acid metabolism biological_process owl:Class GO:0060080 biolink:NamedThing inhibitory postsynaptic potential A process that causes a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. tmpzr1t_l9r_go_relaxed.owl IPSP|regulation of inhibitory post-synaptic membrane potential biological_process owl:Class GO:0086055 biolink:NamedThing Purkinje myocyte to ventricular cardiac muscle cell communication by electrical coupling The process that mediates signaling interactions between a Purkinje myocyte and a ventricular cardiac muscle cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-17T10:51:59Z biological_process owl:Class GO:0086068 biolink:NamedThing Purkinje myocyte to ventricular cardiac muscle cell communication The process that mediates interactions between a Purkinje myocyte and its surroundings that contributes to the process of the Purkinje myocyte communicating with a ventricular cardiac muscle cell in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T09:14:49Z biological_process owl:Class GO:0005662 biolink:NamedThing DNA replication factor A complex A conserved heterotrimeric complex that binds nonspecifically to single-stranded DNA and is required for multiple processes in eukaryotic DNA metabolism, including DNA replication, DNA repair, and recombination. In all eukaryotic organisms examined the complex is composed of subunits of approximately 70, 30, and 14 kDa. tmpzr1t_l9r_go_relaxed.owl RPA|replication protein A Wikipedia:Replication_protein_A cellular_component owl:Class GO:0019991 biolink:NamedThing septate junction assembly The assembly of a septate junction, an intercellular junction found in invertebrate epithelia that is characterized by a ladder like appearance in electron micrographs and thought to provide structural strength and to provide a barrier to diffusion of solutes through the intercellular space. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120192 biolink:NamedThing tight junction assembly A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a tight junction. A tight junction seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other. tmpzr1t_l9r_go_relaxed.owl occluding junction assembly|occluding cell junction assembly krc 2018-08-14T22:48:05Z biological_process owl:Class GO:1903521 biolink:NamedThing positive regulation of mammary gland involution Any process that activates or increases the frequency, rate or extent of mammary gland involution. tmpzr1t_l9r_go_relaxed.owl upregulation of mammary gland involution|activation of mammary gland involution|up-regulation of mammary gland involution|up regulation of mammary gland involution dph 2014-10-06T12:01:39Z biological_process owl:Class GO:0010403 biolink:NamedThing pectic arabinogalactan I metabolic process The chemical reactions and pathways involving pectic arabinogalactan I, an alpha-(1,4)-linked D-galactopyranose backbone that is substituted with alpha-l-Araf residues via the O-3 of the D-galactose residues. Arabinogalactan I can be found as a side chain of rhamnogalacturonan I. tmpzr1t_l9r_go_relaxed.owl pectic arabinogalactan I metabolism biological_process owl:Class GO:0010400 biolink:NamedThing rhamnogalacturonan I side chain metabolic process The chemical reactions and pathways involving the side chains of the pectin, rhamnogalacturonan I. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan I side chain metabolism biological_process owl:Class GO:0070739 biolink:NamedThing protein-glutamic acid ligase activity Catalysis of the posttranslational transfer of one or more glutamate residues to a specific residue on a target protein. tmpzr1t_l9r_go_relaxed.owl protein glutamylase activity|protein-glutamate ligase activity mah 2009-06-19T02:23:22Z molecular_function owl:Class GO:1902722 biolink:NamedThing positive regulation of prolactin secretion Any process that activates or increases the frequency, rate or extent of prolactin secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of prolactin secretion|upregulation of prolactin secretion|activation of prolactin secretion|up regulation of prolactin secretion mr 2014-02-24T16:09:37Z biological_process owl:Class GO:2000300 biolink:NamedThing regulation of synaptic vesicle exocytosis Any process that modulates the frequency, rate or extent of synaptic vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl dph 2011-01-03T08:20:40Z biological_process owl:Class GO:0120097 biolink:NamedThing glycosylphosphatidylinositol-mannosyltransferase II complex A protein complex that is involved in the transfer of the second mannose to the glycosylphosphatidylinositol (GPI) during GPI precursor assembly. In yeast S. cerevisiae this complex consists of GPI18p and PGA1p. tmpzr1t_l9r_go_relaxed.owl GPI-MT-I complex krc 2017-09-18T20:51:56Z cellular_component owl:Class GO:2001079 biolink:NamedThing beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc binding Binding to beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:15:19Z molecular_function owl:Class GO:0033596 biolink:NamedThing TSC1-TSC2 complex A protein complex consisting of at least tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase (Rheb), and inhibits the TOR signaling pathway. tmpzr1t_l9r_go_relaxed.owl tuberous sclerosis complex|tuberin-hamartin complex cellular_component owl:Class GO:0006054 biolink:NamedThing N-acetylneuraminate metabolic process The chemical reactions and pathways involving N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid. tmpzr1t_l9r_go_relaxed.owl sialic acid metabolic process|sialic acid metabolism|N-acetylneuraminate metabolism biological_process owl:Class GO:0051396 biolink:NamedThing positive regulation of nerve growth factor receptor activity Any process that activates or increases the frequency, rate or extent of the activity of the nerve growth factor (NGF) receptor. tmpzr1t_l9r_go_relaxed.owl stimulation of nerve growth factor receptor activity|upregulation of nerve growth factor receptor activity|positive regulation of NGF receptor activity|activation of nerve growth factor receptor activity|up-regulation of nerve growth factor receptor activity|up regulation of nerve growth factor receptor activity biological_process owl:Class GO:1905585 biolink:NamedThing regulation of outer hair cell apoptotic process Any process that modulates the frequency, rate or extent of outer hair cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of outer hair cell apoptosis|regulation of cochlear outer hair cell apoptosis|regulation of cochlear outer hair cell apoptotic process sl 2016-10-24T22:35:34Z biological_process owl:Class GO:0000389 biolink:NamedThing mRNA 3'-splice site recognition Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome. tmpzr1t_l9r_go_relaxed.owl U2-type nuclear mRNA 3'-splice site recognition|nuclear mRNA 3'-splice site recognition|U12-type nuclear mRNA 3'-splice site recognition GO:0000382|GO:0000383 biological_process owl:Class GO:0102717 biolink:NamedThing DIBOA-glucoside oxygenase activity Catalysis of the reaction: DIBOA-beta-D-glucoside + O2 + 2-oxoglutarate <=> TRIBOA-beta-D-glucoside + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl RHEA:32115|EC:1.14.11.59|MetaCyc:RXN-6685 molecular_function owl:Class GO:0050498 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and the latter donor is dehydrogenated. tmpzr1t_l9r_go_relaxed.owl EC:1.14.20.- molecular_function owl:Class GO:1904927 biolink:NamedThing cellular response to palmitoleic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a palmitoleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2016-01-27T23:07:31Z biological_process owl:Class GO:1900123 biolink:NamedThing regulation of nodal receptor complex assembly Any process that modulates the frequency, rate or extent of nodal receptor complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of nodal receptor complex formation|regulation of ActRIIB.ALK4.EGF-CFC complex formation bf 2012-02-22T04:21:49Z biological_process owl:Class GO:1902287 biolink:NamedThing semaphorin-plexin signaling pathway involved in axon guidance Any semaphorin-plexin signaling pathway that is involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signalling pathway involved in axon growth cone guidance|semaphorin-plexin signalling pathway involved in axon pathfinding|semaphorin-plexin signalling pathway involved in axon chemotaxis|semaphorin-plexin signalling pathway involved in axon guidance|semaphorin-plexin signaling pathway involved in axon pathfinding|semaphorin-plexin signaling pathway involved in axon growth cone guidance|semaphorin-plexin signaling pathway involved in axon chemotaxis pr 2013-07-08T16:07:03Z biological_process owl:Class GO:0071526 biolink:NamedThing semaphorin-plexin signaling pathway A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signalling pathway mah 2010-01-07T03:48:07Z biological_process owl:Class GO:0009446 biolink:NamedThing putrescine biosynthetic process The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl putrescine biosynthesis|putrescine synthesis|putrescine anabolism|putrescine formation biological_process owl:Class GO:2000851 biolink:NamedThing positive regulation of glucocorticoid secretion Any process that activates or increases the frequency, rate or extent of glucocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:44:51Z biological_process owl:Class GO:0042727 biolink:NamedThing flavin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. tmpzr1t_l9r_go_relaxed.owl flavin-containing compound formation|riboflavin and derivative biosynthesis|vitamin B2 and derivative biosynthesis|vitamin B2 and derivative biosynthetic process|flavin-containing compound anabolism|riboflavin and derivative biosynthetic process|flavin-containing compound biosynthesis|flavin-containing compound synthesis biological_process owl:Class GO:0046497 biolink:NamedThing nicotinate nucleotide metabolic process The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinate (pyridine 3-carboxylic acid, or niacin). tmpzr1t_l9r_go_relaxed.owl nicotinate nucleotide metabolism biological_process owl:Class GO:0019362 biolink:NamedThing pyridine nucleotide metabolic process The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. tmpzr1t_l9r_go_relaxed.owl pyridine nucleotide metabolism biological_process owl:Class GO:0051511 biolink:NamedThing negative regulation of unidimensional cell growth Any process that stops, prevents, or reduces the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. tmpzr1t_l9r_go_relaxed.owl downregulation of unidimensional cell growth|down regulation of unidimensional cell growth|down-regulation of unidimensional cell growth|negative regulation of cell elongation|inhibition of unidimensional cell growth biological_process owl:Class GO:0009943 biolink:NamedThing adaxial/abaxial axis specification The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl adaxial/abaxial determination biological_process owl:Class GO:1905351 biolink:NamedThing pericyte cell migration The orderly movement of a pericyte cell from one site to another. tmpzr1t_l9r_go_relaxed.owl rph 2016-08-05T12:01:48Z biological_process owl:Class GO:1901529 biolink:NamedThing positive regulation of anion channel activity Any process that activates or increases the frequency, rate or extent of anion channel activity. tmpzr1t_l9r_go_relaxed.owl upregulation of anion channel activity|up-regulation of anion channel activity|up regulation of anion channel activity|activation of anion channel activity tb 2012-10-23T23:38:50Z biological_process owl:Class GO:0008139 biolink:NamedThing nuclear localization sequence binding Binding to a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear localisation sequence binding|nuclear localization signal binding|NLS binding molecular_function owl:Class GO:0150078 biolink:NamedThing positive regulation of neuroinflammatory response Any process that activates or increases the frequency, rate or extent of neuroinflammatory response. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-26T12:35:50Z biological_process owl:Class GO:1900562 biolink:NamedThing dehydroaustinol catabolic process The chemical reactions and pathways resulting in the breakdown of dehydroaustinol. tmpzr1t_l9r_go_relaxed.owl dehydroaustinol degradation|dehydroaustinol breakdown|dehydroaustinol catabolism di 2012-05-15T06:27:55Z biological_process owl:Class GO:0050185 biolink:NamedThing phosphatidylinositol deacylase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + H(2)O = 1-acyl-sn-glycero-3-phospho-D-myo-inositol + a carboxylate + H(+). tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-D-myo-inositol 2-acylhydrolase activity|phosphatidylinositol phospholipase A2 activity KEGG_REACTION:R03360|MetaCyc:PHOSPHATIDYLINOSITOL-DEACYLASE-RXN|EC:3.1.1.52|RHEA:18001 molecular_function owl:Class GO:0014868 biolink:NamedThing cross bridge cycling involved in regulation of the velocity of shortening in skeletal muscle contraction A process in which cross bridges are broken and reformed during filament sliding as part of the regulation of the velocity of shortening in skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014880 biolink:NamedThing regulation of muscle filament sliding involved in regulation of the velocity of shortening in skeletal muscle contraction Any process that modulates the frequency, rate or extent of muscle filament sliding, and consequently contributes to the regulation of the velocity of shortening of skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043547 biolink:NamedThing positive regulation of GTPase activity Any process that activates or increases the activity of a GTPase. tmpzr1t_l9r_go_relaxed.owl stimulation of Ran GTPase activity|up-regulation of Cdc42 GTPase activity|up-regulation of Rho GTPase activity|upregulation of Ran GTPase activity|up-regulation of Rab GTPase activity|stimulation of ARF GTPase activity|stimulation of Rho GTPase activity|up-regulation of Ran GTPase activity|up-regulation of Ras GTPase activity|up regulation of Rab GTPase activity|up regulation of Rap GTPase activity|upregulation of GTPase activity|upregulation of Cdc42 GTPase activity|stimulation of Cdc42 GTPase activity|positive regulation of Ral GTPase activity|stimulation of GTPase activity|up regulation of GTPase activity|stimulation of Rab GTPase activity|upregulation of Rab GTPase activity|positive regulation of ARF GTPase activity|positive regulation of Rab GTPase activity|up-regulation of Ral GTPase activity|up regulation of Ras GTPase activity|positive regulation of Rho GTPase activity|up-regulation of GTPase activity|stimulation of Rap GTPase activity|upregulation of Rho GTPase activity|positive regulation of Ras GTPase activity|upregulation of ARF GTPase activity|up-regulation of Rac GTPase activity|up-regulation of Rap GTPase activity|up-regulation of ARF GTPase activity|up regulation of Rho GTPase activity|upregulation of Ras GTPase activity|positive regulation of Ran GTPase activity|up regulation of Ral GTPase activity|stimulation of Ral GTPase activity|activation of GTPase activity|positive regulation of Cdc42 GTPase activity|stimulation of Rac GTPase activity|up regulation of ARF GTPase activity|positive regulation of Rac GTPase activity|positive regulation of Rap GTPase activity|up regulation of Ran GTPase activity|upregulation of Rap GTPase activity|upregulation of Rac GTPase activity|up regulation of Cdc42 GTPase activity|upregulation of Ral GTPase activity|stimulation of Ras GTPase activity|up regulation of Rac GTPase activity GO:0032321|GO:0032851|GO:0032855|GO:0032320|GO:0032850|GO:0043089|GO:0032852|GO:0032854|GO:0032853 biological_process owl:Class GO:0140443 biolink:NamedThing mitochondrion-plasma membrane adaptor activity The binding activity of a molecule that brings together a mitochondrion and a plasma membrane either via membrane lipid binding or by interacting with a mitochondrial outer membrane protein, to establish or maintain the localization of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrion plasma membrane tether activity|mitochondrion plasma membrane adaptor activity|plasma membrane-mitochondrion tether activity|plasma membrane-mitochondrion adaptor activity https://github.com/geneontology/go-ontology/pull/19140 pg 2020-03-24T13:11:20Z molecular_function owl:Class GO:0030055 biolink:NamedThing cell-substrate junction A cell junction that forms a connection between a cell and the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl cell-matrix junction cellular_component owl:Class GO:0070161 biolink:NamedThing anchoring junction A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl anchoring cell junction cellular_component owl:Class GO:0072211 biolink:NamedThing metanephric pyramids development The process whose specific outcome is the progression of the metanephric pyramids over time, from their formation to the mature structures. Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts. tmpzr1t_l9r_go_relaxed.owl metanephric kidney pyramid development|metanephric pyramid development|metanephric renal medulla development|metanephric renal pyramid development mah 2010-03-18T01:04:51Z biological_process owl:Class GO:0050998 biolink:NamedThing nitric-oxide synthase binding Binding to nitric-oxide synthase. tmpzr1t_l9r_go_relaxed.owl NOS binding molecular_function owl:Class GO:1901697 biolink:NamedThing olivetolic acid biosynthetic process The chemical reactions and pathways resulting in the formation of olivetolic acid. tmpzr1t_l9r_go_relaxed.owl olivetolic acid formation|olivetolic acid biosynthesis|olivetolic acid synthesis|olivetolic acid anabolism ms 2012-12-13T08:07:51Z biological_process owl:Class GO:2000933 biolink:NamedThing regulation of cellotriose metabolic process Any process that modulates the frequency, rate or extent of cellotriose metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellotriose metabolism tt 2011-08-01T12:44:15Z biological_process owl:Class GO:0060253 biolink:NamedThing negative regulation of glial cell proliferation Any process that stops or decreases the rate or extent of glial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019258 biolink:NamedThing 4-nitrotoluene catabolic process The chemical reactions and pathways resulting in the breakdown of 4-nitrotoluene, 1-methyl-4-nitrobenzene. tmpzr1t_l9r_go_relaxed.owl 4NT catabolic process|4-nitrotoluene breakdown|4-nitrotoluene catabolism|4-nitrotoluene degradation|4NT catabolism MetaCyc:P421-PWY biological_process owl:Class GO:0019257 biolink:NamedThing 4-nitrotoluene metabolic process The chemical reactions and pathways involving 4-nitrotoluene, 1-methyl-4-nitrobenzene. It is a light yellow liquid with a weak aromatic odor. tmpzr1t_l9r_go_relaxed.owl 4-nitrotoluene metabolism|4NT metabolic process|4NT metabolism biological_process owl:Class GO:0002652 biolink:NamedThing regulation of tolerance induction dependent upon immune response Any process that modulates the frequency, rate, or extent of tolerance induction dependent upon immune response. tmpzr1t_l9r_go_relaxed.owl regulation of immune response-dependent tolerance induction biological_process owl:Class GO:0021980 biolink:NamedThing subpallium cell migration The orderly movement of cells from one site to another in the subpallium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003986 biolink:NamedThing acetyl-CoA hydrolase activity Catalysis of the reaction: acetyl-CoA + H(2)O = acetate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA deacylase activity|acetyl coenzyme A acylase activity|acetyl coenzyme A deacylase activity|acetyl-CoA thiol esterase activity|acetyl coenzyme A hydrolase activity|acetyl-CoA acylase activity Reactome:R-HSA-390304|KEGG_REACTION:R00227|MetaCyc:ACETYL-COA-HYDROLASE-RXN|Reactome:R-HSA-2066779|RHEA:20289|EC:3.1.2.1 molecular_function owl:Class GO:0051961 biolink:NamedThing negative regulation of nervous system development Any process that stops, prevents, or reduces the frequency, rate or extent of nervous system development, the origin and formation of nervous tissue. tmpzr1t_l9r_go_relaxed.owl inhibition of nervous system development|down-regulation of nervous system development|down regulation of nervous system development|downregulation of nervous system development biological_process owl:Class GO:1903721 biolink:NamedThing positive regulation of I-kappaB phosphorylation Any process that activates or increases the frequency, rate or extent of I-kappaB phosphorylation. tmpzr1t_l9r_go_relaxed.owl up-regulation of IKB phosphorylation|activation of IkappaB phosphorylation|activation of I-kappaB phosphorylation|positive regulation of IkappaB phosphorylation|upregulation of IkappaB phosphorylation|activation of inhibitor of kappaB phosphorylation|up regulation of inhibitor of kappaB phosphorylation|activation of IKB phosphorylation|up-regulation of inhibitor of kappaB phosphorylation|up regulation of IKB phosphorylation|positive regulation of inhibitor of kappaB phosphorylation|up regulation of I-kappaB phosphorylation|upregulation of inhibitor of NF-kappaB phosphorylation|upregulation of inhibitor of kappaB phosphorylation|upregulation of IKB phosphorylation|up-regulation of inhibitor of NF-kappaB phosphorylation|up-regulation of IkappaB phosphorylation|up-regulation of I-kappaB phosphorylation|activation of inhibitor of NF-kappaB phosphorylation|positive regulation of IKB phosphorylation|upregulation of I-kappaB phosphorylation|up regulation of IkappaB phosphorylation|up regulation of inhibitor of NF-kappaB phosphorylation|positive regulation of inhibitor of NF-kappaB phosphorylation lb 2014-12-08T15:45:25Z biological_process owl:Class GO:1903719 biolink:NamedThing regulation of I-kappaB phosphorylation Any process that modulates the frequency, rate or extent of I-kappaB phosphorylation. tmpzr1t_l9r_go_relaxed.owl regulation of inhibitor of NF-kappaB phosphorylation|regulation of inhibitor of kappaB phosphorylation|regulation of IKB phosphorylation|regulation of IkappaB phosphorylation lb 2014-12-08T15:45:07Z biological_process owl:Class GO:1902230 biolink:NamedThing negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA damage response, signal transduction resulting in induction of apoptosis|down regulation of intrinsic apoptotic signaling pathway in response to DNA damage|inhibition of intrinsic apoptotic signaling pathway in response to DNA damage|down-regulation of DNA damage response, signal transduction resulting in induction of apoptosis|downregulation of intrinsic apoptotic signaling pathway in response to DNA damage|downregulation of DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of DNA damage response, signal transduction resulting in induction of apoptosis|down regulation of DNA damage response, signal transduction resulting in induction of apoptosis|down-regulation of intrinsic apoptotic signaling pathway in response to DNA damage rl 2013-06-14T09:39:58Z biological_process owl:Class GO:0044507 biolink:NamedThing positive regulation of receptor activity in other organism A process that activates or increases the frequency, rate or extent of the activity of a receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T04:31:52Z biological_process owl:Class GO:0002335 biolink:NamedThing mature B cell differentiation The process in which transitional stage B cells acquire the specialized features of mature B cells in the spleen. tmpzr1t_l9r_go_relaxed.owl mature B-cell differentiation|mature cell development|mature B lymphocyte differentiation|mature B-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0120303 biolink:NamedThing visually-mediated background adaptation Any process in which an organism changes its pigmentation (lightening in response to a brighter environment or darkening in response to a dimmer environment) in response to a change in light intensity detected by melanopsin-expressing eye cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20524 krc 2021-02-09T18:35:11Z biological_process owl:Class GO:1901184 biolink:NamedThing regulation of ERBB signaling pathway Any process that modulates the frequency, rate or extent of ERBB signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of EGF receptor family signaling pathway|regulation of ErbB signaling|regulation of ERBB signalling pathway|regulation of EGFR family signaling pathway rl 2012-07-24T07:37:11Z biological_process owl:Class GO:0048784 biolink:NamedThing pigment biosynthetic process involved in pigment granule maturation The chemical reactions and pathways resulting in the formation of a pigment, contributing to the process in which a membrane-bounded organelle develops into a pigment granule. Maturation is a developmental process, independent of morphogenetic (shape) change, that is required for a cell or structure to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl pigment biosynthetic process during pigment granule maturation biological_process owl:Class GO:0102797 biolink:NamedThing geranial:oxygen oxidoreductase activity Catalysis of the reaction: geranial + O2 + H2O = H+ + geranate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8093|EC:1.2.3.1 molecular_function owl:Class GO:1904299 biolink:NamedThing negative regulation of transcytosis Any process that stops, prevents or reduces the frequency, rate or extent of transcytosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of transcytosis|down regulation of transcytosis|downregulation of transcytosis|inhibition of transcytosis sl 2015-06-09T22:53:32Z biological_process owl:Class GO:0010340 biolink:NamedThing carboxyl-O-methyltransferase activity Catalysis of the transfer of a methyl group to the carboxyl group of an acceptor molecule to form a methyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900353 biolink:NamedThing positive regulation of methanofuran biosynthetic process Any process that activates or increases the frequency, rate or extent of methanofuran biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of methanofuran biosynthesis|activation of methanofuran biosynthetic process|positive regulation of methanofuran biosynthesis|upregulation of methanofuran biosynthetic process|upregulation of methanofuran biosynthesis|up regulation of methanofuran biosynthetic process|activation of methanofuran biosynthesis|up-regulation of methanofuran biosynthesis|up-regulation of methanofuran biosynthetic process tt 2012-04-06T02:14:09Z biological_process owl:Class GO:1900351 biolink:NamedThing regulation of methanofuran biosynthetic process Any process that modulates the frequency, rate or extent of methanofuran biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of methanofuran biosynthesis tt 2012-04-06T02:13:51Z biological_process owl:Class GO:0043246 biolink:NamedThing megasome Large, cysteine proteinase rich lysosomes, often found in the amastigote (an intracytoplasmic, nonflagellated form of the parasite) stage of Leishmania species belonging to the mexicana complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047624 biolink:NamedThing adenosine-tetraphosphatase activity Catalysis of the reaction: adenosine 5'-tetraphosphate + H2O = ATP + phosphate. tmpzr1t_l9r_go_relaxed.owl adenosine-tetraphosphate phosphohydrolase activity MetaCyc:ADENOSINE-TETRAPHOSPHATASE-RXN|RHEA:24500|EC:3.6.1.14 molecular_function owl:Class GO:0003217 biolink:NamedThing cardiac right atrium formation The developmental process pertaining to the initial formation of a cardiac right atrium from unspecified parts. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:53:12Z biological_process owl:Class GO:0003210 biolink:NamedThing cardiac atrium formation The developmental process pertaining to the initial formation of a cardiac atrium from unspecified parts. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:44:25Z biological_process owl:Class GO:0080136 biolink:NamedThing priming of cellular response to stress The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl priming of response to stress|priming of stress response dhl 2009-05-06T05:05:15Z biological_process owl:Class GO:1990377 biolink:NamedThing organomineral extracellular matrix An extracellular matrix consisting of a densely packed organomineral assembly in which the mineral phase represents the majority of the material by weight. tmpzr1t_l9r_go_relaxed.owl An example is found in shell calcitic prisms of the Mediterranean fan mussel Pinna nobilis (PMID:15994301), but the term may also be useful to annotate bone and eggshell proteins. pr 2014-05-07T10:02:28Z cellular_component owl:Class GO:0002323 biolink:NamedThing natural killer cell activation involved in immune response The change in morphology and behavior of a natural killer cell resulting from exposure a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl natural killer cell activation during immune response|NK cell activation during immune response biological_process owl:Class GO:0052018 biolink:NamedThing modulation by symbiont of RNA levels in host The alteration by an organism of the levels of RNA in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host RNA levels biological_process owl:Class GO:0102056 biolink:NamedThing 11-hydroxyjasmonate sulfotransferase activity Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + an 11-hydroxyjasmonate <=> adenosine 3',5'-bismonophosphate + H+ + an 11-hydroxyjasmonate sulfate. tmpzr1t_l9r_go_relaxed.owl RHEA:52732|MetaCyc:RXN-10453|EC:2.8.2.39 molecular_function owl:Class GO:1900782 biolink:NamedThing fumiquinazoline F metabolic process The chemical reactions and pathways involving fumiquinazoline F. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline F metabolism di 2012-06-04T09:31:06Z biological_process owl:Class GO:0033249 biolink:NamedThing positive regulation of penicillin catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl positive regulation of penicillin breakdown|positive regulation of penicillin catabolism|positive regulation of penicillin degradation biological_process owl:Class GO:1900307 biolink:NamedThing negative regulation of maltoheptaose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltoheptaose transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of maltoheptaose transport|down regulation of maltoheptaose transport|inhibition of maltoheptaose transport|downregulation of maltoheptaose transport tt 2012-04-05T07:58:27Z biological_process owl:Class GO:0005469 biolink:NamedThing succinate:fumarate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: succinate(out) + fumarate(in) = succinate(in) + fumarate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015141 biolink:NamedThing succinate transmembrane transporter activity Enables the transfer of succinate, the dianion of ethane dicarboxylic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl dicarboxylate (succinate/fumarate/malate) antiporter activity molecular_function owl:Class GO:0045957 biolink:NamedThing negative regulation of complement activation, alternative pathway Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the alternative pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of complement activation, alternative pathway|down-regulation of complement activation, alternative pathway|down regulation of complement activation, alternative pathway|negative regulation of complement cascade, alternative pathway|inhibition of complement activation, alternative pathway biological_process owl:Class GO:0044097 biolink:NamedThing secretion by the type IV secretion system The controlled release of proteins or DNA by a cell, via the type IV secretion system. tmpzr1t_l9r_go_relaxed.owl secretion via the type IV secretion system jl 2009-06-09T02:20:34Z biological_process owl:Class GO:0045698 biolink:NamedThing negative regulation of synergid differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of synergid cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of synergid differentiation|downregulation of synergid differentiation|down regulation of synergid differentiation|negative regulation of synergid cell differentiation|inhibition of synergid differentiation biological_process owl:Class GO:0031419 biolink:NamedThing cobalamin binding Binding to cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. tmpzr1t_l9r_go_relaxed.owl vitamin B12 binding molecular_function owl:Class GO:0043899 biolink:NamedThing phosphoserine:homoserine phosphotransferase activity Catalysis of the transfer of a phosphoryl group from phosphoserine to homoserine to form phosphohomoserine. tmpzr1t_l9r_go_relaxed.owl thrH molecular_function owl:Class GO:1902848 biolink:NamedThing negative regulation of neuronal signal transduction Any process that stops, prevents or reduces the frequency, rate or extent of neuronal signal transduction. tmpzr1t_l9r_go_relaxed.owl down-regulation of neuronal signal transduction|inhibition of neuronal signal transduction|downregulation of neuronal signal transduction|down regulation of neuronal signal transduction sjp 2014-04-02T10:11:18Z biological_process owl:Class GO:0102305 biolink:NamedThing (13E)-labda-7,13-dien-15-ol synthase activity Catalysis of the reaction: 2-cis,6-trans,10-trans-geranylgeranyl diphosphate + H2O <=> (13E)-labda-7,13-dien-15-ol + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:3.1.7.10|RHEA:32075|MetaCyc:RXN-12892 molecular_function owl:Class GO:0016794 biolink:NamedThing diphosphoric monoester hydrolase activity Catalysis of the hydrolysis of a diphosphoester to give a diphosphate group and a free hydroxyl group. tmpzr1t_l9r_go_relaxed.owl EC:3.1.7.- molecular_function owl:Class GO:0044859 biolink:NamedThing protein insertion into plasma membrane raft The process in which a protein is incorporated into a plasma membrane raft. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:23:20Z biological_process owl:Class GO:0046485 biolink:NamedThing ether lipid metabolic process The chemical reactions and pathways involving ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol. tmpzr1t_l9r_go_relaxed.owl ether lipid metabolism|plasmalogen metabolic process Wikipedia:Ether_lipid biological_process owl:Class GO:1901979 biolink:NamedThing regulation of inward rectifier potassium channel activity Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of Kir channel activity tb 2013-03-12T18:21:12Z biological_process owl:Class GO:0050400 biolink:NamedThing xylitol kinase activity Catalysis of the reaction: ATP + xylitol = ADP + 2 H(+) + xylitol 5-phosphate. tmpzr1t_l9r_go_relaxed.owl xylitol phosphotransferase activity|ATP:xylitol 5-phosphotransferase activity KEGG_REACTION:R02136|MetaCyc:XYLITOL-KINASE-RXN|EC:2.7.1.122|RHEA:20209 molecular_function owl:Class GO:0048694 biolink:NamedThing positive regulation of collateral sprouting of injured axon Any process that activates, maintains or increases the rate of collateral sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl up-regulation of collateral sprouting of injured axon|up regulation of collateral sprouting of injured axon|upregulation of collateral sprouting of injured axon|stimulation of collateral sprouting of injured axon|activation of collateral sprouting of injured axon biological_process owl:Class GO:0030091 biolink:NamedThing protein repair The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097212 biolink:NamedThing lysosomal membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosomal membrane. A lysosomal membrane is the lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl lysosomal membrane organisation|lysosome membrane organization pr 2012-01-12T10:16:15Z biological_process owl:Class GO:0032125 biolink:NamedThing micronucleus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the micronucleus. tmpzr1t_l9r_go_relaxed.owl micronuclear organization|micronuclear organization and biogenesis|micronucleus organisation biological_process owl:Class GO:0046438 biolink:NamedThing D-cysteine metabolic process The chemical reactions and pathways involving D-cysteine, (S)-2-amino-3-mercaptopropanoic acid, which occurs naturally in firefly luciferin. tmpzr1t_l9r_go_relaxed.owl D-cysteine metabolism biological_process owl:Class GO:0005657 biolink:NamedThing replication fork The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. tmpzr1t_l9r_go_relaxed.owl replication focus Wikipedia:Replication_fork cellular_component owl:Class GO:0036200 biolink:NamedThing 3-ketosteroid 9-alpha-monooxygenase activity Catalysis of the reaction: androsta-1,4-diene-3,17-dione + NADH + H+ + O2 = 9alpha-hydroxyandrosta-1,4-diene-3,17-dione + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl 3-ketosteroid 9alpha-hydroxylase activity|KshAB activity EC:1.14.15.30|KEGG_REACTION:R09860|RHEA:32199 bf 2012-04-20T02:09:47Z molecular_function owl:Class GO:0042164 biolink:NamedThing interleukin-12 alpha subunit binding Binding to the alpha subunit of interleukin-12. tmpzr1t_l9r_go_relaxed.owl CLMFp35 binding|IL-12A binding|IL-12p35 binding|NKSFp35 binding molecular_function owl:Class GO:0031122 biolink:NamedThing cytoplasmic microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell. tmpzr1t_l9r_go_relaxed.owl cytoplasmic microtubule organisation|cytoplasmic microtubule organization and biogenesis biological_process owl:Class GO:0097435 biolink:NamedThing supramolecular fiber organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a supramolecular fiber, a polymer consisting of an indefinite number of protein or protein complex subunits that have polymerised to form a fiber-shaped structure. tmpzr1t_l9r_go_relaxed.owl extracellular fibril organisation|fibril organization|extracellular fibril organization|extracellular fibril organization and biogenesis|fibril organisation pr 2012-11-27T15:46:25Z GO:0043206 biological_process owl:Class GO:0097346 biolink:NamedThing INO80-type complex A chromatin remodeling protein complex initially purified from S. cerevisiae and containing more than 10 subunits, including the SWR1-related complexes. INO80 (inositol requiring 80)-type complexes have diverse functions, including promoting transcriptional activation and DNA repair. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-20T11:26:55Z cellular_component owl:Class GO:1903565 biolink:NamedThing negative regulation of protein localization to cilium Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cilium. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localization to cilium|downregulation of protein localization to cilium|down-regulation of protein localization to cilium|inhibition of protein localization to cilium krc 2014-10-24T20:58:20Z biological_process owl:Class GO:1903828 biolink:NamedThing negative regulation of protein localization Any process that stops, prevents or reduces the frequency, rate or extent of a protein localization. tmpzr1t_l9r_go_relaxed.owl downregulation of cellular protein localization|inhibition of cellular protein localisation|down regulation of cellular protein localisation|down-regulation of cellular protein localization|inhibition of cellular protein localization|negative regulation of cellular protein localisation|downregulation of cellular protein localisation|negative regulation of cellular protein localization|down regulation of cellular protein localization|down-regulation of cellular protein localisation https://github.com/geneontology/go-ontology/issues/22021 jl 2015-01-20T14:32:24Z biological_process owl:Class GO:0006863 biolink:NamedThing purine nucleobase transport The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl purine base transport|purine transmembrane transport|purine base transmembrane transport|purine transport GO:0015852 biological_process owl:Class GO:2000944 biolink:NamedThing positive regulation of amylopectin metabolic process Any process that activates or increases the frequency, rate or extent of amylopectin metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of Amylopectin metabolism tt 2011-08-01T02:10:36Z biological_process owl:Class GO:0071083 biolink:NamedThing alphaV-beta3 integrin-CD47-FCER2 complex A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface protein CD47 and the low-affinity immunoglobulin epsilon Fc receptor (FCER2). tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-CD447-FCER2 complex mah 2009-11-06T04:44:20Z cellular_component owl:Class GO:0106103 biolink:NamedThing COPII vesicles tethering complex A protein complex that resides in the cis-golgi membrane and plays a role in the tethering of COPII vesicles, through an interaction with vesicle tethering proteins (p115 in H. Sapiens and Uso1 S. cerevisiae), granting the cis-Golgi and endoplasmic reticulum to Golgi vesicle-mediated transport. It is composed by GRASP65 and GM130 protein in H. sapiens and by Bug1 and Grh1 proteins in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl GRASP65-GM130 complex|Bug1-Grh1 complex hjd 2018-02-15T23:36:12Z cellular_component owl:Class GO:0060169 biolink:NamedThing negative regulation of adenosine receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl negative regulation of adenosine receptor signalling pathway biological_process owl:Class GO:0018985 biolink:NamedThing pronuclear envelope synthesis Synthesis and ordering of the envelope of pronuclei. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990487 biolink:NamedThing anaerobic lignin catabolic process The chemical reactions and pathways resulting in the breakdown of lignin in the absence of oxygen. Lignin is a class of polymers of phenylpropanoid units. tmpzr1t_l9r_go_relaxed.owl anaerobic lignin degradation tt 2014-09-20T17:35:09Z biological_process owl:Class GO:0046274 biolink:NamedThing lignin catabolic process The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. tmpzr1t_l9r_go_relaxed.owl lignin degradation|lignin catabolism|lignin breakdown biological_process owl:Class GO:0001786 biolink:NamedThing phosphatidylserine binding Binding to phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008989 biolink:NamedThing rRNA (guanine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N1-methylguanine. tmpzr1t_l9r_go_relaxed.owl ribosomal ribonucleate guanine 1-methyltransferase activity|S-adenosyl-L-methionine:rRNA (guanine-1-N-)-methyltransferase activity|S-adenosyl-L-methionine:rRNA (guanine-N1-)-methyltransferase activity MetaCyc:RRNA-GUANINE-N1--METHYLTRANSFERASE-RXN molecular_function owl:Class GO:1990441 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress|down regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress|down-regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress|suppression of transcription from RNA polymerase II promoter under ER stress|repression of transcription from RNA polymerase II promoter under ER stress|reduction of transcription from RNA polymerase II promoter under ER stress|ER stress-induced negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter in response to ER stress bf 2014-07-31T13:08:54Z biological_process owl:Class GO:0050455 biolink:NamedThing columbamine oxidase activity Catalysis of the reaction: 2 columbamine + O(2) = 2 berberine + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl columbamine:oxygen oxidoreductase (cyclizing)|berberine synthase activity RHEA:23564|MetaCyc:COLUMBAMINE-OXIDASE-RXN|EC:1.21.3.2|KEGG_REACTION:R00044 molecular_function owl:Class GO:0043792 biolink:NamedThing enamidase activity Catalysis of the reaction: 1,4,5,6-tetrahydro-6-oxonicotinate + 2 H(2)O = 2-formylglutarate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 6-oxo-1,4,5,6-tetrahydronicotinate amidohydrolase activity EC:3.5.2.18|RHEA:17209|MetaCyc:3.5.2.18-RXN|KEGG_REACTION:R07984 molecular_function owl:Class GO:1900343 biolink:NamedThing negative regulation of methane biosynthetic process from dimethyl sulfide Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide. tmpzr1t_l9r_go_relaxed.owl downregulation of methane biosynthetic process from dimethyl sulfide|down regulation of methane biosynthetic process from dimethyl sulfide|down-regulation of methane biosynthetic process from dimethyl sulfide|inhibition of methane biosynthetic process from dimethyl sulfide tt 2012-04-06T02:06:47Z biological_process owl:Class GO:1900342 biolink:NamedThing regulation of methane biosynthetic process from dimethyl sulfide Any process that modulates the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:06:38Z biological_process owl:Class GO:0051621 biolink:NamedThing regulation of norepinephrine uptake Any process that modulates the frequency, rate or extent of the directed movement of the neurotransmitter norepinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of norepinephrine import|regulation of noradrenaline uptake|regulation of levarterenol uptake biological_process owl:Class GO:1904760 biolink:NamedThing regulation of myofibroblast differentiation Any process that modulates the frequency, rate or extent of myofibroblast differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of myofibroblast cell differentiation rph 2015-10-23T12:15:05Z biological_process owl:Class GO:0008506 biolink:NamedThing sucrose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + H+(out) = sucrose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl sucrose:hydrogen symporter activity|hydrogen/sucrose transporter activity molecular_function owl:Class GO:1905064 biolink:NamedThing negative regulation of vascular associated smooth muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of vascular smooth muscle cell differentiation|inhibition of VSMC differentiation|down-regulation of vascular associated smooth muscle cell differentiation|down regulation of VSMC differentiation|negative regulation of VSMC differentiation|inhibition of vascular associated smooth muscle cell differentiation|down regulation of vascular smooth muscle cell differentiation|down-regulation of VSMC differentiation|negative regulation of vascular smooth muscle cell differentiation|inhibition of vascular smooth muscle cell differentiation|down regulation of vascular associated smooth muscle cell differentiation|downregulation of vascular associated smooth muscle cell differentiation|downregulation of VSMC differentiation|downregulation of vascular smooth muscle cell differentiation rph 2016-03-21T11:15:03Z biological_process owl:Class GO:1902738 biolink:NamedThing regulation of chondrocyte differentiation involved in endochondral bone morphogenesis Any process that modulates the rate, frequency, or extent of the process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the development of a bone. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl mr 2014-02-26T15:36:15Z biological_process owl:Class GO:0062225 biolink:NamedThing negative regulation of somatic muscle development Any process that decreases the rate, frequency or extent of somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-13T19:06:27Z biological_process owl:Class GO:0018966 biolink:NamedThing styrene metabolic process The chemical reactions and pathways involving styrene, an aromatic hydrocarbon liquid soluble in ether and alcohol. When heated, exposed to light or added to a peroxide catalyst, it undergoes polymerization to form polystyrene, a versatile material used in the manufacture of plastics, synthetic rubber, thermal insulation, and packaging. Styrene is a classified mutagen and a suspected carcinogen. tmpzr1t_l9r_go_relaxed.owl styrene metabolism UM-BBD_pathwayID:sty biological_process owl:Class GO:0021840 biolink:NamedThing directional guidance of interneurons involved in migration from the subpallium to the cortex The creation and reception of signals that control the direction of migration of interneurons as a component of the process of migration from the subpallium to the cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060436 biolink:NamedThing bronchiole morphogenesis The process in which a bronchiole is generated and organized. A bronchiole is the first airway branch that no longer contains cartilage; it is a branch of the bronchi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046941 biolink:NamedThing azetidine-2-carboxylic acid acetyltransferase activity Catalysis of the reaction: L-azetidine-2-carboxylic acid + acetyl-CoA = CoA-SH + N-acetyl azetidine-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010343 biolink:NamedThing singlet oxygen-mediated programmed cell death Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. tmpzr1t_l9r_go_relaxed.owl light-dependent programmed cell death|programmed cell death in response to singlet oxygen biological_process owl:Class GO:0072012 biolink:NamedThing glomerulus vasculature development The biological process whose specific outcome is the progression of a glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the glomerulus vasculature and ends with the mature structure. The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus. tmpzr1t_l9r_go_relaxed.owl glomerulus capillary development mah 2010-01-25T02:05:04Z biological_process owl:Class GO:0070503 biolink:NamedThing selenium-containing prosthetic group metabolic process The chemical reactions and pathways involving a prosthetic group that contains selenium, as in the selenium-dependent molybdenum hydroxylases. The selenium atom in the prosthetic group is required for enzymatic function but is labile to a variety of treatments. tmpzr1t_l9r_go_relaxed.owl selenium-containing prosthetic group metabolism biological_process owl:Class GO:0010088 biolink:NamedThing phloem development The formation of the principal food-conducting tissue of a vascular plant. tmpzr1t_l9r_go_relaxed.owl phloem histogenesis biological_process owl:Class GO:0044525 biolink:NamedThing peptidyl-cystine sulfhydration The modification of a peptidyl-cystine residue in a protein by the addition of sulfur, to form peptidyl-cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T09:44:07Z biological_process owl:Class GO:1903940 biolink:NamedThing negative regulation of TORC2 signaling Any process that stops, prevents or reduces the frequency, rate or extent of TORC2 signaling. tmpzr1t_l9r_go_relaxed.owl downregulation of TORC2 signal transduction|down regulation of TORC2 signaling|negative regulation of TORC2 signal transduction|inhibition of TORC2 signaling|downregulation of TORC2 signaling|down-regulation of TORC2 signaling|down regulation of TORC2 signal transduction|inhibition of TORC2 signal transduction|down-regulation of TORC2 signal transduction al 2015-02-16T18:28:50Z biological_process owl:Class GO:1990553 biolink:NamedThing mitochondrial 5'-adenylyl sulfate transmembrane transport The process in which 5'-adenylyl sulfate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:32:01Z biological_process owl:Class GO:0061881 biolink:NamedThing positive regulation of anterograde axonal transport of mitochondrion Any process that activates or increasesthe frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse. tmpzr1t_l9r_go_relaxed.owl positive regulation of anterograde axon transport of mitochondria dph 2017-05-30T14:21:08Z biological_process owl:Class GO:0031361 biolink:NamedThing integral component of thylakoid membrane The component of the thylakoid membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to thylakoid membrane cellular_component owl:Class GO:0046608 biolink:NamedThing carotenoid isomerase activity Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032024 biolink:NamedThing positive regulation of insulin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of insulin. tmpzr1t_l9r_go_relaxed.owl activation of insulin secretion|upregulation of insulin secretion|stimulation of insulin secretion|up regulation of insulin secretion|up-regulation of insulin secretion biological_process owl:Class GO:0075229 biolink:NamedThing negative regulation of encysted zoospore germination Any process that stops, prevents, or reduces the frequency, rate or extent of encysted zoospore germination. tmpzr1t_l9r_go_relaxed.owl negative regulation of encysted zoospore germination on or near host biological_process owl:Class GO:1904057 biolink:NamedThing negative regulation of sensory perception of pain Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. tmpzr1t_l9r_go_relaxed.owl down regulation of perception of physiological pain|negative regulation of nociception|inhibition of sensory perception of pain|downregulation of nociception|down regulation of nociception|down-regulation of sensory perception of pain|negative regulation of perception of physiological pain|downregulation of sensory perception of pain|inhibition of nociception|down regulation of sensory perception of pain|down-regulation of nociception|down-regulation of perception of physiological pain|inhibition of perception of physiological pain|downregulation of perception of physiological pain sl 2015-03-18T20:33:57Z biological_process owl:Class GO:1905231 biolink:NamedThing cellular response to borneol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a borneol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T17:18:44Z biological_process owl:Class GO:1905230 biolink:NamedThing response to borneol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a borneol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T17:18:36Z biological_process owl:Class GO:0015760 biolink:NamedThing glucose-6-phosphate transport The directed movement of glucose-6-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044805 biolink:NamedThing late nucleophagy A type of nucleophagy, distinct from piecemeal microautophagy of the nucleus (PNM) where the nuclear material is delivered to the vacuole/lysosome for breakdown and recycling later than observed for PNM. tmpzr1t_l9r_go_relaxed.owl LN jl 2013-09-10T15:58:23Z biological_process owl:Class GO:0044804 biolink:NamedThing autophagy of nucleus A form of autophagy, by which damaged or non-essential parts of the nucleus, or even an entire nucleus is degraded. tmpzr1t_l9r_go_relaxed.owl nucleus degradation|nucleophagy jl 2013-09-10T15:50:25Z biological_process owl:Class GO:1903502 biolink:NamedThing translation repressor complex A protein complex which is capable of translation repressor activity. tmpzr1t_l9r_go_relaxed.owl An example of this is Eif4e in drome (P48598) in PMID:14723848 (inferred from physical interaction). bhm 2014-09-30T12:44:27Z cellular_component owl:Class GO:0031086 biolink:NamedThing nuclear-transcribed mRNA catabolic process, deadenylation-independent decay A pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of steps that is independent of deadenylation, but requires decapping followed by transcript decay, and that can regulate mRNA stability. tmpzr1t_l9r_go_relaxed.owl mRNA catabolism, deadenylation-independent decay|deadenylylation-independent mRNA decay|mRNA catabolism, deadenylation-independent|mRNA catabolism, deadenylylation-independent|mRNA degradation, deadenylation-independent decay|mRNA breakdown, deadenylation-independent decay|mRNA catabolic process, deadenylylation-independent|mRNA catabolic process, deadenylation-independent|deadenylation-independent mRNA decay|nuclear mRNA catabolic process, deadenylation-independent decay biological_process owl:Class GO:0000956 biolink:NamedThing nuclear-transcribed mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA degradation|nuclear mRNA catabolism|nuclear mRNA breakdown biological_process owl:Class GO:1903675 biolink:NamedThing negative regulation of cap-dependent translational initiation Any process that stops, prevents or reduces the frequency, rate or extent of cap-dependent translational initiation. tmpzr1t_l9r_go_relaxed.owl down regulation of cap-dependent translational initiation|down-regulation of cap-dependent translational initiation|downregulation of cap-dependent translational initiation|inhibition of cap-dependent translational initiation bf 2014-11-27T19:50:31Z biological_process owl:Class GO:0009144 biolink:NamedThing purine nucleoside triphosphate metabolic process The chemical reactions and pathways involving purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside triphosphate metabolism biological_process owl:Class GO:0106028 biolink:NamedThing neuron projection retraction The organization process which results in the disassembly (either partial or complete) of constituent parts of a neuron projection. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite. tmpzr1t_l9r_go_relaxed.owl neuron projection disassembly hjd 2017-06-23T18:32:42Z biological_process owl:Class GO:0106027 biolink:NamedThing neuron projection organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a neuron, e.g. an axon, or a dendrite. tmpzr1t_l9r_go_relaxed.owl hjd 2017-06-23T18:30:18Z biological_process owl:Class GO:0032450 biolink:NamedThing maltose alpha-glucosidase activity Catalysis of the reaction: alpha-maltose + H2O = 2 alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl maltase activity MetaCyc:RXN-2141|EC:3.2.1.20 molecular_function owl:Class GO:0004558 biolink:NamedThing alpha-1,4-glucosidase activity Catalysis of the hydrolysis of terminal, non-reducing alpha-(1->4)-linked alpha-D-glucose residues with release of alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl lysosomal alpha-glucosidase activity|glucosidosucrase activity|alpha-glucopyranosidase activity|alpha-D-glucosidase activity|glucoinvertase activity|alpha-glucosidase II|glucosidoinvertase activity|maltase-glucoamylase activity|alpha-glucoside hydrolase activity|acid maltase activity|alpha-D-glucoside glucohydrolase activity Reactome:R-HSA-189053|Reactome:R-HSA-5659899|Reactome:R-HSA-5659879|Reactome:R-HSA-191101|EC:3.2.1.20|MetaCyc:MALTODEXGLUCOSID-RXN|Reactome:R-HSA-5659861|Reactome:R-HSA-191116|Reactome:R-HSA-189102|Reactome:R-HSA-5659922|Reactome:R-HSA-191108 GO:0016982|GO:0004562 molecular_function owl:Class GO:0047707 biolink:NamedThing biotin-CoA ligase activity Catalysis of the reaction: ATP + biotin + CoA = AMP + diphosphate + biotinyl-CoA. tmpzr1t_l9r_go_relaxed.owl biotinyl-CoA synthetase activity|biotin:CoA ligase (AMP-forming)|biotin CoA synthetase activity|biotinyl coenzyme A synthetase activity MetaCyc:BIOTIN--COA-LIGASE-RXN|EC:6.2.1.11|RHEA:19681 molecular_function owl:Class GO:0043878 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + NAD+ + H2O = 3-phospho-D-glycerate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD+-dependent glyceraldehyde-3-phosphate dehydrogenase activity|glyceraldehyde-3-phosphate dehydrogenase (NAD) activity|non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)|glyceraldehyde-3-phosphate dehydrogenase (NAD) (non-phosphorylating) activity RHEA:25294|EC:1.2.1.3|MetaCyc:RXN-3443 molecular_function owl:Class GO:0070164 biolink:NamedThing negative regulation of adiponectin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of adiponectin from a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of adiponectin secretion|down-regulation of adiponectin secretion|down regulation of adiponectin secretion|downregulation of adiponectin secretion biological_process owl:Class GO:0051046 biolink:NamedThing regulation of secretion Any process that modulates the frequency, rate or extent of the controlled release of a substance from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900842 biolink:NamedThing positive regulation of helvolic acid biosynthetic process Any process that activates or increases the frequency, rate or extent of helvolic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of helvolic acid biosynthetic process|up-regulation of helvolic acid biosynthetic process|up regulation of helvolic acid biosynthetic process di 2012-06-07T09:39:05Z biological_process owl:Class GO:0033289 biolink:NamedThing intraconoid microtubule A microtubule located such that it threads through the conoid and projects through the polar ring. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048046 biolink:NamedThing apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Apoplast cellular_component owl:Class GO:1904703 biolink:NamedThing negative regulation of protein localization to adherens junction Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation in cell-cell adherens junction|down-regulation of protein localisation in cell-cell adherens junction|down regulation of protein localization to cell-cell adherens junction|downregulation of protein localisation in cell-cell adherens junction|inhibition of protein localisation to cell-cell adherens junction|downregulation of protein localization in cell-cell adherens junction|downregulation of protein localisation to cell-cell adherens junction|down regulation of protein localisation in cell-cell adherens junction|inhibition of protein localization to cell-cell adherens junction|negative regulation of protein localisation to cell-cell adherens junction|inhibition of protein localisation in cell-cell adherens junction|negative regulation of protein localization in cell-cell adherens junction|downregulation of protein localization to cell-cell adherens junction|down-regulation of protein localization in cell-cell adherens junction|down-regulation of protein localization to cell-cell adherens junction|down-regulation of protein localisation to cell-cell adherens junction|inhibition of protein localization in cell-cell adherens junction|down regulation of protein localization in cell-cell adherens junction|down regulation of protein localisation to cell-cell adherens junction kmv 2015-10-01T15:11:56Z biological_process owl:Class GO:0150119 biolink:NamedThing negative regulation of protein localization to cell-cell junction Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell-cell junction. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation to cell-cell junction bc 2019-11-21T13:53:34Z biological_process owl:Class GO:1901828 biolink:NamedThing zeaxanthin bis(beta-D-glucoside) metabolic process The chemical reactions and pathways involving zeaxanthin bis(beta-D-glucoside). tmpzr1t_l9r_go_relaxed.owl zeaxanthin diglucoside metabolism|zeaxanthin bis(beta-D-glucoside) metabolism yaf 2013-01-22T12:31:56Z biological_process owl:Class GO:0050052 biolink:NamedThing leukotriene-E4 20-monooxygenase activity Catalysis of the reaction: H(+) + leukotriene E(4) + NADPH + O(2) = 20-hydroxy-leukotriene E(4) + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl leukotriene-E4 w-hydroxylase activity|leukotriene-E(4) omega-hydroxylase activity|leukotriene-E4 omega-hydroxylase activity|(7E,9E,11Z,14Z)-(5S,6R)-6-(cystein-S-yl)-5-hydroxyicosa-7,9,11,14-tetraenoate,NADPH:oxygen oxidoreductase (20-hydroxylating) RHEA:24120|KEGG_REACTION:R04256|MetaCyc:LEUKOTRIENE-E4-20-MONOOXYGENASE-RXN|EC:1.14.13.34 molecular_function owl:Class GO:0033330 biolink:NamedThing kaempferol O-glucoside biosynthetic process The chemical reactions and pathways leading to the formation of O-glucosylated derivatives of kaempferol. tmpzr1t_l9r_go_relaxed.owl kaempferol O-glucoside biosynthesis|kaempferol O-glucoside synthesit|kaempferol O-glucoside anabolism|kaempferol O-glucoside formation MetaCyc:PWY-5320 biological_process owl:Class GO:0070346 biolink:NamedThing positive regulation of fat cell proliferation Any process that activates or increases the rate or extent of fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of fat cell proliferation|stimulation of fat cell proliferation|positive regulation of adipocyte proliferation|activation of fat cell proliferation|upregulation of fat cell proliferation|up-regulation of fat cell proliferation|positive regulation of adipose cell proliferation biological_process owl:Class GO:1905960 biolink:NamedThing response to differentiation-inducing factor 2 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one stimulus. tmpzr1t_l9r_go_relaxed.owl response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one|response to DIF2|response to DIF-2 tb 2017-02-22T18:45:40Z biological_process owl:Class GO:0002295 biolink:NamedThing T-helper cell lineage commitment The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper cell, a CD4-positive, alpha-beta T cell specialized to promote various immunological processes. tmpzr1t_l9r_go_relaxed.owl Thp lineage commitment|Th0 lineage commitment|T-helper cell fate commitment biological_process owl:Class GO:0002456 biolink:NamedThing T cell mediated immunity Any process involved in the carrying out of an immune response by a T cell. tmpzr1t_l9r_go_relaxed.owl T lymphocyte mediated immunity|cellular immune response|T-lymphocyte mediated immunity|T-cell mediated immunity|cell-mediated immunity biological_process owl:Class GO:0042214 biolink:NamedThing terpene metabolic process The chemical reactions and pathways involving terpenes, any of a large group of hydrocarbons that are made up of isoprene (C5H8) units which may be cyclic, acyclic or multicyclic, saturated or unsaturated, and may contain various functional groups. tmpzr1t_l9r_go_relaxed.owl terpene metabolism biological_process owl:Class GO:1990001 biolink:NamedThing inhibition of cysteine-type endopeptidase activity involved in apoptotic process Any process that prevents the activation of an inactive cysteine-type endopeptidase involved in an apoptotic process. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-05T15:42:50Z biological_process owl:Class GO:0043154 biolink:NamedThing negative regulation of cysteine-type endopeptidase activity involved in apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of caspase activity|negative regulation of caspase activation|inhibition of caspase activation|inhibition of caspase activity|down-regulation of caspase activity|downregulation of caspase activity|negative regulation of caspase activity GO:0001719 biological_process owl:Class GO:0008405 biolink:NamedThing arachidonic acid 11,12-epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-11,12-epoxyeicosatrienoic acid. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2C38 RHEA:51480 molecular_function owl:Class GO:0003405 biolink:NamedThing optic vesicle elongation The developmental growth that results in the lengthening of the optic vesicle in the posterior direction. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T01:59:50Z biological_process owl:Class GO:0030207 biolink:NamedThing chondroitin sulfate catabolic process The chemical reactions and pathways resulting in the breakdown of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate catabolic process|chondroitin sulfate catabolism|chondroitin sulfate degradation|chondroitin sulfate breakdown|chondroitin sulphate catabolism biological_process owl:Class GO:0015090 biolink:NamedThing low-affinity ferric iron ion transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Fe2+(out) = Fe2+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity iron ion transmembrane transporter activity|low affinity iron transporter activity molecular_function owl:Class GO:0015091 biolink:NamedThing ferric iron transmembrane transporter activity Enables the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Ferric iron is rarely transported in the free form. Some bacteria have a system in which an outer membrane protein takes iron away from host ferritin or lactoferrin and transport it to a Fe3+ binding protein in the periplasm. The periplasmic protein then delivers the Fe3+ to a transport system located in the cytoplasmic membrane. Consider also GO:0015343 siderophore transmembrane transporter activity. molecular_function owl:Class GO:0018418 biolink:NamedThing nickel incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide The incorporation of nickel into a 3Fe-2S complex by tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide. tmpzr1t_l9r_go_relaxed.owl nickel incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido L-glutamato L-histidino L-serinyl nickel triiron disulphide trioxide RESID:AA0 biological_process owl:Class GO:0019359 biolink:NamedThing nicotinamide nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide nucleotide formation|nicotinamide nucleotide synthesis|nicotinamide nucleotide biosynthesis|nicotinamide nucleotide anabolism biological_process owl:Class GO:0019363 biolink:NamedThing pyridine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. tmpzr1t_l9r_go_relaxed.owl pyridine nucleotide synthesis|pyridine nucleotide formation|pyridine nucleotide biosynthesis|pyridine nucleotide anabolism MetaCyc:PYRIDNUCSYN-PWY biological_process owl:Class GO:0031907 biolink:NamedThing microbody lumen The volume enclosed by the membranes of a microbody. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0055109 biolink:NamedThing invagination involved in gastrulation with mouth forming second The infolding of the epithelial sheet into the embryo involved in deuterostomic gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030061 biolink:NamedThing mitochondrial crista Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria. tmpzr1t_l9r_go_relaxed.owl cristae|mitochondrial cristae NIF_Subcellular:sao333328131 See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'. cellular_component owl:Class GO:0070920 biolink:NamedThing regulation of production of small RNA involved in gene silencing by RNA Any process that modulates the frequency, rate or extent of the production of small RNA involved in gene silencing by RNA. tmpzr1t_l9r_go_relaxed.owl regulation of gene silencing by RNA, production of guide RNA|regulation of gene silencing by RNA, production of small RNA mah 2009-09-11T03:41:59Z biological_process owl:Class GO:0071296 biolink:NamedThing cellular response to biotin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to vitamin B7|cellular response to Bios IIB|cellular response to vitamin H|cellular response to coenzyme R mah 2009-12-10T04:28:22Z biological_process owl:Class GO:1904957 biolink:NamedThing negative regulation of midbrain dopaminergic neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of mDA neuron differentiation|inhibition of midbrain dopaminergic neuron production|down-regulation of midbrain dopaminergic neuron production|down regulation of midbrain dopaminergic neuron differentiation|down-regulation of midbrain DA neurogenesis|down-regulation of midbrain dopaminergic neuron differentiation|downregulation of midbrain dopaminergic neuron differentiation|negative regulation of midbrain dopaminergic neuron production|downregulation of DA neurogenesis from midbrain floor plate|down regulation of DA neurogenesis from midbrain floor plate|down regulation of mDA neuron differentiation|downregulation of midbrain dopaminergic neuron production|inhibition of mDA neuron differentiation|inhibition of midbrain dopaminergic neuron differentiation|negative regulation of midbrain DA neurogenesis|down-regulation of DA neurogenesis from midbrain floor plate|downregulation of mDA neuron differentiation|negative regulation of mDA neuron differentiation|down regulation of midbrain dopaminergic neuron production|downregulation of midbrain DA neurogenesis|inhibition of midbrain DA neurogenesis|inhibition of DA neurogenesis from midbrain floor plate|negative regulation of DA neurogenesis from midbrain floor plate|down regulation of midbrain DA neurogenesis bf 2016-02-09T12:00:29Z biological_process owl:Class GO:1904339 biolink:NamedThing negative regulation of dopaminergic neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of dopaminergic neuron differentiation|down regulation of dopaminergic neuron differentiation|inhibition of dopaminergic neuron differentiation|down-regulation of dopaminergic neuron differentiation sl 2015-06-11T18:06:25Z biological_process owl:Class GO:0033067 biolink:NamedThing macrolide metabolic process The chemical reactions and pathways involving macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl macrolide metabolism biological_process owl:Class GO:0035510 biolink:NamedThing DNA dealkylation The removal of an alkyl group from one or more nucleotides within an DNA molecule. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T02:20:08Z biological_process owl:Class GO:0061391 biolink:NamedThing negative regulation of direction of cell growth Any process that decreases the direction of cell growth. tmpzr1t_l9r_go_relaxed.owl dph 2011-07-14T10:25:55Z biological_process owl:Class GO:0043861 biolink:NamedThing agmatine:putrescine antiporter activity Catalysis of the reaction: agmatine(out) + putrescine(in) = agmatine(in) + putrescine(out). tmpzr1t_l9r_go_relaxed.owl agmatine-putrescine antiporter activity|agmatine/putrescine antiporter activity molecular_function owl:Class GO:0047510 biolink:NamedThing (S)-2-methylmalate dehydratase activity Catalysis of the reaction: S-citramalate = H(2)O + mesaconate. tmpzr1t_l9r_go_relaxed.owl (+)-citramalic hydro-lyase activity|mesaconase activity|(+)-citramalate hydro-lyase activity|(S)-2-methylmalate hydro-lyase activity|L-citramalate hydrolase activity|citramalate dehydratase activity|mesaconate hydratase activity|(S)-2-methylmalate hydro-lyase (2-methylfumarate-forming)|mesaconate mesaconase activity EC:4.2.1.34|KEGG_REACTION:R03693|MetaCyc:S-2-METHYLMALATE-DEHYDRATASE-RXN|RHEA:13529 molecular_function owl:Class GO:0048504 biolink:NamedThing regulation of timing of animal organ formation Any process that modulates the rate, frequency or extent of animal organ formation at a consistent predetermined time point during development. tmpzr1t_l9r_go_relaxed.owl timing of organ biosynthesis|timing of organ formation biological_process owl:Class GO:2001057 biolink:NamedThing reactive nitrogen species metabolic process The chemical reactions and pathways involving a reactive nitrogen species. tmpzr1t_l9r_go_relaxed.owl RNS metabolism|RNS metabolic process|reactive nitrogen species metabolism jl 2011-09-09T01:29:13Z biological_process owl:Class GO:0061344 biolink:NamedThing regulation of cell adhesion involved in heart morphogenesis Any process that modulates the extent of cell adhesion contributing to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T11:35:27Z biological_process owl:Class GO:1901866 biolink:NamedThing capsorubin biosynthetic process The chemical reactions and pathways resulting in the formation of capsorubin. tmpzr1t_l9r_go_relaxed.owl capsorubin formation|capsorubin synthesis|capsorubin biosynthesis|capsorubin anabolism yaf 2013-02-04T10:50:26Z biological_process owl:Class GO:0010221 biolink:NamedThing negative regulation of vernalization response Any process that stops, prevents or reduces the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures. tmpzr1t_l9r_go_relaxed.owl downregulation of vernalization response|down-regulation of vernalization response|inhibition of vernalization response|down regulation of vernalization response biological_process owl:Class GO:1990025 biolink:NamedThing F bouton Synaptic bouton found in the ventral horn of the spinal cord. F boutons range in diameter from 0.5 to 7 um and contain flattened or pleomorphic synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_100206 pr 2013-02-06T10:29:42Z cellular_component owl:Class GO:0002609 biolink:NamedThing positive regulation of myeloid dendritic cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of myeloid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl activation of myeloid dendritic cell antigen processing and presentation|upregulation of myeloid dendritic cell antigen processing and presentation|up-regulation of myeloid dendritic cell antigen processing and presentation|stimulation of myeloid dendritic cell antigen processing and presentation|up regulation of myeloid dendritic cell antigen processing and presentation biological_process owl:Class GO:0099099 biolink:NamedThing G-protein gated ion channel activity An ion channel activity that is gated by binding of a G-protein beta-gamma dimer. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102911 biolink:NamedThing (-)-secoisolariciresinol dehydrogenase activity Catalysis of the reaction: (-)-secoisolariciresinol + NAD <=> H+ + (-)-lactol + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8680 molecular_function owl:Class GO:0044812 biolink:NamedThing fermentative hydrogen production The fermentation of organic substances with a net release of hydrogen. tmpzr1t_l9r_go_relaxed.owl carbohydrate fermentation Wikipedia:Fermentative_hydrogen_production jl 2013-09-18T14:09:47Z biological_process owl:Class GO:2000648 biolink:NamedThing positive regulation of stem cell proliferation Any process that activates or increases the frequency, rate or extent of stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2011-04-27T01:04:25Z biological_process owl:Class GO:0072091 biolink:NamedThing regulation of stem cell proliferation Any process that modulates the frequency, rate or extent of stem cell proliferation. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T02:09:03Z biological_process owl:Class GO:0008426 biolink:NamedThing protein kinase C inhibitor activity Binds to and stops, prevents or reduces the activity of protein kinase C, an enzyme which phosphorylates a protein. tmpzr1t_l9r_go_relaxed.owl PKC inhibitor activity|diacylglycerol-activated phospholipid-dependent protein kinase C inhibitor activity|diacylglycerol-activated phospholipid-dependent PKC inhibitor activity GO:0004863 molecular_function owl:Class GO:0071772 biolink:NamedThing response to BMP Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bone morphogenetic protein (BMP) stimulus. tmpzr1t_l9r_go_relaxed.owl response to BMP stimulus|response to bone morphogenetic protein stimulus mah 2010-08-31T11:02:11Z biological_process owl:Class GO:0014731 biolink:NamedThing spectrin-associated cytoskeleton The part of the cytoskeleton composed of spectrin, protein 4.1 and ankyrin. Spectrin-associated cytoskeleton is associated with the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061784 biolink:NamedThing peptidoglycan N-acetylglucosaminidase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) from peptidoglycan. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-07T16:17:03Z molecular_function owl:Class GO:0015929 biolink:NamedThing hexosaminidase activity Catalysis of the cleavage of hexosamine or N-acetylhexosamine residues (e.g. N-acetylglucosamine) residues from gangliosides or other glycoside oligosaccharides. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.2.1.52-RXN molecular_function owl:Class GO:0032690 biolink:NamedThing negative regulation of interleukin-1 alpha production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 alpha production. tmpzr1t_l9r_go_relaxed.owl downregulation of interleukin-1 alpha production|negative regulation of IL-1 alpha production|down-regulation of interleukin-1 alpha production|inhibition of interleukin-1 alpha production|down regulation of interleukin-1 alpha production|negative regulation of interleukin-1 alpha secretion|negative regulation of interleukin-1 alpha biosynthetic process GO:0050723|GO:0050712 biological_process owl:Class GO:0032650 biolink:NamedThing regulation of interleukin-1 alpha production Any process that modulates the frequency, rate, or extent of interleukin-1 alpha production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-1 alpha biosynthetic process|regulation of IL-1 alpha production|regulation of interleukin-1 alpha secretion GO:0050721|GO:0050705 biological_process owl:Class GO:1905655 biolink:NamedThing negative regulation of artery smooth muscle contraction Any process that stops, prevents or reduces the frequency, rate or extent of artery smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl inhibition of artery smooth muscle contraction|downregulation of artery smooth muscle contraction|down-regulation of artery smooth muscle contraction|down regulation of artery smooth muscle contraction rph 2016-11-09T12:34:53Z biological_process owl:Class GO:0042612 biolink:NamedThing MHC class I protein complex A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'MHC class I peptide loading complex ; GO:0042824'. cellular_component owl:Class GO:0042611 biolink:NamedThing MHC protein complex A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047674 biolink:NamedThing apiose 1-reductase activity Catalysis of the reaction: D-apiitol + NAD(+) = D-apiose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-apiose reductase activity|D-apiitol reductase activity|D-apiitol:NAD+ 1-oxidoreductase activity RHEA:15301|EC:1.1.1.114|KEGG_REACTION:R03577|MetaCyc:APIOSE-1-REDUCTASE-RXN molecular_function owl:Class GO:0070914 biolink:NamedThing UV-damage excision repair A DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site. UV-damage excision repair acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs). tmpzr1t_l9r_go_relaxed.owl AER|alternative excision repair|UVER|UVDE-dependent excision repair|UV-damaged DNA endonuclease-dependent excision repair mah 2009-09-10T03:14:06Z biological_process owl:Class GO:0032080 biolink:NamedThing negative regulation of type I site-specific deoxyribonuclease activity Any process that stops or reduces the rate of type I restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of type I restriction endodeoxyribonuclease activity|type I restriction enzyme inhibitor|type I restriction endodeoxyribonuclease inhibitor|down regulation of type I restriction endodeoxyribonuclease activity|inhibition of type I restriction endodeoxyribonuclease activity|downregulation of type I restriction endodeoxyribonuclease activity|down-regulation of type I restriction endodeoxyribonuclease activity biological_process owl:Class GO:0062210 biolink:NamedThing shoot regeneration The regeneration process by which a damaged or lost shoot regrows or re-differentiates. This process may occur via de-differentiation and subsequent reprogramming of somatic cells or activation of existing undifferentiated (meristematic) cells to produce a new shoot meristem and subsequently a new shoot. tmpzr1t_l9r_go_relaxed.owl shoot system regeneration dph 2020-02-21T12:38:43Z biological_process owl:Class GO:0046068 biolink:NamedThing cGMP metabolic process The chemical reactions and pathways involving cyclic GMP, guanosine 3',5'-phosphate. tmpzr1t_l9r_go_relaxed.owl cGMP metabolism biological_process owl:Class GO:0050286 biolink:NamedThing sorbitol-6-phosphatase activity Catalysis of the reaction: D-glucitol 6-phosphate + H(2)O = D-glucitol + phosphate. tmpzr1t_l9r_go_relaxed.owl sorbitol-6-phosphate phosphohydrolase activity|sorbitol-6-phosphate phosphatase activity EC:3.1.3.50|RHEA:24580|KEGG_REACTION:R02866|MetaCyc:SORBITOL-6-PHOSPHATASE-RXN molecular_function owl:Class GO:1905095 biolink:NamedThing negative regulation of apolipoprotein A-I-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of apolipoprotein A-I-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl inhibition of apolipoprotein A-I-mediated signaling pathway|negative regulation of apolipoprotein A-I-mediated signalling pathway|down regulation of apolipoprotein A-I-mediated signaling pathway|inhibition of apolipoprotein A-I-mediated signalling pathway|down-regulation of apolipoprotein A-I-mediated signalling pathway|downregulation of apolipoprotein A-I-mediated signaling pathway|downregulation of apolipoprotein A-I-mediated signalling pathway|down regulation of apolipoprotein A-I-mediated signalling pathway|down-regulation of apolipoprotein A-I-mediated signaling pathway bc 2016-03-31T11:33:58Z biological_process owl:Class GO:0042430 biolink:NamedThing indole-containing compound metabolic process The chemical reactions and pathways involving compounds that contain an indole (2,3-benzopyrrole) skeleton. tmpzr1t_l9r_go_relaxed.owl ketole metabolism|indole and derivative metabolism|ketole metabolic process|indole-containing compound metabolism|indole derivative metabolic process|indole derivative metabolism|indole and derivative metabolic process GO:0042434 biological_process owl:Class GO:1901790 biolink:NamedThing 3-(2,3-dihydroxyphenyl)propanoate metabolic process The chemical reactions and pathways involving 3-(2,3-dihydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(2,3-dihydroxyphenyl)propanoate metabolism yaf 2013-01-16T11:40:57Z biological_process owl:Class GO:0060651 biolink:NamedThing regulation of epithelial cell proliferation involved in mammary gland bud elongation Any process that modulates the frequency, rate or extent of mammary gland bud epithelial cell proliferation that results in the elongation of the bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:57:18Z biological_process owl:Class GO:2000560 biolink:NamedThing positive regulation of CD24 production Any process that activates or increases the frequency, rate or extent of CD24 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD24 synthesis|positive regulation of CD24 anabolism|positive regulation of CD24 formation|positive regulation of CD24 biosynthetic process|positive regulation of CD24 biosynthesis ebc 2011-04-03T08:57:02Z biological_process owl:Class GO:0008696 biolink:NamedThing 4-amino-4-deoxychorismate lyase activity Catalysis of the reaction: 4-amino-4-deoxychorismate = 4-aminobenzoate + H(+) + pyruvate. tmpzr1t_l9r_go_relaxed.owl 4-amino-4-deoxychorismate pyruvate-lyase (4-aminobenzoate-forming)|enzyme X activity|ADC lyase activity|aminodeoxychorismate lyase activity|para-aminobenzoic acid synthase|para-aminobenzoic acid (PABA) synthase|p-aminobenzoate synthetase|4-amino-4-deoxychorismate pyruvate-lyase activity MetaCyc:ADCLY-RXN|KEGG_REACTION:R05553|RHEA:16201|EC:4.1.3.38 Note that the name 'para-amino benzoic acid synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional 4-amino-4-deoxychorismate lyase activity was discovered. It is the lyase activity that actually produces para-aminobenzoic acid from 4-amino-4-deoxychorismate. molecular_function owl:Class GO:0140231 biolink:NamedThing anterograde axonal transport of neurotransmitter receptor complex The directed movement of a neurotransmitter receptor complex along microtubules from the cell body toward the cell periphery in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl pg 2018-07-09T09:41:37Z biological_process owl:Class GO:0009385 biolink:NamedThing N-acylmannosamine-6-phosphate 2-epimerase activity Catalysis of the reaction: N-acetyl-D-mannosamine-6-phosphate = N-acetyl-D-glucosamine-6-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acylmannosamine-6-P epimerase activity MetaCyc:NANE-RXN|RHEA:25257|EC:5.1.3.9 molecular_function owl:Class GO:1901111 biolink:NamedThing actinorhodin catabolic process The chemical reactions and pathways resulting in the breakdown of actinorhodin. tmpzr1t_l9r_go_relaxed.owl actinorhodin breakdown|actinorhodin catabolism|actinorhodin degradation yaf 2012-07-11T03:06:00Z biological_process owl:Class GO:0045274 biolink:NamedThing plasma membrane respiratory chain complex II A part of the respiratory chain located in the plasma membrane, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. Examples of this component are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl respiratory chain complex II cellular_component owl:Class GO:0010621 biolink:NamedThing negative regulation of transcription by transcription factor localization Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves the localization of a transcription factor. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription by transcription factor localisation biological_process owl:Class GO:0106399 biolink:NamedThing acyl-coenzyme A diphosphatase activity Catalysis of the reaction: an acyl-CoA + H2O = adenosine 3',5'-bisphosphate + an acyl-4'-phosphopantetheine + 2 H(+). tmpzr1t_l9r_go_relaxed.owl RHEA:50044 hjd 2021-10-11T14:13:26Z molecular_function owl:Class GO:0042875 biolink:NamedThing D-galactonate transmembrane transport The process in which D-galactonate, the D-enantiomer of galactonate, is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl D-galactonate transport biological_process owl:Class GO:0042873 biolink:NamedThing aldonate transmembrane transport The process in which aldonate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl aldonate transport biological_process owl:Class GO:2000564 biolink:NamedThing regulation of CD8-positive, alpha-beta T cell proliferation Any process that modulates the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:03:13Z biological_process owl:Class GO:2000592 biolink:NamedThing regulation of metanephric DCT cell differentiation Any process that modulates the frequency, rate or extent of metanephric DCT cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of metanephric distal convoluted tubule cell differentiation yaf 2011-04-11T01:40:33Z biological_process owl:Class GO:0140242 biolink:NamedThing translation at postsynapse Translation that occurs at the postsynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T09:26:27Z biological_process owl:Class GO:0060129 biolink:NamedThing thyroid-stimulating hormone-secreting cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a thyroid-stimulating hormone-secreting cell. A thyroid-stimulating hormone-secreting cell is a basophil cell of the anterior pituitary that produces thyroid-stimulating hormone, thyrotrophin. tmpzr1t_l9r_go_relaxed.owl TSH-secreting cell differentiation|thyrotroph differentiation|thyroid stimulating hormone secreting cell differentiation|beta-basophil differentiation|thyrotrope differentiation biological_process owl:Class GO:1902962 biolink:NamedThing regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process Any process that modulates the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|regulation of metalloendoprotease activity involved in APP catabolic process|regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|regulation of metalloendoproteinase activity involved in APP catabolism|regulation of metalloendoproteinase activity involved in APP catabolic process|regulation of metalloendopeptidase activity involved in APP catabolic process|regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|regulation of metalloendoprotease activity involved in APP catabolism|regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|regulation of metalloendopeptidase activity involved in APP catabolism|regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism sjp 2014-05-06T09:11:55Z biological_process owl:Class GO:1901553 biolink:NamedThing malonic acid transmembrane transport The directed movement of malonic acid across a membrane. tmpzr1t_l9r_go_relaxed.owl malonic acid membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. pr 2012-10-30T15:23:54Z biological_process owl:Class GO:2000826 biolink:NamedThing regulation of heart morphogenesis Any process that modulates the frequency, rate or extent of heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac morphogenesis vk 2011-07-19T10:08:58Z biological_process owl:Class GO:1904351 biolink:NamedThing negative regulation of protein catabolic process in the vacuole Any process that stops, prevents or reduces the frequency, rate or extent of protein catabolic process in the vacuole. tmpzr1t_l9r_go_relaxed.owl downregulation of protein catabolic process in the vacuole|down regulation of vacuolar protein degradation|inhibition of protein catabolic process in the vacuole|negative regulation of vacuolar protein catabolic process|inhibition of vacuolar protein breakdown|negative regulation of vacuolar protein breakdown|down-regulation of vacuolar protein breakdown|down regulation of protein catabolic process in the vacuole|down-regulation of protein catabolic process in the vacuole|down-regulation of vacuolar protein degradation|downregulation of vacuolar protein degradation|down regulation of vacuolar protein catabolism|inhibition of vacuolar protein catabolic process|down-regulation of vacuolar protein catabolic process|down regulation of vacuolar protein catabolic process|negative regulation of vacuolar protein degradation|inhibition of vacuolar protein degradation|down-regulation of vacuolar protein catabolism|down regulation of vacuolar protein breakdown|negative regulation of vacuolar protein catabolism|downregulation of vacuolar protein catabolic process|downregulation of vacuolar protein breakdown|inhibition of vacuolar protein catabolism|downregulation of vacuolar protein catabolism rl 2015-06-12T09:10:42Z biological_process owl:Class GO:0061053 biolink:NamedThing somite development The progression of a somite from its initial formation to the mature structure. Somites are mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-02T12:05:13Z biological_process owl:Class GO:0072389 biolink:NamedThing flavin adenine dinucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl flavin adenine dinucleotide breakdown|flavin adenine dinucleotide catabolism|FAD or FADH2 catabolic process|flavin adenine dinucleotide degradation mah 2010-12-02T04:28:02Z biological_process owl:Class GO:0042728 biolink:NamedThing flavin-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. tmpzr1t_l9r_go_relaxed.owl vitamin B2 and derivative catabolism|vitamin B2 and derivative catabolic process|flavin-containing compound catabolism|riboflavin and derivative catabolism|flavin-containing compound catabolic process breakdown|riboflavin and derivative catabolic process|flavin-containing compound catabolic process degradation biological_process owl:Class GO:0061324 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation The canonical Wnt signaling pathway that contributes to the modulation of the expansion of a population of cardiac outflow tract cells. tmpzr1t_l9r_go_relaxed.owl canonical Wnt-activated signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation|canonical Wnt receptor signalling pathway involved in positive regulation of cardiac outflow tract cell proliferation|canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation dph 2010-09-28T09:19:37Z biological_process owl:Class GO:0010973 biolink:NamedThing positive regulation of division septum assembly Any process that increases the frequency, rate or extent of division septum formation. division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of division septum formation|positive regulation of division septum formation involved in cell cycle cytokinesis|upregulation of mitotic division septum assembly tb 2009-06-01T10:27:15Z GO:1902470|GO:1901912 biological_process owl:Class GO:0075218 biolink:NamedThing zoospore encystment on host The physiological, developmental and morphological changes that occur in a symbiont zoospore during the process of its encystment. Encystment means to enter a state of essentially suspended animation in which the spore is protected by an outer coating and remains immobile and inactive until favorable conditions for growth occur again. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010311 biolink:NamedThing lateral root formation The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper. tmpzr1t_l9r_go_relaxed.owl lateral root primordium development GO:0010386 biological_process owl:Class GO:0043834 biolink:NamedThing trimethylamine methyltransferase activity Catalysis of the reaction: trimethylamine + a trimethylamine corrinoid protein = a methylated trimethylamine corrinoid protein + dimethylamine. tmpzr1t_l9r_go_relaxed.owl MT1|trimethylamine-specific methylcobalamin:coenzyme M methyltransferase activity|TMA methyltransferase 1|trimethylamine:corrinoid methyltransferase activity|mttB1 MetaCyc:RXN-8102|RHEA:39287|EC:2.1.1.250 This function is the first step in the pathway of methanogenesis from trimethylamine. molecular_function owl:Class GO:0050739 biolink:NamedThing peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium The cross-linking of a tyrosine residue to a tryptophan residue and a methionine residue to form S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium. tmpzr1t_l9r_go_relaxed.owl RESID:AA0348 biological_process owl:Class GO:0071901 biolink:NamedThing negative regulation of protein serine/threonine kinase activity Any process that decreases the rate, frequency, or extent of protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-15T03:09:43Z biological_process owl:Class GO:0004161 biolink:NamedThing dimethylallyltranstransferase activity Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl diphosphate synthase|(2E,6E)-farnesyl diphosphate synthetase activity|dimethylallyltransferase activity|trans-farnesyl pyrophosphate synthetase activity|DMAPP:IPP-dimethylallyltransferase activity|diprenyltransferase activity|dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase activity|geranyl pyrophosphate synthetase activity|geranyl-diphosphate synthase activity|geranyl pyrophosphate synthase activity EC:2.5.1.1|MetaCyc:GPPSYN-RXN|RHEA:22408|Reactome:R-HSA-191322 Note that this is the first step in the formation of farnesyl diphosphate. The second step is 'geranyltranstransferase activity ; GO:0004337'. Consider also annotating to the biological process term 'farnesyl diphosphate biosynthetic process ; GO:0045337'. molecular_function owl:Class GO:0007181 biolink:NamedThing transforming growth factor beta receptor complex assembly The aggregation, arrangement and bonding together of a ligand-bound type II transforming growth factor beta (TGF-beta) receptor dimer with a type I TGF-beta receptor dimer, following ligand binding, to form a heterotetrameric TGF-beta receptor complex. tmpzr1t_l9r_go_relaxed.owl TGFbeta receptor complex assembly|TGF-beta:type II receptor:type I receptor complex assembly|TGF-beta receptor complex assembly biological_process owl:Class GO:0016335 biolink:NamedThing morphogenesis of larval imaginal disc epithelium The process in which the anatomical structures of a larval imaginal disc epithelium are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902688 biolink:NamedThing regulation of NAD metabolic process Any process that modulates the frequency, rate or extent of NAD metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of NAD metabolism|regulation of oxidized NAD metabolism|regulation of NAD (oxidized) metabolic process|regulation of oxidized nicotinamide adenine dinucleotide metabolism|regulation of oxidized NAD metabolic process|regulation of NAD (oxidized) metabolism|regulation of nicotinamide adenine dinucleotide metabolic process|regulation of NAD phosphorylation and dephosphorylation|regulation of nicotinamide adenine dinucleotide metabolism|regulation of oxidized nicotinamide adenine dinucleotide metabolic process di 2014-02-12T18:58:50Z biological_process owl:Class GO:0036384 biolink:NamedThing cytidine-diphosphatase activity Catalysis of the reaction: CDP + H2O = CMP + phosphate. tmpzr1t_l9r_go_relaxed.owl CDPase activity RHEA:64880 bf 2013-05-23T13:33:01Z molecular_function owl:Class GO:0035375 biolink:NamedThing zymogen binding Binding to a zymogen, an enzymatically inactive precursor of an enzyme that is often convertible to an active enzyme by proteolysis. tmpzr1t_l9r_go_relaxed.owl proenzyme binding bf 2010-03-18T10:50:35Z molecular_function owl:Class GO:0050013 biolink:NamedThing 2-dehydropantoate aldolase activity Catalysis of the reaction: 2-dehydropantoate = 3-methyl-2-oxobutanoate + formaldehyde. tmpzr1t_l9r_go_relaxed.owl ketopantoaldolase activity|2-dehydropantoate formaldehyde-lyase activity|2-dehydropantoate formaldehyde-lyase (3-methyl-2-oxobutanoate-forming) RHEA:23276|EC:4.1.2.12|MetaCyc:KETOPANTOALDOLASE-RXN molecular_function owl:Class GO:0002761 biolink:NamedThing regulation of myeloid leukocyte differentiation Any process that modulates the frequency, rate, or extent of myeloid leukocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010293 biolink:NamedThing abscisic aldehyde oxidase activity Catalysis of the reaction: (+)-abscisic aldehyde + H(2)O + O(2) = abscisate + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl abscisic-aldehyde:oxygen oxidoreductase activity|AAO3|abscisic-aldehyde oxidase activity|AOdelta RHEA:20529|MetaCyc:1.2.3.14-RXN|EC:1.2.3.14|KEGG_REACTION:R06957 GO:0033725 molecular_function owl:Class GO:0018488 biolink:NamedThing aryl-aldehyde oxidase activity Catalysis of the reaction: an aromatic aldehyde + O2 + H2O = an aromatic acid + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl aryl-aldehyde:oxygen oxidoreductase activity UM-BBD_reactionID:r0145|RHEA:18569|EC:1.2.3.9|MetaCyc:ARYL-ALDEHYDE-OXIDASE-RXN molecular_function owl:Class GO:1990729 biolink:NamedThing primary miRNA modification The covalent alteration of one or more nucleotides within a primary miRNA molecule to produce a primary miRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl sp 2015-04-16T06:19:22Z biological_process owl:Class GO:0014828 biolink:NamedThing distal stomach smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the distal stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The distal stomach is composed of the lower body and antrum and develops strong peristaltic phasic contractions that increase in amplitude as they propagate toward the pylorus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014821 biolink:NamedThing phasic smooth muscle contraction A process in which force is generated within phasic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the phasic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Phasic smooth muscle contraction occurs in a series of discrete contractions and relaxations. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033141 biolink:NamedThing positive regulation of peptidyl-serine phosphorylation of STAT protein Any process that activates or increases the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl up-regulation of serine phosphorylation of STAT3 protein|upregulation of serine phosphorylation of STAT3 protein|activation of serine phosphorylation of STAT3 protein|up regulation of serine phosphorylation of STAT3 protein|positive regulation of serine phosphorylation of STAT3 protein GO:1903263 biological_process owl:Class GO:0033139 biolink:NamedThing regulation of peptidyl-serine phosphorylation of STAT protein Any process that modulates the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl regulation of serine phosphorylation of STAT3 protein mr 2014-08-06T21:22:57Z GO:1903261 biological_process owl:Class GO:0071050 biolink:NamedThing sno(s)RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of snoRNA class molecule (referred to as an sRNA in Archaea). In eukaryotes, this occurs in conjunction with termination of transcription of precursor snoRNA molecules and may occur post-transcriptionally on incorrectly processed molecules targeted for degradation. tmpzr1t_l9r_go_relaxed.owl sRNA polyadenylation|snoRNA polyadenylation https://github.com/geneontology/go-ontology/issues/20416 krc 2009-08-25T03:33:44Z biological_process owl:Class GO:0031126 biolink:NamedThing sno(s)RNA 3'-end processing Any process involved in forming the mature 3' end of a snoRNA family molecule, also referred to as an sRNA in Archaea. tmpzr1t_l9r_go_relaxed.owl sno(s)RNA 3' end processing|snoRNA 3'-end processing|sRNA 3'-end processing https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0006005 biolink:NamedThing L-fucose biosynthetic process The chemical reactions and pathways resulting in the formation of L-fucose (6-deoxy-L-galactose). tmpzr1t_l9r_go_relaxed.owl L-fucose synthesis|L-fucose biosynthesis|L-fucose anabolism|L-fucose formation biological_process owl:Class GO:0051086 biolink:NamedThing chaperone mediated protein folding independent of cofactor The process of assisting in the correct noncovalent assembly of posttranslational proteins and does not depend on additional protein cofactors. This function occurs over one or more cycles of nucleotide-dependent binding and release. tmpzr1t_l9r_go_relaxed.owl chaperone cofactor-independent protein folding biological_process owl:Class GO:0051084 biolink:NamedThing 'de novo' posttranslational protein folding The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl 'de novo' post-translational protein folding biological_process owl:Class GO:1900517 biolink:NamedThing positive regulation of xylose catabolic process to ethanol Any process that activates or increases the frequency, rate or extent of xylose catabolic process to ethanol. tmpzr1t_l9r_go_relaxed.owl upregulation of xylose catabolic process to ethanol|upregulation of xylose catabolism to ethanol|positive regulation of xylose catabolism to ethanol|activation of xylose catabolism to ethanol|up-regulation of xylose catabolic process to ethanol|up regulation of xylose catabolic process to ethanol|up regulation of xylose catabolism to ethanol|activation of xylose catabolic process to ethanol|up-regulation of xylose catabolism to ethanol tt 2012-05-02T04:09:26Z biological_process owl:Class GO:0071133 biolink:NamedThing alpha9-beta1 integrin-ADAM8 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM8. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM8 complex mah 2009-11-13T02:28:49Z cellular_component owl:Class GO:0004782 biolink:NamedThing sulfinoalanine decarboxylase activity Catalysis of the reaction: 3-sulfino-L-alanine = hypotaurine + CO2. tmpzr1t_l9r_go_relaxed.owl cysteic decarboxylase activity|cysteinesulfinate decarboxylase activity|cysteine-sulfinate decarboxylase activity|sulphinoalanine decarboxylase activity|CSADCase activity|CADCase/CSADCase activity|L-cysteinesulfinic acid decarboxylase activity|3-sulfino-L-alanine carboxy-lyase (hypotaurine-forming)|3-sulfino-L-alanine carboxy-lyase activity|CSAD|sulfoalanine decarboxylase activity|cysteinesulfinic acid decarboxylase activity MetaCyc:SULFINOALANINE-DECARBOXYLASE-RXN|Reactome:R-HSA-1655443|EC:4.1.1.29|RHEA:16877 molecular_function owl:Class GO:1903766 biolink:NamedThing positive regulation of potassium ion export across plasma membrane Any process that activates or increases the frequency, rate or extent of potassium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of potassium ion export|up-regulation of potassium ion export across plasma membrane|up-regulation of potassium ion export|upregulation of potassium ion export across plasma membrane|positive regulation of potassium ion export|activation of potassium ion export|up regulation of potassium export|up regulation of potassium ion export across plasma membrane|positive regulation of potassium export|activation of potassium export|up-regulation of potassium export|activation of potassium ion export across plasma membrane|up regulation of potassium ion export|upregulation of potassium export rl 2013-07-17T16:40:10Z GO:1902304 biological_process owl:Class GO:0018823 biolink:NamedThing cyclohexa-1,5-dienecarbonyl-CoA hydratase activity Catalysis of the reaction: cyclohexa-1,5-diene-1-carbonyl-CoA + H(2)O = 6-hydroxycyclohex-1-enecarbonyl-CoA. tmpzr1t_l9r_go_relaxed.owl 6-hydroxycyclohex-1-enecarbonyl-CoA (cyclohexa-1,5-dienecarbonyl-CoA-forming)|cyclohexa-1,5-dienecarbonyl-CoA hydro-lyase activity|dienoyl-CoA hydratase activity|cyclohex-1,5-diene-1-carbonyl-CoA hydratase activity|cyclohexa-1,5-diene-1-carbonyl-CoA hydratase activity|cyclohexa-1,5-diene-1-carboxyl-CoA hydratase activity UM-BBD_reactionID:r0203|KEGG_REACTION:R05597|RHEA:21856|MetaCyc:4.2.1.100-RXN|EC:4.2.1.100 molecular_function owl:Class GO:0097510 biolink:NamedThing base-excision repair, AP site formation via deaminated base removal A base-excision repair, AP site formation process occurring via excision of a deaminated base. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-08T14:44:01Z biological_process owl:Class GO:0006285 biolink:NamedThing base-excision repair, AP site formation The formation of an AP site, a deoxyribose sugar with a missing base, by DNA glycosylase which recognizes an altered base in DNA and catalyzes its hydrolytic removal. This sugar phosphate is the substrate recognized by the AP endonuclease, which cuts the DNA phosphodiester backbone at the 5' side of the altered site to leave a gap which is subsequently repaired. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090320 biolink:NamedThing regulation of chylomicron remnant clearance Any process that modulates the rate, frequency or extent of chylomicron remnant clearance. Chylomicron clearance is the process in which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-30T10:20:26Z biological_process owl:Class GO:0080021 biolink:NamedThing response to benzoic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to benzoic acid stimulus biological_process owl:Class GO:0032553 biolink:NamedThing ribonucleotide binding Binding to a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007137 biolink:NamedThing meiotic metaphase II The cell cycle phase, following prophase II, during which chromosomes become aligned on the equatorial plate of the cell as part of meiosis II. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0093002 biolink:NamedThing response to nematicide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nematicide stimulus. Nematicides are chemicals used to kill nematodes. tmpzr1t_l9r_go_relaxed.owl response to nematocide|response to antihelmintic biological_process owl:Class GO:1901320 biolink:NamedThing negative regulation of heart induction Any process that stops, prevents or reduces the frequency, rate or extent of heart induction. tmpzr1t_l9r_go_relaxed.owl downregulation of heart induction|down-regulation of heart induction|down regulation of heart induction|inhibition of heart induction bf 2012-08-28T15:48:38Z biological_process owl:Class GO:0043099 biolink:NamedThing pyrimidine deoxyribonucleoside salvage Any process that generates a pyrimidine deoxyribonucleoside from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903228 biolink:NamedThing xanthosine catabolic process The chemical reactions and pathways resulting in the breakdown of xanthosine. tmpzr1t_l9r_go_relaxed.owl xanthosine catabolism|xanthosine degradation|xanthosine breakdown jl 2014-07-31T09:21:52Z biological_process owl:Class GO:1903227 biolink:NamedThing xanthosine metabolic process The chemical reactions and pathways involving xanthosine. tmpzr1t_l9r_go_relaxed.owl xanthosine metabolism jl 2014-07-31T09:21:46Z biological_process owl:Class GO:0015401 biolink:NamedThing urea:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: urea(out) + Na+(out) = urea(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl urea active transmembrane transporter activity molecular_function owl:Class GO:1905320 biolink:NamedThing regulation of mesenchymal stem cell migration Any process that modulates the frequency, rate or extent of mesenchymal stem cell migration. tmpzr1t_l9r_go_relaxed.owl sl 2016-07-15T22:19:14Z biological_process owl:Class GO:0016964 biolink:NamedThing alpha-2 macroglobulin receptor activity Combining with alpha-2 macroglobulin and delivering alpha-2 macroglobulin into the cell via receptor-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044060 biolink:NamedThing regulation of endocrine process Any process that modulates the frequency, rate or extent of an endocrine process, a process involving the secretion of or response to endocrine hormones. An endocrine hormone is a hormone released into the circulatory system. tmpzr1t_l9r_go_relaxed.owl regulation of endocrine system process biological_process owl:Class GO:0003345 biolink:NamedThing proepicardium cell migration involved in pericardium morphogenesis The coordinated movement of a mesenchymal proepicardial cell to the surface of the developing heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T10:49:32Z biological_process owl:Class GO:0021675 biolink:NamedThing nerve development The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017101 biolink:NamedThing aminoacyl-tRNA synthetase multienzyme complex A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA synthetase complex|multisynthetase complex cellular_component owl:Class GO:0048447 biolink:NamedThing sepal morphogenesis The process in which the anatomical structures of the sepal are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048422 biological_process owl:Class GO:0048444 biolink:NamedThing floral organ morphogenesis The process in which the anatomical structures of the floral organ are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048434 biological_process owl:Class GO:0140062 biolink:NamedThing 5-formylcytosine dioxygenase activity Catalysis of the reaction: 5-formylcytosine+ 2-oxoglutarate + O2 = 5-carboxylcytosine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl 5fC dioxygenase pg 2017-07-20T09:57:16Z molecular_function owl:Class GO:0015488 biolink:NamedThing glucuronide:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucuronide(out) + monovalent cation(out) = glucuronide(in) + monovalent cation(in). tmpzr1t_l9r_go_relaxed.owl glucuronide:monovalent cation symporter activity|glucuronoside permease activity molecular_function owl:Class GO:0015486 biolink:NamedThing glycoside-pentoside-hexuronide:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (glycoside, pentoside or hexuronide)(out) + monovalent cation(out) = (glycoside, pentoside or hexuronide)(in) + monovalent cation(in). The cation is Na+, Li+ or H+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060907 biolink:NamedThing positive regulation of macrophage cytokine production Any process that increases the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-04T02:32:18Z biological_process owl:Class GO:0061081 biolink:NamedThing positive regulation of myeloid leukocyte cytokine production involved in immune response Any process that modulates the rate, frequency, or extent of the production of a cytokine that contributes to the immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of myeloid cell cytokine production involved in immune response dph 2010-04-13T11:26:41Z biological_process owl:Class GO:0086029 biolink:NamedThing Purkinje myocyte to ventricular cardiac muscle cell signaling Any process that mediates the transfer of information from a Purkinje myocyte to a ventricular cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl Purkinje myocyte to ventricular cardiac muscle cell signalling tb 2011-11-11T02:02:14Z biological_process owl:Class GO:0001514 biolink:NamedThing selenocysteine incorporation The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation; it is not a posttranslational modification of peptidyl-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0022 biological_process owl:Class GO:0006451 biolink:NamedThing translational readthrough The continuation of translation beyond a stop codon by the use of a special tRNA that recognizes the UAG and UGA codons as modified amino acids, rather than as termination codons. tmpzr1t_l9r_go_relaxed.owl natural nonsense suppression biological_process owl:Class GO:0034256 biolink:NamedThing chlorophyll(ide) b reductase activity Catalysis of the reaction: 71-hydroxychlorophyll(ide) a + NAD(P)+ = chlorophyll(ide) b + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl Chl b reductase activity|chlorophyllide b reductase activity|chlorophyll b reductase activity MetaCyc:RXN-7678|EC:1.1.1.294 molecular_function owl:Class GO:0006581 biolink:NamedThing acetylcholine catabolic process The chemical reactions and pathways resulting in the breakdown of acetylcholine, the acetic acid ester of the organic base choline. tmpzr1t_l9r_go_relaxed.owl acetylcholine catabolism|acetylcholine degradation|acetylcholine breakdown biological_process owl:Class GO:0071610 biolink:NamedThing chemokine (C-C motif) ligand 1 production The appearance of chemokine (C-C motif) ligand 1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl T cell activation 3 production|CCL1 production|TCA-3 production mah 2010-02-05T04:35:00Z biological_process owl:Class GO:1905749 biolink:NamedThing regulation of endosome to plasma membrane protein transport Any process that modulates the frequency, rate or extent of endosome to plasma membrane protein transport. tmpzr1t_l9r_go_relaxed.owl pga 2016-12-09T13:46:13Z biological_process owl:Class GO:0060137 biolink:NamedThing maternal process involved in parturition A reproductive process occurring in the mother that results in birth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102427 biolink:NamedThing allocryptopine 6-hydroxylase activity Catalysis of the reaction: allocryptopine + NADPH + O2 + H+ <=> 6-hydroxy-allocryptopine + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13828 molecular_function owl:Class GO:0061838 biolink:NamedThing CENP-T-W-S-X complex A histone-variant containing protein complex which forms a centromere specific nucleosomal structure, involved in centromeric chromatin organization. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102321 biolink:NamedThing 2,2'-hydroxybiphenyl monooxygenase activity Catalysis of the reaction: biphenyl-2,2'-diol + O2 + NADH + H+ <=> biphenyl-2,2',3-triol + H2O + NAD. tmpzr1t_l9r_go_relaxed.owl RHEA:63512|EC:1.14.13.44|MetaCyc:MONOMER-17239 molecular_function owl:Class GO:0006078 biolink:NamedThing (1->6)-beta-D-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->6)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl 1,6-beta-glucan formation|beta-1,6 glucan biosynthesis|1,6-beta-glucan anabolism|beta-1,6 glucan formation|1,6-beta-glucan synthesis|beta-1,6 glucan biosynthetic process|beta-1,6 glucan anabolism|beta-1,6 glucan synthesis|1,6-beta-glucan biosynthetic process|1,6-beta-glucan biosynthesis biological_process owl:Class GO:0006077 biolink:NamedThing (1->6)-beta-D-glucan metabolic process The chemical reactions and pathways involving (1->6)-beta-D-glucans, compounds composed of glucose residues linked by (1->6)-beta-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl 1,6-beta-glucan metabolism|beta-1,6 glucan metabolism|beta-1,6 glucan metabolic process|1,6-beta-glucan metabolic process biological_process owl:Class GO:1900897 biolink:NamedThing negative regulation of heptadecane biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of heptadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of heptadecane biosynthesis|downregulation of heptadecane synthesis|inhibition of heptadecane biosynthetic process|negative regulation of heptadecane synthesis|inhibition of heptadecane formation|down regulation of heptadecane formation|inhibition of heptadecane biosynthesis|negative regulation of heptadecane formation|inhibition of heptadecane anabolism|downregulation of heptadecane biosynthesis|inhibition of heptadecane synthesis|down regulation of heptadecane synthesis|down-regulation of heptadecane formation|downregulation of heptadecane formation|downregulation of heptadecane biosynthetic process|down regulation of heptadecane biosynthesis|down regulation of heptadecane anabolism|down-regulation of heptadecane biosynthesis|down regulation of heptadecane biosynthetic process|down-regulation of heptadecane biosynthetic process|negative regulation of heptadecane anabolism|down-regulation of heptadecane synthesis|down-regulation of heptadecane anabolism|downregulation of heptadecane anabolism tt 2012-06-13T03:28:02Z biological_process owl:Class GO:0018925 biolink:NamedThing m-cresol metabolic process The chemical reactions and pathways involving m-cresol (3-hydroxytoluene), the meta-isoform of cresol. Used to produce agricultural chemicals, and in specialty resins, pharmaceuticals and pressure-sensitive dyes. tmpzr1t_l9r_go_relaxed.owl meta-cresol metabolism|3-hydroxytoluene metabolic process|meta-cresol metabolic process|m-cresol metabolism|3-hydroxytoluene metabolism UM-BBD_pathwayID:mcr|MetaCyc:M-CRESOL-DEGRADATION-PWY biological_process owl:Class GO:0042212 biolink:NamedThing cresol metabolic process The chemical reactions and pathways involving cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote. tmpzr1t_l9r_go_relaxed.owl hydroxytoluene metabolism|cresol metabolism|hydroxytoluene metabolic process biological_process owl:Class GO:0018724 biolink:NamedThing 4-phenanthrol sulfotransferase activity Catalysis of the reaction: 4-phenanthrol + X-SO3(-) = HX + 4-phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl 4-phenanthrol sulphotransferase activity UM-BBD_reactionID:r0562 molecular_function owl:Class GO:0019111 biolink:NamedThing phenanthrol sulfotransferase activity Catalysis of the reaction: phenanthrol + X-SO3(-) = HX + phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl phenanthrol sulphotransferase activity molecular_function owl:Class GO:0021870 biolink:NamedThing Cajal-Retzius cell differentiation The process in which a neuroblast acquires specialized structural and/or functional features of a Cajal-Retzius cell, one of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051542 biolink:NamedThing elastin biosynthetic process The chemical reactions and pathways resulting in the formation of elastin, a fibrous glycoprotein found in elastic tissues such as the walls of arteries. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051541 biolink:NamedThing elastin metabolic process The chemical reactions and pathways involving elastin, a glycoprotein which is randomly coiled and crosslinked to form elastic fibers that are found in connective tissue. tmpzr1t_l9r_go_relaxed.owl elastin metabolism biological_process owl:Class GO:0150151 biolink:NamedThing regulation of interleukin-17A production Any process that modulates the frequency, rate or extent of interleukin-17A production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-17A biosynthetic process bc 2019-12-11T07:44:52Z biological_process owl:Class GO:0070484 biolink:NamedThing dehydro-D-arabinono-1,4-lactone metabolic process The chemical reactions and pathways involving dehydro-D-arabinono-1,4-lactone, the gamma-lactone (5R)-3,4-dihydroxy-5-(hydroxymethyl)furan-2(5H)-one. tmpzr1t_l9r_go_relaxed.owl dehydro-D-arabinono-1,4-lactone metabolism biological_process owl:Class GO:0009793 biolink:NamedThing embryo development ending in seed dormancy The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl embryogenesis biological_process owl:Class GO:0106022 biolink:NamedThing positive regulation of vesicle docking Any process that activates or increases the frequency, rate or extent of vesicle docking. tmpzr1t_l9r_go_relaxed.owl positive regulation of vesicle to membrane docking hjd 2017-05-16T14:12:32Z biological_process owl:Class GO:1902943 biolink:NamedThing positive regulation of voltage-gated chloride channel activity Any process that activates or increases the frequency, rate or extent of voltage-gated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl upregulation of voltage-dependent chloride channel activity|up regulation of voltage-gated chloride channel activity|activation of voltage-dependent chloride channel activity|up-regulation of voltage-dependent chloride channel activity|positive regulation of voltage gated chloride channel activity|upregulation of voltage-gated chloride channel activity|upregulation of voltage gated chloride channel activity|positive regulation of voltage-dependent chloride channel activity|up regulation of voltage gated chloride channel activity|up regulation of voltage-dependent chloride channel activity|activation of voltage gated chloride channel activity|activation of voltage-gated chloride channel activity|up-regulation of voltage-gated chloride channel activity|up-regulation of voltage gated chloride channel activity als 2014-04-28T08:55:43Z biological_process owl:Class GO:2001146 biolink:NamedThing positive regulation of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Any process that activates or increases the frequency, rate or extent of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl yaf 2011-10-19T10:41:30Z biological_process owl:Class GO:0042174 biolink:NamedThing negative regulation of sporulation resulting in formation of a cellular spore Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation. tmpzr1t_l9r_go_relaxed.owl inhibition of sporulation|downregulation of sporulation|down regulation of sporulation|down-regulation of sporulation biological_process owl:Class GO:0042173 biolink:NamedThing regulation of sporulation resulting in formation of a cellular spore Any process that modulates the frequency, rate or extent of spore formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061103 biolink:NamedThing carotid body glomus cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a glomus cell of the carotid body. The carotid body is a specialized chemosensory organ that helps respond to hypoxia. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-28T10:59:24Z biological_process owl:Class GO:0010460 biolink:NamedThing positive regulation of heart rate Any process that activates or increases the frequency or rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120270 biolink:NamedThing regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts Any process that modulates the rate, frequency, or extent of selective degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18757 krc 2020-10-08T20:52:55Z biological_process owl:Class GO:0004121 biolink:NamedThing cystathionine beta-lyase activity Catalysis of the reaction: cystathionine + H2O = L-homocysteine + NH3 + pyruvate. tmpzr1t_l9r_go_relaxed.owl beta-cystathionase activity|cystine lyase activity|L-cystathionine L-homocysteine-lyase (deaminating; pyruvate-forming)|beta C-S lyase activity|L-cystathionine L-homocysteine-lyase (deaminating)|cystathionine L-homocysteine-lyase (deaminating) EC:4.4.1.8|RHEA:13965|MetaCyc:CYSTATHIONINE-BETA-LYASE-RXN GO:0008799 molecular_function owl:Class GO:0042139 biolink:NamedThing early meiotic recombination nodule assembly During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during leptotene and zygotene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007146 biolink:NamedThing meiotic recombination nodule assembly During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045842 biolink:NamedThing positive regulation of mitotic metaphase/anaphase transition Any process that activates or increases the frequency, rate or extent of the cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the activation of the anaphase promoting complex by Cdc20/Sleepy homolog which results in the degradation of Securin. tmpzr1t_l9r_go_relaxed.owl activation of mitotic metaphase/anaphase transition|stimulation of mitotic metaphase/anaphase transition|up regulation of mitotic metaphase/anaphase transition|up-regulation of mitotic metaphase/anaphase transition|upregulation of mitotic metaphase/anaphase transition biological_process owl:Class GO:0010132 biolink:NamedThing dhurrin biosynthetic process The chemical reactions and pathways resulting in the formation of dhurrin, a cyanogenic glucoside which functions as a plant defense compound. tmpzr1t_l9r_go_relaxed.owl dhurrin anabolism|dhurrin formation|dhurrin biosynthesis|dhurrin synthesis MetaCyc:PWY-861 biological_process owl:Class GO:1900311 biolink:NamedThing positive regulation of maltoheptaose metabolic process Any process that activates or increases the frequency, rate or extent of maltoheptaose metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of maltoheptaose metabolism|activation of maltoheptaose metabolic process|up regulation of maltoheptaose metabolism|up regulation of maltoheptaose metabolic process|positive regulation of maltoheptaose metabolism|up-regulation of maltoheptaose metabolism|up-regulation of maltoheptaose metabolic process|upregulation of maltoheptaose metabolic process|activation of maltoheptaose metabolism tt 2012-04-05T07:59:06Z biological_process owl:Class GO:0090084 biolink:NamedThing negative regulation of inclusion body assembly Any process that decreases the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:08:56Z biological_process owl:Class GO:0030793 biolink:NamedThing 3'-demethylstaurosporine O-methyltransferase activity Catalysis of the reaction: 3'-demethylstaurosporine + S-adenosyl-L-methionine = S-adenosyl-L-homocysteine + H(+) + staurosporine. tmpzr1t_l9r_go_relaxed.owl 3'-demethoxy-3'-hydroxystaurosporine O-methyltransferase activity|staurosporine synthase activity|S-adenosyl-L-methionine:3'-demethylstaurosporine O-methyltransferase activity KEGG_REACTION:R05757|MetaCyc:2.1.1.139-RXN|EC:2.1.1.139|RHEA:11696 molecular_function owl:Class GO:2001068 biolink:NamedThing arabinoxylan binding Binding to arabinoxylan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T11:58:38Z molecular_function owl:Class GO:0150176 biolink:NamedThing positive regulation of phosphatidylethanolamine metabolic process Any process that activates or increases the frequency, rate or extent of phosphatidylethanolamine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:04:32Z biological_process owl:Class GO:1903727 biolink:NamedThing positive regulation of phospholipid metabolic process Any process that activates or increases the frequency, rate or extent of phospholipid metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of phospholipid metabolism|up-regulation of phospholipid metabolic process|up regulation of phospholipid metabolic process|up regulation of phospholipid metabolism|activation of phospholipid metabolic process|upregulation of phospholipid metabolism|positive regulation of phospholipid metabolism|up-regulation of phospholipid metabolism|upregulation of phospholipid metabolic process sl 2014-12-09T20:49:44Z biological_process owl:Class GO:0046594 biolink:NamedThing maintenance of pole plasm mRNA location The process of maintaining mRNA in a specific location in the oocyte pole plasm. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl maintenance of pole plasm mRNA localization|maintenance of oocyte pole plasm mRNA localization GO:0048122 biological_process owl:Class GO:0051237 biolink:NamedThing maintenance of RNA location Any process in which RNA is maintained in a location and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of RNA localization|RNA retention biological_process owl:Class GO:0098887 biolink:NamedThing neurotransmitter receptor transport, endosome to postsynaptic membrane The directed movement of neurotransmitter receptor from the postsynaptic endosome to the postsynaptic membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl postsynaptic neurotransmitter receptor endosomal trafficking biological_process owl:Class GO:0098969 biolink:NamedThing neurotransmitter receptor transport to postsynaptic membrane The directed movement of neurotransmitter receptor to the postsynaptic membrane in transport vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071800 biolink:NamedThing podosome assembly The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T11:00:45Z biological_process owl:Class GO:0010749 biolink:NamedThing regulation of nitric oxide mediated signal transduction Any process that modulates the rate, frequency or extent of nitric oxide mediated signal transduction. Nitric oxide mediated signal transduction is a series of molecular signals mediated by the detection of nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl regulation of nitric oxide-mediated signal transduction biological_process owl:Class GO:0046504 biolink:NamedThing glycerol ether biosynthetic process The chemical reactions and pathways resulting in the formation of glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol ether anabolism|glycerol ether formation|glycerol ether biosynthesis|glycerol ether synthesis biological_process owl:Class GO:0034971 biolink:NamedThing histone H3-R17 methylation The modification of histone H3 by addition of a methyl group to arginine at position 17 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H3 R17 methylation|histone H3R17me|histone H3 R17 methylation biological_process owl:Class GO:1900092 biolink:NamedThing negative regulation of raffinose biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of raffinose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of raffinose anabolism|down-regulation of raffinose formation|downregulation of raffinose formation|down regulation of raffinose formation|inhibition of raffinose biosynthetic process|inhibition of raffinose anabolism|inhibition of raffinose biosynthesis|negative regulation of raffinose synthesis|downregulation of raffinose biosynthetic process|down-regulation of raffinose biosynthetic process|down regulation of raffinose anabolism|inhibition of raffinose synthesis|downregulation of raffinose synthesis|down-regulation of raffinose anabolism|down-regulation of raffinose biosynthesis|inhibition of raffinose formation|down regulation of raffinose synthesis|down regulation of raffinose biosynthesis|downregulation of raffinose biosynthesis|downregulation of raffinose anabolism|down regulation of raffinose biosynthetic process|negative regulation of raffinose biosynthesis|negative regulation of raffinose formation|down-regulation of raffinose synthesis dhl 2012-02-08T06:31:58Z biological_process owl:Class GO:0071500 biolink:NamedThing cellular response to nitrosative stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:49:46Z biological_process owl:Class GO:0005550 biolink:NamedThing pheromone binding Binding to a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005549 biolink:NamedThing odorant binding Binding to an odorant, any substance capable of stimulating the sense of smell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071201 biolink:NamedThing Kv4.3-DPP6 channel complex A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.3. tmpzr1t_l9r_go_relaxed.owl Kv4.3-DPPX channel complex CORUM:599 mah 2009-11-23T05:20:54Z cellular_component owl:Class GO:0033471 biolink:NamedThing GDP-L-galactose metabolic process The chemical reactions and pathways involving GDP-L-galactose, a substance composed of L-galactose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-L-galactose metabolism biological_process owl:Class GO:0002829 biolink:NamedThing negative regulation of type 2 immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of a type 2 immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-helper 2 type immune response|down-regulation of type 2 immune response|negative regulation of Th2 immune response|inhibition of type 2 immune response|down regulation of type 2 immune response|downregulation of type 2 immune response biological_process owl:Class GO:0031358 biolink:NamedThing intrinsic component of chloroplast outer membrane The component of the chloroplast outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to chloroplast outer membrane cellular_component owl:Class GO:0031354 biolink:NamedThing intrinsic component of plastid outer membrane The component of the plastid outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to plastid outer membrane cellular_component owl:Class GO:0048779 biolink:NamedThing negative regulation of erythrophore differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of erythrophore differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of erythrophore differentiation|down-regulation of erythrophore differentiation|inhibition of erythrophore differentiation|downregulation of erythrophore differentiation biological_process owl:Class GO:0050941 biolink:NamedThing negative regulation of pigment cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of pigment cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of pigment cell differentiation|down-regulation of pigment cell differentiation|down regulation of pigment cell differentiation|inhibition of pigment cell differentiation biological_process owl:Class GO:0004965 biolink:NamedThing G protein-coupled GABA receptor activity Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl GABA-B receptor activity|G-protein coupled GABA receptor activity|metabotropic GABA receptor Reactome:R-HSA-1013012|Reactome:R-HSA-1013013 molecular_function owl:Class GO:0006139 biolink:NamedThing nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism|nucleobase, nucleoside, nucleotide and nucleic acid metabolism|nucleobase, nucleoside and nucleotide metabolic process GO:0055134 biological_process owl:Class GO:0150014 biolink:NamedThing apical distal dendrite Any dendrite in a dendritic tree that emerges near the apical pole of a neuron, and which is farthest away from the neuronal cell body (the soma). tmpzr1t_l9r_go_relaxed.owl bc 2017-12-21T12:03:28Z cellular_component owl:Class GO:0097440 biolink:NamedThing apical dendrite A dendrite that emerges near the apical pole of a neuron. In bipolar neurons, apical dendrites are located on the opposite side of the soma from the axon. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao273773228 pr 2012-12-06T13:45:18Z cellular_component owl:Class GO:0008540 biolink:NamedThing proteasome regulatory particle, base subcomplex The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018659 biolink:NamedThing 4-hydroxybenzoate 3-monooxygenase activity Catalysis of the reaction: 4-hydroxybenzoate + NADPH + H+ + O2 = protocatechuate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl p-hydroxybenzoic acid hydroxylase activity|p-hydroxybenzoate hydroxylase activity|4-hydroxybenzoate,NADPH:oxygen oxidoreductase (3-hydroxylating)|4-hydroxybenzoate monooxygenase activity|p-hydroxybenzoic acid hydrolase activity|p-hydroxybenzoic hydroxylase activity|para-hydroxybenzoate hydroxylase activity|p-hydroxybenzoate-3-hydroxylase activity|4-hydroxybenzoate 3-hydroxylase activity|p-hydroxybenzoate hydrolyase activity EC:1.14.13.2|MetaCyc:4-HYDROXYBENZOATE-3-MONOOXYGENASE-RXN|UM-BBD_reactionID:r0109 molecular_function owl:Class GO:0097385 biolink:NamedThing programmed necrotic cell death in response to starvation A programmed necrotic cell death occurring as a result of a starvation stimulus (deprivation of nourishment). tmpzr1t_l9r_go_relaxed.owl necrotic cell death in response to starvation pr 2012-10-22T09:02:18Z biological_process owl:Class GO:2000945 biolink:NamedThing regulation of amylopectin catabolic process Any process that modulates the frequency, rate or extent of amylopectin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of Amylopectin catabolism tt 2011-08-01T02:15:22Z biological_process owl:Class GO:0000435 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by galactose Any process involving galactose that activates or increases the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription from RNA polymerase II promoter by galactose|up regulation of transcription from RNA polymerase II promoter by galactose|activation of transcription from RNA polymerase II promoter by galactose|stimulation of transcription from RNA polymerase II promoter by galactose|upregulation of transcription from RNA polymerase II promoter by galactose biological_process owl:Class GO:0000431 biolink:NamedThing regulation of transcription from RNA polymerase II promoter by galactose Any process involving galactose that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070687 biolink:NamedThing macropinocytic cup cytoskeleton The part of the cortical actin cytoskeleton that forms part of a macropinocytic cup. tmpzr1t_l9r_go_relaxed.owl crown cytoskeleton mah 2009-06-03T10:59:50Z cellular_component owl:Class GO:0071886 biolink:NamedThing 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding Binding to the amine 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine, a serotonin receptor agonist that can act as a psychedelic drug. tmpzr1t_l9r_go_relaxed.owl 1-(4-iodo-2,5-dimethoxyphenyl)-2-aminopropane binding|(+/-)2-(4-iodo-2,5-dimethoxy-phenyl)-1-methyl-ethylamine binding|4-iodo-2,5-dimethoxyphenylisopropylamine binding mah 2010-09-14T12:29:36Z molecular_function owl:Class GO:0043176 biolink:NamedThing amine binding Binding to an amine, a weakly basic organic compound that contains an amino or a substituted amino group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060863 biolink:NamedThing regulation of floral organ abscission by signal transduction The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately modulating the rate, or extent of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T04:07:41Z biological_process owl:Class GO:0033059 biolink:NamedThing cellular pigmentation The deposition or aggregation of coloring matter in a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098528 biolink:NamedThing skeletal muscle fiber differentiation The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle fiber cell. Skeletal muscle fiber differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual skeletal muscle fibers fuse to form bigger myotubes and start to contract. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-15T14:00:34Z biological_process owl:Class GO:0035914 biolink:NamedThing skeletal muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T02:36:19Z biological_process owl:Class GO:0051658 biolink:NamedThing maintenance of nucleus location Any process in which the nucleus is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of nucleus localization|maintenance of cell nucleus location biological_process owl:Class GO:0006287 biolink:NamedThing base-excision repair, gap-filling Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904937 biolink:NamedThing sensory neuron migration The orderly movement of a sensory neuron from one site to another. tmpzr1t_l9r_go_relaxed.owl ah 2016-02-01T14:15:50Z biological_process owl:Class GO:1904539 biolink:NamedThing negative regulation of glycolytic process through fructose-6-phosphate Any process that stops, prevents or reduces the frequency, rate or extent of glycolytic process through fructose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl downregulation of glycolytic process through fructose-6-phosphate|downregulation of glycolysis through fructose-6-phosphate|negative regulation of glycolysis through fructose-6-phosphate|down regulation of glycolysis through fructose-6-phosphate|down-regulation of glycolysis through fructose-6-phosphate|inhibition of glycolysis through fructose-6-phosphate|down regulation of glycolytic process through fructose-6-phosphate|down-regulation of glycolytic process through fructose-6-phosphate|inhibition of glycolytic process through fructose-6-phosphate dph 2015-08-07T11:35:16Z biological_process owl:Class GO:2000629 biolink:NamedThing negative regulation of miRNA metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of miRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of microRNA metabolic process dph 2011-04-18T03:47:58Z biological_process owl:Class GO:0042587 biolink:NamedThing glycogen granule Cytoplasmic bead-like structures of animal cells, visible by electron microscope. Each granule is a functional unit with the biosynthesis and catabolism of glycogen being catalyzed by enzymes bound to the granule surface. tmpzr1t_l9r_go_relaxed.owl glycogen particle NIF_Subcellular:sao1081228141 cellular_component owl:Class GO:0019749 biolink:NamedThing cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte The directed movement of substances along cytoskeletal elements, such as microfilaments or microtubules, from a nurse cell to an oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032741 biolink:NamedThing positive regulation of interleukin-18 production Any process that activates or increases the frequency, rate, or extent of interleukin-18 production. tmpzr1t_l9r_go_relaxed.owl upregulation of interleukin-18 production|positive regulation of interleukin-18 biosynthetic process|stimulation of interleukin-18 production|positive regulation of interleukin-18 secretion|up regulation of interleukin-18 production|positive regulation of IL-18 production|up-regulation of interleukin-18 production|activation of interleukin-18 production GO:0150122|GO:0045383 biological_process owl:Class GO:0045328 biolink:NamedThing cytochrome P450 4A1-heme linkage The covalent linkage of heme to cytochrome P450 4A1 via hydroxyheme-L-glutamyl ester. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 4A1-haem linkage RESID:AA0324 biological_process owl:Class GO:0046069 biolink:NamedThing cGMP catabolic process The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate. tmpzr1t_l9r_go_relaxed.owl cGMP breakdown|cGMP degradation|cGMP catabolism biological_process owl:Class GO:0046338 biolink:NamedThing phosphatidylethanolamine catabolic process The chemical reactions and pathways resulting in the breakdown of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine catabolism|phosphatidylethanolamine degradation|phosphatidylethanolamine breakdown biological_process owl:Class GO:0016586 biolink:NamedThing RSC-type complex A SWI/SNF-type complex that contains a bromodomain containing-protein, such as yeast Rsc1 or Rsc4 or mammalian PB1/BAF180. The RSC complex is generally recruited to RNA polymerase III promoters and is specifically recruited to RNA polymerase II promoters by transcriptional activators and repressors; it is also involved in non-homologous end joining. tmpzr1t_l9r_go_relaxed.owl Polybromo- and BAF containing complex|PBAF complex|SWI/SNF complex B https://github.com/geneontology/go-ontology/issues/14106 mah 2009-04-29T01:07:26Z GO:0070604 cellular_component owl:Class GO:1905861 biolink:NamedThing intranuclear rod assembly The aggregation, arrangement and bonding together of a set of components to form an intranuclear rod. tmpzr1t_l9r_go_relaxed.owl intranuclear actin rod formation|intranuclear actin rod assembly|intranuclear rod formation dph 2017-01-23T17:59:27Z biological_process owl:Class GO:0042150 biolink:NamedThing plasmid recombination A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060518 biolink:NamedThing cell migration involved in prostatic bud elongation The orderly movement of epithelial cells from one site to another contributing to the elongation of the primary prostatic bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990733 biolink:NamedThing titin-telethonin complex A protein complex formed between the N-terminus of the giant sarcomeric filament protein titin and the Z-disk ligand, telethonin. The complex is part of the Z-disk of the skeletal and cardiac sarcomere. Telethonin binding to titin might be essential for the initial assembly, stabilization and functional integrity of the titin filament, and hence important for muscle contraction relaxation in mature myofibrils. tmpzr1t_l9r_go_relaxed.owl Titin-Tcap complex An example of this are TTN and TCAP in human (UniProt symbols Q8WZ42 and O15273 respectively) in PMID:16407954 (inferred from direct assay). ame 2015-04-24T14:57:08Z cellular_component owl:Class GO:0020023 biolink:NamedThing kinetoplast A sub-structure within the large single mitochondrion of kinetoplastid parasites and which is closely associated with the flagellar pocket and basal body of the flagellum. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Kinetoplast cellular_component owl:Class GO:0043494 biolink:NamedThing CLRC complex An cullin-dependent E3 ubiquitin ligase/histone H3-K9 methyltransferase complex essential for heterochromatin assembly by RNAi. tmpzr1t_l9r_go_relaxed.owl Rik1-E3 ubiquitin ligase complex|CLRC ubiquitin ligase complex|Rik1 E3 ubiquitin ligase complex|Clr4-Rik1-Cul4 complex cellular_component owl:Class GO:0070104 biolink:NamedThing negative regulation of interleukin-6-mediated signaling pathway Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6 binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of IL-6-mediated signaling pathway|negative regulation of interleukin-6-mediated signalling pathway biological_process owl:Class GO:0045876 biolink:NamedThing positive regulation of sister chromatid cohesion Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion. tmpzr1t_l9r_go_relaxed.owl up regulation of sister chromatid cohesion|upregulation of sister chromatid cohesion|up-regulation of sister chromatid cohesion|stimulation of sister chromatid cohesion|activation of sister chromatid cohesion biological_process owl:Class GO:0019811 biolink:NamedThing cocaine binding Binding to cocaine (2-beta-carbomethoxy-3-beta-benzoxytropane), an alkaloid obtained from dried leaves of the South American shrub Erythroxylon coca or by chemical synthesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046335 biolink:NamedThing ethanolamine biosynthetic process The chemical reactions and pathways resulting in the formation of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). tmpzr1t_l9r_go_relaxed.owl ethanolamine anabolism|ethanolamine formation|ethanolamine biosynthesis|ethanolamine synthesis biological_process owl:Class GO:0106108 biolink:NamedThing negative regulation of (R)-mevalonic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of (R)-mevalonic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-03-27T14:15:55Z biological_process owl:Class GO:0042040 biolink:NamedThing metal incorporation into metallo-molybdopterin complex The incorporation of a metal into a metallo-molybdopterin complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010913 biolink:NamedThing regulation of sterigmatocystin biosynthetic process Any process that modulates the rate, frequency, or extent of sterigmatocystin biosynthesis. Sterigmatocystin biosynthetic processes are the chemical reactions and pathways resulting in the formation of sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002523 biolink:NamedThing leukocyte migration involved in inflammatory response The movement of a leukocyte within or between different tissues and organs of the body contributing to an inflammatory response. tmpzr1t_l9r_go_relaxed.owl leukocyte migration during inflammatory response|leucocyte trafficking during inflammatory response|leukocyte trafficking during inflammatory response|immune cell trafficking during inflammatory response|immune cell migration during inflammatory response|leucocyte migration during inflammatory response biological_process owl:Class GO:1902125 biolink:NamedThing (+)-pinoresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-pinoresinol. tmpzr1t_l9r_go_relaxed.owl (+)-pinoresinol breakdown|(+)-pinoresinol catabolism|(+)-pinoresinol degradation ms 2013-05-21T08:49:23Z biological_process owl:Class GO:0060618 biolink:NamedThing nipple development The progression of the nipple over time, from its formation to the mature structure. The nipple is a part of the mammary gland that protrudes from the surface ectoderm. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T09:29:38Z biological_process owl:Class GO:0060909 biolink:NamedThing regulation of DNA replication initiation involved in plasmid copy number maintenance Any process that modulates the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-04T02:51:48Z biological_process owl:Class GO:1904654 biolink:NamedThing negative regulation of lung alveolus development Any process that stops, prevents or reduces the frequency, rate or extent of lung alveolus development. tmpzr1t_l9r_go_relaxed.owl down-regulation of alveolarization|down regulation of alveolarization|inhibition of alveologenesis|down-regulation of alveologenesis|down regulation of alveologenesis|downregulation of alveologenesis|down regulation of lung alveolus development|downregulation of alveolarization|negative regulation of alveolarization|down-regulation of lung alveolus development|inhibition of lung alveolus development|negative regulation of alveologenesis|inhibition of alveolarization|downregulation of lung alveolus development sl 2015-09-03T22:44:50Z biological_process owl:Class GO:1904653 biolink:NamedThing regulation of lung alveolus development Any process that modulates the frequency, rate or extent of lung alveolus development. tmpzr1t_l9r_go_relaxed.owl regulation of alveologenesis|regulation of alveolarization sl 2015-09-03T22:44:44Z biological_process owl:Class GO:0071464 biolink:NamedThing cellular response to hydrostatic pressure Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. tmpzr1t_l9r_go_relaxed.owl cellular response to static fluid pressure|cellular response to biomechanical stress mah 2009-12-18T11:34:07Z biological_process owl:Class GO:0001898 biolink:NamedThing regulation of cytolysis by symbiont of host cells Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of cytolysis of host cells biological_process owl:Class GO:0015306 biolink:NamedThing sialate:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sialate(out) + cation(out) = sialate(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl cation:sialate symporter activity|cation/sialate symporter activity|sialate/cation symporter activity|sialate transporter activity molecular_function owl:Class GO:1903805 biolink:NamedThing L-valine import across plasma membrane The directed movement of L-valine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl valine import|L-valine import into cell tb 2012-09-24T14:28:58Z GO:0090468 biological_process owl:Class GO:0045822 biolink:NamedThing negative regulation of heart contraction Any process that stops, prevents, or reduces the frequency, rate or extent of heart contraction. tmpzr1t_l9r_go_relaxed.owl negative regulation of cardiac contraction|downregulation of heart contraction|down-regulation of heart contraction|inhibition of heart contraction|down regulation of heart contraction biological_process owl:Class GO:0061296 biolink:NamedThing negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis Any process that reduces the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl negative regulation of mesenchymal stem cell apoptotic process involved in mesonephric nephron morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis dph 2010-09-06T09:54:49Z biological_process owl:Class GO:0060803 biolink:NamedThing BMP signaling pathway involved in mesodermal cell fate specification A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to a cell becoming specified to adopt a mesodermal fate. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in mesodermal cell fate specification dph 2009-08-06T01:47:39Z biological_process owl:Class GO:0018553 biolink:NamedThing 3-(2,3-dihydroxyphenyl)propionate 1,2-dioxygenase activity Catalysis of the reaction: 3-(2,3-dihydroxyphenyl)propionate + O2 = 2-hydroxy-6-keto-nona-2,4-dienedioate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0309 molecular_function owl:Class GO:0038192 biolink:NamedThing gastric inhibitory peptide signaling pathway The series of molecular signals generated as a consequence of a gastric inhibitory peptide (GIP) binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl glucose-dependent insulinotropic polypeptide signaling|gastric inhibitory polypeptide receptor signaling pathway|GIP signaling bf 2013-09-02T15:57:49Z biological_process owl:Class GO:0032648 biolink:NamedThing regulation of interferon-beta production Any process that modulates the frequency, rate, or extent of interferon-beta production. tmpzr1t_l9r_go_relaxed.owl regulation of IFN-beta production|regulation of interferon-beta biosynthetic process|regulation of interferon-beta secretion GO:0035547|GO:0045357 biological_process owl:Class GO:1901981 biolink:NamedThing phosphatidylinositol phosphate binding Binding to phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-12T18:21:22Z molecular_function owl:Class GO:0035091 biolink:NamedThing phosphatidylinositol binding Binding to an inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. tmpzr1t_l9r_go_relaxed.owl phosphoinositide binding molecular_function owl:Class GO:0010872 biolink:NamedThing regulation of cholesterol esterification Any process that modulates the frequency, rate or extent of cholesterol esterification. Cholesterol esterification is the lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and cholesterol. In the blood this process is associated with the conversion of free cholesterol into cholesteryl ester, which is then sequestered into the core of a lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019500 biolink:NamedThing cyanide catabolic process The chemical reactions and pathways resulting in the breakdown of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration. tmpzr1t_l9r_go_relaxed.owl cyanide degradation|cyanide breakdown|cyanide catabolism MetaCyc:P401-PWY biological_process owl:Class GO:0019499 biolink:NamedThing cyanide metabolic process The chemical reactions and pathways involving cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration, reacting with the ferric form of cytochrome aa3 and thus blocking the electron transport chain. tmpzr1t_l9r_go_relaxed.owl cyanide metabolism biological_process owl:Class GO:0071561 biolink:NamedThing nucleus-vacuole junction An organelle membrane contact site formed between the vacuole membrane and the outer nuclear membrane. In S. cerevisiae these contacts are mediated through direct physical interaction between Vac8p and Nvj1p. tmpzr1t_l9r_go_relaxed.owl NV junction|nucleus-vacuole membrane contact site|NVJ mah 2010-01-20T02:09:42Z cellular_component owl:Class GO:0009300 biolink:NamedThing antisense RNA transcription The synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018154 biolink:NamedThing peptide cross-linking via (2R,6R)-lanthionine The formation of a protein-protein cross-link between peptidyl-serine and peptidyl-cysteine by the synthesis of (2R,6R)-lanthionine (L-lanthionine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0110 biological_process owl:Class GO:0098538 biolink:NamedThing lumenal side of transport vesicle membrane The side (leaflet) of the transport vesicle membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal side of transport vesicle membrane dos 2013-10-24T11:43:55Z cellular_component owl:Class GO:0008875 biolink:NamedThing gluconate dehydrogenase activity Catalysis of the reaction: D-gluconate + NADP+ = dehydro-D-gluconate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004459 biolink:NamedThing L-lactate dehydrogenase activity Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl L-lactic dehydrogenase activity|L-lactic acid dehydrogenase activity EC:1.1.1.27|Reactome:R-HSA-6807826|Reactome:R-HSA-70510|RHEA:23444|Reactome:R-HSA-71849|MetaCyc:L-LACTATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0010947 biolink:NamedThing negative regulation of meiotic joint molecule formation Any process that decreases the frequency, rate or extent of meiotic joint molecule formation. Meiotic joint molecule formation is the conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T09:48:53Z biological_process owl:Class GO:0047498 biolink:NamedThing calcium-dependent phospholipase A2 activity Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. This reaction requires Ca2+. tmpzr1t_l9r_go_relaxed.owl calcium-dependent cytosolic phospholipase A2 activity|calcium-dependent secreted phospholipase A2 activity Reactome:R-HSA-111883 molecular_function owl:Class GO:0016597 biolink:NamedThing amino acid binding Binding to an amino acid, organic acids containing one or more amino substituents. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060457 biolink:NamedThing negative regulation of digestive system process Any process that decreases the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043722 biolink:NamedThing 4-hydroxyphenylacetate decarboxylase activity Catalysis of the reaction: (4-hydroxyphenyl)acetate + H(+) = 4-cresol + CO(2). tmpzr1t_l9r_go_relaxed.owl 4-(hydroxyphenyl)acetate carboxy-lyase (4-methylphenol-forming)|p-Hpd activity|p-hydroxyphenylacetate decarboxylase activity|4-Hpd activity|4-hydroxyphenylacetate carboxy-lyase activity EC:4.1.1.83|RHEA:22732|MetaCyc:4.1.1.83-RXN|KEGG_REACTION:R07312 molecular_function owl:Class GO:0004616 biolink:NamedThing phosphogluconate dehydrogenase (decarboxylating) activity Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 6-phospho-D-gluconate dehydrogenase activity|6-phosphogluconic dehydrogenase activity|6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)|phosphogluconic acid dehydrogenase activity|6-phosphogluconate dehydrogenase (decarboxylating)|6PGD activity|6-phosphogluconic carboxylase activity EC:1.1.1.44|MetaCyc:6PGLUCONDEHYDROG-RXN|Reactome:R-HSA-71299|RHEA:10116 molecular_function owl:Class GO:0019826 biolink:NamedThing oxygen sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of oxygen (O2). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019825 biolink:NamedThing oxygen binding Binding to oxygen (O2). tmpzr1t_l9r_go_relaxed.owl cytochrome P450 activity|cytochrome P450 molecular_function owl:Class GO:0102710 biolink:NamedThing D-inositol-3-phosphate glycosyltransferase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-glucosamine + 1D-myo-inositol 3-phosphate = 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphate + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6501|RHEA:26188|EC:2.4.1.250 molecular_function owl:Class GO:0043794 biolink:NamedThing formate dehydrogenase (coenzyme F420) activity Catalysis of the reaction: formate + coenzyme F420 = CO2 + reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl formate dehydrogenase (F420) activity EC:1.2.99.- molecular_function owl:Class GO:0001561 biolink:NamedThing fatty acid alpha-oxidation A metabolic pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-2501 biological_process owl:Class GO:0019395 biolink:NamedThing fatty acid oxidation The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. tmpzr1t_l9r_go_relaxed.owl MetaCyc:FAO-PWY biological_process owl:Class GO:0036039 biolink:NamedThing curcumin metabolic process The chemical reactions and pathways involving the polyphenol, curcumin. tmpzr1t_l9r_go_relaxed.owl turmeric yellow metabolic process|(1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione metabolic process|turmeric yellow metabolism|diferuloylmethane metabolism|(1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione metabolism|curcumin metabolism|diferuloylmethane metabolic process bf 2011-11-22T01:58:57Z biological_process owl:Class GO:0047425 biolink:NamedThing 1-pyrroline-4-hydroxy-2-carboxylate deaminase activity Catalysis of the reaction: 4-hydroxy-1-pyrroline-2-carboxylate + H(2)O + H(+) = 2,5-dioxopentanoate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 1-pyrroline-4-hydroxy-2-carboxylate aminohydrolase (decyclizing)|HPC deaminase activity KEGG_REACTION:R02280|MetaCyc:3.5.4.22-RXN|EC:3.5.4.22|RHEA:10560 molecular_function owl:Class GO:1900281 biolink:NamedThing positive regulation of CD4-positive, alpha-beta T cell costimulation Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell costimulation. tmpzr1t_l9r_go_relaxed.owl upregulation of CD4-positive, alpha beta T cell costimulation|up-regulation of CD4-positive, alpha beta T cell costimulation|activation of CD4-positive, alpha beta T cell costimulation|positive regulation of CD4-positive, alpha beta T cell costimulation|up regulation of CD4-positive, alpha beta T cell costimulation rl 2012-04-04T08:56:45Z biological_process owl:Class GO:0008869 biolink:NamedThing galactonate dehydratase activity Catalysis of the reaction: D-galactonate = 2-dehydro-3-deoxy-D-galactonate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-galactonate hydro-lyase (2-dehydro-3-deoxy-D-galactonate-forming)|D-galactonate hydro-lyase activity|D-galactonate dehydrase activity|D-galactonate dehydratase activity KEGG_REACTION:R03033|RHEA:18649|EC:4.2.1.6|MetaCyc:GALACTONDEHYDRAT-RXN molecular_function owl:Class GO:0008190 biolink:NamedThing eukaryotic initiation factor 4E binding Binding to eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation. tmpzr1t_l9r_go_relaxed.owl eIF4E binding molecular_function owl:Class GO:0035425 biolink:NamedThing autocrine signaling Signaling between cells of the same type. The signal produced by the signaling cell binds to a receptor on, and affects a cell of the same type. tmpzr1t_l9r_go_relaxed.owl autocrine signalling bf 2010-03-29T02:15:52Z biological_process owl:Class GO:0050482 biolink:NamedThing arachidonic acid secretion The controlled release of arachidonic acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl This term should be used to annotate release of arachidonic acid from the cell. For the hydrolytic release of arachidonic acid from a phospholipid, consider instead annotating to 'phospholipase A2 activity ; GO:0004623'. biological_process owl:Class GO:1903963 biolink:NamedThing arachidonate transport The directed movement of an arachidonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl arachidonic acid transport bhm 2015-02-25T16:06:14Z biological_process owl:Class GO:0043281 biolink:NamedThing regulation of cysteine-type endopeptidase activity involved in apoptotic process Any process that modulates the activity of a cysteine-type endopeptidase involved in apoptosis. tmpzr1t_l9r_go_relaxed.owl regulation of caspase activity|regulation of caspase activation GO:0043026 biological_process owl:Class GO:0002772 biolink:NamedThing inhibitory C-type lectin receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to an inhibitory C-type lectin receptor capable of inhibiting an immune effector process contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl inhibitory C-type lectin receptor signalling pathway|Ly49 inhibitory receptor signaling pathway biological_process owl:Class GO:0030666 biolink:NamedThing endocytic vesicle membrane The lipid bilayer surrounding an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030128 biolink:NamedThing clathrin coat of endocytic vesicle A clathrin coat found on an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin coat of endocytotic vesicle cellular_component owl:Class GO:0006784 biolink:NamedThing heme A biosynthetic process The chemical reactions and pathways resulting in the formation of heme A, a derivative of heme found in cytochrome aa3. tmpzr1t_l9r_go_relaxed.owl heme A anabolism|heme A formation|heme A biosynthesis|haem A biosynthesis|heme A synthesis|haem A biosynthetic process biological_process owl:Class GO:2000295 biolink:NamedThing regulation of hydrogen peroxide catabolic process Any process that modulates the frequency, rate or extent of hydrogen peroxide catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen peroxide degradation|regulation of H2O2 catabolic process|regulation of H2O2 scavenging|regulation of hydrogen peroxide scavenging|regulation of hydrogen peroxide catabolism|regulation of detoxification of H2O2|regulation of hydrogen peroxide breakdown|regulation of hydrogen peroxide removal|regulation of detoxification of hydrogen peroxide rl 2010-12-21T03:30:51Z biological_process owl:Class GO:0009560 biolink:NamedThing embryo sac egg cell differentiation The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl female gametophyte egg cell differentiation|female gamete generation GO:0048233 biological_process owl:Class GO:0070417 biolink:NamedThing cellular response to cold Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl cellular response to cold stress biological_process owl:Class GO:0009409 biolink:NamedThing response to cold Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl freezing tolerance biological_process owl:Class GO:1902916 biolink:NamedThing positive regulation of protein polyubiquitination Any process that activates or increases the frequency, rate or extent of protein polyubiquitination. tmpzr1t_l9r_go_relaxed.owl upregulation of protein polyubiquitylation|activation of protein polyubiquitylation|activation of protein polyubiquitinylation|up regulation of protein polyubiquitinylation|upregulation of protein polyubiquitinylation|positive regulation of polyubiquitin|upregulation of polyubiquitin|activation of protein polyubiquitination|up-regulation of protein polyubiquitylation|up regulation of protein polyubiquitylation|positive regulation of protein polyubiquitinylation|up-regulation of protein polyubiquitination|positive regulation of protein polyubiquitylation|up regulation of protein polyubiquitination|activation of polyubiquitin|up-regulation of protein polyubiquitinylation|upregulation of protein polyubiquitination|up regulation of polyubiquitin|up-regulation of polyubiquitin di 2014-04-18T22:10:04Z biological_process owl:Class GO:0004940 biolink:NamedThing beta1-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta1-adrenergic receptors. tmpzr1t_l9r_go_relaxed.owl beta1 adrenoceptor molecular_function owl:Class GO:0042622 biolink:NamedThing photoreceptor outer segment membrane The membrane surrounding the outer segment of a vertebrate photoreceptor. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033640 biolink:NamedThing modulation by symbiont of host response to osmotic stress Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070208 biolink:NamedThing protein heterotrimerization The formation of a protein heterotrimer, a macromolecular structure consisting of three noncovalently associated subunits, of which not all are identical. tmpzr1t_l9r_go_relaxed.owl protein heterotrimer formation|protein heterotrimer biosynthetic process|protein heterotrimer assembly|protein heterotrimer biosynthesis biological_process owl:Class GO:1901413 biolink:NamedThing regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process from glycine and succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|regulation of tetrapyrrole formation from glycine and succinyl-CoA|regulation of tetrapyrrole synthesis from glycine and succinyl-CoA tt 2012-10-01T16:27:43Z biological_process owl:Class GO:1900542 biolink:NamedThing regulation of purine nucleotide metabolic process Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of purine metabolism|regulation of purine metabolic process|regulation of purine nucleotide metabolism krc 2012-05-11T05:43:15Z biological_process owl:Class GO:0097052 biolink:NamedThing L-kynurenine metabolic process The chemical reactions and pathways involving L-kynurenine, the L-enantiomer of the amino acid kynurenine (3-(2-aminobenzoyl)-alanine). tmpzr1t_l9r_go_relaxed.owl L-kynurenine metabolism pr 2011-05-24T03:28:44Z biological_process owl:Class GO:0009384 biolink:NamedThing N-acylmannosamine kinase activity Catalysis of the reaction: ATP + N-acyl-D-mannosamine = ADP + N-acyl-D-mannosamine 6-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetylmannosamine kinase activity|N-acyl-D-mannosamine kinase activity|acetylmannosamine kinase activity|ATP:N-acyl-D-mannosamine 6-phosphotransferase activity|acylaminodeoxymannokinase activity|acylmannosamine kinase activity|ATP:N-acetylmannosamine 6-phosphotransferase activity|acetylamidodeoxymannokinase activity|acylmannosamine kinase (phosphorylating) RHEA:23832|MetaCyc:N-ACYLMANNOSAMINE-KINASE-RXN|Reactome:R-HSA-4088322|Reactome:R-HSA-4085028|EC:2.7.1.60 molecular_function owl:Class GO:0044577 biolink:NamedThing xylose catabolic process to ethanol The anaerobic chemical reactions and pathways resulting in the breakdown of xylose, an aldopentose, where one of the resulting products is ethanol. tmpzr1t_l9r_go_relaxed.owl xylose catabolism to ethanol jl 2012-04-19T03:50:46Z biological_process owl:Class GO:0042843 biolink:NamedThing D-xylose catabolic process The chemical reactions and pathways resulting in the breakdown of D-xylose, a naturally occurring plant polysaccharide. tmpzr1t_l9r_go_relaxed.owl D-xylose catabolism|D-xylose degradation|D-xylose breakdown biological_process owl:Class GO:1902829 biolink:NamedThing regulation of spinal cord association neuron differentiation Any process that modulates the frequency, rate or extent of spinal cord association neuron differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of spinal cord dorsal interneuron differentiation mr 2014-03-31T17:10:55Z biological_process owl:Class GO:0051272 biolink:NamedThing positive regulation of cellular component movement Any process that activates or increases the frequency, rate or extent of the movement of a cellular component. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular component motion biological_process owl:Class GO:1901903 biolink:NamedThing tyrocidine catabolic process The chemical reactions and pathways resulting in the breakdown of tyrocidine. tmpzr1t_l9r_go_relaxed.owl tyrocidine catabolism|tyrocidine breakdown|tyrocidine degradation yaf 2013-02-12T23:40:34Z biological_process owl:Class GO:0045036 biolink:NamedThing protein targeting to chloroplast The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. tmpzr1t_l9r_go_relaxed.owl protein-chloroplast targeting biological_process owl:Class GO:1902252 biolink:NamedThing positive regulation of erythrocyte apoptotic process Any process that activates or increases the frequency, rate or extent of erythrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of red blood cell apoptosis|upregulation of red blood cell apoptosis|up regulation of erythrocyte apoptosis|up-regulation of RBC apoptosis|up regulation of RBC apoptotic process|activation of erythrocyte apoptotic process|upregulation of erythrocyte apoptosis|positive regulation of RBC apoptotic process|positive regulation of erythrocyte apoptosis|up regulation of red blood cell apoptosis|up-regulation of red blood cell apoptosis|activation of RBC apoptosis|up regulation of RBC apoptosis|up regulation of red blood cell apoptotic process|up-regulation of erythrocyte apoptotic process|activation of RBC apoptotic process|positive regulation of red blood cell apoptotic process|positive regulation of RBC apoptosis|upregulation of RBC apoptotic process|upregulation of erythrocyte apoptotic process|activation of red blood cell apoptotic process|up-regulation of erythrocyte apoptosis|activation of erythrocyte apoptosis|up regulation of erythrocyte apoptotic process|upregulation of red blood cell apoptotic process|up-regulation of red blood cell apoptotic process|upregulation of RBC apoptosis|activation of red blood cell apoptosis|up-regulation of RBC apoptotic process rl 2013-06-20T19:31:04Z biological_process owl:Class GO:0070921 biolink:NamedThing regulation of production of siRNA involved in gene silencing by small RNA Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of gene silencing by small RNA. tmpzr1t_l9r_go_relaxed.owl regulation of production of siRNA involved in chromatin silencing by small RNA|regulation of chromatin silencing by small RNA, production of siRNA https://github.com/geneontology/go-ontology/issues/22058 mah 2009-09-11T03:42:51Z biological_process owl:Class GO:0047995 biolink:NamedThing hydroxyphenylpyruvate reductase activity Catalysis of the reaction: 3-(4-hydroxyphenyl)lactate + NAD+ = 3-(4-hydroxyphenyl)pyruvate + NADH. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenyllactate:NAD+ oxidoreductase activity|HPRP MetaCyc:HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN|RHEA:10780|EC:1.1.1.237 molecular_function owl:Class GO:0010368 biolink:NamedThing chloroplast isoamylase complex A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in plants are intracellular and probably chloroplast localized. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043033 biolink:NamedThing isoamylase complex A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram-negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. tmpzr1t_l9r_go_relaxed.owl debranching enzyme complex cellular_component owl:Class GO:0090630 biolink:NamedThing activation of GTPase activity Any process that initiates the activity of an inactive GTPase through the replacement of GDP by GTP. tmpzr1t_l9r_go_relaxed.owl activation of Ran GTPase activity|Rap GTPase activation|Ran GTPase activation|activation of ARF GTPase activity|Cdc42 GTPase activation|Ras GTPase activation|activation of Ras GTPase activity|activation of Rap GTPase activity|Rho GTPase activation|Ral GTPase activation|activation of Ral GTPase activity|activation of Rac GTPase activity|activation of Rab GTPase activity|activation of Rho GTPase activity|Rac GTPase activation|activation of Cdc42 GTPase activity|ARF GTPase activation|Rab GTPase activation tb 2015-02-11T16:09:19Z GO:0032857|GO:0032858|GO:0032864|GO:0032863|GO:0032860|GO:0032859|GO:0032861|GO:0032856|GO:0032862 biological_process owl:Class GO:0031943 biolink:NamedThing regulation of glucocorticoid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids. tmpzr1t_l9r_go_relaxed.owl regulation of glucocorticoid metabolism biological_process owl:Class GO:0047066 biolink:NamedThing phospholipid-hydroperoxide glutathione peroxidase activity Catalysis of the reaction: a lipid hydroperoxide + 2 reduced glutathione = 2 H2O + lipid + 2 oxidized glutathione. tmpzr1t_l9r_go_relaxed.owl glutathione:lipid-hydroperoxide oxidoreductase activity|peroxidation-inhibiting protein activity|peroxidation-inhibiting protein: peroxidase, glutathione (phospholipid hydroperoxide-reducing)|hydroperoxide glutathione peroxidase activity|PHGPX|phospholipid hydroperoxide glutathione peroxidase activity Reactome:R-HSA-9020273|Reactome:R-HSA-9018895|Reactome:R-HSA-9018868|MetaCyc:1.11.1.12-RXN|EC:1.11.1.12|RHEA:19057|Reactome:R-HSA-9020271 molecular_function owl:Class GO:0048079 biolink:NamedThing regulation of cuticle pigmentation Any process that modulates the frequency, rate or extent of establishment of a pattern of pigment in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990968 biolink:NamedThing modulation by host of RNA binding by virus A process in which a host organism modulates the frequency, rate or extent of a viral gene product binding to RNA. tmpzr1t_l9r_go_relaxed.owl modulation by host of viral protein:RNA interaction Note that the bound RNA may originate from the virus or another organism, including the host. bf 2016-06-21T11:56:10Z biological_process owl:Class GO:0034928 biolink:NamedThing 1-hydroxypyrene 6,7-monooxygenase activity Catalysis of the reaction: 1-hydroxypyrene + O2 + 2 H+ + 2 e- = 1-hydroxypyrene-6,7-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0946 molecular_function owl:Class GO:0070370 biolink:NamedThing cellular heat acclimation Any process that increases heat tolerance of a cell in response to high temperatures. tmpzr1t_l9r_go_relaxed.owl cellular thermotolerance biological_process owl:Class GO:0010286 biolink:NamedThing heat acclimation Any process that increases heat tolerance of an organism in response to high temperatures. tmpzr1t_l9r_go_relaxed.owl thermotolerance biological_process owl:Class GO:0102738 biolink:NamedThing (gibberellin-14), 2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A14 + O2 + 2-oxoglutarate <=> gibberellin A37 + carbon dioxide + succinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7589 molecular_function owl:Class GO:0050066 biolink:NamedThing lysine 2,3-aminomutase activity Catalysis of the reaction: L-lysine = (3S)-3,6-diaminohexanoate. tmpzr1t_l9r_go_relaxed.owl L-lysine 2,3-aminomutase activity RHEA:19177|MetaCyc:LYSINE-23-AMINOMUTASE-RXN|EC:5.4.3.2|KEGG_REACTION:R00461 molecular_function owl:Class GO:0099162 biolink:NamedThing regulation of neurotransmitter loading into synaptic vesicle Any process that modulates the frequency, rate or extent of neurotransmitter loading into synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl regulation of neurotransmitter uptake into synaptic vesicle|regulation of synaptic vesicle neurotransmitter loading dos 2017-09-10T11:07:57Z biological_process owl:Class GO:1902883 biolink:NamedThing negative regulation of response to oxidative stress Any process that stops, prevents or reduces the frequency, rate or extent of response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to oxidative stress|inhibition of response to oxidative stress|downregulation of response to oxidative stress|down regulation of response to oxidative stress kmv 2014-04-03T20:30:20Z biological_process owl:Class GO:0015565 biolink:NamedThing threonine efflux transmembrane transporter activity Enables the transfer of threonine from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl threonine export transporter activity|threonine efflux permease activity|threonine export protein molecular_function owl:Class GO:0034639 biolink:NamedThing L-amino acid efflux transmembrane transporter activity Enables the transfer of an L-amino acid from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl L-amino acid export transporter activity|L-amino acid efflux permease activity molecular_function owl:Class GO:0051423 biolink:NamedThing positive regulation of endo-1,4-beta-xylanase activity Any process that activates or increases the frequency, rate or extent of endo-(1->4)-beta-xylanase activity, the catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans. tmpzr1t_l9r_go_relaxed.owl up-regulation of endo-1,4-beta-xylanase activity|activation of endo-1,4-beta-xylanase activity|endo-1,4-beta-xylanase activator|up regulation of endo-1,4-beta-xylanase activity|upregulation of endo-1,4-beta-xylanase activity|stimulation of endo-1,4-beta-xylanase activity|xylanase activator biological_process owl:Class GO:0075296 biolink:NamedThing positive regulation of ascospore formation Any process that activates, maintains or increases the frequency, rate or extent of ascospore formation, a process in which a sexual spore, named ascospore, from Ascomycete fungi was produced inside an ascus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046587 biolink:NamedThing positive regulation of calcium-dependent cell-cell adhesion Any process that activates or increases the frequency, rate or extent of calcium-dependent cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl stimulation of calcium-dependent cell-cell adhesion|upregulation of calcium-dependent cell-cell adhesion|activation of calcium-dependent cell-cell adhesion|up regulation of calcium-dependent cell-cell adhesion|up-regulation of calcium-dependent cell-cell adhesion biological_process owl:Class GO:0044566 biolink:NamedThing chondrocyte activation A change in the morphology or behavior of a chondrocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-05T04:45:38Z biological_process owl:Class GO:0071444 biolink:NamedThing cellular response to pheromone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus. tmpzr1t_l9r_go_relaxed.owl cellular pheromone response mah 2009-12-16T04:05:33Z biological_process owl:Class GO:0060453 biolink:NamedThing regulation of gastric acid secretion Any process that modulates the rate frequency or extent of gastric secretion. Gastric secretion is the regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046573 biolink:NamedThing lactonohydrolase activity Catalysis of the hydrolysis of lactone rings (intramolecular cyclic esters) to produce a hydroxyl group and a carboxyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905848 biolink:NamedThing positive regulation of cellular response to oxidopamine Any process that activates or increases the frequency, rate or extent of cellular response to oxidopamine. tmpzr1t_l9r_go_relaxed.owl upregulation of cellular response to oxidopamine|activation of cellular response to oxidopamine|up regulation of cellular response to oxidopamine|up-regulation of cellular response to oxidopamine rz 2017-01-19T10:47:04Z biological_process owl:Class GO:0046059 biolink:NamedThing dAMP catabolic process The chemical reactions and pathways resulting in the breakdown of dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dAMP breakdown|dAMP catabolism|dAMP degradation biological_process owl:Class GO:0075521 biolink:NamedThing microtubule-dependent intracellular transport of viral material towards nucleus The directed movement of a virus, or part of a virus, towards the host cell nucleus using host microtubules. tmpzr1t_l9r_go_relaxed.owl microtubule-dependent intracellular transport of viral material to nucleus VZ:983 jl 2011-08-03T02:09:21Z biological_process owl:Class GO:0075606 biolink:NamedThing transport of viral material towards nucleus The directed movement of a virus, or part of a virus, towards the host cell nucleus. The process begins after viral entry, and ends when the viral material is at the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl cytoplasmic inwards viral transport|viral genome transport to host cell nucleus|transport of viral material to nucleus VZ:990 This process does not include the viral material crossing the nuclear membrane. For transport of viral material into the nucleus, consider instead: 'viral penetration into host nucleus ; GO:0075732'. jl 2009-11-05T03:33:36Z biological_process owl:Class GO:0033807 biolink:NamedThing icosanoyl-CoA synthase activity Catalysis of the reaction: stearoyl-CoA + malonyl-CoA + 2 NAD(P)H + 2 H+ = icosanoyl-CoA + CO2 + 2 NAD(P)+. tmpzr1t_l9r_go_relaxed.owl C18-CoA elongase activity|stearoyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing) activity|stearoyl-CoA elongase activity|acyl-CoA elongase activity MetaCyc:ICOSANOYL-COA-SYNTHASE-RXN|EC:2.3.1.119 molecular_function owl:Class GO:0015649 biolink:NamedThing 2-keto-3-deoxygluconate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 2-keto-3-deoxygluconate(out) + H+(out) = 2-keto-3-deoxygluconate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxygluconate:hydrogen symporter activity molecular_function owl:Class GO:0015355 biolink:NamedThing secondary active monocarboxylate transmembrane transporter activity Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl monocarboxylate porter activity molecular_function owl:Class GO:0072581 biolink:NamedThing protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine The modification of an N6-(lysyl)-L-lysine residue in a protein, producing protein-N6-(beta-lysyl)-L-lysine ((2S)-2-amino-6-([(2S)-2,6-diaminohexanoyl]amino)hexanoic acid). This modification is observed in, and is probably unique to, translation elongation factor P (EF-P). tmpzr1t_l9r_go_relaxed.owl mah 2011-02-07T11:51:02Z biological_process owl:Class GO:0065004 biolink:NamedThing protein-DNA complex assembly The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex. tmpzr1t_l9r_go_relaxed.owl DNA-protein complex assembly biological_process owl:Class GO:0046140 biolink:NamedThing corrin biosynthetic process The chemical reactions and pathways resulting in the formation of corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule. tmpzr1t_l9r_go_relaxed.owl corrin biosynthesis|corrin anabolism|corrin synthesis|corrin formation biological_process owl:Class GO:0061087 biolink:NamedThing positive regulation of histone H3-K27 methylation Any process that increases the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:23:52Z biological_process owl:Class GO:0071192 biolink:NamedThing Kv4.2-KChIP1 channel complex A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.2. tmpzr1t_l9r_go_relaxed.owl CORUM:606 mah 2009-11-23T04:51:42Z cellular_component owl:Class GO:0044727 biolink:NamedThing DNA demethylation of male pronucleus The active DNA demethylation of the paternal genome that takes place before the first cell division. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-24T14:25:35Z biological_process owl:Class GO:0052677 biolink:NamedThing D-arabinitol dehydrogenase, D-xylulose forming (NADP+) activity Catalysis of the reaction: D-arabinitol + NADP+ = D-xylulose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADP+-dependent D-arabinitol dehydrogenase activity|D-arabinitol:NADP+ dehydrogenase activity|D-arabinitol dehydrogenase 1 activity|ARD1p KEGG_REACTION:R07143|MetaCyc:RXN-7971|RHEA:21276 ai 2011-04-12T02:33:43Z molecular_function owl:Class GO:1903235 biolink:NamedThing positive regulation of calcium ion-dependent exocytosis of neurotransmitter Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis of neurotransmitter. tmpzr1t_l9r_go_relaxed.owl activation of calcium ion-dependent exocytosis of neurotransmitter|up-regulation of calcium ion-dependent exocytosis of neurotransmitter|upregulation of calcium ion-dependent exocytosis of neurotransmitter|up regulation of calcium ion-dependent exocytosis of neurotransmitter An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 (IMP) pad 2014-07-31T11:54:46Z biological_process owl:Class GO:0106017 biolink:NamedThing phosphatidylinositol-3,4-bisphosphate phosphatase activity Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-10T14:08:06Z molecular_function owl:Class GO:1990267 biolink:NamedThing response to transition metal nanoparticle Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transition metal nanoparticle. tmpzr1t_l9r_go_relaxed.owl response to neutral metal atoms|response to colloidal metal sl 2014-01-10T17:16:41Z biological_process owl:Class GO:0015175 biolink:NamedThing neutral amino acid transmembrane transporter activity Enables the transfer of neutral amino acids from one side of a membrane to the other. Neutral amino acids have side chains with no charge at pH 7.3. tmpzr1t_l9r_go_relaxed.owl neutral amino acid transporter activity molecular_function owl:Class GO:0015314 biolink:NamedThing aminotriazole:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + aminotriazole(in) = H+(in) + aminotriazole(out). tmpzr1t_l9r_go_relaxed.owl aminotriazole:hydrogen antiporter activity molecular_function owl:Class GO:1901478 biolink:NamedThing aminotriazole transmembrane transporter activity Enables the transfer of amitrole from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl aminotriazole transporter activity tb 2012-10-04T23:21:06Z GO:0015241 molecular_function owl:Class GO:0046316 biolink:NamedThing gluconokinase activity Catalysis of the reaction: D-gluconate + ATP = 6-phospho-D-gluconate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:D-gluconate 6-phosphotransferase activity|gluconokinase (phosphorylating)|gluconate kinase activity EC:2.7.1.12|KEGG_REACTION:R01737|RHEA:19433|MetaCyc:GLUCONOKIN-RXN molecular_function owl:Class GO:1904562 biolink:NamedThing phosphatidylinositol 5-phosphate metabolic process The chemical reactions and pathways involving phosphatidylinositol 5-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 5-phosphate metabolism dph 2015-08-18T16:21:44Z biological_process owl:Class GO:0046141 biolink:NamedThing corrin catabolic process The chemical reactions and pathways resulting in the breakdown of corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule. tmpzr1t_l9r_go_relaxed.owl corrin degradation|corrin breakdown|corrin catabolism biological_process owl:Class GO:0031435 biolink:NamedThing mitogen-activated protein kinase kinase kinase binding Binding to a mitogen-activated protein kinase kinase kinase, a protein that can phosphorylate a MAP kinase kinase. tmpzr1t_l9r_go_relaxed.owl MAPKKK binding molecular_function owl:Class GO:1901038 biolink:NamedThing cyanidin 3-O-glucoside metabolic process The chemical reactions and pathways involving cyanidin 3-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl cyanidin 3-O-beta-D-glucoside metabolic process|cyanidin 3-O-beta-D-glucoside metabolism tb 2012-06-22T12:16:26Z biological_process owl:Class GO:0010489 biolink:NamedThing UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity Catalysis of the reaction: UDP-4-keto-6-deoxyglucose = UDP-4-keto-rhamnose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047077 biolink:NamedThing Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity Catalysis of the reaction: O2 + ATP + Photinus luciferin = light + diphosphate + AMP + CO2 + oxidized Photinus luciferin. tmpzr1t_l9r_go_relaxed.owl Photinus-luciferin 4-monooxygenase (ATP-hydrolysing)|firefly luciferin luciferase activity|Photinus pyralis luciferase activity|Photinus-luciferin:oxygen 4-oxidoreductase (decarboxylating, ATP-hydrolysing)|luciferase (firefly luciferin)|luciferase activity|Photinus luciferin 4-monooxygenase (adenosine triphosphate-hydrolyzing)|firefly luciferase activity EC:1.13.12.7|MetaCyc:1.13.12.7-RXN|RHEA:10732 molecular_function owl:Class GO:0046760 biolink:NamedThing viral budding from Golgi membrane A viral budding that starts with formation of a membrane curvature in the host Golgi membrane. tmpzr1t_l9r_go_relaxed.owl viral budding from Golgi membrane by viral capsid envelopment|Golgi membrane viral budding during viral capsid envelopment|virus budding from Golgi membrane|viral budding from Golgi membrane during viral capsid envelopment|virus budding from Golgi membrane during viral capsid envelopment|Golgi membrane viral budding|virus budding from Golgi membrane by viral capsid envelopment GO:0046750|GO:0046763 biological_process owl:Class GO:0046605 biolink:NamedThing regulation of centrosome cycle Any process that modulates the frequency, rate or extent of the centrosome cycle, the processes of centrosome duplication and separation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035814 biolink:NamedThing negative regulation of renal sodium excretion Any process that decreases the amount of sodium excreted in urine over a unit of time. tmpzr1t_l9r_go_relaxed.owl The amount of sodium excreted in urine over a unit of time can be decreased by decreasing the volume of urine produced (antidiuresis) and/or by decreasing the concentration of sodium in the urine. bf 2011-04-20T01:27:39Z biological_process owl:Class GO:1904666 biolink:NamedThing regulation of ubiquitin protein ligase activity Any process that modulates the frequency, rate or extent of ubiquitin protein ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of protein ubiquitination activity|regulation of E3|regulation of APC-fizzy related complex activity|regulation of ubiquitin ligase activity dph 2015-09-08T15:26:59Z GO:1903834 biological_process owl:Class GO:0051438 biolink:NamedThing regulation of ubiquitin-protein transferase activity Any process that modulates the frequency, rate or extent of ubiquitin transferase activity. tmpzr1t_l9r_go_relaxed.owl anaphase-promoting complex regulator|SCF complex regulator|ubiquitin-protein transferase regulator|regulation of ubiquitin transferase activity|APC regulator|ubiquitin transferase regulator biological_process owl:Class GO:0018191 biolink:NamedThing peptidyl-serine octanoylation The octanoylation of peptidyl-serine to form peptidyl-O3-octanoyl-L-serine, typical of the protein ghrelin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0290 biological_process owl:Class GO:0050544 biolink:NamedThing arachidonic acid binding Binding to arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer. tmpzr1t_l9r_go_relaxed.owl arachidonate binding molecular_function owl:Class GO:0050543 biolink:NamedThing icosatetraenoic acid binding Binding to icosatetraenoic acid, any straight-chain fatty acid with twenty carbon atoms and four double bonds per molecule. tmpzr1t_l9r_go_relaxed.owl eicosatetraenoic acid binding molecular_function owl:Class GO:0005601 biolink:NamedThing classical-complement-pathway C3/C5 convertase complex A heterodimeric protein complex that catalyzes the cleavage of complement components C3 and C5, and acts in the classical pathway of complement activation; consists of one monomer of C2a and one monomer of C4b; C2a is the catalytic subunit, but cannot catalyze cleavage alone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902386 biolink:NamedThing glycyrrhetinate biosynthetic process The chemical reactions and pathways resulting in the formation of glycyrrhetinate. tmpzr1t_l9r_go_relaxed.owl glycyrrhetinate anabolism|glycyrrhetinate synthesis|glycyrrhetinate biosynthesis|glycyrrhetinate formation ms 2013-09-03T12:56:19Z biological_process owl:Class GO:0018195 biolink:NamedThing peptidyl-arginine modification The modification of peptidyl-arginine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034310 biolink:NamedThing primary alcohol catabolic process The chemical reactions and pathways resulting in the breakdown of primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it. tmpzr1t_l9r_go_relaxed.owl primary alcohol breakdown|monohydric alcohol catabolic process|primary alcohol catabolism|primary alcohol degradation biological_process owl:Class GO:0070198 biolink:NamedThing protein localization to chromosome, telomeric region Any process in which a protein is transported to, or maintained at, the telomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl protein localization to telomere|protein localisation to chromosome, telomeric region biological_process owl:Class GO:0034502 biolink:NamedThing protein localization to chromosome Any process in which a protein is transported to, or maintained at, a specific location on a chromosome. tmpzr1t_l9r_go_relaxed.owl condensin localization to chromosome|protein localisation to chromosome biological_process owl:Class GO:0099160 biolink:NamedThing postsynaptic intermediate filament cytoskeleton The intermediate filament cytoskeleton that is part of a postsynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-08-28T15:26:08Z cellular_component owl:Class GO:0009678 biolink:NamedThing pyrophosphate hydrolysis-driven proton transmembrane transporter activity Enables the transmembrane transport of one proton (H+), driven by the hydrolysis of pyrophosphate, and generating a proton motive force. tmpzr1t_l9r_go_relaxed.owl proton-pumping pyrophosphatase|diphosphate hydrolysis-driven proton transmembrane transporter activity|proton-pumping diphosphatase|PP(i) hydrolysis-driven proton transmembrane transporter activity|hydrogen-translocating pyrophosphatase activity|proton-translocating pyrophosphatase activity|H(+)-exporting diphosphatase RHEA:13973|EC:7.1.3.1|TC:3.A.10|MetaCyc:TRANS-RXN-370 molecular_function owl:Class GO:0047342 biolink:NamedThing galactose-1-phosphate thymidylyltransferase activity Catalysis of the reaction: alpha-D-galactose 1-phosphate + dTTP = diphosphate + dTDP-D-galactose. tmpzr1t_l9r_go_relaxed.owl dTDP galactose pyrophosphorylase activity|dTDP-galactose diphosphorylase activity|thymidine diphosphogalactose pyrophosphorylase activity|dTDP-galactose pyrophosphorylase activity|dTTP:alpha-D-galactose-1-phosphate thymidylyltransferase activity|thymidine triphosphate:alpha-D-galactose 1-phosphate thymidylyltransferase activity|galactose 1-phosphate thymidylyl transferase activity MetaCyc:2.7.7.32-RXN|EC:2.7.7.32|RHEA:17165|KEGG_REACTION:R02329 molecular_function owl:Class GO:0140320 biolink:NamedThing PAMP receptor decoy activity A gene product which recognizes, binds and sequesters PAMP ligands in order to prevent them from binding and activating to the host PAMP receptor. Usually this activity is encoded by a symbiont or a pathogen to prevent activation of the host innate immune response. tmpzr1t_l9r_go_relaxed.owl pathogen-associated molecular pattern receptor decoy activity|pattern recognition receptor decoy activity pg 2019-04-02T11:07:13Z molecular_function owl:Class GO:0050339 biolink:NamedThing thymidine-triphosphatase activity Catalysis of the reaction: dTTP + H2O = dTDP + phosphate. tmpzr1t_l9r_go_relaxed.owl thymidine triphosphate nucleotidohydrolase activity|deoxythymidine-5'-triphosphatase activity|dTTP nucleotidohydrolase activity|dTTPase activity RHEA:19013|EC:3.6.1.39|MetaCyc:THYMIDINE-TRIPHOSPHATASE-RXN molecular_function owl:Class GO:0017111 biolink:NamedThing nucleoside-triphosphatase activity Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl nucleoside triphosphate hydrolase activity|NTPase activity|unspecific diphosphate phosphohydrolase activity|nucleoside 5-triphosphatase activity|nucleoside triphosphate phosphohydrolase activity|apyrase activity|nucleoside triphosphatase activity|nucleoside-5-triphosphate phosphohydrolase activity Reactome:R-HSA-8851110|MetaCyc:NUCLEOSIDE-TRIPHOSPHATASE-RXN|Reactome:R-HSA-8851089|RHEA:23680|Reactome:R-HSA-8851494|Reactome:R-HSA-8850846|Reactome:R-HSA-8851234|Reactome:R-HSA-8851538 molecular_function owl:Class GO:0060740 biolink:NamedThing prostate gland epithelium morphogenesis The process in which the anatomical structures of epithelia of the prostate gland are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-16T09:23:22Z biological_process owl:Class GO:0034950 biolink:NamedThing phenylboronic acid monooxygenase activity Catalysis of the reaction: phenylboronic acid + O2 + 2 H+ + 2 e- = phenol + B(OH)3. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1020 molecular_function owl:Class GO:0097311 biolink:NamedThing bacterial biofilm matrix A structure lying external to bacterial cells. A biofilm is an aggregate of surface-associated bacteria, and the biofilm matrix is the envelope of polymeric substances that surrounds the bacteria. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-24T11:20:50Z cellular_component owl:Class GO:0062039 biolink:NamedThing biofilm matrix A structure lying external to microbial cells. A biofilm is an aggregate of surface-associated cells, and the biofilm matrix is the envelope of polymeric substances that surrounds the cells. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-04T12:49:17Z cellular_component owl:Class GO:1903846 biolink:NamedThing positive regulation of cellular response to transforming growth factor beta stimulus Any process that activates or increases the frequency, rate or extent of cellular response to transforming growth factor beta stimulus. tmpzr1t_l9r_go_relaxed.owl upregulation of cellular response to transforming growth factor beta stimulus|activation of cellular response to TGF-beta stimulus|up-regulation of cellular response to transforming growth factor beta stimulus|activation of cellular response to TGFbeta stimulus|up regulation of cellular response to transforming growth factor beta stimulus|activation of cellular response to transforming growth factor beta stimulus|up regulation of cellular response to TGF-beta stimulus|upregulation of cellular response to TGF-beta stimulus|up regulation of cellular response to TGFbeta stimulus|positive regulation of cellular response to TGF-beta stimulus|positive regulation of cellular response to TGFbeta stimulus|up-regulation of cellular response to TGF-beta stimulus|upregulation of cellular response to TGFbeta stimulus|up-regulation of cellular response to TGFbeta stimulus rph 2015-01-23T11:25:30Z biological_process owl:Class GO:0002550 biolink:NamedThing positive regulation of plasma kallikrein-kinin cascade Any process that activates or increases the frequency, rate, or extent of the plasma kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl up regulation of plasma kallikrein-kinin cascade|stimulation of plasma kallikrein-kinin cascade|up-regulation of plasma kallikrein-kinin cascade|activation of plasma kallikrein-kinin cascade|upregulation of plasma kallikrein-kinin cascade biological_process owl:Class GO:1905708 biolink:NamedThing regulation of cell morphogenesis involved in conjugation with cellular fusion Any process that modulates the location, frequency, rate or extent of cell morphogenesis involved in conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl regulation of shmoo orientation|regulation of shmooing mah 2016-11-18T11:33:54Z biological_process owl:Class GO:0042652 biolink:NamedThing mitochondrial respiratory chain complex I, peripheral segment The peripheral segment of respiratory chain complex I located in the mitochondrion. Respiratory chain complex I is an enzyme of the respiratory chain, consisting of at least 34 polypeptide chains. The electrons of NADH enter the chain at this complex. The complete complex is L-shaped, with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. tmpzr1t_l9r_go_relaxed.owl NADH dehydrogenase (ubiquinone) complex, peripheral segment|NADH-Q oxidoreductase complex, peripheral segment cellular_component owl:Class GO:0061851 biolink:NamedThing leading edge of lamellipodium That part of the lamellipodium which represents the distal part of the structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903024 biolink:NamedThing positive regulation of ascospore-type prospore membrane formation Any process that activates or increases the frequency, rate or extent of formation of an ascospore-type prospore membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of ascospore-type prospore membrane assembly|up regulation of FSM biosynthesis|up-regulation of FSM formation|positive regulation of forespore membrane biosynthesis|activation of ascospore-type prospore membrane assembly|positive regulation of FSM assembly|activation of FSM formation|up regulation of ascospore-type prospore membrane assembly|activation of forespore membrane biosynthesis|upregulation of FSM biosynthesis|positive regulation of FSM biosynthesis|up-regulation of FSM assembly|upregulation of ascospore-type prospore membrane assembly|activation of forespore membrane formation|upregulation of forespore membrane formation|up-regulation of FSM biosynthesis|up-regulation of forespore membrane biosynthesis|upregulation of forespore membrane biosynthesis|up regulation of FSM assembly|positive regulation of forespore membrane formation|activation of FSM assembly|activation of FSM biosynthesis|up regulation of forespore membrane formation|up regulation of forespore membrane biosynthesis|upregulation of FSM formation|positive regulation of ascospore-type prospore membrane assembly|up-regulation of forespore membrane formation|positive regulation of FSM formation|upregulation of FSM assembly|up regulation of FSM formation al 2014-05-15T08:51:58Z biological_process owl:Class GO:0019370 biolink:NamedThing leukotriene biosynthetic process The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid. tmpzr1t_l9r_go_relaxed.owl leukotriene synthesis|leukotriene biosynthesis|leukotriene anabolism|leukotriene formation Wikipedia:Leukotriene#Leukotriene_synthesis biological_process owl:Class GO:0046518 biolink:NamedThing octamethylcyclotetrasiloxane metabolic process The chemical reactions and pathways involving octamethylcyclotetrasiloxane, a cyclic silicone-oxygen ring compound with two methyl groups attached to each silicone atom. tmpzr1t_l9r_go_relaxed.owl octamethylcyclotetrasiloxane metabolism biological_process owl:Class GO:0034061 biolink:NamedThing DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and a 3'hydroxyl group. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleate nucleotidyltransferase activity|deoxyribonucleic acid polymerase activity|DNA nucleotidyltransferase activity|deoxyribonucleic polymerase activity|deoxynucleate polymerase activity molecular_function owl:Class GO:0072762 biolink:NamedThing cellular response to carbendazim Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbendazim stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:48:11Z biological_process owl:Class GO:1900733 biolink:NamedThing negative regulation of polyketide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of polyketide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of polyketide biosynthetic process|down-regulation of polyketide anabolism|down-regulation of polyketide formation|inhibition of polyketide biosynthesis|negative regulation of polyketide formation|down-regulation of polyketide biosynthesis|negative regulation of polyketide biosynthesis|down-regulation of polyketide synthesis|downregulation of polyketide anabolism|inhibition of polyketide anabolism|down regulation of polyketide biosynthesis|negative regulation of polyketide anabolism|downregulation of polyketide formation|downregulation of polyketide biosynthetic process|inhibition of polyketide formation|downregulation of polyketide biosynthesis|negative regulation of polyketide synthesis|down regulation of polyketide anabolism|down regulation of polyketide formation|downregulation of polyketide synthesis|down regulation of polyketide biosynthetic process|down regulation of polyketide synthesis|inhibition of polyketide synthesis|inhibition of polyketide biosynthetic process di 2012-05-26T01:30:02Z biological_process owl:Class GO:1903606 biolink:NamedThing cytochrome c metabolic process The chemical reactions and pathways involving cytochrome c. tmpzr1t_l9r_go_relaxed.owl cytochrome c metabolism dph 2014-11-13T20:01:27Z biological_process owl:Class GO:1904557 biolink:NamedThing L-alanine transmembrane transport The directed movement of L-alanine across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2015-08-14T14:21:29Z biological_process owl:Class GO:0051736 biolink:NamedThing polyribonucleotide 5'-hydroxyl-kinase activity Catalysis of the reaction: ATP + 5'-dephospho-RNA = ADP + 5'-phospho-RNA. tmpzr1t_l9r_go_relaxed.owl ATP-dependent RNA 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent RNA kinase activity|ATP:5'-dephosphopolyribonucleotide 5'-phosphotransferase activity|ATP-dependent polynucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide kinase activity molecular_function owl:Class GO:1900583 biolink:NamedThing o-orsellinic acid catabolic process The chemical reactions and pathways resulting in the breakdown of o-orsellinic acid. tmpzr1t_l9r_go_relaxed.owl o-orsellinic acid catabolism|o-orsellinic acid breakdown|o-orsellinic acid degradation di 2012-05-15T06:48:04Z biological_process owl:Class GO:0070669 biolink:NamedThing response to interleukin-2 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-2 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-2 mah 2009-05-29T09:59:43Z biological_process owl:Class GO:1904961 biolink:NamedThing quiescent center organization The process that contributes to the act of creating the structural organization of the quiescent center. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl quiescent center structural organization tb 2016-02-10T00:11:00Z biological_process owl:Class GO:0021609 biolink:NamedThing accessory nerve structural organization The process that contributes to the act of creating the structural organization of the accessory nerve This process pertains to the physical shaping of a rudimentary structure. The spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve. tmpzr1t_l9r_go_relaxed.owl CN XI structural organization|accessory nerve structural organisation biological_process owl:Class GO:1900986 biolink:NamedThing ajmaline metabolic process The chemical reactions and pathways involving ajmaline. tmpzr1t_l9r_go_relaxed.owl ajmaline metabolism yaf 2012-06-14T09:47:02Z biological_process owl:Class GO:1901207 biolink:NamedThing regulation of heart looping Any process that modulates the frequency, rate or extent of heart looping. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac looping rl 2012-07-31T07:15:47Z biological_process owl:Class GO:0090176 biolink:NamedThing microtubule cytoskeleton organization involved in establishment of planar polarity A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins and contributes to the establishment of planar polarity. tmpzr1t_l9r_go_relaxed.owl microtubule cytoskeleton organisation involved in establishment of planar polarity tb 2009-12-14T10:34:25Z biological_process owl:Class GO:0051623 biolink:NamedThing positive regulation of norepinephrine uptake Any process that activates or increases the frequency, rate or extent of the directed movement of norepinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl activation of norepinephrine uptake|stimulation of norepinephrine uptake|up-regulation of norepinephrine uptake|upregulation of norepinephrine uptake|positive regulation of noradrenaline uptake|positive regulation of levarterenol uptake|up regulation of norepinephrine uptake|positive regulation of norepinephrine import biological_process owl:Class GO:0120304 biolink:NamedThing integument-mediated background adaptation Any process in which an organism changes its pigmentation (lightening in response to a brighter environment or darkening in response to a dimmer environment) in response to a change in light intensity detected by light sensitive cells in the integument. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20524 krc 2021-02-09T18:41:07Z biological_process owl:Class GO:0010429 biolink:NamedThing methyl-CpNpN binding Binding to a methylated cytosine/unspecified/unspecified trinucleotide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019243 biolink:NamedThing methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step. tmpzr1t_l9r_go_relaxed.owl D-lactate biosynthesis from methylglyoxal|methylglyoxal detoxification|methylglyoxal breakdown to D-lactate|glyoxalase system|methylglyoxal degradation to D-lactate|methylglyoxal catabolism to D-lactate via S-lactoyl-glutathione|D-lactate biosynthetic process from methylglyoxal MetaCyc:PWY-5386 biological_process owl:Class GO:0007329 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by pheromones Any process involving pheromones that activates or increases the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl stimulation of transcription from RNA polymerase II promoter by pheromones|up regulation of transcription from RNA polymerase II promoter by pheromones|up-regulation of transcription from RNA polymerase II promoter by pheromones|positive regulation of transcription from Pol II promoter by pheromones|upregulation of transcription from RNA polymerase II promoter by pheromones|activation of transcription from RNA polymerase II promoter by pheromones biological_process owl:Class GO:0009371 biolink:NamedThing positive regulation of transcription by pheromones Any process involving pheromones that activates or increases the rate of transcription. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription by pheromones|up regulation of transcription by pheromones|stimulation of transcription by pheromones|upregulation of transcription by pheromones|activation of transcription by pheromones biological_process owl:Class GO:0034216 biolink:NamedThing high-affinity thiamine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamine(out) + H+(out) = thiamine(in) + H+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity thiamin:proton symporter activity|high affinity thiamin:hydrogen symporter activity|high-affinity thiamine:hydrogen symporter activity|high-affinity thiamin:hydrogen symporter activity molecular_function owl:Class GO:0031339 biolink:NamedThing negative regulation of vesicle fusion Any process that stops, prevents, or reduces the frequency, rate or extent of vesicle fusion. tmpzr1t_l9r_go_relaxed.owl down-regulation of vesicle fusion|inhibition of vesicle fusion|downregulation of vesicle fusion|down regulation of vesicle fusion biological_process owl:Class GO:0120202 biolink:NamedThing rod photoreceptor disc membrane Stack of disc membranes located inside a rod photoreceptor outer segment, and containing densely packed molecules of rhodopsin photoreceptor proteins that traverse the lipid bilayer. It is thought that rod disc membranes arise as evaginations of the ciliary membrane near the base of the outer segment, which then become completely separated from the ciliary membrane, during the development of the rod outer segment. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-07T23:27:06Z cellular_component owl:Class GO:0046525 biolink:NamedThing xylosylprotein 4-beta-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + O-beta-D-xylosylprotein = UDP + 4-beta-D-galactosyl-O-beta-D-xylosylprotein. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:xylose galactosyltransferase activity|UDPgalactose:O-beta-D-xylosylprotein 4-beta-D-galactosyltransferase activity|UDP-D-galactose:xylose galactosyltransferase activity|UDP-D-galactose:D-xylose galactosyltransferase activity|UDP-galactose:O-beta-D-xylosylprotein 4-beta-D-galactosyltransferase activity|galactosyltransferase I activity|uridine diphosphogalactose-xylose galactosyltransferase activity EC:2.4.1.133|Reactome:R-HSA-3560804|MetaCyc:2.4.1.133-RXN|Reactome:R-HSA-1889981|RHEA:15297 molecular_function owl:Class GO:0070439 biolink:NamedThing Mad-Max-mSin3A complex A transcriptional repressor complex that contains a heterodimer of the bHLH-ZIP proteins Mad and Max, plus mSin3A, a homolog of the yeast Sin3p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030432 biolink:NamedThing peristalsis A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Peristalsis biological_process owl:Class GO:0031050 biolink:NamedThing dsRNA processing Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function. tmpzr1t_l9r_go_relaxed.owl dsRNA fragmentation|double-stranded RNA fragmentation biological_process owl:Class GO:0002150 biolink:NamedThing hypochlorous acid catabolic process The chemical reactions and pathways resulting in the breakdown of hypochlorous acid. tmpzr1t_l9r_go_relaxed.owl hypochlorous acid catabolism|HClO catabolic process|hypochlorite catabolic process|HOCl catabolic process hjd 2009-10-13T10:36:09Z biological_process owl:Class GO:0044019 biolink:NamedThing histone acetyltransferase activity (H3-K72 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 72) = CoA + histone H3 N6-acetyl-L-lysine (position 72). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K72 specific) molecular_function owl:Class GO:0031812 biolink:NamedThing P2Y1 nucleotide receptor binding Binding to a P2Y1 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y1 nucleotide receptor ligand molecular_function owl:Class GO:0035067 biolink:NamedThing negative regulation of histone acetylation Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of an acetyl group to a histone protein. tmpzr1t_l9r_go_relaxed.owl inhibition of histone acetylation|down-regulation of histone acetylation|down regulation of histone acetylation|downregulation of histone acetylation biological_process owl:Class GO:2000757 biolink:NamedThing negative regulation of peptidyl-lysine acetylation Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-16T09:51:31Z biological_process owl:Class GO:0021614 biolink:NamedThing glossopharyngeal nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the glossopharyngeal nerve to attain its fully functional state. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion. tmpzr1t_l9r_go_relaxed.owl CN IX maturation biological_process owl:Class GO:1900618 biolink:NamedThing regulation of shoot system morphogenesis Any process that modulates the frequency, rate or extent of shoot morphogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of shoot morphogenesis tb 2012-05-15T09:24:37Z biological_process owl:Class GO:0071485 biolink:NamedThing cellular response to absence of light Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. tmpzr1t_l9r_go_relaxed.owl cellular response to darkness mah 2009-12-18T02:13:12Z biological_process owl:Class GO:0009646 biolink:NamedThing response to absence of light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. tmpzr1t_l9r_go_relaxed.owl response to darkness biological_process owl:Class GO:0030563 biolink:NamedThing snRNA 2'-O-ribose methylation guide activity Activity that provides specificity to a methylase by using base complementarity to guide site-specific 2'-O-ribose methylations to a small nuclear RNA molecule. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. Note that this term may be useful for annotating snoRNAs. molecular_function owl:Class GO:1900286 biolink:NamedThing negative regulation of cellotriose transport Any process that stops, prevents or reduces the frequency, rate or extent of cellotriose transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellotriose transport|down regulation of cellotriose transport|inhibition of cellotriose transport|downregulation of cellotriose transport tt 2012-04-05T05:56:56Z biological_process owl:Class GO:0090741 biolink:NamedThing pigment granule membrane Any membrane that is part of a pigment granule. tmpzr1t_l9r_go_relaxed.owl tb 2017-05-16T22:33:39Z cellular_component owl:Class GO:0006018 biolink:NamedThing 2-deoxyribose 1-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyribose 1-phosphate catabolic process|2-deoxyribose 1-phosphate breakdown|2-deoxyribose 1-phosphate degradation|2-deoxyribose 1-phosphate catabolism biological_process owl:Class GO:0045128 biolink:NamedThing negative regulation of reciprocal meiotic recombination Any process that decreases the frequency, rate or extent of recombination during meiosis. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl inhibition of meiotic recombination|down regulation of meiotic recombination|down-regulation of meiotic recombination|downregulation of meiotic recombination|suppression of meiotic recombination biological_process owl:Class GO:0048917 biolink:NamedThing posterior lateral line ganglion development The process whose specific outcome is the progression of the posterior lateral line ganglion over time, from its formation to the mature structure. The posterior lateral line ganglion develops from cranial ectodermal placodes situated behind the ear. tmpzr1t_l9r_go_relaxed.owl gPLL development biological_process owl:Class GO:0010944 biolink:NamedThing negative regulation of transcription by competitive promoter binding Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves direct competition for interaction with a promoter binding site. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900825 biolink:NamedThing regulation of membrane depolarization during cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of membrane depolarization during a cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl rl 2012-06-06T04:15:20Z biological_process owl:Class GO:0030651 biolink:NamedThing peptide antibiotic biosynthetic process The chemical reactions and pathways resulting in the formation of peptides with antibiotic activity. tmpzr1t_l9r_go_relaxed.owl peptide antibiotic synthesis|peptide antibiotic biosynthesis|peptide antibiotic formation|peptide antibiotic anabolism biological_process owl:Class GO:0017000 biolink:NamedThing antibiotic biosynthetic process The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms. tmpzr1t_l9r_go_relaxed.owl antibiotic synthesis|antibiotic formation|antibiotic biosynthesis|antibiotic anabolism biological_process owl:Class GO:1990281 biolink:NamedThing efflux pump complex A protein complex that is capable of efflux transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl efflux transmembrane transporter complex|efflux pump tt 2014-01-31T08:19:53Z cellular_component owl:Class GO:1900129 biolink:NamedThing positive regulation of G-protein activated inward rectifier potassium channel activity Any process that activates or increases the frequency, rate or extent of G-protein activated inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl upregulation of G-protein activated inward rectifier potassium channel activity|activation of G-protein-activated inward rectifier potassium channel activity|positive regulation of G protein activated inward rectifier potassium channel activity|activation of G protein enhanced inward rectifier potassium channel activity|positive regulation of G-protein-enhanced inward rectifier potassium channel activity|upregulation of G-protein enhanced inward rectifier potassium channel activity|upregulation of G protein activated inward rectifier potassium channel activity|upregulation of G-protein-enhanced inward rectifier potassium channel activity|upregulation of G-protein-activated inward rectifier potassium channel activity|up regulation of G protein enhanced inward rectifier potassium channel activity|up-regulation of G-protein-activated inward rectifier potassium channel activity|up regulation of G protein activated inward rectifier potassium channel activity|up regulation of G-protein-activated inward rectifier potassium channel activity|positive regulation of G-protein-activated inward rectifier potassium channel activity|activation of G-protein activated inward rectifier potassium channel activity|up-regulation of G protein enhanced inward rectifier potassium channel activity|up regulation of G-protein activated inward rectifier potassium channel activity|positive regulation of G-protein enhanced inward rectifier potassium channel activity|up-regulation of G-protein-enhanced inward rectifier potassium channel activity|activation of G protein activated inward rectifier potassium channel activity|up-regulation of G-protein activated inward rectifier potassium channel activity|up-regulation of G protein activated inward rectifier potassium channel activity|up regulation of G-protein enhanced inward rectifier potassium channel activity|activation of G-protein enhanced inward rectifier potassium channel activity|activation of G-protein-enhanced inward rectifier potassium channel activity|up regulation of G-protein-enhanced inward rectifier potassium channel activity|up-regulation of G-protein enhanced inward rectifier potassium channel activity|upregulation of G protein enhanced inward rectifier potassium channel activity|positive regulation of G protein enhanced inward rectifier potassium channel activity bf 2012-02-23T03:12:58Z biological_process owl:Class GO:1900128 biolink:NamedThing regulation of G-protein activated inward rectifier potassium channel activity Any process that modulates the frequency, rate or extent of G-protein activated inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of G protein activated inward rectifier potassium channel activity|regulation of G protein enhanced inward rectifier potassium channel activity|regulation of G-protein-activated inward rectifier potassium channel activity|regulation of G-protein-enhanced inward rectifier potassium channel activity|regulation of G-protein enhanced inward rectifier potassium channel activity bf 2012-02-23T03:12:53Z biological_process owl:Class GO:0017196 biolink:NamedThing N-terminal peptidyl-methionine acetylation The acetylation of the N-terminal methionine of proteins to form the derivative N-acetyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0049 biological_process owl:Class GO:0046432 biolink:NamedThing 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolic process The chemical reactions and pathways involving 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA, a derivative of coenzyme A. tmpzr1t_l9r_go_relaxed.owl 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolism biological_process owl:Class GO:1904426 biolink:NamedThing positive regulation of GTP binding Any process that activates or increases the frequency, rate or extent of GTP binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of GTP binding|activation of GTP binding|up regulation of GTP binding|upregulation of GTP binding sl 2015-07-02T20:35:07Z biological_process owl:Class GO:1905571 biolink:NamedThing interleukin-10 receptor complex A protein complex that binds interleukin-10 (IL-10) and that consists of, at a minimum, a dimeric interleukin, an alpha and a beta chain as well as optional additional kinase subunits. The alpha chain binds IL-10 with high affinity and subsequently binds the common beta receptor chain that forms part of multiple interleukin receptors. tmpzr1t_l9r_go_relaxed.owl interleukin-10-receptor complex|IL-10 receptor complex|IL-10-receptor complex|IL10 receptor complex An example of this is IL10RA in human (UniProt symbol Q13651) in PMID:16982608 (inferred from physical interaction). bhm 2016-10-19T09:45:22Z cellular_component owl:Class GO:1903705 biolink:NamedThing positive regulation of production of siRNA involved in RNA interference Any process that activates or increases the frequency, rate or extent of production of siRNA involved in RNA interference. tmpzr1t_l9r_go_relaxed.owl positive regulation of production of guide RNAs involved in RNA interference|positive regulation of RNA interference, production of guide RNAs|positive regulation of RNA interference, production of siRNA|upregulation of production of guide RNAs involved in RNA interference|upregulation of production of siRNA involved in RNA interference|activation of RNA interference, production of guide RNAs|upregulation of RNA interference, production of guide RNAs|up-regulation of RNA interference, production of siRNA|up regulation of production of guide RNAs involved in RNA interference|up regulation of RNA interference, production of siRNA|up-regulation of RNA interference, production of guide RNAs|up-regulation of production of siRNA involved in RNA interference|upregulation of RNA interference, production of siRNA|activation of production of guide RNAs involved in RNA interference|activation of RNA interference, production of siRNA|up regulation of RNA interference, production of guide RNAs|activation of production of siRNA involved in RNA interference|up-regulation of production of guide RNAs involved in RNA interference|up regulation of production of siRNA involved in RNA interference nc 2014-12-03T15:13:30Z biological_process owl:Class GO:0120143 biolink:NamedThing negative regulation of ecdysone receptor-mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of any ecdysone receptor-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T17:28:29Z biological_process owl:Class GO:0034521 biolink:NamedThing 1-naphthoic acid dioxygenase activity Catalysis of the reaction: 1-naphthoic acid + NADH + O2 + H+ = cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene + NAD+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0773|EC:1.14.12.- molecular_function owl:Class GO:0005736 biolink:NamedThing RNA polymerase I complex RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase I activity|DNA-directed RNA polymerase I complex cellular_component owl:Class GO:0018025 biolink:NamedThing calmodulin-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + calmodulin L-lysine = S-adenosyl-L-homocysteine + calmodulin N6-methyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:calmodulin-L-lysine N6-methyltransferase activity|S-adenosylmethionine:calmodulin (lysine) N-methyltransferase activity|S-adenosyl-L-methionine:calmodulin-L-lysine 6-N-methyltransferase activity RHEA:21556|EC:2.1.1.60|MetaCyc:2.1.1.60-RXN|Reactome:R-HSA-6786205 molecular_function owl:Class GO:1900963 biolink:NamedThing negative regulation of methanophenazine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of methanophenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of methanophenazine synthesis|inhibition of methanophenazine formation|negative regulation of methanophenazine formation|inhibition of methanophenazine biosynthetic process|downregulation of methanophenazine biosynthetic process|negative regulation of methanophenazine synthesis|negative regulation of methanophenazine biosynthesis|downregulation of methanophenazine anabolism|down regulation of methanophenazine biosynthesis|down regulation of methanophenazine biosynthetic process|inhibition of methanophenazine anabolism|down-regulation of methanophenazine biosynthetic process|down-regulation of methanophenazine synthesis|downregulation of methanophenazine biosynthesis|downregulation of methanophenazine formation|down regulation of methanophenazine anabolism|negative regulation of methanophenazine anabolism|down regulation of methanophenazine formation|inhibition of methanophenazine biosynthesis|down regulation of methanophenazine synthesis|down-regulation of methanophenazine biosynthesis|down-regulation of methanophenazine anabolism|down-regulation of methanophenazine formation|downregulation of methanophenazine synthesis tt 2012-06-14T03:53:38Z biological_process owl:Class GO:0000425 biolink:NamedThing pexophagy The selective autophagy process in which a peroxisome is degraded by macroautophagy. tmpzr1t_l9r_go_relaxed.owl macropexophagy biological_process owl:Class GO:0035262 biolink:NamedThing gonad morphogenesis The process in which the anatomical structures of the gonads are generated and organized. A gonad is an animal organ producing gametes, e.g. the testes or the ovary in mammals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042532 biolink:NamedThing negative regulation of tyrosine phosphorylation of STAT protein Any process that stops, prevents, or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl downregulation of tyrosine phosphorylation of Stat4 protein|inhibition of tyrosine phosphorylation of Stat5 protein|down-regulation of tyrosine phosphorylation of Stat6 protein|negative regulation of tyrosine phosphorylation of Stat1 protein|downregulation of tyrosine phosphorylation of STAT protein|down regulation of tyrosine phosphorylation of Stat6 protein|down regulation of tyrosine phosphorylation of Stat1 protein|downregulation of tyrosine phosphorylation of Stat2 protein|inhibition of tyrosine phosphorylation of Stat1 protein|down-regulation of tyrosine phosphorylation of Stat1 protein|downregulation of tyrosine phosphorylation of Stat3 protein|down regulation of tyrosine phosphorylation of STAT protein|negative regulation of tyrosine phosphorylation of Stat7 protein|downregulation of tyrosine phosphorylation of Stat1 protein|down regulation of tyrosine phosphorylation of Stat3 protein|down-regulation of tyrosine phosphorylation of Stat7 protein|down-regulation of tyrosine phosphorylation of Stat2 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|down-regulation of tyrosine phosphorylation of STAT protein|down regulation of tyrosine phosphorylation of Stat5 protein|inhibition of tyrosine phosphorylation of Stat3 protein|downregulation of tyrosine phosphorylation of Stat5 protein|downregulation of tyrosine phosphorylation of Stat7 protein|inhibition of tyrosine phosphorylation of STAT protein|down regulation of tyrosine phosphorylation of Stat7 protein|down-regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat2 protein|negative regulation of tyrosine phosphorylation of Stat4 protein|down regulation of tyrosine phosphorylation of Stat4 protein|inhibition of tyrosine phosphorylation of Stat2 protein|down regulation of tyrosine phosphorylation of Stat2 protein|negative regulation of tyrosine phosphorylation of Stat6 protein|negative regulation of tyrosine phosphorylation of Stat3 protein|down-regulation of tyrosine phosphorylation of Stat4 protein|inhibition of tyrosine phosphorylation of Stat6 protein|downregulation of tyrosine phosphorylation of Stat6 protein|inhibition of tyrosine phosphorylation of Stat7 protein|down-regulation of tyrosine phosphorylation of Stat5 protein|inhibition of tyrosine phosphorylation of Stat4 protein GO:0042512|GO:0042530|GO:0042514|GO:0042521|GO:0042524|GO:0042527|GO:0042518 biological_process owl:Class GO:1905775 biolink:NamedThing negative regulation of DNA helicase activity Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent DNA helicase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA helicase activity|negative regulation of ATP-dependent DNA helicase activity|down regulation of ATP-dependent DNA helicase activity|inhibition of ATP-dependent DNA helicase activity|down regulation of DNA helicase activity|downregulation of DNA helicase activity|down-regulation of ATP-dependent DNA helicase activity|downregulation of ATP-dependent DNA helicase activity|down-regulation of DNA helicase activity rb 2013-10-15T21:20:01Z GO:1902450 biological_process owl:Class GO:0018110 biolink:NamedThing histone arginine kinase activity Catalysis of the reaction: histone L-arginine + ATP = histone N(omega)-phospho-L-arginine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl histone-arginine kinase activity EC:2.7.3.- molecular_function owl:Class GO:0004054 biolink:NamedThing arginine kinase activity Catalysis of the reaction: L-arginine + ATP = N(omega)-phospho-L-arginine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:L-arginine N-phosphotransferase activity|adenosine 5'-triphosphate-arginine phosphotransferase activity|adenosine 5'-triphosphate:L-arginine|arginine phosphokinase activity RHEA:22940|KEGG_REACTION:R00554|EC:2.7.3.3|MetaCyc:ARGININE-KINASE-RXN molecular_function owl:Class GO:0034023 biolink:NamedThing 5-(carboxyamino)imidazole ribonucleotide mutase activity Catalysis of the reaction: 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate. tmpzr1t_l9r_go_relaxed.owl PurE|class I PurE|N5-CAIR mutase activity|N5-carboxyaminoimidazole ribonucleotide mutase activity|5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole carboxymutase activity MetaCyc:5.4.99.18-RXN|RHEA:13193|EC:5.4.99.18 molecular_function owl:Class GO:0030677 biolink:NamedThing ribonuclease P complex A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs. tmpzr1t_l9r_go_relaxed.owl RNase P complex Note that chloroplasts possess a complex that is called 'RNase P' because it catalyzes pre-tRNA cleavage, but the chloroplast complex appears not to contain RNA. cellular_component owl:Class GO:0039684 biolink:NamedThing rolling circle single-stranded viral DNA replication A rolling circle viral DNA replication that begins with a single-stranded viral DNA genome. tmpzr1t_l9r_go_relaxed.owl ssDNA rolling circle replication VZ:1941 bf 2013-10-17T14:15:48Z biological_process owl:Class GO:0039682 biolink:NamedThing rolling circle viral DNA replication A process of unidirectional viral DNA replication that takes place on a circular DNA to rapidly produce numerous copies of the viral genome. Involves creating a nick in one strand of the circular DNA molecule at the origin of replication. DNA is then synthesized by DNA polymerase. Using the non-nicked strand as a template, replication proceeds around the circular DNA molecule, displacing the nicked strand as single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl bf 2013-10-17T14:13:51Z biological_process owl:Class GO:0009683 biolink:NamedThing indoleacetic acid metabolic process The chemical reactions and pathways involving indole-3-acetic acid, a compound which functions as a growth regulator in plants. tmpzr1t_l9r_go_relaxed.owl IAA metabolic process|indole acetic acid metabolism|indoleacetic acid metabolism|indole acetic acid metabolic process biological_process owl:Class GO:0048821 biolink:NamedThing erythrocyte development The process whose specific outcome is the progression of an erythrocyte over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl RBC development|red blood cell development biological_process owl:Class GO:0006696 biolink:NamedThing ergosterol biosynthetic process The chemical reactions and pathways resulting in the formation of ergosterol, (22E)-ergosta-5,7,22-trien-3-beta-ol, a sterol found in ergot, yeast and moulds. tmpzr1t_l9r_go_relaxed.owl ergosterol formation|ergosterol biosynthesis|ergosterol synthesis|ergosterol anabolism biological_process owl:Class GO:1901588 biolink:NamedThing dendritic microtubule Any microtubule in a dendrite, a neuron projection. tmpzr1t_l9r_go_relaxed.owl microtubule of dendrite|microtubulus of dendrite NIF_Subcellular:sao110773650 pr 2012-11-07T14:37:30Z cellular_component owl:Class GO:0008247 biolink:NamedThing 1-alkyl-2-acetylglycerophosphocholine esterase complex An enzyme complex composed of two catalytic alpha subunits, which form a catalytic dimer, and a non-catalytic, regulatory beta subunit; the catalytic dimer may be an alpha1/alpha1 or alpha2/alpha2 homodimer, or an alpha1/alpha2 heterodimer. Modulates the action of platelet-activating factor (PAF). tmpzr1t_l9r_go_relaxed.owl 2-acetyl-1-alkylglycerophosphocholine esterase complex|platelet-activating factor acetylhydrolase complex See also the molecular function term '1-alkyl-2-acetylglycerophosphocholine esterase activity ; GO:0003847'. cellular_component owl:Class GO:0140467 biolink:NamedThing integrated stress response signaling The series of molecular signals generated in response to diverse stress stimuli required to restore cellular homeostasis. The core event in this pathway is the phosphorylation of eIF2 alpha by one of four members of the eIF2a kinase family (EIF2AK1/HRI, EIF2AK2/PKR, EIF2AK3/PERK and EIF2AK4/GCN2), which leads to a decrease in global protein synthesis and the induction of selected genes, including the transcription factor ATF4, that together promote cellular recovery. tmpzr1t_l9r_go_relaxed.owl ISR https://github.com/geneontology/go-ontology/issues/19153 Wikipedia:Integrated_stress_response pg 2020-05-26T08:04:10Z biological_process owl:Class GO:0051507 biolink:NamedThing beta-sitosterol UDP-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a beta-sitosterol = UDP + O-glucosyl-beta-sitosterol. tmpzr1t_l9r_go_relaxed.owl RHEA:61832|MetaCyc:RXN-12128 molecular_function owl:Class GO:0016906 biolink:NamedThing sterol 3-beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a sterol = UDP + an O-glucosylsterol. tmpzr1t_l9r_go_relaxed.owl sterol 3beta-glucosyltransferase activity|sterol glucosyltransferase activity|UDPG-SGTase activity|sterol:UDPG glucosyltransferase activity|UDP-glucose:sterol 3-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-sterol glucosyltransferase activity|UDP-glucose-sterol glucosyltransferase activity|uridine diphosphoglucose-poriferasterol glucosyltransferase activity|UDPG:sterol glucosyltransferase activity|UDP-glucose-sterol beta-glucosyltransferase activity|sterol-beta-D-glucosyltransferase activity|UDPglucose:sterol 3-O-beta-D-glucosyltransferase activity|UDP-glucose:sterol glucosyltransferase activity EC:2.4.1.173|MetaCyc:STEROL-GLUCOSYLTRANSFERASE-RXN|RHEA:22724 molecular_function owl:Class GO:2001206 biolink:NamedThing positive regulation of osteoclast development Any process that activates or increases the frequency, rate or extent of osteoclast development. tmpzr1t_l9r_go_relaxed.owl positive regulation of osteoclast cell development yaf 2011-11-10T10:59:12Z biological_process owl:Class GO:0015451 biolink:NamedThing decarboxylation-driven active transmembrane transporter activity Primary active transport of a solute across a membrane driven by decarboxylation of a cytoplasmic substrate. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source. tmpzr1t_l9r_go_relaxed.owl decarboxylation-driven transporter EC:7.2.4.4|EC:7.2.4.3|EC:7.2.4.2|TC:3.B|EC:7.2.4.5|EC:7.2.4.1 molecular_function owl:Class GO:0015399 biolink:NamedThing primary active transmembrane transporter activity Enables the transfer of a solute from one side of a membrane to the other, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is powered by a primary energy source, directly using ATP. Primary energy sources known to be coupled to transport are chemical, electrical and solar sources. tmpzr1t_l9r_go_relaxed.owl primary active transporter TC:3 molecular_function owl:Class GO:0043660 biolink:NamedThing bacteroid-containing symbiosome A symbiosome containing any of various structurally modified bacteria, such as those occurring on the root nodules of leguminous plants. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043659 biolink:NamedThing symbiosome A double-enveloped cell compartment, composed of an endosymbiont with its plasmalemma (as inner envelope) and a non-endosymbiotic outer envelope (the perisymbiontic membrane). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010331 biolink:NamedThing gibberellin binding Binding to a gibberellin, a plant hormone that regulates aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl gibberellin receptor|gibberellic acid receptor molecular_function owl:Class GO:1904511 biolink:NamedThing cytoplasmic microtubule plus-end Any microtubule plus-end that is part of a cytoplasmic microtubule. tmpzr1t_l9r_go_relaxed.owl growing microtubule plus end of cytoplasmic microtubule|microtubule plus end of non-spindle-associated astral microtubule|microtubule plus-end of non-spindle-associated astral microtubule|microtubule plus end of cytoplasmic microtubule|microtubule plus-end of cytoplasmic microtubule|growing microtubule plus end of non-spindle-associated astral microtubule mah 2015-07-27T13:05:11Z cellular_component owl:Class GO:2001054 biolink:NamedThing negative regulation of mesenchymal cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of mesenchymal cell apoptosis yaf 2011-09-08T02:50:05Z biological_process owl:Class GO:2001053 biolink:NamedThing regulation of mesenchymal cell apoptotic process Any process that modulates the frequency, rate or extent of mesenchymal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of mesenchymal cell apoptosis yaf 2011-09-08T02:49:59Z biological_process owl:Class GO:1900938 biolink:NamedThing regulation of (Z)-nonadeca-1,14-diene metabolic process Any process that modulates the frequency, rate or extent of (Z)-nonadeca-1,14-diene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of (Z)-nonadeca-1,14-diene metabolism tt 2012-06-14T03:15:37Z biological_process owl:Class GO:1904980 biolink:NamedThing positive regulation of endosome organization Any process that activates or increases the frequency, rate or extent of endosome organization. tmpzr1t_l9r_go_relaxed.owl activation of endosome organisation|activation of endosome organization and biogenesis|up-regulation of endosome organization|upregulation of endosome organisation|up-regulation of endosome organisation|upregulation of endosome organization and biogenesis|positive regulation of endosome organization and biogenesis|up regulation of endosome organisation|up regulation of endosome organization|upregulation of endosome organization|up-regulation of endosome organization and biogenesis|up regulation of endosome organization and biogenesis|activation of endosome organization|positive regulation of endosome organisation pad 2016-02-22T19:21:16Z biological_process owl:Class GO:1904978 biolink:NamedThing regulation of endosome organization Any process that modulates the frequency, rate or extent of endosome organization. tmpzr1t_l9r_go_relaxed.owl regulation of endosome organization and biogenesis|regulation of endosome organisation pad 2016-02-22T19:21:01Z biological_process owl:Class GO:1903433 biolink:NamedThing regulation of constitutive secretory pathway Any process that modulates the frequency, rate or extent of constitutive secretory pathway. tmpzr1t_l9r_go_relaxed.owl als 2014-09-15T15:07:31Z biological_process owl:Class GO:1905164 biolink:NamedThing positive regulation of phagosome maturation Any process that activates or increases the frequency, rate or extent of phagosome maturation. tmpzr1t_l9r_go_relaxed.owl activation of phagosome maturation|up-regulation of phagosome maturation|up regulation of phagosome maturation|upregulation of phagosome maturation bf 2016-04-25T16:28:19Z biological_process owl:Class GO:0050284 biolink:NamedThing sinapate 1-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + sinapate = UDP + 1-sinapoyl-D-glucose. tmpzr1t_l9r_go_relaxed.owl UDPglucose:sinapic acid glucosyltransferase activity|UDP-glucose:sinapate D-glucosyltransferase activity|UDPglucose:sinapate D-glucosyltransferase activity|uridine diphosphoglucose-sinapate glucosyltransferase activity|uridine 5'-diphosphoglucose-hydroxycinnamic acid acylglucosyltransferase activity RHEA:13305|MetaCyc:SINAPATE-1-GLUCOSYLTRANSFERASE-RXN|EC:2.4.1.120 molecular_function owl:Class GO:0031390 biolink:NamedThing Ctf18 RFC-like complex A heptameric complex related to replication factor C, which loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA and plays a vital role in chromosome cohesion. In Saccharomyces the subunits are known as Ctf18p, Rfc2p, Rfc3p, Rfc4p, Rfc5p, Dcc1p, and Ctf8p. tmpzr1t_l9r_go_relaxed.owl Ctf18-RLC|RFC (Ctf18)|Ctf18-RFC cellular_component owl:Class GO:0006334 biolink:NamedThing nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. tmpzr1t_l9r_go_relaxed.owl nucleosome modeling|histone chaperone biological_process owl:Class GO:0032718 biolink:NamedThing negative regulation of interleukin-9 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-9 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-9 biosynthetic process|inhibition of interleukin-9 production|down regulation of interleukin-9 production|down-regulation of interleukin-9 production|negative regulation of IL-9 production|downregulation of interleukin-9 production GO:0045418 biological_process owl:Class GO:0030839 biolink:NamedThing regulation of intermediate filament polymerization Any process that modulates the frequency, rate or extent of the assembly of intermediate filaments by the addition of monomers to a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072011 biolink:NamedThing glomerular endothelium development The process whose specific outcome is the progression of the glomerular endothelium over time, from its formation to the mature structure. The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:02:57Z biological_process owl:Class GO:1905385 biolink:NamedThing negative regulation of protein localization to presynapse Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to presynapse. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation to presynapse|downregulation of protein localisation to presynapse|down regulation of protein localization to presynapse|negative regulation of recruitment of presynaptic proteins|downregulation of recruitment of presynaptic proteins|down regulation of protein localisation in presynapse|negative regulation of protein localization in presynapse|down-regulation of recruitment of presynaptic proteins|downregulation of protein localisation in presynapse|downregulation of protein localization to presynapse|down regulation of protein localisation to presynapse|inhibition of protein localisation in presynapse|down regulation of recruitment of presynaptic proteins|inhibition of recruitment of presynaptic proteins|inhibition of protein localization in presynapse|inhibition of protein localization to presynapse|down-regulation of protein localisation to presynapse|down regulation of protein localization in presynapse|downregulation of protein localization in presynapse|down-regulation of protein localisation in presynapse|negative regulation of protein localisation in presynapse|down-regulation of protein localization to presynapse|down-regulation of protein localization in presynapse|inhibition of protein localisation to presynapse dos 2016-08-18T14:56:08Z biological_process owl:Class GO:1905384 biolink:NamedThing regulation of protein localization to presynapse Any process that modulates the frequency, rate or extent of protein localization to presynapse. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to presynapse|regulation of recruitment of presynaptic proteins|regulation of protein localisation in presynapse|regulation of protein localization in presynapse dos 2016-08-18T14:56:00Z biological_process owl:Class GO:0043419 biolink:NamedThing urea catabolic process The chemical reactions and pathways resulting in the breakdown of urea, the water soluble compound O=C-(NH2)2. tmpzr1t_l9r_go_relaxed.owl urea decomposition|urea degradation|urea breakdown|urea catabolism biological_process owl:Class GO:0043605 biolink:NamedThing cellular amide catabolic process The chemical reactions and pathways resulting in the breakdown of an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097379 biolink:NamedThing dorsal spinal cord interneuron posterior axon guidance The process in which the migration of an axon growth cone of a dorsal spinal cord interneuron is directed to a specific target site in the posterior direction along the anterior-posterior body axis in response to a combination of attractive and repulsive cues. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. tmpzr1t_l9r_go_relaxed.owl dorsal interneuron caudal axon projection pr 2012-10-01T10:22:38Z biological_process owl:Class GO:0097378 biolink:NamedThing dorsal spinal cord interneuron axon guidance The process in which the migration of an axon growth cone of a dorsal spinal cord interneuron is directed to a specific target site in response to a combination of attractive and repulsive cues. A dorsal spinal cord interneuron is an interneuron located in the dorsal part of the spinal cord. tmpzr1t_l9r_go_relaxed.owl dorsal interneuron axon guidance pr 2012-10-01T10:20:48Z biological_process owl:Class GO:0036013 biolink:NamedThing cyanelle outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the cyanelle envelope. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-10T01:50:56Z cellular_component owl:Class GO:0017143 biolink:NamedThing insecticide metabolic process The chemical reactions and pathways involving insecticides, chemicals used to kill insects. tmpzr1t_l9r_go_relaxed.owl insecticide metabolism GO:0017138 biological_process owl:Class GO:0039509 biolink:NamedThing suppression by virus of host pattern recognition receptor activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host pattern recognition receptor. A pattern recognition receptor combines with a molecular pattern based on a repeating or polymeric structure, such as a polysaccharide or peptidoglycan, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl down regulation by virus of host pattern recognition receptor activity|suppression by virus of host pattern recognition receptor function|inhibition by virus of host pattern recognition receptor activity|viral inhibition of host pattern recognition receptor activity|down-regulation by virus of host pattern recognition receptor activity|negative regulation by virus of host pattern recognition receptor activity bf 2011-06-02T03:11:23Z biological_process owl:Class GO:0039508 biolink:NamedThing suppression by virus of host receptor activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host receptor. tmpzr1t_l9r_go_relaxed.owl downregulation by virus of host receptor activity|negative regulation by virus of host receptor activity|viral inhibition of host receptor|suppression by virus of host receptor function|inhibition by virus of host receptor activity|down-regulation by virus of host receptor activity bf 2011-06-02T03:09:37Z biological_process owl:Class GO:0120277 biolink:NamedThing positive regulation of cerebral blood circulation Any process that activates or increases the frequency, rate or extent of cerebral blood circulation. tmpzr1t_l9r_go_relaxed.owl positive regulation of telencephalon blood circulation|up-regulation of cerebral blood circulation|activation of cerebral blood circulation|positive regulation of cerebrum blood circulation|up regulation of cerebral blood circulation|upregulation of cerebral blood circulation https://github.com/geneontology/go-ontology/issues/20107 krc 2020-10-21T06:55:42Z biological_process owl:Class GO:0005750 biolink:NamedThing mitochondrial respiratory chain complex III A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1. tmpzr1t_l9r_go_relaxed.owl mitochondrial complex III|mitochondrial cytochrome bc(1) complex|mitochondrial electron transport complex III|mitochondrial coenzyme Q-cytochrome c reductase complex|mitochondrial ubiquinol-cytochrome-c reductase complex|mitochondrial cytochrome bc1 complex|mitochondrial ubiquinol-cytochrome c oxidoreductase complex|mitochondrial coenzyme Q-cytochrome c oxidoreductase complex GO:0015008 cellular_component owl:Class GO:0045275 biolink:NamedThing respiratory chain complex III A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species. tmpzr1t_l9r_go_relaxed.owl coenzyme Q-cytochrome c reductase complex|complex III|ubiquinol-cytochrome-c reductase complex|coenzyme Q-cytochrome c oxidoreductase complex|ubiquinol-cytochrome c oxidoreductase complex|cytochrome bc1 complex|cytochrome bc(1) complex|CoQH2-cytochrome c reductase complex|electron transport complex III Wikipedia:Coenzyme_Q_-_cytochrome_c_reductase GO:0045285|GO:0032842 cellular_component owl:Class GO:0043833 biolink:NamedThing methylamine-specific methylcobalamin:coenzyme M methyltransferase activity Catalysis of the reaction: a methylated methylamine corrinoid protein + coenzyme M = a methylamine corrinoid protein + methyl-CoM. This reaction is the transfer of the methyl group from the methylated corrinoid cofactor of a methylamine corrinoid protein to coenzyme M. tmpzr1t_l9r_go_relaxed.owl methylamine-specific methylcobalamin:CoM methyltransferase activity|methylcobamide:CoM methyltransferase activity|monomethylamine-specific methylcobalamin:coenzyme M methyltransferase activity|methylcobamide:CoM methyltransferase II isozyme A|methylcobamide:coenzyme M methyltransferase activity EC:2.1.1.247|MetaCyc:RXN-8099|MetaCyc:RXN-8103|MetaCyc:RXN-8101 This function is the second step in the pathway of methanogenesis from monomethylamine, dimethylamine and trimethylamine. molecular_function owl:Class GO:0075261 biolink:NamedThing positive regulation of spore-bearing organ development Any process that activates, maintains or increases the frequency, rate or extent of spore-bearing organ development, a process in which hyphae grow into special aggregates called fruiting bodies that produce new spores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010728 biolink:NamedThing regulation of hydrogen peroxide biosynthetic process Any process that modulates the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen peroxide biosynthesis biological_process owl:Class GO:0039631 biolink:NamedThing DNA translocase activity involved in viral DNA genome packaging Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule, that contributes to the packing of viral DNA into a capsid. tmpzr1t_l9r_go_relaxed.owl viral DNA packaging activity|viral DNA packaging motor activity bf 2012-08-07T11:17:07Z molecular_function owl:Class GO:0048139 biolink:NamedThing female germ-line cyst encapsulation Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the female gonad. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008441 biolink:NamedThing 3'(2'),5'-bisphosphate nucleotidase activity Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylylsulfate 3'-phosphatase activity|adenosine-3'(2'),5'-bisphosphate 3'(2')-phosphohydrolase activity|DPNPase activity|3'(2'),5' bisphosphate nucleotidase activity|phosphoadenylate 3'-nucleotidase activity|3'(2'),5'-bisphosphonucleoside 3'(2')-phosphohydrolase activity Reactome:R-HSA-8953499|Reactome:R-HSA-176606|RHEA:10040|MetaCyc:325-BISPHOSPHATE-NUCLEOTIDASE-RXN|EC:3.1.3.7 molecular_function owl:Class GO:0008252 biolink:NamedThing nucleotidase activity Catalysis of the reaction: a nucleotide + H2O = a nucleoside + phosphate. tmpzr1t_l9r_go_relaxed.owl nucleotide-specific phosphatase activity|acid nucleotidase activity|NSP II|deoxyribonucleoside-activated nucleotidase (DAN)|nucleotide phosphohydrolase activity|NSP I|deoxyinosine-activated nucleotidase (DIAN) MetaCyc:NUCLEOTIDASE-RXN|RHEA:22140 molecular_function owl:Class GO:1902949 biolink:NamedThing positive regulation of tau-protein kinase activity Any process that activates or increases the frequency, rate or extent of tau-protein kinase activity. tmpzr1t_l9r_go_relaxed.owl activation of STK31|positive regulation of glycogen synthase kinase-3beta activity|positive regulation of tau kinase activity|upregulation of protein tau kinase activity|up-regulation of STK31|up-regulation of tau-protein kinase I activity|upregulation of tau-protein kinase activity|activation of tau protein kinase activity|upregulation of TPK I|positive regulation of TPK II|upregulation of cdk5/p20|positive regulation of GSK|upregulation of tau-tubulin kinase activity|upregulation of tau-protein kinase II activity|up-regulation of TTK|positive regulation of cdk5/p20|up-regulation of TPK|up-regulation of GSK|positive regulation of CDK5/p23|up regulation of GSK|activation of GSK|activation of protein tau kinase activity|upregulation of glycogen synthase kinase-3beta activity|activation of [Tau protein] kinase activity|up regulation of TTK|up regulation of protein tau kinase activity|positive regulation of TTK|positive regulation of tau protein kinase activity|positive regulation of brain protein kinase PK40erk activity|positive regulation of protein tau kinase activity|upregulation of TPK|positive regulation of STK31|activation of CDK5/p23|up regulation of tau-tubulin kinase activity|up regulation of glycogen synthase kinase-3beta activity|upregulation of GSK|activation of tau-protein kinase I activity|activation of tau kinase activity|up regulation of brain protein kinase PK40erk activity|up regulation of CDK5/p23|upregulation of CDK5/p23|activation of tau-tubulin kinase activity|up-regulation of tau-tubulin kinase activity|positive regulation of TPK I|up-regulation of tau-protein kinase activity|activation of brain protein kinase PK40erk activity|upregulation of [Tau protein] kinase activity|up-regulation of tau-protein kinase II activity|up regulation of tau-protein kinase II activity|up-regulation of protein tau kinase activity|activation of TPK I|upregulation of TTK|positive regulation of tau-protein kinase I activity|activation of tau-protein kinase activity|up regulation of tau kinase activity|activation of TPK II|up-regulation of TPK II|activation of glycogen synthase kinase-3beta activity|upregulation of brain protein kinase PK40erk activity|activation of TPK|positive regulation of TPK|up-regulation of tau kinase activity|up-regulation of [Tau protein] kinase activity|up regulation of [Tau protein] kinase activity|upregulation of tau kinase activity|up regulation of TPK|up-regulation of TPK I|up-regulation of glycogen synthase kinase-3beta activity|positive regulation of tau-tubulin kinase activity|upregulation of tau protein kinase activity|up regulation of TPK II|up regulation of tau protein kinase activity|up regulation of STK31|activation of cdk5/p20|upregulation of TPK II|up-regulation of tau protein kinase activity|up-regulation of CDK5/p23|up regulation of tau-protein kinase activity|activation of TTK|up regulation of cdk5/p20|positive regulation of tau-protein kinase II activity|up regulation of TPK I|up-regulation of cdk5/p20|up regulation of tau-protein kinase I activity|up-regulation of brain protein kinase PK40erk activity|upregulation of tau-protein kinase I activity|positive regulation of [Tau protein] kinase activity|activation of tau-protein kinase II activity|upregulation of STK31 sjp 2014-05-02T08:43:38Z biological_process owl:Class GO:0016101 biolink:NamedThing diterpenoid metabolic process The chemical reactions and pathways involving diterpenoid compounds, terpenoids with four isoprene units. tmpzr1t_l9r_go_relaxed.owl diterpene metabolic process|diterpenoid metabolism|diterpene metabolism biological_process owl:Class GO:0031712 biolink:NamedThing B1 bradykinin receptor binding Binding to a B1 bradykinin receptor. tmpzr1t_l9r_go_relaxed.owl B1 bradykinin receptor ligand molecular_function owl:Class GO:0031711 biolink:NamedThing bradykinin receptor binding Binding to a bradykinin receptor. tmpzr1t_l9r_go_relaxed.owl bradykinin receptor ligand molecular_function owl:Class GO:0043322 biolink:NamedThing negative regulation of natural killer cell degranulation Any process that stops, prevents, or reduces the rate of natural killer cell degranulation. tmpzr1t_l9r_go_relaxed.owl down-regulation of natural killer cell degranulation|negative regulation of NK cell granule exocytosis|negative regulation of NK cell degranulation|inhibition of natural killer cell degranulation|downregulation of natural killer cell degranulation|negative regulation of natural killer cell granule exocytosis|down regulation of natural killer cell degranulation biological_process owl:Class GO:1902509 biolink:NamedThing methionine-importing complex A protein complex which is capable of methionine-importing activity. tmpzr1t_l9r_go_relaxed.owl methionine importing complex|methionine importer complex pr 2013-11-15T10:42:41Z cellular_component owl:Class GO:2000855 biolink:NamedThing regulation of mineralocorticoid secretion Any process that modulates the frequency, rate or extent of mineralocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:46:38Z biological_process owl:Class GO:0106339 biolink:NamedThing tRNA (cytidine 32-2'-O)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + cytosine32 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylcytidine32 in tRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2020-11-05T22:48:53Z molecular_function owl:Class GO:0052666 biolink:NamedThing tRNA (cytosine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methylcytosine. tmpzr1t_l9r_go_relaxed.owl transfer ribonucleate cytosine 2'-methyltransferase activity|tRNA cytosine 2'-methyltransferase activity|tRNA (cytosine 2')-methyltransferase activity|S-adenosyl-L-methionine:tRNA (cytosine-2'-O-)-methyltransferase activity|tRNA cytosine-2'-O-methyltransferase activity|S-adenosyl-L-methionine:tRNA cytosine-2'-O-methyltransferase activity Reactome:R-HSA-9024159|Reactome:R-HSA-6788668|Reactome:R-HSA-6788684|MetaCyc:RXN0-5143 ai 2010-10-11T01:05:47Z molecular_function owl:Class GO:1905013 biolink:NamedThing negative regulation of 'de novo' NAD biosynthetic process from tryptophan Any process that stops, prevents or reduces the frequency, rate or extent of 'de novo' NAD biosynthetic process from tryptophan. tmpzr1t_l9r_go_relaxed.owl down regulation of 'de novo' NAD biosynthetic process from tryptophan|downregulation of de novo NAD biosynthetic process from tryptophan|down regulation of de novo NAD biosynthetic process from tryptophan|down-regulation of de novo NAD biosynthetic process from tryptophan|down-regulation of 'de novo' NAD biosynthetic process from tryptophan|negative regulation of de novo NAD biosynthetic process from tryptophan|inhibition of 'de novo' NAD biosynthetic process from tryptophan|inhibition of de novo NAD biosynthetic process from tryptophan|downregulation of 'de novo' NAD biosynthetic process from tryptophan bf 2016-03-03T10:01:00Z biological_process owl:Class GO:0050989 biolink:NamedThing N-terminal protein amino acid carboxylation The carboxylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039657 biolink:NamedThing suppression by virus of host gene expression Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl host gene expression shutoff by virus VZ:1582 bf 2013-06-20T15:29:55Z biological_process owl:Class GO:0051503 biolink:NamedThing adenine nucleotide transport The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033922 biolink:NamedThing peptidoglycan beta-N-acetylmuramidase activity Catalysis of the hydrolysis of terminal, non-reducing N-acetylmuramic residues. tmpzr1t_l9r_go_relaxed.owl beta-2-acetamido-3-O-(D-1-carboxyethyl)-2-deoxy-D-glucoside acetamidodeoxyglucohydrolase activity|exo-beta-N-acetylmuramidase activity|peptidoglycan beta-N-acetylmuramoylexohydrolase activity|exo-beta-acetylmuramidase activity EC:3.2.1.92|MetaCyc:3.2.1.92-RXN molecular_function owl:Class GO:1905247 biolink:NamedThing positive regulation of aspartic-type peptidase activity Any process that activates or increases the frequency, rate or extent of aspartic-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of aspartic-type peptidase activity|activation of aspartic-type peptidase activity|up regulation of aspartic-type peptidase activity|upregulation of aspartic-type peptidase activity jl 2016-06-09T11:55:55Z biological_process owl:Class GO:0071370 biolink:NamedThing cellular response to gibberellin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to gibberellic acid stimulus mah 2009-12-11T03:14:21Z biological_process owl:Class GO:0033480 biolink:NamedThing UDP-D-galacturonate biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-D-galacturonate, a substance composed of galacturonic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-galacturonate anabolism|UDP-D-galacturonate synthesis|UDP-D-galacturonate formation|UDP-D-galacturonate biosynthesis MetaCyc:PWY-4 biological_process owl:Class GO:0033479 biolink:NamedThing UDP-D-galacturonate metabolic process The chemical reactions and pathways involving UDP-D-galacturonate, a substance composed of galacturonic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-galacturonate metabolism biological_process owl:Class GO:2000459 biolink:NamedThing negative regulation of astrocyte chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:54:28Z biological_process owl:Class GO:0090518 biolink:NamedThing L-arginine transmembrane import into vacuole The directed movement of L-arginine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl arginine transmembrane import into vacuole|vacuolar arginine import tb 2012-09-24T14:12:46Z GO:0090458 biological_process owl:Class GO:0034490 biolink:NamedThing basic amino acid transmembrane import into vacuole The directed movement of basic amino acids into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034276 biolink:NamedThing kynurenic acid biosynthetic process The chemical reactions and pathways resulting in the formation of kynurenic acid, 4-hydroxyquinoline-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyquinoline-2-carboxylic acid biosynthetic process|kynurenic acid formation|kynurenic acid biosynthesis|kynurenic acid synthesis|kynurenic acid anabolism biological_process owl:Class GO:0051465 biolink:NamedThing negative regulation of corticotropin-releasing hormone secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of corticotropin-releasing hormone from a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of corticotropin-releasing hormone secretion|negative regulation of corticotropin-releasing factor secretion|downregulation of corticotropin-releasing hormone secretion|down regulation of corticotropin-releasing hormone secretion|negative regulation of CRH secretion|down-regulation of corticotropin-releasing hormone secretion|negative regulation of CRF secretion biological_process owl:Class GO:0060875 biolink:NamedThing lateral semicircular canal development The progession of the lateral semicircular canal from its initial formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:43:25Z biological_process owl:Class GO:0034899 biolink:NamedThing trimethylamine monooxygenase activity Catalysis of the reaction: N,N,N-trimethylamine + NADPH + H+ + O2 = N,N,N-trimethylamine N-oxide + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R05623|UM-BBD_reactionID:r1407|RHEA:31979|EC:1.14.13.148 molecular_function owl:Class GO:1905207 biolink:NamedThing regulation of cardiocyte differentiation Any process that modulates the frequency, rate or extent of cardiocyte differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of heart cell differentiation|regulation of cardiac cell differentiation bc 2016-06-02T07:20:01Z biological_process owl:Class GO:0005456 biolink:NamedThing CMP-N-acetylneuraminate transmembrane transporter activity Enables the transfer of a CMP-N-acetylneuraminate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl CMP-sialic acid transmembrane transporter activity Reactome:R-HSA-5651942|Reactome:R-HSA-727807 molecular_function owl:Class GO:0003263 biolink:NamedThing cardioblast proliferation The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T02:13:05Z biological_process owl:Class GO:0032566 biolink:NamedThing dGDP binding Binding to dGDP, deoxyguanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009557 biolink:NamedThing antipodal cell differentiation The process in which an uncellularized nucleus cellularizes and acquires the specialized features of an antipodal cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048402 biolink:NamedThing intermediate mesoderm structural organization The process that contributes to the act of creating the structural organization of the intermediate mesoderm. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl intermediate mesoderm structural organisation biological_process owl:Class GO:0048338 biolink:NamedThing mesoderm structural organization The process that contributes to the act of creating the structural organization of the mesoderm. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl mesoderm structural organisation biological_process owl:Class GO:0046279 biolink:NamedThing 3,4-dihydroxybenzoate biosynthetic process The chemical reactions and pathways resulting in the formation of 3,4-dihydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl protocatechuate synthesis|protocatechuate formation|protocatechuate biosynthesis|protocatechuate biosynthetic process|protocatechuate anabolism biological_process owl:Class GO:0051758 biolink:NamedThing homologous chromosome movement towards spindle pole in meiosis I anaphase The directed movement of homologous chromosomes from the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during meiosis I anaphase. tmpzr1t_l9r_go_relaxed.owl homologous chromosome movement towards spindle pole during meiosis I|meiosis I, homologous chromosome movement towards spindle pole biological_process owl:Class GO:0033861 biolink:NamedThing negative regulation of NAD(P)H oxidase activity Any process that stops or reduces the activity of the enzyme NAD(P)H oxidase. tmpzr1t_l9r_go_relaxed.owl down-regulation of NAD(P)H oxidase activity|down regulation of NAD(P)H oxidase activity|downregulation of NAD(P)H oxidase activity|inhibition of NAD(P)H oxidase activity biological_process owl:Class GO:1990654 biolink:NamedThing sebum secreting cell proliferation The multiplication or reproduction of sebocytes by cell division, resulting in the expansion of their population. A sebocyte is an epithelial cell that makes up the sebaceous glands, and secrete sebum. tmpzr1t_l9r_go_relaxed.owl sebocyte proliferation hjd 2015-02-23T19:43:49Z biological_process owl:Class GO:1900326 biolink:NamedThing positive regulation of maltotriulose transport Any process that activates or increases the frequency, rate or extent of maltotriulose transport. tmpzr1t_l9r_go_relaxed.owl activation of maltotriulose transport|up-regulation of maltotriulose transport|up regulation of maltotriulose transport|upregulation of maltotriulose transport tt 2012-04-06T01:48:25Z biological_process owl:Class GO:0042970 biolink:NamedThing homoserine transmembrane transporter activity Enables the transfer of homoserine from one side of a membrane to the other. Homoserine is alpha-amino-gamma-hydroxybutyric acid, an intermediate in the biosynthesis of cystathionine, threonine and methionine. tmpzr1t_l9r_go_relaxed.owl homoserine transporter activity molecular_function owl:Class GO:0050132 biolink:NamedThing N-methylalanine dehydrogenase activity Catalysis of the reaction: N-methyl-L-alanine + H(2)O + NADP(+) = H(+) + methylammonium + NADPH + pyruvate. tmpzr1t_l9r_go_relaxed.owl N-methyl-L-alanine:NADP+ oxidoreductase (demethylating, deaminating) MetaCyc:N-METHYLALANINE-DEHYDROGENASE-RXN|RHEA:21768|KEGG_REACTION:R01584|EC:1.4.1.17 molecular_function owl:Class GO:0045855 biolink:NamedThing negative regulation of pole plasm oskar mRNA localization Any process that stops, prevents, or reduces the frequency, rate or extent of a process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm. tmpzr1t_l9r_go_relaxed.owl inhibition of pole plasm oskar mRNA localization|down-regulation of pole plasm oskar mRNA localization|downregulation of pole plasm oskar mRNA localization|down regulation of pole plasm oskar mRNA localization|negative regulation of pole plasm oskar mRNA localisation|negative regulation of oocyte pole plasm oskar mRNA localization biological_process owl:Class GO:0072763 biolink:NamedThing cellular response to hesperadin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hesperadin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:50:58Z biological_process owl:Class GO:1990786 biolink:NamedThing cellular response to dsDNA Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-24T22:48:25Z biological_process owl:Class GO:0051949 biolink:NamedThing negative regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of GABA reuptake|inhibition of gamma-aminobutyric acid uptake during transmission of nerve impulse|negative regulation of 4-aminobutyrate reuptake|negative regulation of GABA uptake during transmission of nerve impulse|negative regulation of gamma-aminobutyric acid uptake involved in conduction of nerve impulse|negative regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|downregulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|down-regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|down regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse|negative regulation of gamma-aminobutyric acid reuptake|negative regulation of 4-aminobutyrate uptake during transmission of nerve impulse biological_process owl:Class GO:0102502 biolink:NamedThing ADP-glucose-starch glucosyltransferase activity Catalysis of the reaction: ADP alpha-D-glucoside + n a 1,4-alpha-D-glucan = ADP + n alpha-amylose. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.242|MetaCyc:RXN-14378 molecular_function owl:Class GO:0033840 biolink:NamedThing NDP-glucose-starch glucosyltransferase activity Catalysis of the reaction: NDP-glucose + (1,4-alpha-D-glucosyl)n = NDP + (1,4-alpha-D-glucosyl)n+1. tmpzr1t_l9r_go_relaxed.owl starch synthase II activity|granule-bound starch synthase I activity|granule-bound starch synthase II activity|GBSSI|GBSSII|waxy protein|GBSS|NDP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity|NDPglucose-starch glucosyltransferase activity|starch granule-bound nucleoside diphosphate glucose-starch glucosyltransferase activity|granule-bound starch synthase activity RHEA:15873|MetaCyc:2.4.1.242-RXN|EC:2.4.1.242 molecular_function owl:Class GO:0010357 biolink:NamedThing homogentisate solanesyltransferase activity Catalysis of the reaction: homogentisic acid + all-trans-nonaprenyl diphosphate + 3 H+ = 2-methyl-6-solanyl-1,4-benzoquinonone + CO2 + diphosphate. 2-methyl-6-solanyl-1,4-benzoquinonone is also known as 2-methyl-6-solanesylplastoquinol and all-trans-nonaprenyl diphosphate as solanesyl diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904832 biolink:NamedThing negative regulation of removal of superoxide radicals Any process that stops, prevents or reduces the frequency, rate or extent of removal of superoxide radicals. tmpzr1t_l9r_go_relaxed.owl inhibition of removal of superoxide radicals|inhibition of removal of oxygen free radicals|downregulation of removal of O2-|downregulation of removal of superoxide radicals|negative regulation of removal of oxygen free radicals|inhibition of cellular detoxification of superoxide radicals|down regulation of cellular detoxification of superoxide radicals|down-regulation of removal of superoxide radicals|down regulation of removal of superoxide radicals|downregulation of removal of oxygen free radicals|downregulation of cellular detoxification of superoxide radicals|down-regulation of removal of oxygen free radicals|negative regulation of removal of O2-|down-regulation of cellular detoxification of superoxide radicals|inhibition of removal of O2-|down regulation of removal of oxygen free radicals|negative regulation of cellular detoxification of superoxide radicals|down regulation of removal of O2-|down-regulation of removal of O2- rph 2015-11-24T15:30:18Z biological_process owl:Class GO:1901410 biolink:NamedThing regulation of tetrapyrrole biosynthetic process from glutamate Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process from glutamate. tmpzr1t_l9r_go_relaxed.owl regulation of tetrapyrrole formation from glutamate|regulation of tetrapyrrole biosynthesis from glutamate|regulation of tetrapyrrole anabolism from glutamate|regulation of tetrapyrrole synthesis from glutamate tt 2012-10-01T16:20:56Z biological_process owl:Class GO:2001022 biolink:NamedThing positive regulation of response to DNA damage stimulus Any process that activates or increases the frequency, rate or extent of response to DNA damage stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of response to genotoxic stress|positive regulation of cellular response to DNA damage stimulus|positive regulation of cellular DNA damage response|positive regulation of DNA damage response yaf 2011-08-19T10:20:33Z biological_process owl:Class GO:1903118 biolink:NamedThing urate homeostasis Any process involved in the maintenance of an internal steady state of urate within an organism or cell. tmpzr1t_l9r_go_relaxed.owl dph 2014-06-13T14:54:51Z biological_process owl:Class GO:0140221 biolink:NamedThing pathogen-containing vacuole membrane Host-derived membrane of a pathogen-containing vacuole. tmpzr1t_l9r_go_relaxed.owl pathogen inclusion membrane|pathogen-containing compartment membrane https://github.com/geneontology/go-ontology/issues/15580 pg 2018-04-20T06:18:25Z cellular_component owl:Class GO:0034981 biolink:NamedThing FHL3-CREB complex A protein complex that contains CREB and FHL3, and is involved in transcriptional regulation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047673 biolink:NamedThing anthranilate N-malonyltransferase activity Catalysis of the reaction: anthranilate + malonyl-CoA = N-malonylanthranilate + CoA. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:anthranilate N-malonyltransferase activity KEGG_REACTION:R00989|EC:2.3.1.113|MetaCyc:ANTHRANILATE-N-MALONYLTRANSFERASE-RXN|RHEA:17557 molecular_function owl:Class GO:0050735 biolink:NamedThing N-malonyltransferase activity Catalysis of the transfer of a malonyl group to a nitrogen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007616 biolink:NamedThing long-term memory The memory process that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Long-term_memory biological_process owl:Class GO:0007613 biolink:NamedThing memory The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Memory biological_process owl:Class GO:0051668 biolink:NamedThing localization within membrane Any process in which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a membrane. tmpzr1t_l9r_go_relaxed.owl localisation within membrane|establishment and maintenance of localization in membrane|positioning within membrane|localization to membrane|establishment and maintenance of position in membrane biological_process owl:Class GO:0061871 biolink:NamedThing negative regulation of hepatic stellate cell migration Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:20:51Z biological_process owl:Class GO:0060762 biolink:NamedThing regulation of branching involved in mammary gland duct morphogenesis Any process that modulates the rate, frequency, or extent of branching involved in mammary gland duct morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T05:20:33Z biological_process owl:Class GO:0090377 biolink:NamedThing seed trichome initiation The process in which the developmental fate of an epidermal cell becomes restricted such that it will develop into a seed trichome, causing a change in the orientation of cell division in the ovule epidermis at or just before anthesis. tmpzr1t_l9r_go_relaxed.owl seed trichome fate commitment These processes continue up to 3 days post-anthesis (DPA) in Gossypium spp. tb 2010-09-15T02:13:59Z biological_process owl:Class GO:1901397 biolink:NamedThing positive regulation of transforming growth factor beta2 activation Any process that activates or increases the frequency, rate or extent of transforming growth factor beta2 activation. tmpzr1t_l9r_go_relaxed.owl upregulation of TGF-beta 2 activation|up-regulation of TGF-beta 2 activation|up regulation of TGF-beta 2 activation|activation of transforming growth factor beta2 activation|upregulation of transforming growth factor beta2 activation|activation of TGFbeta 2 activation|positive regulation of TGFB2 activation|up-regulation of TGFB2 activation|upregulation of TGFbeta 2 activation|activation of TGFB2 activation|up-regulation of transforming growth factor beta2 activation|up-regulation of TGFbeta 2 activation|positive regulation of TGFbeta 2 activation|up regulation of transforming growth factor beta2 activation|up regulation of TGFbeta 2 activation|upregulation of TGFB2 activation|activation of TGF-beta 2 activation|positive regulation of TGF-beta 2 activation|up regulation of TGFB2 activation bf 2012-10-01T10:48:15Z biological_process owl:Class GO:1903557 biolink:NamedThing positive regulation of tumor necrosis factor superfamily cytokine production Any process that activates or increases the frequency, rate or extent of tumor necrosis factor superfamily cytokine production. tmpzr1t_l9r_go_relaxed.owl up regulation of tumor necrosis factor superfamily cytokine production|up-regulation of tumor necrosis factor superfamily cytokine production|activation of TNFSF cytokine production|up-regulation of TNFSF cytokine production|activation of TNF superfamily production|upregulation of tumor necrosis factor superfamily cytokine production|positive regulation of TNF superfamily production|upregulation of TNF superfamily production|up-regulation of TNF superfamily production|upregulation of TNFSF cytokine production|up regulation of TNFSF cytokine production|positive regulation of TNFSF cytokine production|activation of tumor necrosis factor superfamily cytokine production|up regulation of TNF superfamily production pga 2014-10-21T10:26:23Z biological_process owl:Class GO:0061179 biolink:NamedThing negative regulation of insulin secretion involved in cellular response to glucose stimulus Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose. tmpzr1t_l9r_go_relaxed.owl negative regulation of insulin secretion involved in cellular response to glucose|negative regulation of insulin secretion in response to glucose dph 2010-07-13T09:41:46Z biological_process owl:Class GO:0032877 biolink:NamedThing positive regulation of DNA endoreduplication Any process that activates or increases the frequency, rate or extent of DNA endoreduplication. tmpzr1t_l9r_go_relaxed.owl up regulation of DNA endoreduplication|upregulation of DNA endoreduplication|activation of DNA endoreduplication|up-regulation of DNA endoreduplication|positive regulation of DNA re-duplication|positive regulation of DNA endoreplication|stimulation of DNA endoreduplication biological_process owl:Class GO:0001931 biolink:NamedThing uropod A membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively. tmpzr1t_l9r_go_relaxed.owl retractile pole|distal pole complex|uropodium cellular_component owl:Class GO:1905220 biolink:NamedThing negative regulation of platelet formation Any process that stops, prevents or reduces the frequency, rate or extent of platelet formation. tmpzr1t_l9r_go_relaxed.owl downregulation of platelet formation|down regulation of platelet extrusion|inhibition of platelet extrusion|downregulation of platelet extrusion|inhibition of platelet formation|down-regulation of platelet extrusion|down regulation of platelet formation|down-regulation of platelet formation|negative regulation of platelet extrusion sl 2016-06-06T22:15:54Z biological_process owl:Class GO:0047831 biolink:NamedThing D-ornithine 4,5-aminomutase activity Catalysis of the reaction: D-ornithine = (2R,4S)-2,4-diaminopentanoate. tmpzr1t_l9r_go_relaxed.owl D-alpha-ornithine 5,4-aminomutase activity|D-ornithine aminomutase activity EC:5.4.3.5|KEGG_REACTION:R02461|RHEA:14893|MetaCyc:ORNMUTST-RXN molecular_function owl:Class GO:0062237 biolink:NamedThing protein localization to postsynapse Any process in which a protein is transported to, and/or maintained at the postsynapse, the part of a synapse that is part of the post-synaptic cell. tmpzr1t_l9r_go_relaxed.owl dph 2020-04-20T13:58:43Z biological_process owl:Class GO:0035418 biolink:NamedThing protein localization to synapse Any process in which a protein is transported to, and/or maintained at the synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell. tmpzr1t_l9r_go_relaxed.owl protein localisation to synapse bf 2010-03-29T10:58:53Z biological_process owl:Class GO:0098687 biolink:NamedThing chromosomal region Any subdivision of a chromosome along its length. tmpzr1t_l9r_go_relaxed.owl chromosome region Chromosomal regions include parts that are not part of the chromatin. Examples include the kinetochore. cellular_component owl:Class GO:0047963 biolink:NamedThing glycine N-choloyltransferase activity Catalysis of the reaction: choloyl-CoA + glycine = CoA + glycocholate. tmpzr1t_l9r_go_relaxed.owl cholyl-CoA glycine-taurine N-acyltransferase activity|cholyl-CoA:taurine N-acyltransferase activity|choloyl-CoA:glycine N-choloyltransferase activity|bile acid-CoA:amino acid N-acyltransferase activity|amino acid N-choloyltransferase activity|BAT activity|glycine--taurine N-acyltransferase activity|BACAT activity RHEA:14001|MetaCyc:GLYCINE-N-CHOLOYLTRANSFERASE-RXN|EC:2.3.1.65 molecular_function owl:Class GO:0052615 biolink:NamedThing ent-kaurene oxidase activity Catalysis of the reaction: H+ + NADPH + ent-kaur-16-ene + oxygen = H2O + NADP+ + ent-kaur-16-en-19-ol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:1.14.13.78-RXN|RHEA:32323|EC:1.14.14.86 molecular_function owl:Class GO:0102840 biolink:NamedThing 1-18:2-2-16:3-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-16:3-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:3-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8301|EC:1.14.19.35 molecular_function owl:Class GO:0007158 biolink:NamedThing neuron cell-cell adhesion The attachment of a neuron to another cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl neuron adhesion|neuronal cell adhesion biological_process owl:Class GO:0006186 biolink:NamedThing dGDP phosphorylation The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009216 biolink:NamedThing purine deoxyribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside triphosphate biosynthesis|purine deoxyribonucleoside triphosphate synthesis|purine deoxyribonucleoside triphosphate formation|purine deoxyribonucleoside triphosphate anabolism biological_process owl:Class GO:0006864 biolink:NamedThing pyrimidine nucleotide transport The directed movement of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032104 biolink:NamedThing regulation of response to extracellular stimulus Any process that modulates the frequency, rate or extent of a response to an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120325 biolink:NamedThing NuRD complex binding Binding to a NuRD complex. tmpzr1t_l9r_go_relaxed.owl krc 2021-08-03T21:15:31Z molecular_function owl:Class GO:0032389 biolink:NamedThing MutLalpha complex A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MLH1 and PMS2. tmpzr1t_l9r_go_relaxed.owl MLH1/PMS2 complex|MutL-alpha complex|MMR complex cellular_component owl:Class GO:0036490 biolink:NamedThing regulation of translation in response to endoplasmic reticulum stress Modulation of the frequency, rate or extent of translation as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl regulation of translation in response to ER stress bf 2015-02-05T09:50:11Z biological_process owl:Class GO:0052164 biolink:NamedThing symbiont defense to host-produced reactive oxygen species Any process in which a symbiont modulates the frequency, rate or extent of the production of reactive oxygen species as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related host oxidative burst|modulation by organism of defense-related host reactive oxidative species production|evasion or tolerance of host-produced ROIs|evasion or tolerance by symbiont of reactive oxygen species produced by other organism involved in symbiotic interaction|evasion or tolerance of host-produced AOS|evasion or tolerance by organism of reactive oxygen species produced by other organism involved in symbiotic interaction|evasion or tolerance of host-produced reactive oxygen intermediates|response to defense-related host reactive oxygen species production|modulation by organism of defense-related reactive oxygen species production in other organism involved in symbiotic interaction|modulation by organism of defense-related host active oxygen species production|evasion or tolerance of defense-related host respiratory burst|evasion by symbiont of cellular damage caused by host oxidative burst|response to defense-related reactive oxygen species production by other organism involved in symbiotic interaction|modulation by symbiont of defense-related host reactive oxygen species production|evasion or tolerance by organism of host-produced reactive oxygen species|evasion or tolerance of host-produced active oxygen species|modulation by organism of defense-related host ROI production|modulation by organism of defense-related host AOS production|modulation by organism of defense-related host ROS production|evasion or tolerance of host-produced ROS|modulation by organism of defense-related host metabolic burst|modulation by organism of defense-related host respiratory burst|evasion or tolerance of defense-related host oxidative burst|evasion or tolerance of reactive oxygen species produced by host|modulation by organism of defense-related host reactive oxygen intermediate production|evasion or tolerance of defense-related host metabolic burst|evasion or tolerance by organism of reactive oxygen species produced during host defense response|evasion or tolerance by symbiont of host-produced reactive oxygen species https://github.com/geneontology/go-ontology/issues/18697 GO:0052567|GO:0052550|GO:0052303|GO:0052385|GO:0052059 biological_process owl:Class GO:0042783 biolink:NamedThing evasion of host immune response A process by which an organism avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl evasion or tolerance of host immune response|active evasion of host immune response|mitigation of host immune response|active immune evasion|passive evasion of host immune response|immune evasion|passive immune evasion|passive evasion of immune response of other organism involved in symbiotic interaction|active evasion of immune response of other organism involved in symbiotic interaction https://github.com/geneontology/go-ontology/issues/17894|https://github.com/geneontology/go-ontology/issues/18357 GO:0051805|GO:0051810|GO:0051809|GO:0020012|GO:0042782 biological_process owl:Class GO:0075209 biolink:NamedThing induction by symbiont of host cAMP-mediated signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of cAMP-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host cAMP-mediated signal transduction|positive regulation by symbiont of host cAMP-mediated signaling Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by host of symbiont cAMP-mediated signal transduction ; GO:0075206". biological_process owl:Class GO:0075208 biolink:NamedThing modulation by symbiont of host cAMP-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of cAMP-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host cAMP-mediated signaling Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont cAMP-mediated signal transduction ; GO:0075205". biological_process owl:Class GO:0003998 biolink:NamedThing acylphosphatase activity Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate. tmpzr1t_l9r_go_relaxed.owl acetylphosphatase activity|acylphosphate phosphohydrolase activity|Ho 1-3|acetic phosphatase activity|GP 1-3|1,3-diphosphoglycerate phosphatase activity EC:3.6.1.7|RHEA:14965|MetaCyc:ACYLPHOSPHATASE-RXN molecular_function owl:Class GO:0002846 biolink:NamedThing regulation of T cell tolerance induction to tumor cell Any process that modulates the frequency, rate, or extent of T cell tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046456 biolink:NamedThing icosanoid biosynthetic process The chemical reactions and pathways resulting in the formation of icosanoids, any of a group of C20 polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl icosanoid synthesis|eoxin biosynthesis|eicosanoid biosynthetic process|eicosanoid biosynthesis|icosanoid formation|eoxin synthesis|icosanoid biosynthesis|icosanoid anabolism https://github.com/geneontology/go-ontology/issues/18848 Wikipedia:Eicosanoid biological_process owl:Class GO:0006690 biolink:NamedThing icosanoid metabolic process The chemical reactions and pathways involving icosanoids, any of a group of C20 polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl icosanoid metabolism|eicosanoid metabolism|eicosanoid metabolic process biological_process owl:Class GO:1903117 biolink:NamedThing regulation of actin filament organization involved in cytokinetic actomyosin contractile ring assembly Any process that modulates the frequency, rate or extent of actin filament organization involved in cytokinetic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament organization of contractile ring assembly|regulation of actin filament organisation of cytokinesis, actomyosin contractile ring formation|regulation of actin filament organisation of constriction ring assembly|regulation of actin filament organisation of cytokinesis, actomyosin ring formation|regulation of regulation of actin filament localization of contractile ring assembly|regulation of regulation of actin filament localization of constriction ring assembly|regulation of actin filament organization of cytokinesis, actomyosin ring formation|regulation of actin filament organization of constriction ring assembly|regulation of regulation of actin filament localization of cytokinesis, contractile ring assembly|regulation of regulation of actin filament localization of cytokinesis, actomyosin contractile ring assembly|regulation of actin filament organisation of cytokinesis, contractile ring assembly|regulation of actin filament organization of cytokinesis, actomyosin ring biosynthesis|regulation of actin filament organisation of contractile ring assembly|regulation of actin filament organization of cytokinesis, contractile ring assembly|regulation of actin filament organisation of cytokinesis, actomyosin ring biosynthesis|regulation of regulation of actin filament localization of cytokinesis, actomyosin contractile ring formation|regulation of actin filament organisation of cytokinesis, actomyosin contractile ring assembly|regulation of regulation of actin filament localization of cytokinesis, actomyosin ring formation|regulation of regulation of actin filament localization of cytokinesis, actomyosin ring biosynthesis|regulation of actin filament organization of cytokinesis, actomyosin contractile ring formation|regulation of actin filament organization of cytokinesis, actomyosin contractile ring assembly al 2014-06-12T16:57:17Z biological_process owl:Class GO:0044781 biolink:NamedThing bacterial-type flagellum organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility. tmpzr1t_l9r_go_relaxed.owl jl 2013-03-27T15:07:00Z biological_process owl:Class GO:0015882 biolink:NamedThing L-ascorbic acid transmembrane transport The process in which L-ascorbic acid is transported across a lipid bilayer, from one side of a membrane to the other. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species. tmpzr1t_l9r_go_relaxed.owl L-ascorbate transport|L-ascorbic acid transport|vitamin C transport biological_process owl:Class GO:0035860 biolink:NamedThing glial cell-derived neurotrophic factor receptor signaling pathway The series of molecular signals generated as a consequence of a glial cell-derived neurotrophic factor receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl glial cell derived neurotrophic factor receptor signaling pathway|GDNF receptor signaling pathway|glial cell-derived neurotrophic factor receptor signalling pathway|glial cell line-derived neurotrophic factor receptor signalling pathway bf 2011-05-17T11:01:33Z biological_process owl:Class GO:0032129 biolink:NamedThing histone deacetylase activity (H3-K9 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 9) + H2O = histone H3 L-lysine (position 9) + acetate. This reaction represents the removal of an acetyl group from lysine at position 9 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046716 biolink:NamedThing muscle cell cellular homeostasis The cellular homeostatic process that preserves a muscle cell in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl muscle homeostasis|muscle fiber maintenance biological_process owl:Class GO:0019001 biolink:NamedThing guanyl nucleotide binding Binding to a guanyl nucleotide, consisting of guanosine esterified with (ortho)phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-156909 molecular_function owl:Class GO:0048601 biolink:NamedThing oocyte morphogenesis The process in which the structures of an oocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of an oocyte. tmpzr1t_l9r_go_relaxed.owl oocyte morphogenesis during differentiation biological_process owl:Class GO:0001046 biolink:NamedThing core promoter sequence-specific DNA binding Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. tmpzr1t_l9r_go_relaxed.owl eubacterial-type RNA polymerase core promoter sequence-specific DNA binding|core promoter binding|bacterial-type RNA polymerase core promoter sequence-specific DNA binding https://github.com/geneontology/go-ontology/issues/19312 krc 2010-08-25T04:17:44Z GO:0001047|GO:0000985 molecular_function owl:Class GO:0035769 biolink:NamedThing B cell chemotaxis across high endothelial venule The movement of a B cell to cross a high endothelial venule in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl B-cell chemotaxis across high endothelial venule bf 2011-04-01T10:48:59Z biological_process owl:Class GO:0002518 biolink:NamedThing lymphocyte chemotaxis across high endothelial venule The movement of a lymphocyte to cross a high endothelial venule in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070730 biolink:NamedThing cAMP transport The directed movement of cyclic AMP (cAMP), into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl cyclic AMP transport mah 2009-06-17T03:53:45Z biological_process owl:Class GO:0021925 biolink:NamedThing cerebellar Purkinje cell precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to Purkinje cells. A Purkinje cell is an inhibitory GABAergic neuron found in the cerebellar cortex that projects to the deep cerebellar nuclei and brain stem. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062203 biolink:NamedThing Viteagnusin D synthase activity Catalysis of the reaction: H2O + peregrinol diphosphate = diphosphate + viteagnusin D. tmpzr1t_l9r_go_relaxed.owl RHEA:62180 dph 2020-01-02T18:25:47Z molecular_function owl:Class GO:0120258 biolink:NamedThing peptidyl-threonine O-acetylation The acetylation of peptidyl-threonine to form peptidyl-O-acetyl-L-threonine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19957 RESID:AA0364 krc 2020-09-08T18:07:44Z biological_process owl:Class GO:0043978 biolink:NamedThing histone H2A-K9 acetylation The modification of histone H2A by the addition of an acetyl group to a lysine residue at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2A acetylation at K9 biological_process owl:Class GO:0035912 biolink:NamedThing dorsal aorta morphogenesis The process in which the anatomical structures of the dorsal aorta are generated and organized. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:22:14Z biological_process owl:Class GO:0035909 biolink:NamedThing aorta morphogenesis The process in which the anatomical structures of an aorta are generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:11:11Z biological_process owl:Class GO:0010885 biolink:NamedThing regulation of cholesterol storage Any process that modulates the rate or extent of cholesterol storage. Cholesterol storage is the accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032719 biolink:NamedThing negative regulation of TRAIL production Any process that stops, prevents, or reduces the frequency, rate, or extent of TRAIL production. tmpzr1t_l9r_go_relaxed.owl negative regulation of TRAIL biosynthetic process|down-regulation of TRAIL production|inhibition of TRAIL production|down regulation of TRAIL production|downregulation of TRAIL production GO:0045555 biological_process owl:Class GO:0045696 biolink:NamedThing positive regulation of embryo sac egg cell differentiation Any process that activates or increases the frequency, rate or extent of embryo sac egg cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of female gametophyte egg cell differentiation|activation of female gametophyte egg cell differentiation|stimulation of female gametophyte egg cell differentiation|up regulation of female gametophyte egg cell differentiation|up-regulation of female gametophyte egg cell differentiation|positive regulation of female gametophyte egg cell differentiation biological_process owl:Class GO:0033135 biolink:NamedThing regulation of peptidyl-serine phosphorylation Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043491 biolink:NamedThing protein kinase B signaling A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B (also called AKT), which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl PKB signaling cascade|PKB signalling cascade|AKT signaling|AKT signalling cascade|PKB signal transduction|protein kinase B signaling cascade|AKT signal transduction|protein kinase B signalling cascade|PKB signaling|AKT signaling cascade|protein kinase B signal transduction biological_process owl:Class GO:0050942 biolink:NamedThing positive regulation of pigment cell differentiation Any process that activates or increases the frequency, rate or extent of pigment cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of pigment cell differentiation|stimulation of pigment cell differentiation|upregulation of pigment cell differentiation|up regulation of pigment cell differentiation|up-regulation of pigment cell differentiation biological_process owl:Class GO:0035358 biolink:NamedThing regulation of peroxisome proliferator activated receptor signaling pathway Any process that modulates the frequency, rate or extent of the peroxisome proliferator activated receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of PPAR signaling pathway|regulation of peroxisome proliferator-activated receptor signaling pathway|regulation of peroxisome proliferator activated receptor signalling pathway bf 2010-03-05T10:39:37Z biological_process owl:Class GO:1903625 biolink:NamedThing negative regulation of DNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of DNA catabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA breakdown|down regulation of DNA catabolism|down-regulation of DNA breakdown|down regulation of DNA catabolic process|negative regulation of DNA breakdown|downregulation of DNA catabolic process|down regulation of DNA degradation|downregulation of DNA degradation|inhibition of DNA catabolic process|down-regulation of DNA degradation|inhibition of DNA catabolism|negative regulation of DNA catabolism|down regulation of DNA breakdown|negative regulation of DNA degradation|inhibition of DNA degradation|down-regulation of DNA catabolic process|downregulation of DNA breakdown|down-regulation of DNA catabolism|downregulation of DNA catabolism sl 2014-11-19T22:36:43Z biological_process owl:Class GO:0052160 biolink:NamedThing modulation by symbiont of host systemic acquired resistance Any process in which a symbiont modulates the frequency, rate or extent of systemic acquired resistance in the host organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of systemic acquired resistance in other organism involved in symbiotic interaction|modulation by symbiont of systemic acquired resistance in host GO:0052299 biological_process owl:Class GO:0052553 biolink:NamedThing modulation by symbiont of host immune response Any process in which a symbiont modulates the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of immune response of other organism involved in symbiotic interaction GO:0052552 biological_process owl:Class GO:0160006 biolink:NamedThing Fc receptor-mediated immune complex endocytosis An endocytosis process mediated by the Fc receptor for the purpose of delivery of antigen-bound immunoglobulin to an intracellular compartment where the antigen can be processed and loaded onto MHC molecules. This process selectively targets antigens for presentation by MHC class I or MHC class II. tmpzr1t_l9r_go_relaxed.owl Ig-complexed antigen endocytosis via Fc receptor|Fc receptor-mediated immune complex internalization|antigen-antibody immune complex uptake via Fc receptor rynl 2021-11-05T23:38:29Z biological_process owl:Class GO:0150117 biolink:NamedThing positive regulation of cell-substrate junction organization Any process that activates or increases the frequency, rate or extent of cell-substrate junction organization. tmpzr1t_l9r_go_relaxed.owl bc 2019-11-14T12:15:07Z biological_process owl:Class GO:0150116 biolink:NamedThing regulation of cell-substrate junction organization Any process that modulates the frequency, rate or extent of cell-substrate junction organization. tmpzr1t_l9r_go_relaxed.owl bc 2019-11-14T12:12:27Z biological_process owl:Class GO:0042690 biolink:NamedThing negative regulation of crystal cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of crystal cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of crystal cell differentiation|down regulation of crystal cell differentiation|down-regulation of crystal cell differentiation|downregulation of crystal cell differentiation biological_process owl:Class GO:1990683 biolink:NamedThing DNA double-strand break attachment to nuclear envelope A process in which the DNA double-strand breaks are attached to the inner surface of the nuclear envelope proximal to the spindle pole body, or iMTOCs. tmpzr1t_l9r_go_relaxed.owl vw 2015-03-10T16:36:21Z biological_process owl:Class GO:1902048 biolink:NamedThing neosartoricin metabolic process The chemical reactions and pathways involving neosartoricin. tmpzr1t_l9r_go_relaxed.owl neosartoricin metabolism di 2013-04-08T20:31:02Z biological_process owl:Class GO:1903175 biolink:NamedThing fatty alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of fatty alcohol. tmpzr1t_l9r_go_relaxed.owl fatty alcohol anabolism|fatty alcohol synthesis|fatty alcohol formation|fatty alcohol biosynthesis tt 2014-07-14T01:51:54Z biological_process owl:Class GO:2000429 biolink:NamedThing negative regulation of neutrophil aggregation Any process that stops, prevents or reduces the frequency, rate or extent of neutrophil aggregation. tmpzr1t_l9r_go_relaxed.owl negative regulation of neutrophil leucocyte aggregation|negative regulation of neutrophilic leukocyte aggregation|negative regulation of neutrocyte aggregation ebc 2011-02-28T05:19:28Z biological_process owl:Class GO:0046648 biolink:NamedThing positive regulation of gamma-delta T cell proliferation Any process that activates or increases the frequency, rate or extent of gamma-delta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of gamma-delta T cell proliferation|up regulation of gamma-delta T cell proliferation|activation of gamma-delta T cell proliferation|positive regulation of gamma-delta T-cell proliferation|stimulation of gamma-delta T cell proliferation|up-regulation of gamma-delta T cell proliferation|positive regulation of gamma-delta T lymphocyte proliferation|positive regulation of gamma-delta T-lymphocyte proliferation biological_process owl:Class GO:0033212 biolink:NamedThing iron import into cell The directed movement of iron ions from outside of a cell into the cytoplasmic compartment. This may occur via transport across the plasma membrane or via endocytosis. tmpzr1t_l9r_go_relaxed.owl ferrous ion import|iron assimilation|ferrous iron import|ferrous iron uptake mah 2009-05-01T04:19:14Z GO:0070627 biological_process owl:Class GO:0044321 biolink:NamedThing response to leptin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leptin stimulus. Leptin is a hormone manufactured primarily in the adipocytes of white adipose tissue, and the level of circulating leptin is directly proportional to the total amount of fat in the body. It plays a key role in regulating energy intake and energy expenditure, including appetite and metabolism]. tmpzr1t_l9r_go_relaxed.owl response to leptin stimulus jl 2010-07-14T02:31:20Z biological_process owl:Class GO:0102700 biolink:NamedThing alpha-thujene synthase activity Catalysis of the reaction: geranyl diphosphate(3-) <=> alpha-thujene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-5105 molecular_function owl:Class GO:1900781 biolink:NamedThing fumiquinazoline C biosynthetic process The chemical reactions and pathways resulting in the formation of fumiquinazoline C. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline C anabolism|fumiquinazoline C formation|fumiquinazoline C synthesis|fumiquinazoline C biosynthesis di 2012-06-04T09:30:58Z biological_process owl:Class GO:0032658 biolink:NamedThing regulation of interleukin-15 production Any process that modulates the frequency, rate, or extent of interleukin-15 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-15 biosynthetic process|regulation of IL-15 production GO:0045372 biological_process owl:Class GO:0022021 biolink:NamedThing caudal ganglionic eminence cell proliferation The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022012 biolink:NamedThing subpallium cell proliferation in forebrain The multiplication or reproduction of subpallium cells in the forebrain, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016697 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl EC:1.12.2.- GO:0016698 molecular_function owl:Class GO:1901015 biolink:NamedThing 3alpha(S)-strictosidine biosynthetic process The chemical reactions and pathways resulting in the formation of 3alpha(S)-strictosidine. tmpzr1t_l9r_go_relaxed.owl 3alpha(S)-strictosidine synthesis|3alpha(S)-strictosidine formation|3alpha(S)-strictosidine biosynthesis|3alpha(S)-strictosidine anabolism yaf 2012-06-15T10:47:26Z biological_process owl:Class GO:0031210 biolink:NamedThing phosphatidylcholine binding Binding to a phosphatidylcholine, a glycophospholipid in which a phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033230 biolink:NamedThing ABC-type cysteine transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cysteine(out/in) = ADP + phosphate + cysteine(in/out). tmpzr1t_l9r_go_relaxed.owl cysteine-exporting ATPase activity|ATP-dependent cysteine transporter activity|cysteine-transporting ATPase activity|ATPase-coupled cysteine transporter activity|ATPase-coupled cysteine transmembrane transporter activity|cysteine exporter https://github.com/geneontology/go-ontology/issues/17289 GO:0032519 molecular_function owl:Class GO:0080033 biolink:NamedThing response to nitrite Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrite stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051460 biolink:NamedThing negative regulation of corticotropin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of corticotropic hormone from a cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of adrenocorticotropin secretion|negative regulation of ACTH secretion|down regulation of adrenocorticotropin secretion|negative regulation of corticotropic hormone secretion|negative regulation of adrenotropin secretion|downregulation of adrenocorticotropin secretion|inhibition of adrenocorticotropin secretion|negative regulation of adrenocorticotropic hormone secretion|negative regulation of adrenotropic hormone secretion|negative regulation of adrenocorticotropin secretion biological_process owl:Class GO:1905367 biolink:NamedThing positive regulation of intralumenal vesicle formation Any process that activates or increases the frequency, rate or extent of intralumenal vesicle formation. tmpzr1t_l9r_go_relaxed.owl activation of endosome membrane budding|upregulation of endosome membrane budding|up-regulation of intralumenal vesicle formation|upregulation of intralumenal vesicle formation|up regulation of endosome membrane budding|positive regulation of endosome membrane budding|up-regulation of endosome membrane budding|up regulation of intralumenal vesicle formation|activation of intralumenal vesicle formation bc 2016-08-16T12:00:16Z biological_process owl:Class GO:0000773 biolink:NamedThing phosphatidyl-N-methylethanolamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidyl-N-methylethanolamine = S-adenosyl-L-homocysteine + phosphatidyl-N-dimethylethanolamine. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine methyltransferase I|S-adenosyl-L-methionine:phosphatidyl-N-methylethanolamine N-methyltransferase activity|phosphatidyl-N-monomethylethanolamine methyltransferase activity|phosphatidylmonomethylethanolamine methyltransferase activity|phospholipid methyltransferase activity|phosphatidyl-N-methylethanolamine methyltransferase activity|PLMT|methyltransferase II RHEA:32735|MetaCyc:2.1.1.71-RXN|EC:2.1.1.71 molecular_function owl:Class GO:0001661 biolink:NamedThing conditioned taste aversion A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Conditioned_taste_aversion|Wikipedia:Taste_aversion biological_process owl:Class GO:0008306 biolink:NamedThing associative learning Learning by associating a stimulus (the cause) with a particular outcome (the effect). tmpzr1t_l9r_go_relaxed.owl conditional learning|classical conditioning|conditional response|Pavlovian conditioning Wikipedia:Learning#Associative_learning biological_process owl:Class GO:0009408 biolink:NamedThing response to heat Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl response to heat shock GO:0006951 biological_process owl:Class GO:0046307 biolink:NamedThing Z-phenylacetaldoxime biosynthetic process The chemical reactions and pathways resulting in the formation of Z-phenylacetaldoxime, a member of the glucosinolate group of compounds. tmpzr1t_l9r_go_relaxed.owl Z-phenylacetaldoxime formation|Z-phenylacetaldoxime anabolism|Z-phenylacetaldoxime biosynthesis|Z-phenylacetaldoxime synthesis biological_process owl:Class GO:0001907 biolink:NamedThing killing by symbiont of host cells Any process mediated by an organism that results in the death of cells in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pathogenesis biological_process owl:Class GO:0003032 biolink:NamedThing detection of oxygen The series of events in which an oxygen stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045633 biolink:NamedThing positive regulation of mechanoreceptor differentiation Any process that activates or increases the frequency, rate or extent of mechanoreceptor differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of mechanoreceptor differentiation|activation of mechanoreceptor differentiation|stimulation of mechanoreceptor differentiation|up-regulation of mechanoreceptor differentiation|up regulation of mechanoreceptor differentiation biological_process owl:Class GO:0032814 biolink:NamedThing regulation of natural killer cell activation Any process that modulates the frequency, rate or extent of natural killer cell activation. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell activation biological_process owl:Class GO:0019671 biolink:NamedThing glutamate catabolic process via mesaconate and citramalate The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate via the intermediates mesaconate and S-citramalate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glutamate fermentation via mesaconate and citramalate MetaCyc:GLUDEG-II-PWY|MetaCyc:PWY-5087|MetaCyc:PWY-5088 biological_process owl:Class GO:0010951 biolink:NamedThing negative regulation of endopeptidase activity Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T11:47:01Z biological_process owl:Class GO:0051779 biolink:NamedThing gibberellin 12-aldehyde oxidase activity Catalysis of the reaction: gibberellin 12-aldehyde + NADPH + H+ + O2 = gibberellin 12 + NADP+ + H2O. This is the third of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12). tmpzr1t_l9r_go_relaxed.owl GA12-aldehyde oxidase activity RHEA:22700|MetaCyc:RXN1F-161 Note that the enzyme ent-kaurenoate oxidase also catalyzes the reactions represented by the molecular function terms 'ent-kaurenoate oxidase activity ; GO:0051777' and 'ent-7-alpha-hydroxykaurenoate oxidase activity ; GO:0051778'. molecular_function owl:Class GO:0097221 biolink:NamedThing M/G1 phase-specific MADS box-forkhead transcription factor complex A protein complex that contains a MADS-box protein and two forkhead domain proteins, and binds to and regulates transcription from promoters of genes transcribed during the M/G1 transition of the cell cycle. In Schizosaccharomyces pombe, the complex contains the MADS-box protein Mbx1 and two forkhead proteins, Sep1 and Fkh2. tmpzr1t_l9r_go_relaxed.owl pombe cell cycle box binding factor complex|PCB binding factor complex|PBF complex|PBF transcription complex pr 2012-01-18T08:18:27Z cellular_component owl:Class GO:0044879 biolink:NamedThing mitotic morphogenesis checkpoint signaling A signaling process that contributes to a mitotic cell cycle checkpoint which delays mitotic onset in response to perturbations that affect cell shape via the actin cytoskeleton, septin organization, small cell size, and/or the extent of membrane growth. tmpzr1t_l9r_go_relaxed.owl signaling pathway involved in septin checkpoint|septin checkpoint|signalling pathway involved in septin checkpoint|signaling pathway involved in morphogenesis checkpoint|signalling pathway involved in morphogenesis checkpoint|signal transduction involved in septin checkpoint|signalling cascade involved in septin checkpoint|signaling cascade involved in septin checkpoint|signaling cascade involved in morphogenesis checkpoint|morphogenesis checkpoint|signal transduction involved in morphogenesis checkpoint|signalling cascade involved in morphogenesis checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2015-01-13T16:03:07Z GO:1903822 biological_process owl:Class GO:0071217 biolink:NamedThing cellular response to external biotic stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:14:27Z biological_process owl:Class GO:0070879 biolink:NamedThing fungal-type cell wall beta-glucan metabolic process The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall beta-glucan metabolism mah 2009-08-21T02:46:09Z biological_process owl:Class GO:0044640 biolink:NamedThing envenomation resulting in negative regulation of complement activation, lectin pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant negative regulation of complement activation via the lectin pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:56:30Z biological_process owl:Class GO:0044639 biolink:NamedThing envenomation resulting in modulation of complement activation, lectin pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation via the lectin pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of complement activation, lectin pathway in other organism jl 2012-07-05T04:53:36Z biological_process owl:Class GO:0010661 biolink:NamedThing positive regulation of muscle cell apoptotic process Any process that increases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl positive regulation of muscle cell apoptosis biological_process owl:Class GO:0019545 biolink:NamedThing arginine catabolic process to succinate The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including succinate. tmpzr1t_l9r_go_relaxed.owl arginine breakdown to succinate|arginine degradation to succinate MetaCyc:ARGDEG-V-PWY|MetaCyc:ARGDEG-III-PWY|MetaCyc:ARGDEG-IV-PWY|MetaCyc:AST-PWY biological_process owl:Class GO:0006527 biolink:NamedThing arginine catabolic process The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl arginine breakdown|arginine degradation|arginine catabolism biological_process owl:Class GO:0061089 biolink:NamedThing negative regulation of sequestering of zinc ion Any process that decreases the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:38:53Z biological_process owl:Class GO:0006056 biolink:NamedThing mannoprotein metabolic process The chemical reactions and pathways involving a mannoprotein, a protein that contains covalently bound mannose residues. tmpzr1t_l9r_go_relaxed.owl mannoprotein metabolism biological_process owl:Class GO:0034408 biolink:NamedThing ascospore wall beta-glucan metabolic process The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall beta-glucan metabolism biological_process owl:Class GO:0010914 biolink:NamedThing positive regulation of sterigmatocystin biosynthetic process Any process that increases the rate, frequency, or extent of sterigmatocystin biosynthesis. Sterigmatocystin biosynthetic processes are the chemical reactions and pathways resulting in the formation of sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905134 biolink:NamedThing positive regulation of meiotic chromosome separation Any process that activates or increases the frequency, rate or extent of meiotic chromosome separation. tmpzr1t_l9r_go_relaxed.owl upregulation of meiotic chromosome resolution|upregulation of chromosome separation during meiosis|up-regulation of chromosome separation during meiosis|activation of meiotic chromosome separation|up regulation of chromosome separation during meiosis|up-regulation of meiotic chromosome resolution|activation of meiotic chromosome resolution|activation of chromosome separation during meiosis|up-regulation of meiotic chromosome separation|upregulation of meiotic chromosome separation|up regulation of meiotic chromosome resolution|positive regulation of meiotic chromosome resolution|up regulation of meiotic chromosome separation|positive regulation of chromosome separation during meiosis dph 2016-04-12T17:46:45Z biological_process owl:Class GO:1905132 biolink:NamedThing regulation of meiotic chromosome separation Any process that modulates the frequency, rate or extent of meiotic chromosome separation. tmpzr1t_l9r_go_relaxed.owl regulation of chromosome separation during meiosis|regulation of meiotic chromosome resolution dph 2016-04-12T17:46:29Z biological_process owl:Class GO:0071599 biolink:NamedThing otic vesicle development The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-04T04:07:17Z biological_process owl:Class GO:0099191 biolink:NamedThing trans-synaptic signaling by BDNF Cell-cell signaling between presynapse and postsynapse mediated by brain-derived neurotrophic factor (BDNF) crossing the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl trans-synaptic signaling by brain-derived neurotrophic factor dos 2017-12-20T15:48:33Z biological_process owl:Class GO:0097565 biolink:NamedThing right middle basal body pair Set of two basal bodies found in Giardia species (trophozoite stage). It comprises the caudal and posteriolateral basal bodies located to the left of the right nucleus of the trophozoite when viewed dorsally. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:14:05Z cellular_component owl:Class GO:0090328 biolink:NamedThing regulation of olfactory learning Any process that modulates the rate, frequency, or extent of olfactory learning. Olfactory learning is any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:37:22Z biological_process owl:Class GO:0018180 biolink:NamedThing protein desulfurization The removal of a sulfur group from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid desulfurization|protein amino acid desulphurization|protein amino acid desulfurisation|protein amino acid desulphurisation biological_process owl:Class GO:0034178 biolink:NamedThing toll-like receptor 13 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 13. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 13 signalling pathway|TLR13 signaling pathway biological_process owl:Class GO:0008399 biolink:NamedThing naphthalene hydroxylase activity Catalysis of the conversion of naphthalene to naphthalene 1,2-oxide. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2F2 molecular_function owl:Class GO:0006050 biolink:NamedThing mannosamine metabolic process The chemical reactions and pathways involving mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins. tmpzr1t_l9r_go_relaxed.owl mannosamine metabolism biological_process owl:Class GO:0099604 biolink:NamedThing ligand-gated calcium channel activity Enables the transmembrane transfer of a calcium ions by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903586 biolink:NamedThing positive regulation of histone deubiquitination Any process that activates or increases the frequency, rate or extent of histone deubiquitination. tmpzr1t_l9r_go_relaxed.owl upregulation of histone deubiquitination|activation of histone deubiquitinylation|upregulation of histone deubiquitinylation|positive regulation of histone deubiquitylation|upregulation of histone deubiquitylation|activation of histone deubiquitination|up-regulation of histone deubiquitylation|activation of histone deubiquitylation|up-regulation of histone deubiquitinylation|up regulation of histone deubiquitinylation|up regulation of histone deubiquitylation|up regulation of histone deubiquitination|positive regulation of histone deubiquitinylation|up-regulation of histone deubiquitination lb 2014-11-03T13:47:44Z biological_process owl:Class GO:0004801 biolink:NamedThing transaldolase activity Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl glycerone transferase activity|dihydroxyacetone transferase activity|dihydroxyacetonetransferase activity|sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity https://github.com/geneontology/go-ontology/issues/20486 Reactome:R-HSA-5659998|RHEA:17053|EC:2.2.1.2|Reactome:R-HSA-163764|MetaCyc:TRANSALDOL-RXN|Reactome:R-HSA-5659989|Reactome:R-HSA-71334 molecular_function owl:Class GO:0042756 biolink:NamedThing drinking behavior The specific behavior of an organism relating to the intake of liquids, especially water. tmpzr1t_l9r_go_relaxed.owl drinking behaviour biological_process owl:Class GO:0016327 biolink:NamedThing apicolateral plasma membrane The apical end of the lateral plasma membrane of epithelial cells. tmpzr1t_l9r_go_relaxed.owl apical lateral plasma membrane cellular_component owl:Class GO:0070672 biolink:NamedThing response to interleukin-15 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-15 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-15 mah 2009-05-29T10:03:09Z biological_process owl:Class GO:0099524 biolink:NamedThing postsynaptic cytosol The region of the cytosol consisting of all cytosol that is part of the postsynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099522 biolink:NamedThing cytosolic region Any (proper) part of the cytosol of a single cell of sufficient size to still be considered cytosol. tmpzr1t_l9r_go_relaxed.owl region of cytosol cellular_component owl:Class GO:1904891 biolink:NamedThing positive regulation of excitatory synapse assembly Any process that activates or increases the frequency, rate or extent of excitatory synapse assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of excitatory synapse formation|up regulation of excitatory synapse assembly|activation of excitatory synapse formation|up-regulation of excitatory synapse formation|positive regulation of excitatory synapse formation|up regulation of excitatory synapse formation|up-regulation of excitatory synapse assembly|activation of excitatory synapse assembly|upregulation of excitatory synapse assembly bf 2016-01-07T14:36:07Z biological_process owl:Class GO:0075342 biolink:NamedThing disruption by symbiont of host cell PML body The breakdown, by the symbiont, of a PML body within a host cell. A PML body is a nuclear body that reacts against SP100 auto-antibodies (PML = promyelocytic leukemia). The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl disassembly by symbiont of host cell PML body|catabolism by symbiont of host cell PML body|disassembly by symbiont of host cell PML nuclear body|disassembly by symbiont of host cell PML NB|degradation by symbiont of host cell PML body|disassembly by symbiont of host cell PML body during symbiotic interaction biological_process owl:Class GO:0052008 biolink:NamedThing disruption by symbiont of host cellular component The chemical reactions and pathways performed by an organism resulting in the breakdown of cellular components of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism of host cellular component by organism|catabolism of host structural constituent by organism|disassembly by symbiont of host cellular component|degradation of host cellular component by organism|disassembly by organism of host cellular component biological_process owl:Class GO:0009810 biolink:NamedThing stilbene metabolic process The chemical reactions and pathways involving stilbenes, a class of polyketides formed from a molecule of cinnamic acid and three molecules of malonyl-CoA. tmpzr1t_l9r_go_relaxed.owl stilbene metabolism biological_process owl:Class GO:0061004 biolink:NamedThing pattern specification involved in kidney development Any developmental process that results in the creation of defined areas or spaces within the kidney to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl kidney pattern formation|pattern formation involved in kidney development|kidney pattern specification dph 2010-01-21T09:05:54Z biological_process owl:Class GO:0034137 biolink:NamedThing positive regulation of toll-like receptor 2 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 2 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 2 signalling pathway|positive regulation of TLR2 signaling pathway biological_process owl:Class GO:0033388 biolink:NamedThing putrescine biosynthetic process from arginine The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine. tmpzr1t_l9r_go_relaxed.owl putrescine synthesis from arginine|putrescine biosynthesis from arginine|putrescine anabolism from arginine|putrescine formation from arginine biological_process owl:Class GO:0004851 biolink:NamedThing uroporphyrin-III C-methyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + uroporphyrin III = 2 S-adenosyl-L-homocysteine + precorrin-2. tmpzr1t_l9r_go_relaxed.owl CysG|S-adenosyl-L-methionine:uroporphyrinogen-III C-methyltransferase activity|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase activity|SUMT activity|SirA|uroporphyrinogen-III methyltransferase activity|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase activity|uroporphyrinogen III methylase activity|uroporphyrinogen-III methylase activity|uroporphyrinogen-III C-methyltransferase activity|adenosylmethionine-uroporphyrinogen III methyltransferase activity|uroporphyrinogen methyltransferase activity|CobA|urogen III methylase activity MetaCyc:UROPORIIIMETHYLTRANSA-RXN|EC:2.1.1.107|RHEA:32459 molecular_function owl:Class GO:0010850 biolink:NamedThing regulation of blood pressure by chemoreceptor signaling pathway A series of reactions within the cell that occur as a result of a single trigger reaction or compound interacting with a chemoreceptor resulting in a modulation of the force with which blood travels through the circulatory system. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions. tmpzr1t_l9r_go_relaxed.owl regulation of blood pressure by chemoreceptor signalling pathway biological_process owl:Class GO:0034104 biolink:NamedThing negative regulation of tissue remodeling Any process that stops, prevents, or reduces the frequency, rate, or extent of tissue remodeling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060602 biolink:NamedThing branch elongation of an epithelium The growth process in which a branch increases in length from its base to its tip. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-14T02:45:44Z biological_process owl:Class GO:0090686 biolink:NamedThing glycine betaine-activated nonselective monovalent cation channel activity Enables the transmembrane transfer of a monovalent cation by a channel that opens when glycine betaine has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl tb 2016-07-20T16:29:01Z molecular_function owl:Class GO:0050154 biolink:NamedThing opheline kinase activity Catalysis of the reaction: ATP + guanidinoethyl methyl phosphate = N'-phosphoguanidinoethyl methylphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:guanidinoethyl-methyl-phosphate phosphotransferase activity MetaCyc:OPHELINE-KINASE-RXN|KEGG_REACTION:R04388|RHEA:17553|EC:2.7.3.7 molecular_function owl:Class GO:1904530 biolink:NamedThing negative regulation of actin filament binding Any process that stops, prevents or reduces the frequency, rate or extent of actin filament binding. tmpzr1t_l9r_go_relaxed.owl inhibition of F-actin binding|inhibition of actin filament binding|negative regulation of actin cross-linking activity|down regulation of actin filament binding|down-regulation of actin cross-linking activity|inhibition of actin cross-linking activity|downregulation of F-actin binding|down-regulation of actin filament binding|down regulation of F-actin binding|negative regulation of F-actin binding|downregulation of actin cross-linking activity|down-regulation of F-actin binding|down regulation of actin cross-linking activity|downregulation of actin filament binding als 2015-07-30T10:41:55Z biological_process owl:Class GO:1990682 biolink:NamedThing CSF1-CSF1R complex A protein complex consisting of a macrophage colony-stimulating factor (CSF1, also called M-CSF) dimer bound to a dimerized receptor (CSF1R, also called FMS). Receptor dimerization requires the presence of the ligand. tmpzr1t_l9r_go_relaxed.owl CSF1:C-FMS complex|M-CSF:FMS complex|M-CSF:C-FMS complex|macrophage colony-stimulating factor:receptor complex|M-CSF:CSF1R complex bf 2015-03-10T12:23:03Z cellular_component owl:Class GO:0140605 biolink:NamedThing proton motive force-driven motor activity A motor activity driven by an electrochemical proton gradient (proton-motive force). PMF-driven motors are used by bacterial flagella. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19590 pg 2021-02-17T08:04:50Z molecular_function owl:Class GO:0003774 biolink:NamedThing cytoskeletal motor activity Generation of force resulting in movement, for example along a microfilament or microtubule, or in torque resulting in membrane scission or rotation of a flagellum. The energy required is obtained either from the hydrolysis of a nucleoside triphosphate or by an electrochemical proton gradient (proton-motive force). tmpzr1t_l9r_go_relaxed.owl motor activity https://github.com/geneontology/go-ontology/issues/21756|https://github.com/geneontology/go-ontology/issues/19590 Reactome:R-HSA-1861595 molecular_function owl:Class GO:1902964 biolink:NamedThing positive regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process Any process that activates or increases the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|activation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|activation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|activation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|up regulation of metalloendopeptidase activity involved in APP catabolism|up regulation of metalloendoprotease activity involved in APP catabolism|up-regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|up regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|positive regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|up-regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|positive regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|activation of metalloendoprotease activity involved in amyloid precursor protein catabolism|up regulation of metalloendoproteinase activity involved in APP catabolism|upregulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|up-regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|upregulation of metalloendoprotease activity involved in APP catabolism|up-regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|up regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|positive regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|positive regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|positive regulation of metalloendoproteinase activity involved in APP catabolic process|activation of metalloendopeptidase activity involved in APP catabolic process|upregulation of metalloendoproteinase activity involved in APP catabolism|up regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|activation of metalloendoprotease activity involved in amyloid precursor protein breakdown|upregulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|activation of metalloendopeptidase activity involved in amyloid precursor protein degradation|up regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|activation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|up regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|up-regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|activation of metalloendoprotease activity involved in APP catabolism|positive regulation of metalloendopeptidase activity involved in APP catabolic process|upregulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|positive regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|up-regulation of metalloendopeptidase activity involved in APP catabolism|positive regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|upregulation of metalloendoprotease activity involved in APP catabolic process|positive regulation of metalloendoprotease activity involved in APP catabolic process|up-regulation of metalloendoprotease activity involved in APP catabolism|up regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|activation of metalloendopeptidase activity involved in APP catabolism|positive regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|activation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|up regulation of metalloendopeptidase activity involved in APP catabolic process|upregulation of metalloendoproteinase activity involved in APP catabolic process|up-regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|up regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|up-regulation of metalloendoprotease activity involved in APP catabolic process|up regulation of metalloendoproteinase activity involved in APP catabolic process|up regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|up-regulation of metalloendoprotease activity involved in amyloid precursor protein degradation|up-regulation of metalloendoproteinase activity involved in APP catabolism|upregulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|positive regulation of metalloendopeptidase activity involved in APP catabolism|up-regulation of metalloendoproteinase activity involved in APP catabolic process|positive regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|up regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|up regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|up-regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|upregulation of metalloendoprotease activity involved in amyloid precursor protein breakdown|up-regulation of metalloendopeptidase activity involved in APP catabolic process|upregulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|up-regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|activation of metalloendoproteinase activity involved in amyloid precursor protein degradation|activation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process|positive regulation of metalloendoproteinase activity involved in APP catabolism|upregulation of metalloendopeptidase activity involved in APP catabolic process|upregulation of metalloendopeptidase activity involved in APP catabolism|up-regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|upregulation of metalloendoprotease activity involved in amyloid precursor protein degradation|upregulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|upregulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown|up regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism|activation of metalloendoprotease activity involved in amyloid precursor protein degradation|activation of metalloendoproteinase activity involved in APP catabolic process|activation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|activation of metalloendoproteinase activity involved in APP catabolism|up regulation of metalloendoprotease activity involved in APP catabolic process|upregulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process|positive regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|up-regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown|upregulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism|activation of metalloendoprotease activity involved in APP catabolic process|up-regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation|up regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation|upregulation of metalloendoprotease activity involved in amyloid precursor protein catabolism|positive regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process|positive regulation of metalloendoprotease activity involved in APP catabolism sjp 2014-05-06T09:12:11Z biological_process owl:Class GO:0043145 biolink:NamedThing sno(s)RNA 3'-end cleavage The endonucleolytic cleavage of snoRNA 3' ends, which is required for mature snoRNAs to be functional. tmpzr1t_l9r_go_relaxed.owl snoRNA 3'-end cleavage|sRNA 3'-end cleavage|sno(s)RNA 3' end cleavage https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0047744 biolink:NamedThing chloridazon-catechol dioxygenase activity Catalysis of the reaction: 5-amino-4-chloro-2-(2,3-dihydroxyphenyl)pyridazin-3(2H)-one + O(2) = 5-amino-4-chloro-2-(2-hydroxymuconoyl)pyridazin-3(2H)-one + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 5-amino-4-chloro-2-(2,3-dihydroxyphenyl)-3(2H)-pyridazinone 1,2-oxidoreductase (decyclizing) MetaCyc:CHLORIDAZON-CATECHOL-DIOXYGENASE-RXN|KEGG_REACTION:R04602|EC:1.13.11.36|RHEA:20449 molecular_function owl:Class GO:0042420 biolink:NamedThing dopamine catabolic process The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline. tmpzr1t_l9r_go_relaxed.owl dopamine breakdown|dopamine catabolism|dopamine degradation biological_process owl:Class GO:0034242 biolink:NamedThing negative regulation of syncytium formation by plasma membrane fusion Any process that decreases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034964 biolink:NamedThing box H/ACA RNA processing Any process involved in the conversion of a primary box H/ACA type small RNA transcript into a mature box H/ACA RNA. tmpzr1t_l9r_go_relaxed.owl box H/ACA sRNA processing|box H/ACA snoRNA processing https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0034319 biolink:NamedThing alcohol O-butanoyltransferase activity Catalysis of the reaction: butanoyl-CoA + an alcohol = CoA + a butyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901405 biolink:NamedThing negative regulation of tetrapyrrole catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of tetrapyrrole catabolic process|downregulation of tetrapyrrole catabolic process|down regulation of tetrapyrrole degradation|negative regulation of tetrapyrrole catabolism|inhibition of tetrapyrrole catabolism|down-regulation of tetrapyrrole degradation|down-regulation of tetrapyrrole catabolism|down regulation of tetrapyrrole breakdown|downregulation of tetrapyrrole breakdown|down-regulation of tetrapyrrole catabolic process|downregulation of tetrapyrrole catabolism|inhibition of tetrapyrrole degradation|down regulation of tetrapyrrole catabolism|negative regulation of tetrapyrrole degradation|inhibition of tetrapyrrole breakdown|down-regulation of tetrapyrrole breakdown|negative regulation of tetrapyrrole breakdown|downregulation of tetrapyrrole degradation|inhibition of tetrapyrrole catabolic process tt 2012-10-01T14:39:22Z biological_process owl:Class GO:1904695 biolink:NamedThing positive regulation of vascular associated smooth muscle contraction Any process that activates or increases the frequency, rate or extent of vascular smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of vascular smooth muscle contraction|activation of vascular smooth muscle contraction|up-regulation of vascular smooth muscle contraction|upregulation of vascular smooth muscle contraction|up regulation of vascular smooth muscle contraction rph 2015-09-29T13:39:14Z biological_process owl:Class GO:0015796 biolink:NamedThing galactitol transport The directed movement of galactitol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Galactitol is the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001937 biolink:NamedThing negative regulation of endothelial cell proliferation Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of endothelial cell proliferation|down-regulation of endothelial cell proliferation|down regulation of endothelial cell proliferation|inhibition of endothelial cell proliferation biological_process owl:Class GO:0031286 biolink:NamedThing negative regulation of sorocarp stalk cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl downregulation of stalk cell differentiation|down-regulation of stalk cell differentiation|negative regulation of stalk cell differentiation|inhibition of stalk cell differentiation|down regulation of stalk cell differentiation biological_process owl:Class GO:0046203 biolink:NamedThing spermidine catabolic process The chemical reactions and pathways resulting in the breakdown of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl spermidine breakdown|spermidine catabolism|spermidine degradation biological_process owl:Class GO:0019488 biolink:NamedThing ribitol catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of ribitol to form xylulose 5-phosphate. Ribitol is initially converted to D-ribulose, which is phosphorylated to form ribulose 5-phosphate, which is then converted into xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl ribitol degradation to xylulose 5-phosphate|ribitol breakdown to xylulose 5-phosphate|ribitol utilization MetaCyc:RIBITOLUTIL-PWY biological_process owl:Class GO:0046363 biolink:NamedThing ribitol catabolic process The chemical reactions and pathways resulting in the breakdown of ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. tmpzr1t_l9r_go_relaxed.owl ribitol degradation|ribitol breakdown|ribitol catabolism biological_process owl:Class GO:0001729 biolink:NamedThing ceramide kinase activity Catalysis of the reaction: ATP + ceramide = ADP + ceramide-1-phosphate. tmpzr1t_l9r_go_relaxed.owl acylsphingosine kinase activity|ATP:ceramide 1-phosphotransferase activity MetaCyc:CERAMIDE-KINASE-RXN|EC:2.7.1.138|RHEA:17929|Reactome:R-HSA-1638845 molecular_function owl:Class GO:0001727 biolink:NamedThing lipid kinase activity Catalysis of the phosphorylation of a simple or complex lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004071 biolink:NamedThing aspartate-ammonia ligase activity Catalysis of the reaction: ATP + L-aspartate + NH3 = AMP + diphosphate + L-asparagine. tmpzr1t_l9r_go_relaxed.owl L-aspartate:ammonia ligase (AMP-forming)|asparagine synthetase activity|L-asparagine synthetase activity EC:6.3.1.1|RHEA:11372|MetaCyc:ASNSYNA-RXN molecular_function owl:Class GO:0016211 biolink:NamedThing ammonia ligase activity Catalysis of the ligation of ammonia (NH3) to another substance via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.3.1.- molecular_function owl:Class GO:0035276 biolink:NamedThing ethanol binding Binding to ethanol, CH(3)-CH(2)-OH. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010410 biolink:NamedThing hemicellulose metabolic process The chemical reactions and pathways involving hemicelluloses, plant cell wall polysaccharides that have a backbone of 1,4-linked beta-D-pyranosyl residues in which O4 is in the equatorial orientation. Many different hemicelluloses usually occur intermixed with each molecular type representing different degrees of polymerization and contain many different sugar monomers, which can include glucose, xylose, mannose, galactose, and arabinose. Hemicelluloses also contain most of the D-pentose sugars and occasionally small amounts of L-sugars as well. Xylose is always the sugar monomer present in the largest amount, but mannuronic acid and galacturonic acid also tend to be present. tmpzr1t_l9r_go_relaxed.owl hemicellulose metabolism biological_process owl:Class GO:0018984 biolink:NamedThing naphthalenesulfonate metabolic process The chemical reactions and pathways involving naphthalenesulfonate, sulfonated derivatives of naphthalene. tmpzr1t_l9r_go_relaxed.owl naphthalenesulphonate metabolism|naphthalenesulfonate metabolism|naphthalenesulphonate metabolic process UM-BBD_pathwayID:nphs GO:0018932 biological_process owl:Class GO:0070637 biolink:NamedThing pyridine nucleoside metabolic process The chemical reactions and pathways involving any pyridine nucleoside, a nucleoside in which a pyridine base covalently bonded to a sugar, usually ribose. tmpzr1t_l9r_go_relaxed.owl pyridine nucleoside metabolism mah 2009-05-07T02:24:21Z biological_process owl:Class GO:1900368 biolink:NamedThing regulation of RNA interference Any process that modulates the frequency, rate or extent of RNA interference. tmpzr1t_l9r_go_relaxed.owl regulation of posttranscriptional gene silencing by siRNA|regulation of RNAi kmv 2012-04-13T08:28:39Z biological_process owl:Class GO:0032231 biolink:NamedThing regulation of actin filament bundle assembly Any process that modulates the frequency, rate or extent of the assembly of actin filament bundles. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament bundle formation|regulation of actin cable assembly biological_process owl:Class GO:1904227 biolink:NamedThing negative regulation of glycogen synthase activity, transferring glucose-1-phosphate Any process that stops, prevents or reduces the frequency, rate or extent of glycogen synthase activity, transferring glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl down regulation of glycogen synthase activity, transferring glucose-1-phosphate|inhibition of glycogen synthase activity, transferring glucose-1-phosphate|downregulation of glycogen synthase activity, transferring glucose-1-phosphate|down-regulation of glycogen synthase activity, transferring glucose-1-phosphate rl 2015-05-15T09:23:14Z biological_process owl:Class GO:0019697 biolink:NamedThing L-xylitol catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of L-xylitol to form xylulose 5-phosphate. L-xylitol is converted into L-xylulose, which is then phosphorylated to L-xylulose-5-phosphate. This is converted to D-xylulose-5-phosphate via the intermediate L-ribulose-5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-arabitol and xylitol degradation|L-xylitol breakdown to xylulose 5-phosphate|L-xylitol degradation to xylulose 5-phosphate|L-xylitol utilization MetaCyc:LARABITOLUTIL-PWY biological_process owl:Class GO:0031287 biolink:NamedThing positive regulation of sorocarp stalk cell differentiation Any process that activates or increases the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl up regulation of stalk cell differentiation|up-regulation of stalk cell differentiation|stimulation of stalk cell differentiation|positive regulation of stalk cell differentiation|activation of stalk cell differentiation|upregulation of stalk cell differentiation biological_process owl:Class GO:0102147 biolink:NamedThing 3'-O-methyltricetin O methyl transferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3'-O-methyltricetin = H+ + S-adenosyl-L-homocysteine + 3',5'-di-O-methyltricetin. tmpzr1t_l9r_go_relaxed.owl RHEA:27497|MetaCyc:RXN-11583 molecular_function owl:Class GO:1900111 biolink:NamedThing positive regulation of histone H3-K9 dimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K9 dimethylation. tmpzr1t_l9r_go_relaxed.owl activation of histone H3-K9 dimethylation|up-regulation of histone lysine H3 K9 dimethylation|upregulation of histone H3-K9 dimethylation|activation of histone lysine H3 K9 dimethylation|positive regulation of histone lysine H3 K9 dimethylation|up-regulation of histone H3-K9 dimethylation|upregulation of histone lysine H3 K9 dimethylation|positive regulation of histone H3 K9 dimethylation|up regulation of histone H3 K9 dimethylation|activation of histone H3 K9 dimethylation|upregulation of histone H3 K9 dimethylation|up regulation of histone H3-K9 dimethylation|up regulation of histone lysine H3 K9 dimethylation|up-regulation of histone H3 K9 dimethylation bf 2012-02-21T09:06:26Z biological_process owl:Class GO:1905707 biolink:NamedThing negative regulation of mitochondrial ATP synthesis coupled proton transport Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial ATP synthesis coupled proton transport. tmpzr1t_l9r_go_relaxed.owl vw 2016-11-17T14:07:40Z biological_process owl:Class GO:0090628 biolink:NamedThing plant epidermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into a plant epidermal cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl tb 2015-02-06T17:32:21Z biological_process owl:Class GO:1900845 biolink:NamedThing positive regulation of monodictyphenone biosynthetic process Any process that activates or increases the frequency, rate or extent of monodictyphenone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of monodictyphenone biosynthetic process di 2012-06-07T09:41:08Z biological_process owl:Class GO:1905183 biolink:NamedThing negative regulation of protein serine/threonine phosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of protein serine/threonine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of serine/threonine specific protein phosphatase activity|inhibition of protein serine/threonine phosphatase activity|downregulation of protein serine/threonine phosphatase activity|down regulation of serine/threonine specific protein phosphatase activity|down regulation of protein serine/threonine phosphatase activity|downregulation of serine/threonine specific protein phosphatase activity|down-regulation of protein serine/threonine phosphatase activity|negative regulation of serine/threonine specific protein phosphatase activity|inhibition of serine/threonine specific protein phosphatase activity mah 2016-05-10T15:28:04Z biological_process owl:Class GO:0051746 biolink:NamedThing thalianol synthase activity Catalysis of the cyclization of 3(S)-oxidosqualene to (3S,13S,14R)-malabarica-8,17,21-trien-3-ol (thalianol). tmpzr1t_l9r_go_relaxed.owl EC:5.4.99.31|RHEA:26160 molecular_function owl:Class GO:0042578 biolink:NamedThing phosphoric ester hydrolase activity Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002309 biolink:NamedThing T cell proliferation involved in immune response The expansion of a T cell population by cell division as part of an immune response. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte proliferation during immune response|T lymphocyte proliferation during immune response|T-cell proliferation during immune response|T cell proliferation during immune response biological_process owl:Class GO:2000132 biolink:NamedThing negative regulation of tyramine signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of tyramine signalling pathway mah 2010-09-29T09:32:00Z biological_process owl:Class GO:2000126 biolink:NamedThing negative regulation of octopamine or tyramine signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of octopamine or tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of octopamine or tyramine signalling pathway|negative regulation of octopamine/tyramine signaling pathway mah 2010-09-29T09:27:16Z biological_process owl:Class GO:0106092 biolink:NamedThing glial cell projection elongation involved in axon ensheathment The extension of a glial cell process or projection to wrap around an axon. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-26T19:43:00Z biological_process owl:Class GO:0044637 biolink:NamedThing envenomation resulting in negative regulation of complement activation, classical pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the negative regulation of complement activation via the classical pathway of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:46:56Z biological_process owl:Class GO:0044636 biolink:NamedThing envenomation resulting in modulation of complement activation, classical pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the regulation of complement activation via the classical pathway of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:40:57Z biological_process owl:Class GO:1990549 biolink:NamedThing mitochondrial NAD transmembrane transport The process in which NAD is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:09:51Z biological_process owl:Class GO:0033426 biolink:NamedThing CAC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CAC codon. tmpzr1t_l9r_go_relaxed.owl histidine tRNA Note that in the standard genetic code, CAC codes for histidine. molecular_function owl:Class GO:0008838 biolink:NamedThing diaminopropionate ammonia-lyase activity Catalysis of the reaction: 2,3-diaminopropionate + H2O = pyruvate + 2 NH3. tmpzr1t_l9r_go_relaxed.owl alpha,beta-diaminopropionate ammonia-lyase activity|diaminopropionatase activity|2,3-diaminopropionate ammonia-lyase (adding H2O; pyruvate-forming)|2,3-diaminopropionate ammonia-lyase activity MetaCyc:4.3.1.15-RXN|RHEA:22084|EC:4.3.1.15 molecular_function owl:Class GO:0021945 biolink:NamedThing positive regulation of cerebellar granule cell migration by calcium The process that increases the extent of granule cell motility using intracellular calcium signaling mechanisms during radial migration. tmpzr1t_l9r_go_relaxed.owl calcium-mediated up regulation of granule cell migration|calcium-mediated up-regulation of granule cell migration|calcium-mediated stimulation of granule cell migration|calcium-mediated activation of granule cell migration|calcium-mediated upregulation of granule cell migration|calcium-mediated positive regulation of granule cell migration biological_process owl:Class GO:0102477 biolink:NamedThing 2,5,7-trihydroxyflavanone 6C-glucoside dehydratase activity Catalysis of the reaction: 6C-glucosyl-2,5,7-trihydroxyflavanone <=> H+ + 6C-hexosyl chrysin + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14088 molecular_function owl:Class GO:0098723 biolink:NamedThing skeletal muscle myofibril A myofibril of a skeletal muscle fiber. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030016 biolink:NamedThing myofibril The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Myofibril cellular_component owl:Class GO:0004154 biolink:NamedThing dihydropterin oxidase activity Catalysis of the reaction: a 7,8-dihydropteridine + O2 = a pterin + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004890 biolink:NamedThing GABA-A receptor activity Combining with the amino acid gamma-aminobutyric acid (GABA, 4-aminobutyrate) to initiate a change in cell activity. GABA-A receptors function as chloride channels. tmpzr1t_l9r_go_relaxed.owl ionotropic GABA receptor activity Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'chloride channel activity ; GO:0005254' and 'inhibitory extracellular ligand-gated ion channel activity ; GO:0005237'. molecular_function owl:Class GO:0016917 biolink:NamedThing GABA receptor activity Combining with gamma-aminobutyric acid (GABA), and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. (GABA, 4-aminobutyrate) is an amino acid which acts as a neurotransmitter in some organisms. tmpzr1t_l9r_go_relaxed.owl GABA binding|4-aminobutyrate receptor activity|gamma-aminobutyric acid binding|gamma-aminobutyric acid receptor activity|4-aminobutanoate receptor activity|gamma-aminobutyrate binding See also the molecular function term 'neurotransmitter receptor activity ; GO:0030594'. molecular_function owl:Class GO:0033525 biolink:NamedThing sinapate ester biosynthetic process The chemical reactions and pathways resulting in the formation of ester derivates of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl sinapate ester synthesis|sinapate ester formation|sinapate ester anabolism|sinapate ester biosynthesis MetaCyc:PWY-3301 biological_process owl:Class GO:0090074 biolink:NamedThing negative regulation of protein homodimerization activity Any process that decreases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T11:15:40Z biological_process owl:Class GO:0006429 biolink:NamedThing leucyl-tRNA aminoacylation The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. The leucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a leucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905400 biolink:NamedThing negative regulation of activated CD4-positive, alpha-beta T cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|downregulation of activated CD4-positive, alpha-beta T-cell apoptosis|negative regulation of activated CD4-positive, alpha-beta T-cell apoptosis|downregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|down regulation of activated CD4-positive, alpha-beta T cell apoptotic process|down regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|down regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|inhibition of activated CD4-positive, alpha-beta T-cell apoptotic process|down-regulation of activated CD4-positive, alpha-beta T cell apoptotic process|down regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|down regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|down-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|downregulation of activated CD4-positive, alpha-beta T-cell apoptotic process|downregulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|negative regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|down regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|inhibition of activated CD4-positive, alpha-beta T-cell apoptosis|down-regulation of activated CD4-positive, alpha-beta T cell apoptosis|downregulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|down-regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|downregulation of activated CD4-positive, alpha-beta T cell apoptotic process|down regulation of activated CD4-positive, alpha-beta T-cell apoptosis|negative regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|inhibition of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|negative regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|downregulation of activated CD4-positive, alpha-beta T cell apoptosis|inhibition of activated CD4-positive, alpha-beta T cell apoptosis|downregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|negative regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|inhibition of activated CD4-positive, alpha-beta T cell apoptotic process|negative regulation of activated CD4-positive, alpha-beta T cell apoptosis|inhibition of activated CD4-positive, alpha-beta T lymphocyte apoptosis|down regulation of activated CD4-positive, alpha-beta T cell apoptosis|inhibition of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|down-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|inhibition of activated CD4-positive, alpha-beta T lymphocyte apoptotic process|negative regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|down-regulation of activated CD4-positive, alpha-beta T-cell apoptosis|down-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process pga 2016-08-25T09:09:53Z biological_process owl:Class GO:1905399 biolink:NamedThing regulation of activated CD4-positive, alpha-beta T cell apoptotic process Any process that modulates the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of activated CD4-positive, alpha-beta T-cell apoptosis|regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process|regulation of activated CD4-positive, alpha-beta T-cell apoptotic process|regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis|regulation of activated CD4-positive, alpha-beta T cell apoptosis|regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis|regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process pga 2016-08-25T09:09:46Z biological_process owl:Class GO:0034054 biolink:NamedThing suppression by symbiont of host defense-related programmed cell death Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of defense-related programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host defense-related programmed cell death|negative regulation by symbiont of plant HR|inhibition of HR|negative regulation by symbiont of host defense-related PCD|negative regulation by symbiont of plant hypersensitive response|inhibition by symbiont of host defense-related PCD|down-regulation by symbiont of host defense-related programmed cell death|inhibition of hypersensitive response|negative regulation by symbiont of host defense-related programmed cell death|downregulation by symbiont of host defense-related programmed cell death|suppression of HR|inhibition by symbiont of host defense-related programmed cell death|inhibition of host defense-related PCD Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term 'negative regulation of plant-type hypersensitive response ; GO:0034051'. biological_process owl:Class GO:0005152 biolink:NamedThing interleukin-1 receptor antagonist activity Blocks the binding of interleukin-1 to the interleukin-1 receptor complex. tmpzr1t_l9r_go_relaxed.owl IL-1ra molecular_function owl:Class GO:0009140 biolink:NamedThing pyrimidine nucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside diphosphate catabolism|pyrimidine nucleoside diphosphate degradation|pyrimidine nucleoside diphosphate breakdown biological_process owl:Class GO:0034111 biolink:NamedThing negative regulation of homotypic cell-cell adhesion Any process that stops, prevents, or reduces the frequency, rate, or extent of homotypic cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031498 biolink:NamedThing chromatin disassembly The controlled breakdown of chromatin from a higher order structure into its simpler subcomponents, DNA, histones, other proteins, and sometimes RNA. tmpzr1t_l9r_go_relaxed.owl chromatin maintenance biological_process owl:Class GO:0006333 biolink:NamedThing chromatin assembly or disassembly The formation or destruction of chromatin structures. tmpzr1t_l9r_go_relaxed.owl chromatin assembly/disassembly biological_process owl:Class GO:0019633 biolink:NamedThing shikimate catabolic process The chemical reactions and pathways resulting in the breakdown of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. tmpzr1t_l9r_go_relaxed.owl shikimate degradation|shikimate breakdown|shikimate catabolism MetaCyc:SHIKIMATEDEG-PWY biological_process owl:Class GO:0051889 biolink:NamedThing negative regulation of timing of exogen Any process that stops, prevents, or reduces the frequency, rate or extent of timing of exogen, the shedding phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of exogen|down regulation of exogen|inhibition of exogen|down-regulation of exogen|downregulation of exogen biological_process owl:Class GO:0009129 biolink:NamedThing pyrimidine nucleoside monophosphate metabolic process The chemical reactions and pathways involving pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside monophosphate metabolism biological_process owl:Class GO:0075297 biolink:NamedThing negative regulation of ascospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of ascospore formation, a process in which a sexual spore, named ascospore, from Ascomycete fungi was produced inside an ascus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904849 biolink:NamedThing positive regulation of cell chemotaxis to fibroblast growth factor Any process that activates or increases the frequency, rate or extent of cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl up regulation of cell chemotaxis to fibroblast growth factor|activation of cell chemotaxis to fibroblast growth factor|up-regulation of cell chemotaxis to fibroblast growth factor|upregulation of cell chemotaxis to fibroblast growth factor rph 2015-12-10T12:04:16Z biological_process owl:Class GO:0102395 biolink:NamedThing 9-cis-beta-carotene 9',10'-cleavage oxygenase activity Catalysis of the reaction: 9-cis-beta-carotene + O2 <=> 9-cis-10'-apo-beta-carotenal + beta-ionone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13642|EC:1.13.11.68|RHEA:34399 molecular_function owl:Class GO:0034033 biolink:NamedThing purine nucleoside bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a purine nucleoside bisphosphate, a compound consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside bisphosphate formation|purine nucleoside bisphosphate biosynthesis|purine nucleoside bisphosphate synthesis|purine nucleoside bisphosphate anabolism biological_process owl:Class GO:0033788 biolink:NamedThing leucoanthocyanidin reductase activity Catalysis of the reaction: (2R,3S)-catechin + NADP+ + H2O = 2,3-trans-3,4-cis-leucocyanidin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl (2R,3S)-catechin:NADP+ 4-oxidoreductase activity|leucocyanidin reductase activity MetaCyc:RXN-1484|EC:1.17.1.3|RHEA:10616 molecular_function owl:Class GO:0140111 biolink:NamedThing [choline trimethylamine-lyase]-activating enzyme activity Catalyzes the activation of choline trimethylamine-lyase by generation of an organic free radical on a glycine residue via a homolytic cleavage of S-adenosyl-L-methionine (SAM). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14190 MetaCyc:RXN-16470 pg 2017-10-20T13:57:38Z molecular_function owl:Class GO:0110101 biolink:NamedThing L-valine transmembrane import into vacuole The directed movement of L-valine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl kmv 2018-03-14T19:56:06Z biological_process owl:Class GO:1903542 biolink:NamedThing negative regulation of exosomal secretion Any process that stops, prevents or reduces the frequency, rate or extent of exosomal secretion. tmpzr1t_l9r_go_relaxed.owl down-regulation of extracellular vesicular exosome secretion|down regulation of extracellular vesicular exosome secretion|downregulation of exosomal protein secretion|negative regulation of secretion of exosome|down regulation of exosomal protein secretion|inhibition of exosomal protein secretion|down-regulation of secretion of exosome|down regulation of secretion of exosome|downregulation of extracellular vesicular exosome secretion|inhibition of exosomal secretion|down regulation of exosomal secretion|inhibition of secretion of exosome|negative regulation of exosomal protein secretion|negative regulation of extracellular vesicular exosome secretion|inhibition of exosomal secretory pathway|negative regulation of exosomal secretory pathway|down-regulation of exosomal secretory pathway|inhibition of extracellular vesicular exosome secretion|downregulation of secretion of exosome|down-regulation of exosomal secretion|downregulation of exosomal secretion|down-regulation of exosomal protein secretion|downregulation of exosomal secretory pathway|down regulation of exosomal secretory pathway pga 2014-10-14T11:39:02Z biological_process owl:Class GO:0050859 biolink:NamedThing negative regulation of B cell receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell. tmpzr1t_l9r_go_relaxed.owl inhibition of B cell receptor signaling pathway|down regulation of B cell receptor signaling pathway|downregulation of B cell receptor signaling pathway|negative regulation of B-cell receptor signalling pathway|negative regulation of B-cell receptor signaling pathway|negative regulation of B lymphocyte receptor signaling pathway|negative regulation of B-lymphocyte receptor signaling pathway|negative regulation of B lymphocyte receptor signalling pathway|down-regulation of B cell receptor signaling pathway|negative regulation of B-lymphocyte receptor signalling pathway|negative regulation of B cell receptor signalling pathway biological_process owl:Class GO:0033628 biolink:NamedThing regulation of cell adhesion mediated by integrin Any process that modulates the frequency, rate, or extent of cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl regulation of cell adhesion mediated by integrin complex biological_process owl:Class GO:0034278 biolink:NamedThing stemar-13-ene synthase activity Catalysis of the reaction: 9-alpha-copalyl diphosphate = stemar-13-ene + diphosphate. tmpzr1t_l9r_go_relaxed.owl 9alpha-copalyl-diphosphate diphosphate-lyase (stemar-13-ene-forming) activity EC:4.2.3.33|KEGG_REACTION:R09115|MetaCyc:RXN-4882|RHEA:25552 molecular_function owl:Class GO:0140529 biolink:NamedThing CMG complex assembly The aggregation, arrangement and bonding together of a set of components to form the CMG complex, a protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication. The process begins when additional proteins (e.g. Cdc45 and Sld3) join the loaded, inactive double MCM hexamer at replication origins, and ends when Mcm10 triggers the separation of the Mcm2-7 double hexamers, forming two active CMG complexes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16570 pg 2020-10-12T16:42:17Z biological_process owl:Class GO:0015546 biolink:NamedThing sulfathiazole transmembrane transporter activity Enables the transfer of sulfathiazole from one side of a membrane to the other. Sulfathiazole is an antibacterial agent of the sulfonamide group. tmpzr1t_l9r_go_relaxed.owl bicyclomycin/sulfathiazole:hydrogen antiporter activity|sulphathiazole transporter activity molecular_function owl:Class GO:0036427 biolink:NamedThing all-trans-undecaprenyl-phosphate mannosyltransferase activity Catalysis of the reaction: all-trans-undecaprenyl phosphate + GDP-alpha-D-mannose = D-mannosyl undecaprenyl phosphate + GDP. tmpzr1t_l9r_go_relaxed.owl RHEA:28118 bf 2013-09-16T13:23:06Z molecular_function owl:Class GO:0047267 biolink:NamedThing undecaprenyl-phosphate mannosyltransferase activity Catalysis of the reaction: GDP-mannose + undecaprenyl phosphate = GDP + D-mannosyl-1-phosphoundecaprenol. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphomannose-undecaprenyl phosphate mannosyltransferase activity|GDP mannose-undecaprenyl phosphate mannosyltransferase activity|GDP-D-mannose:lipid phosphate transmannosylase activity|GDP-mannose:undecaprenyl-phosphate D-mannosyltransferase activity EC:2.4.1.54 molecular_function owl:Class GO:0001868 biolink:NamedThing regulation of complement activation, lectin pathway Any process that modulates the frequency, rate or extent of the lectin pathway of complement activation. tmpzr1t_l9r_go_relaxed.owl regulation of complement cascade, lectin pathway biological_process owl:Class GO:1904939 biolink:NamedThing regulation of DNA nucleotidylexotransferase activity Any process that modulates the frequency, rate or extent of DNA nucleotidylexotransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of deoxyribonucleic acid nucleotidyltransferase activity|regulation of terminal deoxynucleotidyltransferase activity|regulation of terminal addition enzyme activity|regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|regulation of terminal deoxyribonucleotidyltransferase activity|regulation of terminal deoxynucleotide transferase activity|regulation of deoxyribonucleic nucleotidyltransferase activity|regulation of terminal transferase activity|regulation of addase activity|regulation of deoxynucleotidyl terminal transferase activity|regulation of TdT bc 2016-02-02T15:15:57Z biological_process owl:Class GO:1903812 biolink:NamedThing L-serine import across plasma membrane The directed movement of L-serine into a cell. tmpzr1t_l9r_go_relaxed.owl L-serine import into cell mah 2015-01-16T14:36:29Z biological_process owl:Class GO:0015825 biolink:NamedThing L-serine transport The directed movement of L-serine, the L-enantiomer of 2-amino-3-hydroxypropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-serine import tb 2012-10-01T11:10:51Z GO:0090479 biological_process owl:Class GO:1903971 biolink:NamedThing positive regulation of response to macrophage colony-stimulating factor Any process that activates or increases the frequency, rate or extent of response to macrophage colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl activation of response to macrophage colony-stimulating factor stimulus|up-regulation of response to M-CSF|activation of response to M-CSF|positive regulation of response to macrophage colony-stimulating factor stimulus|up-regulation of response to macrophage colony-stimulating factor stimulus|up regulation of response to M-CSF|upregulation of response to macrophage colony-stimulating factor stimulus|positive regulation of response to M-CSF|activation of response to macrophage colony-stimulating factor|up regulation of response to macrophage colony-stimulating factor|up regulation of response to macrophage colony-stimulating factor stimulus|upregulation of response to M-CSF|up-regulation of response to macrophage colony-stimulating factor|upregulation of response to macrophage colony-stimulating factor nc 2015-03-02T14:41:14Z biological_process owl:Class GO:0034585 biolink:NamedThing 21U-RNA metabolic process The chemical reactions and pathways involving 21U-RNAs, a class of single-stranded RNA molecules of about 21 nucleotides in length characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome. tmpzr1t_l9r_go_relaxed.owl 21U-RNA metabolism biological_process owl:Class GO:0042679 biolink:NamedThing compound eye cone cell fate specification The process in which a cell becomes capable of differentiating autonomously into a compound eye cone cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl GO:0042678 biological_process owl:Class GO:0072146 biolink:NamedThing DCT cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a distal convoluted tubule cell. tmpzr1t_l9r_go_relaxed.owl distal convoluted tubule cell fate commitment mah 2010-02-24T01:59:04Z biological_process owl:Class GO:0070650 biolink:NamedThing actin filament bundle distribution Any cellular process that establishes the spatial arrangement of actin filament bundles within the cell. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-12T02:20:58Z biological_process owl:Class GO:0097363 biolink:NamedThing protein O-GlcNAc transferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + [protein]-L-serine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine, or UDP-N-acetyl-D-glucosamine + [protein]-L-threonine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:protein-O-beta-N-acetyl-D-glucosaminyl transferase|OGTase|O-linked N-acetylglucosaminyltransferase|O-GlcNAc transferase Reactome:R-HSA-9687828|EC:2.4.1.255 pr 2012-07-24T01:46:51Z molecular_function owl:Class GO:0019481 biolink:NamedThing L-alanine catabolic process, by transamination The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination. tmpzr1t_l9r_go_relaxed.owl L-alanine degradation, by transamination|L-alanine breakdown, by transamination MetaCyc:ALANINE-DEG3-PWY biological_process owl:Class GO:0009029 biolink:NamedThing tetraacyldisaccharide 4'-kinase activity Catalysis of the reaction: 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-(1->6)-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + ATP = ADP + 2 H(+) + lipid IV(a). tmpzr1t_l9r_go_relaxed.owl ATP:2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D-glucosaminyl-beta-D-1,6-glucosaminyl-beta-phosphate 4'-O-phosphotransferase activity|lipid-A 4'-kinase activity KEGG_REACTION:R04657|MetaCyc:TETRAACYLDISACC4KIN-RXN|RHEA:20700|EC:2.7.1.130 molecular_function owl:Class GO:0010203 biolink:NamedThing response to very low fluence red light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Very low fluence red light is defined in this case as short pulses of red light followed by darkness, providing light levels of less than 0.001 mmol/m2/sec. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055122 biolink:NamedThing response to very low light intensity stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002294 biolink:NamedThing CD4-positive, alpha-beta T cell differentiation involved in immune response The process in which an antigenically naive CD4-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells. tmpzr1t_l9r_go_relaxed.owl CD4-positive, alpha-beta T lymphocyte differentiation during immune response|CD4-positive, alpha-beta T-cell differentiation during immune response|CD4-positive, alpha-beta T cell development involved in immune response|CD4-positive, alpha-beta T-lymphocyte differentiation during immune response|CD4-positive, alpha-beta T cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0033084 biolink:NamedThing regulation of immature T cell proliferation in thymus Any process that modulates the frequency, rate or extent of immature T cell proliferation in the thymus. tmpzr1t_l9r_go_relaxed.owl regulation of thymocyte cell proliferation|regulation of thymic T cell proliferation|regulation of thymocyte proliferation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:2000452 biolink:NamedThing regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation Any process that modulates the frequency, rate or extent of CD8-positive, alpha-beta cytotoxic T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:44:39Z biological_process owl:Class GO:0047872 biolink:NamedThing dolichol O-acyltransferase activity Catalysis of the reaction: palmitoyl-CoA + dolichol = CoA + dolichyl palmitate. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA:dolichol O-palmitoyltransferase activity|acyl-CoA:dolichol acyltransferase activity MetaCyc:DOLICHOL-O-ACYLTRANSFERASE-RXN|RHEA:16685|EC:2.3.1.123 molecular_function owl:Class GO:1902225 biolink:NamedThing negative regulation of acrosome reaction Any process that stops, prevents or reduces the frequency, rate or extent of acrosome reaction. tmpzr1t_l9r_go_relaxed.owl downregulation of acrosome reaction|inhibition of acrosome reaction|down-regulation of acrosome reaction|down regulation of acrosome reaction ae 2013-06-13T14:17:11Z biological_process owl:Class GO:0051415 biolink:NamedThing microtubule nucleation by interphase microtubule organizing center The 'de novo' formation of a microtubule by the interphase microtubule organizing center during interphase, the stage of cell cycle between successive rounds of chromosome segregation. tmpzr1t_l9r_go_relaxed.owl microtubule nucleation during interphase by interphase microtubule organizing center|microtubule nucleation during interphase by IMTOC|interphase microtubule organizing center-mediated microtubule nucleation during interphase|interphase microtubule nucleation by interphase microtubule organising centre|interphase microtubule nucleation by interphase microtubule organizing center|IMTOC-mediated microtubule nucleation during interphase biological_process owl:Class GO:0098539 biolink:NamedThing cytoplasmic side of transport vesicle membrane The side (leaflet) of the transport vesicle membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external side of transport vesicle membrane dos 2013-10-24T11:48:07Z cellular_component owl:Class GO:2001262 biolink:NamedThing positive regulation of semaphorin-plexin signaling pathway Any process that activates or increases the frequency, rate or extent of semaphorin-plexin signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of semaphorin-plexin signalling pathway vk 2011-12-08T02:05:53Z biological_process owl:Class GO:2001260 biolink:NamedThing regulation of semaphorin-plexin signaling pathway Any process that modulates the frequency, rate or extent of semaphorin-plexin signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of semaphorin-plexin signalling pathway vk 2011-12-08T02:05:41Z biological_process owl:Class GO:0006941 biolink:NamedThing striated muscle contraction A process in which force is generated within striated muscle tissue, resulting in the shortening of the muscle. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope. tmpzr1t_l9r_go_relaxed.owl sarcomeric muscle contraction biological_process owl:Class GO:0046952 biolink:NamedThing ketone body catabolic process The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl utilization of ketone bodies|ketone body degradation|ketolysis|ketone body catabolism|ketone body breakdown Reactome:R-HSA-77108|MetaCyc:PWY66-368 biological_process owl:Class GO:0140224 biolink:NamedThing SLAC complex A protein complex that regulates Arp2/3 complex-mediated actin nucleation. tmpzr1t_l9r_go_relaxed.owl pg 2018-05-29T09:54:08Z cellular_component owl:Class GO:0102490 biolink:NamedThing 8-oxo-dGTP phosphohydrolase activity Catalysis of the reaction: 8-oxo-dGTP + 2 H2O <=> 8-oxo-dGMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14205|EC:3.6.1.5 molecular_function owl:Class GO:0050768 biolink:NamedThing negative regulation of neurogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of neurogenesis, the generation of cells within the nervous system. tmpzr1t_l9r_go_relaxed.owl down regulation of neurogenesis|downregulation of neurogenesis|inhibition of neurogenesis|down-regulation of neurogenesis biological_process owl:Class GO:0009091 biolink:NamedThing homoserine catabolic process The chemical reactions and pathways resulting in the breakdown of homoserine, alpha-amino-gamma-hydroxybutyric acid. tmpzr1t_l9r_go_relaxed.owl homoserine degradation|homoserine catabolism|homoserine breakdown MetaCyc:HOMOCYSDEGR-PWY biological_process owl:Class GO:1900819 biolink:NamedThing orlandin metabolic process The chemical reactions and pathways involving orlandin. tmpzr1t_l9r_go_relaxed.owl orlandin metabolism di 2012-06-04T10:14:55Z biological_process owl:Class GO:2000946 biolink:NamedThing negative regulation of amylopectin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of amylopectin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of Amylopectin catabolism tt 2011-08-01T02:15:27Z biological_process owl:Class GO:2000943 biolink:NamedThing negative regulation of amylopectin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of amylopectin metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of Amylopectin metabolism tt 2011-08-01T02:10:32Z biological_process owl:Class GO:0007227 biolink:NamedThing signal transduction downstream of smoothened The series of molecular signals that are initiated by the transmembrane protein Smoothened. In the presence of a Hedgehog signaling molecule, the Patched protein no longer inhibits the activity of Smoothened, and Smoothened signals via the Hedgehog signaling complex to activate downstream components of the Hedgehog signaling pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009753 biolink:NamedThing response to jasmonic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to jasmonic acid stimulus biological_process owl:Class GO:0033322 biolink:NamedThing homomethionine biosynthetic process The chemical reactions and pathways resulting in the formation of homomethionine, a non-protein amino acid synthesized from methionine via chain elongation. tmpzr1t_l9r_go_relaxed.owl homomethionine biosynthesis|homomethionine synthesis|homomethionine formation|homomethionine anabolism MetaCyc:PWY-1186 biological_process owl:Class GO:0006776 biolink:NamedThing vitamin A metabolic process The chemical reactions and pathways involving any of the vitamin A compounds, retinol, retinal (retinaldehyde) and retinoic acid, all of which are derivatives of beta-carotene. tmpzr1t_l9r_go_relaxed.owl vitamin A metabolism biological_process owl:Class GO:0006775 biolink:NamedThing fat-soluble vitamin metabolic process The chemical reactions and pathways involving of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. tmpzr1t_l9r_go_relaxed.owl fat-soluble vitamin metabolism biological_process owl:Class GO:2000433 biolink:NamedThing positive regulation of cytokinesis, actomyosin contractile ring assembly Any process that activates or increases the frequency, rate or extent of cytokinesis, actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of contractile ring assembly vw 2011-03-03T12:18:43Z biological_process owl:Class GO:2000431 biolink:NamedThing regulation of cytokinesis, actomyosin contractile ring assembly Any process that modulates the frequency, rate or extent of cytokinesis, actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl regulation of contractile ring assembly vw 2011-03-03T12:17:41Z biological_process owl:Class GO:0009794 biolink:NamedThing regulation of mitotic cell cycle, embryonic Any process that modulates the frequency, rate or extent of replication and segregation of genetic material in the embryo. tmpzr1t_l9r_go_relaxed.owl embryonic mitotic cell cycle modulation|embryonic mitotic cell cycle regulator|embryonic mitotic cell cycle regulation|regulation of embryonic mitotic cell cycle progression|modulation of embryonic mitotic cell cycle progression|regulation of embryonic mitotic cell cycle|regulation of progression through embryonic mitotic cell cycle biological_process owl:Class GO:0045656 biolink:NamedThing negative regulation of monocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of monocyte differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of monocyte differentiation|down regulation of monocyte differentiation|downregulation of monocyte differentiation|inhibition of monocyte differentiation biological_process owl:Class GO:0018106 biolink:NamedThing peptidyl-histidine phosphorylation The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0036|RESID:AA0035 biological_process owl:Class GO:0102216 biolink:NamedThing maltodextrin water dikinase Catalysis of the reaction: ATP + H2O + a maltodextrin = AMP + hydrogenphosphate + a 6-phosphogluco-maltodextrin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12201|EC:2.7.9.4 molecular_function owl:Class GO:0016781 biolink:NamedThing phosphotransferase activity, paired acceptors Catalysis of the transfer of two phosphate groups from a donor, such as ATP, to two different acceptors. tmpzr1t_l9r_go_relaxed.owl EC:2.7.9.- molecular_function owl:Class GO:0002879 biolink:NamedThing positive regulation of acute inflammatory response to non-antigenic stimulus Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl up-regulation of acute inflammatory response to non-antigenic stimulus|activation of acute inflammatory response to non-antigenic stimulus|upregulation of acute inflammatory response to non-antigenic stimulus|stimulation of acute inflammatory response to non-antigenic stimulus|up regulation of acute inflammatory response to non-antigenic stimulus biological_process owl:Class GO:0007485 biolink:NamedThing imaginal disc-derived male genitalia development The process whose specific outcome is the progression of the male genitalia over time, from formation as part of the genital disc to the mature structure. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male genital development biological_process owl:Class GO:0007484 biolink:NamedThing imaginal disc-derived genitalia development The process whose specific outcome is the progression of the genitalia over time, from formation as part of the genital disc to the mature structure. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl genital development biological_process owl:Class GO:0019042 biolink:NamedThing viral latency The process by which, after initial infection, a virus lies dormant within a cell and viral production ceases. The process ends when the virus switches from latency and starts to replicate. tmpzr1t_l9r_go_relaxed.owl viral dormancy|latent virus infection|phage lysogeny GO:0075710|GO:0030069 biological_process owl:Class GO:0018265 biolink:NamedThing GPI anchor biosynthetic process via N-asparaginyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-asparagine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a asparaginyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor synthesis via N-asparaginyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-asparaginyl-glycosylphosphatidylinositolethanolamine|GPI anchor formation via N-asparaginyl-glycosylphosphatidylinositolethanolamine RESID:AA0158 biological_process owl:Class GO:0034349 biolink:NamedThing glial cell apoptotic process Any apoptotic process in a glial cell, a non-neuronal cell of the nervous system. tmpzr1t_l9r_go_relaxed.owl apoptosis of glia|programmed cell death of glial cells by apoptosis|glia programmed cell death by apoptosis|glia apoptosis|programmed cell death, glia|programmed cell death, glial cells|glial cell apoptosis|programmed cell death of glia by apoptosis|apoptosis of glial cells|glial cell programmed cell death by apoptosis biological_process owl:Class GO:1904234 biolink:NamedThing positive regulation of aconitate hydratase activity Any process that activates or increases the frequency, rate or extent of aconitate hydratase activity. tmpzr1t_l9r_go_relaxed.owl activation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|activation of aconitate hydratase activity|up regulation of aconitase activity|upregulation of aconitase activity|activation of citrate(isocitrate) hydro-lyase activity|up regulation of aconitate hydratase activity|upregulation of aconitate hydratase activity|up regulation of citrate(isocitrate) hydro-lyase activity|positive regulation of citrate(isocitrate) hydro-lyase activity|up-regulation of citrate(isocitrate) hydro-lyase activity|upregulation of cis-aconitase activity|up regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|up-regulation of aconitase activity|up-regulation of aconitate hydratase activity|activation of aconitase activity|up regulation of cis-aconitase activity|up-regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|positive regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|positive regulation of aconitase activity|upregulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|activation of cis-aconitase activity|upregulation of citrate(isocitrate) hydro-lyase activity|up-regulation of cis-aconitase activity|positive regulation of cis-aconitase activity rl 2015-05-15T09:55:29Z biological_process owl:Class GO:1904232 biolink:NamedThing regulation of aconitate hydratase activity Any process that modulates the frequency, rate or extent of aconitate hydratase activity. tmpzr1t_l9r_go_relaxed.owl regulation of aconitase activity|regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|regulation of citrate(isocitrate) hydro-lyase activity|regulation of citrate hydro-lyase activity|regulation of cis-aconitase activity rl 2015-05-15T09:55:17Z biological_process owl:Class GO:0048579 biolink:NamedThing negative regulation of long-day photoperiodism, flowering Any process that stops, prevents or reduces long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl downregulation of long-day photoperiodism, flowering|down regulation of long-day photoperiodism, flowering|down-regulation of long-day photoperiodism, flowering|inhibition of long-day photoperiodism, flowering biological_process owl:Class GO:0015628 biolink:NamedThing protein secretion by the type II secretion system The process in which proteins are secreted across the outer membrane of Gram-negative bacteria by the type II secretion system. Proteins using this pathway are first translocated across the cytoplasmic membrane via the Sec or Tat pathways. tmpzr1t_l9r_go_relaxed.owl protein secretion by the general secretion pathway|protein secretion by the general secretory pathway|type II protein secretion system|protein secretion by the type II protein secretion system|protein secretion by the T2SS|protein secretion by the T2S Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular component term 'type II protein secretion system complex ; GO:0015627'. This process refers specifically to secretion across the outer membrane. For components of the Sec and Tat pathways, consider annotating to 'protein transport by the Sec complex ; GO:0043952' and 'protein transport by the Tat complex ; GO:0043953'. Note that this term is used for annotation of proteins that compose the secretion complex but not the proteins being secreted. biological_process owl:Class GO:0030680 biolink:NamedThing dimeric ribonuclease P complex A ribonuclease P complex that contains a single RNA molecule that is necessary and usually sufficient for catalysis, and a single protein molecule. Examples of this complex are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl dimeric RNase P complex cellular_component owl:Class GO:2000962 biolink:NamedThing positive regulation of cellooligosaccharide metabolic process Any process that activates or increases the frequency, rate or extent of cellooligosaccharide metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellooligosaccharide metabolism tt 2011-08-01T02:26:02Z biological_process owl:Class GO:0019884 biolink:NamedThing antigen processing and presentation of exogenous antigen The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl antigen presentation, exogenous antigen biological_process owl:Class GO:0033301 biolink:NamedThing cell cycle comprising mitosis without cytokinesis A mitotic cell cycle in which mitosis is completed but cytokinesis does not occur, resulting in a cell containing multiple nuclei each with a chromosomal complement of the original ploidy (usually 2N). tmpzr1t_l9r_go_relaxed.owl Note that this term should be used for naturally occurring instances of mitosis without cytokinesis, e.g. in the tapetum of flowers and in a number of lower eukaryotes; it should not be used for abnormal events such as may occur in cancers. biological_process owl:Class GO:0001543 biolink:NamedThing ovarian follicle rupture Disruption of theca cell layer releasing follicular fluid and/or the oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000206 biolink:NamedThing regulation of ribosomal small subunit export from nucleus Any process that modulates the frequency, rate or extent of ribosomal small subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of ribosomal small subunit export from cell nucleus|regulation of ribosomal small subunit transport from nucleus to cytoplasm|regulation of 40S ribosomal subunit export from nucleus|regulation of ribosomal small subunit-nucleus export|regulation of 30S ribosomal subunit export from nucleus|regulation of ribosomal small subunit export out of nucleus mah 2010-10-26T10:54:09Z biological_process owl:Class GO:0071107 biolink:NamedThing response to parathyroid hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to parathyroid hormone stimulus mah 2009-11-12T10:58:45Z biological_process owl:Class GO:0009725 biolink:NamedThing response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to hormone stimulus|growth regulator biological_process owl:Class GO:0009355 biolink:NamedThing DNA polymerase V complex A DNA polymerase complex that contains two UmuD' and one UmuC subunits, and acts in translesion DNA synthesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050525 biolink:NamedThing cutinase activity Catalysis of the reaction: cutin + H2O = cutin monomers. tmpzr1t_l9r_go_relaxed.owl cutin hydrolase activity EC:3.1.1.74|MetaCyc:3.1.1.74-RXN molecular_function owl:Class GO:0052562 biolink:NamedThing suppression by symbiont of host immune response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation by symbiont of host immune response|negative regulation by symbiont of host immune response|down-regulation by symbiont of host immune response|inhibition by symbiont of host immune response|down regulation by symbiont of host immune response|negative regulation by organism of immune response of other organism involved in symbiotic interaction GO:0052561 biological_process owl:Class GO:0120125 biolink:NamedThing PNGase complex A protein complex responsible for the catalysis of the reaction: 4-N-(N-acetyl-D-glucosaminyl)-protein + H2O = N-acetyl-beta-D-glucosaminylamine + peptide L-aspartate. This reaction is the hydrolysis of an N4-(acetyl-beta-D-glucosaminyl)asparagine residue in which the N-acetyl-D-glucosamine residue may be further glycosylated, to yield a (substituted) N-acetyl-beta-D-glucosaminylamine and the peptide containing an aspartic residue. tmpzr1t_l9r_go_relaxed.owl krc 2018-02-12T16:31:57Z cellular_component owl:Class GO:0061210 biolink:NamedThing cell-cell signaling involved in mesonephros development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the mesonephros over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in mesonephros development dph 2010-08-17T03:24:08Z biological_process owl:Class GO:0035661 biolink:NamedThing MyD88-dependent toll-like receptor 2 signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like 2 receptor where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like 2 receptors are pattern recognition receptors that bind microbial pattern motifs to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl MyD88-dependent TLR2 signaling pathway|MyD88-dependent toll-like receptor 2 signalling pathway bf 2011-02-01T10:11:01Z biological_process owl:Class GO:1902008 biolink:NamedThing negative regulation of toxin transport Any process that stops, prevents or reduces the frequency, rate or extent of toxin transport. tmpzr1t_l9r_go_relaxed.owl downregulation of toxin transport|down regulation of toxin transport|down-regulation of toxin transport|inhibition of toxin transport dph 2013-03-22T12:54:00Z biological_process owl:Class GO:0046815 biolink:NamedThing genome retention in viral capsid Any process in which the viral genome is retained within the capsid during genome cleavage and packaging. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901808 biolink:NamedThing capsanthin catabolic process The chemical reactions and pathways resulting in the breakdown of capsanthin. tmpzr1t_l9r_go_relaxed.owl capsanthin breakdown|capsanthin catabolism|capsanthin degradation yaf 2013-01-22T10:21:46Z biological_process owl:Class GO:1901807 biolink:NamedThing capsanthin metabolic process The chemical reactions and pathways involving capsanthin. tmpzr1t_l9r_go_relaxed.owl capsanthin metabolism yaf 2013-01-22T10:21:39Z biological_process owl:Class GO:1902644 biolink:NamedThing tertiary alcohol metabolic process The chemical reactions and pathways involving tertiary alcohol. tmpzr1t_l9r_go_relaxed.owl tertiary alcohol metabolism tt 2014-01-21T17:53:53Z biological_process owl:Class GO:0018175 biolink:NamedThing protein nucleotidylation The addition of a nucleotide to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid nucleotidylation biological_process owl:Class GO:0046818 biolink:NamedThing dense nuclear body A location in the host cell nucleus where viral proteins colocalize late in infection prior to the onset of viral DNA synthesis. More than one site can be present simultaneously. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036279 biolink:NamedThing positive regulation of protein export from nucleus in response to glucose starvation Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm in response to deprivation of glucose. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-11T11:05:20Z biological_process owl:Class GO:0046827 biolink:NamedThing positive regulation of protein export from nucleus Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl upregulation of protein export from nucleus|up regulation of protein export from nucleus|activation of protein export from nucleus|positive regulation of protein-nucleus export|up-regulation of protein export from nucleus|stimulation of protein export from nucleus|positive regulation of protein transport from nucleus to cytoplasm|positive regulation of protein export out of nucleus|positive regulation of protein export from cell nucleus biological_process owl:Class GO:0051664 biolink:NamedThing nuclear pore localization Any process in which nuclear pores are transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of nuclear pore localization|nuclear pore localisation|nuclear pore distribution|positioning of nuclear pores GO:0031081 biological_process owl:Class GO:0001884 biolink:NamedThing pyrimidine nucleoside binding Binding to a pyrimidine nucleoside, a compound consisting of a pyrimidine base linked either to ribose or deoxyribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071064 biolink:NamedThing alphaE-beta7 integrin-E-cadherin complex A protein complex that consists of an alphaE-beta7 integrin complex bound to E-cadherin. tmpzr1t_l9r_go_relaxed.owl ITGAE-ITGB7-CDH1 complex mah 2009-11-03T04:03:37Z cellular_component owl:Class GO:0060502 biolink:NamedThing epithelial cell proliferation involved in lung morphogenesis The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population that contributes to the shaping of the lung. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016875 biolink:NamedThing ligase activity, forming carbon-oxygen bonds Catalysis of the joining of two molecules via a carbon-oxygen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.1.-.- molecular_function owl:Class GO:0007462 biolink:NamedThing R1/R6 cell fate commitment The process in which the R1/R6 photoreceptors commit to their cell fate. R1 and R6 are paired photoreceptors which contribute the outer rhabdomeres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001752 biolink:NamedThing compound eye photoreceptor fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a compound eye photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments. tmpzr1t_l9r_go_relaxed.owl GO:0007459 biological_process owl:Class GO:0035709 biolink:NamedThing memory T cell activation The change in morphology and behavior of a memory T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-02T03:03:02Z biological_process owl:Class GO:0050615 biolink:NamedThing 1,2-dihydrovomilenine reductase activity Catalysis of the reaction: 17-O-acetylnorajmaline + NADP(+) = 1,2-dihydrovomilenine + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 17-O-acetylnorajmaline:NADP+ oxidoreductase activity EC:1.3.1.73|MetaCyc:1.3.1.73-RXN|RHEA:12320|KEGG_REACTION:R05879 molecular_function owl:Class GO:0050529 biolink:NamedThing polyneuridine-aldehyde esterase activity Catalysis of the reaction: H(2)O + polyneuridine aldehyde = 16-epivellosimine + CO(2) + methanol. tmpzr1t_l9r_go_relaxed.owl PNAE activity|polyneuridine aldehyde hydrolase (decarboxylating)|polyneuridine aldehyde esterase activity KEGG_REACTION:R05825|RHEA:17501|EC:3.1.1.78|MetaCyc:3.1.1.78-RXN molecular_function owl:Class GO:0045969 biolink:NamedThing positive regulation of juvenile hormone biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl positive regulation of juvenile hormone formation|up-regulation of juvenile hormone biosynthetic process|positive regulation of juvenile hormone anabolism|up regulation of juvenile hormone biosynthetic process|positive regulation of juvenile hormone synthesis|positive regulation of juvenile hormone biosynthesis|upregulation of juvenile hormone biosynthetic process|stimulation of juvenile hormone biosynthetic process|activation of juvenile hormone biosynthetic process biological_process owl:Class GO:0044539 biolink:NamedThing long-chain fatty acid import into cell The directed movement of a long-chain fatty acid from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acid import|long-chain fatty acid uptake jl 2012-03-21T03:34:04Z biological_process owl:Class GO:0001929 biolink:NamedThing negative regulation of exocyst assembly Any process that stops, prevents, or reduces the rate or extent of exocyst assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of exocyst assembly|downregulation of exocyst assembly|down regulation of exocyst assembly|down-regulation of exocyst assembly biological_process owl:Class GO:0046302 biolink:NamedThing 2-chloro-N-isopropylacetanilide catabolic process The chemical reactions and pathways resulting in the breakdown of 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants. tmpzr1t_l9r_go_relaxed.owl 2-chloro-N-isopropylacetanilide degradation|2-chloro-N-isopropylacetanilide breakdown|2-chloro-N-isopropylacetanilide catabolism biological_process owl:Class GO:1900139 biolink:NamedThing negative regulation of arachidonic acid secretion Any process that stops, prevents or reduces the frequency, rate or extent of arachidonic acid secretion. tmpzr1t_l9r_go_relaxed.owl inhibition of arachidonic acid secretion|down-regulation of arachidonic acid secretion|down regulation of arachidonic acid secretion|downregulation of arachidonic acid secretion rph 2012-03-01T09:21:19Z biological_process owl:Class GO:1901724 biolink:NamedThing positive regulation of cell proliferation involved in kidney development Any process that activates or increases the frequency, rate or extent of cell proliferation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl up regulation of cell proliferation involved in kidney development|up-regulation of cell proliferation involved in kidney development|upregulation of cell proliferation involved in kidney development|activation of cell proliferation involved in kidney development krc 2012-12-27T19:30:40Z biological_process owl:Class GO:0004473 biolink:NamedThing malate dehydrogenase (decarboxylating) (NADP+) activity Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADP-linked decarboxylating malic enzyme|NADP-malic enzyme activity|NADP-specific malic enzyme|'malic' enzyme|(S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|malate dehydrogenase (decarboxylating, NADP)|NADP-specific malate dehydrogenase activity|malate dehydrogenase (NADP, decarboxylating)|L-malate:NADP oxidoreductase activity Reactome:R-HSA-9012036|RHEA:18253|Reactome:R-HSA-9012349|KEGG_REACTION:R00216|MetaCyc:MALIC-NADP-RXN|EC:1.1.1.40 For decarboxylation of oxaloacetate (the second substrate listed in EC:1.1.1.40), see 'oxaloacetate decarboxylase activity ; GO:0008948'. molecular_function owl:Class GO:0004470 biolink:NamedThing malic enzyme activity Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate. tmpzr1t_l9r_go_relaxed.owl pyruvic-malic carboxylase activity molecular_function owl:Class GO:1902784 biolink:NamedThing response to undecane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an undecane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T13:39:06Z biological_process owl:Class GO:0000440 biolink:NamedThing core TFIIH complex portion of NEF3 complex The core TFIIH complex when it is part of the nucleotide-excision repair factor 3 (NEF3). tmpzr1t_l9r_go_relaxed.owl SSL2-core TFIIH complex portion of NEF3 complex GO:0000442 cellular_component owl:Class GO:0044571 biolink:NamedThing [2Fe-2S] cluster assembly The incorporation of two iron atoms and two sulfur atoms into an iron-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl 2Fe-2S cluster assembly|[2Fe-2S] cluster biosynthetic process jl 2012-04-18T03:06:30Z biological_process owl:Class GO:0097161 biolink:NamedThing DH domain binding Binding to a DH (Dbl homology) domain of a protein. The DH domain contains three structurally conserved regions separated by more variable regions. It is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH (pleckstrin homology) junction site, constitute the Rho GTPase interacting pocket. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-27T10:06:09Z molecular_function owl:Class GO:1904290 biolink:NamedThing negative regulation of mitotic DNA damage checkpoint Any process that stops, prevents or reduces the frequency, rate or extent of mitotic DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl downregulation of mitotic DNA damage checkpoint|down regulation of mitotic DNA damage checkpoint|down-regulation of mitotic DNA damage checkpoint|inhibition of mitotic DNA damage checkpoint kmv 2015-06-09T13:03:17Z biological_process owl:Class GO:1905182 biolink:NamedThing positive regulation of urease activity Any process that activates or increases the frequency, rate or extent of urease activity. tmpzr1t_l9r_go_relaxed.owl activation of urea amidohydrolase activity|upregulation of urea amidohydrolase activity|up-regulation of urease activity|up-regulation of urea amidohydrolase activity|up regulation of urease activity|upregulation of urease activity|up regulation of urea amidohydrolase activity|positive regulation of urea amidohydrolase activity|activation of urease activity tb 2016-05-09T23:16:03Z biological_process owl:Class GO:0097584 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase Pmt5p-Pmt2p dimer complex A protein dimer complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity and, in S. cerevisiae, is composed of Pmt5p-Pmt2p. tmpzr1t_l9r_go_relaxed.owl Pmt5p-Pmt2p complex pr 2014-03-02T18:17:22Z cellular_component owl:Class GO:0102067 biolink:NamedThing geranylgeranyl diphosphate reductase activity Catalysis of the reaction: (E)-3,7,11,15-tetramethylhexadec-2-en-1-yl diphosphate + 3 NADP <=> 2-trans,6-trans,10-trans-geranylgeranyl diphosphate + 3 NADPH + 3 H+. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.83|RHEA:26229|MetaCyc:RXN-10625 molecular_function owl:Class GO:0005094 biolink:NamedThing Rho GDP-dissociation inhibitor activity Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0014825 biolink:NamedThing stomach fundus smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the fundus of stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fundus is the portion of the stomach that lies above the cardiac notch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014847 biolink:NamedThing proximal stomach smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the proximal stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The proximal stomach, composed of the fundus and upper body, shows low frequency, sustained tonic contractions that are responsible for generating a basal pressure within the stomach. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003196 biolink:NamedThing ventriculo bulbo valve formation The developmental process pertaining to the initial formation of the ventriculo bulbo valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:16:02Z biological_process owl:Class GO:0035667 biolink:NamedThing TRIF-dependent toll-like receptor 4 signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like 4 receptor where the TRIF adaptor mediates transduction of the signal. Toll-like 4 receptors are pattern recognition receptors that bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl TRIF-dependent toll-like receptor 4 signalling pathway|Toll/IL-1 receptor (TIR) domain-containing adaptor-dependent TLR4 signaling pathway|TRIF-dependent TLR4 signaling pathway bf 2011-02-01T02:37:25Z biological_process owl:Class GO:0046046 biolink:NamedThing TTP metabolic process The chemical reactions and pathways involving TTP, ribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl TTP metabolism biological_process owl:Class GO:1904999 biolink:NamedThing positive regulation of leukocyte adhesion to arterial endothelial cell Any process that activates or increases the frequency, rate or extent of leukocyte adhesion to arterial endothelial cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of leukocyte adhesion to arterial endothelial cell|up regulation of leukocyte adhesion to arterial endothelial cell|upregulation of leukocyte adhesion to arterial endothelial cell|activation of leukocyte adhesion to arterial endothelial cell bc 2016-03-01T11:05:05Z biological_process owl:Class GO:1904997 biolink:NamedThing regulation of leukocyte adhesion to arterial endothelial cell Any process that modulates the frequency, rate or extent of leukocyte adhesion to arterial endothelial cell. tmpzr1t_l9r_go_relaxed.owl bc 2016-03-01T11:04:49Z biological_process owl:Class GO:0051826 biolink:NamedThing negative regulation of synapse structural plasticity Any process that stops, prevents, or reduces the frequency, rate or extent of synapse structural plasticity. tmpzr1t_l9r_go_relaxed.owl downregulation of synapse structural plasticity|inhibition of synapse structural plasticity|down regulation of synapse structural plasticity|down-regulation of synapse structural plasticity biological_process owl:Class GO:0051823 biolink:NamedThing regulation of synapse structural plasticity Any process that modulates the frequency, rate or extent of synapse structural plasticity. Synapse structural plasticity is a type of cytoskeletal remodeling; this remodeling is induced by stimuli that can lead to long term potentiation and it can be activity-dependent or -independent. Examples of cytoskeletal changes include the formation of new spines and increase in spine size; this can be accompanied by the insertion of greater numbers of glutamate (or other neurotransmitter) receptors into the post-synaptic membrane. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic structural plasticity biological_process owl:Class GO:0021736 biolink:NamedThing globose nucleus development The process whose specific outcome is the progression of the globose nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005046 biolink:NamedThing KDEL sequence binding Binding to a KDEL sequence, the C terminus tetrapeptide sequence Lys-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl KDEL receptor activity molecular_function owl:Class GO:0046923 biolink:NamedThing ER retention sequence binding Binding to an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum retention sequence binding molecular_function owl:Class GO:1900199 biolink:NamedThing positive regulation of protein export from nucleus during meiotic anaphase II Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm, during anaphase occurring as part of meiosis II. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein export from nucleus involved in meiotic anaphase II pr 2012-03-20T06:35:19Z biological_process owl:Class GO:0060258 biolink:NamedThing negative regulation of filamentous growth Any process that decreases the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009264 biolink:NamedThing deoxyribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleotide degradation|deoxyribonucleotide catabolism|deoxyribonucleotide breakdown biological_process owl:Class GO:1990595 biolink:NamedThing mast cell secretagogue receptor activity Combining with basic secretagogues to initiate pseudo-allergic reactions in mast cells. tmpzr1t_l9r_go_relaxed.owl sp 2014-12-22T10:04:43Z molecular_function owl:Class GO:2001313 biolink:NamedThing UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process The chemical reactions and pathways involving a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose. tmpzr1t_l9r_go_relaxed.owl UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolism pr 2012-03-22T01:19:54Z biological_process owl:Class GO:0098761 biolink:NamedThing cellular response to interleukin-7 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-7 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-7 biological_process owl:Class GO:0098760 biolink:NamedThing response to interleukin-7 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-7 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-7 biological_process owl:Class GO:0043840 biolink:NamedThing branched-chain amino acid:2-keto-4-methylthiobutyrate aminotransferase activity Catalysis of the reaction: 2-keto-4-methylthiobutyrate + L-phenylalanine = phenylpyruvate + L-methionine. tmpzr1t_l9r_go_relaxed.owl branched chain amino acid:2-keto-4-methylthiobutyrate aminotransferase activity|branched-chain-amino-acid:2-keto-4-methylthiobutyrate aminotransferase activity|branched-chain amino acid aminotransferase|BCAT MetaCyc:RXN-7708 molecular_function owl:Class GO:2000058 biolink:NamedThing regulation of ubiquitin-dependent protein catabolic process Any process that modulates the frequency, rate or extent of ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolic process|regulation of protein ubiquitination during ubiquitin-dependent protein catabolism|regulation of protein degradation tagging activity|regulation of protein ubiquitylation during ubiquitin-dependent protein catabolic process|regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein breakdown|regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolism|regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism|regulation of protein ubiquitylation during ubiquitin-dependent protein catabolism|regulation of protein ubiquitination during ubiquitin-dependent protein breakdown|regulation of protein ubiquitination during ubiquitin-dependent protein degradation|regulation of protein ubiquitination during ubiquitin-dependent protein catabolic process|regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolic process|regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein degradation jl 2010-08-20T01:23:46Z biological_process owl:Class GO:0002466 biolink:NamedThing peripheral tolerance induction to self antigen Tolerance induction to self antigens in the peripheral lymphoid tissues: blood, lymph nodes, spleen, and mucosal-associated lymphoid tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000172 biolink:NamedThing regulation of branching morphogenesis of a nerve Any process that modulates the frequency, rate or extent of branching morphogenesis of a nerve. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-07T12:07:54Z biological_process owl:Class GO:0001704 biolink:NamedThing formation of primary germ layer The formation of the ectoderm, mesoderm and endoderm during gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048587 biolink:NamedThing regulation of short-day photoperiodism, flowering Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039522 biolink:NamedThing suppression by virus of host mRNA export from nucleus Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of movement of mRNA from the nucleus to the cytoplasm in the host organism. tmpzr1t_l9r_go_relaxed.owl suppression of host mRNA nuclear export by virus|inhibition by virus of host mRNA nuclear export|inhibition of host mRNA nuclear export by virus|negative regulation by virus of host mRNA nuclear export VZ:902 bf 2011-06-22T04:34:14Z biological_process owl:Class GO:0002350 biolink:NamedThing peripheral B cell positive selection Any process leading to positive selection of B cells in the periphery. Positive selection is the process in which B or T cells are selected to survive based on signaling through their antigen receptors. tmpzr1t_l9r_go_relaxed.owl peripheral B lymphocyte positive selection|peripheral B-cell positive selection|peripheral B-lymphocyte positive selection biological_process owl:Class GO:0002231 biolink:NamedThing detection of oomycetes The series of events in which a stimulus from an oomycetes is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045467 biolink:NamedThing R7 cell development The process whose specific outcome is the progression of the R7 photoreceptor over time, from its formation to the mature structure. The R7 photoreceptor is the last photoreceptor to develop in the ommatidium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003021 biolink:NamedThing detection of increased carbon dioxide by chemoreceptor signaling The process in which information about the levels of carbon dioxide are received and are converted to a molecular signal by chemoreceptors in the carotid bodies and the aortic bodies. tmpzr1t_l9r_go_relaxed.owl detection of increased carbon dioxide by chemoreceptor signalling biological_process owl:Class GO:0018185 biolink:NamedThing poly-N-methyl-propylamination The modification of peptidyl-lysine by the addition of an N6-propylamino and of propylmethylamino units, forming N6-(propylamino-poly(propylmethylamino)-propyldimethylamine)-L-lysine, typical of the silicate binding protein silaffin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0278 biological_process owl:Class GO:0071470 biolink:NamedThing cellular response to osmotic stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl cellular osmotic response|cellular osmotic stress response mah 2009-12-18T11:45:33Z biological_process owl:Class GO:0106088 biolink:NamedThing regulation of cell adhesion involved in sprouting angiogenesis Any process that modulates the frequency, rate or extent of cell adhesion involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl hjd 2018-01-22T18:24:12Z biological_process owl:Class GO:0039667 biolink:NamedThing viral entry into host cell via pilus retraction The uptake of a virus or viral genetic material into a host cell which occurs through retraction of a virion-bound pilus. tmpzr1t_l9r_go_relaxed.owl This method of entry into the cell differs between viruses; filamentous bacteriophages have rod-shaped virions which attach to the tip of the pilus; after retraction of the pilus with the virion attached, the genome can enter the host cell through the pilus basal pore. For icosahedral viruses, retraction of the pilus brings the virus in contact with the cell membrane and the genome can enter the cell via membrane fusion or genome injection. In GO, viral entry begins after viral attachment; for pilus-attachment proteins see instead: viral attachment to host cell pilus ; GO:0039666. bf 2013-09-04T14:32:19Z biological_process owl:Class GO:0007159 biolink:NamedThing leukocyte cell-cell adhesion The attachment of a leukocyte to another cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl leukocyte cell adhesion|leukocyte adhesion biological_process owl:Class GO:0052595 biolink:NamedThing aliphatic-amine oxidase activity Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl aliphatic-amine:oxygen oxidoreductase(deaminating) activity RHEA:16153|MetaCyc:AMINEOXID-RXN|EC:1.4.3.21 molecular_function owl:Class GO:0050973 biolink:NamedThing detection of mechanical stimulus involved in equilibrioception The series of events involved in equilibrioception in which a mechanical stimulus is received and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears. tmpzr1t_l9r_go_relaxed.owl sensory detection of mechanical stimulus during equilibrioception|sensory transduction of mechanical stimulus during equilibrioception|equilibrioception, detection of mechanical stimulus|equilibrioception, sensory detection of mechanical stimulus|equilibrioception, sensory transduction of mechanical stimulus biological_process owl:Class GO:0043952 biolink:NamedThing protein transport by the Sec complex The process in which unfolded proteins are transported across the cytoplasmic membrane in Gram-positive and Gram-negative bacteria by the Sec complex, in a process involving proteolytic cleavage of an N-terminal signal peptide. tmpzr1t_l9r_go_relaxed.owl protein translocation by the Sec complex|protein secretion by the Sec complex Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular structure term 'cell envelope Sec protein transport complex ; GO:0031522'. For proteins involved in bacterial type II secretion across the outer membrane, consider annotating to 'protein secretion by the type II secretion system ; GO:0015628'. For proteins involved in Sec-complex dependent translocation into the eukaryotic endoplasmic reticulum, consider annotating to 'SRP-dependent cotranslational protein targeting to membrane, translocation ; GO:0006616'. Note that this term is used for annotation of proteins that compose the transport complex but not the proteins being transported. biological_process owl:Class GO:0018035 biolink:NamedThing C-terminal peptidyl-arginine amidation The formation of a C-terminal peptidyl-arginine amide by hydrolysis and oxidation of an interior Arg-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0082 biological_process owl:Class GO:0018229 biolink:NamedThing peptidyl-L-cysteine methyl ester biosynthetic process from peptidyl-cysteine The modification of a C-terminal peptidyl-cysteine to form peptidyl-L-cysteine methyl ester. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-cysteine methyl ester anabolism from peptidyl-cysteine|peptidyl-L-cysteine methyl ester synthesis from peptidyl-cysteine|peptidyl-L-cysteine methyl ester formation from peptidyl-cysteine RESID:AA0105 biological_process owl:Class GO:1902721 biolink:NamedThing negative regulation of prolactin secretion Any process that stops, prevents or reduces the frequency, rate or extent of prolactin secretion. tmpzr1t_l9r_go_relaxed.owl down-regulation of prolactin secretion|downregulation of prolactin secretion|inhibition of prolactin secretion|down regulation of prolactin secretion mr 2014-02-24T16:09:28Z biological_process owl:Class GO:0019321 biolink:NamedThing pentose metabolic process The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentose metabolism biological_process owl:Class GO:0106322 biolink:NamedThing S-(hydroxymethyl)glutathione dehydrogenase NAD activity Catalysis of the reaction: S-(hydroxymethyl)glutathione + NAD+ = S-formylglutathione + NADH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.284|RHEA:19985 hjd 2020-09-23T15:26:40Z molecular_function owl:Class GO:1902840 biolink:NamedThing positive regulation of nuclear migration along microtubule Any process that activates or increases the frequency, rate or extent of nuclear migration along microtubule. tmpzr1t_l9r_go_relaxed.owl positive regulation of microtubule-dependent nucleus positioning|positive regulation of transport of nucleus by microtubules|activation of microtubule-dependent nuclear positioning|positive regulation of microtubule cytoskeleton-dependent nucleus positioning|positive regulation of nuclear migration, microtubule-mediated|activation of microtubule-dependent nucleus positioning|positive regulation of microtubule cytoskeleton-dependent nuclear positioning|up-regulation of microtubule-dependent nuclear positioning|activation of microtubule cytoskeleton-dependent nuclear positioning|up regulation of transport of nucleus by microtubules|activation of transport of nucleus, microtubule-mediated|activation of nuclear migration along microtubule|up-regulation of microtubule-dependent nucleus positioning|up regulation of microtubule cytoskeleton-dependent nucleus positioning|up regulation of nuclear migration along microtubule|activation of transport of nucleus by microtubules|upregulation of microtubule-dependent nuclear positioning|up-regulation of transport of nucleus by microtubules|up-regulation of microtubule-mediated nuclear migration|up-regulation of microtubule cytoskeleton-dependent nucleus positioning|upregulation of microtubule-dependent nucleus positioning|activation of microtubule cytoskeleton-dependent nucleus positioning|up-regulation of nuclear migration along microtubule|up regulation of nuclear migration, microtubule-mediated|up-regulation of nuclear migration, microtubule-mediated|upregulation of microtubule cytoskeleton-dependent nuclear positioning|up regulation of microtubule-mediated nuclear migration|positive regulation of transport of nucleus, microtubule-mediated|upregulation of microtubule-mediated nuclear migration|up regulation of transport of nucleus, microtubule-mediated|upregulation of transport of nucleus, microtubule-mediated|up regulation of microtubule-dependent nuclear positioning|upregulation of microtubule cytoskeleton-dependent nucleus positioning|activation of microtubule-mediated nuclear migration|positive regulation of microtubule-dependent nuclear positioning|up-regulation of microtubule cytoskeleton-dependent nuclear positioning|upregulation of nuclear migration, microtubule-mediated|positive regulation of microtubule-mediated nuclear migration|activation of nuclear migration, microtubule-mediated|up regulation of microtubule cytoskeleton-dependent nuclear positioning|up regulation of microtubule-dependent nucleus positioning|up-regulation of transport of nucleus, microtubule-mediated|upregulation of transport of nucleus by microtubules|upregulation of nuclear migration along microtubule vw 2014-04-01T13:50:35Z biological_process owl:Class GO:0090504 biolink:NamedThing epiboly The expansion of one cell sheet over other cells or yolk. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T12:29:52Z biological_process owl:Class GO:0043748 biolink:NamedThing O-succinylbenzoate synthase activity Catalysis of the reaction: 2-succinylbenzoate + H2O = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.113 molecular_function owl:Class GO:0034699 biolink:NamedThing response to luteinizing hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a luteinizing hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to luteinizing hormone stimulus biological_process owl:Class GO:0015745 biolink:NamedThing tartrate transmembrane transport The process in which tartrate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl tartrate transport biological_process owl:Class GO:1905943 biolink:NamedThing negative regulation of formation of growth cone in injured axon Any process that stops, prevents or reduces the frequency, rate or extent of formation of growth cone in injured axon. tmpzr1t_l9r_go_relaxed.owl down-regulation of formation of growth cone in injured axon|inhibition of formation of growth cone in injured axon|downregulation of formation of growth cone in injured axon|down regulation of formation of growth cone in injured axon rz 2017-02-13T09:09:13Z biological_process owl:Class GO:0010952 biolink:NamedThing positive regulation of peptidase activity Any process that increases the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T11:54:32Z biological_process owl:Class GO:1903086 biolink:NamedThing negative regulation of sinapate ester biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of sinapate ester biosynthesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of sinapate ester biosynthetic process|inhibition of sinapate ester formation|inhibition of sinapate ester biosynthesis|inhibition of sinapate ester synthesis|downregulation of sinapate ester formation|negative regulation of sinapate ester formation|inhibition of sinapate ester biosynthetic process|down-regulation of sinapate ester biosynthesis|down regulation of sinapate ester anabolism|negative regulation of sinapate ester anabolism|negative regulation of sinapate ester synthesis|downregulation of sinapate ester synthesis|downregulation of sinapate ester biosynthetic process|downregulation of sinapate ester anabolism|down-regulation of sinapate ester anabolism|down regulation of sinapate ester biosynthesis|down-regulation of sinapate ester synthesis|inhibition of sinapate ester anabolism|negative regulation of sinapate ester biosynthesis|down regulation of sinapate ester formation|down regulation of sinapate ester synthesis|down-regulation of sinapate ester formation|down regulation of sinapate ester biosynthetic process|downregulation of sinapate ester biosynthesis tb 2014-05-30T22:00:18Z biological_process owl:Class GO:0140580 biolink:NamedThing mitochondrion autophagosome adaptor activity The binding activity of a molecule that brings together a mitochondrial membrane and an autophagosome during mitophagy. tmpzr1t_l9r_go_relaxed.owl mitophagy receptor https://github.com/geneontology/go-ontology/issues/20668 pg 2021-01-18T11:03:49Z molecular_function owl:Class GO:0042059 biolink:NamedThing negative regulation of epidermal growth factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of EGF receptor signaling pathway|negative regulation of EGF receptor signalling pathway|inhibition of epidermal growth factor receptor signaling pathway|down-regulation of epidermal growth factor receptor signaling pathway|down regulation of epidermal growth factor receptor signaling pathway|downregulation of epidermal growth factor receptor signaling pathway|negative regulation of EGFR signaling pathway biological_process owl:Class GO:0042058 biolink:NamedThing regulation of epidermal growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl regulation of EGF receptor signaling pathway|regulation of EGF receptor signalling pathway|regulation of EGFR signaling pathway biological_process owl:Class GO:0140479 biolink:NamedThing ergothioneine biosynthesis from histidine via hercynylcysteine sulfoxide synthase A biosynthetic process that results in the formation of ergothioneine from histidine via a set of steps including the hercynylcysteine sulfoxide synthase reaction, which converts N-alpha,N-alpha,N-alpha-trimethyl-L-histidine directly to hercynylcysteine sulfoxide. tmpzr1t_l9r_go_relaxed.owl pg 2020-06-25T09:58:21Z biological_process owl:Class GO:0047227 biolink:NamedThing indolylacetyl-myo-inositol galactosyltransferase activity Catalysis of the reaction: 1L-1-O-(indol-3-yl)acetyl-myo-inositol + UDP-D-galactose = 5-O-(indol-3-ylacetyl)-myo-inositol D-galactoside + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:(indol-3-yl)acetyl-myo-inositol 5-O-D-galactosyltransferase activity|uridine diphosphogalactose-indolylacetylinositol galactosyltransferase activity|indol-3-ylacetyl-myo-inositol galactoside synthase activity|UDP-galactose:indol-3-ylacetyl-myo-inositol 5-O-D-galactosyltransferase activity MetaCyc:2.4.1.156-RXN|KEGG_REACTION:R04334|RHEA:21148|EC:2.4.1.156 molecular_function owl:Class GO:2000238 biolink:NamedThing regulation of tRNA export from nucleus Any process that modulates the frequency, rate or extent of tRNA export from nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of tRNA transport from nucleus to cytoplasm|regulation of tRNA-nucleus export|regulation of tRNA export from cell nucleus|regulation of tRNA export out of nucleus mah 2010-11-10T12:39:33Z biological_process owl:Class GO:0031408 biolink:NamedThing oxylipin biosynthetic process The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl oxylipin synthesis|oxylipin biosynthesis|oxylipin formation|oxylipin anabolism biological_process owl:Class GO:0047366 biolink:NamedThing quercetin-3-sulfate 4'-sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + quercetin 3-sulfate = adenosine 3',5'-diphosphate + H(+) + quercetin 3,4'-disulfate. tmpzr1t_l9r_go_relaxed.owl quercetin-3-sulphate 4'-sulphotransferase activity|flavonol 4'-sulfotransferase activity|3'-phosphoadenylyl-sulfate:quercetin-3-sulfate 4'-sulfotransferase activity|PAPS:flavonol 3-sulfate 4'-sulfotransferase activity MetaCyc:2.8.2.27-RXN|KEGG_REACTION:R02633|RHEA:17205|EC:2.8.2.27 molecular_function owl:Class GO:1900297 biolink:NamedThing regulation of hexasaccharide transport Any process that modulates the frequency, rate or extent of hexasaccharide transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:44:31Z biological_process owl:Class GO:0090260 biolink:NamedThing negative regulation of retinal ganglion cell axon guidance Any process that decreases the frequency, rate, or extent of retinal ganglion cell axon guidance, the process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl axon growth cone collapse Note that growth cone collapse has been observed only in assays performed in vitro. tb 2010-02-03T04:13:59Z biological_process owl:Class GO:1903968 biolink:NamedThing cellular response to micafungin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a micafungin stimulus. tmpzr1t_l9r_go_relaxed.owl al 2015-02-27T09:57:44Z biological_process owl:Class GO:1904573 biolink:NamedThing regulation of selenocysteine insertion sequence binding Any process that modulates the frequency, rate or extent of selenocysteine insertion sequence binding. tmpzr1t_l9r_go_relaxed.owl regulation of SECIS binding sl 2015-08-19T17:51:09Z biological_process owl:Class GO:0003357 biolink:NamedThing noradrenergic neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of an noradrenergic neuron, a neuron that secretes noradrenaline. tmpzr1t_l9r_go_relaxed.owl norepinephrine secreting neuron differentiation dph 2009-12-03T10:34:30Z biological_process owl:Class GO:0019303 biolink:NamedThing D-ribose catabolic process The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose). tmpzr1t_l9r_go_relaxed.owl D-ribose degradation|D-ribose catabolism|D-ribose breakdown MetaCyc:RIBOKIN-PWY biological_process owl:Class GO:0006014 biolink:NamedThing D-ribose metabolic process The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12. tmpzr1t_l9r_go_relaxed.owl D-ribose metabolism biological_process owl:Class GO:0140636 biolink:NamedThing copper import into the mitochondrion The process in which copper is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21294 pg 2021-04-14T09:59:21Z biological_process owl:Class GO:1905355 biolink:NamedThing spine apparatus assembly The aggregation, arrangement and bonding together of a set of components to form a spine apparatus. tmpzr1t_l9r_go_relaxed.owl dense material formation|spine apparatus formation|dense material assembly bf 2016-08-09T10:12:29Z biological_process owl:Class GO:1902850 biolink:NamedThing microtubule cytoskeleton organization involved in mitosis Any microtubule cytoskeleton organization that is involved in mitosis. tmpzr1t_l9r_go_relaxed.owl microtubule cytoskeleton organisation involved in mitosis|microtubule cytoskeleton organization and biogenesis involved in mitosis|microtubule dynamics involved in mitosis vw 2014-04-02T14:19:38Z biological_process owl:Class GO:0140710 biolink:NamedThing regulation of Frizzled Nuclear Import pathway Any process that modulates the frequency, rate or extent of a Frizzled Nuclear Import pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Frizzled Nuclear Import Wnt Pathway|regulation of FNI https://github.com/geneontology/go-ontology/issues/21483 pg 2021-09-08T09:14:01Z biological_process owl:Class GO:2001083 biolink:NamedThing alpha-D-glucan binding Binding to alpha-D-glucan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:26:14Z molecular_function owl:Class GO:1901259 biolink:NamedThing chloroplast rRNA processing Any rRNA processing that takes place in chloroplast. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-10T17:43:19Z biological_process owl:Class GO:0000806 biolink:NamedThing Y chromosome The sex chromosome present in males of species in which the male is the heterogametic sex; generally, the sex chromosome that pairs with the X chromosome in the heterogametic sex. The Y chromosome is absent from the cells of females and present in one copy in the somatic cells of males. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Y_chromosome cellular_component owl:Class GO:0021635 biolink:NamedThing trigeminal nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the trigeminal nerve to attain its fully functional state. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae. tmpzr1t_l9r_go_relaxed.owl CN V maturation biological_process owl:Class GO:0033001 biolink:NamedThing Fc-gamma receptor III complex A protein complex composed of an Fc-gamma RIII alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-epsilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgG. tmpzr1t_l9r_go_relaxed.owl FcgRIII complex|IgG receptor complex|immunoglobulin G receptor complex cellular_component owl:Class GO:0032997 biolink:NamedThing Fc receptor complex A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin. tmpzr1t_l9r_go_relaxed.owl FcR complex|immunoglobulin receptor complex|Fc-receptor complex cellular_component owl:Class GO:0060495 biolink:NamedThing cell-cell signaling involved in lung development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the lung, from its initial state to the mature structure. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in lung development biological_process owl:Class GO:1904910 biolink:NamedThing regulation of establishment of RNA localization to telomere Any process that modulates the frequency, rate or extent of establishment of RNA localization to telomere. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of RNA localisation to telomere rph 2016-01-19T10:34:21Z biological_process owl:Class GO:2000192 biolink:NamedThing negative regulation of fatty acid transport Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid transport. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-18T10:37:15Z biological_process owl:Class GO:0071390 biolink:NamedThing cellular response to ecdysone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ecdysone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:03:57Z biological_process owl:Class GO:0003366 biolink:NamedThing cell-matrix adhesion involved in ameboidal cell migration The binding of a cell to the extracellular matrix that contributes to the directed movement of an ameboid cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T04:54:33Z biological_process owl:Class GO:0035255 biolink:NamedThing ionotropic glutamate receptor binding Binding to an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044193 biolink:NamedThing host cell mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the host cell mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T04:18:44Z cellular_component owl:Class GO:0021955 biolink:NamedThing central nervous system neuron axonogenesis Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050163 biolink:NamedThing oxaloacetate tautomerase activity Catalysis of the reaction: oxaloacetate = enol-oxaloacetate. tmpzr1t_l9r_go_relaxed.owl oxaloacetate keto-enol tautomerase activity|oxaloacetate keto-enol-isomerase activity|oxalacetic keto-enol isomerase activity KEGG_REACTION:R00363|EC:5.3.2.2|RHEA:16021|MetaCyc:OXALOACETATE-TAUTOMERASE-RXN molecular_function owl:Class GO:0016862 biolink:NamedThing intramolecular oxidoreductase activity, interconverting keto- and enol-groups Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor, which is a keto- or an enol-group, are the same molecule, and no oxidized product appears. tmpzr1t_l9r_go_relaxed.owl intramolecular isomerase activity, interconverting keto- and enol-groups EC:5.3.2.- molecular_function owl:Class GO:0003257 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T01:07:25Z biological_process owl:Class GO:1902042 biolink:NamedThing negative regulation of extrinsic apoptotic signaling pathway via death domain receptors Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors. tmpzr1t_l9r_go_relaxed.owl downregulation of death receptor-mediated apoptosis|down regulation of extrinsic apoptotic signaling pathway via death domain receptors|inhibition of extrinsic apoptotic signaling pathway via death domain receptors|down regulation of death receptor-mediated apoptosis|inhibition of death receptor-mediated apoptosis|down-regulation of death receptor-mediated apoptosis|downregulation of extrinsic apoptotic signaling pathway via death domain receptors|negative regulation of death receptor-mediated apoptosis|down-regulation of extrinsic apoptotic signaling pathway via death domain receptors lb 2013-04-03T07:17:04Z biological_process owl:Class GO:2000914 biolink:NamedThing positive regulation of galactoglucomannan catabolic process Any process that activates or increases the frequency, rate or extent of galactoglucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of galactoglucomannan catabolism tt 2011-07-29T07:51:50Z biological_process owl:Class GO:0103011 biolink:NamedThing mannosylfructose-phosphate synthase activity Catalysis of the reaction: GDP-alpha-D-mannose + beta-D-fructofuranose 6-phosphate <=> mannosylfructose-phosphate + GDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.246|MetaCyc:RXN-9935|RHEA:26039 molecular_function owl:Class GO:0098971 biolink:NamedThing anterograde dendritic transport of neurotransmitter receptor complex The directed movement of a neurotransmitter receptor complex along microtubules in nerve cell dendrites towards the postsynapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018134 biolink:NamedThing peptide cross-linking via glycine oxazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl glycine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0240 biological_process owl:Class GO:0050731 biolink:NamedThing positive regulation of peptidyl-tyrosine phosphorylation Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl upregulation of peptidyl-tyrosine phosphorylation|activation of peptidyl-tyrosine phosphorylation|stimulation of peptidyl-tyrosine phosphorylation|up regulation of peptidyl-tyrosine phosphorylation|up-regulation of peptidyl-tyrosine phosphorylation biological_process owl:Class GO:0090015 biolink:NamedThing positive regulation of leaflet formation by auxin mediated signaling pathway Any process that increases the frequency, rate or extent of leaflet formation as a result of the series of molecular signals generated in response to detection of auxin. tmpzr1t_l9r_go_relaxed.owl positive regulation of leaflet formation by auxin mediated signalling pathway tb 2009-07-29T11:18:45Z biological_process owl:Class GO:0009734 biolink:NamedThing auxin-activated signaling pathway A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl auxin signal transduction|auxin signaling|auxin mediated signaling pathway|auxin-regulated transcription|auxin mediated signalling biological_process owl:Class GO:0032117 biolink:NamedThing horsetail-astral microtubule array An array of astral microtubules that emanates from the spindle pole body during meiosis and facilitates horsetail nuclear movement. tmpzr1t_l9r_go_relaxed.owl HAA cellular_component owl:Class GO:1902085 biolink:NamedThing fumagillin catabolic process The chemical reactions and pathways resulting in the breakdown of fumagillin. tmpzr1t_l9r_go_relaxed.owl fumagillin breakdown|fumagillin degradation|fumagillin catabolism di 2013-04-25T14:00:45Z biological_process owl:Class GO:0010957 biolink:NamedThing negative regulation of vitamin D biosynthetic process Any process that decreases the rate, frequency or extent of a vitamin D biosynthetic process. Vitamin D biosynthesis is the chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl tb 2009-05-06T11:25:12Z biological_process owl:Class GO:0044583 biolink:NamedThing cellotriose binding Binding to cellotriose. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-24T04:48:01Z molecular_function owl:Class GO:0048031 biolink:NamedThing trisaccharide binding Binding to a trisaccharide. Trisaccharides are sugars composed of three monosaccharide units. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903765 biolink:NamedThing negative regulation of potassium ion export across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of potassium ion export across plasma membrane|downregulation of potassium ion export across plasma membrane|inhibition of potassium ion export across plasma membrane|down regulation of potassium ion export across plasma membrane|inhibition of potassium ion export|negative regulation of potassium ion export|down-regulation of potassium ion export|inhibition of potassium export|downregulation of potassium export|down-regulation of potassium export|downregulation of potassium ion export|negative regulation of potassium export|down regulation of potassium export|down regulation of potassium ion export rl 2013-07-17T16:40:02Z GO:1902303 biological_process owl:Class GO:1901380 biolink:NamedThing negative regulation of potassium ion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl down regulation of potassium ion transmembrane transport|negative regulation of potassium ion membrane transport|inhibition of potassium ion transmembrane transport|down-regulation of potassium ion transmembrane transport|downregulation of potassium ion transmembrane transport rl 2012-09-28T15:59:08Z biological_process owl:Class GO:0046218 biolink:NamedThing indolalkylamine catabolic process The chemical reactions and pathways resulting in the breakdown of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. tmpzr1t_l9r_go_relaxed.owl indolalkylamine breakdown|indolalkylamine catabolism|indolalkylamine degradation biological_process owl:Class GO:0006586 biolink:NamedThing indolalkylamine metabolic process The chemical reactions and pathways involving indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. tmpzr1t_l9r_go_relaxed.owl indolamine metabolic process|indolamine metabolism|indolalkylamine metabolism biological_process owl:Class GO:0102185 biolink:NamedThing 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NADH(2-) + O2 + H+ <=> 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NAD(1-) + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11947 molecular_function owl:Class GO:0140403 biolink:NamedThing effector-mediated suppression of host innate immune response A process mediated by a molecule secreted by a symbiont that results in the suppression of a host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl effector-triggered suppression of host immune innate response by symbiont|effector triggered suppression of host immune innate response by symbiont|effector-mediated suppression of host immune innate response by symbiont|effector-mediated suppression of host innate immunity|effector dependent suppression of host immune innate response by symbiont|effector-mediated suppression of host innate immune response by symbiont|effector-dependent suppression of host immune innate response by symbiont pg 2019-12-05T11:34:55Z biological_process owl:Class GO:0043632 biolink:NamedThing modification-dependent macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of a macromolecule, initiated by covalent modification of the target molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060176 biolink:NamedThing regulation of aggregation involved in sorocarp development Any process that modulates the frequency, rate or extent of aggregation during sorocarp development. Aggregation involved in sorocarp development is the process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005384 biolink:NamedThing manganese ion transmembrane transporter activity Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:28699|Reactome:R-HSA-8959798 molecular_function owl:Class GO:0043201 biolink:NamedThing response to leucine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903112 biolink:NamedThing positive regulation of single-strand break repair via homologous recombination Any process that activates or increases the frequency, rate or extent of single-strand break repair via homologous recombination. tmpzr1t_l9r_go_relaxed.owl upregulation of single-strand break repair via homologous recombination|up regulation of single-strand break repair via homologous recombination|activation of single-strand break repair via homologous recombination|up-regulation of single-strand break repair via homologous recombination pr 2014-06-09T12:11:38Z biological_process owl:Class GO:1903518 biolink:NamedThing positive regulation of single strand break repair Any process that activates or increases the frequency, rate or extent of single strand break repair. tmpzr1t_l9r_go_relaxed.owl up regulation of single strand break repair|up-regulation of single strand break repair|upregulation of single strand break repair|activation of single strand break repair rl 2014-10-06T10:59:10Z biological_process owl:Class GO:0140670 biolink:NamedThing ATP-dependent cohesin unloading activity Facilitating a conformational change to unload a cohesin complex from sister chromatids, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21700 pg 2021-06-24T13:36:05Z molecular_function owl:Class GO:0140083 biolink:NamedThing ATP-dependent protein-DNA unloading activity Facilitating the removal of a protein or protein complex from a DNA molecule driven by ATP hydrolysis. This can be achieved for example by introducing non-canonical DNA structures or generating torque to directly inhibit a protein-DNA binding interaction. tmpzr1t_l9r_go_relaxed.owl protein-DNA unloading ATPase activity https://github.com/geneontology/go-ontology/issues/13992|https://github.com/geneontology/go-ontology/issues/21612 pg 2017-08-08T14:50:27Z molecular_function owl:Class GO:0102599 biolink:NamedThing cytochrome P450 dependent beta-amyrin 12,13beta-epoxidase activity Catalysis of the reaction: beta-amyrin + O2 + H+ + NAD(P)H <=> 12,13beta-epoxy-beta-amyrin + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15383 molecular_function owl:Class GO:0042792 biolink:NamedThing mitochondrial rRNA transcription The synthesis of ribosomal RNA (rRNA) from a mitochondrial DNA template. tmpzr1t_l9r_go_relaxed.owl rRNA transcription from mitochondrial promoter biological_process owl:Class GO:0046708 biolink:NamedThing IDP biosynthetic process The chemical reactions and pathways resulting in the formation of IDP, inosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl IDP anabolism|IDP biosynthesis|IDP synthesis|IDP formation biological_process owl:Class GO:0002920 biolink:NamedThing regulation of humoral immune response Any process that modulates the frequency, rate, or extent of a humoral immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000331 biolink:NamedThing regulation of terminal button organization Any process that modulates the frequency, rate or extent of terminal button organization. tmpzr1t_l9r_go_relaxed.owl regulation of terminal bouton organization|regulation of terminal button organisation|regulation of presynaptic bouton organization|regulation of synaptic bouton organization|regulation of bouton organization mah 2011-01-28T11:29:08Z biological_process owl:Class GO:0044200 biolink:NamedThing host cell nuclear membrane Either of the lipid bilayers that surround the host nucleus and form the nuclear envelope; excludes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T10:59:08Z cellular_component owl:Class GO:0047553 biolink:NamedThing 2-oxoglutarate synthase activity Catalysis of the reaction: 2-oxoglutarate + CoA + oxidized ferredoxin = succinyl-CoA + CO2 + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate:ferredoxin oxidoreductase activity|alpha-ketoglutarate synthase activity|2-oxoglutarate:ferredoxin 2-oxidoreductase (decarboxylating)|2-oxoglutarate ferredoxin oxidoreductase activity|KGOR activity|2-oxoglutarate:ferredoxin 2-oxidoreductase (CoA-succinylating)|2-ketoglutarate ferredoxin oxidoreductase activity|alpha-ketoglutarate-ferredoxin oxidoreductase activity RHEA:17297|MetaCyc:2-OXOGLUTARATE-SYNTHASE-RXN|EC:1.2.7.3 molecular_function owl:Class GO:0072534 biolink:NamedThing perineuronal net A dense extracellular matrix (ECM) that forms around many neuronal cell bodies and dendrites late in development and is responsible for synaptic stabilization in the adult brain. tmpzr1t_l9r_go_relaxed.owl PNN mah 2011-01-14T01:37:40Z cellular_component owl:Class GO:0098966 biolink:NamedThing perisynaptic extracellular matrix The portion of the extracellular matrix that lies within the perisynaptic space. tmpzr1t_l9r_go_relaxed.owl perisynaptic ECM|extrasynaptic extracellular matrix cellular_component owl:Class GO:0035268 biolink:NamedThing protein mannosylation The addition of a mannose residue to a protein acceptor molecule. tmpzr1t_l9r_go_relaxed.owl protein amino acid mannosylation biological_process owl:Class GO:0017018 biolink:NamedThing myosin phosphatase activity Catalysis of the reaction: phosphomyosin + H2O = myosin + phosphate. tmpzr1t_l9r_go_relaxed.owl myosin phosphatase myosin binding|myosin phosphatase, intrinsic catalyst activity Reactome:R-HSA-445699|Reactome:R-HSA-390593 GO:0017019 molecular_function owl:Class GO:0038183 biolink:NamedThing bile acid signaling pathway A series of molecular signals initiated by the binding of a bile acid to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl bf 2013-05-16T10:35:10Z biological_process owl:Class GO:0044318 biolink:NamedThing L-aspartate:fumarate oxidoreductase activity Catalysis of the reaction: L-aspartate + fumarate = alpha-iminosuccinate + succinate. tmpzr1t_l9r_go_relaxed.owl EC:1.4.3.16 This is based on the finding that L-aspartate oxidase (NadB) of E. coli preferentially uses fumarate as the electron acceptor and does so under anaerobic conditions. The same enzyme uses oxygen as the electron acceptor under aerobic conditions. The EC conflates the two reactions in EC:1.4.3.16 (as they are catalyzed by the same enzyme). jl 2010-07-14T01:50:01Z molecular_function owl:Class GO:0060620 biolink:NamedThing regulation of cholesterol import Any process that modulates the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T01:41:08Z biological_process owl:Class GO:0016479 biolink:NamedThing negative regulation of transcription by RNA polymerase I Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase I promoter|negative regulation of transcription from Pol I promoter|downregulation of transcription from RNA polymerase I promoter|down-regulation of transcription from RNA polymerase I promoter|down regulation of transcription from RNA polymerase I promoter|inhibition of transcription from RNA polymerase I promoter biological_process owl:Class GO:0034977 biolink:NamedThing ABIN2-NFKB1-MAP3K8 complex A protein complex that contains the precursor form of NF-kappaB (p105), the NF-kappaB inhibitor ABIN-2, and the kinase TPL-2 (MAP3K8); the complex stabilizes TPL-2 and is involved in signaling in lipopolysaccharide (LPS)-stimulated macrophages. tmpzr1t_l9r_go_relaxed.owl ABIN2-NFKB1-TPL-1 complex cellular_component owl:Class GO:1900186 biolink:NamedThing negative regulation of clathrin-dependent endocytosis Any process that stops, prevents or reduces the frequency, rate or extent of clathrin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl negative regulation of clathrin coated pit-dependent endocytosis|inhibition of clathrin coated pit-dependent endocytosis|down-regulation of clathrin-mediated endocytosis|downregulation of clathrin-mediated endocytosis|down regulation of clathrin-mediated endocytosis|downregulation of clathrin coated pit-dependent endocytosis|inhibition of clathrin-mediated endocytosis|inhibition of clathrin-dependent endocytosis|down-regulation of clathrin coated pit-dependent endocytosis|down regulation of clathrin-dependent endocytosis|downregulation of clathrin-dependent endocytosis|down regulation of clathrin coated pit-dependent endocytosis|down-regulation of clathrin-dependent endocytosis|negative regulation of clathrin-mediated endocytosis hjd 2012-03-16T05:25:02Z biological_process owl:Class GO:0048261 biolink:NamedThing negative regulation of receptor-mediated endocytosis Any process that stops, prevents, or reduces the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport. tmpzr1t_l9r_go_relaxed.owl downregulation of receptor mediated endocytosis|inhibition of receptor mediated endocytosis|down-regulation of receptor mediated endocytosis|negative regulation of receptor mediated endocytosis|down regulation of receptor mediated endocytosis biological_process owl:Class GO:1901215 biolink:NamedThing negative regulation of neuron death Any process that stops, prevents or reduces the frequency, rate or extent of neuron death. tmpzr1t_l9r_go_relaxed.owl inhibition of neuron cell death|inhibition of neuronal cell death|inhibition of neuron death|negative regulation of neuron cell death|negative regulation of neuronal cell death|down regulation of neuron death|down-regulation of neuron cell death|downregulation of neuron cell death|downregulation of neuron death|down regulation of neuron cell death|down regulation of neuronal cell death|down-regulation of neuron death|down-regulation of neuronal cell death|downregulation of neuronal cell death rph 2012-08-02T09:58:07Z biological_process owl:Class GO:0018351 biolink:NamedThing peptidyl-cysteine esterification The addition of an ester group to a cysteine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002140 biolink:NamedThing stereocilia tip link A stereocilia link that is formed by a fine filament running more or less vertically upward from the tip of each shorter stereocilium to attach at a higher point on its adjacent taller neighbor. Tilting the bundle puts tension on the filaments, which pull on mechanically gated ion channels in the membrane of the stereocilia. tmpzr1t_l9r_go_relaxed.owl hjd 2009-05-06T10:28:10Z cellular_component owl:Class GO:0002139 biolink:NamedThing stereocilia coupling link A structure involved in coupling stereocilia to one another in sensory hair cells There are four morphologically distinct types: tip links, horizontal top connectors, shaft connectors and ankle links. Tip links and horizontal top connectors are the only inter-stereocilia links associated with mature cochlea, whereas ankle links appear during development of the auditory hair bundle. tmpzr1t_l9r_go_relaxed.owl hjd 2009-05-06T10:25:38Z cellular_component owl:Class GO:0010205 biolink:NamedThing photoinhibition The mechanism by which high light intensity inhibits photosynthesis through inactivation of the D1 protein of photosystem II. tmpzr1t_l9r_go_relaxed.owl photosystem II inhibition Wikipedia:Photoinhibition biological_process owl:Class GO:0009644 biolink:NamedThing response to high light intensity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990360 biolink:NamedThing PKM2 protein kinase complex A protein complex capable of phosphorylating a large number of protein targets. Contributes to cell proliferation under glycose starvation conditions. In human, the complex is present as a dimer. tmpzr1t_l9r_go_relaxed.owl PKM2-SAICAR complex|PKM2-SAICAR protein kinase complex bhm 2014-04-17T14:03:36Z cellular_component owl:Class GO:1900124 biolink:NamedThing negative regulation of nodal receptor complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of nodal receptor complex assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of nodal receptor complex formation|negative regulation of ActRIIB.ALK4.EGF-CFC complex formation|downregulation of nodal receptor complex assembly|down-regulation of ActRIIB.ALK4.EGF-CFC complex formation|down-regulation of nodal receptor complex formation|down regulation of nodal receptor complex assembly|inhibition of ActRIIB.ALK4.EGF-CFC complex formation|down regulation of ActRIIB.ALK4.EGF-CFC complex formation|downregulation of nodal receptor complex formation|downregulation of ActRIIB.ALK4.EGF-CFC complex formation|inhibition of nodal receptor complex assembly|negative regulation of nodal receptor complex formation|inhibition of nodal receptor complex formation|down-regulation of nodal receptor complex assembly bf 2012-02-22T04:21:53Z biological_process owl:Class GO:0034234 biolink:NamedThing regulation of ascospore wall chitin catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of ascospore wall chitin. tmpzr1t_l9r_go_relaxed.owl regulation of ascospore wall chitin breakdown|regulation of ascospore wall chitin degradation|regulation of ascospore wall chitin catabolism biological_process owl:Class GO:0060200 biolink:NamedThing clathrin-sculpted acetylcholine transport vesicle A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing acetylcholine. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle|clathrin sculpted acetylcholine transport vesicle cellular_component owl:Class GO:0060908 biolink:NamedThing plasmid copy number maintenance The maintenance of the number of copies of extrachromosomal plasmid DNA. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-04T02:49:08Z biological_process owl:Class GO:0006276 biolink:NamedThing plasmid maintenance The maintenance of the integrity of extrachromosomal plasmid DNA; includes processes that ensure plasmids are retained in the daughter cells after cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902621 biolink:NamedThing actomyosin contractile ring disassembly The disaggregation of an actomyosin contractile ring into its constituent components. tmpzr1t_l9r_go_relaxed.owl cytokinetic ring disassembly|CAR disassembly|contractile actomyosin ring disassembly|constriction ring disassembly|actomyosin ring disassembly mah 2014-01-15T09:27:26Z biological_process owl:Class GO:1900693 biolink:NamedThing negative regulation of (+)-kotanin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of (+)-kotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of (+)-kotanin anabolism|downregulation of (+)-kotanin synthesis|down regulation of (+)-kotanin formation|downregulation of (+)-kotanin biosynthetic process|down-regulation of (+)-kotanin biosynthesis|downregulation of (+)-kotanin biosynthesis|negative regulation of (+)-kotanin synthesis|negative regulation of (+)-kotanin formation|down-regulation of (+)-kotanin formation|down regulation of (+)-kotanin anabolism|inhibition of (+)-kotanin biosynthesis|down regulation of (+)-kotanin biosynthesis|negative regulation of (+)-kotanin biosynthesis|inhibition of (+)-kotanin formation|negative regulation of (+)-kotanin anabolism|down-regulation of (+)-kotanin biosynthetic process|down regulation of (+)-kotanin biosynthetic process|inhibition of (+)-kotanin anabolism|inhibition of (+)-kotanin synthesis|inhibition of (+)-kotanin biosynthetic process|down regulation of (+)-kotanin synthesis|down-regulation of (+)-kotanin synthesis|downregulation of (+)-kotanin formation|down-regulation of (+)-kotanin anabolism di 2012-05-22T04:53:26Z biological_process owl:Class GO:0051971 biolink:NamedThing positive regulation of transmission of nerve impulse Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation. tmpzr1t_l9r_go_relaxed.owl positive regulation of conduction of nerve impulse|upregulation of transmission of nerve impulse|stimulation of transmission of nerve impulse|up-regulation of transmission of nerve impulse|up regulation of transmission of nerve impulse|activation of transmission of nerve impulse biological_process owl:Class GO:0031646 biolink:NamedThing positive regulation of nervous system process Any process that activates or increases the frequency, rate or extent of a neurophysiological process. tmpzr1t_l9r_go_relaxed.owl positive regulation of neurological process|up-regulation of neurological process|positive regulation of neurological system process|stimulation of neurological process|upregulation of neurological process|positive regulation of neurophysiological process|up regulation of neurological process|activation of neurological process biological_process owl:Class GO:0000285 biolink:NamedThing 1-phosphatidylinositol-3-phosphate 5-kinase activity Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl type III PIP kinase activity|ATP:1-phosphatidyl-1D-myo-inositol-3-phosphate 5-phosphotransferase activity|phosphatidylinositol-3-phosphate 5-kinase activity|phosphatidylinositol 3-phosphate 5-kinase activity MetaCyc:2.7.1.150-RXN|RHEA:13609|Reactome:R-HSA-1675921|EC:2.7.1.150|Reactome:R-HSA-1675910|Reactome:R-HSA-1676168|KEGG_REACTION:R05802|Reactome:R-HSA-1676134 molecular_function owl:Class GO:0016307 biolink:NamedThing phosphatidylinositol phosphate kinase activity Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol monophosphate kinase activity molecular_function owl:Class GO:0090264 biolink:NamedThing regulation of immune complex clearance by monocytes and macrophages Any process that modulates the rate, frequency, or extent of the process of immune complex clearance by monocytes or macrophages. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-04T04:31:29Z biological_process owl:Class GO:0035299 biolink:NamedThing inositol pentakisphosphate 2-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ATP = 1D-myo-inositol hexakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl Ipk1p|inositol-pentakisphosphate 2-kinase activity|ATP:1D-myo-inositol 1,3,4,5,6-pentakisphosphate 2-phosphotransferase activity|inositol polyphosphate kinase activity|IP5 2-kinase activity|Ins(1,3,4,5,6)P5 2-kinase activity|Gsl1p|inositol 1,3,4,5,6-pentakisphosphate 2-kinase activity|inositol hexakisphosphate synthase RHEA:20313|KEGG_REACTION:R05202|EC:2.7.1.158|MetaCyc:RXN-7163|Reactome:R-HSA-1855176|Reactome:R-HSA-1855179 molecular_function owl:Class GO:0072308 biolink:NamedThing negative regulation of metanephric nephron tubule epithelial cell differentiation Any process that decreases the frequency, rate or extent of metanephric nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0072183 biolink:NamedThing negative regulation of nephron tubule epithelial cell differentiation Any process that decreases the frequency, rate or extent of nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:47:25Z biological_process owl:Class GO:2001035 biolink:NamedThing regulation of tongue muscle cell differentiation Any process that modulates the frequency, rate or extent of tongue muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-24T11:10:16Z biological_process owl:Class GO:0009356 biolink:NamedThing aminodeoxychorismate synthase complex A heterodimeric protein complex that possesses 4-amino-4-deoxychorismate synthase activity. tmpzr1t_l9r_go_relaxed.owl ADC synthase complex|4-amino-4-deoxychorismate synthase complex|p-aminobenzoate synthetase complex cellular_component owl:Class GO:0060976 biolink:NamedThing coronary vasculature development The process whose specific outcome is the progression of the blood vessels of the heart over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl cardiac blood vessel development|heart vasculature development|coronary blood vessel development|cardiac vasculature development|heart blood vessel development dph 2009-10-06T12:15:23Z biological_process owl:Class GO:0102848 biolink:NamedThing 1-18:2-2-18:2-digalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-18:2-digalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-18:2-digalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8310|EC:1.14.19.35 molecular_function owl:Class GO:0071144 biolink:NamedThing heteromeric SMAD protein complex A protein complex composed of SMAD family proteins, a transcription factor complex which binds to the promoters of target genes and recruits co-activators and histone acetyltransferases, facilitating transcription. Phosphorylation of the non-SMAD4 subunit(s) enables binding of SMAD4 to form heteromeric complexes that enter the nucleus to initiate gene transcription. DNA-binding specificity is conferred by other transcription factors binding to SMAD complexes. Interactions with coactivators or corepressors modulate their transcriptional activity. Can be heterotrimeric or heterodimeric. tmpzr1t_l9r_go_relaxed.owl SMAD2-SMAD3-SMAD4 protein complex|SMAD3-SMAD4 protein complex|SMAD2-SMAD4 protein complex|SMAD1-SMAD4 protein complex 2009-11-16T02:44:37Z GO:0071146|GO:0071145 cellular_component owl:Class GO:0061639 biolink:NamedThing Cdv-dependent cytokinesis A cytokinesis that involves a set of conserved proteins including the Cdv proteins, and results in the formation of two similarly sized and shaped cells. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-21T14:55:04Z biological_process owl:Class GO:0071646 biolink:NamedThing regulation of macrophage inflammatory protein-1 gamma production Any process that modulates the frequency, rate, or extent of production of macrophage inflammatory protein-1 gamma. tmpzr1t_l9r_go_relaxed.owl regulation of MIP-1g production|regulation of CCL9 production|regulation of chemokine (C-C motif) ligand 9 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0046310 biolink:NamedThing 1,3-dichloro-2-propanol catabolic process The chemical reactions and pathways resulting in the breakdown of 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic. tmpzr1t_l9r_go_relaxed.owl 1,3-dichloro-2-propanol breakdown|1,3-dichloro-2-propanol catabolism|1,3-dichloro-2-propanol degradation biological_process owl:Class GO:0044109 biolink:NamedThing cellular alcohol catabolic process The chemical reactions and pathways resulting in the breakdown of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom, occurring at the level of the individual cell. tmpzr1t_l9r_go_relaxed.owl jl 2009-07-15T01:44:27Z biological_process owl:Class GO:0019551 biolink:NamedThing glutamate catabolic process to 2-oxoglutarate The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl glutamate catabolism to alpha-ketoglutarate|glutamate breakdown to 2-oxoglutarate|glutamate catabolic process to alpha-oxoglutarate|glutamate catabolism to 2-ketoglutarate|glutamate catabolism to alpha-oxoglutarate|glutamate catabolic process to 2-ketoglutarate|glutamate catabolic process to alpha-ketoglutarate|glutamate degradation to 2-oxoglutarate MetaCyc:PWY-5766|MetaCyc:GLUTAMATE-DEG1-PWY biological_process owl:Class GO:0006103 biolink:NamedThing 2-oxoglutarate metabolic process The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism. tmpzr1t_l9r_go_relaxed.owl 2-ketoglutarate metabolic process|2-oxoglutarate metabolism|alpha-oxoglutarate metabolism|alpha-ketoglutarate metabolism|alpha-oxoglutarate metabolic process|2-ketoglutarate metabolism|alpha-ketoglutarate metabolic process biological_process owl:Class GO:0102698 biolink:NamedThing 5-epi-aristolochene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (+)-5-epi-aristolochene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.61|RHEA:28635|MetaCyc:RXN-4781 molecular_function owl:Class GO:0045134 biolink:NamedThing uridine-diphosphatase activity Catalysis of the reaction: UDP + H2O = UMP + phosphate. tmpzr1t_l9r_go_relaxed.owl UDP phosphohydrolase activity|uridine diphosphatase activity|uridine 5'-diphosphatase activity|UDPase activity KEGG_REACTION:R00155|MetaCyc:RXN-12197|RHEA:64876|EC:3.6.1.6 molecular_function owl:Class GO:0004878 biolink:NamedThing complement component C5a receptor activity Combining with the C5a product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl C5a anaphylatoxin receptor activity GO:0004944 molecular_function owl:Class GO:0046772 biolink:NamedThing viral budding from outer nuclear membrane The envelopment of a virus, in which the naked capsid evaginates from the host outer nuclear membrane system, thus acquiring a membrane envelope. tmpzr1t_l9r_go_relaxed.owl virus budding from outer nuclear membrane during viral capsid envelopment|outer nuclear membrane viral budding during viral capsid envelopment|virus budding from outer nuclear membrane by viral capsid envelopment|viral budding from outer nuclear membrane during viral capsid envelopment https://github.com/geneontology/go-ontology/issues/20782 biological_process owl:Class GO:0060292 biolink:NamedThing long-term synaptic depression A process that modulates synaptic plasticity such that synapses are changed resulting in the decrease in the rate, or frequency of synaptic transmission at the synapse. tmpzr1t_l9r_go_relaxed.owl long term depression|LTD|long term synaptic depression biological_process owl:Class GO:0061301 biolink:NamedThing cerebellum vasculature morphogenesis The process in which the vasculature of the cerebellum is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-06T03:38:05Z biological_process owl:Class GO:1900758 biolink:NamedThing negative regulation of D-amino-acid oxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of D-amino-acid oxidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of L-amino acid:O2 oxidoreductase activity|negative regulation of D-amino-acid:oxygen oxidoreductase (deaminating)|downregulation of new yellow enzyme|down regulation of D-amino-acid oxidase activity|downregulation of D-amino-acid oxidase activity|down-regulation of new yellow enzyme|down-regulation of L-amino acid:O2 oxidoreductase activity|down-regulation of D-amino-acid oxidase activity|downregulation of D-amino-acid:oxygen oxidoreductase (deaminating)|inhibition of L-amino acid:O2 oxidoreductase activity|downregulation of L-amino acid:O2 oxidoreductase activity|down regulation of L-amino acid:O2 oxidoreductase activity|negative regulation of new yellow enzyme|inhibition of new yellow enzyme|down-regulation of D-amino-acid:oxygen oxidoreductase (deaminating)|inhibition of D-amino-acid oxidase activity|down regulation of new yellow enzyme|inhibition of D-amino-acid:oxygen oxidoreductase (deaminating)|down regulation of D-amino-acid:oxygen oxidoreductase (deaminating) pm 2012-05-31T11:24:06Z biological_process owl:Class GO:0019316 biolink:NamedThing D-allose catabolic process The chemical reactions and pathways resulting in the breakdown of D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose. tmpzr1t_l9r_go_relaxed.owl D-allose degradation|D-allose catabolism|D-allose breakdown MetaCyc:PWY0-44 biological_process owl:Class GO:0019314 biolink:NamedThing D-allose metabolic process The chemical reactions and pathways involving D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose. tmpzr1t_l9r_go_relaxed.owl D-allose metabolism biological_process owl:Class GO:0004439 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidyl-myo-inositol-4,5-bisphosphate phosphatase activity|phosphatidylinositol-bisphosphatase activity|PI(4,5)P2 5-phosphatase activity|PtdIns(4,5)P(2) 5-phosphatase activity|triphosphoinositide phosphatase activity|phosphatidylinositol 4,5-bisphosphate phosphatase activity|PtdIns(4,5)P2 5-phosphatase activity|triphosphoinositide phosphomonoesterase activity RHEA:22764|Reactome:R-HSA-8868648|KEGG_REACTION:R04404|Reactome:R-HSA-1675824|EC:3.1.3.36|MetaCyc:PHOSPHATIDYLINOSITOL-BISPHOSPHATASE-RXN|Reactome:R-HSA-1676177 GO:0001668 molecular_function owl:Class GO:0034595 biolink:NamedThing phosphatidylinositol phosphate 5-phosphatase activity Catalysis of the removal of the 5-phosphate group of a phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 5-phosphatase activity|polyphosphoinositol lipid 5-phosphatase activity molecular_function owl:Class GO:0031141 biolink:NamedThing induction of conjugation upon carbon starvation The process in which a cell initiates conjugation with cellular fusion upon carbon starvation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031140 biolink:NamedThing induction of conjugation upon nutrient starvation The process in which a cell initiates conjugation with cellular fusion upon starvation for one or more nutrients. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034149 biolink:NamedThing positive regulation of toll-like receptor 5 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 5 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR5 signaling pathway|positive regulation of toll-like receptor 5 signalling pathway biological_process owl:Class GO:0034010 biolink:NamedThing sulfolactate sulfo-lyase activity Catalysis of the reaction: 3-sulfolactate = pyruvate + sulfite. tmpzr1t_l9r_go_relaxed.owl 3-sulfolactate bisulfite-lyase (pyruvate-forming) activity|3-sulfolactate bisulfite-lyase activity|SuyAB|Suy MetaCyc:4.4.1.24-RXN|EC:4.4.1.24|RHEA:21428|KEGG_REACTION:R07633 molecular_function owl:Class GO:1904064 biolink:NamedThing positive regulation of cation transmembrane transport Any process that activates or increases the frequency, rate or extent of cation transmembrane transport. tmpzr1t_l9r_go_relaxed.owl up regulation of cation transmembrane transport|up-regulation of cation transmembrane transport|upregulation of cation transmembrane transport|activation of cation transmembrane transport sl 2015-03-18T21:11:55Z biological_process owl:Class GO:0015518 biolink:NamedThing arabinose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: arabinose(out) + H+(out) = arabinose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl arabinose:hydrogen symporter activity|arabinose efflux transmembrane transporter activity|arabinose efflux permease activity GO:0015523 molecular_function owl:Class GO:0000410 biolink:NamedThing carbon catabolite repression of transcription by galactose A transcription regulation process in which the presence of galactose that leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription by galactose|downregulation of transcription by galactose|down regulation of transcription by galactose|down-regulation of transcription by galactose biological_process owl:Class GO:0000409 biolink:NamedThing regulation of transcription by galactose Any process involving galactose that modulates the frequency, rate or extent or transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901398 biolink:NamedThing regulation of transforming growth factor beta3 activation Any process that modulates the frequency, rate or extent of transforming growth factor beta3 activation. tmpzr1t_l9r_go_relaxed.owl regulation of TGFbeta 3 activation|regulation of TGFB3 activation|regulation of TGF-beta 3 activation bf 2012-10-01T10:49:25Z biological_process owl:Class GO:0045829 biolink:NamedThing negative regulation of isotype switching Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching. tmpzr1t_l9r_go_relaxed.owl negative regulation of isotype switch recombination|negative regulation of class switching|negative regulation of class switch recombination|down regulation of isotype switching|down-regulation of isotype switching|inhibition of isotype switching|downregulation of isotype switching biological_process owl:Class GO:1901650 biolink:NamedThing positive regulation of actomyosin contractile ring localization Any process that activates or increases the frequency, rate or extent of actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl up regulation of actomyosin contractile ring localization|activation of contractile ring localization involved in cell cycle cytokinesis|upregulation of contractile ring localization involved in cell cycle cytokinesis|up-regulation of contractile ring localisation involved in cell cycle cytokinesis|upregulation of actomyosin contractile ring localization|activation of contractile ring localisation involved in cell cycle cytokinesis|up-regulation of contractile ring localization involved in cell cycle cytokinesis|up regulation of contractile ring localization involved in cell cycle cytokinesis|positive regulation of contractile ring localization involved in cell cycle cytokinesis|positive regulation of contractile ring localisation involved in cell cycle cytokinesis|up regulation of contractile ring localisation involved in cell cycle cytokinesis|up-regulation of actomyosin contractile ring localization|activation of actomyosin contractile ring localization|upregulation of contractile ring localisation involved in cell cycle cytokinesis vw 2012-11-19T13:42:54Z biological_process owl:Class GO:2000845 biolink:NamedThing positive regulation of testosterone secretion Any process that activates or increases the frequency, rate or extent of testosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:42:36Z biological_process owl:Class GO:0045966 biolink:NamedThing positive regulation of ecdysteroid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids. tmpzr1t_l9r_go_relaxed.owl activation of ecdysteroid metabolic process|up regulation of ecdysteroid metabolic process|positive regulation of ecdysteroid metabolism|upregulation of ecdysteroid metabolic process|stimulation of ecdysteroid metabolic process|up-regulation of ecdysteroid metabolic process biological_process owl:Class GO:0061453 biolink:NamedThing interstitial cell of Cajal differentiation The process in which a relatively unspecialized cell acquires specialized features of an interstitial cell of Cajal. An interstitial cell of Cajal is an intestinal neuroepithelial cell that serves as a pacemaker to trigger gut contraction. tmpzr1t_l9r_go_relaxed.owl ICC differentiation dph 2012-07-20T08:20:50Z biological_process owl:Class GO:0035010 biolink:NamedThing encapsulation of foreign target Events resulting in the formation of a multilayered cellular sheath surrounding an invader and thus preventing its development. This defense mechanism is often seen in insects in response to nematodes or parasitoids, which are too large to be phagocytosed by individual hemocytes. In some organisms the capsule is blackened due to melanization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000908 biolink:NamedThing positive regulation of glucomannan catabolic process Any process that activates or increases the frequency, rate or extent of glucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucomannan catabolism tt 2011-07-29T01:13:30Z biological_process owl:Class GO:0007176 biolink:NamedThing regulation of epidermal growth factor-activated receptor activity Any process that modulates the frequency, rate or extent of EGF-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of EGF receptor activity|regulation of epidermal growth factor receptor activity|regulation of EGFR activity biological_process owl:Class GO:1901210 biolink:NamedThing regulation of cardiac chamber formation Any process that modulates the frequency, rate or extent of cardiac chamber formation. tmpzr1t_l9r_go_relaxed.owl regulation of heart chamber formation rl 2012-07-31T07:18:35Z biological_process owl:Class GO:0061376 biolink:NamedThing mammillotegmental axonal tract development The process in which the mammillotegmental tract progresses over time, from its formation to the mature structure. The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:09:29Z biological_process owl:Class GO:2001021 biolink:NamedThing negative regulation of response to DNA damage stimulus Any process that stops, prevents or reduces the frequency, rate or extent of response to DNA damage stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of response to genotoxic stress|negative regulation of cellular DNA damage response|negative regulation of cellular response to DNA damage stimulus|negative regulation of DNA damage response yaf 2011-08-19T10:20:29Z biological_process owl:Class GO:0033174 biolink:NamedThing chloroplast proton-transporting ATP synthase complex, catalytic core CF(1) The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the chloroplast thylakoid membrane when the entire ATP synthase is assembled. The chloroplast F0 domain contains three alpha, three beta, one gamma, one delta, and one epsilon subunits. tmpzr1t_l9r_go_relaxed.owl chloroplast proton-transporting F-type ATPase complex, catalytic core CF(1) cellular_component owl:Class GO:2001189 biolink:NamedThing negative regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell Any process that stops, prevents or reduces the frequency, rate or extent of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|negative regulation of T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|negative regulation of T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell yaf 2011-11-03T01:31:36Z biological_process owl:Class GO:0050907 biolink:NamedThing detection of chemical stimulus involved in sensory perception The series of events in which a chemical stimulus is received and converted into a molecular signal as part of sensory perception. tmpzr1t_l9r_go_relaxed.owl sensory perception, sensory detection of chemical stimulus|sensory detection of chemical stimulus|sensory transduction of chemical stimulus|sensory transduction of chemical stimulus during sensory perception|sensory perception, sensory transduction of chemical stimulus|sensory detection of chemical stimulus during sensory perception biological_process owl:Class GO:0019242 biolink:NamedThing methylglyoxal biosynthetic process The chemical reactions and pathways resulting in the formation of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. tmpzr1t_l9r_go_relaxed.owl methylglyoxal biosynthesis|methylglyoxal formation|methylglyoxal anabolism|methylglyoxal synthesis biological_process owl:Class GO:0052889 biolink:NamedThing 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene The series of reactions in which 9,9'-di-cis-zeta-carotene is desaturated to 7,9,9'-tri-cis-neurosporene, and then 7,9,7',9'-tetra-cis-lycopene. The overall reaction for this process is: 9,9'-di-cis-zeta-carotene + 2 quinone = 2 quinol + 7,9,7',9'-tetra-cis-lycopene. tmpzr1t_l9r_go_relaxed.owl 9,9'-di-cis-zeta-carotene catabolism to 7,9,7',9'-tetra-cis-lycopene|7,9,7',9'-tetra-cis-lycopene biosynthesis from 9,9'-di-cis-zeta-carotene KEGG_REACTION:R07511|MetaCyc:RXN-12242 biological_process owl:Class GO:0019247 biolink:NamedThing lactate racemization Partial conversion of one lactate enantiomer into another so that the specific optical rotation is decreased, or even reduced to zero, in the resulting mixture. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019507 biolink:NamedThing pyridine metabolic process The chemical reactions and pathways involving pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor. tmpzr1t_l9r_go_relaxed.owl pyridine metabolism biological_process owl:Class GO:0045695 biolink:NamedThing negative regulation of embryo sac egg cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of embryo sac egg cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of female gametophyte egg cell differentiation|down regulation of female gametophyte egg cell differentiation|negative regulation of female gametophyte egg cell differentiation|inhibition of female gametophyte egg cell differentiation|down-regulation of female gametophyte egg cell differentiation biological_process owl:Class GO:0045694 biolink:NamedThing regulation of embryo sac egg cell differentiation Any process that modulates the frequency, rate or extent of embryo sac egg cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of female gametophyte egg cell differentiation biological_process owl:Class GO:0060723 biolink:NamedThing regulation of cell proliferation involved in embryonic placenta development Any process that modulates the rate, frequency, or extent of cell proliferation involved in embryonic placenta development. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T12:50:23Z biological_process owl:Class GO:0062075 biolink:NamedThing pollen aperture formation The cellular component assembly process of forming pollen apertures, areas where exine is reduced or absent, in the pollen cell wall. tmpzr1t_l9r_go_relaxed.owl dph 2018-09-19T19:25:59Z biological_process owl:Class GO:0051063 biolink:NamedThing CDP reductase activity Catalysis of the reaction: dCDP + thioredoxin disulfide + H2O = CDP + thioredoxin. tmpzr1t_l9r_go_relaxed.owl CDP reduction MetaCyc:CDPREDUCT-RXN molecular_function owl:Class GO:0106007 biolink:NamedThing microtubule anchoring at cell cortex of cell tip Any process in which a microtubule is maintained in a specific location at the cell tip by attachment to the cell cortex. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-19T15:12:45Z biological_process owl:Class GO:0034453 biolink:NamedThing microtubule anchoring Any process in which a microtubule is maintained in a specific location in a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071601 biolink:NamedThing sphere organelle A nuclear body that is found in the germinal vesicles of amphibian oocytes, and consist of three major parts: a remarkably spherical body about 5-10 pm in diameter, smaller spherical or nearly spherical granules on the surface, and inclusions of various sizes that strongly resemble the surface granules. The parts of the sphere organelle have distinct compositions, including splicing snRNAs and proteins. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-04T04:26:41Z cellular_component owl:Class GO:0097685 biolink:NamedThing dinoflagellate apical groove A cell surface furrow (or groove) found on a dinoflagellate apex. It typically loops around the apex. tmpzr1t_l9r_go_relaxed.owl apical groove The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-12-18T09:34:52Z cellular_component owl:Class GO:0097610 biolink:NamedThing cell surface furrow A furrow that may be found on the cell surface. Examples include the cingulum and sulcus found in some dinoflagellates. tmpzr1t_l9r_go_relaxed.owl cell surface groove|groove|furrow pr 2014-06-09T11:22:38Z cellular_component owl:Class GO:1905029 biolink:NamedThing positive regulation of membrane depolarization during AV node cell action potential Any process that activates or increases the frequency, rate or extent of membrane depolarization during AV node cell action potential. tmpzr1t_l9r_go_relaxed.owl activation of membrane depolarization during AV node cardiac muscle cell action potential|positive regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|up-regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|up regulation of membrane depolarization during AV node cell action potential|up-regulation of membrane depolarization during AV node cardiac muscle cell action potential|up regulation of membrane depolarization during AV node cardiac muscle cell action potential|positive regulation of membrane depolarization during AV node cardiac muscle cell action potential|upregulation of membrane depolarization during AV node cell action potential|up-regulation of membrane depolarization during AV node cell action potential|upregulation of membrane depolarization during AV node cardiac muscle cell action potential|activation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|upregulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|up regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential|activation of membrane depolarization during AV node cell action potential rph 2016-03-04T13:46:24Z biological_process owl:Class GO:0050418 biolink:NamedThing hydroxylamine reductase activity Catalysis of the reaction: NH3 + H2O + acceptor = hydroxylamine + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl ammonia:acceptor oxidoreductase activity|ammonia:(acceptor) oxidoreductase activity|hydroxylamine (acceptor) reductase activity RHEA:22052|MetaCyc:HYDROXYLAMINE-REDUCTASE-RXN|EC:1.7.99.1 molecular_function owl:Class GO:0033639 biolink:NamedThing modulation by symbiont of host response to water Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000282 biolink:NamedThing cellular bud site selection The specification of the site where a daughter cell will form, in organisms that reproduce by budding. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl bud site selection/establishment of cell polarity Note that this term was split from 'bud site selection/establishment of cell polarity (sensu Saccharomyces) ; GO:0007115' (a sibling term, 'establishment of cell polarity (sensu Saccharomyces) ; GO:0000283', was created but has since been merged with 'establishment of cell polarity' ; GO:0030010). biological_process owl:Class GO:1905136 biolink:NamedThing dethiobiotin import across plasma membrane The directed movement of dethiobiotin from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl dethiobiotin import into cell|dethiobiotin import jl 2012-12-06T13:06:28Z GO:1901690|GO:0044757 biological_process owl:Class GO:0031089 biolink:NamedThing platelet dense granule lumen The volume enclosed by the membrane of the platelet dense granule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051137 biolink:NamedThing negative regulation of NK T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of NK T cell development|negative regulation of natural killer T cell differentiation|downregulation of NK T cell differentiation|down-regulation of NK T cell differentiation|down regulation of NK T cell differentiation|negative regulation of natural T cell differentiation|negative regulation of NK T lymphocyte differentiation|negative regulation of NK T-lymphocyte differentiation|negative regulation of NT cell differentiation|inhibition of NK T cell differentiation|negative regulation of NKT cell differentiation|negative regulation of NK T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1990877 biolink:NamedThing Lst4-Lst7 complex A heterodimeric complex that functions as a GTPase-Activating Protein (GAP) Complex for members of the Rag family of GTPases. In the budding yeast, this complex contains Lst4 and Lst7, while the orthologous mammalian complex contains Follicular (FLCN) and either follicular interaction protein 1 (FNIP1) or FNIP2. tmpzr1t_l9r_go_relaxed.owl FLCN-FNIP2 complex|FLCN-FNIP1 complex|FNIP-Folliculin RagC/D GAP complex rb 2015-10-01T22:44:58Z cellular_component owl:Class GO:1902773 biolink:NamedThing GTPase activator complex A protein complex which is capable of GTPase activator activity. tmpzr1t_l9r_go_relaxed.owl An example of this is BFA1 in Saccharomyces cerevisiae (P47113) in PMID:16449187 (inferred from direct assay). bhm 2014-03-17T14:26:08Z cellular_component owl:Class GO:0062105 biolink:NamedThing RNA 2'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + RNA = S-adenosyl-L-homocysteine + RNA containing 2'-O-methylribonucleotide. tmpzr1t_l9r_go_relaxed.owl RHEA:58956 dph 2019-01-23T14:23:00Z molecular_function owl:Class GO:0005668 biolink:NamedThing RNA polymerase transcription factor SL1 complex A RNA polymerase I-specific transcription factor complex that contains the TATA-box-binding protein (TBP) and at least three TBP-associated factors including proteins known in mammals as TAFI110, TAFI63 and TAFI48. tmpzr1t_l9r_go_relaxed.owl selectivity factor SL1 complex|TIF-IB cellular_component owl:Class GO:1904568 biolink:NamedThing cellular response to wortmannin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a wortmannin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to wartmannin sl 2015-08-19T16:22:34Z biological_process owl:Class GO:1900567 biolink:NamedThing chanoclavine-I aldehyde metabolic process The chemical reactions and pathways involving chanoclavine-I aldehyde. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I aldehyde metabolism di 2012-05-15T06:31:00Z biological_process owl:Class GO:0099151 biolink:NamedThing regulation of postsynaptic density assembly Any process that modulates the frequency, rate or extent of postsynaptic density assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynaptic density. tmpzr1t_l9r_go_relaxed.owl dos 2017-07-05T13:20:48Z biological_process owl:Class GO:0045453 biolink:NamedThing bone resorption The process in which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Bone_resorption biological_process owl:Class GO:1904009 biolink:NamedThing cellular response to monosodium glutamate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosodium glutamate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T18:26:40Z biological_process owl:Class GO:1904008 biolink:NamedThing response to monosodium glutamate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosodium glutamate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T18:26:34Z biological_process owl:Class GO:0004671 biolink:NamedThing protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:protein-C-terminal-S-farnesyl-L-cysteine O-methyltransferase activity|farnesyl-protein carboxymethyltransferase activity|prenylcysteine methyltransferase activity|prenylated protein methyltransferase activity|isoprenylated protein methyltransferase activity|prenylcysteine carboxymethyltransferase activity|protein S-farnesylcysteine C-terminal methyltransferase activity|farnesyl cysteine C-terminal methyltransferase activity|prenylated protein carboxyl methyltransferase activity|farnesylated protein C-terminal O-methyltransferase activity|isoprenylcysteine carboxylmethyltransferase activity|prenylcysteine carboxyl methyltransferase activity|protein-S-isoprenylcysteine O-methyltransferase activity|prenylcysteine carboxylmethyltransferase activity|protein C-terminal farnesylcysteine O-methyltransferase activity|S-farnesylcysteine methyltransferase activity RHEA:21672|KEGG_REACTION:R04496|Reactome:R-HSA-9647977|MetaCyc:2.1.1.100-RXN|Reactome:R-HSA-6788650|EC:2.1.1.100 GO:0018225 molecular_function owl:Class GO:0001735 biolink:NamedThing prenylcysteine oxidase activity Catalysis of the reaction: S-prenyl-L-cysteine + O2 + H2O = a prenal + L-cysteine + H2O2. tmpzr1t_l9r_go_relaxed.owl S-prenyl-L-cysteine:oxygen oxidoreductase activity|prenylcysteine lyase activity EC:1.8.3.5|RHEA:53892|MetaCyc:1.8.3.5-RXN molecular_function owl:Class GO:0061790 biolink:NamedThing dense core granule docking The initial attachment of a dense core granule membrane to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-08T15:51:49Z biological_process owl:Class GO:0052036 biolink:NamedThing suppression by symbiont of host inflammatory response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the inflammatory response of the host organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host inflammatory response|down regulation by symbiont of host inflammatory response|inhibition by symbiont of host inflammatory response|negative regulation by organism of inflammatory response of other organism involved in symbiotic interaction|downregulation by symbiont of host inflammatory response|down-regulation by symbiont of host inflammatory response GO:0052260 biological_process owl:Class GO:0031897 biolink:NamedThing Tic complex The translocon of the inner envelope of chloroplasts, which facilitates the import of proteins across the chloroplast inner membrane. tmpzr1t_l9r_go_relaxed.owl chloroplast inner membrane translocase complex cellular_component owl:Class GO:0019339 biolink:NamedThing parathion catabolic process The chemical reactions and pathways resulting in the breakdown of parathion, a highly toxic organophosphate compound. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition. tmpzr1t_l9r_go_relaxed.owl parathion degradation|parathion catabolism|parathion breakdown MetaCyc:PARATHION-DEGRADATION-PWY biological_process owl:Class GO:0061170 biolink:NamedThing negative regulation of hair follicle placode formation Any process that decreases the rate, frequency, or extent of hair follicle placode formation, the developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-25T01:10:48Z biological_process owl:Class GO:1904559 biolink:NamedThing cellular response to dextromethorphan Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dextromethorphan stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-08-14T16:09:24Z biological_process owl:Class GO:0150139 biolink:NamedThing positive regulation of interleukin-37 production Any process that activates or increases the frequency, rate or extent of interleukin-37 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-37 biosynthetic process bc 2019-12-08T08:47:29Z biological_process owl:Class GO:1902664 biolink:NamedThing positive regulation of peptidyl-L-cysteine S-palmitoylation Any process that activates or increases the frequency, rate or extent of peptidyl-L-cysteine S-palmitoylation. tmpzr1t_l9r_go_relaxed.owl activation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|up-regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|activation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|up-regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|up regulation of peptidyl-cysteine S-palmitoylation|up-regulation of peptidyl-cysteine S-palmitoylation|positive regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|positive regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|up regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|upregulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|activation of peptidyl-cysteine S-palmitoylation|up regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|activation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|upregulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|up-regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|positive regulation of peptidyl-cysteine S-palmitoylation|activation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|up regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|up-regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|upregulation of peptidyl-L-cysteine S-palmitoylation|upregulation of peptidyl-cysteine S-palmitoylation|up regulation of peptidyl-L-cysteine S-palmitoylation|positive regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|upregulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|up-regulation of peptidyl-L-cysteine S-palmitoylation|up regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|positive regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|activation of peptidyl-L-cysteine S-palmitoylation|upregulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine mm2 2014-01-29T11:33:28Z biological_process owl:Class GO:0003992 biolink:NamedThing N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + N(2)-acetyl-L-ornithine = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl N-acetylornithine-delta-transaminase activity|succinylornithine aminotransferase activity|N(2)-acetylornithine 5-transaminase activity|N-acetylornithine aminotransferase activity|ACOAT activity|N2-acetyl-L-ornithine:2-oxoglutarate aminotransferase activity|acetylornithine 5-aminotransferase activity|acetylornithine delta-transaminase activity|acetylornithine aminotransferase activity|acetylornithine transaminase activity|2-N-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity|N2-acetylornithine 5-transaminase activity|N2-acetylornithine 5-aminotransferase activity EC:2.6.1.11|MetaCyc:ACETYLORNTRANSAM-RXN|KEGG_REACTION:R02283|RHEA:18049 GO:0047318 molecular_function owl:Class GO:0010768 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a UV damage stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039663 biolink:NamedThing membrane fusion involved in viral entry into host cell Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell. tmpzr1t_l9r_go_relaxed.owl fusion of virus membrane with host membrane|viral entry into host cell via membrane fusion|fusion of virus membrane with host membrane during viral entry bf 2013-08-29T10:15:11Z biological_process owl:Class GO:0046072 biolink:NamedThing dTDP metabolic process The chemical reactions and pathways involving dTDP, deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP metabolism biological_process owl:Class GO:0030912 biolink:NamedThing response to deep water Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a deep water stimulus, being immersed in standing deep water throughout the life cycle. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be confused with 'response to flooding ; GO:0009413'; which refers to immersion in water on a shorter time scale. biological_process owl:Class GO:0046326 biolink:NamedThing positive regulation of glucose import Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl up-regulation of glucose import|positive regulation of glucose uptake|stimulation of glucose import|activation of glucose import|up regulation of glucose import|upregulation of glucose import biological_process owl:Class GO:0046324 biolink:NamedThing regulation of glucose import Any process that modulates the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl regulation of glucose uptake biological_process owl:Class GO:1904040 biolink:NamedThing positive regulation of iron export across plasma membrane Any process that activates or increases the frequency, rate or extent of export of iron ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl up-regulation of ferrous iron export|positive regulation of ferrous iron export|up regulation of iron(2+) export|up regulation of ferrous iron export|positive regulation of iron(2+) export|upregulation of iron(2+) export|activation of ferrous iron export|upregulation of ferrous iron export|up-regulation of iron(2+) export|activation of iron(2+) export kom 2015-03-16T15:36:49Z biological_process owl:Class GO:0061677 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconate aldolase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate <=> pyruvate + D-glyceraldehyde. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxygluconate aldolase activity|KDG aldolase activity MetaCyc:4.1.2.51-RXN|RHEA:35583|MetaCyc:DHDOGALDOL-RXN|EC:4.1.2.51 dph 2015-01-15T13:46:25Z GO:0043725 molecular_function owl:Class GO:0034516 biolink:NamedThing response to vitamin B6 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B6 stimulus. Vitamin B6 encompasses pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051473 biolink:NamedThing glucosylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of glucosylglycerol, alpha-D-glucopyranosyl-alpha-(1,2)-glycerol. tmpzr1t_l9r_go_relaxed.owl glucosylglycerol formation|glucosylglycerol synthesis|glucosylglycerol biosynthesis|glucosylglycerol anabolism biological_process owl:Class GO:1904242 biolink:NamedThing regulation of pancreatic trypsinogen secretion Any process that modulates the frequency, rate or extent of pancreatic trypsinogen secretion. tmpzr1t_l9r_go_relaxed.owl regulation of pancreatic trypsinogen release sl 2015-05-18T19:49:20Z biological_process owl:Class GO:0019153 biolink:NamedThing protein-disulfide reductase (glutathione) activity Catalysis of the reaction: 2 glutathione + protein-disulfide = oxidized glutathione + protein-dithiol. tmpzr1t_l9r_go_relaxed.owl glutathione--insulin transhydrogenase activity|glutathione:protein-disulfide oxidoreductase activity|GSH-insulin transhydrogenase activity|protein-disulphide reductase (glutathione) activity|thiol-protein disulphide oxidoreductase activity|protein disulfide transhydrogenase activity|protein-disulfide isomerase/oxidoreductase activity|reductase, protein disulfide (glutathione)|glutathione-protein disulfide oxidoreductase activity|glutaredoxin reductase|insulin reductase activity|protein disulfide reductase (glutathione)|glutathione-insulin transhydrogenase activity|thiol:protein-disulfide oxidoreductase activity|protein-disulfide interchange enzyme https://github.com/geneontology/go-ontology/issues/21148 MetaCyc:PRODISULFREDUCT-RXN|EC:1.8.4.2|RHEA:21064 molecular_function owl:Class GO:0016772 biolink:NamedThing transferase activity, transferring phosphorus-containing groups Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl EC:2.7.-.- Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. molecular_function owl:Class GO:0002212 biolink:NamedThing behavioral defense response to nematode A behavioral response seeking to protect an organism from an a perceived external threat from a nematode or nematodes to that organism. tmpzr1t_l9r_go_relaxed.owl behavioural defense response to nematode biological_process owl:Class GO:0002215 biolink:NamedThing defense response to nematode A response to protect an organism from a directly detected or perceived external threat from a nematode or nematodes, which results in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. tmpzr1t_l9r_go_relaxed.owl physiological defense response to nematode GO:0002216 biological_process owl:Class GO:0046466 biolink:NamedThing membrane lipid catabolic process The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane. tmpzr1t_l9r_go_relaxed.owl membrane lipid catabolism|membrane lipid peroxidation|membrane lipid degradation|membrane lipid breakdown biological_process owl:Class GO:0001810 biolink:NamedThing regulation of type I hypersensitivity Any process that modulates the frequency, rate, or extent of type I hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004746 biolink:NamedThing riboflavin synthase activity Catalysis of the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) = 5-amino-6-(D-ribitylamino)uracil + riboflavin. tmpzr1t_l9r_go_relaxed.owl heavy riboflavin synthase|riboflavine synthase activity|lumazine synthase activity|light riboflavin synthase|6,7-dimethyl-8-(1-D-ribityl)lumazine:6,7-dimethyl-8-(1-D-ribityl)lumazine 2,3-butanediyltransferase activity|riboflavine synthetase activity|vitamin B2 synthase activity|riboflavin synthetase activity EC:2.5.1.9|KEGG_REACTION:R00066|MetaCyc:RIBOFLAVIN-SYN-RXN|RHEA:20772 molecular_function owl:Class GO:0046232 biolink:NamedThing carbazole catabolic process The chemical reactions and pathways resulting in the breakdown of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen. tmpzr1t_l9r_go_relaxed.owl carbazole breakdown|carbazole catabolism|carbazole degradation biological_process owl:Class GO:0006983 biolink:NamedThing ER overload response The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB. tmpzr1t_l9r_go_relaxed.owl positive regulation of NF-kappaB transcription factor activity by ER overload response|endoplasmic reticulum overload response|EOR|EOR-mediated NF-kappaB activation|ER-overload response|EOR-mediated activation of NF-kappaB|positive regulation of NF-kappaB transcription factor activity by EOR GO:0006985 biological_process owl:Class GO:0006984 biolink:NamedThing ER-nucleus signaling pathway Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-nuclear signaling pathway|endoplasmic reticulum to nucleus signaling pathway|ER to nucleus signaling pathway|ER-nuclear signalling pathway|ER to nucleus signalling pathway|ER-nuclear signaling pathway biological_process owl:Class GO:0010135 biolink:NamedThing ureide metabolic process The chemical reactions and pathways involving ureide, allantoin and allantoate, which are the organic forms of nitrogen in nitrogen fixing and transporting plants. tmpzr1t_l9r_go_relaxed.owl ureide metabolism biological_process owl:Class GO:1900836 biolink:NamedThing positive regulation of emericellin biosynthetic process Any process that activates or increases the frequency, rate or extent of emericellin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl di 2012-06-07T09:32:31Z biological_process owl:Class GO:0045575 biolink:NamedThing basophil activation The change in morphology and behavior of a basophil resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the basophil has specifically bound via IgE bound to Fc-epsilonRI receptors. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Basophil_activation biological_process owl:Class GO:0036230 biolink:NamedThing granulocyte activation The change in morphology and behavior of a granulocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-11T10:57:48Z biological_process owl:Class GO:0007341 biolink:NamedThing penetration of zona pellucida The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062136 biolink:NamedThing low-density lipoprotein receptor complex A plasma membrane protein complex capable of low-density lipoprotein particle receptor activity. It may also bind xenobiotic toxins and deliver them into the cell via endocytosis. While most substrates get degraded via the endosome the receptor is recycled to the plasma membrane. It may also act as a transducer of intracellular signal pathways and often acts in corporation with other cell-surface receptors. tmpzr1t_l9r_go_relaxed.owl LDL receptor complex|LDLR complex|low-density lipoprotein particle receptor complex dph 2019-07-02T13:41:28Z cellular_component owl:Class GO:0072107 biolink:NamedThing positive regulation of ureteric bud formation Any process that increases the rate or extent of the developmental process pertaining to the initial formation of the ureteric bud from the Wolffian duct. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T02:37:28Z biological_process owl:Class GO:0120235 biolink:NamedThing regulation of posttranslational protein targeting to membrane, translocation Any process that modulates the frequency, rate or extent of posttranslational protein translocation through the ER membrane. tmpzr1t_l9r_go_relaxed.owl regulation of SRP-independent endoplasmic reticulum protein-membrane targeting, translocation|regulation of posttranslational endoplasmic reticulum membrane protein translocation|regulation of N-terminal signal peptide-independent translocation into the ER https://github.com/geneontology/go-ontology/issues/19791 krc 2020-08-03T16:46:15Z biological_process owl:Class GO:0102121 biolink:NamedThing ceramidase activity Catalysis of the reaction: H2O + a ceramide = a sphingoid base + a fatty acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11375|EC:3.5.1.23 molecular_function owl:Class GO:0102964 biolink:NamedThing S-adenosyl-L-methionine:(S)-corytuberine-N-methyltransferase activity Catalysis of the reaction: (S)-corytuberine + S-adenosyl-L-methionine <=> H+ + magnoflorine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:51524|MetaCyc:RXN-9315 molecular_function owl:Class GO:0120284 biolink:NamedThing tryptophan binding Binding to 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl Trp binding https://github.com/geneontology/go-ontology/issues/20181 krc 2020-11-18T01:04:19Z molecular_function owl:Class GO:0043378 biolink:NamedThing positive regulation of CD8-positive, alpha-beta T cell differentiation Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD8-positive T-lymphocyte differentiation|positive regulation of CD8-positive, alpha beta T-cell differentiation|positive regulation of CD8-positive, alpha beta T-lymphocyte differentiation|positive regulation of CD8-positive T lymphocyte differentiation|stimulation of CD8-positive, alpha-beta T cell differentiation|up-regulation of CD8-positive, alpha-beta T cell differentiation|upregulation of CD8-positive, alpha-beta T cell differentiation|up regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive T-cell differentiation|activation of CD8-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell development|positive regulation of CD8-positive, alpha beta T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905305 biolink:NamedThing negative regulation of cardiac myofibril assembly Any process that stops, prevents or reduces the frequency, rate or extent of cardiac myofibril assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of cardiac myofibril assembly|down regulation of cardiac myofibril assembly|downregulation of cardiac myofibril morphogenesis|down-regulation of cardiac myofibril morphogenesis|negative regulation of cardiac myofibril development|down-regulation of cardiac myofibril development|inhibition of cardiac myofibril assembly|downregulation of cardiac myofibril development|down-regulation of heart myofibril assembly|down regulation of heart myofibril assembly|negative regulation of heart myofibril assembly|inhibition of cardiac myofibril development|down regulation of cardiac myofibril development|inhibition of cardiac myofibril morphogenesis|downregulation of cardiac myofibril assembly|downregulation of heart myofibril assembly|negative regulation of cardiac myofibril morphogenesis|inhibition of heart myofibril assembly|down regulation of cardiac myofibril morphogenesis rl 2016-07-06T10:01:58Z biological_process owl:Class GO:1905304 biolink:NamedThing regulation of cardiac myofibril assembly Any process that modulates the frequency, rate or extent of cardiac myofibril assembly. tmpzr1t_l9r_go_relaxed.owl regulation of heart myofibril assembly|regulation of cardiac myofibril morphogenesis|regulation of cardiac myofibril development rl 2016-07-06T10:01:49Z biological_process owl:Class GO:0002060 biolink:NamedThing purine nucleobase binding Binding to a purine nucleobase, an organic nitrogenous base with a purine skeleton. tmpzr1t_l9r_go_relaxed.owl purine base binding|purine binding molecular_function owl:Class GO:0002054 biolink:NamedThing nucleobase binding Binding to a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033342 biolink:NamedThing negative regulation of collagen binding Any process that stops, prevents, or reduces the frequency, rate or extent of collagen binding. tmpzr1t_l9r_go_relaxed.owl inhibition of collagen binding|down regulation of collagen binding|downregulation of collagen binding|down-regulation of collagen binding biological_process owl:Class GO:0070908 biolink:NamedThing tyrosine:tyramine antiporter activity Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out). tmpzr1t_l9r_go_relaxed.owl tyrosine-tyramine antiporter activity|tyrosine/tyramine antiporter activity mah 2009-09-04T03:49:45Z molecular_function owl:Class GO:0000453 biolink:NamedThing enzyme-directed rRNA 2'-O-methylation The addition of methyl groups to the 2'-oxygen atom of nucleotide residues in an rRNA molecule during ribosome biogenesis where the methylase specifies the site that becomes methylated without using a guide RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000451 biolink:NamedThing rRNA 2'-O-methylation The addition of a methyl group to the 2'-oxygen atom of a nucleotide residue in an rRNA molecule during ribosome biogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016885 biolink:NamedThing ligase activity, forming carbon-carbon bonds Catalysis of the joining of two molecules via a carbon-carbon bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.4.-.- molecular_function owl:Class GO:0060405 biolink:NamedThing regulation of penile erection Any process that modulates the rate, frequency or extent of penile erection. Penile erection is the hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051516 biolink:NamedThing regulation of bipolar cell growth Any process that modulates the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033360 biolink:NamedThing lysine biosynthetic process via diaminopimelate and L-2-acetamido-6-oxoheptanedioate The chemical reactions and pathways resulting in the formation of lysine, via the intermediates diaminopimelate and L-2-acetamido-6-oxoheptanedioate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in four enzymatic steps. tmpzr1t_l9r_go_relaxed.owl lysine biosynthetic process via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate|lysine biosynthesis via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate|lysine anabolism via diaminopimelate and L-2-acetamido-6-oxoheptanedioate|lysine synthesis via diaminopimelate and L-2-acetamido-6-oxoheptanedioate|lysine formation via diaminopimelate and L-2-acetamido-6-oxoheptanedioate MetaCyc:PWY-2941 biological_process owl:Class GO:0032868 biolink:NamedThing response to insulin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. tmpzr1t_l9r_go_relaxed.owl response to insulin stimulus biological_process owl:Class GO:0043434 biolink:NamedThing response to peptide hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals. tmpzr1t_l9r_go_relaxed.owl response to peptide hormone stimulus|response to polypeptide hormone stimulus biological_process owl:Class GO:1990554 biolink:NamedThing mitochondrial 3'-phospho-5'-adenylyl sulfate transmembrane transport The process in which 3'-phospho-5'-adenylyl sulfate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:39:22Z biological_process owl:Class GO:1990898 biolink:NamedThing meiotic DNA double-strand break clipping The process by which SPO11/Rec12-oligonucleotide complexes are removed from 5' DNA double-strand breaks induced during meiosis. Proteins involved in this process include the MRX/MRN complex and Sae2/Ctp1/RBBP8(CtIP). tmpzr1t_l9r_go_relaxed.owl al 2015-11-10T17:12:27Z biological_process owl:Class GO:0018809 biolink:NamedThing E-phenylitaconyl-CoA hydratase activity Catalysis of the reaction: E-phenylitaconyl-CoA + H2O = (hydroxymethylphenyl)succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0331 molecular_function owl:Class GO:0009092 biolink:NamedThing homoserine metabolic process The chemical reactions and pathways involving homoserine, alpha-amino-gamma-hydroxybutyric acid, an intermediate in the biosynthesis of cystathionine, threonine and methionine. tmpzr1t_l9r_go_relaxed.owl homoserine metabolism biological_process owl:Class GO:0015814 biolink:NamedThing p-aminobenzoyl-glutamate transport The directed movement of p-aminobenzoyl-glutamate, the anion of p-aminobenzoyl-glutamic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045628 biolink:NamedThing regulation of T-helper 2 cell differentiation Any process that modulates the frequency, rate or extent of T-helper 2 cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of T-helper 2 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0046113 biolink:NamedThing nucleobase catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. tmpzr1t_l9r_go_relaxed.owl nucleobase breakdown|nucleobase catabolism|nucleobase degradation biological_process owl:Class GO:0016516 biolink:NamedThing interleukin-4 receptor complex A protein complex that binds interleukin-4 (IL-4) and consists of an alpha chain that binds IL-4 with high affinity and a gamma common chain that also forms part of the interleukin-2 receptor. tmpzr1t_l9r_go_relaxed.owl IL-4 receptor complex cellular_component owl:Class GO:0002867 biolink:NamedThing regulation of B cell deletion Any process that modulates the frequency, rate, or extent of B cell deletion. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte deletion|regulation of B lymphocyte deletion|regulation of B-cell deletion biological_process owl:Class GO:0001720 biolink:NamedThing conversion of lysyl-tRNA to pyrrolysyl-tRNA The modification process that results in the conversion of lysine, carried by a specialized lysine-accepting tRNA (possessing a CUA anticodon), to pyrrolysine (a lysine with an amide linkage to a (4R,5R)-4-substituted pyrroline-5-carboxylate). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035854 biolink:NamedThing eosinophil fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a eosinophil cell. A eosinophil is any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. tmpzr1t_l9r_go_relaxed.owl eosinophil cell fate commitment bf 2011-05-13T01:23:28Z biological_process owl:Class GO:0003138 biolink:NamedThing primary heart field specification The process that results in the delineation of a specific region of the lateral mesoderm into the area which will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle. tmpzr1t_l9r_go_relaxed.owl first heart field specification|FHS specification tb 2009-09-22T03:47:24Z biological_process owl:Class GO:1901452 biolink:NamedThing negative regulation of response to benzene Any process that stops, prevents or reduces the frequency, rate or extent of response to benzene. tmpzr1t_l9r_go_relaxed.owl inhibition of response to benzene|downregulation of response to benzene|down-regulation of response to benzene|down regulation of response to benzene tt 2012-10-02T14:20:23Z biological_process owl:Class GO:1901451 biolink:NamedThing regulation of response to benzene Any process that modulates the frequency, rate or extent of response to benzene. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:19:10Z biological_process owl:Class GO:0099134 biolink:NamedThing chimeric sorocarp development Development of a sorocarp formed by aggregation of cells with different genotypes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030587 biolink:NamedThing sorocarp development The process whose specific outcome is the progression of the sorocarp over time, from its formation to the mature structure. The process begins with the aggregation of individual cells and ends with the mature sorocarp. The sorocarp is a structure containing a spore-bearing sorus that sits on top of a stalk. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl sorocarp biosynthesis|fruiting body development|fruiting body formation|sorocarp formation biological_process owl:Class GO:0048358 biolink:NamedThing mucilage pectin biosynthetic process The chemical reactions and pathways resulting in the formation of the pectin component of mucilage. tmpzr1t_l9r_go_relaxed.owl mucilage pectin biosynthesis|mucilage pectin synthesis|mucilage pectin formation|mucilage pectin anabolism biological_process owl:Class GO:0048363 biolink:NamedThing mucilage pectin metabolic process The chemical reactions and pathways involving the pectin component of mucilage. tmpzr1t_l9r_go_relaxed.owl mucilage pectin metabolism biological_process owl:Class GO:0004787 biolink:NamedThing thiamine-diphosphatase activity Catalysis of the reaction: TPP + H2O = TMP + phosphate. tmpzr1t_l9r_go_relaxed.owl thiamin-pyrophosphatase activity|thiaminpyrophosphatase activity|thiamine pyrophosphatase activity|TPPase activity|thiamin pyrophosphatase activity RHEA:27998 molecular_function owl:Class GO:0051326 biolink:NamedThing telophase The cell cycle phase which follows anaphase during M phase of mitosis and meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Telophase note that this term should not be used for direct annotation. if you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic s-phase). to capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0106130 biolink:NamedThing purine phosphoribosyltransferase activity Catalysis of the reaction: RMP + diphosphate = R + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2018-06-14T17:38:53Z molecular_function owl:Class GO:0032644 biolink:NamedThing regulation of fractalkine production Any process that modulates the frequency, rate, or extent of fractalkine production. tmpzr1t_l9r_go_relaxed.owl regulation of CX3CL1 production|regulation of fractalkine biosynthetic process|regulation of CX3CL1 biosynthesis https://github.com/geneontology/go-ontology/issues/19254 GO:0050752 biological_process owl:Class GO:0052317 biolink:NamedThing camalexin metabolic process The chemical reactions and pathways involving camalexin, an indole phytoalexin. tmpzr1t_l9r_go_relaxed.owl camalexin metabolism biological_process owl:Class GO:0003266 biolink:NamedThing regulation of secondary heart field cardioblast proliferation Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. The secondary heart field is the region of the heart that will form the majority of the mesodermal component of the right ventricle, the arterial pole (outflow tract) and the venous pole (inflow tract). tmpzr1t_l9r_go_relaxed.owl regulation of second heart field cardioblast proliferation|regulation of SHF cardioblast proliferation dph 2009-10-15T02:26:15Z biological_process owl:Class GO:0006023 biolink:NamedThing aminoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl aminoglycan biosynthesis|aminoglycan synthesis|aminoglycan anabolism|aminoglycan formation biological_process owl:Class GO:2001253 biolink:NamedThing regulation of histone H3-K36 trimethylation Any process that modulates the frequency, rate or extent of histone H3-K36 trimethylation. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-06T07:38:09Z biological_process owl:Class GO:1901673 biolink:NamedThing regulation of mitotic spindle assembly Any process that modulates the frequency, rate or extent of mitotic spindle assembly. tmpzr1t_l9r_go_relaxed.owl regulation of spindle assembly involved in mitosis al 2012-11-22T09:50:00Z biological_process owl:Class GO:0035901 biolink:NamedThing cellular response to isolation stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lack of contact with other members of the same species. tmpzr1t_l9r_go_relaxed.owl cellular response to social isolation bf 2011-06-22T09:43:34Z biological_process owl:Class GO:0046535 biolink:NamedThing detection of chemical stimulus involved in sensory perception of umami taste The series of events required for a umami taste stimulus to be received and converted to a molecular signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates. tmpzr1t_l9r_go_relaxed.owl sensory detection of chemical stimulus during perception of umami taste|umami taste detection|sensory transduction of chemical stimulus during perception of umami taste|perception of umami taste, detection of chemical stimulus|perception of umami taste, sensory transduction of chemical stimulus|sensory detection of umami taste|sensory transduction of umami taste biological_process owl:Class GO:0070621 biolink:NamedThing EGFR-Shc-Grb2-Sos complex A protein complex that contains the epidermal growth factor receptor (EGFR), Grb2, the adaptor protein SHC and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-29T04:38:10Z cellular_component owl:Class GO:0042343 biolink:NamedThing indole glucosinolate metabolic process The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. tmpzr1t_l9r_go_relaxed.owl indole glucosinolate metabolism biological_process owl:Class GO:0045676 biolink:NamedThing regulation of R7 cell differentiation Any process that modulates the frequency, rate or extent of R7 differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032631 biolink:NamedThing interleukin-27 production The appearance of interleukin-27 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-27 synthesis|interleukin-27 secretion|IL-27 production|interleukin-27 formation|interleukin-27 biosynthetic process GO:0045527|GO:0072625 biological_process owl:Class GO:0099101 biolink:NamedThing G-protein gated potassium channel activity A potassium channel activity that is gated by binding of a G-protein beta-gamma dimer. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904325 biolink:NamedThing positive regulation of inhibitory G protein-coupled receptor phosphorylation Any process that activates or increases the frequency, rate or extent of inhibitory G protein-coupled receptor phosphorylation. tmpzr1t_l9r_go_relaxed.owl up-regulation of inhibitory G-protein coupled receptor phosphorylation|positive regulation of inhibitory G-protein coupled receptor phosphorylation|activation of inhibitory G-protein coupled receptor phosphorylation|up regulation of inhibitory G-protein coupled receptor phosphorylation|upregulation of inhibitory G-protein coupled receptor phosphorylation sl 2015-06-10T19:46:50Z biological_process owl:Class GO:1904680 biolink:NamedThing peptide transmembrane transporter activity Enables the transfer of a peptide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl peptide transporter activity|peptide uptake permease activity Reactome:R-HSA-1500817 tb 2015-09-22T18:50:41Z GO:0015637|GO:0015197 molecular_function owl:Class GO:0019729 biolink:NamedThing peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine The formation of the fluorescent protein FP583 chromophore cross-link from the alpha-carboxyl carbon of residue n, a glutamine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. tmpzr1t_l9r_go_relaxed.owl biosynthesis of protein-protein cross-link via 2-imino-glutaminyl-5-imidazolinone glycine|biosynthetic process of protein-protein cross-link via 2-imino-glutaminyl-5-imidazolinone glycine RESID:AA0189 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0098596 biolink:NamedThing imitative learning Learning in which new behaviors are acquired through imitation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Imitative_learning|Wikipedia:Observational_learning#Observational_learning_compared_to_imitation dos 2014-04-10T11:00:39Z biological_process owl:Class GO:0098597 biolink:NamedThing observational learning Learning that occurs through observing the behavior of others. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Observational_learning Observation here is used in a broad sense to include perception of the behavior of others via any form or combination of forms of sensory perception (visual, auditory etc). Observational learning is broader than imitative learning in that it does not require a duplication of the behavior exhibited by the model. dos 2014-04-10T11:07:10Z biological_process owl:Class GO:0140516 biolink:NamedThing mitotic nuclear pore complex disassembly The mitotic cell cycle process in which the controlled breakdown of the nuclear pores occurs during open or closed mitosis. tmpzr1t_l9r_go_relaxed.owl nuclear pore complex disassembly during mitosis https://github.com/geneontology/go-ontology/issues/19947 pg 2020-09-09T15:29:01Z biological_process owl:Class GO:0070684 biolink:NamedThing seminal clot liquefaction The reproductive process in which coagulated semen becomes liquid following ejaculation, allowing the progressive release of motile spermatozoa. tmpzr1t_l9r_go_relaxed.owl semen liquefaction mah 2009-06-02T04:33:54Z biological_process owl:Class GO:0070871 biolink:NamedThing cell wall organization involved in conjugation with cellular fusion A process of cell wall organization that contributes to conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl cell wall organisation involved in conjugation with cellular fusion mah 2009-08-20T02:23:19Z biological_process owl:Class GO:0071555 biolink:NamedThing cell wall organization A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl cell wall organisation in other organism|cellular cell wall organization|cell wall organization at cellular level|cell wall organisation|cellular cell wall organisation|cell wall organization and biogenesis|cell wall organization in other organism mah 2010-01-13T03:33:07Z GO:0044234|GO:0007047 biological_process owl:Class GO:0062185 biolink:NamedThing secalciferol 1-monooxygenase activity Catalysis of the reaction:2 H(+) + O2 + 2 reduced [adrenodoxin] + secalciferol = calcitetrol + H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl RHEA:49064 dph 2019-11-26T18:46:18Z molecular_function owl:Class GO:1900355 biolink:NamedThing negative regulation of methanofuran metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of methanofuran metabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of methanofuran metabolism|down regulation of methanofuran metabolism|down regulation of methanofuran metabolic process|down-regulation of methanofuran metabolic process|negative regulation of methanofuran metabolism|downregulation of methanofuran metabolic process|downregulation of methanofuran metabolism|inhibition of methanofuran metabolic process|inhibition of methanofuran metabolism tt 2012-04-06T02:15:53Z biological_process owl:Class GO:0044162 biolink:NamedThing host cell cytoplasmic vesicle membrane The lipid bilayer surrounding a host cell cytoplasmic vesicle. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:24:02Z cellular_component owl:Class GO:0018774 biolink:NamedThing 2,6-dioxo-6-phenylhexa-3-enoate hydrolase activity Catalysis of the reaction: 2,6-dioxo-6-phenylhexa-3-enoate + H2O = benzoate + 2-oxopent-4-enoate. tmpzr1t_l9r_go_relaxed.owl HOHPDA hydrolase activity|2,6-dioxo-6-phenylhexa-3-enoate benzoylhydrolase activity|2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase activity MetaCyc:3.7.1.8-RXN|RHEA:17161|EC:3.7.1.8|UM-BBD_enzymeID:e0033 molecular_function owl:Class GO:0035365 biolink:NamedThing regulation of thymine transport Any process that modulates the frequency, rate or extent of the directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of 5-methyluracil transport bf 2010-03-11T10:22:54Z biological_process owl:Class GO:0075203 biolink:NamedThing positive regulation of penetration hypha formation Any process that activates, maintains or increases the frequency, rate or extent of symbiont penetration hypha formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont penetration hypha formation for entry into host https://github.com/geneontology/go-ontology/issues/21121 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0009647 biolink:NamedThing skotomorphogenesis The control of plant growth, development, and differentiation in response to growth in darkness. tmpzr1t_l9r_go_relaxed.owl etiolation biological_process owl:Class GO:0071683 biolink:NamedThing sensory dendrite A dendrite that is found on a sensory neuron, and directly transduces a sensory signal from the sensory neuron to another neuron. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-19T04:17:05Z cellular_component owl:Class GO:0071099 biolink:NamedThing alphaV-beta6 integrin-TGFbeta-3 complex A protein complex that consists of an alphaV-beta6 integrin complex bound to transforming growth factor beta-3 (TGFbeta-3). tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB6-TFGB3 complex mah 2009-11-06T04:52:27Z cellular_component owl:Class GO:0010119 biolink:NamedThing regulation of stomatal movement Any process that modulates the frequency, rate or extent of stomatal movement. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098765 biolink:NamedThing meiosis II cell cycle phase A meiotic cell cycle phase that occurs after meiosis I (the first meiotic nuclear division). tmpzr1t_l9r_go_relaxed.owl This term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation should be to 'regulation of x/y phase transition' or to a process which occurs during the reported phase (e.g. mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0098762 biolink:NamedThing meiotic cell cycle phase One of the distinct periods or stages into which the meiotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events. tmpzr1t_l9r_go_relaxed.owl This term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation should be to 'regulation of x/y phase transition' or to a process which occurs during the reported phase (e.g. mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0034430 biolink:NamedThing monolayer-surrounded lipid storage body outer lipid monolayer The single layer of phopholipids surrounding a lipid storage body. tmpzr1t_l9r_go_relaxed.owl oil body outer lipid monolayer|lipid droplet outer lipid monolayer|spherosome outer lipid monolayer|lipid storage body surface lipid monolayer|oleosome outer lipid monolayer cellular_component owl:Class GO:0034646 biolink:NamedThing organelle-enclosing lipid monolayer A lipid monolayer that surrounds and encloses an organelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000369 biolink:NamedThing regulation of clathrin-dependent endocytosis Any process that modulates the frequency, rate or extent of clathrin-mediated endocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of clathrin-mediated endocytosis|regulation of clathrin coated pit-dependent endocytosis mah 2011-02-09T12:36:18Z biological_process owl:Class GO:0018920 biolink:NamedThing glyphosate metabolic process The chemical reactions and pathways involving glyphosate, a broad-spectrum herbicide also known by the trade name Roundup. It is a member of a broad class of compounds known as phosphonic acids, which contain a direct carbon-to-phosphorus (C-P) bond. tmpzr1t_l9r_go_relaxed.owl Roundup metabolism|glyphosate metabolism|Roundup metabolic process UM-BBD_pathwayID:gly biological_process owl:Class GO:0043428 biolink:NamedThing 2-heptaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-heptaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-heptaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 2-heptaprenyl-6-methoxy-1,4-benzoquinone methylase activity RHEA:44756|MetaCyc:RXN-9227 Note that the polyprenyl sidechain substrate for these methyltransferases varies in length between species, for example, 6 units in S. cerevisiae, 8 units in E. coli and 10 units in G. suboxidans. Where the length of the substrate polyprenyl chain is unknown, the term '2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity ; GO:0008425' should be used. molecular_function owl:Class GO:1990297 biolink:NamedThing renal amino acid absorption A renal system process in which amino acids are taken up from the collecting ducts, glomerulus and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl hjd 2014-02-25T22:05:57Z biological_process owl:Class GO:0007124 biolink:NamedThing pseudohyphal growth The process in which cells grow as a chain of physically attached, elongated cells in response to an environmental stimulus or stimuli. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070783 biolink:NamedThing growth of unicellular organism as a thread of attached cells A filamentous growth process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium such as an agar plate, exhibited by unicellular fungi under certain growth conditions. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-07T02:21:14Z biological_process owl:Class GO:0036522 biolink:NamedThing negative regulation by symbiont of host protein localization to phagocytic vesicle Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of protein localisation to the host phagosome. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition of host protein localisation to phagosome|disruption of host protein localisation to phagosome|suppression of host protein localisation to phagosome bf 2016-06-06T14:49:51Z biological_process owl:Class GO:0036521 biolink:NamedThing modulation by symbiont of host protein localization to phagocytic vesicle Any process in which an organism modulates the frequency, rate or extent of protein localisation to the host phagosome. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host protein localisation to phagosome bf 2016-06-06T14:47:10Z biological_process owl:Class GO:0002304 biolink:NamedThing gamma-delta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of a gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl gamma-delta intraepithelial T-lymphocyte differentiation|gamma-delta intraepithelial T cell development|gamma-delta intraepithelial T-cell differentiation|gamma-delta intraepithelial T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0042492 biolink:NamedThing gamma-delta T cell differentiation The process in which a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell. A gamma-delta T cell is a T cell that expresses a gamma-delta T cell receptor complex. tmpzr1t_l9r_go_relaxed.owl gamma-delta T lymphocyte differentiation|gamma-delta T-cell differentiation|gamma-delta T-lymphocyte differentiation|gamma-delta T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0021569 biolink:NamedThing rhombomere 3 development The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009397 biolink:NamedThing folic acid-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of folic acid and its derivatives. tmpzr1t_l9r_go_relaxed.owl folate and derivative catabolic process|vitamin B9 and derivative catabolism|folate and derivative catabolism|folate-containing compound catabolism|folic acid-containing compound breakdown|folic acid and derivative catabolic process|vitamin M and derivative catabolism|folate-containing compound catabolic process|folic acid-containing compound catabolism|folic acid and derivative catabolism|vitamin B9 and derivative catabolic process|vitamin M and derivative catabolic process|folic acid-containing compound degradation biological_process owl:Class GO:1902844 biolink:NamedThing positive regulation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway A negative regulation of canonical Wnt signaling pathway that results in positive regulation of spinal cord association neuron differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway|activation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway|upregulation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway|positive regulation of spinal cord dorsal interneuron differentiation by negative regulation of canonical Wnt signaling pathway|upregulation of spinal cord dorsal interneuron differentiation by negative regulation of canonical Wnt signaling pathway|up regulation of spinal cord dorsal interneuron differentiation by negative regulation of canonical Wnt signaling pathway|up regulation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway|activation of spinal cord dorsal interneuron differentiation by negative regulation of canonical Wnt signaling pathway|up-regulation of spinal cord dorsal interneuron differentiation by negative regulation of canonical Wnt signaling pathway mr 2014-04-01T15:28:30Z biological_process owl:Class GO:0010034 biolink:NamedThing response to acetate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031765 biolink:NamedThing type 2 galanin receptor binding Binding to a type 2 galanin receptor. tmpzr1t_l9r_go_relaxed.owl type 2 galanin receptor ligand molecular_function owl:Class GO:0043801 biolink:NamedThing hexulose-6-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate + formaldehyde = D-arabino-3-hexulose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl EC:4.1.2.43|RHEA:25201|MetaCyc:R10-RXN molecular_function owl:Class GO:0060614 biolink:NamedThing negative regulation of mammary gland development in males by androgen receptor signaling pathway Any process that decreases the rate or extent of mammary gland development in the male by an androgen binding to its receptor, causing a change in state or activity of a cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of mammary gland development in males by androgen receptor signalling pathway dph 2009-05-18T08:34:40Z biological_process owl:Class GO:0048214 biolink:NamedThing regulation of Golgi vesicle fusion to target membrane Any process that modulates the frequency, rate or extent of Golgi vesicle fusion to target membrane. tmpzr1t_l9r_go_relaxed.owl Note that GTP-binding Rab proteins serve as regulators of vesicle targeting and fusion. biological_process owl:Class GO:0050605 biolink:NamedThing superoxide reductase activity Catalysis of the reaction: superoxide + reduced rubredoxin + 2 H+ = H2O2 + rubredoxin. tmpzr1t_l9r_go_relaxed.owl rubredoxin:superoxide oxidoreductase activity|desulfoferrodoxin activity|neelaredoxin activity EC:1.15.1.2|MetaCyc:1.15.1.2-RXN|RHEA:21324 molecular_function owl:Class GO:2000988 biolink:NamedThing regulation of hemicellulose catabolic process Any process that modulates the frequency, rate or extent of hemicellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of hemicellulose catabolism tt 2011-08-08T03:08:16Z biological_process owl:Class GO:0075193 biolink:NamedThing regulation of haustorium mother cell formation Any process that modulates the frequency, rate or extent of symbiont haustorium mother cell formation. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of haustorium mother cell formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0043532 biolink:NamedThing angiostatin binding Binding to angiostatin, a proteolytic product of plasminogen or plasmin containing at least one intact kringle domain, and which is an inhibitor of angiogenesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045237 biolink:NamedThing CXCR1 chemokine receptor binding Binding to a CXCR1 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CXCR1 chemokine receptor ligand molecular_function owl:Class GO:0052896 biolink:NamedThing spermidine oxidase (propane-1,3-diamine-forming) activity Catalysis of the reaction: H(2)O + O(2) + spermidine = 1,3-diaminopropane + 4-aminobutanal + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl polyamine oxidase (propane-1,3-diamine-forming) activity|spermidine:(acceptor) oxidoreductase activity KEGG_REACTION:R01914|MetaCyc:RXN-10747|EC:1.5.3.14|RHEA:25820 molecular_function owl:Class GO:1901441 biolink:NamedThing poly(hydroxyalkanoate) biosynthetic process The chemical reactions and pathways resulting in the formation of poly(hydroxyalkanoate). tmpzr1t_l9r_go_relaxed.owl poly(hydroxyalkanoate) formation|poly(hydroxyalkanoate) biosynthesis|poly(hydroxyalkanoate) anabolism|poly(hydroxyalkanoate) synthesis tt 2012-10-02T01:48:33Z biological_process owl:Class GO:1900344 biolink:NamedThing positive regulation of methane biosynthetic process from dimethyl sulfide Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide. tmpzr1t_l9r_go_relaxed.owl up-regulation of methane biosynthetic process from dimethyl sulfide|activation of methane biosynthetic process from dimethyl sulfide|up regulation of methane biosynthetic process from dimethyl sulfide|upregulation of methane biosynthetic process from dimethyl sulfide tt 2012-04-06T02:06:56Z biological_process owl:Class GO:0062207 biolink:NamedThing regulation of pattern recognition receptor signaling pathway Any process that modulates the rate, frequency or extent of a pattern recognition receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl dph 2020-02-03T14:38:53Z biological_process owl:Class GO:0007521 biolink:NamedThing muscle cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a muscle cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052600 biolink:NamedThing propane-1,3-diamine oxidase activity Catalysis of the reaction: propane-1,3-diamine + H2O + O2 = 3-aminopropanal + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl trimethylenediamine oxidase activity|1,3-diaminopropane oxidase activity|propane-1,3-diamine:oxygen oxidoreductase (deaminating) activity EC:1.4.3.22|RHEA:30895|MetaCyc:RXN-6381|KEGG_REACTION:R03139 molecular_function owl:Class GO:1903650 biolink:NamedThing negative regulation of cytoplasmic transport Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic transport. tmpzr1t_l9r_go_relaxed.owl downregulation of cytoplasmic transport|inhibition of cytoplasmic streaming|down-regulation of cytoplasmic transport|inhibition of cytoplasmic transport|down-regulation of cytoplasmic streaming|downregulation of cytoplasmic streaming|down regulation of cytoplasmic transport|negative regulation of cytoplasmic streaming|down regulation of cytoplasmic streaming jl 2014-11-24T13:38:26Z biological_process owl:Class GO:0047965 biolink:NamedThing glycoprotein O-fatty-acyltransferase activity Catalysis of the reaction: palmitoyl-CoA + mucus glycoprotein = CoA + O-palmitoylglycoprotein. tmpzr1t_l9r_go_relaxed.owl fatty-acyl-CoA:mucus-glycoprotein fatty-acyltransferase activity|protein acyltransferase activity EC:2.3.1.142|MetaCyc:GLYCOPROTEIN-O-FATTY-ACYLTRANSFERASE-RXN molecular_function owl:Class GO:0016416 biolink:NamedThing O-palmitoyltransferase activity Catalysis of the transfer of a palmitoyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2453855|Reactome:R-HSA-2466710|Reactome:R-HSA-2404137 molecular_function owl:Class GO:2000835 biolink:NamedThing negative regulation of androgen secretion Any process that stops, prevents or reduces the frequency, rate or extent of androgen secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:39:48Z biological_process owl:Class GO:0030328 biolink:NamedThing prenylcysteine catabolic process The chemical reactions and pathways resulting in the breakdown of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue. tmpzr1t_l9r_go_relaxed.owl prenylcysteine breakdown|prenylcysteine degradation|prenylcysteine catabolism biological_process owl:Class GO:1903648 biolink:NamedThing positive regulation of chlorophyll catabolic process Any process that activates or increases the frequency, rate or extent of chlorophyll catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of chlorophyll degradation|up regulation of chlorophyll breakdown|positive regulation of chlorophyll breakdown|up regulation of chlorophyll catabolic process|positive regulation of chlorophyll catabolism|activation of chlorophyll breakdown|up regulation of chlorophyll degradation|up-regulation of chlorophyll catabolic process|up-regulation of chlorophyll catabolism|activation of chlorophyll catabolism|activation of chlorophyll degradation|upregulation of chlorophyll catabolism|activation of chlorophyll catabolic process|upregulation of chlorophyll breakdown|up-regulation of chlorophyll breakdown|up regulation of chlorophyll catabolism|upregulation of chlorophyll catabolic process|positive regulation of chlorophyll degradation|upregulation of chlorophyll degradation tb 2014-11-22T00:18:34Z biological_process owl:Class GO:0018415 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide The incorporation of iron into a 3Fe-2S cluster via tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido bis-L-glutamato L-histidino nickel triiron disulphide trioxide RESID:AA0292 biological_process owl:Class GO:0033197 biolink:NamedThing response to vitamin E Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus. tmpzr1t_l9r_go_relaxed.owl response to DL-alpha-tocopherol acetate|response to O-Acetyl-alpha-tocopherol|response to DL-alpha-tocopheryl acetate biological_process owl:Class GO:0009764 biolink:NamedThing PEP carboxykinase C4 photosynthesis The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is phosphoenolpyruvate carboxykinase (PEPCK). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009760 biolink:NamedThing C4 photosynthesis The combination of atmospheric CO2 with a 3-carbon molecule phosphoenol pyruvate (PEP) in the mesophyll cells to make a 4-carbon acid which is immediately converted to malic acid. The malic acid is then passed across to the bundle sheath cells where it is broken down again to pyruvic acid and CO2. The acid is passed back to the mesophyll cells to be used again, while the CO2 is fed into the reductive pentose-phosphate cycle (Calvin cycle) and converted into sugar and starch. tmpzr1t_l9r_go_relaxed.owl Wikipedia:C4_carbon_fixation biological_process owl:Class GO:0051412 biolink:NamedThing response to corticosterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosterone stimulus. Corticosterone is a 21 carbon steroid hormone of the corticosteroid type, produced in the cortex of the adrenal glands. In many species, corticosterone is the principal glucocorticoid, involved in regulation of fuel metabolism, immune reactions, and stress responses. tmpzr1t_l9r_go_relaxed.owl response to corticosterone stimulus biological_process owl:Class GO:0051385 biolink:NamedThing response to mineralocorticoid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance. tmpzr1t_l9r_go_relaxed.owl response to mineralocorticoid stimulus biological_process owl:Class GO:1904147 biolink:NamedThing response to nonylphenol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonylphenol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-04-14T17:01:44Z biological_process owl:Class GO:0010999 biolink:NamedThing regulation of eIF2 alpha phosphorylation by heme Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a result of heme levels. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-10T11:42:10Z biological_process owl:Class GO:2001157 biolink:NamedThing negative regulation of proline catabolic process to glutamate Any process that stops, prevents or reduces the frequency, rate or extent of proline catabolic process to glutamate. tmpzr1t_l9r_go_relaxed.owl negative regulation of proline oxidation|negative regulation of proline breakdown to glutamate|negative regulation of proline degradation to glutamate mcc 2011-10-25T08:54:43Z biological_process owl:Class GO:0047290 biolink:NamedThing (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity Catalysis of the reaction: alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-D-galactosaminyl-R + CMP-N-acetyl-beta-neuraminate = alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminyl-(2->6)]-N-acetyl-D-galactosaminyl-R + CMP. tmpzr1t_l9r_go_relaxed.owl SIAT7|NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2,6-sialyltransferase activity|alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase activity|sialyltransferase 3C activity|sialyltransferase 7D activity|CMP-N-acetylneuraminate:(alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,3)-N-acetyl-D-galactosaminide alpha-2,6-N-acetylneuraminyl-transferase activity|ST6GALNAC activity|cytidine monophosphoacetylneuraminate-(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide-alpha-2,6-sialyltransferase activity|(alpha-N-acetylneuraminyl-2,3-alpha-galactosyl-1,3)-N-acetyl-galactosaminide alpha-2,6-sialyltransferase activity|(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity KEGG_REACTION:R04635|MetaCyc:2.4.99.7-RXN|Reactome:R-HSA-981809|RHEA:53896|EC:2.4.99.7 molecular_function owl:Class GO:0003961 biolink:NamedThing O-acetylhomoserine aminocarboxypropyltransferase activity Catalysis of the reaction: O-acetyl-L-homoserine + methanethiol = L-methionine + acetate. Also reacts with other thiols and H2S, producing homocysteine or thioethers. tmpzr1t_l9r_go_relaxed.owl L-methionine formation, direct, from O-acetyl-L-homoserine|O-acetylhomoserine (thiol)-lyase activity|O-acetylhomoserine sulfhydrolase activity|O-acetyl-L-homoserine sulfhydrolase activity|O-acetyl-L-homoserine acetate-lyase (adding methanethiol) activity|L-methionine biosynthetic process, direct, from O-acetyl-L-homoserine|methionine biosynthetic process, direct, from O-acetyl-L-homoserine|L-methionine anabolism, direct, from O-acetyl-L-homoserine|O-acetyl-L-homoserine:methanethiol 3-amino-3-carboxypropyltransferase activity|OAH sulfhydrylase activity|L-methionine synthesis, direct, from O-acetyl-L-homoserine MetaCyc:O-ACETYLHOMOSERINE-THIOL-LYASE-RXN|RHEA:10048|EC:2.5.1.49 Note that this function was formerly EC:4.2.99.10. GO:0019282 molecular_function owl:Class GO:1903097 biolink:NamedThing regulation of CENP-A containing nucleosome assembly Any process that modulates the rate, frequency or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres. tmpzr1t_l9r_go_relaxed.owl regulation of CenH3-containing nucleosome assembly at centromere|regulation of centromeric DNA replication-independent nucleosome assembly|regulation of centromere-specific nucleosome assembly|regulation of DNA replication-independent nucleosome assembly at centromere|regulation of centromere-specific histone exchange|regulation of CENP-A loading|regulation of centromere specific nucleosome exchange|regulation of CENP-A deposition vw 2014-06-03T16:15:30Z biological_process owl:Class GO:0019445 biolink:NamedThing tyrosine catabolic process to fumarate The chemical reactions and pathways resulting in the breakdown of tyrosine into other compounds, including fumarate. tmpzr1t_l9r_go_relaxed.owl tyrosine degradation to fumarate|tyrosine breakdown to fumarate MetaCyc:TYRFUMCAT-PWY biological_process owl:Class GO:0005779 biolink:NamedThing integral component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to peroxisomal membrane cellular_component owl:Class GO:0034411 biolink:NamedThing cell wall (1->3)-beta-D-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall 1,3-beta-glucan formation|cell wall 1,3-beta-glucan synthesis|cell wall beta-1,3-glucan formation|cell wall 1,3-beta-D-glucan biosynthetic process|cell wall 1,3-beta-glucan anabolism|cell wall 1,3-beta-glucan biosynthesis|cell wall beta-1,3-glucan biosynthetic process|cell wall beta-1,3-glucan anabolism|cell wall beta-1,3-glucan biosynthesis|cell wall beta-1,3-glucan synthesis|cell wall 1,3-beta-glucan biosynthetic process biological_process owl:Class GO:0006079 biolink:NamedThing (1->6)-beta-D-glucan catabolic process The chemical reactions and pathways resulting in the breakdown of (1->6)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl 1,6-beta-D-glucan catabolic process|1,6-beta-D-glucan breakdown|beta-1,6 glucan degradation|beta-1,6 glucan catabolism|beta-1,6 glucan breakdown|beta-1,6 glucan catabolic process|1,6-beta-D-glucan catabolism|1,6-beta-D-glucan degradation biological_process owl:Class GO:0006849 biolink:NamedThing plasma membrane pyruvate transport The directed movement of pyruvate, 2-oxopropanoate, across a plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901475 biolink:NamedThing pyruvate transmembrane transport The directed movement of pyruvate across a membrane. tmpzr1t_l9r_go_relaxed.owl pyruvate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. tb 2012-10-04T20:52:54Z biological_process owl:Class GO:0047789 biolink:NamedThing creatininase activity Catalysis of the reaction: creatinine + H(2)O = creatine. tmpzr1t_l9r_go_relaxed.owl creatinine amidohydrolase activity|creatinine hydrolase KEGG_REACTION:R01884|EC:3.5.2.10|MetaCyc:CREATININASE-RXN|RHEA:14533 molecular_function owl:Class GO:0051034 biolink:NamedThing tRNA transmembrane transporter activity Enables the transfer of tRNA, transfer ribonucleic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016212 biolink:NamedThing kynurenine-oxoglutarate transaminase activity Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl kynurenine aminotransferase activity|L-kynurenine aminotransferase activity|kynurenine-oxoglutarate aminotransferase activity|L-kynurenine:2-oxoglutarate aminotransferase activity|kynurenine--oxoglutarate aminotransferase activity|kynurenine transaminase (cyclizing)|kynurenine 2-oxoglutarate transaminase activity MetaCyc:2.6.1.7-RXN|EC:2.6.1.7|Reactome:R-HSA-893583|RHEA:20964|Reactome:R-HSA-901097|Reactome:R-HSA-893596 molecular_function owl:Class GO:0036137 biolink:NamedThing kynurenine aminotransferase activity Catalysis of the transfer of an amino group from kynurenine to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl L-kynurenine transaminase activity|kynurenine-oxo-acid transaminase activity bf 2012-03-06T02:16:48Z molecular_function owl:Class GO:0070744 biolink:NamedThing interleukin-27 complex A protein complex that is composed of an interleukin-27p28 subunit (product of the IL27 gene) and an EBI3 subunit and is secreted into the extracellular space. tmpzr1t_l9r_go_relaxed.owl IL27|EBI3|IL-27 complex|p28 Note that this heterodimeric cytokine utilizes the same EBI3 subunit (product of EBI3, Epstein-Barr virus induced gene 3) as its beta chain as IL-35 uses for its beta chain. Also note that the product of the IL27 gene is the alpha subunit of IL-27. The functional IL-27 protein complex requires both subunits. mah 2009-06-23T01:09:58Z cellular_component owl:Class GO:0103012 biolink:NamedThing ferredoxin-thioredoxin reductase activity Catalysis of the reaction: 2 H+ + 2 a reduced ferredoxin + an oxidized thioredoxin = 2 an oxidized ferredoxin + a reduced thioredoxin, involving a 4Fe-4S cluster and an adjacent active-site disulfide. tmpzr1t_l9r_go_relaxed.owl ferredoxin:thioredoxin reductase activity https://github.com/geneontology/go-ontology/issues/18939 RHEA:42336|EC:1.8.7.2|MetaCyc:RXN-9944 GO:0030385 molecular_function owl:Class GO:0016673 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, iron-sulphur protein as acceptor EC:1.8.7.- molecular_function owl:Class GO:0097684 biolink:NamedThing dinoflagellate antapex The anterior most point of a dinoflagellate hypocone. tmpzr1t_l9r_go_relaxed.owl antapex The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-12-18T09:32:10Z cellular_component owl:Class GO:0033294 biolink:NamedThing ectoine binding Binding to ectoine, 1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900808 biolink:NamedThing fumigaclavine C catabolic process The chemical reactions and pathways resulting in the breakdown of fumigaclavine C. tmpzr1t_l9r_go_relaxed.owl fumigaclavine C catabolism|fumigaclavine C breakdown|fumigaclavine C degradation di 2012-06-04T09:59:55Z biological_process owl:Class GO:1900807 biolink:NamedThing fumigaclavine C metabolic process The chemical reactions and pathways involving fumigaclavine C. tmpzr1t_l9r_go_relaxed.owl fumigaclavine C metabolism di 2012-06-04T09:59:32Z biological_process owl:Class GO:0007537 biolink:NamedThing inactivation of recombination (HML) The inactivation of recombination at sequences around a mating type donor locus, with the consequence that the other donor is the only one available for mating type switching; exemplified by the HML locus and surrounding sequences on Chromosome III in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090393 biolink:NamedThing sepal giant cell development The process aimed at the progression of a sepal giant cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl sepal giant cell formation tb 2010-12-14T04:44:34Z biological_process owl:Class GO:0150013 biolink:NamedThing negative regulation of neuron projection arborization Any process that stops, prevents or reduces the frequency, rate or extent of the process in which the anatomical structures of a neuron projection are generated and organized into branches. tmpzr1t_l9r_go_relaxed.owl negative regulation of neurite arborization|negative regulation of neurite branching|negative regulation of neuron projection branching bc 2017-12-13T16:50:53Z biological_process owl:Class GO:0051660 biolink:NamedThing establishment of centrosome localization The directed movement of the centrosome to a specific location. tmpzr1t_l9r_go_relaxed.owl centrosome positioning|establishment of centrosome localisation biological_process owl:Class GO:0090120 biolink:NamedThing lysosome to ER cholesterol transport The directed movement of cholesterol, cholest-5-en-3-beta-ol, or cholesterol-containing compounds, from the lysosome to the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl lysosome to endoplasmic reticulum cholesterol transport tb 2009-12-07T12:22:12Z biological_process owl:Class GO:0060745 biolink:NamedThing mammary gland branching involved in pregnancy The process in which the branching structure of the mammary gland duct is generated and organized as a part of pregnancy. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T08:25:19Z biological_process owl:Class GO:0030208 biolink:NamedThing dermatan sulfate biosynthetic process The chemical reactions and pathways resulting in the formation of dermatan sulfate, any glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate B biosynthetic process|dermatan sulfate anabolism|dermatan sulfate formation|dermatan sulphate biosynthesis|dermatan sulfate synthesis|chondroitin sulfate B biosynthesis|dermatan sulfate biosynthesis|dermatan sulphate biosynthetic process biological_process owl:Class GO:0030205 biolink:NamedThing dermatan sulfate metabolic process The chemical reactions and pathways involving dermatan sulfate, any of a group of glycosaminoglycans with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. They are important components of ground substance or intercellular cement of skin and some connective tissues. tmpzr1t_l9r_go_relaxed.owl dermatan sulphate metabolism|chondroitin sulfate B metabolic process|dermatan sulfate metabolism|chondroitin sulfate B metabolism|dermatan sulphate metabolic process biological_process owl:Class GO:0050780 biolink:NamedThing dopamine receptor binding Binding to a dopamine receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902099 biolink:NamedThing regulation of metaphase/anaphase transition of cell cycle Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-05-02T12:45:15Z biological_process owl:Class GO:0033045 biolink:NamedThing regulation of sister chromatid segregation Any process that modulates the frequency, rate or extent of sister chromatid segregation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900056 biolink:NamedThing negative regulation of leaf senescence Any process that stops, prevents or reduces the frequency, rate or extent of leaf senescence. tmpzr1t_l9r_go_relaxed.owl inhibition of leaf senescence|downregulation of leaf senescence|down regulation of leaf senescence|down-regulation of leaf senescence tb 2012-01-24T11:51:32Z biological_process owl:Class GO:0039724 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IKBKE activity Any process in which a virus stops, prevents, or reduces a host viral-induced cytoplasmic pattern recognition receptor signaling pathway by reducing the activity of host I-kappa-B kinase epsilon (IKBKE/IKK-epsilon/IKK-E). tmpzr1t_l9r_go_relaxed.owl inhibition of host IKBKE by virus|suppression by virus of host IKBKE activity https://github.com/geneontology/go-ontology/issues/21985 bf 2014-01-06T12:15:03Z biological_process owl:Class GO:0035699 biolink:NamedThing T-helper 17 cell extravasation The migration of a T-helper 17 cell from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-28T03:13:27Z biological_process owl:Class GO:0035684 biolink:NamedThing helper T cell extravasation The migration of a helper T cell from the blood vessels into the surrounding tissue. A helper T-cell is an effector T cell that provides help in the form of secreted cytokines to other immune cells. tmpzr1t_l9r_go_relaxed.owl T-helper cell extravasation|helper T-cell extravasation bf 2011-02-23T01:11:05Z biological_process owl:Class GO:0008512 biolink:NamedThing sulfate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl sulfate/hydrogen symporter activity|sulfate:hydrogen symporter activity|sulphate:hydrogen symporter activity molecular_function owl:Class GO:0008271 biolink:NamedThing secondary active sulfate transmembrane transporter activity Enables the secondary active transfer of sulfate from one side of a membrane to the other. Secondary active transport is the transfer of a solute across a membrane, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl sulfate porter activity|secondary active sulphate transmembrane transporter activity|sulphate porter activity molecular_function owl:Class GO:2001223 biolink:NamedThing negative regulation of neuron migration Any process that stops, prevents or reduces the frequency, rate or extent of neuron migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of neuronal migration|negative regulation of neuron guidance|negative regulation of neuron chemotaxis kmv 2011-11-17T10:01:45Z biological_process owl:Class GO:0034727 biolink:NamedThing piecemeal microautophagy of the nucleus Degradation of a cell nucleus by lysosomal microautophagy. tmpzr1t_l9r_go_relaxed.owl PMN biological_process owl:Class GO:0009924 biolink:NamedThing octadecanal decarbonylase activity Catalysis of the reaction: octadecanal = heptadecane + CO. tmpzr1t_l9r_go_relaxed.owl octadecanal alkane-lyase activity RHEA:30415|MetaCyc:OCTADECANAL-DECARBONYLASE-RXN|EC:4.1.99.5 molecular_function owl:Class GO:0071771 biolink:NamedThing aldehyde decarbonylase activity Catalysis of the reaction: a C(n) aldehyde = C(n-1) alkane + CO. tmpzr1t_l9r_go_relaxed.owl decarbonylase activity mah 2010-04-01T12:02:50Z molecular_function owl:Class GO:0043992 biolink:NamedThing histone acetyltransferase activity (H3-K9 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 9) = CoA + histone H3 N6-acetyl-L-lysine (position 9). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K9 specific) molecular_function owl:Class GO:0010365 biolink:NamedThing positive regulation of ethylene biosynthetic process Any process that activates or increases the frequency, rate or extent of an ethylene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097599 biolink:NamedThing xylanase activity Catalysis of the hydrolysis of xylans, homopolysaccharides composed of xylose residues. tmpzr1t_l9r_go_relaxed.owl xylosidase activity pr 2014-05-06T13:46:48Z molecular_function owl:Class GO:0008520 biolink:NamedThing L-ascorbate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-ascorbate(out) + Na+(out) = L-ascorbate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent L-ascorbic acid transporter TC:2.A.40.6.1 mah 2009-09-01T02:25:22Z GO:0070890 molecular_function owl:Class GO:0052594 biolink:NamedThing aminoacetone:oxygen oxidoreductase(deaminating) activity Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:AMACETOXID-RXN|KEGG_REACTION:R02529|RHEA:28186|EC:1.4.3.21 molecular_function owl:Class GO:0061217 biolink:NamedThing regulation of mesonephros development Any process that modulates the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:35:31Z biological_process owl:Class GO:0052732 biolink:NamedThing phosphoethanolamine phosphatase activity Catalysis of the reaction: O-phosphoethanolamine + H2O = ethanolamine + phosphate. tmpzr1t_l9r_go_relaxed.owl 3X11A|PHOSPHO1|phosphoethanolamine phosphohydrolase activity MetaCyc:RXN-7948|KEGG_REACTION:R06870|RHEA:16089|Reactome:R-HSA-1483096|EC:3.1.3.75 ai 2011-08-16T04:09:19Z molecular_function owl:Class GO:1905782 biolink:NamedThing positive regulation of phosphatidylserine exposure on apoptotic cell surface Any process that activates or increases the frequency, rate or extent of phosphatidylserine exposure on apoptotic cell surface. tmpzr1t_l9r_go_relaxed.owl up-regulation of phosphatidylserine exposure on apoptotic cell surface|upregulation of phosphatidylserine exposure on apoptotic cell surface|positive regulation of externalization of phosphatidylserine|up-regulation of externalization of phosphatidylserine|up regulation of externalization of phosphatidylserine|activation of phosphatidylserine exposure on apoptotic cell surface|upregulation of externalization of phosphatidylserine|up regulation of phosphatidylserine exposure on apoptotic cell surface|activation of externalization of phosphatidylserine kmv 2017-01-04T15:19:22Z biological_process owl:Class GO:0097556 biolink:NamedThing left posteriolateral flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left posteriolateral basal body and extends cytoplasmically toward the cell posterior, marking the left anterior boundary of the lateral shield and the left lateral region of the funis before exiting at the left lateral region of the cell body. tmpzr1t_l9r_go_relaxed.owl left posterolateral flagellum|left posterolateral cilium|left posteriolateral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:21:09Z cellular_component owl:Class GO:0050436 biolink:NamedThing microfibril binding Binding to a microfibril, any small fibril occurring in biological material. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'microfibril ; GO:0001527'. molecular_function owl:Class GO:0042355 biolink:NamedThing L-fucose catabolic process The chemical reactions and pathways resulting in the breakdown of L-fucose (6-deoxy-Lgalactose). tmpzr1t_l9r_go_relaxed.owl L-fucose catabolism|L-fucose degradation|L-fucose breakdown biological_process owl:Class GO:0042354 biolink:NamedThing L-fucose metabolic process The chemical reactions and pathways involving L-fucose, 6-deoxy-L-galactose, a sugar that occurs in fucans, a class of polysaccharides in seaweeds, especially Fucus species, and in the cell wall matrix of higher plants. tmpzr1t_l9r_go_relaxed.owl L-fucose metabolism biological_process owl:Class GO:0031808 biolink:NamedThing H2 histamine receptor binding Binding to a H2 histamine receptor. tmpzr1t_l9r_go_relaxed.owl H2 histamine receptor ligand molecular_function owl:Class GO:0031806 biolink:NamedThing G protein-coupled histamine receptor binding Binding to a G protein-coupled (metabotropic) histamine receptor. tmpzr1t_l9r_go_relaxed.owl metabotropic histamine receptor binding|metabotropic histamine receptor ligand|G-protein coupled histamine receptor binding molecular_function owl:Class GO:0031865 biolink:NamedThing EP2 subtype prostaglandin E2 receptor binding Binding to an EP2 subtype prostaglandin E2 receptor. tmpzr1t_l9r_go_relaxed.owl prostanoid EP2 receptor binding|EP2 subtype prostaglandin E2 receptor ligand molecular_function owl:Class GO:0042725 biolink:NamedThing thiamine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of thiamine (vitamin B1), and compounds derived from it. tmpzr1t_l9r_go_relaxed.owl thiamine and derivative catabolism|thiamine-containing compound breakdown|thiamin and derivative catabolism|thiamine-containing compound degradation|thiamine-containing compound catabolism|vitamin B1 and derivative catabolic process|thiamin-containing compound catabolic process|thiamin and derivative catabolic process|thiamine and derivative catabolic process|vitamin B1 and derivative catabolism biological_process owl:Class GO:0072529 biolink:NamedThing pyrimidine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. tmpzr1t_l9r_go_relaxed.owl pyrimidine-containing compound catabolism|pyrimidine-containing compound breakdown|pyrimidine-containing compound degradation|pyrimidine and derivative catabolic process mah 2011-01-04T03:27:51Z biological_process owl:Class GO:0099644 biolink:NamedThing protein localization to presynaptic membrane A process in which a protein is transported to, or maintained in, a location within a presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation in presynaptic membrane|protein localisation to presynaptic membrane|protein localization in presynaptic membrane biological_process owl:Class GO:1905383 biolink:NamedThing protein localization to presynapse A process in which a protein is transported to, or maintained in, a location within a presynapse. tmpzr1t_l9r_go_relaxed.owl recruitment of presynaptic proteins|protein localization in presynapse|protein localisation to presynapse|protein localisation in presynapse dos 2016-08-18T14:42:59Z biological_process owl:Class GO:0140107 biolink:NamedThing high-affinity potassium ion transmembrane transporter activity Enables the transfer of potassium ions from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl pg 2017-10-12T09:54:39Z molecular_function owl:Class GO:0044176 biolink:NamedThing host cell filopodium Thin, stiff protrusion extended by the leading edge of a motile host cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward. tmpzr1t_l9r_go_relaxed.owl host filopodium jl 2009-09-04T03:06:59Z cellular_component owl:Class GO:0044157 biolink:NamedThing host cell projection A prolongation or process extending from a host cell, e.g. a flagellum or axon. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:07:24Z cellular_component owl:Class GO:0043228 biolink:NamedThing non-membrane-bounded organelle Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes. tmpzr1t_l9r_go_relaxed.owl biological condensate|non-membrane-enclosed organelle https://github.com/geneontology/go-ontology/issues/21881 NIF_Subcellular:sao1456184038 cellular_component owl:Class GO:0009178 biolink:NamedThing pyrimidine deoxyribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine deoxyribonucleoside monophosphate catabolism|pyrimidine deoxyribonucleoside monophosphate breakdown|pyrimidine deoxyribonucleoside monophosphate degradation biological_process owl:Class GO:0031580 biolink:NamedThing membrane raft distribution The process that establishes the spatial arrangement of membrane rafts within a cellular membrane. tmpzr1t_l9r_go_relaxed.owl lipid raft distribution biological_process owl:Class GO:0044365 biolink:NamedThing envenomation resulting in modulation of platelet aggregation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change to the frequency, rate or extent of platelet aggregation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of platelet aggregation in other organism jl 2011-10-27T02:36:43Z biological_process owl:Class GO:0102263 biolink:NamedThing tRNA-dihydrouridine17 synthase activity Catalysis of the reaction: a 5,6-dihydrouracil17 in tRNA + NAD(P) <=> H+ + a uracil17 in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12455|EC:1.3.1.88 molecular_function owl:Class GO:0061520 biolink:NamedThing Langerhans cell differentiation The process in which a precursor cell type acquires the specialized features of a Langerhans cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:29:07Z biological_process owl:Class GO:0039722 biolink:NamedThing suppression by virus of host toll-like receptor signaling pathway Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of toll-like receptor (TLR) signaling in the host organism. tmpzr1t_l9r_go_relaxed.owl inhibition of host TLR pathway by virus|suppression by virus of host TLR signaling pathway bf 2014-01-06T11:39:58Z biological_process owl:Class GO:0002486 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP-independent ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in the ER following transport from the cytosol via a TAP-independent pathway. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class I via ER pathway, TAP-independent|TAP-independent endogenous peptide antigen processing and presentation via MHC class I via ER pathway|TAP-independent antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway biological_process owl:Class GO:0002484 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via an ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in the ER. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class I via ER pathway biological_process owl:Class GO:0004664 biolink:NamedThing prephenate dehydratase activity Catalysis of the reaction: prephenate = phenylpyruvate + H2O + CO2. tmpzr1t_l9r_go_relaxed.owl prephenate hydro-lyase (decarboxylating; phenylpyruvate-forming)|prephenate hydro-lyase (decarboxylating) RHEA:21648|MetaCyc:PREPHENATEDEHYDRAT-RXN|EC:4.2.1.51 molecular_function owl:Class GO:0032247 biolink:NamedThing negative regulation of purine nucleoside transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl down regulation of purine nucleoside transport|downregulation of purine nucleoside transport|down-regulation of purine nucleoside transport|inhibition of purine nucleoside transport biological_process owl:Class GO:0060696 biolink:NamedThing regulation of phospholipid catabolic process Any process that modulates the rate, frequency, or extent of phospholipid catabolism, the chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:25:45Z biological_process owl:Class GO:0090207 biolink:NamedThing regulation of triglyceride metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-23T10:35:06Z biological_process owl:Class GO:0021875 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in forebrain neuroblast division The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to the self renewal of neuroblasts in the forebrain. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway in forebrain neuroblast division biological_process owl:Class GO:1990610 biolink:NamedThing acetolactate synthase regulator activity Binds to and modulates the activity of acetolactate synthase. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-20T12:54:43Z molecular_function owl:Class GO:0018604 biolink:NamedThing 4-aminobenzoate 3,4-dioxygenase (deaminating) activity Catalysis of the reaction: 4-aminobenzoate + 2 H+ + O2 + 2 e- = NH3 + 3,4-dihydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0566|EC:1.14.12.- molecular_function owl:Class GO:0055014 biolink:NamedThing atrial cardiac muscle cell development The process whose specific outcome is the progression of an atrial cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte development|atrial heart muscle development biological_process owl:Class GO:0090445 biolink:NamedThing positive regulation of nematode larval development, heterochronic Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and increases the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-24T13:24:43Z biological_process owl:Class GO:0048055 biolink:NamedThing R2/R5 development The process whose specific outcome is the progression of the R2 and R5 pair of photoreceptors in the eye over time, from their formation to the mature structures. R2 and R5 are paired photoreceptors that contribute to the outer rhabdomeres. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002948 biolink:NamedThing archaeosine synthase activity Catalysis of the reaction: L-glutamine + 7-cyano-7-carbaguanine15 in tRNA + H2O = L-glutamate + archaeine15 in tRNA. tmpzr1t_l9r_go_relaxed.owl ArcS|glutamine:preQ0-tRNA amidinotransferase https://github.com/geneontology/go-ontology/issues/20486 Wikipedia:Archaeosine_synthase|RHEA:54084|EC:2.6.1.97 hjd 2014-08-11T10:33:59Z molecular_function owl:Class GO:0014012 biolink:NamedThing peripheral nervous system axon regeneration The regrowth of axons outside the central nervous system (outside the brain and spinal cord) following an axonal injury. tmpzr1t_l9r_go_relaxed.owl axon regeneration in peripheral nervous system biological_process owl:Class GO:0043115 biolink:NamedThing precorrin-2 dehydrogenase activity Catalysis of the reaction: NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin. tmpzr1t_l9r_go_relaxed.owl Met8p|precorrin-2 oxidase activity|1,3-dimethyluroporphyrinogen III dehydrogenase activity|CysG|dihydrosirohydrochlorin dehydrogenase activity|SirC|siroheme synthase activity|precorrin-2:NAD+ oxidoreductase activity MetaCyc:DIMETHUROPORDEHYDROG-RXN|EC:1.3.1.76|KEGG_REACTION:R03947|RHEA:15613 molecular_function owl:Class GO:0070244 biolink:NamedThing negative regulation of thymocyte apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of thymocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of thymocyte apoptosis|inhibition of thymocyte apoptosis|down-regulation of thymocyte apoptosis|negative regulation of thymocyte apoptosis|negative regulation of immature T cell apoptosis|downregulation of thymocyte apoptosis Note that a thymocyte is an immature T cell located in the thymus (CL:0000893). biological_process owl:Class GO:0097596 biolink:NamedThing ventral disc supernumerary microtubule array A partial left-handed spiral array of microtubules that lies generally dorsal to the main ventral disc microtubule array in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl ventral disk supernumerary microtubule array|supernumerary microtubule array Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:25:07Z cellular_component owl:Class GO:0015828 biolink:NamedThing tyrosine transport The directed movement of tyrosine, 2-amino-3-(4-hydroxyphenyl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-tyrosine transport biological_process owl:Class GO:0070030 biolink:NamedThing alphav-beta1 integrin-osteopontin complex A protein complex that consists of an alphav-beta1 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB1-SPP1 complex cellular_component owl:Class GO:2000998 biolink:NamedThing negative regulation of cellulose catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellulose breakdown|negative regulation of cellulose catabolism|negative regulation of cellulose degradation tt 2011-08-08T03:21:26Z biological_process owl:Class GO:0050677 biolink:NamedThing positive regulation of urothelial cell proliferation Any process that activates or increases the rate or extent of urothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl up-regulation of urothelial cell proliferation|up regulation of urothelial cell proliferation|stimulation of urothelial cell proliferation|activation of urothelial cell proliferation|upregulation of urothelial cell proliferation biological_process owl:Class GO:2000941 biolink:NamedThing positive regulation of plant-type cell wall cellulose catabolic process Any process that activates or increases the frequency, rate or extent of plant-type cell wall cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of plant-type cell wall polysaccharide breakdown tt 2011-08-01T02:07:21Z biological_process owl:Class GO:0097195 biolink:NamedThing pilomotor reflex The reflex process in which the arrectores pilorum (hair follicle) muscles contract and cause the hair to stand erect. tmpzr1t_l9r_go_relaxed.owl horripilation|goosebump reflex|piloerection pr 2011-12-01T05:08:14Z biological_process owl:Class GO:0010353 biolink:NamedThing response to trehalose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus. tmpzr1t_l9r_go_relaxed.owl response to trehalose stimulus biological_process owl:Class GO:0048612 biolink:NamedThing post-embryonic ectodermal digestive tract development The process, occurring during the post-embryonic phase, whose specific outcome is the progression of the ectodermal gut over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl post-embryonic ectodermal gut development biological_process owl:Class GO:0016296 biolink:NamedThing palmitoyl-[acyl-carrier-protein] hydrolase activity Catalysis of the reaction: palmitoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + palmitate. tmpzr1t_l9r_go_relaxed.owl palmitoyl-[acyl-carrier protein] hydrolase activity|palmitoyl-ACP hydrolase activity MetaCyc:RXN-9549|KEGG_REACTION:R08162|RHEA:41932|EC:3.1.2.14 molecular_function owl:Class GO:0010796 biolink:NamedThing regulation of multivesicular body size Any process that modulates the volume of a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045029 biolink:NamedThing G protein-coupled UDP receptor activity Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UDP. tmpzr1t_l9r_go_relaxed.owl UDP-activated nucleotide receptor activity molecular_function owl:Class GO:1903034 biolink:NamedThing regulation of response to wounding Any process that modulates the frequency, rate or extent of response to wounding. tmpzr1t_l9r_go_relaxed.owl regulation of physiological response to wounding kmv 2014-05-18T01:28:46Z biological_process owl:Class GO:0031072 biolink:NamedThing heat shock protein binding Binding to a heat shock protein, a protein synthesized or activated in response to heat shock. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061363 biolink:NamedThing negative regulation of progesterone biosynthesis involved in luteolysis Any process that decreases the rate, frequency or extent of the biosynthesis of progesterone biosynthesis that contributes to luteolysis. tmpzr1t_l9r_go_relaxed.owl functional luteolysis dph 2010-10-14T03:08:41Z biological_process owl:Class GO:0099065 biolink:NamedThing integral component of spine apparatus membrane The component of the spine apparatus membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052318 biolink:NamedThing regulation of phytoalexin metabolic process Any process that modulates the frequency, rate or extent of phytoalexin metabolism, the chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl regulation of phytoalexin metabolism biological_process owl:Class GO:0043497 biolink:NamedThing regulation of protein heterodimerization activity Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer. tmpzr1t_l9r_go_relaxed.owl Note that protein heterodimerization is a molecular function: 'protein heterodimerization activity ; GO:0046982'. biological_process owl:Class GO:0006055 biolink:NamedThing CMP-N-acetylneuraminate biosynthetic process The chemical reactions and pathways resulting in the formation of CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate synthesis|CMP-N-acetylneuraminate anabolism|CMP-N-acetylneuraminate biosynthesis|CMP-N-acetylneuraminate formation biological_process owl:Class GO:0031111 biolink:NamedThing negative regulation of microtubule polymerization or depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of microtubule polymerization or depolymerization. tmpzr1t_l9r_go_relaxed.owl downregulation of microtubule polymerization or depolymerization|down-regulation of microtubule polymerization or depolymerization|down regulation of microtubule polymerization or depolymerization|inhibition of microtubule polymerization or depolymerization biological_process owl:Class GO:0047974 biolink:NamedThing guanosine deaminase activity Catalysis of the reaction: guanosine + H2O = xanthosine + NH3. tmpzr1t_l9r_go_relaxed.owl guanosine aminohydrolase activity|guanosine aminase activity EC:3.5.4.15|MetaCyc:GUANOSINE-DEAMINASE-RXN|RHEA:12861 molecular_function owl:Class GO:0071758 biolink:NamedThing IgW immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgW isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgW immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgW immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Note that IgW is found in fish. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:1904423 biolink:NamedThing dehydrodolichyl diphosphate synthase complex A protein complex which is capable of dehydrodolichyl diphosphate synthase activity. tmpzr1t_l9r_go_relaxed.owl ew 2015-07-02T19:51:40Z cellular_component owl:Class GO:0090422 biolink:NamedThing thiamine pyrophosphate transmembrane transporter activity Enables the transfer of thiamine pyrophosphate a substance from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl thiamine pyrophosphate transporter activity|thiamine diphosphate transporter activity Reactome:R-HSA-8875838 tb 2012-04-17T12:28:11Z molecular_function owl:Class GO:0048617 biolink:NamedThing embryonic foregut morphogenesis The process in which the anatomical structures of the foregut are generated and organized, during the embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006743 biolink:NamedThing ubiquinone metabolic process The chemical reactions and pathways involving ubiquinone, a lipid-soluble electron-transporting coenzyme. tmpzr1t_l9r_go_relaxed.owl coenzyme Q metabolism|ubiquinone metabolism|coenzyme Q metabolic process biological_process owl:Class GO:0070782 biolink:NamedThing phosphatidylserine exposure on apoptotic cell surface A phospholipid scrambling process that results in the appearance of phosphatidylserine on the outer leaflet of the plasma membrane of an apoptotic cell, which acts as an 'eat-me' signal for engulfing cells. Phosphatidylserine is exposed on the apoptotic cell surface by a phospholipid scramblase activity. tmpzr1t_l9r_go_relaxed.owl externalization of phosphatidylserine In normal cells, phosphatidylserine residues are found exclusively on the inner side of the cellular membrane. During apoptosis, phosphatidylserine is transported to the outer cell surface by scramblase proteins. This event acts as an "eat-me" signal for macrophages to dispose of the dying cell. When annotating to this term, curators should be aware of the following: 1) phosphatidylserine exposure on the cell surface can occur in circumstances other than apoptosis (for example, when blood platelets are activated, they expose phosphatidylserine to trigger the clotting system, see PMID:21107324). Do not annotate to GO:0070782 unless phosphatidylserine exposure is shown to be part of an apoptotic event. 2) Caution should be applied when a study quotes annexin V assays. The annexin A5 protein binds to phosphatidylserine-containing membrane surfaces, which are usually only present on the inner leaflet of the membrane. However, in cells undergoing apoptosis, phosphatidylserine becomes exposed on the outer leaflet of the membrane. A positive annexin assay can therefore be linked to apoptotic death, but it shouldn't be confused with molecular events strictly involved in the process of phosphatidylserine exposure. mah 2009-07-02T02:41:44Z biological_process owl:Class GO:0017121 biolink:NamedThing plasma membrane phospholipid scrambling The movement of a population of phospholipid molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet, resulting in loss of lipid asymmetry and surface exposure of phosphatidylserine (PS) and phosphatidylethanolamine (PE). tmpzr1t_l9r_go_relaxed.owl phospholipid scrambling|PL scrambling Note that this term describes the trans-bilayer motion of a population of phospholipid molecules, and should not be confused with 'phospholipid translocation ; GO:0045332'. biological_process owl:Class GO:0006875 biolink:NamedThing cellular metal ion homeostasis Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular heavy metal ion homeostasis biological_process owl:Class GO:0045960 biolink:NamedThing positive regulation of complement activation, classical pathway Any process that activates or increases the frequency, rate or extent of complement activation by the classical pathway. tmpzr1t_l9r_go_relaxed.owl activation of complement activation, classical pathway|up regulation of complement activation, classical pathway|upregulation of complement activation, classical pathway|positive regulation of complement cascade, classical pathway|stimulation of complement activation, classical pathway|up-regulation of complement activation, classical pathway biological_process owl:Class GO:1904442 biolink:NamedThing negative regulation of thyroid gland epithelial cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of thyroid gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of Hurthle cell proliferation|downregulation of Hurthle cell proliferation|inhibition of thyroid follicular cell proliferation|down-regulation of thyroid follicular cell proliferation|negative regulation of Hurthle cell proliferation|down regulation of thyroid follicular cell proliferation|negative regulation of thyroid follicular cell proliferation|down-regulation of thyroid gland epithelial cell proliferation|down regulation of thyroid gland epithelial cell proliferation|downregulation of thyroid gland epithelial cell proliferation|inhibition of Hurthle cell proliferation|down-regulation of Hurthle cell proliferation|downregulation of thyroid follicular cell proliferation|inhibition of thyroid gland epithelial cell proliferation sl 2015-07-06T15:41:15Z biological_process owl:Class GO:0097254 biolink:NamedThing renal tubular secretion Secretion of substances from peritubular capillaries into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-05T02:03:58Z biological_process owl:Class GO:1900890 biolink:NamedThing regulation of pentadecane metabolic process Any process that modulates the frequency, rate or extent of pentadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of pentadecane metabolism tt 2012-06-13T03:05:48Z biological_process owl:Class GO:2000235 biolink:NamedThing regulation of tRNA processing Any process that modulates the frequency, rate or extent of tRNA processing. tmpzr1t_l9r_go_relaxed.owl regulation of tRNA maturation mah 2010-11-10T12:15:08Z biological_process owl:Class GO:0038097 biolink:NamedThing positive regulation of mast cell activation by Fc-epsilon receptor signaling pathway An Fc-epsilon receptor signaling pathway that results in the change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors. tmpzr1t_l9r_go_relaxed.owl positive regulation of mast cell activation by Fc-epsilon receptor signalling pathway|Fc epsilon RI-mediated mast cell activation|Fc epsilon RI-dependent mast cell activation bf 2012-02-16T05:30:09Z biological_process owl:Class GO:0061657 biolink:NamedThing UFM1 conjugating enzyme activity Isoenergetic transfer of UFM1 from one protein to another via the reaction X-UFM1 + Y -> Y-UFM1 + X, where both the X-UFM1 and Y-UFM1 linkages are thioester bonds between the C-terminal amino acid of UFM1 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:35:13Z molecular_function owl:Class GO:0061650 biolink:NamedThing ubiquitin-like protein conjugating enzyme activity Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y -> Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl small conjugating protein conjugating enzyme activity|E2 dph 2014-11-06T13:15:27Z molecular_function owl:Class GO:0102722 biolink:NamedThing gamma-hydroxybutyrate dehydrogenase activity (NAD(P)-dependent Catalysis of the reaction: 4-hydroxybutyrate + NAD(P) = 4-oxobutanoate + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6903 molecular_function owl:Class GO:0015967 biolink:NamedThing diadenosine tetraphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine tetraphosphate degradation|diadenosine tetraphosphate catabolism|diadenosine tetraphosphate breakdown biological_process owl:Class GO:0032975 biolink:NamedThing amino acid transmembrane import into vacuole The directed movement of amino acids into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar amino acid import biological_process owl:Class GO:0098886 biolink:NamedThing modification of dendritic spine Any process that modifies the structure of a dendritic spine. tmpzr1t_l9r_go_relaxed.owl This class does not cover assembly or disassembly of dendritic spines, only the modification/remodelling of existing ones. biological_process owl:Class GO:0061644 biolink:NamedThing protein localization to CENP-A containing chromatin Any process in which a protein is transported to, or maintained at, CENP-A containing chromatin. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-29T12:17:05Z biological_process owl:Class GO:0071459 biolink:NamedThing protein localization to chromosome, centromeric region Any process in which a protein is transported to, or maintained at, the centromeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl protein localization to centromere|protein localization to chromosome, centric region|protein localisation to chromosome, centromeric region mah 2009-12-17T02:11:23Z biological_process owl:Class GO:0070165 biolink:NamedThing positive regulation of adiponectin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of adiponectin from a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of adiponectin secretion|upregulation of adiponectin secretion|up regulation of adiponectin secretion|up-regulation of adiponectin secretion|activation of adiponectin secretion biological_process owl:Class GO:0015151 biolink:NamedThing alpha-glucoside transmembrane transporter activity Enables the transfer of alpha-glucosides from one side of a membrane to the other. Alpha-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in an alpha configuration. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034956 biolink:NamedThing diphenyl ether 1,2-dioxygenase activity Catalysis of the reaction: diphenyl ether + NADH + O2 + H+ = phenol + catechol + NAD+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1453|EC:1.13.11.- molecular_function owl:Class GO:0003987 biolink:NamedThing acetate-CoA ligase activity Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl activating enzyme|short chain fatty acyl-CoA synthetase activity|short-chain acyl-coenzyme A synthetase activity|acetic thiokinase activity|acetyl CoA ligase activity|acetate thiokinase activity|acetyl-CoA synthase activity|acetate to acetyl-CoA|acetyl coenzyme A synthetase activity|acyl-activating enzyme activity|ACS|acetyl-coenzyme A synthase activity|acetyl CoA synthase activity|acetyl-CoA synthetase activity|acetate:CoA ligase (AMP-forming)|acetyl-activating enzyme activity Reactome:R-HSA-71735|EC:6.2.1.1|Reactome:R-HSA-449911|MetaCyc:ACETATE--COA-LIGASE-RXN|RHEA:23176|Reactome:R-HSA-8875071 molecular_function owl:Class GO:0040037 biolink:NamedThing negative regulation of fibroblast growth factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of FGF receptor signaling pathway|down-regulation of fibroblast growth factor receptor signaling pathway|negative regulation of FGFR signaling pathway|negative regulation of FGF receptor signalling pathway|inhibition of fibroblast growth factor receptor signaling pathway|downregulation of fibroblast growth factor receptor signaling pathway|down regulation of fibroblast growth factor receptor signaling pathway biological_process owl:Class GO:0048204 biolink:NamedThing vesicle targeting, inter-Golgi cisterna The process in which vesicles are directed to specific destination membranes during transport from one Golgi cisterna to another. tmpzr1t_l9r_go_relaxed.owl inter-Golgi cisterna targeting biological_process owl:Class GO:1901318 biolink:NamedThing negative regulation of flagellated sperm motility Any process that stops, prevents or reduces the frequency, rate or extent of flagellated sperm motility. tmpzr1t_l9r_go_relaxed.owl negative regulation of sperm motility|down regulation of sperm motility|down regulation of sperm movement|down-regulation of sperm movement|downregulation of sperm motility|downregulation of sperm movement|inhibition of sperm motility|inhibition of sperm movement|down-regulation of sperm motility|negative regulation of sperm movement hjd 2012-08-22T20:50:35Z biological_process owl:Class GO:1901317 biolink:NamedThing regulation of flagellated sperm motility Any process that modulates the frequency, rate or extent of flagellated sperm motility. tmpzr1t_l9r_go_relaxed.owl regulation of sperm motility|regulation of sperm movement hjd 2012-08-22T20:50:14Z biological_process owl:Class GO:0018922 biolink:NamedThing iprodione metabolic process The chemical reactions and pathways involving prodione, a colorless, odorless crystal. It is used as a dicarboximide contact fungicide to control a wide variety of crop diseases by inhibiting the germination of spores and the growth of the fungal mat (mycelium). tmpzr1t_l9r_go_relaxed.owl iprodione metabolism UM-BBD_pathwayID:ipd biological_process owl:Class GO:0003025 biolink:NamedThing regulation of systemic arterial blood pressure by baroreceptor feedback The neural regulation of blood pressure in which baroreceptors sense the amount of stretch occurring in vessels and respond to the input via central nervous system control. tmpzr1t_l9r_go_relaxed.owl baroreceptor regulation of systemic arterial blood pressure biological_process owl:Class GO:1903653 biolink:NamedThing modulation by symbiont of host cell motility Modulation of host cell motility by a symbiont of that host. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host cell motility|modulation by symbiont of host cell locomotion|modulation by symbiont of host cell movement jl 2014-11-24T17:37:56Z biological_process owl:Class GO:0036258 biolink:NamedThing multivesicular body assembly The aggregation, arrangement and bonding together of a set of components to form a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm. tmpzr1t_l9r_go_relaxed.owl MVB biogenesis|MVB formation|multivesicular body biogenesis bf 2012-06-15T01:12:24Z biological_process owl:Class GO:0016605 biolink:NamedThing PML body A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection. tmpzr1t_l9r_go_relaxed.owl ND10|nuclear dot|PML NB|PML nuclear body cellular_component owl:Class GO:1900898 biolink:NamedThing positive regulation of heptadecane biosynthetic process Any process that activates or increases the frequency, rate or extent of heptadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of heptadecane formation|up-regulation of heptadecane synthesis|up-regulation of heptadecane biosynthetic process|upregulation of heptadecane biosynthesis|activation of heptadecane biosynthetic process|up-regulation of heptadecane biosynthesis|up regulation of heptadecane biosynthetic process|activation of heptadecane anabolism|up regulation of heptadecane synthesis|up-regulation of heptadecane anabolism|positive regulation of heptadecane synthesis|up regulation of heptadecane anabolism|positive regulation of heptadecane formation|upregulation of heptadecane formation|upregulation of heptadecane anabolism|activation of heptadecane biosynthesis|up-regulation of heptadecane formation|activation of heptadecane synthesis|up regulation of heptadecane formation|up regulation of heptadecane biosynthesis|positive regulation of heptadecane biosynthesis|positive regulation of heptadecane anabolism|upregulation of heptadecane biosynthetic process|upregulation of heptadecane synthesis tt 2012-06-13T03:28:10Z biological_process owl:Class GO:1901816 biolink:NamedThing beta-zeacarotene metabolic process The chemical reactions and pathways involving beta-zeacarotene. tmpzr1t_l9r_go_relaxed.owl beta-zeacarotene metabolism yaf 2013-01-22T10:42:03Z biological_process owl:Class GO:0071249 biolink:NamedThing cellular response to nitrate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T03:02:06Z biological_process owl:Class GO:0021778 biolink:NamedThing oligodendrocyte cell fate specification The process in which a cell becomes capable of differentiating autonomously into an oligodendrocyte in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010763 biolink:NamedThing positive regulation of fibroblast migration Any process that increases the rate, frequency or extent of fibroblast cell migration. Fibroblast cell migration is accomplished by extension and retraction of a pseudopodium. tmpzr1t_l9r_go_relaxed.owl positive regulation of fibroblast cell migration biological_process owl:Class GO:0090710 biolink:NamedThing phosphomevalonate decarboxylase activity Catalysis of the reaction: ATP + (R)-mevalonate 5-phosphate = ADP + isopentenyl phosphate + CO2 + phosphate. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-21T15:59:34Z molecular_function owl:Class GO:0035740 biolink:NamedThing CD8-positive, alpha-beta T cell proliferation The expansion of a CD8-positive, alpha-beta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T02:13:54Z biological_process owl:Class GO:1990164 biolink:NamedThing histone H2A phosphorylation The modification of histone H2A by the addition of a phosphate group. tmpzr1t_l9r_go_relaxed.owl mah 2013-08-08T11:13:25Z biological_process owl:Class GO:0072584 biolink:NamedThing caveolin-mediated endocytosis An endocytosis process that begins when material is taken up into plasma membrane caveolae, which then pinch off to form endocytic caveolar carriers. tmpzr1t_l9r_go_relaxed.owl caveolae-mediated endocytosis|caveolae-dependent endocytosis|caveolin-dependent endocytosis mah 2011-02-08T04:08:33Z biological_process owl:Class GO:0106392 biolink:NamedThing bI3 intron splicing complex Aprotein complex required for the splicing of intron 3 of the cytochrome b (COB) gene. In S. cerevisiae, the complex contains the maturase bI3 (which derives from one of the products of the splicing), the MRS1 cofactor and the intron 4 of the cytochrome b pre-mRNA. The two proteins stimulate the ribozyme activity of the pre-mRNA which autoctalyse a group I intron splicing. tmpzr1t_l9r_go_relaxed.owl Intact:EBI-16426213 hjd 2021-10-08T14:43:33Z cellular_component owl:Class GO:0008458 biolink:NamedThing carnitine O-octanoyltransferase activity Catalysis of the reaction: (R)-carnitine + octanoyl-CoA = (S)-octanoylcarnitine + CoA. tmpzr1t_l9r_go_relaxed.owl overt mitochondrial carnitine palmitoyltransferase|medium-chain/long-chain carnitine acyltransferase activity|octanoyl-CoA:L-carnitine O-octanoyltransferase activity|easily solubilized mitochondrial carnitine palmitoyltransferase|carnitine medium-chain acyltransferase activity EC:2.3.1.137|Reactome:R-HSA-390281|MetaCyc:CARNITINE-O-OCTANOYLTRANSFERASE-RXN|KEGG_REACTION:R03779|RHEA:17177 molecular_function owl:Class GO:0016406 biolink:NamedThing carnitine O-acyltransferase activity Catalysis of the transfer of an acyl group to an oxygen atom on the carnitine molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043517 biolink:NamedThing positive regulation of DNA damage response, signal transduction by p53 class mediator Any process that activates, maintains or increases the rate of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl activation of DNA damage response, signal transduction by p53 class mediator|upregulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of p53 induced by DNA damage response|up regulation of DNA damage response, signal transduction by p53 class mediator|stimulation of DNA damage response, signal transduction by p53 class mediator|up-regulation of DNA damage response, signal transduction by p53 class mediator biological_process owl:Class GO:0055070 biolink:NamedThing copper ion homeostasis Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl copper homeostasis biological_process owl:Class GO:0050610 biolink:NamedThing methylarsonate reductase activity Catalysis of the reaction: 2 glutathione + H(+) + methylarsonate = glutathione disulfide + H(2)O + methylarsonous acid. tmpzr1t_l9r_go_relaxed.owl glutathione:methylarsonate oxidoreductase activity|MMA(V) reductase activity EC:1.20.4.2|UM-BBD_reactionID:r0837|Reactome:R-HSA-5696230|RHEA:15969|MetaCyc:1.20.4.2-RXN|KEGG_REACTION:R05748 molecular_function owl:Class GO:0030614 biolink:NamedThing oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a disulfide. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on phosphorus or arsenic in donors, with disulphide as acceptor EC:1.20.4.- molecular_function owl:Class GO:0090693 biolink:NamedThing plant organ senescence The process that occurs in a plant organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T10:50:29Z biological_process owl:Class GO:0015183 biolink:NamedThing L-aspartate transmembrane transporter activity Enables the transfer of L-aspartate from one side of a membrane to the other. L-aspartate is the anion derived from aspartic acid. tmpzr1t_l9r_go_relaxed.owl glutamate/aspartate porter activity|L-aspartate transporter activity|glutamate/aspartate:sodium symporter activity molecular_function owl:Class GO:2001059 biolink:NamedThing D-tagatose 6-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a D-tagatose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-tagatose 6-phosphate catabolism UniPathway:UPA00704 jl 2011-09-09T03:21:33Z biological_process owl:Class GO:0071589 biolink:NamedThing pyridine nucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any pyridine nucleoside, one of a family of organic molecules consisting of a pyridine base covalently bonded to a sugar, usually ribose. tmpzr1t_l9r_go_relaxed.owl pyridine nucleoside anabolism|pyridine nucleoside synthesis|pyridine nucleoside biosynthesis|pyridine nucleoside formation mah 2010-01-29T11:35:30Z biological_process owl:Class GO:0018930 biolink:NamedThing 3-methylquinoline metabolic process The chemical reactions and pathways involving 3-methylquinoline, C10H9N, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring. tmpzr1t_l9r_go_relaxed.owl 3-methylquinoline metabolism UM-BBD_pathwayID:mqn biological_process owl:Class GO:0050927 biolink:NamedThing positive regulation of positive chemotaxis Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl upregulation of positive chemotaxis|stimulation of positive chemotaxis|up-regulation of positive chemotaxis|up regulation of positive chemotaxis|activation of positive chemotaxis biological_process owl:Class GO:0110071 biolink:NamedThing cellularization cleavage furrow invagination front The base of the cellularization invagination or cleavage furrow most distal to the original multi-nucleate cell or syncytium plasma membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14543 kmv 2017-11-22T20:13:21Z cellular_component owl:Class GO:0016538 biolink:NamedThing cyclin-dependent protein serine/threonine kinase regulator activity Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. tmpzr1t_l9r_go_relaxed.owl G1/S-specific cyclin|G2/M-specific cyclin|cyclin-dependent protein kinase, intrinsic regulator activity|cyclin-dependent protein kinase regulator activity|cyclin EC:2.7.1.-|Reactome:R-HSA-3215385 GO:0003753|GO:0003752|GO:0003751 molecular_function owl:Class GO:0032347 biolink:NamedThing regulation of aldosterone biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047652 biolink:NamedThing allantoate deiminase activity Catalysis of the reaction: allantoate + H2O + H+ = CO2 + NH3 + ureidoglycine. tmpzr1t_l9r_go_relaxed.owl allantoate amidohydrolase activity|allantoate amidinohydrolase (decarboxylating) EC:3.5.3.9|RHEA:27485|MetaCyc:ALLANTOATE-DEIMINASE-RXN molecular_function owl:Class GO:0052080 biolink:NamedThing modulation by symbiont of host innate immune response MAPK kinase signaling Any process in which an organism modulates the frequency, rate or extent of a host MAP kinase-mediated signal transduction pathway during the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|modulation by organism of defense-related MAP kinase-mediated signal transduction pathway in other organism involved in symbiotic interaction|modulation of defense-related host mitogen activated protein kinase-mediated signal transduction pathway by organism|modulation of defense-related host MAPK-mediated signal transduction pathway by organism https://github.com/geneontology/go-ontology/issues/19235 GO:0052277 biological_process owl:Class GO:1900596 biolink:NamedThing (+)-kotanin biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-kotanin. tmpzr1t_l9r_go_relaxed.owl (+)-kotanin synthesis|(+)-kotanin formation|(+)-kotanin biosynthesis|(+)-kotanin anabolism di 2012-05-15T06:54:47Z biological_process owl:Class GO:0050285 biolink:NamedThing sinapine esterase activity Catalysis of the reaction: O-sinapoylcholine + H(2)O = choline + H(+) + sinapate. tmpzr1t_l9r_go_relaxed.owl aromatic choline esterase activity|sinapoylcholine sinapohydrolase activity EC:3.1.1.49|RHEA:10016|KEGG_REACTION:R02381|MetaCyc:SINAPINE-ESTERASE-RXN molecular_function owl:Class GO:0051475 biolink:NamedThing glucosylglycerol transport The directed movement of glucosylglycerol, alpha-D-glucopyranosyl-alpha-(1,2)-glycerol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050965 biolink:NamedThing detection of temperature stimulus involved in sensory perception of pain The series of events involved in the perception of pain in which a temperature stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of pain, sensory detection of temperature stimulus|thermal nociception|sensory perception of pain, sensory detection of thermal stimulus|sensory perception of pain, sensory transduction of thermal stimulus|sensory transduction of thermal stimulus during sensory perception of pain|perception of pain, detection of temperature stimulus|perception of pain, sensory transduction of temperature stimulus|sensory detection of thermal stimulus during sensory perception of pain|sensory detection of temperature stimulus during perception of pain|sensory transduction of temperature stimulus during perception of pain biological_process owl:Class GO:0062149 biolink:NamedThing detection of stimulus involved in sensory perception of pain The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl dph 2019-09-13T13:48:47Z biological_process owl:Class GO:2001270 biolink:NamedThing regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl regulation of effector caspase activity pr 2011-12-13T07:59:36Z biological_process owl:Class GO:1904342 biolink:NamedThing negative regulation of colon smooth muscle contraction Any process that stops, prevents or reduces the frequency, rate or extent of colon smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl down-regulation of colon smooth muscle contraction|downregulation of colon smooth muscle contraction|inhibition of colon smooth muscle contraction|down regulation of colon smooth muscle contraction sl 2015-06-11T21:17:05Z biological_process owl:Class GO:1901714 biolink:NamedThing positive regulation of urea catabolic process Any process that activates or increases the frequency, rate or extent of urea catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of urea catabolism|activation of urea catabolic process|up-regulation of urea degradation|activation of urea degradation|upregulation of urea breakdown|positive regulation of urea degradation|activation of urea decomposition|up-regulation of urea decomposition|activation of urea catabolism|up regulation of urea degradation|up-regulation of urea breakdown|up regulation of urea catabolism|up-regulation of urea catabolic process|positive regulation of urea decomposition|upregulation of urea decomposition|up regulation of urea breakdown|up regulation of urea decomposition|positive regulation of urea breakdown|activation of urea breakdown|up-regulation of urea catabolism|upregulation of urea degradation|up regulation of urea catabolic process|upregulation of urea catabolic process|upregulation of urea catabolism mcc 2012-12-19T16:12:18Z biological_process owl:Class GO:1902363 biolink:NamedThing regulation of protein localization to spindle pole body Any process that modulates the frequency, rate or extent of protein localization to spindle pole body. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to spindle pole body vw 2013-08-15T16:38:07Z biological_process owl:Class GO:0071870 biolink:NamedThing cellular response to catecholamine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catecholamine stimulus. A catecholamine is any of a group of biogenic amines that includes 4-(2-aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-13T02:54:50Z biological_process owl:Class GO:0071869 biolink:NamedThing response to catecholamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catecholamine stimulus. A catecholamine is any of a group of biogenic amines that includes 4-(2-aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution. tmpzr1t_l9r_go_relaxed.owl response to catecholamine stimulus mah 2010-09-13T02:51:13Z biological_process owl:Class GO:0008743 biolink:NamedThing L-threonine 3-dehydrogenase activity Catalysis of the reaction: L-threonine + NAD(+) = L-2-amino-3-oxobutanoate + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl threonine 3-dehydrogenase activity|L-threonine dehydrogenase activity|threonine dehydrogenase activity|L-threonine:NAD+ oxidoreductase activity KEGG_REACTION:R01465|Reactome:R-HSA-6798667|MetaCyc:THREODEHYD-RXN|RHEA:13161|EC:1.1.1.103 molecular_function owl:Class GO:1900028 biolink:NamedThing negative regulation of ruffle assembly Any process that stops, prevents or reduces the frequency, rate or extent of ruffle assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of membrane ruffling|negative regulation of membrane ruffling|down regulation of ruffle assembly|negative regulation of membrane ruffle formation|down regulation of membrane ruffle formation yaf 2012-01-12T05:00:53Z biological_process owl:Class GO:2001018 biolink:NamedThing negative regulation of retrograde axon cargo transport Any process that stops, prevents or reduces the frequency, rate or extent of retrograde axon cargo transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of retrograde axonal transport kmv 2011-08-11T09:44:46Z biological_process owl:Class GO:1904178 biolink:NamedThing negative regulation of adipose tissue development Any process that stops, prevents or reduces the frequency, rate or extent of adipose tissue development. tmpzr1t_l9r_go_relaxed.owl down regulation of adipose tissue development|down-regulation of adipose tissue development|down-regulation of adipogenesis|down regulation of adipogenesis|downregulation of adipose tissue development|downregulation of adipogenesis|negative regulation of adipogenesis|inhibition of adipogenesis|inhibition of adipose tissue development sl 2015-04-29T20:01:07Z biological_process owl:Class GO:0030035 biolink:NamedThing microspike assembly Formation of a microspike, a dynamic, actin-rich projection extending from the surface of a migrating animal cell. tmpzr1t_l9r_go_relaxed.owl microspike formation|microspike biogenesis|microspike biosynthesis Although in some literature 'microspike' and 'filopodium' are used synonymously, in GO microspike refers to a cell projection that is distinct from a filopodium. For the assembly of filopodia, use 'filopodium assembly ; GO:0046847'. biological_process owl:Class GO:1900716 biolink:NamedThing regulation of violaceol II biosynthetic process Any process that modulates the frequency, rate or extent of violaceol II biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of violaceol II formation|regulation of violaceol II biosynthesis|regulation of violaceol II anabolism|regulation of violaceol II synthesis di 2012-05-22T05:05:37Z biological_process owl:Class GO:1901386 biolink:NamedThing negative regulation of voltage-gated calcium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of depolarization-activated voltage gated calcium channel activity|inhibition of depolarization-activated calcium channel|down regulation of voltage gated calcium channel activity|inhibition of voltage gated calcium channel activity|downregulation of voltage-gated calcium ion channel activity|down-regulation of voltage gated calcium channel activity|negative regulation of voltage-dependent calcium channel activity|downregulation of voltage-sensitive calcium channel|downregulation of depolarization-activated voltage gated calcium channel activity|inhibition of depolarization-activated voltage gated calcium channel activity|down-regulation of depolarization-activated voltage-gated calcium channel activity|down regulation of depolarization-activated calcium channel|down-regulation of voltage-dependent calcium channel activity|inhibition of depolarization-activated voltage-gated calcium channel|negative regulation of dihydropyridine-sensitive calcium channel activity|inhibition of voltage-sensitive calcium channel|negative regulation of voltage-gated calcium ion channel activity|negative regulation of voltage-sensitive calcium channel|down-regulation of voltage-sensitive calcium channel|downregulation of voltage-gated calcium channel activity|down regulation of voltage-dependent calcium channel activity|down-regulation of voltage-gated calcium ion channel activity|down regulation of depolarization-activated voltage gated calcium channel activity|down-regulation of dihydropyridine-sensitive calcium channel activity|downregulation of dihydropyridine-sensitive calcium channel activity|negative regulation of depolarization-activated voltage-gated calcium channel|downregulation of depolarization-activated voltage-gated calcium channel activity|down regulation of depolarization-activated voltage-gated calcium channel|inhibition of dihydropyridine-sensitive calcium channel activity|inhibition of voltage-dependent calcium channel activity|down-regulation of depolarization-activated voltage-gated calcium channel|inhibition of voltage-gated calcium channel activity|negative regulation of depolarization-activated calcium channel|down regulation of voltage-gated calcium ion channel activity|down regulation of voltage-sensitive calcium channel|downregulation of depolarization-activated calcium channel|downregulation of voltage-dependent calcium channel activity|down regulation of dihydropyridine-sensitive calcium channel activity|downregulation of depolarization-activated voltage-gated calcium channel|negative regulation of depolarization-activated voltage-gated calcium channel activity|negative regulation of depolarization-activated voltage gated calcium channel activity|negative regulation of voltage gated calcium channel activity|down regulation of depolarization-activated voltage-gated calcium channel activity|down-regulation of voltage-gated calcium channel activity|down regulation of voltage-gated calcium channel activity|inhibition of voltage-gated calcium ion channel activity|downregulation of voltage gated calcium channel activity|inhibition of depolarization-activated voltage-gated calcium channel activity|down-regulation of depolarization-activated calcium channel vk 2012-10-01T10:35:15Z biological_process owl:Class GO:0019615 biolink:NamedThing catechol catabolic process, ortho-cleavage The chemical reactions and pathways resulting in the breakdown of catechol via the ortho-cleavage pathway, in which the catechol aromatic ring is broken between the two carbon atoms bearing hydroxyl groups. tmpzr1t_l9r_go_relaxed.owl catechol breakdown, ortho-cleavage|catechol degradation, ortho-cleavage MetaCyc:CATECHOL-ORTHO-CLEAVAGE-PWY biological_process owl:Class GO:0042952 biolink:NamedThing beta-ketoadipate pathway A pathway of aromatic compound degradation by ortho-cleavage; one branch converts protocatechuate, derived from phenolic compounds, to beta-ketoadipate, and the other branch converts catechol, generated from various aromatic hydrocarbons, amino aromatics, and lignin monomers, also to beta-ketoadipate. Two additional steps accomplish the conversion of beta-ketoadipate to tricarboxylic acid cycle intermediates. tmpzr1t_l9r_go_relaxed.owl ortho-cleavage pathway biological_process owl:Class GO:0019610 biolink:NamedThing 3-hydroxyphenylacetate catabolic process The chemical reactions and pathways resulting in the breakdown of 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenylacetate breakdown|3-hydroxyphenylacetate catabolism|3-hydroxyphenylacetate degradation MetaCyc:3-HYDROXYPHENYLACETATE-DEGRADATION-PWY biological_process owl:Class GO:0050196 biolink:NamedThing [phosphorylase] phosphatase activity Catalysis of the reaction: [phosphorylase a] + 4 H2O = 2 [phosphorylase b] + 4 phosphate. tmpzr1t_l9r_go_relaxed.owl phosphorylase phosphatase activity|phosphorylase a phosphatase activity|type 1 protein phosphatase activity|glycogen phosphorylase phosphatase activity|PR-enzyme|protein phosphatase C|phosphorylase a phosphohydrolase activity EC:3.1.3.17|MetaCyc:PHOSPHORYLASE-PHOSPHATASE-RXN molecular_function owl:Class GO:0033600 biolink:NamedThing negative regulation of mammary gland epithelial cell proliferation Any process that stops, prevents or reduces the rate or extent of mammary gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of mammary gland epithelial cell proliferation|inhibition of mammary gland epithelial cell proliferation|down-regulation of mammary gland epithelial cell proliferation|downregulation of mammary gland epithelial cell proliferation biological_process owl:Class GO:0007439 biolink:NamedThing ectodermal digestive tract development The process whose specific outcome is the progression of the ectodermal digestive tract over time, from its formation to the mature structure. The ectodermal digestive tract includes those portions that are derived from ectoderm. tmpzr1t_l9r_go_relaxed.owl ectodermal gut development biological_process owl:Class GO:1990474 biolink:NamedThing synaptic vesicle, readily releasable pool A synaptic vesicle belonging to the pool of vesicles that are the first to be released as a result of chemical or electrical stimulation e.g. by an action potential, have the highest presynaptic membrane fusion probability and correspond to about 1% of the total number of synaptic vesicles at a resting terminal bouton. tmpzr1t_l9r_go_relaxed.owl readily releasable pool of synaptic vesicles|RRP pr 2014-09-02T09:02:41Z cellular_component owl:Class GO:0008021 biolink:NamedThing synaptic vesicle A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane. tmpzr1t_l9r_go_relaxed.owl docked vesicle NIF_Subcellular:sao1071221672|Wikipedia:Synaptic_vesicle This term should not be confused with GO:0097547 'synaptic vesicle protein transport vesicle'. STVs and synaptic vesicles differ both functionally and morphologically. Functionally, STVs are transport vesicles that deliver synaptic vesicle proteins to synapses, while synaptic vesicles are responsible for transmitter release at synapses. Morphologically, synaptic vesicles are very homogeneous, while STVs are very heterogeneous in size and shape. STVs might be a precursor for synaptic vesicles. cellular_component owl:Class GO:0090016 biolink:NamedThing regulation of leaflet formation Any process that modulates the frequency, rate or extent of leaflet formation. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T11:23:48Z biological_process owl:Class GO:0036086 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to iron ion starvation Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of iron ions. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter in response to iron deficiency bf 2012-01-05T01:45:26Z biological_process owl:Class GO:0072666 biolink:NamedThing establishment of protein localization to vacuole The directed movement of a protein to a specific location in a vacuole. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to vacuole mah 2011-02-14T02:56:29Z biological_process owl:Class GO:0048764 biolink:NamedThing trichoblast maturation A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018285 biolink:NamedThing iron incorporation into iron-sulfur cluster via tetrakis-L-cysteinyl diiron disulfide The incorporation of iron into a 2Fe-2S iron-sulfur cluster via tetrakis-L-cysteinyl diiron disulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tetrakis-L-cysteinyl diiron disulphide RESID:AA0137 biological_process owl:Class GO:0099500 biolink:NamedThing vesicle fusion to plasma membrane Fusion of the membrane of a vesicle with the plasma membrane, thereby releasing its contents into the extracellular space. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045681 biolink:NamedThing positive regulation of R8 cell differentiation Any process that activates or increases the frequency, rate or extent of R8 cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of R8 differentiation|up regulation of R8 differentiation|stimulation of R8 differentiation|up-regulation of R8 differentiation|activation of R8 differentiation|positive regulation of R8 differentiation biological_process owl:Class GO:0110117 biolink:NamedThing positive regulation of compound eye photoreceptor cell differentiation Any process that activates or increases the frequency, rate or extent of compound eye photoreceptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-16T18:13:28Z biological_process owl:Class GO:1903638 biolink:NamedThing positive regulation of protein insertion into mitochondrial outer membrane Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial outer membrane protein import|upregulation of mitochondrial outer membrane protein import|activation of mitochondrial outer membrane protein import|up-regulation of mitochondrial outer membrane protein import|positive regulation of protein import into mitochondrial outer membrane|up regulation of protein import into mitochondrial outer membrane|up regulation of protein insertion into mitochondrial outer membrane|up-regulation of protein transport into mitochondrial outer membrane|upregulation of protein insertion into mitochondrial outer membrane|activation of protein import into mitochondrial outer membrane|activation of protein insertion into mitochondrial outer membrane|positive regulation of protein transport into mitochondrial outer membrane|activation of protein transport into mitochondrial outer membrane|up regulation of mitochondrial outer membrane protein import|up regulation of protein transport into mitochondrial outer membrane|up-regulation of protein insertion into mitochondrial outer membrane|upregulation of protein import into mitochondrial outer membrane|upregulation of protein transport into mitochondrial outer membrane|up-regulation of protein import into mitochondrial outer membrane pga 2014-11-20T15:55:01Z biological_process owl:Class GO:1903955 biolink:NamedThing positive regulation of protein targeting to mitochondrion Any process that activates or increases the frequency, rate or extent of protein targeting to mitochondrion. tmpzr1t_l9r_go_relaxed.owl up regulation of protein-mitochondrial targeting|upregulation of mitochondrial translocation|positive regulation of mitochondrial protein import|positive regulation of protein-mitochondrial targeting|up regulation of mitochondrial protein import|up regulation of protein targeting to mitochondria|up-regulation of protein targeting to mitochondria|up-regulation of mitochondrial protein import|up-regulation of protein targeting to mitochondrion|activation of protein-mitochondrial targeting|up regulation of protein targeting to mitochondrion|activation of mitochondrial translocation|positive regulation of protein import into mitochondrion|activation of protein targeting to mitochondria|positive regulation of mitochondrial translocation|up-regulation of protein-mitochondrial targeting|upregulation of protein targeting to mitochondrion|activation of protein targeting to mitochondrion|upregulation of protein-mitochondrial targeting|up-regulation of mitochondrial translocation|upregulation of protein targeting to mitochondria|up regulation of protein import into mitochondrion|activation of mitochondrial protein import|activation of protein import into mitochondrion|positive regulation of protein targeting to mitochondria|upregulation of protein import into mitochondrion|upregulation of mitochondrial protein import|up-regulation of protein import into mitochondrion|up regulation of mitochondrial translocation An example of this is PINK1 in human (UniProt symbol Q9BXM7) in PMID:24270810 inferred from mutant phenotype. pad 2015-02-24T16:58:21Z biological_process owl:Class GO:0006294 biolink:NamedThing nucleotide-excision repair, preincision complex assembly The aggregation, arrangement and bonding together of proteins on DNA to form the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage. This assembly occurs before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage. tmpzr1t_l9r_go_relaxed.owl nucleotide-excision repair, preincision complex formation biological_process owl:Class GO:0030392 biolink:NamedThing fructosamine catabolic process The chemical reactions and pathways resulting in the breakdown of fructosamine, a fructose molecule containing an amino group in place of a hydroxyl group. tmpzr1t_l9r_go_relaxed.owl fructosamine catabolism|fructosamine degradation|fructosamine breakdown biological_process owl:Class GO:0048777 biolink:NamedThing positive regulation of leucophore differentiation Any process that activates or increases the frequency, rate or extent of leucophore differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of leucophore differentiation|activation of leucophore differentiation|stimulation of leucophore differentiation|up regulation of leucophore differentiation|upregulation of leucophore differentiation biological_process owl:Class GO:0061940 biolink:NamedThing regulation of c-di-GMP signaling Any process that modulates the rate frequency or extent of c-di-GMP signaling. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-14T19:07:41Z biological_process owl:Class GO:0002943 biolink:NamedThing tRNA dihydrouridine synthesis The process whereby a uridine in a transfer RNA is converted to dihydrouridine. tmpzr1t_l9r_go_relaxed.owl Dihydrouridine is found in numerous positions within loop I, the so-called dihydrouridine loop, of many transfer RNAs. Most often found at positions 16 and 17, but also sometimes at positions 20, 20a, and 20b. hjd 2012-11-16T16:20:37Z biological_process owl:Class GO:0051417 biolink:NamedThing microtubule nucleation by spindle pole body The 'de novo' formation of a microtubule, mediated by the spindle pole body. tmpzr1t_l9r_go_relaxed.owl microtubule nucleation by SPB|SPB-mediated microtubule nucleation|spindle pole body-mediated microtubule nucleation biological_process owl:Class GO:0051713 biolink:NamedThing negative regulation of cytolysis in other organism Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the cytolysis of cells in another organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytolysis of cells of another organism|negative regulation of cytolysis of cells of another, non-host, organism|down regulation of cytolysis of cells of another organism|down-regulation of cytolysis of cells of another organism|downregulation of cytolysis of cells of another organism|inhibition of cytolysis of cells of another organism GO:0001903 biological_process owl:Class GO:0120071 biolink:NamedThing regulation of pyloric antrum smooth muscle contraction Any process that modulates the frequency, rate or extent of any pyloric antrum smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:32:39Z biological_process owl:Class GO:1990091 biolink:NamedThing sodium-dependent self proteolysis The sodium-dependent hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds. tmpzr1t_l9r_go_relaxed.owl sl 2013-05-06T17:30:23Z biological_process owl:Class GO:0097264 biolink:NamedThing self proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds. tmpzr1t_l9r_go_relaxed.owl autolysis|self-proteolysis pr 2012-03-09T12:43:24Z biological_process owl:Class GO:0002235 biolink:NamedThing detection of unfolded protein The series of events in which an unfolded protein stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901339 biolink:NamedThing regulation of store-operated calcium channel activity Any process that modulates the frequency, rate or extent of store-operated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl pr 2012-09-03T14:23:10Z biological_process owl:Class GO:1904184 biolink:NamedThing positive regulation of pyruvate dehydrogenase activity Any process that activates or increases the frequency, rate or extent of pyruvate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of pyruvic acid dehydrogenase activity|activation of pyruvic acid dehydrogenase activity|positive regulation of pyruvic dehydrogenase activity|upregulation of pyruvic dehydrogenase activity|up-regulation of pyruvic dehydrogenase activity|up regulation of pyruvic dehydrogenase activity|up regulation of pyruvate dehydrogenase activity|positive regulation of pyruvic acid dehydrogenase activity|up-regulation of pyruvic acid dehydrogenase activity|up regulation of pyruvic acid dehydrogenase activity|activation of pyruvic dehydrogenase activity|activation of pyruvate dehydrogenase activity|up-regulation of pyruvate dehydrogenase activity|upregulation of pyruvate dehydrogenase activity dph 2015-05-05T14:17:39Z biological_process owl:Class GO:0005899 biolink:NamedThing insulin receptor complex A disulfide-bonded, heterotetrameric receptor complex. The alpha chains are entirely extracellular, while each beta chain has one transmembrane domain. The ligand binds to the alpha subunit extracellular domain and the kinase is associated with the beta subunit intracellular domain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018807 biolink:NamedThing 6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase activity Catalysis of the reaction: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA + H2O = 2,6-dihydroxycyclohexane-1-carboxyl-CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:39651|UM-BBD_reactionID:r0204|EC:3.7.1.21 molecular_function owl:Class GO:0016822 biolink:NamedThing hydrolase activity, acting on acid carbon-carbon bonds Catalysis of the hydrolysis of any acid carbon-carbon bond. tmpzr1t_l9r_go_relaxed.owl EC:3.7.-.- molecular_function owl:Class GO:0001545 biolink:NamedThing primary ovarian follicle growth Increase in size of primary follicles including oocyte growth and granulosa and/or theca cell proliferation until more than one layer of granulosa cells is present (preantral follicle). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035397 biolink:NamedThing helper T cell enhancement of adaptive immune response Positive regulation of an adaptive immune response mediated via cytokine production by helper T cell. tmpzr1t_l9r_go_relaxed.owl provision of T cell help bf 2010-03-23T10:38:31Z biological_process owl:Class GO:0098844 biolink:NamedThing postsynaptic endocytic zone membrane The region of the postsynaptic membrane that is part of the postsynaptic endocytic zone. This region of membrane is associated with stable clathrin puncta. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042791 biolink:NamedThing 5S class rRNA transcription by RNA polymerase III The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl 5S class rRNA transcription from RNA polymerase III type 1 promoter|5S rRNA transcription biological_process owl:Class GO:0009303 biolink:NamedThing rRNA transcription The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template. tmpzr1t_l9r_go_relaxed.owl rRNA synthesis|rRNA biosynthesis|rRNA biosynthetic process biological_process owl:Class GO:0070248 biolink:NamedThing negative regulation of natural killer cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of natural killer cell apoptosis|negative regulation of NK cell apoptosis|downregulation of natural killer cell apoptosis|negative regulation of natural killer cell apoptosis|down-regulation of natural killer cell apoptosis|inhibition of natural killer cell apoptosis biological_process owl:Class GO:0070247 biolink:NamedThing regulation of natural killer cell apoptotic process Any process that modulates the occurrence or rate of natural killer cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell apoptosis|regulation of natural killer cell apoptosis biological_process owl:Class GO:0000900 biolink:NamedThing translation repressor activity, mRNA regulatory element binding Antagonizes the ribosome-mediated translation of mRNA into a polypeptide via direct binding (through a selective and non-covalent interaction) to nucleic acid. tmpzr1t_l9r_go_relaxed.owl translation repressor activity, nucleic acid binding https://github.com/geneontology/go-ontology/issues/15049 molecular_function owl:Class GO:0106363 biolink:NamedThing protein-cysteine methyltransferase activity Catalysis of the reaction: L-cysteinyl-[protein] + S-adenosyl-L-methionine = H(+) + S-adenosyl-L-homocysteine + S-methyl-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl RHEA:66544 hjd 2021-02-05T15:44:58Z molecular_function owl:Class GO:1905521 biolink:NamedThing regulation of macrophage migration Any process that modulates the frequency, rate or extent of macrophage migration. tmpzr1t_l9r_go_relaxed.owl sl 2016-10-03T15:29:06Z biological_process owl:Class GO:0002685 biolink:NamedThing regulation of leukocyte migration Any process that modulates the frequency, rate, or extent of leukocyte migration. tmpzr1t_l9r_go_relaxed.owl regulation of leucocyte migration|regulation of immune cell migration biological_process owl:Class GO:1901185 biolink:NamedThing negative regulation of ERBB signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of ERBB signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of ERBB signaling pathway|down regulation of ErbB signaling|downregulation of EGF receptor family signaling pathway|inhibition of ERBB signalling pathway|down-regulation of ErbB signaling|inhibition of ErbB signaling|down-regulation of ERBB signalling pathway|down-regulation of ERBB signaling pathway|negative regulation of ErbB signaling|down regulation of ERBB signaling pathway|inhibition of ERBB signaling pathway|down regulation of EGFR family signaling pathway|inhibition of EGF receptor family signaling pathway|downregulation of EGFR family signaling pathway|inhibition of EGFR family signaling pathway|negative regulation of EGFR family signaling pathway|down regulation of EGF receptor family signaling pathway|down regulation of ERBB signalling pathway|down-regulation of EGF receptor family signaling pathway|negative regulation of EGF receptor family signaling pathway|downregulation of ERBB signalling pathway|negative regulation of ERBB signalling pathway|down-regulation of EGFR family signaling pathway|downregulation of ErbB signaling rl 2012-07-24T07:37:35Z biological_process owl:Class GO:0010701 biolink:NamedThing positive regulation of norepinephrine secretion Any process that increases the frequency, rate or extent of the regulated release of norepinephrine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014061 biolink:NamedThing regulation of norepinephrine secretion Any process that modulates the frequency, rate or extent of the regulated release of norepinephrine. tmpzr1t_l9r_go_relaxed.owl regulation of noradrenaline secretion biological_process owl:Class GO:0008478 biolink:NamedThing pyridoxal kinase activity Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxal 5-phosphate-kinase activity|pyridoxine kinase activity|pyridoxamine kinase activity|pyridoxal phosphokinase activity|pyridoxal kinase (phosphorylating)|ATP:pyridoxal 5'-phosphotransferase activity|vitamin B(6) kinase activity|vitamin B6 kinase activity RHEA:10224|Reactome:R-HSA-964970|Reactome:R-HSA-964958|EC:2.7.1.35|MetaCyc:PYRIDOXKIN-RXN|Reactome:R-HSA-964962 molecular_function owl:Class GO:0032378 biolink:NamedThing negative regulation of intracellular lipid transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids within cells. tmpzr1t_l9r_go_relaxed.owl downregulation of intracellular lipid transport|down regulation of intracellular lipid transport|inhibition of intracellular lipid transport|down-regulation of intracellular lipid transport biological_process owl:Class GO:0102275 biolink:NamedThing cysteine-S-conjugate N-malonyl transferase activity Catalysis of the reaction: malonyl-CoA(5-) + an L-cysteine-S-conjugate <=> coenzyme A + H+ + an N-malonyl-L-cysteine-S-conjugate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12534 molecular_function owl:Class GO:0010713 biolink:NamedThing negative regulation of collagen metabolic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034819 biolink:NamedThing 3-HSA hydroxylase activity Catalysis of the reaction: 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + NADPH + H+ + O2 = 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r1150 molecular_function owl:Class GO:0033584 biolink:NamedThing tyrosine biosynthetic process from chorismate via L-arogenate The chemical reactions and pathways resulting in the formation of tyrosine from other compounds, including chorismate, via the intermediate L-arogenate. tmpzr1t_l9r_go_relaxed.owl tyrosine synthesis from chorismate via L-arogenate|tyrosine formation from chorismate via L-arogenate|tyrosine anabolism from chorismate via L-arogenate MetaCyc:PWY-3461 biological_process owl:Class GO:1904421 biolink:NamedThing response to D-galactosamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a D-galactosamine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-02T15:38:20Z biological_process owl:Class GO:1901829 biolink:NamedThing zeaxanthin bis(beta-D-glucoside) catabolic process The chemical reactions and pathways resulting in the breakdown of zeaxanthin bis(beta-D-glucoside). tmpzr1t_l9r_go_relaxed.owl zeaxanthin diglucoside degradation|zeaxanthin diglucoside breakdown|zeaxanthin diglucoside catabolism|zeaxanthin bis(beta-D-glucoside) degradation|zeaxanthin bis(beta-D-glucoside) breakdown|zeaxanthin bis(beta-D-glucoside) catabolism yaf 2013-01-22T12:32:06Z biological_process owl:Class GO:1901805 biolink:NamedThing beta-glucoside catabolic process The chemical reactions and pathways resulting in the breakdown of beta-glucoside. tmpzr1t_l9r_go_relaxed.owl beta-glucoside breakdown|beta-glucoside degradation|beta-glucoside catabolism yaf 2013-01-22T10:10:26Z biological_process owl:Class GO:0046550 biolink:NamedThing (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine The modification of asparagine to (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine as found in microcin C7 produced from the mccA gene in E. coli plasmid pMccC7. tmpzr1t_l9r_go_relaxed.owl (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine anabolism from asparagine|(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine formation from asparagine|(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine synthesis from asparagine RESID:AA0328 biological_process owl:Class GO:0102822 biolink:NamedThing quercetin 3'-O-methyltransferase activity Catalysis of the reaction: quercetin-7-olate + S-adenosyl-L-methionine = H+ + isorhamnetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.42|RHEA:55332|MetaCyc:RXN-8262 molecular_function owl:Class GO:1990880 biolink:NamedThing cellular detoxification of copper ion Any process that reduces or removes the toxicity of copper ions in a cell. These include transport of copper cations away from sensitive areas and to compartments or complexes whose purpose is sequestration. tmpzr1t_l9r_go_relaxed.owl al 2015-10-21T14:34:40Z biological_process owl:Class GO:0010273 biolink:NamedThing detoxification of copper ion Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990818 biolink:NamedThing L-arginine transmembrane export from vacuole The directed movement of L-arginine out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vw 2015-08-06T15:06:33Z biological_process owl:Class GO:0007086 biolink:NamedThing vesicle fusion with nuclear membrane involved in mitotic nuclear envelope reassembly The cell cycle process that results in the joining of the lipid bilayer membrane around a vesicle with the lipid bilayer membrane around the nucleus, and contributes to mitotic nuclear envelope reassembly. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000740 biolink:NamedThing nuclear membrane fusion The joining of 2 or more lipid bilayer membranes that surround the nucleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051870 biolink:NamedThing methotrexate binding Binding to methotrexate, an antineoplastic antimetabolite with immunosuppressant properties. It is an inhibitor of tetrahydrofolate reductase and prevents the formation of tetrahydrofolate, necessary for synthesis of thymidylate, an essential component of DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045180 biolink:NamedThing basal cortex The region that lies just beneath the plasma membrane on the basal edge of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001791 biolink:NamedThing IgM binding Binding to an immunoglobulin of the IgM isotype. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019865 biolink:NamedThing immunoglobulin binding Binding to an immunoglobulin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008455 biolink:NamedThing alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:6-(alpha-D-mannosyl)-beta-D-mannosyl-glycoprotein 2-beta-N-acetyl-D-glucosaminyltransferase activity|uridine diphosphoacetylglucosamine-alpha-D-mannoside beta-1,2-acetylglucosaminyltransferase activity|acetylglucosaminyltransferase II activity|uridine diphosphoacetylglucosamine-alpha-D-mannoside beta(1,2)-acetylglucosaminyltransferase activity|UDP-GlcNAc:mannoside alpha-(1,6) acetylglucosaminyltransferase activity|UDP-GlcNAc:mannoside alpha-1,6 acetylglucosaminyltransferase activity|alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-mannoside alpha(1,6)-acetylglucosaminyltransferase activity|N-acetylglucosaminyltransferase II activity|uridine diphosphoacetylglucosamine-mannoside alpha-1,6-acetylglucosaminyltransferase activity|GnTII activity|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II activity Reactome:R-HSA-975829|EC:2.4.1.143|RHEA:12941|Reactome:R-HSA-4793955|MetaCyc:2.4.1.143-RXN|Reactome:R-HSA-9694656 molecular_function owl:Class GO:0080114 biolink:NamedThing positive regulation of glycine hydroxymethyltransferase activity Any process that activates or increases the frequency, rate or extent of glycine hydroxymethyltransferase activity, the catalysis of the reaction 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T03:27:15Z biological_process owl:Class GO:0140404 biolink:NamedThing effector-mediated modulation of host innate immune response by symbiont A process mediated by a molecule secreted by a symbiont that results in the modulation (either activation or suppression) of a host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl effector-triggered modulation of host immune response by symbiont|effector mediated modulation of host immune response by symbiont|effector-dependent modulation of host immune response by symbiont|effector triggered modulation of host immune response by symbiont|effector-mediated modulation of host immunity pg 2019-12-05T11:38:44Z biological_process owl:Class GO:0102417 biolink:NamedThing apigenin-7-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: apigenin 7-O-beta-D-glucoside + UDP-alpha-D-glucose <=> apigenin-7-O-gentiobioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13800 molecular_function owl:Class GO:1904139 biolink:NamedThing regulation of microglial cell migration Any process that modulates the frequency, rate or extent of microglial cell migration. tmpzr1t_l9r_go_relaxed.owl nc 2015-04-13T09:06:57Z biological_process owl:Class GO:0140613 biolink:NamedThing P-type manganese transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mn2+(in) = ADP + H+ + Mn2+(out) + phosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20918 RHEA:66820 pg 2021-03-03T22:11:36Z molecular_function owl:Class GO:0047395 biolink:NamedThing glycerophosphoinositol glycerophosphodiesterase activity Catalysis of the reaction: 1-(sn-glycero-3-phospho)-1D-myo-inositol + H(2)O = sn-glycerol 3-phosphate + myo-inositol + H(+). tmpzr1t_l9r_go_relaxed.owl sn-glycero(3)phosphoinositol glycerophosphohydrolase activity|1-(sn-glycero-3-phospho)-1D-myo-inositol glycerophosphohydrolase activity|sn-glycero-3-phospho-1-inositol glycerophosphohydrolase activity Reactome:R-HSA-6813740|EC:3.1.4.44|MetaCyc:3.1.4.44-RXN|RHEA:16501|KEGG_REACTION:R01193 molecular_function owl:Class GO:1902072 biolink:NamedThing negative regulation of hypoxia-inducible factor-1alpha signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of hypoxia-inducible factor-1alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of HIF1alpha pathway|downregulation of hypoxia-inducible factor-1alpha signalling pathway|negative regulation of hypoxia-inducible factor-1alpha signalling pathway|down-regulation of HIF1alpha pathway|down regulation of hypoxia-inducible factor-1alpha signalling pathway|down regulation of hypoxia-inducible factor-1alpha signaling pathway|inhibition of HIF1alpha pathway|down-regulation of hypoxia-inducible factor-1alpha signalling pathway|inhibition of hypoxia-inducible factor-1alpha signaling pathway|negative regulation of HIF1alpha pathway|downregulation of hypoxia-inducible factor-1alpha signaling pathway|downregulation of HIF1alpha pathway|down-regulation of hypoxia-inducible factor-1alpha signaling pathway|inhibition of hypoxia-inducible factor-1alpha signalling pathway bf 2013-04-18T13:28:25Z biological_process owl:Class GO:0044624 biolink:NamedThing envenomation resulting in modulation of cell migration in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the modulation of cell migration in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of cell migration in other organism jl 2012-07-04T05:03:56Z biological_process owl:Class GO:0046201 biolink:NamedThing cyanate biosynthetic process The chemical reactions and pathways resulting in the formation of cyanate, NCO-, the anion of cyanic acid. tmpzr1t_l9r_go_relaxed.owl cyanate synthesis|cyanate formation|cyanate biosynthesis|cyanate anabolism biological_process owl:Class GO:0019002 biolink:NamedThing GMP binding Binding to GMP, guanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043743 biolink:NamedThing LPPG:FO 2-phospho-L-lactate transferase activity Catalysis of the reaction: 7,8-didemethyl-8-hydroxy-5-deazariboflavin + lactyl-2-diphospho-5'-guanosine = coenzyme F420-0 + GMP. tmpzr1t_l9r_go_relaxed.owl RHEA:27510|EC:2.7.8.28 molecular_function owl:Class GO:1902941 biolink:NamedThing regulation of voltage-gated chloride channel activity Any process that modulates the frequency, rate or extent of voltage-gated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of voltage gated chloride channel activity|regulation of voltage-dependent chloride channel activity als 2014-04-28T08:55:31Z biological_process owl:Class GO:0051524 biolink:NamedThing cell growth mode switching, bipolar to monopolar The process in which a cell switches from bipolar cell growth to monopolar cell growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060824 biolink:NamedThing retinoic acid receptor signaling pathway involved in neural plate anterior/posterior pattern formation The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the formation of the anterior/posterior pattern of the neural plate. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:30:57Z biological_process owl:Class GO:0099072 biolink:NamedThing regulation of postsynaptic membrane neurotransmitter receptor levels Any process that regulates the the local concentration of neurotransmitter receptor at the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102619 biolink:NamedThing oryzalexin C synthase (oryzalexin A dependent) activity Catalysis of the reaction: oryzalexin A + NAD(P) <=> oryzalexin C + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15467 molecular_function owl:Class GO:1905786 biolink:NamedThing positive regulation of anaphase-promoting complex-dependent catabolic process Any process that activates or increases the frequency, rate or extent of anaphase-promoting complex-dependent catabolic process. tmpzr1t_l9r_go_relaxed.owl vw 2017-01-09T10:16:33Z biological_process owl:Class GO:0048597 biolink:NamedThing post-embryonic camera-type eye morphogenesis The process in which the anatomical structures of the eye are generated and organized during post-embryonic development. tmpzr1t_l9r_go_relaxed.owl post-embryonic camera-style eye morphogenesis|post-embryonic eye morphogenesis biological_process owl:Class GO:0048050 biolink:NamedThing post-embryonic eye morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the eye are generated and organized. The eye is the organ of sight. tmpzr1t_l9r_go_relaxed.owl GO:0048051 biological_process owl:Class GO:0034561 biolink:NamedThing 1,2-bis(4-hydroxyphenyl)-2-proponol dehydratase activity Catalysis of the reaction: 1,2-bis(4-hydroxyphenyl)-2-propanol = 4,4'-dihydroxy-alpha-methylstilbene + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0862 molecular_function owl:Class GO:0140466 biolink:NamedThing iron-sulfur cluster export from the mitochondrion The directed movement of iron sulfur clusters from inside the mitochondrion into the cytosol by crossing the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19504 pg 2020-05-22T10:01:36Z biological_process owl:Class GO:0044127 biolink:NamedThing regulation of development of symbiont in host Any process in which the symbiont regulates its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term partially replaces the obsolete term 'regulation of growth or development of symbiont in host ; GO:0033665'. See also 'regulation of growth of symbiont in host ; GO:0044126'. jl 2009-08-04T02:11:08Z biological_process owl:Class GO:0006230 biolink:NamedThing TMP biosynthetic process The chemical reactions and pathways resulting in the formation of TMP, ribosylthymine monophosphate. tmpzr1t_l9r_go_relaxed.owl TMP formation|TMP anabolism|TMP synthesis|TMP biosynthesis biological_process owl:Class GO:0009174 biolink:NamedThing pyrimidine ribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside monophosphate biosynthesis|pyrimidine ribonucleoside monophosphate anabolism|pyrimidine ribonucleoside monophosphate formation|pyrimidine ribonucleoside monophosphate synthesis biological_process owl:Class GO:1990272 biolink:NamedThing anti-Mullerian hormone receptor activity Combining with anti-Mullerian hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl An example of this is Amdh2 in M. musculus, UniprotKB:Q8K592-1 in PMID:23624077. hjd 2014-01-14T21:41:35Z molecular_function owl:Class GO:0140679 biolink:NamedThing ABC-type sodium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na(in) -> ADP + phosphate + Na(out). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21796 TC:3.A.1.115.1|RHEA:14633|EC:7.2.2.4 pg 2021-07-08T11:22:56Z molecular_function owl:Class GO:0019976 biolink:NamedThing interleukin-2 binding Binding to interleukin-2. tmpzr1t_l9r_go_relaxed.owl IL-2 binding molecular_function owl:Class GO:0047913 biolink:NamedThing gallate 1-beta-glucosyltransferase activity Catalysis of the reaction: gallate + UDP-D-glucose = 1-O-galloyl-beta-D-glucose + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:gallate glucosyltransferase activity|UDPglucose:vanillate 1-O-glucosyltransferase activity|UDPglucose-vanillate 1-glucosyltransferase activity|gallate 1-b-glucosyltransferase activity|UDP-glucose-vanillate 1-glucosyltransferase activity|UDP-glucose:gallate beta-D-glucosyltransferase activity|UDPglucose:gallate beta-D-glucosyltransferase activity RHEA:15249|EC:2.4.1.136|MetaCyc:GALLATE-1-BETA-GLUCOSYLTRANSFERASE-RXN|KEGG_REACTION:R03297 molecular_function owl:Class GO:0009834 biolink:NamedThing plant-type secondary cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl secondary cell wall formation|secondary cell wall synthesis|secondary cell wall anabolism|secondary cell wall biogenesis|cellulose and pectin-containing secondary cell wall biogenesis|secondary cell wall biosynthetic process biological_process owl:Class GO:1905395 biolink:NamedThing response to flavonoid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a flavonoid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-08-24T15:00:54Z biological_process owl:Class GO:0006761 biolink:NamedThing dihydrofolate biosynthetic process The chemical reactions and pathways resulting in the formation of dihydrofolate, the dihydroxylated derivative of folate. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydrofolate biosynthetic process|dihydrofolate anabolism|dihydrofolate synthesis|dihydrofolate biosynthesis|dihydrofolate formation|7,8-dihydrofolate biosynthesis biological_process owl:Class GO:0009396 biolink:NamedThing folic acid-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of folic acid and its derivatives. tmpzr1t_l9r_go_relaxed.owl folic acid and derivative biosynthesis|vitamin B9 and derivative biosynthetic process|folic acid-containing compound biosynthesis|folate-containing compound biosynthetic process|vitamin M and derivative biosynthesis|folate-containing compound biosynthesis|vitamin B9 and derivative biosynthesis|folic acid-containing compound anabolism|folic acid and derivative biosynthetic process|vitamin M and derivative biosynthetic process|folate and derivative biosynthesis|folate and derivative biosynthetic process|folic acid-containing compound formation|folic acid-containing compound synthesis biological_process owl:Class GO:2000925 biolink:NamedThing negative regulation of cellodextrin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellodextrin metabolism tt 2011-08-01T12:39:56Z biological_process owl:Class GO:0060044 biolink:NamedThing negative regulation of cardiac muscle cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of heart muscle cell proliferation biological_process owl:Class GO:0055022 biolink:NamedThing negative regulation of cardiac muscle tissue growth Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle growth. tmpzr1t_l9r_go_relaxed.owl down regulation of cardiac muscle growth|negative regulation of heart muscle growth|down-regulation of cardiac muscle growth|downregulation of cardiac muscle growth|inhibition of cardiac muscle growth biological_process owl:Class GO:0007197 biolink:NamedThing adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled acetylcholine receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway|muscarinic acetylcholine receptor, adenylate cyclase inhibiting pathway|muscarinic acetylcholine receptor, adenylyl cyclase inhibiting pathway|inhibition of adenylate cyclase activity by G-protein coupled acetylcholine receptor signaling pathway|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signalling pathway biological_process owl:Class GO:0102586 biolink:NamedThing cyanidin 3-O-[2''-O-(2''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-[6''-O-(malonyl) glucoside] sinapoyltransferase activity Catalysis of the reaction: cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucoside + 1-O-sinapoyl-beta-D-glucose <=> cyanidin 3-O-[2''-O-(2''-O-(sinapoyl) xylosyl) 6'-O-(p-coumaroyl) glucoside] 5-O-[6''-O-(malonyl) glucoside + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15332 molecular_function owl:Class GO:0102718 biolink:NamedThing TRIBOA-glucoside methyltransferase activity Catalysis of the reaction: TRIBOA-beta-D-glucoside + S-adenosyl-L-methionine <=> (2R)-DIMBOA glucoside + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:32099|EC:2.1.1.241|MetaCyc:RXN-6687 molecular_function owl:Class GO:1900821 biolink:NamedThing orlandin biosynthetic process The chemical reactions and pathways resulting in the formation of orlandin. tmpzr1t_l9r_go_relaxed.owl orlandin anabolism|orlandin synthesis|orlandin formation|orlandin biosynthesis di 2012-06-04T10:15:24Z biological_process owl:Class GO:1902925 biolink:NamedThing poly(hydroxyalkanoate) biosynthetic process from fatty acid The chemical reactions and pathways resulting in the formation of poly(hydroxyalkanoate) from fatty acid. tmpzr1t_l9r_go_relaxed.owl poly(hydroxyalkanoate) anabolism from fatty acid|poly(hydroxyalkanoate) biosynthesis from fatty acid|poly(hydroxyalkanoate) formation from fatty acid|poly(hydroxyalkanoate) synthesis from fatty acid tt 2014-04-21T22:53:59Z biological_process owl:Class GO:1905610 biolink:NamedThing regulation of mRNA cap binding Any process that modulates the frequency, rate or extent of mRNA cap binding. tmpzr1t_l9r_go_relaxed.owl bc 2016-10-28T11:27:28Z biological_process owl:Class GO:0060304 biolink:NamedThing regulation of phosphatidylinositol dephosphorylation Any process that modulates the frequency, rate or extent of the chemical reaction involving the removal of one or more phosphate groups from a phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl regulation of phosphoinositide dephosphorylation biological_process owl:Class GO:0090411 biolink:NamedThing brassinosteroid binding Binding to a brassinosteroid. tmpzr1t_l9r_go_relaxed.owl tb 2011-08-11T02:25:30Z molecular_function owl:Class GO:0044322 biolink:NamedThing endoplasmic reticulum quality control compartment A subcompartment of the endoplasmic reticulum in which proteins with improper or incorrect folding accumulate. Enzymes in this compartment direct proteins with major folding problems to translocation to the cytosol and degradation, and proteins with minor folding problems to the ER, to interact with chaperon proteins. tmpzr1t_l9r_go_relaxed.owl ER quality control compartment|ER-derived quality control compartment|ERQC jl 2010-08-03T01:12:59Z cellular_component owl:Class GO:0036215 biolink:NamedThing response to stem cell factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stem cell factor (SCF) stimulus. tmpzr1t_l9r_go_relaxed.owl response to SCF|response to stem cell factor stimulus|response to KIT ligand|response to hematopoietic growth factor KL bf 2012-04-27T10:26:37Z biological_process owl:Class GO:0010867 biolink:NamedThing positive regulation of triglyceride biosynthetic process Any process that increases the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl positive regulation of triacylglycerol biosynthetic process biological_process owl:Class GO:1905340 biolink:NamedThing regulation of protein localization to kinetochore Any process that modulates the frequency, rate or extent of protein localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to kinetochore|regulation of condensin localization to kinetochore Q9H211 in Human in PMID:22581055 es 2016-07-27T15:26:36Z biological_process owl:Class GO:0007091 biolink:NamedThing metaphase/anaphase transition of mitotic cell cycle The cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the activation of the anaphase promoting complex by Cdc20/Sleepy homolog which results in the degradation of Securin. tmpzr1t_l9r_go_relaxed.owl mitotic metaphase/anaphase transition|metaphase/anaphase transition by anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process owl:Class GO:0044772 biolink:NamedThing mitotic cell cycle phase transition The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase. tmpzr1t_l9r_go_relaxed.owl jl 2013-02-28T13:09:33Z biological_process owl:Class GO:0006890 biolink:NamedThing retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. tmpzr1t_l9r_go_relaxed.owl retrograde transport, Golgi to endoplasmic reticulum|retrograde transport, Golgi to ER|retrograde (Golgi to ER) transport|cis-Golgi to rough ER transport|retrograde vesicle-mediated transport, Golgi to ER|cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport|cis-Golgi to rough ER vesicle-mediated transport|cis-Golgi to rough endoplasmic reticulum transport GO:0048220 biological_process owl:Class GO:1904966 biolink:NamedThing positive regulation of vitamin E biosynthetic process Any process that activates or increases the frequency, rate or extent of vitamin E biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of vitamin E formation|up-regulation of alpha-tocopherol biosynthesis|up-regulation of vitamin E biosynthetic process|up regulation of tocopherol biosynthesis|up-regulation of tocopherol biosynthesis|up regulation of vitamin E synthesis|activation of tocopherol biosynthetic process|up-regulation of vitamin E anabolism|activation of vitamin E formation|up regulation of tocopherol biosynthetic process|positive regulation of alpha-tocopherol biosynthesis|upregulation of vitamin E synthesis|activation of vitamin E synthesis|up-regulation of alpha-tocopherol biosynthetic process|positive regulation of vitamin E biosynthesis|upregulation of vitamin E biosynthetic process|upregulation of vitamin E biosynthesis|up regulation of alpha-tocopherol biosynthesis|upregulation of vitamin E formation|positive regulation of alpha-tocopherol biosynthetic process|up regulation of vitamin E anabolism|upregulation of tocopherol biosynthesis|up-regulation of tocopherol biosynthetic process|positive regulation of vitamin E anabolism|positive regulation of tocopherol biosynthesis|up-regulation of vitamin E synthesis|activation of vitamin E biosynthetic process|up regulation of vitamin E biosynthesis|positive regulation of tocopherol biosynthetic process|upregulation of alpha-tocopherol biosynthetic process|activation of tocopherol biosynthesis|activation of alpha-tocopherol biosynthetic process|up-regulation of vitamin E formation|activation of vitamin E biosynthesis|up regulation of alpha-tocopherol biosynthetic process|upregulation of tocopherol biosynthetic process|upregulation of alpha-tocopherol biosynthesis|activation of alpha-tocopherol biosynthesis|upregulation of vitamin E anabolism|up-regulation of vitamin E biosynthesis|up regulation of vitamin E biosynthetic process|up regulation of vitamin E formation|activation of vitamin E anabolism|positive regulation of vitamin E synthesis tb 2016-02-12T17:57:03Z biological_process owl:Class GO:0019122 biolink:NamedThing peptidyl-D-alanine racemization The formation of peptidyl-D-alanine, by either racemization or from peptidyl-L-serine. tmpzr1t_l9r_go_relaxed.owl alanine racemization RESID:AA0191 See also the biological process terms 'peptidyl-D-alanine racemization, direct ; GO:0019916' and 'peptidyl-D-alanine racemization via peptidyl-L-serine ; GO:0019917'. biological_process owl:Class GO:0030710 biolink:NamedThing regulation of border follicle cell delamination Any process that regulates the frequency, rate or extent of border cell delamination. tmpzr1t_l9r_go_relaxed.owl regulation of border cell delamination biological_process owl:Class GO:0032034 biolink:NamedThing myosin II head/neck binding Binding to the head/neck region of a myosin II heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008336 biolink:NamedThing gamma-butyrobetaine dioxygenase activity Catalysis of the reaction: 2-oxoglutarate + 4-(trimethylammonio)butanoate + O(2) = carnitine + CO(2) + succinate. tmpzr1t_l9r_go_relaxed.owl gamma-butyrobetaine hydroxylase activity|alpha-butyrobetaine hydroxylase activity|gamma-BBH activity|gamma-butyrobetaine,2-oxoglutarate dioxygenase activity|g-butyrobetaine dioxygenase activity|4-trimethylammoniobutanoate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)|butyrobetaine hydroxylase activity Reactome:R-HSA-71261|RHEA:24028|EC:1.14.11.1|MetaCyc:1.14.11.1-RXN|KEGG_REACTION:R02397 molecular_function owl:Class GO:0097638 biolink:NamedThing L-arginine import across plasma membrane The directed movement of L-arginine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl arginine import|L-arginine import into cell tb 2012-09-24T14:28:58Z GO:0090467|GO:1902765 biological_process owl:Class GO:1901415 biolink:NamedThing positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA Any process that activates or increases the frequency, rate or extent of tetrapyrrole biosynthetic process from glycine and succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl up-regulation of tetrapyrrole formation from glycine and succinyl-CoA|upregulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|activation of tetrapyrrole synthesis from glycine and succinyl-CoA|up-regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|up regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|up-regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|activation of tetrapyrrole formation from glycine and succinyl-CoA|activation of tetrapyrrole anabolism from glycine and succinyl-CoA|upregulation of tetrapyrrole anabolism from glycine and succinyl-CoA|activation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|up regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|upregulation of tetrapyrrole synthesis from glycine and succinyl-CoA|up-regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|up regulation of tetrapyrrole formation from glycine and succinyl-CoA|positive regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|up regulation of tetrapyrrole synthesis from glycine and succinyl-CoA|activation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|upregulation of tetrapyrrole formation from glycine and succinyl-CoA|up-regulation of tetrapyrrole synthesis from glycine and succinyl-CoA|up regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA|positive regulation of tetrapyrrole formation from glycine and succinyl-CoA|positive regulation of tetrapyrrole anabolism from glycine and succinyl-CoA|upregulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA|positive regulation of tetrapyrrole synthesis from glycine and succinyl-CoA tt 2012-10-01T16:29:12Z biological_process owl:Class GO:0060090 biolink:NamedThing molecular adaptor activity The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl binding, bridging|protein complex scaffold activity|protein-containing complex scaffold activity GO:0032947 molecular_function owl:Class GO:0018281 biolink:NamedThing GSI anchor biosynthetic process via N-seryl-glycosylsphingolipidinositolethanolamine The formation of a C-terminal peptidyl-serine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a seryl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GSI anchor anabolism via N-seryl-glycosylsphingolipidinositolethanolamine|GSI anchor formation via N-seryl-glycosylsphingolipidinositolethanolamine|GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine RESID:AA0166 biological_process owl:Class GO:0019939 biolink:NamedThing peptidyl-S-palmitoleyl-L-cysteine biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form peptidyl-S-palmitoleyl-L-cysteine specifically. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-palmitoleyl-L-cysteine synthesis from peptidyl-cysteine|peptidyl-S-palmitoleyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-palmitoleyl-L-cysteine anabolism from peptidyl-cysteine RESID:AA0308 biological_process owl:Class GO:0045234 biolink:NamedThing protein palmitoleylation The covalent attachment of a palmitoleyl group to a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid palmitoleylation GO:0045235 biological_process owl:Class GO:0018826 biolink:NamedThing methionine gamma-lyase activity Catalysis of the reaction: L-methionine = methanethiol + NH3 + 2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl methionine dethiomethylase activity|L-methionine methanethiol-lyase (deaminating)|methioninase activity|L-methioninase activity|methionine lyase activity|L-methionine methanethiol-lyase (deaminating; 2-oxobutanoate-forming)|L-methionine gamma-lyase activity RHEA:23800|UM-BBD_reactionID:r0432|MetaCyc:METHIONINE-GAMMA-LYASE-RXN|EC:4.4.1.11 molecular_function owl:Class GO:0090030 biolink:NamedThing regulation of steroid hormone biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:38:27Z biological_process owl:Class GO:0032289 biolink:NamedThing central nervous system myelin formation The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by an oligodendrocyte in the central nervous system. tmpzr1t_l9r_go_relaxed.owl myelin formation in central nervous system biological_process owl:Class GO:0032288 biolink:NamedThing myelin assembly The process in which the wraps of cell membrane that constitute myelin are laid down around an axon in the central or peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl myelin formation biological_process owl:Class GO:0045687 biolink:NamedThing positive regulation of glial cell differentiation Any process that activates or increases the frequency, rate or extent of glia cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of glial cell differentiation|up-regulation of glial cell differentiation|up regulation of glial cell differentiation|positive regulation of neuroglia differentiation|stimulation of glial cell differentiation|positive regulation of glia cell differentiation|activation of glial cell differentiation biological_process owl:Class GO:0070622 biolink:NamedThing UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase complex A protein complex that possesses UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity; the bovine complex contains disulfide-linked homodimers of 166- and 51-kDa subunits and two identical, noncovalently associated 56-kDa subunits. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine:lysosomal-enzyme N-acetylglucosamine-1-phosphotransferase complex|N-acetylglucosamine-1-phosphotransferase complex mah 2009-04-29T04:50:35Z cellular_component owl:Class GO:1901818 biolink:NamedThing beta-zeacarotene biosynthetic process The chemical reactions and pathways resulting in the formation of beta-zeacarotene. tmpzr1t_l9r_go_relaxed.owl beta-zeacarotene biosynthesis|beta-zeacarotene synthesis|beta-zeacarotene formation|beta-zeacarotene anabolism yaf 2013-01-22T10:42:12Z biological_process owl:Class GO:0042281 biolink:NamedThing dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity Catalysis of the addition of the first glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Man(9)GlcNAc(2)-PP-Dol. tmpzr1t_l9r_go_relaxed.owl dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase activity EC:2.4.1.267|MetaCyc:RXN-5470|RHEA:30635 molecular_function owl:Class GO:0043741 biolink:NamedThing alpha-aminoadipate acetyltransferase activity Catalysis of the reaction: alpha-aminoadipate + acetyl-CoA = N2-acetyl-alpha-aminoadipate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl L-2-aminoadipate N-acetyltransferase activity https://github.com/geneontology/go-ontology/issues/18958 MetaCyc:RXN-5181 GO:0043869 molecular_function owl:Class GO:0030409 biolink:NamedThing glutamate formimidoyltransferase activity Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate. tmpzr1t_l9r_go_relaxed.owl formimidoyltransferase activity|glutamate formiminotransferase activity|formiminotransferase activity|formiminoglutamic formiminotransferase activity|5-formimidoyltetrahydrofolate:L-glutamate N-formimidoyltransferase activity|formiminoglutamic acid transferase activity|glutamate formyltransferase activity https://github.com/geneontology/go-ontology/issues/20486 RHEA:15097|EC:2.1.2.5|MetaCyc:GLUTAMATE-FORMIMINOTRANSFERASE-RXN GO:0030407 molecular_function owl:Class GO:0070430 biolink:NamedThing positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of NOD1 signaling pathway|positive regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway biological_process owl:Class GO:0070428 biolink:NamedThing regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway Any process that modulates the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway. tmpzr1t_l9r_go_relaxed.owl regulation of NOD1 signaling pathway|regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway biological_process owl:Class GO:1901447 biolink:NamedThing positive regulation of response to propan-1-ol Any process that activates or increases the frequency, rate or extent of response to propan-1-ol. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to propan-1-ol|up regulation of response to propan-1-ol|activation of response to propan-1-ol|upregulation of response to propan-1-ol tt 2012-10-02T14:14:10Z biological_process owl:Class GO:1904458 biolink:NamedThing regulation of substance P secretion Any process that modulates the frequency, rate or extent of substance P secretion. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T19:32:50Z biological_process owl:Class GO:1903602 biolink:NamedThing thermospermine catabolic process The chemical reactions and pathways resulting in the breakdown of thermospermine. tmpzr1t_l9r_go_relaxed.owl thermospermine degradation|thermospermine catabolism|thermospermine breakdown tb 2014-11-12T18:48:04Z biological_process owl:Class GO:1903601 biolink:NamedThing thermospermine metabolic process The chemical reactions and pathways involving thermospermine. tmpzr1t_l9r_go_relaxed.owl thermospermine metabolism tb 2014-11-12T18:47:55Z biological_process owl:Class GO:0070674 biolink:NamedThing hypoxanthine dehydrogenase activity Catalysis of the reaction: hypoxanthine + NAD+ + H2O = xanthine + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD-hypoxanthine dehydrogenase activity|hypoxanthine/NAD+ oxidoreductase activity|hypoxanthine/NAD(+) oxidoreductase activity|hypoxanthine:NAD+ oxidoreductase activity|hypoxanthine oxidoreductase activity|hypoxanthine-NAD oxidoreductase activity mah 2009-05-29T01:02:13Z molecular_function owl:Class GO:0071097 biolink:NamedThing alphaV-beta3 integrin-paxillin-Pyk2 complex A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the FAK-related kinase Pyk2. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-PXN-PTK2b complex mah 2009-11-06T04:51:52Z cellular_component owl:Class GO:1904968 biolink:NamedThing positive regulation of monopolar spindle attachment to meiosis I kinetochore Any process that activates or increases the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation. tmpzr1t_l9r_go_relaxed.owl positive regulation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|upregulation of sister kinetochore mono-orientation|up regulation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|up regulation of monopolar attachment|positive regulation of attachment of spindle microtubules to kinetochore during meiosis I|activation of monopolar attachment|upregulation of attachment of spindle microtubules to kinetochore involved in meiosis I|positive regulation of sister kinetochore mono-orientation|up-regulation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|activation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|up-regulation of attachment of spindle microtubules to kinetochore involved in meiosis I|upregulation of attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|upregulation of attachment of spindle microtubules to kinetochore during meiosis I|up regulation of attachment of spindle microtubules to kinetochore during meiosis I|up-regulation of monopolar attachment|up regulation of attachment of spindle microtubules to kinetochore involved in meiosis I|activation of sister kinetochore mono-orientation|activation of attachment of spindle microtubules to kinetochore during meiosis I|activation of attachment of spindle microtubules to kinetochore involved in meiosis I|up-regulation of sister kinetochore mono-orientation|positive regulation of monopolar attachment|up-regulation of attachment of spindle microtubules to kinetochore during meiosis I|upregulation of monopolar attachment|up regulation of sister kinetochore mono-orientation|positive regulation of attachment of spindle microtubules to kinetochore involved in meiosis I mah 2016-02-15T15:19:20Z biological_process owl:Class GO:0046108 biolink:NamedThing uridine metabolic process The chemical reactions and pathways involving uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids. tmpzr1t_l9r_go_relaxed.owl uridine metabolism biological_process owl:Class GO:0061289 biolink:NamedThing Wnt signaling pathway involved in kidney development The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the kidney over time. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in kidney development|Wnt-activated signaling pathway involved in kidney development|Wnt receptor signaling pathway involved in kidney development dph 2010-09-03T12:04:50Z biological_process owl:Class GO:0010427 biolink:NamedThing abscisic acid binding Binding to abscisic acid, a plant hormone that regulates aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl ABA binding|abscisate binding molecular_function owl:Class GO:0048757 biolink:NamedThing pigment granule maturation Steps required to form a membrane-bounded organelle into a pigment granule containing pigment. Maturation is a developmental process, independent of morphogenetic (shape) change, that is required for a cell or structure to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021700 biolink:NamedThing developmental maturation A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure, cell or cellular component to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905273 biolink:NamedThing positive regulation of proton-transporting ATP synthase activity, rotational mechanism Any process that activates or increases the frequency, rate or extent of proton-transporting ATP synthase activity, rotational mechanism. tmpzr1t_l9r_go_relaxed.owl positive regulation of H+-transporting ATP synthase activity|upregulation of proton-transporting ATP synthase activity, rotational mechanism|up regulation of hydrogen ion transporting two-sector ATPase activity|up-regulation of hydrogen ion transporting two-sector ATPase activity|up-regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|up regulation of hydrogen ion translocating F-type ATPase activity|activation of hydrogen ion transporting ATP synthase activity, rotational mechanism|up-regulation of H+-transporting ATP synthase activity|up regulation of proton-transporting ATP synthase activity, rotational mechanism|up-regulation of hydrogen ion translocating F-type ATPase activity|upregulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|positive regulation of hydrogen ion transporting two-sector ATPase activity|up-regulation of proton-transporting ATP synthase activity, rotational mechanism|activation of H+-transporting ATP synthase activity|positive regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|activation of hydrogen ion translocating F-type ATPase activity|up regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|upregulation of H+-transporting ATP synthase activity|upregulation of hydrogen ion transporting two-sector ATPase activity|up regulation of H+-transporting ATP synthase activity|activation of hydrogen ion transporting two-sector ATPase activity|upregulation of hydrogen ion translocating F-type ATPase activity|activation of proton-transporting ATP synthase activity, rotational mechanism|positive regulation of hydrogen ion translocating F-type ATPase activity als 2016-06-16T12:10:05Z biological_process owl:Class GO:0002495 biolink:NamedThing antigen processing and presentation of peptide antigen via MHC class II The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein. tmpzr1t_l9r_go_relaxed.owl peptide antigen processing and presentation via MHC class II biological_process owl:Class GO:0048002 biolink:NamedThing antigen processing and presentation of peptide antigen The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein. tmpzr1t_l9r_go_relaxed.owl antigen presentation, peptide antigen|peptide antigen processing and presentation biological_process owl:Class GO:0039711 biolink:NamedThing cytoplasmic helical capsid assembly The assembly of a helical viral capsid in the cytoplasm. Occurs by assembling around the viral genome. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-28T15:23:39Z biological_process owl:Class GO:0039709 biolink:NamedThing cytoplasmic capsid assembly The assembly of a virus capsid that occurs in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl VZ:1950 bf 2013-11-28T15:12:30Z biological_process owl:Class GO:0015217 biolink:NamedThing ADP transmembrane transporter activity Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061767 biolink:NamedThing negative regulation of lung blood pressure The process that decreases the force with which blood travels through the lungs. tmpzr1t_l9r_go_relaxed.owl negative regulation of pulmonary blood pressure dph 2016-04-27T11:58:55Z biological_process owl:Class GO:0014916 biolink:NamedThing regulation of lung blood pressure The process that modulates the force with which blood travels through the lungs. The process is controlled by a balance of processes that increase pressure and decrease pressure. tmpzr1t_l9r_go_relaxed.owl regulation of pulmonary blood pressure biological_process owl:Class GO:0090223 biolink:NamedThing chromatin-templated microtubule nucleation The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates from chromatin. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-13T10:53:35Z biological_process owl:Class GO:0047214 biolink:NamedThing cyanidin-3-rhamnosylglucoside 5-O-glucosyltransferase activity Catalysis of the reaction: cyanidin-3-O-D-rhamnosyl-(1,6)-D-glucoside + UDP-D-glucose = cyanidin-3-O-[D-rhamnosyl-(1,6)-D-glucoside]-5-O-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl cyanidin-3-O-rutinoside 5-O-glucosyltransferase activity|UDP-glucose:cyanidin-3-O-beta-L-rhamnosyl-(1->6)-beta-D-glucoside 5-O-beta-D-glucosyltransferase activity|UDP-glucose:cyanidin-3-O-D-rhamnosyl-1,6-D-glucoside 5-O-D-glucosyltransferase activity|uridine diphosphoglucose-cyanidin 3-rhamnosylglucoside 5-O-glucosyltransferase activity MetaCyc:2.4.1.116-RXN|EC:2.4.1.116|RHEA:12144 molecular_function owl:Class GO:1904974 biolink:NamedThing heparanase complex A protein complex which is capable of heparanase activity. tmpzr1t_l9r_go_relaxed.owl HEPS complex An example of this is HPSE in human (Q9Y251) in PMID:12927802 (inferred from direct assay). bhm 2016-02-18T11:50:39Z cellular_component owl:Class GO:0046657 biolink:NamedThing folic acid catabolic process The chemical reactions and pathways resulting in the breakdown of folic acid, pteroylglutamic acid. tmpzr1t_l9r_go_relaxed.owl folate catabolism|folic acid catabolism|folate catabolic process|vitamin M catabolic process|folic acid degradation|vitamin M catabolism|folic acid breakdown|vitamin B9 catabolic process|vitamin B9 catabolism biological_process owl:Class GO:2000624 biolink:NamedThing positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Any process that activates or increases the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. tmpzr1t_l9r_go_relaxed.owl positive regulation of nonsense-mediated mRNA decay|positive regulation of mRNA degradation, nonsense-mediated decay|positive regulation of mRNA catabolism, nonsense-mediated|positive regulation of nuclear mRNA catabolic process, nonsense-mediated decay|positive regulation of mRNA catabolic process, nonsense-mediated|positive regulation of mRNA breakdown, nonsense-mediated decay pr 2011-04-18T03:32:49Z biological_process owl:Class GO:1904321 biolink:NamedThing response to forskolin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a forskolin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T19:01:27Z biological_process owl:Class GO:0050290 biolink:NamedThing sphingomyelin phosphodiesterase D activity Catalysis of the reaction: H(2)O + sphingomyelin = ceramide 1-phosphate + choline + H(+). tmpzr1t_l9r_go_relaxed.owl sphingomyelinase D|sphingomyelin ceramide-phosphohydrolase activity MetaCyc:SPHINGOMYELIN-PHOSPHODIESTERASE-D-RXN|KEGG_REACTION:R02542|RHEA:20984|EC:3.1.4.41 molecular_function owl:Class GO:0004620 biolink:NamedThing phospholipase activity Catalysis of the hydrolysis of a glycerophospholipid. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.-|Reactome:R-HSA-6792445|Reactome:R-HSA-6786650 molecular_function owl:Class GO:0060925 biolink:NamedThing ventricular cardiac muscle cell fate commitment The commitment of cells to ventricular cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the ventricle. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. tmpzr1t_l9r_go_relaxed.owl ventricular cardiomyocyte cell fate commitment|ventricular heart muscle cell fate commitment dph 2009-09-29T11:49:39Z biological_process owl:Class GO:0071340 biolink:NamedThing skeletal muscle acetylcholine-gated channel clustering The accumulation of acetylcholine-gated cation channels in a narrow, central region of muscle fibers, in apposition to nerve terminals. tmpzr1t_l9r_go_relaxed.owl skeletal muscle AChR clustering|skeletal muscle nicotinic acetylcholine receptor clustering mah 2009-12-11T11:13:55Z biological_process owl:Class GO:0007486 biolink:NamedThing imaginal disc-derived female genitalia development The process whose specific outcome is the progression of the female genitalia over time, from formation as part of the genital disc to the mature structure. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl female genital development biological_process owl:Class GO:0106056 biolink:NamedThing regulation of calcineurin-mediated signaling Any process that modulates the frequency, rate or extent of calcineurin-mediated signaling. tmpzr1t_l9r_go_relaxed.owl hjd 2017-09-18T16:44:05Z biological_process owl:Class GO:1904072 biolink:NamedThing presynaptic active zone disassembly The disaggregation of a presynaptic active zone into its constituent components. tmpzr1t_l9r_go_relaxed.owl pre-synaptic active zone disassembly|pre-synaptic active zone component disassembly pr 2015-03-20T10:36:33Z biological_process owl:Class GO:0045475 biolink:NamedThing locomotor rhythm The rhythm of the locomotor activity of an organism during its 24 hour activity cycle. tmpzr1t_l9r_go_relaxed.owl circadian locomotor activity rhythm biological_process owl:Class GO:0090064 biolink:NamedThing activation of microtubule nucleation Any process that starts the inactive process of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-12T11:36:15Z biological_process owl:Class GO:0030007 biolink:NamedThing cellular potassium ion homeostasis Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl GO:0017079 biological_process owl:Class GO:1904737 biolink:NamedThing positive regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation using acyl-CoA dehydrogenase. tmpzr1t_l9r_go_relaxed.owl activation of fatty acid beta-oxidation using acyl-CoA dehydrogenase|up-regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase|upregulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase|up regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase lb 2015-10-15T08:15:03Z biological_process owl:Class GO:0008617 biolink:NamedThing guanosine metabolic process The chemical reactions and pathways involving guanine, guanine riboside, a nucleoside with a wide species distribution. tmpzr1t_l9r_go_relaxed.owl guanosine metabolism biological_process owl:Class GO:0102152 biolink:NamedThing Delta12-linoleate epoxygenase activity Catalysis of the reaction: H+ + 1-palmitoyl-2-linoleoyl-phosphatidylcholine + NADPH + O2 <=> 1-palmitoyl-2-vernoloyl-phosphatidylcholine + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11671 molecular_function owl:Class GO:1900441 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms in response to neutral pH Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to neutral pH. tmpzr1t_l9r_go_relaxed.owl downregulation of filamentous growth of a population of unicellular organisms in response to neutral pH|down-regulation of filamentous growth of a population of unicellular organisms in response to neutral pH|down regulation of filamentous growth of a population of unicellular organisms in response to neutral pH|inhibition of filamentous growth of a population of unicellular organisms in response to neutral pH di 2012-04-25T05:55:57Z biological_process owl:Class GO:0006874 biolink:NamedThing cellular calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion concentration biological_process owl:Class GO:0016942 biolink:NamedThing insulin-like growth factor binding protein complex A complex of proteins which includes the insulin-like growth factor (IGF) and a number of IGF-binding proteins. The complex plays a role in growth and development. tmpzr1t_l9r_go_relaxed.owl IGF binding protein complex cellular_component owl:Class GO:0036454 biolink:NamedThing growth factor complex A protein complex that has growth factor activity. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-07T11:27:16Z cellular_component owl:Class GO:0019910 biolink:NamedThing mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex A mitochondrial complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. An example of this component is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'mitochondrial pyruvate dehydrogenase complex ; GO:0005967'. cellular_component owl:Class GO:0097132 biolink:NamedThing cyclin D2-CDK6 complex A protein complex consisting of cyclin D2 and cyclin-dependent kinase 6 (CDK6). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:56:34Z cellular_component owl:Class GO:0002313 biolink:NamedThing mature B cell differentiation involved in immune response The process in which a naive B cell acquires the specialized features of a mature or memory B cell during an immune response. tmpzr1t_l9r_go_relaxed.owl mature B lymphocyte differentiation during immune response|mature B-lymphocyte differentiation during immune response|mature B cell differentiation during immune response|mature B-cell differentiation during immune response|mature B cell development involved in immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1903237 biolink:NamedThing negative regulation of leukocyte tethering or rolling Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte tethering or rolling. tmpzr1t_l9r_go_relaxed.owl downregulation of leukocyte tethering or rolling|down regulation of leukocyte tethering or rolling|inhibition of leukocyte tethering or rolling|down-regulation of leukocyte tethering or rolling als 2014-07-31T13:07:55Z biological_process owl:Class GO:1903236 biolink:NamedThing regulation of leukocyte tethering or rolling Any process that modulates the frequency, rate or extent of leukocyte tethering or rolling. tmpzr1t_l9r_go_relaxed.owl als 2014-07-31T13:07:48Z biological_process owl:Class GO:0036422 biolink:NamedThing heptaprenyl diphosphate synthase activity Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 4 isopentenyl diphosphate = 4 diphosphate + all-trans-heptaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl heptaprenyl pyrophosphate synthase activity|all-trans-heptaprenyl-diphosphate synthase activity|heptaprenyl pyrophosphate synthetase activity|HepPP synthase activity MetaCyc:TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN|RHEA:27794|EC:2.5.1.30 bf 2013-09-16T11:50:41Z molecular_function owl:Class GO:0071654 biolink:NamedThing positive regulation of chemokine (C-C motif) ligand 1 production Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 1. tmpzr1t_l9r_go_relaxed.owl positive regulation of CCL1 production|positive regulation of TCA-3 production|positive regulation of T cell activation 3 production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0071652 biolink:NamedThing regulation of chemokine (C-C motif) ligand 1 production Any process that modulates the frequency, rate, or extent of production of chemokine (C-C motif) ligand 1. tmpzr1t_l9r_go_relaxed.owl regulation of TCA-3 production|regulation of T cell activation 3 production|regulation of CCL1 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:1903890 biolink:NamedThing positive regulation of plant epidermal cell differentiation Any process that activates or increases the frequency, rate or extent of plant epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of plant epidermal cell differentiation|upregulation of plant epidermal cell differentiation|up-regulation of plant epidermal cell differentiation|activation of plant epidermal cell differentiation tb 2015-02-06T22:30:02Z biological_process owl:Class GO:0046357 biolink:NamedThing galactarate biosynthetic process The chemical reactions and pathways resulting in the formation of galactarate, the anion of galactaric acid. tmpzr1t_l9r_go_relaxed.owl D-galactarate biosynthetic process|galactarate formation|D-galactarate biosynthesis|D-galactarate anabolism|galactarate synthesis|D-galactarate formation|galactarate biosynthesis|D-galactarate synthesis|galactarate anabolism GO:0042872 biological_process owl:Class GO:0061729 biolink:NamedThing GDP-mannose biosynthetic process from fructose-6-phosphate The chemical reactions and pathways resulting in the formation of GDP-mannose from fructose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-446205 dph 2015-07-24T14:50:44Z biological_process owl:Class GO:2000627 biolink:NamedThing positive regulation of miRNA catabolic process Any process that activates or increases the frequency, rate or extent of miRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of microRNA catabolic process dph 2011-04-18T03:46:42Z biological_process owl:Class GO:2000630 biolink:NamedThing positive regulation of miRNA metabolic process Any process that activates or increases the frequency, rate or extent of miRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of microRNA metabolic process dph 2011-04-18T03:48:01Z biological_process owl:Class GO:0000710 biolink:NamedThing meiotic mismatch repair A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules. Correction of the mismatch can result in non-Mendelian segregation of alleles following meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0040012 biolink:NamedThing regulation of locomotion Any process that modulates the frequency, rate or extent of locomotion of a cell or organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061258 biolink:NamedThing mesonephric glomerular visceral epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric glomerular visceral epithelial cell. A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:13:33Z biological_process owl:Class GO:0061251 biolink:NamedThing mesonephric glomerular epithelial cell development The process whose specific outcome is the progression of a mesonephric glomerular epithelial cell over time, from its formation to the mature structure. Mesonephric glomerular epithelial cells are specialized epithelial cells that form part of the mesonephric glomerulus; there are two types, mesonephric glomerular parietal epithelial cells and mesonephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:20:45Z biological_process owl:Class GO:0042328 biolink:NamedThing heparan sulfate N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + heparan sulfate = UDP + (N-acetyl-D-glucosaminyl)-heparan sulfate. tmpzr1t_l9r_go_relaxed.owl heparan sulphate N-acetylglucosaminyltransferase activity|heparin N-acetylglucosaminyltransferase activity molecular_function owl:Class GO:1990687 biolink:NamedThing endoplasmic reticulum-derived vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane The joining of the lipid bilayer membrane around an endoplasmic reticulum-derived vesicle to the lipid bilayer membrane of the ERGIC. Such vesicles include COPII-coated transport vesicles involved in anterograde transport. tmpzr1t_l9r_go_relaxed.owl ER-derived vesicle fusion with ERGIC membrane|ER-derived vesicle fusion with ER-Golgi intermediate compartment membrane bhm 2015-03-12T09:31:45Z biological_process owl:Class GO:1990668 biolink:NamedThing vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane of the ERGIC. This can involve anterograde or retrograde transport vesicles. tmpzr1t_l9r_go_relaxed.owl vesicle fusion with ER-Golgi intermediate compartment membrane|vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment membrane|vesicle fusion with ERGIC membrane|vesicle fusion with ER-Golgi intermediate compartment (ERGIC) membrane bhm 2015-03-02T11:17:32Z biological_process owl:Class GO:0140488 biolink:NamedThing heme receptor activity Binding specifically to heme to deliver it to a transport vesicle. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19699 pg 2020-06-29T14:16:16Z molecular_function owl:Class GO:0070639 biolink:NamedThing vitamin D2 metabolic process The chemical reactions and pathways involving vitamin D2, (3S,5Z,7E,22E)-9,10-secoergosta-5,7,10(19),22-tetraen-3-ol. tmpzr1t_l9r_go_relaxed.owl vitamin D2 metabolism|calciferol metabolic process|ergocalciferol metabolic process mah 2009-05-08T02:11:35Z biological_process owl:Class GO:0042359 biolink:NamedThing vitamin D metabolic process The chemical reactions and pathways involving vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl vitamin D metabolism|cholecalciferol metabolism|ergocalciferol metabolism|calciferol metabolism|cholecalciferol metabolic process|calciferol metabolic process|ergocalciferol metabolic process biological_process owl:Class GO:0047359 biolink:NamedThing 1-alkenyl-2-acylglycerol choline phosphotransferase activity Catalysis of the reaction: 1-alkenyl-2-acylglycerol + CDP-choline = plasmenylcholine + CMP. tmpzr1t_l9r_go_relaxed.owl CDP-choline:1-alkenyl-2-acylglycerol cholinephosphotransferase activity|CDP-choline-1-alkenyl-2-acyl-glycerol phosphocholinetransferase activity EC:2.7.8.22|MetaCyc:2.7.8.22-RXN|RHEA:36227 molecular_function owl:Class GO:0062036 biolink:NamedThing sensory perception of hot stimulus The series of events required for an organism to receive a hot temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-30T13:50:47Z biological_process owl:Class GO:0106383 biolink:NamedThing dAMP salvage Any process which produces a dAMP from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl hjd 2021-06-11T16:51:09Z biological_process owl:Class GO:0106381 biolink:NamedThing purine deoxyribonucleotide salvage Any process which produces a purine deoxyribonucleotide from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl hjd 2021-06-11T14:55:33Z biological_process owl:Class GO:1901331 biolink:NamedThing positive regulation of odontoblast differentiation Any process that activates or increases the frequency, rate or extent of odontoblast differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of odontoblast differentiation|up regulation of odontoblast differentiation|up-regulation of odontoblast differentiation|activation of odontoblast differentiation hjd 2012-08-31T16:50:35Z biological_process owl:Class GO:0051162 biolink:NamedThing L-arabitol metabolic process The chemical reactions and pathways involving L-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl L-arabitol metabolism biological_process owl:Class GO:0060835 biolink:NamedThing transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the specification of the oral/aboral axis. tmpzr1t_l9r_go_relaxed.owl transforming growth factor receptor beta signalling pathway involved in oral/aboral axis specification dph 2009-08-11T03:30:40Z biological_process owl:Class GO:2000080 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of canonical Wnt signaling pathway modulating the rate or frequency of pancreatic B cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation|negative regulation of canonical Wnt-activated signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of canonical Wnt receptor signaling pathway involved in controlling pancreatic B cell proliferation|negative regulation of canonical Wnt receptor signalling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of canonical Wnt receptor signalling pathway involved in controlling pancreatic B cell proliferation|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation tb 2010-08-27T11:22:58Z biological_process owl:Class GO:0006490 biolink:NamedThing oligosaccharide-lipid intermediate biosynthetic process The chemical reactions and pathways resulting in the formation of an oligosaccharide-lipid intermediate, such as a molecule of dolichol-P-man or dolicol-P-Glc used in N-linked glycosylation. tmpzr1t_l9r_go_relaxed.owl oligosaccharide-lipid intermediate assembly biological_process owl:Class GO:0062166 biolink:NamedThing negative regulation of pseudohyphal septin ring assembly Any process that decreases the rate, frequency or extent of pseudohyphal septin ring assembly. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-07T15:57:39Z biological_process owl:Class GO:0106167 biolink:NamedThing extracellular ATP signaling A series of molecular signals mediated by the detection of extracellular ATP. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-06T19:21:44Z biological_process owl:Class GO:0002770 biolink:NamedThing T cell inhibitory signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of a T cell capable of inhibiting an immune effector process contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl T cell inhibitory signalling pathway|T-cell inhibitory signaling pathway|T lymphocyte inhibitory signaling pathway|T-lymphocyte inhibitory signaling pathway biological_process owl:Class GO:0005796 biolink:NamedThing Golgi lumen The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061176 biolink:NamedThing type Ib terminal bouton Terminal inflated portion of the axon of a glutamatergic neuron, containing the specialized apparatus necessary for the tonic release neurotransmitters that will induce the contraction of muscle. Type Ib terminal boutons are larger than type Is terminal boutons. tmpzr1t_l9r_go_relaxed.owl type Ib terminal button dph 2010-07-13T09:20:04Z cellular_component owl:Class GO:0061174 biolink:NamedThing type I terminal bouton Terminal inflated portion of the axon of a glutamatergic neuron, containing the specialized apparatus necessary to release neurotransmitters that will induce the contraction of muscle. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it. tmpzr1t_l9r_go_relaxed.owl type I terminal button dph 2010-07-13T09:13:05Z cellular_component owl:Class GO:0102983 biolink:NamedThing xylogalacturonan beta-1,3-xylosyltransferase activity Catalysis of the reaction: UDP-alpha-D-xylose + a homogalacturonan <=> UDP + 4 H+ + a xylogalacturonan. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9589|EC:2.4.2.41 molecular_function owl:Class GO:1902332 biolink:NamedThing bacterial-type DNA replication DNA duplex unwinding Any DNA duplex unwinding that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA unwinding involved in bacterial-type DNA replication|duplex DNA melting involved in bacterial-type DNA replication|DNA duplex unwinding involved in bacterial-type DNA replication jl 2013-07-25T10:48:34Z biological_process owl:Class GO:0060275 biolink:NamedThing maintenance of stationary phase in response to starvation The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to limited nutrients in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060274 biolink:NamedThing maintenance of stationary phase The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction. Stationary phase can be in response to limited nutrients or a build-up of toxic substances in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901730 biolink:NamedThing monensin A biosynthetic process The chemical reactions and pathways resulting in the formation of monensin A. tmpzr1t_l9r_go_relaxed.owl monensin A synthesis|monensin A anabolism|monensin formation|monensin synthesis|monensin A biosynthesis|monensin anabolism|monensin A formation|monensin biosynthesis yaf 2013-01-09T11:55:53Z biological_process owl:Class GO:1901728 biolink:NamedThing monensin A metabolic process The chemical reactions and pathways involving monensin A. tmpzr1t_l9r_go_relaxed.owl monensin metabolism|monensin A metabolism yaf 2013-01-09T11:55:45Z biological_process owl:Class GO:0034377 biolink:NamedThing plasma lipoprotein particle assembly The non-covalent aggregation and arrangement of proteins and lipids to form a plasma lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0065005 biolink:NamedThing protein-lipid complex assembly The aggregation, arrangement and bonding together of proteins and lipids to form a protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033760 biolink:NamedThing 2'-deoxymugineic-acid 2'-dioxygenase activity Catalysis of the reaction: 2'-deoxymugineate + 2-oxoglutarate + O(2) = CO(2) + H(+) + mugineate + succinate. tmpzr1t_l9r_go_relaxed.owl IDS3|2'-deoxymugineic acid,2-oxoglutarate:oxygen oxidoreductase (2-hydroxylating) activity RHEA:12200|KEGG_REACTION:R07185|MetaCyc:1.14.11.24-RXN|EC:1.14.11.24 molecular_function owl:Class GO:0007136 biolink:NamedThing meiotic prophase II The cell cycle phase which is the first stage of meiosis II and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0072655 biolink:NamedThing establishment of protein localization to mitochondrion The directed movement of a protein to the mitochondrion or a part of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization in mitochondrion|establishment of protein localisation to mitochondrion mah 2011-02-14T02:28:54Z biological_process owl:Class GO:0003884 biolink:NamedThing D-amino-acid oxidase activity Catalysis of the reaction: a D-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl L-amino acid:O2 oxidoreductase activity|D-amino-acid:oxygen oxidoreductase (deaminating)|new yellow enzyme EC:1.4.3.3|MetaCyc:D-AMINO-ACID-OXIDASE-RXN|Reactome:R-HSA-389821|RHEA:21816 molecular_function owl:Class GO:0008762 biolink:NamedThing UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl uridine-5'-diphospho-N-acetyl-2-amino-2-deoxy-3-O-lactylglucose:NADP-oxidoreductase activity|uridine diphosphoacetylpyruvoylglucosamine reductase activity|UDP-GlcNAc-enoylpyruvate reductase activity|uridine diphospho-N-acetylglucosamine-enolpyruvate reductase activity|UDP-N-acetylmuramate:NADP+ oxidoreductase activity|UDP-N-acetylglucosamine-enoylpyruvate reductase activity|UDP-N-acetylenolpyruvoylglucosamine reductase activity|MurB reductase RHEA:12248|MetaCyc:UDPNACETYLMURAMATEDEHYDROG-RXN|EC:1.3.1.98 molecular_function owl:Class GO:0006475 biolink:NamedThing internal protein amino acid acetylation The addition of an acetyl group to a non-terminal amino acid in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047656 biolink:NamedThing alpha,alpha-trehalose phosphorylase activity Catalysis of the reaction: alpha,alpha-trehalose + phosphate = D-glucose + beta-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl trehalose phosphorylase|alpha,alpha-trehalose:phosphate beta-D-glucosyltransferase activity|a,a-trehalose phosphorylase activity EC:2.4.1.64|RHEA:23512|MetaCyc:ALPHAALPHA-TREHALOSE-PHOSPHORYLASE-RXN molecular_function owl:Class GO:0070944 biolink:NamedThing neutrophil-mediated killing of bacterium The directed killing of a bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated killing of bacterium mah 2009-10-01T01:55:56Z biological_process owl:Class GO:0051020 biolink:NamedThing GTPase binding Binding to a GTPase, any enzyme that catalyzes the hydrolysis of GTP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140282 biolink:NamedThing carbon-nitrogen ligase activity on lipid II Catalysis of the reaction: L-glutamine + lipid II + ATP + H2O = L-glutamate + beta-D-GlcNAc(1->4)-Mur2Ac(oyl-L-Ala-D-isoGln-L-Lys-D-Ala-D-Ala)-diphospho-di-trans,octa-cis-undecaprenol + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl pentapeptide amidotransferase (glutamine-hydrolyzing) activity|L-glutamate--lipid II transaminase activity https://github.com/geneontology/go-ontology/issues/16422 RHEA:57928|EC:6.3.5.13 pg 2018-10-08T19:12:57Z molecular_function owl:Class GO:0016884 biolink:NamedThing carbon-nitrogen ligase activity, with glutamine as amido-N-donor Catalysis of the transfer of the amide nitrogen of glutamine to a substrate. Usually composed of two subunits or domains, one that first hydrolyzes glutamine, and then transfers the resulting ammonia to the second subunit (or domain), where it acts as a source of nitrogen. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16422 EC:6.3.5.- GO:0016003 molecular_function owl:Class GO:0060731 biolink:NamedThing positive regulation of intestinal epithelial structure maintenance Any process the increases the rate, frequency or extent of intestinal epithelial structure maintenance, a tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T01:51:50Z biological_process owl:Class GO:0004306 biolink:NamedThing ethanolamine-phosphate cytidylyltransferase activity Catalysis of the reaction: CTP + ethanolamine phosphate = diphosphate + CDP-ethanolamine. tmpzr1t_l9r_go_relaxed.owl ethanolamine phosphate cytidylyltransferase activity|CTP-phosphoethanolamine cytidylyltransferase activity|ET|CTP:ethanolamine-phosphate cytidylyltransferase activity|phosphoethanolamine cytidylyltransferase activity|CTP:phosphoethanolamine cytidylyltransferase activity|phosphorylethanolamine transferase activity RHEA:24592|EC:2.7.7.14|MetaCyc:2.7.7.14-RXN|Reactome:R-HSA-1483190 molecular_function owl:Class GO:2000801 biolink:NamedThing negative regulation of endocardial cushion to mesenchymal transition involved in heart valve formation Any process that stops, prevents or reduces the frequency, rate or extent of endocardial cushion to mesenchymal transition involved in heart valve formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of endocardial cushion to mesenchymal transition involved in valve formation bf 2011-07-01T12:31:22Z biological_process owl:Class GO:0140050 biolink:NamedThing negative regulation of endocardial cushion to mesenchymal transition Any process that stops, prevents or reduces the frequency, rate or extent of endocardial cushion to mesenchymal transition. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-26T09:02:27Z biological_process owl:Class GO:0005506 biolink:NamedThing iron ion binding Binding to an iron (Fe) ion. tmpzr1t_l9r_go_relaxed.owl iron binding molecular_function owl:Class GO:0046914 biolink:NamedThing transition metal ion binding Binding to a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009033 biolink:NamedThing trimethylamine-N-oxide reductase activity Catalysis of the reaction: NADH + H+ + trimethylamine-N-oxide = NAD+ + trimethylamine + H2O. tmpzr1t_l9r_go_relaxed.owl trimethylamine oxide reductase|trimethylamine N-oxide reductase|trimethylamine oxidase activity|NADH:trimethylamine-N-oxide oxidoreductase MetaCyc:TMAOREDUCT-RXN|RHEA:22024 molecular_function owl:Class GO:0032525 biolink:NamedThing somite rostral/caudal axis specification The establishment, maintenance and elaboration of the rostro-caudal axis of a somite, prior to the morphological formation of a somite boundary. tmpzr1t_l9r_go_relaxed.owl somite rostrocaudal polarity|somite rostrocaudal axis specification biological_process owl:Class GO:0009948 biolink:NamedThing anterior/posterior axis specification The establishment, maintenance and elaboration of the anterior/posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. tmpzr1t_l9r_go_relaxed.owl anterior/posterior axis determination biological_process owl:Class GO:1905379 biolink:NamedThing beta-N-acetylhexosaminidase complex A protein complex which is capable of beta-N-acetylhexosaminidase activity. tmpzr1t_l9r_go_relaxed.owl HEX S complex|HEX B complex|HEX A complex An example of this is HEXB in human (UniProt symbol P07686) in PMID:6458607 (inferred from direct assay). bhm 2016-08-18T08:26:15Z cellular_component owl:Class GO:0036193 biolink:NamedThing 2-hydroxy-1,4-benzoxazin-3-one monooxygenase activity Catalysis of the reaction: 2-hydroxy-2H-1,4-benzoxazin-3(4H)-one + NAD(P)H + H+ + O2 = 2,4-dihydroxy-2H-1,4-benzoxazin-3(4H)-one + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.110|RHEA:31939|KEGG_REACTION:R07423 bf 2012-04-19T11:54:34Z molecular_function owl:Class GO:0120210 biolink:NamedThing rod telodendria Rod telodendria are projections that originate from the rod pedicle and form gap junctions with other photoreceptors within the outer plexiform layer of the retina. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-21T00:34:22Z cellular_component owl:Class GO:0120208 biolink:NamedThing telodendria Telodendria are projections that originate from the axon pedicle and form gap junctions with other neurons. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-20T23:50:28Z cellular_component owl:Class GO:0004140 biolink:NamedThing dephospho-CoA kinase activity Catalysis of the reaction: 3'-dephospho-CoA + ATP = ADP + CoA + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:dephospho-CoA 3'-phosphotransferase activity|dephosphocoenzyme A kinase activity|dephosphocoenzyme A kinase (phosphorylating)|3'-dephospho-CoA kinase activity EC:2.7.1.24|RHEA:18245|MetaCyc:DEPHOSPHOCOAKIN-RXN|KEGG_REACTION:R00130|Reactome:R-HSA-196773 molecular_function owl:Class GO:0004021 biolink:NamedThing L-alanine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + L-alanine = L-glutamate + pyruvate. tmpzr1t_l9r_go_relaxed.owl alanine aminotransferase activity|pyruvate-alanine aminotransferase activity|pyruvate-glutamate transaminase activity|glutamic-pyruvic aminotransferase activity|alanine-pyruvate aminotransferase activity|alanine transaminase activity|beta-alanine aminotransferase|ALT|glutamic acid-pyruvic acid transaminase activity|GPT|L-alanine aminotransferase activity|L-alanine transaminase activity|L-alanine-alpha-ketoglutarate aminotransferase activity|glutamic--alanine transaminase activity|alanine-alpha-ketoglutarate aminotransferase activity|pyruvate transaminase activity|glutamic--pyruvic transaminase activity Reactome:R-HSA-70524|EC:2.6.1.2|RHEA:19453|MetaCyc:ALANINE-AMINOTRANSFERASE-RXN|Reactome:R-HSA-507775|Reactome:R-HSA-70523|KEGG_REACTION:R00258|Reactome:R-HSA-507749 molecular_function owl:Class GO:0047635 biolink:NamedThing alanine-oxo-acid transaminase activity Catalysis of the reaction: L-alanine + a 2-oxo acid = pyruvate + an L-amino acid. tmpzr1t_l9r_go_relaxed.owl leucine-alanine transaminase activity|alanine-oxo-acid aminotransferase activity|alanine--oxo-acid aminotransferase activity|L-alanine:2-oxo-acid aminotransferase activity|L-alanine-alpha-keto acid aminotransferase activity|alanine-oxo acid aminotransferase activity|alanine-keto acid aminotransferase activity RHEA:19953|EC:2.6.1.12|MetaCyc:ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0036476 biolink:NamedThing neuron death in response to hydrogen peroxide Any biological process that results in permanent cessation of all vital functions of a neuron upon exposure to hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl neuronal cell death in response to hydrogen peroxide|hydrogen peroxide-induced neuron death|neuron death in response to H2O2 This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide or use of neuron-specific markers) show that neuron death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the neuron death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death', GO:0006915 'apoptotic process' or GO:0010421 'hydrogen peroxide-mediated programmed cell death'), and the cell type captured as an annotation extension; or the term GO:0051402 'neuron apoptotic process' may be considered, if appropriate. bf 2014-07-21T11:46:31Z biological_process owl:Class GO:0036474 biolink:NamedThing cell death in response to hydrogen peroxide Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl hydrogen peroxide-mediated cell death|cell death in response to H2O2 This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0010421 'hydrogen peroxide-mediated programmed cell death'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term. bf 2014-07-21T11:42:28Z biological_process owl:Class GO:1901533 biolink:NamedThing negative regulation of hematopoietic progenitor cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of hemopoietic progenitor cell differentiation|inhibition of hemopoietic progenitor cell differentiation|inhibition of hematopoietic progenitor cell differentiation|negative regulation of haemopoietic progenitor cell differentiation|down regulation of hematopoietic progenitor cell differentiation|down-regulation of haemopoietic progenitor cell differentiation|downregulation of haemopoietic progenitor cell differentiation|inhibition of haematopoietic progenitor cell differentiation|down regulation of hemopoietic progenitor cell differentiation|down-regulation of hematopoietic progenitor cell differentiation|downregulation of haematopoietic progenitor cell differentiation|negative regulation of haematopoietic progenitor cell differentiation|inhibition of haemopoietic progenitor cell differentiation|down regulation of haemopoietic progenitor cell differentiation|down-regulation of hemopoietic progenitor cell differentiation|downregulation of hematopoietic progenitor cell differentiation|down regulation of haematopoietic progenitor cell differentiation|downregulation of hemopoietic progenitor cell differentiation|down-regulation of haematopoietic progenitor cell differentiation vk 2012-10-24T11:23:06Z biological_process owl:Class GO:0015224 biolink:NamedThing biopterin transmembrane transporter activity Enables the transfer of biopterin from one side of a membrane to the other. Biopterin is a growth factor for certain protozoans and some insects; it is widely distributed in tissues and functions in a reduced form, tetrahydrobiopterin, as a hydroxylation coenzyme. tmpzr1t_l9r_go_relaxed.owl biopterin transporter activity molecular_function owl:Class GO:0046457 biolink:NamedThing prostanoid biosynthetic process The chemical reactions and pathways resulting in the formation of prostanoids, any compound based on or derived from the prostanoate structure. tmpzr1t_l9r_go_relaxed.owl prostanoid anabolism|prostanoid synthesis|prostanoid biosynthesis|prostanoid formation Wikipedia:Prostanoid#Biosynthesis biological_process owl:Class GO:0009903 biolink:NamedThing chloroplast avoidance movement The relocation process in which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery. tmpzr1t_l9r_go_relaxed.owl high-fluence-rate response biological_process owl:Class GO:0098874 biolink:NamedThing spike train A series of sequential, propagated action potentials occurring in a single cell. tmpzr1t_l9r_go_relaxed.owl spike-train|burst of action potentials GO:0099603 biological_process owl:Class GO:0070106 biolink:NamedThing interleukin-27-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-27 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-27-mediated signalling pathway|IL27RA/IL6ST signaling pathway|IL-27-mediated signaling pathway biological_process owl:Class GO:1902380 biolink:NamedThing positive regulation of endoribonuclease activity Any process that activates or increases the frequency, rate or extent of endoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl upregulation of endoribonuclease activity|up-regulation of endonuclease G activity|positive regulation of endonuclease G activity|activation of endonuclease G activity|up regulation of endonuclease G activity|upregulation of endonuclease G activity|up-regulation of endoribonuclease activity|up regulation of endoribonuclease activity|activation of endoribonuclease activity bf 2013-09-02T14:14:29Z biological_process owl:Class GO:2000839 biolink:NamedThing positive regulation of androstenedione secretion Any process that activates or increases the frequency, rate or extent of androstenedione secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of androst-4-ene-3,17-dione secretion bf 2011-07-26T08:40:42Z biological_process owl:Class GO:1905576 biolink:NamedThing ganglioside GT1b binding Binding to ganglioside GT1b. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T11:17:17Z molecular_function owl:Class GO:0005129 biolink:NamedThing granulocyte macrophage colony-stimulating factor receptor binding Binding to a granulocyte macrophage colony-stimulating factor receptor. tmpzr1t_l9r_go_relaxed.owl GM-CSF receptor binding|granulocyte macrophage colony stimulating factor receptor binding|granulocyte macrophage colony-stimulating factor receptor ligand|granulocyte macrophage colony-stimulating factor|GM-CSF receptor ligand|GMC-SF receptor ligand molecular_function owl:Class GO:0015366 biolink:NamedThing malate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: malate(out) + H+(out) = malate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl malate:hydrogen symporter activity|L-malic acid:proton symporter activity|malate permease|L-malic acid permease molecular_function owl:Class GO:0016144 biolink:NamedThing S-glycoside biosynthetic process The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. tmpzr1t_l9r_go_relaxed.owl S-glycoside formation|thioglycoside biosynthetic process|S-glycoside biosynthesis|S-glycoside synthesis|S-glycoside anabolism|thioglycoside biosynthesis biological_process owl:Class GO:0032204 biolink:NamedThing regulation of telomere maintenance Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016993 biolink:NamedThing precorrin-8X methylmutase activity Catalysis of the reaction: precorrin-8X = hydrogenobyrinate. tmpzr1t_l9r_go_relaxed.owl precorrin isomerase activity|HBA synthase activity|precorrin-8X 11,12-methylmutase activity|hydrogenobyrinic acid-binding protein activity MetaCyc:5.4.1.2-RXN|RHEA:22512|EC:5.4.99.61 molecular_function owl:Class GO:0030164 biolink:NamedThing protein denaturation Structural change in proteins which destroys the native, active configuration without rupture of peptide bonds. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Denaturation#Protein_denaturation biological_process owl:Class GO:0048797 biolink:NamedThing swim bladder formation The process that gives rise to the swim bladder. This process pertains to the initial formation of a structure from unspecified parts. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ. tmpzr1t_l9r_go_relaxed.owl gas bladder formation|gas bladder biosynthesis biological_process owl:Class GO:0047898 biolink:NamedThing formate dehydrogenase (cytochrome) activity Catalysis of the reaction: formate + ferricytochrome b1 = CO2 + ferrocytochrome b1. tmpzr1t_l9r_go_relaxed.owl formate:ferricytochrome-b1 oxidoreductase activity|formate:cytochrome b1 oxidoreductase activity EC:1.2.2.1|RHEA:21520|MetaCyc:FORMATE-DEHYDROGENASE-CYTOCHROME-RXN molecular_function owl:Class GO:0016622 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl EC:1.2.2.- molecular_function owl:Class GO:1901395 biolink:NamedThing regulation of transforming growth factor beta2 activation Any process that modulates the frequency, rate or extent of transforming growth factor beta2 activation. tmpzr1t_l9r_go_relaxed.owl regulation of TGF-beta 2 activation|regulation of TGFbeta 2 activation|regulation of TGFB2 activation bf 2012-10-01T10:46:50Z biological_process owl:Class GO:0030786 biolink:NamedThing (RS)-norcoclaurine 6-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (RS)-norcoclaurine = S-adenosyl-L-homocysteine + (RS)-coclaurine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(RS)-norcoclaurine 6-O-methyltransferase activity RHEA:19941|MetaCyc:2.1.1.128-RXN|EC:2.1.1.128 molecular_function owl:Class GO:0005524 biolink:NamedThing ATP binding Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-265682 molecular_function owl:Class GO:1903121 biolink:NamedThing regulation of TRAIL-activated apoptotic signaling pathway Any process that modulates the frequency, rate or extent of TRAIL-activated apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|regulation of TRAIL-induced apoptotic signaling pathway|regulation of TRAIL-activated extrinsic apoptotic signaling pathway bf 2014-06-17T12:39:15Z biological_process owl:Class GO:0005684 biolink:NamedThing U2-type spliceosomal complex Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron that has canonical consensus sequences near the 5' and 3' ends. tmpzr1t_l9r_go_relaxed.owl major (U2-type) spliceosomal complex|GT-AG spliceosome|major spliceosomal complex A U2-type complex refers to any of the snRNP-based complexes that form during splicing that uses U2 (as opposed to U12). There are complexes that form during U2-splicing that don't necessarily contain the U2 snRNP. cellular_component owl:Class GO:0045114 biolink:NamedThing beta 2 integrin biosynthetic process The chemical reactions and pathways resulting in the formation of beta 2 integrins, a subfamily of integrins which contain the beta 2 subunit. tmpzr1t_l9r_go_relaxed.owl beta 2 integrin anabolism|beta 2 integrin synthesis|beta 2 integrin biosynthesis|beta 2 integrin formation biological_process owl:Class GO:0042070 biolink:NamedThing maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification Maintenance of the oocyte nucleus in a particular position within the cell during the establishment and maintenance of the axes of the oocyte. An example of this process is found In Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte axis determination, oocyte nucleus anchoring|maintenance of oocyte nucleus location involved in oocyte dorsoventral axis specification|oocyte axis determination, maintenance of oocyte nucleus localization|maintenance of oocyte nucleus localization during oocyte axis determination|maintenance of oocyte nucleus location involved in oocyte dorsal-ventral axis specification|oocyte nucleus anchoring during oocyte axis determination|maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis determination|oocyte axis determination, maintenance of oocyte nucleus position|maintenance of oocyte nucleus position during oocyte axis determination GO:0048127 biological_process owl:Class GO:0002076 biolink:NamedThing osteoblast development The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140193 biolink:NamedThing regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process Any process that modulates the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in some heart process. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-15T19:08:49Z biological_process owl:Class GO:0016760 biolink:NamedThing cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). tmpzr1t_l9r_go_relaxed.owl UDP-glucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity|uridine diphosphoglucose-cellulose glucosyltransferase activity|beta-glucan synthase activity|1,4-beta-glucan synthase activity|UDP-glucose-cellulose glucosyltransferase activity|UDPglucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity|beta-1,4-glucan synthetase activity|beta-1,4-glucan synthase activity|GS-I|UDPglucose-cellulose glucosyltransferase activity|glucan synthase activity|UDPglucose-beta-glucan glucosyltransferase activity|uridine diphosphoglucose-1,4-beta-glucan glucosyltransferase activity|beta-1,4-glucosyltransferase activity|1,4-beta-D-glucan synthase activity|UDP-glucose-1,4-beta-glucan glucosyltransferase activity|UDP-glucose-beta-D-glucan glucosyltransferase activity MetaCyc:CELLULOSE-SYNTHASE-UDP-FORMING-RXN|EC:2.4.1.12|RHEA:19929 molecular_function owl:Class GO:0030419 biolink:NamedThing nicotianamine catabolic process The chemical reactions and pathways resulting in the breakdown of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl nicotianamine catabolism|nicotianamine degradation|nicotianamine breakdown biological_process owl:Class GO:0030417 biolink:NamedThing nicotianamine metabolic process The chemical reactions and pathways involving nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl nicotianamine metabolism biological_process owl:Class GO:0018892 biolink:NamedThing cyclohexylsulfamate metabolic process The chemical reactions and pathways involving cyclohexylsulfamate, also known as cyclamic acid. Sodium cyclohexylsulfamate (CHS-Na) was a widely used sweetening agent but was banned because of the suspicion of carcinogenicity and metabolic conversion to cyclohexylamine (CHA), a toxic substance. It is now used as a fungicide. tmpzr1t_l9r_go_relaxed.owl cyclohexylsulfamate metabolism|cyclohexylsulphamate metabolism|cyclohexylsulphamate metabolic process UM-BBD_pathwayID:chs biological_process owl:Class GO:1904118 biolink:NamedThing regulation of otic vesicle morphogenesis Any process that modulates the frequency, rate or extent of otic vesicle morphogenesis. tmpzr1t_l9r_go_relaxed.owl pga 2015-04-07T14:00:56Z biological_process owl:Class GO:0014850 biolink:NamedThing response to muscle activity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014823 biolink:NamedThing response to activity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus. tmpzr1t_l9r_go_relaxed.owl response to exercise biological_process owl:Class GO:0048775 biolink:NamedThing regulation of leucophore differentiation Any process that modulates the frequency, rate or extent of leucophore differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017185 biolink:NamedThing peptidyl-lysine hydroxylation The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080084 biolink:NamedThing 5S rDNA binding Binding to a 5S rDNA sequence, encoding ribosomal 5S rRNA, which is individually transcribed by RNA polymerase III, rather than by RNA polymerase I, in species where it exists. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T02:32:20Z molecular_function owl:Class GO:0000182 biolink:NamedThing rDNA binding Binding to a DNA sequence encoding a ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl ribosomal DNA binding molecular_function owl:Class GO:0061900 biolink:NamedThing glial cell activation A change in morphology and behavior of a glial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-13T13:06:23Z biological_process owl:Class GO:0000707 biolink:NamedThing meiotic DNA recombinase assembly During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000730 biolink:NamedThing DNA recombinase assembly The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) into higher order oligomers on single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl Rad51 nucleoprotein filament formation biological_process owl:Class GO:2001188 biolink:NamedThing regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell Any process that modulates the frequency, rate or extent of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell. tmpzr1t_l9r_go_relaxed.owl regulation of T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|regulation of T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|regulation of T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell yaf 2011-11-03T01:31:30Z biological_process owl:Class GO:0060793 biolink:NamedThing sweat gland placode formation The developmental process in which the sweat gland placode forms. An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:38:10Z biological_process owl:Class GO:0002388 biolink:NamedThing immune response in Peyer's patch Immune response taking place in the Peyer's patch, nodular lymphoid structures on the serosal surface of the small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002387 biolink:NamedThing immune response in gut-associated lymphoid tissue Immune response taking place in the gut-associated lymphoid tissue (GALT). GALT includes Peyer's patches, appendix, and solitary lymph nodules. tmpzr1t_l9r_go_relaxed.owl immune response in GALT biological_process owl:Class GO:0003219 biolink:NamedThing cardiac right ventricle formation The developmental process pertaining to the initial formation of a right cardiac ventricle from unspecified parts. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:55:38Z biological_process owl:Class GO:0080073 biolink:NamedThing spermidine:coumaroyl CoA N-acyltransferase activity Catalysis of the transfer of a coumaroyl group to a nitrogen atom on the spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T04:16:59Z molecular_function owl:Class GO:0047978 biolink:NamedThing hexadecanol dehydrogenase activity Catalysis of the reaction: hexadecanol + NAD+ = hexadecanal + NADH. tmpzr1t_l9r_go_relaxed.owl hexadecanol:NAD+ oxidoreductase activity MetaCyc:HEXADECANOL-DEHYDROGENASE-RXN|EC:1.1.1.164|RHEA:22056 molecular_function owl:Class GO:0070187 biolink:NamedThing shelterin complex A nuclear telomere cap complex that is formed by the association of telomeric ssDNA- and dsDNA-binding proteins with telomeric DNA, and is involved in telomere protection and recruitment of telomerase. The complex is known to contain TERF1, TERF2, POT1, RAP1, TINF2 and ACD in mammalian cells, and Pot1, Tpz1, Rap1, Rif1, Rif2 and Taz1 in Saccharomyces. Taz1 and Rap1 (or their mammalian equivalents) form a dsDNA-binding subcomplex, Pot1 and Tpz1 form an ssDNA-binding subcomplex, and the two subcomplexes are bridged by Poz1, which acts as an effector molecule along with Ccq1. tmpzr1t_l9r_go_relaxed.owl Pot1 complex|Pot1-Tpz1 complex|telosome cellular_component owl:Class GO:0000783 biolink:NamedThing nuclear telomere cap complex A complex of DNA and protein located at the end of a linear chromosome in the nucleus that protects and stabilizes a linear chromosome. tmpzr1t_l9r_go_relaxed.owl Note that this term can be used in place of the obsolete cellular component term 'telomere ; GO:0005696'. Use with caution because this term refers to a specific protein complex and not a region of the chromosome. cellular_component owl:Class GO:0022401 biolink:NamedThing negative adaptation of signaling pathway The negative regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus. tmpzr1t_l9r_go_relaxed.owl negative adaptation of signalling pathway|negative adaptation of signal transduction pathway biological_process owl:Class GO:0003022 biolink:NamedThing detection of pH by chemoreceptor signaling The process in which information about the levels of hydrogen ions are received and are converted to a molecular signal by chemoreceptors. tmpzr1t_l9r_go_relaxed.owl detection of pH by chemoreceptor signalling biological_process owl:Class GO:0003030 biolink:NamedThing detection of hydrogen ion The series of events in which a hydrogen ion stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030687 biolink:NamedThing preribosome, large subunit precursor A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl 66S preribosome Note that this complex is 66S in Saccharomyces. cellular_component owl:Class GO:0030684 biolink:NamedThing preribosome Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010183 biolink:NamedThing pollen tube guidance The process in which the growth of pollen tube is directed towards the female gametophyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051349 biolink:NamedThing positive regulation of lyase activity Any process that activates or increases the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. tmpzr1t_l9r_go_relaxed.owl up-regulation of lyase activity|stimulation of lyase activity|upregulation of lyase activity|lyase activator|up regulation of lyase activity|activation of lyase activity biological_process owl:Class GO:0089720 biolink:NamedThing caspase binding Binding to a caspase family protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031508 biolink:NamedThing pericentric heterochromatin assembly The assembly of chromatin located adjacent to the CENP-A rich centromere 'central core' and characterized by the modified histone H3K9me3, into heterochromatin, resulting in the repression of transcription of centromeric DNA. tmpzr1t_l9r_go_relaxed.owl centromeric heterochromatin biosynthesis|heterochromatic silencing at centromere|chromatin silencing at centromere|chromatin silencing at pericentric region|centromere chromatin silencing|chromatin silencing at centromere outer repeat region|centric heterochromatin formation|centromeric heterochromatin formation|centromeric silencing https://github.com/geneontology/go-ontology/issues/19112|https://github.com/geneontology/go-ontology/issues/18954 mah 2013-07-17T15:21:38Z GO:0030702|GO:1990141 biological_process owl:Class GO:0086097 biolink:NamedThing phospholipase C-activating angiotensin-activated signaling pathway An angiotensin-mediated signaling pathway where the activated receptor transmits the signal via Gq-mediated activation of phospholipase C (PLC). PLC hydrolyses phosphatidylinositol 4,5-bisphosphate (PIP2) into the second messengers inositol-1,4,5,-triphosphate (IP3) and diacylglycerol (DAG). DAG activates protein kinase C (PKC), whilst IP3 binds intracellular receptors to induce the release of Ca2+ from intracellular stores. tmpzr1t_l9r_go_relaxed.owl phospholipase C-activating angiotensin receptor signaling pathway|Gq-coupled angiotensin receptor signaling pathway|angiotensin-mediated signaling pathway via activation of phospholipase C|phospholipase C-activating angiotensin-mediated signaling pathway|PLC-activating angiotensin receptor signaling pathway bf 2012-06-13T11:28:15Z biological_process owl:Class GO:0140318 biolink:NamedThing protein transporter activity Directly binding to a specific protein and delivering it to a specific cellular location. tmpzr1t_l9r_go_relaxed.owl protein transport chaperone|protein carrier activity https://github.com/geneontology/go-ontology/issues/17073 Reactome:R-HSA-9662747|Reactome:R-HSA-9662818 Examples of protein carriers include the soluble TIM chaperone complexes of S. cerevisiae Tim9-Tim10 and Tim8-Tim13, that provide a shuttle system between TOM and the membrane insertases TIM22 and SAM and, thus, ensure that precursors are kept in a translocation-competent conformation. pg 2019-04-01T10:41:38Z molecular_function owl:Class GO:0005215 biolink:NamedThing transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl carrier EC:7.-.-.-|Reactome:R-HSA-178215|Reactome:R-HSA-168313 Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules. GO:0005478 molecular_function owl:Class GO:0045038 biolink:NamedThing protein import into chloroplast thylakoid membrane The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma. tmpzr1t_l9r_go_relaxed.owl protein transport into chloroplast thylakoid membrane|chloroplast thylakoid membrane protein import biological_process owl:Class GO:0043686 biolink:NamedThing co-translational protein modification The process of covalently altering one or more amino acids in a protein after translation has begun but before the protein has been released from the ribosome. tmpzr1t_l9r_go_relaxed.owl co-translational amino acid modification|cotranslational protein modification|cotranslational modification|co-translational modification|cotranslational amino acid modification This term should only be used to annotate a protein modification process that occurs after the start of translation but while the protein is still on the ribosome. biological_process owl:Class GO:1990795 biolink:NamedThing rod bipolar cell terminal bouton A specialized region of the axon terminus portion of a rod bipolar axon. A rod bipolar cell is a neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T21:11:53Z cellular_component owl:Class GO:0043126 biolink:NamedThing regulation of 1-phosphatidylinositol 4-kinase activity Any process that modulates the activity of the enzyme 1-phosphatidylinositol 4-kinase. tmpzr1t_l9r_go_relaxed.owl regulation of PI4K activity biological_process owl:Class GO:0061536 biolink:NamedThing glycine secretion The controlled release of glycine by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:18:23Z biological_process owl:Class GO:1900917 biolink:NamedThing regulation of octadecene metabolic process Any process that modulates the frequency, rate or extent of octadecene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of octadecene metabolism tt 2012-06-13T04:26:11Z biological_process owl:Class GO:0072376 biolink:NamedThing protein activation cascade A response to a stimulus that consists of a sequential series of modifications to a set of proteins where the product of one reaction acts catalytically in the following reaction. The magnitude of the response is typically amplified at each successive step in the cascade. Modifications typically include proteolysis or covalent modification, and may also include binding events. tmpzr1t_l9r_go_relaxed.owl protein activitory cascade|protein activation pathway mah 2010-11-22T02:54:18Z biological_process owl:Class GO:0051613 biolink:NamedThing positive regulation of serotonin uptake Any process that activates or increases the frequency, rate or extent of the directed movement of serotonin into a cell. tmpzr1t_l9r_go_relaxed.owl up regulation of serotonin uptake|stimulation of serotonin uptake|up-regulation of serotonin uptake|activation of serotonin uptake|positive regulation of 5-HT uptake|upregulation of serotonin uptake|positive regulation of 5HT uptake|positive regulation of serotonin import|positive regulation of 5-hydroxytryptamine uptake biological_process owl:Class GO:0043199 biolink:NamedThing sulfate binding Binding to sulfate, SO4(2-), a negatively charged small molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099589 biolink:NamedThing serotonin receptor activity Combining with the biogenic amine serotonin and transmitting a signal across a membrane by activating some effector activity. Serotonin (5-hydroxytryptamine) is a neurotransmitter and hormone found in vertebrates and invertebrates. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031380 biolink:NamedThing nuclear RNA-directed RNA polymerase complex A complex required for RNAi mediated heterochromatin assembly. In S. pombe this contains RNA-directed RNA polymerase, a putative helicase and a protein containing a pap25 associated domain. tmpzr1t_l9r_go_relaxed.owl RDRC|Rdr1 complex cellular_component owl:Class GO:0032474 biolink:NamedThing otolith morphogenesis The process in which the anatomical structures of an otolith are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0101012 biolink:NamedThing inositol 1,5-bisdiphosphate 2,3,4,6-tetrakisphosphate 1-diphosphatase activity Catalysis of the reaction: myo-inositol 1,5-bisdiphosphate 2,3,4,6-tetrakisphosphate + H2O = myo-inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol 1,5-bispyrophosphate 2,3,4,6-tetrakisphosphate 1-pyrophosphatase activity molecular_function owl:Class GO:1905157 biolink:NamedThing positive regulation of photosynthesis Any process that activates or increases the frequency, rate or extent of photosynthesis. tmpzr1t_l9r_go_relaxed.owl upregulation of photosynthesis|activation of photosynthesis|up regulation of photosynthesis|up-regulation of photosynthesis tb 2016-04-19T16:12:39Z biological_process owl:Class GO:0001537 biolink:NamedThing N-acetylgalactosamine 4-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-acetyl-D-galactosamine = adenosine 3',5'-bisphosphate + N-acetyl-D-galactosamine 4-sulfate. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine 4-O-sulphotransferase activity Reactome:R-HSA-3636919|Reactome:R-HSA-2022063|Reactome:R-HSA-6786034 molecular_function owl:Class GO:2000703 biolink:NamedThing negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of fibroblast growth factor receptor signaling pathway of ureteric bud formation|negative regulation of FGF receptor signaling pathway of ureteric bud formation|negative regulation of fibroblast growth factor receptor signalling pathway of ureteric bud formation|negative regulation of FGFR signaling pathway of ureteric bud formation|negative regulation of FGF receptor signalling pathway of ureteric bud formation yaf 2011-05-25T09:48:22Z biological_process owl:Class GO:0002027 biolink:NamedThing regulation of heart rate Any process that modulates the frequency or rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl regulation of heart contraction rate|cardiac chronotropy|regulation of rate of heart contraction biological_process owl:Class GO:0015195 biolink:NamedThing L-threonine transmembrane transporter activity Enables the transfer of L-threonine from one side of a membrane to the other. L-threonine is (2R*,3S*)-2-amino-3-hydroxybutanoic acid. tmpzr1t_l9r_go_relaxed.owl threonine/serine:sodium symporter activity|L-threonine permease activity|L-threonine transporter activity GO:0015512 molecular_function owl:Class GO:0010839 biolink:NamedThing negative regulation of keratinocyte proliferation Any process that decreases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001989 biolink:NamedThing positive regulation of the force of heart contraction involved in baroreceptor response to decreased systemic arterial blood pressure Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as part of the baroreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl increased strength of cardiac contraction during baroreceptor response to decreased blood pressure|positive regulation of the force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure|increased force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure biological_process owl:Class GO:1904989 biolink:NamedThing positive regulation of endothelial cell activation Any process that activates or increases the frequency, rate or extent of endothelial cell activation. tmpzr1t_l9r_go_relaxed.owl upregulation of endothelial cell activation|up-regulation of endothelial cell activation|up regulation of endothelial cell activation|activation of endothelial cell activation bc 2016-02-29T16:16:25Z biological_process owl:Class GO:0008180 biolink:NamedThing COP9 signalosome A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. tmpzr1t_l9r_go_relaxed.owl CSN|COP9 complex|signalosome cellular_component owl:Class GO:0071422 biolink:NamedThing succinate transmembrane transport The process in which succinate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane succinate transport|succinate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-12-15T03:29:44Z biological_process owl:Class GO:0015744 biolink:NamedThing succinate transport The directed movement of succinate, the dianion of ethane dicarboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110156 biolink:NamedThing methylguanosine-cap decapping Cleavage of the 5'-methylguanosine-cap of an mRNA. The methylguanosine-cap is present at the 5'-end of eukaryotic mRNAs. Decapping inactivates translation initiation and promotes 5'-to-3' decay of mRNA. tmpzr1t_l9r_go_relaxed.owl kmv 2019-07-08T17:31:07Z biological_process owl:Class GO:0102447 biolink:NamedThing rhamnetin 3'-O-methyltransferase activity Catalysis of the reaction: rhamnetin + S-adenosyl-L-methionine <=> 7,3'-dimethylquercetin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13933 molecular_function owl:Class GO:1903337 biolink:NamedThing positive regulation of vacuolar transport Any process that activates or increases the frequency, rate or extent of vacuolar transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of vacuolar transport|activation of vacuolar transport|upregulation of vacuolar transport|up regulation of vacuolar transport vw 2014-08-18T13:16:19Z biological_process owl:Class GO:0030559 biolink:NamedThing rRNA pseudouridylation guide activity Specifies the site of pseudouridylation in an rRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0030558 biolink:NamedThing RNA pseudouridylation guide activity Specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0031571 biolink:NamedThing mitotic G1 DNA damage checkpoint signaling A signal transduction process that contributes to a mitotic cell cycle G1/S transition DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl intracellular signaling cascade involved in G1 DNA damage checkpoint|intracellular signaling chain involved in G1/S DNA damage checkpoint|intracellular signaling pathway involved in G1 DNA damage checkpoint|signal transduction via intracellular signaling cascade involved in G1/S DNA damage checkpoint|signal transduction involved in mitotic G1 DNA damage checkpoint|intracellular signaling cascade involved in G1/S DNA damage checkpoint|signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint|intracellular signal transduction pathway involved in G1 DNA damage checkpoint|mitotic G1 DNA damage checkpoint|G1 DNA damage checkpoint|intracellular signal transduction involved in G1 DNA damage checkpoint|signal transduction via intracellular signaling cascade involved in G1 DNA damage checkpoint|intracellular signal transduction pathway involved in G1/S DNA damage checkpoint|intracellular signaling chain involved in G1 DNA damage checkpoint|signal transmission via intracellular cascade involved in G1 DNA damage checkpoint|mitotic cell cycle G1/S transition DNA damage checkpoint|intracellular signaling pathway involved in G1/S DNA damage checkpoint|intracellular signal transduction involved in G1/S DNA damage checkpoint|G1/S DNA damage checkpoint GO:0044783|GO:1902400|GO:0072431 biological_process owl:Class GO:0045190 biolink:NamedThing isotype switching The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus. tmpzr1t_l9r_go_relaxed.owl class switching|class switch recombination|isotype switch recombination Wikipedia:Immunoglobulin_class_switching Note that IgM and IgD can be coexpressed by B cells via an alternate splicing mechanism, but true recombinational isotype switching to IgD has been demonstrated as well. Note that this term is best used to annotate gene products which are involved in the mechanism of DNA recombination used in isotype switching, like the B cell specific Swap70 factor in the mouse, rather than gene products which promote isotype switching such as cytokines or co-stimulatory molecules, which should instead be annotated to 'regulation of isotype switching ; GO:0045191'. biological_process owl:Class GO:0002312 biolink:NamedThing B cell activation involved in immune response The change in morphology and behavior of a mature or immature B cell during an immune response, resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl B lymphocyte activation during immune response|B cell activation during immune response|B-cell activation during immune response|B-lymphocyte activation during immune response biological_process owl:Class GO:0046199 biolink:NamedThing cresol catabolic process The chemical reactions and pathways resulting in the breakdown of cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote. tmpzr1t_l9r_go_relaxed.owl cresol degradation|cresol breakdown|cresol catabolism biological_process owl:Class GO:1901072 biolink:NamedThing glucosamine-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of glucosamine-containing compounds (glucosamines). tmpzr1t_l9r_go_relaxed.owl glucosamine-containing compound breakdown|glucosamines breakdown|glucosamines catabolic process|glucosamine-containing compound catabolism|glucosamine-containing compound degradation|glucosamines degradation|glucosamines catabolism bf 2012-07-02T03:18:25Z biological_process owl:Class GO:0032531 biolink:NamedThing regulation of follicle cell microvillus organization Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a microvillus on a follicle cell. tmpzr1t_l9r_go_relaxed.owl regulation of follicle cell microvillus organization and biogenesis|regulation of follicle cell microvillus organisation biological_process owl:Class GO:0009394 biolink:NamedThing 2'-deoxyribonucleotide metabolic process The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyribonucleotide metabolism biological_process owl:Class GO:0009262 biolink:NamedThing deoxyribonucleotide metabolic process The chemical reactions and pathways involving a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleotide metabolism GO:0009122|GO:0009393 biological_process owl:Class GO:0047862 biolink:NamedThing diisopropyl-fluorophosphatase activity Catalysis of the reaction: diisopropyl fluorophosphate + H(2)O = diisopropyl phosphate + 2 H(+) + hydrogen fluoride. tmpzr1t_l9r_go_relaxed.owl diisopropyl phosphorofluoridate hydrolase activity|OPAA activity|diisopropylfluorophosphonate dehalogenase activity|somanase activity|diisopropylphosphofluoridase activity|organophosphorus acid anhydrolase activity|dialkylfluorophosphatase activity|organophosphate acid anhydrase activity|isopropylphosphorofluoridase activity|diisopropyl-fluorophosphate fluorohydrolase activity|tabunase activity|DFPase activity|OPA anhydrase activity MetaCyc:DIISOPROPYL-FLUOROPHOSPHATASE-RXN|KEGG_REACTION:R01533|RHEA:24100|EC:3.1.8.2 molecular_function owl:Class GO:0016795 biolink:NamedThing phosphoric triester hydrolase activity Catalysis of the hydrolysis of a phosphoric triester. tmpzr1t_l9r_go_relaxed.owl EC:3.1.8.- molecular_function owl:Class GO:0045069 biolink:NamedThing regulation of viral genome replication Any process that modulates the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061122 biolink:NamedThing positive regulation of positive chemotaxis to cAMP Any process that increases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:25:55Z biological_process owl:Class GO:0030047 biolink:NamedThing actin modification Covalent modification of an actin molecule. tmpzr1t_l9r_go_relaxed.owl GO:0007013 biological_process owl:Class GO:1903442 biolink:NamedThing response to lipoic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-17T13:52:03Z biological_process owl:Class GO:0022022 biolink:NamedThing septal cell proliferation The multiplication or reproduction of septal cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl septum cell proliferation biological_process owl:Class GO:0098682 biolink:NamedThing arciform density An electron dense structure that anchors a synaptic ribbon to the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T16:12:22Z cellular_component owl:Class GO:0071219 biolink:NamedThing cellular response to molecule of bacterial origin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. tmpzr1t_l9r_go_relaxed.owl cellular response to bacteria associated molecule|cellular response to bacterial associated molecule|cellular response to bacterium associated molecule mah 2009-12-03T01:22:00Z biological_process owl:Class GO:0010270 biolink:NamedThing photosystem II oxygen evolving complex assembly The aggregation, arrangement and bonding together of a set of components to form the oxygen evolving complex (OEC) of photosystem II on a thylakoid membrane. The OEC protects the calcium-4 manganese-5 oxide cluster which is bound to the D1 and CP43 proteins. The exact protein composition of the OEC varies between cyanobacteria and plants, and in plants consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ. tmpzr1t_l9r_go_relaxed.owl OEC (PSII) ASSEMBLY biological_process owl:Class GO:0010207 biolink:NamedThing photosystem II assembly The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002409 biolink:NamedThing Langerhans cell chemotaxis The movement of a Langerhans cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061411 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to cold Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T12:31:33Z biological_process owl:Class GO:1903745 biolink:NamedThing negative regulation of pharyngeal pumping Any process that stops, prevents or reduces the frequency, rate or extent of pharyngeal pumping. tmpzr1t_l9r_go_relaxed.owl down regulation of pharyngeal pumping|inhibition of pumping behavior|down-regulation of pumping behavior|downregulation of pharyngeal pumping|down regulation of pumping behavior|downregulation of pumping behavior|down-regulation of pharyngeal pumping|negative regulation of pumping behavior|inhibition of pharyngeal pumping kmv 2014-12-12T17:10:59Z biological_process owl:Class GO:0048209 biolink:NamedThing regulation of vesicle targeting, to, from or within Golgi Any process that modulates the frequency, rate, or destination of vesicle-mediated transport to, from or within the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl regulation of Golgi vesicle targeting biological_process owl:Class GO:0046159 biolink:NamedThing ocellus pigment catabolic process The chemical reactions and pathways resulting in the breakdown of ocellus pigments, any general or particular coloring matter in living organisms, found or utilized in the ocellus, a minute simple eye found in many invertebrates. tmpzr1t_l9r_go_relaxed.owl ocellus pigment catabolism|ocellus pigment degradation|ocellus pigment breakdown biological_process owl:Class GO:0010418 biolink:NamedThing rhamnogalacturonan II backbone metabolic process The chemical reactions and pathways involving the backbone structure of pectic rhamnogalacturonan II. The back bone contains at least 8 1,4-linked alpha-D-GalpA residues. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan II backbone metabolism biological_process owl:Class GO:0010394 biolink:NamedThing homogalacturonan metabolic process The chemical reactions and pathways involving homogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. tmpzr1t_l9r_go_relaxed.owl homogalacturonan metabolism biological_process owl:Class GO:0047686 biolink:NamedThing arylsulfate sulfotransferase activity Catalysis of the reaction: an aryl sulfate + a phenol = a phenol + an aryl sulfate. tmpzr1t_l9r_go_relaxed.owl ASST|arylsulphate sulphotransferase activity|arylsulfotransferase|arylsulfate:phenol sulfotransferase activity|arylsulfate-phenol sulfotransferase activity RHEA:51072|EC:2.8.2.22|MetaCyc:ARYLSULFATE-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:1905672 biolink:NamedThing negative regulation of lysosome organization Any process that stops, prevents or reduces the frequency, rate or extent of lysosome organization. tmpzr1t_l9r_go_relaxed.owl down regulation of lysosome organization and biogenesis|down regulation of lysosome organisation|downregulation of lysosome organisation|down-regulation of lysosome organization and biogenesis|inhibition of lysosome organization|negative regulation of lysosome organisation|downregulation of lysosome organization and biogenesis|downregulation of lysosome organization|inhibition of lysosome organization and biogenesis|inhibition of lysosome organisation|down-regulation of lysosome organization|negative regulation of lysosome organization and biogenesis|down-regulation of lysosome organisation|down regulation of lysosome organization sl 2016-11-11T22:01:12Z biological_process owl:Class GO:2000612 biolink:NamedThing regulation of thyroid-stimulating hormone secretion Any process that modulates the frequency, rate or extent of thyroid-stimulating hormone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of thyroid stimulating hormone secretion|regulation of TSH secretion yaf 2011-04-18T12:56:16Z biological_process owl:Class GO:1905276 biolink:NamedThing regulation of epithelial tube formation Any process that modulates the frequency, rate or extent of epithelial tube formation. tmpzr1t_l9r_go_relaxed.owl An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-06-20T09:35:41Z biological_process owl:Class GO:0004342 biolink:NamedThing glucosamine-6-phosphate deaminase activity Catalysis of the reaction: D-glucosamine 6-phosphate + H(2)O = beta-D-fructose 6-phosphate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl glucosamine phosphate deaminase activity|glucosaminephosphate isomerase|phosphoglucosamine isomerase activity|phosphoglucosaminisomerase activity|GlcN6P deaminase activity|glucosamine-6-phosphate isomerase activity|aminodeoxyglucosephosphate isomerase activity|2-amino-2-deoxy-D-glucose-6-phosphate aminohydrolase (ketol isomerizing) EC:3.5.99.6|Reactome:R-HSA-6799604|RHEA:12172|MetaCyc:GLUCOSAMINE-6-P-DEAMIN-RXN|KEGG_REACTION:R00765 Note that this function was formerly EC:5.3.1.10. molecular_function owl:Class GO:0030120 biolink:NamedThing vesicle coat A membrane coat found on a coated vesicle. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1177708494 cellular_component owl:Class GO:0110082 biolink:NamedThing regulation of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly Any process that modulates the frequency, rate or extent of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T19:25:06Z biological_process owl:Class GO:0003240 biolink:NamedThing conus arteriosus formation The developmental process pertaining to the initial formation of the conus arteriosus from unspecified parts. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:25:47Z biological_process owl:Class GO:0003207 biolink:NamedThing cardiac chamber formation The developmental process pertaining to the initial formation of a cardiac chamber from unspecified parts. A cardiac chamber is an enclosed cavity within the heart. tmpzr1t_l9r_go_relaxed.owl heart chamber formation dph 2009-10-13T09:29:13Z biological_process owl:Class GO:0033743 biolink:NamedThing peptide-methionine (R)-S-oxide reductase activity Catalysis of the reaction: peptide-L-methionine + H(2)O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl methionine S-oxide reductase (R-form oxidizing) activity|protein-methionine-R-oxide reductase activity|PilB|methionine sulfoxide reductase B activity|methionine sulfoxide reductase activity|selenoprotein R|pMSR|MsrB|SelR|methionine S-oxide reductase activity|pMRsr|peptide-methionine:thioredoxin-disulfide S-oxidoreductase [methionine (R)-S-oxide-forming] activity|SelX MetaCyc:1.8.4.12-RXN|EC:1.8.4.12|Reactome:R-HSA-5676917|RHEA:24164|KEGG_REACTION:R07607 GO:0000318 molecular_function owl:Class GO:1901845 biolink:NamedThing negative regulation of cell communication by electrical coupling involved in cardiac conduction Any process that stops, prevents or reduces the frequency, rate or extent of cell communication by electrical coupling involved in cardiac conduction. tmpzr1t_l9r_go_relaxed.owl down regulation of cell communication by electrical coupling involved in cardiac conduction|down-regulation of cell communication by electrical coupling involved in cardiac conduction|downregulation of cell communication by electrical coupling involved in cardiac conduction|inhibition of cell communication by electrical coupling involved in cardiac conduction rl 2013-01-24T19:15:44Z biological_process owl:Class GO:0102240 biolink:NamedThing soyasapogenol B glucuronide galactosyltransferase activity Catalysis of the reaction: UDP-D-galactose + soyasapogenol B 3-O-beta-glucuronate <=> H+ + UDP + soyasaponin III. tmpzr1t_l9r_go_relaxed.owl RHEA:31487|MetaCyc:RXN-12319|EC:2.4.1.272 molecular_function owl:Class GO:0010317 biolink:NamedThing pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex Refers to the alpha subunit of the heterodimeric complex that possesses pyrophosphate-dependent phosphofructokinase activity. tmpzr1t_l9r_go_relaxed.owl PFK complex, alpha-subunit cellular_component owl:Class GO:0047604 biolink:NamedThing acetoin racemase activity Catalysis of the reaction: (S)-acetoin = (R)-acetoin. tmpzr1t_l9r_go_relaxed.owl acetylmethylcarbinol racemase activity EC:5.1.2.4|KEGG_REACTION:R02949|RHEA:12092|MetaCyc:ACETOIN-RACEMASE-RXN molecular_function owl:Class GO:0097108 biolink:NamedThing hedgehog family protein binding Binding to a member of the hedgehog protein family, signaling proteins involved in development. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-28T10:06:45Z molecular_function owl:Class GO:0010415 biolink:NamedThing unsubstituted mannan metabolic process The chemical reactions and pathways involving the mannan backbone, the unsubstituted polymer of D-mannose units. tmpzr1t_l9r_go_relaxed.owl unsubstituted mannan metabolism biological_process owl:Class GO:0010412 biolink:NamedThing mannan metabolic process The chemical reactions and pathways involving mannan, a group of polysaccharides containing a backbone composed of a polymer of D-mannose units. tmpzr1t_l9r_go_relaxed.owl mannan metabolism biological_process owl:Class GO:0061189 biolink:NamedThing positive regulation of sclerotome development Any process that increases the rate, frequency, or extent of the progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T09:17:23Z biological_process owl:Class GO:0061190 biolink:NamedThing regulation of sclerotome development Any process that modulates the rate, frequency, or extent of the progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T09:19:47Z biological_process owl:Class GO:0047451 biolink:NamedThing 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity Catalysis of the reaction: (3R)-3-hydroxyoctanoyl-[acyl-carrier protein] = H2O + 2-octenoyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl beta-hydroxyoctanoyl-acyl carrier protein dehydrase activity|D-3-hydroxyoctanoyl-[acyl carrier protein] dehydratase activity|3-hydroxyoctanoyl-ACP dehydratase activity|3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase activity|D-3-hydroxyoctanoyl-acyl carrier protein dehydratase activity|(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein] hydro-lyase activity|(3R)-3-hydroxyoctanoyl-acyl-carrier-protein hydro-lyase (oct-2-enoyl-acyl-carrier protein-forming)|3-hydroxyoctanoyl-acyl-carrier-protein dehydratase activity|beta-hydroxyoctanoyl-ACP-dehydrase activity|(3R)-3-hydroxyoctanoyl-acyl-carrier-protein hydro-lyase activity|beta-hydroxyoctanoyl thioester dehydratase activity RHEA:41844|KEGG_REACTION:R04537|EC:4.2.1.59|MetaCyc:4.2.1.59-RXN molecular_function owl:Class GO:0002227 biolink:NamedThing innate immune response in mucosa Any process of the innate immune response that takes place in the mucosal tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047778 biolink:NamedThing [citrate-(pro-3S)-lyase] thiolesterase activity Catalysis of the reaction: [citrate (pro-3S)-lyase](acetyl form) + H2O = [citrate (pro-3S)-lyase](thiol form) + acetate. tmpzr1t_l9r_go_relaxed.owl citrate-(pro-3S)-lyase thiolesterase activity|citrate-(pro-3S)-lyase(acetyl-form) hydrolase activity|citrate lyase deacetylase activity|[citrate-(pro-3S)-lyase] thioesterase activity|citrate (pro-3S)-lyase thiolesterase activity|citrate-(pro-3S)-lyase thioesterase activity MetaCyc:CITRATE-PRO-3S-LYASE-THIOLESTERASE-RXN|RHEA:13657|EC:3.1.2.16 molecular_function owl:Class GO:0051710 biolink:NamedThing regulation of cytolysis in other organism Any process that modulates the frequency, rate or extent of the cytolysis by an organism of cells in another organism. tmpzr1t_l9r_go_relaxed.owl regulation of cytolysis of cells of another organism|regulation of cytolysis of cells of another, non-host, organism GO:0001902 biological_process owl:Class GO:0042268 biolink:NamedThing regulation of cytolysis Any process that modulates the frequency, rate or extent of the rupture of cell membranes and the loss of cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903629 biolink:NamedThing positive regulation of dUTP diphosphatase activity Any process that activates or increases the frequency, rate or extent of dUTP diphosphatase activity. tmpzr1t_l9r_go_relaxed.owl activation of dUTP diphosphatase activity|up-regulation of dUTPase activity|activation of deoxyuridine-triphosphatase activity|activation of dUTP nucleotidohydrolase activity|up-regulation of deoxyuridine-triphosphatase activity|upregulation of dUTP pyrophosphatase activity|positive regulation of dUTPase activity|positive regulation of desoxyuridine 5'-triphosphatase activity|activation of desoxyuridine 5'-triphosphatase activity|up-regulation of dUTP diphosphatase activity|positive regulation of dUTP nucleotidohydrolase activity|up regulation of dUTPase activity|up-regulation of dUTP nucleotidohydrolase activity|upregulation of dUTPase activity|activation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|up regulation of dUTP nucleotidohydrolase activity|upregulation of dUTP nucleotidohydrolase activity|upregulation of dUTP diphosphatase activity|up regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|upregulation of desoxyuridine 5'-triphosphatase activity|up regulation of desoxyuridine 5'-triphosphatase activity|positive regulation of deoxyuridine-triphosphatase activity|up regulation of deoxyuridine-triphosphatase activity|up-regulation of desoxyuridine 5'-triphosphatase activity|up regulation of dUTP pyrophosphatase activity|upregulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|positive regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|positive regulation of dUTP pyrophosphatase activity|up-regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|activation of dUTP pyrophosphatase activity|upregulation of deoxyuridine-triphosphatase activity|up regulation of dUTP diphosphatase activity|activation of dUTPase activity|up-regulation of dUTP pyrophosphatase activity sl 2014-11-20T00:00:56Z biological_process owl:Class GO:0046745 biolink:NamedThing viral capsid secondary envelopment The process in which a capsid acquires another membrane envelope, subsequent to acquiring an initial membrane envelope. tmpzr1t_l9r_go_relaxed.owl virus budding from ER membrane by viral capsid re-envelopment|endoplasmic reticulum membrane viral budding during viral capsid re-envelopment|plasma membrane viral budding during viral capsid re-envelopment|virus budding from Golgi membrane by viral capsid re-envelopment|viral budding from ER membrane during viral capsid re-envelopment|virus budding from plasma membrane during viral capsid re-envelopment|viral budding from nuclear membrane during viral capsid re-envelopment|viral budding from inner nuclear membrane by viral capsid re-envelopment|virus budding from outer nuclear membrane during viral capsid re-envelopment|ER membrane viral budding during viral capsid re-envelopment|virus budding from Golgi membrane during viral capsid re-envelopment|virus budding from ER membrane during viral capsid re-envelopment|viral budding from Golgi membrane by viral capsid re-envelopment|viral budding from inner nuclear membrane during viral capsid re-envelopment|nuclear membrane viral budding during viral capsid re-envelopment|viral budding from nuclear membrane by viral capsid re-envelopment|viral budding from outer nuclear membrane during viral capsid re-envelopment|virus budding from inner nuclear membrane by viral capsid re-envelopment|virus budding from nuclear membrane by viral capsid re-envelopment|viral budding from Golgi membrane during viral capsid re-envelopment|Golgi membrane viral budding during viral capsid re-envelopment|virus budding from inner nuclear membrane during viral capsid re-envelopment|outer nuclear membrane viral budding during viral capsid re-envelopment|viral budding from outer nuclear membrane by viral capsid re-envelopment|viral budding from plasma membrane during viral capsid re-envelopment|viral capsid re-envelopment|viral budding from ER membrane by viral capsid re-envelopment|inner nuclear membrane viral budding during viral capsid re-envelopment|virus budding from nuclear membrane during viral capsid re-envelopment|viral budding from plasma membrane by viral capsid re-envelopment|virus budding from outer nuclear membrane by viral capsid re-envelopment GO:0046748|GO:0046747|GO:0046746|GO:0046769|GO:0046768|GO:0046770 biological_process owl:Class GO:0033506 biolink:NamedThing glucosinolate biosynthetic process from homomethionine The chemical reactions and pathways resulting in the formation of glucosinolates from other compounds including homomethionine. tmpzr1t_l9r_go_relaxed.owl glucosinolate formation from homomethionine|glucosinolate anabolism from homomethionine|glucosinolate synthesis from homomethionine|glucosinolate biosynthesis from homomethionine MetaCyc:PWY-1187 biological_process owl:Class GO:0016319 biolink:NamedThing mushroom body development The process whose specific outcome is the progression of the mushroom body over time, from its formation to the mature structure. The mushroom body is composed of the prominent neuropil structures of the insect central brain, thought to be crucial for olfactory associated learning. These consist mainly of a bulbous calyx and tightly packaged arrays of thin parallel fibers of the Kenyon cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000342 biolink:NamedThing negative regulation of chemokine (C-X-C motif) ligand 2 production Any process that stops, prevents or reduces the frequency, rate or extent of chemokine (C-X-C motif) ligand 2 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of SCYB2 production|negative regulation of MIP-2 production|inhibition of chemokine (C-C motif) ligand 2 secretion|inhibition of CCL2 secretion|negative regulation of CXCL2 production|negative regulation of chemokine (C-C motif) ligand 2 secretion|negative regulation of MIP2 production mah 2011-02-01T11:57:17Z GO:1904208 biological_process owl:Class GO:0035244 biolink:NamedThing peptidyl-arginine C-methyltransferase activity Catalysis of the transfer of a methyl group to the carbon atom of an arginine residue in a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004666 biolink:NamedThing prostaglandin-endoperoxide synthase activity Catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl prostaglandin synthetase activity|fatty acid cyclooxygenase activity|prostaglandin synthase activity|prostaglandin G/H synthase activity|(PG)H synthase activity|PG synthetase activity|(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate,hydrogen-donor:oxygen oxidoreductase activity|prostaglandin endoperoxide synthetase activity RHEA:23728|Reactome:R-HSA-140355|EC:1.14.99.1|MetaCyc:PROSTAGLANDIN-ENDOPEROXIDE-SYNTHASE-RXN|Reactome:R-HSA-2309787 molecular_function owl:Class GO:0047223 biolink:NamedThing beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the reaction: beta-D-galactosyl-1,3-(N-acetyl-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,3-(N-acetyl-beta-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP. tmpzr1t_l9r_go_relaxed.owl elongation 3-beta-GalNAc-transferase activity|uridine diphosphoacetylglucosamine-mucin beta(1->3)-acetylglucosaminyltransferase (elongating)|O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II activity|elongation 3beta-GalNAc-transferase activity|UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to -D-galactose of beta-D-galactosyl-1,3-(N-acetyl-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R) beta-1,3-N-acetyl-D-glucosaminyltransferase activity Reactome:R-HSA-5617096|EC:2.4.1.146|MetaCyc:2.4.1.146-RXN|Reactome:R-HSA-5617037 molecular_function owl:Class GO:0033162 biolink:NamedThing melanosome membrane The lipid bilayer surrounding a melanosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032761 biolink:NamedThing positive regulation of lymphotoxin A production Any process that activates or increases the frequency, rate, or extent of lymphotoxin A production. tmpzr1t_l9r_go_relaxed.owl positive regulation of lymphotoxin-alpha production|positive regulation of TNF-beta production|stimulation of lymphotoxin A production|positive regulation of LTA production|up-regulation of lymphotoxin A production|upregulation of lymphotoxin A production|activation of lymphotoxin A production|positive regulation of tumor necrosis factor-beta production|positive regulation of lymphotoxin A biosynthetic process|up regulation of lymphotoxin A production GO:0043017 biological_process owl:Class GO:1900697 biolink:NamedThing positive regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process Any process that activates or increases the frequency, rate or extent of N',N'',N'''-triacetylfusarinine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of N',N'',N'''-triacetylfusarinine C synthesis|upregulation of N',N'',N'''-triacetylfusarinine C formation|upregulation of N',N'',N'''-triacetylfusarinine C biosynthesis|up regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|activation of N',N'',N'''-triacetylfusarinine C anabolism|upregulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|up regulation of N',N'',N'''-triacetylfusarinine C formation|activation of N',N'',N'''-triacetylfusarinine C biosynthesis|up regulation of N',N'',N'''-triacetylfusarinine C anabolism|positive regulation of N',N'',N'''-triacetylfusarinine C anabolism|up-regulation of N',N'',N'''-triacetylfusarinine C formation|up regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|activation of N',N'',N'''-triacetylfusarinine C biosynthetic process|up-regulation of N',N'',N'''-triacetylfusarinine C anabolism|positive regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|positive regulation of N',N'',N'''-triacetylfusarinine C formation|activation of N',N'',N'''-triacetylfusarinine C synthesis|upregulation of N',N'',N'''-triacetylfusarinine C anabolism|upregulation of N',N'',N'''-triacetylfusarinine C synthesis|positive regulation of N',N'',N'''-triacetylfusarinine C synthesis|up-regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|up-regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|activation of N',N'',N'''-triacetylfusarinine C formation|up regulation of N',N'',N'''-triacetylfusarinine C synthesis di 2012-05-22T04:54:56Z biological_process owl:Class GO:0051873 biolink:NamedThing killing by host of symbiont cells Any process mediated by an organism that results in the death of cells in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl disruption by host of symbiont cells https://github.com/geneontology/go-ontology/issues/18719 GO:0051852 biological_process owl:Class GO:0015690 biolink:NamedThing aluminum cation transport The directed movement of aluminum (Al) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl aluminium transport|aluminum transport|aluminium ion transport|aluminum ion transport biological_process owl:Class GO:0030001 biolink:NamedThing metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl divalent metal ion transport|heavy metal ion transport GO:0070838 biological_process owl:Class GO:0060702 biolink:NamedThing negative regulation of endoribonuclease activity Any process that decreases the rate, frequency or extent of the catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:52:27Z biological_process owl:Class GO:0010562 biolink:NamedThing positive regulation of phosphorus metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901379 biolink:NamedThing regulation of potassium ion transmembrane transport Any process that modulates the frequency, rate or extent of potassium ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of potassium ion membrane transport rl 2012-09-28T15:58:00Z biological_process owl:Class GO:0009421 biolink:NamedThing bacterial-type flagellum filament cap The proteinaceous structure at the distal tip of the bacterial-type flagellar filament. tmpzr1t_l9r_go_relaxed.owl flagellar filament cap|flagellin-based flagellum filament cap cellular_component owl:Class GO:1990715 biolink:NamedThing mRNA CDS binding Binding to an mRNA molecule coding sequence (CDS). tmpzr1t_l9r_go_relaxed.owl mRNA coding sequence binding|mRNA coding region binding kmv 2015-03-27T20:59:49Z molecular_function owl:Class GO:0070726 biolink:NamedThing cell wall assembly The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-16T03:58:20Z biological_process owl:Class GO:0046079 biolink:NamedThing dUMP catabolic process The chemical reactions and pathways resulting in the breakdown of dUMP, deoxyuridine (5'-)monophosphate. tmpzr1t_l9r_go_relaxed.owl dUMP breakdown|dUMP catabolism|dUMP degradation biological_process owl:Class GO:0061584 biolink:NamedThing hypocretin secretion The controlled release of hypocretin from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl orexin secretion dph 2013-12-26T10:07:38Z biological_process owl:Class GO:0034933 biolink:NamedThing 1-hydroxy-6-methoxypyrene methyltransferase activity Catalysis of the reaction: 1-hydroxy-6-methoxypyrene + XCH3 = 1,6-dimethoxypyrene + HX. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0956 molecular_function owl:Class GO:0106101 biolink:NamedThing ER-dependent peroxisome localization A process in which a protein is transported to, or maintained at, a location in a peroxisome via the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl hjd 2018-02-15T17:54:20Z biological_process owl:Class GO:0072662 biolink:NamedThing protein localization to peroxisome A process in which a protein is transported to, or maintained at, a location in a peroxisome. tmpzr1t_l9r_go_relaxed.owl protein localisation to peroxisome mah 2011-02-14T02:50:04Z biological_process owl:Class GO:0033474 biolink:NamedThing indoleacetic acid conjugate biosynthetic process The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid conjugate formation|indoleacetic acid conjugate biosynthesis|indoleacetic acid conjugate anabolism|indole acetic acid conjugate biosynthesis|indoleacetic acid conjugate synthesis|IAA conjugate biosynthetic process|indole acetic acid conjugate biosynthetic process biological_process owl:Class GO:0090245 biolink:NamedThing axis elongation involved in somitogenesis The developmental growth that results in the elongation of the rostral-caudal axis that contributes to somitogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T10:54:29Z biological_process owl:Class GO:0018157 biolink:NamedThing peptide cross-linking via an oxazole or thiazole The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl glycine, or peptidyl cysteine-peptidyl glycine cross-link by the condensation of the serine hydroxyl or cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl peptide heterocycle synthesis|peptide heterocycle biosynthesis|peptide heterocycle biosynthetic process|peptide heterocycle formation biological_process owl:Class GO:0060470 biolink:NamedThing positive regulation of cytosolic calcium ion concentration involved in egg activation The process that increases the concentration of calcium ions in the cytosol after fertilization or the physiological activation of an egg. tmpzr1t_l9r_go_relaxed.owl elevation of cytosolic calcium ion concentration involved in egg activation biological_process owl:Class GO:0047780 biolink:NamedThing citrate dehydratase activity Catalysis of the reaction: citrate = cis-aconitate + H2O. tmpzr1t_l9r_go_relaxed.owl citrate hydro-lyase (cis-aconitate-forming)|citrate hydro-lyase activity|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity EC:4.2.1.3|RHEA:10228|MetaCyc:CITRATE-DEHYDRATASE-RXN|MetaCyc:ACONITATEDEHYDR-RXN|KEGG_REACTION:R01325 This term is also a sub-reaction of 'aconitate hydratase activity ; GO:0003994 (EC:4.2.1.3)'. GO:0052632 molecular_function owl:Class GO:1990563 biolink:NamedThing extracellular exosome complex A protein complex that is wholly or partially contained within the lumen or membrane of the extracellular vesicular exosome. tmpzr1t_l9r_go_relaxed.owl exosome complex|extracellular vesicular exosome complex An example of this is SCD1 in human (UniProt symbol P18827) in PMID:22660413 (inferred from physical interaction). bhm 2014-11-25T16:35:53Z cellular_component owl:Class GO:0031153 biolink:NamedThing slug development involved in sorocarp development The process whose specific outcome is the progression of the slug over time, from its formation to the mature structure. Slug development begins when the aggregate rises upwards to form a finger-shaped structure and ends when culmination begins. Slug development begins after aggregation and ends before culmination in sorocarp development. tmpzr1t_l9r_go_relaxed.owl pseudoplasmodium biosynthesis|standing slug development during sorocarp development|migratory slug development during sorocarp development|slug development during sorocarp development|pseudoplasmodium formation|slug development during fruiting body development biological_process owl:Class GO:0099120 biolink:NamedThing socially cooperative development The process whose specific outcome is the progression of a non-reproductive fruiting body over time, from its formation to the mature structure. A non-reproductive fruiting body is a colonial multicellular structure consisting of co-operating unicellular organisms, some of which are spores. An example of such a process is found in Dictyostelium discoideum and Myxococcus xanthus colonies. tmpzr1t_l9r_go_relaxed.owl colonial development|socially co-operative development|non-reproductive fruiting body development https://github.com/geneontology/go-ontology/issues/20428 GO:0090702 biological_process owl:Class GO:0048089 biolink:NamedThing regulation of female pigmentation Any process that modulates the frequency, rate or extent of establishment of a pattern of pigment in females. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902724 biolink:NamedThing positive regulation of skeletal muscle satellite cell proliferation Any process that activates or increases the frequency, rate or extent of skeletal muscle satellite cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of satellite cell proliferation|upregulation of satellite cell proliferation|activation of satellite cell proliferation|up-regulation of satellite cell proliferation mr 2014-02-24T16:09:56Z biological_process owl:Class GO:0014858 biolink:NamedThing positive regulation of skeletal muscle cell proliferation Any process that activates or increases the frequency, rate or extent of skeletal muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071568 biolink:NamedThing UFM1 transferase activity Catalysis of the transfer of UFM1 from one protein to another via the reaction X-UFM1 + Y --> Y-UFM1 + X, where both X-UFM1 and Y-UFM1 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:10:11Z molecular_function owl:Class GO:0042201 biolink:NamedThing N-cyclopropylmelamine metabolic process The chemical reactions and pathways involving N-cyclopropylmelamine, a triazine compound commonly used as an insect growth regulator insecticide. tmpzr1t_l9r_go_relaxed.owl N-cyclopropylmelamine metabolism|cyromazine metabolic process|cyromazine metabolism biological_process owl:Class GO:0045017 biolink:NamedThing glycerolipid biosynthetic process The chemical reactions and pathways resulting in the formation of glycerolipids, any lipid with a glycerol backbone. tmpzr1t_l9r_go_relaxed.owl glycerolipid anabolism|glycerolipid synthesis|glycerolipid formation|glycerolipid biosynthesis biological_process owl:Class GO:0052740 biolink:NamedThing 1-acyl-2-lysophosphatidylserine acylhydrolase activity Catalysis of the reaction: 1-acyl-2-lysophosphatidylserine + H2O = sn-glycerol-phosphoserine + a carboxylate. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine-specific phospholipase A1 activity EC:3.1.1.32 molecular_function owl:Class GO:0003397 biolink:NamedThing neuron migration involved in amphid sensory organ dendrite retrograde extension The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension of a dendrite of a neuron in the amphid sensory organ. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:52:18Z biological_process owl:Class GO:0003395 biolink:NamedThing neuron migration involved in dendrite retrograde extension The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension of a dendrite. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:44:24Z biological_process owl:Class GO:1902710 biolink:NamedThing GABA receptor complex A protein complex which is capable of GABA receptor activity. Upon binding of gamma-aminobutyric acid (GABA) it transmits the signal from one side of the membrane to the other to initiate a change in cell activity. Major inhibitory receptor in vertebrate brain. Also found in other vertebrate tissues, invertebrates and possibly in plants. Effective benzodiazepine receptor. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid receptor complex bhm 2014-02-20T16:07:48Z cellular_component owl:Class GO:2000022 biolink:NamedThing regulation of jasmonic acid mediated signaling pathway Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of jasmonic acid mediated signalling pathway tb 2010-08-05T11:24:11Z biological_process owl:Class GO:0002008 biolink:NamedThing excitation of vasomotor center by chemoreceptor signaling The process in which the molecular signal from the carotid and aortic bodies is relayed to the vasomotor center, causing it to signal an increase arterial pressure. tmpzr1t_l9r_go_relaxed.owl excitation of vasomotor center by chemoreceptor signalling biological_process owl:Class GO:0046934 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate 3-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase, class I, catalyst activity|type I phosphoinositide 3-kinase activity|ATP:1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 3-phosphotransferase activity|phosphatidylinositol 3-kinase activity, class II|phosphatidylinositol 3-kinase activity, class I Reactome:R-HSA-1250370|Reactome:R-HSA-5654709|Reactome:R-HSA-9672162|Reactome:R-HSA-5654701|Reactome:R-HSA-1306979|Reactome:R-HSA-186800|Reactome:R-HSA-9672177|Reactome:R-HSA-9603445|Reactome:R-HSA-5654705|Reactome:R-HSA-202365|Reactome:R-HSA-2029271|Reactome:R-HSA-392300|Reactome:R-HSA-5654692|Reactome:R-HSA-1839091|Reactome:R-HSA-1676048|Reactome:R-HSA-198266|Reactome:R-HSA-5654697|Reactome:R-HSA-5654714|Reactome:R-HSA-1226014|Reactome:R-HSA-9021627|Reactome:R-HSA-5655290|Reactome:R-HSA-5637801|Reactome:R-HSA-5655235|Reactome:R-HSA-5654717|Reactome:R-HSA-8852019|MetaCyc:2.7.1.153-RXN|Reactome:R-HSA-2424480|Reactome:R-HSA-437162|Reactome:R-HSA-9665407|Reactome:R-HSA-9664940|Reactome:R-HSA-389158|Reactome:R-HSA-2394007|Reactome:R-HSA-2316434|Reactome:R-HSA-5654690|Reactome:R-HSA-5218819|Reactome:R-HSA-1839107|Reactome:R-HSA-9664664|Reactome:R-HSA-2076220|Reactome:R-HSA-1306957|Reactome:R-HSA-177939|Reactome:R-HSA-5655323|Reactome:R-HSA-5655289|EC:2.7.1.153|KEGG_REACTION:R04545|Reactome:R-HSA-1250462|Reactome:R-HSA-8853323|RHEA:21292|Reactome:R-HSA-2730870 molecular_function owl:Class GO:0120207 biolink:NamedThing endocytosis, site selection The process of selecting and or marking the position where endocytosis will occur. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-15T21:25:49Z biological_process owl:Class GO:0016419 biolink:NamedThing S-malonyltransferase activity Catalysis of the transfer of a malonyl group to a sulfur atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.39 molecular_function owl:Class GO:0009668 biolink:NamedThing plastid membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of either of the lipid bilayers surrounding a plastid. tmpzr1t_l9r_go_relaxed.owl plastid membrane organisation|plastid membrane organization and biogenesis biological_process owl:Class GO:0008939 biolink:NamedThing nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity Catalysis of the reaction: 5,6-dimethylbenzimidazole + nicotinate D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate. tmpzr1t_l9r_go_relaxed.owl CobT|N1-alpha-phosphoribosyltransferase activity|nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole phosphoribosyltransferase activity|nicotinate ribonucleotide:benzimidazole (adenine) phosphoribosyltransferase activity|nicotinate-nucleotide:dimethylbenzimidazole phospho-D-ribosyltransferase activity|nicotinate mononucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|nicotinate-nucleotide:5,6-dimethylbenzimidazole phospho-D-ribosyltransferase activity|N(1)-alpha-phosphoribosyltransferase activity EC:2.4.2.21|KEGG_REACTION:R04148|RHEA:11196|MetaCyc:DMBPPRIBOSYLTRANS-RXN molecular_function owl:Class GO:0048304 biolink:NamedThing positive regulation of isotype switching to IgG isotypes Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes. tmpzr1t_l9r_go_relaxed.owl activation of isotype switching to IgG isotypes|positive regulation of isotype switch recombination to IgG isotypes|positive regulation of class switch recombination to IgG isotypes|up-regulation of isotype switching to IgG isotypes|up regulation of isotype switching to IgG isotypes|stimulation of isotype switching to IgG isotypes|positive regulation of class switching to IgG isotypes|upregulation of isotype switching to IgG isotypes biological_process owl:Class GO:2001032 biolink:NamedThing regulation of double-strand break repair via nonhomologous end joining Any process that modulates the frequency, rate or extent of double-strand break repair via nonhomologous end joining. tmpzr1t_l9r_go_relaxed.owl regulation of NHEJ yaf 2011-08-24T09:25:39Z biological_process owl:Class GO:1904826 biolink:NamedThing regulation of hydrogen sulfide biosynthetic process Any process that modulates the frequency, rate or extent of hydrogen sulfide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen sulphide biosynthetic process|regulation of hydrogen sulfide anabolism|regulation of hydrogen sulfide formation|regulation of hydrogen sulfide synthesis|regulation of hydrogen sulfide biosynthesis|regulation of hydrogen sulphide biosynthesis rph 2015-11-24T10:15:26Z biological_process owl:Class GO:0072249 biolink:NamedThing metanephric glomerular visceral epithelial cell development The process whose specific outcome is the progression of a metanephric glomerular visceral epithelial cell over time, from its formation to the mature structure. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric podocyte development mah 2010-03-19T03:46:26Z biological_process owl:Class GO:0005992 biolink:NamedThing trehalose biosynthetic process The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. tmpzr1t_l9r_go_relaxed.owl mykose biosynthetic process|mykose biosynthesis|trehalose biosynthesis|trehalose synthesis|mycose biosynthetic process|trehalose anabolism|trehalose formation|mycose biosynthesis MetaCyc:TREHALOSESYN-PWY|MetaCyc:PWY-881|MetaCyc:TRESYN-PWY biological_process owl:Class GO:2001225 biolink:NamedThing regulation of chloride transport Any process that modulates the frequency, rate or extent of chloride transport. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-18T05:45:56Z biological_process owl:Class GO:0150103 biolink:NamedThing reactive gliosis A neuroinflammatory response, occurring over several days, during which glial cells undergo nonspecific reactive changes in response to damage to the central nervous system (CNS); typically involves the proliferation or hypertrophy of different types of glial cells. tmpzr1t_l9r_go_relaxed.owl gliosis bc 2019-05-21T12:37:31Z biological_process owl:Class GO:0045136 biolink:NamedThing development of secondary sexual characteristics The process whose specific outcome is the progression of the secondary sexual characteristics over time, from their formation to the mature structures. In humans, these include growth of axillary, chest, and pubic hair, voice changes, testicular/penile enlargement, breast development and menstrual periods. Development occurs in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048252 biolink:NamedThing lauric acid metabolic process The chemical reactions and pathways involving lauric acid, a fatty acid with the formula CH3(CH2)10COOH. Derived from vegetable sources. tmpzr1t_l9r_go_relaxed.owl n-dodecanoic acid metabolism|lauric acid metabolism|n-dodecanoic acid metabolic process biological_process owl:Class GO:0040032 biolink:NamedThing post-embryonic body morphogenesis The process in which the anatomical structures of the post-embryonic soma are generated and organized. tmpzr1t_l9r_go_relaxed.owl Note that this term was 'body morphogenesis (sensu Nematoda)'. biological_process owl:Class GO:0010171 biolink:NamedThing body morphogenesis The process in which the anatomical structures of the soma are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032766 biolink:NamedThing NHE3/E3KARP/ACTN4 complex A heterotrimeric protein complex formed by the association of NHE3, E3KARP and alpha-actinin upon an increase in calcium ion concentration; found in clusters localized on plasma membrane and in intracellular compartments. tmpzr1t_l9r_go_relaxed.owl NHE3/E3KARP/alpha-actinin complex cellular_component owl:Class GO:0009672 biolink:NamedThing auxin:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: auxin(out) + H+(out) = auxin(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl auxin:hydrogen symporter activity molecular_function owl:Class GO:0080161 biolink:NamedThing auxin transmembrane transporter activity Enables the transfer of auxins from one side of a membrane to the other. Auxins are plant hormones that regulate aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T03:37:43Z molecular_function owl:Class GO:0106388 biolink:NamedThing 18S rRNA aminocarboxypropyltransferase activity Catalysis of the reaction: N1-methylpseudouridine in 18S rRNA + S-adenosyl-L-methionine = H+ + N1-methyl-N3-[(3S)-3-amino-3-carboxypropyl]pseudouridine in 18S rRNA + S-methyl-5'-thioadenosine. tmpzr1t_l9r_go_relaxed.owl RHEA:63296 hjd 2021-07-13T14:01:28Z molecular_function owl:Class GO:2000426 biolink:NamedThing negative regulation of apoptotic cell clearance Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl negative regulation of efferocytosis|negative regulation of programmed cell clearance|negative regulation of apoptotic cell removal bf 2011-02-25T11:50:39Z biological_process owl:Class GO:2000425 biolink:NamedThing regulation of apoptotic cell clearance Any process that modulates the frequency, rate or extent of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl regulation of programmed cell clearance|regulation of efferocytosis|regulation of apoptotic cell removal bf 2011-02-25T11:50:11Z biological_process owl:Class GO:0072717 biolink:NamedThing cellular response to actinomycin D Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-26T02:06:55Z biological_process owl:Class GO:0043940 biolink:NamedThing regulation of sexual sporulation resulting in formation of a cellular spore Any process that modulates the frequency, rate or extent of the formation of cellular spores derived from the products of meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106214 biolink:NamedThing regulation of vesicle fusion with Golgi apparatus Any process that modulates the frequency, rate or extent of vesicle fusion with Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl hjd 2019-06-27T15:12:22Z biological_process owl:Class GO:0070328 biolink:NamedThing triglyceride homeostasis Any process involved in the maintenance of an internal steady state of triglyceride within an organism or cell. tmpzr1t_l9r_go_relaxed.owl triacylglycerol homeostasis biological_process owl:Class GO:0055090 biolink:NamedThing acylglycerol homeostasis Any process involved in the maintenance of an internal steady state of acylglycerol within an organism or cell. tmpzr1t_l9r_go_relaxed.owl glyceride homeostasis biological_process owl:Class GO:0004518 biolink:NamedThing nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids. tmpzr1t_l9r_go_relaxed.owl Note that 'tRNA nucleotidyltransferase activity ; GO:0009022', also known as 'ribonuclease PH', and 'DNA-(apurinic or apyrimidinic site) lyase activity ; GO:0003906' do not have parentage in the 'nuclease activity' branch of the ontology because both GO and the Enzyme Commission define nuclease activity as a type of hydrolysis. molecular_function owl:Class GO:0005639 biolink:NamedThing integral component of nuclear inner membrane The component of the nuclear inner membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to nuclear inner membrane cellular_component owl:Class GO:0015169 biolink:NamedThing glycerol-3-phosphate transmembrane transporter activity Enables the transfer of glycerol-3-phosphate from one side of a membrane to the other. Glycerol-3-phosphate is a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009669 biolink:NamedThing sucrose:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + monovalent cation(out) = sucrose(in) + monovalent cation(in). tmpzr1t_l9r_go_relaxed.owl sucrose:monovalent cation symporter activity|sucrose permease activity molecular_function owl:Class GO:0106318 biolink:NamedThing methane monooxygenase NADPH activity Catalysis of the reaction: methane + NADPH + H+ + O2 = methanol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.25|RHEA:13641 hjd 2020-09-23T15:12:49Z molecular_function owl:Class GO:1901088 biolink:NamedThing benzylpenicillin biosynthetic process The chemical reactions and pathways resulting in the formation of benzylpenicillin. tmpzr1t_l9r_go_relaxed.owl penicillin G biosynthesis|penicillin G formation|benzylpenicillin anabolism|benzylpenicillin synthesis|benzylpenicillin biosynthesis|penicillin G anabolism|penicillin G synthesis|benzylpenicillin formation yaf 2012-07-05T10:29:07Z biological_process owl:Class GO:1901086 biolink:NamedThing benzylpenicillin metabolic process The chemical reactions and pathways involving benzylpenicillin. tmpzr1t_l9r_go_relaxed.owl penicillin G metabolism|benzylpenicillin metabolism yaf 2012-07-05T10:28:33Z biological_process owl:Class GO:1900580 biolink:NamedThing (17Z)-protosta-17(20),24-dien-3beta-ol catabolic process The chemical reactions and pathways resulting in the breakdown of (17Z)-protosta-17(20),24-dien-3beta-ol. tmpzr1t_l9r_go_relaxed.owl (17Z)-protosta-17(20),24-dien-3beta-ol breakdown|(17Z)-protosta-17(20),24-dien-3beta-ol catabolism|(17Z)-protosta-17(20),24-dien-3beta-ol degradation di 2012-05-15T06:47:30Z biological_process owl:Class GO:1900579 biolink:NamedThing (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process The chemical reactions and pathways involving (17Z)-protosta-17(20),24-dien-3beta-ol. tmpzr1t_l9r_go_relaxed.owl (17Z)-protosta-17(20),24-dien-3beta-ol metabolism di 2012-05-15T06:47:07Z biological_process owl:Class GO:0048829 biolink:NamedThing root cap development The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002844 biolink:NamedThing negative regulation of tolerance induction to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl downregulation of tolerance induction to tumor cell|negative regulation of tolerance induction to tumour cell|inhibition of tolerance induction to tumor cell|down regulation of tolerance induction to tumor cell|down-regulation of tolerance induction to tumor cell biological_process owl:Class GO:0060015 biolink:NamedThing granulosa cell fate commitment The cell fate commitment of precursor cells that will become granulosa cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044597 biolink:NamedThing daunorubicin metabolic process The chemical reactions and pathways involving daunorubicin, a chemotherapeutic of the anthracycline family that is given as a treatment for some types of cancer. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-01T03:09:51Z biological_process owl:Class GO:0102571 biolink:NamedThing [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine/L-threonine O-N-acetyl-alpha-D-glucosaminase activity Catalysis of the reaction: H2O + an N-acetyl-alpha-D-glucosaminyl-[glycoprotein] <=> N-acetyl-alpha-D-glucosaminide + a [glycoprotein]-(L-serine/L-threonine). tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.169|MetaCyc:RXN-15215 molecular_function owl:Class GO:0102006 biolink:NamedThing 4-methyl-2-oxopentanoate dehydrogenase activity Catalysis of the reaction: 4-methyl-2-oxopentanoate + coenzyme A(4-) + NAD(1-) <=> isovaleryl-CoA(4-) + carbon dioxide + NADH(2-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN|RHEA:25177 molecular_function owl:Class GO:0036117 biolink:NamedThing hyaluranon cable A cable structure, surrounding some cell types (e.g. proximal or bronchial tubular epithelial cells), and composed of hyaluranon (HA), a ubiquitous connective tissue glycosaminoglycan. tmpzr1t_l9r_go_relaxed.owl HA cable bf 2012-02-16T10:53:37Z cellular_component owl:Class GO:0061234 biolink:NamedThing mesonephric glomerulus morphogenesis The process in which the anatomical structures of the mesonephric glomerulus are generated and organized. The mesonephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:53:35Z biological_process owl:Class GO:0006782 biolink:NamedThing protoporphyrinogen IX biosynthetic process The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen IX formation|protoporphyrinogen IX biosynthesis|protoporphyrinogen IX anabolism|protoporphyrinogen IX synthesis biological_process owl:Class GO:0042852 biolink:NamedThing L-alanine biosynthetic process The chemical reactions and pathways resulting in the formation of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-alanine biosynthesis|L-alanine anabolism|L-alanine formation|L-alanine synthesis biological_process owl:Class GO:0032330 biolink:NamedThing regulation of chondrocyte differentiation Any process that modulates the frequency, rate or extent of chondrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044228 biolink:NamedThing host cell surface The external part of the host cell wall and/or host plasma membrane. tmpzr1t_l9r_go_relaxed.owl jl 2009-12-03T01:49:45Z cellular_component owl:Class GO:0051691 biolink:NamedThing cellular oligosaccharide metabolic process The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular oligosaccharide metabolism biological_process owl:Class GO:0030408 biolink:NamedThing glycine formimidoyltransferase activity Catalysis of the reaction: 5-formimidoyltetrahydrofolate + glycine = (6S)-5,6,7,8-tetrahydrofolate + N-formimidoylglycine. tmpzr1t_l9r_go_relaxed.owl formiminotransferase activity|formiminoglycine formiminotransferase activity|glycine formiminotransferase activity|FIG formiminotransferase activity|formimidoyltransferase activity|5-formimidoyltetrahydrofolate:glycine N-formimidoyltransferase activity RHEA:24288|KEGG_REACTION:R02729|EC:2.1.2.4|MetaCyc:GLYCINE-FORMIMINOTRANSFERASE-RXN molecular_function owl:Class GO:0071352 biolink:NamedThing cellular response to interleukin-2 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-2 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-2 mah 2009-12-11T02:50:48Z biological_process owl:Class GO:0051328 biolink:NamedThing meiotic interphase The cell cycle phase which begins after cytokinesis and ends when meiotic prophase begins. Meiotic cells have an interphase after each meiotic division, but only interphase I involves replication of the cell's DNA. tmpzr1t_l9r_go_relaxed.owl interphase of meiotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0051897 biolink:NamedThing positive regulation of protein kinase B signaling Any process that activates or increases the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B. tmpzr1t_l9r_go_relaxed.owl upregulation of protein kinase B signaling cascade|up-regulation of protein kinase B signaling cascade|stimulation of protein kinase B signaling cascade|positive regulation of AKT signaling cascade|activation of protein kinase B signaling cascade|positive regulation of PKB signaling cascade|up regulation of protein kinase B signaling cascade|positive regulation of AKT signalling cascade|positive regulation of protein kinase B signaling cascade|positive regulation of PKB signalling cascade|positive regulation of protein kinase B signalling cascade biological_process owl:Class GO:0004864 biolink:NamedThing protein phosphatase inhibitor activity Binds to and stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins. tmpzr1t_l9r_go_relaxed.owl protein phosphatase 2 inhibitor activity|phosphoprotein phosphatase inhibitor activity|protein phosphatase type 2A inhibitor activity rb 2015-03-03T23:57:25Z GO:1990681 molecular_function owl:Class GO:0044325 biolink:NamedThing transmembrane transporter binding Binding to a transmembrane transporter, a protein or protein complex that enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl ion channel binding https://github.com/geneontology/go-ontology/issues/21331 jl 2010-08-04T12:52:59Z molecular_function owl:Class GO:0004455 biolink:NamedThing ketol-acid reductoisomerase activity Catalysis of the reaction: (R)-2,3-dihydroxy-3-methylbutanoate + NADP+ = (S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl reductoisomerase activity|dihydroxyisovalerate (isomerizing) dehydrogenase activity|alpha-keto-beta-hydroxylacyl reductoisomerase activity|isomeroreductase activity|acetolactate reductoisomerase activity|ketol acid reductoisomerase activity|(R)-2,3-dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing)|2-hydroxy-3-keto acid reductoisomerase activity|acetohydroxy acid reductoisomerase activity|dihydroxyisovalerate dehydrogenase (isomerizing) activity|acetohydroxy acid isomeroreductase activity MetaCyc:ACETOLACTREDUCTOISOM-RXN|RHEA:22068|EC:1.1.1.86 molecular_function owl:Class GO:0015620 biolink:NamedThing ferric-enterobactin transmembrane transporter activity Enables the transfer of ferric-enterobactin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902426 biolink:NamedThing deactivation of mitotic spindle assembly checkpoint A positive regulation of the mitotic metaphase/anaphase transition that results from deactivation of the mitotic spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl down regulation of Mad2-dependent checkpoint|downregulation of Mad2-dependent checkpoint|mitotic spindle assembly deactivation|inhibition of mitotic spindle assembly checkpoint|down-regulation of mitotic spindle assembly checkpoint|inhibition of mitotic cell cycle spindle assembly checkpoint|down-regulation of mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic spindle assembly checkpoint|down regulation of mitotic cell cycle spindle assembly checkpoint|downregulation of mitotic spindle assembly checkpoint|down regulation of mitotic spindle assembly checkpoint|negative regulation of mitotic cell cycle spindle assembly checkpoint|mitotic spindle assembly checkpoint silencing|inhibition of Mad2-dependent checkpoint|negative regulation of Mad2-dependent checkpoint|downregulation of mitotic cell cycle spindle assembly checkpoint|down-regulation of Mad2-dependent checkpoint A mitotic spindle assembly checkpoint is either activated or switched off; no other means of reducing the frequency, rate or extent of this process are currently known. dph 2013-09-20T18:42:07Z biological_process owl:Class GO:0006636 biolink:NamedThing unsaturated fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. tmpzr1t_l9r_go_relaxed.owl polyunsaturated fatty acid biosynthesis|unsaturated fatty acid synthesis|unsaturated fatty acid anabolism|unsaturated fatty acid biosynthesis|unsaturated fatty acid formation|fatty acid desaturation MetaCyc:PWY-782|MetaCyc:PWY-762 biological_process owl:Class GO:0018142 biolink:NamedThing protein-DNA covalent cross-linking The formation of a covalent cross-link between DNA and a protein. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking biological_process owl:Class GO:0018143 biolink:NamedThing nucleic acid-protein covalent cross-linking The formation of a covalent cross-link between a nucleic acid and a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075269 biolink:NamedThing positive regulation of aecium development Any process that activates, maintains or increases the frequency, rate or extent of aecium development, a process in which a cuplike structure containing chains of aeciospores is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102727 biolink:NamedThing 3beta-hydroxysteroid dehydrogenase activity Catalysis of the reaction: campest-4-en-3beta-ol + NAD = campest-4-en-3-one + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-710 molecular_function owl:Class GO:0044072 biolink:NamedThing negative regulation by symbiont of host cell cycle The process in which a symbiont organism stops, prevents or reduces the rate or extent of its host's progression through its cell cycle via direct interactions with the host cell macromolecular machinery. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021825 biolink:NamedThing substrate-dependent cerebral cortex tangential migration The process where neuronal precursors migrate tangentially in the cerebral cortex, primarily guided through physical cell-cell interactions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021800 biolink:NamedThing cerebral cortex tangential migration The migration of cells in the cerebral cortex in which cells move orthogonally to the direction of radial migration and do not use radial glial cell processes as substrates for migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000323 biolink:NamedThing lytic vacuole A vacuole that is maintained at an acidic pH and which contains degradative enzymes, including a wide variety of acid hydrolases. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016208 biolink:NamedThing AMP binding Binding to AMP, adenosine monophosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071681 biolink:NamedThing cellular response to indole-3-methanol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to indole-3-carbinol mah 2010-02-18T04:05:29Z biological_process owl:Class GO:0060086 biolink:NamedThing circadian temperature homeostasis Any homeostatic process in which an organism modulates its internal body temperature at different values with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl circadian regulation of body temperature|circadian thermoregulation biological_process owl:Class GO:1990319 biolink:NamedThing collagen type XX trimer A collagen homotrimer of alpha1(XX) chains. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T16:31:21Z cellular_component owl:Class GO:0047865 biolink:NamedThing dimethylglycine dehydrogenase activity Catalysis of the reaction: N,N-dimethylglycine + electron-transfer flavoprotein + H2O = sarcosine + formaldehyde + reduced electron-transfer flavoprotein. tmpzr1t_l9r_go_relaxed.owl N,N-dimethylglycine:acceptor oxidoreductase (demethylating)|N,N-dimethylglycine:(acceptor) oxidoreductase (demethylating)|N,N-dimethylglycine oxidase activity EC:1.5.8.4|Reactome:R-HSA-6797653|RHEA:52856|MetaCyc:DIMETHYLGLYCINE-DEHYDROGENASE-RXN|KEGG_REACTION:R01565 Note that this was EC:1.5.99.2. molecular_function owl:Class GO:0035864 biolink:NamedThing response to potassium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to K+ ion|response to potassium bf 2011-05-25T02:58:45Z biological_process owl:Class GO:1901821 biolink:NamedThing alpha-zeacarotene biosynthetic process The chemical reactions and pathways resulting in the formation of alpha-zeacarotene. tmpzr1t_l9r_go_relaxed.owl alpha-zeacarotene synthesis|alpha-zeacarotene biosynthesis|alpha-zeacarotene formation|alpha-zeacarotene anabolism yaf 2013-01-22T10:51:14Z biological_process owl:Class GO:0036468 biolink:NamedThing L-dopa decarboxylase activity Catalysis of the reaction: L-dopa + H+ = CO2 + dopamine. tmpzr1t_l9r_go_relaxed.owl 4-dihydroxyl-L-phenylalanine decarboxylase activity|DDC activity|DOPA decarboxylase activity RHEA:12272 bf 2014-07-21T09:22:24Z molecular_function owl:Class GO:0004058 biolink:NamedThing aromatic-L-amino-acid decarboxylase activity Catalysis of the reaction: L-amino acid + H+ = R-H + CO2. tmpzr1t_l9r_go_relaxed.owl DOPA decarboxylase activity|aromatic-L-amino-acid carboxy-lyase activity|aromatic-L-amino-acid carboxy-lyase (tryptamine-forming)|5-hydroxytryptophan decarboxylase activity|tryptophan decarboxylase activity|hydroxytryptophan decarboxylase activity|aromatic amino acid decarboxylase activity|L-DOPA decarboxylase activity Reactome:R-HSA-209924|Reactome:R-HSA-209859|EC:4.1.1.28|MetaCyc:AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN GO:0016400 molecular_function owl:Class GO:0043542 biolink:NamedThing endothelial cell migration The orderly movement of an endothelial cell into the extracellular matrix to form an endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120243 biolink:NamedThing 2-iminopropanoate deaminase activity Catalysis of the reaction: 2-iminopropanoate + H2O = NH4(+) + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2-iminobutanoate/2-iminopropanoate deaminase https://github.com/geneontology/go-ontology/issues/19832 MetaCyc:RXN-15127|RHEA:40671|KEGG_REACTION:R11099 krc 2020-07-29T19:41:18Z molecular_function owl:Class GO:0120241 biolink:NamedThing 2-iminobutanoate/2-iminopropanoate deaminase Catalyzes the hydrolytic deamination of imine intermediates formed by several types of pyridoxal-5'-phosphate-dependent dehydratases, such as EC 4.3.1.19 and EC 4.3.1.17. tmpzr1t_l9r_go_relaxed.owl 2-iminopropanoate deaminase|2-iminobutanoate deaminase|imine intermediate deaminase activity|enamine/imine deaminase https://github.com/geneontology/go-ontology/issues/19832 EC:3.5.99.10 This enzyme, which has been found in all species and tissues examined, catalyzes the hydrolytic deamination of imine intermediates formed by several types of pyridoxal-5'-phosphate-dependent dehydratases, such as EC 4.3.1.19 and EC 4.3.1.17. The reactions, which can occur spontaneously, are accelerated to minimize the cellular damage that could be caused by these reactive intermediates (from EC:3.5.99.10). krc 2020-07-29T17:28:19Z molecular_function owl:Class GO:1990943 biolink:NamedThing mating type region replication fork barrier binding Binding to the replication fork barrier found in the mating type region of fission yeast. tmpzr1t_l9r_go_relaxed.owl RTS1 barrier binding|RTS1 element binding mah 2016-04-06T16:08:43Z molecular_function owl:Class GO:0097004 biolink:NamedThing adipokinetic hormone binding Binding to an adipokinetic hormone. Adipokinetic hormones (AKHs) are peptide hormones that are involved in the mobilization of sugar and lipids from the insect fat body during energy-requiring activities such as flight and locomotion. They also contribute to hemolymph sugar homeostasis. tmpzr1t_l9r_go_relaxed.owl AKH binding pr 2011-03-14T12:50:02Z molecular_function owl:Class GO:0070440 biolink:NamedThing Mad-Max-mSin3B complex A transcriptional repressor complex that contains a heterodimer of the bHLH-ZIP proteins Mad and Max, plus mSin3B, a homolog of the yeast Sin3p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035861 biolink:NamedThing site of double-strand break A region of a chromosome at which a DNA double-strand break has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix. tmpzr1t_l9r_go_relaxed.owl site of DSB|DNA damage focus|ionizing radiation-induced foci|IRIF|DNA damage foci bf 2011-05-17T03:04:42Z cellular_component owl:Class GO:0090734 biolink:NamedThing site of DNA damage A region of a chromosome at which DNA damage has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix. tmpzr1t_l9r_go_relaxed.owl Wikipedia:DNA_repair tb 2017-02-03T17:24:08Z cellular_component owl:Class GO:0019341 biolink:NamedThing dibenzo-p-dioxin catabolic process The chemical reactions and pathways resulting in the breakdown of dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. tmpzr1t_l9r_go_relaxed.owl dibenzo-p-dioxin degradation|dibenzo-p-dioxin breakdown|dibenzo-p-dioxin catabolism MetaCyc:P661-PWY biological_process owl:Class GO:1900366 biolink:NamedThing negative regulation of defense response to insect Any process that stops, prevents or reduces the frequency, rate or extent of defense response to insect. tmpzr1t_l9r_go_relaxed.owl down regulation of physiological defense response to insect|inhibition of defense response to insect|negative regulation of physiological defense response to insect|down regulation of defense response to insect|downregulation of physiological defense response to insect|down-regulation of physiological defense response to insect|downregulation of defense response to insect|susceptibility to insect|down-regulation of defense response to insect|inhibition of physiological defense response to insect dhl 2012-04-12T04:44:00Z biological_process owl:Class GO:1903768 biolink:NamedThing taste receptor complex A protein complex which is capable of taste receptor activity. tmpzr1t_l9r_go_relaxed.owl rl 2014-12-22T16:53:45Z cellular_component owl:Class GO:0031056 biolink:NamedThing regulation of histone modification Any process that modulates the frequency, rate or extent of the covalent alteration of a histone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098752 biolink:NamedThing integral component of the cytoplasmic side of the plasma membrane The component of the plasma membrane consisting of the gene products that penetrate only the cytoplasmic side of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019238 biolink:NamedThing cyclohydrolase activity Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2, in a reaction that involves the opening of a ring. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060742 biolink:NamedThing epithelial cell differentiation involved in prostate gland development The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell of the prostate gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-16T09:32:34Z biological_process owl:Class GO:0043699 biolink:NamedThing leucosome A tissue-specific, membrane-bounded cytoplasmic organelle within which uric acid and/or purines crystalize in reflective stacks. Leucosomes are synthesized in leucophore cells and have a whitish cast. tmpzr1t_l9r_go_relaxed.owl refractosome cellular_component owl:Class GO:0048770 biolink:NamedThing pigment granule A small, subcellular membrane-bounded vesicle containing pigment and/or pigment precursor molecules. Pigment granule biogenesis is poorly understood, as pigment granules are derived from multiple sources including the endoplasmic reticulum, coated vesicles, lysosomes, and endosomes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0039688 biolink:NamedThing viral double stranded DNA replication via reverse transcription A DNA replication process that uses viral RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands. tmpzr1t_l9r_go_relaxed.owl RNA-dependent viral DNA replication|viral RNA-dependent DNA replication|dsDNA replication via RNA intermediate VZ:1938 bf 2013-10-17T15:00:08Z biological_process owl:Class GO:0039693 biolink:NamedThing viral DNA genome replication The replication of a viral DNA genome. tmpzr1t_l9r_go_relaxed.owl viral DNA replication|viral DNA-dependent DNA replication|DNA-dependent viral DNA replication bf 2013-10-23T15:22:31Z GO:0039681 biological_process owl:Class GO:0099061 biolink:NamedThing integral component of postsynaptic density membrane The component of the postsynaptic density membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099060 biolink:NamedThing integral component of postsynaptic specialization membrane The component of the postsynaptic specialization membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018601 biolink:NamedThing 4-nitrophenol 2-monooxygenase activity Catalysis of the reaction: 4-nitrophenol + H(+) + NADH + O(2) = 4-nitrocatechol + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 4-nitrophenol hydroxylase activity|4-nitrophenol,NADH:oxygen oxidoreductase (2-hydroxylating)|4-nitrophenol-2-hydroxylase activity UM-BBD_reactionID:r0230|KEGG_REACTION:R03023|MetaCyc:4-NITROPHENOL-2-MONOOXYGENASE-RXN|EC:1.14.13.29|RHEA:12568 molecular_function owl:Class GO:0070053 biolink:NamedThing thrombospondin receptor activity Combining with thrombospondin and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047594 biolink:NamedThing 6-beta-hydroxyhyoscyamine epoxidase activity Catalysis of the reaction: (6S)-6-hydroxyhyoscyamine + 2-oxoglutarate + O(2) = CO(2) + H(2)O + H(+) + scopolamine + succinate. tmpzr1t_l9r_go_relaxed.owl (6S)-6-hydroxyhyoscyamine,2-oxoglutarate oxidoreductase (epoxide-forming)|6beta-hydroxyhyoscyamine epoxidase activity|hydroxyhyoscyamine dioxygenase activity KEGG_REACTION:R03737|RHEA:12797|EC:1.14.20.13|MetaCyc:6-BETA-HYDROXYHYOSCYAMINE-EPOXIDASE-RXN molecular_function owl:Class GO:0072696 biolink:NamedThing positive regulation of DNA recombination at telomere Any process that activates or increases the frequency, rate or extent of DNA recombination within the telomere. tmpzr1t_l9r_go_relaxed.owl activation of telomeric recombination at telomere|up regulation of telomeric recombination at telomere|up-regulation of telomeric recombination at telomere|upregulation of telomeric recombination at telomere|positive regulation of telomeric recombination mah 2012-04-03T11:28:19Z biological_process owl:Class GO:0014737 biolink:NamedThing positive regulation of muscle atrophy Any process that activates or increases the frequency, rate or extent of muscle atrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014735 biolink:NamedThing regulation of muscle atrophy Any process that modulates the frequency, rate or extent of muscle atrophy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051154 biolink:NamedThing negative regulation of striated muscle cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of striated muscle cell differentiation|downregulation of striated muscle cell differentiation|down regulation of striated muscle cell differentiation|inhibition of striated muscle cell differentiation biological_process owl:Class GO:0120260 biolink:NamedThing ciliary microtubule quartet A set of four specialized microtubules that originates from the basal bodies and wraps around the ciliary pocket membrane, likely supporting its distinct flask shape. tmpzr1t_l9r_go_relaxed.owl ciliary MtQ https://github.com/geneontology/go-ontology/issues/20035 Note that cilia and eukaryotic flagella are deemed to be equivalent. In diplomonad species, such as Giardia, the axoneme may extend intracellularly up to 5um away from the plane of the plasma membrane. krc 2020-09-29T16:22:22Z cellular_component owl:Class GO:0004608 biolink:NamedThing phosphatidylethanolamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidylethanolamine = S-adenosyl-L-homocysteine + H(+) + phosphatidyl-N-methylethanolamine. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine methyltransferase activity|lipid methyl transferase activity|PEMT|S-adenosyl-L-methionine:phosphatidylethanolamine N-methyltransferase activity|phosphatidylethanolamine-N-methylase activity|LMTase activity|phosphatidylethanolamine-S-adenosylmethionine methyltransferase activity RHEA:11164|KEGG_REACTION:R02056|MetaCyc:2.1.1.17-RXN|Reactome:R-HSA-1483174|EC:2.1.1.17 molecular_function owl:Class GO:0120273 biolink:NamedThing ciliary centrin arm assembly The aggregation, arrangement and bonding together of a set of macromolecules to form a ciliary centrin arm, a rod-shaped protein complex containing Centrin4 protein that flanks the flagellum attachment zone (FAZ) filament and the quartet microtubules. tmpzr1t_l9r_go_relaxed.owl ciliary centrin arm formation https://github.com/geneontology/go-ontology/issues/20088 krc 2020-10-08T23:01:46Z biological_process owl:Class GO:1904081 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation Any positive regulation of transcription from RNA polymerase II promoter that is involved in neuron differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of global transcription from RNA polymerase II promoter involved in neuron differentiation|positive regulation of transcription from RNA polymerase II promoter, global involved in neuron differentiation|positive regulation of transcription from Pol II promoter involved in neuron differentiation|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in neuron differentiation|activation of global transcription from RNA polymerase II promoter involved in neuron differentiation|up regulation of transcription from RNA polymerase II promoter involved in neuron differentiation|upregulation of transcription from RNA polymerase II promoter involved in neuron differentiation|up-regulation of transcription from RNA polymerase II promoter involved in neuron differentiation|activation of transcription from RNA polymerase II promoter involved in neuron differentiation|stimulation of transcription from RNA polymerase II promoter involved in neuron differentiation|positive regulation of global transcription from Pol II promoter involved in neuron differentiation|up-regulation of global transcription from RNA polymerase II promoter involved in neuron differentiation|stimulation of global transcription from RNA polymerase II promoter involved in neuron differentiation|up regulation of global transcription from RNA polymerase II promoter involved in neuron differentiation kmv 2015-03-24T20:15:59Z biological_process owl:Class GO:0047381 biolink:NamedThing dodecanoyl-[acyl-carrier-protein] hydrolase activity Catalysis of the reaction: H2O + dodecanoyl-[acyl-carrier protein] = dodecanoate + [acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl dodecyl-[acyl-carrier protein] hydrolase activity|lauroyl-[acyl-carrier-protein] hydrolase activity|lauryl-[acyl-carrier protein] hydrolase activity|lauryl-acyl-carrier protein hydrolase activity|lauroyl-ACP hydrolase activity|dodecanoyl-acyl-carrier-protein hydrolase activity|dodecyl-acyl-carrier protein hydrolase|dodecanoyl-ACP hydrolase activity|dodecanoyl-[acyl-carrier protein] hydrolase activity|lauryl-acyl-carrier-protein hydrolase activity RHEA:30119|MetaCyc:3.1.2.21-RXN|EC:3.1.2.21 GO:0016294 molecular_function owl:Class GO:0004908 biolink:NamedThing interleukin-1 receptor activity Combining with interleukin-1 to initiate a change in cell activity. Interleukin-1 is produced mainly by activated macrophages and is involved in the inflammatory response. tmpzr1t_l9r_go_relaxed.owl IL-1R|IL-1 receptor activity Wikipedia:Interleukin-1_receptor molecular_function owl:Class GO:0072713 biolink:NamedThing cellular response to thiabendazole Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thiabendazole stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to TBZ mah 2012-04-11T04:24:19Z biological_process owl:Class GO:0061964 biolink:NamedThing negative regulation of entry into reproductive diapause Any process that stops, prevents, or reduces the frequency, rate or extent of the dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-05T15:04:33Z biological_process owl:Class GO:0046568 biolink:NamedThing 3-methylbutanol:NAD(P) oxidoreductase activity Catalysis of the reaction: 3-methylbutanol + NAD(P)+ = 3-methylbutanal + NAD(P)H + H+. 3-methylbutanal is also known as isovaleraldehyde. tmpzr1t_l9r_go_relaxed.owl 3-methylbutyraldehyde reductase activity|3-methylbutanal reductase [NAD(P)] activity|isoamyl alcohol oxidase activity MetaCyc:1.1.1.265-RXN|EC:1.1.1.265 molecular_function owl:Class GO:0018455 biolink:NamedThing alcohol dehydrogenase [NAD(P)+] activity Catalysis of the reaction: an alcohol + NAD(P)+ = an aldehyde + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl alcohol:NAD(P)+ oxidoreductase activity|aldehyde reductase (NADPH/NADH) RHEA:10736|EC:1.1.1.71|MetaCyc:ALCOHOL-DEHYDROGENASE-NADP+-RXN|UM-BBD_reactionID:r0172 molecular_function owl:Class GO:0032824 biolink:NamedThing negative regulation of natural killer cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of natural killer cell differentiation|negative regulation of NK cell differentiation|down regulation of natural killer cell differentiation|downregulation of natural killer cell differentiation|down-regulation of natural killer cell differentiation|negative regulation of natural killer cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0072133 biolink:NamedThing metanephric mesenchyme morphogenesis The process in which the anatomical structures of a metanephric mesenchymal tissue are generated and organized. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:20:14Z biological_process owl:Class GO:0080028 biolink:NamedThing nitrile biosynthetic process The chemical reactions and pathways resulting in the formation of a nitrile, an organic compound containing trivalent nitrogen attached to one carbon atom. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006183 biolink:NamedThing GTP biosynthetic process The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl GTP synthesis|GTP biosynthesis|GTP formation|GTP anabolism biological_process owl:Class GO:0009206 biolink:NamedThing purine ribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside triphosphate formation|purine ribonucleoside triphosphate anabolism|purine ribonucleoside triphosphate biosynthesis|purine ribonucleoside triphosphate synthesis biological_process owl:Class GO:0048494 biolink:NamedThing chromatophore ribulose bisphosphate carboxylase complex A complex, located in the chromatophore, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl RubisCO complex cellular_component owl:Class GO:2000838 biolink:NamedThing negative regulation of androstenedione secretion Any process that stops, prevents or reduces the frequency, rate or extent of androstenedione secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of androst-4-ene-3,17-dione secretion bf 2011-07-26T08:40:40Z biological_process owl:Class GO:0020005 biolink:NamedThing symbiont-containing vacuole membrane The lipid bilayer surrounding a symbiont-containing vacuole, derived from both the host and symbiont. tmpzr1t_l9r_go_relaxed.owl parasitophorous vacuolar membrane cellular_component owl:Class GO:1905096 biolink:NamedThing positive regulation of apolipoprotein A-I-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of apolipoprotein A-I-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of apolipoprotein A-I-mediated signalling pathway|upregulation of apolipoprotein A-I-mediated signaling pathway|up-regulation of apolipoprotein A-I-mediated signaling pathway|up-regulation of apolipoprotein A-I-mediated signalling pathway|activation of apolipoprotein A-I-mediated signaling pathway|up regulation of apolipoprotein A-I-mediated signaling pathway|up regulation of apolipoprotein A-I-mediated signalling pathway|positive regulation of apolipoprotein A-I-mediated signalling pathway|upregulation of apolipoprotein A-I-mediated signalling pathway bc 2016-03-31T11:34:07Z biological_process owl:Class GO:0070228 biolink:NamedThing regulation of lymphocyte apoptotic process Any process that modulates the occurrence or rate of lymphocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of lymphocyte apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). biological_process owl:Class GO:0018053 biolink:NamedThing C-terminal peptidyl-valine amidation The formation of a C-terminal peptidyl-valine amide by hydrolysis and oxidation of an interior Val-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0100 biological_process owl:Class GO:0015030 biolink:NamedThing Cajal body A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA. tmpzr1t_l9r_go_relaxed.owl Gemini of coiled bodies|coiled body|Gems Wikipedia:Cajal_body|NIF_Subcellular:nlx_subcell_090901 cellular_component owl:Class GO:0031232 biolink:NamedThing extrinsic component of external side of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its external surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to external leaflet of plasma membrane|extrinsic to external side of plasma membrane cellular_component owl:Class GO:0140447 biolink:NamedThing cytokine precursor processing The cleavage of a peptide bond in a precursor form of a cytokine, resulting in the mature (active) form of the cytokine. tmpzr1t_l9r_go_relaxed.owl interleukin maturation|interleukin processing https://github.com/geneontology/go-ontology/issues/19216 pg 2020-04-03T12:49:29Z biological_process owl:Class GO:0099186 biolink:NamedThing structural constituent of postsynapse The action of a molecule that contributes to the structural integrity of a postsynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T14:54:33Z molecular_function owl:Class GO:0036099 biolink:NamedThing female germ-line stem cell population maintenance The process by which an organism or tissue maintains a population of female germ-line stem cells. tmpzr1t_l9r_go_relaxed.owl bf 2012-01-26T01:58:10Z biological_process owl:Class GO:2001166 biolink:NamedThing regulation of histone H2B ubiquitination Any process that modulates the frequency, rate or extent of histone H2B ubiquitination. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:49:51Z biological_process owl:Class GO:0009233 biolink:NamedThing menaquinone metabolic process The chemical reactions and pathways involving any of the menaquinones, quinone-derived compounds synthesized by intestinal bacteria. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones have vitamin K activity and are known as vitamin K2. tmpzr1t_l9r_go_relaxed.owl multiprenylmenaquinone metabolic process|menatetrenone metabolic process|menaquinone metabolism|multiprenylmenaquinone metabolism|vitamin K2 metabolic process|vitamin K2 metabolism|menatetrenone metabolism biological_process owl:Class GO:0045068 biolink:NamedThing negative extrathymic T cell selection The process of elimination of extrathymically maturing T cells which react strongly with self-antigens. tmpzr1t_l9r_go_relaxed.owl negative extrathymic T lymphocyte selection|negative extrathymic T-cell selection|negative extrathymic T-lymphocyte selection biological_process owl:Class GO:0046919 biolink:NamedThing pyruvyltransferase activity Catalysis of the transfer of a pyruvyl (oxopropanoyl) group from one compound to another. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050058 biolink:NamedThing linoleate isomerase activity Catalysis of the reaction: linoleate = 9-cis,11-trans-octadecadienoate. tmpzr1t_l9r_go_relaxed.owl linoleic acid isomerase activity|linoleate delta12-cis-delta11-trans-isomerase activity KEGG_REACTION:R03627|MetaCyc:LINOLEATE-ISOMERASE-RXN|RHEA:17381|EC:5.2.1.5 molecular_function owl:Class GO:0036055 biolink:NamedThing protein-succinyllysine desuccinylase activity Catalysis of the reaction: H2O + N(6)-succinyl-L-lysyl-[protein] + NAD(+) = 2''-O-succinyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide. tmpzr1t_l9r_go_relaxed.owl peptidyl-succinyllysine desuccinylase activity|succinyllysine desuccinylase activity|succinyl lysine desuccinylase activity RHEA:47668 This reaction is the removal of a succinyl group (CO-CH2-CH2-CO) from a succinylated lysine residue of a protein or peptide. bf 2011-12-12T01:33:51Z molecular_function owl:Class GO:0038045 biolink:NamedThing large latent transforming growth factor-beta complex A protein complex containing latency-associated proteins (LAPs), mature disulphide-linked dimeric TGF-beta, and latent TGF-beta binding proteins (LTBPs). TGF-beta is mostly secreted as part of the large latent complex, and must be subsequently released from the LLC in order to bind to cell surface receptors. tmpzr1t_l9r_go_relaxed.owl large latent complex|LLC bf 2011-11-03T04:29:49Z cellular_component owl:Class GO:0099021 biolink:NamedThing cortical endoplasmic reticulum lumen The volume enclosed by the membranes of the cortical endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031005 biolink:NamedThing filamin binding Binding to a filamin, any member of a family of high molecular mass cytoskeletal proteins that crosslink actin filaments to form networks and stress fibers. Filamins contain an amino-terminal alpha-actinin-like actin binding domain, which is followed by a rod-domain composed of 4 to 24 100-residue repetitive segments including a carboxy-terminal dimerization domain. tmpzr1t_l9r_go_relaxed.owl filamin B binding|filamin C binding|beta-filamin binding|filamin-2 binding|filamin-B binding|alpha-filamin binding|ABPL binding|filamin-1 binding|filamin-A binding|gamma-filamin binding|ABP-278/276 binding|filamin-3 binding|filamin-C binding|ABP-280 binding|filamin A binding GO:0031006|GO:0031007|GO:0031008 molecular_function owl:Class GO:2001060 biolink:NamedThing D-glycero-D-manno-heptose 7-phosphate metabolic process The chemical reactions and pathways involving a D-glycero-D-manno-heptose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl D-glycero-D-manno-heptose 7-phosphate metabolism jl 2011-09-09T03:29:03Z biological_process owl:Class GO:2001311 biolink:NamedThing lysobisphosphatidic acid metabolic process The chemical reactions and pathways involving a lysobisphosphatidic acid. A lysobisphosphatidic acid is a lysophosphatidic acid having the unusual property of a phosphodiester moiety linked to positions sn-1 and sn1' of glycerol; and two additional fatty acids esterified to the glycerol head group. tmpzr1t_l9r_go_relaxed.owl bis(monoacylglycerol) hydrogen phosphate (BMP) metabolism|bis(monoacylglycerol) hydrogen phosphate (BMP) metabolic process|bis(monoacylglycerol) hydrogen phosphate metabolism|lysobisphosphatidic acid metabolism|bis(monoacylglycerol) hydrogen phosphate metabolic process|LBPA metabolic process|LBPA metabolism bf 2012-03-16T09:31:27Z biological_process owl:Class GO:1901290 biolink:NamedThing succinyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA anabolism|succinyl-CoA formation|succinyl-CoA biosynthesis|succinyl-CoA synthesis yaf 2012-08-17T16:13:57Z biological_process owl:Class GO:0070429 biolink:NamedThing negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway|negative regulation of NOD1 signaling pathway biological_process owl:Class GO:0007276 biolink:NamedThing gamete generation The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell. tmpzr1t_l9r_go_relaxed.owl gametogenesis GO:0009552 biological_process owl:Class GO:0071184 biolink:NamedThing protocadherin-alpha-v4-protocadherin-gamma-a1 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdhga1-Pcdha4 complex mah 2009-11-23T04:11:47Z cellular_component owl:Class GO:0006196 biolink:NamedThing AMP catabolic process The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate. tmpzr1t_l9r_go_relaxed.owl AMP degradation|AMP breakdown|AMP catabolism biological_process owl:Class GO:0009169 biolink:NamedThing purine ribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside monophosphate catabolism|purine ribonucleoside monophosphate degradation|purine ribonucleoside monophosphate breakdown biological_process owl:Class GO:0007099 biolink:NamedThing centriole replication The cell cycle process in which a daughter centriole is formed perpendicular to an existing centriole. An immature centriole contains a ninefold radially symmetric array of single microtubules; mature centrioles consist of a radial array of nine microtubule triplets, doublets, or singlets depending upon the species and cell type. Duplicated centrioles also become the ciliary basal body in cells that form cilia during G0. tmpzr1t_l9r_go_relaxed.owl microtubule basal body duplication|ciliary basal body duplication|centriole duplication GO:0032054 biological_process owl:Class GO:2000059 biolink:NamedThing negative regulation of ubiquitin-dependent protein catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein ubiquitylation during ubiquitin-dependent protein catabolism|negative regulation of protein ubiquitination during ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination during ubiquitin-dependent protein breakdown|negative regulation of protein degradation tagging activity|negative regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolism|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination during ubiquitin-dependent protein degradation|negative regulation of protein ubiquitination during ubiquitin-dependent protein catabolism|negative regulation of protein ubiquitylation during ubiquitin-dependent protein catabolic process jl 2010-08-20T01:23:56Z biological_process owl:Class GO:0033143 biolink:NamedThing regulation of intracellular steroid hormone receptor signaling pathway Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of steroid hormone receptor signaling pathway|regulation of steroid hormone receptor signalling pathway biological_process owl:Class GO:0009958 biolink:NamedThing positive gravitropism The orientation of plant parts towards gravity. tmpzr1t_l9r_go_relaxed.owl root gravitropism biological_process owl:Class GO:0009630 biolink:NamedThing gravitropism The orientation of plant parts under the stimulation of gravity. tmpzr1t_l9r_go_relaxed.owl geotropism Wikipedia:Gravitropism biological_process owl:Class GO:1903276 biolink:NamedThing regulation of sodium ion export across plasma membrane Any process that modulates the frequency, rate or extent of sodium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of sodium export|regulation of sodium ion export from cell|regulation of sodium ion export rl 2014-08-08T17:06:46Z GO:1903273 biological_process owl:Class GO:0098592 biolink:NamedThing cytoplasmic side of apical plasma membrane The side (leaflet) of the apical region of the plasma membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2014-03-06T12:07:32Z cellular_component owl:Class GO:0048282 biolink:NamedThing determinate inflorescence morphogenesis The process in which the anatomical structures of determinate inflorescences are generated and organized. A determinate inflorescence is one that can only produce a predetermined number of floral meristems. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071042 biolink:NamedThing nuclear polyadenylation-dependent mRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent mRNA catabolic process krc 2009-07-29T02:06:19Z biological_process owl:Class GO:0071047 biolink:NamedThing polyadenylation-dependent mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA. tmpzr1t_l9r_go_relaxed.owl poly(A)-dependent mRNA catabolic process https://github.com/geneontology/go-ontology/issues/20568 krc 2009-08-07T09:57:56Z biological_process owl:Class GO:0035333 biolink:NamedThing Notch receptor processing, ligand-dependent The proteolytic cleavages to the Notch protein that occur as a result of ligand binding. Ligand binding at the cell surface exposes an otherwise inaccessible cleavage site in the extracellular portion of Notch, which when cleaved releases a membrane-tethered form of the Notch intracellular domain. Subsequent cleavage within the transmembrane domain then leads to the release of the soluble Notch intracellular domain (NICD). tmpzr1t_l9r_go_relaxed.owl Notch S2 cleavage|Notch S3 cleavage bf 2010-02-26T02:31:31Z biological_process owl:Class GO:0031293 biolink:NamedThing membrane protein intracellular domain proteolysis The proteolytic cleavage of a transmembrane protein leading to the release of an intracellular domain. tmpzr1t_l9r_go_relaxed.owl membrane protein solubilization biological_process owl:Class GO:1904818 biolink:NamedThing visceral peritoneum development The process whose specific outcome is the progression of a visceral peritoneum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2015-11-17T19:00:17Z biological_process owl:Class GO:0072687 biolink:NamedThing meiotic spindle A spindle that forms as part of meiosis. Several proteins, such as budding yeast Spo21p, fission yeast Spo2 and Spo13, and C. elegans mei-1, localize specifically to the meiotic spindle and are absent from the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl mah 2011-07-08T05:17:08Z cellular_component owl:Class GO:1901870 biolink:NamedThing ecgonone methyl ester metabolic process The chemical reactions and pathways involving ecgonone methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonone methyl ester metabolism ms 2013-02-04T11:58:30Z biological_process owl:Class GO:0042213 biolink:NamedThing m-cresol catabolic process The chemical reactions and pathways resulting in the breakdown of m-cresol (3-hydroxytoluene), the meta-isoform of cresol. tmpzr1t_l9r_go_relaxed.owl m-cresol degradation|3-hydroxytoluene catabolic process|3-hydroxytoluene catabolism|meta-cresol catabolism|m-cresol catabolism|meta-cresol catabolic process|m-cresol breakdown UM-BBD_pathwayID:mcr|MetaCyc:M-CRESOL-DEGRADATION-PWY biological_process owl:Class GO:0008089 biolink:NamedThing anterograde axonal transport The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl anterograde axon cargo transport biological_process owl:Class GO:1903939 biolink:NamedThing regulation of TORC2 signaling Any process that modulates the frequency, rate or extent of TORC2 signaling. tmpzr1t_l9r_go_relaxed.owl regulation of TORC2 signal transduction al 2015-02-16T18:28:39Z biological_process owl:Class GO:2000128 biolink:NamedThing regulation of octopamine signaling pathway Any process that modulates the frequency, rate or extent of octopamine signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of octopamine signalling pathway mah 2010-09-29T09:29:41Z biological_process owl:Class GO:2000125 biolink:NamedThing regulation of octopamine or tyramine signaling pathway Any process that modulates the frequency, rate or extent of octopamine or tyramine signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of octopamine or tyramine signalling pathway|regulation of octopamine/tyramine signaling pathway mah 2010-09-29T09:27:12Z biological_process owl:Class GO:1901183 biolink:NamedThing positive regulation of camalexin biosynthetic process Any process that activates or increases the frequency, rate or extent of camalexin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of camalexin synthesis|positive regulation of camalexin synthesis|up-regulation of camalexin biosynthetic process|upregulation of camalexin biosynthetic process|upregulation of camalexin formation|activation of camalexin biosynthesis|up regulation of camalexin anabolism|activation of camalexin formation|up-regulation of camalexin synthesis|up regulation of camalexin formation|activation of camalexin biosynthetic process|activation of camalexin anabolism|positive regulation of camalexin formation|up-regulation of camalexin formation|positive regulation of camalexin anabolism|up regulation of camalexin biosynthesis|upregulation of camalexin synthesis|positive regulation of camalexin biosynthesis|upregulation of camalexin biosynthesis|up regulation of camalexin biosynthetic process|activation of camalexin synthesis|up-regulation of camalexin anabolism|upregulation of camalexin anabolism|up-regulation of camalexin biosynthesis tb 2012-07-23T02:17:21Z biological_process owl:Class GO:2000798 biolink:NamedThing negative regulation of amniotic stem cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of amniotic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-29T02:19:03Z biological_process owl:Class GO:0010495 biolink:NamedThing long-distance posttranscriptional gene silencing A posttranscriptional gene silencing process in which the silencing signal originates in a tissue separate from the tissue in which the silencing takes place. tmpzr1t_l9r_go_relaxed.owl long-distance propagation of posttranscriptional gene silencing biological_process owl:Class GO:0018102 biolink:NamedThing peptidyl-arginine hydroxylation to peptidyl-4-hydroxy-L-arginine The hydroxylation of peptidyl-arginine to form peptidyl-4-hydroxy-L-arginine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0215 biological_process owl:Class GO:0030961 biolink:NamedThing peptidyl-arginine hydroxylation The hydroxylation of peptidyl-arginine to form peptidyl-hydroxyarginine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061959 biolink:NamedThing response to (R)-carnitine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an (R)-carnitine stimulus. tmpzr1t_l9r_go_relaxed.owl response to L-carnitine dph 2018-01-19T13:31:39Z biological_process owl:Class GO:1901266 biolink:NamedThing cephalosporin C metabolic process The chemical reactions and pathways involving cephalosporin C. tmpzr1t_l9r_go_relaxed.owl cephalosporin C metabolism yaf 2012-08-17T14:25:59Z biological_process owl:Class GO:0043645 biolink:NamedThing cephalosporin metabolic process The chemical reactions and pathways involving a cephalosporin, any of large class of tetracyclic triterpene broad-spectrum antibiotics similar both chemically and in their mode of action to penicillin, first isolated from the culture filtrates of mediterranean fungus acremonium (cephalosporium acremonium), and effective against gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl cephalosporin metabolism biological_process owl:Class GO:2001224 biolink:NamedThing positive regulation of neuron migration Any process that activates or increases the frequency, rate or extent of neuron migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of neuron guidance|positive regulation of neuron chemotaxis|positive regulation of neuronal migration kmv 2011-11-17T10:01:49Z biological_process owl:Class GO:0099510 biolink:NamedThing calcium ion binding involved in regulation of cytosolic calcium ion concentration The directed change of cytosolic calcium ion concentration in the cytosol via the reversible binding of calcium ions to calcium-binding proteins in the cytosol thereby modulating the spatial and temporal dynamics of changes in cytosolic calcium concentrations. tmpzr1t_l9r_go_relaxed.owl regulation of cytosolic calcium ion concentration by calcium ion buffering molecular_function owl:Class GO:0044857 biolink:NamedThing plasma membrane raft organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of plasma membrane rafts. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:20:07Z biological_process owl:Class GO:0032999 biolink:NamedThing Fc-alpha receptor I complex A protein complex composed of an Fc-alpha R alpha chain and an Fc-epsilon RI gamma chain dimer with or without additional signaling components. The complex functions primarily as an activating receptor for IgA. tmpzr1t_l9r_go_relaxed.owl IgA receptor complex|immunoglobulin A receptor complex|FcaRI complex cellular_component owl:Class GO:0050567 biolink:NamedThing glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl glutamyl-tRNAGln:L-glutamine amido-ligase (ADP-forming)|glutamyl-tRNAGln amidotransferase activity|Glu-AdT activity|glutamyl-tRNA(Gln) amidotransferase activity|Glu-tRNA(Gln) amidotransferase activity|Glu-tRNAGln amidotransferase activity|Glu-tRNAGln:L-glutamine amido-ligase (ADP-forming)|glutaminyl-tRNA synthase (glutamine-hydrolysing) RHEA:17521|EC:6.3.5.7|Wikipedia:Glutaminyl-tRNA_synthase_(glutamine-hydrolysing)|MetaCyc:6.3.5.7-RXN GO:0008264|GO:0017068 molecular_function owl:Class GO:0007348 biolink:NamedThing regulation of syncytial blastoderm mitotic cell cycle A cell cycle process that modulates the rate or extent of the progression through the syncytial blastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of syncytial blastoderm cell cycle|regulation of syncytial blastoderm cell cycle progression|modulation of syncytial blastoderm cell cycle progression|syncytial blastoderm cell cycle modulation|syncytial blastoderm cell cycle regulator|syncytial blastoderm cell cycle regulation|regulation of progression through syncytial blastoderm mitotic cell cycle biological_process owl:Class GO:0060744 biolink:NamedThing mammary gland branching involved in thelarche The process in which the branching structure of the mammary gland duct is generated and organized during the period of sexual maturity in mammals. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. tmpzr1t_l9r_go_relaxed.owl mammary gland branching involved in puberty dph 2009-06-22T08:12:17Z biological_process owl:Class GO:0048346 biolink:NamedThing positive regulation of paraxial mesodermal cell fate determination Any process that activates or increases the frequency, rate or extent of paraxial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl activation of paraxial mesodermal cell fate determination|upregulation of paraxial mesodermal cell fate determination|up regulation of paraxial mesodermal cell fate determination|stimulation of paraxial mesodermal cell fate determination|up-regulation of paraxial mesodermal cell fate determination biological_process owl:Class GO:0048345 biolink:NamedThing regulation of paraxial mesodermal cell fate determination Any process that modulates the frequency, rate or extent of paraxial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030118 biolink:NamedThing clathrin coat A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes. tmpzr1t_l9r_go_relaxed.owl clathrin cage NIF_Subcellular:sao879919129|Wikipedia:Clathrin GO:0016190 cellular_component owl:Class GO:1900892 biolink:NamedThing positive regulation of pentadecane metabolic process Any process that activates or increases the frequency, rate or extent of pentadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of pentadecane metabolism|up regulation of pentadecane metabolic process|upregulation of pentadecane metabolic process|up-regulation of pentadecane metabolic process|up-regulation of pentadecane metabolism|upregulation of pentadecane metabolism|activation of pentadecane metabolism|activation of pentadecane metabolic process|positive regulation of pentadecane metabolism tt 2012-06-13T03:06:20Z biological_process owl:Class GO:0015706 biolink:NamedThing nitrate transport The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl low affinity nitrate transport|low-affinity nitrate transport GO:0080055|GO:0006872 biological_process owl:Class GO:0090513 biolink:NamedThing L-histidine transmembrane import into vacuole The directed movement of L-histidine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar histidine import|histidine transmembrane import into vacuole tb 2012-12-14T11:25:52Z GO:0090457 biological_process owl:Class GO:0045987 biolink:NamedThing positive regulation of smooth muscle contraction Any process that activates or increases the frequency, rate or extent of smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl stimulation of smooth muscle contraction|up-regulation of smooth muscle contraction|up regulation of smooth muscle contraction|activation of smooth muscle contraction|upregulation of smooth muscle contraction biological_process owl:Class GO:0002670 biolink:NamedThing regulation of B cell anergy Any process that modulates the frequency, rate, or extent of B cell anergy. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte anergy|regulation of B lymphocyte anergy|regulation of B-cell anergy biological_process owl:Class GO:0071052 biolink:NamedThing alpha9-beta1 integrin-ADAM1 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM1. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM1 complex mah 2009-11-03T03:55:15Z cellular_component owl:Class GO:0061743 biolink:NamedThing motor learning Any process in which an organism acquires a novel neuromuscular action or movement as the result of experience. tmpzr1t_l9r_go_relaxed.owl dph 2015-11-09T12:40:29Z biological_process owl:Class GO:0047110 biolink:NamedThing phenylglyoxylate dehydrogenase (acylating) activity Catalysis of the reaction: CoA + NAD(+) + phenylglyoxylate = benzoyl-CoA + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl phenylglyoxylate:NAD+ oxidoreductase activity MetaCyc:1.2.1.58-RXN|RHEA:10372|KEGG_REACTION:R02450|EC:1.2.1.58 molecular_function owl:Class GO:0045593 biolink:NamedThing negative regulation of cumulus cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of ovarian cumulus cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of cumulus cell differentiation|negative regulation of ovarian cumulus cell differentiation|inhibition of cumulus cell differentiation|downregulation of cumulus cell differentiation|down-regulation of cumulus cell differentiation biological_process owl:Class GO:0035691 biolink:NamedThing macrophage migration inhibitory factor signaling pathway A series of molecular signals initiated by the binding of macrophage migration inhibitory factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl MIF signaling pathway|macrophage migration inhibitory factor signalling pathway bf 2011-02-25T11:31:21Z biological_process owl:Class GO:0032379 biolink:NamedThing positive regulation of intracellular lipid transport Any process that activates or increases the frequency, rate or extent of the directed movement of lipids within cells. tmpzr1t_l9r_go_relaxed.owl activation of intracellular lipid transport|stimulation of intracellular lipid transport|up regulation of intracellular lipid transport|up-regulation of intracellular lipid transport|upregulation of intracellular lipid transport biological_process owl:Class GO:1900331 biolink:NamedThing negative regulation of methane biosynthetic process from trimethylamine Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from trimethylamine. tmpzr1t_l9r_go_relaxed.owl down regulation of methane biosynthetic process from trimethylamine|down-regulation of methane biosynthetic process from trimethylamine|inhibition of methane biosynthetic process from trimethylamine|downregulation of methane biosynthetic process from trimethylamine tt 2012-04-06T01:53:12Z biological_process owl:Class GO:0000247 biolink:NamedThing C-8 sterol isomerase activity Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols. tmpzr1t_l9r_go_relaxed.owl delta-8-delta-7 sterol isomerase activity molecular_function owl:Class GO:0009525 biolink:NamedThing phragmosome A flattened membranous vesicle containing cell wall components. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phragmosome cellular_component owl:Class GO:1900242 biolink:NamedThing regulation of synaptic vesicle endocytosis Any process that modulates the frequency, rate or extent of synaptic vesicle endocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic vesicle retrieval rl 2012-03-28T01:40:26Z biological_process owl:Class GO:0035513 biolink:NamedThing oxidative RNA demethylation The removal of the methyl group from one or more nucleotides within an RNA molecule involving oxidation (i.e. electron loss) of one or more atoms. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T02:25:35Z biological_process owl:Class GO:1905301 biolink:NamedThing regulation of macropinocytosis Any process that modulates the frequency, rate or extent of macropinocytosis. tmpzr1t_l9r_go_relaxed.owl regulation of clathrin-independent pinocytosis pad 2016-07-04T14:16:32Z biological_process owl:Class GO:0043518 biolink:NamedThing negative regulation of DNA damage response, signal transduction by p53 class mediator Any process that stops, prevents, or reduces the frequency, rate or extent of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl negative regulation of p53 induced by DNA damage response|down regulation of DNA damage response, signal transduction by p53 class mediator|down-regulation of DNA damage response, signal transduction by p53 class mediator|downregulation of DNA damage response, signal transduction by p53 class mediator|inhibition of DNA damage response, signal transduction by p53 class mediator biological_process owl:Class GO:0043516 biolink:NamedThing regulation of DNA damage response, signal transduction by p53 class mediator Any process that modulates the frequency, rate or extent of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl regulation of p53 induced by DNA damage response biological_process owl:Class GO:0045203 biolink:NamedThing integral component of cell outer membrane The component of the cell outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to cell outer membrane|integral to external membrane|integral to outer membrane cellular_component owl:Class GO:0060237 biolink:NamedThing regulation of fungal-type cell wall organization Any process that modulates the rate, frequency or extent of the formation, arrangement of constituent parts, or disassembly of the fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl regulation of fungal-type cell wall organization and biogenesis|regulation of fungal-type cell wall organisation biological_process owl:Class GO:0008303 biolink:NamedThing caspase complex A protein complex that contains one or more cysteine-type endopeptidases (also called caspases), which give the complex a peptidase activity with specificity for the hydrolysis of aspartyl bonds. These complexes may be involved e.g. in apoptotic or inflammation processes. tmpzr1t_l9r_go_relaxed.owl cysteine-type endopeptidase complex Note that this term was reinstated from obsolete. cellular_component owl:Class GO:0090107 biolink:NamedThing regulation of high-density lipoprotein particle assembly Any process that modulates the frequency, rate, or extent of high-density lipoprotein particle assembly. High-density lipoprotein particle assembly is the aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-25T10:50:18Z biological_process owl:Class GO:1905747 biolink:NamedThing negative regulation of saliva secretion Any process that stops, prevents or reduces the frequency, rate or extent of saliva secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of salivation|down regulation of saliva secretion|down-regulation of saliva secretion|down-regulation of salivation|downregulation of salivation|inhibition of saliva secretion|downregulation of saliva secretion|down regulation of salivation|inhibition of salivation pga 2016-12-09T10:24:00Z biological_process owl:Class GO:0140408 biolink:NamedThing regulation of mRNA alternative polyadenylation Any process that modulates the frequency, rate or extent of mRNA alternative polyadenylation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15389 pg 2019-12-13T12:48:14Z biological_process owl:Class GO:0032751 biolink:NamedThing positive regulation of interleukin-27 production Any process that activates or increases the frequency, rate, or extent of interleukin-27 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of IL-27 production|positive regulation of interleukin-27 anabolism|up-regulation of interleukin-27 production|upregulation of interleukin-27 production|positive regulation of interleukin-27 biosynthetic process|activation of interleukin-27 production|up regulation of interleukin-27 production|stimulation of interleukin-27 production GO:0045539 biological_process owl:Class GO:1902320 biolink:NamedThing nuclear DNA replication DNA duplex unwinding Any DNA duplex unwinding that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl duplex DNA melting involved in DNA replication during S phase|DNA duplex unwinding involved in DNA replication involved in S phase|DNA duplex unwinding involved in nuclear cell cycle DNA replication|DNA duplex unwinding involved in DNA replication during S phase|duplex DNA melting involved in DNA replication involved in S phase|DNA unwinding involved in DNA replication during S phase|DNA unwinding involved in DNA replication involved in S phase|DNA duplex unwinding involved in DNA replication involved in S-phase|duplex DNA melting involved in DNA replication involved in S-phase|DNA unwinding involved in DNA replication involved in S-phase|DNA unwinding involved in nuclear cell cycle DNA replication jl 2013-07-23T14:00:49Z biological_process owl:Class GO:0043509 biolink:NamedThing activin A complex A nonsteroidal regulator, composed of two covalently linked inhibin beta-A subunits (sometimes known as activin beta-A or activin/inhibin beta-A). tmpzr1t_l9r_go_relaxed.owl Note that the actions of the activin complex are the opposite of those of the inhibin complex, which is a dimer of an inhibin beta-A or inhibin beta-B subunit and an inhibin alpha subunit. See also the cellular component term 'inhibin complex ; GO:0043511'. GO:0048181 cellular_component owl:Class GO:0098672 biolink:NamedThing inhibition of host CRISPR-cas system by virus A process by which a virus inhibits the CRISPR-cas system of its host. tmpzr1t_l9r_go_relaxed.owl anti-CRISPR|CRISPR-cas system evasion by virus|evasion by virus of CRISPR-cas system https://github.com/geneontology/go-ontology/issues/16423 VZ:3962 dos 2017-01-16T13:38:27Z biological_process owl:Class GO:0090138 biolink:NamedThing regulation of actin cytoskeleton organization by cell-cell adhesion Any cell-cell adhesion process that modulates the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl regulation of actin cytoskeleton organisation by cell-cell adhesion tb 2009-12-08T02:05:00Z biological_process owl:Class GO:0032956 biolink:NamedThing regulation of actin cytoskeleton organization Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl regulation of actin cytoskeleton organisation|regulation of actin cytoskeleton organization and biogenesis biological_process owl:Class GO:1904042 biolink:NamedThing negative regulation of cystathionine beta-synthase activity Any process that stops, prevents or reduces the frequency, rate or extent of cystathionine beta-synthase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of serine sulfhydrase activity|inhibition of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|down regulation of cystathionine beta-synthase activity|inhibition of serine sulfhydrylase activity|downregulation of methylcysteine synthase activity|downregulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|inhibition of cystathionine beta-synthase activity|inhibition of serine sulfhydrase activity|inhibition of L-serine hydro-lyase (adding homocysteine)|downregulation of L-serine hydro-lyase (adding homocysteine)|downregulation of cystathionine beta-synthase activity|negative regulation of serine sulfhydrylase activity|negative regulation of beta-thionase activity|down-regulation of cystathionine beta-synthase activity|down-regulation of serine sulfhydrylase activity|down-regulation of beta-thionase activity|negative regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|inhibition of methylcysteine synthase activity|downregulation of serine sulfhydrylase activity|inhibition of beta-thionase activity|down regulation of beta-thionase activity|down-regulation of serine sulfhydrase activity|down regulation of L-serine hydro-lyase (adding homocysteine)|negative regulation of serine sulfhydrase activity|negative regulation of L-serine hydro-lyase (adding homocysteine)|down regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|down regulation of serine sulfhydrylase activity|negative regulation of methylcysteine synthase activity|downregulation of beta-thionase activity|down-regulation of L-serine hydro-lyase (adding homocysteine)|down-regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)|down regulation of methylcysteine synthase activity|down-regulation of methylcysteine synthase activity|downregulation of serine sulfhydrase activity hal 2015-03-16T15:52:47Z biological_process owl:Class GO:1900338 biolink:NamedThing positive regulation of methane biosynthetic process from carbon monoxide Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from carbon monoxide. tmpzr1t_l9r_go_relaxed.owl upregulation of methane biosynthetic process from carbon monoxide|up-regulation of methane biosynthetic process from carbon monoxide|up regulation of methane biosynthetic process from carbon monoxide|activation of methane biosynthetic process from carbon monoxide tt 2012-04-06T02:03:33Z biological_process owl:Class GO:1901303 biolink:NamedThing negative regulation of cargo loading into COPII-coated vesicle Any process that stops, prevents or reduces the frequency, rate or extent of cargo loading into a COPII-coated vesicle. tmpzr1t_l9r_go_relaxed.owl down regulation of cargo selection into COPII-coated vesicle|down-regulation of cargo loading into COPII vesicle|inhibition of protein sorting into COPII-coated vesicles|inhibition of cargo loading into COPII vesicle|downregulation of COPII coat-cargo complex assembly|inhibition of cargo loading into COPII-coated vesicle|down regulation of COPII coat-cargo complex assembly|downregulation of cargo loading into COPII-coated vesicle|down regulation of cargo loading into COPII vesicle|inhibition of cargo selection into COPII-coated vesicle|downregulation of cargo selection into COPII-coated vesicle|negative regulation of cargo selection into COPII-coated vesicle|inhibition of COPII vesicle protein binding|down-regulation of cargo loading into COPII-coated vesicle|negative regulation of cargo loading into COPII vesicle|downregulation of cargo loading into COPII vesicle|down regulation of cargo loading into COPII-coated vesicle|negative regulation of COPII coat-cargo complex assembly|down-regulation of cargo selection into COPII-coated vesicle|inhibition of COPII coat-cargo complex assembly|down-regulation of COPII coat-cargo complex assembly bf 2012-08-21T13:05:46Z biological_process owl:Class GO:0002451 biolink:NamedThing peripheral B cell tolerance induction Tolerance induction of mature B cells in the peripheral lymphoid tissues: the blood, lymph nodes, spleen, and mucosal-associated lymphoid tissue. tmpzr1t_l9r_go_relaxed.owl peripheral B-cell tolerance induction|peripheral B-lymphocyte tolerance induction|peripheral B lymphocyte tolerance induction biological_process owl:Class GO:0004992 biolink:NamedThing platelet activating factor receptor activity Combining with platelet activating factor to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PAF receptor activity molecular_function owl:Class GO:0044486 biolink:NamedThing modulation of transmission of nerve impulse in other organism The process in which an organism effects a change in the transmission of a nerve impulse in another organism. tmpzr1t_l9r_go_relaxed.owl modulation of conduction of nerve impulse in other organism|regulation of transmission of nerve impulse in other organism jl 2012-01-26T04:03:31Z biological_process owl:Class GO:0061589 biolink:NamedThing calcium activated phosphatidylserine scrambling The movement of a population of phosphatidylserine molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-05T15:17:21Z biological_process owl:Class GO:0061588 biolink:NamedThing calcium activated phospholipid scrambling The movement of a population of phospholipid molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-05T15:14:34Z biological_process owl:Class GO:1902296 biolink:NamedThing DNA strand elongation involved in cell cycle DNA replication Any DNA strand elongation that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication elongation involved in cell cycle DNA replication|DNA strand elongation during DNA replication involved in cell cycle DNA replication jl 2013-07-10T11:47:02Z biological_process owl:Class GO:0006271 biolink:NamedThing DNA strand elongation involved in DNA replication The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication elongation|DNA strand elongation during DNA replication https://github.com/geneontology/go-ontology/issues/12633 biological_process owl:Class GO:0097053 biolink:NamedThing L-kynurenine catabolic process The chemical reactions and pathways resulting in the breakdown of L-kynurenine, the L-enantiomer of the amino acid kynurenine (3-(2-aminobenzoyl)-alanine). tmpzr1t_l9r_go_relaxed.owl L-kynurenine breakdown|L-kynurenine catabolism|L-kynurenine degradation pr 2011-05-24T03:30:58Z biological_process owl:Class GO:0043051 biolink:NamedThing regulation of pharyngeal pumping Any process that modulates the contraction and relaxation movements of the pharyngeal muscle that mediates feeding in nematodes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018217 biolink:NamedThing peptidyl-aspartic acid phosphorylation The phosphorylation of peptidyl-aspartic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071597 biolink:NamedThing cellular birth scar Crater-like ring of chitinous scar tissue located on the surface of the daughter cell, in budding fungi, at the site of separation from the mother cell. It is formed after the newly emerged daughter cell separates, thereby marking the site of cytokinesis and septation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-02T02:42:44Z cellular_component owl:Class GO:0046929 biolink:NamedThing negative regulation of neurotransmitter secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl inhibition of neurotransmitter secretion|down regulation of neurotransmitter secretion|conotoxin activity|downregulation of neurotransmitter secretion|down-regulation of neurotransmitter secretion biological_process owl:Class GO:1901665 biolink:NamedThing negative regulation of NAD+ ADP-ribosyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of NAD+ ADP-ribosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of ADP-ribosyltransferase (polymerizing) activity|inhibition of poly(ADP-ribose) synthetase activity|downregulation of poly(ADP-ribose) synthase activity|negative regulation of poly(ADP-ribose) synthase activity|negative regulation of poly(adenosine diphosphate ribose) polymerase activity|down regulation of NAD ADP-ribosyltransferase activity|down regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|negative regulation of poly(ADP-ribose)polymerase activity|downregulation of poly(ADP-ribose)polymerase activity|downregulation of NAD ADP-ribosyltransferase activity|downregulation of poly(ADP-ribose) synthetase activity|negative regulation of NAD ADP-ribosyltransferase activity|inhibition of NAD+ ADP-ribosyltransferase activity|down regulation of poly(ADP-ribose) synthase activity|down regulation of ADP-ribosyltransferase (polymerizing) activity|negative regulation of ADP-ribosyltransferase (polymerizing) activity|inhibition of NAD ADP-ribosyltransferase activity|down regulation of NAD+ ADP-ribosyltransferase activity|down-regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|inhibition of poly(ADP-ribose)polymerase activity|downregulation of ADP-ribosyltransferase (polymerizing) activity|down regulation of poly(ADP-ribose) synthetase activity|down regulation of poly(ADP-ribose)polymerase activity|downregulation of NAD+ ADP-ribosyltransferase activity|down-regulation of NAD+ ADP-ribosyltransferase activity|down-regulation of NAD ADP-ribosyltransferase activity|negative regulation of poly(ADP-ribose) synthetase activity|inhibition of poly(adenosine diphosphate ribose) polymerase activity|down regulation of poly(adenosine diphosphate ribose) polymerase activity|inhibition of poly(ADP-ribose) synthase activity|downregulation of poly(adenosine diphosphate ribose) polymerase activity|down-regulation of poly(ADP-ribose) synthetase activity|negative regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|downregulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|down-regulation of ADP-ribosyltransferase (polymerizing) activity|down-regulation of poly(ADP-ribose)polymerase activity|inhibition of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|down-regulation of poly(adenosine diphosphate ribose) polymerase activity|down-regulation of poly(ADP-ribose) synthase activity vk 2012-11-20T18:50:15Z biological_process owl:Class GO:0008907 biolink:NamedThing integrase activity Catalysis of the integration of one DNA segment into another. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-164523 molecular_function owl:Class GO:0048081 biolink:NamedThing positive regulation of cuticle pigmentation Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl up regulation of cuticle pigmentation|upregulation of cuticle pigmentation|up-regulation of cuticle pigmentation|activation of cuticle pigmentation|stimulation of cuticle pigmentation biological_process owl:Class GO:0098518 biolink:NamedThing polynucleotide phosphatase activity Catalysis of the reaction: phosphopolynucleotide + H2O = polynucleotide + phosphate. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-26T11:02:35Z molecular_function owl:Class GO:0043414 biolink:NamedThing macromolecule methylation The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120114 biolink:NamedThing Sm-like protein family complex A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-06T18:46:43Z cellular_component owl:Class GO:0047457 biolink:NamedThing exo-(1,4)-alpha-D-glucan lyase activity Catalysis of the reaction: linear alpha-D-glucan = 1,5-anhydro-D-fructose + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl (1->4)-alpha-D-glucan exo-4-lyase (1,5-anhydro-D-fructose-forming)|alpha-(1->4)-glucan 1,5-anhydro-D-fructose eliminase activity|exo-(1->4)-alpha-D-glucan lyase activity|alpha-1,4-glucan exo-lyase activity|exo-alpha-1,4-glucan lyase activity|alpha-1,4-glucan 1,5-anhydro-D-fructose eliminase activity|alpha-1,4-glucan lyase activity MetaCyc:4.2.2.13-RXN|EC:4.2.2.13 molecular_function owl:Class GO:0072306 biolink:NamedThing positive regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis Any process that increases the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl positive regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis|positive regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis mah 2010-04-09T05:03:41Z biological_process owl:Class GO:0047489 biolink:NamedThing pectate disaccharide-lyase activity Catalysis of the reaction: a pectate = a pectate + 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate. This reaction is the eliminative cleavage of 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate from the reducing end of pectate, i.e. de-esterified pectin. tmpzr1t_l9r_go_relaxed.owl PATE activity|exopectate lyase activity|Exo-PGL activity|exopectic acid transeliminase activity|exopolygalacturonate lyase activity|Exo-PATE activity|pectate exo-lyase activity|exo-PATE|exopolygalacturonic acid-trans-eliminase activity|(1->4)-alpha-D-galacturonan reducing-end-disaccharide-lyase activity|exo-PGL EC:4.2.2.9|RHEA:57104|MetaCyc:4.2.2.9-RXN molecular_function owl:Class GO:0010846 biolink:NamedThing activation of reciprocal meiotic recombination Any process that starts the inactive process of reciprocal meiotic recombination. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl activation of meiotic recombination biological_process owl:Class GO:0035200 biolink:NamedThing leg disc anterior/posterior pattern formation The establishment, maintenance and elaboration of the anterior/posterior axis of the leg imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007448 biolink:NamedThing anterior/posterior pattern specification, imaginal disc The establishment, maintenance and elaboration of the anterior/posterior axis of the imaginal disc. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that rapidly develop into adult appendages during metamorphosis from larval to adult form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072223 biolink:NamedThing metanephric glomerular mesangium development The process whose specific outcome is the progression of the metanephric glomerular mesangium over time, from its formation to the mature structure. The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:35:56Z biological_process owl:Class GO:0080150 biolink:NamedThing S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity Catalysis of the reaction: benzoate + S-adenosyl-L-methionine = methylbenzoate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:benzoate carboxyl methyltransferase activity RHEA:36099|MetaCyc:RXN-6722 dhl 2010-03-26T04:19:39Z molecular_function owl:Class GO:0043819 biolink:NamedThing precorrin-6A synthase (deacetylating) activity Catalysis of the reaction: S-adenosyl-L-methionine + H(2)O + precorrin-5 = S-adenosyl-L-homocysteine + acetate + 2 H(+) + precorrin-6X. tmpzr1t_l9r_go_relaxed.owl CobF|S-adenosyl-L-methionine:precorrin-5 C1-methyltransferase (deacetylating)|precorrin-6X synthase (deacetylating) activity EC:2.1.1.152|RHEA:18261|MetaCyc:R322-RXN|KEGG_REACTION:R05219 molecular_function owl:Class GO:0047504 biolink:NamedThing (-)-menthol dehydrogenase activity Catalysis of the reaction: (-)-menthol + NADP(+) = (2S,5R)-menthone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl monoterpenoid dehydrogenase activity|(-)-menthol:NADP+ oxidoreductase activity KEGG_REACTION:R02177|EC:1.1.1.207|RHEA:13917|UM-BBD_reactionID:r1182|MetaCyc:--MENTHOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:1903856 biolink:NamedThing regulation of cytokinin dehydrogenase activity Any process that modulates the frequency, rate or extent of cytokinin dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl regulation of N6-dimethylallyladenine:(acceptor) oxidoreductase activity|regulation of 6-N-dimethylallyladenine:acceptor oxidoreductase activity|regulation of cytokinin oxidase activity|regulation of N6-dimethylallyladenine:acceptor oxidoreductase activity tb 2015-01-30T00:33:51Z biological_process owl:Class GO:1904145 biolink:NamedThing negative regulation of meiotic cell cycle process involved in oocyte maturation Any process that stops, prevents or reduces the frequency, rate or extent of meiotic cell cycle process involved in oocyte maturation. tmpzr1t_l9r_go_relaxed.owl down-regulation of meiotic cell cycle process involved in oocyte maturation|downregulation of meiotic cell cycle process involved in oocyte maturation|inhibition of meiotic cell cycle process involved in oocyte maturation|down regulation of meiotic cell cycle process involved in oocyte maturation tb 2015-04-14T15:59:22Z biological_process owl:Class GO:0018251 biolink:NamedThing peptidyl-tyrosine dehydrogenation The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-dehydrotyrosine coupled with cyclization of neighboring residues. tmpzr1t_l9r_go_relaxed.owl RESID:AA0183 See also the biological process terms 'peptide cross-linking via L-seryl-5-imidazolinone glycine ; GO:0018252' and 'peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine ; GO:0019729'. biological_process owl:Class GO:1905833 biolink:NamedThing negative regulation of microtubule nucleation Any process that stops, prevents or reduces the frequency, rate or extent of microtubule nucleation. tmpzr1t_l9r_go_relaxed.owl down regulation of microtubule nucleation|inhibition of microtubule nucleation|down-regulation of microtubule nucleation|downregulation of microtubule nucleation hbye 2017-01-17T12:00:56Z biological_process owl:Class GO:0004143 biolink:NamedThing diacylglycerol kinase activity Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol-3-phosphate. tmpzr1t_l9r_go_relaxed.owl CTP:diacylglycerol kinase activity|DGK activity|1,2-diacylglycerol kinase (phosphorylating)|DG kinase activity|ATP:1,2-diacylglycerol 3-phosphotransferase activity|sn-1,2-diacylglycerol kinase activity|ATP:diacylglycerol phosphotransferase activity|1,2-diacylglycerol kinase activity|arachidonoyl-specific diacylglycerol kinase activity|diacylglycerol:ATP kinase activity|diglyceride kinase activity EC:2.7.1.107|Reactome:R-HSA-426240|RHEA:10272|MetaCyc:DIACYLGLYKIN-RXN molecular_function owl:Class GO:0019435 biolink:NamedThing sophorosyloxydocosanoate biosynthetic process The chemical reactions and pathways resulting in the formation of sophorosyloxydocosanoate, 13-sophorosyloxydocosanoate 6',6''-diacetate. tmpzr1t_l9r_go_relaxed.owl sophorosyloxydocosanoate anabolism|sophorosyloxydocosanoate formation|sophorosyloxydocosanoate biosynthesis|sophorosyloxydocosanoate synthesis MetaCyc:SOPHOROSYLOXYDOCOSANOATE-SYN-PWY biological_process owl:Class GO:0019434 biolink:NamedThing sophorosyloxydocosanoate metabolic process The chemical reactions and pathways involving sophorosyloxydocosanoate, 13-sophorosyloxydocosanoate 6',6''-diacetate, an aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl sophorosyloxydocosanoate metabolism biological_process owl:Class GO:1904643 biolink:NamedThing response to curcumin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a curcumin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T20:38:11Z biological_process owl:Class GO:2000313 biolink:NamedThing regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation. tmpzr1t_l9r_go_relaxed.owl regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation vk 2011-01-18T10:26:22Z biological_process owl:Class GO:0040036 biolink:NamedThing regulation of fibroblast growth factor receptor signaling pathway Any process that modulates the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl regulation of FGF receptor signalling pathway|regulation of FGFR signaling pathway|regulation of FGF receptor signaling pathway biological_process owl:Class GO:0018231 biolink:NamedThing peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form peptidyl-S-diacylglycerol-L-cysteine; the oleate and palmitate actually represent mixtures of saturated (generally at 3') and unsaturated (generally at 2') fatty acids. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-diacylglycerol-L-cysteine synthesis from peptidyl-cysteine|peptidyl-S-diacylglycerol-L-cysteine formation from peptidyl-cysteine|peptidyl-S-diacylglycerol-L-cysteine anabolism from peptidyl-cysteine RESID:AA0107 biological_process owl:Class GO:0035649 biolink:NamedThing Nrd1 complex A complex that functions in transcription termination of RNA polymerase II transcribed non-coding RNAs. This complex interacts with the carboxy-terminal domain (CTD) of PolII and the terminator sequences in the nascent RNA transcript. In yeast this complex consists of Nrd1p, Nab3p, and Sen1p. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-25T10:23:25Z cellular_component owl:Class GO:0004568 biolink:NamedThing chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. tmpzr1t_l9r_go_relaxed.owl poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase activity|beta-1,4-poly-N-acetyl glucosamidinase activity|1,4-beta-poly-N-acetylglucosaminidase activity|chitodextrinase activity|poly-beta-glucosaminidase activity MetaCyc:3.2.1.14-RXN|EC:3.2.1.14|Reactome:R-HSA-6786421 molecular_function owl:Class GO:1905495 biolink:NamedThing positive regulation of G-quadruplex DNA binding Any process that activates or increases the frequency, rate or extent of G-quadruplex DNA binding. tmpzr1t_l9r_go_relaxed.owl up regulation of G quadruplex DNA binding|positive regulation of G quartet DNA binding|up-regulation of G quadruplex DNA binding|upregulation of G quartet DNA binding|up regulation of tetraplex DNA binding|upregulation of tetraplex DNA binding|up-regulation of G-quartet DNA binding|up regulation of quadruplex DNA binding|activation of G quadruplex DNA binding|up regulation of G-quadruplex DNA binding|activation of G-quartet DNA binding|upregulation of quadruplex DNA binding|up-regulation of quadruplex DNA binding|positive regulation of G quadruplex DNA binding|upregulation of G-DNA binding|up regulation of G quartet DNA binding|up regulation of G-DNA binding|up-regulation of tetraplex DNA binding|activation of quadruplex DNA binding|positive regulation of G-quartet DNA binding|activation of G-DNA binding|positive regulation of G-DNA binding|activation of G quartet DNA binding|positive regulation of tetraplex DNA binding|up-regulation of G-DNA binding|upregulation of G-quadruplex DNA binding|up-regulation of G-quadruplex DNA binding|activation of tetraplex DNA binding|activation of G-quadruplex DNA binding|upregulation of G-quartet DNA binding|up regulation of G-quartet DNA binding|positive regulation of quadruplex DNA binding|upregulation of G quadruplex DNA binding|up-regulation of G quartet DNA binding ans 2016-09-26T14:53:37Z biological_process owl:Class GO:0045815 biolink:NamedThing epigenetic maintenance of chromatin in transcription-competent conformation An epigenetic process that capacitates gene expression by remodelling of chromatin by either modifying the chromatin fiber, the nucleosomal histones, or the DNA. tmpzr1t_l9r_go_relaxed.owl up regulation of gene expression, epigenetic|euchromatin organisation|maintenance of chromatin in transcription-competent conformation|euchromatin assembly|long-term maintenance of gene activation|activation of gene expression, epigenetic|chromatin-mediated maintenance of transcription|stimulation of gene expression, epigenetic|up-regulation of gene expression, epigenetic|euchromatin organization|upregulation of gene expression, epigenetic|positive regulation of gene expression, epigenetic https://github.com/geneontology/go-ontology/issues/21730|https://github.com/geneontology/go-ontology/issues/22012 This regulation is exemplified by members of the trithorax group, which maintain the active state of homeotic gene transcription. Do not confuse with GO:0140673 ; co-transcriptional chromatin reassembly, which describes the reforming of chromatin after RNA polymerase II passage. GO:0048096 biological_process owl:Class GO:0061378 biolink:NamedThing corpora quadrigemina development The progression of the corpora quadrigemina over time, from its formation to the mature structure. The corpora quadrigemina is a part of the midbrain that is made up of the superior and inferior colliculi. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:45:36Z biological_process owl:Class GO:0042249 biolink:NamedThing establishment of planar polarity of embryonic epithelium Coordinated organization of groups of cells in the plane of an embryonic epithelium, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008968 biolink:NamedThing D-sedoheptulose 7-phosphate isomerase activity Catalysis of the reaction: D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoheptose isomerase activity MetaCyc:RXN0-4301|RHEA:27489 molecular_function owl:Class GO:0060711 biolink:NamedThing labyrinthine layer development The process in which the labyrinthine layer of the placenta progresses, from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T03:27:43Z biological_process owl:Class GO:1990315 biolink:NamedThing Mcs4 RR-MAPKKK complex A protein complex that consists of a phospho relay component and a MAPK cascade component. The complex is involved in signaling oxidative stress and osmostress. tmpzr1t_l9r_go_relaxed.owl In S. pombe it consists of Mpr1, Tdh1, Mcs4, Win1, Wis4 and Wis1. al 2014-03-14T09:59:45Z cellular_component owl:Class GO:0120186 biolink:NamedThing negative regulation of protein localization to chromatin Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to chromatin. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localisation to chromatin krc 2018-07-14T00:19:32Z biological_process owl:Class GO:1905634 biolink:NamedThing regulation of protein localization to chromatin Any process that modulates the frequency, rate or extent of protein localization to chromatin. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to chromatin pga 2016-11-01T16:33:52Z biological_process owl:Class GO:0046511 biolink:NamedThing sphinganine biosynthetic process The chemical reactions and pathways resulting in the formation of sphinganine, D-erythro-2-amino-1,3-octadecanediol. tmpzr1t_l9r_go_relaxed.owl dihydrosphingosine biosynthetic process|dihydrosphingosine biosynthesis|sphinganine biosynthesis|sphinganine formation|sphinganine synthesis|sphinganine anabolism biological_process owl:Class GO:0034312 biolink:NamedThing diol biosynthetic process The chemical reactions and pathways resulting in the formation of a diol, any alcohol containing two hydroxyl groups attached to saturated carbon atoms. tmpzr1t_l9r_go_relaxed.owl dihydric alcohol biosynthetic process|diol anabolism|diol synthesis|diol formation|diol biosynthesis biological_process owl:Class GO:0019731 biolink:NamedThing antibacterial humoral response An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl GO:0006961|GO:0019733 biological_process owl:Class GO:0010457 biolink:NamedThing centriole-centriole cohesion The cell cycle process in which the two centrioles within a centrosome remain tightly paired. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010829 biolink:NamedThing negative regulation of glucose transmembrane transport Any process that decreases the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucose transport biological_process owl:Class GO:0080164 biolink:NamedThing regulation of nitric oxide metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T04:02:50Z biological_process owl:Class GO:0120292 biolink:NamedThing positive regulation of mitotic recombination-dependent replication fork processing Any process that activates or increases the frequency, rate or extent of replication fork processing that includes recombination between DNA near the arrested fork and homologous sequences. Proteins involved in homologous recombination are required for replication restart. tmpzr1t_l9r_go_relaxed.owl positive regulation of homologous recombination-dependent replication fork processing|positive regulation of homologous recombination dependent replication fork recovery|positive regulation of recombination-dependent DNA replication krc 2021-01-06T19:09:21Z biological_process owl:Class GO:0019786 biolink:NamedThing Atg8-specific protease activity Catalysis of the hydrolysis of APG8, a small ubiquitin-related modifier. tmpzr1t_l9r_go_relaxed.owl APG8-PE hydrolase|APG8-specific protease activity molecular_function owl:Class GO:0043626 biolink:NamedThing PCNA complex A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation. tmpzr1t_l9r_go_relaxed.owl proliferating cell nuclear antigen complex|PCNA homotrimer|sliding clamp cellular_component owl:Class GO:0003362 biolink:NamedThing noradrenergic neuron fate commitment involved in brainstem development The process in which the developmental fate of a cell becomes restricted such that it will develop into a noradrenergic neuron that is part of the brainstem. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-03T10:56:16Z biological_process owl:Class GO:0003359 biolink:NamedThing noradrenergic neuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a noradrenergic neuron. tmpzr1t_l9r_go_relaxed.owl norepinephrine secreting neuron fate commitment dph 2009-12-03T10:41:08Z biological_process owl:Class GO:0009939 biolink:NamedThing positive regulation of gibberellic acid mediated signaling pathway Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity. tmpzr1t_l9r_go_relaxed.owl stimulation of gibberellic acid mediated signaling|activation of gibberellic acid mediated signaling|upregulation of gibberellic acid mediated signaling|up regulation of gibberellic acid mediated signaling|positive regulation of gibberellic acid mediated signalling|up-regulation of gibberellic acid mediated signaling biological_process owl:Class GO:0047568 biolink:NamedThing 3-oxo-5-beta-steroid 4-dehydrogenase activity Catalysis of the reaction: a 3-oxo-5-beta-steroid + acceptor = a 3-oxo-D4-steroid + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 3-oxo-5beta-steroid 4-dehydrogenase activity|delta4-3-ketosteroid 5-beta-reductase activity|3-oxo-5beta-steroid:acceptor delta4-oxidoreductase activity|3-oxo-5beta-steroid:(acceptor) delta4-oxidoreductase activity RHEA:24172|MetaCyc:3-OXO-5-BETA-STEROID-4-DEHYDROGENASE-RXN|EC:1.3.99.6 molecular_function owl:Class GO:0002241 biolink:NamedThing response to parasitic plant Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a parasitic plant. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102766 biolink:NamedThing naringenin 7-O-methyltransferase activity Catalysis of the reaction: (S)-naringenin(1-) + S-adenosyl-L-methionine <=> sakuranetin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:31539|EC:2.1.1.232|MetaCyc:RXN-7773 molecular_function owl:Class GO:0062200 biolink:NamedThing RAM/MOR signaling pathway An intracellular signaling pathway that regulates interphase polarized growth and cell separation at the end of cytokinesis through activation of the NDR1/2-related kinase. tmpzr1t_l9r_go_relaxed.owl RAM signaling pathway|MOR signaling pathway|morphogenesis Orb6 network dph 2019-12-17T20:21:12Z biological_process owl:Class GO:0015671 biolink:NamedThing oxygen transport The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015669 biolink:NamedThing gas transport The directed movement of substances that are gaseous in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061896 biolink:NamedThing all-trans retinol 3,4-desaturase activity Catalysis of the reaction: all-trans-retinol + 2 H(+) + O2 + 2 reduced [adrenodoxin] = all-trans-3,4-didehydro retinol + 2 H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl RHEA:50292 dph 2017-06-12T14:49:30Z molecular_function owl:Class GO:2000672 biolink:NamedThing negative regulation of motor neuron apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of motor neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of motoneuron apoptosis|negative regulation of motor neuron apoptosis pr 2011-05-09T10:56:21Z biological_process owl:Class GO:0035538 biolink:NamedThing carbohydrate response element binding Binding to a carbohydrate response element (ChoRE) found in the promoters of genes whose expression is regulated in response to carbohydrates, such as the triglyceride synthesis genes. tmpzr1t_l9r_go_relaxed.owl ChoRE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. bf 2010-05-07T10:48:30Z molecular_function owl:Class GO:2001077 biolink:NamedThing (1->3),(1->4)-beta-glucan binding Binding to (1->3),(1->4)-beta-glucan. tmpzr1t_l9r_go_relaxed.owl beta-(1,3),(1,4)-glucan binding|beta-(1->3),(1->4)-glucan binding|beta-1,3-1,4-glucan binding|beta-1->3,1->4-glucan binding|1->3,1->4-beta-glucan binding|(1,3),(1,4)-beta-glucan binding jl 2011-09-15T09:07:33Z molecular_function owl:Class GO:2000603 biolink:NamedThing regulation of secondary growth Any process that modulates the frequency, rate or extent of secondary growth. tmpzr1t_l9r_go_relaxed.owl tb 2011-04-15T10:30:44Z biological_process owl:Class GO:0034354 biolink:NamedThing 'de novo' NAD biosynthetic process from tryptophan The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of tryptophan from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl de novo NAD biosynthetic process from tryptophan biological_process owl:Class GO:0070041 biolink:NamedThing rRNA (uridine-C5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C5-methyluridine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047689 biolink:NamedThing aspartate racemase activity Catalysis of the reaction: L-aspartate = D-aspartate. tmpzr1t_l9r_go_relaxed.owl D-aspartate racemase activity RHEA:14973|EC:5.1.1.13|MetaCyc:ASPARTATE-RACEMASE-RXN|KEGG_REACTION:R00491 molecular_function owl:Class GO:1904690 biolink:NamedThing positive regulation of cytoplasmic translational initiation Any process that activates or increases the frequency, rate or extent of cytoplasmic translational initiation. tmpzr1t_l9r_go_relaxed.owl up regulation of cytoplasmic translational initiation|upregulation of cytoplasmic translational initiation|activation of cytoplasmic translational initiation|up-regulation of cytoplasmic translational initiation dos 2015-09-25T14:39:50Z biological_process owl:Class GO:0031009 biolink:NamedThing plastid ADPG pyrophosphorylase complex An ADPG pyrophosphorylase complex found in a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034911 biolink:NamedThing phthalate 3,4-dioxygenase activity Catalysis of the reaction: phthalate + O2 + NADH + H+ = phthalate 3,4-cis-dihydrodiol + NAD+. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r1444 molecular_function owl:Class GO:0033440 biolink:NamedThing ACG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an ACG codon. tmpzr1t_l9r_go_relaxed.owl threonine tRNA Note that in the standard genetic code, ACG codes for threonine. molecular_function owl:Class GO:0032261 biolink:NamedThing purine nucleotide salvage Any process which produces a purine nucleotide from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008759 biolink:NamedThing UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity Catalysis of the removal of an acetyl group from the 2-N position of glucosamine in the lipid A precursor UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine. tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.108 molecular_function owl:Class GO:1900169 biolink:NamedThing regulation of glucocorticoid mediated signaling pathway Any process that modulates the frequency, rate or extent of glucocorticoid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of glucocorticoid mediated signalling hjd 2012-03-08T08:33:16Z biological_process owl:Class GO:0099170 biolink:NamedThing postsynaptic modulation of chemical synaptic transmission Any process, acting in the postsynapse that results in modulation of chemical synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-11T17:09:17Z biological_process owl:Class GO:0090556 biolink:NamedThing phosphatidylserine floppase activity Catalysis of the movement of phosphatidylserine from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ATPase-dependent phosphatidylserine transporter activity|ATPase-coupled phosphatidylserine transporter activity|phosphatidylserine floppase activity (cytosolic to exoplasmic leaftlet)|phosphatidylserine-translocating ATPase activity RHEA:38567 tb 2013-10-24T16:07:20Z molecular_function owl:Class GO:1905789 biolink:NamedThing positive regulation of detection of mechanical stimulus involved in sensory perception of touch Any process that activates or increases the frequency, rate or extent of detection of mechanical stimulus involved in sensory perception of touch. tmpzr1t_l9r_go_relaxed.owl up-regulation of perception of touch, sensory transduction of mechanical stimulus|activation of detection of mechanical stimulus involved in sensory perception of touch|positive regulation of perception of touch, detection of mechanical stimulus|upregulation of tactition, sensory detection of mechanical stimulus|up regulation of sensory detection of mechanical stimulus during perception of touch|up regulation of perception of touch, detection of mechanical stimulus|positive regulation of perception of touch, sensory transduction of mechanical stimulus|up-regulation of perception of touch, detection of mechanical stimulus|up regulation of perception of touch, sensory transduction of mechanical stimulus|up regulation of detection of mechanical stimulus involved in sensory perception of touch|upregulation of perception of touch, sensory detection of mechanical stimulus|positive regulation of perception of touch, sensory detection of mechanical stimulus|positive regulation of sensory transduction of mechanical stimulus during perception of touch|up regulation of perception of touch, sensory detection of mechanical stimulus|up regulation of tactition, sensory detection of mechanical stimulus|up-regulation of tactition, sensory detection of mechanical stimulus|up-regulation of perception of touch, sensory detection of mechanical stimulus|activation of tactition, sensory detection of mechanical stimulus|activation of perception of touch, sensory detection of mechanical stimulus|activation of perception of touch, sensory transduction of mechanical stimulus|upregulation of perception of touch, sensory transduction of mechanical stimulus|activation of sensory detection of mechanical stimulus during perception of touch|up-regulation of detection of mechanical stimulus involved in sensory perception of touch|up-regulation of sensory detection of mechanical stimulus during perception of touch|upregulation of detection of mechanical stimulus involved in sensory perception of touch|up regulation of sensory transduction of mechanical stimulus during perception of touch|activation of sensory transduction of mechanical stimulus during perception of touch|upregulation of sensory transduction of mechanical stimulus during perception of touch|activation of perception of touch, detection of mechanical stimulus|positive regulation of tactition, sensory detection of mechanical stimulus|up-regulation of sensory transduction of mechanical stimulus during perception of touch|positive regulation of sensory detection of mechanical stimulus during perception of touch|upregulation of sensory detection of mechanical stimulus during perception of touch|upregulation of perception of touch, detection of mechanical stimulus hbye 2017-01-09T15:11:23Z biological_process owl:Class GO:1990709 biolink:NamedThing presynaptic active zone organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a presynaptic active zone. tmpzr1t_l9r_go_relaxed.owl presynaptic active zone organisation pr 2015-03-20T10:16:24Z biological_process owl:Class GO:2000852 biolink:NamedThing regulation of corticosterone secretion Any process that modulates the frequency, rate or extent of corticosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:45:40Z biological_process owl:Class GO:1903919 biolink:NamedThing negative regulation of actin filament severing Any process that stops, prevents or reduces the frequency, rate or extent of actin filament severing. tmpzr1t_l9r_go_relaxed.owl downregulation of F-actin severing|negative regulation of barbed-end actin capping/severing activity|inhibition of actin filament severing activity|down-regulation of barbed-end actin capping/severing activity|down-regulation of F-actin severing|down regulation of actin filament severing activity|inhibition of actin filament severing|negative regulation of actin filament severing activity|negative regulation of F-actin severing|down regulation of F-actin severing|downregulation of barbed-end actin capping/severing activity|inhibition of F-actin severing|down-regulation of actin filament severing|downregulation of actin filament severing activity|down-regulation of actin filament severing activity|downregulation of actin filament severing|inhibition of barbed-end actin capping/severing activity|down regulation of barbed-end actin capping/severing activity|down regulation of actin filament severing als 2015-02-10T11:01:31Z biological_process owl:Class GO:1903918 biolink:NamedThing regulation of actin filament severing Any process that modulates the frequency, rate or extent of actin filament severing. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament severing activity|regulation of F-actin severing|regulation of barbed-end actin capping/severing activity als 2015-02-10T11:01:21Z biological_process owl:Class GO:0003394 biolink:NamedThing cell adhesion involved in dendrite retrograde extension The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix that contributes to the process of retrograde extension of a dendrite. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:42:09Z biological_process owl:Class GO:0007155 biolink:NamedThing cell adhesion The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. tmpzr1t_l9r_go_relaxed.owl single organism cell adhesion|cell adhesion molecule activity Wikipedia:Cell_adhesion dos 2014-04-15T15:59:10Z GO:0098602 biological_process owl:Class GO:1990059 biolink:NamedThing fruit valve development The process whose specific outcome is the progression of the fruit valve over time, from its formation to the mature structure. The fruit valve is a part of a fruit that splits apart when the fruit dehisces. tmpzr1t_l9r_go_relaxed.owl dhl 2013-03-12T21:21:15Z biological_process owl:Class GO:0061807 biolink:NamedThing positive regulation of DNA recombination at centromere Any process that activates or increases the frequency, rate or extent of DNA recombination at the centromere. tmpzr1t_l9r_go_relaxed.owl positive regulation of centromeric recombination dph 2016-11-10T15:20:04Z biological_process owl:Class GO:0045911 biolink:NamedThing positive regulation of DNA recombination Any process that activates or increases the frequency, rate or extent of DNA recombination. tmpzr1t_l9r_go_relaxed.owl activation of DNA recombination|upregulation of DNA recombination|up-regulation of DNA recombination|up regulation of DNA recombination|stimulation of DNA recombination biological_process owl:Class GO:0022019 biolink:NamedThing dorsal lateral ganglionic eminence cell proliferation The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the expansion of the cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061522 biolink:NamedThing 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity Catalysis of the reaction 1,4-dihydroxy-2-naphthoyl-CoA + H2O = 1,4-dihydroxy-2-naphthoate + CoA. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T14:37:32Z molecular_function owl:Class GO:1990938 biolink:NamedThing peptidyl-aspartic acid autophosphorylation The phosphorylation by a protein of one or more of its own aspartate amino acid residues, or an aspartate residue on an identical protein. tmpzr1t_l9r_go_relaxed.owl peptidyl-aspartate autophosphorylation|aspartyl autophosphorylation bf 2016-04-04T10:49:53Z biological_process owl:Class GO:1905796 biolink:NamedThing regulation of intraciliary anterograde transport Any process that modulates the frequency, rate or extent of intraciliary anterograde transport. tmpzr1t_l9r_go_relaxed.owl regulation of intraflagellar anterograde transport hbye 2017-01-11T12:55:35Z biological_process owl:Class GO:0097507 biolink:NamedThing hypoxanthine DNA N-glycosylase activity DNA N-glycosylase activity acting on deaminated adenine (hypoxanthine). tmpzr1t_l9r_go_relaxed.owl hypoxanthine-DNA glycosylase activity pr 2013-09-26T16:02:08Z molecular_function owl:Class GO:0110146 biolink:NamedThing magnetosome membrane The lipid bilayer surrounding a magnetosome. tmpzr1t_l9r_go_relaxed.owl kmv 2019-05-30T17:51:09Z cellular_component owl:Class GO:0043236 biolink:NamedThing laminin binding Binding to a laminin, a major glycoprotein constituent of the basement membrane of cells. tmpzr1t_l9r_go_relaxed.owl laminin-4 binding|laminin-2 binding GO:0043238|GO:0043239 molecular_function owl:Class GO:0042812 biolink:NamedThing pheromone catabolic process The chemical reactions and pathways resulting in the breakdown of pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process. tmpzr1t_l9r_go_relaxed.owl pheromone degradation|pheromone catabolism|pheromone breakdown GO:0046614|GO:0007327 biological_process owl:Class GO:0021841 biolink:NamedThing chemoattraction involved in interneuron migration from the subpallium to the cortex The creation and reception of signals that result in the movement of interneurons toward the signal, where this process is involved in migration from the subpallium to the cortex. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis involved in interneuron migration from the subpallium to the cortex biological_process owl:Class GO:0016081 biolink:NamedThing synaptic vesicle docking The initial (indirect) attachment of a synaptic vesicle membrane to the presynaptic active zone membrane, mediated by proteins protruding from the membrane and proteins of the presynaptic active zone cytoplasmic component. Synaptic vesicle tethering is the first step in this process. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle docking involved in exocytosis|synaptic vesicle docking during exocytosis Although this process can occur outside of synaptic transmission, by convention we treat it as a part of synaptic transmission (dos, pvn, fk synapse project 2015). biological_process owl:Class GO:0006904 biolink:NamedThing vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. tmpzr1t_l9r_go_relaxed.owl vesicle docking during exocytosis biological_process owl:Class GO:0072130 biolink:NamedThing renal capsule specification The regionalization process in which the identity of the renal capsule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:12:34Z biological_process owl:Class GO:0097029 biolink:NamedThing mature conventional dendritic cell differentiation The process in which antigen-activated dendritic cells acquire the specialized features of a mature conventional dendritic cell. Mature conventional dendritic cells upregulate the surface expression of MHC molecules, chemokine receptors and adhesion molecules, and increase the number of dendrites (cytoplasmic protrusions) in preparation for migration to lymphoid organs where they present antigen to T cells. tmpzr1t_l9r_go_relaxed.owl Note that immunologists typically use the word 'maturation' to refer to dendritic cells undergoing the process that GO describes as 'cell differentiation'. pr 2011-04-01T10:10:22Z biological_process owl:Class GO:0046098 biolink:NamedThing guanine metabolic process The chemical reactions and pathways involving guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important. tmpzr1t_l9r_go_relaxed.owl guanine metabolism biological_process owl:Class GO:0140635 biolink:NamedThing neutrophil dispersal The movement of a neutrophil away from the site of wound or infection following its initial migration to the site. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21081 pg 2021-04-13T07:06:25Z biological_process owl:Class GO:0050155 biolink:NamedThing ornithine(lysine) transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-ornithine = H2O + L-glutamate + 3,4-dihydro-2H-pyrrole-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl lysine/ornithine:2-oxoglutarate aminotransferase activity|ornithine(lysine) aminotransferase activity|L-ornithine:2-oxoglutarate-aminotransferase activity|L-ornithine(L-lysine):2-oxoglutarate-aminotransferase activity EC:2.6.1.13|MetaCyc:ORNITHINELYSINE-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0010630 biolink:NamedThing regulation of transcription, start site selection Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA by a mechanism that selects the start site along that template. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048767 biolink:NamedThing root hair elongation The process in which the root hair grows longer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901943 biolink:NamedThing (+)-epi-alpha-bisabolol biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-epi-alpha-bisabolol. tmpzr1t_l9r_go_relaxed.owl (+)-epi-alpha-bisabolol synthesis|(+)-epi-alpha-bisabolol biosynthesis|(+)-epi-alpha-bisabolol anabolism|(+)-epi-alpha-bisabolol formation ms 2013-02-18T14:55:46Z biological_process owl:Class GO:0033910 biolink:NamedThing glucan 1,4-alpha-maltotetraohydrolase activity Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in amylaceous polysaccharides, to remove successive maltotetraose residues from the non-reducing chain ends. tmpzr1t_l9r_go_relaxed.owl glucan 1,4-alpha-maltotetrahydrolase activity|G4-amylase activity|maltotetraose-forming amylase activity|1,4-alpha-D-glucan maltotetraohydrolase activity|exo-maltotetraohydrolase activity EC:3.2.1.60|MetaCyc:3.2.1.60-RXN molecular_function owl:Class GO:0047828 biolink:NamedThing D-lyxose ketol-isomerase activity Catalysis of the reaction: D-lyxose = D-xylulose. tmpzr1t_l9r_go_relaxed.owl D-lyxose isomerase activity|D-lyxose aldose-ketose-isomerase activity RHEA:14201|KEGG_REACTION:R01898|MetaCyc:D-LYXOSE-KETOL-ISOMERASE-RXN|EC:5.3.1.15 molecular_function owl:Class GO:0042960 biolink:NamedThing antimonite secondary active transmembrane transporter activity Enables the transfer of antimonite from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl antimonite porter activity molecular_function owl:Class GO:0034607 biolink:NamedThing turning behavior involved in mating The sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail. tmpzr1t_l9r_go_relaxed.owl turning behavior during mating biological_process owl:Class GO:0061974 biolink:NamedThing perichondral bone morphogenesis The process in which bones are generated and organized as a result of the conversion of initial connective tissue surrounding cartilage into bone. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T18:26:10Z biological_process owl:Class GO:1904604 biolink:NamedThing negative regulation of advanced glycation end-product receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of advanced glycation end-product receptor activity. tmpzr1t_l9r_go_relaxed.owl inhibition of advanced glycation end-product receptor activity|downregulation of RAGE activity|down regulation of AGE receptor activity|down-regulation of AGE receptor activity|down regulation of advanced glycation end-product receptor activity|inhibition of AGE receptor activity|down-regulation of RAGE activity|downregulation of AGE receptor activity|down-regulation of advanced glycation end-product receptor activity|negative regulation of RAGE activity|negative regulation of AGE receptor activity|down regulation of RAGE activity|inhibition of RAGE activity|downregulation of advanced glycation end-product receptor activity krc 2015-08-26T16:24:56Z biological_process owl:Class GO:1905290 biolink:NamedThing negative regulation of CAMKK-AMPK signaling cascade Any process that stops, prevents or reduces the frequency, rate or extent of CAMKK-AMPK signaling cascade. tmpzr1t_l9r_go_relaxed.owl down regulation of CAMKK-AMPK signaling cascade|downregulation of CAMKK-AMPK signaling cascade|negative regulation of stress-activated AMP-activated protein kinase signaling cascade|inhibition of stress-activated AMP-activated protein kinase signaling cascade|down-regulation of CAMKK-AMPK signaling cascade|down regulation of stress-activated AMP-activated protein kinase signaling cascade|down-regulation of stress-activated AMP-activated protein kinase signaling cascade|inhibition of CAMKK-AMPK signaling cascade|downregulation of stress-activated AMP-activated protein kinase signaling cascade sl 2016-06-23T20:37:03Z biological_process owl:Class GO:0036387 biolink:NamedThing pre-replicative complex A protein-DNA complex that forms at the origin of replication during the initial step of DNA replication and allows the origin to become competent, or 'licensed', for replication. tmpzr1t_l9r_go_relaxed.owl pre-RC|pre-replication complex This term describes pre-replicative complexes across organisms. bf 2013-06-05T16:14:52Z cellular_component owl:Class GO:1905394 biolink:NamedThing retromer complex binding Binding to a retromer complex. tmpzr1t_l9r_go_relaxed.owl bc 2016-08-24T14:00:32Z molecular_function owl:Class GO:0005594 biolink:NamedThing collagen type IX trimer A collagen heterotrimer containing type IX alpha chains in alpha1(IX)alpha2(IX)alpha3(IX) trimers; type IX collagen triple helices associate to form a structure that links glycosaminoglycans to type II collagen fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002049 biolink:NamedThing pyoverdine biosynthetic process The chemical reactions and pathways resulting in the formation of the siderochrome pyoverdine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901180 biolink:NamedThing spheroidene biosynthetic process The chemical reactions and pathways resulting in the formation of spheroidene. tmpzr1t_l9r_go_relaxed.owl spheroidene synthesis|spheroidene biosynthesis|spheroidene formation|spheroidene anabolism yaf 2012-07-19T09:49:22Z biological_process owl:Class GO:0043067 biolink:NamedThing regulation of programmed cell death Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. tmpzr1t_l9r_go_relaxed.owl regulation of non-apoptotic programmed cell death GO:0043070 biological_process owl:Class GO:1990648 biolink:NamedThing inositol-4,5,6-triphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 4,5,6-trisphosphate + H2O = 1D-myo-inositol 4,6-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2015-02-23T11:10:51Z molecular_function owl:Class GO:0046030 biolink:NamedThing inositol trisphosphate phosphatase activity Catalysis of the reaction: myo-inositol trisphosphate + H2O = myo-inositol bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl IP(3) phosphatase activity|IP3 phosphatase activity|inositol-1,4,5-trisphosphate phosphatase molecular_function owl:Class GO:1900964 biolink:NamedThing positive regulation of methanophenazine biosynthetic process Any process that activates or increases the frequency, rate or extent of methanophenazine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of methanophenazine formation|upregulation of methanophenazine anabolism|activation of methanophenazine anabolism|up regulation of methanophenazine synthesis|activation of methanophenazine synthesis|positive regulation of methanophenazine synthesis|up-regulation of methanophenazine formation|upregulation of methanophenazine biosynthetic process|up-regulation of methanophenazine anabolism|upregulation of methanophenazine synthesis|activation of methanophenazine biosynthetic process|up-regulation of methanophenazine biosynthesis|upregulation of methanophenazine formation|positive regulation of methanophenazine biosynthesis|activation of methanophenazine biosynthesis|up regulation of methanophenazine biosynthetic process|up-regulation of methanophenazine biosynthetic process|up regulation of methanophenazine biosynthesis|upregulation of methanophenazine biosynthesis|activation of methanophenazine formation|up regulation of methanophenazine formation|positive regulation of methanophenazine anabolism|up regulation of methanophenazine anabolism|up-regulation of methanophenazine synthesis tt 2012-06-14T03:53:46Z biological_process owl:Class GO:0018747 biolink:NamedThing phenanthrene-1,2-epoxide hydrolase activity Catalysis of the reaction: phenanthrene-1,2-oxide + H2O = trans-1,2-dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0536 molecular_function owl:Class GO:0042583 biolink:NamedThing chromaffin granule Specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004073 biolink:NamedThing aspartate-semialdehyde dehydrogenase activity Catalysis of the reaction: L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl aspartate semialdehyde dehydrogenase activity|ASA dehydrogenase activity|aspartic semialdehyde dehydrogenase activity|L-aspartate-beta-semialdehyde:NADP oxidoreductase (phosporylating)|aspartic beta-semialdehyde dehydrogenase activity|L-aspartate-beta-semialdehyde dehydrogenase activity|L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating) EC:1.2.1.11|MetaCyc:ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|KEGG_REACTION:R02291|RHEA:24284 molecular_function owl:Class GO:0001879 biolink:NamedThing detection of yeast The series of events in which a stimulus from a yeast is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001878 biolink:NamedThing response to yeast Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a yeast species. tmpzr1t_l9r_go_relaxed.owl defined as response to Saccharomycotina (true yeasts). This excludes fission yeast. biological_process owl:Class GO:0034094 biolink:NamedThing regulation of maintenance of meiotic sister chromatid cohesion Any process that modulates the extent to which the association between sister chromatids of a replicated chromosome is maintained during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901299 biolink:NamedThing negative regulation of hydrogen peroxide-mediated programmed cell death Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death. tmpzr1t_l9r_go_relaxed.owl down-regulation of hydrogen peroxide-mediated programmed cell death|down regulation of hydrogen peroxide-mediated programmed cell death|downregulation of hydrogen peroxide-mediated programmed cell death|inhibition of hydrogen peroxide-mediated programmed cell death vk 2012-08-21T09:45:21Z biological_process owl:Class GO:0034876 biolink:NamedThing isonicotinic acid hydrazide hydrolase activity Catalysis of the reaction: isoniazid + H2O = isonicotinate + hydrazine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1336 molecular_function owl:Class GO:1900284 biolink:NamedThing positive regulation of cellobiose catabolic process Any process that activates or increases the frequency, rate or extent of cellobiose catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of cellobiose catabolic process|positive regulation of cellobiose catabolism|upregulation of cellobiose catabolism|activation of cellobiose catabolism|up regulation of cellobiose catabolism|up-regulation of cellobiose catabolic process|up regulation of cellobiose catabolic process|upregulation of cellobiose catabolic process|up-regulation of cellobiose catabolism tt 2012-04-05T12:29:09Z biological_process owl:Class GO:1900644 biolink:NamedThing negative regulation of chanoclavine-I biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of chanoclavine-I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of chanoclavine-I formation|down regulation of chanoclavine-I synthesis|down-regulation of chanoclavine-I synthesis|downregulation of chanoclavine-I biosynthetic process|negative regulation of chanoclavine-I anabolism|inhibition of chanoclavine-I synthesis|downregulation of chanoclavine-I formation|inhibition of chanoclavine-I biosynthesis|negative regulation of chanoclavine-I synthesis|down-regulation of chanoclavine-I biosynthesis|negative regulation of chanoclavine-I biosynthesis|down-regulation of chanoclavine-I biosynthetic process|downregulation of chanoclavine-I synthesis|down-regulation of chanoclavine-I anabolism|down regulation of chanoclavine-I anabolism|down regulation of chanoclavine-I biosynthetic process|downregulation of chanoclavine-I biosynthesis|down-regulation of chanoclavine-I formation|inhibition of chanoclavine-I formation|down regulation of chanoclavine-I biosynthesis|negative regulation of chanoclavine-I formation|downregulation of chanoclavine-I anabolism|inhibition of chanoclavine-I anabolism|inhibition of chanoclavine-I biosynthetic process di 2012-05-22T04:03:30Z biological_process owl:Class GO:0010840 biolink:NamedThing regulation of circadian sleep/wake cycle, wakefulness Any process that modulates the rate, frequency, or extent of the wakeful phase of the circadian sleep/wake cycle. The wakeful phase is the part of the circadian sleep/wake cycle where the organism is not asleep. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070329 biolink:NamedThing tRNA seleno-modification The substitution of a selenium atom for a sulfur atom in a ribonucleotide in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl tRNA base modification to selenouridine biological_process owl:Class GO:0102499 biolink:NamedThing SHG alpha-glucan phosphorylase activity Catalysis of the reaction: hydrogenphosphate + a plant soluble heteroglycan = alpha-D-glucose 1-phosphate + a plant soluble heteroglycan. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14353|RHEA:41732|EC:2.4.1.1 molecular_function owl:Class GO:0033789 biolink:NamedThing phenylacetyl-CoA dehydrogenase activity Catalysis of the reaction: 2 1,4-benzoquinone + H(2)O + phenylacetyl-CoA = 2 hydroquinone + phenylglyoxylyl-CoA. tmpzr1t_l9r_go_relaxed.owl phenylacetyl-CoA:quinone oxidoreductase activity|phenylacetyl-CoA:acceptor oxidoreductase activity MetaCyc:1.17.5.1-RXN|EC:1.17.5.1|KEGG_REACTION:R07222|RHEA:15705 molecular_function owl:Class GO:1901468 biolink:NamedThing positive regulation of ferulate catabolic process Any process that activates or increases the frequency, rate or extent of ferulate catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of ferulate breakdown|up-regulation of ferulate catabolic process|upregulation of ferulate degradation|up regulation of ferulate catabolism|upregulation of ferulate breakdown|up regulation of ferulate degradation|upregulation of ferulate catabolism|upregulation of ferulate catabolic process|up-regulation of ferulate breakdown|activation of ferulate catabolic process|up regulation of ferulate catabolic process|positive regulation of ferulate breakdown|activation of ferulate catabolism|activation of ferulate degradation|up regulation of ferulate breakdown|up-regulation of ferulate catabolism|up-regulation of ferulate degradation|positive regulation of ferulate catabolism|positive regulation of ferulate degradation tt 2012-10-02T14:38:56Z biological_process owl:Class GO:0010511 biolink:NamedThing regulation of phosphatidylinositol biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008411 biolink:NamedThing 4-hydroxybutyrate CoA-transferase activity Catalysis of the transfer of a coenzyme A (CoA) group to 4-hydroxybutyrate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098821 biolink:NamedThing BMP receptor activity Combining with a member of the bone morphogenetic protein (BMP) family, and transmitting a signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004675 biolink:NamedThing transmembrane receptor protein serine/threonine kinase activity Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl receptor serine/threonine protein kinase activity|receptor protein serine/threonine kinase activity EC:2.7.11.30|RHEA:18673|Reactome:R-HSA-170868|Reactome:R-HSA-201476|Reactome:R-HSA-198732|MetaCyc:2.7.11.30-RXN molecular_function owl:Class GO:0050647 biolink:NamedThing 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding Binding to 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. tmpzr1t_l9r_go_relaxed.owl 5-hydroxy-6E,8Z,11Z,14Z-eicosatetraenoic acid binding molecular_function owl:Class GO:2000467 biolink:NamedThing positive regulation of glycogen (starch) synthase activity Any process that activates or increases the frequency, rate or extent of glycogen (starch) synthase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of UDP-glucose-glycogen glucosyltransferase activity|positive regulation of UDPG-glycogen transglucosylase activity|positive regulation of uridine diphosphoglucose-glycogen glucosyltransferase activity|positive regulation of UDP-glucose:glycogen 4-alpha-D-glucosyltransferase activity|positive regulation of UDPglucose:glycogen 4-alpha-D-glucosyltransferase activity|positive regulation of UDP-glycogen synthase activity|positive regulation of UDPG-glycogen synthetase activity|positive regulation of glycogen (starch) synthetase activity yaf 2011-03-07T04:13:41Z biological_process owl:Class GO:0031055 biolink:NamedThing chromatin remodeling at centromere Dynamic structural changes in centromeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005757 biolink:NamedThing mitochondrial permeability transition pore complex A protein complex that connects the inner and outer membranes of animal mitochondria and acts as a pore that can open transiently to allow free diffusion of solutes between the mitochondrial matrix and the cytosol. The pore complex is formed of the voltage-dependent anion channel (VDAC), the adenine nucleotide translocase (ANT) and cyclophilin-D (CyP-D). tmpzr1t_l9r_go_relaxed.owl PTPC|MPTP complex|mitochondrial PT pore complex cellular_component owl:Class GO:1904959 biolink:NamedThing regulation of cytochrome-c oxidase activity Any process that modulates the frequency, rate or extent of cytochrome-c oxidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of cbb3-type cytochrome c oxidase|regulation of caa3-type cytochrome c oxidase|regulation of NADH cytochrome c oxidase|regulation of ferrocytochrome-c:oxygen oxidoreductase|regulation of complex IV (mitochondrial electron transport) activity|regulation of cytochrome oxidase activity|regulation of ferrocytochrome c oxidase|regulation of cytochrome c oxidase activity|regulation of indophenol oxidase|regulation of aa3-type cytochrome c oxidase|regulation of indophenolase|regulation of ba3-type cytochrome c oxidase|regulation of cytochrome aa3 activity|regulation of warburg's respiratory enzyme activity|regulation of cytochrome a3 activity tb 2016-02-09T22:18:27Z biological_process owl:Class GO:1901233 biolink:NamedThing negative regulation of convergent extension involved in axis elongation Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in axis elongation. tmpzr1t_l9r_go_relaxed.owl down regulation of convergent extension involved in axis elongation|downregulation of convergent extension involved in axis elongation|down-regulation of convergent extension involved in axis elongation|inhibition of convergent extension involved in axis elongation vk 2012-08-07T14:22:11Z biological_process owl:Class GO:1902163 biolink:NamedThing negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator Any process that stops, prevents or reduces the frequency, rate or extent of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. tmpzr1t_l9r_go_relaxed.owl inhibition of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|downregulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|down-regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|down regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator lb 2013-05-22T12:39:23Z biological_process owl:Class GO:0035964 biolink:NamedThing COPI-coated vesicle budding The evagination of a Golgi membrane, resulting in formation of a COPI-coated vesicle. tmpzr1t_l9r_go_relaxed.owl COPI vesicle budding bf 2011-08-01T11:32:23Z biological_process owl:Class GO:0051866 biolink:NamedThing general adaptation syndrome General adaptation syndrome is the set of changes in various organ systems of the body, especially the pituitary-endocrine system, in response to a wide range of strong external stimuli, both physiological and psychological. It is described as having three stages: alarm reaction, where the body detects the external stimulus; adaptation, where the body engages defensive countermeasures against the stressor; and exhaustion, where the body begins to run out of defenses. tmpzr1t_l9r_go_relaxed.owl general adaptation syndrome, physiological process|general adaptation syndrome, physiological response|physiological response during general adaptation syndrome|physiological process during general adaptation syndrome GO:0051868 biological_process owl:Class GO:0033555 biolink:NamedThing multicellular organismal response to stress Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038165 biolink:NamedThing oncostatin-M-mediated signaling pathway A series of molecular signals initiated by the binding of oncostatin-M (OSM) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. OSM can signal via at least two different receptors (a specific receptor and a LIF receptor) to activate different downstream signal transduction pathways. tmpzr1t_l9r_go_relaxed.owl OSM signaling pathway|oncostatin-M signaling pathway bf 2012-05-14T02:54:30Z biological_process owl:Class GO:0071609 biolink:NamedThing chemokine (C-C motif) ligand 5 production The appearance of chemokine (C-C motif) ligand 5 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL5 production|RANTES production|Regulated upon Activation, Normal T-cell Expressed, and Secreted production mah 2010-02-05T04:32:35Z biological_process owl:Class GO:0042637 biolink:NamedThing catagen The regression phase of the hair cycle during which cell proliferation ceases, the hair follicle shortens, and an anchored club hair is produced. tmpzr1t_l9r_go_relaxed.owl hair regression Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0044851 biolink:NamedThing hair cycle phase The cyclical periods of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). jl 2014-07-16T14:22:09Z biological_process owl:Class GO:0072004 biolink:NamedThing kidney field specification The process that results in the delineation of regions of the embryo into the area in which the kidney rudiment will develop. tmpzr1t_l9r_go_relaxed.owl specification of kidney anlage mah 2010-01-25T11:24:33Z biological_process owl:Class GO:0033284 biolink:NamedThing ATPase-coupled carboxylic acid transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + carboxylic acid(out/in) = ADP + phosphate + carboxylic acid(in/out). tmpzr1t_l9r_go_relaxed.owl carboxylic acid-transporting ATPase activity|ATP-dependent carboxylic acid transporter activity molecular_function owl:Class GO:1903075 biolink:NamedThing pyridoxine import across plasma membrane The directed movement of pyridoxine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pyridoxine import into cell mah 2014-05-29T15:04:14Z biological_process owl:Class GO:1904117 biolink:NamedThing cellular response to vasopressin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vasopressin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-04-06T19:39:48Z biological_process owl:Class GO:0003428 biolink:NamedThing chondrocyte intercalation involved in growth plate cartilage morphogenesis The orderly movement of a chondrocyte from one site to another that contributes to the shaping of growth plate cartilage in an endochondral bone. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T11:52:32Z biological_process owl:Class GO:0097639 biolink:NamedThing L-lysine import across plasma membrane The directed movement of L-lysine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-lysine import into cell pr 2014-09-03T09:32:57Z GO:1903410 biological_process owl:Class GO:1902272 biolink:NamedThing regulation of (R)-carnitine transmembrane transport Any process that modulates the frequency, rate or extent of (R)-carnitine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl mcc 2013-07-01T13:13:11Z biological_process owl:Class GO:0033312 biolink:NamedThing chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a. tmpzr1t_l9r_go_relaxed.owl chlorophyll a synthesis via geranylgeranyl-chlorophyll a|chlorophyll a anabolism via geranylgeranyl-chlorophyll a|chlorophyll a formation via geranylgeranyl-chlorophyll a|chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a MetaCyc:PWY-5064 biological_process owl:Class GO:0018819 biolink:NamedThing lactoyl-CoA dehydratase activity Catalysis of the reaction: lactoyl-CoA = acryloyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl lactyl-coenzyme A dehydrase activity|acrylyl coenzyme A hydratase activity|lactyl CoA dehydratase activity|lactoyl-CoA hydro-lyase activity|lactoyl coenzyme A dehydratase activity|lactoyl-CoA hydro-lyase (acryloyl-CoA-forming) MetaCyc:RXN-781|RHEA:21056|EC:4.2.1.54|UM-BBD_reactionID:r0086|MetaCyc:LACTOYL-COA-DEHYDRATASE-RXN molecular_function owl:Class GO:0019061 biolink:NamedThing uncoating of virus The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome. tmpzr1t_l9r_go_relaxed.owl viral uncoating biological_process owl:Class GO:0002037 biolink:NamedThing negative regulation of L-glutamate import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-glutamate import into a cell. tmpzr1t_l9r_go_relaxed.owl down regulation of L-glutamate uptake|negative regulation of L-glutamate transport|negative regulation of L-glutamate import|inhibition of L-glutamate uptake|down regulation of L-glutamate transport|down regulation of L-glutamate import|inhibition of L-glutamate import|downregulation of L-glutamate transport|regulation of L-glutamate import|negative regulation of L-glutamate uptake|down-regulation of L-glutamate uptake|inhibition of L-glutamate transport|downregulation of L-glutamate import|downregulation of L-glutamate uptake|down-regulation of L-glutamate transport|down-regulation of L-glutamate import al 2012-06-13T07:34:30Z GO:1900921 biological_process owl:Class GO:0048632 biolink:NamedThing negative regulation of skeletal muscle tissue growth Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle growth. tmpzr1t_l9r_go_relaxed.owl downregulation of skeletal muscle growth|inhibition of skeletal muscle growth|down regulation of skeletal muscle growth|down-regulation of skeletal muscle growth biological_process owl:Class GO:0009087 biolink:NamedThing methionine catabolic process The chemical reactions and pathways resulting in the breakdown of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl methionine degradation|methionine breakdown|methionine catabolism UM-BBD_pathwayID:met biological_process owl:Class GO:0047967 biolink:NamedThing glycyrrhizinate beta-glucuronidase activity Catalysis of the reaction: glycyrrhizate + H(2)O = 2-(beta-D-glucuronosyl)-D-glucuronate + glycyrrhetinate. tmpzr1t_l9r_go_relaxed.owl glycyrrhizin beta-hydrolase activity|glycyrrhizin hydrolase activity|glycyrrhizinic acid hydrolase activity|glycyrrhizinate b-glucuronidase activity|glycyrrhizinate glucuronosylhydrolase activity MetaCyc:GLYCYRRHIZINATE-BETA-GLUCURONIDASE-RXN|KEGG_REACTION:R03906|EC:3.2.1.128|RHEA:17369 molecular_function owl:Class GO:1901246 biolink:NamedThing regulation of lung ciliated cell differentiation Any process that modulates the frequency, rate or extent of lung ciliated cell differentiation. tmpzr1t_l9r_go_relaxed.owl vk 2012-08-08T08:58:34Z biological_process owl:Class GO:1904874 biolink:NamedThing positive regulation of telomerase RNA localization to Cajal body Any process that activates or increases the frequency, rate or extent of telomerase RNA localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl up-regulation of telomerase RNA localization to Cajal body|upregulation of telomerase RNA localization to Cajal body|activation of telomerase RNA localization to Cajal body|up regulation of telomerase RNA localization to Cajal body nc 2015-12-18T11:28:34Z biological_process owl:Class GO:0043466 biolink:NamedThing pyrimidine nucleobase fermentation The anaerobic conversion of pyrimidine nucleobases, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl pyrimidine fermentation|pyrimidine base fermentation biological_process owl:Class GO:1904471 biolink:NamedThing negative regulation of endothelin production Any process that stops, prevents or reduces the frequency, rate or extent of endothelin production. tmpzr1t_l9r_go_relaxed.owl down regulation of EDN2 secretion|downregulation of endothelin-2 secretion|downregulation of EDN3 secretion|down regulation of endothelin secretion|downregulation of endothelin secretion|down regulation of EDN1 secretion|down regulation of EDN3 secretion|inhibition of EDN2 secretion|down-regulation of endothelin-3 secretion|inhibition of endothelin-2 secretion|negative regulation of EDN2 secretion|negative regulation of endothelin-2 secretion|inhibition of EDN3 secretion|down-regulation of EDN2 secretion|down-regulation of endothelin-1 secretion|down regulation of endothelin-2 secretion|down regulation of endothelin-1 secretion|down-regulation of EDN1 secretion|negative regulation of endothelin-1 secretion|down regulation of endothelin-3 secretion|down-regulation of endothelin secretion|inhibition of EDN1 secretion|inhibition of endothelin-3 secretion|negative regulation of endothelin secretion|downregulation of endothelin-3 secretion|negative regulation of EDN1 secretion|inhibition of endothelin-1 secretion|downregulation of EDN2 secretion|negative regulation of endothelin-3 secretion|inhibition of endothelin secretion|negative regulation of EDN3 secretion|downregulation of endothelin-1 secretion|down-regulation of EDN3 secretion|downregulation of EDN1 secretion|down-regulation of endothelin-2 secretion sl 2015-07-09T19:58:03Z biological_process owl:Class GO:0034497 biolink:NamedThing protein localization to phagophore assembly site Any process in which a protein is transported to, or maintained at, the phagophore assembly site (PAS). tmpzr1t_l9r_go_relaxed.owl protein localization to PAS|protein localization to pre-autophagosomal structure|protein localisation to phagophore assembly site biological_process owl:Class GO:0014912 biolink:NamedThing negative regulation of smooth muscle cell migration Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000149 biolink:NamedThing negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in ventricular septum morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T07:09:53Z biological_process owl:Class GO:2000148 biolink:NamedThing regulation of planar cell polarity pathway involved in ventricular septum morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in ventricular septum morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T07:09:49Z biological_process owl:Class GO:0046244 biolink:NamedThing salicylic acid catabolic process The chemical reactions and pathways resulting in the breakdown of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. tmpzr1t_l9r_go_relaxed.owl salicylic acid catabolism|salicylic acid breakdown|salicylic acid degradation biological_process owl:Class GO:0034056 biolink:NamedThing estrogen response element binding Binding to an estrogen response element (ERE), a conserved sequence found in the promoters of genes whose expression is regulated in response to estrogen. tmpzr1t_l9r_go_relaxed.owl ERE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. molecular_function owl:Class GO:0120175 biolink:NamedThing regulation of torso signaling pathway Any process that modulates the frequency, rate or extent of the torso signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-06-07T16:47:42Z biological_process owl:Class GO:0045613 biolink:NamedThing regulation of plasmatocyte differentiation Any process that modulates the frequency, rate or extent of plasmatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034052 biolink:NamedThing positive regulation of plant-type hypersensitive response Any process that activates or increases the frequency, rate or extent of the hypersensitive response in a plant. tmpzr1t_l9r_go_relaxed.owl positive regulation of HR-PCD|activation of plant-type hypersensitive response|up-regulation of plant-type hypersensitive response|upregulation of plant-type hypersensitive response|positive regulation of HR|positive regulation of plant hypersensitive response|up regulation of plant-type hypersensitive response|stimulation of plant-type hypersensitive response biological_process owl:Class GO:0019350 biolink:NamedThing teichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues. tmpzr1t_l9r_go_relaxed.owl teichoic acid biosynthesis|teichoic acid synthesis|teichoic acid formation|teichoic acid anabolism MetaCyc:TEICHOICACID-PWY biological_process owl:Class GO:0010314 biolink:NamedThing phosphatidylinositol-5-phosphate binding Binding to phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090234 biolink:NamedThing regulation of kinetochore assembly Any process that modulates the rate, frequency, or extent of kinetochore assembly, the aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. tmpzr1t_l9r_go_relaxed.owl regulation of chromosome-kinetochore attachment tb 2010-01-20T10:46:56Z biological_process owl:Class GO:0021710 biolink:NamedThing cerebellar stellate cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar stellate cell. Differentiation includes the processes involved in commitment of a neuroblast to a cerebellar stellate cell fate. A cerebellar stellate cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904900 biolink:NamedThing negative regulation of myosin II filament organization Any process that stops, prevents or reduces the frequency, rate or extent of myosin II filament organization. tmpzr1t_l9r_go_relaxed.owl downregulation of myosin II filament organisation|down-regulation of myosin II filament assembly or disassembly|down-regulation of myosin II polymerization or depolymerization|negative regulation of myosin II filament assembly or disassembly|down regulation of myosin II filament assembly or disassembly|inhibition of myosin II filament assembly or disassembly|inhibition of myosin II polymerization or depolymerization|down-regulation of myosin II filament organization|downregulation of myosin II polymerization or depolymerization|down regulation of myosin II polymerization or depolymerization|inhibition of myosin II filament organization|inhibition of myosin II filament organisation|negative regulation of myosin II filament organisation|down regulation of myosin II filament organisation|down regulation of myosin II filament organization|downregulation of myosin II filament assembly or disassembly|down-regulation of myosin II filament organisation|downregulation of myosin II filament organization|negative regulation of myosin II polymerization or depolymerization mec 2016-01-15T09:04:54Z biological_process owl:Class GO:0009452 biolink:NamedThing 7-methylguanosine RNA capping The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent transcript. tmpzr1t_l9r_go_relaxed.owl RNA capping|m(7)G RNA capping biological_process owl:Class GO:0036260 biolink:NamedThing RNA capping The sequence of enzymatic reactions by which a cap structure is added to the 5' end of nascent RNA polymerase transcripts. Examples of RNA capping include 7-methyl-G caps found on all RNA polymerase II transcripts and nucleotide-containing cofactor caps, such as NAD(H) or FAD, found on bacterial trancripts. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-15T02:10:23Z biological_process owl:Class GO:0009254 biolink:NamedThing peptidoglycan turnover The continual breakdown and regeneration of peptidoglycan required to maintain the cell wall. tmpzr1t_l9r_go_relaxed.owl murein turnover GO:0009287 biological_process owl:Class GO:0150038 biolink:NamedThing postsynaptic dense core vesicle exocytosis The secretion of molecules (e.g. neuropeptides, insulin-related peptides or neuromodulators such as serotonin and dopamine) contained within a postsynaptic dense core vesicle by fusion of the granule with the plasma membrane of the postsynapse in response to increased cytosolic calcium levels. tmpzr1t_l9r_go_relaxed.owl bc 2018-04-18T14:32:16Z biological_process owl:Class GO:0099011 biolink:NamedThing neuronal dense core vesicle exocytosis The secretion of molecules (e.g. neuropeptides, insulin-related peptides or neuromodulators such as serotonin and dopamine) contained within a neuronal dense core vesicle by fusion of the granule with the plasma membrane of a neuron in response to increased cytosolic calcium levels. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0001978 biolink:NamedThing regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback The process that modulates blood pressure by sensing the amount of stretch occurring in large arteries and responding to the input via central nervous system control. tmpzr1t_l9r_go_relaxed.owl carotid sinus baroreceptor feedback regulation of systemic arterial blood pressure|baroreceptor feedback control of blood pressure|baroreceptor pressure buffer system biological_process owl:Class GO:0006590 biolink:NamedThing thyroid hormone generation The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones. tmpzr1t_l9r_go_relaxed.owl Note that this term does not fall under the general GO definition for biosynthetic processes, which is 'The chemical reactions and pathways resulting in the formation of... ', because thyroid hormones can only be formed by the proteolysis of a larger molecule (see term definition). The word 'generation' is therefore used in place of biosynthesis. biological_process owl:Class GO:0042333 biolink:NamedThing chemotaxis to oxidizable substrate The directed movement of a motile cell or organism in response to the presence of an oxidizable substrate, for example, fructose. tmpzr1t_l9r_go_relaxed.owl taxis in response to oxidizable substrate biological_process owl:Class GO:1904782 biolink:NamedThing negative regulation of NMDA glutamate receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of NMDA glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl downregulation of NMDA glutamate receptor activity|down-regulation of NMDA receptor|down regulation of NMDA receptor|down-regulation of N-methyl-D-aspartate selective glutamate receptor activity|down regulation of NMDA glutamate receptor activity|negative regulation of N-methyl-D-aspartate selective glutamate receptor activity|inhibition of NMDA receptor|downregulation of N-methyl-D-aspartate selective glutamate receptor activity|down regulation of N-methyl-D-aspartate selective glutamate receptor activity|inhibition of NMDA glutamate receptor activity|downregulation of NMDA receptor|down-regulation of NMDA glutamate receptor activity|inhibition of N-methyl-D-aspartate selective glutamate receptor activity|negative regulation of NMDA receptor mr 2015-10-30T19:39:31Z biological_process owl:Class GO:0005026 biolink:NamedThing transforming growth factor beta receptor activity, type II Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, binds to and catalyzes the phosphorylation of a type I TGF-beta receptor. tmpzr1t_l9r_go_relaxed.owl type II transforming growth factor beta receptor activity|type II TGFbeta receptor activity|type II TGF-beta receptor activity|transforming growth factor beta ligand binding to type II receptor Reactome:R-HSA-170843 molecular_function owl:Class GO:0005024 biolink:NamedThing transforming growth factor beta-activated receptor activity Combining with a transforming growth factor beta (TGFbeta) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor activity|TGFbetaR|TGFbeta receptor activity|TGFbeta-activated receptor activity|TGF-beta receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand TGFbeta. For binding to other growth factors, consider annotating to terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:0042860 biolink:NamedThing achromobactin metabolic process The chemical reactions and pathways involving achromobactin, a citrate siderophore. tmpzr1t_l9r_go_relaxed.owl achromobactin metabolism biological_process owl:Class GO:0035888 biolink:NamedThing isoguanine deaminase activity Catalysis of the reaction: isoguanine + H2O = xanthine + NH3. tmpzr1t_l9r_go_relaxed.owl 2-oxoadenine deaminase activity|2-hydroxyadenine deaminase activity bf 2011-06-14T02:15:53Z molecular_function owl:Class GO:0047784 biolink:NamedThing cortisol O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + cortisol = CoA + cortisol 21-acetate. tmpzr1t_l9r_go_relaxed.owl corticosteroid-21-O-acetyltransferase activity|corticosteroid acetyltransferase activity|cortisol acetyltransferase activity|acetyl-CoA:cortisol O-acetyltransferase activity KEGG_REACTION:R02837|EC:2.3.1.27|RHEA:17073|MetaCyc:CORTISOL-O-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0046306 biolink:NamedThing alkanesulfonate catabolic process The chemical reactions and pathways resulting in the breakdown of alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group. tmpzr1t_l9r_go_relaxed.owl alkanesulphonate catabolic process|alkanesulfonate degradation|alkanesulphonate catabolism|alkanesulfonate catabolism|alkanesulfonate breakdown biological_process owl:Class GO:1905180 biolink:NamedThing positive regulation of cardiac muscle tissue regeneration Any process that activates or increases the frequency, rate or extent of cardiac muscle tissue regeneration. tmpzr1t_l9r_go_relaxed.owl up regulation of cardiac muscle tissue regeneration|up-regulation of cardiac muscle tissue regeneration|upregulation of cardiac muscle tissue regeneration|activation of cardiac muscle tissue regeneration rph 2016-05-05T11:31:06Z biological_process owl:Class GO:0072555 biolink:NamedThing 17-beta-ketosteroid reductase activity Catalysis of the reaction: a 17-beta-ketosteroid + NADPH + H+ = a 17-beta-hydroxysteroid + NADP+. tmpzr1t_l9r_go_relaxed.owl 7beta-ketosteroid reductase activity|17-beta-ketosteroid reductase (NADPH) activity mah 2011-01-27T11:36:14Z molecular_function owl:Class GO:0090462 biolink:NamedThing ornithine homeostasis Any process involved in the maintenance of an internal steady state of ornithine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0003332 biolink:NamedThing negative regulation of extracellular matrix constituent secretion Any process that decreases the rate, frequency, or extent the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T02:13:49Z biological_process owl:Class GO:0009068 biolink:NamedThing aspartate family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. tmpzr1t_l9r_go_relaxed.owl aspartate family amino acid breakdown|aspartate family amino acid catabolism|aspartate family amino acid degradation biological_process owl:Class GO:0061399 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to a cobalt ion stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-10T09:28:52Z biological_process owl:Class GO:0019338 biolink:NamedThing pentachlorophenol catabolic process The chemical reactions and pathways resulting in the breakdown of pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms. tmpzr1t_l9r_go_relaxed.owl pentachlorophenol catabolism|pentachlorophenol degradation|pentachlorophenol breakdown MetaCyc:PCPDEG-PWY biological_process owl:Class GO:1990002 biolink:NamedThing methylglyoxal reductase (NADPH-dependent, acetol producing) Catalysis of the reaction: H+ + methylglyoxal + NADPH <=> hydroxyacetone + NADP+. tmpzr1t_l9r_go_relaxed.owl RHEA:27986 jl 2012-12-05T15:55:06Z molecular_function owl:Class GO:0097128 biolink:NamedThing cyclin D1-CDK4 complex A protein complex consisting of cyclin D1 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:48:36Z cellular_component owl:Class GO:0140202 biolink:NamedThing polyamine import across plasma membrane The directed movement of a polyamine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-20T10:24:54Z biological_process owl:Class GO:1900499 biolink:NamedThing positive regulation of butyryl-CoA catabolic process to butanol Any process that activates or increases the frequency, rate or extent of butyryl-CoA catabolic process to butanol. tmpzr1t_l9r_go_relaxed.owl up-regulation of butyryl-CoA catabolic process to butanol|up regulation of butyryl-CoA catabolic process to butanol|up regulation of butyryl-CoA catabolism to butanol|positive regulation of butyryl-CoA catabolism to butanol|up-regulation of butyryl-CoA catabolism to butanol|upregulation of butyryl-CoA catabolic process to butanol|upregulation of butyryl-CoA catabolism to butanol|activation of butyryl-CoA catabolic process to butanol|activation of butyryl-CoA catabolism to butanol tt 2012-05-02T03:53:40Z biological_process owl:Class GO:0110084 biolink:NamedThing negative regulation of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to cell division site involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T19:33:51Z biological_process owl:Class GO:0034602 biolink:NamedThing oxoglutarate dehydrogenase (NAD+) activity Catalysis of the reaction: 2-oxoglutarate + CoA + NAD+ = succinyl-CoA + CO2 + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:27786|KEGG_REACTION:R08549|Reactome:R-HSA-71401|EC:1.2.1.105|MetaCyc:2OXOGLUTARATEDEH-RXN|Reactome:R-HSA-71037 molecular_function owl:Class GO:0045271 biolink:NamedThing respiratory chain complex I Respiratory chain complex I is an enzyme of the respiratory chain. It consists of several polypeptide chains and is L-shaped, with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. The electrons of NADH enter the chain at this complex. tmpzr1t_l9r_go_relaxed.owl electron transport complex I|NADH dehydrogenase complex (ubiquinone)|NADH dehydrogenase (ubiquinone) complex|NADH-Q oxidoreductase complex Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'NADH dehydrogenase (ubiquinone) activity ; GO:0008137'. GO:0045279 cellular_component owl:Class GO:0046532 biolink:NamedThing regulation of photoreceptor cell differentiation Any process that modulates the frequency, rate or extent of photoreceptor cell differentiation. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl regulation of photoreceptor differentiation GO:0045673 biological_process owl:Class GO:0061692 biolink:NamedThing cellular detoxification of hydrogen peroxide Any process that reduces or removes the toxicity of hydrogen peroxide in a cell. These include transport of hydrogen peroxide away from sensitive areas and to compartments or complexes whose purpose is sequestration. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-05T12:46:20Z biological_process owl:Class GO:0033319 biolink:NamedThing UDP-D-xylose metabolic process The chemical reactions and pathways involving UDP-D-xylose, uridinediphosphoxylose, a substance composed of xylose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose metabolism biological_process owl:Class GO:0003290 biolink:NamedThing atrial septum secundum morphogenesis The process in which anatomical structure of an atrial septum secundum is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:33:57Z biological_process owl:Class GO:0102862 biolink:NamedThing 1-18:2-2-18:2-sn-glycerol-3-phosphocholine desaturase activity (SN2-18:3 forming) Catalysis of the reaction: 1-18:2-2-18:2-sn-glycerol-3-phosphocholine + O2 + a reduced electron acceptor = 1-18:2-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.25|MetaCyc:RXN-8329 molecular_function owl:Class GO:0015743 biolink:NamedThing malate transport The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mitochondrial alpha-ketoglutarate/malate transport biological_process owl:Class GO:0009961 biolink:NamedThing response to 1-aminocyclopropane-1-carboxylic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019542 biolink:NamedThing propionate biosynthetic process The chemical reactions and pathways resulting in the formation of propionate, the anion derived from propionic acid. tmpzr1t_l9r_go_relaxed.owl propionate synthesis|propionate anabolism|propionate formation|propionate biosynthesis biological_process owl:Class GO:0018497 biolink:NamedThing 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrogenase activity Catalysis of the reaction: 1-chloro-2,2-bis(4-chlorophenyl)ethene + 2 H+ + 2 e- = 1-chloro-2,2-bis(4-chlorophenyl)ethane. 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU; 1-chloro-2,2-bis(4-chlorophenyl)ethane is also known as DDMS. tmpzr1t_l9r_go_relaxed.owl DDMS dehydrogenase activity UM-BBD_reactionID:r0514 molecular_function owl:Class GO:0002871 biolink:NamedThing regulation of natural killer cell tolerance induction Any process that modulates the frequency, rate, or extent of natural killer cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl regulation of NK cell tolerance induction biological_process owl:Class GO:0009715 biolink:NamedThing chalcone biosynthetic process The chemical reactions and pathways resulting in the formation of chalcone, phenyl steryl ketone or its hydroxylated derivatives. tmpzr1t_l9r_go_relaxed.owl chalcone anabolism|chalcone biosynthesis|chalcone synthesis|chalcone formation biological_process owl:Class GO:0009871 biolink:NamedThing jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance. tmpzr1t_l9r_go_relaxed.owl jasmonic acid/ethene-dependent systemic resistance, ethene mediated signaling pathway|jasmonic acid/ethene-dependent systemic resistance, ethene mediated signalling pathway|ethylene mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance)|jasmonic acid and ethene-dependent systemic resistance, ethene mediated signaling pathway|ethene mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance)|jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signaling pathway|jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signalling pathway biological_process owl:Class GO:0071520 biolink:NamedThing actomyosin contractile ring assembly actin filament bundle convergence A process of actin filament bundle distribution that occurs in the context of assembling an actomyosin contractile ring during cytokinesis, and that results in the compaction of actin filaments into a tight ring. tmpzr1t_l9r_go_relaxed.owl actin filament bundle convergence involved in cytokinetic actomyosin contractile ring assembly|actin filament bundle convergence involved in actomyosin contractile ring formation mah 2010-01-06T05:33:16Z biological_process owl:Class GO:2000689 biolink:NamedThing actomyosin contractile ring assembly actin filament organization An actin filament organization process that contributes to actomyosin contractile ring assembly during cytokinesis. tmpzr1t_l9r_go_relaxed.owl actin filament organization of cytokinesis, actomyosin contractile ring assembly|actin filament organization of cytokinesis, contractile ring assembly|regulation of actin filament localization of constriction ring assembly|regulation of actin filament localization of cytokinesis, actomyosin ring biosynthesis|actin filament organisation of cytokinesis, actomyosin ring formation|actin filament organization involved in cytokinetic actomyosin contractile ring assembly|actin filament organisation of contractile ring assembly|actin filament organization of contractile ring assembly|regulation of actin filament localization of cytokinesis, contractile ring assembly|actin filament organization of cytokinesis, actomyosin ring formation|actin filament organization of cytokinesis, actomyosin contractile ring formation|actin filament organisation of cytokinesis, actomyosin contractile ring formation|actin filament organization of cytokinesis, actomyosin ring biosynthesis|actin filament organisation of constriction ring assembly|regulation of actin filament localization of cytokinesis, actomyosin contractile ring formation|actin filament organisation of cytokinesis, contractile ring assembly|actin filament organization of constriction ring assembly|regulation of actin filament localization of cytokinesis, actomyosin contractile ring assembly|regulation of actin filament localization of contractile ring assembly|actin filament organisation of cytokinesis, actomyosin ring biosynthesis|actin filament organisation of cytokinesis, actomyosin contractile ring assembly|regulation of actin filament localization of cytokinesis, actomyosin ring formation mah 2011-05-17T11:48:12Z biological_process owl:Class GO:0021590 biolink:NamedThing cerebellum maturation A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellum to attain its fully functional state. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033004 biolink:NamedThing negative regulation of mast cell activation Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000999 biolink:NamedThing positive regulation of cellulose catabolic process Any process that activates or increases the frequency, rate or extent of cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellulose catabolism|positive regulation of cellulose breakdown|positive regulation of cellulose degradation tt 2011-08-08T03:21:30Z biological_process owl:Class GO:0000148 biolink:NamedThing 1,3-beta-D-glucan synthase complex A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-glucan synthase complex|(1->3)-beta-glucan synthase complex cellular_component owl:Class GO:0034329 biolink:NamedThing cell junction assembly A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900485 biolink:NamedThing positive regulation of protein targeting to vacuolar membrane Any process that activates or increases the frequency, rate or extent of protein targeting to vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl activation of protein targeting to vacuolar membrane|upregulation of protein targeting to vacuolar membrane|up-regulation of protein targeting to vacuolar membrane|up regulation of protein targeting to vacuolar membrane al 2012-05-02T10:13:41Z biological_process owl:Class GO:1903494 biolink:NamedThing response to dehydroepiandrosterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dehydroepiandrosterone stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-09-25T17:01:18Z biological_process owl:Class GO:0019585 biolink:NamedThing glucuronate metabolic process The chemical reactions and pathways involving glucuronate, any salt or ester of glucuronic acid, the uronic acid formally derived from glucose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. tmpzr1t_l9r_go_relaxed.owl glucuronate metabolism Wikipedia:Glucuronic_acid GO:0019699 biological_process owl:Class GO:0099165 biolink:NamedThing postsynaptic specialization of symmetric synapse, intracellular component A network of proteins adjacent to the postsynaptic membrane of a symmetric synapse. Its major components include that spatially and functionally organize neurotransmitter receptors in the adjacent membrane, such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. This structure is not as thick or electron dense as the postsynaptic density found in asymmetric synapses. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-10T11:54:15Z cellular_component owl:Class GO:1901285 biolink:NamedThing 5,6,7,8-tetrahydromethanopterin biosynthetic process The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydromethanopterin anabolism|5,6,7,8-tetrahydromethanopterin synthesis|5,6,7,8-tetrahydromethanopterin biosynthesis|5,6,7,8-tetrahydromethanopterin formation yaf 2012-08-17T15:33:02Z biological_process owl:Class GO:0031258 biolink:NamedThing lamellipodium membrane The portion of the plasma membrane surrounding a lamellipodium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902357 biolink:NamedThing 2-isopropylmalate(2-) transmembrane transport The process in which 2-isopropylmalate(2-) is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-14T14:43:49Z biological_process owl:Class GO:0140684 biolink:NamedThing histone H3-tri/dimethyl-lysine-9 demethylase activity Catalysis of the removal of a methyl group from a tri or a dimethyl-lysine residue at position 9 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3K9me3 demethylase activity|histone H3K9me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 EC:1.14.11.66|RHEA:60200 pg 2021-07-09T06:03:55Z molecular_function owl:Class GO:0033339 biolink:NamedThing pectoral fin development The process whose specific outcome is the progression of the pectoral fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033333 biolink:NamedThing fin development The process whose specific outcome is the progression of a fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102941 biolink:NamedThing 3,5-dihydroxyanisole O-methyltransferase activity Catalysis of the reaction: 3,5-dihydroxyanisole + S-adenosyl-L-methionine = H+ + 3,5-dimethoxyphenol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9021 molecular_function owl:Class GO:0150023 biolink:NamedThing apical dendrite arborization The process in which the anatomical structures of a dendritic tree are generated on the apical neuron side and organized into dendritic branches. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:56:05Z biological_process owl:Class GO:0140059 biolink:NamedThing dendrite arborization The process in which the anatomical structures of a dendritic tree are generated and organized into dendritic branches. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-12T15:12:07Z biological_process owl:Class GO:0007350 biolink:NamedThing blastoderm segmentation The hierarchical steps resulting in the progressive subdivision of the anterior/posterior axis of the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018893 biolink:NamedThing dibenzofuran metabolic process The chemical reactions and pathways involving dibenzofuran, a substance composed of two benzene rings linked by one ether bond and one carbon-carbon bond. Dibenzofuran is a white crystalline solid created from the production of coal tar and used as an insecticide and an intermediate in the production of other chemicals. tmpzr1t_l9r_go_relaxed.owl dibenzofuran metabolism UM-BBD_pathwayID:dbf biological_process owl:Class GO:0090318 biolink:NamedThing regulation of chylomicron remodeling Any process that modulates the rate, frequency, or extent of chylomicron remodeling. Chylomicron remodeling is the acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-30T10:09:08Z biological_process owl:Class GO:0048873 biolink:NamedThing homeostasis of number of cells within a tissue Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002522 biolink:NamedThing leukocyte migration involved in immune response The movement of a leukocyte within or between different tissues and organs of the body as part of an immune response. tmpzr1t_l9r_go_relaxed.owl leukocyte trafficking during immune response|leucocyte migration during immune response|immune cell migration during immune response|leucocyte trafficking during immune response|immune cell trafficking during immune response biological_process owl:Class GO:0110138 biolink:NamedThing positive regulation of imaginal disc-derived leg joint morphogenesis Any process that activates or increases the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2019-02-12T15:37:05Z biological_process owl:Class GO:0097690 biolink:NamedThing iron ion transmembrane transporter inhibitor activity Binds to and stops, prevents, or reduces the activity of an iron ion transmembrane transporter. tmpzr1t_l9r_go_relaxed.owl iron channel inhibitor activity An example of this is human hepcidin (UniProt symbol P81172), which regulates iron transport out of cells (see PMID:15514116). molecular_function owl:Class GO:0102611 biolink:NamedThing (+)-secoisolariciresinol monoglucoside glucosyltransferase activity Catalysis of the reaction: (+)-secoisolariciresinol monoglucoside + UDP-alpha-D-glucose <=> (+)-secoisolariciresinol diglucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15443 molecular_function owl:Class GO:0005174 biolink:NamedThing CD40 receptor binding Binding to CD40, a receptor found on the surface of all B-lymphocytes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042771 biolink:NamedThing intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis biological_process owl:Class GO:0008630 biolink:NamedThing intrinsic apoptotic signaling pathway in response to DNA damage A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the detection of DNA damage, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl DNA damage response, signal transduction resulting in induction of apoptosis biological_process owl:Class GO:0060009 biolink:NamedThing Sertoli cell development The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099019 biolink:NamedThing maintenance of protein localization at growing cell tip Any process in which localization of a protein is maintained at the growing cell tip. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location at growing cell tip dos 2016-06-30T15:17:41Z biological_process owl:Class GO:0030543 biolink:NamedThing 2-micrometer plasmid partitioning The process in which copies of the 2-micrometer plasmid, found in fungi such as Saccharomyces, are distributed to daughter cells upon cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030541 biolink:NamedThing plasmid partitioning Any process in which plasmids are segregated or distributed into daughter cells upon cell division. tmpzr1t_l9r_go_relaxed.owl GO:0030542 biological_process owl:Class GO:2001123 biolink:NamedThing maltoheptaose catabolic process The chemical reactions and pathways resulting in the breakdown of a maltoheptaose. tmpzr1t_l9r_go_relaxed.owl maltoheptaose catabolism jl 2011-10-11T02:41:29Z biological_process owl:Class GO:2001122 biolink:NamedThing maltoheptaose metabolic process The chemical reactions and pathways involving a maltoheptaose. tmpzr1t_l9r_go_relaxed.owl maltoheptaose metabolism jl 2011-10-11T02:41:26Z biological_process owl:Class GO:0031850 biolink:NamedThing delta-type opioid receptor binding Binding to a delta-type opioid receptor. tmpzr1t_l9r_go_relaxed.owl enkephalin receptor binding|delta-type opioid receptor ligand molecular_function owl:Class GO:0031628 biolink:NamedThing opioid receptor binding Binding to an opioid receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900176 biolink:NamedThing negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that stops, prevents or reduces the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry in the lateral mesoderm. tmpzr1t_l9r_go_relaxed.owl downregulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|inhibition of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|down-regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry|negative regulation of nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry bf 2012-03-09T10:39:14Z biological_process owl:Class GO:0070259 biolink:NamedThing tyrosyl-DNA phosphodiesterase activity Catalysis of the hydrolysis of phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between a DNA topoisomerase and DNA. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'DNA topoisomerase type I activity ; GO:0003917'. molecular_function owl:Class GO:0102593 biolink:NamedThing UDP-glucose: N-methylanthranilate glucosyltransferase activity Catalysis of the reaction: N-methylanthranilate + UDP-alpha-D-glucose = N-methylanthraniloyl-beta-D-glucopyranose + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15371 molecular_function owl:Class GO:1904367 biolink:NamedThing positive regulation of chemokinesis Any process that activates or increases the frequency, rate or extent of chemokinesis. tmpzr1t_l9r_go_relaxed.owl up regulation of chemokinesis|upregulation of chemokinesis|activation of chemokinesis|up-regulation of chemokinesis sl 2015-06-15T22:44:18Z biological_process owl:Class GO:0035659 biolink:NamedThing Wnt signaling pathway involved in wound healing, spreading of epidermal cells The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of a cell in the epidermis that contributes to the migration of an epidermal cell along or through a wound gap to reestablish a continuous epidermis. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt-activated signaling pathway involved in wound healing, spreading of epidermal cells bf 2011-01-28T11:34:02Z biological_process owl:Class GO:1901301 biolink:NamedThing regulation of cargo loading into COPII-coated vesicle Any process that modulates the frequency, rate or extent of cargo loading into COPII-coated vesicle. tmpzr1t_l9r_go_relaxed.owl regulation of cargo loading into COPII vesicle|regulation of COPII coat-cargo complex assembly|regulation of cargo selection into COPII-coated vesicle bf 2012-08-21T13:03:00Z biological_process owl:Class GO:0009318 biolink:NamedThing exodeoxyribonuclease VII complex An enzyme complex that catalyzes exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield nucleoside 5'-phosphates; it prefers single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032689 biolink:NamedThing negative regulation of interferon-gamma production Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. tmpzr1t_l9r_go_relaxed.owl down-regulation of interferon-gamma production|downregulation of interferon-gamma production|negative regulation of type II interferon production|inhibition of interferon-gamma production|negative regulation of interferon-gamma secretion|negative regulation of interferon-gamma biosynthetic process|down regulation of interferon-gamma production GO:0045077|GO:1902714 biological_process owl:Class GO:0043380 biolink:NamedThing regulation of memory T cell differentiation Any process that modulates the frequency, rate, or extent of memory T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of memory T cell development|regulation of memory T-lymphocyte differentiation|regulation of memory T lymphocyte differentiation|regulation of memory T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015308 biolink:NamedThing amiloride:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + amiloride(in) = H+(in) + amiloride(out). tmpzr1t_l9r_go_relaxed.owl amiloride:hydrogen antiporter activity molecular_function owl:Class GO:0043994 biolink:NamedThing histone acetyltransferase activity (H3-K23 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 23) = CoA + histone H3 N6-acetyl-L-lysine (position 23). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K23 specific) molecular_function owl:Class GO:0048284 biolink:NamedThing organelle fusion The creation of a single organelle from two or more organelles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904205 biolink:NamedThing negative regulation of skeletal muscle hypertrophy Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl downregulation of skeletal muscle hypertrophy|down-regulation of skeletal muscle hypertrophy|inhibition of skeletal muscle hypertrophy|down regulation of skeletal muscle hypertrophy sl 2015-05-08T17:38:19Z biological_process owl:Class GO:1904204 biolink:NamedThing regulation of skeletal muscle hypertrophy Any process that modulates the frequency, rate or extent of skeletal muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-08T17:38:13Z biological_process owl:Class GO:0018858 biolink:NamedThing benzoate-CoA ligase activity Catalysis of the reaction: ATP + benzoate + CoA = AMP + benzoyl-CoA + diphosphate. tmpzr1t_l9r_go_relaxed.owl benzoate:CoA ligase (AMP-forming)|benzoate-coenzyme A ligase activity|benzoyl-coenzyme A synthetase activity|benzoyl CoA synthetase (AMP forming) MetaCyc:BENZOATE--COA-LIGASE-RXN|RHEA:10132|KEGG_REACTION:R01422|UM-BBD_reactionID:r0189|EC:6.2.1.25 molecular_function owl:Class GO:0032891 biolink:NamedThing negative regulation of organic acid transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of organic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl downregulation of organic acid transport|inhibition of organic acid transport|down-regulation of organic acid transport|down regulation of organic acid transport biological_process owl:Class GO:1903665 biolink:NamedThing negative regulation of asexual reproduction Any process that stops, prevents or reduces the frequency, rate or extent of asexual reproduction. tmpzr1t_l9r_go_relaxed.owl inhibition of asexual reproduction|downregulation of asexual reproduction|down regulation of asexual reproduction|down-regulation of asexual reproduction pf 2014-11-26T21:13:32Z biological_process owl:Class GO:1903628 biolink:NamedThing negative regulation of dUTP diphosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of dUTP diphosphatase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of dUTP pyrophosphatase activity|inhibition of dUTP nucleotidohydrolase activity|negative regulation of dUTP nucleotidohydrolase activity|down regulation of deoxyuridine-triphosphatase activity|negative regulation of desoxyuridine 5'-triphosphatase activity|inhibition of dUTPase activity|inhibition of deoxyuridine-triphosphatase activity|down-regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|negative regulation of dUTP pyrophosphatase activity|down-regulation of dUTP diphosphatase activity|down-regulation of deoxyuridine-triphosphatase activity|down regulation of dUTP diphosphatase activity|down regulation of dUTP nucleotidohydrolase activity|negative regulation of dUTPase activity|down-regulation of dUTP nucleotidohydrolase activity|downregulation of dUTP diphosphatase activity|down-regulation of desoxyuridine 5'-triphosphatase activity|negative regulation of deoxyuridine-triphosphatase activity|down regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|downregulation of dUTPase activity|down regulation of desoxyuridine 5'-triphosphatase activity|downregulation of dUTP nucleotidohydrolase activity|inhibition of desoxyuridine 5'-triphosphatase activity|downregulation of deoxyuridine-triphosphatase activity|inhibition of dUTP diphosphatase activity|inhibition of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|downregulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|downregulation of desoxyuridine 5'-triphosphatase activity|down-regulation of dUTPase activity|down regulation of dUTP pyrophosphatase activity|down regulation of dUTPase activity|down-regulation of dUTP pyrophosphatase activity|inhibition of dUTP pyrophosphatase activity|negative regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity sl 2014-11-20T00:00:44Z biological_process owl:Class GO:1904374 biolink:NamedThing cellular response to kainic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-18T22:42:58Z biological_process owl:Class GO:0015229 biolink:NamedThing L-ascorbic acid transmembrane transporter activity Enables the transfer of L-ascorbate from one side of a membrane to the other. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species. tmpzr1t_l9r_go_relaxed.owl L-ascorbate transporter activity|vitamin C transporter activity Reactome:R-HSA-198870 molecular_function owl:Class GO:0009907 biolink:NamedThing response to photoperiod, red light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light photoperiod stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010329 biolink:NamedThing auxin efflux transmembrane transporter activity Enables the transfer of auxin, from one side of a membrane to the other, out of a cell. tmpzr1t_l9r_go_relaxed.owl auxin efflux facilitator|auxin efflux carrier molecular_function owl:Class GO:0010929 biolink:NamedThing positive regulation of auxin mediated signaling pathway Any process that increases the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin. tmpzr1t_l9r_go_relaxed.owl positive regulation of auxin mediated signalling pathway biological_process owl:Class GO:0046921 biolink:NamedThing alpha-(1->6)-fucosyltransferase activity Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha-(1->6) linkage. tmpzr1t_l9r_go_relaxed.owl alpha-(1,6)-fucosyltransferase activity|alpha-1,6-fucosyltransferase activity|alpha(1,6)-fucosyltransferase activity molecular_function owl:Class GO:0008417 biolink:NamedThing fucosyltransferase activity Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9033949 molecular_function owl:Class GO:1902245 biolink:NamedThing cis-abienol catabolic process The chemical reactions and pathways resulting in the breakdown of cis-abienol. tmpzr1t_l9r_go_relaxed.owl cis-abienol catabolism|cis-abienol degradation|cis-abienol breakdown ms 2013-06-20T09:09:57Z biological_process owl:Class GO:0022890 biolink:NamedThing inorganic cation transmembrane transporter activity Enables the transfer of inorganic cations from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. tmpzr1t_l9r_go_relaxed.owl trivalent inorganic cation transmembrane transporter activity|di-, tri-valent inorganic cation transmembrane transporter activity|monovalent inorganic cation transmembrane transporter activity|divalent inorganic cation transmembrane transporter activity GO:0015082|GO:0015077|GO:0072510|GO:0072509 molecular_function owl:Class GO:1990677 biolink:NamedThing mitochondrial inner membrane assembly complex A protein complex that promotes the biogenesis of mitochondrial F1Fo-ATP synthase by facilitating assembly of the peripheral stalk. Loss of INAC function causes dissociation of the F1-domain from the membrane-integral Fo-portion. tmpzr1t_l9r_go_relaxed.owl mitochondrion inner membrane assembly complex|inner membrane assembly complex|INAC complex An example of this is INA22 in Saccharomyces cerevisiae (P40576) in PMID:24942160 (inferred from direct assay/mutant phenotype/etc.). bhm 2015-03-02T13:14:52Z cellular_component owl:Class GO:0031315 biolink:NamedThing extrinsic component of mitochondrial outer membrane The component of a mitochondrial outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to mitochondrial outer membrane cellular_component owl:Class GO:0051057 biolink:NamedThing positive regulation of small GTPase mediated signal transduction Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction. tmpzr1t_l9r_go_relaxed.owl up regulation of small GTPase mediated signal transduction|activation of small GTPase mediated signal transduction|up-regulation of small GTPase mediated signal transduction|positive regulation of small GTPase-mediated signal transduction|stimulation of small GTPase mediated signal transduction|upregulation of small GTPase mediated signal transduction biological_process owl:Class GO:0042937 biolink:NamedThing tripeptide transmembrane transporter activity Enables the transfer of a tripeptide, a compound containing three amino acids linked together by peptide bonds, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl tripeptide transporter activity molecular_function owl:Class GO:0046418 biolink:NamedThing nopaline metabolic process The chemical reactions and pathways involving nopaline, (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative. tmpzr1t_l9r_go_relaxed.owl nopaline metabolism biological_process owl:Class GO:0036417 biolink:NamedThing tRNA destabilization Any process that decreases the stability of a tRNA molecule, making it more vulnerable to degradative processes. tmpzr1t_l9r_go_relaxed.owl bf 2013-08-22T15:43:13Z biological_process owl:Class GO:1902372 biolink:NamedThing positive regulation of tRNA catabolic process Any process that activates or increases the frequency, rate or extent of tRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of tRNA catabolic process|positive regulation of tRNA catabolism|up regulation of tRNA catabolism|up-regulation of tRNA breakdown|upregulation of tRNA breakdown|upregulation of tRNA degradation|up-regulation of tRNA degradation|upregulation of tRNA catabolic process|up regulation of tRNA breakdown|up regulation of tRNA catabolic process|activation of tRNA degradation|up-regulation of tRNA catabolic process|activation of tRNA catabolism|positive regulation of tRNA breakdown|activation of tRNA breakdown|upregulation of tRNA catabolism|up regulation of tRNA degradation|positive regulation of tRNA degradation|up-regulation of tRNA catabolism bf 2013-08-22T15:08:29Z biological_process owl:Class GO:0002006 biolink:NamedThing vasoconstriction by vasopressin involved in systemic arterial blood pressure control The decrease in blood vessel diameter as a result of the release of vasopressin into the blood stream. tmpzr1t_l9r_go_relaxed.owl vasopressin mediated vasoconstriction involved in systemic arterial blood pressure control biological_process owl:Class GO:2000386 biolink:NamedThing positive regulation of ovarian follicle development Any process that activates or increases the frequency, rate or extent of ovarian follicle development. tmpzr1t_l9r_go_relaxed.owl positive regulation of follicular phase yaf 2011-02-16T02:21:21Z biological_process owl:Class GO:0045849 biolink:NamedThing negative regulation of nurse cell apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of nurse cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of nurse cell apoptosis|down regulation of nurse cell apoptosis|downregulation of nurse cell apoptosis|down-regulation of nurse cell apoptosis|inhibition of nurse cell apoptosis biological_process owl:Class GO:1904746 biolink:NamedThing negative regulation of apoptotic process involved in development Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in development. tmpzr1t_l9r_go_relaxed.owl down-regulation of programmed cell death by apoptosis involved in anatomical structure development|inhibition of apoptotic programmed cell death involved in development of an anatomical structure|inhibition of activation of apoptosis involved in anatomical structure development|down regulation of apoptotic process involved in anatomical structure development|inhibition of apoptosis signaling involved in development of an anatomical structure|down regulation of apoptotic program involved in anatomical structure development|down regulation of apoptotic programmed cell death involved in development of an anatomical structure|negative regulation of apoptosis involved in development of an anatomical structure|inhibition of signaling (initiator) caspase activity involved in development of an anatomical structure|negative regulation of activation of apoptosis involved in anatomical structure development|inhibition of apoptosis activator activity involved in development of an anatomical structure|inhibition of apoptotic cell death involved in anatomical structure development|down-regulation of apoptosis signaling involved in development of an anatomical structure|down regulation of induction of apoptosis involved in development of an anatomical structure|inhibition of activation of apoptosis involved in development of an anatomical structure|negative regulation of induction of apoptosis by p53 involved in development of an anatomical structure|down-regulation of apoptotic cell death involved in development of an anatomical structure|inhibition of type I programmed cell death involved in development of an anatomical structure|downregulation of apoptotic program involved in anatomical structure development|down regulation of apoptotic cell death involved in development of an anatomical structure|down regulation of apoptosis activator activity involved in anatomical structure development|inhibition of apoptotic program involved in development of an anatomical structure|inhibition of induction of apoptosis by p53 involved in development of an anatomical structure|negative regulation of commitment to apoptosis involved in development of an anatomical structure|down-regulation of induction of apoptosis involved in anatomical structure development|inhibition of apoptosis activator activity involved in anatomical structure development|downregulation of apoptosis involved in anatomical structure development|down regulation of activation of apoptosis involved in anatomical structure development|inhibition of programmed cell death by apoptosis involved in anatomical structure development|downregulation of apoptotic process involved in development|downregulation of type I programmed cell death involved in development of an anatomical structure|downregulation of apoptosis activator activity involved in anatomical structure development|downregulation of signaling (initiator) caspase activity involved in development of an anatomical structure|down-regulation of apoptosis involved in anatomical structure development|down-regulation of apoptosis activator activity involved in development of an anatomical structure|inhibition of apoptotic process involved in development|down regulation of apoptotic process involved in development of an anatomical structure|negative regulation of activation of apoptosis involved in development of an anatomical structure|down-regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|negative regulation of apoptotic programmed cell death involved in development of an anatomical structure|downregulation of commitment to apoptosis involved in development of an anatomical structure|downregulation of signaling (initiator) caspase activity involved in anatomical structure development|down regulation of apoptosis involved in development of an anatomical structure|negative regulation of programmed cell death by apoptosis involved in anatomical structure development|downregulation of apoptotic programmed cell death involved in development of an anatomical structure|downregulation of apoptosis involved in development of an anatomical structure|down regulation of signaling (initiator) caspase activity involved in anatomical structure development|down regulation of programmed cell death by apoptosis involved in anatomical structure development|down-regulation of induction of apoptosis by p53 involved in development of an anatomical structure|down regulation of apoptosis activator activity involved in development of an anatomical structure|negative regulation of signaling (initiator) caspase activity involved in anatomical structure development|down-regulation of apoptotic process involved in development|negative regulation of apoptotic process involved in anatomical structure development|down-regulation of apoptosis signaling involved in anatomical structure development|inhibition of apoptotic cell death involved in development of an anatomical structure|downregulation of induction of apoptosis involved in anatomical structure development|down-regulation of activation of apoptosis involved in development of an anatomical structure|downregulation of apoptotic cell death involved in development of an anatomical structure|down regulation of programmed cell death by apoptosis involved in development of an anatomical structure|down regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|down regulation of apoptotic program involved in development of an anatomical structure|negative regulation of apoptotic program involved in anatomical structure development|down-regulation of commitment to apoptosis involved in development of an anatomical structure|down regulation of apoptosis signaling involved in anatomical structure development|down regulation of induction of apoptosis by p53 involved in anatomical structure development|down regulation of type I programmed cell death involved in anatomical structure development|down-regulation of induction of apoptosis involved in development of an anatomical structure|negative regulation of apoptotic cell death involved in anatomical structure development|down-regulation of apoptotic programmed cell death involved in development of an anatomical structure|downregulation of activation of apoptosis involved in anatomical structure development|inhibition of apoptosis involved in anatomical structure development|inhibition of apoptosis involved in development of an anatomical structure|down-regulation of type I programmed cell death involved in development of an anatomical structure|inhibition of commitment to apoptosis involved in development of an anatomical structure|downregulation of programmed cell death by apoptosis involved in anatomical structure development|inhibition of apoptotic programmed cell death involved in anatomical structure development|down regulation of apoptotic process involved in development|negative regulation of induction of apoptosis involved in development of an anatomical structure|inhibition of apoptosis signaling involved in anatomical structure development|inhibition of induction of apoptosis involved in anatomical structure development|inhibition of apoptotic process involved in anatomical structure development|downregulation of activation of apoptosis involved in development of an anatomical structure|down-regulation of type I programmed cell death involved in anatomical structure development|negative regulation of apoptotic programmed cell death involved in anatomical structure development|downregulation of type I programmed cell death involved in anatomical structure development|downregulation of induction of apoptosis involved in development of an anatomical structure|negative regulation of apoptotic cell death involved in development of an anatomical structure|down-regulation of apoptotic process involved in development of an anatomical structure|negative regulation of apoptosis involved in anatomical structure development|down-regulation of programmed cell death by apoptosis involved in development of an anatomical structure|negative regulation of signaling (initiator) caspase activity involved in development of an anatomical structure|down regulation of induction of apoptosis involved in anatomical structure development|down-regulation of apoptotic program involved in development of an anatomical structure|inhibition of induction of apoptosis involved in development of an anatomical structure|negative regulation of apoptosis signaling involved in development of an anatomical structure|inhibition of apoptotic program involved in anatomical structure development|negative regulation of type I programmed cell death involved in development of an anatomical structure|down regulation of apoptotic cell death involved in anatomical structure development|down regulation of apoptotic programmed cell death involved in anatomical structure development|down-regulation of activation of apoptosis involved in anatomical structure development|down regulation of commitment to apoptosis involved in development of an anatomical structure|down regulation of apoptosis involved in anatomical structure development|inhibition of apoptotic process involved in development of an anatomical structure|inhibition of signaling (initiator) caspase activity involved in anatomical structure development|down-regulation of apoptotic process involved in anatomical structure development|negative regulation of induction of apoptosis by p53 involved in anatomical structure development|downregulation of apoptotic cell death involved in anatomical structure development|downregulation of programmed cell death by apoptosis involved in development of an anatomical structure|negative regulation of type I programmed cell death involved in anatomical structure development|inhibition of induction of apoptosis by p53 involved in anatomical structure development|down-regulation of apoptosis involved in development of an anatomical structure|down regulation of apoptosis signaling involved in development of an anatomical structure|negative regulation of apoptosis activator activity involved in anatomical structure development|downregulation of apoptotic program involved in development of an anatomical structure|downregulation of apoptotic process involved in anatomical structure development|negative regulation of commitment to apoptosis involved in anatomical structure development|inhibition of type I programmed cell death involved in anatomical structure development|downregulation of apoptosis signaling involved in anatomical structure development|inhibition of programmed cell death by apoptosis involved in development of an anatomical structure|down regulation of commitment to apoptosis involved in anatomical structure development|down-regulation of apoptosis activator activity involved in anatomical structure development|down regulation of induction of apoptosis by p53 involved in development of an anatomical structure|downregulation of commitment to apoptosis involved in anatomical structure development|downregulation of apoptosis activator activity involved in development of an anatomical structure|negative regulation of induction of apoptosis involved in anatomical structure development|negative regulation of apoptosis signaling involved in anatomical structure development|negative regulation of apoptotic program involved in development of an anatomical structure|down-regulation of apoptotic program involved in anatomical structure development|downregulation of apoptotic programmed cell death involved in anatomical structure development|down regulation of activation of apoptosis involved in development of an anatomical structure|downregulation of apoptosis signaling involved in development of an anatomical structure|negative regulation of programmed cell death by apoptosis involved in development of an anatomical structure|downregulation of induction of apoptosis by p53 involved in development of an anatomical structure|downregulation of apoptotic process involved in development of an anatomical structure|down-regulation of apoptotic programmed cell death involved in anatomical structure development|down-regulation of induction of apoptosis by p53 involved in anatomical structure development|down-regulation of commitment to apoptosis involved in anatomical structure development|negative regulation of apoptosis activator activity involved in development of an anatomical structure|down-regulation of signaling (initiator) caspase activity involved in anatomical structure development|inhibition of commitment to apoptosis involved in anatomical structure development|down-regulation of apoptotic cell death involved in anatomical structure development|down regulation of type I programmed cell death involved in development of an anatomical structure|downregulation of induction of apoptosis by p53 involved in anatomical structure development|negative regulation of apoptotic process involved in development of an anatomical structure U4PR86 in PMID:22801495 inferred from mutant phenotype es 2015-10-19T14:12:27Z biological_process owl:Class GO:1903928 biolink:NamedThing cellular response to cyanide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyanide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T19:04:28Z biological_process owl:Class GO:1903927 biolink:NamedThing response to cyanide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyanide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T19:04:19Z biological_process owl:Class GO:0021899 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:0033259 biolink:NamedThing plastid DNA replication The process in which new strands of DNA are synthesized in a plastid. tmpzr1t_l9r_go_relaxed.owl replication of plastid DNA|plastid DNA synthesis biological_process owl:Class GO:0033258 biolink:NamedThing plastid DNA metabolic process The chemical reactions and pathways involving plastid DNA. tmpzr1t_l9r_go_relaxed.owl plastid DNA metabolism biological_process owl:Class GO:0019700 biolink:NamedThing organic phosphonate catabolic process The chemical reactions and pathways resulting in the breakdown of phosphonates, any organic compound containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Catabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included. tmpzr1t_l9r_go_relaxed.owl organophosphonate catabolic process|phosphonate catabolism|phosphonate degradation|phosphonate breakdown biological_process owl:Class GO:0019634 biolink:NamedThing organic phosphonate metabolic process The chemical reactions and pathways involving phosphonates, any organic compounds containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included. tmpzr1t_l9r_go_relaxed.owl phosphonate metabolism|organophosphonate metabolic process biological_process owl:Class GO:0019283 biolink:NamedThing L-methionine biosynthetic process from O-phospho-L-homoserine and cystathionine The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including O-phospho-L-homoserine and cystathionine. tmpzr1t_l9r_go_relaxed.owl methionine biosynthetic process from O-phospho-L-homoserine and cystathionine|L-methionine formation from O-phospho-L-homoserine and cystathionine|L-methionine synthesis from O-phospho-L-homoserine and cystathionine|L-methionine anabolism from O-phospho-L-homoserine and cystathionine biological_process owl:Class GO:0071366 biolink:NamedThing cellular response to indolebutyric acid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to indole-3-butyric acid stimulus|cellular response to IBA stimulus mah 2009-12-11T03:12:14Z biological_process owl:Class GO:0034592 biolink:NamedThing synaptic vesicle lumen The volume enclosed by the synaptic vesicle membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900736 biolink:NamedThing regulation of phospholipase C-activating G protein-coupled receptor signaling pathway Any process that modulates the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger|regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)|regulation of PLC-activating GPCR signaling pathway|regulation of phospholipase C-activating dopamine receptor signaling pathway|regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)|regulation of phospholipase C-activating G-protein coupled receptor signaling pathway rl 2012-05-28T10:07:27Z biological_process owl:Class GO:0070652 biolink:NamedThing HAUS complex A protein complex that localizes to interphase centrosomes and to mitotic spindle tubules and regulates mitotic spindle assembly and centrosome integrity; in human, the complex consists of eight subunits, some of which are homologous to subunits of the Drosophila Augmin complex. tmpzr1t_l9r_go_relaxed.owl HAUS augmin complex mah 2009-05-28T03:21:01Z cellular_component owl:Class GO:0046646 biolink:NamedThing regulation of gamma-delta T cell proliferation Any process that modulates the frequency, rate or extent of gamma-delta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of gamma-delta T lymphocyte proliferation|regulation of gamma-delta T-lymphocyte proliferation|regulation of gamma-delta T-cell proliferation biological_process owl:Class GO:0086100 biolink:NamedThing endothelin receptor signaling pathway A series of molecular signals initiated by an endothelin receptor binding to one of its physiological ligands, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl endothelin signaling pathway bf biological_process owl:Class GO:0022623 biolink:NamedThing proteasome-activating nucleotidase complex A homohexameric complex that recognizes and unfolds core proteasome substrate proteins, and translocates them to the core complex in an ATP dependent manner. tmpzr1t_l9r_go_relaxed.owl PAN cellular_component owl:Class GO:0071795 biolink:NamedThing K11-linked polyubiquitin modification-dependent protein binding Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 11 in the target protein. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-02T02:11:41Z molecular_function owl:Class GO:0031593 biolink:NamedThing polyubiquitin modification-dependent protein binding Binding to a protein upon poly-ubiquitination of the target protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097205 biolink:NamedThing renal filtration A renal system process in which fluid circulating through the body is filtered through a barrier system. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-03T03:10:17Z biological_process owl:Class GO:0019534 biolink:NamedThing toxin transmembrane transporter activity Enables the transfer of a toxin from one side of a membrane to the other. A toxin is a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905184 biolink:NamedThing positive regulation of protein serine/threonine phosphatase activity Any process that activates or increases the frequency, rate or extent of protein serine/threonine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl activation of serine/threonine specific protein phosphatase activity|up-regulation of protein serine/threonine phosphatase activity|upregulation of protein serine/threonine phosphatase activity|up regulation of serine/threonine specific protein phosphatase activity|up regulation of protein serine/threonine phosphatase activity|upregulation of serine/threonine specific protein phosphatase activity|activation of protein serine/threonine phosphatase activity|positive regulation of serine/threonine specific protein phosphatase activity|up-regulation of serine/threonine specific protein phosphatase activity mah 2016-05-10T15:28:13Z biological_process owl:Class GO:0032516 biolink:NamedThing positive regulation of phosphoprotein phosphatase activity Any process that activates or increases the activity of a phosphoprotein phosphatase. tmpzr1t_l9r_go_relaxed.owl upregulation of protein phosphatase type 2A activity|activation of protein phosphatase type 2A activity|upregulation of phosphoprotein phosphatase activity|upregulation of protein phosphatase type 2B activity|stimulation of protein phosphatase 2 activity|stimulation of phosphoprotein phosphatase activity|activation of phosphoprotein phosphatase activity|calcineurin activation|upregulation of protein phosphatase 2 activity|activation of protein phosphatase 3 activity|positive regulation of protein phosphatase 3 activity|activation of protein phosphatase type 2B activity|up regulation of protein phosphatase 3 activity|positive regulation of protein phosphatase 2 activity|up-regulation of protein phosphatase type 2A activity|up regulation of calcineurin activity|stimulation of protein phosphatase type 2A activity|activation of calcineurin activity|positive regulation of protein phosphatase type 2A activity|up-regulation of protein phosphatase 2 activity|up regulation of protein phosphatase type 2A activity|positive regulation of calcineurin activity|stimulation of protein phosphatase type 2B activity|up regulation of phosphoprotein phosphatase activity|positive regulation of protein phosphatase type 2B activity|up regulation of protein phosphatase 2 activity|up regulation of protein phosphatase type 2B activity|up-regulation of phosphoprotein phosphatase activity|up-regulation of protein phosphatase type 2B activity GO:0032514|GO:0034049 biological_process owl:Class GO:2000229 biolink:NamedThing regulation of pancreatic stellate cell proliferation Any process that modulates the frequency, rate or extent of pancreatic stellate cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-09T03:45:18Z biological_process owl:Class GO:0010164 biolink:NamedThing response to cesium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cesium stimulus. tmpzr1t_l9r_go_relaxed.owl response to cesium biological_process owl:Class GO:1905191 biolink:NamedThing positive regulation of metaphase/anaphase transition of meiosis II Any process that activates or increases the frequency, rate or extent of metaphase/anaphase transition of meiosis II. tmpzr1t_l9r_go_relaxed.owl positive regulation of meiosis II metaphase/anaphase transition vw 2016-05-10T16:47:05Z biological_process owl:Class GO:0001586 biolink:NamedThing Gi/o-coupled serotonin receptor activity Combining with serotonin and transmitting the signal across the membrane by activation of the Gi/o subunit of an associated cytoplasmic heterotrimeric G protein complex. The Gi/o subunit subsequently inhibits adenylate cyclase and results in a decrease in cyclic AMP (cAMP) levels. tmpzr1t_l9r_go_relaxed.owl 5-HT1 receptor activity|serotonin receptor activity, coupled via Gi/o molecular_function owl:Class GO:0004993 biolink:NamedThing G protein-coupled serotonin receptor activity Combining with the biogenic amine serotonin and transmitting the signal across the membrane by activating an associated G-protein. Serotonin (5-hydroxytryptamine) is a neurotransmitter and hormone found in vertebrates and invertebrates. tmpzr1t_l9r_go_relaxed.owl 5-HT receptor|5-hydroxytryptamine receptor|G-protein coupled serotonin receptor activity|G protein coupled serotonin receptor activity https://github.com/geneontology/go-ontology/issues/12942 Wikipedia:5-HT_receptor GO:0016609|GO:0001585 molecular_function owl:Class GO:0005352 biolink:NamedThing alpha-glucoside:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alpha-glucoside(out) + H+(out) = alpha-glucoside(in) + H+(in). Alpha-glucosides include trehalose, maltose, turanose, isomaltose, alpha-methylglucoside, maltotriose, palatinose, trehalose and melezitose. tmpzr1t_l9r_go_relaxed.owl alpha-glucoside:hydrogen symporter activity|general alpha-glucoside:proton symporter activity|general alpha-glucoside transporter activity|general alpha-glucoside:hydrogen symporter activity molecular_function owl:Class GO:0047004 biolink:NamedThing UDP-N-acetylglucosamine 6-dehydrogenase activity Catalysis of the reaction: H(2)O + 2 NAD(+) + UDP-N-acetyl-alpha-D-glucosamine = 3 H(+) + 2 NADH + UDP-N-acetyl-2-amino-2-deoxy-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl UDP-2-acetamido-2-deoxy-D-glucose:NAD oxidoreductase activity|UDP-GLcNAc dehydrogenase activity|UDP-N-acetyl-D-glucosamine:NAD+ 6-oxidoreductase activity|uridine diphosphoacetylglucosamine dehydrogenase activity|UDPacetylglucosamine dehydrogenase activity KEGG_REACTION:R00421|EC:1.1.1.136|RHEA:13325|MetaCyc:1.1.1.136-RXN molecular_function owl:Class GO:0099568 biolink:NamedThing cytoplasmic region Any (proper) part of the cytoplasm of a single cell of sufficient size to still be considered cytoplasm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072252 biolink:NamedThing metanephric juxtaglomerulus cell development The process whose specific outcome is the progression of a metanephric juxtaglomerulus cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:55:31Z biological_process owl:Class GO:0072142 biolink:NamedThing juxtaglomerulus cell development The process whose specific outcome is the progression of a juxtaglomerulus cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T01:42:53Z biological_process owl:Class GO:2001258 biolink:NamedThing negative regulation of cation channel activity Any process that stops, prevents or reduces the frequency, rate or extent of cation channel activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of nonselective cation channel activity|negative regulation of cation diffusion facilitator activity vk 2011-12-07T07:14:51Z biological_process owl:Class GO:0018685 biolink:NamedThing alkane 1-monooxygenase activity Catalysis of the reaction: octane + reduced rubredoxin + O2 = 1-octanol + oxidized rubredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl 1-hydroxylase activity|lauric acid omega-hydroxylase activity|alkane hydroxylase activity|alkane 1-hydroxylase activity|fatty acid (omega-1)-hydroxylase activity|alkane monooxygenase activity|fatty acid omega-hydroxylase activity|omega-hydroxylase activity|alkane,reduced-rubredoxin:oxygen 1-oxidoreductase activity UM-BBD_enzymeID:e0022|EC:1.14.15.3|MetaCyc:ALKANE-1-MONOOXYGENASE-RXN|RHEA:19341 GO:0008393 molecular_function owl:Class GO:0015729 biolink:NamedThing oxaloacetate transport The directed movement of oxaloacetate, the anion of oxobutanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070695 biolink:NamedThing FHF complex A protein complex that is composed of AKTIP/FTS, FAM160A2/p107FHIP, and one or more members of the Hook family of proteins, HOOK1, HOOK2, and HOOK3. The complex is thought to promote vesicle trafficking and/or fusion, and associates with the homotypic vesicular sorting complex (the HOPS complex). tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. mah 2009-06-04T03:17:29Z cellular_component owl:Class GO:0003297 biolink:NamedThing heart wedging The morphogenetic process in which the aorta inserts between the atrioventricular valves, contributing to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T08:52:58Z biological_process owl:Class GO:0050002 biolink:NamedThing D-proline reductase (dithiol) activity Catalysis of the reaction: lipoate + 5-aminopentanoate = dihydrolipoate + D-proline. tmpzr1t_l9r_go_relaxed.owl 5-aminopentanoate:lipoate oxidoreductase (cyclizing) EC:1.21.4.1|RHEA:12737|MetaCyc:1.21.4.1-RXN Note that this function was formerly EC:1.4.4.1. molecular_function owl:Class GO:0002648 biolink:NamedThing positive regulation of central tolerance induction Any process that activates or increases the frequency, rate, or extent of central tolerance induction. tmpzr1t_l9r_go_relaxed.owl stimulation of central tolerance induction|activation of central tolerance induction|upregulation of central tolerance induction|up regulation of central tolerance induction|up-regulation of central tolerance induction biological_process owl:Class GO:0043233 biolink:NamedThing organelle lumen The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042731 biolink:NamedThing PH domain binding Binding to a PH domain (pleckstrin homology) of a protein, a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090677 biolink:NamedThing reversible differentiation A phenotypic switching process where a cell reversibly differentiates and dedifferentiates from one cell type into another. tmpzr1t_l9r_go_relaxed.owl tb 2016-04-28T17:32:40Z biological_process owl:Class GO:0106118 biolink:NamedThing regulation of sterol biosynthetic process Any process that modulates the frequency, rate or extent of a sterol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-19T17:41:06Z biological_process owl:Class GO:1990501 biolink:NamedThing exon-exon junction subcomplex mago-y14 Component of the core exon-exon-junction complex (EJC). Fairly conserved in eukaryotes; in Drosophila, consists of the Mago and Y14 (tsunagi) gene products. Important for coupling nuclear and cytoplasmic events in gene expression. Inhibits the ATPase activity of eIF4AIII (Q9VHS8) to ensure a stable association of the EJC core with the mRNA. tmpzr1t_l9r_go_relaxed.owl MGN-RBM8A complex|exon junction subcomplex MAGOH-Y14|mago-y14 complex An example of this is Mago in drome (P49028) in PMID:12730685 (inferred from direct assay). bhm 2014-09-30T14:05:28Z cellular_component owl:Class GO:0035145 biolink:NamedThing exon-exon junction complex A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. tmpzr1t_l9r_go_relaxed.owl EJC|exon junction complex cellular_component owl:Class GO:1903383 biolink:NamedThing regulation of hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of a hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen peroxide-induced neuron apoptosis|regulation of H2O2-induced neuron intrinsic apoptotic signaling pathway|regulation of hydrogen peroxide-induced neuronal apoptosis|regulation of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|regulation of neuron apoptosis in response to hydrogen peroxide|regulation of neuron intrinsic apoptotic signaling pathway in response to H2O2|regulation of H2O2-induced neuron apoptosis bf 2014-08-27T08:50:37Z biological_process owl:Class GO:2000142 biolink:NamedThing regulation of DNA-templated transcription, initiation Any process that modulates the frequency, rate or extent of DNA-templated transcription initiation. tmpzr1t_l9r_go_relaxed.owl regulation of transcription initiation, DNA-dependent|regulation of initiation of DNA-dependent transcription|regulation of DNA-dependent transcription, initiation mah 2010-10-01T09:11:35Z biological_process owl:Class GO:0051785 biolink:NamedThing positive regulation of nuclear division Any process that activates or increases the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. tmpzr1t_l9r_go_relaxed.owl stimulation of nuclear division|activation of nuclear division|up regulation of nuclear division|upregulation of nuclear division|up-regulation of nuclear division biological_process owl:Class GO:0051783 biolink:NamedThing regulation of nuclear division Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061817 biolink:NamedThing endoplasmic reticulum-plasma membrane tethering The attachment of an endoplasmic reticulum membrane to the plasma membrane via molecular tethers. tmpzr1t_l9r_go_relaxed.owl ER-plasma membrane tethering dph 2016-12-05T14:43:58Z biological_process owl:Class GO:0106297 biolink:NamedThing E-series resolvin biosynthetic process The chemical reactions and pathways resulting in the formation of resolvin family E-series, hydroxy fatty acids derived from icosapentaenoic acid. tmpzr1t_l9r_go_relaxed.owl hjd 2020-08-25T13:49:46Z biological_process owl:Class GO:1901373 biolink:NamedThing lipid hydroperoxide transport The directed movement of a lipid hydroperoxide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-28T00:24:39Z biological_process owl:Class GO:0002302 biolink:NamedThing CD8-positive, alpha-beta T cell differentiation involved in immune response The process in which an antigenically naive CD8-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta T cell differentiation during immune response|CD8-positive, alpha-beta intraepithelial T cell development|CD8-positive, alpha-beta T-lymphocyte differentiation during immune response|CD8-positive, alpha-beta T lymphocyte differentiation during immune response|CD8-positive, alpha-beta T-cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:2000129 biolink:NamedThing negative regulation of octopamine signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of octopamine signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of octopamine signalling pathway mah 2010-09-29T09:29:44Z biological_process owl:Class GO:0004818 biolink:NamedThing glutamate-tRNA ligase activity Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). tmpzr1t_l9r_go_relaxed.owl glutamyl-transfer ribonucleic acid synthetase activity|glutamyl-transfer ribonucleate synthetase activity|glutamyl-transfer RNA synthetase activity|glutamic acid translase activity|glutamyl-tRNA synthetase activity|L-glutamate:tRNAGlu ligase (AMP-forming) activity|glutamate-tRNA synthetase activity RHEA:23540|MetaCyc:GLURS-RXN|Reactome:R-HSA-379861|EC:6.1.1.17|Reactome:R-HSA-380216 molecular_function owl:Class GO:1905665 biolink:NamedThing positive regulation of calcium ion import across plasma membrane Any process that activates or increases the frequency, rate or extent of calcium ion import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion import across plasma membrane|upregulation of calcium ion import across plasma membrane|activation of calcium ion import across plasma membrane|up regulation of calcium ion import across plasma membrane An example of this is PPP3CA in human (Q08209) in 17640527 (inferred from direct assay). bhm 2016-11-11T09:26:23Z biological_process owl:Class GO:0047389 biolink:NamedThing glycerophosphocholine phosphodiesterase activity Catalysis of the reaction: H2O + L-1-glycero-3-phosphocholine = glycerol-3-phosphate + choline. tmpzr1t_l9r_go_relaxed.owl glycerophosphohydrolase activity|glycerophosphinicocholine diesterase activity|sn-glycero-3-phosphorylcholine diesterase activity|glycerolphosphorylcholine phosphodiesterase activity|glycerylphosphorylcholinediesterase activity|sn-glycero-3-phosphocholine glycerophosphohydrolase activity MetaCyc:3.1.4.2-RXN|EC:3.1.4.2|RHEA:16061|Reactome:R-HSA-6814132 molecular_function owl:Class GO:0052860 biolink:NamedThing 2'-deoxymugineic-acid 3-dioxygenase activity Catalysis of the reaction: 2'-deoxymugineic acid + 2-oxoglutarate + O2 = 3-epihydroxy-2'-deoxymugineic acid + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl 2'-deoxymugineic acid,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity RHEA:20065|MetaCyc:RXN-7983|EC:1.14.11.25|KEGG_REACTION:R07187 ai 2011-12-05T06:00:58Z molecular_function owl:Class GO:0102341 biolink:NamedThing 3-oxo-lignoceroyl-CoA reductase activity Catalysis of the reaction: (R)-3-hydroxylignoceroyl-CoA + NADP <=> 3-oxotetracosanoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13300|EC:1.1.1.330 molecular_function owl:Class GO:2000001 biolink:NamedThing regulation of DNA damage checkpoint Any process that modulates the frequency, rate or extent of a DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl regulation of DNA damage response, signal transduction resulting in cell cycle arrest jl 2010-07-15T03:25:00Z biological_process owl:Class GO:1901976 biolink:NamedThing regulation of cell cycle checkpoint Any process that modulates the frequency, rate or extent of cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl regulation of G1/S checkpoint|regulation of G1/S transition checkpoint Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of checkpoint (i.e mitotic spindle or DNA damage etc). jl 2013-03-06T15:10:20Z GO:2001047 biological_process owl:Class GO:0002186 biolink:NamedThing cytosolic creatine kinase complex A dimeric protein complex having creatine kinase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-14T02:14:16Z cellular_component owl:Class GO:0002185 biolink:NamedThing creatine kinase complex A protein complex having creatine kinase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-14T02:12:19Z cellular_component owl:Class GO:0071089 biolink:NamedThing alphaV-beta3 integrin-tissue transglutaminase complex A protein complex that consists of an alphaV-beta3 integrin complex bound to tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-TGM2 complex mah 2009-11-06T04:46:02Z cellular_component owl:Class GO:0002787 biolink:NamedThing negative regulation of antibacterial peptide production Any process that stops, prevents, or reduces the frequency, rate, or extent of antibacterial peptide production. tmpzr1t_l9r_go_relaxed.owl down-regulation of antibacterial peptide production|down regulation of antibacterial peptide production|inhibition of antibacterial peptide production|downregulation of antibacterial peptide production biological_process owl:Class GO:0046881 biolink:NamedThing positive regulation of follicle-stimulating hormone secretion Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl positive regulation of follicle stimulating hormone secretion|stimulation of follicle-stimulating hormone secretion|up regulation of follicle-stimulating hormone secretion|activation of follicle-stimulating hormone secretion|upregulation of follicle-stimulating hormone secretion|up-regulation of follicle-stimulating hormone secretion biological_process owl:Class GO:0032278 biolink:NamedThing positive regulation of gonadotropin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of a gonadotropin. tmpzr1t_l9r_go_relaxed.owl activation of gonadotropin secretion|up-regulation of gonadotropin secretion|up regulation of gonadotropin secretion|stimulation of gonadotropin secretion|positive regulation of gonadotrophin secretion|upregulation of gonadotropin secretion biological_process owl:Class GO:1903091 biolink:NamedThing pyridoxamine transmembrane transport The process in which pyridoxamine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl al 2014-06-03T10:41:20Z biological_process owl:Class GO:0034413 biolink:NamedThing ascospore wall (1->3)-beta-D-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall beta-1,3-glucan synthesis|ascospore wall beta-1,3-glucan biosynthesis|ascospore wall 1,3-beta-glucan anabolism|ascospore wall beta-1,3-glucan anabolism|ascospore wall 1,3-beta-glucan synthesis|ascospore wall 1,3-beta-glucan biosynthesis|ascospore wall 1,3-beta-glucan biosynthetic process|ascospore wall beta-1,3-glucan biosynthetic process|ascospore wall 1,3-beta-glucan formation|ascospore wall beta-1,3-glucan formation|ascospore wall 1,3-beta-D-glucan biosynthetic process biological_process owl:Class GO:0006238 biolink:NamedThing CMP salvage Any process that generates CMP, cytidine monophosphate, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl cytidine monophosphate salvage biological_process owl:Class GO:0055106 biolink:NamedThing ubiquitin-protein transferase regulator activity Binds to and modulates the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032506 biolink:NamedThing cytokinetic process A cellular process that is involved in cytokinesis (the division of the cytoplasm of a cell and its separation into two daughter cells). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008781 biolink:NamedThing N-acylneuraminate cytidylyltransferase activity Catalysis of the reaction: CTP + N-acylneuraminate = diphosphate + CMP-N-acylneuraminate. tmpzr1t_l9r_go_relaxed.owl cytidine monophosphosialate pyrophosphorylase activity|CMP-sialate synthetase activity|cytidine monophosphoacetylneuraminic synthetase activity|cytidine 5-monophosphate N-acetylneuraminic acid synthetase activity|CMP-sialic acid synthetase activity|cytidine monophosphosialate synthetase activity|CMP-NeuAc synthetase activity|CMP-NeuNAc synthetase activity|cytidine 5'-monophospho-N-acetylneuraminic acid synthetase activity|cytidine 5'-monophosphosialic acid synthetase activity|CMP-sialate diphosphorylase activity|acylneuraminate cytidyltransferase activity|cytidine monophosphosialic acid synthetase activity|CMP-Neu5Ac synthetase activity|CMP-sialate pyrophosphorylase activity|CMP-sialic synthetase activity|CMP-N-acetylneuraminate synthetase activity|CMP-sialate synthase activity|CMP-N-acetylneuraminate synthase activity|CMP-NANA synthetase activity|CTP:N-acylneuraminate cytidylyltransferase activity|acetylneuraminate cytidylyltransferase activity|CMP-N-acetylneuraminic acid synthase activity|CMP-N-acetylneuraminic acid synthetase activity RHEA:11344|Reactome:R-HSA-4084982|MetaCyc:ACYLNEURAMINATE-CYTIDYLYLTRANSFERASE-RXN|EC:2.7.7.43 molecular_function owl:Class GO:0046287 biolink:NamedThing isoflavonoid metabolic process The chemical reactions and pathways involving isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids, containing a flavan skeleton. They are differentiated from flavonoids by the point of attachment of the aromatic ring group. tmpzr1t_l9r_go_relaxed.owl isoflavonoid metabolism biological_process owl:Class GO:0048260 biolink:NamedThing positive regulation of receptor-mediated endocytosis Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport. tmpzr1t_l9r_go_relaxed.owl activation of receptor mediated endocytosis|positive regulation of receptor mediated endocytosis|up-regulation of receptor mediated endocytosis|stimulation of receptor mediated endocytosis|upregulation of receptor mediated endocytosis|up regulation of receptor mediated endocytosis biological_process owl:Class GO:0008924 biolink:NamedThing malate dehydrogenase (quinone) activity Catalysis of the reaction: (S)-malate + a quinone = oxaloacetate + a quinol. tmpzr1t_l9r_go_relaxed.owl FAD-dependent malate dehydrogenase activity|(S)-malate:quinone oxidoreductase activity|(S)-malate:(quinone) oxidoreductase activity|MQO activity RHEA:46012|EC:1.1.5.4|MetaCyc:MALATE-DEHYDROGENASE-ACCEPTOR-RXN molecular_function owl:Class GO:0016901 biolink:NamedThing oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.1.5.- molecular_function owl:Class GO:0000149 biolink:NamedThing SNARE binding Binding to a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein. tmpzr1t_l9r_go_relaxed.owl SNAP receptor binding Reactome:R-HSA-265166|Reactome:R-HSA-376364|Reactome:R-HSA-374922|Reactome:R-HSA-380905|Reactome:R-HSA-210426|Reactome:R-HSA-380869|Reactome:R-HSA-9023173|Reactome:R-HSA-374899|Reactome:R-HSA-888589|Reactome:R-HSA-210430|Reactome:R-HSA-376357|Reactome:R-HSA-372529|Reactome:R-HSA-380574|Reactome:R-HSA-917744|Reactome:R-HSA-376369|Reactome:R-HSA-380901|Reactome:R-HSA-372505 molecular_function owl:Class GO:0031108 biolink:NamedThing holo-[acyl-carrier-protein] biosynthetic process The chemical reactions and pathways resulting in the formation of holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl holo-[acyl-carrier-protein] formation|holo-[acyl-carrier-protein] biosynthesis|holo-[acyl-carrier-protein] anabolism|holo-[acyl-carrier protein] biosynthesis|holo-[acyl-carrier-protein] synthesis biological_process owl:Class GO:2000924 biolink:NamedThing regulation of cellodextrin metabolic process Any process that modulates the frequency, rate or extent of cellodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellodextrin metabolism tt 2011-08-01T12:39:52Z biological_process owl:Class GO:0002695 biolink:NamedThing negative regulation of leukocyte activation Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of leucocyte activation|down-regulation of leukocyte activation|inhibition of leukocyte activation|negative regulation of immune cell activation|downregulation of leukocyte activation|down regulation of leukocyte activation biological_process owl:Class GO:0015137 biolink:NamedThing citrate transmembrane transporter activity Enables the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl tricarboxylate transport protein Reactome:R-HSA-433104|TC:2.A.29.7.2 molecular_function owl:Class GO:0015142 biolink:NamedThing tricarboxylic acid transmembrane transporter activity Enables the transfer of tricarboxylic acids from one side of a membrane to the other. Tricarboxylic acid are organic acids with three COOH groups. tmpzr1t_l9r_go_relaxed.owl sodium:dicarboxylate/tricarboxylate symporter activity Reactome:R-HSA-75849|Reactome:R-HSA-372449 molecular_function owl:Class GO:0018830 biolink:NamedThing gamma-hexachlorocyclohexane dehydrochlorinase activity Catalysis of the reaction: gamma-hexachlorocyclohexane + HCl = 1,3(R),4(S),5(S),6(R)-pentachlorocyclohexene. tmpzr1t_l9r_go_relaxed.owl EC:4.5.1.-|UM-BBD_enzymeID:e0359 molecular_function owl:Class GO:0034833 biolink:NamedThing geranylate CoA-transferase activity Catalysis of the reaction: geranylate + CoASH = trans-geranyl-CoA + OH-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1165 molecular_function owl:Class GO:0035008 biolink:NamedThing positive regulation of melanization defense response Any process that increases the rate or extent of the melanization defense response during injury or invasion. tmpzr1t_l9r_go_relaxed.owl stimulation of melanization defense response|activation of melanization defense response|positive regulation of melanization defence response|upregulation of melanization defense response|up regulation of melanization defense response|up-regulation of melanization defense response biological_process owl:Class GO:0097051 biolink:NamedThing establishment of protein localization to endoplasmic reticulum membrane The directed movement of a protein to a specific location in the endoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation in endoplasmic reticulum membrane|establishment of protein localization in endoplasmic reticulum membrane pr 2011-05-04T05:55:26Z biological_process owl:Class GO:0051081 biolink:NamedThing nuclear membrane disassembly The controlled breakdown of the nuclear membranes, for example during cellular division. tmpzr1t_l9r_go_relaxed.owl nuclear envelope breakdown|nuclear envelope degradation|nuclear envelope disassembly|nuclear envelope catabolism biological_process owl:Class GO:0102480 biolink:NamedThing 5-fluorocytosine deaminase activity Catalysis of the reaction: H+ + flucytosine + H2O <=> 5-fluorouracil + ammonium. tmpzr1t_l9r_go_relaxed.owl EC:3.5.4.1|MetaCyc:RXN-14129 molecular_function owl:Class GO:0051738 biolink:NamedThing xanthophyll binding Binding to xanthophylls, any of several neutral yellow to orange carotenoid pigments containing oxygen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061220 biolink:NamedThing mesonephric macula densa development The process whose specific outcome is the progression of the mesonephric macula densa over time, from its formation to the mature structure. The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T01:11:41Z biological_process owl:Class GO:0032292 biolink:NamedThing peripheral nervous system axon ensheathment The process in which a Schwann cell membrane closes around an axon in the peripheral nervous system. This can be a myelinating or a non-myelinating neuron-glial interaction. tmpzr1t_l9r_go_relaxed.owl ensheathment of axons in peripheral nervous system biological_process owl:Class GO:0004860 biolink:NamedThing protein kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019210 biolink:NamedThing kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016151 biolink:NamedThing nickel cation binding Binding to a nickel (Ni) cation. tmpzr1t_l9r_go_relaxed.owl nickel binding|Ni binding molecular_function owl:Class GO:0022608 biolink:NamedThing multicellular organism adhesion The attachment of a multicellular organism to a substrate or other organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060367 biolink:NamedThing sagittal suture morphogenesis The process in which the sagittal suture is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060363 biolink:NamedThing cranial suture morphogenesis The process in which any suture between cranial bones is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032537 biolink:NamedThing host-seeking behavior The specific behavior of an organism that are associated with finding a host organism; may include behavioral responses to light, temperature, or chemical emanations from the prospective host. tmpzr1t_l9r_go_relaxed.owl host-seeking behaviour biological_process owl:Class GO:0070853 biolink:NamedThing myosin VI binding Binding to a class VI myosin. The myosin VI heavy chain has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain, a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-13T01:28:36Z molecular_function owl:Class GO:0010933 biolink:NamedThing positive regulation of macrophage tolerance induction Any process that increases the frequency, rate, or extent of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045098 biolink:NamedThing type III intermediate filament A type of intermediate filament, typically made up of one or more of the proteins vimentin, desmin, glial fibrillary acidic protein (GFAP), and peripherin. Unlike the keratins, the type III proteins can form both homo- and heteropolymeric IF filaments. tmpzr1t_l9r_go_relaxed.owl vimentin|desmin|glial fibrillary acidic protein|peripherin|type III intermediate filament associated protein cellular_component owl:Class GO:0035433 biolink:NamedThing acetate transmembrane transport The process in which acetate is transported across a membrane. Acetate is the 2-carbon carboxylic acid ethanoic acid. tmpzr1t_l9r_go_relaxed.owl acetate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T10:59:01Z biological_process owl:Class GO:0006846 biolink:NamedThing acetate transport The directed movement of acetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000548 biolink:NamedThing negative regulation of dendritic cell dendrite assembly Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell dendrite assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of dendritic extension ebc 2011-04-03T07:22:01Z biological_process owl:Class GO:0052700 biolink:NamedThing ergothioneine catabolic process The chemical reactions and pathways resulting in the breakdown of ergothioneine, a naturally occurring metabolite of histidine with antioxidant properties. tmpzr1t_l9r_go_relaxed.owl (2S)-3-(2-mercapto-1H-imidazol-5-yl)-2-(trimethylazaniumyl)propanoate catabolic process|2-mercaptoergothioneine trimethylbetaine breakdown|2-mercaptoergothioneine trimethylbetaine degradation|2-mercaptoergothioneine trimethylbetaine catabolic process|ergothioneine breakdown|ergothioneine degradation|ergothioneine catabolism|2-mercaptoergothioneine trimethylbetaine catabolism ai 2011-08-01T03:56:22Z biological_process owl:Class GO:0015631 biolink:NamedThing tubulin binding Binding to monomeric or multimeric forms of tubulin, including microtubules. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048544 biolink:NamedThing recognition of pollen The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. tmpzr1t_l9r_go_relaxed.owl self incompatibility|pollen recognition|recognition or rejection of self pollen GO:0009857 biological_process owl:Class GO:0005463 biolink:NamedThing UDP-N-acetylgalactosamine transmembrane transporter activity Enables the transfer of a N-acetylgalactosamine from one side of a membrane to the other. N-acetylgalactosamine is a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905871 biolink:NamedThing regulation of protein localization to cell leading edge Any process that modulates the frequency, rate or extent of protein localization to cell leading edge. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in cell leading edge|regulation of protein localisation to cell leading edge|regulation of protein localisation in cell leading edge sl 2017-01-27T19:34:55Z biological_process owl:Class GO:0047790 biolink:NamedThing creatinine deaminase activity Catalysis of the reaction: creatinine + H2O = N-methylhydantoin + NH3. tmpzr1t_l9r_go_relaxed.owl creatinine desiminase activity|creatinine hydrolase|creatinine iminohydrolase activity EC:3.5.4.21|MetaCyc:CREATININE-DEAMINASE-RXN|RHEA:12681 molecular_function owl:Class GO:0007172 biolink:NamedThing signal complex assembly The aggregation, arrangement and bonding together of a set of components to form a complex capable of relaying a signal within a cell. tmpzr1t_l9r_go_relaxed.owl signal complex formation biological_process owl:Class GO:0033335 biolink:NamedThing anal fin development The process whose specific outcome is the progression of the anal fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097698 biolink:NamedThing telomere maintenance via base-excision repair A telomere maintenance process that occurs by base-excision repair of telomeric DNA in response to DNA damage. Telomeric sequences are particularly susceptible to oxidative DNA damage, due to their G-rich nature. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-07T11:15:39Z biological_process owl:Class GO:0005114 biolink:NamedThing type II transforming growth factor beta receptor binding Binding to a type II transforming growth factor beta receptor. tmpzr1t_l9r_go_relaxed.owl punt binding|type II TGF-beta binding|TGF-beta type II binding|transforming growth factor beta receptor type II binding|punt ligand|transforming growth factor beta ligand binding to type II receptor molecular_function owl:Class GO:0005160 biolink:NamedThing transforming growth factor beta receptor binding Binding to a transforming growth factor beta receptor. tmpzr1t_l9r_go_relaxed.owl activin|transforming growth factor beta receptor anchoring activity|TGF-beta receptor binding|TGFbeta receptor binding|inhibin|transforming growth factor beta ligand binding to type I receptor|transforming growth factor beta|transforming growth factor beta ligand binding to type II receptor|transforming growth factor beta receptor ligand molecular_function owl:Class GO:1901028 biolink:NamedThing regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway Any process that modulates the frequency, rate or extent of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of MOMP|regulation of mitochondrial outer membrane permeabilization pr 2012-06-20T09:19:16Z biological_process owl:Class GO:0018919 biolink:NamedThing gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolic process The chemical reactions and pathways involving gamma-1,2,3,4,5,6-hexachlorocyclohexane (also known as Lindane), the most common form of hexachlorohexane, a halogenated organic insecticide that has been used worldwide for agriculture and public health. tmpzr1t_l9r_go_relaxed.owl gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolism MetaCyc:GAMMAHEXCHLORDEG-PWY|UM-BBD_pathwayID:ghch biological_process owl:Class GO:0019497 biolink:NamedThing hexachlorocyclohexane metabolic process The chemical reactions and pathways involving hexachlorocyclohexane, a cyclohexane derivative with 6 chlorine atoms attached to the hexane ring. Hexachlorocyclohexane consists of a mixture of 8 different isomers and was used a commercial insecticide. It is persistent in the environment, causing serious soil pollution. tmpzr1t_l9r_go_relaxed.owl hexachlorocyclohexane metabolism biological_process owl:Class GO:0007302 biolink:NamedThing nurse cell nucleus anchoring Attachment of the nurse cell nucleus to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904219 biolink:NamedThing positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity Any process that activates or increases the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|up regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|up regulation of phosphatidylserine synthetase activity|upregulation of phosphatidylserine synthase activity|upregulation of CDP-diglyceride:serine phosphatidyltransferase activity|up regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|upregulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|up regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|positive regulation of PS synthase activity|positive regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|up-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|activation of PS synthase activity|activation of phosphatidylserine synthetase activity|activation of CDP-diglyceride-L-serine phosphatidyltransferase activity|up-regulation of CDP-diglyceride:serine phosphatidyltransferase activity|upregulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|activation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|up regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|positive regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|up-regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|activation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|activation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|upregulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|positive regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|positive regulation of phosphatidylserine synthase activity|positive regulation of CDP-diglyceride:serine phosphatidyltransferase activity|positive regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|positive regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|upregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|up regulation of phosphatidylserine synthase activity|activation of phosphatidylserine synthase activity|up-regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|up-regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|activation of CDPdiglyceride-serine O-phosphatidyltransferase activity|positive regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|up-regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|up-regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|up-regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|activation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|activation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|upregulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|positive regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|upregulation of PS synthase activity|up-regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|up regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|upregulation of phosphatidylserine synthetase activity|positive regulation of phosphatidylserine synthetase activity|activation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|up regulation of CDP-diglyceride:serine phosphatidyltransferase activity|up regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|activation of CDP-diglycerine-serine O-phosphatidyltransferase activity|up regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|activation of CDP-diglyceride:serine phosphatidyltransferase activity|up-regulation of phosphatidylserine synthetase activity|up regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|up-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|positive regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|upregulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|upregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|up-regulation of phosphatidylserine synthase activity|upregulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|upregulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|activation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|upregulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity|up regulation of PS synthase activity|positive regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|up regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|up regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|up-regulation of PS synthase activity Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of availability of the substrate rl 2015-05-15T08:18:35Z biological_process owl:Class GO:0032917 biolink:NamedThing polyamine acetylation The modification of polyamines by addition of acetyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022851 biolink:NamedThing GABA-gated chloride ion channel activity Enables the transmembrane transfer of a chloride ion by a channel that opens when GABA has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099095 biolink:NamedThing ligand-gated anion channel activity Enables the transmembrane transfer of an inorganic anion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903878 biolink:NamedThing 11-deoxycorticosterone binding Binding to 11-deoxycorticosterone. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:03:03Z molecular_function owl:Class GO:1990239 biolink:NamedThing steroid hormone binding Binding to a steroid hormone. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-15T09:26:18Z molecular_function owl:Class GO:0034322 biolink:NamedThing alcohol O-decanoyltransferase activity Catalysis of the reaction: decanoyl-CoA + an alcohol = CoA + a decyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034325 biolink:NamedThing O-decanoyltransferase activity Catalysis of the transfer of a decyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090239 biolink:NamedThing regulation of histone H4 acetylation Any process that modulates the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-20T03:48:09Z biological_process owl:Class GO:0003147 biolink:NamedThing neural crest cell migration involved in heart formation The characteristic movement of a cell from the dorsal ridge of the neural tube towards the heart and that contributes to heart formation. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T04:29:55Z biological_process owl:Class GO:0036021 biolink:NamedThing endolysosome lumen The volume enclosed by the membrane of an endolysosome. An endolysosome is a transient hybrid organelle formed by fusion of a late endosome with a lysosome. tmpzr1t_l9r_go_relaxed.owl endolysosomal lumen bf 2011-10-13T04:32:31Z cellular_component owl:Class GO:0035205 biolink:NamedThing positive regulation of lamellocyte differentiation Any process that activates or increases the frequency, rate or extent of lamellocyte differentiation. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes. tmpzr1t_l9r_go_relaxed.owl upregulation of lamellocyte differentiation|stimulation of lamellocyte differentiation|activation of lamellocyte differentiation|up-regulation of lamellocyte differentiation|up regulation of lamellocyte differentiation biological_process owl:Class GO:0035203 biolink:NamedThing regulation of lamellocyte differentiation Any process that modulates the frequency, rate or extent of lamellocyte differentiation. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904100 biolink:NamedThing positive regulation of protein O-linked glycosylation Any process that activates or increases the frequency, rate or extent of protein O-linked glycosylation. tmpzr1t_l9r_go_relaxed.owl up regulation of protein amino acid O-linked glycosylation|activation of protein O-linked glycosylation|up-regulation of protein O-linked glycosylation|positive regulation of protein amino acid O-linked glycosylation|up-regulation of protein amino acid O-linked glycosylation|up regulation of protein O-linked glycosylation|upregulation of protein O-linked glycosylation|activation of protein amino acid O-linked glycosylation|upregulation of protein amino acid O-linked glycosylation krc 2015-03-27T16:10:10Z biological_process owl:Class GO:0023026 biolink:NamedThing MHC class II protein complex binding Binding to a class II major histocompatibility complex. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0023023 biolink:NamedThing MHC protein complex binding Binding to a major histocompatibility complex. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0010223 biolink:NamedThing secondary shoot formation The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initating the development of lateral organs. tmpzr1t_l9r_go_relaxed.owl shoot branching|axillary shoot formation|axillary shoot system formation|auxiliary shoot formation biological_process owl:Class GO:0070454 biolink:NamedThing negative regulation of heme biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme. tmpzr1t_l9r_go_relaxed.owl downregulation of heme biosynthetic process|negative regulation of heme anabolism|down regulation of heme biosynthetic process|negative regulation of heme synthesis|negative regulation of heme formation|negative regulation of haem biosynthetic process|inhibition of heme biosynthetic process|negative regulation of heme biosynthesis|down-regulation of heme biosynthetic process biological_process owl:Class GO:0070453 biolink:NamedThing regulation of heme biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme. tmpzr1t_l9r_go_relaxed.owl regulation of haem biosynthetic process|regulation of haem biosynthesis|regulation of heme biosynthesis|regulation of heme formation|regulation of heme synthesis|regulation of heme anabolism biological_process owl:Class GO:0019978 biolink:NamedThing interleukin-3 binding Binding to interleukin-3. tmpzr1t_l9r_go_relaxed.owl IL-3 binding molecular_function owl:Class GO:0051877 biolink:NamedThing pigment granule aggregation in cell center The directed movement of dispersed pigment granules towards the center of the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051905 biolink:NamedThing establishment of pigment granule localization The directed movement of a pigment granule to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of pigment granule localisation biological_process owl:Class GO:0043174 biolink:NamedThing nucleoside salvage Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900865 biolink:NamedThing chloroplast RNA modification Any RNA modification that takes place in chloroplast. tmpzr1t_l9r_go_relaxed.owl RNA editing in chloroplast tb 2012-06-11T10:58:04Z biological_process owl:Class GO:0002565 biolink:NamedThing somatic diversification of immune receptors via gene conversion The process in which immune receptor genes are diversified through gene conversion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016444 biolink:NamedThing somatic cell DNA recombination Recombination occurring within or between DNA molecules in somatic cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001231 biolink:NamedThing regulation of protein localization to prospore membrane Any process that modulates the frequency, rate or extent of protein localization to prospore membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein-prospore membrane targeting|regulation of protein targeting to ascospore-type prospore membrane|regulation of protein localisation to prospore membrane|regulation of protein targeting to forespore membrane|regulation of protein targeting to FSM|regulation of protein targeting to prospore membrane mah 2011-11-21T04:13:30Z biological_process owl:Class GO:0034996 biolink:NamedThing RasGAP-Fyn-Lyn-Yes complex A protein complex that consists of a GTPase activator protein (GAP) for Ras and three Src family protein tyrosine kinases, Fyn, Lyn and Yes. The complex is involved in signaling upon platelet activation. tmpzr1t_l9r_go_relaxed.owl p21(ras)GAP-Fyn-Lyn-Yes complex, thrombin stimulated Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0021529 biolink:NamedThing spinal cord oligodendrocyte cell differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of oligodendrocytes. Oligodendrocytes are non-neuronal cells. The primary function of oligodendrocytes is the myelination of nerve axons in the central nervous system. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032701 biolink:NamedThing negative regulation of interleukin-18 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-18 production. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-18 production|inhibition of interleukin-18 production|downregulation of interleukin-18 production|down regulation of interleukin-18 production|negative regulation of interleukin-18 biosynthetic process|negative regulation of interleukin-18 secretion|negative regulation of IL-18 production GO:0045382|GO:0150121 biological_process owl:Class GO:0032661 biolink:NamedThing regulation of interleukin-18 production Any process that modulates the frequency, rate, or extent of interleukin-18 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-18 biosynthetic process|regulation of IL-18 production|regulation of interleukin-18 secretion GO:0045381|GO:0150120 biological_process owl:Class GO:0140486 biolink:NamedThing zinc ion sequestering activity The selective interaction of a protein with a zinc ion to prevent it from interacting with sensitive components of a biological system. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19700 pg 2020-06-29T09:21:42Z molecular_function owl:Class GO:1903042 biolink:NamedThing negative regulation of chondrocyte hypertrophy Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte hypertrophy. tmpzr1t_l9r_go_relaxed.owl downregulation of chondrocyte hypertrophy|down-regulation of chondrocyte hypertrophy|inhibition of chondrocyte hypertrophy|down regulation of chondrocyte hypertrophy mr 2014-05-20T21:23:19Z biological_process owl:Class GO:0061182 biolink:NamedThing negative regulation of chondrocyte development Any process that decreases the rate, frequency, or extent of the process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T08:33:05Z biological_process owl:Class GO:0050427 biolink:NamedThing 3'-phosphoadenosine 5'-phosphosulfate metabolic process The chemical reactions and pathways involving 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenosine 5'-phosphosulphate metabolism|3'-phosphoadenylyl-sulfate metabolic process|3'-phosphoadenosine 5'-phosphosulphate metabolic process|3'-phosphoadenosine 5'-phosphosulfate metabolism|phosphoadenosine phosphosulfate metabolic process|phosphoadenosine phosphosulfate metabolism|adenosine 3'-phosphate 5'-phosphosulfate metabolic process|PAPS metabolic process|PAPS metabolism|adenosine 3'-phosphate 5'-phosphosulfate metabolism|3'-phosphoadenylyl-sulfate metabolism MetaCyc:PWY-5340 biological_process owl:Class GO:0010533 biolink:NamedThing regulation of activation of Janus kinase activity Any process that modulates the frequency or rate of activation of JAK (Janus Activated Kinase) protein. The activation of JAK protein is the process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it. tmpzr1t_l9r_go_relaxed.owl regulation of tyrosine phosphorylation of JAK1 protein|regulation of activation of JAK2 protein|regulation of activation of JAK2 kinase activity|regulation of tyrosine phosphorylation of JAK protein|regulation of tyrosine phosphorylation of JAK2 protein|regulation of activation of JAK1 protein|regulation of activation of JAK protein|regulation of activation of JAK1 kinase activity GO:0010534|GO:0010532 biological_process owl:Class GO:0030174 biolink:NamedThing regulation of DNA-dependent DNA replication initiation Any process that modulates the frequency, rate or extent of initiation of DNA-dependent DNA replication; the process in which DNA becomes competent to replicate. In eukaryotes, replication competence is established in early G1 and lost during the ensuing S phase. tmpzr1t_l9r_go_relaxed.owl regulation of DNA replication initiation|DNA replication licensing|DNA replication licencing biological_process owl:Class GO:0005308 biolink:NamedThing creatine transmembrane transporter activity Enables the transfer of creatine from one side of a membrane to the other. Creatine is a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900795 biolink:NamedThing terrequinone A catabolic process The chemical reactions and pathways resulting in the breakdown of terrequinone A. tmpzr1t_l9r_go_relaxed.owl terrequinone A breakdown|terrequinone A degradation|terrequinone A catabolism di 2012-06-04T09:45:41Z biological_process owl:Class GO:0009424 biolink:NamedThing bacterial-type flagellum hook The portion of the bacterial-type flagellum that connects the filament to the basal body. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum hook|flagellar hook cellular_component owl:Class GO:0075137 biolink:NamedThing response to host redox environment Any process that results in a change in state or activity of the symbiont organism or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the redox environment in host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host redox environment Note that this term is used to annotate gene products of the symbiont. biological_process owl:Class GO:0080126 biolink:NamedThing ovary septum development The process whose specific outcome is the progression of the ovary septum over time, from its formation to the mature structure. The ovary septum is the thin partition that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s). tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-28T04:34:39Z biological_process owl:Class GO:1905328 biolink:NamedThing plant septum development The process whose specific outcome is the progression of a septum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dissepiment development tb 2016-07-21T18:25:49Z biological_process owl:Class GO:0030155 biolink:NamedThing regulation of cell adhesion Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl cell adhesion receptor regulator activity biological_process owl:Class GO:0035036 biolink:NamedThing sperm-egg recognition The initial contact step made between the sperm plasma membrane and outer layer of the egg during fertilization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008949 biolink:NamedThing oxalyl-CoA decarboxylase activity Catalysis of the reaction: H(+) + oxalyl-CoA = CO(2) + formyl-CoA. tmpzr1t_l9r_go_relaxed.owl oxalyl-CoA carboxy-lyase (formyl-CoA-forming)|oxalyl coenzyme A decarboxylase activity|oxalyl-CoA carboxy-lyase activity KEGG_REACTION:R01908|EC:4.1.1.8|MetaCyc:OXALYL-COA-DECARBOXYLASE-RXN|RHEA:19333 molecular_function owl:Class GO:0090155 biolink:NamedThing negative regulation of sphingolipid biosynthetic process Any process that decreases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl negative regulation of sphingolipid biosynthesis involved in cellular sphingolipid homeostasis tb 2009-12-08T03:33:39Z GO:0090157 biological_process owl:Class GO:0032679 biolink:NamedThing regulation of TRAIL production Any process that modulates the frequency, rate, or extent of TRAIL production. tmpzr1t_l9r_go_relaxed.owl regulation of TRAIL biosynthetic process GO:0045554 biological_process owl:Class GO:0043531 biolink:NamedThing ADP binding Binding to ADP, adenosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl adenosine diphosphate binding|adenosine 5'-diphosphate binding molecular_function owl:Class GO:0102090 biolink:NamedThing adrenaline O-methyltransferase activity Catalysis of the reaction: (R)-adrenaline(1+) + S-adenosyl-L-methionine <=> metanephrine + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10909 molecular_function owl:Class GO:0047733 biolink:NamedThing CDP-glucose 4,6-dehydratase activity Catalysis of the reaction: CDP-D-glucose = CDP-4-dehydro-6-deoxy-D-glucose + H(2)O. tmpzr1t_l9r_go_relaxed.owl CDPglucose 4,6-dehydratase activity|cytidine diphosphoglucose oxidoreductase activity|CDP-glucose 4,6-hydro-lyase (CDP-4-dehydro-6-deoxy-D-glucose-forming)|CDP-glucose 4,6-hydro-lyase activity|CDPglucose 4,6-hydro-lyase activity RHEA:17153|MetaCyc:CDP-GLUCOSE-46-DEHYDRATASE-RXN|EC:4.2.1.45|KEGG_REACTION:R02426 molecular_function owl:Class GO:0021916 biolink:NamedThing inductive cell-cell signaling between paraxial mesoderm and motor neuron precursors Short range signaling between cells of the paraxial mesoderm and motor neuron precursors in the spinal cord that specifies the fate of the motor column neuron precursors along the anterior-posterior axis. tmpzr1t_l9r_go_relaxed.owl inductive cell-cell signalling between paraxial mesoderm and motor neuron precursors biological_process owl:Class GO:0031129 biolink:NamedThing inductive cell-cell signaling Signaling at short range between cells of different ancestry and developmental potential that results in one cell or group of cells effecting a developmental change in the other. This is often done by secretion of proteins by one cell which affects the neighboring cells and causes them to adopt a certain fate. tmpzr1t_l9r_go_relaxed.owl inductive cell-cell signalling biological_process owl:Class GO:0061078 biolink:NamedThing positive regulation of prostaglandin secretion involved in immune response Any process that activates or increases the frequency, rate or extent of the regulated release of a prostaglandin from a cell and contributes to the immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of prostaglandin secretion during immune response dph 2010-04-08T01:53:45Z biological_process owl:Class GO:0014811 biolink:NamedThing negative regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097206 biolink:NamedThing nephrocyte filtration The process by which hemolymph is filtered based on size and charge through a nephrocyte filtration barrier formed by the basement membrane and nephrocyte diaphragm. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-03T03:13:31Z biological_process owl:Class GO:1905600 biolink:NamedThing regulation of receptor-mediated endocytosis involved in cholesterol transport Any process that modulates the frequency, rate or extent of receptor-mediated endocytosis involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|regulation of receptor-mediated endocytosis of LDL|regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport pr 2016-10-26T13:01:45Z biological_process owl:Class GO:0015732 biolink:NamedThing prostaglandin transport The directed movement of prostaglandins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120057 biolink:NamedThing regulation of small intestinal transit Any process that modulates the frequency, rate or extent of any small intestinal transit process, the migration of ingested material along the length of the small intestine. tmpzr1t_l9r_go_relaxed.owl regulation of small bowel transit|regulation of small intestine transit krc 2017-06-13T20:56:46Z biological_process owl:Class GO:0038096 biolink:NamedThing Fc-gamma receptor signaling pathway involved in phagocytosis An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes. tmpzr1t_l9r_go_relaxed.owl IgG-mediated phagocytosis|Fc gamma receptor-dependent phagocytosis|Fc-gamma receptor signalling pathway involved in phagocytosis|Fcgamma receptor-mediated phagocytosis bf 2012-02-16T05:26:25Z biological_process owl:Class GO:1900346 biolink:NamedThing negative regulation of methane biosynthetic process from methanethiol Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from methanethiol. tmpzr1t_l9r_go_relaxed.owl down regulation of methane biosynthetic process from methanethiol|downregulation of methane biosynthetic process from methanethiol|inhibition of methane biosynthetic process from methanethiol|down-regulation of methane biosynthetic process from methanethiol tt 2012-04-06T02:09:58Z biological_process owl:Class GO:0048086 biolink:NamedThing negative regulation of developmental pigmentation Any process that decreases the frequency, rate or extent of the developmental process that results in the deposition of coloring matter in an organism. tmpzr1t_l9r_go_relaxed.owl inhibition of pigmentation|downregulation of developmental pigmentation|down-regulation of developmental pigmentation|down regulation of developmental pigmentation biological_process owl:Class GO:0110032 biolink:NamedThing positive regulation of G2/MI transition of meiotic cell cycle Any signalling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to MI phase of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-12T20:40:54Z biological_process owl:Class GO:0032727 biolink:NamedThing positive regulation of interferon-alpha production Any process that activates or increases the frequency, rate, or extent of interferon-alpha production. tmpzr1t_l9r_go_relaxed.owl stimulation of interferon-alpha production|activation of interferon-alpha production|upregulation of interferon-alpha production|up-regulation of interferon-alpha production|up regulation of interferon-alpha production|positive regulation of interferon-alpha secretion|positive regulation of interferon-alpha biosynthetic process GO:0045356|GO:1902741 biological_process owl:Class GO:0005840 biolink:NamedThing ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. tmpzr1t_l9r_go_relaxed.owl free ribosome|ribosomal RNA|membrane bound ribosome Wikipedia:Ribosome|NIF_Subcellular:sao1429207766 GO:0033279 cellular_component owl:Class GO:1901512 biolink:NamedThing (-)-microperfuranone biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-microperfuranone. tmpzr1t_l9r_go_relaxed.owl (-)-microperfuranone synthesis|(-)-microperfuranone anabolism|(-)-microperfuranone biosynthesis|(-)-microperfuranone formation di 2012-10-18T06:54:18Z biological_process owl:Class GO:0034800 biolink:NamedThing trinitrophenol dihydride denitratase activity Catalysis of the reaction: trinitrophenol dihydride Meisenheimer complex (aci form) = 2,4-dinitrophenol hydride Meisenheimer complex + NO2. Trinitrophenol is also known as TNP and dinitrophenol is also known as DNP. tmpzr1t_l9r_go_relaxed.owl TNP dihydride denitratase activity|2,4,6-trinitrophenol dihydride denitratase activity UM-BBD_reactionID:r1067|EC:1.7.99.- molecular_function owl:Class GO:0021589 biolink:NamedThing cerebellum structural organization The process that contributes to the act of creating the structural organization of the cerebellum. This process pertains to the physical shaping of a rudimentary structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills. tmpzr1t_l9r_go_relaxed.owl cerebellum structural organisation biological_process owl:Class GO:0090397 biolink:NamedThing stigma papilla A plant cell papilla that is part of a stigma papilla cell. tmpzr1t_l9r_go_relaxed.owl Part of stigma papilla cell (PO:0025168). tb 2010-12-15T03:26:20Z cellular_component owl:Class GO:0090395 biolink:NamedThing plant cell papilla A cell projection that is a short, rounded projection from a plant epidermal cell. tmpzr1t_l9r_go_relaxed.owl Part of papilla cell (PO:0025166), which is a shoot epidermal cell (PO:0025165) in plants. Replaces the obsolete term papillae (PO:0002001). tb 2010-12-15T03:26:20Z cellular_component owl:Class GO:0015517 biolink:NamedThing galactose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: galactose(out) + H+(out) = galactose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl galactose:hydrogen symporter activity|lactose, galactose:hydrogen symporter activity molecular_function owl:Class GO:0005354 biolink:NamedThing galactose transmembrane transporter activity Enables the transfer of galactose from one side of a membrane to the other. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. tmpzr1t_l9r_go_relaxed.owl galactose/glucose (methylgalactoside) porter activity molecular_function owl:Class GO:0045258 biolink:NamedThing plasma membrane succinate dehydrogenase complex (ubiquinone) The enzyme, located in the plasma membrane, that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045257 biolink:NamedThing succinate dehydrogenase complex (ubiquinone) The enzyme that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905063 biolink:NamedThing regulation of vascular associated smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of VSMC differentiation|regulation of vascular smooth muscle cell differentiation rph 2016-03-21T11:14:53Z biological_process owl:Class GO:0062195 biolink:NamedThing microtubule bundle maintenance The organization process that preserves a microtubule bundle in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl dph 2019-12-09T19:10:30Z biological_process owl:Class GO:2000673 biolink:NamedThing positive regulation of motor neuron apoptotic process Any process that activates or increases the frequency, rate or extent of motor neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of motoneuron apoptosis|positive regulation of motor neuron apoptosis pr 2011-05-09T10:56:24Z biological_process owl:Class GO:2001237 biolink:NamedThing negative regulation of extrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of extrinsic apoptosis|negative regulation of extrinsic apoptotic signalling pathway pr 2011-11-24T01:30:11Z biological_process owl:Class GO:2001234 biolink:NamedThing negative regulation of apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of apoptotic signalling pathway pr 2011-11-24T01:20:54Z biological_process owl:Class GO:0106327 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-threonyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.147|RHEA:46880 hjd 2020-09-30T13:44:42Z molecular_function owl:Class GO:0055024 biolink:NamedThing regulation of cardiac muscle tissue development Any process that modulates the frequency, rate or extent of cardiac muscle tissue development. tmpzr1t_l9r_go_relaxed.owl regulation of heart muscle development biological_process owl:Class GO:1901057 biolink:NamedThing trimethylenediamine biosynthetic process The chemical reactions and pathways resulting in the formation of trimethylenediamine. tmpzr1t_l9r_go_relaxed.owl trimethylenediamine biosynthesis|trimethylenediamine synthesis|trimethylenediamine anabolism|trimethylenediamine formation yaf 2012-06-28T04:53:14Z biological_process owl:Class GO:1901055 biolink:NamedThing trimethylenediamine metabolic process The chemical reactions and pathways involving trimethylenediamine. tmpzr1t_l9r_go_relaxed.owl trimethylenediamine metabolism yaf 2012-06-28T04:52:42Z biological_process owl:Class GO:0106300 biolink:NamedThing protein-DNA covalent cross-linking repair The removal of covalent cross-link between DNA and a protein. tmpzr1t_l9r_go_relaxed.owl resolution of protein-DNA covalent cross-linking hjd 2020-08-26T14:23:42Z biological_process owl:Class GO:2000306 biolink:NamedThing positive regulation of photomorphogenesis Any process that activates or increases the frequency, rate or extent of photomorphogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of plant development in response to light dhl 2011-01-12T07:09:02Z biological_process owl:Class GO:0042641 biolink:NamedThing actomyosin Any complex of actin, myosin, and accessory proteins. tmpzr1t_l9r_go_relaxed.owl actomyosin complex|actomyosin structure cellular_component owl:Class GO:0019557 biolink:NamedThing histidine catabolic process to glutamate and formate The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including glutamate and formate. tmpzr1t_l9r_go_relaxed.owl histidine breakdown to glutamate and formate|histidine degradation to glutamate and formate biological_process owl:Class GO:0047917 biolink:NamedThing GDP-glucosidase activity Catalysis of the reaction: GDP-D-glucose + H(2)O = D-glucose + GDP + H(+). tmpzr1t_l9r_go_relaxed.owl guanosine diphosphate D-glucose glucohydrolase activity|GDPglucosidase activity|guanosine diphosphoglucosidase activity|GDP-glucose glucohydrolase activity|GDPglucose glucohydrolase activity EC:3.2.1.42|MetaCyc:GDP-GLUCOSIDASE-RXN|KEGG_REACTION:R00337|RHEA:15049 molecular_function owl:Class GO:2000643 biolink:NamedThing positive regulation of early endosome to late endosome transport Any process that activates or increases the frequency, rate or extent of early endosome to late endosome transport. tmpzr1t_l9r_go_relaxed.owl vk 2011-04-21T11:20:09Z biological_process owl:Class GO:0033911 biolink:NamedThing mycodextranase activity Catalysis of the endohydrolysis of 1,4-alpha-D-glucosidic linkages in alpha-D-glucans containing both 1,3- and 1,4-bonds. tmpzr1t_l9r_go_relaxed.owl 1,3-1,4-alpha-D-glucan 4-glucanohydrolase activity EC:3.2.1.61|MetaCyc:3.2.1.61-RXN molecular_function owl:Class GO:1902012 biolink:NamedThing poly(ribitol phosphate) teichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of poly(ribitol phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(ribitol phosphate) teichoic acid anabolism|poly(ribitol phosphate) teichoic acid formation|poly(ribitol phosphate) teichoic acid biosynthesis|poly(ribitol phosphate) teichoic acid synthesis tb 2013-03-22T15:43:40Z biological_process owl:Class GO:0001922 biolink:NamedThing B-1 B cell homeostasis The process of regulating the proliferation and elimination of B cells of the B-1 subset such that the total number of B-1 B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity. tmpzr1t_l9r_go_relaxed.owl B-1 B-lymphocyte homeostasis|B-1 B-cell homeostasis|B-1 B lymphocyte homeostasis Note that this term represents the return of B-1 B cell levels to stable numbers following an immune response, as well as the proliferation and elimination of B-1 B cells in a organism required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0001782 biolink:NamedThing B cell homeostasis The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl B lymphocyte homeostasis|B-lymphocyte homeostasis|B-cell homeostasis Note that this term represents the return of B cell levels to stable numbers following an immune response as well as the proliferation and elimination of B cells required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0072501 biolink:NamedThing cellular divalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of divalent inorganic anions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'cellular di-, tri-valent inorganic anion homeostasis ; GO:0030319' (sibling term 'cellular trivalent inorganic anion homeostasis' ; GO:0072502'). mah 2010-12-16T12:53:05Z biological_process owl:Class GO:0051165 biolink:NamedThing 2,5-dihydroxypyridine metabolic process The chemical reactions and pathways involving 2,5-dihydroxypyridine. tmpzr1t_l9r_go_relaxed.owl 2,5-dihydroxypyridine metabolism|pyridine-2,5-diol metabolic process biological_process owl:Class GO:1901342 biolink:NamedThing regulation of vasculature development Any process that modulates the frequency, rate or extent of vasculature development. tmpzr1t_l9r_go_relaxed.owl regulation of vascular system development bf 2012-09-06T09:16:15Z biological_process owl:Class GO:1900012 biolink:NamedThing positive regulation of corticotropin-releasing hormone receptor activity Any process that activates or increases the frequency, rate or extent of corticotropin-releasing hormone receptor activity. tmpzr1t_l9r_go_relaxed.owl up regulation of CRF receptor activity|positive regulation of corticotropin-releasing factor receptor activity|up regulation of corticotropin-releasing hormone receptor activity|positive regulation of CRF receptor activity|up regulation of CRH receptor activity|up regulation of adrenocorticotropin-releasing hormone receptor activity|up regulation of corticotropin-releasing factor receptor activity|positive regulation of CRH receptor activity|positive regulation of adrenocorticotropin-releasing hormone receptor activity pr 2012-01-10T02:27:30Z biological_process owl:Class GO:0150093 biolink:NamedThing amyloid-beta clearance by transcytosis The process in which amyloid-beta is removed from extracellular brain regions by cell surface receptor-mediated endocytosis, followed by transcytosis across the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl bc 2018-08-16T14:33:47Z biological_process owl:Class GO:0097242 biolink:NamedThing amyloid-beta clearance The process in which amyloid-beta is removed from extracellular brain regions by mechanisms involving cell surface receptors. tmpzr1t_l9r_go_relaxed.owl beta-amyloid clearance pr 2012-02-16T05:32:29Z biological_process owl:Class GO:0009422 biolink:NamedThing bacterial-type flagellum hook-filament junction The region of the bacterial-type flagellum where the hook and filament meet. tmpzr1t_l9r_go_relaxed.owl flagellar hook-filament junction cellular_component owl:Class GO:0072707 biolink:NamedThing cellular response to sodium dodecyl sulfate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium dodecyl sulfate (SDS) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to SDS mah 2012-04-11T03:35:15Z biological_process owl:Class GO:1901947 biolink:NamedThing 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolic process The chemical reactions and pathways involving 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate. tmpzr1t_l9r_go_relaxed.owl 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolism ms 2013-02-18T15:50:41Z biological_process owl:Class GO:0062051 biolink:NamedThing lipopolysaccharide transport system A protein-containing complex that functions to transport lipopolysaccharide from its site of synthesis at the cytoplasmic membrane across the periplasm to the outer membrane in an ATP-dependent manner. tmpzr1t_l9r_go_relaxed.owl dph 2018-06-04T18:44:40Z cellular_component owl:Class GO:0050169 biolink:NamedThing peptide-tryptophan 2,3-dioxygenase activity Catalysis of the reaction: peptide tryptophan + O2 = peptide formylkynurenine. tmpzr1t_l9r_go_relaxed.owl peptide-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)|tryptophan pyrrolooxygenase activity|pyrrolooxygenase activity|peptidyltryptophan 2,3-dioxygenase activity MetaCyc:PEPTIDE-TRYPTOPHAN-23-DIOXYGENASE-RXN|EC:1.13.11.26 molecular_function owl:Class GO:0046290 biolink:NamedThing isoflavonoid phytoalexin catabolic process The chemical reactions and pathways resulting in the breakdown of isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl isoflavonoid phytoalexin catabolism|isoflavonoid phytoalexin degradation|isoflavonoid phytoalexin breakdown biological_process owl:Class GO:0052316 biolink:NamedThing phytoalexin catabolic process The chemical reactions and pathways resulting in the breakdown of phytoalexins, any of a range of substances produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl phytoalexin catabolism biological_process owl:Class GO:1903287 biolink:NamedThing negative regulation of potassium ion import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion import across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl down regulation of potassium ion uptake|downregulation of potassium import|down regulation of potassium ion import|negative regulation of potassium ion uptake|down regulation of potassium import|downregulation of potassium ion import|inhibition of potassium import|down-regulation of potassium ion import|negative regulation of potassium ion import|inhibition of potassium ion import|downregulation of potassium ion uptake|negative regulation of potassium import|down-regulation of potassium ion uptake|inhibition of potassium ion uptake|down-regulation of potassium import rl 2014-08-11T14:26:24Z biological_process owl:Class GO:0014705 biolink:NamedThing C zone A region of the A band in which myosin-binding protein C is located and that can be seen by electron microscopy. This is a functional zone that also includes myosin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050938 biolink:NamedThing regulation of xanthophore differentiation Any process that modulates the frequency, rate or extent of xanthophore differentiation. tmpzr1t_l9r_go_relaxed.owl Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. biological_process owl:Class GO:0019099 biolink:NamedThing female germ-line sex determination The determination of sex and sexual phenotype in a female organism's germ line. tmpzr1t_l9r_go_relaxed.owl sex determination, female germ-line determination GO:0007544 biological_process owl:Class GO:0003859 biolink:NamedThing 3-hydroxybutyryl-CoA dehydratase activity Catalysis of the reaction: (R)-3-hydroxybutanoyl-CoA = crotonoyl-CoA + H(2)O. tmpzr1t_l9r_go_relaxed.owl (3R)-3-hydroxybutanoyl-CoA hydro-lyase (crotonoyl-CoA-forming)|enoyl coenzyme A hydrase (D)|D-3-hydroxybutyryl coenzyme A dehydratase activity|D-3-hydroxybutyryl-CoA dehydratase activity|crotonase activity|(3R)-3-hydroxybutanoyl-CoA hydro-lyase activity KEGG_REACTION:R03027|RHEA:17849|EC:4.2.1.55|MetaCyc:3-HYDROXBUTYRYL-COA-DEHYDRATASE-RXN molecular_function owl:Class GO:1903534 biolink:NamedThing regulation of lactose biosynthetic process Any process that modulates the frequency, rate or extent of lactose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of lactose synthesis|regulation of lactose anabolism|regulation of lactose formation|regulation of lactose biosynthesis mr 2014-10-08T16:26:05Z biological_process owl:Class GO:1904754 biolink:NamedThing positive regulation of vascular associated smooth muscle cell migration Any process that activates or increases the frequency, rate or extent of vascular associated smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of vascular smooth muscle cell migration|upregulation of vascular smooth muscle cell migration|up regulation of vascular smooth muscle cell migration|up-regulation of vascular associated smooth muscle cell migration|up-regulation of vascular smooth muscle cell migration|upregulation of vascular associated smooth muscle cell migration|up regulation of vascular associated smooth muscle cell migration|activation of vascular associated smooth muscle cell migration|activation of vascular smooth muscle cell migration rph 2015-10-19T15:50:05Z biological_process owl:Class GO:0014911 biolink:NamedThing positive regulation of smooth muscle cell migration Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060265 biolink:NamedThing positive regulation of respiratory burst involved in inflammatory response Any process that increases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl positive regulation of respiratory burst involved in acute inflammatory response biological_process owl:Class GO:0102099 biolink:NamedThing FAD-dependent urate hydroxylase activity Catalysis of the reaction: 7,9-dihydro-1H-purine-2,6,8(3H)-trione + NADH + H+ + O2 <=> 5-hydroxyisouric acid + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11186|RHEA:27329|EC:1.14.13.113 molecular_function owl:Class GO:1901238 biolink:NamedThing ABC-type tungstate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + tungstate(in) = ADP + phosphate + tungstate(out). tmpzr1t_l9r_go_relaxed.owl tungstate transmembrane transporter activity|tungstate transmembrane-transporting ATPase activity|ATPase-coupled tungstate transmembrane transporter activity RHEA:35027|EC:7.3.2.6 jl 2012-08-07T14:47:36Z GO:1901237 molecular_function owl:Class GO:0060011 biolink:NamedThing Sertoli cell proliferation The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000486 biolink:NamedThing negative regulation of glutamine transport Any process that stops, prevents or reduces the frequency, rate or extent of glutamine transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of L-glutamine transport bf 2011-03-11T09:33:07Z biological_process owl:Class GO:0002853 biolink:NamedThing negative regulation of T cell mediated cytotoxicity directed against tumor cell target Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell mediated cytotoxicity directed against a tumor cell target. tmpzr1t_l9r_go_relaxed.owl inhibition of T cell mediated cytotoxicity directed against tumor cell target|down-regulation of T cell mediated cytotoxicity directed against tumor cell target|down regulation of T cell mediated cytotoxicity directed against tumor cell target|downregulation of T cell mediated cytotoxicity directed against tumor cell target biological_process owl:Class GO:0002841 biolink:NamedThing negative regulation of T cell mediated immune response to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of a T cell mediated immune response to tumor cell. tmpzr1t_l9r_go_relaxed.owl down regulation of T cell mediated immune response to tumor cell|negative regulation of T lymphocyte mediated immune response to tumor cell|downregulation of T cell mediated immune response to tumor cell|negative regulation of T cell mediated immune response to tumour cell|negative regulation of T-cell mediated immune response to tumor cell|down-regulation of T cell mediated immune response to tumor cell|inhibition of T cell mediated immune response to tumor cell|negative regulation of T-lymphocyte mediated immune response to tumor cell biological_process owl:Class GO:1902699 biolink:NamedThing pentose catabolic process to acetate The chemical reactions and pathways resulting in the breakdown of pentose to acetate. tmpzr1t_l9r_go_relaxed.owl pentose degradation to acetate|pentose breakdown to acetate|acidogenesis|pentose catabolism to acetate tb 2014-02-19T18:28:38Z GO:1990289 biological_process owl:Class GO:0051891 biolink:NamedThing positive regulation of cardioblast differentiation Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardioblast differentiation|up regulation of cardioblast differentiation|activation of cardioblast differentiation|stimulation of cardioblast differentiation|upregulation of cardioblast differentiation biological_process owl:Class GO:0072325 biolink:NamedThing vulval cell fate commitment The process in which the cellular identity of nematode vulval cells is acquired and determined. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed adult vulva, which is the egg-laying organ of female and hermaphrodite nematodes. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-01T02:02:16Z biological_process owl:Class GO:0051759 biolink:NamedThing sister chromosome movement towards spindle pole involved in meiotic sister chromatid segregation The directed movement of sister chromosomes from the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during meiosis II. tmpzr1t_l9r_go_relaxed.owl meiosis II, sister chromosome movement towards spindle pole|sister chromosome movement towards spindle pole during meiosis II biological_process owl:Class GO:1904798 biolink:NamedThing positive regulation of core promoter binding Any process that activates or increases the frequency, rate or extent of core promoter binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of core promoter binding|up regulation of core promoter binding|upregulation of core promoter binding|activation of core promoter binding nc 2015-11-09T12:32:38Z biological_process owl:Class GO:0019755 biolink:NamedThing one-carbon compound transport The directed movement of one-carbon compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl one carbon compound transport biological_process owl:Class GO:1901713 biolink:NamedThing negative regulation of urea catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of urea catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of urea decomposition|down-regulation of urea catabolic process|down regulation of urea catabolic process|down regulation of urea decomposition|inhibition of urea degradation|down regulation of urea catabolism|inhibition of urea catabolism|inhibition of urea decomposition|downregulation of urea catabolic process|down-regulation of urea breakdown|down-regulation of urea decomposition|down regulation of urea breakdown|negative regulation of urea degradation|inhibition of urea breakdown|inhibition of urea catabolic process|down-regulation of urea catabolism|negative regulation of urea catabolism|down-regulation of urea degradation|downregulation of urea decomposition|down regulation of urea degradation|downregulation of urea breakdown|negative regulation of urea breakdown|downregulation of urea catabolism|downregulation of urea degradation mcc 2012-12-19T16:12:13Z biological_process owl:Class GO:2000256 biolink:NamedThing positive regulation of male germ cell proliferation Any process that activates or increases the frequency, rate or extent of male germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-18T09:29:50Z biological_process owl:Class GO:0044775 biolink:NamedThing DNA polymerase III, beta sliding clamp processivity factor complex A subcomplex of the DNA polymerase III holoenzyme which is responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. The complex is homodimeric in prokaryotes, and homotrimeric in other species. tmpzr1t_l9r_go_relaxed.owl jl 2013-03-13T13:59:48Z cellular_component owl:Class GO:0044796 biolink:NamedThing DNA polymerase processivity factor complex A protein complex which is capable of increasing the processivity of nucleotide polymerization by DNA polymerase as a part of DNA replication. tmpzr1t_l9r_go_relaxed.owl jl 2013-08-28T11:16:14Z cellular_component owl:Class GO:1903090 biolink:NamedThing pyridoxal transmembrane transport The process in which pyridoxal is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl al 2014-06-03T10:41:13Z biological_process owl:Class GO:0035461 biolink:NamedThing vitamin transmembrane transport The process in which a vitamin is transported across a membrane. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl vitamin membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-19T10:21:41Z biological_process owl:Class GO:0002199 biolink:NamedThing zona pellucida receptor complex A multisubunit complex comprising the chaperonin-containing T-complex and several other components involved in mediating sperm-oocyte Interaction. tmpzr1t_l9r_go_relaxed.owl sperm protein complex I hjd 2011-12-23T01:33:23Z cellular_component owl:Class GO:1901352 biolink:NamedThing negative regulation of phosphatidylglycerol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of phosphatidylglycerol anabolism|down regulation of phosphatidylglycerol biosynthesis|downregulation of phosphatidylglycerol synthesis|down-regulation of phosphatidylglycerol formation|negative regulation of phosphatidylglycerol biosynthesis|inhibition of phosphatidylglycerol anabolism|down regulation of phosphatidylglycerol synthesis|inhibition of phosphatidylglycerol biosynthesis|inhibition of phosphatidylglycerol synthesis|negative regulation of phosphatidylglycerol formation|down regulation of phosphatidylglycerol formation|down-regulation of phosphatidylglycerol biosynthetic process|downregulation of phosphatidylglycerol biosynthesis|negative regulation of phosphatidylglycerol synthesis|down-regulation of phosphatidylglycerol synthesis|downregulation of phosphatidylglycerol biosynthetic process|inhibition of phosphatidylglycerol biosynthetic process|down-regulation of phosphatidylglycerol biosynthesis|negative regulation of phosphatidylglycerol anabolism|downregulation of phosphatidylglycerol formation|down regulation of phosphatidylglycerol biosynthetic process|down-regulation of phosphatidylglycerol anabolism|down regulation of phosphatidylglycerol anabolism|inhibition of phosphatidylglycerol formation dgf 2012-09-12T20:47:53Z biological_process owl:Class GO:1902785 biolink:NamedThing cellular response to undecane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an undecane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T13:39:24Z biological_process owl:Class GO:0030578 biolink:NamedThing PML body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of PML bodies, a class of nuclear body; they react against SP100 auto-antibodies (PML = promyelocytic leukemia). tmpzr1t_l9r_go_relaxed.owl PML body organisation|PML body organization and biogenesis See also the cellular component term 'PML body ; GO:0016605'. biological_process owl:Class GO:0035519 biolink:NamedThing protein K29-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 29 of the ubiquitin monomers, is added to a protein. K29-linked ubiquitination targets the substrate protein for degradation. tmpzr1t_l9r_go_relaxed.owl protein K29-linked polyubiquitination bf 2010-05-04T04:25:48Z biological_process owl:Class GO:0032259 biolink:NamedThing methylation The process in which a methyl group is covalently attached to a molecule. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Methylation biological_process owl:Class GO:1905699 biolink:NamedThing regulation of xenobiotic detoxification by transmembrane export across the plasma membrane Any process that modulates the frequency, rate or extent of xenobiotic transmembrane export. A xenobiotic is a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl regulation of drug transmembrane export|regulation of xenobiotic transmembrane export https://github.com/geneontology/go-ontology/issues/19460|https://github.com/geneontology/go-ontology/issues/17083 sl 2016-11-15T16:46:28Z biological_process owl:Class GO:1990673 biolink:NamedThing intrinsic component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane The component of the ERGIC membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic component of endoplasmic reticulum-Golgi intermediate compartment membrane bhm 2015-03-02T11:44:46Z cellular_component owl:Class GO:0045989 biolink:NamedThing positive regulation of striated muscle contraction Any process that activates or increases the frequency, rate or extent of striated muscle contraction. tmpzr1t_l9r_go_relaxed.owl up regulation of striated muscle contraction|stimulation of striated muscle contraction|activation of striated muscle contraction|up-regulation of striated muscle contraction|upregulation of striated muscle contraction biological_process owl:Class GO:0043569 biolink:NamedThing negative regulation of insulin-like growth factor receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of insulin-like growth factor receptor signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of IGF receptor signaling pathway|down-regulation of insulin-like growth factor receptor signaling pathway|down regulation of insulin-like growth factor receptor signaling pathway|negative regulation of insulin-like growth factor receptor signalling pathway|downregulation of insulin-like growth factor receptor signaling pathway|negative regulation of IGF receptor signalling pathway|inhibition of insulin-like growth factor receptor signaling pathway biological_process owl:Class GO:0002083 biolink:NamedThing 4-hydroxybenzoate decaprenyltransferase activity Catalysis of the reaction: all-trans-decaprenyl diphosphate + 4-hydroxybenzoate = 3-decaprenyl-4-hydroxybenzoate + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:44564|MetaCyc:RXN-9230|EC:2.5.1.39|Reactome:R-HSA-2162192 molecular_function owl:Class GO:0046295 biolink:NamedThing glycolate biosynthetic process The chemical reactions and pathways resulting in the formation of glycolate, the anion of hydroxyethanoic acid (glycolic acid). tmpzr1t_l9r_go_relaxed.owl glycolate formation|glycolate synthesis|glycolate biosynthesis|glycolate anabolism biological_process owl:Class GO:1905887 biolink:NamedThing autoinducer AI-2 transmembrane transport The process in which (2R,4S)-2-methyltetrahydrofuran-2,3,3,4-tetrol (autoinducer AI-2) is transported across a membrane. AI-2 is produced by prokaryotes and is believed to play a role in quorum sensing. tmpzr1t_l9r_go_relaxed.owl autoinducer 2 transmembrane transport|(2R,4S)-2-methyltetrahydrofuran-2,3,3,4-tetrol transmembrane transport|AI-2 transmembrane transport dos 2017-01-31T14:34:50Z biological_process owl:Class GO:0090626 biolink:NamedThing plant epidermis morphogenesis The process in which the anatomical structures of the plant epidermis are generated and organized. tmpzr1t_l9r_go_relaxed.owl tb 2015-01-29T14:54:03Z biological_process owl:Class GO:0110141 biolink:NamedThing L-glutamate import into mitochondrion The process in which L-glutamate is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl kmv 2019-04-24T19:13:46Z biological_process owl:Class GO:0044382 biolink:NamedThing CLRC complex localization to heterochromatin The process by which a CLRC complex is transported to, or maintained in, heterochromatin. CLRC complex is an active cullin-dependent E3 ubiquitin ligase complex essential for heterochromatin assembly by RNAi and histone H3K9 methylation. tmpzr1t_l9r_go_relaxed.owl CLRC ubiquitin ligase complex localisation to heterochromatin|CLRC ubiquitin ligase complex localization to heterochromatin jl 2011-12-13T03:37:18Z biological_process owl:Class GO:0039599 biolink:NamedThing cleavage by virus of host mRNA Any process in which a host pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner by a viral endoribonuclease. tmpzr1t_l9r_go_relaxed.owl viral endoribonuclease activity involved in degradation of host mRNA|host mRNA cleavage by viral endoribonuclease bf 2012-07-04T05:09:08Z biological_process owl:Class GO:0033629 biolink:NamedThing negative regulation of cell adhesion mediated by integrin Any process that stops, prevents, or reduces the frequency, rate, or extent of cell adhesion mediated by integrin. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell adhesion mediated by integrin complex biological_process owl:Class GO:0099509 biolink:NamedThing regulation of presynaptic cytosolic calcium ion concentration Any process that regulates the concentration of calcium in the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl regulation of presynaptic cytosolic calcium levels biological_process owl:Class GO:2000935 biolink:NamedThing positive regulation of cellotriose metabolic process Any process that activates or increases the frequency, rate or extent of cellotriose metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellotriose metabolism tt 2011-08-01T12:44:24Z biological_process owl:Class GO:0019473 biolink:NamedThing L-lysine catabolic process to glutarate, by acetylation The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including glutarate, by acetylation. tmpzr1t_l9r_go_relaxed.owl L-lysine breakdown to glutarate, by acetylation|L-lysine degradation to glutarate, by acetylation MetaCyc:LYSDEGII-PWY biological_process owl:Class GO:0030228 biolink:NamedThing lipoprotein particle receptor activity Combining with a lipoprotein particle and delivering the lipoprotein particle into the cell via endocytosis. A lipoprotein particle, also known as a lipoprotein, is a clathrate complex consisting of a lipid enwrapped in a protein host without covalent binding in such a way that the complex has a hydrophilic outer surface consisting of all the protein and the polar ends of any phospholipids. tmpzr1t_l9r_go_relaxed.owl plasma lipoprotein particle receptor activity|lipoprotein receptor activity This term is intended for cell surface receptors that bind and internalize a lipoprotein particle. For members of the lipoprotein receptor family that transduce a signal rather than endocytose their ligand, consider instead the terms 'signaling receptor activity ; GO:0038023' and its children, or 'reelin receptor activity ; GO:0038025'. molecular_function owl:Class GO:0021731 biolink:NamedThing trigeminal motor nucleus development The process whose specific outcome is the progression of the trigeminal motor nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098832 biolink:NamedThing peri-centrosomal recycling endosome A recycling endosome that is organized around the microtubule organizing center, close to the nucleus. This is the main recycling endosome of most cells. It receives input from the Golgi as well as recycled molecules from early endosomes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990739 biolink:NamedThing granulosa cell proliferation The multiplication or reproduction of granulosa cells, resulting in the expansion of the granulosa cells population. A granulosa cell is a supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-06T18:56:04Z biological_process owl:Class GO:0010015 biolink:NamedThing root morphogenesis The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050463 biolink:NamedThing nitrate reductase [NAD(P)H] activity Catalysis of the reaction: nitrite + NAD(P)+ + H2O = nitrate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl assimilatory nitrate reductase activity|nitrite:NAD(P)+ oxidoreductase activity|NAD(P)H2:nitrate oxidoreductase activity|nitrate reductase (reduced nicotinamide adenine dinucleotide (phosphate)) activity|NAD(P)H:nitrate oxidoreductase activity|nitrate reductase NAD(P)H activity|NAD(P)H bispecific nitrate reductase activity|assimilatory NAD(P)H-nitrate reductase activity|nitrate reductase [NAD(P)H2]|NAD(P)H-nitrate reductase activity EC:1.7.1.2 molecular_function owl:Class GO:0009581 biolink:NamedThing detection of external stimulus The series of events in which an external stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of external stimulus biological_process owl:Class GO:0046949 biolink:NamedThing fatty-acyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty-acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group. tmpzr1t_l9r_go_relaxed.owl fatty-acyl-CoA formation|fatty-acyl-CoA biosynthesis|fatty-acyl-CoA anabolism|fatty acyl CoA biosynthetic process|fatty-acyl-CoA synthesis biological_process owl:Class GO:0005146 biolink:NamedThing leukemia inhibitory factor receptor binding Binding to an leukemia inhibitory factor receptor. tmpzr1t_l9r_go_relaxed.owl leukemia inhibitory factor receptor ligand|leukemia inhibitory factor molecular_function owl:Class GO:1903184 biolink:NamedThing L-dopa metabolic process The chemical reactions and pathways involving L-dopa. tmpzr1t_l9r_go_relaxed.owl L-dopa metabolism bf 2014-07-14T15:06:00Z biological_process owl:Class GO:0021837 biolink:NamedThing motogenic signaling involved in postnatal olfactory bulb interneuron migration The signaling that results in the stimulation of cell movement in the rostral migratory stream. tmpzr1t_l9r_go_relaxed.owl motogenic signalling involved in postnatal olfactory bulb interneuron migration biological_process owl:Class GO:0045684 biolink:NamedThing positive regulation of epidermis development Any process that activates or increases the frequency, rate or extent of epidermis development. tmpzr1t_l9r_go_relaxed.owl positive regulation of hypodermis development|up-regulation of epidermis development|stimulation of epidermis development|upregulation of epidermis development|positive regulation of epidermal development|up regulation of epidermis development|activation of epidermis development biological_process owl:Class GO:0004464 biolink:NamedThing leukotriene-C4 synthase activity Catalysis of the reaction: leukotriene C(4) = glutathione + leukotriene A(4). tmpzr1t_l9r_go_relaxed.owl LTC4 synthase activity|leukotriene A4:glutathione S-leukotrienyltransferase activity|(7E,9E,11Z,14Z)-(5S,6R)-5,6-epoxyicosa-7,9,11,14-tetraenoate:glutathione leukotriene-transferase (epoxide-ring-opening)|leukotriene C(4) synthetase activity|leukotriene A(4):glutathione S-leukotrienyltransferase activity|(7E,9E,11Z,14Z)-(5S,6R)-6-(glutathion-S-yl)-5-hydroxyicosa-7,9,11,14-tetraenoate glutathione-lyase (epoxide-forming)|LTC(4) synthase activity|LTC4 synthetase activity|leukotriene-C4 glutathione-lyase (leukotriene-A4-forming)|LTC(4) synthetase activity|leukotriene C4 synthetase activity Reactome:R-HSA-266050|RHEA:17617|EC:4.4.1.20|KEGG_REACTION:R03059|MetaCyc:LEUKOTRIENE-C4-SYNTHASE-RXN Note that this function was EC:2.5.1.37. molecular_function owl:Class GO:1900519 biolink:NamedThing negative regulation of response to pullulan Any process that stops, prevents or reduces the frequency, rate or extent of response to pullulan. tmpzr1t_l9r_go_relaxed.owl downregulation of response to pullulan|down-regulation of response to pullulan|down regulation of response to pullulan|inhibition of response to pullulan tt 2012-05-02T04:12:09Z biological_process owl:Class GO:0055046 biolink:NamedThing microgametogenesis The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure. tmpzr1t_l9r_go_relaxed.owl pollen development from the microspore Wikipedia:Microgametogenesis biological_process owl:Class GO:1901626 biolink:NamedThing regulation of postsynaptic membrane organization Any process that modulates the frequency, rate or extent of postsynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic membrane organisation|regulation of post-synaptic membrane organization ans 2012-11-15T11:40:15Z biological_process owl:Class GO:0050107 biolink:NamedThing monoterpenol O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + a monoterpenol = CoA + a monoterpenol acetate ester. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:monoterpenol O-acetyltransferase activity|menthol transacetylase activity EC:2.3.1.69|MetaCyc:MONOTERPENOL-O-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0035212 biolink:NamedThing cell competition in a multicellular organism Competitive interactions within multicellular organisms between cell populations that differ in growth rates, leading to the elimination of the slowest-growing cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000315 biolink:NamedThing positive regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation vk 2011-01-18T10:27:19Z biological_process owl:Class GO:0097231 biolink:NamedThing cell motility in response to calcium ion Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another as a result of a calcium ion stimulus. tmpzr1t_l9r_go_relaxed.owl Ca2+ facilitation of cell motility|calcium ion facilitation of cell motility pr 2012-01-25T04:42:45Z biological_process owl:Class GO:1901315 biolink:NamedThing negative regulation of histone H2A K63-linked ubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl down regulation of histone H2A K63-linked ubiquitination|inhibition of histone H2A K63-linked ubiquitination|down-regulation of histone H2A K63-linked ubiquitination|downregulation of histone H2A K63-linked ubiquitination tb 2012-08-22T20:29:24Z biological_process owl:Class GO:1900283 biolink:NamedThing negative regulation of cellobiose catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellobiose catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of cellobiose catabolism|negative regulation of cellobiose catabolism|downregulation of cellobiose catabolic process|inhibition of cellobiose catabolic process|down regulation of cellobiose catabolism|inhibition of cellobiose catabolism|down-regulation of cellobiose catabolism|down-regulation of cellobiose catabolic process|down regulation of cellobiose catabolic process tt 2012-04-05T12:29:00Z biological_process owl:Class GO:0099040 biolink:NamedThing ceramide translocation The movement of a ceramide molecule from one leaflet of a membrane bilayer to the opposite leaflet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099039 biolink:NamedThing sphingolipid translocation The movement of a sphingolipid molecule from one leaflet of a membrane bilayer to the opposite leaflet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000150 biolink:NamedThing regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T07:11:11Z biological_process owl:Class GO:0098884 biolink:NamedThing postsynaptic neurotransmitter receptor internalization A receptor-mediated endocytosis process that results in the internalization of a neurotransmitter receptor from the postsynaptic membrane endocytic zone into an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl postsynaptic neurotransmitter receptor endocytosis https://github.com/geneontology/synapse/issues/230 biological_process owl:Class GO:0005787 biolink:NamedThing signal peptidase complex A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900717 biolink:NamedThing negative regulation of violaceol II biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of violaceol II biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of violaceol II formation|inhibition of violaceol II formation|down-regulation of violaceol II biosynthesis|down-regulation of violaceol II biosynthetic process|inhibition of violaceol II synthesis|downregulation of violaceol II biosynthetic process|downregulation of violaceol II anabolism|inhibition of violaceol II anabolism|down regulation of violaceol II biosynthesis|negative regulation of violaceol II biosynthesis|inhibition of violaceol II biosynthesis|down regulation of violaceol II anabolism|down regulation of violaceol II synthesis|negative regulation of violaceol II synthesis|downregulation of violaceol II synthesis|down regulation of violaceol II biosynthetic process|down regulation of violaceol II formation|down-regulation of violaceol II formation|downregulation of violaceol II biosynthesis|inhibition of violaceol II biosynthetic process|down-regulation of violaceol II anabolism|down-regulation of violaceol II synthesis|downregulation of violaceol II formation|negative regulation of violaceol II anabolism di 2012-05-22T05:05:58Z biological_process owl:Class GO:0038151 biolink:NamedThing CCL2-activated CCR2 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL2 to a C-C chemokine type 2 receptor (CCR2) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL2/CCR2 signaling pathway bf 2012-05-11T11:41:58Z biological_process owl:Class GO:0004025 biolink:NamedThing alcohol dehydrogenase activity, iron-dependent Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+, requiring the presence of iron. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004575 biolink:NamedThing sucrose alpha-glucosidase activity Catalysis of the reaction: sucrose + H2O = alpha-D-glucose + beta-D-fructose. tmpzr1t_l9r_go_relaxed.owl intestinal sucrase activity|sucrase(invertase)|sucrase-isomaltase activity|sucrase activity|beta-D-fructofuranosyl alpha-D-glucopyranoside hydrolysis|sucrose-alpha-D-glucohydrolase activity|sucrose alpha-glucohydrolase activity|sucrose alpha-D-glucohydrolase activity|sucrose hydrolysis|alpha-D-glucopyranosyl beta-D-fructofuranoside hydrolysis EC:3.2.1.48|RHEA:33795|MetaCyc:RXN-1461|KEGG_REACTION:R00802|Reactome:R-HSA-189069|Reactome:R-HSA-5659926 molecular_function owl:Class GO:0150032 biolink:NamedThing positive regulation of protein localization to lysosome Any process that activates or increases the frequency, rate or extent of protein localization to lysosome. tmpzr1t_l9r_go_relaxed.owl bc 2018-02-06T17:11:02Z biological_process owl:Class GO:0014022 biolink:NamedThing neural plate elongation The process in which the neural plate is shaped by the intrinsic movement of the epidermal and neural plate regions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021820 biolink:NamedThing extracellular matrix organization in marginal zone involved in cerebral cortex radial glia guided migration The process that leads to the deposition of extracellular matrix signals in the marginal zone of the developing cerebral cortex. This extracellular matrix controls the movement of migrating cells. In mammals, the matrix is modified by Cajal-Retzius cells. tmpzr1t_l9r_go_relaxed.owl organization of extracellular matrix in the marginal zone involved in cerebral cortex glial-mediated radial migration|extracellular matrix organisation in marginal zone involved in cerebral cortex radial glia guided migration biological_process owl:Class GO:0032363 biolink:NamedThing FMN catabolic process The chemical reactions and pathways resulting in the breakdown of FMN, riboflavin 5'-(dihydrogen phosphate), a coenzyme for a number of oxidative enzymes including NADH dehydrogenase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070582 biolink:NamedThing theta DNA replication A DNA-dependent DNA replication process in which a double-stranded DNA molecule is synthesized from a circular duplex template. tmpzr1t_l9r_go_relaxed.owl theta replication mah 2009-04-22T02:54:50Z biological_process owl:Class GO:0061562 biolink:NamedThing cranial ganglion structural organization The process that contributes to creating the structural organization of a cranial ganglion. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl cranial ganglia structural organization dph 2013-07-10T09:10:52Z biological_process owl:Class GO:0061555 biolink:NamedThing ganglion structural organization The process that contributes to creating the structural organization of a ganglion. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl ganglia structural organization dph 2013-07-10T08:54:39Z biological_process owl:Class GO:0032264 biolink:NamedThing IMP salvage Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006188 biolink:NamedThing IMP biosynthetic process The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate. tmpzr1t_l9r_go_relaxed.owl IMP formation|IMP biosynthesis|IMP synthesis|IMP anabolism biological_process owl:Class GO:0002333 biolink:NamedThing transitional one stage B cell differentiation The process in which immature B cells from the bone marrow acquire the specialized features of T1 stage B cells in the spleen. T1 stage B cells do not express either CD23 or CD21. tmpzr1t_l9r_go_relaxed.owl transitional one stage B-lymphocyte differentiation|transitional one stage B lymphocyte differentiation|T1 stage B cell differentiation|transitional one stage B-cell differentiation|transitional one stage B cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002332 biolink:NamedThing transitional stage B cell differentiation The process in which immature B cells from the bone marrow become mature B cells in the spleen. Transitional stage B cells are subdivided into transitional one (T1) and transitional two (T2) stages and are short-lived and functionally incompetent. tmpzr1t_l9r_go_relaxed.owl transitional stage B cell development|transitional stage B-cell differentiation|transitional stage B-lymphocyte differentiation|transitional stage B lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0060661 biolink:NamedThing submandibular salivary gland formation The developmental process pertaining to the initial formation of a submandibular salivary gland. This process begins with a thickening of the epithelium next to the tongue and ends when a bud linked to the oral surface is formed. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-01T08:07:16Z biological_process owl:Class GO:0102945 biolink:NamedThing soyasapogenol B UDP-glucosyl transferase activity Catalysis of the reaction: UDP-alpha-D-glucose(2-) + soyasapogenol B <=> UDP(3-) + a soyasapogenol B monoglucoside. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9037 molecular_function owl:Class GO:0015439 biolink:NamedThing ABC-type heme transporter activity Catalysis of the reaction: ATP + H2O + heme(in) = ADP + phosphate + heme(out). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled heme transmembrane transporter activity|ATPase-coupled heme transporter activity|heme ABC transporter|ATP-dependent heme transmembrane transporter activity|haem-transporting ATPase activity|heme-transporting ATPase activity|protoheme IX ABC transporter activity RHEA:19261|EC:7.6.2.5|MetaCyc:3.6.3.41-RXN|Reactome:R-HSA-382560|Reactome:R-HSA-1369065|MetaCyc:TRANS-RXN0-162|Reactome:R-HSA-917979|Reactome:R-HSA-5683355 GO:0103115 molecular_function owl:Class GO:0031022 biolink:NamedThing nuclear migration along microfilament The directed movement of the nucleus along microfilaments within the cell, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl nuclear migration, microfilament-mediated biological_process owl:Class GO:0015378 biolink:NamedThing sodium:chloride symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + Cl-(out) = Na+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-426130|Reactome:R-HSA-5623705 molecular_function owl:Class GO:0046985 biolink:NamedThing positive regulation of hemoglobin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. tmpzr1t_l9r_go_relaxed.owl positive regulation of hemoglobin formation|positive regulation of hemoglobin anabolism|up-regulation of hemoglobin biosynthetic process|positive regulation of haemoglobin biosynthetic process|up regulation of hemoglobin biosynthetic process|stimulation of hemoglobin biosynthetic process|upregulation of hemoglobin biosynthetic process|positive regulation of hemoglobin synthesis|positive regulation of hemoglobin biosynthesis|activation of hemoglobin biosynthetic process|positive regulation of haemoglobin biosynthesis biological_process owl:Class GO:0090273 biolink:NamedThing regulation of somatostatin secretion Any process that modulates the rate, frequency, extent of the regulated release of somatostatin from secretory granules in the D cells of the pancreas. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:54:14Z biological_process owl:Class GO:0090276 biolink:NamedThing regulation of peptide hormone secretion Any process that modulates the rate, frequency, or extent of the regulated release of a peptide hormone from secretory granules. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-05T02:56:39Z biological_process owl:Class GO:0048367 biolink:NamedThing shoot system development The process whose specific outcome is the progression of the shoot system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl shoot development GO:0022621 biological_process owl:Class GO:0047855 biolink:NamedThing dihydrobunolol dehydrogenase activity Catalysis of the reaction: dihydrobunolol + NADP(+) = bunolol + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (+-)-5-[(tert-butylamino)-2'-hydroxypropoxy]-1,2,3,4-tetrahydro-1-naphthol:NADP+ oxidoreductase activity|bunolol reductase activity RHEA:15925|MetaCyc:DIHYDROBUNOLOL-DEHYDROGENASE-RXN|KEGG_REACTION:R04623|EC:1.1.1.160 molecular_function owl:Class GO:0033659 biolink:NamedThing modification by symbiont of host mitochondrion The process in which an organism effects a change in the structure or function of host cell mitochondria. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052043 biolink:NamedThing modification by symbiont of host cellular component The process in which an organism effects a change in the structure or function of a host cellular component. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061557 biolink:NamedThing trigeminal ganglion maturation A developmental process, independent of morphogenetic (shape) change, that is required for a trigeminal ganglion to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl trigeminal ganglia maturation dph 2013-07-10T08:58:24Z biological_process owl:Class GO:0047038 biolink:NamedThing D-arabinitol 2-dehydrogenase activity Catalysis of the reaction: D-arabinitol + NAD(+) = D-ribulose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-arabinitol:NAD+ 2-oxidoreductase (D-ribulose-forming)|D-arabinitol 2-dehydrogenase (ribulose-forming) activity MetaCyc:1.1.1.250-RXN|EC:1.1.1.250|KEGG_REACTION:R07134|RHEA:17389 molecular_function owl:Class GO:0010584 biolink:NamedThing pollen exine formation The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004457 biolink:NamedThing lactate dehydrogenase activity Catalysis of the reaction: lactate + NAD+ = H+ + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051981 biolink:NamedThing copper chelate transmembrane transporter activity Enables the transfer of a copper chelate from one side of a membrane to the other. A copper chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030331 biolink:NamedThing estrogen receptor binding Binding to an estrogen receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905051 biolink:NamedThing regulation of base-excision repair Any process that modulates the frequency, rate or extent of base-excision repair. tmpzr1t_l9r_go_relaxed.owl regulation of BER ah 2016-03-16T10:52:00Z biological_process owl:Class GO:0032552 biolink:NamedThing deoxyribonucleotide binding Binding to a deoxyribonucleotide, any compound consisting of a deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043932 biolink:NamedThing ossification involved in bone remodeling The formation or growth of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone, involved in response to injury or other physical, physiological or environmental stress stimuli. tmpzr1t_l9r_go_relaxed.owl ossification involved in bone remodelling biological_process owl:Class GO:0047712 biolink:NamedThing Cypridina-luciferin 2-monooxygenase activity Catalysis of the reaction: Cypridina luciferin + O2 = oxidized Cypridina luciferin + CO2 + light. tmpzr1t_l9r_go_relaxed.owl Cypridina-luciferin:oxygen 2-oxidoreductase (decarboxylating)|luciferase activity|Cypridina-type luciferase activity|luciferase (Cypridina luciferin)|Cypridina luciferase activity EC:1.13.12.6|RHEA:22760|MetaCyc:CYPRIDINA-LUCIFERIN-2-MONOOXYGENASE-RXN molecular_function owl:Class GO:0045289 biolink:NamedThing luciferin monooxygenase activity Catalysis of the generalized reaction: luciferin + O2 = oxidized luciferin + CO2 + light. There may be additional substrates and reactants involved in the reaction. The reaction results in light emission as luciferin returns to the ground state after enzymatic oxidation. tmpzr1t_l9r_go_relaxed.owl luciferase monooxygenase activity|luciferase activity molecular_function owl:Class GO:0005223 biolink:NamedThing intracellular cGMP-activated cation channel activity Enables the transmembrane transfer of a cation by a channel that opens when intracellular cGMP has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl intracellular cGMP activated cation channel activity molecular_function owl:Class GO:0030789 biolink:NamedThing precorrin-3B C17-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-3B = S-adenosyl-L-homocysteine + precorrin 4. tmpzr1t_l9r_go_relaxed.owl precorrin-3 methyltransferase activity|CobJ|S-adenosyl-L-methionine:precorrin-3B C17-methyltransferase activity|precorrin-3 methylase activity MetaCyc:2.1.1.131-RXN|EC:2.1.1.131|RHEA:12761 molecular_function owl:Class GO:0032193 biolink:NamedThing ubiquinone biosynthetic process via 2-polyprenylphenol The chemical reactions and pathways resulting in the formation of ubiquinone, via the intermediates 2-polyprenylphenol and 2-polyprenyl-6-hydroxyphenol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006744 biolink:NamedThing ubiquinone biosynthetic process The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme. tmpzr1t_l9r_go_relaxed.owl coenzyme Q6 biosynthesis|coenzyme Q8 biosynthesis|ubiquinone synthesis|ubiquinone biosynthesis|coenzyme Q6 biosynthetic process|coenzyme Q8 biosynthetic process|coenzyme Q biosynthetic process|ubiquinone formation|coenzyme Q9 biosynthesis|coenzyme Q9 biosynthetic process|ubiquinone anabolism|coenzyme Q10 biosynthetic process|coenzyme Q biosynthesis|coenzyme Q10 biosynthesis MetaCyc:UBISYN-PWY biological_process owl:Class GO:0046885 biolink:NamedThing regulation of hormone biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones. tmpzr1t_l9r_go_relaxed.owl regulation of hormone anabolism|regulation of hormone biosynthesis|regulation of hormone formation|regulation of hormone synthesis biological_process owl:Class GO:0045050 biolink:NamedThing protein insertion into ER membrane by stop-transfer membrane-anchor sequence A process of protein insertion into the endoplasmic reticulum (ER) membrane in which stop-transfer membrane-anchor sequences become an ER membrane spanning helix. tmpzr1t_l9r_go_relaxed.owl protein insertion into ER membrane, stop-transfer membrane-anchor sequence mediated|protein insertion into endoplasmic reticulum membrane by stop-transfer membrane-anchor sequence|protein-ER insertion by stop-transfer membrane-anchor sequence|stop-transfer membrane-anchor sequence mediated protein insertion into ER membrane|protein-endoplasmic reticulum insertion by stop-transfer membrane-anchor sequence biological_process owl:Class GO:0044869 biolink:NamedThing negative regulation by host of viral exo-alpha-sialidase activity The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T14:13:51Z biological_process owl:Class GO:0044866 biolink:NamedThing modulation by host of viral exo-alpha-sialidase activity The process in which a host organism effects a change in viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T11:28:18Z biological_process owl:Class GO:0043798 biolink:NamedThing glycerate 2-kinase activity Catalysis of the reaction: D-glycerate + ATP = 2-phospho-D-glycerate + ADP. tmpzr1t_l9r_go_relaxed.owl glycerate kinase|D-glycerate 2-kinase activity RHEA:27377|EC:2.7.1.165|MetaCyc:GKI-RXN molecular_function owl:Class GO:0016662 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl EC:1.7.2.- molecular_function owl:Class GO:2000748 biolink:NamedThing positive regulation of defecation rhythm Any process that activates or increases the frequency, rate or extent of defecation rhythm. tmpzr1t_l9r_go_relaxed.owl positive regulation of defecation cycle|positive regulation of defecation motor program|positive regulation of DMP|positive regulation of defecation behavior bf 2011-06-15T03:23:13Z biological_process owl:Class GO:2000746 biolink:NamedThing regulation of defecation rhythm Any process that modulates the frequency, rate or extent of defecation rhythm. tmpzr1t_l9r_go_relaxed.owl regulation of defecation motor program|regulation of defecation behavior|regulation of DMP|regulation of defecation cycle bf 2011-06-15T03:23:07Z biological_process owl:Class GO:0021509 biolink:NamedThing roof plate formation The formation of a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060160 biolink:NamedThing negative regulation of dopamine receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of dopamine receptor protein signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl negative regulation of dopamine receptor signalling pathway biological_process owl:Class GO:0060159 biolink:NamedThing regulation of dopamine receptor signaling pathway Any process that modulates the frequency, rate or extent of a dopamine receptor signaling pathway activity. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl regulation of dopamine receptor signalling pathway biological_process owl:Class GO:0034361 biolink:NamedThing very-low-density lipoprotein particle A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver. tmpzr1t_l9r_go_relaxed.owl VLDL complex|very-low-density lipoprotein complex|VLDL particle cellular_component owl:Class GO:0034385 biolink:NamedThing triglyceride-rich plasma lipoprotein particle A plasma lipoprotein particle that has a hydrophobic core enriched in triglycerides surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins. Triglyceride-rich lipoprotein particles transport lipids, which are non-covalently associated with the particles, in the blood. tmpzr1t_l9r_go_relaxed.owl triacylglycerol-rich lipoprotein particle|triglyceride-rich lipoprotein particle cellular_component owl:Class GO:0009082 biolink:NamedThing branched-chain amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. tmpzr1t_l9r_go_relaxed.owl branched chain family amino acid formation|branched chain family amino acid anabolism|branched chain family amino acid biosynthetic process|branched chain family amino acid synthesis|branched chain family amino acid biosynthesis biological_process owl:Class GO:0006565 biolink:NamedThing L-serine catabolic process The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-serine degradation|L-serine breakdown|L-serine catabolism MetaCyc:SERDEG-PWY biological_process owl:Class GO:0006563 biolink:NamedThing L-serine metabolic process The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-serine metabolism biological_process owl:Class GO:0044764 biolink:NamedThing multi-organism cellular process Any process that is carried out at the cellular level which involves another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl jl 2012-12-11T17:00:50Z biological_process owl:Class GO:0000469 biolink:NamedThing cleavage involved in rRNA processing Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. tmpzr1t_l9r_go_relaxed.owl cleavage during rRNA processing biological_process owl:Class GO:0043886 biolink:NamedThing structural constituent of carboxysome The action of a molecule that contributes to the structural integrity of a carboxysome, an organelle found in all cyanobacteria and some chemoautotrophs, consisting of a proteinaceous coat and enzymes for the fixation of CO(2). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19743 molecular_function owl:Class GO:1904120 biolink:NamedThing positive regulation of otic vesicle morphogenesis Any process that activates or increases the frequency, rate or extent of otic vesicle morphogenesis. tmpzr1t_l9r_go_relaxed.owl up regulation of otic vesicle morphogenesis|activation of otic vesicle morphogenesis|up-regulation of otic vesicle morphogenesis|upregulation of otic vesicle morphogenesis pga 2015-04-07T14:01:08Z biological_process owl:Class GO:1903295 biolink:NamedThing negative regulation of glutamate secretion, neurotransmission Any process that stops, prevents or reduces the frequency, rate or extent of glutamate secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl down regulation of glutamate secretion, neurotransmission|inhibition of glutamate secretion, neurotransmission|downregulation of glutamate secretion, neurotransmission|down-regulation of glutamate secretion, neurotransmission An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 inferred from mutant phenotype pad 2014-08-13T13:54:23Z biological_process owl:Class GO:0010739 biolink:NamedThing positive regulation of protein kinase A signaling Any process that increases the rate, frequency, or extent of protein kinase A signaling. PKA signaling is the series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein kinase A signalling cascade|positive regulation of protein kinase A signaling cascade|positive regulation of PKA signaling cascade biological_process owl:Class GO:0045590 biolink:NamedThing negative regulation of regulatory T cell differentiation Any process that stops, prevents, or reduces the rate of differentiation of regulatory T cells. tmpzr1t_l9r_go_relaxed.owl down-regulation of regulatory T cell differentiation|negative regulation of regulatory T lymphocyte differentiation|negative regulation of regulatory T-lymphocyte differentiation|down regulation of regulatory T cell differentiation|downregulation of regulatory T cell differentiation|negative regulation of regulatory T cell development|negative regulation of regulatory T-cell differentiation|negative regulation of suppressor T cell differentiation|inhibition of regulatory T cell differentiation|negative regulation of suppressor T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050841 biolink:NamedThing peptidyl-N6,N6,N6-trimethyl-lysine hydroxylation to peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine The hydroxylation of peptidyl-N6,N6,N6-trimethyl-L-lysine to form peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl peptidyl-trimethyl-lysine hydroxylase activity|peptidyl trimethyl lysine hydroxylase activity RESID:AA0359 biological_process owl:Class GO:0006754 biolink:NamedThing ATP biosynthetic process The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. tmpzr1t_l9r_go_relaxed.owl ATP biosynthesis|ATP synthesis|ATP anabolism|ATP formation|ATP regeneration GO:0006758|GO:0006759 biological_process owl:Class GO:0097645 biolink:NamedThing amylin binding Binding to amylin. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-08T20:53:03Z molecular_function owl:Class GO:0097644 biolink:NamedThing calcitonin family binding Binding to a member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)). tmpzr1t_l9r_go_relaxed.owl pr 2014-09-08T20:50:52Z molecular_function owl:Class GO:0010608 biolink:NamedThing posttranscriptional regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010351 biolink:NamedThing lithium ion transport The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl lithium transport biological_process owl:Class GO:1990034 biolink:NamedThing calcium ion export across plasma membrane The directed movement of calcium ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl calcium ion export from cell|calcium ion efflux from cell mah 2013-02-07T13:01:29Z biological_process owl:Class GO:0000837 biolink:NamedThing Doa10p ubiquitin ligase complex A multiprotein complex that recognizes and ubiquitinates membrane proteins with misfolded cytosolic domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Ssm4p/Doa10p. tmpzr1t_l9r_go_relaxed.owl Ssm4p ubiquitin ligase complex cellular_component owl:Class GO:0000835 biolink:NamedThing ER ubiquitin ligase complex A ubiquitin ligase complex found in the ER. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001799 biolink:NamedThing regulation of type IIb hypersensitivity Any process that modulates the frequency, rate, or extent of type IIb hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904004 biolink:NamedThing positive regulation of sebum secreting cell proliferation Any process that activates or increases the frequency, rate or extent of sebum secreting cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of sebum secreting cell proliferation|upregulation of sebocyte proliferation|activation of sebum secreting cell proliferation|activation of sebocyte proliferation|up-regulation of sebum secreting cell proliferation|up-regulation of sebocyte proliferation|upregulation of sebum secreting cell proliferation|positive regulation of sebocyte proliferation|up regulation of sebocyte proliferation hjd 2015-03-06T16:19:56Z biological_process owl:Class GO:0080082 biolink:NamedThing esculin beta-glucosidase activity Catalysis of the hydrolysis of glucosidic link in esculin. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T04:09:42Z molecular_function owl:Class GO:0060313 biolink:NamedThing negative regulation of blood vessel remodeling Any process that decreases the rate, frequency or extent of blood vessel remodeling, the reorganization or renovation of existing blood vessels. tmpzr1t_l9r_go_relaxed.owl inhibition of blood vessel remodeling|down-regulation of blood vessel remodeling biological_process owl:Class GO:0071393 biolink:NamedThing cellular response to progesterone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T04:11:13Z biological_process owl:Class GO:0001525 biolink:NamedThing angiogenesis Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels. tmpzr1t_l9r_go_relaxed.owl blood vessel formation from pre-existing blood vessels Wikipedia:Angiogenesis biological_process owl:Class GO:0046567 biolink:NamedThing aphidicolan-16 beta-ol synthase activity Catalysis of the reaction: 9-alpha-copalyl diphosphate + H2O = aphidicolan-16-beta-ol + diphosphate. tmpzr1t_l9r_go_relaxed.owl 9-alpha-copalyl-diphosphate diphosphate-lyase (aphidicolan-16-beta-ol-forming) KEGG_REACTION:R06313|MetaCyc:RXN-10631|EC:4.2.3.42|RHEA:26213 molecular_function owl:Class GO:0060189 biolink:NamedThing positive regulation of protein desumoylation Any process that increases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060188 biolink:NamedThing regulation of protein desumoylation Any process that modulates the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045863 biolink:NamedThing negative regulation of pteridine metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving pteridine. tmpzr1t_l9r_go_relaxed.owl down-regulation of pteridine metabolic process|inhibition of pteridine metabolic process|negative regulation of pteridine metabolism|downregulation of pteridine metabolic process|down regulation of pteridine metabolic process biological_process owl:Class GO:0017020 biolink:NamedThing myosin phosphatase regulator activity Binds to and modulates of the activity of myosin phosphatase. tmpzr1t_l9r_go_relaxed.owl myosin phosphatase, intrinsic regulator activity molecular_function owl:Class GO:0047609 biolink:NamedThing acetylputrescine deacetylase activity Catalysis of the reaction: N-acetylputrescine + H(2)O = acetate + putrescine. tmpzr1t_l9r_go_relaxed.owl N-acetylputrescine acetylhydrolase activity EC:3.5.1.62|MetaCyc:ACETYLPUTRESCINE-DEACETYLASE-RXN|RHEA:23412|KEGG_REACTION:R01156 molecular_function owl:Class GO:0003302 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in heart jogging A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the process of heart jogging. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in heart jogging dph 2009-10-22T10:51:58Z biological_process owl:Class GO:1905313 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in heart development Any transforming growth factor beta receptor signaling pathway that is involved in heart development. tmpzr1t_l9r_go_relaxed.owl TGF-beta receptor signaling pathway involved in cardiac development|TGF-beta receptor signalling pathway involved in cardiac development|transforming growth factor beta receptor signaling pathway involved in dorsal vessel development|TGF-beta receptor signalling pathway involved in dorsal vessel development|TGFbeta receptor signaling pathway involved in dorsal vessel development|TGFbeta receptor signaling pathway involved in cardiac development|TGF-beta receptor signaling pathway involved in dorsal vessel development|transforming growth factor beta receptor signalling pathway involved in dorsal vessel development|TGFbeta receptor signalling pathway involved in dorsal vessel development|TGFbeta receptor signaling pathway involved in heart development|TGF-beta receptor signaling pathway involved in heart development|TGFbeta receptor signalling pathway involved in heart development|TGFbeta receptor signalling pathway involved in cardiac development|transforming growth factor beta receptor signalling pathway involved in cardiac development|TGF-beta receptor signalling pathway involved in heart development|transforming growth factor beta receptor signalling pathway involved in heart development|transforming growth factor beta receptor signaling pathway involved in cardiac development rl 2016-07-11T17:45:38Z biological_process owl:Class GO:0035523 biolink:NamedThing protein K29-linked deubiquitination A protein deubiquitination process in which a K29-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 29 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl protein K29-linked deubiquitinylation|protein K29-linked deubiquitylation bf 2010-05-04T04:33:27Z biological_process owl:Class GO:1903808 biolink:NamedThing L-tyrosine import across plasma membrane The directed movement of L-tyrosine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-tyrosine uptake|L-tyrosine import into cell|L-tyrosine import bf 2012-05-11T10:46:21Z GO:0036232 biological_process owl:Class GO:0016476 biolink:NamedThing regulation of embryonic cell shape Any process that modulates the surface configuration of an embryonic cell. tmpzr1t_l9r_go_relaxed.owl shape changes of embryonic cells biological_process owl:Class GO:0061097 biolink:NamedThing regulation of protein tyrosine kinase activity Any process that modulates the rate, frequency, or extent of protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:34:53Z biological_process owl:Class GO:0070741 biolink:NamedThing response to interleukin-6 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-6 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-6 mah 2009-06-19T03:39:12Z biological_process owl:Class GO:1904960 biolink:NamedThing positive regulation of cytochrome-c oxidase activity Any process that activates or increases the frequency, rate or extent of cytochrome-c oxidase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of ba3-type cytochrome c oxidase|positive regulation of cbb3-type cytochrome c oxidase|up regulation of cytochrome aa3 activity|upregulation of cytochrome aa3 activity|activation of warburg's respiratory enzyme activity|up-regulation of warburg's respiratory enzyme activity|activation of indophenolase|up regulation of indophenol oxidase|activation of ferrocytochrome-c:oxygen oxidoreductase|upregulation of indophenol oxidase|upregulation of cytochrome c oxidase activity|activation of caa3-type cytochrome c oxidase|positive regulation of cytochrome a3 activity|positive regulation of cytochrome aa3 activity|up-regulation of caa3-type cytochrome c oxidase|positive regulation of NADH cytochrome c oxidase|up regulation of ferrocytochrome-c:oxygen oxidoreductase|upregulation of ba3-type cytochrome c oxidase|up-regulation of cytochrome aa3 activity|up regulation of cytochrome-c oxidase activity|up regulation of aa3-type cytochrome c oxidase|upregulation of aa3-type cytochrome c oxidase|up regulation of NADH cytochrome c oxidase|up-regulation of NADH cytochrome c oxidase|positive regulation of indophenol oxidase|upregulation of indophenolase|upregulation of complex IV (mitochondrial electron transport) activity|positive regulation of aa3-type cytochrome c oxidase|activation of indophenol oxidase|up-regulation of cytochrome c oxidase activity|upregulation of cytochrome-c oxidase activity|activation of cytochrome a3 activity|up-regulation of cbb3-type cytochrome c oxidase|up-regulation of ferrocytochrome-c:oxygen oxidoreductase|positive regulation of ferrocytochrome-c:oxygen oxidoreductase|up-regulation of indophenol oxidase|upregulation of ferrocytochrome-c:oxygen oxidoreductase|up regulation of cbb3-type cytochrome c oxidase|up regulation of indophenolase|positive regulation of cytochrome oxidase activity|positive regulation of warburg's respiratory enzyme activity|activation of cbb3-type cytochrome c oxidase|upregulation of cbb3-type cytochrome c oxidase|up-regulation of ferrocytochrome c oxidase|up regulation of caa3-type cytochrome c oxidase|up regulation of complex IV (mitochondrial electron transport) activity|activation of cytochrome-c oxidase activity|up-regulation of aa3-type cytochrome c oxidase|activation of cytochrome oxidase activity|upregulation of warburg's respiratory enzyme activity|positive regulation of indophenolase|upregulation of ferrocytochrome c oxidase|up regulation of cytochrome c oxidase activity|up-regulation of cytochrome oxidase activity|activation of complex IV (mitochondrial electron transport) activity|up-regulation of cytochrome-c oxidase activity|activation of NADH cytochrome c oxidase|positive regulation of caa3-type cytochrome c oxidase|up-regulation of cytochrome a3 activity|up-regulation of complex IV (mitochondrial electron transport) activity|upregulation of caa3-type cytochrome c oxidase|positive regulation of cytochrome c oxidase activity|upregulation of cytochrome oxidase activity|up regulation of warburg's respiratory enzyme activity|up-regulation of ba3-type cytochrome c oxidase|positive regulation of ferrocytochrome c oxidase|up regulation of ferrocytochrome c oxidase|upregulation of cytochrome a3 activity|positive regulation of ba3-type cytochrome c oxidase|activation of ferrocytochrome c oxidase|up regulation of cytochrome oxidase activity|up-regulation of indophenolase|activation of cytochrome c oxidase activity|activation of ba3-type cytochrome c oxidase|upregulation of NADH cytochrome c oxidase|positive regulation of complex IV (mitochondrial electron transport) activity|up regulation of cytochrome a3 activity|activation of aa3-type cytochrome c oxidase|activation of cytochrome aa3 activity tb 2016-02-09T22:18:43Z biological_process owl:Class GO:2000323 biolink:NamedThing negative regulation of glucocorticoid receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucocorticoid receptor signalling pathway vk 2011-01-18T04:38:43Z biological_process owl:Class GO:1900522 biolink:NamedThing negative regulation of response to amylopectin Any process that stops, prevents or reduces the frequency, rate or extent of response to amylopectin. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to amylopectin|downregulation of response to amylopectin|inhibition of response to amylopectin|down regulation of response to amylopectin tt 2012-05-02T04:14:01Z biological_process owl:Class GO:1900539 biolink:NamedThing fumonisin metabolic process The chemical reactions and pathways involving fumonisin. tmpzr1t_l9r_go_relaxed.owl fumonisin metabolism tb 2012-05-11T12:53:29Z biological_process owl:Class GO:0050317 biolink:NamedThing tagatose kinase activity Catalysis of the reaction: D-tagatose + ATP = D-tagatose 6-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:D-tagatose 6-phosphotransferase activity|tagatose 6-phosphate kinase (phosphorylating)|D-tagatose 6-phosphate kinase activity RHEA:15513|KEGG_REACTION:R02927|EC:2.7.1.101|MetaCyc:TAGATOSE-KINASE-RXN molecular_function owl:Class GO:0048936 biolink:NamedThing peripheral nervous system neuron axonogenesis Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090424 biolink:NamedThing phytochelatin-metal-sulfur complex formation A phytochelatin metabolic process in which a metal and exogenous sulfur are incorporated with phytochelatin to form a complex. tmpzr1t_l9r_go_relaxed.owl high molecular weight phytochelatin complex formation|HWM phytochelatin complex formation tb 2012-04-20T03:46:45Z biological_process owl:Class GO:0120328 biolink:NamedThing ATP-dependent DNA (cytosine-5-)-methyltransferase activity Catalytic activity that acts to transfer a methyl group to a DNA molecule, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21872 krc 2021-08-16T21:00:16Z molecular_function owl:Class GO:0072712 biolink:NamedThing response to thiabendazole Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thiabendazole stimulus. tmpzr1t_l9r_go_relaxed.owl response to TBZ mah 2012-04-11T04:23:56Z biological_process owl:Class GO:0009772 biolink:NamedThing photosynthetic electron transport in photosystem II A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009767 biolink:NamedThing photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient. tmpzr1t_l9r_go_relaxed.owl photosynthetic electron transport in plastocyanin|electron carrier, chlorophyll electron transport system|photosynthetic electron transport in cytochrome b6/f|photosynthetic electron transport in plastoquinone GO:0009775|GO:0009774|GO:0009776 biological_process owl:Class GO:1902003 biolink:NamedThing regulation of amyloid-beta formation Any process that modulates the frequency, rate or extent of amyloid-beta formation. tmpzr1t_l9r_go_relaxed.owl regulation of beta-amyloid formation dph 2013-03-21T19:59:26Z biological_process owl:Class GO:0070319 biolink:NamedThing Golgi to plasma membrane transport vesicle A transport vesicle that mediates transport from the Golgi to the plasma membrane, and fuses with the plasma membrane to release various cargo molecules, such as proteins or hormones, by exocytosis. tmpzr1t_l9r_go_relaxed.owl Golgi-plasma membrane transport vesicle|Golgi to plasma membrane constitutive secretory pathway transport vesicle cellular_component owl:Class GO:0034103 biolink:NamedThing regulation of tissue remodeling Any process that modulates the frequency, rate, or extent of tissue remodeling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003164 biolink:NamedThing His-Purkinje system development The process whose specific outcome is the progression of the His-Purkinje system over time, from its formation to the mature structure. The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-01T02:07:12Z biological_process owl:Class GO:0003229 biolink:NamedThing ventricular cardiac muscle tissue development The process whose specific outcome is the progression of ventricular cardiac muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl ventricular myocardium development dph 2009-10-13T10:56:01Z biological_process owl:Class GO:0016494 biolink:NamedThing C-X-C chemokine receptor activity Combining with a C-X-C chemokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A C-X-C chemokine has a single amino acid between the first two cysteines of the characteristic four cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035481 biolink:NamedThing positive regulation of Notch signaling pathway involved in heart induction Any process that activates or increases the frequency, rate or extent of the series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl positive regulation of Notch signalling pathway involved in heart induction bf 2010-04-23T10:41:04Z biological_process owl:Class GO:1905241 biolink:NamedThing positive regulation of canonical Wnt signaling pathway involved in osteoblast differentiation Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl activation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|up regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|up regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|upregulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|activation of canonical Wnt signaling pathway involved in osteoblast differentiation|up-regulation of canonical Wnt signaling pathway involved in osteoblast differentiation|activation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|up regulation of canonical Wnt signaling pathway involved in osteoblast differentiation|activation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|positive regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|up-regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|upregulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|up regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|upregulation of canonical Wnt signaling pathway involved in osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|up-regulation of canonical Wnt receptor signalling pathway involved in osteoblast differentiation|positive regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation|upregulation of canonical Wnt receptor signaling pathway involved in osteoblast differentiation|up-regulation of canonical Wnt-activated signaling pathway involved in osteoblast differentiation rph 2016-06-08T10:26:49Z biological_process owl:Class GO:0044863 biolink:NamedThing modulation by virus of host cell division Any process where an infecting virus modulates the frequency, rate or extent of the physical partitioning and separation of its host's cell into daughter cells. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host cell division jl 2014-08-05T16:30:03Z biological_process owl:Class GO:0010292 biolink:NamedThing GTP:GDP antiporter activity Catalysis of the reaction: GTP(out) + GDP(in) = GTP(in) + GDP(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048472 biolink:NamedThing threonine-phosphate decarboxylase activity Catalysis of the reaction: O-phospho-L-threonine + H(+) = (R)-1-aminopropan-2-yl phosphate + CO(2). tmpzr1t_l9r_go_relaxed.owl L-threonine-O-3-phosphate decarboxylase activity|L-threonine O-3-phosphate carboxy-lyase activity|CobD|L-threonine O-3-phosphate carboxy-lyase [(R)-1-aminopropan-2-yl-phosphate-forming] KEGG_REACTION:R06530|EC:4.1.1.81|MetaCyc:4.1.1.81-RXN|RHEA:11492 molecular_function owl:Class GO:0070044 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-1a complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 1a (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Snap25-Stx1a-Vamp2 complex|SNARE complex (Stx1a, SNAP25, VAMP)|SNARE complex (Snap25, Stx1a, Vamp2)|Stx1a-SNAP25-VAMP complex cellular_component owl:Class GO:0004177 biolink:NamedThing aminopeptidase activity Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 Reactome:R-HSA-983162|MetaCyc:RXN0-5052|Reactome:R-HSA-1236954|Reactome:R-HSA-8851929|EC:3.4.11.-|Reactome:R-HSA-2534096 molecular_function owl:Class GO:0062196 biolink:NamedThing regulation of lysosome size Any process that modulates the size of a lysosome. tmpzr1t_l9r_go_relaxed.owl dph 2019-12-09T21:06:44Z biological_process owl:Class GO:0110119 biolink:NamedThing positive regulation of very-low-density lipoprotein particle clearance Any process that increases the frequency, rate or extent of very-low-density lipoprotein particle clearance. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-27T14:13:47Z biological_process owl:Class GO:0061200 biolink:NamedThing clathrin-sculpted gamma-aminobutyric acid transport vesicle A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing gamma-aminobutyric acid transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted GABA transport vesicle|clathrin sculpted gamma-aminobutyric acid transport vesicle dph 2010-07-29T10:40:43Z cellular_component owl:Class GO:0060198 biolink:NamedThing clathrin-sculpted vesicle A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted vesicle cellular_component owl:Class GO:0030279 biolink:NamedThing negative regulation of ossification Any process that stops, prevents, or reduces the frequency, rate or extent of ossification, the formation of bone or of a bony substance or the conversion of fibrous tissue or of cartilage into bone or a bony substance. tmpzr1t_l9r_go_relaxed.owl down-regulation of ossification|inhibition of ossification|downregulation of ossification|negative regulation of bone formation|down regulation of ossification|negative regulation of bone biosynthesis biological_process owl:Class GO:0030149 biolink:NamedThing sphingolipid catabolic process The chemical reactions and pathways resulting in the breakdown of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl sphingolipid breakdown|sphingolipid catabolism|sphingolipid degradation biological_process owl:Class GO:0048443 biolink:NamedThing stamen development The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl GO:0048425 biological_process owl:Class GO:0048437 biolink:NamedThing floral organ development The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl GO:0048433 biological_process owl:Class GO:0002369 biolink:NamedThing T cell cytokine production Any process that contributes to cytokine production by a T cell. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte cytokine production|T-cell cytokine production|T lymphocyte cytokine production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0008049 biolink:NamedThing male courtship behavior The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behaviour GO:0016542 biological_process owl:Class GO:0015055 biolink:NamedThing secretin receptor activity Combining with secretin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002646 biolink:NamedThing regulation of central tolerance induction Any process that modulates the frequency, rate, or extent of central tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062009 biolink:NamedThing secondary palate development The biological process whose specific outcome is the progression of the secondary palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The secondary palate is the part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-26T22:55:20Z biological_process owl:Class GO:0060021 biolink:NamedThing roof of mouth development The biological process whose specific outcome is the progression of the roof of the mouth from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The roof of the mouth is the partition that separates the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl palatum development biological_process owl:Class GO:0090442 biolink:NamedThing trehalose catabolism in response to heat stress The chemical reactions and pathways resulting in the degradation of trehalose that occur as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl trehalose catabolic process in response to heat stress tb 2012-08-23T13:53:07Z biological_process owl:Class GO:0008334 biolink:NamedThing histone mRNA metabolic process The chemical reactions and pathways involving an mRNA encoding a histone. tmpzr1t_l9r_go_relaxed.owl stem-loop-containing histone mRNA 3'-end processing|histone mRNA metabolism In higher Eukaryotes, histone mRNAs (stem-loop containing) are non-polyadenylated and thus have a different form of 3'-end regulation to other mRNAs. In lower Eukaryotes, the 3'-ends of histone mRNAs are polyadenylated. biological_process owl:Class GO:0010743 biolink:NamedThing regulation of macrophage derived foam cell differentiation Any process that modulates the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050656 biolink:NamedThing 3'-phosphoadenosine 5'-phosphosulfate binding Binding to 3'-phosphoadenosine 5'-phosphosulfate (PAPS), a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems. tmpzr1t_l9r_go_relaxed.owl PAPS binding|3'-phosphoadenosine 5'-phosphosulphate binding|adenosine 3'-phosphate 5'-phosphosulfate binding|phosphoadenosine phosphosulfate binding|3'-phosphoadenylyl-sulfate binding molecular_function owl:Class GO:0031278 biolink:NamedThing alpha-1,2-galactosyltransferase activity Catalysis of the transfer of a galactose residue from a donor molecule, such as GDP-galactose or UDP-galactose, to an oligosaccharide, forming an alpha-1,2-linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061834 biolink:NamedThing actin filament branch point The part of an actin filament where the structure forks. tmpzr1t_l9r_go_relaxed.owl microfilament branch point cellular_component owl:Class GO:0000495 biolink:NamedThing box H/ACA RNA 3'-end processing Any process involved in forming the mature 3' end of a box H/ACA RNA molecule. tmpzr1t_l9r_go_relaxed.owl box H/ACA RNA 3' end processing|box H/ACA sRNA 3'-end processing|box H/ACA snoRNA 3'-end processing https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0002869 biolink:NamedThing positive regulation of B cell deletion Any process that activates or increases the frequency, rate, or extent of B cell deletion. tmpzr1t_l9r_go_relaxed.owl positive regulation of B lymphocyte deletion|upregulation of B cell deletion|up regulation of B cell deletion|up-regulation of B cell deletion|activation of B cell deletion|stimulation of B cell deletion|positive regulation of B-lymphocyte deletion|positive regulation of B-cell deletion biological_process owl:Class GO:0071202 biolink:NamedThing Kv4.3-DPP10 channel complex A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.3. tmpzr1t_l9r_go_relaxed.owl Kv4.3-DPPY channel complex CORUM:598 mah 2009-11-23T05:21:37Z cellular_component owl:Class GO:0043727 biolink:NamedThing 5-amino-4-imidazole carboxylate lyase activity Catalysis of the reaction: 5-aminoimidazole + CO2 = 5-amino-4-imidazole carboxylate. tmpzr1t_l9r_go_relaxed.owl EC:4.1.1.21 molecular_function owl:Class GO:0007619 biolink:NamedThing courtship behavior The behavior of an organism for the purpose of attracting sexual partners. tmpzr1t_l9r_go_relaxed.owl courtship behaviour biological_process owl:Class GO:0002340 biolink:NamedThing central B cell selection Any B cell selection process that occurs in the bone marrow. tmpzr1t_l9r_go_relaxed.owl central B-cell selection|central B-lymphocyte selection|central B lymphocyte selection biological_process owl:Class GO:0048809 biolink:NamedThing analia morphogenesis The process in which the anatomical structures of analia are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is analia morphogenesis in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905913 biolink:NamedThing negative regulation of calcium ion export across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion export from cell|down regulation of calcium ion efflux from cell|negative regulation of calcium ion efflux from cell|downregulation of calcium ion export from cell|inhibition of calcium ion efflux from cell|inhibition of calcium ion export from cell|down-regulation of calcium ion efflux from cell|down regulation of calcium ion export from cell|downregulation of calcium ion efflux from cell|negative regulation of calcium ion export from cell rph 2017-02-07T13:20:48Z biological_process owl:Class GO:1905912 biolink:NamedThing regulation of calcium ion export across plasma membrane Any process that modulates the frequency, rate or extent of calcium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion export from cell|regulation of calcium ion efflux from cell rph 2017-02-07T13:20:39Z biological_process owl:Class GO:0106025 biolink:NamedThing positive regulation of pupariation Any process that activates or increases the frequency, rate or extent of onset of pupariation. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-24T19:37:50Z biological_process owl:Class GO:0003057 biolink:NamedThing regulation of the force of heart contraction by chemical signal The regulation of the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine. tmpzr1t_l9r_go_relaxed.owl chemical cardiac inotropy|regulation of the force of heart muscle contraction by chemical signal biological_process owl:Class GO:0047173 biolink:NamedThing phosphatidylcholine-retinol O-acyltransferase activity Catalysis of the reaction: retinol-[cellular-retinol-binding-protein] + phosphatidylcholine = retinyl-ester-[cellular-retinol-binding-protein] + 2-acylglycerophosphocholine. tmpzr1t_l9r_go_relaxed.owl lecithin--retinol acyltransferase activity|phosphatidylcholine:retinol-[cellular-retinol-binding-protein] O-acyltransferase activity|phosphatidylcholine:retinol-(cellular-retinol-binding-protein) O-acyltransferase activity MetaCyc:2.3.1.135-RXN|Reactome:R-HSA-975608|RHEA:17469|EC:2.3.1.135 molecular_function owl:Class GO:1903861 biolink:NamedThing positive regulation of dendrite extension Any process that activates or increases the frequency, rate or extent of dendrite extension. tmpzr1t_l9r_go_relaxed.owl activation of dendrite extension|up regulation of dendrite extension|upregulation of dendrite extension|up-regulation of dendrite extension An example of this is Mul1 in mouse (UniProt ID Q8VCM5) in PMID:24898855 inferred from mutant phenotype. pad 2015-02-02T15:34:09Z biological_process owl:Class GO:0061198 biolink:NamedThing fungiform papilla formation The developmental process pertaining to the initial formation of a spongiform papilla from unspecified parts. The fungiform papilla is a mushroom-shaped papilla of the tongue. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T12:29:03Z biological_process owl:Class GO:1990773 biolink:NamedThing matrix metallopeptidase secretion The regulated release of matrix metallopeptidases, a family of zinc-dependent endopeptidases that can degrade extracellular matrix proteins and process other types of proteins. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase secretion|MMP secretion sl 2015-06-15T19:12:06Z biological_process owl:Class GO:0003238 biolink:NamedThing conus arteriosus development The progression of the conus arteriosus over time, from its formation to the mature structure. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:20:57Z biological_process owl:Class GO:0018722 biolink:NamedThing 1-phenanthrol sulfotransferase activity Catalysis of the reaction: 1-phenanthrol + X-SO3(-) = HX + 1-phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl 1-phenanthrol sulphotransferase activity UM-BBD_reactionID:r0565 molecular_function owl:Class GO:1904626 biolink:NamedThing positive regulation of glycine secretion, neurotransmission Any process that activates or increases the frequency, rate or extent of glycine secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl up-regulation of glycine secretion, neurotransmission|activation of glycine secretion, neurotransmission|up regulation of glycine secretion, neurotransmission|upregulation of glycine secretion, neurotransmission hjd 2015-08-27T20:03:49Z biological_process owl:Class GO:0002854 biolink:NamedThing positive regulation of T cell mediated cytotoxicity directed against tumor cell target Any process that activates or increases the frequency, rate, or extent of T cell mediated cytotoxicity directed against a tumor cell target. tmpzr1t_l9r_go_relaxed.owl up regulation of T cell mediated cytotoxicity directed against tumor cell target|activation of T cell mediated cytotoxicity directed against tumor cell target|stimulation of T cell mediated cytotoxicity directed against tumor cell target|up-regulation of T cell mediated cytotoxicity directed against tumor cell target|upregulation of T cell mediated cytotoxicity directed against tumor cell target biological_process owl:Class GO:0009706 biolink:NamedThing chloroplast inner membrane The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma. tmpzr1t_l9r_go_relaxed.owl chloroplast inner envelope cellular_component owl:Class GO:1904702 biolink:NamedThing regulation of protein localization to adherens junction Any process that modulates the frequency, rate or extent of protein localization to adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization in cell-cell adherens junction|regulation of protein localisation in cell-cell adherens junction|regulation of protein localisation to cell-cell adherens junction kmv 2015-10-01T15:11:49Z biological_process owl:Class GO:1902196 biolink:NamedThing isovaleryl-CoA(4-) catabolic process The chemical reactions and pathways resulting in the breakdown of isovaleryl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl isovaleryl-CoA(4-) breakdown|isovaleryl-CoA(4-) degradation|isovaleryl-CoA(4-) catabolism ms 2013-06-06T09:56:00Z biological_process owl:Class GO:0001195 biolink:NamedThing maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation from a RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase III promoter krc 2011-09-02T02:41:29Z biological_process owl:Class GO:0001192 biolink:NamedThing maintenance of transcriptional fidelity during DNA-templated transcription elongation Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation on a DNA template. tmpzr1t_l9r_go_relaxed.owl maintenance of transcriptional fidelity during DNA-dependent transcription elongation|maintenance of transcriptional fidelity during DNA-dependent transcription elongation from bacterial-type RNA polymerase promoter|maintenance of transcriptional fidelity during DNA-templated transcription elongation from bacterial-type RNA polymerase promoter krc 2011-09-02T02:25:30Z GO:0001194 biological_process owl:Class GO:0051459 biolink:NamedThing regulation of corticotropin secretion Any process that modulates the frequency, rate or extent of the regulated release of corticotropic hormone from a cell. tmpzr1t_l9r_go_relaxed.owl regulation of corticotropic hormone secretion|regulation of adrenotropin hormone secretion|regulation of ACTH secretion|regulation of adrenocorticotropic hormone secretion|regulation of adrenotropin secretion|regulation of adrenocorticotropin secretion biological_process owl:Class GO:0106254 biolink:NamedThing lipid sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of a lipid. tmpzr1t_l9r_go_relaxed.owl hjd 2020-03-09T17:36:09Z molecular_function owl:Class GO:0032420 biolink:NamedThing stereocilium An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903437 biolink:NamedThing negative regulation of mitotic cytokinetic process Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cytokinetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of mitotic cytokinetic process|downregulation of mitotic cytokinetic process|down-regulation of mitotic cytokinetic process|down regulation of mitotic cytokinetic process tb 2014-09-15T23:11:47Z biological_process owl:Class GO:0052403 biolink:NamedThing negative regulation by host of symbiont catalytic activity Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down-regulation by host of symbiont enzyme activity|downregulation by host of symbiont enzyme activity|inhibition of symbiont enzyme activity|down-regulation by host of symbiont protein function|inhibition by host of symbiont enzyme activity|inhibition of symbiont protein function|inhibition by host of symbiont protein function|down regulation by host of symbiont enzyme activity|negative regulation by host of symbiont molecular function|down regulation by host of symbiont protein function|negative regulation by host of symbiont enzyme activity|downregulation by host of symbiont protein function GO:0052405 biological_process owl:Class GO:0052422 biolink:NamedThing modulation by host of symbiont catalytic activity The process in which a host organism effects a change in the enzyme activity of its symbiont organism. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont molecular function|modulation by host of symbiont enzyme activity GO:0052428 biological_process owl:Class GO:0060895 biolink:NamedThing retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the dorsal ventral patterning of the spinal cord. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in spinal cord dorsal/ventral patterning dph 2009-08-13T01:51:50Z biological_process owl:Class GO:0007427 biolink:NamedThing epithelial cell migration, open tracheal system The orderly movement of epithelial cells during development of an open tracheal system. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl tracheal cell migration|tracheal epithelial cell migration biological_process owl:Class GO:0060443 biolink:NamedThing mammary gland morphogenesis The process in which anatomical structures of the mammary gland are generated and organized. Morphogenesis refers to the creation of shape. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061274 biolink:NamedThing mesonephric distal tubule development The process whose specific outcome is the progression of the mesonephric distal tubule over time, from its formation to the mature structure. The mesonephric distal tubule is a mesonephric nephron tubule that begins at the terminal segment of the proximal tubule and ends at the mesonephric connecting tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T12:16:25Z biological_process owl:Class GO:0072017 biolink:NamedThing distal tubule development The process whose specific outcome is the progression of the distal tubule over time, from its formation to the mature structure. In mammals, the distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:34:19Z biological_process owl:Class GO:0006041 biolink:NamedThing glucosamine metabolic process The chemical reactions and pathways involving glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin. tmpzr1t_l9r_go_relaxed.owl chitosamine metabolic process|glucosamine metabolism|chitosamine metabolism biological_process owl:Class GO:0098593 biolink:NamedThing goblet cell theca A cup shaped specialization of the cytoskeleton that forms a thin layer located just below the apical mass of mature mucin secretory granules in the cytoplasm of goblet cells of the intestinal epithelium. It consists of an orderly network of intermediate filaments and microtubules. Microtubules are arranged vertically, like barrel staves, along the inner aspect of the theta. Intermediate filaments form two networks: an inner, basketlike network and an outer series of circumferential bundles resembling the hoops of a barrel. tmpzr1t_l9r_go_relaxed.owl dos 2014-03-11T14:52:33Z cellular_component owl:Class GO:0090721 biolink:NamedThing primary adaptive immune response involving T cells and B cells An adaptive immune response mediated by naive T or B cells against an antigen not previously encountered by immune system. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:46:29Z biological_process owl:Class GO:0090720 biolink:NamedThing primary adaptive immune response An adaptive immune response against an antigen not previously encountered by immune system. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:44:55Z biological_process owl:Class GO:0002319 biolink:NamedThing memory B cell differentiation The process in which a B cell acquires the specialized features of a memory B cell. Memory B cells are cells that can respond rapidly to antigen re-exposure by production of high-affinity antibody. tmpzr1t_l9r_go_relaxed.owl memory B cell development|memory B-lymphocyte differentiation|memory B lymphocyte differentiation|memory B-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0061132 biolink:NamedThing pancreas induction The close range interaction of two or more cells or tissues that causes the cells of the gut to change their fates and specify the development of the pancreas. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T09:45:32Z biological_process owl:Class GO:0045786 biolink:NamedThing negative regulation of cell cycle Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of progression through cell cycle|down-regulation of progression through cell cycle|inhibition of progression through cell cycle|down regulation of progression through cell cycle|negative regulation of cell cycle progression|downregulation of progression through cell cycle biological_process owl:Class GO:0047886 biolink:NamedThing farnesol dehydrogenase activity Catalysis of the reaction: 2-trans,6-trans-farnesol + NADP(+) = 2-trans,6-trans-farnesal + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl farnesol (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|2-trans,6-trans-farnesol:NADP+ 1-oxidoreductase activity|NADP-farnesol dehydrogenase activity MetaCyc:FARNESOL-DEHYDROGENASE-RXN|EC:1.1.1.216|RHEA:14697|KEGG_REACTION:R03264 molecular_function owl:Class GO:0050929 biolink:NamedThing induction of negative chemotaxis Any process that initiates the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032329 biolink:NamedThing serine transport The directed movement of L-serine, 2-amino-3-hydroxypropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl serine import tb 2012-10-01T11:10:51Z GO:0090478 biological_process owl:Class GO:0002587 biolink:NamedThing negative regulation of antigen processing and presentation of peptide antigen via MHC class II Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl downregulation of antigen processing and presentation of peptide antigen via MHC class II|down-regulation of antigen processing and presentation of peptide antigen via MHC class II|inhibition of antigen processing and presentation of peptide antigen via MHC class II|negative regulation of peptide antigen processing and presentation via MHC class II|down regulation of antigen processing and presentation of peptide antigen via MHC class II biological_process owl:Class GO:0098753 biolink:NamedThing anchored component of the cytoplasmic side of the plasma membrane The component of the plasma membrane consisting of gene products and protein complexes with covalently attached hydrophobic anchors products that penetrate only the cytoplasmic side of the membrane. tmpzr1t_l9r_go_relaxed.owl Examples include many myristoylated proteins. cellular_component owl:Class GO:0080131 biolink:NamedThing hydroxyjasmonate sulfotransferase activity Catalysis of the reaction: a hydroxyjasmonate + 3'-phosphoadenosine-5'-phosphosulfate = a hydroxyjasmonate sulfate + adenosine-3',5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl 11-hydroxyjasmonic acid sulfotransferase activity|12-hydroxyjasmonic acid sulfotransferase activity|OHJA sulfotransferase activity|hydroxyjasmonic acid sulfotransferase activity|12-hydroxyjasmonate sulfotransferase activity|11-OHJA sulfotransferase activity|12-OHJA sulfotransferase activity|11-hydroxyjasmonate sulfotransferase activity dhl 2009-04-29T03:47:12Z molecular_function owl:Class GO:0010491 biolink:NamedThing UTP:arabinose-1-phosphate uridylyltransferase activity Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051748 biolink:NamedThing UTP-monosaccharide-1-phosphate uridylyltransferase activity Catalysis of the reaction: UTP + a monosaccharide 1-phosphate = diphosphate + UDP-monosaccharide. tmpzr1t_l9r_go_relaxed.owl UDP-sugar pyrophosphorylase activity|UDP-monosaccharide pyrophosphorylase activity|USP|PsUSP|UDP-monosaccharide diphosphorylase activity RHEA:13205|MetaCyc:2.7.7.64-RXN|EC:2.7.7.64 molecular_function owl:Class GO:0140325 biolink:NamedThing negative regulation of protein localization to medial cortex Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to the medial cortex. tmpzr1t_l9r_go_relaxed.owl pg 2019-04-17T11:58:27Z biological_process owl:Class GO:0010370 biolink:NamedThing perinucleolar chromocenter A chromocenter adjacent to the nucleolus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010369 biolink:NamedThing chromocenter A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000374 biolink:NamedThing Group III intron splicing The splicing of Group III introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group III introns, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions begun by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat. Though very similar in structure and mechanism to Group II introns, Group III introns are smaller and more streamlined and the splice site consensus sequences are not as well conserved. tmpzr1t_l9r_go_relaxed.owl mRNA splicing Note that Group III introns are known to be found in mRNA of plastids of euglenoid protists. biological_process owl:Class GO:0097130 biolink:NamedThing cyclin D3-CDK4 complex A protein complex consisting of cyclin D3 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:54:17Z cellular_component owl:Class GO:0070537 biolink:NamedThing histone H2A K63-linked deubiquitination A protein deubiquitination process in which a K63-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is removed from a lysine residue in histone H2A or the variant H2AX. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005838 biolink:NamedThing proteasome regulatory particle A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. tmpzr1t_l9r_go_relaxed.owl PA700 proteasome activator|19S regulatory particle|PA700-dependent proteasome activator|modulator complex cellular_component owl:Class GO:0097571 biolink:NamedThing left nucleus One of the two nuclei found in Giardia species (trophozoite stage). It is located on the left side of the cell when viewed from the dorsal side. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-18T11:21:31Z cellular_component owl:Class GO:0070137 biolink:NamedThing ubiquitin-like protein-specific endopeptidase activity Catalysis of the hydrolysis of peptide bonds between an alpha-carboxyl group and an alpha-amino group within a small protein such as ubiquitin or a ubiquitin-like protein (e.g. APG8, ISG15, NEDD8, SUMO). tmpzr1t_l9r_go_relaxed.owl small conjugating protein-specific endopeptidase activity molecular_function owl:Class GO:0033502 biolink:NamedThing cellular galactose homeostasis A cellular homeostatic process involved in the maintenance of an internal steady state of galactose within a cell or between a cell and its external environment. tmpzr1t_l9r_go_relaxed.owl cell galactose homeostasis biological_process owl:Class GO:0048058 biolink:NamedThing compound eye corneal lens development The process whose specific outcome is the progression of the corneal lens in the compound eye over time, from its formation to the mature structure. The corneal lens is a chitinous extracellular secretion of the four underlying cone cells and the pigment cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052768 biolink:NamedThing mannosyl-oligosaccharide 1,3-alpha-mannosidase activity Catalysis of the hydrolysis of the alpha-(1->3) bonds of alpha-D-mannose residues in mannosyl-oligosaccharide. tmpzr1t_l9r_go_relaxed.owl 1,3-alpha-mannosidase activity|1,3-alpha-mannosyl-oligosaccharide alpha-D-mannohydrolase activity|alpha-1,3-mannosyl-oligosaccharide alpha-D-mannohydrolase activity|alpha-1,3-mannosidase activity EC:3.1.1.- ai 2011-09-30T12:55:24Z molecular_function owl:Class GO:0015924 biolink:NamedThing mannosyl-oligosaccharide mannosidase activity Catalysis of the hydrolysis of the terminal alpha-D-mannose residues in oligo-mannose oligosaccharides. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.- molecular_function owl:Class GO:0098507 biolink:NamedThing polynucleotide 5' dephosphorylation The process of removing one or more phosphate groups from the 5' end of a polynucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000768 biolink:NamedThing positive regulation of nephron tubule epithelial cell differentiation Any process that activates or increases the frequency, rate or extent of nephron tubule epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-22T11:55:06Z biological_process owl:Class GO:0071389 biolink:NamedThing cellular response to mineralocorticoid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:59:02Z biological_process owl:Class GO:0060963 biolink:NamedThing positive regulation of ribosomal protein gene transcription by RNA polymerase II Any process that increases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter dph 2009-10-05T03:04:05Z biological_process owl:Class GO:0020002 biolink:NamedThing host cell plasma membrane The plasma membrane surrounding a host cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904564 biolink:NamedThing Nbp35-Cfd1 ATPase complex An iron-sulfur cluster assembly complex that is capable of weak ATPase activity. In yeast it consists of two subunits, Nbp35 and Cfd1. tmpzr1t_l9r_go_relaxed.owl rb 2015-08-18T22:50:29Z cellular_component owl:Class GO:1904831 biolink:NamedThing positive regulation of aortic smooth muscle cell differentiation Any process that activates or increases the frequency, rate or extent of aortic smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of aortic smooth muscle cell differentiation|activation of aortic smooth muscle cell differentiation|upregulation of aortic smooth muscle cell differentiation|up regulation of aortic smooth muscle cell differentiation rph 2015-11-24T10:20:54Z biological_process owl:Class GO:1990052 biolink:NamedThing ER to chloroplast lipid transport The directed movement of a lipid from the endoplasmic reticulum (ER) to the chloroplast. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum to chloroplast lipid transport|ER to chloroplast lipid trafficking tb 2013-02-22T00:05:23Z biological_process owl:Class GO:0061925 biolink:NamedThing negative regulation of formation of radial glial scaffolds Any process that reduces the frequency, rate or extent of the formation of radial glial scaffolds. The scaffolds are used as a substrate for the radial migration of cells. tmpzr1t_l9r_go_relaxed.owl negative regulation of Bergmann fiber formation|negative regulation of Bergmann fiber biosynthesis|negative regulation of radial glial scaffold formation dph 2017-08-02T16:24:27Z biological_process owl:Class GO:0060865 biolink:NamedThing negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signaling pathway The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand and contributing to the decrease in the rate or frequency of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signalling pathway dph 2009-08-12T04:42:14Z biological_process owl:Class GO:0035665 biolink:NamedThing TIRAP-dependent toll-like receptor 4 signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor 4 where the TIRAP/MAL adaptor mediates transduction of the signal. Toll-like 4 receptors are pattern recognition receptors that bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl MyD88 adapter-like dependent toll-like receptor 4 signaling pathway|MAL-dependent toll-like receptor 4 signaling pathway|TIRAP-dependent toll-like receptor 4 signalling pathway|TIRAP-dependent TLR4 signaling pathway bf 2011-02-01T02:33:48Z biological_process owl:Class GO:0035664 biolink:NamedThing TIRAP-dependent toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the TIRAP/MAL adaptor mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl MAL-dependent toll-like receptor signaling pathway|MyD88 adapter-like dependent toll-like receptor signaling pathway|TIRAP-dependent TLR signaling pathway|TIRAP-dependent toll-like receptor signalling pathway bf 2011-02-01T02:31:37Z biological_process owl:Class GO:0098534 biolink:NamedThing centriole assembly A cellular process that results in the assembly of one or more centrioles. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-22T15:55:22Z biological_process owl:Class GO:0086071 biolink:NamedThing atrial cardiac muscle cell-AV node cell adhesion involved in cell communication The attachment of an atrial cardiomyocyte to an AV node cell via adhesion molecules that results in the cells being juxtaposed so that they can communicate. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte-atrioventricular node cell adhesion involved in cell communication|atrial cardiomyocyte-AV node cell adhesion involved in cell communication dph 2011-11-22T09:46:33Z biological_process owl:Class GO:0034113 biolink:NamedThing heterotypic cell-cell adhesion The attachment of a cell to a cell of a different type via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl Note that this term is not synonymous with 'heterophilic cell adhesion ; GO:0007157'; the process may occur by homophilic or heterophilic mechanisms. biological_process owl:Class GO:0140663 biolink:NamedThing ATP-dependent FeS chaperone activity Binding to and delivering metal ions to a target protein, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21661 pg 2021-06-19T16:33:09Z molecular_function owl:Class GO:0044616 biolink:NamedThing modulation of relaxation of muscle in other organism The process in which an organism effects a change in the relaxation of muscle in a second organism. tmpzr1t_l9r_go_relaxed.owl regulation of relaxation of muscle in other organism jl 2012-07-04T01:54:12Z biological_process owl:Class GO:0046676 biolink:NamedThing negative regulation of insulin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of insulin. tmpzr1t_l9r_go_relaxed.owl downregulation of insulin secretion|down regulation of insulin secretion|down-regulation of insulin secretion|inhibition of insulin secretion biological_process owl:Class GO:0047763 biolink:NamedThing caffeate O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3,4-dihydroxy-trans-cinnamate = S-adenosyl-L-homocysteine + 3-methoxy-4-hydroxy-trans-cinnamate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:3,4-dihydroxy-trans-cinnamate 3-O-methyltransferase activity|caffeate 3-O-methyltransferase activity|S-adenosyl-L-methionine:caffeic acid-O-methyltransferase activity|caffeate methyltransferase activity RHEA:20225|MetaCyc:RXN-1104|EC:2.1.1.68 molecular_function owl:Class GO:0016995 biolink:NamedThing cholesterol oxidase activity Catalysis of the reaction: cholesterol + O2 = cholest-5-en-3-one + H2O2. tmpzr1t_l9r_go_relaxed.owl 3beta-hydroxysteroid:oxygen oxidoreductase activity|cholesterol-O(2) oxidoreductase activity|3beta-hydroxy steroid oxidoreductase activity|cholesterol:oxygen oxidoreductase activity|cholesterol- O2 oxidoreductase activity|cholesterol-O2 oxidoreductase activity EC:1.1.3.6|MetaCyc:CHOLESTEROL-OXIDASE-RXN|KEGG_REACTION:R01459|RHEA:32183 molecular_function owl:Class GO:0048698 biolink:NamedThing negative regulation of collateral sprouting in absence of injury Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting in the absence of injury. tmpzr1t_l9r_go_relaxed.owl down regulation of collateral sprouting in the absence of injury|inhibition of collateral sprouting in the absence of injury|down-regulation of collateral sprouting in the absence of injury|downregulation of collateral sprouting in the absence of injury biological_process owl:Class GO:0048696 biolink:NamedThing regulation of collateral sprouting in absence of injury Any process that modulates the frequency, rate or extent of collateral sprouting in the absence of injury. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021822 biolink:NamedThing negative regulation of cell motility involved in cerebral cortex radial glia guided migration The intracellular signaling pathway that results in the cessation of cell movement involved in lamination of the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl down regulation of cell locomotion involved in cerebral cortex glial-mediated radial cell migration|negative regulation of cell locomotion involved in cerebral cortex radial glia guided migration|inhibition of cell locomotion involved in cerebral cortex glial-mediated radial cell migration|down-regulation of cell locomotion involved in cerebral cortex glial-mediated radial cell migration|downregulation of cell locomotion involved in cerebral cortex glial-mediated radial cell migration|negative regulation of cell locomotion involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0015549 biolink:NamedThing carbonyl cyanide m-chlorophenylhydrazone transmembrane transporter activity Enables the transfer of carbonyl cyanide m-chlorophenylhydrazone from one side of a membrane to the other. Carbonyl cyanide m-chlorophenylhydrazone is a proton ionophore, commonly used as an uncoupling agent and inhibitor of photosynthesis because of its effects on mitochondrial and chloroplast membranes. tmpzr1t_l9r_go_relaxed.owl CCCP transporter activity|carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity|carbonyl cyanide m-chlorophenylhydrazone transporter activity molecular_function owl:Class GO:0033966 biolink:NamedThing N-substituted formamide deformylase activity Catalysis of the reaction: N-benzylformamide + H2O = formate + benzylamine. tmpzr1t_l9r_go_relaxed.owl NfdA|N-benzylformamide amidohydrolase activity RHEA:12096|MetaCyc:3.5.1.91-RXN molecular_function owl:Class GO:0035601 biolink:NamedThing protein deacylation The removal of an acyl group, any group or radical of the form RCO- where R is an organic group, from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid deacylation bf 2010-11-15T11:06:15Z biological_process owl:Class GO:0098732 biolink:NamedThing macromolecule deacylation The removal of an acyl group, any group or radical of the form RCO- where R is an organic group, from a macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905491 biolink:NamedThing positive regulation of sensory neuron axon guidance Any process that activates or increases the frequency, rate or extent of sensory neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl up-regulation of sensory neuron axon guidance|activation of sensory neuron axon guidance|upregulation of sensory neuron axon guidance|up regulation of sensory neuron axon guidance hbye 2016-09-23T13:19:12Z biological_process owl:Class GO:0030555 biolink:NamedThing RNA modification guide activity Specifies the site of a posttranscriptional modification in an RNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:1904860 biolink:NamedThing DNA synthesis involved in mitotic DNA replication Any DNA biosynthetic process that is involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA anabolism involved in DNA replication during S phase involved in mitotic cell cycle|DNA synthesis involved in mitotic cell cycle DNA replication|DNA biosynthetic process involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA synthesis involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA synthesis involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA biosynthetic process involved in DNA replication during S phase involved in mitotic cell cycle|DNA biosynthetic process involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA biosynthesis involved in mitotic DNA replication|DNA anabolism involved in mitotic DNA replication|DNA anabolism involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA biosynthesis involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA synthesis involved in mitotic nuclear cell cycle DNA replication|DNA biosynthesis involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA formation involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA formation involved in mitotic DNA replication|DNA formation involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA biosynthesis involved in mitotic nuclear cell cycle DNA replication|DNA biosynthesis involved in DNA replication during S phase involved in mitotic cell cycle|DNA synthesis involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA anabolism involved in mitotic cell cycle DNA replication|DNA biosynthetic process involved in mitotic nuclear cell cycle DNA replication|DNA anabolism involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA biosynthesis involved in mitotic cell cycle DNA replication|DNA formation involved in DNA replication during S phase involved in mitotic cell cycle|DNA synthesis involved in DNA replication during S phase involved in mitotic cell cycle|DNA biosynthetic process involved in mitotic cell cycle DNA replication|DNA formation involved in mitotic cell cycle DNA replication|DNA biosynthetic process involved in mitotic DNA replication|DNA biosynthetic process involved in DNA replication involved in S-phase involved in mitotic cell cycle|DNA formation involved in mitotic nuclear cell cycle DNA replication|DNA formation involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|DNA biosynthesis involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA anabolism involved in DNA replication involved in S phase involved in mitotic cell cycle|DNA anabolism involved in mitotic nuclear cell cycle DNA replication mah 2015-12-16T12:02:37Z biological_process owl:Class GO:0036173 biolink:NamedThing thiosulfate binding Binding to a thiosulfate, a sulfur oxide that has formula O3S2. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-29T10:38:15Z molecular_function owl:Class GO:0035149 biolink:NamedThing lumen formation, open tracheal system Creation of the central hole of a tube in an open tracheal system through which gases flow. tmpzr1t_l9r_go_relaxed.owl tracheal lumen formation biological_process owl:Class GO:0097377 biolink:NamedThing spinal cord interneuron axon guidance The process in which the migration of an axon growth cone of a spinal cord interneuron is directed to a specific target site in response to a combination of attractive and repulsive cues. A spinal cord interneuron is a CNS interneuron located in the spinal cord. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-01T10:19:42Z biological_process owl:Class GO:0097376 biolink:NamedThing interneuron axon guidance The process in which the migration of an axon growth cone of an interneuron is directed to a specific target site in response to a combination of attractive and repulsive cues. An interneuron is any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region, as contrasted with projection neurons which have axons projecting to other brain regions. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-01T10:18:35Z biological_process owl:Class GO:0038115 biolink:NamedThing chemokine (C-C motif) ligand 19 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL19 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl C-C chemokine receptor type 7 signaling pathway|chemokine (C-C motif) ligand 19 signalling pathway|CCL19-mediated signaling pathway The C-C chemokine CCL19 s a known agonist of the chemokine receptor type 7 (CCR7). Consider instead annotating to the child term 'CCL19-activated CCR7 signaling pathway ; GO:0038119'. bf 2012-03-22T11:28:32Z biological_process owl:Class GO:0000303 biolink:NamedThing response to superoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000305 biolink:NamedThing response to oxygen radical Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033568 biolink:NamedThing lactoferrin receptor activity Combining with lactoferrin and delivering lactoferrin into the cell via endocytosis. Lactoferrin is an iron-binding glycoprotein which binds ferric iron most efficiently at low pH. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099003 biolink:NamedThing vesicle-mediated transport in synapse Any vesicle-mediated transport that occurs in a synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003373 biolink:NamedThing dynamin family protein polymerization involved in membrane fission The process of creating dynamin family protein polymers, compounds composed of a large number of dynamin family protein monomers. Dynamin family protein polymers form around lipid tubes and contribute to membrane fission. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T04:55:16Z biological_process owl:Class GO:1901658 biolink:NamedThing glycosyl compound catabolic process The chemical reactions and pathways resulting in the breakdown of glycosyl compound. tmpzr1t_l9r_go_relaxed.owl glycosyl compound degradation|glycosyl compound catabolism|glycosyl compound breakdown pr 2012-11-20T14:24:11Z biological_process owl:Class GO:0006022 biolink:NamedThing aminoglycan metabolic process The chemical reactions and pathways involving aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl aminoglycan metabolism biological_process owl:Class GO:0018336 biolink:NamedThing peptidyl-tyrosine hydroxylation The hydroxylation of peptidyl-tyrosine to form peptidyl-dihydroxyphenylalanine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045022 biolink:NamedThing early endosome to late endosome transport The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000526 biolink:NamedThing positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation Any positive regulation of glycoprotein biosynthetic process that is involved in immunological synapse formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of glycoprotein biosynthetic process of formation of immunological synapse|positive regulation of glycoprotein biosynthetic process of immunological synapse formation ebc 2011-03-23T10:42:30Z biological_process owl:Class GO:0050022 biolink:NamedThing L-arabinose 1-dehydrogenase (NAD+) activity Catalysis of the reaction: L-arabinose + NAD+ = L-arabinono-1,4-lactone + NADH. tmpzr1t_l9r_go_relaxed.owl L-arabinose 1-dehydrogenase activity|L-arabinose:NAD+ 1-oxidoreductase activity EC:1.1.1.46|RHEA:17925|MetaCyc:L-ARABINOSE-1-DEHYDROGENASE-RXN molecular_function owl:Class GO:1990133 biolink:NamedThing molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex A heterodimeric protein complex which adenylates two molecules of the sulfur carrier subunit of the molybdopterin (MPT) cofactor synthase using ATP as part of molybdopterin cofactor (Moco) biosynthesis. In E. coli the subunits are MoeB and MoaD; Moco biosynthesis and its constituent molecules are evolutionarily conserved. tmpzr1t_l9r_go_relaxed.owl bhm 2013-06-26T10:54:21Z cellular_component owl:Class GO:0009111 biolink:NamedThing vitamin catabolic process The chemical reactions and pathways resulting in the breakdown of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. tmpzr1t_l9r_go_relaxed.owl vitamin breakdown|vitamin degradation|vitamin catabolism biological_process owl:Class GO:0043289 biolink:NamedThing apocarotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of apocarotenoids by the oxidative cleavage of carotenoids. Many apocarotenoids are biologically important e.g. retinal and abscisic acid. tmpzr1t_l9r_go_relaxed.owl apo carotenoid biosynthetic process|apocarotenoid synthesis|apocarotenoid biosynthesis|apocarotenoid anabolism|apocarotenoid formation biological_process owl:Class GO:0034822 biolink:NamedThing citronellal dehydrogenase activity Catalysis of the reaction: citronellal + NAD+ + OH- = citronellate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1156 molecular_function owl:Class GO:0071761 biolink:NamedThing IgZ immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgZ isotype and two identical immunoglobulin light chains, held together by disulfide bonds. The IgZ isotype is also known as the IgT isotype in certain species of fish. tmpzr1t_l9r_go_relaxed.owl IgT antibody|IgZ antibody|IgT immunoglobulin complex Note that an IgZ immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Note that IgZ is found in bony fish, and called IgT in certain species, such as trout. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0016106 biolink:NamedThing sesquiterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of sesquiterpenoid compounds, terpenoids with three isoprene units. tmpzr1t_l9r_go_relaxed.owl sesquiterpenoid biosynthesis|sesquiterpenoid synthesis|sesquiterpenoid formation|sesquiterpenoid anabolism biological_process owl:Class GO:0140028 biolink:NamedThing pore formation during contractile vacuole discharge The formation of a transient pore in the plasma membrane and the attached contractile vacuolar membrane, to release water from the cell. This process does not involve fusion of the two membranes. tmpzr1t_l9r_go_relaxed.owl pg 2017-05-15T12:20:27Z biological_process owl:Class GO:0140029 biolink:NamedThing exocytic process The cellular processes that contribute to exocytosis. tmpzr1t_l9r_go_relaxed.owl pg 2017-05-15T13:20:45Z biological_process owl:Class GO:0019180 biolink:NamedThing dTDP-4-amino-4,6-dideoxygalactose transaminase activity Catalysis of the reaction: 2-oxoglutarate + dTDP-4-amino-4,6-dideoxy-D-galactose = L-glutamate + dTDP-4-dehydro-6-deoxy-D-galactose. tmpzr1t_l9r_go_relaxed.owl dTDP-fucosamine aminotransferase activity|thymidine diphosphate 4-keto-6-deoxy-D-glucose transaminase activity|dTDP-4,6-dideoxy-D-galactose:2-oxoglutarate aminotransferase activity|dTDP-4-amino-4,6-dideoxygalactose aminotransferase activity|thymidine diphosphoaminodideoxygalactose aminotransferase activity MetaCyc:2.6.1.59-RXN|RHEA:10368|KEGG_REACTION:R04438|EC:2.6.1.59 molecular_function owl:Class GO:0009413 biolink:NamedThing response to flooding Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating flooding, short-term immersion in water. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be confused with 'response to deep water ; GO:0030912'. Flooding refers to short-term immersion, whereas 'response to deep water ; GO:0030912' refers to standing in water throughout an organism's life cycle. biological_process owl:Class GO:1904463 biolink:NamedThing ergosteryl 3-beta-D-glucoside biosynthetic process The chemical reactions and pathways resulting in the formation of ergosteryl 3-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl ergosteryl 3-beta-D-glucoside synthesis|ergosteryl 3-beta-D-glucoside anabolism|ergosteryl 3-beta-D-glucoside formation|ergosteryl 3-beta-D-glucoside biosynthesis mcc 2015-07-09T19:36:31Z biological_process owl:Class GO:1904022 biolink:NamedThing positive regulation of G protein-coupled receptor internalization Any process that activates or increases the frequency, rate or extent of G protein-coupled receptor internalization. tmpzr1t_l9r_go_relaxed.owl up-regulation of G-protein coupled receptor internalization|positive regulation of G-protein coupled receptor internalization|upregulation of G-protein coupled receptor internalization|up regulation of G-protein coupled receptor internalization|activation of G-protein coupled receptor internalization pga 2015-03-10T17:10:56Z biological_process owl:Class GO:0106258 biolink:NamedThing L-serine-phosphatidylcholine phosphatidyltransferase activity Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phosphocholine + L-serine = 1,2-diacyl-sn-glycero-3-phospho-L-serine + choline. tmpzr1t_l9r_go_relaxed.owl RHEA:45088 hjd 2020-04-21T17:31:56Z molecular_function owl:Class GO:0075291 biolink:NamedThing positive regulation of aplanospore formation Any process that activates, maintains or increases the frequency, rate or extent of aplanospore formation, a process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010960 biolink:NamedThing magnesium ion homeostasis Any process involved in the maintenance of an internal steady state of magnesium ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-06T11:47:17Z biological_process owl:Class GO:0045678 biolink:NamedThing positive regulation of R7 cell differentiation Any process that activates or increases the frequency, rate or extent of R7 cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of R7 differentiation|up-regulation of R7 differentiation|up regulation of R7 differentiation|upregulation of R7 differentiation|positive regulation of R7 differentiation|stimulation of R7 differentiation biological_process owl:Class GO:0045272 biolink:NamedThing plasma membrane respiratory chain complex I A subcomplex of the respiratory chain located in the plasma membrane. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. Examples of this component are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl NADH dehydrogenase (ubiquinone) complex|respiratory chain complex I cellular_component owl:Class GO:0047208 biolink:NamedThing o-dihydroxycoumarin 7-O-glucosyltransferase activity Catalysis of the reaction: 7,8-dihydroxycoumarin + UDP-D-glucose = daphnin + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:o-dihydroxycoumarin glucosyltransferase activity|UDPglucose:7,8-dihydroxycoumarin 7-O-beta-D-glucosyltransferase activity|UDP-glucose:7,8-dihydroxycoumarin 7-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-o-dihydroxycoumarin 7-O-glucosyltransferase activity EC:2.4.1.104|RHEA:14325|KEGG_REACTION:R03548|MetaCyc:2.4.1.104-RXN molecular_function owl:Class GO:1904213 biolink:NamedThing negative regulation of iodide transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of iodide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl downregulation of iodide transmembrane transport|inhibition of iodide transmembrane transport|down regulation of iodide transmembrane transport|down-regulation of iodide transmembrane transport sl 2015-05-14T19:00:08Z biological_process owl:Class GO:0048275 biolink:NamedThing N-terminal peptidyl-arginine acetylation The acetylation of the N-terminal arginine of proteins; catalyzed by an uncharacterized arginyl-peptide alpha-N-acetyltransferase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0354 biological_process owl:Class GO:0106391 biolink:NamedThing bI4 intron splicing complex A protein complex required for the splicing of intron 4 of the cytochrome b (COB) gene. In S. cerevisiae, the complex contains the maturase bI4 (which derives from one of the products of the splicing), Leucyl-tRNA synthetase NAM2 and the intron 4 of the cytochrome b pre-mRNA. The two proteins stimulate the ribozyme activity of the pre-mRNA which autoctalyse a group I intron splicing. tmpzr1t_l9r_go_relaxed.owl Intact:EBI-16420264 hjd 2021-10-08T14:28:33Z cellular_component owl:Class GO:0008861 biolink:NamedThing formate C-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + formate = CoA + pyruvate. tmpzr1t_l9r_go_relaxed.owl pyruvic formate-lyase activity|pyruvate formate:lyase activity|pyruvate formate-lyase activity|PFL|formate acetyltransferase activity|acetyl-CoA:formate C-acetyltransferase activity MetaCyc:PYRUVFORMLY-RXN|RHEA:11844|EC:2.3.1.54 molecular_function owl:Class GO:0070628 biolink:NamedThing proteasome binding Binding to a proteasome, a large multisubunit protein complex that catalyzes protein degradation. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-01T04:38:58Z molecular_function owl:Class GO:0070593 biolink:NamedThing dendrite self-avoidance The process in which dendrites recognize and avoid contact with sister dendrites from the same cell. tmpzr1t_l9r_go_relaxed.owl dendrite repulsion mah 2009-04-28T03:29:14Z biological_process owl:Class GO:0102485 biolink:NamedThing dATP phosphohydrolase activity Catalysis of the reaction: dATP + 2 H2O = dAMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14195|EC:3.6.1.5 molecular_function owl:Class GO:0008388 biolink:NamedThing testosterone 15-alpha-hydroxylase activity Catalysis of the reaction: testosterone + donor-H2 + O2 = 15-alpha-hydroxytestosterone + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2A4 molecular_function owl:Class GO:0009522 biolink:NamedThing photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000350 biolink:NamedThing positive regulation of CD40 signaling pathway Any process that activates or increases the frequency, rate or extent of signaling via the CD40 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD40 signalling pathway mah 2011-02-03T10:29:46Z biological_process owl:Class GO:0031965 biolink:NamedThing nuclear membrane Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1687101204 cellular_component owl:Class GO:0050445 biolink:NamedThing asparagusate reductase activity Catalysis of the reaction: 3-mercapto-2-mercaptomethylpropanoate + NAD(+) = asparagusate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl asparagusate reductase (NADH2)|3-mercapto-2-mercaptomethylpropanoate:NAD+ oxidoreductase activity|NADH2:asparagusate oxidoreductase activity|asparagusate dehydrogenase activity|asparagusate reductase (NADH) activity|NADH:asparagusate oxidoreductase activity|asparagusic dehydrogenase activity RHEA:14881|MetaCyc:ASPARAGUSATE-REDUCTASE-NADH-RXN|KEGG_REACTION:R03761|EC:1.8.1.11 molecular_function owl:Class GO:0060523 biolink:NamedThing prostate epithelial cord elongation The developmental growth process in which solid chords of prostate epithelium increase in length. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900171 biolink:NamedThing positive regulation of glucocorticoid mediated signaling pathway Any process that activates or increases the frequency, rate or extent of glucocorticoid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of glucocorticoid mediated signaling pathway|up regulation of glucocorticoid mediated signaling pathway|up-regulation of glucocorticoid mediated signaling pathway|activation of glucocorticoid mediated signalling|upregulation of glucocorticoid mediated signaling pathway|up-regulation of glucocorticoid mediated signalling|up regulation of glucocorticoid mediated signalling|positive regulation of glucocorticoid mediated signalling|upregulation of glucocorticoid mediated signalling hjd 2012-03-08T08:33:23Z biological_process owl:Class GO:0006729 biolink:NamedThing tetrahydrobiopterin biosynthetic process The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine. tmpzr1t_l9r_go_relaxed.owl tetrahydrobiopterin biosynthesis|tetrahydrobiopterin synthesis|tetrahydrobiopterin formation|tetrahydrobiopterin anabolism|5,6,7,8-tetrahydrobiopterin biosynthetic process biological_process owl:Class GO:0046146 biolink:NamedThing tetrahydrobiopterin metabolic process The chemical reactions and pathways involving tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydrobiopterin metabolic process|tetrahydrobiopterin metabolism biological_process owl:Class GO:0032708 biolink:NamedThing negative regulation of interleukin-24 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-24 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-24 biosynthetic process|downregulation of interleukin-24 production|down regulation of interleukin-24 production|negative regulation of IL-24 production|down-regulation of interleukin-24 production|inhibition of interleukin-24 production GO:0045532 biological_process owl:Class GO:0032668 biolink:NamedThing regulation of interleukin-24 production Any process that modulates the frequency, rate, or extent of interleukin-24 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-24 production|regulation of interleukin-24 biosynthetic process GO:0045528 biological_process owl:Class GO:0018876 biolink:NamedThing benzonitrile metabolic process The chemical reactions and pathways involving benzonitrile. Benzonitrile is used as a solvent and chemical intermediate in the pharmaceutical, dyestuffs and rubber industries. It is highly toxic and harmful in contact with skin. tmpzr1t_l9r_go_relaxed.owl benzonitrile metabolism UM-BBD_pathwayID:bzn biological_process owl:Class GO:0033337 biolink:NamedThing dorsal fin development The process whose specific outcome is the progression of the dorsal fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036325 biolink:NamedThing vascular endothelial growth factor receptor-3 signaling pathway Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor-3 (VEGFR-3) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGFR-3 signaling pathway|FLT4 signaling pathway|VEGFR3 signaling pathway bf 2012-09-04T15:25:13Z biological_process owl:Class GO:0032847 biolink:NamedThing regulation of cellular pH reduction Any process that modulates the frequency, rate, or extent of a process that reduces the internal pH of a cell. tmpzr1t_l9r_go_relaxed.owl regulation of cell pH reduction|regulation of intracellular acidification|regulation of reduction of cellular pH|regulation of reduction of pH in cell|regulation of cellular acidification|regulation of intracellular pH reduction biological_process owl:Class GO:0051453 biolink:NamedThing regulation of intracellular pH Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl cellular pH regulation|regulation of cell pH|pH regulation in cell|cell pH regulation biological_process owl:Class GO:0043607 biolink:NamedThing formamide biosynthetic process The chemical reactions and pathways resulting in the formation of formamide, the simplest amide, HCONH2, derived from formic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036496 biolink:NamedThing regulation of translational initiation by eIF2 alpha dephosphorylation Any process that modulates the frequency, rate or extent of translation initiation in response to stress by the dephosphorylation of eIF2 alpha. tmpzr1t_l9r_go_relaxed.owl bf 2015-02-05T10:21:31Z biological_process owl:Class GO:0072756 biolink:NamedThing cellular response to paraquat Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T12:08:59Z biological_process owl:Class GO:1901562 biolink:NamedThing response to paraquat Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-02T15:32:41Z biological_process owl:Class GO:0090679 biolink:NamedThing cell differentiation involved in phenotypic switching A cell differentiation process that is a part of a reversible switch of a cell from one cell type or form to another, at a frequency above the expected frequency for somatic mutations. tmpzr1t_l9r_go_relaxed.owl tb 2016-04-28T17:32:40Z biological_process owl:Class GO:0034703 biolink:NamedThing cation channel complex An ion channel complex through which cations pass. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0020014 biolink:NamedThing schizogony Cell division by multiple fission in which nuclei and other organelles in the parent cell divide repeatedly and move to the cell periphery before internal membranes develop around them, producing a large number of daughter cells simultaneously. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Protozoal_merogony biological_process owl:Class GO:0015288 biolink:NamedThing porin activity Enables the transfer of substances, sized less than 1000 Da, from one side of a membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl porin|outer membrane exporter porin Wikipedia:Porin_(protein) molecular_function owl:Class GO:0022829 biolink:NamedThing wide pore channel activity Enables the transport of a solute across a membrane via a large pore, un-gated channel. Examples include gap junctions, which transport substances from one cell to another; and porins which transport substances in and out of bacteria, mitochondria and chloroplasts. tmpzr1t_l9r_go_relaxed.owl gap junction activity|non-gated, wide pore channel activity molecular_function owl:Class GO:0048635 biolink:NamedThing negative regulation of muscle organ development Any process that stops, prevents, or reduces the frequency, rate or extent of muscle development. tmpzr1t_l9r_go_relaxed.owl down regulation of muscle development|downregulation of muscle development|down-regulation of muscle development|inhibition of muscle development biological_process owl:Class GO:0061367 biolink:NamedThing behavioral response to acetic acid induced pain Any process that results in a change in the behaviour of an organism as a result of an acetic acid pain stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-21T03:26:31Z biological_process owl:Class GO:1990103 biolink:NamedThing DnaA-HU complex A protein-DNA complex containing DNA-bound DnaA attached to HU. HU is a dimer encoded by two closely related genes. Essential for the initiation of replication in bacteria; stimulates the DnaA-dependent unwinding of oriC. tmpzr1t_l9r_go_relaxed.owl DnaA-HU-DNA complex bhm 2013-05-14T12:36:39Z cellular_component owl:Class GO:1990077 biolink:NamedThing primosome complex Any of a family of protein complexes that form at the origin of replication or stalled replication forks and function in replication primer synthesis in all organisms. Early complexes initiate double-stranded DNA unwinding. The core unit consists of a replicative helicase and a primase. The helicase further unwinds the DNA and recruits the polymerase machinery. The primase synthesizes RNA primers that act as templates for complementary stand replication by the polymerase machinery. The primosome contains a number of associated proteins and protein complexes and contributes to the processes of replication initiation, lagging strand elongation, and replication restart. tmpzr1t_l9r_go_relaxed.owl primosome bhm 2013-04-26T11:55:28Z cellular_component owl:Class GO:0071930 biolink:NamedThing negative regulation of transcription involved in G1/S transition of mitotic cell cycle Any process that stop, prevents or decreases transcription as part of the G1/S transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter involved in G1/S transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter during G1/S phase of mitotic cell cycle mah 2010-09-29T11:12:11Z biological_process owl:Class GO:0000083 biolink:NamedThing regulation of transcription involved in G1/S transition of mitotic cell cycle Any process that regulates transcription such that the target genes are involved in the transition between G1 and S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016156 biolink:NamedThing fumarate reductase (NADH) activity Catalysis of the reaction: NAD(+) + succinate = fumarate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl succinate:NAD+ oxidoreductase activity|NADH-dependent fumarate reductase activity|NADH-fumarate reductase activity EC:1.3.1.6|KEGG_REACTION:R00402|RHEA:18281|MetaCyc:FUMARATE-REDUCTASE-NADH-RXN molecular_function owl:Class GO:0033415 biolink:NamedThing UGA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UGA codon. tmpzr1t_l9r_go_relaxed.owl TGA codon-amino acid adaptor activity Note that in the standard genetic code, TGA is a stop codon (opal) and is not normally read by a tRNA. molecular_function owl:Class GO:0033061 biolink:NamedThing DNA recombinase mediator complex A protein complex containing accessory proteins which bind a recombinase (e.g. Rad51) and bind single-stranded DNA (ssDNA), and promote nucleation of the recombinase onto ssDNA through facilitating recombinase-RPA exchange. tmpzr1t_l9r_go_relaxed.owl Many paralogs of Rad51 act as recombinase mediators. These paralogs dimerize (or occasionally form tetramers) amongst themselves to form complexes with ssDNA-binding activity, and which act as mediators of Rad51 presynaptic filament assembly. cellular_component owl:Class GO:0021988 biolink:NamedThing olfactory lobe development The progression of the olfactory lobe over time from its initial formation until its mature state. The olfactory lobe is the area of the brain that process the neural inputs for the sense of smell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990023 biolink:NamedThing mitotic spindle midzone The area in the center of the anaphase spindle consisting of microtubules, microtubule bundling factors and kinesin motors where the spindle microtubules from opposite poles overlap in an antiparallel manner. tmpzr1t_l9r_go_relaxed.owl vw 2013-02-05T15:41:48Z cellular_component owl:Class GO:0051233 biolink:NamedThing spindle midzone The area in the center of the spindle where the spindle microtubules from opposite poles overlap. tmpzr1t_l9r_go_relaxed.owl spindle equator|central spindle cellular_component owl:Class GO:0071258 biolink:NamedThing cellular response to gravity Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to gravitational stimulus mah 2009-12-04T03:31:36Z biological_process owl:Class GO:0004339 biolink:NamedThing glucan 1,4-alpha-glucosidase activity Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl exo-1,4-alpha-glucosidase activity|amyloglucosidase activity|1,4-alpha-D-glucan glucohydrolase activity|glucoamylase activity|gamma-1,4-glucan glucohydrolase activity|lysosomal alpha-glucosidase activity|glucose amylase activity|gamma-amylase activity EC:3.2.1.3|MetaCyc:3.2.1.3-RXN Note that this term is not a child of 'alpha-glucosidase activity ; GO:0090599', because in the reaction represented by GO:0004339 results in the release of beta-D-glucose, whereas in GO:0090599 alpha-D-glucose is released. molecular_function owl:Class GO:0086074 biolink:NamedThing Purkinje myocyte-ventricular cardiac muscle cell adhesion involved in cell communication The attachment of an Purkinje myocyte to a ventricular cardiac muscle cell via adhesion molecules that results in the cells being juxtaposed so that they can communicate. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:02:24Z biological_process owl:Class GO:0035175 biolink:NamedThing histone kinase activity (H3-S10 specific) Catalysis of the transfer of a phosphate group to the serine-10 residue of the N-terminal tail of histone H3. tmpzr1t_l9r_go_relaxed.owl histone serine kinase activity (H3-S10 specific)|histone kinase activity (H3-S3 specific)|histone-serine kinase activity (H3-S10 specific) GO:0044021 molecular_function owl:Class GO:1902976 biolink:NamedThing premeiotic DNA replication preinitiation complex assembly Any DNA replication preinitiation complex assembly that is involved in meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl pre-IC complex assembly involved in meiotic cell cycle|DNA replication preinitiation complex formation involved in meiotic cell cycle jl 2014-05-06T19:19:31Z biological_process owl:Class GO:1901649 biolink:NamedThing negative regulation of actomyosin contractile ring localization Any process that stops, prevents or reduces the frequency, rate or extent of actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl down-regulation of contractile ring localization involved in cell cycle cytokinesis|inhibition of actomyosin contractile ring localization|inhibition of contractile ring localization involved in cell cycle cytokinesis|negative regulation of contractile ring localization involved in cell cycle cytokinesis|negative regulation of contractile ring localisation involved in cell cycle cytokinesis|down-regulation of contractile ring localisation involved in cell cycle cytokinesis|inhibition of contractile ring localisation involved in cell cycle cytokinesis|downregulation of contractile ring localization involved in cell cycle cytokinesis|downregulation of contractile ring localisation involved in cell cycle cytokinesis|downregulation of actomyosin contractile ring localization|down regulation of contractile ring localisation involved in cell cycle cytokinesis|down-regulation of actomyosin contractile ring localization|down regulation of contractile ring localization involved in cell cycle cytokinesis|down regulation of actomyosin contractile ring localization vw 2012-11-19T13:42:49Z biological_process owl:Class GO:0010725 biolink:NamedThing regulation of primitive erythrocyte differentiation Any process that modulates the rate, frequency, or extent of primitive erythrocyte differentiation. Primitive erythrocyte differentiation occurs as part of the process of primitive hemopoiesis. tmpzr1t_l9r_go_relaxed.owl regulation of primitive erythropoeisis|regulation of primitive red blood cell differentiation|regulation of primitive RBC differentiation biological_process owl:Class GO:0080192 biolink:NamedThing primary thickening Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from the activity of a primary thickening meristem. tmpzr1t_l9r_go_relaxed.owl Occurs in shoot axes and rarely in roots in many monocotyledons. dhl 2012-12-06T15:55:18Z biological_process owl:Class GO:0039574 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of host TYK2 activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of a JAK1-STAT signaling cascade in a host organism by reducing the activity of host TYK2 (tyrosine kinase 2). TYK2 is an intracellular signal-transducing tyrosine kinase that associates with the cytoplasmic tails of cytokine receptors and transmits the cytokine signal by phosphorylating receptor subunits. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host TYK2 activity|suppression by virus of host non-receptor tyrosine-protein kinase TYK2 activity https://github.com/geneontology/go-ontology/issues/21986 bf biological_process owl:Class GO:0140720 biolink:NamedThing subtelomeric heterochromatin Heterochromatin that is located adjacent to the telomere, and characterized by methylated H3 histone at lysine 9 (H3K9me2/H3K9me3). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22353 pg 2021-11-05T13:19:40Z cellular_component owl:Class GO:0034316 biolink:NamedThing negative regulation of Arp2/3 complex-mediated actin nucleation Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904434 biolink:NamedThing positive regulation of ferrous iron binding Any process that activates or increases the frequency, rate or extent of ferrous iron binding. tmpzr1t_l9r_go_relaxed.owl activation of ferrous iron binding|up regulation of ferrous iron binding|up-regulation of ferrous iron binding|upregulation of ferrous iron binding kom 2015-07-06T13:46:42Z biological_process owl:Class GO:1901425 biolink:NamedThing response to formic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a formic acid stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T18:43:05Z biological_process owl:Class GO:0002573 biolink:NamedThing myeloid leukocyte differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte lineage. tmpzr1t_l9r_go_relaxed.owl myeloid leucocyte differentiation biological_process owl:Class GO:0003934 biolink:NamedThing GTP cyclohydrolase I activity Catalysis of the reaction: GTP + H2O = formate + 7,8-dihydroneopterin 3'-triphosphate. tmpzr1t_l9r_go_relaxed.owl GTP 7,8-8,9-dihydrolase activity|dihydroneopterin triphosphate synthase activity|guanosine triphosphate cyclohydrolase activity|guanosine triphosphate 8-deformylase activity|GTP 8-formylhydrolase activity EC:3.5.4.16|Reactome:R-HSA-1474146|RHEA:17473|MetaCyc:GTP-CYCLOHYDRO-I-RXN|KEGG_REACTION:R00424 molecular_function owl:Class GO:0003933 biolink:NamedThing GTP cyclohydrolase activity Catalysis of the hydrolysis of the imidazole ring of GTP, releasing formate. Two C-N bonds are hydrolyzed and the pentase unit is isomerized. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045654 biolink:NamedThing positive regulation of megakaryocyte differentiation Any process that activates or increases the frequency, rate or extent of megakaryocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of megakaryocyte differentiation|activation of megakaryocyte differentiation|upregulation of megakaryocyte differentiation|stimulation of megakaryocyte differentiation|up-regulation of megakaryocyte differentiation biological_process owl:Class GO:1990696 biolink:NamedThing USH2 complex A protein complex composed of four proteins, loss of which results in Usher Syndrome type 2 (USH2 syndrome), a leading genetic cause of combined hearing and vision loss. This complex is conserved in many species; in mice, it is composed of USH2A, GPR98 (aka ADGRV1), WHRN, and PDZD7. tmpzr1t_l9r_go_relaxed.owl USH2 quaternary protein complex krc 2015-03-12T17:29:18Z cellular_component owl:Class GO:0031291 biolink:NamedThing Ran protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Ran family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902913 biolink:NamedThing positive regulation of neuroepithelial cell differentiation Any process that activates or increases the frequency, rate or extent of neuroepithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of neuroepithelial cell differentiation|up regulation of neuroepithelial cell differentiation|activation of neuroepithelial cell differentiation|up-regulation of neuroepithelial cell differentiation mr 2014-04-18T21:06:42Z biological_process owl:Class GO:0004126 biolink:NamedThing cytidine deaminase activity Catalysis of the reaction: cytidine + H2O = uridine + NH3. tmpzr1t_l9r_go_relaxed.owl cytosine nucleoside deaminase activity|cytidine aminohydrolase activity Reactome:R-HSA-73608|Reactome:R-HSA-83677|RHEA:16069|EC:3.5.4.5|MetaCyc:CYTIDEAM2-RXN molecular_function owl:Class GO:0002059 biolink:NamedThing thymine binding Binding to thymine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002061 biolink:NamedThing pyrimidine nucleobase binding Binding to a pyrimidine nucleobase, an organic nitrogenous base with a pyrimidine skeleton. tmpzr1t_l9r_go_relaxed.owl 1,3-diazine binding|pyrimidine binding|pyrimidine base binding molecular_function owl:Class GO:0051327 biolink:NamedThing meiotic M phase A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl M phase of meiotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1904751 biolink:NamedThing positive regulation of protein localization to nucleolus Any process that activates or increases the frequency, rate or extent of protein localization to nucleolus. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localization in nucleolus|up-regulation of protein localization to nucleolus|up-regulation of protein localisation in nucleolus|upregulation of protein localization in nucleolus|up regulation of protein localisation to nucleolus|activation of protein localisation to nucleolus|upregulation of protein localisation to nucleolus|activation of protein localization in nucleolus|up-regulation of protein localisation to nucleolus|upregulation of protein localisation in nucleolus|up regulation of protein localisation in nucleolus|up-regulation of protein localization in nucleolus|up regulation of protein localization to nucleolus|up regulation of protein localization in nucleolus|positive regulation of protein localisation in nucleolus|activation of protein localization to nucleolus|activation of protein localisation in nucleolus|upregulation of protein localization to nucleolus|positive regulation of protein localisation to nucleolus nc 2015-10-19T15:16:30Z biological_process owl:Class GO:0000242 biolink:NamedThing pericentriolar material A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903799 biolink:NamedThing negative regulation of production of miRNAs involved in gene silencing by miRNA Any process that stops, prevents or reduces the frequency, rate or extent of production of miRNAs involved in gene silencing by miRNA. tmpzr1t_l9r_go_relaxed.owl downregulation of miRNA-mediated gene silencing, production of miRNAs|negative regulation of microRNA biosynthesis|negative regulation of miRNA biogenesis|inhibition of gene silencing by miRNA, production of miRNAs|inhibition of microRNA biosynthetic process|negative regulation of production of microRNAs involved in gene silencing by microRNA|downregulation of miRNA biogenesis|negative regulation of miRNA processing|negative regulation of microRNA-mediated gene silencing, production of microRNAs|downregulation of microRNA metabolic process|downregulation of microRNA biosynthetic process|negative regulation of microRNA metabolism|down regulation of microRNA biosynthetic process|down-regulation of miRNA processing|inhibition of microRNA metabolism|down-regulation of miRNA biogenesis|down-regulation of production of miRNAs involved in gene silencing by miRNA|negative regulation of microRNA biogenesis|down-regulation of microRNA metabolism|down regulation of microRNA biosynthesis|inhibition of miRNA biogenesis|down-regulation of miRNA-mediated gene silencing, production of miRNAs|downregulation of gene silencing by miRNA, production of miRNAs|down-regulation of gene silencing by miRNA, production of miRNAs|inhibition of microRNA metabolic process|negative regulation of miRNA-mediated gene silencing, production of miRNAs|inhibition of miRNA processing|down-regulation of microRNA biosynthetic process|downregulation of microRNA-mediated gene silencing, production of microRNAs|down-regulation of microRNA-mediated gene silencing, production of microRNAs|downregulation of production of microRNAs involved in gene silencing by microRNA|down regulation of production of microRNAs involved in gene silencing by microRNA|down regulation of microRNA-mediated gene silencing, production of microRNAs|negative regulation of gene silencing by miRNA, production of miRNAs|down regulation of gene silencing by miRNA, production of miRNAs|inhibition of microRNA biosynthesis|downregulation of microRNA biosynthesis|down-regulation of microRNA biosynthesis|down-regulation of microRNA metabolic process|down regulation of miRNA biogenesis|down regulation of miRNA processing|negative regulation of microRNA metabolic process|down regulation of microRNA biogenesis|down-regulation of production of microRNAs involved in gene silencing by microRNA|down-regulation of microRNA biogenesis|inhibition of miRNA-mediated gene silencing, production of miRNAs|down regulation of production of miRNAs involved in gene silencing by miRNA|downregulation of microRNA metabolism|downregulation of miRNA processing|inhibition of production of miRNAs involved in gene silencing by miRNA|negative regulation of microRNA biosynthetic process|down regulation of microRNA metabolism|inhibition of microRNA-mediated gene silencing, production of microRNAs|inhibition of microRNA biogenesis|downregulation of microRNA biogenesis|inhibition of production of microRNAs involved in gene silencing by microRNA|down regulation of microRNA metabolic process|down regulation of miRNA-mediated gene silencing, production of miRNAs|downregulation of production of miRNAs involved in gene silencing by miRNA rph 2015-01-15T13:58:22Z biological_process owl:Class GO:1903798 biolink:NamedThing regulation of production of miRNAs involved in gene silencing by miRNA Any process that modulates the frequency, rate or extent of production of miRNAs involved in gene silencing by miRNA. tmpzr1t_l9r_go_relaxed.owl regulation of microRNA processing|regulation of miRNA biogenesis|regulation of miRNA-mediated gene silencing, production of miRNAs|regulation of microRNA biogenesis|regulation of microRNA metabolism|regulation of microRNA metabolic process|regulation of gene silencing by miRNA, production of miRNAs|regulation of microRNA biosynthetic process|regulation of microRNA-mediated gene silencing, production of microRNAs|regulation of production of microRNAs involved in gene silencing by microRNA|regulation of microRNA biosynthesis|regulation of miRNA processing rph 2015-01-15T13:58:12Z biological_process owl:Class GO:0007505 biolink:NamedThing adult fat body development The process whose specific outcome is the progression of the adult fat body over time, from its formation to the mature structure. Larval fat body cells that remain at eclosion degenerate in the first 2 to 4 days of adult life, leaving behind the smaller cells of the adult fat body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106163 biolink:NamedThing regulation of exonucleolytic catabolism of deadenylated mRNA Any process that modulates the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl hjd 2019-01-15T15:33:08Z biological_process owl:Class GO:0035241 biolink:NamedThing protein-arginine omega-N monomethyltransferase activity Catalysis of the addition of a methyl group to either of the unmethylated terminal nitrogen atoms (also called omega nitrogen) in peptidyl-arginine to form an omega-N-G-monomethylated arginine residue. The reaction is S-adenosyl-L-methionine + [protein]-L-arginine = S-adenosyl-L-homocysteine + [protein]-Nomega-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl type III protein arginine methyltransferase activity|S-adenosyl-L-methionine:[protein]-L-arginine N-methyltransferase ([protein]-Nomega-methyl-L-arginine-forming) EC:2.1.1.321|RHEA:48100|RESID:AA0069 Type III protein arginine methyltransferases catalyze the single methylation of one of the terminal nitrogen atoms of the guanidino group in an L-arginine residue within a protein. Unlike type I and type II protein arginine methyltransferases, which also catalyze this reaction, type III enzymes do not methylate the substrate any further. molecular_function owl:Class GO:0062171 biolink:NamedThing lutein biosynthetic process The chemical reactions and pathways resulting in the formation of lutein. tmpzr1t_l9r_go_relaxed.owl lutein formation|lutein anabolism|lutein biosynthesis dph 2019-11-18T16:01:00Z biological_process owl:Class GO:0071126 biolink:NamedThing alphaV-beta6 integrin-osteopontin complex A protein complex that consists of an alphaV-beta6 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB6-SPP1 complex mah 2009-11-13T02:23:43Z cellular_component owl:Class GO:1900266 biolink:NamedThing negative regulation of substance P receptor binding Any process that stops, prevents or reduces the frequency, rate or extent of substance P receptor binding. tmpzr1t_l9r_go_relaxed.owl downregulation of neurokinin-1 receptor binding|inhibition of substance P receptor binding|downregulation of substance P receptor binding|negative regulation of neurokinin-1 receptor binding|inhibition of neurokinin-1 receptor binding|down regulation of substance P receptor binding|downregulation of substance P receptor ligand|down-regulation of substance P receptor ligand|down regulation of neurokinin-1 receptor binding|down regulation of substance P receptor ligand|inhibition of substance P receptor ligand|negative regulation of substance P receptor ligand|down-regulation of substance P receptor binding|down-regulation of neurokinin-1 receptor binding tb 2012-04-03T11:11:36Z biological_process owl:Class GO:0032364 biolink:NamedThing oxygen homeostasis A homeostatic process involved in the maintenance of an internal steady state of oxygen within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033483 biolink:NamedThing gas homeostasis A homeostatic process involved in the maintenance of an internal steady state of a gas within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905469 biolink:NamedThing negative regulation of clathrin-coated pit assembly Any process that stops, prevents or reduces the frequency, rate or extent of clathrin-coated pit assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of coated pit assembly|inhibition of coated pit formation|down-regulation of clathrin-coated pit assembly|downregulation of coated pit formation|inhibition of clathrin-coated pit assembly|down regulation of coated pit formation|inhibition of coated pit assembly|negative regulation of clathrin-coated pit formation|negative regulation of coated pit formation|down-regulation of coated pit formation|negative regulation of coated pit assembly|down regulation of coated pit assembly|inhibition of clathrin-coated pit formation|downregulation of coated pit assembly|down regulation of clathrin-coated pit formation|downregulation of clathrin-coated pit formation|down regulation of clathrin-coated pit assembly|downregulation of clathrin-coated pit assembly|down-regulation of clathrin-coated pit formation bf 2016-09-20T10:04:45Z biological_process owl:Class GO:0006649 biolink:NamedThing phospholipid transfer to membrane The transfer of a phospholipid from its site of synthesis to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035719 biolink:NamedThing tRNA import into nucleus The directed movement of tRNA from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl retrograde tRNA transport into nucleus|tRNA nuclear import bf 2011-03-03T04:32:35Z biological_process owl:Class GO:0033924 biolink:NamedThing dextran 1,6-alpha-isomaltotriosidase activity Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in dextrans, to remove successive isomaltotriose units from the non-reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl 1,6-alpha-D-glucan isomaltotriohydrolase activity|exo-isomaltotriohydrolase activity MetaCyc:3.2.1.95-RXN|EC:3.2.1.95 molecular_function owl:Class GO:0098541 biolink:NamedThing cytoplasmic side of trans-Golgi network transport vesicle membrane The side (leaflet) of the trans-Golgi network transport vesicle membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external side of trans-Golgi network transport vesicle membrane dos 2013-10-24T11:56:30Z cellular_component owl:Class GO:0033875 biolink:NamedThing ribonucleoside bisphosphate metabolic process The chemical reactions and pathways involving a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside bisphosphate metabolism biological_process owl:Class GO:0106093 biolink:NamedThing EDS1 disease-resistance complex A plant complex involved in basal disease resistance and resistance (R) gene-mediated effector triggered immunity (ETI). Regulates accumulation of the hormone salicylic acid (SA) which is a necessary component of systemic immunity. Involved in responds to bacteria, viruses and oomycetes. tmpzr1t_l9r_go_relaxed.owl EDS1-PAD4 complex|EDS1-PAD4-SAG101 complex|EDS1-SAG101 complex Interacts with the R genes triggering ETI and systemic resistance. hjd 2018-01-29T20:02:47Z cellular_component owl:Class GO:0102962 biolink:NamedThing 4,4'-diapo-zeta-carotene desaturase activity Catalysis of the reaction: all-trans-4,4'-diapo-zeta-carotene + FAD + H+ = 4,4'-diaponeurosporene + FADH2. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9305|RHEA:31403 molecular_function owl:Class GO:1904206 biolink:NamedThing positive regulation of skeletal muscle hypertrophy Any process that activates or increases the frequency, rate or extent of skeletal muscle hypertrophy. tmpzr1t_l9r_go_relaxed.owl activation of skeletal muscle hypertrophy|up-regulation of skeletal muscle hypertrophy|up regulation of skeletal muscle hypertrophy|upregulation of skeletal muscle hypertrophy sl 2015-05-08T17:38:25Z biological_process owl:Class GO:0071604 biolink:NamedThing transforming growth factor beta production The appearance of any member of the transforming growth factor-beta family of cytokines due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Transforming growth factor-beta family members include TGF-B1, TGF-B2, and TGF-B3. tmpzr1t_l9r_go_relaxed.owl TGFb production|TGFbeta production|transforming growth factor-beta secretion|TGF-B production|transforming growth factor-beta production|TGF-beta production mah 2010-02-05T03:56:57Z GO:0038044 biological_process owl:Class GO:0090314 biolink:NamedThing positive regulation of protein targeting to membrane Any process that increases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-16T03:42:22Z biological_process owl:Class GO:0032841 biolink:NamedThing calcitonin binding Binding to calcitonin, a peptide hormone responsible for reducing serum calcium levels by inhibiting osteoclastic bone reabsorption and promoting renal calcium excretion. It is synthesized and released by the C cells of the thyroid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990831 biolink:NamedThing cellular response to carcinoembryonic antigen Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carcinoembryonic antigen stimulus. The carcinoembryonic antigens represent a family of glycoproteins. tmpzr1t_l9r_go_relaxed.owl cellular response to pregnancy specific glycoprotein sl 2015-08-20T19:43:12Z biological_process owl:Class GO:0099013 biolink:NamedThing neuronal dense core vesicle lumen The volume enclosed by a neuronal dense core vesicle membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002427 biolink:NamedThing mucosal tolerance induction Tolerance induction taking place in the mucosal tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002462 biolink:NamedThing tolerance induction to nonself antigen Tolerance induction in response to nonself antigens. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110139 biolink:NamedThing negative regulation of imaginal disc-derived leg joint morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis. tmpzr1t_l9r_go_relaxed.owl kmv 2019-02-12T15:40:09Z biological_process owl:Class GO:1900154 biolink:NamedThing regulation of bone trabecula formation Any process that modulates the frequency, rate or extent of bone trabecula formation. tmpzr1t_l9r_go_relaxed.owl regulation of skeletal trabeculation|regulation of bone trabeculation|regulation of skeletal trabecula biogenesis|regulation of skeletal trabecula formation|regulation of bone trabecula biogenesis vk 2012-03-07T01:47:03Z biological_process owl:Class GO:0047699 biolink:NamedThing beta-diketone hydrolase activity Catalysis of the reaction: H(2)O + nonane-4,6-dione = butanoate + H(+) + pentan-2-one. tmpzr1t_l9r_go_relaxed.owl b-diketone hydrolase activity|oxidized PVA hydrolase activity|nonane-4,6-dione acylhydrolase activity EC:3.7.1.7|RHEA:11908|MetaCyc:BETA-DIKETONE-HYDROLASE-RXN|KEGG_REACTION:R03781 molecular_function owl:Class GO:0015400 biolink:NamedThing low-affinity secondary active ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity ammonium transmembrane transporter activity|low affinity secondary active ammonium transmembrane transporter activity molecular_function owl:Class GO:0034937 biolink:NamedThing perchlorate reductase activity Catalysis of the reaction: perchlorate + 2 H+ + 2 e- = chlorate + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0980 molecular_function owl:Class GO:0033865 biolink:NamedThing nucleoside bisphosphate metabolic process The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside bisphosphate metabolism biological_process owl:Class GO:0034605 biolink:NamedThing cellular response to heat Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl cellular response to heat stress biological_process owl:Class GO:1904335 biolink:NamedThing regulation of ductus arteriosus closure Any process that modulates the frequency, rate or extent of ductus arteriosus closure. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-11T17:45:15Z biological_process owl:Class GO:0014019 biolink:NamedThing neuroblast development The process aimed at the progression of a neuroblast over time, from initial commitment of the cell to a specific state, to the mature neuroblast. It does not include processes where the neuroblast turns into a glial cell or a neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015934 biolink:NamedThing large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). tmpzr1t_l9r_go_relaxed.owl ribosomal large subunit cellular_component owl:Class GO:0044391 biolink:NamedThing ribosomal subunit Either of the two subunits of a ribosome: the ribosomal large subunit or the ribosomal small subunit. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-15T04:47:59Z cellular_component owl:Class GO:0031536 biolink:NamedThing positive regulation of exit from mitosis Any process that activates or increases the rate of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity). tmpzr1t_l9r_go_relaxed.owl stimulation of exit from mitosis|up regulation of exit from mitosis|activation of exit from mitosis|up-regulation of exit from mitosis|upregulation of exit from mitosis biological_process owl:Class GO:1901992 biolink:NamedThing positive regulation of mitotic cell cycle phase transition Any process that activates or increases the frequency, rate or extent of mitotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl upregulation of mitotic cell cycle phase transition|up-regulation of mitotic cell cycle phase transition|up regulation of mitotic cell cycle phase transition|activation of mitotic cell cycle phase transition jl 2013-03-19T16:14:51Z biological_process owl:Class GO:1901133 biolink:NamedThing kanamycin biosynthetic process The chemical reactions and pathways resulting in the formation of kanamycin. tmpzr1t_l9r_go_relaxed.owl kanamycin biosynthesis|kanamycin formation|kanamycin anabolism|kanamycin synthesis yaf 2012-07-11T03:27:32Z biological_process owl:Class GO:0003355 biolink:NamedThing cilium movement involved in otolith formation The directed, self-propelled movement of cilia of inner ear epithelial cells, resulting the aggregation of otolith seed particles. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-03T10:21:08Z biological_process owl:Class GO:0050519 biolink:NamedThing holo-citrate lyase synthase activity Catalysis of the reaction: apo-citrate lyase + 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA = diphosphate + holo-citrate lyase. tmpzr1t_l9r_go_relaxed.owl holo-ACP synthase activity|2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase activity|CitX|2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase adenylyltransferase activity|2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase activity EC:2.7.7.61|MetaCyc:2.7.7.61-RXN|RHEA:16333 molecular_function owl:Class GO:0035679 biolink:NamedThing anterior lateral line neuromast hair cell morphogenesis The change in form (cell shape and size) that occurs when an anterior lateral line neuromast hair cell progresses from its initial formation to its mature state. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:06:54Z biological_process owl:Class GO:0042984 biolink:NamedThing regulation of amyloid precursor protein biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta. tmpzr1t_l9r_go_relaxed.owl regulation of amyloid precursor protein anabolism|regulation of APP biosynthesis|regulation of amyloid precursor protein synthesis|regulation of amyloid precursor protein formation|regulation of amyloid precursor protein biosynthesis|regulation of APP biosynthetic process biological_process owl:Class GO:0051618 biolink:NamedThing positive regulation of histamine uptake Any process that activates or increases the frequency, rate or extent of the directed movement of histamine into a cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of histamine uptake|stimulation of histamine uptake|up regulation of histamine uptake|activation of histamine uptake|upregulation of histamine uptake|positive regulation of histamine import biological_process owl:Class GO:0002325 biolink:NamedThing natural killer cell differentiation involved in immune response The process in which a naive natural killer cell acquires the specialized features of an effector natural killer T cell as part of an immune response. tmpzr1t_l9r_go_relaxed.owl natural killer cell development involved in immune response|natural killer cell differentiation during immune response|NK cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0001779 biolink:NamedThing natural killer cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a natural killer cell. tmpzr1t_l9r_go_relaxed.owl natural killer cell development|NK cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002921 biolink:NamedThing negative regulation of humoral immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of a humoral immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of humoral immune response|downregulation of humoral immune response|down regulation of humoral immune response|down-regulation of humoral immune response biological_process owl:Class GO:0008490 biolink:NamedThing arsenite secondary active transmembrane transporter activity Enables the transfer of arsenite from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl arsenite porter activity GO:0008491 molecular_function owl:Class GO:0001888 biolink:NamedThing glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl-proteoglycan = UDP + alpha-N-acetyl-D-glucosaminyl-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl-proteoglycan. tmpzr1t_l9r_go_relaxed.owl glucuronosylgalactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl-proteoglycan 4IV-alpha-N-acetyl-D-glucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan 4IV-alpha-N-acetyl-D-glucosaminyltransferase activity|alpha1,4-N-acetylglucosaminyltransferase activity|alpha-1,4-N-acetylglucosaminyltransferase activity|alpha-N-acetylglucosaminyltransferase I activity EC:2.4.1.223|RHEA:16221|MetaCyc:2.4.1.223-RXN molecular_function owl:Class GO:0031643 biolink:NamedThing positive regulation of myelination Any process that activates or increases the frequency, rate or extent of the formation of a myelin sheath around nerve axons. tmpzr1t_l9r_go_relaxed.owl up regulation of myelination|up-regulation of myelination|activation of myelination|upregulation of myelination|stimulation of myelination biological_process owl:Class GO:0030204 biolink:NamedThing chondroitin sulfate metabolic process The chemical reactions and pathways involving chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. They usually occur linked to a protein to form proteoglycans. Two subgroups exist, one in which the sulfate is on the 4-position (chondroitin sulfate A) and the second in which it is in the 6-position (chondroitin sulfate C). They often are polydisperse and often differ in the degree of sulfation from tissue to tissue. The chains of repeating disaccharide are covalently linked to the side chains of serine residues in the polypeptide backbone of a protein by a glycosidic attachment through the trisaccharide unit galactosyl-galactosyl-xylosyl. Chondroitin sulfate B is more usually known as dermatan sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate metabolism|chondroitin sulphate metabolic process|chondroitin sulfate metabolism biological_process owl:Class GO:0060202 biolink:NamedThing clathrin-sculpted acetylcholine transport vesicle lumen The volume enclosed by the membrane of the clathrin-sculpted acetylcholine transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted acetylcholine transport vesicle lumen|clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle lumen cellular_component owl:Class GO:1904894 biolink:NamedThing positive regulation of receptor signaling pathway via STAT Any process that activates or increases the frequency, rate or extent of receptor signaling pathway via STAT. tmpzr1t_l9r_go_relaxed.owl up regulation of STAT cascade|upregulation of kinase activated-STAT cascade|up regulation of kinase activated-STAT cascade|positive regulation of STAT signalling pathway|positive regulation of kinase activated-STAT cascade|up regulation of STAT signalling pathway|activation of kinase-STAT cascade|activation of kinase activated-STAT cascade|upregulation of kinase-STAT cascade|up-regulation of kinase-STAT cascade|up-regulation of STAT cascade|up-regulation of kinase activated-STAT cascade|upregulation of STAT cascade|up regulation of kinase-STAT cascade|upregulation of STAT signalling pathway|positive regulation of kinase-STAT cascade|activation of STAT signalling pathway|up-regulation of STAT signalling pathway|activation of STAT cascade pr 2016-01-08T08:14:48Z biological_process owl:Class GO:0051429 biolink:NamedThing corticotropin-releasing hormone receptor binding Binding to a receptor for corticotropin-releasing hormone (CRH), a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland. tmpzr1t_l9r_go_relaxed.owl corticotropin releasing factor receptor ligand|CRH receptor binding|corticotropin-releasing factor receptor binding|CRHR binding|CRF receptor binding|corticotropin releasing factor receptor binding GO:0031742 molecular_function owl:Class GO:1902090 biolink:NamedThing regulation of fumagillin biosynthetic process Any process that modulates the frequency, rate or extent of fumagillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of fumagillin biosynthesis|regulation of fumagillin anabolism|regulation of fumagillin synthesis|regulation of fumagillin formation di 2013-04-27T03:44:59Z biological_process owl:Class GO:0031708 biolink:NamedThing endothelin B receptor binding Binding to an endothelin B receptor. tmpzr1t_l9r_go_relaxed.owl endothelin B receptor ligand molecular_function owl:Class GO:0031705 biolink:NamedThing bombesin receptor binding Binding to a bombesin receptor. tmpzr1t_l9r_go_relaxed.owl bombesin receptor ligand molecular_function owl:Class GO:1990591 biolink:NamedThing asparagine transmembrane import into vacuole The directed movement of asparagine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-15T16:33:46Z biological_process owl:Class GO:0052900 biolink:NamedThing spermine oxidase (propane-1,3-diamine-forming) activity Catalysis of the reaction: H(2)O + O(2) + spermine = 1,3-diaminopropane + H(2)O(2) + N-(3-aminopropyl)-4-aminobutanal. tmpzr1t_l9r_go_relaxed.owl polyamine oxidase (propane-1,3-diamine-forming) activity RHEA:25824|EC:1.5.3.14|MetaCyc:RXN-6421 molecular_function owl:Class GO:0002437 biolink:NamedThing inflammatory response to antigenic stimulus An inflammatory response to an antigenic stimulus, which can be include any number of T cell or B cell epitopes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904807 biolink:NamedThing negative regulation of protein oxidation Any process that stops, prevents or reduces the frequency, rate or extent of protein oxidation. tmpzr1t_l9r_go_relaxed.owl down regulation of protein oxidation|down-regulation of protein amino acid oxidation|inhibition of protein amino acid oxidation|inhibition of protein oxidation|downregulation of protein amino acid oxidation|negative regulation of protein amino acid oxidation|downregulation of protein oxidation|down regulation of protein amino acid oxidation|down-regulation of protein oxidation mec 2015-11-10T14:06:08Z biological_process owl:Class GO:1904806 biolink:NamedThing regulation of protein oxidation Any process that modulates the frequency, rate or extent of protein oxidation. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid oxidation mec 2015-11-10T14:06:00Z biological_process owl:Class GO:0010312 biolink:NamedThing detoxification of zinc ion Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000276 biolink:NamedThing negative regulation of oxidative phosphorylation uncoupler activity Any process that stops, prevents or reduces the frequency, rate or extent of oxidative phosphorylation uncoupler activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of uncoupling protein activity|negative regulation of mitochondrial uncoupling protein activity mah 2010-12-07T12:14:59Z biological_process owl:Class GO:0031555 biolink:NamedThing transcriptional attenuation Regulation of transcription through variation in where transcription termination occurs. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Attenuator_(genetics) biological_process owl:Class GO:0035219 biolink:NamedThing prothoracic disc development Progression of the prothoracic disc over time, from its initial formation through to its metamorphosis to form the adult humerous and anterior spiracle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905156 biolink:NamedThing negative regulation of photosynthesis Any process that stops, prevents or reduces the frequency, rate or extent of photosynthesis. tmpzr1t_l9r_go_relaxed.owl down regulation of photosynthesis|inhibition of photosynthesis|downregulation of photosynthesis|down-regulation of photosynthesis tb 2016-04-19T16:12:29Z biological_process owl:Class GO:1904640 biolink:NamedThing response to methionine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methionine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T17:23:56Z biological_process owl:Class GO:0032226 biolink:NamedThing positive regulation of synaptic transmission, dopaminergic Any process that activates, maintains or increases the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine. tmpzr1t_l9r_go_relaxed.owl stimulation of synaptic transmission, dopaminergic|up regulation of synaptic transmission, dopaminergic|upregulation of synaptic transmission, dopaminergic|activation of synaptic transmission, dopaminergic|up-regulation of synaptic transmission, dopaminergic biological_process owl:Class GO:0006236 biolink:NamedThing cytidine salvage Any process that generates cytidine, cytosine riboside, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043097 biolink:NamedThing pyrimidine nucleoside salvage Any process that generates a pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose, from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001138 biolink:NamedThing regulation of phospholipid transport Any process that modulates the frequency, rate or extent of phospholipid transport. tmpzr1t_l9r_go_relaxed.owl kmv 2011-10-14T06:16:06Z biological_process owl:Class GO:0016263 biolink:NamedThing glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity Catalysis of the addition of a galactosyl residue to a non-reducing O-linked N-acetylgalactosamine residue in an O-glycan. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:glycoprotein-N-acetyl-D-galactosamine 3-beta-D-galactosyltransferase activity|Core 1 GalT|uridine diphosphogalactose-mucin beta-(1->3)-galactosyltransferase activity|UDPgalactose:glycoprotein-N-acetyl-D-galactosamine 3-beta-D-galactosyltransferase activity EC:2.4.1.122|Reactome:R-HSA-6785524|MetaCyc:2.4.1.122-RXN|RHEA:15621|Reactome:R-HSA-1964505 molecular_function owl:Class GO:0006065 biolink:NamedThing UDP-glucuronate biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronate formation|UDP-glucuronate synthesis|UDP-glucuronate biosynthesis|UDP-glucuronate anabolism MetaCyc:PWY-4841 biological_process owl:Class GO:0071062 biolink:NamedThing alphav-beta3 integrin-vitronectin complex A protein complex that consists of an alphav-beta3 integrin complex bound to vitronectin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-VTN complex mah 2009-11-03T04:02:57Z cellular_component owl:Class GO:0004413 biolink:NamedThing homoserine kinase activity Catalysis of the reaction: L-homoserine + ATP = O-phospho-L-homoserine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl homoserine kinase (phosphorylating)|HSK|ATP:L-homoserine O-phosphotransferase activity MetaCyc:HOMOSERKIN-RXN|RHEA:13985|EC:2.7.1.39|KEGG_REACTION:R01771 molecular_function owl:Class GO:0032504 biolink:NamedThing multicellular organism reproduction The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051545 biolink:NamedThing negative regulation of elastin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin. tmpzr1t_l9r_go_relaxed.owl down-regulation of elastin biosynthetic process|downregulation of elastin biosynthetic process|down regulation of elastin biosynthetic process|inhibition of elastin biosynthetic process biological_process owl:Class GO:0098717 biolink:NamedThing pantothenate import across plasma membrane The directed movement of pantothenate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pantothenate import|pantothenate import into cell jl 2012-12-06T13:02:23Z GO:0044755|GO:1901688 biological_process owl:Class GO:0031727 biolink:NamedThing CCR2 chemokine receptor binding Binding to a CCR2 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl monocyte chemoattractant protein 1 receptor binding|CCR2 chemokine receptor ligand molecular_function owl:Class GO:0048020 biolink:NamedThing CCR chemokine receptor binding Binding to a CCR chemokine receptor. tmpzr1t_l9r_go_relaxed.owl beta chemokine receptor ligand|beta chemokine receptor binding|CCR chemokine receptor ligand molecular_function owl:Class GO:0047031 biolink:NamedThing diethyl 2-methyl-3-oxosuccinate reductase activity Catalysis of the reaction: diethyl (2R,3R)-2-methyl-3-hydroxysuccinate + NADP(+) = diethyl 2-methyl-3-oxosuccinate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl diethyl-(2R,3R)-2-methyl-3-hydroxysuccinate:NADP+ 3-oxidoreductase activity KEGG_REACTION:R04387|EC:1.1.1.229|MetaCyc:1.1.1.229-RXN|RHEA:21008 molecular_function owl:Class GO:0102676 biolink:NamedThing avenasterol-desaturase activity Catalysis of the reaction: avenasterol + O2 + NADPH + H+ <=> 5-dehydroavenasterol + 2 H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4209 molecular_function owl:Class GO:2001222 biolink:NamedThing regulation of neuron migration Any process that modulates the frequency, rate or extent of neuron migration. tmpzr1t_l9r_go_relaxed.owl regulation of neuron guidance|regulation of neuron chemotaxis|regulation of neuronal migration kmv 2011-11-17T10:01:38Z biological_process owl:Class GO:0099611 biolink:NamedThing regulation of action potential firing threshold Any process that regulates the potential at which an axon potential is triggered. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046029 biolink:NamedThing mannitol dehydrogenase activity Catalysis of the reaction: D-mannitol + NAD(+) = D-mannose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl MTD activity|mannitol:NAD+ 1-oxidoreductase activity|NAD-dependent mannitol dehydrogenase activity RHEA:15029|EC:1.1.1.255|KEGG_REACTION:R07135|MetaCyc:1.1.1.255-RXN molecular_function owl:Class GO:0033102 biolink:NamedThing acidocalcisome membrane The lipid bilayer surrounding an acidocalcisome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070909 biolink:NamedThing glutamate:gamma-aminobutyric acid antiporter activity Catalysis of the reaction: glutamate(out) + gamma-aminobutyric acid(in) = glutamate(in) + gamma-aminobutyric acid(out). tmpzr1t_l9r_go_relaxed.owl glutamate-gamma-aminobutyric acid antiporter activity|glutamate: GABA antiporter activity|glutamate/gamma-aminobutyric acid antiporter activity mah 2009-09-04T03:51:32Z molecular_function owl:Class GO:0045797 biolink:NamedThing positive regulation of intestinal cholesterol absorption Any process that activates or increases the frequency, rate or extent of uptake of cholesterol into the blood by absorption from the intestine. tmpzr1t_l9r_go_relaxed.owl up regulation of cholesterol absorption|activation of cholesterol absorption|upregulation of cholesterol absorption|up-regulation of cholesterol absorption|stimulation of cholesterol absorption biological_process owl:Class GO:0032376 biolink:NamedThing positive regulation of cholesterol transport Any process that activates or increases the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl activation of cholesterol transport|up regulation of cholesterol transport|stimulation of cholesterol transport|upregulation of cholesterol transport|up-regulation of cholesterol transport biological_process owl:Class GO:0021644 biolink:NamedThing vagus nerve morphogenesis The process in which the anatomical structure of the vagus nerve is generated and organized. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis. tmpzr1t_l9r_go_relaxed.owl CN X morphogenesis biological_process owl:Class GO:0033315 biolink:NamedThing meiotic G2/MI DNA replication checkpoint signaling A signal transduction process that controls the G2/M1 transition of the meiotic cell cycle and prevents the initiation of nuclear division until DNA replication is complete. tmpzr1t_l9r_go_relaxed.owl meiotic cell cycle DNA replication checkpoint|meiotic G2/MI DNA replication checkpoint|signal transduction involved in meiotic DNA replication checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072440 biological_process owl:Class GO:0044778 biolink:NamedThing meiotic DNA integrity checkpoint signaling A signal transduction process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA during meiosis. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and ends with signal transduction. tmpzr1t_l9r_go_relaxed.owl meiotic DNA integrity checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2013-03-20T16:46:06Z biological_process owl:Class GO:0140076 biolink:NamedThing negative regulation of lipoprotein transport Any process that stops, prevents or reduces the frequency, rate or extent of lipoprotein transport. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-21T15:39:50Z biological_process owl:Class GO:0140075 biolink:NamedThing regulation of lipoprotein transport Any process that controls lipoprotein transport. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-21T15:35:47Z biological_process owl:Class GO:1902821 biolink:NamedThing 1-undecene biosynthetic process The chemical reactions and pathways resulting in the formation of 1-undecene. tmpzr1t_l9r_go_relaxed.owl 1-undecene biosynthesis|1-undecene synthesis|1-undecene formation|1-undecene anabolism tt 2014-03-31T02:51:19Z biological_process owl:Class GO:0099624 biolink:NamedThing atrial cardiac muscle cell membrane repolarization The process in which ions are transported across the plasma membrane of an atrial cardiac muscle cell such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102035 biolink:NamedThing isobutyryl-CoA:FAD oxidoreductase activity Catalysis of the reaction: H+ + isobutyryl-CoA + FAD <=> methacrylyl-CoA + FADH2. tmpzr1t_l9r_go_relaxed.owl MetaCyc:MEPROPCOA-FAD-RXN|EC:1.3.8.5 molecular_function owl:Class GO:0033060 biolink:NamedThing ocellus pigmentation The deposition or aggregation of coloring matter in an ocellus, a minute simple eye found in many invertebrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001618 biolink:NamedThing virus receptor activity Combining with a virus component and mediating entry of the virus into the cell. tmpzr1t_l9r_go_relaxed.owl viral receptor activity molecular_function owl:Class GO:0140272 biolink:NamedThing exogenous protein binding Binding to a protein or protein complex from a different species, for example a pathogen molecule binding to a host protein. tmpzr1t_l9r_go_relaxed.owl Note that as GO captures normal processes, it may be that exogenous proteins interactions are normal for one of the participating species but not the other. Therefore reciprocal annotations should not be made without confirming that it is physiological relevant. pg 2018-10-01T10:03:21Z molecular_function owl:Class GO:0045761 biolink:NamedThing regulation of adenylate cyclase activity Any process that modulates the frequency, rate or extent of adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl regulation of adenylyl cyclase activity|adenylate cyclase regulator biological_process owl:Class GO:0051339 biolink:NamedThing regulation of lyase activity Any process that modulates the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. tmpzr1t_l9r_go_relaxed.owl lyase regulator biological_process owl:Class GO:0110079 biolink:NamedThing regulation of placenta blood vessel development Any process that modulates the frequency, rate or extent of placenta blood vessel development. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T14:49:12Z biological_process owl:Class GO:0050172 biolink:NamedThing phenylalanine 2-monooxygenase activity Catalysis of the reaction: L-phenylalanine + O(2) = 2-phenylacetamide + CO(2) + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine:oxygen 2-oxidoreductase (decarboxylating)|phenylalanine (deaminating, decarboxylating)oxidase activity|phenylalanine (deaminating, decarboxylating) oxidase activity|L-phenylalanine oxidase (deaminating and decarboxylating)|l-phenylalanine oxidase (deaminating and decarboxylating) activity KEGG_REACTION:R00690|EC:1.13.12.9|MetaCyc:PHENYLALANINE-2-MONOOXYGENASE-RXN|RHEA:10712 molecular_function owl:Class GO:1905663 biolink:NamedThing positive regulation of telomerase RNA reverse transcriptase activity Any process that activates or increases the frequency, rate or extent of telomerase RNA reverse transcriptase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of telomerase, catalyst|upregulation of telomerase RNA reverse transcriptase activity|up regulation of telomerase, catalyst|activation of telomerase RNA reverse transcriptase activity|positive regulation of telomerase, catalyst|up regulation of telomerase RNA reverse transcriptase activity|activation of telomerase, catalyst|up-regulation of telomerase, catalyst|up-regulation of telomerase RNA reverse transcriptase activity nc 2016-11-09T16:55:35Z biological_process owl:Class GO:1905638 biolink:NamedThing negative regulation of mitochondrial mRNA catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial mRNA catabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of mitochondrial mRNA catabolic process|down-regulation of mitochondrial mRNA catabolic process|down regulation of mitochondrial mRNA catabolic process|inhibition of mitochondrial mRNA catabolic process tb 2016-11-03T20:24:05Z biological_process owl:Class GO:0048019 biolink:NamedThing receptor antagonist activity The activity of a gene product that interacts with a receptor to decrease the ability of the receptor agonist to bind and activate the receptor. tmpzr1t_l9r_go_relaxed.owl receptor ligand activity molecular_function owl:Class GO:0009403 biolink:NamedThing toxin biosynthetic process The chemical reactions and pathways resulting in the formation of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. tmpzr1t_l9r_go_relaxed.owl toxin anabolism|toxin synthesis|toxin formation|toxin biosynthesis biological_process owl:Class GO:1901640 biolink:NamedThing XTP binding Binding to XTP. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-15T22:56:35Z molecular_function owl:Class GO:0102057 biolink:NamedThing jasmonoyl-valine synthetase activity Catalysis of the reaction: L-valine + ATP(4-) + a jasmonic acid <=> AMP(2-) + diphosphoric acid + a jasmonoyl-valine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10457|EC:6.3.2.52|RHEA:55772 molecular_function owl:Class GO:1901968 biolink:NamedThing regulation of polynucleotide 3'-phosphatase activity Any process that modulates the frequency, rate or extent of polynucleotide 3'-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation of 5'-polynucleotidekinase 3'-phosphatase activity|regulation of 2'(3')-polynucleotidase activity|regulation of deoxyribonucleate 3'-phosphatase activity|regulation of DNA 3'-phosphatase activity|regulation of polynucleotide 3'-phosphohydrolase activity tb 2013-02-22T00:58:17Z biological_process owl:Class GO:0032346 biolink:NamedThing positive regulation of aldosterone metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving aldosterone. tmpzr1t_l9r_go_relaxed.owl upregulation of aldosterone metabolic process|stimulation of aldosterone metabolic process|up regulation of aldosterone metabolic process|activation of aldosterone metabolic process|positive regulation of aldosterone metabolism|up-regulation of aldosterone metabolic process biological_process owl:Class GO:0007178 biolink:NamedThing transmembrane receptor protein serine/threonine kinase signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein serine/threonine kinase signalling pathway biological_process owl:Class GO:1900904 biolink:NamedThing positive regulation of hexadecanal biosynthetic process Any process that activates or increases the frequency, rate or extent of hexadecanal biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of hexadecanal biosynthetic process|activation of hexadecanal anabolism|positive regulation of palmitaldehyde biosynthesis|upregulation of hexadecanal anabolism|activation of hexadecanal synthesis|upregulation of hexadecanal biosynthesis|upregulation of hexadecanal biosynthetic process|activation of palmitaldehyde biosynthetic process|activation of hexadecanal biosynthesis|up-regulation of palmitaldehyde biosynthesis|positive regulation of palmitaldehyde biosynthetic process|up-regulation of hexadecanal formation|upregulation of hexadecanal synthesis|activation of palmitaldehyde biosynthesis|activation of hexadecanal formation|positive regulation of hexadecanal synthesis|up-regulation of hexadecanal biosynthesis|activation of hexadecanal biosynthetic process|up-regulation of hexadecanal anabolism|up-regulation of hexadecanal synthesis|up regulation of hexadecanal synthesis|up regulation of hexadecanal formation|positive regulation of hexadecanal formation|upregulation of palmitaldehyde biosynthesis|positive regulation of hexadecanal anabolism|up-regulation of palmitaldehyde biosynthetic process|upregulation of palmitaldehyde biosynthetic process|positive regulation of hexadecanal biosynthesis|upregulation of hexadecanal formation|up regulation of palmitaldehyde biosynthetic process|up regulation of hexadecanal biosynthetic process|up regulation of hexadecanal anabolism|up regulation of hexadecanal biosynthesis|up regulation of palmitaldehyde biosynthesis tt 2012-06-13T03:33:42Z biological_process owl:Class GO:1900907 biolink:NamedThing positive regulation of hexadecanal metabolic process Any process that activates or increases the frequency, rate or extent of hexadecanal metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of hexadecanal metabolic process|up regulation of hexadecanal metabolic process|up-regulation of hexadecanal metabolism|up regulation of hexadecanal metabolism|upregulation of hexadecanal metabolic process|positive regulation of hexadecanal metabolism|activation of hexadecanal metabolism|upregulation of hexadecanal metabolism|activation of hexadecanal metabolic process tt 2012-06-13T03:36:02Z biological_process owl:Class GO:0033332 biolink:NamedThing ent-kaurene biosynthetic process The chemical reactions and pathways resulting in the formation of ent-kaurene. Ent-kaurene is a tetracyclic diterpenoid that is a precursor of several plant isoprenoids, including gibberellins. tmpzr1t_l9r_go_relaxed.owl ent-kaurene synthesis|ent-kaurene anabolism|ent-kaurene biosynthesis|ent-kaurene formation MetaCyc:PWY-5035|MetaCyc:PWY-5032 biological_process owl:Class GO:0033331 biolink:NamedThing ent-kaurene metabolic process The chemical reactions and pathways involving ent-kaur-16-ene. Ent-kaurene is a tetracyclic diterpenoid that is a precursor of several plant isoprenoids, including gibberellins. tmpzr1t_l9r_go_relaxed.owl ent-kaurene metabolism biological_process owl:Class GO:0120195 biolink:NamedThing positive regulation of anther dehiscence Any process that activates or increases the frequency, rate or extent of anther dehiscence. tmpzr1t_l9r_go_relaxed.owl krc 2019-04-09T21:58:31Z biological_process owl:Class GO:0030919 biolink:NamedThing peptidyl-serine O-acetylation The acetylation of peptidyl-serine to form peptidyl-O-acetyl-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0364 biological_process owl:Class GO:0036253 biolink:NamedThing response to amiloride Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amiloride stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-15T01:05:35Z biological_process owl:Class GO:0042670 biolink:NamedThing retinal cone cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a retinal cone cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035248 biolink:NamedThing alpha-1,4-N-acetylgalactosaminyltransferase activity Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming an alpha-1,4 linkage. tmpzr1t_l9r_go_relaxed.owl alpha-1,4-GalNAc transferase activity molecular_function owl:Class GO:1904245 biolink:NamedThing regulation of polynucleotide adenylyltransferase activity Any process that modulates the frequency, rate or extent of polynucleotide adenylyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|regulation of polyadenylate nucleotidyltransferase activity|regulation of AMP polynucleotidylexotransferase activity|regulation of RNA formation factors, PF1|regulation of polyadenylate synthetase activity|regulation of poly(A) synthetase activity|regulation of poly-A polymerase activity|regulation of polyadenylic acid polymerase activity|regulation of RNA adenylating enzyme activity|regulation of terminal riboadenylate transferase activity|regulation of ATP-polynucleotide adenylyltransferase activity|regulation of ATP:polynucleotidylexotransferase activity|regulation of NTP polymerase activity|regulation of ATP:polynucleotide adenylyltransferase activity|regulation of polyadenylic polymerase activity|regulation of poly(A) hydrolase activity|regulation of polyadenylate polymerase activity|regulation of poly(A) polymerase activity kmv 2015-05-19T14:47:20Z biological_process owl:Class GO:0090334 biolink:NamedThing regulation of cell wall (1->3)-beta-D-glucan biosynthetic process Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall 1,3-beta-glucan biosynthetic process|regulation of cell wall 1,3-beta-D-glucan biosynthetic process tb 2010-06-01T03:11:34Z biological_process owl:Class GO:1903338 biolink:NamedThing regulation of cell wall organization or biogenesis Any process that modulates the frequency, rate or extent of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall organization or biogenesis at cellular level|regulation of cellular cell wall organization or biogenesis|regulation of cellular cell wall organisation or biogenesis|regulation of cell wall organisation or biogenesis vw 2014-08-18T13:20:50Z biological_process owl:Class GO:1990884 biolink:NamedThing RNA acetylation The posttranscriptional addition of one or more acetyl groups to specific residues in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2015-10-28T16:28:08Z biological_process owl:Class GO:0031541 biolink:NamedThing negative regulation of anthocyanin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. tmpzr1t_l9r_go_relaxed.owl negative regulation of anthocyanin synthesis|downregulation of anthocyanin biosynthetic process|negative regulation of anthocyanin formation|down regulation of anthocyanin biosynthetic process|negative regulation of anthocyanin biosynthesis|inhibition of anthocyanin biosynthetic process|negative regulation of anthocyanin anabolism|down-regulation of anthocyanin biosynthetic process biological_process owl:Class GO:0098644 biolink:NamedThing complex of collagen trimers A complex of collagen trimers such as a fibril or collagen network. tmpzr1t_l9r_go_relaxed.owl Supramolecular collagen assembly|Supramolecular aggregate of collagen cellular_component owl:Class GO:0039521 biolink:NamedThing suppression by virus of host autophagy Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host autophagy|inhibition of host autophagy by virus|negative regulation by virus of host autophagy VZ:845 bf 2011-06-22T04:30:11Z biological_process owl:Class GO:1990189 biolink:NamedThing peptide-serine-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + N-terminal L-serine in peptide = CoA + N-acetyl-L-serine-peptide. tmpzr1t_l9r_go_relaxed.owl tb 2013-09-11T20:13:40Z molecular_function owl:Class GO:0008176 biolink:NamedThing tRNA (guanine-N7-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N7-methylguanine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA (guanine-N7-)-methyltransferase activity|N7-methylguanine methylase activity|7-methylguanine transfer ribonucleate methylase activity|tRNA guanine 7-methyltransferase activity|transfer ribonucleate guanine 7-methyltransferase activity|S-adenosyl-L-methionine:tRNA (guanine-7-N-)-methyltransferase activity Reactome:R-HSA-6782286|EC:2.1.1.33|MetaCyc:TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|RHEA:42708 molecular_function owl:Class GO:0016423 biolink:NamedThing tRNA (guanine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylguanine. tmpzr1t_l9r_go_relaxed.owl tRNA (guanosine) methyltransferase activity GO:0016424 molecular_function owl:Class GO:2000966 biolink:NamedThing regulation of cell wall polysaccharide catabolic process Any process that modulates the frequency, rate or extent of cell wall polysaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall polysaccharide breakdown tt 2011-08-01T02:30:27Z biological_process owl:Class GO:1902289 biolink:NamedThing negative regulation of defense response to oomycetes Any process that stops, prevents or reduces the frequency, rate or extent of defense response to oomycetes. tmpzr1t_l9r_go_relaxed.owl down-regulation of defense response to oomycetes|downregulation of defense response to oomycetes|down regulation of defense response to oomycetes|inhibition of defense response to oomycetes ms 2013-07-09T13:45:37Z biological_process owl:Class GO:0034789 biolink:NamedThing 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate + H2O = cis-2-hydroxypenta-2,4-dienoate + phthalate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1042 molecular_function owl:Class GO:0033819 biolink:NamedThing lipoyl(octanoyl) transferase activity Catalysis of the reaction: octanoyl-[acyl-carrier protein] + protein = protein N6-(octanoyl)lysine + acyl-carrier protein. tmpzr1t_l9r_go_relaxed.owl lipoate/octanoate transferase activity|LipB|octanoyl-acyl carrier protein-protein N-octanoyltransferase activity|octanoyl-acyl-carrier-protein-protein N-octanoyltransferase activity|lipoyl (octanoyl)-acyl carrier protein:protein transferase activity|lipoyl (octanoyl)-acyl-carrier-protein-protein N-lipoyltransferase activity|octanoyl-acyl-carrier-protein:protein N-octanoyltransferase activity EC:2.3.1.181|Reactome:R-HSA-6793590|MetaCyc:RXN0-947 molecular_function owl:Class GO:1904517 biolink:NamedThing MgATP(2-) binding Binding to MgATP(2-). tmpzr1t_l9r_go_relaxed.owl bhm 2015-07-29T13:40:02Z molecular_function owl:Class GO:1902244 biolink:NamedThing cis-abienol metabolic process The chemical reactions and pathways involving cis-abienol. tmpzr1t_l9r_go_relaxed.owl cis-abienol metabolism ms 2013-06-20T09:09:51Z biological_process owl:Class GO:0001939 biolink:NamedThing female pronucleus The pronucleus originating from the ovum that is being fertilized. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045120 biolink:NamedThing pronucleus The nucleus of either the ovum or the spermatozoon following fertilization. Thus, in the fertilized ovum, there are two pronuclei, one originating from the ovum, the other from the spermatozoon that brought about fertilization; they approach each other, but do not fuse until just before the first cleavage, when each pronucleus loses its membrane to release its contents. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pronucleus cellular_component owl:Class GO:0007509 biolink:NamedThing mesoderm migration involved in gastrulation The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008078 biolink:NamedThing mesodermal cell migration The orderly movement of mesodermal cells from one site to another. tmpzr1t_l9r_go_relaxed.owl mesoderm cell migration biological_process owl:Class GO:0070024 biolink:NamedThing CD19-Vav-PIK3R1 complex A protein complex that contains the cell surface signaling molecule CD19, the Ras guanine nucleotide exchange factor Vav, and the regulatory subunit alpha of phosphatidylinositol 3-kinase (PI3K). tmpzr1t_l9r_go_relaxed.owl CD19-Vav-PI 3-kinase (p85 subunit) complex cellular_component owl:Class GO:0006042 biolink:NamedThing glucosamine biosynthetic process The chemical reactions and pathways resulting in the formation of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin. tmpzr1t_l9r_go_relaxed.owl chitosamine biosynthetic process|glucosamine anabolism|glucosamine synthesis|glucosamine formation|glucosamine biosynthesis|chitosamine biosynthesis biological_process owl:Class GO:0006164 biolink:NamedThing purine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleotide formation|purine nucleotide biosynthesis|purine nucleotide synthesis|purine nucleotide anabolism MetaCyc:DENOVOPURINE2-PWY biological_process owl:Class GO:1905352 biolink:NamedThing ciliary necklace assembly The aggregation, arrangement and bonding together of a set of components to form a ciliary necklace. tmpzr1t_l9r_go_relaxed.owl cilium necklace assembly|ciliary necklace formation|cilial necklace assembly|cilial necklace formation|cilium necklace formation pr 2016-08-05T14:01:23Z biological_process owl:Class GO:0060676 biolink:NamedThing ureteric bud formation The developmental process pertaining to the initial formation of the ureteric bud from the Wolffian duct. This process begins when the bud protrudes from the duct and ends when it is a recognizable bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T01:47:23Z biological_process owl:Class GO:0072172 biolink:NamedThing mesonephric tubule formation The developmental process pertaining to the initial formation of a mesonephric tubule from unspecified parts. A mesonephric tubule is an epithelial tube that is part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:02:37Z biological_process owl:Class GO:0042755 biolink:NamedThing eating behavior The specific behavior of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue. tmpzr1t_l9r_go_relaxed.owl eating behaviour biological_process owl:Class GO:0043477 biolink:NamedThing pigment biosynthetic process involved in pigment accumulation The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, resulting in pigment accumulation. tmpzr1t_l9r_go_relaxed.owl pigment biosynthetic process during pigment accumulation biological_process owl:Class GO:0050173 biolink:NamedThing phenylalanine adenylyltransferase activity Catalysis of the reaction: L-phenylalanine + ATP = N-adenylyl-L-phenylalanine + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:L-phenylalanine adenylyltransferase activity|L-phenylalanine adenylyltransferase activity|ATP:phenylalanine adenylyltransferase activity MetaCyc:PHENYLALANINE-ADENYLYLTRANSFERASE-RXN|RHEA:17189|EC:2.7.7.54|KEGG_REACTION:R00687 molecular_function owl:Class GO:0031281 biolink:NamedThing positive regulation of cyclase activity Any process that activates or increases the activity of a cyclase. tmpzr1t_l9r_go_relaxed.owl upregulation of cyclase activity|up regulation of cyclase activity|activation of cyclase activity|up-regulation of cyclase activity|stimulation of cyclase activity biological_process owl:Class GO:0045915 biolink:NamedThing positive regulation of catecholamine metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catecholamine. tmpzr1t_l9r_go_relaxed.owl up-regulation of catecholamine metabolic process|positive regulation of catecholamine metabolism|activation of catecholamine metabolic process|up regulation of catecholamine metabolic process|upregulation of catecholamine metabolic process|stimulation of catecholamine metabolic process biological_process owl:Class GO:1990212 biolink:NamedThing positive regulation by symbiont of ethylene levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the ethylene levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-09T19:03:10Z biological_process owl:Class GO:0052021 biolink:NamedThing modulation by symbiont of ethylene levels in host The alteration by an organism of the levels of ethylene in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of ethylene levels in other organism involved in symbiotic interaction GO:0052449 biological_process owl:Class GO:0051139 biolink:NamedThing metal ion:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: metal ion(in) + H+(out) = metal ion(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl metal ion:hydrogen antiporter activity Reactome:R-HSA-435171 molecular_function owl:Class GO:0097057 biolink:NamedThing TRAF2-GSTP1 complex A protein complex comprising tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and glutathione S-transferase pi 1 (GSTP1). This complex is thought to disrupt the TNF signaling cascade, thus down-regulating inflammatory responses. tmpzr1t_l9r_go_relaxed.owl pr 2011-05-26T10:35:45Z cellular_component owl:Class GO:0060823 biolink:NamedThing canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the formation of the neural plate anterior/posterior pattern. tmpzr1t_l9r_go_relaxed.owl canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation|canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:22:42Z biological_process owl:Class GO:0072570 biolink:NamedThing ADP-D-ribose binding Binding to ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment. tmpzr1t_l9r_go_relaxed.owl ADP-ribose binding mah 2011-01-31T02:37:30Z molecular_function owl:Class GO:0045585 biolink:NamedThing positive regulation of cytotoxic T cell differentiation Any process that activates or increases the frequency, rate or extent of cytotoxic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of cytotoxic T cell differentiation|positive regulation of cytotoxic T-lymphocyte differentiation|positive regulation of cytotoxic T lymphocyte differentiation|stimulation of cytotoxic T cell differentiation|upregulation of cytotoxic T cell differentiation|positive regulation of cytotoxic T-cell differentiation|positive regulation of cytotoxic T cell development|up regulation of cytotoxic T cell differentiation|up-regulation of cytotoxic T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0043421 biolink:NamedThing anthranilate catabolic process The chemical reactions and pathways resulting in the breakdown of anthranilate (2-aminobenzoate). tmpzr1t_l9r_go_relaxed.owl 2-aminobenzoate catabolism|ortho-aminobenzoic acid catabolic process|anthranilate breakdown|2-aminobenzoate breakdown|anthranilate degradation|2-aminobenzoate degradation|anthranilate catabolism|2-aminobenzoate catabolic process|anthranilic acid catabolism|ortho-aminobenzoic acid catabolism|anthranilic acid catabolic process MetaCyc:2AMINOBENZDEG-PWY GO:0019259 biological_process owl:Class GO:0047809 biolink:NamedThing D-2-hydroxy-acid dehydrogenase activity Catalysis of the reaction: (R)-lactate + A = AH(2) + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy acid dehydrogenase activity|(R)-2-hydroxy-acid:(acceptor) 2-oxidoreductase activity RHEA:15089|EC:1.1.99.6|MetaCyc:D-2-HYDROXY-ACID-DEHYDROGENASE-RXN|KEGG_REACTION:R00297 molecular_function owl:Class GO:0050167 biolink:NamedThing pantothenoylcysteine decarboxylase activity Catalysis of the reaction: N-[(R)-pantothenoyl]-L-cysteine + H(+) = (R)-pantetheine + CO(2). tmpzr1t_l9r_go_relaxed.owl N-((R)-pantothenoyl)-L-cysteine carboxy-lyase activity|N-[(R)-pantothenoyl]-L-cysteine carboxy-lyase (pantetheine-forming)|pantothenylcysteine decarboxylase activity|N-[(R)-pantothenoyl]-L-cysteine carboxy-lyase activity RHEA:15077|KEGG_REACTION:R02972|MetaCyc:PANTOTHENOYLCYSTEINE-DECARBOXYLASE-RXN|EC:4.1.1.30 molecular_function owl:Class GO:0072060 biolink:NamedThing outer medullary collecting duct development The process whose specific outcome is the progression of the outer medullary collecting duct over time, from its formation to the mature structure. The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:08:18Z biological_process owl:Class GO:1904887 biolink:NamedThing Wnt signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a Wnt signalosome. tmpzr1t_l9r_go_relaxed.owl Wnt signalosome complex formation|Wnt signalosome complex assembly|Wnt-LRP5/6 signalosome formation|LRP6 signalosome formation|LRP5/6 signalosome assembly|LRP5/6 signalosome formation|Wnt-LRP5/6 signalosome assembly|LRP6 signalosome assembly|Wnt signalosome formation bf 2016-01-05T15:34:36Z biological_process owl:Class GO:0043761 biolink:NamedThing archaetidylserine synthase activity Catalysis of the reaction: CDP-digeranylgeranylglycerol + L-serine = archaetidylserine + CMP. tmpzr1t_l9r_go_relaxed.owl CDP-2,3-di-O-geranylgeranyl-sn-glycerol inositol 1-archaetidyltransferase activity|CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase activity EC:2.7.8.38 molecular_function owl:Class GO:0005872 biolink:NamedThing minus-end kinesin complex Any complex that includes a dimer of molecules from the kinesin superfamily and any associated proteins, and moves towards the minus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005871 biolink:NamedThing kinesin complex Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051591 biolink:NamedThing response to cAMP Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus. tmpzr1t_l9r_go_relaxed.owl response to adenosine 3',5'-cyclophosphate|response to 3',5'-cAMP|response to cyclic AMP|response to 3',5' cAMP biological_process owl:Class GO:0050945 biolink:NamedThing positive regulation of iridophore differentiation Any process that activates or increases the frequency, rate or extent of iridophore differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of iridophore differentiation|stimulation of iridophore differentiation|up-regulation of iridophore differentiation|up regulation of iridophore differentiation|activation of iridophore differentiation biological_process owl:Class GO:0034174 biolink:NamedThing toll-like receptor 12 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 12. tmpzr1t_l9r_go_relaxed.owl TLR12 signaling pathway|toll-like receptor 12 signalling pathway biological_process owl:Class GO:0070421 biolink:NamedThing DNA ligase III-XRCC1 complex A protein complex that contains DNA ligase III and XRCC1, and is involved in base excision repair. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010965 biolink:NamedThing regulation of mitotic sister chromatid separation Any process that modulates the frequency, rate or extent of mitotic sister chromatid separation. Mitotic sister chromatid separation is the process in which sister chromatids are physically detached from each other during mitosis. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-20T11:39:07Z biological_process owl:Class GO:0016475 biolink:NamedThing detection of nuclear:cytoplasmic ratio The process in which the size of the nucleus with respect to its cytoplasm is sensed by a cell. tmpzr1t_l9r_go_relaxed.owl interpretation of nuclear:cytoplasmic ratio|sensing of nuclear:cytoplasmic ratio biological_process owl:Class GO:0009726 biolink:NamedThing detection of endogenous stimulus The series of events in which an endogenous stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of endogenous stimulus biological_process owl:Class GO:0002562 biolink:NamedThing somatic diversification of immune receptors via germline recombination within a single locus The process in which immune receptor genes are diversified through recombination of the germline genetic elements within a single genetic locus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060468 biolink:NamedThing prevention of polyspermy The negative regulation of fertilization process that takes place as part of egg activation, ensuring that only a single sperm fertilizes the egg. tmpzr1t_l9r_go_relaxed.owl negative regulation of fertilization involved in egg activation|polyspermy block biological_process owl:Class GO:0060467 biolink:NamedThing negative regulation of fertilization Any process that decreases the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019083 biolink:NamedThing viral transcription The process by which a viral genome, or part of a viral genome, is transcribed within the host cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015837 biolink:NamedThing amine transport The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl amine/polyamine transport biological_process owl:Class GO:1900977 biolink:NamedThing regulation of tatiopterin metabolic process Any process that modulates the frequency, rate or extent of tatiopterin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of tatiopterin metabolism tt 2012-06-14T04:03:06Z biological_process owl:Class GO:0102991 biolink:NamedThing myristoyl-CoA hydrolase activity Catalysis of the reaction: myristoyl-CoA + H2O <=> H+ + tetradecanoate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl EC:3.1.2.2|RHEA:40119|MetaCyc:RXN-9626 molecular_function owl:Class GO:0110166 biolink:NamedThing DNA synthesis involved in mitochondrial DNA replication Any DNA biosynthetic process that is involved in mitochondrial DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA biosynthetic process involved in mitochondrial DNA replication https://github.com/geneontology/go-ontology/issues/17716 kmv 2020-03-18T13:30:39Z biological_process owl:Class GO:0047534 biolink:NamedThing 2-acetolactate mutase activity Catalysis of the reaction: 2-acetolactate = 3-hydroxy-3-methyl-2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl acetohydroxy acid isomerase activity|acetolactate mutase activity|2-acetolactate methylmutase activity RHEA:16361|EC:5.4.99.3|MetaCyc:2-ACETOLACTATE-MUTASE-RXN molecular_function owl:Class GO:0060820 biolink:NamedThing inactivation of X chromosome by heterochromatin assembly Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by the mechanism of heterochromatin formation. tmpzr1t_l9r_go_relaxed.owl inactivation of X chromosome by heterochromatin formation dph 2009-08-11T10:58:06Z biological_process owl:Class GO:1902221 biolink:NamedThing erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process The chemical reactions and pathways involving erythrose 4-phosphate/phosphoenolpyruvate family amino acid. tmpzr1t_l9r_go_relaxed.owl erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolism pr 2013-06-13T10:37:38Z biological_process owl:Class GO:2000589 biolink:NamedThing regulation of metanephric mesenchymal cell migration Any process that modulates the frequency, rate or extent of metanephric mesenchymal cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of metanephric mesenchyme chemotaxis bf 2011-04-07T03:29:43Z biological_process owl:Class GO:0006036 biolink:NamedThing cuticle chitin catabolic process The chemical reactions and pathways resulting in the breakdown of cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles. tmpzr1t_l9r_go_relaxed.owl cuticle chitin degradation|cuticle chitin breakdown|cuticle chitin catabolism biological_process owl:Class GO:0006034 biolink:NamedThing cuticle chitin metabolic process The chemical reactions and pathways involving cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles. tmpzr1t_l9r_go_relaxed.owl cuticle chitin metabolism biological_process owl:Class GO:0055118 biolink:NamedThing negative regulation of cardiac muscle contraction Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018561 biolink:NamedThing 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase activity Catalysis of the reaction: 2'-aminobiphenyl-2,3-diol + O2 = H+ + 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0457 molecular_function owl:Class GO:0097465 biolink:NamedThing somatic spine Spine emanating from the cell soma of a neuron. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao2048514053 pr 2012-12-21T08:02:37Z cellular_component owl:Class GO:0120306 biolink:NamedThing cellular response to actin cytoskeletal stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of perturbations or damage to the actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl cellular response to latrunculin A|cellular response to actin cytoskeleton stress|cellular response to latrunculin B|response to latrunculin B|response to latrunculin A https://github.com/geneontology/go-ontology/issues/20189 krc 2021-02-12T21:44:37Z GO:1903956|GO:1904805|GO:1904804|GO:1903957 biological_process owl:Class GO:0014827 biolink:NamedThing intestine smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the intestine. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The intestine is the section of the alimentary canal from the stomach to the anal canal. It includes the large intestine and small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010812 biolink:NamedThing negative regulation of cell-substrate adhesion Any process that decreases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019107 biolink:NamedThing myristoyltransferase activity Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-162914|Reactome:R-HSA-141367 molecular_function owl:Class GO:0043537 biolink:NamedThing negative regulation of blood vessel endothelial cell migration Any process that stops, prevents, or reduces the frequency, rate or extent of the migration of the endothelial cells of blood vessels. tmpzr1t_l9r_go_relaxed.owl down regulation of blood vessel endothelial cell migration|downregulation of blood vessel endothelial cell migration|inhibition of blood vessel endothelial cell migration|down-regulation of blood vessel endothelial cell migration biological_process owl:Class GO:0010596 biolink:NamedThing negative regulation of endothelial cell migration Any process that decreases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900359 biolink:NamedThing positive regulation of nigerotriose transport Any process that activates or increases the frequency, rate or extent of nigerotriose transport. tmpzr1t_l9r_go_relaxed.owl upregulation of nigerotriose transport|activation of nigerotriose transport|up-regulation of nigerotriose transport|up regulation of nigerotriose transport tt 2012-04-06T02:18:29Z biological_process owl:Class GO:0021845 biolink:NamedThing neurotransmitter-mediated guidance of interneurons involved in substrate-independent cerebral cortex tangential migration The response of migrating interneurons to neurotransmitters that alter electrical activity in cells in calcium dependent manner. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150102 biolink:NamedThing negative regulation of monocyte activation Any process that stops, prevents or reduces the frequency, rate or extent of monocyte activation. tmpzr1t_l9r_go_relaxed.owl repression of monocyte activation bc 2019-04-26T20:01:24Z biological_process owl:Class GO:0102348 biolink:NamedThing trans-docosan-2-enoyl-CoA reductase activity Catalysis of the reaction: behenoyl-CoA + NADP <=> trans-2-docosenoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13307 molecular_function owl:Class GO:1903378 biolink:NamedThing positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|upregulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|up-regulation of neuron apoptosis in response to oxidative stress|positive regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|positive regulation of neuron apoptosis in response to oxidative stress|activation of neuron apoptosis in response to oxidative stress|upregulation of neuron apoptosis in response to oxidative stress|up-regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress|up regulation of neuron apoptosis in response to oxidative stress|activation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress bf 2014-08-26T13:03:36Z biological_process owl:Class GO:0010185 biolink:NamedThing regulation of cellular defense response Any process that modulates the frequency, rate or extent of cellular defense response. tmpzr1t_l9r_go_relaxed.owl regulation of cellular defence response biological_process owl:Class GO:0033996 biolink:NamedThing levan fructotransferase (DFA-IV-forming) activity Catalysis of the reaction: beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)]n-D-fructofuranoside = beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)](n-1)-D-fructofuranoside + di-beta-D-fructofuranose 2,6':2',6-dianhydride. This reaction is the production of di-beta-D-fructofuranose 2,6':2',6-dianhydride (DFA IV) by successively eliminating the diminishing (2->6)-beta-D-fructan (levan) chain from the terminal D-fructosyl-D-fructosyl disaccharide. tmpzr1t_l9r_go_relaxed.owl 2,6-beta-D-fructan lyase (di-beta-D-fructofuranose-2,6':2',6-dianhydride-forming) activity|2,6-beta-D-fructan D-fructosyl-D-fructosyltransferase (forming di-beta-D-fructofuranose 2,6':2',6-dianhydride) activity|levan fructotransferase activity MetaCyc:4.2.2.16-RXN|EC:4.2.2.16 molecular_function owl:Class GO:0036084 biolink:NamedThing GDP-fucose import into endoplasmic reticulum lumen The directed movement of GDP-fucose into the endoplasmic reticulum lumen. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-fucose transport across endoplasmic reticulum membrane|GDP-fucose transport into endoplasmic reticulum lumen|GDP-fucose import into endoplasmic reticulum bf 2011-12-21T01:45:11Z biological_process owl:Class GO:0002567 biolink:NamedThing somatic diversification of FREP-based immune receptors The process that results in the generation of sequence diversity of the FREP-based immune receptors of snails. tmpzr1t_l9r_go_relaxed.owl Note that this type of immune receptor has been found in snails (Pulmonata, ncbi_axonomy_id:6519), but may also be seen in other species. biological_process owl:Class GO:0002200 biolink:NamedThing somatic diversification of immune receptors The somatic process allowing for the production of immune receptors whose specificity is not encoded in the germline genomic sequences. tmpzr1t_l9r_go_relaxed.owl Note that this process covers somatic recombination, gene conversion, hypermutation, N-region addition, and alternate splicing processes of immune receptor diversification. biological_process owl:Class GO:0009729 biolink:NamedThing detection of brassinosteroid stimulus The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of brassinosteroid stimulus biological_process owl:Class GO:0046972 biolink:NamedThing histone acetyltransferase activity (H4-K16 specific) Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 16) = CoA + histone H4 N6-acetyl-L-lysine (position 16). This reaction represents the addition of an acetyl group to the lysine at position 16 of histone H4. tmpzr1t_l9r_go_relaxed.owl histone lysine acetyltransferase activity (H4-K16 specific) molecular_function owl:Class GO:0010485 biolink:NamedThing H4 histone acetyltransferase activity Catalysis of the reaction: acetyl-CoA + histone H4 = CoA + acetyl-histone H4. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061599 biolink:NamedThing molybdopterin molybdotransferase activity Catalysis of the reaction adenylyl-molybdopterin + molybdate = molybdenum cofactor + AMP. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-947531|EC:2.10.1.1|RHEA:35047 dph 2014-02-10T14:30:31Z molecular_function owl:Class GO:1901905 biolink:NamedThing response to tamsulosin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tamsulosin stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2013-02-13T10:14:41Z biological_process owl:Class GO:0030550 biolink:NamedThing acetylcholine receptor inhibitor activity Binds to and stops, prevents or reduces the activity of an acetylcholine receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052908 biolink:NamedThing 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity Catalysis of the reaction: 4 S-adenosyl-L-methionine + adenine(1518)/adenine(1519) in 16S rRNA = 4 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(1518)/N(6)-dimethyladenine(1519) in 16S rRNA. tmpzr1t_l9r_go_relaxed.owl S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase activity https://github.com/geneontology/go-ontology/issues/14459 RHEA:19609|EC:2.1.1.182|MetaCyc:RXN-11633 molecular_function owl:Class GO:0043309 biolink:NamedThing regulation of eosinophil degranulation Any process that modulates the frequency, rate, or extent of eosinophil degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of eosinophil granule exocytosis biological_process owl:Class GO:0099169 biolink:NamedThing anchored component of postsynaptic specialization membrane of symmetric synapse The component of the postsynaptic specialization membrane of a symmetric synapse consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-10T12:01:53Z cellular_component owl:Class GO:0035853 biolink:NamedThing chromosome passenger complex localization to spindle midzone A cellular protein complex localization that acts on a chromosome passenger complex; as a result, the complex is transported to, or maintained in, a specific location at the spindle midzone. A chromosome passenger complex is a protein complex that contains the BIR-domain-containing protein Survivin, Aurora B kinase, INCENP and Borealin, and coordinates various events based on its location to different structures during the course of mitosis. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap. tmpzr1t_l9r_go_relaxed.owl CPC complex localization to spindle midzone|chromosomal passenger complex localization to spindle midzone|CPC localization to spindle midzone|chromosome passenger complex localization to central spindle|chromosome passenger complex localisation to spindle midzone|chromosome passenger complex localization to spindle equator bf 2011-05-13T01:19:51Z biological_process owl:Class GO:0046926 biolink:NamedThing peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine The post-translational cross-linking of a cysteine residue to an L-threonine residue to form 2-(S-L-cysteinyl)-D-allo-threonine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0342 biological_process owl:Class GO:0061325 biolink:NamedThing cell proliferation involved in outflow tract morphogenesis The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to the shaping of the outflow tract. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T09:29:30Z biological_process owl:Class GO:0047488 biolink:NamedThing heparin lyase activity Catalysis of the eliminative cleavage of polysaccharides containing 1,4-linked D-glucuronate or L-iduronate residues and 1,4-alpha-linked 2-sulfoamino-2-deoxy-6-sulfo-D-glucose residues to give oligosaccharides with terminal 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their nonreducing ends. tmpzr1t_l9r_go_relaxed.owl heparan sulfate lyase activity|heparinase activity|heparin eliminase activity EC:4.2.2.7|MetaCyc:4.2.2.7-RXN molecular_function owl:Class GO:0033611 biolink:NamedThing oxalate catabolic process The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate. tmpzr1t_l9r_go_relaxed.owl oxalate breakdown|oxalate degradation|oxalate catabolism|ethanedioic acid catabolic process|oxalic acid catabolic process|ethanedioate catabolic process biological_process owl:Class GO:1901810 biolink:NamedThing beta-carotene metabolic process The chemical reactions and pathways involving beta-carotene. tmpzr1t_l9r_go_relaxed.owl beta-carotene metabolism yaf 2013-01-22T10:30:23Z biological_process owl:Class GO:0038022 biolink:NamedThing G protein-coupled olfactory receptor activity Combining with an odorant and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl olfactory receptor activity, G-protein coupled|odorant receptor activity, G-protein coupled|G-protein coupled odorant receptor activity|G-protein coupled olfactory receptor activity bf 2011-07-01T11:23:51Z molecular_function owl:Class GO:0097730 biolink:NamedThing non-motile cilium A cilium which may have a variable array of axonemal microtubules but does not contain molecular motors. tmpzr1t_l9r_go_relaxed.owl sensory cilium|immotile cilium|nonmotile primary cilium|immotile primary cilium|nonmotile primary cilia|nonmotile cilium pr 2016-09-29T14:02:11Z GO:0031513 cellular_component owl:Class GO:2000936 biolink:NamedThing regulation of cellotriose catabolic process Any process that modulates the frequency, rate or extent of cellotriose catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellotriose catabolism tt 2011-08-01T12:45:26Z biological_process owl:Class GO:0016692 biolink:NamedThing NADH peroxidase activity Catalysis of the reaction: H(2)O(2) + H(+) + NADH = 2 H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide peroxidase activity|NADH-peroxidase activity|NAD peroxidase activity|NADH:hydrogen-peroxide oxidoreductase activity|diphosphopyridine nucleotide peroxidase activity|DPNH peroxidase activity MetaCyc:NADH-PEROXIDASE-RXN|EC:1.11.1.1|KEGG_REACTION:R00090|RHEA:18509 molecular_function owl:Class GO:1901694 biolink:NamedThing positive regulation of compound eye retinal cell apoptotic process Any process that activates or increases the frequency, rate or extent of compound eye retinal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of compound eye retinal cell apoptotic process|induction of compound eye retinal cell programmed cell death|activation of compound eye retinal cell apoptotic process|up regulation of compound eye retinal cell apoptotic process|upregulation of compound eye retinal cell apoptotic process pr 2012-12-12T10:28:45Z GO:0046675 biological_process owl:Class GO:1901692 biolink:NamedThing regulation of compound eye retinal cell apoptotic process Any process that modulates the frequency, rate or extent of compound eye retinal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-12T10:28:35Z biological_process owl:Class GO:0042740 biolink:NamedThing exogenous antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of an antibiotic that has originated externally to the cell or organism. tmpzr1t_l9r_go_relaxed.owl exogenous antibiotic degradation|exogenous antibiotic breakdown|exogenous antibiotic catabolism biological_process owl:Class GO:0008445 biolink:NamedThing D-aspartate oxidase activity Catalysis of the reaction: D-aspartate + H2O + O2 = oxaloacetate + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl D-aspartate:oxygen oxidoreductase (deaminating)|D-aspartic oxidase activity|aspartic oxidase activity EC:1.4.3.1|RHEA:12512|MetaCyc:D-ASPARTATE-OXIDASE-RXN|Reactome:R-HSA-6810076 molecular_function owl:Class GO:0075030 biolink:NamedThing modulation of formation of symbiont germ tube hook structure for appressorium development Any process that modulates the frequency, rate or extent of symbiont germ tube hook structure formation. tmpzr1t_l9r_go_relaxed.owl modulation of germ tube tip of symbiont on or near the exterior of host|regulation of formation of symbiont germ tube hook structure on or near host|modulation of symbiont germ tube hook structure formation on or near host biological_process owl:Class GO:0005893 biolink:NamedThing interleukin-2 receptor complex A protein complex that binds interleukin-2; comprises alpha, beta, and gamma subunits. tmpzr1t_l9r_go_relaxed.owl IL-2 receptor complex cellular_component owl:Class GO:0075292 biolink:NamedThing negative regulation of aplanospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of aplanospore formation, a process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006858 biolink:NamedThing extracellular transport The transport of substances that occurs outside cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045748 biolink:NamedThing positive regulation of R8 cell spacing in compound eye Any process that activates or enforces the correct R8 cell spacing in a compound eye. tmpzr1t_l9r_go_relaxed.owl activation of R8 spacing|up regulation of R8 spacing|up-regulation of R8 spacing|upregulation of R8 spacing|stimulation of R8 spacing|positive regulation of R8 spacing biological_process owl:Class GO:0000934 biolink:NamedThing porous cell septum A septum or cross wall which does not entirely span the space between two portions of cell wall and may contain a specialized central pore structure. A porous septum allows the movement of organelles and/or cytoplasm between compartments. tmpzr1t_l9r_go_relaxed.owl porous septum cellular_component owl:Class GO:0030428 biolink:NamedThing cell septum A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cross wall|septum cellular_component owl:Class GO:0043530 biolink:NamedThing adenosine 5'-monophosphoramidase activity Catalysis of the reaction: adenosine 5'-monophosphoramidate + H2O = AMP + NH4+. Other substrates include AMP-morpholidate, AMP-N-alanine methyl ester and AMP-alpha-acetyl lysine methyl ester. tmpzr1t_l9r_go_relaxed.owl adenosine 5' monophosphoramidase activity|adenosine 5'-monophosphoramidate hydrolase activity molecular_function owl:Class GO:0043250 biolink:NamedThing sodium-dependent organic anion transmembrane transporter activity Enables the transfer of organic anions from one side of a membrane to the other, in a sodium dependent manner. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903911 biolink:NamedThing positive regulation of receptor clustering Any process that activates or increases the frequency, rate or extent of receptor clustering. tmpzr1t_l9r_go_relaxed.owl upregulation of receptor clustering|up-regulation of receptor clustering|up regulation of receptor clustering|activation of receptor clustering als 2015-02-09T10:56:51Z biological_process owl:Class GO:1902731 biolink:NamedThing negative regulation of chondrocyte proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of the multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl down regulation of cartilage cell proliferation|negative regulation of chondrocyte cell proliferation|down-regulation of chondrocyte proliferation|down regulation of chondrocyte cell proliferation|down regulation of chondrocyte proliferation|down-regulation of chondrocyte cell proliferation|down-regulation of cartilage cell proliferation|inhibition of chondrocyte proliferation|inhibition of chondrocyte cell proliferation|negative regulation of cartilage cell proliferation|downregulation of chondrocyte cell proliferation|downregulation of chondrocyte proliferation|inhibition of cartilage cell proliferation|downregulation of cartilage cell proliferation mr 2014-02-24T16:11:02Z biological_process owl:Class GO:0075114 biolink:NamedThing suppression by symbiont of host transmembrane receptor-mediated signal transduction Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host transmembrane receptor-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "negative regulation by host of symbiont transmembrane receptor-mediated signal transduction ; GO:0075083". biological_process owl:Class GO:1990146 biolink:NamedThing protein localization to rhabdomere A process in which a protein is transported to, or maintained in, a location within a rhabdomere. tmpzr1t_l9r_go_relaxed.owl sart 2013-07-25T11:24:49Z biological_process owl:Class GO:1905050 biolink:NamedThing positive regulation of metallopeptidase activity Any process that activates or increases the frequency, rate or extent of metallopeptidase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of metalloproteinase activity|upregulation of metalloprotease activity|positive regulation of metalloproteinase activity|activation of metalloprotease activity|activation of metalloproteinase activity|activation of metallopeptidase activity|positive regulation of metalloprotease activity|up regulation of metalloproteinase activity|up regulation of metallopeptidase activity|up regulation of metalloprotease activity|up-regulation of metallopeptidase activity|up-regulation of metalloproteinase activity|up-regulation of metalloprotease activity|upregulation of metallopeptidase activity mm2 2016-03-15T16:44:46Z biological_process owl:Class GO:0014065 biolink:NamedThing phosphatidylinositol 3-kinase signaling A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions. tmpzr1t_l9r_go_relaxed.owl PI3K signal transduction|PI3K cascade|PI 3-kinase cascade|phosphatidylinositol 3-kinase signal transduction|PI3K signaling|phosphoinositide 3-kinase cascade|phosphatidylinositol 3-kinase cascade biological_process owl:Class GO:0048015 biolink:NamedThing phosphatidylinositol-mediated signaling A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol-mediated signal transduction|phosphatidylinositol-mediated signalling|phosphoinositide-mediated signaling|phosphoinositide-mediated signalling|inositol phospholipid-mediated signaling biological_process owl:Class GO:0097078 biolink:NamedThing FAL1-SGD1 complex A protein complex involved in the 18S rRNA biogenesis. In S. cerevisiae this complex consists of Fal1p and Sgd1p and in humans this complex consists of NOM1 and eIF4AIII subunits. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-17T09:59:10Z cellular_component owl:Class GO:0060782 biolink:NamedThing regulation of mesenchymal cell proliferation involved in prostate gland development Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation that contributes to the progression of the prostate gland over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-28T11:54:20Z biological_process owl:Class GO:0030083 biolink:NamedThing PSI associated light-harvesting complex I, LHCIa subcomplex A pigment protein complex that forms part of the photosystem I associated light-harvesting complex I; contains two proteins (usually about 24 and 21.5 kDa); has a fluorescence maximum between 680 and 690 nm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009518 biolink:NamedThing PSI associated light-harvesting complex I Protein-pigment complex associated with photosystem I. tmpzr1t_l9r_go_relaxed.owl LHCI cellular_component owl:Class GO:0045013 biolink:NamedThing carbon catabolite repression of transcription A transcription regulation process in which the presence of one carbon source leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription by carbon catabolites|carbon catabolite repression biological_process owl:Class GO:0002940 biolink:NamedThing tRNA N2-guanine methylation The process whereby a guanine in a tRNA is methylated at the N2 position of guanine. tmpzr1t_l9r_go_relaxed.owl tRNA m2-guanine biosynthesis hjd 2012-11-09T16:23:41Z biological_process owl:Class GO:0002299 biolink:NamedThing alpha-beta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of an alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl alpha-beta intraepithelial T lymphocyte differentiation|alpha-beta intraepithelial T cell development|alpha-beta intraepithelial T-lymphocyte differentiation|alpha-beta intraepithelial T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0097045 biolink:NamedThing phosphatidylserine exposure on blood platelet A phospholipid scrambling process that results in the appearance of phosphatidylserine on the surface of activated blood platelets, and triggers the clotting system. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-20T12:54:35Z biological_process owl:Class GO:1990887 biolink:NamedThing 2-polyprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol O-methyltransferase activity Catalysis of the reaction: 2-polyprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol + S-adenosyl-L-methionine = ubiquinol-n + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl sl 2015-10-28T22:17:54Z molecular_function owl:Class GO:0005773 biolink:NamedThing vacuole A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. tmpzr1t_l9r_go_relaxed.owl vacuolar carboxypeptidase Y Wikipedia:Vacuole cellular_component owl:Class GO:0010920 biolink:NamedThing negative regulation of inositol phosphate biosynthetic process Any process that decreases the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl negative regulation of inositol phosphate biosynthesis biological_process owl:Class GO:0006384 biolink:NamedThing transcription initiation from RNA polymerase III promoter Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. tmpzr1t_l9r_go_relaxed.owl transcription initiation from RNA polymerase III type 3 promoter|transcription initiation from RNA polymerase III type 2 promoter|transcription initiation from RNA polymerase III type 1 promoter|transcription initiation from RNA polymerase III hybrid type promoter|transcription initiation from Pol III promoter Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation. krc 2010-08-19T04:33:52Z GO:0001024|GO:0001022|GO:0001036|GO:0001023 biological_process owl:Class GO:0098847 biolink:NamedThing sequence-specific single stranded DNA binding Binding to single-stranded DNA of a specific nucleotide composition. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005753 biolink:NamedThing mitochondrial proton-transporting ATP synthase complex A proton-transporting ATP synthase complex found in the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrial respiratory chain complex V GO:0016470 cellular_component owl:Class GO:0050853 biolink:NamedThing B cell receptor signaling pathway A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte receptor signaling pathway|B-lymphocyte receptor signalling pathway|B cell receptor signalling pathway|B lymphocyte receptor signaling pathway|B-cell receptor signaling pathway|B-cell receptor signalling pathway|B lymphocyte receptor signalling pathway biological_process owl:Class GO:0050851 biolink:NamedThing antigen receptor-mediated signaling pathway A series of molecular signals initiated by the cross-linking of an antigen receptor on a B or T cell. tmpzr1t_l9r_go_relaxed.owl antigen receptor-mediated signalling pathway biological_process owl:Class GO:0044588 biolink:NamedThing laminaribiose binding Binding to laminaribiose, a disaccharide. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-26T01:19:40Z molecular_function owl:Class GO:0070492 biolink:NamedThing oligosaccharide binding Binding to an oligosaccharide, a molecule with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097225 biolink:NamedThing sperm midpiece The highly organized segment of the sperm flagellum which begins at the connecting piece and is characterized by the presence of 9 outer dense fibers (ODFs) that lie outside each of the 9 outer axonemal microtubule doublets and by a sheath of mitochondria that encloses the ODFs and the axoneme; the midpiece terminates about one-fourth of the way down the sperm flagellum at the annulus, which marks the beginning of the principal piece. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:23:41Z cellular_component owl:Class GO:0106251 biolink:NamedThing N4-acetylcytidine amidohydrolase activity Catalysis of the reaction N4-acetylcytidine +H2O = cytidine + acetate. tmpzr1t_l9r_go_relaxed.owl RHEA:62932 hjd 2020-02-19T20:31:17Z molecular_function owl:Class GO:1901212 biolink:NamedThing positive regulation of cardiac chamber formation Any process that activates or increases the frequency, rate or extent of cardiac chamber formation. tmpzr1t_l9r_go_relaxed.owl upregulation of cardiac chamber formation|activation of cardiac chamber formation|up-regulation of heart chamber formation|upregulation of heart chamber formation|up regulation of cardiac chamber formation|up-regulation of cardiac chamber formation|up regulation of heart chamber formation|positive regulation of heart chamber formation|activation of heart chamber formation rl 2012-07-31T07:19:05Z biological_process owl:Class GO:1901221 biolink:NamedThing positive regulation of cardiac chamber morphogenesis Any process that activates or increases the frequency, rate or extent of cardiac chamber morphogenesis. tmpzr1t_l9r_go_relaxed.owl upregulation of heart chamber morphogenesis|up regulation of cardiac chamber morphogenesis|up-regulation of cardiac chamber morphogenesis|activation of cardiac chamber morphogenesis|up regulation of heart chamber morphogenesis|positive regulation of heart chamber morphogenesis|activation of heart chamber morphogenesis|upregulation of cardiac chamber morphogenesis|up-regulation of heart chamber morphogenesis rl 2012-08-06T17:59:42Z biological_process owl:Class GO:1990570 biolink:NamedThing GDP-mannose transmembrane transport The process in which GDP-mannose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl GDP-mannose transport vw 2014-11-27T12:05:09Z GO:0015784 biological_process owl:Class GO:0090480 biolink:NamedThing purine nucleotide-sugar transmembrane transport The process in which a purine nucleotide-sugar is transported across a membrane. Purine nucleotide-sugars are purine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl purine nucleotide-sugar membrane transport|purine nucleotide-sugar transport Note that this term is not intended for use in annotating lateral movement within membranes. tb 2011-12-19T03:22:58Z GO:0036079 biological_process owl:Class GO:0030495 biolink:NamedThing bacteriochlorophyll catabolic process The chemical reactions and pathways resulting in the breakdown of bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants. tmpzr1t_l9r_go_relaxed.owl bacteriochlorophyll degradation|bacteriochlorophyll breakdown|bacteriochlorophyll catabolism biological_process owl:Class GO:0033020 biolink:NamedThing cyclopentanol metabolic process The chemical reactions and pathways involving cyclopentanol. tmpzr1t_l9r_go_relaxed.owl cyclopentanol metabolism biological_process owl:Class GO:1901720 biolink:NamedThing negative regulation of NMS complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of NMS complex assembly. The NMS complex is involved in chromosome segregation. tmpzr1t_l9r_go_relaxed.owl downregulation of NMS complex association involved in chromosome segregation|down-regulation of NMS complex interaction involved in chromosome segregation|downregulation of KMN complex interaction involved in chromosome segregation|inhibition of KMN complex interaction involved in chromosome segregation|negative regulation of NMS complex association involved in chromosome segregation|inhibition of NMS complex association involved in chromosome segregation|down regulation of KMN complex assembly involved in chromosome segregation|inhibition of NMS complex interaction involved in chromosome segregation|down-regulation of NMS complex association involved in chromosome segregation|down-regulation of KMN complex interaction involved in chromosome segregation|down regulation of KMN network assembly involved in chromosome segregation|down regulation of NMS complex interaction involved in chromosome segregation|negative regulation of NMS complex assembly involved in kinetochore assembly|negative regulation of KMN network assembly involved in chromosome segregation|down regulation of NMS complex association involved in chromosome segregation|negative regulation of KMN complex interaction involved in chromosome segregation|down-regulation of KMN network assembly involved in chromosome segregation|downregulation of KMN network assembly involved in chromosome segregation|inhibition of KMN network assembly involved in chromosome segregation|downregulation of NMS complex interaction involved in chromosome segregation jl 2012-12-20T11:44:22Z biological_process owl:Class GO:0035978 biolink:NamedThing histone H2A-S139 phosphorylation The modification of histone H2A by the addition of an phosphate group to a serine residue at position 139 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2A.x phosphorylation at S139 Residue 1 of histone H2AX is taken as the first residue following removal of the initiating Methionine (Met). bf 2011-08-22T11:34:09Z biological_process owl:Class GO:0106156 biolink:NamedThing peptidyl-lysine 4-dioxygenase activity Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 4-hydroxy-L-lysine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl RHEA:57156 hjd 2018-11-26T14:59:18Z molecular_function owl:Class GO:0009845 biolink:NamedThing seed germination The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Germination#Seed_germination biological_process owl:Class GO:0014869 biolink:NamedThing detection of muscle inactivity The series of events in which a muscle inactivity stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014870 biolink:NamedThing response to muscle inactivity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle inactivity stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048389 biolink:NamedThing intermediate mesoderm development The process whose specific outcome is the progression of the intermediate mesoderm over time, from its formation to the mature structure. The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008313 biolink:NamedThing gurken-activated receptor activity Combining with the ligand Gurken to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl gurken receptor activity molecular_function owl:Class GO:0005006 biolink:NamedThing epidermal growth factor-activated receptor activity Combining with an epidermal growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl EGF receptor activity|TGF-alpha receptor activity|EGFR|epidermal growth factor receptor activity|transforming growth factor-alpha receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand EGF. For receptors that bind other growth factors, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. GO:0005023 molecular_function owl:Class GO:0038167 biolink:NamedThing epidermal growth factor receptor signaling pathway via positive regulation of NF-kappaB transcription factor activity The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands, where the signal is passed on within the cell via activation of the transcription factor NF-kappaB. tmpzr1t_l9r_go_relaxed.owl epidermal growth factor receptor signalling pathway via positive regulation of NF-kappaB transcription factor activity|EGFR signaling pathway via activation of NF-kappaB bf 2012-05-15T11:49:30Z biological_process owl:Class GO:0050526 biolink:NamedThing poly(3-hydroxybutyrate) depolymerase activity Catalysis of the reaction: H2O + poly[(R)-3-hydroxybutanoate](n) = poly[(R)-3-hydroxybutanoate](x) + poly[(R)-3-hydroxybutanoate](n-x); x is 1-5. tmpzr1t_l9r_go_relaxed.owl poly(HA(SCL)) depolymerase activity|poly(HASCL) depolymerase activity|poly(3HB) depolymerase activity|poly((R)-hydroxyalkanoic acid) depolymerase activity|poly[(R)-hydroxyalkanoic acid] depolymerase|poly(HA) depolymerase activity|poly[(R)-3-hydroxybutyrate] hydrolase activity|PHB depolymerase activity MetaCyc:3.1.1.75-RXN|RHEA:11248|EC:3.1.1.75 molecular_function owl:Class GO:0070610 biolink:NamedThing regulation of fungal-type cell wall (1->3)-alpha-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-alpha glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in fungal-type cell walls, including those of ascospores. tmpzr1t_l9r_go_relaxed.owl regulation of fungal-type cell wall 1,3-alpha-glucan synthesis|regulation of fungal-type cell wall alpha-1,3-glucan formation|regulation of fungal-type cell wall 1,3-alpha-glucan formation|regulation of fungal-type cell wall 1,3-alpha-glucan biosynthesis|regulation of fungal-type cell wall alpha-1,3-glucan anabolism|regulation of fungal-type cell wall 1,3-alpha-glucan anabolism|regulation of fungal-type cell wall alpha-1,3-glucan synthesis|regulation of fungal-type cell wall alpha-1,3-glucan biosynthetic process|regulation of fungal type cell wall 1,3-alpha-glucan biosynthetic process|regulation of fungal-type cell wall alpha-1,3-glucan biosynthesis mah 2009-04-29T01:32:19Z biological_process owl:Class GO:0102360 biolink:NamedThing daphnetin 3-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose(2-) + 7,8-dihydroxycoumarin <=> UDP(3-) + 3-O-beta-D-glucosyl-daphnetin + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13452|EC:2.4.1.91 molecular_function owl:Class GO:0098967 biolink:NamedThing exocytic insertion of neurotransmitter receptor to postsynaptic membrane The exocytic fusion of neurotransmitter receptor containing vesicles with the postsynaptic membrane resulting in the integration of NT receptors, enabling them to participate in neurotransmitter reception. This process includes tethering and docking steps that prepare vesicles for fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070682 biolink:NamedThing proteasome regulatory particle assembly The aggregation, arrangement and bonding together of a mature, active proteasome regulatory particle complex. tmpzr1t_l9r_go_relaxed.owl proteasome regulatory complex assembly mah 2009-06-02T03:46:29Z biological_process owl:Class GO:0060599 biolink:NamedThing lateral sprouting involved in mammary gland duct morphogenesis The process in which a branch forms along the side of a mammary duct. tmpzr1t_l9r_go_relaxed.owl mammary gland duct secondary branching dph 2009-05-13T12:38:06Z biological_process owl:Class GO:0042103 biolink:NamedThing positive regulation of T cell homeostatic proliferation Any process that activates or increases the rate or extent of resting T cell proliferation. tmpzr1t_l9r_go_relaxed.owl stimulation of T cell homeostatic proliferation|positive regulation of T-lymphocyte homeostatic proliferation|positive regulation of T-cell homeostatic proliferation|up regulation of T cell homeostatic proliferation|positive regulation of T lymphocyte homeostatic proliferation|up-regulation of T cell homeostatic proliferation|positive regulation of resting T cell proliferation|activation of T cell homeostatic proliferation|upregulation of T cell homeostatic proliferation biological_process owl:Class GO:0046013 biolink:NamedThing regulation of T cell homeostatic proliferation Any process that modulates the frequency, rate or extent of resting T cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of T-lymphocyte homeostatic proliferation|regulation of T-cell homeostatic proliferation|regulation of T lymphocyte homeostatic proliferation|regulation of resting T cell proliferation biological_process owl:Class GO:1901755 biolink:NamedThing vitamin D3 biosynthetic process The chemical reactions and pathways resulting in the formation of vitamin D3. tmpzr1t_l9r_go_relaxed.owl calciol anabolism|calciol formation|calciol biosynthetic process|cholecalciferol biosynthetic process|vitamin D3 anabolism|calciol synthesis|vitamin D3 biosynthesis|calciol biosynthesis|cholecalciferol biosynthesis|vitamin D3 synthesis|vitamin D3 formation yaf 2013-01-14T11:11:09Z biological_process owl:Class GO:0042368 biolink:NamedThing vitamin D biosynthetic process The chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl vitamin D synthesis|ergocalciferol biosynthesis|cholecalciferol biosynthesis|cholecalciferol biosynthetic process|ergocalciferol biosynthetic process|vitamin D formation|calciferol biosynthetic process|calciferol biosynthesis|vitamin D biosynthesis|vitamin D anabolism biological_process owl:Class GO:0031394 biolink:NamedThing positive regulation of prostaglandin biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin. tmpzr1t_l9r_go_relaxed.owl positive regulation of prostaglandin anabolism|positive regulation of prostaglandin formation|up regulation of prostaglandin biosynthetic process|activation of prostaglandin biosynthetic process|positive regulation of prostaglandin biosynthesis|up-regulation of prostaglandin biosynthetic process|upregulation of prostaglandin biosynthetic process|positive regulation of prostaglandin synthesis|stimulation of prostaglandin biosynthetic process biological_process owl:Class GO:0047375 biolink:NamedThing N-acetylgalactosaminoglycan deacetylase activity Catalysis of the reaction: H2O + N-acetyl-D-galactosaminoglycan = acetate + D-galactosaminoglycan. tmpzr1t_l9r_go_relaxed.owl N-acetyl galactosaminoglycan deacetylase activity|Vi-polysaccharide deacetylase activity|N-acetyl-D-galactosaminoglycan acetylhydrolase activity|polysaccharide deacetylase activity EC:3.1.1.58|MetaCyc:3.1.1.58-RXN molecular_function owl:Class GO:0005612 biolink:NamedThing laminin-7 complex A laminin complex composed of alpha3, beta2 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-321 complex|laminin-7A cellular_component owl:Class GO:0018423 biolink:NamedThing protein C-terminal leucine carboxyl O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + protein L-leucine = S-adenosyl-L-homocysteine + protein L-leucine methyl ester. This modification occurs only at the oxygen atoms of the free alpha carboxyl group of a leucine residue at the C-terminus of the protein. tmpzr1t_l9r_go_relaxed.owl protein phosphatase methyltransferase activity|protein-leucine O-methyltransferase activity Reactome:R-HSA-8856945 molecular_function owl:Class GO:0003880 biolink:NamedThing protein C-terminal carboxyl O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of a carboxyl group at the C-terminal of a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein carboxyl methyltransferase activity molecular_function owl:Class GO:0062162 biolink:NamedThing positive regulation of pyocyanine biosynthetic process Any process that increases the frequency, rate or extent of a pyocyanine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of pyocyanin biosynthetic process dph 2019-11-06T14:40:35Z biological_process owl:Class GO:0071764 biolink:NamedThing nuclear outer membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear outer membrane. tmpzr1t_l9r_go_relaxed.owl nuclear outer membrane organisation|nuclear outer membrane organization and biogenesis mah 2010-03-29T04:03:37Z biological_process owl:Class GO:0075217 biolink:NamedThing negative regulation of spore encystment on host Any process that stops, prevents, or reduces the frequency, rate or extent of spore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008835 biolink:NamedThing diaminohydroxyphosphoribosylaminopyrimidine deaminase activity Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(2)O + H(+) = 5-amino-6-(5-phosphoribosylamino)uracil + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase activity|2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 2-aminohydrolase activity|2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate deaminase activity EC:3.5.4.26|RHEA:21868|MetaCyc:RIBOFLAVINSYNDEAM-RXN|KEGG_REACTION:R03459 GO:0008485 molecular_function owl:Class GO:0120053 biolink:NamedThing ribitol beta-1,4-xylosyltransferase activity Catalysis of the reaction: UDP-D-xylose + D-ribitol 5-phosphate-R = UDP + beta1,4-xylosyl-D-ribitol 5-phosphate-R. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T19:35:01Z molecular_function owl:Class GO:1901628 biolink:NamedThing positive regulation of postsynaptic membrane organization Any process that activates or increases the frequency, rate or extent of postsynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl positive regulation of postsynaptic membrane organisation|up-regulation of postsynaptic membrane organization|activation of postsynaptic membrane organisation|up regulation of postsynaptic membrane organization|activation of postsynaptic membrane organization|positive regulation of post-synaptic membrane organization|up regulation of postsynaptic membrane organisation|up-regulation of postsynaptic membrane organisation|upregulation of postsynaptic membrane organization|upregulation of postsynaptic membrane organisation ans 2012-11-15T11:40:24Z biological_process owl:Class GO:0050559 biolink:NamedThing copalyl diphosphate synthase activity Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = (+)-copalyl diphosphate. tmpzr1t_l9r_go_relaxed.owl diterpene cyclase activity|(+)-copalyl-diphosphate lyase (decyclizing) EC:5.5.1.12|KEGG_REACTION:R06298|RHEA:24316|MetaCyc:RXN-4861 molecular_function owl:Class GO:2001204 biolink:NamedThing regulation of osteoclast development Any process that modulates the frequency, rate or extent of osteoclast development. tmpzr1t_l9r_go_relaxed.owl regulation of osteoclast cell development yaf 2011-11-10T10:58:59Z biological_process owl:Class GO:0055093 biolink:NamedThing response to hyperoxia Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension. tmpzr1t_l9r_go_relaxed.owl response to increased oxygen tension|response to hyperoxic stress biological_process owl:Class GO:0036296 biolink:NamedThing response to increased oxygen levels Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen. tmpzr1t_l9r_go_relaxed.owl response to raised oxygen levels This term should be used when an increase in oxygen levels is not considered a stress response. For a hyperoxic stress response, consider instead 'response to hyperoxia ; GO:0055093. bf 2012-07-20T01:10:48Z biological_process owl:Class GO:1902548 biolink:NamedThing negative regulation of cellular response to vascular endothelial growth factor stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to vascular endothelial growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular response to vascular endothelial growth factor stimulus|down-regulation of cellular response to VEGFB|negative regulation of cellular response to VEGFA|down-regulation of cellular response to VEGF|down regulation of cellular response to VEGFA|inhibition of cellular response to vascular endothelial growth factor|negative regulation of cellular response to vascular endothelial growth factor|negative regulation of cellular response to VEGFB|down-regulation of cellular response to vascular endothelial growth factor stimulus|inhibition of cellular response to VEGF|negative regulation of cellular response to VEGF|downregulation of cellular response to VEGF|inhibition of cellular response to VEGFA|inhibition of cellular response to VEGFB|downregulation of cellular response to vascular endothelial growth factor stimulus|downregulation of cellular response to VEGFA|downregulation of cellular response to vascular endothelial growth factor|down regulation of cellular response to vascular endothelial growth factor|down-regulation of cellular response to vascular endothelial growth factor|inhibition of cellular response to vascular endothelial growth factor stimulus|downregulation of cellular response to VEGFB|down regulation of cellular response to VEGF|down-regulation of cellular response to VEGFA|down regulation of cellular response to VEGFB ADAMTS12 (UniProt ID P58397) in human in PMID:17895370 inhibits the formation of VEGF-induced tubular structures in BAE-1 cells (endothelial cell line). rl 2013-12-04T15:15:03Z biological_process owl:Class GO:2000143 biolink:NamedThing negative regulation of DNA-templated transcription, initiation Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-templated transcription initiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription initiation, DNA-dependent|negative regulation of DNA-dependent transcription, initiation|negative regulation of initiation of DNA-dependent transcription mah 2010-10-01T09:11:40Z biological_process owl:Class GO:0061349 biolink:NamedThing planar cell polarity pathway involved in cardiac right atrium morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the cardiac right atrium. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T10:52:01Z biological_process owl:Class GO:1905212 biolink:NamedThing positive regulation of fibroblast chemotaxis Any process that activates or increases the frequency, rate or extent of fibroblast chemotaxis. tmpzr1t_l9r_go_relaxed.owl up regulation of fibroblast chemotaxis|upregulation of fibroblast chemotaxis|up-regulation of fibroblast chemotaxis|activation of fibroblast chemotaxis sl 2016-06-02T20:08:59Z biological_process owl:Class GO:0010836 biolink:NamedThing negative regulation of protein ADP-ribosylation Any process that decreases the frequency, rate or extent of protein ADP-ribosylation. Protein ADP-ribosylation is the transfer, from NAD, of ADP-ribose to protein amino acids. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein amino acid ADP-ribosylation biological_process owl:Class GO:0090406 biolink:NamedThing pollen tube A tubular cell projection that is part of a pollen tube cell and extends from a pollen grain. tmpzr1t_l9r_go_relaxed.owl Carries the male gametes to into or near the ovule. May be branched in gymnosperms. This term replaces the obsolete term PO:0006345. Part of pollen tube cell (PO:0025195). tb 2011-01-10T01:59:40Z cellular_component owl:Class GO:0004854 biolink:NamedThing xanthine dehydrogenase activity Catalysis of the reaction: xanthine + NAD+ + H2O = urate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl xanthine:NAD+ oxidoreductase activity|NAD-xanthine dehydrogenase activity|xanthine oxidoreductase activity|xanthine-NAD oxidoreductase activity|xanthine/NAD(+) oxidoreductase activity|xanthine/NAD+ oxidoreductase activity MetaCyc:RXN0-901|RHEA:16669|EC:1.17.1.4 molecular_function owl:Class GO:0033137 biolink:NamedThing negative regulation of peptidyl-serine phosphorylation Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030785 biolink:NamedThing [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RuBisCO methyltransferase activity|ribulose-bisphosphate carboxylase-lysine N-methyltransferase activity|RuBisCO LSMT activity|S-adenosyl-L-methionine:3-phospho-D-glycerate-carboxy-lyase (dimerizing)-lysine N6-methyltransferase activity|S-adenosyl-L-methionine:3-phospho-D-glycerate-carboxy-lyase (dimerizing)-lysine 6-N-methyltransferase activity|ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit epsilonN-methyltransferase activity|ribulose-bisphosphate-carboxylase/oxygenase N-methyltransferase activity MetaCyc:2.1.1.127-RXN|RHEA:50996|EC:2.1.1.127 molecular_function owl:Class GO:0004142 biolink:NamedThing diacylglycerol cholinephosphotransferase activity Catalysis of the reaction: CDP-choline + 1,2-diacylglycerol = CMP + a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl cytidine diphosphocholine glyceride transferase activity|cytidine diphosphorylcholine diglyceride transferase activity|CDP-choline:1,2-diacylglycerol cholinephosphotransferase activity|1-alkyl-2-acetylglycerol cholinephosphotransferase activity|CDP-choline diglyceride phosphotransferase activity|1-alkyl-2-acetyl-sn-glycerol cholinephosphotransferase activity|cholinephosphotransferase activity|sn-1,2-diacylglycerol cholinephosphotransferase activity|1-alkyl-2-acetyl-m-glycerol:CDPcholine choline phosphotransferase activity|alkylacylglycerol choline phosphotransferase activity|CPT|alkylacylglycerol cholinephosphotransferase activity|diacylglycerol choline phosphotransferase activity|phosphorylcholine--glyceride transferase activity|phosphocholine diacylglyceroltransferase activity Reactome:R-HSA-1482961|RHEA:32939|MetaCyc:RXN-5781|Reactome:R-HSA-1482973|EC:2.7.8.2 molecular_function owl:Class GO:0017169 biolink:NamedThing CDP-alcohol phosphatidyltransferase activity Catalysis of the reaction: CDP + alcohol = CMP + phosphatidyl alcohol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046166 biolink:NamedThing glyceraldehyde-3-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde-3-phosphate biosynthesis|glyceraldehyde 3-phosphate biosynthesis|glyceraldehyde-3-phosphate synthesis|glyceraldehyde-3-phosphate anabolism|glyceraldehyde-3-phosphate formation|glyceraldehyde 3-phosphate biosynthetic process biological_process owl:Class GO:0008628 biolink:NamedThing hormone-mediated apoptotic signaling pathway A series of molecular signals mediated by the detection of a hormone, and which triggers the apoptotic signaling pathway in a cell. The pathway starts with reception of a hormone signal, and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis by hormones|apoptotic signaling pathway in response to hormone http://wiki.geneontology.org/index.php/Apoptosis_Curation_Manual#Other_children_of_apoptotic_signaling_pathway This term is placed under GO:0097190 apoptotic signaling pathway, rather than under one of its more specific children terms, to cover for the variety of apoptosis signaling mechanisms that different hormones may use. biological_process owl:Class GO:0106054 biolink:NamedThing tRNA U34 thiol-transferase activity Catalysis of the reaction: uridine34 in tRNA + a [TusE sulfur carrier protein]-S-sulfanylcysteine + ATP + a reduced electron acceptor = a 2-thiouridine34 in tRNA + a [TusE sulfur carrier protein]-L-cysteine + AMP + an oxidized electron acceptor + diphosphate + H+. tmpzr1t_l9r_go_relaxed.owl tRNA U34 2-thiouridylase|tRNA-specific 2-thiouridylase hjd 2017-09-05T19:10:12Z molecular_function owl:Class GO:0009662 biolink:NamedThing etioplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an etioplast. An etioplast is a plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions. tmpzr1t_l9r_go_relaxed.owl etioplast organization and biogenesis|etioplast organisation biological_process owl:Class GO:0016508 biolink:NamedThing long-chain-enoyl-CoA hydratase activity Catalysis of the reaction: a long-chain (3S)-3-hydroxyacyl-CoA = a long-chain trans-2-enoyl-CoA + H2O. A long-chain acyl-CoA is an acyl-CoA thioester where the acyl chain contains 13 to 22 carbon atoms. tmpzr1t_l9r_go_relaxed.owl long-chain enoyl coenzyme A hydratase activity|long-chain-(3S)-3-hydroxyacyl-CoA hydro-lyase activity Reactome:R-HSA-2066780|Reactome:R-HSA-2066778|Reactome:R-HSA-389986|EC:4.2.1.74|Reactome:R-HSA-390252|MetaCyc:LONG-CHAIN-ENOYL-COA-HYDRATASE-RXN|Reactome:R-HSA-6809263 molecular_function owl:Class GO:0031597 biolink:NamedThing cytosolic proteasome complex A proteasome complex found in the cytosol of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034810 biolink:NamedThing 4,5-dihydroxybenzo(a)pyrene dioxygenase activity Catalysis of the reaction: 4,5-dihydroxybenzo(a)pyrene + O2 = 4,5-chrysenedicarboxylate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1128 molecular_function owl:Class GO:0033200 biolink:NamedThing inositol heptakisphosphate 5-kinase activity Catalysis of the reaction: ATP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate = 4,5-bisdiphosphoinositol-1D-myoinositol (1,2,3,6)tetrakisphosphate, and ATP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate = 5,6-bisdiphosphoinositol-1D-myoinositol (1,2,3,4)tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl diphosphoinositol-pentakisphosphate 5-kinase activity|IP7 5-kinase activity molecular_function owl:Class GO:0050449 biolink:NamedThing casbene synthase activity Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = casbene + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl-diphosphate diphosphate-lyase (cyclizing, casbene-forming)|geranylgeranyl-diphosphate diphosphate-lyase (cyclizing)|casbene synthetase activity MetaCyc:CASBENE-SYNTHASE-RXN|KEGG_REACTION:R02064|EC:4.2.3.8|RHEA:14901 molecular_function owl:Class GO:0042496 biolink:NamedThing detection of diacyl bacterial lipopeptide The series of events in which a diacylated bacterial lipopeptide stimulus is received by a cell and converted into a molecular signal. Diacylated bacterial lipoproteins are lipopeptides of bacterial origin containing a nonprotein moiety consisting of two acyl groups. tmpzr1t_l9r_go_relaxed.owl perception of diacylated bacterial lipopeptide|perception of diacylated bacterial lipoprotein|detection of diacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. biological_process owl:Class GO:0071724 biolink:NamedThing response to diacyl bacterial lipopeptide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diacylated bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl response to diacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. mah 2010-03-17T02:14:41Z biological_process owl:Class GO:0031474 biolink:NamedThing myosin IV complex A myosin complex containing one or more class IV myosin heavy chains and associated light chains; myosin IV is relatively uncharacterized, but is predicted to have a single motor domain, one IQ motif and a tail with a Myosin Tail Homology (myTH4) domain homologous to that in the tails of myosins VII and XV. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904115 biolink:NamedThing axon cytoplasm Any cytoplasm that is part of a axon. tmpzr1t_l9r_go_relaxed.owl axoplasm sl 2015-04-06T18:13:14Z cellular_component owl:Class GO:0032767 biolink:NamedThing copper-dependent protein binding Binding to a protein or protein complex, in the presence of copper. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061730 biolink:NamedThing C-rich strand telomeric DNA binding Binding to C-rich, single-stranded, telomere-associated DNA. tmpzr1t_l9r_go_relaxed.owl dph 2015-08-20T09:08:27Z molecular_function owl:Class GO:1905098 biolink:NamedThing negative regulation of guanyl-nucleotide exchange factor activity Any process that stops, prevents or reduces the frequency, rate or extent of guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl inhibition of GEF|down-regulation of guanyl-nucleotide releasing factor|inhibition of guanyl-nucleotide release factor activity|down regulation of guanyl-nucleotide release factor activity|down regulation of guanyl-nucleotide exchange factor activity|downregulation of GEF|down-regulation of GNRP|inhibition of guanyl-nucleotide releasing factor|inhibition of GNRP|down-regulation of guanyl-nucleotide release factor activity|down-regulation of guanyl-nucleotide exchange factor activity|negative regulation of GEF|inhibition of guanyl-nucleotide exchange factor activity|downregulation of guanyl-nucleotide exchange factor activity|inhibition of GDP-dissociation stimulator activity|negative regulation of GDP-dissociation stimulator activity|negative regulation of GNRP|down-regulation of GDS|negative regulation of GDS|down-regulation of GDP-dissociation stimulator activity|down-regulation of GEF|downregulation of GDS|downregulation of guanyl-nucleotide release factor activity|down regulation of guanyl-nucleotide releasing factor|downregulation of guanyl-nucleotide releasing factor|down regulation of GEF|down regulation of GNRP|negative regulation of guanyl-nucleotide releasing factor|inhibition of GDS|downregulation of GDP-dissociation stimulator activity|down regulation of GDP-dissociation stimulator activity|down regulation of GDS|downregulation of GNRP|negative regulation of guanyl-nucleotide release factor activity https://github.com/geneontology/go-ontology/issues/18750 sl 2016-03-31T16:09:45Z biological_process owl:Class GO:0042911 biolink:NamedThing acridine transmembrane transporter activity Enables the directed movement of acridine (10-azaanthracene), a heterocyclic ring compound found in crude coal-tar anthracene from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl acridine transporter activity molecular_function owl:Class GO:1903208 biolink:NamedThing negative regulation of hydrogen peroxide-induced neuron death Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-induced neuron death. tmpzr1t_l9r_go_relaxed.owl negative regulation of neuron death in response to H2O2|negative regulation of neuronal cell death in response to hydrogen peroxide|inhibition of neuron death in response to hydrogen peroxide|inhibition of hydrogen peroxide-induced neuron death|down-regulation of neuronal cell death in response to hydrogen peroxide|down regulation of hydrogen peroxide-induced neuron death|down regulation of neuron death in response to hydrogen peroxide|down-regulation of neuron death in response to hydrogen peroxide|down-regulation of hydrogen peroxide-induced neuron death|down-regulation of neuron death in response to H2O2|downregulation of neuron death in response to hydrogen peroxide|neuroprotection against hydrogen peroxide|protection against hydrogen peroxide-induced neuron death|down regulation of neuronal cell death in response to hydrogen peroxide|downregulation of hydrogen peroxide-induced neuron death|downregulation of neuronal cell death in response to hydrogen peroxide|neuroprotection against H2O2-induced cell death|downregulation of neuron death in response to H2O2|protection against H2O2-induced neuron death|inhibition of neuronal cell death in response to hydrogen peroxide|inhibition of neuron death in response to H2O2|negative regulation of neuron death in response to hydrogen peroxide|down regulation of neuron death in response to H2O2 bf 2014-07-21T16:27:11Z biological_process owl:Class GO:0046409 biolink:NamedThing p-coumarate 3-hydroxylase activity Catalysis of the reaction: shikimate or quinate ester of p-coumaric acid + NADPH + H+ + O2 = caffeic acid conjugate (caffeoyl shikimic acid or chlorogenic acid) + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP98A3 molecular_function owl:Class GO:0003356 biolink:NamedThing regulation of cilium beat frequency Any process that modulates the frequency of cilium movement, the directed, self-propelled movement of a cilium. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule-based flagellum beat frequency|regulation of flagellum beat frequency Note that we deem cilium and microtubule-based flagellum to be equivalent. dph 2009-12-03T10:27:12Z GO:0036144 biological_process owl:Class GO:0090652 biolink:NamedThing basolateral cytoplasm The region of the cytoplasm located at the basolateral side of the cell. Used in reference to animal polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-01T15:46:19Z cellular_component owl:Class GO:0045766 biolink:NamedThing positive regulation of angiogenesis Any process that activates or increases angiogenesis. tmpzr1t_l9r_go_relaxed.owl activation of angiogenesis|upregulation of angiogenesis|stimulation of angiogenesis|up regulation of angiogenesis|up-regulation of angiogenesis biological_process owl:Class GO:0045898 biolink:NamedThing regulation of RNA polymerase II transcription preinitiation complex assembly Any process that modulates the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of RNA polymerase II transcriptional preinitiation complex formation|regulation of RNA polymerase II transcriptional preinitiation complex assembly|regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis|regulation of RNA polymerase II transcriptional pre-initiation complex assembly biological_process owl:Class GO:1900637 biolink:NamedThing regulation of asperfuranone biosynthetic process Any process that modulates the frequency, rate or extent of asperfuranone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of asperfuranone formation|regulation of asperfuranone biosynthesis|regulation of asperfuranone synthesis|regulation of asperfuranone anabolism di 2012-05-22T03:49:55Z biological_process owl:Class GO:1905911 biolink:NamedThing positive regulation of dauer entry Any process that activates or increases the frequency, rate or extent of dauer entry. tmpzr1t_l9r_go_relaxed.owl upregulation of dauer entry|up-regulation of nematode entry into dormancy|up regulation of nematode entry into dormancy|activation of nematode entry into dormancy|upregulation of nematode entry into dormancy|positive regulation of nematode entry into dormancy|up regulation of dauer entry|up-regulation of dauer entry|activation of dauer entry hbye 2017-02-06T15:34:20Z biological_process owl:Class GO:0099117 biolink:NamedThing protein transport along microtubule to cell tip The movement of a protein along a microtubule to the cell-tip, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-15T11:09:54Z biological_process owl:Class GO:0017057 biolink:NamedThing 6-phosphogluconolactonase activity Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+). tmpzr1t_l9r_go_relaxed.owl 6-phospho-D-glucono-1,5-lactone lactonohydrolase activity|6-PGL|phosphogluconolactonase activity MetaCyc:6PGLUCONOLACT-RXN|KEGG_REACTION:R02035|RHEA:12556|EC:3.1.1.31|Reactome:R-HSA-71296 molecular_function owl:Class GO:0019413 biolink:NamedThing acetate biosynthetic process The chemical reactions and pathways resulting in the formation of acetate, the anion of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate biosynthesis|acetate anabolism|acetate formation|acetate synthesis biological_process owl:Class GO:0051135 biolink:NamedThing positive regulation of NK T cell activation Any process that activates or increases the frequency, rate or extent of natural killer T cell activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of NKT cell activation|activation of NK T cell activation|positive regulation of NK T-cell activation|up regulation of NK T cell activation|positive regulation of NT cell activation|upregulation of NK T cell activation|stimulation of NK T cell activation|positive regulation of NK T-lymphocyte activation|positive regulation of NK T lymphocyte activation|up-regulation of NK T cell activation|positive regulation of natural T cell activation|positive regulation of natural killer T cell activation biological_process owl:Class GO:0071519 biolink:NamedThing actomyosin contractile ring actin filament bundle assembly A process of actin filament bundle formation that occurs in the context of assembling an actomyosin contractile ring during cytokinesis. tmpzr1t_l9r_go_relaxed.owl actin filament bundle assembly involved in cytokinetic actomyosin contractile ring assembly|actin filament bundle assembly involved in actomyosin contractile ring formation mah 2010-01-06T05:27:59Z biological_process owl:Class GO:0022027 biolink:NamedThing interkinetic nuclear migration The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004971 biolink:NamedThing AMPA glutamate receptor activity An ionotropic glutamate receptor activity that exhibits fast gating by glutamate and acts by opening a cation channel permeable to sodium, potassium, and, in the absence of a GluR2 subunit, calcium. tmpzr1t_l9r_go_relaxed.owl alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|AMPA receptor activity Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'ionotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'. molecular_function owl:Class GO:1900640 biolink:NamedThing regulation of austinol biosynthetic process Any process that modulates the frequency, rate or extent of austinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of austinol biosynthesis|regulation of austinol synthesis|regulation of austinol anabolism|regulation of austinol formation di 2012-05-22T03:57:33Z biological_process owl:Class GO:0018546 biolink:NamedThing nitrobenzene nitroreductase activity Catalysis of the reaction: nitrobenzene + 2 NADPH + 2 H+ = hydroxyaminobenzene + 2 NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0245|RHEA:52884|MetaCyc:RXN-8815 molecular_function owl:Class GO:0052618 biolink:NamedThing coenzyme F420-0:L-glutamate ligase activity Catalysis of the reaction: GTP + L-glutamate + factor F420-0 = GDP + H+ + factor gamma-F420-1 + phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8080|RHEA:30555|EC:6.3.2.31 molecular_function owl:Class GO:0043773 biolink:NamedThing coenzyme F420-0 gamma-glutamyl ligase activity Catalysis of the reactions: (1) GTP + F420-0 + L-glutamate = GDP + phosphate + F420-1, and (2) GTP + F420-1 + L-glutamate = GDP + phosphate + gamma-F420-2. This is the GTP-dependent successive addition of two L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form F420-0-glutamyl-glutamate (F420-2), with a gamma-linkage between the two glutamates. tmpzr1t_l9r_go_relaxed.owl F420-0 gamma-glutamyl ligase activity molecular_function owl:Class GO:0030557 biolink:NamedThing tRNA modification guide activity Specifies the site of a posttranscriptional modification in a tRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:1901839 biolink:NamedThing regulation of RNA polymerase I regulatory region sequence-specific DNA binding Any process that modulates the frequency, rate or extent of RNA polymerase I regulatory region sequence-specific DNA binding. tmpzr1t_l9r_go_relaxed.owl sart 2013-01-23T10:24:33Z biological_process owl:Class GO:0033009 biolink:NamedThing nucleomorph A small, vestigial nucleus found in some plastids that derive from a eukaryotic endosymbiont. Observed in chlorarachniophytes and cryptomonads, which acquired their plastids from a green and red alga respectively. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nucleomorph cellular_component owl:Class GO:1901462 biolink:NamedThing positive regulation of response to formic acid Any process that activates or increases the frequency, rate or extent of response to formic acid. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to formic acid|activation of response to formic acid|upregulation of response to formic acid|up regulation of response to formic acid tt 2012-10-02T14:29:20Z biological_process owl:Class GO:0045839 biolink:NamedThing negative regulation of mitotic nuclear division Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitosis|down-regulation of mitosis|downregulation of mitosis|down regulation of mitosis|inhibition of mitosis biological_process owl:Class GO:0042255 biolink:NamedThing ribosome assembly The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. tmpzr1t_l9r_go_relaxed.owl ribosomal subunit assembly GO:0042257 biological_process owl:Class GO:0034850 biolink:NamedThing isooctane monooxygenase activity Catalysis of the reaction: isooctane + 1/2 O2 = 2,4,4-trimethyl-1-pentanol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1269|EC:1.13.12.- molecular_function owl:Class GO:1902566 biolink:NamedThing regulation of eosinophil activation Any process that modulates the frequency, rate or extent of eosinophil activation. tmpzr1t_l9r_go_relaxed.owl ecu 2013-12-10T15:54:35Z biological_process owl:Class GO:0009057 biolink:NamedThing macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. tmpzr1t_l9r_go_relaxed.owl multicellular organismal macromolecule catabolic process|macromolecule degradation|macromolecule catabolism|biopolymer catabolic process|macromolecule breakdown GO:0044266|GO:0043285 biological_process owl:Class GO:0032596 biolink:NamedThing protein transport into membrane raft The directed movement of a protein into a membrane raft. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. tmpzr1t_l9r_go_relaxed.owl receptor translocation into membrane raft|receptor transport into membrane raft|protein translocation into membrane raft|protein transport into lipid raft biological_process owl:Class GO:1990719 biolink:NamedThing C1 axonemal microtubule One of two microtubules present in the axonemal central pair. It is distinguishable from the C2 axonemal microtubule (also called C2 tubule) by the presence of differing protein components of the projections. tmpzr1t_l9r_go_relaxed.owl C1 tubule krc 2015-03-27T22:55:12Z cellular_component owl:Class GO:0007555 biolink:NamedThing regulation of ecdysteroid secretion Any process that modulates the frequency, rate or extent of the regulated release of ecdysteroid from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010488 biolink:NamedThing UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + N-glycan = galactose-beta-1,3-N-glycan + UDP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098009 biolink:NamedThing viral terminase, large subunit The part of the viral terminase complex that contains the translocase and endonuclease activities and allows the translocation of the phage DNA into the procapsid. The large subunit usually assembles as a heterooligomer with the small subunit. tmpzr1t_l9r_go_relaxed.owl virus terminase, large subunit This term should only be used when the large subunit consists of more than one polypeptide. bm 2012-07-25T10:13:00Z cellular_component owl:Class GO:0016576 biolink:NamedThing histone dephosphorylation The modification of histones by removal of phosphate groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031627 biolink:NamedThing telomeric loop formation The process in which linear telomeric DNA is remodeled into duplex loops, by the invasion of a 3' single-stranded overhang into the duplex region. tmpzr1t_l9r_go_relaxed.owl T loop biosynthesis|t-loop formation|t-loop biosynthesis|T loop formation biological_process owl:Class GO:1905866 biolink:NamedThing positive regulation of Atg1/ULK1 kinase complex assembly Any process that activates or increases the frequency, rate or extent of Atg1/ULK1 kinase complex assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of ULK1-ATG13-FIP200 complex assembly|up regulation of ATG1-ATG13 complex assembly|upregulation of ATG1-ATG13 complex formation|activation of ATG1 kinase complex assembly|activation of Atg1p signalling complex assembly|up regulation of ULK1 signaling complex assembly|up-regulation of ATG1/ULK1 kinase complex assembly|activation of ATG1 kinase complex formation|activation of ULK1 signaling complex formation|up-regulation of ATG1/ULK1 signaling complex assembly|up-regulation of ATG1 kinase complex assembly|positive regulation of ATG1 kinase complex assembly|up-regulation of ULK1-ATG13-FIP200 complex assembly|positive regulation of ATG1-ATG13 complex formation|upregulation of ULK1-ATG13-RB1CC1 complex formation|positive regulation of ATG1/ULK1 signaling complex assembly|up regulation of ULK1-ATG13-FIP200 complex formation|up-regulation of ATG1-ATG13 complex assembly|activation of ULK1-ATG13-RB1CC1 complex assembly|upregulation of ULK1-ATG13-FIP200 complex assembly|activation of ATG1/ULK1 signaling complex formation|upregulation of ATG1/ULK1 signaling complex assembly|up-regulation of Atg1p signalling complex formation|up-regulation of ULK1 signaling complex formation|positive regulation of ULK1-ATG13-RB1CC1 complex formation|upregulation of ATG1/ULK1 signaling complex formation|upregulation of ATG1/ULK1 kinase complex assembly|activation of ATG1-ATG13 complex formation|up regulation of Atg1p signalling complex formation|up regulation of ATG1/ULK1 signaling complex formation|upregulation of ATG1 kinase complex assembly|positive regulation of ATG1-ATG13 complex assembly|up-regulation of ULK1-ATG13-RB1CC1 complex assembly|activation of ATG1/ULK1 signaling complex assembly|upregulation of Atg1p signalling complex assembly|up regulation of ATG1 kinase complex formation|upregulation of ATG1 kinase complex formation|up regulation of ATG1/ULK1 signaling complex assembly|positive regulation of ULK1 signaling complex assembly|upregulation of ATG1/ULK1 kinase complex formation|upregulation of ATG1-ATG13 complex assembly|up-regulation of ULK1 signaling complex assembly|positive regulation of Atg1p signalling complex formation|upregulation of ULK1 signaling complex formation|up regulation of ULK1 signaling complex formation|positive regulation of ATG1 kinase complex formation|activation of Atg1p signalling complex formation|up regulation of ULK1-ATG13-RB1CC1 complex formation|activation of ATG1/ULK1 kinase complex formation|up-regulation of ATG1/ULK1 kinase complex formation|activation of ATG1/ULK1 kinase complex assembly|up-regulation of ATG1/ULK1 signaling complex formation|up regulation of ATG1/ULK1 kinase complex formation|positive regulation of ULK1-ATG13-FIP200 complex formation|up-regulation of ATG1-ATG13 complex formation|positive regulation of ATG1/ULK1 kinase complex formation|positive regulation of Atg1p signalling complex assembly|activation of ULK1-ATG13-FIP200 complex formation|positive regulation of ULK1-ATG13-FIP200 complex assembly|up regulation of Atg1p signalling complex assembly|activation of ULK1-ATG13-FIP200 complex assembly|up-regulation of ATG1 kinase complex formation|upregulation of Atg1p signalling complex formation|upregulation of ULK1-ATG13-RB1CC1 complex assembly|up-regulation of ULK1-ATG13-RB1CC1 complex formation|activation of ATG1-ATG13 complex assembly|positive regulation of ULK1 signaling complex formation|activation of ULK1-ATG13-RB1CC1 complex formation|up regulation of ULK1-ATG13-RB1CC1 complex assembly|positive regulation of ULK1-ATG13-RB1CC1 complex assembly|up regulation of ATG1-ATG13 complex formation|up regulation of ATG1 kinase complex assembly|activation of ULK1 signaling complex assembly|up-regulation of ULK1-ATG13-FIP200 complex formation|upregulation of ULK1 signaling complex assembly|positive regulation of ATG1/ULK1 signaling complex formation|upregulation of ULK1-ATG13-FIP200 complex formation|up-regulation of Atg1p signalling complex assembly|up regulation of ATG1/ULK1 kinase complex assembly pr 2017-01-26T13:23:44Z biological_process owl:Class GO:0005416 biolink:NamedThing amino acid:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + cation(out) = amino acid(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl cation:amino acid symporter activity|cation/amino acid symporter activity molecular_function owl:Class GO:0036143 biolink:NamedThing kringle domain binding Binding to a kringle domain. Kringle domains are protein domains that fold into large loops stabilized by 3 disulfide linkages, and are important in protein-protein interactions with blood coagulation factors. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-09T09:49:43Z molecular_function owl:Class GO:0003697 biolink:NamedThing single-stranded DNA binding Binding to single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl ssDNA binding Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA. GO:0003699|GO:0003698 molecular_function owl:Class GO:0004698 biolink:NamedThing calcium-dependent protein kinase C activity Calcium-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl calcium-dependent PKC activity|conventional protein kinase C activity Reactome:R-HSA-416639|Reactome:R-HSA-114684|EC:2.7.11.13|Reactome:R-HSA-114683|Reactome:R-HSA-421007 This reaction requires diacylglycerol and calcium. molecular_function owl:Class GO:0009931 biolink:NamedThing calcium-dependent protein serine/threonine kinase activity Calcium-dependent catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl These reactions are dependent on the presence of calcium ions. molecular_function owl:Class GO:0052781 biolink:NamedThing chitobiose catabolic process The chemical reactions and pathways resulting in the breakdown of any chitobiose, a family of compounds derived from chitin and based on the structure of D-glucosaminyl-(1->4)-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-03T08:54:17Z biological_process owl:Class GO:0035571 biolink:NamedThing N-terminal peptidyl-serine monomethylation The monomethylation of the N-terminal serine of proteins to form the derivative N-methylserine. tmpzr1t_l9r_go_relaxed.owl bf 2010-08-06T01:58:56Z biological_process owl:Class GO:1901070 biolink:NamedThing guanosine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of guanosine-containing compounds (guanosines). tmpzr1t_l9r_go_relaxed.owl guanosine-containing compound biosynthesis|guanosines anabolism|guanosines biosynthetic process|guanosines formation|guanosines synthesis|guanosine-containing compound synthesis|guanosine-containing compound anabolism|guanosines biosynthesis|guanosine-containing compound formation bf 2012-07-02T01:52:09Z biological_process owl:Class GO:1900162 biolink:NamedThing negative regulation of phospholipid scramblase activity Any process that stops, prevents or reduces the frequency, rate or extent of phospholipid scramblase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of phospholipid scramblase activity|inhibition of phospholipid scramblase activity|down-regulation of phospholipid scramblase activity|down regulation of phospholipid scramblase activity rph 2012-03-08T10:57:23Z biological_process owl:Class GO:1905093 biolink:NamedThing cellular response to diosgenin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diosgenin stimulus. tmpzr1t_l9r_go_relaxed.owl bc 2016-03-31T11:04:38Z biological_process owl:Class GO:0032887 biolink:NamedThing regulation of spindle elongation Any process that modulates the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the spindle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014739 biolink:NamedThing positive regulation of muscle hyperplasia Any process that activates or increases the frequency, rate or extent of muscle hyperplasia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140042 biolink:NamedThing lipid droplet formation A process that results in the assembly, arrangement of constituent parts of a lipid droplet. tmpzr1t_l9r_go_relaxed.owl lipid body formation|lipid particle formation|adiposome formation pg 2017-06-19T09:18:43Z biological_process owl:Class GO:0015735 biolink:NamedThing uronic acid transmembrane transport The process in which uronic acid is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl uronic acid transport biological_process owl:Class GO:0045904 biolink:NamedThing negative regulation of translational termination Any process that stops, prevents, or reduces the frequency, rate or extent of translational termination. tmpzr1t_l9r_go_relaxed.owl downregulation of translational termination|inhibition of translational termination|down-regulation of translational termination|down regulation of translational termination biological_process owl:Class GO:1901725 biolink:NamedThing regulation of histone deacetylase activity Any process that modulates the frequency, rate or extent of histone deacetylase activity. tmpzr1t_l9r_go_relaxed.owl rl 2013-01-07T09:14:12Z biological_process owl:Class GO:0045477 biolink:NamedThing regulation of nurse cell apoptotic process Any process that modulates the frequency, rate or extent of nurse cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of nurse cell apoptosis biological_process owl:Class GO:0098949 biolink:NamedThing intrinsic component of postsynaptic endosome membrane The component of the postsynaptic endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic endosome membrane cellular_component owl:Class GO:0099125 biolink:NamedThing PAK family kinase-Sog2 complex A protein kinase complex comprising a conserved PAK/GC/Ste20 family kinase, leucine rich repeat protein Sog2 family, which function as part of the cell shape network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047471 biolink:NamedThing maltose alpha-D-glucosyltransferase activity Catalysis of the reaction: maltose = trehalose. tmpzr1t_l9r_go_relaxed.owl maltose alpha-D-glucosylmutase activity|maltose glucosylmutase activity|trehalose synthase activity MetaCyc:5.4.99.16-RXN|RHEA:15145|EC:5.4.99.16 molecular_function owl:Class GO:0061526 biolink:NamedThing acetylcholine secretion The regulated release of acetylcholine by a cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:40:39Z biological_process owl:Class GO:0072343 biolink:NamedThing pancreatic stellate cell proliferation The multiplication or reproduction of pancreatic stellate cells, resulting in the expansion of a pancreatic stellate cell population. Pancreatic stellate cells are found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and have long cytoplasmic processes that encircle the base of the acinus. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-05T03:04:50Z biological_process owl:Class GO:0004377 biolink:NamedThing GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity Catalysis of the reaction: an alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + 2 GDP-alpha-D-mannose = an alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + 2 GDP + 2 H+. This reaction is the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->2)-D-mannosyl-D-mannose linkage. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase activity|GDP-D-mannose:D-Man-alpha-(1->3)-[D-Man-alpha-(1->6)]-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-1,2-mannosyltransferase activity|oligosaccharide-lipid mannosyltransferase activity|GDP-mannose-oligosaccharide-lipid mannosyltransferase activity|glycolipid 2-alpha-mannosyltransferase activity|guanosine diphosphomannose-oligosaccharide-lipid mannosyltransferase activity RHEA:29523|EC:2.4.1.131|MetaCyc:2.4.1.131-RXN molecular_function owl:Class GO:0010422 biolink:NamedThing regulation of brassinosteroid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of brassinosteroids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046467 biolink:NamedThing membrane lipid biosynthetic process The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane. tmpzr1t_l9r_go_relaxed.owl membrane lipid formation|membrane lipid biosynthesis|membrane lipid anabolism|membrane lipid synthesis biological_process owl:Class GO:0006643 biolink:NamedThing membrane lipid metabolic process The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane. tmpzr1t_l9r_go_relaxed.owl membrane lipid metabolism biological_process owl:Class GO:1901937 biolink:NamedThing beta-caryophyllene biosynthetic process The chemical reactions and pathways resulting in the formation of beta-caryophyllene. tmpzr1t_l9r_go_relaxed.owl beta-caryophyllene formation|beta-caryophyllene synthesis|beta-caryophyllene biosynthesis|beta-caryophyllene anabolism ms 2013-02-18T14:55:18Z biological_process owl:Class GO:0043657 biolink:NamedThing host cell A cell within a host organism. Includes the host plasma membrane and any external encapsulating structures such as the host cell wall and cell envelope. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19800 cellular_component owl:Class GO:0018995 biolink:NamedThing host cellular component Any cellular component of a host cell. The host is an organism in which another organism, for instance a parasite or symbiont, spends part or all of its life cycle and from which it obtains nourishment and/or protection. tmpzr1t_l9r_go_relaxed.owl host organism Wikipedia:Host_(biology) cellular_component owl:Class GO:0003067 biolink:NamedThing circadian regulation of systemic arterial blood pressure by hormone The process in which hormones modulate the force with which blood passes through the circulatory system contributing to different values of blood pressure oscillating with a regularity of approximately 24 hours. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001990 biolink:NamedThing regulation of systemic arterial blood pressure by hormone The process in which hormones modulate the force with which blood passes through the circulatory system. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action. tmpzr1t_l9r_go_relaxed.owl hormonal control of blood pressure|hormonal regulation of blood pressure|blood pressure regulation by hormone biological_process owl:Class GO:0043240 biolink:NamedThing Fanconi anaemia nuclear complex A protein complex composed of the Fanconi anaemia (FA) proteins including A, C, E, G and F (FANCA-F). Functions in the activation of the downstream protein FANCD2 by monoubiquitylation, and is essential for protection against chromosome breakage. tmpzr1t_l9r_go_relaxed.owl FA complex|Fanconi anaemia complex|FA core complex|FA nuclear complex cellular_component owl:Class GO:0004441 biolink:NamedThing inositol-1,4-bisphosphate 1-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol polyphosphate 1-phosphatase activity|inositol-polyphosphate 1-phosphatase activity|1D-myo-inositol-1,4-bisphosphate 1-phosphohydrolase activity RHEA:15553|EC:3.1.3.57|Reactome:R-HSA-1855208|MetaCyc:3.1.3.57-RXN molecular_function owl:Class GO:0016312 biolink:NamedThing inositol bisphosphate phosphatase activity Catalysis of the reaction: myo-inositol bisphosphate + H2O = myo-inositol phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:57840|Reactome:R-HSA-6809565|Reactome:R-HSA-6809561 molecular_function owl:Class GO:0015170 biolink:NamedThing propanediol transmembrane transporter activity Enables the transfer of propanediol from one side of a membrane to the other. Propanediol is a sweet colorless, viscous, hygroscopic liquid used as an antifreeze and in brake fluid; it is also as a humectant in cosmetics and personal care items, although it can be absorbed through the skin with harmful effects. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048621 biolink:NamedThing post-embryonic digestive tract morphogenesis The process, occurring during the post-embryonic phase, by which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed. tmpzr1t_l9r_go_relaxed.owl post-embryonic gut morphogenesis biological_process owl:Class GO:1901517 biolink:NamedThing aspyridone A catabolic process The chemical reactions and pathways resulting in the breakdown of aspyridone A. tmpzr1t_l9r_go_relaxed.owl aspyridone A breakdown|aspyridone A catabolism|aspyridone A degradation di 2012-10-18T18:31:32Z biological_process owl:Class GO:0010338 biolink:NamedThing leaf formation The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060231 biolink:NamedThing mesenchymal to epithelial transition A transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell. tmpzr1t_l9r_go_relaxed.owl epithelial cell differentiation from mesenchymal cell|mesenchymal-epithelial transition biological_process owl:Class GO:0060464 biolink:NamedThing lung lobe formation The developmental process pertaining to the initial formation of a lung lobe from unspecified parts. This process begins with the specific processes that contribute to the appearance of the lobe and ends when the structural rudiment is recognizable. A lung lobe is a projection that extends from the lung. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070374 biolink:NamedThing positive regulation of ERK1 and ERK2 cascade Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. tmpzr1t_l9r_go_relaxed.owl stimulation of ERK1 and ERK2 cascade|positive regulation of ERK cascade|positive regulation of MAPK3 cascade|positive regulation of ERK1 and ERK2 signaling pathway|up-regulation of ERK1 and ERK2 cascade|up regulation of ERK1 and ERK2 cascade|positive regulation of ERK1 and ERK2 signalling pathway|positive regulation of ERK1 cascade|upregulation of ERK1 and ERK2 cascade|activation of ERK1 and ERK2 cascade|positive regulation of ERK2 cascade|positive regulation of MAPK1 cascade|positive regulation of ERK1/2 cascade biological_process owl:Class GO:1902350 biolink:NamedThing cellular response to chloroquine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chloroquine stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2013-08-13T19:29:33Z biological_process owl:Class GO:1902349 biolink:NamedThing response to chloroquine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chloroquine stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2013-08-13T19:29:25Z biological_process owl:Class GO:0031500 biolink:NamedThing Tea1 cell-end complex A high molecular weight complex characterized in S. pombe containing the cell-end anchoring protein Tea1. This complex is transported to the cell ends by microtubules and is involved in bipolar growth and the maintennce of normal cell polarity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051984 biolink:NamedThing positive regulation of chromosome segregation Any process that activates or increases the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets. tmpzr1t_l9r_go_relaxed.owl activation of chromosome segregation|up-regulation of chromosome segregation|stimulation of chromosome segregation|upregulation of chromosome segregation|up regulation of chromosome segregation biological_process owl:Class GO:0051378 biolink:NamedThing serotonin binding Binding to serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine binding molecular_function owl:Class GO:0090714 biolink:NamedThing innate immunity memory response An immune response mediated by the innate immune system and directed against a previously encountered immunologic stimulus, being quicker and quantitatively better compared with the initial response to that stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:23:03Z biological_process owl:Class GO:0070583 biolink:NamedThing spore membrane bending pathway The process in which a bending force is generated in the prospore membrane to form the characteristic curved shape of the prospore. tmpzr1t_l9r_go_relaxed.owl FSM bending|ascospore-type prospore membrane bending|forespore membrane bending mah 2009-04-24T10:48:09Z biological_process owl:Class GO:0006161 biolink:NamedThing deoxyguanosine catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyguanosine catabolism|deoxyguanosine degradation|deoxyguanosine breakdown biological_process owl:Class GO:0042453 biolink:NamedThing deoxyguanosine metabolic process The chemical reactions and pathways involving deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyguanosine metabolism biological_process owl:Class GO:0050949 biolink:NamedThing negative regulation of late stripe melanocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of late stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of late stripe melanocyte differentiation|downregulation of late stripe melanocyte differentiation|negative regulation of late stripe melanophore differentiation|down regulation of late stripe melanocyte differentiation|down-regulation of late stripe melanocyte differentiation biological_process owl:Class GO:1902696 biolink:NamedThing glycine catabolic process to isobutanol The chemical reactions and pathways resulting in the breakdown of glycine to isobutanol. tmpzr1t_l9r_go_relaxed.owl glycine breakdown to isobutanol|glycine catabolism to isobutanol|glycine degradation to isobutanol tb 2014-02-19T18:00:12Z GO:1990293 biological_process owl:Class GO:0009954 biolink:NamedThing proximal/distal pattern formation The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). tmpzr1t_l9r_go_relaxed.owl proximal/distal pattern specification biological_process owl:Class GO:0070236 biolink:NamedThing negative regulation of activation-induced cell death of T cells Any process that stops, prevents, or reduces the frequency, rate or extent of activation-induced cell death of T cells. tmpzr1t_l9r_go_relaxed.owl negative regulation of activation-induced cell death of T lymphocytes|negative regulation of antigen-driven apoptosis|negative regulation of activation-induced cell death of T-lymphocytes|inhibition of activation-induced cell death of T cells|negative regulation of activated T cell apoptosis|down regulation of activation-induced cell death of T cells|negative regulation of activation-induced cell death of T-cells|downregulation of activation-induced cell death of T cells|down-regulation of activation-induced cell death of T cells|negative regulation of AICD biological_process owl:Class GO:0033508 biolink:NamedThing glutamate catabolic process to butyrate The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including butyrate. tmpzr1t_l9r_go_relaxed.owl glutamate degradation to butyrate|glutamate breakdown to butyrate MetaCyc:PWY-5087 biological_process owl:Class GO:0019605 biolink:NamedThing butyrate metabolic process The chemical reactions and pathways involving any butyrate, the anions of butyric acid (butanoic acid), a saturated, unbranched aliphatic acid. tmpzr1t_l9r_go_relaxed.owl butyrate metabolism|butyric acid metabolism|butanoic acid metabolic process|butyric acid metabolic process|butanoic acid metabolism GO:0043437 biological_process owl:Class GO:0046601 biolink:NamedThing positive regulation of centriole replication Any process that activates or increases the frequency, rate or extent of centriole replication. tmpzr1t_l9r_go_relaxed.owl up regulation of centriole replication|stimulation of centriole replication|up-regulation of centriole replication|upregulation of centriole replication|activation of centriole replication biological_process owl:Class GO:0035470 biolink:NamedThing positive regulation of vascular wound healing Any process that increases the rate, frequency, or extent of blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to damaged vasculature. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-22T10:49:09Z biological_process owl:Class GO:0005229 biolink:NamedThing intracellular calcium activated chloride channel activity Enables the transmembrane transfer of chloride by a channel that opens in response to stimulus by a calcium ion or ions. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9659568|Reactome:R-HSA-2684901|Reactome:R-HSA-2744361|Reactome:R-HSA-2744242 molecular_function owl:Class GO:0061778 biolink:NamedThing intracellular chloride channel activity Enables the transmembrane transfer of chloride across the membrane of an intracellular compartment. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl dph 2016-08-02T09:37:15Z molecular_function owl:Class GO:0071611 biolink:NamedThing granulocyte colony-stimulating factor production The appearance of granulocyte colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl lenograstim production|filgrastim production|pluripoietin production|granulocyte colony stimulating factor production|G-CSF production|colony stimulating factor 3 (granulocyte) production|CSF3 production mah 2010-02-05T04:38:11Z biological_process owl:Class GO:0071227 biolink:NamedThing cellular response to molecule of oomycetes origin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin. tmpzr1t_l9r_go_relaxed.owl cellular response to oomycetes associated molecule mah 2009-12-03T01:55:09Z biological_process owl:Class GO:0002240 biolink:NamedThing response to molecule of oomycetes origin Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin. tmpzr1t_l9r_go_relaxed.owl response to oomycetes associated molecule biological_process owl:Class GO:0030740 biolink:NamedThing inositol 3-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + myo-inositol = 1D-3-O-methyl-myo-inositol + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl myo-inositol 1-O-methyltransferase activity|S-adenosyl-L-methionine:myo-inositol 1-O-methyltransferase activity|myo-inositol 1-methyltransferase activity|myo-inositol 1-O-methyltransferase (name based on 1L-numbering system and not 1D-numbering)|S-adenosyl-L-methionine:1D-myo-inositol 3-O-methyltransferase activity|inositol L-1-methyltransferase activity|S-adenosylmethionine:myo-inositol 1-methyltransferase activity RHEA:18877|MetaCyc:MYO-INOSITOL-1-O-METHYLTRANSFERASE-RXN|KEGG_REACTION:R01189|EC:2.1.1.39 molecular_function owl:Class GO:0097445 biolink:NamedThing presynaptic active zone dense projection Electron dense projection extending from the cytomatrix into the cytoplasm on which synaptic vesicles are tethered. tmpzr1t_l9r_go_relaxed.owl pre-synaptic active zone dense projection|active zone dense projection NIF_Subcellular:sao494258938 pr 2012-12-06T14:08:21Z cellular_component owl:Class GO:2001174 biolink:NamedThing negative regulation of histone H2B conserved C-terminal lysine ubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination. tmpzr1t_l9r_go_relaxed.owl negative regulation of budding yeast H2B K123 ubiquitination|negative regulation of fission yeast H2B K119 ubiquitination|negative regulation of mammalian H2B K120 ubiquitination se 2011-10-29T06:28:53Z biological_process owl:Class GO:0033003 biolink:NamedThing regulation of mast cell activation Any process that modulates the frequency, rate, or extent of mast cell activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009521 biolink:NamedThing photosystem A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species. tmpzr1t_l9r_go_relaxed.owl reaction centre|reaction center Wikipedia:Photosystem GO:0030090 cellular_component owl:Class GO:1901933 biolink:NamedThing bicyclogermacrene catabolic process The chemical reactions and pathways resulting in the breakdown of bicyclogermacrene. tmpzr1t_l9r_go_relaxed.owl bicyclogermacrene breakdown|bicyclogermacrene catabolism|bicyclogermacrene degradation ms 2013-02-18T14:54:57Z biological_process owl:Class GO:0051763 biolink:NamedThing sesquiterpene catabolic process The chemical reactions and pathways resulting in the breakdown of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048026 biolink:NamedThing positive regulation of mRNA splicing, via spliceosome Any process that activates or increases the rate or extent of mRNA splicing via a spliceosomal mechanism. tmpzr1t_l9r_go_relaxed.owl up-regulation of nuclear mRNA splicing, via spliceosome|activation of nuclear mRNA splicing, via spliceosome|up regulation of nuclear mRNA splicing via U2-type spliceosome|stimulation of nuclear mRNA splicing via U2-type spliceosome|positive regulation of pre-mRNA splicing|stimulation of nuclear mRNA splicing, via spliceosome|upregulation of nuclear mRNA splicing via U2-type spliceosome|activation of nuclear mRNA splicing via U2-type spliceosome|positive regulation of nuclear mRNA splicing, via spliceosome|positive regulation of nuclear mRNA splicing via U2-type spliceosome|up regulation of nuclear mRNA splicing, via spliceosome|up-regulation of nuclear mRNA splicing via U2-type spliceosome|upregulation of nuclear mRNA splicing, via spliceosome GO:0035057 biological_process owl:Class GO:0046042 biolink:NamedThing ITP biosynthetic process The chemical reactions and pathways resulting in the formation of ITP, inosine triphosphate. tmpzr1t_l9r_go_relaxed.owl ITP biosynthesis|ITP anabolism|ITP synthesis|ITP formation biological_process owl:Class GO:0071638 biolink:NamedThing negative regulation of monocyte chemotactic protein-1 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of monocyte chemotactic protein-1. tmpzr1t_l9r_go_relaxed.owl negative regulation of MCP-1 production|negative regulation of CCL2 production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0060589 biolink:NamedThing nucleoside-triphosphatase regulator activity Binds to and modulates the activity of an NTPase. tmpzr1t_l9r_go_relaxed.owl NTPase regulator activity dph 2009-05-08T02:49:24Z molecular_function owl:Class GO:0050131 biolink:NamedThing N-methyl-L-amino-acid oxidase activity Catalysis of the reaction: an N-methyl-L-amino acid + H2O + O2 = an L-amino acid + formaldehyde + H2O2. tmpzr1t_l9r_go_relaxed.owl N-methyl-L-amino-acid:oxygen oxidoreductase (demethylating)|N-methylamino acid oxidase activity EC:1.5.3.2|RHEA:11472|MetaCyc:N-METHYL-L-AMINO-ACID-OXIDASE-RXN molecular_function owl:Class GO:0019379 biolink:NamedThing sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8). tmpzr1t_l9r_go_relaxed.owl sulphate assimilation, phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase (thioredoxin) MetaCyc:SO4ASSIM-PWY biological_process owl:Class GO:0110127 biolink:NamedThing phloem unloading The process of unloading solutes that are produced in the source tissues, from the sieve tube or companion cell of the phloem into the sink tissues. tmpzr1t_l9r_go_relaxed.owl kmv 2018-09-07T21:33:07Z biological_process owl:Class GO:0010233 biolink:NamedThing phloem transport The directed movement of substances, into, out of or within the phloem during long distance transport between source and sink tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150068 biolink:NamedThing positive regulation of tubulin deacetylase activity Any process that activates or increases the frequency, rate or extent of tubulin deacetylase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-24T10:35:51Z biological_process owl:Class GO:0090044 biolink:NamedThing positive regulation of tubulin deacetylation Any process that increases the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:54:18Z biological_process owl:Class GO:1900339 biolink:NamedThing regulation of methane biosynthetic process from formic acid Any process that modulates the frequency, rate or extent of methane biosynthetic process from formic acid. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:04:53Z biological_process owl:Class GO:0047710 biolink:NamedThing bis(5'-adenosyl)-triphosphatase activity Catalysis of the reaction: P(1),P(3)-bis(5'-adenosyl) triphosphate + H(2)O = ADP + AMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl P1,P3-bis(5'-adenosyl)-triphosphate adenylohydrolase activity|AP(3)Aase activity|AP(3)A hydrolase activity|diadenosine 5',5'''-P(1),P(3)-triphosphate hydrolase activity|dinucleosidetriphosphatase activity|1-P,3-P-bis(5'-adenosyl)-triphosphate adenylohydrolase activity|AP3A hydrolase activity|AP3Aase activity|diadenosine 5',5'''-P1,P3-triphosphate hydrolase activity|diadenosine 5,5-P1,P3-triphosphatase activity MetaCyc:BIS5-ADENOSYL-TRIPHOSPHATASE-RXN|KEGG_REACTION:R00187|RHEA:13893|EC:3.6.1.29 molecular_function owl:Class GO:0048056 biolink:NamedThing R3/R4 cell differentiation The process in which relatively unspecialized cells acquire the specialized features of R3 and R4 photoreceptors. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071626 biolink:NamedThing mastication The process of biting and mashing food with the teeth prior to swallowing. tmpzr1t_l9r_go_relaxed.owl chewing mah 2010-02-10T11:19:48Z biological_process owl:Class GO:0004032 biolink:NamedThing alditol:NADP+ 1-oxidoreductase activity Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl polyol dehydrogenase (NADP(+)) activity|aldehyde reductase activity|aldose reductase activity EC:1.1.1.21|RHEA:12789|MetaCyc:ALDEHYDE-REDUCTASE-RXN|KEGG_REACTION:R02820|Reactome:R-HSA-5652172|Reactome:R-HSA-196060 molecular_function owl:Class GO:0008106 biolink:NamedThing alcohol dehydrogenase (NADP+) activity Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl alcohol:NADP dehydrogenase activity|aldehyde reductase (NADPH) activity|aldehyde reductase (NADPH2) activity|NADP-aldehyde reductase activity EC:1.1.1.2|MetaCyc:ALCOHOL-DEHYDROGENASE-NADP+-RXN|RHEA:15937 molecular_function owl:Class GO:0030037 biolink:NamedThing actin filament reorganization involved in cell cycle The cell cycle process in which rearrangement of the spatial distribution of actin filaments and associated proteins occurs. tmpzr1t_l9r_go_relaxed.owl actin filament reorganization during cell cycle|actin filament reorganisation involved in cell cycle biological_process owl:Class GO:0009629 biolink:NamedThing response to gravity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. tmpzr1t_l9r_go_relaxed.owl response to gravitational stimulus biological_process owl:Class GO:0030997 biolink:NamedThing regulation of centriole-centriole cohesion Any process that modulates the extent to which the two centrioles within a centrosome remain tightly paired; may be mediated by the assembly and disassembly of a proteinaceous linker. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001710 biolink:NamedThing mesodermal cell fate commitment The cell differentiation process that results in commitment of a cell to become part of the mesoderm. tmpzr1t_l9r_go_relaxed.owl mesoderm cell fate commitment biological_process owl:Class GO:0102313 biolink:NamedThing 1,8-cineole synthase activity Catalysis of the reaction: geranyl diphosphate(3-) + H2O <=> 1,8-cineole + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.108|MetaCyc:RXN-12980|RHEA:32543 molecular_function owl:Class GO:0022609 biolink:NamedThing multicellular organism adhesion to substrate The attachment of a multicellular organism to a surface or material. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102703 biolink:NamedThing camphene synthase activity Catalysis of the reaction: geranyl diphosphate <=> (-)-camphene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:25484|MetaCyc:RXN-5142|EC:4.2.3.117 molecular_function owl:Class GO:0003955 biolink:NamedThing NAD(P)H dehydrogenase (quinone) activity Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. tmpzr1t_l9r_go_relaxed.owl azoreductase activity|quinone reductase activity|NADH-menadione reductase activity|menadione reductase activity|NAD(P)H menadione reductase activity|reduced nicotinamide-adenine dinucleotide (phosphate) dehydrogenase activity|NAD(P)H: menadione oxidoreductase activity|reduced NAD(P)H dehydrogenase activity|dehydrogenase, reduced nicotinamide adenine dinucleotide (phosphate, quinone) activity|NQO1|vitamin K reductase activity|naphthoquinone reductase activity|NAD(P)H dehydrogenase activity|QR1|NAD(P)H(2) dehydrogenase (quinone) activity|p-benzoquinone reductase activity|phylloquinone reductase activity|NAD(P)H-quinone oxidoreductase activity|diaphorase activity|NAD(P)H:quinone oxidoreductase activity|NAD(P)H:(quinone-acceptor)oxidoreductase activity|menadione oxidoreductase activity|flavoprotein NAD(P)H-quinone reductase activity|NAD(P)H2 dehydrogenase (quinone)|DT-diaphorase activity|NAD(P)H-quinone dehydrogenase activity|vitamin-K reductase activity|viologen accepting pyridine nucleotide oxidoreductase activity UM-BBD_reactionID:r0227|MetaCyc:NQOR-RXN|EC:1.6.5.2 molecular_function owl:Class GO:1901852 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of 7,8-didemethyl-8-hydroxy-5-deazariboflavin. tmpzr1t_l9r_go_relaxed.owl coenzyme F0 biosynthesis|coenzyme F0 anabolism|coenzyme F0 biosynthetic process|7,8-didemethyl-8-hydroxy-5-deazariboflavin formation|7,8-didemethyl-8-hydroxy-5-deazariboflavin biosynthesis|coenzyme F0 formation|7,8-didemethyl-8-hydroxy-5-deazariboflavin synthesis|coenzyme F0 synthesis|7,8-didemethyl-8-hydroxy-5-deazariboflavin anabolism yaf 2013-01-28T11:38:41Z biological_process owl:Class GO:0052659 biolink:NamedThing inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl type I inositol-polyphosphate phosphatase activity|Ins(1,3,4,5)P(4) 5-phosphatase activity|D-myo-inositol (1,3,4,5)-polyphosphate 5-phosphatase activity|inositol polyphosphate-5-phosphatase activity|type II inositol polyphosphate 5-phosphatase activity|5PTase activity|Ins(1,3,4,5)P4 5-phosphatase activity Reactome:R-HSA-1855218|EC:3.1.3.56|Reactome:R-HSA-1855213|RHEA:11392|MetaCyc:RXN-8730|KEGG_REACTION:R03430 molecular_function owl:Class GO:1990339 biolink:NamedThing laminin-522 complex A laminin complex composed of alpha5, beta2 and gamma2 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-522 bhm 2014-03-20T23:41:32Z cellular_component owl:Class GO:0005705 biolink:NamedThing polytene chromosome interband A stretch of less tightly packed chromatin along the polytene chromosome, found between bands. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010253 biolink:NamedThing UDP-rhamnose biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-rhamnose synthesis|UDP-rhamnose biosynthesis|UDP-rhamnose formation|UDP-rhamnose anabolism MetaCyc:PWY-3261 biological_process owl:Class GO:0035590 biolink:NamedThing purinergic nucleotide receptor signaling pathway The series of molecular signals generated as a consequence of a receptor binding to an extracellular purine nucleotide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl purinoceptor signaling pathway|purinergic nucleotide receptor signalling pathway|purinergic receptor signaling pathway|purinergic receptor signalling pathway|P2 receptor signaling pathway bf 2010-10-22T11:09:40Z GO:0035587 biological_process owl:Class GO:0003059 biolink:NamedThing positive regulation of the force of heart contraction by epinephrine The process in which the secretion of epinephrine into the bloodstream or released from nerve endings modulates the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart contraction by adrenaline|adrenaline cardiac inotropy|adrenaline regulation of the strength of heart muscle contraction|increased force of heart contraction by epinephrine|positive regulation of heart contraction by epinephrine|epinephrine cardiac inotropy biological_process owl:Class GO:0044061 biolink:NamedThing modulation by symbiont of host excretion The alteration by a symbiont organism of the functioning of excretion, the elimination by the host organism of the waste products that arise as a result of metabolic activity. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host excretion biological_process owl:Class GO:0071489 biolink:NamedThing cellular response to red or far red light Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:18:25Z biological_process owl:Class GO:2001118 biolink:NamedThing tetrahydromethanopterin biosynthetic process The chemical reactions and pathways resulting in the formation of a tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl tetrahydromethanopterin biosynthesis jl 2011-10-11T12:13:19Z biological_process owl:Class GO:0019584 biolink:NamedThing galactonate catabolic process The chemical reactions and pathways resulting in the breakdown of galactonate, the anion of galactonic acid. tmpzr1t_l9r_go_relaxed.owl galactonate catabolism|galactonate breakdown|galactonate degradation MetaCyc:GALACTCAT-PWY biological_process owl:Class GO:1903636 biolink:NamedThing regulation of protein insertion into mitochondrial outer membrane Any process that modulates the frequency, rate or extent of protein insertion into mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein transport into mitochondrial outer membrane|regulation of mitochondrial outer membrane protein import|regulation of protein import into mitochondrial outer membrane pga 2014-11-20T15:54:44Z biological_process owl:Class GO:0061031 biolink:NamedThing endodermal digestive tract morphogenesis The process in which the anatomical structures of the endodermal digestive tract are generated and organized. The endodermal digestive tract includes those portions of the digestive tract that are derived from endoderm. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T09:46:43Z biological_process owl:Class GO:1901131 biolink:NamedThing kanamycin metabolic process The chemical reactions and pathways involving kanamycin. tmpzr1t_l9r_go_relaxed.owl kanamycin metabolism yaf 2012-07-11T03:27:04Z biological_process owl:Class GO:0014708 biolink:NamedThing regulation of somitomeric trunk muscle development Any process that modulates the frequency, rate or extent of somitomeric trunk muscle development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048634 biolink:NamedThing regulation of muscle organ development Any process that modulates the frequency, rate or extent of muscle development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010672 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as part of the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of meiosis by regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter, meiotic mah 2012-04-20T02:45:12Z GO:1900401 biological_process owl:Class GO:0061875 biolink:NamedThing negative regulation of hepatic stellate cell contraction Any process that modulates stops, prevents, or reduces the frequency, rate or extent of hepatic stellate cell contraction. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:31:42Z biological_process owl:Class GO:0043837 biolink:NamedThing valine dehydrogenase (NAD) activity Catalysis of the reaction: L-valine + H2O + NAD+ = 3-methyl-2-oxobutanoate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl ValDH EC:1.4.1.23|RHEA:30763 molecular_function owl:Class GO:0051351 biolink:NamedThing positive regulation of ligase activity Any process that activates or increases the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl upregulation of ligase activity|activation of ligase activity|up-regulation of ligase activity|ligase activator|stimulation of ligase activity|up regulation of ligase activity biological_process owl:Class GO:0097472 biolink:NamedThing cyclin-dependent protein kinase activity Cyclin-dependent catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. tmpzr1t_l9r_go_relaxed.owl This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). pr 2013-03-06T13:46:04Z molecular_function owl:Class GO:0120027 biolink:NamedThing regulation of osmosensory signaling pathway Any process that modulates the frequency, rate or extent of osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2017-03-31T14:45:01Z biological_process owl:Class GO:0010222 biolink:NamedThing stem vascular tissue pattern formation Vascular tissue pattern formation as it occurs in the stem of vascular plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010051 biolink:NamedThing xylem and phloem pattern formation The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl vascular tissue pattern formation biological_process owl:Class GO:0052850 biolink:NamedThing NADPH-dependent dihydrocurcumin reductase activity Catalysis of the reaction: dihydrocurcumin + NADPH+ + H+ = tetrahydrocurcumin + NADP+. tmpzr1t_l9r_go_relaxed.owl dihydrocurcumin reductase (NADPH) activity MetaCyc:RXN0-6677 ai 2011-12-05T11:04:23Z molecular_function owl:Class GO:0034252 biolink:NamedThing negative regulation of cellular amide catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides. tmpzr1t_l9r_go_relaxed.owl negative regulation of amide breakdown|negative regulation of amide catabolism|negative regulation of amide degradation biological_process owl:Class GO:0034251 biolink:NamedThing regulation of cellular amide catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides. tmpzr1t_l9r_go_relaxed.owl regulation of amide breakdown|regulation of amide degradation|regulation of amide catabolism biological_process owl:Class GO:0034307 biolink:NamedThing regulation of ascospore formation Any process that modulates the frequency, rate or extent of ascospore formation. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade during sporulation biological_process owl:Class GO:0007532 biolink:NamedThing regulation of mating-type specific transcription, DNA-templated Any mating-type specific process that modulates the frequency, rate or extent of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl regulation of mating-type specific transcription, DNA-dependent|mating-type specific transcriptional control biological_process owl:Class GO:0031407 biolink:NamedThing oxylipin metabolic process The chemical reactions and pathways involving any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl oxylipin metabolism biological_process owl:Class GO:0006452 biolink:NamedThing translational frameshifting A mechanism whereby different proteins may result from a single mRNA molecule, due to a change in the parsing of three nucleotides per codon relative to an initiating AUG codon. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Translational_frameshift biological_process owl:Class GO:0033433 biolink:NamedThing AUU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AUU codon. tmpzr1t_l9r_go_relaxed.owl isoleucine tRNA|ATT codon-amino acid adaptor activity Note that in the standard genetic code, ATT codes for isoleucine. molecular_function owl:Class GO:1990174 biolink:NamedThing phosphodiesterase decapping endonuclease activity Catalysis of the removal of the cap from an unmethylated 5'-end capped RNA resulting in the release of the entire cap structure (GpppN) and a 5' monophosphorylated RNA. tmpzr1t_l9r_go_relaxed.owl G(5')pppN pyrophosphatase activity tb 2013-08-26T17:51:00Z molecular_function owl:Class GO:0010080 biolink:NamedThing regulation of floral meristem growth Any process involved in maintaining the size and shape of a floral meristem. tmpzr1t_l9r_go_relaxed.owl regulation of floral meristem size biological_process owl:Class GO:0031388 biolink:NamedThing organic acid phosphorylation The process of introducing one or more phosphate groups into an organic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001085 biolink:NamedThing arabinogalactan binding Binding to arabinogalactan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:35:51Z molecular_function owl:Class GO:0018126 biolink:NamedThing protein hydroxylation The addition of a hydroxy group to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid hydroxylation biological_process owl:Class GO:1905021 biolink:NamedThing regulation of threonine-tRNA ligase activity Any process that modulates the frequency, rate or extent of threonine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of threonyl-tRNA synthetase activity|regulation of threonine-transfer ribonucleate synthetase activity|regulation of threonine translase activity|regulation of L-threonine:tRNAThr ligase (AMP-forming)|regulation of threonyl-transfer RNA synthetase activity|regulation of threonyl-transfer ribonucleic acid synthetase activity|regulation of threonyl ribonucleic synthetase activity|regulation of TRS|regulation of threonyl-transfer ribonucleate synthetase activity sl 2016-03-03T19:12:23Z biological_process owl:Class GO:0010497 biolink:NamedThing plasmodesmata-mediated intercellular transport The movement of substances between cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. tmpzr1t_l9r_go_relaxed.owl plasmodesma-mediated cell-to-cell transport|plasmodesmata-mediated cell-to-cell transport|single organism plasmodesmata-mediated intercellular transport|plasmodesma-mediated intercellular transport|single-organism plasmodesmata-mediated intercellular transport jl 2013-12-19T13:37:36Z GO:1902587 biological_process owl:Class GO:0010496 biolink:NamedThing intercellular transport The movement of substances between cells. tmpzr1t_l9r_go_relaxed.owl single-organism intercellular transport|single organism intercellular transport jl 2013-12-19T13:24:56Z GO:1902585 biological_process owl:Class GO:0102809 biolink:NamedThing delphinidin 3-O-glucoside 2''-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + delphinidin 3-O-beta-D-glucoside <=> H+ + delphinidin 3-O-sophoroside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8178 molecular_function owl:Class GO:0036499 biolink:NamedThing PERK-mediated unfolded protein response A series of molecular signals mediated by the endoplasmic reticulum membrane stress sensor PERK (PKR-like ER kinase). Begins with activation of PERK in response to endoplasmic reticulum (ER) stress and ends with regulation of a downstream cellular process, e.g. transcription. The main substrate of PERK is the translation initiation factor eIF2alpha. Serine-phosphorylation of eIF2alpha by PERK inactivates eIF2alpha and inhibits general protein translation. In addition, eIF2alpha phosphorylation preferentially increases the translation of selective mRNAs such as ATF4 (activating transcription factor 4), which up regulates a subset of UPR genes required to restore folding capacity. tmpzr1t_l9r_go_relaxed.owl PKR-like ER kinase signal transduction|UPR signaling by PERK stress sensor|PERK branch of UPR|PERK signaling in response to endoplasmic reticulum stress|eukaryotic translation initiation factor 2-alpha kinase 3-mediated unfolded protein response|endoplasmic reticulum unfolded protein response; PERK signaling|EIF2AK3-mediated unfolded protein response|PERK signal transduction pathway bf 2015-02-05T13:17:43Z biological_process owl:Class GO:0031587 biolink:NamedThing positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity Any process that activates or increases the frequency, rate or extent of the activity of the inositol 1,4,5-trisphosphate-sensitive calcium-release channel. tmpzr1t_l9r_go_relaxed.owl up regulation of IP3 receptor activity|upregulation of IP3 receptor activity|activation of IP3 receptor activity|positive regulation of inositol-1,4,5-trisphosphate receptor activity|up-regulation of IP3 receptor activity|stimulation of IP3 receptor activity|positive regulation of IP3 receptor activity biological_process owl:Class GO:2001187 biolink:NamedThing positive regulation of CD8-positive, alpha-beta T cell activation Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-03T01:17:02Z biological_process owl:Class GO:0045578 biolink:NamedThing negative regulation of B cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of B cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of B cell development|negative regulation of B-cell differentiation|down-regulation of B cell differentiation|negative regulation of B-lymphocyte differentiation|inhibition of B cell differentiation|down regulation of B cell differentiation|negative regulation of B lymphocyte differentiation|downregulation of B cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0071033 biolink:NamedThing nuclear retention of pre-mRNA at the site of transcription The process involved in retention of aberrant or improperly formed mRNAs, e.g. those that are incorrectly or incompletely spliced or that have incorrectly formed 3'-ends, within the nucleus at the site of transcription. tmpzr1t_l9r_go_relaxed.owl krc 2009-07-28T04:35:54Z biological_process owl:Class GO:0097213 biolink:NamedThing regulation of lysosomal membrane permeability Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl regulation of lysosome membrane permeability pr 2012-01-12T10:19:44Z biological_process owl:Class GO:0051095 biolink:NamedThing regulation of helicase activity Any process that modulates the frequency, rate or extent of helicase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045807 biolink:NamedThing positive regulation of endocytosis Any process that activates or increases the frequency, rate or extent of endocytosis. tmpzr1t_l9r_go_relaxed.owl upregulation of endocytosis|stimulation of endocytosis|up-regulation of endocytosis|up regulation of endocytosis|activation of endocytosis biological_process owl:Class GO:0016504 biolink:NamedThing peptidase activator activity Binds to and increases the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. tmpzr1t_l9r_go_relaxed.owl protease activator activity Reactome:R-HSA-168865 molecular_function owl:Class GO:2000883 biolink:NamedThing positive regulation of starch catabolic process Any process that activates or increases the frequency, rate or extent of starch catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of starch breakdown|positive regulation of starch catabolism|positive regulation of starch degradation bf 2011-07-27T03:23:51Z biological_process owl:Class GO:2000906 biolink:NamedThing positive regulation of starch metabolic process Any process that activates or increases the frequency, rate or extent of starch metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of starch metabolism tb 2011-07-28T11:33:19Z biological_process owl:Class GO:0019885 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class I The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class I|antigen presentation, endogenous peptide antigen|antigen processing, endogenous antigen via MHC class I|antigen processing, endogenous antigen via major histocompatibility complex class I GO:0048004 biological_process owl:Class GO:0032325 biolink:NamedThing molybdopterin cofactor catabolic process The chemical reactions and pathways resulting in the breakdown of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043326 biolink:NamedThing chemotaxis to folate The directed movement of a motile cell or organism in response to the presence of folate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009261 biolink:NamedThing ribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleotide catabolism|ribonucleotide degradation|ribonucleotide breakdown biological_process owl:Class GO:0051966 biolink:NamedThing regulation of synaptic transmission, glutamatergic Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009381 biolink:NamedThing excinuclease ABC activity Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid at sites flanking regions of damaged DNA to which the Uvr ABC excinuclease complexes bind. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010037 biolink:NamedThing response to carbon dioxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046097 biolink:NamedThing deoxyuridine biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyuridine biosynthesis|deoxyuridine formation|deoxyuridine anabolism|deoxyuridine synthesis biological_process owl:Class GO:1901742 biolink:NamedThing 2-deoxystreptamine metabolic process The chemical reactions and pathways involving 2-deoxystreptamine. tmpzr1t_l9r_go_relaxed.owl 2-deoxystreptamine metabolism yaf 2013-01-14T10:01:57Z biological_process owl:Class GO:0045322 biolink:NamedThing unmethylated CpG binding Binding to uan nmethylated CpG motif. Unmethylated CpG dinucleotides are often associated with gene promoters. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015174 biolink:NamedThing basic amino acid transmembrane transporter activity Enables the transfer of basic amino acids from one side of a membrane to the other. Basic amino acids have side chains with a positive charge at pH 7.3. tmpzr1t_l9r_go_relaxed.owl basic amino acid transporter activity|basic amino acid permease activity|cationic amino acid transmembrane transporter activity Reactome:R-HSA-8932851|Reactome:R-HSA-8959781 GO:0005286|GO:0015326 molecular_function owl:Class GO:0039529 biolink:NamedThing RIG-I signaling pathway Any series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) RIG-1 (also known as DDX58) binding to viral RNA. RIG-I detects RNA synthesized during active viral replication and triggers a signaling pathway to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. tmpzr1t_l9r_go_relaxed.owl RIG-I signalling pathway|retinoic acid inducible gene I signaling pathway|DDX58 signaling pathway The apoptosis effect triggered by the RIG-I signaling pathway is inconclusive and may represent an in-vitro phenomenon. Therefore, in GO the term 'RIG-I signaling pathway ; GO:0039529' is positioned under 'regulation of cytokine production' as this is its primary effect. bf 2011-12-20T03:11:06Z biological_process owl:Class GO:0039528 biolink:NamedThing cytoplasmic pattern recognition receptor signaling pathway in response to virus Any series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm. Cytosolic PRRs such as RIG-I (DDX58) and MDA-5 (IFIH1) detect RNA synthesized during active viral replication and trigger a signaling pathway to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. tmpzr1t_l9r_go_relaxed.owl RIG-I/MDA5 signaling pathway|cytoplasmic caspase-recruiting domain (CARD) helicase signaling pathway|RIG-I-like receptor (RLR) signaling pathway|RLR signaling pathway|cytoplasmic pattern recognition receptor signalling pathway in response to virus|RLH signaling pathway|RIG-like helicase signaling pathway|RIG-like receptor signaling pathway|virus-induced cytoplasmic pattern recognition receptor signaling pathway This term should be used for annotation when it is not known which cytoplasmic pattern recognition receptor (PRR) has detected the viral RNA. If the PRR is known, consider instead the child terms. The RIG-like family is composed of at least RIG-I (retinoic acid inducible gene I; also known as DDX58), melanoma differentiation-associated gene 5 (MDA5; also known as helicard or IFIH1) and LGP2. bf 2011-12-20T02:43:15Z biological_process owl:Class GO:0044628 biolink:NamedThing positive regulation of complement activation, classical pathway in other organism Any process that activates or increases the frequency, rate or extent of complement activation by the classical pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T01:00:10Z biological_process owl:Class GO:0034138 biolink:NamedThing toll-like receptor 3 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 3. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 3 signalling pathway|TLR3 signaling pathway biological_process owl:Class GO:0102433 biolink:NamedThing phenylalanine 4-hydroxylase (N10-formyl-tetrahydrofolate dependent) activity Catalysis of the reaction: L-phenylalanine + O2 + an N10-formyl-tetrahydrofolate <=> L-tyrosine + a 10-formyltetrahydrofolate-4a-carbinolamine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13907 molecular_function owl:Class GO:0016714 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced pteridine and one other donor, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.16.- molecular_function owl:Class GO:0120157 biolink:NamedThing PAR polarity complex A protein kinase complex that is required for the establishment of a cell polarity axis during the cell division cycle. Binds directly to activated CDC42 GTPase and is required for orchestrating a cellular gradient of CDC42. In S. cerevisiae components are: BEM1, CDC24 and CLA4; from worms to vertebrates it contains a PAR6 protein, PAR3 protein and an atypical PKC. tmpzr1t_l9r_go_relaxed.owl Cdc42p GEF-PAK complex|BEM1-CDC24-CLA4 complex|apical polarity complex|PAR3-PAR6-atypical PKC|PAR3/PAR6/aPKC|PAR6-PAR3-aPKC complex "This tripartite complex named PAR6/PAR3/aPKC is conserved from worms to vertebrates" (PMID:18005931). In yeast, the components are BEM1, CDC24, and CLA4. krc 2018-05-11T15:41:30Z cellular_component owl:Class GO:0016328 biolink:NamedThing lateral plasma membrane The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018013 biolink:NamedThing N-terminal peptidyl-glycine methylation The methylation of the N-terminal glycine of proteins to form the derivative N-methylglycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0063 biological_process owl:Class GO:0140442 biolink:NamedThing peroxide sensor activity Binding to hydrogen peroxide (H2O2) and eliciting a change in the protein's activity in response to the intracellular level of that small molecule. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19126 pg 2020-03-24T09:09:43Z molecular_function owl:Class GO:0002556 biolink:NamedThing serotonin secretion by basophil The regulated release of serotonin by a basophil or group of basophils. tmpzr1t_l9r_go_relaxed.owl serotonin release by basophil biological_process owl:Class GO:0051403 biolink:NamedThing stress-activated MAPK cascade A series of molecular signals in which a stress-activated MAP kinase cascade relays one or more of the signals; MAP kinase cascades involve at least three protein kinase activities and culminate in the phosphorylation and activation of a MAP kinase. tmpzr1t_l9r_go_relaxed.owl p38 cascade|p38 MAPK signalling|stress-activated MAPK signaling pathway|stress-activated MAPKKK cascade|stress-activated MAPKKK signaling pathway|MAPK14 cascade|MAPK11 cascade|stress-activated MAPKKK signalling pathway|stress-activated MAPK signalling pathway|p38 MAPK signaling|MAPK12 cascade|SAPK cascade|MAPK13 cascade biological_process owl:Class GO:0060501 biolink:NamedThing positive regulation of epithelial cell proliferation involved in lung morphogenesis Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung attaining its shape. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071548 biolink:NamedThing response to dexamethasone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus. tmpzr1t_l9r_go_relaxed.owl response to dexamethasone stimulus mah 2010-01-13T01:24:40Z biological_process owl:Class GO:0070536 biolink:NamedThing protein K63-linked deubiquitination A protein deubiquitination process in which a K63-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901596 biolink:NamedThing response to reversine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reversine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T17:17:01Z biological_process owl:Class GO:0009802 biolink:NamedThing cinnamic acid ester biosynthetic process The chemical reactions and pathways resulting in the formation of ester derivatives of cinnamic acid, phenylpropenoic acid. tmpzr1t_l9r_go_relaxed.owl cinnamylic acid ester biosynthesis|cinnamylic acid ester biosynthetic process|phenylacrylic acid ester biosynthesis|cinnamic acid ester synthesis|cinnamic acid ester formation|phenylacrylic acid ester biosynthetic process|cinnamic acid ester biosynthesis|cinnamic acid ester anabolism biological_process owl:Class GO:0010588 biolink:NamedThing cotyledon vascular tissue pattern formation Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099062 biolink:NamedThing integral component of postsynaptic early endosome membrane The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010623 biolink:NamedThing programmed cell death involved in cell development The activation of endogenous cellular processes that result in the death of a cell as part of its development. tmpzr1t_l9r_go_relaxed.owl developmental programmed cell death|programmed cell death involved in development This process is part of the natural developmental program of some cell types, but it does not always happen as part of the development or shaping of a gross anatomical structure. biological_process owl:Class GO:0005921 biolink:NamedThing gap junction A cell-cell junction composed of pannexins or innexins and connexins, two different families of channel-forming proteins. tmpzr1t_l9r_go_relaxed.owl communicating junction|zonula communicans|intercellular gap junction channel|electrotonic synapse|electrical synapse|gap junction plaque|macula communicans|gap junction macula Wikipedia:Gap_junction|NIF_Subcellular:sao118541872 cellular_component owl:Class GO:0098930 biolink:NamedThing axonal transport The directed movement of organelles or molecules along microtubules in axons. tmpzr1t_l9r_go_relaxed.owl axoplasmic transport|axon cargo transport Wikipedia:Axoplasmic_transport biological_process owl:Class GO:0072658 biolink:NamedThing maintenance of protein location in membrane Any process in which a protein is maintained in a specific location in a membrane, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:39:41Z biological_process owl:Class GO:0034128 biolink:NamedThing negative regulation of MyD88-independent toll-like receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of MyD88-independent toll-like receptor signalling pathway|negative regulation of MyD88-independent TLR signaling pathway biological_process owl:Class GO:0044676 biolink:NamedThing formyl-methanofuran dehydrogenase (molybdenum enzyme) complex A protein complex consisting of three polypeptides which also contains molybdenum, a molybdopterin guanine dinucleotide and iron-sulfur clusters. This protein complex catalyzes the reversible conversion of CO2 and methanofuran to formylmethanofuran during methanogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-09T10:56:51Z cellular_component owl:Class GO:0070342 biolink:NamedThing brown fat cell proliferation The multiplication or reproduction of brown fat cells by cell division, resulting in the expansion of their population. A brown fat cell is a fat cell found the thermogenic form of adipose tissue found in newborns of many species. tmpzr1t_l9r_go_relaxed.owl brown adipocyte proliferation|brown adipose cell proliferation biological_process owl:Class GO:0002257 biolink:NamedThing negative regulation of kinin cascade Any process that stops, prevents, or reduces the frequency, rate, or extent of the kinin cascade. tmpzr1t_l9r_go_relaxed.owl down regulation of kinin cascade|inhibition of kinin cascade|down-regulation of kinin cascade|downregulation of kinin cascade biological_process owl:Class GO:0106155 biolink:NamedThing peptidyl-lysine 3-dioxygenase activity Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 3-hydroxy-L-lysine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl EC:1.14.11.63|RHEA:57152 hjd 2018-11-15T20:09:45Z molecular_function owl:Class GO:1902266 biolink:NamedThing cellular abscisic acid homeostasis Any biological process involved in the maintenance of an internal steady state of abscisic acid at the level of the cell. tmpzr1t_l9r_go_relaxed.owl cellular ABA homeostasis|cellular 2-cis-abscisate homeostasis tb 2013-06-27T21:05:36Z biological_process owl:Class GO:1902265 biolink:NamedThing abscisic acid homeostasis Any process involved in the maintenance of an internal steady state of abscisic acid within an organism or cell. tmpzr1t_l9r_go_relaxed.owl 2-cis-abscisate homeostasis|ABA homeostasis tb 2013-06-27T21:05:30Z biological_process owl:Class GO:0032065 biolink:NamedThing maintenance of protein location in cell cortex A process in which a protein or protein complex is maintained in a specific location in the cell cortex. tmpzr1t_l9r_go_relaxed.owl cortical protein anchoring biological_process owl:Class GO:0002028 biolink:NamedThing regulation of sodium ion transport Any process that modulates the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of sodium transport|regulation of Na+ transport biological_process owl:Class GO:0106021 biolink:NamedThing negative regulation of vesicle docking Any process that stops, prevents, or reduces the frequency, rate or extent of vesicle docking. tmpzr1t_l9r_go_relaxed.owl negative regulation of vesicle to membrane docking hjd 2017-05-16T14:05:29Z biological_process owl:Class GO:0033459 biolink:NamedThing GAA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GAA codon. tmpzr1t_l9r_go_relaxed.owl glutamic acid tRNA Note that in the standard genetic code, GAA codes for glutamic acid. molecular_function owl:Class GO:0097273 biolink:NamedThing creatinine homeostasis Any biological process involved in the maintenance of an internal steady state of creatinine. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-22T02:52:50Z biological_process owl:Class GO:0033451 biolink:NamedThing GUA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GUA codon. tmpzr1t_l9r_go_relaxed.owl valine tRNA|GTA codon-amino acid adaptor activity Note that in the standard genetic code, GTA codes for valine. molecular_function owl:Class GO:0070385 biolink:NamedThing egasyn-beta-glucuronidase complex A protein complex that contains beta-glucuronidase and the carboxyl esterase egasyn; formation of the complex causes beta-glucuronidase to be retained in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072258 biolink:NamedThing metanephric interstitial fibroblast differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the interstitial fibroblasts of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl metanephros interstitial cell differentiation mah 2010-03-19T04:17:32Z biological_process owl:Class GO:0010202 biolink:NamedThing response to low fluence red light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Low fluence red light is defined in this case as short pulses of red light followed by darkness, providing a light level of 0.001-0.1 mmol/m2/sec. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035830 biolink:NamedThing palmatine metabolic process The chemical reactions and pathways involving palmatine, a berberine alkaloid found in many plants. tmpzr1t_l9r_go_relaxed.owl palmatine metabolism bf 2011-05-04T03:04:38Z biological_process owl:Class GO:0072345 biolink:NamedThing NAADP-sensitive calcium-release channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens when nicotinic acid adenine dinucleotide phosphate (NAADP) has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2685505 mah 2010-11-10T01:03:35Z molecular_function owl:Class GO:1903415 biolink:NamedThing flavonoid transport from endoplasmic reticulum to plant-type vacuole The directed movement of flavonoid from endoplasmic reticulum to plant-type vacuole. tmpzr1t_l9r_go_relaxed.owl flavonoid accumulation in vacuole tb 2014-09-05T00:35:34Z biological_process owl:Class GO:0045209 biolink:NamedThing MAPK phosphatase export from nucleus, leptomycin B sensitive Leptomycin B-sensitive movement of a MAPK phosphatase from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase-nucleus export, leptomycin B sensitive|leptomycin B-sensitive MAPK phosphatase transport from nucleus to cytoplasm|MAPK phosphatase export out of nucleus, leptomycin B sensitive|leptomycin B-sensitive MAPK phosphatase-nucleus export|MAPK phosphatase transport from nucleus to cytoplasm, leptomycin B sensitive|leptomycin B-sensitive MAPK phosphatase export out of nucleus|MAPK phosphatase export from cell nucleus, leptomycin B sensitive biological_process owl:Class GO:0045208 biolink:NamedThing MAPK phosphatase export from nucleus The directed movement of a MAPK phosphatase from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase-nucleus export|MAPK phosphatase export from cell nucleus|MAPK phosphatase export out of nucleus|MAPK phosphatase transport from nucleus to cytoplasm biological_process owl:Class GO:0018936 biolink:NamedThing anaerobic nitrilotriacetate metabolic process The chemical reactions and pathways involving nitrilotriacetate, the aminotricarboxylic acid N(CH2COO-)3, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic nitrilotriacetate metabolism biological_process owl:Class GO:0060309 biolink:NamedThing elastin catabolic process The chemical reactions and pathways resulting in the breakdown of elastin. Elastin is a glycoprotein which is randomly coiled and crosslinked to form elastic fibers that are found in connective tissue. tmpzr1t_l9r_go_relaxed.owl elastin breakdown|elastin catabolism|elastin degradation biological_process owl:Class GO:0006990 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response The activation of genes whose promoters contain a specific sequence elements such as the unfolded protein response element (UPRE; consensus CAGCGTG) or the ER stress-response element (ERSE; CCAAN(N)9CCACG), as a result of signaling via the unfolded protein response. tmpzr1t_l9r_go_relaxed.owl unfolded protein response, up-regulation of target gene transcription|unfolded protein response, positive regulation of target gene transcription|positive regulation of transcription of target genes involved in unfolded protein response|unfolded protein response, stimulation of target gene transcription|unfolded protein response, upregulation of target gene transcription|unfolded protein response, target gene transcriptional activation|unfolded protein response, up regulation of target gene transcription|unfolded protein response, activation of target gene transcription biological_process owl:Class GO:0035233 biolink:NamedThing germ cell repulsion The directed movement of a germ cell from their site of production to the gonad, through the repulsion of cells away from a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050919 biolink:NamedThing negative chemotaxis The directed movement of a motile cell or organism towards a lower concentration of a chemical. tmpzr1t_l9r_go_relaxed.owl chemorepulsion|chemoaversion biological_process owl:Class GO:0015820 biolink:NamedThing leucine transport The directed movement of leucine, 2-amino-4-methylpentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-leucine transport biological_process owl:Class GO:0106032 biolink:NamedThing snRNA pseudouridine synthase activity Catalysis of the reaction: an snRNA uridine = an snRNA pseudouridine. Conversion of uridine in an snRNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. tmpzr1t_l9r_go_relaxed.owl hjd 2017-06-28T17:44:20Z molecular_function owl:Class GO:0009982 biolink:NamedThing pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6786583|Reactome:R-HSA-6790905|Reactome:R-HSA-8870289|Reactome:R-HSA-6787566|Reactome:R-HSA-6782381 Note that this term should not be confused with 'pseudouridylate synthase activity ; GO:0004730', which refers to the formation of free pseudouridine from uracil and ribose-5-phosphate. GO:0016439 molecular_function owl:Class GO:0043310 biolink:NamedThing negative regulation of eosinophil degranulation Any process that stops, prevents, or reduces the rate of eosinophil degranulation. tmpzr1t_l9r_go_relaxed.owl downregulation of eosinophil degranulation|down-regulation of eosinophil degranulation|negative regulation of eosinophil granule exocytosis|inhibition of eosinophil degranulation|down regulation of eosinophil degranulation biological_process owl:Class GO:0062142 biolink:NamedThing L-beta-ethynylserine biosynthetic process The chemical reactions and pathways resulting in the formation of L-beta-ethynylserine. L-beta-ethynylserine is an antibiotic produced by Streptomyces bacteria. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17763 dph 2019-09-02T16:39:59Z biological_process owl:Class GO:0120237 biolink:NamedThing terminal acetylenic compound biosynthetic process The chemical reactions and pathways resulting in the formation of a terminal acetylenic compound, a compound which contains a terminal alkyne moiety in which a carbon of the carbon-carbon triple bond (aka C#C) moiety is attached to a hydrogen atom. tmpzr1t_l9r_go_relaxed.owl terminal alkyne substituted compound synthesis|terminal alkyne substituted compound biosynthetic process|terminal alkyne substituted compound biosynthesis|terminal alkyne substituted compound anabolic process|terminal alkyne substituted compound anabolism https://github.com/geneontology/go-ontology/issues/17763 krc 2020-07-17T20:19:10Z biological_process owl:Class GO:0060211 biolink:NamedThing regulation of nuclear-transcribed mRNA poly(A) tail shortening Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length. tmpzr1t_l9r_go_relaxed.owl regulation of nuclear mRNA poly(A) tail shortening|regulation of mRNA deadenylation|regulation of 3' to 5' mRNA deadenylation biological_process owl:Class GO:0045693 biolink:NamedThing positive regulation of embryo sac central cell differentiation Any process that activates or increases the frequency, rate or extent of embryo sac central cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of female gametophyte central cell differentiation|positive regulation of female gametophyte central cell differentiation|upregulation of female gametophyte central cell differentiation|stimulation of female gametophyte central cell differentiation|up regulation of female gametophyte central cell differentiation|activation of female gametophyte central cell differentiation biological_process owl:Class GO:0019143 biolink:NamedThing 3-deoxy-manno-octulosonate-8-phosphatase activity Catalysis of the reaction: 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + H(2)O = 3-deoxy-D-manno-octulosonate + phosphate. tmpzr1t_l9r_go_relaxed.owl 3-deoxy-D-manno-octulosonate-8-phosphate 8-phosphohydrolase activity MetaCyc:KDO-8PPHOSPHAT-RXN|RHEA:11500|EC:3.1.3.45|KEGG_REACTION:R03350 molecular_function owl:Class GO:0007580 biolink:NamedThing extrachromosomal circular DNA accumulation involved in cell aging Increase in abundance, as cells age, of circular DNA molecules that originate in the chromosome but are excised and circularized, often by intramolecular homologous recombination between direct tandem repeats, and replicated independently of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl extrachromosomal circular DNA accumulation during cell ageing|extrachromosomal circular DNA accumulation during cell aging Note that the term string was changed to be consistent with placement of this term in cell aging hierarchy. biological_process owl:Class GO:0001301 biolink:NamedThing progressive alteration of chromatin involved in cell aging Any chromatin organization process that occurs during the lifespan of the cell that results in changes in chromatin structure. Such changes may lead to gene dysregulation and ultimately to a loss in cell homeostasis, bringing about an aging phenotype. tmpzr1t_l9r_go_relaxed.owl progressive alteration of chromatin during cell aging|age-dependent accumulation of genetic damage|progressive alteration of chromatin during cell ageing biological_process owl:Class GO:1904159 biolink:NamedThing megasporocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a megasporocyte. tmpzr1t_l9r_go_relaxed.owl megaspore mother cell differentiation The process aimed at the progression of a megasporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A megasporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) megaspores; also called megaspore mother cell. lr 2015-04-17T20:25:14Z biological_process owl:Class GO:0048533 biolink:NamedThing sporocyte differentiation The process in which a relatively unspecialized floral cell acquires the specialized features of a sporocyte. Sporocytes are the haploid spores of angiosperms. Once formed, they undergo meiotic divisions to form microspores and megaspores. tmpzr1t_l9r_go_relaxed.owl sporocyte development|sporocyte morphogenesis biological_process owl:Class GO:0071152 biolink:NamedThing G-protein alpha(q)-synembrin complex A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(q) subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl Ric-8A G(q) alpha subunit complex mah 2009-11-16T04:48:05Z cellular_component owl:Class GO:0015391 biolink:NamedThing nucleobase:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleobase(out) + cation(out) = nucleobase(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015294 biolink:NamedThing solute:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + cation(out) = solute(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901174 biolink:NamedThing phytoene biosynthetic process The chemical reactions and pathways resulting in the formation of phytoene. tmpzr1t_l9r_go_relaxed.owl phytoene formation|phytoene anabolism|phytoene synthesis|phytoene biosynthesis yaf 2012-07-19T09:48:15Z biological_process owl:Class GO:0045442 biolink:NamedThing deacetoxycephalosporin-C hydroxylase activity Catalysis of the reaction: 2-oxoglutarate + deacetoxycephalosporin C + O(2) = CO(2) + deacetylcephalosporin C + succinate. tmpzr1t_l9r_go_relaxed.owl deacetoxycephalosporin-C,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity|DACS|beta-lactam hydroxylase activity|3'-methylcephem hydroxylase activity|deacetylcephalosporin C synthase activity|deacetoxycephalosporin C hydroxylase activity|DAOC hydroxylase activity EC:1.14.11.26|KEGG_REACTION:R05229|MetaCyc:1.14.11.26-RXN|RHEA:16805 molecular_function owl:Class GO:0008843 biolink:NamedThing endochitinase activity Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902050 biolink:NamedThing neosartoricin biosynthetic process The chemical reactions and pathways resulting in the formation of neosartoricin. tmpzr1t_l9r_go_relaxed.owl neosartoricin formation|neosartoricin anabolism|neosartoricin biosynthesis|neosartoricin synthesis di 2013-04-08T20:31:11Z biological_process owl:Class GO:0006615 biolink:NamedThing SRP-dependent cotranslational protein targeting to membrane, docking The process in which an SRP-bound ribosome forms a complex with the SRP receptor in the ER membrane, allowing the ribosome to bind to the membrane, during cotranslational membrane targeting. tmpzr1t_l9r_go_relaxed.owl protein docking during SRP-dependent cotranslational protein targeting to membrane|SRP-dependent cotranslational protein-membrane targeting, docking|SRP-dependent cotranslational membrane targeting, docking biological_process owl:Class GO:0022615 biolink:NamedThing protein to membrane docking The initial attachment of a protein to a target membrane, mediated by a proteins protruding from the target membrane. Docking requires only that the proteins come close enough to interact and adhere. tmpzr1t_l9r_go_relaxed.owl protein-membrane docking biological_process owl:Class GO:1990261 biolink:NamedThing pre-mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of the unspliced pre-mRNA (pre-messenger RNA). tmpzr1t_l9r_go_relaxed.owl unspliced RNA decay|pre-mRNA decay rb 2014-01-07T23:06:44Z biological_process owl:Class GO:0006972 biolink:NamedThing hyperosmotic response Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. tmpzr1t_l9r_go_relaxed.owl response to hypertonicity|HOG response|hypertonic response biological_process owl:Class GO:2000017 biolink:NamedThing positive regulation of determination of dorsal identity Any process that activates or increases the frequency, rate or extent of determination of dorsal identity. tmpzr1t_l9r_go_relaxed.owl positive regulation of determination of adaxial identity jl 2010-07-15T03:27:59Z biological_process owl:Class GO:0019199 biolink:NamedThing transmembrane receptor protein kinase activity Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: a protein + ATP = a phosphoprotein + ADP. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8983063|Reactome:R-HSA-8983059 molecular_function owl:Class GO:0035445 biolink:NamedThing borate transmembrane transport The process in which borate is transported across a membrane. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals. tmpzr1t_l9r_go_relaxed.owl borate membrane transport|boron transmembrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-13T09:24:23Z biological_process owl:Class GO:0090116 biolink:NamedThing C-5 methylation of cytosine The covalent transfer of a methyl group to C-5 of cytosine in a DNA molecule. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T11:58:47Z biological_process owl:Class GO:0032776 biolink:NamedThing DNA methylation on cytosine The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule. tmpzr1t_l9r_go_relaxed.owl cytosine methylation biological_process owl:Class GO:0061941 biolink:NamedThing positive regulation of c-di-GMP signaling Any process that increases the rate, frequency or extent of c-di-GMP signaling. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-14T19:11:15Z biological_process owl:Class GO:0050330 biolink:NamedThing theanine hydrolase activity Catalysis of the reaction: N(5)-ethyl-L-glutamine + H(2)O = L-glutamate + ethylamine. tmpzr1t_l9r_go_relaxed.owl N5-ethyl-L-glutamine amidohydrolase activity|L-theanine amidohydrolase activity|5-N-ethyl-L-glutamine amidohydrolase activity KEGG_REACTION:R02930|EC:3.5.1.65|RHEA:18013|MetaCyc:THEANINE-HYDROLASE-RXN molecular_function owl:Class GO:0033969 biolink:NamedThing gamma-glutamyl-gamma-aminobutyrate hydrolase activity Catalysis of the reaction: 4-(L-gamma-glutamylamino)butanoate + H(2)O = 4-aminobutanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyl-GABA hydrolase activity|YcjL|PuuD|4-(glutamylamino)butanoate amidohydrolase activity KEGG_REACTION:R07419|EC:3.5.1.94|MetaCyc:RXN0-3942|RHEA:19737 molecular_function owl:Class GO:0034227 biolink:NamedThing tRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl tRNA thiolation|tRNA sulfurtransferase activity biological_process owl:Class GO:0010444 biolink:NamedThing guard mother cell differentiation The process in which a meristemoid acquires the specialized features of a guard mother cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071016 biolink:NamedThing U12-type precatalytic spliceosome A spliceosomal complex that is formed by the recruitment of the preassembled U4atac/U6atac.U5 tri-snRNP to the U12-type prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U11, U12 and U4atac/U6atac.U5 snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian U12-type spliceosomal complex B|minor precatalytic spliceosome|AT-AC precatalytic spliceosome|yeast U12-type spliceosomal complex A2-1|mammalian U12-type spliceosomal complex B1 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005689 biolink:NamedThing U12-type spliceosomal complex Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site. tmpzr1t_l9r_go_relaxed.owl AT-AC spliceosomal complex|minor spliceosomal complex|minor (U12-type) spliceosomal complex Wikipedia:Minor_spliceosome cellular_component owl:Class GO:0075119 biolink:NamedThing induction by symbiont of host G protein-coupled receptor signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host G protein-coupled receptor signal transduction|positive regulation by symbiont of host signal transduction mediated by G-protein alpha subunit|positive regulation by symbiont of host signal transduction mediated by G-protein beta subunit|positive regulation by symbiont of host signal transduction mediated by G-protein gamma subunit|positive regulation by symbiont of host G-protein coupled receptor protein signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by symbiont of host G protein-coupled receptor signal transduction ; GO:0075088". GO:0075125|GO:0075128|GO:0075122 biological_process owl:Class GO:0075113 biolink:NamedThing induction by symbiont of host transmembrane receptor-mediated signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host transmembrane receptor-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by host of symbiont transmembrane receptor-mediated signal transduction ; GO:0075082". biological_process owl:Class GO:1905408 biolink:NamedThing negative regulation of creatine transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of creatine transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of creatine transmembrane transporter activity|inhibition of creatine transmembrane transporter activity|down regulation of creatine transmembrane transporter activity|downregulation of creatine transmembrane transporter activity bc 2016-08-25T15:08:56Z biological_process owl:Class GO:0015200 biolink:NamedThing methylammonium transmembrane transporter activity Enables directed movement of methylammonium, CH3NH2, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071038 biolink:NamedThing nuclear polyadenylation-dependent tRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an aberrant or incorrectly modified transfer RNA (tRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target tRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent tRNA catabolic process krc 2009-07-29T01:08:14Z biological_process owl:Class GO:0106354 biolink:NamedThing tRNA surveillance The set of processes involved in identifying and degrading defective or aberrant tRNAs. tmpzr1t_l9r_go_relaxed.owl hjd 2021-01-27T16:29:46Z biological_process owl:Class GO:0051522 biolink:NamedThing activation of monopolar cell growth Any process that initiates the inactive process of monopolar cell growth, polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051515 biolink:NamedThing positive regulation of monopolar cell growth Any process that activates or increases the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell. tmpzr1t_l9r_go_relaxed.owl up regulation of monopolar cell growth|stimulation of monopolar cell growth|up-regulation of monopolar cell growth|upregulation of monopolar cell growth biological_process owl:Class GO:0071090 biolink:NamedThing alphaIIb-beta3 integrin-fibronectin-tissue transglutaminase complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to fibronectin and tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-FN1-TGM2 complex mah 2009-11-06T04:46:24Z cellular_component owl:Class GO:0045482 biolink:NamedThing trichodiene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + trichodiene. tmpzr1t_l9r_go_relaxed.owl trans,trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, trichodiene-forming)|sesquiterpene cyclase activity|trans,trans-farnesyl-diphosphate sesquiterpenoid-lyase activity|trichodiene synthetase activity RHEA:12052|KEGG_REACTION:R02306|MetaCyc:TRICHODIENE-SYNTHASE-RXN|EC:4.2.3.6 molecular_function owl:Class GO:2000557 biolink:NamedThing regulation of immunoglobulin production in mucosal tissue Any process that modulates the frequency, rate or extent of immunoglobulin production in mucosal tissue. tmpzr1t_l9r_go_relaxed.owl regulation of antibody production in mucosal tissue ebc 2011-04-03T07:52:09Z biological_process owl:Class GO:1990066 biolink:NamedThing energy quenching The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted by nonphotochemical quenching or chlorophyll fluorescence. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-27T21:02:00Z biological_process owl:Class GO:0072765 biolink:NamedThing centromere localization A cellular localization process in which a centromere/kinetochore is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl kinetochore localization|establishment and maintenance of kinetochore localization|kinetochore localisation mah 2012-11-21T13:30:53Z biological_process owl:Class GO:0090446 biolink:NamedThing negative regulation of nematode larval development, heterochronic Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and decreases the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-24T13:24:43Z biological_process owl:Class GO:0045961 biolink:NamedThing negative regulation of development, heterochronic Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and decreases the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl downregulation of development, heterochronic|down regulation of development, heterochronic|down-regulation of development, heterochronic|inhibition of development, heterochronic biological_process owl:Class GO:1900575 biolink:NamedThing emodin biosynthetic process The chemical reactions and pathways resulting in the formation of emodin. tmpzr1t_l9r_go_relaxed.owl emodin synthesis|emodin formation|emodin anabolism|emodin biosynthesis di 2012-05-15T06:42:14Z biological_process owl:Class GO:1990711 biolink:NamedThing beta-catenin-ICAT complex Transcription factor complex that inhibits binding of Tcf to beta-catenin while preserving interaction of catenin with cadherin thus inhibiting transcription mediated by beta-catenin-Tcf complex. tmpzr1t_l9r_go_relaxed.owl CTNNB1-CTNNBIP1 complex An example of this is Catenin beta-1 in human (UniProt symbol P35222) in PMID:12408824 (inferred from physical interaction). bhm 2015-03-25T21:08:11Z cellular_component owl:Class GO:0015734 biolink:NamedThing taurine transport The directed movement of taurine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046130 biolink:NamedThing purine ribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside degradation|purine ribonucleoside breakdown|purine ribonucleoside catabolism biological_process owl:Class GO:0042454 biolink:NamedThing ribonucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. tmpzr1t_l9r_go_relaxed.owl ribonucleoside degradation|ribonucleoside breakdown|ribonucleoside catabolism biological_process owl:Class GO:2000203 biolink:NamedThing regulation of ribosomal large subunit export from nucleus Any process that modulates the frequency, rate or extent of ribosomal large subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of ribosomal large subunit transport from nucleus to cytoplasm|regulation of 60S ribosomal subunit export from nucleus|regulation of 50S ribosomal subunit export from nucleus|regulation of ribosomal large subunit export out of nucleus|regulation of ribosomal large subunit export from cell nucleus|regulation of ribosomal large subunit-nucleus export mah 2010-10-26T10:52:36Z biological_process owl:Class GO:0002405 biolink:NamedThing antigen sampling by dendritic cells in mucosal-associated lymphoid tissue The process of antigen sampling carried out by dendritic cells in the mucosal-associated lymphoid tissue. tmpzr1t_l9r_go_relaxed.owl antigen sampling by dendritic cells in MALT biological_process owl:Class GO:0031155 biolink:NamedThing regulation of reproductive fruiting body development Any process that modulates the frequency, rate or extent of reproductive fruiting body development. tmpzr1t_l9r_go_relaxed.owl regulation of fruiting body formation biological_process owl:Class GO:0061243 biolink:NamedThing mesonephric renal vesicle morphogenesis The process in which the anatomical structures of the mesonephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:20:21Z biological_process owl:Class GO:0072077 biolink:NamedThing renal vesicle morphogenesis The process in which the anatomical structures of the renal vesicle are generated and organized. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:21:06Z biological_process owl:Class GO:0001743 biolink:NamedThing lens placode formation The initial developmental process that will lead to the formation of an eye. tmpzr1t_l9r_go_relaxed.owl optic placode formation biological_process owl:Class GO:1990193 biolink:NamedThing BtuCD complex Protein complex involved in cobalamin (vitamin B12) transport through the plasma membrane. In E. coli, the complex is a tetramer and consists of the cytoplasmic ATPase BtuD homodimer together with the transmembrane BtuC homodimer. tmpzr1t_l9r_go_relaxed.owl cobalamin transport complex, core subunit|vitamin B12 transport complex, core subunit|BtuC-BtuD complex bhm 2013-09-12T14:58:56Z cellular_component owl:Class GO:0008360 biolink:NamedThing regulation of cell shape Any process that modulates the surface configuration of a cell. tmpzr1t_l9r_go_relaxed.owl GO:0045789|GO:0045788 biological_process owl:Class GO:0002504 biolink:NamedThing antigen processing and presentation of peptide or polysaccharide antigen via MHC class II The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex. tmpzr1t_l9r_go_relaxed.owl peptide or polysaccharide antigen processing and presentation of via MHC class II biological_process owl:Class GO:0006122 biolink:NamedThing mitochondrial electron transport, ubiquinol to cytochrome c The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III. tmpzr1t_l9r_go_relaxed.owl complex III (ubiquinone to cytochrome c) biological_process owl:Class GO:0060519 biolink:NamedThing cell adhesion involved in prostatic bud elongation The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the elongation of the primary prostatic bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002085 biolink:NamedThing inhibition of neuroepithelial cell differentiation Any process that prevents the activation of neuroepithelial cell differentiation. Neuroepithelial cell differentiation is the process in which epiblast cells acquire specialized features of neuroepithelial cells. tmpzr1t_l9r_go_relaxed.owl repression of premature neural plate formation|negative regulation of neural plate formation biological_process owl:Class GO:0048505 biolink:NamedThing regulation of timing of cell differentiation The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features. Any process that modulates the rate, frequency or extent of the XXX at a consistent predetermined time point during its development. tmpzr1t_l9r_go_relaxed.owl timing of cell differentiation biological_process owl:Class GO:0140500 biolink:NamedThing regulation of reticulophagy Any process that modulates the frequency, rate or extent of reticulophagy. tmpzr1t_l9r_go_relaxed.owl regulation of ER degradation|regulation of autophagy of the ER|regulation of endoplasmic reticulum autophagy|regulation of endoplasmic reticulum degradation|regulation of autophagy of the endoplasmic reticulum|regulation of ER autophagy|regulation of ER-phagy https://github.com/geneontology/go-ontology/issues/19860 pg 2020-08-10T12:01:22Z biological_process owl:Class GO:1903536 biolink:NamedThing positive regulation of lactose biosynthetic process Any process that activates or increases the frequency, rate or extent of lactose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of lactose biosynthesis|activation of lactose biosynthesis|activation of lactose formation|up regulation of lactose biosynthetic process|upregulation of lactose anabolism|up-regulation of lactose biosynthetic process|upregulation of lactose formation|up-regulation of lactose formation|up-regulation of lactose anabolism|positive regulation of lactose formation|up regulation of lactose formation|up-regulation of lactose synthesis|up regulation of lactose anabolism|positive regulation of lactose synthesis|up-regulation of lactose biosynthesis|up regulation of lactose biosynthesis|activation of lactose anabolism|activation of lactose synthesis|up regulation of lactose synthesis|positive regulation of lactose biosynthesis|upregulation of lactose synthesis|upregulation of lactose biosynthetic process|positive regulation of lactose anabolism|activation of lactose biosynthetic process mr 2014-10-08T16:26:29Z biological_process owl:Class GO:0021889 biolink:NamedThing olfactory bulb interneuron differentiation The process in which a neuroblast acquires specialized features of an interneuron residing in the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009358 biolink:NamedThing polyphosphate kinase complex A protein complex that possesses polyphosphate kinase activity. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'polyphosphate kinase activity ; GO:0008976'. cellular_component owl:Class GO:1990108 biolink:NamedThing protein linear deubiquitination A protein deubiquitination process in which a linear polymer of ubiquitin, formed by the amino-terminal methionine (M1) of one ubiquitin molecule and by the carboxy-terminal glycine (G76) of the next, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl sp 2013-05-29T05:58:49Z biological_process owl:Class GO:0033541 biolink:NamedThing fatty acid beta-oxidation, unsaturated, odd number A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on odd-numbered carbons are degraded. In this pathway, a cis-3-enoyl-CoA is generated by the core beta-oxidation pathway, and then converted to a trans-2-enoyl-CoA, which can return to the core beta-oxidation pathway for complete degradation. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5137 biological_process owl:Class GO:1905689 biolink:NamedThing positive regulation of diacylglycerol kinase activity Any process that activates or increases the frequency, rate or extent of diacylglycerol kinase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of DGK activity|up regulation of 1,2-diacylglycerol kinase activity|up regulation of ATP:diacylglycerol phosphotransferase activity|positive regulation of ATP:diacylglycerol phosphotransferase activity|activation of DG kinase activity|upregulation of diglyceride kinase activity|activation of ATP:diacylglycerol phosphotransferase activity|positive regulation of diglyceride kinase activity|up regulation of CTP:diacylglycerol kinase activity|upregulation of diacylglycerol:ATP kinase activity|up regulation of diacylglycerol:ATP kinase activity|activation of diacylglycerol:ATP kinase activity|up-regulation of DGK activity|upregulation of diacylglycerol kinase activity|up-regulation of diacylglycerol kinase activity|upregulation of ATP:diacylglycerol phosphotransferase activity|upregulation of arachidonoyl-specific diacylglycerol kinase activity|positive regulation of 1,2-diacylglycerol kinase activity|activation of DGK activity|up-regulation of sn-1,2-diacylglycerol kinase activity|up-regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|up-regulation of CTP:diacylglycerol kinase activity|up-regulation of diacylglycerol:ATP kinase activity|upregulation of DG kinase activity|up regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|up-regulation of 1,2-diacylglycerol kinase (phosphorylating)|up regulation of diacylglycerol kinase activity|upregulation of DGK activity|up-regulation of diglyceride kinase activity|activation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|positive regulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|up regulation of sn-1,2-diacylglycerol kinase activity|upregulation of CTP:diacylglycerol kinase activity|upregulation of 1,2-diacylglycerol kinase (phosphorylating)|positive regulation of 1,2-diacylglycerol kinase (phosphorylating)|activation of sn-1,2-diacylglycerol kinase activity|up regulation of arachidonoyl-specific diacylglycerol kinase activity|up regulation of diglyceride kinase activity|positive regulation of diacylglycerol:ATP kinase activity|upregulation of sn-1,2-diacylglycerol kinase activity|positive regulation of CTP:diacylglycerol kinase activity|activation of diacylglycerol kinase activity|up-regulation of ATP:diacylglycerol phosphotransferase activity|upregulation of 1,2-diacylglycerol kinase activity|activation of 1,2-diacylglycerol kinase (phosphorylating)|activation of arachidonoyl-specific diacylglycerol kinase activity|up-regulation of DG kinase activity|positive regulation of arachidonoyl-specific diacylglycerol kinase activity|positive regulation of DG kinase activity|positive regulation of sn-1,2-diacylglycerol kinase activity|positive regulation of DGK activity|up regulation of 1,2-diacylglycerol kinase (phosphorylating)|activation of CTP:diacylglycerol kinase activity|activation of diglyceride kinase activity|up regulation of DG kinase activity|up-regulation of arachidonoyl-specific diacylglycerol kinase activity|upregulation of ATP:1,2-diacylglycerol 3-phosphotransferase activity|up-regulation of 1,2-diacylglycerol kinase activity|activation of 1,2-diacylglycerol kinase activity bc 2016-11-14T12:26:26Z biological_process owl:Class GO:1900994 biolink:NamedThing (-)-secologanin biosynthetic process The chemical reactions and pathways resulting in the formation of (-)-secologanin. tmpzr1t_l9r_go_relaxed.owl (-)-secologanin biosynthesis|(-)-secologanin formation|(-)-secologanin anabolism|(-)-secologanin synthesis yaf 2012-06-14T09:51:46Z biological_process owl:Class GO:0052762 biolink:NamedThing gellan lyase activity Catalysis of the reaction: gellan = n beta-D-4-deoxy-delta4,5-GlcAp-(1->4)-beta-D-Glcp-(1->4)-alpha-L-Rhap-(1->3)-beta-D-Glcp. This reaction is the eliminative cleavage of beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyluronate bonds of gellan backbone, releasing tetrasaccharides containing a 4-deoxy-4,5-unsaturated D-glucopyranosyluronic acid at the non-reducing end; in the product, the abbreviations are D-glucose (Glc), D-glucuronic acid (GlcA), and L-rhamnose (Rha). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12269|EC:4.2.2.25 ai 2011-09-29T03:19:25Z molecular_function owl:Class GO:0003952 biolink:NamedThing NAD+ synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate. tmpzr1t_l9r_go_relaxed.owl NAD(+) synthetase (glutamine-hydrolyzing) activity|desamidonicotinamide adenine dinucleotide amidotransferase activity|NAD+ synthase (glutamine-hydrolysing)|NAD+ synthetase (glutamine-hydrolyzing)|NAD synthetase (glutamine-hydrolysing)|DPN synthetase activity|deamido-NAD+:L-glutamine amido-ligase (AMP-forming)|NAD synthase (glutamine-hydrolyzing) activity|nicotinamide adenine dinucleotide synthetase (glutamine) activity Reactome:R-HSA-197271|RHEA:24384|EC:6.3.5.1|Wikipedia:NAD+_synthase_(glutamine-hydrolysing)|MetaCyc:NAD-SYNTH-GLN-RXN molecular_function owl:Class GO:0031273 biolink:NamedThing negative regulation of pseudopodium assembly Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of pseudopodia. tmpzr1t_l9r_go_relaxed.owl down regulation of pseudopodium formation|down-regulation of pseudopodium formation|inhibition of pseudopodium formation|negative regulation of pseudopodium formation|downregulation of pseudopodium formation biological_process owl:Class GO:0042459 biolink:NamedThing octopine catabolic process to proline The chemical reactions and pathways resulting in the breakdown of octopine into other compounds, including proline. tmpzr1t_l9r_go_relaxed.owl octopine breakdown to proline|octopine degradation to proline MetaCyc:OCTOPINEDEG-PWY biological_process owl:Class GO:0018504 biolink:NamedThing cis-1,2-dihydrobenzene-1,2-diol dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydrobenzene-1,2-diol + NAD+ = catechol + NADH + H+. tmpzr1t_l9r_go_relaxed.owl cis-1,2-dihydrocyclohexa-3,5-diene (nicotinamide adenine dinucleotide) oxidoreductase activity|cis-1,2-dihydrobenzene-1,2-diol:NAD+ oxidoreductase activity|cis-benzene glycol dehydrogenase activity UM-BBD_enzymeID:e0060|MetaCyc:1.3.1.19-RXN|RHEA:15457|EC:1.3.1.19 molecular_function owl:Class GO:0032931 biolink:NamedThing histone acetyltransferase activity (H3-K56 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 56) = CoA + histone H3 N6-acetyl-L-lysine (position 56). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K56 specific) molecular_function owl:Class GO:0055071 biolink:NamedThing manganese ion homeostasis Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl manganese homeostasis biological_process owl:Class GO:0050153 biolink:NamedThing omega-hydroxydecanoate dehydrogenase activity Catalysis of the reaction: 10-hydroxydecanoate + NAD(+) = 10-oxodecanoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl w-hydroxydecanoate dehydrogenase activity|10-hydroxydecanoate:NAD+ 10-oxidoreductase activity KEGG_REACTION:R03886|RHEA:20880|EC:1.1.1.66|MetaCyc:OMEGA-HYDROXYDECANOATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:1905022 biolink:NamedThing negative regulation of threonine-tRNA ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of threonine-tRNA ligase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of L-threonine:tRNAThr ligase (AMP-forming)|negative regulation of threonyl-transfer ribonucleic acid synthetase activity|down-regulation of threonyl ribonucleic synthetase activity|down regulation of threonine-tRNA ligase activity|downregulation of threonine translase activity|down regulation of threonine-transfer ribonucleate synthetase activity|inhibition of threonine translase activity|negative regulation of L-threonine:tRNAThr ligase (AMP-forming)|inhibition of threonyl-transfer ribonucleate synthetase activity|inhibition of threonyl-transfer ribonucleic acid synthetase activity|negative regulation of threonine-transfer ribonucleate synthetase activity|inhibition of threonyl ribonucleic synthetase activity|down regulation of TRS|inhibition of threonyl-tRNA synthetase activity|negative regulation of threonyl-transfer ribonucleate synthetase activity|downregulation of TRS|downregulation of threonyl-transfer RNA synthetase activity|downregulation of threonine-transfer ribonucleate synthetase activity|down regulation of threonyl-transfer ribonucleate synthetase activity|inhibition of threonine-tRNA ligase activity|down-regulation of threonyl-transfer RNA synthetase activity|downregulation of threonyl-transfer ribonucleic acid synthetase activity|down-regulation of threonyl-transfer ribonucleic acid synthetase activity|negative regulation of threonine translase activity|down-regulation of TRS|negative regulation of threonyl-transfer RNA synthetase activity|down-regulation of threonyl-transfer ribonucleate synthetase activity|downregulation of threonine-tRNA ligase activity|inhibition of threonine-transfer ribonucleate synthetase activity|negative regulation of TRS|downregulation of threonyl-transfer ribonucleate synthetase activity|down regulation of threonyl-tRNA synthetase activity|down-regulation of threonyl-tRNA synthetase activity|down regulation of threonyl-transfer RNA synthetase activity|down-regulation of threonine-tRNA ligase activity|downregulation of threonyl ribonucleic synthetase activity|down regulation of threonyl ribonucleic synthetase activity|down-regulation of L-threonine:tRNAThr ligase (AMP-forming)|downregulation of L-threonine:tRNAThr ligase (AMP-forming)|inhibition of threonyl-transfer RNA synthetase activity|down-regulation of threonine-transfer ribonucleate synthetase activity|down-regulation of threonine translase activity|inhibition of L-threonine:tRNAThr ligase (AMP-forming)|inhibition of TRS|negative regulation of threonyl ribonucleic synthetase activity|down regulation of threonyl-transfer ribonucleic acid synthetase activity|negative regulation of threonyl-tRNA synthetase activity|downregulation of threonyl-tRNA synthetase activity|down regulation of threonine translase activity sl 2016-03-03T19:12:32Z biological_process owl:Class GO:0004166 biolink:NamedThing dolichyl-phosphate alpha-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UDP + dolichyl N-acetyl-alpha-D-glucosaminyl phosphate. tmpzr1t_l9r_go_relaxed.owl dolichyl phosphate N-acetylglucosaminyltransferase activity|dolichyl-phosphate N-acetylglucosaminyltransferase activity|dolichyl-phosphate acetylglucosaminyltransferase activity|dolichyl phosphate acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-dolichol phosphate acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:dolichyl-phosphate alpha-N-acetyl-D-glucosaminyltransferase activity|UDP-N-acetylglucosamine-dolichol phosphate N-acetylglucosaminyltransferase activity MetaCyc:2.4.1.153-RXN|EC:2.4.1.153|RHEA:14693 GO:0004101 molecular_function owl:Class GO:1900655 biolink:NamedThing regulation of diorcinol biosynthetic process Any process that modulates the frequency, rate or extent of diorcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of diorcinol formation|regulation of diorcinol anabolism|regulation of diorcinol synthesis|regulation of diorcinol biosynthesis di 2012-05-22T04:08:40Z biological_process owl:Class GO:2000881 biolink:NamedThing regulation of starch catabolic process Any process that modulates the frequency, rate or extent of starch catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of starch degradation|regulation of starch breakdown|regulation of starch catabolism bf 2011-07-27T03:23:39Z biological_process owl:Class GO:0019516 biolink:NamedThing lactate oxidation The chemical reactions and pathways resulting in the conversion of lactate to other compounds, such as pyruvate, with concomitant loss of electrons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032417 biolink:NamedThing positive regulation of sodium:proton antiporter activity Any process that activates or increases the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). tmpzr1t_l9r_go_relaxed.owl upregulation of sodium:hydrogen antiporter activity|up-regulation of sodium:hydrogen antiporter activity|activation of sodium:hydrogen antiporter activity|up regulation of sodium:hydrogen antiporter activity|stimulation of sodium:hydrogen antiporter activity|positive regulation of sodium:hydrogen antiporter activity biological_process owl:Class GO:0090283 biolink:NamedThing regulation of protein glycosylation in Golgi Any process that modulates the rate, frequency, or extent of the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in any compartment of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid glycosylation in Golgi tb 2010-02-18T02:43:55Z biological_process owl:Class GO:0043871 biolink:NamedThing delta1-piperideine-6-carboxylate dehydrogenase activity Catalysis of the reaction: delta1-piperideine-6-carboxylate + NAD+ + 2 H2O = 2-aminoadipate + NADH + H+. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl AmaB|PIPOX MetaCyc:RXN-8162|RHEA:49476 This function is part of the pipecolate pathway of lysine catabolism. molecular_function owl:Class GO:0102331 biolink:NamedThing heptadecanoyl-[acp] elongase/decarboxylase activity Catalysis of the reaction: malonyl-CoA + 3 H+ + a heptodecanoyl-[acp] = octadec-1-ene + 2 carbon dioxide + coenzyme A + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13259 molecular_function owl:Class GO:0015938 biolink:NamedThing coenzyme A catabolic process The chemical reactions and pathways resulting in the breakdown of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl CoA catabolism|coenzyme A catabolism|coenzyme A degradation|coenzyme A breakdown GO:0006765 biological_process owl:Class GO:0051539 biolink:NamedThing 4 iron, 4 sulfur cluster binding Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. tmpzr1t_l9r_go_relaxed.owl iron-sulphur cluster 4Fe-4S binding|tetrairon tetrasulphide cluster binding|4Fe-4S cluster binding|iron-sulfur cluster 4Fe-4S binding|tetrairon tetrasulfide cluster binding|4 Fe 4 S cluster binding|4 iron, 4 sulphur cluster binding molecular_function owl:Class GO:0051536 biolink:NamedThing iron-sulfur cluster binding Binding to an iron-sulfur cluster, a combination of iron and sulfur atoms. tmpzr1t_l9r_go_relaxed.owl iron sulfur cluster binding|Fe/S binding|iron sulphur cluster binding|iron-sulphur cluster binding molecular_function owl:Class GO:0061797 biolink:NamedThing pH-gated chloride channel activity A gated channel activity that enables the transmembrane transfer of a chloride ion by a channel that opens in response to a change in pH. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-06T07:11:14Z molecular_function owl:Class GO:0034026 biolink:NamedThing L-amino-acid alpha-ligase activity Catalysis of the reaction: ATP + an L-amino acid + an L-amino acid = ADP + phosphate + L-aminoacyl-L-amino acid. tmpzr1t_l9r_go_relaxed.owl YwfE|bacilysin synthetase activity|L-amino acid ligase activity|L-amino acid alpha-ligase activity MetaCyc:6.3.2.28-RXN|RHEA:44332|EC:6.3.2.49 molecular_function owl:Class GO:2000074 biolink:NamedThing regulation of type B pancreatic cell development Any process that modulates the frequency, rate or extent of pancreatic B cell development. tmpzr1t_l9r_go_relaxed.owl regulation of pancreatic beta cell development|regulation of pancreatic B cell development tb 2010-08-27T11:19:37Z biological_process owl:Class GO:0034464 biolink:NamedThing BBSome A ciliary protein complex involved in cilium biogenesis. It consists of at least seven Bardet-Biedl syndrome (BBS) proteins and BBIP10. It moves in association with IFT trains through cilia (likely as an IFT-A/B adaptor or cargo), and is required for the integrity of IFT-A and IFT-B. tmpzr1t_l9r_go_relaxed.owl Bardet-Biedl syndrome complex cellular_component owl:Class GO:1904216 biolink:NamedThing positive regulation of protein import into chloroplast stroma Any process that activates or increases the frequency, rate or extent of protein import into chloroplast stroma. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein import into chloroplast stroma|activation of chloroplast stroma protein import|up-regulation of protein transport into chloroplast stroma|activation of protein import into chloroplast stroma|up regulation of protein transport into chloroplast stroma|up regulation of protein import into chloroplast stroma|activation of protein transport into chloroplast stroma|up-regulation of chloroplast stroma protein import|upregulation of protein transport into chloroplast stroma|upregulation of chloroplast stroma protein import|positive regulation of chloroplast stroma protein import|positive regulation of protein transport into chloroplast stroma|upregulation of protein import into chloroplast stroma|up regulation of chloroplast stroma protein import tb 2015-05-15T00:47:55Z biological_process owl:Class GO:0010376 biolink:NamedThing stomatal complex formation The process that gives rise to the stomatal complex. This process pertains to the initial formation of a structure from unspecified parts. The stomatal complex is the stomatal guard cells and their associated epidermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033046 biolink:NamedThing negative regulation of sister chromatid segregation Any process that stops, prevents, or reduces the frequency, rate or extent of sister chromatid segregation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004322 biolink:NamedThing ferroxidase activity Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl HEPH|iron(II): oxygen oxidoreductase activity|multicopper ferroxidase iron transport mediator activity|ceruloplasmin|Fe(II):oxygen oxidoreductase activity|caeruloplasmin|ferroxidase, iron II:oxygen oxidoreductase activity|ferro:O2 oxidoreductase activity|ferroxidase I|hephaestin https://github.com/geneontology/go-ontology/issues/20675 Reactome:R-HSA-5621402|Reactome:R-HSA-917891|Reactome:R-HSA-1562626|MetaCyc:RXN0-1483|Reactome:R-HSA-5691107|Reactome:R-HSA-1562604|Reactome:R-HSA-917933|Reactome:R-HSA-1562603|EC:1.16.3.1|RHEA:11148 molecular_function owl:Class GO:0016724 biolink:NamedThing oxidoreductase activity, acting on metal ions, oxygen as acceptor Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered and oxygen acts as an electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, oxidizing metal ions, oxygen as acceptor https://github.com/geneontology/go-ontology/issues/20682 EC:1.16.3.- molecular_function owl:Class GO:0030546 biolink:NamedThing signaling receptor activator activity The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. tmpzr1t_l9r_go_relaxed.owl signalling receptor activator activity|receptor activator activity molecular_function owl:Class GO:1905422 biolink:NamedThing negative regulation of plant organ morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of plant organ morphogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of plant organ morphogenesis|inhibition of plant organ morphogenesis|down regulation of plant organ morphogenesis|downregulation of plant organ morphogenesis tb 2016-09-06T23:00:22Z biological_process owl:Class GO:2000923 biolink:NamedThing positive regulation of arabinoxylan-containing compound catabolic process Any process that activates or increases the frequency, rate or extent of arabinoxylan-containing compound catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of arabinoxylan catabolism tt 2011-08-01T12:39:02Z biological_process owl:Class GO:0005277 biolink:NamedThing acetylcholine transmembrane transporter activity Enables the transfer of acetylcholine from one side of a membrane to the other. Acetylcholine is an acetic acid ester of the organic base choline and functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-264615 molecular_function owl:Class GO:0005326 biolink:NamedThing neurotransmitter transmembrane transporter activity Enables the directed movement of a neurotransmitter into, out of or within a cell, or between cells. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. tmpzr1t_l9r_go_relaxed.owl neurotransmitter transporter activity Reactome:R-HSA-374896|Reactome:R-HSA-374919 molecular_function owl:Class GO:0061955 biolink:NamedThing positive regulation of actin filament depolymerization involved in acrosome reaction Any process that increases the rate or exent of actin depolymerization as part of the acrosome reaction. This allows the acrosomal membrane and plasma membrane to fuse. tmpzr1t_l9r_go_relaxed.owl dph 2017-11-10T19:43:18Z biological_process owl:Class GO:0030836 biolink:NamedThing positive regulation of actin filament depolymerization Any process that activates or increases the frequency, rate or extent of actin depolymerization. tmpzr1t_l9r_go_relaxed.owl positive regulation of actin polymerization and/or depolymerization|positive regulation of actin depolymerization|stimulation of actin filament depolymerization|up-regulation of actin filament depolymerization|actin filament destabilization|activation of actin filament depolymerization|up regulation of actin filament depolymerization|upregulation of actin filament depolymerization Note that this term was split from 'positive regulation of actin polymerization and/or depolymerization ; GO:0045758' (sibling term 'positive regulation of actin polymerization ; GO:0030838'). GO:0030045 biological_process owl:Class GO:0052131 biolink:NamedThing positive aerotaxis The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009454 biolink:NamedThing aerotaxis The directed movement of a motile cell or organism in response to environmental oxygen. tmpzr1t_l9r_go_relaxed.owl taxis in response to atmospheric oxygen biological_process owl:Class GO:1990179 biolink:NamedThing protein localization to actomyosin contractile ring A process in which a protein is transported to, or maintained at, the actomyosin contractile ring. tmpzr1t_l9r_go_relaxed.owl protein localisation to actomyosin contractile ring mah 2013-08-30T16:13:54Z biological_process owl:Class GO:0120280 biolink:NamedThing ciliary pro-basal body The cilary pro-basal body is an immature, partially assembled form of a ciliary basal body found next to the basal body of a cilium. Pro-basal bodies are not capable of nucleating a cilium. As the cell progresses through the cell cycle, continuing assembly will convert the pro-basal body into a mature basal body that is capable of nucleating a cilium. tmpzr1t_l9r_go_relaxed.owl flagellar probasal body|pro-basal body|flagellar pro-basal body|probasal body|pro-centriole https://github.com/geneontology/go-ontology/issues/14963 Pro-basal bodies are distinct from basal bodies as they are not at the base of a cilium and are not capable of nucleating a cilium. While immature, they contain some structures in common with the mature basal body and also may contain proteins unique to the immature state. Note that cilia and eukaryotic flagella are deemed to be equivalent. In many eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component. In other eukaryotic cells, centrioles are not involved in cell division but only in cilium assembly, which is thought to be the ancestral role of the centriole/basal body. krc 2020-10-29T22:54:44Z cellular_component owl:Class GO:1901523 biolink:NamedThing icosanoid catabolic process The chemical reactions and pathways resulting in the breakdown of icosanoid. tmpzr1t_l9r_go_relaxed.owl icosanoid breakdown|icosanoid catabolism|icosanoid degradation pr 2012-10-22T10:50:09Z biological_process owl:Class GO:1900365 biolink:NamedThing positive regulation of mRNA polyadenylation Any process that activates or increases the frequency, rate or extent of mRNA polyadenylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of mRNA polyadenylylation|positive regulation of cleavage and polyadenylylation specificity factor activity|activation of mRNA polyadenylation|upregulation of mRNA polyadenylation|activation of mRNA polyadenylylation|up-regulation of cleavage and polyadenylylation specificity factor activity|upregulation of cleavage and polyadenylylation specificity factor activity|upregulation of mRNA polyadenylylation|up regulation of mRNA polyadenylylation|activation of cleavage and polyadenylylation specificity factor activity|up-regulation of mRNA polyadenylation|up regulation of mRNA polyadenylation|up-regulation of mRNA polyadenylylation|up regulation of cleavage and polyadenylylation specificity factor activity pr 2012-04-12T04:36:39Z biological_process owl:Class GO:1903356 biolink:NamedThing positive regulation of distal tip cell migration Any process that activates or increases the frequency, rate or extent of distal tip cell migration. tmpzr1t_l9r_go_relaxed.owl upregulation of distal tip cell migration|activation of distal tip cell migration|up regulation of distal tip cell migration|up-regulation of distal tip cell migration pr 2014-08-21T10:05:26Z biological_process owl:Class GO:0002533 biolink:NamedThing lysosomal enzyme secretion involved in inflammatory response The regulated release of lysosomal enzymes by a cell as part of an inflammatory response. tmpzr1t_l9r_go_relaxed.owl secretion of lysosomal enzymes involved in inflammatory response|secretion of lysosomal enzymes involved in acute inflammatory response|lysosomal enzyme secretion involved in acute inflammatory response biological_process owl:Class GO:0033299 biolink:NamedThing secretion of lysosomal enzymes The controlled release of lysosomal enzymes by a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002479 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl TAP-dependent exogenous peptide antigen processing and presentation via MHC class I|TAP-dependent antigen processing and presentation of exogenous peptide antigen via MHC class I|exogenous peptide antigen processing and presentation via MHC class I, TAP-dependent|cross-presentation|cross presentation biological_process owl:Class GO:0019475 biolink:NamedThing L-lysine catabolic process to acetate The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetate. tmpzr1t_l9r_go_relaxed.owl L-lysine breakdown to acetate|L-lysine degradation to acetate|lysine fermentation MetaCyc:P163-PWY biological_process owl:Class GO:0102151 biolink:NamedThing 3-oxo-myristate decarboxylase activity Catalysis of the reaction: 3-oxo-myristate + H+ <=> 2-tridecanone + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11669|EC:4.1.1.56 molecular_function owl:Class GO:1903288 biolink:NamedThing positive regulation of potassium ion import across plasma membrane Any process that activates or increases the frequency, rate or extent of potassium ion import across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl activation of potassium ion uptake|up-regulation of potassium ion uptake|upregulation of potassium ion uptake|positive regulation of potassium ion uptake|upregulation of potassium import|activation of potassium import|up regulation of potassium import|activation of potassium ion import|up-regulation of potassium ion import|up regulation of potassium ion import|up regulation of potassium ion uptake|upregulation of potassium ion import|positive regulation of potassium ion import|up-regulation of potassium import|positive regulation of potassium import rl 2014-08-11T14:26:32Z biological_process owl:Class GO:1905768 biolink:NamedThing negative regulation of double-stranded telomeric DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of double-stranded telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl down regulation of double-stranded telomeric DNA binding|downregulation of double-stranded telomeric DNA binding|inhibition of double-stranded telomeric DNA binding|down-regulation of double-stranded telomeric DNA binding nc 2016-12-20T15:34:07Z biological_process owl:Class GO:0070807 biolink:NamedThing positive regulation of phialide development Any process that activates or increases the frequency, rate or extent of phialide development, a process that leads to the formation of phialides. Phialides are specialized cells that bud from the ends of metulae on the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:48:08Z biological_process owl:Class GO:0052665 biolink:NamedThing tRNA (uracil-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methyluracil. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA (uracil-2'-O-)-methyltransferase activity|S-adenosyl-L-methionine:tRNA uracil-2'-O-methyltransferase activity|tRNA uracil 2'-methyltransferase activity|tRNA (uracil 2')-methyltransferase activity|transfer ribonucleate uracil 2'-methyltransferase activity|tRNA uracil-2'-O-methyltransferase activity EC:2.1.1.34|RHEA:43100|Reactome:R-HSA-6788707|MetaCyc:RXN0-5143 ai 2010-10-11T01:05:35Z molecular_function owl:Class GO:0099240 biolink:NamedThing intrinsic component of synaptic membrane The component of the synaptic membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to synaptic membrane dos 2017-05-25T17:23:21Z cellular_component owl:Class GO:1904829 biolink:NamedThing regulation of aortic smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of aortic smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl rph 2015-11-24T10:20:40Z biological_process owl:Class GO:0043609 biolink:NamedThing regulation of carbon utilization Any process that modulates the frequency, rate, or extent of carbon utilization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001165 biolink:NamedThing RNA polymerase I cis-regulatory region sequence-specific DNA binding Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase I. RNA polymerase I elements are referred to either enhancers or upstream control element (UCE, or alternately referred to as the upstream element). tmpzr1t_l9r_go_relaxed.owl RNA polymerase I enhancer sequence-specific DNA binding|RNA polymerase I upstream control element sequence-specific DNA binding|RNA polymerase I upstream element sequence-specific DNA binding krc 2011-01-31T05:29:59Z GO:0001166 molecular_function owl:Class GO:0001163 biolink:NamedThing RNA polymerase I transcription regulatory region sequence-specific DNA binding Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I regulatory region DNA binding https://github.com/geneontology/go-ontology/issues/19312 krc 2011-01-31T04:12:06Z GO:0001013 molecular_function owl:Class GO:0007629 biolink:NamedThing flight behavior The response to external or internal stimuli that results in the locomotory process of flight. Flight is the self-propelled movement of an organism through the air. tmpzr1t_l9r_go_relaxed.owl flight behaviour biological_process owl:Class GO:0072013 biolink:NamedThing glomus development The progression of the glomus over time from its initial formation until its mature state. The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment. tmpzr1t_l9r_go_relaxed.owl pronephric glomus development mah 2010-01-25T02:23:19Z biological_process owl:Class GO:0010976 biolink:NamedThing positive regulation of neuron projection development Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites). tmpzr1t_l9r_go_relaxed.owl positive regulation of neurite growth|positive regulation of neurite biosynthesis|positive regulation of neurite development|positive regulation of neurite formation tb 2009-06-01T10:46:44Z biological_process owl:Class GO:0007008 biolink:NamedThing outer mitochondrial membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl outer mitochondrial membrane organization and biogenesis|outer mitochondrial membrane organisation See also the cellular component term 'mitochondrial outer membrane ; GO:0005741'. biological_process owl:Class GO:0051687 biolink:NamedThing maintenance of spindle location Any process in which the spindle is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of spindle localization biological_process owl:Class GO:0046834 biolink:NamedThing lipid phosphorylation The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097561 biolink:NamedThing right caudal flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right caudal basal body, extending cytoplasmically and exiting at the posterior end of the cell body. tmpzr1t_l9r_go_relaxed.owl right caudal cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:31:15Z cellular_component owl:Class GO:0003922 biolink:NamedThing GMP synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: ATP + XMP + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate + 2H(+). tmpzr1t_l9r_go_relaxed.owl GMP synthetase (glutamine-hydrolyzing) activity|xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)|guanosine 5'-monophosphate synthetase activity|glutamine amidotransferase activity|guanosine monophosphate synthetase (glutamine-hydrolyzing)|guanylate synthetase (glutamine-hydrolyzing)|GMP synthase (glutamine-hydrolysing)|xanthosine 5'-phosphate amidotransferase activity|GMP synthetase (glutamine-hydrolysing) MetaCyc:GMP-SYN-GLUT-RXN|EC:6.3.5.2|RHEA:11680|Wikipedia:GMP_synthase_(glutamine-hydrolysing)|Reactome:R-HSA-73792 molecular_function owl:Class GO:0005122 biolink:NamedThing torso binding Binding to a torso (tor) protein, a receptor tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl torso ligand|tor binding|tor ligand molecular_function owl:Class GO:0047344 biolink:NamedThing glucose-1-phosphate guanylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + GTP = diphosphate + GDP-D-glucose. tmpzr1t_l9r_go_relaxed.owl GDP glucose pyrophosphorylase activity|GDP-glucose pyrophosphorylase activity|GTP:alpha-D-glucose-1-phosphate guanylyltransferase activity|GTP:glucose-1-phosphate guanylyltransferase activity|guanosine diphosphoglucose pyrophosphorylase activity|GDP-glucose diphosphorylase activity MetaCyc:2.7.7.34-RXN|EC:2.7.7.34|RHEA:10708|KEGG_REACTION:R00954 molecular_function owl:Class GO:0102104 biolink:NamedThing demethoxycurcumin synthase activity Catalysis of the reaction: (4-coumaroyl)acetyl-CoA + feruloyl-CoA + H2O <=> demethoxycurcumin + 2 coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11224 molecular_function owl:Class GO:1902009 biolink:NamedThing positive regulation of toxin transport Any process that activates or increases the frequency, rate or extent of toxin transport. tmpzr1t_l9r_go_relaxed.owl activation of toxin transport|up regulation of toxin transport|upregulation of toxin transport|up-regulation of toxin transport dph 2013-03-22T12:54:09Z biological_process owl:Class GO:0060370 biolink:NamedThing susceptibility to T cell mediated cytotoxicity The process of causing a cell to become susceptible to T cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070649 biolink:NamedThing formin-nucleated actin cable assembly The aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. tmpzr1t_l9r_go_relaxed.owl formin-nucleated actin cable formation mah 2009-05-12T02:14:36Z biological_process owl:Class GO:0110009 biolink:NamedThing formin-nucleated actin cable organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a formin-nucleated actin cable. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0097500 biolink:NamedThing receptor localization to non-motile cilium A process in which a receptor is transported to, or maintained in, a location within a non-motile cilium. tmpzr1t_l9r_go_relaxed.owl receptor localization to nonmotile primary cilium pr 2013-08-13T12:17:34Z biological_process owl:Class GO:1990850 biolink:NamedThing H-gal-GP complex A membrane glycoprotein complex with aspartyl proteinase and metalloproteinase activity which is expressed in the gut. An example of this is found in the nematode Haemonchus contortus. tmpzr1t_l9r_go_relaxed.owl galactose-containing glycoprotein complex|Haemonchus galactose-containing glycoprotein complex jl 2015-09-10T16:40:39Z cellular_component owl:Class GO:0032670 biolink:NamedThing regulation of interleukin-26 production Any process that modulates the frequency, rate, or extent of interleukin-26 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-26 biosynthetic process|regulation of IL-26 production GO:0045530 biological_process owl:Class GO:0004637 biolink:NamedThing phosphoribosylamine-glycine ligase activity Catalysis of the reaction: 5-phospho-D-ribosylamine + ATP + glycine = N(1)-(5-phospho-D-ribosyl)glycinamide + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoribosylglycinamide synthetase activity|5-phospho-D-ribosylamine:glycine ligase (ADP-forming)|5'-phosphoribosylglycinamide synthetase activity|glycineamide ribonucleotide synthetase activity|GAR|glycinamide ribonucleotide synthetase activity|GARS activity|phosphoribosylglycineamide synthetase activity|GAR synthetase activity|2-amino-N-ribosylacetamide 5'-phosphate kinosynthase activity RHEA:17453|Reactome:R-HSA-73814|MetaCyc:GLYRIBONUCSYN-RXN|KEGG_REACTION:R04144|EC:6.3.4.13 molecular_function owl:Class GO:0032790 biolink:NamedThing ribosome disassembly The disaggregation of a ribosome into its constituent components; includes the dissociation of ribosomal subunits. tmpzr1t_l9r_go_relaxed.owl ribosome recycling|ribosome dissociation factor biological_process owl:Class GO:0006865 biolink:NamedThing amino acid transport The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl GO:0006866 biological_process owl:Class GO:0014039 biolink:NamedThing negative regulation of Schwann cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of Schwann cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of Schwann cell differentiation|down-regulation of Schwann cell differentiation|inhibition of Schwann cell differentiation|downregulation of Schwann cell differentiation biological_process owl:Class GO:0014038 biolink:NamedThing regulation of Schwann cell differentiation Any process that modulates the frequency, rate or extent of Schwann cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061294 biolink:NamedThing mesonephric renal vesicle induction Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the mesonephric renal vesicle. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T12:57:59Z biological_process owl:Class GO:1901106 biolink:NamedThing tetracenomycin C biosynthetic process The chemical reactions and pathways resulting in the formation of tetracenomycin C. tmpzr1t_l9r_go_relaxed.owl tetracenomycin C anabolism|tetracenomycin C synthesis|tetracenomycin C biosynthesis|tetracenomycin C formation yaf 2012-07-11T02:51:03Z biological_process owl:Class GO:0017180 biolink:NamedThing peptidyl-diphthine biosynthetic process from peptidyl-histidine The chemical reactions and pathways resulting in the formation of peptidyl-diphthine from other compounds, including peptidyl-histidine. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthine anabolism from peptidyl-histidine|peptidyl-diphthine formation from peptidyl-histidine|peptidyl-diphthine synthesis from peptidyl-histidine biological_process owl:Class GO:0052472 biolink:NamedThing modulation by host of symbiont transcription Any process in which an organism modulates the frequency, rate or extent of its symbiont's transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102761 biolink:NamedThing eriodictyol 3'-O-methyltransferase activity Catalysis of the reaction: eriodictyol + S-adenosyl-L-methionine <=> H+ + homoeriodictyol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:60948|MetaCyc:RXN-7753 molecular_function owl:Class GO:0019480 biolink:NamedThing L-alanine oxidation to pyruvate via D-alanine The chemical reactions and pathways resulting in the breakdown of L-alanine to pyruvate, with D-alanine as an intermediate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ALADEG-PWY biological_process owl:Class GO:0004359 biolink:NamedThing glutaminase activity Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3. tmpzr1t_l9r_go_relaxed.owl glutamine aminohydrolase activity|L-glutamine amidohydrolase activity|glutaminase I|L-glutaminase activity Reactome:R-HSA-70609|RHEA:15889|EC:3.5.1.2|MetaCyc:GLUTAMIN-RXN molecular_function owl:Class GO:0050193 biolink:NamedThing phosphoketolase activity Catalysis of the reaction: D-xylulose 5-phosphate + phosphate = acetyl phosphate + D-glyceraldehyde 3-phosphate + H2O. tmpzr1t_l9r_go_relaxed.owl D-xylulose-5-phosphate D-glyceraldehyde-3-phosphate-lyase (adding phosphate; acetyl-phosphate-forming)|D-xylulose-5-phosphate D-glyceraldehyde-3-phosphate-lyase (phosphate-acetylating) activity|xylulose-5-phosphate phosphoketolase activity MetaCyc:PHOSPHOKETOLASE-RXN|EC:4.1.2.9|RHEA:10468 molecular_function owl:Class GO:1900308 biolink:NamedThing positive regulation of maltoheptaose transport Any process that activates or increases the frequency, rate or extent of maltoheptaose transport. tmpzr1t_l9r_go_relaxed.owl up regulation of maltoheptaose transport|activation of maltoheptaose transport|upregulation of maltoheptaose transport|up-regulation of maltoheptaose transport tt 2012-04-05T07:58:35Z biological_process owl:Class GO:1900296 biolink:NamedThing positive regulation of heptasaccharide transport Any process that activates or increases the frequency, rate or extent of heptasaccharide transport. tmpzr1t_l9r_go_relaxed.owl upregulation of heptasaccharide transport|up regulation of heptasaccharide transport|activation of heptasaccharide transport|up-regulation of heptasaccharide transport tt 2012-04-05T07:40:58Z biological_process owl:Class GO:0106370 biolink:NamedThing protein-L-histidine N-pros-methyltransferase activity Catalysis of the reaction: L-histidyl-[protein] + S-adenosyl-L-methionine = N(pros)-methyl-L-histidyl-[protein] + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:67076 hjd 2021-03-22T15:13:06Z molecular_function owl:Class GO:1990546 biolink:NamedThing mitochondrial tricarboxylic acid transmembrane transport The process in which a tricarboxylic acid is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:00:14Z biological_process owl:Class GO:0035674 biolink:NamedThing tricarboxylic acid transmembrane transport The process in which a tricarboxylic acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl tricarboxylic acid membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2011-02-08T02:37:31Z biological_process owl:Class GO:1903183 biolink:NamedThing negative regulation of SUMO transferase activity Any process that stops, prevents or reduces the frequency, rate or extent of SUMO ligase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of SUMO conjugating enzyme activity|inhibition of SUMO ligase activity|inhibition of SMT3 conjugating enzyme|negative regulation of SMT3 conjugating enzyme|down regulation of SUMO conjugating enzyme activity|down regulation of SMT3 conjugating enzyme|down regulation of SUMO ligase activity|inhibition of SUMO conjugating enzyme activity|downregulation of SMT3 conjugating enzyme|downregulation of SUMO ligase activity|negative regulation of SUMO conjugating enzyme activity|down-regulation of SUMO ligase activity|downregulation of SUMO conjugating enzyme activity|down-regulation of SMT3 conjugating enzyme bf 2014-07-14T14:01:46Z biological_process owl:Class GO:0033234 biolink:NamedThing negative regulation of protein sumoylation Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of SUMO groups to a protein. tmpzr1t_l9r_go_relaxed.owl negative regulation of sumoylation biological_process owl:Class GO:1904346 biolink:NamedThing positive regulation of gastric mucosal blood circulation Any process that activates or increases the frequency, rate or extent of gastric mucosal blood circulation. tmpzr1t_l9r_go_relaxed.owl upregulation of stomach mucosal blood circulation|up regulation of stomach mucosal blood circulation|activation of stomach mucosal blood circulation|up-regulation of stomach mucosal blood circulation|upregulation of gastric mucosal blood circulation|up-regulation of gastric mucosal blood circulation|positive regulation of stomach mucosal blood circulation|up regulation of gastric mucosal blood circulation|activation of gastric mucosal blood circulation sl 2015-06-11T21:20:50Z biological_process owl:Class GO:0005245 biolink:NamedThing voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl depolarization-activated voltage gated calcium channel activity|voltage gated calcium channel activity|depolarization-activated voltage-gated calcium channel activity|voltage-dependent calcium channel activity|voltage-gated calcium ion channel activity|depolarization-activated calcium channel|depolarization-activated voltage-gated calcium channel|dihydropyridine-sensitive calcium channel activity|voltage-sensitive calcium channel Reactome:R-HSA-9701141|Reactome:R-HSA-5577213|Reactome:R-HSA-9701055|Reactome:R-HSA-265645 GO:0010173|GO:0015270 molecular_function owl:Class GO:0007637 biolink:NamedThing proboscis extension reflex The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a nutritional stimulus. tmpzr1t_l9r_go_relaxed.owl proboscis extension in response to nutritional stimulus|behavioral response to nutritional stimulus, proboscis extension biological_process owl:Class GO:0051780 biolink:NamedThing behavioral response to nutrient Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural response to nutrient biological_process owl:Class GO:0009142 biolink:NamedThing nucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside triphosphate synthesis|nucleoside triphosphate anabolism|nucleoside triphosphate biosynthesis|nucleoside triphosphate formation biological_process owl:Class GO:0000434 biolink:NamedThing carbon catabolite repression of transcription from RNA polymerase II promoter by galactose Any process involving galactose that stops, prevents or reduces the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription from RNA polymerase II promoter by galactose|down-regulation of transcription from RNA polymerase II promoter by galactose|down regulation of transcription from RNA polymerase II promoter by galactose|inhibition of transcription from RNA polymerase II promoter by galactose biological_process owl:Class GO:0000761 biolink:NamedThing conjugant formation During conjugation without cellular fusion, the process that results in pairing complementary mating types. Localized morphological, cytological, and cytoskeletal changes connect the mating types without cytoplasmic mixing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905721 biolink:NamedThing mitotic spindle astral microtubule end Any microtubule end that is part of a mitotic spindle astral microtubule. tmpzr1t_l9r_go_relaxed.owl mitotic spindle astral microtubule tip vw 2016-11-25T12:26:18Z cellular_component owl:Class GO:0102370 biolink:NamedThing lupeol 28-monooxygenase activity Catalysis of the reaction: lupeol + NADPH(4-) + O2 + H+ <=> betulin + NADP(3-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13497 molecular_function owl:Class GO:1900780 biolink:NamedThing fumiquinazoline C catabolic process The chemical reactions and pathways resulting in the breakdown of fumiquinazoline C. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline C degradation|fumiquinazoline C catabolism|fumiquinazoline C breakdown di 2012-06-04T09:30:51Z biological_process owl:Class GO:1900779 biolink:NamedThing fumiquinazoline C metabolic process The chemical reactions and pathways involving fumiquinazoline C. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline C metabolism di 2012-06-04T09:30:30Z biological_process owl:Class GO:0034125 biolink:NamedThing negative regulation of MyD88-dependent toll-like receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of MyD88-dependent toll-like receptor signalling pathway|negative regulation of MyD88-dependent TLR signaling pathway biological_process owl:Class GO:0034753 biolink:NamedThing nuclear aryl hydrocarbon receptor complex An aryl hydrocarbon receptor (AhR) complex found in the nucleus; ; consists of ligand-bound AhR and the aryl hydrocarbon receptor nuclear translocator (ARNT). tmpzr1t_l9r_go_relaxed.owl nuclear AHRC|nuclear AhR complex|6S-nuclear aryl hydrocarbon (Ah) receptor ligand-activated complex cellular_component owl:Class GO:0003090 biolink:NamedThing positive regulation of the force of heart contraction by neuronal epinephrine-norepinephrine Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine released from the nerve endings. tmpzr1t_l9r_go_relaxed.owl increased force of heart contraction by neuronal epinephrine-norepinephrine|increased force of heart contraction by epinephrine-norepinephrine released from the nerve endings|increased force of heart contraction by neuronal adrenaline-noradrenaline|positive regulation of heart contraction by epinephrine-norepinephrine|positive regulation of heart contraction by adrenaline-noradrenaline biological_process owl:Class GO:0097116 biolink:NamedThing gephyrin clustering involved in postsynaptic density assembly The clustering process in which gephyrin molecules are localized to distinct domains in the postsynaptic density as part of postsynaptic density assembly. Gephyrin is a component of the postsynaptic protein network of inhibitory synapses. tmpzr1t_l9r_go_relaxed.owl Geph clustering pr 2011-07-31T05:42:29Z biological_process owl:Class GO:0075331 biolink:NamedThing negative regulation of arbuscule formation for nutrient acquisition from host Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0005876 biolink:NamedThing spindle microtubule Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010693 biolink:NamedThing negative regulation of alkaline phosphatase activity Any process that decreases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103035 biolink:NamedThing NAD(P)H:methyl-1,4-benzoquinone oxidoreductase activity Catalysis of the reaction: 3 H+ + methyl-1,4-benzoquinone + NADPH = methyl-1,4-benzoquinol + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5387 molecular_function owl:Class GO:1901347 biolink:NamedThing negative regulation of secondary cell wall biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of secondary cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of secondary cell wall biogenesis|inhibition of secondary cell wall biogenesis|inhibition of plant-type secondary cell wall biogenesis|negative regulation of plant-type secondary cell wall biogenesis|down regulation of secondary cell wall formation|downregulation of secondary cell wall synthesis|down regulation of cellulose and pectin-containing secondary cell wall biogenesis|inhibition of secondary cell wall anabolism|downregulation of cellulose and pectin-containing secondary cell wall biogenesis|downregulation of secondary cell wall formation|downregulation of secondary cell wall biosynthetic process|down-regulation of plant-type secondary cell wall biogenesis|inhibition of secondary cell wall synthesis|down-regulation of secondary cell wall biosynthetic process|inhibition of secondary cell wall biosynthetic process|negative regulation of secondary cell wall biosynthetic process|downregulation of secondary cell wall anabolism|down regulation of plant-type secondary cell wall biogenesis|down regulation of secondary cell wall synthesis|negative regulation of secondary cell wall formation|negative regulation of cellulose and pectin-containing secondary cell wall biogenesis|negative regulation of secondary cell wall anabolism|negative regulation of secondary cell wall synthesis|down-regulation of secondary cell wall formation|down regulation of secondary cell wall biosynthetic process|down-regulation of secondary cell wall synthesis|down regulation of secondary cell wall anabolism|inhibition of cellulose and pectin-containing secondary cell wall biogenesis|down-regulation of secondary cell wall biogenesis|down regulation of secondary cell wall biogenesis|down-regulation of secondary cell wall anabolism|inhibition of secondary cell wall formation|downregulation of plant-type secondary cell wall biogenesis|down-regulation of cellulose and pectin-containing secondary cell wall biogenesis tb 2012-09-07T17:58:05Z biological_process owl:Class GO:0033251 biolink:NamedThing cephalosporinase activity Catalysis of the reaction: a cephalosporin + H2O = a substituted beta-amino acid derivative of the cephalosporin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:BETA-LACTAMASE-RXN molecular_function owl:Class GO:0061856 biolink:NamedThing Golgi calcium ion transmembrane transport A process in which a calcium ion is transported from one side of a Golgi membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dph 2017-03-14T16:08:23Z biological_process owl:Class GO:0032472 biolink:NamedThing Golgi calcium ion transport The directed movement of calcium ions (Ca2+) into, out of or within the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl Golgi calcium transport biological_process owl:Class GO:0071028 biolink:NamedThing nuclear mRNA surveillance The set of processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA quality control|nuclear aberrant mRNA catabolic process krc 2009-07-28T04:14:29Z biological_process owl:Class GO:0071027 biolink:NamedThing nuclear RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear aberrant RNA catabolic process|nuclear RNA quality control krc 2009-07-28T03:45:02Z biological_process owl:Class GO:0006873 biolink:NamedThing cellular ion homeostasis Any process involved in the maintenance of an internal steady state of ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903061 biolink:NamedThing positive regulation of protein lipidation Any process that activates or increases the frequency, rate or extent of protein lipidation. tmpzr1t_l9r_go_relaxed.owl up-regulation of lipid:protein modification|up-regulation of protein amino acid lipidation|activation of protein lipidation|upregulation of protein amino acid lipidation|activation of lipid:protein modification|up regulation of lipid:protein modification|up-regulation of protein lipidation|up regulation of protein amino acid lipidation|upregulation of protein lipidation|upregulation of lipid:protein modification|activation of protein amino acid lipidation|up regulation of protein lipidation|positive regulation of lipid:protein modification|positive regulation of protein amino acid lipidation rph 2014-05-28T13:21:31Z biological_process owl:Class GO:0008974 biolink:NamedThing phosphoribulokinase activity Catalysis of the reaction: D-ribulose 5-phosphate + ATP = D-ribulose 1,5-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ribulose phosphate kinase activity|PKK|PRuK|phosphopentokinase activity|ribulose-5-phosphate kinase activity|5-phosphoribulose kinase activity|PRK|ATP:D-ribulose-5-phosphate 1-phosphotransferase activity|phosphoribulokinase (phosphorylating) RHEA:19365|EC:2.7.1.19|KEGG_REACTION:R01523|MetaCyc:PHOSPHORIBULOKINASE-RXN molecular_function owl:Class GO:0031437 biolink:NamedThing regulation of mRNA cleavage Any process that modulates the frequency, rate or extent of mRNA cleavage, any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990676 biolink:NamedThing Golgi trans cisterna membrane The lipid bilayer surrounding any of the thin, flattened compartments that form the trans portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl trans-Golgi cisterna membrane bhm 2015-03-02T11:53:35Z cellular_component owl:Class GO:0032580 biolink:NamedThing Golgi cisterna membrane The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl Golgi stack membrane cellular_component owl:Class GO:0033774 biolink:NamedThing basal labyrinth A region in the lower half of some cells formed from extensive infoldings of the basal plasma membrane; includes cytoplasm adjacent to the infolded membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019353 biolink:NamedThing protoporphyrinogen IX biosynthetic process from glutamate The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen IX synthesis from glutamate|protoporphyrinogen IX formation from glutamate|protoporphyrinogen IX anabolism from glutamate biological_process owl:Class GO:0015434 biolink:NamedThing ABC-type cadmium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cd (cytosol) = ADP + phosphate + Cd (vacuole). tmpzr1t_l9r_go_relaxed.owl cadmium ABC transporter|ATP-dependent cadmium transmembrane transporter activity|cadmium-transporting ATPase activity|ATPase-coupled cadmium transmembrane transporter activity EC:7.2.2.2|MetaCyc:3.6.3.46-RXN molecular_function owl:Class GO:0015086 biolink:NamedThing cadmium ion transmembrane transporter activity Enables the transfer of cadmium (Cd) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium uptake permease activity|zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity molecular_function owl:Class GO:0036120 biolink:NamedThing cellular response to platelet-derived growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet-derived growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to PDGF stimulus bf 2012-02-20T02:49:02Z biological_process owl:Class GO:0052151 biolink:NamedThing positive regulation by symbiont of host apoptotic process Any process in which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the host, where programmed cell death proceeds by apoptosis. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by symbiont of host apoptosis|stimulation by symbiont of host apoptosis|up-regulation by symbiont of host apoptosis|up regulation by organism of host apoptotic programmed cell death|up-regulation by organism of host apoptotic programmed cell death|upregulation by organism of host apoptotic programmed cell death|up regulation by symbiont of host apoptosis|positive regulation by organism of host apoptotic programmed cell death|activation by symbiont of host apoptosis|activation by organism of host apoptotic programmed cell death|induction by organism of host apoptotic programmed cell death|induction by symbiont of host apoptosis|positive regulation by symbiont of host apoptosis|activation by organism of host apoptosis Note that term is to be used to annotate gene products in the symbiont. To annotate host gene products, consider the biological process term 'positive regulation of apoptosis ; GO:0043065'. GO:0033669|GO:0052030 biological_process owl:Class GO:0007447 biolink:NamedThing imaginal disc pattern formation The regionalization process that results in defined areas of the imaginal disc that will undergo specific cell differentaiton. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult appendages (legs, antennae, wings, etc.) during metamorphosis from larval to adult form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044774 biolink:NamedThing mitotic DNA integrity checkpoint signaling A signaling process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA during mitosis. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and ends with signal transduction. tmpzr1t_l9r_go_relaxed.owl intracellular signal transduction involved in topo II checkpoint|signal transduction via intracellular signaling cascade involved in mitotic cell cycle G2/M transition decatenation checkpoint|intracellular signaling pathway involved in topo II checkpoint|intracellular signaling pathway involved in topoisomerase II checkpoint|intracellular signal transduction involved in mitotic cell cycle G2/M transition decatenation checkpoint|signal transduction involved in mitotic DNA integrity checkpoint|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic DNA integrity checkpoint|intracellular signal transduction pathway involved in mitotic DNA integrity checkpoint|signal transduction via intracellular signaling cascade involved in topo II checkpoint|intracellular signal transduction pathway involved in topo II checkpoint|intracellular signaling cascade involved in mitotic DNA integrity checkpoint|intracellular signal transduction pathway involved in topoisomerase II checkpoint|intracellular signaling chain involved in mitotic DNA integrity checkpoint|intracellular signaling pathway involved in mitotic DNA integrity checkpoint|intracellular signaling cascade involved in topo II checkpoint|intracellular signaling pathway involved in mitotic cell cycle G2/M transition decatenation checkpoint|intracellular signal transduction pathway involved in mitotic cell cycle G2/M transition decatenation checkpoint|intracellular signaling cascade involved in mitotic cell cycle G2/M transition decatenation checkpoint|intracellular signaling chain involved in mitotic cell cycle G2/M transition decatenation checkpoint jl 2013-02-28T16:07:26Z GO:1902403|GO:0070683 biological_process owl:Class GO:0031849 biolink:NamedThing olfactory receptor binding Binding to an olfactory receptor. tmpzr1t_l9r_go_relaxed.owl olfactory receptor ligand molecular_function owl:Class GO:0015408 biolink:NamedThing ABC-type ferric iron transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Fe3+(out) = ADP + phosphate + Fe3+(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled ferric iron transmembrane transporter activity|ferric-transporting ATPase activity|ferric transporting ATPase activity|Fe3+-transporting ATPase activity|ferric ABC transporter|ABC-type Fe3+ transporter MetaCyc:3.6.3.30-RXN|RHEA:12332|EC:7.2.2.7 molecular_function owl:Class GO:0043030 biolink:NamedThing regulation of macrophage activation Any process that modulates the frequency or rate of macrophage activation. tmpzr1t_l9r_go_relaxed.owl regulation of macrophage polarization biological_process owl:Class GO:0033893 biolink:NamedThing ribonuclease IV activity Catalysis of the endonucleolytic cleavage of poly(A) to fragments terminated by 3'-hydroxy and 5'-phosphate groups. tmpzr1t_l9r_go_relaxed.owl endoribonuclease IV activity MetaCyc:3.1.26.6-RXN|EC:3.1.26.6 molecular_function owl:Class GO:0034073 biolink:NamedThing tetrahymanol cyclase activity Catalysis of the reaction: squalene = tetrahymanol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000620 biolink:NamedThing positive regulation of histone H4-K16 acetylation Any process that activates or increases the frequency, rate or extent of histone H4-K16 acetylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of histone H4 acetylation at K16 vk 2011-04-18T03:19:30Z biological_process owl:Class GO:2000618 biolink:NamedThing regulation of histone H4-K16 acetylation Any process that modulates the frequency, rate or extent of histone H4-K16 acetylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H4 acetylation at K16 vk 2011-04-18T03:19:23Z biological_process owl:Class GO:0061442 biolink:NamedThing cardiac muscle cell fate determination The process involved in cardiac muscle cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T08:59:57Z biological_process owl:Class GO:0060913 biolink:NamedThing cardiac cell fate determination The process involved in cardiac cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl cardiocyte cell fate determination dph 2009-09-17T08:55:29Z biological_process owl:Class GO:1901378 biolink:NamedThing organic heteropentacyclic compound biosynthetic process The chemical reactions and pathways resulting in the formation of organic heteropentacyclic compound. tmpzr1t_l9r_go_relaxed.owl organic heteropentacyclic compound biosynthesis|organic heteropentacyclic compound formation|organic heteropentacyclic compound synthesis|organic heteropentacyclic compound anabolism bf 2012-09-28T12:52:09Z biological_process owl:Class GO:0008870 biolink:NamedThing galactoside O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + a beta-D-galactoside = CoA + a 6-acetyl-beta-D-galactoside. tmpzr1t_l9r_go_relaxed.owl thiogalactoside acetyltransferase activity|acetyl-CoA:beta-D-galactoside 6-acetyltransferase activity|galactoside acetyltransferase activity|thiogalactoside transacetylase activity RHEA:15713|EC:2.3.1.18|MetaCyc:GALACTOACETYLTRAN-RXN molecular_function owl:Class GO:0072070 biolink:NamedThing loop of Henle development The process whose specific outcome is the progression of the loop of Henle over time, from its formation to the mature structure. The loop of Henle is a nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule. tmpzr1t_l9r_go_relaxed.owl intermediate tubule development mah 2010-01-25T04:20:27Z GO:0072018 biological_process owl:Class GO:0043059 biolink:NamedThing regulation of forward locomotion Any process that modulates the speed, mechanical force, or rhythm of the anterior movement of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050570 biolink:NamedThing 4-hydroxythreonine-4-phosphate dehydrogenase activity Catalysis of the reaction: 4-(phosphonooxy)-threonine + NAD+ = 2-amino-3-oxo-4-phosphonooxybutyrate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD(+)-dependent threonine 4-phosphate dehydrogenase activity|NAD+-dependent threonine 4-phosphate dehydrogenase activity|4-(phosphonooxy)-L-threonine:NAD+ oxidoreductase activity|PdxA|L-threonine 4-phosphate dehydrogenase activity|4-(phosphohydroxy)-L-threonine dehydrogenase activity EC:1.1.1.262|MetaCyc:1.1.1.262-RXN|RHEA:32275 molecular_function owl:Class GO:0030199 biolink:NamedThing collagen fibril organization Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix. tmpzr1t_l9r_go_relaxed.owl collagen fibril organisation|fibrillar collagen organization biological_process owl:Class GO:0042605 biolink:NamedThing peptide antigen binding Binding to an antigen peptide. tmpzr1t_l9r_go_relaxed.owl exogenous peptide antigen binding|endogenous peptide antigen binding Note that this term can be used to describe the binding of a peptide to an MHC molecule. GO:0042606|GO:0042607 molecular_function owl:Class GO:0051156 biolink:NamedThing glucose 6-phosphate metabolic process The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. tmpzr1t_l9r_go_relaxed.owl glucose 6-phosphate metabolism|glucose 6-phosphate utilization GO:0006010 biological_process owl:Class GO:0102737 biolink:NamedThing p-coumaroyltriacetic acid synthase activity Catalysis of the reaction: 2 H+ + 4-coumaryl-CoA + H2O + 3 malonyl-CoA <=> 4 coenzyme A + 3 carbon dioxide + p-coumaroyltriacetate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7577 molecular_function owl:Class GO:0035223 biolink:NamedThing leg disc pattern formation The process that gives rise to the patterns of cell differentiation in the leg imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032385 biolink:NamedThing positive regulation of intracellular cholesterol transport Any process that activates or increases the frequency, rate or extent of the directed movement of cholesterol within cells. tmpzr1t_l9r_go_relaxed.owl up-regulation of intracellular cholesterol transport|up regulation of intracellular cholesterol transport|stimulation of intracellular cholesterol transport|activation of intracellular cholesterol transport|upregulation of intracellular cholesterol transport biological_process owl:Class GO:0075274 biolink:NamedThing negative regulation of zygosporangium development Any process that stops, prevents, or reduces the frequency, rate or extent of zygosporangium development, a process in which a fruiting body called zygosporangium is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042754 biolink:NamedThing negative regulation of circadian rhythm Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior. tmpzr1t_l9r_go_relaxed.owl inhibition of circadian rhythm|down-regulation of circadian rhythm|down regulation of circadian rhythm|downregulation of circadian rhythm biological_process owl:Class GO:1902558 biolink:NamedThing 5'-adenylyl sulfate transmembrane transport The process in which 5'-adenylyl sulfate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl adenosine 5'-phosphosulfate transmembrane transport mcc 2013-12-09T23:16:01Z biological_process owl:Class GO:1990941 biolink:NamedThing mitotic spindle kinetochore microtubule Any of the mitotic spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic chromosome segregation. tmpzr1t_l9r_go_relaxed.owl vw 2016-04-06T13:31:38Z cellular_component owl:Class GO:1990498 biolink:NamedThing mitotic spindle microtubule Any microtubule that is part of a mitotic spindle; anchored at one spindle pole. tmpzr1t_l9r_go_relaxed.owl vw 2014-09-26T13:34:40Z cellular_component owl:Class GO:1902112 biolink:NamedThing cellular response to diethyl maleate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diethyl maleate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2013-05-08T16:00:40Z biological_process owl:Class GO:1904911 biolink:NamedThing negative regulation of establishment of RNA localization to telomere Any process that stops, prevents or reduces the frequency, rate or extent of establishment of RNA localization to telomere. tmpzr1t_l9r_go_relaxed.owl down-regulation of establishment of RNA localization to telomere|down-regulation of establishment of RNA localisation to telomere|inhibition of establishment of RNA localisation to telomere|downregulation of establishment of RNA localisation to telomere|downregulation of establishment of RNA localization to telomere|down regulation of establishment of RNA localisation to telomere|negative regulation of establishment of RNA localisation to telomere|inhibition of establishment of RNA localization to telomere|down regulation of establishment of RNA localization to telomere rph 2016-01-19T10:34:28Z biological_process owl:Class GO:1905711 biolink:NamedThing response to phosphatidylethanolamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phosphatidylethanolamine stimulus. tmpzr1t_l9r_go_relaxed.owl response to PtdEtn|response to phosphatidylethanolamines|response to phosphatidyl(amino)ethanols|response to PE sl 2016-11-21T19:55:32Z biological_process owl:Class GO:0022834 biolink:NamedThing ligand-gated channel activity Enables the transmembrane transfer of a solute by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901354 biolink:NamedThing response to L-canavanine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-canavanine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-13T13:11:17Z biological_process owl:Class GO:0004436 biolink:NamedThing phosphatidylinositol diacylglycerol-lyase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol = D-myo-inositol 1,2-cyclic phosphate + diacylglycerol. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-D-myo-inositol inositolphosphohydrolase (cyclic-phosphate-forming)|1-phosphatidyl-1D-myo-inositol diacyl-sn-glycerol-lyase (1D-myo-inositol-1,2-cyclic-phosphate-forming)|1-phosphatidyl-1D-myo-inositol diacylglycerol-lyase (1,2-cyclic-phosphate-forming)|1-phosphatidylinositol phosphodiesterase activity|monophosphatidylinositol phosphodiesterase activity EC:4.6.1.13|MetaCyc:3.1.4.10-RXN|RHEA:17093 Note that this function was formerly EC:3.1.4.10. molecular_function owl:Class GO:0051096 biolink:NamedThing positive regulation of helicase activity Any process that activates or increases the activity of a helicase. tmpzr1t_l9r_go_relaxed.owl up-regulation of helicase activity|up regulation of helicase activity|stimulation of helicase activity|upregulation of helicase activity|activation of helicase activity biological_process owl:Class GO:0035002 biolink:NamedThing liquid clearance, open tracheal system The clearance of liquid from the epithelial tubes of an open tracheal system, shortly before the emergence of the larva, to generate an air-filled tubule system. tmpzr1t_l9r_go_relaxed.owl tracheal liquid clearance biological_process owl:Class GO:0042045 biolink:NamedThing epithelial fluid transport The directed movement of fluid across epithelia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035543 biolink:NamedThing positive regulation of SNARE complex assembly Any process that increases the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-10T01:50:02Z biological_process owl:Class GO:0036509 biolink:NamedThing trimming of terminal mannose on B branch The removal of an alpha-1,2-linked mannose from the B-chain of a glycoprotein oligosaccharide in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl conversion of M9 to M8B|conversion of (Man)9(GlcNAc)2 to (Man)8B(GlcNAc)2|glycoprotein mannose trimming on B branch KEGG_REACTION:R06722 Consider also annotating to 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T14:02:44Z biological_process owl:Class GO:0042627 biolink:NamedThing chylomicron A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chylomicron cellular_component owl:Class GO:1905288 biolink:NamedThing vascular associated smooth muscle cell apoptotic process Any apoptotic process in a vascular associated smooth muscle cell. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell apoptotic process|VSMC apoptosis|VSMC apoptotic process|vascular associated smooth muscle cell apoptosis|vascular smooth muscle cell apoptosis rph 2016-06-23T13:24:20Z biological_process owl:Class GO:0034390 biolink:NamedThing smooth muscle cell apoptotic process Any apoptotic process in a smooth muscle cell. Smooth muscle consists of non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. tmpzr1t_l9r_go_relaxed.owl SMC apoptosis|smooth muscle cell programmed cell death by apoptosis|programmed cell death, smooth muscle cells|smooth muscle cell apoptosis|apoptosis of smooth muscle cells|programmed cell death of smooth muscle cells by apoptosis biological_process owl:Class GO:0071123 biolink:NamedThing alpha9-beta1 integrin-VEGF-C complex A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor C. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-VEGFC complex mah 2009-11-13T02:22:27Z cellular_component owl:Class GO:0048440 biolink:NamedThing carpel development The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. tmpzr1t_l9r_go_relaxed.owl GO:0048429 biological_process owl:Class GO:0048827 biolink:NamedThing phyllome development The process whose specific outcome is the progression of a phyllome over time, from its formation to the mature structure. A phyllome is a collective term for all the different types of leaves appearing on plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031906 biolink:NamedThing late endosome lumen The volume enclosed by the membrane of a late endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140708 biolink:NamedThing CAT tailing The C-terminal elongation of 60S-anchored stalled nascent polypeptide chains with untemplated alanine and threonine tails (CAT tails). CAT tails participate in the recognition of stalled nascent chains by the ribosome quality control sytem. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21987 pg 2021-09-03T13:16:20Z biological_process owl:Class GO:0030835 biolink:NamedThing negative regulation of actin filament depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of actin depolymerization. tmpzr1t_l9r_go_relaxed.owl negative regulation of actin polymerization and/or depolymerization|negative regulation of actin depolymerization|down-regulation of actin filament depolymerization|downregulation of actin filament depolymerization|down regulation of actin filament depolymerization|inhibition of actin filament depolymerization|actin filament stabilization Note that this term was split from 'negative regulation of actin polymerization and/or depolymerization ; GO:0045757' (sibling term 'negative regulation of actin polymerization ; GO:0030837'). GO:0030044 biological_process owl:Class GO:0035330 biolink:NamedThing regulation of hippo signaling Any process that modulates the frequency, rate or extent of hippo signaling. tmpzr1t_l9r_go_relaxed.owl regulation of hippo signaling pathway|regulation of hippo signalling cascade|regulation of hippo signaling cascade bf 2010-02-26T10:53:05Z biological_process owl:Class GO:0072188 biolink:NamedThing metanephric cap specification The process in which the metanephric cap acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:35:25Z biological_process owl:Class GO:0018964 biolink:NamedThing propylene metabolic process The chemical reactions and pathways involving propylene, an alkene produced by catalytic or thermal cracking of hydrocarbons or as a by-product of petroleum refining. It is used mainly in the preparation of alkylates for gasoline and in the production of polypropylene, acrylonitrile, propylene oxide and a number of other industrial chemicals. tmpzr1t_l9r_go_relaxed.owl propylene metabolism UM-BBD_pathwayID:pro biological_process owl:Class GO:0019597 biolink:NamedThing (R)-mandelate catabolic process to benzoate The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including benzoate. tmpzr1t_l9r_go_relaxed.owl (R)-mandelate breakdown to benzoate|(R)-mandelate degradation to benzoate biological_process owl:Class GO:0022900 biolink:NamedThing electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21455 Wikipedia:Electron_transport_chain biological_process owl:Class GO:0043608 biolink:NamedThing formamide catabolic process The chemical reactions and pathways resulting in the breakdown of formamide, the simplest amide, HCONH2, derived from formic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006146 biolink:NamedThing adenine catabolic process The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. tmpzr1t_l9r_go_relaxed.owl adenine degradation|adenine breakdown|adenine catabolism biological_process owl:Class GO:0120287 biolink:NamedThing regulation of aspartic endopeptidase activity, intramembrane cleaving Any process that modulates the frequency, rate or extent of intramembrane cleaving aspartic-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20341 krc 2020-11-19T22:06:06Z biological_process owl:Class GO:0034637 biolink:NamedThing cellular carbohydrate biosynthetic process The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006267 biolink:NamedThing pre-replicative complex assembly involved in nuclear cell cycle DNA replication The aggregation, arrangement and bonding together of a set of components to form the nuclear pre-replicative complex, a protein-DNA complex that forms at the eukaryotic DNA replication origin and is required for replication initiation. tmpzr1t_l9r_go_relaxed.owl pre-replicative complex formation|nuclear pre-replicative complex assembly|pre-replicative complex assembly|pre-RC complex assembly biological_process owl:Class GO:0004525 biolink:NamedThing ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. tmpzr1t_l9r_go_relaxed.owl pre-mRNA 3'-end processing endonuclease|ribonuclease 3 activity|RNase III activity Reactome:R-HSA-203862|Reactome:R-HSA-426464|Reactome:R-HSA-203893|EC:3.1.26.3|MetaCyc:3.1.26.3-RXN molecular_function owl:Class GO:0008836 biolink:NamedThing diaminopimelate decarboxylase activity Catalysis of the reaction: meso-2,6-diaminopimelate + H(+) = L-lysine + CO(2). tmpzr1t_l9r_go_relaxed.owl meso-diaminopimelate decarboxylase activity|meso-2,6-diaminoheptanedioate carboxy-lyase activity|meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming)|diaminopimelic acid decarboxylase activity|DAP-decarboxylase activity|DAP decarboxylase activity KEGG_REACTION:R00451|RHEA:15101|EC:4.1.1.20|MetaCyc:DIAMINOPIMDECARB-RXN molecular_function owl:Class GO:0034936 biolink:NamedThing 4,6-dichloro-3-methylcatechol 1,2-dioxygenase activity Catalysis of the reaction: 4,6-dichloro-3-methylcatechol + O2 = 3,5-dichloro-3-methyl-cis,cis-muconate + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0959 molecular_function owl:Class GO:1903305 biolink:NamedThing regulation of regulated secretory pathway Any process that modulates the frequency, rate or extent of regulated secretory pathway. tmpzr1t_l9r_go_relaxed.owl An example of this is protein domain-specific expression of Synaptotagmin 1 in rat (P21707) in PMID:12526776 inferred from mutant phenotype. pad 2014-08-18T10:04:53Z biological_process owl:Class GO:0046196 biolink:NamedThing 4-nitrophenol catabolic process The chemical reactions and pathways resulting in the breakdown of 4-nitrophenol, a nitroaromatic compound which is used in the production of dyes, leather treatment agents, fungicides and as an intermediate in the production of the insecticide parathion. tmpzr1t_l9r_go_relaxed.owl 4-nitrophenol degradation|4-nitrophenol breakdown|4-nitrophenol catabolism biological_process owl:Class GO:1904841 biolink:NamedThing TORC2 complex binding Binding to a TORC2 complex. tmpzr1t_l9r_go_relaxed.owl TORC 2 complex binding|TORC2 binding|TOR complex 2 binding|rapamycin and nutrient-insensitive TOR complex binding|mTORC2 binding Binding to a TORC2 complex, a protein complex that mediates the phosphorylation of protein kinase B pf 2015-12-07T16:59:44Z molecular_function owl:Class GO:0071406 biolink:NamedThing cellular response to methylmercury Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to CH3-Hg+|cellular response to MeHg+ mah 2009-12-14T02:55:12Z biological_process owl:Class GO:0060183 biolink:NamedThing apelin receptor signaling pathway The series of molecular signals generated as a consequence of an apelin receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl apelin receptor signalling pathway biological_process owl:Class GO:0002914 biolink:NamedThing regulation of central B cell anergy Any process that modulates the frequency, rate, or extent of central B cell anergy. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904246 biolink:NamedThing negative regulation of polynucleotide adenylyltransferase activity Any process that stops, prevents or reduces the frequency, rate or extent of polynucleotide adenylyltransferase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of ATP:polynucleotide adenylyltransferase activity|negative regulation of NTP polymerase activity|inhibition of polyadenylic polymerase activity|downregulation of polyadenylic polymerase activity|down regulation of polynucleotide adenylyltransferase activity|down-regulation of ATP:polynucleotidylexotransferase activity|down-regulation of polyadenylate polymerase activity|down regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|down-regulation of poly(A) hydrolase activity|inhibition of polyadenylate synthetase activity|down regulation of poly(A) polymerase activity|negative regulation of ATP-polynucleotide adenylyltransferase activity|down-regulation of ATP:polynucleotide adenylyltransferase activity|negative regulation of poly(A) synthetase activity|inhibition of RNA adenylating enzyme activity|down regulation of polyadenylate synthetase activity|negative regulation of AMP polynucleotidylexotransferase activity|negative regulation of terminal riboadenylate transferase activity|down regulation of poly(A) synthetase activity|inhibition of poly-A polymerase activity|negative regulation of poly(A) hydrolase activity|down-regulation of RNA formation factors, PF1|downregulation of terminal riboadenylate transferase activity|down regulation of AMP polynucleotidylexotransferase activity|down regulation of ATP:polynucleotide adenylyltransferase activity|inhibition of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|downregulation of AMP polynucleotidylexotransferase activity|negative regulation of polyadenylic polymerase activity|down-regulation of AMP polynucleotidylexotransferase activity|inhibition of AMP polynucleotidylexotransferase activity|down regulation of polyadenylate polymerase activity|downregulation of polyadenylate nucleotidyltransferase activity|inhibition of polynucleotide adenylyltransferase activity|downregulation of polyadenylic acid polymerase activity|down regulation of polyadenylic polymerase activity|negative regulation of poly-A polymerase activity|down-regulation of NTP polymerase activity|inhibition of poly(A) polymerase activity|downregulation of poly(A) synthetase activity|negative regulation of ATP:polynucleotidylexotransferase activity|downregulation of RNA adenylating enzyme activity|negative regulation of ATP:polynucleotide adenylyltransferase activity|inhibition of polyadenylic acid polymerase activity|inhibition of RNA formation factors, PF1|downregulation of polynucleotide adenylyltransferase activity|inhibition of polyadenylate polymerase activity|negative regulation of polyadenylic acid polymerase activity|down regulation of polyadenylic acid polymerase activity|inhibition of NTP polymerase activity|inhibition of ATP:polynucleotidylexotransferase activity|inhibition of terminal riboadenylate transferase activity|downregulation of RNA formation factors, PF1|inhibition of poly(A) hydrolase activity|down regulation of poly-A polymerase activity|downregulation of NTP polymerase activity|down-regulation of RNA adenylating enzyme activity|down-regulation of polyadenylic polymerase activity|down-regulation of poly(A) polymerase activity|negative regulation of polyadenylate synthetase activity|down regulation of ATP:polynucleotidylexotransferase activity|down-regulation of poly(A) synthetase activity|down-regulation of ATP-polynucleotide adenylyltransferase activity|inhibition of polyadenylate nucleotidyltransferase activity|down-regulation of terminal riboadenylate transferase activity|down regulation of RNA formation factors, PF1|negative regulation of poly(A) polymerase activity|negative regulation of RNA adenylating enzyme activity|downregulation of poly-A polymerase activity|down regulation of NTP polymerase activity|negative regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|down-regulation of polynucleotide adenylyltransferase activity|down-regulation of polyadenylic acid polymerase activity|down-regulation of poly-A polymerase activity|downregulation of ATP:polynucleotidylexotransferase activity|downregulation of polyadenylate polymerase activity|negative regulation of polyadenylate nucleotidyltransferase activity|down regulation of terminal riboadenylate transferase activity|negative regulation of RNA formation factors, PF1|downregulation of ATP:polynucleotide adenylyltransferase activity|down regulation of poly(A) hydrolase activity|inhibition of poly(A) synthetase activity|down regulation of ATP-polynucleotide adenylyltransferase activity|negative regulation of polyadenylate polymerase activity|downregulation of poly(A) hydrolase activity|downregulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|down regulation of RNA adenylating enzyme activity|down-regulation of polyadenylate nucleotidyltransferase activity|inhibition of ATP-polynucleotide adenylyltransferase activity|downregulation of poly(A) polymerase activity|down-regulation of polyadenylate synthetase activity|downregulation of polyadenylate synthetase activity|down regulation of polyadenylate nucleotidyltransferase activity|down-regulation of adenosine triphosphate:ribonucleic acid adenylyltransferase activity|downregulation of ATP-polynucleotide adenylyltransferase activity kmv 2015-05-19T14:47:26Z biological_process owl:Class GO:0047120 biolink:NamedThing (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate dehydrogenase activity Catalysis of the reaction: (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate + NAD(+) = 3,4-dihydroxybenzoate + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl (1R,2S)-dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase activity|terephthalate 1,2-cis-dihydrodiol dehydrogenase activity|dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase activity|(3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate:NAD+ oxidoreductase activity|cis-4,5-dihydroxycyclohexa-1(6),2-diene-1,4-dicarboxylate:NAD+ oxidoreductase (decarboxylating) RHEA:10744|UM-BBD_reactionID:r0151|MetaCyc:1.3.1.53-RXN|KEGG_REACTION:R01633|EC:1.3.1.53 GO:0018514 molecular_function owl:Class GO:0050613 biolink:NamedThing delta14-sterol reductase activity Catalysis of the reaction: NADP+ + 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol = NADPH + H+ + 4,4-dimethyl-5-alpha-cholesta-8,14,24-trien-3-beta-ol. tmpzr1t_l9r_go_relaxed.owl C-14 sterol reductase activity|sterol C-14 reductase activity|sterol C14-reductase activity|4,4-dimethyl-5alpha-cholesta-8,24-dien-3beta-ol:NADP+ delta14-oxidoreductase activity|D14-sterol reductase activity RHEA:18561|Reactome:R-HSA-194698|Reactome:R-HSA-194674|MetaCyc:1.3.1.70-RXN|EC:1.3.1.70 Note that zymosterol is cholesta-8,24-dien-3-ol. GO:0000251 molecular_function owl:Class GO:0008746 biolink:NamedThing NAD(P)+ transhydrogenase activity Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD transhydrogenase|pyridine nucleotide transferase|NADPH-NAD transhydrogenase|NADPH:NAD+ transhydrogenase|nicotinamide adenine dinucleotide (phosphate) transhydrogenase|NADH-NADP-transhydrogenase|NADPH-NAD oxidoreductase|energy-linked transhydrogenase|H+-thase|NADH transhydrogenase RHEA:11692|EC:1.6.1.1|KEGG_REACTION:R00112|Reactome:R-HSA-450971 molecular_function owl:Class GO:0016652 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces NAD+ or NADP. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NAD or NADPH, NAD or NADP as acceptor EC:1.6.1.- molecular_function owl:Class GO:1905327 biolink:NamedThing tracheoesophageal septum formation The process that gives rise to the tracheoesophageal septum. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl esophagotracheal septum formation|tracheoesophageal ridges formation tb 2016-07-21T18:18:57Z biological_process owl:Class GO:1905572 biolink:NamedThing ganglioside GM1 transport to membrane The directed movement of ganglioside GM1 to membrane. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T10:50:44Z biological_process owl:Class GO:0048692 biolink:NamedThing negative regulation of axon extension involved in regeneration Any process that stops, prevents, or reduces the frequency, rate or extent of axon extension involved in regeneration. tmpzr1t_l9r_go_relaxed.owl downregulation of axon extension involved in regeneration|inhibition of axon extension involved in regeneration|down-regulation of axon extension involved in regeneration|down regulation of axon extension involved in regeneration biological_process owl:Class GO:0071213 biolink:NamedThing cellular response to 1-aminocyclopropane-1-carboxylic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T12:10:11Z biological_process owl:Class GO:0044620 biolink:NamedThing ACP phosphopantetheine attachment site binding Binding to the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP). tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T03:25:04Z molecular_function owl:Class GO:0086066 biolink:NamedThing atrial cardiac muscle cell to AV node cell communication The process that mediates interactions between an atrial cardiomyocyte and its surroundings that contributes to the process of the atrial cardiomyocyte communicating with an AV node cell in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte to atrioventricular node cell communication|atrial cardiomyocyte to AV node cell communication dph 2011-11-22T09:05:09Z biological_process owl:Class GO:0003743 biolink:NamedThing translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-72722|Reactome:R-HSA-72697|Reactome:R-HSA-72621 GO:0003745|GO:0003744 molecular_function owl:Class GO:0071507 biolink:NamedThing pheromone response MAPK cascade A MAPK cascade that is part of a pheromone response ending in conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl Fus3 signaling cascade|conjugation with cellular fusion, MAPKKK cascade|pheromone MAPK module|MAPKKK cascade involved in mating response|MAPKKK cascade involved in conjugation with cellular fusion|MAPK cascade involved in conjugation with cellular fusion|MAPK signaling in response to pheromone mah 2010-01-05T01:43:47Z biological_process owl:Class GO:0006638 biolink:NamedThing neutral lipid metabolic process The chemical reactions and pathways involving neutral lipids, lipids only soluble in solvents of very low polarity. tmpzr1t_l9r_go_relaxed.owl neutral lipid metabolism biological_process owl:Class GO:0051267 biolink:NamedThing CP2 mannose-ethanolamine phosphotransferase activity Catalysis of the reaction: ethanolamine phosphate + Man-alpha-(1,2)-Man-alpha-(1,2)-Man-alpha-(1,6)-R = Man-alpha-(1,2)-Man-alpha-6-P-EtN-(1,2)-Man-alpha-(1,6)-R; R is Man-alpha(1,4)-GlcNH2-inositol-PO4-lipid. This reaction is the transfer of ethanolamine phosphate to C6 of second mannose in the GPI lipid precursor CP2. tmpzr1t_l9r_go_relaxed.owl CP2 EtN-P transferase activity|CP2 ethanolamine phosphate transferase activity|gpi7 activity|addition of ethanolamine phosphate to mannose of GPI precursor CP2|CP2 phosphoethanolamine transferase activity molecular_function owl:Class GO:0051377 biolink:NamedThing mannose-ethanolamine phosphotransferase activity Catalysis of the transfer of ethanolamine phosphate to a mannose residue in the GPI lipid precursor. tmpzr1t_l9r_go_relaxed.owl ethanolamine phosphate transferase activity|phosphoethanolamine transferase activity|addition of ethanolamine phosphate to mannose of GPI precursor|EtN-P transferase activity Reactome:R-HSA-162798 molecular_function owl:Class GO:0032017 biolink:NamedThing positive regulation of Ran protein signal transduction Any process that activates or increases the frequency, rate or extent of Ran protein signal transduction. tmpzr1t_l9r_go_relaxed.owl activation of Ran protein signal transduction|upregulation of Ran protein signal transduction|up-regulation of Ran protein signal transduction|up regulation of Ran protein signal transduction|stimulation of Ran protein signal transduction biological_process owl:Class GO:0043159 biolink:NamedThing acrosomal matrix A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120281 biolink:NamedThing autolysosome membrane A lipid bilayer that surrounds an autolysosome, a single-membrane-bounded vesicle in which endogenous cellular material is degraded. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20239 krc 2020-11-17T02:46:19Z cellular_component owl:Class GO:0000421 biolink:NamedThing autophagosome membrane The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole membrane cellular_component owl:Class GO:1902038 biolink:NamedThing positive regulation of hematopoietic stem cell differentiation Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of hemopoietic stem cell differentiation|positive regulation of hemopoietic stem cell differentiation|upregulation of haematopoietic stem cell differentiation|activation of haematopoietic stem cell differentiation|up regulation of hemopoietic stem cell differentiation|upregulation of haemopoietic stem cell differentiation|up-regulation of haematopoietic stem cell differentiation|up-regulation of hemopoietic stem cell differentiation|up-regulation of haemopoietic stem cell differentiation|up regulation of haemopoietic stem cell differentiation|up regulation of hematopoietic stem cell differentiation|positive regulation of haematopoietic stem cell differentiation|up-regulation of hematopoietic stem cell differentiation|activation of hemopoietic stem cell differentiation|activation of hematopoietic stem cell differentiation|activation of haemopoietic stem cell differentiation|up regulation of haematopoietic stem cell differentiation|positive regulation of haemopoietic stem cell differentiation|upregulation of hematopoietic stem cell differentiation ss 2013-04-02T05:19:19Z biological_process owl:Class GO:1990776 biolink:NamedThing response to angiotensin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an angiotensin stimulus. Angiotensin is any of three physiologically active peptides (angiotensin II, III, or IV) processed from angiotensinogen. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-16T17:41:17Z biological_process owl:Class GO:0032224 biolink:NamedThing positive regulation of synaptic transmission, cholinergic Any process that activates, maintains or increases the frequency, rate or extent of cholinergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl activation of synaptic transmission, cholinergic|stimulation of synaptic transmission, cholinergic|up regulation of synaptic transmission, cholinergic|up-regulation of synaptic transmission, cholinergic|upregulation of synaptic transmission, cholinergic biological_process owl:Class GO:0000172 biolink:NamedThing ribonuclease MRP complex A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family, and cleaves the rRNA precursor as part of rRNA transcript processing. It also has other roles: In S. cerevisiae it is involved in cell cycle-regulated degradation of daughter cell-specific mRNAs, while in mammalian cells it also enters the mitochondria and processes RNAs to create RNA primers for DNA replication. tmpzr1t_l9r_go_relaxed.owl RNase MRP complex|ribonuclease mitochondrial RNA processing complex cellular_component owl:Class GO:0042699 biolink:NamedThing follicle-stimulating hormone signaling pathway The series of molecular signals mediated by follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl follicle stimulating hormone signaling pathway|follicle-stimulating hormone signalling pathway|follicle stimulating hormone signalling pathway biological_process owl:Class GO:2001148 biolink:NamedThing regulation of dipeptide transmembrane transport Any process that modulates the frequency, rate or extent of dipeptide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of dipeptide membrane transport kmv 2011-10-21T04:34:20Z biological_process owl:Class GO:0004028 biolink:NamedThing 3-chloroallyl aldehyde dehydrogenase activity Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0432|Reactome:R-HSA-71260 molecular_function owl:Class GO:1900494 biolink:NamedThing regulation of butyryl-CoA biosynthetic process from acetyl-CoA Any process that modulates the frequency, rate or extent of butyryl-CoA biosynthetic process from acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl regulation of butyryl-CoA biosynthesis from acetyl-CoA tt 2012-05-02T03:51:38Z biological_process owl:Class GO:0050812 biolink:NamedThing regulation of acyl-CoA biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acyl-CoA. tmpzr1t_l9r_go_relaxed.owl regulation of acyl-CoA anabolism|regulation of acyl-CoA synthesis|regulation of acyl-CoA biosynthesis|regulation of acyl-CoA formation biological_process owl:Class GO:0031433 biolink:NamedThing telethonin binding Binding to telethonin, a protein found in the Z disc of striated muscle and which is a substrate of the titin kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001825 biolink:NamedThing blastocyst formation The initial formation of a blastocyst from a solid ball of cells known as a morula. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology term 'TS3, compacted morula ; EMAP:9'. biological_process owl:Class GO:0097250 biolink:NamedThing mitochondrial respirasome assembly The aggregation, arrangement and bonding together of a set of respiratory enzyme complexes of the mitochondrial inner membrane (including, for example, complex II, complex III, complex IV) to form a large supercomplex. tmpzr1t_l9r_go_relaxed.owl mitochondrial respiratory chain supercomplex assembly|mitochondrial respiratory supercomplex assembly https://github.com/geneontology/go-ontology/issues/12846 pr 2012-02-23T05:18:41Z biological_process owl:Class GO:0007005 biolink:NamedThing mitochondrion organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. tmpzr1t_l9r_go_relaxed.owl mitochondrion organisation|mitochondrion organization and biogenesis|mitochondria organization biological_process owl:Class GO:0005149 biolink:NamedThing interleukin-1 receptor binding Binding to an interleukin-1 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-1 receptor ligand|IL-1 molecular_function owl:Class GO:0008911 biolink:NamedThing lactaldehyde dehydrogenase activity Catalysis of the reaction: (S)-lactaldehyde + NAD+ + H2O = (S)-lactate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl L-lactaldehyde:NAD oxidoreductase activity|(S)-lactaldehyde:NAD+ oxidoreductase activity|nicotinamide adenine dinucleotide (NAD)-linked dehydrogenase activity MetaCyc:LACTALDDEHYDROG-RXN|EC:1.2.1.22|RHEA:14277 molecular_function owl:Class GO:1990863 biolink:NamedThing acinar cell proliferation The multiplication or reproduction of acinar cells, resulting in the expansion of a cell population. An acinar cell is a secretory cell that is grouped together with other cells of the same type to form grape-shaped clusters known as acini (singular acinus). tmpzr1t_l9r_go_relaxed.owl acinic cell proliferation|acinous cell proliferation sl 2015-09-25T14:26:09Z biological_process owl:Class GO:0075043 biolink:NamedThing melanization of appressorium wall The process in which melanin is produced in the appressorium of the symbiont. Melanization of the appressorium increases turgor pressure in the appressorium. tmpzr1t_l9r_go_relaxed.owl melanization of appressorium to maintain turgor pressure|maintenance of turgor in appressorium by melanization https://github.com/geneontology/go-ontology/issues/21505 biological_process owl:Class GO:0035130 biolink:NamedThing post-embryonic pectoral fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the pectoral fin are generated and organized. Pectoral fins are bilaterally paired fins mounted laterally and located behind the gill covers of fish. These fins are used for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035138 biolink:NamedThing pectoral fin morphogenesis The process in which the anatomical structures of the pectoral fin are generated and organized. Pectoral fins are bilaterally paired fins mounted laterally and located behind the gill covers of fish. These fins are used for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000415 biolink:NamedThing negative regulation of histone H3-K36 methylation Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3. tmpzr1t_l9r_go_relaxed.owl down regulation of histone H3-K36 methylation|downregulation of histone H3-K36 methylation|down-regulation of histone H3-K36 methylation|inhibition of histone H3-K36 methylation biological_process owl:Class GO:0031061 biolink:NamedThing negative regulation of histone methylation Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of methyl groups to histones. tmpzr1t_l9r_go_relaxed.owl inhibition of histone methylation|downregulation of histone methylation|down-regulation of histone methylation|down regulation of histone methylation biological_process owl:Class GO:0070832 biolink:NamedThing phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-choline The phosphatidylcholine biosynthetic process that begins with three consecutive N-methylation steps that are carried out on phospho-bases, phosphoethanolamine, phospho-N-methylethanolamine, and phospho-N-dimethylethanolamine; the process ends with the conversion of a phosphatidyl-N-dimethylethanolamine to a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY4FS-2 mah 2009-07-29T03:49:14Z biological_process owl:Class GO:0006656 biolink:NamedThing phosphatidylcholine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine biosynthesis|phosphatidylcholine anabolism|phosphatidylcholine synthesis|phosphatidylcholine formation biological_process owl:Class GO:0015205 biolink:NamedThing nucleobase transmembrane transporter activity Enables the transfer of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acidfrom one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl GO:0015392 molecular_function owl:Class GO:1901076 biolink:NamedThing positive regulation of engulfment of apoptotic cell Any process that activates or increases the frequency, rate or extent of engulfment of apoptotic cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of engulfment of cell corpse|upregulation of engulfment of apoptotic cell|up-regulation of engulfment of apoptotic cell|up regulation of engulfment of apoptotic cell|positive regulation of engulfment of apoptotic cell corpse|upregulation of engulfment of cell corpse|up-regulation of engulfment of cell corpse|up-regulation of engulfment of apoptotic cell corpse|activation of engulfment of apoptotic cell|upregulation of engulfment of apoptotic cell corpse|activation of engulfment of cell corpse|activation of engulfment of apoptotic cell corpse|up regulation of engulfment of cell corpse|up regulation of engulfment of apoptotic cell corpse kmv 2012-07-02T07:32:51Z biological_process owl:Class GO:2000427 biolink:NamedThing positive regulation of apoptotic cell clearance Any process that activates or increases the frequency, rate or extent of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl positive regulation of programmed cell clearance|positive regulation of apoptotic cell removal|positive regulation of efferocytosis bf 2011-02-25T11:50:59Z biological_process owl:Class GO:0044324 biolink:NamedThing regulation of transcription involved in anterior/posterior axis specification Any process that modulates the frequency, rate or extent of transcription that contributes to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-04T12:35:41Z biological_process owl:Class GO:0031229 biolink:NamedThing intrinsic component of nuclear inner membrane The component of the nuclear inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to nuclear inner membrane cellular_component owl:Class GO:0102952 biolink:NamedThing UDP-glucose:coniferaldehyde 4-beta-D-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + coniferyl aldehyde = H+ + coniferaldehyde glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-91|RHEA:57708 molecular_function owl:Class GO:0036029 biolink:NamedThing protein C inhibitor-KLK3 complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and prostate-specific antigen (KLK3); formation of the complex inhibits the serine protease activity of prostate-specific antigen. tmpzr1t_l9r_go_relaxed.owl serpin A5-KLK3 complex|SERPINA5-KLK3 complex|protein C inhibitor-prostate-specific antigen complex|plasma serine protease inhibitor-KLK3 complex|protein C inhibitor-kallikrein-3 complex|PCI-KLK3 complex bf 2011-10-19T02:01:33Z cellular_component owl:Class GO:0015173 biolink:NamedThing aromatic amino acid transmembrane transporter activity Enables the transfer of aromatic amino acids from one side of a membrane to the other. Aromatic amino acids have an aromatic ring. tmpzr1t_l9r_go_relaxed.owl aromatic amino acid transporter activity|hydroxy/aromatic amino acid permease activity|valine/tyrosine/tryptophan permease activity molecular_function owl:Class GO:0051502 biolink:NamedThing diterpene phytoalexin biosynthetic process The chemical reactions and pathways resulting in the formation of diterpene phytoalexins, terpenoids with 20 carbons produced by plants in response to environmental stresses. tmpzr1t_l9r_go_relaxed.owl diterpene phytoalexin biosynthesis|diterpene phytoalexin anabolism|diterpene phytoalexin formation|diterpene phytoalexin synthesis biological_process owl:Class GO:0097687 biolink:NamedThing dinoflagellate antapical horn A horn-shaped dinoflagellate antapex found in thecate species. tmpzr1t_l9r_go_relaxed.owl pr 2014-12-18T09:39:57Z cellular_component owl:Class GO:0030704 biolink:NamedThing vitelline membrane formation Construction of the vitelline membrane portion of the egg shell, a rigid structure required to maintain the shape of the egg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0085029 biolink:NamedThing extracellular matrix assembly The aggregation, arrangement and bonding together of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl jl 2010-07-14T12:52:49Z biological_process owl:Class GO:0004414 biolink:NamedThing homoserine O-acetyltransferase activity Catalysis of the reaction: L-homoserine + acetyl-CoA = O-acetyl-L-homoserine + CoA. tmpzr1t_l9r_go_relaxed.owl homoserine O-trans-acetylase activity|homoserine acetyltransferase activity|homoserine transacetylase activity|L-homoserine O-acetyltransferase activity|homoserine-O-transacetylase activity|acetyl-CoA:L-homoserine O-acetyltransferase activity MetaCyc:HOMOSERINE-O-ACETYLTRANSFERASE-RXN|EC:2.3.1.31|RHEA:13701|KEGG_REACTION:R01776 molecular_function owl:Class GO:0061863 biolink:NamedThing microtubule plus end polymerase Catalysis of the transfer of tubulin dimers to the plus end of a microtubule. The reaction is reversable depending on the availability of dimers. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-07T17:36:57Z molecular_function owl:Class GO:0072097 biolink:NamedThing negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor resulting in the reduction of the frequency, rate or extent of branch elongation involved in ureteric bud branching, the growth of a branch of the ureteric bud along its axis. tmpzr1t_l9r_go_relaxed.owl negative regulation of branch elongation involved in ureteric bud branching by BMP signalling pathway mah 2010-02-10T02:00:34Z biological_process owl:Class GO:0018096 biolink:NamedThing peptide cross-linking via S-(2-aminovinyl)-D-cysteine The synthesis of (S,Z)-S-(2-aminovinyl)cysteine forming an intra-polypeptide cross-link between serine and cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0204 biological_process owl:Class GO:1900985 biolink:NamedThing vindoline biosynthetic process The chemical reactions and pathways resulting in the formation of vindoline. tmpzr1t_l9r_go_relaxed.owl vindoline anabolism|vindoline synthesis|vindoline formation|vindoline biosynthesis yaf 2012-06-14T09:17:03Z biological_process owl:Class GO:0032091 biolink:NamedThing negative regulation of protein binding Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. tmpzr1t_l9r_go_relaxed.owl down regulation of protein binding|downregulation of protein binding|down-regulation of protein binding|inhibition of protein binding biological_process owl:Class GO:0052761 biolink:NamedThing exo-1,4-beta-D-glucosaminidase activity Catalysis of the reaction: [beta-(1->4)-D-glucosamine]n-[N-acetyl-D-glucosamine]m = D-glucosamine + [beta-(1->4)-D-glucosamine](n-1)-[N-acetyl-D-glucosamine]m. This reaction is the hydrolysis of chitosan or chitosan oligosaccharides to remove a D-glucosamine residue from the non-reducing termini; chitosan is a linear polysaccharide composed of randomly distributed beta-(1->4)-linked D-glucosamine and N-acetyl-D-glucosamine units. tmpzr1t_l9r_go_relaxed.owl chitosan glucosaminohydrolase activity|chitosan exo-1,4-beta-D-glucosaminidase activity|exo-beta-D-glucosaminidase activity|exochitosanase activity MetaCyc:3.2.1.165-RXN|KEGG_REACTION:R08715|EC:3.2.1.165 ai 2011-09-28T03:30:54Z molecular_function owl:Class GO:1904109 biolink:NamedThing positive regulation of cholesterol import Any process that activates or increases the frequency, rate or extent of cholesterol import. tmpzr1t_l9r_go_relaxed.owl up-regulation of cholesterol import|activation of cholesterol uptake|up regulation of cholesterol import|upregulation of cholesterol uptake|up regulation of cholesterol uptake|activation of cholesterol import|upregulation of cholesterol import|positive regulation of cholesterol uptake|up-regulation of cholesterol uptake sl 2015-04-03T14:39:06Z biological_process owl:Class GO:0045116 biolink:NamedThing protein neddylation Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein. tmpzr1t_l9r_go_relaxed.owl RUB1-protein conjugation Note that currently, the only known substrates of neddylation are cullin family proteins. GO:0019943 biological_process owl:Class GO:1904723 biolink:NamedThing negative regulation of Wnt-Frizzled-LRP5/6 complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of Wnt-Frizzled-LRP5/6 complex assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of WNT-FZD-LRP6 complex assembly|negative regulation of WNT-FZD-LRP6 complex assembly|negative regulation of Frizzled-LRP5/6 complex assembly|down regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|down-regulation of WNT-FZD-LRP6 complex formation|down regulation of WNT-FZD-LRP6 complex formation|negative regulation of WNT-FZD-LRP5 complex assembly|inhibition of WNT-FZD-LRP5 complex formation|down-regulation of WNT-FZD-LRP5 complex formation|downregulation of Frizzled-LRP5/6 complex assembly|down regulation of WNT-FZD-LRP5 complex formation|downregulation of Wnt-FZD-LRP5/6 trimeric complex assembly|inhibition of WNT-FZD-LRP6 complex assembly|downregulation of Wnt-induced Frizzled-LRP5/6 complex formation|down regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|down-regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|downregulation of WNT-FZD-LRP6 complex formation|negative regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|negative regulation of WNT-FZD-LRP6 complex formation|downregulation of Wnt-FZD-LRP5/6 trimeric complex formation|downregulation of WNT-FZD-LRP6 complex assembly|downregulation of WNT-FZD-LRP5 complex assembly|down-regulation of Wnt-induced Frizzled-LRP5/6 complex formation|down-regulation of Wnt-induced Frizzled-LRP5/6 complex assembly|inhibition of WNT-FZD-LRP6 complex formation|inhibition of Frizzled-LRP5/6 complex assembly|inhibition of Wnt-FZD-LRP5/6 trimeric complex formation|down regulation of WNT-FZD-LRP6 complex assembly|down regulation of Frizzled-LRP5/6 complex formation|down regulation of WNT-FZD-LRP5 complex assembly|down regulation of Frizzled-LRP5/6 complex assembly|down-regulation of Wnt-FZD-LRP5/6 trimeric complex formation|down-regulation of Frizzled-LRP5/6 complex assembly|negative regulation of Wnt-induced Frizzled-LRP5/6 complex formation|down-regulation of Frizzled-LRP5/6 complex formation|downregulation of WNT-FZD-LRP5 complex formation|negative regulation of Frizzled-LRP5/6 complex formation|inhibition of WNT-FZD-LRP5 complex assembly|negative regulation of Wnt-FZD-LRP5/6 trimeric complex assembly|down-regulation of WNT-FZD-LRP5 complex assembly|downregulation of Frizzled-LRP5/6 complex formation|down regulation of Wnt-FZD-LRP5/6 trimeric complex formation|negative regulation of Wnt-FZD-LRP5/6 trimeric complex formation|down regulation of Wnt-induced Frizzled-LRP5/6 complex formation|inhibition of Wnt-FZD-LRP5/6 trimeric complex assembly|inhibition of Wnt-induced Frizzled-LRP5/6 complex assembly|downregulation of Wnt-induced Frizzled-LRP5/6 complex assembly|negative regulation of WNT-FZD-LRP5 complex formation|inhibition of Frizzled-LRP5/6 complex formation|inhibition of Wnt-induced Frizzled-LRP5/6 complex formation bf 2015-10-12T08:14:59Z biological_process owl:Class GO:0008986 biolink:NamedThing pyruvate, water dikinase activity Catalysis of the reaction: ATP + H(2)O + pyruvate = AMP + 3 H(+) + phosphate + phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate synthase activity|phosphoenolpyruvic synthase activity|phosphopyruvate synthetase activity|phoephoenolpyruvate synthetase activity|pyruvate,water dikinase activity|PEP synthetase activity|pyruvate-water dikinase (phosphorylating)|PEP synthase activity|ATP:pyruvate, water phosphotransferase activity|water pyruvate dikinase activity KEGG_REACTION:R00199|EC:2.7.9.2|RHEA:11364|MetaCyc:PEPSYNTH-RXN molecular_function owl:Class GO:0070718 biolink:NamedThing alphaPDGFR-SHP-2 complex A protein complex that contains the platelet-derived growth factor alpha receptor (alphaPDGFR; PDGFRA) and the adaptor protein SHP-2, and is involved signaling via the PDGFR signaling pathway. tmpzr1t_l9r_go_relaxed.owl PDGFRA-SHP-2 complex, PDGF stimulated mah 2009-06-10T05:00:43Z cellular_component owl:Class GO:0031523 biolink:NamedThing Myb complex A multisubunit complex consisting of Myb and other proteins that regulates site specific DNA replication, gene amplification and transcriptional repression. tmpzr1t_l9r_go_relaxed.owl Myeloblastosis proto-oncogene protein complex cellular_component owl:Class GO:1902661 biolink:NamedThing positive regulation of glucose mediated signaling pathway Any process that activates or increases the frequency, rate or extent of glucose mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of glucose mediated signalling|activation of glucose mediated signaling pathway|up-regulation of glucose mediated signaling pathway|upregulation of glucose mediated signalling|up regulation of glucose mediated signaling pathway|upregulation of glucose mediated signaling pathway|up-regulation of glucose mediated signalling|up regulation of glucose mediated signalling|positive regulation of glucose mediated signalling di 2014-01-28T17:54:47Z biological_process owl:Class GO:0072514 biolink:NamedThing trehalose transport in response to water deprivation The directed movement of trehalose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore, that occurs as a result of deprivation of water. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-21T11:26:14Z biological_process owl:Class GO:0035560 biolink:NamedThing pheophorbidase activity Catalysis of the reaction: pheophorbide a + H2O = pyropheophorbide a + methanol + CO2. The reaction occurs in two steps; pheophoridase catalyzes the conversion of pheophorbide a to a precursor of pyropheophorbide a, C-13(2)-carboxylpyropheophorbide a, by demethylation, and then the precursor is decarboxylated non-enzymatically to yield pyropheophorbide a. tmpzr1t_l9r_go_relaxed.owl pheophoridase activity|PPD activity|phedase activity RHEA:32483|EC:3.1.1.82 bf 2010-05-14T02:39:58Z molecular_function owl:Class GO:0002821 biolink:NamedThing positive regulation of adaptive immune response Any process that activates or increases the frequency, rate, or extent of an adaptive immune response. tmpzr1t_l9r_go_relaxed.owl activation of adaptive immune response|up-regulation of adaptive immune response|stimulation of adaptive immune response|up regulation of adaptive immune response|upregulation of adaptive immune response biological_process owl:Class GO:0035743 biolink:NamedThing CD4-positive, alpha-beta T cell cytokine production Any process that contributes to cytokine production by a CD4-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2011-03-17T02:21:51Z biological_process owl:Class GO:0062083 biolink:NamedThing HLA-G specific inhibitory MHC class Ib receptor activity Combining with a MHC class Ib molecule of the HLA-G subclass to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-15T15:06:44Z molecular_function owl:Class GO:0062080 biolink:NamedThing inhibitory MHC class Ib receptor activity Combining with a MHC class Ib protein complex to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-15T15:03:44Z molecular_function owl:Class GO:0033431 biolink:NamedThing CGA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CGA codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA Note that in the standard genetic code, CGA codes for arginine. molecular_function owl:Class GO:0046720 biolink:NamedThing citric acid secretion The controlled release of citric acid, 2-hydroxy-1,2,3-propanetricarboxylic acid, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl citrate secretion biological_process owl:Class GO:0061267 biolink:NamedThing mesonephric interstitial fibroblast development The process whose specific outcome is the progression of a mesonephric interstitial fibroblast over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mesonephros interstitial cell development dph 2010-08-30T03:14:31Z biological_process owl:Class GO:2000912 biolink:NamedThing regulation of galactoglucomannan catabolic process Any process that modulates the frequency, rate or extent of galactoglucomannan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of galactoglucomannan catabolism tt 2011-07-29T07:51:31Z biological_process owl:Class GO:0005853 biolink:NamedThing eukaryotic translation elongation factor 1 complex A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035459 biolink:NamedThing vesicle cargo loading The formation of a macromolecular complex between the coat proteins and proteins and/or lipoproteins that are going to be transported by a vesicle. tmpzr1t_l9r_go_relaxed.owl cargo loading into vesicle|cargo selection bf 2010-04-16T01:14:06Z biological_process owl:Class GO:0045838 biolink:NamedThing positive regulation of membrane potential Any process that activates or increases the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl activation of membrane potential|stimulation of membrane potential|elevation of membrane potential|up-regulation of membrane potential|upregulation of membrane potential|up regulation of membrane potential biological_process owl:Class GO:0071439 biolink:NamedThing clathrin complex A protein complex that consists of three clathrin heavy chains and three clathrin light chains, organized into a symmetrical three-legged structure called a triskelion. In clathrin-coated vesicles clathrin is the main component of the coat and forms a polymeric mechanical scaffold on the vesicle surface. tmpzr1t_l9r_go_relaxed.owl clathrin triskelion mah 2009-12-16T03:17:58Z cellular_component owl:Class GO:1990693 biolink:NamedThing intrinsic component of Golgi cis cisterna membrane The component of the Golgi cis cisterna membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic component of cis-Golgi cisterna membrane bhm 2015-03-12T10:24:07Z cellular_component owl:Class GO:0048669 biolink:NamedThing collateral sprouting in absence of injury The process in which outgrowths develop from the axons of intact undamaged neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071745 biolink:NamedThing IgA immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and sometimes complexed with J chain or J chain and secretory component. An IgA immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgA2 antibody|IgA1 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0071129 biolink:NamedThing alphaV-beta3 integrin-LPP3 complex A protein complex that consists of an alphaV-beta3 integrin complex bound to lipid phosphate phosphohydrolase-3. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-PPAP2B complex mah 2009-11-13T02:25:17Z cellular_component owl:Class GO:0031796 biolink:NamedThing type 1 metabotropic GABA receptor binding Binding to a type 1 metabotropic GABA receptor. tmpzr1t_l9r_go_relaxed.owl type 1 metabotropic GABA receptor ligand molecular_function owl:Class GO:0046679 biolink:NamedThing response to streptomycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a streptomycin stimulus. Streptomycin is a commonly used antibiotic in cell culture media which acts only on prokaryotes and blocks transition from initiation complex to chain elongating ribosome. tmpzr1t_l9r_go_relaxed.owl streptomycin susceptibility/resistance biological_process owl:Class GO:0071669 biolink:NamedThing plant-type cell wall organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. tmpzr1t_l9r_go_relaxed.owl plant-type cell wall organization and biogenesis|plant-type cell wall organisation or biogenesis mah 2010-02-15T02:32:10Z biological_process owl:Class GO:0018872 biolink:NamedThing arsonoacetate metabolic process The chemical reactions and pathways involving arsonoacetate, a synthetic, organic compound containing a single arsenic atom. Arsonoacetate and other arsenic containing compounds are used in agricultural applications as animal feed additives, cotton defoliants and post-emergence grass herbicides. tmpzr1t_l9r_go_relaxed.owl arsonoacetate metabolism UM-BBD_pathwayID:ara biological_process owl:Class GO:0047842 biolink:NamedThing dehydro-L-gulonate decarboxylase activity Catalysis of the reaction: 3-dehydro-L-gulonate + H(+) = L-xylulose + CO(2). tmpzr1t_l9r_go_relaxed.owl 3-dehydro-L-gulonate carboxy-lyase activity|3-keto-L-gulonate decarboxylase activity|3-dehydro-L-gulonate carboxy-lyase (L-xylulose-forming)|keto-L-gulonate decarboxylase activity Reactome:R-HSA-5662473|MetaCyc:DEHYDRO-L-GULONATE-DECARBOXYLASE-RXN|RHEA:11084|KEGG_REACTION:R01905|EC:4.1.1.34 molecular_function owl:Class GO:2000927 biolink:NamedThing regulation of cellodextrin catabolic process Any process that modulates the frequency, rate or extent of cellodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellodextrin catabolism tt 2011-08-01T12:41:29Z biological_process owl:Class GO:0007352 biolink:NamedThing zygotic specification of dorsal/ventral axis The specification of the dorsal/ventral axis of the embryo, through the products of genes expressed in the zygote. tmpzr1t_l9r_go_relaxed.owl zygotic determination of dorsal-ventral axis|zygotic determination of dorsoventral axis|zygotic determination of dorsal/ventral axis biological_process owl:Class GO:0009950 biolink:NamedThing dorsal/ventral axis specification The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. tmpzr1t_l9r_go_relaxed.owl dorsal/ventral axis determination|dorsal-ventral axis specification|dorsoventral axis specification biological_process owl:Class GO:1903297 biolink:NamedThing regulation of hypoxia-induced intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of hypoxia-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of hypoxia-induced apoptosis|regulation of intrinsic apoptotic signaling pathway in response to hypoxia|regulation of hypoxic stress-induced intrinsic apoptotic signaling pathway bf 2014-08-14T14:47:48Z biological_process owl:Class GO:0090649 biolink:NamedThing response to oxygen-glucose deprivation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the deprivation of oxygen and glucose. tmpzr1t_l9r_go_relaxed.owl response to OGD tb 2015-07-01T10:27:29Z biological_process owl:Class GO:0036293 biolink:NamedThing response to decreased oxygen levels Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. tmpzr1t_l9r_go_relaxed.owl response to lowered oxygen levels This term should be used when a decrease in oxygen levels is not considered a stress response. For a hypoxic stress response, consider instead 'response to hypoxia ; GO:0001666'. bf 2012-07-20T01:05:46Z biological_process owl:Class GO:1903384 biolink:NamedThing negative regulation of hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of a hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of neuron apoptosis in response to hydrogen peroxide|down-regulation of neuron intrinsic apoptotic signaling pathway in response to H2O2|down regulation of H2O2-induced neuron intrinsic apoptotic signaling pathway|downregulation of H2O2-induced neuron intrinsic apoptotic signaling pathway|inhibition of H2O2-induced neuron intrinsic apoptotic signaling pathway|negative regulation of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|inhibition of neuron intrinsic apoptotic signaling pathway in response to H2O2|protection against hydrogen peroxide-induced neuron apoptosis|inhibition of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down regulation of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down regulation of neuron intrinsic apoptotic signaling pathway in response to H2O2|down-regulation of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|downregulation of neuron intrinsic apoptotic signaling pathway in response to H2O2|inhibition of neuron apoptosis in response to hydrogen peroxide|downregulation of neuron apoptosis in response to hydrogen peroxide|negative regulation of neuron intrinsic apoptotic signaling pathway in response to H2O2|negative regulation of H2O2-induced neuron intrinsic apoptotic signaling pathway|down regulation of neuron apoptosis in response to hydrogen peroxide|down-regulation of neuron apoptosis in response to hydrogen peroxide|protection against H2O2-induced neuron apoptosis|downregulation of neuron intrinsic apoptotic signaling pathway in response to hydrogen peroxide|down-regulation of H2O2-induced neuron intrinsic apoptotic signaling pathway bf 2014-08-27T08:50:45Z biological_process owl:Class GO:0009252 biolink:NamedThing peptidoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl peptidoglycan synthesis|murein biosynthesis|peptidoglycan biosynthesis|peptidoglycan anabolism|murein biosynthetic process|peptidoglycan formation GO:0009285 biological_process owl:Class GO:1990772 biolink:NamedThing substance P secretion The regulated release of substance P, a peptide hormone that is involved in neurotransmission, inflammation, and antimicrobial activity. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-15T18:17:30Z biological_process owl:Class GO:1905460 biolink:NamedThing negative regulation of vascular associated smooth muscle cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of vascular associated smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular smooth muscle cell apoptotic process|down-regulation of VSMC apoptotic process|inhibition of vascular smooth muscle cell apoptosis|downregulation of VSMC apoptotic process|down-regulation of vascular smooth muscle cell apoptosis|downregulation of vascular associated smooth muscle cell apoptotic process|inhibition of vascular associated smooth muscle cell apoptotic process|down regulation of vascular associated smooth muscle cell apoptosis|down regulation of VSMC apoptosis|inhibition of VSMC apoptotic process|negative regulation of vascular smooth muscle cell apoptosis|down-regulation of vascular smooth muscle cell apoptotic process|negative regulation of VSMC apoptosis|down regulation of VSMC apoptotic process|downregulation of vascular smooth muscle cell apoptotic process|down-regulation of vascular associated smooth muscle cell apoptotic process|down regulation of vascular smooth muscle cell apoptosis|down regulation of vascular associated smooth muscle cell apoptotic process|down-regulation of vascular associated smooth muscle cell apoptosis|negative regulation of VSMC apoptotic process|inhibition of VSMC apoptosis|downregulation of vascular associated smooth muscle cell apoptosis|negative regulation of vascular associated smooth muscle cell apoptosis|downregulation of vascular smooth muscle cell apoptosis|down-regulation of VSMC apoptosis|down regulation of vascular smooth muscle cell apoptotic process|inhibition of vascular associated smooth muscle cell apoptosis|inhibition of vascular smooth muscle cell apoptotic process|downregulation of VSMC apoptosis rph 2016-09-19T11:34:03Z biological_process owl:Class GO:0009714 biolink:NamedThing chalcone metabolic process The chemical reactions and pathways involving chalcones, phenyl steryl ketone or its hydroxylated derivatives. tmpzr1t_l9r_go_relaxed.owl chalcone metabolism biological_process owl:Class GO:0033548 biolink:NamedThing myo-inositol hexakisphosphate biosynthetic process, lipid-independent The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, by the successively phosphorylation of myo-inositol or an inositol trisphosphate; the inositol trisphosphates that may be used by this pathway are inositol 3,4,5-trisphosphate and inositol 3,4,6trisphosphate. tmpzr1t_l9r_go_relaxed.owl myo-inositol hexakisphosphate biosynthesis, lipid-independent|phytate biosynthetic process, lipid-independent|myo-inositol hexakisphosphate synthesis, lipid-independent|myo-inositol hexakisphosphate formation, lipid-independent|myo-inositol hexakisphosphate anabolism, lipid-independent|phytate biosynthesis, lipid-independent MetaCyc:PWY-4661 biological_process owl:Class GO:0010264 biolink:NamedThing myo-inositol hexakisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. tmpzr1t_l9r_go_relaxed.owl myo-inositol hexakisphosphate anabolism|phytate biosynthetic process|myo-inositol hexakisphosphate synthesis|myo-inositol hexakisphosphate formation|phytate biosynthesis|myo-inositol hexakisphosphate biosynthesis biological_process owl:Class GO:1902746 biolink:NamedThing regulation of lens fiber cell differentiation Any process that modulates the frequency, rate or extent of lens fiber cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of lens fibre cell differentiation mr 2014-03-03T23:18:50Z biological_process owl:Class GO:0002547 biolink:NamedThing positive regulation of tissue kallikrein-kinin cascade Any process that activates or increases the frequency, rate, or extent of the tissue kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of glandular kallikrein-kinin cascade|stimulation of tissue kallikrein-kinin cascade|activation of tissue kallikrein-kinin cascade|upregulation of tissue kallikrein-kinin cascade|up regulation of tissue kallikrein-kinin cascade|up-regulation of tissue kallikrein-kinin cascade biological_process owl:Class GO:0075042 biolink:NamedThing negative regulation of establishment of turgor in appressorium Any process that stops, prevents, or reduces the frequency, rate or extent of turgor formation in the symbiont appressorium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043307 biolink:NamedThing eosinophil activation The change in morphology and behavior of a eosinophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001316 biolink:NamedThing kojic acid metabolic process The chemical reactions and pathways involving kojic acid. tmpzr1t_l9r_go_relaxed.owl 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one metabolism|C6H6O4 metabolism|kojic acid metabolism|5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one metabolic process|C6H6O4 metabolic process bf 2012-04-18T09:22:42Z biological_process owl:Class GO:0004767 biolink:NamedThing sphingomyelin phosphodiesterase activity Catalysis of the reaction: H(2)O + sphingomyelin = ceramide + choline phosphate + H(+). tmpzr1t_l9r_go_relaxed.owl sphingomyelin cholinephosphohydrolase activity|sphingomyelinase activity MetaCyc:SPHINGOMYELIN-PHOSPHODIESTERASE-RXN|Reactome:R-HSA-1605797|Reactome:R-HSA-1606273|Reactome:R-HSA-1640164|Reactome:R-HSA-1606288|EC:3.1.4.12|KEGG_REACTION:R02541|Reactome:R-HSA-193706|RHEA:19253 GO:0030231|GO:0030230 molecular_function owl:Class GO:2000619 biolink:NamedThing negative regulation of histone H4-K16 acetylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H4-K16 acetylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of histone H4 acetylation at K16 vk 2011-04-18T03:19:27Z biological_process owl:Class GO:0034604 biolink:NamedThing pyruvate dehydrogenase (NAD+) activity Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:28042|MetaCyc:PYRUVDEH-RXN|KEGG_REACTION:R00209 molecular_function owl:Class GO:0030291 biolink:NamedThing protein serine/threonine kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901245 biolink:NamedThing positive regulation of toll-like receptor 9 signaling pathway by B cell receptor internalization The movement of a B cell receptor (BCR) from the plasma membrane to the inside of the cell, which results in positive regulation of toll-like receptor 9 (TLR9) signaling. For example, internalized BCR signals to recruit TLR9 from multiple small endosomes to large autophagosome-like compartments to enhance TLR9 signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 9 signaling pathway by BCR endocytosis|positive regulation of TLR9 signaling pathway by B cell receptor internalization|positive regulation of toll-like receptor 9 signalling pathway by BCR endocytosis|positive regulation of toll-like receptor 9 signalling pathway by BCR receptor internalization|positive regulation of TLR9 signaling pathway by BCR endocytosis|positive regulation of TLR9 signaling pathway by BCR receptor internalization|BCR-induced TLR9 recruitment|positive regulation of toll-like receptor 9 signaling pathway by BCR receptor internalization|positive regulation of toll-like receptor 9 signalling pathway by B cell receptor internalization bf 2012-08-08T08:12:44Z biological_process owl:Class GO:0036300 biolink:NamedThing B cell receptor internalization A receptor-mediated endocytosis process that results in the movement of a B cell receptor from the plasma membrane to the inside of the cell. tmpzr1t_l9r_go_relaxed.owl B cell receptor uptake of antigen|BCR endocytosis|BCR receptor internalization bf 2012-08-07T11:24:20Z biological_process owl:Class GO:1900134 biolink:NamedThing negative regulation of renin secretion into blood stream Any process that stops, prevents or reduces the frequency, rate or extent of renin secretion into blood stream. tmpzr1t_l9r_go_relaxed.owl down regulation of renin release into blood stream|down regulation of renin secretion into blood stream|inhibition of renin secretion into blood stream|downregulation of renin release into blood stream|inhibition of renin release into blood stream|negative regulation of renin release into blood stream|down-regulation of renin release into blood stream|down-regulation of renin secretion into blood stream|downregulation of renin secretion into blood stream rph 2012-02-27T10:32:05Z biological_process owl:Class GO:0019141 biolink:NamedThing 2-dehydropantolactone reductase (B-specific) activity Catalysis of the reaction: (R)-pantolactone + NADP+ = 2-dehydropantolactone + NADPH + H+. The reaction is B-specific (i.e. the pro-S hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NADP+. tmpzr1t_l9r_go_relaxed.owl (R)-pantolactone:NADP+ oxidoreductase (B-specific)|2-oxopantoyl lactone reductase|2-ketopantoyl lactone reductase activity|2-dehydropantoyl-lactone reductase (B-specific) activity|ketopantoyl lactone reductase activity EC:1.1.1.214|MetaCyc:DEHYDROPANTLACRED-RXN molecular_function owl:Class GO:0050324 biolink:NamedThing taurocyamine kinase activity Catalysis of the reaction: ATP + taurocyamine = N-phosphotaurocyamine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl taurocyamine phosphotransferase activity|ATP:taurocyamine N-phosphotransferase activity|ATP:taurocyamine phosphotransferase activity KEGG_REACTION:R03785|RHEA:22516|MetaCyc:TAUROCYAMINE-KINASE-RXN|EC:2.7.3.4 molecular_function owl:Class GO:0015491 biolink:NamedThing cation:cation antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cation A(out) + cation B(in) = cation A(in) + cation B(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0110081 biolink:NamedThing negative regulation of placenta blood vessel development Any process that stops, prevents or reduces the frequency, rate or extent of placenta blood vessel development. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T15:01:11Z biological_process owl:Class GO:1902502 biolink:NamedThing multivesicular body HOPS complex Any HOPS complex that is part of a multivesicular body membrane. tmpzr1t_l9r_go_relaxed.owl multivesicular body membrane HOPS complex tb 2013-11-14T00:10:08Z cellular_component owl:Class GO:0030897 biolink:NamedThing HOPS complex A multimeric protein complex that associates with the vacuolar membrane, late endosomal (multivesicular body) and lysosomal membranes. HOPS is a tethering complex involved in vesicle fusion. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021531 biolink:NamedThing spinal cord radial glial cell differentiation The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of radial glial cells. Radial cell precursors differentiate into both neuronal cell types and mature radial glial cells. Mature radial glial cells regulate the axon growth and pathfinding processes that occur during white matter patterning of the developing spinal cord. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl radial glial cell differentiation in spinal cord biological_process owl:Class GO:0060019 biolink:NamedThing radial glial cell differentiation The process in which neuroepithelial cells of the neural tube give rise to radial glial cells, specialized bipotential progenitors cells of the brain. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009259 biolink:NamedThing ribonucleotide metabolic process The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleotide metabolism GO:0009121 biological_process owl:Class GO:0048464 biolink:NamedThing flower calyx development The process whose specific outcome is the progression of the flower calyx over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060677 biolink:NamedThing ureteric bud elongation The developmental growth in which the ureteric bud grows along its axis beginning with the growth of the primary ureteric bud and ending when the branches of the bud have elongated. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T02:13:29Z biological_process owl:Class GO:0006323 biolink:NamedThing DNA packaging Any process in which DNA and associated proteins are formed into a compact, orderly structure. tmpzr1t_l9r_go_relaxed.owl DNA organisation|DNA condensation|DNA organization biological_process owl:Class GO:0071244 biolink:NamedThing cellular response to carbon dioxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:41:21Z biological_process owl:Class GO:0150004 biolink:NamedThing dendritic spine origin The part of the dendritic spine neck where the spine arises from the dendritic shaft. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070855 biolink:NamedThing myosin VI head/neck binding Binding to the head/neck region of a myosin VI heavy chain. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-13T01:45:08Z molecular_function owl:Class GO:0070854 biolink:NamedThing myosin VI heavy chain binding Binding to a heavy chain of a myosin VI complex. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-13T01:44:05Z molecular_function owl:Class GO:0097649 biolink:NamedThing A axonemal microtubule A complete microtubule with 13 protofilaments that fuses with an incomplete microtubule called B tubule (containing 10 protofilaments only) to form an axonemal outer doublet. Inner and outer dynein arms, as well as the radial spoke, are attached to the A tubule. tmpzr1t_l9r_go_relaxed.owl A tubule pr 2014-09-10T20:41:28Z cellular_component owl:Class GO:0038164 biolink:NamedThing thrombopoietin receptor activity Combining with the glycoprotein thrombopoietin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-14T02:46:58Z molecular_function owl:Class GO:0015415 biolink:NamedThing ATPase-coupled phosphate ion transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + phosphate(out) = ADP + phosphate + phosphate(in). tmpzr1t_l9r_go_relaxed.owl phosphate porter activity|phosphate-transporting ATPase activity|ATP phosphohydrolase (phosphate-importing)|phosphate transporting ATPase activity|phosphate ABC transporter|phosphate ion transmembrane-transporting ATPase activity|ABC phosphate transporter activity EC:7.3.2.1|RHEA:24440 molecular_function owl:Class GO:1905246 biolink:NamedThing negative regulation of aspartic-type peptidase activity Any process that stops, prevents or reduces the frequency, rate or extent of aspartic-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of aspartic-type peptidase activity|downregulation of aspartic-type peptidase activity|down regulation of aspartic-type peptidase activity|pepsin inhibitor|down-regulation of aspartic-type peptidase activity jl 2016-06-09T11:55:47Z biological_process owl:Class GO:0070819 biolink:NamedThing menaquinone-dependent protoporphyrinogen oxidase activity Catalysis of the reaction: protoporphyrinogen IX + menaquinone = protoporphyrin IX + reduced menaquinone. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen-IX:menaquinone oxidoreductase activity mah 2009-07-20T02:46:06Z molecular_function owl:Class GO:0050979 biolink:NamedThing magnetoreception by sensory perception of mechanical stimulus The series of events required for an organism to receive a mechanical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. A magnetic field exerts a torque on a ferromagnetic material (e.g. magnetite) or on a material with diamagnetic anisotropy; organisms that can detect this torque can use it to determine the orientation of the magnetic field. tmpzr1t_l9r_go_relaxed.owl magnetoreception, using mechanical stimulus|magnetoreception, sensory perception of mechanical stimulus|magnetoreception through mechanical stimulus biological_process owl:Class GO:0046705 biolink:NamedThing CDP biosynthetic process The chemical reactions and pathways resulting in the formation of CDP, cytidine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl CDP anabolism|CDP formation|CDP biosynthesis|CDP synthesis biological_process owl:Class GO:1903126 biolink:NamedThing negative regulation of centriole-centriole cohesion Any process that stops, prevents or reduces the frequency, rate or extent of centriole-centriole cohesion. tmpzr1t_l9r_go_relaxed.owl inhibition of centriole-centriole cohesion|down regulation of centriole-centriole cohesion|down-regulation of centriole-centriole cohesion|downregulation of centriole-centriole cohesion als 2014-06-24T09:31:45Z biological_process owl:Class GO:0102471 biolink:NamedThing 2-hydroxynaringenin-6C-glucoside dehydratase activity Catalysis of the reaction: 6C-glucosyl-2-hydroxynaringenin <=> isovitexin-7-olate + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14076 molecular_function owl:Class GO:0071162 biolink:NamedThing CMG complex A protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication. tmpzr1t_l9r_go_relaxed.owl unwindosome mah 2009-11-19T11:04:13Z cellular_component owl:Class GO:0031261 biolink:NamedThing DNA replication preinitiation complex A protein-DNA complex assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication. The preinitiation complex is formed by the assembly of additional proteins onto an existing prereplicative complex. In budding yeast, the additional proteins might include Cdc45p, Sld2p, Sld3p, Dpb11p, DNA polymerases, and others; in fission yeast the GINS complex is present. tmpzr1t_l9r_go_relaxed.owl pre-IC cellular_component owl:Class GO:0002516 biolink:NamedThing B cell deletion The apoptotic death of B cells which is part of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte deletion|B-cell deletion|B lymphocyte deletion biological_process owl:Class GO:0044601 biolink:NamedThing protein denucleotidylation The removal of a nucleotide from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-01T04:13:54Z biological_process owl:Class GO:0050109 biolink:NamedThing morphine 6-dehydrogenase activity Catalysis of the reaction: morphine + NAD(P)+ = morphinone + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl reductase, naloxone|naloxone reductase activity|morphine:NAD(P)+ 6-oxidoreductase activity MetaCyc:MORPHINE-6-DEHYDROGENASE-RXN|EC:1.1.1.218 molecular_function owl:Class GO:1902491 biolink:NamedThing negative regulation of sperm capacitation Any process that stops, prevents or reduces the frequency, rate or extent of sperm capacitation. tmpzr1t_l9r_go_relaxed.owl down-regulation of sperm activation|down-regulation of sperm capacitation|inhibition of sperm activation|negative regulation of sperm activation|downregulation of sperm capacitation|down regulation of sperm capacitation|down regulation of sperm activation|downregulation of sperm activation|inhibition of sperm capacitation hjd 2013-11-12T21:17:12Z biological_process owl:Class GO:1901004 biolink:NamedThing ubiquinone-6 metabolic process The chemical reactions and pathways involving ubiquinone-6. Ubiquinone-6 is a ubiquinone compound having a (2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl substituent at position 2. tmpzr1t_l9r_go_relaxed.owl ubiquinone-6 metabolism|coenzyme Q6 metabolism|coenzyme Q6 metabolic process bf 2012-06-15T09:59:28Z biological_process owl:Class GO:0048206 biolink:NamedThing vesicle targeting, cis-Golgi to rough endoplasmic reticulum The process in which vesicles are directed to specific destination membranes during transport from the cis-Golgi to the rough ER. tmpzr1t_l9r_go_relaxed.owl vesicle targeting, cis-Golgi to rough ER|cis-Golgi to rough endoplasmic reticulum targeting|cis-Golgi to rough ER targeting biological_process owl:Class GO:0009959 biolink:NamedThing negative gravitropism The orientation of plant parts away from gravity. tmpzr1t_l9r_go_relaxed.owl shoot gravitropism biological_process owl:Class GO:0001108 biolink:NamedThing bacterial-type RNA polymerase holo enzyme binding Binding to a component of the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase. tmpzr1t_l9r_go_relaxed.owl basal bacterial-type RNA polymerase transcription machinery binding krc 2010-11-30T04:26:04Z molecular_function owl:Class GO:0097171 biolink:NamedThing ADP-L-glycero-beta-D-manno-heptose biosynthetic process The chemical reactions and pathways resulting in the formation of ADP-L-glycero-beta-D-manno-heptose, an ADP-L-glycero-D-manno-heptose having beta-configuration at the anomeric centre of the heptose. ADP-L-glycero-beta-D-manno-heptose (also called ADP-L-beta-D-heptose or ADP-L-glycero-D-manno-heptose) is a nucleotide-sugar precursor of the inner core lipopolysaccharide (LPS) from D-glycero-beta-D-manno-heptose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl ADP-L-glycero-beta-D-manno-heptose biosynthesis|ADP-L-glycero-beta-D-manno-heptose synthesis|ADP-L-glycero-beta-D-manno-heptose anabolism|ADP-L-glycero-beta-D-manno-heptose formation pr 2011-10-03T09:15:03Z biological_process owl:Class GO:0140147 biolink:NamedThing zinc ion export from vacuole The directed movement of zinc ions from inside the vacuole across the vacuolar membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2017-12-13T15:21:10Z biological_process owl:Class GO:1904780 biolink:NamedThing negative regulation of protein localization to centrosome Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to centrosome. tmpzr1t_l9r_go_relaxed.owl downregulation of protein localization to centrosome|downregulation of protein localisation to centrosome|down regulation of protein localisation to centrosome|down regulation of protein localization to centrosome|down-regulation of protein localization to centrosome|negative regulation of protein localisation to centrosome|down-regulation of protein localisation to centrosome|inhibition of protein localisation to centrosome|inhibition of protein localization to centrosome An example is cdk-2 in C. elegans (UniProt ID O61847) in PMID:17115027 (inferred from mutant phenotype). es 2015-10-30T11:54:47Z biological_process owl:Class GO:0009676 biolink:NamedThing low-affinity sulfate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity sulfate:proton symporter activity|low affinity sulphate:hydrogen symporter activity|low affinity sulfate:hydrogen symporter activity molecular_function owl:Class GO:0002805 biolink:NamedThing regulation of antimicrobial peptide biosynthetic process Any process that modulates the frequency, rate, or extent of antimicrobial peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070136 biolink:NamedThing beta-1,2-oligomannoside biosynthetic process The chemical reactions and pathways resulting in the formation of beta-1,2-linked oligomannosides, which are found in fungal cell wall phosphopeptidomannan and phospholipomannan. tmpzr1t_l9r_go_relaxed.owl beta-1,2-oligomannoside synthesis|beta-1,2-oligomannoside formation|beta-1,2-oligomannoside anabolism|beta-1,2-oligomannoside biosynthesis biological_process owl:Class GO:0046354 biolink:NamedThing mannan biosynthetic process The chemical reactions and pathways resulting in the formation of mannan, the main hemicellulose of soft (coniferous) wood, made up of D-mannose, D-glucose and D-galactose. tmpzr1t_l9r_go_relaxed.owl mannan formation|mannan anabolism|mannan synthesis|mannan biosynthesis biological_process owl:Class GO:0052784 biolink:NamedThing reuteran biosynthetic process The chemical reactions and pathways resulting in the formation of reuteran, a soluble glucan polymer with mainly alpha-(1->4) glycosidic linkages and significant amounts of alpha-(1->6) and alpha-(1->4,6) glucosidic linkages. tmpzr1t_l9r_go_relaxed.owl reuteransucrase-mediated reuteran biosynthesis ai 2011-10-04T09:20:35Z biological_process owl:Class GO:1905467 biolink:NamedThing positive regulation of G-quadruplex DNA unwinding Any process that activates or increases the frequency, rate or extent of G-quadruplex DNA unwinding. tmpzr1t_l9r_go_relaxed.owl up-regulation of G-quadruplex DNA unwinding|activation of G-quadruplex DNA unwinding|up regulation of G-quadruplex DNA unwinding|upregulation of G-quadruplex DNA unwinding ans 2016-09-19T12:16:01Z biological_process owl:Class GO:0071985 biolink:NamedThing multivesicular body sorting pathway A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-22T12:04:16Z biological_process owl:Class GO:0051000 biolink:NamedThing positive regulation of nitric-oxide synthase activity Any process that activates or increases the activity of the enzyme nitric-oxide synthase. tmpzr1t_l9r_go_relaxed.owl stimulation of nitric-oxide synthase activity|activation of nitric-oxide synthase activity|nitric-oxide synthase activator|upregulation of nitric-oxide synthase activity|up-regulation of nitric-oxide synthase activity|up regulation of nitric-oxide synthase activity|NOS activator|positive regulation of NOS activity biological_process owl:Class GO:0002209 biolink:NamedThing behavioral defense response A behavioral response seeking to protect an organism from an a perceived external threat to that organism. tmpzr1t_l9r_go_relaxed.owl behavioural defense response biological_process owl:Class GO:0005158 biolink:NamedThing insulin receptor binding Binding to an insulin receptor. tmpzr1t_l9r_go_relaxed.owl insulin receptor ligand molecular_function owl:Class GO:0050683 biolink:NamedThing AF-1 domain binding Binding to an AF-1 protein domain, a ligand-independent transactivation domain which is required for the full transcriptional activity of the receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900932 biolink:NamedThing regulation of nonadec-1-ene metabolic process Any process that modulates the frequency, rate or extent of nonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of nonadec-1-ene metabolism tt 2012-06-14T03:11:28Z biological_process owl:Class GO:0008721 biolink:NamedThing D-serine ammonia-lyase activity Catalysis of the reaction: D-serine = pyruvate + NH3. tmpzr1t_l9r_go_relaxed.owl D-hydroxyaminoacid dehydratase activity|D-serine hydrolase activity|D-serine hydro-lyase (deaminating) activity|D-hydroxy amino acid dehydratase activity|D-serine dehydrase activity|D-serine dehydration activity|D-serine dehydratase (deaminating) activity|D-serine ammonia-lyase (pyruvate-forming)|D-serine dehydratase activity|D-serine deaminase activity Reactome:R-HSA-9014741|Reactome:R-HSA-9034539|RHEA:13977|MetaCyc:DSERDEAM-RXN|EC:4.3.1.18 Note that this function was formerly EC:4.3.1.14. molecular_function owl:Class GO:0043881 biolink:NamedThing mesaconyl-CoA hydratase activity Catalysis of the hydration of mesaconyl-CoA to beta-methylmalyl-CoA. tmpzr1t_l9r_go_relaxed.owl mch|beta-methylmalyl-CoA dehydratase activity|mesaconyl-coenzyme A hydratase activity This function is part of an alternate glyoxylate cycle for acetate assimilation. molecular_function owl:Class GO:0051456 biolink:NamedThing attachment of spindle microtubules to kinetochore involved in meiotic sister chromatid segregation The process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex during meiosis II. During meiosis II sister kinetochores are situated facing opposite spindle poles and bipolar attachment of the sister chromosomes to the spindle occurs. tmpzr1t_l9r_go_relaxed.owl meiotic bipolar attachment|attachment of spindle microtubules to kinetochore involved in meiosis II|attachment of spindle microtubules to kinetochore during meiosis II biological_process owl:Class GO:1990984 biolink:NamedThing tRNA demethylase activity Catalysis of the removal of a methyl group from one or more positions within a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl sp 2016-10-28T08:38:14Z molecular_function owl:Class GO:0016460 biolink:NamedThing myosin II complex A myosin complex containing two class II myosin heavy chains, two myosin essential light chains and two myosin regulatory light chains. Also known as classical myosin or conventional myosin, the myosin II class includes the major muscle myosin of vertebrate and invertebrate muscle, and is characterized by alpha-helical coiled coil tails that self assemble to form a variety of filament structures. tmpzr1t_l9r_go_relaxed.owl conventional myosin cellular_component owl:Class GO:0033229 biolink:NamedThing cysteine transmembrane transporter activity Enables the transfer of cysteine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17289 RHEA:32795 molecular_function owl:Class GO:0030265 biolink:NamedThing phospholipase C-activating rhodopsin mediated signaling pathway The series of molecular signals generated as a consequence of a rhodopsin molecule being activated by a photon, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl rhodopsin mediated G-protein signaling, coupled to IP3 second messenger|rhodopsin mediated G protein signalling, coupled to IP3 second messenger|phospholipase C-activating rhodopsin mediated G-protein coupled receptor signaling pathway|rhodopsin mediated G-protein signalling, coupled to IP3 second messenger|PLC-activating rhodopsin mediated signaling pathway|rhodopsin mediated G protein signaling, coupled to IP3 second messenger biological_process owl:Class GO:0048776 biolink:NamedThing negative regulation of leucophore differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of leucophore differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of leucophore differentiation|down-regulation of leucophore differentiation|down regulation of leucophore differentiation|downregulation of leucophore differentiation biological_process owl:Class GO:0071744 biolink:NamedThing IgE B cell receptor complex An IgE immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl membrane-bound IgE|surface IgE Note that an IgE immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0075328 biolink:NamedThing formation of arbuscule for nutrient acquisition The assembly of an arbuscule, a fine, tree-like hyphal symbiont structure projected into the host cell for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation by symbiont of arbuscule for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0098583 biolink:NamedThing learned vocalization behavior A vocalization behavior that is the result of learning. tmpzr1t_l9r_go_relaxed.owl Examples include human speech and learned bird song. dos 2014-01-24T12:48:57Z biological_process owl:Class GO:0098598 biolink:NamedThing learned vocalization behavior or vocal learning Vocalisation behavior that is the result of learning, or the process by which new vocalizations are learned. tmpzr1t_l9r_go_relaxed.owl This grouping term is necessary because, in the absence of conditional mutations, it is not possible to use phenotypic evidence to distinguish an effect on vocal learning from an effect on learned vocalisation behavior. dos 2014-04-10T11:34:33Z biological_process owl:Class GO:0032187 biolink:NamedThing actomyosin contractile ring localization The process in which a contractile ring is assembled and/or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle. tmpzr1t_l9r_go_relaxed.owl contractile ring localisation involved in cell cycle cytokinesis|contractile ring localization involved in cell cycle cytokinesis biological_process owl:Class GO:0036214 biolink:NamedThing contractile ring localization The process in which a contractile ring is assembled and/or maintained in a specific location. tmpzr1t_l9r_go_relaxed.owl This term can be used to annotate localization of either bacterial or fungal contractile rings. bf 2012-04-26T02:58:50Z biological_process owl:Class GO:0099549 biolink:NamedThing trans-synaptic signaling by carbon monoxide Cell-cell signaling between presynapse and postsynapse mediated by carbon monoxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002041 biolink:NamedThing intussusceptive angiogenesis The formation of new blood vessels as a result of the insertion and extension of lumenal tissue pillars. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900397 biolink:NamedThing regulation of pyrimidine nucleotide biosynthetic process Any process that modulates the frequency, rate or extent of pyrimidine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of pyrimidine nucleotide synthesis|regulation of pyrimidine nucleotide anabolism|regulation of pyrimidine nucleotide formation|regulation of pyrimidine nucleotide biosynthesis jh 2012-04-19T01:05:31Z biological_process owl:Class GO:0043507 biolink:NamedThing positive regulation of JUN kinase activity Any process that activates or increases the frequency, rate or extent of JUN kinase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of JNK activity|up regulation of JNK activity|positive regulation of JUNK activity|up-regulation of JNK activity|stimulation of JNK activity biological_process owl:Class GO:1905937 biolink:NamedThing negative regulation of germ cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of germ cell proliferation|down-regulation of germ cell proliferation|inhibition of germ cell proliferation|down regulation of germ cell proliferation hbye 2017-02-09T14:51:41Z biological_process owl:Class GO:1990470 biolink:NamedThing piRNA cluster binding Binding to piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs). tmpzr1t_l9r_go_relaxed.owl An example of this is rhi in Drosophila melanogaster (Q7JXA8) in PMID:24906153 (inferred from direct assay). bhm 2014-08-29T14:23:38Z molecular_function owl:Class GO:0090053 biolink:NamedThing positive regulation of pericentric heterochromatin assembly Any process that increases the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of chromatin silencing at centromere https://github.com/geneontology/go-ontology/issues/19112 tb 2009-08-07T10:49:40Z biological_process owl:Class GO:0070442 biolink:NamedThing integrin alphaIIb-beta3 complex An integrin complex that comprises one alphaIIb subunit and one beta3 subunit. tmpzr1t_l9r_go_relaxed.owl alphaIIb-beta3 integrin complex|ITGA2B-ITGB3 complex cellular_component owl:Class GO:0072461 biolink:NamedThing response to meiotic recombination checkpoint signaling A process that occurs in response to signals generated as a result of meiotic recombination checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl meiotic recombination checkpoint effector process|response to signal involved in meiotic recombination checkpoint mah 2010-12-09T11:37:01Z biological_process owl:Class GO:0140021 biolink:NamedThing mitochondrial ADP transmembrane transport The process in which ADP is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl pg 2017-04-10T15:14:34Z biological_process owl:Class GO:0106225 biolink:NamedThing peptidyl-lysine 2-hydroxyisobutyrylation The 2-hydroxyisobutyrylation of a lysine residue in a protein. tmpzr1t_l9r_go_relaxed.owl hjd 2019-10-17T18:51:15Z biological_process owl:Class GO:0044675 biolink:NamedThing formyl-methanofuran dehydrogenase (tungsten enzyme) complex A protein complex consisting of four polypeptides which also contains tungsten, a molybdopterin guanine dinucleotide, and iron-sulfur clusters. This protein complex catalyzes the reversible conversion of CO2 and methanofuran to formylmethanofuran during methanogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-09T10:54:49Z cellular_component owl:Class GO:0072730 biolink:NamedThing response to papulacandin B Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a papulacandin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-05-31T11:30:32Z biological_process owl:Class GO:0046408 biolink:NamedThing chlorophyll synthetase activity Catalysis of the reaction: chlorophyllide a + 2 H(+) + phytyl diphosphate = chlorophyll a + diphosphate. tmpzr1t_l9r_go_relaxed.owl chlorophyll synthase activity|chlorophyllide-a:phytyl-diphosphate phytyltransferase activity RHEA:17317|MetaCyc:RXN1F-66|EC:2.5.1.62|KEGG_REACTION:R06284 GO:0043787 molecular_function owl:Class GO:0048406 biolink:NamedThing nerve growth factor binding Binding to nerve growth factor (NGF). tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKA receptor activity|NGF binding|beta-nerve growth factor binding molecular_function owl:Class GO:0043121 biolink:NamedThing neurotrophin binding Binding to a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKB receptor activity|neurotrophin TRKA receptor activity|NT-4/5 binding|NT4 binding|neurotrophin TRK receptor activity|NT3 binding|neurotrophin 3 binding|NT-4 binding|NT5 binding|neurotrophin-3 binding|NT-3 binding|neurotrophin 4/5 binding|neurotrophic factor binding|NT-5 binding|neurotrophin-4/5 binding|NT 4/5 binding|neurotrophin TRKC receptor activity Note that mammalian NT-5 was initially named differently from amphibian NT-4 because of sequence differences, but the two genes were later shown to be functionally equivalent [SF:919858]. GO:0048405|GO:0048404 molecular_function owl:Class GO:0002473 biolink:NamedThing non-professional antigen presenting cell antigen processing and presentation The process in which a non-professional antigen presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. Non-professional antigen presenting cells include all cell types but dendritic cells, B cells, T cells, monocytes, macrophages, and neutrophils. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009997 biolink:NamedThing negative regulation of cardioblast cell fate specification Any process that restricts, stops or prevents a cell from specifying into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl inhibition of cardioblast cell fate specification|down regulation of cardioblast cell fate specification|suppression of cardioblast cell fate|down-regulation of cardioblast cell fate specification|downregulation of cardioblast cell fate specification GO:0042687 biological_process owl:Class GO:0048885 biolink:NamedThing neuromast deposition The process in which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in a developing lateral line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062045 biolink:NamedThing L-lysine alpha-aminotransferase Catalysis of the reaction: L-lysine + pyruvate= epsilon-amino-alpha-ketocaproic acid (KAC) + alanine. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-11T12:13:57Z molecular_function owl:Class GO:0099171 biolink:NamedThing presynaptic modulation of chemical synaptic transmission Any process, acting in the presynapse that results in modulation of chemical synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-11T17:09:31Z biological_process owl:Class GO:0046221 biolink:NamedThing pyridine catabolic process The chemical reactions and pathways resulting in the breakdown of pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor. tmpzr1t_l9r_go_relaxed.owl pyridine degradation|pyridine breakdown|pyridine catabolism biological_process owl:Class GO:0004386 biolink:NamedThing helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. tmpzr1t_l9r_go_relaxed.owl ATP-dependent helicase activity https://github.com/geneontology/go-ontology/issues/21393 Reactome:R-HSA-169468|Reactome:R-HSA-5686410|Reactome:R-HSA-169461|Reactome:R-HSA-5690996 Note that most helicases catalyze processive duplex unwinding. GO:0008026 molecular_function owl:Class GO:0036415 biolink:NamedThing regulation of tRNA stability Any process that modulates the propensity of transfer RNA (tRNA) molecules to degradation. Includes processes that both stabilize and destabilize tRNAs. tmpzr1t_l9r_go_relaxed.owl bf 2013-08-22T15:22:13Z biological_process owl:Class GO:0002873 biolink:NamedThing positive regulation of natural killer cell tolerance induction Any process that activates or increases the frequency, rate, or extent of natural killer cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl upregulation of natural killer cell tolerance induction|stimulation of natural killer cell tolerance induction|up-regulation of natural killer cell tolerance induction|positive regulation of NK cell tolerance induction|up regulation of natural killer cell tolerance induction|activation of natural killer cell tolerance induction biological_process owl:Class GO:1900305 biolink:NamedThing positive regulation of laminaritriose transport Any process that activates or increases the frequency, rate or extent of laminaritriose transport. tmpzr1t_l9r_go_relaxed.owl up regulation of laminaritriose transport|up-regulation of laminaritriose transport|activation of laminaritriose transport|upregulation of laminaritriose transport tt 2012-04-05T07:58:06Z biological_process owl:Class GO:0045324 biolink:NamedThing late endosome to vacuole transport The directed movement of substances from late endosomes to the vacuole. In yeast, after transport to the prevacuolar compartment, endocytic content is delivered to the late endosome and on to the vacuole. This pathway is analogous to endosome to lysosome transport. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005030 biolink:NamedThing neurotrophin receptor activity Combining with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth, and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140440 biolink:NamedThing protein-cysteine S-oleoyltransferase activity Catalysis of the transfer of an oleoyl (systematic name, (9Z)-octadecenoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: (9Z)-octadecenoyl-CoA + L-cysteinyl-[protein] = CoA + S-(9Z-octadecenoyl)-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18882 RHEA:59744 pg 2020-03-11T09:56:11Z molecular_function owl:Class GO:1990713 biolink:NamedThing survivin complex A protein complex that negatively regulates apoptotic processes. In human, this anti-apoptotic complex is a homodimer of BIRC5 (survivin) and provides one survivin molecule to the chromosomal passenger complex (CPC). tmpzr1t_l9r_go_relaxed.owl Baculoviral IAP repeat-containing protein 5 complex|survivin homodimer complex An example of this is BIRC5 in human (UniProt symbol O15392) in PMID:10949038 (inferred from physical interaction). bhm 2015-03-26T14:21:46Z cellular_component owl:Class GO:0010187 biolink:NamedThing negative regulation of seed germination Any process that stops, prevents, or reduces the frequency, rate or extent of seed germination. tmpzr1t_l9r_go_relaxed.owl down-regulation of seed germination|inhibition of seed germination|down regulation of seed germination|downregulation of seed germination biological_process owl:Class GO:0005119 biolink:NamedThing smoothened binding Binding to a smoothened (smo) protein, which interacts with patched to transmit hedgehog signals. tmpzr1t_l9r_go_relaxed.owl smo ligand|smoothened ligand|smo binding molecular_function owl:Class GO:1901948 biolink:NamedThing 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate. tmpzr1t_l9r_go_relaxed.owl 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate catabolism|5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate breakdown|5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate degradation ms 2013-02-18T15:50:45Z biological_process owl:Class GO:0050450 biolink:NamedThing citrate (Re)-synthase activity Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the re-face of oxaloacetate; acetyl-CoA provides the two carbon atoms of the pro-R carboxymethyl group. tmpzr1t_l9r_go_relaxed.owl citrate oxaloacetate-lyase [(pro-3R)-CH2COO-rightacetyl-CoA]|acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing, (pro-R)-carboxymethyl-forming]|Re-citrate-synthase activity|(R)-citrate synthase activity|citrate oxaloacetate-lyase ((pro-3R)-CH(2)COO(-)->acetyl-CoA) activity EC:2.3.3.3|MetaCyc:CITRATE-RE-SYNTHASE-RXN molecular_function owl:Class GO:0036440 biolink:NamedThing citrate synthase activity Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R00351|RHEA:16845 bf 2013-09-30T16:21:50Z molecular_function owl:Class GO:0030310 biolink:NamedThing poly-N-acetyllactosamine catabolic process The chemical reactions and pathways resulting in the breakdown of poly-N-acetyllactosamine, a carbohydrate composed of N-acetyllactosamine repeats (Gal-beta-1,4-GlcNAc-beta-1,3)n. tmpzr1t_l9r_go_relaxed.owl poly-N-acetyllactosamine degradation|poly-N-acetyllactosamine breakdown|poly-N-acetyllactosamine catabolism biological_process owl:Class GO:0035342 biolink:NamedThing positive regulation of inosine transport Any process that activates or increases the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl positive regulation of hypoxanthine riboside transport bf 2010-03-04T10:05:03Z biological_process owl:Class GO:0035341 biolink:NamedThing regulation of inosine transport Any process that modulates the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of hypoxanthine riboside transport bf 2010-03-04T10:03:51Z biological_process owl:Class GO:1905402 biolink:NamedThing regulation of activated CD8-positive, alpha-beta T cell apoptotic process Any process that modulates the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|regulation of activated CD8-positive, alpha-beta T-cell apoptosis|regulation of activated CD8-positive, alpha-beta T cell apoptosis|regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process pga 2016-08-25T09:13:56Z biological_process owl:Class GO:0033227 biolink:NamedThing dsRNA transport The directed movement of dsRNA, double-stranded ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052645 biolink:NamedThing F420-0 metabolic process The chemical reactions and pathways involving F420-0 (5-O-{[(1S)-1-carboxyethoxy](hydroxy)phosphoryl}-1-deoxy-1-(8-hydroxy-2,4-dioxo-2H-pyrimido[4,5-b]quinolin-10(4H)-yl)-D-ribitol), the fragment of coenzyme F420 remaining after formal hydrolytic removal of all of the glutamate residues. tmpzr1t_l9r_go_relaxed.owl coenzyme F420-0 metabolic process|F420-0 metabolism|coenzyme F420-0 metabolism|F(420)-0 metabolic process ai 2010-09-22T04:11:38Z biological_process owl:Class GO:0008734 biolink:NamedThing L-aspartate oxidase activity Catalysis of the reaction: L-aspartate + O2 = iminosuccinate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl L-aspartate:oxygen oxidoreductase EC:1.4.3.16|MetaCyc:L-ASPARTATE-OXID-RXN|RHEA:25876|MetaCyc:RXN-9772 molecular_function owl:Class GO:0015922 biolink:NamedThing aspartate oxidase activity Catalysis of the reaction: aspartate + O2 = iminosuccinate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102577 biolink:NamedThing 3-oxo-palmitate decarboxylase activity Catalysis of the reaction: 3-oxopalmitic acid + H+ = 2-pentadecanone + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl EC:4.1.1.56|MetaCyc:RXN-15283 molecular_function owl:Class GO:0033359 biolink:NamedThing lysine biosynthetic process via diaminopimelate and N-succinyl-2-amino-6-ketopimelate The chemical reactions and pathways resulting in the formation of lysine, via the intermediates diaminopimelate and N-succinyl-2-amino-6-ketopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in four enzymatic steps. tmpzr1t_l9r_go_relaxed.owl lysine biosynthesis via diaminopimelic acid and N-succinyl-2-amino-6-ketopimelate|lysine biosynthetic process via diaminopimelic acid and N-succinyl-2-amino-6-ketopimelate|lysine anabolism via diaminopimelate and N-succinyl-2-amino-6-ketopimelate|lysine formation via diaminopimelate and N-succinyl-2-amino-6-ketopimelate|lysine synthesis via diaminopimelate and N-succinyl-2-amino-6-ketopimelate MetaCyc:DAPLYSINESYN-PWY biological_process owl:Class GO:0090643 biolink:NamedThing inflorescence phyllotactic patterning The radial pattern formation process that results in the formation of flowers around a central axis in an inflorescence meristem. tmpzr1t_l9r_go_relaxed.owl tb 2015-05-05T14:25:09Z biological_process owl:Class GO:0060771 biolink:NamedThing phyllotactic patterning The radial pattern formation process that results in the formation of plant organs (leaves or leaf-like structures) or flower primordia around a central axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T06:20:33Z biological_process owl:Class GO:0035607 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development The series of molecular signals generated as a consequence of a fibroblast growth factor-type receptor binding to one of its physiological ligands, which contributes to the progression of the orbitofrontal cortex over time from its initial formation until its mature state. tmpzr1t_l9r_go_relaxed.owl FGF receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signalling pathway involved in orbitofrontal cortex development|FGFR signaling pathway involved in orbitofrontal cortex development bf 2010-11-16T11:30:19Z biological_process owl:Class GO:0010462 biolink:NamedThing regulation of light-activated voltage-gated calcium channel activity Any process that modulates the frequency, rate or extent of light-activated voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071954 biolink:NamedThing chemokine (C-C motif) ligand 11 production The appearance of chemokine (C-C motif) ligand 11 (CCL11, also known as eotaxin-1) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL11 production|CCL-11 production|eotaxin production|eotaxin-1 production|C-C motif chemokine 11 production mah 2010-10-08T12:10:34Z biological_process owl:Class GO:0031631 biolink:NamedThing negative regulation of synaptic vesicle fusion to presynaptic active zone membrane Any process that stops, prevents, or reduces the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl downregulation of synaptic vesicle fusion to presynaptic active zone membrane|negative regulation of synaptic vesicle fusion to presynaptic membrane|down regulation of synaptic vesicle fusion to presynaptic active zone membrane|down-regulation of synaptic vesicle fusion to presynaptic active zone membrane|negative regulation of synaptic vesicle fusion to pre-synaptic membrane|negative regulation of synaptic vesicle fusion to pre-synaptic active zone membrane|inhibition of synaptic vesicle fusion to presynaptic membrane|down-regulation of synaptic vesicle fusion to presynaptic membrane|down regulation of synaptic vesicle fusion to presynaptic membrane|downregulation of synaptic vesicle fusion to presynaptic membrane biological_process owl:Class GO:1901633 biolink:NamedThing negative regulation of synaptic vesicle membrane organization Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle membrane organization. tmpzr1t_l9r_go_relaxed.owl inhibition of synaptic vesicle membrane organisation|inhibition of synaptic vesicle membrane organization|down regulation of synaptic vesicle membrane organisation|down regulation of SLMV biogenesis|downregulation of synaptic vesicle membrane organization and biogenesis|down-regulation of synaptic vesicle membrane organization and biogenesis|inhibition of synaptic vesicle membrane organization and biogenesis|down-regulation of synaptic vesicle membrane organization|negative regulation of synaptic vesicle membrane organisation|inhibition of SLMV biogenesis|down-regulation of synaptic vesicle membrane organisation|downregulation of synaptic vesicle membrane organisation|negative regulation of synaptic vesicle membrane organization and biogenesis|negative regulation of SLMV biogenesis|down-regulation of SLMV biogenesis|down regulation of synaptic vesicle membrane organization|downregulation of synaptic vesicle membrane organization|downregulation of SLMV biogenesis|down regulation of synaptic vesicle membrane organization and biogenesis ans 2012-11-15T11:40:55Z biological_process owl:Class GO:0033581 biolink:NamedThing protein galactosylation in Golgi The addition of a galactose unit to a protein amino acid in any compartment of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl protein amino acid galactosylation in Golgi biological_process owl:Class GO:0033578 biolink:NamedThing protein glycosylation in Golgi The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in any compartment of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl terminal glycosylation|protein amino acid glycosylation in Golgi biological_process owl:Class GO:0103007 biolink:NamedThing indole-3-acetate carboxyl methyltransferase activity Catalysis of the reaction: indole-3-acetate + S-adenosyl-L-methionine <=> methyl (indol-3-yl)acetate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9825|RHEA:36131|EC:2.1.1.278 molecular_function owl:Class GO:0032671 biolink:NamedThing regulation of interleukin-27 production Any process that modulates the frequency, rate, or extent of interleukin-27 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-27 synthesis|regulation of IL-27 production|regulation of interleukin-27 formation|regulation of interleukin-27 biosynthetic process GO:0045531 biological_process owl:Class GO:0032309 biolink:NamedThing icosanoid secretion The controlled release of icosanoids, any of a group of C20 polyunsaturated fatty acids from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl eicosanoid secretion biological_process owl:Class GO:0042279 biolink:NamedThing nitrite reductase (cytochrome, ammonia-forming) activity Catalysis of the reaction: NH3 + 2 H2O + 6 ferricytochrome c = nitrite + 6 ferrocytochrome c + 7 H+. tmpzr1t_l9r_go_relaxed.owl multiheme nitrite reductase activity|cytochrome c552 activity|ammonia:ferricytochrome-c oxidoreductase activity|cytochrome c nitrite reductase activity|nitrite reductase (cytochrome; ammonia-forming) EC:1.7.2.2|MetaCyc:1.7.2.2-RXN|Wikipedia:Cytochrome_c_nitrite_reductase|RHEA:13089 molecular_function owl:Class GO:0031116 biolink:NamedThing positive regulation of microtubule polymerization Any process that activates or increases the frequency, rate or extent of microtubule polymerization. tmpzr1t_l9r_go_relaxed.owl up regulation of microtubule polymerization|stimulation of microtubule polymerization|activation of microtubule polymerization|up-regulation of microtubule polymerization|upregulation of microtubule polymerization biological_process owl:Class GO:0031112 biolink:NamedThing positive regulation of microtubule polymerization or depolymerization Any process that activates or increases the frequency, rate or extent of microtubule polymerization or depolymerization. tmpzr1t_l9r_go_relaxed.owl stimulation of microtubule polymerization or depolymerization|upregulation of microtubule polymerization or depolymerization|up regulation of microtubule polymerization or depolymerization|up-regulation of microtubule polymerization or depolymerization|activation of microtubule polymerization or depolymerization biological_process owl:Class GO:0050601 biolink:NamedThing myristoyl-CoA 11-(Z) desaturase activity Catalysis of the reaction: myristoyl-CoA + NAD(P)H + H+ + O2 = (Z)-11-tetradecenoyl-CoA + NAD(P)+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl fatty acid delta(11)-desaturase|delta(11)-palmitoyl-CoA desaturase|Z/E11-desaturase|delta(11)-fatty-acid desaturase|delta(11) desaturase EC:1.14.19.5|MetaCyc:1.14.99.32-RXN|RHEA:25852 molecular_function owl:Class GO:1903587 biolink:NamedThing regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis Any process that modulates the frequency, rate or extent of blood vessel endothelial cell proliferation involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis pga 2014-11-04T11:39:31Z biological_process owl:Class GO:1904783 biolink:NamedThing positive regulation of NMDA glutamate receptor activity Any process that activates or increases the frequency, rate or extent of NMDA glutamate receptor activity. tmpzr1t_l9r_go_relaxed.owl activation of N-methyl-D-aspartate selective glutamate receptor activity|activation of NMDA receptor|up-regulation of N-methyl-D-aspartate selective glutamate receptor activity|activation of NMDA glutamate receptor activity|upregulation of NMDA glutamate receptor activity|upregulation of N-methyl-D-aspartate selective glutamate receptor activity|upregulation of NMDA receptor|up-regulation of NMDA glutamate receptor activity|up regulation of NMDA receptor|positive regulation of N-methyl-D-aspartate selective glutamate receptor activity|up-regulation of NMDA receptor|up regulation of NMDA glutamate receptor activity|up regulation of N-methyl-D-aspartate selective glutamate receptor activity|positive regulation of NMDA receptor mr 2015-10-30T19:39:37Z biological_process owl:Class GO:0031203 biolink:NamedThing posttranslational protein targeting to membrane, docking The process in which the signal sequence of a translated protein binds to and forms a complex with the Sec complex. tmpzr1t_l9r_go_relaxed.owl Sec-translated protein complex assembly|protein docking during posttranslational protein targeting to membrane|posttranslational protein membrane targeting, docking biological_process owl:Class GO:0009582 biolink:NamedThing detection of abiotic stimulus The series of events in which an (non-living) abiotic stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of abiotic stimulus biological_process owl:Class GO:0002618 biolink:NamedThing positive regulation of macrophage antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of macrophage antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl upregulation of macrophage antigen processing and presentation|up regulation of macrophage antigen processing and presentation|stimulation of macrophage antigen processing and presentation|up-regulation of macrophage antigen processing and presentation|activation of macrophage antigen processing and presentation biological_process owl:Class GO:0046197 biolink:NamedThing orcinol biosynthetic process The chemical reactions and pathways resulting in the formation of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants. tmpzr1t_l9r_go_relaxed.owl orcinol formation|orcinol biosynthesis|orcinol anabolism|orcinol synthesis biological_process owl:Class GO:0018312 biolink:NamedThing peptidyl-serine ADP-ribosylation The transfer, from NAD, of ADP-ribose to peptidyl-serine to form peptidyl-O-(ADP-ribosyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0237 biological_process owl:Class GO:1900748 biolink:NamedThing positive regulation of vascular endothelial growth factor signaling pathway Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl up regulation of VEGF-activated signaling pathway|upregulation of vascular endothelial growth factor signaling pathway|up-regulation of vascular endothelial growth factor signaling pathway|up regulation of vascular endothelial growth factor signalling pathway|positive regulation of VEGF-activated signaling pathway|positive regulation of vascular endothelial growth factor signalling pathway|upregulation of VEGF signaling|up-regulation of VEGF-activated signaling pathway|up-regulation of vascular endothelial growth factor signalling pathway|up regulation of VEGF signaling|upregulation of VEGF-activated signaling pathway|up regulation of vascular endothelial growth factor signaling pathway|activation of VEGF-activated signaling pathway|up-regulation of VEGF signaling|positive regulation of VEGF signaling|upregulation of vascular endothelial growth factor signalling pathway|activation of vascular endothelial growth factor signaling pathway|activation of VEGF signaling|activation of vascular endothelial growth factor signalling pathway pm 2012-05-29T08:28:36Z biological_process owl:Class GO:1903026 biolink:NamedThing negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding. tmpzr1t_l9r_go_relaxed.owl downregulation of RNA polymerase II regulatory region sequence-specific DNA binding|inhibition of RNA polymerase II regulatory region sequence-specific DNA binding|down regulation of RNA polymerase II regulatory region sequence-specific DNA binding|down-regulation of RNA polymerase II regulatory region sequence-specific DNA binding dph 2014-05-15T17:56:00Z biological_process owl:Class GO:0008535 biolink:NamedThing respiratory chain complex IV assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms. tmpzr1t_l9r_go_relaxed.owl cytochrome c oxidase biogenesis|cytochrome c oxidase complex assembly biological_process owl:Class GO:0052877 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and a copper protein is the acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.4.9.- molecular_function owl:Class GO:0033827 biolink:NamedThing high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity Catalysis of the transfer of an N-acetyl-D-glucosamine residue from UDP-N-acetyl-D-glucosamine to the 4-position of a mannose linked alpha-1,6 to the core mannose of high-mannose oligosaccharides produced by Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity|UDP-GlcNAc:oligosaccharide beta-N-acetylglucosaminyltransferase activity|acetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity MetaCyc:2.4.1.197-RXN|EC:2.4.1.197 molecular_function owl:Class GO:1900436 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to starvation Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl up-regulation of filamentous growth of a population of unicellular organisms in response to starvation|up regulation of filamentous growth of a population of unicellular organisms in response to starvation|upregulation of filamentous growth of a population of unicellular organisms in response to starvation|activation of filamentous growth of a population of unicellular organisms in response to starvation di 2012-04-25T05:55:05Z biological_process owl:Class GO:0043488 biolink:NamedThing regulation of mRNA stability Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004398 biolink:NamedThing histidine decarboxylase activity Catalysis of the reaction: L-histidine = histamine + CO2. tmpzr1t_l9r_go_relaxed.owl L-histidine carboxy-lyase activity|L-histidine carboxy-lyase (histamine-forming)|L-histidine decarboxylase activity MetaCyc:HISTIDINE-DECARBOXYLASE-RXN|RHEA:20840|EC:4.1.1.22|Reactome:R-HSA-977301 molecular_function owl:Class GO:0047388 biolink:NamedThing [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase Catalysis of the reaction: adenylyl-[L-glutamate:ammonia ligase (ADP-forming)] + H2O = AMP + [L-glutamate:ammonia ligase (ADP-forming)]. tmpzr1t_l9r_go_relaxed.owl adenylyl-glutamate-ammonia ligase hydrolase activity|adenylyl(glutamine synthetase) hydrolase activity|adenylyl-[glutamate-ammonia ligase] hydrolase activity|adenylyl-L-glutamate:ammonia ligase (ADP-forming) adenylylhydrolase activity|adenylyl-glutamine-synthetasehydrolase activity KEGG_REACTION:R03474|EC:2.7.7.89|RHEA:43716|MetaCyc:3.1.4.15-RXN Formerly EC:3.1.4.15. molecular_function owl:Class GO:0052808 biolink:NamedThing reduced coenzyme F420:NADP+ oxidoreductase activity Catalysis of the reaction: NADP+ + 1,5-dihydrocoenzyme F420 = NADPH + H+ + coenzyme F420. 1,5-dihydrocoenzyme F420 is also known as reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl F420H2:NADP+ oxidoreductase activity|coenzyme F420-dependent NADP reductase activity|coenzyme F420-dependent NADP oxidoreductase activity|F420H2:NADP oxidoreductase activity|NADP+:F420 oxidoreductase activity EC:1.5.1.40 ai 2011-09-22T04:08:13Z molecular_function owl:Class GO:1904667 biolink:NamedThing negative regulation of ubiquitin protein ligase activity Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of ubiquitin ligase activity|negative regulation of APC-fizzy related complex activity|downregulation of ubiquitin protein ligase activity|down-regulation of protein ubiquitination activity|downregulation of ubiquitin ligase activity|downregulation of E3|negative regulation of anaphase-promoting complex activity during mitotic cell cycle|inhibition of E3|down-regulation of ubiquitin ligase activity|negative regulation of E3|downregulation of protein ubiquitination activity|negative regulation of cyclosome activity during mitotic cell cycle|negative regulation of APC activity during mitotic cell cycle|down regulation of protein ubiquitination activity|down regulation of ubiquitin ligase activity|negative regulation of mitotic anaphase-promoting complex activity|negative regulation of APC-Cdc20 complex activity|down regulation of ubiquitin protein ligase activity|down-regulation of ubiquitin protein ligase activity|negative regulation of protein ubiquitination activity|negative regulation of APC/C activity during mitotic cell cycle|down-regulation of E3|down regulation of E3|inhibition of ubiquitin protein ligase activity|inhibition of ubiquitin ligase activity|inhibition of protein ubiquitination activity dph 2015-09-08T15:27:05Z GO:0060564|GO:1904190 biological_process owl:Class GO:0046626 biolink:NamedThing regulation of insulin receptor signaling pathway Any process that modulates the frequency, rate or extent of insulin receptor signaling. tmpzr1t_l9r_go_relaxed.owl regulation of insulin receptor signalling pathway biological_process owl:Class GO:0032094 biolink:NamedThing response to food Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048320 biolink:NamedThing axial mesoderm formation The process that gives rise to the axial mesoderm. This process pertains to the initial formation of the structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905468 biolink:NamedThing regulation of clathrin-coated pit assembly Any process that modulates the frequency, rate or extent of clathrin-coated pit assembly. tmpzr1t_l9r_go_relaxed.owl regulation of clathrin-coated pit formation|regulation of coated pit assembly|regulation of coated pit formation bf 2016-09-20T10:04:37Z biological_process owl:Class GO:1900371 biolink:NamedThing regulation of purine nucleotide biosynthetic process Any process that modulates the frequency, rate or extent of purine nucleotide biosynthetic processes. tmpzr1t_l9r_go_relaxed.owl regulation of purine nucleotide formation|regulation of purine nucleotide synthesis|regulation of purine nucleotide biosynthesis|regulation of purine nucleotide anabolism krc 2012-04-17T12:32:07Z biological_process owl:Class GO:0072393 biolink:NamedThing microtubule anchoring at microtubule organizing center Any process in which a microtubule is maintained in a specific location in a cell by attachment to a microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl microtubule anchoring at microtubule organising centre|microtubule anchoring at MTOC mah 2010-12-07T11:54:35Z biological_process owl:Class GO:0120119 biolink:NamedThing flagellum attachment zone A network of cytoskeletal and membranous connections responsible for the lateral attachment of the cilium to the cell body in some trypanosomatid species. tmpzr1t_l9r_go_relaxed.owl FAZ Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. krc 2017-12-11T22:46:43Z cellular_component owl:Class GO:0038033 biolink:NamedThing positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a VEGFR on the surface of a cell, which activates or increases the frequency, rate or extent of endothelial cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl VEGF-VEGFR-induced endothelial cell chemotaxis|positive regulation of endothelial cell chemotaxis by VEGF/VEGFR signaling pathway|vascular endothelial growth factor receptor signaling pathway involved in endothelial cell chemotaxis|VEGF-mediated chemotactic endothelial cell migration|positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signalling pathway bf 2011-09-19T02:36:37Z biological_process owl:Class GO:0020038 biolink:NamedThing subpellicular network A mechanically stable cytoskeletal structure associated with the cytoplasmic face of the pellicle and surrounding the microtubule-based cytoskeleton. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019306 biolink:NamedThing GDP-D-rhamnose biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-D-rhamnose, a substance composed of rhamnose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-D-rhamnose formation|GDP-D-rhamnose biosynthesis|GDP-D-rhamnose synthesis|GDP-D-rhamnose anabolism MetaCyc:GDPRHAMSYN-PWY biological_process owl:Class GO:0046382 biolink:NamedThing GDP-D-rhamnose metabolic process The chemical reactions and pathways involving GDP-D-rhamnose, a substance composed of rhamnose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-D-rhamnose metabolism biological_process owl:Class GO:0102755 biolink:NamedThing gibberellin-15(closed lactone form),2-oxoglutarate:oxygen oxidoreductase (3beta-hydroxylating) activity Catalysis of the reaction: gibberellin A15 (closed lactone form) + O2 + 2-oxoglutarate = gibberellin A37 (closed lactone form) + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7680 molecular_function owl:Class GO:0033144 biolink:NamedThing negative regulation of intracellular steroid hormone receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of steroid hormone receptor signaling pathway|negative regulation of steroid hormone receptor signalling pathway biological_process owl:Class GO:2000400 biolink:NamedThing positive regulation of thymocyte aggregation Any process that activates or increases the frequency, rate or extent of thymocyte aggregation. tmpzr1t_l9r_go_relaxed.owl positive regulation of thymic lymphocyte aggregation|positive regulation of T cell precursor aggregation|positive regulation of immature T-lymphocyte aggregation|positive regulation of immature T-cell aggregation|positive regulation of immature T cell aggregation mah 2011-02-22T02:50:01Z biological_process owl:Class GO:2000398 biolink:NamedThing regulation of thymocyte aggregation Any process that modulates the frequency, rate or extent of thymocyte aggregation. tmpzr1t_l9r_go_relaxed.owl regulation of thymic lymphocyte aggregation|regulation of immature T-cell aggregation|regulation of immature T-lymphocyte aggregation|regulation of T cell precursor aggregation|regulation of immature T cell aggregation mah 2011-02-22T02:49:19Z biological_process owl:Class GO:0102534 biolink:NamedThing apigenin-7,4'-dimethyl ether 6-hydroxylase activity Catalysis of the reaction: apigenin-7,4'-dimethyl ether + O2 + NADPH + H+ <=> ladanein + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14751 molecular_function owl:Class GO:0090255 biolink:NamedThing cell proliferation involved in imaginal disc-derived wing morphogenesis The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to imaginal disc-derived wing morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:40:46Z biological_process owl:Class GO:0140585 biolink:NamedThing promoter-enhancer loop anchoring activity Bridging together two cis-regulatory elements, colloquially referred to as promoters and/or enhancers, holding two loop anchors together to maintain a chromatin loop. tmpzr1t_l9r_go_relaxed.owl enhancer-promoter loop anchoring activity https://github.com/geneontology/go-ontology/issues/20204 Note that GO does not separately defines enhancers, since this concept is very close to that of cis-regulatory elements. However the literature refers to 'promoter-enhancer loops' to describe loops that bring together cis-regulatory elements. Note also that while SO defines 'promoter' as the core promoter, here it is used to mean a cis-regulatory element. pg 2021-02-04T14:50:04Z molecular_function owl:Class GO:0030158 biolink:NamedThing protein xylosyltransferase activity Catalysis of the transfer of a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxyl group of an acceptor protein substrate. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose:core protein xylosyltransferase activity|UDP-D-xylose:protein beta-D-xylosyltransferase activity|UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase activity|uridine diphosphoxylose-protein xylosyltransferase activity|UDP-D-xylose:core protein beta-D-xylosyltransferase activity|UDP-xylose-core protein beta-D-xylosyltransferase activity|peptide O-xylosyltransferase activity|uridine diphosphoxylose-core protein beta-xylosyltransferase activity MetaCyc:2.4.2.26-RXN|Reactome:R-HSA-1878002|RHEA:50192|EC:2.4.2.26 molecular_function owl:Class GO:1900187 biolink:NamedThing regulation of cell adhesion involved in single-species biofilm formation Any process that modulates the frequency, rate or extent of cell adhesion involved in single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl regulation of cell adhesion during single-species biofilm formation di 2012-03-19T12:38:45Z biological_process owl:Class GO:0014809 biolink:NamedThing regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion Any process that modulates the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090362 biolink:NamedThing positive regulation of platelet-derived growth factor production Any process that increases the rate, frequency, or extent of the appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T10:32:27Z biological_process owl:Class GO:1990854 biolink:NamedThing vacuole-ER tethering The attachment of a lytic vacuole to the endoplasmic reticulum, which may facilitate exchange of metabolites between the organelles. tmpzr1t_l9r_go_relaxed.owl vacuole-endoplasmic reticulum attachment|vacuole-endoplasmic reticulum tethering|vacuole-ER attachment mcc 2015-09-15T18:50:04Z biological_process owl:Class GO:1905893 biolink:NamedThing positive regulation of cellular response to thapsigargin Any process that activates or increases the frequency, rate or extent of cellular response to thapsigargin. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular response to thapsigargin|up regulation of cellular response to thapsigargin|upregulation of cellular response to thapsigargin|activation of cellular response to thapsigargin bc 2017-02-01T11:36:24Z biological_process owl:Class GO:1905891 biolink:NamedThing regulation of cellular response to thapsigargin Any process that modulates the frequency, rate or extent of cellular response to thapsigargin. tmpzr1t_l9r_go_relaxed.owl bc 2017-02-01T11:36:07Z biological_process owl:Class GO:0008967 biolink:NamedThing phosphoglycolate phosphatase activity Catalysis of the reaction: 2-phosphoglycolate + H(2)O = glycolate + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-phosphoglycolate phosphohydrolase activity|P-glycolate phosphatase activity|phosphoglycolate hydrolase activity|phosphoglycollate phosphatase activity|2-phosphoglycolate phosphatase activity KEGG_REACTION:R01334|EC:3.1.3.18|RHEA:14369|MetaCyc:GPH-RXN molecular_function owl:Class GO:1902560 biolink:NamedThing GMP reductase complex An oxidoreductase complex which is capable of GMP reductase activity. It catalyses the irreversible reaction: GMP + 2 H(+) + NADPH => IMP + NADP(+) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl guanosine monophosphate reductase|GMPR1 complex|GMP reductase|GMPR2 complex An example of this is GMPR2 in human (UniProt Symbol Q9P2T1) in PMID:12009299 (inferred from direct assay). bhm 2013-12-10T11:54:30Z cellular_component owl:Class GO:0051443 biolink:NamedThing positive regulation of ubiquitin-protein transferase activity Any process that activates, maintains or increases the rate of ubiquitin transferase activity. tmpzr1t_l9r_go_relaxed.owl SCF complex activator|anaphase promoting complex activator|up-regulation of ubiquitin transferase activity|upregulation of ubiquitin transferase activity|anaphase-promoting complex activator|ubiquitin transferase activator|APC activation|APC activator|positive regulation of ubiquitin transferase activity|activation of ubiquitin transferase activity|stimulation of ubiquitin transferase activity|up regulation of ubiquitin ligase activity biological_process owl:Class GO:0008789 biolink:NamedThing altronate dehydratase activity Catalysis of the reaction: D-altronate = 2-dehydro-3-deoxy-D-gluconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-altronate hydro-lyase (2-dehydro-3-deoxy-D-galactonate-forming)|D-altronate hydro-lyase activity EC:4.2.1.7|RHEA:15957|KEGG_REACTION:R01540|MetaCyc:ALTRODEHYDRAT-RXN molecular_function owl:Class GO:0051177 biolink:NamedThing meiotic sister chromatid cohesion The cell cycle process in which sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904356 biolink:NamedThing regulation of telomere maintenance via telomere lengthening Any process that modulates the frequency, rate or extent of telomere maintenance via telomere lengthening. tmpzr1t_l9r_go_relaxed.owl nc 2015-06-12T16:53:16Z biological_process owl:Class GO:0072685 biolink:NamedThing Mre11 complex assembly The aggregation, arrangement and bonding together of a set of components to form an Mre11 complex, a trimeric protein complex that possesses endonuclease activity and is involved in meiotic recombination, DNA repair and checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl Rad50 complex assembly|MRN complex assembly|MRX complex assembly|Rad50-Rad32-Nbs1 complex assembly|RMX complex assembly|RAD50-MRE11-NBN complex assembly mah 2011-05-12T02:52:06Z biological_process owl:Class GO:1990547 biolink:NamedThing mitochondrial phosphate ion transmembrane transport The process in which a phosphate ion is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:50:19Z biological_process owl:Class GO:0008684 biolink:NamedThing 2-oxopent-4-enoate hydratase activity Catalysis of the reaction: 4-hydroxy-2-oxopentanoate = 2-oxopent-4-enoate + H2O. tmpzr1t_l9r_go_relaxed.owl OEH activity|2-keto-4-pentenoate hydratase activity|2-keto-4-pentenoate (vinylpyruvate)hydratase activity|4-hydroxy-2-oxopentanoate hydro-lyase activity|4-hydroxy-2-oxopentanoate hydro-lyase (2-oxopent-4-enoate-forming) UM-BBD_enzymeID:e0078|EC:4.2.1.80|MetaCyc:2-OXOPENT-4-ENOATE-HYDRATASE-RXN|RHEA:22580 GO:0018821 molecular_function owl:Class GO:1904366 biolink:NamedThing negative regulation of chemokinesis Any process that stops, prevents or reduces the frequency, rate or extent of chemokinesis. tmpzr1t_l9r_go_relaxed.owl down regulation of chemokinesis|downregulation of chemokinesis|inhibition of chemokinesis|down-regulation of chemokinesis sl 2015-06-15T22:44:12Z biological_process owl:Class GO:0047417 biolink:NamedThing N-carbamoyl-D-amino acid hydrolase activity Catalysis of the reaction: H2O + N-carbamoyl-D-amino acid = CO2 + NH3 + D-amino acid. tmpzr1t_l9r_go_relaxed.owl N-carbamoyl-D-amino acid amidohydrolase activity RHEA:11000|MetaCyc:3.5.1.77-RXN|EC:3.5.1.77 molecular_function owl:Class GO:0015808 biolink:NamedThing L-alanine transport The directed movement of L-alanine, the L-enantiomer of 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102922 biolink:NamedThing phenylpropanoyltransferase activity Catalysis of the reaction: baccatin III + (3R)-3-amino-3-phenylpropanoyl-CoA = N-debenzoyl-(3'-RS)-2'-deoxytaxol + coenzyme A. tmpzr1t_l9r_go_relaxed.owl RHEA:42488|MetaCyc:RXN-8857 molecular_function owl:Class GO:0021896 biolink:NamedThing forebrain astrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an astrocyte residing in the forebrain. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048708 biolink:NamedThing astrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an astrocyte. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004125 biolink:NamedThing L-seryl-tRNASec selenium transferase activity Catalysis of the reaction: L-seryl-tRNA(Sec) + selenophosphate = L-selenocysteinyl-tRNA(Sec) + H2O + phosphate. tmpzr1t_l9r_go_relaxed.owl L-selenocysteinyl-tRNASel synthase activity|L-selenocysteinyl-tRNA(Sel) synthase activity|cysteinyl-tRNA(Sec)-selenium transferase activity|cysteinyl-tRNA(Sel)-selenium transferase activity|selenocysteine synthase activity|cysteinyl-tRNASel-selenium transferase activity|L-seryl-tRNA(Ser) selenium transferase activity|cysteinyl-tRNASec-selenium transferase activity|L-selenocysteinyl-tRNASec synthase activity|selenophosphate:L-seryl-tRNASec selenium transferase activity|cysteinyl-tRNA(Ser) selenium transferase activity|L-selenocysteinyl-tRNA(Sec) synthase activity|selenocysteinyl-tRNA(Ser) synthase activity EC:2.9.1.1|RHEA:22728|MetaCyc:2.9.1.1-RXN molecular_function owl:Class GO:0047393 biolink:NamedThing glycerol-1,2-cyclic-phosphate 2-phosphodiesterase activity Catalysis of the reaction: glycerol 1,2-cyclic phosphate + H(2)O = glycerol 1-phosphate + H(+). tmpzr1t_l9r_go_relaxed.owl rac-glycerol 1:2-cyclic phosphate 2-phosphodiesterase activity|rac-glycerol-1,2-cyclic-phosphate 2-glycerophosphohydrolase activity RHEA:16493|EC:3.1.4.42|KEGG_REACTION:R02648|MetaCyc:3.1.4.42-RXN molecular_function owl:Class GO:0103064 biolink:NamedThing inositol phosphorylceramide mannosyltransferase activity Catalysis of the reaction: a 1D-myo-inositol-1-phospho-N-[(R)-2-hydroxy-very-long-chain fatty acyl]-(R)-4-hydroxysphingoid base + GDP-alpha-D-mannose = an alpha-D-mannosyl-(1,6)-1D-myo-inositol-1-phospho-N-[(R)-2-hydroxy-very-long-chain fatty acyl]-(R)-4-hydroxysphingoid base + GDP + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.370|https://github.com/geneontology/go-ontology/issues/21803|RHEA:64596|MetaCyc:RXN3O-663 molecular_function owl:Class GO:2001115 biolink:NamedThing methanopterin-containing compound metabolic process The chemical reactions and pathways involving a methanopterin. tmpzr1t_l9r_go_relaxed.owl methanopterin metabolism jl 2011-10-11T11:54:56Z biological_process owl:Class GO:0000024 biolink:NamedThing maltose biosynthetic process The chemical reactions and pathways resulting in the formation of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose). tmpzr1t_l9r_go_relaxed.owl malt sugar biosynthesis|maltose biosynthesis|maltose anabolism|maltose formation|malt sugar biosynthetic process|maltose synthesis biological_process owl:Class GO:0000023 biolink:NamedThing maltose metabolic process The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. tmpzr1t_l9r_go_relaxed.owl malt sugar metabolism|maltose metabolism|malt sugar metabolic process biological_process owl:Class GO:0048321 biolink:NamedThing axial mesodermal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an axial mesoderm cell. tmpzr1t_l9r_go_relaxed.owl axial mesoderm cell differentiation biological_process owl:Class GO:0071752 biolink:NamedThing secretory dimeric IgA immunoglobulin complex A dimeric form of secretory IgA immunoglobulin complex. tmpzr1t_l9r_go_relaxed.owl secretory dimeric IgA antibody|secretory dimeric IgA1 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Dimeric IgA is by far the most common form of polymeric IgA. In human only the IgA1 isotype is capable of a dimeric form. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0071751 biolink:NamedThing secretory IgA immunoglobulin complex A polymeric IgA immunoglobulin complex that is complexed with one chain of secretory component (SC). Polymeric IgA is present in mucosal areas, having been transported via a transcytosis mechanism in mucosal epithelial cells relying on the polymeric Ig receptor, a portion of which then remains bound to the polymeric IgA as secretory component. tmpzr1t_l9r_go_relaxed.owl sIgA antibody|secretory IgA antibody|sIgA1 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. In human only the IgA1 isotype in the polymeric form is capable of becoming secretory IgA. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0006691 biolink:NamedThing leukotriene metabolic process The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid. tmpzr1t_l9r_go_relaxed.owl leukotriene metabolism biological_process owl:Class GO:0032464 biolink:NamedThing positive regulation of protein homooligomerization Any process that activates or increases the frequency, rate or extent of protein homooligomerization. tmpzr1t_l9r_go_relaxed.owl upregulation of protein homooligomerization|up-regulation of protein homooligomerization|activation of protein homooligomerization|stimulation of protein homooligomerization|induction of protein homooligomerization|up regulation of protein homooligomerization biological_process owl:Class GO:0030975 biolink:NamedThing thiamine binding Binding to thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl vitamin B1 binding|thiamin binding molecular_function owl:Class GO:0003349 biolink:NamedThing epicardium-derived cardiac endothelial cell differentiation The process in which an epicardial cell acquires the specialized structural and/or functional features of a cardiac endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T11:17:49Z biological_process owl:Class GO:0034525 biolink:NamedThing 1-naphthaldehyde dehydrogenase activity Catalysis of the reaction: 1-naphthaldehyde + NAD+ + H2O = 1-naphthoic acid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0787 molecular_function owl:Class GO:0033443 biolink:NamedThing AAA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AAA codon. tmpzr1t_l9r_go_relaxed.owl lysine tRNA Note that in the standard genetic code, AAA codes for lysine. molecular_function owl:Class GO:0033054 biolink:NamedThing D-glutamate metabolic process The chemical reactions and pathways involving D-glutamate, the D-enantiomer of the amino acid glutamate, i.e. (2R)-2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl D-glutamate metabolism biological_process owl:Class GO:0031706 biolink:NamedThing subtype 3 bombesin receptor binding Binding to a subtype 3 bombesin receptor. tmpzr1t_l9r_go_relaxed.owl subtype 3 bombesin receptor ligand molecular_function owl:Class GO:0003232 biolink:NamedThing bulbus arteriosus development The process whose specific outcome is the progression of the bulbus arteriosus over time, from its formation to the mature structure. The bulbus arteriosus is an elastic heart chamber. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:05:36Z biological_process owl:Class GO:0021851 biolink:NamedThing neuroblast division in dorsal lateral ganglionic eminence The division of neuroblasts in the dorsal region of the lateral ganglionic eminence. These cells give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001857 biolink:NamedThing complement component C1q receptor activity Combining with the C1q complex, a component of the classical complement cascade, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0086093 biolink:NamedThing G protein-coupled acetylcholine receptor signaling pathway involved in heart process A G protein-coupled acetylcholine receptor signaling pathway, which contributes to a circulatory system process carried out by the heart. tmpzr1t_l9r_go_relaxed.owl M2 receptor signaling pathway involved in heart process|muscarinic receptor signaling pathway involved in heart process|G-protein coupled acetylcholine receptor signaling pathway involved in heart process|G-protein coupled acetylcholine receptor signalling pathway involved in heart process bf biological_process owl:Class GO:0046612 biolink:NamedThing lysosomal proton-transporting V-type ATPase, V1 domain The V1 domain of a proton-transporting V-type ATPase found in the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl lysosomal hydrogen ion-transporting ATPase V1 domain cellular_component owl:Class GO:0033180 biolink:NamedThing proton-transporting V-type ATPase, V1 domain A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900832 biolink:NamedThing D-leucine catabolic process The chemical reactions and pathways resulting in the breakdown of D-leucine. tmpzr1t_l9r_go_relaxed.owl D-leucine breakdown|D-leucine degradation|D-leucine catabolism se 2012-06-06T09:37:40Z biological_process owl:Class GO:0000756 biolink:NamedThing response to pheromone regulating conjugation with mutual genetic exchange Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus regulating the process of conjugation without cellular fusion. tmpzr1t_l9r_go_relaxed.owl response to pheromone triggering conjugation without cellular fusion biological_process owl:Class GO:0071224 biolink:NamedThing cellular response to peptidoglycan Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:36:38Z biological_process owl:Class GO:0019208 biolink:NamedThing phosphatase regulator activity Binds to and modulates the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061095 biolink:NamedThing positive regulation of turning behavior involved in mating Any process that increases the rate, frequency or extent of turning behavior involved in mating. Turning behavior is the sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:12:24Z biological_process owl:Class GO:0004900 biolink:NamedThing erythropoietin receptor activity Combining with erythropoietin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090256 biolink:NamedThing regulation of cell proliferation involved in imaginal disc-derived wing morphogenesis Any process that modulates the frequency, rate, or extent of the multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to imaginal disc-derived wing morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:40:46Z biological_process owl:Class GO:0010755 biolink:NamedThing regulation of plasminogen activation Any process that modulates the rate, frequency or extent of plasminogen activation. Plasminogen activation is the process in which plasminogen is processed to plasmin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048491 biolink:NamedThing retrograde synaptic vesicle transport The directed movement of synaptic vesicle along axonal microtubules from the presynapse to the cell body. tmpzr1t_l9r_go_relaxed.owl retrograde axonal transport of synaptic vesicle biological_process owl:Class GO:0035696 biolink:NamedThing monocyte extravasation The migration of a monocyte from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-28T03:05:52Z biological_process owl:Class GO:0047850 biolink:NamedThing diaminopimelate dehydrogenase activity Catalysis of the reaction: meso-2,6-diaminopimelate + H(2)O + NADP(+) = L-2-amino-6-oxopimelate + H(+) + NADPH + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl meso-2,6-diaminoheptanedioate:NADP+ oxidoreductase (deaminating)|meso-alpha,epsilon-diaminopimelate dehydrogenase activity|meso-diaminopimelate D-dehydrogenase activity|meso-diaminopimelate dehydrogenase activity EC:1.4.1.16|KEGG_REACTION:R02755|RHEA:13561|MetaCyc:DIAMINOPIMELATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0000064 biolink:NamedThing L-ornithine transmembrane transporter activity Enables the transfer of L-ornithine from one side of a membrane to the other. L-ornithine is 2,5-diaminopentanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine/arginine/lysine/ornithine porter activity|L-ornithine transporter activity Reactome:R-HSA-70634 molecular_function owl:Class GO:0051569 biolink:NamedThing regulation of histone H3-K4 methylation Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030810 biolink:NamedThing positive regulation of nucleotide biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides. tmpzr1t_l9r_go_relaxed.owl activation of nucleotide biosynthetic process|up regulation of nucleotide biosynthetic process|up-regulation of nucleotide biosynthetic process|positive regulation of nucleotide synthesis|positive regulation of nucleotide formation|stimulation of nucleotide biosynthetic process|upregulation of nucleotide biosynthetic process|positive regulation of nucleotide biosynthesis|positive regulation of nucleotide anabolism biological_process owl:Class GO:0050320 biolink:NamedThing tartrate epimerase activity Catalysis of the reaction: L-tartrate = (2R,3S)-tartrate. tmpzr1t_l9r_go_relaxed.owl tartaric racemase activity MetaCyc:TARTRATE-EPIMERASE-RXN|RHEA:22212|KEGG_REACTION:R02546|EC:5.1.2.5 molecular_function owl:Class GO:0010414 biolink:NamedThing glucuronoarabinoxylan metabolic process The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid and arabinose side units. tmpzr1t_l9r_go_relaxed.owl glucuronoarabinoxylan metabolism biological_process owl:Class GO:0010416 biolink:NamedThing arabinoxylan-containing compound metabolic process The chemical reactions and pathways involving an arabinoxylan, a polymer containing a beta-1,4-linked D-xylose backbone decorated with arabinose side units. tmpzr1t_l9r_go_relaxed.owl arabinoxylan metabolic process|arabinoxylan metabolism biological_process owl:Class GO:0002666 biolink:NamedThing positive regulation of T cell tolerance induction Any process that activates or increases the frequency, rate, or extent of T cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl positive regulation of T-lymphocyte tolerance induction|up regulation of T cell tolerance induction|positive regulation of T-cell tolerance induction|upregulation of T cell tolerance induction|up-regulation of T cell tolerance induction|positive regulation of T lymphocyte tolerance induction|stimulation of T cell tolerance induction|activation of T cell tolerance induction biological_process owl:Class GO:0006152 biolink:NamedThing purine nucleoside catabolic process The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine nucleoside breakdown|purine nucleoside catabolism|purine nucleoside degradation biological_process owl:Class GO:0042278 biolink:NamedThing purine nucleoside metabolic process The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl purine nucleoside metabolism|purine metabolism|purine metabolic process biological_process owl:Class GO:1903789 biolink:NamedThing regulation of amino acid transmembrane transport Any process that modulates the frequency, rate or extent of amino acid transmembrane transport. tmpzr1t_l9r_go_relaxed.owl regulation of amino acid membrane transport al 2015-01-08T17:42:18Z biological_process owl:Class GO:0015255 biolink:NamedThing propanediol channel activity Enables the facilitated diffusion of propanediol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032115 biolink:NamedThing sorbose reductase activity Catalysis of the reaction: D-glucitol + NADP(+) = L-sorbose + H(+) + NADPH. The reaction may occur, to a minor extent, in the reverse direction. tmpzr1t_l9r_go_relaxed.owl Sou1p|D-glucitol:NADP+ oxidoreductase activity RHEA:14609|EC:1.1.1.289|MetaCyc:1.1.1.289-RXN|KEGG_REACTION:R07346 molecular_function owl:Class GO:0034471 biolink:NamedThing ncRNA 5'-end processing Any process involved in forming the mature 5' end of a non-coding RNA molecule. tmpzr1t_l9r_go_relaxed.owl ncRNA 5' end processing biological_process owl:Class GO:2001133 biolink:NamedThing methane biosynthetic process from methanethiol The chemical reactions and pathways resulting in the formation of a methane from a methanethiol. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T12:32:57Z biological_process owl:Class GO:0106141 biolink:NamedThing flavin prenyltransferase activity Catalysis of the reaction: dimethylallylphosphate + FMNH2 = prenylated FMNH2 + phosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.129|RHEA:37743 hjd 2018-08-17T18:50:00Z molecular_function owl:Class GO:0016602 biolink:NamedThing CCAAT-binding factor complex A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. tmpzr1t_l9r_go_relaxed.owl nuclear transcription factor Y complex|NF-Y transcription factor complex|CBF complex cellular_component owl:Class GO:0101023 biolink:NamedThing vascular endothelial cell proliferation The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001279 biolink:NamedThing regulation of unsaturated fatty acid biosynthetic process Any process that modulates the frequency, rate or extent of unsaturated fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of fatty acid desaturation|regulation of unsaturated fatty acid biosynthesis|regulation of polyunsaturated fatty acid biosynthesis|regulation of unsaturated fatty acid formation|regulation of unsaturated fatty acid synthesis|regulation of unsaturated fatty acid anabolism dgf 2011-12-14T07:48:26Z biological_process owl:Class GO:0004607 biolink:NamedThing phosphatidylcholine-sterol O-acyltransferase activity Catalysis of the reaction: phosphatidylcholine + a sterol = a sterol ester + 1-acylglycerophosphocholine. tmpzr1t_l9r_go_relaxed.owl lecithin--cholesterol acyltransferase activity|phosphatidylcholine:sterol O-acyltransferase activity|phospholipid--cholesterol acyltransferase activity|lecithin:cholesterol acyltransferase activity|LCAT activity|LCAT (lecithin-cholesterol acyltransferase) RHEA:21204|MetaCyc:2.3.1.43-RXN|Reactome:R-HSA-264695|EC:2.3.1.43 molecular_function owl:Class GO:0034120 biolink:NamedThing positive regulation of erythrocyte aggregation Any process that activates or increases the frequency, rate, or extent of erythrocyte aggregation. tmpzr1t_l9r_go_relaxed.owl positive regulation of RBC aggregation|positive regulation of red blood cell aggregation biological_process owl:Class GO:0032099 biolink:NamedThing negative regulation of appetite Any process that reduces appetite. tmpzr1t_l9r_go_relaxed.owl inhibition of appetite|down-regulation of appetite|appetite suppression|downregulation of appetite|down regulation of appetite|negative regulation of hunger biological_process owl:Class GO:0032096 biolink:NamedThing negative regulation of response to food Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a food stimulus. tmpzr1t_l9r_go_relaxed.owl downregulation of response to food|inhibition of response to food|down-regulation of response to food|down regulation of response to food biological_process owl:Class GO:1990243 biolink:NamedThing atf1-pcr1 complex A heterodimeric transcription factor complex composed of the bZIP proteins atf1 and pcr1. The heterodimer binds m26 sites (homologous to CRE). tmpzr1t_l9r_go_relaxed.owl al 2013-11-28T11:40:28Z cellular_component owl:Class GO:0019298 biolink:NamedThing coenzyme B biosynthetic process The chemical reactions and pathways resulting in the formation of coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes. tmpzr1t_l9r_go_relaxed.owl coenzyme B synthesis|coenzyme B formation|coenzyme B anabolism|coenzyme B biosynthesis MetaCyc:P241-PWY biological_process owl:Class GO:1901798 biolink:NamedThing positive regulation of signal transduction by p53 class mediator Any process that activates or increases the frequency, rate or extent of signal transduction by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl up regulation of signal transduction by p53 class mediator|upregulation of signal transduction by p53 class mediator|activation of signal transduction by p53 class mediator|up-regulation of signal transduction by p53 class mediator hjd 2013-01-18T21:51:48Z biological_process owl:Class GO:2000938 biolink:NamedThing positive regulation of cellotriose catabolic process Any process that activates or increases the frequency, rate or extent of cellotriose catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellotriose catabolism tt 2011-08-01T12:45:35Z biological_process owl:Class GO:0036051 biolink:NamedThing protein localization to trailing edge A process in which a protein is transported to, or maintained at, the trailing edge. The trailing edge is the area of a motile cell opposite to the direction of movement. tmpzr1t_l9r_go_relaxed.owl protein localisation to trailing edge bf 2011-12-12T10:44:04Z biological_process owl:Class GO:0006167 biolink:NamedThing AMP biosynthetic process The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate. tmpzr1t_l9r_go_relaxed.owl AMP anabolism|AMP synthesis|AMP biosynthesis|AMP formation biological_process owl:Class GO:0103111 biolink:NamedThing D-glucosamine PTS permease activity Catalysis of the reaction: a [PTS enzyme I]-Npi-phospho-L-histidine + D-glucosamine <=> D-glucosamine 6-phosphate + a [PTS enzyme I]-L-histidine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:TRANS-RXN-167A|EC:2.7.1.69|RHEA:37359 molecular_function owl:Class GO:0051249 biolink:NamedThing regulation of lymphocyte activation Any process that modulates the frequency, rate or extent of lymphocyte activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902901 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion Any positive regulation of transcription from RNA polymerase II promoter that is involved in stress response to cadmium ion. tmpzr1t_l9r_go_relaxed.owl activation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in stress response to cadmium ion|activation of global transcription from RNA polymerase II promoter involved in stress response to cadmium ion|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in response to cadmium ion stress|up regulation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|stimulation of global transcription from RNA polymerase II promoter involved in stress response to cadmium ion|up regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion|positive regulation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|upregulation of global transcription from RNA polymerase II promoter involved in response to cadmium ion stress|upregulation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|up regulation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|positive regulation of global transcription from Pol II promoter involved in response to cadmium ion stress|activation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in response to cadmium toxicity|up-regulation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|upregulation of global transcription from RNA polymerase II promoter involved in response to cadmium toxicity|up regulation of global transcription from RNA polymerase II promoter involved in response to cadmium toxicity|stimulation of global transcription from RNA polymerase II promoter involved in response to cadmium ion stress|up regulation of global transcription from RNA polymerase II promoter involved in stress response to cadmium ion|positive regulation of global transcription from Pol II promoter involved in stress response to cadmium ion|upregulation of global transcription from RNA polymerase II promoter involved in stress response to cadmium ion|stimulation of global transcription from RNA polymerase II promoter involved in response to cadmium toxicity|positive regulation of global transcription from Pol II promoter involved in response to cadmium toxicity|up-regulation of global transcription from RNA polymerase II promoter involved in stress response to cadmium ion|stimulation of transcription from RNA polymerase II promoter involved in response to cadmium ion stress|up-regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion|activation of global transcription from RNA polymerase II promoter involved in response to cadmium toxicity|up regulation of global transcription from RNA polymerase II promoter involved in response to cadmium ion stress|positive regulation of transcription from Pol II promoter involved in response to cadmium ion stress|positive regulation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|upregulation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|positive regulation of transcription from Pol II promoter involved in response to cadmium toxicity|activation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|up-regulation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|stimulation of transcription from RNA polymerase II promoter involved in response to cadmium toxicity|positive regulation of transcription from Pol II promoter involved in stress response to cadmium ion|up-regulation of global transcription from RNA polymerase II promoter involved in response to cadmium ion stress|up-regulation of global transcription from RNA polymerase II promoter involved in response to cadmium toxicity|upregulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion|stimulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion|activation of global transcription from RNA polymerase II promoter involved in response to cadmium ion stress kmv 2014-04-14T18:03:42Z biological_process owl:Class GO:0071004 biolink:NamedThing U2-type prespliceosome A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. tmpzr1t_l9r_go_relaxed.owl yeast U2-type spliceosomal complex B|mammalian U2-type spliceosomal complex A|GT-AG prespliceosome|major prespliceosome mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1900320 biolink:NamedThing positive regulation of methane biosynthetic process from dimethylamine Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from dimethylamine. tmpzr1t_l9r_go_relaxed.owl upregulation of methane biosynthetic process from dimethylamine|up-regulation of methane biosynthetic process from dimethylamine|up regulation of methane biosynthetic process from dimethylamine|activation of methane biosynthetic process from dimethylamine tt 2012-04-06T01:43:40Z biological_process owl:Class GO:1904382 biolink:NamedThing mannose trimming involved in glycoprotein ERAD pathway The removal of one or more alpha 1,2-linked mannose residues from a mannosylated protein that occurs as part of glycoprotein ER-associated glycoprotein degradation (gpERAD). tmpzr1t_l9r_go_relaxed.owl glycoprotein mannose trimming involved in gpERAD|glycoprotein mannose trimming involved in glycoprotein ERAD|protein alpha-1,2-demannosylation involved in gpERAD|protein alpha-1,2-demannosylation involved in glycoprotein ERAD|glycoprotein mannose trimming involved in glycoprotein ERAD pathway|mannose trimming involved in misfolded or incompletely synthesized glycoprotein catabolic process|protein alpha-1,2-demannosylation involved in ER-associated glycoprotein degradation|glycoprotein mannose trimming involved in ER-associated glycoprotein degradation|protein alpha-1,2-demannosylation involved in glycoprotein ERAD pathway bf 2015-06-23T09:46:55Z biological_process owl:Class GO:0035977 biolink:NamedThing protein deglycosylation involved in glycoprotein catabolic process The removal of sugar residues from a glycosylated protein that contributes to the breakdown of a glycoprotein. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-18T10:31:23Z biological_process owl:Class GO:0008556 biolink:NamedThing P-type potassium transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + K+(out) = ADP + phosphate + K+(in). tmpzr1t_l9r_go_relaxed.owl potassium transmembrane transporter activity, phosphorylative mechanism|K(+)-transporting ATPase activity|K+-transporting ATPase activity|potassium ABC transporter|K+-importing ATPase activity|ATPase-coupled potassium transmembrane transporter activity|ATP phosphohydrolase (K+-importing)|ATP-dependent potassium transmembrane transporter activity|potassium-uptake-ATPase activity|K(+)-importing ATPase activity|potassium-transporting ATPase activity|potassium-importing ATPase activity|potassium transporting ATPase activity EC:7.2.2.6|RHEA:16777 GO:0015618 molecular_function owl:Class GO:0010201 biolink:NamedThing response to continuous far red light stimulus by the high-irradiance response system Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018655 biolink:NamedThing 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA 1,2-monooxygenase activity Catalysis of the reaction: 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA + NADH + H+ + O2 = NAD+ + H2O + delta2,5-3,4,4-trimethylpimelyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0430 molecular_function owl:Class GO:0090417 biolink:NamedThing N-methylnicotinate transmembrane transporter activity Enables the transfer of N-methylnicotinate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl N-methylnicotinate transporter activity tb 2011-10-19T11:09:59Z molecular_function owl:Class GO:0071037 biolink:NamedThing nuclear polyadenylation-dependent snRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nuclear RNA (snRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent snRNA catabolic process krc 2009-07-29T01:07:18Z biological_process owl:Class GO:0032772 biolink:NamedThing negative regulation of tyrosinase activity Any process that stops or reduces the activity of a tyrosinase enzyme. tmpzr1t_l9r_go_relaxed.owl down regulation of monophenol oxygenase activity|down-regulation of monophenol oxygenase activity|negative regulation of monophenol oxygenase activity|downregulation of monophenol oxygenase activity|inhibition of monophenol oxygenase activity|negative regulation of monophenol monooxygenase activity https://github.com/geneontology/go-ontology/issues/21024 biological_process owl:Class GO:1905271 biolink:NamedThing regulation of proton-transporting ATP synthase activity, rotational mechanism Any process that modulates the frequency, rate or extent of proton-transporting ATP synthase activity, rotational mechanism. tmpzr1t_l9r_go_relaxed.owl regulation of hydrogen ion translocating F-type ATPase activity|regulation of hydrogen ion transporting two-sector ATPase activity|regulation of H+-transporting ATP synthase activity|regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism als 2016-06-16T12:09:49Z biological_process owl:Class GO:0030560 biolink:NamedThing tRNA pseudouridylation guide activity Specifies the site of pseudouridylation in a tRNA molecule by base pairing with a short sequence around the target residue. tmpzr1t_l9r_go_relaxed.owl Note that this term describes the activity of a nucleic acid, usually RNA, gene product that interacts with other RNA molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0018189 biolink:NamedThing pyrroloquinoline quinone biosynthetic process The chemical reactions and pathways resulting in the formation of the cofactor pyrroloquinoline quinone (PQQ); it is synthesized from a small peptide containing tyrosine and glutamic acid; these amino acids in the peptide are multiply cross-linked and the rest of the peptide is removed. tmpzr1t_l9r_go_relaxed.owl coenzyme pyrroloquinoline-quinone biosynthetic process|pyrroloquinoline-quinone biosynthesis|pyrroloquinoline quinone synthesis|PQQ biosynthesis|coenzyme pyrroloquinoline-quinone biosynthesis|PQQ biosynthetic process|pyrroloquinoline quinone anabolism|pyrroloquinoline quinone formation|pyrroloquinoline quinone biosynthesis|pyrroloquinoline-quinone biosynthetic process https://github.com/geneontology/go-ontology/issues/20547 RESID:AA0283 biological_process owl:Class GO:0042292 biolink:NamedThing URM1 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier URM1, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061862 biolink:NamedThing cellular response to differentiation-inducing factor 2 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one|cellular response to DIF2|cellular response to DIF-2 dph 2017-04-07T17:14:16Z biological_process owl:Class GO:0006772 biolink:NamedThing thiamine metabolic process The chemical reactions and pathways involving thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl thiamin metabolic process|vitamin B1 metabolism|thiamin metabolism|vitamin B1 metabolic process|thiamine metabolism Wikipedia:Thiamine biological_process owl:Class GO:0018076 biolink:NamedThing N-terminal peptidyl-lysine acetylation The acetylation of the N-terminal lysine of proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033418 biolink:NamedThing CUC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CUC codon. tmpzr1t_l9r_go_relaxed.owl leucine tRNA|CTC codon-amino acid adaptor activity Note that in the standard genetic code, CTC codes for leucine. molecular_function owl:Class GO:0097313 biolink:NamedThing bacterial biofilm matrix surface The external part of the biofilm matrix, a structure lying external to bacterial cells. A biofilm is an aggregate of surface-associated bacteria, and the biofilm matrix is the envelope of polymeric substances that surrounds the bacteria. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-24T11:25:47Z cellular_component owl:Class GO:0042600 biolink:NamedThing egg chorion A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish. tmpzr1t_l9r_go_relaxed.owl Note that this term does not refer to the extraembryonic membrane surrounding the embryo of amniote vertebrates as this is an anatomical structure and is therefore not covered by GO. cellular_component owl:Class GO:0030312 biolink:NamedThing external encapsulating structure A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space. tmpzr1t_l9r_go_relaxed.owl The outer membrane (of gram negative bacteria) or cell wall (of yeast or Gram positive bacteria) are defined as parts of this structure, see 'external encapsulating structure part'. cellular_component owl:Class GO:0008741 biolink:NamedThing ribulokinase activity Catalysis of the reaction: ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl ribulokinase (phosphorylating)|ATP:L(or D)-ribulose 5-phosphotransferase activity|L-ribulokinase activity MetaCyc:RIBULOKIN-RXN|EC:2.7.1.16|RHEA:22072 molecular_function owl:Class GO:0102207 biolink:NamedThing docosanoate omega-hydroxylase activity Catalysis of the reaction: docosanoate + O2 + reduced [NADPH--hemoprotein reductase] = 22-hydroxydocosanoate + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl behenate omega-hydroxylase activity https://github.com/geneontology/go-ontology/issues/19925 RHEA:40079|MetaCyc:RXN-12155 molecular_function owl:Class GO:0120250 biolink:NamedThing fatty acid omega-hydroxylase activity Catalysis of the reaction: an omega-methyl fatty acid + O2 + reduced [NADPH--hemoprotein reductase] = an omega-hydroxy fatty acid + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19899 RHEA:39023 krc 2020-09-01T00:19:13Z molecular_function owl:Class GO:1901252 biolink:NamedThing regulation of intracellular transport of viral material Any process that modulates the frequency, rate or extent of egress of virus within host cell. tmpzr1t_l9r_go_relaxed.owl regulation of egress of virus within host cell|regulation of movement of virus within host cell|regulation of viral egress ss 2012-08-09T05:45:25Z biological_process owl:Class GO:1990657 biolink:NamedThing iNOS-S100A8/A9 complex A protein complex capable of stimulus-inducible nitric-oxide synthase activity. S-nitrosylates cysteine residues in target proteins, a principal mechanism of nitric oxide (NO)-mediated signal transduction. In mammals consists of NOS2, S100A8 and S100A9. S100A9 acts both as an adaptor linking NOS2 to its target and as a transnitrosylase that transfers the nitric oxide moiety from NOS2 to its target, via its own S-nitrosylated cysteine. tmpzr1t_l9r_go_relaxed.owl An example of this is NOS2 in human (UniProt symbol P35228) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T11:00:49Z cellular_component owl:Class GO:1903958 biolink:NamedThing nitric-oxide synthase complex A protein complex which is capable of nitric-oxide synthase activity. tmpzr1t_l9r_go_relaxed.owl iNOS-S100A8/A9 complex An example of this is NOS2 in human (P35228) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T10:45:01Z cellular_component owl:Class GO:0005096 biolink:NamedThing GTPase activator activity Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. tmpzr1t_l9r_go_relaxed.owl Rho GTPase activator activity|Rap GTPase activator activity|Ran GAP activity|Rac GTPase activator activity|Ras GAP activity|Sar GTPase activator activity|Rac GAP activity|Sar GAP activity|ARF GTPase activator activity|GAP activity|Ral GTPase activator activity|Ran GTPase activator activity|Rho GAP activity|Rab GAP activity|Ral GAP activity|Rap GAP activity|ARF GAP activity|RanGAP|Rab GTPase activator activity|Ras GTPase activator activity Reactome:R-HSA-416546|Reactome:R-HSA-416559|Reactome:R-HSA-428533|Reactome:R-HSA-4093339|Reactome:R-HSA-9624893|Reactome:R-HSA-392513|Reactome:R-HSA-399935|Reactome:R-HSA-5638007|Reactome:R-HSA-194922|Reactome:R-HSA-428522|Reactome:R-HSA-8985594 Note that the name Sar derives from 'secretion-associated, Ras-related'. GO:0005100|GO:0005101|GO:0008060|GO:0046582|GO:0005097|GO:0030675|GO:0005099|GO:0005098|GO:0017123 molecular_function owl:Class GO:0046085 biolink:NamedThing adenosine metabolic process The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. tmpzr1t_l9r_go_relaxed.owl adenosine metabolism biological_process owl:Class GO:0008273 biolink:NamedThing calcium, potassium:sodium antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + K+(in) + Na+(out) = Ca2+(out) + K+(out) + Na+(in). tmpzr1t_l9r_go_relaxed.owl potassium-dependent sodium/calcium exchanger Reactome:R-HSA-2514891|Reactome:R-HSA-5626316|Reactome:R-HSA-5626356|Reactome:R-HSA-5626270|Reactome:R-HSA-5625841|Reactome:R-HSA-425678 molecular_function owl:Class GO:0022821 biolink:NamedThing potassium ion antiporter activity Catalysis of the active transport of a potassium ion across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098938 biolink:NamedThing actin cytoskeleton of dendritic spine The actin cytoskeleton that is part of a dendritic spine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015720 biolink:NamedThing allantoin transport The directed movement of allantoin, (2,5-dioxo-4-imidazolidinyl)urea, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl allantoin/allantoate transport|allantoin transmembrane transport biological_process owl:Class GO:0003156 biolink:NamedThing regulation of animal organ formation Any process that modulates the rate, frequency or extent of animal organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-30T11:21:09Z biological_process owl:Class GO:0051080 biolink:NamedThing meiosis II nuclear membrane disassembly The controlled breakdown of the nuclear membranes during the second division of meiosis. tmpzr1t_l9r_go_relaxed.owl meiosis II nuclear envelope disassembly|meiosis II nuclear envelope degradation|meiosis II nuclear envelope catabolism|meiosis II nuclear envelope breakdown biological_process owl:Class GO:0061660 biolink:NamedThing Atg12 ligase activity Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S --> X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T13:50:42Z molecular_function owl:Class GO:0019777 biolink:NamedThing Atg12 transferase activity Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y --> Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl Atg12 conjugating enzyme activity|APG12 conjugating enzyme activity|APG12 ligase activity|Atg12 ligase activity Reactome:R-HSA-5681999 molecular_function owl:Class GO:0010361 biolink:NamedThing regulation of anion channel activity by blue light Any process in which blue light modulates the frequency, rate or extent of anion channel activity. tmpzr1t_l9r_go_relaxed.owl regulation by blue light of anion channel activity biological_process owl:Class GO:0052667 biolink:NamedThing phosphomethylethanolamine N-methyltransferase activity Catalysis of the reaction: N-methylethanolamine phosphate + S-adenosyl-L-methionine = N,N-dimethylethanolamine phosphate + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:methylethanolamine phosphate N-methyltransferase activity|N-methylethanolamine phosphate N-methyltransferase activity KEGG_REACTION:R06868|RHEA:25321|MetaCyc:RXN-5642|EC:2.1.1.103 ai 2011-04-11T11:36:47Z molecular_function owl:Class GO:0106148 biolink:NamedThing 4-hydroxyindole-3- carbonyl nitrile biosynthesis The chemical reactions and pathways resulting in the formation of 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic glucoside. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-10T19:42:16Z biological_process owl:Class GO:0102788 biolink:NamedThing 4-coumaroyl-CoA:pelargonidin-3-O-beta-D-glucoside-6''-O-acyltransferase activity Catalysis of the reaction: 4-coumaryl-CoA + pelargonidin 3-O-beta-D-glucoside = pelargonidin 3-O-beta-D-p-coumaroylglucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7998 molecular_function owl:Class GO:0006625 biolink:NamedThing protein targeting to peroxisome The process of directing proteins towards the peroxisome, usually using signals contained within the protein. tmpzr1t_l9r_go_relaxed.owl protein-peroxisome targeting biological_process owl:Class GO:0043574 biolink:NamedThing peroxisomal transport Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060267 biolink:NamedThing positive regulation of respiratory burst Any process that increases the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018029 biolink:NamedThing peptidyl-lysine palmitoylation The palmitoylation of peptidyl-lysine to form peptidyl-N6-palmitoyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0077 biological_process owl:Class GO:0048352 biolink:NamedThing paraxial mesoderm structural organization The process that contributes to the act of creating the structural organization of the paraxial mesoderm. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl paraxial mesoderm structural organisation biological_process owl:Class GO:0046625 biolink:NamedThing sphingolipid binding Binding to a sphingolipid, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902132 biolink:NamedThing (+)-lariciresinol biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-lariciresinol formation|(+)-lariciresinol biosynthesis|(+)-lariciresinol synthesis|(+)-lariciresinol anabolism ms 2013-05-21T08:49:59Z biological_process owl:Class GO:0071273 biolink:NamedThing morphine catabolic process The chemical reactions and pathways resulting in the breakdown of morphine, 17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol. Morphine is a highly potent opiate analgesic psychoactive drug obtained form the opium poppy, Papaver somniferum. tmpzr1t_l9r_go_relaxed.owl morphine degradation|morphine catabolism|morphine breakdown UniPathway:Q02198 mah 2009-12-10T11:16:28Z biological_process owl:Class GO:0102672 biolink:NamedThing fatty acid alpha-oxygenase activity Catalysis of the reaction: O2 + a 2,3,4-saturated fatty acid <=> a 2(R)-hydroperoxy fatty acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4121 molecular_function owl:Class GO:0046506 biolink:NamedThing sulfolipid biosynthetic process The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. tmpzr1t_l9r_go_relaxed.owl sulfolipid formation|sulfolipid synthesis|sulfolipid biosynthesis|sulpholipid biosynthetic process|sulpholipid biosynthesis|sulfolipid anabolism biological_process owl:Class GO:0015208 biolink:NamedThing guanine transmembrane transporter activity Enables the transfer of guanine, 2-amino-6-hydroxypurine, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900552 biolink:NamedThing asperfuranone metabolic process The chemical reactions and pathways involving asperfuranone. tmpzr1t_l9r_go_relaxed.owl asperfuranone metabolism di 2012-05-15T01:30:48Z biological_process owl:Class GO:0007545 biolink:NamedThing processes downstream of sex determination signal The sex determination processes that take place after the initial transmission of the sexual phenotype to specific information pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102868 biolink:NamedThing 24-epi-campsterol desaturase activity Catalysis of the reaction: 24-epi-campesterol + NADPH + H+ + O2 <=> brassicasterol + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8352 molecular_function owl:Class GO:1905175 biolink:NamedThing negative regulation of vascular associated smooth muscle cell dedifferentiation Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell dedifferentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of vascular smooth muscle cell dedifferentiation|negative regulation of vascular smooth muscle cell dedifferentiation|down regulation of vascular smooth muscle cell dedifferentiation|inhibition of vascular smooth muscle cell dedifferentiation|down-regulation of vascular smooth muscle cell dedifferentiation rph 2016-05-03T12:32:05Z biological_process owl:Class GO:0102309 biolink:NamedThing dTDP-4-oxo-2,6-dideoxy-D-glucose 4-ketoreductase (dTDP-D-oliose producing) activity Catalysis of the reaction: dTDP-D-oliose + NADP <=> dTDP-4-dehydro-2,6-dideoxy-D-glucose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12930 molecular_function owl:Class GO:0140453 biolink:NamedThing protein aggregate center Reversible aggregate of misfolded proteins and chaperones formed to shield thermosensitive proteins from degradation until conditions allow disaggregation and refolding. tmpzr1t_l9r_go_relaxed.owl protein aggregate centre|PAC https://github.com/geneontology/go-ontology/issues/19172 pg 2020-04-20T15:21:55Z cellular_component owl:Class GO:0015069 biolink:NamedThing scyllo-inosamine-4-phosphate amidinotransferase activity Catalysis of the reaction: 1-amino-1-deoxy-scyllo-inositol 4-phosphate + L-arginine = 1-guanidino-1-deoxy-scyllo-inositol 4-phosphate + L-ornithine. tmpzr1t_l9r_go_relaxed.owl inosamine-P amidinotransferase activity|inosamine-phosphate amidinotransferase activity|L-arginine:inosamine phosphate amidinotransferase activity|L-arginine:inosamine-P-amidinotransferase activity|L-arginine:1-amino-1-deoxy-scyllo-inositol-4-phosphate amidinotransferase activity RHEA:13265|EC:2.1.4.2|KEGG_REACTION:R03477|MetaCyc:2.1.4.2-RXN molecular_function owl:Class GO:0010235 biolink:NamedThing guard mother cell cytokinesis The stereotyped symmetric cell division by which guard mother cell give rise to stomatal guard cells. tmpzr1t_l9r_go_relaxed.owl guard mother cell division biological_process owl:Class GO:0042192 biolink:NamedThing methylmercury biosynthetic process The chemical reactions and pathways resulting in the formation of methylmercury (MeHg+), a highly toxic organometal. tmpzr1t_l9r_go_relaxed.owl methylmercury formation|methylmercury synthesis|methylmercury anabolism|methylmercury biosynthesis biological_process owl:Class GO:0046414 biolink:NamedThing organomercury biosynthetic process The chemical reactions and pathways resulting in the formation of organomercury compounds, any organic compound containing a mercury atom. tmpzr1t_l9r_go_relaxed.owl organomercury formation|organomercury biosynthesis|organomercury anabolism|organomercury synthesis biological_process owl:Class GO:0090434 biolink:NamedThing oleoyl-CoA ligase activity Catalysis of the reaction: ATP + oleic acid + CoA = AMP + diphosphate + oleoyl-CoA. tmpzr1t_l9r_go_relaxed.owl oleoyl-CoA synthetase activity tb 2012-07-25T03:31:31Z molecular_function owl:Class GO:0061698 biolink:NamedThing protein deglutarylation The removal of a glutaryl group (CO-CH2-CH2-CH2-CO) from a residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-07T11:02:31Z biological_process owl:Class GO:0042630 biolink:NamedThing behavioral response to water deprivation Any process that results in a change in the behavior of an organism as a result of deprivation of water. tmpzr1t_l9r_go_relaxed.owl behavioural response to water deprivation|behavioral response to thirst|behavioral response to drought biological_process owl:Class GO:0010514 biolink:NamedThing induction of conjugation with cellular fusion The process in which a cell initiates conjugation with cellular fusion. Conjugation with cellular fusion is the process that results in the union of cellular and genetic information from compatible mating types. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008946 biolink:NamedThing oligonucleotidase activity Catalysis of the exonucleolytic cleavage of oligonucleotides to yield nucleoside 5'-phosphates. tmpzr1t_l9r_go_relaxed.owl EC:3.1.13.3|MetaCyc:3.1.13.3-RXN Note that enzymes with this activity usually also hydrolyze NAD+ to NMN and AMP. molecular_function owl:Class GO:0050595 biolink:NamedThing 7-deoxyloganin 7-hydroxylase activity Catalysis of the reaction: 7-deoxyloganin + NADPH + H+ + O2 = loganin + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl 7-deoxyloganin,NADPH:oxygen oxidoreductase (7alpha-hydroxylating) RHEA:11452|MetaCyc:1.14.13.74-RXN|EC:1.14.13.74 molecular_function owl:Class GO:0021520 biolink:NamedThing spinal cord motor neuron cell fate specification The process in which a cell becomes capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048665 biolink:NamedThing neuron fate specification The process in which a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901783 biolink:NamedThing p-cumate biosynthetic process The chemical reactions and pathways resulting in the formation of p-cumate. tmpzr1t_l9r_go_relaxed.owl p-cumate synthesis|p-cumate anabolism|p-cumate biosynthesis|p-cumate formation yaf 2013-01-16T10:40:36Z biological_process owl:Class GO:0050103 biolink:NamedThing dextrin dextranase activity Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + 1,6-alpha-D-glucosyl(m) = 1,4-alpha-D-glucosyl(n-1) + 1,6-alpha-D-glucosyl(m+1). tmpzr1t_l9r_go_relaxed.owl dextran dextrinase activity|dextrin 6-glucosyltransferase activity|1,4-alpha-D-glucan:1,6-alpha-D-glucan 6-alpha-D-glucosyltransferase activity MetaCyc:DEXTRIN-DEXTRANASE-RXN|RHEA:14625|EC:2.4.1.2 molecular_function owl:Class GO:0097411 biolink:NamedThing hypoxia-inducible factor-1alpha signaling pathway A series of molecular signals mediated by hypoxia-inducible factor (HIF1) in response to lowered oxygen levels (hypoxia). Under hypoxic conditions, the oxygen-sensitive alpha-subunit of hypoxia-inducible factor (HIF)-1 dimerizes with a HIF1-beta subunit (also called ARNT or aryl-hydrocarbon-receptor nuclear translocator), translocates to the nucleus and activates transcription of genes whose products participate in responding to hypoxia. tmpzr1t_l9r_go_relaxed.owl hypoxia-inducible factor signaling|HIF1alpha pathway|hypoxia-inducible factor-1alpha signalling pathway pr 2012-11-06T10:46:33Z biological_process owl:Class GO:0050232 biolink:NamedThing putrescine oxidase activity Catalysis of the reaction: putrescine + O2 + H2O = 4-aminobutanal + NH3 + H2O2. tmpzr1t_l9r_go_relaxed.owl putrescine:oxygen oxidoreductase (deaminating) EC:1.4.3.10|MetaCyc:PUTRESCINE-OXIDASE-RXN|RHEA:18273 molecular_function owl:Class GO:1990670 biolink:NamedThing vesicle fusion with Golgi cis cisterna membrane The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi cis cisterna. This can involve anterograde or retrograde transport vesicles. tmpzr1t_l9r_go_relaxed.owl bhm 2015-03-02T11:25:19Z biological_process owl:Class GO:0140268 biolink:NamedThing endoplasmic reticulum-plasma membrane contact site A contact site between the endoplasmic reticulum membrane and the plasma membrane, structured by bridging complexes. tmpzr1t_l9r_go_relaxed.owl ER-plasma membrane contact site|EPCS|ER-PM contact site|endoplasmic reticulum-plasma membrane contact junction pg 2018-09-26T09:29:41Z cellular_component owl:Class GO:0021938 biolink:NamedThing smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened in cerebellar granule cells that contributes to the regulation of proliferation of the cells. tmpzr1t_l9r_go_relaxed.owl hh signaling pathway involved in regulation of granule cell precursor cell proliferation|smoothened signalling pathway in regulation of granule cell precursor cell proliferation|hedgehog signaling pathway involved in regulation of granule cell precursor cell proliferation biological_process owl:Class GO:0018267 biolink:NamedThing GPI anchor biosynthetic process via N-cysteinyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-cysteine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a cysteinyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor formation via N-cysteinyl-glycosylphosphatidylinositolethanolamine|GPI anchor synthesis via N-cysteinyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-cysteinyl-glycosylphosphatidylinositolethanolamine RESID:AA0160 biological_process owl:Class GO:0043024 biolink:NamedThing ribosomal small subunit binding Binding to a small ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102190 biolink:NamedThing 4alpha-formyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-formyl-5alpha-cholesta-7,24-dien-3beta-ol + O2 + NADH(2-) <=> 4alpha-carboxy-5alpha-cholesta-7,24-dien-3beta-ol + NAD(1-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11958 molecular_function owl:Class GO:0097067 biolink:NamedThing cellular response to thyroid hormone stimulus A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-14T05:02:47Z biological_process owl:Class GO:0140225 biolink:NamedThing DNA topoisomerase III-beta-TDRD3 complex A protein complex that has DNA topoisomerase type I and RNA topoisomerase activities. tmpzr1t_l9r_go_relaxed.owl Top3-beta-TDRD3 complex pg 2018-05-29T10:05:33Z cellular_component owl:Class GO:0003150 biolink:NamedThing muscular septum morphogenesis The process in which the muscular septum is generated and organized. The muscular septum is the lower part of the ventricular septum. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T07:53:28Z biological_process owl:Class GO:0007534 biolink:NamedThing gene conversion at mating-type locus The conversion of the mating-type locus from one allele to another resulting from the recombinational repair of a site-specific double-strand break at the mating-type locus with information from a silent donor sequence. There is no reciprocal exchange of information because the mating-type locus copies information from the donor sequence and the donor sequence remains unchanged. tmpzr1t_l9r_go_relaxed.owl gene conversion at mating-type locus, DNA repair synthesis|gene conversion at mating-type locus, DNA double-strand break processing|heteroduplex formation involved in gene conversion at mating-type locus|gene conversion at mating-type locus, termination of copy-synthesis|gene conversion at mating-type locus, DNA double-strand break formation|strand invasion involved in gene conversion at mating-type locus https://github.com/geneontology/go-ontology/issues/19999 GO:0010708|GO:0034636|GO:0000728|GO:0000734|GO:0031292|GO:0061500 biological_process owl:Class GO:1901958 biolink:NamedThing negative regulation of cutin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of cutin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cutin formation|down-regulation of cutin synthesis|down regulation of cutin biosynthesis|negative regulation of cutin biosynthesis|negative regulation of cutin synthesis|down-regulation of cutin formation|inhibition of cutin formation|inhibition of cutin biosynthesis|down regulation of cutin formation|down regulation of cutin anabolism|inhibition of cutin synthesis|down-regulation of cutin biosynthesis|downregulation of cutin synthesis|downregulation of cutin biosynthetic process|inhibition of cutin anabolism|down-regulation of cutin biosynthetic process|negative regulation of cutin anabolism|down regulation of cutin synthesis|downregulation of cutin formation|down regulation of cutin biosynthetic process|down-regulation of cutin anabolism|downregulation of cutin biosynthesis|downregulation of cutin anabolism|inhibition of cutin biosynthetic process tb 2013-02-19T19:06:10Z biological_process owl:Class GO:1901957 biolink:NamedThing regulation of cutin biosynthetic process Any process that modulates the frequency, rate or extent of cutin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cutin biosynthesis|regulation of cutin synthesis|regulation of cutin formation|regulation of cutin anabolism tb 2013-02-19T19:06:06Z biological_process owl:Class GO:0031221 biolink:NamedThing arabinan metabolic process The chemical reactions and pathways involving arabinan, a polysaccharide composed of arabinose residues. tmpzr1t_l9r_go_relaxed.owl arabinan metabolism biological_process owl:Class GO:0048841 biolink:NamedThing regulation of axon extension involved in axon guidance Any process that modulates the frequency, rate or extent of axon extension involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030516 biolink:NamedThing regulation of axon extension Any process that modulates the rate, direction or extent of axon extension. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035605 biolink:NamedThing peptidyl-cysteine S-nitrosylase activity Catalysis of the transfer of a nitric oxide (NO) group to a sulphur atom within a cysteine residue of a protein. tmpzr1t_l9r_go_relaxed.owl protein nitrosylase activity|S-nitrosylase activity This term should not be used to annotate the nitrosylating action of nitric oxide synthase (NOS) if the nitroso group is synthesized directly on the substrate. bf 2010-11-16T09:49:26Z molecular_function owl:Class GO:1900226 biolink:NamedThing negative regulation of NLRP3 inflammasome complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of NLRP3 inflammasome complex assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of NALP3 inflammasome complex assembly|downregulation of NLRP3 inflammasome complex assembly|down-regulation of NLRP3 inflammasome activation|negative regulation of NLRP3 inflammasome activation|down regulation of NLRP3 inflammasome activation|downregulation of NALP3 inflammasome complex assembly|down-regulation of NLRP3 inflammasome complex assembly|inhibition of NLRP3 inflammasome activation|inhibition of NALP3 inflammasome complex assembly|negative regulation of NALP3 inflammasome complex assembly|downregulation of NLRP3 inflammasome activation|down regulation of NLRP3 inflammasome complex assembly|down-regulation of NALP3 inflammasome complex assembly|inhibition of NLRP3 inflammasome complex assembly jl 2012-03-22T04:18:24Z biological_process owl:Class GO:0018489 biolink:NamedThing vanillate monooxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + vanillate = 3,4-dihydroxybenzoate + formaldehyde + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl vanillate:oxygen oxidoreductase (demethylating)|vanillate demethylase (aerobic) activity|vanillate demethylase activity|4-hydroxy-3-methoxybenzoate demethylase activity MetaCyc:RXN-2|MetaCyc:RXN-10891|RHEA:13021|EC:1.14.13.82|UM-BBD_reactionID:r0146|KEGG_REACTION:R05274 Note that this was EC:1.2.3.12. molecular_function owl:Class GO:0032451 biolink:NamedThing demethylase activity Catalysis of the removal of a methyl group from a substrate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990792 biolink:NamedThing cellular response to glial cell derived neurotrophic factor Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glial cell derived neurotrophic factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to astrocyte-derived trophic factor|cellular response to GDNF|cellular response to ATF sl 2015-07-06T15:27:38Z biological_process owl:Class GO:1990790 biolink:NamedThing response to glial cell derived neurotrophic factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glial cell derived neurotrophic factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to ATF|response to GDNF|response to astrocyte-derived trophic factor sl 2015-07-02T19:47:05Z biological_process owl:Class GO:1904938 biolink:NamedThing planar cell polarity pathway involved in axon guidance Any Wnt signaling pathway, planar cell polarity pathway that is involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl PCP pathway involved in axon growth cone guidance|Wnt receptor signalling pathway, planar cell polarity pathway involved in axon growth cone guidance|PCP pathway involved in axon pathfinding|Wnt signaling pathway, planar cell polarity pathway involved in axon growth cone guidance|Wnt-JNK signaling pathway involved in axon guidance|Wnt-PCP signaling pathway involved in axon guidance|planar cell polarity pathway involved in axon growth cone guidance|PCP pathway involved in axon guidance|Wnt receptor signaling pathway, planar cell polarity pathway involved in axon guidance|Wnt-activated signaling pathway, planar cell polarity pathway involved in axon chemotaxis|Wnt-JNK signaling pathway involved in axon chemotaxis|Wnt-PCP signaling pathway involved in axon growth cone guidance|Wnt receptor signaling pathway, planar cell polarity pathway involved in axon growth cone guidance|Wnt signaling pathway, planar cell polarity pathway involved in axon chemotaxis|Wnt-PCP signaling pathway involved in axon pathfinding|Wnt-activated signaling pathway, planar cell polarity pathway involved in axon guidance|non-canonical Wnt signaling pathway involved in axon guidance|planar cell polarity pathway involved in axon chemotaxis|planar cell polarity pathway involved in axon pathfinding|Wnt receptor signaling pathway, planar cell polarity pathway involved in axon chemotaxis|Wnt-activated signaling pathway, planar cell polarity pathway involved in axon pathfinding|Wnt receptor signaling pathway, planar cell polarity pathway involved in axon pathfinding|Wnt signaling pathway, planar cell polarity pathway involved in axon pathfinding|Wnt receptor signalling pathway, planar cell polarity pathway involved in axon chemotaxis|Wnt signaling pathway, planar cell polarity pathway involved in axon guidance|non-canonical Wnt signaling pathway involved in axon chemotaxis|Wnt-PCP signaling involved in axon guidance|Wnt receptor signalling pathway, planar cell polarity pathway involved in axon pathfinding|PCP pathway involved in axon chemotaxis|Wnt-JNK signaling pathway involved in axon pathfinding|non-canonical Wnt signaling pathway involved in axon growth cone guidance|Wnt-JNK signaling pathway involved in axon growth cone guidance|Wnt receptor signalling pathway, planar cell polarity pathway involved in axon guidance|Wnt-PCP signaling pathway involved in axon chemotaxis|non-canonical Wnt signaling pathway involved in axon pathfinding|Wnt-activated signaling pathway, planar cell polarity pathway involved in axon growth cone guidance bf 2016-02-02T14:46:26Z biological_process owl:Class GO:0031359 biolink:NamedThing integral component of chloroplast outer membrane The component of the chloroplast outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to chloroplast outer membrane cellular_component owl:Class GO:0007566 biolink:NamedThing embryo implantation Attachment of the blastocyst to the uterine lining. tmpzr1t_l9r_go_relaxed.owl blastocyst implantation biological_process owl:Class GO:0046789 biolink:NamedThing host cell surface receptor binding Binding to a receptor on the host cell surface. tmpzr1t_l9r_go_relaxed.owl cell surface antigen activity, host-interacting|cell surface receptor ligand molecular_function owl:Class GO:0070200 biolink:NamedThing establishment of protein localization to telomere The directed movement of a protein to a specific location in the telomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization to chromosome, telomeric region|establishment of protein localisation to telomere biological_process owl:Class GO:0072313 biolink:NamedThing metanephric glomerular epithelial cell development The process whose specific outcome is the progression of a metanephric glomerular epithelial cell over time, from its formation to the mature structure. Metanephric glomerular epithelial cells are specialized epithelial cells that form part of the metanephric glomerulus; there are two types, metanephric glomerular parietal epithelial cells and metanephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T06:57:26Z biological_process owl:Class GO:0072312 biolink:NamedThing metanephric glomerular epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a metanephric glomerular epithelial cell. Metanephric glomerular epithelial cells are specialized epithelial cells that form part of the metanephric glomerulus; there are two types, metanephric glomerular parietal epithelial cells and metanephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T06:54:15Z biological_process owl:Class GO:0000055 biolink:NamedThing ribosomal large subunit export from nucleus The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl ribosomal large subunit-nucleus export|ribosomal large subunit transport from nucleus to cytoplasm|60S ribosomal subunit export from nucleus|ribosomal large subunit export from cell nucleus|50S ribosomal subunit export from nucleus|ribosomal large subunit export out of nucleus GO:0000057 biological_process owl:Class GO:1902945 biolink:NamedThing metalloendopeptidase activity involved in amyloid precursor protein catabolic process Any metalloendopeptidase activity that is involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl metalloendoproteinase activity involved in APP catabolic process|metalloendopeptidase activity involved in APP catabolism|metalloendopeptidase activity involved in APP catabolic process|metalloendoprotease activity involved in amyloid precursor protein catabolic process|metalloendopeptidase activity involved in amyloid precursor protein catabolism|metalloendoprotease activity involved in APP catabolic process|metalloendoproteinase activity involved in amyloid precursor protein catabolism|metalloendopeptidase activity involved in amyloid precursor protein breakdown|metalloendoprotease activity involved in amyloid precursor protein catabolism|metalloendopeptidase activity involved in amyloid precursor protein degradation|metalloendoprotease activity involved in amyloid precursor protein degradation|metalloendoproteinase activity involved in amyloid precursor protein catabolic process|metalloendoprotease activity involved in amyloid precursor protein breakdown|metalloendoproteinase activity involved in amyloid precursor protein degradation|metalloendoproteinase activity involved in APP catabolism|metalloendoproteinase activity involved in amyloid precursor protein breakdown|metalloendoprotease activity involved in APP catabolism Reactome:R-HSA-9010034 sjp 2014-05-02T08:13:04Z molecular_function owl:Class GO:0042987 biolink:NamedThing amyloid precursor protein catabolic process The chemical reactions and pathways resulting in the breakdown of amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease. tmpzr1t_l9r_go_relaxed.owl amyloid precursor protein catabolism|APP catabolic process|amyloid precursor protein degradation|amyloid precursor protein breakdown|APP catabolism biological_process owl:Class GO:1904336 biolink:NamedThing negative regulation of ductus arteriosus closure Any process that stops, prevents or reduces the frequency, rate or extent of ductus arteriosus closure. tmpzr1t_l9r_go_relaxed.owl down regulation of ductus arteriosus closure|inhibition of ductus arteriosus closure|downregulation of ductus arteriosus closure|down-regulation of ductus arteriosus closure sl 2015-06-11T17:45:21Z biological_process owl:Class GO:0015918 biolink:NamedThing sterol transport The directed movement of sterols into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044496 biolink:NamedThing negative regulation of blood pressure in other organism A process by which one organism decreases the force with which blood travels through the circulatory system of another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T02:15:28Z biological_process owl:Class GO:0045588 biolink:NamedThing positive regulation of gamma-delta T cell differentiation Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of gamma-delta T cell development|upregulation of gamma-delta T cell differentiation|activation of gamma-delta T cell differentiation|positive regulation of gamma-delta T lymphocyte differentiation|positive regulation of gamma-delta T-cell differentiation|positive regulation of gamma-delta T-lymphocyte differentiation|up regulation of gamma-delta T cell differentiation|stimulation of gamma-delta T cell differentiation|up-regulation of gamma-delta T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0032613 biolink:NamedThing interleukin-10 production The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-10 biosynthetic process|interleukin-10 secretion|IL-10 production GO:0072608|GO:0042091 biological_process owl:Class GO:0072265 biolink:NamedThing metanephric capsule morphogenesis The process in which the anatomical structures of the metanephric capsule are generated and organized. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:54:49Z biological_process owl:Class GO:0072213 biolink:NamedThing metanephric capsule development The process whose specific outcome is the progression of the metanephric capsule over time, from its formation to the mature structure. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T01:25:19Z biological_process owl:Class GO:0070268 biolink:NamedThing cornification A type of programmed cell death that occurs in the epidermis, morphologically and biochemically distinct from apoptosis. It leads to the formation of corneocytes, i.e. dead keratinocytes containing an amalgam of specific proteins (e.g., keratin, loricrin, SPR and involucrin) and lipids (e.g., fatty acids and ceramides), which are necessary for the function of the cornified skin layer (mechanical resistance, elasticity, water repellence and structural stability). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061080 biolink:NamedThing right horn of sinus venosus development The progression of the right horn of the sinus venosus from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-08T02:45:10Z biological_process owl:Class GO:0000943 biolink:NamedThing retrotransposon nucleocapsid A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog. tmpzr1t_l9r_go_relaxed.owl Virus-like particle|VLP Wikipedia:Virus-like_particle cellular_component owl:Class GO:0009571 biolink:NamedThing proplastid stroma The space enclosed by the double membrane of a proplastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032529 biolink:NamedThing follicle cell microvillus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microvillus on a follicle cell. A microvillus is a thin cylindrical membrane-covered projection on the surface of an animal cell containing a core bundle of actin filaments. tmpzr1t_l9r_go_relaxed.owl follicle cell microvillus organization and biogenesis|follicle cell microvillus organisation biological_process owl:Class GO:0150035 biolink:NamedThing regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission Any process that modulates the frequency, rate or extent of trans-synaptic signaling by BDNF, modulating synaptic transmission. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. bc 2018-04-17T13:56:34Z biological_process owl:Class GO:0060047 biolink:NamedThing heart contraction The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body. tmpzr1t_l9r_go_relaxed.owl heart beating|cardiac contraction|hemolymph circulation biological_process owl:Class GO:1901044 biolink:NamedThing protein polyubiquitination involved in nucleus-associated proteasomal ubiquitin-dependent protein catabolic process Any protein polyubiquitination that is involved in nucleus-associated proteasomal ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl al 2012-06-26T10:59:04Z biological_process owl:Class GO:0060133 biolink:NamedThing somatotropin secreting cell development The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. tmpzr1t_l9r_go_relaxed.owl somatotrophin secreting cell development|somatotroph development|somatotropic cell development|somatotrope development|somatrophic cell development|growth hormone secreting cell development biological_process owl:Class GO:0043293 biolink:NamedThing apoptosome A multisubunit protein complex involved in the signaling phase of the apoptotic process. In mammals it is typically composed of seven Apaf-1 subunits bound to cytochrome c and caspase-9. A similar complex to promote apoptosis is formed from homologous gene products in other eukaryotic organisms. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Apoptosome cellular_component owl:Class GO:0007284 biolink:NamedThing spermatogonial cell division The mitotic divisions of the primary spermatogonial cell (a primordial male germ cell) to form secondary spermatogonia (primary spermatocytes). tmpzr1t_l9r_go_relaxed.owl spermatogonium division See also the Cell Ontology terms 'spermatogonium ; CL:0000020' and 'primary spermatocyte ; CL:0000656'. biological_process owl:Class GO:0060158 biolink:NamedThing phospholipase C-activating dopamine receptor signaling pathway The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signalling pathway|dopamine receptor, phospholipase C activating pathway biological_process owl:Class GO:2000246 biolink:NamedThing positive regulation of FtsZ-dependent cytokinesis Any process that activates or increases the frequency, rate or extent of Ftsz-dependent cytokinesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of prokaryotic fission|positive regulation of prokaryote-type cytokinesis mah 2010-11-10T02:46:41Z biological_process owl:Class GO:0006791 biolink:NamedThing sulfur utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary sulfur sources and then activates genes to scavenge the last traces of the primary sulfur source and to transport and metabolize alternate sulfur sources. The utilization process begins when the cell or organism detects sulfur levels, includes the activation of genes whose products detect, transport or metabolize sulfur-containing compounds, and ends when the sulfur is incorporated into the cell or organism's metabolism. tmpzr1t_l9r_go_relaxed.owl sulphur utilization biological_process owl:Class GO:0035941 biolink:NamedThing androstenedione secretion The regulated release of androstenedione (androst-4-ene-3,17-dione) into the circulatory system. tmpzr1t_l9r_go_relaxed.owl androst-4-ene-3,17-dione secretion bf 2011-07-25T02:11:47Z biological_process owl:Class GO:0045508 biolink:NamedThing interleukin-26 receptor activity Combining with interleukin-26 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-26R|IL-26 receptor activity molecular_function owl:Class GO:0045512 biolink:NamedThing interleukin-26 binding Binding to interleukin-26. tmpzr1t_l9r_go_relaxed.owl IL-26 binding molecular_function owl:Class GO:1990026 biolink:NamedThing hippocampal mossy fiber expansion Synaptic expansion of hippocampal mossy fiber axon that makes contact with the thorny excrescences of hippocampal CA3 pyramidal cell dendrites. tmpzr1t_l9r_go_relaxed.owl dentate gyrus granule cell axonal bouton|mossy fiber expansion|dentate gyrus mossy fiber expansion NIF_Subcellular:nlx_subcell_1005002 pr 2013-02-06T10:31:59Z cellular_component owl:Class GO:0097457 biolink:NamedThing hippocampal mossy fiber Axon of dentate gyrus granule cell projecting to hippocampal area CA3, characterized by expansions (mossy fiber expansions) giving the fibers a mossy appearance. These unmyelinated axons were first described by Ramon y Cajal. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_100312 pr 2012-12-19T16:51:57Z cellular_component owl:Class GO:1903972 biolink:NamedThing regulation of cellular response to macrophage colony-stimulating factor stimulus Any process that modulates the frequency, rate or extent of cellular response to macrophage colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to macrophage colony-stimulating factor|regulation of cellular response to M-CSF stimulus nc 2015-03-02T14:50:14Z biological_process owl:Class GO:0035182 biolink:NamedThing female germline ring canal outer rim An electron opaque backbone of the insect ovarian ring canal that is a part of or adjacent to the plasma membrane. The outer rim is established as the cleavage furrow is arrested, and contains F-actin, anillin, glycoproteins and at least one a protein with a high content of phosphorylated tyrosine residues. tmpzr1t_l9r_go_relaxed.owl germline ring canal outer rim|nurse cell ring canal outer rim|ovarian ring canal outer rim See also the fly_anatomy.ontology term 'outer nurse cell ring canal rim ; FBbt:00004882'. cellular_component owl:Class GO:1900587 biolink:NamedThing arugosin biosynthetic process The chemical reactions and pathways resulting in the formation of arugosin. tmpzr1t_l9r_go_relaxed.owl arugosin biosynthesis|arugosin formation|arugosin synthesis|arugosin anabolism di 2012-05-15T06:48:45Z biological_process owl:Class GO:0031028 biolink:NamedThing septation initiation signaling The series of molecular signals, mediated by the small GTPase Ras, that results in the initiation of contraction of the contractile ring, at the beginning of cytokinesis and cell division by septum formation. The pathway coordinates chromosome segregation with mitotic exit and cytokinesis. tmpzr1t_l9r_go_relaxed.owl septation initiation signaling cascade|SIN|septation initiation signalling|septation initiation network biological_process owl:Class GO:1904003 biolink:NamedThing negative regulation of sebum secreting cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of sebum secreting cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of sebocyte proliferation|downregulation of sebocyte proliferation|inhibition of sebocyte proliferation|down-regulation of sebum secreting cell proliferation|downregulation of sebum secreting cell proliferation|inhibition of sebum secreting cell proliferation|down regulation of sebocyte proliferation|down-regulation of sebocyte proliferation|down regulation of sebum secreting cell proliferation hjd 2015-03-06T16:19:50Z biological_process owl:Class GO:0097211 biolink:NamedThing cellular response to gonadotropin-releasing hormone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin-releasing hormone stimulus. Gonadotropin-releasing hormone (GnRH) is a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl cellular response to GnRH|cellular response to gonadotrophin-releasing hormone pr 2012-01-09T08:51:23Z biological_process owl:Class GO:0071002 biolink:NamedThing U4atac/U6atac snRNP A ribonucleoprotein complex that contains the extensively base paired small nuclear RNAs U4atac and U6atac, a heptameric ring of Sm proteins associated with U4atac, the Lsm2-8 heptameric ring complex associated with U6atac, as well as several proteins that are unique to the U4atac snRNP or U6atac snRNPs, some of which remain associated with the U4atac/U6atac snRNA both while the U4atac snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005690 biolink:NamedThing U4atac snRNP A ribonucleoprotein complex that contains small nuclear RNA U4atac, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U4atac snRNP, most of which remain associated with the U4atac snRNA both while the U4atac snRNP is free or assembled into the U4atac/U6atac complex or into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U4atac cellular_component owl:Class GO:0034107 biolink:NamedThing negative regulation of erythrocyte clearance Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance. tmpzr1t_l9r_go_relaxed.owl negative regulation of red blood cell clearance|negative regulation of neocytolysis|negative regulation of RBC clearance biological_process owl:Class GO:0071673 biolink:NamedThing positive regulation of smooth muscle cell chemotaxis Any process that activates or increases the frequency, rate, or extent of smooth muscle cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl stimulation of smooth muscle cell chemotaxis|upregulation of smooth muscle cell chemotaxis|up regulation of smooth muscle cell chemotaxis|activation of smooth muscle cell chemotaxis|up-regulation of smooth muscle cell chemotaxis mah 2010-02-16T01:48:14Z biological_process owl:Class GO:0071670 biolink:NamedThing smooth muscle cell chemotaxis The directed movement of a smooth muscle cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-16T01:32:59Z biological_process owl:Class GO:1900151 biolink:NamedThing regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Any process that modulates the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA catabolism, deadenylation-dependent|regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|regulation of mRNA degradation, deadenylation-dependent decay|regulation of mRNA catabolic process, deadenylation-dependent|regulation of mRNA catabolism, deadenylylation-dependent|regulation of deadenylation-dependent mRNA decay|regulation of mRNA breakdown, deadenylation-dependent decay|regulation of mRNA catabolic process, deadenylylation-dependent bf 2012-03-07T09:14:43Z biological_process owl:Class GO:0072228 biolink:NamedThing metanephric prebend segment development The process whose specific outcome is the progression of the metanephric prebend segment over time, from its formation to the mature structure. The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:37:46Z biological_process owl:Class GO:0072220 biolink:NamedThing metanephric descending thin limb development The process whose specific outcome is the progression of the metanephric descending thin limb over time, from its formation to the mature structure. The metanephric descending thin limb is a part of the metanephric loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the metanephric loop of Henle. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:35:05Z biological_process owl:Class GO:0060171 biolink:NamedThing stereocilium membrane The portion of the plasma membrane surrounding a stereocilium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016078 biolink:NamedThing tRNA catabolic process The chemical reactions and pathways resulting in the breakdown of tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. tmpzr1t_l9r_go_relaxed.owl tRNA breakdown|tRNA degradation|tRNA catabolism biological_process owl:Class GO:1903640 biolink:NamedThing negative regulation of gastrin-induced gastric acid secretion Any process that stops, prevents or reduces the frequency, rate or extent of gastrin-induced gastric acid secretion. tmpzr1t_l9r_go_relaxed.owl inhibition of gastrin-induced gastric acid secretion|down-regulation of gastrin-induced gastric acid secretion|down regulation of gastrin-induced gastric acid secretion|downregulation of gastrin-induced gastric acid secretion sl 2014-11-20T20:54:28Z biological_process owl:Class GO:0001698 biolink:NamedThing gastrin-induced gastric acid secretion The regulated release of gastric acid induced by the interaction of gastrin with its receptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061084 biolink:NamedThing negative regulation of protein refolding Any process that decreases the rate, frequency, or extent of protein refolding. Protein refolding is the process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:11:29Z biological_process owl:Class GO:0042026 biolink:NamedThing protein refolding The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. tmpzr1t_l9r_go_relaxed.owl heat shock protein activity biological_process owl:Class GO:0080186 biolink:NamedThing developmental vegetative growth The increase in size or mass of non-reproductive plant parts. tmpzr1t_l9r_go_relaxed.owl dhl 2011-08-17T03:45:53Z biological_process owl:Class GO:0061989 biolink:NamedThing sperm karyosome formation The chromosome organization process in which meiotic chromosomes in the spem nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T21:29:47Z biological_process owl:Class GO:0097087 biolink:NamedThing interleukin-17A production The appearance of interleukin-17A due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-17A biosynthetic process|IL-17A production bc 2011-06-23T11:31:10Z GO:0150154 biological_process owl:Class GO:0080037 biolink:NamedThing negative regulation of cytokinin-activated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of cytokinin signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytokinin mediated signalling|negative regulation of cytokinin mediated signaling pathway biological_process owl:Class GO:1902985 biolink:NamedThing mitotic pre-replicative complex assembly Any pre-replicative complex assembly involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl nuclear pre-replicative complex assembly involved in mitotic cell cycle|pre-replicative complex assembly involved in mitotic cell cycle DNA replication jl 2014-05-06T20:33:34Z biological_process owl:Class GO:0044754 biolink:NamedThing autolysosome A type of secondary lysosome in which a primary lysosome has fused with the outer membrane of an autophagosome. It is involved in the second step of autophagy in which it degrades contents with acidic lysosomal hydrolases. tmpzr1t_l9r_go_relaxed.owl degrading autophagic vacuole|autophagolysosome|AVd NIF_Subcellular:sao8444068431 jl 2012-11-27T15:42:12Z cellular_component owl:Class GO:0060033 biolink:NamedThing anatomical structure regression The developmental process in which an anatomical stucture is destroyed as a part of its normal progression. tmpzr1t_l9r_go_relaxed.owl histolysis|tissue death biological_process owl:Class GO:0106186 biolink:NamedThing cytoplasmic side of plasma membrane, cell tip The leaflet the plasma membrane at the cell tip that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl hjd 2019-05-01T17:48:02Z cellular_component owl:Class GO:0050750 biolink:NamedThing low-density lipoprotein particle receptor binding Binding to a low-density lipoprotein receptor. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein receptor binding|LDL receptor binding molecular_function owl:Class GO:0004430 biolink:NamedThing 1-phosphatidylinositol 4-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = 1-phosphatidyl-1D-myo-inositol 4-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl PI4K-alpha activity|PI4-kinase activity|PtdIns-4-kinase activity|PI kinase activity|PI4K|PI 4-kinase activity|phosphatidylinositol kinase (phosphorylating) activity|type II phosphatidylinositol kinase activity|phosphatidylinositol kinase activity|phosphatidylinositol 4-kinase activity|ATP:1-phosphatidyl-1D-myo-inositol 4-phosphotransferase activity EC:2.7.1.67|KEGG_REACTION:R03361|Reactome:R-HSA-1675780|Reactome:R-HSA-1675813|MetaCyc:1-PHOSPHATIDYLINOSITOL-KINASE-RXN|RHEA:19877|Reactome:R-HSA-1675974|Reactome:R-HSA-1676185|Reactome:R-HSA-1675883 molecular_function owl:Class GO:0090369 biolink:NamedThing ornithine carbamoyltransferase inhibitor activity Binds to and stops, prevents, or reduces the activity of ornithine carbamoyltransferase. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:19:55Z molecular_function owl:Class GO:0001984 biolink:NamedThing artery vasodilation involved in baroreceptor response to increased systemic arterial blood pressure An increase in the internal diameter of an artery, triggered by vasomotor suppression, during the chemoreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure biological_process owl:Class GO:0097536 biolink:NamedThing thymus epithelium morphogenesis The process in which the thymus epithelium is generated and organized. tmpzr1t_l9r_go_relaxed.owl thymic epithelium morphogenesis pr 2013-11-28T10:51:03Z biological_process owl:Class GO:0009693 biolink:NamedThing ethylene biosynthetic process The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. tmpzr1t_l9r_go_relaxed.owl ethylene anabolism|ethene biosynthesis|ethylene biosynthesis|ethylene biosynthesis from L-methionine|ethylene biosynthetic process from L-methionine|ethylene formation|ethylene synthesis|ethene biosynthesis from L-methionine|ethene biosynthetic process|ethene biosynthetic process from L-methionine MetaCyc:ETHYL-PWY GO:0042456 biological_process owl:Class GO:1903915 biolink:NamedThing positive regulation of fusion of virus membrane with host plasma membrane Any process that activates or increases the frequency, rate or extent of fusion of virus membrane with host plasma membrane. tmpzr1t_l9r_go_relaxed.owl up regulation of viral entry into host cell via membrane fusion with the plasma membrane|activation of viral-cell fusion molecule activity|positive regulation of viral entry into host cell via membrane fusion with the plasma membrane|positive regulation of viral envelope fusion with host plasma membrane|up-regulation of viral envelope fusion with host membrane|up regulation of fusion of virus membrane with host plasma membrane|positive regulation of viral-cell fusion molecule activity|up-regulation of viral entry into host cell via membrane fusion with the plasma membrane|up regulation of viral envelope fusion with host plasma membrane|activation of viral envelope fusion with host cell membrane|up-regulation of viral envelope fusion with host cell membrane|positive regulation of viral envelope fusion with host cell membrane|activation of viral envelope fusion with host plasma membrane|up-regulation of fusion of virus membrane with host plasma membrane|up regulation of viral envelope fusion with host cell membrane|upregulation of viral envelope fusion with host plasma membrane|up-regulation of viral penetration via membrane fusion|activation of viral penetration via membrane fusion|activation of fusion of virus membrane with host plasma membrane|up regulation of viral envelope fusion with host membrane|up-regulation of viral-cell fusion molecule activity|upregulation of viral-cell fusion molecule activity|upregulation of fusion of virus membrane with host plasma membrane|upregulation of viral envelope fusion with host membrane|upregulation of viral entry into host cell via membrane fusion with the plasma membrane|positive regulation of viral envelope fusion with host membrane|up-regulation of viral envelope fusion with host plasma membrane|upregulation of viral penetration via membrane fusion|activation of viral envelope fusion with host membrane|positive regulation of viral penetration via membrane fusion|upregulation of viral envelope fusion with host cell membrane|up regulation of viral-cell fusion molecule activity|activation of viral entry into host cell via membrane fusion with the plasma membrane|up regulation of viral penetration via membrane fusion als 2015-02-09T11:13:41Z biological_process owl:Class GO:0035217 biolink:NamedThing labial disc development Progression of the labial imaginal disc over time, from its initial formation through to its metamorphosis to form adult structures including parts of the proboscis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048053 biolink:NamedThing R1/R6 development The process whose specific outcome is the progression of the R1 and R6 pair of photoreceptors in the eye over time, from their formation to the mature structures. R1 and R6 are paired photoreceptors that contribute to the outer rhabdomeres. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990793 biolink:NamedThing substance P secretion, neurotransmission The controlled release of substance P by a cell, in which the substance P acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T19:43:36Z biological_process owl:Class GO:0060241 biolink:NamedThing lysozyme inhibitor activity Binds to and stops, prevents or reduces the activity of lysozyme. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904836 biolink:NamedThing facioacoustic ganglion morphogenesis The developmental process by which an acoustico-facial VII-VIII ganglion complex is generated and organized. tmpzr1t_l9r_go_relaxed.owl acousticofacial ganglion morphogenesis|facio-acoustic ganglion morphogenesis|acoustico-facial VII-VIII ganglion complex morphogenesis|facio-acoustic ganglion complex VII-VIII morphogenesis|facio-acoustic VII-VIII ganglion complex morphogenesis|facio-acoustic ganglion complex morphogenesis bf 2015-12-01T17:02:06Z biological_process owl:Class GO:1903375 biolink:NamedThing facioacoustic ganglion development The process whose specific outcome is the progression of an acoustico-facial VII-VIII ganglion complex over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl facio-acoustic VII-VIII ganglion complex development|facio-acoustic ganglion development|acoustico-facial VII-VIII ganglion complex development|facio-acoustic ganglion complex VII-VIII development|acousticofacial ganglion development bf 2014-08-26T12:40:36Z biological_process owl:Class GO:0044646 biolink:NamedThing envenomation resulting in modulation of complement activation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of complement activation in other organism jl 2012-07-11T12:49:28Z biological_process owl:Class GO:0090543 biolink:NamedThing Flemming body A cell part that is the central region of the midbody characterized by a gap in alpha-tubulin staining. It is a dense structure of antiparallel microtubules from the central spindle in the middle of the intercellular bridge. tmpzr1t_l9r_go_relaxed.owl Midbody ring tb 2013-02-14T17:24:43Z cellular_component owl:Class GO:0030496 biolink:NamedThing midbody A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Midbody_(cell_biology) cellular_component owl:Class GO:0099064 biolink:NamedThing integral component of postsynaptic endosome membrane The component of the postsynaptic endosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072206 biolink:NamedThing metanephric juxtaglomerular apparatus development The process whose specific outcome is the progression of the juxtaglomerular apparatus in the metanephros over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T11:17:47Z biological_process owl:Class GO:1990956 biolink:NamedThing fibroblast chemotaxis The directed movement of a fibroblast guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). tmpzr1t_l9r_go_relaxed.owl dph 2016-06-02T19:54:19Z biological_process owl:Class GO:0021689 biolink:NamedThing cerebellar molecular layer structural organization The process that contributes to the act of creating the structural organization of the cerebellar molecular layer. This process pertains to the physical shaping of a rudimentary structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells. tmpzr1t_l9r_go_relaxed.owl cerebellar molecular layer structural organisation biological_process owl:Class GO:0032695 biolink:NamedThing negative regulation of interleukin-12 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-12 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of IL-12 production|down regulation of interleukin-12 production|inhibition of interleukin-12 production|negative regulation of interleukin-12 biosynthetic process|negative regulation of CLMF production|negative regulation of NKSF production|downregulation of interleukin-12 production|negative regulation of interleukin-12 secretion|down-regulation of interleukin-12 production GO:2001183|GO:0045083 biological_process owl:Class GO:0010516 biolink:NamedThing negative regulation of cellular response to nitrogen starvation Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070306 biolink:NamedThing lens fiber cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a lens fiber cell, any of the elongated, tightly packed cells that make up the bulk of the mature lens in the camera-type eye. The cytoplasm of a lens fiber cell is devoid of most intracellular organelles including the cell nucleus, and contains primarily crystallins, a group of water-soluble proteins expressed in vary large quantities. tmpzr1t_l9r_go_relaxed.owl lens fibre cell differentiation biological_process owl:Class GO:0001899 biolink:NamedThing negative regulation of cytolysis by symbiont of host cells Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by symbiont of cytolysis of host cells|down-regulation by symbiont of cytolysis of host cells|down regulation by symbiont of cytolysis of host cells|downregulation by symbiont of cytolysis of host cells|negative regulation by symbiont of cytolysis of host cells biological_process owl:Class GO:0007540 biolink:NamedThing sex determination, establishment of X:A ratio The developmental process in which an organism senses the number of X chromosomes and autosomes in its genomic complement and responds to it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007539 biolink:NamedThing primary sex determination, soma The transmission of information about sexual status from the initial, general, determination to signals specific to the soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033374 biolink:NamedThing protein localization to T cell secretory granule A process in which a protein is transported to, or maintained in, a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl protein localisation in T cell secretory granule|protein localization in T lymphocyte secretory granule|protein localization in T cell secretory granule|protein localization in T-lymphocyte secretory granule|protein localization in T-cell secretory granule biological_process owl:Class GO:0033371 biolink:NamedThing T cell secretory granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule in a T cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. tmpzr1t_l9r_go_relaxed.owl T cell secretory granule organisation|T-lymphocyte secretory granule maturation|T-cell secretory granule organization|T-lymphocyte secretory granule organization|T lymphocyte secretory granule organization|T cell secretory granule organization and biogenesis biological_process owl:Class GO:0000738 biolink:NamedThing DNA catabolic process, exonucleolytic The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. tmpzr1t_l9r_go_relaxed.owl DNA degradation, exonucleolytic|exonucleolytic degradation of DNA|DNA breakdown, exonucleolytic biological_process owl:Class GO:0043415 biolink:NamedThing positive regulation of skeletal muscle tissue regeneration Any process that activates or increase the rate of skeletal muscle regeneration. tmpzr1t_l9r_go_relaxed.owl activation of skeletal muscle regeneration|up regulation of skeletal muscle regeneration|stimulation of skeletal muscle regeneration|upregulation of skeletal muscle regeneration|up-regulation of skeletal muscle regeneration biological_process owl:Class GO:0046930 biolink:NamedThing pore complex A protein complex providing a discrete opening in a membrane that allows the passage of gases and/or liquids. tmpzr1t_l9r_go_relaxed.owl pore|channel-forming toxin activity|pore-forming toxin activity https://github.com/geneontology/go-ontology/issues/20452 cellular_component owl:Class GO:0099049 biolink:NamedThing clathrin coat assembly involved in endocytosis The process that results in the assembly of clathrin triskelia into a clathrin cage during endocytosis. Clathrin is recruited to the plasma membrane via interaction with scaffolding proteins that bridge between clathtin and cell surface receptors. Clathrin coat formation is concomittant with coated pit formation leading to endocytic vesicle formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060455 biolink:NamedThing negative regulation of gastric acid secretion Any process that decreases the rate frequency or extent of gastric secretion. Gastric secretion is the regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001696 biolink:NamedThing gastric acid secretion The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion. tmpzr1t_l9r_go_relaxed.owl hydrochloric acid secretion biological_process owl:Class GO:2000292 biolink:NamedThing regulation of defecation Any process that modulates the frequency, rate or extent of defecation. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-21T09:23:08Z biological_process owl:Class GO:0038090 biolink:NamedThing positive regulation of cell migration by VEGF-activated platelet derived growth factor receptor signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a platelet-derived growth factor receptor (PDGFR) on the surface of a cell, which activates or increases the frequency, rate or extent of the orderly movement of a cell from one site to another. tmpzr1t_l9r_go_relaxed.owl VEGF/PDGFR-induced cell migration|positive regulation of cell migration by VEGF-activated platelet derived growth factor receptor signalling pathway|positive regulation of cell migration by VEGF/PDGFR signaling pathway bf 2012-02-02T03:41:23Z biological_process owl:Class GO:0017055 biolink:NamedThing negative regulation of RNA polymerase II transcription preinitiation complex assembly Any process that stops, prevents, or reduces the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of RNA polymerase II transcriptional preinitiation complex assembly|down regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|downregulation of RNA polymerase II transcriptional preinitiation complex assembly|down-regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis|negative regulation of RNA polymerase II transcriptional pre-initiation complex assembly|negative regulation of RNA polymerase II transcriptional preinitiation complex formation biological_process owl:Class GO:0051123 biolink:NamedThing RNA polymerase II preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcriptional preinitiation complex assembly|RNA polymerase II transcriptional preinitiation complex formation|RNA polymerase II transcription PIC formation|RNA polymerase II transcription PIC biosynthesis biological_process owl:Class GO:0008406 biolink:NamedThing gonad development The process whose specific outcome is the progression of the gonad over time, from its formation to the mature structure. The gonad is an animal organ that produces gametes; in some species it also produces hormones. tmpzr1t_l9r_go_relaxed.owl gonadogenesis biological_process owl:Class GO:1990380 biolink:NamedThing Lys48-specific deubiquitinase activity Hydrolysis of Lys48-linked ubiquitin unit(s) from a ubiquitinated protein. tmpzr1t_l9r_go_relaxed.owl K48-specific deubiquitinase activity|K48-specific deubiquitinating activity Reactome:R-HSA-5690870 bf 2014-05-15T14:31:07Z molecular_function owl:Class GO:0046968 biolink:NamedThing peptide antigen transport The directed movement of a peptide antigen into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000916 biolink:NamedThing actomyosin contractile ring contraction The process of an actomyosin ring getting smaller in diameter, in the context of cytokinesis that takes place as part of a cell cycle. tmpzr1t_l9r_go_relaxed.owl cytokinesis, contractile ring contraction|contractile ring contraction involved in cell cycle cytokinesis|cytokinesis, actomyosin ring contraction|actomyosin contractile ring constriction https://github.com/geneontology/go-ontology/issues/21855 biological_process owl:Class GO:0016191 biolink:NamedThing synaptic vesicle uncoating The removal of the protein coat on a synaptic vesicle following the pinching step at the end of budding from the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle coat depolymerization|synaptic vesicle coat protein depolymerization biological_process owl:Class GO:0021714 biolink:NamedThing inferior olivary nucleus morphogenesis The process in which the anatomical structure of the inferior olivary nucleus is generated and organized. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements. tmpzr1t_l9r_go_relaxed.owl inferior olive morphogenesis biological_process owl:Class GO:0010215 biolink:NamedThing cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. tmpzr1t_l9r_go_relaxed.owl cellulose microfibril organisation biological_process owl:Class GO:0070977 biolink:NamedThing bone maturation A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-05T04:35:31Z biological_process owl:Class GO:0090172 biolink:NamedThing microtubule cytoskeleton organization involved in homologous chromosome segregation A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins that contributes to chromosomal pairing and precedes synapsis. tmpzr1t_l9r_go_relaxed.owl microtubule organization involved in chromosome pairing|microtubule cytoskeleton organisation involved in homologous chromosome segregation tb 2009-12-11T11:07:42Z biological_process owl:Class GO:0045143 biolink:NamedThing homologous chromosome segregation The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets. tmpzr1t_l9r_go_relaxed.owl meiosis I, chromosome segregation GO:0007061 biological_process owl:Class GO:0006655 biolink:NamedThing phosphatidylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. tmpzr1t_l9r_go_relaxed.owl phosphatidylglycerol anabolism|phosphatidylglycerol biosynthesis|phosphatidylglycerol synthesis|phosphatidylglycerol formation biological_process owl:Class GO:2001099 biolink:NamedThing maltotetraose transport The directed movement of a maltotetraoseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:15:03Z biological_process owl:Class GO:0007458 biolink:NamedThing progression of morphogenetic furrow involved in compound eye morphogenesis The morphogenetic furrow is a dorsoventral indentation which sweeps anteriorly across the eye disc. Ommatidia begin to form along the furrow, resulting in a graded series of ommatidial development across the anterior/posterior axis of the disc. tmpzr1t_l9r_go_relaxed.owl progression of morphogenetic furrow during compound eye morphogenesis biological_process owl:Class GO:0048755 biolink:NamedThing branching morphogenesis of a nerve The process in which the anatomical structures of branches in a nerve are generated and organized. This term refers to an anatomical structure (nerve) not a cell (neuron). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021807 biolink:NamedThing motogenic signaling initiating cell movement in cerebral cortex The interaction of soluble factors and receptors that result in the movement of cells in the primitive cerebral cortex. tmpzr1t_l9r_go_relaxed.owl motogenic signalling initiating cell movement in the cerebral cortex biological_process owl:Class GO:0021806 biolink:NamedThing initiation of movement involved in cerebral cortex radial glia guided migration The initial stages of cell motility involved in the glial-mediated movement of cells in the developing cerebral cortex. tmpzr1t_l9r_go_relaxed.owl initiation of movement involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:2000805 biolink:NamedThing negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled Any process that stops, prevents or reduces the frequency, rate or extent of termination of RNA polymerase II transcription, poly(A)-coupled. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription termination from Pol II promoter, RNA polymerase(A) coupled|negative regulation of termination of RNA polymerase II transcription, polyadenylation-coupled|negative regulation of transcription termination from Pol II promoter, poly(A) coupled pr 2011-07-04T08:41:34Z biological_process owl:Class GO:0030846 biolink:NamedThing termination of RNA polymerase II transcription, poly(A)-coupled The process in which transcription of polyadenylated RNA polymerase II transcripts is terminated; cleavage and polyadenylylation of the mRNA 3' end is coupled to transcription termination. tmpzr1t_l9r_go_relaxed.owl termination of RNA polymerase II transcription, polyadenylation-coupled|transcription termination from Pol II promoter, poly(A) coupled|transcription termination from Pol II promoter, RNA polymerase(A) coupled biological_process owl:Class GO:0060483 biolink:NamedThing lobar bronchus mesenchyme development The biological process whose specific outcome is the progression of a lobar bronchus mesenchyme from an initial condition to its mature state. This process begins with the formation of the lobar bronchus mesenchyme and ends with the mature structure. The lobar bronchus mesenchyme is the mass of tissue composed of mesenchymal cells in the lobar bronchus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060482 biolink:NamedThing lobar bronchus development The biological process whose specific outcome is the progression of a lobar bronchus from an initial condition to its mature state. This process begins with the formation of the lobar bronchus and ends with the mature structure. The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050852 biolink:NamedThing T cell receptor signaling pathway A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell. tmpzr1t_l9r_go_relaxed.owl TCR signaling pathway|T-lymphocyte receptor signalling pathway|T-cell receptor signalling pathway|T lymphocyte receptor signaling pathway|T lymphocyte receptor signalling pathway|T-cell receptor signaling pathway|T-lymphocyte receptor signaling pathway biological_process owl:Class GO:0098585 biolink:NamedThing host cell synaptic vesicle membrane The lipid bilayer surrounding a host synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl dos 2014-01-24T13:15:14Z cellular_component owl:Class GO:0098584 biolink:NamedThing host cell synaptic vesicle A secretory organelle of a host cell, some 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane. tmpzr1t_l9r_go_relaxed.owl dos 2014-01-24T13:14:13Z cellular_component owl:Class GO:0002536 biolink:NamedThing respiratory burst involved in inflammatory response A phase of elevated metabolic activity, during which oxygen consumption increases following a stimulus as part of an inflammatory response; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, resulting in an increase in their intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl respiratory burst involved in acute inflammatory response|oxidative burst during acute inflammatory response|production of reactive oxygen species during acute inflammatory response biological_process owl:Class GO:0030934 biolink:NamedThing anchoring collagen complex Any collagen complex which links one collagen assembly, such as a collagen fibril or sheet, to other structures. tmpzr1t_l9r_go_relaxed.owl connecting collagen|linking collagen cellular_component owl:Class GO:0005937 biolink:NamedThing mating projection The projection formed by unicellular fungi in response to mating pheromone. tmpzr1t_l9r_go_relaxed.owl conjugation tube|shmoo cellular_component owl:Class GO:0035676 biolink:NamedThing anterior lateral line neuromast hair cell development The process whose specific outcome is the progression of an anterior lateral line neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:03:57Z biological_process owl:Class GO:0003269 biolink:NamedThing BMP signaling pathway involved in regulation of secondary heart field cardioblast proliferation A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the modulation of the frequency, rate or extent of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl BMP signaling pathway involved in regulation of second heart field cardioblast proliferation|BMP signalling pathway involved in regulation of secondary heart field cardioblast proliferation dph 2009-10-15T02:45:28Z biological_process owl:Class GO:2001034 biolink:NamedThing positive regulation of double-strand break repair via nonhomologous end joining Any process that activates or increases the frequency, rate or extent of double-strand break repair via nonhomologous end joining. tmpzr1t_l9r_go_relaxed.owl positive regulation of NHEJ yaf 2011-08-24T09:25:51Z biological_process owl:Class GO:0075265 biolink:NamedThing positive regulation of oogonium development Any process that activates, maintains or increases the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050657 biolink:NamedThing nucleic acid transport The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006817 biolink:NamedThing phosphate ion transport The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl phosphate transport biological_process owl:Class GO:0090299 biolink:NamedThing regulation of neural crest formation Any process that modulates the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds. tmpzr1t_l9r_go_relaxed.owl tb 2010-03-12T04:08:26Z biological_process owl:Class GO:0010271 biolink:NamedThing regulation of chlorophyll catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of chlorophyll. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034992 biolink:NamedThing microtubule organizing center attachment site A region of the nuclear envelope to which a microtubule organizing center (MTOC) attaches; protein complexes embedded in the nuclear envelope mediate direct or indirect linkages between the microtubule cytoskeleton and the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl MTOC attachment site|MAS|microtubule organising centre attachment site Note that this term should not be confused with the cellular component term 'perinuclear region ; GO:0048471'. cellular_component owl:Class GO:0046548 biolink:NamedThing retinal rod cell development Development of a rod cell, one of the sensory cells in the eye that reacts to the presence of light. Rod cells contain the photopigment rhodopsin or porphyropsin and are responsible for vision in dim light. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060221 biolink:NamedThing retinal rod cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a retinal rod cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007465 biolink:NamedThing R7 cell fate commitment The process in which the R7 photoreceptor commits to its cell fate. The R7 receptor contributes the central part of the rhabdomere in the apical parts of the ommatidium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000718 biolink:NamedThing nucleotide-excision repair, DNA damage removal The removal of the oligonucleotide that contains the DNA damage. The oligonucleotide is formed by dual incisions that flank the site of DNA damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902455 biolink:NamedThing negative regulation of stem cell population maintenance Any process that stops, prevents or reduces the frequency, rate or extent of stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl downregulation of maintenance of pluripotency|down-regulation of stem cell maintenance|down regulation of maintenance of pluripotency|inhibition of stem cell maintenance|downregulation of stem cell maintenance|down regulation of stem cell maintenance|negative regulation of maintenance of pluripotency|inhibition of maintenance of pluripotency|down-regulation of maintenance of pluripotency cjm 2013-10-16T22:19:17Z biological_process owl:Class GO:0042014 biolink:NamedThing interleukin-19 receptor activity Combining with interleukin-19 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-19 receptor activity|IL-19R molecular_function owl:Class GO:0042013 biolink:NamedThing interleukin-19 binding Binding to interleukin-19. tmpzr1t_l9r_go_relaxed.owl IL-19 binding molecular_function owl:Class GO:0033101 biolink:NamedThing cellular bud membrane The portion of the plasma membrane surrounding a cellular bud. tmpzr1t_l9r_go_relaxed.owl cellular bud plasma membrane cellular_component owl:Class GO:0007443 biolink:NamedThing Malpighian tubule morphogenesis The process in which the anatomical structures of the Malpighian tubule are generated and organized. This process takes place entirely during the embryonic phase. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which leads into the posterior part of the gut. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'Malpighian tubule ; FBbt:00005786'. biological_process owl:Class GO:0033563 biolink:NamedThing dorsal/ventral axon guidance The process in which the migration of an axon growth cone is directed to a specific target site along the dorsal-ventral body axis in response to a combination of attractive and repulsive cues. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. tmpzr1t_l9r_go_relaxed.owl dorsal-ventral axon guidance|dorsal/ventral axon pathfinding|dorsoventral axon guidance biological_process owl:Class GO:0030085 biolink:NamedThing PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex A pigment protein complex that forms part of the photosystem II associated light-harvesting complex II; contains two proteins (usually about 28 and 27 kDa), and may contain a third; peripherally located relative to other LHC polypeptides. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009656 biolink:NamedThing PSII associated light-harvesting complex II, peripheral complex Pigment-protein complex primarily associated to PSII in plants, green algae and cyanobacteria. Involved in state transitions that cause migration to PSI under certain environmental conditions such as high light. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008384 biolink:NamedThing IkappaB kinase activity Catalysis of the reaction: ATP + IkappaB protein = ADP + IkappaB phosphoprotein. tmpzr1t_l9r_go_relaxed.owl IKBKA|inhibitor of NFkappaB kinase activity|TBK1|inhibitor of NF-kappaB kinase activity|IKBKB|STK12|IKK-1|CHUK|TANK-binding kinase 1 activity|IKK-2|ATP:IkappaB protein phosphotransferase activity|IKK Reactome:R-HSA-5684275|Reactome:R-HSA-5684267|RHEA:19073|MetaCyc:2.7.11.10-RXN|EC:2.7.11.10 Note that phosphorylation of IkappaB targets it for proteasomal degradation and allows the nuclear translocation of kB. molecular_function owl:Class GO:0007252 biolink:NamedThing I-kappaB phosphorylation The process of introducing a phosphate group into an inhibitor of kappa B (I-kappaB) protein. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing bound NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. tmpzr1t_l9r_go_relaxed.owl IkappaB phosphorylation|inhibitor of NF-kappaB phosphorylation|IKB phosphorylation|inhibitor of kappaB phosphorylation biological_process owl:Class GO:0001852 biolink:NamedThing complement component iC3b binding Binding to a iC3b product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061153 biolink:NamedThing trachea gland development The progression of a trachea gland over time, from its formation to the mature structure. Trachea glands are found under the mucus of the trachea and secrete mucus, and agents that help protect the lung from injury and infection. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-07T10:10:51Z biological_process owl:Class GO:0120074 biolink:NamedThing regulation of endocardial cushion cell differentiation Any process that modulates the frequency, rate or extent of cell differentiation, the process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cushion cell. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-26T23:32:00Z biological_process owl:Class GO:0014902 biolink:NamedThing myotube differentiation The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901439 biolink:NamedThing positive regulation of toluene metabolic process Any process that activates or increases the frequency, rate or extent of toluene metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of methylbenzene metabolic process|positive regulation of toluene metabolism|activation of toluene metabolic process|up regulation of toluene metabolism|up-regulation of toluene metabolism|up regulation of toluene metabolic process|activation of toluene metabolism|up-regulation of toluene metabolic process|upregulation of toluene metabolism|positive regulation of methylbenzene metabolic process|upregulation of methylbenzene metabolism|positive regulation of methylbenzene metabolism|up regulation of methylbenzene metabolism|up-regulation of methylbenzene metabolism|upregulation of toluene metabolic process|up regulation of methylbenzene metabolic process|up-regulation of methylbenzene metabolic process|activation of methylbenzene metabolism|upregulation of methylbenzene metabolic process tt 2012-10-01T21:19:08Z biological_process owl:Class GO:0120105 biolink:NamedThing mitotic actomyosin contractile ring, intermediate layer The region of the mitotic actomyosin ring in between the proximal layer and the actin filament layer. This region contains the accessory protein network, some actin filaments and connections between the proximal layer and the actin filament layer. tmpzr1t_l9r_go_relaxed.owl actomyosin contractile ring, intermediate layer krc 2017-10-11T22:54:40Z cellular_component owl:Class GO:0015245 biolink:NamedThing fatty acid transmembrane transporter activity Enables the transfer of fatty acids from one side of a membrane to the other. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. tmpzr1t_l9r_go_relaxed.owl peroxisomal fatty acyl transporter|fatty acid transporter activity|fatty acyl transporter activity|fatty-acyl group transporter activity Reactome:R-HSA-879585|Reactome:R-HSA-5627891 GO:0015246 molecular_function owl:Class GO:0015908 biolink:NamedThing fatty acid transport The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022000 biolink:NamedThing forebrain induction by the anterior neural ridge The close range interaction of the anterior neural ridge to the caudal region of the neural plate that specifies the forebrain fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061927 biolink:NamedThing TOC-TIC supercomplex I The protein transport macromolecular complex of the chloroplast membrane that interacts with the precursor proteins and contains components of both the outer membrane and inner membrane complexes containing at least Toc75, Toc159, Toc34 and Tic110. tmpzr1t_l9r_go_relaxed.owl dph 2017-08-28T13:18:20Z cellular_component owl:Class GO:1904448 biolink:NamedThing regulation of aspartate secretion Any process that modulates the frequency, rate or extent of aspartate secretion. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-07T20:56:57Z biological_process owl:Class GO:0089700 biolink:NamedThing protein kinase D signaling A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase D, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl protein kinase D signalling cascade|PKD signaling cascade|PKD signal transduction|protein kinase D signal transduction|protein kinase D signaling cascade biological_process owl:Class GO:0006703 biolink:NamedThing estrogen biosynthetic process The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants. tmpzr1t_l9r_go_relaxed.owl estrogen anabolism|oestrogen biosynthetic process|estrogen formation|oestrogen biosynthesis|estrogen biosynthesis|estrogen synthesis biological_process owl:Class GO:0035436 biolink:NamedThing triose phosphate transmembrane transport The process in which triose phosphate (glyceraldehyde 3-phosphate) is transported across a membrane. Glyceraldehyde 3-phosphate is any organic three carbon compound phosphate ester. tmpzr1t_l9r_go_relaxed.owl triose phosphate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-08T02:54:07Z biological_process owl:Class GO:0019080 biolink:NamedThing viral gene expression A process by which a viral gene is converted into a mature gene product or products (proteins or RNA). This includes viral transcription, processing to produce a mature RNA product, and viral translation. tmpzr1t_l9r_go_relaxed.owl viral genome expression biological_process owl:Class GO:0045270 biolink:NamedThing plasma membrane proton-transporting ATP synthase, central stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the plasma membrane-associated Fo proteins; rotates within the catalytic core during catalysis. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl proton-transporting ATP synthase, central stalk|hydrogen-transporting ATP synthase, central stalk cellular_component owl:Class GO:0045262 biolink:NamedThing plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) The catalytic sector of the plasma membrane hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the plasma membrane when the entire ATP synthase is assembled. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, F1 sector|proton-transporting ATP synthase complex, catalytic core F(1) See also the cellular component term 'plasma membrane ; GO:0005886'. cellular_component owl:Class GO:0009273 biolink:NamedThing peptidoglycan-based cell wall biogenesis The chemical reactions and pathways resulting in the formation of the peptidoglycan-based cell wall. An example of this process is found in Escherichia coli. tmpzr1t_l9r_go_relaxed.owl cell wall formation|cell wall assembly|cell wall anabolism|cell wall synthesis|cell wall biosynthetic process|cell envelope biosynthetic process|cell envelope biosynthesis biological_process owl:Class GO:0038178 biolink:NamedThing complement component C5a signaling pathway A series of molecular signals generated as a consequence of a the C5a component of the complement pathway binding to a complement receptor, and ending with regulation of a downstream cellular process. C5a is a peptide derived from the C5 complement factor. tmpzr1t_l9r_go_relaxed.owl complement component C5a-induced signaling pathway bf 2012-09-21T10:55:00Z biological_process owl:Class GO:0110160 biolink:NamedThing negative regulation of mitotic spindle formation (spindle phase one) Any process that stops, prevents or reduces the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase one). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:18:32Z biological_process owl:Class GO:1900670 biolink:NamedThing regulation of F-9775A biosynthetic process Any process that modulates the frequency, rate or extent of F-9775A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of F-9775A anabolism|regulation of F-9775A biosynthesis|regulation of F-9775A formation|regulation of F-9775A synthesis di 2012-05-22T04:24:09Z biological_process owl:Class GO:1900611 biolink:NamedThing F-9775A biosynthetic process The chemical reactions and pathways resulting in the formation of F-9775A. tmpzr1t_l9r_go_relaxed.owl F-9775A synthesis|F-9775A formation|F-9775A biosynthesis|F-9775A anabolism di 2012-05-15T07:02:56Z biological_process owl:Class GO:0106104 biolink:NamedThing regulation of glutamate receptor clustering Any process that modulates the frequency, rate or extent of glutamate receptor clustering. tmpzr1t_l9r_go_relaxed.owl hjd 2018-03-06T15:54:33Z biological_process owl:Class GO:0097688 biolink:NamedThing glutamate receptor clustering The neurotransmitter-gated ion channel clustering process in which glutamate receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl glutamatergic receptor clustering pr 2015-02-11T11:49:13Z biological_process owl:Class GO:0009524 biolink:NamedThing phragmoplast Fibrous structure (light microscope view) that arises between the daughter nuclei at telophase and within which the initial partition (cell plate), dividing the mother cell in two (cytokinesis), is formed. Appears at first as a spindle connected to the two nuclei, but later spreads laterally in the form of a ring. Consists of microtubules. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phragmoplast cellular_component owl:Class GO:1990916 biolink:NamedThing Isp3 layer of spore wall The outermost layers of the spore wall, as described in Schizosaccharomyces pombe. tmpzr1t_l9r_go_relaxed.owl al 2015-12-09T19:07:23Z cellular_component owl:Class GO:0002115 biolink:NamedThing store-operated calcium entry A calcium ion entry mechanism in the plasma membrane activated by the depletion of calcium ion from the internal calcium ion store in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl SOCE|store-operated calcium import|capacitative calcium entry|calcium ion import SOCE is initiated by response to stiumlation of membrane receptors leading to the hydrolysis ofphosphatidylinositol bisphosphate (PIP2), inositol 1,4,5-trisphosphate (IP3) generation, and IP3-mediated calcium ion release from the endoplasmic reticulum. biological_process owl:Class GO:0099699 biolink:NamedThing integral component of synaptic membrane The component of the synaptic membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-05-25T17:22:18Z cellular_component owl:Class GO:0000082 biolink:NamedThing G1/S transition of mitotic cell cycle The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070427 biolink:NamedThing nucleotide-binding oligomerization domain containing 1 signaling pathway Any series of molecular signals generated as a consequence of binding to nucleotide-binding oligomerization domain containing 1 (NOD1). tmpzr1t_l9r_go_relaxed.owl nucleotide-binding oligomerization domain containing 1 signalling pathway|NOD1 signaling pathway biological_process owl:Class GO:1903871 biolink:NamedThing DNA recombinase mediator complex assembly The aggregation, arrangement and bonding together of a set of components to form a DNA recombinase mediator complex. tmpzr1t_l9r_go_relaxed.owl DNA recombinase mediator complex formation rb 2015-02-05T23:05:10Z biological_process owl:Class GO:0034744 biolink:NamedThing APC-IQGAP1-Cdc42 complex A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Cdc42, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:1905000 biolink:NamedThing regulation of membrane repolarization during atrial cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of membrane repolarization during atrial cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl regulation of atrial repolarization|regulation of electrocardiogram QRS complex rph 2016-03-01T13:28:05Z biological_process owl:Class GO:0002819 biolink:NamedThing regulation of adaptive immune response Any process that modulates the frequency, rate, or extent of an adaptive immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061068 biolink:NamedThing urethra development The progression of the urethra over time from its initial formation to the mature structure. The urethra is a renal system organ that carries urine from the bladder to outside the body. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-12T08:24:52Z biological_process owl:Class GO:0030690 biolink:NamedThing Noc1p-Noc2p complex A heterodimer associated with 90S and 66S preribosomes. Predominantly, but not exclusively, nucleolar; involved in ribosomal large subunit biogenesis. tmpzr1t_l9r_go_relaxed.owl Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0043009 biolink:NamedThing chordate embryonic development The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120276 biolink:NamedThing regulation of cerebral blood circulation Any process that modulates the frequency, rate or extent of cerebral blood circulation. tmpzr1t_l9r_go_relaxed.owl regulation of cerebrum blood circulation|regulation of telencephalon blood circulation https://github.com/geneontology/go-ontology/issues/20107 krc 2020-10-21T06:52:22Z biological_process owl:Class GO:0120275 biolink:NamedThing cerebral blood circulation The flow of blood through the network of arteries and veins supplying the cerebrum, enabling the transport of nutrients to the tissues and the removal of waste products. tmpzr1t_l9r_go_relaxed.owl telencephelon blood circulation|cerebrum blood circulation https://github.com/geneontology/go-ontology/issues/20107 krc 2020-10-20T19:13:51Z biological_process owl:Class GO:0097577 biolink:NamedThing sequestering of iron ion The process of binding or confining iron ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl sequestration of iron ion|storage of iron ion|iron ion storage|iron ion sequestering|iron ion sequestration|retention of iron ion|iron ion retention pr 2014-02-28T11:10:53Z biological_process owl:Class GO:1905824 biolink:NamedThing positive regulation of mitotic sister chromatid arm separation Any process that activates or increases the frequency, rate or extent of mitotic sister chromatid arm separation. tmpzr1t_l9r_go_relaxed.owl activation of mitotic sister chromatid arm separation|up-regulation of mitotic sister chromatid arm separation|upregulation of mitotic sister chromatid arm separation|up regulation of mitotic sister chromatid arm separation als 2017-01-16T13:36:47Z biological_process owl:Class GO:0034314 biolink:NamedThing Arp2/3 complex-mediated actin nucleation The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. tmpzr1t_l9r_go_relaxed.owl branched actin filament nucleation|actin filament branch nucleation biological_process owl:Class GO:0010548 biolink:NamedThing regulation of thylakoid membrane disassembly Any process that modulates the frequency, rate or extent of thylakoid membrane disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of thylakoid membrane degradation biological_process owl:Class GO:2000472 biolink:NamedThing negative regulation of hematopoietic stem cell migration Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic stem cell migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of hemopoietic stem cell migration bf 2011-03-09T09:34:54Z biological_process owl:Class GO:0035701 biolink:NamedThing hematopoietic stem cell migration The orderly movement of a hematopoietic stem cell from one site to another. A hematopoietic stem cell is a cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. tmpzr1t_l9r_go_relaxed.owl hemopoietic stem cell migration bf 2011-02-28T03:20:36Z biological_process owl:Class GO:0002030 biolink:NamedThing inhibitory G protein-coupled receptor phosphorylation The process that inhibits the signaling function of a G protein-coupled receptor by addition of a phosphate group to its third intracellular loop consensus site. tmpzr1t_l9r_go_relaxed.owl inhibitory G-protein coupled receptor phosphorylation biological_process owl:Class GO:0003182 biolink:NamedThing coronary sinus valve morphogenesis The process in which the structure of the coronary sinus valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:33:31Z biological_process owl:Class GO:0003178 biolink:NamedThing coronary sinus valve development The progression of the valve of the coronary sinus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:21:43Z biological_process owl:Class GO:1901881 biolink:NamedThing positive regulation of protein depolymerization Any process that activates or increases the frequency, rate or extent of protein depolymerization. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein polymer catabolism|positive regulation of protein polymer catabolic process|up-regulation of protein polymer breakdown|upregulation of protein polymer catabolism|up-regulation of protein polymer degradation|activation of protein polymer breakdown|activation of protein polymer catabolism|activation of protein polymer degradation|up regulation of protein polymer catabolism|upregulation of protein depolymerization|upregulation of protein polymer degradation|upregulation of protein polymer breakdown|positive regulation of protein polymer breakdown|up regulation of protein polymer breakdown|upregulation of protein polymer catabolic process|up-regulation of protein polymer catabolic process|activation of protein polymer catabolic process|activation of protein depolymerization|positive regulation of protein polymer degradation|up regulation of protein polymer degradation|up regulation of protein polymer catabolic process|up-regulation of protein polymer catabolism|up-regulation of protein depolymerization|up regulation of protein depolymerization rl 2013-02-06T13:57:32Z biological_process owl:Class GO:0000468 biolink:NamedThing generation of mature 3'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in generating the mature 3'-end of an LSU-rRNA derived from a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl processing at B2 biological_process owl:Class GO:0000463 biolink:NamedThing maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098955 biolink:NamedThing intrinsic component of presynaptic endosome membrane The component of the presynaptic endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to presynaptic endosome membrane cellular_component owl:Class GO:0098954 biolink:NamedThing presynaptic endosome membrane The lipid bilayer surrounding a presynaptic endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005968 biolink:NamedThing Rab-protein geranylgeranyltransferase complex An protein-containing complex which catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein. In mammals it is composed of an alpha and a beta subunit, and associates with an accessory protein Rep (Rab escort protein). tmpzr1t_l9r_go_relaxed.owl GGTase-II complex|Rab geranylgeranyltransferase complex|RabGGTase complex cellular_component owl:Class GO:0032421 biolink:NamedThing stereocilium bundle A bundle of cross-linked stereocilia, arranged around a kinocilium on the apical surface of a sensory hair cell (e.g. a neuromast, auditory or vestibular hair cell). Stereocilium bundles act as mechanosensory organelles by responding to fluid motion or fluid pressure changes. tmpzr1t_l9r_go_relaxed.owl stereocilia bundle cellular_component owl:Class GO:0120061 biolink:NamedThing negative regulation of gastric emptying Any process that decreases the frequency, rate or extent of any gastric emptying process, the process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T21:54:49Z biological_process owl:Class GO:0021716 biolink:NamedThing inferior olivary nucleus structural organization The process that contributes to the act of creating the structural organization of the inferior olivary nucleus structure. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements. tmpzr1t_l9r_go_relaxed.owl inferior olivary nucleus structural organisation|inferior olive structural organization biological_process owl:Class GO:0021581 biolink:NamedThing medulla oblongata structural organization The process that contributes to the act of creating the structural organization of the medulla oblongata. This process pertains to the physical shaping of a rudimentary structure. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate. tmpzr1t_l9r_go_relaxed.owl medulla oblongata structural organisation|myelencephalon structural maturation|medulla structural maturation biological_process owl:Class GO:0062021 biolink:NamedThing mitotic cohesin dsDNA (leading strand) loading The protein localization to chromatin by which a cohesin ring complex is topologically linked to dsDNA (leading strand) as part of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-06T13:04:41Z biological_process owl:Class GO:0106126 biolink:NamedThing reservosome membrane The lipid bilayer surrounding a reservosome. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-03T18:01:26Z cellular_component owl:Class GO:0106123 biolink:NamedThing reservosome A large membrane-bound endocytic organelle present only in members of the Schizotrypanum subgenus of the Trypanosoma genus and is defined as the site of storage of endocytosed macromolecules and lysosomal enzymes. It is found at the posterior end of epimastigote forms of Trypanosoma cruzi, but absent in amastigotes and trypomastigotes. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-03T17:48:59Z cellular_component owl:Class GO:0032286 biolink:NamedThing central nervous system myelin maintenance The process in which the structure and material content of mature central nervous system myelin is kept in a functional state. tmpzr1t_l9r_go_relaxed.owl myelin maintenance in central nervous system biological_process owl:Class GO:1904794 biolink:NamedThing negative regulation of euchromatin binding Any process that stops, prevents or reduces the frequency, rate or extent of euchromatin binding. tmpzr1t_l9r_go_relaxed.owl inhibition of euchromatin binding|downregulation of euchromatin binding|down regulation of euchromatin binding|down-regulation of euchromatin binding nc 2015-11-09T11:43:12Z biological_process owl:Class GO:1990188 biolink:NamedThing euchromatin binding Binding to euchromatin, a dispersed and relatively uncompacted form of chromatin. tmpzr1t_l9r_go_relaxed.owl tb 2013-09-11T19:18:38Z molecular_function owl:Class GO:1900314 biolink:NamedThing positive regulation of maltohexaose transport Any process that activates or increases the frequency, rate or extent of maltohexaose transport. tmpzr1t_l9r_go_relaxed.owl upregulation of maltohexaose transport|up regulation of maltohexaose transport|up-regulation of maltohexaose transport|activation of maltohexaose transport tt 2012-04-05T07:59:35Z biological_process owl:Class GO:0061326 biolink:NamedThing renal tubule development The progression of the renal tubule over time from its formation to the mature form. A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T12:50:43Z biological_process owl:Class GO:0072045 biolink:NamedThing convergent extension involved in nephron morphogenesis The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:22:47Z biological_process owl:Class GO:0005946 biolink:NamedThing alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) A protein complex that possesses alpha,alpha-trehalose-phosphate synthase (UDP-forming) and trehalose-phosphatase activities, and thus catalyzes two reactions in trehalose biosynthesis. In the complex identified in Saccharomyces, Tps1p has alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, Tps2p has trehalose 6-phosphate phosphatase activity; Tps3p is a regulatory subunit, and an additional subunit, Tsl1p, may be present. tmpzr1t_l9r_go_relaxed.owl trehalose-6-phosphate synthase complex|trehalose-6-phosphate synthase/phosphatase|UDP-glucose-glucosephosphate glucosyltransferase complex See also the molecular function term 'alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity ; GO:0003825'. cellular_component owl:Class GO:0072037 biolink:NamedThing mesenchymal stem cell differentiation involved in nephron morphogenesis The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell that contributes to the shaping of a nephron. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:07:39Z biological_process owl:Class GO:0035712 biolink:NamedThing T-helper 2 cell activation The change in morphology and behavior of a T helper 2 cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl Th2 cell activation bf 2011-03-02T03:05:59Z biological_process owl:Class GO:0075288 biolink:NamedThing negative regulation of sporangiospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of sporangiospore formation, a process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000041 biolink:NamedThing negative regulation of planar cell polarity pathway involved in axis elongation Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in axis elongation. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-18T02:47:54Z biological_process owl:Class GO:1905216 biolink:NamedThing positive regulation of RNA binding Any process that activates or increases the frequency, rate or extent of RNA binding. tmpzr1t_l9r_go_relaxed.owl upregulation of RNA binding|up-regulation of RNA binding|activation of RNA binding|up regulation of RNA binding bf 2016-06-06T10:21:12Z biological_process owl:Class GO:0005898 biolink:NamedThing interleukin-13 receptor complex A protein complex that binds interleukin-13; consists of two chains, interleukin-13 receptor alpha1 chain and interleukin-4 receptor alpha chain. tmpzr1t_l9r_go_relaxed.owl IL-13 receptor complex cellular_component owl:Class GO:0055127 biolink:NamedThing vibrational conductance of sound to the inner ear The transmission of vibrations via ossicles to the inner ear. tmpzr1t_l9r_go_relaxed.owl jid 2009-10-13T10:59:39Z biological_process owl:Class GO:0007605 biolink:NamedThing sensory perception of sound The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound. tmpzr1t_l9r_go_relaxed.owl perception of sound|hearing Wikipedia:Hearing_(sense) biological_process owl:Class GO:0097048 biolink:NamedThing dendritic cell apoptotic process Any apoptotic process in a dendritic cell, a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. tmpzr1t_l9r_go_relaxed.owl dendritic cell apoptosis pr 2011-05-04T02:18:59Z biological_process owl:Class GO:0005793 biolink:NamedThing endoplasmic reticulum-Golgi intermediate compartment A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport. tmpzr1t_l9r_go_relaxed.owl VTC|vesicular-tubular cluster|EGTC|ER-Golgi transport container|ER-Golgi intermediate compartment|pre-Golgi intermediate compartment|endoplasmic reticulum-Golgi transport container|ERGIC Wikipedia:Vesicular-tubular_cluster cellular_component owl:Class GO:0061073 biolink:NamedThing ciliary body morphogenesis The process in which the ciliary body generated and organized. The ciliary body is the circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-16T10:55:19Z biological_process owl:Class GO:0046884 biolink:NamedThing follicle-stimulating hormone secretion The regulated release of follicle-stimulating hormone, a gonadotropic glycoprotein hormone secreted by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl follitropin secretion|follicle stimulating hormone secretion|FSH secretion biological_process owl:Class GO:0045647 biolink:NamedThing negative regulation of erythrocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of erythrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of erythrocyte differentiation|downregulation of erythrocyte differentiation|down regulation of erythrocyte differentiation|negative regulation of RBC differentiation|down-regulation of erythrocyte differentiation|negative regulation of red blood cell differentiation biological_process owl:Class GO:0032614 biolink:NamedThing interleukin-11 production The appearance of interleukin-11 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-11 production|interleukin-11 biosynthetic process|interleukin-11 secretion GO:0072609|GO:0042230 biological_process owl:Class GO:0001726 biolink:NamedThing ruffle Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork. tmpzr1t_l9r_go_relaxed.owl membrane ruffle cellular_component owl:Class GO:0034087 biolink:NamedThing establishment of mitotic sister chromatid cohesion The process in which the sister chromatids of a replicated chromosome become joined along the entire length of the chromosome during S phase during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031150 biolink:NamedThing sorocarp stalk development The process whose specific outcome is the progression of the sorocarp stalk over time, from its formation to the mature structure. The sorocarp stalk is a tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl stalk formation|sorophore development|stalk development biological_process owl:Class GO:0031154 biolink:NamedThing culmination involved in sorocarp development The process whose specific outcome is the progression of the culminant over time, from its formation to the mature structure. Culmination begins with a morphogenetic change of the finger-like or migratory slug giving rise to an organized structure containing a stalk and a sorus. This process is the final stage of sorocarp development. tmpzr1t_l9r_go_relaxed.owl culmination during fruiting body development|culminant development|culmination during sorocarp development biological_process owl:Class GO:0099588 biolink:NamedThing positive regulation of postsynaptic cytosolic calcium concentration Any process that increases the concentration of calcium ions in the postsynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044290 biolink:NamedThing mitochondrial intracristal space The space bounded by the mitochondrial cristae membranes, continuous with the intermembrane space. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao508958414 jl 2010-02-04T02:32:10Z cellular_component owl:Class GO:0002515 biolink:NamedThing B cell anergy Any process contributing to anergy in B cells, a state of functional inactivation which is part of B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl B-cell anergy|B-lymphocyte anergy|B lymphocyte anergy biological_process owl:Class GO:0072272 biolink:NamedThing proximal/distal pattern formation involved in metanephric nephron development The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis of a nephron in the metanephros. The proximal/distal axis is defined by a line that runs from the center of the kidney (proximal end) outward (distal end). tmpzr1t_l9r_go_relaxed.owl proximal/distal metanephric nephron patterning|proximal-distal pattern formation involved in metanephric nephron development mah 2010-03-30T03:25:37Z biological_process owl:Class GO:2000764 biolink:NamedThing positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis Any process that activates or increases the frequency, rate or extent of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of semaphorin-plexin signalling pathway involved in outflow tract morphogenesis vk 2011-06-18T04:26:00Z biological_process owl:Class GO:0071527 biolink:NamedThing semaphorin-plexin signaling pathway involved in outflow tract morphogenesis A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand that contributes to outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signalling pathway involved in outflow tract morphogenesis mah 2010-01-07T03:49:33Z biological_process owl:Class GO:1900048 biolink:NamedThing positive regulation of hemostasis Any process that activates or increases the frequency, rate or extent of hemostasis. tmpzr1t_l9r_go_relaxed.owl up-regulation of hemostasis|up regulation of hemostasis|activation of hemostasis|upregulation of hemostasis jl 2012-01-19T03:23:45Z biological_process owl:Class GO:0007599 biolink:NamedThing hemostasis The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Hemostasis biological_process owl:Class GO:0120213 biolink:NamedThing regulation of histidine biosynthetic process Any process that modulates the frequency, rate or extent of histidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of histidine formation|regulation of histidine biosynthesis|regulation of histidine synthesis|regulation of histidine anabolism krc 2019-06-27T20:55:42Z biological_process owl:Class GO:0000105 biolink:NamedThing histidine biosynthetic process The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl histidine formation|histidine biosynthesis|histidine anabolism|histidine synthesis MetaCyc:HISTSYN-PWY biological_process owl:Class GO:0009738 biolink:NamedThing abscisic acid-activated signaling pathway A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl abscisic acid signal transduction|ABA signal transduction|abscisic acid-mediated signaling pathway|abscisic acid mediated signalling|ABA signaling biological_process owl:Class GO:0010636 biolink:NamedThing positive regulation of mitochondrial fusion Any process that increases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008053 biolink:NamedThing mitochondrial fusion Merging of two or more mitochondria within a cell to form a single compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140691 biolink:NamedThing RNA folding chaperone Binding to an RNA or an RNA-containing complex to assist the folding process. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21913 pg 2021-08-04T07:48:29Z molecular_function owl:Class GO:0034337 biolink:NamedThing RNA folding The process of assisting in the covalent and noncovalent assembly of single or multimeric RNAs into the correct tertiary structure. tmpzr1t_l9r_go_relaxed.owl RNA chaperone biological_process owl:Class GO:1902315 biolink:NamedThing nuclear cell cycle DNA replication initiation Any DNA replication initiation that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA re-replication initiation involved in nuclear cell cycle DNA replication|DNA endoreduplication initiation involved in nuclear cell cycle DNA replication|DNA replication initiation involved in nuclear cell cycle DNA replication jl 2013-07-23T14:00:01Z biological_process owl:Class GO:0007393 biolink:NamedThing dorsal closure, leading edge cell fate determination The cell fate determination process in which a cell within the dorsal ectoderm becomes capable of differentiating autonomously into a leading edge cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022604 biolink:NamedThing regulation of cell morphogenesis Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell shape and cell size|regulation of cell shape and cell size|positive regulation of cell shape and cell size biological_process owl:Class GO:0032629 biolink:NamedThing interleukin-25 production The appearance of interleukin-25 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-25 formation|interleukin-25 biosynthetic process|interleukin-25 synthesis|interleukin-25 biosynthesis|IL-25 production|interleukin-25 anabolism|interleukin-25 secretion|IL-25 secretion|IL17E secretion GO:0072623|GO:0045525 biological_process owl:Class GO:1904372 biolink:NamedThing positive regulation of protein localization to actin cortical patch Any process that activates or increases the frequency, rate or extent of protein localization to actin cortical patch. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localisation to actin cortical patch|up regulation of protein localisation to actin cortical patch|upregulation of protein localisation to actin cortical patch|activation of protein localization to actin cortical patch|upregulation of protein localization to actin cortical patch|up regulation of protein localization to actin cortical patch|activation of protein localisation to actin cortical patch|up-regulation of protein localization to actin cortical patch|up-regulation of protein localisation to actin cortical patch sl 2015-06-18T22:23:43Z biological_process owl:Class GO:0019245 biolink:NamedThing D(-)-lactate biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of D(-)-lactate from other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl D(-)-lactate formation from pyruvate|D(-)-lactate anabolism from pyruvate|D(-)-lactate synthesis from pyruvate biological_process owl:Class GO:0031835 biolink:NamedThing substance P receptor binding Binding to a substance P receptor. tmpzr1t_l9r_go_relaxed.owl substance P receptor ligand|neurokinin-1 receptor binding molecular_function owl:Class GO:0060844 biolink:NamedThing arterial endothelial cell fate commitment The commitment of a cell to an arterial endothelial cell fate and its capacity to differentiate into an arterial endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:49:00Z biological_process owl:Class GO:0060842 biolink:NamedThing arterial endothelial cell differentiation The process in which a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:41:34Z biological_process owl:Class GO:0032822 biolink:NamedThing positive regulation of natural killer cell proliferation involved in immune response Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl up regulation of natural killer cell proliferation during immune response|up-regulation of natural killer cell proliferation during immune response|positive regulation of natural killer cell proliferation during immune response|positive regulation of NK cell proliferation during immune response|stimulation of natural killer cell proliferation during immune response|activation of natural killer cell proliferation during immune response|upregulation of natural killer cell proliferation during immune response biological_process owl:Class GO:0097197 biolink:NamedThing tetraspanin-enriched microdomain A pre-organized unit composed either of adhesion molecules (mainly integrins and members of the Ig superfamily), signaling receptors and/or enzyme-enriched plasma membrane domains that compartmentalizes cellular processes. Tetraspanin-enriched microdomains might be specially suited for the regulation of avidity of adhesion receptors and the compartmentalization of enzymatic activities. tmpzr1t_l9r_go_relaxed.owl TEM|membrane tetraspanin-enriched microdomain pr 2011-12-02T04:21:37Z cellular_component owl:Class GO:1901146 biolink:NamedThing mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis Any mesenchymal cell apoptotic process that is involved in mesonephric nephron morphogenesis. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-13T02:40:43Z biological_process owl:Class GO:0071012 biolink:NamedThing catalytic step 1 spliceosome A spliceosomal complex that is formed by the displacement of the two snRNPs from the precatalytic spliceosome; three snRNPs including U5 remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the associated snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal complex B*|yeast spliceosomal complex A1|activated spliceosome|mammalian spliceosomal complex B2 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0000974 biolink:NamedThing Prp19 complex A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p. tmpzr1t_l9r_go_relaxed.owl NTC|Prp19/CDC5 complex|nineteen complex krc 2009-10-12T10:01:30Z cellular_component owl:Class GO:0099579 biolink:NamedThing G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential A G protein-coupled neurotransmitter receptor activity, occurring in the postsynaptic membrane, involved in regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function owl:Class GO:0009577 biolink:NamedThing elaioplast stroma The space enclosed by the double membrane of an elaioplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009545 biolink:NamedThing elaioplast A leucoplast in which oil is stored. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Elaioplast cellular_component owl:Class GO:1902026 biolink:NamedThing regulation of cartilage condensation Any process that modulates the frequency, rate or extent of cartilage condensation. tmpzr1t_l9r_go_relaxed.owl jl 2013-03-28T17:02:42Z biological_process owl:Class GO:0001502 biolink:NamedThing cartilage condensation The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045751 biolink:NamedThing negative regulation of Toll signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the Tl signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of Toll signaling pathway|inhibition of Toll signaling pathway|down-regulation of Toll signaling pathway|negative regulation of Tl signalling pathway|down regulation of Toll signaling pathway|negative regulation of Tl signaling pathway biological_process owl:Class GO:0008063 biolink:NamedThing Toll signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Toll on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl Toll signalling pathway|Tl signalling pathway|Tl signaling pathway biological_process owl:Class GO:0021917 biolink:NamedThing somatic motor neuron fate commitment The commitment of unspecified motor neurons to specific motor neuron cell along the anterior-posterior axis of the spinal cord and their capacity to differentiate into specific motor neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021523 biolink:NamedThing somatic motor neuron differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of somatic motor neurons. Somatic motor neurons innervate skeletal muscle targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900157 biolink:NamedThing regulation of bone mineralization involved in bone maturation Any process that modulates the frequency, rate or extent of bone mineralization involved in bone maturation. tmpzr1t_l9r_go_relaxed.owl vk 2012-03-07T08:55:07Z biological_process owl:Class GO:0060035 biolink:NamedThing notochord cell development The process whose specific outcome is the progression of a notochord cell over time, from its formation to its mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090244 biolink:NamedThing Wnt signaling pathway involved in somitogenesis The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state that contributes to somitogenesis. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signaling pathway involved in somitogenesis|Wnt-activated signaling pathway involved in somitogenesis|Wnt receptor signalling tb 2010-01-22T10:47:59Z biological_process owl:Class GO:0034715 biolink:NamedThing pICln-Sm protein complex A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG. tmpzr1t_l9r_go_relaxed.owl 6S pICln complex cellular_component owl:Class GO:0072322 biolink:NamedThing protein transport across periplasmic space The directed movement of proteins from the plasma membrane across the periplasmic space to the outer membrane or cell wall. tmpzr1t_l9r_go_relaxed.owl chaperone-mediated protein transport across periplasmic space https://github.com/geneontology/go-ontology/issues/15917 mah 2010-10-28T04:24:59Z GO:0072323 biological_process owl:Class GO:1901432 biolink:NamedThing negative regulation of response to cycloalkane Any process that stops, prevents or reduces the frequency, rate or extent of response to cycloalkane. tmpzr1t_l9r_go_relaxed.owl downregulation of response to cycloalkane|down-regulation of response to cycloalkane|inhibition of response to cycloalkane|down regulation of response to cycloalkane tt 2012-10-01T21:03:08Z biological_process owl:Class GO:0042693 biolink:NamedThing muscle cell fate commitment The process in which the cellular identity of muscle cells is acquired and determined. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043928 biolink:NamedThing exonucleolytic catabolism of deadenylated mRNA The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048725 biolink:NamedThing cibarial fish-trap bristle development The process whose specific outcome is the progression of the cibarial fish-trap bristle over time, from its formation to the mature structure. A cibarial fish-trap bristle is a sensory bristle on the anterior plate of the cibarium. tmpzr1t_l9r_go_relaxed.owl fish-trap bristle development biological_process owl:Class GO:1900935 biolink:NamedThing regulation of nonadec-1-ene biosynthetic process Any process that modulates the frequency, rate or extent of nonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of nonadec-1-ene formation|regulation of nonadec-1-ene biosynthesis|regulation of nonadec-1-ene anabolism|regulation of nonadec-1-ene synthesis tt 2012-06-14T03:13:34Z biological_process owl:Class GO:0002176 biolink:NamedThing male germ cell proliferation The multiplication or reproduction of male germ cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl hjd 2010-11-18T02:35:14Z biological_process owl:Class GO:0039703 biolink:NamedThing RNA replication The cellular metabolic process in which a cell duplicates one or more molecules of RNA. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-21T16:53:29Z biological_process owl:Class GO:0003061 biolink:NamedThing positive regulation of the force of heart contraction by norepinephrine The process in which the secretion of norepinephrine into the bloodstream or released from nerve endings modulates the force of heart musclecontraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart contraction by norepinephrine|increased force of heart contraction by adrenaline|increased force of heart contraction by norepinephrine|noradrenaline regulation of the strength of heart muscle contraction|norepinephrine cardiac inotropy|noradrenaline cardiac inotropy|positive regulation of heart contraction by adrenaline biological_process owl:Class GO:0035670 biolink:NamedThing plant-type ovary development The process whose specific outcome is the progression of an ovary that produces an ovule over time, from its formation to the mature structure. The ovary is the enlarged basal portion of a carpel and matures into a fruit. An ovule is the multicellular structure that gives rise to and contains the female reproductive cells, and develops into a seed. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-04T09:35:05Z biological_process owl:Class GO:0001667 biolink:NamedThing ameboidal-type cell migration Cell migration that is accomplished by extension and retraction of a pseudopodium. tmpzr1t_l9r_go_relaxed.owl amoeboidal cell migration|amoeboid cell migration|ameboid cell migration Note that this term refers to a mode of migration rather than to any particular cell type. biological_process owl:Class GO:0060977 biolink:NamedThing coronary vasculature morphogenesis The process in which the anatomical structures of blood vessels of the heart are generated and organized. The blood vessel is the vasculature carrying blood. tmpzr1t_l9r_go_relaxed.owl cardiac blood vessel morphogenesis|heart vasculature morphogenesis|coronary blood vessel morphogenesis|cardiac vasculature morphogenesis|heart blood vessel morphogenesis dph 2009-10-06T12:28:23Z biological_process owl:Class GO:0031059 biolink:NamedThing histone deacetylation at centromere The removal of acetyl groups from histones in centromeric DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042689 biolink:NamedThing regulation of crystal cell differentiation Any process that modulates the frequency, rate or extent of crystal cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070120 biolink:NamedThing ciliary neurotrophic factor-mediated signaling pathway A series of molecular signals initiated by the binding of a ciliary neurotrophic factor (CNTF) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CNTF-mediated signaling pathway|ciliary neurotrophic factor-mediated signalling pathway biological_process owl:Class GO:1901620 biolink:NamedThing regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning Any process that modulates the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning. tmpzr1t_l9r_go_relaxed.owl regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning krc 2012-11-13T20:11:57Z biological_process owl:Class GO:0045431 biolink:NamedThing flavonol synthase activity Catalysis of the reaction: a dihydroflavonol + 2-oxoglurate + O2 = a flavonol + succinate + CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl flavonoid 2-oxoglutarate-dependent dioxygenase activity|FLS activity|dihydroflavonol,2-oxoglutarate:oxygen oxidoreductase activity EC:1.14.20.6|RHEA:21088 molecular_function owl:Class GO:0071008 biolink:NamedThing U2-type post-mRNA release spliceosomal complex A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and the U2, U5 and U6 snRNPs. tmpzr1t_l9r_go_relaxed.owl major post-mRNA release spliceosomal complex|U2/U5/U6 snRNP complex|U2/U5/U6 tri-snRNP complex|GT-AG post-mRNA release spliceosomal complex|mammalian U2-type spliceosomal complex I mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1904472 biolink:NamedThing positive regulation of endothelin production Any process that activates or increases the frequency, rate or extent of endothelin production. tmpzr1t_l9r_go_relaxed.owl up regulation of EDN1 secretion|upregulation of EDN3 secretion|up-regulation of endothelin secretion|up-regulation of EDN1 secretion|upregulation of EDN1 secretion|positive regulation of endothelin-3 secretion|upregulation of endothelin secretion|positive regulation of endothelin secretion|upregulation of endothelin-2 secretion|positive regulation of endothelin-2 secretion|activation of endothelin secretion|activation of EDN2 secretion|up-regulation of EDN2 secretion|activation of EDN3 secretion|positive regulation of EDN1 secretion|up regulation of endothelin-2 secretion|up regulation of EDN2 secretion|upregulation of endothelin-3 secretion|positive regulation of endothelin-1 secretion|up regulation of endothelin secretion|up-regulation of EDN3 secretion|up-regulation of endothelin-1 secretion|positive regulation of EDN3 secretion|up regulation of EDN3 secretion|up regulation of endothelin-3 secretion|up-regulation of endothelin-3 secretion|activation of EDN1 secretion|activation of endothelin-1 secretion|positive regulation of EDN2 secretion|activation of endothelin-2 secretion|activation of endothelin-3 secretion|upregulation of endothelin-1 secretion|upregulation of EDN2 secretion|up-regulation of endothelin-2 secretion|up regulation of endothelin-1 secretion sl 2015-07-09T19:58:10Z biological_process owl:Class GO:1990775 biolink:NamedThing endothelin production The appearance of a endothelin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Endothelins are endothelium-derived vasoactive peptides involved in a variety of biological functions. tmpzr1t_l9r_go_relaxed.owl endothelin-1 secretion|EDN3 production|EDN1 production|endothelin-2 production|EDN2 production|endothelin secretion|endothelin-3 production sl 2015-06-15T23:13:18Z biological_process owl:Class GO:0071369 biolink:NamedThing cellular response to ethylene stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to ethene stimulus mah 2009-12-11T03:13:57Z biological_process owl:Class GO:0072057 biolink:NamedThing inner stripe development The process whose specific outcome is the progression of the inner stripe over time, from its formation to the mature structure. The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thin descending and thick ascending portions of the loops of Henle. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:01:58Z biological_process owl:Class GO:0072054 biolink:NamedThing renal outer medulla development The process whose specific outcome is the progression of the renal outer medulla over time, from its formation to the mature structure. The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla. tmpzr1t_l9r_go_relaxed.owl outer renal medulla development mah 2010-01-25T04:00:42Z biological_process owl:Class GO:0031619 biolink:NamedThing homologous chromosome orientation involved in meiotic metaphase I plate congression The cell cycle process in which the sister centromeres of one chromosome attach to microtubules that emanate from the same spindle pole, which ensures that homologous maternal and paternal chromosomes are pulled in opposite directions at anaphase of meiosis I. tmpzr1t_l9r_go_relaxed.owl homologous chromosome orientation during meiosis|homologous chromosome orientation during meiosis I biological_process owl:Class GO:0043060 biolink:NamedThing meiotic metaphase I plate congression The alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the meiotic spindle, during meiosis I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021763 biolink:NamedThing subthalamic nucleus development The progression of the subthalamic nucleus over time from its initial formation until its mature state. The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function. tmpzr1t_l9r_go_relaxed.owl corpus luysi development biological_process owl:Class GO:0021539 biolink:NamedThing subthalamus development The process whose specific outcome is the progression of the subthalamus over time, from its formation to the mature structure. The subthalamus is the anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis. tmpzr1t_l9r_go_relaxed.owl ventral thalamus development biological_process owl:Class GO:0020039 biolink:NamedThing pellicle The structure enclosing certain parasite cells such as certain apicomplexa and Euglenozoa; consists of the cell membrane with its associated infrastructure of microtubules, microfilaments and other organelles. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060708 biolink:NamedThing spongiotrophoblast differentiation The process in which a relatively unspecialized cell of the ectoplacental cone acquires specialized features of a spongiotrophoblast of the placenta. A spongiotrophoblast cell is a basophilic cell. tmpzr1t_l9r_go_relaxed.owl spongiotrophoblast cell differentiation dph 2009-06-09T10:38:10Z biological_process owl:Class GO:0120279 biolink:NamedThing Z granule A small cytoplasmic, non-membranous RNA/protein complex aggregate in the primordial germ cells that are distinct from, but colocalize with or are adjacent to, P granules and mutator foci and are associated with RNA metabolism. Z granules have been observed in C. elegans. tmpzr1t_l9r_go_relaxed.owl germline granule https://github.com/geneontology/go-ontology/issues/20108 krc 2020-10-21T18:27:05Z cellular_component owl:Class GO:0060293 biolink:NamedThing germ plasm Differentiated cytoplasm associated with a pole of an oocyte, egg or early embryo that will be inherited by the cells that will give rise to the germ line. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Germ_plasm cellular_component owl:Class GO:1903570 biolink:NamedThing regulation of protein kinase D signaling Any process that modulates the frequency, rate or extent of protein kinase D signaling. tmpzr1t_l9r_go_relaxed.owl regulation of PKD signal transduction|regulation of PKD signaling cascade|regulation of protein kinase D signalling cascade|regulation of protein kinase D signaling cascade|regulation of protein kinase D signal transduction rl 2014-10-27T15:18:00Z biological_process owl:Class GO:0052324 biolink:NamedThing plant-type cell wall cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall. tmpzr1t_l9r_go_relaxed.owl cell wall cellulose biosynthesis|cellulose biosynthesis during cell wall biosynthesis biological_process owl:Class GO:0048822 biolink:NamedThing enucleate erythrocyte development The process aimed at the progression of an enucleate erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl enucleate red blood cell development|enucleate RBC development biological_process owl:Class GO:0043353 biolink:NamedThing enucleate erythrocyte differentiation The process in which a myeloid precursor cell acquires specialized features of an erythrocyte without a nucleus. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl enucleate red blood cell differentiation|enucleate RBC differentiation biological_process owl:Class GO:0051402 biolink:NamedThing neuron apoptotic process Any apoptotic process in a neuron, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. tmpzr1t_l9r_go_relaxed.owl programmed cell death, neurons|neuron apoptosis|programmed cell death of neurons by apoptosis|apoptosis of neuronal cells|programmed cell death of neuronal cells by apoptosis|programmed cell death, neuronal cells|neuronal cell programmed cell death by apoptosis|neuron programmed cell death by apoptosis|neuronal cell apoptosis|apoptosis of neurons biological_process owl:Class GO:0021719 biolink:NamedThing superior olivary nucleus morphogenesis The process in which the anatomical structure of the superior olivary nucleus is generated and organized. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. tmpzr1t_l9r_go_relaxed.owl superior olive morphogenesis biological_process owl:Class GO:1905291 biolink:NamedThing positive regulation of CAMKK-AMPK signaling cascade Any process that activates or increases the frequency, rate or extent of CAMKK-AMPK signaling cascade. tmpzr1t_l9r_go_relaxed.owl upregulation of CAMKK-AMPK signaling cascade|up regulation of stress-activated AMP-activated protein kinase signaling cascade|activation of stress-activated AMP-activated protein kinase signaling cascade|up-regulation of CAMKK-AMPK signaling cascade|up-regulation of stress-activated AMP-activated protein kinase signaling cascade|upregulation of stress-activated AMP-activated protein kinase signaling cascade|positive regulation of stress-activated AMP-activated protein kinase signaling cascade|up regulation of CAMKK-AMPK signaling cascade|activation of CAMKK-AMPK signaling cascade sl 2016-06-23T20:37:10Z biological_process owl:Class GO:2001143 biolink:NamedThing N-methylnicotinate transport The directed movement of a N-methylnicotinateacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2011-10-18T05:16:08Z biological_process owl:Class GO:0033382 biolink:NamedThing maintenance of granzyme B location in T cell secretory granule A process in which the protease granyme B is maintained in a secretory granule in a T cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of granzyme B localization in T cell secretory granule|maintenance of granzyme B localization in T-lymphocyte secretory granule|maintenance of granzyme B localization in T-cell secretory granule|maintenance of granzyme B localization in T lymphocyte secretory granule biological_process owl:Class GO:0033380 biolink:NamedThing granzyme B localization to T cell secretory granule Any process in which the protease granzyme B is transported to, or maintained in, a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl granzyme B localization in T cell secretory granule|granzyme B localization in T lymphocyte secretory granule|granzyme B localization in T-lymphocyte secretory granule|granzyme B localisation in T cell secretory granule|granzyme B localization in T-cell secretory granule biological_process owl:Class GO:0042638 biolink:NamedThing exogen The shedding phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl hair shedding Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0048820 biolink:NamedThing hair follicle maturation A developmental process, independent of morphogenetic (shape) change, that is required for a hair follicle to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902986 biolink:NamedThing regulation of lysine biosynthetic process via aminoadipic acid Any process that modulates the frequency, rate or extent of lysine biosynthetic process via aminoadipic acid. tmpzr1t_l9r_go_relaxed.owl regulation of lysine biosynthesis, aminoadipic acid pathway|regulation of lysine formation via aminoadipic acid|regulation of lysine synthesis via aminoadipic acid|regulation of lysine anabolism via aminoadipic acid|regulation of lysine biosynthetic process, aminoadipic acid pathway|regulation of lysine biosynthetic process, aminoadipic pathway|regulation of lysine biosynthesis, aminoadipic pathway al 2014-05-07T08:07:08Z biological_process owl:Class GO:0019878 biolink:NamedThing lysine biosynthetic process via aminoadipic acid The chemical reactions and pathways resulting in the formation of lysine by the aminoadipic pathway. tmpzr1t_l9r_go_relaxed.owl lysine biosynthetic process, aminoadipic pathway|lysine biosynthesis, aminoadipic pathway|lysine formation via aminoadipic acid|lysine biosynthesis, aminoadipic acid pathway|lysine synthesis via aminoadipic acid|lysine anabolism via aminoadipic acid|lysine biosynthetic process, aminoadipic acid pathway biological_process owl:Class GO:0044230 biolink:NamedThing host cell envelope An envelope that surrounds a bacterial host cell and includes the host cytoplasmic membrane and everything external, encompassing the host periplasmic space, host cell wall, and host outer membrane if present. tmpzr1t_l9r_go_relaxed.owl jl 2009-12-03T03:24:03Z cellular_component owl:Class GO:0075192 biolink:NamedThing haustorium mother cell formation The process in which a symbiont cell is formed, separated from the tip of an infection hypha by a septum. The haustorium mother cell usually contains 2-4 fungal nuclei, and its function is to attach and penetrate the host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl haustorium mother cell formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0071036 biolink:NamedThing nuclear polyadenylation-dependent snoRNA catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nucleolar RNA (snoRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snoRNA. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent snoRNA catabolic process krc 2009-07-29T01:04:44Z biological_process owl:Class GO:0003244 biolink:NamedThing radial growth involved in right ventricle morphogenesis The morphogenic growth in which the right ventricle grows along a radial axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:38:23Z biological_process owl:Class GO:1990154 biolink:NamedThing enzyme IIA-maltose transporter complex A protein complex consisting of the pentameric maltose transporter complex bound to two enzyme IIA (EIIA) molecules. EIIA is a component of the glucose-specific phosphotransferase system that inhibits maltose transport from the periplasm to the cytoplasm. When EIIA-bound, the maltose transporter remains in the open, inward-facing conformation, which prevents binding of maltose-loaded maltose binding protein (MBP) to the transporter. tmpzr1t_l9r_go_relaxed.owl maltose transporter inhibitor complex|EIIA(Glc)-maltose transporter complex|EIIA(Glc)-MalFGK2 complex bhm 2013-08-01T09:27:25Z cellular_component owl:Class GO:1904456 biolink:NamedThing negative regulation of neuronal action potential Any process that stops, prevents or reduces the frequency, rate or extent of neuronal action potential. tmpzr1t_l9r_go_relaxed.owl down regulation of generation of action potential|down-regulation of generation of action potential|down regulation of neuronal action potential|downregulation of neuronal action potential|negative regulation of generation of action potential|downregulation of generation of action potential|inhibition of generation of action potential|down-regulation of neuronal action potential|inhibition of neuronal action potential sl 2015-07-09T18:02:40Z biological_process owl:Class GO:0021891 biolink:NamedThing olfactory bulb interneuron development The process whose specific outcome is the progression of an interneuron residing in the olfactory bulb, from its initial commitment, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046621 biolink:NamedThing negative regulation of organ growth Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090094 biolink:NamedThing metanephric cap mesenchymal cell proliferation involved in metanephros development The multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-13T10:34:10Z biological_process owl:Class GO:0098566 biolink:NamedThing transport vesicle lumen The volume enclosed within the membrane of a transport vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014808 biolink:NamedThing release of sequestered calcium ion into cytosol by sarcoplasmic reticulum The process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels. tmpzr1t_l9r_go_relaxed.owl release of sequestered calcium ion by sarcoplasmic reticulum into cytosol biological_process owl:Class GO:1900363 biolink:NamedThing regulation of mRNA polyadenylation Any process that modulates the frequency, rate or extent of mRNA polyadenylation. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA polyadenylylation|regulation of cleavage and polyadenylylation specificity factor activity pr 2012-04-12T04:36:21Z biological_process owl:Class GO:0006378 biolink:NamedThing mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. tmpzr1t_l9r_go_relaxed.owl mRNA polyadenylylation|cleavage and polyadenylylation specificity factor activity biological_process owl:Class GO:0000177 biolink:NamedThing cytoplasmic exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. tmpzr1t_l9r_go_relaxed.owl prokaryotic exosome multienzyme ribonuclease complex|cytoplasmic exosome multienzyme ribonuclease complex|cytoplasmic exosome (ribonuclease complex) cellular_component owl:Class GO:1902876 biolink:NamedThing negative regulation of embryonic pattern specification Any process that stops, prevents or reduces the frequency, rate or extent of embryonic pattern specification. tmpzr1t_l9r_go_relaxed.owl inhibition of embryonic pattern specification|negative regulation of ventral/lateral system|inhibition of ventral/lateral system|down regulation of embryonic pattern specification|down-regulation of embryonic pattern specification|down regulation of ventral/lateral system|downregulation of embryonic pattern specification|down-regulation of ventral/lateral system|downregulation of ventral/lateral system mr 2014-04-03T15:25:20Z biological_process owl:Class GO:0009880 biolink:NamedThing embryonic pattern specification The process that results in the patterns of cell differentiation that will arise in an embryo. tmpzr1t_l9r_go_relaxed.owl embryonic pattern biosynthesis|ventral/lateral system|embryonic pattern formation biological_process owl:Class GO:1903537 biolink:NamedThing meiotic cell cycle process involved in oocyte maturation Any meiotic cell cycle process that is involved in oocyte maturation. tmpzr1t_l9r_go_relaxed.owl meiosis involved in oocyte maturation pr 2014-10-09T10:46:14Z biological_process owl:Class GO:0001890 biolink:NamedThing placenta development The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin. tmpzr1t_l9r_go_relaxed.owl placentation|placental development biological_process owl:Class GO:0110072 biolink:NamedThing apical constriction involved in ventral furrow formation The actin-mediated process that results in contraction of the apical end of a polarized columnar epithelial cell, contributing to formation of a ventral indentation (furrow) from the blastoderm epithelium, which is internalized to form a tube in the interior of the embryo, marking the start of gastrulation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-12-06T17:04:49Z biological_process owl:Class GO:0061948 biolink:NamedThing premature acrosome loss The discharge, by sperm, of a single, anterior secretory granule before the sperm reaches to the zona pellucida of the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the exocytosis of the acrosomal contents. tmpzr1t_l9r_go_relaxed.owl spontaneous acrosome loss If the release of the acrosome content when the sperm reaches to the zona pellucida, consider using acrosome reaction. dph 2017-10-25T17:46:55Z biological_process owl:Class GO:0061141 biolink:NamedThing lung ciliated cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a lung ciliated cell. A lung ciliated cell is a specialized lung epithelial cell that contains cilia for moving substances released from lung secretory cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T09:31:14Z biological_process owl:Class GO:0010844 biolink:NamedThing recombination hotspot binding Binding to a genomic region which promotes recombination. tmpzr1t_l9r_go_relaxed.owl DNA binding, recombination hotspot molecular_function owl:Class GO:0030904 biolink:NamedThing retromer complex A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990000 biolink:NamedThing amyloid fibril formation The generation of amyloid fibrils, insoluble fibrous protein aggregates exhibiting beta sheet structure, from proteins. tmpzr1t_l9r_go_relaxed.owl amyloid structure assembly|amyloid structure formation|amyloid fibril assembly Although deposition of amyloid fibrils is associated with diseases, e.g. Alzheimer's disease, amyloid formation is a normal process. Disease occurs when the balance between amyloid formation and clearance is disrupted (reviewed e.g. in PMID:29654159 and PMID:28937655). An example of a normal amyloid complex is composed of human RIP1 and RIP3 kinases (PMID:22817896). pr 2012-11-27T16:01:02Z biological_process owl:Class GO:0086038 biolink:NamedThing calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in), which contributes to regulating the membrane potential of a cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-11T03:33:44Z molecular_function owl:Class GO:0086036 biolink:NamedThing regulation of cardiac muscle cell membrane potential Any process that modulates the establishment or extent of a membrane potential in a cardiac muscle cell (a cardiomyocyte). A membrane potential is the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-11T03:23:36Z biological_process owl:Class GO:1901214 biolink:NamedThing regulation of neuron death Any process that modulates the frequency, rate or extent of neuron death. tmpzr1t_l9r_go_relaxed.owl regulation of neuronal cell death|regulation of neuron cell death rph 2012-08-02T09:57:41Z biological_process owl:Class GO:0001793 biolink:NamedThing IgM receptor activity Combining with an immunoglobulin of the IgM isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098599 biolink:NamedThing palmitoyl hydrolase activity Catalysis of a hydrolase reaction that removes a palmitoyl moiety from some substrate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9027670|Reactome:R-HSA-5690046 dos 2014-04-11T17:57:36Z molecular_function owl:Class GO:0098734 biolink:NamedThing macromolecule depalmitoylation The removal of palymitoyl groups from a macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035171 biolink:NamedThing lamellocyte differentiation The process in which a relatively unspecialized hemocyte precursor cell acquires the specialized features of a lamellocyte. Lamellocytes are a hemocyte lineage that exists only in larvae, but are seldom observed in healthy animals. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes. tmpzr1t_l9r_go_relaxed.owl lamellocyte cell differentiation biological_process owl:Class GO:0045627 biolink:NamedThing positive regulation of T-helper 1 cell differentiation Any process that activates or increases the frequency, rate or extent of T-helper 1 cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of T-helper 1 cell differentiation|activation of T-helper 1 cell differentiation|stimulation of T-helper 1 cell differentiation|positive regulation of T-helper 1 cell development|upregulation of T-helper 1 cell differentiation|up regulation of T-helper 1 cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0004174 biolink:NamedThing electron-transferring-flavoprotein dehydrogenase activity Catalysis of the reaction: a ubiquinone + reduced [electron-transfer flavoprotein] = a ubiquinol + H+ + oxidized [electron-transfer flavoprotein]. tmpzr1t_l9r_go_relaxed.owl ETF:ubiquinone oxidoreductase activity|ETF-QO activity|electron transfer flavoprotein reductase activity|electron transfer flavoprotein dehydrogenase activity|electron transfer flavoprotein Q oxidoreductase activity|ETF dehydrogenase activity|electron-transferring-flavoprotein:ubiquinone oxidoreductase activity|ETF-ubiquinone oxidoreductase activity|electron transfer flavoprotein-ubiquinone oxidoreductase activity MetaCyc:1.5.5.1-RXN|RHEA:24052|EC:1.5.5.1|Reactome:R-HSA-169270 molecular_function owl:Class GO:0062227 biolink:NamedThing positive regulation of adult somatic muscle development Any process that increases the rate, frequency or extent of adult somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:29:41Z biological_process owl:Class GO:0003100 biolink:NamedThing regulation of systemic arterial blood pressure by endothelin The process in which endothelin modulates the force with which blood passes through the circulatory system. Endothelin is a hormone that is released by the endothelium, and it is a vasoconstrictor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090141 biolink:NamedThing positive regulation of mitochondrial fission Any process that increases the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitochondrial division tb 2009-12-08T02:20:48Z biological_process owl:Class GO:0010896 biolink:NamedThing regulation of triglyceride catabolic process Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. tmpzr1t_l9r_go_relaxed.owl regulation of triacylglycerol catabolic process biological_process owl:Class GO:2000020 biolink:NamedThing positive regulation of male gonad development Any process that activates or increases the frequency, rate or extent of male gonad development. tmpzr1t_l9r_go_relaxed.owl positive regulation of testicular development|positive regulation of testis development jl 2010-07-15T03:29:13Z biological_process owl:Class GO:0008584 biolink:NamedThing male gonad development The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl testicular development|testis development biological_process owl:Class GO:0110070 biolink:NamedThing cellularization cleavage furrow A plasma membrane invagination at the site of separation of a multi-nucleate cell or syncytium into individual cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14543|https://github.com/geneontology/go-ontology/issues/21737 kmv 2017-11-22T20:10:14Z cellular_component owl:Class GO:0080181 biolink:NamedThing lateral root branching Any process involved in the formation of branches in lateral roots. tmpzr1t_l9r_go_relaxed.owl dhl 2011-08-10T04:13:33Z biological_process owl:Class GO:0018993 biolink:NamedThing somatic sex determination The determination of sex and sexual phenotypes in an organism's soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046551 biolink:NamedThing retinal cone cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell. A retinal cone cell is one of the two photoreceptor subtypes in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010807 biolink:NamedThing regulation of synaptic vesicle priming Any process that modulates the frequency, rate or extent of synaptic vesicle priming. Synaptic vesicle priming is the formation of SNARE-containing complexes, bringing synaptic vesicle membrane and plasma membranes into close proximity and thereby facilitating membrane fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001236 biolink:NamedThing regulation of extrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of extrinsic apoptotic signalling pathway|regulation of extrinsic apoptosis pr 2011-11-24T01:30:05Z biological_process owl:Class GO:0097191 biolink:NamedThing extrinsic apoptotic signaling pathway A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with either a ligand binding to a cell surface receptor, or a ligand being withdrawn from a cell surface receptor (e.g. in the case of signaling by dependence receptors), and ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl extrinsic apoptotic signaling pathway in presence of ligand|extrinsic apoptotic pathway|extrinsic apoptosis|death receptor-mediated apoptosis|extrinsic apoptotic signalling pathway Fas acts as a death receptor with a role in apoptosis, but can also act as a non-apoptotic signal transducer. pr 2011-11-23T09:34:28Z biological_process owl:Class GO:0120291 biolink:NamedThing negative regulation of mitotic recombination involved in replication fork processing Any process that inhibits or decreases the rate of mitotic DNA recombination during replication fork processing. Suppression of recombination at replication forks is necessary to prevent template switching. tmpzr1t_l9r_go_relaxed.owl suppression of template switching during replication fork processing|negative regulation of template switch recombination involved in replication fork processing|maintenance of template fidelity during replication fork processing krc 2021-01-06T01:21:55Z biological_process owl:Class GO:0031297 biolink:NamedThing replication fork processing The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes. tmpzr1t_l9r_go_relaxed.owl recovery from replication fork arrest|replication fork processing at rDNA locus|recovery from replication fork arrest at rDNA locus|replication fork restart|recovery from replication fork stalling at rDNA locus|collapsed replication fork processing|recovery from replication fork stalling|replication restart|replication fork processing at ribosomal DNA locus GO:0034065 biological_process owl:Class GO:1900395 biolink:NamedThing negative regulation of kojic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of kojic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|down regulation of C6H6O4 biosynthesis|inhibition of C6H6O4 biosynthetic process|inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|down regulation of C6H6O4 synthesis|downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|down-regulation of C6H6O4 biosynthesis|down-regulation of C6H6O4 formation|down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|negative regulation of C6H6O4 biosynthesis|inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|negative regulation of kojic acid anabolism|down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|inhibition of kojic acid synthesis|downregulation of kojic acid formation|down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|down regulation of kojic acid synthesis|down regulation of kojic acid anabolism|down-regulation of C6H6O4 synthesis|negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|negative regulation of kojic acid formation|downregulation of kojic acid biosynthetic process|downregulation of C6H6O4 biosynthetic process|inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|downregulation of C6H6O4 anabolism|negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|downregulation of C6H6O4 formation|downregulation of kojic acid synthesis|negative regulation of C6H6O4 biosynthetic process|down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|inhibition of kojic acid formation|down-regulation of kojic acid synthesis|down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|inhibition of kojic acid anabolism|down-regulation of kojic acid anabolism|down-regulation of C6H6O4 biosynthetic process|down regulation of kojic acid biosynthetic process|down regulation of C6H6O4 biosynthetic process|down regulation of C6H6O4 formation|negative regulation of C6H6O4 synthesis|down-regulation of C6H6O4 anabolism|downregulation of kojic acid biosynthesis|downregulation of C6H6O4 synthesis|downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|inhibition of C6H6O4 biosynthesis|down regulation of kojic acid biosynthesis|inhibition of kojic acid biosynthesis|inhibition of C6H6O4 anabolism|inhibition of kojic acid biosynthetic process|inhibition of C6H6O4 formation|down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|negative regulation of C6H6O4 anabolism|down regulation of kojic acid formation|down regulation of C6H6O4 anabolism|inhibition of C6H6O4 synthesis|down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|down-regulation of kojic acid biosynthetic process|down-regulation of kojic acid biosynthesis|negative regulation of C6H6O4 formation|negative regulation of kojic acid biosynthesis|downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|down-regulation of kojic acid formation|downregulation of C6H6O4 biosynthesis|downregulation of kojic acid anabolism|inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|negative regulation of kojic acid synthesis di 2012-04-18T04:20:03Z biological_process owl:Class GO:0005721 biolink:NamedThing pericentric heterochromatin Heterochromatin that is located adjacent to the CENP-A rich centromere 'central core' and characterized by methylated H3 histone at lysine 9 (H3K9me2/H3K9me3). tmpzr1t_l9r_go_relaxed.owl centric heterochromatin|nuclear cluster|nuclear centric heterochromatin|centromeric heterochromatin|nuclear pericentric heterochromatin GO:0002137|GO:0031618 cellular_component owl:Class GO:0033105 biolink:NamedThing chlorosome envelope The structure, composed of a monolayer of glycolipids with embedded proteins, that encloses the pigments and other contents of the chlorosome. tmpzr1t_l9r_go_relaxed.owl chlorosome membrane Note that the chlorosome envelope is not a single or double lipid bilayer, so this term is not a child of 'organelle membrane ; GO:0031090' or 'organelle envelope ; GO:0031967'. cellular_component owl:Class GO:0046858 biolink:NamedThing chlorosome A large enclosure of aggregated pigment, typically bacteriochlorophyll c (BChl c), that acts as a light-harvesting antenna structure and is characteristic of green photosynthetic bacteria (e.g. Chlorobiaceae). The BChl aggregates are organized into lamellar elements by pigment-pigment rather than pigment-protein interactions. Chlorosomes also contain BChl a, carotenoids, quinones, lipids, and proteins, and are attached to the cytoplasmic membrane via a BChl a-containing protein baseplate. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chlorosome cellular_component owl:Class GO:1990262 biolink:NamedThing anti-Mullerian hormone signaling pathway A series of molecular signals initiated by the binding of anti-Mullerian hormone to its receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl An example of this is Amhr2 in M. musculus (Q8K592) a receptor for anti-mullerian hormone, described in PMID:23624077. hjd 2014-01-08T20:42:09Z biological_process owl:Class GO:0060926 biolink:NamedThing cardiac pacemaker cell development The process whose specific outcome is the progression of a pacemaker cell over time, from its formation to the mature state. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions. tmpzr1t_l9r_go_relaxed.owl pacemaker cell development dph 2009-09-29T11:51:55Z biological_process owl:Class GO:0044558 biolink:NamedThing uterine smooth muscle relaxation A process in which the extent of smooth muscle contraction is reduced in the uterus. tmpzr1t_l9r_go_relaxed.owl smooth muscle relaxation of the uterus jl 2012-04-05T02:57:11Z biological_process owl:Class GO:0110037 biolink:NamedThing regulation of nematode male tail tip morphogenesis Any process that modulates the frequency, rate or extent of nematode male tail tip morphogenesis, the process in which the anatomical structure of the adult male tail tip is generated and organized. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-24T20:21:34Z biological_process owl:Class GO:0051457 biolink:NamedThing maintenance of protein location in nucleus Any process in which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus. tmpzr1t_l9r_go_relaxed.owl sequestration of protein in nucleus|storage of protein in nucleus|protein retention in nucleus|nuclear protein sequestration|protein sequestration in nucleus|maintenance of protein location in cell nucleus|nuclear protein retention|protein-nuclear retention|maintenance of protein localization in nucleus|protein storage in nucleus|maintenance of nuclear protein localization|nuclear protein sequestering biological_process owl:Class GO:0090561 biolink:NamedThing nuclear migration during mitotic telophase The dynein-driven microtubule based nuclear migration, whereby daughter nuclei are positioned away from the cell division site prior to cytokinesis. tmpzr1t_l9r_go_relaxed.owl tb 2014-03-27T15:17:10Z biological_process owl:Class GO:0007483 biolink:NamedThing genital disc morphogenesis The process in which the anatomical structures derived from the genital disc are generated and organized. This includes the transformation of a genital imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into the recognizable adult genital structures, the anal plates and the hind gut. tmpzr1t_l9r_go_relaxed.owl genital disc metamorphosis biological_process owl:Class GO:1904706 biolink:NamedThing negative regulation of vascular associated smooth muscle cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of VSMC proliferation|down-regulation of VSMC proliferation|down-regulation of vascular smooth muscle cell proliferation|downregulation of vascular smooth muscle cell proliferation|negative regulation of vascular smooth muscle cell proliferation|inhibition of VSMC proliferation|down regulation of vascular smooth muscle cell proliferation|negative regulation of VSMC proliferation|down regulation of VSMC proliferation|inhibition of vascular smooth muscle cell proliferation sl 2015-10-01T16:05:26Z biological_process owl:Class GO:0046320 biolink:NamedThing regulation of fatty acid oxidation Any process that modulates the frequency, rate or extent of fatty acid oxidation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060829 biolink:NamedThing negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin in the anterior end of the neural plate. This regulation sets up a Wnt signaling gradient along the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl negative regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern|negative regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation|negative regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern|negative regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:58:33Z biological_process owl:Class GO:1902217 biolink:NamedThing erythrocyte apoptotic process Any apoptotic process in an erythrocyte. tmpzr1t_l9r_go_relaxed.owl RBC apoptotic process|RBC apoptosis|red blood cell apoptotic process|erythrocyte apoptosis|red blood cell apoptosis rl 2013-06-13T10:02:29Z biological_process owl:Class GO:0062107 biolink:NamedThing regulation of protein localization to non-growing cell tip Any process that modulates the frequency, rate or extent of protein localization to a non-growing cell tip. tmpzr1t_l9r_go_relaxed.owl dph 2019-02-05T12:59:18Z biological_process owl:Class GO:1902487 biolink:NamedThing protein localization to non-growing cell tip A process in which a protein is transported to, or maintained in, a location within a non-growing cell tip. tmpzr1t_l9r_go_relaxed.owl protein localization in non-growing cell tip|protein localisation to non-growing cell tip|protein localisation in non-growing cell tip mah 2013-11-12T16:38:22Z biological_process owl:Class GO:1905690 biolink:NamedThing nucleus disassembly The disaggregation of a nucleus into its constituent components. tmpzr1t_l9r_go_relaxed.owl cell nucleus disassembly pr 2016-11-14T13:38:57Z biological_process owl:Class GO:0072167 biolink:NamedThing specification of mesonephric tubule identity The process in which the tubules of the mesonephros acquire their identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:51:03Z biological_process owl:Class GO:0097186 biolink:NamedThing amelogenesis The process whose specific outcome is the formation of tooth enamel, occurring in two stages: secretory stage and maturation stage. tmpzr1t_l9r_go_relaxed.owl enamel development pr 2011-11-21T09:01:24Z biological_process owl:Class GO:0016519 biolink:NamedThing gastric inhibitory peptide receptor activity Combining with gastric inhibitory peptide (GIP) and transmitting the signal across the membrane to activate an associated G-protein. tmpzr1t_l9r_go_relaxed.owl GIP receptor activity|glucose-dependent insulinotropic polypeptide receptor activity molecular_function owl:Class GO:0098035 biolink:NamedThing viral DNA genome packaging via site-specific sequence recognition The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites by a viral terminase. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-20T11:36:49Z biological_process owl:Class GO:0002341 biolink:NamedThing central B cell anergy Any process contributing to anergy, a state of functional inactivation that occurs as part of tolerance induction, in B cells in the bone marrow. tmpzr1t_l9r_go_relaxed.owl central B-cell anergy|central B-lymphocyte anergy|central B lymphocyte anergy biological_process owl:Class GO:0120020 biolink:NamedThing cholesterol transfer activity Removes cholesterol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl cholesterol transporter activity|cholesterol carrier activity|intermembrane cholesterol transfer activity https://github.com/geneontology/go-ontology/issues/12329 Reactome:R-HSA-265443|Reactome:R-HSA-1454928|Reactome:R-HSA-5682111|Reactome:R-HSA-8951850|Reactome:R-HSA-265545|Reactome:R-HSA-266082|Reactome:R-HSA-216723 krc 2017-03-17T04:46:12Z GO:0017127 molecular_function owl:Class GO:0005977 biolink:NamedThing glycogen metabolic process The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages. tmpzr1t_l9r_go_relaxed.owl glycogen metabolism biological_process owl:Class GO:0046673 biolink:NamedThing negative regulation of compound eye retinal cell programmed cell death Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death that occurs in the compound eye retina. tmpzr1t_l9r_go_relaxed.owl inhibition of retinal cell programmed cell death|negative regulation of retinal cell programmed cell death|down-regulation of retinal cell programmed cell death|negative regulation of retina cell programmed cell death|downregulation of retinal cell programmed cell death|down regulation of retinal cell programmed cell death biological_process owl:Class GO:0046667 biolink:NamedThing compound eye retinal cell programmed cell death Programmed cell death that occurs in the retina to remove excess cells between ommatidia, thus resulting in a hexagonal lattice, precise with respect to cell number and position surrounding each ommatidium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903021 biolink:NamedThing regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands Any process that modulates the frequency, rate or extent of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-14T23:44:35Z biological_process owl:Class GO:0090580 biolink:NamedThing phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands Catalysis of the hydrolytic removal of phosphoglycolate from the 3'-terminus of a 3'-phosphoglycolate-terminated DNA strand. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-14T15:52:41Z molecular_function owl:Class GO:0061330 biolink:NamedThing Malpighian tubule stellate cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule stellate cell. A Malpighian tubule stellate cell is a specialized epithelial secretory cell that moves chloride ions and water across the tubule epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T01:32:55Z biological_process owl:Class GO:1900047 biolink:NamedThing negative regulation of hemostasis Any process that stops, prevents or reduces the frequency, rate or extent of hemostasis. tmpzr1t_l9r_go_relaxed.owl downregulation of hemostasis|down-regulation of hemostasis|down regulation of hemostasis|inhibition of hemostasis jl 2012-01-19T03:23:42Z biological_process owl:Class GO:0072043 biolink:NamedThing regulation of pre-tubular aggregate formation by cell-cell signaling Any process that mediates the transfer of information from one cell to another that modulates the rate, frequency, or extent of pre-tubular aggregate formation. Pre-tubular aggregate formation is the cell adhesion process in which mesenchymal cells adhere to one another in the initial stages of the formation of the pre-tubular aggregate, the earliest recognizable structure of the kidney. tmpzr1t_l9r_go_relaxed.owl regulation of pre-tubular aggregate formation by cell-cell signalling mah 2010-01-25T03:12:03Z biological_process owl:Class GO:0070859 biolink:NamedThing positive regulation of bile acid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of bile acids. tmpzr1t_l9r_go_relaxed.owl up-regulation of bile acid biosynthetic process|positive regulation of bile acid anabolism|positive regulation of bile acid synthesis|activation of bile acid biosynthetic process|up regulation of bile acid biosynthetic process|upregulation of bile acid biosynthetic process|positive regulation of bile acid biosynthesis|positive regulation of bile acid formation|stimulation of bile acid biosynthetic process mah 2009-08-14T03:22:58Z biological_process owl:Class GO:0006699 biolink:NamedThing bile acid biosynthetic process The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile. tmpzr1t_l9r_go_relaxed.owl bile acid biosynthesis|bile acid formation|bile acid anabolism|bile acid synthesis biological_process owl:Class GO:0048385 biolink:NamedThing regulation of retinoic acid receptor signaling pathway Any process that modulates the frequency, rate or extent of retinoic acid receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl regulation of RAR signaling pathway|regulation of retinoic acid receptor signalling pathway biological_process owl:Class GO:0060014 biolink:NamedThing granulosa cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a granulosa cell, a supporting cell for the developing female gamete in the ovary of mammals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001731 biolink:NamedThing formation of translation preinitiation complex The joining of the small ribosomal subunit, ternary complex, and mRNA. tmpzr1t_l9r_go_relaxed.owl translation preinitiation complex assembly|formation of translation pre-initiation complex See also the cellular component terms 'eukaryotic 43S preinitiation complex ; GO:0016282', 'eukaryotic 48S initiation complex ; GO:0033290', and their children. biological_process owl:Class GO:0034746 biolink:NamedThing APC-IQGAP1-CLIP-170 complex A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Cdc42, and CLIP-170; may play a role in cytoskeleton organization and cell migration. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0003383 biolink:NamedThing apical constriction The actin-mediated process that results in the contraction of the apical end of a polarized columnar epithelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T07:30:34Z biological_process owl:Class GO:0003382 biolink:NamedThing epithelial cell morphogenesis The change in form that occurs when an epithelial cell progresses from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T07:21:06Z biological_process owl:Class GO:0002430 biolink:NamedThing complement receptor mediated signaling pathway A series of molecular signals generated as a consequence of a component of the complement pathway binding to a complement receptor. Such components include both whole complement proteins and fragments of complement proteins generated through the activity of the complement pathway. tmpzr1t_l9r_go_relaxed.owl complement receptor mediated signalling pathway|immune response-regulating cell surface receptor signalling pathway biological_process owl:Class GO:0030353 biolink:NamedThing fibroblast growth factor receptor antagonist activity Interacts with the fibroblast growth factor receptor to reduce the action of another ligand, the agonist. tmpzr1t_l9r_go_relaxed.owl FGF receptor antagonist activity|FGFR antagonist activity molecular_function owl:Class GO:1901834 biolink:NamedThing regulation of deadenylation-independent decapping of nuclear-transcribed mRNA Any process that modulates the frequency, rate or extent of deadenylation-independent decapping of nuclear-transcribed mRNA. tmpzr1t_l9r_go_relaxed.owl regulation of deadenylation-independent decapping of nuclear mRNA|regulation of deadenylylation-independent decapping al 2013-01-22T22:42:17Z biological_process owl:Class GO:0002232 biolink:NamedThing leukocyte chemotaxis involved in inflammatory response The movement of an immune cell in response to an external stimulus contributing to an inflammatory response. tmpzr1t_l9r_go_relaxed.owl leucocyte chemotaxis during inflammatory response|immune cell chemotaxis during inflammatory response|leukocyte chemotaxis during inflammatory response biological_process owl:Class GO:0048286 biolink:NamedThing lung alveolus development The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways. tmpzr1t_l9r_go_relaxed.owl alveolarization|alveologenesis biological_process owl:Class GO:0071710 biolink:NamedThing membrane macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule destined to form part of a membrane in a cell. tmpzr1t_l9r_go_relaxed.owl membrane macromolecule synthesis|membrane macromolecule formation|membrane macromolecule anabolism|membrane macromolecule biosynthesis mah 2010-03-10T11:29:52Z biological_process owl:Class GO:1990915 biolink:NamedThing structural constituent of ascospore wall The action of a molecule that contributes to the structural integrity of an ascospore wall. tmpzr1t_l9r_go_relaxed.owl al 2015-12-09T19:04:53Z molecular_function owl:Class GO:0046411 biolink:NamedThing 2-keto-3-deoxygluconate transmembrane transport The process in which 2-keto-3-deoxygluconate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxygluconate transport biological_process owl:Class GO:0021941 biolink:NamedThing negative regulation of cerebellar granule cell precursor proliferation The process that stops, prevents or reduces the rate or extent of granule cell precursor proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of granule cell precursor proliferation|down regulation of granule cell precursor proliferation|downregulation of granule cell precursor proliferation|inhibition of granule cell precursor proliferation biological_process owl:Class GO:0002657 biolink:NamedThing positive regulation of tolerance induction to nonself antigen Any process that activates or increases the frequency, rate, or extent of tolerance induction to nonself antigen. tmpzr1t_l9r_go_relaxed.owl upregulation of tolerance induction to nonself antigen|up-regulation of tolerance induction to nonself antigen|stimulation of tolerance induction to nonself antigen|up regulation of tolerance induction to nonself antigen|activation of tolerance induction to nonself antigen biological_process owl:Class GO:1901251 biolink:NamedThing positive regulation of lung goblet cell differentiation Any process that activates or increases the frequency, rate or extent of lung goblet cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of lung goblet cell differentiation|up regulation of pulmonary goblet cell differentiation|up-regulation of lung goblet cell differentiation|up regulation of lung goblet cell differentiation|upregulation of lung goblet cell differentiation|activation of pulmonary goblet cell differentiation|upregulation of pulmonary goblet cell differentiation|up-regulation of pulmonary goblet cell differentiation|positive regulation of pulmonary goblet cell differentiation vk 2012-08-08T08:59:44Z biological_process owl:Class GO:0004222 biolink:NamedThing metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl metalloendoproteinase activity|metalloendoprotease activity Reactome:R-HSA-194800|Reactome:R-HSA-5333671|Reactome:R-HSA-2168982|Reactome:R-HSA-2514790|Reactome:R-HSA-2473594|Reactome:R-HSA-181567|Reactome:R-HSA-8940561|Reactome:R-HSA-194809|Reactome:R-HSA-8943959|Reactome:R-HSA-1454822|Reactome:R-HSA-8874192|Reactome:R-HSA-3827958|Reactome:R-HSA-4086205|Reactome:R-HSA-2473584|Reactome:R-HSA-1564142|Reactome:R-HSA-2168046|Reactome:R-HSA-8876868|Reactome:R-HSA-8874201|Reactome:R-HSA-8942302|Reactome:R-HSA-1474196|Reactome:R-HSA-8874187|Reactome:R-HSA-2002440|Reactome:R-HSA-194793|Reactome:R-HSA-381435|Reactome:R-HSA-2002428|Reactome:R-HSA-5694082|Reactome:R-HSA-264758|Reactome:R-HSA-2534240|Reactome:R-HSA-5250892|Reactome:R-HSA-5250978|Reactome:R-HSA-1564120|Reactome:R-HSA-8940959|Reactome:R-HSA-2485148|Reactome:R-HSA-4224014|Reactome:R-HSA-1655851|Reactome:R-HSA-1454757|Reactome:R-HSA-1251992|Reactome:R-HSA-8949649|Reactome:R-HSA-6784620|Reactome:R-HSA-2022141|Reactome:R-HSA-1564143|Reactome:R-HSA-3371385|Reactome:R-HSA-1299476|Reactome:R-HSA-381518|Reactome:R-HSA-1299478|Reactome:R-HSA-420818|Reactome:R-HSA-8940554|Reactome:R-HSA-8940641|Reactome:R-HSA-5228578|Reactome:R-HSA-1564184|Reactome:R-HSA-2533874|Reactome:R-HSA-8867344|Reactome:R-HSA-1474210|Reactome:R-HSA-3791149|Reactome:R-HSA-9624272|Reactome:R-HSA-3791295|Reactome:R-HSA-5250606|Reactome:R-HSA-8874194|Reactome:R-HSA-3788075|Reactome:R-HSA-8949659|Reactome:R-HSA-194808|Reactome:R-HSA-2533944|Reactome:R-HSA-5362793|Reactome:R-HSA-1564112|EC:3.4.24.-|Reactome:R-HSA-2473596|Reactome:R-HSA-5250962|Reactome:R-HSA-2537499|Reactome:R-HSA-3791155|Reactome:R-HSA-2484882|Reactome:R-HSA-1458433|Reactome:R-HSA-1564179|Reactome:R-HSA-1564164|Reactome:R-HSA-381537|Reactome:R-HSA-2534248|Reactome:R-HSA-2485111|Reactome:R-HSA-3828025|Reactome:R-HSA-2533970|Reactome:R-HSA-194818|Reactome:R-HSA-1474213|Reactome:R-HSA-8874195|Reactome:R-HSA-3791319|Reactome:R-HSA-2533950|Reactome:R-HSA-2514831|Reactome:R-HSA-1168777|Reactome:R-HSA-1564117|Reactome:R-HSA-2179402|Reactome:R-HSA-177946|Reactome:R-HSA-2533965|Reactome:R-HSA-8877620|Reactome:R-HSA-194796|Reactome:R-HSA-8949668|Reactome:R-HSA-1564169|Reactome:R-HSA-1592310 molecular_function owl:Class GO:0038145 biolink:NamedThing macrophage colony-stimulating factor signaling pathway A series of molecular signals initiated by the binding of the cytokine macrophage colony-stimulating factor (M-CSF) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl macrophage colony-stimulating factor signalling pathway|M-CSF signaling pathway bf 2012-04-27T11:04:18Z biological_process owl:Class GO:0051464 biolink:NamedThing positive regulation of cortisol secretion Any process that activates or increases the frequency, rate or extent of the regulated release of cortisol from a cell. tmpzr1t_l9r_go_relaxed.owl activation of cortisol secretion|upregulation of cortisol secretion|up-regulation of cortisol secretion|up regulation of cortisol secretion|stimulation of cortisol secretion biological_process owl:Class GO:0042116 biolink:NamedThing macrophage activation A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl macrophage polarization biological_process owl:Class GO:0071887 biolink:NamedThing leukocyte apoptotic process Any apoptotic process in a leukocyte, an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue. tmpzr1t_l9r_go_relaxed.owl leukocyte apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). mah 2010-09-14T12:44:09Z biological_process owl:Class GO:0010694 biolink:NamedThing positive regulation of alkaline phosphatase activity Any process that increases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004035 biolink:NamedThing alkaline phosphatase activity Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum. tmpzr1t_l9r_go_relaxed.owl glycerophosphatase activity|alkaline phosphohydrolase activity|phosphate-monoester phosphohydrolase (alkaline optimum)|orthophosphoric-monoester phosphohydrolase (alkaline optimum)|phosphomonoesterase activity|alkaline phenyl phosphatase activity|alkaline phosphomonoesterase activity EC:3.1.3.1|Reactome:R-HSA-8878787|MetaCyc:ALKAPHOSPHA-RXN molecular_function owl:Class GO:0015887 biolink:NamedThing pantothenate transmembrane transport The process in which pantothenate is transported across a membrane. Pantothenate is the anion of pantothenic acid, the amide of beta-alanine and pantoic acid; it is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. tmpzr1t_l9r_go_relaxed.owl vitamin B5 transport|pantothenate membrane transport|pantothenate transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0043944 biolink:NamedThing negative regulation of asexual sporulation resulting in formation of a cellular spore Any process that stops, prevents, or reduces the frequency, rate or extent of the formation of a cellular spore derived from the products of mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000742 biolink:NamedThing karyogamy involved in conjugation with cellular fusion During sexual reproduction, the creation of a single nucleus from multiple nuclei as a result of fusing the lipid bilayers that surround each nuclei. This occurs after cytogamy. tmpzr1t_l9r_go_relaxed.owl karyogamy during conjugation with cellular fusion biological_process owl:Class GO:0006277 biolink:NamedThing DNA amplification The process in which the number of copies of a gene is increased in certain cells as extra copies of DNA are made in response to certain signals of cell development or of stress from the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051455 biolink:NamedThing monopolar spindle attachment to meiosis I kinetochore The process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex during meiosis I. During meiosis I sister kinetochores are lying next to each other facing the same spindle pole and monopolar attachment of the chromatid to the spindle occurs. tmpzr1t_l9r_go_relaxed.owl monopolar attachment|attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation|attachment of spindle microtubules to kinetochore during meiosis I|attachment of spindle microtubules to kinetochore involved in meiosis I|sister kinetochore mono-orientation Note that the synonym 'monopolar attachment' refers to the normal attachment of sister chromosomes to the spindle in meiosis I, and not to the aberrant attachment of sister kinetochores to a single pole in mitosis. biological_process owl:Class GO:0030251 biolink:NamedThing guanylate cyclase inhibitor activity Stops, prevents or reduces the activity of guanylate cyclase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000922 biolink:NamedThing negative regulation of arabinoxylan-containing compound catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of arabinoxylan-containing compound catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of arabinoxylan catabolism tt 2011-08-01T12:39:00Z biological_process owl:Class GO:0021657 biolink:NamedThing rhombomere 2 formation The process that gives rise to rhombomere 2. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016013 biolink:NamedThing syntrophin complex A protein complex that includes alpha-, beta1-, beta2-syntrophins and syntrophin-like proteins; the syntrophin complex binds to the second half of the carboxy-terminal domain of dystrophin; also associates with neuronal nitric oxide synthase. tmpzr1t_l9r_go_relaxed.owl nitric oxide synthase-dystrophin complex, skeletal muscle cellular_component owl:Class GO:0016010 biolink:NamedThing dystrophin-associated glycoprotein complex A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase. tmpzr1t_l9r_go_relaxed.owl dystrophin glycoprotein complex|DGC cellular_component owl:Class GO:0099564 biolink:NamedThing modification of synaptic structure, modulating synaptic transmission Any process that modulates synaptic transmission via modification of the structure of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0030686 biolink:NamedThing 90S preribosome A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905124 biolink:NamedThing negative regulation of glucosylceramidase activity Any process that stops, prevents or reduces the frequency, rate or extent of glucosylceramidase activity. tmpzr1t_l9r_go_relaxed.owl inhibition of glucosphingosine glucosylhydrolase activity|downregulation of glucosphingosine glucosylhydrolase activity|down regulation of acid beta-glucosidase activity|downregulation of acid beta-glucosidase activity|negative regulation of beta-glucosylceramidase activity|down regulation of glucosphingosine glucosylhydrolase activity|inhibition of glucosylceramidase activity|downregulation of beta-glucocerebrosidase activity|inhibition of beta-D-glucocerebrosidase activity|down-regulation of glucosylsphingosine beta-D-glucosidase activity|down regulation of glucosylcerebrosidase activity|down-regulation of glucosphingosine glucosylhydrolase activity|negative regulation of glucosylcerebrosidase activity|downregulation of ceramide glucosidase activity|negative regulation of ceramide glucosidase activity|down-regulation of glucosylceramidase activity|downregulation of beta-D-glucocerebrosidase activity|downregulation of GlcCer-beta-glucosidase activity|down regulation of GlcCer-beta-glucosidase activity|inhibition of acid beta-glucosidase activity|downregulation of beta-glucosylceramidase activity|down-regulation of psychosine hydrolase activity|negative regulation of glucocerebrosidase activity|inhibition of beta-glucosylceramidase activity|down regulation of beta-D-glucocerebrosidase activity|down-regulation of glucocerebrosidase activity|down regulation of glucosylsphingosine beta-D-glucosidase activity|negative regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|downregulation of glucosylcerebrosidase activity|negative regulation of glucosylsphingosine beta-glucosidase activity|inhibition of glucosylcerebrosidase activity|inhibition of ceramide glucosidase activity|negative regulation of beta-D-glucocerebrosidase activity|down regulation of beta-glucocerebrosidase activity|negative regulation of acid beta-glucosidase activity|inhibition of psychosine hydrolase activity|down-regulation of glucosylcerebrosidase activity|down regulation of glucosylsphingosine beta-glucosidase activity|downregulation of glucosylceramidase activity|negative regulation of beta-glucocerebrosidase activity|down-regulation of GlcCer-beta-glucosidase activity|inhibition of beta-glucocerebrosidase activity|downregulation of glucosylsphingosine beta-glucosidase activity|downregulation of glucosylsphingosine beta-D-glucosidase activity|down-regulation of ceramide glucosidase activity|downregulation of glucocerebrosidase activity|negative regulation of glucosphingosine glucosylhydrolase activity|down regulation of glucocerebrosidase activity|down-regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|inhibition of D-glucosyl-N-acylsphingosine glucohydrolase activity|negative regulation of glucosylsphingosine beta-D-glucosidase activity|downregulation of psychosine hydrolase activity|down-regulation of beta-glucosylceramidase activity|down-regulation of beta-glucocerebrosidase activity|down regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|down regulation of glucosylceramidase activity|downregulation of D-glucosyl-N-acylsphingosine glucohydrolase activity|inhibition of GlcCer-beta-glucosidase activity|down-regulation of glucosylsphingosine beta-glucosidase activity|down regulation of psychosine hydrolase activity|negative regulation of GlcCer-beta-glucosidase activity|down-regulation of beta-D-glucocerebrosidase activity|negative regulation of GCase activity|inhibition of glucocerebrosidase activity|down regulation of ceramide glucosidase activity|inhibition of glucosylsphingosine beta-D-glucosidase activity|inhibition of glucosylsphingosine beta-glucosidase activity|negative regulation of psychosine hydrolase activity|down-regulation of acid beta-glucosidase activity|down regulation of beta-glucosylceramidase activity bf 2016-04-11T15:44:35Z biological_process owl:Class GO:0004348 biolink:NamedThing glucosylceramidase activity Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl GlcCer-beta-glucosidase activity|D-glucosyl-N-acylsphingosine glucohydrolase activity|psychosine hydrolase activity|glucosylsphingosine beta-glucosidase activity|glucosylsphingosine beta-D-glucosidase activity|glucosphingosine glucosylhydrolase activity|beta-glucosylceramidase activity|beta-D-glucocerebrosidase activity|acid beta-glucosidase activity|beta-glucocerebrosidase activity|ceramide glucosidase activity|glucosylcerebrosidase activity|glucocerebrosidase activity Reactome:R-HSA-1861789|EC:3.2.1.45|Reactome:R-HSA-1861788|RHEA:13269|MetaCyc:GLUCOSYLCERAMIDASE-RXN|Reactome:R-HSA-1605591 molecular_function owl:Class GO:0001147 biolink:NamedThing transcription termination site sequence-specific DNA binding Binding to a sequence of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA polymerase terminator site sequence-specific DNA binding transcription factor activity|bacterial-type RNA polymerase termination site sequence-specific DNA binding|transcription termination site DNA binding|transcription factor activity, mitochondrial RNA polymerase terminator site sequence-specific binding|mitochondrial RNA polymerase termination site sequence-specific DNA binding Transcription termination sites can be recognized by the RNA polymerase (RNAP) itself or by another protein which interacts with the RNAP to promote transcription termination. Note that not all genes have a DNA specific sequence that functions as a termination site; for most mRNAs transcribed by RNAP II termination is not mediated by a specific termination sequence, but is coupled to polyadenylation. krc 2011-01-27T02:42:23Z GO:0001145|GO:0001148|GO:0001160|GO:0001146 molecular_function owl:Class GO:0039670 biolink:NamedThing viral capsid, turret A turret-like appendage formed at the vertices of an icosahedral capsid. tmpzr1t_l9r_go_relaxed.owl bf 2013-09-25T10:08:14Z cellular_component owl:Class GO:0010304 biolink:NamedThing PSII associated light-harvesting complex II catabolic process The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. tmpzr1t_l9r_go_relaxed.owl LHCII catabolism biological_process owl:Class GO:0000132 biolink:NamedThing establishment of mitotic spindle orientation A cell cycle process that sets the alignment of mitotic spindle relative to other cellular structures. tmpzr1t_l9r_go_relaxed.owl establishment of spindle orientation involved in mitotic cell cycle|mitotic spindle orientation|orienting of mitotic spindle|establishment of spindle orientation during mitosis GO:0030607|GO:0030609 biological_process owl:Class GO:0061380 biolink:NamedThing superior colliculus development The process whose specific outcome is the progression of the superior colliculus over time, from its formation to the mature structure. The superior colliculus is also known as the optic tectum or simply tectum and is a paired structure that forms a major component of the vertebrate midbrain. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:51:00Z biological_process owl:Class GO:0051600 biolink:NamedThing regulation of endocytosis by exocyst localization Any process in which an exocyst is transported to, or maintained in, a specific location that results in the modulation of endocytosis. An exocyst is a protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. tmpzr1t_l9r_go_relaxed.owl relocation of endocytosis|spatial regulation of endocytosis|regulation of site selection of endocytosis|regulation of endocytosis by exocyst localisation biological_process owl:Class GO:0070992 biolink:NamedThing translation initiation complex A ribonucleoprotein complex that contains a ribosome, mRNA, and initiator tRNA; the functional ribosome is at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-30T01:23:52Z cellular_component owl:Class GO:0042509 biolink:NamedThing regulation of tyrosine phosphorylation of STAT protein Any process that modulates the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|regulation of tyrosine phosphorylation of Stat6 protein|regulation of tyrosine phosphorylation of Stat3 protein|regulation of tyrosine phosphorylation of Stat2 protein|regulation of tyrosine phosphorylation of Stat7 protein|regulation of tyrosine phosphorylation of Stat4 protein GO:0042528|GO:0042516|GO:0042522|GO:0042513|GO:0042525|GO:0042510|GO:0042519 biological_process owl:Class GO:1902607 biolink:NamedThing negative regulation of large conductance calcium-activated potassium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of large conductance calcium-activated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl inhibition of large conductance calcium-activated potassium channel activity|down regulation of large conductance KCa channels|downregulation of BK calcium-activated potassium channel activity|negative regulation of BK calcium-activated potassium channel activity|down-regulation of large conductance calcium-activated potassium channel activity|inhibition of BK calcium-activated potassium channel activity|down-regulation of BK KCa channels|down regulation of BK KCa channels|down regulation of BK channel activity|downregulation of large conductance KCa channels|down-regulation of large conductance KCa channels|downregulation of large conductance calcium-activated potassium channel activity|downregulation of BK channel activity|down regulation of BK calcium-activated potassium channel activity|down regulation of large conductance calcium-activated potassium channel activity|downregulation of BK KCa channels|negative regulation of BK channel activity|inhibition of BK KCa channels|down-regulation of BK channel activity|negative regulation of BK KCa channels|inhibition of BK channel activity|negative regulation of large conductance KCa channels|down-regulation of BK calcium-activated potassium channel activity|inhibition of large conductance KCa channels sl 2014-01-02T18:51:12Z biological_process owl:Class GO:0075187 biolink:NamedThing hyphopodium formation The process in which a specialized structure, consisted of stalked, thick-walled, lobed cells of vegetative epiphytic hyphae, is formed, to attach and penetrate the host surface. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl hyphopodium formation on or near host biological_process owl:Class GO:0032609 biolink:NamedThing interferon-gamma production The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon. tmpzr1t_l9r_go_relaxed.owl type II IFN production|type II interferon production|IFNG production|interferon-gamma secretion|interferon-gamma biosynthetic process GO:0072643|GO:0042095 biological_process owl:Class GO:0010998 biolink:NamedThing regulation of translational initiation by eIF2 alpha phosphorylation Any process that modulates the frequency, rate or extent of translation initiation in response to stress by the phosphorylation of eIF2 alpha. tmpzr1t_l9r_go_relaxed.owl eIF2 alpha phosphorylation in response to stress|regulation of translational initiation by eIF2 alpha phosphorylation in response to stress Consider also annotating to 'eukaryotic translation initiation factor 2alpha kinase activity ; GO:0004694'. tb 2009-06-10T11:27:47Z biological_process owl:Class GO:0099625 biolink:NamedThing ventricular cardiac muscle cell membrane repolarization The process in which ions are transported across the plasma membrane of a ventricular cardiac muscle cell such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019093 biolink:NamedThing mitochondrial RNA localization Any process in which mitochondrial RNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of mitochondrial RNA localization|mtRNA localization|mitochondrial RNA localisation biological_process owl:Class GO:0051136 biolink:NamedThing regulation of NK T cell differentiation Any process that modulates the frequency, rate or extent of natural killer T cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of NK T cell development|regulation of NK T-lymphocyte differentiation|regulation of NK T-cell differentiation|regulation of natural killer T cell differentiation|regulation of NT cell differentiation|regulation of natural T cell differentiation|regulation of NKT cell differentiation|regulation of NK T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0001865 biolink:NamedThing NK T cell differentiation The process in which a precursor cell type acquires the specialized features of a NK T cell. tmpzr1t_l9r_go_relaxed.owl NKT cell differentiation|NT cell differentiation|NK T lymphocyte differentiation|natural killer T cell differentiation|NK T cell development|NK T-cell differentiation|NK T-lymphocyte differentiation|natural T cell differentiation Note that NK T cells are a distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0032775 biolink:NamedThing DNA methylation on adenine The covalent transfer of a methyl group to N-6 of adenine in a DNA molecule. tmpzr1t_l9r_go_relaxed.owl adenine methylation biological_process owl:Class GO:0090697 biolink:NamedThing post-embryonic plant organ morphogenesis Morphogenesis, during the post-embryonic phase, of a plant tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-25T17:04:35Z biological_process owl:Class GO:1905534 biolink:NamedThing positive regulation of leucine import across plasma membrane Any process that activates or increases the frequency, rate or extent of leucine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl activation of leucine import into cell|upregulation of leucine import into cell|activation of L-leucine import into cell|up-regulation of leucine import into cell|up-regulation of L-leucine import into cell|positive regulation of leucine import into cell|positive regulation of L-leucine import into cell|up regulation of L-leucine import into cell|up regulation of leucine import into cell|upregulation of L-leucine import into cell vw 2014-06-25T13:10:04Z GO:1903130 biological_process owl:Class GO:0051245 biolink:NamedThing negative regulation of cellular defense response Any process that stops, prevents, or reduces the rate of the cellular defense response. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular defence response|down-regulation of cellular defense response|downregulation of cellular defense response|down regulation of cellular defense response|inhibition of cellular defense response biological_process owl:Class GO:0015746 biolink:NamedThing citrate transport The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033641 biolink:NamedThing modulation by symbiont of host response to pH Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071928 biolink:NamedThing tyramine signaling pathway The series of molecular signals generated as a consequence of tyramine binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl tyramine signalling pathway mah 2010-09-28T01:20:10Z biological_process owl:Class GO:0010754 biolink:NamedThing negative regulation of cGMP-mediated signaling Any process that decreases the rate, frequency or extent of cGMP-mediated signaling. cGMP-mediated signaling is a series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl negative regulation of cGMP-mediated signalling biological_process owl:Class GO:0019934 biolink:NamedThing cGMP-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via cyclic GMP (cGMP). Includes production of cGMP, and downstream effectors that further transmit the signal within the cell. tmpzr1t_l9r_go_relaxed.owl cGMP-mediated signalling biological_process owl:Class GO:0048245 biolink:NamedThing eosinophil chemotaxis The movement of an eosinophil in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044337 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of apoptotic process The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of apoptotic process. tmpzr1t_l9r_go_relaxed.owl canonical Wnt-activated signaling pathway involved in positive regulation of apoptotic process|canonical Wnt receptor signaling pathway involved in positive regulation of apoptotic process|canonical Wnt receptor signaling pathway involved in positive regulation of apoptosis|canonical Wnt receptor signalling pathway involved in positive regulation of apoptosis jl 2010-08-20T03:08:24Z biological_process owl:Class GO:0051466 biolink:NamedThing positive regulation of corticotropin-releasing hormone secretion Any process that activates or increases the frequency, rate or extent of the regulated release of corticotropin-releasing hormone from a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of CRF secretion|activation of corticotropin-releasing hormone secretion|up-regulation of corticotropin-releasing hormone secretion|positive regulation of corticotropin-releasing factor secretion|up regulation of corticotropin-releasing hormone secretion|stimulation of corticotropin-releasing hormone secretion|upregulation of corticotropin-releasing hormone secretion|positive regulation of CRH secretion biological_process owl:Class GO:0043396 biolink:NamedThing corticotropin-releasing hormone secretion The regulated release of corticotropin-releasing hormone (CRH), a polypeptide hormone involved in the stress response. CRH is produced by the hypothalamus and stimulates corticotropic cells of the anterior lobe of the pituitary to produce corticotropic hormone (CTH) and other biologically active substances e.g. 2-endorphin, release of CRH is affected by serum levels of cortisol, by stress and by the sleep/wake cycle. tmpzr1t_l9r_go_relaxed.owl CRH secretion|corticotropin-releasing factor secretion|CRF secretion biological_process owl:Class GO:0140311 biolink:NamedThing protein sequestering activity The selective interaction of a protein with a specific protein, to prevent it from interacting with other partners or inhibiting its localization to other areas of the cell. tmpzr1t_l9r_go_relaxed.owl pg 2019-03-26T14:34:16Z molecular_function owl:Class GO:0033007 biolink:NamedThing negative regulation of mast cell activation involved in immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl negative regulation of mast cell activation during immune response biological_process owl:Class GO:0086015 biolink:NamedThing SA node cell action potential An action potential that occurs in a sinoatrial node cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl SA node cardiac muscle cell action potential|sinoatrial node cardiac muscle cell action potential|SAN cardiac muscle cell action potential|sinus node cardiac muscle cell action potential tb 2011-11-10T08:50:15Z biological_process owl:Class GO:0140540 biolink:NamedThing negative regulation melanotic encapsulation of foreign target Any process that stops, prevents or reduces the frequency, rate or extent of melanotic encapsulation of foreign target. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16749 pg 2020-11-07T08:17:40Z biological_process owl:Class GO:0035011 biolink:NamedThing melanotic encapsulation of foreign target Formation of a multilayered, melanized sheath of cells around a foreign invader. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990936 biolink:NamedThing vascular associated smooth muscle cell dedifferentiation The process in which a vascular smooth muscle cell (a non-striated, elongated, spindle-shaped cell found lining the blood vessels) loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell dedifferentiation tb 2016-03-22T20:25:11Z biological_process owl:Class GO:0046852 biolink:NamedThing positive regulation of bone remodeling Any process that activates or increases the frequency, rate or extent of bone remodeling. tmpzr1t_l9r_go_relaxed.owl activation of bone remodeling|stimulation of bone remodeling|up regulation of bone remodeling|up-regulation of bone remodeling|upregulation of bone remodeling biological_process owl:Class GO:0046849 biolink:NamedThing bone remodeling The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis. tmpzr1t_l9r_go_relaxed.owl bone remodelling Wikipedia:Bone_remodeling biological_process owl:Class GO:0021690 biolink:NamedThing cerebellar molecular layer maturation A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar molecular layer to attain its fully functional state. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021679 biolink:NamedThing cerebellar molecular layer development The process whose specific outcome is the progression of the cerebellar molecular layer nerve over time, from its formation to the mature structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900051 biolink:NamedThing positive regulation of histone exchange Any process that activates or increases the frequency, rate or extent of histone exchange. tmpzr1t_l9r_go_relaxed.owl activation of histone replacement|activation of histone exchange|up-regulation of histone exchange|upregulation of histone chaperone|upregulation of histone replacement|up regulation of histone exchange|activation of histone chaperone|up-regulation of histone replacement|positive regulation of histone replacement|up regulation of histone replacement|up-regulation of histone chaperone|upregulation of histone exchange|up regulation of histone chaperone|positive regulation of histone chaperone se 2012-01-19T10:59:12Z biological_process owl:Class GO:0060608 biolink:NamedThing cell-cell adhesion involved in neural tube closure The attachment of one cell to another cell along the edges of two epithelial folds, giving rise to the lumen of the neural tube. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T09:56:14Z biological_process owl:Class GO:0001843 biolink:NamedThing neural tube closure The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0100026 biolink:NamedThing positive regulation of DNA repair by transcription from RNA polymerase II promoter Any transcription from RNA polymerase II promoter process that positively regulates DNA repair. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:0003088 biolink:NamedThing positive regulation of the force of heart contraction by circulating epinephrine The process in which the secretion of epinephrine into the bloodstream modulates the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart contraction by circulating epinephrine|increased force of heart contraction by epinephrine in the bloodstream|positive regulation of heart contraction by circulating adrenaline|increased force of heart contraction by circulating adrenaline biological_process owl:Class GO:0003089 biolink:NamedThing positive regulation of the force of heart contraction by circulating epinephrine-norepinephrine Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream. tmpzr1t_l9r_go_relaxed.owl increased force of heart contraction by circulating epinephrine-norepinephrine|increased force of heart contraction by epinephrine-norepinephrine in the blood stream|increased force of heart contraction by circulating adrenaline-noradrenaline|positive regulation of heart contraction by circulating adrenaline-noradrenaline|positive regulation of heart contraction by circulating epinephrine-norepinephrine biological_process owl:Class GO:0070314 biolink:NamedThing G1 to G0 transition A cell cycle arrest process that results in arrest during G1 phase, whereupon the cell enters a specialized resting state known as G0 or quiescence. tmpzr1t_l9r_go_relaxed.owl stationary phase|establishment of cell quiescence|cell cycle quiescence|G1/G0 transition biological_process owl:Class GO:0051568 biolink:NamedThing histone H3-K4 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3 K4 methylation|histone lysine H3 K4 methylation|histone H3K4me biological_process owl:Class GO:0120224 biolink:NamedThing larynx development The biological process whose specific outcome is the progression of a larynx from an initial condition to its mature state. This process begins with the formation of the larynx and ends with the mature structure. A larynx is a continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration. tmpzr1t_l9r_go_relaxed.owl krc 2020-02-24T17:13:10Z biological_process owl:Class GO:0090050 biolink:NamedThing positive regulation of cell migration involved in sprouting angiogenesis Any process that increases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-07T10:41:09Z biological_process owl:Class GO:0002042 biolink:NamedThing cell migration involved in sprouting angiogenesis The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900293 biolink:NamedThing positive regulation of galactotriose transport Any process that activates or increases the frequency, rate or extent of galactotriose transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of galactotriose transport|up regulation of galactotriose transport|upregulation of galactotriose transport|activation of galactotriose transport tt 2012-04-05T07:26:28Z biological_process owl:Class GO:0015592 biolink:NamedThing methylgalactoside transmembrane transporter activity Enables the transfer of methylgalactoside from one side of a membrane to the other. Methylgalactoside is a compound in which the H of the OH group on carbon-1 of galactose is replaced by a methyl group. tmpzr1t_l9r_go_relaxed.owl galactose/glucose (methylgalactoside) porter activity molecular_function owl:Class GO:0015765 biolink:NamedThing methylgalactoside transport The directed movement of methylgalactoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Methylgalactoside is a compound in which the H of the OH group on carbon-1 of galactose is replaced by a methyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904395 biolink:NamedThing positive regulation of skeletal muscle acetylcholine-gated channel clustering Any process that activates or increases the frequency, rate or extent of skeletal muscle acetylcholine-gated channel clustering. tmpzr1t_l9r_go_relaxed.owl up-regulation of skeletal muscle AChR clustering|positive regulation of skeletal muscle AChR clustering|upregulation of skeletal muscle acetylcholine-gated channel clustering|activation of skeletal muscle AChR clustering|up-regulation of skeletal muscle acetylcholine-gated channel clustering|up-regulation of skeletal muscle nicotinic acetylcholine receptor clustering|positive regulation of skeletal muscle nicotinic acetylcholine receptor clustering|up regulation of skeletal muscle AChR clustering|up regulation of skeletal muscle acetylcholine-gated channel clustering|activation of skeletal muscle acetylcholine-gated channel clustering|up regulation of skeletal muscle nicotinic acetylcholine receptor clustering|activation of skeletal muscle nicotinic acetylcholine receptor clustering|upregulation of skeletal muscle AChR clustering|upregulation of skeletal muscle nicotinic acetylcholine receptor clustering sl 2015-06-23T19:23:37Z biological_process owl:Class GO:0098027 biolink:NamedThing virus tail, sheath The external contractile envelope of the tail of some viruses. Its contraction ensures ejection of the virus DNA into the host cytoplasm. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail sheath bm 2012-07-19T14:23:27Z cellular_component owl:Class GO:1902758 biolink:NamedThing bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process The chemical reactions and pathways resulting in the formation of bis(molybdopterin guanine dinucleotide)molybdenum. tmpzr1t_l9r_go_relaxed.owl bis(molybdopterin guanine dinucleotide)molybdenum biosynthesis|bis(molybdopterin guanine dinucleotide)molybdenum synthesis|bis(molybdopterin guanine dinucleotide)molybdenum formation|bis-Mo-molybdopterin-guanine dinucleotide cofactor biosynthetic process|bis(molybdopterin guanine dinucleotide)molybdenum anabolism MetaCyc:PWY-5964 dph 2014-03-06T13:58:18Z GO:0061600 biological_process owl:Class GO:0061603 biolink:NamedThing molybdenum cofactor guanylyltransferase activity Catalysis of the reaction GTP + molybdenum cofactor = diphosphate + guanylyl molybdenum cofactor. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.77|RHEA:34243 dph 2014-02-10T14:54:36Z molecular_function owl:Class GO:0002472 biolink:NamedThing macrophage antigen processing and presentation The process in which a macrophage expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902418 biolink:NamedThing (+)-abscisic acid D-glucopyranosyl ester transmembrane transport The process in which (+)-abscisic acid D-glucopyranosyl este is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl abscisic acid glucosyl ester transmembrane transport|ABA-GE transmembrane transport tb 2013-09-16T22:37:20Z biological_process owl:Class GO:1904283 biolink:NamedThing negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I Any process that stops, prevents or reduces the frequency, rate or extent of antigen processing and presentation of endogenous peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl down-regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|downregulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|downregulation of endogenous peptide antigen processing and presentation via MHC class I|down-regulation of endogenous peptide antigen processing and presentation via MHC class I|negative regulation of endogenous peptide antigen processing and presentation via MHC class I|inhibition of endogenous peptide antigen processing and presentation via MHC class I|down regulation of endogenous peptide antigen processing and presentation via MHC class I|down regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|inhibition of antigen processing and presentation of endogenous peptide antigen via MHC class I rl 2015-06-04T12:05:34Z biological_process owl:Class GO:0072677 biolink:NamedThing eosinophil migration The movement of an eosinophil within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T03:39:31Z biological_process owl:Class GO:1900291 biolink:NamedThing regulation of galactotriose transport Any process that modulates the frequency, rate or extent of galactotriose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T07:25:58Z biological_process owl:Class GO:0050823 biolink:NamedThing peptide antigen stabilization Any process involved in maintaining the structure and integrity of a peptide antigen and preventing it from being degraded. tmpzr1t_l9r_go_relaxed.owl peptide antigen stabilization activity biological_process owl:Class GO:0000464 biolink:NamedThing endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage within Internal Transcribed Spacer 1 (ITS1) upstream of the 5.8S rRNA derived from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. In S. cerevisiae, this endonucleolytic cleavage within ITS1 initiates the maturation of the LSU and the 5.8S rRNAs. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage at A3 biological_process owl:Class GO:0015161 biolink:NamedThing lipid III floppase activity Enables the transbilayer of capsular-polysaccharides (Und-PP-GlcNAc-ManNAcA-Fuc4NAc (lipid III)) from the inner to the outer leaflet of the cytoplasmic membrane during the assembly of ECA. Capsular polysaccharides make up the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl undecaprenol-pyrophosphate O-antigen flippase activity|capsular polysaccharide transmembrane transporter activity|capsule polysaccharide transporter activity TC:2.A.66.2.12|TC:2.A.66.2.3 molecular_function owl:Class GO:0060777 biolink:NamedThing compound leaf morphogenesis The leaf morphogenesis process that results in the shaping of a compound leaf. A compound leaf is a leaf having two or more distinct leaflets that are evident as such from early in development. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T07:12:30Z biological_process owl:Class GO:1903145 biolink:NamedThing actin filament of cell cortex of cell tip Any actin filament that is part of a cell cortex of cell tip. tmpzr1t_l9r_go_relaxed.owl microfilament of cell cortex of cell end|actin filament of cell cortex of cell end|microfilament of cell cortex of cell tip vw 2014-07-06T16:24:01Z cellular_component owl:Class GO:0051285 biolink:NamedThing cell cortex of cell tip The region directly beneath the plasma membrane at the cell tip. The cell tip is the region at either end of the longest axis of a cylindrical or elongated cell. tmpzr1t_l9r_go_relaxed.owl cell cortex of cell end cellular_component owl:Class GO:0021814 biolink:NamedThing cell motility involved in cerebral cortex radial glia guided migration The movement of a cell along the process of a radial glial cell involved in cerebral cortex glial-mediated radial migration. tmpzr1t_l9r_go_relaxed.owl cell locomotion involved in cerebral cortex glial-mediated radial migration|cell locomotion involved in cerebral cortex radial glia guided migration biological_process owl:Class GO:0021801 biolink:NamedThing cerebral cortex radial glia-guided migration The radial migration of neuronal or glial precursor cells along radial glial cells during the development of the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl cerebral cortex radial glia-dependent cell migration|cerebral cortex radial glia guided migration|glial-guided locomotion biological_process owl:Class GO:0062029 biolink:NamedThing positive regulation of stress granule assembly Any process that starts or increases the rate, frequency or extent of stress-granule assembly, the aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-16T19:17:10Z biological_process owl:Class GO:0097694 biolink:NamedThing establishment of RNA localization to telomere The directed movement of RNA to a specific location in the telomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl establishment of RNA localisation to telomere pr 2015-12-22T09:33:43Z biological_process owl:Class GO:0043668 biolink:NamedThing exine The outer layer of the pollen grain wall which is composed primarily of sporopollenin. tmpzr1t_l9r_go_relaxed.owl Note that the exine is highly resistant to strong acids and bases. cellular_component owl:Class GO:0002832 biolink:NamedThing negative regulation of response to biotic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of a response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl downregulation of response to biotic stimulus|inhibition of response to biotic stimulus|down regulation of response to biotic stimulus|down-regulation of response to biotic stimulus Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:0097545 biolink:NamedThing axonemal outer doublet Part of an axoneme consisting in a doublet microtubule. Nine of these outer doublets form the 9+0 axoneme, while the 9+2 axoneme also contains a central pair. Dynein arms attached to the doublets provide the mechanism of movement of the cilium. tmpzr1t_l9r_go_relaxed.owl axoneme outer doublet|outer-doublet microtubules|outer doublet pr 2013-12-12T11:19:29Z cellular_component owl:Class GO:0006386 biolink:NamedThing termination of RNA polymerase III transcription The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription termination|transcription termination from Pol III promoter|RNA polymerase III transcription termination factor activity|transcription termination from RNA polymerase III promoter GO:0019225 biological_process owl:Class GO:0051146 biolink:NamedThing striated muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle. tmpzr1t_l9r_go_relaxed.owl voluntary muscle cell differentiation biological_process owl:Class GO:0003380 biolink:NamedThing establishment or maintenance of cytoskeleton polarity involved in gastrulation Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures that contribute to the cell polarity of a migrating ameboid cell taking part in gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T07:10:57Z biological_process owl:Class GO:0005304 biolink:NamedThing L-valine transmembrane transporter activity Enables the transfer of L-valine from one side of a membrane to the other. L-valine is 2-amino-3-methylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl isoleucine/valine:sodium symporter activity|valine/tyrosine/tryptophan permease activity|leucine/isoleucine/valine porter activity|L-valine transporter activity|leucine/valine/isoleucine permease activity molecular_function owl:Class GO:0071558 biolink:NamedThing histone H3-tri/di-methyl-lysine-27 demethylase activity Catalysis of the removal of a methyl group from a tri- or a dimethyl-lysine residue at position 27 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3K27me2 demethylase activity|histone demethylase activity (H3-K27 specific)|histone H3K27me3 demethylase activity Reactome:R-HSA-5617887|Reactome:R-HSA-5617431|RHEA:60224|Reactome:R-HSA-3222593|EC:1.14.11.68 mah 2010-01-15T11:33:17Z molecular_function owl:Class GO:0071557 biolink:NamedThing histone H3-K27 demethylation The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl H3K27 demethylation mah 2010-01-15T10:59:50Z biological_process owl:Class GO:1905161 biolink:NamedThing protein localization to phagocytic vesicle A process in which a protein is transported to, or maintained in, a location within a phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl protein recruitment to phagosome|protein localization in phagocytic vesicle|protein localisation to phagocytic vesicle|protein localisation to phagosome|protein localisation in phagocytic vesicle bf 2016-04-25T15:05:13Z biological_process owl:Class GO:0042800 biolink:NamedThing histone methyltransferase activity (H3-K4 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 4) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 4). This reaction is the addition of a methyl group onto lysine at position 4 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone lysine N-methyltransferase activity (H3-K4 specific)|histone methylase activity (H3-K4 specific)|histone H3 lysine 4-specific methyltransferase activity Reactome:R-HSA-8937050|Reactome:R-HSA-1214188|Reactome:R-HSA-8936621|Reactome:R-HSA-8865498|Reactome:R-HSA-8936481|Reactome:R-HSA-8937016|Reactome:R-HSA-3364026 Note that in some species, the methyl group may be added to a lysine in a slightly different position of the histone H3 protein, but that this term still applies. molecular_function owl:Class GO:0097566 biolink:NamedThing left tetrad Set of four basal bodies found in Giardia species (trophozoite stage). It comprises the left lateral basal body pair and the left middle basal body pair (i.e. the anterior, ventral, caudal and posteriolateral basal bodies located to the right of the left nucleus of the trophozoite when viewed dorsally). tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:30:43Z cellular_component owl:Class GO:0001955 biolink:NamedThing blood vessel maturation A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071940 biolink:NamedThing fungal-type cell wall assembly The aggregation, arrangement and bonding together of a set of components to form a fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall formation mah 2010-09-30T04:59:36Z biological_process owl:Class GO:2000457 biolink:NamedThing positive regulation of T-helper 17 cell extravasation Any process that activates or increases the frequency, rate or extent of T-helper 17 cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:51:00Z biological_process owl:Class GO:0030703 biolink:NamedThing eggshell formation Construction of the eggshell, a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055108 biolink:NamedThing Golgi to transport vesicle transport The directed movement of proteins from the Golgi to a transport vesicle. Continuously secreted proteins are sorted into transport vesicles that fuse with the plasma membrane, releasing their contents by exocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106128 biolink:NamedThing negative regulation of store-operated calcium entry Any process that stops, prevents or reduces the frequency, rate or extent of store-operated calcium entry. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-10T18:59:12Z biological_process owl:Class GO:0097486 biolink:NamedThing multivesicular body lumen The volume enclosed by the outermost membrane of a multivesicular body. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-08T20:32:56Z cellular_component owl:Class GO:0002358 biolink:NamedThing B cell homeostatic proliferation The non-specific expansion of B cell populations within a whole or part of an organism to reach to a total number of B cells which will then remain stable over time in the absence of an external stimulus. tmpzr1t_l9r_go_relaxed.owl B lymphocyte homeostatic proliferation|B-cell homeostatic proliferation|B-lymphocyte homeostatic proliferation biological_process owl:Class GO:0042592 biolink:NamedThing homeostatic process Any biological process involved in the maintenance of an internal steady state. tmpzr1t_l9r_go_relaxed.owl positive regulation of homeostatic process|regulation of homeostatic process|activation of homeostatic process|homeostasis|negative regulation of homeostatic process|inhibition of homeostatic process GO:0032846|GO:0032844|GO:0032845 biological_process owl:Class GO:1900951 biolink:NamedThing negative regulation of 18-methylnonadec-1-ene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of 18-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of 18-methylnonadec-1-ene biosynthetic process|down regulation of 18-methylnonadec-1-ene formation|inhibition of 18-methylnonadec-1-ene synthesis|down-regulation of 18-methylnonadec-1-ene formation|down regulation of 18-methylnonadec-1-ene biosynthetic process|downregulation of 18-methylnonadec-1-ene anabolism|downregulation of 18-methylnonadec-1-ene synthesis|down regulation of 18-methylnonadec-1-ene biosynthesis|down-regulation of 18-methylnonadec-1-ene synthesis|inhibition of 18-methylnonadec-1-ene anabolism|down regulation of 18-methylnonadec-1-ene anabolism|negative regulation of 18-methylnonadec-1-ene anabolism|downregulation of 18-methylnonadec-1-ene biosynthetic process|down-regulation of 18-methylnonadec-1-ene biosynthesis|negative regulation of 18-methylnonadec-1-ene biosynthesis|downregulation of 18-methylnonadec-1-ene biosynthesis|inhibition of 18-methylnonadec-1-ene biosynthetic process|down-regulation of 18-methylnonadec-1-ene anabolism|downregulation of 18-methylnonadec-1-ene formation|inhibition of 18-methylnonadec-1-ene formation|inhibition of 18-methylnonadec-1-ene biosynthesis|negative regulation of 18-methylnonadec-1-ene synthesis|down regulation of 18-methylnonadec-1-ene synthesis|negative regulation of 18-methylnonadec-1-ene formation tt 2012-06-14T03:23:55Z biological_process owl:Class GO:1900369 biolink:NamedThing negative regulation of RNA interference Any process that stops, prevents or reduces the frequency, rate or extent of RNA interference. tmpzr1t_l9r_go_relaxed.owl down regulation of RNAi|inhibition of RNAi|inhibition of posttranscriptional gene silencing by siRNA|downregulation of RNA interference|down-regulation of RNA interference|downregulation of posttranscriptional gene silencing by siRNA|down regulation of posttranscriptional gene silencing by siRNA|down regulation of RNA interference|negative regulation of RNAi|inhibition of RNA interference|negative regulation of posttranscriptional gene silencing by siRNA|downregulation of RNAi|down-regulation of RNAi|down-regulation of posttranscriptional gene silencing by siRNA kmv 2012-04-13T08:28:50Z biological_process owl:Class GO:0042779 biolink:NamedThing tRNA 3'-trailer cleavage Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both. tmpzr1t_l9r_go_relaxed.owl tRNA 3'-end cleavage|removal of tRNA 3'-trailer sequence biological_process owl:Class GO:0042780 biolink:NamedThing tRNA 3'-end processing The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA. tmpzr1t_l9r_go_relaxed.owl tRNA 3' processing biological_process owl:Class GO:0010220 biolink:NamedThing positive regulation of vernalization response Any process that activates or induces the rate of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures. tmpzr1t_l9r_go_relaxed.owl stimulation of vernalization response|up regulation of vernalization response|upregulation of vernalization response|activation of vernalization response|up-regulation of vernalization response biological_process owl:Class GO:0010048 biolink:NamedThing vernalization response The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032634 biolink:NamedThing interleukin-5 production The appearance of interleukin-5 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-5 production|interleukin-5 biosynthetic process|interleukin-5 secretion GO:0072603|GO:0042225 biological_process owl:Class GO:0097567 biolink:NamedThing right tetrad Set of four basal bodies found in Giardia species (trophozoite stage). It comprises the right lateral basal body pair and the right middle basal body pair (i.e. the anterior, ventral, caudal and posteriolateral basal bodies located to the left of the right nucleus of the trophozoite when viewed dorsally). tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:32:33Z cellular_component owl:Class GO:0150067 biolink:NamedThing regulation of tubulin deacetylase activity Any process that modulates the frequency, rate or extent of tubulin deacetylase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-24T10:29:49Z biological_process owl:Class GO:0019533 biolink:NamedThing cellobiose transport The directed movement of cellobiose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010780 biolink:NamedThing meiotic DNA double-strand break formation involved in reciprocal meiotic recombination The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034456 biolink:NamedThing UTP-C complex A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Rrp7p, Utp22p, Ckb1p, Cka1p, Ckb2p and Cka2p. tmpzr1t_l9r_go_relaxed.owl Rrp7p-containing subcomplex of 90S preribosome Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0061984 biolink:NamedThing catabolite repression A process in which the presence of one nutrient source leads to a decrease in the frequency, rate, or extent of processes involved in the metabolism of other nutrient sources. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T16:34:14Z biological_process owl:Class GO:0021607 biolink:NamedThing accessory nerve morphogenesis The process in which the anatomical structure of the accessory nerve is generated and organized. The spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve. tmpzr1t_l9r_go_relaxed.owl CN XI morphogenesis biological_process owl:Class GO:0000407 biolink:NamedThing phagophore assembly site Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction. tmpzr1t_l9r_go_relaxed.owl PAS|pre-autophagosomal structure|perivacuolar space cellular_component owl:Class GO:0015346 biolink:NamedThing ferric triacetylfusarinine C:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ferric triacetylfusarinine C(out) + H+(out) = ferric triacetylfusarinine C(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl ferric triacetylfusarinine C:hydrogen symporter activity molecular_function owl:Class GO:0032258 biolink:NamedThing cytoplasm to vacuole transport by the Cvt pathway A cytoplasm to vacuole targeting pathway that uses machinery common with autophagy. The Cvt vesicle is formed when the receptor protein, Atg19, binds to the complexes of the target protein (aminopeptidase or alpha-mannosidase homododecamers), forming the Cvt complex. Atg11 binds to Atg9 and transports the Cvt complex to the pre-autophagosome (PAS). The phagophore membrane expands around the Cvt complex (excluding bulk cytoplasm) forming the Cvt vesicle. This pathway is mostly observed in yeast. tmpzr1t_l9r_go_relaxed.owl cytoplasm-to-vacuole targeting|protein localization by the Cvt pathway|cytoplasm to vacuole targeting biological_process owl:Class GO:0005484 biolink:NamedThing SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. tmpzr1t_l9r_go_relaxed.owl v-SNARE activity|SNAP-25|Q-SNARE activity|SNARE|t-SNARE activity|R-SNARE activity GO:0005485|GO:0005486 molecular_function owl:Class GO:0021630 biolink:NamedThing olfactory nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the olfactory nerve to attain its fully functional state. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem. tmpzr1t_l9r_go_relaxed.owl CN I maturation biological_process owl:Class GO:0021553 biolink:NamedThing olfactory nerve development The process whose specific outcome is the progression of the olfactory nerve over time, from its formation to the mature structure. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem. tmpzr1t_l9r_go_relaxed.owl CN 1 development|cranial nerve 1 development|cranial nerve I development biological_process owl:Class GO:0052721 biolink:NamedThing regulation of apurinic/apyrimidinic endodeoxyribonuclease activity Any process that modulates the frequency, rate or extent of apurinic/apyrimidinic (AP) endodeoxyribonuclease activity, the hydrolysis of ester linkages immediately 5' to an AP (also called abasic) site within a deoxyribonucleic acid molecule by creating internal breaks, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. tmpzr1t_l9r_go_relaxed.owl regulation of apyrimidinic endodeoxyribonuclease activity|regulation of apurinic endodeoxyribonuclease activity|regulation of AP endodeoxyribonuclease activity|regulation of abasic endodeoxyribonuclease activity biological_process owl:Class GO:0052720 biolink:NamedThing class II DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the hydrolysis of ester linkages immediately 5' to an apurinic/apyrimidinic (AP; also called abasic) site within a deoxyribonucleic acid molecule by creating internal breaks, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. tmpzr1t_l9r_go_relaxed.owl class II DNA-(apurinic or apyrimidinic site) lyase activity https://github.com/geneontology/go-ontology/issues/13409 Class II AP endonuclease is a nuclease, but not Class I, III and IV. pg 2017-07-24T11:46:03Z GO:0140079 molecular_function owl:Class GO:1902756 biolink:NamedThing sulfurated eukaryotic molybdenum cofactor(2-) biosynthetic process The chemical reactions and pathways resulting in the formation of sulfurated eukaryotic molybdenum cofactor(2-). tmpzr1t_l9r_go_relaxed.owl sulfurated eukaryotic molybdenum cofactor(2-) formation|sulfurated eukaryotic molybdenum cofactor(2-) biosynthesis|sulfurated eukaryotic molybdenum cofactor(2-) anabolism|sulfurated eukaryotic molybdenum cofactor(2-) synthesis MetaCyc:PWY-6476|Reactome:R-HSA-947581 dph 2014-03-05T23:29:20Z biological_process owl:Class GO:0008265 biolink:NamedThing Mo-molybdopterin cofactor sulfurase activity Catalysis of the sulfurylation of the desulfo form of molybdenum cofactor (MoCo), a cofactor required for the activity of some enzymes, such as aldehyde oxidase. tmpzr1t_l9r_go_relaxed.owl Mo-molybdopterin cofactor sulphurase activity|molybdopterin synthase sulfurylase activity|molybdopterin cofactor sulfurase activity EC:2.8.1.9|Reactome:R-HSA-947499 molecular_function owl:Class GO:0045801 biolink:NamedThing positive regulation of chitin-based cuticle tanning Any process that activates or increases the frequency, rate or extent of chitin-based cuticular tanning. tmpzr1t_l9r_go_relaxed.owl stimulation of cuticle tanning|up-regulation of cuticle tanning|upregulation of cuticle tanning|up regulation of cuticle tanning|positive regulation of cuticle tanning|positive regulation of cuticle hardening|activation of cuticle tanning biological_process owl:Class GO:0007593 biolink:NamedThing chitin-based cuticle sclerotization The process of hardening of a chitin-based cuticle. tmpzr1t_l9r_go_relaxed.owl chitin-based cuticle tanning|cuticle hardening GO:0045452 biological_process owl:Class GO:0090390 biolink:NamedThing phagosome acidification involved in apoptotic cell clearance Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion, and occurs as a part of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:57:39Z biological_process owl:Class GO:0032391 biolink:NamedThing photoreceptor connecting cilium The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone. tmpzr1t_l9r_go_relaxed.owl photoreceptor cilium cellular_component owl:Class GO:0097733 biolink:NamedThing photoreceptor cell cilium A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment. tmpzr1t_l9r_go_relaxed.owl photoreceptor cilium pr 2016-09-30T10:50:11Z cellular_component owl:Class GO:0007520 biolink:NamedThing myoblast fusion A process in which non-proliferating myoblasts fuse to existing fibers or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030668 biolink:NamedThing merozoite dense granule membrane The lipid bilayer surrounding a dense granule of the type found in apicomplexan parasites. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0020026 biolink:NamedThing merozoite dense granule Electron-dense organelle with a granular internal matrix found throughout the merozoite life cycle stage of apicomplexan parasites; contains proteins destined to be secreted into the parasitophorous vacuole following parasite invasion of a host cell. tmpzr1t_l9r_go_relaxed.owl dense body cellular_component owl:Class GO:0070211 biolink:NamedThing Snt2C complex A histone deacetylase complex that is part of the chromatin remodeling machinery. In Saccharomyces cerevisiae this complex contains Snt2p, Ecm5p and Rpd3p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044735 biolink:NamedThing envenomation resulting in negative regulation of acid-sensing ion channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant negative regulation in the activity of an acid-sensing ion channel (ASIC) in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in negative regulation of ASIC channel activity in other organism jl 2012-11-06T16:05:58Z biological_process owl:Class GO:0044738 biolink:NamedThing negative regulation of acid-sensing ion channel in other organism Any process in which an organism negatively regulates the activity of a voltage-gated sodium channel in another organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of ASIC channel in other organism jl 2012-11-06T16:55:23Z biological_process owl:Class GO:0051711 biolink:NamedThing negative regulation of killing of cells of other organism Any process that stops, prevents, or reduces the frequency, rate or extent of the killing by an organism of cells in another organism. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of programmed cell death in other organism involved in symbiotic interaction|down regulation of killing of cells of another organism|downregulation of killing of cells of another organism|down-regulation of killing of cells of another organism|inhibition of killing of cells of another organism|negative regulation of killing of cells of another organism https://github.com/geneontology/go-ontology/issues/20287 GO:0052490 biological_process owl:Class GO:0100067 biolink:NamedThing positive regulation of spinal cord association neuron differentiation by canonical Wnt signaling pathway Any canonical Wnt signaling pathway process that positively_regulates spinal cord association neuron differentiation. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z biological_process owl:Class GO:2000877 biolink:NamedThing negative regulation of oligopeptide transport Any process that stops, prevents or reduces the frequency, rate or extent of oligopeptide transport. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-27T01:54:07Z biological_process owl:Class GO:0086054 biolink:NamedThing bundle of His cell to Purkinje myocyte communication by electrical coupling The process that mediates signaling interactions between a bundle of His cardiac muscle cell and a Purkinje myocyte by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl bundle of His cardiac muscle cell to Purkinje myocyte communication by electrical coupling dph 2011-11-17T10:46:43Z biological_process owl:Class GO:0032638 biolink:NamedThing interleukin-9 production The appearance of interleukin-9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-9 secretion|interleukin-9 biosynthetic process|IL-9 production GO:0072607|GO:0042229 biological_process owl:Class GO:0003994 biolink:NamedThing aconitate hydratase activity Catalysis of the reaction: citrate = isocitrate. The reaction occurs in two steps: (1) citrate = cis-aconitate + H2O, (2) cis-aconitate + H2O = isocitrate. This reaction is the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate. tmpzr1t_l9r_go_relaxed.owl citrate(isocitrate) hydro-lyase activity|cis-aconitase activity|citrate hydro-lyase activity|citrate(isocitrate) hydro-lyase (cis-aconitate-forming)|aconitase activity Reactome:R-HSA-70971|Reactome:R-HSA-5690911|EC:4.2.1.3|RHEA:10336|Reactome:R-HSA-450975 This is a process composed of two reactions represented by the terms 'GO:0052632 : citrate hydro-lyase (cis-aconitate-forming) activity' and 'GO:0052633 : isocitrate hydro-lyase (cis-aconitate-forming) activity'. molecular_function owl:Class GO:0061197 biolink:NamedThing fungiform papilla morphogenesis The process in which the anatomical structures of the fungiform papilla are generated and organized. The fungiform papilla is a mushroom-shaped papilla of the tongue. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T12:26:40Z biological_process owl:Class GO:0061196 biolink:NamedThing fungiform papilla development The progression of the fungiform papilla over time, from its formation to the mature structure. The fungiform papilla is a mushroom-shaped papilla of the tongue. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T12:23:48Z biological_process owl:Class GO:0071935 biolink:NamedThing octopamine signaling pathway involved in response to food The series of molecular signals initiated by binding of octopamine to a receptor on the surface of the target cell that contributes to a response to a food stimulus. tmpzr1t_l9r_go_relaxed.owl octopamine signalling pathway involved in response to food mah 2010-09-30T11:55:59Z biological_process owl:Class GO:0120085 biolink:NamedThing transposon integration involved in RNA-mediated transposition Any transposon integration that contributes to a process of RNA-mediated transposition. tmpzr1t_l9r_go_relaxed.owl retrotransposon integration krc 2017-07-07T22:17:32Z biological_process owl:Class GO:0097632 biolink:NamedThing extrinsic component of phagophore assembly site membrane The component of the phagophore assembly site membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl phagophore assembly site peripheral membrane|extrinsic to phagophore assembly site membrane|extrinsic component of pre-autophagosomal structure membrane cellular_component owl:Class GO:0050785 biolink:NamedThing advanced glycation end-product receptor activity Combining with advanced glycation end-products and transmitting the signal to initiate a change in cell activity. Advanced glycation end-products (AGEs) form from a series of chemical reactions after an initial glycation event (a non-enzymatic reaction between reducing sugars and free amino groups of proteins). tmpzr1t_l9r_go_relaxed.owl RAGE activity|AGE receptor activity molecular_function owl:Class GO:1903574 biolink:NamedThing negative regulation of cellular response to amino acid starvation Any process that stops, prevents or reduces the frequency, rate or extent of a cellular response to amino acid starvation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to amino acid starvation|inhibition of cellular response to amino acid starvation|down regulation of cellular response to amino acid starvation|downregulation of cellular response to amino acid starvation bf 2014-10-27T16:21:02Z biological_process owl:Class GO:0034198 biolink:NamedThing cellular response to amino acid starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids. tmpzr1t_l9r_go_relaxed.owl GAAC response|general amino acid control response biological_process owl:Class GO:0075239 biolink:NamedThing zoospore formation The process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060323 biolink:NamedThing head morphogenesis The process in which the anatomical structures of the head are generated and organized. The head is the anterior-most division of the body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032835 biolink:NamedThing glomerulus development The progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney. The glomerulus is part of the nephron and is restricted to one body segment. tmpzr1t_l9r_go_relaxed.owl glomerular development biological_process owl:Class GO:0005701 biolink:NamedThing polytene chromosome chromocenter A region at which the centric regions of polytene chromosomes are joined together. tmpzr1t_l9r_go_relaxed.owl polytene chromosome chromocentre cellular_component owl:Class GO:0005700 biolink:NamedThing polytene chromosome A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Polytene_chromosome cellular_component owl:Class GO:0005589 biolink:NamedThing collagen type VI trimer A collagen heterotrimer containing type VI alpha chains in alpha1(VI)alpha2(VI)alpha3(VI) trimers; type VI collagen triple helices associate to form beaded fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098647 biolink:NamedThing collagen beaded filament A supramolecular assembly of collagen trimers with a 'beads on a string'-like structure. tmpzr1t_l9r_go_relaxed.owl beads on a string cellular_component owl:Class GO:1903764 biolink:NamedThing regulation of potassium ion export across plasma membrane Any process that modulates the frequency, rate or extent of potassium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of potassium ion export|regulation of potassium export across plasma membrane|regulation of potassium export rl 2013-07-17T16:39:53Z GO:1902302 biological_process owl:Class GO:0061760 biolink:NamedThing antifungal innate immune response An defense response against a fungus mediated through an innate immune response. An innate immune response is mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl dph 2016-03-07T08:53:08Z biological_process owl:Class GO:0012510 biolink:NamedThing trans-Golgi network transport vesicle membrane The lipid bilayer surrounding a vesicle transporting substances between the trans-Golgi network and other parts of the cell. tmpzr1t_l9r_go_relaxed.owl TGN transport vesicle membrane|trans-Golgi network constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0017038 biolink:NamedThing protein import The targeting and directed movement of proteins into a cell or organelle. Not all import involves an initial targeting event. tmpzr1t_l9r_go_relaxed.owl protein uptake biological_process owl:Class GO:0044160 biolink:NamedThing host thylakoid membrane The pigmented membrane of any host thylakoid. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:17:31Z cellular_component owl:Class GO:0044159 biolink:NamedThing host thylakoid A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:15:34Z cellular_component owl:Class GO:2000642 biolink:NamedThing negative regulation of early endosome to late endosome transport Any process that stops, prevents or reduces the frequency, rate or extent of early endosome to late endosome transport. tmpzr1t_l9r_go_relaxed.owl vk 2011-04-21T11:20:06Z biological_process owl:Class GO:0060667 biolink:NamedThing branch elongation involved in salivary gland morphogenesis The differential growth of the salivary branches along their axis, resulting in the growth of a branch. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-01T09:42:13Z biological_process owl:Class GO:0060739 biolink:NamedThing mesenchymal-epithelial cell signaling involved in prostate gland development Any process that mediates the transfer of information from a mesenchymal cell to an epithelial cell where it is received and interpreted contributing to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl mesenchymal-epithelial cell signalling involved in prostate gland development dph 2009-06-15T09:35:08Z biological_process owl:Class GO:0047270 biolink:NamedThing lipopolysaccharide glucosyltransferase II activity Catalysis of the reaction: lipopolysaccharide + UDP-D-glucose = D-glucosyl-lipopolysaccharide + UDP. tmpzr1t_l9r_go_relaxed.owl LPS glucosyltransferase II activity|UDP-glucose:galactosyl-lipopolysaccharide alpha-D-glucosyltransferase activity|UDPglucose:galactosyl-lipopolysaccharide alpha-D-glucosyltransferase activity|uridine diphosphoglucose-galactosylpolysaccharide glucosyltransferase activity EC:2.4.1.73|MetaCyc:2.4.1.73-RXN molecular_function owl:Class GO:0036337 biolink:NamedThing Fas signaling pathway A series of molecular signals initiated by the binding of a ligand to the receptor Fas on the surface of the cell, and ending with regulation of a downstream cellular process, e.g. transcription. Fas is a death domain-containing member of the tumor necrosis factor receptor (TNFR) superfamily. tmpzr1t_l9r_go_relaxed.owl FAS ligand-Fas signaling pathway|Fas receptor signaling pathway|CD95 signaling pathway|FasL signaling pathway|FasR signaling pathway|Apo-1 signaling pathway|Fas-FasL signaling pathway bf 2012-09-05T10:28:11Z biological_process owl:Class GO:0097038 biolink:NamedThing perinuclear endoplasmic reticulum The portion of endoplasmic reticulum, the intracellular network of tubules and cisternae, that occurs near the nucleus. The lumen of the perinuclear endoplasmic reticulum is contiguous with the nuclear envelope lumen (also called perinuclear space), the region between the inner and outer nuclear membranes. tmpzr1t_l9r_go_relaxed.owl perinuclear ER pr 2011-04-12T10:51:05Z cellular_component owl:Class GO:1990578 biolink:NamedThing perinuclear endoplasmic reticulum membrane The membrane of the perinuclear endoplasmic reticulum, which is the portion of endoplasmic reticulum, the intracellular network of tubules and cisternae, that occurs near the nucleus. tmpzr1t_l9r_go_relaxed.owl perinuclear ER membrane mcc 2014-12-09T01:13:01Z cellular_component owl:Class GO:0001906 biolink:NamedThing cell killing Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions. tmpzr1t_l9r_go_relaxed.owl necrosis biological_process owl:Class GO:1990789 biolink:NamedThing thyroid gland epithelial cell proliferation The multiplication or reproduction of thyroid gland epithelial cells, resulting in the expansion of the thyroid gland epithelial cell population. tmpzr1t_l9r_go_relaxed.owl Hurthle cell proliferation|thyroid follicular cell proliferation sl 2015-07-02T18:50:01Z biological_process owl:Class GO:0001771 biolink:NamedThing immunological synapse formation The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction. tmpzr1t_l9r_go_relaxed.owl formation of immunological synapse biological_process owl:Class GO:0002753 biolink:NamedThing cytoplasmic pattern recognition receptor signaling pathway Any series of molecular signals generated as a consequence of a cytoplasmic pattern recognition receptor (PRR) binding to one of its physiological ligands. PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species. tmpzr1t_l9r_go_relaxed.owl cytoplasmic pathogen receptor signaling pathway|cytoplasmic pattern recognition receptor signalling pathway|cytoplasmic PRR signaling pathway|cytoplasmic PAMP receptor signaling pathway https://github.com/geneontology/go-ontology/issues/18588 biological_process owl:Class GO:1900699 biolink:NamedThing negative regulation of o-orsellinic acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of o-orsellinic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of o-orsellinic acid anabolism|down-regulation of o-orsellinic acid biosynthesis|inhibition of o-orsellinic acid biosynthesis|down-regulation of o-orsellinic acid anabolism|down regulation of o-orsellinic acid anabolism|negative regulation of o-orsellinic acid formation|negative regulation of o-orsellinic acid biosynthesis|downregulation of o-orsellinic acid biosynthetic process|downregulation of o-orsellinic acid synthesis|downregulation of o-orsellinic acid biosynthesis|inhibition of o-orsellinic acid biosynthetic process|down regulation of o-orsellinic acid formation|down-regulation of o-orsellinic acid formation|inhibition of o-orsellinic acid synthesis|negative regulation of o-orsellinic acid anabolism|down regulation of o-orsellinic acid biosynthesis|downregulation of o-orsellinic acid formation|down regulation of o-orsellinic acid biosynthetic process|down-regulation of o-orsellinic acid synthesis|downregulation of o-orsellinic acid anabolism|inhibition of o-orsellinic acid formation|down-regulation of o-orsellinic acid biosynthetic process|down regulation of o-orsellinic acid synthesis|negative regulation of o-orsellinic acid synthesis di 2012-05-22T04:57:08Z biological_process owl:Class GO:0009036 biolink:NamedThing type II site-specific deoxyribonuclease activity Catalysis of the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates and 3' hydroxyls. Cleavage is dependent on the presence in the DNA of a specific recognition site; cleavage occurs at or very near this recognition site. tmpzr1t_l9r_go_relaxed.owl type II restriction enzyme activity EC:3.1.21.4|MetaCyc:3.1.21.4-RXN molecular_function owl:Class GO:0018094 biolink:NamedThing protein polyglycylation The addition of glycyl units covalently bound to the gamma carboxyl group peptidyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0201 biological_process owl:Class GO:0071888 biolink:NamedThing macrophage apoptotic process Any apoptotic process in a macrophage, a mononuclear phagocyte present in a variety of tissues. tmpzr1t_l9r_go_relaxed.owl activation-induced cell death|AICD|macrophage apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). mah 2010-09-14T12:50:40Z biological_process owl:Class GO:0120220 biolink:NamedThing basal body patch The region in the apical portion of multiciliated epithelial cells where the ciliary basal bodies cluster. tmpzr1t_l9r_go_relaxed.owl centriolar patch krc 2019-11-15T17:19:24Z cellular_component owl:Class GO:0045177 biolink:NamedThing apical part of cell The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue. tmpzr1t_l9r_go_relaxed.owl apical region of cell cellular_component owl:Class GO:0014816 biolink:NamedThing skeletal muscle satellite cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a satellite cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099562 biolink:NamedThing maintenance of postsynaptic density structure A process which maintains the organization and the arrangement of proteins in the presynaptic density. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048611 biolink:NamedThing embryonic ectodermal digestive tract development The process, occurring during the embryonic phase, whose specific outcome is the progression of the ectodermal gut over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl embryonic ectodermal gut development biological_process owl:Class GO:0009541 biolink:NamedThing etioplast prolamellar body A three dimensional regular lattice found in etioplasts. It is composed of a continuous system of tubules but when exposed to light the symmetrical arrangement is rapidly lost as tubules become pinched off into two dimensional sections of lattice. These for perforated sheets of membrane that move apart, extend and increase, finally establishing the typical granal and intergranal lamellae of the mature chloroplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098559 biolink:NamedThing cytoplasmic side of early endosome membrane The side (leaflet) of the early endosome membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external side of early endosome membrane|external leaflet of early endosome membrane In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane. cellular_component owl:Class GO:0031901 biolink:NamedThing early endosome membrane The lipid bilayer surrounding an early endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006685 biolink:NamedThing sphingomyelin catabolic process The chemical reactions and pathways resulting in the breakdown of sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine. tmpzr1t_l9r_go_relaxed.owl sphingomyelin degradation|sphingomyelin breakdown|sphingomyelin catabolism biological_process owl:Class GO:0044333 biolink:NamedThing Wnt signaling pathway involved in digestive tract morphogenesis The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the generation and the organization of the digestive tract. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signaling pathway involved in digestive tract morphogenesis|Wnt receptor signalling pathway involved in digestive tract morphogenesis|Wnt-activated signaling pathway involved in digestive tract morphogenesis jl 2010-08-20T11:36:23Z biological_process owl:Class GO:1903730 biolink:NamedThing regulation of phosphatidate phosphatase activity Any process that modulates the frequency, rate or extent of phosphatidate phosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidic acid phosphatase activity|regulation of phosphatic acid phosphatase activity|regulation of acid phosphatidyl phosphatase activity|regulation of 3-sn-phosphatidate phosphohydrolase activity|regulation of phosphatic acid phosphohydrolase activity|regulation of phosphatidate phosphohydrolase activity Any process that modulates the frequency, rate or extent of phosphatidate phosphatase activity rn 2014-12-11T21:29:55Z biological_process owl:Class GO:0055103 biolink:NamedThing ligase regulator activity Binds to and modulates the activity of a ligase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007286 biolink:NamedThing spermatid development The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl spermiogenesis|spermatid cell development Wikipedia:Spermiogenesis biological_process owl:Class GO:0044604 biolink:NamedThing ABC-type phytochelatin transporter activity Enables the directed movement of a phytochelatin from one side of a membrane to the other. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. tmpzr1t_l9r_go_relaxed.owl ABC-type phytochelatin transmembrane transporter activity|cadystin transmembrane transporter activity|ATPase-coupled phytochelatin transmembrane transporter activity|phytochelatin transporter activity|cadystin transmembrane transporter ATPase activity|ATP-dependent phytochelatin transmembrane transporter activity|phytochelatin transmembrane transporter ATPase activity|phytochelatin transmembrane transporter activity|cadystin transporter activity https://github.com/geneontology/go-ontology/issues/14492 jl 2010-10-25T01:00:17Z GO:0071992|GO:0071991 molecular_function owl:Class GO:0032825 biolink:NamedThing positive regulation of natural killer cell differentiation Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of natural killer cell differentiation|up regulation of natural killer cell differentiation|positive regulation of natural killer cell development|up-regulation of natural killer cell differentiation|stimulation of natural killer cell differentiation|upregulation of natural killer cell differentiation|positive regulation of NK cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1905256 biolink:NamedThing negative regulation of RNA binding transcription factor activity Any process that stops, prevents or reduces the frequency, rate or extent of RNA binding transcription factor activity. tmpzr1t_l9r_go_relaxed.owl inhibition of RNA binding transcription factor activity|downregulation of RNA binding transcription factor activity|down-regulation of RNA binding transcription factor activity|down regulation of RNA binding transcription factor activity bf 2016-06-13T11:29:20Z biological_process owl:Class GO:0035271 biolink:NamedThing ring gland development Progression of the ring gland over time, from its formation to a mature structure. The ring gland is a neuroendocrine organ found in higher Dipterans, which is composed of the prothoracic gland, the corpus allatum, and the corpora cardiacum. The ring gland is the site of production and release of ecdysteroids and juvenile hormones. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology terms 'ring gland ; FBbt:00001722, 'prothoracic gland ; FBbt:00001724', 'corpus allatum ; FBbt:00005800' and 'corpus cardiacum ; FBbt:00005799. biological_process owl:Class GO:0016322 biolink:NamedThing neuron remodeling The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development. tmpzr1t_l9r_go_relaxed.owl neuronal remodeling|axon pruning biological_process owl:Class GO:0043588 biolink:NamedThing skin development The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue. tmpzr1t_l9r_go_relaxed.owl animal skin development biological_process owl:Class GO:0002433 biolink:NamedThing immune response-regulating cell surface receptor signaling pathway involved in phagocytosis An immune response-regulating cell surface receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes. tmpzr1t_l9r_go_relaxed.owl phagocytosis triggered by activation of immune response cell surface activating receptor|immune response-regulating cell surface receptor signalling pathway involved in phagocytosis biological_process owl:Class GO:0006909 biolink:NamedThing phagocytosis A vesicle-mediated transport process that results in the engulfment of external particulate material by phagocytes and their delivery to the lysosome. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Phagocytosis biological_process owl:Class GO:0019763 biolink:NamedThing immunoglobulin receptor activity Combining with the Fc region of an immunoglobulin protein and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl FC receptor activity GO:0016489 molecular_function owl:Class GO:0014725 biolink:NamedThing regulation of extraocular skeletal muscle development Any process that modulates the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019889 biolink:NamedThing pteridine metabolic process The chemical reactions and pathways involving pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group. tmpzr1t_l9r_go_relaxed.owl pteridine metabolism biological_process owl:Class GO:0010240 biolink:NamedThing plastid pyruvate dehydrogenase complex Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). This complex is found in plant plastids and is distinct from the one found in mitochondria. tmpzr1t_l9r_go_relaxed.owl dehydrogenase complex cellular_component owl:Class GO:0120321 biolink:NamedThing nuclear envelope adjacent to nuclear pore complex The region of the nuclear envelope situated in close proximity to a nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl nuclear envelope periphery of the nuclear pore complex|associated with the nuclear pore|nuclear envelope adjacent to NPC https://github.com/geneontology/go-ontology/issues/21774 krc 2021-07-07T20:30:21Z cellular_component owl:Class GO:0060854 biolink:NamedThing branching involved in lymph vessel morphogenesis The process of the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system. tmpzr1t_l9r_go_relaxed.owl patterning of lymph vessels dph 2009-08-12T12:00:48Z biological_process owl:Class GO:1902805 biolink:NamedThing positive regulation of synaptic vesicle transport Any process that activates or increases the frequency, rate or extent of synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl up regulation of synaptic vesicle transport|positive regulation of synaptic vesicle fusion|up-regulation of synaptic vesicle fission|up regulation of synaptic vesicle fusion|upregulation of synaptic vesicle fission|up regulation of synaptic vesicle fission|upregulation of synaptic vesicle transport|upregulation of synaptic vesicle fusion|up-regulation of synaptic vesicle transport|activation of synaptic vesicle fission|activation of synaptic vesicle transport|positive regulation of synaptic vesicle fission|up-regulation of synaptic vesicle fusion|activation of synaptic vesicle fusion kmv 2014-03-25T14:56:46Z biological_process owl:Class GO:0048489 biolink:NamedThing synaptic vesicle transport The directed movement of synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle trafficking|synaptic vesicle fission|synaptic vesicle fusion GO:0016181 biological_process owl:Class GO:0003391 biolink:NamedThing amphid sensory organ dendrite retrograde extension The progression of an amphid sensory organ's neuronal dendrite over time by the attachment of a part of the cell to an anchor and the subsequent migration of the cell body away from the anchor point. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:28:27Z biological_process owl:Class GO:0003388 biolink:NamedThing neuron development involved in amphid sensory organ development The process whose specific outcome is the progression of a neuron over time, that contributes to the development of the amphid sensory organ. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:18:06Z biological_process owl:Class GO:0007259 biolink:NamedThing receptor signaling pathway via JAK-STAT Any process in which STAT proteins (Signal Transducers and Activators of Transcription) and JAK (Janus Activated Kinase) proteins convey a signal to trigger a change in the activity or state of a cell. The receptor signaling pathway via JAK-STAT begins with activation of a receptor and proceeeds through STAT protein activation by members of the JAK family of tyrosine kinases. STAT proteins dimerize and subsequently translocate to the nucleus. The pathway ends with regulation of target gene expression by STAT proteins. tmpzr1t_l9r_go_relaxed.owl JAK-STAT cascade|JAK-STAT signal transduction Wikipedia:JAK-STAT_signaling_pathway biological_process owl:Class GO:0030902 biolink:NamedThing hindbrain development The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium). tmpzr1t_l9r_go_relaxed.owl rhombencephalon development biological_process owl:Class GO:0002077 biolink:NamedThing acrosome matrix dispersal The proteolytic digestion of components in the acrosomal matrix that occurs as part of the acrosome reaction. The process can occur either in the cumulus oophorous facilitating the penetration of it by the sperm, or at the zona pellucida allowing the sperm to reach the plasma membrane of the egg where the inner acrosomal membrane of the sperm can interact with the egg plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017109 biolink:NamedThing glutamate-cysteine ligase complex An enzyme complex that catalyzes the ligation of glutamate to cysteine, forming glutamylcysteine. tmpzr1t_l9r_go_relaxed.owl gamma-glutamylcysteine synthetase complex cellular_component owl:Class GO:0005778 biolink:NamedThing peroxisomal membrane The lipid bilayer surrounding a peroxisome. tmpzr1t_l9r_go_relaxed.owl peroxisome membrane cellular_component owl:Class GO:0021519 biolink:NamedThing spinal cord association neuron specification The process in which a cell becomes capable of differentiating autonomously into an association neuron in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032607 biolink:NamedThing interferon-alpha production The appearance of interferon-alpha due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-alpha production|interferon-alpha secretion|IFNA production|interferon-alpha biosynthetic process Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0045349|GO:0072642 biological_process owl:Class GO:1902159 biolink:NamedThing regulation of cyclic nucleotide-gated ion channel activity Any process that modulates the frequency, rate or extent of cyclic nucleotide-gated ion channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of cyclic nucleotide-activated ion channel activity|regulation of cyclic nucleotide gated ion channel activity|regulation of cyclic nucleotide activated ion channel activity sl 2013-05-21T19:24:30Z biological_process owl:Class GO:0043855 biolink:NamedThing cyclic nucleotide-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a cyclic nucleotide has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl cyclic nucleotide activated ion channel activity|cyclic nucleotide-activated ion channel activity|cyclic nucleotide gated ion channel activity molecular_function owl:Class GO:0021580 biolink:NamedThing medulla oblongata formation The process that gives rise to the medulla oblongata. This process pertains to the initial formation of a structure from unspecified parts. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate. tmpzr1t_l9r_go_relaxed.owl myelencephalon formation|medulla biosynthesis|medulla formation|myelencephalon biosynthesis biological_process owl:Class GO:0043709 biolink:NamedThing cell adhesion involved in single-species biofilm formation The attachment of a cell to a solid substrate, via cell adhesion molecules, during the formation of a biofilm composed of microorganisms of the same species. tmpzr1t_l9r_go_relaxed.owl cell adhesion during single-species biofilm formation biological_process owl:Class GO:0019284 biolink:NamedThing L-methionine salvage from S-adenosylmethionine The chemical reactions and pathways resulting in the formation of L-methionine from S-adenosylmethionine. tmpzr1t_l9r_go_relaxed.owl L-methionine synthesis from S-adenosylmethionine|L-methionine formation from S-adenosylmethionine biological_process owl:Class GO:0070985 biolink:NamedThing transcription factor TFIIK complex A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin28p/CDK7. tmpzr1t_l9r_go_relaxed.owl Mcs6/Mcs2/Pmh1 complex|cyclin H-CDK7 complex|TFIIK complex mah 2009-10-27T04:19:37Z cellular_component owl:Class GO:0005675 biolink:NamedThing transcription factor TFIIH holo complex A complex that is capable of kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. It is composed of the core TFIIH complex and the TFIIK complex. tmpzr1t_l9r_go_relaxed.owl holo TFIIH complex cellular_component owl:Class GO:0006286 biolink:NamedThing base-excision repair, base-free sugar-phosphate removal Excision of the sugar phosphate residue at an AP site, i.e. a deoxyribose sugar with a missing base, by a phosphodiesterase enzyme. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900566 biolink:NamedThing chanoclavine-I biosynthetic process The chemical reactions and pathways resulting in the formation of chanoclavine-I. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I anabolism|chanoclavine-I formation|chanoclavine-I biosynthesis|chanoclavine-I synthesis di 2012-05-15T06:30:55Z biological_process owl:Class GO:0070253 biolink:NamedThing somatostatin secretion The regulated release of somatostatin from secretory granules in the D cells of the pancreas. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009333 biolink:NamedThing cysteine synthase complex Cysteine synthase is a multienzyme complex made up, in E. coli, of the heteromeric hexamer serine acetyltransferase and the homodimer O-acetylserine (thiol)-lyase A. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990732 biolink:NamedThing pyrenoid A non-membrane-bounded organelle found within the chloroplasts of algae and hornworts; responsible for carbon dioxide fixation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pyrenoid pr 2015-04-24T12:44:52Z cellular_component owl:Class GO:0021893 biolink:NamedThing cerebral cortex GABAergic interneuron fate commitment The process in which the developmental fate of a neuroblast becomes restricted such that it will develop into a GABAergic interneuron residing in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070078 biolink:NamedThing histone H3-R2 demethylation The modification of histone H3 by the removal of a methyl group from arginine at position 2 of the histone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900060 biolink:NamedThing negative regulation of ceramide biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of ceramide anabolism|downregulation of ceramide formation|down-regulation of ceramide synthesis|negative regulation of ceramide biosynthesis|downregulation of ceramide biosynthetic process|down regulation of ceramide anabolism|negative regulation of ceramide synthesis|inhibition of ceramide biosynthesis|down regulation of ceramide biosynthetic process|negative regulation of ceramide formation|inhibition of ceramide formation|down-regulation of ceramide formation|down regulation of ceramide biosynthesis|downregulation of ceramide biosynthesis|down-regulation of ceramide biosynthetic process|downregulation of ceramide synthesis|downregulation of ceramide anabolism|inhibition of ceramide synthesis|down-regulation of ceramide anabolism|down-regulation of ceramide biosynthesis|inhibition of ceramide biosynthetic process|inhibition of ceramide anabolism|down regulation of ceramide synthesis|down regulation of ceramide formation dph 2012-01-25T03:18:07Z biological_process owl:Class GO:1900104 biolink:NamedThing regulation of hyaluranon cable assembly Any process that modulates the frequency, rate or extent of hyaluranon cable assembly. tmpzr1t_l9r_go_relaxed.owl regulation of HA cable assembly yaf 2012-02-16T01:00:41Z biological_process owl:Class GO:0036118 biolink:NamedThing hyaluranon cable assembly A process that results in the aggregation, arrangement and bonding together of a hyaluranon cable, a cable structure, surrounding some cell types (e.g. proximal or bronchial tubular epithelial cells), and composed of hyaluranon (HA), a ubiquitous connective tissue glycosaminoglycan. tmpzr1t_l9r_go_relaxed.owl HA cable assembly bf 2012-02-16T11:06:58Z biological_process owl:Class GO:0005758 biolink:NamedThing mitochondrial intermembrane space The region between the inner and outer lipid bilayers of the mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl mitochondrial membrane lumen|mitochondrial envelope lumen NIF_Subcellular:sao118944228 GO:0031971 cellular_component owl:Class GO:1903899 biolink:NamedThing positive regulation of PERK-mediated unfolded protein response Any process that activates or increases the frequency, rate or extent of the PERK-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl activation of PKR-like ER kinase signal transduction|upregulation of PERK signaling in response to endoplasmic reticulum stress|up regulation of PERK signaling in response to endoplasmic reticulum stress|positive regulation of endoplasmic reticulum unfolded protein response; PERK signaling|up regulation of PERK-mediated unfolded protein response|upregulation of endoplasmic reticulum unfolded protein response; PERK signaling|activation of PERK-mediated unfolded protein response|upregulation of PERK branch of UPR|upregulation of PERK-mediated unfolded protein response|positive regulation of EIF2AK3-mediated unfolded protein response|up-regulation of PERK signaling in response to endoplasmic reticulum stress|upregulation of UPR signaling by PERK stress sensor|up regulation of endoplasmic reticulum unfolded protein response; PERK signaling|up-regulation of PERK-mediated unfolded protein response|activation of endoplasmic reticulum unfolded protein response; PERK signaling|up-regulation of UPR signaling by PERK stress sensor|activation of PERK signaling in response to endoplasmic reticulum stress|up-regulation of endoplasmic reticulum unfolded protein response; PERK signaling|positive regulation of UPR signaling by PERK stress sensor|upregulation of PKR-like ER kinase signal transduction|up regulation of PERK branch of UPR|positive regulation of PERK branch of UPR|positive regulation of PKR-like ER kinase signal transduction|up regulation of UPR signaling by PERK stress sensor|positive regulation of PERK signaling in response to endoplasmic reticulum stress|up regulation of PKR-like ER kinase signal transduction|activation of PERK branch of UPR|activation of UPR signaling by PERK stress sensor|up-regulation of PERK branch of UPR|up-regulation of PKR-like ER kinase signal transduction bf 2015-02-09T10:18:32Z biological_process owl:Class GO:1905706 biolink:NamedThing regulation of mitochondrial ATP synthesis coupled proton transport Any process that modulates the frequency, rate or extent of mitochondrial ATP synthesis coupled proton transport. tmpzr1t_l9r_go_relaxed.owl vw 2016-11-17T14:07:33Z biological_process owl:Class GO:0042776 biolink:NamedThing mitochondrial ATP synthesis coupled proton transport The transport of protons across a mitochondrial membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. tmpzr1t_l9r_go_relaxed.owl mitochondrial proton transport biological_process owl:Class GO:0062244 biolink:NamedThing double membrane vesicle viral factory lumen The volume surrounded by the inner membrane of a double membrane vesicle viral factory. tmpzr1t_l9r_go_relaxed.owl lumen of double membrane vesicle viral factory dph 2020-04-20T20:53:30Z cellular_component owl:Class GO:0039718 biolink:NamedThing double membrane vesicle viral factory A cytoplasmic viral factory that consists of a double-membrane bound vesicle. Has a diameter of 200-300nm and is derived from the endoplasmic reticulum or Golgi apparatus. Produced by Picornaviridae, Nidovirales, Arteriviridae and Coronaviridae. tmpzr1t_l9r_go_relaxed.owl DMV viral factory bf 2013-12-19T15:31:22Z cellular_component owl:Class GO:0060631 biolink:NamedThing regulation of meiosis I Any process that modulates the rate, frequency, or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:55:19Z biological_process owl:Class GO:0007127 biolink:NamedThing meiosis I The first meiotic nuclear division in which homologous chromosomes are paired and segregated from each other, producing two haploid daughter nuclei. tmpzr1t_l9r_go_relaxed.owl meiosis I nuclear division Wikipedia:Meiosis#Meiosis_I biological_process owl:Class GO:0038198 biolink:NamedThing auxin receptor activity Combining with auxin and transmitting the signal in the cell to initiate a change in cell activity. Auxin is a plant hormone (phytohormone). tmpzr1t_l9r_go_relaxed.owl bf 2013-12-05T15:47:42Z molecular_function owl:Class GO:0010011 biolink:NamedThing auxin binding Binding to auxin, a plant hormone that regulates aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl auxin receptor molecular_function owl:Class GO:0005905 biolink:NamedThing clathrin-coated pit A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes. tmpzr1t_l9r_go_relaxed.owl coated pit NIF_Subcellular:sao1969557946 cellular_component owl:Class GO:0060953 biolink:NamedThing cardiac glial cell fate commitment The commitment of cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:11:23Z biological_process owl:Class GO:0060950 biolink:NamedThing cardiac glial cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a glial cell of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:06:37Z biological_process owl:Class GO:1903204 biolink:NamedThing negative regulation of oxidative stress-induced neuron death Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death. tmpzr1t_l9r_go_relaxed.owl downregulation of neuron death in response to oxidative stress|down-regulation of neuron death in response to oxidative stress|inhibition of oxidative stress-induced neuron death|inhibition of neuron death in response to oxidative stress|down regulation of oxidative stress-induced neuron death|down regulation of neuronal cell death in response to oxidative stress|inhibition of neuronal cell death in response to oxidative stress|down regulation of neuron death in response to oxidative stress|downregulation of neuronal cell death in response to oxidative stress|down-regulation of oxidative stress-induced neuron death|neuronal protection under oxidative stress|negative regulation of neuronal cell death in response to oxidative stress|down-regulation of neuronal cell death in response to oxidative stress|downregulation of oxidative stress-induced neuron death|neuroprotection against oxidative stress bf 2014-07-21T16:17:36Z biological_process owl:Class GO:0061709 biolink:NamedThing reticulophagy The selective autohagy process in which parts of the endoplasmic reticulum are loaded into autophagosomes, delivered to the vacuole, and degraded in response to changing cellular conditions. tmpzr1t_l9r_go_relaxed.owl ER-phagy|endoplasmic reticulum autophagy|autophagy of the endoplasmic reticulum|endoplasmic reticulum degradation|ER degradation|ER autophagy|autophagy of the ER dph 2015-06-18T15:15:48Z GO:1990766 biological_process owl:Class GO:1905692 biolink:NamedThing endoplasmic reticulum disassembly The disaggregation of an endoplasmic reticulum into its constituent components. tmpzr1t_l9r_go_relaxed.owl ER disassembly pr 2016-11-14T13:39:14Z biological_process owl:Class GO:1902870 biolink:NamedThing negative regulation of amacrine cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of amacrine cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of amacrine cell differentiation|downregulation of amacrine neuron differentiation|inhibition of amacrine neuron differentiation|down-regulation of amacrine neuron differentiation|negative regulation of amacrine neuron differentiation|downregulation of amacrine cell differentiation|inhibition of amacrine cell differentiation|down regulation of amacrine neuron differentiation|down-regulation of amacrine cell differentiation mr 2014-04-03T15:24:40Z biological_process owl:Class GO:0035881 biolink:NamedThing amacrine cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an amacrine cell, an interneuron generated in the inner nuclear layer (INL) of the vertebrate retina. Amacrine cells integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. Amacrine cells lack large axons. tmpzr1t_l9r_go_relaxed.owl amacrine neuron differentiation bf 2011-06-06T11:32:50Z biological_process owl:Class GO:0031308 biolink:NamedThing intrinsic component of nuclear outer membrane The component of the nuclear outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to nuclear outer membrane cellular_component owl:Class GO:0007396 biolink:NamedThing suture of dorsal opening Closure of the dorsal hole. Filopodia extending from each leading edge interdigitate at the dorsal midline and appear to prime the formation of adherens junctions between the two rows of leading edge cells. Newly formed septate junctions are also used to seal the dorsal hole. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031269 biolink:NamedThing pseudopodium assembly The assembly of a pseudopodium by rearrangement of the actin cytoskeleton and overlying membrane. tmpzr1t_l9r_go_relaxed.owl pseudopodium formation|pseudopodium extension biological_process owl:Class GO:0072276 biolink:NamedThing metanephric glomerulus vasculature morphogenesis The process in which the anatomical structures of the metanephric glomerulus vasculature are generated and organized. The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T02:47:32Z biological_process owl:Class GO:0043046 biolink:NamedThing DNA methylation involved in gamete generation The covalent transfer of a methyl group to C-5 of cytosine that contributes to the establishment of DNA methylation patterns in the gamete. tmpzr1t_l9r_go_relaxed.owl de novo DNA methylation biological_process owl:Class GO:1901717 biolink:NamedThing positive regulation of gamma-aminobutyric acid catabolic process Any process that activates or increases the frequency, rate or extent of gamma-aminobutyric acid catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of GABA catabolic process|upregulation of 4-aminobutanoate catabolism|up regulation of 4-aminobutanoate catabolism|up regulation of gamma-aminobutyric acid breakdown|up regulation of GABA catabolic process|activation of 4-aminobutanoate catabolism|activation of gamma-aminobutyric acid catabolism|up-regulation of gamma-aminobutyric acid catabolic process|upregulation of gamma-aminobutyric acid breakdown|up-regulation of gamma-aminobutyric acid breakdown|up regulation of GABA catabolism|positive regulation of GABA catabolism|activation of gamma-aminobutyric acid degradation|positive regulation of gamma-aminobutyric acid breakdown|positive regulation of gamma-aminobutyric acid degradation|up-regulation of 4-aminobutyrate catabolic process|up regulation of 4-aminobutyrate catabolic process|upregulation of 4-aminobutyrate catabolism|activation of GABA catabolic process|upregulation of gamma-aminobutyric acid catabolic process|up regulation of 4-aminobutanoate catabolic process|activation of 4-aminobutyrate catabolic process|positive regulation of 4-aminobutanoate catabolic process|up-regulation of GABA catabolism|activation of 4-aminobutanoate catabolic process|activation of GABA catabolism|positive regulation of 4-aminobutanoate catabolism|upregulation of GABA catabolism|up-regulation of gamma-aminobutyric acid degradation|activation of 4-aminobutyrate catabolism|up-regulation of 4-aminobutyrate catabolism|activation of gamma-aminobutyric acid breakdown|positive regulation of 4-aminobutyrate catabolic process|up regulation of 4-aminobutyrate catabolism|up-regulation of 4-aminobutanoate catabolic process|up regulation of gamma-aminobutyric acid catabolism|positive regulation of gamma-aminobutyric acid catabolism|upregulation of gamma-aminobutyric acid catabolism|upregulation of 4-aminobutyrate catabolic process|up-regulation of GABA catabolic process|up regulation of gamma-aminobutyric acid degradation|up-regulation of gamma-aminobutyric acid catabolism|positive regulation of 4-aminobutyrate catabolism|upregulation of gamma-aminobutyric acid degradation|upregulation of GABA catabolic process|activation of gamma-aminobutyric acid catabolic process|up-regulation of 4-aminobutanoate catabolism|up regulation of gamma-aminobutyric acid catabolic process|upregulation of 4-aminobutanoate catabolic process mcc 2012-12-19T16:13:36Z biological_process owl:Class GO:0009450 biolink:NamedThing gamma-aminobutyric acid catabolic process The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid catabolism|GABA catabolism|4-aminobutyrate catabolism|4-aminobutanoate catabolism|gamma-aminobutyric acid breakdown|4-aminobutyrate catabolic process|gamma-aminobutyric acid degradation|4-aminobutanoate catabolic process|GABA catabolic process MetaCyc:4AMINOBUTMETAB-PWY See also the biological process term 'neurotransmitter catabolic process ; GO:0042135'. biological_process owl:Class GO:0044175 biolink:NamedThing host cell endosome membrane The lipid bilayer surrounding a host cell endosome. tmpzr1t_l9r_go_relaxed.owl host endosome membrane jl 2009-09-04T03:04:04Z cellular_component owl:Class GO:0140010 biolink:NamedThing D-aspartate transmembrane transporter activity Enables the transfer of D-aspartate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl pg 2017-03-13T11:15:15Z molecular_function owl:Class GO:0033017 biolink:NamedThing sarcoplasmic reticulum membrane The lipid bilayer surrounding the sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070459 biolink:NamedThing prolactin secretion The regulated release of prolactin, a peptide hormone that stimulates lactation, from secretory granules in the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061244 biolink:NamedThing mesonephric S-shaped body morphogenesis The process in which the mesonephric S-shaped body is generated and organized. The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:23:55Z biological_process owl:Class GO:0038177 biolink:NamedThing death receptor agonist activity Interacting with a death receptor such that the proportion of death receptors in an active form is increased. Ligand binding to a death receptor often induces a conformational change to activate the receptor. tmpzr1t_l9r_go_relaxed.owl death receptor activator activity bf 2012-09-20T12:52:00Z molecular_function owl:Class GO:0005123 biolink:NamedThing death receptor binding Binding to a member of the death receptor (DR) family. The DR family falls within the tumor necrosis factor receptor superfamily and is characterized by a cytoplasmic region of ~80 residues termed the death domain (DD). tmpzr1t_l9r_go_relaxed.owl DR binding|TRAIL binding|death receptor adaptor protein activity|KILLER binding|APO binding|FAS binding|EDAR binding|TNFR1 binding|NGFR binding|death receptor-associated factor activity|death receptor interacting protein activity|death receptor ligand molecular_function owl:Class GO:0080060 biolink:NamedThing integument development The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T02:58:07Z biological_process owl:Class GO:0048574 biolink:NamedThing long-day photoperiodism, flowering A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length. The critical day length varies between species. Although the term is long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 minus the critical day length. tmpzr1t_l9r_go_relaxed.owl response to short-night, flowering|response to long-day, flowering|long-day photoperiodic control of inflorescence development|long-day photoperiodic control of flowering|long-day photoperiodic control of flowering time|short-night photoperiodism, flowering biological_process owl:Class GO:2000035 biolink:NamedThing regulation of stem cell division Any process that modulates the frequency, rate or extent of stem cell division. tmpzr1t_l9r_go_relaxed.owl regulation of stem cell renewal tb 2010-08-05T11:34:53Z biological_process owl:Class GO:0061798 biolink:NamedThing GTP 3',8'-cyclase activity Catalysis of the reaction: GTP=(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:49576|MetaCyc:RXN-8340|EC:4.1.99.22 dph 2016-10-06T14:26:11Z molecular_function owl:Class GO:0002510 biolink:NamedThing central B cell tolerance induction Tolerance induction of B cells in the bone marrow. tmpzr1t_l9r_go_relaxed.owl central B-cell tolerance induction|central B lymphocyte tolerance induction|central B-lymphocyte tolerance induction biological_process owl:Class GO:0072593 biolink:NamedThing reactive oxygen species metabolic process The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. tmpzr1t_l9r_go_relaxed.owl ROS metabolic process|reactive oxygen species metabolism mah 2011-02-11T10:50:06Z biological_process owl:Class GO:0002540 biolink:NamedThing leukotriene production involved in inflammatory response The synthesis or release of any leukotriene following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl leukotriene production involved in acute inflammatory response biological_process owl:Class GO:1900681 biolink:NamedThing octadecene metabolic process The chemical reactions and pathways involving octadecene. tmpzr1t_l9r_go_relaxed.owl octadecene metabolism tt 2012-05-22T04:28:28Z biological_process owl:Class GO:0061298 biolink:NamedThing retina vasculature development in camera-type eye The process whose specific outcome is the progression of the vasculature of the retina over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl retinal vasculature development dph 2010-09-06T03:27:06Z biological_process owl:Class GO:1902010 biolink:NamedThing negative regulation of translation in response to endoplasmic reticulum stress Any process that stops, prevents, or reduces the frequency, rate or extent of translation as a result of endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein synthesis involved in ER stress response|protein biosynthetic process inhibitor activity involved in response to ER stress|negative regulation of protein biosynthesis involved in response to ER stress|downregulation of protein biosynthetic process involved in ER stress response|protein biosynthesis inhibitor activity involved in ER stress response|down-regulation of protein biosynthetic process involved in ER stress response|negative regulation of protein biosynthesis involved in ER stress response|down-regulation of protein biosynthetic process involved in response to ER stress|inhibition of protein biosynthetic process involved in response to endoplasmic reticulum stress|negative regulation of protein biosynthetic process involved in response to endoplasmic reticulum stress|negative regulation of translation involved in ER stress response|negative regulation of protein anabolism involved in response to endoplasmic reticulum stress|negative regulation of translation involved in response to ER stress|down regulation of protein biosynthetic process involved in response to ER stress|negative regulation of protein synthesis involved in response to endoplasmic reticulum stress|negative regulation of protein formation involved in response to endoplasmic reticulum stress|down regulation of protein biosynthetic process involved in response to endoplasmic reticulum stress|downregulation of protein biosynthetic process involved in response to endoplasmic reticulum stress|protein biosynthesis inhibitor activity involved in response to ER stress|negative regulation of protein biosynthetic process involved in ER stress response|protein biosynthetic process inhibitor activity involved in ER stress response|down-regulation of protein biosynthetic process involved in response to endoplasmic reticulum stress|negative regulation of protein formation involved in response to ER stress|protein biosynthesis inhibitor activity involved in response to endoplasmic reticulum stress|inhibition of protein biosynthetic process involved in response to ER stress|negative regulation of protein synthesis involved in response to ER stress|downregulation of protein biosynthetic process involved in response to ER stress|negative regulation of protein formation involved in ER stress response|inhibition of protein biosynthetic process involved in ER stress response|negative regulation of protein biosynthesis involved in response to endoplasmic reticulum stress|negative regulation of protein anabolism involved in ER stress response|protein biosynthetic process inhibitor activity involved in response to endoplasmic reticulum stress|negative regulation of protein biosynthetic process involved in response to ER stress|negative regulation of protein anabolism involved in response to ER stress|down regulation of protein biosynthetic process involved in ER stress response dph 2013-03-22T13:43:26Z biological_process owl:Class GO:0007420 biolink:NamedThing brain development The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033005 biolink:NamedThing positive regulation of mast cell activation Any process that activates or increases the frequency, rate, or extent of mast cell activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905478 biolink:NamedThing regulation of glutamate-ammonia ligase activity Any process that modulates the frequency, rate or extent of glutamate-ammonia ligase activity. tmpzr1t_l9r_go_relaxed.owl regulation of glutamine synthetase activity|regulation of L-glutamine synthetase activity|regulation of L-glutamate:ammonia ligase (ADP-forming)|regulation of glutamylhydroxamic synthetase activity pga 2016-09-22T09:58:34Z biological_process owl:Class GO:0004356 biolink:NamedThing glutamate-ammonia ligase activity Catalysis of the reaction: L-glutamate + ATP + NH(3) = L-glutamine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl glutamylhydroxamic synthetase activity|L-glutamate:ammonia ligase (ADP-forming)|L-glutamine synthetase activity|glutamine synthetase activity EC:6.3.1.2|Reactome:R-HSA-70606|MetaCyc:GLUTAMINESYN-RXN|RHEA:16169|KEGG_REACTION:R00253 molecular_function owl:Class GO:1900851 biolink:NamedThing positive regulation of pseurotin A biosynthetic process Any process that activates or increases the frequency, rate or extent of pseurotin A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of pseurotin A biosynthetic process|up regulation of pseurotin A biosynthetic process|up-regulation of pseurotin A biosynthetic process di 2012-06-07T09:45:56Z biological_process owl:Class GO:0055123 biolink:NamedThing digestive system development The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038002 biolink:NamedThing endocrine signaling The transfer of information from one cell to another, where an endocrine hormone is transported from the signal-producing cell to the receiving cell via the circulatory system (via blood, lymph or cerebrospinal fluid). The signaling cell and the receiving cell are often distant to each other. tmpzr1t_l9r_go_relaxed.owl endocrine signalling This term should be used with caution, and only used when the signaling between cells has been clearly distinguished from paracrine signaling. bf 2011-02-25T02:12:19Z biological_process owl:Class GO:0000112 biolink:NamedThing nucleotide-excision repair factor 3 complex One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p). tmpzr1t_l9r_go_relaxed.owl NEF3 complex Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0010849 biolink:NamedThing regulation of proton-transporting ATPase activity, rotational mechanism Any process that modulates the rate of ATP hydrolysis by an ATPase. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl regulation of V-type ATPase activity|regulation of hydrogen ion transporting ATPase activity, rotational mechanism biological_process owl:Class GO:0002543 biolink:NamedThing activation of blood coagulation via clotting cascade Any process that initiates the clotting cascade of blood coagulation, a cascade of plasma enzymes that is triggered following damage to blood vessels, leading to formation of a clot. tmpzr1t_l9r_go_relaxed.owl activation of clotting cascade biological_process owl:Class GO:0002526 biolink:NamedThing acute inflammatory response Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003882 biolink:NamedThing CDP-diacylglycerol-serine O-phosphatidyltransferase activity Catalysis of the reaction: CDP-diacylglycerol + L-serine = CMP + O-sn-phosphatidyl-L-serine. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine synthetase activity|PS synthase activity|CDPdiglyceride-serine O-phosphatidyltransferase activity|CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity|serine exchange enzyme|phosphatidylserine synthase activity|CDP-diglycerine-serine O-phosphatidyltransferase activity|CDPdiacylglycerol-serine O-phosphatidyltransferase activity|CDP-diglyceride:serine phosphatidyltransferase activity|cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|CDP-diglyceride-L-serine phosphatidyltransferase activity|cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity RHEA:16913|EC:2.7.8.8|MetaCyc:PHOSPHASERSYN-RXN molecular_function owl:Class GO:0030137 biolink:NamedThing COPI-coated vesicle A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport. tmpzr1t_l9r_go_relaxed.owl coatomer cellular_component owl:Class GO:0017154 biolink:NamedThing semaphorin receptor activity Combining with a semaphorin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990810 biolink:NamedThing microtubule anchoring at mitotic spindle pole body Any process in which a microtubule is maintained in a specific location in a cell by attachment to a mitotic spindle pole body. Microtubules attach to spindle pole bodies at the minus end. tmpzr1t_l9r_go_relaxed.owl vw 2015-07-24T12:52:25Z biological_process owl:Class GO:0051097 biolink:NamedThing negative regulation of helicase activity Any process that stops or reduces the activity of a helicase. tmpzr1t_l9r_go_relaxed.owl downregulation of helicase activity|down regulation of helicase activity|inhibition of helicase activity|down-regulation of helicase activity biological_process owl:Class GO:1904231 biolink:NamedThing positive regulation of succinate dehydrogenase activity Any process that activates or increases the frequency, rate or extent of succinate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of succinate:acceptor oxidoreductase activity|up-regulation of succinic acid dehydrogenase activity|upregulation of succinyl dehydrogenase activity|up regulation of succinodehydrogenase activity|activation of succinate:(acceptor) oxidoreductase activity|up-regulation of succinyl dehydrogenase activity|activation of fumarate reductase activity|up regulation of fumaric hydrogenase activity|upregulation of succinate:acceptor oxidoreductase activity|positive regulation of succinate:(acceptor) oxidoreductase activity|positive regulation of succinate oxidoreductase activity|up regulation of succinyl dehydrogenase activity|positive regulation of succinyl dehydrogenase activity|positive regulation of succinate:acceptor oxidoreductase activity|upregulation of succinic acid dehydrogenase activity|positive regulation of succinic acid dehydrogenase activity|upregulation of fumarate dehydrogenase activity|activation of fumarate dehydrogenase activity|activation of succinate dehydrogenase activity|up regulation of fumarate dehydrogenase activity|positive regulation of succinodehydrogenase activity|positive regulation of fumarate reductase activity|up-regulation of succinodehydrogenase activity|up regulation of succinate dehydrogenase activity|positive regulation of fumaric hydrogenase activity|upregulation of succinate oxidoreductase activity|up regulation of fumarate reductase activity|upregulation of succinate dehydrogenase activity|up-regulation of fumarate dehydrogenase activity|up-regulation of succinate dehydrogenase activity|positive regulation of fumarate dehydrogenase activity|upregulation of fumarate reductase activity|activation of succinic acid dehydrogenase activity|up regulation of succinate:acceptor oxidoreductase activity|activation of fumaric hydrogenase activity|upregulation of succinate:(acceptor) oxidoreductase activity|upregulation of fumaric hydrogenase activity|up-regulation of succinate oxidoreductase activity|activation of succinate:acceptor oxidoreductase activity|activation of succinyl dehydrogenase activity|up-regulation of succinate:(acceptor) oxidoreductase activity|up regulation of succinic acid dehydrogenase activity|activation of succinodehydrogenase activity|up regulation of succinate:(acceptor) oxidoreductase activity|activation of succinate oxidoreductase activity|upregulation of succinodehydrogenase activity|up-regulation of fumarate reductase activity|up-regulation of fumaric hydrogenase activity|up regulation of succinate oxidoreductase activity rl 2015-05-15T09:51:20Z biological_process owl:Class GO:0007421 biolink:NamedThing stomatogastric nervous system development The process whose specific outcome is the progression of the stomatogastric nervous system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901894 biolink:NamedThing regulation of ATPase-coupled calcium transmembrane transporter activity Any process that modulates the frequency, rate or extent of an ATPase-coupled calcium transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of plasma membrane Ca-ATPase|regulation of calcium transporting ATPase activity|regulation of sarco(endo)plasmic reticulum Ca2+-ATPase|regulation of calcium-transporting ATPase activity|regulation of calcium efflux ATPase|regulation of Ca2+-transporting ATPase activity|regulation of calcium-translocating P-type ATPase activity|regulation of calcium pump|regulation of sarcoplasmic reticulum ATPase|regulation of Ca(2+)-transporting ATPase activity|regulation of calcium ABC transporter|regulation of ATP phosphohydrolase (Ca2+-transporting)|regulation of Ca2+-pumping ATPase activity rl 2013-02-06T21:18:16Z biological_process owl:Class GO:0035073 biolink:NamedThing pupariation The onset of prepupal development when the larval stops crawling, everts its spiracles and the larval cuticle becomes the puparium or pupal case that surrounds the organism for the duration of metamorphosis. tmpzr1t_l9r_go_relaxed.owl puparium biosynthesis|puparium formation biological_process owl:Class GO:0048292 biolink:NamedThing isotype switching to IgD isotypes The switching of activated B cells from IgM biosynthesis to IgD biosynthesis, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and IgD constant region gene segments in the immunoglobulin heavy chain locus. tmpzr1t_l9r_go_relaxed.owl class switching to IgD isotypes|isotype switch recombination to IgD isotypes Note that this term is to be used only for gene products involved in the expression of IgD through recombinational switching into the vestigial switch region at the 5' end of the IgD gene segment, rather than gene products involved in the expression of IgD through alternative splicing mechanisms. biological_process owl:Class GO:0099404 biolink:NamedThing mitotic sister chromatid cohesion, telomeric The cell cycle process in which telomeres of sister chromatids are joined during mitosis. tmpzr1t_l9r_go_relaxed.owl sister chromatid cohesion at telomere at mitosis|mitotic sister chromatid cohesion at telomere|telomeric mitotic sister chromatin cohesion biological_process owl:Class GO:0038064 biolink:NamedThing collagen receptor activity Combining with a collagen and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl transmembrane collagen receptor activity bf 2012-01-18T01:52:42Z molecular_function owl:Class GO:0038065 biolink:NamedThing collagen-activated signaling pathway A series of molecular signals initiated by collagen binding to a cell surface receptor, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl collagen-activated signalling pathway bf 2012-01-18T01:57:37Z biological_process owl:Class GO:0032839 biolink:NamedThing dendrite cytoplasm All of the contents of a dendrite, excluding the surrounding plasma membrane. tmpzr1t_l9r_go_relaxed.owl dendritic cytoplasm cellular_component owl:Class GO:0019958 biolink:NamedThing C-X-C chemokine binding Binding to a C-X-C chemokine; C-X-C chemokines have a single amino acid between the first two cysteines of the characteristic four cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120078 biolink:NamedThing cell adhesion involved in sprouting angiogenesis The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the formation of a blood vessel network. tmpzr1t_l9r_go_relaxed.owl cell adhesion involved in blood vessel anastomosis|cell adhesion involved in vascular anastomosis https://github.com/geneontology/go-ontology/issues/13690 krc 2017-06-27T21:29:47Z biological_process owl:Class GO:0070562 biolink:NamedThing regulation of vitamin D receptor signaling pathway Any process that modulates the frequency, rate or extent of vitamin D receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl regulation of vitamin D receptor signalling pathway|regulation of VDR signaling pathway mah 2009-04-14T01:46:03Z biological_process owl:Class GO:0070561 biolink:NamedThing vitamin D receptor signaling pathway The series of molecular signals generated as a consequence of a vitamin D receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl vitamin D receptor signalling pathway|VDR signaling pathway|calcitriol signaling pathway mah 2009-04-14T01:43:59Z biological_process owl:Class GO:0010658 biolink:NamedThing striated muscle cell apoptotic process A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death. Striated muscle cells make up striated muscle fibers which are divided by transverse bands into striations. tmpzr1t_l9r_go_relaxed.owl striated muscle cell apoptosis biological_process owl:Class GO:0015737 biolink:NamedThing galacturonate transmembrane transport The process in which galacturonate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl galacturonate transport biological_process owl:Class GO:0034485 biolink:NamedThing phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Catalysis of the reaction: phosphatidylinositol-3,4,5-trisphosphate + H2O = phosphatidylinositol-3,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1675949|RHEA:25528|MetaCyc:RXN-10036 molecular_function owl:Class GO:1903039 biolink:NamedThing positive regulation of leukocyte cell-cell adhesion Any process that activates or increases the frequency, rate or extent of leukocyte cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl upregulation of leukocyte cell adhesion|up-regulation of leukocyte adhesion|upregulation of leukocyte adhesion|activation of leukocyte adhesion|up regulation of leukocyte adhesion|positive regulation of leukocyte cell adhesion|up-regulation of leukocyte cell-cell adhesion|up regulation of leukocyte cell-cell adhesion|up regulation of leukocyte cell adhesion|positive regulation of leukocyte adhesion|activation of leukocyte cell-cell adhesion|upregulation of leukocyte cell-cell adhesion|up-regulation of leukocyte cell adhesion|activation of leukocyte cell adhesion Exogenous expression of ASS1 or NOS3 in HUVECs enhances NO production and inhibits monocyte adhesion rl 2014-05-19T15:30:15Z biological_process owl:Class GO:0002098 biolink:NamedThing tRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904437 biolink:NamedThing positive regulation of transferrin receptor binding Any process that activates or increases the frequency, rate or extent of transferrin receptor binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of transferrin receptor binding|upregulation of transferrin receptor binding|activation of transferrin receptor binding|up regulation of transferrin receptor binding kom 2015-07-06T13:49:13Z biological_process owl:Class GO:1990459 biolink:NamedThing transferrin receptor binding Binding to a transferrin receptor. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-18T20:14:24Z molecular_function owl:Class GO:0002322 biolink:NamedThing B cell proliferation involved in immune response The expansion of a B cell population by cell division following B cell activation during an immune response. tmpzr1t_l9r_go_relaxed.owl B cell proliferation during immune response|B-lymphocyte proliferation during immune response|B-cell proliferation during immune response|B lymphocyte proliferation during immune response biological_process owl:Class GO:0005947 biolink:NamedThing mitochondrial alpha-ketoglutarate dehydrogenase complex Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate dehydrogenase complex cellular_component owl:Class GO:0004102 biolink:NamedThing choline O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + choline = acetylcholine + CoA. tmpzr1t_l9r_go_relaxed.owl CHOACTase activity|acetyl-CoA:choline O-acetyltransferase activity|choline acetylase activity|choline acetyltransferase activity EC:2.3.1.6|KEGG_REACTION:R01023|RHEA:18821|MetaCyc:CHOLINE-O-ACETYLTRANSFERASE-RXN|Reactome:R-HSA-264622 molecular_function owl:Class GO:0006351 biolink:NamedThing transcription, DNA-templated The cellular synthesis of RNA on a template of DNA. tmpzr1t_l9r_go_relaxed.owl transcription|DNA-dependent transcription|transcription from bacterial-type RNA polymerase promoter|bacterial transcription|cellular transcription|transcription, DNA-dependent https://github.com/geneontology/go-ontology/issues/16737|https://github.com/geneontology/go-ontology/issues/22258|https://github.com/geneontology/go-ontology/issues/14854 Wikipedia:Transcription_(genetics) GO:0001121|GO:0061018|GO:0061022|GO:0006350 biological_process owl:Class GO:0035026 biolink:NamedThing leading edge cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090237 biolink:NamedThing regulation of arachidonic acid secretion Any process that modulates the rate, frequency, or extent of arachidonic acid secretion, the controlled release of arachidonic acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-20T03:32:22Z biological_process owl:Class GO:0060291 biolink:NamedThing long-term synaptic potentiation A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse. tmpzr1t_l9r_go_relaxed.owl LTP|long-term potentiation biological_process owl:Class GO:0045618 biolink:NamedThing positive regulation of keratinocyte differentiation Any process that activates or increases the frequency, rate or extent of keratinocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of keratinocyte differentiation|up regulation of keratinocyte differentiation|stimulation of keratinocyte differentiation|upregulation of keratinocyte differentiation|activation of keratinocyte differentiation biological_process owl:Class GO:0001569 biolink:NamedThing branching involved in blood vessel morphogenesis The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system. tmpzr1t_l9r_go_relaxed.owl patterning of blood vessels biological_process owl:Class GO:0071631 biolink:NamedThing mating pheromone secretion involved in positive regulation of conjugation with cellular fusion The regulated release of a mating pheromone, a peptide hormone that induces a behavioral or physiological response(s) from a responding organism or cell, that positively regulates a conjugation process that results in the union of cellular and genetic information from compatible mating types. tmpzr1t_l9r_go_relaxed.owl mating-type pheromone secretion involved in conjugation with cellular fusion mah 2010-02-11T03:36:57Z biological_process owl:Class GO:0015826 biolink:NamedThing threonine transport The directed movement of threonine, (2R*,3S*)-2-amino-3-hydroxybutanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-threonine transport biological_process owl:Class GO:0010319 biolink:NamedThing stromule Thin filamentous structure extending from the surface of all plastid types examined so far, including chloroplast, proplastid, etioplast, leucoplast, amyloplast, and chromoplast. In general, stromules are more abundant in tissues containing non-green plastids, and in cells containing smaller plastids. The primary function of stromules is still unresolved, although the presence of stromules markedly increases the plastid surface area, potentially increasing transport to and from the cytosol. Other functions of stromules, such as transfer of macromolecules between plastids and starch granule formation in cereal endosperm, may be restricted to particular tissues and cell types. tmpzr1t_l9r_go_relaxed.owl Stroma-filled tubule Wikipedia:Stromule cellular_component owl:Class GO:0035283 biolink:NamedThing central nervous system segmentation Division of the central nervous system into a series of semi-repetitive parts or segments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042093 biolink:NamedThing T-helper cell differentiation The process in which a relatively unspecialized thymocyte acquires specialized features of a T-helper cell. tmpzr1t_l9r_go_relaxed.owl T-helper cell development|helper T cell differentiation biological_process owl:Class GO:0051598 biolink:NamedThing meiotic recombination checkpoint signaling A signaling process that contributes to a meiotic recombination checkpoint, that acts during late prophase I (pachytene) and prevents segregation of homologous chromosomes until recombination is completed, ensuring proper distribution of the genetic material to the gametes. tmpzr1t_l9r_go_relaxed.owl pachytene checkpoint|signal transduction involved in meiotic recombination checkpoint|meiotic recombination checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072462 biological_process owl:Class GO:2000902 biolink:NamedThing cellooligosaccharide metabolic process The chemical reactions and pathways involving a cellooligosaccharide. tmpzr1t_l9r_go_relaxed.owl cellooligosaccharide metabolism jl 2011-07-28T03:21:46Z biological_process owl:Class GO:0010977 biolink:NamedThing negative regulation of neuron projection development Any process that decreases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites). tmpzr1t_l9r_go_relaxed.owl growth cone collapse|negative regulation of neurite development|negative regulation of neurite biosynthesis|negative regulation of neurite formation|negative regulation of neurite growth tb 2009-06-01T10:47:42Z biological_process owl:Class GO:0097003 biolink:NamedThing adipokinetic hormone receptor activity Combining with an adipokinetic hormone to initiate a change in cell activity. Adipokinetic hormones (AKHs) are protein or peptide hormones that are important for sugar and fat homeostasis in metazoa. In insects, they mobilize sugar and lipids from the insect fat body during energy-requiring activities such as flight and locomotion. They also contribute to hemolymph sugar homeostasis. tmpzr1t_l9r_go_relaxed.owl AKH receptor activity pr 2011-03-14T10:24:08Z molecular_function owl:Class GO:0055100 biolink:NamedThing adiponectin binding Binding to adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045333 biolink:NamedThing cellular respiration The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration). tmpzr1t_l9r_go_relaxed.owl oxidative metabolic process|respiration|oxidative metabolism Wikipedia:Cellular_respiration biological_process owl:Class GO:0090238 biolink:NamedThing positive regulation of arachidonic acid secretion Any process that increases the rate, frequency, or extent of arachidonic acid secretion, the controlled release of arachidonic acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-20T03:32:22Z biological_process owl:Class GO:0097149 biolink:NamedThing centralspindlin complex A heterotetrameric protein complex playing a key role in the formation of the central spindle in mitosis. Made up of two molecules each of a mitotic kinesin (ZEN-4 in Caenorhabditis elegans or MKLP1 in mammals) and of two molecules each of a GTPase activating protein (GAP) factor (CYK-4 in Caenorhabditis elegans or MgcRacGAP in mammals). tmpzr1t_l9r_go_relaxed.owl pr 2011-08-04T11:15:37Z cellular_component owl:Class GO:0060729 biolink:NamedThing intestinal epithelial structure maintenance A tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium. tmpzr1t_l9r_go_relaxed.owl epithelial structure maintenance of intestine|maintenance of intestinal epithelium dph 2009-06-12T01:44:52Z biological_process owl:Class GO:0072241 biolink:NamedThing metanephric DCT cell development The process whose specific outcome is the progression of a metanephric distal convoluted tubule cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl metanephric distal convoluted tubule cell development mah 2010-03-19T03:26:44Z biological_process owl:Class GO:0002344 biolink:NamedThing B cell affinity maturation The process in which B cells produce antibodies with increased antigen affinity. This is accomplished by somatic hypermutation and selection for B cells which produce higher affinity antibodies to antigen. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte affinity maturation|B lymphocyte affinity maturation|B-cell affinity maturation biological_process owl:Class GO:0061171 biolink:NamedThing establishment of bipolar cell polarity The specification and formation of bipolar intracellular organization or cell growth patterns. Bipolar organization is the organization that is a mirror image along an axis from a plane. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-30T08:49:38Z biological_process owl:Class GO:0032633 biolink:NamedThing interleukin-4 production The appearance of interleukin-4 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-4 biosynthetic process|interleukin-4 secretion|IL-4 production GO:0042224|GO:0072602|GO:0042097 biological_process owl:Class GO:0003052 biolink:NamedThing circadian regulation of systemic arterial blood pressure Any process in which an organism modulates its blood pressure at different values with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048350 biolink:NamedThing positive regulation of paraxial mesodermal cell fate specification Any process that activates or increases the frequency, rate or extent of paraxial mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl upregulation of paraxial mesodermal cell fate specification|stimulation of paraxial mesodermal cell fate specification|up regulation of paraxial mesodermal cell fate specification|up-regulation of paraxial mesodermal cell fate specification|activation of paraxial mesodermal cell fate specification biological_process owl:Class GO:0048348 biolink:NamedThing paraxial mesodermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into a paraxial mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030297 biolink:NamedThing transmembrane receptor protein tyrosine kinase activator activity Binds to and increases the activity of a transmembrane receptor protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007171 biolink:NamedThing activation of transmembrane receptor protein tyrosine kinase activity Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase activation|transmembrane receptor protein tyrosine kinase dimerization biological_process owl:Class GO:1904662 biolink:NamedThing positive regulation of sensory perception of bitter taste Any process that activates or increases the frequency, rate or extent of sensory perception of bitter taste. tmpzr1t_l9r_go_relaxed.owl activation of bitter taste perception|up-regulation of bitter taste perception|positive regulation of bitter taste perception|activation of sensory perception of bitter taste|up regulation of sensory perception of bitter taste|up regulation of bitter taste perception|upregulation of bitter taste perception|upregulation of sensory perception of bitter taste|up-regulation of sensory perception of bitter taste mr 2015-09-04T17:54:22Z biological_process owl:Class GO:0050913 biolink:NamedThing sensory perception of bitter taste The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl bitter taste perception biological_process owl:Class GO:0042799 biolink:NamedThing histone methyltransferase activity (H4-K20 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H4 L-lysine (position 20) = S-adenosyl-L-homocysteine + histone H4 N6-methyl-L-lysine (position 20). This reaction is the addition of a methyl group onto lysine at position 20 of the histone H4 protein. tmpzr1t_l9r_go_relaxed.owl histone H4 lysine 20-specific methyltransferase activity|histone methylase activity (H4-K20 specific)|histone lysine N-methyltransferase activity (H4-K20 specific) Reactome:R-HSA-5682965|Reactome:R-HSA-2301205 Note that in some species, the methyl group may be added to a lysine in a slightly different position of the histone H4 protein, but that this term still applies. molecular_function owl:Class GO:0007418 biolink:NamedThing ventral midline development The process whose specific outcome is the progression of the ventral midline over time, from its formation to the mature structure. In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099051 biolink:NamedThing vesicle scission involved in endocytosis The membrane scission process that is the final step in the formation of an endocytic vesicle: separation from the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060838 biolink:NamedThing lymphatic endothelial cell fate commitment The commitment of a venous blood vessel endothelial cell to a lymphatic endothelial cell fate and its capacity to differentiate into a lymphatic endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T03:51:45Z biological_process owl:Class GO:0060836 biolink:NamedThing lymphatic endothelial cell differentiation The process in which a venous blood vessel endothelial cell acquires specialized features of a lymphatic vessel endothelial cell, a thin flattened cell that lines the inside surfaces of lymph vessels. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T03:45:20Z biological_process owl:Class GO:0004849 biolink:NamedThing uridine kinase activity Catalysis of the reaction: ATP + uridine = ADP + UMP. tmpzr1t_l9r_go_relaxed.owl uridine-cytidine kinase activity|uridine kinase (phosphorylating)|pyrimidine ribonucleoside kinase activity|uridine kinase reaction|ATP:uridine 5'-phosphotransferase activity|uridine monophosphokinase activity|uridine phosphokinase activity RHEA:16825|Reactome:R-HSA-8954327|EC:2.7.1.48|MetaCyc:URIDINEKIN-RXN molecular_function owl:Class GO:0006297 biolink:NamedThing nucleotide-excision repair, DNA gap filling Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061739 biolink:NamedThing protein lipidation involved in autophagosome assembly The protein lipidation process by which phosphatidylethanolamine is conjugated to a protein of the ATG8 family, leading to membrane insertion of the protein as a step in autophagosome assembly. tmpzr1t_l9r_go_relaxed.owl dph 2015-10-14T12:02:01Z biological_process owl:Class GO:0030219 biolink:NamedThing megakaryocyte differentiation The process in which a myeloid precursor cell acquires specializes features of a megakaryocyte. tmpzr1t_l9r_go_relaxed.owl megakaryocyte cell differentiation biological_process owl:Class GO:0016321 biolink:NamedThing female meiosis chromosome segregation The cell cycle process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during the meiotic cell cycle in a female. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008354 biolink:NamedThing germ cell migration The orderly movement of a cell specialized to produce haploid gametes through the embryo from its site of production to the place where the gonads will form. tmpzr1t_l9r_go_relaxed.owl primordial germ cell migration|germ-cell migration biological_process owl:Class GO:0061231 biolink:NamedThing mesonephric glomerulus vasculature development The biological process whose specific outcome is the progression of a mesonephric glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the mesonephric glomerulus vasculature and ends with the mature structure. The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:47:06Z biological_process owl:Class GO:0009846 biolink:NamedThing pollen germination The physiological and developmental changes that occur in a heterosporous plant pollen grain, beginning with hydration and terminating with the emergence of the pollen tube through the aperture. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022616 biolink:NamedThing DNA strand elongation The DNA metabolic process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12633 biological_process owl:Class GO:0061643 biolink:NamedThing chemorepulsion of axon The process in which a neuron growth cone is directed to a specific target site in response to a repulsive chemical cue. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-29T08:35:40Z biological_process owl:Class GO:0002419 biolink:NamedThing T cell mediated cytotoxicity directed against tumor cell target The directed killing of a tumor cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte mediated cytotoxicity directed against tumor cell target|T-cell mediated cytotoxicity directed against tumor cell target|T lymphocyte mediated cytotoxicity directed against tumor cell target Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in induction of apoptosis in the target cell. biological_process owl:Class GO:0061262 biolink:NamedThing mesonephric renal vesicle formation The developmental process pertaining to the initial formation of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mesonephros formation dph 2010-08-30T02:41:20Z biological_process owl:Class GO:1901614 biolink:NamedThing positive regulation of terminal button organization Any process that activates or increases the frequency, rate or extent of terminal button organization. tmpzr1t_l9r_go_relaxed.owl up-regulation of synaptic bouton organization|up regulation of terminal button organization|up-regulation of terminal bouton organization|positive regulation of presynaptic bouton organization|upregulation of terminal button organization|up-regulation of terminal button organisation|up-regulation of terminal button organization|activation of presynaptic bouton organization|positive regulation of terminal bouton organization|activation of bouton organization|upregulation of bouton organization|positive regulation of bouton organization|up regulation of bouton organization|up regulation of terminal button organisation|up regulation of terminal bouton organization|up regulation of presynaptic bouton organization|activation of terminal button organization|upregulation of synaptic bouton organization|activation of terminal button organisation|up regulation of synaptic bouton organization|positive regulation of terminal button organisation|positive regulation of synaptic bouton organization|upregulation of terminal button organisation|activation of synaptic bouton organization|up-regulation of presynaptic bouton organization|activation of terminal bouton organization|upregulation of presynaptic bouton organization|up-regulation of bouton organization|upregulation of terminal bouton organization lb 2012-11-13T10:40:58Z biological_process owl:Class GO:0033278 biolink:NamedThing cell proliferation in midbrain The multiplication or reproduction of cells, resulting in the expansion of a cell population in the midbrain. tmpzr1t_l9r_go_relaxed.owl mesencepahalic cell proliferation|cell proliferation in mesencephalon biological_process owl:Class GO:0042730 biolink:NamedThing fibrinolysis A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Fibrinolysis biological_process owl:Class GO:1905457 biolink:NamedThing negative regulation of lymphoid progenitor cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of lymphoid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphoid progenitor cell differentiation|inhibition of lymphoid progenitor cell differentiation|down-regulation of lymphoid progenitor cell differentiation|down regulation of lymphoid progenitor cell differentiation rz 2016-09-16T12:32:48Z biological_process owl:Class GO:0060767 biolink:NamedThing epithelial cell proliferation involved in prostate gland development The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population that contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-08T07:32:34Z biological_process owl:Class GO:0019003 biolink:NamedThing GDP binding Binding to GDP, guanosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036364 biolink:NamedThing transforming growth factor beta1 activation The release of transforming growth factor beta1 (TGF-beta1) from its latent state. tmpzr1t_l9r_go_relaxed.owl TGFB1 activation|TGF-beta 1 activation|transforming growth factor-beta1 activation|L-TGF-beta 1 activation|latent-TGF-beta1 activation|TGFbeta 1 activation bf 2012-09-24T10:09:02Z biological_process owl:Class GO:0034982 biolink:NamedThing mitochondrial protein processing The peptide cleavage of mitochondrial proteins, including cleavage contributing to their import. tmpzr1t_l9r_go_relaxed.owl mitochondrial protein modification biological_process owl:Class GO:1900458 biolink:NamedThing negative regulation of brassinosteroid mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of brassinosteroid mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of brassinosteroid mediated signaling pathway|inhibition of brassinosteroid mediated signaling pathway|negative regulation of brassinosteroid mediated signalling|down-regulation of brassinosteroid mediated signaling pathway|inhibition of brassinosteroid mediated signalling|down regulation of brassinosteroid mediated signalling|downregulation of brassinosteroid mediated signalling|down regulation of brassinosteroid mediated signaling pathway|down-regulation of brassinosteroid mediated signalling dhl 2012-05-01T06:12:13Z biological_process owl:Class GO:0009742 biolink:NamedThing brassinosteroid mediated signaling pathway A series of molecular signals mediated by the detection of brassinosteroid. tmpzr1t_l9r_go_relaxed.owl brassinosteroid mediated signalling biological_process owl:Class GO:0050845 biolink:NamedThing teichuronic acid biosynthetic process The chemical reactions and pathways resulting in the formation of teichuronic acid, a polymer containing chains of uronic acids and N-acetylglucosamine found in the cell wall, membrane or capsule of Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl teichuronic acid biosynthesis|teichuronic acid synthesis|teichuronic acid formation|teichuronic acid anabolism biological_process owl:Class GO:1904496 biolink:NamedThing positive regulation of substance P secretion, neurotransmission Any process that activates or increases the frequency, rate or extent of substance P secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl upregulation of substance P secretion, neurotransmission|activation of substance P secretion, neurotransmission|up regulation of substance P secretion, neurotransmission|up-regulation of substance P secretion, neurotransmission sl 2015-07-21T19:09:16Z biological_process owl:Class GO:0055011 biolink:NamedThing atrial cardiac muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a cardiac muscle cell in the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte differentiation|atrial heart muscle cell differentiation biological_process owl:Class GO:0036504 biolink:NamedThing Golgi membrane fusion The joining of two lipid bilayers that surround the Golgi apparatus to form a single Golgi membrane. tmpzr1t_l9r_go_relaxed.owl post-mitotic fusion of Golgi membranes|membrane fusion involved in Golgi reassembly bf 2015-05-21T10:05:06Z biological_process owl:Class GO:0090168 biolink:NamedThing Golgi reassembly The reformation of the Golgi following its breakdown and partitioning contributing to Golgi inheritance. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T09:15:11Z biological_process owl:Class GO:0034253 biolink:NamedThing positive regulation of cellular amide catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides. tmpzr1t_l9r_go_relaxed.owl positive regulation of amide breakdown|positive regulation of amide degradation|positive regulation of amide catabolism biological_process owl:Class GO:0015440 biolink:NamedThing ABC-type peptide transporter activity Catalysis of the reaction: ATP + H2O + peptide(in) = ADP + phosphate + peptide(out). Peptides exported include alpha-hemolysin, cyclolysin, colicin V and siderophores from Gram-negative bacteria, and bacteriocin, subtilin, competence factor and pediocin from Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled peptide transmembrane transporter activity|peptide-transporting ATPase activity|peptide ABC transporter|ATP-dependent peptide transmembrane transporter activity MetaCyc:3.6.3.43-RXN|EC:7.4.2.5|RHEA:14429 molecular_function owl:Class GO:0061265 biolink:NamedThing mesonephric nephron tubule epithelial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the mesonephric nephron tubule as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T03:02:09Z biological_process owl:Class GO:0021992 biolink:NamedThing cell proliferation involved in neural plate elongation The process of expansion of cell numbers in the neural plate due to cell division of progenitor cells preferentially in the rostrocaudal direction, resulting in the elongation of the tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000152 biolink:NamedThing nuclear ubiquitin ligase complex A ubiquitin ligase complex found in the nucleus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044385 biolink:NamedThing integral to membrane of host cell Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. Occurring in a host cell. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-13T04:08:03Z cellular_component owl:Class GO:1900408 biolink:NamedThing negative regulation of cellular response to oxidative stress Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl downregulation of adaptive response to oxidative stress|inhibition of adaptive response to oxidative stress|negative regulation of adaptive response to oxidative stress|down regulation of cellular response to oxidative stress|downregulation of cellular response to oxidative stress|inhibition of cellular response to oxidative stress|down-regulation of adaptive response to oxidative stress|down regulation of adaptive response to oxidative stress|down-regulation of cellular response to oxidative stress mah 2012-04-20T03:31:05Z biological_process owl:Class GO:0006930 biolink:NamedThing substrate-dependent cell migration, cell extension The formation of a cell surface protrusion, such as a lamellipodium or filopodium, at the leading edge of a migrating cell. tmpzr1t_l9r_go_relaxed.owl substrate-bound cell migration, cell extension biological_process owl:Class GO:0097188 biolink:NamedThing dentin mineralization The process in which calcium salts are deposited into the calcareous tooth structure known as dentin. tmpzr1t_l9r_go_relaxed.owl dentine mineralization pr 2011-11-21T09:05:43Z biological_process owl:Class GO:1905319 biolink:NamedThing mesenchymal stem cell migration The orderly movement of a mesenchymal stem cell from one site to another. tmpzr1t_l9r_go_relaxed.owl sl 2016-07-14T17:13:02Z biological_process owl:Class GO:0060603 biolink:NamedThing mammary gland duct morphogenesis The process in which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T09:22:25Z biological_process owl:Class GO:0048826 biolink:NamedThing cotyledon morphogenesis The process in which the anatomical structures of the cotyledon are generated and organized. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005895 biolink:NamedThing interleukin-5 receptor complex A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3. tmpzr1t_l9r_go_relaxed.owl IL-5 receptor complex cellular_component owl:Class GO:0019911 biolink:NamedThing structural constituent of myelin sheath The action of a molecule that contributes to the structural integrity of the myelin sheath of a nerve. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043209 biolink:NamedThing myelin sheath An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system. tmpzr1t_l9r_go_relaxed.owl astrocyte sheath|oligodendrocyte myelin sheath|Schwann cell myelin sheath FMA:62983|NIF_Subcellular:sao593830697|Wikipedia:Myelin cellular_component owl:Class GO:0051260 biolink:NamedThing protein homooligomerization The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. tmpzr1t_l9r_go_relaxed.owl protein homooligomer formation|protein homooligomerization activity|protein homooligomer biosynthetic process|protein homooligomer biosynthesis|protein homooligomer assembly biological_process owl:Class GO:0051031 biolink:NamedThing tRNA transport The directed movement of tRNA, transfer ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007395 biolink:NamedThing dorsal closure, spreading of leading edge cells Dorsally-directed movement of a cell at the leading edge of the epithelium over the amnioserosa. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038031 biolink:NamedThing non-canonical Wnt signaling pathway via JNK cascade The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, where the signal is passed on via the JNK cascade. tmpzr1t_l9r_go_relaxed.owl non-canonical Wnt receptor signalling pathway via JNK cascade|non-canonical Wnt-activated signaling pathway via JNK cascade|non-canonical Wnt receptor signaling pathway via JNK cascade bf 2011-09-08T01:57:10Z biological_process owl:Class GO:0031105 biolink:NamedThing septin complex A protein complex containing septins. Typically, these complexes contain multiple septins and are oligomeric. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000534 biolink:NamedThing positive regulation of renal albumin absorption Any process that activates or increases the frequency, rate or extent of renal albumin absorption. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-24T03:28:14Z biological_process owl:Class GO:0061371 biolink:NamedThing determination of heart left/right asymmetry Determination of the asymmetric location of the heart with respect to the left and right halves of the organism. tmpzr1t_l9r_go_relaxed.owl determination of cardiac left/right asymmetry dph 2010-11-03T02:13:58Z biological_process owl:Class GO:0021712 biolink:NamedThing candelabrum cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature candelabrum cell. Differentiation includes the processes involved in commitment of a neuroblast to a candelabrum cell fate. A candelabrum cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070209 biolink:NamedThing ASTRA complex A protein complex that is part of the chromatin remodeling machinery; the acronym stands for ASsembly of Tel, Rvb and Atm-like kinase. In Saccharomyces cerevisiae this complex includes Rvb1p, Rvb2p, Tra1p, Tel2p, Asa1p, Ttilp and Tti2p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061370 biolink:NamedThing testosterone biosynthetic process The chemical reactions and pathways resulting in the formation of testosterone, an androgen having 17beta-hydroxy and 3-oxo groups, together with unsaturation at C-4 C-5. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-27T02:50:48Z biological_process owl:Class GO:0089722 biolink:NamedThing phosphoenolpyruvate transmembrane transport The directed movement of phosphoenolpytuvate across a membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061137 biolink:NamedThing bud dilation The process in which a branch bud increases radially. A branch bud is the initial area of outgrowth in the formation of a new branch. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-20T07:54:42Z biological_process owl:Class GO:0019834 biolink:NamedThing phospholipase A2 inhibitor activity Binds to and stops, prevents or reduces the activity of phospholipase A2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140380 biolink:NamedThing psilocybin biosynthetic process The chemical reactions and pathways resulting in the formation of psilocybin, a psychotropic tryptamine-derived natural product. tmpzr1t_l9r_go_relaxed.owl pg 2019-11-20T10:03:05Z biological_process owl:Class GO:0140383 biolink:NamedThing 4-hydroxytryptamine kinase activity Catalysis of the reaction: 4-hydroxytryptamine + ATP = 4-hydoxytryptamine 4-phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl RHEA:55564|EC:2.7.1.222 pg 2019-11-20T10:30:05Z molecular_function owl:Class GO:0004709 biolink:NamedThing MAP kinase kinase kinase activity Catalysis of the phosphorylation and activation of a MAP kinase kinase; each MAP kinase kinase can be phosphorylated by any of several MAP kinase kinase kinases. tmpzr1t_l9r_go_relaxed.owl MAP3K|MLTK|MEKK|MEK kinase activity|MEKK2|ATP:protein phosphotransferase (MAPKKKK-activated) activity|MLK-like mitogen-activated protein triple kinase activity|Mil/Raf|cRaf|REKS|MEKK1|STK28|MEKK activity|MLTKb|mitogen-activated protein kinase kinase kinase activity|MAPK/ERK kinase kinase activity|MEKK3|cMos|MLTKa|MAPKKK activity Reactome:R-HSA-727819|Reactome:R-HSA-451649|Reactome:R-HSA-392530|MetaCyc:2.7.11.25-RXN|EC:2.7.11.25|Reactome:R-HSA-168184|Reactome:R-HSA-933530|Reactome:R-HSA-450337|Reactome:R-HSA-450346|Reactome:R-HSA-2730887 GO:0004710 molecular_function owl:Class GO:0036483 biolink:NamedThing neuron intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a neuron. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. tmpzr1t_l9r_go_relaxed.owl ER stress-induced neuron intrinsic apoptotic signaling pathway|ER stress-induced neuron apoptosis|endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway|endoplasmic reticulum stress-induced neuron apoptosis bf 2014-08-14T13:33:23Z biological_process owl:Class GO:0003037 biolink:NamedThing detection of pH by carotid body chemoreceptor signaling The process in which information about the levels of hydrogen ions are received and are converted to a molecular signal by chemoreceptors in a carotid body. tmpzr1t_l9r_go_relaxed.owl detection of pH by carotid body chemoreceptor signalling biological_process owl:Class GO:0003029 biolink:NamedThing detection of hypoxic conditions in blood by carotid body chemoreceptor signaling The process in which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the carotid bodies. tmpzr1t_l9r_go_relaxed.owl detection of hypoxic conditions in blood by carotid body chemoreceptor signalling biological_process owl:Class GO:0030422 biolink:NamedThing production of siRNA involved in RNA interference Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. tmpzr1t_l9r_go_relaxed.owl RNA interference, production of guide RNAs|production of guide RNAs involved in RNA interference|RNA interference, production of siRNA biological_process owl:Class GO:0031641 biolink:NamedThing regulation of myelination Any process that modulates the frequency, rate or extent of the formation of a myelin sheath around nerve axons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070460 biolink:NamedThing thyroid-stimulating hormone secretion The regulated release of thyroid-stimulating hormone, a peptide hormone that stimulates the activity of the thyroid gland, from secretory granules in the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl TSH secretion|thyroid stimulating hormone secretion biological_process owl:Class GO:1905306 biolink:NamedThing positive regulation of cardiac myofibril assembly Any process that activates or increases the frequency, rate or extent of cardiac myofibril assembly. tmpzr1t_l9r_go_relaxed.owl activation of cardiac myofibril assembly|up-regulation of heart myofibril assembly|up regulation of heart myofibril assembly|positive regulation of cardiac myofibril development|activation of cardiac myofibril morphogenesis|up-regulation of cardiac myofibril assembly|up regulation of cardiac myofibril assembly|upregulation of cardiac myofibril assembly|positive regulation of cardiac myofibril morphogenesis|up-regulation of cardiac myofibril development|upregulation of cardiac myofibril morphogenesis|up-regulation of cardiac myofibril morphogenesis|upregulation of heart myofibril assembly|upregulation of cardiac myofibril development|up regulation of cardiac myofibril development|activation of cardiac myofibril development|up regulation of cardiac myofibril morphogenesis|positive regulation of heart myofibril assembly|activation of heart myofibril assembly rl 2016-07-06T10:02:07Z biological_process owl:Class GO:0140396 biolink:NamedThing 5'-hydroxyaverantin dehydrogenase activity Catalyzes the reaction: (1'S,5'S)-hydroxyaverantin + NAD(+) <=> 5'-oxoaverantin + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:35475|EC:1.1.1.352 pg 2019-11-29T08:56:49Z molecular_function owl:Class GO:2000144 biolink:NamedThing positive regulation of DNA-templated transcription, initiation Any process that activates or increases the frequency, rate or extent of DNA-templated transcription initiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of initiation of DNA-dependent transcription|positive regulation of transcription initiation, DNA-dependent|transcriptional transactivation|positive regulation of DNA-dependent transcription, initiation|transactivation mah 2010-10-01T09:11:43Z biological_process owl:Class GO:0070413 biolink:NamedThing trehalose metabolism in response to stress The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl trehalose metabolic process involved in response to stress biological_process owl:Class GO:0035143 biolink:NamedThing caudal fin morphogenesis The process in which the anatomical structures of the caudal fin are generated and organized. A caudal fin is an unpaired medial fin mounted at the caudal end of the fish, and is the main fin used for propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902102 biolink:NamedThing regulation of metaphase/anaphase transition of meiotic cell cycle Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of meiotic metaphase/anaphase transition jl 2013-05-02T12:45:38Z biological_process owl:Class GO:0021512 biolink:NamedThing spinal cord anterior/posterior patterning The process that regulates the coordinated growth and differentiation that establishes the non-random anterior-posterior spatial arrangement of the spinal cord. tmpzr1t_l9r_go_relaxed.owl spinal cord anterior-posterior patterning|spinal cord rostrocaudal patterning biological_process owl:Class GO:0021511 biolink:NamedThing spinal cord patterning The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021591 biolink:NamedThing ventricular system development The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021560 biolink:NamedThing abducens nerve development The process whose specific outcome is the progression of the abducens nerve over time, from its formation to the mature structure. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye. tmpzr1t_l9r_go_relaxed.owl CN VI development|cranial nerve 6 development|cranial nerve VI development biological_process owl:Class GO:0060185 biolink:NamedThing outer ear unfolding The opening and spreading out of the outer ear. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042473 biolink:NamedThing outer ear morphogenesis The process in which the anatomical structures of the outer ear are generated and organized. The outer ear is the part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036252 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to menadione Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a menadione stimulus. Menadione (also called vitamin K3) is a naphthoquinone having a methyl substituent at the 2-position. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter in response to menadione stress bf 2012-06-12T11:40:58Z biological_process owl:Class GO:0036245 biolink:NamedThing cellular response to menadione Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menadione stimulus. Menadione (also called vitamin K3) is a naphthoquinone having a methyl substituent at the 2-position. tmpzr1t_l9r_go_relaxed.owl cellular response to vitamin K3 bf 2012-05-28T10:23:02Z biological_process owl:Class GO:0034658 biolink:NamedThing isopropylmalate transmembrane transporter activity Enables the transfer of isopropylmalate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021502 biolink:NamedThing neural fold elevation formation The process in which the lateral borders of the neural plate begin to migrate upwards to form the neural folds, caused by the proliferation of the underlying mesoderm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001536 biolink:NamedThing radial spoke stalk Globular portion of the radial spoke that projects towards the central pair of microtubules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001534 biolink:NamedThing radial spoke Protein complex that links the outer microtubule doublet of the ciliary or flagellum axoneme with the sheath that surrounds the central pair of microtubules. Composed of a stalk that attaches to each doublet microtubule and a globular structure (spoke head) that projects toward the central pair of microtubules. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Radial_spoke cellular_component owl:Class GO:0015545 biolink:NamedThing bicyclomycin transmembrane transporter activity Enables the transfer of bicyclomycin from one side of a membrane to the other. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive. tmpzr1t_l9r_go_relaxed.owl bicyclomycin transporter activity|bicyclomycin/sulfathiazole:hydrogen antiporter activity molecular_function owl:Class GO:0015905 biolink:NamedThing bicyclomycin transmembrane transport The directed movement of bicyclomycin across a lipid bilayer, from one side of a membrane to the other. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive. tmpzr1t_l9r_go_relaxed.owl bicyclomycin transport biological_process owl:Class GO:1904087 biolink:NamedThing negative regulation of epiboly involved in gastrulation with mouth forming second Any process that stops, prevents or reduces the frequency, rate or extent of epiboly involved in gastrulation with mouth forming second. tmpzr1t_l9r_go_relaxed.owl downregulation of epiboly involved in gastrulation with mouth forming second|down-regulation of epiboly involved in gastrulation with mouth forming second|inhibition of epiboly involved in gastrulation with mouth forming second|down regulation of epiboly involved in gastrulation with mouth forming second dos 2015-03-25T11:17:41Z biological_process owl:Class GO:0008587 biolink:NamedThing imaginal disc-derived wing margin morphogenesis The process in which the anatomical structures of the imaginal disc-derived wing margin are generated and organized. The wing margin is a strip of cells in the third instar disc at the boundary between the presumptive dorsal and ventral surfaces of the wing blade. tmpzr1t_l9r_go_relaxed.owl wing margin morphogenesis See also the fly_anatomy.ontology term 'wing margin ; FBbt:00005378'. biological_process owl:Class GO:1903615 biolink:NamedThing positive regulation of protein tyrosine phosphatase activity Any process that activates or increases the frequency, rate or extent of protein tyrosine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of tyrosine O-phosphate phosphatase activity|activation of [phosphotyrosine]protein phosphatase activity|up regulation of protein tyrosine phosphatase activity|positive regulation of tyrosylprotein phosphatase activity|up regulation of protein-tyrosine-phosphatase activity|upregulation of protein-tyrosine-phosphate phosphohydrolase activity|activation of PTP-phosphatase activity|upregulation of phosphotyrosine phosphatase activity|upregulation of PTPase activity|activation of phosphotyrosylprotein phosphatase activity|positive regulation of protein phosphotyrosine phosphatase activity|up-regulation of [phosphotyrosine]protein phosphatase activity|up-regulation of tyrosine O-phosphate phosphatase activity|upregulation of [phosphotyrosine]protein phosphatase activity|up regulation of protein phosphotyrosine phosphatase activity|up-regulation of phosphoprotein phosphatase (phosphotyrosine) activity|up regulation of [phosphotyrosine]protein phosphatase activity|activation of protein tyrosine phosphatase activity|positive regulation of phosphotyrosine histone phosphatase activity|positive regulation of PTPase activity|up-regulation of PTP-phosphatase activity|up-regulation of PTPase activity|upregulation of protein-tyrosine-phosphatase activity|positive regulation of phosphotyrosine phosphatase activity|activation of phosphotyrosine protein phosphatase activity|up regulation of phosphotyrosine phosphatase activity|activation of tyrosylprotein phosphatase activity|up-regulation of tyrosylprotein phosphatase activity|positive regulation of protein-tyrosine-phosphate phosphohydrolase activity|up regulation of PTP-phosphatase activity|upregulation of phosphoprotein phosphatase (phosphotyrosine) activity|up-regulation of phosphotyrosylprotein phosphatase activity|activation of tyrosine O-phosphate phosphatase activity|activation of phosphotyrosine phosphatase activity|up regulation of tyrosylprotein phosphatase activity|up-regulation of protein-tyrosine-phosphatase activity|activation of protein phosphotyrosine phosphatase activity|up-regulation of protein phosphotyrosine phosphatase activity|upregulation of tyrosine O-phosphate phosphatase activity|positive regulation of phosphotyrosine protein phosphatase activity|upregulation of phosphotyrosine protein phosphatase activity|upregulation of phosphotyrosine histone phosphatase activity|activation of protein-tyrosine-phosphate phosphohydrolase activity|positive regulation of [phosphotyrosine]protein phosphatase activity|upregulation of protein phosphotyrosine phosphatase activity|up regulation of PTPase activity|activation of PTPase activity|positive regulation of PPT-phosphatase activity|positive regulation of phosphotyrosylprotein phosphatase activity|up-regulation of protein tyrosine phosphatase activity|up regulation of PPT-phosphatase activity|up-regulation of phosphotyrosine phosphatase activity|positive regulation of protein-tyrosine-phosphatase activity|up regulation of phosphoprotein phosphatase (phosphotyrosine) activity|upregulation of protein tyrosine phosphatase activity|up-regulation of protein-tyrosine-phosphate phosphohydrolase activity|upregulation of tyrosylprotein phosphatase activity|up regulation of tyrosine O-phosphate phosphatase activity|activation of PPT-phosphatase activity|up-regulation of phosphotyrosine histone phosphatase activity|positive regulation of PTP-phosphatase activity|up-regulation of PPT-phosphatase activity|up regulation of protein-tyrosine-phosphate phosphohydrolase activity|activation of protein-tyrosine-phosphatase activity|upregulation of phosphotyrosylprotein phosphatase activity|positive regulation of phosphoprotein phosphatase (phosphotyrosine) activity|upregulation of PTP-phosphatase activity|activation of phosphoprotein phosphatase (phosphotyrosine) activity|up regulation of phosphotyrosylprotein phosphatase activity|up regulation of phosphotyrosine histone phosphatase activity|activation of phosphotyrosine histone phosphatase activity|up regulation of phosphotyrosine protein phosphatase activity|upregulation of PPT-phosphatase activity|up-regulation of phosphotyrosine protein phosphatase activity sl 2014-11-18T01:11:55Z biological_process owl:Class GO:1901985 biolink:NamedThing positive regulation of protein acetylation Any process that activates or increases the frequency, rate or extent of protein acetylation. tmpzr1t_l9r_go_relaxed.owl upregulation of protein acetylation|positive regulation of protein amino acid acetylation|upregulation of protein amino acid acetylation|activation of protein amino acid acetylation|activation of protein acetylation|up regulation of protein amino acid acetylation|up regulation of protein acetylation|up-regulation of protein amino acid acetylation|up-regulation of protein acetylation ss 2013-03-14T00:40:19Z biological_process owl:Class GO:0060830 biolink:NamedThing ciliary receptor clustering involved in smoothened signaling pathway Grouping of smoothened or patched receptors in a cilium, contributing to the smoothened signaling pathway. tmpzr1t_l9r_go_relaxed.owl ciliary receptor clustering involved in hedgehog signaling pathway|ciliary receptor clustering involved in smoothened signalling pathway|ciliary receptor clustering involved in hh signaling pathway dph 2009-08-11T02:06:33Z biological_process owl:Class GO:1905524 biolink:NamedThing negative regulation of protein autoubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein autoubiquitination. tmpzr1t_l9r_go_relaxed.owl down regulation of protein auto-ubiquitinylation|down regulation of protein self-ubiquitinylation|down regulation of protein auto-ubiquitination|down regulation of protein autoubiquitination|down regulation of protein autoubiquitinylation|downregulation of protein auto-ubiquitinylation|negative regulation of protein self-ubiquitinylation|downregulation of protein auto-ubiquitination|negative regulation of protein autoubiquitinylation|downregulation of protein autoubiquitinylation|inhibition of protein autoubiquitinylation|down-regulation of protein autoubiquitinylation|down-regulation of protein autoubiquitination|negative regulation of protein auto-ubiquitination|downregulation of protein self-ubiquitinylation|inhibition of protein auto-ubiquitinylation|down-regulation of protein auto-ubiquitinylation|inhibition of protein autoubiquitination|downregulation of protein autoubiquitination|inhibition of protein auto-ubiquitination|negative regulation of protein self-ubiquitination|inhibition of protein self-ubiquitinylation|downregulation of protein self-ubiquitination|negative regulation of protein auto-ubiquitinylation|down regulation of protein self-ubiquitination|inhibition of protein self-ubiquitination|down-regulation of protein self-ubiquitinylation|down-regulation of protein self-ubiquitination|down-regulation of protein auto-ubiquitination bc 2016-10-04T10:53:25Z biological_process owl:Class GO:0051865 biolink:NamedThing protein autoubiquitination The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink. tmpzr1t_l9r_go_relaxed.owl protein auto-ubiquitination|protein self-ubiquitinylation|protein autoubiquitinylation|protein self-ubiquitination|protein auto-ubiquitinylation biological_process owl:Class GO:0061046 biolink:NamedThing regulation of branching involved in lung morphogenesis Any process that modulates the rate, frequency, or extent of the process in which a highly ordered sequence of patterning events generates the branched structures of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:41:38Z biological_process owl:Class GO:0098512 biolink:NamedThing detection of humidity stimulus involved in sensory perception The series of events in which a humidity stimulus is received and converted into a molecular signal as part of the sensory perception of humidity. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:09:25Z biological_process owl:Class GO:0098509 biolink:NamedThing sensory perception of humidity The series of events required for an organism to detect some level of humidity in its environment, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl hygrosensory perception Note, this is not classified under 'detection of chemical stimulus' as there are various potential mechanisms of hygroperception including detection of mechanical stimulus. dos 2013-09-25T13:52:27Z biological_process owl:Class GO:0007282 biolink:NamedThing cystoblast division Any of the rounds of incomplete mitosis undergone by a cystoblast to form a cyst of interconnected cells. tmpzr1t_l9r_go_relaxed.owl cystoblast cell division biological_process owl:Class GO:0086048 biolink:NamedThing membrane depolarization during bundle of His cell action potential The process in which bundle of His cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl membrane depolarization during bundle of His cardiac muscle cell action potential dph 2011-11-16T10:56:26Z biological_process owl:Class GO:0097735 biolink:NamedThing DIM/DIP cell wall layer A section of the Actinobacterium-type cell wall composed of (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate, diphthioceranate and other compounds. tmpzr1t_l9r_go_relaxed.owl pr 2016-10-05T14:55:30Z cellular_component owl:Class GO:0009275 biolink:NamedThing Gram-positive-bacterium-type cell wall A layer of peptidoglycan found outside of the cytoplasmic membrane. The peptidoglycan is relatively thick (20-80nm) and retains the primary stain of the Gram procedure, thus cells appear blue after Gram stain. The cell walls often contain teichoic acids (acidic anionic polysaccharides) bound to the peptidoglycan. Examples of this component are found in Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl cell wall of Gram-positive Bacteria|20-80nm peptidoglycan-based cell wall cellular_component owl:Class GO:1903885 biolink:NamedThing negative regulation of chemokine (C-C motif) ligand 20 production Any process that stops, prevents or reduces the frequency, rate or extent of chemokine (C-C motif) ligand 20 production. tmpzr1t_l9r_go_relaxed.owl down regulation of CCL-20 production|negative regulation of CCL-20 production|inhibition of CCL20 production|inhibition of CCL-20 production|downregulation of chemokine (C-C motif) ligand 20 production|downregulation of CCL20 production|down regulation of C-C motif chemokine 20 production|down regulation of CCL20 production|inhibition of chemokine (C-C motif) ligand 20 production|down-regulation of chemokine (C-C motif) ligand 20 production|downregulation of CCL-20 production|negative regulation of C-C motif chemokine 20 production|downregulation of C-C motif chemokine 20 production|inhibition of C-C motif chemokine 20 production|negative regulation of CCL20 production|down regulation of chemokine (C-C motif) ligand 20 production|down-regulation of CCL-20 production|down-regulation of C-C motif chemokine 20 production|down-regulation of CCL20 production krc 2015-02-06T16:31:11Z biological_process owl:Class GO:0036392 biolink:NamedThing chemokine (C-C motif) ligand 20 production The appearance of chemokine (C-C motif) ligand 20 (CCL20) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL-20 production|C-C motif chemokine 20 production|CCL20 production bf 2013-06-17T14:42:07Z biological_process owl:Class GO:0006362 biolink:NamedThing transcription elongation from RNA polymerase I promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA elongation from Pol I promoter|RNA polymerase I transcription elongation factor activity biological_process owl:Class GO:1990950 biolink:NamedThing metaphase/anaphase transition of meiosis II The cell cycle process in which a cell progresses from metaphase to anaphase as part of meiosis II. tmpzr1t_l9r_go_relaxed.owl second meiotic metaphase/anaphase transition|meiosis II metaphase/anaphase transition mah 2016-04-25T15:28:51Z biological_process owl:Class GO:1904416 biolink:NamedThing negative regulation of xenophagy Any process that stops, prevents or reduces the frequency, rate or extent of xenophagy. tmpzr1t_l9r_go_relaxed.owl inhibition of xenophagy|down-regulation of xenophagy|down regulation of xenophagy|downregulation of xenophagy An example of this is mouse Tbk1 (UniProt symbol, Q9WUN2) in PMID:21617041 (inferred from mutant phenotype). pad 2015-06-29T12:30:53Z biological_process owl:Class GO:0098792 biolink:NamedThing xenophagy The selective autophagy process in which a region of cytoplasm containing an intracellular pathogen or some part of an intracellular pathogen (e.g. viral capsid) is enclosed in a double membrane bound autophagosome, which then fuses with the lysosome leading to degradation of the contents. tmpzr1t_l9r_go_relaxed.owl While making xenophagy a subclass of (macro)autophagy may seem to directly contradict the definition of autophagy (literally self eating), it is clear that the same pathway is involved as in macroautophagy that doesn't target foreign material: formation of double-membrane-bounded autophagosomes that enclose a region of cytoplasm for degradation. biological_process owl:Class GO:0052314 biolink:NamedThing phytoalexin metabolic process The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl phytoalexin metabolism biological_process owl:Class GO:0030901 biolink:NamedThing midbrain development The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles). tmpzr1t_l9r_go_relaxed.owl mesencephalon development biological_process owl:Class GO:0030501 biolink:NamedThing positive regulation of bone mineralization Any process that activates or increases the frequency, rate or extent of bone mineralization. tmpzr1t_l9r_go_relaxed.owl up-regulation of bone mineralization|up regulation of bone mineralization|activation of bone mineralization|upregulation of bone mineralization|stimulation of bone mineralization biological_process owl:Class GO:0075247 biolink:NamedThing aeciospore formation The process in which a dikaryotic spore of typically a rust fungus is produced in an aecium; in heteroecious rusts, the aeciospore is a spore stage that infects the alternate host. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061400 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to calcium ion Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to a calcium ion stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-10T09:36:02Z biological_process owl:Class GO:0071277 biolink:NamedThing cellular response to calcium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to Ca2+ ion mah 2009-12-10T03:55:01Z biological_process owl:Class GO:0015499 biolink:NamedThing formate transmembrane transporter activity Enables the transfer of formate from one side of a membrane to the other. Formate is also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. tmpzr1t_l9r_go_relaxed.owl formate uptake permease activity|formate uptake transmembrane transporter activity RHEA:29679 GO:0015659 molecular_function owl:Class GO:0033030 biolink:NamedThing negative regulation of neutrophil apoptotic process Any process that stops, prevents, or reduces the frequency, rate, or extent of neutrophil apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of neutrophil apoptosis|negative regulation of neutrophil apoptosis|down-regulation of neutrophil apoptosis|downregulation of neutrophil apoptosis|down regulation of neutrophil apoptosis biological_process owl:Class GO:0001781 biolink:NamedThing neutrophil apoptotic process Any apoptotic process in a neutrophil, any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. tmpzr1t_l9r_go_relaxed.owl programmed cell death of neutrophils by apoptosis|neutrophil apoptosis|neutrophil programmed cell death by apoptosis|apoptosis of neutrophils|programmed cell death, neutrophils biological_process owl:Class GO:0032937 biolink:NamedThing SREBP-SCAP-Insig complex A protein complex formed by the association of sterol regulatory element binding protein (SREBP), SREBP-cleavage-activating protein (SCAP), and an Insig protein (Insig-1 or Insig-2) in the ER membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090520 biolink:NamedThing sphingolipid mediated signaling pathway A series of molecular signals mediated by a sphingolipid. tmpzr1t_l9r_go_relaxed.owl sphingolipid signaling pathway|sphingolipid-mediated signaling pathway|sphingosine signaling pathway|ceramide signaling pathway|sphingolipid mediated signal transduction|ceramide 1-phosphate signaling pathway tb 2013-01-08T09:30:54Z biological_process owl:Class GO:0043675 biolink:NamedThing sculpture element The third layer of the sexine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060105 biolink:NamedThing epicuticle of collagen and cuticulin-based cuticle extracellular matrix A lipid-containing layer of cuticle that lies between the cortical layer and the surface coat. An example of this component is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl epicuticle of collagen and cuticulin-based exoskeleton extracellular matrix cellular_component owl:Class GO:0048913 biolink:NamedThing anterior lateral line nerve glial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glial cell in the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014028 biolink:NamedThing notochord formation The formation of the notochord from the chordamesoderm. The notochord is composed of large cells packed within a firm connective tissue sheath and is found in all chordates at the ventral surface of the neural tube. In vertebrates, the notochord contributes to the vertebral column. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140511 biolink:NamedThing mitotic nuclear bridge stalk Either of the regions of a mitotic nuclear bridge proximal to the main portion of each daughter nucleus. The nuclear envelope in the stalk regions is depleted of nuclear pore complexes. tmpzr1t_l9r_go_relaxed.owl pg 2020-09-07T10:06:23Z cellular_component owl:Class GO:0009556 biolink:NamedThing microsporogenesis The process in which the microsporocyte undergoes meiosis, giving rise to four haploid microspores. tmpzr1t_l9r_go_relaxed.owl microspore development biological_process owl:Class GO:0031298 biolink:NamedThing replication fork protection complex A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl Swi1-Swi3 complex|TIMELESS-TIPIN complex|replisome progression complex cellular_component owl:Class GO:0043596 biolink:NamedThing nuclear replication fork The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010578 biolink:NamedThing regulation of adenylate cyclase activity involved in G protein-coupled receptor signaling pathway Any process that modulates the frequency, rate or extent of adenylate cyclase (AC) activity that is an integral part of a G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of adenylate cyclase activity involved in G-protein signaling pathway|regulation of adenylate cyclase activity involved in G-protein signalling|regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway biological_process owl:Class GO:0007188 biolink:NamedThing adenylate cyclase-modulating G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds through activation or inhibition of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl G protein signaling, coupled to cAMP nucleotide second messenger|G-protein signalling, coupled to cAMP nucleotide second messenger|G protein signaling, coupled to cyclic AMP nucleotide second messenger|G-protein signaling, coupled to cyclic AMP nucleotide second messenger|G protein signalling, coupled to cAMP nucleotide second messenger|G-protein signalling, coupled to cyclic AMP nucleotide second messenger|G protein signalling, coupled to cyclic AMP nucleotide second messenger|GPCR signaling pathway via cAMP second messenger|adenylate cyclase-modulating GPCR signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|GPCR signaling pathway via modulation of adenylate cyclase activity This term is intended to cover steps in a GPCR signaling pathway both upstream and downstream of adenylate-cyclase activity. For steps upstream of adenylate cyclase activity, consider instead annotating to 'regulation of adenylate cyclase activity involved in G protein-coupled receptor signaling pathway ; GO:0010578. biological_process owl:Class GO:0042713 biolink:NamedThing sperm ejaculation The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070074 biolink:NamedThing mononeme A secretory organelle that forms part of the apical complex; a small, threadlike structure located is close proximity to the subpellicular microtubules. Its contents include a rhomboid protease (PfROM1 in Plasmodium falciparum) that moves from the lateral asymmetric localization to the merozoite apical pole and the posterior pole upon release of merozoites from schizonts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000597 biolink:NamedThing positive regulation of optic nerve formation Any process that activates or increases the frequency, rate or extent of optic nerve formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of CN II biosynthesis|positive regulation of CN II formation yaf 2011-04-11T03:41:39Z biological_process owl:Class GO:0021634 biolink:NamedThing optic nerve formation The process that gives rise to the optic nerve. This process pertains to the initial formation of a structure from unspecified parts. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain. tmpzr1t_l9r_go_relaxed.owl CN II formation|CN II biosynthesis biological_process owl:Class GO:0043276 biolink:NamedThing anoikis Apoptosis triggered by inadequate or inappropriate adherence to substrate e.g. after disruption of the interactions between normal epithelial cells and the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl suspension induced apoptosis|detachment induced cell death Wikipedia:Anoikis biological_process owl:Class GO:0075266 biolink:NamedThing negative regulation of oogonium development Any process that stops, prevents, or reduces the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061846 biolink:NamedThing dendritic spine cytoplasm The region of the neuronal cytoplasm located in dendritic spines. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002614 biolink:NamedThing negative regulation of monocyte antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of monocyte antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl down-regulation of monocyte antigen processing and presentation|inhibition of monocyte antigen processing and presentation|down regulation of monocyte antigen processing and presentation|downregulation of monocyte antigen processing and presentation biological_process owl:Class GO:0002471 biolink:NamedThing monocyte antigen processing and presentation The process in which a monocyte expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005674 biolink:NamedThing transcription factor TFIIF complex A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032429 biolink:NamedThing regulation of phospholipase A2 activity Any process that modulates the activity of the enzyme phospholipase A2. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009548 biolink:NamedThing plasmodesmatal plasma membrane The portion of the plasma membrane surrounding a plasmodesma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903434 biolink:NamedThing negative regulation of constitutive secretory pathway Any process that stops, prevents or reduces the frequency, rate or extent of constitutive secretory pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of constitutive secretory pathway|inhibition of constitutive secretory pathway|down-regulation of constitutive secretory pathway|downregulation of constitutive secretory pathway als 2014-09-15T15:07:40Z biological_process owl:Class GO:0045054 biolink:NamedThing constitutive secretory pathway A process of exocytosis found in all eukaryotic cells, in which transport vesicles destined for the plasma membrane leave the trans-Golgi network in a steady stream. Upon exocytosis, the membrane proteins and lipids in these vesicles provide new components for the plasma membrane, and the soluble proteins inside the vesicles are released into the extracellular space. tmpzr1t_l9r_go_relaxed.owl constitutive exocytosis biological_process owl:Class GO:0090279 biolink:NamedThing regulation of calcium ion import Any process that modulates the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl regulation of transmembrane calcium influx tb 2010-02-08T05:11:20Z biological_process owl:Class GO:1901375 biolink:NamedThing acetate ester transmembrane transporter activity Enables the transfer of an acetate ester from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-28T10:47:08Z molecular_function owl:Class GO:1901584 biolink:NamedThing tetrapeptide transmembrane transporter activity Enables the transfer of tetrapeptide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-06T15:40:10Z molecular_function owl:Class GO:1901583 biolink:NamedThing tetrapeptide transmembrane transport The directed movement of tetrapeptide across a membrane. tmpzr1t_l9r_go_relaxed.owl tetrapeptide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. jl 2012-11-06T15:40:02Z biological_process owl:Class GO:0002177 biolink:NamedThing manchette A tubular array of microtubules that extends from the perinuclear ring surrounding the spermatid nucleus to the flagellar axoneme. The manchette may also contain F-actin filaments. tmpzr1t_l9r_go_relaxed.owl hjd 2010-12-01T02:31:43Z cellular_component owl:Class GO:0048403 biolink:NamedThing brain-derived neurotrophic factor binding Binding to brain-derived neurotrophic factor. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKB receptor activity|BDNF binding molecular_function owl:Class GO:0051190 biolink:NamedThing prosthetic group catabolic process The chemical reactions and pathways resulting in the breakdown of a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. tmpzr1t_l9r_go_relaxed.owl prosthetic group degradation|prosthetic group breakdown|coenzyme and prosthetic group catabolism|coenzyme and prosthetic group catabolic process|prosthetic group catabolism biological_process owl:Class GO:0010787 biolink:NamedThing COPI coating of Golgi vesicle, inter-Golgi cisterna The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of inter-Golgi cisterna transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110116 biolink:NamedThing regulation of compound eye photoreceptor cell differentiation Any process that modulates the frequency, rate or extent of compound eye photoreceptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-16T18:08:49Z biological_process owl:Class GO:1905418 biolink:NamedThing positive regulation of amoeboid sperm motility Any process that activates or increases the frequency, rate or extent of amoeboid sperm motility. tmpzr1t_l9r_go_relaxed.owl activation of amoeboid sperm movement|activation of ameboid sperm movement|upregulation of amoeboid sperm movement|up-regulation of amoeboid sperm movement|activation of ameboid sperm motility|upregulation of ameboid sperm movement|up regulation of ameboid sperm motility|positive regulation of ameboid sperm motility|upregulation of ameboid sperm motility|up-regulation of amoeboid sperm motility|up regulation of amoeboid sperm movement|positive regulation of amoeboid sperm movement|up-regulation of ameboid sperm motility|up-regulation of ameboid sperm movement|activation of amoeboid sperm motility|up regulation of amoeboid sperm motility|up regulation of ameboid sperm movement|upregulation of amoeboid sperm motility|positive regulation of ameboid sperm movement pr 2016-09-01T11:29:03Z biological_process owl:Class GO:0035506 biolink:NamedThing negative regulation of myosin light chain kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of myosin light chain kinase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:49:21Z biological_process owl:Class GO:0004687 biolink:NamedThing myosin light chain kinase activity Catalysis of the reaction: ATP + myosin-light-chain = ADP + myosin-light-chain phosphate. tmpzr1t_l9r_go_relaxed.owl myosin light-chain kinase (phosphorylating)|myosin light-chain kinase (phosphorylating) activity|myosin light-chain kinase activity|MLCkase activity|ATP:myosin-light-chain O-phosphotransferase|ATP:myosin-light-chain O-phosphotransferase activity|calcium/calmodulin-dependent myosin light chain kinase activity|myosin light-chain kinase|smooth-muscle-myosin-light-chain kinase activity|myosin light chain protein kinase activity|myosin kinase activity|myosin-light-chain kinase activity|MLCK|STK18 Reactome:R-HSA-5668978|EC:2.7.11.18|RHEA:22004|MetaCyc:2.7.11.18-RXN|Reactome:R-HSA-445813 molecular_function owl:Class GO:0010339 biolink:NamedThing external side of cell wall The side of the cell wall that is opposite to the side that faces the cell and its contents. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098790 biolink:NamedThing ncRNA transcription associated with protein coding gene TSS/TES The transcription of non-coding RNA associated with transcriptional start and end sites of protein coding genes. This occurs at some low level for many protein coding genes. tmpzr1t_l9r_go_relaxed.owl pasRNA transcription biological_process owl:Class GO:0000017 biolink:NamedThing alpha-glucoside transport The directed movement of alpha-glucosides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alpha-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in an alpha configuration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060097 biolink:NamedThing cytoskeletal rearrangement involved in phagocytosis, engulfment The assembly, arrangement, or disassembly of cytoskeletal structures that is involved in the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006911 biolink:NamedThing phagocytosis, engulfment The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis. tmpzr1t_l9r_go_relaxed.owl phagosome formation|phagosome biosynthesis biological_process owl:Class GO:0030048 biolink:NamedThing actin filament-based movement Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006654 biolink:NamedThing phosphatidic acid biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. tmpzr1t_l9r_go_relaxed.owl phosphatidic acid formation|phosphatidic acid biosynthesis|phosphatidic acid anabolism|phosphatidic acid synthesis biological_process owl:Class GO:1905224 biolink:NamedThing clathrin-coated pit assembly The aggregation, arrangement and bonding together of a set of components to form a clathrin-coated pit. tmpzr1t_l9r_go_relaxed.owl coated pit assembly|clathrin-coated pit formation|coated pit formation bf 2016-06-07T11:33:28Z biological_process owl:Class GO:0016029 biolink:NamedThing subrhabdomeral cisterna A membrane-bounded compartment that is found at the base of the rhabdomere and contains stored calcium, InsP3 receptors and smooth endoplasmic reticulum Ca2+-ATPase. tmpzr1t_l9r_go_relaxed.owl SMC|submicrovillar cisterna cellular_component owl:Class GO:0009942 biolink:NamedThing longitudinal axis specification The establishment, maintenance and elaboration of the longitudinal axis. In plants, this is the axis that runs from the shoot to the root. tmpzr1t_l9r_go_relaxed.owl longitudinal axis determination|apical-basal pattern specification biological_process owl:Class GO:1902751 biolink:NamedThing positive regulation of cell cycle G2/M phase transition Any signalling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl up regulation of cell cycle G2/M phase transition|up-regulation of cell cycle G2/M phase transition|upregulation of cell cycle G2/M phase transition|activation of cell cycle G2/M phase transition jl 2014-03-05T15:38:27Z biological_process owl:Class GO:0007183 biolink:NamedThing SMAD protein complex assembly The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins. tmpzr1t_l9r_go_relaxed.owl SMAD protein heteromerization biological_process owl:Class GO:0010439 biolink:NamedThing regulation of glucosinolate biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900260 biolink:NamedThing negative regulation of RNA-directed 5'-3' RNA polymerase activity Any process that stops, prevents or reduces the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of ribonucleic synthetase activity|down regulation of PB2 proteins|downregulation of polymerase L|inhibition of PB1 proteins|downregulation of PB1 proteins|down-regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|inhibition of RNA nucleotidyltransferase (RNA-directed) activity|inhibition of 3D polymerase activity|down regulation of ribonucleic synthetase activity|down-regulation of 3D polymerase activity|down regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|negative regulation of RNA nucleotidyltransferase (RNA-directed) activity|down regulation of RNA-dependent RNA replicase activity|negative regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|inhibition of RNA synthetase activity|inhibition of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|downregulation of Q-beta replicase activity|downregulation of ribonucleic synthetase activity|downregulation of ribonucleic acid replicase activity|inhibition of polymerase L|down-regulation of polymerase L|down-regulation of PB1 proteins|down regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|down regulation of phage f2 replicase|downregulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|inhibition of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|inhibition of RNA-dependent RNA replicase activity|down-regulation of RDRP|inhibition of PB2 proteins|inhibition of RDRP|down-regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|down-regulation of ribonucleic replicase activity|negative regulation of 3D polymerase activity|downregulation of 3D polymerase activity|inhibition of RNA-dependent RNA polymerase activity|negative regulation of polymerase L|down regulation of RNA-dependent RNA polymerase activity|negative regulation of RNA-directed RNA polymerase activity|inhibition of Q-beta replicase activity|down-regulation of ribonucleic acid replicase activity|negative regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|down-regulation of RNA-directed RNA polymerase activity|inhibition of transcriptase|negative regulation of RDRP|down regulation of RNA-directed RNA polymerase activity|downregulation of RNA-dependent RNA replicase activity|down-regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|down regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|negative regulation of phage f2 replicase|down regulation of RDRP|downregulation of ribonucleic replicase activity|down regulation of polymerase L|down-regulation of RNA-dependent RNA polymerase activity|inhibition of phage f2 replicase|inhibition of ribonucleic synthetase activity|downregulation of RNA synthetase activity|down regulation of PB1 proteins|down regulation of RNA nucleotidyltransferase (RNA-directed) activity|down-regulation of RNA nucleotidyltransferase (RNA-directed) activity|down regulation of RNA replicase activity|downregulation of phage f2 replicase|inhibition of RNA-dependent ribonucleate nucleotidyltransferase activity|negative regulation of ribonucleic replicase activity|down-regulation of RNA synthetase activity|down-regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|down regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|down-regulation of RNA-dependent RNA replicase activity|downregulation of RNA-dependent RNA polymerase activity|downregulation of RNA-dependent ribonucleate nucleotidyltransferase activity|downregulation of transcriptase|downregulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|down-regulation of PB2 proteins|down-regulation of transcriptase|downregulation of RDRP|downregulation of PB2 proteins|negative regulation of RNA synthetase activity|downregulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|inhibition of RNA replicase activity|down-regulation of Q-beta replicase activity|negative regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|inhibition of RNA-directed RNA polymerase activity|negative regulation of RNA-dependent RNA polymerase activity|negative regulation of PB2 proteins|down regulation of Q-beta replicase activity|inhibition of ribonucleic acid replicase activity|downregulation of RNA replicase activity|negative regulation of Q-beta replicase activity|inhibition of ribonucleic acid-dependent ribonucleic acid polymerase activity|down regulation of ribonucleic replicase activity|negative regulation of transcriptase|down-regulation of RNA replicase activity|negative regulation of RNA-dependent RNA replicase activity|negative regulation of RNA replicase activity|negative regulation of ribonucleic synthetase activity|down regulation of ribonucleic acid replicase activity|downregulation of RNA nucleotidyltransferase (RNA-directed) activity|negative regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|down-regulation of phage f2 replicase|down regulation of 3D polymerase activity|downregulation of RNA-directed RNA polymerase activity|down regulation of RNA synthetase activity|inhibition of ribonucleic replicase activity|negative regulation of ribonucleic acid replicase activity|down regulation of transcriptase|negative regulation of PB1 proteins tb 2012-04-03T11:02:03Z biological_process owl:Class GO:0006826 biolink:NamedThing iron ion transport The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl iron ion import|ferric iron uptake|ferric ion import|iron transport|ferric ion transport|ferrous iron transport|ferrous ion transport|ferric iron transport|ferric iron import pr 2012-04-18T03:33:45Z GO:0033216|GO:0015681|GO:0015682|GO:0097286|GO:0015684 biological_process owl:Class GO:0006415 biolink:NamedThing translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). tmpzr1t_l9r_go_relaxed.owl protein synthesis termination|translational complex disassembly|translation termination GO:0006456|GO:0006443 biological_process owl:Class GO:0030905 biolink:NamedThing retromer, tubulation complex The dimeric subcomplex of the retromer, believed to be peripherally associated with the membrane. This dimeric complex is responsible for remodelling endosomal membranes to form a tube-structure to which cargo molecules are selected for recycling. The budding yeast complex comprises Vps5p and Vps17p, and may contain multiple copies of a Vps5p/Vps17p dimer. The mammalian complex contains SNX1 or SNX2 dimerized with SNX5 or SNX6. tmpzr1t_l9r_go_relaxed.owl retromer complex, outer shell|SNX-BAR dimer|heterodimeric membrane-deforming retromer subcomplex cellular_component owl:Class GO:0021570 biolink:NamedThing rhombomere 4 development The process whose specific outcome is the progression of rhombomere 4 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060978 biolink:NamedThing angiogenesis involved in coronary vascular morphogenesis Blood vessel formation in the heart when new vessels emerge from the proliferation of pre-existing blood vessels. tmpzr1t_l9r_go_relaxed.owl coronary vasculature angiogenesis|coronary blood vessel angiogenesis|angiogenesis involved in heart vascular morphogenesis|angiogenesis involved in cardiac vascular morphogenesis dph 2009-10-06T02:02:12Z biological_process owl:Class GO:0018315 biolink:NamedThing molybdenum incorporation into molybdenum-molybdopterin complex The incorporation of molybdenum into a molybdenum-molybdopterin complex. tmpzr1t_l9r_go_relaxed.owl molybdenum incorporation into metallo-pterin complex GO:0042041 biological_process owl:Class GO:0021910 biolink:NamedThing smoothened signaling pathway involved in ventral spinal cord patterning The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened that results in the spatial identity of regions along the dorsal-ventral axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl hedgehog signaling pathway involved in ventral spinal cord patterning|hh signaling pathway involved in ventral spinal cord patterning|smoothened signalling pathway in ventral spinal cord patterning biological_process owl:Class GO:1903623 biolink:NamedThing negative regulation of RNA polymerase III activity Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase III activity. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter|down-regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter|downregulation of RNA polymerase III activity|down-regulation of RNA polymerase III activity|down regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter|down regulation of RNA polymerase III activity|inhibition of RNA polymerase III activity|negative regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter|inhibition of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter al 2014-11-19T18:24:37Z biological_process owl:Class GO:0042695 biolink:NamedThing thelarche The beginning of development of the breasts in the female. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Thelarche biological_process owl:Class GO:0098565 biolink:NamedThing lumenal side of endosome membrane The side (leaflet) of the endosome membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal leaflet of endosome membrane|internal side of endosome membrane cellular_component owl:Class GO:0002353 biolink:NamedThing plasma kallikrein-kinin cascade A series of reactions that takes place outside the cell occurring in response to tissue damage and initiated within blood plasma by the action of activated Factor XII (Hageman Factor) on prekallikrein to convert it to plasma kallikrein, and the subsequent reaction of plasma kallikrein with high molecular weight kininogen. The ultimate product of the plasma kallikrein-kinin cascade is bradykinin, an agent known to induce smooth muscle contraction, vasoconstriction, and increased vascular permeability. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900316 biolink:NamedThing negative regulation of maltopentaose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltopentaose transport. tmpzr1t_l9r_go_relaxed.owl inhibition of maltopentaose transport|down-regulation of maltopentaose transport|downregulation of maltopentaose transport|down regulation of maltopentaose transport tt 2012-04-05T07:59:56Z biological_process owl:Class GO:2001101 biolink:NamedThing maltopentaose transport The directed movement of a maltopentaoseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:18:36Z biological_process owl:Class GO:0003358 biolink:NamedThing noradrenergic neuron development The process whose specific outcome is the progression of a noradrenergic neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl norepinephrine secreting neuron development dph 2009-12-03T10:38:37Z biological_process owl:Class GO:0019046 biolink:NamedThing release from viral latency The process by which a virus begins to replicate following a latency replication decision (switch). tmpzr1t_l9r_go_relaxed.owl GO:0075717 biological_process owl:Class GO:0019045 biolink:NamedThing latent virus replication Any process required for latent viral replication in a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061341 biolink:NamedThing non-canonical Wnt signaling pathway involved in heart development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via effectors other than beta-catenin and contributing to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl non-canonical Wnt-activated signaling pathway involved in heart development|non-canonical Wnt receptor signaling pathway involved in heart development|non-canonical Wnt receptor signalling pathway involved in heart development dph 2010-09-29T11:27:34Z biological_process owl:Class GO:0030435 biolink:NamedThing sporulation resulting in formation of a cellular spore The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. tmpzr1t_l9r_go_relaxed.owl spore formation|spore biosynthesis|cellular spore formation by sporulation|spore differentiation Wikipedia:Sporogenesis Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo. biological_process owl:Class GO:0060848 biolink:NamedThing endothelial cell fate determination A process involved in cell fate commitment of an endothelial cell. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T11:11:14Z biological_process owl:Class GO:0002364 biolink:NamedThing NK T cell lineage commitment The process in which a pro-T cell becomes committed to becoming an NK T cell. tmpzr1t_l9r_go_relaxed.owl natural killer T lymphocyte lineage commitment|NK T lymphocyte lineage commitment|natural killer T-cell lineage commitment|NK T-cell lineage commitment|NK T-lymphocyte lineage commitment|natural killer T-lymphocyte lineage commitment biological_process owl:Class GO:0010599 biolink:NamedThing production of lsiRNA involved in RNA interference Cleavage of double-stranded RNA to form lsiRNA (long small interfering RNA), a class of siRNAs 30 to 40 nt in length. lsiRNAs are induced by pathogen infection or under specific growth conditions. tmpzr1t_l9r_go_relaxed.owl RNA interference, production of lsiRNA biological_process owl:Class GO:0003144 biolink:NamedThing embryonic heart tube formation The process that gives rise to the embryonic heart tube. This process pertains to the initial formation of a structure from unspecified parts. The embryonic heart tube is an epithelial tube that will give rise to the mature heart. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T04:22:34Z biological_process owl:Class GO:0072247 biolink:NamedThing metanephric glomerular parietal epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular parietal epithelial cell. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. These cells may also give rise to podocytes. tmpzr1t_l9r_go_relaxed.owl metanephric Bowman's capsule cell fate commitment mah 2010-03-19T03:42:27Z biological_process owl:Class GO:0004511 biolink:NamedThing tyrosine 3-monooxygenase activity Catalysis of the reaction: L-tyrosine + tetrahydrobiopterin + O2 = 3,4-dihydroxy-L-phenylalanine + 4-alpha-hydroxytetrahydrobiopterin + H2O. tmpzr1t_l9r_go_relaxed.owl L-tyrosine hydroxylase activity|L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|tyrosine 3-hydroxylase activity|tyrosine hydroxylase activity EC:1.14.16.2|MetaCyc:TYROSINE-3-MONOOXYGENASE-RXN|RHEA:18201|Reactome:R-HSA-209823 molecular_function owl:Class GO:0031204 biolink:NamedThing posttranslational protein targeting to membrane, translocation The process in which a protein translocates through the ER membrane posttranslationally. tmpzr1t_l9r_go_relaxed.owl posttranslational protein membrane targeting, translocation|protein translocation during posttranslational protein targeting to membrane biological_process owl:Class GO:0006620 biolink:NamedThing posttranslational protein targeting to endoplasmic reticulum membrane The targeting of proteins to a membrane that occurs after their translation. Some secretory proteins exhibit posttranslational transport into the endoplasmic reticulum (ER) lumen: they are synthesized in their entirety on free cytosolic ribosomes and then released into the cytosol, where they are bound by chaperones which keep them in an unfolded state, and subsequently are translocated across the ER membrane. tmpzr1t_l9r_go_relaxed.owl posttranslational endoplasmic reticulum protein-membrane targeting|posttranslational protein endoplasmic reticulum membrane targeting|SRP-independent endoplasmic reticulum protein-membrane targeting|posttranslational protein targeting to ER membrane|posttranslational endoplasmic reticulum membrane targeting biological_process owl:Class GO:0004105 biolink:NamedThing choline-phosphate cytidylyltransferase activity Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline. tmpzr1t_l9r_go_relaxed.owl CTP:phosphorylcholine cytidylyltransferase activity|CTP-phosphocholine cytidylyltransferase activity|phosphorylcholine cytidylyltransferase activity|phosphocholine cytidylyltransferase activity|phosphorylcholine:CTP cytidylyltransferase activity|choline phosphate cytidylyltransferase activity|CTP:phosphocholine cytidylyltransferase activity|CDP-choline synthetase activity|phosphorylcholine transferase activity|CTP:choline-phosphate cytidylyltransferase activity|CDP-choline pyrophosphorylase activity|cytidine diphosphocholine pyrophosphorylase activity RHEA:18997|EC:2.7.7.15|MetaCyc:2.7.7.15-RXN|Reactome:R-HSA-1483081 molecular_function owl:Class GO:0044722 biolink:NamedThing renal phosphate excretion The elimination by an organism of phosphate ions in the urine. tmpzr1t_l9r_go_relaxed.owl renal phosphate ion excretion jl 2012-10-18T14:54:00Z biological_process owl:Class GO:0033138 biolink:NamedThing positive regulation of peptidyl-serine phosphorylation Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030041 biolink:NamedThing actin filament polymerization Assembly of actin filaments by the addition of actin monomers to a filament. tmpzr1t_l9r_go_relaxed.owl actin polymerization|actin polymerizing activity biological_process owl:Class GO:0048496 biolink:NamedThing maintenance of animal organ identity The process in which the identity of an animal organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060984 biolink:NamedThing epicardium-derived cardiac vascular smooth muscle cell development The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell that was derived from the epicardium over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T03:07:09Z biological_process owl:Class GO:0097364 biolink:NamedThing stretch-activated, cation-selective, calcium channel activity involved in regulation of action potential Enables the transmembrane transfer of a calcium ion by a channel that opens in response to a mechanical stress in the form of stretching, and contributing to the regulation of action potential. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-25T04:08:33Z molecular_function owl:Class GO:0033254 biolink:NamedThing vacuolar transporter chaperone complex A protein complex that contains four related proteins that have been implicated in several membrane-related processes, such as sorting of H+-translocating ATPases, endocytosis, ER-Golgi trafficking, vacuole fusion, vacuolar polyphosphate homeostasis and the microautophagic scission of vesicles into the vacuolar lumen. The complex is enriched at the vacuolar membrane, but also found in other cellular compartments, including the ER and the cell periphery. In Saccharomyces, the subunits are Vtc1p, Vtc2p, Vtc3p and Vtc4p. tmpzr1t_l9r_go_relaxed.owl VTC complex cellular_component owl:Class GO:0044612 biolink:NamedThing nuclear pore linkers A substructure of the nuclear pore complex (NPC) that serves to connect members of the central transport channel (composed of FG-nucleoporins) to the core scaffold (composed of the inner and outer NPC rings). In S. cerevisiae, the linkers are Nic96p and Nup82p. In vertebrates, they are Nup93 and Nup88. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. Both linkers can be isolated in association with specific FG-nucleoporins, complexes that are sometimes referred to as the Nic96 complex (Nic96p-Nsp1p-Nup49p-Nup57p) and the Nup82 complex (Nup82p-Nup116p-Nup159p-Gle2p). tmpzr1t_l9r_go_relaxed.owl Nic96 complex|Nup82 complex jl 2012-06-20T01:22:40Z cellular_component owl:Class GO:0035710 biolink:NamedThing CD4-positive, alpha-beta T cell activation The change in morphology and behavior of a CD4-positive, alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-02T03:04:11Z biological_process owl:Class GO:2000951 biolink:NamedThing regulation of xyloglucan catabolic process Any process that modulates the frequency, rate or extent of xyloglucan catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of xyloglucan catabolism tt 2011-08-01T02:20:16Z biological_process owl:Class GO:0080143 biolink:NamedThing regulation of amino acid export Any process that modulates the frequency, rate or extent of amino acid export. Amino acid export is the directed movement of amino acids out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl dhl 2010-01-20T04:43:56Z biological_process owl:Class GO:0016483 biolink:NamedThing tryptophan hydroxylase activator activity Increases the activity of the enzyme tryptophase hydroxylase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004510 biolink:NamedThing tryptophan 5-monooxygenase activity Catalysis of the reaction: L-tryptophan + tetrahydrobiopterin + O2 = 5-hydroxy-L-tryptophan + 4-alpha-hydroxytetrahydrobiopterin + H2O. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid-5-hydroxylase activity|L-tryptophan,tetrahydrobiopterin:oxygen oxidoreductase (5-hydroxylating)|L-tryptophan hydroxylase activity|tryptophan hydroxylase activity|tryptophan 5-hydroxylase activity EC:1.14.16.4|RHEA:16709|MetaCyc:TRYPTOPHAN-5-MONOOXYGENASE-RXN|Reactome:R-HSA-209828 molecular_function owl:Class GO:0099058 biolink:NamedThing integral component of postsynaptic endocytic zone membrane The component of the postsynaptic endocytic zone membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034357 biolink:NamedThing photosynthetic membrane A membrane enriched in complexes formed of reaction centers, accessory pigments and electron carriers, in which photosynthetic reactions take place. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990813 biolink:NamedThing meiotic centromeric cohesion protection The process in which the association between sister chromatids of a replicated chromosome centromeric region is maintained during homologous chromosome segregation after cohesin is cleaved by separase along the arm regions. tmpzr1t_l9r_go_relaxed.owl protection of centromeric cohesion during meiotic anaphase I vw 2015-07-28T16:15:31Z biological_process owl:Class GO:0061042 biolink:NamedThing vascular wound healing Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to damaged vasculature. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:18:26Z biological_process owl:Class GO:0035321 biolink:NamedThing maintenance of imaginal disc-derived wing hair orientation Ensuring that hairs in the imaginal disc-derived wing continue to point distally during development, following the initial establishment of wing hair polarity. tmpzr1t_l9r_go_relaxed.owl maintenance of wing hair orientation biological_process owl:Class GO:0035317 biolink:NamedThing imaginal disc-derived wing hair organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of an imaginal disc-derived wing hair. A wing hair is an actin-rich, polarized, non-sensory apical projection that protrudes from each of the approximately 30,000 wing epithelial cells. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl wing hair organization and biogenesis|wing trichome organization and biogenesis|imaginal disc-derived wing hair organization and biogenesis|wing hair organisation See also the fly_anatomy.ontology term 'wing hair ; FBbt:00004340'. biological_process owl:Class GO:1900488 biolink:NamedThing negative regulation of [2Fe-2S] cluster assembly Any process that stops, prevents or reduces the frequency, rate or extent of [2Fe-2S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of 2Fe-2S cluster assembly|down-regulation of [2Fe-2S] cluster assembly|inhibition of [2Fe-2S] cluster biosynthetic process|down-regulation of 2Fe-2S cluster assembly|down regulation of [2Fe-2S] cluster biosynthetic process|down-regulation of [2Fe-2S] cluster biosynthetic process|down regulation of [2Fe-2S] cluster assembly|negative regulation of 2Fe-2S cluster assembly|downregulation of [2Fe-2S] cluster assembly|inhibition of 2Fe-2S cluster assembly|down regulation of 2Fe-2S cluster assembly|negative regulation of [2Fe-2S] cluster biosynthetic process|inhibition of [2Fe-2S] cluster assembly|downregulation of [2Fe-2S] cluster biosynthetic process tt 2012-05-02T01:22:32Z biological_process owl:Class GO:0001306 biolink:NamedThing age-dependent response to oxidative stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007571 biolink:NamedThing age-dependent general metabolic decline A developmental process that arises as the cell progresses toward the end of its lifespan and cause changes cellular metabolism, resulting in a decline in cell function; for example, one aspect of general metabolic decline is a decrease in the efficiency of protein synthesis. tmpzr1t_l9r_go_relaxed.owl nucleolar size increase|age-dependent increased protein content|age-dependent decreased translational activity|age-dependent yeast cell size increase biological_process owl:Class GO:0061700 biolink:NamedThing GATOR2 complex A multiprotein subcomplex of the GATOR complex that regulates TORC1 signaling by interacting with the Rag GTPase. In human, this complex consists of WDR24, WDR59, MIOS, SEH1L, and SEC13. In S. cerevisiae, this complex is referred to as SEACAT and contains the Sea2p, Sea3p, Sea4p, Seh1p, Sec13p proteins. tmpzr1t_l9r_go_relaxed.owl SEACAT complex The Rag GTPase complex corresponds to Gtr1-Gtr2 GTPase complex ; GO:1990131. dph 2015-05-07T11:13:27Z cellular_component owl:Class GO:0035859 biolink:NamedThing Seh1-associated complex A GTPase-activating protein (GAP) complex that regulates TORC1 signaling by interacting with the Rag GTPase. In S. cerevisiae the complex contains Seh1p, Sec13p, Npr2p, Npr3p, Iml1p, Mtc5p, Rtc1p, and Sea4p. tmpzr1t_l9r_go_relaxed.owl GATOR complex|SEA complex https://github.com/geneontology/go-ontology/issues/21778 The Rag GTPase complex corresponds to Gtr1-Gtr2 GTPase complex ; GO:1990131. bf 2011-05-17T10:59:50Z cellular_component owl:Class GO:0072672 biolink:NamedThing neutrophil extravasation The migration of a neutrophil from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-21T03:03:52Z biological_process owl:Class GO:0072639 biolink:NamedThing interleukin-33 production The appearance of interleukin-33 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL33 production|IL-33 production|C9orf26 production|IL1F11 production|interleukin-33 secretion|NF-HEV production|interleukin-33 biosynthetic process GO:0150126|GO:0072640 biological_process owl:Class GO:1990061 biolink:NamedThing bacterial degradosome The degradosome is a protein complex playing a key role in mRNA degradation and RNA processing. It includes a RNA helicase, a 3'-5' phosphate-dependent PNPase and a RNase E bound-enolase. tmpzr1t_l9r_go_relaxed.owl bhm 2013-03-20T13:51:49Z cellular_component owl:Class GO:0072664 biolink:NamedThing maintenance of protein location in peroxisome Any process in which a protein is maintained in a specific location in a peroxisome, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:51:51Z biological_process owl:Class GO:0048237 biolink:NamedThing rough endoplasmic reticulum lumen The volume enclosed by the membranes of the rough endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl rough ER lumen|RER lumen NIF_Subcellular:sao1819509473 cellular_component owl:Class GO:0005791 biolink:NamedThing rough endoplasmic reticulum The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae. tmpzr1t_l9r_go_relaxed.owl RER|rough ER Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum|NIF_Subcellular:sao1881364067 cellular_component owl:Class GO:0001699 biolink:NamedThing acetylcholine-induced gastric acid secretion The regulated release of gastric acid by parietal cells in response to acetylcholine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905145 biolink:NamedThing cellular response to acetylcholine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetylcholine stimulus. tmpzr1t_l9r_go_relaxed.owl dos 2016-04-14T08:54:58Z biological_process owl:Class GO:0008091 biolink:NamedThing spectrin Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao536287099|Wikipedia:Spectrin cellular_component owl:Class GO:0030864 biolink:NamedThing cortical actin cytoskeleton The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0110033 biolink:NamedThing regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway Any process that modulates the frequency, rate or extent of the adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway, the series of molecular signals generated as a consequence of glucose binding to a G protein-coupled receptor, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl regulation of adenylate cyclase-activating glucose-activated G-protein coupled receptor signaling pathway kmv 2017-07-17T20:22:20Z biological_process owl:Class GO:0010619 biolink:NamedThing adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of glucose binding to a G protein-coupled receptor, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl glucose-sensing PKA pathway|activation of adenylate cyclase activity by glucose involved in G-protein signaling|activation of adenylate cyclase activity by glucose-triggered G-protein signalling pathway|activation of adenylate cyclase activity by glucose-triggered G-protein signaling pathway biological_process owl:Class GO:0043584 biolink:NamedThing nose development The process whose specific outcome is the progression of the nose over time, from its formation to the mature structure. The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity). tmpzr1t_l9r_go_relaxed.owl nasus development biological_process owl:Class GO:0002393 biolink:NamedThing lysosomal enzyme production involved in inflammatory response The synthesis or release of lysosomal enzymes following a stimulus as part of a inflammatory response, resulting in an increase in intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl production of lysosomal enzymes involved in inflammatory response|lysosomal enzyme production involved in acute inflammatory response|production of lysosomal enzymes involved in acute inflammatory response biological_process owl:Class GO:0005870 biolink:NamedThing actin capping protein of dynactin complex A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, nucleates the polymerization of actin monomers but does not sever actin filaments, and which is a part of the dynactin complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005869 biolink:NamedThing dynactin complex A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090038 biolink:NamedThing negative regulation of protein kinase C signaling Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein kinase C signaling cascade|negative regulation of protein kinase C signalling cascade tb 2009-08-03T11:29:33Z biological_process owl:Class GO:0070528 biolink:NamedThing protein kinase C signaling A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound. tmpzr1t_l9r_go_relaxed.owl PKC signal transduction|protein kinase C signalling cascade|protein kinase C signal transduction|PKC signaling cascade|protein kinase C signaling cascade biological_process owl:Class GO:0060040 biolink:NamedThing retinal bipolar neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a bipolar cell, the last neuron to be generated in the retina. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900854 biolink:NamedThing positive regulation of terrequinone A biosynthetic process Any process that activates or increases the frequency, rate or extent of terrequinone A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of terrequinone A biosynthetic process|up regulation of terrequinone A biosynthetic process|up-regulation of terrequinone A biosynthetic process di 2012-06-07T09:47:38Z biological_process owl:Class GO:0097401 biolink:NamedThing synaptic vesicle lumen acidification The acidification of the synaptic vesicle lumen via transport of protons into the vesicle. The resulting electrochemical gradient powers neurotransmitter loading. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle proton loading|synaptic vesicle lumen pH reduction pr 2012-10-25T09:03:34Z biological_process owl:Class GO:0019801 biolink:NamedThing cyclization of asparagine involved in intein-mediated protein splicing The cyclization of asparagine to yield an L-aspartimide (otherwise known as alpha-aminosuccinimide) residue at the C-terminus of an excised intein during protein splicing. tmpzr1t_l9r_go_relaxed.owl cyclization of asparagine, during protein splicing RESID:AA0302 See also the biological process term 'intein-mediated protein splicing ; GO:0016539'. biological_process owl:Class GO:0016539 biolink:NamedThing intein-mediated protein splicing The removal of an internal amino acid sequence (an intein) from a protein during protein maturation; the excision of inteins is precise and the N- and C-terminal exteins are joined by a normal peptide bond. Protein splicing involves 4 nucleophilic displacements by the 3 conserved splice junction residues. tmpzr1t_l9r_go_relaxed.owl intein biological_process owl:Class GO:0005319 biolink:NamedThing lipid transporter activity Enables the directed movement of lipids into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl lipophorin|apolipoprotein Reactome:R-HSA-8866329|Reactome:R-HSA-1369028|Reactome:R-HSA-5683672|Reactome:R-HSA-5688397|Reactome:R-HSA-1369052|Reactome:R-HSA-5682285|Reactome:R-HSA-5683714|Reactome:R-HSA-174786|Reactome:R-HSA-6801250|Reactome:R-HSA-8848053|Reactome:R-HSA-5682311 molecular_function owl:Class GO:2000478 biolink:NamedThing positive regulation of metanephric glomerular visceral epithelial cell development Any process that activates or increases the frequency, rate or extent of metanephric glomerular visceral epithelial cell development. tmpzr1t_l9r_go_relaxed.owl positive regulation of metanephric podocyte development yaf 2011-03-09T05:17:26Z biological_process owl:Class GO:0008237 biolink:NamedThing metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl metalloprotease activity|metalloproteinase activity Reactome:R-HSA-5211356|Reactome:R-HSA-2666278|Reactome:R-HSA-5211391|Reactome:R-HSA-157632|Reactome:R-HSA-2022399|Reactome:R-HSA-5211400|Reactome:R-HSA-2022393|Reactome:R-HSA-193679|Reactome:R-HSA-5211387|Reactome:R-HSA-157629|Reactome:R-HSA-2730752|Reactome:R-HSA-2220976|Reactome:R-HSA-5211405|Reactome:R-HSA-5211340|Reactome:R-HSA-9013284|Reactome:R-HSA-9604264|Reactome:R-HSA-2220944|Reactome:R-HSA-2022368|Reactome:R-HSA-9662837|Reactome:R-HSA-3928660|Reactome:R-HSA-8986181|Reactome:R-HSA-2022396 molecular_function owl:Class GO:0061034 biolink:NamedThing olfactory bulb mitral cell layer development The progression of the olfactory bulb mitral cell layer over time from its initial formation until its mature state. The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T03:30:23Z biological_process owl:Class GO:0021772 biolink:NamedThing olfactory bulb development The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099577 biolink:NamedThing regulation of translation at presynapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating translation occurring at the presynapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0030430 biolink:NamedThing host cell cytoplasm The cytoplasm of a host cell. tmpzr1t_l9r_go_relaxed.owl other organism cytoplasm pr 2014-12-01T14:14:21Z GO:0097679 cellular_component owl:Class GO:1902499 biolink:NamedThing positive regulation of protein autoubiquitination Any process that activates or increases the frequency, rate or extent of protein autoubiquitination. tmpzr1t_l9r_go_relaxed.owl upregulation of protein self-ubiquitinylation|activation of protein autoubiquitination|upregulation of protein autoubiquitination|upregulation of protein auto-ubiquitinylation|up-regulation of protein self-ubiquitination|up-regulation of protein self-ubiquitinylation|upregulation of protein auto-ubiquitination|up regulation of protein self-ubiquitination|up-regulation of protein autoubiquitination|up-regulation of protein auto-ubiquitination|activation of protein self-ubiquitinylation|up regulation of protein autoubiquitinylation|up regulation of protein auto-ubiquitinylation|upregulation of protein autoubiquitinylation|upregulation of protein self-ubiquitination|positive regulation of protein auto-ubiquitination|up-regulation of protein autoubiquitinylation|activation of protein autoubiquitinylation|positive regulation of protein self-ubiquitination|up-regulation of protein auto-ubiquitinylation|positive regulation of protein auto-ubiquitinylation|positive regulation of protein self-ubiquitinylation|up regulation of protein self-ubiquitinylation|activation of protein auto-ubiquitinylation|activation of protein auto-ubiquitination|positive regulation of protein autoubiquitinylation|up regulation of protein autoubiquitination|up regulation of protein auto-ubiquitination|activation of protein self-ubiquitination rb 2013-11-13T21:03:37Z biological_process owl:Class GO:0060051 biolink:NamedThing negative regulation of protein glycosylation Any process that stops, prevents, or reduces the frequency, rate or extent of the glycosylation of one or more amino acid residues within a protein. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein amino acid glycosylation biological_process owl:Class GO:0061825 biolink:NamedThing podosome core The F-actin-rich core of an adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell. tmpzr1t_l9r_go_relaxed.owl dph 2017-01-14T14:42:45Z cellular_component owl:Class GO:0002102 biolink:NamedThing podosome An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Podosome Note that podosomes can be distinguished from other F-actin-rich structures or from other matrix contacts. For example, focal adhesions and focal contacts do not display a core structure of F-actin. Unlike focal adhesions, podosome assembly does not require de novo protein synthesis. However, most of the podosome ring components are found in focal adhesions and other cell-matrix contacts. Podosomes are typically found in cells that cross tissue boundaries, recruited to the leading edge of migrating cells, and are often sites of extracellular matrix degradation. cellular_component owl:Class GO:0007147 biolink:NamedThing female meiosis II The cell cycle process in which the second meiotic division occurs in the female germline. tmpzr1t_l9r_go_relaxed.owl female meiosis II nuclear division biological_process owl:Class GO:0032046 biolink:NamedThing micropexophagy-specific membrane apparatus A membrane-bounded flattened sac that is formed during micropexophagy between the membrane tips of an engulfing vacuole, completing the engulfment and sequestration of peroxisomes from the cytosol, and forming a micropexophagic body within the lumen of the vacuole. tmpzr1t_l9r_go_relaxed.owl MIPA|micropexophagic apparatus cellular_component owl:Class GO:1902429 biolink:NamedThing positive regulation of water channel activity Any process that activates or increases the frequency, rate or extent of water channel activity. tmpzr1t_l9r_go_relaxed.owl activation of water channel activity|up regulation of water channel activity|activation of aquaporin|up-regulation of aquaporin|aquaporin activation|up regulation of aquaporin|up-regulation of water channel activity|upregulation of aquaporin|upregulation of water channel activity|positive regulation of aquaporin bf 2013-09-23T12:56:49Z biological_process owl:Class GO:0002468 biolink:NamedThing dendritic cell antigen processing and presentation The process in which a dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904529 biolink:NamedThing regulation of actin filament binding Any process that modulates the frequency, rate or extent of actin filament binding. tmpzr1t_l9r_go_relaxed.owl regulation of actin cross-linking activity|regulation of F-actin binding als 2015-07-30T10:41:49Z biological_process owl:Class GO:0051015 biolink:NamedThing actin filament binding Binding to an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. tmpzr1t_l9r_go_relaxed.owl actin cross-linking activity|F-actin binding molecular_function owl:Class GO:0020032 biolink:NamedThing basal ring of apical complex An electron dense ring at the most posterior position of the apical complex, from which the subpellicular microtubules originate; formed during an invasive life cycle stage of an apicomplexan parasite. tmpzr1t_l9r_go_relaxed.owl posterior polar ring of apical complex|preconoidal ring of apical complex|lower polar ring of apical complex cellular_component owl:Class GO:0098774 biolink:NamedThing curli A proteinaceous extracellular fiber, produced by an enteric bacterium, that is involved in surface and cell-cell contacts that promote community behavior and host colonization. tmpzr1t_l9r_go_relaxed.owl thin aggregative fimbrae|tafi cellular_component owl:Class GO:2000055 biolink:NamedThing positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification Any process that activates or increases the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification. tmpzr1t_l9r_go_relaxed.owl positive regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|positive regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification jl 2010-08-20T01:13:40Z biological_process owl:Class GO:0044332 biolink:NamedThing Wnt signaling pathway involved in dorsal/ventral axis specification The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the establishment, maintenance and elaboration of the dorsal/ventral axis. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt-activated signaling pathway involved in dorsal/ventral axis specification jl 2010-08-20T11:30:30Z biological_process owl:Class GO:1903398 biolink:NamedThing regulation of m7G(5')pppN diphosphatase activity Any process that modulates the frequency, rate or extent of m7G(5')pppN diphosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity|regulation of decapase activity|regulation of m7G(5')pppN pyrophosphatase activity|regulation of M(7)G(5')pppN pyrophosphatase activity mah 2014-09-01T10:16:40Z biological_process owl:Class GO:2000884 biolink:NamedThing glucomannan catabolic process The chemical reactions and pathways resulting in the breakdown of a glucomannan. tmpzr1t_l9r_go_relaxed.owl glucomannan catabolism jl 2011-07-28T09:19:03Z biological_process owl:Class GO:0075009 biolink:NamedThing germ tube formation Development of slender tubular outgrowth first produced by most symbiont spores immediately following germination on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl germ tube formation on or near host biological_process owl:Class GO:0045632 biolink:NamedThing negative regulation of mechanoreceptor differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of mechanoreceptor differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of mechanoreceptor differentiation|inhibition of mechanoreceptor differentiation|down regulation of mechanoreceptor differentiation|downregulation of mechanoreceptor differentiation biological_process owl:Class GO:0042490 biolink:NamedThing mechanoreceptor differentiation The process in which a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001824 biolink:NamedThing blastocyst development The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS5, embryo ; EMAP:23', 'TS5, inner cell mass ; EMAP:24' and 'TS5, trophectoderm; EMAP:28'. biological_process owl:Class GO:0031672 biolink:NamedThing A band The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line. tmpzr1t_l9r_go_relaxed.owl anisotropic disc|A disc|transverse disc|Q disc Wikipedia:Sarcomere#bands cellular_component owl:Class GO:0000918 biolink:NamedThing division septum site selection The process of marking the site where a division septum will form. tmpzr1t_l9r_go_relaxed.owl septin assembly and septum formation|septin assembly and septum biosynthesis|selection of site for barrier cell septum biosynthesis|selection of site for division septum formation|selection of site for barrier cell septum formation|septum positioning biological_process owl:Class GO:0035783 biolink:NamedThing CD4-positive, alpha-beta T cell costimulation The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment CD4-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl CD4-positive, alpha beta T cell costimulation bf 2011-04-04T11:28:52Z biological_process owl:Class GO:0048457 biolink:NamedThing floral whorl morphogenesis The process in which the anatomical structures of the floral whorl are generated and organized. tmpzr1t_l9r_go_relaxed.owl GO:0048414 biological_process owl:Class GO:0004953 biolink:NamedThing icosanoid receptor activity Combining with an icosanoid to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl eicosanoid receptor activity molecular_function owl:Class GO:0050542 biolink:NamedThing icosanoid binding Binding to icosanoids, any C20 polyunsaturated fatty acids or their derivatives, including the leukotrienes and the prostanoids. tmpzr1t_l9r_go_relaxed.owl eicosanoid binding molecular_function owl:Class GO:1902288 biolink:NamedThing regulation of defense response to oomycetes Any process that modulates the frequency, rate or extent of defense response to oomycetes. tmpzr1t_l9r_go_relaxed.owl ms 2013-07-09T13:45:32Z biological_process owl:Class GO:0002229 biolink:NamedThing defense response to oomycetes Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035193 biolink:NamedThing larval central nervous system remodeling Reorganization of the pre-existing, functional larval central nervous system into one that can serve the novel behavioral needs of the adult. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl CNS metamorphosis|central nervous system metamorphosis biological_process owl:Class GO:0002165 biolink:NamedThing instar larval or pupal development The process whose specific outcome is the progression of the instar larva or pupa over time, from its formation to the mature structure. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007470 biolink:NamedThing prothoracic disc morphogenesis The process in which the anatomical structures derived from the prothoracic disc are generated and organized. This includes the transformation of a prothoracic imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into the recognizable adult humerous and anterior spiracle. tmpzr1t_l9r_go_relaxed.owl prothoracic disc metamorphosis biological_process owl:Class GO:0051092 biolink:NamedThing positive regulation of NF-kappaB transcription factor activity Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB. tmpzr1t_l9r_go_relaxed.owl activation of NF-kappaB transcription factor|NF-kappaB activation|activation of NF-kappaB biological_process owl:Class GO:0030877 biolink:NamedThing beta-catenin destruction complex A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome. tmpzr1t_l9r_go_relaxed.owl APC-Axin-1-beta-catenin complex|23S APC complex|Axin-APC-beta-catenin-GSK3B complex|BDC|beta-catenin degradation complex Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. GO:0034747|GO:0034742 cellular_component owl:Class GO:0002776 biolink:NamedThing antimicrobial peptide secretion The regulated release of an antimicrobial peptide from a cell or a tissue. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060561 biolink:NamedThing apoptotic process involved in morphogenesis Any apoptotic process that contributes to the shaping of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl morphogenetic apoptosis|apoptosis involved in morphogenesis|apoptosis involved in development dph 2009-04-28T09:17:27Z biological_process owl:Class GO:0090508 biolink:NamedThing phenylethylamine biosynthetic process involved in synaptic transmission The chemical reactions and pathways resulting in the formation of phenylethylamine that contribute to synaptic transmission. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-15T15:10:23Z biological_process owl:Class GO:0090243 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in somitogenesis The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to somitogenesis. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in somitogenesis tb 2010-01-22T10:46:15Z biological_process owl:Class GO:0097282 biolink:NamedThing immunoglobulin-mediated neutralization The inhibition of an antigen's biological effects by antibody binding to it. An example is neutralization of diphtheria toxin by preventing its entry into human cells via the binding of antibody specific for diphtheria toxin. tmpzr1t_l9r_go_relaxed.owl antibody-mediated neutralization pr 2012-03-26T01:55:24Z biological_process owl:Class GO:0051570 biolink:NamedThing regulation of histone H3-K9 methylation Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900087 biolink:NamedThing positive regulation of G1/S transition of mitotic cell cycle Any signalling pathway that increases or activates a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl up regulation of G1/S transition of mitotic cell cycle|activation of G1/S transition of mitotic cell cycle|upregulation of G1/S transition of mitotic cell cycle|up-regulation of G1/S transition of mitotic cell cycle rph 2012-02-08T12:24:39Z biological_process owl:Class GO:0061026 biolink:NamedThing cardiac muscle tissue regeneration The regrowth of cardiac muscle tissue to repair injured or damaged muscle fibers in the postnatal stage. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T08:25:51Z biological_process owl:Class GO:0006750 biolink:NamedThing glutathione biosynthetic process The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. tmpzr1t_l9r_go_relaxed.owl glutathione anabolism|glutathione biosynthesis|glutathione synthesis|glutathione formation MetaCyc:GLUTATHIONESYN-PWY biological_process owl:Class GO:0030859 biolink:NamedThing polarized epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a polarized epithelial cell. The polarized epithelial cell can be any of the cells within an epithelium where the epithelial sheet is oriented with respect to the planar axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044328 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of endothelial cell migration. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration jl 2010-08-18T04:01:05Z biological_process owl:Class GO:0048318 biolink:NamedThing axial mesoderm development The process whose specific outcome is the progression of the axial mesoderm over time, from its formation to the mature structure. The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021995 biolink:NamedThing neuropore closure The process of joining together the neural folds at either end of the neural tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052633 biolink:NamedThing isocitrate hydro-lyase (cis-aconitate-forming) activity Catalysis of the reaction: cis-aconitate + H2O = isocitrate. tmpzr1t_l9r_go_relaxed.owl cis-aconitase activity|citrate hydro-lyase activity|aconitate hydratase activity|citrate(isocitrate) hydro-lyase activity|citrate(isocitrate) hydro-lyase (cis-aconitate-forming) RHEA:22144|MetaCyc:ACONITATEHYDR-RXN|KEGG_REACTION:R01900 molecular_function owl:Class GO:0034495 biolink:NamedThing protein storage vacuole lumen The volume enclosed by the protein storage vacuole membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030658 biolink:NamedThing transport vesicle membrane The lipid bilayer surrounding a transport vesicle. tmpzr1t_l9r_go_relaxed.owl secretory vesicle membrane|constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0035272 biolink:NamedThing exocrine system development Progression of the exocrine system over time, from its formation to a mature structure. The exocrine system is a system of hormones and glands, where the glands secrete straight to a target site via ducts or tubes. The human exocrine system includes the salivary glands, sweat glands and many glands of the digestive system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900119 biolink:NamedThing positive regulation of execution phase of apoptosis Any process that activates or increases the frequency, rate or extent of execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl upregulation of execution phase of apoptosis|activation of execution phase of apoptosis|up regulation of execution phase of apoptosis|up-regulation of execution phase of apoptosis pr 2012-02-22T11:26:27Z biological_process owl:Class GO:1902733 biolink:NamedThing regulation of growth plate cartilage chondrocyte differentiation Any process that modulates the rate, frequency, or extent of the process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl mr 2014-02-24T16:11:28Z biological_process owl:Class GO:0003418 biolink:NamedThing growth plate cartilage chondrocyte differentiation The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T09:00:56Z biological_process owl:Class GO:1904634 biolink:NamedThing negative regulation of glomerular visceral epithelial cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of glomerular visceral epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of podocyte apoptosis|down-regulation of glomerular visceral epithelial cell apoptosis|down-regulation of glomerular visceral epithelial cell apoptotic process|down regulation of glomerular podocyte apoptosis|inhibition of glomerular podocyte apoptosis|inhibition of glomerular podocyte apoptotic process|negative regulation of glomerular visceral epithelial cell apoptosis|negative regulation of podocyte apoptotic process|down regulation of podocyte apoptotic process|down-regulation of podocyte apoptotic process|inhibition of podocyte apoptotic process|negative regulation of podocyte apoptosis|down-regulation of glomerular podocyte apoptotic process|negative regulation of glomerular podocyte apoptosis|inhibition of glomerular visceral epithelial cell apoptosis|down regulation of glomerular visceral epithelial cell apoptosis|down regulation of glomerular podocyte apoptotic process|downregulation of glomerular podocyte apoptosis|inhibition of podocyte apoptosis|downregulation of glomerular visceral epithelial cell apoptosis|inhibition of glomerular visceral epithelial cell apoptotic process|downregulation of glomerular podocyte apoptotic process|down regulation of podocyte apoptosis|negative regulation of glomerular podocyte apoptotic process|down-regulation of podocyte apoptosis|downregulation of glomerular visceral epithelial cell apoptotic process|down-regulation of glomerular podocyte apoptosis|downregulation of podocyte apoptotic process|down regulation of glomerular visceral epithelial cell apoptotic process sl 2015-08-28T14:14:50Z biological_process owl:Class GO:1903210 biolink:NamedThing glomerular visceral epithelial cell apoptotic process Any apoptotic process in a glomerular visceral epithelial cell. tmpzr1t_l9r_go_relaxed.owl glomerular podocyte apoptosis|podocyte apoptotic process|glomerular visceral epithelial cell apoptosis|podocyte apoptosis|glomerular podocyte apoptotic process sl 2014-07-23T17:07:55Z biological_process owl:Class GO:0044813 biolink:NamedThing glycolytic fermentation via PFOR pathway The glycolytic fermentation beginning with the anaerobic conversion of glucose to pyruvate by the glycolytic pathway, continuing with pyruvate:ferredoxin oxidoreductase (PFOR) activity. This pathway is found in strict anaerobes such as Clostridia species. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-18T16:04:00Z biological_process owl:Class GO:0019164 biolink:NamedThing pyruvate synthase activity Catalysis of the reaction: pyruvate + CoA + 2 oxidized ferredoxin = acetyl-CoA + CO2 + 2 reduced ferredoxin + 2 H+. tmpzr1t_l9r_go_relaxed.owl pyruvate-ferredoxin reductase activity|pyruvate oxidoreductase activity|pyruvate:ferredoxin oxidoreductase activity|pyruvic-ferredoxin oxidoreductase activity|pyruvate synthetase activity|pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)|PFOR KEGG_REACTION:R01196|MetaCyc:PYRUFLAVREDUCT-RXN|EC:1.2.7.1|RHEA:12765 GO:0018696 molecular_function owl:Class GO:0044842 biolink:NamedThing gut granule lumen The lumen of a gut granule, a lysosome-related organelle contained within the intestinal cells of the nematode C. elegans. tmpzr1t_l9r_go_relaxed.owl jl 2014-03-25T12:02:32Z cellular_component owl:Class GO:0072191 biolink:NamedThing ureter smooth muscle development The process whose specific outcome is the progression of smooth muscle in the ureter over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:48:53Z biological_process owl:Class GO:2001131 biolink:NamedThing methane biosynthetic process from dimethyl sulfide The chemical reactions and pathways resulting in the formation of a methane from a dimethyl sulfide. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T10:44:31Z biological_process owl:Class GO:0106122 biolink:NamedThing negative regulation of cobalamin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of a cobalamin metabolic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-01T18:12:48Z biological_process owl:Class GO:0009235 biolink:NamedThing cobalamin metabolic process The chemical reactions and pathways involving cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. tmpzr1t_l9r_go_relaxed.owl vitamin B12 metabolism|cobalamin metabolism|vitamin B12 reduction|vitamin B12 metabolic process biological_process owl:Class GO:1902292 biolink:NamedThing cell cycle DNA replication initiation Any DNA replication initiation that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA re-replication initiation involved in cell cycle DNA replication|DNA-dependent DNA replication initiation involved in cell cycle DNA replication|DNA endoreduplication initiation involved in cell cycle DNA replication|DNA replication initiation involved in cell cycle DNA replication jl 2013-07-09T16:05:54Z biological_process owl:Class GO:0021818 biolink:NamedThing modulation of the microfilament cytoskeleton involved in cell locomotion in cerebral cortex radial glia guided migration The changes in the actin cytoskeleton that are necessary for the movement of cells along radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration. tmpzr1t_l9r_go_relaxed.owl modulation of the microfilament cytoskeleton involved in cell locomotion in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:1903870 biolink:NamedThing positive regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity Any process that activates or increases the frequency, rate or extent of methylenetetrahydrofolate reductase (NAD(P)H) activity. tmpzr1t_l9r_go_relaxed.owl upregulation of 5,10-CH2-H4folate reductase activity|positive regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|upregulation of N5,10-methylenetetrahydrofolate reductase activity|positive regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|up regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|up-regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|activation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|positive regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|upregulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|up regulation of methylenetetrahydrofolate reductase [NAD(P)H]|upregulation of N5,N10-methylenetetrahydrofolate reductase activity|positive regulation of MetF|up-regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|upregulation of methylenetetrahydrofolate reductase [NAD(P)H]|activation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|up-regulation of 5,10-CH2-H4folate reductase activity|activation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|upregulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|up-regulation of MetF|up regulation of N5,10-methylenetetrahydrofolate reductase activity|up regulation of N5,N10-methylenetetrahydrofolate reductase activity|up regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|upregulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|activation of methylenetetrahydrofolate reductase (NADPH2)|up regulation of 5,10-CH(2)-H(4)folate reductase activity|activation of 5,10-CH2-H4folate reductase activity|upregulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|upregulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|activation of MetF|positive regulation of N5,10-methylenetetrahydrofolate reductase activity|positive regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|upregulation of MetF|up-regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|activation of 5,10-methylenetetrahydropteroylglutamate reductase activity|up-regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|activation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|upregulation of methylenetetrahydrofolate reductase (NADPH2)|upregulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|activation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|up regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|positive regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|activation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|up regulation of 5,10-CH2-H4folate reductase activity|up regulation of MetF|activation of 5,10-CH(2)-H(4)folate reductase activity|upregulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|up regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|up-regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|up-regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|up-regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|upregulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|positive regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|activation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|up regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|upregulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|up regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|up regulation of methylenetetrahydrofolate reductase (NADPH2)|positive regulation of 5,10-CH2-H4folate reductase activity|upregulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|up-regulation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|up-regulation of 5,10-CH(2)-H(4)folate reductase activity|up-regulation of 5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|positive regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|up-regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|activation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|upregulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|upregulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|up-regulation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|positive regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|activation of N5,N10-methylenetetrahydrofolate reductase activity|activation of methylenetetrahydrofolate reductase (NAD(P)H) activity|activation of 5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|up regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|up regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|up regulation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|up regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|up-regulation of methylenetetrahydrofolate reductase (NADPH2)|activation of methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|activation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|activation of N5,10-methylenetetrahydrofolate reductase activity|up regulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|upregulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|upregulation of 5,10-CH(2)-H(4)folate reductase activity|activation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|up-regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|positive regulation of 5,10-methylenetetrahydrofolate reductase (FADH) activity|up regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|activation of methylenetetrahydrofolate reductase [NAD(P)H]|positive regulation of methylenetetrahydrofolate reductase (NADPH(2)) activity|upregulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|positive regulation of 5,10-CH(2)-H(4)folate reductase activity|upregulation of 5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|up-regulation of N5,10-methylenetetrahydrofolate reductase activity|activation of methylenetetrahydrofolate reductase (NADPH(2)) activity|positive regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|up-regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|up regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|up-regulation of 5,10-methylenetetrahydrofolate reductase (FADH2) activity|up regulation of 5,10-methylenetetrahydropteroylglutamate reductase activity|activation of methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|positive regulation of methylenetetrahydrofolate reductase (NADPH2)|up-regulation of methylenetetrahydrofolate reductase [NAD(P)H]|positive regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|up-regulation of 5,10-methylenetetrahydrofolate reductase (NADPH) activity|positive regulation of 5-methyltetrahydrofolate:(acceptor) oxidoreductase activity|positive regulation of N5,N10-methylenetetrahydrofolate reductase activity|upregulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity|up-regulation of N5,N10-methylenetetrahydrofolate reductase activity|up regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|up regulation of 5-methyltetrahydrofolate:NAD+ oxidoreductase activity|positive regulation of methylenetetrahydrofolate reductase [NAD(P)H]|positive regulation of 5-methyltetrahydrofolate:NAD oxidoreductase activity|up-regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity|positive regulation of 5-methyltetrahydrofolate:NADP+ oxidoreductase activity rph 2015-02-05T13:26:33Z biological_process owl:Class GO:0004489 biolink:NamedThing methylenetetrahydrofolate reductase (NAD(P)H) activity Catalysis of the reaction: 5-methyltetrahydrofolate + NAD(P)+ = 5,10-methylenetetrahydrofolate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 5,10-methylenetetrahydrofolate reductase (FADH) activity|5-methyltetrahydrofolate:NADP(+) oxidoreductase activity|5-methyltetrahydrofolate:NADP+ oxidoreductase activity|5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity|N(5,10)-methylenetetrahydrofolate reductase activity|methylenetetrahydrofolate reductase (NADPH2)|5,10-methylenetetrahydrofolic acid reductase activity|5-methyltetrahydrofolate:NAD oxidoreductase activity|5-methyltetrahydrofolate:NAD(+) oxidoreductase activity|5,10-methylenetetrahydrofolate reductase (FADH(2)) activity|MetF|methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|5,10-methylenetetrahydropteroylglutamate reductase activity|5,10-methylenetetrahydrofolate reductase (NADPH) activity|N5,10-methylenetetrahydrofolate reductase activity|methylenetetrahydrofolic acid reductase activity|methylenetetrahydrofolate reductase (NADPH(2)) activity|5-methyltetrahydrofolate:NAD+ oxidoreductase activity|MTHFR activity|methylenetetrahydrofolate reductase activity|methylenetetrahydrofolate reductase [NAD(P)H]|methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity|N(5),N(10)-methylenetetrahydrofolate reductase activity|5,10-CH(2)-H(4)folate reductase activity|5,10-CH2-H4folate reductase activity|5,10-methylenetetrahydrofolate reductase activity|5,10-methylenetetrahydrofolate reductase (FADH2) activity|N5,N10-methylenetetrahydrofolate reductase activity|5-methyltetrahydrofolate:(acceptor) oxidoreductase activity KEGG_REACTION:R07168|EC:1.5.1.20|MetaCyc:1.5.1.20-RXN|Reactome:R-HSA-200676|KEGG_REACTION:R01224 GO:0008702 molecular_function owl:Class GO:0048783 biolink:NamedThing positive regulation of cyanophore differentiation Any process that activates or increases the frequency, rate or extent of cyanophore differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of cyanophore differentiation|stimulation of cyanophore differentiation|activation of cyanophore differentiation|upregulation of cyanophore differentiation|up-regulation of cyanophore differentiation biological_process owl:Class GO:0048774 biolink:NamedThing cyanophore differentiation The process in which a relatively unspecialized cell acquires the specialized features of a cyanophore cell. Cyanophores are pigment cells derived from the neural crest. They contain a blue pigment of unknown chemical composition. The pigment is stored in fibrous organelles termed cyanosomes. tmpzr1t_l9r_go_relaxed.owl cyanophore cell differentiation biological_process owl:Class GO:0098591 biolink:NamedThing external side of apical plasma membrane The leaflet the apical region of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface. tmpzr1t_l9r_go_relaxed.owl dos 2014-03-06T12:04:33Z cellular_component owl:Class GO:0000238 biolink:NamedThing zygotene The cell cycle phase which follows leptotene during prophase I of meiosis, and during which each chromosome pairs with its homolog; the two become aligned and crossing over may occur. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Meiosis#Zygotene|Wikipedia:Zygotene Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0007128 biolink:NamedThing meiotic prophase I The cell cycle phase which is the first stage of meiosis I and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0033148 biolink:NamedThing positive regulation of intracellular estrogen receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of estrogen receptor signaling pathway|positive regulation of estrogen receptor signalling pathway biological_process owl:Class GO:0060965 biolink:NamedThing negative regulation of gene silencing by miRNA Any process that decreases the rate, frequency, or extent of gene silencing by miRNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of gene silencing by microRNA dph 2009-10-05T03:14:14Z biological_process owl:Class GO:0048927 biolink:NamedThing posterior lateral line neuromast support cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048919 biolink:NamedThing posterior lateral line neuromast development The process whose specific outcome is the progression of the posterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097103 biolink:NamedThing endothelial stalk cell fate specification The process involved in the specification of identity of an endothelial stalk cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. An endothelial stalk cell is a specialized endothelial cell which follows behind the tip cell of an angiogenic sprout. tmpzr1t_l9r_go_relaxed.owl angiogenic stalk cell fate specification pr 2011-07-27T10:32:38Z biological_process owl:Class GO:0014831 biolink:NamedThing gastro-intestinal system smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the gastro-intestinal system. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The gastro-intestinal system generally refers to the digestive structures stretching from the mouth to anus, but does not include the accessory glandular organs (liver, pancreas and biliary tract). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060008 biolink:NamedThing Sertoli cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Sertoli cell. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000995 biolink:NamedThing RNA polymerase III general transcription initiation factor activity A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase III. Factors required for RNA polymerase III transcription initiation include TFIIIA, TFIIIB and TFIIIC. A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase III. Factors required for RNA polymerase III transcription initiation include TFIIIA, TFIIIB and TFIIIC. RNA polymerase III transcribes genes encoding short RNAs, including tRNAs, 5S rRNA, U6 snRNA, the short ncRNA component of RNases P, the mitochondrial RNA processing (MRP) RNA, the signal recognition particle SRP RNA, and in higher eukaryotes a number of micro and other small RNAs, though there is some variability across species as to whether a given small noncoding RNA is transcribed by RNA polymerase II or RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl transcription factor activity, core RNA polymerase III binding|RNA polymerase III general initiation factor activity|RNA polymerase III transcription factor activity, sequence-specific DNA binding|core RNA polymerase III binding transcription factor activity|sequence-specific DNA binding RNA polymerase III transcription factor activity https://github.com/geneontology/go-ontology/issues/15789|https://github.com/geneontology/go-ontology/issues/20253 krc 2010-08-23T03:41:48Z GO:0001034 molecular_function owl:Class GO:0060774 biolink:NamedThing auxin mediated signaling pathway involved in phyllotactic patterning The series of molecular signals generated in response to detection of auxin that contributes to the radial pattern formation process resulting in the formation of leaf or flower primordia around the center of a shoot apical meristem. tmpzr1t_l9r_go_relaxed.owl auxin mediated signalling pathway involved in phyllotactic patterning dph 2009-07-25T06:31:13Z biological_process owl:Class GO:0060389 biolink:NamedThing pathway-restricted SMAD protein phosphorylation The process of introducing a phosphate group on to a pathway restricted SMAD protein. A pathway restricted SMAD protein is an effector protein that acts directly downstream of the transforming growth factor family receptor. tmpzr1t_l9r_go_relaxed.owl receptor regulated SMAD protein phosphorylation|receptor-regulated SMAD protein phosphorylation|R-SMAD protein phosphorylation|pathway restricted SMAD protein phosphorylation biological_process owl:Class GO:0032254 biolink:NamedThing establishment of secretory granule localization The directed movement of a secretory granule to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of secretory granule localisation biological_process owl:Class GO:0072253 biolink:NamedThing metanephric juxtaglomerulus cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric juxtaglomerulus cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:55:47Z biological_process owl:Class GO:1900256 biolink:NamedThing regulation of beta1-adrenergic receptor activity Any process that modulates the frequency, rate or extent of beta1-adrenergic receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of beta1 adrenoceptor tb 2012-04-03T10:59:21Z biological_process owl:Class GO:0019813 biolink:NamedThing type III site-specific deoxyribonuclease complex A heterodimeric enzyme complex composed of two subunits, Res and Mod, that functions as an endonuclease and cleaves DNA. Cleavage will only occur when there are two un-methylated copies of a specific recognition site in an inverse orientation on the DNA. Cleavage occurs at a specific distance away from one of the recognition sites. The Mod subunit can act alone as a methyltansferase. DNA restriction systems such as this are used by bacteria to defend against phage and other foreign DNA that may enter a cell. tmpzr1t_l9r_go_relaxed.owl type III restriction enzyme complex cellular_component owl:Class GO:0060918 biolink:NamedThing auxin transport The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-28T02:44:54Z biological_process owl:Class GO:0006369 biolink:NamedThing termination of RNA polymerase II transcription The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed. tmpzr1t_l9r_go_relaxed.owl RNA 3'-end formation by RNA polymerase II|RNA polymerase II transcription termination|RNA polymerase II transcription termination factor activity|transcription termination from RNA polymerase II promoter|transcription termination from Pol II promoter GO:0019224 biological_process owl:Class GO:0016459 biolink:NamedThing myosin complex A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000880 biolink:NamedThing positive regulation of dipeptide transport Any process that activates or increases the frequency, rate or extent of dipeptide transport. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-27T02:55:24Z biological_process owl:Class GO:0042938 biolink:NamedThing dipeptide transport The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090182 biolink:NamedThing regulation of secretion of lysosomal enzymes Any process that modulates the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T10:40:46Z biological_process owl:Class GO:0000324 biolink:NamedThing fungal-type vacuole A vacuole that has both lytic and storage functions. The fungal vacuole is a large, membrane-bounded organelle that functions as a reservoir for the storage of small molecules (including polyphosphate, amino acids, several divalent cations (e.g. calcium), other ions, and other small molecules) as well as being the primary compartment for degradation. It is an acidic compartment, containing an ensemble of acid hydrolases. At least in S. cerevisiae, there are indications that the morphology of the vacuole is variable and correlated with the cell cycle, with logarithmically growing cells having a multilobed, reticulated vacuole, while stationary phase cells contain a single large structure. tmpzr1t_l9r_go_relaxed.owl vacuole, cell cycle-correlated morphology cellular_component owl:Class GO:0090051 biolink:NamedThing negative regulation of cell migration involved in sprouting angiogenesis Any process that decreases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-07T10:42:00Z biological_process owl:Class GO:0140664 biolink:NamedThing ATP-dependent DNA damage sensor activity A molecule that recognises toxic DNA structures, and initiates a signalling response, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21662 pg 2021-06-19T16:37:21Z molecular_function owl:Class GO:0016887 biolink:NamedThing ATP hydrolysis activity Catalysis of the reaction: ATP + H2O = ADP + H+ Pi. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. tmpzr1t_l9r_go_relaxed.owl ATP hydrolase activity|ATP phosphohydrolase activity|ATP monophosphatase activity|adenosinetriphosphatase activity|adenosine 5'-triphosphatase activity|adenosine triphosphatase activity https://github.com/geneontology/go-ontology/issues/21612|https://github.com/geneontology/go-ontology/issues/20498|https://github.com/geneontology/go-ontology/issues/22371|https://github.com/geneontology/go-ontology/issues/19078 Reactome:R-HSA-5618093|Reactome:R-HSA-8939203|Reactome:R-HSA-9038161|Reactome:R-HSA-8868658|Reactome:R-HSA-5694425|Reactome:R-HSA-9706399|Reactome:R-HSA-416985|Reactome:R-HSA-72139|Reactome:R-HSA-917693|Reactome:R-HSA-6814678|Reactome:R-HSA-9668415|Reactome:R-HSA-6809015|Reactome:R-HSA-159101|Reactome:R-HSA-6814670|Reactome:R-HSA-3371422|Reactome:R-HSA-8847638|Reactome:R-HSA-9609860|Reactome:R-HSA-6811422|RHEA:13065|Reactome:R-HSA-5654989|Reactome:R-HSA-6814683 Note that this term is meant to specifically represent the ATPase activity of proteins using ATPase as a source of energy to drive a reaction. If possible, gene products should also be annotated to a child of 'ATP-dependent activity ; GO:0140657', to capture their overall function. GO:0004002|GO:0042623 molecular_function owl:Class GO:0032587 biolink:NamedThing ruffle membrane The portion of the plasma membrane surrounding a ruffle. tmpzr1t_l9r_go_relaxed.owl membrane ruffle cellular_component owl:Class GO:0014817 biolink:NamedThing skeletal muscle satellite cell fate specification The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014813 biolink:NamedThing skeletal muscle satellite cell commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a satellite cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034141 biolink:NamedThing positive regulation of toll-like receptor 3 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR3 signaling pathway|positive regulation of toll-like receptor 3 signalling pathway biological_process owl:Class GO:0030672 biolink:NamedThing synaptic vesicle membrane The lipid bilayer surrounding a synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905338 biolink:NamedThing negative regulation of cohesin unloading Any process that stops, prevents or reduces the frequency, rate or extent of cohesin unloading. tmpzr1t_l9r_go_relaxed.owl downregulation of cohesin unloading|inhibition of cohesin unloading|down-regulation of cohesin unloading|down regulation of cohesin unloading vw 2016-07-26T16:23:58Z biological_process owl:Class GO:0070316 biolink:NamedThing regulation of G0 to G1 transition A cell cycle process that modulates the rate or extent of the transition from the G0 quiescent state to the G1 phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045023 biolink:NamedThing G0 to G1 transition The mitotic cell cycle phase transition whose occurrence commits the cell from the G0 quiescent state to the G1 phase. Under certain conditions, cells exit the cell cycle during G1 and remain in the G0 state as nongrowing, non-dividing (quiescent) cells. Appropriate stimulation of such cells induces them to return to G1 and resume growth and division. The G0 to G1 transition is accompanied by many changes in the program of gene expression. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071808 biolink:NamedThing satellite fibril An axoneme part that is found in the flagella of mammalian sperm and is located in the middle piece between the outer dense fibers (on the concave side of outer dense fibers as seen in cross-section). tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T03:42:14Z cellular_component owl:Class GO:0046660 biolink:NamedThing female sex differentiation The establishment of the sex of a female organism by physical differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005822 biolink:NamedThing inner plaque of spindle pole body One of three laminate structures that form the spindle pole body; the inner plaque is in the nucleus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071584 biolink:NamedThing negative regulation of zinc ion transmembrane import Any process that stops, prevents, or reduces the frequency, rate or extent of zinc ion import. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T03:17:21Z biological_process owl:Class GO:0001646 biolink:NamedThing cAMP receptor activity Combining with cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl 3',5'-cAMP receptor activity|class E G-protein coupled receptor|class E G protein coupled receptor|adenosine 3',5'-cyclophosphate receptor activity|3',5' cAMP receptor activity|class E GPCR|cyclic AMP receptor activity GO:0001644 molecular_function owl:Class GO:1905272 biolink:NamedThing negative regulation of proton-transporting ATP synthase activity, rotational mechanism Any process that stops, prevents or reduces the frequency, rate or extent of proton-transporting ATP synthase activity, rotational mechanism. tmpzr1t_l9r_go_relaxed.owl down regulation of H+-transporting ATP synthase activity|down-regulation of hydrogen ion transporting two-sector ATPase activity|inhibition of H+-transporting ATP synthase activity|down-regulation of H+-transporting ATP synthase activity|inhibition of proton-transporting ATP synthase activity, rotational mechanism|down-regulation of hydrogen ion translocating F-type ATPase activity|down-regulation of proton-transporting ATP synthase activity, rotational mechanism|down regulation of proton-transporting ATP synthase activity, rotational mechanism|negative regulation of hydrogen ion translocating F-type ATPase activity|inhibition of hydrogen ion transporting ATP synthase activity, rotational mechanism|downregulation of hydrogen ion translocating F-type ATPase activity|down regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|down regulation of hydrogen ion translocating F-type ATPase activity|downregulation of proton-transporting ATP synthase activity, rotational mechanism|downregulation of H+-transporting ATP synthase activity|downregulation of hydrogen ion transporting two-sector ATPase activity|negative regulation of H+-transporting ATP synthase activity|negative regulation of hydrogen ion transporting two-sector ATPase activity|inhibition of hydrogen ion transporting two-sector ATPase activity|downregulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|down-regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism|inhibition of hydrogen ion translocating F-type ATPase activity|down regulation of hydrogen ion transporting two-sector ATPase activity|negative regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism als 2016-06-16T12:09:57Z biological_process owl:Class GO:0042052 biolink:NamedThing rhabdomere development The assembly and arrangement of a rhabdomere within a cell. The rhabdomere is the organelle on the apical surface of a photoreceptor cell that contains the visual pigments. tmpzr1t_l9r_go_relaxed.owl rhabdomere organization biological_process owl:Class GO:0060038 biolink:NamedThing cardiac muscle cell proliferation The expansion of a cardiac muscle cell population by cell division. tmpzr1t_l9r_go_relaxed.owl cardiac myocyte proliferation|cardiomyocyte proliferation|heart muscle cell proliferation biological_process owl:Class GO:0035144 biolink:NamedThing anal fin morphogenesis The process in which the anatomical structures of the anal fin are generated and organized. An anal fin is an unpaired medial fin on the ventral aspect near the caudal end of a fish, which provides lateral stability while swimming. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016575 biolink:NamedThing histone deacetylation The modification of histones by removal of acetyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904241 biolink:NamedThing positive regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly Any process that activates or increases the frequency, rate or extent of VCP-NPL4-UFD1 AAA ATPase complex assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|positive regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|activation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|upregulation of VCP-NPL4-UFD1 AAA ATPase complex formation|activation of p97-Ufd1-Npl4 complex assembly|up regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|positive regulation of p97-Ufd1-Npl4 complex formation|upregulation of p97-Ufd1-Npl4 complex assembly|upregulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|activation of VCP-NPL4-UFD1 AAA ATPase complex formation|up-regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|up regulation of p97-Ufd1-Npl4 complex formation|up regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|up regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|upregulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|positive regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|up regulation of p97-Ufd1-Npl4 complex assembly|positive regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|up-regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|up-regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly|upregulation of p97-Ufd1-Npl4 complex formation|activation of VCP-NPL4-UFD1 AAA ATPase complex assembly|up-regulation of p97-Ufd1-Npl4 complex formation|positive regulation of p97-Ufd1-Npl4 complex assembly|up-regulation of p97-Ufd1-Npl4 complex assembly|upregulation of VCP-NPL4-UFD1 AAA ATPase complex assembly|activation of p97-Ufd1-Npl4 complex formation|activation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation|up regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly bf 2015-05-18T09:50:34Z biological_process owl:Class GO:0060937 biolink:NamedThing cardiac fibroblast cell fate commitment The commitment of cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:24:59Z biological_process owl:Class GO:1903548 biolink:NamedThing negative regulation of growth hormone activity Any process that stops, prevents or reduces the frequency, rate or extent of growth hormone activity. tmpzr1t_l9r_go_relaxed.owl downregulation of growth hormone activity|downregulation of GH activity|down-regulation of growth hormone activity|down regulation of growth hormone activity|down-regulation of pituitary growth hormone activity|down-regulation of placental growth hormone activity|inhibition of placental growth hormone activity|negative regulation of GH activity|inhibition of pituitary growth hormone activity|inhibition of growth hormone activity|down regulation of GH activity|down regulation of pituitary growth hormone activity|inhibition of GH activity|down regulation of placental growth hormone activity|downregulation of pituitary growth hormone activity|down-regulation of GH activity|negative regulation of placental growth hormone activity|downregulation of placental growth hormone activity|negative regulation of pituitary growth hormone activity mr 2014-10-20T15:18:45Z biological_process owl:Class GO:0070186 biolink:NamedThing growth hormone activity The action characteristic of growth hormone, a peptide hormone that is secreted by the anterior pituitary or the placenta into the circulation, and binds to membrane receptors in target tissues to stimulate body growth. tmpzr1t_l9r_go_relaxed.owl pituitary growth hormone activity|GH activity|placental growth hormone activity molecular_function owl:Class GO:0005242 biolink:NamedThing inward rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by an inwardly-rectifying voltage-gated channel. An inwardly rectifying current-voltage relation is one where at any given driving force the inward flow of K+ ions exceeds the outward flow for the opposite driving force. The inward-rectification is due to a voltage-dependent block of the channel pore by a specific ligand or ligands, and as a result the macroscopic conductance depends on the difference between membrane voltage and the K+ equilibrium potential rather than on membrane voltage itself. tmpzr1t_l9r_go_relaxed.owl Kir channel activity Reactome:R-HSA-1296045|Reactome:R-HSA-1369017|Reactome:R-HSA-5678418|Reactome:R-HSA-1296046|Reactome:R-HSA-5678261 molecular_function owl:Class GO:0009688 biolink:NamedThing abscisic acid biosynthetic process The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. tmpzr1t_l9r_go_relaxed.owl abscisic acid anabolism|abscisic acid formation|abscisic acid synthesis|abscisic acid biosynthesis MetaCyc:PWY-695 biological_process owl:Class GO:1904132 biolink:NamedThing positive regulation of convergent extension involved in neural plate elongation Any process that activates or increases the frequency, rate or extent of convergent extension involved in neural plate elongation. tmpzr1t_l9r_go_relaxed.owl up regulation of convergent extension involved in neural plate elongation|up-regulation of convergent extension involved in neural plate elongation|activation of convergent extension involved in neural plate elongation|upregulation of convergent extension involved in neural plate elongation dph 2015-04-10T21:13:33Z biological_process owl:Class GO:0022007 biolink:NamedThing convergent extension involved in neural plate elongation The process of directed cell movement in the neural plate resulting in tissue elongation via intercalation of adjacent cells in an epithelial sheet at the midline, leading to narrowing and lengthening of the neural plate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021618 biolink:NamedThing hypoglossal nerve morphogenesis The process in which the anatomical structure of the hypoglossal nerve is generated and organized. This motor nerve innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. tmpzr1t_l9r_go_relaxed.owl CN XII morphogenesis biological_process owl:Class GO:0021566 biolink:NamedThing hypoglossal nerve development The process whose specific outcome is the progression of the hypoglossal nerve over time, from its formation to the mature structure. This motor nerve innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. tmpzr1t_l9r_go_relaxed.owl cranial nerve XII development|cranial nerve 12 development|CN XII development biological_process owl:Class GO:2000141 biolink:NamedThing positive regulation of octopamine signaling pathway involved in response to food Any process that activates or increases the frequency, rate or extent of octopamine signaling pathway involved in response to food. tmpzr1t_l9r_go_relaxed.owl positive regulation of octopamine signalling pathway involved in response to food mah 2010-09-30T02:48:12Z biological_process owl:Class GO:0010084 biolink:NamedThing specification of animal organ axis polarity The process in which the polarity of an animal organ axis is specified. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902512 biolink:NamedThing positive regulation of apoptotic DNA fragmentation Any process that activates or increases the frequency, rate or extent of apoptotic DNA fragmentation. tmpzr1t_l9r_go_relaxed.owl up-regulation of endonucleolytic DNA catabolic process involved in apoptosis|upregulation of endonucleolytic DNA catabolic process involved in apoptosis|upregulation of DNA catabolism during apoptosis|up regulation of apoptotic DNA fragmentation|up-regulation of DNA catabolic process during apoptosis|upregulation of DNA catabolic process during apoptosis|positive regulation of DNA fragmentation involved in apoptotic nuclear change|positive regulation of DNA catabolic process during apoptosis|up regulation of endonucleolytic DNA catabolic process involved in apoptosis|activation of endonucleolytic DNA catabolic process involved in apoptosis|upregulation of apoptotic DNA fragmentation|activation of DNA catabolism during apoptosis|up-regulation of DNA catabolism during apoptosis|activation of DNA catabolic process during apoptosis|up regulation of DNA catabolism during apoptosis|upregulation of DNA fragmentation involved in apoptotic nuclear change|up-regulation of apoptotic DNA fragmentation|up regulation of DNA catabolic process during apoptosis|up regulation of DNA fragmentation involved in apoptotic nuclear change|up-regulation of DNA fragmentation involved in apoptotic nuclear change|activation of DNA fragmentation involved in apoptotic nuclear change|positive regulation of DNA catabolism during apoptosis|activation of apoptotic DNA fragmentation|positive regulation of endonucleolytic DNA catabolic process involved in apoptosis hjd 2013-11-15T18:28:50Z biological_process owl:Class GO:0006309 biolink:NamedThing apoptotic DNA fragmentation The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments. tmpzr1t_l9r_go_relaxed.owl endonucleolytic DNA catabolic process involved in apoptosis|DNA catabolism during apoptosis|chromatinolysis|DNA fragmentation involved in apoptotic nuclear change|DNA fragmentation|DNA catabolic process during apoptosis DNA fragmentation in response to apoptotic signals is achieved through the activity of apoptotic nucleases. In human, these include DNA fragmentation factor (DFF) or caspase-activated DNase (CAD) and endonuclease G (Endo G) (reviewed in PMID:15723341). Caution is needed when apoptotic DNA laddering assays show presence of fragmented DNA. A positive assay may simply reflect the end point of a whole apoptotic process. Unless clear experimental evidence is available to show that a gene product is directly involved in fragmenting DNA, please do not annotate to GO:0006309 'apoptotic DNA fragmentation' and consider annotating instead to a more upstream process such as, e.g., GO:0042981 'regulation of apoptotic process', GO:0006915 'apoptotic process', GO:0097190 'apoptotic signaling pathway'. Also, note that gene products involved in compartmentalization of apoptotic nucleases and in activation or repression of their enzymatic activity should be annotated to the regulation term GO:1902510 'regulation of apoptotic DNA fragmentation' or to one of its children (see PMID:15723341). GO:0008178 biological_process owl:Class GO:0031674 biolink:NamedThing I band A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end. tmpzr1t_l9r_go_relaxed.owl I disc|isotropic disc|J disc Wikipedia:Sarcomere#bands cellular_component owl:Class GO:0030017 biolink:NamedThing sarcomere The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sarcomere cellular_component owl:Class GO:0005902 biolink:NamedThing microvillus Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells. tmpzr1t_l9r_go_relaxed.owl microvilli Wikipedia:Microvillus|NIF_Subcellular:sao671419673 Note that this term refers to a projection from a single cell, and should not be confused with 'microvillus' as used to refer to a multicellular structure such as that found in the placenta. cellular_component owl:Class GO:0099243 biolink:NamedThing extrinsic component of synaptic membrane The component of the synaptic membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl dos 2017-05-25T17:24:23Z cellular_component owl:Class GO:1903853 biolink:NamedThing regulation of stress response to copper ion Any process that modulates the frequency, rate or extent of stress response to copper ion. tmpzr1t_l9r_go_relaxed.owl regulation of stress response to copper|regulation of response to copper toxicity|regulation of response to copper ion stress kmv 2015-01-29T20:15:23Z biological_process owl:Class GO:0003253 biolink:NamedThing cardiac neural crest cell migration involved in outflow tract morphogenesis The orderly movement of a neural crest cell from one site to another that will contribute to the morphogenesis of the outflow tract. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T02:14:16Z biological_process owl:Class GO:0051838 biolink:NamedThing cytolysis by host of symbiont cells The killing by an organism of a cell in its symbiont organism by means of the rupture of cell membranes and the loss of cytoplasm. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052337 biolink:NamedThing modification by host of symbiont membrane The process in which an organism effects a change in the structure or function of a symbiont cellular membrane. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by host of symbiont cell membrane biological_process owl:Class GO:0008228 biolink:NamedThing opsonization The process in which a microorganism (or other particulate material) is rendered more susceptible to phagocytosis by coating with an opsonin, a blood serum protein such as a complement component or antibody. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Opsonin biological_process owl:Class GO:0045291 biolink:NamedThing mRNA trans splicing, SL addition The joining together of two independently transcribed RNAs, where the one that provides the 5' portion of the final mRNA is from a splice leader RNA (SL-RNA). The SL-RNA, or mini-exon donor sequence, is added to the 5'-end of the acceptor RNA molecule which provides the mRNA body. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA trans splicing, spliced leader addition|nuclear mRNA trans splicing, SL addition biological_process owl:Class GO:0070304 biolink:NamedThing positive regulation of stress-activated protein kinase signaling cascade Any process that activates or increases the frequency, rate or extent of signaling via the stress-activated protein kinase signaling cascade. tmpzr1t_l9r_go_relaxed.owl up-regulation of stress-activated protein kinase signaling pathway|activation of stress-activated protein kinase signaling pathway|up regulation of stress-activated protein kinase signaling pathway|positive regulation of SAPK signaling pathway|stimulation of stress-activated protein kinase signaling pathway|positive regulation of stress-activated protein kinase signalling pathway|upregulation of stress-activated protein kinase signaling pathway|positive regulation of stress-activated protein kinase signaling pathway biological_process owl:Class GO:0045263 biolink:NamedThing proton-transporting ATP synthase complex, coupling factor F(o) All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, F0 sector|hydrogen-transporting ATP synthase, coupling factor CF(0)|hydrogen-transporting ATP synthase complex, coupling factor F(o)|proton-transporting ATP synthase complex, coupling factor F(0) cellular_component owl:Class GO:2001091 biolink:NamedThing nigerotriose transport The directed movement of a nigerotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T01:51:49Z biological_process owl:Class GO:0071560 biolink:NamedThing cellular response to transforming growth factor beta stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to TGFbeta stimulus|cellular response to TGF-beta stimulus mah 2010-01-20T11:51:18Z biological_process owl:Class GO:0018991 biolink:NamedThing oviposition The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water. tmpzr1t_l9r_go_relaxed.owl post-mating oviposition|egg laying|egg-laying Wikipedia:Oviposition GO:0060403 biological_process owl:Class GO:1905255 biolink:NamedThing regulation of RNA binding transcription factor activity Any process that modulates the frequency, rate or extent of RNA binding transcription factor activity. tmpzr1t_l9r_go_relaxed.owl regulation of transcription factor activity bf 2016-06-13T11:29:11Z biological_process owl:Class GO:0060634 biolink:NamedThing regulation of 4,6-pyruvylated galactose residue biosynthetic process Any process that modulates the rate, frequency, or extent of 4,6-pyruvylated galactose residue biosynthetic process, the chemical reactions and pathways resulting in the formation of the pyruvylated galactose residue 4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-(1->3)-. The galactose residue is part of a larger polysaccharide chain. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T03:15:39Z biological_process owl:Class GO:0051072 biolink:NamedThing 4,6-pyruvylated galactose residue biosynthetic process The chemical reactions and pathways resulting in the formation of the pyruvylated galactose residue 4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3-. The galactose residue is part of a larger polysaccharide chain. tmpzr1t_l9r_go_relaxed.owl PvGal biosynthesis|4,6-pyruvylated galactose residue formation|4,6-pyruvylated galactose residue synthesis|4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 biosynthesis|4,6-pyruvylated galactose residue biosynthesis|PvGal biosynthetic process|4,6-pyruvylated galactose residue anabolism|4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 biosynthetic process biological_process owl:Class GO:0017087 biolink:NamedThing mitochondrial processing peptidase complex A protein complex consisting of a regulatory subunit (alpha-MPP) and a catalytic subunit (beta-MPP) that catalyzes the release of N-terminal targeting peptides from precursor proteins imported into the mitochondrion. tmpzr1t_l9r_go_relaxed.owl Note that monomeric mitochondrial processing peptidases have been observed. cellular_component owl:Class GO:0038099 biolink:NamedThing nodal receptor complex assembly The aggregation, arrangement and bonding together of a set of components to form a complex containing a type II activin receptor, a type I activin receptor, and a coreceptor of the EGF-CFC family (e.g. Cripto or Cryptic, in mammals). tmpzr1t_l9r_go_relaxed.owl nodal receptor complex formation|ActRIIB.ALK4.EGF-CFC complex formation bf 2012-02-17T11:16:40Z biological_process owl:Class GO:0048442 biolink:NamedThing sepal development The process whose specific outcome is the progression of the sepal over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl GO:0048421 biological_process owl:Class GO:1904046 biolink:NamedThing negative regulation of vascular endothelial growth factor production Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor production. tmpzr1t_l9r_go_relaxed.owl down regulation of vascular endothelial growth factor production|down-regulation of vascular endothelial growth factor production|inhibition of VEGF production|downregulation of VEGF production|inhibition of vascular endothelial growth factor production|down-regulation of VEGF production|downregulation of vascular endothelial growth factor production|negative regulation of VEGF production|down regulation of VEGF production sl 2015-03-16T23:27:06Z biological_process owl:Class GO:0010573 biolink:NamedThing vascular endothelial growth factor production The appearance of vascular endothelial growth factor production due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl VEGF production biological_process owl:Class GO:1900541 biolink:NamedThing fumonisin biosynthetic process The chemical reactions and pathways resulting in the formation of fumonisin. tmpzr1t_l9r_go_relaxed.owl fumonisin biosynthesis|fumonisin anabolism|fumonisin formation|fumonisin synthesis tb 2012-05-11T12:54:37Z biological_process owl:Class GO:0002549 biolink:NamedThing negative regulation of plasma kallikrein-kinin cascade Any process that stops, prevents, or reduces the frequency, rate, or extent of the plasma kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl down regulation of plasma kallikrein-kinin cascade|down-regulation of plasma kallikrein-kinin cascade|inhibition of plasma kallikrein-kinin cascade|downregulation of plasma kallikrein-kinin cascade biological_process owl:Class GO:0001544 biolink:NamedThing initiation of primordial ovarian follicle growth Increase in size of primordial follicles including proliferation and shape changes of granulosa and/or theca cells until oocyte is surrounded by one layer of cuboidal shaped granulosa cells (primary follicle). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035817 biolink:NamedThing renal sodium ion absorption involved in negative regulation of renal sodium excretion Any process where sodium ions are taken up from the collecting ducts and proximal and distal loops of the nephron, which contributes to decreasing the amount of sodium that is excreted in urine per unit time. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-20T01:40:11Z biological_process owl:Class GO:1904255 biolink:NamedThing negative regulation of iron ion transmembrane transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl down regulation of iron cation channel activity|negative regulation of iron-specific channel activity|down regulation of iron-specific channel activity|negative regulation of iron channel activity|down-regulation of iron channel activity|downregulation of iron channel activity|inhibition of iron cation channel activity|inhibition of iron channel activity|down-regulation of iron-specific channel activity|negative regulation of iron cation channel activity|downregulation of iron cation channel activity|down-regulation of iron cation channel activity|down regulation of iron channel activity|inhibition of iron-specific channel activity|downregulation of iron-specific channel activity kom 2015-05-20T14:05:06Z biological_process owl:Class GO:0097581 biolink:NamedThing lamellipodium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lamellipodium. A lamellipodium is a thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments. tmpzr1t_l9r_go_relaxed.owl pr 2014-02-28T16:08:56Z biological_process owl:Class GO:0045284 biolink:NamedThing plasma membrane fumarate reductase complex A membrane-bound flavoenzyme complex consisting of four subunits, A, B, C, and D. A and B comprise the membrane-extrinsic catalytic domain and C (InterPro:IPR003510; InterPro:IPR00224) and D (InterPro:IPR003418) link the catalytic centers to the electron-transport chain. In some species, the complex has only three subunits, and in these cases, there is only one membrane anchor instead of two. This family consists of the 13 kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalyzed by the related complex II of the respiratory chain (succinate dehydrogenase-(ubiquinone)). Examples of this component are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl fumarate reductase complex See also the molecular function term 'succinate dehydrogenase (ubiquinone) activity ; GO:0008177'. cellular_component owl:Class GO:0045179 biolink:NamedThing apical cortex The region that lies just beneath the plasma membrane on the apical edge of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072567 biolink:NamedThing chemokine (C-X-C motif) ligand 2 production The appearance of chemokine (C-X-C motif) ligand 2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl MIP-2 production|SCYB2 production|MIP2 production|CXCL2 production mah 2011-01-31T11:33:40Z biological_process owl:Class GO:0016068 biolink:NamedThing type I hypersensitivity An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells or basophils, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines. tmpzr1t_l9r_go_relaxed.owl immediate hypersensitivity response Wikipedia:Type_I_hypersensitivity Note that localized and systemic anaphylaxis is usually a result of type I hypersensitivity. biological_process owl:Class GO:0032105 biolink:NamedThing negative regulation of response to extracellular stimulus Any process that stops, prevents, or reduces the frequency, rate or extent of a response to an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl down regulation of response to extracellular stimulus|down-regulation of response to extracellular stimulus|inhibition of response to extracellular stimulus|downregulation of response to extracellular stimulus biological_process owl:Class GO:0010097 biolink:NamedThing specification of stamen identity The process in which a floral organ primordium acquires stamen or staminode identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048455 biolink:NamedThing stamen formation The process that contributes to the act of giving rise to the stamen. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048427 biological_process owl:Class GO:0045214 biolink:NamedThing sarcomere organization The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs. tmpzr1t_l9r_go_relaxed.owl sarcomere organisation|sarcomere alignment GO:0006938 biological_process owl:Class GO:0048085 biolink:NamedThing adult chitin-containing cuticle pigmentation Establishment of the adult pattern of pigmentation in the chitin-containing cuticle of an organism. An example of this is the adult cuticle pigmentation process in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl adult cuticle pigmentation GO:0048068 biological_process owl:Class GO:0035992 biolink:NamedThing tendon formation The process that gives rise to a tendon. This process pertains to the initial formation of a tendon from unspecified parts. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-30T01:35:10Z biological_process owl:Class GO:0048716 biolink:NamedThing labrum morphogenesis The process in which the anatomical structures of labrum are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030129 biolink:NamedThing clathrin coat of synaptic vesicle A clathrin coat found on a synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021663 biolink:NamedThing rhombomere 4 formation The process that gives rise to rhombomere 4. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038202 biolink:NamedThing TORC1 signaling A series of intracellular molecular signals mediated by TORC1; TOR (target of rapamycin) in complex with at least Raptor (regulatory-associated protein of TOR), or orthologs of, and other signaling components. tmpzr1t_l9r_go_relaxed.owl TORC1 signal transduction bf 2013-12-09T14:43:29Z biological_process owl:Class GO:0036124 biolink:NamedThing histone H3-K9 trimethylation The modification of histone H3 by addition of three methyl groups to lysine at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl bf 2012-02-20T03:08:06Z biological_process owl:Class GO:0000302 biolink:NamedThing response to reactive oxygen species Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. tmpzr1t_l9r_go_relaxed.owl response to AOS|response to reactive oxygen intermediate|response to ROI|response to active oxygen species|response to reactive oxidative species|response to ROS biological_process owl:Class GO:0140220 biolink:NamedThing pathogen-containing vacuole A membrane-bound intracellular compartment that is formed upon internalization of a pathogen into a host cell, and in which the pathogen resides. tmpzr1t_l9r_go_relaxed.owl pathogen-containing compartment|pathogen inclusion https://github.com/geneontology/go-ontology/issues/15580 pg 2018-04-20T06:02:14Z cellular_component owl:Class GO:0004055 biolink:NamedThing argininosuccinate synthase activity Catalysis of the reaction: ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate. tmpzr1t_l9r_go_relaxed.owl argininosuccinate synthetase activity|arginosuccinate synthetase activity|L-citrulline:L-aspartate ligase (AMP-forming)|argininosuccinic acid synthetase activity|citrulline--aspartate ligase activity|arginine succinate synthetase activity Reactome:R-HSA-70577|EC:6.3.4.5|MetaCyc:ARGSUCCINSYN-RXN|RHEA:10932 molecular_function owl:Class GO:1902476 biolink:NamedThing chloride transmembrane transport The process in which chloride is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl bf 2013-10-28T09:44:29Z biological_process owl:Class GO:0032205 biolink:NamedThing negative regulation of telomere maintenance Any process that stops, prevents, or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl inhibition of telomere maintenance|down-regulation of telomere maintenance|down regulation of telomere maintenance|downregulation of telomere maintenance biological_process owl:Class GO:0005967 biolink:NamedThing mitochondrial pyruvate dehydrogenase complex Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA in eukaryotes; includes subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). The This Eukaryotic form usually contains more subunits than its bacterial counterpart; for example, one known complex contains 30 E1 dimers, 60 E2 monomers, and 6 E3 dimers as well as a few copies of pyruvate dehydrogenase kinase and pyruvate dehydrogenase phosphatase. tmpzr1t_l9r_go_relaxed.owl pyruvate dehydrogenase complex (lipoamide) Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The functions of this complex are represented by the molecular function terms 'pyruvate dehydrogenase (lipoamide) activity ; GO:0004739', 'dihydrolipoamide S-acetyltransferase activity ; GO:0004742', and 'dihydrolipoamide dehydrogenase activity ; GO:0004148'. cellular_component owl:Class GO:0010644 biolink:NamedThing cell communication by electrical coupling The process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904370 biolink:NamedThing regulation of protein localization to actin cortical patch Any process that modulates the frequency, rate or extent of protein localization to actin cortical patch. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to actin cortical patch sl 2015-06-18T22:23:31Z biological_process owl:Class GO:0099534 biolink:NamedThing calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration The directed change of presynaptic cytosolic free calcium ion concentration in the cytosol via the reversible binding of calcium ions to calcium-binding proteins in the cytosol thereby modulating the spatial and temporal dynamics of changes in presynaptic cytosolic calcium concentrations. tmpzr1t_l9r_go_relaxed.owl presynaptic calcium ion buffering|calcium ion binding involved in regulation of presynaptic cytosolic calcium levels|regulation of presynaptic cytosolic calcium ion concentration by calcium ion buffering molecular_function owl:Class GO:0070685 biolink:NamedThing macropinocytic cup A cell projection that forms at the site of macropinocytosis, a form of endocytosis that results in the uptake of relatively large amounts of extracellular fluid. The macropinocytic cup membrane selectively excludes certain proteins, such as H36 or PM4C4 in Dictyostelium, and the underlying cytoskeleton is enriched in F-actin and coronin. tmpzr1t_l9r_go_relaxed.owl crown mah 2009-06-03T10:18:00Z cellular_component owl:Class GO:0042645 biolink:NamedThing mitochondrial nucleoid The region of a mitochondrion to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008200 biolink:NamedThing ion channel inhibitor activity Binds to and stops, prevents, or reduces the activity of an ion channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070254 biolink:NamedThing mucus secretion The regulated release of mucus by the mucosa. Mucus is a viscous slimy secretion consisting of mucins and various inorganic salts dissolved in water, with suspended epithelial cells and leukocytes. The mucosa, or mucous membrane, is the membrane covered with epithelium that lines the tubular organs of the body. Mucins are carbohydrate-rich glycoproteins that have a lubricating and protective function. tmpzr1t_l9r_go_relaxed.owl mucus production biological_process owl:Class GO:1901589 biolink:NamedThing axon microtubule bundle An arrangement of closely apposed microtubules running parallel to each other in the axon hillock and initial segment. tmpzr1t_l9r_go_relaxed.owl axon microtubule fascicle|microtubule fascicle of axon|microtubule bundle of axon NIF_Subcellular:sao707332678 pr 2012-11-07T15:37:12Z cellular_component owl:Class GO:0002572 biolink:NamedThing pro-T cell differentiation The process in which a precursor cell type acquires the specialized features of a pro-T cell. Pro-T cells are the earliest stage of the T cell lineage but are not fully committed. tmpzr1t_l9r_go_relaxed.owl pro-T lymphocyte differentiation biological_process owl:Class GO:0035930 biolink:NamedThing corticosteroid hormone secretion The regulated release of any corticosteroid hormone into the circulatory system. tmpzr1t_l9r_go_relaxed.owl corticosteroid secretion bf 2011-07-20T01:03:22Z biological_process owl:Class GO:0043679 biolink:NamedThing axon terminus Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal button is a specialized region of it. tmpzr1t_l9r_go_relaxed.owl nerve ending|axon terminal specialization|axon terminal NIF_Subcellular:nlx_subcell_20090512 cellular_component owl:Class GO:0061697 biolink:NamedThing protein-glutaryllysine deglutarylase activity Catalysis of the reaction: H2O + N(6)-glutaryl-L-lysyl-[protein] + NAD(+) = 2''-O-glutaryl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide. tmpzr1t_l9r_go_relaxed.owl RHEA:47664 This reaction is the removal of a glutaryl group from a glutarylated lysine residue of a protein or peptide. dph 2015-05-07T10:55:53Z molecular_function owl:Class GO:0061699 biolink:NamedThing peptidyl-lysine deglutarylation The removal of a glutaryl group (CO-CH2-CH2--CH2-CO) from a glutarylated lysine residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-07T11:04:42Z biological_process owl:Class GO:0043597 biolink:NamedThing cytoplasmic replication fork The Y-shaped region of a cytoplasmic replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014020 biolink:NamedThing primary neural tube formation The formation of the neural tube from an epithelial cell sheet (the neuroepithelium or neural plate). In primary neurulation, the cells surrounding the neural plate direct the neural plate cells to proliferate, invaginate, and pinch off from the surface to form a hollow epithelial tube. Primary neurulation is the typical mechanism of formation of the anterior neural tube. tmpzr1t_l9r_go_relaxed.owl primary neurulation|primary neural tube morphogenesis biological_process owl:Class GO:0060032 biolink:NamedThing notochord regression The developmental process in which the stucture of the notochord is destroyed in an embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048570 biolink:NamedThing notochord morphogenesis The process in which the anatomical structures of the notochord are generated and organized. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010857 biolink:NamedThing calcium-dependent protein kinase activity Calcium-dependent catalysis of the reaction: a protein + ATP = a phosphoprotein + ADP. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8986937|Reactome:R-HSA-9005561 This reaction requires the presence of calcium. molecular_function owl:Class GO:0021532 biolink:NamedThing neural tube patterning The regionalization process that regulates the coordinated growth that establishes the non-random spatial arrangement of the neural tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021915 biolink:NamedThing neural tube development The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009574 biolink:NamedThing preprophase band A dense band of microtubules, 1-3 pm wide, that appears just beneath the cell membrane before the start of cell division in the cells of higher plants. It precedes the onset of prophase and then disappears as mitosis begins, yet it somehow determines the plane of orientation of the new cell plate forming in late telophase and marks the zone of the parental cell wall where fusion with the growing cell plate ultimately occurs. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Preprophase_band cellular_component owl:Class GO:0010797 biolink:NamedThing regulation of multivesicular body size involved in endosome transport Any process that modulates the volume of a multivesicular body as part of the directed movement of substances from endosomes to lysosomes or vacuoles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009360 biolink:NamedThing DNA polymerase III complex The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork. tmpzr1t_l9r_go_relaxed.owl DNA polymerase III holoenzyme complex cellular_component owl:Class GO:0010778 biolink:NamedThing meiotic DNA repair synthesis involved in reciprocal meiotic recombination The synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071142 biolink:NamedThing homomeric SMAD protein complex A protein complex composed of a single type of SMAD family proteins. In the absence of Smad4, phosphorylation of R-SMADs results in their homotrimerization. However, these complexes do not appear to import into the nucleus and are assumed to be transcriptionally inactive. tmpzr1t_l9r_go_relaxed.owl SMAD3 homotrimer complex|SMAD2 protein complex|SMAD1 protein complex|SMAD3 protein complex|SMAD1 homotrimer complex|SMAD2 homotrimer complex mah 2009-11-16T02:41:19Z GO:0071143 cellular_component owl:Class GO:1902686 biolink:NamedThing mitochondrial outer membrane permeabilization involved in programmed cell death The process by which the mitochondrial outer membrane becomes permeable to the passing of proteins and other molecules from the intermembrane space to the cytosol as part of a programmed cell death process. tmpzr1t_l9r_go_relaxed.owl mitochondrial membrane permeability transition involved in regulated cell death|MPT involved in programmed cell death|mitochondrial membrane permeabilization involved in caspase-independent cell death|mitochondrial membrane permeability transition involved in PCD|mitochondrial permeability transition involved in programmed cell death|MPT involved in caspase-independent apoptosis|mitochondrion outer membrane permeabilization involved in programmed cell death|MPT involved in caspase-independent cell death|positive regulation of transport across mitochondrial membrane involved in caspase-independent apoptosis|mitochondrial permeability transition involved in regulated cell death|mitochondrial outer membrane permeabilization during programmed cell death|mitochondrial membrane permeabilization involved in regulated cell death|positive regulation of mitochondrial membrane permeability involved in programmed cell death|mitochondrial membrane permeability transition involved in programmed cell death|MPT involved in PCD|mitochondrial membrane permeability transition involved in caspase-independent cell death|mitochondrial membrane permeabilization involved in caspase-independent apoptosis|mitochondrial membrane permeabilization involved in non-apoptotic programmed cell death|MPT involved in nonapoptotic programmed cell death|mitochondrial permeability transition involved in PCD|positive regulation of mitochondrial membrane permeability involved in non-apoptotic programmed cell death|MPT involved in regulated cell death|mitochondrial membrane permeabilization involved in PCD|positive regulation of transport across mitochondrial membrane involved in programmed cell death|mitochondrial permeability transition involved in caspase-independent apoptosis|mitochondrial permeability transition involved in caspase-independent cell death|mitochondrial permeability transition involved in nonapoptotic programmed cell death|mitochondrial membrane permeability transition involved in nonapoptotic programmed cell death|MPT involved in non-apoptotic programmed cell death|positive regulation of transport across mitochondrial membrane involved in nonapoptotic programmed cell death|positive regulation of mitochondrial membrane permeability involved in caspase-independent apoptosis|positive regulation of mitochondrial membrane permeability involved in caspase-independent cell death|mitochondrial membrane permeability transition involved in non-apoptotic programmed cell death|mitochondrial permeability transition involved in non-apoptotic programmed cell death|positive regulation of transport across mitochondrial membrane involved in non-apoptotic programmed cell death|positive regulation of transport across mitochondrial membrane involved in regulated cell death|positive regulation of mitochondrial membrane permeability involved in PCD|positive regulation of transport across mitochondrial membrane involved in caspase-independent cell death|mitochondrial membrane permeabilization involved in nonapoptotic programmed cell death|positive regulation of transport across mitochondrial membrane involved in PCD|positive regulation of mitochondrial membrane permeability involved in regulated cell death|mitochondrial membrane permeability transition involved in caspase-independent apoptosis|positive regulation of mitochondrial membrane permeability involved in nonapoptotic programmed cell death|mitochondrial membrane permeabilization involved in programmed cell death pr 2014-02-10T12:56:34Z biological_process owl:Class GO:0060624 biolink:NamedThing regulation of ascospore wall (1->3)-beta-D-glucan biosynthetic process Any process that modulates the rate, frequency, or extent of ascospore wall (1->3)-beta-D-glucan biosynthetic process, the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D--glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl regulation of ascospore wall 1,3-beta-glucan biosynthetic process|regulation of ascospore wall 1,3-beta-D-glucan biosynthetic process dph 2009-05-18T02:18:10Z biological_process owl:Class GO:0051620 biolink:NamedThing norepinephrine uptake The directed movement of norepinephrine into a cell, typically presynaptic neurons or glial cells. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl norepinephrine import|levarterenol uptake|noradrenaline uptake|noradrenaline reuptake|norepinephrine reuptake|levarterenol reuptake biological_process owl:Class GO:0070043 biolink:NamedThing rRNA (guanine-N7-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N7-methylguanine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6790982 molecular_function owl:Class GO:0070476 biolink:NamedThing rRNA (guanine-N7)-methylation The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140620 biolink:NamedThing DNA strand exchange inhibitor activity Binds to and stops, prevents or reduces a DNA strand exchange activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20964 pg 2021-02-26T17:57:00Z molecular_function owl:Class GO:0000150 biolink:NamedThing DNA strand exchange activity Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl strand exchange activity|recombinase activity|RecA-family recombinase activity|strand transferase https://github.com/geneontology/go-ontology/issues/20964 Reactome:R-HSA-912458 Note that this term represents activities that do not break or form phosphodiester bonds, and is therefore not a parent of 'site-specific recombinase activity ; GO:0009009'. molecular_function owl:Class GO:1904280 biolink:NamedThing negative regulation of transcription by RNA polymerase V Any process that stops, prevents or reduces the frequency, rate or extent of transcription mediated by RNA polymerase V. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription from RNA pol V promoter|negative regulation of transcription from RNA polymerase V promoter|down-regulation of transcription from RNA polymerase V promoter|down regulation of transcription from RNA polymerase V promoter|negative regulation of transcription from RNA pol V promoter|downregulation of transcription from RNA polymerase V promoter|down regulation of transcription from RNA pol V promoter|inhibition of transcription from RNA polymerase V promoter|inhibition of transcription from RNA pol V promoter|down-regulation of transcription from RNA pol V promoter tb 2015-06-03T22:01:54Z biological_process owl:Class GO:0001055 biolink:NamedThing RNA polymerase II activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase activity involved in transcription from RNA polymerase II promoter Reactome:R-HSA-6814559|Reactome:R-HSA-6814549 krc 2010-09-23T03:44:23Z molecular_function owl:Class GO:0021706 biolink:NamedThing locus ceruleus maturation A developmental process, independent of morphogenetic (shape) change, that is required for the locus ceruleus to attain its fully functional state. The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021586 biolink:NamedThing pons maturation A developmental process, independent of morphogenetic (shape) change, that is required for the pons to attain its fully functional state. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033091 biolink:NamedThing positive regulation of immature T cell proliferation Any process that activates or increases the frequency, rate or extent of immature T cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007339 biolink:NamedThing binding of sperm to zona pellucida The process in which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place. tmpzr1t_l9r_go_relaxed.owl ZPG binding biological_process owl:Class GO:1901329 biolink:NamedThing regulation of odontoblast differentiation Any process that modulates the frequency, rate or extent of odontoblast differentiation. tmpzr1t_l9r_go_relaxed.owl hjd 2012-08-31T16:50:05Z biological_process owl:Class GO:0061271 biolink:NamedThing mesenchymal to epithelial transition involved in mesonephric renal vesicle formation A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the mesonephric renal vesicle. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T03:26:30Z biological_process owl:Class GO:1900318 biolink:NamedThing regulation of methane biosynthetic process from dimethylamine Any process that modulates the frequency, rate or extent of methane biosynthetic process from dimethylamine. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:43:21Z biological_process owl:Class GO:0033618 biolink:NamedThing plasma membrane respiratory chain complex IV assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane cytochrome c oxidase biogenesis|plasma membrane cytochrome c oxidase complex assembly biological_process owl:Class GO:0061450 biolink:NamedThing trophoblast cell migration Trophoblast cell migration that is accomplished by extension and retraction of a pseudopodium. Trophoblast cells line the outside of the blastocyst. tmpzr1t_l9r_go_relaxed.owl dph 2012-07-10T08:38:37Z biological_process owl:Class GO:0021907 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in spinal cord anterior/posterior pattern formation The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway in spinal cord anterior-posterior patterning biological_process owl:Class GO:0036162 biolink:NamedThing oxytocin production The appearance of oxytocin, a cyclic nonapeptide hormone with amino acid sequence CYIQNCPLG, due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Oxytocin is the principal uterine-contracting and milk-ejecting hormone of the posterior pituitary, and together with the neuropeptide vasopressin, is believed to influence social cognition and behavior. It also acts as a neurotransmitter in the brain. tmpzr1t_l9r_go_relaxed.owl oxytocin biosynthesis|oxytocin secretion https://github.com/geneontology/go-ontology/issues/21535|https://github.com/geneontology/go-ontology/issues/9542 Note that this term is intended for use when a gene product is seen to cause apparent increases in intracellular or extracellular oxytocin levels, without specific regard as to whether the increase is due to increased biosynthesis, increased secretion of preexisting oxytocin molecules, or increased conversion from precursor molecules. bf 2012-03-26T01:43:46Z biological_process owl:Class GO:2001150 biolink:NamedThing positive regulation of dipeptide transmembrane transport Any process that activates or increases the frequency, rate or extent of dipeptide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of dipeptide membrane transport kmv 2011-10-21T06:10:03Z biological_process owl:Class GO:0007422 biolink:NamedThing peripheral nervous system development The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060673 biolink:NamedThing cell-cell signaling involved in placenta development Any process that mediates the transfer of information from one cell to another. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in placenta development dph 2009-06-02T12:58:03Z biological_process owl:Class GO:0000386 biolink:NamedThing second spliceosomal transesterification activity Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure. tmpzr1t_l9r_go_relaxed.owl 3'-splice site cleavage, exon ligation|lariat formation, 5'-splice site cleavage molecular_function owl:Class GO:0033099 biolink:NamedThing attachment organelle A membrane-bounded extension of the cell, originally characterized in Mycoplasma species, that contains an electron-dense core that is part of the cytoskeleton and is oriented lengthwise and ends distally in a bulbous knob (terminal button). Required for adherence to host cells and involved in gliding motility and cell division. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097564 biolink:NamedThing right lateral basal body pair Set of two basal bodies found in Giardia species (trophozoite stage). It comprises the anterior and ventral basal bodies located to the left of the right nucleus of the trophozoite when viewed dorsally. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:12:42Z cellular_component owl:Class GO:0000477 biolink:NamedThing generation of mature 5'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Cleavage within ITS2 to generate the mature 5'-end of an LSU-rRNA derived from a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl processing at C1 biological_process owl:Class GO:1990499 biolink:NamedThing raps-insc complex Protein complex required for the asymmetric division of neuroblasts in Drosophila. Coordinates asymmetric localization of cell fate determinants with orientation of the mitotic spindle resulting in different daughter cells upon division. Localizes at the apical cortex of the neuroblast: Raps maintains, but does not initiate, Insc apically, while Insc segregates Raps asymmetrically. Complex appears to be conserved in mammals (composed of INSC and GPSM1 or GPSM2). tmpzr1t_l9r_go_relaxed.owl partner of inscuteable-inscuteable complex|Rapsynoid-Inscuteable complex An example of this is Insc in drome (Q9W2R4) in PMID:22171003 (inferred from physical interaction). bhm 2014-09-30T09:22:18Z cellular_component owl:Class GO:1904600 biolink:NamedThing actin fusion focus assembly The aggregation, arrangement and bonding together of a set of components to form an actin fusion focus. tmpzr1t_l9r_go_relaxed.owl actin fusion focus formation https://github.com/geneontology/go-ontology/issues/21688 al 2015-08-26T10:34:48Z biological_process owl:Class GO:0072127 biolink:NamedThing renal capsule development The process whose specific outcome is the progression of the renal capsule over time, from its formation to the mature structure. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:02:55Z biological_process owl:Class GO:1990230 biolink:NamedThing iron-sulfur cluster transfer complex A protein complex capable of catalyzing the transfer of an iron-sulfur (Fe-S) cluster from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl IscA complex|Fe-S cluster transfer complex|SufA complex|SufA dimer bhm 2013-11-12T09:17:40Z cellular_component owl:Class GO:1900420 biolink:NamedThing negative regulation of cellular alcohol catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellular alcohol catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular alcohol catabolic process|down regulation of cellular alcohol catabolic process|downregulation of cellular alcohol catabolic process|inhibition of cellular alcohol catabolic process krc 2012-04-20T10:21:28Z biological_process owl:Class GO:0035480 biolink:NamedThing regulation of Notch signaling pathway involved in heart induction Any process that modulates the frequency, rate or extent of the series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl regulation of Notch signalling pathway involved in heart induction bf 2010-04-23T10:40:48Z biological_process owl:Class GO:0003137 biolink:NamedThing Notch signaling pathway involved in heart induction The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway involved in heart induction tb 2009-09-22T03:28:42Z biological_process owl:Class GO:0070377 biolink:NamedThing negative regulation of ERK5 cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the ERK5 cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of BMK signaling pathway|down regulation of BMK cascade|down-regulation of BMK cascade|negative regulation of BMK cascade|negative regulation of BMK signalling pathway|negative regulation of ERK5 signaling pathway|negative regulation of BMK1 cascade|downregulation of BMK cascade|negative regulation of MAPK7 cascade|inhibition of BMK cascade biological_process owl:Class GO:1902646 biolink:NamedThing regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process Any process that modulates the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation|regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis|regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism|regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis di 2014-01-21T17:57:57Z biological_process owl:Class GO:0032012 biolink:NamedThing regulation of ARF protein signal transduction Any process that modulates the frequency, rate or extent of ARF protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032011 biolink:NamedThing ARF protein signal transduction A series of molecular signals within the cell that are mediated by a member of the ARF family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050871 biolink:NamedThing positive regulation of B cell activation Any process that activates or increases the frequency, rate or extent of B cell activation. tmpzr1t_l9r_go_relaxed.owl positive regulation of B lymphocyte activation|up regulation of B cell activation|activation of B cell activation|stimulation of B cell activation|positive regulation of B-lymphocyte activation|positive regulation of B-cell activation|upregulation of B cell activation|up-regulation of B cell activation biological_process owl:Class GO:0071608 biolink:NamedThing macrophage inflammatory protein-1 alpha production The appearance of macrophage inflammatory protein 1 alpha due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl macrophage inflammatory protein production|MIP-1a production|chemokine (C-C motif) ligand 3 production|CCL3 production mah 2010-02-05T04:24:17Z biological_process owl:Class GO:0038083 biolink:NamedThing peptidyl-tyrosine autophosphorylation The phosphorylation by a protein of one or more of its own tyrosine amino acid residues, or a tyrosine residue on an identical protein. tmpzr1t_l9r_go_relaxed.owl tyrosine autophosphorylation|receptor tyrosine kinase autophosphorylation|RTK autophosphorylation bf 2012-02-01T02:14:18Z biological_process owl:Class GO:0009052 biolink:NamedThing pentose-phosphate shunt, non-oxidative branch The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P. tmpzr1t_l9r_go_relaxed.owl pentose phosphate shunt, non-oxidative branch|pentose phosphate pathway, non-oxidative branch|pentose-phosphate pathway, non-oxidative branch MetaCyc:P21-PWY|MetaCyc:NONOXIPENT-PWY biological_process owl:Class GO:1900209 biolink:NamedThing negative regulation of cardiolipin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cardiolipin metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of cardiolipin metabolic process|downregulation of cardiolipin metabolism|down-regulation of diphosphatidylglycerol metabolic process|inhibition of cardiolipin metabolism|down regulation of cardiolipin metabolism|down-regulation of diphosphatidylglycerol metabolism|negative regulation of cardiolipin metabolism|negative regulation of diphosphatidylglycerol metabolic process|downregulation of diphosphatidylglycerol metabolism|down regulation of diphosphatidylglycerol metabolic process|inhibition of diphosphatidylglycerol metabolic process|downregulation of diphosphatidylglycerol metabolic process|down regulation of cardiolipin metabolic process|down-regulation of cardiolipin metabolism|negative regulation of diphosphatidylglycerol metabolism|inhibition of diphosphatidylglycerol metabolism|down regulation of diphosphatidylglycerol metabolism|downregulation of cardiolipin metabolic process|down-regulation of cardiolipin metabolic process jl 2012-03-22T10:43:43Z biological_process owl:Class GO:0048208 biolink:NamedThing COPII vesicle coating The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl COPII vesicle coat formation|COPII coating of ER-derived vesicle|COPII vesicle coat assembly biological_process owl:Class GO:0090114 biolink:NamedThing COPII-coated vesicle budding The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle. tmpzr1t_l9r_go_relaxed.owl ER exit|COPII vesicle budding|ER vesicle budding tb 2009-12-06T09:21:16Z biological_process owl:Class GO:0003130 biolink:NamedThing BMP signaling pathway involved in heart induction A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in heart induction tb 2009-09-22T03:02:00Z biological_process owl:Class GO:0003134 biolink:NamedThing endodermal-mesodermal cell signaling involved in heart induction Any process that mediates the transfer of information from endodermal cells to mesodermal cells that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl endodermal-mesodermal cell signalling involved in heart induction tb 2009-09-22T03:11:17Z biological_process owl:Class GO:1905488 biolink:NamedThing positive regulation of anterior/posterior axon guidance Any process that activates or increases the frequency, rate or extent of anterior/posterior axon guidance. tmpzr1t_l9r_go_relaxed.owl up regulation of anterior/posterior axon pathfinding|activation of anterior/posterior axon pathfinding|activation of anterior-posterior axon guidance|up-regulation of anterior-posterior axon guidance|up regulation of anterior/posterior axon guidance|activation of anterior/posterior axon guidance|upregulation of anterior-posterior axon guidance|positive regulation of anterior/posterior axon pathfinding|up-regulation of anterior/posterior axon pathfinding|up regulation of anterior-posterior axon guidance|up-regulation of anterior/posterior axon guidance|upregulation of anterior/posterior axon pathfinding|positive regulation of anterior-posterior axon guidance|upregulation of anterior/posterior axon guidance hbye 2016-09-23T13:18:48Z biological_process owl:Class GO:0039689 biolink:NamedThing negative stranded viral RNA replication A viral genome replication process where the template genome is negative stranded, single stranded RNA ((-)ssRNA). tmpzr1t_l9r_go_relaxed.owl (-)ss viral RNA replication VZ:1096 bf 2013-10-17T15:40:27Z biological_process owl:Class GO:0039696 biolink:NamedThing RNA-templated viral transcription A transcription process that uses viral RNA as a template. tmpzr1t_l9r_go_relaxed.owl bf 2013-10-28T13:28:01Z biological_process owl:Class GO:0032726 biolink:NamedThing positive regulation of hepatocyte growth factor production Any process that activates or increases the frequency, rate, or extent of hepatocyte growth factor production. tmpzr1t_l9r_go_relaxed.owl stimulation of hepatocyte growth factor production|activation of hepatocyte growth factor production|positive regulation of HGF production|up regulation of hepatocyte growth factor production|up-regulation of hepatocyte growth factor production|positive regulation of hepatocyte growth factor biosynthetic process|upregulation of hepatocyte growth factor production|positive regulation of scatter factor production GO:0048177 biological_process owl:Class GO:0032605 biolink:NamedThing hepatocyte growth factor production The appearance of hepatocyte growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl scatter factor production|HGF production|hepatocyte growth factor biosynthetic process GO:0048175 biological_process owl:Class GO:0044311 biolink:NamedThing exoneme A dense granule-like organelle of the apical complex of merozoites, released into the parasitophorous vacuole, mediating protease-dependent rupture and parasite exit from the infected erythrocyte. tmpzr1t_l9r_go_relaxed.owl jl 2010-02-18T03:29:56Z cellular_component owl:Class GO:0009419 biolink:NamedThing pilus tip The pointed extremity furthest from the cell of a pilus. tmpzr1t_l9r_go_relaxed.owl fimbrial tip cellular_component owl:Class GO:0009289 biolink:NamedThing pilus A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter. tmpzr1t_l9r_go_relaxed.owl fimbria|fimbrium|pili|fimbriae Wikipedia:Pilus cellular_component owl:Class GO:0031152 biolink:NamedThing aggregation involved in sorocarp development The process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug. tmpzr1t_l9r_go_relaxed.owl aggregation during fruiting body development|aggregate development involved in sorocarp development biological_process owl:Class GO:0061093 biolink:NamedThing negative regulation of phospholipid translocation Any process that decreases the frequency, rate or extent of the translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:54:22Z biological_process owl:Class GO:2001128 biolink:NamedThing methane biosynthetic process from methylamine The chemical reactions and pathways resulting in the formation of a methane from a methylamine. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T10:23:25Z biological_process owl:Class GO:1905839 biolink:NamedThing negative regulation of telomeric D-loop disassembly Any process that stops, prevents or reduces the frequency, rate or extent of telomeric D-loop disassembly. tmpzr1t_l9r_go_relaxed.owl inhibition of telomeric D-loop disassembly|down regulation of telomeric D-loop disassembly|down-regulation of telomeric D-loop disassembly|downregulation of telomeric D-loop disassembly nc 2017-01-18T11:01:47Z biological_process owl:Class GO:0061820 biolink:NamedThing telomeric D-loop disassembly A telomere loop disassembly process that results in the disassembly of telomeric D-loops. A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus. tmpzr1t_l9r_go_relaxed.owl dph biological_process owl:Class GO:2000351 biolink:NamedThing regulation of endothelial cell apoptotic process Any process that modulates the frequency, rate or extent of endothelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of endothelial cell programmed cell death by apoptosis|regulation of apoptosis of endothelial cells|regulation of programmed cell death of endothelial cells by apoptosis|regulation of programmed cell death, endothelial cells|regulation of killing of endothelial cells|regulation of endothelial cell apoptosis mah 2011-02-03T10:43:16Z biological_process owl:Class GO:0072577 biolink:NamedThing endothelial cell apoptotic process Any apoptotic process in an endothelial cell. An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. tmpzr1t_l9r_go_relaxed.owl programmed cell death, endothelial cells|killing of endothelial cells|endothelial cell apoptosis|programmed cell death of endothelial cells by apoptosis|apoptosis of endothelial cells|endothelial cell programmed cell death by apoptosis mah 2011-02-02T03:56:24Z biological_process owl:Class GO:2000795 biolink:NamedThing negative regulation of epithelial cell proliferation involved in lung morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell proliferation involved in lung morphogenesis. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-25T07:22:42Z biological_process owl:Class GO:0044336 biolink:NamedThing canonical Wnt signaling pathway involved in negative regulation of apoptotic process The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the negative regulation of apoptotic process. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in negative regulation of apoptotic process|canonical Wnt receptor signalling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis jl 2010-08-20T03:07:53Z biological_process owl:Class GO:0001808 biolink:NamedThing negative regulation of type IV hypersensitivity Any process that stops, prevents, or reduces the rate of type IV hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl down-regulation of type IV hypersensitivity|downregulation of type IV hypersensitivity|down regulation of type IV hypersensitivity|inhibition of type IV hypersensitivity biological_process owl:Class GO:0001806 biolink:NamedThing type IV hypersensitivity An inflammatory response driven by T cell recognition of processed soluble or cell-associated antigens leading to cytokine release and leukocyte activation. tmpzr1t_l9r_go_relaxed.owl delayed-type hypersensitivity|delayed hypersensitivity response Wikipedia:Type_IV_hypersensitivity GO:0016069 biological_process owl:Class GO:0001999 biolink:NamedThing renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure The physiological response of the kidneys to a decrease in blood flow. tmpzr1t_l9r_go_relaxed.owl renal response to blood flow during renin-angiotensin control of blood pressure biological_process owl:Class GO:1902359 biolink:NamedThing Notch signaling pathway involved in somitogenesis Any Notch signaling pathway that is involved in somitogenesis. tmpzr1t_l9r_go_relaxed.owl Notch receptor signalling pathway involved in somitogenesis|Notch-receptor signaling pathway involved in somitogenesis|Notch receptor signaling pathway involved in somitogenesis|N signalling pathway involved in somitogenesis|Notch signalling pathway involved in formation of mesodermal clusters|Notch receptor signaling pathway involved in formation of mesodermal clusters|N signaling pathway involved in somitogenesis|Notch receptor signalling pathway involved in formation of mesodermal clusters|N signalling pathway involved in formation of mesodermal clusters|Notch-receptor signalling pathway involved in formation of mesodermal clusters|Notch signalling pathway involved in somitogenesis|Notch-receptor signalling pathway involved in somitogenesis|N signaling pathway involved in formation of mesodermal clusters|Notch signaling pathway involved in formation of mesodermal clusters|Notch-receptor signaling pathway involved in formation of mesodermal clusters dph 2013-08-14T17:31:43Z biological_process owl:Class GO:0061066 biolink:NamedThing positive regulation of dauer larval development Any process that increases the rate, frequency, or extent of dauer larval development, the process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T01:09:11Z biological_process owl:Class GO:0040024 biolink:NamedThing dauer larval development The process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000435 biolink:NamedThing negative regulation of protein neddylation Any process that stops, prevents or reduces the frequency, rate or extent of protein neddylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of RUB1-protein conjugation vw 2011-03-03T02:05:56Z biological_process owl:Class GO:1902044 biolink:NamedThing regulation of Fas signaling pathway Any process that modulates the frequency, rate or extent of Fas signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of Fas receptor signaling pathway|regulation of CD95 signaling pathway|regulation of FasR signaling pathway|regulation of Apo-1 signaling pathway|regulation of FAS ligand-Fas signaling pathway|regulation of Fas-FasL signaling pathway|regulation of FasL signaling pathway lb 2013-04-03T07:21:23Z biological_process owl:Class GO:0048616 biolink:NamedThing post-embryonic anterior midgut (ectodermal) morphogenesis The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the post-embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048614 biolink:NamedThing post-embryonic ectodermal digestive tract morphogenesis The process, occurring during the post-embryonic phase, by which the anatomical structures of the ectodermal gut are generated and organized. tmpzr1t_l9r_go_relaxed.owl post-embryonic ectodermal gut morphogenesis biological_process owl:Class GO:0033372 biolink:NamedThing establishment of protease localization to mast cell secretory granule The directed movement of a protease to a location within a secretory granule in a mast cell. tmpzr1t_l9r_go_relaxed.owl establishment of protease localization in mast cell secretory granule|establishment of protease localisation in mast cell secretory granule biological_process owl:Class GO:0016559 biolink:NamedThing peroxisome fission The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments. tmpzr1t_l9r_go_relaxed.owl peroxisome division|peroxisome proliferation biological_process owl:Class GO:0007031 biolink:NamedThing peroxisome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. tmpzr1t_l9r_go_relaxed.owl peroxisome organisation|peroxisome-assembly ATPase activity|peroxisome organization and biogenesis biological_process owl:Class GO:1905910 biolink:NamedThing negative regulation of dauer entry Any process that stops, prevents or reduces the frequency, rate or extent of dauer entry. tmpzr1t_l9r_go_relaxed.owl negative regulation of nematode entry into dormancy|inhibition of nematode entry into dormancy|down regulation of dauer entry|down-regulation of dauer entry|downregulation of dauer entry|downregulation of nematode entry into dormancy|inhibition of dauer entry|down-regulation of nematode entry into dormancy|down regulation of nematode entry into dormancy hbye 2017-02-06T15:34:11Z biological_process owl:Class GO:0071475 biolink:NamedThing cellular hyperosmotic salinity response Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl cellular response to hyperosmotic salt stress mah 2009-12-18T11:52:06Z biological_process owl:Class GO:0097711 biolink:NamedThing ciliary basal body-plasma membrane docking The docking of a cytosolic centriole/basal body to the plasma membrane via the ciliary transition fibers. In some species this may happen via an intermediate step, by first docking to the ciliary vesicle via the ciliary transition fibers. The basal body-ciliary vesicle then relocates to the plasma membrane, followed by the ciliary vesicle fusing with the plasma membrane, effectively attaching the basal body to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl anchoring of the basal body to the plasma membrane|ciliary basal body docking Reactome:R-HSA-5620912.1 Basal bodies in jawed vertebrates appear to first attach to a ciliary vesicle. It is unclear how specific this is to jawed vertebrates or if other organisms also employ this sequence. Some species like Giardia intestinalis do not relocate their basal bodies to the plasma membrane, but have their axonemes extend through the cytosol to then protrude out of the cell to form flagella. pr 2016-08-05T16:12:33Z biological_process owl:Class GO:0048654 biolink:NamedThing anther morphogenesis The process in which the anatomical structures of the anther are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097227 biolink:NamedThing sperm annulus The ring-like, filamentous structure located at the distal end of the midpiece of the sperm flagellum; the annulus is thought to form a diffusion barrier between the midpiece and the principal piece and serve as a stabilizing structure for tail rigidity. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:26:17Z cellular_component owl:Class GO:0036126 biolink:NamedThing sperm flagellum A microtubule-based flagellum (or cilium) that is part of a sperm, a mature male germ cell that develops from a spermatid. tmpzr1t_l9r_go_relaxed.owl sperm cilium|sperm tail Note that cilia and eukaryotic flagella are deemed to be equivalent. In this case community usage is always 'flagellum', hence the primary term name, but the cilium parentage is deliberate. bf 2012-02-28T02:39:00Z cellular_component owl:Class GO:0043226 biolink:NamedThing organelle Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1539965131|Wikipedia:Organelle cellular_component owl:Class GO:0120140 biolink:NamedThing negative regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T16:32:59Z biological_process owl:Class GO:0071009 biolink:NamedThing U4atac/U6atac x U5 tri-snRNP complex A spliceosomal snRNP complex that is formed by the association of the U4atac/U6atac and U5 snRNPs. tmpzr1t_l9r_go_relaxed.owl U4atac/U6atac.U5 snRNP complex mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005682 biolink:NamedThing U5 snRNP A ribonucleoprotein complex that contains small nuclear RNA U5, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U5 snRNP, most of which remain associated with the U5 snRNA both while the U5 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U5 cellular_component owl:Class GO:0043475 biolink:NamedThing pigment metabolic process involved in pigment accumulation The chemical reactions and pathways involving a pigment, any general or particular coloring matter in living organisms, as part of the accumulation of pigment. tmpzr1t_l9r_go_relaxed.owl pigment metabolism during pigment accumulation|pigment metabolic process during pigment accumulation biological_process owl:Class GO:0032211 biolink:NamedThing negative regulation of telomere maintenance via telomerase Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of telomeric repeats by telomerase. tmpzr1t_l9r_go_relaxed.owl down-regulation of telomere maintenance via telomerase activity|downregulation of telomere maintenance via telomerase activity|down regulation of telomere maintenance via telomerase activity|inhibition of telomere maintenance via telomerase biological_process owl:Class GO:0003338 biolink:NamedThing metanephros morphogenesis The process in which the anatomical structures of the metanephros are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-24T09:32:09Z biological_process owl:Class GO:0019081 biolink:NamedThing viral translation A process by which viral mRNA is translated into viral protein, using the host cellular machinery. tmpzr1t_l9r_go_relaxed.owl viral protein synthesis|viral protein biosynthetic process|viral protein biosynthesis|viral protein anabolism|viral protein formation biological_process owl:Class GO:0002461 biolink:NamedThing tolerance induction dependent upon immune response Tolerance induction dependent upon an immune response, typically a response by a mature T or B cell in the periphery resulting tolerance towards an antigen via induction of anergy, cellular deletion, or regulatory T cell activation. tmpzr1t_l9r_go_relaxed.owl immune response-dependent tolerance induction biological_process owl:Class GO:0060012 biolink:NamedThing synaptic transmission, glycinergic The vesicular release of glycine from a presynapse, across a chemical synapse, the subsequent activation of glycine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl glycinergic synaptic transmission biological_process owl:Class GO:0045323 biolink:NamedThing interleukin-1 receptor complex A protein complex that binds interleukin-1; comprises an alpha and a beta subunit. tmpzr1t_l9r_go_relaxed.owl IL-1 receptor complex cellular_component owl:Class GO:0071022 biolink:NamedThing U12-type post-spliceosomal complex A spliceosomal complex that is formed following the second splicing event and contains the spliced product, the excised intron, and three snRNPs, U5, U12 and U6atac. tmpzr1t_l9r_go_relaxed.owl AT-AC post-spliceosomal complex|yeast U12-type spliceosomal complex A2-3|minor post-spliceosomal complex|mammalian U12-type spliceosomal complex C2 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0005691 biolink:NamedThing U6atac snRNP A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl snRNP U6atac cellular_component owl:Class GO:0005251 biolink:NamedThing delayed rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by a delayed rectifying voltage-gated channel. A delayed rectifying current-voltage relation is one where channel activation kinetics are time-dependent, and inactivation is slow. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5577237|Reactome:R-HSA-5577050 molecular_function owl:Class GO:0045278 biolink:NamedThing plasma membrane respiratory chain complex IV A part of the respiratory chain located in the plasma membrane, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2). Examples of this component are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl cytochrome c oxidase complex|respiratory chain complex IV GO:0045288 cellular_component owl:Class GO:0070826 biolink:NamedThing paraferritin complex A cytoplasmic protein complex that contains integrin, mobilferrin and a flavin monooxygenase, is capable of reducing Fe(III) to Fe(II) utilizing NADPH, and is involved in iron transport. Fe(II) is required in the cell as the substrate for ferrochelatase in the synthesis of heme. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-23T03:05:08Z cellular_component owl:Class GO:1902160 biolink:NamedThing negative regulation of cyclic nucleotide-gated ion channel activity Any process that stops, prevents or reduces the frequency, rate or extent of cyclic nucleotide-gated ion channel activity. tmpzr1t_l9r_go_relaxed.owl inhibition of cyclic nucleotide-gated ion channel activity|downregulation of cyclic nucleotide-gated ion channel activity|downregulation of cyclic nucleotide gated ion channel activity|downregulation of cyclic nucleotide activated ion channel activity|negative regulation of cyclic nucleotide-activated ion channel activity|inhibition of cyclic nucleotide-activated ion channel activity|down-regulation of cyclic nucleotide activated ion channel activity|down-regulation of cyclic nucleotide-gated ion channel activity|downregulation of cyclic nucleotide-activated ion channel activity|down regulation of cyclic nucleotide-gated ion channel activity|inhibition of cyclic nucleotide activated ion channel activity|inhibition of cyclic nucleotide gated ion channel activity|down regulation of cyclic nucleotide activated ion channel activity|negative regulation of cyclic nucleotide activated ion channel activity|down regulation of cyclic nucleotide-activated ion channel activity|down-regulation of cyclic nucleotide gated ion channel activity|down regulation of cyclic nucleotide gated ion channel activity|down-regulation of cyclic nucleotide-activated ion channel activity|negative regulation of cyclic nucleotide gated ion channel activity sl 2013-05-21T19:24:35Z biological_process owl:Class GO:0035882 biolink:NamedThing defecation rhythm The rhythmic process of defecation that consists of an intestinal oscillator which regulates calcium waves. These waves in turn control a stereotypical, three-part pattern of muscle contractions. In some organisms, defecation can recur with a regularity more frequent than every 24 hours. For example, in a well-fed Caenorhabditis elegans, the defecation motor program occurs approximately every 45 seconds, and is temperature- and touch-compensated. tmpzr1t_l9r_go_relaxed.owl DMP|defecation cycle|defecation behavior|defecation motor program bf 2011-06-06T11:36:35Z biological_process owl:Class GO:0002087 biolink:NamedThing regulation of respiratory gaseous exchange by nervous system process A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates. tmpzr1t_l9r_go_relaxed.owl neurological control of breathing|regulation of respiratory gaseous exchange by neurological system process biological_process owl:Class GO:0045880 biolink:NamedThing positive regulation of smoothened signaling pathway Any process that activates or increases the frequency, rate or extent of smoothened signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of hedgehog signaling pathway|stimulation of smoothened signaling pathway|positive regulation of smoothened signalling pathway|up-regulation of smoothened signaling pathway|positive regulation of smoothened receptor activity by patched|upregulation of smoothened signaling pathway|positive regulation of smoothened by patched|positive regulation of hh signaling pathway|up regulation of smoothened signaling pathway|activation of smoothened signaling pathway GO:0045878 biological_process owl:Class GO:0060939 biolink:NamedThing epicardium-derived cardiac fibroblast cell development The process whose specific outcome is the progression of an epicardial-derived cardiac fibroblast over time, from its formation to the mature state. A epicardial-derived cardiac fibroblast is a connective tissue cell of the heart that arises from the epicardium and secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:29:19Z biological_process owl:Class GO:0046599 biolink:NamedThing regulation of centriole replication Any process that modulates the frequency, rate or extent of the formation of a daughter centriole of an existing centriole. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902319 biolink:NamedThing DNA strand elongation involved in nuclear cell cycle DNA replication Any DNA strand elongation that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA strand elongation involved in DNA replication involved in S-phase|DNA strand elongation involved in DNA replication involved in S phase|DNA strand elongation involved in DNA replication during S phase jl 2013-07-23T14:00:41Z biological_process owl:Class GO:1990695 biolink:NamedThing intrinsic component of Golgi trans cisterna membrane The component of the Golgi trans cisterna membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic component of trans-Golgi cisterna membrane bhm 2015-03-12T10:36:02Z cellular_component owl:Class GO:0048297 biolink:NamedThing negative regulation of isotype switching to IgA isotypes Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching to IgA isotypes. tmpzr1t_l9r_go_relaxed.owl down-regulation of isotype switching to IgA isotypes|downregulation of isotype switching to IgA isotypes|negative regulation of class switch recombination to IgA isotypes|inhibition of isotype switching to IgA isotypes|negative regulation of class switching to IgA isotypes|negative regulation of isotype switch recombination to IgA isotypes|down regulation of isotype switching to IgA isotypes biological_process owl:Class GO:2000546 biolink:NamedThing positive regulation of endothelial cell chemotaxis to fibroblast growth factor Any process that activates or increases the frequency, rate or extent of endothelial cell chemotaxis to fibroblast growth factor. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T07:17:27Z biological_process owl:Class GO:0034162 biolink:NamedThing toll-like receptor 9 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 9. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 9 signalling pathway|TLR9 signaling pathway biological_process owl:Class GO:0048910 biolink:NamedThing afferent axon development in anterior lateral line nerve The process whose specific outcome is the progression of an afferent axon in the anterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010995 biolink:NamedThing free ubiquitin chain depolymerization The process in which free ubiquitin chains, compounds composed of a large number of ubiquitin monomers, are broken down. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-03T11:45:42Z biological_process owl:Class GO:0048715 biolink:NamedThing negative regulation of oligodendrocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of oligodendrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of oligodendrocyte differentiation|down-regulation of oligodendrocyte differentiation|down regulation of oligodendrocyte differentiation|downregulation of oligodendrocyte differentiation biological_process owl:Class GO:0004979 biolink:NamedThing beta-endorphin receptor activity Combining with beta-endorphin, and transmitting the signal across the membrane by activating an associated G-protein. Beta-endorphin is a peptide, 31 amino acids long, resulting from processing of the precursor proopiomelanocortin (POMC). tmpzr1t_l9r_go_relaxed.owl mu-opioid receptor activity molecular_function owl:Class GO:1900734 biolink:NamedThing positive regulation of polyketide biosynthetic process Any process that activates or increases the frequency, rate or extent of polyketide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of polyketide formation|positive regulation of polyketide synthesis|up regulation of polyketide biosynthesis|activation of polyketide anabolism|up-regulation of polyketide formation|activation of polyketide synthesis|upregulation of polyketide synthesis|up regulation of polyketide anabolism|up-regulation of polyketide biosynthetic process|up-regulation of polyketide synthesis|positive regulation of polyketide formation|activation of polyketide biosynthesis|positive regulation of polyketide biosynthesis|upregulation of polyketide anabolism|upregulation of polyketide biosynthesis|upregulation of polyketide biosynthetic process|positive regulation of polyketide anabolism|up-regulation of polyketide anabolism|up-regulation of polyketide biosynthesis|up regulation of polyketide biosynthetic process|activation of polyketide biosynthetic process|up regulation of polyketide formation|up regulation of polyketide synthesis|upregulation of polyketide formation di 2012-05-26T01:30:10Z biological_process owl:Class GO:0006182 biolink:NamedThing cGMP biosynthetic process The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate. tmpzr1t_l9r_go_relaxed.owl cGMP biosynthesis|cGMP anabolism|cGMP formation|cGMP synthesis biological_process owl:Class GO:0000142 biolink:NamedThing cellular bud neck contractile ring A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane at the mother-bud neck in mitotic cells that divide by budding in preparation for completing cytokinesis. An example of this structure is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl neck ring cellular_component owl:Class GO:0062246 biolink:NamedThing exocytic vesicle lumen The volume enclosed by an exocytic vesicle. tmpzr1t_l9r_go_relaxed.owl dph 2020-04-27T12:10:09Z cellular_component owl:Class GO:0072244 biolink:NamedThing metanephric glomerular epithelium development The process whose specific outcome is the progression of the metanephric glomerular epithelium over time, from its formation to the mature structure. The metanephric glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus in the metanephros. The metanephric glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T03:38:47Z biological_process owl:Class GO:0039625 biolink:NamedThing viral inner capsid The inner layer of a double or triple concentric icosahedral capsid. Inner capsids are part of reoviridae and cystoviridae virions. tmpzr1t_l9r_go_relaxed.owl inner capsid bf 2012-07-18T04:05:35Z cellular_component owl:Class GO:0070378 biolink:NamedThing positive regulation of ERK5 cascade Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK5 cascade. tmpzr1t_l9r_go_relaxed.owl up regulation of BMK cascade|stimulation of BMK cascade|upregulation of BMK cascade|positive regulation of ERK5 signaling pathway|positive regulation of BMK signalling pathway|positive regulation of BMK1 cascade|up-regulation of BMK cascade|positive regulation of BMK cascade|positive regulation of MAPK7 cascade|positive regulation of BMK signaling pathway|activation of BMK cascade biological_process owl:Class GO:0021554 biolink:NamedThing optic nerve development The process whose specific outcome is the progression of the optic nerve over time, from its formation to the mature structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain. tmpzr1t_l9r_go_relaxed.owl cranial nerve II development|cranial nerve 2 development|CN II development biological_process owl:Class GO:1901585 biolink:NamedThing regulation of acid-sensing ion channel activity Any process that modulates the frequency, rate or extent of acid-sensing ion channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of ASIC activity jl 2012-11-07T13:37:24Z biological_process owl:Class GO:0048929 biolink:NamedThing efferent axon development in posterior lateral line nerve The process whose specific outcome is the progression of an efferent axon in the posterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043594 biolink:NamedThing outer endospore membrane The outer membrane around a bacterial endospore, located between the endospore cortex and endospore coat. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043591 biolink:NamedThing endospore external encapsulating structure The structures that lie outside the inner membrane and surround the entire endospore; consists of a peptidoglycan-containing inner layer (the endospore cortex) surrounded by a multilayered proteinaceous coat. An exosporium may be present as an extreme outer layer. tmpzr1t_l9r_go_relaxed.owl endospore wall|spore wall|peptidoglycan-based spore wall GO:0055030 cellular_component owl:Class GO:1905896 biolink:NamedThing positive regulation of cellular response to tunicamycin Any process that activates or increases the frequency, rate or extent of cellular response to tunicamycin. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular response to tunicamycin|activation of cellular response to tunicamycin|up-regulation of cellular response to tunicamycin|upregulation of cellular response to tunicamycin bc 2017-02-01T11:36:51Z biological_process owl:Class GO:1904577 biolink:NamedThing cellular response to tunicamycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tunicamycin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T18:01:58Z biological_process owl:Class GO:0060996 biolink:NamedThing dendritic spine development The process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:06:33Z biological_process owl:Class GO:0021794 biolink:NamedThing thalamus development The process in which the thalamus changes over time, from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075524 biolink:NamedThing ribosomal skipping A translation process in which a specific viral peptide prevents the ribosome from covalently linking a new inserted amino acid, and lets it continue translation, thereby cleaving the nascent protein while allowing translation to continue. tmpzr1t_l9r_go_relaxed.owl VZ:914 This term is intended to annotate gene products involved in the process of ribosomal skipping, not viral proteins produced by this translation process. jl 2011-08-03T03:19:37Z biological_process owl:Class GO:1990986 biolink:NamedThing DNA recombinase disassembly The disaggregation of a DNA recombinase complex into its constituent strand exchange proteins (recombinases). tmpzr1t_l9r_go_relaxed.owl Rad51 nucleoprotein filament disassembly pg 2016-11-18T13:13:56Z biological_process owl:Class GO:0019244 biolink:NamedThing lactate biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of lactate from other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl lactate formation from pyruvate|lactate anabolism from pyruvate|lactate synthesis from pyruvate|pyruvate fermentation to lactate Reactome:R-HSA-71849.1 biological_process owl:Class GO:0030589 biolink:NamedThing pseudocleavage involved in syncytial blastoderm formation Formation of furrows in the cytoplasm between nuclei during cell cycles in embryos that contribute to the formation of the syncytial blastoderm. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl pseudocleavage during syncytial blastoderm formation biological_process owl:Class GO:0120151 biolink:NamedThing positive regulation of mitotic actomyosin contractile ring disassembly Any process that activates or increases the frequency, rate or extent of mitotic actomyosin contractile ring disassembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitotic actomyosin ring disassembly|positive regulation of mitotic contractile actomyosin ring disassembly|positive regulation of mitotic cytokinetic ring disassembly|positive regulation of mitotic CAR disassembly|positive regulation of mitotic constriction ring disassembly krc 2018-04-24T15:06:51Z biological_process owl:Class GO:0032696 biolink:NamedThing negative regulation of interleukin-13 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-13 production. tmpzr1t_l9r_go_relaxed.owl downregulation of interleukin-13 production|inhibition of interleukin-13 production|down-regulation of interleukin-13 production|negative regulation of IL-13 production|negative regulation of interleukin-13 secretion|down regulation of interleukin-13 production|negative regulation of interleukin-13 biosynthetic process GO:2000666|GO:0045367 biological_process owl:Class GO:0002347 biolink:NamedThing response to tumor cell Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a tumor cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000745 biolink:NamedThing nuclear migration involved in conjugation with mutual genetic exchange The net movement of nuclei towards one another, leading to the bilateral transfer of genetic material in organisms undergoing conjugation without cellular fusion. tmpzr1t_l9r_go_relaxed.owl nuclear migration involved in conjugation without cellular fusion|nuclear exchange during conjugation without cellular fusion biological_process owl:Class GO:0000748 biolink:NamedThing conjugation with mutual genetic exchange A conjugation process that results in the mutual exchange and union of only genetic information between compatible mating types. Conjugation without cellular fusion requires direct cellular contact between the organisms without plasma membrane fusion. The organisms involved in conjugation without cellular fusion separate after nuclear exchange. tmpzr1t_l9r_go_relaxed.owl conjugation without cellular fusion biological_process owl:Class GO:0004735 biolink:NamedThing pyrroline-5-carboxylate reductase activity Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl L-proline oxidase activity|NADPH-L-delta1-pyrroline carboxylic acid reductase activity|P5CR activity|1-pyrroline-5-carboxylate reductase activity|L-proline-NAD(P)+ 5-oxidoreductase activity|L-proline:NAD(P)+ 5-oxidoreductase activity MetaCyc:PYRROLINECARBREDUCT-RXN|Reactome:R-HSA-70664|EC:1.5.1.2|Reactome:R-HSA-6783939|RHEA:14109|Reactome:R-HSA-6783955 molecular_function owl:Class GO:0061056 biolink:NamedThing sclerotome development The progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-02T12:12:40Z biological_process owl:Class GO:0090391 biolink:NamedThing granum assembly A process that is carried out at the cellular level which results in the assembly of a granum. A granum is a distinct stack of lamellae seen within chloroplasts. tmpzr1t_l9r_go_relaxed.owl grana formation tb 2010-12-08T04:25:46Z biological_process owl:Class GO:0004921 biolink:NamedThing interleukin-11 receptor activity Combining with interleukin-11 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-11R|gp130|IL-11 receptor activity molecular_function owl:Class GO:0038154 biolink:NamedThing interleukin-11-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-11 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-11-mediated signalling pathway|IL-11-mediated signaling pathway bf 2012-05-11T11:48:37Z biological_process owl:Class GO:0015135 biolink:NamedThing glucuronate transmembrane transporter activity Enables the transfer of glucuronate from one side of a membrane to the other. Glucuronate is the uronic acid formally derived from glucose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015738 biolink:NamedThing glucuronate transmembrane transport The process in which glucuronate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl glucuronate transport biological_process owl:Class GO:0061118 biolink:NamedThing regulation of positive chemotaxis to cAMP Any process that modulates the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T07:47:47Z biological_process owl:Class GO:0043327 biolink:NamedThing chemotaxis to cAMP The directed movement of a motile cell or organism in response to the presence of 3',5'-cAMP. tmpzr1t_l9r_go_relaxed.owl chemotaxis to adenosine 3',5'-cyclophosphate|chemotaxis to 3',5'-cAMP|chemotaxis to cyclic AMP|chemotaxis to 3',5' cAMP biological_process owl:Class GO:0072283 biolink:NamedThing metanephric renal vesicle morphogenesis The process in which the anatomical structures of the metanephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:28:00Z biological_process owl:Class GO:1990922 biolink:NamedThing hepatic stellate cell proliferation The multiplication or reproduction of hepatic stellate cells, resulting in the expansion of a hepatic stellate cell population. Hepatic stellate cells are found in the perisinusoidal space of the liver, and are capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components. This cell type comprises approximately 8-15% of total cells in the liver. tmpzr1t_l9r_go_relaxed.owl Ito cell proliferation|hepatic perisinusoidal cell proliferation|perisinusoidal cell proliferation sl 2016-01-13T23:12:57Z biological_process owl:Class GO:0070945 biolink:NamedThing neutrophil-mediated killing of gram-negative bacterium The directed killing of a gram-negative bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated killing of gram-negative bacterium mah 2009-10-01T01:59:12Z biological_process owl:Class GO:0046854 biolink:NamedThing phosphatidylinositol phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol phosphorylation|PIP biosynthesis|phosphatidylinositol phosphate biosynthesis|phosphatidylinositol phosphate phosphorylation|phosphoinositide phosphorylation|PtdInsP biosynthesis https://github.com/geneontology/go-ontology/issues/14184 GO:0046837 biological_process owl:Class GO:0072108 biolink:NamedThing positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis Any process that increases the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T02:45:57Z biological_process owl:Class GO:0044226 biolink:NamedThing basal pole of neuron Portion of a neuron cell soma closest to the point where the basilar dendrite emerges. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1186862860 jl 2009-11-13T04:32:17Z cellular_component owl:Class GO:2000540 biolink:NamedThing negative regulation of protein geranylgeranylation Any process that stops, prevents or reduces the frequency, rate or extent of protein geranylgeranylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of C-terminal protein geranylgeranylation|negative regulation of protein amino acid geranylgeranylation tb 2011-03-29T06:23:11Z biological_process owl:Class GO:0034101 biolink:NamedThing erythrocyte homeostasis Any process of regulating the production and elimination of erythrocytes within an organism. tmpzr1t_l9r_go_relaxed.owl RBC homeostasis|red blood cell homeostasis biological_process owl:Class GO:0044351 biolink:NamedThing macropinocytosis An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size. tmpzr1t_l9r_go_relaxed.owl clathrin-independent pinocytosis|single-organism macropinocytosis jl 2011-08-11T10:26:42Z GO:1902538 biological_process owl:Class GO:0072579 biolink:NamedThing glycine receptor clustering The receptor clustering process in which glycine receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-03T01:47:40Z biological_process owl:Class GO:1900970 biolink:NamedThing positive regulation of sarcinapterin metabolic process Any process that activates or increases the frequency, rate or extent of sarcinapterin metabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of sarcinapterin metabolic process|activation of sarcinapterin metabolism|up-regulation of sarcinapterin metabolism|up-regulation of sarcinapterin metabolic process|up regulation of sarcinapterin metabolism|upregulation of sarcinapterin metabolism|activation of sarcinapterin metabolic process|upregulation of sarcinapterin metabolic process|positive regulation of sarcinapterin metabolism tt 2012-06-14T03:58:43Z biological_process owl:Class GO:0061426 biolink:NamedThing positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of sulfite transport. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-02T01:21:46Z biological_process owl:Class GO:0032590 biolink:NamedThing dendrite membrane The portion of the plasma membrane surrounding a dendrite. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005652 biolink:NamedThing nuclear lamina The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a cell nucleus, composed of lamin filaments. The polypeptides of the lamina are thought to be concerned in the dissolution of the nuclear envelope and its re-formation during mitosis. The lamina is composed of lamin A and lamin C filaments cross-linked into an orthogonal lattice, which is attached via lamin B to the inner nuclear membrane through interactions with a lamin B receptor, an IFAP, in the membrane. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nuclear_lamina|NIF_Subcellular:sao1455996588 cellular_component owl:Class GO:0034399 biolink:NamedThing nuclear periphery The portion of the nuclear lumen proximal to the inner nuclear membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000353 biolink:NamedThing positive regulation of endothelial cell apoptotic process Any process that activates or increases the frequency, rate or extent of endothelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of endothelial cell programmed cell death by apoptosis|positive regulation of programmed cell death of endothelial cells by apoptosis|positive regulation of apoptosis of endothelial cells|positive regulation of programmed cell death, endothelial cells|positive regulation of endothelial cell apoptosis|positive regulation of killing of endothelial cells mah 2011-02-03T10:43:23Z biological_process owl:Class GO:2001265 biolink:NamedThing positive regulation of C-C chemokine binding Any process that activates or increases the frequency, rate or extent of C-C chemokine binding. tmpzr1t_l9r_go_relaxed.owl yaf 2011-12-09T01:14:07Z biological_process owl:Class GO:1901634 biolink:NamedThing positive regulation of synaptic vesicle membrane organization Any process that activates or increases the frequency, rate or extent of synaptic vesicle membrane organization. tmpzr1t_l9r_go_relaxed.owl up-regulation of synaptic vesicle membrane organization and biogenesis|up-regulation of synaptic vesicle membrane organisation|activation of synaptic vesicle membrane organisation|up regulation of synaptic vesicle membrane organisation|positive regulation of synaptic vesicle membrane organisation|upregulation of synaptic vesicle membrane organization|up regulation of synaptic vesicle membrane organization|upregulation of SLMV biogenesis|activation of synaptic vesicle membrane organization and biogenesis|upregulation of synaptic vesicle membrane organisation|up regulation of synaptic vesicle membrane organization and biogenesis|upregulation of synaptic vesicle membrane organization and biogenesis|up regulation of SLMV biogenesis|positive regulation of synaptic vesicle membrane organization and biogenesis|up-regulation of synaptic vesicle membrane organization|activation of SLMV biogenesis|up-regulation of SLMV biogenesis|positive regulation of SLMV biogenesis|activation of synaptic vesicle membrane organization ans 2012-11-15T11:40:59Z biological_process owl:Class GO:0048499 biolink:NamedThing synaptic vesicle membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the membrane surrounding a synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle membrane organization and biogenesis|SLMV biogenesis|synaptic vesicle membrane organisation biological_process owl:Class GO:0043619 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to oxidative stress Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072027 biolink:NamedThing connecting tubule development The process whose specific outcome is the progression of the connecting tubule over time, from its formation to the mature structure. The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct. tmpzr1t_l9r_go_relaxed.owl connecting duct development mah 2010-01-25T02:42:05Z biological_process owl:Class GO:0060461 biolink:NamedThing right lung morphogenesis The process in which anatomical structures of the right lung are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060458 biolink:NamedThing right lung development The biological process whose specific outcome is the progression of a right lung from an initial condition to its mature state. This process begins with the formation of the right lung and ends with the mature structure. The right lung is the lung which is on the right side of the anterior posterior axis looking from a dorsal to ventral aspect. tmpzr1t_l9r_go_relaxed.owl right pulmonary development biological_process owl:Class GO:0043669 biolink:NamedThing ectexine The outer part of the exine, which stains positively with basic fuchsin in optical microscopy and has higher electron density in conventionally prepared TEM sections. tmpzr1t_l9r_go_relaxed.owl Note that ectexine is distinguished on staining properties; compare with 'sexine ; GO:0043673'. See also 'endexine ; GO:0043671'. cellular_component owl:Class GO:0010479 biolink:NamedThing stele development The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015133 biolink:NamedThing uronic acid transmembrane transporter activity Enables the transfer of uronic acid from one side of a membrane to the other. Uronic acids are any monocarboxylic acid formally derived by oxidizing to a carboxyl group the terminal hydroxymethylene group of either an aldose with four or more carbon atoms in the molecule, or of any glycoside derived from such an aldose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021681 biolink:NamedThing cerebellar granular layer development The process whose specific outcome is the progression of the cerebellar granule layer over time, from its formation to the mature structure. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060088 biolink:NamedThing auditory receptor cell stereocilium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells. tmpzr1t_l9r_go_relaxed.owl auditory receptor cell stereocilium organisation|auditory receptor cell stereocilium organization and biogenesis biological_process owl:Class GO:0002093 biolink:NamedThing auditory receptor cell morphogenesis Any process that alters the size or shape of an auditory receptor cell. tmpzr1t_l9r_go_relaxed.owl hair cell morphogenesis biological_process owl:Class GO:0061554 biolink:NamedThing ganglion formation The process that gives rise to ganglion. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl ganglia formation dph 2013-07-10T08:51:50Z biological_process owl:Class GO:0015777 biolink:NamedThing teichoic acid transport The directed movement of teichoic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Teichoic acid is any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006614 biolink:NamedThing SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. tmpzr1t_l9r_go_relaxed.owl ER translocation|SRP-dependent cotranslational protein-membrane targeting|SRP-dependent cotranslational membrane targeting biological_process owl:Class GO:0048734 biolink:NamedThing proboscis morphogenesis The process in which the anatomical structures of the proboscis are generated and organized. The proboscis is the trunk-like extension of the mouthparts on the adult head. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003317 biolink:NamedThing cardioblast cell midline fusion The attachment of cardiac progenitor cells to one another that contributes to the formation of the heart rudiment. tmpzr1t_l9r_go_relaxed.owl cardiac progenitor cell midline fusion dph 2009-10-27T09:08:57Z biological_process owl:Class GO:0003315 biolink:NamedThing heart rudiment formation The developmental process pertaining to the initial formation of the heart rudiment. tmpzr1t_l9r_go_relaxed.owl heart cone formation dph 2009-10-27T08:43:37Z biological_process owl:Class GO:0042774 biolink:NamedThing plasma membrane ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904331 biolink:NamedThing regulation of error-prone translesion synthesis Any process that modulates the frequency, rate or extent of error-prone translesion synthesis. tmpzr1t_l9r_go_relaxed.owl regulation of mutagenic postreplication DNA repair|regulation of mutagenic PRR|regulation of error-prone postreplication DNA repair kmv 2015-06-11T16:24:47Z biological_process owl:Class GO:0071927 biolink:NamedThing octopamine signaling pathway The series of molecular signals generated as a consequence of octopamine binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl octopamine signalling pathway mah 2010-09-28T01:18:57Z biological_process owl:Class GO:1905111 biolink:NamedThing positive regulation of pulmonary blood vessel remodeling Any process that activates or increases the frequency, rate or extent of pulmonary blood vessel remodeling. tmpzr1t_l9r_go_relaxed.owl activation of pulmonary blood vessel remodeling|up regulation of pulmonary blood vessel remodeling|upregulation of pulmonary blood vessel remodeling|up-regulation of pulmonary blood vessel remodeling bc 2016-04-06T13:07:42Z biological_process owl:Class GO:0101010 biolink:NamedThing pulmonary blood vessel remodeling The reorganization or renovation of existing pulmonary blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004308 biolink:NamedThing exo-alpha-sialidase activity Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. tmpzr1t_l9r_go_relaxed.owl alpha-neuraminidase activity|acetylneuraminidase activity|sialidase activity|neuraminidase activity|acetylneuraminyl hydrolase activity|N-acylneuraminate glycohydrolase activity MetaCyc:3.2.1.18-RXN|Reactome:R-HSA-1605723|Reactome:R-HSA-1605768|Reactome:R-HSA-4341669|EC:3.2.1.18|Reactome:R-HSA-168870|Reactome:R-HSA-4085029|Reactome:R-HSA-4084999|Reactome:R-HSA-9638120|Reactome:R-HSA-4084994|Reactome:R-HSA-1605724 molecular_function owl:Class GO:0010879 biolink:NamedThing cholesterol transport involved in cholesterol storage The directed movement of cholesterol into cells that is part of their accumulation and maintenance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010878 biolink:NamedThing cholesterol storage The accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl sequestration of cholesterol|cholesterol sequestration biological_process owl:Class GO:1902569 biolink:NamedThing negative regulation of activation of Janus kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of activation of JAK (Janus Activated Kinase) kinase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of tyrosine phosphorylation of JAK1 protein|down regulation of tyrosine phosphorylation of JAK1 protein|negative regulation of tyrosine phosphorylation of JAK2 protein|down-regulation of activation of JAK1 kinase activity|downregulation of activation of JAK1 kinase activity|down-regulation of activation of JAK2 protein|negative regulation of tyrosine phosphorylation of JAK1 protein|inhibition of activation of JAK2 kinase activity|downregulation of tyrosine phosphorylation of JAK1 protein|inhibition of activation of JAK2 protein|downregulation of activation of JAK2 kinase activity|negative regulation of activation of JAK1 protein|inhibition of tyrosine phosphorylation of JAK2 protein|down regulation of activation of JAK2 kinase activity|inhibition of activation of JAK1 protein|downregulation of activation of JAK1 protein|down regulation of activation of JAK1 protein|down-regulation of tyrosine phosphorylation of JAK2 protein|down-regulation of activation of JAK1 protein|down regulation of activation of JAK2 protein|down-regulation of activation of JAK2 kinase activity|down regulation of activation of JAK1 kinase activity|negative regulation of activation of JAK2 protein|down regulation of tyrosine phosphorylation of JAK2 protein|negative regulation of activation of JAK2 kinase activity|downregulation of tyrosine phosphorylation of JAK2 protein|inhibition of activation of JAK1 kinase activity|inhibition of tyrosine phosphorylation of JAK1 protein ecu 2013-12-10T16:13:20Z biological_process owl:Class GO:2000337 biolink:NamedThing positive regulation of endothelial microparticle formation Any process that activates or increases the frequency, rate or extent of endothelial microparticle formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of endothelial microparticle generation|positive regulation of endothelial microparticle release mah 2011-01-31T11:20:38Z biological_process owl:Class GO:0001739 biolink:NamedThing sex chromatin Chromatin that is part of a sex chromosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036464 biolink:NamedThing cytoplasmic ribonucleoprotein granule A ribonucleoprotein granule located in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl Staufen granule bf 2014-06-18T09:44:44Z cellular_component owl:Class GO:0042921 biolink:NamedThing glucocorticoid receptor signaling pathway Any series of molecular signals generated as a consequence of a glucocorticoid binding to its receptor. tmpzr1t_l9r_go_relaxed.owl glucocorticoid receptor signalling pathway biological_process owl:Class GO:0042541 biolink:NamedThing hemoglobin biosynthetic process The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. tmpzr1t_l9r_go_relaxed.owl hemoglobin anabolism|haemoglobin biosynthesis|hemoglobin biosynthesis|hemoglobin formation|hemoglobin synthesis|haemoglobin biosynthetic process biological_process owl:Class GO:0048270 biolink:NamedThing methionine adenosyltransferase regulator activity Binds to and modulates the activity of methionine adenosyltransferase. tmpzr1t_l9r_go_relaxed.owl MAT regulator activity See also the molecular function term 'methionine adenosyltransferase activity ; GO:0004478'. molecular_function owl:Class GO:0004478 biolink:NamedThing methionine adenosyltransferase activity Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl adenosylmethionine synthetase activity|AdoMet synthetase activity|S-adenosylmethionine synthase activity|ATP-methionine adenosyltransferase activity|ATP:L-methionine S-adenosyltransferase activity|S-adenosyl-L-methionine synthetase activity|S-adenosylmethionine synthetase activity|methionine-activating enzyme|methionine S-adenosyltransferase activity RHEA:21080|Reactome:R-HSA-5603114|EC:2.5.1.6|Reactome:R-HSA-5603087|Reactome:R-HSA-174391|MetaCyc:S-ADENMETSYN-RXN molecular_function owl:Class GO:0008363 biolink:NamedThing larval chitin-based cuticle development Synthesis and deposition of a chitin-based larval cuticle. The insect larval cuticle is a secretion from epidermal cells that is shed at each molt. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl larval cuticle biosynthetic process|larval cuticle formation|larval cuticle anabolism|larval cuticle synthesis biological_process owl:Class GO:0039012 biolink:NamedThing pronephric sinus development The process whose specific outcome is the progression of the pronephric sinus over time, from its formation to the mature structure. The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:55:23Z biological_process owl:Class GO:2001194 biolink:NamedThing regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine Any process that modulates the frequency, rate or extent of lysine biosynthetic process via alpha-aminoadipate and saccharopine. tmpzr1t_l9r_go_relaxed.owl regulation of lysine biosynthesis via aminoadipic acid and saccharopine|regulation of lysine biosynthetic process via aminoadipic acid and saccharopine mcc 2011-11-03T07:57:11Z biological_process owl:Class GO:0051975 biolink:NamedThing lysine biosynthetic process via alpha-aminoadipate and saccharopine The chemical reactions and pathways resulting in the formation of lysine via the intermediates alpha-aminoadipic acid and saccharopine. This pathway is used by yeast and fungi to synthesize the essential amino acid L-lysine, and pathway intermediates are often incorporated into secondary metabolic processes. The pathway proceeds as follows: alpha-ketoglutarate is converted to homocitrate, which is metabolized to 3-carboxyhex-2-enedioate and then homoisocitrate. This is then decarboxylated to form alpha-ketoadipate, which is then converted to alpha-aminoadipate. This is then reduced to form alpha-aminoadipate 6-semialdehyde, which is metabolized to saccharopine and finally L-lysine. tmpzr1t_l9r_go_relaxed.owl lysine biosynthesis via aminoadipic acid and saccharopine|lysine biosynthetic process via aminoadipic acid and saccharopine MetaCyc:LYSINE-AMINOAD-PWY biological_process owl:Class GO:0035298 biolink:NamedThing regulation of Malpighian tubule size Ensuring that a Malpighian tubule is the correct length and diameter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098814 biolink:NamedThing spontaneous synaptic transmission The low level of synaptic transmission that occurs via spontaneous neurotransmitter release into the synaptic cleft in the absence of a presynaptic action potential. tmpzr1t_l9r_go_relaxed.owl basal synaptic transmission This is typically measured via detection of mini excitatory post-synaptic currents (mEPSCs). biological_process owl:Class GO:0001772 biolink:NamedThing immunological synapse An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction. tmpzr1t_l9r_go_relaxed.owl c-SMAC|supramolecular activation cluster Wikipedia:Immunological_synapse cellular_component owl:Class GO:1904126 biolink:NamedThing convergent extension involved in notochord morphogenesis Any convergent extension that is involved in notochord morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:12:57Z biological_process owl:Class GO:0140622 biolink:NamedThing ER-to-endosome phospholipid transfer complex Lipid transfer complex that is responsible for the non-vesicular transport of phospholipids, such as phosphatidylserine, from the endoplasmic reticulum to the endosome. It resides in the endosomal (acceptor) membrane and binds to specific lipids on the donor membrane at the ER-endosome contact site. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15338 pg 2021-03-10T11:27:24Z cellular_component owl:Class GO:0060929 biolink:NamedThing atrioventricular node cell fate commitment The commitment of cells to atrioventricular (AV) node cell fates and their capacity to differentiate into AV node cells. tmpzr1t_l9r_go_relaxed.owl AV node cell fate commitment dph 2009-09-29T12:01:24Z biological_process owl:Class GO:0060922 biolink:NamedThing atrioventricular node cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an atrioventricular (AV) node cell. AV node cells are pacemaker cells that are found in the atrioventricular node. tmpzr1t_l9r_go_relaxed.owl AV node cell differentiation dph 2009-09-29T11:07:06Z biological_process owl:Class GO:1904457 biolink:NamedThing positive regulation of neuronal action potential Any process that activates or increases the frequency, rate or extent of neuronal action potential. tmpzr1t_l9r_go_relaxed.owl up regulation of neuronal action potential|activation of generation of action potential|up-regulation of generation of action potential|up-regulation of neuronal action potential|activation of neuronal action potential|upregulation of neuronal action potential|positive regulation of generation of action potential|up regulation of generation of action potential|upregulation of generation of action potential sl 2015-07-09T18:02:46Z biological_process owl:Class GO:0072536 biolink:NamedThing interleukin-23 receptor complex A protein complex that binds interleukin-23 and that consists of, at a minimum, a dimeric interleukin and its two receptor subunits as well as optional additional kinase subunits. tmpzr1t_l9r_go_relaxed.owl IL-23 receptor complex mah 2011-01-14T02:51:14Z cellular_component owl:Class GO:0031110 biolink:NamedThing regulation of microtubule polymerization or depolymerization Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031109 biolink:NamedThing microtubule polymerization or depolymerization Assembly or disassembly of microtubules by the addition or removal of tubulin heterodimers from a microtubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045506 biolink:NamedThing interleukin-24 receptor activity Combining with interleukin-24 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-24R|IL-24 receptor activity molecular_function owl:Class GO:0045510 biolink:NamedThing interleukin-24 binding Binding to interleukin-24. tmpzr1t_l9r_go_relaxed.owl IL-24 binding molecular_function owl:Class GO:1990117 biolink:NamedThing B cell receptor apoptotic signaling pathway An extrinsic apoptotic signaling pathway initiated by the cross-linking of an antigen receptor on a B cell. tmpzr1t_l9r_go_relaxed.owl B cell receptor extrinsic apoptotic signaling pathway|extrinsic apoptotic signaling pathway via BCR|extrinsic apoptotic signaling pathway via B cell antigen receptor pr 2013-06-06T15:15:17Z biological_process owl:Class GO:1904502 biolink:NamedThing regulation of lipophagy Any process that modulates the frequency, rate or extent of lipophagy. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-24T11:37:12Z biological_process owl:Class GO:1990045 biolink:NamedThing sclerotium development The process whose specific outcome is the progression of the sclerotium over time, from its formation to the mature structure. A sclerotium is a mycelial resting body, resistant to adverse environmental conditions. tmpzr1t_l9r_go_relaxed.owl pr 2013-02-15T15:30:00Z biological_process owl:Class GO:0004924 biolink:NamedThing oncostatin-M receptor activity Combining with oncostatin-M and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005003 biolink:NamedThing ephrin receptor activity Combining with an ephrin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Eph receptor activity molecular_function owl:Class GO:0048013 biolink:NamedThing ephrin receptor signaling pathway The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin. tmpzr1t_l9r_go_relaxed.owl Eph receptor signaling pathway|Eph receptor signalling pathway biological_process owl:Class GO:0004963 biolink:NamedThing follicle-stimulating hormone receptor activity Combining with follicle-stimulating hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl FSH receptor activity|follicle stimulating hormone receptor activity molecular_function owl:Class GO:0110107 biolink:NamedThing regulation of imaginal disc-derived wing vein specification Any process that modulates the frequency, rate or extent of imaginal disc-derived wing vein specification. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-05T13:44:08Z biological_process owl:Class GO:0007474 biolink:NamedThing imaginal disc-derived wing vein specification The regionalization process in which the area of a imaginal disc-derived wing that will form a wing vein is specified. tmpzr1t_l9r_go_relaxed.owl wing vein specification biological_process owl:Class GO:0045660 biolink:NamedThing positive regulation of neutrophil differentiation Any process that activates or increases the frequency, rate or extent of neutrophil differentiation. tmpzr1t_l9r_go_relaxed.owl activation of neutrophil differentiation|upregulation of neutrophil differentiation|stimulation of neutrophil differentiation|up-regulation of neutrophil differentiation|up regulation of neutrophil differentiation biological_process owl:Class GO:0030223 biolink:NamedThing neutrophil differentiation The process in which a myeloid precursor cell acquires the specialized features of a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil cell differentiation|neutrophil granulocytopoiesis|neutrophil granulocyte differentiation biological_process owl:Class GO:0032203 biolink:NamedThing telomere formation via telomerase A cellular process that results in the formation of a telomere at a non-telomeric double-stranded DNA end that involves the activity of a telomerase enzyme. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905324 biolink:NamedThing telomere-telomerase complex assembly The aggregation, arrangement and bonding together of a set of components to form a telomere-telomerase complex. tmpzr1t_l9r_go_relaxed.owl telomere-telomerase complex formation mah 2016-07-18T10:38:22Z biological_process owl:Class GO:0035475 biolink:NamedThing angioblast cell migration involved in selective angioblast sprouting The directional migration of angioblast cells as part of selective angioblast sprouting, which results in angioblast segregation into arterial and venous populations. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:04:30Z biological_process owl:Class GO:0002191 biolink:NamedThing cap-dependent translational initiation The process where the cap structure, composed of a 7- methylguanosine (m7G) group and associated cap-binding proteins, located at the 5' end of an mRNA molecule, which serves as a molecular tag that marks the spot where the 40S ribosomal subunit, is recruited and will then scan in a 5' to 3' direction until an AUG codon is encountered in an appropriate sequence context to initiate mRNA translation. tmpzr1t_l9r_go_relaxed.owl hjd 2011-08-11T02:20:24Z biological_process owl:Class GO:2000075 biolink:NamedThing negative regulation of cytokinesis, site selection Any process that stops, prevents, or reduces the frequency, rate or extent of site selection that occurs as part of cytokinesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of site selection involved in cell cycle cytokinesis tb 2010-08-27T11:19:56Z biological_process owl:Class GO:0071481 biolink:NamedThing cellular response to X-ray Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz). tmpzr1t_l9r_go_relaxed.owl cellular response to X-ray radiation stimulus mah 2009-12-18T02:00:59Z biological_process owl:Class GO:0042665 biolink:NamedThing regulation of ectodermal cell fate specification Any process that mediates the specification of a cell into an ectoderm cell. tmpzr1t_l9r_go_relaxed.owl regulation of ectoderm cell fate specification biological_process owl:Class GO:0001715 biolink:NamedThing ectodermal cell fate specification The cell fate determination process that results in a cell becoming becomes capable of differentiating autonomously into an ectoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl ectoderm cell fate specification biological_process owl:Class GO:1903997 biolink:NamedThing positive regulation of non-membrane spanning protein tyrosine kinase activity Any process that activates or increases the frequency, rate or extent of non-membrane spanning protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl activation of Bruton's tyrosine kinase activity|positive regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|up regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|positive regulation of p60c-src protein tyrosine kinase activity|activation of janus kinase 1 activity|activation of non-specific protein-tyrosine kinase activity|activation of janus kinase 3 activity|activation of non-membrane spanning protein tyrosine kinase activity|positive regulation of non-specific protein-tyrosine kinase activity|up regulation of Bruton's tyrosine kinase activity|upregulation of cytoplasmic protein tyrosine kinase activity|positive regulation of janus kinase 1 activity|upregulation of non-specific protein-tyrosine kinase activity|up-regulation of janus kinase 3 activity|upregulation of Bruton's tyrosine kinase activity|upregulation of non-membrane spanning protein tyrosine kinase activity|activation of p60c-src protein tyrosine kinase activity|upregulation of janus kinase 3 activity|up-regulation of non-specific protein-tyrosine kinase activity|upregulation of janus kinase 2 activity|up regulation of cytoplasmic protein tyrosine kinase activity|up-regulation of cytoplasmic protein tyrosine kinase activity|positive regulation of focal adhesion kinase activity|upregulation of focal adhesion kinase activity|activation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|up regulation of p60c-src protein tyrosine kinase activity|positive regulation of janus kinase 3 activity|up regulation of non-specific protein-tyrosine kinase activity|up-regulation of p60c-src protein tyrosine kinase activity|up-regulation of focal adhesion kinase activity|up-regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|up regulation of non-membrane spanning protein tyrosine kinase activity|upregulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|up-regulation of Bruton's tyrosine kinase activity|up-regulation of non-membrane spanning protein tyrosine kinase activity|activation of cytoplasmic protein tyrosine kinase activity|up regulation of janus kinase 3 activity|activation of focal adhesion kinase activity|positive regulation of Bruton's tyrosine kinase activity|up-regulation of janus kinase 2 activity|activation of janus kinase 2 activity|up regulation of focal adhesion kinase activity|upregulation of p60c-src protein tyrosine kinase activity|up regulation of janus kinase 2 activity|upregulation of janus kinase 1 activity|positive regulation of janus kinase 2 activity|positive regulation of cytoplasmic protein tyrosine kinase activity|up regulation of janus kinase 1 activity|up-regulation of janus kinase 1 activity nc 2015-03-05T16:34:46Z biological_process owl:Class GO:0061192 biolink:NamedThing negative regulation of vacuole fusion, non-autophagic Any process that decreases the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T09:35:18Z biological_process owl:Class GO:0042144 biolink:NamedThing vacuole fusion, non-autophagic The fusion of two vacuole membranes to form a single vacuole. tmpzr1t_l9r_go_relaxed.owl homotypic vacuole fusion (non-autophagic)|vacuole fusion (non-autophagic)|homotypic vacuole fusion|homotypic vacuole fusion, non-autophagic GO:0042145 biological_process owl:Class GO:0106006 biolink:NamedThing cytoskeletal protein-membrane anchor activity The binding activity of a molecule that brings together a cytoskeletal protein or protein complex and a plasma membrane lipid or membrane-associated protein, in order to maintain the localization of the cytoskeleton at a specific cortical membrane location. tmpzr1t_l9r_go_relaxed.owl F-BAR domain adaptor|cytoskeletal protein-membrane adaptor activity|membrane-cytoskeletal protein tether activity|cytoskeletal protein membrane adaptor|cytoskeletal protein membrane tether activity|membrane-cytoskeletal protein anchor activity|microtubule cortical anchor activity|BAR domain adaptor|cytoskeletal protein membrane anchor activity https://github.com/geneontology/go-ontology/issues/19119|https://github.com/geneontology/go-ontology/issues/18281|https://github.com/geneontology/go-ontology/issues/17668 hjd 2017-04-14T15:11:13Z GO:0140362 molecular_function owl:Class GO:1900491 biolink:NamedThing regulation of [4Fe-4S] cluster assembly Any process that modulates the frequency, rate or extent of [4Fe-4S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl regulation of 4Fe-4S cluster assembly|regulation of [4Fe-4S] cluster biosynthetic process tt 2012-05-02T03:48:49Z biological_process owl:Class GO:0061047 biolink:NamedThing positive regulation of branching involved in lung morphogenesis Any process that increases the rate, frequency, or extent of the process in which a highly ordered sequence of patterning events generates the branched structures of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:50:01Z biological_process owl:Class GO:0034591 biolink:NamedThing rhoptry lumen The volume enclosed by the rhoptry membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0020008 biolink:NamedThing rhoptry A large, club-shaped secretory organelle that forms part of the apical complex of an apicomplexan parasite, and consists of a bulbous body and a narrow electron-dense neck that extends through the conoid at the apical tip of the parasite. The rhoptry necks serve as ducts through which the contents of the rhoptries are secreted after attachment to the host has been completed and at the commencement of invasion. Rhoptry proteins function in the biogenesis and host organellar association of the parasitophorous vacuole. tmpzr1t_l9r_go_relaxed.owl toxoneme|paired organelles Wikipedia:Rhoptry cellular_component owl:Class GO:1903394 biolink:NamedThing protein localization to kinetochore involved in kinetochore assembly Any protein localization to kinetochore that is involved in kinetochore assembly. tmpzr1t_l9r_go_relaxed.owl protein localization to kinetochore involved in centromere/kinetochore complex maturation|condensin localization to kinetochore involved in kinetochore formation|condensin localization to kinetochore involved in centromere and kinetochore complex maturation|protein localisation to kinetochore involved in chromosome-kinetochore attachment|condensin localization to kinetochore involved in centromere/kinetochore complex maturation|protein localization to kinetochore involved in kinetochore formation|protein localisation to kinetochore involved in kinetochore assembly|condensin localization to kinetochore involved in chromosome-kinetochore attachment|condensin localization to kinetochore involved in kinetochore assembly|protein localisation to kinetochore involved in centromere/kinetochore complex maturation|protein localisation to kinetochore involved in kinetochore formation|protein localization to kinetochore involved in centromere and kinetochore complex maturation|protein localisation to kinetochore involved in centromere and kinetochore complex maturation|protein localization to kinetochore involved in chromosome-kinetochore attachment vw 2014-08-29T13:11:55Z biological_process owl:Class GO:0051382 biolink:NamedThing kinetochore assembly The aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. tmpzr1t_l9r_go_relaxed.owl centromere and kinetochore complex maturation|kinetochore formation|centromere/kinetochore complex maturation|chromosome-kinetochore attachment GO:0000069 biological_process owl:Class GO:0032921 biolink:NamedThing sarcosine oxidase complex A complex consisting of 4 protein subunits as a heterotetramer, that possesses sarcosine oxidase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0036304 biolink:NamedThing umbilical cord morphogenesis The process in which the anatomical structures of the umbilical cord are generated and organized. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T10:12:11Z biological_process owl:Class GO:0021547 biolink:NamedThing midbrain-hindbrain boundary initiation The regionalization process that gives rise to the midbrain-hindbrain boundary. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl MHB formation|midbrain-hindbrain boundary formation|midbrain-hindbrain boundary biosynthesis|isthmus formation|isthmus biosynthesis|MHB biosynthesis biological_process owl:Class GO:0048868 biolink:NamedThing pollen tube development The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098885 biolink:NamedThing modification of postsynaptic actin cytoskeleton Any process that modifies the structure of a postsynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl postsynaptic actin cytoskeleton remodelling This class does not cover assembly or disassembly of synapses, only the modification/remodelling of existing ones. biological_process owl:Class GO:0044024 biolink:NamedThing histone kinase activity (H2A-S1 specific) Catalysis of the transfer of a phosphate group to the serine-1 residue of the N-terminal tail of histone H2A. tmpzr1t_l9r_go_relaxed.owl histone-serine kinase activity (H2A-S1 specific)|histone serine kinase activity (H2A-S1 specific) molecular_function owl:Class GO:1905420 biolink:NamedThing vascular associated smooth muscle cell differentiation involved in phenotypic switching Any vascular smooth muscle cell differentiation that is involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell differentiation involved in phenotypic switching|vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism|VSMC differentiation involved in phenotypic switching|VSMC differentiation involved in phenotypic dimorphism|vascular smooth muscle cell differentiation involved in phenotypic dimorphism rph 2016-09-05T12:43:46Z biological_process owl:Class GO:0033116 biolink:NamedThing endoplasmic reticulum-Golgi intermediate compartment membrane The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system. tmpzr1t_l9r_go_relaxed.owl ER-Golgi intermediate compartment membrane cellular_component owl:Class GO:0061250 biolink:NamedThing mesonephric glomerular epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a mesonephric glomerular epithelial cell. Mesonephric glomerular epithelial cells are specialized epithelial cells that form part of the mesonephric glomerulus; there are two types, mesonephric glomerular parietal epithelial cells and mesonephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:20:03Z biological_process owl:Class GO:0038014 biolink:NamedThing negative regulation of insulin receptor signaling pathway by insulin receptor internalization Any process in which internalization of an insulin receptor stops, prevents, or reduces the frequency, rate or extent of insulin receptor signal transduction. Internalization of insulin in association with its receptor clears insulin from the circulation and is necessary for subsequent insulin dissociation from the receptor and insulin degradation. tmpzr1t_l9r_go_relaxed.owl agonist-stimulated insulin receptor internalization|negative regulation of insulin receptor signalling pathway by insulin receptor internalization bf 2011-06-23T04:08:31Z biological_process owl:Class GO:1902119 biolink:NamedThing regulation of meiotic spindle elongation Any process that modulates the frequency, rate or extent of meiotic spindle elongation. tmpzr1t_l9r_go_relaxed.owl regulation of spindle elongation during meiosis al 2013-05-15T15:15:48Z biological_process owl:Class GO:1903749 biolink:NamedThing positive regulation of establishment of protein localization to mitochondrion Any process that activates or increases the frequency, rate or extent of establishment of protein localization to mitochondrion. tmpzr1t_l9r_go_relaxed.owl up regulation of establishment of protein localisation to mitochondrion|positive regulation of establishment of protein localisation to mitochondrion|up regulation of establishment of protein localization to mitochondrion|up-regulation of establishment of protein localization in mitochondrion|activation of establishment of protein localization to mitochondrion|up-regulation of establishment of protein localization to mitochondrion|upregulation of establishment of protein localization to mitochondrion|activation of establishment of protein localization in mitochondrion|upregulation of establishment of protein localisation to mitochondrion|up regulation of establishment of protein localization in mitochondrion|positive regulation of establishment of protein localization in mitochondrion|upregulation of establishment of protein localization in mitochondrion|activation of establishment of protein localisation to mitochondrion|up-regulation of establishment of protein localisation to mitochondrion krc 2014-12-12T22:18:26Z biological_process owl:Class GO:0031322 biolink:NamedThing ascospore-type prospore-specific spindle pole body remodeling A spindle pole body (SPB) organization process that takes place during the second meiotic division during ascospore formation and results in the structural reorganization of the SPB; includes the recruitment of sporulation-specific proteins to the outer plaque to form the meiotic outer plaque (MOP). tmpzr1t_l9r_go_relaxed.owl ascospore-type prospore-specific spindle pole body modification|forespore-specific spindle pole body remodeling|forespore specific spindle pole body remodeling|ascospore-type prospore-specific spindle pole body remodelling|sporulation-specific spindle pole body remodeling|prospore-specific spindle pole body remodeling biological_process owl:Class GO:0030426 biolink:NamedThing growth cone The migrating motile tip of a growing neuron projection, where actin accumulates, and the actin cytoskeleton is the most dynamic. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Growth_cone cellular_component owl:Class GO:0044602 biolink:NamedThing protein deadenylylation The removal of an adenylyl group (adenosine 5'-monophosphate; AMP) from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein deAMPylation jl 2012-05-01T04:16:22Z biological_process owl:Class GO:1903584 biolink:NamedThing regulation of histone deubiquitination Any process that modulates the frequency, rate or extent of histone deubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of histone deubiquitinylation|regulation of histone deubiquitylation lb 2014-11-03T13:47:26Z biological_process owl:Class GO:0060699 biolink:NamedThing regulation of endoribonuclease activity Any process that modulates the rate, frequency or extent of the catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:43:10Z biological_process owl:Class GO:0044289 biolink:NamedThing mitochondrial inner-outer membrane contact site Sites of close apposition of the inner and outer mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl contact site|bridge contact site https://github.com/geneontology/go-ontology/issues/18994 jl 2010-02-04T02:25:11Z GO:0044285 cellular_component owl:Class GO:0036065 biolink:NamedThing fucosylation The covalent attachment of a fucosyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-15T11:16:19Z biological_process owl:Class GO:1904419 biolink:NamedThing negative regulation of telomeric loop formation Any process that stops, prevents or reduces the frequency, rate or extent of telomeric loop formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of telomeric loop formation|down regulation of t-loop biosynthesis|down regulation of telomeric loop formation|inhibition of t-loop biosynthesis|negative regulation of t-loop biosynthesis|negative regulation of t-loop formation|inhibition of telomeric loop formation|inhibition of t-loop formation|down-regulation of t-loop formation|downregulation of t-loop formation|down regulation of t-loop formation|downregulation of t-loop biosynthesis|down-regulation of t-loop biosynthesis|downregulation of telomeric loop formation nc 2015-07-01T10:40:29Z biological_process owl:Class GO:1990760 biolink:NamedThing osmolarity-sensing cation channel activity Enables the transmembrane transfer of a cation by a channel that opens when a change in the osmolarity occurs in the extracellular space of the cell in which the cation channel resides. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-05T21:58:50Z molecular_function owl:Class GO:1902318 biolink:NamedThing synthesis of RNA primer involved in nuclear cell cycle DNA replication Any synthesis of RNA primer that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication, synthesis of RNA primer involved in DNA replication during S phase|DNA replication, synthesis of RNA primer involved in DNA replication involved in S-phase|replication priming involved in DNA replication involved in S-phase|replication priming involved in DNA replication involved in S phase|replication priming involved in DNA replication during S phase|DNA replication, synthesis of RNA primer involved in DNA replication involved in S phase|replication priming involved in nuclear cell cycle DNA replication jl 2013-07-23T14:00:33Z biological_process owl:Class GO:0035502 biolink:NamedThing metanephric part of ureteric bud development The development of the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-29T03:22:21Z biological_process owl:Class GO:0003872 biolink:NamedThing 6-phosphofructokinase activity Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl fructose 6-phosphate kinase activity|D-fructose-6-phosphate 1-phosphotransferase activity|phosphofructokinase (phosphorylating)|phospho-1,6-fructokinase activity|ATP:D-fructose-6-phosphate 1-phosphotransferase activity|6-phosphofructose 1-kinase activity|6-phosphofructokinase reduction|ATP-dependent phosphofructokinase activity|nucleotide triphosphate-dependent phosphofructokinase activity|fructose 6-phosphokinase activity|phosphofructokinase I activity|PFK|phosphohexokinase activity Reactome:R-HSA-70467|MetaCyc:6PFRUCTPHOS-RXN|EC:2.7.1.11|RHEA:16109 molecular_function owl:Class GO:1904569 biolink:NamedThing regulation of selenocysteine incorporation Any process that modulates the frequency, rate or extent of selenocysteine incorporation. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T17:26:38Z biological_process owl:Class GO:0010994 biolink:NamedThing free ubiquitin chain polymerization The process of creating free ubiquitin chains, compounds composed of a large number of ubiquitin monomers. These chains are not conjugated to a protein. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-03T11:41:03Z biological_process owl:Class GO:0016230 biolink:NamedThing sphingomyelin phosphodiesterase activator activity Increases the activity of the enzyme sphingomyelin phosphodiesterase. tmpzr1t_l9r_go_relaxed.owl neutral sphingomyelinase activator molecular_function owl:Class GO:0021652 biolink:NamedThing rhombomere 1 formation The process that gives rise to rhombomere 1. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021651 biolink:NamedThing rhombomere 1 morphogenesis The process in which the anatomical structure of rhombomere 1 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050220 biolink:NamedThing prostaglandin-E synthase activity Catalysis of the reaction: prostaglandin H(2) = prostaglandin E(2). tmpzr1t_l9r_go_relaxed.owl prostaglandin R-prostaglandin E isomerase activity|PGE isomerase activity|endoperoxide isomerase activity|prostaglandin H-E isomerase activity|PGH-PGE isomerase activity|prostaglandin-H2 E-isomerase activity|Prostaglandin-H(2) E-isomerase activity|PGE2 isomerase activity|prostaglandin endoperoxide E isomerase activity|(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate E-isomerase activity|prostaglandin endoperoxide E2 isomerase activity MetaCyc:PROSTAGLANDIN-E-SYNTHASE-RXN|Reactome:R-HSA-265295|KEGG_REACTION:R02265|EC:5.3.99.3|RHEA:12893|Reactome:R-HSA-2161660 molecular_function owl:Class GO:2000385 biolink:NamedThing positive regulation of ectoderm development Any process that activates or increases the frequency, rate or extent of ectoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:17:39Z biological_process owl:Class GO:0010483 biolink:NamedThing pollen tube reception Interaction between the pollen tube, part of the male gametophyte, and the ovule, part of the female gametophyte, that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000357 biolink:NamedThing negative regulation of kidney smooth muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of kidney smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-03T02:14:28Z biological_process owl:Class GO:0008586 biolink:NamedThing imaginal disc-derived wing vein morphogenesis The process in which anatomical structures of the veins on an imaginal disc-derived wing are generated and organized. tmpzr1t_l9r_go_relaxed.owl wing vein morphogenesis biological_process owl:Class GO:0032424 biolink:NamedThing negative regulation of mismatch repair Any process that stops, prevents, or reduces the frequency, rate or extent of mismatch repair. tmpzr1t_l9r_go_relaxed.owl downregulation of mismatch repair|down regulation of mismatch repair|down-regulation of mismatch repair|inhibition of mismatch repair biological_process owl:Class GO:0006298 biolink:NamedThing mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. tmpzr1t_l9r_go_relaxed.owl MMR|MutS/MutL/MutH pathway|mismatch repair, MutL-like pathway|long patch mismatch repair system Wikipedia:DNA_mismatch_repair GO:0006300 biological_process owl:Class GO:0015877 biolink:NamedThing biopterin transport The directed movement of biopterin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Biopterin is a growth factor for certain protozoans and some insects; it is widely distributed in tissues and functions in a reduced form, tetrahydrobiopterin, as a hydroxylation coenzyme. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901877 biolink:NamedThing negative regulation of calcium ion binding Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion binding. tmpzr1t_l9r_go_relaxed.owl down regulation of calcium ion storage activity|negative regulation of calcium ion storage activity|downregulation of calcium ion storage activity|down regulation of calcium ion binding|inhibition of calcium ion binding|down-regulation of calcium ion storage activity|inhibition of calcium ion storage activity|down-regulation of calcium ion binding|downregulation of calcium ion binding rl 2013-02-06T12:38:22Z biological_process owl:Class GO:0050980 biolink:NamedThing detection of light stimulus involved in magnetoreception The series of events involved in magnetoception in which a light stimulus is received and converted into a molecular signal. Downstream processing of the light information in addition to other sensory data allows organisms to perceive the orientation of a magnetic field. tmpzr1t_l9r_go_relaxed.owl magnetoreception, sensory detection of light stimulus|sensory transduction of light stimulus during magnetoreception|sensory detection of light stimulus during magnetoreception|magnetoreception, sensory transduction of light stimulus|magnetoreception, detection of light stimulus biological_process owl:Class GO:0120223 biolink:NamedThing larynx morphogenesis The process in which the larynx is generated and organized. The larynx is a continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration. tmpzr1t_l9r_go_relaxed.owl laryngeal morphogenesis krc 2020-02-22T01:42:04Z biological_process owl:Class GO:0019139 biolink:NamedThing cytokinin dehydrogenase activity Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. tmpzr1t_l9r_go_relaxed.owl N6-dimethylallyladenine:acceptor oxidoreductase activity|6-N-dimethylallyladenine:acceptor oxidoreductase activity|cytokinin oxidase activity|N6-dimethylallyladenine:(acceptor) oxidoreductase activity RHEA:13625|EC:1.5.99.12|MetaCyc:PWY-2841|MetaCyc:1.5.99.12-RXN GO:0046420 molecular_function owl:Class GO:0062235 biolink:NamedThing axonemal basal plate assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal basal plate. tmpzr1t_l9r_go_relaxed.owl basal plate assembly|axoneme basal plate assembly|axonemal basal plate formation dph 2020-04-16T12:21:35Z biological_process owl:Class GO:0043845 biolink:NamedThing DNA polymerase III, proofreading complex A subcomplex of DNA polymerase III composed of the epsilon subunit which has proofreading activity, and the theta subunit which enhances the epsilon subunit's proofreading activity. tmpzr1t_l9r_go_relaxed.owl DNA polymerase III, proof-reading complex|DNA polymerase III, proofreading subcomplex|DNA polymerase III, proof-reading subcomplex cellular_component owl:Class GO:0044776 biolink:NamedThing DNA polymerase III, core complex The DNA polymerase III core complex consists of the alpha,epsilon and theta subunits and is carries out the polymerase and the 3'-5' exonuclease proofreading activities. tmpzr1t_l9r_go_relaxed.owl jl 2013-03-13T14:09:38Z cellular_component owl:Class GO:0045298 biolink:NamedThing tubulin complex A heterodimer of tubulins alpha and beta that constitutes the protomer for microtubule assembly. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001770 biolink:NamedThing establishment of natural killer cell polarity The directed orientation of natural killer cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with a cell displaying natural killer cell activating ligands. tmpzr1t_l9r_go_relaxed.owl establishment of NK cell polarity|NK cell polarization|natural killer cell polarization biological_process owl:Class GO:0009244 biolink:NamedThing lipopolysaccharide core region biosynthetic process The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide core region formation|lipopolysaccharide core region synthesis|lipopolysaccharide core region biosynthesis|lipopolysaccharide core region anabolism|LPS core region biosynthetic process biological_process owl:Class GO:0002681 biolink:NamedThing somatic recombination of T cell receptor gene segments The process in which T cell receptor genes are formed through recombination of the germline genetic elements, also known as T cell receptor gene segments. tmpzr1t_l9r_go_relaxed.owl somatic recombination of TCR gene segments biological_process owl:Class GO:2001012 biolink:NamedThing mesenchymal cell differentiation involved in renal system development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the renal system as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mesenchymal cell differentiation involved in urinary system development|mesenchymal cell differentiation involved in urinary tract development yaf 2011-08-09T04:05:14Z biological_process owl:Class GO:0021830 biolink:NamedThing interneuron migration from the subpallium to the cortex The directed movement of interneurons from the subpallium to the cortex during forebrain development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045874 biolink:NamedThing positive regulation of sevenless signaling pathway Any process that activates or increases the frequency, rate or extent of the sevenless signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of sevenless signaling pathway|positive regulation of sevenless signalling pathway|stimulation of sevenless signaling pathway|up regulation of sevenless signaling pathway|activation of sevenless signaling pathway|up-regulation of sevenless signaling pathway|positive regulation of sev signaling pathway biological_process owl:Class GO:0099139 biolink:NamedThing cheating during chimeric sorocarp development Any process during chimeric sorocarp development that increases by which a cell increases the number of spore cells sharing its genotype at the expense of cells of other genotypes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032162 biolink:NamedThing mating projection septin band A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the neck of a shmoo (mating projection). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070447 biolink:NamedThing positive regulation of oligodendrocyte progenitor proliferation Any process that activates or increases the rate or extent of oligodendrocyte progenitor proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of oligodendrocyte precursor proliferation biological_process owl:Class GO:0070444 biolink:NamedThing oligodendrocyte progenitor proliferation The multiplication or reproduction of oligodendrocyte progenitor cells by cell division, resulting in the expansion of their population. Oligodendrocyte progenitors give rise to oligodendrocytes, which form the insulating myelin sheath of axons in the central nervous system. tmpzr1t_l9r_go_relaxed.owl oligodendrocyte precursor proliferation biological_process owl:Class GO:0032932 biolink:NamedThing negative regulation of astral microtubule depolymerization Any process that stops, prevents, or reduces the frequency, rate or extent of the depolymerization of astral microtubules. tmpzr1t_l9r_go_relaxed.owl astral microtubule stabilization biological_process owl:Class GO:0140619 biolink:NamedThing DNA strand exchange activator activity Binds to and increases a DNA strand exchange activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20964 pg 2021-02-26T17:56:46Z molecular_function owl:Class GO:2000421 biolink:NamedThing positive regulation of eosinophil extravasation Any process that activates or increases the frequency, rate or extent of eosinophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:47:42Z biological_process owl:Class GO:0072682 biolink:NamedThing eosinophil extravasation The migration of an eosinophil from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T04:02:22Z biological_process owl:Class GO:0003329 biolink:NamedThing pancreatic PP cell fate commitment The commitment of a cell to a pancreatic PP cell fate and its capacity to differentiate into a pancreatic PP cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T08:35:13Z biological_process owl:Class GO:0003312 biolink:NamedThing pancreatic PP cell differentiation The process in which relatively unspecialized cells acquire specialized structural and functional features of a pancreatic polypeptide-producing cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide. tmpzr1t_l9r_go_relaxed.owl pancreatic polypeptide-producing cell differentiation dph 2009-10-26T09:32:32Z biological_process owl:Class GO:0060799 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in endodermal cell fate specification The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt an endoderm fate. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in endodermal cell fate specification dph 2009-08-06T11:24:01Z biological_process owl:Class GO:0001714 biolink:NamedThing endodermal cell fate specification The cell fate determination process that results in a cell becoming capable of differentiating autonomously into an endoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl endoderm cell fate specification biological_process owl:Class GO:0006661 biolink:NamedThing phosphatidylinositol biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. tmpzr1t_l9r_go_relaxed.owl phosphoinositide biosynthetic process|phosphatidylinositol anabolism|phosphatidylinositol biosynthesis|PtdIns biosynthetic process|PtdIns biosynthesis|phosphoinositide biosynthesis|phosphatidylinositol formation|phosphatidylinositol synthesis GO:0046489 biological_process owl:Class GO:0061449 biolink:NamedThing olfactory bulb tufted cell development The process whose specific outcome is the progression of an olfactory bulb tufted cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl dph 2012-05-15T12:30:21Z biological_process owl:Class GO:1903231 biolink:NamedThing mRNA binding involved in posttranscriptional gene silencing Any mRNA binding that is involved in posttranscriptional gene silencing. tmpzr1t_l9r_go_relaxed.owl mRNA binding involved in PTGS|mRNA binding involved in quelling|mRNA binding involved in post-transcriptional gene silencing|mRNA binding involved in cosuppression jl 2014-07-31T10:30:43Z molecular_function owl:Class GO:0016333 biolink:NamedThing morphogenesis of follicular epithelium The process in which the anatomical structures of a follicular epithelium are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043218 biolink:NamedThing compact myelin The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs. tmpzr1t_l9r_go_relaxed.owl oligodendrocyte compact myelin|Schwann cell compact myelin NIF_Subcellular:sao1123256993 cellular_component owl:Class GO:0052606 biolink:NamedThing chlorophyllide a oxygenase activity Catalysis of the reaction: chlorophyllide a + NADPH + O2 + 2 H+ = 7-hydroxychlorophyllide a + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl chlorophyllide-a oxygenase activity|chlorophyllide a:oxygen 7-oxidoreductase activity|CAO activity|chlorophyll a oxygenase activity MetaCyc:RXN-7676|KEGG_REACTION:R08203|RHEA:22676 molecular_function owl:Class GO:0010277 biolink:NamedThing chlorophyllide a oxygenase [overall] activity Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl chlorophyll b synthesis activity|CAO activity|chlorophyll-b synthesis activity|chlorophyllide a:oxygen 7-oxidoreduction activity|chlorophyll a oxygenation activity|chlorophyllide-a oxygenation activity EC:1.14.13.122|RHEA:30359 This is a process composed of two reactions represented by the terms 'GO:0052606 : chlorophyllide a oxygenase activity' and 'GO:0052607 : 7-hydroxy-chlorophyllide a oxygenase activity'. GO:0046407 molecular_function owl:Class GO:0071960 biolink:NamedThing maintenance of mitotic sister chromatid cohesion, centromeric The process in which the association between sister chromatids of a replicated chromosome along the length of the centromeric region is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl maintenance of sister chromatin cohesion at centromere at mitosis|maintenance of mitotic sister chromatin cohesion at centromere|maintenance of centromeric mitotic sister chromatin cohesion mah 2011-06-01T04:10:59Z biological_process owl:Class GO:0140523 biolink:NamedThing GTPase-dependent fusogenic activity A GTPase activity that mediates the joining two lipid bilayers to form a single membrane. tmpzr1t_l9r_go_relaxed.owl membrane fusion GTPase activity https://github.com/geneontology/go-ontology/issues/19942 pg 2020-09-24T09:49:40Z molecular_function owl:Class GO:0015864 biolink:NamedThing pyrimidine nucleoside transport The directed movement of a pyrimidine nucleoside, a pyrimidine base covalently bonded to a ribose or deoxyribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990033 biolink:NamedThing dendritic branch point The part of a dendritic tree where it branches, giving rise to a dendritic branch. tmpzr1t_l9r_go_relaxed.owl branch point of dendrite NIF_Subcellular:sao1348591767 pr 2013-02-07T13:01:01Z cellular_component owl:Class GO:0044306 biolink:NamedThing neuron projection terminus The specialized, terminal region of a neuron projection such as an axon or a dendrite. tmpzr1t_l9r_go_relaxed.owl nerve terminal|neuron terminal specialization|neuron projection terminal jl 2010-02-05T02:44:04Z cellular_component owl:Class GO:0090642 biolink:NamedThing microsporidian-type exospore The dense, protein rich outermost layer of a microsporidian spore wall that lies above the endospore. tmpzr1t_l9r_go_relaxed.owl tb 2015-05-04T14:17:06Z cellular_component owl:Class GO:0031160 biolink:NamedThing spore wall The specialized envelope lying outside the cell membrane of a spore. tmpzr1t_l9r_go_relaxed.owl spore coat cellular_component owl:Class GO:0021970 biolink:NamedThing corticospinal neuron axon guidance through the basilar pons The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after exiting the cerebral peduncle through the basilar pons in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through the basilar pons biological_process owl:Class GO:0021525 biolink:NamedThing lateral motor column neuron differentiation The process in which differentiating motor neurons in the neural tube acquire the specialized structural and/or functional features of lateral motor column neurons. Lateral motor column neurons are generated only on limb levels and send axons into the limb mesenchyme. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001553 biolink:NamedThing luteinization The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation. tmpzr1t_l9r_go_relaxed.owl luteal phase Wikipedia:Luteal_phase|Wikipedia:Luteinization biological_process owl:Class GO:0055102 biolink:NamedThing lipase inhibitor activity Binds to and stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045840 biolink:NamedThing positive regulation of mitotic nuclear division Any process that activates or increases the frequency, rate or extent of mitosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitosis|upregulation of mitosis|stimulation of mitosis|up-regulation of mitosis|mitogenic activity|activation of mitosis|up regulation of mitosis biological_process owl:Class GO:0022025 biolink:NamedThing leukemia inhibitory factor signaling pathway involved in forebrain neuron fate commitment Any series of molecular signals initiated by the binding of leukemia inhibitory factor to a receptor on the surface of the target cell, that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl leukemia inhibitory factor signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:0039014 biolink:NamedThing cell differentiation involved in pronephros development The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the pronephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl cell differentiation involved in pronephric kidney development bf 2010-07-02T09:59:25Z biological_process owl:Class GO:0070266 biolink:NamedThing necroptotic process A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former. tmpzr1t_l9r_go_relaxed.owl induction of necroptosis by extracellular signals|extracellular signal-induced necroptosis|programmed necrotic cell death|establishment of necroptosis of activated-T cells|activation of necroptosis|parthanatos|RIPK1-mediated regulated necrosis|necroptosis|PARP-dependent cell death|activation of necroptosis of activated-T cells|TNF-induced necroptosis|establishment of necroptosis|induction of necroptosis of activated-T cells|programmed necrosis|activation of necroptosis in response to extracellular signals|induction of necroptosis|activation of necroptosis by extracellular signals Examples of this are Birc2 and Birc3 (UniProt symbols Q62210 and O08863) in PMID:21052097. GO:0060555|GO:0060554|GO:0060553 biological_process owl:Class GO:1902568 biolink:NamedThing positive regulation of eosinophil activation Any process that activates or increases the frequency, rate or extent of eosinophil activation. tmpzr1t_l9r_go_relaxed.owl activation of eosinophil activation|up regulation of eosinophil activation|up-regulation of eosinophil activation|upregulation of eosinophil activation ecu 2013-12-10T15:54:52Z biological_process owl:Class GO:0075313 biolink:NamedThing basidium development The process that leads to the development of basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to Basidiomycetes and distinguishes them from other kinds of fungi. tmpzr1t_l9r_go_relaxed.owl Note that basidiospores and basidia are separate biological structures. The basidium is the structure that bear the basidiospores, but the development of the basidium is a different process than the formation of the basidiospores themselves. For this reason, GO:0034295 basidiospore formation and GO:0075313 basidium development are different terms and are not linked. biological_process owl:Class GO:0007362 biolink:NamedThing terminal region determination Specification of the terminal regions (the two non-segmented ends) of the embryo by the gap genes; exemplified in insects by the actions of huckebein and tailless gene products. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007354 biolink:NamedThing zygotic determination of anterior/posterior axis, embryo The specification of the anterior/posterior axis of the embryo by products of genes expressed in the zygote; exemplified in insects by the gap genes, pair rule genes and segment polarity gene cascade. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904409 biolink:NamedThing regulation of secretory granule organization Any process that modulates the frequency, rate or extent of secretory granule organization. tmpzr1t_l9r_go_relaxed.owl regulation of secretory granule organization and biogenesis|regulation of secretory granule organisation sl 2015-06-25T19:40:42Z biological_process owl:Class GO:0033363 biolink:NamedThing secretory granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. tmpzr1t_l9r_go_relaxed.owl secretory granule organization and biogenesis|secretory granule organisation biological_process owl:Class GO:0045979 biolink:NamedThing positive regulation of nucleoside metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleosides. tmpzr1t_l9r_go_relaxed.owl stimulation of nucleoside metabolic process|upregulation of nucleoside metabolic process|up regulation of nucleoside metabolic process|up-regulation of nucleoside metabolic process|positive regulation of nucleoside metabolism|activation of nucleoside metabolic process biological_process owl:Class GO:0061436 biolink:NamedThing establishment of skin barrier Establishment of the epithelial barrier, the functional barrier in the skin that limits its permeability. tmpzr1t_l9r_go_relaxed.owl skin barrier development|establishment of epithelial barrier|epithelial barrier development dph 2012-03-02T09:14:26Z biological_process owl:Class GO:0044185 biolink:NamedThing host cell late endosome membrane The lipid bilayer surrounding a host cell late endosome. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T03:00:39Z cellular_component owl:Class GO:0044184 biolink:NamedThing host cell late endosome A prelysosomal endocytic organelle differentiated from host early endosomes by lower lumenal pH and different protein composition. Host late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T02:58:34Z cellular_component owl:Class GO:0007298 biolink:NamedThing border follicle cell migration The directed movement of a border cell through the nurse cells to reach the oocyte. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl border cell migration biological_process owl:Class GO:0001532 biolink:NamedThing interleukin-21 receptor activity Combining with interleukin-21 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-21R|IL-21 receptor activity molecular_function owl:Class GO:0019977 biolink:NamedThing interleukin-21 binding Binding to interleukin-21. tmpzr1t_l9r_go_relaxed.owl IL-21 binding molecular_function owl:Class GO:0086081 biolink:NamedThing cell adhesive protein binding involved in atrial cardiac muscle cell-AV node cell communication Binding to a protein or protein complex that results in the connection of an atrial cardiomyocyte with an AV node cell and contributes to the communication between the two cells. tmpzr1t_l9r_go_relaxed.owl cell adhesive protein binding involved in atrial cardiomyocyte-atrioventricular node cell communication|cell adhesive protein binding involved in atrial cardiomyocyte-AV node cell communication dph 2011-11-22T11:00:47Z molecular_function owl:Class GO:2001196 biolink:NamedThing positive regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine Any process that activates or increases the frequency, rate or extent of lysine biosynthetic process via alpha-aminoadipate and saccharopine. tmpzr1t_l9r_go_relaxed.owl positive regulation of lysine biosynthesis via aminoadipic acid and saccharopine|positive regulation of lysine biosynthetic process via aminoadipic acid and saccharopine mcc 2011-11-03T07:57:24Z biological_process owl:Class GO:0014063 biolink:NamedThing negative regulation of serotonin secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of serotonin. tmpzr1t_l9r_go_relaxed.owl positive regulation of serotonin release|inhibition of serotonin secretion|down regulation of serotonin secretion|down-regulation of serotonin secretion|downregulation of serotonin secretion biological_process owl:Class GO:1904863 biolink:NamedThing regulation of beta-catenin-TCF complex assembly Any process that modulates the frequency, rate or extent of beta-catenin-TCF complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of beta-catenin/LEF complex assembly|regulation of beta-catenin-TCF complex formation|regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|regulation of beta-catenin/LEF complex formation|regulation of beta-catenin/lymphoid enhancer binding factor complex formation|regulation of beta-catenin/T-cell factor complex formation|regulation of beta-catenin/T-cell factor complex assembly bf 2015-12-17T13:50:39Z biological_process owl:Class GO:1904837 biolink:NamedThing beta-catenin-TCF complex assembly The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex. tmpzr1t_l9r_go_relaxed.owl beta-catenin/T-cell factor complex formation|beta-catenin/lymphoid enhancer binding factor complex formation|beta-catenin/LEF complex assembly|beta-catenin/LEF complex formation|beta-catenin/T-cell factor complex assembly|beta-catenin-TCF complex formation|beta-catenin/lymphoid enhancer binding factor complex assembly bf 2015-12-03T17:20:26Z biological_process owl:Class GO:0000735 biolink:NamedThing removal of nonhomologous ends The removal of nonhomologous sequences at the broken 3' single-strand DNA end before DNA repair synthesis can occur. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000456 biolink:NamedThing negative regulation of T-helper 17 cell extravasation Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:50:29Z biological_process owl:Class GO:0042494 biolink:NamedThing detection of bacterial lipoprotein The series of events in which a bacterial lipoprotein stimulus is received by a cell and converted into a molecular signal. Bacterial lipoproteins are lipoproteins characterized by the presence of conserved sequence motifs called pathogen-associated molecular patterns (PAMPs). tmpzr1t_l9r_go_relaxed.owl perception of bacterial lipoprotein|detection of Lpp|perception of BLP|perception of Lpp|detection of BLP biological_process owl:Class GO:0016045 biolink:NamedThing detection of bacterium The series of events in which a stimulus from a bacterium is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of bacterium|perception of bacteria|detection of bacteria GO:0009681|GO:0009598 biological_process owl:Class GO:0120077 biolink:NamedThing angiogenic sprout fusion The connection of an angiogenic sprout to another vessel or sprout during the formation of vascular networks by sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl blood vessel anastomosis https://github.com/geneontology/go-ontology/issues/13690 krc 2017-06-27T21:16:55Z biological_process owl:Class GO:0007156 biolink:NamedThing homophilic cell adhesion via plasma membrane adhesion molecules The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072231 biolink:NamedThing metanephric proximal convoluted tubule segment 1 development The process whose specific outcome is the progression of the S1 portion of the metanephric proximal convoluted tubule over time, from its formation to the mature structure. The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes. tmpzr1t_l9r_go_relaxed.owl metanephric S1 development mah 2010-03-18T03:39:10Z biological_process owl:Class GO:0072229 biolink:NamedThing metanephric proximal convoluted tubule development The process whose specific outcome is the progression of the metanephric proximal convoluted tubule over time, from its formation to the mature structure. The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:37:56Z biological_process owl:Class GO:0007205 biolink:NamedThing protein kinase C-activating G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of protein kinase C activity by G-protein coupled receptor protein signalling pathway|protein kinase C-activating G-protein coupled receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway biological_process owl:Class GO:0034515 biolink:NamedThing proteasome storage granule An aggregation of proteasome core protease (CP) and regulatory particle (RP) complexes that localizes in the cytoplasm as dot-like structures when cells are in a quiescent state. tmpzr1t_l9r_go_relaxed.owl PSG https://github.com/geneontology/go-ontology/issues/20297 cellular_component owl:Class GO:0007359 biolink:NamedThing posterior abdomen determination The regionalization process in which the posterior (abdominal) regions of the embryo are specified by the gap genes. tmpzr1t_l9r_go_relaxed.owl Note that this process is exemplified in insects by the actions of the knirps gene product. biological_process owl:Class GO:1900038 biolink:NamedThing negative regulation of cellular response to hypoxia Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to hypoxia. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to hypoxia|negative regulation of cellular response to lowered oxygen tension|negative regulation of cellular response to hypoxic stress|down-regulation of cellular response to hypoxic stress|downregulation of cellular response to hypoxic stress|downregulation of cellular response to lowered oxygen tension|inhibition of cellular response to hypoxia|down regulation of cellular response to lowered oxygen tension|downregulation of cellular response to hypoxia|down-regulation of cellular response to lowered oxygen tension|down regulation of cellular response to hypoxic stress|down regulation of cellular response to hypoxia|inhibition of cellular response to hypoxic stress|inhibition of cellular response to lowered oxygen tension yaf 2012-01-17T09:29:16Z biological_process owl:Class GO:0042714 biolink:NamedThing dosage compensation complex assembly The aggregation, arrangement and bonding together of proteins on DNA or RNA to form the complex that mediates dosage compensation on one or more X chromosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034098 biolink:NamedThing VCP-NPL4-UFD1 AAA ATPase complex A multiprotein ATPase complex required for the efficient dislocation of ER-lumenal degradation substrates, and their subsequent proteolysis by the proteasome. In budding yeast, this complex includes Cdc48p, Npl4p and Ufd1p proteins. In mammals, this complex includes a hexamer of VCP/p97 (a cytosolic ATPase) and trimers of each of its cofactors UFD1L and NPL4 (NPLOC4) (e.g. a 6:3:3 stoichiometry). tmpzr1t_l9r_go_relaxed.owl p97-Ufd1-Npl4 complex|Cdc48p-Npl4p-Ufd1p AAA ATPase complex cellular_component owl:Class GO:0033206 biolink:NamedThing meiotic cytokinesis A cell cycle process that results in the division of the cytoplasm of a cell after meiosis, resulting in the separation of the original cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis after meiosis biological_process owl:Class GO:0060682 biolink:NamedThing primary ureteric bud growth The process in which the primary ureteric bud grows along its axis dorsally toward the metanephric blastema. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T02:56:01Z biological_process owl:Class GO:0000964 biolink:NamedThing mitochondrial RNA 5'-end processing Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA 5' end processing biological_process owl:Class GO:0030244 biolink:NamedThing cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. tmpzr1t_l9r_go_relaxed.owl cellulose biosynthesis|cellulose anabolism|cellulose synthesis|cellulose formation MetaCyc:PWY-1001 GO:0016178 biological_process owl:Class GO:0032916 biolink:NamedThing positive regulation of transforming growth factor beta3 production Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3. tmpzr1t_l9r_go_relaxed.owl stimulation of transforming growth factor-beta3 production|up-regulation of transforming growth factor-beta3 production|upregulation of transforming growth factor-beta3 production|positive regulation of TGF-B3 production|positive regulation of TGFB3 production|up regulation of transforming growth factor-beta3 production|positive regulation of transforming growth factor-beta3 production|activation of transforming growth factor-beta3 production biological_process owl:Class GO:0048750 biolink:NamedThing compound eye corneal lens morphogenesis The process in which the anatomical structures of the compound eye corneal lens are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007250 biolink:NamedThing activation of NF-kappaB-inducing kinase activity The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues. tmpzr1t_l9r_go_relaxed.owl positive regulation of NF-kappaB-inducing kinase activity|activation of NIK activity biological_process owl:Class GO:0140584 biolink:NamedThing chromatin extrusion motor activity A DNA translocase activity that folds chromosomal DNA and catalytically extends the newly formed loop, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl chromatin extrusion activity https://github.com/geneontology/go-ontology/issues/21647|https://github.com/geneontology/go-ontology/issues/20204 pg 2021-02-01T13:42:08Z molecular_function owl:Class GO:0010071 biolink:NamedThing root meristem specification The specification of a meristem which will give rise to a primary or lateral root. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021510 biolink:NamedThing spinal cord development The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047805 biolink:NamedThing cytidylate cyclase activity Catalysis of the reaction: CTP = 3',5'-cyclic CMP + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl CTP diphosphate-lyase (cyclizing; 3',5'-cyclic-CMP-forming)|cytidyl cyclase activity|3'5'-cyclic-CMP synthase activity|cytidylyl cyclase activity|CTP diphosphate-lyase (cyclizing)|3',5'-cyclic-CMP synthase activity EC:4.6.1.6|RHEA:14737|MetaCyc:CYTIDYLATE-CYCLASE-RXN|KEGG_REACTION:R00574 molecular_function owl:Class GO:0048136 biolink:NamedThing male germ-line cyst formation Formation of a group of interconnected cells derived from a single male gonial founder cell. tmpzr1t_l9r_go_relaxed.owl male germline cyst formation biological_process owl:Class GO:0048134 biolink:NamedThing germ-line cyst formation Formation of a group of interconnected cells derived from a single gonial founder cell. tmpzr1t_l9r_go_relaxed.owl germline cyst formation biological_process owl:Class GO:0044872 biolink:NamedThing lipoprotein localization Any process in which a lipoprotein is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-25T16:27:06Z biological_process owl:Class GO:0005703 biolink:NamedThing polytene chromosome puff A swelling at a site along the length of a polytene chromosome, thought to be the site of active transcription. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047766 biolink:NamedThing carbamoyl-serine ammonia-lyase activity Catalysis of the reaction: O-carbamoyl-L-serine + H(2)O + H(+) = CO(2) + 2 NH(4)(+) + pyruvate. tmpzr1t_l9r_go_relaxed.owl O-carbamoyl-L-serine ammonia-lyase (pyruvate-forming)|carbamoylserine deaminase activity|O-carbamoyl-L-serine ammonia-lyase (decarboxylating; pyruvate-forming)|O-carbamoyl-L-serine deaminase activity RHEA:15445|MetaCyc:CARBAMOYL-SERINE-AMMONIA-LYASE-RXN|KEGG_REACTION:R00213|EC:4.3.1.13 molecular_function owl:Class GO:0099056 biolink:NamedThing integral component of presynaptic membrane The component of the presynaptic membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of presynaptic plasma membrane cellular_component owl:Class GO:0061585 biolink:NamedThing hypocretin secretion, neurotransmission The controlled release of a peptide from a cell or a tissue in which the peptide acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl orexin secretion, neurotransmission dph 2013-12-26T10:09:37Z biological_process owl:Class GO:1901754 biolink:NamedThing vitamin D3 catabolic process The chemical reactions and pathways resulting in the breakdown of vitamin D3. tmpzr1t_l9r_go_relaxed.owl vitamin D3 breakdown|calciol breakdown|cholecalciferol catabolic process|vitamin D3 catabolism|vitamin D3 degradation|calciol catabolism|calciol degradation|cholecalciferol catabolism|calciol catabolic process yaf 2013-01-14T11:11:04Z biological_process owl:Class GO:0033726 biolink:NamedThing aldehyde ferredoxin oxidoreductase activity Catalysis of the reaction: an aldehyde + H2O + 2 oxidized ferredoxin = an acid + 2 H+ + 2 reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl AOR|tungsten-containing aldehyde ferredoxin oxidoreductase activity|aldehyde:ferredoxin oxidoreductase activity EC:1.2.7.5|RHEA:16421|MetaCyc:1.2.7.5-RXN molecular_function owl:Class GO:0042158 biolink:NamedThing lipoprotein biosynthetic process The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl lipoprotein anabolism|lipoprotein synthesis|lipoprotein formation|lipoprotein biosynthesis biological_process owl:Class GO:0015304 biolink:NamedThing glucose uniporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) = glucose(in). tmpzr1t_l9r_go_relaxed.owl galactose, glucose uniporter activity molecular_function owl:Class GO:0018632 biolink:NamedThing 4-nitrophenol 4-monooxygenase activity Catalysis of the reaction: p-nitrophenol + O2 + NADPH = H2O + NADP+ + nitrite + p-benzoquinone. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.167|RHEA:34327|UM-BBD_reactionID:r0226|MetaCyc:RXN-8739 molecular_function owl:Class GO:0102286 biolink:NamedThing ornithine N-delta-acetyltransferase activity Catalysis of the reaction: L-ornithinium(1+) = N(5)-acetyl-L-ornithine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12667 molecular_function owl:Class GO:1904736 biolink:NamedThing negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase Any process that stops, prevents or reduces the frequency, rate or extent of fatty acid beta-oxidation using acyl-CoA dehydrogenase. tmpzr1t_l9r_go_relaxed.owl inhibition of fatty acid beta-oxidation using acyl-CoA dehydrogenase|down regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase|down-regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase|downregulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase lb 2015-10-15T08:14:57Z biological_process owl:Class GO:0032945 biolink:NamedThing negative regulation of mononuclear cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of mononuclear cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of PBMC proliferation|negative regulation of peripheral blood mononuclear cell proliferation biological_process owl:Class GO:0033080 biolink:NamedThing immature T cell proliferation in thymus The expansion of an immature T cell population by cell division in the thymus. tmpzr1t_l9r_go_relaxed.owl thymic T cell proliferation|thymocyte proliferation|thymocyte cell proliferation biological_process owl:Class GO:0051663 biolink:NamedThing oocyte nucleus localization involved in oocyte dorsal/ventral axis specification The directed movement of the nucleus to a specific location within a cell during the establishment and maintenance of the dorsal/ventral axis of the oocyte. tmpzr1t_l9r_go_relaxed.owl oocyte nucleus localisation involved in oocyte dorsal/ventral axis specification|oocyte nucleus localization involved in oocyte dorsal-ventral axis specification|oocyte nucleus localization during oocyte axis determination|oocyte nucleus localization involved in oocyte dorsal/ventral axis determination|oocyte nucleus localization involved in oocyte dorsoventral axis specification|oocyte axis determination, oocyte nucleus localization|establishment and maintenance of oocyte nucleus localization during oocyte axis determination GO:0051662 biological_process owl:Class GO:0015083 biolink:NamedThing aluminum ion transmembrane transporter activity Enables the transfer of aluminum (Al) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl aluminium ion transporter activity|aluminum resistance permease activity|aluminium resistance permease activity GO:0015084 molecular_function owl:Class GO:0021986 biolink:NamedThing habenula development The progression of the habenula over time from its initial formation until its mature state. The habenula is the group of nuclei that makes up the stalk of the pineal gland. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046216 biolink:NamedThing indole phytoalexin catabolic process The chemical reactions and pathways resulting in the breakdown of indole phytoalexins, any indole compound produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl indole phytoalexin breakdown|indole phytoalexin catabolism|indole phytoalexin degradation biological_process owl:Class GO:0010030 biolink:NamedThing positive regulation of seed germination Any process that activates or increase the rate of seed germination. tmpzr1t_l9r_go_relaxed.owl up regulation of seed germination|activation of seed germination|stimulation of seed germination|up-regulation of seed germination|upregulation of seed germination biological_process owl:Class GO:0071373 biolink:NamedThing cellular response to luteinizing hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a luteinizing hormone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:16:02Z biological_process owl:Class GO:1904363 biolink:NamedThing negative regulation of calcitonin secretion Any process that stops, prevents or reduces the frequency, rate or extent of calcitonin secretion. tmpzr1t_l9r_go_relaxed.owl down regulation of calcitonin secretion|down-regulation of calcitonin secretion|downregulation of calcitonin secretion|inhibition of calcitonin secretion sl 2015-06-15T17:54:58Z biological_process owl:Class GO:1904644 biolink:NamedThing cellular response to curcumin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a curcumin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T20:38:17Z biological_process owl:Class GO:0034020 biolink:NamedThing neoxanthin synthase activity Catalysis of the reaction: all-trans-violaxanthin = all-trans-neoxanthin. tmpzr1t_l9r_go_relaxed.owl NSY|violaxanthin-neoxanthin isomerase (epoxide-opening) activity EC:5.3.99.9|RHEA:10128|KEGG_REACTION:R06948|MetaCyc:RXN1F-155 molecular_function owl:Class GO:0019240 biolink:NamedThing citrulline biosynthetic process The chemical reactions and pathways resulting in the formation of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins. tmpzr1t_l9r_go_relaxed.owl citrulline formation|citrulline synthesis|citrulline anabolism|citrulline biosynthesis MetaCyc:CITRULBIO-PWY biological_process owl:Class GO:0000052 biolink:NamedThing citrulline metabolic process The chemical reactions and pathways involving citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins. tmpzr1t_l9r_go_relaxed.owl citrulline metabolism biological_process owl:Class GO:0106328 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-seryl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:46884|EC:2.4.1.147 hjd 2020-09-30T13:46:37Z molecular_function owl:Class GO:0036213 biolink:NamedThing contractile ring contraction The process of an actomyosin ring getting smaller in diameter. tmpzr1t_l9r_go_relaxed.owl contractile ring constriction https://github.com/geneontology/go-ontology/issues/21855 This term can be used to annotate contraction of either bacterial or fungal contractile rings. bf 2012-04-26T02:58:18Z biological_process owl:Class GO:0033504 biolink:NamedThing floor plate development The progression of the floor plate over time from its initial formation until its mature state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046585 biolink:NamedThing enniatin biosynthetic process The chemical reactions and pathways resulting in the formation of enniatins, any of various cyclodepsipeptide antibiotics from Fusarium species that function as ionophores. tmpzr1t_l9r_go_relaxed.owl enniatin formation|enniatin synthesis|enniatin biosynthesis|enniatin anabolism biological_process owl:Class GO:0035697 biolink:NamedThing CD8-positive, alpha-beta T cell extravasation The migration of a CD8-positive, alpha-beta T cell from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-28T03:08:49Z biological_process owl:Class GO:0033975 biolink:NamedThing (R)-2-haloacid dehalogenase activity Catalysis of the reaction: (R)-2-haloacid + H2O = (S)-2-hydroxyacid + halide. tmpzr1t_l9r_go_relaxed.owl D-DEX|(R)-2-haloacid halidohydrolase activity|2-haloalkanoid acid halidohydrolase activity|D-2-haloacid dehalogenase activity|2-haloalkanoic acid dehalogenase activity EC:3.8.1.9|MetaCyc:3.8.1.9-RXN molecular_function owl:Class GO:0071709 biolink:NamedThing membrane assembly The aggregation, arrangement and bonding together of a set of components to form a membrane. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T11:19:17Z biological_process owl:Class GO:0042691 biolink:NamedThing positive regulation of crystal cell differentiation Any process that activates or increases the frequency, rate or extent of crystal cell differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of crystal cell differentiation|up-regulation of crystal cell differentiation|upregulation of crystal cell differentiation|activation of crystal cell differentiation|up regulation of crystal cell differentiation biological_process owl:Class GO:0035702 biolink:NamedThing monocyte homeostasis The process of regulating the proliferation and elimination of monocytes such that the total number of monocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-02T11:32:57Z biological_process owl:Class GO:0090650 biolink:NamedThing cellular response to oxygen-glucose deprivation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the deprivation of oxygen and glucose. tmpzr1t_l9r_go_relaxed.owl cellular response to OGD tb 2015-07-01T10:27:29Z biological_process owl:Class GO:0036294 biolink:NamedThing cellular response to decreased oxygen levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. tmpzr1t_l9r_go_relaxed.owl cellular response to lowered oxygen levels This term should be used when a decrease in oxygen levels is not considered a stress response. For a hypoxic stress response, consider instead 'cellular response to hypoxia ; GO:0071456'. bf 2012-07-20T01:08:40Z biological_process owl:Class GO:0043755 biolink:NamedThing alpha-ribazole phosphatase activity Catalysis of the reaction: alpha-ribazole 5'-phosphate + H(2)O = alpha-ribazole + phosphate. tmpzr1t_l9r_go_relaxed.owl CobC|alpha-ribazole-5'-P phosphatase activity|alpha-ribazole-5'-phosphate phosphohydrolase activity MetaCyc:RIBAZOLEPHOSPHAT-RXN|RHEA:24456|EC:3.1.3.73|KEGG_REACTION:R04594 GO:0019175 molecular_function owl:Class GO:0014030 biolink:NamedThing mesenchymal cell fate commitment The process in which a cell becomes committed to become a mesenchymal cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098560 biolink:NamedThing cytoplasmic side of late endosome membrane The side (leaflet) of the late endosome membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external side of late endosome membrane|external leaflet of late endosome membrane In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane. cellular_component owl:Class GO:0010009 biolink:NamedThing cytoplasmic side of endosome membrane The side (leaflet) of the endosome membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external leaflet of endosome membrane|external side of endosome membrane cellular_component owl:Class GO:0045879 biolink:NamedThing negative regulation of smoothened signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of smoothened by patched|inhibition of smoothened signaling pathway|negative regulation of smoothened signalling pathway|downregulation of smoothened signaling pathway|negative regulation of smoothened activity|negative regulation of smoothened receptor activity by patched|down-regulation of smoothened signaling pathway|down regulation of smoothened signaling pathway|negative regulation of hedgehog signaling pathway|negative regulation of hh signaling pathway GO:0045877 biological_process owl:Class GO:0008589 biolink:NamedThing regulation of smoothened signaling pathway Any process that modulates the frequency, rate or extent of smoothened signaling. tmpzr1t_l9r_go_relaxed.owl regulation of hedgehog signaling pathway|regulation of hh signaling pathway|regulation of smoothened signalling pathway|regulation of smoothened by patched|regulation of smoothened receptor activity by patched|regulation of smoothened activity GO:0043109|GO:0007226 biological_process owl:Class GO:0033877 biolink:NamedThing succinyl-CoA:(R)-benzylsuccinate CoA-transferase activity Catalysis of the reaction: (R)-2-benzylsuccinate + succinyl-CoA = (R)-2-benzylsuccinyl-CoA + succinate. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA:benzylsuccinate CoA-transferase activity|benzylsuccinate CoA-transferase activity|succinyl-CoA:(R)-2-benzylsuccinate CoA-transferase activity KEGG_REACTION:R05588|MetaCyc:RXN-864|UM-BBD_reactionID:r0329|EC:2.8.3.15|RHEA:16469 GO:0018728 molecular_function owl:Class GO:0018726 biolink:NamedThing 9-phenanthrol sulfotransferase activity Catalysis of the reaction: 9-phenanthrol + X-SO3(-) = HX + 9-phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl 9-phenanthrol sulphotransferase activity UM-BBD_reactionID:r0564 molecular_function owl:Class GO:0031996 biolink:NamedThing thioesterase binding Binding to a thioesterase. tmpzr1t_l9r_go_relaxed.owl thiolesterase binding molecular_function owl:Class GO:2000066 biolink:NamedThing positive regulation of cortisol biosynthetic process Any process that activates or increases the frequency, rate or extent of cortisol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cortisol biosynthesis|positive regulation of cortisol anabolism|positive regulation of cortisol synthesis|positive regulation of cortisol formation jl 2010-08-20T01:51:32Z biological_process owl:Class GO:2000064 biolink:NamedThing regulation of cortisol biosynthetic process Any process that modulates the frequency, rate or extent of cortisol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of cortisol synthesis|regulation of cortisol anabolism|regulation of cortisol biosynthesis|regulation of cortisol formation jl 2010-08-20T01:51:15Z biological_process owl:Class GO:0033585 biolink:NamedThing L-phenylalanine biosynthetic process from chorismate via phenylpyruvate The chemical reactions and pathways resulting in the formation of L-phenylalanine from other compounds, including chorismate, via the intermediate phenylpyruvate. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine formation from chorismate via phenylpyruvate|L-phenylalanine synthesis from chorismate via phenylpyruvate|L-phenylalanine biosynthesis from chorismate via phenylpyruvate|L-phenylalanine anabolism from chorismate via phenylpyruvate MetaCyc:PHESYN biological_process owl:Class GO:0002537 biolink:NamedThing nitric oxide production involved in inflammatory response The synthesis or release of nitric oxide following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl production of nitric oxide involved in acute inflammatory response|nitric oxide production involved in acute inflammatory response|production of nitric oxide involved in inflammatory response biological_process owl:Class GO:0002532 biolink:NamedThing production of molecular mediator involved in inflammatory response The synthesis or release of any molecular mediator of the inflammatory response following an inflammatory stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl production of molecular mediator involved in acute inflammatory response|production of cellular mediator of acute inflammation biological_process owl:Class GO:0033511 biolink:NamedThing luteolin biosynthetic process The chemical reactions and pathways resulting in the formation of luteolin, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one. tmpzr1t_l9r_go_relaxed.owl luteolin synthesis|luteolin biosynthesis|luteolin formation|luteolin anabolism MetaCyc:PWY-5060 biological_process owl:Class GO:1901780 biolink:NamedThing pentalenolactone biosynthetic process The chemical reactions and pathways resulting in the formation of pentalenolactone. tmpzr1t_l9r_go_relaxed.owl pentalenolactone biosynthesis|pentalenolactone formation|pentalenolactone anabolism|pentalenolactone synthesis yaf 2013-01-16T09:49:47Z biological_process owl:Class GO:0030976 biolink:NamedThing thiamine pyrophosphate binding Binding to thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. tmpzr1t_l9r_go_relaxed.owl TPP binding|diphosphothiamin binding|thiamin pyrophosphate binding|cocarboxylase binding|aneurine pyrophosphate binding molecular_function owl:Class GO:0001015 biolink:NamedThing snoRNA transcription by RNA polymerase II The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl snoRNA transcription from an RNA polymerase II promoter https://github.com/geneontology/go-ontology/issues/14854 krc 2010-08-18T07:21:18Z biological_process owl:Class GO:0022850 biolink:NamedThing serotonin-gated cation-selective channel activity Enables the transmembrane transfer of a cation by a channel that opens when serotonin has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine-gated receptor-channel|serotonin-activated cation-selective channel activity|serotonin-gated cation channel activity Reactome:R-HSA-9648983|Reactome:R-HSA-975311 Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'G protein-coupled serotonin receptor activity ; GO:0004993'. GO:0005232 molecular_function owl:Class GO:0033272 biolink:NamedThing myo-inositol hexakisphosphate transport The directed movement of myo-inositol hexakisphosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl phytate transport biological_process owl:Class GO:0033271 biolink:NamedThing myo-inositol phosphate transport The directed movement of any phosphorylated myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015952 biolink:NamedThing purine deoxyribonucleotide interconversion The chemical reactions and pathways by which a purine deoxyribonucleotide is synthesized from another purine deoxyribonucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031026 biolink:NamedThing glutamate synthase complex A complex that possesses glutamate synthase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043961 biolink:NamedThing succinyl-CoA:(R)-citramalate CoA-transferase activity Catalysis of the reaction: succinyl-CoA + (R)-citramalate = succinate + (R)-citramalyl-CoA. tmpzr1t_l9r_go_relaxed.owl L-carnitine dehydratase/bile acid-inducible protein F|succinyl-CoA:R-citramalate CoA transferase|succinyl-CoA:(R)-citramalate CoA transferase activity MetaCyc:RXN-8966|RHEA:38279|EC:2.8.3.20 molecular_function owl:Class GO:0044158 biolink:NamedThing host cell wall The rigid or semi-rigid envelope lying outside the host cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:09:23Z cellular_component owl:Class GO:0102774 biolink:NamedThing p-coumaroyltriacetic acid lactone synthase activity Catalysis of the reaction: 2 H+ + 4-coumaryl-CoA + 3 malonyl-CoA( <=> p-coumaroyltriacetic acid lactone + 4 coenzyme A + 3 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7822 molecular_function owl:Class GO:1990397 biolink:NamedThing queuosine salvage Any process which produces queuosine from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl pr 2014-06-10T14:56:12Z biological_process owl:Class GO:1905146 biolink:NamedThing lysosomal protein catabolic process Any cellular protein catabolic process that takes place in a lysosome. tmpzr1t_l9r_go_relaxed.owl proteolysis within lysosome|cellular protein degradation in lysosome|cellular protein catabolic process in lysosome|lysosomal protein degradation|lysosomal protein catabolism|cellular protein breakdown in lysosome|cellular protein catabolism in lysosome|lysosomal proteolysis Also consider annotating to the term 'autophagy ; GO:0006914' or one of its descendants. bf 2016-04-14T12:50:34Z biological_process owl:Class GO:0035141 biolink:NamedThing medial fin morphogenesis The process in which the anatomical structures of the medial fin are generated and organized. A medial fin is an unpaired fin of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming. tmpzr1t_l9r_go_relaxed.owl median fin morphogenesis|unpaired fin morphogenesis biological_process owl:Class GO:0045819 biolink:NamedThing positive regulation of glycogen catabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen. tmpzr1t_l9r_go_relaxed.owl up regulation of glycogen catabolic process|positive regulation of glycogen catabolism|positive regulation of glycogen breakdown|positive regulation of glycogenolysis|upregulation of glycogen catabolic process|up-regulation of glycogen catabolic process|positive regulation of glycogen degradation|activation of glycogen catabolic process|stimulation of glycogen catabolic process biological_process owl:Class GO:0008852 biolink:NamedThing exodeoxyribonuclease I activity Catalysis of the degradation of single-stranded DNA. It acts progressively in a 3' to 5' direction, releasing 5'-phosphomononucleotides. tmpzr1t_l9r_go_relaxed.owl E. coli exonuclease I activity|Escherichia coli exonuclease I|exonuclease I activity|E. coli exonuclease I EC:3.1.11.1|MetaCyc:3.1.11.1-RXN molecular_function owl:Class GO:0018047 biolink:NamedThing C-terminal peptidyl-phenylalanine amidation The formation of a C-terminal peptidyl-phenylalanine amide by hydrolysis and oxidation of an interior Phe-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0094 biological_process owl:Class GO:0010574 biolink:NamedThing regulation of vascular endothelial growth factor production Any process that modulates the frequency, rate, or extent of production of vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038013 biolink:NamedThing positive regulation of Wnt signaling pathway by Wnt receptor internalization Any process in which internalization of a Wnt receptor activates or increases the frequency, rate or extent of the Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of Wnt-activated signaling pathway by Wnt receptor internalization|positive regulation of Wnt receptor signaling pathway by Wnt receptor internalization|positive regulation of Wnt receptor signalling pathway by Wnt receptor endocytosis|positive regulation of Wnt receptor signaling pathway by LRP6 internalization|positive regulation of Wnt receptor signaling pathway by Frizzled internalization bf 2011-06-23T04:02:21Z biological_process owl:Class GO:0038010 biolink:NamedThing positive regulation of signal transduction by receptor internalization Any process in which the internalization of a signaling receptor activates or increases the frequency, rate or extent of signal transduction. Receptor internalization can enhance signaling by concentrating signaling molecules in one location, or by moving a ligand-activated receptor to the location of downstream signaling proteins. Endosomes for example can serve as important intracellular signaling platforms. tmpzr1t_l9r_go_relaxed.owl positive regulation of signaling pathway by receptor endocytosis bf 2011-06-23T03:37:10Z biological_process owl:Class GO:2000413 biolink:NamedThing regulation of fibronectin-dependent thymocyte migration Any process that modulates the frequency, rate or extent of fibronectin-dependent thymocyte migration. tmpzr1t_l9r_go_relaxed.owl regulation of fibronectin-dependent immature T cell migration|regulation of fibronectin-dependent immature T-cell migration|regulation of fibronectin-dependent immature T lymphocyte migration|regulation of fibronectin-dependent thymic lymphocyte migration|regulation of fibronectin-dependent immature T-lymphocyte migration mah 2011-02-23T01:38:08Z biological_process owl:Class GO:0032754 biolink:NamedThing positive regulation of interleukin-5 production Any process that activates or increases the frequency, rate, or extent of interleukin-5 production. tmpzr1t_l9r_go_relaxed.owl up regulation of interleukin-5 production|positive regulation of interleukin-5 biosynthetic process|stimulation of interleukin-5 production|activation of interleukin-5 production|positive regulation of IL-5 production|positive regulation of interleukin-5 secretion|up-regulation of interleukin-5 production|upregulation of interleukin-5 production GO:2000664|GO:0045407 biological_process owl:Class GO:1905844 biolink:NamedThing negative regulation of cellular response to gamma radiation Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to gamma ray|negative regulation of cellular response to gamma-ray photon|down-regulation of cellular response to gamma radiation|downregulation of cellular response to gamma ray|inhibition of cellular response to gamma radiation|inhibition of cellular response to gamma-ray photon|inhibition of cellular response to gamma ray|downregulation of cellular response to gamma-ray photon|down regulation of cellular response to gamma ray|down-regulation of cellular response to gamma-ray photon|down regulation of cellular response to gamma-ray photon|down regulation of cellular response to gamma radiation|downregulation of cellular response to gamma radiation|negative regulation of cellular response to gamma ray rz 2017-01-19T10:24:48Z biological_process owl:Class GO:0005940 biolink:NamedThing septin ring A tight ring-shaped structure that forms in the division plane at the site of cytokinesis; composed of members of the conserved family of filament-forming proteins called septins as well as septin-associated proteins. This type of septin structure is observed at the bud neck of budding fungal cells, at the site of cell division in animal cells, at the junction between the mother cell and a pseudohyphal projection, and also within hyphae of filamentous fungi at sites where a septum will form. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Septin_ring GO:0030481 cellular_component owl:Class GO:0060300 biolink:NamedThing regulation of cytokine activity Any process that modulates the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031739 biolink:NamedThing cholecystokinin receptor binding Binding to a cholecystokinin receptor. tmpzr1t_l9r_go_relaxed.owl cholecystokinin receptor ligand molecular_function owl:Class GO:2001061 biolink:NamedThing D-glycero-D-manno-heptose 7-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a D-glycero-D-manno-heptose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl D-glycero-D-manno-heptose 7-phosphate biosynthesis UniPathway:UPA00041 jl 2011-09-09T03:29:08Z biological_process owl:Class GO:2001284 biolink:NamedThing regulation of BMP secretion Any process that modulates the frequency, rate or extent of BMP secretion. tmpzr1t_l9r_go_relaxed.owl regulation of BMP protein secretion|regulation of bone morphogenetic protein secretion bf 2011-12-15T02:15:28Z biological_process owl:Class GO:0060933 biolink:NamedThing His-Purkinje system cell development The process whose specific outcome is the progression of a His-Purkinje cell over time, from its formation to the mature state. These cells form the fibers that regulate cardiac muscle contraction in the ventricles. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:15:02Z biological_process owl:Class GO:0102359 biolink:NamedThing daphnetin 4-O-beta-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 7,8-dihydroxycoumarin <=> UDP + 4-O- beta -D-glucosyl-daphnetin + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13450|EC:2.4.1.126 molecular_function owl:Class GO:0075509 biolink:NamedThing endocytosis involved in viral entry into host cell Any endocytosis that is involved in the uptake of a virus into a host cell. tmpzr1t_l9r_go_relaxed.owl viral penetration via endocytosis followed by endosome disruption|viral entry into host cell via endocytosis|virus endocytosis by host VZ:977 jl 2011-07-27T11:06:34Z biological_process owl:Class GO:0048368 biolink:NamedThing lateral mesoderm development The process whose specific outcome is the progression of the lateral mesoderm over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl lateral plate mesoderm development biological_process owl:Class GO:0018186 biolink:NamedThing peroxidase-heme linkage The covalent linkage of heme to peroxidase. tmpzr1t_l9r_go_relaxed.owl peroxidase-haem linkage RESID:AA0280|RESID:AA0279 biological_process owl:Class GO:0020010 biolink:NamedThing conoid A spiral cytoskeletal structure located at the apical end of the apical complex in some apicomplexan parasites. Fibers form a left-handed spiral, and are comprised of tubulin protofilaments organized in a ribbon-like structure that differs from the conventional tubular structure characteristic of microtubules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004997 biolink:NamedThing thyrotropin-releasing hormone receptor activity Combining with thyrotropin-releasing hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006033 biolink:NamedThing chitin localization A process in which chitin is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl chitin localisation|establishment and maintenance of chitin localization biological_process owl:Class GO:0033037 biolink:NamedThing polysaccharide localization Any process in which a polysaccharide is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl polysaccharide localisation biological_process owl:Class GO:0004859 biolink:NamedThing phospholipase inhibitor activity Binds to and stops, prevents or reduces the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a phospholipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052170 biolink:NamedThing suppression by symbiont of host innate immune response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host innate immunity|negative regulation by symbiont of host innate immunity|inhibition by symbiont of host innate immunity|negative regulation of host innate immune response|negative regulation by symbiont of host innate immune response|down-regulation by symbiont of host innate immunity|downregulation by symbiont of host innate immunity|negative regulation of innate immune response in other organism GO:0052309 biological_process owl:Class GO:0052167 biolink:NamedThing modulation by symbiont of host innate immune response Any process in which a symbiont modulates the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of innate immune response in other organism involved in symbiotic interaction|modulation of host innate immune response|modulation by symbiont of host innate immunity GO:0052306 biological_process owl:Class GO:0010036 biolink:NamedThing response to boron-containing substance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a boron-containing substance stimulus. tmpzr1t_l9r_go_relaxed.owl response to boron biological_process owl:Class GO:0010182 biolink:NamedThing sugar mediated signaling pathway The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes. tmpzr1t_l9r_go_relaxed.owl sugar mediated signalling biological_process owl:Class GO:1902997 biolink:NamedThing negative regulation of neurofibrillary tangle assembly Any process that stops, prevents or reduces the frequency, rate or extent of neurofibrillary tangle assembly. tmpzr1t_l9r_go_relaxed.owl negative regulation of star-shaped neurofibrillary tangle formation|negative regulation of flame-shaped neurofibrillary tangle assembly|down regulation of flame-shaped neurofibrillary tangle assembly|inhibition of flame-shaped neurofibrillary tangle formation|down regulation of star-shaped neurofibrillary tangle assembly|down-regulation of flame-shaped neurofibrillary tangle assembly|inhibition of flame-shaped neurofibrillary tangle assembly|down regulation of star-shaped neurofibrillary tangle formation|inhibition of neurofibrillary tangle assembly|down regulation of flame-shaped neurofibrillary tangle formation|inhibition of star-shaped neurofibrillary tangle formation|downregulation of flame-shaped neurofibrillary tangle assembly|down-regulation of star-shaped neurofibrillary tangle assembly|down-regulation of neurofibrillary tangle formation|down-regulation of star-shaped neurofibrillary tangle formation|negative regulation of star-shaped neurofibrillary tangle assembly|downregulation of star-shaped neurofibrillary tangle formation|downregulation of neurofibrillary tangle formation|down-regulation of flame-shaped neurofibrillary tangle formation|inhibition of star-shaped neurofibrillary tangle assembly|downregulation of flame-shaped neurofibrillary tangle formation|downregulation of star-shaped neurofibrillary tangle assembly|down-regulation of neurofibrillary tangle assembly|downregulation of neurofibrillary tangle assembly|down regulation of neurofibrillary tangle formation|down regulation of neurofibrillary tangle assembly|negative regulation of neurofibrillary tangle formation|inhibition of neurofibrillary tangle formation|negative regulation of flame-shaped neurofibrillary tangle formation sjp 2014-05-08T15:44:33Z biological_process owl:Class GO:0004750 biolink:NamedThing ribulose-phosphate 3-epimerase activity Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-ribulose-5-phosphate epimerase activity|ribulose 5-phosphate 3-epimerase activity|phosphoketopentose 3-epimerase activity|D-xylulose-5-phosphate 3-epimerase activity|D-ribulose-5-phosphate 3-epimerase activity|D-ribulose-5-P 3-epimerase activity|D-ribulose phosphate-3-epimerase activity|phosphoketopentose epimerase activity|xylulose phosphate 3-epimerase activity|erythrose-4-phosphate isomerase activity|phosphoribulose epimerase activity|pentose-5-phosphate 3-epimerase activity|erythrose-4-phosphate epimerase activity|D-ribulose 5-phosphate epimerase activity EC:5.1.3.1|Reactome:R-HSA-199803|KEGG_REACTION:R01529|RHEA:13677|Reactome:R-HSA-71303|MetaCyc:RIBULP3EPIM-RXN molecular_function owl:Class GO:0003857 biolink:NamedThing 3-hydroxyacyl-CoA dehydrogenase activity Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+). tmpzr1t_l9r_go_relaxed.owl 3-oxoacyl-thioester reductase activity|beta-hydroxyacylcoenzyme A dehydrogenase activity|beta-hydroxyacyl-coenzyme A synthetase activity|beta-hydroxyacyl dehydrogenase activity|L-3-hydroxyacyl coenzyme A dehydrogenase activity|L-3-hydroxyacyl CoA dehydrogenase activity|beta-keto-reductase activity|beta-hydroxybutyrylcoenzyme A dehydrogenase activity|beta-ketoacyl-CoA reductase Reactome:R-HSA-70837|Reactome:R-HSA-390251|Reactome:R-HSA-77342|Reactome:R-HSA-77312|Reactome:R-HSA-77254|Reactome:R-HSA-77303|Reactome:R-HSA-193508|UM-BBD_enzymeID:e0664|Reactome:R-HSA-77283|Reactome:R-HSA-77323|Reactome:R-HSA-193455|RHEA:22432|Reactome:R-HSA-508369|Reactome:R-HSA-389995|EC:1.1.1.35|Reactome:R-HSA-77331|Reactome:R-HSA-6809264|MetaCyc:OHACYL-COA-DEHYDROG-RXN See also 'long-chain-3-hydroxyacyl-CoA dehydrogenase activity ; GO:0016509'. molecular_function owl:Class GO:0047564 biolink:NamedThing 3-hydroxycyclohexanone dehydrogenase activity Catalysis of the reaction: 3-hydroxycyclohexanone + A = AH(2) + cyclohexane-1,3-dione. tmpzr1t_l9r_go_relaxed.owl 3-hydroxycyclohexanone:acceptor 1-oxidoreductase activity RHEA:15905|EC:1.1.99.26|KEGG_REACTION:R03212|MetaCyc:3-HYDROXYCYCLOHEXANONE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0047960 biolink:NamedThing glycine dehydrogenase activity Catalysis of the reaction: glycine + H2O + NAD+ = glyoxylate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl glycine:NAD+ oxidoreductase (deaminating) EC:1.4.1.10|RHEA:15721|MetaCyc:GLYCINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0051164 biolink:NamedThing L-xylitol metabolic process The chemical reactions and pathways involving L-xylitol, a five-carbon sugar alcohol derived from xylose by reduction of the carbonyl group. It is as sweet as sucrose and is used as a noncariogenic sweetner and as a sugar substitute in diabetic diets. tmpzr1t_l9r_go_relaxed.owl L-xylitol metabolism biological_process owl:Class GO:0005143 biolink:NamedThing interleukin-12 receptor binding Binding to an interleukin-12 receptor. tmpzr1t_l9r_go_relaxed.owl IL-12|interleukin-12 receptor ligand molecular_function owl:Class GO:0033882 biolink:NamedThing choloyl-CoA hydrolase activity Catalysis of the reaction: choloyl-CoA + H2O = cholate + CoA. tmpzr1t_l9r_go_relaxed.owl choloyl-coenzyme A thioesterase activity|peroxisomal acyl-CoA thioesterase 2 activity|chenodeoxycholoyl-coenzyme A thioesterase activity|PTE-2 RHEA:14541|EC:3.1.2.27|MetaCyc:3.1.2.27-RXN molecular_function owl:Class GO:2000419 biolink:NamedThing regulation of eosinophil extravasation Any process that modulates the frequency, rate or extent of eosinophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T01:46:47Z biological_process owl:Class GO:0034582 biolink:NamedThing 3-hydroxy-4-methyloctanoyl-CoA dehydrogenase activity Catalysis of the reaction: 3-hydroxy-4-methyloctanoyl-CoA = 4-methyl-3-oxooctanoyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0926 molecular_function owl:Class GO:2000403 biolink:NamedThing positive regulation of lymphocyte migration Any process that activates or increases the frequency, rate or extent of lymphocyte migration. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-23T10:46:06Z biological_process owl:Class GO:0018668 biolink:NamedThing 3-hydroxybenzoate 4-monooxygenase activity Catalysis of the reaction: 3-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 3-hydroxybenzoate 4-hydroxylase activity|3-hydroxybenzoate,NADPH:oxygen oxidoreductase (4-hydroxylating) KEGG_REACTION:R01628|UM-BBD_reactionID:r0153|EC:1.14.13.23|RHEA:11480|MetaCyc:3-HYDROXYBENZOATE-4-MONOOXYGENASE-RXN molecular_function owl:Class GO:0009719 biolink:NamedThing response to endogenous stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. biological_process owl:Class GO:1903328 biolink:NamedThing positive regulation of tRNA metabolic process Any process that activates or increases the frequency, rate or extent of tRNA metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of tRNA metabolism|up regulation of tRNA metabolic process|positive regulation of tRNA metabolism|upregulation of tRNA metabolism|up-regulation of tRNA metabolic process|up regulation of tRNA metabolism|upregulation of tRNA metabolic process|activation of tRNA metabolism|activation of tRNA metabolic process vw 2014-08-18T13:09:06Z biological_process owl:Class GO:0042461 biolink:NamedThing photoreceptor cell development Development of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. tmpzr1t_l9r_go_relaxed.owl photoreceptor morphogenesis GO:0046531 biological_process owl:Class GO:0016984 biolink:NamedThing ribulose-bisphosphate carboxylase activity Catalysis of the reaction: 2 (2R)-3-phosphoglycerate + 2 H+ = CO2 + D-ribulose 1,5-bisphosphate + H2O. tmpzr1t_l9r_go_relaxed.owl ribulose 1,5-bisphosphate carboxylase/oxygenase activity|ribulose diphosphate carboxylase/oxygenase activity|RuBisCO activity|RuBP carboxylase activity|D-ribulose 1,5-diphosphate carboxylase activity|D-ribulose-1,5-bisphosphate carboxylase activity|ribulose 1,5-diphosphate carboxylase/oxygenase activity|ribulose bisphosphate carboxylase/oxygenase activity|ribulose diphosphate carboxylase activity|ribulose 1,5-bisphosphate carboxylase activity|carboxydismutase activity|ribulose 1,5-diphosphate carboxylase activity|diphosphoribulose carboxylase activity RHEA:23124|MetaCyc:RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN|EC:4.1.1.39 molecular_function owl:Class GO:0045645 biolink:NamedThing positive regulation of eosinophil differentiation Any process that activates or increases the frequency, rate or extent of eosinophil differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of eosinophil differentiation|up-regulation of eosinophil differentiation|activation of eosinophil differentiation|stimulation of eosinophil differentiation|upregulation of eosinophil differentiation biological_process owl:Class GO:0022839 biolink:NamedThing ion gated channel activity Enables the transmembrane transfer of a solute by a channel that opens in response to a specific ion stimulus. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061666 biolink:NamedThing UFM1 ligase activity Catalysis of the transfer of UFM1 to a substrate protein via the reaction X-UFM1 + S --> X + S-UFM1, where X is either an E2 or E3 enzyme, the X-UFM1 linkage is a thioester bond, and the S-UFM1 linkage is an isopeptide bond between the C-terminal amino acid of UFM1 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T14:02:37Z molecular_function owl:Class GO:0080153 biolink:NamedThing negative regulation of reductive pentose-phosphate cycle Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of Calvin cycle|negative regulation of C3 photosynthesis dhl 2010-07-01T02:55:27Z biological_process owl:Class GO:0080152 biolink:NamedThing regulation of reductive pentose-phosphate cycle Any process that modulates the frequency, rate or extent of reductive pentose-phosphate cycle. tmpzr1t_l9r_go_relaxed.owl regulation of C3 photosynthesis|regulation of Calvin cycle dhl 2010-07-01T02:49:55Z biological_process owl:Class GO:0062104 biolink:NamedThing pumilio-response element binding Binding to a region of RNA containing a Pumilio-response element element. The consensus sequence for the element is UGUAAAUA. tmpzr1t_l9r_go_relaxed.owl PRE binding dph 2019-01-11T13:38:26Z molecular_function owl:Class GO:0140522 biolink:NamedThing fusogenic activity The activity of joining two lipid bilayers to form a single membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19942 pg 2020-09-24T09:45:21Z molecular_function owl:Class GO:0043589 biolink:NamedThing skin morphogenesis The process in which the anatomical structures of the skin are generated and organized. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000827 biolink:NamedThing mitochondrial RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs that takes place in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl RNA surveillance in mitochondria|RNA quality control in mitochondria|RNA quality control in mitochondrion|aberrant RNA catabolic process in mitochondrion|aberrant RNA catabolic process in mitochondria bf 2011-07-20T01:33:23Z biological_process owl:Class GO:0140116 biolink:NamedThing fluoride export across plasma membrane The directed movement of fluoride ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl pg 2017-10-24T14:51:01Z biological_process owl:Class GO:1903424 biolink:NamedThing fluoride transmembrane transport The process in which fluoride is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane fluoride transport|fluoride membrane transport mcc 2014-09-09T21:21:01Z biological_process owl:Class GO:0072505 biolink:NamedThing divalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of divalent inorganic anions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'di-, tri-valent inorganic anion homeostasis ; GO:0055061' (sibling term 'trivalent inorganic anion homeostasis' ; GO:0072506'). mah 2010-12-16T01:39:00Z biological_process owl:Class GO:2000010 biolink:NamedThing positive regulation of protein localization to cell surface Any process that activates or increases the frequency, rate or extent of protein localization to the cell surface. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localisation at cell surface|positive regulation of protein localization at cell surface jl 2010-08-04T01:43:56Z biological_process owl:Class GO:2000008 biolink:NamedThing regulation of protein localization to cell surface Any process that modulates the frequency, rate or extent of protein localization to the cell surface. tmpzr1t_l9r_go_relaxed.owl regulation of protein localization at cell surface|regulation of protein localisation at cell surface jl 2010-08-04T01:43:48Z biological_process owl:Class GO:2000237 biolink:NamedThing positive regulation of tRNA processing Any process that activates or increases the frequency, rate or extent of tRNA processing. tmpzr1t_l9r_go_relaxed.owl positive regulation of tRNA maturation mah 2010-11-10T12:15:17Z biological_process owl:Class GO:0001733 biolink:NamedThing galactosylceramide sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a galactosylceramide = adenosine 3',5'-bisphosphate + a galactosylceramidesulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:galactosylceramide 3'-sulfotransferase activity|3'-phosphoadenosine-5'-phosphosulfate-cerebroside sulfotransferase activity|galactosylceramide sulphotransferase activity|GSase|glycosphingolipid sulfotransferase activity|galactocerebroside sulfotransferase activity|cerebroside sulfotransferase activity|glycolipid sulfotransferase activity|galactolipid sulfotransferase activity EC:2.8.2.11|RHEA:43304|MetaCyc:GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:0050694 biolink:NamedThing galactose 3-O-sulfotransferase activity Catalysis of the reaction: N-acetyllactosamine + 3'-phosphoadenosine 5'-phosphosulfate = 3-sulfo-N-acetyllactosamine + adenosine 3',5'-bisphosphate. N-acetyllactosamine residues are found in a number of different carbohydrate types. N-acetyllactosamine can also be written as Gal-beta-(1,4)-GlcNAc. tmpzr1t_l9r_go_relaxed.owl galactose 3-O-sulphotransferase activity|Gal-3-O-sulfotransferase activity molecular_function owl:Class GO:0033164 biolink:NamedThing glycolipid 1,6-alpha-mannosyltransferase activity Catalysis of the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->6)-D-mannosyl-D-mannose linkage. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:oligosaccharide 6-alpha-D-mannosyltransferase activity|GDP-mannose:glycolipid 1,6-alpha-D-mannosyltransferase activity|initiation-specific alpha-1,6-mannosyltransferase activity|glycolipid 6-alpha-mannosyltransferase activity|GDP-mannose:oligosaccharide 1,6-alpha-D-mannosyltransferase activity MetaCyc:2.4.1.232-RXN|EC:2.4.1.232 molecular_function owl:Class GO:0000009 biolink:NamedThing alpha-1,6-mannosyltransferase activity Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->6) linkage. tmpzr1t_l9r_go_relaxed.owl 1,6-alpha-mannosyltransferase activity EC:2.4.1.232|Reactome:R-HSA-449718 molecular_function owl:Class GO:0032218 biolink:NamedThing riboflavin transport The directed movement of riboflavin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Riboflavin (vitamin B2) is a water-soluble B-complex vitamin, converted in the cell to FMN and FAD, cofactors required for the function of flavoproteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047351 biolink:NamedThing guanosine-triphosphate guanylyltransferase activity Catalysis of the reaction: 2 GTP = P(1),P(4)-bis(5'-guanosyl) tetraphosphate + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl GTP:GTP guanylyltransferase activity RHEA:18153|MetaCyc:2.7.7.45-RXN|EC:2.7.7.45|KEGG_REACTION:R00012 molecular_function owl:Class GO:0042322 biolink:NamedThing negative regulation of circadian sleep/wake cycle, REM sleep Any process that stops, prevents or reduces the duration or quality of rapid eye movement (REM) sleep. tmpzr1t_l9r_go_relaxed.owl down regulation of circadian sleep/wake cycle, REM sleep|inhibition of circadian sleep/wake cycle, REM sleep|downregulation of circadian sleep/wake cycle, REM sleep|negative regulation of REM sleep|down-regulation of circadian sleep/wake cycle, REM sleep biological_process owl:Class GO:0102666 biolink:NamedThing indole-3-acetyl-beta-4-D-glucose hydrolase activity Catalysis of the reaction: indole-3-acetyl-beta-4-D-glucose + H2O <=> H+ + indole-3-acetate + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-3164 molecular_function owl:Class GO:1990408 biolink:NamedThing calcitonin gene-related peptide receptor signaling pathway A series of molecular signals initiated by an extracellular calcitonin gene-related peptide (CGRP) combining with a calcitonin gene-related peptide receptor on the surface of the target cell. Calcitonin gene-related peptide receptors may form dimers, trimers or tetramers. tmpzr1t_l9r_go_relaxed.owl calcitonin-gene-related peptide receptor signaling pathway|CGRP receptor signaling pathway|calcitonin-gene-related polypeptide receptor signaling pathway An example of a protein that could be annotated to this term is CALCRL in human (Q16602) in PMID:10882736. bhm 2014-07-02T14:32:37Z biological_process owl:Class GO:0097646 biolink:NamedThing calcitonin family receptor signaling pathway A series of molecular signals initiated by an extracellular member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)) combining with a calcitonin family receptor on the surface of the target cell. Calcitonin family receptors may form dimers, trimers or tetramers; adrenomedullin and amylin receptors have only been observed as dimers so far. tmpzr1t_l9r_go_relaxed.owl calcitonin family receptor signalling pathway pr 2014-09-09T17:48:05Z biological_process owl:Class GO:0072126 biolink:NamedThing positive regulation of glomerular mesangial cell proliferation Any process that increases the frequency, rate or extent of glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T01:49:31Z biological_process owl:Class GO:0071486 biolink:NamedThing cellular response to high light intensity Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:13:23Z biological_process owl:Class GO:0001609 biolink:NamedThing G protein-coupled adenosine receptor activity Combining with adenosine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein-coupled A1 adenosine receptor activity|G protein coupled A2A adenosine receptor activity|adenosine receptor activity, G protein coupled|G-protein-coupled A2B adenosine receptor activity|G protein coupled A2B adenosine receptor activity|A2A adenosine receptor activity, G-protein coupled|A3 adenosine receptor activity, G protein coupled|G protein coupled A3 adenosine receptor activity|A3 adenosine receptor activity, G-protein coupled|A1 adenosine receptor activity, G protein coupled|A1 adenosine receptor activity, G-protein coupled|A2B adenosine receptor activity, G-protein coupled|P1 receptor|adenosine nucleotide receptor|G-protein-coupled A3 adenosine receptor activity|G-protein-coupled A2A adenosine receptor activity|A2A adenosine receptor activity, G protein coupled|A2B adenosine receptor activity, G protein coupled|G protein coupled adenosine receptor activity|G-protein coupled adenosine receptor activity|adenosine receptor activity, G-protein coupled|G protein coupled A1 adenosine receptor activity GO:0001611|GO:0001610|GO:0001613|GO:0008501|GO:0001612 molecular_function owl:Class GO:0043723 biolink:NamedThing 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity Catalysis of the reaction: 2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one + H2O = 5-amino-6-(5-phospho-D-ribosylamino)uracil + ammonia. tmpzr1t_l9r_go_relaxed.owl DRAP deaminase activity|2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase activity MetaCyc:RXN-10058 GO:0017173 molecular_function owl:Class GO:0072295 biolink:NamedThing specification of metanephric distal tubule identity The process in which the distal tubule of the metanephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T04:01:42Z biological_process owl:Class GO:1902616 biolink:NamedThing acyl carnitine transmembrane transport The process in which acyl carnitine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl O-acylcarnitine transmembrane transport pr 2014-01-10T11:07:30Z biological_process owl:Class GO:0090102 biolink:NamedThing cochlea development The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-18T11:42:15Z biological_process owl:Class GO:0071308 biolink:NamedThing cellular response to menaquinone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menaquinone (vitamin K2) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to menatetrenone|cellular response to vitamin K2 mah 2009-12-10T04:37:08Z biological_process owl:Class GO:0032572 biolink:NamedThing response to menaquinone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menaquinone (vitamin K2) stimulus. tmpzr1t_l9r_go_relaxed.owl response to menatetrenone|response to vitamin K2 biological_process owl:Class GO:1904071 biolink:NamedThing presynaptic active zone assembly The aggregation, arrangement and bonding together of a set of components to form a presynaptic active zone. The presynaptic active zone is a specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix. tmpzr1t_l9r_go_relaxed.owl pre-synaptic active zone assembly|pre-synaptic active zone component formation|pre-synaptic active zone component assembly|presynaptic active zone formation|pre-synaptic active zone formation pr 2015-03-20T10:36:27Z biological_process owl:Class GO:0031700 biolink:NamedThing adrenomedullin receptor binding Binding to an adrenomedullin receptor. tmpzr1t_l9r_go_relaxed.owl adrenomedullin receptor ligand molecular_function owl:Class GO:0015231 biolink:NamedThing 5-formyltetrahydrofolate transmembrane transporter activity Enables the transfer of 5-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 5-formyltetrahydrofolate transporter activity molecular_function owl:Class GO:0061519 biolink:NamedThing macrophage homeostasis The process of regulating the proliferation and elimination of macrophage cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:25:33Z biological_process owl:Class GO:0006848 biolink:NamedThing pyruvate transport The directed movement of pyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901195 biolink:NamedThing positive regulation of formation of translation preinitiation complex Any process that activates or increases the frequency, rate or extent of formation of translation preinitiation complex. tmpzr1t_l9r_go_relaxed.owl up regulation of formation of translation pre-initiation complex|activation of translation preinitiation complex assembly|up regulation of formation of translation preinitiation complex|up-regulation of formation of translation pre-initiation complex|activation of formation of translation pre-initiation complex|upregulation of formation of translation pre-initiation complex|up-regulation of formation of translation preinitiation complex|upregulation of formation of translation preinitiation complex|upregulation of translation preinitiation complex assembly|positive regulation of formation of translation pre-initiation complex|up-regulation of translation preinitiation complex assembly|positive regulation of translation preinitiation complex assembly|activation of formation of translation preinitiation complex|up regulation of translation preinitiation complex assembly ss 2012-07-25T02:31:50Z biological_process owl:Class GO:0008386 biolink:NamedThing cholesterol monooxygenase (side-chain-cleaving) activity Catalysis of the reaction: cholesterol + reduced adrenal ferredoxin + O2 = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl cholesterol 20-22-desmolase activity|cholesterol side-chain-cleaving enzyme activity|cholesterol,reduced-adrenal-ferredoxin:oxygen oxidoreductase (side-chain-cleaving)|Cyp11a1|steroid 20-22 desmolase activity|cytochrome p450(scc) activity|cholesterol desmolase activity|cytochrome P-450(scc) activity|steroid 20-22-lyase activity|enzymes, cholesterol side-chain-cleaving|cholesterol C20-22 desmolase activity|cholesterol side-chain cleavage enzyme activity|cytochrome P-450scc|desmolase, steroid 20-22|cholesterol C(20-22) desmolase activity|C27-side chain cleavage enzyme|cytochrome p450scc Reactome:R-HSA-193101|RHEA:35739|Reactome:R-HSA-193054|EC:1.14.15.6|MetaCyc:1.14.15.6-RXN|Reactome:R-HSA-193065 molecular_function owl:Class GO:0045795 biolink:NamedThing positive regulation of cell volume Any process that increases cell volume. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036089 biolink:NamedThing cleavage furrow formation Generation of the cleavage furrow, a shallow groove in the cell surface near the old metaphase plate that marks the site of cytokinesis. This process includes the recruitment and localized activation of signals such as RhoA at the site of the future furrow to ensure that furrowing initiates at the correct site in the cell. tmpzr1t_l9r_go_relaxed.owl cleavage furrow positioning Consider also annotating to 'establishment of contractile ring localization involved in cell cycle cytokinesis ; GO:0032188'. bf 2012-01-10T02:41:03Z biological_process owl:Class GO:0047896 biolink:NamedThing formaldehyde transketolase activity Catalysis of the reaction: D-xylulose 5-phosphate + formaldehyde = glyceraldehyde 3-phosphate + glycerone. tmpzr1t_l9r_go_relaxed.owl dihydroxyacetone synthase activity|D-xylulose-5-phosphate:formaldehyde glycolaldehydetransferase activity|DHAS activity|glycerone synthase activity MetaCyc:FORMALDEHYDE-TRANSKETOLASE-RXN|RHEA:24264|EC:2.2.1.3 molecular_function owl:Class GO:0016415 biolink:NamedThing octanoyltransferase activity Catalysis of the transfer of an octanoyl (CH3-[CH2]6-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.181 molecular_function owl:Class GO:0098710 biolink:NamedThing guanine import across plasma membrane The directed movement of guanine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl guanine import into cell dph 2012-12-06T14:52:43Z GO:0061489 biological_process owl:Class GO:1903716 biolink:NamedThing guanine transmembrane transport The process in which guanine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-08T12:18:27Z biological_process owl:Class GO:1901817 biolink:NamedThing beta-zeacarotene catabolic process The chemical reactions and pathways resulting in the breakdown of beta-zeacarotene. tmpzr1t_l9r_go_relaxed.owl beta-zeacarotene degradation|beta-zeacarotene breakdown|beta-zeacarotene catabolism yaf 2013-01-22T10:42:08Z biological_process owl:Class GO:0030943 biolink:NamedThing mitochondrion targeting sequence binding Binding to a mitochondrion targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial targeting sequence binding molecular_function owl:Class GO:0102507 biolink:NamedThing cyanidin 3-O-glucoside 7-O-glucosyltransferase (hydroxybenzoly-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> cyanidin 3,7-di-O-beta-D-glucoside betaine + 4-hydroxybenzoic acid + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.300|MetaCyc:RXN-14434 molecular_function owl:Class GO:0097332 biolink:NamedThing response to antipsychotic drug Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antipsychotic drug stimulus. Antipsychotic drugs are agents that control agitated psychotic behaviour, alleviate acute psychotic states, reduce psychotic symptoms, and exert a quieting effect. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:58:13Z biological_process owl:Class GO:0099530 biolink:NamedThing G protein-coupled receptor activity involved in regulation of postsynaptic membrane potential A G protein-coupled receptor activity occurring in the postsynaptic membrane that is part of a GPCR signaling pathway that positively regulates ion channel activity in the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor activity involved in regulation of postsynaptic membrane potential molecular_function owl:Class GO:0002894 biolink:NamedThing positive regulation of type II hypersensitivity Any process that activates or increases the frequency, rate, or extent of type II hypersensitivity. tmpzr1t_l9r_go_relaxed.owl upregulation of type II hypersensitivity|up regulation of type II hypersensitivity|activation of type II hypersensitivity|stimulation of type II hypersensitivity|up-regulation of type II hypersensitivity biological_process owl:Class GO:0072398 biolink:NamedThing signal transduction involved in cytokinesis checkpoint A signal transduction process that contributes to a cytokinesis checkpoint. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-08T03:22:21Z GO:0072419 biological_process owl:Class GO:0043956 biolink:NamedThing 3-hydroxypropionyl-CoA dehydratase activity Catalysis of the reaction: 3-hydroxypropionyl-CoA = acrylyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl acetyl-coenzyme A synthetase|acetyl-coenzyme A synthetase/GroES-like domain|AMP-dependent synthetase and ligase:Enoyl-CoA hydratase/isomerase|AMP-dependent synthetase and ligase|enoyl-CoA hydratase/isomerase|3-hydroxy propionyl-CoA dehydratase activity MetaCyc:RXN-6383|EC:4.2.1.116|RHEA:26518 Note that this function is one of the activities of the trifunctional enzyme propionyl-coenzyme A synthase. See PMID:11821399. molecular_function owl:Class GO:0046446 biolink:NamedThing purine alkaloid metabolic process The chemical reactions and pathways involving purine alkaloids, compounds derived from purine and composed of an N-containing double ring structure. tmpzr1t_l9r_go_relaxed.owl purine alkaloid metabolism biological_process owl:Class GO:0075312 biolink:NamedThing negative regulation of sporangium development Any process that stops, prevents, or reduces the frequency, rate or extent of sporangium development, a process that leads to the formation of sporangium, a single-celled or many-celled structure in which spores are produced, as in fungi, algae, mosses, and ferns, gymnosperms, angiosperms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044768 biolink:NamedThing NMS complex assembly The aggregation, arrangement and bonding together of a set of components to form an NMS complex. The NMS complex results from the association of two subcomplexes (known as MIND and Ndc80 in Schizosaccharomyces) and is required for kinetochore assembly. tmpzr1t_l9r_go_relaxed.owl NMS complex assembly involved in kinetochore assembly|Ndc80-MIND-Spc7 complex formation|KNL-1-Mis12-Ndc80 formation|KMN network assembly involved in chromosome segregation|KMN complex interaction involved in chromosome segregation|Ndc80-MIND-Spc7 complex assembly|KMN kinetochore network formation|NMS complex association involved in chromosome segregation|KNL-1-Mis12-Ndc80 assembly|KMN kinetochore network assembly|NMS complex formation jl 2012-12-19T14:44:56Z biological_process owl:Class GO:0007064 biolink:NamedThing mitotic sister chromatid cohesion The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043625 biolink:NamedThing delta DNA polymerase complex A multimeric DNA polymerase enzyme complex which differs in composition amongst species; in humans it is a heterotetramer of four subunits of approximately 125, 50, 68 and 12kDa, while in S. cerevisiae, it has three different subunits which form a heterotrimer, and the active enzyme is a dimer of this heterotrimer. Functions in DNA replication, mismatch repair and excision repair. tmpzr1t_l9r_go_relaxed.owl delta-DNA polymerase complex GO:0005659 cellular_component owl:Class GO:0032610 biolink:NamedThing interleukin-1 alpha production The appearance of interleukin-1 alpha due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-1 alpha secretion|IL-1 alpha production|interleukin-1 alpha biosynthetic process GO:0050719|GO:0050703 biological_process owl:Class GO:1904365 biolink:NamedThing regulation of chemokinesis Any process that modulates the frequency, rate or extent of chemokinesis. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-15T22:44:06Z biological_process owl:Class GO:0018614 biolink:NamedThing ethylbenzene dioxygenase activity Catalysis of the reaction: ethylbenzene + O2 + NADH + H+ = NAD+ + cis-2,3-dihydroxy-2,3-dihydroethylbenzene. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0247 molecular_function owl:Class GO:0018153 biolink:NamedThing isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0124 biological_process owl:Class GO:0120115 biolink:NamedThing Lsm2-8 complex A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular U6 or U6atac snRNAs, and also to unspliced transcripts localized within the nucleus. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-06T18:56:22Z cellular_component owl:Class GO:0042660 biolink:NamedThing positive regulation of cell fate specification Any process that activates or enables a cell to adopt a specific fate. tmpzr1t_l9r_go_relaxed.owl stimulation of cell fate specification|up regulation of cell fate specification|up-regulation of cell fate specification|upregulation of cell fate specification|activation of cell fate specification biological_process owl:Class GO:1901778 biolink:NamedThing pentalenolactone metabolic process The chemical reactions and pathways involving pentalenolactone. tmpzr1t_l9r_go_relaxed.owl pentalenolactone metabolism yaf 2013-01-16T09:49:38Z biological_process owl:Class GO:0071498 biolink:NamedThing cellular response to fluid shear stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:41:44Z biological_process owl:Class GO:0034405 biolink:NamedThing response to fluid shear stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900888 biolink:NamedThing negative regulation of pentadecane biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of pentadecane biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of pentadecane biosynthetic process|down regulation of pentadecane anabolism|downregulation of pentadecane biosynthesis|inhibition of pentadecane biosynthesis|downregulation of pentadecane anabolism|inhibition of pentadecane anabolism|downregulation of pentadecane formation|inhibition of pentadecane synthesis|down regulation of pentadecane synthesis|downregulation of pentadecane synthesis|downregulation of pentadecane biosynthetic process|down-regulation of pentadecane biosynthesis|down-regulation of pentadecane anabolism|inhibition of pentadecane formation|down regulation of pentadecane biosynthesis|down-regulation of pentadecane formation|down-regulation of pentadecane biosynthetic process|down regulation of pentadecane formation|negative regulation of pentadecane formation|inhibition of pentadecane biosynthetic process|negative regulation of pentadecane biosynthesis|down-regulation of pentadecane synthesis|negative regulation of pentadecane anabolism|negative regulation of pentadecane synthesis tt 2012-06-13T03:03:57Z biological_process owl:Class GO:0097253 biolink:NamedThing beta-hydroxybutyrate transmembrane transporter activity Enables the transfer of beta-hydroxybutyrate from one side of a membrane to the other. Beta-hydroxybutyrate is the conjugate base of (R)-3-hydroxybutyric acid. tmpzr1t_l9r_go_relaxed.owl (R)-3-hydroxybutyrate transmembrane transporter activity|3-hydroxybutanoic acid transmembrane transporter activity pr 2012-03-05T01:22:37Z molecular_function owl:Class GO:0061664 biolink:NamedThing Pup ligase activity Catalysis of the transfer of Pup to a substrate protein via the reaction X-Pup + S --> X + S-Pup, where X is either an E2 or E3 enzyme, the X-Pup linkage is a thioester bond, and the S-Pup linkage is an isopeptide bond between the C-terminal amino acid of Pup and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T13:59:09Z molecular_function owl:Class GO:0072496 biolink:NamedThing Pup transferase activity Catalysis of the transfer of Pup from one protein to another via the reaction X-Pup + Y --> Y-Pup + X, where both X-Pup and Y-Pup are covalent linkages. tmpzr1t_l9r_go_relaxed.owl Pup conjugating enzyme activity mah 2010-12-15T11:58:13Z molecular_function owl:Class GO:0034700 biolink:NamedThing allulose 6-phosphate 3-epimerase activity Catalysis of the reaction: D-allulose 6-phosphate = D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28426|MetaCyc:RXN0-304 molecular_function owl:Class GO:0102904 biolink:NamedThing germacrene C synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = germacrene C + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8561|EC:4.2.3.60|RHEA:28302 molecular_function owl:Class GO:0071216 biolink:NamedThing cellular response to biotic stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. tmpzr1t_l9r_go_relaxed.owl cellular response to biotic stress Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. mah 2009-12-03T01:09:08Z biological_process owl:Class GO:0098515 biolink:NamedThing detection of low humidity stimulus involved in sensory perception The series of events in which a low humidity stimulus is detected and converted into a molecular signal as a part of the sensory detection of low humidity. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:24:29Z biological_process owl:Class GO:0098517 biolink:NamedThing detection of low humidity The series of events in which low humidity is detected and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:27:18Z biological_process owl:Class GO:2001248 biolink:NamedThing regulation of ammonia assimilation cycle Any process that modulates the frequency, rate or extent of ammonia assimilation cycle. tmpzr1t_l9r_go_relaxed.owl regulation of glutamate metabolic process via glutamine and ammonia|regulation of glutamate metabolism via glutamine and ammonia rl 2011-12-01T10:08:21Z biological_process owl:Class GO:1905590 biolink:NamedThing fibronectin fibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a fibronectin fibril. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-25T12:04:50Z biological_process owl:Class GO:0106257 biolink:NamedThing glycerol-3-phosphate dehydrogenase [NADP+] activity Catalysis of the reaction: sn-glycerol 3-phosphate + NADP+ = glycerone phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:11096 hjd 2020-04-03T17:10:44Z molecular_function owl:Class GO:0047952 biolink:NamedThing glycerol-3-phosphate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: sn-glycerol 3-phosphate + NAD(P)+ = glycerone phosphate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate dehydrogenase (NAD(P)+) activity|L-glycerol-3-phosphate:NAD(P) oxidoreductase activity|sn-glycerol-3-phosphate:NAD(P)+ 2-oxidoreductase activity|glycerol phosphate dehydrogenase (nicotinamide adenine dinucleotide (phosphate)) activity MetaCyc:GLYC3PDEHYDROGBIOSYN-RXN|EC:1.1.1.94|KEGG_REACTION:R00844 bf 2013-09-30T10:37:46Z GO:0036439 molecular_function owl:Class GO:1990819 biolink:NamedThing actin fusion focus A focus at the mating projection tip where the cell wall is degraded during conjugation with cellular fusion. Actin filaments form an aster-like structure from this location. tmpzr1t_l9r_go_relaxed.owl al 2015-08-10T16:52:15Z cellular_component owl:Class GO:0043313 biolink:NamedThing regulation of neutrophil degranulation Any process that modulates the frequency, rate, or extent of neutrophil degranulation. tmpzr1t_l9r_go_relaxed.owl regulation of neutrophil granule exocytosis biological_process owl:Class GO:1903562 biolink:NamedThing microtubule bundle formation involved in mitotic spindle midzone assembly Any microtubule bundle formation that is involved in spindle midzone assembly involved in mitosis. tmpzr1t_l9r_go_relaxed.owl microtubule bundle formation involved in mitotic spindle midzone formation|microtubule bundling involved in spindle midzone formation involved in mitosis|microtubule bundling involved in mitotic spindle midzone formation|microtubule bundling involved in spindle midzone assembly involved in mitosis|microtubule bundling involved in spindle midzone biogenesis involved in mitosis|microtubule bundle formation involved in spindle midzone assembly involved in mitosis|microtubule bundling involved in mitotic spindle midzone assembly vw 2014-10-23T11:04:56Z biological_process owl:Class GO:0001578 biolink:NamedThing microtubule bundle formation A process that results in a parallel arrangement of microtubules. tmpzr1t_l9r_go_relaxed.owl microtubule bundling biological_process owl:Class GO:0031809 biolink:NamedThing H3 histamine receptor binding Binding to a H3 histamine receptor. tmpzr1t_l9r_go_relaxed.owl H3 histamine receptor ligand molecular_function owl:Class GO:0042176 biolink:NamedThing regulation of protein catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. tmpzr1t_l9r_go_relaxed.owl regulation of protein catabolism|regulation of protein degradation|regulation of protein breakdown biological_process owl:Class GO:0090228 biolink:NamedThing positive regulation of red or far-red light signaling pathway Any process that increases the rate, frequency or extent of the red or far-red signaling pathway, the series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. tmpzr1t_l9r_go_relaxed.owl positive regulation of phytochrome signaling pathway|positive regulation of red or far-red light signalling pathway tb 2010-01-19T04:03:29Z biological_process owl:Class GO:0000049 biolink:NamedThing tRNA binding Binding to a transfer RNA. tmpzr1t_l9r_go_relaxed.owl base pairing with tRNA GO:0000946 molecular_function owl:Class GO:1900211 biolink:NamedThing regulation of mesenchymal cell apoptotic process involved in metanephros development Any process that modulates the frequency, rate or extent of mesenchymal cell apoptotic process involved in metanephros development. tmpzr1t_l9r_go_relaxed.owl regulation of mesenchymal cell apoptosis involved in metanephros development yaf 2012-03-22T10:52:50Z biological_process owl:Class GO:0047610 biolink:NamedThing acetylsalicylate deacetylase activity Catalysis of the reaction: acetylsalicylate + H(2)O = acetate + H(+) + salicylate. tmpzr1t_l9r_go_relaxed.owl aspirin esterase activity|acetylsalicylic acid esterase activity|acetylsalicylate O-acetylhydrolase activity|aspirin hydrolase activity EC:3.1.1.55|KEGG_REACTION:R02942|MetaCyc:ACETYLSALICYLATE-DEACETYLASE-RXN|RHEA:11752 molecular_function owl:Class GO:0017189 biolink:NamedThing N-terminal peptidyl-alanine acetylation The acetylation of the N-terminal alanine of proteins; catalyzed by peptide alpha-N-acetyltransferase or other enzymes of this class, such as ribosomal-protein-alanine N-acetyltransferase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0041 See also the molecular function terms 'peptide alpha-N-acetyltransferase activity ; GO:0004596' and 'ribosomal-protein-alanine N-acetyltransferase activity ; GO:0008999'. biological_process owl:Class GO:0046814 biolink:NamedThing coreceptor-mediated virion attachment to host cell The process by which a virion attaches to a host cell by binding to a co-receptor on the host cell surface. tmpzr1t_l9r_go_relaxed.owl virion attachment, binding of host cell surface coreceptor biological_process owl:Class GO:1903234 biolink:NamedThing negative regulation of calcium ion-dependent exocytosis of neurotransmitter Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion-dependent exocytosis of neurotransmitter. tmpzr1t_l9r_go_relaxed.owl down regulation of calcium ion-dependent exocytosis of neurotransmitter|inhibition of calcium ion-dependent exocytosis of neurotransmitter|down-regulation of calcium ion-dependent exocytosis of neurotransmitter|downregulation of calcium ion-dependent exocytosis of neurotransmitter An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 (IMP) pad 2014-07-31T11:54:40Z biological_process owl:Class GO:0018121 biolink:NamedThing NAD(P)-asparagine ADP-ribosyltransferase activity Catalysis of the reaction: NAD(P)+ + L-asparagine = nicotinamide + N2-(ADP-D-ribosyl)-L-asparagine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006111 biolink:NamedThing regulation of gluconeogenesis Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. tmpzr1t_l9r_go_relaxed.owl regulation of glucose biosynthesis|regulation of gluconeogenesis involved in cellular glucose homeostasis|regulation of glucose biosynthetic process tb 2013-01-18T12:47:43Z GO:0090526 biological_process owl:Class GO:0042582 biolink:NamedThing azurophil granule Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid. tmpzr1t_l9r_go_relaxed.owl primary granule cellular_component owl:Class GO:0005766 biolink:NamedThing primary lysosome A lysosome before it has fused with a vesicle or vacuole. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1140587416 cellular_component owl:Class GO:2000200 biolink:NamedThing regulation of ribosomal subunit export from nucleus Any process that modulates the frequency, rate or extent of ribosomal subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of ribosomal subunit export from cell nucleus|regulation of ribosomal subunit-nucleus export|regulation of ribosomal subunit transport from nucleus to cytoplasm|regulation of ribosomal subunit export out of nucleus|regulation of ribosome export from nucleus mah 2010-10-26T10:44:27Z biological_process owl:Class GO:0085032 biolink:NamedThing modulation by symbiont of host I-kappaB kinase/NF-kappaB cascade Any process in which an organism modulates the frequency, rate or extent of host NF-kappaB-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host NF-kappaB-mediated signal transduction pathway jl 2010-07-27T02:13:37Z biological_process owl:Class GO:0005962 biolink:NamedThing mitochondrial isocitrate dehydrogenase complex (NAD+) Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity. tmpzr1t_l9r_go_relaxed.owl Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'isocitrate dehydrogenase (NAD+) activity ; GO:0004449'. cellular_component owl:Class GO:0072082 biolink:NamedThing specification of proximal tubule identity The process in which the proximal tubule of the kidney nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:44:34Z biological_process owl:Class GO:0035469 biolink:NamedThing determination of pancreatic left/right asymmetry Determination of the asymmetric location of the pancreas with respect to the left and right halves of the organism. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-22T10:47:15Z biological_process owl:Class GO:0008591 biolink:NamedThing regulation of Wnt signaling pathway, calcium modulating pathway Any process that modulates the frequency, rate or extent of the series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC). tmpzr1t_l9r_go_relaxed.owl regulation of frizzled-2 signalling pathway|regulation of frizzled-2 signaling pathway|regulation of Wnt receptor signaling pathway, calcium modulating pathway|regulation of Wnt-activated signaling pathway, calcium modulating pathway biological_process owl:Class GO:0052839 biolink:NamedThing inositol diphosphate tetrakisphosphate kinase activity Catalysis of the reaction: Catalysis of the reaction: ATP + inositol diphosphate tetrakisphosphate = ADP + inositol bisdiphosphate trisphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855193|Reactome:R-HSA-1855230 ai 2011-11-29T04:14:22Z molecular_function owl:Class GO:0110029 biolink:NamedThing negative regulation of meiosis I Any process that stops, prevents, or reduces the frequency, rate or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-12T18:47:33Z biological_process owl:Class GO:0018712 biolink:NamedThing 3-hydroxybutyryl-CoA thiolase activity Catalysis of the reaction: 3-hydroxy-5-oxohexanoyl-CoA + CoASH = 3-hydroxybutyryl-CoA + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0010|MetaCyc:R7-RXN molecular_function owl:Class GO:0010125 biolink:NamedThing mycothiol biosynthetic process The chemical reactions and pathways resulting in the formation of mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione. tmpzr1t_l9r_go_relaxed.owl mycothiol anabolism|mycothiol synthesis|mycothiol biosynthesis|mycothiol formation MetaCyc:PWY1G-0 biological_process owl:Class GO:1902101 biolink:NamedThing positive regulation of metaphase/anaphase transition of cell cycle Any process that activates or increases the frequency, rate or extent of metaphase/anaphase transition of cell cycle. tmpzr1t_l9r_go_relaxed.owl upregulation of metaphase/anaphase transition of cell cycle|activation of metaphase/anaphase transition of cell cycle|up regulation of metaphase/anaphase transition of cell cycle|up-regulation of metaphase/anaphase transition of cell cycle jl 2013-05-02T12:45:30Z biological_process owl:Class GO:0050398 biolink:NamedThing wax-ester hydrolase activity Catalysis of the reaction: a wax ester + H2O = a long-chain alcohol + a long-chain carboxylate. tmpzr1t_l9r_go_relaxed.owl jojoba wax esterase|wax-ester acylhydrolase activity|WEH MetaCyc:WAX-ESTER-HYDROLASE-RXN|RHEA:13577|EC:3.1.1.50 molecular_function owl:Class GO:0004686 biolink:NamedThing elongation factor-2 kinase activity Catalysis of the reaction: ATP + [elongation factor 2] = ADP + [elongation factor 2] phosphate. tmpzr1t_l9r_go_relaxed.owl eEF2K|Ca/CaM-kinase III activity|EF2K|CaM kinase III activity|elongation factor 2 kinase activity|eEF2 kinase activity|eukaryotic elongation factor 2 kinase activity|eEF-2 kinase activity|calmodulin-dependent protein kinase III activity|STK19|ATP:elongation factor 2 phosphotransferase activity EC:2.7.11.20|RHEA:21436|MetaCyc:2.7.11.20-RXN molecular_function owl:Class GO:0004683 biolink:NamedThing calmodulin-dependent protein kinase activity Calmodulin-dependent catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl caldesmon kinase (phosphorylating) activity|ATP:protein phosphotransferase (Ca2+/calmodulin-dependent) activity|microtubule-associated protein 2 kinase activity|CaMKKalpha|calmodulin-dependent kinase II activity|CaMKKbeta|CAM PKII|multifunctional calcium- and calmodulin-regulated protein kinase activity|calcium/calmodulin-dependent protein kinase type II activity|calmodulin-dependent protein kinase I activity|CaM kinase activity|Ca2+/calmodulin-dependent protein kinase IV activity|Ca2+/calmodulin-dependent microtubule-associated protein 2 kinase activity|Ca2+/CaM-dependent kinase activity|Ca2+/calmodulin-dependent protein kinase II activity|ATP:caldesmon O-phosphotransferase activity|CaM-regulated serine/threonine kinase activity|Ca2+/calmodulin-dependent protein kinase kinase beta activity|CaMKII|calcium- and calmodulin-dependent protein kinase activity|multifunctional calcium/calmodulin regulated protein kinase activity|CaM kinase II activity|CaMKI|Ca2+/calmodulin-dependent protein kinase kinase activity|Ca2+/calmodulin-dependent protein kinase 1 activity|CaMKIV|calmodulin regulated protein kinase activity|STK20|Ca2+/calmodulin-dependent protein kinase activity|calcium/calmodulin-dependent protein kinase activity EC:2.7.11.17|Reactome:R-HSA-9006992|Reactome:R-HSA-9617583|Reactome:R-HSA-111915|MetaCyc:2.7.11.17-RXN|Reactome:R-HSA-9619125|Reactome:R-HSA-442749|Reactome:R-HSA-111912|Reactome:R-HSA-9619783|Reactome:R-HSA-9618750|Reactome:R-HSA-9619355|Reactome:R-HSA-9619478|Reactome:R-HSA-416320|Reactome:R-HSA-9619367 These reactions require the presence of calcium-bound calmodulin. GO:0004685|GO:0004688|GO:0004684 molecular_function owl:Class GO:0004566 biolink:NamedThing beta-glucuronidase activity Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate. tmpzr1t_l9r_go_relaxed.owl ketodase activity|glucuronidase activity|exo-beta-D-glucuronidase activity|beta-D-glucuronoside glucuronosohydrolase activity|beta-glucuronide glucuronohydrolase activity Reactome:R-HSA-9036068|RHEA:17633|Reactome:R-HSA-9036070|Reactome:R-HSA-2318373|Reactome:R-HSA-1678854|Reactome:R-HSA-2162227|EC:3.2.1.31|MetaCyc:BETA-GLUCURONID-RXN|Reactome:R-HSA-2162226 molecular_function owl:Class GO:0071801 biolink:NamedThing regulation of podosome assembly Any process that modulates the frequency, rate or extent of podosome assembly. tmpzr1t_l9r_go_relaxed.owl Note that the assembly is regulated by several small GTPases of the Rab and Rho families. mah 2010-09-03T01:34:29Z biological_process owl:Class GO:0019843 biolink:NamedThing rRNA binding Binding to a ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl base pairing with rRNA GO:0000944 molecular_function owl:Class GO:0022855 biolink:NamedThing protein-N(PI)-phosphohistidine-glucose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + glucose(out) = protein histidine + glucose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl glucose PTS transporter activity molecular_function owl:Class GO:0070243 biolink:NamedThing regulation of thymocyte apoptotic process Any process that modulates the occurrence or rate of thymocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of immature T cell apoptosis|regulation of thymocyte apoptosis Note that a thymocyte is an immature T cell located in the thymus (CL:0000893). biological_process owl:Class GO:0000321 biolink:NamedThing re-entry into mitotic cell cycle after pheromone arrest The resumption of the mitotic cell division cycle by pheromone-arrested cells that have not mated. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000320 biolink:NamedThing re-entry into mitotic cell cycle The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060167 biolink:NamedThing regulation of adenosine receptor signaling pathway Any process that modulates the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl regulation of adenosine receptor signalling pathway biological_process owl:Class GO:0030160 biolink:NamedThing synaptic receptor adaptor activity The binding activity of a molecule that provides a physical support bridging a synaptic signaling receptor and a downstream signaling molecule. tmpzr1t_l9r_go_relaxed.owl postsynaptic density scaffold protein|GKAP/Homer scaffold protein|GKAP/Homer scaffold activity https://github.com/geneontology/go-ontology/issues/18409 molecular_function owl:Class GO:0030159 biolink:NamedThing signaling receptor complex adaptor activity The binding activity of a molecule that provides a physical support for the assembly of a multiprotein receptor signaling complex. tmpzr1t_l9r_go_relaxed.owl receptor signaling complex scaffold protein activity|receptor signaling complex adaptor activity|receptor signaling complex scaffold activity|receptor signalling complex scaffold activity|receptor signalling complex adaptor activity molecular_function owl:Class GO:0046692 biolink:NamedThing sperm competition Any process that contributes to the success of sperm fertilization in multiply-mated females. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sperm_competition biological_process owl:Class GO:1903304 biolink:NamedThing positive regulation of pyruvate kinase activity Any process that activates or increases the frequency, rate or extent of pyruvate kinase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of phosphoenolpyruvate kinase activity|up-regulation of phosphoenolpyruvate kinase activity|up-regulation of ATP:pyruvate 2-O-phosphotransferase activity|positive regulation of ATP:pyruvate 2-O-phosphotransferase activity|positive regulation of phosphoenol transphosphorylase activity|activation of phosphoenol transphosphorylase activity|upregulation of ATP:pyruvate 2-O-phosphotransferase activity|activation of phosphoenolpyruvate kinase activity|up-regulation of phosphoenol transphosphorylase activity|up regulation of phosphoenol transphosphorylase activity|upregulation of phosphoenol transphosphorylase activity|positive regulation of phosphoenolpyruvate kinase activity|upregulation of phosphoenolpyruvate kinase activity|upregulation of pyruvate kinase activity|activation of ATP:pyruvate 2-O-phosphotransferase activity|up regulation of pyruvate kinase activity|up-regulation of pyruvate kinase activity|activation of pyruvate kinase activity|up regulation of ATP:pyruvate 2-O-phosphotransferase activity mr 2014-08-15T23:26:06Z biological_process owl:Class GO:0102696 biolink:NamedThing cis-zeatin UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cis-zeatin = H+ + 9-(alpha-D-glucosyl)-cis-zeatin + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4734 molecular_function owl:Class GO:0003108 biolink:NamedThing negative regulation of the force of heart contraction by chemical signal Any process which decreases the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine. tmpzr1t_l9r_go_relaxed.owl negative regulation of the force of heart muscle contraction by chemical signal biological_process owl:Class GO:0060398 biolink:NamedThing regulation of growth hormone receptor signaling pathway Any process that modulates the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl regulation of growth hormone receptor signalling pathway biological_process owl:Class GO:0046925 biolink:NamedThing peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine The cross-linking of a cysteine residue to an L-phenylalanine residue to form 2-(S-L-cysteinyl)-D-phenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0341 biological_process owl:Class GO:0110129 biolink:NamedThing SHREC2 complex A histone deacetylase complex formed by the association of an HP1 protein with a SHREC complex. The SHREC2 complex is required for deacetylation of H3K14, and mediates transcriptional gene silencing by limiting RNA polymerase II access to heterochromatin. In fission yeast, the complex contains the SHREC subunits Clr1, Clr2, Clr3, and Mit1, and the HP1 protein Chp2. tmpzr1t_l9r_go_relaxed.owl kmv 2018-09-25T21:25:41Z cellular_component owl:Class GO:0050764 biolink:NamedThing regulation of phagocytosis Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033963 biolink:NamedThing cholesterol-5,6-oxide hydrolase activity Catalysis of the reactions: 5,6alpha-epoxy-5alpha-cholestan-3beta-ol + H2O = cholestane-3beta-5alpha,6beta-triol, and 5,6beta-epoxy-5beta-cholestan-3beta-ol + H2O = cholestane-3beta-5alpha,6beta-triol. tmpzr1t_l9r_go_relaxed.owl ChEH|cholesterol-epoxide hydrolase activity|5,6alpha-epoxy-5alpha-cholestan-3beta-ol hydrolase activity MetaCyc:RXN-8650|EC:3.3.2.11|MetaCyc:RXN-8651 molecular_function owl:Class GO:0140061 biolink:NamedThing 5-hydroxymethylcytosine dioxygenase activity Catalysis of the reaction: 5-hydroxymethylcytosine + 2-oxoglutarate + O2 = 5-formylcytosine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl 5hmC dioxygenase pg 2017-07-20T09:54:50Z molecular_function owl:Class GO:0051470 biolink:NamedThing ectoine transport The directed movement of ectoine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid) is a tetrahydropyrimidine commonly synthesized by halophilic bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102550 biolink:NamedThing 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 2-methyl-6-geranylgeranyl-1,4-benzoquinol <=> S-adenosyl-L-homocysteine + 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14917|EC:2.1.1.295|RHEA:38007 molecular_function owl:Class GO:0045712 biolink:NamedThing positive regulation of larval salivary gland boundary specification Any process that activates or increases the frequency, rate or extent of salivary gland determination in a larval organism. tmpzr1t_l9r_go_relaxed.owl stimulation of larval salivary gland determination|positive regulation of larval salivary gland determination|activation of larval salivary gland determination|upregulation of larval salivary gland determination|up regulation of larval salivary gland determination|up-regulation of larval salivary gland determination biological_process owl:Class GO:0048313 biolink:NamedThing Golgi inheritance The partitioning of Golgi apparatus between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl Golgi partitioning|Golgi division biological_process owl:Class GO:1904015 biolink:NamedThing cellular response to serotonin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a serotonin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T19:34:00Z biological_process owl:Class GO:0071868 biolink:NamedThing cellular response to monoamine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monoamine stimulus. A monoamine is any of a group of molecular messengers that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-13T02:38:52Z biological_process owl:Class GO:0004315 biolink:NamedThing 3-oxoacyl-[acyl-carrier-protein] synthase activity Catalysis of the reaction: acyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = 3-oxoacyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl 3-oxoacyl-[acyl-carrier protein] synthase activity|KAS I activity|acyl-malonyl acyl carrier protein-condensing enzyme activity|beta-ketoacyl-acyl-carrier-protein synthase II activity|KAS II|acyl-acyl-carrier-protein:malonyl-acyl-carrier-protein C-acyltransferase (decarboxylating)|beta-ketoacyl-[acyl carrier protein] synthase activity|beta-ketoacylsynthase activity|beta-ketoacyl-ACP synthase I activity|beta-ketoacyl synthetase activity|KASII|3-oxoacyl-acyl-carrier-protein synthase activity|fatty acid condensing enzyme activity|3-ketoacyl-acyl carrier protein synthase activity|beta-ketoacyl-acyl carrier protein synthetase activity|condensing enzyme activity|beta-ketoacyl-ACP synthetase activity|3-oxoacyl-acyl carrier protein synthase I activity|acyl-malonyl(acyl-carrier-protein)-condensing enzyme activity|KASI|ketoacyl-ACP synthase activity|beta-ketoacyl acyl carrier protein synthase activity|beta-ketoacyl-ACP synthase II activity|beta-ketoacyl-acyl-carrier-protein synthase I|3-oxoacyl-ACP synthase activity|3-oxoacyl:ACP synthase I|beta-ketoacyl-acyl carrier protein synthase activity https://github.com/geneontology/go-ontology/issues/21801 RHEA:22836|EC:2.3.1.41|MetaCyc:3-OXOACYL-ACP-SYNTH-RXN|MetaCyc:2.3.1.179-RXN GO:0033817 molecular_function owl:Class GO:0071161 biolink:NamedThing cyanophycin synthetase activity (L-arginine-adding) Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n-L-Asp + L-arginine = ADP + phosphate + [L-Asp(4-L-Arg)]n+1. tmpzr1t_l9r_go_relaxed.owl EC:6.3.2.30|RHEA:23888 mah 2009-11-17T05:19:54Z molecular_function owl:Class GO:0061381 biolink:NamedThing cell migration in diencephalon The orderly movement of a cell that will reside in the diencephalon. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:54:27Z biological_process owl:Class GO:0021885 biolink:NamedThing forebrain cell migration The orderly movement of a cell from one site to another at least one of which is located in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030797 biolink:NamedThing 24-methylenesterol C-methyltransferase activity Catalysis of the reaction: 24-methylidenelophenol + S-adenosyl-L-methionine(1+) = (Z)-24-ethylidenelophenol + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:24-methylenelophenol C-methyltransferase activity|24-methylenelophenol C-241-methyltransferase activity|SMT(2) activity|SMT2|24-methylenelophenol C-24(1)-methyltransferase activity RHEA:21044|KEGG_REACTION:R05776|MetaCyc:2.1.1.143-RXN|EC:2.1.1.143 molecular_function owl:Class GO:0048401 biolink:NamedThing negative regulation of intermediate mesodermal cell fate specification Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl downregulation of intermediate mesodermal cell fate specification|down regulation of intermediate mesodermal cell fate specification|inhibition of intermediate mesodermal cell fate specification|down-regulation of intermediate mesodermal cell fate specification biological_process owl:Class GO:0033346 biolink:NamedThing asparagine catabolic process via 2-oxosuccinamate The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-oxosuccinamate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-4002 biological_process owl:Class GO:0035843 biolink:NamedThing endonuclear canal A membrane-bound structure present in the nucleus of a spermatozoon. There is variation in the number of endonuclear canals between sperm of different organisms, and some species lack these structures altogether. The endonuclear canal may provide a supporting role for the sperm nucleus, and originates during spermiogenesis from an invagination of the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-06T01:45:03Z cellular_component owl:Class GO:0043814 biolink:NamedThing phospholactate guanylyltransferase activity Catalysis of the reaction: 2-phospho-(S)-lactate + GTP = lactyl-2-diphospho-5'-guanosine + diphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8077|EC:2.7.7.68|RHEA:30519 molecular_function owl:Class GO:2001116 biolink:NamedThing methanopterin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of a methanopterin. tmpzr1t_l9r_go_relaxed.owl methanopterin biosynthesis jl 2011-10-11T11:55:00Z biological_process owl:Class GO:0004609 biolink:NamedThing phosphatidylserine decarboxylase activity Catalysis of the reaction: H(+) + phosphatidyl-L-serine = CO(2) + phosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl phosphatidyl-L-serine carboxy-lyase activity|phosphatidyl-L-serine carboxy-lyase (phosphatidylethanolamine-forming)|PS decarboxylase activity RHEA:20828|Reactome:R-HSA-1483212|MetaCyc:PHOSPHASERDECARB-RXN|KEGG_REACTION:R02055|EC:4.1.1.65 molecular_function owl:Class GO:0009911 biolink:NamedThing positive regulation of flower development Any process that activates or increases the frequency, rate or extent of flower development. tmpzr1t_l9r_go_relaxed.owl activation of flower development|up-regulation of flower development|up regulation of flower development|upregulation of flower development|stimulation of flower development biological_process owl:Class GO:1902055 biolink:NamedThing positive regulation of neosartoricin biosynthetic process Any process that activates or increases the frequency, rate or extent of neosartoricin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of neosartoricin synthesis|activation of neosartoricin biosynthetic process|positive regulation of neosartoricin synthesis|up regulation of neosartoricin formation|upregulation of neosartoricin biosynthesis|positive regulation of neosartoricin formation|activation of neosartoricin anabolism|up-regulation of neosartoricin anabolism|up-regulation of neosartoricin formation|up regulation of neosartoricin biosynthesis|up regulation of neosartoricin synthesis|up regulation of neosartoricin anabolism|upregulation of neosartoricin biosynthetic process|upregulation of neosartoricin formation|activation of neosartoricin formation|up-regulation of neosartoricin biosynthetic process|up-regulation of neosartoricin synthesis|positive regulation of neosartoricin anabolism|upregulation of neosartoricin anabolism|activation of neosartoricin biosynthesis|up-regulation of neosartoricin biosynthesis|positive regulation of neosartoricin biosynthesis|upregulation of neosartoricin synthesis|up regulation of neosartoricin biosynthetic process di 2013-04-11T15:46:20Z biological_process owl:Class GO:0002513 biolink:NamedThing tolerance induction to self antigen Tolerance induction directed at self antigens. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000802 biolink:NamedThing transverse filament A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990385 biolink:NamedThing meiotic spindle midzone The area in the center of the meiotic spindle where the spindle microtubules from opposite poles overlap. tmpzr1t_l9r_go_relaxed.owl kmv 2014-05-29T20:52:44Z cellular_component owl:Class GO:0006119 biolink:NamedThing oxidative phosphorylation The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis. tmpzr1t_l9r_go_relaxed.owl respiratory-chain phosphorylation Wikipedia:Oxidative_phosphorylation biological_process owl:Class GO:0098632 biolink:NamedThing cell-cell adhesion mediator activity The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to another cell. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion molecule|protein binding involved in cell-cell adhesion molecular_function owl:Class GO:0047097 biolink:NamedThing phylloquinone monooxygenase (2,3-epoxidizing) activity Catalysis of the reaction: AH(2) + O(2) + phylloquinone = 2,3-epoxyphylloquinone + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl vitamin K 2,3-epoxidase activity|vitamin K epoxidase activity|vitamin K1 epoxidase activity|phylloquinone epoxidase activity|phylloquinone,hydrogen-donor:oxygen oxidoreductase (2,3-epoxidizing) KEGG_REACTION:R03510|RHEA:16745|MetaCyc:1.14.99.20-RXN|EC:1.14.99.20 molecular_function owl:Class GO:1904676 biolink:NamedThing negative regulation of somatic stem cell division Any process that stops, prevents or reduces the frequency, rate or extent of somatic stem cell division. tmpzr1t_l9r_go_relaxed.owl inhibition of somatic stem cell renewal|down regulation of somatic stem cell renewal|down-regulation of somatic stem cell division|down regulation of somatic stem cell division|inhibition of somatic stem cell division|downregulation of somatic stem cell division|downregulation of somatic stem cell renewal|down-regulation of somatic stem cell renewal|negative regulation of somatic stem cell renewal rph 2015-09-14T08:47:28Z biological_process owl:Class GO:2000635 biolink:NamedThing negative regulation of primary miRNA processing Any process that stops, prevents or reduces the frequency, rate or extent of primary microRNA processing. tmpzr1t_l9r_go_relaxed.owl negative regulation of pri-miRNA processing|negative regulation of primary microRNA processing dph 2011-04-18T03:50:53Z biological_process owl:Class GO:0102973 biolink:NamedThing norsolorinate anthrone synthase activity Catalysis of the reaction: 7 malonyl-CoA + 5 H+ + a hexanoyl-[acyl-carrier-protein] = norsolorinate anthrone + 7 coenzyme A + 7 carbon dioxide + 2 H2O + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl norsolorinic acid synthase RHEA:35179|EC:2.3.1.221|MetaCyc:RXN-9479 molecular_function owl:Class GO:0008783 biolink:NamedThing agmatinase activity Catalysis of the reaction: agmatine + H(2)O = putrescine + urea. tmpzr1t_l9r_go_relaxed.owl agmatine amidinohydrolase|SpeB|agmatine ureohydrolase activity Reactome:R-HSA-350604|KEGG_REACTION:R01157|MetaCyc:AGMATIN-RXN|RHEA:13929|EC:3.5.3.11 molecular_function owl:Class GO:0004368 biolink:NamedThing glycerol-3-phosphate dehydrogenase (quinone) activity Catalysis of the reaction: sn-glycerol 3-phosphate + a quinone = glycerone phosphate + a quinol. tmpzr1t_l9r_go_relaxed.owl flavin-linked glycerol-3-phosphate dehydrogenase|FAD-dependent glycerol-3-phosphate dehydrogenase|sn-glycerol-3-phosphate dehydrogenase activity|L-glycerophosphate dehydrogenase activity|glycerol-3-phosphate CoQ reductase|sn-glycerol-3-phosphate:quinone oxidoreductase activity|glycerophosphate dehydrogenase activity MetaCyc:RXN-9927|EC:1.1.5.3|RHEA:18977|MetaCyc:RXN0-5260|Reactome:R-HSA-188467 Note that enzymes classified as EC:1.1.5.3 have several activities. They should be annotated with the terms GO:0004368, GO:0052590 and GO:0052591. molecular_function owl:Class GO:0150158 biolink:NamedThing positive regulation of interleukin-34 production Any process that activates or increases the frequency, rate or extent of interleukin-34 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-34 biosynthetic process bc 2020-01-06T16:31:00Z GO:0150161 biological_process owl:Class GO:1905154 biolink:NamedThing negative regulation of membrane invagination Any process that stops, prevents or reduces the frequency, rate or extent of membrane invagination. tmpzr1t_l9r_go_relaxed.owl inhibition of membrane invagination|downregulation of membrane invagination|down-regulation of membrane invagination|down regulation of membrane invagination bf 2016-04-18T15:44:04Z biological_process owl:Class GO:0048325 biolink:NamedThing negative regulation of axial mesodermal cell fate determination Any process that stops, prevents, or reduces the frequency, rate or extent of axial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl downregulation of axial mesodermal cell fate determination|down regulation of axial mesodermal cell fate determination|down-regulation of axial mesodermal cell fate determination|inhibition of axial mesodermal cell fate determination biological_process owl:Class GO:0048324 biolink:NamedThing regulation of axial mesodermal cell fate determination Any process that modulates the frequency, rate or extent of axial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010902 biolink:NamedThing positive regulation of very-low-density lipoprotein particle remodeling Any process that increases the rate, frequency or extent of very-low-density lipoprotein particle remodeling. Very-low-density lipoprotein particle remodeling is the acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid. tmpzr1t_l9r_go_relaxed.owl positive regulation of VLDL remodeling biological_process owl:Class GO:0016679 biolink:NamedThing oxidoreductase activity, acting on diphenols and related substances as donors Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors EC:1.10.-.- molecular_function owl:Class GO:0102302 biolink:NamedThing mycinamicin VI 2''-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + mycinamicin VI <=> S-adenosyl-L-homocysteine + mycinamicin III(1+) + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12801|RHEA:31643|EC:2.1.1.238 molecular_function owl:Class GO:1904149 biolink:NamedThing regulation of microglial cell mediated cytotoxicity Any process that modulates the frequency, rate or extent of microglial cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl nc 2015-04-15T08:05:29Z biological_process owl:Class GO:0018574 biolink:NamedThing 2,6-dichloro-p-hydroquinone 1,2-dioxygenase activity Catalysis of the reaction: 2,6-dichlorohydroquinone + O2 + H2O = HCl + 2 H+ + 2-chloromaleylacetate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_enzymeID:e0422 molecular_function owl:Class GO:0007415 biolink:NamedThing defasciculation of motor neuron axon Separation of a motor axon away from a bundle of axons known as a fascicle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007414 biolink:NamedThing axonal defasciculation Separation of axons away from a bundle of axons known as a fascicle. tmpzr1t_l9r_go_relaxed.owl defasciculation of neuron biological_process owl:Class GO:1905363 biolink:NamedThing positive regulation of endosomal vesicle fusion Any process that activates or increases the frequency, rate or extent of endosomal vesicle fusion. tmpzr1t_l9r_go_relaxed.owl up regulation of endosome vesicle fusion|positive regulation of endosome vesicle fusion|upregulation of endosome vesicle fusion|up-regulation of endosome vesicle fusion|up regulation of endosomal vesicle fusion|activation of endosomal vesicle fusion|activation of endosome vesicle fusion|up-regulation of endosomal vesicle fusion|upregulation of endosomal vesicle fusion bc 2016-08-16T11:40:51Z biological_process owl:Class GO:0055047 biolink:NamedThing generative cell mitosis The process in which the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097307 biolink:NamedThing response to farnesol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a farnesol stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-15T03:51:31Z biological_process owl:Class GO:0072541 biolink:NamedThing peroxynitrite reductase activity Catalysis of the reaction: 2 R-SH + ONOO- = R-SS-R + NO2- + H2O. tmpzr1t_l9r_go_relaxed.owl peroxynitritase activity Note that this activity is usually associated in vivo with an NADPH-dependent disulfide reductase activity, so that catalysis of the reduction of peroxynitrite to nitrite involves the possible creation of oxygen or water, using NADPH as reduction equivalent. mah 2011-01-17T11:43:37Z molecular_function owl:Class GO:0097309 biolink:NamedThing cap1 mRNA methylation Methylation of the ribose of the first nucleotide of a 5'-capped mRNA. tmpzr1t_l9r_go_relaxed.owl cap1 mRNA capping pr 2012-05-23T04:03:13Z biological_process owl:Class GO:0036451 biolink:NamedThing cap mRNA methylation Methylation of the 2'-O-ribose of the first or second transcribed nucleotide of a 5'-capped mRNA. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-06T14:36:00Z biological_process owl:Class GO:0046372 biolink:NamedThing D-arabinose metabolic process The chemical reactions and pathways involving D-arabinose, the D-enantiomer of arabino-pentose. D-arabinose occurs in plant glycosides and is a constituent of arabinonucleosides. tmpzr1t_l9r_go_relaxed.owl D-arabinose metabolism biological_process owl:Class GO:0046360 biolink:NamedThing 2-oxobutyrate biosynthetic process The chemical reactions and pathways resulting in the formation of 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2. tmpzr1t_l9r_go_relaxed.owl 2-oxobutyrate synthesis|alpha-ketobutyrate biosynthesis|2-oxobutyrate anabolism|2-oxobutyrate formation|2-oxobutyrate biosynthesis|alpha-ketobutyrate biosynthetic process biological_process owl:Class GO:0046361 biolink:NamedThing 2-oxobutyrate metabolic process The chemical reactions and pathways involving 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2. tmpzr1t_l9r_go_relaxed.owl alpha-ketobutyrate metabolism|alpha-ketobutyrate metabolic process|2-oxobutyrate metabolism biological_process owl:Class GO:0050390 biolink:NamedThing valine decarboxylase activity Catalysis of the reaction: L-valine + H(+) = 2-methylpropanamine + CO(2). tmpzr1t_l9r_go_relaxed.owl leucine decarboxylase activity|L-valine carboxy-lyase (2-methylpropanamine-forming)|L-valine carboxy-lyase activity EC:4.1.1.14|KEGG_REACTION:R01437|MetaCyc:VALINE-DECARBOXYLASE-RXN|RHEA:18989|UM-BBD_reactionID:r1052 molecular_function owl:Class GO:0043568 biolink:NamedThing positive regulation of insulin-like growth factor receptor signaling pathway Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of IGF receptor signaling pathway|stimulation of insulin-like growth factor receptor signaling pathway|up regulation of insulin-like growth factor receptor signaling pathway|upregulation of insulin-like growth factor receptor signaling pathway|up-regulation of insulin-like growth factor receptor signaling pathway|positive regulation of IGF receptor signalling pathway|positive regulation of insulin-like growth factor receptor signalling pathway|activation of insulin-like growth factor receptor signaling pathway biological_process owl:Class GO:0097696 biolink:NamedThing receptor signaling pathway via STAT An intracellular signal transduction process in which STAT proteins (Signal Transducers and Activators of Transcription) convey a signal to trigger a change in the activity or state of a cell. The STAT cascade begins with receptor activation followed by activation of STAT proteins by kinases. It proceeds through STA dimerization and subsequent nuclear translocation of STAT proteins, and ends with regulation of target gene expression by STAT proteins. tmpzr1t_l9r_go_relaxed.owl kinase activated-STAT cascade|STAT signalling pathway|kinase-STAT cascade In most species, STAT proteins are activated by members of the JAK (Janus Activated Kinase) family of tyrosine kinases; the term GO:0007259 'JAK-STAT cascade' describes this specificity. In other cases, such as D. discoideum, no JAK orthologs are known, and STAT proteins are activated by tyrosine kinase-like proteins. pr 2015-12-22T10:40:14Z biological_process owl:Class GO:0008475 biolink:NamedThing procollagen-lysine 5-dioxygenase activity Catalysis of the reaction: procollagen L-lysine + 2-oxoglutarate + O2 = procollagen 5-hydroxy-L-lysine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl procollagen-lysine,2-oxoglutarate 5-dioxygenase activity|lysine,2-oxoglutarate 5-dioxygenase activity|collagen lysine hydroxylase activity|protocollagen lysine hydroxylase activity|protocollagen lysine dioxygenase activity|lysine-2-oxoglutarate dioxygenase activity|lysylprotocollagen dioxygenase activity|lysine hydroxylase activity|procollagen-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)|protocollagen lysyl hydroxylase activity|lysyl hydroxylase activity EC:1.14.11.4|Reactome:R-HSA-1981104|MetaCyc:PROCOLLAGEN-LYSINE-5-DIOXYGENASE-RXN|RHEA:16569 molecular_function owl:Class GO:0070815 biolink:NamedThing peptidyl-lysine 5-dioxygenase activity Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 5-hydroxy-L-lysine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl peptidyl-lysine, 2-oxoglutarate: oxygen oxidoreductase activity|lysyl hydroxylase activity|peptidyllysine, 2-oxoglutarate:oxygen 5-oxidoreductase activity|lysine,2-oxoglutarate 5-dioxygenase activity|lysine-2-oxoglutarate dioxygenase activity|lysine hydroxylase activity|protein lysine hydroxylase activity|peptide-lysine 5-dioxygenase activity mah 2009-07-09T11:42:07Z molecular_function owl:Class GO:0004727 biolink:NamedThing prenylated protein tyrosine phosphatase activity Catalysis of the reaction: prenylated-protein tyrosine phosphate + H2O = prenylated-protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2001075 biolink:NamedThing negative regulation of metanephric ureteric bud development Any process that stops, prevents or reduces the frequency, rate or extent of metanephric ureteric bud development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-14T01:11:12Z biological_process owl:Class GO:0034393 biolink:NamedThing positive regulation of smooth muscle cell apoptotic process Any process that activates or increases the frequency, rate, or extent of smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl stimulation of smooth muscle cell apoptosis|up-regulation of smooth muscle cell apoptosis|positive regulation of smooth muscle cell apoptosis|upregulation of smooth muscle cell apoptosis|positive regulation of SMC apoptosis|up regulation of smooth muscle cell apoptosis|activation of smooth muscle cell apoptosis biological_process owl:Class GO:2001040 biolink:NamedThing positive regulation of cellular response to drug Any process that activates or increases the frequency, rate or extent of cellular response to drug. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-27T04:12:25Z biological_process owl:Class GO:0050825 biolink:NamedThing ice binding Binding to ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. tmpzr1t_l9r_go_relaxed.owl antifreeze activity|ice crystal binding|ice nucleation activity|ice nucleation inhibitor activity molecular_function owl:Class GO:0060269 biolink:NamedThing centripetally migrating follicle cell migration The cell migration process in which a follicle cell migrates as part of an epithelial sheet between the nurse cells and the oocyte. At the end of migration, they cover the anterior of the oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150006 biolink:NamedThing urease activator complex A protein complex required for the activation of urease. Activator subunits dissociate before urease has catalytic function. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0150005 biolink:NamedThing enzyme activator complex A protein complex capable of activating an enzyme. Activating subunits may dissociate from the catalytic unit before the enzyme is active. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902007 biolink:NamedThing regulation of toxin transport Any process that modulates the frequency, rate or extent of toxin transport. tmpzr1t_l9r_go_relaxed.owl dph 2013-03-22T12:53:56Z biological_process owl:Class GO:0043454 biolink:NamedThing alkyne catabolic process The chemical reactions and pathways resulting in the breakdown of an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2. tmpzr1t_l9r_go_relaxed.owl alkyne catabolism|alkyne degradation|alkyne breakdown biological_process owl:Class GO:0051408 biolink:NamedThing glyceraldehyde 3-phosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glyceraldehyde 3-phosphate(out) + phosphate(in) = glyceraldehyde 3-phosphate(in) + phosphate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061000 biolink:NamedThing negative regulation of dendritic spine development Any process that decreases the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:29:18Z biological_process owl:Class GO:0030029 biolink:NamedThing actin filament-based process Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl microfilament-based process biological_process owl:Class GO:1905959 biolink:NamedThing positive regulation of cellular response to alcohol Any process that activates or increases the frequency, rate or extent of cellular response to alcohol. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular response to alcohol|upregulation of cellular response to alcohol|activation of cellular response to alcohol|up regulation of cellular response to alcohol hbye 2017-02-22T12:03:16Z biological_process owl:Class GO:0072351 biolink:NamedThing tricarboxylic acid biosynthetic process The chemical reactions and pathways resulting in the formation of dicarboxylic acids, any organic acid containing three carboxyl (-COOH) groups. tmpzr1t_l9r_go_relaxed.owl tricarboxylic acid biosynthesis|tricarboxylate biosynthesis|tricarboxylic acid formation|tricarboxylic acid anabolism|tricarboxylate biosynthetic process|tricarboxylic acid synthesis mah 2010-11-11T05:08:54Z biological_process owl:Class GO:0005372 biolink:NamedThing water transmembrane transporter activity Enables the transfer of water (H2O) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000256 biolink:NamedThing allantoin catabolic process The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. tmpzr1t_l9r_go_relaxed.owl allantoin catabolism|allantoin breakdown|allantoin degradation biological_process owl:Class GO:0071281 biolink:NamedThing cellular response to iron ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to iron mah 2009-12-10T03:57:22Z biological_process owl:Class GO:0010039 biolink:NamedThing response to iron ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to iron biological_process owl:Class GO:0018758 biolink:NamedThing 2,4-dihydroxy-6-(N'-ethyl)amino-1,3,5-triazine aminohydrolase activity Catalysis of the reaction: 2,4-dihydroxy-6-(N'-ethyl)amino-1,3,5-triazine + H2O = CH3CH2NH2 + cyanuric acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0122 molecular_function owl:Class GO:0046957 biolink:NamedThing negative phototaxis The directed movement of a cell or organism away from a source of light. tmpzr1t_l9r_go_relaxed.owl negative phototactic behavior|negative taxis in response to light|negative phototactic behaviour GO:0046955 biological_process owl:Class GO:0042331 biolink:NamedThing phototaxis The directed movement of a motile cell or organism in response to light. tmpzr1t_l9r_go_relaxed.owl taxis in response to light|phototactic behavior|phototactic behaviour Wikipedia:Phototaxis GO:0046953 biological_process owl:Class GO:0009824 biolink:NamedThing AMP dimethylallyltransferase activity Catalysis of the reaction: AMP + dimethylallyl diphosphate = N(6)-(dimethylallyl)adenosine 5'-phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl adenylate dimethylallyltransferase activity|cytokinin synthase activity|dimethylallyl-diphosphate:AMP dimethylallyltransferase activity|adenylate isopentenyltransferase activity|isopentenyltransferase activity|2-isopentenyl-diphosphate:AMP 2-isopentenyltransferase activity|2-isopentenyl-diphosphate:AMP delta2-isopentenyltransferase activity EC:2.5.1.27|KEGG_REACTION:R04038|RHEA:15285|MetaCyc:RXN-4307 molecular_function owl:Class GO:0050597 biolink:NamedThing taxane 10-beta-hydroxylase activity Catalysis of the reaction: H(+) + NADPH + O(2) + taxa-4(20),11-dien-5alpha-yl acetate = 10beta-hydroxytaxa-4(20),11-dien-5alpha-yl acetate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 5-alpha-taxadienol-10-beta-hydroxylase activity|taxane 10beta-hydroxylase activity|taxane 10b-hydroxylase activity|taxa-4(20),11-dien-5alpha-yl acetate,NADPH:oxygen oxidoreductase (10beta-hydroxylating) RHEA:15241|MetaCyc:1.14.13.76-RXN|KEGG_REACTION:R06309|EC:1.14.14.105 molecular_function owl:Class GO:1990626 biolink:NamedThing mitochondrial outer membrane fusion The membrane organization process that joins two mitochondrial outer membranes to form a single membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrion outer membrane fusion vw 2015-02-02T11:32:17Z biological_process owl:Class GO:0043875 biolink:NamedThing 2-ketobutyrate formate-lyase activity Catalysis of the reaction: 2-oxobutanoate + coenzyme A = propionyl-CoA + formate. tmpzr1t_l9r_go_relaxed.owl KFL|TdcE|keto-acid formate acetyltransferase MetaCyc:KETOBUTFORMLY-RXN This function is part of an anaerobic pathway for the catabolism of L-threonine. molecular_function owl:Class GO:2000959 biolink:NamedThing positive regulation of cyclodextrin catabolic process Any process that activates or increases the frequency, rate or extent of cyclodextrin catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cyclodextrin catabolism tt 2011-08-01T02:24:06Z biological_process owl:Class GO:2000956 biolink:NamedThing positive regulation of cyclodextrin metabolic process Any process that activates or increases the frequency, rate or extent of cyclodextrin metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cyclodextrin metabolism tt 2011-08-01T02:22:09Z biological_process owl:Class GO:0086037 biolink:NamedThing P-type sodium:potassium-exchanging transporter activity involved in regulation of cardiac muscle cell membrane potential Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in), that contributes to regulating the membrane potential of a cardiac muscle cell. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-11T03:33:44Z molecular_function owl:Class GO:0005391 biolink:NamedThing P-type sodium:potassium-exchanging transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in). tmpzr1t_l9r_go_relaxed.owl P-type sodium:potassium-exchanging ATPase activity|Na+,K+-ATPase activity|sodium/potassium-exchanging ATPase activity|sodium pump|Na(+)/K(+)-exchanging ATPase activity|Na+/K+-ATPase activity|Na+/K+-exchanging ATPase activity|Na(+)/K(+)-ATPase activity|sodium:potassium exchanging ATPase activity|sodium:potassium-exchanging ATPase activity|sodium/potassium-transporting ATPase activity|Na,K-activated ATPase activity https://github.com/geneontology/go-ontology/issues/17289 Wikipedia:ATPase,_Na%2B/K%2B_transporting,_alpha_1|RHEA:18353|TC:3.A.3.1.1|EC:7.2.2.13|Reactome:R-HSA-936897|MetaCyc:3.6.3.9-RXN molecular_function owl:Class GO:0042961 biolink:NamedThing ATPase-coupled antimonite transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + antimonite(in) = ADP + phosphate + antimonite(out). tmpzr1t_l9r_go_relaxed.owl antimonite-transporting ATPase activity|ATP-dependent antimonite transporter activity molecular_function owl:Class GO:0103088 biolink:NamedThing 2-(6'-methylthio)hexylmalate synthase activity Catalysis of the reaction: 2-oxo-8-methylthiooctanoate + acetyl-CoA + H2O <=> H+ + 2-(6'-methylthio)hexylmalate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4172 molecular_function owl:Class GO:0045917 biolink:NamedThing positive regulation of complement activation Any process that activates or increases the frequency, rate or extent of complement activation. tmpzr1t_l9r_go_relaxed.owl up-regulation of complement activation|activation of complement activation|up regulation of complement activation|positive regulation of complement cascade|upregulation of complement activation|stimulation of complement activation biological_process owl:Class GO:0015317 biolink:NamedThing phosphate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphate(out) + H+(out) = phosphate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl phosphate:hydrogen symporter activity|phosphate ion carrier activity https://github.com/geneontology/go-ontology/issues/14221 GO:0015320 molecular_function owl:Class GO:0030780 biolink:NamedThing 12-hydroxydihydrochelirubine 12-O-methyltransferase activity Catalysis of the reaction: 12-hydroxydihydrochelirubine + S-adenosyl-L-methionine(1+) = S-adenosyl-L-homocysteine + dihydromacarpine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:12-hydroxydihydrochelirubine 12-O-methyltransferase activity KEGG_REACTION:R04705|EC:2.1.1.120|MetaCyc:2.1.1.120-RXN|RHEA:21092 molecular_function owl:Class GO:0018398 biolink:NamedThing peptidyl-phenylalanine bromination to L-3'-bromophenylalanine The bromination of peptidyl-phenylalanine to form L-3'-bromophenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0175 biological_process owl:Class GO:0050887 biolink:NamedThing determination of sensory modality The determination of the type or quality of a sensation. Sensory modalities include touch, thermal sensation, visual sensation, auditory sensation and pain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046151 biolink:NamedThing eye pigment catabolic process The chemical reactions and pathways resulting in the breakdown of eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye. tmpzr1t_l9r_go_relaxed.owl eye pigment breakdown|eye pigment catabolism|eye pigment degradation biological_process owl:Class GO:0046413 biolink:NamedThing organomercury catabolic process The chemical reactions and pathways resulting in the breakdown of organomercury compounds, any organic compound containing a mercury atom. tmpzr1t_l9r_go_relaxed.owl organomercury breakdown|organomercury degradation|organomercury catabolism biological_process owl:Class GO:0047288 biolink:NamedThing monosialoganglioside sialyltransferase activity Catalysis of the reaction: D-galactosyl-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide + CMP-N-acetylneuraminate = N-acetylneuraminyl-D-galactosyl-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide + CMP. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate:D-galactosyl-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide N-acetylneuraminyltransferase activity MetaCyc:2.4.99.2-RXN|RHEA:18021|EC:2.4.99.2 molecular_function owl:Class GO:0008205 biolink:NamedThing ecdysone metabolic process The chemical reactions and pathways involving ecdysone, (22R)-2-beta,3-beta,14,22,25-pentahydroxycholest-7-en-6-one, an ecdysteroid found in insects. It is the inactive prohormone of the moulting hormone ecdysterone and may have intrinsic hormonal activity at other stages of insect development. tmpzr1t_l9r_go_relaxed.owl ecdysone metabolism biological_process owl:Class GO:2000036 biolink:NamedThing regulation of stem cell population maintenance Any process that modulates the frequency, rate or extent of stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of pluripotency tb 2010-08-05T11:35:25Z biological_process owl:Class GO:0052573 biolink:NamedThing UDP-D-galactose metabolic process The chemical reactions and pathways involving UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-galactopyranose metabolic process|uridine diphosphate galactose metabolism|UDP-D-galactose metabolism|uridine diphosphate galactose metabolic process|UDP-galactose metabolic process|UDP-galactose metabolism|UDP-D-galactopyranose metabolism 2010-07-23T03:29:57Z biological_process owl:Class GO:1904261 biolink:NamedThing positive regulation of basement membrane assembly involved in embryonic body morphogenesis Any process that activates or increases the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis. tmpzr1t_l9r_go_relaxed.owl upregulation of basement membrane assembly involved in embryonic body morphogenesis|activation of basement membrane assembly involved in embryonic body morphogenesis|up-regulation of basement membrane assembly involved in embryonic body morphogenesis|up regulation of basement membrane assembly involved in embryonic body morphogenesis als 2015-05-21T09:20:55Z biological_process owl:Class GO:0010592 biolink:NamedThing positive regulation of lamellipodium assembly Any process that increases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of lamellipodium biogenesis biological_process owl:Class GO:0010591 biolink:NamedThing regulation of lamellipodium assembly Any process that modulates the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. tmpzr1t_l9r_go_relaxed.owl regulation of lamellipodium biogenesis biological_process owl:Class GO:0051122 biolink:NamedThing hepoxilin biosynthetic process The chemical reactions and pathways resulting in the formation of hepoxilins, a class of bioactive icosanoids with roles in the regulation of cell physiology. tmpzr1t_l9r_go_relaxed.owl hepoxilin formation|hepoxilin biosynthesis|hepoxilin anabolism|hepoxilin synthesis biological_process owl:Class GO:0051121 biolink:NamedThing hepoxilin metabolic process The chemical reactions and pathways involving hepoxilins, a class of bioactive icosanoids with roles in the regulation of cell physiology. tmpzr1t_l9r_go_relaxed.owl hepoxilin metabolism biological_process owl:Class GO:0140252 biolink:NamedThing regulation protein catabolic process at postsynapse Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein at the postsynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/204 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:35:56Z biological_process owl:Class GO:0052863 biolink:NamedThing 1-deoxy-D-xylulose 5-phosphate metabolic process The chemical reactions and pathways involving 1-deoxy-D-xylulose 5-phosphate, the 5-phospho derivative of 1-deoxy-D-xylulose. 1-deoxy-D-xylulose 5-phosphate is an intermediate in the non-mevalonate pathway and a common precursor for isoprenoid, thiamin, and pyridoxol biosynthesis. tmpzr1t_l9r_go_relaxed.owl (2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate metabolism|1-deoxy-D-xylulose 5-phosphate metabolism|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate metabolic process biological_process owl:Class GO:1902709 biolink:NamedThing cellular response to plumbagin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a plumbagin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2014-02-20T13:50:04Z biological_process owl:Class GO:0014024 biolink:NamedThing neural rod cavitation The process of rod cavitation, which is the formation of a lumen in the neural rod during primary neurulation, producing the neural tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018276 biolink:NamedThing isopeptide cross-linking via N6-glycyl-L-lysine The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glycine to produce N6-glycyl-L-lysine. This is distinct from the formation of the thiolester intermediate, which occurs during ubiquitination. tmpzr1t_l9r_go_relaxed.owl RESID:AA0125 See also the biological process term 'peptide cross-linking via S-glycyl-L-cysteine ; GO:0018255'. biological_process owl:Class GO:0047680 biolink:NamedThing aryl-acylamidase activity Catalysis of the reaction: anilide + H(2)O = a carboxylate + aniline + H(+). tmpzr1t_l9r_go_relaxed.owl pseudocholinesterase (associated with arylacylamidase)|AAA-1|AAA-2|brain acetylcholinesterase (is associated with AAA-2)|aryl-acylamide amidohydrolase activity RHEA:20297|EC:3.5.1.13|KEGG_REACTION:R01862|MetaCyc:ARYL-ACYLAMIDASE-RXN molecular_function owl:Class GO:0000913 biolink:NamedThing preprophase band assembly The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation. tmpzr1t_l9r_go_relaxed.owl preprophase band formation biological_process owl:Class GO:1904340 biolink:NamedThing positive regulation of dopaminergic neuron differentiation Any process that activates or increases the frequency, rate or extent of dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl activation of dopaminergic neuron differentiation|up-regulation of dopaminergic neuron differentiation|up regulation of dopaminergic neuron differentiation|upregulation of dopaminergic neuron differentiation sl 2015-06-11T18:06:32Z biological_process owl:Class GO:1904338 biolink:NamedThing regulation of dopaminergic neuron differentiation Any process that modulates the frequency, rate or extent of dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-11T18:06:19Z biological_process owl:Class GO:1904137 biolink:NamedThing negative regulation of convergent extension involved in notochord morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in notochord morphogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of convergent extension involved in notochord morphogenesis|down-regulation of convergent extension involved in notochord morphogenesis|inhibition of convergent extension involved in notochord morphogenesis|down regulation of convergent extension involved in notochord morphogenesis dph 2015-04-10T21:21:36Z biological_process owl:Class GO:0032784 biolink:NamedThing regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. tmpzr1t_l9r_go_relaxed.owl regulation of RNA elongation|regulation of DNA-dependent transcription, elongation|transcription elongation regulator activity|regulation of transcriptional elongation|regulation of transcription elongation, DNA-dependent biological_process owl:Class GO:0034412 biolink:NamedThing ascospore wall beta-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall beta-glucan formation|ascospore wall beta-glucan anabolism|ascospore wall beta-glucan synthesis|ascospore wall beta-glucan biosynthesis biological_process owl:Class GO:0052729 biolink:NamedThing dimethylglycine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + N,N-dimethylglycine = S-adenosyl-L-homocysteine + betaine. tmpzr1t_l9r_go_relaxed.owl ApDMT|S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase activity EC:2.1.1.161|MetaCyc:RXN-9680|EC:2.1.1.162|EC:2.1.1.157|MetaCyc:R482-RXN|KEGG_REACTION:R07244|RHEA:10072 ai 2011-08-16T03:45:16Z molecular_function owl:Class GO:0035668 biolink:NamedThing TRAM-dependent toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the TRAM adaptor mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl TRAM-dependent toll-like receptor signalling pathway|TRAM-dependent TLR signaling pathway bf 2011-02-01T02:39:34Z biological_process owl:Class GO:0089705 biolink:NamedThing protein localization to outer membrane A process in which a protein is transported to, or maintained in, a specific location the cell outer membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043501 biolink:NamedThing skeletal muscle adaptation Any process in which skeletal muscles change their phenotypic profiles in response to altered functional demands and a variety of signals. tmpzr1t_l9r_go_relaxed.owl skeletal muscle plasticity biological_process owl:Class GO:0055045 biolink:NamedThing antipodal cell degeneration The process in which the antipodal cells undergo programmed cell death. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900665 biolink:NamedThing negative regulation of emodin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of emodin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of emodin anabolism|downregulation of emodin formation|inhibition of emodin formation|down regulation of emodin synthesis|negative regulation of emodin biosynthesis|negative regulation of emodin anabolism|downregulation of emodin biosynthetic process|down-regulation of emodin formation|inhibition of emodin synthesis|negative regulation of emodin synthesis|inhibition of emodin anabolism|down regulation of emodin anabolism|inhibition of emodin biosynthesis|down-regulation of emodin anabolism|down regulation of emodin biosynthesis|down-regulation of emodin synthesis|down-regulation of emodin biosynthesis|inhibition of emodin biosynthetic process|negative regulation of emodin formation|downregulation of emodin synthesis|down-regulation of emodin biosynthetic process|down regulation of emodin biosynthetic process|down regulation of emodin formation|downregulation of emodin biosynthesis di 2012-05-22T04:14:58Z biological_process owl:Class GO:1903280 biolink:NamedThing negative regulation of calcium:sodium antiporter activity Any process that stops, prevents or reduces the frequency, rate or extent of calcium:sodium antiporter activity. tmpzr1t_l9r_go_relaxed.owl downregulation of sodium:calcium exchange|downregulation of mitochondrial sodium/calcium ion exchange|down regulation of calcium:sodium antiporter activity|inhibition of sodium/calcium exchanger|inhibition of calcium:sodium antiporter activity|negative regulation of mitochondrial sodium/calcium ion exchange|down-regulation of sodium:calcium exchange|inhibition of sodium:calcium exchange|down-regulation of mitochondrial sodium/calcium ion exchange|downregulation of calcium:sodium antiporter activity|down regulation of sodium/calcium exchanger|negative regulation of sodium:calcium exchange|down regulation of mitochondrial sodium/calcium ion exchange|down-regulation of calcium:sodium antiporter activity|downregulation of sodium/calcium exchanger|inhibition of mitochondrial sodium/calcium ion exchange|down regulation of sodium:calcium exchange|negative regulation of sodium/calcium exchanger|down-regulation of sodium/calcium exchanger rl 2014-08-11T12:53:38Z biological_process owl:Class GO:0000467 biolink:NamedThing exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 3'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010230 biolink:NamedThing alternative respiration Alternative respiration pathway consumes oxygen, oxidizes NADH to NAD+ and generates water. During electron flow, proton motive force is diminished resulting in fewer molecules of ATP compared to cytochrome pathway. The pathway is found in plants, algae and some protozoa. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051612 biolink:NamedThing negative regulation of serotonin uptake Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of serotonin into a cell. tmpzr1t_l9r_go_relaxed.owl downregulation of serotonin uptake|negative regulation of 5-HT uptake|down-regulation of serotonin uptake|negative regulation of 5-hydroxytryptamine uptake|negative regulation of 5HT uptake|negative regulation of serotonin import|down regulation of serotonin uptake biological_process owl:Class GO:0046094 biolink:NamedThing deoxyinosine metabolic process The chemical reactions and pathways involving deoxyinosine, hypoxanthine deoxyriboside. tmpzr1t_l9r_go_relaxed.owl deoxyinosine metabolism biological_process owl:Class GO:0016136 biolink:NamedThing saponin catabolic process The chemical reactions and pathways resulting in the breakdown of saponins, glycosides of plants in which the aglycan (sapogenin) group is a terpene or steroid and the sugar group is a glucose, a galactose, a pentose, a methylpentose or an oligosaccharide. Saponins are powerful surfactant agents and membrane active; they are, hence, toxic to animals on injection. tmpzr1t_l9r_go_relaxed.owl saponin breakdown|saponin catabolism|saponin degradation biological_process owl:Class GO:0016134 biolink:NamedThing saponin metabolic process The chemical reactions and pathways involving saponins, glycosides of plants in which the aglycan (sapogenin) group is a terpene or steroid and the sugar group is a glucose, a galactose, a pentose, a methylpentose or an oligosaccharide. Saponins are powerful surfactant agents and membrane active; they are, hence, toxic to animals on injection. tmpzr1t_l9r_go_relaxed.owl saponin metabolism biological_process owl:Class GO:0051616 biolink:NamedThing regulation of histamine uptake Any process that modulates the frequency, rate or extent of the directed movement of the neurotransmitter histamine into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of histamine import biological_process owl:Class GO:0042757 biolink:NamedThing giant axon Extremely large, unmyelinated axon found in invertebrates. Has high conduction speeds and is usually involved in panic or escape responses. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018959 biolink:NamedThing aerobic phenol-containing compound metabolic process The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic phenol-containing compound metabolism UM-BBD_pathwayID:pba biological_process owl:Class GO:0000921 biolink:NamedThing septin ring assembly The aggregation, arrangement and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex. tmpzr1t_l9r_go_relaxed.owl septin assembly and septum biosynthesis|septin assembly and septum formation biological_process owl:Class GO:0031106 biolink:NamedThing septin ring organization Control of the formation, spatial distribution, and breakdown of the septin ring. tmpzr1t_l9r_go_relaxed.owl septin ring organisation biological_process owl:Class GO:0106243 biolink:NamedThing syn-isopimara-7,15-diene synthase activity Catalysis of the reaction: 9alpha-copalyl diphosphate = diphosphate + syn-isopimara-7,15-diene. tmpzr1t_l9r_go_relaxed.owl RHEA:62188 hjd 2019-12-19T19:04:32Z molecular_function owl:Class GO:0071311 biolink:NamedThing cellular response to acetate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:48:16Z biological_process owl:Class GO:0034478 biolink:NamedThing phosphatidylglycerol catabolic process The chemical reactions and pathways resulting in the breakdown of phosphatidylglycerols, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. tmpzr1t_l9r_go_relaxed.owl phosphatidylglycerol catabolism|phosphatidylglycerol degradation|phosphatidylglycerol breakdown biological_process owl:Class GO:1990612 biolink:NamedThing Sad1-Kms1 LINC complex A LINC complex implicated in the connection of DNA double strand breaks to the cytoskeleton during DNA double-strand break repair. tmpzr1t_l9r_go_relaxed.owl jl 2015-01-20T13:10:49Z cellular_component owl:Class GO:0034993 biolink:NamedThing meiotic nuclear membrane microtubule tethering complex A nuclear membrane protein complex which connects the nuclear outer and inner membranes together, and links links the nuclear lumen to cytoplasmic microtubules during meiosis. tmpzr1t_l9r_go_relaxed.owl SUN-KASH complex|LInker of Nucleoskeleton and Cytoskeleton complex|LINC complex cellular_component owl:Class GO:0052892 biolink:NamedThing aromatic (S)-hydroxynitrile lyase activity Catalysis of the reaction: an aromatic (S)-hydroxynitrile = an aromatic aldehyde + cyanide. tmpzr1t_l9r_go_relaxed.owl (S)-cyanohydrin carbonyl-lyase (cyanide forming) activity|(S)-oxynitrilase activity|(S)-selective hydroxynitrile lyase activity|hydroxynitrile lyase activity|(S)-cyanohydrin producing hydroxynitrile lyase activity|oxynitrilase activity|(S)-hydroxynitrile lyase activity EC:4.1.2.47|KEGG_REACTION:R09359|RHEA:54660|MetaCyc:RXN-11732 molecular_function owl:Class GO:0000424 biolink:NamedThing micromitophagy Degradation of a mitochondrion by lysosomal microautophagy. tmpzr1t_l9r_go_relaxed.owl Note that this term is not a child of mitophagy because the community genrally uses that latter to refer to the macroautophagy of mitochondria. biological_process owl:Class GO:0016237 biolink:NamedThing lysosomal microautophagy The transfer of cytosolic components into the lysosomal compartment by direct invagination of the lysosomal membrane without prior sequestration into an autophagosome. The engulfing membranes fuse, resulting in the lysosomal delivery of the cargo wrapped in a single membrane derived from the invaginated lysosomal membrane. In S. cerevisiae, the vacuole is the lysosomal compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903360 biolink:NamedThing protein localization to lateral cortical node A process in which a protein is transported to, or maintained in, a location within a lateral cortical node. tmpzr1t_l9r_go_relaxed.owl protein localization in lateral cortical node|protein localisation in lateral cortical node|protein localisation to lateral cortical node mah 2014-08-21T10:23:00Z biological_process owl:Class GO:0001175 biolink:NamedThing transcriptional start site selection at RNA polymerase III promoter Any process involved in the selection of the specific location within the template strand of an RNA polymerase III promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript. tmpzr1t_l9r_go_relaxed.owl krc 2011-06-20T01:47:38Z biological_process owl:Class GO:0001173 biolink:NamedThing DNA-templated transcriptional start site selection Any process involved in the selection of the specific location within the template strand of a DNA-dependent RNA polymerase promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript. tmpzr1t_l9r_go_relaxed.owl DNA-dependent transcriptional start site selection|transcriptional start site selection at bacterial-type RNA polymerase promoter krc 2011-06-20T12:44:11Z GO:0001176 biological_process owl:Class GO:0080053 biolink:NamedThing response to phenylalanine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905179 biolink:NamedThing negative regulation of cardiac muscle tissue regeneration Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle tissue regeneration. tmpzr1t_l9r_go_relaxed.owl down regulation of cardiac muscle tissue regeneration|down-regulation of cardiac muscle tissue regeneration|inhibition of cardiac muscle tissue regeneration|downregulation of cardiac muscle tissue regeneration rph 2016-05-05T11:30:57Z biological_process owl:Class GO:0060678 biolink:NamedThing dichotomous subdivision of terminal units involved in ureteric bud branching The process in which a ureteric bud bifurcates at its end. tmpzr1t_l9r_go_relaxed.owl bifid subdivision of terminal units involved in ureteric bud branching dph 2009-06-02T02:18:17Z biological_process owl:Class GO:2000076 biolink:NamedThing positive regulation of cytokinesis, site selection Any process that activates or increases the frequency, rate or extent of site selection that occurs as part of cytokinesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of site selection involved in cell cycle cytokinesis tb 2010-08-27T11:19:58Z biological_process owl:Class GO:1905743 biolink:NamedThing calcium import into the mitochondrion involved in negative regulation of presynaptic cytosolic calcium concentration Any mitochondrial calcium uptake that is involved in negative regulation of presynaptic cytosolic calcium concentration. tmpzr1t_l9r_go_relaxed.owl calcium ion transmembrane import into mitochondrion involved in negative regulation of presynaptic cytosolic calcium concentration|mitochondrial calcium uptake involved in negative regulation of presynaptic cytosolic calcium concentration dos 2016-12-06T10:53:17Z biological_process owl:Class GO:0070335 biolink:NamedThing aspartate binding Binding to aspartate, the alpha-amino-acid anion of 2-aminobutanedioic acid that has formula C4H5NO4. tmpzr1t_l9r_go_relaxed.owl aspartic acid binding molecular_function owl:Class GO:0102951 biolink:NamedThing indole-3-acetyl-phenylalanine synthetase activity Catalysis of the reaction: indole-3-acetate + L-phenylalanine + ATP = H+ + indole-3-acetyl-phenylalanine + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9084 molecular_function owl:Class GO:0060886 biolink:NamedThing clearance of cells from fusion plate by epithelial to mesenchymal transition The process of epithelial to mesenchymal transition that contributes to the shaping of the semicircular canal by effectively removing epithelial cells from the fusion plate, forming the loops of the canals. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T12:34:19Z biological_process owl:Class GO:0042369 biolink:NamedThing vitamin D catabolic process The chemical reactions and pathways resulting in the breakdown of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl vitamin D breakdown|calciferol catabolism|vitamin D catabolism|vitamin D degradation|cholecalciferol biosynthetic process|ergocalciferol biosynthetic process|ergocalciferol biosynthesis|calciferol catabolic process|cholecalciferol biosynthesis biological_process owl:Class GO:0098910 biolink:NamedThing regulation of atrial cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrial cardiac muscle cell contributing to the regulation of its contraction. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-10T08:49:13Z biological_process owl:Class GO:0052019 biolink:NamedThing modulation by symbiont of host hormone or growth regulator levels The alteration by an organism of the levels of hormones or growth regulators in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of hormone or growth regulator levels in other organism involved in symbiotic interaction GO:0052186 biological_process owl:Class GO:0022879 biolink:NamedThing protein-N(PI)-phosphohistidine-trehalose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + trehalose(out) = protein histidine + trehalose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl trehalose PTS transporter activity molecular_function owl:Class GO:0015574 biolink:NamedThing trehalose transmembrane transporter activity Enables the transfer of trehalose from one side of a membrane to the other. Trehalose is the disaccharide alpha-D-glucopyranosyl-alpha-D-glucopyranoside that acts of a reserve carbohydrate in certain fungi, algae and lichens. tmpzr1t_l9r_go_relaxed.owl trehalose permease activity RHEA:17629 GO:0015584 molecular_function owl:Class GO:0097059 biolink:NamedThing CNTFR-CLCF1 complex A protein complex that is composed of two soluble ciliary neurotrophic factor receptor alpha subunits (product of the CNTFR gene) and two molecules of cardiotrophin-like cytokine factor 1 (product of the CLCF1 gene). The complex is secreted into the extracellular space. tmpzr1t_l9r_go_relaxed.owl sCNTFR-CLC complex pr 2011-05-26T10:43:22Z cellular_component owl:Class GO:0061496 biolink:NamedThing half bridge of mitotic spindle pole body Structure adjacent to the plaques of the mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-11T09:13:52Z cellular_component owl:Class GO:0005825 biolink:NamedThing half bridge of spindle pole body Structure adjacent to the plaques of the spindle pole body. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903421 biolink:NamedThing regulation of synaptic vesicle recycling Any process that modulates the frequency, rate or extent of synaptic vesicle recycling. tmpzr1t_l9r_go_relaxed.owl regulation of kiss-and-run synaptic vesicle recycling|regulation of kiss-and-stay synaptic vesicle recycling An example of this is mouse LRRK2 (Q5S006) in PMID:21307259 inferred from mutant phenotype pad 2014-09-09T15:27:50Z biological_process owl:Class GO:0033223 biolink:NamedThing 2-aminoethylphosphonate transport The directed movement of 2-aminoethylphosphonate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 2-phosphonoethylamine transport|ciliatine transport biological_process owl:Class GO:0047700 biolink:NamedThing beta-glucoside kinase activity Catalysis of the reaction: ATP + cellobiose = ADP + 6-phospho-beta-D-glucosyl-(1,4)-D-glucose. tmpzr1t_l9r_go_relaxed.owl b-glucoside kinase activity|ATP:cellobiose 6-phosphotransferase activity|beta-D-glucoside kinase (phosphorylating) EC:2.7.1.85|MetaCyc:BETA-GLUCOSIDE-KINASE-RXN|RHEA:21944 molecular_function owl:Class GO:0070182 biolink:NamedThing DNA polymerase binding Binding to a DNA polymerase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015728 biolink:NamedThing mevalonate transport The directed movement of mevalonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050191 biolink:NamedThing phosphoglycerate kinase (GTP) activity Catalysis of the reaction: 3-phospho-D-glycerate + GTP = 3-phospho-D-glyceroyl phosphate + GDP + H(+). tmpzr1t_l9r_go_relaxed.owl GTP:3-phospho-D-glycerate 1-phosphotransferase activity RHEA:23332|EC:2.7.2.10|KEGG_REACTION:R01517|MetaCyc:PHOSPHOGLYCERATE-KINASE-GTP-RXN molecular_function owl:Class GO:1903783 biolink:NamedThing negative regulation of sodium ion import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion import across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl downregulation of sodium ion import across plasma membrane|down-regulation of sodium ion import across plasma membrane|inhibition of sodium ion import across plasma membrane|down regulation of sodium ion import across plasma membrane nc 2015-01-07T16:48:51Z biological_process owl:Class GO:1903782 biolink:NamedThing regulation of sodium ion import across plasma membrane Any process that modulates the frequency, rate or extent of sodium ion import across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl nc 2015-01-07T16:48:43Z biological_process owl:Class GO:0050902 biolink:NamedThing leukocyte adhesive activation The activation of loosely bound or rolling leukocytes by signals displayed on blood vessel endothelial cells, which is typically the second step in cellular extravasation. tmpzr1t_l9r_go_relaxed.owl leukocyte adhesive triggering biological_process owl:Class GO:0009032 biolink:NamedThing thymidine phosphorylase activity Catalysis of the reaction: thymidine + phosphate = thymine + 2-deoxy-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl thymidine-orthophosphate deoxyribosyltransferase activity|pyrimidine phosphorylase activity|thymidine:phosphate deoxy-alpha-D-ribosyltransferase activity|thymidine:phosphate deoxy-D-ribosyltransferase activity MetaCyc:THYM-PHOSPH-RXN|EC:2.4.2.4|RHEA:16037 molecular_function owl:Class GO:0000796 biolink:NamedThing condensin complex A multisubunit protein complex that plays a central role in chromosome condensation in meiosis and mitosis. tmpzr1t_l9r_go_relaxed.owl SMC complex|Smc2-Smc4 complex|13S condensin complex|condensin core heterodimer|condensin I complex|8S condensin complex|nuclear condensin complex https://github.com/geneontology/go-ontology/issues/12832 GO:0005676|GO:0008620|GO:0008621|GO:0000799|GO:0061814|GO:0000797 cellular_component owl:Class GO:0044815 biolink:NamedThing DNA packaging complex A protein complex that plays a role in the process of DNA packaging. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-19T11:33:45Z cellular_component owl:Class GO:0003400 biolink:NamedThing regulation of COPII vesicle coating Any process that modulates the rate, frequency, or extent of the addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-17T08:38:14Z biological_process owl:Class GO:0061422 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to alkaline pH Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH >7.0. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter in response to alkalinity dph 2012-01-26T12:42:21Z biological_process owl:Class GO:0042889 biolink:NamedThing 3-phenylpropionic acid transport The directed movement of 3-phenylpropionic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 3-phenylpropionate transport|HCA transport|hydrocinnamic acid transport biological_process owl:Class GO:0062234 biolink:NamedThing platelet activating factor catabolic process The chemical reactions and pathways resulting in the breakdown of platelet activating factor, 2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine. tmpzr1t_l9r_go_relaxed.owl 2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine catabolic process|PAF catabolic process dph 2020-03-23T15:35:49Z biological_process owl:Class GO:0098819 biolink:NamedThing depolarization of postsynaptic membrane A process that depolarizes a postsynaptic membrane relative to its resting potential. This has an excitatory effect on the post-synaptic cell, moving the membrane potential towards the firing threshold. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060955 biolink:NamedThing neural crest-derived cardiac glial cell fate commitment The commitment of neural crest cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:15:04Z biological_process owl:Class GO:0099523 biolink:NamedThing presynaptic cytosol The region of the cytosol consisting of all cytosol that is part of the presynapse. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990125 biolink:NamedThing DiaA complex A homotetrameric protein complex consisting of a symmetrical pair of DiaA homodimers. Facilitates DnaA binding to the origin of replication during replication initiation. tmpzr1t_l9r_go_relaxed.owl DiaA homotetramer bhm 2013-06-13T14:03:54Z cellular_component owl:Class GO:0072464 biolink:NamedThing response to meiotic spindle assembly checkpoint signaling A process that occurs in response to signals generated as a result of meiotic spindle assembly checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl meiotic spindle assembly checkpoint effector process|response to signal involved in meiotic spindle assembly checkpoint mah 2010-12-09T11:37:48Z biological_process owl:Class GO:0060613 biolink:NamedThing fat pad development The progression of a fat pad from its initial formation to its mature structure. A fat pad is an accumulation of adipose tissue. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T12:42:08Z biological_process owl:Class GO:0004349 biolink:NamedThing glutamate 5-kinase activity Catalysis of the reaction: L-glutamate + ATP = L-glutamyl 5-phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:gamma-L-glutamate phosphotransferase activity|gamma-glutamate kinase activity|glutamate kinase activity|ATP-L-glutamate 5-phosphotransferase activity|ATP:L-glutamate 5-phosphotransferase activity|gamma-glutamyl kinase activity EC:2.7.2.11|RHEA:14877|KEGG_REACTION:R00239|MetaCyc:GLUTKIN-RXN molecular_function owl:Class GO:1900518 biolink:NamedThing regulation of response to pullulan Any process that modulates the frequency, rate or extent of response to pullulan. tmpzr1t_l9r_go_relaxed.owl tt 2012-05-02T04:11:58Z biological_process owl:Class GO:0034165 biolink:NamedThing positive regulation of toll-like receptor 9 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 9 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR9 signaling pathway|positive regulation of toll-like receptor 9 signalling pathway biological_process owl:Class GO:1904795 biolink:NamedThing positive regulation of euchromatin binding Any process that activates or increases the frequency, rate or extent of euchromatin binding. tmpzr1t_l9r_go_relaxed.owl upregulation of euchromatin binding|up-regulation of euchromatin binding|activation of euchromatin binding|up regulation of euchromatin binding nc 2015-11-09T11:43:19Z biological_process owl:Class GO:0062208 biolink:NamedThing positive regulation of pattern recognition receptor signaling pathway Any process that decreases the rate, frequency or extent of a pattern recognition receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl dph 2020-02-03T14:45:27Z biological_process owl:Class GO:0045894 biolink:NamedThing negative regulation of mating-type specific transcription, DNA-templated Any mating-type specific process that stops, prevents or reduces the rate of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of mating-type specific transcription, DNA-dependent|inhibition of transcription, mating-type specific|downregulation of transcription, mating-type specific|down-regulation of transcription, mating-type specific|down regulation of transcription, mating-type specific biological_process owl:Class GO:0044256 biolink:NamedThing protein digestion The whole of the physical, chemical, and biochemical processes carried out by living organisms to break down ingested proteins into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007028 biolink:NamedThing cytoplasm organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. tmpzr1t_l9r_go_relaxed.owl cytoplasm organisation|cytoplasm organization and biogenesis biological_process owl:Class GO:0006268 biolink:NamedThing DNA unwinding involved in DNA replication The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA unwinding factor|DNA unwinding during replication Note that this term refers to a geometric change in DNA conformation, and should not be confused with 'DNA topological change ; GO:0006265'. biological_process owl:Class GO:1905277 biolink:NamedThing negative regulation of epithelial tube formation Any process that stops, prevents or reduces the frequency, rate or extent of epithelial tube formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of epithelial tube formation|inhibition of epithelial tube formation|down regulation of epithelial tube formation|downregulation of epithelial tube formation An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). bhm 2016-06-20T09:35:49Z biological_process owl:Class GO:0052836 biolink:NamedThing inositol 5-diphosphate pentakisphosphate 5-kinase activity Catalysis of the reaction: ATP + inositol 5-diphosphate pentakisphosphate = ADP + inositol 5-triphosphate pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855224|Reactome:R-HSA-1855158 ai 2011-11-29T01:14:22Z molecular_function owl:Class GO:0140124 biolink:NamedThing positive regulation of Lewy body formation Any process that activates or increases the frequency, rate or extent of Lewy body formation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14160 pg 2017-10-25T07:10:14Z biological_process owl:Class GO:0090261 biolink:NamedThing positive regulation of inclusion body assembly Any process that increases the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-03T04:23:54Z biological_process owl:Class GO:0015633 biolink:NamedThing ABC-type zinc transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(out) = ADP + phosphate + Zn2+(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent zinc transmembrane transporter activity|zinc porter activity|ATPase-coupled zinc transmembrane transporter activity|zinc-transporting ATPase activity|zinc transporting ATPase activity RHEA:29795|EC:7.2.2.20 molecular_function owl:Class GO:1900610 biolink:NamedThing F-9775A catabolic process The chemical reactions and pathways resulting in the breakdown of F-9775A. tmpzr1t_l9r_go_relaxed.owl F-9775A breakdown|F-9775A catabolism|F-9775A degradation di 2012-05-15T07:02:49Z biological_process owl:Class GO:0009431 biolink:NamedThing bacterial-type flagellum basal body, MS ring One of the rings of the bacterial-type flagellar basal body; a double-flanged ring that anchors the basal body to the cytoplasmic membrane. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum basal body, MS ring|flagellar basal body, MS ring|flagellar basal body, mounting plate GO:0009430 cellular_component owl:Class GO:0021856 biolink:NamedThing hypothalamic tangential migration using cell-axon interactions The movement of a hypothalamic neuronal precursor tangentially through the forebrain using an interaction of the migrating cells with axons of other neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045931 biolink:NamedThing positive regulation of mitotic cell cycle Any process that activates or increases the rate or extent of progression through the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of progression through mitotic cell cycle|upregulation of progression through mitotic cell cycle|positive regulation of mitotic cell cycle progression|up-regulation of progression through mitotic cell cycle|positive regulation of progression through mitotic cell cycle|up regulation of progression through mitotic cell cycle|activation of progression through mitotic cell cycle biological_process owl:Class GO:0102977 biolink:NamedThing nitrilotriacetate monooxygenase activity (FMN-dependent) Catalysis of the reaction: nitrilotriacetate + O2 + FMNH2 = ammoniodiacetate + 2-oxo monocarboxylic acid anion + H2O + FMN. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.10|MetaCyc:RXN-9508|RHEA:31359 molecular_function owl:Class GO:0090610 biolink:NamedThing bundle sheath cell fate specification The process in which a cell becomes capable of differentiating autonomously into a bundle sheath cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-26T13:17:05Z biological_process owl:Class GO:1903446 biolink:NamedThing geraniol metabolic process The chemical reactions and pathways involving geraniol. tmpzr1t_l9r_go_relaxed.owl geraniol metabolism di 2014-09-19T08:18:34Z biological_process owl:Class GO:0006651 biolink:NamedThing diacylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group. tmpzr1t_l9r_go_relaxed.owl diacylglycerol anabolism|diglyceride biosynthesis|diacylglycerol biosynthesis|diacylglycerol synthesis|diacylglycerol formation biological_process owl:Class GO:0046463 biolink:NamedThing acylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. tmpzr1t_l9r_go_relaxed.owl acylglycerol synthesis|acylglycerol biosynthesis|acylglycerol anabolism|acylglycerol formation biological_process owl:Class GO:1904188 biolink:NamedThing negative regulation of transformation of host cell by virus Any process that stops, prevents or reduces the frequency, rate or extent of transformation of host cell by virus. tmpzr1t_l9r_go_relaxed.owl downregulation of transformation of host cell by virus|down-regulation of viral transformation of host cell|downregulation of viral transformation of host cell|down-regulation of transformation of host cell by virus|inhibition of viral transformation|down regulation of viral transformation of host cell|negative regulation of viral transformation|negative regulation of viral transformation of host cell|inhibition of viral transformation of host cell|inhibition of transformation of host cell by virus|down regulation of transformation of host cell by virus|down-regulation of viral transformation|down regulation of viral transformation|downregulation of viral transformation pga 2015-05-05T15:30:04Z biological_process owl:Class GO:0014860 biolink:NamedThing neurotransmitter secretion involved in regulation of skeletal muscle contraction The regulated release of neurotransmitter into the synaptic cleft involved in skeletal muscle contraction. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. Among the many substances that have the properties of a neurotransmitter are acetylcholine, noradrenaline, adrenaline, dopamine, glycine, gamma aminobutyrate, glutamic acid, substance P, enkephalins, endorphins and serotonin. tmpzr1t_l9r_go_relaxed.owl neurotransmitter secretion involved in control of skeletal muscle contraction biological_process owl:Class GO:0010464 biolink:NamedThing regulation of mesenchymal cell proliferation Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021947 biolink:NamedThing outward migration of deep nuclear neurons The directed movement of a deep nuclear neuron from their ventrolateral origin to a rostrodorsal region of the cerebellar plate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030660 biolink:NamedThing Golgi-associated vesicle membrane The lipid bilayer surrounding a vesicle associated with the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl Golgi vesicle membrane cellular_component owl:Class GO:0006860 biolink:NamedThing extracellular amino acid transport The directed extracellular movement of amino acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046191 biolink:NamedThing aerobic phenol-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic phenol-containing compound breakdown|aerobic phenol-containing compound degradation|aerobic phenol-containing compound catabolism biological_process owl:Class GO:0071044 biolink:NamedThing histone mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA). tmpzr1t_l9r_go_relaxed.owl krc 2009-07-30T09:48:10Z biological_process owl:Class GO:1904823 biolink:NamedThing purine nucleobase transmembrane transport The process in which a purine nucleobase is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2015-11-19T09:07:56Z biological_process owl:Class GO:2001295 biolink:NamedThing malonyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of malonyl-CoA, the S-malonyl derivative of coenzyme A. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA biosynthesis|malonyl-CoA synthesis|malonyl-CoA anabolism|malonyl-CoA formation pr 2012-02-14T02:23:21Z biological_process owl:Class GO:0043401 biolink:NamedThing steroid hormone mediated signaling pathway A series of molecular signals mediated by a steroid hormone binding to a receptor. tmpzr1t_l9r_go_relaxed.owl steroid hormone mediated signalling biological_process owl:Class GO:0035009 biolink:NamedThing negative regulation of melanization defense response Any process that reduces the rate or extent of the melanization defense response. This regulation is critical to limit melanization to the site of injury or infection. tmpzr1t_l9r_go_relaxed.owl down regulation of melanization defense response|inhibition of melanization defense response|negative regulation of melanization defence response|downregulation of melanization defense response|down-regulation of melanization defense response biological_process owl:Class GO:0021869 biolink:NamedThing forebrain ventricular zone progenitor cell division The mitotic division of a basal progenitor giving rise to two neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000408 biolink:NamedThing negative regulation of T cell extravasation Any process that stops, prevents or reduces the frequency, rate or extent of T cell extravasation. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-lymphocyte extravasation|negative regulation of T-cell extravasation|negative regulation of T lymphocyte extravasation mah 2011-02-23T10:52:28Z biological_process owl:Class GO:0042184 biolink:NamedThing xylene catabolic process The chemical reactions and pathways resulting in the breakdown of xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene. tmpzr1t_l9r_go_relaxed.owl xylene breakdown|xylene catabolism|xylene degradation biological_process owl:Class GO:0019564 biolink:NamedThing aerobic glycerol catabolic process The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic glycerol breakdown|aerobic glycerol catabolism|aerobic glycerol fermentation|aerobic glycerol degradation MetaCyc:PWY0-381 GO:0019565 biological_process owl:Class GO:0071853 biolink:NamedThing fungal-type cell wall disassembly A cellular process that results in the breakdown of a fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:10:47Z biological_process owl:Class GO:1900654 biolink:NamedThing positive regulation of demethylkotanin biosynthetic process Any process that activates or increases the frequency, rate or extent of demethylkotanin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of demethylkotanin anabolism|up regulation of demethylkotanin biosynthesis|up regulation of demethylkotanin synthesis|up regulation of demethylkotanin biosynthetic process|activation of demethylkotanin anabolism|up-regulation of demethylkotanin biosynthesis|upregulation of demethylkotanin synthesis|positive regulation of demethylkotanin biosynthesis|up-regulation of demethylkotanin synthesis|upregulation of demethylkotanin biosynthesis|up regulation of demethylkotanin formation|activation of demethylkotanin biosynthetic process|upregulation of demethylkotanin formation|activation of demethylkotanin synthesis|up-regulation of demethylkotanin biosynthetic process|activation of demethylkotanin formation|up-regulation of demethylkotanin formation|activation of demethylkotanin biosynthesis|positive regulation of demethylkotanin synthesis|positive regulation of demethylkotanin anabolism|up-regulation of demethylkotanin anabolism|upregulation of demethylkotanin anabolism|upregulation of demethylkotanin biosynthetic process|positive regulation of demethylkotanin formation di 2012-05-22T04:07:49Z biological_process owl:Class GO:2000917 biolink:NamedThing positive regulation of glucuronoxylan catabolic process Any process that activates or increases the frequency, rate or extent of glucuronoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucuronoxylan catabolism tt 2011-07-29T07:54:50Z biological_process owl:Class GO:0120218 biolink:NamedThing host interaction involved in quorum sensing A quorum sensing process that is modulated by some interaction with a host cell or organism. tmpzr1t_l9r_go_relaxed.owl krc 2019-11-01T21:52:08Z biological_process owl:Class GO:0014709 biolink:NamedThing positive regulation of somitomeric trunk muscle development Any process that activates, maintains or increases the frequency, rate or extent of somitomeric trunk muscle development. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009399 biolink:NamedThing nitrogen fixation The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Nitrogen_fixation|MetaCyc:N2FIX-PWY biological_process owl:Class GO:0050212 biolink:NamedThing progesterone 11-alpha-monooxygenase activity Catalysis of the reaction: AH(2) + O(2) + progesterone = 11alpha-hydroxyprogesterone + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl progesterone,hydrogen-donor:oxygen oxidoreductase (11alpha-hydroxylating)|progesterone 11alpha-hydroxylase activity|progesterone 11-alpha-hydroxylase activity|progesterone 11a-monooxygenase activity|progesterone 11alpha-monooxygenase activity KEGG_REACTION:R02214|EC:1.14.99.14|RHEA:18205|MetaCyc:PROGESTERONE-11-ALPHA-MONOOXYGENASE-RXN molecular_function owl:Class GO:0046304 biolink:NamedThing 2-nitropropane catabolic process The chemical reactions and pathways resulting in the breakdown of 2-nitropropane, a clear, colorless liquid with a mild, fruity odor. tmpzr1t_l9r_go_relaxed.owl 2-nitropropane breakdown|2-nitropropane catabolism|2-nitropropane degradation biological_process owl:Class GO:0044472 biolink:NamedThing envenomation resulting in modulation of calcium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of a calcium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:17:25Z biological_process owl:Class GO:2000920 biolink:NamedThing positive regulation of glucuronoarabinoxylan catabolic process Any process that activates or increases the frequency, rate or extent of glucuronoarabinoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucuronoarabinoxylan catabolism tt 2011-08-01T12:36:58Z biological_process owl:Class GO:0140647 biolink:NamedThing P450-containing electron transport chain A electron transport chain in which one or more electron carriers operate to transfer electrons from donors to a cytochrome P450 protein or domain. Electron carriers operating in this chain include FAD-containing flavoproteins or domains, FMN domains, ferredoxins and cytochrome b5. The reduced cytochrome P450 functions as the terminal oxidase and participates in a wide range of biochemical pathways. tmpzr1t_l9r_go_relaxed.owl P450-containing system https://github.com/geneontology/go-ontology/issues/21455 Wikipedia:P450-containing_systems pg 2021-05-21T08:34:01Z biological_process owl:Class GO:1903477 biolink:NamedThing mitotic contractile ring actin filament bundle assembly Any actin filament bundle assembly that is involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl actin filament bundle assembly involved in mitotic actomyosin contractile ring assembly vw 2014-09-23T14:56:01Z biological_process owl:Class GO:0043028 biolink:NamedThing cysteine-type endopeptidase regulator activity involved in apoptotic process Binds to and modulates the activity of a cysteine-type endopeptidase involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl caspase regulator activity molecular_function owl:Class GO:0045492 biolink:NamedThing xylan biosynthetic process The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. tmpzr1t_l9r_go_relaxed.owl xylan biosynthesis|xylan formation|xylan anabolism|xylan synthesis biological_process owl:Class GO:0010865 biolink:NamedThing stipule development The process whose specific outcome is the progression of the stipule over time, from its formation to the mature structure. A stipule is one of (usually) a pair of appendages at the bases of leaves in many broad-leaved angiosperms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008201 biolink:NamedThing heparin binding Binding to heparin, a member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. tmpzr1t_l9r_go_relaxed.owl heparan sulfate binding molecular_function owl:Class GO:0062054 biolink:NamedThing fluoride channel activity Enables the facilitated diffusion of fluoride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl dph 2018-06-25T13:30:23Z molecular_function owl:Class GO:0005253 biolink:NamedThing anion channel activity Enables the energy-independent passage of anions across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl non-selective anion channel activity Reactome:R-HSA-432034|Reactome:R-HSA-432036 molecular_function owl:Class GO:2001119 biolink:NamedThing methanofuran metabolic process The chemical reactions and pathways involving a methanofuran. tmpzr1t_l9r_go_relaxed.owl methanofuran metabolism jl 2011-10-11T12:34:08Z biological_process owl:Class GO:0002852 biolink:NamedThing regulation of T cell mediated cytotoxicity directed against tumor cell target Any process that modulates the frequency, rate, or extent of T cell mediated cytotoxicity directed against a tumor cell target. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018955 biolink:NamedThing phenanthrene metabolic process The chemical reactions and pathways involving phenanthrene, a tricyclic aromatic hydrocarbon used in explosives and in the synthesis of dyes and drugs. Although phenanthrene is not mutagenic or carcinogenic, it has been shown to be toxic to marine diatoms, gastropods, mussels, crustaceans, and fish. tmpzr1t_l9r_go_relaxed.owl phenanthrene metabolism UM-BBD_pathwayID:pha biological_process owl:Class GO:1905424 biolink:NamedThing regulation of Wnt-mediated midbrain dopaminergic neuron differentiation Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wingless signaling pathway involved in mDA neuron differentiation|regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wg signalling pathway involved in midbrain DA neurogenesis|regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wg signaling pathway involved in midbrain DA neurogenesis|regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|regulation of frizzled signaling pathway involved in mDA neuron differentiation|regulation of Wg signalling pathway involved in mDA neuron differentiation|regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wnt signaling pathway involved in mDA neuron differentiation|regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt-mediated midbrain DA neuron differentiation|regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|regulation of midbrain dopaminergic neuron differentiation by regulation of Wnt signaling|regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|regulation of Wingless signalling pathway involved in mDA neuron differentiation|regulation of Wg signaling pathway involved in mDA neuron differentiation|regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of frizzled signalling pathway involved in mDA neuron differentiation|regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production bf 2016-09-07T10:03:36Z biological_process owl:Class GO:2001027 biolink:NamedThing negative regulation of endothelial cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl rl 2011-08-22T01:07:31Z biological_process owl:Class GO:0102178 biolink:NamedThing 4alpha-formyl-ergosta-7,24(241)-dien-3beta-ol-methyl oxidase activity Catalysis of the reaction: 4alpha-formyl-ergosta-7,24(241)-dien-3beta-ol + O2 + NADH <=> 4alpha-carboxy-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:58880|MetaCyc:RXN-11932 molecular_function owl:Class GO:0005534 biolink:NamedThing galactose binding Binding to aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides. tmpzr1t_l9r_go_relaxed.owl galactose binding lectin molecular_function owl:Class GO:1902236 biolink:NamedThing negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of an endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of endoplasmic reticulum stress-induced apoptosis|down regulation of apoptosis in response to ER stress|inhibition of ER stress-induced apoptosis|down-regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|inhibition of endoplasmic reticulum stress-induced apoptosis|down regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|down-regulation of endoplasmic reticulum stress-induced apoptosis|negative regulation of apoptosis triggered by ER stress|negative regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|inhibition of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|negative regulation of ER stress-induced apoptosis|down regulation of endoplasmic reticulum stress-induced apoptosis|downregulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|downregulation of ER stress-induced apoptosis|inhibition of apoptosis triggered by ER stress|inhibition of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|down-regulation of apoptosis in response to ER stress|down-regulation of ER stress-induced apoptosis|downregulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|negative regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|downregulation of apoptosis in response to ER stress|negative regulation of endoplasmic reticulum stress-induced apoptosis|down-regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|negative regulation of apoptosis in response to ER stress|inhibition of apoptosis in response to ER stress|down regulation of apoptosis triggered by ER stress|down-regulation of apoptosis triggered by ER stress|down regulation of ER stress-induced apoptosis|down regulation of intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress|downregulation of apoptosis triggered by ER stress rl 2013-06-18T15:19:43Z biological_process owl:Class GO:0032974 biolink:NamedThing amino acid transmembrane export from vacuole The directed movement of amino acids out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl amino acid efflux from vacuole|vacuolar amino acid export biological_process owl:Class GO:0046117 biolink:NamedThing queuosine catabolic process The chemical reactions and pathways resulting in the breakdown of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents. tmpzr1t_l9r_go_relaxed.owl queuosine catabolism|queuosine breakdown|queuosine degradation biological_process owl:Class GO:0044000 biolink:NamedThing movement in host The process in which an organism or its progeny spreads from one location to another within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl movement of symbiont in host|symbiont movement within host|symbiont movement in host|movement of symbiont within host|movement within host biological_process owl:Class GO:0052126 biolink:NamedThing movement in host environment The directed movement of an organism or motile cell on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl movement in response to host biological_process owl:Class GO:0018961 biolink:NamedThing pentachlorophenol metabolic process The chemical reactions and pathways involving pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms. tmpzr1t_l9r_go_relaxed.owl PCP metabolic process|pentachlorophenol metabolism|PCP metabolism UM-BBD_pathwayID:pcp biological_process owl:Class GO:1903140 biolink:NamedThing regulation of establishment of endothelial barrier Any process that modulates the frequency, rate or extent of establishment of endothelial barrier. tmpzr1t_l9r_go_relaxed.owl als 2014-07-01T12:12:34Z biological_process owl:Class GO:2000183 biolink:NamedThing negative regulation of progesterone biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of progesterone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of progesterone formation|negative regulation of progesterone biosynthesis|negative regulation of progesterone anabolism|negative regulation of progesterone synthesis dph 2010-10-14T07:36:10Z biological_process owl:Class GO:0000175 biolink:NamedThing 3'-5'-exoribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl 3'-5' exoribonuclease activity Reactome:R-HSA-6791227|Reactome:R-HSA-9694632|Reactome:R-HSA-9682603|Reactome:R-HSA-430028|Reactome:R-HSA-6791222|EC:3.1.13.- molecular_function owl:Class GO:0008408 biolink:NamedThing 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. tmpzr1t_l9r_go_relaxed.owl 3'-5'-exonuclease activity Reactome:R-HSA-3245943 molecular_function owl:Class GO:0006171 biolink:NamedThing cAMP biosynthetic process The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl cyclic AMP biosynthetic process|cAMP anabolism|3',5'-cAMP biosynthesis|3',5' cAMP biosynthetic process|adenosine 3',5'-cyclophosphate biosynthetic process|cAMP biosynthesis|cAMP formation|3',5'-cAMP biosynthetic process|cyclic AMP biosynthesis|cAMP synthesis|3',5' cAMP biosynthesis|adenosine 3',5'-cyclophosphate biosynthesis biological_process owl:Class GO:0043808 biolink:NamedThing lyso-ornithine lipid acyltransferase activity Catalysis of the reaction: lyso-ornithine lipid + acyl-[acyl-carrier protein] = ornithine lipid + [acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901316 biolink:NamedThing positive regulation of histone H2A K63-linked ubiquitination Any process that activates or increases the frequency, rate or extent of histone H2A K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H2A K63-linked ubiquitination|up-regulation of histone H2A K63-linked ubiquitination|upregulation of histone H2A K63-linked ubiquitination|activation of histone H2A K63-linked ubiquitination tb 2012-08-22T20:29:32Z biological_process owl:Class GO:0032108 biolink:NamedThing negative regulation of response to nutrient levels Any process that stops, prevents, or reduces the frequency, rate or extent of a response to nutrient levels. tmpzr1t_l9r_go_relaxed.owl down regulation of response to nutrient levels|down-regulation of response to nutrient levels|inhibition of response to nutrient levels|downregulation of response to nutrient levels biological_process owl:Class GO:0089704 biolink:NamedThing L-glutamate transmembrane export from vacuole The directed movement of L-glutamate out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990114 biolink:NamedThing RNA polymerase II core complex assembly The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase II core complex. tmpzr1t_l9r_go_relaxed.owl RNA Polymerase II assembly|DNA-directed RNA polymerase II, core complex assembly rb 2013-05-31T21:46:42Z biological_process owl:Class GO:2000373 biolink:NamedThing positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity Any process that activates or increases the frequency, rate or extent of DNA topoisomerase (ATP-hydrolyzing) activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of DNA topoisomerase II|positive regulation of deoxyribonucleate topoisomerase|positive regulation of DNA topoisomerase type II activity|positive regulation of topoisomerase II|positive regulation of DNA topoisomerase (ATP-hydrolysing)|positive regulation of type II DNA topoisomerase activity|positive regulation of topoisomerase|positive regulation of DNA topoisomerase IV activity|positive regulation of deoxyribonucleic topoisomerase activity mah 2011-02-09T02:35:43Z biological_process owl:Class GO:0003239 biolink:NamedThing conus arteriosus morphogenesis The process in which the conus arteriosus is generated and organized. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:25:04Z biological_process owl:Class GO:0070785 biolink:NamedThing negative regulation of growth of unicellular organism as a thread of attached cells Any process that decreases the frequency, rate or extent of the process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-07T02:37:21Z biological_process owl:Class GO:0035588 biolink:NamedThing G protein-coupled purinergic receptor signaling pathway The series of molecular signals generated as a consequence of a receptor binding to an extracellular purine or purine derivative and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G-protein coupled purinergic receptor signalling pathway|G-protein coupled purinergic receptor signaling pathway bf 2010-10-22T11:11:53Z biological_process owl:Class GO:1902441 biolink:NamedThing protein localization to meiotic spindle pole body A process in which a protein is transported to, or maintained in, a location within a meiotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl protein location to meiotic spindle pole body|protein localisation in meiotic spindle pole body|protein localization in meiotic spindle pole body|protein localisation to meiotic spindle pole body|establishment of protein localization to meiotic spindle pole body mah 2013-10-10T14:45:04Z GO:1990945|GO:1990954 biological_process owl:Class GO:0099189 biolink:NamedThing postsynaptic spectrin-associated cytoskeleton The portion of the spectrin-associated cytoskeleton contained within the postsynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T15:29:09Z cellular_component owl:Class GO:0001579 biolink:NamedThing medium-chain fatty acid transport The directed movement of medium-chain fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A medium-chain fatty acid is a fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008932 biolink:NamedThing lytic endotransglycosylase activity Catalysis of the specific cleavage of the beta-(1->4) glycosidic linkage between N-acetylmuramyl and N-acetylglucosaminyl residues in peptidoglycan, with the concomitant formation of 1,6-anhydro-N-acetylmuramyl residues. Acts on linkages within peptidoglycan chains (i.e. not at the ends) to produce shorter strands with 1,6-anhydromuramic acid ends. tmpzr1t_l9r_go_relaxed.owl murein lytic endotransglycosylase E activity EC:2.4.99.- molecular_function owl:Class GO:0008933 biolink:NamedThing lytic transglycosylase activity Catalysis of the specific cleavage of the beta-(1->4) glycosidic linkage between N-acetylmuramyl and N-acetylglucosaminyl residues in peptidoglycan, with the concomitant formation of 1,6-anhydro-N-acetylmuramyl residues. tmpzr1t_l9r_go_relaxed.owl peptidoglycan lytic transglycosylase activity|murein transglycosylase B activity EC:3.2.1.- molecular_function owl:Class GO:0046116 biolink:NamedThing queuosine metabolic process The chemical reactions and pathways involving queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents. tmpzr1t_l9r_go_relaxed.owl queuosine metabolism biological_process owl:Class GO:0002554 biolink:NamedThing serotonin secretion by platelet The regulated release of serotonin by a platelet or group of platelets. tmpzr1t_l9r_go_relaxed.owl serotonin release by platelet biological_process owl:Class GO:2000298 biolink:NamedThing regulation of Rho-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of Rho-dependent protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of Rho-associated protein kinase activity|regulation of ROCK kinase activity mah 2010-12-23T11:44:50Z biological_process owl:Class GO:0071900 biolink:NamedThing regulation of protein serine/threonine kinase activity Any process that modulates the rate, frequency, or extent of protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-15T03:08:35Z biological_process owl:Class GO:0061823 biolink:NamedThing ring centriole A ring-like structure observed at the base of the ciliary cap of insect spermatids. This structure may anchor the axoneme to the ciliary cap membrane and/or act as a diffusion barrier, proposed to be analogous to the annulus of mammalian sperm flagellum. tmpzr1t_l9r_go_relaxed.owl dph 2017-01-14T14:18:29Z cellular_component owl:Class GO:0046474 biolink:NamedThing glycerophospholipid biosynthetic process The chemical reactions and pathways resulting in the formation of glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. tmpzr1t_l9r_go_relaxed.owl glycerophospholipid anabolism|glycerophospholipid synthesis|glycerophospholipid biosynthesis|phosphoglyceride biosynthetic process|phosphoglyceride biosynthesis|glycerophospholipid formation biological_process owl:Class GO:0042217 biolink:NamedThing 1-aminocyclopropane-1-carboxylate catabolic process The chemical reactions and pathways resulting in the breakdown of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants. tmpzr1t_l9r_go_relaxed.owl 1-aminocyclopropane-1-carboxylate catabolism|1-aminocyclopropane-1-carboxylate breakdown|1-aminocyclopropane-1-carboxylate degradation biological_process owl:Class GO:0014848 biolink:NamedThing urinary tract smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary tract. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary tract consists of organs of the body that produce and discharge urine. These include the kidneys, ureters, bladder, and urethra. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090475 biolink:NamedThing lys-lys specific dibasic protein processing Any protein processing achieved by the cleavage of a peptide bond after two consecutive lysine amino acid residues within a protein. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-01T10:42:30Z biological_process owl:Class GO:0090472 biolink:NamedThing dibasic protein processing Any protein processing achieved by the cleavage of a peptide bond after two basic amino acids within a protein. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-01T10:39:26Z biological_process owl:Class GO:0036271 biolink:NamedThing response to methylphenidate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylphenidate stimulus. tmpzr1t_l9r_go_relaxed.owl response to MPD|response to ritalin|response to MPH Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T01:30:57Z biological_process owl:Class GO:0008806 biolink:NamedThing carboxymethylenebutenolidase activity Catalysis of the reaction: 4-carboxymethylenebut-2-en-4-olide + H2O = 4 oxohex-2-enedioate. tmpzr1t_l9r_go_relaxed.owl 4-carboxymethylenebut-2-en-4-olide lactonohydrolase activity|dienelactone hydrolase activity|carboxymethylene butenolide hydrolase activity|maleylacetate enol-lactonase activity UM-BBD_enzymeID:e0066|EC:3.1.1.45|RHEA:12372|MetaCyc:CARBOXYMETHYLENEBUTENOLIDASE-RXN GO:0018735 molecular_function owl:Class GO:0099146 biolink:NamedThing intrinsic component of postsynaptic density membrane The component of the postsynaptic density membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to postsynaptic specialization membrane dos 2017-07-05T10:43:24Z cellular_component owl:Class GO:0098693 biolink:NamedThing regulation of synaptic vesicle cycle Any process that modulates the frequency, rate or extent of the synaptic vesicle cycle. tmpzr1t_l9r_go_relaxed.owl dos 2017-03-21T16:06:48Z biological_process owl:Class GO:0070176 biolink:NamedThing DRM complex A transcriptional repressor complex that contains the lin-9, lin-35, lin-37, lin-52, lin-53, lin-5is involved in 4-, dpl-1 and efl-1 proteins, and is involved in cell fate specification. tmpzr1t_l9r_go_relaxed.owl DP/Rb/MuvB cellular_component owl:Class GO:0046499 biolink:NamedThing S-adenosylmethioninamine metabolic process The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. tmpzr1t_l9r_go_relaxed.owl S-adenosylmethioninamine metabolism biological_process owl:Class GO:0098849 biolink:NamedThing cellular detoxification of cadmium ion Any process that reduces or removes the toxicity of cadmium cations in a cell. These include transport of cadmium cations away from sensitive areas and to compartments or complexes whose purpose is sequestration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050394 biolink:NamedThing viomycin kinase activity Catalysis of the reaction: ATP + viomycin = ADP + O-phosphoviomycin. tmpzr1t_l9r_go_relaxed.owl ATP:viomycin O-phosphotransferase activity|capreomycin phosphotransferase activity|viomycin phosphotransferase activity MetaCyc:VIOMYCIN-KINASE-RXN|RHEA:20509|EC:2.7.1.103 molecular_function owl:Class GO:0090470 biolink:NamedThing shoot organ boundary specification The process in which the basal boundary between the stem and both vegetative and reproductive organs are established and maintained. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T16:22:03Z biological_process owl:Class GO:0090691 biolink:NamedThing formation of plant organ boundary The regionalization process that specifies plant organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T10:16:28Z biological_process owl:Class GO:0043737 biolink:NamedThing deoxyribonuclease V activity Catalysis of the endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl endonuclease V activity|endodeoxyribonuclease V|Escherichia coli endodeoxyribonuclease V activity|DNase V activity EC:3.1.21.7|MetaCyc:3.1.21.7-RXN molecular_function owl:Class GO:1990557 biolink:NamedThing mitochondrial sulfate transmembrane transport The process in which sulfate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:49:35Z biological_process owl:Class GO:2000038 biolink:NamedThing regulation of stomatal complex development Any process that modulates the frequency, rate or extent of stomatal complex development. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:36:10Z biological_process owl:Class GO:0035177 biolink:NamedThing larval foraging behavior The movement of a larva through a feeding substrate whilst feeding on food. tmpzr1t_l9r_go_relaxed.owl larval foraging behaviour biological_process owl:Class GO:0030537 biolink:NamedThing larval behavior Behavior in a larval form of an organism, an immature organism that must undergo metamorphosis to assume adult characteristics. tmpzr1t_l9r_go_relaxed.owl larval behaviour See also the biological process term 'behavior ; GO:0007610'. GO:0017037 biological_process owl:Class GO:0000411 biolink:NamedThing positive regulation of transcription by galactose Any process involving galactose that activates or increases the rate of transcription. tmpzr1t_l9r_go_relaxed.owl upregulation of transcription by galactose|up-regulation of transcription by galactose|stimulation of transcription by galactose|up regulation of transcription by galactose|activation of transcription by galactose biological_process owl:Class GO:0106347 biolink:NamedThing U2 snRNA 2'-O-methyladenosine m6 methyltransferase activity Catalysis of the reaction: a 2'-O-methyladenosine in U2 snRNA + S-adenosyl-L-methionine = an N6-methyl-2'-O-methyladenosine in U2 snRNA + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:62672 hjd 2020-12-18T15:11:10Z molecular_function owl:Class GO:0043397 biolink:NamedThing regulation of corticotropin-releasing hormone secretion Any process that modulates the frequency, rate or extent of corticotropin-releasing hormone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of CRF secretion|regulation of corticotropin-releasing factor secretion|regulation of CRH secretion biological_process owl:Class GO:0016039 biolink:NamedThing absorption of UV light The reception of a (UV light) photon by a cell, UV light being defined as having a wavelength within the range 13.6-400 nm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016037 biolink:NamedThing light absorption The reception of a photon by a cell. tmpzr1t_l9r_go_relaxed.owl absorption of light biological_process owl:Class GO:0075513 biolink:NamedThing caveolin-mediated endocytosis of virus by host cell Any caveolin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins when material is taken up into plasma membrane caveolae - specialized lipid rafts that form 50-70 nm flask-shaped invaginations of the plasma membrane - which then pinch off to form endocytic caveolar carriers containing the virus. tmpzr1t_l9r_go_relaxed.owl viral penetration via caveolae-mediated endocytosis followed by endosome disruption|viral entry into host cell via caveolin-mediated endocytosis|viral entry into host cell via caveolae-mediated endocytosis VZ:976 jl 2011-07-27T02:40:04Z biological_process owl:Class GO:0034182 biolink:NamedThing regulation of maintenance of mitotic sister chromatid cohesion Any process that modulates the extent to which the association between sister chromatids of a replicated chromosome is maintained during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036413 biolink:NamedThing histone H3-R26 citrullination The hydrolysis of peptidyl-arginine to form peptidyl-citrulline at position 26 in histone H3. tmpzr1t_l9r_go_relaxed.owl histone H3 arginine 26 citrullination bf 2013-08-22T13:59:15Z biological_process owl:Class GO:0036414 biolink:NamedThing histone citrullination The hydrolysis of peptidyl-arginine to form peptidyl-citrulline on a histone protein. tmpzr1t_l9r_go_relaxed.owl histone deimination bf 2013-08-22T14:04:26Z biological_process owl:Class GO:1900000 biolink:NamedThing regulation of anthocyanin catabolic process Any process that modulates the frequency, rate or extent of anthocyanin catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of anthocyanin catabolism|regulation of anthocyanin degradation|regulation of anthocyanin breakdown tb 2011-12-20T07:12:07Z biological_process owl:Class GO:0034176 biolink:NamedThing negative regulation of toll-like receptor 12 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 12 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 12 signalling pathway|negative regulation of TLR12 signaling pathway biological_process owl:Class GO:1990067 biolink:NamedThing intrachromosomal DNA recombination The process of DNA recombination occurring within a single chromosome. tmpzr1t_l9r_go_relaxed.owl intrastrand DNA recombination tb 2013-03-27T21:11:35Z biological_process owl:Class GO:0034740 biolink:NamedThing TFIIIC-TOP1-SUB1 complex A protein complex that contains TFIIIC, topoisomerase 1, and Sub1/PC4. Characterized in human, the complex is involved in regulating transcription from RNA polymerase III (Pol III) promoters. Topoisomerase 1 and Sub1 enhance the accuracy of transcription termination, and promote reinitiation by Pol III. tmpzr1t_l9r_go_relaxed.owl TFIIIC-Topoisomerase 1-PC4 complex cellular_component owl:Class GO:1901132 biolink:NamedThing kanamycin catabolic process The chemical reactions and pathways resulting in the breakdown of kanamycin. tmpzr1t_l9r_go_relaxed.owl kanamycin degradation|kanamycin catabolism|kanamycin breakdown yaf 2012-07-11T03:27:24Z biological_process owl:Class GO:0090235 biolink:NamedThing regulation of metaphase plate congression Any process that modulates the rate, frequency, or extent of metaphase plate congression, the alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the spindle. tmpzr1t_l9r_go_relaxed.owl regulation of chromosome congression tb 2010-01-20T11:05:55Z biological_process owl:Class GO:1900880 biolink:NamedThing 18-methylnonadec-1-ene metabolic process The chemical reactions and pathways involving 18-methylnonadec-1-ene. tmpzr1t_l9r_go_relaxed.owl 18-methylnonadec-1-ene metabolism tt 2012-06-13T02:26:28Z biological_process owl:Class GO:0075294 biolink:NamedThing positive regulation by symbiont of entry into host Any process that activates or increases the frequency, rate or extent to which it enters into the host organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by organism of entry into other organism during symbiotic interaction|positive regulation by organism of entry into other organism involved in symbiotic interaction|activation by organism of entry into other organism during symbiotic interaction|up-regulation by organism of entry into other organism during symbiotic interaction|up-regulation by symbiont of entry into host|upregulation by symbiont of entry into host|up regulation by organism of entry into other organism during symbiotic interaction|activation by symbiont of entry into host|up regulation by symbiont of entry into host|positive regulation by organism of entry into other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/19027 GO:0075295 biological_process owl:Class GO:0005105 biolink:NamedThing type 1 fibroblast growth factor receptor binding Binding to a type 1 fibroblast growth factor receptor (FGFR1). tmpzr1t_l9r_go_relaxed.owl FGFR1 binding|breathless ligand|type 1 fibroblast growth factor receptor ligand|FGFR1 ligand|breathless binding Note that breathless is the Drosophila gene encoding the type 1 fibroblast growth factor receptor (FGFR1). molecular_function owl:Class GO:0005104 biolink:NamedThing fibroblast growth factor receptor binding Binding to a fibroblast growth factor receptor (FGFR). tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor|FGFR binding|FGF receptor binding|FGFR ligand|fibroblast growth factor receptor ligand Note that branchless is the Drosophila gene encoding fibroblast growth factor. GO:0005162|GO:0001521 molecular_function owl:Class GO:0015093 biolink:NamedThing ferrous iron transmembrane transporter activity Enables the transfer of ferrous iron (Fe(II) or Fe2+) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl ferrous iron uptake transmembrane transporter activity Reactome:R-HSA-1362417|RHEA:28486|Reactome:R-HSA-442368|Reactome:R-HSA-5655760 GO:0015639 molecular_function owl:Class GO:1990839 biolink:NamedThing response to endothelin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an endothelin stimulus. Endothelin is any of three secretory vasoconstrictive peptides (endothelin-1, -2, -3). tmpzr1t_l9r_go_relaxed.owl sl 2015-08-27T19:37:52Z biological_process owl:Class GO:0033247 biolink:NamedThing regulation of penicillin catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl regulation of penicillin breakdown|regulation of penicillin degradation|regulation of penicillin catabolism biological_process owl:Class GO:0070982 biolink:NamedThing L-asparagine metabolic process The chemical reactions and pathways involving L-asparagine, (2S)-2-amino-3-carbamoylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-asparagine metabolism mah 2009-10-27T01:03:46Z biological_process owl:Class GO:0051655 biolink:NamedThing maintenance of vesicle location Any process in which a vesicle is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of vesicle localization biological_process owl:Class GO:0047155 biolink:NamedThing 3-hydroxymethylcephem carbamoyltransferase activity Catalysis of the reaction: a 3-hydroxymethylceph-3-em-4-carboxylate + carbamoyl-phosphate = phosphate + a 3-carbamoyloxymethylcephem. tmpzr1t_l9r_go_relaxed.owl carbamoyl-phosphate:3-hydroxymethylceph-3-em-4-carboxylate carbamoyltransferase activity|3'-hydroxymethylcephem-O-carbamoyltransferase activity MetaCyc:2.1.3.7-RXN|EC:2.1.3.7 GO:0045447 molecular_function owl:Class GO:1905814 biolink:NamedThing positive regulation of motor neuron axon guidance Any process that activates or increases the frequency, rate or extent of motor neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl up-regulation of motor axon pathfinding|up regulation of motor axon guidance|up-regulation of motoneuron axon guidance|upregulation of motor axon pathfinding|activation of motor axon guidance|activation of motor neuron axon guidance|positive regulation of motor axon pathfinding|up-regulation of motor axon guidance|positive regulation of motor axon guidance|upregulation of motor neuron axon guidance|up regulation of motor neuron axon guidance|upregulation of motoneuron axon guidance|up-regulation of motor neuron axon guidance|activation of motoneuron axon guidance|activation of motor axon pathfinding|up regulation of motoneuron axon guidance|up regulation of motor axon pathfinding|positive regulation of motoneuron axon guidance|upregulation of motor axon guidance hbye 2017-01-12T13:25:31Z biological_process owl:Class GO:1905812 biolink:NamedThing regulation of motor neuron axon guidance Any process that modulates the frequency, rate or extent of motor neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl regulation of motoneuron axon guidance|regulation of motor axon pathfinding|regulation of motor axon guidance hbye 2017-01-12T13:25:12Z biological_process owl:Class GO:1903352 biolink:NamedThing L-ornithine transmembrane transport The directed movement of L-ornithine across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-20T13:01:38Z biological_process owl:Class GO:0021691 biolink:NamedThing cerebellar Purkinje cell layer maturation A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar Purkinje cell layer to attain its fully functional state. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060727 biolink:NamedThing positive regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway Any process that increases the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of Neu/ErbB-2 receptor activity|positive regulation of coreceptor activity involved in epidermal growth factor receptor signalling pathway dph 2009-06-12T01:30:50Z biological_process owl:Class GO:0005954 biolink:NamedThing calcium- and calmodulin-dependent protein kinase complex An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins. tmpzr1t_l9r_go_relaxed.owl CaMKII|calcium/calmodulin-dependent protein kinase complex|CAMK2 cellular_component owl:Class GO:0010723 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to iron Any process that increases the rate of transcription from an RNA polymerase II promoter in response to an iron stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904553 biolink:NamedThing negative regulation of chemotaxis to arachidonic acid Any process that stops, prevents or reduces the frequency, rate or extent of chemotaxis to arachidonic acid. tmpzr1t_l9r_go_relaxed.owl downregulation of chemotaxis to arachidonic acid|down-regulation of chemotaxis to arachidonic acid|inhibition of chemotaxis to arachidonic acid|down regulation of chemotaxis to arachidonic acid sl 2015-08-13T21:08:20Z biological_process owl:Class GO:0050906 biolink:NamedThing detection of stimulus involved in sensory perception The series of events involved in sensory perception in which a sensory stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory transduction|sensory detection of stimulus|sensory perception, sensory transduction of stimulus|sensory perception, stimulus detection Wikipedia:Transduction_(physiology) biological_process owl:Class GO:1903597 biolink:NamedThing negative regulation of gap junction assembly Any process that stops, prevents or reduces the frequency, rate or extent of gap junction assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of gap junction assembly|down-regulation of gap junction assembly|inhibition of gap junction assembly|down regulation of gap junction assembly rl 2014-11-07T18:51:45Z biological_process owl:Class GO:0097441 biolink:NamedThing basal dendrite A dendrite that emerges near the basal pole of a neuron. In bipolar neurons, basal dendrites are either on the same side of the soma as the axon, or project toward the axon. tmpzr1t_l9r_go_relaxed.owl basilar dendrite NIF_Subcellular:sao1079900774 pr 2012-12-06T13:46:28Z cellular_component owl:Class GO:1904679 biolink:NamedThing myo-inositol import across plasma membrane The directed movement of myo-inositol from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl myo-inositol import into cell al 2012-07-03T06:22:05Z GO:0097357 biological_process owl:Class GO:0045808 biolink:NamedThing negative regulation of establishment of competence for transformation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of competence for transformation. tmpzr1t_l9r_go_relaxed.owl inhibitor of the establishment of competence for transformation activity|down-regulation of establishment of competence for transformation|inhibition of establishment of competence for transformation|down regulation of establishment of competence for transformation|downregulation of establishment of competence for transformation biological_process owl:Class GO:0002874 biolink:NamedThing regulation of chronic inflammatory response to antigenic stimulus Any process that modulates the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043958 biolink:NamedThing acryloyl-CoA reductase activity Catalysis of the reaction: acryloyl-CoA + NADH + H+ + a reduced electron-transfer flavoprotein = propionyl-CoA + NAD+ + an oxidized electron-transfer flavoprotein. tmpzr1t_l9r_go_relaxed.owl acryloyl-coenzyme A reductase activity|acrylyl-CoA reductase (NADH)|propionyl-CoA dehydrogenase EC:1.3.99.3|RHEA:34471|MetaCyc:RXN-8568 Note that this function is part of the process of L-alanine fermentation to propionate. molecular_function owl:Class GO:0034893 biolink:NamedThing N-nitrodimethylamine hydroxylase activity Catalysis of the reaction: N-nitrodimethylamine + O2 + 2 H+ + 2 e- = N-nitromethylamine + formaldehyde + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1395 molecular_function owl:Class GO:1902643 biolink:NamedThing positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process Any process that activates or increases the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown di 2014-01-21T17:54:32Z biological_process owl:Class GO:1903407 biolink:NamedThing negative regulation of P-type sodium:potassium-exchanging transporter activity Any process that stops, prevents or reduces the frequency, rate or extent of sodium:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of Na(+)/K(+)-ATPase activity|negative regulation of Na+,K+ pump|down regulation of Na,K-pump|down regulation of sodium:potassium exchanging ATPase activity|negative regulation of (Na+ + K+)-ATPase activity|down regulation of Na+/K+-exchanging ATPase activity|down regulation of Na+/K+-ATPase activity|inhibition of Na,K-pump|down-regulation of (Na+ + K+)-ATPase activity|downregulation of Na,K-pump|down regulation of sodium:potassium-exchanging ATPase activity|downregulation of ATP phosphohydrolase (Na+/K+-exchanging)|down-regulation of Na+,K+-ATPase activity|inhibition of sodium:potassium-exchanging ATPase activity|downregulation of sodium/potassium-transporting ATPase activity|down-regulation of Na+/K+-exchanging ATPase activity|down regulation of Na+,K+ pump|downregulation of Na+/K+-ATPase activity|downregulation of sodium/potassium-exchanging ATPase activity|inhibition of Na+,K+ pump|down-regulation of sodium:potassium-exchanging ATPase activity|downregulation of (Na+ + K+)-activated ATPase activity|downregulation of (Na+ + K+)-ATPase activity|down regulation of Na(+)/K(+)-exchanging ATPase activity|inhibition of Na(+)/K(+)-exchanging ATPase activity|down regulation of sodium/potassium-transporting ATPase activity|down-regulation of sodium:potassium exchanging ATPase activity|downregulation of sodium:potassium-exchanging ATPase activity|inhibition of Na,K-activated ATPase activity|negative regulation of Na,K-activated ATPase activity|down regulation of Na,K-activated ATPase activity|inhibition of Na+/K+-ATPase activity|down-regulation of sodium/potassium-transporting ATPase activity|down-regulation of Na+,K+ pump|down regulation of sodium/potassium-exchanging ATPase activity|negative regulation of (Na+ + K+)-activated ATPase activity|negative regulation of sodium:potassium-exchanging ATPase activity|down-regulation of Na,K-activated ATPase activity|downregulation of Na+,K+ pump|negative regulation of sodium/potassium-transporting ATPase activity|down regulation of ATP phosphohydrolase (Na+/K+-exchanging)|downregulation of Na,K-activated ATPase activity|negative regulation of Na(+)/K(+)-ATPase activity|inhibition of (Na+ + K+)-activated ATPase activity|down-regulation of Na+/K+-ATPase activity|inhibition of Na+/K+-exchanging ATPase activity|inhibition of Na+,K+-ATPase activity|negative regulation of Na+,K+-ATPase activity|negative regulation of sodium/potassium-exchanging ATPase activity|negative regulation of Na(+)/K(+)-exchanging ATPase activity|inhibition of ATP phosphohydrolase (Na+/K+-exchanging)|inhibition of sodium/potassium-exchanging ATPase activity|down-regulation of ATP phosphohydrolase (Na+/K+-exchanging)|down regulation of Na+,K+-ATPase activity|inhibition of (Na+ + K+)-ATPase activity|negative regulation of Na,K-pump|downregulation of Na(+)/K(+)-exchanging ATPase activity|inhibition of Na(+)/K(+)-ATPase activity|downregulation of sodium:potassium exchanging ATPase activity|down-regulation of sodium/potassium-exchanging ATPase activity|down regulation of (Na+ + K+)-activated ATPase activity|down regulation of Na(+)/K(+)-ATPase activity|down-regulation of Na,K-pump|downregulation of Na+/K+-exchanging ATPase activity|down-regulation of Na(+)/K(+)-exchanging ATPase activity|down-regulation of (Na+ + K+)-activated ATPase activity|downregulation of Na+,K+-ATPase activity|down regulation of (Na+ + K+)-ATPase activity|negative regulation of Na+/K+-exchanging ATPase activity|negative regulation of Na+/K+-ATPase activity|down-regulation of Na(+)/K(+)-ATPase activity|inhibition of sodium/potassium-transporting ATPase activity|inhibition of sodium:potassium exchanging ATPase activity|negative regulation of sodium:potassium exchanging ATPase activity|negative regulation of ATP phosphohydrolase (Na+/K+-exchanging) mr 2014-09-02T19:45:16Z biological_process owl:Class GO:1903406 biolink:NamedThing regulation of P-type sodium:potassium-exchanging transporter activity Any process that modulates the frequency, rate or extent of sodium:potassium-exchanging ATPase activity. tmpzr1t_l9r_go_relaxed.owl regulation of Na(+)/K(+)-exchanging ATPase activity|regulation of sodium/potassium-exchanging ATPase activity|regulation of sodium/potassium-transporting ATPase activity|regulation of ATP phosphohydrolase (Na+/K+-exchanging)|regulation of sodium:potassium exchanging ATPase activity|regulation of Na+/K+-ATPase activity|regulation of sodium pump|regulation of (Na+ + K+)-activated ATPase activity|regulation of Na,K-activated ATPase activity|regulation of Na,K-pump|regulation of sodium:potassium-exchanging ATPase activity|regulation of Na+,K+-ATPase activity|regulation of (Na+ + K+)-ATPase activity|regulation of Na+,K+ pump|regulation of Na(+)/K(+)-ATPase activity|regulation of Na+/K+-exchanging ATPase activity mr 2014-09-02T19:45:08Z biological_process owl:Class GO:0061722 biolink:NamedThing sulphoglycolysis The chemical reactions and pathways resulting in the breakdown of 6-sulfoquinovose(1-) resulting in the formation of glycerone phosphate (DHAP) and pyruvate. tmpzr1t_l9r_go_relaxed.owl sulfoglycolysis dph 2015-07-01T09:44:30Z biological_process owl:Class GO:0102893 biolink:NamedThing betanidin 6-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + betanidin <=> H+ + gomphrenin I + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8480 molecular_function owl:Class GO:2000717 biolink:NamedThing positive regulation of maintenance of mitotic sister chromatid cohesion, arms Any process that activates or increases the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl positive regulation of maintenance of mitotic sister chromatin cohesion along arms|positive regulation of maintenance of sister chromatin cohesion along arms at mitosis mah 2011-06-03T10:38:35Z biological_process owl:Class GO:0019558 biolink:NamedThing histidine catabolic process to 2-oxoglutarate The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histidine catabolism to alpha-oxoglutarate|histidine degradation to 2-oxoglutarate|histidine catabolism to 2-ketoglutarate|histidine catabolic process to 2-ketoglutarate|histidine catabolism to alpha-ketoglutarate|histidine catabolic process to alpha-oxoglutarate|histidine breakdown to 2-oxoglutarate|histidine catabolic process to alpha-ketoglutarate biological_process owl:Class GO:0048782 biolink:NamedThing negative regulation of cyanophore differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of cyanophore differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of cyanophore differentiation|inhibition of cyanophore differentiation|down regulation of cyanophore differentiation|down-regulation of cyanophore differentiation biological_process owl:Class GO:0051066 biolink:NamedThing dihydrobiopterin metabolic process The chemical reactions and pathways involving a dihydrobiopterin, a reduced pteridine derivative related to folic acid; it acts as an electron carrier in tyrosine biosynthesis and its quinoid form is produced by oxidation of tetrahydrobiopterin in several biological hydroxylation reactions. tmpzr1t_l9r_go_relaxed.owl dihydropterin metabolic process|dihydropterin metabolism|6,7-dihydrobiopterin metabolic process|dihydrobiopterin reduction|7,8-dihydrobiopterin metabolic process biological_process owl:Class GO:1905589 biolink:NamedThing positive regulation of L-arginine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-arginine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl upregulation of L-arginine import|up-regulation of L-arginine import|upregulation of L-arginine import into cell|activation of L-arginine import across plasma membrane|up-regulation of L-arginine uptake|activation of L-arginine uptake|positive regulation of L-arginine uptake|positive regulation of L-arginine import into cell|activation of L-arginine import into cell|upregulation of L-arginine uptake|up regulation of L-arginine uptake|up regulation of L-arginine import|positive regulation of L-arginine import|up-regulation of L-arginine import into cell|activation of L-arginine import al 2012-06-25T12:27:24Z GO:1901042|GO:1902828 biological_process owl:Class GO:0071013 biolink:NamedThing catalytic step 2 spliceosome A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal complex C1|mammalian spliceosomal complex C|yeast spliceosomal complex A2-2 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0031829 biolink:NamedThing type 4 serotonin receptor binding Binding to a type 4 serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 4 receptor binding|type 4 serotonin receptor ligand molecular_function owl:Class GO:0075514 biolink:NamedThing endosome lysis involved in viral entry into host cell Viral-induced lysis of the endosome involved in uptake of a virus into a host cell. Occurs after internalization of the virus through the endosomal pathway, and results in release of the viral contents from the endosome into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via caveolae-mediated endocytosis followed by endosome lysis jl 2011-07-27T02:56:15Z biological_process owl:Class GO:0035476 biolink:NamedThing angioblast cell migration The orderly movement of angioblasts, cells involved in blood vessel morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:06:32Z biological_process owl:Class GO:0036187 biolink:NamedThing cell growth mode switching, budding to filamentous The process in which a cell switches from growing as a round budding cell to growing as a filament (elongated cells attached end-to-end). An example of this is the yeast-hyphal transition of Candida albicans. tmpzr1t_l9r_go_relaxed.owl yeast to hyphal transition bf 2012-04-18T11:32:57Z biological_process owl:Class GO:0006450 biolink:NamedThing regulation of translational fidelity Any process that modulates the ability of the translational apparatus to interpret the genetic code. tmpzr1t_l9r_go_relaxed.owl regulation of translational accuracy GO:0000029 biological_process owl:Class GO:0005249 biolink:NamedThing voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-dependent potassium channel activity|voltage-gated potassium ion channel activity|voltage-sensitive potassium channel|voltage gated potassium channel activity Reactome:R-HSA-1296127 molecular_function owl:Class GO:2000783 biolink:NamedThing negative regulation of establishment of cell polarity regulating cell shape Any process that stops, prevents or reduces the frequency, rate or extent of establishment of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-23T12:17:44Z biological_process owl:Class GO:0015398 biolink:NamedThing high-affinity secondary active ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity secondary active ammonium transmembrane transporter activity molecular_function owl:Class GO:0032405 biolink:NamedThing MutLalpha complex binding Binding to a MutLalpha mismatch repair complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0150008 biolink:NamedThing bulk synaptic vesicle endocytosis Endocytosis of large regions of presynaptic membrane after intense stimulation-mediated fusion of multiple synaptic vesicles. Bulk endocytosis is triggered by high loads of membrane addition through exocytosis of synaptic vesicles and elevated concentration of calcium in the presynapse. tmpzr1t_l9r_go_relaxed.owl bulk endocytosis|activity-dependent bulk endocytosis|activity-dependent bulk synaptic vesicle endocytosis|ADBE bc 2017-12-01T10:20:18Z biological_process owl:Class GO:0051517 biolink:NamedThing negative regulation of bipolar cell growth Any process that stops, prevents, or reduces the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of bipolar cell growth|down regulation of bipolar cell growth|downregulation of bipolar cell growth|down-regulation of bipolar cell growth biological_process owl:Class GO:0097145 biolink:NamedThing BAK complex An oligomeric protein complex consisting of BAK, a member of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:48:11Z cellular_component owl:Class GO:0050669 biolink:NamedThing negative regulation of homocysteine metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving homocysteine. tmpzr1t_l9r_go_relaxed.owl negative regulation of Hcy metabolism|down regulation of homocysteine metabolic process|down-regulation of homocysteine metabolic process|negative regulation of homocysteine metabolism|downregulation of homocysteine metabolic process|inhibition of homocysteine metabolic process|negative regulation of Hcy metabolic process biological_process owl:Class GO:0042540 biolink:NamedThing hemoglobin catabolic process The chemical reactions and pathways resulting in the breakdown of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin; especially, the proteolytic cleavage of hemoglobin to yield free heme, peptides, and amino acids. tmpzr1t_l9r_go_relaxed.owl hemoglobin hydrolysis|hemoglobin breakdown|hemoglobin degradation|haemoglobin hydrolysis|haemoglobin catabolic process|hemoglobin catabolism|haemoglobin catabolism Note that 'hydrolysis' is actually a reaction rather than a process. The synonym 'hemoglobin hydrolysis' was the text string associated with the secondary ID GO:0020029, which was retained because its definition did describe a process. GO:0020029 biological_process owl:Class GO:0052079 biolink:NamedThing induction by symbiont of defense-related host MAP kinase-mediated signal transduction pathway Any process in which an organism activates, maintains or increases the frequency, rate or extent of a host MAP kinase-mediated signal transduction pathway during the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related host MAPK-mediated signal transduction pathway|upregulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|up-regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|up regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|upregulation by organism of defense-related host MAP kinase-mediated signal transduction pathway|induction by organism of defense-related host MAP kinase-mediated signal transduction pathway|positive regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|positive regulation by organism of defense-related host mitogen-activated protein kinase-mediated signal transduction pathway|activation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|activation by organism of defense-related host MAP kinase-mediated signal transduction pathway|positive regulation by organism of defense-related MAP kinase-mediated signal transduction pathway in other organism involved in symbiotic interaction|stimulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway https://github.com/geneontology/go-ontology/issues/19235 GO:0052276 biological_process owl:Class GO:0015097 biolink:NamedThing mercury ion transmembrane transporter activity Enables the transfer of mercury (Hg) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:32815 molecular_function owl:Class GO:1904142 biolink:NamedThing negative regulation of carotenoid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of carotenoid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of carotenoid biosynthetic process|down-regulation of carotenoid biosynthesis|down regulation of carotenoid biosynthesis|inhibition of carotenoid synthesis|down regulation of carotenoid synthesis|downregulation of carotenoid anabolism|inhibition of carotenoid anabolism|negative regulation of carotenoid formation|down-regulation of carotenoid synthesis|down regulation of carotenoid anabolism|inhibition of carotenoid formation|negative regulation of carotenoid biosynthesis|negative regulation of carotenoid anabolism|downregulation of carotenoid formation|downregulation of carotenoid synthesis|downregulation of carotenoid biosynthesis|inhibition of carotenoid biosynthesis|downregulation of carotenoid biosynthetic process|inhibition of carotenoid biosynthetic process|down regulation of carotenoid formation|down-regulation of carotenoid formation|down-regulation of carotenoid anabolism|negative regulation of carotenoid synthesis|down-regulation of carotenoid biosynthetic process tb 2015-04-13T19:39:13Z biological_process owl:Class GO:0042826 biolink:NamedThing histone deacetylase binding Binding to histone deacetylase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018909 biolink:NamedThing dodecyl sulfate metabolic process The chemical reactions and pathways involving dodecyl sulfate, commonly found as sodium dodecyl sulfate (SDS), a component of a variety of synthetic surfactants. tmpzr1t_l9r_go_relaxed.owl dodecyl sulphate metabolic process|dodecyl sulfate metabolism|dodecyl sulphate metabolism UM-BBD_pathwayID:dds biological_process owl:Class GO:0050460 biolink:NamedThing hydroxylamine reductase (NADH) activity Catalysis of the reaction: NH3 + NAD+ + H2O = hydroxylamine + NADH + H+. tmpzr1t_l9r_go_relaxed.owl ammonium:NAD+ oxidoreductase activity|N-hydroxy amine reductase activity|NADH:hydroxylamine oxidoreductase activity|ammonium dehydrogenase activity|NADH-hydroxylamine reductase activity|hydroxylamine reductase (NADH2)|NADH2:hydroxylamine oxidoreductase activity MetaCyc:HYDROXYLAMINE-REDUCTASE-NADH-RXN|RHEA:20581|EC:1.7.1.10 molecular_function owl:Class GO:0097278 biolink:NamedThing complement-dependent cytotoxicity Cell killing caused by the membrane attack complex formed following complement activation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18715 pr 2012-03-22T05:04:04Z biological_process owl:Class GO:0098952 biolink:NamedThing intrinsic component of spine apparatus membrane The component of the spine apparatus membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to spine apparatus membrane cellular_component owl:Class GO:0047304 biolink:NamedThing 2-aminoethylphosphonate-pyruvate transaminase activity Catalysis of the reaction: (2-aminoethyl)phosphonate + pyruvate = L-alanine + phosphonoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl 2-aminoethylphosphonate aminotransferase activity|2-aminoethylphosphonate-pyruvate aminotransferase activity|(2-aminoethyl)phosphonate aminotransferase activity|(2-aminoethyl)phosphonic acid aminotransferase activity|(2-aminoethyl)phosphonate transaminase activity|(2-aminoethyl)phosphonate:pyruvate aminotransferase activity|2-aminoethylphosphonate--pyruvate aminotransferase activity|(2-aminoethyl)phosphonate--pyruvate aminotransferase activity EC:2.6.1.37|KEGG_REACTION:R04152|RHEA:17021|MetaCyc:2.6.1.37-RXN molecular_function owl:Class GO:1904180 biolink:NamedThing negative regulation of membrane depolarization Any process that stops, prevents or reduces the frequency, rate or extent of membrane depolarization. tmpzr1t_l9r_go_relaxed.owl down-regulation of membrane depolarization|downregulation of membrane depolarization|down regulation of membrane depolarization|inhibition of membrane depolarization sl 2015-04-29T22:29:25Z biological_process owl:Class GO:0102831 biolink:NamedThing stachyose synthase activity Catalysis of the reaction: 2 raffinose <=> stachyose + sucrose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8287 molecular_function owl:Class GO:0070118 biolink:NamedThing organellar chromatophore thylakoid membrane The lipid bilayer membrane of any thylakoid within an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore thylakoid membrane cellular_component owl:Class GO:0035006 biolink:NamedThing melanization defense response The blackening of the wounded area of the cuticle or the surface of invading pathogens, parasites or parasitoids, resulting from a proteolytic cascade leading to the de novo synthesis and deposition of melanin. tmpzr1t_l9r_go_relaxed.owl melanization defence response biological_process owl:Class GO:2000228 biolink:NamedThing positive regulation of pancreatic A cell differentiation Any process that activates or increases the frequency, rate or extent of pancreatic A cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of pancreatic alpha cell differentiation mah 2010-11-09T03:43:42Z biological_process owl:Class GO:0032966 biolink:NamedThing negative regulation of collagen biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl negative regulation of collagen synthesis|negative regulation of collagen biosynthesis|negative regulation of collagen anabolism|negative regulation of collagen formation biological_process owl:Class GO:0047005 biolink:NamedThing 16-alpha-hydroxysteroid dehydrogenase activity Catalysis of the reaction: NADP+ + 16-alpha-hydroxysteroid = NADPH + H+ + 16-oxosteroid. tmpzr1t_l9r_go_relaxed.owl 16alpha-hydroxysteroid dehydrogenase activity|16alpha-hydroxy steroid dehydrogenase activity|16alpha-hydroxysteroid:NAD(P)+ 16-oxidoreductase activity MetaCyc:1.1.1.147-RXN|EC:1.1.1.147 molecular_function owl:Class GO:0047979 biolink:NamedThing hexose oxidase activity Catalysis of the reaction: hexose + O2 = aldono-1,5-lactone + H202. tmpzr1t_l9r_go_relaxed.owl D-hexose:oxygen 1-oxidoreductase activity EC:1.1.3.5|MetaCyc:HEXOSE-OXIDASE-RXN molecular_function owl:Class GO:0051930 biolink:NamedThing regulation of sensory perception of pain Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034135 biolink:NamedThing regulation of toll-like receptor 2 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 2 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 2 signalling pathway|regulation of TLR2 signaling pathway biological_process owl:Class GO:0090071 biolink:NamedThing negative regulation of ribosome biogenesis Any process that decreases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T10:32:17Z biological_process owl:Class GO:0047000 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconate 6-dehydrogenase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate + NADP(+) = (4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-D-gluconate:NADP+ 6-oxidoreductase activity|2-keto-3-deoxy-D-gluconate dehydrogenase activity EC:1.1.1.126|MetaCyc:1.1.1.126-RXN|RHEA:15109|KEGG_REACTION:R01543 molecular_function owl:Class GO:0009829 biolink:NamedThing cell wall modification involved in fruit ripening The series of events resulting in chemical or structural alterations of existing cell walls that contribute to fruit ripening. tmpzr1t_l9r_go_relaxed.owl cell wall modification during ripening biological_process owl:Class GO:0009433 biolink:NamedThing bacterial-type flagellum basal body, C ring Cytoplasmic ring located at the base of the bacterial-type flagellar basal body; acts as a rotor; includes three switch proteins, which generate torque and can change their conformational state in a bimodal fashion, so that the motor direction can switch between clockwise and counterclockwise. tmpzr1t_l9r_go_relaxed.owl flagellar basal body, C ring|flagellin-based flagellum basal body, C ring cellular_component owl:Class GO:0018976 biolink:NamedThing 1,2,3-tribromopropane metabolic process The chemical reactions and pathways involving 1,2,3-tribromopropane, a toxic and volatile organic compound commonly used as a nematocide in agriculture. tmpzr1t_l9r_go_relaxed.owl 1,2,3-tribromopropane metabolism UM-BBD_pathwayID:tbp biological_process owl:Class GO:0006179 biolink:NamedThing guanosine salvage Any process that generates guanosine, guanine riboside, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl guanine, xanthine and their nucleoside salvage biological_process owl:Class GO:0046114 biolink:NamedThing guanosine biosynthetic process The chemical reactions and pathways resulting in the formation of guanine, guanine riboside, a nucleoside with a wide species distribution. tmpzr1t_l9r_go_relaxed.owl guanosine biosynthesis|guanosine synthesis|guanosine formation|guanosine anabolism biological_process owl:Class GO:1902670 biolink:NamedThing carbon dioxide binding Binding to carbon dioxide. tmpzr1t_l9r_go_relaxed.owl CO2 binding bhm 2014-02-04T10:38:41Z molecular_function owl:Class GO:0043644 biolink:NamedThing tetracycline biosynthetic process The chemical reactions and pathways resulting in the formation of tetracycline, (4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, a broad-spectrum antibiotic produced by streptomyces bacteria that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). tmpzr1t_l9r_go_relaxed.owl tetracyclin biosynthetic process|tetracyclin biosynthesis biological_process owl:Class GO:0048506 biolink:NamedThing regulation of timing of meristematic phase transition Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032677 biolink:NamedThing regulation of interleukin-8 production Any process that modulates the frequency, rate, or extent of interleukin-8 production. tmpzr1t_l9r_go_relaxed.owl regulation of IL-8 production|regulation of interleukin-8 secretion|regulation of interleukin-8 biosynthetic process GO:2000482|GO:0045414 biological_process owl:Class GO:0021792 biolink:NamedThing chemoattraction of branchiomotor axon The process in which a branchiomotor neuron growth cone is directed to a specific target site in response to an attractive chemical signal. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis of branchiomotor axon biological_process owl:Class GO:0001827 biolink:NamedThing inner cell mass cell fate commitment The cell fate commitment of precursor cells that will become inner cell mass cells. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, compacted morula ; EMAP:13' and 'TS4, inner cell mass ; EMAP:14'. biological_process owl:Class GO:0005537 biolink:NamedThing mannose binding Binding to mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans. tmpzr1t_l9r_go_relaxed.owl mannose binding lectin Reactome:R-HSA-947991 molecular_function owl:Class GO:0016234 biolink:NamedThing inclusion body A discrete intracellular part formed of aggregated molecules such as proteins or other biopolymers. tmpzr1t_l9r_go_relaxed.owl cellular inclusion|neuronal cytoplasmic inclusion Wikipedia:Inclusion_bodies|NIF_Subcellular:sao120573470 cellular_component owl:Class GO:2000649 biolink:NamedThing regulation of sodium ion transmembrane transporter activity Any process that modulates the frequency, rate or extent of sodium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of sodium transporter activity yaf 2011-04-28T08:42:53Z biological_process owl:Class GO:0098777 biolink:NamedThing protein secretion by the type VIII secretion system Protein secretion through the outer membrane via the mechanism used for the secretion of curli subunits. tmpzr1t_l9r_go_relaxed.owl T8SS This term is defined so as to leave open the possibility that things other than curli subunits are secreted via same secretory system as that used by curli subunits. biological_process owl:Class GO:0072575 biolink:NamedThing epithelial cell proliferation involved in liver morphogenesis The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population that contributes to the shaping of the liver. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-02T03:37:50Z biological_process owl:Class GO:0010887 biolink:NamedThing negative regulation of cholesterol storage Any process that decreases the rate or extent of cholesterol storage. Cholesterol storage is the accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl negative regulation of cholesterol sequestration biological_process owl:Class GO:0050083 biolink:NamedThing malyl-CoA lyase activity Catalysis of the reaction: (3S)-3-carboxy-3-hydroxypropanoyl-CoA = acetyl-CoA + glyoxylate. tmpzr1t_l9r_go_relaxed.owl malyl-coenzyme A lyase activity|(3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase activity|(3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase (acetyl-CoA-forming) MetaCyc:MALYL-COA-LYASE-RXN|EC:4.1.3.24|RHEA:16629 molecular_function owl:Class GO:0060644 biolink:NamedThing mammary gland epithelial cell differentiation The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:03:07Z biological_process owl:Class GO:0051574 biolink:NamedThing positive regulation of histone H3-K9 methylation Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H3-K9 methylation|stimulation of histone H3-K9 methylation|upregulation of histone H3-K9 methylation|up-regulation of histone H3-K9 methylation|activation of histone H3-K9 methylation biological_process owl:Class GO:0000449 biolink:NamedThing endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S) Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the Large Subunit (LSU) rRNA, and the 5S rRNA, in that order, from 5' to 3' along the primary transcript. For example, primary ribosomal RNA transcripts containing three genes, in this order, are produced in E. coli and other prokaryotic species. Note that the use of the word tricistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903131 biolink:NamedThing mononuclear cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a mononuclear cell. tmpzr1t_l9r_go_relaxed.owl cls 2014-06-25T15:47:09Z biological_process owl:Class GO:0016728 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a disulfide group. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on CH or CH2 groups, disulphide as acceptor EC:1.17.4.- molecular_function owl:Class GO:0051138 biolink:NamedThing positive regulation of NK T cell differentiation Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of natural T cell differentiation|stimulation of NK T cell differentiation|up-regulation of NK T cell differentiation|activation of NK T cell differentiation|positive regulation of NKT cell differentiation|upregulation of NK T cell differentiation|positive regulation of NK T-lymphocyte differentiation|positive regulation of NT cell differentiation|positive regulation of NK T-cell differentiation|positive regulation of NK T cell development|positive regulation of natural killer T cell differentiation|positive regulation of NK T lymphocyte differentiation|up regulation of NK T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015019 biolink:NamedThing heparan-alpha-glucosaminide N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + heparan alpha-D-glucosaminide = CoA + heparan N-acetyl-alpha-D-glucosaminide. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:heparan-alpha-D-glucosaminide N-acetyltransferase activity|acetyl-CoA:alpha-glucosaminide N-acetyltransferase activity|heparin-alpha-glucosaminide N-acetyltransferase activity Reactome:R-HSA-9036056|Reactome:R-HSA-2090085|MetaCyc:2.3.1.78-RXN|RHEA:15125|EC:2.3.1.78|Reactome:R-HSA-1678660|Reactome:R-HSA-2263492 molecular_function owl:Class GO:0039626 biolink:NamedThing viral intermediate capsid The intermediate layer of a triple concentric icosahedral capsid. Intermediate capsids are part of reoviridae virions. tmpzr1t_l9r_go_relaxed.owl intermediate capsid bf 2012-07-18T04:06:25Z cellular_component owl:Class GO:0140668 biolink:NamedThing positive regulation of oxytocin production Any process that activates or increases the frequency, rate or extent of production of oxytocin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21535 pg 2021-06-24T11:31:26Z biological_process owl:Class GO:0031746 biolink:NamedThing type 1 cysteinyl leukotriene receptor binding Binding to a type 1 cysteinyl leukotriene receptor. tmpzr1t_l9r_go_relaxed.owl type 1 cysteinyl leukotriene receptor ligand molecular_function owl:Class GO:0003997 biolink:NamedThing acyl-CoA oxidase activity Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl fatty acyl-CoA oxidase activity|acyl coenzyme A oxidase activity|fatty acyl-coenzyme A oxidase activity|acyl-CoA:oxygen 2-oxidoreductase activity Reactome:R-HSA-2066787|Reactome:R-HSA-192335|MetaCyc:ACYL-COA-OXIDASE-RXN|Reactome:R-HSA-390256|RHEA:38959|EC:1.3.3.6|Reactome:R-HSA-193369 molecular_function owl:Class GO:0099621 biolink:NamedThing undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase activity Catalysis of the reaction: UDP-4-deoxy-4-formamido-beta-L-arabinopyranose + ditrans,octacis-undecaprenyl phosphate = UDP + 4-deoxy-4-formamido-alpha-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate. tmpzr1t_l9r_go_relaxed.owl undecaprenyl phosphate-L-Ara4FN transferase activity|Ara4FN transferase activity|undecaprenyl-phosphate Ara4FN transferase activity EC:2.4.2.53|MetaCyc:RXN0-3521|RHEA:27722 GO:0103019 molecular_function owl:Class GO:0016573 biolink:NamedThing histone acetylation The modification of a histone by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010239 biolink:NamedThing chloroplast mRNA processing Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071209 biolink:NamedThing U7 snRNA binding Binding to a U7 small nuclear RNA (U7 snRNA). tmpzr1t_l9r_go_relaxed.owl Note that this term may be useful for annotating other small nuclear RNAs (snRNAs). mah 2009-11-25T01:46:50Z molecular_function owl:Class GO:0047492 biolink:NamedThing xanthan lyase activity Catalysis of the reaction: xanthan = oligosaccharide with 4-deoxy-alpha-L-threo-hex-4-enuronosyl end + pyruvylate mannose. This reaction is the eliminative cleavage of the terminal beta-D-mannosyl-beta-D-1,4-glucuronosyl linkage of the side-chain of the polysaccharide xanthan, leaving a 4-deoxy-alpha-L-threo-hex-4-enuronosyl group at the terminus of the side-chain. tmpzr1t_l9r_go_relaxed.owl MetaCyc:4.2.2.12-RXN|EC:4.2.2.12 molecular_function owl:Class GO:0015293 biolink:NamedThing symporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl symport|cotransporter activity|porter activity molecular_function owl:Class GO:1903594 biolink:NamedThing negative regulation of histamine secretion by mast cell Any process that stops, prevents or reduces the frequency, rate or extent of histamine secretion by mast cell. tmpzr1t_l9r_go_relaxed.owl inhibition of histamine secretion by mast cell|down-regulation of histamine secretion by mast cell|downregulation of histamine secretion by mast cell|down regulation of histamine secretion by mast cell als 2014-11-06T13:19:18Z biological_process owl:Class GO:0044389 biolink:NamedThing ubiquitin-like protein ligase binding Binding to a ubiquitin-like protein ligase, such as ubiquitin-ligase. tmpzr1t_l9r_go_relaxed.owl small conjugating protein ligase binding|E3 protein ligase binding jl 2011-12-15T04:33:20Z molecular_function owl:Class GO:0006751 biolink:NamedThing glutathione catabolic process The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. tmpzr1t_l9r_go_relaxed.owl glutathione breakdown|glutathione degradation|glutathione catabolism biological_process owl:Class GO:0090425 biolink:NamedThing acinar cell differentiation The epithelial cell differentiation process in which a relatively unspecialized cell acquires specialized features of an acinar cell, a secretory cell that is grouped together with other cells of the same type to form grape-shaped clusters known as acini. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-04T09:24:48Z biological_process owl:Class GO:0036154 biolink:NamedThing diacylglycerol acyl-chain remodeling Remodeling the acyl chains of diacylglycerol, through sequential deacylation and re-acylation reactions, to generate diacylglycerol containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl diglyceride acyl-chain remodeling bf 2012-03-14T02:53:14Z biological_process owl:Class GO:0003139 biolink:NamedThing secondary heart field specification The process that results in the delineation of a specific region of the lateral mesoderm into the area which will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract). tmpzr1t_l9r_go_relaxed.owl second heart field specification|anterior heart field specification|SHF specification tb 2009-09-22T03:47:56Z biological_process owl:Class GO:0032692 biolink:NamedThing negative regulation of interleukin-1 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 production. tmpzr1t_l9r_go_relaxed.owl inhibition of interleukin-1 production|negative regulation of IL-1 production|down-regulation of interleukin-1 production|negative regulation of interleukin-1 biosynthetic process|negative regulation of interleukin-1 secretion|downregulation of interleukin-1 production|down regulation of interleukin-1 production GO:0045361|GO:0050711 biological_process owl:Class GO:0047526 biolink:NamedThing 2'-hydroxyisoflavone reductase activity Catalysis of the reaction: vestitone + NADP+ = 2'-hydroxyformononetin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH:2'-hydroxyisoflavone oxidoreductase activity|vestitone:NADP+ oxidoreductase activity|2',7-dihydroxy-4',5'-methylenedioxyisoflavone reductase activity|isoflavone reductase activity RHEA:22560|EC:1.3.1.45|MetaCyc:2-HYDROXYISOFLAVONE-REDUCTASE-RXN molecular_function owl:Class GO:0046486 biolink:NamedThing glycerolipid metabolic process The chemical reactions and pathways involving glycerolipids, any lipid with a glycerol backbone. Diacylglycerol and phosphatidate are key lipid intermediates of glycerolipid biosynthesis. tmpzr1t_l9r_go_relaxed.owl glycerolipid metabolism biological_process owl:Class GO:0070811 biolink:NamedThing glycerol-2-phosphate transmembrane transport The process in which glycerol-2-phosphate is transported across a membrane. Glycerol-2-phosphate is a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol-2-phosphate transport mah 2009-07-08T04:57:38Z biological_process owl:Class GO:0009168 biolink:NamedThing purine ribonucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine ribonucleoside monophosphate formation|purine ribonucleoside monophosphate biosynthesis|purine ribonucleoside monophosphate anabolism|purine ribonucleoside monophosphate synthesis biological_process owl:Class GO:0140341 biolink:NamedThing phosphatidylethanolamine floppase activity Catalysis of the movement of phosphatidylethanolamine from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl phosphatidylethanolamine floppase activity (cytosolic to exoplasmic leaftlet) pg 2019-05-16T11:40:45Z molecular_function owl:Class GO:0071025 biolink:NamedThing RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs. tmpzr1t_l9r_go_relaxed.owl aberrant RNA catabolic process|RNA quality control krc 2009-07-28T03:10:28Z biological_process owl:Class GO:0032936 biolink:NamedThing SREBP-SCAP complex A protein complex formed by the association of sterol regulatory element binding protein (SREBP) and SREBP-cleavage-activating protein (SCAP) in the ER membrane; in the absence of sterols, the SREBP-SCAP complex is packaged into COPII vesicles and travels to the Golgi apparatus to be processed. tmpzr1t_l9r_go_relaxed.owl Sre1-Scp1 complex cellular_component owl:Class GO:0034181 biolink:NamedThing positive regulation of toll-like receptor 13 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 13 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 13 signalling pathway|positive regulation of TLR13 signaling pathway biological_process owl:Class GO:0004351 biolink:NamedThing glutamate decarboxylase activity Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2. tmpzr1t_l9r_go_relaxed.owl L-glutamic acid decarboxylase activity|cysteic acid decarboxylase activity|aspartic alpha-decarboxylase|L-glutamate alpha-decarboxylase activity|L-glutamic decarboxylase activity|L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)|L-aspartate-alpha-decarboxylase activity|L-glutamate 1-carboxy-lyase activity|gamma-glutamate decarboxylase activity EC:4.1.1.15|RHEA:17785|Reactome:R-HSA-888577|MetaCyc:GLUTDECARBOX-RXN|Reactome:R-HSA-888572 molecular_function owl:Class GO:0043472 biolink:NamedThing IgD binding Binding to an immunoglobulin of a D isotype. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044824 biolink:NamedThing retroviral 3' processing activity The catalysis of the removal of two di- or tri-nucleotides from each 3' end of double-stranded viral DNA, exposing recessed 3' hydroxyls. tmpzr1t_l9r_go_relaxed.owl 3' processing reaction|3'-processing activity This reaction may serve to remove heterogeneous extra bases from the viral DNA end, and to stabilize the integrase-DNA complex. The chemistry of cleavage is a simple hydrolysis by single-step transesterification. jl 2014-02-04T14:51:24Z molecular_function owl:Class GO:0048937 biolink:NamedThing lateral line nerve glial cell development The process aimed at the progression of a lateral line glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045227 biolink:NamedThing capsule polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl capsular polysaccharide biosynthetic process|capsule polysaccharide synthesis|capsule polysaccharide biosynthesis|capsule polysaccharide anabolism|capsule polysaccharide formation|capsular polysaccharide biosynthesis biological_process owl:Class GO:2000981 biolink:NamedThing negative regulation of inner ear receptor cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of inner ear receptor cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of inner ear hair cell differentiation yaf 2011-08-03T02:38:47Z biological_process owl:Class GO:0015541 biolink:NamedThing secondary active cyanate transmembrane transporter activity Enables the transfer of cyanate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl cyanate porter activity molecular_function owl:Class GO:0031946 biolink:NamedThing regulation of glucocorticoid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042440 biolink:NamedThing pigment metabolic process The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. tmpzr1t_l9r_go_relaxed.owl pigment metabolism biological_process owl:Class GO:1905485 biolink:NamedThing positive regulation of motor neuron migration Any process that activates or increases the frequency, rate or extent of motor neuron migration. tmpzr1t_l9r_go_relaxed.owl upregulation of motor neuron migration|up regulation of motor neuron migration|activation of motor neuron migration|up-regulation of motor neuron migration hbye 2016-09-23T12:50:19Z biological_process owl:Class GO:0044631 biolink:NamedThing positive regulation of complement activation, lectin pathway in other organism Any process that activates or increases the frequency, rate or extent of complement activation by the lectin pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T01:17:33Z biological_process owl:Class GO:0045587 biolink:NamedThing negative regulation of gamma-delta T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of gamma-delta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of gamma-delta T-lymphocyte differentiation|negative regulation of gamma-delta T lymphocyte differentiation|downregulation of gamma-delta T cell differentiation|down-regulation of gamma-delta T cell differentiation|negative regulation of gamma-delta T cell development|inhibition of gamma-delta T cell differentiation|down regulation of gamma-delta T cell differentiation|negative regulation of gamma-delta T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015691 biolink:NamedThing cadmium ion transport The directed movement of cadmium (Cd) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl cadmium transport biological_process owl:Class GO:0000041 biolink:NamedThing transition metal ion transport The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. tmpzr1t_l9r_go_relaxed.owl transition metal transport biological_process owl:Class GO:0017174 biolink:NamedThing glycine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine. tmpzr1t_l9r_go_relaxed.owl glycine methyltransferase activity|S-adenosyl-L-methionine:glycine methyltransferase activity|GNMT|S-adenosyl-L-methionine:glycine N-methyltransferase activity MetaCyc:2.1.1.162-RXN|EC:2.1.1.162|EC:2.1.1.156|MetaCyc:GLYCINE-N-METHYLTRANSFERASE-RXN|RHEA:19937|Reactome:R-HSA-6798317|KEGG_REACTION:R00367|EC:2.1.1.20 molecular_function owl:Class GO:0098636 biolink:NamedThing protein complex involved in cell adhesion Any protein complex that is capable of carrying out some part of the process of cell adhesion to the cell matrix or to another cell. tmpzr1t_l9r_go_relaxed.owl cell adhesion complex GO:1990307 cellular_component owl:Class GO:0062239 biolink:NamedThing heterochromatin-nuclear membrane anchor activity Binding to heterochromatin and the nuclear inner membrane, in order to establish and maintain the heterochromatin location and organization. tmpzr1t_l9r_go_relaxed.owl heterochromatin-nuclear membrane tether activity|nuclear membrane-heterochromatin tether activity|nuclear membrane-heterochromatin anchor activity dph 2020-04-20T18:20:36Z molecular_function owl:Class GO:0140707 biolink:NamedThing chromatin-nuclear membrane anchor activity Binding to chromatin and the nuclear inner membrane, in order to establish and maintain the heterochromatin location and organization, or to enable equal segregation of the nuclear membrane during mitosis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22081 pg 2021-09-02T06:18:21Z molecular_function owl:Class GO:0106150 biolink:NamedThing zearalenone biosynthetic process The chemical reactions and pathways resulting in the formation of zearalenone, a mycotoxin produced by several Fusarium species, is most commonly found as a contaminant in stored grain and has chronic estrogenic effects on mammals. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-14T17:08:18Z biological_process owl:Class GO:0033068 biolink:NamedThing macrolide biosynthetic process The chemical reactions and pathways leading to the formation of macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl macrolide anabolism|macrolide formation|macrolide synthesis|macrolide biosynthesis biological_process owl:Class GO:0075227 biolink:NamedThing regulation of encysted zoospore germination Any process that modulates the frequency, rate or extent of an encysted zoospore germination. tmpzr1t_l9r_go_relaxed.owl modulation of encysted zoospore germination on or near host|regulation of encysted zoospore germination on or near host biological_process owl:Class GO:0060472 biolink:NamedThing positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration Any process that activates or increases the frequency, rate or extent of cortical granule exocytosis by directing movement of calcium ions (Ca2+) into the cytosol. tmpzr1t_l9r_go_relaxed.owl positive regulation of cortical granule exocytosis by elevation of cytosolic calcium ion concentration biological_process owl:Class GO:0090732 biolink:NamedThing cofilin-actin rod A cellular structure consisting of parallel, hexagonally arranged actin tubules, comprising filamentous actin and disulfide cross-linked cofilin multimers. tmpzr1t_l9r_go_relaxed.owl tb 2017-01-31T17:44:04Z cellular_component owl:Class GO:0031002 biolink:NamedThing actin rod A cellular structure consisting of parallel, hexagonally arranged actin tubules, comprising filamentous actin and associated proteins. Actin rod structures are found in diverse organisms, having been observed in spores of Dictyostelium discoideum, Drosophila melanogaster oocytes, as well as in numerous animal cells under stress conditions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021558 biolink:NamedThing trochlear nerve development The process whose specific outcome is the progression of the trochlear nerve over time, from its formation to the mature structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle. tmpzr1t_l9r_go_relaxed.owl cranial nerve IV development|cranial nerve 4 development|CN IV development biological_process owl:Class GO:0043165 biolink:NamedThing Gram-negative-bacterium-type cell outer membrane assembly The assembly of an outer membrane of the type formed in Gram-negative bacteria. This membrane is enriched in polysaccharide and protein, and the outer leaflet of the membrane contains specific lipopolysaccharide structures. tmpzr1t_l9r_go_relaxed.owl cell outer membrane biogenesis biological_process owl:Class GO:1903143 biolink:NamedThing adrenomedullin receptor complex A transmembrane, G protein-coupled signalling receptor complex which is capable of adrenomedullin receptor activity. tmpzr1t_l9r_go_relaxed.owl adrenomedullin receptor AM1 complex|adrenomedullin receptor AM2 complex An example of this is RAMP2 in human (O60895) in PMID:22102369 (inferred from direct assay). bhm 2014-07-02T08:56:47Z cellular_component owl:Class GO:0042363 biolink:NamedThing fat-soluble vitamin catabolic process The chemical reactions and pathways resulting in the breakdown of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. tmpzr1t_l9r_go_relaxed.owl fat-soluble vitamin catabolism|fat-soluble vitamin degradation|fat-soluble vitamin breakdown biological_process owl:Class GO:0004458 biolink:NamedThing D-lactate dehydrogenase (cytochrome) activity Catalysis of the reaction: (R)-lactate + 2 [Fe(III)cytochrome c] = 2 [Fe(II)cytochrome c] + 2 H+ + pyruvate. tmpzr1t_l9r_go_relaxed.owl cytochrome-dependent D-(-)-lactate dehydrogenase activity|D-lactate-cytochrome c reductase activity|D-lactate (cytochrome) dehydrogenase activity|D-(-)-lactic cytochrome c reductase activity|(R)-lactate:ferricytochrome-c 2-oxidoreductase activity|lactic acid dehydrogenase activity|D-lactate ferricytochrome c oxidoreductase activity RHEA:13521|EC:1.1.2.4|MetaCyc:D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN molecular_function owl:Class GO:0034212 biolink:NamedThing peptide N-acetyltransferase activity Catalysis of the acetylation of an amino acid residue of a peptide or protein, according to the reaction: acetyl-CoA + peptide = CoA + N-acetylpeptide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-3371554 molecular_function owl:Class GO:0046252 biolink:NamedThing toluene biosynthetic process The chemical reactions and pathways resulting in the formation of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products. tmpzr1t_l9r_go_relaxed.owl toluene synthesis|toluene biosynthesis|toluene anabolism|toluene formation This term was reinstated from obsolete. biological_process owl:Class GO:0019145 biolink:NamedThing aminobutyraldehyde dehydrogenase activity Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl 4-aminobutanal dehydrogenase activity|4-aminobutyraldehyde dehydrogenase activity|ABAL dehydrogenase activity|4-aminobutanal:NAD+ 1-oxidoreductase activity|gamma-aminobutyraldehyde dehydroganase activity MetaCyc:AMINOBUTDEHYDROG-RXN|EC:1.2.1.19|RHEA:19105 molecular_function owl:Class GO:0102409 biolink:NamedThing sn-2-glycerol-3-phosphate C16:0-CoA acyl transferase activity Catalysis of the reaction: behenoyl-CoA + sn-glycerol 3-phosphate(2-) <=> coenzyme A + 2-docosanoyl-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13736 molecular_function owl:Class GO:0061718 biolink:NamedThing glucose catabolic process to pyruvate The chemical reactions and pathways resulting in the breakdown of glucose, with the production of pyruvate. tmpzr1t_l9r_go_relaxed.owl glucose catabolism to pyruvate dph 2015-06-30T13:17:26Z biological_process owl:Class GO:0072683 biolink:NamedThing T cell extravasation The migration of a T cell from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte extravasation|T-cell extravasation|T lymphocyte extravasation mah 2011-02-22T04:05:45Z biological_process owl:Class GO:0007383 biolink:NamedThing specification of segmental identity, antennal segment The specification of the characteristic structures of the antennal segment following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'antennal segment ; FBbt:00000009'. biological_process owl:Class GO:0004781 biolink:NamedThing sulfate adenylyltransferase (ATP) activity Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate. tmpzr1t_l9r_go_relaxed.owl ATP-sulfurylase activity|sulfate adenylate transferase activity|sulphate adenylyltransferase (ATP) activity|adenosinetriphosphate sulfurylase activity|adenosine-5'-triphosphate sulfurylase activity|adenylylsulfate pyrophosphorylase activity|ATP:sulfate adenylyltransferase activity|ATP sulfurylase activity|sulfurylase activity Reactome:R-HSA-174392|MetaCyc:SULFATE-ADENYLYLTRANS-RXN|RHEA:18133|EC:2.7.7.4|Reactome:R-HSA-3560794 molecular_function owl:Class GO:0004779 biolink:NamedThing sulfate adenylyltransferase activity Catalysis of the transfer of an adenylyl group from an adenosine nucleotide (ATP or ADP) to sulfate, forming adenylylsulfate. tmpzr1t_l9r_go_relaxed.owl sulphate adenylyltransferase activity molecular_function owl:Class GO:0070631 biolink:NamedThing spindle pole body localization Any process in which a spindle pole body is transported to, or maintained in, a specific location. A spindle pole body is a type of microtubule organizing center found in fungal cells. tmpzr1t_l9r_go_relaxed.owl spindle pole body localisation|maintenance of spindle pole body localization https://github.com/geneontology/go-ontology/issues/19149 mah 2009-05-06T02:21:38Z GO:1990944|GO:0071790 biological_process owl:Class GO:0061842 biolink:NamedThing microtubule organizing center localization Any process in which the microtubule organizing center is transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl MTOC localization|MTOC polarity|microtubule organizing center polarity biological_process owl:Class GO:0090224 biolink:NamedThing regulation of spindle organization Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle. tmpzr1t_l9r_go_relaxed.owl regulation of spindle organisation tb 2010-01-13T11:04:53Z biological_process owl:Class GO:0015114 biolink:NamedThing phosphate ion transmembrane transporter activity Enables the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl phosphate transmembrane transporter activity RHEA:32823 pr 2012-11-22T15:43:10Z GO:1901677 molecular_function owl:Class GO:0052681 biolink:NamedThing alpha-bisabolene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,R)-alpha-bisabolene + diphosphate. tmpzr1t_l9r_go_relaxed.owl (2E,6E)-farnesyl-diphosphate diphosphate-lyase [(E)-alpha-bisabolene-forming] activity|bisabolene synthase activity EC:4.2.3.38|RHEA:25436|KEGG_REACTION:R08370|MetaCyc:RXN-8550 molecular_function owl:Class GO:0009305 biolink:NamedThing protein biotinylation The addition of biotin (vitamin B7 / vitamin H) to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid biotinylation biological_process owl:Class GO:0022016 biolink:NamedThing pallium glioblast division The division of a glioblast in the pallium. A glioblast is a dividing precursor cell that gives rise to glial cells. tmpzr1t_l9r_go_relaxed.owl glioblast cell division in pallium biological_process owl:Class GO:0102522 biolink:NamedThing tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 4-demethylwyosine37 in tRNAPhe <=> 5'-S-methyl-5'-thioadenosine + H+ + 7-[(3S)-3-amino-3-carboxypropyl]-4-demethylwyosine37 in tRNAPhe. tmpzr1t_l9r_go_relaxed.owl RHEA:36355|MetaCyc:RXN-14518|EC:2.5.1.114 molecular_function owl:Class GO:1901871 biolink:NamedThing ecgonone methyl ester catabolic process The chemical reactions and pathways resulting in the breakdown of ecgonone methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonone methyl ester catabolism|ecgonone methyl ester breakdown|ecgonone methyl ester degradation ms 2013-02-04T11:58:34Z biological_process owl:Class GO:0070256 biolink:NamedThing negative regulation of mucus secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of mucus from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl negative regulation of mucus production biological_process owl:Class GO:0009094 biolink:NamedThing L-phenylalanine biosynthetic process The chemical reactions and pathways resulting in the formation of L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine synthesis|phenylalanine biosynthetic process|phenylalanine biosynthesis|L-phenylalanine biosynthesis|phenylalanine biosynthetic process, shikimate pathway|phenylalanine biosynthetic process, prephenate pathway|L-phenylalanine anabolism|L-phenylalanine formation GO:0019275|GO:0019274 biological_process owl:Class GO:1902447 biolink:NamedThing negative regulation of shade avoidance Any process that stops, prevents or reduces the frequency, rate or extent of shade avoidance. tmpzr1t_l9r_go_relaxed.owl down-regulation of shade avoidance|down regulation of shade avoidance|inhibition of shade avoidance|downregulation of shade avoidance dhl 2013-10-15T21:04:51Z biological_process owl:Class GO:1902446 biolink:NamedThing regulation of shade avoidance Any process that modulates the frequency, rate or extent of shade avoidance. tmpzr1t_l9r_go_relaxed.owl dhl 2013-10-15T21:04:36Z biological_process owl:Class GO:1902891 biolink:NamedThing negative regulation of root hair elongation Any process that stops, prevents or reduces the frequency, rate or extent of root hair elongation. tmpzr1t_l9r_go_relaxed.owl inhibition of root hair elongation|down regulation of root hair elongation|downregulation of root hair elongation|down-regulation of root hair elongation als 2014-04-07T13:46:47Z biological_process owl:Class GO:1903778 biolink:NamedThing protein localization to vacuolar membrane A process in which a protein is transported to, or maintained in, a location within a vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl protein localization in vacuolar membrane|protein localisation in vacuolar membrane|protein localisation to vacuolar membrane mah 2015-01-07T13:15:54Z biological_process owl:Class GO:0033519 biolink:NamedThing phytyl diphosphate metabolic process The chemical reactions and pathways involving phytyl diphosphate, (2E)-3,7,11,15-tetramethylhexadec-2-en-1-yl trihydrogen diphosphate. tmpzr1t_l9r_go_relaxed.owl phytyl diphosphate metabolism biological_process owl:Class GO:0046186 biolink:NamedThing acetaldehyde biosynthetic process The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol. tmpzr1t_l9r_go_relaxed.owl acetaldehyde formation|acetaldehyde synthesis|acetaldehyde anabolism|acetaldehyde biosynthesis biological_process owl:Class GO:0006117 biolink:NamedThing acetaldehyde metabolic process The chemical reactions and pathways involving acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol. tmpzr1t_l9r_go_relaxed.owl acetaldehyde metabolism|ethanal metabolism|ethanal metabolic process biological_process owl:Class GO:0052757 biolink:NamedThing chondroitin hydrolase activity Catalysis of the hydrolysis of hexosaminic linkages in chondroitin, a linear polymer structure composed of the repeating disaccharide unit [->4)-D-glucuronic acid-(1->3)-N-acetyl-D-galactosamine-(1-], also written as [->4GlcUA1->3GalNAc1-]. tmpzr1t_l9r_go_relaxed.owl chondroitin endo-beta-galactosaminidase activity ai 2011-09-28T10:31:53Z molecular_function owl:Class GO:0033931 biolink:NamedThing endogalactosaminidase activity Catalysis of the endohydrolysis of (1->4)-alpha-D-galactosaminidic linkages in poly(D-galactosamine). tmpzr1t_l9r_go_relaxed.owl galactosaminoglycan glycanohydrolase activity MetaCyc:3.2.1.109-RXN|EC:3.2.1.109 molecular_function owl:Class GO:1903298 biolink:NamedThing negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of hypoxia-induced intrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of hypoxic stress-induced intrinsic apoptotic signaling pathway|negative regulation of intrinsic apoptotic signaling pathway in response to hypoxia|down-regulation of intrinsic apoptotic signaling pathway in response to hypoxia|protection against hypoxia-induced apoptosis|down regulation of intrinsic apoptotic signaling pathway in response to hypoxia|downregulation of intrinsic apoptotic signaling pathway in response to hypoxia|negative regulation of hypoxia-induced apoptosis|inhibition of intrinsic apoptotic signaling pathway in response to hypoxia bf 2014-08-14T14:47:56Z biological_process owl:Class GO:0009130 biolink:NamedThing pyrimidine nucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside monophosphate synthesis|pyrimidine nucleoside monophosphate anabolism|pyrimidine nucleoside monophosphate formation|pyrimidine nucleoside monophosphate biosynthesis biological_process owl:Class GO:0047329 biolink:NamedThing phosphoramidate-hexose phosphotransferase activity Catalysis of the reaction: hexose + phosphoramidate = hexose 1-phosphate + NH3. tmpzr1t_l9r_go_relaxed.owl phosphoramidic-hexose transphosphorylase activity|phosphoramidate-hexose transphosphorylase activity|phosphoramidate:hexose 1-phosphotransferase activity MetaCyc:2.7.1.62-RXN|EC:2.7.1.62|RHEA:10972 molecular_function owl:Class GO:0098956 biolink:NamedThing intrinsic component of dense core granule membrane The component of the dense core granule membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to dense core granule membrane cellular_component owl:Class GO:0102038 biolink:NamedThing 4-nitrobenzyl alcohol oxidase activity Catalysis of the reaction: 4-nitrobenzyl alcohol + O2 <=> 4-nitrobenzaldehyde + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R362-RXN molecular_function owl:Class GO:0018592 biolink:NamedThing 4-nitrocatechol 4-monooxygenase activity Catalysis of the reaction: 4-nitrocatechol + O2 + 4 e- + 3 H+ = H2O + nitrite + 1,2,4-benzenetriol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0231|EC:1.14.13.166 molecular_function owl:Class GO:1990749 biolink:NamedThing polynucleotide adenylyltransferase activator activity Increases the activity of the enzyme polynucleotide adenylyltransferase. tmpzr1t_l9r_go_relaxed.owl kmv 2015-05-19T15:02:39Z molecular_function owl:Class GO:0008335 biolink:NamedThing female germline ring canal stabilization Maintenance of the structural integrity of the ring canals connecting the female germline cyst. tmpzr1t_l9r_go_relaxed.owl ovarian ring canal stabilization|nurse cell ring canal stabilization biological_process owl:Class GO:0034414 biolink:NamedThing tRNA 3'-trailer cleavage, endonucleolytic Endonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA. tmpzr1t_l9r_go_relaxed.owl tRNA 3'-end cleavage, endonucleolytic|endonucleolytic tRNA 3'-end cleavage|endonucleolytic tRNA 3'-trailer cleavage biological_process owl:Class GO:1901408 biolink:NamedThing negative regulation of phosphorylation of RNA polymerase II C-terminal domain Any process that stops, prevents or reduces the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain. tmpzr1t_l9r_go_relaxed.owl downregulation of generation of hyperphosphorylated CTD of RNA polymerase II|inhibition of hyperphosphorylation of RNA polymerase II C-terminal domain|down-regulation of CTD domain phosphorylation of RNA polymerase II|down-regulation of generation of II(0) form of RNA polymerase II|down regulation of generation of II(0) form of RNA polymerase II|downregulation of generation of II(0) form of RNA polymerase II|down regulation of CTD domain phosphorylation of RNA polymerase II|inhibition of generation of hyperphosphorylated CTD of RNA polymerase II|negative regulation of generation of II(0) form of RNA polymerase II|down regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|down regulation of phosphorylation of RNA polymerase II C-terminal domain|inhibition of generation of II(0) form of RNA polymerase II|inhibition of phosphorylation of RNA polymerase II C-terminal domain|negative regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|down-regulation of hyperphosphorylation of RNA polymerase II C-terminal domain|downregulation of phosphorylation of RNA polymerase II C-terminal domain|negative regulation of generation of hyperphosphorylated CTD of RNA polymerase II|negative regulation of CTD domain phosphorylation of RNA polymerase II|inhibition of CTD domain phosphorylation of RNA polymerase II|down regulation of generation of hyperphosphorylated CTD of RNA polymerase II|downregulation of hyperphosphorylation of RNA polymerase II C-terminal domain|downregulation of CTD domain phosphorylation of RNA polymerase II|down-regulation of phosphorylation of RNA polymerase II C-terminal domain|down-regulation of generation of hyperphosphorylated CTD of RNA polymerase II vw 2012-10-01T14:40:58Z biological_process owl:Class GO:1904561 biolink:NamedThing cellular response to diphenidol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diphenidol stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-08-14T16:09:37Z biological_process owl:Class GO:0002004 biolink:NamedThing secretion of vasopressin involved in fast regulation of systemic arterial blood pressure The regulated release of the hormone vasopressin into the blood stream by the hypothalamus and pituitary gland contributing to fast regulation of blood pressure. tmpzr1t_l9r_go_relaxed.owl secretion of vasopressin during fast regulation of systemic arterial blood pressure|secretion of vasopressin during fast control of blood pressure biological_process owl:Class GO:0030103 biolink:NamedThing vasopressin secretion The regulated release of vasopressin from secretory granules into the blood. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903817 biolink:NamedThing negative regulation of voltage-gated potassium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl down regulation of voltage gated potassium channel activity|negative regulation of voltage-gated potassium ion channel activity|downregulation of voltage-dependent potassium channel activity|downregulation of voltage-sensitive potassium channel|down-regulation of voltage-gated potassium ion channel activity|downregulation of voltage gated potassium channel activity|down-regulation of voltage-sensitive potassium channel|down regulation of voltage-gated potassium channel activity|down regulation of voltage-sensitive potassium channel|negative regulation of voltage-sensitive potassium channel|inhibition of voltage gated potassium channel activity|inhibition of voltage-sensitive potassium channel|negative regulation of voltage gated potassium channel activity|down regulation of voltage-dependent potassium channel activity|negative regulation of voltage-dependent potassium channel activity|down-regulation of voltage-dependent potassium channel activity|inhibition of voltage-gated potassium channel activity|inhibition of voltage-gated potassium ion channel activity|down-regulation of voltage-gated potassium channel activity|down-regulation of voltage gated potassium channel activity|inhibition of voltage-dependent potassium channel activity|down regulation of voltage-gated potassium ion channel activity|downregulation of voltage-gated potassium channel activity|downregulation of voltage-gated potassium ion channel activity sl 2015-01-16T17:22:08Z biological_process owl:Class GO:0002918 biolink:NamedThing negative regulation of peripheral B cell anergy Any process that stops, prevents, or reduces the frequency, rate, or extent of peripheral B cell anergy. tmpzr1t_l9r_go_relaxed.owl down regulation of peripheral B cell anergy|inhibition of peripheral B cell anergy|downregulation of peripheral B cell anergy|down-regulation of peripheral B cell anergy biological_process owl:Class GO:0019148 biolink:NamedThing D-cysteine desulfhydrase activity Catalysis of the reaction: D-cysteine + H2O = sulfide + NH3 + pyruvate. tmpzr1t_l9r_go_relaxed.owl D-cysteine sulfide-lyase (deaminating)|D-cysteine lyase activity|D-cysteine sulfide-lyase (deaminating; pyruvate-forming) EC:4.4.1.15|MetaCyc:DCYSDESULF-RXN|RHEA:11268 molecular_function owl:Class GO:0004119 biolink:NamedThing cGMP-inhibited cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is decreased in the presence of cGMP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004114 biolink:NamedThing 3',5'-cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl 3': 5'-monophosphate phosphodiesterase (cyclic CMP) activity|cyclic AMP phosphodiesterase activity|cyclic 3',5'-phosphodiesterase activity|3',5'-cyclonucleotide phosphodiesterase activity|3', 5'-cyclic nucleoside monophosphate phosphodiesterase activity|nucleoside-3',5-monophosphate phosphodiesterase activity|cyclic nucleotide phosphodiesterase activity|nucleoside 3',5'-cyclic phosphate diesterase activity|cytidine 3':5'-monophosphate phosphodiesterase (cyclic CMP) activity|3',5'-cyclic-nucleotide 5'-nucleotidohydrolase activity|3',5' cyclic-nucleotide phosphodiesterase activity|3':5'-cyclic nucleotide 5'-nucleotidohydrolase activity|PDE|3',5'-nucleotide phosphodiesterase activity|cyclic 3',5'-mononucleotide phosphodiesterase activity|cyclic 3',5-nucleotide monophosphate phosphodiesterase activity|cyclic 3',5'-nucleotide phosphodiesterase activity MetaCyc:3.1.4.17-RXN|EC:3.1.4.17|RHEA:14653|Reactome:R-HSA-162425 molecular_function owl:Class GO:1901074 biolink:NamedThing regulation of engulfment of apoptotic cell Any process that modulates the frequency, rate or extent of engulfment of apoptotic cell. tmpzr1t_l9r_go_relaxed.owl regulation of engulfment of cell corpse|regulation of engulfment of apoptotic cell corpse kmv 2012-07-02T07:32:21Z biological_process owl:Class GO:0072160 biolink:NamedThing nephron tubule epithelial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the nephron tubule as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:40:11Z biological_process owl:Class GO:0035079 biolink:NamedThing polytene chromosome puffing The decondensing (loosening) and swelling of the chromosomal sites of target genes on polytene chromosomes following response to a stimulus, to facilitate sudden bursts of transcriptional activity in response to transient environmental signals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070903 biolink:NamedThing mitochondrial tRNA thio-modification The addition a sulfur atom to a nucleotide in a mitochondrial tRNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-02T04:11:17Z biological_process owl:Class GO:0036125 biolink:NamedThing fatty acid beta-oxidation multienzyme complex A multienzyme complex possessing three kinds of enzymes that catalyze the chain reactions in the fatty acid beta-oxidation cycle, enoyl-CoA hydratase (ECH), 3-hydroxyacyl-CoA dehydrogenase (HACD), and acetyl-CoA C-acyltransferase (KACT). tmpzr1t_l9r_go_relaxed.owl For fatty acid beta-oxidation multienzyme complexes located in the mitochondrial matrix, consider instead the term 'mitochondrial fatty acid beta-oxidation multienzyme complex ; GO:0016507'. bf 2012-02-28T02:10:39Z cellular_component owl:Class GO:2000554 biolink:NamedThing regulation of T-helper 1 cell cytokine production Any process that modulates the frequency, rate or extent of T-helper 1 cell cytokine production. tmpzr1t_l9r_go_relaxed.owl regulation of Th1 cell cytokine production ebc 2011-04-03T07:35:43Z biological_process owl:Class GO:0033404 biolink:NamedThing UUG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UUG codon. tmpzr1t_l9r_go_relaxed.owl leucine tRNA|TTG codon-amino acid adaptor activity Note that in the standard genetic code, TTG codes for leucine. molecular_function owl:Class GO:1905458 biolink:NamedThing positive regulation of lymphoid progenitor cell differentiation Any process that activates or increases the frequency, rate or extent of lymphoid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl up-regulation of lymphoid progenitor cell differentiation|activation of lymphoid progenitor cell differentiation|up regulation of lymphoid progenitor cell differentiation|upregulation of lymphoid progenitor cell differentiation rz 2016-09-16T12:32:55Z biological_process owl:Class GO:0015767 biolink:NamedThing lactose transport The directed movement of lactose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lactose is a disaccharide 4-O-beta-D-galactopyranosyl-D-glucose, and constitutes roughly 5% of the milk in almost all mammals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047479 biolink:NamedThing trypanothione synthase activity Catalysis of the reaction: reduced glutathione + glutathionylspermidine + ATP = trypanothione + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl TSR synthetase activity|glutathionylspermidine:glutathione ligase (ADP-forming) EC:6.3.1.9|MetaCyc:6.3.1.9-RXN|RHEA:21532 molecular_function owl:Class GO:1903723 biolink:NamedThing negative regulation of centriole elongation Any process that stops, prevents or reduces the frequency, rate or extent of centriole elongation. tmpzr1t_l9r_go_relaxed.owl down-regulation of centriole elongation|down regulation of centriole elongation|inhibition of centriole elongation|downregulation of centriole elongation als 2014-12-09T16:36:12Z biological_process owl:Class GO:0050659 biolink:NamedThing N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity Catalysis of the reactions: 3'-phosphoadenylyl sulfate + dermatan = adenosine 3',5'-bisphosphate + dermatan 6'-sulfate and 3'-phosphoadenylyl sulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:dermatan 6'-sulfotransferase activity|N-acetylgalactosamine 4-sulfate 6-O-sulphotransferase activity|GalNAc4S-6ST KEGG_REACTION:R07288|Reactome:R-HSA-2018659|KEGG_REACTION:R02181|MetaCyc:RXN-7953|EC:2.8.2.33|MetaCyc:RXN-7954 Consider instead annotating to the individual reactions: 'chondroitin 6-sulfotransferase activity ; GO:0008459' and 'dermatan 6-sulfotransferase activity ; GO:0036443'. molecular_function owl:Class GO:0032442 biolink:NamedThing phenylcoumaran benzylic ether reductase activity Catalysis of the NADPH-dependent 7-O-4' reduction of phenylcoumaran lignans to the corresponding diphenols; for example, catalysis of the reaction: dehydrodiconiferyl alcohol + NADPH + H+ = isodihydrodehydrodiconiferyl alcohol + NADP+. tmpzr1t_l9r_go_relaxed.owl PCBER activity molecular_function owl:Class GO:0051496 biolink:NamedThing positive regulation of stress fiber assembly Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts. tmpzr1t_l9r_go_relaxed.owl positive regulation of stress fibre formation|positive regulation of stress fibre biosynthesis|up-regulation of stress fiber formation|stimulation of stress fiber formation|activation of stress fiber formation|up regulation of stress fiber formation|upregulation of stress fiber formation biological_process owl:Class GO:0051492 biolink:NamedThing regulation of stress fiber assembly Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts. tmpzr1t_l9r_go_relaxed.owl regulation of stress fibre biosynthesis|regulation of stress fibre formation biological_process owl:Class GO:0005747 biolink:NamedThing mitochondrial respiratory chain complex I A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. tmpzr1t_l9r_go_relaxed.owl GO:0005748 cellular_component owl:Class GO:0046093 biolink:NamedThing deoxycytidine biosynthetic process The chemical reactions and pathways resulting in the formation of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxycytidine anabolism|deoxycytidine formation|deoxycytidine biosynthesis|deoxycytidine synthesis biological_process owl:Class GO:1905802 biolink:NamedThing regulation of cellular response to manganese ion Any process that modulates the frequency, rate or extent of cellular response to manganese ion. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to manganese pga 2017-01-11T14:59:39Z biological_process owl:Class GO:1990558 biolink:NamedThing mitochondrial malonate(1-) transmembrane transport The process in which malonate(1-) is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:52:43Z biological_process owl:Class GO:0019720 biolink:NamedThing Mo-molybdopterin cofactor metabolic process The chemical reactions and pathways involving the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Mo-molybdopterin cofactor metabolism|Moco metabolic process|Moco metabolism biological_process owl:Class GO:0101018 biolink:NamedThing negative regulation of mitotic DNA replication initiation from late origin Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl negative regulation of late replication origin firing mec biological_process owl:Class GO:0101017 biolink:NamedThing regulation of mitotic DNA replication initiation from late origin Any process that modulates the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl regulation of late replication origin firing mec biological_process owl:Class GO:0033203 biolink:NamedThing DNA helicase A complex A homohexameric protein complex that possesses DNA helicase activity; associates with DNA polymerase alpha-primase and translocates in the 5' to 3' direction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043955 biolink:NamedThing 3-hydroxypropionyl-CoA synthetase activity Catalysis of the reaction: 3-hydroxypropionate + ATP + CoA = 3-hydroxypropionyl-CoA + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl AMP-dependent synthetase and ligase:Enoyl-CoA hydratase/isomerase|AMP-dependent synthetase and ligase|enoyl-CoA hydratase/isomerase|acetyl-coenzyme A synthetase/GroES-like domain|acetyl-coenzyme A synthetase|3-hydroxy propionyl-CoA synthetase activity EC:6.2.1.36|RHEA:26534 Note that this function is one of the activities of the trifunctional enzyme propionyl-coenzyme A synthase. See PMID:11821399. molecular_function owl:Class GO:0010139 biolink:NamedThing pyrimidine deoxyribonucleotide salvage The pathway by which pyrimidine bases or pyrimidine deoxyribonucleotides from pyrimidine nucleotide breakdown are converted back to pyrimidine deoxyribonucleotides. The salvage pathway is important where there is no de novo pyrimidine deoxyribonucleotide biosynthesis. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY0-181 biological_process owl:Class GO:0014915 biolink:NamedThing regulation of muscle filament sliding speed involved in regulation of the velocity of shortening in skeletal muscle contraction Any process that modulates the velocity of muscle filament sliding, and consequently contributes to the regulation of the velocity of shortening of skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019927 biolink:NamedThing peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone The cross-linking of a cysteine residue to tryptophyl quinone to form 4'-(S-L-cysteinyl)-L-tryptophyl quinone, a cofactor found at the active site of amine dehydrogenase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0313 biological_process owl:Class GO:0110065 biolink:NamedThing regulation of interphase mitotic telomere clustering Any process that modulates the frequency, rate or extent of mitotic telomere clustering during interphase. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic telomere clustering during interphase kmv 2017-11-17T22:03:40Z biological_process owl:Class GO:1901773 biolink:NamedThing lincomycin catabolic process The chemical reactions and pathways resulting in the breakdown of lincomycin. tmpzr1t_l9r_go_relaxed.owl lincomycin breakdown|lincomycin degradation|lincomycin catabolism yaf 2013-01-15T11:53:57Z biological_process owl:Class GO:0090542 biolink:NamedThing ELYC domain binding Binding to a ELYC protein domain. The ELYC domain is an approximately 150 amino acid sequence which contains a highly conserved tetrapeptide sequence, ELYC. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-14T17:11:29Z molecular_function owl:Class GO:1905242 biolink:NamedThing response to 3,3',5-triiodo-L-thyronine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3,3',5-triiodo-L-thyronine stimulus. tmpzr1t_l9r_go_relaxed.owl response to Liothyronine|response to Liothyronin|response to Liothyroninum sl 2016-06-08T17:42:04Z biological_process owl:Class GO:1905813 biolink:NamedThing negative regulation of motor neuron axon guidance Any process that stops, prevents or reduces the frequency, rate or extent of motor neuron axon guidance. tmpzr1t_l9r_go_relaxed.owl down-regulation of motor neuron axon guidance|down regulation of motor axon guidance|downregulation of motor axon pathfinding|negative regulation of motor axon guidance|down regulation of motor neuron axon guidance|down regulation of motoneuron axon guidance|inhibition of motor neuron axon guidance|inhibition of motoneuron axon guidance|down-regulation of motoneuron axon guidance|downregulation of motoneuron axon guidance|inhibition of motor axon guidance|inhibition of motor axon pathfinding|negative regulation of motoneuron axon guidance|down regulation of motor axon pathfinding|downregulation of motor neuron axon guidance|negative regulation of motor axon pathfinding|downregulation of motor axon guidance|down-regulation of motor axon pathfinding|down-regulation of motor axon guidance hbye 2017-01-12T13:25:21Z biological_process owl:Class GO:0017177 biolink:NamedThing glucosidase II complex A heterodimeric complex that catalyzes the trimming of glucose residues from N-linked core glycans on newly synthesized glycoproteins. tmpzr1t_l9r_go_relaxed.owl alpha-glucosidase II complex Note that alpha-glucosidase I functions as a monomer, and therefore does not have a corresponding cellular component term. cellular_component owl:Class GO:1900030 biolink:NamedThing regulation of pectin biosynthetic process Any process that modulates the frequency, rate or extent of pectin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of pectin anabolism|regulation of pectin biosynthesis|regulation of pectin synthesis|regulation of pectin formation tb 2012-01-13T02:03:37Z biological_process owl:Class GO:0071240 biolink:NamedThing cellular response to food Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:28:35Z biological_process owl:Class GO:0051059 biolink:NamedThing NF-kappaB binding Binding to NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045997 biolink:NamedThing negative regulation of ecdysteroid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ecdysteroids. tmpzr1t_l9r_go_relaxed.owl down regulation of ecdysteroid biosynthetic process|inhibition of ecdysteroid biosynthetic process|negative regulation of ecdysteroid anabolism|down-regulation of ecdysteroid biosynthetic process|negative regulation of ecdysteroid formation|downregulation of ecdysteroid biosynthetic process|negative regulation of ecdysteroid synthesis|negative regulation of ecdysteroid biosynthesis biological_process owl:Class GO:0009828 biolink:NamedThing plant-type cell wall loosening The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing cell wall loosening biological_process owl:Class GO:0045163 biolink:NamedThing clustering of voltage-gated potassium channels The process in which voltage-gated potassium channels become localized together in high densities. In animals, voltage-gated potassium (Kv) channels are clustered beneath the myelin sheath in regions immediately adjacent to paranodes, called juxtaparanodes, and along the inner mesaxon within the internode. tmpzr1t_l9r_go_relaxed.owl Kv channel clustering|clustering of voltage gated potassium channels|voltage-gated potassium channel clustering|clustering of voltage-dependent potassium channels biological_process owl:Class GO:0042907 biolink:NamedThing xanthine transmembrane transporter activity Enables the transfer of xanthine from one side of a membrane to the other. Xanthine (2,6-dihydroxypurine) is a purine formed in the metabolic breakdown of guanine, but is not present in nucleic acids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032919 biolink:NamedThing spermine acetylation The modification of spermine by addition of acetyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901531 biolink:NamedThing hypochlorite binding Binding to hypochlorite. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-24T07:15:22Z molecular_function owl:Class GO:1903089 biolink:NamedThing 5-amino-1-ribofuranosylimidazole-4-carboxamide transmembrane transporter activity Enables the transfer of 5-amino-1-ribofuranosylimidazole-4-carboxamide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl acadesine transporter activity mcc 2014-06-02T20:37:17Z molecular_function owl:Class GO:0003414 biolink:NamedThing chondrocyte morphogenesis involved in endochondral bone morphogenesis The process in which the structures of a chondrocyte that will contribute to bone development are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T08:42:55Z biological_process owl:Class GO:1990018 biolink:NamedThing tail portion of tanycyte Elongated process of a tanycyte, devoid of cytoplasmic extensions, that courses through the hypothalamic nuclei to form small endfoot processes that terminate either on blood vessels or at the pial surface of the brain. A tanycyte is a specialized elongated ventricular ependymal cell. tmpzr1t_l9r_go_relaxed.owl tail portion NIF_Subcellular:sao1749953771 pr 2012-12-19T15:21:20Z cellular_component owl:Class GO:0045309 biolink:NamedThing protein phosphorylated amino acid binding Binding to a phosphorylated amino acid residue within a protein. tmpzr1t_l9r_go_relaxed.owl phosphoprotein amino acid binding molecular_function owl:Class GO:0051219 biolink:NamedThing phosphoprotein binding Binding to a phosphorylated protein. tmpzr1t_l9r_go_relaxed.owl phosphorylated protein binding molecular_function owl:Class GO:0019286 biolink:NamedThing glycine betaine biosynthetic process from glycine The chemical reactions and pathways resulting in the formation of glycine betaine from other compounds, including glycine. tmpzr1t_l9r_go_relaxed.owl glycine betaine anabolism from glycine|glycine betaine synthesis from glycine|N-trimethylglycine biosynthetic process from glycine|N-trimethylglycine biosynthesis from glycine|glycine betaine formation from glycine MetaCyc:P541-PWY biological_process owl:Class GO:0120188 biolink:NamedThing regulation of bile acid secretion Any process that modulates the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-16T22:28:58Z biological_process owl:Class GO:0002019 biolink:NamedThing regulation of renal output by angiotensin The process in which angiotensin directly modulates the rate of urine output by the kidney. tmpzr1t_l9r_go_relaxed.owl angiotensin mediated control of renal output|angiotensin-mediated regulation of renal output|angiotensin mediated regulation of renal output biological_process owl:Class GO:0015474 biolink:NamedThing autotransporter activity Transports a passenger protein from the periplasm to the external milieu; the passenger protein and the porin are the N- and C-terminal regions of the same protein, respectively. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035795 biolink:NamedThing negative regulation of mitochondrial membrane permeability Any process that decreases the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrial membrane impermeabilization|mitochondrial membrane impermeability|negative regulation of transport across mitochondrial membrane bf 2011-04-11T01:45:26Z biological_process owl:Class GO:1901835 biolink:NamedThing positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA Any process that activates or increases the frequency, rate or extent of deadenylation-independent decapping of nuclear-transcribed mRNA. tmpzr1t_l9r_go_relaxed.owl activation of deadenylation-independent decapping of nuclear mRNA|up regulation of deadenylylation-independent decapping|up regulation of deadenylation-independent decapping of nuclear-transcribed mRNA|up regulation of deadenylation-independent decapping of nuclear mRNA|upregulation of deadenylation-independent decapping of nuclear-transcribed mRNA|upregulation of deadenylylation-independent decapping|activation of deadenylylation-independent decapping|activation of deadenylation-independent decapping of nuclear-transcribed mRNA|upregulation of deadenylation-independent decapping of nuclear mRNA|up-regulation of deadenylation-independent decapping of nuclear mRNA|positive regulation of deadenylylation-independent decapping|positive regulation of deadenylation-independent decapping of nuclear mRNA|up-regulation of deadenylylation-independent decapping|up-regulation of deadenylation-independent decapping of nuclear-transcribed mRNA al 2013-01-22T22:42:22Z biological_process owl:Class GO:0009674 biolink:NamedThing potassium:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Na+(out) = K+(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl high affinity potassium transporter molecular_function owl:Class GO:0036185 biolink:NamedThing 13-lipoxin reductase activity Definition: Catalysis of the reaction: 15-oxolipoxin A4 + NAD(P)H + H+ = 13,14-dihydro-15-oxolipoxin A4 + NAD(P)+. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161844 bf 2012-04-16T02:28:19Z molecular_function owl:Class GO:1903658 biolink:NamedThing positive regulation of type IV pilus biogenesis Any process that activates or increases the frequency, rate or extent of type IV pilus biogenesis. tmpzr1t_l9r_go_relaxed.owl activation of type IV fimbrial biogenesis|up regulation of type IV fimbrial assembly|up-regulation of type IV pilus biogenesis|up regulation of type IV fimbrium biogenesis|upregulation of type IV fimbria assembly|up-regulation of type IV fimbriae assembly|up-regulation of TFP biogenesis|positive regulation of type IV fimbria biogenesis|upregulation of type IV fimbrium biogenesis|positive regulation of type IV fimbriae assembly|up-regulation of type IV pilus biosynthesis|up regulation of type IV fimbrium assembly|positive regulation of type 4 pilus biogenesis|up regulation of type IV fimbria biogenesis|up-regulation of type IV fimbrium biogenesis|upregulation of type 4 pilus biogenesis|positive regulation of type IV fimbrial assembly|activation of type IV fimbria biogenesis|up-regulation of type IV fimbria assembly|up-regulation of type IV fimbrium assembly|activation of type IV fimbriae biogenesis|upregulation of type IV pilus biosynthesis|activation of TFP biogenesis|upregulation of type IV fimbrial biogenesis|activation of type IV pilus biosynthesis|activation of type IV pilus biogenesis|activation of type IV fimbrium assembly|upregulation of type IV fimbriae biogenesis|positive regulation of type IV fimbrium assembly|upregulation of type IV fimbria biogenesis|up regulation of type IV pilus biogenesis|upregulation of type IV pilus biogenesis|up regulation of type IV fimbrial biogenesis|positive regulation of type IV fimbrial biogenesis|up-regulation of type IV fimbrial biogenesis|activation of type IV fimbrial assembly|upregulation of type IV fimbriae assembly|positive regulation of type IV fimbrium biogenesis|up regulation of TFP biogenesis|up-regulation of type IV fimbrial assembly|upregulation of type IV fimbrium assembly|upregulation of type IV fimbrial assembly|positive regulation of TFP biogenesis|activation of type IV fimbriae assembly|upregulation of TFP biogenesis|activation of type IV fimbria assembly|positive regulation of type IV pilus biosynthesis|positive regulation of type IV fimbriae biogenesis|up-regulation of type IV fimbriae biogenesis|up regulation of type 4 pilus biogenesis|up regulation of type IV pilus biosynthesis|activation of type IV fimbrium biogenesis|up regulation of type IV fimbriae assembly|activation of type 4 pilus biogenesis|up regulation of type IV fimbria assembly|positive regulation of type IV fimbria assembly|up-regulation of type 4 pilus biogenesis|up regulation of type IV fimbriae biogenesis|up-regulation of type IV fimbria biogenesis jl 2014-11-25T12:03:34Z biological_process owl:Class GO:0072320 biolink:NamedThing volume-sensitive chloride channel activity Enables the transmembrane transfer of a chloride ion by a volume-sensitive channel. A volume-sensitive channel is a channel that responds to changes in the volume of a cell. tmpzr1t_l9r_go_relaxed.owl swell-activated chloride channel mah 2010-10-26T12:53:38Z molecular_function owl:Class GO:0005225 biolink:NamedThing volume-sensitive anion channel activity Enables the transmembrane transfer of an anion by a volume-sensitive channel. An anion is a negatively charged ion. A volume-sensitive channel is a channel that responds to changes in the volume of a cell. tmpzr1t_l9r_go_relaxed.owl volume-regulated channel Reactome:R-HSA-8941543 molecular_function owl:Class GO:1905374 biolink:NamedThing response to homocysteine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a homocysteine stimulus. tmpzr1t_l9r_go_relaxed.owl response to 2-amino-4-sulfanylbutanoic acid|response to Hcy|response to 2-amino-4-mercaptobutyric acid sl 2016-08-17T20:17:53Z biological_process owl:Class GO:0060948 biolink:NamedThing cardiac vascular smooth muscle cell development The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl heart vascular smooth muscle cell development dph 2009-09-29T03:00:24Z biological_process owl:Class GO:0052800 biolink:NamedThing bicyclic nitroimidazole catabolic process The chemical reactions and pathways resulting in the breakdown of a bicyclic nitroimidazole. tmpzr1t_l9r_go_relaxed.owl bicyclic nitroimidazole catabolism|bicyclic nitroimidazole degradation|bicyclic nitroimidazole breakdown biological_process owl:Class GO:1905025 biolink:NamedThing negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of membrane repolarization during ventricular cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl down-regulation of regulation of ventricular cardiac muscle repolarization|down regulation of regulation of ventricular cardiac muscle repolarization|downregulation of electrocardiogram T wave|down regulation of ventricular repolarization|negative regulation of electrocardiogram T wave|inhibition of electrocardiogram T wave|inhibition of regulation of ventricular cardiac muscle repolarization|negative regulation of ventricular repolarization|down regulation of membrane repolarization during ventricular cardiac muscle cell action potential|down-regulation of electrocardiogram T wave|down-regulation of ventricular repolarization|inhibition of membrane repolarization during ventricular cardiac muscle cell action potential|down regulation of electrocardiogram T wave|downregulation of ventricular repolarization|negative regulation of regulation of ventricular cardiac muscle repolarization|down-regulation of membrane repolarization during ventricular cardiac muscle cell action potential|downregulation of regulation of ventricular cardiac muscle repolarization|inhibition of ventricular repolarization|downregulation of membrane repolarization during ventricular cardiac muscle cell action potential rph 2016-03-04T11:19:12Z biological_process owl:Class GO:0007133 biolink:NamedThing meiotic anaphase I The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of meiosis I. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0034346 biolink:NamedThing positive regulation of type III interferon production Any process that activates or increases the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl activation of type III interferon production|stimulation of type III interferon production|upregulation of type III interferon production|up-regulation of type III interferon production|up regulation of type III interferon production|positive regulation of type III IFN production Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. biological_process owl:Class GO:0016404 biolink:NamedThing 15-hydroxyprostaglandin dehydrogenase (NAD+) activity Catalysis of the reaction: (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost-13-enoate + NAD+ = (5Z,13E)-11-alpha-hydroxy-9,15-dioxoprost-13-enoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate:NAD+ 15-oxidoreductase activity|15-hydroxyprostanoic dehydrogenase activity|15-hydroxyprostaglandin dehydrogenase activity|prostaglandin dehydrogenase activity|NAD+-dependent 15-hydroxyprostaglandin dehydrogenase (type I)|NAD-specific 15-hydroxyprostaglandin dehydrogenase activity|15-OH-PGDH|11alpha,15-dihydroxy-9-oxoprost-13-enoate:NAD+ 15-oxidoreductase activity MetaCyc:1.1.1.141-RXN|Reactome:R-HSA-9024766|Reactome:R-HSA-2161779|Reactome:R-HSA-9023968|Reactome:R-HSA-2161662|EC:1.1.1.141|RHEA:11876 molecular_function owl:Class GO:0061410 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to ethanol Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an ethanol stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T12:17:35Z biological_process owl:Class GO:0035347 biolink:NamedThing negative regulation of hypoxanthine transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of hypoxanthine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of 6-hydroxypurine transport bf 2010-03-04T10:43:53Z biological_process owl:Class GO:0035345 biolink:NamedThing regulation of hypoxanthine transport Any process that modulates the frequency, rate or extent of the directed movement of hypoxanthine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of 6-hydroxypurine transport bf 2010-03-04T10:42:04Z biological_process owl:Class GO:0034520 biolink:NamedThing 2-naphthaldehyde dehydrogenase activity Catalysis of the reaction: 2-naphthaldehyde + NAD+ + H2O = 2-naphthoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.-|UM-BBD_reactionID:r0772 molecular_function owl:Class GO:0019485 biolink:NamedThing beta-alanine catabolic process to L-alanine The chemical reactions and pathways resulting in the breakdown of beta-alanine into other compounds, including L-alanine. tmpzr1t_l9r_go_relaxed.owl beta-alanine breakdown to L-alanine|beta-alanine degradation to L-alanine biological_process owl:Class GO:0050435 biolink:NamedThing amyloid-beta metabolic process The chemical reactions and pathways involving amyloid-beta, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP). tmpzr1t_l9r_go_relaxed.owl amyloid-beta metabolism|beta-amyloid metabolism|beta-amyloid metabolic process biological_process owl:Class GO:0072058 biolink:NamedThing outer stripe development The process whose specific outcome is the progression of the outer stripe over time, from its formation to the mature structure. The outer stripe is the region of the kidney outer medulla that lies just below the cortex. The proximal straight tubules (S3) characterize this region. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:02:56Z biological_process owl:Class GO:0048852 biolink:NamedThing diencephalon morphogenesis The process in which the anatomical structures of the diencephalon are generated and organized. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072163 biolink:NamedThing mesonephric epithelium development The process whose specific outcome is the progression of an epithelium in the mesonephros over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:40:43Z biological_process owl:Class GO:0072073 biolink:NamedThing kidney epithelium development The process whose specific outcome is the progression of an epithelium in the kidney over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:37:42Z biological_process owl:Class GO:0032180 biolink:NamedThing ubiquinone biosynthetic process from tyrosine The chemical reactions and pathways resulting in the formation of ubiquinone, beginning with the conversion of tyrosine to 4-hydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902406 biolink:NamedThing mitotic actomyosin contractile ring maintenance Any actomyosin contractile ring maintenance that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle involved in mitotic cell cycle|contractile ring maintenance involved in cell cycle cytokinesis involved in mitotic cell cycle jl 2013-09-12T12:28:14Z biological_process owl:Class GO:0050676 biolink:NamedThing negative regulation of urothelial cell proliferation Any process that stops, prevents or reduces the rate or extent of urothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of urothelial cell proliferation|inhibition of urothelial cell proliferation|down-regulation of urothelial cell proliferation|down regulation of urothelial cell proliferation biological_process owl:Class GO:0050675 biolink:NamedThing regulation of urothelial cell proliferation Any process that modulates the frequency, rate or extent of urothelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034426 biolink:NamedThing etioplast membrane Either of the lipid bilayers that surround a etioplast and form the etioplast envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042870 biolink:NamedThing D-glucarate transmembrane transport The process in which D-glucarate, the D-enantiomer of glucarate, is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl D-glucarate transport biological_process owl:Class GO:1900742 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms in response to pH Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to pH. tmpzr1t_l9r_go_relaxed.owl down-regulation of filamentous growth of a population of unicellular organisms in response to pH|down regulation of filamentous growth of a population of unicellular organisms in response to pH|downregulation of filamentous growth of a population of unicellular organisms in response to pH|inhibition of filamentous growth of a population of unicellular organisms in response to pH di 2012-05-28T02:35:03Z biological_process owl:Class GO:0090584 biolink:NamedThing protein-phosphocysteine-galactitol-phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + galactitol(out) = protein cysteine + galactitol-6-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0070646 biolink:NamedThing protein modification by small protein removal A protein modification process in which one or more covalently attached groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are removed from a target protein. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-11T01:58:15Z biological_process owl:Class GO:0004996 biolink:NamedThing thyroid-stimulating hormone receptor activity Combining with thyroid-stimulating hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl thyroid stimulating hormone receptor activity|TSH receptor activity|thyrotropin receptor Wikipedia:Thyrotropin_receptor molecular_function owl:Class GO:1990254 biolink:NamedThing keratin filament binding Binding to a keratin filament, an intermediate filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. tmpzr1t_l9r_go_relaxed.owl tb 2013-12-13T22:05:25Z molecular_function owl:Class GO:0019215 biolink:NamedThing intermediate filament binding Binding to an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070441 biolink:NamedThing G-protein beta/gamma-Btk complex A protein complex formed by the association of the Bruton tyrosine protein kinase Btk, which is implicated in mammalian X-linked immunodeficiencies, with the beta and gamma subunits of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl G protein complex (BTK, GNG1, GNG2)|G protein complex (Btk, Gng2, Gnb1) See also the cellular component term 'heterotrimeric G-protein complex ; GO:0005834'. cellular_component owl:Class GO:0032849 biolink:NamedThing positive regulation of cellular pH reduction Any process that activates or increases the frequency, rate, or extent of a process that reduces the internal pH of a cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell pH reduction|positive regulation of cellular acidification|positive regulation of intracellular pH reduction|activation of cellular pH reduction|positive regulation of reduction of cellular pH|upregulation of cellular pH reduction|positive regulation of reduction of pH in cell|stimulation of cellular pH reduction|positive regulation of intracellular acidification|up regulation of cellular pH reduction|up-regulation of cellular pH reduction biological_process owl:Class GO:0052028 biolink:NamedThing induction by symbiont of host signal transduction pathway Any process in which an organism activates, maintains or increases the frequency, rate or extent of the host signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl stimulation by symbiont of host signal transduction pathway|positive regulation by symbiont of host signal transduction pathway|positive regulation of signal transduction in other organism|activation by symbiont of host signal transduction pathway|upregulation by symbiont of host signal transduction pathway|up regulation by symbiont of host signal transduction pathway|positive regulation by organism of signal transduction in other organism involved in symbiotic interaction|up-regulation by symbiont of host signal transduction pathway GO:0052526|GO:0044502 biological_process owl:Class GO:0015790 biolink:NamedThing UDP-xylose transmembrane transport The directed movement of UDP-xylose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-xylose is a substance composed of xylose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-xylose transport biological_process owl:Class GO:0032326 biolink:NamedThing Mo-molybdopterin cofactor catabolic process The chemical reactions and pathways resulting in the breakdown of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Moco catabolism|Mo-molybdopterin cofactor catabolism|Mo-molybdopterin cofactor degradation|Mo-molybdopterin cofactor breakdown|Moco catabolic process biological_process owl:Class GO:0050307 biolink:NamedThing sucrose-phosphate phosphatase activity Catalysis of the reaction: sucrose 6F-phosphate + H2O = sucrose + phosphate. tmpzr1t_l9r_go_relaxed.owl sucrose-phosphate phosphohydrolase activity|sucrose-6F-phosphate phosphohydrolase activity EC:3.1.3.24|MetaCyc:SUCROSE-PHOSPHATASE-RXN|KEGG_REACTION:R06211|KEGG_REACTION:R00805|RHEA:19289 molecular_function owl:Class GO:0080022 biolink:NamedThing primary root development The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000439 biolink:NamedThing positive regulation of monocyte extravasation Any process that activates or increases the frequency, rate or extent of monocyte extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:25:11Z biological_process owl:Class GO:0060399 biolink:NamedThing positive regulation of growth hormone receptor signaling pathway Any process that increases the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl positive regulation of growth hormone receptor signalling pathway biological_process owl:Class GO:0060989 biolink:NamedThing lipid tube assembly involved in organelle fusion The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in membrane shaping of vesicle membranes as organelles fuse. tmpzr1t_l9r_go_relaxed.owl lipid tubulation involved in organelle fusion dph 2010-01-11T02:06:50Z biological_process owl:Class GO:1902940 biolink:NamedThing positive regulation of intracellular calcium activated chloride channel activity Any process that activates or increases the frequency, rate or extent of intracellular calcium activated chloride channel activity. tmpzr1t_l9r_go_relaxed.owl upregulation of intracellular calcium activated chloride channel activity|up-regulation of intracellular calcium activated chloride channel activity|activation of intracellular calcium activated chloride channel activity|up regulation of intracellular calcium activated chloride channel activity als 2014-04-28T08:49:20Z biological_process owl:Class GO:0019568 biolink:NamedThing arabinose catabolic process The chemical reactions and pathways resulting in the breakdown of arabinose, arabino-pentose. tmpzr1t_l9r_go_relaxed.owl arabinose catabolism|arabinose degradation|arabinose breakdown biological_process owl:Class GO:0060075 biolink:NamedThing regulation of resting membrane potential Any process that modulates the establishment or extent of a resting potential, the electrical charge across the plasma membrane, with the interior of the cell negative with respect to the exterior. The resting potential is the membrane potential of a cell that is not stimulated to be depolarized or hyperpolarized. tmpzr1t_l9r_go_relaxed.owl regulation of resting potential biological_process owl:Class GO:0044715 biolink:NamedThing 8-oxo-dGDP phosphatase activity Catalysis of the reaction 8-oxo-dGDP + H2O = 8-oxo-dGMP + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:32063|Reactome:R-HSA-2395879|Reactome:R-HSA-2395873|EC:3.6.1.58 jl 2012-10-18T13:31:09Z molecular_function owl:Class GO:0120092 biolink:NamedThing crotonyl-CoA hydratase activity Catalysis of the reaction: Acetyl-CoA + [protein]-L-lysine = CoA + [protein]-N(6)-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RHEA:45584 krc 2017-08-22T20:13:55Z molecular_function owl:Class GO:0010041 biolink:NamedThing response to iron(III) ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(III) ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to iron(III) biological_process owl:Class GO:0039633 biolink:NamedThing killing by virus of host cell Any process mediated by a virus that results in the death of a cell in the host organism. tmpzr1t_l9r_go_relaxed.owl killing by virus of host cells|killing by phage of host cells bf 2012-08-10T14:44:40Z biological_process owl:Class GO:0010612 biolink:NamedThing regulation of cardiac muscle adaptation Any process that modulates the rate, extent or frequency of the process in which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007407 biolink:NamedThing neuroblast activation A change in the morphology or behavior of a neuroblast resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl GO:0043351|GO:0043352 biological_process owl:Class GO:0070886 biolink:NamedThing positive regulation of calcineurin-NFAT signaling cascade Any process that activates or increases the frequency, rate or extent of signaling via the calcineurin-NFAT signaling cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of NFAT protein import into nucleus|activation of calcineurin-NFAT signaling cascade|up-regulation of calcineurin-NFAT signaling cascade|upregulation of calcineurin-NFAT signaling cascade|positive regulation of calcineurin-NFAT signaling pathway|stimulation of calcineurin-NFAT signaling cascade|up regulation of calcineurin-NFAT signaling cascade|positive regulation of calcineurin-NFAT signalling cascade mah 2009-08-26T03:37:10Z GO:0051533 biological_process owl:Class GO:0002564 biolink:NamedThing alternate splicing of immunoglobulin genes The generation of alternate transcripts of immunoglobulin genes through alternate splicing of exons. tmpzr1t_l9r_go_relaxed.owl alternate splicing of antibody genes biological_process owl:Class GO:0019135 biolink:NamedThing deoxyhypusine monooxygenase activity Catalysis of the reaction: protein N6-(4-aminobutyl)-L-lysine + donor-H2 + O2 = protein N6-((R)-4-amino-2-hydroxybutyl)-L-lysine + acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl deoxyhypusine dioxygenase activity|DOHH activity|deoxyhypusine,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating)|deoxyhypusine hydroxylase activity RHEA:14101|Reactome:R-HSA-204662|MetaCyc:DEOXYHYPUSINE-MONOOXYGENASE-RXN|EC:1.14.99.29 molecular_function owl:Class GO:0043546 biolink:NamedThing molybdopterin cofactor binding Binding to a molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Moco binding molecular_function owl:Class GO:0048920 biolink:NamedThing posterior lateral line neuromast primordium migration The migration of a relatively undifferentiated cell along the developing posterior lateral line, originating from cranial ectodermal placodes situated behind the ear. The neuromast primordium deposits proneuromasts along the lateral line, from which the neuromasts will develop. tmpzr1t_l9r_go_relaxed.owl PLL neuromast primordium migration biological_process owl:Class GO:0048883 biolink:NamedThing neuromast primordium migration The migration of a cluster of a relatively undifferentiated cell originating at specific cephalic placodes and depositing proneuromasts along a developing lateral line, from which the neuromasts will develop. tmpzr1t_l9r_go_relaxed.owl lateral line primordium migration biological_process owl:Class GO:0071495 biolink:NamedThing cellular response to endogenous stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. mah 2009-12-18T02:25:40Z biological_process owl:Class GO:0023027 biolink:NamedThing MHC class I protein binding, via antigen binding groove Binding to a major histocompatibility complex class I molecules via the antigen binding groove. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0018643 biolink:NamedThing carbon disulfide oxygenase activity Catalysis of the reaction: carbon disulfide + NADH + H+ + O2 = [S] + H2O + NAD+ + carbonyl sulfide. tmpzr1t_l9r_go_relaxed.owl carbon disulphide oxygenase activity UM-BBD_reactionID:r0599|EC:1.14.13.- molecular_function owl:Class GO:0043950 biolink:NamedThing positive regulation of cAMP-mediated signaling Any process which activates, maintains or increases the frequency, rate or extent of cAMP-mediated signaling, a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl positive regulation of cAMP-mediated signalling biological_process owl:Class GO:0018891 biolink:NamedThing cyclohexanol metabolic process The chemical reactions and pathways involving cyclohexanol, the monohydroxy derivative of cyclohexane. It is used as a solvent and blending agent. tmpzr1t_l9r_go_relaxed.owl cyclohexanol metabolism UM-BBD_pathwayID:chx biological_process owl:Class GO:0043151 biolink:NamedThing DNA synthesis involved in double-strand break repair via single-strand annealing The synthesis of DNA that contributes to the process of double-strand break repair via single-strand annealing. tmpzr1t_l9r_go_relaxed.owl DNA synthesis during double-strand break repair via single-strand annealing biological_process owl:Class GO:0047348 biolink:NamedThing glycerol-3-phosphate cytidylyltransferase activity Catalysis of the reaction: sn-glycerol 3-phosphate + CTP = CDP-glycerol + diphosphate. tmpzr1t_l9r_go_relaxed.owl CTP:glycerol-3-phosphate cytidylyltransferase activity|CTP:sn-glycerol-3-phosphate cytidylyltransferase activity|cytidine diphosphoglycerol pyrophosphorylase activity|CDP-glycerol diphosphorylase activity|cytidine diphosphate glycerol pyrophosphorylase activity|CDP-glycerol pyrophosphorylase activity|Gro-PCT|CTP:glycerol 3-phosphate cytidylyltransferase activity KEGG_REACTION:R00856|MetaCyc:2.7.7.39-RXN|RHEA:13361|EC:2.7.7.39 molecular_function owl:Class GO:0018868 biolink:NamedThing 2-aminobenzenesulfonate metabolic process The chemical reactions and pathways involving 2-aminobenzenesulfonate, aniline-o-sulfonic acid, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzenesulphonate metabolic process|2-aminobenzenesulfonate metabolism|2-aminobenzenesulphonate metabolism UM-BBD_pathwayID:abs biological_process owl:Class GO:1902109 biolink:NamedThing negative regulation of mitochondrial membrane permeability involved in apoptotic process Any negative regulation of mitochondrial membrane permeability that is involved in apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial membrane permeability involved in apoptotic program|negative regulation of mitochondrial membrane permeability involved in programmed cell death by apoptosis|negative regulation of transport across mitochondrial membrane involved in apoptotic program|mitochondrial membrane impermeabilization involved in apoptotic program|negative regulation of transport across mitochondrial membrane involved in apoptotic process|negative regulation of mitochondrial membrane permeability involved in apoptotic programmed cell death|mitochondrial membrane impermeabilization involved in type I programmed cell death|mitochondrial membrane impermeability involved in signaling (initiator) caspase activity|mitochondrial membrane impermeability involved in apoptotic program|mitochondrial membrane impermeability involved in apoptosis|negative regulation of mitochondrial membrane permeability involved in type I programmed cell death|negative regulation of transport across mitochondrial membrane involved in apoptotic cell death|mitochondrial membrane impermeability involved in apoptotic programmed cell death|negative regulation of transport across mitochondrial membrane involved in apoptosis|negative regulation of transport across mitochondrial membrane involved in signaling (initiator) caspase activity|mitochondrial membrane impermeabilization involved in apoptosis|mitochondrial membrane impermeability involved in apoptotic process|negative regulation of mitochondrial membrane permeability involved in apoptosis|mitochondrial membrane impermeabilization involved in apoptotic process|mitochondrial membrane impermeability involved in programmed cell death by apoptosis|mitochondrial membrane impermeabilization involved in apoptotic cell death|mitochondrial membrane impermeabilization involved in signaling (initiator) caspase activity|mitochondrial membrane impermeability involved in type I programmed cell death|mitochondrial membrane impermeabilization involved in programmed cell death by apoptosis|mitochondrial membrane impermeabilization involved in apoptotic programmed cell death|negative regulation of mitochondrial membrane permeability involved in apoptotic cell death|mitochondrial membrane impermeability involved in apoptotic cell death|negative regulation of transport across mitochondrial membrane involved in programmed cell death by apoptosis|negative regulation of mitochondrial membrane permeability involved in signaling (initiator) caspase activity|negative regulation of transport across mitochondrial membrane involved in type I programmed cell death|negative regulation of transport across mitochondrial membrane involved in apoptotic programmed cell death pr 2013-05-03T12:11:53Z biological_process owl:Class GO:0051041 biolink:NamedThing positive regulation of calcium-independent cell-cell adhesion Any process that activates or increases the frequency, rate or extent of calcium-independent cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl activation of calcium-independent cell-cell adhesion|upregulation of calcium-independent cell-cell adhesion|stimulation of calcium-independent cell-cell adhesion|up-regulation of calcium-independent cell-cell adhesion|up regulation of calcium-independent cell-cell adhesion biological_process owl:Class GO:0021765 biolink:NamedThing cingulate gyrus development The progression of the cingulate gyrus over time from its initial formation until its mature state. The cingulate gyrus is a ridge in the cerebral cortex located dorsal to the corpus callosum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033928 biolink:NamedThing mannan 1,4-mannobiosidase activity Catalysis of the hydrolysis of (1->4)-beta-D-mannosidic linkages in (1->4)-beta-D-mannans, to remove successive mannobiose residues from the non-reducing chain ends. tmpzr1t_l9r_go_relaxed.owl 1,4-beta-D-mannan mannobiohydrolase activity|exo-1,4-beta-mannobiohydrolase activity|mannan 1,4-beta-mannobiosidase activity|exo-beta-mannanase activity EC:3.2.1.100|MetaCyc:3.2.1.100-RXN molecular_function owl:Class GO:0090488 biolink:NamedThing polo box domain specific binding Binding to a polo box domain of a protein. The polo box domain is involved in binding substrates of polo kinases. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-16T10:47:30Z molecular_function owl:Class GO:0062183 biolink:NamedThing all-trans retinoic acid 18-hydroxylase activity Catalysis of the reaction: all-trans-retinoate + O2 + reduced [NADPH--hemoprotein reductase] = all-trans-18-hydroxyretinoate + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:55856 dph 2019-11-26T18:41:32Z molecular_function owl:Class GO:0060451 biolink:NamedThing negative regulation of hindgut contraction Any process that decreases the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033204 biolink:NamedThing ribonuclease P RNA binding Binding to RNA subunit of ribonuclease P. tmpzr1t_l9r_go_relaxed.owl RNase P RNA binding molecular_function owl:Class GO:0070399 biolink:NamedThing wall teichoic acid catabolic process The chemical reactions and pathways resulting in the breakdown of wall teichoic acid, which is a major component of the cell wall of Gram-positive bacteria and typically consists of a polymer of glycerol-phosphate or ribitol-phosphate to which are attached glycosyl and D-alanyl ester residues and which is covalently linked to peptidoglycan. tmpzr1t_l9r_go_relaxed.owl wall teichoic acid catabolism|wall teichoic acid breakdown|wall teichoic acid degradation biological_process owl:Class GO:0070397 biolink:NamedThing wall teichoic acid metabolic process The chemical reactions and pathways involving wall teichoic acid, which is a major component of the cell wall of Gram-positive bacteria and typically consists of a polymer of glycerol-phosphate or ribitol-phosphate to which are attached glycosyl and D-alanyl ester residues and which is covalently linked to peptidoglycan. tmpzr1t_l9r_go_relaxed.owl WTA metabolic process|wall teichoic acid metabolism biological_process owl:Class GO:0051119 biolink:NamedThing sugar transmembrane transporter activity Enables the transfer of a sugar from one side of a membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. tmpzr1t_l9r_go_relaxed.owl sugar/polyol channel activity Reactome:R-HSA-8876319|Reactome:R-HSA-8875902|Reactome:R-HSA-428779 molecular_function owl:Class GO:1901272 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconic acid metabolic process The chemical reactions and pathways involving 2-dehydro-3-deoxy-D-gluconic acid. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-D-gluconic acid metabolism yaf 2012-08-17T14:46:15Z biological_process owl:Class GO:0008777 biolink:NamedThing acetylornithine deacetylase activity Catalysis of the reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine. tmpzr1t_l9r_go_relaxed.owl acetylornithinase activity|N2-acetyl-L-ornithine amidohydrolase activity|N-acetylornithinase activity|2-N-acetyl-L-ornithine amidohydrolase activity EC:3.5.1.16|MetaCyc:ACETYLORNDEACET-RXN|RHEA:15941 molecular_function owl:Class GO:1902498 biolink:NamedThing regulation of protein autoubiquitination Any process that modulates the frequency, rate or extent of protein autoubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of protein auto-ubiquitination|regulation of protein auto-ubiquitinylation|regulation of protein self-ubiquitinylation|regulation of protein self-ubiquitination|regulation of protein autoubiquitinylation rb 2013-11-13T21:03:28Z biological_process owl:Class GO:0055050 biolink:NamedThing astral spindle assembly involved in male meiosis The aggregation, arrangement and bonding together of a set of components to form the astral spindle in male meiotic cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055049 biolink:NamedThing astral spindle assembly The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the presence of centrosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901823 biolink:NamedThing delta-carotene catabolic process The chemical reactions and pathways resulting in the breakdown of delta-carotene. tmpzr1t_l9r_go_relaxed.owl delta-carotene catabolism|delta-carotene degradation|delta-carotene breakdown yaf 2013-01-22T11:17:34Z biological_process owl:Class GO:1904973 biolink:NamedThing positive regulation of viral translation Any process that activates or increases the frequency, rate or extent of viral translation. tmpzr1t_l9r_go_relaxed.owl up regulation of viral protein anabolism|up regulation of viral protein synthesis|activation of viral protein synthesis|up-regulation of viral protein synthesis|upregulation of viral protein anabolism|up-regulation of viral protein biosynthesis|positive regulation of viral protein biosynthesis|activation of viral protein formation|upregulation of viral protein biosynthesis|positive regulation of viral protein formation|positive regulation of viral protein synthesis|positive regulation of viral protein anabolism|activation of viral translation|activation of viral protein biosynthetic process|up regulation of viral protein biosynthesis|up regulation of viral protein formation|upregulation of viral protein synthesis|activation of viral protein biosynthesis|upregulation of viral protein formation|activation of viral protein anabolism|up regulation of viral translation|positive regulation of viral protein biosynthetic process|up regulation of viral protein biosynthetic process|up-regulation of viral protein formation|up-regulation of viral protein anabolism|up-regulation of viral translation|up-regulation of viral protein biosynthetic process|upregulation of viral translation|upregulation of viral protein biosynthetic process bhm 2016-02-17T15:53:15Z biological_process owl:Class GO:0030768 biolink:NamedThing 16-methoxy-2,3-dihydro-3-hydroxytabersonine N-methyltransferase activity Catalysis of the reaction: (3R)-3-hydroxy-16-methoxy-2,3-dihydrotabersonine + S-adenosyl-L-methionine = S-adenosyl-L-homocysteine + deacetoxyvindoline + H(+). tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-16-methoxy-2,3-dihydrotabersonine N-methyltransferase activity|NMT activity|S-adenosyl-L-methionine:16-methoxy-2,3-dihydro-3-hydroxytabersonine N-methyltransferase activity|16-methoxy-2,3-dihydro-3-hydroxytabersonine methyltransferase activity|S-adenosyl-L-methionine:3-hydroxy-16-methoxy-2,3-dihydrotabersonine N-methyltransferase activity EC:2.1.1.99|RHEA:11336|KEGG_REACTION:R04013|MetaCyc:2.1.1.99-RXN molecular_function owl:Class GO:1903553 biolink:NamedThing positive regulation of extracellular exosome assembly Any process that activates or increases the frequency, rate or extent of extracellular vesicular exosome assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of extracellular vesicular exosome assembly|up-regulation of extracellular vesicular exosome assembly|upregulation of extracellular vesicular exosome assembly|positive regulation of extracellular vesicular exosome assembly|activation of extracellular vesicular exosome assembly pga 2014-10-20T15:37:42Z biological_process owl:Class GO:0033386 biolink:NamedThing geranylgeranyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of geranylgeranyl diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl diphosphate biosynthesis|geranylgeranyl diphosphate anabolism|geranylgeranyl diphosphate formation|geranylgeranyl diphosphate synthesis MetaCyc:PWY-5120|MetaCyc:PWY-5121 biological_process owl:Class GO:0031556 biolink:NamedThing transcriptional attenuation by ribosome A type of transcriptional regulation at the level of early termination. This process can occur only in prokaryotes, where transcription of an operon into messenger RNA and translation of that mRNA into polypeptides occur simultaneously. The general principle is that alternative mRNA secondary structures occur under different physiological conditions such as available amount of a particular amino acid. One set of conditions favors early termination of transcription. In the classic example of the trp biosynthesis operon, translation of the gene for a short, trp-containing polypeptide called the trp operon leader peptide pauses either at a trp codon (if tryptophan is scarce) or the stop codon (if trp is readily available). In the former situation transcription continues, but in the latter a Rho-independent terminator forms and reduces, or attenuates, expression of the tryptophan biosynthesis genes. Although the polypeptides encoded by leader peptide genes appear not to be stable once their translation is complete, it is suggested by recent studies that their nascent polypeptide chains interact specifically with ribosomes, specific uncharged tRNAs, or other cellular components to inhibit release at the stop codon and improve the function of transcriptional attenuation as a regulatory switch. tmpzr1t_l9r_go_relaxed.owl ribosome-mediated transcriptional attenuation biological_process owl:Class GO:0120019 biolink:NamedThing phosphatidylcholine transfer activity Removes phosphatidylcholine from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl intermembrane phosphatidylcholine transfer activity|phosphatidylcholine carrier activity https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T04:22:47Z molecular_function owl:Class GO:0008525 biolink:NamedThing phosphatidylcholine transporter activity Enables the directed movement of phosphatidylcholine into, out of or within a cell, or between cells. Phosphatidylcholine refers to a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine transmembrane transporter activity molecular_function owl:Class GO:0050409 biolink:NamedThing indolylacetylinositol arabinosyltransferase activity Catalysis of the reaction: 1L-1-O-(indol-3-yl)acetyl-myo-inositol + UDP-L-arabinose = (indol-3-yl)acetyl-myo-inositol 3-L-arabinoside + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-L-arabinose:indol-3-ylacetyl-myo-inositol L-arabinosyltransferase activity|UDP-L-arabinose:(indol-3-yl)acetyl-myo-inositol L-arabinosyltransferase activity|arabinosylindolylacetylinositol synthase activity EC:2.4.2.34|RHEA:19505|KEGG_REACTION:R04335|MetaCyc:2.4.2.34-RXN molecular_function owl:Class GO:0070135 biolink:NamedThing beta-1,2-oligomannoside metabolic process The chemical reactions and pathways involving beta-1,2-linked oligomannosides, which are found in fungal cell wall phosphopeptidomannan and phospholipomannan. tmpzr1t_l9r_go_relaxed.owl beta-1,2-oligomannoside metabolism biological_process owl:Class GO:0000430 biolink:NamedThing regulation of transcription from RNA polymerase II promoter by glucose Any process involving glucose that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015431 biolink:NamedThing ABC-type glutathione S-conjugate transporter activity Catalysis of the reaction: ATP + H2O + glutathione S-conjugate(in) -> ADP + phosphate + glutathione S-conjugate(out). tmpzr1t_l9r_go_relaxed.owl GS-X pump|ATP-dependent glutathione S-conjugate export pump|MRP1/GS-X pump|glutathione S-conjugate-transporting ATPase activity|ATPase-coupled glutathione S-conjugate transmembrane transporter activity|glutathione S-conjugate-exporting ATPase activity|conjugate transporter activity RHEA:19121|EC:7.6.2.3 mah 2010-10-25T02:32:02Z GO:0071997 molecular_function owl:Class GO:0007209 biolink:NamedThing phospholipase C-activating tachykinin receptor signaling pathway The series of molecular signals generated as a consequence of a tachykinin receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by tachykinin receptor signaling pathway|activation of phospholipase C activity by tachykinin receptor signalling pathway|tachykinin receptor, phospholipase C activating pathway biological_process owl:Class GO:0090175 biolink:NamedThing regulation of establishment of planar polarity Any process that modulates the rate, frequency or extent of the establishment of planar polarity, the coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-14T10:29:41Z biological_process owl:Class GO:0032137 biolink:NamedThing guanine/thymine mispair binding Binding to a double-stranded DNA region containing a G/T mispair. tmpzr1t_l9r_go_relaxed.owl G/T mispair binding|T/G mispair binding|thymine/guanine mispair binding molecular_function owl:Class GO:1901322 biolink:NamedThing response to chloramphenicol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chloramphenicol stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-30T00:01:07Z biological_process owl:Class GO:1900464 biolink:NamedThing negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter Any process that stops, prevents, or reduces the frequency, rate or extent of cellular hyperosmotic salinity response by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular response to hyperosmotic salt stress by negative regulation of transcription from RNA polymerase II promoter dgf 2012-05-01T07:29:19Z biological_process owl:Class GO:0070975 biolink:NamedThing FHA domain binding Binding to a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich. tmpzr1t_l9r_go_relaxed.owl Forkhead-associated domain binding mah 2009-10-02T01:09:20Z molecular_function owl:Class GO:2000921 biolink:NamedThing regulation of arabinoxylan-containing compound catabolic process Any process that modulates the frequency, rate or extent of arabinoxylan-containing compound catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of arabinoxylan catabolism tt 2011-08-01T12:38:56Z biological_process owl:Class GO:0015872 biolink:NamedThing dopamine transport The directed movement of dopamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099643 biolink:NamedThing signal release from synapse Any signal release from a synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019158 biolink:NamedThing mannokinase activity Catalysis of the reaction: ATP + D-mannose = ADP + D-mannose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose (D-mannose) kinase activity|mannokinase (phosphorylating)|ATP:D-mannose 6-phosphotransferase activity EC:2.7.1.7|RHEA:11028|MetaCyc:MANNKIN-RXN molecular_function owl:Class GO:0004791 biolink:NamedThing thioredoxin-disulfide reductase activity Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. tmpzr1t_l9r_go_relaxed.owl NADP--thioredoxin reductase activity|NADPH--thioredoxin reductase activity|thioredoxin-disulphide reductase activity|thioredoxin reductase (NADPH) activity|thioredoxin disulfide reductase activity|thioredoxin:NADP+ oxidoreductase activity|NADPH:oxidized thioredoxin oxidoreductase activity|NADPH2:oxidized thioredoxin oxidoreductase activity MetaCyc:THIOREDOXIN-REDUCT-NADPH-RXN|Reactome:R-HSA-9617735|Reactome:R-HSA-3323050|EC:1.8.1.9|Reactome:R-HSA-1222485|RHEA:20345|Reactome:R-HSA-73646|KEGG_REACTION:R02016 molecular_function owl:Class GO:0034108 biolink:NamedThing positive regulation of erythrocyte clearance Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance. tmpzr1t_l9r_go_relaxed.owl positive regulation of red blood cell clearance|positive regulation of RBC clearance|positive regulation of neocytolysis biological_process owl:Class GO:0042136 biolink:NamedThing neurotransmitter biosynthetic process The chemical reactions and pathways resulting in the formation of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. tmpzr1t_l9r_go_relaxed.owl neurotransmitter formation|neurotransmitter anabolism|neurotransmitter biosynthesis and storage|neurotransmitter biosynthetic process and storage|neurotransmitter biosynthesis|neurotransmitter synthesis biological_process owl:Class GO:0099102 biolink:NamedThing G-protein gated potassium channel activity involved in regulation of postsynaptic membrane potential Any G-protein gated potassium channel activity that is involved regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045015 biolink:NamedThing HDEL sequence binding Binding to a HDEL sequence, the C terminus tetrapeptide sequence His-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl HDEL receptor activity molecular_function owl:Class GO:0045992 biolink:NamedThing negative regulation of embryonic development Any process that stops, prevents, or reduces the frequency, rate or extent of embryonic development. tmpzr1t_l9r_go_relaxed.owl down-regulation of embryonic development|downregulation of embryonic development|inhibition of embryonic development|down regulation of embryonic development biological_process owl:Class GO:0016488 biolink:NamedThing farnesol catabolic process The chemical reactions and pathways resulting in the breakdown of the sesquiterpenoid alcohol farnesol, 3,7,11-trimethyl-2,6,10,dodecatrien-1-ol. tmpzr1t_l9r_go_relaxed.owl farnesol catabolism|farnesol breakdown|farnesol degradation biological_process owl:Class GO:0016487 biolink:NamedThing farnesol metabolic process The chemical reactions and pathways involving the sesquiterpenoid alcohol farnesol, 3,7,11-trimethyl-2,6,10,dodecatrien-1-ol. tmpzr1t_l9r_go_relaxed.owl farnesol metabolism biological_process owl:Class GO:0021658 biolink:NamedThing rhombomere 3 morphogenesis The process in which the anatomical structure of rhombomere 3 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903845 biolink:NamedThing negative regulation of cellular response to transforming growth factor beta stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to transforming growth factor beta stimulus. tmpzr1t_l9r_go_relaxed.owl inhibition of cellular response to TGFbeta stimulus|downregulation of cellular response to transforming growth factor beta stimulus|down-regulation of cellular response to TGFbeta stimulus|inhibition of cellular response to TGF-beta stimulus|negative regulation of cellular response to TGFbeta stimulus|downregulation of cellular response to TGFbeta stimulus|down-regulation of cellular response to TGF-beta stimulus|negative regulation of cellular response to TGF-beta stimulus|down regulation of cellular response to TGF-beta stimulus|down-regulation of cellular response to transforming growth factor beta stimulus|down regulation of cellular response to transforming growth factor beta stimulus|inhibition of cellular response to transforming growth factor beta stimulus|downregulation of cellular response to TGF-beta stimulus|down regulation of cellular response to TGFbeta stimulus rph 2015-01-23T11:25:21Z biological_process owl:Class GO:0047105 biolink:NamedThing 4-trimethylammoniobutyraldehyde dehydrogenase activity Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate. tmpzr1t_l9r_go_relaxed.owl 4-trimethylammoniobutanal:NAD+ 1-oxidoreductase activity|4-N-trimethylaminobutyraldehyde dehydrogenase activity|4-trimethylaminobutyraldehyde dehydrogenase activity MetaCyc:1.2.1.47-RXN|EC:1.2.1.47|RHEA:17985 molecular_function owl:Class GO:0061570 biolink:NamedThing dCDP phosphorylation The process of introducing a phosphate group into dCDP to produce a dCTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T13:02:16Z biological_process owl:Class GO:1902273 biolink:NamedThing negative regulation of (R)-carnitine transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of (R)-carnitine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of (R)-carnitine transmembrane transport|down regulation of (R)-carnitine transmembrane transport|downregulation of (R)-carnitine transmembrane transport|inhibition of (R)-carnitine transmembrane transport mcc 2013-07-01T13:13:17Z biological_process owl:Class GO:0036397 biolink:NamedThing formate dehydrogenase (quinone) activity Catalysis of the reaction: formate + a quinone = CO2 + a quinol. tmpzr1t_l9r_go_relaxed.owl formate:quinone oxidoreductase activity|formate dehydrogenase-N activity|Fdh-N activity https://github.com/geneontology/go-ontology/issues/21412 EC:1.17.5.3|MetaCyc:FORMATEDEHYDROG-RXN|RHEA:48592|KEGG_REACTION:R09494 Formerly EC:1.1.5.6. bf 2013-07-18T13:11:41Z molecular_function owl:Class GO:0061369 biolink:NamedThing negative regulation of testicular blood vessel morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of blood vessel morphogenesis in the testicle. tmpzr1t_l9r_go_relaxed.owl negative regulation of testicular vasculature morphogenesis dph 2010-10-27T02:47:14Z biological_process owl:Class GO:0043795 biolink:NamedThing glyceraldehyde oxidoreductase activity Catalysis of the reaction: A + D-glyceraldehyde + H2O = (R)-glycerate + AH2 + H(+). tmpzr1t_l9r_go_relaxed.owl RHEA:36047|EC:1.2.99.8 molecular_function owl:Class GO:0008726 biolink:NamedThing alkanesulfonate monooxygenase activity Catalysis of the reaction: an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN. tmpzr1t_l9r_go_relaxed.owl SsuD|alkanesulphonate monooxygenase activity|alkanesulfonate, reduced-FMN:oxygen oxidoreductase activity|FMNH2-dependent aliphatic sulfonate monooxygenase activity|FMNH(2)-dependent aliphatic sulfonate monooxygenase activity|sulfate starvation-induced protein 6 activity|FMNH(2)-dependent alkanesulfonate monooxygenase activity MetaCyc:RXN0-280|EC:1.14.14.5|RHEA:23064 molecular_function owl:Class GO:0032738 biolink:NamedThing positive regulation of interleukin-15 production Any process that activates or increases the frequency, rate, or extent of interleukin-15 production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-15 production|up-regulation of interleukin-15 production|positive regulation of interleukin-15 biosynthetic process|positive regulation of IL-15 production|activation of interleukin-15 production|up regulation of interleukin-15 production|upregulation of interleukin-15 production GO:0045374 biological_process owl:Class GO:0021799 biolink:NamedThing cerebral cortex radially oriented cell migration The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021795 biolink:NamedThing cerebral cortex cell migration The orderly movement of cells from one site to another in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070597 biolink:NamedThing cell wall (1->3)-alpha-glucan metabolic process The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl cell wall 1,3-alpha-glucan metabolism|cell wall alpha-1,3 glucan metabolic process|cell wall alpha-1,3 glucan metabolism|cell wall 1,3-alpha-glucan metabolic process mah 2009-04-28T04:03:00Z biological_process owl:Class GO:1904334 biolink:NamedThing heme import across plasma membrane The directed movement of heme from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl heme assimilation al 2015-06-11T16:56:21Z biological_process owl:Class GO:0045016 biolink:NamedThing mitochondrial magnesium ion transmembrane transport The process in which a magnesium ion (Mg2+) is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial magnesium ion transport mcc 2015-01-21T17:44:38Z GO:1990614 biological_process owl:Class GO:0019289 biolink:NamedThing rhizobactin 1021 biosynthetic process The chemical reactions and pathways resulting in the formation of rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti. tmpzr1t_l9r_go_relaxed.owl rhizobactin 1021 biosynthetic process, peptide modification|rhizobactin 1021 formation|rhizobactin 1021 biosynthesis|rhizobactin 1021 biosynthetic process, peptide formation|rhizobactin 1021 synthesis|rhizobactin 1021 anabolism MetaCyc:PWY-761 GO:0031194|GO:0031193 biological_process owl:Class GO:0140616 biolink:NamedThing iodotyrosine deiodinase activity Catalyzes the reaction: 2 iodide + L-tyrosine + 2 NADP+ = 3,5-diiodo-L-tyrosine + H+ + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl monoiodotyrosine deiodinase activity|tyrosine iodinase activity|iodide peroxidase-tyrosine iodinase activity|iodotyrosine deiodase activity https://github.com/geneontology/go-ontology/issues/21027 EC:1.21.1.1|RHEA:32479 pg 2021-03-08T15:36:42Z molecular_function owl:Class GO:0006072 biolink:NamedThing glycerol-3-phosphate metabolic process The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate metabolism biological_process owl:Class GO:0015130 biolink:NamedThing mevalonate transmembrane transporter activity Enables the transfer of mevalonate from one side of a membrane to the other. Mevalonate is the anion of mevalonic acid; its (R)-enantiomer is a strategic intermediate derived from hydroxymethylglutaryl-CoA in the biosynthesis of polyprenyl compounds. tmpzr1t_l9r_go_relaxed.owl monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity molecular_function owl:Class GO:0005963 biolink:NamedThing magnesium-dependent protein serine/threonine phosphatase complex An enzyme complex that catalyzes the removal of serine- or threonine-bound phosphate groups from a wide range of phosphoproteins, including a number of enzymes that have been phosphorylated under the action of a kinase. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001872 biolink:NamedThing (1->3)-beta-D-glucan binding Binding to a (1->3)-beta-D-glucan. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-glucan binding|zymosan binding|callose binding GO:0080087 molecular_function owl:Class GO:0018885 biolink:NamedThing carbon tetrachloride metabolic process The chemical reactions and pathways involving carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations. It is also used as grain fumigant and a chemical intermediate in the production of refrigerants. tmpzr1t_l9r_go_relaxed.owl carbon tetrachloride metabolism UM-BBD_pathwayID:ctc biological_process owl:Class GO:0045643 biolink:NamedThing regulation of eosinophil differentiation Any process that modulates the frequency, rate or extent of eosinophil differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097619 biolink:NamedThing PTEX complex A protein complex that acts as a protein trafficking machinery and is responsible for the export of proteins across the parasitophorous (symbiont-containing) vacuolar membrane and into the human host cell. The PTEX complex is located in the vacuole membrane. It is ATP-powered, and comprises heat shock protein 101 (HSP101; a ClpA/B-like ATPase from the AAA+ superfamily, of a type commonly associated with protein translocons), a parasite protein termed PTEX150, and exported protein 2 (EXP2). EXP2 is the potential channel, as it is the membrane-associated component of the core PTEX complex. Two other proteins, PTEX88 and thioredoxin 2 (TRX2), were also identified as PTEX components. tmpzr1t_l9r_go_relaxed.owl Plasmodium translocon of exported proteins pr 2014-07-29T16:05:32Z cellular_component owl:Class GO:0032256 biolink:NamedThing establishment of dense core granule localization The directed movement of a dense core granule to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of dense core granule localisation|establishment of dense core vesicle localization biological_process owl:Class GO:1902998 biolink:NamedThing positive regulation of neurofibrillary tangle assembly Any process that activates or increases the frequency, rate or extent of neurofibrillary tangle assembly. tmpzr1t_l9r_go_relaxed.owl activation of star-shaped neurofibrillary tangle formation|activation of flame-shaped neurofibrillary tangle formation|positive regulation of neurofibrillary tangle formation|up-regulation of flame-shaped neurofibrillary tangle formation|upregulation of star-shaped neurofibrillary tangle assembly|up regulation of flame-shaped neurofibrillary tangle formation|up-regulation of neurofibrillary tangle formation|activation of star-shaped neurofibrillary tangle assembly|activation of flame-shaped neurofibrillary tangle assembly|up regulation of star-shaped neurofibrillary tangle assembly|positive regulation of star-shaped neurofibrillary tangle formation|positive regulation of flame-shaped neurofibrillary tangle formation|positive regulation of star-shaped neurofibrillary tangle assembly|up-regulation of flame-shaped neurofibrillary tangle assembly|activation of neurofibrillary tangle assembly|upregulation of star-shaped neurofibrillary tangle formation|upregulation of flame-shaped neurofibrillary tangle assembly|up-regulation of star-shaped neurofibrillary tangle formation|up regulation of star-shaped neurofibrillary tangle formation|up regulation of neurofibrillary tangle formation|up regulation of flame-shaped neurofibrillary tangle assembly|up regulation of neurofibrillary tangle assembly|upregulation of flame-shaped neurofibrillary tangle formation|positive regulation of flame-shaped neurofibrillary tangle assembly|upregulation of neurofibrillary tangle formation|upregulation of neurofibrillary tangle assembly|up-regulation of neurofibrillary tangle assembly|activation of neurofibrillary tangle formation|up-regulation of star-shaped neurofibrillary tangle assembly sjp 2014-05-08T15:44:45Z biological_process owl:Class GO:1902996 biolink:NamedThing regulation of neurofibrillary tangle assembly Any process that modulates the frequency, rate or extent of neurofibrillary tangle assembly. tmpzr1t_l9r_go_relaxed.owl regulation of neurofibrillary tangle formation|regulation of flame-shaped neurofibrillary tangle assembly|regulation of flame-shaped neurofibrillary tangle formation|regulation of star-shaped neurofibrillary tangle assembly|regulation of star-shaped neurofibrillary tangle formation sjp 2014-05-08T15:44:27Z biological_process owl:Class GO:0039511 biolink:NamedThing suppression by virus of host interferon receptor activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host interferon receptor. tmpzr1t_l9r_go_relaxed.owl down-regulation by virus of host interferon receptor activity|negative regulation by virus of host interferon receptor activity|inhibition by virus of host interferon receptor activity|inhibition of host interferon receptors by virus|downregulation by virus of host interferon receptor activity VZ:843 bf 2011-06-16T02:24:05Z biological_process owl:Class GO:0051476 biolink:NamedThing mannosylglycerate transport The directed movement of mannosylglycerate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900496 biolink:NamedThing positive regulation of butyryl-CoA biosynthetic process from acetyl-CoA Any process that activates or increases the frequency, rate or extent of butyryl-CoA biosynthetic process from acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl up-regulation of butyryl-CoA biosynthetic process from acetyl-CoA|upregulation of butyryl-CoA biosynthetic process from acetyl-CoA|up-regulation of butyryl-CoA biosynthesis from acetyl-CoA|activation of butyryl-CoA biosynthetic process from acetyl-CoA|positive regulation of butyryl-CoA biosynthesis from acetyl-CoA|upregulation of butyryl-CoA biosynthesis from acetyl-CoA|activation of butyryl-CoA biosynthesis from acetyl-CoA|up regulation of butyryl-CoA biosynthetic process from acetyl-CoA|up regulation of butyryl-CoA biosynthesis from acetyl-CoA tt 2012-05-02T03:51:58Z biological_process owl:Class GO:0033468 biolink:NamedThing CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism|CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis|CMP-KDO biosynthetic process|CMP-KDO biosynthesis|CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis|CMP-ketodeoxyoctanoate biosynthetic process|CMP-keto-3-deoxy-D-manno-octulosonic acid formation MetaCyc:PWY-5111|MetaCyc:KDOSYN-PWY|MetaCyc:PWY-1269 biological_process owl:Class GO:0051409 biolink:NamedThing response to nitrosative stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036103 biolink:NamedThing Kdo2-lipid A metabolic process The chemical reactions and pathways involving Kdo2-lipid A, a lipopolysaccharide (LPS) component. tmpzr1t_l9r_go_relaxed.owl Kdo2-lipid A metabolism bf 2012-01-27T01:49:16Z biological_process owl:Class GO:1901437 biolink:NamedThing regulation of toluene metabolic process Any process that modulates the frequency, rate or extent of toluene metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of methylbenzene metabolism|regulation of toluene metabolism|regulation of methylbenzene metabolic process tt 2012-10-01T21:17:41Z biological_process owl:Class GO:0003990 biolink:NamedThing acetylcholinesterase activity Catalysis of the reaction: acetylcholine + H2O = choline + acetate. tmpzr1t_l9r_go_relaxed.owl acetylthiocholinesterase activity|acetylcholine hydrolase activity|choline esterase I activity|AcCholE|true cholinesterase activity|acetyl.beta-methylcholinesterase activity|acetylcholine acetylhydrolase activity EC:3.1.1.7|MetaCyc:ACETYLCHOLINESTERASE-RXN|Reactome:R-HSA-372519|RHEA:17561 molecular_function owl:Class GO:0004104 biolink:NamedThing cholinesterase activity Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion. tmpzr1t_l9r_go_relaxed.owl acylcholine acylhydrolase activity|butyrylcholinesterase activity|non-specific cholinesterase activity|choline esterase II (unspecific) activity|benzoylcholinesterase activity|BtChoEase activity|propionylcholinesterase activity|anticholineesterase activity|pseudocholinesterase activity|butyrylcholine esterase activity|choline esterase activity EC:3.1.1.8|RHEA:21964|MetaCyc:CHOLINESTERASE-RXN molecular_function owl:Class GO:0035641 biolink:NamedThing locomotory exploration behavior The specific movement from place to place of an organism in response to a novel environment. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-19T10:40:04Z biological_process owl:Class GO:0035640 biolink:NamedThing exploration behavior The specific behavior of an organism in response to a novel environment or stimulus. tmpzr1t_l9r_go_relaxed.owl open-field behavior|exploratory behavior|exploration behaviour|exploratory behaviour For changes in locomotory behavior upon introduction to a novel environment, consider instead the child term: locomotory exploration behavior ; GO:0035641. bf 2011-01-19T10:35:45Z biological_process owl:Class GO:0034345 biolink:NamedThing negative regulation of type III interferon production Any process that stops, prevents, or reduces the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl negative regulation of type III IFN production|inhibition of type III interferon production|down-regulation of type III interferon production|down regulation of type III interferon production|downregulation of type III interferon production Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. biological_process owl:Class GO:0015730 biolink:NamedThing propanoate transport The directed movement of propionate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl propionate transport biological_process owl:Class GO:0015912 biolink:NamedThing short-chain fatty acid transport The directed movement of short-chain fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Short-chain fatty acids are fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001073 biolink:NamedThing transcription antitermination factor activity, DNA binding Binds to DNA, typically within region of the promoter and transcribed region, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind DNA include the lambda Q protein. tmpzr1t_l9r_go_relaxed.owl DNA binding transcription antitermination factor activity krc 2010-10-21T05:18:52Z molecular_function owl:Class GO:0046319 biolink:NamedThing positive regulation of glucosylceramide biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucosylceramide synthesis|stimulation of glucosylceramide biosynthetic process|positive regulation of glucosylceramide anabolism|activation of glucosylceramide biosynthetic process|positive regulation of glucosylceramide biosynthesis|up regulation of glucosylceramide biosynthetic process|up-regulation of glucosylceramide biosynthetic process|upregulation of glucosylceramide biosynthetic process|positive regulation of glucosylceramide formation biological_process owl:Class GO:1904439 biolink:NamedThing negative regulation of iron ion import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of iron ions import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of ferrous iron import across plasma membrane|down regulation of ferrous iron import across plasma membrane|inhibition of ferrous ion import into cell|downregulation of ferrous ion import into cell|down-regulation of ferrous iron import across plasma membrane|down-regulation of ferrous ion import into cell|downregulation of ferrous iron import across plasma membrane|negative regulation of ferrous iron import across plasma membrane|negative regulation of ferrous ion import into cell|down regulation of ferrous ion import into cell|negative regulation of ferrous iron import into cell rl 2015-07-06T13:49:58Z GO:1903990 biological_process owl:Class GO:0045798 biolink:NamedThing negative regulation of chromatin assembly or disassembly Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin assembly or disassembly. tmpzr1t_l9r_go_relaxed.owl downregulation of chromatin assembly or disassembly|negative regulation of chromatin assembly/disassembly|down-regulation of chromatin assembly or disassembly|inhibition of chromatin assembly or disassembly|down regulation of chromatin assembly or disassembly biological_process owl:Class GO:1905662 biolink:NamedThing negative regulation of telomerase RNA reverse transcriptase activity Any process that stops, prevents or reduces the frequency, rate or extent of telomerase RNA reverse transcriptase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of telomerase, catalyst|inhibition of telomerase, catalyst|negative regulation of telomerase, catalyst|down-regulation of telomerase, catalyst|inhibition of telomerase RNA reverse transcriptase activity|down-regulation of telomerase RNA reverse transcriptase activity|down regulation of telomerase RNA reverse transcriptase activity|downregulation of telomerase RNA reverse transcriptase activity|down regulation of telomerase, catalyst nc 2016-11-09T16:55:28Z biological_process owl:Class GO:0003424 biolink:NamedThing establishment of cell polarity involved in growth plate cartilage chondrocyte division The cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization that results in the directional division of a growth plate cartilage chondrocyte. tmpzr1t_l9r_go_relaxed.owl growth plate cartilage chondrocyte polarization dph 2009-12-22T10:18:10Z biological_process owl:Class GO:0008594 biolink:NamedThing photoreceptor cell morphogenesis The process in which the structures of a photoreceptor cell are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a photoreceptor cell, a sensory cell that reacts to the presence of light. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl photoreceptor development biological_process owl:Class GO:0090201 biolink:NamedThing negative regulation of release of cytochrome c from mitochondria Any process that decreases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation. tmpzr1t_l9r_go_relaxed.owl The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly and negatively regulate this process. tb 2009-12-18T11:35:20Z biological_process owl:Class GO:0090199 biolink:NamedThing regulation of release of cytochrome c from mitochondria Any process that modulates the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation. tmpzr1t_l9r_go_relaxed.owl The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly regulate this process. tb 2009-12-18T11:35:20Z biological_process owl:Class GO:0009255 biolink:NamedThing Entner-Doudoroff pathway through 6-phosphogluconate A pathway that converts a carbohydrate to pyruvate and glyceraldehyde-3 phosphate by producing 6-phosphogluconate and then dehydrating it. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ENTNER-DOUDOROFF-PWY-I biological_process owl:Class GO:0090327 biolink:NamedThing negative regulation of locomotion involved in locomotory behavior Any process that decreases the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:26:58Z biological_process owl:Class GO:0051724 biolink:NamedThing NAD transmembrane transporter activity Enables the transfer of NAD from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl NAD transporter activity|NAD (oxidized) transporter activity|nicotinamide adenine dinucleotide transmembrane transporter activity|NAD (reduced) transporter activity|oxidized NAD transporter activity|reduced nicotinamide adenine dinucleotide transmembrane transporter activity|NAD+ transporter activity|reduced NAD transporter activity|oxidized nicotinamide adenine dinucleotide transmembrane transporter activity|NADH transporter activity NAD carrier jl 2012-09-19T13:21:08Z GO:1901368 molecular_function owl:Class GO:1905592 biolink:NamedThing negative regulation of optical nerve axon regeneration Any process that stops, prevents or reduces the frequency, rate or extent of optical nerve axon regeneration. tmpzr1t_l9r_go_relaxed.owl inhibition of optical nerve axon regeneration|down-regulation of optical nerve axon regeneration|down regulation of optical nerve axon regeneration|downregulation of optical nerve axon regeneration pga 2016-10-25T12:58:50Z biological_process owl:Class GO:1902812 biolink:NamedThing regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that modulates the frequency, rate or extent of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination mr 2014-03-26T21:18:44Z biological_process owl:Class GO:0071908 biolink:NamedThing determination of intestine left/right asymmetry Determination of the asymmetric location of the intestine loops with respect to the left and right halves of the organism. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-22T10:24:33Z biological_process owl:Class GO:0071907 biolink:NamedThing determination of digestive tract left/right asymmetry Determination of the asymmetric location of various parts of the digestive tract with respect to the left and right halves of the organism. The digestive tract is the anatomical structure through which food passes and is processed. tmpzr1t_l9r_go_relaxed.owl determination of gut left/right asymmetry|determination of left/right asymmetry of the digestive tract mah 2010-09-22T10:14:29Z biological_process owl:Class GO:0034716 biolink:NamedThing Gemin3-Gemin4-Gemin5 complex A protein complex that contains Gemin3 (DDX20), Gemin4, and Gemin5, and can bind to snRNAs; may be an intermediate in SMN complex assembly. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035561 biolink:NamedThing regulation of chromatin binding Any process that modulates the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-19T10:28:36Z biological_process owl:Class GO:0061518 biolink:NamedThing microglial cell proliferation The expansion of a microglial cell population by cell division. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:20:21Z biological_process owl:Class GO:0061517 biolink:NamedThing macrophage proliferation The expansion of a macrophage population by cell division. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:17:56Z biological_process owl:Class GO:0005163 biolink:NamedThing nerve growth factor receptor binding Binding to a nerve growth factor receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin|NGF receptor binding|nerve growth factor receptor ligand molecular_function owl:Class GO:1900973 biolink:NamedThing positive regulation of sarcinapterin biosynthetic process Any process that activates or increases the frequency, rate or extent of sarcinapterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of sarcinapterin anabolism|upregulation of sarcinapterin synthesis|up-regulation of sarcinapterin formation|up regulation of sarcinapterin anabolism|up regulation of sarcinapterin biosynthesis|up-regulation of sarcinapterin biosynthetic process|activation of sarcinapterin synthesis|up-regulation of sarcinapterin biosynthesis|upregulation of sarcinapterin formation|up-regulation of sarcinapterin anabolism|upregulation of sarcinapterin biosynthetic process|positive regulation of sarcinapterin synthesis|activation of sarcinapterin biosynthesis|activation of sarcinapterin anabolism|up-regulation of sarcinapterin synthesis|up regulation of sarcinapterin biosynthetic process|activation of sarcinapterin formation|activation of sarcinapterin biosynthetic process|up regulation of sarcinapterin synthesis|up regulation of sarcinapterin formation|positive regulation of sarcinapterin anabolism|upregulation of sarcinapterin biosynthesis|positive regulation of sarcinapterin biosynthesis|positive regulation of sarcinapterin formation tt 2012-06-14T04:00:14Z biological_process owl:Class GO:0050293 biolink:NamedThing steroid-lactonase activity Catalysis of the reaction: H(2)O + testololactone = H(+) + testolate. tmpzr1t_l9r_go_relaxed.owl testololactone lactonohydrolase activity EC:3.1.1.37|RHEA:13721|KEGG_REACTION:R03641|MetaCyc:STEROID-LACTONASE-RXN molecular_function owl:Class GO:1900813 biolink:NamedThing monodictyphenone metabolic process The chemical reactions and pathways involving monodictyphenone. tmpzr1t_l9r_go_relaxed.owl monodictyphenone metabolism di 2012-06-04T10:11:03Z biological_process owl:Class GO:0047414 biolink:NamedThing 2-(hydroxymethyl)-3-(acetamidomethylene)succinate hydrolase activity Catalysis of the reaction: (2Z)-2-(acetamidomethylene)-3-(hydroxymethyl)succinate + 2 H(2)O + H(+) = 2-(hydroxymethyl)-4-oxobutanoate + acetate + CO(2) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 2-(hydroxymethyl)-3-(acetamidomethylene)succinate amidohydrolase (deaminating, decarboxylating)|alpha-hydroxymethyl-alpha'-(N-acetylaminomethylene)succinic acid hydrolase activity|compound B hydrolase activity Wikipedia:2-(hydroxymethyl)-3-(acetamidomethylene)succinate_amidohydrolase_(deaminating,_decarboxylating)|MetaCyc:3.5.1.66-RXN|RHEA:17677|KEGG_REACTION:R04397|EC:3.5.1.66 molecular_function owl:Class GO:1901153 biolink:NamedThing paromomycin metabolic process The chemical reactions and pathways involving paromomycin. tmpzr1t_l9r_go_relaxed.owl paromomycin metabolism yaf 2012-07-17T04:27:20Z biological_process owl:Class GO:0008910 biolink:NamedThing kanamycin kinase activity Catalysis of the reaction: ATP + kanamycin = ADP + 2 H(+) + kanamycin 3'-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:kanamycin 3'-O-phosphotransferase activity|neomycin-kanamycin phosphotransferase activity|APH(3') activity|neomycin phosphotransferase activity|aminoglycoside 3'-phosphotransferase activity|kanamycin kinase (phosphorylating) EC:2.7.1.95|KEGG_REACTION:R01888|MetaCyc:KANAMYCIN-KINASE-RXN|RHEA:24256 molecular_function owl:Class GO:0070252 biolink:NamedThing actin-mediated cell contraction The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of all or part of the cell body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038124 biolink:NamedThing toll-like receptor TLR6:TLR2 signaling pathway A series of molecular signals initiated by the binding of a heterodimeric TLR6:TLR2 complex to one of it's physiological ligands, followed by transmission of the signal by the activated receptor, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl TLR2:TLR6 signaling pathway|toll-like receptor TLR6:TLR2 signalling pathway bf 2012-03-23T10:29:09Z biological_process owl:Class GO:0050352 biolink:NamedThing trimethylamine-oxide aldolase activity Catalysis of the reaction: H(+) + trimethylamine N-oxide = dimethylamine + formaldehyde. tmpzr1t_l9r_go_relaxed.owl trimethylamine N-oxide formaldehyde-lyase activity|trimethylamine-N-oxide formaldehyde-lyase (dimethylamine-forming)|trimethylamine N-oxide demethylase activity|trimethylamine N-oxide aldolase activity|trimethylamine-N-oxide formaldehyde-lyase activity MetaCyc:TRIMETHYLAMINE-OXIDE-ALDOLASE-RXN|KEGG_REACTION:R02512|UM-BBD_reactionID:r1409|EC:4.1.2.32|RHEA:20217 molecular_function owl:Class GO:0010101 biolink:NamedThing post-embryonic root morphogenesis The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035595 biolink:NamedThing N-acetylglucosaminylinositol deacetylase activity Catalysis of the reaction: 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside + H2O = 1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside + acetate. This reaction is the hydrolysis of an acetyl group from N-acetylglucosaminylinositol. tmpzr1t_l9r_go_relaxed.owl 1-(2-acetamido-2-deoxy-alpha-D-glucopyranosyl)-1D-myo-inositol acetylhydrolase activity|GlcNAc-Ins deacetylase activity|N-acetyl-1D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase activity|1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase activity KEGG_REACTION:R09651|RHEA:26180|EC:3.5.1.103|MetaCyc:RXN1G-2 bf 2010-11-11T02:12:48Z molecular_function owl:Class GO:0140469 biolink:NamedThing GCN2-mediated signaling A series of reactions in which a signal is passed on to downstream proteins within the cell via GCN2 (also known as EIF2AK4), an intracellular protein kinase that is activated by stress signals, such as amino acid starvation. tmpzr1t_l9r_go_relaxed.owl EIF2AK4-mediated signaling|regulation of eIF2 alpha phosphorylation by amino acid starvation https://github.com/geneontology/go-ontology/issues/15399|https://github.com/geneontology/go-ontology/issues/19153 pg 2020-05-26T08:47:25Z GO:0060733 biological_process owl:Class GO:0046334 biolink:NamedThing octopamine catabolic process The chemical reactions and pathways resulting in the breakdown of octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species. tmpzr1t_l9r_go_relaxed.owl octopamine degradation|octopamine breakdown|octopamine catabolism biological_process owl:Class GO:0061841 biolink:NamedThing high-affinity iron exporter complex A protein complex which transports ferrous iron (Fe(III) or Fe3+) ions from the vacuole, the main storage component of intracellular free iron, into the cytoplasm in a low iron environment. tmpzr1t_l9r_go_relaxed.owl FET5-FTH1 high-affinity iron exporter complex|FET5-FTH1 high affinity iron exporter complex|high affinity iron exporter complex An example of this is FET5 in Saccharomyces cerevisiae (P43561) in PMID:9413439. cellular_component owl:Class GO:1905862 biolink:NamedThing ferroxidase complex A protein complex which is capable of ferroxidase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is FET3 in Saccharomyces cerevisiae (P38993) in PMID:16522632 (inferred from direct assay). bhm 2017-01-25T10:01:39Z cellular_component owl:Class GO:0002500 biolink:NamedThing proteolysis within lysosome associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein by lysosomal resident proteases contributing to antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl lysosomal proteolysis associated with antigen processing and presentation biological_process owl:Class GO:0048831 biolink:NamedThing regulation of shoot system development Any process that modulates the frequency, rate or extent of shoot development. tmpzr1t_l9r_go_relaxed.owl regulation of shoot development biological_process owl:Class GO:0008290 biolink:NamedThing F-actin capping protein complex A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060786 biolink:NamedThing regulation of cell differentiation involved in tissue homeostasis Any process that modulates the frequency, rate or extent of cell differentiation that contributes to the maintenance of a steady state of a cell type within a tissue. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-31T01:55:19Z biological_process owl:Class GO:1901033 biolink:NamedThing positive regulation of response to reactive oxygen species Any process that activates or increases the frequency, rate or extent of response to reactive oxygen species. tmpzr1t_l9r_go_relaxed.owl up regulation of response to active oxygen species|activation of response to ROI|positive regulation of response to AOS|up regulation of response to ROI|up regulation of response to AOS|up-regulation of response to ROS|upregulation of response to reactive oxygen intermediate|up-regulation of response to AOS|activation of response to reactive oxidative species|positive regulation of response to ROI|upregulation of response to AOS|positive regulation of response to reactive oxidative species|activation of response to ROS|positive regulation of response to ROS|upregulation of response to reactive oxidative species|activation of response to reactive oxygen species|positive regulation of response to active oxygen species|up-regulation of response to reactive oxygen intermediate|upregulation of response to ROI|up-regulation of response to ROI|up-regulation of response to active oxygen species|positive regulation of response to reactive oxygen intermediate|up regulation of response to reactive oxidative species|up-regulation of response to reactive oxidative species|activation of response to reactive oxygen intermediate|up regulation of response to reactive oxygen intermediate|upregulation of response to active oxygen species|up regulation of response to reactive oxygen species|activation of response to active oxygen species|activation of response to AOS|up-regulation of response to reactive oxygen species|up regulation of response to ROS|upregulation of response to reactive oxygen species|upregulation of response to ROS kmv 2012-06-20T07:47:35Z biological_process owl:Class GO:0043504 biolink:NamedThing mitochondrial DNA repair The process of restoring mitochondrial DNA after damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905604 biolink:NamedThing negative regulation of blood-brain barrier permeability Any process that decreases blood-brain barrier permeability, the quality of the blood-brain barrier that allows for a controlled passage of substances (e.g. macromolecules, small molecules, ions) into and out of the brain. tmpzr1t_l9r_go_relaxed.owl down-regulation of blood-brain barrier permeability|downregulation of blood/brain barrier permeability|inhibition of maintenance of permeability of blood-brain barrier|downregulation of BBB permeability|inhibition of maintenance of permeability of BBB|down-regulation of BBB permeability|downregulation of blood-brain barrier permeability|down-regulation of blood/brain barrier permeability|negative regulation of blood/brain barrier permeability|negative regulation of BBB permeability als 2016-10-26T13:18:25Z biological_process owl:Class GO:0060781 biolink:NamedThing mesenchymal cell proliferation involved in prostate gland development The multiplication or reproduction of mesenchymal cells, resulting in the expansion of a cell population that contributes to the progression of the prostate gland over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-28T11:50:56Z biological_process owl:Class GO:1990245 biolink:NamedThing histone H2A-T120 phosphorylation The modification of histone H2A by the addition of a phosphate group to a threonine residue at position 120 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2A phosphorylation at T120|histone H2AT120 phosphorylation sp 2013-12-04T06:41:30Z biological_process owl:Class GO:0033092 biolink:NamedThing positive regulation of immature T cell proliferation in thymus Any process that activates or increases the frequency, rate or extent of immature T cell proliferation in the thymus. tmpzr1t_l9r_go_relaxed.owl positive regulation of thymocyte cell proliferation|positive regulation of thymocyte proliferation|positive regulation of thymic T cell proliferation biological_process owl:Class GO:0017086 biolink:NamedThing 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex A protein complex that catalyzes the reaction 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)-dihydrolipoamide + carbon dioxide (CO2). This requires thiamine diphosphate; the enzyme also acts on (S)-3-methyl-2-oxopentanoate and 4-methyl-2-oxo-pentanoate. tmpzr1t_l9r_go_relaxed.owl BCADH|branched-chain alpha-ketoacid dehydrogenase complex GO:0031212 cellular_component owl:Class GO:0004742 biolink:NamedThing dihydrolipoyllysine-residue acetyltransferase activity Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide. tmpzr1t_l9r_go_relaxed.owl thioltransacetylase A activity|lipoic transacetylase activity|lipoylacetyltransferase activity|transacetylase X activity|lipoic acid acetyltransferase activity|dihydrolipoamide S-acetyltransferase activity|lipoate acetyltransferase activity|acetyl-CoA: enzyme-6-N-(dihydrolipoyl)lysine S-acetyltransferase activity|enzyme-dihydrolipoyllysine:acetyl-CoA S-acetyltransferase activity|dihydrolipoate acetyltransferase activity|dihydrolipoic transacetylase activity|lipoate transacetylase activity|acetyl-CoA:dihydrolipoamide S-acetyltransferase activity|acetyl-CoA: enzyme-N6-(dihydrolipoyl)lysine S-acetyltransferase activity|dihydrolipoyl acetyltransferase activity|lipoic acetyltransferase activity EC:2.3.1.12 molecular_function owl:Class GO:0035675 biolink:NamedThing neuromast hair cell development The process whose specific outcome is the progression of a neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-14T11:01:42Z biological_process owl:Class GO:0061898 biolink:NamedThing all-trans retinoic acid 3,4-desaturase activity Catalysis of the reaction: all-trans-retinoic acid + 2 H(+) + O2 + 2 reduced [adrenodoxin] = all-trans-3,4-didehydro retinoic acid + 2 H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-12T15:01:23Z molecular_function owl:Class GO:2000259 biolink:NamedThing positive regulation of protein activation cascade Any process that activates or increases the frequency, rate or extent of protein activation cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein activation pathway|positive regulation of protein activitory cascade mah 2010-11-23T11:33:55Z biological_process owl:Class GO:0046318 biolink:NamedThing negative regulation of glucosylceramide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucosylceramide biosynthesis|negative regulation of glucosylceramide anabolism|down regulation of glucosylceramide biosynthetic process|negative regulation of glucosylceramide synthesis|downregulation of glucosylceramide biosynthetic process|inhibition of glucosylceramide biosynthetic process|down-regulation of glucosylceramide biosynthetic process|negative regulation of glucosylceramide formation biological_process owl:Class GO:0038182 biolink:NamedThing G protein-coupled bile acid receptor activity Combining with an extracellular bile acid and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl membrane bile acid receptor activity|cell surface bile acid receptor|G-protein coupled bile acid receptor activity Wikipedia:G_protein-coupled_bile_acid_receptor bf 2013-05-16T10:29:42Z molecular_function owl:Class GO:0050248 biolink:NamedThing Renilla-luciferin 2-monooxygenase activity Catalysis of the reaction: Renilla luciferin + O2 = oxidized Renilla luciferin + CO2 + light. tmpzr1t_l9r_go_relaxed.owl Renilla-luciferin:oxygen 2-oxidoreductase (decarboxylating)|luciferase activity|Renilla-type luciferase activity|luciferase (Renilla luciferin)|aequorin activity MetaCyc:RENILLA-LUCIFERIN-2-MONOOXYGENASE-RXN|RHEA:14765|EC:1.13.12.5 molecular_function owl:Class GO:2000469 biolink:NamedThing negative regulation of peroxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of peroxidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of oxyperoxidase activity|negative regulation of peroxidase reaction|negative regulation of donor:hydrogen-peroxide oxidoreductase activity bf 2011-03-08T02:18:59Z biological_process owl:Class GO:0071060 biolink:NamedThing alpha7-beta1 integrin-CD151 complex A protein complex that consists of an alpha7-beta1 integrin complex bound to the tetraspanin CD151. tmpzr1t_l9r_go_relaxed.owl ITGA7-ITGB1-CD151 complex mah 2009-11-03T04:02:01Z cellular_component owl:Class GO:0003425 biolink:NamedThing establishment of mitotic spindle orientation involved in growth plate cartilage chondrocyte division A cell cycle process that sets the alignment of mitotic spindle relative to other cellular structures and contributes to oriented chondrocyte division in the growth plate. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T10:36:36Z biological_process owl:Class GO:0003426 biolink:NamedThing cytoskeleton polarization involved in growth plate cartilage chondrocyte division A process that is carried out at the cellular level which results in the polarization of cytoskeletal structures in a growth plate cartilage chondrocyte. This process results in the oriented division of the cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T11:38:22Z biological_process owl:Class GO:1900943 biolink:NamedThing positive regulation of (Z)-nonadeca-1,14-diene biosynthetic process Any process that activates or increases the frequency, rate or extent of (Z)-nonadeca-1,14-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of (Z)-nonadeca-1,14-diene synthesis|up-regulation of (Z)-nonadeca-1,14-diene biosynthesis|activation of (Z)-nonadeca-1,14-diene biosynthetic process|up regulation of (Z)-nonadeca-1,14-diene anabolism|upregulation of (Z)-nonadeca-1,14-diene biosynthetic process|upregulation of (Z)-nonadeca-1,14-diene biosynthesis|activation of (Z)-nonadeca-1,14-diene formation|activation of (Z)-nonadeca-1,14-diene anabolism|positive regulation of (Z)-nonadeca-1,14-diene biosynthesis|upregulation of (Z)-nonadeca-1,14-diene synthesis|activation of (Z)-nonadeca-1,14-diene biosynthesis|up regulation of (Z)-nonadeca-1,14-diene synthesis|up-regulation of (Z)-nonadeca-1,14-diene anabolism|up-regulation of (Z)-nonadeca-1,14-diene synthesis|up-regulation of (Z)-nonadeca-1,14-diene biosynthetic process|up regulation of (Z)-nonadeca-1,14-diene formation|up regulation of (Z)-nonadeca-1,14-diene biosynthesis|up regulation of (Z)-nonadeca-1,14-diene biosynthetic process|positive regulation of (Z)-nonadeca-1,14-diene synthesis|up-regulation of (Z)-nonadeca-1,14-diene formation|upregulation of (Z)-nonadeca-1,14-diene anabolism|positive regulation of (Z)-nonadeca-1,14-diene anabolism|upregulation of (Z)-nonadeca-1,14-diene formation|positive regulation of (Z)-nonadeca-1,14-diene formation tt 2012-06-14T03:18:01Z biological_process owl:Class GO:1905267 biolink:NamedThing endonucleolytic cleavage involved in tRNA processing Any endonucleolytic RNA phosphodiester bond hydrolysis that is involved in tRNA processing. tmpzr1t_l9r_go_relaxed.owl RNA phosphodiester bond hydrolysis, endonucleolytic involved in tRNA maturation al 2016-06-14T14:54:54Z biological_process owl:Class GO:0046526 biolink:NamedThing D-xylulose reductase activity Catalysis of the reaction: NAD(+) + xylitol = D-xylulose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl xylitol dehydrogenase activity RHEA:20433|EC:1.1.1.9|Reactome:R-HSA-5662471|MetaCyc:D-XYLULOSE-REDUCTASE-RXN|KEGG_REACTION:R01896 molecular_function owl:Class GO:0031320 biolink:NamedThing hexitol dehydrogenase activity Catalysis of the reaction: hexitol + acceptor = hexose + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071471 biolink:NamedThing cellular response to non-ionic osmotic stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T11:47:59Z biological_process owl:Class GO:0035873 biolink:NamedThing lactate transmembrane transport The process in which lactate is transported across a membrane. Lactate is 2-hydroxypropanoate, CH3-CHOH-COOH; L(+)-lactate is formed by anaerobic glycolysis in animal tissues, and DL-lactate is found in sour milk, molasses and certain fruit juices. tmpzr1t_l9r_go_relaxed.owl lactate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2011-05-31T09:26:59Z biological_process owl:Class GO:0047693 biolink:NamedThing ATP diphosphatase activity Catalysis of the reaction: ATP + H2O = AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl adenosine triphosphate pyrophosphatase activity|ATP diphosphohydrolase|ATP pyrophosphatase activity|ATP diphosphohydrolase (diphosphate-forming) MetaCyc:ATP-PYROPHOSPHATASE-RXN|RHEA:14245|EC:3.6.1.8 molecular_function owl:Class GO:0007615 biolink:NamedThing anesthesia-resistant memory The memory process that results in the formation of consolidated memory resistant to disruption of the patterned activity of the brain, without requiring protein synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900354 biolink:NamedThing regulation of methanofuran metabolic process Any process that modulates the frequency, rate or extent of methanofuran metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of methanofuran metabolism tt 2012-04-06T02:15:44Z biological_process owl:Class GO:0061983 biolink:NamedThing meiosis II cell cycle process A process that coontributes to the second meiotic division. The second meiotic division separates chromatids resulting in a haploid number of chromosomes. tmpzr1t_l9r_go_relaxed.owl second meiotic division dph 2018-02-14T22:37:44Z biological_process owl:Class GO:0061038 biolink:NamedThing uterus morphogenesis The process in which anatomical structures of the uterus are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-22T11:12:35Z biological_process owl:Class GO:0039505 biolink:NamedThing suppression by virus of host antigen processing and presentation of peptide antigen via MHC class II Any viral process that inhibits a host antigen-presenting cell expressing a peptide antigen on its cell surface in association with an MHC class II protein complex. tmpzr1t_l9r_go_relaxed.owl inhibition of host MHC class II molecule presentation by virus VZ:820 bf 2011-06-02T02:34:51Z biological_process owl:Class GO:0046352 biolink:NamedThing disaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of disaccharides, sugars composed of two monosaccharide units. tmpzr1t_l9r_go_relaxed.owl disaccharide catabolism|disaccharide breakdown|disaccharide degradation biological_process owl:Class GO:0016153 biolink:NamedThing urocanate hydratase activity Catalysis of the reaction: 4-imidazolone-5-propanoate + H(+) = trans-urocanate + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate hydro-lyase activity|urocanase activity|imidazolonepropionate hydrolase activity|3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate hydro-lyase (urocanate-forming) MetaCyc:UROCANATE-HYDRATASE-RXN|KEGG_REACTION:R02914|RHEA:13101|Reactome:R-HSA-70903|EC:4.2.1.49 molecular_function owl:Class GO:1901164 biolink:NamedThing negative regulation of trophoblast cell migration Any process that stops, prevents or reduces the frequency, rate or extent of trophoblast cell migration. tmpzr1t_l9r_go_relaxed.owl down-regulation of trophoblast cell migration|inhibition of trophoblast cell migration|down regulation of trophoblast cell migration|downregulation of trophoblast cell migration vk 2012-07-19T07:53:28Z biological_process owl:Class GO:2000352 biolink:NamedThing negative regulation of endothelial cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of programmed cell death, endothelial cells|negative regulation of programmed cell death of endothelial cells by apoptosis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell programmed cell death by apoptosis|negative regulation of apoptosis of endothelial cells|negative regulation of killing of endothelial cells mah 2011-02-03T10:43:20Z biological_process owl:Class GO:0080014 biolink:NamedThing thalianol hydroxylase activity Catalysis of the reaction: a thalianol = a thalian-diol. This reaction is the addition of a hydroxyl group to thalianol ((13R,14R,17E)-podioda-8,17,21-trien-3beta-ol) to create a thalian-diol ((13R,14R,17E)-podioda-8,17,21-trien-3beta,X-diol), where the hydroxyl group may be attached at one of several different available carbons in ring B or C of thalianol, indicated by the X. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9631|EC:1.14.13.- In Field and Osbourn 2008 (PMID:18356490), thalianol is referred to as (3S,13S,3R)-malabarica-8,17,21-trien-3-ol and thalian-diol is referred to as (3S,13S,14R)-malabarica-8,17,21-trien-3,?-diol, but the error in this naming system was pointed out in Kolesnikova 2007 (PMID:17474751). The new names used in the definition have been approved by the authors (Field and Osbourn 2008). molecular_function owl:Class GO:0004360 biolink:NamedThing glutamine-fructose-6-phosphate transaminase (isomerizing) activity Catalysis of the reaction: beta-D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl hexosephosphate aminotransferase activity|L-glutamine-D-fructose-6-phosphate amidotransferase activity|glucosamine--fructose-6-phosphate aminotransferase (isomerizing) activity|GlcN6P synthase activity|glucosaminephosphate isomerase|D-fructose-6-phosphate amidotransferase activity|glucosamine-6-phosphate isomerase (glutamine-forming) activity|L-glutamine:D-fructose-6-phosphate isomerase (deaminating)|glucosamine 6-phosphate synthase activity|glucosamine-6-phosphate synthase activity KEGG_REACTION:R00768|Reactome:R-HSA-4085027|Reactome:R-HSA-449715|RHEA:13237|EC:2.6.1.16|MetaCyc:L-GLN-FRUCT-6-P-AMINOTRANS-RXN molecular_function owl:Class GO:0070548 biolink:NamedThing L-glutamine aminotransferase activity Catalysis of the transfer of an amino group from L-glutamine to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043319 biolink:NamedThing positive regulation of cytotoxic T cell degranulation Any process that activates or increases the frequency, rate or extent of cytotoxic T cell degranulation. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytotoxic T cell granule exocytosis|positive regulation of cytotoxic T-lymphocyte granule exocytosis|stimulation of cytotoxic T cell degranulation|activation of cytotoxic T cell degranulation|positive regulation of cytotoxic T lymphocyte degranulation|positive regulation of cytotoxic T-cell degranulation|positive regulation of cytotoxic T-cell granule exocytosis|positive regulation of cytotoxic T lymphocyte granule exocytosis|upregulation of cytotoxic T cell degranulation|up regulation of cytotoxic T cell degranulation|positive regulation of cytotoxic T-lymphocyte degranulation|up-regulation of cytotoxic T cell degranulation biological_process owl:Class GO:0102545 biolink:NamedThing phosphatidyl phospholipase B activity Catalysis of the reaction: 2 H2O + a phosphatidylcholine = sn-glycero-3-phosphocholine + 2 H+ + 2 a carboxylate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14899|EC:3.1.1.5 molecular_function owl:Class GO:1990522 biolink:NamedThing tail spike morphogenesis The process in which the nematode tail spike is generated and organized. An example of this process is seen in C. elegans, where the tapered tail spike is formed during embryogenesis by a filamentous process that passes posteriorly through hyp10, the tail ventral hypodermis; the filamentous process is formed by a binucleate cell, the tail-spike cell, that subsequently undergoes programmed cell death. tmpzr1t_l9r_go_relaxed.owl WBbt:0008072|WBbt:0006979 jl 2014-10-23T15:20:15Z biological_process owl:Class GO:1905607 biolink:NamedThing negative regulation of presynapse assembly Any process that stops, prevents or reduces the frequency, rate or extent of presynapse assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of presynapse assembly|inhibition of presynapse biogenesis|down-regulation of presynapse assembly|downregulation of presynapse biogenesis|down regulation of presynapse biogenesis|inhibition of presynaptic terminal assembly|downregulation of presynaptic terminal assembly|down-regulation of presynaptic terminal assembly|down-regulation of presynapse biogenesis|down regulation of presynapse assembly|inhibition of presynapse assembly|negative regulation of presynapse biogenesis|negative regulation of presynaptic terminal assembly|down regulation of presynaptic terminal assembly bc 2016-10-27T16:08:20Z biological_process owl:Class GO:1900088 biolink:NamedThing regulation of inositol biosynthetic process Any process that modulates the frequency, rate or extent of inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of inositol synthesis|regulation of inositol anabolism|regulation of myo-inositol biosynthetic process|regulation of inositol formation|regulation of vitamin Bh biosynthesis|regulation of myo-inositol biosynthesis|regulation of inositol biosynthesis|regulation of vitamin Bh biosynthetic process dhl 2012-02-08T06:27:11Z biological_process owl:Class GO:0002099 biolink:NamedThing tRNA wobble guanine modification The process in which a guanine in t position 34 of a tRNA is post-transcriptionally modified. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016092 biolink:NamedThing prenol catabolic process The chemical reactions and pathways resulting in the breakdown of prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail. tmpzr1t_l9r_go_relaxed.owl prenol degradation|prenol catabolism|prenol breakdown biological_process owl:Class GO:0045677 biolink:NamedThing negative regulation of R7 cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of R7cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of R7 differentiation|negative regulation of R7 differentiation|inhibition of R7 differentiation|down regulation of R7 differentiation|downregulation of R7 differentiation biological_process owl:Class GO:0021957 biolink:NamedThing corticospinal tract morphogenesis Generation of a long process of a pyramidal cell, that carries efferent (outgoing) action potentials from the cell body in cerebral cortex layer V towards target cells in the gray matter of the spinal cord. This axonal process is a member of those that make up the corticospinal tract. tmpzr1t_l9r_go_relaxed.owl corticospinal tract axonogenesis|CST axonogenesis biological_process owl:Class GO:0061339 biolink:NamedThing establishment or maintenance of monopolar cell polarity Any cellular process that results in the specification, formation or maintenance of monopolar intracellular organization or cell growth patterns. Monopolar cell organization is directional organization along an axis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T09:10:05Z biological_process owl:Class GO:1900739 biolink:NamedThing regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway Any process that modulates the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of protein insertion into mitochondrial membrane involved in induction of apoptosis|regulation of protein insertion into mitochondrion membrane during induction of apoptosis|regulation of protein insertion into mitochondrial membrane during induction of apoptosis|regulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis pr 2012-05-28T02:28:18Z biological_process owl:Class GO:0008693 biolink:NamedThing 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity Catalysis of the reaction: (3R)-3-hydroxydecanoyl-[acyl-carrier protein] = 2,3-decenoyl-[acyl-carrier protein] or 3,4-decenoyl-[acyl-carrier protein] + H2O. tmpzr1t_l9r_go_relaxed.owl beta-hydroxydecanoyl thioester dehydrase activity|beta-hydroxydecanoate dehydrase activity|beta-hydroxyacyl-ACP dehydrase activity|3-hydroxydecanoyl-acyl-carrier-protein dehydratase activity|D-3-hydroxydecanoyl-acyl-carrier-protein dehydratase activity|beta-hydroxydecanoyl thiol ester dehydrase activity|HDDase activity|FabA|3-hydroxydecanoyl-acyl carrier protein dehydratase activity|beta-hydroxyacyl-acyl carrier protein dehydratase activity|3-hydroxydecanoyl-[acyl-carrier protein] dehydratase activity|3-hydroxydecanoyl-acyl carrier protein dehydrase activity|3-hydroxydecanoyl-ACP dehydratase activity|D-3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity|(3R)-3-hydroxydecanoyl-acyl-carrier-protein hydro-lyase activity RHEA:41860|EC:4.2.1.59 molecular_function owl:Class GO:0032592 biolink:NamedThing integral component of mitochondrial membrane The component of the mitochondrial membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to mitochondrial membrane cellular_component owl:Class GO:0010258 biolink:NamedThing NADH dehydrogenase complex (plastoquinone) assembly The aggregation, arrangement and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002234 biolink:NamedThing detection of endoplasmic reticulum overloading The series of events in which a stimulus generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of ER overloading biological_process owl:Class GO:0030473 biolink:NamedThing nuclear migration along microtubule The directed movement of the nucleus along microtubules within the cell, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl transport of nucleus by microtubules|microtubule-dependent nuclear positioning|nuclear movement, microtubule-mediated|microtubule-mediated nuclear migration|transport of nucleus, microtubule-mediated|microtubule cytoskeleton-dependent nucleus positioning|nucleus migration|microtubule-dependent nucleus positioning|nuclear migration, microtubule-mediated|microtubule cytoskeleton-dependent nuclear positioning GO:0000065 biological_process owl:Class GO:0043038 biolink:NamedThing amino acid activation The modification of an amino acid to an active form, for incorporation into a peptide, protein or other macromolecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051325 biolink:NamedThing interphase The cell cycle phase following cytokinesis which begins with G1 phase, proceeds through S phase and G2 phase and ends when prophase of meiosis or mitosis begins. During interphase the cell readies itself for meiosis or mitosis and the replication of its DNA occurs. tmpzr1t_l9r_go_relaxed.owl karyostasis|resting phase Wikipedia:Interphase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0110155 biolink:NamedThing NAD-cap decapping Cleavage of the 5'-NAD-cap of an RNA. The NAD-cap is present at the 5'-end of some RNAs in both bacetria and eukaryotes. While it promotes RNA stability in bacteria, it promotes RNA decay in eukaryotes. tmpzr1t_l9r_go_relaxed.owl kmv 2019-07-08T17:27:56Z biological_process owl:Class GO:0110154 biolink:NamedThing RNA decapping Cleavage of the 5'-cap of an RNA. tmpzr1t_l9r_go_relaxed.owl kmv 2019-07-08T17:23:59Z biological_process owl:Class GO:0043852 biolink:NamedThing monomethylamine methyltransferase activity Catalysis of the reaction: monomethylamine + a monomethylamine corrinoid protein = a methylated monomethylamine corrinoid protein + NH3. tmpzr1t_l9r_go_relaxed.owl monomethylamine:corrinoid methyltransferase activity|MtmB|MMAMT RHEA:26059|MetaCyc:RXN-8098|EC:2.1.1.248 This function is the first step in the pathway of methanogenesis from monomethylamine. molecular_function owl:Class GO:0019147 biolink:NamedThing (R)-aminopropanol dehydrogenase activity Catalysis of the reaction: (R)-1-aminopropan-2-ol + NAD(+) = aminoacetone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 1-aminopropan-2-ol-dehydrogenase activity|L-aminopropanol dehydrogenase activity|DL-1-aminopropan-2-ol: NAD+ dehydrogenase activity|(R)-1-aminopropan-2-ol:NAD+ oxidoreductase activity|1-aminopropan-2-ol-NAD+ dehydrogenase activity|L(+)-1-aminopropan-2-ol:NAD+ oxidoreductase activity|L(+)-1-aminopropan-2-ol-NAD/NADP oxidoreductase activity MetaCyc:AMINOPROPDEHYDROG-RXN|RHEA:16517|EC:1.1.1.75|KEGG_REACTION:R03759 molecular_function owl:Class GO:2000857 biolink:NamedThing positive regulation of mineralocorticoid secretion Any process that activates or increases the frequency, rate or extent of mineralocorticoid secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:46:45Z biological_process owl:Class GO:1900481 biolink:NamedThing negative regulation of diacylglycerol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of diacylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of diacylglycerol anabolism|down-regulation of diacylglycerol biosynthesis|inhibition of diacylglycerol synthesis|downregulation of diacylglycerol biosynthesis|downregulation of diacylglycerol anabolism|downregulation of diacylglycerol synthesis|negative regulation of diacylglycerol formation|inhibition of diacylglycerol biosynthetic process|negative regulation of diacylglycerol anabolism|inhibition of diacylglycerol biosynthesis|down-regulation of diacylglycerol anabolism|down regulation of diacylglycerol biosynthesis|downregulation of diacylglycerol biosynthetic process|down-regulation of diacylglycerol biosynthetic process|down regulation of diacylglycerol formation|down-regulation of diacylglycerol synthesis|down regulation of diacylglycerol biosynthetic process|down regulation of diacylglycerol anabolism|negative regulation of diacylglycerol biosynthesis|down-regulation of diacylglycerol formation|inhibition of diacylglycerol formation|down regulation of diacylglycerol synthesis|negative regulation of diacylglycerol synthesis|downregulation of diacylglycerol formation al 2012-05-02T10:09:09Z biological_process owl:Class GO:0009843 biolink:NamedThing cyanelle thylakoid A thylakoid found in a cyanelle, which is a type of plastid found in certain algae. The cyanelle contains a photosynthetic membrane resembling that of cyanobacteria. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005712 biolink:NamedThing chiasma A connection formed between chromatids, visible during meiosis, thought to be the point of the interchange involved in crossing-over. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chiasma_(genetics) cellular_component owl:Class GO:1900794 biolink:NamedThing terrequinone A metabolic process The chemical reactions and pathways involving terrequinone A. tmpzr1t_l9r_go_relaxed.owl terrequinone A metabolism di 2012-06-04T09:45:20Z biological_process owl:Class GO:1902233 biolink:NamedThing negative regulation of positive thymic T cell selection Any process that stops, prevents or reduces the frequency, rate or extent of positive thymic T cell selection. tmpzr1t_l9r_go_relaxed.owl negative regulation of positive thymic T-lymphocyte selection|down-regulation of positive thymic T cell selection|inhibition of positive thymic T-cell selection|down-regulation of positive thymic T lymphocyte selection|down-regulation of positive thymic T-cell selection|inhibition of positive thymic T-lymphocyte selection|negative regulation of positive thymic T-cell selection|down regulation of positive thymic T lymphocyte selection|downregulation of positive thymic T-cell selection|downregulation of positive thymic T lymphocyte selection|down-regulation of positive thymic T-lymphocyte selection|inhibition of positive thymic T cell selection|down regulation of positive thymic T-cell selection|down regulation of positive thymic T-lymphocyte selection|downregulation of positive thymic T cell selection|inhibition of positive thymic T lymphocyte selection|downregulation of positive thymic T-lymphocyte selection|negative regulation of positive thymic T lymphocyte selection|down regulation of positive thymic T cell selection lb 2013-06-14T11:19:15Z biological_process owl:Class GO:0008424 biolink:NamedThing glycoprotein 6-alpha-L-fucosyltransferase activity Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP-L-fucose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-[alpha-L-fucosyl-(1->6)]-N-acetyl-beta-D-glucosaminyl}asparagine + GDP + H(+). tmpzr1t_l9r_go_relaxed.owl GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha(1->6)fucosyltransferase activity|GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-(1->6)fucosyltransferase activity|glycoprotein fucosyltransferase activity|GDP-fucose--glycoprotein fucosyltransferase activity|FucT|guanosine diphosphofucose--glycoprotein fucosyltransferase activity|GDP-L-fucose--glycoprotein fucosyltransferase activity|GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha(1,6)fucosyltransferase activity|GDPfucose-glycoprotein fucosyltransferase activity|GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-(1,6)fucosyltransferase activity EC:2.4.1.68|Reactome:R-HSA-9696980|Reactome:R-HSA-1028788|RHEA:12985|MetaCyc:2.4.1.68-RXN|KEGG_REACTION:R05988 molecular_function owl:Class GO:0031642 biolink:NamedThing negative regulation of myelination Any process that stops, prevents, or reduces the frequency, rate or extent of the formation of a myelin sheath around nerve axons. tmpzr1t_l9r_go_relaxed.owl downregulation of myelination|down-regulation of myelination|inhibition of myelination|down regulation of myelination biological_process owl:Class GO:0018706 biolink:NamedThing pyrogallol hydroxytransferase activity Catalysis of the reaction: 1,2,3,5-tetrahydroxybenzene + 1,2,3-trihydroxybenzene = 1,3,5-trihydroxybenzene + 1,2,3,5-tetrahydroxybenzene. tmpzr1t_l9r_go_relaxed.owl 1,2,3,5-tetrahydroxybenzene-pyrogallol hydroxyltransferase (transhydroxylase)|transhydroxylase activity|pyrogallol hydroxyltransferase activity|1,2,3,5-tetrahydroxybenzene hydroxyltransferase activity|1,2,3,5-tetrahydroxybenzene:1,2,3-trihydroxybenzene hydroxyltransferase activity|1,2,3,5-tetrahydroxybenzene:1,2,3-trihydroxybenzene hydroxytransferase activity|1,2,3,5-tetrahydroxybenzene:pyrogallol transhydroxylase activity RHEA:21000|UM-BBD_reactionID:r0006|MetaCyc:1.97.1.2-RXN|EC:1.97.1.2 molecular_function owl:Class GO:1900995 biolink:NamedThing ubiquinone-6 binding Binding to ubiquinone-6. Ubiquinone-6 is a ubiquinone compound having a (2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl substituent at position 2. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-14T02:49:15Z molecular_function owl:Class GO:0048039 biolink:NamedThing ubiquinone binding Binding to ubiquinone, a quinone derivative with a tail of isoprene units. tmpzr1t_l9r_go_relaxed.owl coenzyme Q binding|coenzyme Q6 binding molecular_function owl:Class GO:0021598 biolink:NamedThing abducens nerve morphogenesis The process in which the anatomical structure of the abducens nerve is generated and organized. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye. tmpzr1t_l9r_go_relaxed.owl CN VI development biological_process owl:Class GO:0047167 biolink:NamedThing 1-alkyl-2-acetylglycerol O-acyltransferase activity Catalysis of the reaction: 1-O-alkyl-2-acetyl-sn-glycerol + acyl-CoA = 1-O-alkyl-2-acetyl-3-acyl-sn-glycerol + CoA. tmpzr1t_l9r_go_relaxed.owl 1-hexadecyl-2-acetylglycerol acyltransferase activity|acyl-CoA:1-O-alkyl-2-acetyl-sn-glycerol O-acyltransferase activity EC:2.3.1.125|RHEA:21996|MetaCyc:2.3.1.125-RXN molecular_function owl:Class GO:0051938 biolink:NamedThing L-glutamate import The directed movement of L-glutamate, the L-enantiomer of the anion of 2-aminopentanedioic acid, into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl L-glutamate uptake biological_process owl:Class GO:1901964 biolink:NamedThing positive regulation of cell proliferation involved in outflow tract morphogenesis Any process that activates or increases the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell proliferation involved in outflow tract morphogenesis|upregulation of cell proliferation involved in outflow tract morphogenesis|up regulation of cell proliferation involved in outflow tract morphogenesis|activation of cell proliferation involved in outflow tract morphogenesis dph 2013-02-20T20:30:31Z biological_process owl:Class GO:0032016 biolink:NamedThing negative regulation of Ran protein signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of Ran protein signal transduction. tmpzr1t_l9r_go_relaxed.owl down-regulation of Ran protein signal transduction|downregulation of Ran protein signal transduction|inhibition of Ran protein signal transduction|down regulation of Ran protein signal transduction biological_process owl:Class GO:0047402 biolink:NamedThing protein-glucosylgalactosylhydroxylysine glucosidase activity Catalysis of the reaction: H2O + protein alpha-D-glucosyl-1,2-beta-D-galactosyl-L-hydroxylysine = protein beta-D-galactosyl-L-hydroxylysine + beta-D-glucose. The enzyme specifically hydrolyzes glucose from alpha-D-glucosyl- (1->2)-beta-D-galactosyl disaccharide units that are linked to hydroxylysine residues of collagen and collagen-like proteins. tmpzr1t_l9r_go_relaxed.owl protein-alpha-D-glucosyl-1,2-beta-D-galactosyl-L-hydroxylysine glucohydrolase activity|2-O-alpha-D-glucopyranosyl-5-O-alpha-D-galactopyranosylhydroxy-L-lysine glucohydrolase activity RHEA:11068|EC:3.2.1.107|MetaCyc:3.2.1.107-RXN molecular_function owl:Class GO:0016746 biolink:NamedThing acyltransferase activity Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring acyl groups https://github.com/geneontology/go-ontology/issues/20486 EC:2.3.-.-|Reactome:R-HSA-8858298|Reactome:R-HSA-193491|Reactome:R-HSA-6792572|Reactome:R-HSA-159431|Reactome:R-HSA-192312 GO:0008415 molecular_function owl:Class GO:0051070 biolink:NamedThing galactomannan biosynthetic process The chemical reactions and pathways resulting in the formation of galactomannan, a polysaccharide composed of D-galactosyl and D-mannosyl. The mannosyl units form the backbone structure (a linear main chain) with the D-galactosyl as single side units. tmpzr1t_l9r_go_relaxed.owl galactomannan biosynthesis|galactomannan synthesis|galactomannan formation|galactomannan anabolism biological_process owl:Class GO:0070403 biolink:NamedThing NAD+ binding Binding to the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. tmpzr1t_l9r_go_relaxed.owl NAD binding|NAD (oxidized) binding|oxidized NAD binding|oxidized nicotinamide adenine dinucleotide binding molecular_function owl:Class GO:0051287 biolink:NamedThing NAD binding Binding to nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl NAD+ or NADH binding|nicotinamide adenine dinucleotide binding|NAD or NADH binding GO:0051288 molecular_function owl:Class GO:0120259 biolink:NamedThing 7SK snRNP A ribonucleoprotein complex that contains the 7SK snRNA. The 7SK snRNP plays a central role in RNA polymerase II elongation control by regulating the availability of active P-TEFb. tmpzr1t_l9r_go_relaxed.owl snRNP 7SK https://github.com/geneontology/go-ontology/issues/19981 krc 2020-09-15T22:01:31Z cellular_component owl:Class GO:1901793 biolink:NamedThing 3-(3-hydroxyphenyl)propanoate metabolic process The chemical reactions and pathways involving 3-(3-hydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(3-hydroxyphenyl)propanoate metabolism yaf 2013-01-16T11:47:09Z biological_process owl:Class GO:0106030 biolink:NamedThing neuron projection fasciculation The collection of neuronal projections into a bundle of rods, known as a fascicle. tmpzr1t_l9r_go_relaxed.owl hjd 2017-06-26T19:43:23Z biological_process owl:Class GO:0043040 biolink:NamedThing tRNA aminoacylation for nonribosomal peptide biosynthetic process The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in nonribosomal peptide synthesis. tmpzr1t_l9r_go_relaxed.owl tRNA aminoacylation for nonribosomal peptide biosynthesis|tRNA aminoacylation for nonribosomal peptide formation|tRNA aminoacylation for nonribosomal peptide synthesis|tRNA aminoacylation for nonribosomal peptide anabolism biological_process owl:Class GO:0043039 biolink:NamedThing tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. tmpzr1t_l9r_go_relaxed.owl tRNA charging|aminoacyl-tRNA biosynthetic process|aminoacyl-tRNA biosynthesis biological_process owl:Class GO:0072695 biolink:NamedThing regulation of DNA recombination at telomere Any process that modulates the frequency, rate or extent of DNA recombination within the telomere. tmpzr1t_l9r_go_relaxed.owl regulation of telomeric recombination mah 2012-04-03T10:31:50Z biological_process owl:Class GO:1903509 biolink:NamedThing liposaccharide metabolic process The chemical reactions and pathways involving liposaccharide. tmpzr1t_l9r_go_relaxed.owl liposaccharide metabolism dph 2014-10-01T21:52:52Z biological_process owl:Class GO:0007564 biolink:NamedThing regulation of chitin-based cuticle tanning Any process that modulates the frequency, rate or extent of chitin-based cuticular tanning. tmpzr1t_l9r_go_relaxed.owl regulation of cuticle tanning|regulation of cuticle hardening biological_process owl:Class GO:0031884 biolink:NamedThing type 1 member 1 taste receptor binding Binding to a type 1 member 1 taste receptor. tmpzr1t_l9r_go_relaxed.owl type 1 member 1 taste receptor ligand molecular_function owl:Class GO:0031883 biolink:NamedThing taste receptor binding Binding to a taste receptor. tmpzr1t_l9r_go_relaxed.owl taste receptor ligand molecular_function owl:Class GO:0001039 biolink:NamedThing RNA polymerase III hybrid type promoter sequence-specific DNA binding Binding to a sequence of DNA that is a part of a hybrid type promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III hybrid type promoter DNA binding krc 2010-08-23T06:21:24Z GO:0001037 molecular_function owl:Class GO:0000992 biolink:NamedThing RNA polymerase III cis-regulatory region sequence-specific DNA binding Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. tmpzr1t_l9r_go_relaxed.owl krc 2010-08-11T03:49:28Z molecular_function owl:Class GO:0002300 biolink:NamedThing CD8-positive, alpha-beta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl CD8-positive, alpha-beta intraepithelial T-cell differentiation|CD8-positive, alpha-beta intraepithelial T cell development|CD8-positive, alpha-beta intraepithelial T-lymphocyte differentiation|CD8-positive, alpha-beta intraepithelial T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0005585 biolink:NamedThing collagen type II trimer A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Collagen_type_II cellular_component owl:Class GO:0097650 biolink:NamedThing B axonemal microtubule An incomplete microtubule containing 10 protofilaments that fuses with a complete microtubule called A tubule (containing 13 protofilaments) to form an axonemal outer doublet. tmpzr1t_l9r_go_relaxed.owl B tubule pr 2014-09-10T20:43:18Z cellular_component owl:Class GO:0007479 biolink:NamedThing leg disc proximal/distal pattern formation The establishment, maintenance and elaboration of the proximal/distal axis of the leg imaginal disc, a precursor to the adult leg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048480 biolink:NamedThing stigma development The process whose specific outcome is the progression of the stigma over time, from its formation to the mature structure. The stigma is the pollen-receptive surface of a carpel or group of fused carpels, usually sticky. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900752 biolink:NamedThing malonic acid transport The directed movement of a malonic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl HOOC-CH2-COOH transport|propanedioic acid transport|C3H4O4 transport|H2malo transport jl 2012-05-29T02:40:33Z biological_process owl:Class GO:0018910 biolink:NamedThing benzene metabolic process The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation. tmpzr1t_l9r_go_relaxed.owl benzene metabolism biological_process owl:Class GO:0031024 biolink:NamedThing interphase microtubule organizing center assembly The aggregation, arrangement and bonding together of a set of components, including gamma-tubulin and other proteins, to form an interphase microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl interphase microtubule organising center biosynthesis|interphase microtubule organizing centre assembly|interphase microtubule organizing center biogenesis|interphase microtubule organising center formation biological_process owl:Class GO:0070291 biolink:NamedThing N-acylethanolamine metabolic process The chemical reactions and pathways involving N-acylethanolamines. An N-acylethanolamine is an ethanolamine substituted at nitrogen by an acyl group. tmpzr1t_l9r_go_relaxed.owl NAE metabolic process|N-acylethanolamine metabolism|NAE metabolism biological_process owl:Class GO:0006363 biolink:NamedThing termination of RNA polymerase I transcription The process in which the synthesis of an RNA molecule by RNA polymerase I using a DNA template is completed. RNAP I termination requires binding of a terminator protein so specific sequences downstream of the transcription unit. tmpzr1t_l9r_go_relaxed.owl transcription termination from RNA polymerase I promoter|termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript|transcription termination from Pol I promoter|RNA polymerase I transcription termination factor activity|RNA polymerase I transcription termination krc 2011-08-15T04:07:43Z GO:0001185|GO:0019223 biological_process owl:Class GO:2000715 biolink:NamedThing regulation of maintenance of mitotic sister chromatid cohesion, arms Any process that modulates the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of mitotic sister chromatin cohesion along arms|regulation of maintenance of sister chromatin cohesion along arms at mitosis mah 2011-06-03T10:38:29Z biological_process owl:Class GO:0065010 biolink:NamedThing extracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a lipid bilayer membrane and occurring outside the cell. tmpzr1t_l9r_go_relaxed.owl extracellular membrane-enclosed organelle cellular_component owl:Class GO:0071382 biolink:NamedThing cellular response to prostaglandin I stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin I stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:45:10Z biological_process owl:Class GO:0010174 biolink:NamedThing nucleoside transmembrane transporter activity, against a concentration gradient Enables the transfer of a nucleoside, from one side of a membrane to the other, up a concentration gradient. tmpzr1t_l9r_go_relaxed.owl concentrative nucleoside transporter activity molecular_function owl:Class GO:0033473 biolink:NamedThing indoleacetic acid conjugate metabolic process The chemical reactions and pathways involving any indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid conjugate metabolism|indole acetic acid conjugate metabolic process|indole acetic acid conjugate metabolism|IAA conjugate metabolic process biological_process owl:Class GO:0097429 biolink:NamedThing amino acid ligation activity by nonribosomal peptide synthase Catalysis of the ligation of an amino acid to another amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate, carried out by a nonribosomal peptide synthase. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-16T12:34:22Z molecular_function owl:Class GO:0032789 biolink:NamedThing unsaturated monocarboxylic acid metabolic process The chemical reactions and pathways involving unsaturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and one or more unsaturated C-C bonds. tmpzr1t_l9r_go_relaxed.owl unsaturated monocarboxylic acid metabolism|unsaturated monocarboxylate metabolic process biological_process owl:Class GO:0046586 biolink:NamedThing regulation of calcium-dependent cell-cell adhesion Any process that modulates the frequency, rate or extent of the attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904302 biolink:NamedThing negative regulation of maternal process involved in parturition Any process that stops, prevents or reduces the frequency, rate or extent of maternal process involved in parturition. tmpzr1t_l9r_go_relaxed.owl downregulation of maternal process involved in parturition|down regulation of maternal process involved in parturition|inhibition of maternal process involved in parturition|down-regulation of maternal process involved in parturition sl 2015-06-09T23:01:38Z biological_process owl:Class GO:0019798 biolink:NamedThing procollagen-proline dioxygenase activity Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0075259 biolink:NamedThing spore-bearing structure development The process whose specific outcome is the progression of a spore-bearing structure over time, from its formation to the mature structure. A spore-bearing structure is an anatomical structure that produces new spores. tmpzr1t_l9r_go_relaxed.owl fruiting structure development|spore-bearing organ development|sporangium development|sporophore development biological_process owl:Class GO:0046839 biolink:NamedThing phospholipid dephosphorylation The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902317 biolink:NamedThing nuclear DNA replication termination Any DNA replication termination that is involved in nuclear cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication termination involved in DNA replication involved in S-phase|DNA replication termination involved in DNA replication involved in S phase|DNA replication termination involved in nuclear cell cycle DNA replication|DNA replication termination involved in DNA replication during S phase jl 2013-07-23T14:00:17Z biological_process owl:Class GO:0031446 biolink:NamedThing regulation of fast-twitch skeletal muscle fiber contraction Any process that modulates the frequency, rate or extent of fast-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl regulation of fast-twitch skeletal muscle contraction biological_process owl:Class GO:0010691 biolink:NamedThing negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010688 biolink:NamedThing negative regulation of ribosomal protein gene transcription by RNA polymerase II Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter biological_process owl:Class GO:1902807 biolink:NamedThing negative regulation of cell cycle G1/S phase transition Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl down-regulation of cell cycle G1/S phase transition|inhibition of cell cycle G1/S phase transition|down regulation of cell cycle G1/S phase transition|downregulation of cell cycle G1/S phase transition jl 2014-03-26T16:36:20Z biological_process owl:Class GO:0022032 biolink:NamedThing telencephalon oligodendrocyte cell migration The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061361 biolink:NamedThing positive regulation of maintenance of bipolar cell polarity regulating cell shape Any process that increases the frequency, rate or extent of maintenance of bipolar cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-13T09:00:59Z biological_process owl:Class GO:0048769 biolink:NamedThing sarcomerogenesis The process in which sarcomeres are added in series within a fiber. tmpzr1t_l9r_go_relaxed.owl myofibril production biological_process owl:Class GO:0060423 biolink:NamedThing foregut regionalization The pattern specification process that results in the spatial subdivision of an axis or axes along the foregut to define an area or volume in which specific patterns of cell differentiation will take place. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004000 biolink:NamedThing adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3. tmpzr1t_l9r_go_relaxed.owl adenosine aminohydrolase activity|adenosine deaminase reaction Reactome:R-HSA-2161195|MetaCyc:ADENODEAMIN-RXN|RHEA:24408|Reactome:R-HSA-74241|Reactome:R-HSA-2161187|Reactome:R-HSA-5693346|EC:3.5.4.4 molecular_function owl:Class GO:0010341 biolink:NamedThing gibberellin carboxyl-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a gibberellin = S-adenosyl-L-homocysteine + a gibberellin methyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047743 biolink:NamedThing chlordecone reductase activity Catalysis of the reaction: chlordecone alcohol + NADP(+) = chlordecone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl CDR activity|chlordecone-alcohol:NADP+ 2-oxidoreductase activity RHEA:14401|EC:1.1.1.225|MetaCyc:CHLORDECONE-REDUCTASE-RXN|KEGG_REACTION:R03716 molecular_function owl:Class GO:0051784 biolink:NamedThing negative regulation of nuclear division Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. tmpzr1t_l9r_go_relaxed.owl down-regulation of nuclear division|down regulation of nuclear division|inhibition of nuclear division|downregulation of nuclear division biological_process owl:Class GO:0031853 biolink:NamedThing nociceptin receptor binding Binding to a nociceptin receptor. tmpzr1t_l9r_go_relaxed.owl nociceptin receptor ligand molecular_function owl:Class GO:0071747 biolink:NamedThing IgA B cell receptor complex An IgA immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl surface IgA2|surface IgA|membrane-bound IgA1|surface IgA1|membrane-bound IgA|membrane-bound IgA2 Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0001400 biolink:NamedThing mating projection base The region where the mating projection meets the bulk of the cell, in unicellular fungi exposed to mating pheromone. tmpzr1t_l9r_go_relaxed.owl conjugation tube base|base of shmoo tip cellular_component owl:Class GO:0043939 biolink:NamedThing negative regulation of sporulation Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation, the process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045642 biolink:NamedThing positive regulation of basophil differentiation Any process that activates or increases the frequency, rate or extent of basophil differentiation. tmpzr1t_l9r_go_relaxed.owl activation of basophil differentiation|up-regulation of basophil differentiation|upregulation of basophil differentiation|up regulation of basophil differentiation|stimulation of basophil differentiation biological_process owl:Class GO:0043544 biolink:NamedThing lipoamide binding Binding to lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043441 biolink:NamedThing acetoacetic acid biosynthetic process The chemical reactions and pathways resulting in the formation of acetoacetic acid, a beta-keto acid of the keto acid group, empirical formula is C4H6O3 or CH3COCH2COOH. tmpzr1t_l9r_go_relaxed.owl acetoacetic acid anabolism|acetoacetic acid synthesis|acetoacetic acid biosynthesis|acetoacetic acid formation biological_process owl:Class GO:0051790 biolink:NamedThing short-chain fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short chain fatty acid biosynthetic process|short-chain fatty acid anabolism|short-chain fatty acid formation|short-chain fatty acid synthesis|short-chain fatty acid biosynthesis|short chain fatty acid biosynthesis biological_process owl:Class GO:0019372 biolink:NamedThing lipoxygenase pathway The chemical reactions and pathways by which an unsaturated fatty acid (such as arachidonic acid or linolenic acid) is converted to other compounds, and in which the first step is hydroperoxide formation catalyzed by lipoxygenase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000065 biolink:NamedThing negative regulation of cortisol biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of cortisol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cortisol formation|negative regulation of cortisol biosynthesis|negative regulation of cortisol synthesis|negative regulation of cortisol anabolism jl 2010-08-20T01:51:23Z biological_process owl:Class GO:0098745 biolink:NamedThing Dcp1-Dcp2 complex A protein complex consisting of a Dcp1 regulatory subunit and a Dcp2 catalytic subunit that has mRNA cap binding activity and is involved in decapping of nuclear-transcribed mRNA. tmpzr1t_l9r_go_relaxed.owl Additional components may be present, for example in ascomycetes this complex includes an additional regulatory subunit, Edc1. cellular_component owl:Class GO:0045434 biolink:NamedThing negative regulation of female receptivity, post-mating Any process that stops, prevents or reduces the receptiveness of a female to male advances subsequent to mating. tmpzr1t_l9r_go_relaxed.owl inhibition of female receptivity, post-mating|down-regulation of female receptivity, post-mating|downregulation of female receptivity, post-mating|down regulation of female receptivity, post-mating biological_process owl:Class GO:0007621 biolink:NamedThing negative regulation of female receptivity Any process that stops, prevents or reduces the receptiveness of a female to male advances. tmpzr1t_l9r_go_relaxed.owl down-regulation of female receptivity|inhibition of female receptivity|down regulation of female receptivity|downregulation of female receptivity biological_process owl:Class GO:0061721 biolink:NamedThing 6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) The chemical reactions and pathways resulting in the breakdown of 6-sulfoquinovose(1-) resulting in the formation of glycerone phosphate (DHAP) and 3-sulfopropanediol(1-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-7446 dph 2015-07-01T09:20:08Z biological_process owl:Class GO:0001095 biolink:NamedThing TFIIE-class transcription factor complex binding Binding to a general RNA polymerase II transcription factor belonging to the TFIIE complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl TFIIE-class transcription factor binding krc 2010-10-28T02:49:20Z molecular_function owl:Class GO:0099083 biolink:NamedThing retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission Modulation of synaptic transmittion by cell-cell signaling across the synaptic cleft from postsynapse to presynapse, mediated by a neuropeptide. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0098984 biolink:NamedThing neuron to neuron synapse A synapse in which pre and post-synaptic cells are neurons. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903947 biolink:NamedThing positive regulation of ventricular cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of ventricular cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl activation of ventricular cardiac muscle cell action potential|up regulation of ventricular cardiac muscle cell action potential|upregulation of ventricular cardiac muscle cell action potential|up-regulation of ventricular cardiac muscle cell action potential nc 2015-02-20T14:32:04Z biological_process owl:Class GO:1902627 biolink:NamedThing regulation of assembly of large subunit precursor of preribosome Any process that modulates the frequency, rate or extent of assembly of a large subunit precursor of preribosome. tmpzr1t_l9r_go_relaxed.owl regulation of preribosome, large subunit precursor formation|regulation of 66S preribosome formation|regulation of 66S preribosome assembly tb 2014-01-16T22:11:45Z biological_process owl:Class GO:0035232 biolink:NamedThing germ cell attraction The directed movement of a germ cell from their site of production to the gonad, through the attraction of cells towards their target. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070218 biolink:NamedThing sulfide ion homeostasis Any process involved in the maintenance of an internal steady state of sulfide ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl sulfide production|sulphide generation|sulphide production|sulfide homeostasis|sulphide ion homeostasis|sulphide homeostasis|sulfide generation biological_process owl:Class GO:0102934 biolink:NamedThing costunolide synthase activity Catalysis of the reaction: germacra-1(10),4,11(13)-trien-12-oate + O2 + NADPH + 2 H+ = costunolide + 2 H2O + NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.150|RHEA:28230|MetaCyc:RXN-8971 molecular_function owl:Class GO:0052777 biolink:NamedThing diacetylchitobiose catabolic process The chemical reactions and pathways resulting in the breakdown of diacetylchitobiose into simpler products. tmpzr1t_l9r_go_relaxed.owl diacetylchitobiose catabolism biological_process owl:Class GO:0018264 biolink:NamedThing isopeptide cross-linking via N-(L-isoaspartyl)-glycine The formation of an isopeptide cross-link between peptidyl-asparagine and peptidyl-glycine to produce N-(L-isoaspartyl)-glycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0126 biological_process owl:Class GO:0061104 biolink:NamedThing adrenal chromaffin cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an adrenal chromaffin cell. An adrenal chromaffin cell is a neuroendocrine cell that stores epinephrine secretory vesicles. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-29T08:27:53Z biological_process owl:Class GO:0080043 biolink:NamedThing quercetin 3-O-glucosyltransferase activity Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035188 biolink:NamedThing hatching The emergence of an immature organism from a protective structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062176 biolink:NamedThing R-loop disassembly A DNA metabolic process that results in the disassembly of R-loops. R-loops are three-stranded nucleic acid structures consisitng of an RNA:DNA heteroduplex and a looped-out non-template strand. Aberrant formation and persistence of R-loops block transcription elongation and cause DNA damage. Mechanisms that resolve R-loops are essential for genome stability. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-19T12:47:04Z biological_process owl:Class GO:1904337 biolink:NamedThing positive regulation of ductus arteriosus closure Any process that activates or increases the frequency, rate or extent of ductus arteriosus closure. tmpzr1t_l9r_go_relaxed.owl up-regulation of ductus arteriosus closure|activation of ductus arteriosus closure|upregulation of ductus arteriosus closure|up regulation of ductus arteriosus closure sl 2015-06-11T17:45:27Z biological_process owl:Class GO:0045617 biolink:NamedThing negative regulation of keratinocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of keratinocyte differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of keratinocyte differentiation|downregulation of keratinocyte differentiation|down regulation of keratinocyte differentiation|inhibition of keratinocyte differentiation biological_process owl:Class GO:1905605 biolink:NamedThing positive regulation of blood-brain barrier permeability Any process that increases blood-brain barrier permeability, the quality of the blood-brain barrier that allows for a controlled passage of substances (e.g. macromolecules, small molecules, ions) into and out of the brain. tmpzr1t_l9r_go_relaxed.owl upregulation of BBB permeability|activation of maintenance of permeability of blood-brain barrier|up-regulation of BBB permeability|upregulation of blood/brain barrier permeability|upregulation of blood-brain barrier permeability|positive regulation of BBB permeability|up-regulation of blood/brain barrier permeability|positive regulation of blood/brain barrier permeability|activation of maintenance of permeability of BBB|up-regulation of blood-brain barrier permeability als 2016-10-26T13:18:32Z biological_process owl:Class GO:1905603 biolink:NamedThing regulation of blood-brain barrier permeability Any process that modulates blood-brain barrier permeability, the quality of the blood-brain barrier that allows for a controlled passage of substances (e.g. macromolecules, small molecules, ions) into and out of the brain. tmpzr1t_l9r_go_relaxed.owl regulation of blood/brain barrier permeability|regulation of BBB permeability als 2016-10-26T13:18:16Z biological_process owl:Class GO:0055001 biolink:NamedThing muscle cell development The process whose specific outcome is the progression of a muscle cell over time, from its formation to the mature structure. Muscle cell development does not include the steps involved in committing an unspecified cell to the muscle cell fate. tmpzr1t_l9r_go_relaxed.owl muscle fiber development|myofibre development|myofiber development|muscle fibre development GO:0048747 biological_process owl:Class GO:2000796 biolink:NamedThing Notch signaling pathway involved in negative regulation of venous endothelial cell fate commitment Any Notch signaling pathway that is involved in negative regulation of venous endothelial cell fate commitment. tmpzr1t_l9r_go_relaxed.owl N signaling pathway involved in negative regulation of venous endothelial cell fate commitment|Notch-receptor signalling pathway involved in negative regulation of venous endothelial cell fate commitment|Notch-receptor signaling pathway involved in negative regulation of venous endothelial cell fate commitment|Notch receptor signaling pathway involved in negative regulation of venous endothelial cell fate commitment|Notch signalling pathway involved in negative regulation of venous endothelial cell fate commitment|Notch receptor signalling pathway involved in negative regulation of venous endothelial cell fate commitment bf 2011-06-27T09:07:42Z biological_process owl:Class GO:0019441 biolink:NamedThing tryptophan catabolic process to kynurenine The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine. tmpzr1t_l9r_go_relaxed.owl tryptophan degradation to kynurenine|tryptophan breakdown to kynurenine MetaCyc:TRPKYNCAT-PWY biological_process owl:Class GO:0030760 biolink:NamedThing pyridine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + pyridine = N-methylpyridinium + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:pyridine N-methyltransferase activity|pyridine methyltransferase activity Reactome:R-HSA-175987|EC:2.1.1.87|MetaCyc:PYRIDINE-N-METHYLTRANSFERASE-RXN|KEGG_REACTION:R02862|RHEA:16893 molecular_function owl:Class GO:0002178 biolink:NamedThing palmitoyltransferase complex A protein complex with palmitoyltransferase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2010-12-03T10:49:17Z cellular_component owl:Class GO:0035575 biolink:NamedThing histone H4-methyl-lysine-20 demethylase activity Catalysis of the removal of the methyl group from a modified lysine residue at position 20 of the histone H4 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H4K20me demethylase activity|histone demethylase activity (H4-K20 specific) https://github.com/geneontology/go-ontology/issues/21089 Reactome:R-HSA-2172678 bf 2010-08-13T10:51:13Z molecular_function owl:Class GO:0070786 biolink:NamedThing positive regulation of growth of unicellular organism as a thread of attached cells Any process that activates or increases the frequency, rate or extent of the process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-07T02:39:48Z biological_process owl:Class GO:0010350 biolink:NamedThing cellular response to magnesium starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of magnesium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901861 biolink:NamedThing regulation of muscle tissue development Any process that modulates the frequency, rate or extent of muscle tissue development. tmpzr1t_l9r_go_relaxed.owl yaf 2013-02-01T10:30:47Z biological_process owl:Class GO:0019265 biolink:NamedThing glycine biosynthetic process, by transamination of glyoxylate The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate. tmpzr1t_l9r_go_relaxed.owl glycine synthesis, by transamination of glyoxylate|glycine formation, by transamination of glyoxylate|glycine anabolism, by transamination of glyoxylate biological_process owl:Class GO:1900645 biolink:NamedThing positive regulation of chanoclavine-I biosynthetic process Any process that activates or increases the frequency, rate or extent of chanoclavine-I biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of chanoclavine-I anabolism|up-regulation of chanoclavine-I anabolism|up-regulation of chanoclavine-I synthesis|up-regulation of chanoclavine-I biosynthetic process|up regulation of chanoclavine-I biosynthesis|positive regulation of chanoclavine-I biosynthesis|upregulation of chanoclavine-I synthesis|up regulation of chanoclavine-I synthesis|activation of chanoclavine-I formation|upregulation of chanoclavine-I biosynthesis|up regulation of chanoclavine-I biosynthetic process|upregulation of chanoclavine-I biosynthetic process|activation of chanoclavine-I biosynthesis|up-regulation of chanoclavine-I formation|positive regulation of chanoclavine-I formation|activation of chanoclavine-I synthesis|activation of chanoclavine-I anabolism|positive regulation of chanoclavine-I synthesis|up regulation of chanoclavine-I anabolism|up-regulation of chanoclavine-I biosynthesis|activation of chanoclavine-I biosynthetic process|up regulation of chanoclavine-I formation|upregulation of chanoclavine-I anabolism|upregulation of chanoclavine-I formation di 2012-05-22T04:03:38Z biological_process owl:Class GO:0071488 biolink:NamedThing cellular response to very low light intensity stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:13:40Z biological_process owl:Class GO:0071484 biolink:NamedThing cellular response to light intensity Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:11:03Z biological_process owl:Class GO:1905141 biolink:NamedThing negative regulation of apical ectodermal ridge formation Any process that stops, prevents or reduces the frequency, rate or extent of apical ectodermal ridge formation. tmpzr1t_l9r_go_relaxed.owl inhibition of AER formation|downregulation of apical ectodermal ridge formation|inhibition of crista ectodermalis apicalis formation|negative regulation of AER formation|inhibition of apical epidermal ridge formation|down regulation of apical epidermal ridge formation|down-regulation of crista ectodermalis apicalis formation|downregulation of crista ectodermalis apicalis formation|down-regulation of apical epidermal ridge formation|negative regulation of apical epidermal ridge formation|down regulation of apical ectodermal ridge formation|downregulation of apical epidermal ridge formation|down-regulation of AER formation|downregulation of AER formation|down-regulation of apical ectodermal ridge formation|inhibition of apical ectodermal ridge formation|down regulation of AER formation|down regulation of crista ectodermalis apicalis formation|negative regulation of crista ectodermalis apicalis formation dph 2016-04-13T12:16:48Z biological_process owl:Class GO:0140245 biolink:NamedThing regulation of translation at postsynapse Any process that regulates translation occurring at the postsynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T09:38:54Z biological_process owl:Class GO:0072705 biolink:NamedThing cellular response to mercaptoethanol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercaptoethanol stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 2-sulfanylethanol mah 2012-04-11T03:27:40Z biological_process owl:Class GO:0098855 biolink:NamedThing HCN channel complex A cation ion channel with a preference for K+ over Na+ ions, which is activated by membrane hyperpolarization, and consists of a tetramer of HCN family members. Some members of this family (HCN1, HCN2 and HCN4) are also activated when cAMP binds to their cyclic nucleotide binding domain (CNBD). Channel complexes of this family play an important role in the control of pacemaker activity in the heart. tmpzr1t_l9r_go_relaxed.owl potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 tetramer|K/Na hyperpolarization-activated cyclic nucleotide-gated channel 1 complex|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel complex|potassium/sodium hyperpolarization-activated channel 3 complex|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 tetramer|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 complex|HCN1 channel complex|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 complex|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 complex|K/Na hyperpolarization-activated cyclic nucleotide-gated channel 4 complex|K/Na hyperpolarization-activated cyclic nucleotide-gated channel complex|HCN3 channel complex|HCN2 channel complex|K/Na hyperpolarization-activated channel 3 complex|HCN4 channel complex|K/Na hyperpolarization-activated cyclic nucleotide-gated channel 2 complex GO:1990746|GO:1990759 cellular_component owl:Class GO:0030510 biolink:NamedThing regulation of BMP signaling pathway Any process that modulates the frequency, rate or extent of the activity of any BMP receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of decapentaplegic receptor signaling pathway|regulation of decapentaplegic signaling pathway|regulation of bone morphogenetic protein signalling pathway|regulation of decapentaplegic receptor signalling pathway|regulation of BMP receptor signaling pathway|regulation of bone morphogenetic protein signaling pathway|regulation of BMP signalling pathway tb 2009-11-13T10:49:14Z GO:0090097 biological_process owl:Class GO:0035845 biolink:NamedThing photoreceptor cell outer segment organization A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of the outer segment of a photoreceptor cell, a sensory cell that reacts to the presence of light. The outer segment of the photoreceptor cell contains the light-absorbing materials. tmpzr1t_l9r_go_relaxed.owl photoreceptor outer segment organization|photoreceptor cell outer segment organisation bf 2011-05-10T10:44:09Z biological_process owl:Class GO:0021595 biolink:NamedThing rhombomere structural organization The process that contributes to the act of creating the structural organization of the rhombomere structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. tmpzr1t_l9r_go_relaxed.owl rhombomere structural organisation biological_process owl:Class GO:0072680 biolink:NamedThing extracellular matrix-dependent thymocyte migration The movement of a thymocyte through distinct intrathymic niches (e.g. medulla, cortex), where it receives a unique set of developmental cues required for T-cell development, dependent on extracellular matrix components including fibronectin, collagen and laminin. tmpzr1t_l9r_go_relaxed.owl extracellular matrix-dependent immature T-lymphocyte migration|extracellular matrix-dependent immature T-cell migration|extracellular matrix-dependent thymic lymphocyte migration|extracellular matrix-dependent immature T cell migration|extracellular matrix-dependent immature T lymphocyte migration mah 2011-02-22T03:49:57Z biological_process owl:Class GO:0018689 biolink:NamedThing naphthalene disulfonate 1,2-dioxygenase activity Catalysis of the reaction: (1/2)-unsubstituted naphthalenoid-(2/1)-sulfonate + 2 H+ + 2 e- + O2 = 1,2-dihydroxynaphthalene derivative + HSO3(-). Substrates include naphthalene-1,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate), naphthalene-1-sulfonate (forms 1,2-dihydroxynaphthalene), naphthalene-2,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate) and naphthalene-2-sulfonate (forms 1,2-dihydroxynaphthalene). tmpzr1t_l9r_go_relaxed.owl naphthalene disulphonate 1,2-dioxygenase activity UM-BBD_enzymeID:e0249 molecular_function owl:Class GO:0042124 biolink:NamedThing 1,3-beta-glucanosyltransferase activity Catalysis of the splitting and linkage of (1->3)-beta-D-glucan molecules, resulting in (1->3)-beta-D-glucan chain elongation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042123 biolink:NamedThing glucanosyltransferase activity Catalysis of the splitting and linkage of glucan molecules, resulting in glucan chain elongation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034625 biolink:NamedThing fatty acid elongation, monounsaturated fatty acid Elongation of a fatty acid chain into which one C-C double bond has been introduced. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019368 biolink:NamedThing fatty acid elongation, unsaturated fatty acid Elongation of a fatty acid chain into which one or more C-C double bonds have been introduced. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY0-862 biological_process owl:Class GO:0070475 biolink:NamedThing rRNA base methylation The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002843 biolink:NamedThing regulation of tolerance induction to tumor cell Any process that modulates the frequency, rate, or extent of tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl regulation of tolerance induction to tumour cell biological_process owl:Class GO:1905005 biolink:NamedThing regulation of epithelial to mesenchymal transition involved in endocardial cushion formation Any process that modulates the frequency, rate or extent of epithelial to mesenchymal transition involved in endocardial cushion formation. tmpzr1t_l9r_go_relaxed.owl rl 2016-03-01T15:38:39Z biological_process owl:Class GO:0035716 biolink:NamedThing chemokine (C-C motif) ligand 12 binding Binding to chemokine (C-C motif) ligand 12. tmpzr1t_l9r_go_relaxed.owl CCL12 binding bf 2011-03-03T04:25:01Z molecular_function owl:Class GO:0090496 biolink:NamedThing mesenchyme migration involved in limb bud formation The migration of mesenchymal tissue that contributes to the formation of a limb bud. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-17T12:04:20Z biological_process owl:Class GO:0090131 biolink:NamedThing mesenchyme migration The process in which the population of cells that make up a mesenchyme undergo directed movement. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:15:17Z biological_process owl:Class GO:0009723 biolink:NamedThing response to ethylene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. tmpzr1t_l9r_go_relaxed.owl response to ethene stimulus|response to ethylene stimulus biological_process owl:Class GO:1902673 biolink:NamedThing left posteriolateral basal body Any ciliary basal body that is part of a left posteriolateral flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl cilial basal body of left posteriolateral cilium|microtubule basal body of left posteriolateral cilium|left posteriolateral flagellum ciliary basal body|cilial basal body of left posteriolateral flagellum|ciliary basal body of left posterolateral cilium|cilium basal body of left posteriolateral cilium|cilium basal body of left posterolateral cilium|microtubule basal body of left posterolateral cilium|ciliary basal body of left posteriolateral cilium|microtubule basal body of left posteriolateral flagellum|cilial basal body of left posterolateral flagellum|cilial basal body of left posterolateral cilium|microtubule basal body of left posterolateral flagellum|ciliary basal body of left posterolateral flagellum|cilium basal body of left posterolateral flagellum|ciliary basal body of left posteriolateral flagellum|cilium basal body of left posteriolateral flagellum Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:49:25Z cellular_component owl:Class GO:0043698 biolink:NamedThing iridosome A tissue-specific, membrane-bounded cytoplasmic organelle within which purines crystalize in reflective stacks. Iridosomes are synthesized in iridophore cells and are silver, gold or iridescent in appearance. tmpzr1t_l9r_go_relaxed.owl reflecting platelet cellular_component owl:Class GO:1900969 biolink:NamedThing negative regulation of sarcinapterin metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of sarcinapterin metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of sarcinapterin metabolism|down-regulation of sarcinapterin metabolic process|downregulation of sarcinapterin metabolic process|downregulation of sarcinapterin metabolism|down-regulation of sarcinapterin metabolism|inhibition of sarcinapterin metabolism|negative regulation of sarcinapterin metabolism|inhibition of sarcinapterin metabolic process|down regulation of sarcinapterin metabolic process tt 2012-06-14T03:58:35Z biological_process owl:Class GO:0035915 biolink:NamedThing pore formation in membrane of other organism The aggregation, arrangement and bonding together of a set of components by an organism to form a pore complex in a membrane of another organism. tmpzr1t_l9r_go_relaxed.owl pore complex assembly in other organism|pore biosynthesis in other organism|pore-forming toxin activity|pore complex biogenesis in other organism|pore formation in other organism bf 2011-07-01T11:45:01Z biological_process owl:Class GO:0051673 biolink:NamedThing membrane disruption in other organism The disruption of the membranes of another organism, leading to damage to its cells and possibly death of that organism. tmpzr1t_l9r_go_relaxed.owl membrane disruption in another organism|cytolysis, by membrane disruption, in other organism biological_process owl:Class GO:2000532 biolink:NamedThing regulation of renal albumin absorption Any process that modulates the frequency, rate or extent of renal albumin absorption. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-24T03:28:06Z biological_process owl:Class GO:0008868 biolink:NamedThing galactitol-1-phosphate 5-dehydrogenase activity Catalysis of the reaction: galactitol-1-phosphate + NAD+ = D-tagatose 6-phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl galactitol-1-phosphate:NAD+ oxidoreductase activity MetaCyc:1.1.1.251-RXN|EC:1.1.1.251|RHEA:15137 molecular_function owl:Class GO:0034898 biolink:NamedThing hexadecyltrimethylammonium chloride monooxygenase activity Catalysis of the reaction: hexadecyltrimethylammonium chloride + NAD(P)H + H+ + O2 = trimethylamine + hexadecanal + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.13.12.-|UM-BBD_reactionID:r1373 molecular_function owl:Class GO:0002142 biolink:NamedThing stereocilia ankle link complex A complex of proteins that connect growing stereocilia in developing cochlear hair cells, composed of Vlgr1, usherin, vezatin, and whirlin. tmpzr1t_l9r_go_relaxed.owl hjd 2009-05-06T10:33:57Z cellular_component owl:Class GO:0090025 biolink:NamedThing regulation of monocyte chemotaxis Any process that modulates the frequency, rate, or extent of monocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:17:03Z biological_process owl:Class GO:0005704 biolink:NamedThing polytene chromosome band A stretch of densely packed chromatin along the polytene chromosome, visible as a morphologically distinct band. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072701 biolink:NamedThing cellular response to bismuth Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bismuth (Bi) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to bismuth ion mah 2012-04-11T02:56:42Z biological_process owl:Class GO:0072700 biolink:NamedThing response to bismuth Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bismuth (Bi) stimulus. tmpzr1t_l9r_go_relaxed.owl response to bismuth ion mah 2012-04-11T02:56:35Z biological_process owl:Class GO:0019431 biolink:NamedThing acetyl-CoA biosynthetic process from ethanol The chemical reactions and pathways resulting in the formation of acetyl-CoA from ethanol via acetaldehyde. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA anabolism from ethanol|acetyl-CoA synthesis from ethanol|acetyl-CoA formation from ethanol MetaCyc:ETOH-ACETYLCOA-ANA-PWY biological_process owl:Class GO:0051547 biolink:NamedThing regulation of keratinocyte migration Any process that modulates the frequency, rate or extent of keratinocyte migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060444 biolink:NamedThing branching involved in mammary gland duct morphogenesis The process in which the branching structure of the mammary gland duct is generated and organized. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. tmpzr1t_l9r_go_relaxed.owl mammary gland branching morphogenesis biological_process owl:Class GO:1903854 biolink:NamedThing negative regulation of stress response to copper ion Any process that stops, prevents or reduces the frequency, rate or extent of stress response to copper ion. tmpzr1t_l9r_go_relaxed.owl inhibition of response to copper toxicity|inhibition of response to copper ion stress|down regulation of response to copper toxicity|down-regulation of stress response to copper ion|downregulation of stress response to copper ion|down-regulation of response to copper ion stress|downregulation of response to copper toxicity|down regulation of stress response to copper ion|inhibition of stress response to copper ion|negative regulation of response to copper ion stress|negative regulation of response to copper toxicity|downregulation of response to copper ion stress|down-regulation of response to copper toxicity|down regulation of response to copper ion stress kmv 2015-01-29T20:15:33Z biological_process owl:Class GO:0030973 biolink:NamedThing molybdate ion binding Binding to a molybdate ion (MoO4 2-). tmpzr1t_l9r_go_relaxed.owl MoO4 ion binding molecular_function owl:Class GO:1903711 biolink:NamedThing spermidine transmembrane transport The process in which spermidine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-06T08:12:44Z biological_process owl:Class GO:0047220 biolink:NamedThing galactosylxylosylprotein 3-beta-galactosyltransferase activity Catalysis of the reaction: 4-beta-D-galactosyl-O-beta-D-xylosylprotein + UDP-galactose = 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein + UDP. tmpzr1t_l9r_go_relaxed.owl galactosyltransferase II activity|uridine diphosphogalactose-galactosylxylose galactosyltransferase activity|UDPgalactose:4-beta-D-galactosyl-O-beta-D-xylosylprotein 3-beta-D-galactosyltransferase activity|UDP-galactose:4-beta-D-galactosyl-O-beta-D-xylosylprotein 3-beta-D-galactosyltransferase activity EC:2.4.1.134|RHEA:11780|MetaCyc:2.4.1.134-RXN|Reactome:R-HSA-4420365|Reactome:R-HSA-1889978 molecular_function owl:Class GO:0007371 biolink:NamedThing ventral midline determination The regionalization process in which the area where the ventral midline will form is specified. tmpzr1t_l9r_go_relaxed.owl determination of posterior border of ventral midline|determination of anterior border of ventral midline GO:0007372|GO:0007373 biological_process owl:Class GO:1901782 biolink:NamedThing p-cumate catabolic process The chemical reactions and pathways resulting in the breakdown of p-cumate. tmpzr1t_l9r_go_relaxed.owl p-cumate breakdown|p-cumate catabolism|p-cumate degradation yaf 2013-01-16T10:40:32Z biological_process owl:Class GO:0034303 biolink:NamedThing myxospore formation The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044570 biolink:NamedThing starch utilization system complex A bacterial cell envelope-associated multiprotein system, which binds and degrades starch. tmpzr1t_l9r_go_relaxed.owl Sus complex jl 2012-04-18T02:46:24Z cellular_component owl:Class GO:1901521 biolink:NamedThing aspyridone B biosynthetic process The chemical reactions and pathways resulting in the formation of aspyridone B. tmpzr1t_l9r_go_relaxed.owl aspyridone B synthesis|aspyridone B biosynthesis|aspyridone B formation|aspyridone B anabolism di 2012-10-18T18:31:52Z biological_process owl:Class GO:1901519 biolink:NamedThing aspyridone B metabolic process The chemical reactions and pathways involving aspyridone B. tmpzr1t_l9r_go_relaxed.owl aspyridone B metabolism di 2012-10-18T18:31:40Z biological_process owl:Class GO:0008554 biolink:NamedThing P-type sodium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) -> ADP + phosphate + Na+(out); by a phosphorylative mechanism. tmpzr1t_l9r_go_relaxed.owl sodium-exporting ATPase activity, phosphorylative mechanism|sodium transport ATPase activity|Na(+)-exporting ATPase activity|Na+-transporting ATPase activity|sodium-translocating P-type ATPase activity|Na+-exporting ATPase activity|sodium-exporting ATPase activity|Na(+)-transporting ATPase activity|sodium transmembrane transporter activity, phosphorylative mechanism|sodium exporting ATPase activity, phosphorylative mechanism https://github.com/geneontology/go-ontology/issues/21796 EC:7.2.2.3|RHEA:14633|MetaCyc:3.6.3.7-RXN Note that RHEA:14633 represents both the ABC and the P-type sodium transporters. molecular_function owl:Class GO:0051798 biolink:NamedThing positive regulation of hair follicle development Any process that activates or increases the frequency, rate or extent of hair follicle development. tmpzr1t_l9r_go_relaxed.owl up-regulation of hair follicle development|up regulation of hair follicle development|stimulation of hair follicle development|activation of hair follicle development|upregulation of hair follicle development biological_process owl:Class GO:1900722 biolink:NamedThing regulation of protein adenylylation Any process that modulates the frequency, rate or extent of protein adenylylation. tmpzr1t_l9r_go_relaxed.owl regulation of protein adenylation|regulation of protein amino acid adenylylation|regulation of protein AMPylation jl 2012-05-24T03:15:44Z biological_process owl:Class GO:0099634 biolink:NamedThing postsynaptic specialization membrane The membrane component of the postsynaptic specialization. This is the region of the postsynaptic membrane in which the population of neurotransmitter receptors involved in synaptic transmission are concentrated. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015325 biolink:NamedThing acetyl-CoA:CoA antiporter activity Catalysis of the reaction: acetyl-CoA(out) + CoA(in) = acetyl-CoA(in) + CoA(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008521 biolink:NamedThing acetyl-CoA transmembrane transporter activity Enables the transfer of acetyl-CoA from one side of a membrane to the other. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA transporter activity Reactome:R-HSA-727759|Reactome:R-HSA-5649742 molecular_function owl:Class GO:0050631 biolink:NamedThing corydaline synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + 2 NADPH + palmatine = S-adenosyl-L-homocysteine + corydaline + 2 NADP(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:protoberberine 13-C-methyltransferase activity KEGG_REACTION:R07241|EC:2.1.1.147|MetaCyc:2.1.1.147-RXN|RHEA:14773 molecular_function owl:Class GO:0061129 biolink:NamedThing negative regulation of positive chemotaxis to cAMP by DIF-2 Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-2. DIF-2 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:50:33Z biological_process owl:Class GO:0061125 biolink:NamedThing negative regulation of positive chemotaxis to cAMP by chlorinated alkylphenone Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of a chlorinated alkylphenone. An alkylphenone is an aromatic polyketide with methyl and chlorine substitutions. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:36:55Z biological_process owl:Class GO:0047376 biolink:NamedThing all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity Catalysis of the reaction: all-trans-retinyl palmitate + H2O = all-trans-retinol + H+ + palmitate. tmpzr1t_l9r_go_relaxed.owl retinyl-palmitate palmitohydrolase activity|all-trans-retinyl-palmitate hydrolase activity|all-trans-retinyl-palmitate acylhydrolase activity MetaCyc:3.1.1.64-RXN|Reactome:R-HSA-2429643|Reactome:R-HSA-2404140|KEGG_REACTION:R02368|RHEA:13933 molecular_function owl:Class GO:0060528 biolink:NamedThing secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development The process in which a relatively unspecialized epithelial cell acquires specialized features of a secretory columnal luminar epithelial cell of the prostate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016336 biolink:NamedThing establishment or maintenance of polarity of larval imaginal disc epithelium Any cellular process that results in the specification, formation or maintenance of a polarized larval imaginal disc epithelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035823 biolink:NamedThing short tract gene conversion A gene conversion process in which a segment of about 50-200 base pairs is transferred from the donor to the acceptor. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-04T01:05:35Z biological_process owl:Class GO:0048084 biolink:NamedThing positive regulation of adult chitin-containing cuticle pigmentation Any process that activates or increases the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl stimulation of adult chitin-containing cuticle pigmentation|up-regulation of adult chitin-containing cuticle pigmentation|activation of adult chitin-containing cuticle pigmentation|up regulation of adult chitin-containing cuticle pigmentation|upregulation of adult chitin-containing cuticle pigmentation biological_process owl:Class GO:0048082 biolink:NamedThing regulation of adult chitin-containing cuticle pigmentation Any process that modulates the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000234 biolink:NamedThing phosphoethanolamine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + ethanolamine phosphate = S-adenosyl-L-homocysteine + N-methylethanolamine phosphate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:ethanolamine-phosphate N-methyltransferase activity|phosphoethanolamine methyltransferase activity EC:2.1.1.103|KEGG_REACTION:R02037|MetaCyc:2.1.1.103-RXN|RHEA:20365 molecular_function owl:Class GO:0070801 biolink:NamedThing positive regulation of conidiophore stalk development Any process that activates or increases the frequency, rate or extent of conidiophore stalk development, a process that leads to the formation of a conidiophore stalk. The conidiophore stalk is part of a specialized hypha that extends aerially from the growth substrate and supports structures from which conidia, or asexual spores, develop. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:11:22Z biological_process owl:Class GO:1903884 biolink:NamedThing regulation of chemokine (C-C motif) ligand 20 production Any process that modulates the frequency, rate or extent of chemokine (C-C motif) ligand 20 production. tmpzr1t_l9r_go_relaxed.owl regulation of CCL20 production|regulation of CCL-20 production|regulation of C-C motif chemokine 20 production krc 2015-02-06T16:31:02Z biological_process owl:Class GO:0042914 biolink:NamedThing colicin transport The directed movement of a colicin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Colicins are a group of antibiotics produced by E. coli and related species that are encoded by a group of naturally occurring plasmids, e.g. Col E1. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043213 biolink:NamedThing bacteriocin transport The directed movement of a bacteriocin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008934 biolink:NamedThing inositol monophosphate 1-phosphatase activity Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl L-myo-inositol-1-phosphate phosphatase activity|inositol 1-phosphatase activity|myo-inositol 1-phosphatase activity|myo-inositol-1(or 4)-phosphate phosphohydrolase activity|myo-inositol-1-phosphatase activity|myo-inositol-1(or 4)-monophosphatase activity|inositol-1(or 4)-monophosphatase activity RHEA:27670|EC:3.1.3.25|Reactome:R-HSA-1855154|MetaCyc:RXN0-5408 molecular_function owl:Class GO:0030697 biolink:NamedThing S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing thymine at position U54 of a transfer RNA. This occurs in most Gram-negative bacteria, some archae, and eukaryotes. tmpzr1t_l9r_go_relaxed.owl transfer RNA uracil 5-methyltransferase activity|ribothymidyl synthase activity|RUMT|M5U-methyltransferase activity|tRNA uracil 5-methyltransferase activity|S-adenosyl-L-methionine:tRNA (uracil-5-)-methyltransferase activity|tRNA (uracil-5-)-methyltransferase activity|S-adenosyl methionine-dependent tRNA (m5U54) methyltransferase activity|transfer RNA uracil methylase activity|tRNA:m5U54-methyltransferase activity|RUMT activity|tRNA:m(5)U54-methyltransferase activity EC:2.1.1.35|RHEA:42712|MetaCyc:TRNA-URACIL-5--METHYLTRANSFERASE-RXN GO:0009021 molecular_function owl:Class GO:0000836 biolink:NamedThing Hrd1p ubiquitin ligase complex A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal and membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. In mammals, this complex contains the ubiquitin ligase HRD1 (Synoviolin) or AMFR (gp78). tmpzr1t_l9r_go_relaxed.owl HRD1 ubiquitin ligase complex cellular_component owl:Class GO:0019530 biolink:NamedThing taurine metabolic process The chemical reactions and pathways involving taurine (2-aminoethanesulfonic acid), a sulphur-containing amino acid derivative important in the metabolism of fats. tmpzr1t_l9r_go_relaxed.owl taurine metabolism biological_process owl:Class GO:0009301 biolink:NamedThing snRNA transcription The synthesis of small nuclear RNA (snRNA) from a DNA template. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045338 biolink:NamedThing farnesyl diphosphate metabolic process The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation. tmpzr1t_l9r_go_relaxed.owl farnesyl diphosphate metabolism biological_process owl:Class GO:0044703 biolink:NamedThing multi-organism reproductive process A biological process that directly contributes to the process of producing new individuals, involving another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-09-19T15:56:30Z biological_process owl:Class GO:0060902 biolink:NamedThing regulation of hair cycle by BMP signaling pathway A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that modulates the rate, frequency or extent of the hair cycle. tmpzr1t_l9r_go_relaxed.owl regulation of hair cycle by BMP signalling pathway dph 2009-08-13T02:45:12Z biological_process owl:Class GO:1903174 biolink:NamedThing fatty alcohol catabolic process The chemical reactions and pathways resulting in the breakdown of fatty alcohol. tmpzr1t_l9r_go_relaxed.owl fatty alcohol degradation|fatty alcohol breakdown|fatty alcohol catabolism tt 2014-07-14T01:51:48Z biological_process owl:Class GO:0008690 biolink:NamedThing 3-deoxy-manno-octulosonate cytidylyltransferase activity Catalysis of the reaction: CTP + 3-deoxy-D-manno-octulosonate = diphosphate + CMP-3-deoxy-D-manno-octulosonate. tmpzr1t_l9r_go_relaxed.owl CMP-KDO synthetase activity|cytidine monophospho-3-deoxy-D-manno-octulosonate pyrophosphorylase activity|2-keto-3-deoxyoctonate cytidylyltransferase activity|CMP-3-deoxy-D-manno-octulosonate synthetase activity|CMP-2-keto-3-deoxyoctulosonic acid synthetase activity|CTP:3-deoxy-manno-octulosonate cytidylyltransferase activity|CMP-3-deoxy-D-manno-octulosonate pyrophosphorylase activity|CMP-3-deoxy-D-manno-octulosonate diphosphorylase activity|CTP:CMP-3-deoxy-D-manno-octulosonate cytidylyltransferase activity|3-deoxy-D-manno-octulosonate cytidylyltransferase activity|CTP:3-deoxy-D-manno-octulosonate cytidylyltransferase activity EC:2.7.7.38|MetaCyc:CPM-KDOSYNTH-RXN|RHEA:23448 molecular_function owl:Class GO:0072751 biolink:NamedThing cellular response to L-thialysine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-thialysine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to thialysine mah 2012-09-10T14:12:21Z biological_process owl:Class GO:1903859 biolink:NamedThing regulation of dendrite extension Any process that modulates the frequency, rate or extent of dendrite extension. tmpzr1t_l9r_go_relaxed.owl An example of this is Mul1 in mouse (UniProt ID Q8VCM5) in PMID:24898855 inferred from mutant phenotype. pad 2015-02-02T15:33:51Z biological_process owl:Class GO:0030300 biolink:NamedThing regulation of intestinal cholesterol absorption Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904002 biolink:NamedThing regulation of sebum secreting cell proliferation Any process that modulates the frequency, rate or extent of sebum secreting cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of sebocyte proliferation hjd 2015-03-06T16:19:44Z biological_process owl:Class GO:0072096 biolink:NamedThing negative regulation of branch elongation involved in ureteric bud branching Any process that reduces the frequency, rate or extent of branch elongation involved in ureteric bud branching, the growth of a branch of the ureteric bud along its axis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T01:52:09Z biological_process owl:Class GO:0090111 biolink:NamedThing regulation of COPII vesicle uncoating Any process that modulates the frequency, rate or extent of COPII vesicle uncoating, the process in which COPII vesicle coat proteins are disassembled, and released. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-06T08:34:01Z biological_process owl:Class GO:1900093 biolink:NamedThing positive regulation of raffinose biosynthetic process Any process that activates or increases the frequency, rate or extent of raffinose biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of raffinose anabolism|positive regulation of raffinose synthesis|up-regulation of raffinose biosynthetic process|up-regulation of raffinose synthesis|up regulation of raffinose anabolism|positive regulation of raffinose formation|up regulation of raffinose synthesis|upregulation of raffinose biosynthesis|upregulation of raffinose anabolism|upregulation of raffinose synthesis|positive regulation of raffinose anabolism|up regulation of raffinose formation|activation of raffinose biosynthetic process|up regulation of raffinose biosynthesis|activation of raffinose formation|positive regulation of raffinose biosynthesis|activation of raffinose synthesis|up-regulation of raffinose anabolism|up regulation of raffinose biosynthetic process|up-regulation of raffinose formation|upregulation of raffinose biosynthetic process|up-regulation of raffinose biosynthesis|activation of raffinose biosynthesis|upregulation of raffinose formation dhl 2012-02-08T06:32:01Z biological_process owl:Class GO:0016675 biolink:NamedThing oxidoreductase activity, acting on a heme group of donors Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on heme group of donors, other acceptors|oxidoreductase activity, acting on haem group of donors EC:1.9.-.- molecular_function owl:Class GO:0090241 biolink:NamedThing negative regulation of histone H4 acetylation Any process that decreases the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-20T03:48:09Z biological_process owl:Class GO:0016756 biolink:NamedThing glutathione gamma-glutamylcysteinyltransferase activity Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly. tmpzr1t_l9r_go_relaxed.owl glutathione:poly(4-glutamyl-cysteinyl)glycine 4-glutamylcysteinyltransferase activity|phytochelatin synthase activity|gamma-glutamylcysteine dipeptidyl transpeptidase activity MetaCyc:2.3.2.15-RXN|EC:2.3.2.15|RHEA:17917 GO:0042143 molecular_function owl:Class GO:0001835 biolink:NamedThing blastocyst hatching The hatching of the cellular blastocyst from the zona pellucida. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, zona pellucida ; EMAP:22' and 'TS5, embryo ; EMAP:23'. biological_process owl:Class GO:0009128 biolink:NamedThing purine nucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine nucleoside monophosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside monophosphate catabolism|purine nucleoside monophosphate breakdown|purine nucleoside monophosphate degradation biological_process owl:Class GO:0102173 biolink:NamedThing 24-methylenecycloartanol 4alpha-methyl oxidase activity Catalysis of the reaction: 24-methylenecycloartanol + NADH + O2 + H+ <=> 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:58836|MetaCyc:RXN-11926 molecular_function owl:Class GO:1990660 biolink:NamedThing calprotectin complex A protein complex composed of S100A8 and S100A9 and capable of limiting Mn(2+) and Zn(2+) availability at sites of infection. Also binds Ca(2+). Expressed and released by neutrophils and epithelial cells, it exhibits broad-spectrum antimicrobial activity attributed to its metal-binding properties. Endogenous ligand of toll-like receptor 4 (TLR4) and of the receptor for advanced glycation end products (RAGE) initiating signal transduction through NF-kappa-B pathways. tmpzr1t_l9r_go_relaxed.owl calprotectin heterodimer An example of this is S100A9 in human (UniProt symbol P06702) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T14:03:17Z cellular_component owl:Class GO:0006517 biolink:NamedThing protein deglycosylation The removal of sugar residues from a glycosylated protein. tmpzr1t_l9r_go_relaxed.owl glycoprotein deglycosylation biological_process owl:Class GO:2000102 biolink:NamedThing negative regulation of mammary stem cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of mammary stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T06:10:34Z biological_process owl:Class GO:0060818 biolink:NamedThing inactivation of paternal X chromosome by genetic imprinting Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on the paternal X-chromosome in the XX sex by genetic imprinting. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T10:52:31Z biological_process owl:Class GO:1990304 biolink:NamedThing MUB1-RAD6-UBR2 ubiquitin ligase complex A ubiquitin ligase complex consisting of MUB1, RAD6 and UBR2 components. It ubiquitinates, and targets for destruction, the RPN4 transcription factor, which upregulates the proteasome genes. The binding of MUB1 may position the RPN4 ubiquitylation site proximal to the Ubiquitin-RAD6 thioester and allow the transfer of Ubiquitin from RAD6 to RPN4. One of its components, MUB1, is a short-lived protein ubiquitinated by the UBR2-RAD6 ubiquitin conjugating enzyme. tmpzr1t_l9r_go_relaxed.owl This complex has been identified in Saccharomyces cerevisiae (UniProt symbol P19812) - see PMID:18070918. bhm 2014-03-03T21:54:21Z cellular_component owl:Class GO:0030965 biolink:NamedThing plasma membrane electron transport, NADH to quinone The transfer of electrons from NADH to the quinone pool that occurs during oxidative phosphorylation and results in the generation of a proton gradient, mediated by the enzyme known as NADH-quinone oxidoreductase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033614 biolink:NamedThing chloroplast proton-transporting ATP synthase complex assembly The aggregation, arrangement and bonding together of a proton-transporting ATP synthase in the chloroplast thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001039 biolink:NamedThing negative regulation of cellular response to drug Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to drug. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-27T04:12:23Z biological_process owl:Class GO:0009328 biolink:NamedThing phenylalanine-tRNA ligase complex An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097415 biolink:NamedThing cortical Lewy body Cytoplasmic inclusion similar to a classical Lewy body but lacking a halo of protein fibrils. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao4040591221 pr 2012-11-06T16:29:11Z cellular_component owl:Class GO:0097413 biolink:NamedThing Lewy body Cytoplasmic, spherical inclusion commonly found in damaged neurons, and composed of abnormally phosphorylated, neurofilament proteins aggregated with ubiquitin and alpha-synuclein. tmpzr1t_l9r_go_relaxed.owl cytoplasmic inclusion NIF_Subcellular:sao4933778419 pr 2012-11-06T16:26:08Z cellular_component owl:Class GO:1904432 biolink:NamedThing regulation of ferrous iron binding Any process that modulates the frequency, rate or extent of ferrous iron binding. tmpzr1t_l9r_go_relaxed.owl kom 2015-07-06T13:46:30Z biological_process owl:Class GO:0034465 biolink:NamedThing response to carbon monoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000905 biolink:NamedThing sporocarp development involved in asexual reproduction The formation of a spore-bearing structure by fungus where spores will arise from asexual reproduction. tmpzr1t_l9r_go_relaxed.owl monokaryotic fruiting|homokaryotic fruiting|haploid fruiting|fruiting body formation involved in asexual reproduction|conidium development|imperfect stage fruiting body development biological_process owl:Class GO:0030584 biolink:NamedThing sporocarp development The process whose specific outcome is the progression of a sporocarp over time, from its formation to the mature structure. The sporocarp is a spore bearing fruiting body organ. An example of this process is found in the Fungal species Coprinopsis cinerea. tmpzr1t_l9r_go_relaxed.owl fruiting body development biological_process owl:Class GO:0034657 biolink:NamedThing GID complex A protein complex with ubiquitin ligase activity that is involved in proteasomal degradation of fructose-1,6-bisphosphatase (FBPase) and phosphoenolpyruvate carboxykinase during the transition from gluconeogenic to glycolytic growth conditions. In S. cerevisiae, the GID (Glucose Induced degradation Deficient) complex consists of Vid30p, Rmd5p, Vid24p, Vid28p, Gid7p, Gid8p, and Fyv10p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035473 biolink:NamedThing lipase binding Binding to a lipase. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-22T05:28:52Z molecular_function owl:Class GO:0070039 biolink:NamedThing rRNA (guanosine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methylguanosine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6793096|Reactome:R-HSA-6793122 molecular_function owl:Class GO:0030309 biolink:NamedThing poly-N-acetyllactosamine metabolic process The chemical reactions and pathways involving poly-N-acetyllactosamine, a carbohydrate composed of N-acetyllactosamine repeats (Gal-beta-1,4-GlcNAc-beta-1,3)n. tmpzr1t_l9r_go_relaxed.owl poly-N-acetyllactosamine metabolism biological_process owl:Class GO:0002490 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-independent The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl TAP-independent endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway|TAP-independent antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway|endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway, TAP-independent biological_process owl:Class GO:0002488 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via an ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class Ib molecule in the ER. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway biological_process owl:Class GO:0070954 biolink:NamedThing negative regulation of neutrophil mediated cytotoxicity Any process that decreases the frequency, rate or extent of the directed killing of a target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl negative regulation of neutrophil mediated cell killing|down regulation of neutrophil mediated cytotoxicity|down-regulation of neutrophil mediated cytotoxicity|downregulation of neutrophil mediated cytotoxicity|inhibition of neutrophil mediated cytotoxicity mah 2009-10-01T02:20:17Z biological_process owl:Class GO:0007120 biolink:NamedThing axial cellular bud site selection The process of defining the next site of bud emergence adjacent to the last site of bud emergence on a budding cell. tmpzr1t_l9r_go_relaxed.owl axial budding|axial bud site selection biological_process owl:Class GO:0103004 biolink:NamedThing 9,10-epoxystearate hydroxylase activity Catalysis of the reaction: H+ + 9,10-epoxystearate + O2 + NADPH <=> 9,10-epoxy-18-hydroxystearate + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9805 molecular_function owl:Class GO:0050984 biolink:NamedThing peptidyl-serine sulfation The sulfation of peptidyl-serine to form peptidyl-O-sulfo-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0361 biological_process owl:Class GO:0060111 biolink:NamedThing alae of collagen and cuticulin-based cuticle extracellular matrix Raised, thickened cuticular ridges that run longitudinally, and in parallel, along the left and right sides of the animal. The alae lie above the hypodermal cells known as the lateral seam cells. In C. elegans, alae are produced in L1 larvae, dauer larvae and adult stage animals, where they consist of three, five, and three ridges of distinct morphology, respectively. tmpzr1t_l9r_go_relaxed.owl alae of collagen and cuticulin-based exoskeleton extracellular matrix cellular_component owl:Class GO:0102546 biolink:NamedThing mannosylglycerate hydrolase activity Catalysis of the reaction: H2O + 2-(alpha-D-mannosyl)-D-glycerate <=> alpha-D-mannose + D-glycerate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14900|RHEA:58456 molecular_function owl:Class GO:0016934 biolink:NamedThing extracellularly glycine-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a channel that opens when glycine is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl glycine-inhibited chloride channel activity|extracellular-glycine-gated chloride channel activity|glycine receptor Reactome:R-HSA-975389 GO:0004891 molecular_function owl:Class GO:0016933 biolink:NamedThing extracellularly glycine-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when glycine is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl extracellular-glycine-gated ion channel activity|glycine receptor molecular_function owl:Class GO:0008143 biolink:NamedThing poly(A) binding Binding to a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA. tmpzr1t_l9r_go_relaxed.owl poly(A) binding, within an RNA molecule|polyadenylate binding|poly(rA) binding|poly-A binding molecular_function owl:Class GO:0070717 biolink:NamedThing poly-purine tract binding Binding to a stretch of purines (adenine or guanine) in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-10T03:32:15Z molecular_function owl:Class GO:0035879 biolink:NamedThing plasma membrane lactate transport The directed movement of lactate across a plasma membrane. tmpzr1t_l9r_go_relaxed.owl lactate plasma membrane transport bf 2011-05-31T02:54:32Z biological_process owl:Class GO:0140493 biolink:NamedThing very long-chain fatty acid beta-oxidation A fatty acid beta-oxidation pathway acting on fatty acid which has a chain length greater than C22 in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed by oxidation pass directly to oxygen and produce hydrogen peroxide, which is cleaved by peroxisomal catalases. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19735 pg 2020-07-10T08:39:22Z biological_process owl:Class GO:0042760 biolink:NamedThing very long-chain fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very-long-chain fatty acid catabolism|very-long-chain fatty acid catabolic process|very-long-chain fatty acid breakdown|very-long-chain fatty acid degradation biological_process owl:Class GO:0001517 biolink:NamedThing N-acetylglucosamine 6-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-acetyl-D-glucosamine = adenosine 3',5'-bisphosphate + N-acetyl-D-glucosamine 6-sulfate. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine 6-O-sulphotransferase activity Reactome:R-HSA-6786012|Reactome:R-HSA-3656269|Reactome:R-HSA-2046222 molecular_function owl:Class GO:0150066 biolink:NamedThing negative regulation of deacetylase activity Any process that stops, prevents or reduces the frequency, rate or extent of deacetylase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-23T12:37:57Z biological_process owl:Class GO:1903752 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl up-regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|up regulation of intrinsic apoptotic signaling pathway in response to H2O2|activation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|up-regulation of intrinsic apoptotic signaling pathway in response to H2O2|positive regulation of intrinsic apoptotic signaling pathway in response to H2O2|up regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|up-regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|positive regulation of H2O2-induced intrinsic apoptotic signaling pathway|upregulation of H2O2-induced intrinsic apoptotic signaling pathway|up-regulation of H2O2-induced intrinsic apoptotic signaling pathway|up regulation of H2O2-induced intrinsic apoptotic signaling pathway|activation of H2O2-induced intrinsic apoptotic signaling pathway|positive regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|upregulation of intrinsic apoptotic signaling pathway in response to H2O2|activation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|upregulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|up regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|upregulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide|activation of intrinsic apoptotic signaling pathway in response to H2O2 krc 2014-12-12T23:04:46Z biological_process owl:Class GO:0047619 biolink:NamedThing acylcarnitine hydrolase activity Catalysis of the reaction: O-acylcarnitine + H2O = a fatty acid + L-carnitine. tmpzr1t_l9r_go_relaxed.owl HACH|O-acylcarnitine acylhydrolase activity|palmitoylcarnitine hydrolase activity|long-chain acyl-L-carnitine hydrolase activity|carnitine ester hydrolase activity|palmitoyl-L-carnitine hydrolase activity|palmitoyl carnitine hydrolase activity|high activity acylcarnitine hydrolase activity RHEA:17101|EC:3.1.1.28|MetaCyc:ACYLCARNITINE-HYDROLASE-RXN molecular_function owl:Class GO:0031697 biolink:NamedThing beta-1 adrenergic receptor binding Binding to a beta-1 adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl beta-1 adrenergic receptor ligand molecular_function owl:Class GO:0002159 biolink:NamedThing desmosome assembly A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm. tmpzr1t_l9r_go_relaxed.owl Desmosomes link two cells together; hemidesmosomes attach one cell to the extracellular matrix. hjd 2010-02-09T10:46:30Z biological_process owl:Class GO:0140204 biolink:NamedThing pyridoxal import across plasma membrane The directed movement of pyridoxal from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-21T19:17:27Z biological_process owl:Class GO:0019522 biolink:NamedThing ketogluconate metabolic process The chemical reactions and pathways involving ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group. tmpzr1t_l9r_go_relaxed.owl ketogluconate metabolism MetaCyc:KETOGLUCONMET-PWY biological_process owl:Class GO:0047279 biolink:NamedThing sn-glycerol-3-phosphate 1-galactosyltransferase activity Catalysis of the reaction: sn-glycerol 3-phosphate + UDP-D-galactose = 1-O-alpha-D-galactosyl-sn-glycerol 3-phosphate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphogalactose-glycerol phosphate galactosyltransferase activity|glycerol 3-phosphate 1alpha-galactosyltransferase activity|UDPgalactose:sn-glycerol-3-phosphate alpha-D-galactosyltransferase activity|UDP-Gal:sn-glycero-3-phosphoric acid 1-alpha-galactosyl-transferase activity|UDPgalactose:sn-glycerol-3-phosphate 1-alpha-D-galactosyltransferase activity|UDP-galactose:sn-glycerol-3-phosphate 1-alpha-D-galactosyltransferase activity|isofloridoside-phosphate synthase activity KEGG_REACTION:R00854|RHEA:20341|MetaCyc:2.4.1.96-RXN|EC:2.4.1.96 molecular_function owl:Class GO:0052078 biolink:NamedThing suppression by symbiont of defense-related host MAP kinase-mediated signal transduction pathway Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of a host MAP kinase-mediated signal transduction pathway during the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|negative regulation by organism of defense-related host MAPK-mediated signal transduction pathway|negative regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|suppression by organism of defense-related host MAP kinase-mediated signal transduction pathway|down-regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|inhibition by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|downregulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway|negative regulation by organism of defense-related MAP kinase-mediated signal transduction pathway in other organism involved in symbiotic interaction|negative regulation by organism of defense-related host mitogen-activated protein kinase-mediated signal transduction pathway https://github.com/geneontology/go-ontology/issues/19235 GO:0052275 biological_process owl:Class GO:0031207 biolink:NamedThing Sec62/Sec63 complex A protein complex involved in the posttranslational targeting of proteins to the ER. In yeast, it is a tetrameric complex consisting of Sec62p, Sec63p, Sec71p and Sec72p. tmpzr1t_l9r_go_relaxed.owl ER protein translocation subcomplex|Sec62/63 complex cellular_component owl:Class GO:0005500 biolink:NamedThing juvenile hormone binding Binding to a juvenile hormone, a sesquiterpenoid derivative that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120142 biolink:NamedThing positive regulation of ecdysone receptor-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of any ecdysone receptor-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T17:25:00Z biological_process owl:Class GO:1900352 biolink:NamedThing negative regulation of methanofuran biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of methanofuran biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of methanofuran biosynthetic process|inhibition of methanofuran biosynthesis|negative regulation of methanofuran biosynthesis|down regulation of methanofuran biosynthesis|down-regulation of methanofuran biosynthetic process|down regulation of methanofuran biosynthetic process|downregulation of methanofuran biosynthetic process|downregulation of methanofuran biosynthesis|down-regulation of methanofuran biosynthesis tt 2012-04-06T02:14:00Z biological_process owl:Class GO:0072549 biolink:NamedThing monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity Catalysis of the reaction: monocoumaroyl dicaffeoyl spermidine + NADPH + O2 = tricaffeoyl spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-25T02:58:04Z molecular_function owl:Class GO:0022036 biolink:NamedThing rhombomere cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a rhombomere cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061965 biolink:NamedThing positive regulation of entry into reproductive diapause Any process that activates or increases the rate or extent of the dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-05T15:06:51Z biological_process owl:Class GO:0002481 biolink:NamedThing antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl TAP-dependent antigen processing and presentation of exogenous peptide antigen via MHC class Ib|TAP-dependent exogenous peptide antigen processing and presentation via MHC class Ib|exogenous peptide antigen processing and presentation via MHC class Ib, TAP-dependent biological_process owl:Class GO:0002477 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen via MHC class Ib The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl exogenous peptide antigen processing and presentation via MHC class Ib biological_process owl:Class GO:1900972 biolink:NamedThing negative regulation of sarcinapterin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of sarcinapterin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of sarcinapterin anabolism|down regulation of sarcinapterin biosynthetic process|negative regulation of sarcinapterin biosynthesis|down-regulation of sarcinapterin biosynthetic process|down regulation of sarcinapterin synthesis|down-regulation of sarcinapterin formation|down regulation of sarcinapterin formation|down regulation of sarcinapterin anabolism|downregulation of sarcinapterin biosynthetic process|negative regulation of sarcinapterin anabolism|inhibition of sarcinapterin synthesis|inhibition of sarcinapterin anabolism|inhibition of sarcinapterin biosynthesis|downregulation of sarcinapterin biosynthesis|down-regulation of sarcinapterin synthesis|inhibition of sarcinapterin formation|down-regulation of sarcinapterin biosynthesis|down regulation of sarcinapterin biosynthesis|negative regulation of sarcinapterin synthesis|downregulation of sarcinapterin anabolism|inhibition of sarcinapterin biosynthetic process|downregulation of sarcinapterin formation|downregulation of sarcinapterin synthesis|negative regulation of sarcinapterin formation tt 2012-06-14T04:00:06Z biological_process owl:Class GO:0001572 biolink:NamedThing lactosylceramide biosynthetic process The chemical reactions and pathways resulting in the formation of lactosylceramides, Gal-beta-(1->4)-Glc-beta(1->1') ceramides, any compound formed by the replacement of the glycosidic C1 hydroxyl group of lactose by a ceramide group. They are the precursors of both gangliosides and globosides. tmpzr1t_l9r_go_relaxed.owl lactosylceramide anabolism|lactosylceramide synthesis|lactosylceramide biosynthesis|lactosylceramide formation biological_process owl:Class GO:0007319 biolink:NamedThing negative regulation of oskar mRNA translation Any process that stops, prevents or reduces the rate that oskar mRNAs are effectively translated into protein. tmpzr1t_l9r_go_relaxed.owl down-regulation of oskar mRNA translation|inhibition of oskar mRNA translation|down regulation of oskar mRNA translation|downregulation of oskar mRNA translation biological_process owl:Class GO:0051067 biolink:NamedThing dihydropteridine metabolic process The chemical reactions and pathways involving 6,7-dihydropteridine, a bicyclic compound with the formula C6H6N4. tmpzr1t_l9r_go_relaxed.owl dihydropteridine metabolism|6,7-dihydropteridine metabolic process|dihydropteridine reduction biological_process owl:Class GO:0004598 biolink:NamedThing peptidylamidoglycolate lyase activity Catalysis of the reaction: peptidylamidoglycolate = peptidyl amide + glyoxylate. tmpzr1t_l9r_go_relaxed.owl peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity|PGL|HGAD|alpha-hydroxyglycine amidating dealkylase activity|peptidylamidoglycolate peptidylamide-lyase (glyoxylate-forming)|peptidylamidoglycolate peptidylamide-lyase activity|PAL MetaCyc:PEPTIDYLAMIDOGLYCOLATE-LYASE-RXN|RHEA:20924|EC:4.3.2.5 molecular_function owl:Class GO:0031451 biolink:NamedThing positive regulation of slow-twitch skeletal muscle fiber contraction Any process that activates or increases the frequency, rate or extent of slow-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of slow-twitch skeletal muscle contraction|positive regulation of slow-twitch skeletal muscle contraction|stimulation of slow-twitch skeletal muscle contraction|activation of slow-twitch skeletal muscle contraction|upregulation of slow-twitch skeletal muscle contraction|up regulation of slow-twitch skeletal muscle contraction biological_process owl:Class GO:0042820 biolink:NamedThing vitamin B6 catabolic process The chemical reactions and pathways resulting in the breakdown of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl vitamin B6 degradation|vitamin B6 breakdown|vitamin B6 catabolism biological_process owl:Class GO:0090516 biolink:NamedThing L-serine transmembrane import into vacuole The directed movement of L-serine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-14T11:25:52Z biological_process owl:Class GO:1904108 biolink:NamedThing protein localization to ciliary inversin compartment A process in which a protein is transported to, or maintained in, a location within a ciliary inversin compartment. tmpzr1t_l9r_go_relaxed.owl protein localization in ciliary inversin compartment|protein localisation in ciliary inversin compartment|protein localisation to ciliary inversin compartment kmv 2015-04-01T20:54:26Z biological_process owl:Class GO:1990316 biolink:NamedThing Atg1/ULK1 kinase complex A protein complex consisting of Atg1 (or Atg1 homologs e.g. ULK1, ULK2 in mammals) and Atg13 along with other proteins that regulate its function (e.g. Atg17 in yeast or RB1CC1(FIP200) in mammals). This complex has serine/threonine protein kinase activity and is involved in autophagosome formation. tmpzr1t_l9r_go_relaxed.owl ATG1 kinase complex|ATG1/ULK1 signaling complex|ULK1 complex|Atg1p signalling complex|ULK1-ATG13-FIP200 complex|ULK1-ATG13-RB1CC1 complex|ULK complex|ATG1-ATG13 complex|autophagy-initiation complex|ULK1 signaling complex bhm 2014-03-14T10:55:11Z GO:0034273|GO:0070969 cellular_component owl:Class GO:0090011 biolink:NamedThing Wnt signaling pathway involved in primitive streak formation The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that contribute to the formation of the primitive streak. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway involved in primitive streak formation|Wnt receptor signaling pathway involved in primitive streak formation|Wnt-activated signaling pathway involved in primitive streak formation tb 2009-07-29T10:44:53Z biological_process owl:Class GO:0098675 biolink:NamedThing intrinsic component of neuronal dense core vesicle membrane The component of the neuronal dense core vesicle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to neuronal dense core granule membrane dos 2017-01-17T16:22:44Z cellular_component owl:Class GO:1904152 biolink:NamedThing regulation of retrograde protein transport, ER to cytosol Any process that modulates the frequency, rate or extent of retrograde protein transport, ER to cytosol. tmpzr1t_l9r_go_relaxed.owl regulation of protein dislocation from ER|regulation of retrograde protein transport, endoplasmic reticulum to cytosol|regulation of protein retrotranslocation from ER bf 2015-04-15T09:23:06Z biological_process owl:Class GO:0009864 biolink:NamedThing induced systemic resistance, jasmonic acid mediated signaling pathway The series of molecular signals mediated by jasmonic acid involved in induced systemic resistance. tmpzr1t_l9r_go_relaxed.owl jasmonic acid mediated signaling pathway (induced systemic resistance)|induced systemic resistance, jasmonic acid mediated signalling pathway biological_process owl:Class GO:0008607 biolink:NamedThing phosphorylase kinase regulator activity Modulation of the activity of the enzyme phosphorylase kinase. tmpzr1t_l9r_go_relaxed.owl phosphorylase kinase, intrinsic regulator activity EC:2.7.1.- molecular_function owl:Class GO:0018356 biolink:NamedThing protein-phycobiliviolin linkage via S-phycobiliviolin-L-cysteine The linkage of the chromophore phycobiliviolin to phycoerythrocyanin via S-phycobiliviolin-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0258 GO:0018382 biological_process owl:Class GO:1901428 biolink:NamedThing regulation of syringal lignin biosynthetic process Any process that modulates the frequency, rate or extent of syringal lignin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of S-lignin biosynthetic process|regulation of syringal lignin anabolism|regulation of syringal lignin biosynthesis|regulation of syringal lignin formation|regulation of syringal lignin synthesis tb 2012-10-01T20:13:41Z biological_process owl:Class GO:0090680 biolink:NamedThing disruption by virus of host outer membrane A process by which a virus has a negative effect on the functioning of a host outer membrane. tmpzr1t_l9r_go_relaxed.owl tb 2016-05-04T15:52:02Z biological_process owl:Class GO:0044662 biolink:NamedThing disruption by virus of host cell membrane A process by which a virus has a negative effect on the functioning of a host cellular membrane. tmpzr1t_l9r_go_relaxed.owl disruption by organism of host cell membrane jl 2012-08-01T13:44:52Z biological_process owl:Class GO:0075216 biolink:NamedThing positive regulation of spore encystment on host Any process that activates, maintains or increases the frequency, rate or extent of spore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120123 biolink:NamedThing ubiquitin activating enzyme complex A protein complex responsible for the catalysis of the reaction: E1 + ubiquitin + ATP--> E1-ubiquitin + AMP + PPi, where the E1-ubiquitin linkage is a thioester bond between the C-terminal glycine of Ub and a sulfhydryl side group of an E1 cysteine residue. This is the first step in a cascade of reactions in which ubiquitin is ultimately added to a protein substrate. tmpzr1t_l9r_go_relaxed.owl E1 ubiquitin-activating enzyme|E1 complex krc 2018-01-29T19:28:56Z cellular_component owl:Class GO:0003018 biolink:NamedThing vascular process in circulatory system A circulatory process that occurs at the level of the vasculature. tmpzr1t_l9r_go_relaxed.owl vasculature process biological_process owl:Class GO:0032263 biolink:NamedThing GMP salvage Any process which produces guanosine monophosphate from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006177 biolink:NamedThing GMP biosynthetic process The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl GMP biosynthesis|GMP anabolism|GMP synthesis|GMP formation biological_process owl:Class GO:0051686 biolink:NamedThing establishment of ER localization The directed movement of the endoplasmic reticulum to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of ER localisation|establishment of endoplasmic reticulum localization biological_process owl:Class GO:0006500 biolink:NamedThing N-terminal protein palmitoylation The covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047508 biolink:NamedThing (R)-2-methylmalate dehydratase activity Catalysis of the reaction: (R)-citramalate = 2-methylmaleate + H(2)O. tmpzr1t_l9r_go_relaxed.owl citramalate hydro-lyase activity|(R)-2-methylmalate hydro-lyase activity|citraconate hydratase activity|(-)-citramalate hydro-lyase activity|citraconase activity|(R)-2-methylmalate hydro-lyase (2-methylmaleate-forming) RHEA:22332|KEGG_REACTION:R03896|EC:4.2.1.35|MetaCyc:R-2-METHYLMALATE-DEHYDRATASE-RXN molecular_function owl:Class GO:0045686 biolink:NamedThing negative regulation of glial cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of glia cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of glia cell differentiation|inhibition of glial cell differentiation|downregulation of glial cell differentiation|down-regulation of glial cell differentiation|down regulation of glial cell differentiation|negative regulation of neuroglia differentiation biological_process owl:Class GO:0071049 biolink:NamedThing nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription The process involved in retention of mRNAs that have incorrectly formed 3'-ends within the nucleus at the site of transcription. tmpzr1t_l9r_go_relaxed.owl krc 2009-08-11T02:40:56Z biological_process owl:Class GO:0019643 biolink:NamedThing reductive tricarboxylic acid cycle A pathway leading to the fixation of two molecules of CO2 and the production of one molecule of acetyl-CoA; essentially the oxidative TCA cycle running in reverse. Acetyl-CoA is reductively carboxylated to pyruvate, from which all other central metabolites can be formed. Most of the enzymes of reductive and oxidative TCA cycle are shared, with the exception of three key enzymes that allow the cycle to run in reverse: ATP citrate lyase, 2-oxoglutarate:ferredoxin oxidoreductase, and fumarate reductase. 2-oxoglutarate:ferredoxin oxidoreductase catalyzes the carboxylation of succinyl-CoA to 2-oxoglutarate, ATP citrate lyase the ATP-dependent cleavage of citrate to acetyl-CoA and oxaloacetate, and fumarate reductase the reduction of fumarate forming succinate. tmpzr1t_l9r_go_relaxed.owl reductive citric acid pathway|reductive carboxylic acid cycle|reductive carboxylate cycle|reductive TCA cycle|reductive Kreb's cycle MetaCyc:REDCITCYC|MetaCyc:P23-PWY GO:0019644 biological_process owl:Class GO:0035871 biolink:NamedThing protein K11-linked deubiquitination A protein deubiquitination process in which a K11-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 11 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl protein K11-linked deubiquitylation|protein K11-linked deubiquitinylation bf 2011-05-26T11:44:13Z biological_process owl:Class GO:0071011 biolink:NamedThing precatalytic spliceosome A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal complex B|yeast spliceosomal complex A2-1|mammalian spliceosomal complex B1 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0071848 biolink:NamedThing positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling Any TNFSF11-mediated signaling process that increases the rate, frequency, or extent of the ERK1 and ERK2 cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signalling|positive regulation of ERK1 and ERK2 cascade via RANKL-mediated signaling mah 2010-09-10T02:25:31Z biological_process owl:Class GO:0046848 biolink:NamedThing hydroxyapatite binding Binding to hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentin. tmpzr1t_l9r_go_relaxed.owl hydroxylapatite binding molecular_function owl:Class GO:0007291 biolink:NamedThing sperm individualization The resolution of the male germline syncytium or cyst into individual gametes by packaging each spermatid into its own plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007349 biolink:NamedThing cellularization The separation of a multi-nucleate cell or syncytium into individual cells. An example of this is found in Drosophila melanogaster embryo development. tmpzr1t_l9r_go_relaxed.owl GO:0009796 biological_process owl:Class GO:0007374 biolink:NamedThing posterior midgut invagination Formation of a cup-shaped invagination at the posterior end of the embryo, bringing the posterior midgut and hindgut primordia into the interior. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001801 biolink:NamedThing positive regulation of type IIb hypersensitivity Any process that activates or increases the frequency, rate or extent of type IIb hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl up regulation of type IIb hypersensitivity|stimulation of type IIb hypersensitivity|upregulation of type IIb hypersensitivity|up-regulation of type IIb hypersensitivity|activation of type IIb hypersensitivity biological_process owl:Class GO:0009921 biolink:NamedThing auxin efflux carrier complex The protein complex associated with the plasma membrane of certain plant cells (e.g. root cortex, epidermal cells) that functions to transport auxin out of the cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046711 biolink:NamedThing GDP biosynthetic process The chemical reactions and pathways resulting in the formation of GDP, guanosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP anabolism|GDP synthesis|GDP biosynthesis|GDP formation biological_process owl:Class GO:0010752 biolink:NamedThing regulation of cGMP-mediated signaling Any process that modulates the rate, frequency or extent of cGMP-mediated signaling. cGMP-mediated signaling is a series of molecular signals in which a cell uses cyclic GMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl regulation of cGMP-mediated signalling biological_process owl:Class GO:1901268 biolink:NamedThing cephalosporin C biosynthetic process The chemical reactions and pathways resulting in the formation of cephalosporin C. tmpzr1t_l9r_go_relaxed.owl cephalosporin C synthesis|cephalosporin C anabolism|cephalosporin C biosynthesis|cephalosporin C formation yaf 2012-08-17T14:26:31Z biological_process owl:Class GO:0002242 biolink:NamedThing defense response to parasitic plant Reactions triggered in response to the presence of a parasitic plant that act to protect an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006603 biolink:NamedThing phosphocreatine metabolic process The chemical reactions and pathways involving phosphocreatine, a phosphagen of creatine present in high concentration in striated muscle which is synthesized and broken down by creatine phosphokinase to buffer ATP concentration. It acts as an immediate energy reserve for muscle. tmpzr1t_l9r_go_relaxed.owl phosphocreatine metabolism biological_process owl:Class GO:0017081 biolink:NamedThing chloride channel regulator activity Binds to and modulates the activity of a chloride channel. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-383190 molecular_function owl:Class GO:0106352 biolink:NamedThing aspartate dehydrogenase NADP activity Catalysis of the reaction: L-aspartate + H2O + NADP+ = oxaloacetate + NH3 + NADPH+ H+. tmpzr1t_l9r_go_relaxed.owl RHEA:11784 hjd 2021-01-20T17:40:23Z molecular_function owl:Class GO:2000903 biolink:NamedThing cellooligosaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of a cellooligosaccharide. tmpzr1t_l9r_go_relaxed.owl cellooligosaccharide catabolism jl 2011-07-28T03:21:49Z biological_process owl:Class GO:0014837 biolink:NamedThing myoblast fate determination involved in skeletal muscle regeneration The process in which a satellite cell becomes capable of differentiating autonomously into a myoblast regardless of its environment; upon determination, the cell fate cannot be reversed. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007518 biolink:NamedThing myoblast fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a myoblast regardless of its environment; upon determination, the cell fate cannot be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900554 biolink:NamedThing asperfuranone biosynthetic process The chemical reactions and pathways resulting in the formation of asperfuranone. tmpzr1t_l9r_go_relaxed.owl asperfuranone anabolism|asperfuranone biosynthesis|asperfuranone formation|asperfuranone synthesis di 2012-05-15T01:31:58Z biological_process owl:Class GO:0050771 biolink:NamedThing negative regulation of axonogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of axonogenesis|downregulation of axonogenesis|inhibition of axonogenesis|down regulation of axonogenesis biological_process owl:Class GO:0008355 biolink:NamedThing olfactory learning Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042048 biolink:NamedThing olfactory behavior The behavior of an organism in response to an odor. tmpzr1t_l9r_go_relaxed.owl behavioural response to odour|behavioral response to scent|behavioral response to smell|behavioural response to smell|olfactory behaviour|behavioural response to scent biological_process owl:Class GO:0070608 biolink:NamedThing regulation of cell wall (1->3)-alpha-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of cells. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall 1,3-alpha-glucan biosynthesis|regulation of cell wall alpha-1,3-glucan formation|regulation of cell wall alpha-1,3-glucan biosynthesis|regulation of cell wall 1,3-alpha-glucan synthesis|regulation of cell wall 1,3-alpha-glucan formation|regulation of cell wall alpha-1,3-glucan anabolism|regulation of cell wall 1,3-alpha-glucan anabolism|regulation of cell wall alpha-1,3-glucan biosynthetic process|regulation of cell wall 1,3-alpha-glucan biosynthetic process|regulation of cell wall alpha-1,3-glucan synthesis mah 2009-04-29T01:27:15Z biological_process owl:Class GO:0070606 biolink:NamedThing regulation of (1->3)-alpha-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-1,3 glucan synthesis|regulation of alpha-1,3 glucan formation|regulation of 1,3-alpha-glucan biosynthetic process|regulation of 1,3-alpha-glucan biosynthesis|regulation of 1,3-alpha-glucan formation|regulation of alpha-1,3 glucan biosynthesis|regulation of alpha-1,3 glucan biosynthetic process|regulation of 1,3-alpha-glucan synthesis|regulation of alpha-1,3 glucan anabolism|regulation of 1,3-alpha-glucan anabolism mah 2009-04-29T01:22:45Z biological_process owl:Class GO:0004831 biolink:NamedThing tyrosine-tRNA ligase activity Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl tyrosyl-transfer ribonucleate synthetase activity|L-tyrosine-tRNATyr ligase (AMP-forming)|tyrosine tRNA synthetase activity|tyrosyl-tRNA synthetase activity|L-tyrosine:tRNATyr ligase (AMP-forming)|tyrosyl-transfer ribonucleic acid synthetase activity|tyrosine-transfer ribonucleate synthetase activity|tyrosyl-transfer RNA synthetase activity|tyrosine-transfer RNA ligase activity|L-tyrosine-tRNA(Tyr) ligase (AMP-forming) activity|tyrosine translase activity|tyrosyl-tRNA ligase activity RHEA:10220|MetaCyc:TYROSINE--TRNA-LIGASE-RXN|Reactome:R-HSA-380170|Reactome:R-HSA-379980|KEGG_REACTION:R02918|EC:6.1.1.1 molecular_function owl:Class GO:0031272 biolink:NamedThing regulation of pseudopodium assembly Any process that modulates the frequency, rate or extent of the assembly of pseudopodia. tmpzr1t_l9r_go_relaxed.owl regulation of pseudopodium formation biological_process owl:Class GO:0071490 biolink:NamedThing cellular response to far red light Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl cellular response to far red light stimulus mah 2009-12-18T02:19:40Z biological_process owl:Class GO:0047881 biolink:NamedThing estradiol 17-alpha-dehydrogenase activity Catalysis of the reaction: estradiol-17-alpha + NAD(P)+ = estrone + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 17alpha-hydroxysteroid oxidoreductase activity|estradiol 17alpha-oxidoreductase activity|17alpha-estradiol dehydrogenase activity|estradiol 17alpha-dehydrogenase activity|estradiol 17a-dehydrogenase activity|17alpha-hydroxysteroid:NAD(P)+ 17-oxidoreductase activity|17alpha-hydroxy steroid oxidoreductase activity|17alpha-hydroxy steroid dehydrogenase activity MetaCyc:ESTRADIOL-17-ALPHA-DEHYDROGENASE-RXN|EC:1.1.1.148 molecular_function owl:Class GO:0045169 biolink:NamedThing fusome A large intracellular spectrin-rich structure that has been found in insect germline cells and mammalian hematopoietic cells. The fusome is an elongated, branched structure, formed from the spherical spectrosome organelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0020003 biolink:NamedThing symbiont-containing vacuole Membrane-bounded vacuole within a host cell in which a symbiont organism resides. The vacuole membrane is derived from both the host and symbiont. tmpzr1t_l9r_go_relaxed.owl SCV|bacterium-containing vacuole|parasitophorous vacuole|Salmonella-containing vacuole|pathogen-occupied vacuole Note that this term does not have a relationship to 'vacuole ; GO:0005773' because it does not fit the definition of a vacuole; the parasitophorous vacuole was so named because it resembles a vacuole in the microscope. cellular_component owl:Class GO:0047626 biolink:NamedThing adenosylmethionine hydrolase activity Catalysis of the reaction: S-adenosyl-L-methionine + H(2)O = S-methyl-5'-thioadenosine + L-homoserine + H(+). tmpzr1t_l9r_go_relaxed.owl adenosylmethionine lyase activity|adenosyl methionine hydrolase activity|methylmethionine-sulfonium-salt hydrolase activity|S-adenosylmethionine cleaving enzyme activity|S-adenosyl-L-methionine hydrolase activity RHEA:14645|KEGG_REACTION:R00175|MetaCyc:ADENOSYLMETHIONINE-HYDROLASE-RXN|EC:3.3.1.2 molecular_function owl:Class GO:0016802 biolink:NamedThing trialkylsulfonium hydrolase activity Catalysis of the hydrolysis of a thioether bond, -S-. tmpzr1t_l9r_go_relaxed.owl thioether hydrolase activity|trialkylsulphonium hydrolase activity EC:3.3.1.- molecular_function owl:Class GO:1905797 biolink:NamedThing negative regulation of intraciliary anterograde transport Any process that stops, prevents or reduces the frequency, rate or extent of intraciliary anterograde transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of intraflagellar anterograde transport|downregulation of intraflagellar anterograde transport|downregulation of intraciliary anterograde transport|down-regulation of intraflagellar anterograde transport|inhibition of intraflagellar anterograde transport|inhibition of intraciliary anterograde transport|down regulation of intraflagellar anterograde transport|down regulation of intraciliary anterograde transport|down-regulation of intraciliary anterograde transport hbye 2017-01-11T12:55:53Z biological_process owl:Class GO:1901458 biolink:NamedThing negative regulation of response to acetate Any process that stops, prevents or reduces the frequency, rate or extent of response to acetate. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to acetate|inhibition of response to acetate|down regulation of response to acetate|downregulation of response to acetate tt 2012-10-02T14:26:15Z biological_process owl:Class GO:0002690 biolink:NamedThing positive regulation of leukocyte chemotaxis Any process that activates or increases the frequency, rate, or extent of leukocyte chemotaxis. tmpzr1t_l9r_go_relaxed.owl activation of leukocyte chemotaxis|positive regulation of leucocyte chemotaxis|up regulation of leukocyte chemotaxis|positive regulation of immune cell chemotaxis|stimulation of leukocyte chemotaxis|upregulation of leukocyte chemotaxis|up-regulation of leukocyte chemotaxis biological_process owl:Class GO:1901168 biolink:NamedThing 3-chlorocatechol catabolic process The chemical reactions and pathways resulting in the breakdown of 3-chlorocatechol. tmpzr1t_l9r_go_relaxed.owl 3-chlorocatechol degradation|3-chlorocatechol breakdown|3-chlorocatechol catabolism yaf 2012-07-19T09:33:38Z biological_process owl:Class GO:0102384 biolink:NamedThing 19-O-beta-glucopyranosyl-steviol glucosyltransferase activity Catalysis of the reaction: 19-O-beta-glucopyranosyl-steviol + UDP-alpha-D-glucose <=> rubusoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13521 molecular_function owl:Class GO:0070141 biolink:NamedThing response to UV-A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 315 to 400 nm. tmpzr1t_l9r_go_relaxed.owl response to UVA light stimulus|response to UV-A light stimulus|response to UVA radiation stimulus|response to UV-A radiation stimulus biological_process owl:Class GO:1990856 biolink:NamedThing methionyl-initiator methionine tRNA binding Binding to methionine-initator methionine tRNA. tmpzr1t_l9r_go_relaxed.owl An example of this is eukaryotic initiation factor 2 complex, which binds the methionyl-initiator methionine tRNA during ternary complex formation. The non-acylated tRNA is not bound. hjd 2015-09-18T16:56:59Z molecular_function owl:Class GO:0044530 biolink:NamedThing supraspliceosomal complex Multicomponent complex of RNA and proteins that is composed of four active spliceosomes, termed native spliceosomes, connected to each other by the pre-mRNA. The supraspliceosome is the nuclear machine where the pre-mRNA processing takes place, like the 5'-end capping, 3'-end cleavage, splicing and editing. tmpzr1t_l9r_go_relaxed.owl supraspliceosome complex jl 2012-03-15T03:33:08Z cellular_component owl:Class GO:0043382 biolink:NamedThing positive regulation of memory T cell differentiation Any process that activates or increases the frequency, rate or extent of memory T cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of memory T-cell differentiation|up regulation of memory T cell differentiation|positive regulation of memory T-lymphocyte differentiation|positive regulation of memory T cell development|upregulation of memory T cell differentiation|positive regulation of memory T lymphocyte differentiation|stimulation of memory T cell differentiation|up-regulation of memory T cell differentiation|activation of memory T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0035156 biolink:NamedThing fusion cell fate specification The process in which a cell becomes capable of differentiating autonomously into a fusion cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. Fusion cells allow the interconnection of adjacent tracheal metameres during tracheal tube fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035153 biolink:NamedThing epithelial cell type specification, open tracheal system Allocation of epithelial cells within each migrating branch in an open tracheal system to distinct tracheal cell fates. During the migration phase each branch forms a well-defined number of cell types (including fusion cells, terminal cells and branch cells) at precise positions. tmpzr1t_l9r_go_relaxed.owl tracheal epithelial cell type specification|tracheal cell type specification biological_process owl:Class GO:0001705 biolink:NamedThing ectoderm formation The formation of ectoderm during gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015717 biolink:NamedThing triose phosphate transport The directed movement of triose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl aldotriose phosphate transport biological_process owl:Class GO:0034244 biolink:NamedThing negative regulation of transcription elongation from RNA polymerase II promoter Any process that stops, prevents, or reduces the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl negative regulation of RNA elongation from RNA polymerase II promoter|negative regulation of gene-specific transcription elongation from RNA polymerase II promoter GO:0090041 biological_process owl:Class GO:0034243 biolink:NamedThing regulation of transcription elongation from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl regulation of RNA elongation from RNA polymerase II promoter|regulation of gene-specific transcription elongation from RNA polymerase II promoter GO:0090039 biological_process owl:Class GO:0047893 biolink:NamedThing flavonol 3-O-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a flavonol = UDP + a flavonol 3-O-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDPglucose:flavonol 3-O-D-glucosyltransferase activity|UDPG:flavonoid-3-O-glucosyltransferase activity|UDP-glucose flavonol 3-O-glucosyltransferase activity|UDP-glucose:flavonol 3-O-glucosyltransferase activity|uridine diphosphoglucose-flavonol 3-O-glucosyltransferase activity|UDP-glucose:flavonol 3-O-D-glucosyltransferase activity|GTI EC:2.4.1.91|MetaCyc:FLAVONOL-3-O-GLUCOSYLTRANSFERASE-RXN|RHEA:22300 molecular_function owl:Class GO:0106373 biolink:NamedThing 3-deoxyglucosone dehydrogenase activity Catalysis of the reaction: 3-deoxyglucosone + H2O + NAD(+) = 2-dehydro-3-deoxy-D-gluconate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl hjd 2021-04-12T14:48:12Z molecular_function owl:Class GO:1903612 biolink:NamedThing positive regulation of calcium-dependent ATPase activity Any process that activates or increases the frequency, rate or extent of calcium-dependent ATPase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of calcium-dependent ATPase activity|up regulation of calcium-dependent ATPase activity|activation of calcium-dependent ATPase activity|up-regulation of calcium-dependent ATPase activity sl 2014-11-18T00:43:06Z biological_process owl:Class GO:0048758 biolink:NamedThing companion cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a companion cell. The companion cell is the specialized parenchyma cell associated with a sieve-tube member in angiosperm phloem and arising from the same mother cell as the sieve-tube member. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048760 biolink:NamedThing plant parenchymal cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a parenchymal cell. Parenchymal cells are the most abundant and versatile cells in plants. They have very few distinguishing characteristics and botanists classify them as any cell type that cannot be assigned to any other structural or functional class. They can redifferentiate and dedifferentiate and are involved in storage, basic metabolism and other processes. The cells are polyhedral, typically with thin, non-lignified cellulose cell walls and nucleate living protoplasm. They vary in size, form, and wall structure. tmpzr1t_l9r_go_relaxed.owl parenchymal cell differentiation biological_process owl:Class GO:0007112 biolink:NamedThing male meiosis cytokinesis A cell cycle process that occurs as part of the male meiotic cell cycle and results in the division of the cytoplasm of a cell to produce two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis after male meiosis|cytokinesis involved in male meiotic cell cycle biological_process owl:Class GO:0016900 biolink:NamedThing oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a disulfide molecule. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-OH group of donors, disulphide as acceptor EC:1.1.4.- molecular_function owl:Class GO:0010172 biolink:NamedThing embryonic body morphogenesis The process in which the anatomical structures of the embryonic soma are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010167 biolink:NamedThing response to nitrate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031917 biolink:NamedThing negative regulation of synaptic metaplasticity A process that decreases synaptic metaplasticity. Metaplasticity is a higher-order form of plasticity and is manifest as a change in the ability to induce subsequent synaptic plasticity that is the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl down-regulation of synaptic metaplasticity|inhibition of synaptic metaplasticity|down regulation of synaptic metaplasticity|downregulation of synaptic metaplasticity biological_process owl:Class GO:0031916 biolink:NamedThing regulation of synaptic metaplasticity A process that modulates synaptic metaplasticity. Metaplasticity is a higher-order form of plasticity and is manifest as a change in the ability to induce subsequent synaptic plasticity that is the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030337 biolink:NamedThing DNA polymerase processivity factor activity An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it. tmpzr1t_l9r_go_relaxed.owl sliding clamp|processivity clamp molecular_function owl:Class GO:1904594 biolink:NamedThing regulation of termination of RNA polymerase II transcription Any process that modulates the frequency, rate or extent of termination of RNA polymerase II transcription. tmpzr1t_l9r_go_relaxed.owl regulation of RNA polymerase II transcription termination factor activity|regulation of transcription termination from Pol II promoter|regulation of RNA 3'-end formation by RNA polymerase II|regulation of transcription termination from RNA polymerase II promoter|regulation of RNA polymerase II transcription termination al 2015-08-25T08:56:06Z biological_process owl:Class GO:1901417 biolink:NamedThing negative regulation of response to ethanol Any process that stops, prevents or reduces the frequency, rate or extent of response to ethanol. tmpzr1t_l9r_go_relaxed.owl downregulation of response to ethanol|down-regulation of response to ethanol|inhibition of response to ethanol|down regulation of response to ethanol tt 2012-10-01T16:49:33Z biological_process owl:Class GO:0038087 biolink:NamedThing VEGF-activated platelet-derived growth factor receptor-alpha signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to an alpha-type platelet-derived growth factor receptor (PDGFR) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGF-activated platelet-derived growth factor receptor-alpha signalling pathway|VEGF-activated PDGFRalpha signalling pathway|VEGF/PDGFRalpha signaling pathway|vascular endothelial growth factor-activated platelet-derived growth factor receptor-alpha signaling pathway|VEGF-A/PDGFRalpha signaling bf 2012-02-01T03:08:13Z biological_process owl:Class GO:0070217 biolink:NamedThing transcription factor TFIIIB complex assembly The aggregation, arrangement and bonding together of a set of components to form a transcription factor TFIIIB complex. tmpzr1t_l9r_go_relaxed.owl TFIIIB assembly biological_process owl:Class GO:1902016 biolink:NamedThing poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthetic process|poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthesis|poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthesis|poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid anabolism|poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid synthesis|poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid formation tb 2013-03-22T15:43:59Z biological_process owl:Class GO:1902015 biolink:NamedThing poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolic process The chemical reactions and pathways involving poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolism|poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolism|poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolic process tb 2013-03-22T15:43:55Z biological_process owl:Class GO:0009777 biolink:NamedThing photosynthetic phosphorylation Any metabolic process in which photosynthetic organisms use light energy to convert ADP to ATP without the concomitant reduction of dioxygen (O2) to water that occurs in phosphorylation. tmpzr1t_l9r_go_relaxed.owl photosynthetic ATP synthesis biological_process owl:Class GO:0032349 biolink:NamedThing positive regulation of aldosterone biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone. tmpzr1t_l9r_go_relaxed.owl stimulation of aldosterone biosynthetic process|upregulation of aldosterone biosynthetic process|activation of aldosterone biosynthetic process|up-regulation of aldosterone biosynthetic process|up regulation of aldosterone biosynthetic process biological_process owl:Class GO:0008013 biolink:NamedThing beta-catenin binding Binding to a catenin beta subunit. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033862 biolink:NamedThing UMP kinase activity Catalysis of the reaction: ATP + UMP = ADP + UDP. tmpzr1t_l9r_go_relaxed.owl ATP:UMP phosphotransferase activity|uridine monophosphate kinase activity|SmbA|UMPK|PyrH|UMP-kinase activity EC:2.7.4.22|RHEA:24400|MetaCyc:2.7.4.22-RXN molecular_function owl:Class GO:0009041 biolink:NamedThing uridylate kinase activity Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.7.4.22 molecular_function owl:Class GO:0019728 biolink:NamedThing peptidyl-allysine oxidation to 2-aminoadipic acid The oxidation of allysine to 2-aminoadipic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0370 biological_process owl:Class GO:0007088 biolink:NamedThing regulation of mitotic nuclear division Any process that modulates the frequency, rate or extent of mitosis. tmpzr1t_l9r_go_relaxed.owl regulation of mitosis biological_process owl:Class GO:0047627 biolink:NamedThing adenylylsulfatase activity Catalysis of the reaction: 5'-adenylyl sulfate + H(2)O = AMP + 2 H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl adenylylsulphatase activity|adenosine 5-phosphosulfate sulfohydrolase activity|adenylylsulfate sulfohydrolase activity MetaCyc:ADENYLYLSULFATASE-RXN|KEGG_REACTION:R00531|RHEA:17041|EC:3.6.2.1 molecular_function owl:Class GO:1900219 biolink:NamedThing positive regulation of apoptotic process involved in metanephric nephron tubule development Any process that activates or increases the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl upregulation of type I programmed cell death of metanephric nephron tubule development|positive regulation of apoptotic process of metanephric nephron tubule development|positive regulation of apoptotic programmed cell death of metanephric nephron tubule development|up-regulation of apoptosis of metanephric nephron tubule development|up regulation of apoptotic cell death of metanephric nephron tubule development|upregulation of apoptotic programmed cell death of metanephric nephron tubule development|up regulation of apoptotic programmed cell death of metanephric nephron tubule development|up-regulation of apoptotic program of metanephric nephron tubule development|up-regulation of apoptotic cell death of metanephric nephron tubule development|up-regulation of apoptotic programmed cell death of metanephric nephron tubule development|activation of apoptotic program of metanephric nephron tubule development|up-regulation of apoptotic process involved in metanephric nephron tubule development|up regulation of programmed cell death by apoptosis of metanephric nephron tubule development|upregulation of apoptosis of metanephric nephron tubule development|upregulation of apoptotic process of metanephric nephron tubule development|up regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|activation of apoptotic process of metanephric nephron tubule development|up-regulation of apoptotic process of metanephric nephron tubule development|up regulation of apoptotic process of metanephric nephron tubule development|up-regulation of type I programmed cell death of metanephric nephron tubule development|up regulation of apoptotic program of metanephric nephron tubule development|activation of apoptotic cell death of metanephric nephron tubule development|upregulation of programmed cell death by apoptosis of metanephric nephron tubule development|positive regulation of apoptotic program of metanephric nephron tubule development|activation of type I programmed cell death of metanephric nephron tubule development|up-regulation of programmed cell death by apoptosis of metanephric nephron tubule development|upregulation of apoptotic cell death of metanephric nephron tubule development|positive regulation of signaling (initiator) caspase activity of metanephric nephron tubule development|upregulation of signaling (initiator) caspase activity of metanephric nephron tubule development|activation of programmed cell death by apoptosis of metanephric nephron tubule development|activation of signaling (initiator) caspase activity of metanephric nephron tubule development|up regulation of apoptosis of metanephric nephron tubule development|upregulation of apoptotic process involved in metanephric nephron tubule development|positive regulation of type I programmed cell death of metanephric nephron tubule development|positive regulation of programmed cell death by apoptosis of metanephric nephron tubule development|activation of apoptotic programmed cell death of metanephric nephron tubule development|upregulation of apoptotic program of metanephric nephron tubule development|positive regulation of apoptotic cell death of metanephric nephron tubule development|up regulation of type I programmed cell death of metanephric nephron tubule development|activation of apoptosis of metanephric nephron tubule development|up regulation of apoptotic process involved in metanephric nephron tubule development|activation of apoptotic process involved in metanephric nephron tubule development|positive regulation of apoptosis of metanephric nephron tubule development|up-regulation of signaling (initiator) caspase activity of metanephric nephron tubule development yaf 2012-03-22T10:54:09Z biological_process owl:Class GO:0019608 biolink:NamedThing nicotine catabolic process The chemical reactions and pathways resulting in the breakdown of nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine. tmpzr1t_l9r_go_relaxed.owl nicotine catabolism|nicotine breakdown|nicotine degradation UM-BBD_pathwayID:nic|MetaCyc:P181-PWY biological_process owl:Class GO:0018933 biolink:NamedThing nicotine metabolic process The chemical reactions and pathways involving nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine. tmpzr1t_l9r_go_relaxed.owl nicotine metabolism biological_process owl:Class GO:0030249 biolink:NamedThing guanylate cyclase regulator activity Modulates the activity of guanylate cyclase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042933 biolink:NamedThing chrysobactin transmembrane transporter activity Enables the directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl chrysobactin transporter activity molecular_function owl:Class GO:0050861 biolink:NamedThing positive regulation of B cell receptor signaling pathway Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of B lymphocyte receptor signaling pathway|positive regulation of B-lymphocyte receptor signalling pathway|up-regulation of B cell receptor signaling pathway|positive regulation of B-cell receptor signaling pathway|positive regulation of B cell receptor signalling pathway|positive regulation of B-cell receptor signalling pathway|activation of B cell receptor signaling pathway|positive regulation of B lymphocyte receptor signalling pathway|positive regulation of B-lymphocyte receptor signaling pathway|upregulation of B cell receptor signaling pathway|up regulation of B cell receptor signaling pathway|stimulation of B cell receptor signaling pathway biological_process owl:Class GO:1901222 biolink:NamedThing regulation of NIK/NF-kappaB signaling Any process that modulates the frequency, rate or extent of NIK/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl NF-KB import into nucleus|NF-kappaB import into nucleus|regulation of non-canonical NF-KB signaling|regulation of p52-dependent NF-kappaB signaling|regulation of NIK/NF-kappaB cascade|regulation of noncanonical NF-kappaB signaling|regulation of NF-kappaB import into nucleus|regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway hjd 2012-08-06T20:27:17Z GO:0042345|GO:0042348 biological_process owl:Class GO:0009201 biolink:NamedThing ribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleoside triphosphate biosynthesis|ribonucleoside triphosphate formation|ribonucleoside triphosphate anabolism|ribonucleoside triphosphate synthesis biological_process owl:Class GO:0043164 biolink:NamedThing Gram-negative-bacterium-type cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall of the type found in Gram-negative bacteria. The cell wall is the rigid or semi-rigid envelope lying outside the cell membrane. tmpzr1t_l9r_go_relaxed.owl 1-2nm peptidoglycan-based cell wall biogenesis|cell wall formation|cell wall assembly|cell wall anabolism|cell wall synthesis|cell wall biosynthetic process biological_process owl:Class GO:0009330 biolink:NamedThing DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex Complex that possesses DNA topoisomerase II (double strand cut, ATP-hydrolyzing) activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050897 biolink:NamedThing cobalt ion binding Binding to a cobalt ion (Co). tmpzr1t_l9r_go_relaxed.owl Co ion binding|cobalt binding molecular_function owl:Class GO:0003755 biolink:NamedThing peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). tmpzr1t_l9r_go_relaxed.owl parvulin|cis-trans proline isomerase activity|peptidylproline cis-trans-isomerase activity|peptidyl-prolyl isomerase B reaction|PPIase activity|cyclophilin activity|rotamase activity|juglone-sensitive peptidyl-prolyl cis-trans isomerase activity|immunophilin|peptidylprolyl isomerase activity|peptide bond isomerase activity|FK506-sensitive peptidyl-prolyl cis-trans isomerase|cyclophilin-type peptidyl-prolyl cis-trans isomerase activity|juglone-sensitive cis-trans proline isomerase activity|peptidylprolyl cis-trans isomerase activity Reactome:R-HSA-2022073|RHEA:16237|Reactome:R-HSA-9626816|EC:5.2.1.8|MetaCyc:PEPTIDYLPROLYL-ISOMERASE-RXN GO:0042028|GO:0004752 molecular_function owl:Class GO:1904099 biolink:NamedThing negative regulation of protein O-linked glycosylation Any process that stops, prevents or reduces the frequency, rate or extent of protein O-linked glycosylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein amino acid O-linked glycosylation|inhibition of protein amino acid O-linked glycosylation|down regulation of protein amino acid O-linked glycosylation|inhibition of protein O-linked glycosylation|down-regulation of protein amino acid O-linked glycosylation|down regulation of protein O-linked glycosylation|downregulation of protein amino acid O-linked glycosylation|downregulation of protein O-linked glycosylation|down-regulation of protein O-linked glycosylation krc 2015-03-27T16:10:04Z biological_process owl:Class GO:1904098 biolink:NamedThing regulation of protein O-linked glycosylation Any process that modulates the frequency, rate or extent of protein O-linked glycosylation. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid O-linked glycosylation krc 2015-03-27T16:09:58Z biological_process owl:Class GO:0060161 biolink:NamedThing positive regulation of dopamine receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the dopamine receptor protein signaling pathway. A dopamine receptor signaling pathway is the series of molecular signals generated as a consequence of a dopamine receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl positive regulation of dopamine receptor signalling pathway biological_process owl:Class GO:1904774 biolink:NamedThing negative regulation of ubiquinone biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ubiquinone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of coenzyme Q6 biosynthesis|inhibition of coenzyme Q10 biosynthetic process|negative regulation of coenzyme Q10 biosynthesis|inhibition of ubiquinone biosynthetic process|down regulation of coenzyme Q biosynthetic process|down-regulation of coenzyme Q8 biosynthetic process|negative regulation of ubiquinone anabolism|downregulation of coenzyme Q6 biosynthetic process|down regulation of coenzyme Q10 biosynthesis|inhibition of coenzyme Q biosynthesis|down-regulation of coenzyme Q10 biosynthesis|downregulation of coenzyme Q biosynthetic process|down regulation of ubiquinone biosynthetic process|downregulation of coenzyme Q10 biosynthesis|downregulation of ubiquinone biosynthesis|downregulation of coenzyme Q10 biosynthetic process|down regulation of ubiquinone biosynthesis|down-regulation of coenzyme Q8 biosynthesis|negative regulation of ubiquinone biosynthesis|inhibition of ubiquinone formation|down-regulation of coenzyme Q biosynthetic process|negative regulation of coenzyme Q9 biosynthetic process|downregulation of ubiquinone anabolism|negative regulation of ubiquinone synthesis|inhibition of coenzyme Q10 biosynthesis|down regulation of coenzyme Q9 biosynthesis|negative regulation of coenzyme Q6 biosynthetic process|inhibition of coenzyme Q9 biosynthesis|down-regulation of ubiquinone biosynthesis|downregulation of ubiquinone biosynthetic process|down-regulation of coenzyme Q10 biosynthetic process|down regulation of coenzyme Q8 biosynthesis|down-regulation of coenzyme Q biosynthesis|down regulation of coenzyme Q10 biosynthetic process|down-regulation of ubiquinone formation|inhibition of ubiquinone biosynthesis|down regulation of ubiquinone formation|negative regulation of coenzyme Q8 biosynthesis|down-regulation of ubiquinone biosynthetic process|negative regulation of coenzyme Q10 biosynthetic process|downregulation of ubiquinone formation|inhibition of coenzyme Q biosynthetic process|downregulation of coenzyme Q8 biosynthetic process|down regulation of coenzyme Q biosynthesis|inhibition of coenzyme Q8 biosynthetic process|down regulation of coenzyme Q6 biosynthesis|down regulation of coenzyme Q9 biosynthetic process|down-regulation of coenzyme Q9 biosynthesis|inhibition of coenzyme Q6 biosynthetic process|inhibition of ubiquinone anabolism|downregulation of coenzyme Q9 biosynthetic process|negative regulation of coenzyme Q biosynthesis|down regulation of ubiquinone anabolism|negative regulation of coenzyme Q6 biosynthesis|down-regulation of coenzyme Q6 biosynthesis|downregulation of coenzyme Q biosynthesis|down regulation of coenzyme Q8 biosynthetic process|negative regulation of coenzyme Q8 biosynthetic process|down regulation of coenzyme Q6 biosynthetic process|negative regulation of ubiquinone formation|down-regulation of ubiquinone synthesis|inhibition of ubiquinone synthesis|down-regulation of ubiquinone anabolism|downregulation of ubiquinone synthesis|inhibition of coenzyme Q9 biosynthetic process|downregulation of coenzyme Q8 biosynthesis|negative regulation of coenzyme Q9 biosynthesis|down-regulation of coenzyme Q6 biosynthetic process|inhibition of coenzyme Q8 biosynthesis|down regulation of ubiquinone synthesis|negative regulation of coenzyme Q biosynthetic process|downregulation of coenzyme Q9 biosynthesis|inhibition of coenzyme Q6 biosynthesis|down-regulation of coenzyme Q9 biosynthetic process sl 2015-10-28T21:21:20Z biological_process owl:Class GO:0099020 biolink:NamedThing perinuclear endoplasmic reticulum lumen The volume enclosed by the membranes of the perinuclear endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005788 biolink:NamedThing endoplasmic reticulum lumen The volume enclosed by the membranes of the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl cisternal lumen|endoplasmic reticulum cisterna|ER lumen|ER cisterna GO:0016022 cellular_component owl:Class GO:0097088 biolink:NamedThing interleukin-17F production The appearance of interleukin-17F due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-17F production pr 2011-06-23T11:32:59Z biological_process owl:Class GO:0010862 biolink:NamedThing positive regulation of pathway-restricted SMAD protein phosphorylation Any process that increases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080054 biolink:NamedThing low-affinity nitrate transmembrane transporter activity Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity nitrate transmembrane transporter activity molecular_function owl:Class GO:0060314 biolink:NamedThing regulation of ryanodine-sensitive calcium-release channel activity Any process that modulates the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019525 biolink:NamedThing keto-D-gluconate metabolic process The chemical reactions and pathways involving keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl keto-D-gluconate metabolism biological_process owl:Class GO:0071455 biolink:NamedThing cellular response to hyperoxia Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension. tmpzr1t_l9r_go_relaxed.owl cellular response to increased oxygen tension|cellular response to hyperoxic stress mah 2009-12-16T04:44:41Z biological_process owl:Class GO:0052546 biolink:NamedThing cell wall pectin metabolic process The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. tmpzr1t_l9r_go_relaxed.owl pectin metabolism during cell wall biogenesis|cellulose and pectin-containing cell wall pectin metabolic process|plant-type cell wall pectin metabolic process|cell wall pectin metabolism biological_process owl:Class GO:0034711 biolink:NamedThing inhibin binding Binding to an inhibin monomer, any of the polypeptides that combine to form activin and inhibin dimers. tmpzr1t_l9r_go_relaxed.owl inhibin alpha binding|inhibin beta-B binding|inhibin monomer binding|inhibin beta-A binding GO:0048187|GO:0034712|GO:0048186 molecular_function owl:Class GO:0099188 biolink:NamedThing postsynaptic cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising cytoskeletal filaments and their associated proteins in the postsynaptic cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T15:06:57Z biological_process owl:Class GO:0060025 biolink:NamedThing regulation of synaptic activity Any process that modulates the frequency, rate or extent of synaptic activity, the controlled release of neurotransmitters into the synaptic cleft and their subsequent detection by a postsynaptic cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042305 biolink:NamedThing specification of segmental identity, mandibular segment The specification of the characteristic structures of the mandibular segment following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'mandibular segment ; FBbt:00000012'. biological_process owl:Class GO:0004138 biolink:NamedThing deoxyguanosine kinase activity Catalysis of the reaction: 2'-deoxyguanosine + ATP = ADP + dGMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl deoxyguanosine kinase (phosphorylating)|2'-deoxyguanosine kinase activity|(dihydroxypropoxymethyl)guanine kinase activity|ATP:deoxyguanosine 5'-phosphotransferase activity|NTP-deoxyguanosine 5'-phosphotransferase activity KEGG_REACTION:R01967|EC:2.7.1.113|RHEA:19201|MetaCyc:DEOXYGUANOSINE-KINASE-RXN molecular_function owl:Class GO:0019136 biolink:NamedThing deoxynucleoside kinase activity Catalysis of the reaction: ATP + 2'-deoxynucleoside = ADP + 2'-deoxynucleoside 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:deoxynucleoside 5'-phosphotransferase activity|multifunctional deoxynucleoside kinase activity|D. melanogaster deoxynucleoside kinase activity|ms-dNK|multispecific deoxynucleoside kinase activity|Ms-dNK activity|Dm-dNK|multisubstrate deoxyribonucleoside kinase activity MetaCyc:2.7.1.145-RXN|RHEA:12140|EC:2.7.1.145 molecular_function owl:Class GO:1905841 biolink:NamedThing response to oxidopamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidopamine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2017-01-19T09:49:03Z biological_process owl:Class GO:0072342 biolink:NamedThing response to anion stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of anion stress, an increase or decrease in the concentration of negatively charged ions in the environment. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-05T02:25:28Z biological_process owl:Class GO:0047009 biolink:NamedThing 3-alpha-hydroxy-5-beta-androstane-17-one 3-alpha-dehydrogenase activity Catalysis of the reaction: NAD+ + 3-alpha-hydroxy-5-beta-androstane-17-one = NADH + H+ + 5-beta-androstane-3,17-dione. tmpzr1t_l9r_go_relaxed.owl 3alpha-hydroxy-5beta-steroid:NAD+ 3-oxidoreductase activity|etiocholanolone 3-alpha-dehydrogenase activity|3alpha-hydroxy-5beta-steroid dehydrogenase activity|etiocholanolone 3alpha-dehydrogenase activity|3alpha-hydroxy-5beta-androstane-17-one 3alpha-dehydrogenase activity EC:1.1.1.152|MetaCyc:1.1.1.152-RXN|RHEA:10356 molecular_function owl:Class GO:0019578 biolink:NamedThing aldaric acid biosynthetic process The chemical reactions and pathways resulting in the formation of aldaric acid, any dicarboxylic acid formed by oxidation of by the terminal groups of an aldose to carboxyl group. tmpzr1t_l9r_go_relaxed.owl aldaric acid formation|aldaric acid biosynthesis|aldaric acid anabolism|aldaric acid synthesis biological_process owl:Class GO:0042823 biolink:NamedThing pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl active vitamin B6 biosynthesis|pyridoxal phosphate formation|pyridoxal phosphate biosynthesis|active vitamin B6 biosynthetic process|pyridoxal phosphate anabolism|pyridoxal phosphate synthesis MetaCyc:PWY0-845 biological_process owl:Class GO:1902199 biolink:NamedThing 3-methylbut-2-enoyl-CoA(4-) catabolic process The chemical reactions and pathways resulting in the breakdown of 3-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 3-methylbut-2-enoyl-CoA(4-) catabolism|3-methylbut-2-enoyl-CoA(4-) degradation|3-methylbut-2-enoyl-CoA(4-) breakdown ms 2013-06-06T09:56:16Z biological_process owl:Class GO:0032571 biolink:NamedThing response to vitamin K Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin K stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036046 biolink:NamedThing protein demalonylation The removal of a malonyl group (CO-CH2-CO), from an amino acid residue within a protein or peptide. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T09:38:26Z biological_process owl:Class GO:2001178 biolink:NamedThing positive regulation of mediator complex assembly Any process that activates or increases the frequency, rate or extent of mediator complex assembly. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-02T11:22:27Z biological_process owl:Class GO:0060195 biolink:NamedThing negative regulation of antisense RNA transcription Any process that decreases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060194 biolink:NamedThing regulation of antisense RNA transcription Any process that modulates the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009778 biolink:NamedThing cyclic photosynthetic phosphorylation A photosynthetic phosphorylation process in which ATP synthesis is driven by a proton gradient generated across the thylakoid membrane. Involves only photosystem I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035839 biolink:NamedThing non-growing cell tip A cell tip at which no growth takes place. For example, in fission yeast the cell end newly formed by cell division does not grow immediately upon its formation, and lacks actin cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl non-growing cell end|new cell end bf 2011-05-06T01:32:21Z cellular_component owl:Class GO:2000693 biolink:NamedThing positive regulation of seed maturation Any process that activates or increases the frequency, rate or extent of seed maturation. tmpzr1t_l9r_go_relaxed.owl dhl 2011-05-13T06:41:46Z biological_process owl:Class GO:0086085 biolink:NamedThing cell adhesive protein binding involved in SA cardiac muscle cell-atrial cardiac muscle cell communication Binding to a protein or protein complex that results in the connection of an SA cardiomyocyte with an atrial cardiomyocyte and contributes to the communication between the two cells. tmpzr1t_l9r_go_relaxed.owl cell adhesive protein binding involved in SA cardiomyocyte-atrial cardiomyocyte communication dph 2011-11-22T11:15:07Z molecular_function owl:Class GO:0002827 biolink:NamedThing positive regulation of T-helper 1 type immune response Any process that activates or increases the frequency, rate, or extent of a T-helper 1 type immune response. tmpzr1t_l9r_go_relaxed.owl activation of T-helper 1 type immune response|stimulation of T-helper 1 type immune response|up regulation of T-helper 1 type immune response|upregulation of T-helper 1 type immune response|up-regulation of T-helper 1 type immune response biological_process owl:Class GO:0046680 biolink:NamedThing response to DDT Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a DDT stimulus. DDT, dichlorodiphenyltrichloroethane, is a chlorinated hydrocarbon pesticide moderately toxic to humans and other animals. tmpzr1t_l9r_go_relaxed.owl DDT susceptibility/resistance|DDT resistance biological_process owl:Class GO:0140629 biolink:NamedThing small conductance calcium-activated potassium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a small conductance calcium-activated potassium channel. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21175 pg 2021-03-25T09:53:57Z molecular_function owl:Class GO:0019870 biolink:NamedThing potassium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a potassium channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044079 biolink:NamedThing modulation by symbiont of host neurotransmitter secretion Any process in which a symbiont organism modulates the frequency, rate or extent of the regulated release of a neurotransmitter from a cell in its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of host neurotransmitter secretion by symbiont|modification by symbiont of host neurotransmitter secretion|regulation by symbiont of host neurotransmitter secretion biological_process owl:Class GO:0047158 biolink:NamedThing sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity Catalysis of the reaction: 2 1-O-sinapoyl-beta-D-glucose = 1,2-di-O-sinapoyl-beta-D-glucose + D-glucose. tmpzr1t_l9r_go_relaxed.owl 1-(hydroxycinnamoyl)-glucose:1-(hydroxycinnamoyl)-glucose hydroxycinnamoyltransferase activity|1-O-(4-hydroxy-3,5-dimethoxycinnamoyl)-beta-D-glucoside:1-O-(4-hydroxy-3,5-dimethoxycinnamoyl-beta-D-glucoside 1-O-sinapoyltransferase activity|hydroxycinnamoylglucose-hydroxycinnamoylglucose hydroxycinnamoyltransferase activity EC:2.3.1.103|RHEA:22664|MetaCyc:2.3.1.103-RXN|KEGG_REACTION:R00063 molecular_function owl:Class GO:0016753 biolink:NamedThing O-sinapoyltransferase activity Catalysis of the transfer of a sinapoyl group to an oxygen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060917 biolink:NamedThing regulation of (1->6)-beta-D-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->6)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of 1,6-beta-glucan biosynthetic process dph 2009-09-18T02:15:01Z biological_process owl:Class GO:0035597 biolink:NamedThing N6-isopentenyladenosine methylthiotransferase activity Catalysis of the methylthiolation (-SCH3 addition) at the C2 of the adenosine ring of N6-isopentenyladenosine (i6A) in tRNA, to form 2-methylthio-N6-isopentenyladenosine (ms2i6A). tmpzr1t_l9r_go_relaxed.owl i6A methylthiotransferase activity bf 2010-11-12T01:26:58Z molecular_function owl:Class GO:0072491 biolink:NamedThing toluene-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of toluene, methylbenzene (formula C7H8), or any of its derivatives. tmpzr1t_l9r_go_relaxed.owl toluene-containing compound catabolism|toluene-containing compound breakdown|toluene and derivative catabolic process|toluene-containing compound degradation mah 2010-12-14T03:51:03Z biological_process owl:Class GO:0030370 biolink:NamedThing intercellular adhesion molecule-3 receptor binding Binding to a receptor for intercellular adhesion molecule-3 (ICAM-3), such as DC-SIGN and LFA-1. tmpzr1t_l9r_go_relaxed.owl intercellular adhesion molecule-3 receptor ligand|ICAM-3 receptor binding|ICAM-3 receptor ligand molecular_function owl:Class GO:0015345 biolink:NamedThing ferric enterobactin:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ferric enterobactin(out) + H+(out) = ferric enterobactin(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl ferric enterobactin:hydrogen symporter activity|ferric-enterobactin:proton symporter activity molecular_function owl:Class GO:0048633 biolink:NamedThing positive regulation of skeletal muscle tissue growth Any process that activates, maintains or increases the rate of skeletal muscle growth. tmpzr1t_l9r_go_relaxed.owl up-regulation of skeletal muscle growth|stimulation of skeletal muscle growth|up regulation of skeletal muscle growth|activation of skeletal muscle growth|upregulation of skeletal muscle growth biological_process owl:Class GO:1905596 biolink:NamedThing negative regulation of low-density lipoprotein particle receptor binding Any process that stops, prevents or reduces the frequency, rate or extent of low-density lipoprotein particle receptor binding. tmpzr1t_l9r_go_relaxed.owl down regulation of low-density lipoprotein particle receptor binding|inhibition of low-density lipoprotein receptor binding|inhibition of low-density lipoprotein particle receptor binding|down-regulation of low-density lipoprotein receptor binding|down regulation of LDL receptor binding|down regulation of low-density lipoprotein receptor binding|down-regulation of LDL receptor binding|downregulation of LDL receptor binding|negative regulation of low-density lipoprotein receptor binding|down-regulation of low-density lipoprotein particle receptor binding|downregulation of low-density lipoprotein particle receptor binding|negative regulation of LDL receptor binding|inhibition of LDL receptor binding|downregulation of low-density lipoprotein receptor binding nc 2016-10-26T10:57:31Z biological_process owl:Class GO:1905302 biolink:NamedThing negative regulation of macropinocytosis Any process that stops, prevents or reduces the frequency, rate or extent of macropinocytosis. tmpzr1t_l9r_go_relaxed.owl down-regulation of macropinocytosis|inhibition of macropinocytosis|downregulation of macropinocytosis|down regulation of macropinocytosis pad 2016-07-04T14:16:41Z biological_process owl:Class GO:1905228 biolink:NamedThing positive regulation of adhesion of symbiont to host epithelial cell Any process that activates or increases the frequency, rate or extent of adhesion of symbiont to host epithelial cell. tmpzr1t_l9r_go_relaxed.owl upregulation of adhesion of symbiont to host epithelial cell|activation of adhesion of symbiont to host epithelial cell|up regulation of adhesion of symbiont to host epithelial cell|up-regulation of adhesion of symbiont to host epithelial cell pga 2016-06-07T13:15:24Z biological_process owl:Class GO:0062022 biolink:NamedThing mitotic cohesin ssDNA (lagging strand) loading The ATP-dependent protein localization to chromatin by which a cohesin ring complex is topologically linked to ssDNA (lagging strand) which is already linked to a dsDNA (leading strand) molecule as part of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl second-DNA capture dph 2018-04-06T13:06:36Z biological_process owl:Class GO:0010801 biolink:NamedThing negative regulation of peptidyl-threonine phosphorylation Any process that decreases the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047942 biolink:NamedThing glutamate-ethylamine ligase activity Catalysis of the reaction: L-glutamate + ATP + ethylamine = N(5)-ethyl-L-glutamine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl N5-ethylglutamine synthetase activity|N(5)-ethyl-L-glutamine synthetase activity|theanine synthetase activity|L-glutamate:ethylamine ligase (ADP-forming)|N5-ethyl-L-glutamine synthetase activity KEGG_REACTION:R02929|MetaCyc:GLUTAMATE--ETHYLAMINE-LIGASE-RXN|RHEA:20525|EC:6.3.1.6 molecular_function owl:Class GO:0031302 biolink:NamedThing intrinsic component of endosome membrane The component of the endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to endosome membrane cellular_component owl:Class GO:0048662 biolink:NamedThing negative regulation of smooth muscle cell proliferation Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of SMC proliferation|down regulation of smooth muscle cell proliferation|downregulation of smooth muscle cell proliferation|inhibition of smooth muscle cell proliferation|down-regulation of smooth muscle cell proliferation biological_process owl:Class GO:0102871 biolink:NamedThing 1-16:0-2-18:1-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-16:0-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-palmitoyl-2-linoleoyl-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8360|EC:1.14.19.22 molecular_function owl:Class GO:0021653 biolink:NamedThing rhombomere 1 structural organization The process that contributes to creating the structural organization of rhombomere 1. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 1 structural organisation biological_process owl:Class GO:0051678 biolink:NamedThing pullulan catabolic process The chemical reactions and pathways resulting in the breakdown of pullulan, a neutral linear polysaccharide composed of repeating units of maltotriose joined by alpha-(1,6)-linkages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047931 biolink:NamedThing glucosamine kinase activity Catalysis of the reaction: ATP + D-glucosamine = ADP + D-glucosamine phosphate. tmpzr1t_l9r_go_relaxed.owl glucosamine kinase (phosphorylating)|ATP:D-glucosamine phosphotransferase activity|aminodeoxyglucose kinase activity|ATP:2-amino-2-deoxy-D-glucose-6-phosphotransferase activity RHEA:10948|MetaCyc:GLUCOSAMINE-KINASE-RXN|EC:2.7.1.8 molecular_function owl:Class GO:0106379 biolink:NamedThing 8-oxo-(d)RTP hydrolase activity Catalysis of the reaction: 8-oxo-(d)RTP + H20 = 8-oxo-(d)RMP + diphosphate + H+. tmpzr1t_l9r_go_relaxed.owl hjd 2021-05-26T14:36:55Z molecular_function owl:Class GO:0035179 biolink:NamedThing larval turning behavior Fine-tuning the spatial position of a larva in response to variability in their environment. For example, reorientation of a larva in the direction of a food source. tmpzr1t_l9r_go_relaxed.owl larval turning behaviour biological_process owl:Class GO:0060761 biolink:NamedThing negative regulation of response to cytokine stimulus Any process that decreases the rate, frequency, or extent of a response to cytokine stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:59:57Z biological_process owl:Class GO:0032664 biolink:NamedThing regulation of interleukin-20 production Any process that modulates the frequency, rate, or extent of interleukin-20 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-20 biosynthetic process|regulation of IL-20 production GO:0045387 biological_process owl:Class GO:1990184 biolink:NamedThing amino acid transport complex A heteromeric protein complex consisting of a multi-transmembrane spanning subunit (the light chain) and a type II glycoprotein subunit (the heavy chain) that functions to transport amino acids across a plasma membrane. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-11T15:02:16Z cellular_component owl:Class GO:1902573 biolink:NamedThing positive regulation of serine-type peptidase activity Any process that activates or increases the frequency, rate or extent of serine-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of serine-type peptidase activity|up-regulation of serine protease activity|activation of serine protease activity|activation of serine-type peptidase activity|up-regulation of serine-type peptidase activity|up regulation of serine protease activity|up regulation of serine-type peptidase activity|positive regulation of serine protease activity|upregulation of serine protease activity krc 2013-12-10T18:17:16Z biological_process owl:Class GO:0031932 biolink:NamedThing TORC2 complex A protein complex that contains at least TOR (target of rapamycin) and Rictor (rapamycin-insensitive companion of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of PKB (also called AKT). In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p. tmpzr1t_l9r_go_relaxed.owl rapamycin and nutrient-insensitive TOR complex|TORC2|TORC 2 complex|mTORC2|TOR complex 2 Wikipedia:MTORC1 cellular_component owl:Class GO:0038201 biolink:NamedThing TOR complex A protein complex that contains at least TOR (target of rapamycin) in complex with other signaling components. Mediates the phosphorylation and activation of downstream signaling components including PKB (AKT) or S6K. tmpzr1t_l9r_go_relaxed.owl TOR signaling complex|target of rapamycin complex|mTOR complex bf 2013-12-09T14:38:09Z cellular_component owl:Class GO:0016157 biolink:NamedThing sucrose synthase activity Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. tmpzr1t_l9r_go_relaxed.owl sucrose-UDP glucosyltransferase activity|sucrose synthetase activity|uridine diphosphoglucose-fructose glucosyltransferase activity|sucrose-uridine diphosphate glucosyltransferase activity|NDP-glucose:D-fructose 2-alpha-D-glucosyltransferase activity|UDP-glucose-fructose glucosyltransferase activity|UDPglucose-fructose glucosyltransferase activity MetaCyc:SUCROSE-SYNTHASE-RXN|EC:2.4.1.13 molecular_function owl:Class GO:1904602 biolink:NamedThing serotonin-activated cation-selective channel complex A protein complex which is capable of serotonin-activated cation-selective channel activity. Mainly found in pre- and postsynaptic membranes of the brain and gastrointestinal tract. Depending on its location it transports Ca2+, Mg2+, Na+ or K+. It is always a pentamer, containing at least the 5HT3A subunit forming 5HT3A homopentamers or 5HT3A/B heteropentamers. In human, 5HT3A/C, A/D and A/E heteropentamers also exist. tmpzr1t_l9r_go_relaxed.owl 5HT3 receptor complex|serotonin receptor complex|5-HT3 receptor complex|5-hydroxytryptamine receptor 3 complex|5-HT-3 receptor complex https://github.com/geneontology/go-ontology/issues/12942 An example of this is HTR3A in human (P46098) in PMID:16116092 (inferred from direct assay). bhm 2015-08-26T13:19:49Z cellular_component owl:Class GO:0097272 biolink:NamedThing ammonium homeostasis Any biological process involved in the maintenance of an internal steady state of ammonium. tmpzr1t_l9r_go_relaxed.owl ammonia homeostasis pr 2012-03-22T02:51:22Z biological_process owl:Class GO:1903248 biolink:NamedThing regulation of citrulline biosynthetic process Any process that modulates the frequency, rate or extent of citrulline biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of citrulline formation|regulation of citrulline synthesis|regulation of citrulline biosynthesis|regulation of citrulline anabolism rl 2014-08-04T15:24:34Z biological_process owl:Class GO:0038032 biolink:NamedThing termination of G protein-coupled receptor signaling pathway The signaling process in which G protein-coupled receptor signaling is brought to an end. For example, through the action of GTPase-activating proteins (GAPs) that act to accelerate hydrolysis of GTP to GDP on G-alpha proteins, thereby terminating the transduced signal. tmpzr1t_l9r_go_relaxed.owl termination of G-protein coupled receptor signalling pathway|termination of GPCR signaling pathway|termination of G-protein coupled receptor signaling pathway bf 2011-09-16T10:31:21Z biological_process owl:Class GO:1904519 biolink:NamedThing protein localization to microtubule minus-end A process in which a protein is transported to, or maintained in, a location at a microtubule minus-end. tmpzr1t_l9r_go_relaxed.owl protein localization in microtubule minus-end|protein localisation to microtubule minus-end|protein localisation in microtubule minus-end mah 2015-07-29T14:46:11Z biological_process owl:Class GO:0102310 biolink:NamedThing dTDP-(2R,6S)-6-hydroxy-2-methyl-3-oxo-3,6-dihydro-2H-pyran-4-olate 3-ketoreductase (dTDP-4-dehydro-2,6-dideoxy-alpha-D-allose-forming) activity Catalysis of the reaction: dTDP-4-dehydro-2,6-dideoxy-alpha-D-allose + NAD(P) <=> dTDP-(2R,6S)-6-hydroxy-2-methyl-3-oxo-3,6-dihydro-2H-pyran-4-olate + 2 H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12940 molecular_function owl:Class GO:2000919 biolink:NamedThing negative regulation of glucuronoarabinoxylan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of glucuronoarabinoxylan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucuronoarabinoxylan catabolism tt 2011-08-01T12:36:53Z biological_process owl:Class GO:0086052 biolink:NamedThing membrane repolarization during SA node cell action potential The process in which an SA node cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl membrane repolarization involved in regulation of SA node cardiac muscle cell action potential|membrane repolarization involved in regulation of SAN cardiac muscle cell action potential|membrane repolarization involved in regulation of sinus node cardiac muscle cell action potential|membrane repolarization involved in regulation of sinoatrial node cardiac muscle cell action potential dph 2011-11-16T11:54:12Z biological_process owl:Class GO:0008938 biolink:NamedThing nicotinate N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + nicotinate = N-methylnicotinate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl furanocoumarin 8-O-methyltransferase activity|S-adenosyl-L-methionine:nicotinate N-methyltransferase activity EC:2.1.1.7|RHEA:20241|MetaCyc:NICOTINATE-N-METHYLTRANSFERASE-RXN|KEGG_REACTION:R01721 molecular_function owl:Class GO:0050557 biolink:NamedThing deacetylipecoside synthase activity Catalysis of the reaction: deacetylipecoside + H(2)O = dopamine + secologanin. tmpzr1t_l9r_go_relaxed.owl deacetylipecoside dopamine-lyase activity|deacetylipecoside dopamine-lyase (secologanin-forming) EC:4.3.3.4|MetaCyc:4.3.3.4-RXN|KEGG_REACTION:R05749|RHEA:12296 molecular_function owl:Class GO:0010858 biolink:NamedThing calcium-dependent protein kinase regulator activity Modulates the activity of a calcium-dependent protein kinase, an enzyme which phosphorylates a protein in a calcium-dependent manner. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042610 biolink:NamedThing CD8 receptor binding Binding to a CD8, a receptor found on the surface of thymocytes and cytotoxic and suppressor T-lymphocytes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102396 biolink:NamedThing 9-cis-10'-apo-beta-carotenal cleavage oxygenase activity Catalysis of the reaction: 9-cis-10'-apo-beta-carotenal + 2 O2 <=> carlactone + (2E,4E,6E)-7-hydroxy-4-methylhepta-2,4,6-trienal. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.69|MetaCyc:RXN-13643|RHEA:34403 molecular_function owl:Class GO:0062158 biolink:NamedThing chloride:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: chloride(out) + proton(in) = chloride(in) + proton(out). tmpzr1t_l9r_go_relaxed.owl dph 2019-09-24T19:26:32Z molecular_function owl:Class GO:0000752 biolink:NamedThing agglutination involved in conjugation with cellular fusion The aggregation or adhesion of compatible mating types via complementary cell-cell interactions during conjugation with cellular fusion of a unicellular organism. An example of this process is agglutination in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion during mating|agglutination|cell-cell adhesion during conjugation with cellular fusion GO:0007334 biological_process owl:Class GO:0060635 biolink:NamedThing positive regulation of (1->3)-beta-D-glucan biosynthetic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl positive regulation of 1,3-beta-D-glucan biosynthetic process dph 2009-05-18T03:22:44Z biological_process owl:Class GO:1903221 biolink:NamedThing regulation of mitotic recombination involved in replication fork processing Any process that modulates the frequency, rate or extent of mitotic recombination involved in replication fork processing. Regulation of mitotic recombination contributes to replication fork processing by preventing recombination between inappropriate homologous sequences. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic recombination involved in collapsed replication fork processing|prevention of genomic instability induced by DNA replication fork arrest|regulation of mitotic recombination involved in replication fork restart|regulation of mitotic recombination involved in replication restart|regulation of mitotic recombination involved in recovery from replication fork arrest|regulation of mitotic recombination involved in recovery from replication fork stalling mah 2014-07-24T13:30:21Z biological_process owl:Class GO:0070485 biolink:NamedThing dehydro-D-arabinono-1,4-lactone biosynthetic process The chemical reactions and pathways resulting in the formation of dehydro-D-arabinono-1,4-lactone, the gamma-lactone (5R)-3,4-dihydroxy-5-(hydroxymethyl)furan-2(5H)-one. tmpzr1t_l9r_go_relaxed.owl dehydro-D-arabinono-1,4-lactone biosynthesis|dehydro-D-arabinono-1,4-lactone anabolism|dehydro-D-arabinono-1,4-lactone formation|dehydro-D-arabinono-1,4-lactone synthesis biological_process owl:Class GO:0071627 biolink:NamedThing integral component of fungal-type vacuolar membrane The component of the fungal-type vacuole membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to fungal-type vacuolar membrane mah 2010-02-10T03:45:23Z cellular_component owl:Class GO:0030267 biolink:NamedThing glyoxylate reductase (NADP+) activity Catalysis of the reaction: glycolate + NADP+ = glyoxylate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH-glyoxylate reductase activity|glyoxylate reductase (NADP+)|glycolate:NADP+ oxidoreductase activity Reactome:R-HSA-389826|Wikipedia:Glyoxylate_reductase_(NADP+)|RHEA:10992|MetaCyc:GLYOXYLATE-REDUCTASE-NADP+-RXN|EC:1.1.1.79 molecular_function owl:Class GO:0106345 biolink:NamedThing glyoxylate reductase activity Catalysis of the reaction: glycolate + NAD(P)+ = glyoxylate + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl hjd 2020-12-08T14:14:31Z molecular_function owl:Class GO:0071365 biolink:NamedThing cellular response to auxin stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:10:22Z biological_process owl:Class GO:0018929 biolink:NamedThing methyl fluoride metabolic process The chemical reactions and pathways involving methyl fluoride, fluorine-substituted methane, a gaseous halogenated hydrocarbon that has been investigated as an inhibitor of methanotrophy and nitrification in soils. tmpzr1t_l9r_go_relaxed.owl methyl fluoride metabolism UM-BBD_pathwayID:mf biological_process owl:Class GO:0010291 biolink:NamedThing carotene beta-ring hydroxylase activity Catalysis of the reaction: a carotene + a reduced electron acceptor + O2 = C3-hydroxylated carotene + an oxidized electron acceptor + H2O. This is a general reaction to represent the C3 hydroxylation of the beta ring of a carotene. tmpzr1t_l9r_go_relaxed.owl beta-carotene hydroxylase activity GO:0042411 molecular_function owl:Class GO:0140485 biolink:NamedThing 5-aminolevulinic acid transmembrane transporter activity Enables the transfer of 5-aminolevulinic acid from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19527 RHEA:64816 pg 2020-06-29T09:02:26Z molecular_function owl:Class GO:0102849 biolink:NamedThing 1-18:2-2-18:3-digalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-18:3-digalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-18:3-digalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.35|MetaCyc:RXN-8314 molecular_function owl:Class GO:0047962 biolink:NamedThing glycine N-benzoyltransferase activity Catalysis of the reaction: benzoyl-CoA + glycine = N-benzoylglycine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA:glycine N-benzoyltransferase activity|benzoyl-CoA:glycine N-acyltransferase activity|benzoyl CoA-amino acid N-acyltransferase activity EC:2.3.1.71|Reactome:R-HSA-159574|RHEA:18493|MetaCyc:GLYCINE-N-BENZOYLTRANSFERASE-RXN|Reactome:R-HSA-159566|KEGG_REACTION:R02452 molecular_function owl:Class GO:0004766 biolink:NamedThing spermidine synthase activity Catalysis of the reaction: S-adenosylmethioninamine + putrescine = 5'-methylthioadenosine + spermidine. tmpzr1t_l9r_go_relaxed.owl aminopropyltransferase activity|spermidine synthetase activity|putrescine aminopropyltransferase activity|SpeE|S-adenosylmethioninamine:putrescine 3-aminopropyltransferase activity RHEA:12721|Reactome:R-HSA-351215|MetaCyc:SPERMIDINESYN-RXN|EC:2.5.1.16 molecular_function owl:Class GO:0034230 biolink:NamedThing enkephalin processing The formation of mature enkephalin, a pentapeptide hormone involved in regulating pain and nociception in the body by proteolytic processing of enkephalin propeptide. tmpzr1t_l9r_go_relaxed.owl peptide enkephalin processing|enkephalin formation|peptide enkephalin formation biological_process owl:Class GO:1990712 biolink:NamedThing HFE-transferrin receptor complex A protein complex containing at least HFE and a transferrin receptor (either TFR1/TFRC or TFR2), proposed to play a role in the sensing of transferrin-bound Fe (Fe2-Tf) on the plasma membrane to regulate hepcidin transcription. tmpzr1t_l9r_go_relaxed.owl pr 2015-03-26T13:03:27Z cellular_component owl:Class GO:0018493 biolink:NamedThing formylmethanofuran dehydrogenase activity Catalysis of the reaction: N-formylmethanofuran + A + H(2)O + H(+) = AH(2) + CO(2) + methanofuran. tmpzr1t_l9r_go_relaxed.owl formylmethanofuran:acceptor oxidoreductase activity|formylmethanofuran:(acceptor) oxidoreductase activity RHEA:19841|UM-BBD_reactionID:r0345|KEGG_REACTION:R03015|EC:1.2.7.12|MetaCyc:FORMYLMETHANOFURAN-DEHYDROGENASE-RXN molecular_function owl:Class GO:0045958 biolink:NamedThing positive regulation of complement activation, alternative pathway Any process that activates or increases the frequency, rate or extent of complement activation by the alternative pathway. tmpzr1t_l9r_go_relaxed.owl stimulation of complement activation, alternative pathway|positive regulation of complement cascade, alternative pathway|up regulation of complement activation, alternative pathway|upregulation of complement activation, alternative pathway|activation of complement activation, alternative pathway|up-regulation of complement activation, alternative pathway biological_process owl:Class GO:0031213 biolink:NamedThing RSF complex An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals) and an RSF1 homolog. It mediates nucleosome deposition and generates regularly spaced nucleosome arrays. In mammals, RSF is involved in regulation of transcription from RNA polymerase II promoters). tmpzr1t_l9r_go_relaxed.owl remodeling and spacing factor complex cellular_component owl:Class GO:1903380 biolink:NamedThing positive regulation of mitotic chromosome condensation Any process that activates or increases the frequency, rate or extent of mitotic chromosome condensation. tmpzr1t_l9r_go_relaxed.owl up regulation of mitotic chromosome condensation|up-regulation of mitotic chromosome condensation|activation of mitotic chromosome condensation|upregulation of mitotic chromosome condensation al 2014-08-26T13:57:29Z biological_process owl:Class GO:0022824 biolink:NamedThing transmitter-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific neurotransmitter has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ionotropic neurotransmitter receptor activity molecular_function owl:Class GO:0034704 biolink:NamedThing calcium channel complex An ion channel complex through which calcium ions pass. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004145 biolink:NamedThing diamine N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an alkane-alpha,omega-diamine = CoA + an N-acetyldiamine. tmpzr1t_l9r_go_relaxed.owl spermine N-acetyltransferase|acetyl-coenzyme A-1,4-diaminobutane N-acetyltransferase activity|spermine N(1)-acetyltransferase|putrescine (diamine)-acetylating enzyme activity|putrescine acetyltransferase activity|putrescine acetylase activity|diamine acetyltransferase activity|putrescine N-acetyltransferase activity|spermidine N1-acetyltransferase activity|spermidine N(1)-acetyltransferase activity|spermidine acetyltransferase activity|spermidine/spermine N1-acetyltransferase activity|acetyl-CoA:alkane-alpha,omega-diamine N-acetyltransferase activity|spermine acetyltransferase Reactome:R-HSA-351208|RHEA:25181|MetaCyc:DIAMACTRANS-RXN|Reactome:R-HSA-351207|EC:2.3.1.57 molecular_function owl:Class GO:0102201 biolink:NamedThing (+)-2-epi-prezizaene synthase activity Catalysis of the reaction: 2-cis,6-trans-farnesyl diphosphate <=> (+)-2-epi-prezizaene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12117 molecular_function owl:Class GO:0009159 biolink:NamedThing deoxyribonucleoside monophosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside monophosphate catabolism|deoxyribonucleoside monophosphate degradation|deoxyribonucleoside monophosphate breakdown biological_process owl:Class GO:0030761 biolink:NamedThing 8-hydroxyquercitin 8-O-methyltransferase activity Catalysis of the reaction: 3,3',4',5,7,8-hexahydroxyflavone + S-adenosyl-L-methionine(1+) = 3,3',4',5,7-pentahydroxy-8-methoxyflavone + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl 8-hydroxyquercetin 8-O-methyltransferase activity|S-adenosyl-L-methionine:3,3',4',5,7,8-hexahydroxyflavone 8-O-methyltransferase activity|flavonol 8-O-methyltransferase activity|flavonol 8-methyltransferase activity MetaCyc:2.1.1.88-RXN|RHEA:16593|EC:2.1.1.88|KEGG_REACTION:R04398 molecular_function owl:Class GO:1901509 biolink:NamedThing regulation of endothelial tube morphogenesis Any process that modulates the frequency, rate or extent of endothelial tube morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2012-10-17T14:30:40Z biological_process owl:Class GO:0120132 biolink:NamedThing positive regulation of apoptotic process in bone marrow cell Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process in the bone marrow. tmpzr1t_l9r_go_relaxed.owl up-regulation of apoptosis in bone marrow|positive regulation of bone marrow cell apoptosis|upregulation of apoptosis in bone marrow|positive regulation of apoptosis in bone marrow|positive regulation of apoptotic process in bone marrow|up regulation of apoptosis in bone marrow|positive regulation of programmed cell death, bone marrow cells|positive regulation of programmed cell death of bone marrow cells by apoptosis|positive regulation of bone marrow cell programmed cell death by apoptosis|positive regulation of killing of bone marrow cells|activation of apoptosis in bone marrow krc 2018-02-19T16:51:46Z biological_process owl:Class GO:0097079 biolink:NamedThing selenite:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: selenite(out) + H+(out) = selenite(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl selenite:H+ symporter activity|selenite:hydrogen symporter activity pr 2011-06-17T10:01:11Z molecular_function owl:Class GO:0044559 biolink:NamedThing envenomation resulting in modulation of voltage-gated potassium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of a voltage-gated potassium channel in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-05T03:35:20Z biological_process owl:Class GO:0044819 biolink:NamedThing mitotic G1/S transition checkpoint signaling A cell cycle checkpoint that detects and negatively regulates progression from G1 to S phase as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic G1/S transition checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2013-11-19T14:31:14Z biological_process owl:Class GO:0002669 biolink:NamedThing positive regulation of T cell anergy Any process that activates or increases the frequency, rate, or extent of T cell anergy. tmpzr1t_l9r_go_relaxed.owl activation of T cell anergy|upregulation of T cell anergy|positive regulation of T-cell anergy|up regulation of T cell anergy|up-regulation of T cell anergy|positive regulation of T lymphocyte anergy|positive regulation of T-lymphocyte anergy|stimulation of T cell anergy biological_process owl:Class GO:0062108 biolink:NamedThing negative regulation of protein localization to non-growing cell tip Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to a non-growing cell tip. tmpzr1t_l9r_go_relaxed.owl dph 2019-02-05T13:03:52Z biological_process owl:Class GO:0140039 biolink:NamedThing cell-cell adhesion in response to extracellular stimulus The attachment of one cell to another cell via adhesion molecules as a result of an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl pg 2017-05-24T11:37:30Z biological_process owl:Class GO:0010425 biolink:NamedThing DNA methylation on cytosine within a CNG sequence The covalent transfer of a methyl group, to C-5 or N-4, of a cytosine located within a CNG sequence in a DNA molecule. N stands for any nucleotide. tmpzr1t_l9r_go_relaxed.owl cytosine methylation within a CNG sequence biological_process owl:Class GO:0019909 biolink:NamedThing [pyruvate dehydrogenase (lipoamide)] phosphatase regulator activity Binds to and modulates of the activity of [pyruvate dehydrogenase (lipoamide)] phosphatase. tmpzr1t_l9r_go_relaxed.owl [pyruvate dehydrogenase (lipoamide)] phosphatase, intrinsic regulator activity molecular_function owl:Class GO:0047278 biolink:NamedThing bilirubin-glucuronoside glucuronosyltransferase activity Catalysis of the reaction: 2 bilirubin-glucuronoside = bilirubin + bilirubin-bisglucuronoside. tmpzr1t_l9r_go_relaxed.owl bilirubin monoglucuronide transglucuronidase activity|bilirubin-glucuronoside:bilirubin-glucuronoside D-glucuronosyltransferase activity|bilirubin glucuronoside glucuronosyltransferase activity MetaCyc:2.4.1.95-RXN|KEGG_REACTION:R00062|RHEA:16885 molecular_function owl:Class GO:1900620 biolink:NamedThing acetate ester biosynthetic process The chemical reactions and pathways resulting in the formation of an acetate esteran acetate ester, any carboxylic ester where the carboxylic acid component is acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate ester synthesis|acetate ester formation|acetate ester biosynthesis|acetyl ester biosynthetic process|acetyl ester biosynthesis|acetate ester anabolism bf 2012-05-16T12:30:12Z biological_process owl:Class GO:0106281 biolink:NamedThing chenodeoxycholate 7-alpha-dehydrogenase (NAD+) activity Catalysis of the reaction: chenodeoxycholate + NAD(+) = 7-oxolithocholate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:42036 hjd 2020-07-29T17:48:25Z molecular_function owl:Class GO:0031495 biolink:NamedThing negative regulation of mating type switching Any process that stops, prevents, or reduces the frequency, rate or extent of mating type switching. tmpzr1t_l9r_go_relaxed.owl down-regulation of mating type switching|downregulation of mating type switching|inhibition of mating type switching|down regulation of mating type switching biological_process owl:Class GO:0050120 biolink:NamedThing N-acetylhexosamine 1-dehydrogenase activity Catalysis of the reaction: N-acetyl-D-glucosamine + H(2)O + NAD(+) = N-acetyl-D-glucosaminate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl N-acetylhexosamine dehydrogenase activity|N-acetyl-D-hexosamine dehydrogenase activity|N-acetyl-D-hexosamine:NAD+ 1-oxidoreductase activity RHEA:23144|EC:1.1.1.240|KEGG_REACTION:R01202|MetaCyc:N-ACETYLHEXOSAMINE-1-DEHYDROGENASE-RXN molecular_function owl:Class GO:0031133 biolink:NamedThing regulation of axon diameter Any process that modulates the rate, direction or extent of axon growth such that the correct diameter is attained and maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043215 biolink:NamedThing daunorubicin transport The directed movement of daunorubicin, an anthracycline antibiotic produced by Streptomyces coeruleorubidus or S. peucetius and used as an antineoplastic into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061335 biolink:NamedThing cell growth involved in Malpighian tubule morphogenesis The growth of an epithelial cell dependent on cycles of endoreplication, where growth contributes to the shaping of the Malpighian tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T02:08:25Z biological_process owl:Class GO:0030264 biolink:NamedThing nuclear fragmentation involved in apoptotic nuclear change The breakdown of the nucleus into small membrane-bounded compartments, or blebs, each of which contain compacted DNA. tmpzr1t_l9r_go_relaxed.owl nuclear fragmentation during apoptosis|apoptotic nuclear fragmentation|nucleus fragmentation biological_process owl:Class GO:0001703 biolink:NamedThing gastrulation with mouth forming first A gastrulation process in which the initial invagination becomes the mouth and the anus forms second. tmpzr1t_l9r_go_relaxed.owl protostomic gastrulation biological_process owl:Class GO:0030395 biolink:NamedThing lactose binding Binding to lactose, a disaccharide of glucose and galactose, the carbohydrate of milk. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048030 biolink:NamedThing disaccharide binding Binding to a disaccharide. Disaccharides are sugars composed of two monosaccharide units. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031922 biolink:NamedThing pyridoxamine transport The directed movement of pyridoxamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031919 biolink:NamedThing vitamin B6 transport The directed movement of any of the vitamin B6 compounds -- pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate -- into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052026 biolink:NamedThing modulation by symbiont of host transcription Any process in which an organism modulates the frequency, rate or extent of its host's transcription. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000634 biolink:NamedThing regulation of primary miRNA processing Any process that modulates the frequency, rate or extent of primary microRNA processing. tmpzr1t_l9r_go_relaxed.owl regulation of primary microRNA processing|regulation of pri-miRNA processing dph 2011-04-18T03:50:50Z biological_process owl:Class GO:0035755 biolink:NamedThing cardiolipin hydrolase activity Catalysis of the hydrolysis of cardiolipin (1,3-bis(3-phosphatidyl)glycerol), releasing phosphatidic acid (PA). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/8492|https://github.com/geneontology/go-ontology/issues/21230 Reactome:R-HSA-8954398 bf 2011-03-24T10:14:05Z molecular_function owl:Class GO:0047642 biolink:NamedThing aldose beta-D-fructosyltransferase activity Catalysis of the reaction: alpha-D-aldosyl1 beta-D-fructoside + D-aldose2 = D-aldose1 + alpha-D-aldosyl2 beta-D-fructoside. tmpzr1t_l9r_go_relaxed.owl alpha-D-aldosyl-beta-D-fructoside:aldose 1-beta-D-fructosyltransferase activity|aldose b-D-fructosyltransferase activity EC:2.4.1.162|MetaCyc:ALDOSE-BETA-FRUCTOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0050738 biolink:NamedThing fructosyltransferase activity Catalysis of the transfer of a fructosyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035224 biolink:NamedThing genital disc anterior/posterior pattern formation The establishment, maintenance and elaboration of the anterior/posterior axis of the genital disc. An anterior and posterior compartment form in each of the three genital disc primoridia (the female genital disc primordium, the male genital disc primordium and the anal primordium). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035221 biolink:NamedThing genital disc pattern formation The process that gives rise to the patterns of cell differentiation that will arise in the genital imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072203 biolink:NamedThing cell proliferation involved in metanephros development The multiplication or reproduction of cells, resulting in the expansion of the population in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T10:42:27Z biological_process owl:Class GO:0099156 biolink:NamedThing cell-cell signaling via exosome Cell-cell signaling in which the ligand is carried between cells by an exosome. tmpzr1t_l9r_go_relaxed.owl exosome mediated dos 2017-07-05T16:40:45Z biological_process owl:Class GO:1904254 biolink:NamedThing regulation of iron ion transmembrane transporter activity Any process that modulates the frequency, rate or extent of an iron transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of iron channel activity|regulation of iron cation channel activity|regulation of iron-specific channel activity kom 2015-05-20T14:05:00Z biological_process owl:Class GO:1903014 biolink:NamedThing cellular response to differentiation-inducing factor 1 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to DIF-1|cellular response to DIF1|DIF-1|cellular response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one rjd 2014-05-14T16:18:18Z biological_process owl:Class GO:0006061 biolink:NamedThing sorbitol biosynthetic process The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl sorbitol synthesis|sorbitol formation|sorbitol biosynthesis|sorbitol anabolism biological_process owl:Class GO:0030832 biolink:NamedThing regulation of actin filament length Any process that controls the length of actin filaments in a cell. tmpzr1t_l9r_go_relaxed.owl Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0005367 biolink:NamedThing myo-inositol:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: myo-inositol(out) + Na+(out) = myo-inositol(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl myo-inositol-sodium cotransporter activity Reactome:R-HSA-429663 molecular_function owl:Class GO:0090043 biolink:NamedThing regulation of tubulin deacetylation Any process that modulates the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T11:53:07Z biological_process owl:Class GO:0090311 biolink:NamedThing regulation of protein deacetylation Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl regulation of protein amino acid deacetylation tb 2010-04-14T01:30:45Z biological_process owl:Class GO:0097393 biolink:NamedThing telomeric repeat-containing RNA transcription The synthesis of telomeric repeat-containing RNA from a DNA template. A telomere is a complex of DNA and proteins that seals the end of a chromosome. tmpzr1t_l9r_go_relaxed.owl TERRA transcription pr 2012-10-23T10:06:17Z biological_process owl:Class GO:0003403 biolink:NamedThing optic vesicle formation The developmental process pertaining to the initial formation of the optic vesicle from the lateral wall of the forebrain. This process begins with the specific processes that contribute to the appearance of the vesicle and ends when the vesicle has evaginated. The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T01:42:37Z biological_process owl:Class GO:0090101 biolink:NamedThing negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway Any process that decreases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl negative regulation of transmembrane receptor protein serine/threonine kinase signalling pathway tb 2009-11-13T10:56:52Z biological_process owl:Class GO:0004151 biolink:NamedThing dihydroorotase activity Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+). tmpzr1t_l9r_go_relaxed.owl DHOase activity|carbamoylaspartic dehydrase activity|dihydroorotate hydrolase activity|(S)-dihydroorotate amidohydrolase activity EC:3.5.2.3|RHEA:24296|Reactome:R-HSA-73571|KEGG_REACTION:R01993|MetaCyc:DIHYDROOROT-RXN molecular_function owl:Class GO:0018916 biolink:NamedThing nitrobenzene metabolic process The chemical reactions and pathways involving nitrobenzene (nitrobenzol), a derivative of benzene with an NO2 group attached to the ring. It is a yellow aromatic liquid used in perfumery and manufactured in large quantities in the preparation of aniline. tmpzr1t_l9r_go_relaxed.owl nitrobenzene metabolism UM-BBD_pathwayID:nb biological_process owl:Class GO:0031785 biolink:NamedThing type 1A melatonin receptor binding Binding to a type 1A melatonin receptor. tmpzr1t_l9r_go_relaxed.owl type 1A melatonin receptor ligand molecular_function owl:Class GO:0002057 biolink:NamedThing guanine binding Binding to guanine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900702 biolink:NamedThing negative regulation of orcinol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of orcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of orcinol biosynthetic process|down regulation of orcinol biosynthesis|negative regulation of orcinol biosynthesis|downregulation of orcinol formation|down regulation of orcinol formation|negative regulation of orcinol formation|inhibition of orcinol biosynthesis|inhibition of orcinol biosynthetic process|downregulation of orcinol synthesis|down-regulation of orcinol biosynthetic process|negative regulation of orcinol synthesis|inhibition of orcinol synthesis|inhibition of orcinol anabolism|down-regulation of orcinol biosynthesis|negative regulation of orcinol anabolism|down regulation of orcinol anabolism|downregulation of orcinol biosynthesis|down regulation of orcinol synthesis|downregulation of orcinol biosynthetic process|down-regulation of orcinol formation|downregulation of orcinol anabolism|down-regulation of orcinol anabolism|inhibition of orcinol formation|down-regulation of orcinol synthesis di 2012-05-22T04:58:20Z biological_process owl:Class GO:0004499 biolink:NamedThing N,N-dimethylaniline monooxygenase activity Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl dimethylaniline oxidase activity|methylphenyltetrahydropyridine N-monooxygenase activity|FAD-containing monooxygenase activity|flavin monooxygenase activity|FMO-I|FMO3|FMO2|FMO4|flavin mixed function oxidase activity|1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine:oxygen N-oxidoreductase activity|FMO-II|DMA oxidase activity|FMO1|flavin-containing monooxygenase activity|FMO5|Ziegler's enzyme|N,N-dimethylaniline,NADPH:oxygen oxidoreductase (N-oxide-forming)|dimethylaniline N-oxidase activity|mixed-function amine oxidase activity|FMO activity|dimethylaniline monooxygenase (N-oxide-forming) activity RHEA:24468|MetaCyc:1.14.13.8-RXN|Reactome:R-HSA-217255|EC:1.14.13.8|Reactome:R-HSA-139970|Reactome:R-HSA-5602966 GO:0047076 molecular_function owl:Class GO:0010917 biolink:NamedThing negative regulation of mitochondrial membrane potential Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or extent of a mitochondrial membrane potential, the electric potential existing across any mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl reduction of mitochondrial membrane potential biological_process owl:Class GO:0050767 biolink:NamedThing regulation of neurogenesis Any process that modulates the frequency, rate or extent of neurogenesis, the generation of cells in the nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035164 biolink:NamedThing embryonic plasmatocyte differentiation The process in which an embryonic mesoderm-derived hemocyte precursor cell acquires the specialized features of the phagocytic blood-cell type, the plasmatocyte. tmpzr1t_l9r_go_relaxed.owl embryonic plasmatocyte cell differentiation biological_process owl:Class GO:0032175 biolink:NamedThing mating projection septin ring A septin ring, i.e. a ring-shaped structure composed of septins and septin-associated proteins, located at the neck of a shmoo (mating projection). The septin ring in the neck of a shmoo may act as a barrier to localize mating factors in the shmoo tip. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0039680 biolink:NamedThing actin-dependent intracellular transport of virus towards nucleus The directed movement of a virus, or part of a virus, towards the host cell nucleus using actin filaments. tmpzr1t_l9r_go_relaxed.owl actin-dependent intracellular transport of viral material towards nucleus|actin-dependent inwards viral transport VZ:991 bf 2013-10-10T11:24:56Z biological_process owl:Class GO:0075520 biolink:NamedThing actin-dependent intracellular transport of virus The directed movement of a virus, or part of a virus, within the host cell cytoplasm via the host's actin filaments. Actin-dependent transport is induced by viral proteins that interact with actin and/or host cell motor proteins like myosins or that promotes actin polymerization/depolymerization reactions. tmpzr1t_l9r_go_relaxed.owl actin-dependent intracellular transport of viral material VZ:991 jl 2011-08-03T01:45:55Z biological_process owl:Class GO:0015503 biolink:NamedThing glutathione-regulated potassium exporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in), where glutathione maintains the closed state. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033532 biolink:NamedThing stachyose biosynthetic process The chemical reactions and pathways resulting in the formation of stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl stachyose synthesis|stachyose anabolism|stachyose biosynthesis|stachyose formation MetaCyc:PWY-5337 biological_process owl:Class GO:0043813 biolink:NamedThing phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity Catalysis of the reaction: phosphatidylinositol-3,5-bisphosphate + H2O = phosphatidylinositol-3-phosphate + orthophosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3,5-bisphosphate 5-phosphatase activity Reactome:R-HSA-1676005|Reactome:R-HSA-1675836|Reactome:R-HSA-1676020|Reactome:R-HSA-1676174 molecular_function owl:Class GO:0106018 biolink:NamedThing phosphatidylinositol-3,5-bisphosphate phosphatase activity Catalysis of the reaction: 1-phosphatidyl-myo-inositol 3,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-10T14:19:13Z molecular_function owl:Class GO:0071929 biolink:NamedThing alpha-tubulin acetylation The addition of an acetyl group to the lysine 40 residue of alpha-tubulin. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-28T01:46:38Z biological_process owl:Class GO:0032195 biolink:NamedThing post-lysosomal vacuole A membrane-bounded intracellular vesicle formed late in the endocytic pathway when the pH in the vacuole becomes neutral prior to exocytosis. tmpzr1t_l9r_go_relaxed.owl postlysosome|post-lysosome https://github.com/geneontology/go-ontology/issues/22197 cellular_component owl:Class GO:0035410 biolink:NamedThing dihydrotestosterone 17-beta-dehydrogenase activity Catalysis of the reaction: 5alpha-dihydrotestosterone + NAD+ = 5alpha-androstane-3,17-dione + NADH. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.51 bf 2010-03-24T10:48:41Z molecular_function owl:Class GO:0060834 biolink:NamedThing oral/aboral axis specification The establishment, maintenance and elaboration of a line that delineates the mouth and the anus of an embryo. tmpzr1t_l9r_go_relaxed.owl oral/aboral axis determination dph 2009-08-11T03:25:26Z biological_process owl:Class GO:0000578 biolink:NamedThing embryonic axis specification The establishment, maintenance and elaboration of a pattern along a line or a point in an embryo. tmpzr1t_l9r_go_relaxed.owl embryonic axis determination biological_process owl:Class GO:0008603 biolink:NamedThing cAMP-dependent protein kinase regulator activity Modulation of the activity of the enzyme cAMP-dependent protein kinase. tmpzr1t_l9r_go_relaxed.owl 3',5'-cAMP-dependent protein kinase regulator activity|cAMP-dependent protein kinase, intrinsic regulator activity|cyclic AMP-dependent protein kinase regulator activity|3',5' cAMP-dependent protein kinase regulator activity|adenosine 3',5'-cyclophosphate-dependent protein kinase regulator activity molecular_function owl:Class GO:0050687 biolink:NamedThing negative regulation of defense response to virus Any process that stops, prevents or reduces the rate or extent of antiviral mechanisms, thereby facilitating viral replication. tmpzr1t_l9r_go_relaxed.owl down-regulation of antiviral response|downregulation of antiviral response|down regulation of antiviral response|inhibition of antiviral response|negative regulation of antiviral response biological_process owl:Class GO:0070486 biolink:NamedThing leukocyte aggregation The adhesion of one leukocyte to one or more other leukocytes via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl immune cell aggregation|white corpuscle aggregation|white blood cell aggregation|leucocyte aggregation biological_process owl:Class GO:0034127 biolink:NamedThing regulation of MyD88-independent toll-like receptor signaling pathway Any process that modulates the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation ofMyD88-independent toll-like receptor signalling pathway|regulation ofMyD88-independent TLR signaling pathway biological_process owl:Class GO:0004410 biolink:NamedThing homocitrate synthase activity Catalysis of the reaction: 2-oxoglutarate + acetyl-CoA + H(2)O = CoA + H(+) + homocitrate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxybutane-1,2,4-tricarboxylate 2-oxoglutarate-lyase (CoA-acetylating)|acetyl-CoA:2-oxoglutarate C-acetyltransferase (thioester-hydrolysing, carboxymethyl forming)|2-hydroxybutane-1,2,4-tricarboxylate 2-oxoglutarate-lyase (CoA- acetylating) activity|acetyl-coenzyme A:2-ketoglutarate C-acetyl transferase activity|homocitrate synthetase activity MetaCyc:HOMOCITRATE-SYNTHASE-RXN|EC:2.3.3.14|KEGG_REACTION:R00271|RHEA:12929 Note that this function was formerly EC:4.1.3.21. molecular_function owl:Class GO:1901696 biolink:NamedThing cannabinoid biosynthetic process The chemical reactions and pathways resulting in the formation of cannabinoid. tmpzr1t_l9r_go_relaxed.owl cannabinoid anabolism|cannabinoid formation|cannabinoid biosynthesis|cannabinoid synthesis ms 2012-12-13T08:07:47Z biological_process owl:Class GO:0097153 biolink:NamedThing cysteine-type endopeptidase activity involved in apoptotic process Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the apoptotic process. tmpzr1t_l9r_go_relaxed.owl caspase activity|metacaspase activity Reactome:R-HSA-6800797 pr 2011-09-09T10:21:56Z molecular_function owl:Class GO:0061794 biolink:NamedThing conidium development The process whose specific outcome is the progression of conidium over time, from its formation to the mature structure. Conidia are non-motile spores produced via mitotic asexual reproduction in higher fungi; they are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-17T09:53:51Z biological_process owl:Class GO:0002555 biolink:NamedThing histamine secretion by platelet The regulated release of histamine by a platelet or group of platelets. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071680 biolink:NamedThing response to indole-3-methanol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus. tmpzr1t_l9r_go_relaxed.owl response to indole-3-carbinol mah 2010-02-18T04:05:09Z biological_process owl:Class GO:0019897 biolink:NamedThing extrinsic component of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl peripheral plasma membrane protein|juxtamembrane|extrinsic to plasma membrane GO:0000157 cellular_component owl:Class GO:0035106 biolink:NamedThing operant conditioning Learning to anticipate future events on the basis of past experience with the consequences of one's own behavior. tmpzr1t_l9r_go_relaxed.owl instrumental conditioning Wikipedia:Operant_conditioning biological_process owl:Class GO:0010137 biolink:NamedThing ureide biosynthetic process The chemical reactions and pathways resulting in the formation of ureide, the organic form of nitrogen in nitrogen fixing and transporting plants, from IMP, which is synthesized de novo during nitrogen fixation by roots. tmpzr1t_l9r_go_relaxed.owl ureide formation|ureide biosynthesis|ureide anabolism|ureide synthesis MetaCyc:URSIN-PWY biological_process owl:Class GO:0004632 biolink:NamedThing phosphopantothenate--cysteine ligase activity Catalysis of the reaction: CTP + (R)-4'-phosphopantothenate + L-cysteine = CMP + diphosphate + (R)-4'-phosphopantothenoyl-L-cysteine. Cysteine can be replaced by some of its derivatives. tmpzr1t_l9r_go_relaxed.owl (R)-4'-phosphopantothenate:L-cysteine ligase activity|phosphopantothenoylcysteine synthetase activity|phosphopantothenate-cysteine ligase activity RHEA:19397|Reactome:R-HSA-196753|MetaCyc:P-PANTOCYSLIG-RXN|EC:6.3.2.5 molecular_function owl:Class GO:0046777 biolink:NamedThing protein autophosphorylation The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). tmpzr1t_l9r_go_relaxed.owl protein amino acid autophosphorylation Wikipedia:Autophosphorylation biological_process owl:Class GO:0150167 biolink:NamedThing positive regulation of histone H3-K4 acetylation Any process that activates or increases the frequency, rate or extent of histone H3-K4 acetylation. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:32:18Z biological_process owl:Class GO:0019301 biolink:NamedThing rhamnose catabolic process The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose. tmpzr1t_l9r_go_relaxed.owl rhamnose breakdown|rhamnose degradation|rhamnose catabolism MetaCyc:RHAMCAT-PWY biological_process owl:Class GO:0071314 biolink:NamedThing cellular response to cocaine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:53:20Z biological_process owl:Class GO:0018688 biolink:NamedThing DDT 2,3-dioxygenase activity Catalysis of the reaction: 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane + O2 + 2 H+ + 2 e- = cis-2,3-dihydrodiol DDT. 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane is also known as DDT. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0450 molecular_function owl:Class GO:0060499 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in lung induction The series of molecular signals generated as a consequence of a fibroblast growth factor-type receptor binding to one of its physiological ligands resulting in the formation of the lung bud along the lateral-esophageal sulcus. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in lung induction biological_process owl:Class GO:0022836 biolink:NamedThing gated channel activity Enables the transmembrane transfer of a solute by a channel that opens in response to a specific stimulus. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097137 biolink:NamedThing BAD-BCL-xl complex A heterodimeric protein complex consisting of BAD and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:36:06Z cellular_component owl:Class GO:0080132 biolink:NamedThing fatty acid alpha-hydroxylase activity Catalysis of the conversion of a fatty acid to an alpha-hydroxylated fatty acid. A hydroxyl group is added to the second carbon, counted from the carboxyl end, of a fatty acid chain. tmpzr1t_l9r_go_relaxed.owl fatty acid 2-hydroxylase Reactome:R-HSA-5693761 dhl 2009-05-06T04:43:36Z molecular_function owl:Class GO:0090308 biolink:NamedThing regulation of DNA methylation-dependent heterochromatin assembly Any process that modulates the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. tmpzr1t_l9r_go_relaxed.owl regulation of methylation-dependent chromatin silencing tb 2010-04-09T02:12:53Z biological_process owl:Class GO:1900983 biolink:NamedThing vindoline metabolic process The chemical reactions and pathways involving vindoline. tmpzr1t_l9r_go_relaxed.owl vindoline metabolism yaf 2012-06-14T09:16:29Z biological_process owl:Class GO:0045329 biolink:NamedThing carnitine biosynthetic process The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl vitamin Bt biosynthetic process|carnitine formation|carnitine biosynthesis|carnitine anabolism|carnitine synthesis|vitamin Bt biosynthesis biological_process owl:Class GO:0016129 biolink:NamedThing phytosteroid biosynthetic process The chemical reactions and pathways resulting in the formation of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. tmpzr1t_l9r_go_relaxed.owl phytosteroid synthesis|phytosteroid formation|phytosteroid anabolism|phytosteroid biosynthesis biological_process owl:Class GO:0015733 biolink:NamedThing shikimate transmembrane transport The process in which shikimate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl shikimate transport biological_process owl:Class GO:0052746 biolink:NamedThing inositol phosphorylation The process of introducing one or more phosphate groups into inositol. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl inositol and derivative phosphorylation|myo-inositol and derivative phosphorylation|myo-inositol phosphorylation ai 2011-09-14T01:55:23Z biological_process owl:Class GO:0061853 biolink:NamedThing regulation of neuroblast migration Any process that modulates the frequency, rate or extent of neuroblast migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-03-08T18:17:07Z biological_process owl:Class GO:0046150 biolink:NamedThing melanin catabolic process The chemical reactions and pathways resulting in the breakdown of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom. tmpzr1t_l9r_go_relaxed.owl melanin catabolism|melanin degradation|melanin breakdown biological_process owl:Class GO:0006582 biolink:NamedThing melanin metabolic process The chemical reactions and pathways involving melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom. tmpzr1t_l9r_go_relaxed.owl melanin metabolism biological_process owl:Class GO:0012508 biolink:NamedThing Golgi to ER transport vesicle membrane The lipid bilayer surrounding a vesicle transporting substances from the Golgi to the ER. tmpzr1t_l9r_go_relaxed.owl Golgi-ER transport vesicle membrane|Golgi-endoplasmic reticulum transport vesicle membrane|Golgi to endoplasmic reticulum transport vesicle membrane|Golgi to ER constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0051720 biolink:NamedThing DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpNpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpNpG. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002801 biolink:NamedThing negative regulation of antifungal peptide secretion Any process that stops, prevents, or reduces the frequency, rate, or extent of antifungal peptide secretion. tmpzr1t_l9r_go_relaxed.owl inhibition of antifungal peptide secretion|downregulation of antifungal peptide secretion|down-regulation of antifungal peptide secretion|down regulation of antifungal peptide secretion biological_process owl:Class GO:1903215 biolink:NamedThing negative regulation of protein targeting to mitochondrion Any process that stops, prevents or reduces the frequency, rate or extent of protein targeting to mitochondrion. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial translocation|negative regulation of protein-mitochondrial targeting|down-regulation of protein-mitochondrial targeting|down-regulation of mitochondrial translocation|inhibition of protein-mitochondrial targeting|downregulation of protein-mitochondrial targeting|inhibition of protein import into mitochondrion|down-regulation of protein targeting to mitochondria|down regulation of mitochondrial protein import|downregulation of mitochondrial translocation|down regulation of protein-mitochondrial targeting|down regulation of mitochondrial translocation|downregulation of protein targeting to mitochondria|down-regulation of protein import into mitochondrion|inhibition of mitochondrial translocation|inhibition of protein targeting to mitochondrion|inhibition of mitochondrial protein import|down regulation of protein targeting to mitochondrion|negative regulation of protein targeting to mitochondria|negative regulation of protein import into mitochondrion|downregulation of mitochondrial protein import|down regulation of protein import into mitochondrion|downregulation of protein targeting to mitochondrion|downregulation of protein import into mitochondrion|down-regulation of protein targeting to mitochondrion|down-regulation of mitochondrial protein import|inhibition of protein targeting to mitochondria|down regulation of protein targeting to mitochondria|negative regulation of mitochondrial protein import bf 2014-07-24T10:17:19Z biological_process owl:Class GO:0071288 biolink:NamedThing cellular response to mercury ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to mercury|cellular response to mercuric ion mah 2009-12-10T04:06:37Z biological_process owl:Class GO:0046689 biolink:NamedThing response to mercury ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to mercury|mercuric sensitivity/resistance|response to mercuric ion biological_process owl:Class GO:0050915 biolink:NamedThing sensory perception of sour taste The series of events required to receive a sour taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl sour taste perception biological_process owl:Class GO:0050909 biolink:NamedThing sensory perception of taste The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl sense of taste|gustation|taste|taste perception Wikipedia:Taste biological_process owl:Class GO:0047551 biolink:NamedThing 2-oxoaldehyde dehydrogenase (NAD+) activity Catalysis of the reaction: a 2-oxoaldehyde + NAD+ + H2O = a 2-oxo acid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl methylglyoxal dehydrogenase activity|alpha-ketoaldehyde dehydrogenase activity|2-oxoaldehyde dehydrogenase (NAD+)|2-oxoaldehyde:NAD+ 2-oxidoreductase activity|NAD-linked alpha-ketoaldehyde dehydrogenase activity|2-ketoaldehyde dehydrogenase|NAD-dependent alpha-ketoaldehyde dehydrogenase activity MetaCyc:2-OXOALDEHYDE-DEHYDROGENASE-NAD+-RXN|RHEA:22276|Wikipedia:2-oxoaldehyde_dehydrogenase_(NAD+)|EC:1.2.1.23 molecular_function owl:Class GO:0045176 biolink:NamedThing apical protein localization Any process in which a protein is transported to, or maintained in, apical regions of the cell. tmpzr1t_l9r_go_relaxed.owl apical protein localisation|establishment and maintenance of protein localization in apical part of cell|establishment and maintenance of apical protein localization biological_process owl:Class GO:0060222 biolink:NamedThing regulation of retinal cone cell fate commitment Any process that modulates the process in which a cell becomes committed to a retinal cone cell fate. Retinal cone cell fate commitment is the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018492 biolink:NamedThing carbon-monoxide dehydrogenase (acceptor) activity Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl anaerobic carbon monoxide dehydrogenase activity|carbon-monoxide:acceptor oxidoreductase activity|carbon monoxide dehydrogenase activity MetaCyc:CARBON-MONOXIDE-DEHYDROGENASE-RXN|EC:1.2.7.4|RHEA:21040|UM-BBD_enzymeID:e0415 molecular_function owl:Class GO:0018538 biolink:NamedThing epoxide carboxylase activity Catalysis of the generic reaction: epoxide + CO2 + NAD+ + electron donor = beta-keto acid + NADH + reduced electron donor; the electron donor may be NADPH or a dithiol. This reaction is the ring opening and carboxylation of an epoxide; for example: epoxypropane + CO2 + NAD+ + NADPH = acetoacetate + NADH + NADP+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004651 biolink:NamedThing polynucleotide 5'-phosphatase activity Catalysis of the reaction: 5'-phosphopolynucleotide + H2O = polynucleotide + phosphate. tmpzr1t_l9r_go_relaxed.owl polynucleotide 5'-triphosphatase activity|5'-polynucleotidase activity|polynucleotide 5'-phosphohydrolase activity Reactome:R-HSA-77078|RHEA:11008|EC:3.1.3.33|MetaCyc:POLYNUCLEOTIDE-5-PHOSPHATASE-RXN molecular_function owl:Class GO:0098699 biolink:NamedThing structural constituent of presynaptic actin cytoskeleton The action of a molecule that contributes to the structural integrity of a presynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-06-09T18:33:07Z molecular_function owl:Class GO:0032457 biolink:NamedThing fast endocytic recycling The directed movement of membrane-bounded vesicles from peripheral endocytic compartments back to the plasma membrane where they are recycled for further rounds of transport. tmpzr1t_l9r_go_relaxed.owl direct endocytic recycling biological_process owl:Class GO:0043082 biolink:NamedThing megagametophyte egg cell nucleus The nucleus of a plant egg cell. This nucleus is found at the micropylar end of the embryo. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042372 biolink:NamedThing phylloquinone biosynthetic process The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants. tmpzr1t_l9r_go_relaxed.owl vitamin K1 biosynthetic process|phytylmenaquinone biosynthesis|phytonadione biosynthesis|phylloquinone synthesis|phytomenadione biosynthetic process|phylloquinone biosynthesis|vitamin K1 biosynthesis|phylloquinone anabolism|phylloquinone formation|phytomenadione biosynthesis|phytylmenaquinone biosynthetic process|phytonadione biosynthetic process MetaCyc:PWY-5027 biological_process owl:Class GO:0030449 biolink:NamedThing regulation of complement activation Any process that modulates the frequency, rate or extent of complement activation. tmpzr1t_l9r_go_relaxed.owl regulation of complement cascade biological_process owl:Class GO:0010774 biolink:NamedThing meiotic strand invasion involved in reciprocal meiotic recombination The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030911 biolink:NamedThing TPR domain binding Binding to a tetratricopeptide repeat (TPR) domain of a protein, the consensus sequence of which is defined by a pattern of small and large hydrophobic amino acids and a structure composed of helices. tmpzr1t_l9r_go_relaxed.owl tetratricopeptide repeat domain binding molecular_function owl:Class GO:1990238 biolink:NamedThing double-stranded DNA endodeoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within a double-stranded deoxyribonucleic acid molecule by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl dsDNA-specific endodeoxyribonuclease activity pg 2013-11-15T00:59:42Z molecular_function owl:Class GO:0043575 biolink:NamedThing detection of osmotic stimulus The series of events in which a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009442 biolink:NamedThing allantoin assimilation pathway The pathways by which allantoin is processed and converted to ureidoglycolate, and then into metabolically useful substrates. E. coli are able to utilize allantoin as a sole nitrogen source under anaerobic conditions by converting it to ureidoglycolate; this may be further metabolized to produce glyoxylate and thence 3-phosphoglycerate, or alternatively oxidized to oxolureate, which can converted into oxamate and carbamoylphosphate. This may then be further metabolized to CO2, NH4+ and ATP. tmpzr1t_l9r_go_relaxed.owl allantoin degradation pathway|allantoin catabolism via ureidoglycolate|allantoin catabolic process via ureidoglycolate MetaCyc:PWY0-41 biological_process owl:Class GO:0006012 biolink:NamedThing galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. tmpzr1t_l9r_go_relaxed.owl galactose metabolism Wikipedia:Galactose biological_process owl:Class GO:0008794 biolink:NamedThing arsenate reductase (glutaredoxin) activity Catalysis of the reaction: arsenate + reduced glutaredoxin = arsenite + oxidized glutaredoxin. Glutaredoxin functions as the electron donor for arsenate reduction. The electron flow therefore is ( NADPH -> glutathione reductase (EC:1.6.4.2) -> ) glutathione -> glutaredoxin -> arsenate reductase, i.e. glutathione is reduced by glutathione reductase and glutaredoxin is reduced by glutathione. tmpzr1t_l9r_go_relaxed.owl glutharedoxin:arsenate oxidoreductase activity EC:1.20.4.1|UM-BBD_reactionID:r0635|MetaCyc:RXN-982|RHEA:22016 molecular_function owl:Class GO:0042705 biolink:NamedThing ocellus photoreceptor cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a photoreceptor cell found in the ocellus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019600 biolink:NamedThing toluene oxidation The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in toluene. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051497 biolink:NamedThing negative regulation of stress fiber assembly Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts. tmpzr1t_l9r_go_relaxed.owl downregulation of stress fiber formation|negative regulation of stress fibre formation|down-regulation of stress fiber formation|negative regulation of stress fibre biosynthesis|down regulation of stress fiber formation|inhibition of stress fiber formation biological_process owl:Class GO:0045972 biolink:NamedThing negative regulation of juvenile hormone secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl down regulation of juvenile hormone secretion|inhibition of juvenile hormone secretion|downregulation of juvenile hormone secretion|down-regulation of juvenile hormone secretion biological_process owl:Class GO:0007558 biolink:NamedThing regulation of juvenile hormone secretion Any process that modulates the frequency, rate or extent of juvenile hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000434 biolink:NamedThing regulation of protein neddylation Any process that modulates the frequency, rate or extent of protein neddylation. tmpzr1t_l9r_go_relaxed.owl regulation of RUB1-protein conjugation vw 2011-03-03T02:05:22Z biological_process owl:Class GO:0008409 biolink:NamedThing 5'-3' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5358599|Reactome:R-HSA-5358619 molecular_function owl:Class GO:0060432 biolink:NamedThing lung pattern specification process Any developmental process that results in the creation of defined areas or spaces within the lung, to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075306 biolink:NamedThing regulation of conidium formation Any process that modulates the frequency, rate or extent of conidium formation, a process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034305 biolink:NamedThing regulation of asexual sporulation Any process that modulates the frequency, rate or extent of spore formation from the products of mitosis. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic spore formation|regulation of mitotic sporulation|regulation of asexual spore formation biological_process owl:Class GO:0090353 biolink:NamedThing polygalacturonase inhibitor activity Binds to and stops, prevents or reduces the activity of polygalacturonase. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-15T04:19:49Z molecular_function owl:Class GO:0018537 biolink:NamedThing coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity Catalysis of the reaction: 5-methyltetrahydromethanopterin + coenzyme F420 + H(+) = 5,10-methylenetetrahydromethanopterin + reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl methylene-H4MPT reductase activity|N(5),N(10)-methylenetetrahydromethanopterin reductase activity|N(5),N(10)-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity|N5,N10-methylenetetrahydromethanopterin reductase activity|methylenetetrahydromethanopterin reductase activity|5,10-methylenetetrahydromethanopterin cyclohydrolase activity|coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase activity|N5,N10-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity|methylene-H(4)MPT reductase activity|5-methyltetrahydromethanopterin:coenzyme-F420 oxidoreductase activity|5,10-methylenetetrahydromethanopterin reductase activity UM-BBD_reactionID:r0354|EC:1.5.98.2|RHEA:21144|MetaCyc:METHELENE-THMPT-OXI-RXN|KEGG_REACTION:R04464 molecular_function owl:Class GO:0002647 biolink:NamedThing negative regulation of central tolerance induction Any process that stops, prevents, or reduces the frequency, rate, or extent of central tolerance induction. tmpzr1t_l9r_go_relaxed.owl inhibition of central tolerance induction|downregulation of central tolerance induction|down regulation of central tolerance induction|down-regulation of central tolerance induction biological_process owl:Class GO:0050047 biolink:NamedThing leucine 2,3-aminomutase activity Catalysis of the reaction: L-leucine = (3R)-beta-leucine. tmpzr1t_l9r_go_relaxed.owl (2S)-alpha-leucine 2,3-aminomutase activity EC:5.4.3.7|KEGG_REACTION:R01091|MetaCyc:LEUCINE-23-AMINOMUTASE-RXN|RHEA:10284 molecular_function owl:Class GO:0002239 biolink:NamedThing response to oomycetes Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an oomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102870 biolink:NamedThing 7-hydroxyflavone-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 7-hydroxyflavone <=> 7-O-beta-D-glucosyl-7-hydroxyflavone + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8355 molecular_function owl:Class GO:1990853 biolink:NamedThing histone H2A SQE motif phosphorylation The modification of histone H2A by the addition of an phosphate group to the serine residue in the SQE motif of the histone. tmpzr1t_l9r_go_relaxed.owl al 2015-09-15T15:18:02Z biological_process owl:Class GO:0032550 biolink:NamedThing purine ribonucleoside binding Binding to a purine ribonucleoside, a compound consisting of a purine base linked to ribose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097722 biolink:NamedThing sperm motility Any process involved in the controlled movement of a sperm cell. tmpzr1t_l9r_go_relaxed.owl sperm movement pr 2016-09-01T12:00:45Z biological_process owl:Class GO:0042597 biolink:NamedThing periplasmic space The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria). tmpzr1t_l9r_go_relaxed.owl periplasm GO:0005620 cellular_component owl:Class GO:2000800 biolink:NamedThing regulation of endocardial cushion to mesenchymal transition involved in heart valve formation Any process that modulates the frequency, rate or extent of endocardial cushion to mesenchymal transition involved in heart valve formation. tmpzr1t_l9r_go_relaxed.owl regulation of endocardial cushion to mesenchymal transition involved in valve formation bf 2011-07-01T12:31:18Z biological_process owl:Class GO:0046050 biolink:NamedThing UMP catabolic process The chemical reactions and pathways resulting in the breakdown of UMP, uridine monophosphate. tmpzr1t_l9r_go_relaxed.owl UMP breakdown|UMP degradation|UMP catabolism biological_process owl:Class GO:0009222 biolink:NamedThing pyrimidine ribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleotide degradation|pyrimidine ribonucleotide breakdown|pyrimidine ribonucleotide catabolism biological_process owl:Class GO:0005925 biolink:NamedThing focal adhesion A cell-substrate junction that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. In insects focal adhesion has also been referred to as hemi-adherens junction (HAJ). tmpzr1t_l9r_go_relaxed.owl focal contact|hemi-adherens junction|adhesion plaque|connecting hemi-adherens junction|HAJ Wikipedia:Focal_adhesion GO:0005926|GO:0008357 cellular_component owl:Class GO:0102050 biolink:NamedThing indole-3-acetyl-tyrosine synthetase activity Catalysis of the reaction: indole-3-acetate + L-tyrosine + ATP(4-) <=> H+ + indole-3-acetyl-tyrosine + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10432 molecular_function owl:Class GO:0001905 biolink:NamedThing activation of membrane attack complex The activation of the membrane attack complex components of the complement cascade which can result in death of a target cell through cytolysis. tmpzr1t_l9r_go_relaxed.owl MAC formation|membrane attack complex assembly|membrane attack complex formation|activation of terminal complement complex|MAC assembly|activation of the terminal complement cascade|activation of MAC|activation of TCC biological_process owl:Class GO:0007635 biolink:NamedThing chemosensory behavior Behavior that is dependent upon the sensation of chemicals. tmpzr1t_l9r_go_relaxed.owl behavioural response to chemical stimulus|chemosensory behaviour|behavioral response to chemical stimulus biological_process owl:Class GO:0001958 biolink:NamedThing endochondral ossification Replacement ossification wherein bone tissue replaces cartilage. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Endochondral_ossification biological_process owl:Class GO:1901190 biolink:NamedThing regulation of formation of translation initiation ternary complex Any process that modulates the frequency, rate or extent of formation of translation initiation ternary complex. tmpzr1t_l9r_go_relaxed.owl regulation of translation initiation ternary complex assembly ss 2012-07-25T02:26:58Z biological_process owl:Class GO:1904618 biolink:NamedThing positive regulation of actin binding Any process that activates or increases the frequency, rate or extent of actin binding. tmpzr1t_l9r_go_relaxed.owl up regulation of membrane associated actin binding|up-regulation of actin binding|activation of actin binding|activation of membrane associated actin binding|up regulation of actin binding|upregulation of membrane associated actin binding|up-regulation of membrane associated actin binding|upregulation of actin binding|positive regulation of membrane associated actin binding mr 2015-08-27T19:09:08Z biological_process owl:Class GO:0030212 biolink:NamedThing hyaluronan metabolic process The chemical reactions and pathways involving hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl hyaluronan metabolism biological_process owl:Class GO:0002604 biolink:NamedThing regulation of dendritic cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002113 biolink:NamedThing interleukin-33 binding Binding to interleukin-33. tmpzr1t_l9r_go_relaxed.owl IL-33 binding molecular_function owl:Class GO:0045544 biolink:NamedThing gibberellin 20-oxidase activity Catalysis of the oxidation of C-20 gibberellins to form the corresponding C-19 lactones. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901954 biolink:NamedThing regulation of retrograde dense core granule transport Any process that modulates the frequency, rate or extent of retrograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl pr 2013-02-19T13:36:43Z biological_process owl:Class GO:0060328 biolink:NamedThing cytoplasmic actin-based contraction involved in forward cell motility The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the front of the cell. tmpzr1t_l9r_go_relaxed.owl cytoplasmic actin-based contraction involved in forward cell locomotion biological_process owl:Class GO:0060327 biolink:NamedThing cytoplasmic actin-based contraction involved in cell motility The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell from one place to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097662 biolink:NamedThing SCF-Das1 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Das1 in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:26:27Z cellular_component owl:Class GO:0018290 biolink:NamedThing iron and molybdenum incorporation into iron-molybdenum-sulfur cluster via L-cysteinyl homocitryl molybdenum-heptairon-nonasulfide The incorporation of iron and molybdenum into a Mo-7Fe-8S iron-molybdenum-sulfur cluster via L-cysteinyl homocitryl molybdenum-heptairon-nonasulfide, found in nitrogenase. tmpzr1t_l9r_go_relaxed.owl iron and molybdenum incorporation into iron-molybdenum-sulphur cluster via L-cysteinyl homocitryl molybdenum-heptairon-nonasulphide RESID:AA0141 biological_process owl:Class GO:0031038 biolink:NamedThing myosin II filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl myosin II filament assembly or disassembly|myosin II polymerization or depolymerization|myosin II filament organisation biological_process owl:Class GO:0045620 biolink:NamedThing negative regulation of lymphocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of lymphocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of lymphocyte differentiation|down regulation of lymphocyte differentiation|negative regulation of lymphocyte development|down-regulation of lymphocyte differentiation|downregulation of lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0102751 biolink:NamedThing UDP-alpha-D-glucose:glucosyl-glycogenin alpha-D-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + a glucosyl-glycogenin = (1,4-alpha-D-glucosyl)n-glucosyl glucogenin + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7667|EC:2.4.1.186|RHEA:56560 molecular_function owl:Class GO:0001573 biolink:NamedThing ganglioside metabolic process The chemical reactions and pathways involving ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues. tmpzr1t_l9r_go_relaxed.owl ganglioside metabolism biological_process owl:Class GO:0022601 biolink:NamedThing menstrual cycle phase The progression of physiological phases, occurring in the endometrium during the menstrual cycle that recur at regular intervals during the reproductive years. The menstrual cycle is an ovulation cycle where the endometrium is shed if pregnancy does not occur. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1903787 biolink:NamedThing negative regulation of glutathione biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of glutathione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of glutathione anabolism|downregulation of glutathione synthesis|negative regulation of glutathione anabolism|inhibition of glutathione biosynthetic process|downregulation of glutathione biosynthesis|down-regulation of glutathione anabolism|negative regulation of glutathione formation|inhibition of glutathione synthesis|down regulation of glutathione formation|inhibition of glutathione biosynthesis|down-regulation of glutathione biosynthesis|down regulation of glutathione anabolism|down-regulation of glutathione synthesis|down-regulation of glutathione biosynthetic process|downregulation of glutathione biosynthetic process|down regulation of glutathione synthesis|negative regulation of glutathione biosynthesis|downregulation of glutathione formation|down regulation of glutathione biosynthetic process|inhibition of glutathione anabolism|down regulation of glutathione biosynthesis|inhibition of glutathione formation|down-regulation of glutathione formation|negative regulation of glutathione synthesis bf 2015-01-08T17:14:59Z biological_process owl:Class GO:0080183 biolink:NamedThing response to photooxidative stress Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a photooxidative stress, the light-dependent generation of active oxygen species. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. tmpzr1t_l9r_go_relaxed.owl dhl 2011-08-10T04:26:11Z biological_process owl:Class GO:0035551 biolink:NamedThing protein initiator methionine removal involved in protein maturation Removal of the initiating methionine or formylmethionine residue from a protein that contributes to protein maturation, the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-13T04:29:05Z biological_process owl:Class GO:0070084 biolink:NamedThing protein initiator methionine removal The protein modification process in which the translation-initiating methionine or formylmethionine residue is removed from a protein. tmpzr1t_l9r_go_relaxed.owl removal of initiator methionine from protein biological_process owl:Class GO:0033951 biolink:NamedThing oligosaccharide reducing-end xylanase activity Catalysis of the hydrolysis of 1,4-beta-D-xylose residues from the reducing end of oligosaccharides. tmpzr1t_l9r_go_relaxed.owl reducing end xylose-releasing exo-oligoxylanase activity|Rex|beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranose reducing-end xylanase activity EC:3.2.1.156|MetaCyc:3.2.1.156-RXN molecular_function owl:Class GO:0003950 biolink:NamedThing NAD+ ADP-ribosyltransferase activity Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. tmpzr1t_l9r_go_relaxed.owl ADP-ribosyltransferase (polymerizing) activity|poly(ADP-ribose) synthase activity|poly(ADP-ribose)polymerase activity|NAD ADP-ribosyltransferase activity|NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|poly(ADP-ribose) synthetase activity|poly(adenosine diphosphate ribose) polymerase activity MetaCyc:NAD+-ADP-RIBOSYLTRANSFERASE-RXN|Reactome:R-HSA-8938073|Reactome:R-HSA-8948800|Reactome:R-HSA-5651723|Reactome:R-HSA-2187325|Reactome:R-HSA-9694773|Reactome:R-HSA-5688276|Reactome:R-HSA-9686061|Reactome:R-HSA-5687653|EC:2.4.2.30|Reactome:R-HSA-3640858 molecular_function owl:Class GO:1904217 biolink:NamedThing regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity Any process that modulates the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of phosphatidylserine synthetase activity|regulation of serine exchange enzyme|regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity|regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity|regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity|regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity|regulation of CDP-diglyceride:serine phosphatidyltransferase activity|regulation of phosphatidylserine synthase activity|regulation of PS synthase activity|regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity|regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity|regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity|regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity|regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of availability of the substrate rl 2015-05-15T08:18:23Z biological_process owl:Class GO:0030634 biolink:NamedThing carbon fixation by acetyl-CoA pathway A pathway of carbon dioxide fixation in which one molecule of acetyl-CoA is completely synthesized from two molecules of carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl Ljungdahl-Wood pathway|reductive acetyl CoA pathway|acetyl CoA pathway Wikipedia:Wood-Ljungdahl_pathway|MetaCyc:CODH-PWY biological_process owl:Class GO:0006085 biolink:NamedThing acetyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA synthesis|acetyl-CoA biosynthesis|acetyl-CoA formation|acetyl-CoA anabolism MetaCyc:PWY-5173 biological_process owl:Class GO:0010714 biolink:NamedThing positive regulation of collagen metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. tmpzr1t_l9r_go_relaxed.owl positive regulation of collagen metabolism biological_process owl:Class GO:0102383 biolink:NamedThing steviol 19-O glucosyltransferase activity Catalysis of the reaction: steviol + UDP-alpha-D-glucose <=> 19-O-beta-glucopyranosyl-steviol + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13520 molecular_function owl:Class GO:0070919 biolink:NamedThing production of siRNA involved in gene silencing by small RNA Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of gene silencing by small RNA. tmpzr1t_l9r_go_relaxed.owl chromatin silencing by small RNA, production of siRNA|production of guide RNAs involved in chromatin silencing by small RNA|production of siRNA involved in chromatin silencing by small RNA|chromatin silencing by small RNA, production of guide RNAs https://github.com/geneontology/go-ontology/issues/22058 mah 2009-09-11T03:39:18Z biological_process owl:Class GO:0009937 biolink:NamedThing regulation of gibberellic acid mediated signaling pathway Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling. tmpzr1t_l9r_go_relaxed.owl regulation of gibberellic acid mediated signalling biological_process owl:Class GO:0102856 biolink:NamedThing 1-18:2-2-18:2-sn-glycerol-3-phosphocholine desaturase activity Catalysis of the reaction: 1-18:2-2-18:2-sn-glycerol-3-phosphocholine + O2 + a reduced electron acceptor <=> 1-18:3-2-18:2-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.25|MetaCyc:RXN-8323 molecular_function owl:Class GO:0046118 biolink:NamedThing 7-methylguanosine biosynthetic process The chemical reactions and pathways resulting in the formation of 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA. tmpzr1t_l9r_go_relaxed.owl 7-methylguanosine formation|7-methylguanosine biosynthesis|7-methylguanosine synthesis|7-methylguanosine anabolism biological_process owl:Class GO:0050098 biolink:NamedThing methylguanidinase activity Catalysis of the reaction: H(2)O + methylguanidine = methylammonium + urea. tmpzr1t_l9r_go_relaxed.owl methylguanidine hydrolase activity|methylguanidine amidinohydrolase activity KEGG_REACTION:R01589|RHEA:11764|MetaCyc:METHYLGUANIDINASE-RXN|EC:3.5.3.16 molecular_function owl:Class GO:0044528 biolink:NamedThing regulation of mitochondrial mRNA stability Any process that modulates the propensity of mitochondrial mRNA molecules to degradation. Includes processes that both stabilize and destabilize mitochondrial mRNAs. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T03:20:10Z biological_process owl:Class GO:0072135 biolink:NamedThing kidney mesenchymal cell proliferation The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population in the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:33:10Z biological_process owl:Class GO:0047943 biolink:NamedThing glutamate-methylamine ligase activity Catalysis of the reaction: L-glutamate + ATP + methylammonium = N(5)-methyl-L-glutamine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl gamma-glutamylmethylamide synthetase activity|L-glutamate:methylamine ligase (ADP-forming) EC:6.3.4.12|MetaCyc:GLUTAMATE--METHYLAMINE-LIGASE-RXN|RHEA:17117|KEGG_REACTION:R01585 molecular_function owl:Class GO:0102617 biolink:NamedThing oryzalexin C synthase (oryzalexin B dependent) activity Catalysis of the reaction: oryzalexin B + NAD(P) <=> oryzalexin C + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15465 molecular_function owl:Class GO:0060686 biolink:NamedThing negative regulation of prostatic bud formation Any process that decreases the rate, frequency, or extent of prostatic bud formation, the morphogenetic process in which a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-05T12:35:25Z biological_process owl:Class GO:0048109 biolink:NamedThing peptide cross-linking via 2-amino-3-isothiazolidinone-L-serine The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl serine cross-link through a process of forming first an intermediate cysteine sulfenic acid by peroxide oxidation, followed by condensation with the alpha-amido of the following serine residue and the release of water. tmpzr1t_l9r_go_relaxed.owl RESID:AA0344 biological_process owl:Class GO:0098674 biolink:NamedThing extrinsic component of neuronal dense core vesicle membrane The component of the neuronal dense core vesicle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl dos 2017-01-17T16:20:56Z cellular_component owl:Class GO:0010589 biolink:NamedThing leaf proximal/distal pattern formation The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006046 biolink:NamedThing N-acetylglucosamine catabolic process The chemical reactions and pathways resulting in the breakdown of N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine breakdown|N-acetylglucosamine degradation|N-acetylglucosamine catabolism biological_process owl:Class GO:0006844 biolink:NamedThing acyl carnitine transport The directed movement of acyl carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060951 biolink:NamedThing neural crest-derived cardiac glial cell differentiation The process in which a neural crest cell acquires the specialized features of a glial cell of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T03:08:06Z biological_process owl:Class GO:0102049 biolink:NamedThing indole-3-acetyl-methionine synthetase activity Catalysis of the reaction: indole-3-acetate + L-methionine + ATP(4-) <=> H+ + indole-3-acetyl-methionine + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10431 molecular_function owl:Class GO:0097284 biolink:NamedThing hepatocyte apoptotic process Any apoptotic process in a hepatocyte, the main structural component of the liver. tmpzr1t_l9r_go_relaxed.owl hepatocyte apoptosis pr 2012-03-29T10:23:21Z biological_process owl:Class GO:0008039 biolink:NamedThing synaptic target recognition The process in which a neuronal cell in a multicellular organism interprets signals produced by potential target cells, with which it may form synapses. tmpzr1t_l9r_go_relaxed.owl neuronal targeting biological_process owl:Class GO:0034231 biolink:NamedThing islet amyloid polypeptide processing The formation of mature islet amyloid polypeptide (IAPP) by posttranslational processing of pro-islet amyloid polypeptide (pro-IAPP). tmpzr1t_l9r_go_relaxed.owl islet amyloid peptide processing|IAPP formation|IAPP processing|islet amyloid polypeptide formation|islet amyloid peptide formation biological_process owl:Class GO:0071913 biolink:NamedThing citrate secondary active transmembrane transporter activity Enables the transfer of citrate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl citrate carrier activity mah 2010-09-22T02:18:54Z molecular_function owl:Class GO:1903539 biolink:NamedThing protein localization to postsynaptic membrane A process in which a protein is transported to, or maintained in, a location within a postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation in postsynaptic membrane|protein localization in postsynaptic membrane|protein localisation to postsynaptic membrane kmv 2014-10-10T11:23:53Z biological_process owl:Class GO:0048903 biolink:NamedThing anterior lateral line neuromast hair cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an anterior lateral line neuromast hair cell. Neuromast hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002814 biolink:NamedThing negative regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl downregulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|inhibition of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|down regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria|down-regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria biological_process owl:Class GO:0002813 biolink:NamedThing regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010932 biolink:NamedThing regulation of macrophage tolerance induction Any process that modulates the frequency, rate, or extent of macrophage tolerance induction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031998 biolink:NamedThing regulation of fatty acid beta-oxidation Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042913 biolink:NamedThing group A colicin transmembrane transporter activity Enables the transfer of group A colicins (colicins E1, E2, E3, A, K, and N) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042912 biolink:NamedThing colicin transmembrane transporter activity Enables the transfer of a colicin from one side of a membrane to the other. Colicins are a group of antibiotics produced by E. coli and related species that are encoded by a group of naturally occurring plasmids, e.g. Col E1. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097745 biolink:NamedThing mitochondrial tRNA 5'-end processing The process in which the 5' end of a pre-tRNA molecule is converted to that of a mature tRNA in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl pr 2016-11-08T10:50:51Z biological_process owl:Class GO:1905671 biolink:NamedThing regulation of lysosome organization Any process that modulates the frequency, rate or extent of lysosome organization. tmpzr1t_l9r_go_relaxed.owl regulation of lysosome organisation|regulation of lysosome organization and biogenesis sl 2016-11-11T22:01:04Z biological_process owl:Class GO:0048387 biolink:NamedThing negative regulation of retinoic acid receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of retinoic acid receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of retinoic acid receptor signaling pathway|inhibition of retinoic acid receptor signaling pathway|negative regulation of RAR signalling pathway|negative regulation of retinoic acid receptor signalling pathway|down regulation of retinoic acid receptor signaling pathway|downregulation of retinoic acid receptor signaling pathway|negative regulation of RAR signaling pathway biological_process owl:Class GO:1903776 biolink:NamedThing regulation of double-strand break repair via single-strand annealing, removal of nonhomologous ends Any process that modulates the frequency, rate or extent of double-strand break repair via single-strand annealing, removal of nonhomologous ends. tmpzr1t_l9r_go_relaxed.owl al 2015-01-06T17:08:24Z biological_process owl:Class GO:0070426 biolink:NamedThing positive regulation of nucleotide-binding oligomerization domain containing signaling pathway Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing (NOD) pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of nucleotide-binding oligomerization domain containing signalling pathway|positive regulation of NOD signaling pathway biological_process owl:Class GO:0090566 biolink:NamedThing protein-phosphocysteine-N,N'-diacetylchitobiose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + N,N'-diacetylchitobiose(out) = protein cysteine + N,N'-diacetylchitobiose phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-04-08T15:08:43Z molecular_function owl:Class GO:0034374 biolink:NamedThing low-density lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL. tmpzr1t_l9r_go_relaxed.owl small dense low-density lipoprotein particle formation|LDL remodeling|small dense LDL formation biological_process owl:Class GO:0010120 biolink:NamedThing camalexin biosynthetic process The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin. tmpzr1t_l9r_go_relaxed.owl camalexin anabolism|camalexin synthesis|camalexin formation|camalexin biosynthesis MetaCyc:CAMALEXIN-SYN biological_process owl:Class GO:0009700 biolink:NamedThing indole phytoalexin biosynthetic process The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl indole phytoalexin synthesis|indole phytoalexin biosynthesis|indole phytoalexin anabolism|indole phytoalexin formation biological_process owl:Class GO:0009447 biolink:NamedThing putrescine catabolic process The chemical reactions and pathways resulting in the breakdown of putrescine, 1,4-diaminobutane; putrescine is the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl putrescine degradation|putrescine breakdown|putrescine catabolism biological_process owl:Class GO:0009445 biolink:NamedThing putrescine metabolic process The chemical reactions and pathways involving putrescine, 1,4-diaminobutane; putrescine can be formed by decarboxylation of ornithine and is the metabolic precursor of spermidine and spermine. tmpzr1t_l9r_go_relaxed.owl putrescine metabolism biological_process owl:Class GO:0018598 biolink:NamedThing hydroxymethylsilanetriol oxidase activity Catalysis of the reaction: hydroxymethylsilanetriol + O2 + 2 H+ + 2 e- = 2 H2O + formylsilanetriol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0641 molecular_function owl:Class GO:0070993 biolink:NamedThing translation preinitiation complex A ribonucleoprotein complex that contains the small ribosomal subunit, a translation initiation ternary complex (i.e. an initiator tRNA, GTP, and an IF2 or eIF2 complex), and an mRNA. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-30T01:25:00Z cellular_component owl:Class GO:0006580 biolink:NamedThing ethanolamine metabolic process The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). tmpzr1t_l9r_go_relaxed.owl ethanolamine metabolism GO:0006645 biological_process owl:Class GO:0036069 biolink:NamedThing light-dependent bacteriochlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, which occur in the presence of light. Bacteriochlorophylls are any of the chlorophylls of photosynthetic bacteria; they differ structurally from the chlorophylls of higher plants. tmpzr1t_l9r_go_relaxed.owl light-dependent bacteriochlorophyll synthesis|light-dependent bacteriochlorophyll biosynthesis|light-dependent bacteriochlorophyll formation|light dependent bacteriochlorophyll biosynthetic process|light-dependent bacteriochlorophyll anabolism bf 2011-12-15T04:45:16Z biological_process owl:Class GO:0030494 biolink:NamedThing bacteriochlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants. tmpzr1t_l9r_go_relaxed.owl bacteriochlorophyll synthesis|bacteriochlorophyll anabolism|bacteriochlorophyll formation|bacteriochlorophyll biosynthesis biological_process owl:Class GO:0106277 biolink:NamedThing biliverdin reductase (NADP+) activity Catalysis of the reaction: bilirubin + NADP+ = biliverdin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:15793|EC:1.3.1.24 hjd 2020-07-02T01:50:24Z molecular_function owl:Class GO:0004074 biolink:NamedThing biliverdin reductase (NAD(P)+) activity Catalysis of the reaction: bilirubin + NAD(P)+ = biliverdin + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl bilirubin:NAD(P)+ oxidoreductase activity EC:1.3.1.24|MetaCyc:BILIVERDIN-REDUCTASE-RXN|Reactome:R-HSA-189384 molecular_function owl:Class GO:0050297 biolink:NamedThing stizolobate synthase activity Catalysis of the reaction: 3,4-dihydroxy-L-phenylalanine + O2 = 4-(L-alanin-3-yl)-2-hydroxy-cis,cis-muconate 6-semialdehyde. tmpzr1t_l9r_go_relaxed.owl 3,4-dihydroxy-L-phenylalanine:oxygen 4,5-oxidoreductase (recyclizing) RHEA:21220|EC:1.13.11.29|MetaCyc:STIZOLOBATE-SYNTHASE-RXN molecular_function owl:Class GO:0061808 biolink:NamedThing negative regulation of DNA recombination at centromere Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination at the centromere. tmpzr1t_l9r_go_relaxed.owl negative regulation of centromeric recombination dph 2016-11-10T15:24:50Z biological_process owl:Class GO:0061806 biolink:NamedThing regulation of DNA recombination at centromere Any process that modulates the frequency, rate or extent of DNA recombination within centromeric DNA. tmpzr1t_l9r_go_relaxed.owl regulation of centromeric recombination dph 2016-11-10T15:17:11Z biological_process owl:Class GO:0002474 biolink:NamedThing antigen processing and presentation of peptide antigen via MHC class I The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl peptide antigen processing and presentation via MHC class I biological_process owl:Class GO:0071880 biolink:NamedThing adenylate cyclase-activating adrenergic receptor signaling pathway The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl activation of adenylate cyclase activity by adrenergic receptor signalling pathway|activation of adenylate cyclase activity by adrenergic receptor signaling pathway|adrenergic receptor, adenylyl cyclase activating pathway|adrenergic receptor, adenylate cyclase activating pathway mah 2010-09-13T04:21:28Z biological_process owl:Class GO:0097532 biolink:NamedThing stress response to acid chemical Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. tmpzr1t_l9r_go_relaxed.owl response to acid stress|stress response to acid pr 2013-11-12T13:04:15Z biological_process owl:Class GO:1904655 biolink:NamedThing positive regulation of lung alveolus development Any process that activates or increases the frequency, rate or extent of lung alveolus development. tmpzr1t_l9r_go_relaxed.owl activation of alveologenesis|up regulation of alveologenesis|up-regulation of alveologenesis|upregulation of alveolarization|up regulation of lung alveolus development|up-regulation of lung alveolus development|up regulation of alveolarization|upregulation of alveologenesis|positive regulation of alveolarization|up-regulation of alveolarization|positive regulation of alveologenesis|activation of lung alveolus development|activation of alveolarization|upregulation of lung alveolus development sl 2015-09-03T22:44:56Z biological_process owl:Class GO:0038114 biolink:NamedThing interleukin-21-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-21 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-21-mediated signaling pathway|interleukin-21-mediated signalling pathway bf 2012-03-22T10:21:01Z biological_process owl:Class GO:0052858 biolink:NamedThing peptidyl-lysine acetyltransferase activity Catalysis of the reaction: acetyl phosphate + peptidyl-L-lysine = phosphate + peptidyl-N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl acetyl-phosphate:peptidyl-L-lysine N6-acetyltransferase activity|peptidyl-lysine N6-acetyltransferase activity|peptidyl-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor|peptidyl-lysine N(6)-acetyltransferase activity|acetyl-phosphate:peptidyl-L-lysine 6-N-acetyltransferase activity molecular_function owl:Class GO:1904000 biolink:NamedThing positive regulation of eating behavior Any process that activates or increases the frequency, rate or extent of eating behavior. tmpzr1t_l9r_go_relaxed.owl upregulation of eating behavior|upregulation of eating behaviour|up-regulation of eating behaviour|up regulation of eating behavior|activation of eating behavior|up regulation of eating behaviour|activation of eating behaviour|up-regulation of eating behavior|positive regulation of eating behaviour sl 2015-03-05T20:40:35Z biological_process owl:Class GO:0035275 biolink:NamedThing dibutyl phthalate binding Binding to dibutyl phthalate, C(16)H(22)O(4). tmpzr1t_l9r_go_relaxed.owl phthalic acid dibutyl ester binding|DBP binding molecular_function owl:Class GO:1904420 biolink:NamedThing positive regulation of telomeric loop formation Any process that activates or increases the frequency, rate or extent of telomeric loop formation. tmpzr1t_l9r_go_relaxed.owl up-regulation of telomeric loop formation|up regulation of t-loop formation|activation of telomeric loop formation|upregulation of t-loop formation|upregulation of telomeric loop formation|activation of t-loop formation|positive regulation of t-loop formation|up-regulation of t-loop biosynthesis|upregulation of t-loop biosynthesis|up regulation of telomeric loop formation|positive regulation of t-loop biosynthesis|up-regulation of t-loop formation|activation of t-loop biosynthesis|up regulation of t-loop biosynthesis nc 2015-07-01T10:40:35Z biological_process owl:Class GO:0052753 biolink:NamedThing propan-2-ol:coenzyme F420 oxidoreductase activity Catalysis of the reaction: propan-2-ol + coenzyme F420 = acetone + reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl F420-dependent propan-2-ol dehydrogenase activity|F420-dependent secondary alcohol dehydrogenase activity|isopropanol:coenzyme F420 oxidoreductase activity 2011-09-21T05:15:28Z molecular_function owl:Class GO:2000985 biolink:NamedThing positive regulation of ATP citrate synthase activity Any process that activates or increases the frequency, rate or extent of ATP citrate synthase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity|positive regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)|positive regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]|positive regulation of ATP citrate (pro-S)-lyase activity|positive regulation of citrate-ATP lyase activity|positive regulation of citric cleavage enzyme activity|positive regulation of ATP-citrate (pro-S)-lyase activity|positive regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity|positive regulation of citrate cleavage enzyme activity|positive regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)|positive regulation of adenosine triphosphate citrate lyase activity|positive regulation of ATP-citrate (pro-S-)-lyase activity|positive regulation of ATP-citric lyase activity vk 2011-08-04T03:15:31Z biological_process owl:Class GO:0044291 biolink:NamedThing cell-cell contact zone Extended zone of intimate apposition between two cells containing one or more types of intercellular junctions, e.g., the intercalated disk of muscle. tmpzr1t_l9r_go_relaxed.owl cell cell contact zone NIF_Subcellular:sao1299635018 jl 2010-02-04T02:42:54Z cellular_component owl:Class GO:0048902 biolink:NamedThing anterior lateral line neuromast deposition The process in which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in the developing anterior lateral line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075720 biolink:NamedThing establishment of episomal latency A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a distinct genetic entity. tmpzr1t_l9r_go_relaxed.owl establishment as a plasmid prophage|establishment of plasmid latency jl 2009-11-26T03:57:44Z biological_process owl:Class GO:0019043 biolink:NamedThing establishment of viral latency A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects. tmpzr1t_l9r_go_relaxed.owl lysogenic commitment|phage lysogeny GO:0075601 biological_process owl:Class GO:0048229 biolink:NamedThing gametophyte development The process whose specific outcome is the progression of the gametophyte over time, from its formation to the mature structure. The gametophyte is the gamete-producing individual or phase in the life cycle having alternation of generations. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl gametogenesis biological_process owl:Class GO:1905129 biolink:NamedThing endocannabinoid signaling pathway involved in trans-synaptic signaling Any endocannabinoid signaling pathway that is involved in trans-synaptic signaling by endocannabinoid. tmpzr1t_l9r_go_relaxed.owl endocannabinoid signalling pathway involved in trans-synaptic signaling by endocannabinoid dos 2016-04-12T10:45:13Z biological_process owl:Class GO:0071926 biolink:NamedThing endocannabinoid signaling pathway The series of molecular signals generated as a consequence of an endocannabinoid binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. Endocannabinoids are small molecules derived from arachidonic acid, anandamide (arachidonoylethanolamide) and 2-arachidonoylglycerol. tmpzr1t_l9r_go_relaxed.owl endocannabinoid signalling pathway mah 2010-09-28T11:52:03Z biological_process owl:Class GO:1900138 biolink:NamedThing negative regulation of phospholipase A2 activity Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase A2 activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of secreted phospholipase A2 activity|inhibition of phosphatidylcholine 2-acylhydrolase activity|down regulation of phosphatidolipase activity|down-regulation of cytosolic phospholipase A2 activity|down-regulation of phosphatidase activity|downregulation of lecithinase A activity|down-regulation of phospholipase A|inhibition of phospholipase A2 activity|downregulation of phospholipase A2 activity|negative regulation of phosphatidylcholine 2-acylhydrolase activity|negative regulation of lecithinase A activity|inhibition of secreted phospholipase A2 activity|down regulation of phosphatidylcholine 2-acylhydrolase activity|inhibition of cytosolic phospholipase A2 activity|negative regulation of phosphatidase activity|down regulation of phosphatidase activity|inhibition of phospholipase A|down regulation of phospholipase A2 activity|downregulation of cytosolic phospholipase A2 activity|down regulation of secreted phospholipase A2 activity|negative regulation of phosphatidolipase activity|downregulation of phosphatidolipase activity|inhibition of phosphatidolipase activity|down-regulation of lecithinase A activity|negative regulation of cytosolic phospholipase A2 activity|down-regulation of phosphatidylcholine 2-acylhydrolase activity|down regulation of lecithinase A activity|inhibition of phosphatidase activity|down-regulation of phospholipase A2 activity|inhibition of lecithinase A activity|down regulation of phospholipase A|downregulation of secreted phospholipase A2 activity|down regulation of cytosolic phospholipase A2 activity|downregulation of phosphatidylcholine 2-acylhydrolase activity|downregulation of phosphatidase activity|negative regulation of phospholipase A|down-regulation of phosphatidolipase activity|down-regulation of secreted phospholipase A2 activity|downregulation of phospholipase A rph 2012-03-01T09:18:24Z biological_process owl:Class GO:0061619 biolink:NamedThing glycolytic process from mannose through fructose-6-phosphate The chemical reactions and pathways resulting in the breakdown of mannose into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-14T09:13:13Z biological_process owl:Class GO:0019309 biolink:NamedThing mannose catabolic process The chemical reactions and pathways resulting in the breakdown of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. tmpzr1t_l9r_go_relaxed.owl mannose breakdown|mannose catabolism|mannose degradation MetaCyc:MANNCAT-PWY biological_process owl:Class GO:0106276 biolink:NamedThing biliberdin reductase NAD+ activity Catalysis of the reaction: bilirubin + NAD+ = biliverdin + NADH+ H+. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.24|RHEA:15797 hjd 2020-07-02T01:48:07Z molecular_function owl:Class GO:0047396 biolink:NamedThing glycosylphosphatidylinositol diacylglycerol-lyase activity Catalysis of the reaction: 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol = 1,2-diacyl-sn-glycerol + 6-(alpha-D-glucosaminyl)-1D-myo-inositol 1,2-cyclic phosphate. tmpzr1t_l9r_go_relaxed.owl glycosyl inositol phospholipid anchor-hydrolyzing enzyme activity|6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol diacyl-sn-glycerol-lyase [6-(alpha-D-glucosaminyl)-1D-myo-inositol 1,2-cyclic phosphate-forming]|(glycosyl)phosphatidylinositol-specific phospholipase C activity|GPI-specific phospholipase C activity|variant-surface-glycoprotein phospholipase C activity|6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol diacylglycerol-lyase (1,2-cyclic-phosphate-forming) activity|glycosylphosphatidylinositol-specific phospholipase C activity|VSG-lipase activity|GPI-PLC activity|glycosylphosphatidylinositol-phospholipase C activity RHEA:14333|MetaCyc:3.1.4.47-RXN|EC:4.6.1.14 molecular_function owl:Class GO:1902871 biolink:NamedThing positive regulation of amacrine cell differentiation Any process that activates or increases the frequency, rate or extent of amacrine cell differentiation. tmpzr1t_l9r_go_relaxed.owl activation of amacrine neuron differentiation|up regulation of amacrine cell differentiation|up-regulation of amacrine neuron differentiation|upregulation of amacrine neuron differentiation|up-regulation of amacrine cell differentiation|activation of amacrine cell differentiation|positive regulation of amacrine neuron differentiation|up regulation of amacrine neuron differentiation|upregulation of amacrine cell differentiation mr 2014-04-03T15:24:46Z biological_process owl:Class GO:0016513 biolink:NamedThing core-binding factor complex A heterodimeric transcription factor complex that contains an alpha subunit (Runx1, Runx2 or Runx3 in human) that binds DNA and a non-DNA-binding beta subunit (CBFbeta), and binds to a consensus sequence 5'-YGYGGTY-3' found in several enhancers and promoters; the beta subunit enhances the DNA binding of the alpha subunit. tmpzr1t_l9r_go_relaxed.owl PEPB2 complex|CBF complex|AML1 complex cellular_component owl:Class GO:0001755 biolink:NamedThing neural crest cell migration The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032367 biolink:NamedThing intracellular cholesterol transport The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904294 biolink:NamedThing positive regulation of ERAD pathway Any process that activates or increases the frequency, rate or extent of ERAD pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of ER-associated degradation pathway|up regulation of ER-associated degradation pathway|upregulation of ERAD pathway|activation of ER-associated degradation pathway|positive regulation of endoplasmic reticulum-associated degradation|activation of endoplasmic reticulum-associated degradation|up regulation of endoplasmic reticulum-associated protein degradation pathway|upregulation of endoplasmic reticulum-associated protein degradation pathway|activation of ERAD pathway|up regulation of ERAD pathway|up-regulation of endoplasmic reticulum-associated protein degradation pathway|up regulation of endoplasmic reticulum-associated degradation|up-regulation of ERAD pathway|activation of endoplasmic reticulum-associated protein degradation pathway|up-regulation of ER-associated degradation pathway|up-regulation of endoplasmic reticulum-associated degradation|positive regulation of ER-associated degradation pathway|positive regulation of endoplasmic reticulum-associated protein degradation pathway|upregulation of endoplasmic reticulum-associated degradation bf 2015-06-09T14:44:39Z biological_process owl:Class GO:1905930 biolink:NamedThing regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching Any process that modulates the frequency, rate or extent of vascular smooth muscle cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism|regulation of vascular smooth muscle cell differentiation involved in phenotypic switching|regulation of VSMC differentiation involved in phenotypic dimorphism|regulation of VSMC differentiation involved in phenotypic switching|regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism rph 2017-02-09T09:20:59Z biological_process owl:Class GO:1905915 biolink:NamedThing regulation of cell differentiation involved in phenotypic switching Any process that modulates the frequency, rate or extent of cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl rph 2017-02-08T12:23:14Z biological_process owl:Class GO:0098860 biolink:NamedThing actin filament bundle of stereocilium A bundle of hundreds of cross-linked actin filaments (an actin cable), that is the supporting structure of a stereocilium. Filaments are oriented such that the the plus (barbed) ends are at the tip of the protrusion and are capped by a tip complex which bridges to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004956 biolink:NamedThing prostaglandin D receptor activity Combining with prostaglandin D (PGD(2)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PGD(2) receptor activity|PGD receptor activity molecular_function owl:Class GO:0004955 biolink:NamedThing prostaglandin receptor activity Combining with a prostaglandin (PG) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902157 biolink:NamedThing regulation of response to G2 DNA damage checkpoint signaling Any process that modulates the frequency, rate or extent of response to G2 DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of response to signal involved in G2/M transition DNA damage checkpoint|regulation of G2/M transition DNA damage checkpoint effector process jl 2013-05-21T15:45:06Z biological_process owl:Class GO:0098574 biolink:NamedThing cytoplasmic side of lysosomal membrane The side (leaflet) of the lysosomal membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl external leaflet of lysosomal membrane|external side of lysosomal membrane cellular_component owl:Class GO:0050511 biolink:NamedThing undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:N-acetyl-alpha-D-muramyl(oyl-L-Ala- gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol beta-1,4-N-acetylglucosaminlytransferase activity|undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase activity|MurG transferase activity|UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase activity|undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase activity RHEA:23192|MetaCyc:RXN-8976|EC:2.4.1.227 Note that EC classifies 'UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity ; GO:0051991' and 'undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity ; GO:0050511' under the same EC number, EC:2.4.1.227. molecular_function owl:Class GO:0034078 biolink:NamedThing butanediol catabolic process The chemical reactions and pathways resulting in the breakdown of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3. tmpzr1t_l9r_go_relaxed.owl butylene glycol catabolism|butanediol breakdown|butanediol utilization|butylene glycol catabolic process|butanediol catabolism|butanediol degradation biological_process owl:Class GO:0046325 biolink:NamedThing negative regulation of glucose import Any process that stops, prevents, or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl inhibition of glucose import|downregulation of glucose import|negative regulation of glucose uptake|down-regulation of glucose import|down regulation of glucose import biological_process owl:Class GO:0001607 biolink:NamedThing neuromedin U receptor activity Combining with neuromedin U to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl NMUR activity molecular_function owl:Class GO:0021534 biolink:NamedThing cell proliferation in hindbrain The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071221 biolink:NamedThing cellular response to bacterial lipopeptide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:28:03Z biological_process owl:Class GO:1905715 biolink:NamedThing regulation of cornification Any process that modulates the frequency, rate or extent of cornification. tmpzr1t_l9r_go_relaxed.owl pga 2016-11-24T13:52:55Z biological_process owl:Class GO:0090216 biolink:NamedThing positive regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity Any process that increases the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-12T10:00:45Z biological_process owl:Class GO:0007190 biolink:NamedThing activation of adenylate cyclase activity Any process that initiates the activity of the inactive enzyme adenylate cyclase. tmpzr1t_l9r_go_relaxed.owl adenylate cyclase activator|adenylate cyclase activation|adenylyl cyclase activation biological_process owl:Class GO:0018711 biolink:NamedThing benzoyl acetate-CoA thiolase activity Catalysis of the reaction: benzoyl acetyl-CoA + CoA = acetyl-CoA + benzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0243|MetaCyc:RXN-1305 molecular_function owl:Class GO:1901357 biolink:NamedThing beta-D-galactofuranose catabolic process The chemical reactions and pathways resulting in the breakdown of beta-D-galactofuranose. tmpzr1t_l9r_go_relaxed.owl beta-D-galactofuranose catabolism|beta-D-galactofuranose degradation|beta-D-galactofuranose breakdown di 2012-09-13T22:19:30Z biological_process owl:Class GO:0047932 biolink:NamedThing glucosamine N-acetyltransferase activity Catalysis of the reaction: D-glucosamine + acetyl-CoA = N-acetyl-D-glucosamine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl glucosamine acetylase activity|acetyl-CoA:D-glucosamine N-acetyltransferase activity|glucosamine acetyltransferase activity EC:2.3.1.3|KEGG_REACTION:R01204|MetaCyc:GLUCOSAMINE-N-ACETYLTRANSFERASE-RXN|RHEA:21332 molecular_function owl:Class GO:0050951 biolink:NamedThing sensory perception of temperature stimulus The series of events required for an organism to receive a sensory temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl sensory perception of thermal stimulus biological_process owl:Class GO:2000274 biolink:NamedThing regulation of epithelial cell migration, open tracheal system Any process that modulates the frequency, rate or extent of epithelial cell migration, open tracheal system. tmpzr1t_l9r_go_relaxed.owl regulation of tracheal cell migration|regulation of tracheal epithelial cell migration sart 2010-12-03T02:08:43Z biological_process owl:Class GO:0090349 biolink:NamedThing negative regulation of cellular organohalogen metabolic process Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:0033744 biolink:NamedThing L-methionine:thioredoxin-disulfide S-oxidoreductase activity Catalysis of the reaction: L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. tmpzr1t_l9r_go_relaxed.owl L-methionine:oxidized-thioredoxin S-oxidoreductase activity|methyl sulfoxide reductase I and II activity|methionine-S-oxide reductase activity|fSMsr|methionine sulfoxide reductase activity|L-methionine-(S)-S-oxide reductase activity|acetylmethionine sulfoxide reductase activity|free-methionine (S)-S-oxide reductase activity RHEA:19993|EC:1.8.4.13|KEGG_REACTION:R07606|MetaCyc:1.8.4.13-RXN GO:0000317 molecular_function owl:Class GO:0061478 biolink:NamedThing response to platelet aggregation inhibitor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet aggregation inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:09:37Z biological_process owl:Class GO:0002589 biolink:NamedThing regulation of antigen processing and presentation of peptide antigen via MHC class I Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl regulation of peptide antigen processing and presentation via MHC class I biological_process owl:Class GO:0030511 biolink:NamedThing positive regulation of transforming growth factor beta receptor signaling pathway Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl activation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor beta receptor signalling pathway|positive regulation of TGF-beta receptor signaling pathway|stimulation of transforming growth factor beta receptor signaling pathway|upregulation of transforming growth factor beta receptor signaling pathway|up-regulation of transforming growth factor beta receptor signaling pathway|up regulation of transforming growth factor beta receptor signaling pathway|positive regulation of TGFbeta receptor signaling pathway biological_process owl:Class GO:0045028 biolink:NamedThing G protein-coupled purinergic nucleotide receptor activity Combining with a purine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl purinergic nucleotide receptor activity, G-protein coupled|P2Y receptor|purinergic nucleotide receptor activity, G protein coupled|G-protein coupled purinergic nucleotide receptor activity|G protein coupled purinergic nucleotide receptor activity|P2Y molecular_function owl:Class GO:0060832 biolink:NamedThing oocyte animal/vegetal axis specification The establishment, maintenance and elaboration of the animal/vegetal axis in the oocyte. The animal/vegetal axis of an oocyte is defined by the placement of the nucleus in the oocyte and can sometimes be identified by the asymmetric placement of other substances such as yolk in the oocyte. The pole of the egg that is closest to the nucleus defines the animal end, with the axis passing through the nucleus. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T03:11:06Z biological_process owl:Class GO:0102888 biolink:NamedThing delta-cuprenene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> delta-cuprenene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8431 molecular_function owl:Class GO:0045456 biolink:NamedThing ecdysteroid biosynthetic process The chemical reactions and pathways resulting in the formation of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development. tmpzr1t_l9r_go_relaxed.owl ecdysteroid formation|ecdysteroid anabolism|ecdysteroid biosynthesis|ecdysteroid synthesis biological_process owl:Class GO:0099044 biolink:NamedThing vesicle tethering to endoplasmic reticulum The initial, indirect interaction between a transport vesicle membrane and the membrane of the endoplasmic reticulum. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior fusion. tmpzr1t_l9r_go_relaxed.owl tb 2013-01-08T15:07:50Z biological_process owl:Class GO:1900438 biolink:NamedThing negative regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl downregulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus|down regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus|inhibition of filamentous growth of a population of unicellular organisms in response to chemical stimulus|down-regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus di 2012-04-25T05:55:26Z biological_process owl:Class GO:0080086 biolink:NamedThing stamen filament development The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. tmpzr1t_l9r_go_relaxed.owl filament development dhl 2009-04-22T03:12:03Z biological_process owl:Class GO:1900055 biolink:NamedThing regulation of leaf senescence Any process that modulates the frequency, rate or extent of leaf senescence. tmpzr1t_l9r_go_relaxed.owl tb 2012-01-24T11:51:24Z biological_process owl:Class GO:1900931 biolink:NamedThing positive regulation of L-tyrosine import across plasma membrane Any process that activates or increases the frequency, rate or extent of L-tyrosine import into the cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of L-tyrosine uptake|up regulation of L-tyrosine import|up-regulation of L-tyrosine uptake|positive regulation of L-tyrosine import|upregulation of L-tyrosine import|activation of L-tyrosine uptake|up-regulation of L-tyrosine import|upregulation of L-tyrosine uptake|activation of L-tyrosine import|up regulation of L-tyrosine uptake al 2012-06-13T07:43:21Z biological_process owl:Class GO:0042418 biolink:NamedThing epinephrine biosynthetic process The chemical reactions and pathways resulting in the formation of epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. tmpzr1t_l9r_go_relaxed.owl epinephrine synthesis|epinephrine biosynthesis|adrenaline biosynthesis|epinephrine formation|epinephrine anabolism|adrenaline biosynthetic process biological_process owl:Class GO:0042414 biolink:NamedThing epinephrine metabolic process The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. tmpzr1t_l9r_go_relaxed.owl epinephrine metabolism|adrenaline metabolism|adrenaline metabolic process biological_process owl:Class GO:0140430 biolink:NamedThing positive regulation of chromosome passenger complex localization to kinetochore Any process that activates or increases the frequency, rate or extent of a chromosome passenger complex localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl pg 2020-02-19T05:19:45Z biological_process owl:Class GO:0050894 biolink:NamedThing determination of affect Any process in which an emotional response is associated with a particular sensory stimulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034489 biolink:NamedThing neutral amino acid transmembrane export from vacuole The directed movement of neutral amino acids out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052032 biolink:NamedThing modulation by symbiont of host inflammatory response Any process in which a symbiont modulates the frequency, rate or extent of the inflammatory response of the host organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of inflammatory response of other organism involved in symbiotic interaction GO:0052256 biological_process owl:Class GO:2000509 biolink:NamedThing negative regulation of dendritic cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:21:45Z biological_process owl:Class GO:2000508 biolink:NamedThing regulation of dendritic cell chemotaxis Any process that modulates the frequency, rate or extent of dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:21:38Z biological_process owl:Class GO:0018145 biolink:NamedThing protein-DNA covalent cross-linking via peptidyl-serine The formation of a covalent cross-link between DNA and a peptidyl-serine residue by the formation of O-(phospho-5'-DNA)-L-serine. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking via peptidyl-serine RESID:AA0246 biological_process owl:Class GO:1902735 biolink:NamedThing negative regulation of receptor-mediated virion attachment to host cell Any process that stops, prevents or reduces the frequency, rate or extent of receptor-mediated virion attachment to host cell. tmpzr1t_l9r_go_relaxed.owl downregulation of virion attachment, binding of host cell surface receptor|negative regulation of virion attachment, binding of host cell surface receptor|down-regulation of virion attachment, binding of host cell surface receptor|inhibition of virion attachment, binding of host cell surface receptor|inhibition of receptor-mediated virion attachment to host cell|down regulation of receptor-mediated virion attachment to host cell|down-regulation of receptor-mediated virion attachment to host cell|down regulation of virion attachment, binding of host cell surface receptor|downregulation of receptor-mediated virion attachment to host cell als 2014-02-25T12:26:06Z biological_process owl:Class GO:1902604 biolink:NamedThing p-aminobenzoyl-glutamate transmembrane transport The directed movement of N-(4-aminobenzoyl)-L-glutamate across a membrane. tmpzr1t_l9r_go_relaxed.owl N-(4-aminobenzoyl)-L-glutamate transmembrane transport pr 2013-12-20T11:09:20Z biological_process owl:Class GO:0004830 biolink:NamedThing tryptophan-tRNA ligase activity Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp). tmpzr1t_l9r_go_relaxed.owl tryptophanyl-tRNA synthase activity|tryptophan translase activity|tryptophanyl-transfer ribonucleic synthetase activity|tryptophanyl-transfer ribonucleate synthetase activity|tryptophanyl-transfer RNA synthetase activity|L-tryptophan:tRNATrp ligase (AMP-forming)|tryptophanyl ribonucleic synthetase activity|L-tryptophan-tRNATrp ligase (AMP-forming)|TrpRS activity|tryptophanyl-tRNA synthetase activity|L-tryptophan-tRNA(Trp) ligase (AMP-forming) activity|tryptophanyl-transfer ribonucleic acid synthetase activity RHEA:24080|Reactome:R-HSA-379977|EC:6.1.1.2|Reactome:R-HSA-380222|MetaCyc:TRYPTOPHAN--TRNA-LIGASE-RXN molecular_function owl:Class GO:0042265 biolink:NamedThing peptidyl-asparagine hydroxylation The hydroxylation of peptidyl-asparagine to form peptidyl-hydroxyasparagine. tmpzr1t_l9r_go_relaxed.owl peptidyl-aspartic acid/asparagine hydroxylation biological_process owl:Class GO:0120315 biolink:NamedThing positive regulation of oocyte karyosome formation Any process that activates or increases the frequency, rate or extent of oocyte karyosome formation, the chromosome organization process in which meiotic chromosomes in the oocyte nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21298 krc 2021-04-19T21:49:35Z biological_process owl:Class GO:0090437 biolink:NamedThing socket cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a socket cell, a shoot epidermal cell that surrounds a trichome and provides its support. tmpzr1t_l9r_go_relaxed.owl tb 2012-07-31T17:01:28Z biological_process owl:Class GO:0019487 biolink:NamedThing anaerobic acetylene catabolic process The chemical reactions and pathways involving acetylene, a colorless, volatile, explosive gas, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic acetylene catabolism|anaerobic ethyne catabolic process|anaerobic acetylene breakdown|anaerobic ethyne catabolism|anaerobic acetylene degradation MetaCyc:P161-PWY biological_process owl:Class GO:0004117 biolink:NamedThing calmodulin-dependent cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is regulated by calmodulin. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-111955 molecular_function owl:Class GO:1900747 biolink:NamedThing negative regulation of vascular endothelial growth factor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of vascular endothelial growth factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of vascular endothelial growth factor signalling pathway|down regulation of VEGF signaling|down-regulation of VEGF-activated signaling pathway|down regulation of vascular endothelial growth factor signaling pathway|downregulation of vascular endothelial growth factor signaling pathway|inhibition of vascular endothelial growth factor signalling pathway|inhibition of VEGF signaling|downregulation of VEGF signaling|down regulation of VEGF-activated signaling pathway|downregulation of VEGF-activated signaling pathway|negative regulation of VEGF-activated signaling pathway|inhibition of vascular endothelial growth factor signaling pathway|negative regulation of VEGF signaling|downregulation of vascular endothelial growth factor signalling pathway|inhibition of VEGF-activated signaling pathway|down-regulation of vascular endothelial growth factor signalling pathway|down regulation of vascular endothelial growth factor signalling pathway|down-regulation of VEGF signaling|down-regulation of vascular endothelial growth factor signaling pathway pm 2012-05-29T08:28:29Z biological_process owl:Class GO:0072164 biolink:NamedThing mesonephric tubule development The progression of a mesonephric tubule over time, from its initial formation to the mature structure. A mesonephric tubule is an epithelial tube that is part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:45:58Z biological_process owl:Class GO:0046248 biolink:NamedThing alpha-pinene biosynthetic process The chemical reactions and pathways resulting in the formation of alpha-pinene, a monoterpene that may be a significant factor affecting bacterial activities in nature. tmpzr1t_l9r_go_relaxed.owl alpha-pinene formation|alpha-pinene anabolism|alpha-pinene synthesis|alpha-pinene biosynthesis biological_process owl:Class GO:0046528 biolink:NamedThing imaginal disc fusion The process following disc eversion whereby imaginal discs fuse with adjacent disc derivatives to form a continuous adult epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048461 biolink:NamedThing flower structural organization The process that contributes to the act of creating the structural organization of the flower. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl flower structural organisation GO:0048412 biological_process owl:Class GO:0034736 biolink:NamedThing cholesterol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + cholesterol = a cholesterol ester + CoA. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:cholesterol O-acyltransferase activity|cholesteryl ester synthetase activity|acylcoenzyme A:cholesterol O-acyltransferase activity|acyl coenzyme A-cholesterol-O-acyltransferase activity|cholesterol acyltransferase activity|cholesterol ester synthetase activity|ACAT activity|acyl-CoA:cholesterol acyltransferase activity EC:2.3.1.26|Reactome:R-HSA-8876696|KEGG_REACTION:R01461|MetaCyc:STEROL-O-ACYLTRANSFERASE-RXN|RHEA:17729 molecular_function owl:Class GO:1902459 biolink:NamedThing positive regulation of stem cell population maintenance Any process that activates or increases the frequency, rate or extent of stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl up-regulation of stem cell maintenance|up-regulation of maintenance of pluripotency|upregulation of maintenance of pluripotency|positive regulation of maintenance of pluripotency|upregulation of stem cell maintenance|activation of stem cell maintenance|activation of maintenance of pluripotency|up regulation of stem cell maintenance|up regulation of maintenance of pluripotency cjm 2013-10-16T22:27:47Z biological_process owl:Class GO:0110158 biolink:NamedThing calpain complex A calcium-dependent protease complex that processes its substrate by limited proteolysis rather than degrading it. In some cases limited proteolysis is required for the activation of its substrate. tmpzr1t_l9r_go_relaxed.owl M-calpain|mu-calpain kmv 2019-07-15T18:30:51Z cellular_component owl:Class GO:0031682 biolink:NamedThing G-protein gamma-subunit binding Binding to a G-protein gamma subunit. tmpzr1t_l9r_go_relaxed.owl G-gamma protein subunit binding molecular_function owl:Class GO:0097524 biolink:NamedThing sperm plasma membrane A plasma membrane that is part of a sperm cell. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-18T11:31:17Z cellular_component owl:Class GO:0047935 biolink:NamedThing glucose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: D-glucose + NADP+ = D-glucono-1,5-lactone + NADPH. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide phosphate-linked aldohexose dehydrogenase activity|NADP-linked aldohexose dehydrogenase activity|NADP-dependent glucose dehydrogenase activity|D-glucose:NADP+ 1-oxidoreductase activity MetaCyc:GLUCOSE-1-DEHYDROGENASE-NADP+-RXN|RHEA:14405|EC:1.1.1.119 molecular_function owl:Class GO:0018305 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-serinyl tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl-L-serinyl tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-serinyl tetrairon tetrasulphide RESID:AA0288 biological_process owl:Class GO:0003680 biolink:NamedThing minor groove of adenine-thymine-rich DNA binding Binding to a DNA structure formed by the minor groove of adenine-thymine-rich DNA regions. Examples of proteins having this function are AT-rich interaction domain (ARID)-containing proteins. tmpzr1t_l9r_go_relaxed.owl AT-rich DNA binding|AT DNA binding|AT binding https://github.com/geneontology/go-ontology/issues/19695 molecular_function owl:Class GO:0016363 biolink:NamedThing nuclear matrix The dense fibrillar network lying on the inner side of the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl nucleoskeleton Wikipedia:Nuclear_matrix cellular_component owl:Class GO:0071774 biolink:NamedThing response to fibroblast growth factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fibroblast growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to FGF stimulus|response to fibroblast growth factor stimulus mah 2010-08-31T11:06:32Z biological_process owl:Class GO:0052874 biolink:NamedThing FMN reductase (NADH) activity Catalysis of the reaction: FMNH2 + NAD+ = FMN + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl FMNH2:NAD+ oxidoreductase activity|NADH:FMN oxidoreductase activity|NADH2:FMN oxidoreductase activity|NADH(2) dehydrogenase (FMN) activity|SsuE|NADH-FMN reductase activity|NADH(2):FMN oxidoreductase activity|flavin mononucleotide reductase activity|flavine mononucleotide reductase activity|NADH:flavin oxidoreductase activity|NADH2 dehydrogenase (FMN)|NADH dehydrogenase (FMN) activity|NADH-dependent FMN reductase activity RHEA:21620|KEGG_REACTION:R05705|EC:1.5.1.39 molecular_function owl:Class GO:1903223 biolink:NamedThing positive regulation of oxidative stress-induced neuron death Any process that activates or increases the frequency, rate or extent of oxidative stress-induced neuron death. tmpzr1t_l9r_go_relaxed.owl upregulation of neuronal cell death in response to oxidative stress|activation of oxidative stress-induced neuron death|activation of neuron death in response to oxidative stress|activation of neuronal cell death in response to oxidative stress|upregulation of oxidative stress-induced neuron death|sensitization of neuron to oxidative stress-induced cell death|upregulation of neuron death in response to oxidative stress|positive regulation of neuronal cell death in response to oxidative stress|up regulation of neuronal cell death in response to oxidative stress|up regulation of neuron death in response to oxidative stress|up regulation of oxidative stress-induced neuron death|up-regulation of oxidative stress-induced neuron death|up-regulation of neuron death in response to oxidative stress|positive regulation of neuron death in response to oxidative stress|up-regulation of neuronal cell death in response to oxidative stress bf 2014-07-29T08:51:52Z biological_process owl:Class GO:0034812 biolink:NamedThing 9,10-dihydroxybenzo(a)pyrene dioxygenase activity Catalysis of the reaction: 9,10-dihydroxybenzo(a)pyrene + O2 = cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1134 molecular_function owl:Class GO:0047591 biolink:NamedThing 5-hydroxypentanoate CoA-transferase activity Catalysis of the reaction: 5-hydroxypentanoate + acetyl-CoA = 5-hydroxy-pentanoyl-CoA + acetate. tmpzr1t_l9r_go_relaxed.owl 5-hydroxyvalerate coenzyme A transferase activity|acetyl-CoA:5-hydroxypentanoate CoA-transferase activity|5-hydroxyvalerate CoA-transferase activity MetaCyc:5-HYDROXYPENTANOATE-COA-TRANSFERASE-RXN|RHEA:23496|EC:2.8.3.14|KEGG_REACTION:R04057 molecular_function owl:Class GO:0034247 biolink:NamedThing snoRNA splicing The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000338 biolink:NamedThing regulation of chemokine (C-X-C motif) ligand 1 production Any process that modulates the frequency, rate or extent of chemokine (C-X-C motif) ligand 1 production. tmpzr1t_l9r_go_relaxed.owl regulation of keratinocyte derived chemokine production|regulation of KC production|regulation of SCYB1 production|regulation of CXCL1 production mah 2011-02-01T10:46:27Z biological_process owl:Class GO:0072067 biolink:NamedThing early distal convoluted tubule development The process whose specific outcome is the progression of the early distal convoluted tubule over time, from its formation to the mature structure. The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:15:17Z biological_process owl:Class GO:0004663 biolink:NamedThing Rab geranylgeranyltransferase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl-diphosphate,geranylgeranyl-diphosphate:protein-cysteine geranyltransferase activity|RabGGTase activity|protein geranylgeranyltransferase type II activity|GGTase-II activity|GGTaseII activity|Rab-protein geranylgeranyltransferase activity|type II protein geranyl-geranyltransferase activity MetaCyc:2.5.1.60-RXN|MetaCyc:RXN-3701|EC:2.5.1.60 molecular_function owl:Class GO:0048509 biolink:NamedThing regulation of meristem development Any process that modulates the frequency, rate or extent of meristem development, the biological process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106120 biolink:NamedThing positive regulation of sterol biosynthetic process Any process that activates or increases the frequency, rate or extent of a sterol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-19T17:48:21Z biological_process owl:Class GO:1902228 biolink:NamedThing positive regulation of macrophage colony-stimulating factor signaling pathway Any process that activates or increases the frequency, rate or extent of macrophage colony-stimulating factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of macrophage colony-stimulating factor signaling pathway|activation of M-CSF signaling pathway|upregulation of M-CSF signaling pathway|activation of macrophage colony-stimulating factor signaling pathway|up regulation of macrophage colony-stimulating factor signaling pathway|positive regulation of macrophage colony-stimulating factor signalling pathway|upregulation of macrophage colony-stimulating factor signaling pathway|up regulation of M-CSF signaling pathway|positive regulation of M-CSF signaling pathway|upregulation of macrophage colony-stimulating factor signalling pathway|up-regulation of macrophage colony-stimulating factor signalling pathway|up-regulation of M-CSF signaling pathway|activation of macrophage colony-stimulating factor signalling pathway|up regulation of macrophage colony-stimulating factor signalling pathway lb 2013-06-14T06:29:00Z biological_process owl:Class GO:0103106 biolink:NamedThing brassinolide 23-O-glucosyltransferase activity Catalysis of the reaction: brassinolide + UDP-alpha-D-glucose <=> brassinolide-23-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4397 molecular_function owl:Class GO:1900394 biolink:NamedThing regulation of kojic acid biosynthetic process Any process that modulates the frequency, rate or extent of kojic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism|regulation of C6H6O4 biosynthesis|regulation of C6H6O4 synthesis|regulation of kojic acid synthesis|regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis|regulation of kojic acid biosynthesis|regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process|regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation|regulation of C6H6O4 formation|regulation of kojic acid formation|regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis|regulation of C6H6O4 biosynthetic process|regulation of C6H6O4 anabolism|regulation of kojic acid anabolism di 2012-04-18T04:19:53Z biological_process owl:Class GO:0033041 biolink:NamedThing sweet taste receptor activity Combining with soluble sweet compounds to initiate a change in cell activity. These receptors are responsible for the sense of sweet taste. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0038122 biolink:NamedThing C-C motif chemokine 5 receptor activity Combining with the C-C motif chemokine 5 (CCL5) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl RANTES receptor activity|CCL5 receptor activity|small inducible cytokine A5 receptor activity bf 2012-03-22T01:36:00Z molecular_function owl:Class GO:0106320 biolink:NamedThing (R)-limonene 1,2-monooxygenase NADPH activity Catalysis of the reaction: (4R)-limonene + NADPH + H+ + O2 = NADP+ + H2O + (4R)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.107|RHEA:26097 hjd 2020-09-23T15:20:57Z molecular_function owl:Class GO:0018635 biolink:NamedThing (R)-limonene 1,2-monooxygenase activity Catalysis of the reaction: (4R)-limonene + NAD(P)H + H+ + O2 = NAD(P)+ + H2O + (4R)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl (+)-limonene,NAD(P)H:oxygen oxidoreductase activity|(+)-limonene 1,2-monooxygenase activity|(R)-limonene,NAD(P)H:oxygen oxidoreductase activity UM-BBD_reactionID:r0733|KEGG_REACTION:R06398|KEGG_REACTION:R09393|MetaCyc:RXN-9407|EC:1.14.13.107 molecular_function owl:Class GO:0034785 biolink:NamedThing salicylate 5-hydroxylase activity Catalysis of the reaction: salicylate + O2 + NAD(P)H + H+ = gentisate + H2O + NAD(P)+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1034|MetaCyc:RXN-10446|RHEA:35307|EC:1.14.13.172 molecular_function owl:Class GO:0047519 biolink:NamedThing quinate dehydrogenase (quinone) activity Catalysis of the reaction: (-)-quinate + pyrroloquinoline-quinone = (-)-3-dehydroquinate + pyrroloquinoline-quinol. tmpzr1t_l9r_go_relaxed.owl quinate:quinone 3-oxidoreductase activity|NAD(P)-independent quinate dehydrogenase activity|quinate:pyrroloquinoline-quinone 5-oxidoreductase activity RHEA:23672|EC:1.1.5.8|KEGG_REACTION:R01873|MetaCyc:1.1.99.25-RXN molecular_function owl:Class GO:2000896 biolink:NamedThing amylopectin metabolic process The chemical reactions and pathways involving an amylopectin. tmpzr1t_l9r_go_relaxed.owl Amylopectin metabolism jl 2011-07-28T02:47:25Z biological_process owl:Class GO:0044016 biolink:NamedThing histone acetyltransferase activity (H3-K4 specific) Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 4) = CoA + histone H3 N6-acetyl-L-lysine (position 4). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H3-K4 specific) molecular_function owl:Class GO:0044358 biolink:NamedThing envenomation resulting in hemorrhagic damage to other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with vascular damage and hemorrhage in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-26T04:24:59Z biological_process owl:Class GO:0047327 biolink:NamedThing glycerol-3-phosphate-glucose phosphotransferase activity Catalysis of the reaction: sn-glycerol 3-phosphate + D-glucose = D-glucose 6-phosphate + glycerol. tmpzr1t_l9r_go_relaxed.owl sn-glycerol-3-phosphate:D-glucose 6-phosphotransferase activity MetaCyc:2.7.1.142-RXN|KEGG_REACTION:R00850|EC:2.7.1.142|RHEA:21288 molecular_function owl:Class GO:0014879 biolink:NamedThing detection of electrical stimulus involved in regulation of muscle adaptation The series of events by which an electrical stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014878 biolink:NamedThing response to electrical stimulus involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl response to electrical stimulus involved in regulation of muscle plasticity biological_process owl:Class GO:0004369 biolink:NamedThing glycerol-3-phosphate oxidase activity Catalysis of the reaction: sn-glycerol 3-phosphate + O(2) = glycerone phosphate + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl L-alpha-glycerophosphate oxidase activity|glycerol phosphate oxidase activity|sn-glycerol-3-phosphate:oxygen 2-oxidoreductase activity|L-alpha-glycerol-3-phosphate oxidase activity|glycerol-1-phosphate oxidase activity|alpha-glycerophosphate oxidase activity EC:1.1.3.21|RHEA:18369|MetaCyc:GLYCEROL-3-PHOSPHATE-OXIDASE-RXN|KEGG_REACTION:R00846 molecular_function owl:Class GO:1901483 biolink:NamedThing regulation of transcription factor catabolic process Any process that modulates the frequency, rate or extent of transcription factor catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of sequence-specific DNA binding transcription factor catabolic process|regulation of transcription factor catabolism|regulation of transcription factor degradation|regulation of proteasome-mediated transcription factor catabolism|regulation of transcription factor breakdown bf 2012-10-08T09:03:18Z biological_process owl:Class GO:0034939 biolink:NamedThing 5-hydroxypyrrole-2-carboxylate tautomerase activity Catalysis of the reaction: 5-hydroxypyrrole-2-carboxylate = 5-oxo-4,5-dihydropyrrole-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0969 molecular_function owl:Class GO:0034524 biolink:NamedThing 2-hydroxyisophthalate decarboxylase activity Catalysis of the reaction: 2-hydroxyisophthalic acid = salicylate + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0776 molecular_function owl:Class GO:1903423 biolink:NamedThing positive regulation of synaptic vesicle recycling Any process that activates or increases the frequency, rate or extent of synaptic vesicle recycling. tmpzr1t_l9r_go_relaxed.owl up-regulation of kiss-and-stay synaptic vesicle recycling|upregulation of kiss-and-run synaptic vesicle recycling|up-regulation of synaptic vesicle recycling|activation of synaptic vesicle recycling|activation of kiss-and-stay synaptic vesicle recycling|up regulation of synaptic vesicle recycling|activation of kiss-and-run synaptic vesicle recycling|positive regulation of kiss-and-stay synaptic vesicle recycling|positive regulation of kiss-and-run synaptic vesicle recycling|up regulation of kiss-and-stay synaptic vesicle recycling|up-regulation of kiss-and-run synaptic vesicle recycling|up regulation of kiss-and-run synaptic vesicle recycling|upregulation of synaptic vesicle recycling|upregulation of kiss-and-stay synaptic vesicle recycling An example of this is mouse LRRK2 (Q5S006) in PMID:21307259 inferred from mutant phenotype pad 2014-09-09T15:28:07Z biological_process owl:Class GO:0061161 biolink:NamedThing positive regulation of establishment of bipolar cell polarity regulating cell shape Any process that increases the rate, frequency or extent of the establishment of bipolar cell polarity that regulates the shape of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-23T09:26:45Z biological_process owl:Class GO:2000247 biolink:NamedThing positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape Any process that activates or increases the frequency, rate or extent of establishment or maintenance of bipolar cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl vw 2010-11-11T11:39:34Z biological_process owl:Class GO:0061374 biolink:NamedThing mammillothalamic axonal tract development The progression of the mammillothalamic axonal tract, from its formation to the mature structure. The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T08:54:43Z biological_process owl:Class GO:0002620 biolink:NamedThing negative regulation of non-professional antigen presenting cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of non-professional antigen presenting cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl inhibition of non-professional antigen presenting cell antigen processing and presentation|downregulation of non-professional antigen presenting cell antigen processing and presentation|down regulation of non-professional antigen presenting cell antigen processing and presentation|down-regulation of non-professional antigen presenting cell antigen processing and presentation biological_process owl:Class GO:0075029 biolink:NamedThing formation of appressorium germ tube hook structure The development of a swollen tip at the growing end of a symbiont spore which usually flattens against the host cell surface prior to appressorium formation. tmpzr1t_l9r_go_relaxed.owl formation of germ tube tip of symbiont on or near the exterior of host|symbiont germ tube hook structure formation on or near host|formation of symbiont germ tube hook structure on or near host|formation of symbiont germ tube hook structure for appressorium development biological_process owl:Class GO:1905941 biolink:NamedThing positive regulation of gonad development Any process that activates or increases the frequency, rate or extent of gonad development. tmpzr1t_l9r_go_relaxed.owl upregulation of gonad development|activation of gonad development|upregulation of gonadogenesis|positive regulation of gonadogenesis|up-regulation of gonadogenesis|up-regulation of gonad development|activation of gonadogenesis|up regulation of gonadogenesis|up regulation of gonad development hbye 2017-02-09T17:02:08Z biological_process owl:Class GO:0009269 biolink:NamedThing response to desiccation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. tmpzr1t_l9r_go_relaxed.owl desiccation tolerance biological_process owl:Class GO:0050176 biolink:NamedThing phenylalanine N-acetyltransferase activity Catalysis of the reaction: L-phenylalanine + acetyl-CoA = N-acetyl-L-phenylalanine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA-L-phenylalanine alpha-N-acetyltransferase activity|acetyl-CoA:L-phenylalanine N-acetyltransferase activity RHEA:17801|KEGG_REACTION:R00693|EC:2.3.1.53|MetaCyc:PHENYLALANINE-N-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0042251 biolink:NamedThing maintenance of polarity of larval imaginal disc epithelium The maintenance of an established polarized larval imaginal disc epithelium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000717 biolink:NamedThing nucleotide-excision repair, DNA duplex unwinding The unwinding, or local denaturation, of the DNA duplex to create a bubble around the site of the DNA damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034279 biolink:NamedThing syn-pimara-7,15-diene synthase activity Catalysis of the reaction: 9-alpha-copalyl diphosphate = 9-beta-pimara-7,15-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl 9alpha-copalyl-diphosphate diphosphate-lyase (9beta-pimara-7,15-diene-forming) activity RHEA:25560|KEGG_REACTION:R09117|MetaCyc:RXN-4883|EC:4.2.3.35 molecular_function owl:Class GO:0003777 biolink:NamedThing microtubule motor activity A motor activity that generates movement along a microtubule, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl dynein|ATP-dependent microtubule motor activity|kinesin|kinetochore motor activity|kinesin motor activity|dynein ATPase activity|axonemal motor activity https://github.com/geneontology/go-ontology/issues/18664 Reactome:R-HSA-9610627|Reactome:R-HSA-177479|Reactome:R-HSA-265160 Consider also annotating to the molecular function term 'microtubule binding ; GO:0008017'. vw 2016-04-04T10:59:42Z GO:1990939 molecular_function owl:Class GO:0140550 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of phosphatidylinositol-4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20361 pg 2020-11-12T13:01:17Z molecular_function owl:Class GO:0090565 biolink:NamedThing protein-phosphocysteine-mannitol phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + mannitol(out) = protein cysteine + mannitol phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl tb 2014-04-08T15:03:08Z molecular_function owl:Class GO:1990406 biolink:NamedThing CGRP receptor complex A transmembrane, G protein-coupled signalling receptor complex recognized by calcitonin gene-related peptides (CGRP). tmpzr1t_l9r_go_relaxed.owl CGRP-R complex|calcitonin gene-related polypeptide receptor complex|Calcitonin-gene-related peptide receptor complex An example of this is CALCRL in human (Q16602) in PMID:20826335 (inferred from direct assay). bhm 2014-07-01T14:57:43Z cellular_component owl:Class GO:0019762 biolink:NamedThing glucosinolate catabolic process The chemical reactions and pathways resulting in the breakdown of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl glucosinolate breakdown|glucosinolate degradation|glucosinolate catabolism MetaCyc:PWY-5267 biological_process owl:Class GO:0019759 biolink:NamedThing glycosinolate catabolic process The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. tmpzr1t_l9r_go_relaxed.owl glycosinolate catabolism|glycosinolate degradation|glycosinolate breakdown biological_process owl:Class GO:0047713 biolink:NamedThing galactitol 2-dehydrogenase activity Catalysis of the reaction: galactitol + NAD(+) = D-tagatose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.16|KEGG_REACTION:R02928|MetaCyc:GALACTITOL-2-DEHYDROGENASE-RXN|RHEA:20685 molecular_function owl:Class GO:0071119 biolink:NamedThing alpha7-beta1 integrin-nicotinamide riboside kinase complex A protein complex that consists of an alpha7-beta1 integrin complex bound to nicotinamide riboside kinase 2 (also known as muscle integrin binding protein, MIBP). tmpzr1t_l9r_go_relaxed.owl ITGA7-ITGB1-ITGB1BP3 complex mah 2009-11-13T02:20:44Z cellular_component owl:Class GO:0045226 biolink:NamedThing extracellular polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures. tmpzr1t_l9r_go_relaxed.owl extracellular polysaccharide anabolism|extracellular polysaccharide biosynthesis|extracellular polysaccharide synthesis|extracellular polysaccharide formation biological_process owl:Class GO:0015661 biolink:NamedThing L-lysine efflux transmembrane transporter activity Enables the transfer of L-lysine from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl L-lysine exporter activity|L-lysine, 2,6-diaminohexanoic acid efflux transmembrane transporter activity molecular_function owl:Class GO:0080147 biolink:NamedThing root hair cell development The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dhl 2010-03-26T01:45:08Z biological_process owl:Class GO:0034281 biolink:NamedThing ent-isokaurene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-isokaurene + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047715 biolink:NamedThing hypotaurocyamine kinase activity Catalysis of the reaction: ATP + hypotaurocyamine = N(omega)-phosphohypotaurocyamine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:hypotaurocyamine N-phosphotransferase activity MetaCyc:HYPOTAUROCYAMINE-KINASE-RXN|KEGG_REACTION:R03939|RHEA:24008|EC:2.7.3.6 molecular_function owl:Class GO:0044658 biolink:NamedThing pore formation in membrane of host by symbiont The aggregation, arrangement and bonding together of a set of components by an organism to form a pore complex in a membrane of a host organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-01T13:14:42Z biological_process owl:Class GO:0034934 biolink:NamedThing phenanthrene-4-carboxylate dioxygenase activity Catalysis of the reaction: phenanthrene-4-carboxylate + 2 H+ + 2 e- + O2 = cis-3,4-phenanthrenedihydrodiol-4-carboxylate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0939|EC:1.13.11.- molecular_function owl:Class GO:0062001 biolink:NamedThing negative regulation of cardiac endothelial to mesenchymal transition Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac endothelial to mesenchymal transition. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-16T16:36:48Z biological_process owl:Class GO:0097289 biolink:NamedThing alpha-ribazole metabolic process The chemical reactions and pathways involving alpha-ribazole, the benzimidazole nucleoside in adenosyl cobalamin (vitamin B12). tmpzr1t_l9r_go_relaxed.owl alpha-ribazole metabolism pr 2012-04-25T11:49:24Z biological_process owl:Class GO:0006673 biolink:NamedThing inositol phosphoceramide metabolic process The chemical reactions and pathways involving inositol phosphoceramides, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group. tmpzr1t_l9r_go_relaxed.owl inositol phosphorylceramide metabolic process|inositol phosphorylceramide metabolism|inositolphosphoceramide metabolism GO:0006674 biological_process owl:Class GO:0051786 biolink:NamedThing all-trans-retinol 13,14-reductase activity Catalysis of the reaction: all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH(2). Note that this reaction has only been observed to occur in the opposite direction. tmpzr1t_l9r_go_relaxed.owl RetSat activity|(13,14)-all-trans-retinol saturase activity|all-trans-13,14-dihydroretinol:acceptor 13,14-oxidoreductase activity|retinol saturase activity|all-trans-retinol:all-trans-13,14-dihydroretinol saturase activity MetaCyc:1.3.99.23-RXN|Reactome:R-HSA-8956427|RHEA:19193|KEGG_REACTION:R07163|EC:1.3.99.23 molecular_function owl:Class GO:0048279 biolink:NamedThing vesicle fusion with endoplasmic reticulum The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl vesicle fusion with ER biological_process owl:Class GO:1902323 biolink:NamedThing negative regulation of methyl-branched fatty acid biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of methyl-branched fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of methyl-branched fatty acid biosynthetic process|negative regulation of methyl-branched fatty acid synthesis|downregulation of methyl-branched fatty acid biosynthesis|downregulation of methyl-branched fatty acid synthesis|downregulation of methyl-branched fatty acid anabolism|inhibition of methyl-branched fatty acid biosynthetic process|down regulation of methyl-branched fatty acid biosynthesis|down regulation of methyl-branched fatty acid formation|down regulation of methyl-branched fatty acid anabolism|down regulation of methyl-branched fatty acid biosynthetic process|negative regulation of methyl-branched fatty acid anabolism|down-regulation of methyl-branched fatty acid anabolism|inhibition of methyl-branched fatty acid formation|negative regulation of methyl-branched fatty acid formation|down regulation of methyl-branched fatty acid synthesis|down-regulation of methyl-branched fatty acid synthesis|inhibition of methyl-branched fatty acid biosynthesis|downregulation of methyl-branched fatty acid formation|downregulation of methyl-branched fatty acid biosynthetic process|down-regulation of methyl-branched fatty acid biosynthesis|down-regulation of methyl-branched fatty acid formation|inhibition of methyl-branched fatty acid anabolism|inhibition of methyl-branched fatty acid synthesis|negative regulation of methyl-branched fatty acid biosynthesis kmv 2013-07-24T20:15:23Z biological_process owl:Class GO:1903936 biolink:NamedThing cellular response to sodium arsenite Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium arsenite stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-12T20:54:53Z biological_process owl:Class GO:1903935 biolink:NamedThing response to sodium arsenite Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium arsenite stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-12T20:54:33Z biological_process owl:Class GO:0000387 biolink:NamedThing spliceosomal snRNP assembly The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. tmpzr1t_l9r_go_relaxed.owl spliceosomal snRNP biogenesis biological_process owl:Class GO:0015727 biolink:NamedThing lactate transport The directed movement of lactate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lactate is 2-hydroxypropanoate, CH3-CHOH-COOH; L(+)-lactate is formed by anaerobic glycolysis in animal tissues, and DL-lactate is found in sour milk, molasses and certain fruit juices. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034998 biolink:NamedThing oligosaccharyltransferase I complex An oligosaccharyltransferase (OST) complex that contains at least seven polypeptides and is the major OST complex in mammalian cells. Of the three forms of mammalian OST complex identified, the OSTI complex has the weakest affinity for ribosomes. tmpzr1t_l9r_go_relaxed.owl OSTCI cellular_component owl:Class GO:0061221 biolink:NamedThing mesonephric mesenchyme morphogenesis The process in which the anatomical structures of a mesonephric mesenchymal tissue are generated and organized. Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T01:17:38Z biological_process owl:Class GO:0007189 biolink:NamedThing adenylate cyclase-activating G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl G protein signaling, adenylate cyclase activating pathway|G protein signalling, adenylyl cyclase activating pathway|G protein signalling, adenylate cyclase activating pathway|G-protein signalling, adenylate cyclase activating pathway|positive regulation of adenylate cyclase activity by G-protein signaling pathway|G-protein signalling, adenylyl cyclase activating pathway|G-protein signaling, adenylyl cyclase activating pathway|positive regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway|G protein signaling, adenylyl cyclase activating pathway|adenylate cyclase-activating GPCR signaling pathway|GPCR signaling pathway via activation of adenylate cyclase activity|GPCR signaling pathway via activation of adenylate cyclase|positive regulation of adenylate cyclase activity by G-protein signalling pathway|activation of adenylate cyclase activity by G-protein signaling pathway|activation of adenylate cyclase activity involved in G-protein signaling|G-protein signaling, adenylate cyclase activating pathway This term can be used to annotate ligands, receptors and G-proteins that lead to activation of adenylate cyclase activity within a signaling pathway. GO:0010579|GO:0010580 biological_process owl:Class GO:0071995 biolink:NamedThing phytochelatin import into vacuole The directed movement of phytochelatins into the vacuole. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. tmpzr1t_l9r_go_relaxed.owl phytochelatin transport into vacuole|cadystin import into vacuole mah 2010-10-25T02:01:59Z biological_process owl:Class GO:0030232 biolink:NamedThing insulin control element activator complex Transcription factor complex that binds to the insulin control element (ICE), a DNA sequence element found within the 5'-flanking region of the insulin gene, and activates ICE-mediated transcription. tmpzr1t_l9r_go_relaxed.owl ICE activator complex cellular_component owl:Class GO:0070003 biolink:NamedThing threonine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035508 biolink:NamedThing positive regulation of myosin-light-chain-phosphatase activity Any process that activates or increases the frequency, rate or extent of myosin-light-chain-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:55:05Z biological_process owl:Class GO:1901333 biolink:NamedThing positive regulation of lateral root development Any process that activates or increases the frequency, rate or extent of lateral root development. tmpzr1t_l9r_go_relaxed.owl activation of lateral root development|up regulation of lateral root development|upregulation of lateral root development|up-regulation of lateral root development tb 2012-09-01T00:59:46Z biological_process owl:Class GO:0016099 biolink:NamedThing monoterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of monoterpenoid compounds, terpenoids having a C10 skeleton. tmpzr1t_l9r_go_relaxed.owl monoterpenoid anabolism|monoterpenoid formation|monoterpenoid synthesis|monoterpenoid biosynthesis MetaCyc:PWY-3041 biological_process owl:Class GO:0046945 biolink:NamedThing N-terminal peptidyl-alanine N-carbamoylation The carbamylation of the N-terminal alanine of proteins to form the derivative N-carbamoyl-L-alanine. tmpzr1t_l9r_go_relaxed.owl N-terminal peptidyl-alanine N-carbamylation RESID:AA0343 biological_process owl:Class GO:0046944 biolink:NamedThing protein carbamoylation The addition of a carbamoyl group to a protein amino acid. A carbamoyl group is the acyl group -CO-NH2. tmpzr1t_l9r_go_relaxed.owl protein amino acid carbamoylation biological_process owl:Class GO:2001247 biolink:NamedThing positive regulation of phosphatidylcholine biosynthetic process Any process that activates or increases the frequency, rate or extent of phosphatidylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of phosphatidylcholine anabolism|positive regulation of phosphatidylcholine synthesis|positive regulation of phosphatidylcholine formation|positive regulation of phosphatidylcholine biosynthesis tb 2011-11-28T09:47:54Z biological_process owl:Class GO:0150173 biolink:NamedThing positive regulation of phosphatidylcholine metabolic process Any process that activates or increases the frequency, rate or extent of phosphatidylcholine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:03:28Z biological_process owl:Class GO:0018050 biolink:NamedThing C-terminal peptidyl-threonine amidation The formation of a C-terminal peptidyl-threonine amide by hydrolysis and oxidation of an interior Thr-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0097 biological_process owl:Class GO:0035346 biolink:NamedThing positive regulation of hypoxanthine transport Any process that activates or increases the frequency, rate or extent of the directed movement of hypoxanthine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl positive regulation of 6-hydroxypurine transport bf 2010-03-04T10:42:48Z biological_process owl:Class GO:0008420 biolink:NamedThing RNA polymerase II CTD heptapeptide repeat phosphatase activity Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. tmpzr1t_l9r_go_relaxed.owl CTD phosphatase activity|RNA polymerase II carboxy-terminal domain phosphatase activity molecular_function owl:Class GO:0052165 biolink:NamedThing symbiont defense to host-produced phytoalexin Any process in which a symbiont modulates the frequency, rate or extent of production of phytoalexins as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of phytoalexin production in other organism involved in symbiotic interaction|evasion or tolerance of phytoalexins|phytoalexin detoxification|host phytoalexin detoxification|modulation by symbiont of host phytoalexin production|response to host phytoalexin production|response to phytoalexin production by other organism involved in symbiotic interaction|evasion or tolerance by symbiont of host-produced phytoalexins|evasion or tolerance of phytoalexins produced by host in response to organism https://github.com/geneontology/go-ontology/issues/18798 GO:0052304|GO:0052378|GO:0052061|GO:0052549|GO:0052566 biological_process owl:Class GO:0070133 biolink:NamedThing negative regulation of mitochondrial translational initiation Any process that stops, prevents, or reduces the frequency, rate or extent of the process preceding formation of the peptide bond between the first two amino acids of a protein in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitochondrial translation initiation biological_process owl:Class GO:0045993 biolink:NamedThing negative regulation of translational initiation by iron Any process involving iron that stops, prevents or reduces the rate of translational initiation. tmpzr1t_l9r_go_relaxed.owl downregulation of translational initiation by iron|inhibition of translational initiation by iron|down-regulation of translational initiation by iron|down regulation of translational initiation by iron biological_process owl:Class GO:0006447 biolink:NamedThing regulation of translational initiation by iron Any process that modulates the frequency, rate or extent of the translation of certain mRNAs involved in iron metabolism; regulated by the concentration of iron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047264 biolink:NamedThing heteroglycan alpha-mannosyltransferase activity Catalysis of the reaction: heteroglycan + GDP-mannose = alpha-D-mannosylheteroglycan + GDP. tmpzr1t_l9r_go_relaxed.owl GDP mannose alpha-mannosyltransferase activity|heteropolysaccharide alpha-mannosyltransferase activity|guanosine diphosphomannose-heteroglycan alpha-mannosyltransferase activity|GDP-mannose:heteroglycan 2-(or 3-)-alpha-D-mannosyltransferase activity EC:2.4.1.48 molecular_function owl:Class GO:2000567 biolink:NamedThing regulation of memory T cell activation Any process that modulates the frequency, rate or extent of memory T cell activation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:10:06Z biological_process owl:Class GO:0002907 biolink:NamedThing positive regulation of mature B cell apoptotic process Any process that activates or increases the frequency, rate, or extent of mature B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up regulation of mature B cell apoptosis|activation of mature B cell apoptosis|positive regulation of mature B cell apoptosis|up-regulation of mature B cell apoptosis|stimulation of mature B cell apoptosis|upregulation of mature B cell apoptosis biological_process owl:Class GO:0010142 biolink:NamedThing farnesyl diphosphate biosynthetic process, mevalonate pathway The pathway that converts acetate, in the form of acetyl-CoA, to farnesyl diphosphate (FPP) through a series of mevalonate intermediates. Farnesyl diphosphate is an important substrate for other essential pathways, such as biosynthesis of sterols. tmpzr1t_l9r_go_relaxed.owl farnesyl diphosphate formation, mevalonate pathway|farnesyl diphosphate synthesis, mevalonate pathway|Ac-MVA pathway|farnesyl diphosphate anabolism, mevalonate pathway|isoprenoid pathway|acetate-mevalonate pathway MetaCyc:PWY-922 biological_process owl:Class GO:0051760 biolink:NamedThing meiotic sister chromatid cohesion, arms The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the chromosome arms during meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic sister chromatid cohesion along arms|sister chromatid cohesion along arms at meiosis I biological_process owl:Class GO:0042897 biolink:NamedThing polymyxin transmembrane transporter activity Enables the transfer of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl polymyxin transporter activity molecular_function owl:Class GO:0002281 biolink:NamedThing macrophage activation involved in immune response A change in morphology and behavior of a macrophage resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl macrophage activation during immune response|macrophage polarization involved in immune response biological_process owl:Class GO:0002275 biolink:NamedThing myeloid cell activation involved in immune response A change in the morphology or behavior of a myeloid cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl myeloid cell activation during immune response biological_process owl:Class GO:0102895 biolink:NamedThing colneleate synthase activity Catalysis of the reaction: 9(S)-HPODE <=> colneleate + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:28174|MetaCyc:RXN-8496|EC:4.2.1.121 molecular_function owl:Class GO:0018112 biolink:NamedThing proline racemase activity Catalysis of the reaction: L-proline = D-proline. tmpzr1t_l9r_go_relaxed.owl EC:5.1.1.4|MetaCyc:PROLINE-RACEMASE-RXN|RHEA:10680|KEGG_REACTION:R01255 molecular_function owl:Class GO:0120099 biolink:NamedThing procentriole replication complex A protein complex that acts as a chaperone or scaffold for centriolar proteins during the maturation of the procentriole. Some of its members may become integrated into the growing centriole. Examples are the CPAP(CENPJ)-STIL complex, CEP192-PLK4 complex or CEP152-PLK4 complex in vertebrates. tmpzr1t_l9r_go_relaxed.owl krc 2017-09-28T21:41:34Z cellular_component owl:Class GO:1990162 biolink:NamedThing histone deacetylase activity (H3-K4 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 4) + H2O = histone H3 L-lysine (position 4) + acetate. This reaction represents the removal of an acetyl group from lysine at position 4 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-06T08:48:44Z molecular_function owl:Class GO:0032604 biolink:NamedThing granulocyte macrophage colony-stimulating factor production The appearance of granulocyte macrophage colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl granulocyte macrophage colony stimulating factor production|GM-CSF production|granulocyte macrophage colony-stimulating factor biosynthetic process GO:0042253 biological_process owl:Class GO:0071121 biolink:NamedThing alpha9-beta1 integrin-VEGF-D complex A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor D. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-FIGF complex mah 2009-11-13T02:21:37Z cellular_component owl:Class GO:1902167 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl upregulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|activation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|up-regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|upregulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|up regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|activation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|up regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator|positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|up-regulation of DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis lb 2013-05-22T12:45:20Z biological_process owl:Class GO:1901760 biolink:NamedThing beta-L-Ara4N-lipid A biosynthetic process The chemical reactions and pathways resulting in the formation of beta-L-Ara4N-lipid A which occurs as a result of modification of the lipid A moiety of lipopolysaccharide by the addition of the sugar 4-amino-4-deoxy-L-arabinose (L-Ara4N). This strategy is adopted by pathogenic Gram-negative bacteria to evade cationic antimicrobial peptides produced by the innate immune system. tmpzr1t_l9r_go_relaxed.owl beta-L-Ara4N-lipid A anabolism|beta-L-Ara4N-lipid A synthesis|4-amino-4-deoxy-beta-L-arabinose-lipid A biosynthetic process|4-amino-4-deoxy-beta-L-arabinose-lipid A biosynthesis|beta-L-Ara4N-lipid A formation|beta-L-Ara4N-lipid A biosynthesis pr 2013-01-14T12:53:01Z biological_process owl:Class GO:0102810 biolink:NamedThing glutarate-semialdehyde dehydrogenase (NADP+) activity Catalysis of the reaction: 5-oxopentanoate + NADP + H2O = glutarate + NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:57832|MetaCyc:RXN-8182 molecular_function owl:Class GO:0140586 biolink:NamedThing promoter-terminator loop anchoring activity Bridging together a cis-regulatory element and a terminator DNA sequences on the chromatin, holding two loop anchors together, maintaining a chromatin loop. tmpzr1t_l9r_go_relaxed.owl terminator-promoter loop anchoring activity https://github.com/geneontology/go-ontology/issues/20204 Note that GO does not separately defines enhancers, since this concept is very close to that of cis-regulatory elements. However the literature refers to 'promoter-enhancer loops' to describe loops that bring together cis-regulatory elements. Note also that while SO defines 'promoter' as the core promoter, here it is used to mean a cis-regulatory element. pg 2021-02-04T14:51:44Z molecular_function owl:Class GO:0070967 biolink:NamedThing coenzyme F420 binding Binding to F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-02T11:33:26Z molecular_function owl:Class GO:0016158 biolink:NamedThing 3-phytase activity Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl myo-inositol-hexakisphosphate 3-phosphohydrolase activity|myo-inositol-hexaphosphate 3-phosphohydrolase activity|phytate 1-phosphatase activity|phytate 3-phosphatase activity|phytase activity|1-phytase activity MetaCyc:RXN0-1001|EC:3.1.3.8|RHEA:16989 molecular_function owl:Class GO:0018167 biolink:NamedThing protein-phycoerythrobilin linkage via phycoerythrobilin-bis-L-cysteine The linkage of the chromophore phycoerythrobilin to phycoerythrin via phycoerythrobilin-bis-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0259 biological_process owl:Class GO:0072215 biolink:NamedThing regulation of metanephros development Any process that modulates the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042117 biolink:NamedThing monocyte activation The change in morphology and behavior of a monocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002274 biolink:NamedThing myeloid leukocyte activation A change in the morphology or behavior of a myeloid leukocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. tmpzr1t_l9r_go_relaxed.owl myeloid leucocyte activation biological_process owl:Class GO:0031982 biolink:NamedThing vesicle Any small, fluid-filled, spherical organelle enclosed by membrane. tmpzr1t_l9r_go_relaxed.owl membrane-enclosed vesicle|membrane-bounded vesicle NIF_Subcellular:sao221389602|Wikipedia:Vesicle_(biology) GO:0031988 cellular_component owl:Class GO:0150146 biolink:NamedThing cell junction disassembly The disaggregation of a cell junction into its constituent components. tmpzr1t_l9r_go_relaxed.owl bc 2019-12-08T11:12:13Z biological_process owl:Class GO:1900749 biolink:NamedThing (R)-carnitine transport The directed movement of a (R)-carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl C7H15NO3 transport|Vitamin BT transport|Carnicor transport|Carnitene transport|(-)-Carnitine transport|(3R)-3-hydroxy-4-(trimethylammonio)butanoate transport|Carnitine transport|Carnitor transport|Levocarnitine transport|(-)-L-Carnitine transport|L-Carnitine transport jl 2012-05-29T02:01:17Z biological_process owl:Class GO:0015879 biolink:NamedThing carnitine transport The directed movement of carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl vitamin Bt transport biological_process owl:Class GO:0022614 biolink:NamedThing membrane to membrane docking The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere. tmpzr1t_l9r_go_relaxed.owl membrane-membrane docking biological_process owl:Class GO:0036135 biolink:NamedThing Schwann cell migration The orderly movement of a Schwann cell from one site to another. A Schwann cell is a glial cell that ensheathes axons of neuron in the peripheral nervous system and is necessary for their maintainance and function. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-06T10:44:39Z biological_process owl:Class GO:0045495 biolink:NamedThing pole plasm Differentiated cytoplasm associated with a pole (animal, vegetal, anterior, or posterior) of an oocyte, egg or early embryo. tmpzr1t_l9r_go_relaxed.owl polar plasm|germ plasm cellular_component owl:Class GO:0036165 biolink:NamedThing invasive growth in response to heat The growth of colonies in filamentous chains of cells as a result of an increase in temperature. tmpzr1t_l9r_go_relaxed.owl invasive growth in response to high temperature|invasive growth in response to elevated temperature|invasive growth in response to temperature stimulus bf 2012-03-27T11:23:03Z biological_process owl:Class GO:0050035 biolink:NamedThing L-sorbose oxidase activity Catalysis of the reaction: L-sorbose + O(2) = 5-dehydro-D-fructose + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl L-sorbose:oxygen 5-oxidoreductase activity MetaCyc:L-SORBOSE-OXIDASE-RXN|RHEA:17853|EC:1.1.3.11|KEGG_REACTION:R01695 molecular_function owl:Class GO:2001112 biolink:NamedThing regulation of cellular response to hepatocyte growth factor stimulus Any process that modulates the frequency, rate or extent of cellular response to hepatocyte growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to HGF stimulus dph 2011-10-05T05:43:18Z biological_process owl:Class GO:0010800 biolink:NamedThing positive regulation of peptidyl-threonine phosphorylation Any process that increases the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903222 biolink:NamedThing quinolinic acid transmembrane transport The process in which quinolinic acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl di 2014-07-26T07:29:07Z biological_process owl:Class GO:0032469 biolink:NamedThing endoplasmic reticulum calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings. tmpzr1t_l9r_go_relaxed.owl regulation of ER calcium ion concentration|regulation of calcium ion concentration in endoplasmic reticulum|calcium ion homeostasis in ER|ER calcium ion homeostasis|calcium ion homeostasis in endoplasmic reticulum|regulation of calcium ion concentration in ER|regulation of endoplasmic reticulum calcium ion concentration|endoplasmic reticulum calcium ion concentration regulation|ER calcium ion concentration regulation biological_process owl:Class GO:0042284 biolink:NamedThing sphingolipid delta-4 desaturase activity Catalysis of the reaction: a dihydroceramide + 2 ferrocytochrome b5 + O2 + 2 H+ -> a sphingosine ceramide (aka (4E)-sphing-4-enine ceramide) + 2 ferricytochrome b5 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl delta-4 sphingolipid desaturase activity https://github.com/geneontology/go-ontology/issues/21105 EC:1.14.19.17|Reactome:R-HSA-428259|RHEA:46544 molecular_function owl:Class GO:0042301 biolink:NamedThing phosphate ion binding Binding to a phosphate ion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043606 biolink:NamedThing formamide metabolic process The chemical reactions and pathways involving formamide, the simplest amide, HCONH2, derived from formic acid. tmpzr1t_l9r_go_relaxed.owl formamide metabolism biological_process owl:Class GO:0047325 biolink:NamedThing inositol tetrakisphosphate 1-kinase activity Catalysis of the reaction: 1D-myo-inositol 3,4,5,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl 1D-myo-inositol-trisphosphate 6-kinase activity|inositol-trisphosphate 6-kinase activity|inositol 3,4,5,6-tetrakisphosphate 1-kinase activity|1D-myo-inositol-trisphosphate 5-kinase activity|inositol-tetrakisphosphate 1-kinase activity|inositol-trisphosphate 5-kinase activity|1D-myo-inositol-tetrakisphosphate 1-kinase activity|ATP:1D-myo-inositol-3,4,5,6-tetrakisphosphate 1-phosphotransferase activity Reactome:R-HSA-994137|RHEA:12452|MetaCyc:2.7.1.134-RXN|EC:2.7.1.134|Reactome:R-HSA-1855162 molecular_function owl:Class GO:0061307 biolink:NamedThing cardiac neural crest cell differentiation involved in heart development The process in which a relatively unspecialized cell acquires specialized features of a cardiac neural crest cell that will migrate to the heart and contribute to its development. Cardiac neural crest cells are specialized cells that migrate toward the heart from the third, fourth and sixth pharyngeal arches. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-23T08:50:56Z biological_process owl:Class GO:0015298 biolink:NamedThing solute:cation antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + cation(in) = solute(in) + cation(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030776 biolink:NamedThing (RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline = S-adenosyl-L-homocysteine + N-methyl-(RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline. tmpzr1t_l9r_go_relaxed.owl (RS)-tetrahydrobenzylisoquinoline N-methyltransferase activity|S-adenosyl-L-methionine:(RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline N-methyltransferase activity|norreticuline N-methyltransferase activity MetaCyc:2.1.1.115-RXN|RHEA:13005|EC:2.1.1.115 molecular_function owl:Class GO:0030787 biolink:NamedThing inositol 4-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + myo-inositol = 1D-4-O-methyl-myo-inositol + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:myo-inositol 4-O-methyltransferase activity|S-adenosyl-L-methionine:1D-myo-inositol 4-methyltransferase activity|myo-inositol 4-O-methyltransferase activity|myo-inositol 6-O-methyltransferase activity KEGG_REACTION:R01190|RHEA:23248|MetaCyc:2.1.1.129-RXN|EC:2.1.1.129 molecular_function owl:Class GO:0000776 biolink:NamedThing kinetochore A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. tmpzr1t_l9r_go_relaxed.owl condensed nuclear chromosome kinetochore|condensed chromosome kinetochore https://github.com/geneontology/go-ontology/issues/21126 Wikipedia:Kinetochore Note that the kinetochore overlaps the centromeric DNA, but centromeric DNA is not part of the kinetochore. GO:0000777|GO:0005699|GO:0000778 cellular_component owl:Class GO:0003070 biolink:NamedThing regulation of systemic arterial blood pressure by neurotransmitter The regulation of blood pressure mediated by a neurotransmitter. A neurotransmitter is any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150144 biolink:NamedThing negative regulation of CD80 production Any process that stops, prevents or reduces the frequency, rate or extent of CD80 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of CD80 biosynthetic process bc 2019-12-08T10:26:42Z biological_process owl:Class GO:0003087 biolink:NamedThing positive regulation of the force of heart contraction by neuronal epinephrine The process in which the release of epinephrine from nerve endings modulates the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl increased force of heart contraction by neuronal adrenaline|increased force of heart contraction by epinephrine released from the nerve endings|positive regulation of heart contraction by adrenaline|increased force of heart contraction by neuronal epinephrine|positive regulation of heart contraction by neuronal epinephrine biological_process owl:Class GO:1904315 biolink:NamedThing transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential Any transmitter-gated ion channel activity that is involved in regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ionotropic neurotransmitter receptor activity involved in regulation of post-synaptic membrane potential|ionotropic neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential dos 2015-06-10T18:02:07Z molecular_function owl:Class GO:0009145 biolink:NamedThing purine nucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside triphosphate biosynthesis|purine nucleoside triphosphate formation|purine nucleoside triphosphate synthesis|purine nucleoside triphosphate anabolism biological_process owl:Class GO:0097515 biolink:NamedThing asexual spore wall A specialized envelope lying outside the cell membrane of a spore derived from an asexual process. Examples of this process are found in bacterial and fungal species. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:11:21Z cellular_component owl:Class GO:0061119 biolink:NamedThing regulation of positive chemotaxis to cAMP by chlorinated alkylphenone Any process that modulates the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of a chlorinated alkylphenone. An alkylphenone is an aromatic polyketide with methyl and chlorine substitutions. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T07:53:58Z biological_process owl:Class GO:0002091 biolink:NamedThing negative regulation of receptor internalization Any process that stops, prevents, or reduces the frequency, rate or extent of receptor internalization. tmpzr1t_l9r_go_relaxed.owl inhibition of receptor internalization|down regulation of receptor internalization|downregulation of receptor internalization|down-regulation of receptor internalization biological_process owl:Class GO:0034574 biolink:NamedThing didemethylisoproturon dehydrogenase activity Catalysis of the reaction: didemethylisoproturon + H2O = 4'-(2-hydroxyisopropyl)phenylurea + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.17.99.-|UM-BBD_reactionID:r0899 molecular_function owl:Class GO:0036310 biolink:NamedThing ATP-dependent DNA/DNA annealing activity An ATP-dependent activity that facilitates the formation of a complementary double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl ATP-dependent DNA annealing activity|DNA rewinding activity|annealing helicase activity|nucleoside-triphosphatase activity involved in DNA annealing https://github.com/geneontology/go-ontology/issues/12465|https://github.com/geneontology/go-ontology/issues/9815|https://github.com/geneontology/go-ontology/issues/19669 Reactome:R-HSA-5686642 bf 2012-08-14T15:24:29Z molecular_function owl:Class GO:0034158 biolink:NamedThing toll-like receptor 8 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 8. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 8 signalling pathway|TLR8 signaling pathway biological_process owl:Class GO:0102448 biolink:NamedThing rhamnetin 4'-O-methyltransferase activity Catalysis of the reaction: rhamnetin + S-adenosyl-L-methionine <=> ombuin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13934 molecular_function owl:Class GO:0010379 biolink:NamedThing phaseic acid biosynthetic process The chemical reactions and pathways resulting in the formation of phaseic acid (PA), a catabolite of the plant hormone abscisic acid (ABA). tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5271 biological_process owl:Class GO:0021676 biolink:NamedThing rhombomere 8 structural organization The process that contributes to creating the structural organization of rhombomere 8. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 8 structural organisation biological_process owl:Class GO:1990638 biolink:NamedThing response to granulocyte colony-stimulating factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte colony-stimulating factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to G-CSF sl 2015-02-11T00:02:33Z biological_process owl:Class GO:0008993 biolink:NamedThing rhamnulokinase activity Catalysis of the reaction: ATP + L-rhamnulose = ADP + L-rhamnulose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl L-rhamnulokinase activity|ATP:L-rhamnulose 1-phosphotransferase activity|rhamnulose kinase activity|L-rhamnulose kinase activity|rhamnulokinase (phosphorylating)|RhuK MetaCyc:RHAMNULOKIN-RXN|EC:2.7.1.5|RHEA:20117 molecular_function owl:Class GO:0071947 biolink:NamedThing protein deubiquitination involved in ubiquitin-dependent protein catabolic process The removal of one or more ubiquitin groups from a protein as part of a process of ubiquitin-dependent protein catabolism. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-06T02:06:10Z biological_process owl:Class GO:0042617 biolink:NamedThing paclitaxel biosynthetic process The chemical reactions and pathways resulting in the formation of paclitaxel, a tetracyclic diterpenoid isolated originally from the bark of the Pacific yew tree, Taxus brevifolia. tmpzr1t_l9r_go_relaxed.owl paclitaxel formation|taxol biosynthesis|paclitaxel biosynthesis|taxol biosynthetic process|paclitaxel synthesis|paclitaxel anabolism biological_process owl:Class GO:0002633 biolink:NamedThing positive regulation of granuloma formation Any process that activates or increases the frequency, rate, or extent of granuloma formation. tmpzr1t_l9r_go_relaxed.owl stimulation of granuloma formation|up regulation of granuloma formation|up-regulation of granuloma formation|upregulation of granuloma formation|activation of granuloma formation biological_process owl:Class GO:0014884 biolink:NamedThing detection of muscle inactivity involved in regulation of muscle adaptation The series of events in which a muscle inactivity stimulus is received by a cell and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060869 biolink:NamedThing transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, which contributes to the process of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein serine/threonine kinase signalling pathway involved in floral organ abscission dph 2009-08-12T07:02:07Z biological_process owl:Class GO:1905649 biolink:NamedThing negative regulation of shell calcification Any process that stops, prevents or reduces the frequency, rate or extent of shell calcification. tmpzr1t_l9r_go_relaxed.owl down-regulation of shell calcification|downregulation of shell calcification|down regulation of shell calcification|inhibition of shell calcification pga 2016-11-08T16:24:43Z biological_process owl:Class GO:0002795 biolink:NamedThing negative regulation of antimicrobial peptide secretion Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide secretion. tmpzr1t_l9r_go_relaxed.owl down regulation of antimicrobial peptide secretion|inhibition of antimicrobial peptide secretion|down-regulation of antimicrobial peptide secretion|downregulation of antimicrobial peptide secretion biological_process owl:Class GO:0070065 biolink:NamedThing cellubrevin-VAMP4-syntaxin-16 complex A SNARE complex that contains cellubrevin (VAMP3), VAMP4, and syntaxin 16 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Vamp3-Vamp4-Stx16 complex|SNARE complex (Vamp3, Vamp4, Stx16) cellular_component owl:Class GO:1904250 biolink:NamedThing positive regulation of age-related resistance Any process that activates or increases the extent of age-related resistance. tmpzr1t_l9r_go_relaxed.owl up-regulation of ARR|upregulation of ARR|upregulation of senescence-induced resistance|upregulation of flowering-induced resistance|upregulation of adult seedling resistance|positive regulation of senescence-induced resistance|up regulation of adult seedling resistance|up-regulation of adult seedling resistance|activation of flowering-induced resistance|up regulation of mature seedling resistance|up regulation of ARR|positive regulation of adult seedling resistance|positive regulation of flowering-induced resistance|activation of adult seedling resistance|up regulation of age-related resistance|positive regulation of ARR|up regulation of flowering-induced resistance|positive regulation of mature seedling resistance|up regulation of senescence-induced resistance|upregulation of mature seedling resistance|activation of age-related resistance|activation of ARR|activation of senescence-induced resistance|up-regulation of age-related resistance|upregulation of age-related resistance|up-regulation of flowering-induced resistance|up-regulation of senescence-induced resistance|activation of mature seedling resistance|up-regulation of mature seedling resistance tb 2015-05-19T20:20:11Z biological_process owl:Class GO:1904248 biolink:NamedThing regulation of age-related resistance Any process that modulates the extent of age-related resistance. tmpzr1t_l9r_go_relaxed.owl regulation of ARR|regulation of developmental resistance|regulation of mature seedling resistance|regulation of ontogenic resistance|regulation of adult seedling resistance|regulation of senescence-induced resistance|regulation of flowering-induced resistance tb 2015-05-19T20:19:58Z biological_process owl:Class GO:0050037 biolink:NamedThing L-xylose 1-dehydrogenase activity Catalysis of the reaction: aldehydo-L-xylose + NADP(+) = L-xylono-1,4-lactone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-xylose:NADP+ 1-oxidoreductase activity|NADPH-xylose reductase activity|L-xylose dehydrogenase activity MetaCyc:L-XYLOSE-1-DEHYDROGENASE-RXN|EC:1.1.1.113|RHEA:15789|KEGG_REACTION:R03586 molecular_function owl:Class GO:1900206 biolink:NamedThing regulation of pronephric nephron tubule development Any process that modulates the frequency, rate or extent of pronephric nephron tubule development. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-22T09:23:13Z biological_process owl:Class GO:0000127 biolink:NamedThing transcription factor TFIIIC complex A heterotrimeric transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species. It also functions as a boundary element to partition genome content into distinct domains outside Pol III promoter regions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007455 biolink:NamedThing eye-antennal disc morphogenesis The process in which the anatomical structures derived from the eye-antennal disc are generated and organized. This includes the transformation of an eye-antennal imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the eye, antenna, head capsule and maxillary palps. tmpzr1t_l9r_go_relaxed.owl eye-antennal disc metamorphosis biological_process owl:Class GO:0018109 biolink:NamedThing peptidyl-arginine phosphorylation The phosphorylation of peptidyl-arginine to form omega-N-phospho-L-arginine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0222 biological_process owl:Class GO:0030576 biolink:NamedThing Cajal body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of Cajal bodies, nuclear bodies that appear ultrastructurally as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter and are enriched in ribonucleoproteins, and certain general RNA polymerase II transcription factors. tmpzr1t_l9r_go_relaxed.owl Cajal body organisation|Cajal body organization and biogenesis See also the cellular component term 'Cajal body ; GO:0015030'. biological_process owl:Class GO:0047608 biolink:NamedThing acetylindoxyl oxidase activity Catalysis of the reaction: N-acetylindoxyl + O2 = N-acetylisatin + unknown. tmpzr1t_l9r_go_relaxed.owl N-acetylindoxyl:oxygen oxidoreductase activity EC:1.7.3.2|MetaCyc:ACETYLINDOXYL-OXIDASE-RXN|RHEA:16941 molecular_function owl:Class GO:0032177 biolink:NamedThing cellular bud neck split septin rings Two separate septin rings that are formed from the septin collar at the time of cytokinesis in cells that divide by budding. These two rings are thought to delineate a special compartment in which factors involved in cytokinesis are concentrated. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032176 biolink:NamedThing split septin rings A pair of rings that flank the site of cell division, formed by splitting of the septin ring (or collar) prior to cytokinesis; this double ring structure is thought to trap proteins needed for cytokinesis or the formation of the new membrane or cell wall between the two septin rings. Split septin rings are known to occur in budding yeast cells and probably occur in other cell types as well. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903404 biolink:NamedThing positive regulation of renal phosphate excretion Any process that activates or increases the frequency, rate or extent of renal phosphate excretion. tmpzr1t_l9r_go_relaxed.owl upregulation of renal phosphate excretion|activation of renal phosphate excretion|up regulation of renal phosphate excretion|up-regulation of renal phosphate ion excretion|activation of renal phosphate ion excretion|positive regulation of renal phosphate ion excretion|upregulation of renal phosphate ion excretion|up-regulation of renal phosphate excretion|up regulation of renal phosphate ion excretion pm 2014-09-01T13:47:18Z biological_process owl:Class GO:1903402 biolink:NamedThing regulation of renal phosphate excretion Any process that modulates the frequency, rate or extent of renal phosphate excretion. tmpzr1t_l9r_go_relaxed.owl regulation of renal phosphate ion excretion pm 2014-09-01T13:47:01Z biological_process owl:Class GO:0005991 biolink:NamedThing trehalose metabolic process The chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. tmpzr1t_l9r_go_relaxed.owl mycose metabolic process|mykose metabolic process|mycose metabolism|trehalose metabolism|mykose metabolism biological_process owl:Class GO:0002453 biolink:NamedThing peripheral B cell anergy Any process contributing to anergy, a state of functional inactivation that occurs as part of tolerance induction, in peripheral B cells. tmpzr1t_l9r_go_relaxed.owl peripheral B-cell anergy|peripheral B lymphocyte anergy|peripheral B-lymphocyte anergy biological_process owl:Class GO:1900004 biolink:NamedThing negative regulation of serine-type endopeptidase activity Any process that stops, prevents or reduces the frequency, rate or extent of serine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of blood coagulation factor activity|down regulation of serine-type endopeptidase activity|down regulation of blood coagulation factor activity kmv 2012-01-09T10:03:20Z biological_process owl:Class GO:0060227 biolink:NamedThing Notch signaling pathway involved in camera-type eye photoreceptor fate commitment The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to the commitment of a precursor cell to a eye photoreceptor fate. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway involved in camera-type eye photoreceptor fate commitment biological_process owl:Class GO:0070017 biolink:NamedThing alphav-beta3 integrin-thrombospondin complex A protein complex that consists of an alphav-beta3 integrin complex bound to thrombospondin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-THBS1 complex cellular_component owl:Class GO:1903426 biolink:NamedThing regulation of reactive oxygen species biosynthetic process Any process that modulates the frequency, rate or extent of reactive oxygen species biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ROS formation|regulation of reactive oxygen species biosynthesis|regulation of ROS generation|regulation of reactive oxygen species generation|regulation of reactive oxygen species formation|regulation of reactive oxygen species synthesis|regulation of reactive oxygen species anabolism bf 2014-09-11T10:01:47Z biological_process owl:Class GO:0042404 biolink:NamedThing thyroid hormone catabolic process The chemical reactions and pathways resulting in the breakdown of any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine. tmpzr1t_l9r_go_relaxed.owl thyroid hormone degradation|thyroid hormone breakdown|thyroid hormone catabolism biological_process owl:Class GO:0018274 biolink:NamedThing peptide cross-linking via L-lysinoalanine The modification of peptidyl-lysine and peptidyl-serine to form a (2Xi,9S)-L-lysinoalanine cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0123 biological_process owl:Class GO:0004711 biolink:NamedThing ribosomal protein S6 kinase activity Catalysis of the reaction: ribosomal protein S6 + ATP = ribosomal protein S6 phosphate + ATP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042195 biolink:NamedThing aerobic gallate catabolic process The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic gallate breakdown|aerobic gallic acid catabolic process|aerobic gallic acid catabolism|aerobic gallate catabolism|aerobic gallate degradation biological_process owl:Class GO:0019396 biolink:NamedThing gallate catabolic process The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid (3,4,5-trihydroxybenzoic acid). tmpzr1t_l9r_go_relaxed.owl gallic acid metabolic process|gallic acid catabolism|gallic acid metabolism|gallate metabolism|gallate catabolism|gallate metabolic process|gallic acid catabolic process|gallate breakdown|gallate degradation https://github.com/geneontology/go-ontology/issues/20974 UM-BBD_pathwayID:gal GO:0018918 biological_process owl:Class GO:0052688 biolink:NamedThing (3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (AMP-forming) activity Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + AMP + diphosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity KEGG_REACTION:R06515 molecular_function owl:Class GO:0070833 biolink:NamedThing phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via CDP-N-methylethanolamine The phosphatidylcholine biosynthetic process that begins with an initial N-methylation with phospho-base phosphoethanolamine, followed by two downstream N-methylations on phosphatidyl-bases, phosphatidyl-N-methylethanolamine and phosphatidyl-N-dimethylethanolamine. The process ends with the conversion of a phosphatidyl-N-dimethylethanolamine to a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY4FS-3 mah 2009-07-29T03:51:39Z biological_process owl:Class GO:0007379 biolink:NamedThing segment specification The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042243 biolink:NamedThing asexual spore wall assembly The aggregation, arrangement and bonding together of a set of components to form an asexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from an asexual process. Examples of this process are found in Bacterial and Fungal species. tmpzr1t_l9r_go_relaxed.owl asexual spore wall formation biological_process owl:Class GO:0042244 biolink:NamedThing spore wall assembly The aggregation, arrangement and bonding together of a set of components to form a spore wall; a spore wall is the specialized envelope lying outside the cell membrane of a spore. tmpzr1t_l9r_go_relaxed.owl spore wall formation|spore coat biosynthetic process|spore coat biosynthesis biological_process owl:Class GO:0061284 biolink:NamedThing specification of mesonephric proximal tubule identity The process in which the proximal tubule of the mesonephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:44:24Z biological_process owl:Class GO:0002580 biolink:NamedThing regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Any process that modulates the frequency, rate, or extent of antigen processing and presentation of antigen (peptide or polysaccharide) via MHC class II. tmpzr1t_l9r_go_relaxed.owl regulation of peptide or polysaccharide antigen processing and presentation via MHC class II biological_process owl:Class GO:1902035 biolink:NamedThing positive regulation of hematopoietic stem cell proliferation Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of hematopoietic stem cell proliferation|upregulation of hemopoietic stem cell proliferation|activation of hematopoietic stem cell proliferation|up-regulation of hematopoietic stem cell proliferation|positive regulation of hemopoietic stem cell proliferation|upregulation of hematopoietic stem cell proliferation|up regulation of hemopoietic stem cell proliferation|up-regulation of hemopoietic stem cell proliferation|activation of hemopoietic stem cell proliferation ss 2013-04-02T05:13:31Z biological_process owl:Class GO:1902875 biolink:NamedThing regulation of embryonic pattern specification Any process that modulates the frequency, rate or extent of embryonic pattern specification. tmpzr1t_l9r_go_relaxed.owl regulation of embryonic pattern formation|regulation of ventral/lateral system|regulation of embryonic pattern biosynthesis mr 2014-04-03T15:25:15Z biological_process owl:Class GO:0046603 biolink:NamedThing negative regulation of mitotic centrosome separation Any process that stops, prevents, or reduces the frequency, rate or extent of centrosome separation. tmpzr1t_l9r_go_relaxed.owl inhibition of mitotic centrosome separation|down-regulation of mitotic centrosome separation|down regulation of mitotic centrosome separation|downregulation of mitotic centrosome separation biological_process owl:Class GO:0002156 biolink:NamedThing negative regulation of thyroid hormone mediated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of thyroid hormone mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of thyroid hormone mediated signalling pathway hjd 2009-11-19T12:41:48Z biological_process owl:Class GO:0000766 biolink:NamedThing negative adaptation of signaling pathway by response to pheromone involved in pheromone-induced unidirectional conjugation In organisms that undergo pheromone-induced unidirectional conjugation, the process involved in desensitization following exposure to pheromone stimulus that acts to down-regulate further stimulation or block initial conjugation responses. tmpzr1t_l9r_go_relaxed.owl adaptation to pheromone during pheromone-induced unidirectional conjugation|negative adaptation of signalling pathway by response to pheromone involved in pheromone-induced unidirectional conjugation|desensitization to pheromone during pheromone-induced unidirectional conjugation biological_process owl:Class GO:0032756 biolink:NamedThing positive regulation of interleukin-7 production Any process that activates or increases the frequency, rate, or extent of interleukin-7 production. tmpzr1t_l9r_go_relaxed.owl activation of interleukin-7 production|up-regulation of interleukin-7 production|upregulation of interleukin-7 production|positive regulation of IL-7 production|up regulation of interleukin-7 production|stimulation of interleukin-7 production|positive regulation of interleukin-7 secretion|positive regulation of interleukin-7 biosynthetic process GO:0150114|GO:0045413 biological_process owl:Class GO:0044828 biolink:NamedThing negative regulation by host of viral genome replication A process in which a host organism stops, prevents or reduces the frequency, rate or extent of viral genome replication. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-06T11:34:23Z biological_process owl:Class GO:0061507 biolink:NamedThing 2',3'-cyclic GMP-AMP binding Binding to 2',3' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 2',5' and 3',5' linkages. tmpzr1t_l9r_go_relaxed.owl c[G(2',5')pA(3',5')p] binding|2',3'-cyclic GAMP binding|2',5-3',5'-cyclic GMP-AMP binding|2',3'-cGAMP binding|2',3' cyclic GAMP binding|cyclic-GMP-AMP binding|2',3' cGAMP binding https://github.com/geneontology/go-ontology/issues/21980 dph 2013-01-24T15:38:27Z GO:0098546 molecular_function owl:Class GO:1905875 biolink:NamedThing negative regulation of postsynaptic density organization Any process that stops, prevents or reduces the frequency, rate or extent of postsynaptic density organization. tmpzr1t_l9r_go_relaxed.owl downregulation of postsynaptic density organization|downregulation of postsynaptic density organisation|down-regulation of postsynaptic density organization|negative regulation of postsynaptic density organisation|inhibition of post synaptic density organization|inhibition of PSD organization|down regulation of post synaptic density organization|down-regulation of post synaptic density organization|down-regulation of post-synaptic density organization|inhibition of postsynaptic density organization|downregulation of post-synaptic density organization|down regulation of postsynaptic density organisation|downregulation of post synaptic density organization|inhibition of postsynaptic density organisation|down regulation of post-synaptic density organization|negative regulation of post-synaptic density organization|downregulation of PSD organization|inhibition of post-synaptic density organization|negative regulation of PSD organization|down regulation of postsynaptic density organization|down-regulation of postsynaptic density organisation|down-regulation of PSD organization|negative regulation of post synaptic density organization|down regulation of PSD organization sl 2017-01-27T19:53:41Z biological_process owl:Class GO:0042841 biolink:NamedThing D-glucuronate biosynthetic process The chemical reactions and pathways resulting in the formation of D-glucuronate, the D-enantiomer of glucuronate. tmpzr1t_l9r_go_relaxed.owl D-glucuronate formation|D-glucuronate anabolism|D-glucuronate synthesis|D-glucuronate biosynthesis biological_process owl:Class GO:0046399 biolink:NamedThing glucuronate biosynthetic process The chemical reactions and pathways resulting in the formation of glucuronate, the anion of glucuronic acid. tmpzr1t_l9r_go_relaxed.owl glucuronate anabolism|glucuronate formation|glucuronate biosynthesis|glucuronate synthesis biological_process owl:Class GO:0110068 biolink:NamedThing glucosylglycerate phosphorylase activity Catalysis of the reaction: glucosylglycerate + phosphate = glucose-1-phosphate + D-glycerate. tmpzr1t_l9r_go_relaxed.owl kmv 2017-11-21T21:50:10Z molecular_function owl:Class GO:0036518 biolink:NamedThing chemorepulsion of dopaminergic neuron axon The process in which a dopaminergic neuron growth cone is directed to a specific target site in response to a repulsive chemical cue. tmpzr1t_l9r_go_relaxed.owl chemorepulsion of DA axon|chemorepulsion of dopaminergic axon bf 2015-12-17T11:29:09Z biological_process owl:Class GO:0090635 biolink:NamedThing extracellular core region of desmosome The desmosomal part containing the desmosomal cadherins, desmogleins and desmocollins, that establish contact and adhere to neighboring cells in a Ca2+-dependent manner. tmpzr1t_l9r_go_relaxed.owl desmoglea tb 2015-04-20T16:10:51Z cellular_component owl:Class GO:1900192 biolink:NamedThing positive regulation of single-species biofilm formation Any process that activates or increases the frequency, rate or extent of single-species biofilm formation. tmpzr1t_l9r_go_relaxed.owl upregulation of single-species biofilm formation|activation of single-species biofilm formation|up regulation of single-species biofilm formation|up-regulation of single-species biofilm formation di 2012-03-19T12:42:21Z biological_process owl:Class GO:0007187 biolink:NamedThing G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds with activation or inhibition of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide. tmpzr1t_l9r_go_relaxed.owl GPCR signaling pathway via cyclic nucleotide second messenger|G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger|G protein signalling, coupled to cyclic nucleotide second messenger|G protein signaling, coupled to cyclic nucleotide second messenger|G-protein signalling, coupled to cyclic nucleotide second messenger|G-protein signaling, coupled to cyclic nucleotide second messenger biological_process owl:Class GO:0052582 biolink:NamedThing (+)-menthofuran synthase activity Catalysis of the reaction: (R)-pulegone + H(+) + NADPH + O(2) = (R)-menthofuran + 2 H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl (+)-pulegone 9-hydroxylase activity|(+)-pulegone,NADPH:oxygen oxidoreductase (9-hydroxylating) activity|menthofuran synthase activity|cytochrome P450 menthofuran synthase activity|(+)-MFS activity KEGG_REACTION:R08923|RHEA:25658|EC:1.14.14.143|MetaCyc:1.14.13.104-RXN ai 2010-08-09T04:47:42Z molecular_function owl:Class GO:0018750 biolink:NamedThing biuret amidohydrolase activity Catalysis of the reaction: biuret + H2O = urea + CO2 + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.84|RHEA:17525|UM-BBD_reactionID:r0846 molecular_function owl:Class GO:0034918 biolink:NamedThing 3-hydroxy-2-methylhexanoyl-CoA dehydrogenase activity Catalysis of the reaction: 3-hydroxy-2-methylhexanoyl-CoA = 2-methyl-3-oxohexanoyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0930 molecular_function owl:Class GO:0033544 biolink:NamedThing fatty acid beta-oxidation, unsaturated, even number, epimerase pathway A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. In this pathway, the intermediate 2,4-dienoyl-CoA is converted to cis-2-enoyl-CoA through one more cycle of the core beta-oxidation pathway. Cis-2-enoyl-CoA cannot be completely degraded via the core beta-oxidation pathway because hydratation of cis-2-enoyl-CoA yields D-3-hydroxyacyl-CoA, which is not a substrate for 3-hydroxylacyl-CoA dehydrogenase. Cis-2-enoyl-CoA must enter the so-called epimerase pathway, which involves converting D-3-hydroxyacyl-CoA to L-3-hydroxyacyl-CoA by 3-hydroxylacyl-CoA epimerase or by two stereo-specific enoyl-CoA hydratases. L-3-hydroxyacyl-CoA then returns to the core beta-oxidation pathway. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031757 biolink:NamedThing Edg-4 lysophosphatidic acid receptor binding Binding to an Edg-4 lysophosphatidic acid receptor. tmpzr1t_l9r_go_relaxed.owl LPA2 receptor binding|Edg-4 lysophosphatidic acid receptor ligand molecular_function owl:Class GO:0090426 biolink:NamedThing actin filament bundle convergence A process of actin filament bundle distribution that results in the compaction of actin filaments. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-04T09:33:09Z biological_process owl:Class GO:0045853 biolink:NamedThing negative regulation of bicoid mRNA localization Any process that stops, prevents, or reduces the frequency, rate or extent of the process in which bicoid mRNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl down regulation of bicoid mRNA localization|downregulation of bicoid mRNA localization|inhibition of bicoid mRNA localization|negative regulation of bicoid mRNA localisation|down-regulation of bicoid mRNA localization biological_process owl:Class GO:1900521 biolink:NamedThing regulation of response to amylopectin Any process that modulates the frequency, rate or extent of response to amylopectin. tmpzr1t_l9r_go_relaxed.owl tt 2012-05-02T04:13:51Z biological_process owl:Class GO:0070590 biolink:NamedThing spore wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a spore wall. A spore wall is the specialized cell wall lying outside the cell membrane of a spore. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-28T01:06:10Z biological_process owl:Class GO:1990892 biolink:NamedThing mitotic chromosome arm condensation The cell cycle process in which chromosome arm chromatin structure is compacted prior to and during mitosis in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl vw 2015-11-03T14:16:59Z biological_process owl:Class GO:0044635 biolink:NamedThing positive regulation of complement activation, alternative pathway in other organism Any process that activates or increases the frequency, rate or extent of complement activation by the alternative pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:36:11Z biological_process owl:Class GO:0032962 biolink:NamedThing positive regulation of inositol trisphosphate biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate. tmpzr1t_l9r_go_relaxed.owl positive regulation of inositol trisphosphate formation|positive regulation of myo-inositol trisphosphate biosynthetic process|positive regulation of inositol trisphosphate synthesis|positive regulation of inositol trisphosphate biosynthesis|positive regulation of IP3 biosynthesis|positive regulation of myo-inositol trisphosphate biosynthesis|positive regulation of inositol trisphosphate anabolism|positive regulation of IP3 biosynthetic process biological_process owl:Class GO:0061663 biolink:NamedThing NEDD8 ligase activity Catalysis of the transfer of NEDD8 to a substrate protein via the reaction X-NEDD8 + S --> X + S-NEDD8, where X is either an E2 or E3 enzyme, the X-NEDD8 linkage is a thioester bond, and the S-NEDD8 linkage is an isopeptide bond between the C-terminal amino acid of NEDD8 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T13:57:00Z molecular_function owl:Class GO:0002107 biolink:NamedThing generation of mature 3'-end of 5S rRNA generated by RNA polymerase III The removal of extra uridine residues from the 3' end of a 5S pre-rRNA generated by transcription by RNA polymerase III to generate the mature 3'-end. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046182 biolink:NamedThing L-idonate biosynthetic process The chemical reactions and pathways resulting in the formation of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate synthesis|L-idonate anabolism|L-idonate formation|L-idonate biosynthesis biological_process owl:Class GO:0019523 biolink:NamedThing L-idonate metabolic process The chemical reactions and pathways involving L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate metabolism MetaCyc:IDNCAT-PWY biological_process owl:Class GO:2000101 biolink:NamedThing regulation of mammary stem cell proliferation Any process that modulates the frequency, rate or extent of mammary stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T06:10:32Z biological_process owl:Class GO:0038153 biolink:NamedThing CCL2-activated CCR4 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL2 to a C-C chemokine type 4 receptor (CCR4) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL2/CCR4 signaling pathway bf 2012-05-11T11:44:48Z biological_process owl:Class GO:1901445 biolink:NamedThing regulation of response to propan-1-ol Any process that modulates the frequency, rate or extent of response to propan-1-ol. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:12:46Z biological_process owl:Class GO:0009625 biolink:NamedThing response to insect Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect. tmpzr1t_l9r_go_relaxed.owl response to insects GO:0043019 biological_process owl:Class GO:0060622 biolink:NamedThing regulation of ascospore wall beta-glucan biosynthetic process Any process that modulates the rate, frequency or extent of ascospore wall beta-glucan biosynthetic process, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T02:01:26Z biological_process owl:Class GO:0061885 biolink:NamedThing positive regulation of mini excitatory postsynaptic potential Any process that increases the frequency, rate or extent of mini excitatory postsynaptic potential. Mini excitatory postsynaptic potential is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-30T15:46:16Z biological_process owl:Class GO:0071614 biolink:NamedThing linoleic acid epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts linoleic acid to a cis-epoxyoctadecenoic acid. tmpzr1t_l9r_go_relaxed.owl linoleic acid monooxygenase activity mah 2010-02-05T06:05:22Z molecular_function owl:Class GO:0046838 biolink:NamedThing phosphorylated carbohydrate dephosphorylation The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate group attached to it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050564 biolink:NamedThing N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase activity Catalysis of the reaction: L-2-aminoadipate + L-cysteine + L-valine + 3 ATP + H(2)O = N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + 3 AMP + 3 diphosphate + 6 H(+). tmpzr1t_l9r_go_relaxed.owl ACV synthetase activity|L-delta-(alpha-aminoadipoyl)-L-cysteinyl-D-valine synthetase activity|L-2-aminohexanedioate:L-cysteine:L-valine ligase (AMP-forming, valine-inverting)|L-alpha-aminoadipyl-cysteinyl-valine synthetase activity EC:6.3.2.26|KEGG_REACTION:R04870|RHEA:23196|MetaCyc:6.3.2.26-RXN molecular_function owl:Class GO:1904052 biolink:NamedThing negative regulation of protein targeting to vacuole involved in autophagy Any process that stops, prevents or reduces the frequency, rate or extent of protein targeting to vacuole involved in autophagy. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein targeting to vacuole involved in autophagy|downregulation of protein targeting to vacuole involved in autophagy|down regulation of protein targeting to vacuole involved in autophagy|inhibition of protein targeting to vacuole involved in autophagy An example of this is SMURF1 in human (UniProt symbol Q9HCE7) in PMID:22020285 (inferred from mutant phenotype). pad 2015-03-17T13:54:22Z biological_process owl:Class GO:0006936 biolink:NamedThing muscle contraction A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Muscle_contraction biological_process owl:Class GO:0042767 biolink:NamedThing ecdysteroid 22-hydroxylase activity Catalysis of the hydroxylation of an ecdysteroid at carbon position 22. tmpzr1t_l9r_go_relaxed.owl Note that in the ecdysteroidogenic pathway, this activity catalyzes the conversion of 2,22-dideoxyecdysone (ketotriol) to 2-deoxyecdysone. molecular_function owl:Class GO:0047890 biolink:NamedThing flavanone 4-reductase activity Catalysis of the reaction: (2S)-flavan-4-ol + NADP+ = (2S)-flavanone + NADPH. tmpzr1t_l9r_go_relaxed.owl (2S)-flavan-4-ol:NADP+ 4-oxidoreductase activity|flavonone 4-reductase activity MetaCyc:FLAVANONE-4-REDUCTASE-RXN|RHEA:11228|EC:1.1.1.234 molecular_function owl:Class GO:0045336 biolink:NamedThing clathrin-coated phagocytic vesicle A clathrin-coated, membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis. tmpzr1t_l9r_go_relaxed.owl clathrin-coated phagosome cellular_component owl:Class GO:0045334 biolink:NamedThing clathrin-coated endocytic vesicle A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1243595998 cellular_component owl:Class GO:0045513 biolink:NamedThing interleukin-27 binding Binding to interleukin-27. tmpzr1t_l9r_go_relaxed.owl IL-27 binding molecular_function owl:Class GO:1990232 biolink:NamedThing phosphomannomutase complex A protein complex capable of phosphomannomutase activity. tmpzr1t_l9r_go_relaxed.owl PMM-2 complex|PMM-1 dimer|PMM-1 complex|PMM-2 dimer bhm 2013-11-12T13:05:54Z cellular_component owl:Class GO:1990233 biolink:NamedThing intramolecular phosphotransferase complex A protein complex capable of catalyzing the transfer of a phosphate group from one position to another within a single molecule. tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-12T13:10:12Z cellular_component owl:Class GO:0036449 biolink:NamedThing microtubule minus-end The end of a microtubule that does not preferentially grow (polymerize). tmpzr1t_l9r_go_relaxed.owl microtubule minus end bf 2013-10-31T13:26:51Z cellular_component owl:Class GO:0098026 biolink:NamedThing virus tail, tube The internal tube of the contractile tails of some viruses. The virus tail tube is the channel for DNA ejection into the host cytoplasm. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail tube Applies in particular the Myoviridae bacteriophages. bm 2012-07-19T14:21:28Z cellular_component owl:Class GO:0019337 biolink:NamedThing tetrachloroethylene catabolic process The chemical reactions and pathways resulting in the breakdown of tetrachloroethylene, a derivative of ethene with the hydrogen atoms replaced by chlorines. tmpzr1t_l9r_go_relaxed.owl tetrachloroethylene degradation|tetrachloroethylene breakdown|tetrachloroethene catabolism|tetrachloroethene catabolic process|tetrachloroethylene catabolism MetaCyc:PCEDEG-PWY biological_process owl:Class GO:0042205 biolink:NamedThing chlorinated hydrocarbon catabolic process The chemical reactions and pathways resulting in the breakdown of chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms. tmpzr1t_l9r_go_relaxed.owl chlorinated hydrocarbon catabolism|chlorinated hydrocarbon degradation|chlorinated hydrocarbon breakdown biological_process owl:Class GO:2001269 biolink:NamedThing positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of initiator caspase activity|positive regulation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway pr 2011-12-13T07:56:26Z biological_process owl:Class GO:0099612 biolink:NamedThing protein localization to axon A process in which a protein is transported to or maintained in a location within an axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102535 biolink:NamedThing ladanein 6-O-methyltransferase activity Catalysis of the reaction: ladanein + S-adenosyl-L-methionine <=> H+ + salvigenin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14752 molecular_function owl:Class GO:0015013 biolink:NamedThing heparan sulfate proteoglycan biosynthetic process, linkage to polypeptide The polymerization of one or more heparan sulfate chains via a xylose link onto serine residues in the core protein of a proteoglycan. tmpzr1t_l9r_go_relaxed.owl heparin proteoglycan biosynthetic process, linkage to polypeptide|heparan sulphate proteoglycan biosynthetic process, linkage to polypeptide|heparan sulfate proteoglycan formation, linkage to polypeptide|heparan sulfate proteoglycan synthesis, linkage to polypeptide|heparan sulfate proteoglycan anabolism, linkage to polypeptide|heparan sulphate proteoglycan biosynthesis, linkage to polypeptide biological_process owl:Class GO:0018242 biolink:NamedThing protein O-linked glycosylation via serine The glycosylation of protein via the O3 atom of peptidyl-serine, forming O3-glycosyl-L-serine; the most common forms are N-acetylgalactosaminyl, mannosyl, galactosyl, and xylosyl serine. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation via serine RESID:AA0154 biological_process owl:Class GO:0050599 biolink:NamedThing deacetoxycephalosporin-C synthase activity Catalysis of the reaction: 2-oxoglutarate + O(2) + penicillin N = CO(2) + deacetoxycephalosporin C + H(2)O + succinate. tmpzr1t_l9r_go_relaxed.owl penicillin N expandase activity|penicillin-N,2-oxoglutarate:oxygen oxidoreductase (ring-expanding)|deacetoxycephalosporin C synthetase activity|DAOC synthase activity|DAOCS activity|expandase activity KEGG_REACTION:R05301|RHEA:20748|MetaCyc:1.14.20.1-RXN|EC:1.14.20.1 GO:0045441 molecular_function owl:Class GO:0004829 biolink:NamedThing threonine-tRNA ligase activity Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr). tmpzr1t_l9r_go_relaxed.owl TRS|threonine-transfer ribonucleate synthetase activity|L-threonine:tRNAThr ligase (AMP-forming)|threonyl-transfer RNA synthetase activity|threonyl-transfer ribonucleic acid synthetase activity|threonyl ribonucleic synthetase activity|threonyl-tRNA synthetase activity|threonine translase activity|threonyl-transfer ribonucleate synthetase activity MetaCyc:THREONINE--TRNA-LIGASE-RXN|EC:6.1.1.3|Reactome:R-HSA-380201|Reactome:R-HSA-380002|RHEA:24624 molecular_function owl:Class GO:0032823 biolink:NamedThing regulation of natural killer cell differentiation Any process that modulates the frequency, rate or extent of natural killer cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of natural killer cell development|regulation of NK cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0047118 biolink:NamedThing 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate reductase activity Catalysis of the reaction: 2,6-dioxo-6-phenylhexanoate + NADP(+) = 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 2,6-dioxo-6-phenylhexanoate:NADP+ delta2-oxidoreductase activity|2-hydroxy-6-oxo-phenylhexa-2,4-dienoate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity KEGG_REACTION:R03463|MetaCyc:1.3.1.40-RXN|EC:1.3.1.40|RHEA:24268 molecular_function owl:Class GO:0032828 biolink:NamedThing positive regulation of natural killer cell differentiation involved in immune response Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of natural killer cell development involved in immune response|stimulation of natural killer cell differentiation during immune response|upregulation of natural killer cell differentiation during immune response|positive regulation of NK cell differentiation during immune response|activation of natural killer cell differentiation during immune response|up regulation of natural killer cell differentiation during immune response|positive regulation of natural killer cell differentiation during immune response|up-regulation of natural killer cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:1902011 biolink:NamedThing poly(ribitol phosphate) teichoic acid metabolic process The chemical reactions and pathways involving poly(ribitol phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(ribitol phosphate) teichoic acid metabolism tb 2013-03-22T15:43:36Z biological_process owl:Class GO:0097016 biolink:NamedThing L27 domain binding Binding to a L27 domain of a protein. L27 is composed of conserved negatively charged amino acids and a conserved aromatic amino acid. L27 domains can assemble proteins involved in signaling and establishment and maintenance of cell polarity into complexes by interacting in a heterodimeric manner. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-23T02:17:51Z molecular_function owl:Class GO:2000513 biolink:NamedThing positive regulation of granzyme A production Any process that activates or increases the frequency, rate or extent of granzyme A production. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:31:36Z biological_process owl:Class GO:0035373 biolink:NamedThing chondroitin sulfate proteoglycan binding Binding to a chondroitin sulfate proteoglycan, any proteoglycan containing chondroitin sulfate as the glycosaminoglycan carbohydrate unit. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-12T10:23:55Z molecular_function owl:Class GO:0043394 biolink:NamedThing proteoglycan binding Binding to a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021620 biolink:NamedThing hypoglossal nerve formation The process that gives rise to the hypoglossal nerve. This process pertains to the initial formation of a structure from unspecified parts. This motor nerve innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. tmpzr1t_l9r_go_relaxed.owl CN XII biosynthesis|CN XII formation biological_process owl:Class GO:0043733 biolink:NamedThing DNA-3-methylbase glycosylase activity Catalysis of the reaction: DNA containing 3-methylbase + H2O = DNA with abasic site + 3-methylbase. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylpurine or 3-methylpyrimidine base and the deoxyribose sugar to remove the methylated base, leaving an apurinic or apyrimidinic site. tmpzr1t_l9r_go_relaxed.owl DNA-3-methyladenine glycosylase III|MagIII|Mag III molecular_function owl:Class GO:0003905 biolink:NamedThing alkylbase DNA N-glycosylase activity Catalysis of the reaction: DNA with alkylated base + H2O = DNA with abasic site + alkylated base. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar to remove an alkylated base, leaving an apyrimidinic or apurinic site. tmpzr1t_l9r_go_relaxed.owl DNA-3-methyladenine glycosylase II|DNA-3-methyladenine glycosidase II activity|DNA glycosidase II activity|3-methyladenine DNA glycosylase II|deoxyribonucleate 3-methyladenine glycosidase II|AlkA|alkylated-DNA glycohydrolase (releasing methyladenine and methylguanine)|alkylbase DNA glycosidase activity MetaCyc:3.2.2.21-RXN|EC:3.2.2.21 GO:0004036 molecular_function owl:Class GO:0102300 biolink:NamedThing linoleate 9R-lipoxygenase activity Catalysis of the reaction: linoleate + O2 = 9(R)-HPODE. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12760|EC:1.13.11.61|RHEA:31691 molecular_function owl:Class GO:0045552 biolink:NamedThing dihydrokaempferol 4-reductase activity Catalysis of the reaction: cis-3,4-leucopelargonidin + NADP+ = (+)-dihydrokaempferol + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl cis-3,4-leucopelargonidin:NADP+ 4-oxidoreductase activity|dihydroflavonol 4-reductase activity|dihydroquercetin reductase activity|dihydromyricetin reductase activity|dihydroflavanol 4-reductase activity|NADPH-dihydromyricetin reductase activity MetaCyc:DIHYDROKAEMPFEROL-4-REDUCTASE-RXN|RHEA:23016|EC:1.1.1.219 molecular_function owl:Class GO:0031879 biolink:NamedThing type 2 somatostatin receptor binding Binding to a type 2 somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl type 2 somatostatin receptor ligand molecular_function owl:Class GO:0031877 biolink:NamedThing somatostatin receptor binding Binding to a somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl somatostatin receptor ligand molecular_function owl:Class GO:0000736 biolink:NamedThing double-strand break repair via single-strand annealing, removal of nonhomologous ends During DSBR via single-strand annealing, the removal of nonhomologous sequences at the broken 3' single-strand DNA end before DNA repair synthesis can occur. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060496 biolink:NamedThing mesenchymal-epithelial cell signaling involved in lung development Any process that mediates the transfer of information from a mesenchymal cell to an epithelial cell and contributes to the development of the lung. tmpzr1t_l9r_go_relaxed.owl mesenchymal-epithelial cell signalling involved in lung development biological_process owl:Class GO:2001292 biolink:NamedThing codeine catabolic process The chemical reactions and pathways resulting in the breakdown of codeine, an alkaloid found in the opium poppy, Papaver somniferum var. album. Codeine has analgesic, anti-tussive and anti-diarrhoeal properties. tmpzr1t_l9r_go_relaxed.owl codeine catabolism|codeine degradation|codeine breakdown pr 2012-02-14T01:10:09Z biological_process owl:Class GO:0070540 biolink:NamedThing stearic acid binding Binding to stearic acid, the 18-carbon saturated fatty acid octadecanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016966 biolink:NamedThing nitric oxide reductase activity Catalysis of the reaction: H(2)O + 2 ferricytochrome c + nitrous oxide = 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide. tmpzr1t_l9r_go_relaxed.owl cytochrome bc nitric oxide reductase activity|nitrous-oxide:(acceptor) oxidoreductase (NO-forming)|nitrogen oxide reductase activity|CYP55|P450 nitric oxide reductase activity|P450nor|nitrous-oxide:acceptor oxidoreductase (NO-forming)|nitric-oxide reductase activity MetaCyc:NITRIC-OXIDE-REDUCTASE-RXN|RHEA:30211|KEGG_REACTION:R00294|EC:1.7.2.5 GO:0016968|GO:0016967 molecular_function owl:Class GO:2000723 biolink:NamedThing negative regulation of cardiac vascular smooth muscle cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of cardiac vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of heart vascular smooth muscle cell differentiation vk 2011-06-08T08:48:01Z biological_process owl:Class GO:2000722 biolink:NamedThing regulation of cardiac vascular smooth muscle cell differentiation Any process that modulates the frequency, rate or extent of cardiac vascular smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of heart vascular smooth muscle cell differentiation vk 2011-06-08T08:47:58Z biological_process owl:Class GO:0036030 biolink:NamedThing protein C inhibitor-plasma kallikrein complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and plasma kallikrein (KLK1B); formation of the complex inhibits the serine protease activity of plasma kallikrein. tmpzr1t_l9r_go_relaxed.owl plasma serine protease inhibitor-plasma kallikrein complex|PCI-plasma kallikrein complex|protein C inhibitor-KLKB1 complex|SERPINA5-plasma kallikrein complex|serpin A5-plasma kallikrein complex bf 2011-10-19T02:05:46Z cellular_component owl:Class GO:0016286 biolink:NamedThing small conductance calcium-activated potassium channel activity Enables the transmembrane transfer of potassium by a channel with a unit conductance of 2 to 20 picoSiemens that opens in response to stimulus by internal calcium ions. Small conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl small conductance KCa channels|SK KCa channels|SK calcium-activated potassium channel activity molecular_function owl:Class GO:0015269 biolink:NamedThing calcium-activated potassium channel activity Enables the calcium concentration-regulatable energy-independent passage of potassium ions across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061188 biolink:NamedThing negative regulation of ribosomal DNA heterochromatin assembly Any process that decreases the rate, frequency, or extent of the repression of assembly of rDNA heterochromatin. tmpzr1t_l9r_go_relaxed.owl negative regulation of chromatin silencing at rDNA https://github.com/geneontology/go-ontology/issues/19238 dph 2010-07-14T09:07:59Z biological_process owl:Class GO:1903933 biolink:NamedThing negative regulation of DNA primase activity Any process that stops, prevents or reduces the frequency, rate or extent of DNA primase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA primase activity|down regulation of DNA primase activity|inhibition of DNA primase activity|down-regulation of DNA primase activity mah 2015-02-12T14:28:36Z biological_process owl:Class GO:1900483 biolink:NamedThing regulation of protein targeting to vacuolar membrane Any process that modulates the frequency, rate or extent of protein targeting to vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl al 2012-05-02T10:13:23Z biological_process owl:Class GO:0060802 biolink:NamedThing epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification Any process that mediates the transfer of information from an epiblast cell to an extraembryonic ectoderm cell that contributes to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl epiblast cell-extraembryonic ectoderm cell signalling involved in anterior/posterior axis specification dph 2009-08-06T01:36:13Z biological_process owl:Class GO:0061199 biolink:NamedThing striated muscle contraction involved in embryonic body morphogenesis The process in which force is generated within striated embryonic muscle tissue, resulting in a contraction of the muscle that contributes to the formation of an embryo's characteristic body morphology. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-28T04:07:23Z biological_process owl:Class GO:1903506 biolink:NamedThing regulation of nucleic acid-templated transcription Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-01T14:44:47Z biological_process owl:Class GO:0016004 biolink:NamedThing phospholipase activator activity Increases the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a glycerophospholipid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070155 biolink:NamedThing mitochondrial methionyl-tRNA aminoacylation The process of coupling methionine to methionyl-tRNA in a mitochondrion, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006431 biolink:NamedThing methionyl-tRNA aminoacylation The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. The methionyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a methionine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008474 biolink:NamedThing palmitoyl-(protein) hydrolase activity Catalysis of the reaction: palmitoyl-protein + H2O = palmitate + protein. tmpzr1t_l9r_go_relaxed.owl palmitoyl-[protein] hydrolase|palmitoyl-protein thioesterase activity|palmitoyl-protein hydrolase activity|palmitoyl-protein thiolesterase activity Reactome:R-HSA-5690517|EC:3.1.2.22|Reactome:R-HSA-9647994|Reactome:R-HSA-8933328|RHEA:19233|Reactome:R-HSA-203613|MetaCyc:3.1.2.22-RXN molecular_function owl:Class GO:0071672 biolink:NamedThing negative regulation of smooth muscle cell chemotaxis Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl downregulation of smooth muscle cell chemotaxis|down regulation of smooth muscle cell chemotaxis|inhibition of smooth muscle cell chemotaxis|down-regulation of smooth muscle cell chemotaxis mah 2010-02-16T01:44:28Z biological_process owl:Class GO:0033572 biolink:NamedThing transferrin transport The directed movement of transferrin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl melanotransferrin transport biological_process owl:Class GO:0150190 biolink:NamedThing negative regulation of interleukin-32 production Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-32 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-32 secretion|negative regulation of interleukin-32 biosynthetic process bc 2020-02-21T10:31:53Z GO:0150193 biological_process owl:Class GO:0150189 biolink:NamedThing regulation of interleukin-32 production Any process that modulates the frequency, rate or extent of interleukin-32 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-32 secretion|regulation of interleukin-32 biosynthetic process bc 2020-02-21T10:28:36Z GO:0150192 biological_process owl:Class GO:0009724 biolink:NamedThing detection of abscisic acid stimulus The series of events in which an abscisic acid stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of abscisic acid stimulus biological_process owl:Class GO:0050116 biolink:NamedThing N,N-dimethylformamidase activity Catalysis of the reaction: N,N-dimethylformamide + H(2)O = dimethylamine + formate. tmpzr1t_l9r_go_relaxed.owl DMFase activity|N,N-dimethylformamide amidohydrolase activity|dimethylformamidase activity KEGG_REACTION:R02509|MetaCyc:NN-DIMETHYLFORMAMIDASE-RXN|EC:3.5.1.56|RHEA:19517 molecular_function owl:Class GO:0072552 biolink:NamedThing monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity Catalysis of the reaction: monoferuloyl di-(hydroxyferuloyl) spermidine + NADPH + O2 = tri-(hydroxyferuloyl) spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-25T03:15:31Z molecular_function owl:Class GO:1990280 biolink:NamedThing RNA localization to chromatin A process in which RNA is transported to and maintained in a part of a chromosome that is organized into chromatin. tmpzr1t_l9r_go_relaxed.owl RNA localisation to chromatin mah 2014-01-30T15:55:34Z biological_process owl:Class GO:2000685 biolink:NamedThing positive regulation of cellular response to X-ray Any process that activates or increases the frequency, rate or extent of cellular response to X-ray. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular response to X-ray radiation stimulus yaf 2011-05-10T01:40:49Z biological_process owl:Class GO:0036386 biolink:NamedThing bacterial nucleoid DNA packaging Compaction of DNA in a bacterial nucleoid into a compact structure. Often achieved by DNA supercoiling. tmpzr1t_l9r_go_relaxed.owl nucleoid compaction|prokaryotic DNA condensation|chromosomal compaction bf 2013-05-30T10:41:08Z biological_process owl:Class GO:0045721 biolink:NamedThing negative regulation of gluconeogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of gluconeogenesis|down regulation of gluconeogenesis|down-regulation of gluconeogenesis|downregulation of gluconeogenesis biological_process owl:Class GO:0032998 biolink:NamedThing Fc-epsilon receptor I complex A protein complex composed of an Fc-epsilon RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-episilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgE. tmpzr1t_l9r_go_relaxed.owl immunoglobulin E receptor complex|IgE receptor complex|FceRI complex cellular_component owl:Class GO:0035319 biolink:NamedThing imaginal disc-derived wing hair elongation Growth of a prehair in the approximately 10 hour period following its emergence from an epidermal cell in an imaginal disc-derived wing. Prehair elongation is guided and/or driven by the polymerization of actin filaments and the orderly crosslinking of filaments into bundles. tmpzr1t_l9r_go_relaxed.owl wing prehair extension|wing hair elongation biological_process owl:Class GO:0070906 biolink:NamedThing aspartate:alanine antiporter activity Catalysis of the reaction: aspartate(out) + alanine(in) = aspartate(in) + alanine(out). tmpzr1t_l9r_go_relaxed.owl aspartate/alanine antiporter activity|aspartate-alanine antiporter activity RHEA:33139 mah 2009-09-04T03:44:15Z molecular_function owl:Class GO:0097739 biolink:NamedThing negative regulation of ferrichrome biosynthetic process in response to iron Any process that stops, prevents or reduces the rate of ferrichrome biosynthetic process in response to an iron stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2016-10-18T17:00:24Z biological_process owl:Class GO:0034868 biolink:NamedThing 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity Catalysis of the reaction: 2,4,4-trimethyl-3-hydroxypentanoyl-CoA = 2,4,4-trimethyl-3-oxopentanoyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1273 molecular_function owl:Class GO:0021993 biolink:NamedThing initiation of neural tube closure The process in which closure points are established at multiple points and along the neural rostrocaudal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032052 biolink:NamedThing bile acid binding Binding to a bile acid, a steroid carboxylic acids occurring in bile. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901788 biolink:NamedThing benzoyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of benzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA catabolism|benzoyl-CoA degradation|benzoyl-CoA breakdown yaf 2013-01-16T11:13:59Z biological_process owl:Class GO:0020037 biolink:NamedThing heme binding Binding to a heme, a compound composed of iron complexed in a porphyrin (tetrapyrrole) ring. tmpzr1t_l9r_go_relaxed.owl haem binding molecular_function owl:Class GO:0044691 biolink:NamedThing tooth eruption The tooth development process in which the teeth enter the mouth and become visible. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Tooth_eruption jl 2012-08-15T14:58:17Z biological_process owl:Class GO:0007214 biolink:NamedThing gamma-aminobutyric acid signaling pathway The series of molecular signals generated by the binding of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl 4-aminobutyrate signaling pathway|4-aminobutanoate signalling pathway|GABA signaling pathway|4-aminobutanoate signaling pathway|4-aminobutyrate signalling pathway|gamma-aminobutyric acid signalling pathway|GABA signalling pathway biological_process owl:Class GO:0046105 biolink:NamedThing thymidine biosynthetic process The chemical reactions and pathways resulting in the formation of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA. tmpzr1t_l9r_go_relaxed.owl deoxyribosylthymine biosynthetic process|thymidine synthesis|thymidine formation|thymidine biosynthesis|deoxyribosylthymine biosynthesis|thymidine anabolism biological_process owl:Class GO:0008679 biolink:NamedThing 2-hydroxy-3-oxopropionate reductase activity Catalysis of the reaction: (R)-glycerate + NADP+ = 2-hydroxy-3-oxopropanoate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl tartronate semialdehyde reductase (NADPH) activity|(R)-glycerate:NAD(P)+ oxidoreductase activity EC:1.1.1.60|MetaCyc:TSA-REDUCT-RXN|RHEA:18841 molecular_function owl:Class GO:0097630 biolink:NamedThing intrinsic component of omegasome membrane The component of the omegasome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to omegasome membrane cellular_component owl:Class GO:0015829 biolink:NamedThing valine transport The directed movement of valine, 2-amino-3-methylbutanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-valine transport biological_process owl:Class GO:0005545 biolink:NamedThing 1-phosphatidylinositol binding Binding to a phosphatidylinositol, a glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004958 biolink:NamedThing prostaglandin F receptor activity Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PGF receptor activity|PGF(2-alpha) receptor activity molecular_function owl:Class GO:1901394 biolink:NamedThing positive regulation of transforming growth factor beta1 activation Any process that activates or increases the frequency, rate or extent of transforming growth factor beta1 activation. tmpzr1t_l9r_go_relaxed.owl up-regulation of latent-TGF-beta1 activation|up-regulation of transforming growth factor beta1 activation|activation of TGFB1 activation|positive regulation of L-TGF-beta 1 activation|upregulation of TGFbeta 1 activation|upregulation of transforming growth factor beta1 activation|up regulation of TGFB1 activation|up regulation of TGFbeta 1 activation|positive regulation of TGFbeta 1 activation|upregulation of latent-TGF-beta1 activation|positive regulation of TGF-beta 1 activation|up regulation of transforming growth factor-beta1 activation|upregulation of transforming growth factor-beta1 activation|upregulation of TGF-beta 1 activation|up regulation of L-TGF-beta 1 activation|activation of TGFbeta 1 activation|up-regulation of L-TGF-beta 1 activation|activation of TGF-beta 1 activation|up-regulation of TGFbeta 1 activation|up-regulation of transforming growth factor-beta1 activation|positive regulation of latent-TGF-beta1 activation|upregulation of L-TGF-beta 1 activation|upregulation of TGFB1 activation|positive regulation of transforming growth factor-beta1 activation|activation of transforming growth factor beta1 activation|activation of transforming growth factor-beta1 activation|up-regulation of TGFB1 activation|positive regulation of TGFB1 activation|up regulation of TGF-beta 1 activation|activation of latent-TGF-beta1 activation|up regulation of transforming growth factor beta1 activation|activation of L-TGF-beta 1 activation|up-regulation of TGF-beta 1 activation|up regulation of latent-TGF-beta1 activation bf 2012-10-01T10:41:33Z biological_process owl:Class GO:0016116 biolink:NamedThing carotenoid metabolic process The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. tmpzr1t_l9r_go_relaxed.owl carotenoid metabolism biological_process owl:Class GO:0043510 biolink:NamedThing activin B complex A nonsteroidal regulator, composed of two covalently linked inhibin beta-B subunits (sometimes known as activin beta-B or activin/inhibin beta-B). tmpzr1t_l9r_go_relaxed.owl Note that the actions of the activin complex are the opposite of those of the inhibin complex, which is a dimer of an inhibin beta-A or inhibin beta-B subunit and a inhibin alpha subunit. See 'inhibin complex ; GO:0043511'. GO:0048182 cellular_component owl:Class GO:0080093 biolink:NamedThing regulation of photorespiration Any process that modulates the rate, frequency or extent of photorespiration. Photorespiration is a light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T04:44:48Z biological_process owl:Class GO:0090352 biolink:NamedThing regulation of nitrate assimilation Any process that modulates the rate, frequency, or extent of the uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-10T04:11:13Z biological_process owl:Class GO:1990236 biolink:NamedThing proteasome core complex import into nucleus The directed movement of the proteasome core complex (AKA core particle (CP)) from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl rb 2013-11-14T23:27:24Z biological_process owl:Class GO:0102974 biolink:NamedThing hydroxyversicolorone reductase activity Catalysis of the reaction: versicolorone + NADP = hydroxyversicolorone + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9489|RHEA:35691|EC:1.1.1.353 molecular_function owl:Class GO:0019304 biolink:NamedThing anaerobic rhamnose catabolic process The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose, that occurs in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic rhamnose breakdown|anaerobic rhamnose degradation|anaerobic rhamnose catabolism biological_process owl:Class GO:0075046 biolink:NamedThing positive regulation of formation by symbiont of haustorium for nutrient acquisition from host Any process that activates or increases the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0043782 biolink:NamedThing cobalt-precorrin-3 C17-methyltransferase activity Catalysis of the reaction: cobalt-precorrin 3 + S-adenosyl-L-methionine = cobalt-precorrin 4 + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl cobalt-precorrin 3 C17-methyltransferase activity|cobalt-precorrin-3B C17-methyltransferase activity|cobalt-precorrin-3 methyltransferase|cobalt-precorrin-3 methylase RHEA:26273|MetaCyc:RXN-8761 molecular_function owl:Class GO:0016259 biolink:NamedThing selenocysteine metabolic process The chemical reactions and pathways involving selenocysteine, an essential component of glutathione peroxidase and some other proteins. tmpzr1t_l9r_go_relaxed.owl selenocysteine metabolism biological_process owl:Class GO:0039714 biolink:NamedThing cytoplasmic viral factory A viral factory located in the cytoplasm of a host cell. tmpzr1t_l9r_go_relaxed.owl bf 2013-12-19T15:16:15Z cellular_component owl:Class GO:0020004 biolink:NamedThing symbiont-containing vacuolar space The space between a symbiont plasma membrane and the symbiont-containing vacuole membrane. tmpzr1t_l9r_go_relaxed.owl symbiont-containing vacuole space|parasitophorous vacuolar space cellular_component owl:Class GO:1900212 biolink:NamedThing negative regulation of mesenchymal cell apoptotic process involved in metanephros development Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal cell apoptotic process involved in metanephros development. tmpzr1t_l9r_go_relaxed.owl downregulation of mesenchymal cell apoptosis involved in metanephros development|inhibition of mesenchymal cell apoptosis involved in metanephros development|negative regulation of mesenchymal cell apoptosis involved in metanephros development|down regulation of mesenchymal cell apoptosis involved in metanephros development|down-regulation of mesenchymal cell apoptosis involved in metanephros development yaf 2012-03-22T10:53:00Z biological_process owl:Class GO:0023024 biolink:NamedThing MHC class I protein complex binding Binding to a class I major histocompatibility complex. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:1902190 biolink:NamedThing 2-methylbutanoyl-CoA(4-) catabolic process The chemical reactions and pathways resulting in the breakdown of 2-methylbutanoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbutanoyl-CoA(4-) degradation|2-methylbutanoyl-CoA(4-) breakdown|2-methylbutanoyl-CoA(4-) catabolism ms 2013-06-06T09:40:20Z biological_process owl:Class GO:1902189 biolink:NamedThing 2-methylbutanoyl-CoA(4-) metabolic process The chemical reactions and pathways involving 2-methylbutanoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbutanoyl-CoA(4-) metabolism ms 2013-06-06T09:40:14Z biological_process owl:Class GO:0018389 biolink:NamedThing N-terminal peptidyl-valine deamination The deamination of the N-terminal valine residue of a protein to form isobutyrate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018058 biolink:NamedThing N-terminal protein amino acid deamination, from amino carbon The oxidative deamination of the alpha carbon of an encoded N-terminal amino acid, to form pyruvic acid retaining an amide bond between its 1-carboxyl group and the adjacent residue. The pyruvate 2-oxo group may become an enzyme active site, or it may be reduced to an alcohol. tmpzr1t_l9r_go_relaxed.owl RESID:AA0128|RESID:AA0129|RESID:AA0127 biological_process owl:Class GO:0004679 biolink:NamedThing AMP-activated protein kinase activity Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. This reaction requires the presence of AMP. tmpzr1t_l9r_go_relaxed.owl SNF1A/AMP-activated protein kinase activity|5'-AMP-activated protein kinase activity|AMPK activity Reactome:R-HSA-6805470|Reactome:R-HSA-163691|Reactome:R-HSA-200423|Reactome:R-HSA-447074|Reactome:R-HSA-5673768|Reactome:R-HSA-1592244|EC:2.7.11.11|Reactome:R-HSA-380927 molecular_function owl:Class GO:0045342 biolink:NamedThing MHC class II biosynthetic process The chemical reactions and pathways resulting in the formation of major histocompatibility protein class II. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex class II biosynthetic process|major histocompatibility complex class II biosynthesis|MHC class II biosynthesis|MHC class II formation|MHC class II synthesis|MHC class II anabolism biological_process owl:Class GO:0051565 biolink:NamedThing negative regulation of smooth endoplasmic reticulum calcium ion concentration Any process that decreases the concentration of calcium ions in the smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl smooth ER calcium ion concentration reduction|reduction of smooth ER calcium ion concentration|smooth endoplasmic reticulum calcium ion concentration reduction|reduction of smooth endoplasmic reticulum calcium ion concentration|reduction of calcium ion concentration in smooth endoplasmic reticulum|reduction of calcium ion concentration in smooth ER biological_process owl:Class GO:0032471 biolink:NamedThing negative regulation of endoplasmic reticulum calcium ion concentration Any process that decreases the concentration of calcium ions in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum calcium ion concentration reduction|reduction of ER calcium ion concentration|reduction of calcium ion concentration in endoplasmic reticulum|reduction of calcium ion concentration in ER|ER calcium ion concentration reduction|reduction of endoplasmic reticulum calcium ion concentration biological_process owl:Class GO:0072201 biolink:NamedThing negative regulation of mesenchymal cell proliferation Any process that decreases the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T03:43:29Z biological_process owl:Class GO:0097659 biolink:NamedThing nucleic acid-templated transcription The cellular synthesis of RNA on a template of nucleic acid (DNA or RNA). tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. pr 2014-10-01T13:49:27Z biological_process owl:Class GO:0047512 biolink:NamedThing (S,S)-butanediol dehydrogenase activity Catalysis of the reaction: (S,S)-butane-2,3-diol + NAD(+) = acetoin + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-butanediol dehydrogenase activity|(S,S)-butane-2,3-diol:NAD+ oxidoreductase activity|L-BDH|L(+)-2,3-butanediol dehydrogenase (L-acetoin forming) EC:1.1.1.76|KEGG_REACTION:R03707|RHEA:12184|MetaCyc:SS-BUTANEDIOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0032923 biolink:NamedThing organic phosphonate biosynthetic process The chemical reactions and pathways resulting in the formation of phosphonates, any organic compound containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Synthesis of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included. tmpzr1t_l9r_go_relaxed.owl organophosphonate biosynthetic process biological_process owl:Class GO:0070077 biolink:NamedThing histone arginine demethylation The modification of a histone by the removal of a methyl group from an arginine residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051676 biolink:NamedThing pullulan metabolic process The chemical reactions and pathways involving pullulan, a neutral linear polysaccharide composed of repeating units of maltotriose joined by alpha-(1,6)-linkages. tmpzr1t_l9r_go_relaxed.owl pullulan metabolism biological_process owl:Class GO:0019776 biolink:NamedThing Atg8 ligase activity Catalysis of the covalent attachment of the ubiquitin-like protein Atg8 to substrate molecules; phosphatidylethanolamine is a known substrate. tmpzr1t_l9r_go_relaxed.owl APG8 conjugating enzyme activity|APG8 ligase activity|Atg8 conjugating enzyme activity Reactome:R-HSA-5681981 molecular_function owl:Class GO:0016606 biolink:NamedThing LYSP100-associated nuclear domain A nuclear body that is enriched in the lymphoid cell-specific protein LYSp100B; LANDs are globular, electron-dense structures and are morphologically distinct from the annular structures characteristic of PML bodies. tmpzr1t_l9r_go_relaxed.owl LANDs cellular_component owl:Class GO:1900421 biolink:NamedThing positive regulation of cellular alcohol catabolic process Any process that activates or increases the frequency, rate or extent of cellular alcohol catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular alcohol catabolic process|activation of cellular alcohol catabolic process|upregulation of cellular alcohol catabolic process|up regulation of cellular alcohol catabolic process krc 2012-04-20T10:21:46Z biological_process owl:Class GO:1900419 biolink:NamedThing regulation of cellular alcohol catabolic process Any process that modulates the frequency, rate or extent of cellular alcohol catabolic process. tmpzr1t_l9r_go_relaxed.owl krc 2012-04-20T10:21:18Z biological_process owl:Class GO:1900364 biolink:NamedThing negative regulation of mRNA polyadenylation Any process that stops, prevents or reduces the frequency, rate or extent of mRNA polyadenylation. tmpzr1t_l9r_go_relaxed.owl negative regulation of mRNA polyadenylylation|inhibition of cleavage and polyadenylylation specificity factor activity|downregulation of mRNA polyadenylylation|downregulation of cleavage and polyadenylylation specificity factor activity|down regulation of mRNA polyadenylylation|down-regulation of mRNA polyadenylation|down-regulation of mRNA polyadenylylation|inhibition of mRNA polyadenylation|downregulation of mRNA polyadenylation|down regulation of mRNA polyadenylation|inhibition of mRNA polyadenylylation|down-regulation of cleavage and polyadenylylation specificity factor activity|negative regulation of cleavage and polyadenylylation specificity factor activity|down regulation of cleavage and polyadenylylation specificity factor activity pr 2012-04-12T04:36:31Z biological_process owl:Class GO:0035669 biolink:NamedThing TRAM-dependent toll-like receptor 4 signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor 4 where the TRAM adaptor mediates transduction of the signal. Toll-like 4 receptors are pattern recognition receptors that bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl TRAM-dependent toll-like receptor 4 signalling pathway|TRAM-dependent TLR4 signaling pathway bf 2011-02-01T02:41:09Z biological_process owl:Class GO:0034142 biolink:NamedThing toll-like receptor 4 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 4. tmpzr1t_l9r_go_relaxed.owl TLR4 signaling pathway|toll-like receptor 4 signalling pathway biological_process owl:Class GO:0007035 biolink:NamedThing vacuolar acidification Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002119 biolink:NamedThing nematode larval development The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060583 biolink:NamedThing regulation of actin cortical patch localization Any process that modulates the localization of an actin cortical patch. An actin cortical patch is a discrete actin-containing structure found just beneath the plasma membrane in fungal cells. tmpzr1t_l9r_go_relaxed.owl regulation of actin cortical patch localisation dph 2009-05-08T01:58:42Z biological_process owl:Class GO:0071896 biolink:NamedThing protein localization to adherens junction Any process in which a protein is transported to, and/or maintained at the adherens junction. tmpzr1t_l9r_go_relaxed.owl protein localisation in cell-cell adherens junction|protein localization to cell-cell adherens junction|protein localisation in adherens junction|protein localisation to adherens junction|protein localisation to cell-cell adherens junction|protein localization in cell-cell adherens junction|protein localization in adherens junction mah 2010-09-14T04:03:27Z GO:1904696 biological_process owl:Class GO:0045265 biolink:NamedThing proton-transporting ATP synthase, stator stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the membrane-associated Fo proteins; is thought to prevent futile rotation of the catalytic core. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, stator stalk cellular_component owl:Class GO:1905318 biolink:NamedThing meiosis I spindle assembly checkpoint signaling Any spindle assembly checkpoint that is involved in meiosis I. tmpzr1t_l9r_go_relaxed.owl meiosis I spindle assembly checkpoint https://github.com/geneontology/go-ontology/issues/20935 vw 2016-07-13T18:25:06Z biological_process owl:Class GO:0033316 biolink:NamedThing meiotic spindle assembly checkpoint signaling A signal transduction process that contributes to a meiotic spindle assembly checkpoint, that delays the metaphase/anaphase transition of a meiotic cell cycle until the spindle is correctly assembled and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl meiotic spindle assembly checkpoint|signal transduction involved in meiotic spindle assembly checkpoint https://github.com/geneontology/go-ontology/issues/20935 GO:0072465 biological_process owl:Class GO:0050740 biolink:NamedThing protein-FMN linkage via O3-riboflavin phosphoryl-L-threonine The formation of a protein-FMN linkage via O3-riboflavin phosphoryl-L-threonine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0349 biological_process owl:Class GO:0140078 biolink:NamedThing class I DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the cleavage of an AP site 3' of the baseless site by a beta-lyase mechanism, leaving an unsaturated aldehyde, termed a 3'-(4-hydroxy-5-phospho-2-pentenal) residue, and a 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl AP endonuclease class I activity|AP site-DNA 5'-phosphomonoester-lyase activity|class I DNA-(apurinic or apyrimidinic site) lyase activity|DNA-(apurinic or apyrimidinic site) lyase activity|DNA-(apurinic or apyrimidinic site) 5'-phosphomonoester-lyase activity https://github.com/geneontology/go-ontology/issues/22262 RHEA:66592|Wikipedia:AP_endonuclease|MetaCyc:4.2.99.18-RXN|EC:4.2.99.18 Note that this term is does not have parentage in the 'nuclease activity' branch of the ontology because both GO and the Enzyme Commission define nuclease activity as a type of hydrolysis. Class II AP endonuclease is a nuclease, but not Class I, III and IV. pg 2017-07-24T11:33:34Z molecular_function owl:Class GO:0003906 biolink:NamedThing DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER). tmpzr1t_l9r_go_relaxed.owl UV endonuclease|abasic deoxyendoribonuclease activity|apyrimidinic deoxyendoribonuclease activity|apurinic/apyrimidinic endodeoxyribonuclease activity|deoxyribonuclease (apurinic or apyrimidinic) activity|AP deoxyendoribonuclease activity|endonuclease VIII activity|apurinic deoxyendoribonuclease activity https://github.com/geneontology/go-ontology/issues/15308|https://github.com/geneontology/go-ontology/issues/22262|https://github.com/geneontology/go-ontology/issues/15357 Reactome:R-HSA-5649725|Reactome:R-HSA-110375|Reactome:R-HSA-5649711 Note that this term is does not have parentage in the 'nuclease activity' branch of the ontology because both GO and the Enzyme Commission define nuclease activity as a type of hydrolysis. Class II AP endonuclease is a nuclease, but not Class I, III and IV. molecular_function owl:Class GO:0035727 biolink:NamedThing lysophosphatidic acid binding Binding to lysophosphatidic acid (LPA), a phospholipid derivative that acts as a potent mitogen due to its activation of high-affinity G protein-coupled receptors. tmpzr1t_l9r_go_relaxed.owl LPA binding bf 2011-03-10T03:00:05Z molecular_function owl:Class GO:0009072 biolink:NamedThing aromatic amino acid family metabolic process The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). tmpzr1t_l9r_go_relaxed.owl aromatic amino acid family metabolism biological_process owl:Class GO:0003827 biolink:NamedThing alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 3-(alpha-D-mannosyl)-beta-D-mannosyl-R + UDP-N-acetyl-alpha-D-glucosamine = 3-(2-[N-acetyl-beta-D-glucosaminyl]-alpha-D-mannosyl)-beta-D-mannosyl-R + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl GnTI|UDP-N-acetyl-D-glucosamine:3-(alpha-D-mannosyl)-beta-D-mannosyl-glycoprotein 2-beta-N-acetyl-D-glucosaminyltransferase activity|UDP-N-acetylglucosaminyl:alpha-1,3-D-mannoside-beta-1,2-N-acetylglucosaminyltransferase I activity|alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase activity|GNTI activity|alpha-1,3-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity|UDP-N-acetylglucosaminyl:alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I activity|uridine diphosphoacetylglucosamine-alpha-1,3-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity|N-acetylglucosaminyltransferase I activity KEGG_REACTION:R05983|Reactome:R-HSA-964768|MetaCyc:2.4.1.101-RXN|RHEA:11456|EC:2.4.1.101 molecular_function owl:Class GO:0019876 biolink:NamedThing nylon catabolic process The chemical reactions and pathways resulting in the breakdown of nylon, a polymer where the main polymer chain comprises recurring amide groups; these compounds are generally formed from combinations of diamines, diacids and amino acids. tmpzr1t_l9r_go_relaxed.owl nylon breakdown|nylon degradation|nylon catabolism biological_process owl:Class GO:0061559 biolink:NamedThing cranial ganglion morphogenesis The process in which the anatomical structure of a cranial ganglion is generated and organized. tmpzr1t_l9r_go_relaxed.owl cranial ganglia morphogenesis dph 2013-07-10T09:02:15Z biological_process owl:Class GO:0030414 biolink:NamedThing peptidase inhibitor activity Binds to and stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. tmpzr1t_l9r_go_relaxed.owl protease inhibitor activity molecular_function owl:Class GO:0047490 biolink:NamedThing pectin lyase activity Catalysis of the reaction: a pectin = an oligosaccharide with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronate end + a pectin. This reaction is the eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their nonreducing ends. tmpzr1t_l9r_go_relaxed.owl endo-pectin lyase activity|polymethylgalacturonic transeliminase activity|pectin trans-eliminase activity|pectolyase activity|PNL activity|PMGL activity|(1->4)-6-O-methyl-alpha-D-galacturonan lyase activity|PL activity|pectin methyltranseliminase activity EC:4.2.2.10|MetaCyc:4.2.2.10-RXN molecular_function owl:Class GO:0030253 biolink:NamedThing protein secretion by the type I secretion system The process in which proteins are secreted into the extracellular milieu via the type I secretion system; secretion occurs in a continuous process without the distinct presence of periplasmic intermediates and does not involve proteolytic processing of secreted proteins. tmpzr1t_l9r_go_relaxed.owl type I protein secretion system|protein secretion by the TOSS|protein secretion by the type I protein secretion system Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular component term 'type I protein secretion system complex ; GO:0030256'. biological_process owl:Class GO:1901858 biolink:NamedThing regulation of mitochondrial DNA metabolic process Any process that modulates the frequency, rate or extent of mitochondrial DNA metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of mtDNA metabolic process|regulation of mitochondrial DNA metabolism|regulation of mtDNA metabolism yaf 2013-02-01T10:05:04Z biological_process owl:Class GO:0051087 biolink:NamedThing chaperone binding Binding to a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. tmpzr1t_l9r_go_relaxed.owl co-chaperone activity|chaperone protein binding|co-chaperonin activity molecular_function owl:Class GO:2000563 biolink:NamedThing positive regulation of CD4-positive, alpha-beta T cell proliferation Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:01:15Z biological_process owl:Class GO:2000516 biolink:NamedThing positive regulation of CD4-positive, alpha-beta T cell activation Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell activation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-22T10:37:06Z biological_process owl:Class GO:0033591 biolink:NamedThing response to L-ascorbic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus. tmpzr1t_l9r_go_relaxed.owl response to ascorbic acid|response to vitamin C|response to L-ascorbate biological_process owl:Class GO:0004446 biolink:NamedThing inositol-hexakisphosphate phosphatase activity Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = myo-inositol pentakisphosphate (mixed isomers) + phosphate. tmpzr1t_l9r_go_relaxed.owl multiple inositol-polyphosphate phosphatase activity|1D-myo-inositol-hexakisphosphate 5-phosphohydrolase activity|inositol tetrakisphosphate phosphomonoesterase activity|MIPP activity MetaCyc:RXN-7920|EC:3.1.3.62 molecular_function owl:Class GO:0140145 biolink:NamedThing copper ion export from vacuole The directed movement of copper ions out of the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl pg 2017-12-13T15:02:39Z biological_process owl:Class GO:0060003 biolink:NamedThing copper ion export The directed movement of copper ions out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl copper export biological_process owl:Class GO:0060270 biolink:NamedThing main body follicle cell migration The ovarian follicle cell migration process in which follicle cells migrate posteriorly to form a columnar epithelium over the oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051757 biolink:NamedThing meiotic sister chromatid separation The process in which sister chromatids are physically detached from each other during meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic sister chromatid resolution biological_process owl:Class GO:1901436 biolink:NamedThing positive regulation of toluene catabolic process Any process that activates or increases the frequency, rate or extent of toluene catabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of toluene breakdown|upregulation of toluene catabolic process|activation of toluene catabolism|positive regulation of toluene catabolism|up regulation of toluene breakdown|up regulation of toluene catabolism|upregulation of toluene catabolism|activation of toluene breakdown|up-regulation of toluene breakdown|up-regulation of toluene catabolic process|positive regulation of toluene breakdown|up-regulation of toluene degradation|activation of toluene degradation|up regulation of toluene degradation|up-regulation of toluene catabolism|activation of toluene catabolic process|upregulation of toluene degradation|up regulation of toluene catabolic process|positive regulation of toluene degradation tt 2012-10-01T21:13:57Z biological_process owl:Class GO:0007576 biolink:NamedThing nucleolar fragmentation The cell aging process that results in the nucleolus breaking down into fragments. tmpzr1t_l9r_go_relaxed.owl nucleolar size increase GO:0046616 biological_process owl:Class GO:0007000 biolink:NamedThing nucleolus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. tmpzr1t_l9r_go_relaxed.owl nucleolus organization and biogenesis|nucleolus organisation biological_process owl:Class GO:0071682 biolink:NamedThing endocytic vesicle lumen The volume enclosed by the membrane of an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-18T04:21:53Z cellular_component owl:Class GO:0045742 biolink:NamedThing positive regulation of epidermal growth factor receptor signaling pathway Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl upregulation of epidermal growth factor receptor signaling pathway|positive regulation of EGF receptor signaling pathway|positive regulation of EGF receptor signalling pathway|up regulation of epidermal growth factor receptor signaling pathway|activation of epidermal growth factor receptor signaling pathway|up-regulation of epidermal growth factor receptor signaling pathway|stimulation of epidermal growth factor receptor signaling pathway|positive regulation of EGFR signaling pathway biological_process owl:Class GO:1990471 biolink:NamedThing piRNA uni-strand cluster binding Binding to uni-strand piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs) that map predominantly to only one strand and exhibit hallmarks of canonical Pol II transcription. Uni-strand piRNA clusters are found in many taxa. tmpzr1t_l9r_go_relaxed.owl bhm 2014-08-29T14:37:35Z molecular_function owl:Class GO:0042986 biolink:NamedThing positive regulation of amyloid precursor protein biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta. tmpzr1t_l9r_go_relaxed.owl positive regulation of APP biosynthetic process|stimulation of amyloid precursor protein biosynthetic process|positive regulation of APP biosynthesis|up regulation of amyloid precursor protein biosynthetic process|positive regulation of amyloid precursor protein anabolism|positive regulation of amyloid precursor protein synthesis|activation of amyloid precursor protein biosynthetic process|positive regulation of amyloid precursor protein formation|up-regulation of amyloid precursor protein biosynthetic process|positive regulation of amyloid precursor protein biosynthesis|upregulation of amyloid precursor protein biosynthetic process biological_process owl:Class GO:0001183 biolink:NamedThing transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I promoter for the nuclear large ribosomal RNA (rRNA) transcript by the addition of ribonucleotides catalyzed by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl krc 2011-08-15T03:57:25Z biological_process owl:Class GO:1901800 biolink:NamedThing positive regulation of proteasomal protein catabolic process Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of proteasomal protein catabolic process|upregulation of proteasomal protein catabolic process|up regulation of proteasome-mediated protein catabolic process|up-regulation of proteasomal protein catabolic process|positive regulation of proteasome-mediated protein catabolic process|positive regulation of proteasome-mediated protein catabolism|up regulation of proteasomal protein catabolic process|upregulation of proteasome-mediated protein catabolism|up-regulation of proteasome-mediated protein catabolic process|up regulation of proteasome-mediated protein catabolism|activation of proteasome-mediated protein catabolism|upregulation of proteasome-mediated protein catabolic process|activation of proteasome-mediated protein catabolic process|up-regulation of proteasome-mediated protein catabolism rl 2013-01-21T20:10:58Z biological_process owl:Class GO:0048695 biolink:NamedThing negative regulation of collateral sprouting of injured axon Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl inhibition of collateral sprouting of injured axon|downregulation of collateral sprouting of injured axon|down-regulation of collateral sprouting of injured axon|down regulation of collateral sprouting of injured axon biological_process owl:Class GO:0050957 biolink:NamedThing equilibrioception The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion. tmpzr1t_l9r_go_relaxed.owl sensory perception of orientation with respect to gravity Wikipedia:Equilibrioception biological_process owl:Class GO:0097587 biolink:NamedThing MutLgamma complex A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In S. cerevisiae the complex consists of two subunits, Mlh1 and Mlh3. tmpzr1t_l9r_go_relaxed.owl pr 2014-03-06T11:48:12Z cellular_component owl:Class GO:0080011 biolink:NamedThing baruol synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = baruol. Baruol is also known as D:B-Friedo-Baccharan-5,21-dien-3-ol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9685|RHEA:31987|EC:5.4.99.57 molecular_function owl:Class GO:0097339 biolink:NamedThing glycolate transmembrane transport The process in which glycolate is transported across a membrane. Glycolate is the anion of hydroxyethanoic acid (glycolic acid). tmpzr1t_l9r_go_relaxed.owl glycolate membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. pr 2012-06-12T05:12:35Z biological_process owl:Class GO:1900866 biolink:NamedThing glycolate transport The directed movement of a glycolate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T04:29:56Z biological_process owl:Class GO:1900701 biolink:NamedThing regulation of orcinol biosynthetic process Any process that modulates the frequency, rate or extent of orcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of orcinol anabolism|regulation of orcinol biosynthesis|regulation of orcinol synthesis|regulation of orcinol formation di 2012-05-22T04:57:59Z biological_process owl:Class GO:0003435 biolink:NamedThing smoothened signaling pathway involved in growth plate cartilage chondrocyte development The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened that contributes to the progression of a growth plate cartilage chondrocyte over time. tmpzr1t_l9r_go_relaxed.owl hedgehog signaling pathway involved in growth plate cartilage chondrocyte development|hh signaling pathway involved in growth plate cartilage chondrocyte development|smoothened signalling pathway involved in growth plate cartilage chondrocyte development dph 2009-12-22T01:02:42Z biological_process owl:Class GO:2000710 biolink:NamedThing negative regulation of maintenance of meiotic sister chromatid cohesion, centromeric Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion in the centromeric region. tmpzr1t_l9r_go_relaxed.owl negative regulation of maintenance of meiotic sister chromatin cohesion at centromere|negative regulation of maintenance of centromeric meiotic sister chromatin cohesion|negative regulation of maintenance of sister chromatin cohesion at centromere at meiosis I mah 2011-06-01T12:41:16Z biological_process owl:Class GO:0043502 biolink:NamedThing regulation of muscle adaptation Any process that modulates the frequency, rate or extent of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl regulation of muscle plasticity biological_process owl:Class GO:0070518 biolink:NamedThing alpha4-beta1 integrin-CD53 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD53, a member of the tetraspan family. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-CD53 complex cellular_component owl:Class GO:0015942 biolink:NamedThing formate metabolic process The chemical reactions and pathways involving formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. tmpzr1t_l9r_go_relaxed.owl formate metabolism biological_process owl:Class GO:0033185 biolink:NamedThing dolichol-phosphate-mannose synthase complex A protein complex that possesses dolichyl-phosphate beta-D-mannosyltransferase activity; contains a catalytic subunit, a regulatory subunit, and a third subunit that stabilizes the complex. In human and several other metazoa, the subunits are named DPM1, DPM2 and DPM3, respectively. tmpzr1t_l9r_go_relaxed.owl DPM synthase complex|dolichyl-phosphate beta-D-mannosyltransferase complex cellular_component owl:Class GO:0031501 biolink:NamedThing mannosyltransferase complex A complex that posseses mannosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002529 biolink:NamedThing regulation of plasma kallikrein-kinin cascade Any process that modulates the frequency, rate, or extent of the plasma kallikrein-kinin cascade. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003858 biolink:NamedThing 3-hydroxybutyrate dehydrogenase activity Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD(+) = acetoacetate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-beta-hydroxybutyrate dehydrogenase activity EC:1.1.1.30|Reactome:R-HSA-73912|MetaCyc:3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN|KEGG_REACTION:R01361|Reactome:R-HSA-73920|Reactome:R-HSA-5696457|RHEA:20521 molecular_function owl:Class GO:2000659 biolink:NamedThing regulation of interleukin-1-mediated signaling pathway Any process that modulates the frequency, rate or extent of interleukin-1-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-1-mediated signalling pathway|regulation of interleukin-1 beta-mediated signaling pathway|regulation of IL-1-mediated signaling pathway|regulation of interleukin-1 alpha-mediated signaling pathway|regulation of IL-1 alpha-mediated signaling pathway|regulation of IL-1 beta-mediated signaling pathway dph 2011-05-03T07:13:31Z biological_process owl:Class GO:0021622 biolink:NamedThing oculomotor nerve morphogenesis The process in which the anatomical structure of the oculomotor nerve is generated and organized. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle. tmpzr1t_l9r_go_relaxed.owl CN III morphogenesis biological_process owl:Class GO:0060505 biolink:NamedThing epithelial cell proliferation involved in lung bud dilation The multiplication or reproduction of epithelial cells that contribute to the radial growth of a lung bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034756 biolink:NamedThing regulation of iron ion transport Any process that modulates the frequency, rate or extent of the directed movement of iron ions (Fe) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl regulation of iron ion import|regulation of iron transport|regulation of iron import|regulation of Fe transport mah 2012-04-18T04:00:14Z GO:1900390 biological_process owl:Class GO:0000380 biolink:NamedThing alternative mRNA splicing, via spliceosome The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition. tmpzr1t_l9r_go_relaxed.owl splice site selection|alternative nuclear mRNA splicing, via spliceosome Note that this process most commonly occurs in cis, selecting or skipping exons from the same primary transcript, but it has also been observed to occur in trans at low frequency, at least in some mammals. biological_process owl:Class GO:0000398 biolink:NamedThing mRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. tmpzr1t_l9r_go_relaxed.owl mRNA splicing|splicing GT-AG intron|splicing AT-AC intron|nuclear mRNA splicing, via spliceosome|nuclear mRNA splicing via U2-type spliceosome|nuclear mRNA splicing via U12-type spliceosome|pre-mRNA splicing Note that although the many U12-type introns have the sequence AT-AC at the intron termini, some introns with these terminal sequences are spliced by the U2-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron. Note that although the majority of U2-type introns have the sequence GU-AG at the intron termini, some introns with these terminal sequences are spliced by the U12-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron. GO:0006375|GO:0006374 biological_process owl:Class GO:1903657 biolink:NamedThing negative regulation of type IV pilus biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of type IV pilus biogenesis. tmpzr1t_l9r_go_relaxed.owl downregulation of type IV fimbria assembly|inhibition of TFP biogenesis|downregulation of type IV fimbrium assembly|negative regulation of TFP biogenesis|down regulation of type IV fimbrial assembly|downregulation of TFP biogenesis|negative regulation of type IV fimbria biogenesis|inhibition of type IV pilus biosynthesis|inhibition of type IV fimbrial biogenesis|inhibition of type IV fimbria biogenesis|down-regulation of type IV fimbriae biogenesis|negative regulation of type IV fimbrium assembly|negative regulation of type IV fimbria assembly|down-regulation of type IV fimbria biogenesis|negative regulation of type IV fimbrium biogenesis|down regulation of type IV fimbriae biogenesis|down-regulation of type IV fimbrium biogenesis|downregulation of type IV pilus biosynthesis|negative regulation of type IV fimbrial assembly|negative regulation of type IV fimbriae assembly|down-regulation of type IV pilus biogenesis|negative regulation of type IV pilus biosynthesis|downregulation of type IV fimbria biogenesis|inhibition of type IV fimbria assembly|inhibition of type IV pilus biogenesis|down regulation of type IV pilus biosynthesis|down-regulation of TFP biogenesis|down regulation of TFP biogenesis|down regulation of type IV fimbrial biogenesis|down regulation of type IV fimbrium assembly|downregulation of type IV fimbrial assembly|down-regulation of type IV fimbrial biogenesis|down regulation of type IV fimbriae assembly|inhibition of type 4 pilus biogenesis|downregulation of type IV fimbriae biogenesis|down regulation of type IV fimbria assembly|negative regulation of type IV fimbriae biogenesis|down-regulation of type IV fimbrial assembly|down regulation of type 4 pilus biogenesis|downregulation of type IV fimbrial biogenesis|downregulation of type IV pilus biogenesis|down regulation of type IV fimbria biogenesis|inhibition of type IV fimbrial assembly|downregulation of type IV fimbrium biogenesis|inhibition of type IV fimbriae assembly|down-regulation of type IV fimbrium assembly|downregulation of type 4 pilus biogenesis|negative regulation of type IV fimbrial biogenesis|inhibition of type IV fimbriae biogenesis|down-regulation of type IV pilus biosynthesis|inhibition of type IV fimbrium assembly|down-regulation of type IV fimbriae assembly|negative regulation of type 4 pilus biogenesis|inhibition of type IV fimbrium biogenesis|down-regulation of type IV fimbria assembly|down regulation of type IV fimbrium biogenesis|down regulation of type IV pilus biogenesis|downregulation of type IV fimbriae assembly|down-regulation of type 4 pilus biogenesis jl 2014-11-25T12:03:24Z biological_process owl:Class GO:2001306 biolink:NamedThing lipoxin B4 biosynthetic process The chemical reactions and pathways resulting in the formation of lipoxin B4. Lipoxin B4 is a C20 hydroxy fatty acid having (5S)-, (14R)- and (15S)-hydroxy groups as well as (6E)- (8Z)-, (10E)- and (12E)-double bonds. tmpzr1t_l9r_go_relaxed.owl lipoxin B4 biosynthesis|LXB4 formation|LXB4 biosynthesis|lipoxin B4 synthesis|lipoxin B4 anabolism|LXB4 anabolism|LXB4 synthesis|LXB4 biosynthetic process|lipoxin B4 formation bf 2012-03-07T11:15:04Z biological_process owl:Class GO:0016411 biolink:NamedThing acylglycerol O-acyltransferase activity Catalysis of the transfer of an acyl group to an oxygen atom on the acylglycerol molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1482647|Reactome:R-HSA-1482654 molecular_function owl:Class GO:1904279 biolink:NamedThing regulation of transcription by RNA polymerase V Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase V. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase V promoter|regulation of transcription from RNA pol V promoter tb 2015-06-03T22:01:47Z biological_process owl:Class GO:0090428 biolink:NamedThing perianth development The process whose specific outcome is the progression of the perianth over time, from its formation to the mature structure. The perianth is a collective phyllome structure composed of two or more petals, sepals, or tepals. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-08T06:02:15Z biological_process owl:Class GO:0007321 biolink:NamedThing sperm displacement The physical displacement of sperm stored from previous mating encounters. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070714 biolink:NamedThing RNA guanosine-uridine insertion The modification of an RNA molecule by insertion of an guanosine-uridine insertion dinucleotide. tmpzr1t_l9r_go_relaxed.owl RNA GU insertion mah 2009-06-08T05:33:20Z biological_process owl:Class GO:0070707 biolink:NamedThing RNA dinucleotide insertion The modification of an RNA molecule by insertion of a dinucleotide. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-08T04:50:59Z biological_process owl:Class GO:0003273 biolink:NamedThing cell migration involved in endocardial cushion formation The orderly movement of a cell from one site to another that will contribute to the formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T09:08:44Z biological_process owl:Class GO:0045831 biolink:NamedThing negative regulation of light-activated channel activity Any process that stops, prevents, or reduces the frequency, rate or extent of light-activated channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of light-activated channel activity|downregulation of light-activated channel activity|down regulation of light-activated channel activity|inhibition of light-activated channel activity biological_process owl:Class GO:1901167 biolink:NamedThing 3-chlorocatechol metabolic process The chemical reactions and pathways involving 3-chlorocatechol. tmpzr1t_l9r_go_relaxed.owl 3-chlorocatechol metabolism yaf 2012-07-19T09:33:16Z biological_process owl:Class GO:0048526 biolink:NamedThing imaginal disc-derived wing expansion The process of expanding or inflating the folded imaginal disc-derived pupal wing, and the adhering of the dorsal and ventral surfaces, to form the mature adult wing. tmpzr1t_l9r_go_relaxed.owl wing inflation|wing expansion biological_process owl:Class GO:0048359 biolink:NamedThing mucilage metabolic process involved in seed coat development The chemical reactions and pathways involving mucilage that occur as part of seed coat development; mucilage is normally synthesized during seed coat development. tmpzr1t_l9r_go_relaxed.owl mucilage metabolic process during seed coat development|mucilage metabolism during seed coat development biological_process owl:Class GO:0150175 biolink:NamedThing regulation of phosphatidylethanolamine metabolic process Any process that modulates the frequency, rate or extent of phosphatidylethanolamine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:04:12Z biological_process owl:Class GO:1900726 biolink:NamedThing osmoregulated periplasmic glucan catabolic process The chemical reactions and pathways resulting in the breakdown of osmoregulated periplasmic glucan. tmpzr1t_l9r_go_relaxed.owl osmoregulated periplasmic glucan degradation|osmoregulated periplasmic glucan breakdown|osmoregulated periplasmic glucan catabolism jl 2012-05-24T03:18:54Z biological_process owl:Class GO:0005130 biolink:NamedThing granulocyte colony-stimulating factor receptor binding Binding to a granulocyte colony-stimulating factor receptor. tmpzr1t_l9r_go_relaxed.owl granulocyte colony stimulating factor receptor binding|GC-SF receptor ligand|granulocyte colony-stimulating factor|granulocyte colony-stimulating factor receptor ligand|G-CSF receptor ligand molecular_function owl:Class GO:0035119 biolink:NamedThing embryonic pelvic fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the pelvic fin are generated and organized. The pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035139 biolink:NamedThing pelvic fin morphogenesis The process in which the anatomical structures of the pelvic fin are generated and organized. Pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070495 biolink:NamedThing negative regulation of thrombin-activated receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of thrombin-activated receptor protein signaling pathway activity. A thrombin receptor signaling pathway is the series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl negative regulation of thrombin receptor signaling pathway|negative regulation of thrombin receptor signalling pathway biological_process owl:Class GO:1905311 biolink:NamedThing negative regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of cardiac neural crest cell migration involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of cardiac neural crest cell migration involved in outflow tract morphogenesis|down regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis|down-regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis|downregulation of cardiac neural crest cell migration involved in outflow tract morphogenesis rl 2016-07-11T17:34:35Z biological_process owl:Class GO:0034849 biolink:NamedThing 2-naphthoate CoA-transferase activity Catalysis of the reaction: 2-naphthoyl-CoA + OH- = 2-naphthoate + CoASH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1262 molecular_function owl:Class GO:0046020 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter by pheromones Any process involving pheromones that stops, prevents or reduces the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription from RNA polymerase II promoter by pheromones|negative regulation of transcription from Pol II promoter by pheromones|down-regulation of transcription from RNA polymerase II promoter by pheromones|inhibition of transcription from RNA polymerase II promoter by pheromones|down regulation of transcription from RNA polymerase II promoter by pheromones biological_process owl:Class GO:1901344 biolink:NamedThing response to leptomycin B Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leptomycin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-07T13:20:47Z biological_process owl:Class GO:0001208 biolink:NamedThing histone H2A-H2B dimer displacement The removal of a H2A-H2B histone dimer from a nucleosome within chromatin. tmpzr1t_l9r_go_relaxed.owl krc 2012-03-27T11:03:40Z biological_process owl:Class GO:0001207 biolink:NamedThing histone displacement The removal of histones, including histone dimers, from nucleosomes within chromatin. tmpzr1t_l9r_go_relaxed.owl krc 2012-03-27T10:56:56Z biological_process owl:Class GO:0099001 biolink:NamedThing viral genome ejection through host cell envelope, long flexible tail mechanism Ejection by a non-enveloped prokaryotic virus of its genome into the host cytoplasm via a long, flexible tail ejection system consisting a baseplate, a central tube and a terminator complex which attaches the tail to the phage capsid. Upon binding to the host cell surface, the baseplate changes its conformation and triggers genome ejection into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral long flexible tail ejection system VZ:3952 biological_process owl:Class GO:1902527 biolink:NamedThing positive regulation of protein monoubiquitination Any process that activates or increases the frequency, rate or extent of protein monoubiquitination. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein monoubiquitinylation|up regulation of protein monoubiquitination|up regulation of protein monoubiquitinylation|activation of protein monoubiquitination|up-regulation of protein monoubiquitylation|upregulation of protein monoubiquitination|positive regulation of protein monoubiquitinylation|upregulation of protein monoubiquitinylation|activation of protein monoubiquitylation|positive regulation of protein monoubiquitylation|up-regulation of protein monoubiquitination|up regulation of protein monoubiquitylation|upregulation of protein monoubiquitylation|activation of protein monoubiquitinylation An example is BIRC2 (UniProt ID Q13490) in PMID:21931591. ppm 2013-12-02T09:59:21Z biological_process owl:Class GO:1902525 biolink:NamedThing regulation of protein monoubiquitination Any process that modulates the frequency, rate or extent of protein monoubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of protein monoubiquitylation|regulation of protein monoubiquitinylation ppm 2013-12-02T09:58:56Z biological_process owl:Class GO:0008198 biolink:NamedThing ferrous iron binding Binding to a ferrous iron ion, Fe(II). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900936 biolink:NamedThing negative regulation of nonadec-1-ene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of nonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of nonadec-1-ene formation|downregulation of nonadec-1-ene synthesis|inhibition of nonadec-1-ene biosynthesis|negative regulation of nonadec-1-ene anabolism|down-regulation of nonadec-1-ene anabolism|negative regulation of nonadec-1-ene synthesis|down-regulation of nonadec-1-ene synthesis|down regulation of nonadec-1-ene synthesis|down-regulation of nonadec-1-ene biosynthesis|down regulation of nonadec-1-ene biosynthesis|inhibition of nonadec-1-ene anabolism|downregulation of nonadec-1-ene anabolism|down regulation of nonadec-1-ene biosynthetic process|down-regulation of nonadec-1-ene biosynthetic process|inhibition of nonadec-1-ene biosynthetic process|downregulation of nonadec-1-ene formation|negative regulation of nonadec-1-ene biosynthesis|down regulation of nonadec-1-ene formation|down regulation of nonadec-1-ene anabolism|down-regulation of nonadec-1-ene formation|downregulation of nonadec-1-ene biosynthetic process|downregulation of nonadec-1-ene biosynthesis|negative regulation of nonadec-1-ene formation|inhibition of nonadec-1-ene synthesis tt 2012-06-14T03:13:56Z biological_process owl:Class GO:0099093 biolink:NamedThing calcium export from the mitochondrion A process in which a calcium ion (Ca2+) is transported out of the mitochondrial matrix, and into the cytosol. tmpzr1t_l9r_go_relaxed.owl mitochondrial calcium release|calcium ion transmembrane export from mitochondrion|mitochondrial calcium ion export biological_process owl:Class GO:1901660 biolink:NamedThing calcium ion export The directed movement of calcium ion out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-20T14:33:07Z biological_process owl:Class GO:1902855 biolink:NamedThing regulation of non-motile cilium assembly Any process that modulates the frequency, rate or extent of non-motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl regulation of nonmotile primary cilium assembly|regulation of sensory cilium biogenesis|regulation of nonmotile primary cilia assembly|regulation of sensory cilium assembly|regulation of immotile primary cilium assembly kmv 2014-04-02T15:41:57Z biological_process owl:Class GO:1902873 biolink:NamedThing negative regulation of horizontal cell localization Any process that stops, prevents or reduces the frequency, rate or extent of horizontal cell localization. tmpzr1t_l9r_go_relaxed.owl down regulation of horizontal cell localization|inhibition of horizontal cell localisation|inhibition of laminar positioning of retinal horizontal cell|inhibition of horizontal cell localization|downregulation of horizontal cell positioning|negative regulation of retinal horizontal cell positioning|downregulation of horizontal cell localization|down-regulation of laminar positioning of retinal horizontal cell|inhibition of horizontal cell positioning|downregulation of laminar positioning of retinal horizontal cell|negative regulation of horizontal cell localisation|negative regulation of laminar positioning of retinal horizontal cell|down-regulation of horizontal cell localisation|negative regulation of horizontal cell positioning|downregulation of horizontal cell localisation|down regulation of laminar positioning of retinal horizontal cell|down-regulation of horizontal cell localization|downregulation of retinal horizontal cell positioning|inhibition of retinal horizontal cell positioning|down regulation of horizontal cell localisation|down-regulation of retinal horizontal cell positioning|down regulation of retinal horizontal cell positioning|down regulation of horizontal cell positioning|down-regulation of horizontal cell positioning mr 2014-04-03T15:25:03Z biological_process owl:Class GO:0003096 biolink:NamedThing renal sodium ion transport The directed movement of sodium ions (Na+) by the renal system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039585 biolink:NamedThing PKR-mediated signaling A series of reactions in which a signal is passed on to downstream proteins within the cell via PKR (also known as EIF2AK3), an intracellular protein kinase that is activated by stress signals or upon binding to double-stranded RNA (dsRNA), followed by autophosphorylation. PKR plays a role in the antiviral response, phosphorylating proteins such as the translation initiation factor eIF2 to inhibit protein synthesis during viral infection. Begins with activation of PKR activity, and ends with regulation of a downstream cellular process, e.g. regulation of transcription or inhibition of translation. tmpzr1t_l9r_go_relaxed.owl EIF2AK3 signal transduction|PKR signal transduction|PKR signaling pathway|signaling through PKR|EIF2AK3/PERK signaling bf 2012-05-02T04:15:10Z biological_process owl:Class GO:0046115 biolink:NamedThing guanosine catabolic process The chemical reactions and pathways resulting in the breakdown of guanine, guanine riboside, a nucleoside with a wide species distribution. tmpzr1t_l9r_go_relaxed.owl guanosine breakdown|guanosine degradation|guanosine catabolism|guanosine phosphorolysis GO:0006160 biological_process owl:Class GO:2000275 biolink:NamedThing regulation of oxidative phosphorylation uncoupler activity Any process that modulates the frequency, rate or extent of oxidative phosphorylation uncoupler activity. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial uncoupling protein activity|regulation of uncoupling protein activity mah 2010-12-07T12:14:54Z biological_process owl:Class GO:0099108 biolink:NamedThing potassium channel activator activity involved in G protein-coupled receptor signaling pathway Activation potassium ion channel activity via direct interaction with a potassium ion channel during G protein-coupled receptor signaling. tmpzr1t_l9r_go_relaxed.owl potassium channel activator activity involved in G-protein coupled receptor signaling pathway Examples include G-protein beta-gamma complexes that bind to and activate potassium channels. molecular_function owl:Class GO:1901850 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin metabolic process The chemical reactions and pathways involving 7,8-didemethyl-8-hydroxy-5-deazariboflavin. tmpzr1t_l9r_go_relaxed.owl coenzyme F0 metabolism|7,8-didemethyl-8-hydroxy-5-deazariboflavin metabolism yaf 2013-01-28T11:38:32Z biological_process owl:Class GO:2000670 biolink:NamedThing positive regulation of dendritic cell apoptotic process Any process that activates or increases the frequency, rate or extent of dendritic cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of dendritic cell apoptosis pr 2011-05-09T07:34:26Z biological_process owl:Class GO:1903425 biolink:NamedThing fluoride transmembrane transporter activity Enables the transfer of fluoride from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl mcc 2014-09-09T21:27:55Z molecular_function owl:Class GO:0050318 biolink:NamedThing tannase activity Catalysis of the reaction: digallate + H(2)O = 2 gallate + H(+). tmpzr1t_l9r_go_relaxed.owl tannase S|tannin acylhydrolase activity|tannin acetylhydrolase activity KEGG_REACTION:R00053|MetaCyc:TANNASE-RXN|EC:3.1.1.20|RHEA:16365 molecular_function owl:Class GO:0033885 biolink:NamedThing 10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity Catalysis of the reaction: (9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate + H(2)O = (9S,10S)-9,10-dihydroxyoctadecanoate + phosphate. tmpzr1t_l9r_go_relaxed.owl lipid-phosphate phosphatase activity|dihydroxy fatty acid phosphatase activity|sEH|soluble epoxide hydrolase activity|(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity|hydroxy lipid phosphatase activity|(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate phosphohydrolase activity|hydroxy fatty acid phosphatase activity RHEA:16537|EC:3.1.3.76|MetaCyc:3.1.3.76-RXN|KEGG_REACTION:R07582 molecular_function owl:Class GO:0001405 biolink:NamedThing PAM complex, Tim23 associated import motor Protein complex located on the matrix side of the mitochondrial inner membrane and associated with the TIM23 mitochondrial import inner membrane translocase complex (GO:0005744); ATPase motor activity to drive import of proteins into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl mitochondrial import motor|presequence translocase-associated import motor|PAM complex|pre-sequence translocase-associated import motor cellular_component owl:Class GO:0005664 biolink:NamedThing nuclear origin of replication recognition complex A multisubunit complex that is located at the replication origins of a chromosome in the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear ORC|eukaryotic ORC cellular_component owl:Class GO:0000808 biolink:NamedThing origin recognition complex A multisubunit complex that is located at the replication origins of a chromosome. tmpzr1t_l9r_go_relaxed.owl origin of replication recognition complex|ORC Wikipedia:Origin_recognition_complex cellular_component owl:Class GO:0052042 biolink:NamedThing positive regulation by symbiont of host programmed cell death Any process in which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pathogenesis|upregulation by symbiont of host programmed cell death|induction by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction|activation by symbiont of host programmed cell death|induction by organism of programmed cell death in other organism involved in symbiotic interaction|stimulation by symbiont of host programmed cell death|induction by organism of programmed cell death in other organism during symbiotic interaction|activation by organism of non-apoptotic programmed cell death in other organism|enhancement of host programmed cell death|induction of non-apoptotic programmed cell death by other organism|activation by organism of programmed cell death in other organism during symbiotic interaction|positive regulation by symbiont of host non-apoptotic programmed cell death|enhancement of host programmed cell death by organism|induction by symbiont of host programmed cell death|activation by organism of host programmed cell death GO:0052044|GO:0012504|GO:0052397|GO:0052045|GO:0052153|GO:0052400 biological_process owl:Class GO:0015483 biolink:NamedThing long-chain fatty acid transporting porin activity Enables the transfer of long-chain fatty acids from one side of a membrane to the other. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. This transporter is a porin and so enables the energy independent passage of substances, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl TC:1.B.9.1.1 molecular_function owl:Class GO:1905533 biolink:NamedThing negative regulation of leucine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of leucine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of leucine import into cell|inhibition of L-leucine import into cell|downregulation of leucine import into cell|down regulation of leucine import into cell|negative regulation of leucine import into cell|negative regulation of L-leucine import into cell|down-regulation of leucine import into cell|down regulation of L-leucine import into cell|downregulation of L-leucine import into cell|down-regulation of L-leucine import into cell vw 2016-10-05T21:08:01Z GO:1903129 biological_process owl:Class GO:1905532 biolink:NamedThing regulation of leucine import across plasma membrane Any process that modulates the frequency, rate or extent of leucine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl regulation of leucine import into cell|regulation of L-leucine import into cell vw 2014-06-25T13:09:51Z GO:1903128 biological_process owl:Class GO:0007185 biolink:NamedThing transmembrane receptor protein tyrosine phosphatase signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses protein tyrosine phosphatase activity, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine phosphatase signalling pathway biological_process owl:Class GO:0007167 biolink:NamedThing enzyme linked receptor protein signaling pathway Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl enzyme linked receptor protein signalling pathway biological_process owl:Class GO:0033151 biolink:NamedThing V(D)J recombination The process in which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). tmpzr1t_l9r_go_relaxed.owl V-J joining|V(D)J joining|V-J recombination|V-D-J recombination|V-D-J joining Wikipedia:V(D)J_recombination biological_process owl:Class GO:0030186 biolink:NamedThing melatonin metabolic process The chemical reactions and pathways involving melatonin (N-acetyl-5-methoxytryptamine). tmpzr1t_l9r_go_relaxed.owl melatonin metabolism biological_process owl:Class GO:0000947 biolink:NamedThing amino acid catabolic process to alcohol via Ehrlich pathway The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061115 biolink:NamedThing lung proximal/distal axis specification The establishment, maintenance and elaboration of the proximal/distal axis of the lung. The proximal/distal axis of the lung is defined by a line that runs from the trachea to the alveoli. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-10T12:30:40Z biological_process owl:Class GO:0008071 biolink:NamedThing maternal determination of dorsal/ventral axis, ovarian follicular epithelium, soma encoded Polarization of the ovarian follicle cells along the dorsal-ventral axis by a gene product encoded by somatic cells. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl maternal determination of dorsoventral axis, ovarian follicular epithelium, soma encoded|maternal determination of dorsal-ventral axis, ovarian follicular epithelium, soma encoded|maternal determination of dorsal/ventral axis, follicular epithelium, soma encoded biological_process owl:Class GO:1902240 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator. tmpzr1t_l9r_go_relaxed.owl upregulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|up-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|activation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator|up regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator pr 2013-06-19T14:00:44Z biological_process owl:Class GO:1902220 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl up regulation of intrinsic apoptotic signaling pathway in response to osmotic stress|upregulation of intrinsic apoptotic signaling pathway in response to osmotic stress|activation of intrinsic apoptotic signaling pathway in response to osmotic stress|up-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress rl 2013-06-13T10:19:18Z biological_process owl:Class GO:1900015 biolink:NamedThing regulation of cytokine production involved in inflammatory response Any process that modulates the frequency, rate or extent of cytokine production involved in inflammatory response. tmpzr1t_l9r_go_relaxed.owl regulation of cytokine production involved in acute inflammatory response rph 2012-01-11T09:34:27Z biological_process owl:Class GO:0048556 biolink:NamedThing microsporocyte nucleus The nucleus of the microsporocyte. The microsporocyte is a diploid cell in which meiosis will occur, resulting in four microspores. A microspore is a spore that, in vascular plants, gives rise to a male gametophyte. tmpzr1t_l9r_go_relaxed.owl microspore mother cell nucleus|pollen mother cell nucleus GO:0043074 cellular_component owl:Class GO:0060178 biolink:NamedThing regulation of exocyst localization Any process that modulates the localization of exocysts. An exocyst is a protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. tmpzr1t_l9r_go_relaxed.owl regulation of exocyst localisation biological_process owl:Class GO:0016897 biolink:NamedThing exoribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 3' phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl EC:3.1.14.- molecular_function owl:Class GO:0016797 biolink:NamedThing exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end to yield 3' phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl EC:3.1.16.- Note that this activity can catalyze cleavage of DNA or RNA. molecular_function owl:Class GO:0102841 biolink:NamedThing 1-18:1-2-16:2-monogalactosyldiacylglycerol synthase activity Catalysis of the reaction: 1-18:1-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:1-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.23|MetaCyc:RXN-8302 molecular_function owl:Class GO:0018273 biolink:NamedThing protein-chromophore linkage via peptidyl-N6-retinal-L-lysine The modification of peptidyl-lysine to form N6-retinal-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0120 biological_process owl:Class GO:0009260 biolink:NamedThing ribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl ribonucleotide biosynthesis|ribonucleotide anabolism|ribonucleotide formation|ribonucleotide synthesis biological_process owl:Class GO:0038110 biolink:NamedThing interleukin-2-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-2 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-2-mediated signalling pathway|IL-2-mediated signaling pathway bf 2012-03-22T10:18:29Z biological_process owl:Class GO:0071197 biolink:NamedThing Kv4.2-Kv4.3 channel complex A voltage-gated potassium channel complex that contains the Kv alpha subunits 4.2 and 4.3. tmpzr1t_l9r_go_relaxed.owl CORUM:609 mah 2009-11-23T05:00:33Z cellular_component owl:Class GO:2000451 biolink:NamedThing positive regulation of CD8-positive, alpha-beta T cell extravasation Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:42:14Z biological_process owl:Class GO:0036319 biolink:NamedThing mating-type M-factor pheromone receptor activity Combining with the mating-type peptide pheromone M-factor and transmitting the signal across the membrane to initiate a change in cell activity. M-factor is a nine-membered oligopeptide that consists of tyrosyl, threonyl, prolyl, lysyl, valyl, prolyl, tyrosyl, methionyl and methyl S-farnesylcysteinate residues joined in sequence, and is a peptide pheromone released by Schizosaccharomyces pombe cells of the cellular mating type Minus. tmpzr1t_l9r_go_relaxed.owl M-factor receptor activity|M-factor mating pheromone receptor activity bf 2012-08-30T16:51:12Z molecular_function owl:Class GO:0048171 biolink:NamedThing negative regulation of long-term neuronal synaptic plasticity A process that decreases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers. tmpzr1t_l9r_go_relaxed.owl down regulation of long-term neuronal synaptic plasticity|inhibition of long-term neuronal synaptic plasticity|down-regulation of long-term neuronal synaptic plasticity|downregulation of long-term neuronal synaptic plasticity Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0106115 biolink:NamedThing negative regulation of mitotic cohesin dsDNA (leading strand) loading Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cohesin dsDNA (leading strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:50:12Z biological_process owl:Class GO:0070825 biolink:NamedThing micropyle An external encapsulating structure part of the chorion. A single cone-shaped specialization that forms an opening in the egg chorion that allows sperm entry into the egg prior to fertilization. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-21T05:33:09Z cellular_component owl:Class GO:0009028 biolink:NamedThing tartronate-semialdehyde synthase activity Catalysis of the reaction: 2 glyoxylate + H(+) = 2-hydroxy-3-oxopropanoate + CO(2). tmpzr1t_l9r_go_relaxed.owl glyoxylate carboligase activity|glyoxylate carbo-ligase activity|tartronic semialdehyde carboxylase activity|glyoxylate carboxy-lyase (dimerizing; tartronate-semialdehyde-forming)|tartronate semialdehyde carboxylase activity|glyoxylate carboxy-lyase (dimerizing)|glyoxalate carboligase activity|glyoxylic carbo-ligase activity|hydroxymalonic semialdehyde carboxylase activity EC:4.1.1.47|RHEA:10136|KEGG_REACTION:R00013|MetaCyc:GLYOCARBOLIG-RXN molecular_function owl:Class GO:2000107 biolink:NamedThing negative regulation of leukocyte apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of leukocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of leukocyte apoptosis mah 2010-09-15T01:42:09Z biological_process owl:Class GO:0042118 biolink:NamedThing endothelial cell activation The change in morphology and behavior of an endothelial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005115 biolink:NamedThing receptor tyrosine kinase-like orphan receptor binding Binding to a receptor tyrosine kinase-like orphan receptor (Ror). tmpzr1t_l9r_go_relaxed.owl receptor tyrosine kinase-like orphan receptor ligand|Ror ligand|Ror binding molecular_function owl:Class GO:0017161 biolink:NamedThing inositol-1,3,4-trisphosphate 4-phosphatase activity Catalysis of the reaction: D-myo-inositol 1,3,4-trisphosphate + H2O = myo-inositol 1,3-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:43392|Reactome:R-HSA-1855180 molecular_function owl:Class GO:0004789 biolink:NamedThing thiamine-phosphate diphosphorylase activity Catalysis of the reaction: 4-amino-2-methyl-5-diphosphomethylpyrimidine + 4-methyl-5-(2-phosphoethyl)-thiazole + H(+) = diphosphate + thiamine phosphate. tmpzr1t_l9r_go_relaxed.owl thiamine phosphate pyrophosphorylase activity|thiamine-phosphate pyrophosphorylase activity|thiamine-phosphate synthase activity|thiamin-phosphate diphosphorylase activity|TMP diphosphorylase activity|thiamine monophosphate pyrophosphorylase activity|thiamin-phosphate pyrophosphorylase activity|TMP pyrophosphorylase activity|TMP-PPase activity|2-methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate:4-methyl-5-(2-phosphoethyl)thiazole 2-methyl-4-aminopyrimidine-5-methenyltransferase activity RHEA:22328|KEGG_REACTION:R03223|MetaCyc:THI-P-SYN-RXN|EC:2.5.1.3 molecular_function owl:Class GO:0034375 biolink:NamedThing high-density lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within a high-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL. tmpzr1t_l9r_go_relaxed.owl HDL remodeling biological_process owl:Class GO:1990747 biolink:NamedThing pancreatic trypsinogen secretion The regulated release of trypsinogen from the cells of the exocrine pancreas. tmpzr1t_l9r_go_relaxed.owl pancreatic trypsinogen release sl 2015-05-15T17:41:25Z biological_process owl:Class GO:0099620 biolink:NamedThing UDP-4-amino-4-deoxy-L-arabinose aminotransferase Catalysis of the reaction: UDP-4-amino-4-deoxy-beta-L-arabinopyranose + 2-oxoglutarate = UDP-beta-L-threo-pentapyranos-4-ulose + L-glutamate. tmpzr1t_l9r_go_relaxed.owl UDP-L-Ara4N transaminase|UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase|UDP-Ara4O aminotransferase|UDP-4-amino-4-deoxy-L-arabinose---oxoglutarate aminotransferase|UDP-4-amino-4-deoxy-beta-L-arabinose:2-oxoglutarate aminotransferase EC:2.6.1.87|RHEA:24710 molecular_function owl:Class GO:1990343 biolink:NamedThing heterochromatin domain A region of heterochromatin that is formed dynamically under specific growth conditions by a process that requires RNAi, and is enriched in histone H3 methylated on lysine 9 (H3K9me). tmpzr1t_l9r_go_relaxed.owl HOOD An example of this type of heterochromatin is found in Schizosaccharomyces pombe, where heterochromatin domains preferentially assemble at sexual differentiation genes and retrotransposons. mah 2014-03-21T15:40:48Z cellular_component owl:Class GO:0045984 biolink:NamedThing negative regulation of pyrimidine nucleobase metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving pyrimidine nucleobases. tmpzr1t_l9r_go_relaxed.owl down-regulation of pyrimidine base metabolic process|negative regulation of pyrimidine base metabolic process|negative regulation of pyrimidine base metabolism|down regulation of pyrimidine base metabolic process|downregulation of pyrimidine base metabolic process|inhibition of pyrimidine base metabolic process biological_process owl:Class GO:1990256 biolink:NamedThing signal clustering Grouping of multiple copies of a signal at a cellular location. May promote receptor clustering and alter the signal transduction response. tmpzr1t_l9r_go_relaxed.owl ligand clustering tb 2013-12-18T01:13:59Z biological_process owl:Class GO:0099149 biolink:NamedThing regulation of postsynaptic neurotransmitter receptor internalization Any process that modulates the frequency, rate or extent of endocytosis of neurotransmitter receptor at the postsynapse. tmpzr1t_l9r_go_relaxed.owl regulation of postsynaptic neurotransmitter receptor endocytosis dos 2017-07-05T13:13:49Z biological_process owl:Class GO:0008925 biolink:NamedThing maltose O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + maltose = CoA + acetyl-maltose. tmpzr1t_l9r_go_relaxed.owl maltose transacetylase activity|acetyl-CoA:maltose O-acetyltransferase activity MetaCyc:MALTACETYLTRAN-RXN|EC:2.3.1.79|RHEA:10456 molecular_function owl:Class GO:1990167 biolink:NamedThing protein K27-linked deubiquitination A protein deubiquitination process in which a K27-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 27 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl sp 2013-08-14T11:15:24Z biological_process owl:Class GO:1900032 biolink:NamedThing regulation of trichome patterning Any process that modulates the frequency, rate or extent of trichome patterning. tmpzr1t_l9r_go_relaxed.owl regulation of trichome spacing|regulation of trichome pattern biosynthesis|regulation of trichome distribution|regulation of trichome pattern specification|regulation of trichome pattern formation tb 2012-01-13T11:10:46Z biological_process owl:Class GO:0018956 biolink:NamedThing phenanthrene catabolic process via trans-9(R),10(R)-dihydrodiolphenanthrene The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon, where trans-9(R),10(R)-dihydrodiolphenanthrene is the principal intermediate metabolite. tmpzr1t_l9r_go_relaxed.owl phenanthrene degradation via trans-9(R),10(R)-dihydrodiolphenanthrene|phenanthrene breakdown via trans-9(R),10(R)-dihydrodiolphenanthrene UM-BBD_pathwayID:pha3 biological_process owl:Class GO:0033851 biolink:NamedThing lavandulyl diphosphate synthase activity Catalysis of the reaction: 2 dimethylallyl diphosphate = diphosphate + lavandulyl diphosphate. tmpzr1t_l9r_go_relaxed.owl dimethylallyl-diphosphate:dimethylallyl-diphosphate dimethylallyltransferase (lavandulyl-diphosphate-forming) activity|FDS-5 KEGG_REACTION:R08950|MetaCyc:2.5.1.69-RXN|RHEA:21676|EC:2.5.1.69 molecular_function owl:Class GO:0018413 biolink:NamedThing peptidyl-serine O-glucuronidation The O-glucuronidation of peptidyl-serine to form peptidyl-O3-D-glucuronyl-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0291 biological_process owl:Class GO:0019176 biolink:NamedThing dihydroneopterin monophosphate phosphatase activity Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate. tmpzr1t_l9r_go_relaxed.owl dihydroneopterin monophosphate dephosphorylase activity RHEA:25306|MetaCyc:DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN molecular_function owl:Class GO:0047313 biolink:NamedThing aromatic-amino-acid-glyoxylate transaminase activity Catalysis of the reaction: glyoxylate + an aromatic amino acid = L-glycine + an aromatic oxo acid. tmpzr1t_l9r_go_relaxed.owl aromatic-amino-acid:glyoxylate aminotransferase activity|aromatic-amino-acid-glyoxylate aminotransferase activity|aromatic-amino-acid--glyoxylate aminotransferase activity RHEA:10900|EC:2.6.1.60|MetaCyc:2.6.1.60-RXN molecular_function owl:Class GO:0106310 biolink:NamedThing protein serine kinase activity Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20114 RHEA:17989 Note that this term is to annotate proteins the specifically phosphorylate a serine residue on a protein. An example is human PIKFYVE (UniProt:Q9Y2I7). For dual specificity protein kinases, use 'protein serine/threonine kinase activity' ; GO:0004712. hjd 2020-09-22T20:01:17Z molecular_function owl:Class GO:0050596 biolink:NamedThing vinorine hydroxylase activity Catalysis of the reaction: H(+) + NADPH + O(2) + vinorine = H(2)O + NADP(+) + vomilenine. tmpzr1t_l9r_go_relaxed.owl vinorine,NADPH:oxygen oxidoreductase (21alpha-hydroxylating) EC:1.14.14.104|RHEA:17257|KEGG_REACTION:R05877|MetaCyc:1.14.13.75-RXN molecular_function owl:Class GO:0051230 biolink:NamedThing spindle disassembly The controlled breakdown of the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. tmpzr1t_l9r_go_relaxed.owl spindle breakdown|spindle catabolism|spindle degradation biological_process owl:Class GO:0006781 biolink:NamedThing succinyl-CoA pathway The chemical reactions that utilize succinyl-CoA in the synthesis of protoporphyrin IX. tmpzr1t_l9r_go_relaxed.owl biosynthesis of protoporphyrin IX via succinyl CoA|biosynthetic process of protoporphyrin IX via succinyl CoA|succinyl CoA pathway|biosynthesis of protoporphyrin IX via succinyl-CoA|biosynthetic process of protoporphyrin IX via succinyl-CoA biological_process owl:Class GO:0034434 biolink:NamedThing sterol esterification A lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and a sterol molecule (e.g. cholesterol). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034433 biolink:NamedThing steroid esterification A lipid modification process in which a steroid ester is formed by the combination of a carboxylic acid (often a fatty acid) and a steroid molecule (e.g. cholesterol). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901120 biolink:NamedThing tobramycin catabolic process The chemical reactions and pathways resulting in the breakdown of tobramycin. tmpzr1t_l9r_go_relaxed.owl tobramycin breakdown|tobramycin catabolism|tobramycin degradation yaf 2012-07-11T03:15:43Z biological_process owl:Class GO:0035692 biolink:NamedThing macrophage migration inhibitory factor receptor complex A protein complex that binds macrophage migration inhibitory factor. Comprises CD74 and CD44 cell surface proteins. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-25T11:33:15Z cellular_component owl:Class GO:1902526 biolink:NamedThing negative regulation of protein monoubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein monoubiquitination. tmpzr1t_l9r_go_relaxed.owl down regulation of protein monoubiquitination|down-regulation of protein monoubiquitinylation|down-regulation of protein monoubiquitination|down-regulation of protein monoubiquitylation|negative regulation of protein monoubiquitinylation|down regulation of protein monoubiquitinylation|down regulation of protein monoubiquitylation|downregulation of protein monoubiquitinylation|downregulation of protein monoubiquitination|inhibition of protein monoubiquitination|downregulation of protein monoubiquitylation|inhibition of protein monoubiquitinylation|negative regulation of protein monoubiquitylation|inhibition of protein monoubiquitylation ppm 2013-12-02T09:59:05Z biological_process owl:Class GO:0001172 biolink:NamedThing transcription, RNA-templated The cellular synthesis of RNA on a template of RNA. tmpzr1t_l9r_go_relaxed.owl transcription, RNA-dependent krc 2011-03-14T03:54:46Z biological_process owl:Class GO:0047664 biolink:NamedThing aminoimidazolase activity Catalysis of the reaction:4-aminoimidazole + H20 = imidazol-4-one + NH(3). tmpzr1t_l9r_go_relaxed.owl 4-aminoimidazole aminohydrolase activity|4-aminoimidazole hydrolase activity EC:3.5.4.8|RHEA:22348|MetaCyc:R13-RXN molecular_function owl:Class GO:0030446 biolink:NamedThing hyphal cell wall The cell wall surrounding a fungal hypha. tmpzr1t_l9r_go_relaxed.owl See also the Fungal Anatomy Ontology term 'hypha ; FAO:0001001'. cellular_component owl:Class GO:0031620 biolink:NamedThing regulation of fever generation Any process that modulates the rate or extent of fever generation. tmpzr1t_l9r_go_relaxed.owl regulation of pyrexia biological_process owl:Class GO:1902642 biolink:NamedThing negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation|downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown|down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process|inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism di 2014-01-21T17:54:23Z biological_process owl:Class GO:0045454 biolink:NamedThing cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell. tmpzr1t_l9r_go_relaxed.owl regulation of cell redox homeostasis|regulation of redox homeostasis Wikipedia:Redox GO:0030503|GO:0045868|GO:0045867 biological_process owl:Class GO:0015556 biolink:NamedThing C4-dicarboxylate transmembrane transporter activity Enables the transfer of C4-dicarboxylate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000037 biolink:NamedThing regulation of stomatal complex patterning Any process that modulates the frequency, rate or extent of stomatal complex patterning. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:35:47Z biological_process owl:Class GO:0070114 biolink:NamedThing organellar chromatophore outer membrane The outer, i.e. cytoplasm-facing, of the two lipid bilayers surrounding an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore outer membrane cellular_component owl:Class GO:0010572 biolink:NamedThing positive regulation of platelet activation Any process that increases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902702 biolink:NamedThing hexose catabolic process to propan-2-ol The chemical reactions and pathways resulting in the breakdown of hexose to propan-2-ol. tmpzr1t_l9r_go_relaxed.owl hexose catabolic process to isopropyl alcohol|hexose breakdown to propan-2-ol|hexose catabolism to propan-2-ol|hexose degradation to propan-2-ol|solventogenesis|hexose catabolic process to isopropanol tb 2014-02-19T18:42:54Z GO:1990283 biological_process owl:Class GO:1900770 biolink:NamedThing fumitremorgin B metabolic process The chemical reactions and pathways involving fumitremorgin B. tmpzr1t_l9r_go_relaxed.owl Lanosulin metabolism|Lanosulin metabolic process|fumitremorgin B metabolism di 2012-06-04T09:25:18Z biological_process owl:Class GO:0120006 biolink:NamedThing regulation of glutamatergic neuron differentiation Any process that modulates the frequency, rate or extent of glutamatergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13107 krc 2017-03-01T16:10:27Z biological_process owl:Class GO:0043884 biolink:NamedThing CO-methylating acetyl-CoA synthase activity Catalysis of the reaction: acetyl-CoA + corrinoid protein = CO + methylcorrinoid protein + CoA. tmpzr1t_l9r_go_relaxed.owl CO-methylating acetyl-coenzyme A synthase activity|ACS|acetyl-CoA synthase activity|acetyl-CoA:corrinoid protein O-acetyltransferase activity RHEA:45212|EC:2.3.1.169|MetaCyc:ACETYLSYNCLTH-RXN molecular_function owl:Class GO:0075507 biolink:NamedThing entry of viral genome into host nucleus via docking of viral capsid to the nuclear pore complex and injection of viral genome Viral penetration into the host nucleus where the where a viral capsid docks on the cytoplasmic side of the nuclear pore complex (NPC) and ejects the viral genome through the pore into the nucleoplasm. tmpzr1t_l9r_go_relaxed.owl This mechanism is used by viruses such as Herpesvirales whose capsid is too large to enter the nuclear pore complex (NPC) pore. jl 2011-07-26T04:52:51Z biological_process owl:Class GO:0075732 biolink:NamedThing viral penetration into host nucleus The crossing by the virus of the host nuclear membrane, either as naked viral genome or for small viruses as an intact capsid. tmpzr1t_l9r_go_relaxed.owl viral import into host nucleus|viral entry into host nucleus VZ:989 jl 2009-05-01T02:43:16Z biological_process owl:Class GO:0018048 biolink:NamedThing C-terminal peptidyl-proline amidation The formation of a C-terminal peptidyl-proline amide by hydrolysis and oxidation of an interior Pro-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0095 biological_process owl:Class GO:0004906 biolink:NamedThing interferon-gamma receptor activity Combining with interferon-gamma (a type II interferon) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IFN-gamma receptor activity|type II interferon receptor activity|IFNG receptor activity molecular_function owl:Class GO:0015188 biolink:NamedThing L-isoleucine transmembrane transporter activity Enables the transfer of L-isoleucine from one side of a membrane to the other. L-isoleucine is (2R*,3R*)-2-amino-3-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl L-isoleucine transporter activity|leucine/isoleucine/valine porter activity|leucine/valine/isoleucine permease activity|isoleucine/valine:sodium symporter activity molecular_function owl:Class GO:0046565 biolink:NamedThing 3-dehydroshikimate dehydratase activity Catalysis of the reaction: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H2O. 3,4-dihydroxybenzoate is also known as protocatechuate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:DHSHIKIMATE-DEHYDRO-RXN|EC:4.2.1.118|RHEA:24848 molecular_function owl:Class GO:1990667 biolink:NamedThing PCSK9-AnxA2 complex A protein complex consisting of the serine protease PCSK9 (proprotein convertase subtilisin/kexin-9) and annexin A2 (AnxA2). tmpzr1t_l9r_go_relaxed.owl PCSK9-Annexin A2 complex|PCSK9.AnxA2 complex|PCSK9:ANXA2 complex bf 2015-03-02T10:33:09Z cellular_component owl:Class GO:0035007 biolink:NamedThing regulation of melanization defense response Any process that affects the rate, extent or location of the melanization defense response during injury or invasion. tmpzr1t_l9r_go_relaxed.owl regulation of melanization defence response biological_process owl:Class GO:1904595 biolink:NamedThing positive regulation of termination of RNA polymerase II transcription Any process that activates or increases the frequency, rate or extent of termination of RNA polymerase II transcription. tmpzr1t_l9r_go_relaxed.owl upregulation of transcription termination from Pol II promoter|up regulation of termination of RNA polymerase II transcription|positive regulation of RNA polymerase II transcription termination factor activity|up-regulation of RNA 3'-end formation by RNA polymerase II|activation of RNA polymerase II transcription termination|activation of RNA polymerase II transcription termination factor activity|positive regulation of RNA polymerase II transcription termination|upregulation of RNA polymerase II transcription termination|positive regulation of transcription termination from RNA polymerase II promoter|positive regulation of transcription termination from Pol II promoter|up-regulation of RNA polymerase II transcription termination factor activity|up regulation of RNA polymerase II transcription termination factor activity|upregulation of RNA 3'-end formation by RNA polymerase II|upregulation of transcription termination from RNA polymerase II promoter|up-regulation of transcription termination from Pol II promoter|up regulation of RNA 3'-end formation by RNA polymerase II|activation of transcription termination from RNA polymerase II promoter|up-regulation of RNA polymerase II transcription termination|positive regulation of RNA 3'-end formation by RNA polymerase II|up regulation of transcription termination from RNA polymerase II promoter|up-regulation of transcription termination from RNA polymerase II promoter|up-regulation of termination of RNA polymerase II transcription|up regulation of RNA polymerase II transcription termination|upregulation of RNA polymerase II transcription termination factor activity|activation of transcription termination from Pol II promoter|activation of termination of RNA polymerase II transcription|up regulation of transcription termination from Pol II promoter|activation of RNA 3'-end formation by RNA polymerase II|upregulation of termination of RNA polymerase II transcription al 2015-08-25T08:56:14Z biological_process owl:Class GO:0075273 biolink:NamedThing positive regulation of zygosporangium development Any process that activates, maintains or increases the frequency, rate or extent of zygosporangium development, a process in which a fruiting body called zygosporangium is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902127 biolink:NamedThing (-)-lariciresinol metabolic process The chemical reactions and pathways involving (-)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (-)-lariciresinol metabolism ms 2013-05-21T08:49:33Z biological_process owl:Class GO:0072665 biolink:NamedThing protein localization to vacuole A process in which a protein is transported to, or maintained at, a location in a vacuole. tmpzr1t_l9r_go_relaxed.owl protein localisation to vacuole mah 2011-02-14T02:55:35Z biological_process owl:Class GO:0044846 biolink:NamedThing negative regulation by symbiont of indole acetic acid levels in host Any process in which an organism reduces the indole acetic acid levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of auxin levels in host|negative regulation by symbiont of IAA levels in host jl 2014-05-13T11:08:04Z biological_process owl:Class GO:1904797 biolink:NamedThing negative regulation of core promoter binding Any process that stops, prevents or reduces the frequency, rate or extent of core promoter binding. tmpzr1t_l9r_go_relaxed.owl inhibition of core promoter binding|down regulation of core promoter binding|downregulation of core promoter binding|down-regulation of core promoter binding nc 2015-11-09T12:32:31Z biological_process owl:Class GO:0046618 biolink:NamedThing xenobiotic export The directed movement of a xenobiotic, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug export https://github.com/geneontology/go-ontology/issues/19460 biological_process owl:Class GO:0071832 biolink:NamedThing peptide pheromone export involved in regulation of conjugation The directed movement of a peptide pheromone out of a cell by a secretion or export pathway used solely for the export of peptide pheromones that contributes to the union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-09T11:06:46Z biological_process owl:Class GO:0000770 biolink:NamedThing peptide pheromone export The directed movement of a peptide pheromone out of a cell by a secretion or export pathway used solely for the export of peptide pheromones. tmpzr1t_l9r_go_relaxed.owl a-factor export GO:0007325 biological_process owl:Class GO:0015158 biolink:NamedThing raffinose transmembrane transporter activity Enables the transfer of raffinose from one side of a membrane to the other. Raffinose occurs in plants almost as commonly as sucrose and is present in cereal grains, cotton seeds, and many legumes. It is synthesized from sucrose by transfer of a galactopyranoside from myo-inositol. tmpzr1t_l9r_go_relaxed.owl raffinose permease molecular_function owl:Class GO:0043719 biolink:NamedThing 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase activity Catalysis of the reaction: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol + O2 + H+ = 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN|EC:1.14.13.- molecular_function owl:Class GO:1902080 biolink:NamedThing regulation of calcium ion import into sarcoplasmic reticulum Any process that modulates the frequency, rate or extent of calcium ion import into sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl rl 2013-04-24T16:07:50Z biological_process owl:Class GO:0034015 biolink:NamedThing L-ribulose-5-phosphate 3-epimerase activity Catalysis of the reaction: L-ribulose 5-phosphate = L-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-xylulose 5-phosphate 3-epimerase activity|UlaE|SgaU MetaCyc:LXULRU5P-RXN|RHEA:18497|EC:5.1.3.22 molecular_function owl:Class GO:1902508 biolink:NamedThing 2-iminoacetate synthase complex A protein complex which is capable of 2-iminoacetate synthase activity. tmpzr1t_l9r_go_relaxed.owl ThiH-ThiG complex bhm 2013-11-14T16:56:44Z cellular_component owl:Class GO:0071600 biolink:NamedThing otic vesicle morphogenesis The process in which the anatomical structures of the otic vesicle are generated and organized. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-04T04:07:27Z biological_process owl:Class GO:0016206 biolink:NamedThing catechol O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a catechol = S-adenosyl-L-homocysteine + a guaiacol. tmpzr1t_l9r_go_relaxed.owl catechol methyltransferase activity|S-COMT (soluble form of catechol-O-methyltransferase)|COMT II|catecholamine O-methyltransferase activity|MB-COMT (membrane-bound form of catechol-O-methyltransferase)|COMT I|S-adenosyl-L-methionine:catechol O-methyltransferase activity Reactome:R-HSA-8955010|Reactome:R-HSA-175983|MetaCyc:CATECHOL-O-METHYLTRANSFERASE-RXN|EC:2.1.1.6 molecular_function owl:Class GO:0016589 biolink:NamedThing NURF complex An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2L in mammals), a NURF301 homolog (BPTF in humans), and additional subunits, though the composition of these additional subunits varies slightly with species. NURF is involved in regulation of transcription from TRNA polymerase II promoters. tmpzr1t_l9r_go_relaxed.owl nucleosome remodeling factor complex cellular_component owl:Class GO:0052088 biolink:NamedThing symbiont defense to host-produced jasmonic acid Any process in which a symbiont modulates the frequency, rate or extent of the jasmonic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|modulation by organism of host JA-mediated defense response|stimulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|induction by organism of defense-related host jasmonic acid-mediated signal transduction pathway|positive regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|suppression by organism of host JA-mediated defense response|induction by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|upregulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|induction by organism of defense-related host SA-mediated signal transduction pathway|positive regulation by organism of defense-related host SA-mediated signal transduction pathway|modulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction|negative regulation by symbiont of host jasmonic acid-mediated defense response|up-regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|positive regulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction|modulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction|suppression by symbiont of host jasmonic acid-mediated defense response|up regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|negative regulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction|activation by organism of defense-related host jasmonic acid-mediated signal transduction pathway|modulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|down-regulation by symbiont of host jasmonic acid-mediated defense response|upregulation by organism of defense-related host jasmonic acid-mediated signal transduction pathway|activation by organism of defense-related host SA-mediated signal transduction pathway|negative regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway|upregulation by organism of defense-related host SA-mediated signal transduction pathway|negative regulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction|down regulation by symbiont of host jasmonic acid-mediated defense response|downregulation by symbiont of host jasmonic acid-mediated defense response|inhibition by symbiont of host jasmonic acid-mediated defense response https://github.com/geneontology/go-ontology/issues/18798 GO:0052082|GO:0052069|GO:0052283|GO:0052271|GO:0052267|GO:0052068|GO:0052443|GO:0052266|GO:0052073 biological_process owl:Class GO:0031895 biolink:NamedThing V1B vasopressin receptor binding Binding to a V1B vasopressin receptor. tmpzr1t_l9r_go_relaxed.owl V1B vasopressin receptor ligand molecular_function owl:Class GO:1904327 biolink:NamedThing protein localization to cytosolic proteasome complex A process in which a protein is transported to, or maintained in, a location within a cytosolic proteasome complex. tmpzr1t_l9r_go_relaxed.owl protein localisation in cytosolic proteasome complex|protein localization in cytosolic proteasome complex|protein localisation to cytosolic proteasome complex bf 2015-06-11T09:29:53Z biological_process owl:Class GO:0045641 biolink:NamedThing negative regulation of basophil differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of basophil differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of basophil differentiation|down regulation of basophil differentiation|down-regulation of basophil differentiation|inhibition of basophil differentiation biological_process owl:Class GO:0102903 biolink:NamedThing gamma-terpinene synthase activity Catalysis of the reaction: geranyl diphosphate = gamma-terpinene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:32559|MetaCyc:RXN-8547|EC:4.2.3.114 molecular_function owl:Class GO:0097558 biolink:NamedThing left ventral flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the left ventral basal body and exits the cell body proximally and dorsal to the ventral disc. tmpzr1t_l9r_go_relaxed.owl left ventral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:26:51Z cellular_component owl:Class GO:2001064 biolink:NamedThing cellooligosaccharide binding Binding to cellooligosaccharide. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T10:32:19Z molecular_function owl:Class GO:1905879 biolink:NamedThing regulation of oogenesis Any process that modulates the frequency, rate or extent of oogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of ovum development hbye 2017-01-31T09:31:05Z biological_process owl:Class GO:0051343 biolink:NamedThing positive regulation of cyclic-nucleotide phosphodiesterase activity Any process that activates or increases the frequency, rate or extent of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl positive regulation of cAMP phosphodiesterase activity|3',5'-cyclic-AMP phosphodiesterase activator|positive regulation of cyclic nucleotide phosphodiesterase activity|stimulation of cyclic nucleotide phosphodiesterase activity|positive regulation of 3',5'-cyclic-AMP phosphodiesterase activity|up regulation of cyclic nucleotide phosphodiesterase activity|phosphodiesterase activator|activation of cyclic nucleotide phosphodiesterase activity|cAMP phosphodiesterase activator|up-regulation of cyclic nucleotide phosphodiesterase activity|3',5' cyclic nucleotide phosphodiesterase activator|positive regulation of 3',5' cyclic nucleotide phosphodiesterase activity|positive regulation of cGMP phosphodiesterase activity|upregulation of cyclic nucleotide phosphodiesterase activity biological_process owl:Class GO:0003294 biolink:NamedThing atrial ventricular junction remodeling The reorganization or renovation of heart tissue that contributes to the maturation of the connection between an atrium and a ventricle. tmpzr1t_l9r_go_relaxed.owl atrioventricular junction remodeling|atrio-ventricular junction remodeling dph 2009-10-22T08:35:36Z biological_process owl:Class GO:0090521 biolink:NamedThing glomerular visceral epithelial cell migration The orderly movement of a podocyte from one site to another, often during the development of a multicellular organism or multicellular structure. A podocyte is a specialized kidney epithelial cell. tmpzr1t_l9r_go_relaxed.owl podocyte cell migration tb 2013-01-08T11:08:57Z biological_process owl:Class GO:2000476 biolink:NamedThing positive regulation of opioid receptor signaling pathway Any process that activates or increases the frequency, rate or extent of opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of opioid receptor signalling pathway bf 2011-03-09T09:41:35Z biological_process owl:Class GO:0018030 biolink:NamedThing peptidyl-lysine N6-myristoyltransferase activity Catalysis of the transfer of a myristoyl group to the N6 nitrogen atom on a lysine residue of a peptide or protein molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047323 biolink:NamedThing [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity Catalysis of the reaction: ATP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) = ADP + 3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphate. tmpzr1t_l9r_go_relaxed.owl [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] kinase activity|branched-chain oxo acid dehydrogenase kinase (phosphorylating) activity|ATP:3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) phosphotransferase activity|branched-chain keto acid dehydrogenase kinase activity|3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) kinase activity|BCODH kinase activity|STK2|BCK|branched-chain alpha-ketoacid dehydrogenase kinase activity|branched-chain 2-oxo acid dehydrogenase kinase activity|BCKD kinase activity RHEA:17301|Reactome:R-HSA-5693148|EC:2.7.11.4|MetaCyc:2.7.11.4-RXN molecular_function owl:Class GO:1903714 biolink:NamedThing isoleucine transmembrane transport The directed movement of isoleucine across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-06T08:19:05Z biological_process owl:Class GO:0040038 biolink:NamedThing polar body extrusion after meiotic divisions The cell cycle process in which two small cells are generated, as byproducts destined to degenerate, as a result of the first and second meiotic divisions of a primary oocyte during its development to a mature ovum. One polar body is formed in the first division of meiosis and the other in the second division; at each division, the cytoplasm divides unequally, so that the polar body is of much smaller size than the developing oocyte. At the second division in which a polar body is formed, the polar body and the developing oocyte each contain a haploid set of chromosomes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019429 biolink:NamedThing fluorene catabolic process The chemical reactions and pathways resulting in the breakdown of fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents. tmpzr1t_l9r_go_relaxed.owl fluorene breakdown|fluorene degradation|fluorene metabolism|fluorene metabolic process|fluorene catabolism UM-BBD_pathwayID:flu|MetaCyc:FLUORENE-DEG-9-ONE-PWY GO:0018917 biological_process owl:Class GO:1902147 biolink:NamedThing regulation of response to cytokinesis checkpoint signaling Any process that modulates the frequency, rate or extent of response to cytokinesis checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl regulation of cytokinesis checkpoint effector process|regulation of response to signal involved in cytokinesis checkpoint jl 2013-05-21T15:43:53Z GO:1902149 biological_process owl:Class GO:0102218 biolink:NamedThing starch, H2O dikinase activity Catalysis of the reaction: n ATP + n H2O + starch = n AMP + n hydrogenphosphate + a 6-phosphogluco-amylopectin. tmpzr1t_l9r_go_relaxed.owl EC:2.7.9.4|MetaCyc:RXN-12203 molecular_function owl:Class GO:0050521 biolink:NamedThing alpha-glucan, water dikinase activity Catalysis of the reaction: ATP + alpha-glucan + H2O = AMP + phospho-alpha-glucan + phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:alpha-glucan, water phosphotransferase activity|starch-related R1 protein activity|GWD|a-glucan, water dikinase activity|alpha-glucan,water dikinase activity MetaCyc:2.7.9.4-RXN|EC:2.7.9.4|RHEA:11668 molecular_function owl:Class GO:0042561 biolink:NamedThing alpha-amyrin synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = alpha-amyrin. This reaction is a cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into alpha-amyrin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8434 molecular_function owl:Class GO:0045792 biolink:NamedThing negative regulation of cell size Any process that reduces cell size. tmpzr1t_l9r_go_relaxed.owl down-regulation of cell size|down regulation of cell size|inhibition of cell size|downregulation of cell size biological_process owl:Class GO:0007402 biolink:NamedThing ganglion mother cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a ganglion mother cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019797 biolink:NamedThing procollagen-proline 3-dioxygenase activity Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-3-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl protocollagen proline 3-hydroxylase activity|prolyl 3-hydroxylase activity|prolyl-4-hydroxyprolyl-glycyl-peptide, 2-oxoglutarate: oxygen oxidoreductase, 3-hydroxylating activity|procollagen-proline,2-oxoglutarate 3-dioxygenase activity|procollagen-L-proline,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity|proline,2-oxoglutarate 3-dioxygenase activity MetaCyc:PROCOLLAGEN-PROLINE-3-DIOXYGENASE-RXN|Reactome:R-HSA-1980233|EC:1.14.11.7|KEGG_REACTION:R03218|RHEA:22872 molecular_function owl:Class GO:1903903 biolink:NamedThing regulation of establishment of T cell polarity Any process that modulates the frequency, rate or extent of establishment of T cell polarity. tmpzr1t_l9r_go_relaxed.owl regulation of T cell polarization|regulation of establishment of T lymphocyte polarity|regulation of establishment of T-lymphocyte polarity|regulation of T lymphocyte polarization|regulation of T-cell polarization|regulation of establishment of T-cell polarity als 2015-02-09T10:50:21Z biological_process owl:Class GO:1905447 biolink:NamedThing negative regulation of mitochondrial ATP synthesis coupled electron transport Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial ATP synthesis coupled electron transport. tmpzr1t_l9r_go_relaxed.owl down regulation of mitochondrial ATP synthesis coupled electron transport|inhibition of mitochondrial ATP synthesis coupled electron transport|downregulation of mitochondrial ATP synthesis coupled electron transport|down-regulation of mitochondrial ATP synthesis coupled electron transport dph 2016-09-15T18:58:06Z biological_process owl:Class GO:0003277 biolink:NamedThing apoptotic process involved in endocardial cushion morphogenesis Any apoptotic process that contributes to the shaping of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in endocardial cushion morphogenesis dph 2009-10-20T09:37:03Z biological_process owl:Class GO:0007488 biolink:NamedThing histoblast morphogenesis The process in which the anatomical structures derived from the histoblast disc are generated and organized. This includes the transformation of histoblast cells into adult structures during pupal metamorphosis. Histoblast cells are cells founded in the embryo that are the progenitors to the adult abdomen. tmpzr1t_l9r_go_relaxed.owl histoblast metamorphosis biological_process owl:Class GO:0051400 biolink:NamedThing BH domain binding Binding to a Bcl-2 homology (BH) protein domain. Bcl-2-related proteins share homology in one to four conserved regions designated the Bcl-2 homology (BH) domains BH1, BH2, BH3 and BH4. These domains contribute at multiple levels to the function of these proteins in cell death and survival. Anti-apoptotic members of the Bcl-2 family have four BH domains (BH1-BH4). Pro-apoptotic members have fewer BH domains. tmpzr1t_l9r_go_relaxed.owl Bcl-2 homology domain binding molecular_function owl:Class GO:0051369 biolink:NamedThing peptidyl-threonine decanoylation The decanoylation of peptidyl-threonine to form peptidyl-O3-decanoyl-L-threonine, typical of the protein ghrelin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0387 biological_process owl:Class GO:0140690 biolink:NamedThing dihydropyrimidine dehydrogenase (NAD+) complex A heteromultimeric complex capable of dihydropyrimidine dehydrogenase (NAD+); in E. coli, composed of PreA and PreT. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21891 MetaCyc:CPLX0-7788 pg 2021-08-04T05:52:44Z cellular_component owl:Class GO:0072079 biolink:NamedThing nephron tubule formation The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-01T02:29:26Z biological_process owl:Class GO:1902657 biolink:NamedThing protein localization to prospore membrane A process in which a protein is transported to, or maintained in, a location within a prospore membrane. tmpzr1t_l9r_go_relaxed.owl protein targeting to forespore membrane|protein localization in prospore membrane|establishment of protein localization in prospore membrane|establishment of protein localisation in prospore membrane|protein targeting to FSM|protein targeting to prospore membrane|establishment of protein localization to prospore membrane|protein targeting to ascospore-type prospore membrane|protein-prospore membrane targeting|establishment of protein localisation to prospore membrane|protein localisation to prospore membrane|protein localisation in prospore membrane dph 2011-11-16T11:28:26Z GO:1902658|GO:0072693 biological_process owl:Class GO:0061455 biolink:NamedThing integral component of muscle cell projection membrane The component of the muscle cell projection membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to muscle cell projection membrane dph 2012-07-27T02:38:01Z cellular_component owl:Class GO:0110164 biolink:NamedThing positive regulation of mitotic spindle elongation (spindle phase three) Any process that activates or increases the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase three). tmpzr1t_l9r_go_relaxed.owl kmv 2019-08-12T15:32:20Z biological_process owl:Class GO:0061614 biolink:NamedThing pri-miRNA transcription by RNA polymerase II The cellular synthesis of primary microRNA (pri-miRNA) transcripts from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. pri-miRNA transcripts are subsequently processed to produce the ~22nt miRNAs that function in gene regulation. tmpzr1t_l9r_go_relaxed.owl pri-miRNA transcription from RNA polymerase II promoter https://github.com/geneontology/go-ontology/issues/14854 dph 2014-04-08T08:42:54Z biological_process owl:Class GO:0046236 biolink:NamedThing mandelate biosynthetic process The chemical reactions and pathways resulting in the formation of mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic. tmpzr1t_l9r_go_relaxed.owl mandelate anabolism|mandelate biosynthesis|mandelate formation|mandelate synthesis biological_process owl:Class GO:0018924 biolink:NamedThing mandelate metabolic process The chemical reactions and pathways involving mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic. tmpzr1t_l9r_go_relaxed.owl mandelic acid metabolic process|mandelic acid metabolism|mandelate metabolism UM-BBD_pathwayID:mca biological_process owl:Class GO:0033952 biolink:NamedThing iota-carrageenase activity Catalysis of the endohydrolysis of 1,4-beta-D-linkages between D-galactose 4-sulfate and 3,6-anhydro-D-galactose-2-sulfate in iota-carrageenans. tmpzr1t_l9r_go_relaxed.owl iota-carrageenan 4-beta-D-glycanohydrolase (configuration-inverting) activity EC:3.2.1.157|MetaCyc:3.2.1.157-RXN molecular_function owl:Class GO:1901075 biolink:NamedThing negative regulation of engulfment of apoptotic cell Any process that stops, prevents or reduces the frequency, rate or extent of engulfment of apoptotic cell. tmpzr1t_l9r_go_relaxed.owl down regulation of engulfment of cell corpse|inhibition of engulfment of apoptotic cell|down-regulation of engulfment of apoptotic cell corpse|down regulation of engulfment of apoptotic cell|inhibition of engulfment of apoptotic cell corpse|downregulation of engulfment of apoptotic cell|downregulation of engulfment of apoptotic cell corpse|down-regulation of engulfment of cell corpse|inhibition of engulfment of cell corpse|down-regulation of engulfment of apoptotic cell|negative regulation of engulfment of cell corpse|downregulation of engulfment of cell corpse|negative regulation of engulfment of apoptotic cell corpse|down regulation of engulfment of apoptotic cell corpse kmv 2012-07-02T07:32:43Z biological_process owl:Class GO:0016012 biolink:NamedThing sarcoglycan complex A protein complex formed of four sarcoglycans plus sarcospan; there are six known sarcoglycans: alpha-, beta-, gamma-, delta-, epsilon- and zeta-sarcoglycan; all are N-glycosylated single-pass transmembrane proteins. The sarcoglycan-sarcospan complex is a subcomplex of the dystrophin glycoprotein complex, and is fixed to the dystrophin axis by a lateral association with the dystroglycan complex. tmpzr1t_l9r_go_relaxed.owl sarcoglycan-sarcospan complex cellular_component owl:Class GO:2000299 biolink:NamedThing negative regulation of Rho-dependent protein serine/threonine kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of Rho-dependent protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of Rho-associated protein kinase activity|negative regulation of ROCK kinase activity mah 2010-12-23T11:44:57Z biological_process owl:Class GO:0120042 biolink:NamedThing negative regulation of macrophage proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage proliferation. tmpzr1t_l9r_go_relaxed.owl krc 2017-05-10T20:51:40Z biological_process owl:Class GO:2000647 biolink:NamedThing negative regulation of stem cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2011-04-27T01:04:22Z biological_process owl:Class GO:0071450 biolink:NamedThing cellular response to oxygen radical Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:38:52Z biological_process owl:Class GO:0006249 biolink:NamedThing dCMP catabolic process The chemical reactions and pathways resulting in the breakdown of dCMP, deoxycytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl dCMP breakdown|dCMP catabolism|dCMP degradation biological_process owl:Class GO:0046063 biolink:NamedThing dCMP metabolic process The chemical reactions and pathways involving dCMP, deoxycytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl dCMP metabolism biological_process owl:Class GO:1904576 biolink:NamedThing response to tunicamycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tunicamycin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T18:01:52Z biological_process owl:Class GO:0070563 biolink:NamedThing negative regulation of vitamin D receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the vitamin D receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl downregulation of vitamin D receptor signaling pathway|down regulation of vitamin D receptor signaling pathway|inhibition of vitamin D receptor signaling pathway|negative regulation of VDR signalling pathway|negative regulation vitamin D receptor signalling pathway|down-regulation of vitamin D receptor signaling pathway|negative regulation of VDR signaling pathway mah 2009-04-14T01:59:21Z biological_process owl:Class GO:1905954 biolink:NamedThing positive regulation of lipid localization Any process that activates or increases the frequency, rate or extent of lipid localization. tmpzr1t_l9r_go_relaxed.owl activation of lipid localisation|up-regulation of lipid localization|up regulation of lipid localization|up regulation of lipid localisation|upregulation of lipid localization|activation of lipid localization|positive regulation of lipid localisation|upregulation of lipid localisation|up-regulation of lipid localisation rz 2017-02-21T12:12:49Z biological_process owl:Class GO:0004550 biolink:NamedThing nucleoside diphosphate kinase activity Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl nucleoside diphosphate (UDP) kinase activity|ATP:nucleoside-diphosphate phosphotransferase activity|nucleoside-diphosphate kinase activity|UDP kinase activity|nucleoside 5'-diphosphate kinase activity|NDK activity|uridine diphosphate kinase activity|nucleoside 5'-diphosphate phosphotransferase activity|nucleotide phosphate kinase activity|nucleoside diphosphokinase activity Reactome:R-HSA-2162096|Reactome:R-HSA-482619|Reactome:R-HSA-482804|Reactome:R-HSA-482812|EC:2.7.4.6|MetaCyc:NUCLEOSIDE-DIP-KIN-RXN|Reactome:R-HSA-6806877|Reactome:R-HSA-482621 molecular_function owl:Class GO:0032084 biolink:NamedThing regulation of type I site-specific deoxyribonuclease activity Any process that modulates the frequency, rate or extent of a type I restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl type I restriction enzyme regulator|type I restriction endodeoxyribonuclease regulator|regulation of type I restriction endodeoxyribonuclease activity biological_process owl:Class GO:0043112 biolink:NamedThing receptor metabolic process The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl receptor metabolism biological_process owl:Class GO:0072170 biolink:NamedThing metanephric tubule development The progression of a metanephric tubule over time, from its initial formation to the mature structure. A metanephric tubule is an epithelial tube that is part of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:58:18Z biological_process owl:Class GO:0006653 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phosphocholine metabolic process The chemical reactions and pathways involving any 1,2-diacyl-sn-glycero-3-phosphocholine, the compounds most commonly designated lecithin. tmpzr1t_l9r_go_relaxed.owl 1,2-diacyl-sn-glycero-3-phosphocholine metabolism|lecithin metabolic process biological_process owl:Class GO:0016108 biolink:NamedThing tetraterpenoid metabolic process The chemical reactions and pathways involving tetraterpenoid compounds, terpenoids with eight isoprene units. tmpzr1t_l9r_go_relaxed.owl tetraterpenoid metabolism|tetraterpene metabolism|tetraterpene metabolic process biological_process owl:Class GO:1990634 biolink:NamedThing protein phosphatase 5 binding Binding to protein phosphatase 5. tmpzr1t_l9r_go_relaxed.owl protein phosphatase T binding sl 2015-02-10T21:30:41Z molecular_function owl:Class GO:0019903 biolink:NamedThing protein phosphatase binding Binding to a protein phosphatase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051958 biolink:NamedThing methotrexate transport The directed movement of methotrexate, 4-amino-10-methylformic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Methotrexate is a folic acid analogue and a potent competitive inhibitor of dihydrofolate reductase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033915 biolink:NamedThing mannan 1,2-(1,3)-alpha-mannosidase activity Catalysis of the hydrolysis of (1->2) and (1->3) linkages in mannan, releasing mannose. tmpzr1t_l9r_go_relaxed.owl exo-1,2-1,3-alpha-mannosidase activity|1,2-1,3-alpha-D-mannan mannohydrolase activity MetaCyc:3.2.1.77-RXN|EC:3.2.1.77 molecular_function owl:Class GO:0060030 biolink:NamedThing dorsal convergence The directed migration of individual cells and small groups of cells toward the dorsal midline during gastrulation. This process does not require cell rearrangement. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900153 biolink:NamedThing positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Any process that activates or increases the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl activation of mRNA catabolism, deadenylylation-dependent|upregulation of mRNA catabolism, deadenylylation-dependent|activation of mRNA breakdown, deadenylation-dependent decay|positive regulation of mRNA catabolism, deadenylation-dependent|up regulation of mRNA catabolic process, deadenylylation-dependent|upregulation of mRNA catabolic process, deadenylation-dependent|up-regulation of mRNA degradation, deadenylation-dependent decay|activation of mRNA catabolic process, deadenylation-dependent|positive regulation of deadenylation-dependent mRNA decay|up-regulation of mRNA catabolism, deadenylylation-dependent|up regulation of mRNA catabolism, deadenylation-dependent|activation of deadenylation-dependent mRNA decay|up-regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|activation of mRNA catabolism, deadenylation-dependent|up regulation of mRNA breakdown, deadenylation-dependent decay|up regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|upregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|upregulation of mRNA breakdown, deadenylation-dependent decay|positive regulation of mRNA degradation, deadenylation-dependent decay|activation of nuclear mRNA catabolic process, deadenylation-dependent decay|positive regulation of mRNA catabolic process, deadenylation-dependent|upregulation of mRNA catabolic process, deadenylylation-dependent|positive regulation of mRNA breakdown, deadenylation-dependent decay|up-regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|activation of mRNA catabolic process, deadenylylation-dependent|up regulation of mRNA degradation, deadenylation-dependent decay|up regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|upregulation of mRNA catabolism, deadenylation-dependent|up-regulation of mRNA catabolic process, deadenylylation-dependent|activation of mRNA degradation, deadenylation-dependent decay|up regulation of deadenylation-dependent mRNA decay|positive regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|up regulation of mRNA catabolic process, deadenylation-dependent|up regulation of mRNA catabolism, deadenylylation-dependent|up-regulation of mRNA breakdown, deadenylation-dependent decay|positive regulation of mRNA catabolism, deadenylylation-dependent|activation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|positive regulation of mRNA catabolic process, deadenylylation-dependent|up-regulation of mRNA catabolic process, deadenylation-dependent|upregulation of deadenylation-dependent mRNA decay|upregulation of mRNA degradation, deadenylation-dependent decay|upregulation of nuclear mRNA catabolic process, deadenylation-dependent decay|up-regulation of deadenylation-dependent mRNA decay|up-regulation of mRNA catabolism, deadenylation-dependent bf 2012-03-07T09:14:52Z biological_process owl:Class GO:0031827 biolink:NamedThing type 2B serotonin receptor binding Binding to a type 2B serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 2B serotonin receptor ligand|5-hydroxytryptamine 2B receptor binding molecular_function owl:Class GO:0034741 biolink:NamedThing APC-tubulin-IQGAP1 complex A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), alpha-tubulin, gamma-tubulin, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization. tmpzr1t_l9r_go_relaxed.owl 60S APC complex Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0150099 biolink:NamedThing neuron-glial cell signaling Cell-cell signaling that mediates the transfer of information from a neuron to a glial cell. This signalling has been shown to be mediated by various molecules released by different types of neurons, e.g. glutamate, gamma-amino butyric acid (GABA), noradrenaline, acetylcholine, dopamine and adenosine. tmpzr1t_l9r_go_relaxed.owl neurone-glial cell signaling|neuron-glia signaling|neurone-glia signaling|neurone-glial cell signalling|neurone-glia signalling|neuron-glia signalling|neuron-glial cell signalling bc 2018-12-17T12:30:12Z biological_process owl:Class GO:1904686 biolink:NamedThing regulation of mitotic spindle disassembly Any process that modulates the frequency, rate or extent of mitotic spindle disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of spindle breakdown during mitosis|regulation of mitotic spindle degradation|regulation of mitotic spindle breakdown|regulation of spindle degradation during mitosis|regulation of mitotic spindle catabolism|regulation of spindle disassembly during mitosis al 2015-09-24T14:20:07Z biological_process owl:Class GO:0004471 biolink:NamedThing malate dehydrogenase (decarboxylating) (NAD+) activity Catalysis of the reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD-linked malic enzyme|(S)-malate:NAD+ oxidoreductase (oxaloacetate-decarboxylating)|NAD-malic enzyme activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|(S)-malate:NAD+ oxidoreductase (decarboxylating)|malate dehydrogenase (decarboxylating) activity|NAD-specific malic enzyme|'malic' enzyme MetaCyc:MALIC-NAD-RXN|EC:1.1.1.38|RHEA:12653|EC:1.1.1.39|Reactome:R-HSA-9012268|MetaCyc:1.1.1.39-RXN|KEGG_REACTION:R00214 For decarboxylation of oxaloacetate (the second substrate listed in EC:1.1.1.38), see 'oxaloacetate decarboxylase activity ; GO:0008948'. GO:0016619|GO:0004472 molecular_function owl:Class GO:0061985 biolink:NamedThing carbon catabolite repression A process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T16:49:48Z biological_process owl:Class GO:1905053 biolink:NamedThing positive regulation of base-excision repair Any process that activates or increases the frequency, rate or extent of base-excision repair. tmpzr1t_l9r_go_relaxed.owl upregulation of BER|upregulation of base-excision repair|up regulation of base-excision repair|up regulation of BER|activation of BER|up-regulation of BER|positive regulation of BER|up-regulation of base-excision repair|activation of base-excision repair ah 2016-03-16T10:52:18Z biological_process owl:Class GO:0036426 biolink:NamedThing ditrans, polycis-undecaprenyl-phosphate mannosyltransferase activity Catalysis of the reaction: ditrans,octacis-undecaprenyl phosphate + GDP-alpha-D-mannose = D-mannosyl undecaprenyl phosphate+ GDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2.4.1.54-RXN|KEGG_REACTION:R07257 bf 2013-09-16T13:21:01Z molecular_function owl:Class GO:0098888 biolink:NamedThing extrinsic component of presynaptic membrane The component of the presynaptic membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic component of presynaptic plasma membrane cellular_component owl:Class GO:0018501 biolink:NamedThing cis-chlorobenzene dihydrodiol dehydrogenase activity Catalysis of the conversion of a di- or tetrachlorinated dienol to the corresponding catechol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0411 molecular_function owl:Class GO:1902120 biolink:NamedThing negative regulation of meiotic spindle elongation Any process that stops, prevents or reduces the frequency, rate or extent of meiotic spindle elongation. tmpzr1t_l9r_go_relaxed.owl down-regulation of spindle elongation during meiosis|down regulation of meiotic spindle elongation|downregulation of meiotic spindle elongation|inhibition of meiotic spindle elongation|down regulation of spindle elongation during meiosis|down-regulation of meiotic spindle elongation|negative regulation of spindle elongation during meiosis|inhibition of spindle elongation during meiosis|downregulation of spindle elongation during meiosis al 2013-05-15T15:15:53Z biological_process owl:Class GO:0120205 biolink:NamedThing photoreceptor proximal connecting cilium The proximal region of the photoreceptor connecting cilium is similar to the transition zone of unspecialized primary cilia and houses several major transition zone complexes, including NPHP, MKS, and RPGR. tmpzr1t_l9r_go_relaxed.owl PCC|photoreceptor PCC krc 2019-05-10T22:47:08Z cellular_component owl:Class GO:2000164 biolink:NamedThing negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:06:15Z biological_process owl:Class GO:2000163 biolink:NamedThing regulation of planar cell polarity pathway involved in outflow tract morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:06:13Z biological_process owl:Class GO:0018953 biolink:NamedThing p-cymene metabolic process The chemical reactions and pathways involving p-cymene, 1-methyl-4-isopropylbenzene, one of the alkyl-substituted aromatic hydrocarbons found in volatile oils from over 100 plants. tmpzr1t_l9r_go_relaxed.owl p-cymene metabolism UM-BBD_pathwayID:pcy biological_process owl:Class GO:0000241 biolink:NamedThing diakinesis The cell cycle phase which follows diplotene during prophase I of meiosis, the separation of homologous chromosomes is complete and crossing over has occurred. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Diakinesis|Wikipedia:Meiosis#Diakinesis Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1905745 biolink:NamedThing negative regulation of mRNA cis splicing, via spliceosome Any process that stops, prevents or reduces the frequency, rate or extent of mRNA cis splicing, via spliceosome. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-07T14:01:42Z biological_process owl:Class GO:1902087 biolink:NamedThing dimethylsulfoniopropionate catabolic process The chemical reactions and pathways resulting in the breakdown of S,S-dimethyl-beta-propiothetin. tmpzr1t_l9r_go_relaxed.owl S,S-dimethyl-beta-propiothetin catabolic process|S,S-dimethyl-beta-propiothetin catabolism|S,S-dimethyl-beta-propiothetin breakdown|S,S-dimethyl-beta-propiothetin degradation tb 2013-04-26T17:29:13Z biological_process owl:Class GO:1905173 biolink:NamedThing eukaryotic translation initiation factor 2B complex assembly The aggregation, arrangement and bonding together of a set of components to form an eukaryotic translation initiation factor 2B complex. tmpzr1t_l9r_go_relaxed.owl eukaryotic translation initiation factor 2B complex formation|eIF-2B assembly|eif2B formation|eif2B assembly|eIF-2B formation mah 2016-05-03T11:00:21Z biological_process owl:Class GO:0045914 biolink:NamedThing negative regulation of catecholamine metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving catecholamine. tmpzr1t_l9r_go_relaxed.owl inhibition of catecholamine metabolic process|down regulation of catecholamine metabolic process|down-regulation of catecholamine metabolic process|downregulation of catecholamine metabolic process|negative regulation of catecholamine metabolism biological_process owl:Class GO:0039534 biolink:NamedThing negative regulation of MDA-5 signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) MDA-5 (also known as IFIH1) binding to viral RNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of melanoma differentiation-associated gene 5 signaling pathway|negative regulation of MDA-5 signalling pathway|negative regulation of MDA5 signaling pathway|negative regulation of IFIH1 signaling pathway bf 2012-01-03T11:21:20Z biological_process owl:Class GO:0039533 biolink:NamedThing regulation of MDA-5 signaling pathway Any process that modulates the frequency, rate or extent of the series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) MDA-5 (also known as IFIH1) binding to viral RNA. tmpzr1t_l9r_go_relaxed.owl regulation of IFIH1 signaling pathway|regulation of melanoma differentiation-associated gene 5 signaling pathway|regulation of MDA-5 signalling pathway|regulation of MDA5 signaling pathway bf 2012-01-03T11:17:31Z biological_process owl:Class GO:0097743 biolink:NamedThing de novo centriole assembly via blepharoplast A de novo centriole assembly process observed in multi-ciliated sperm cells of some primitive land plants, and where centrioles are formed from a blepharoplast, ultimately giving rise to multiple cilia on the sperm surface. tmpzr1t_l9r_go_relaxed.owl multiciliation|multiciliogenesis pr 2016-10-19T15:18:34Z biological_process owl:Class GO:0097742 biolink:NamedThing de novo centriole assembly Centriole assembly in which a centriole arises de novo, rather than by replication from an existing centriole. This process may occur via different mechanisms. Examples include the deuterosome pathway in multicilated epithelial animal cells and formation of centrioles during parthenogenesis in some insects. tmpzr1t_l9r_go_relaxed.owl de novo basal body amplification|multiciliation|de novo basal body biogenesis|de novo basal body generation|multiciliogenesis|de novo basal body assembly|de novo centriole amplification|de novo ciliary basal body assembly|acentriolar basal body biogenesis pr 2016-10-19T15:13:50Z biological_process owl:Class GO:0052760 biolink:NamedThing coenzyme F420-dependent 2,4-dinitrophenol reductase activity Catalysis of the reaction: 2,4-dinitrophenol + H- = 2,4-dinitrophenol hydride Meisenheimer complex. Coenzyme F420 supplies the hydride (H-) in the reaction. tmpzr1t_l9r_go_relaxed.owl DNP reductase activity|coenzyme F420-dependent 2,4-dinitrophenol hydride transferase activity EC:1.3.99.-|UM-BBD_reactionID:r1071 ai 2011-09-28T02:47:31Z molecular_function owl:Class GO:1901759 biolink:NamedThing beta-L-Ara4N-lipid A metabolic process The chemical reactions and pathways involving beta-L-Ara4N-lipid A. tmpzr1t_l9r_go_relaxed.owl beta-L-Ara4N-lipid A metabolism|4-amino-4-deoxy-beta-L-arabinose-lipid A metabolism|4-amino-4-deoxy-beta-L-arabinose-lipid A metabolic process pr 2013-01-14T12:52:57Z biological_process owl:Class GO:0033671 biolink:NamedThing negative regulation of NAD+ kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of NAD kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to an NAD molecule. tmpzr1t_l9r_go_relaxed.owl downregulation of NAD+ kinase activity|inhibition of NAD+ kinase activity|down-regulation of NAD+ kinase activity|down regulation of NAD+ kinase activity|NAD+ kinase inhibitor biological_process owl:Class GO:0046282 biolink:NamedThing cinnamic acid ester catabolic process The chemical reactions and pathways resulting in the breakdown of ester derivatives of cinnamic acid, phenylpropenoic acid. tmpzr1t_l9r_go_relaxed.owl cinnamic acid ester catabolism|cinnamic acid ester degradation|cinnamic acid ester breakdown biological_process owl:Class GO:0009801 biolink:NamedThing cinnamic acid ester metabolic process The chemical reactions and pathways involving ester derivatives of cinnamic acid, phenylpropenoic acid. tmpzr1t_l9r_go_relaxed.owl cinnamic acid ester metabolism biological_process owl:Class GO:0090465 biolink:NamedThing arginine homeostasis Any process involved in the maintenance of an internal steady state of arginine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0042286 biolink:NamedThing glutamate-1-semialdehyde 2,1-aminomutase activity Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate. tmpzr1t_l9r_go_relaxed.owl glutamate-1-semialdehyde aminotransferase activity|(S)-4-amino-5-oxopentanoate 4,5-aminomutase activity EC:5.4.3.8|RHEA:14265|MetaCyc:GSAAMINOTRANS-RXN|KEGG_REACTION:R02272 molecular_function owl:Class GO:0061377 biolink:NamedThing mammary gland lobule development The progression of the mammary gland lobule over time, from its formation to the mature structure. A mammary gland lobule is a small rounded projection of the mammary gland. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:36:29Z biological_process owl:Class GO:0072749 biolink:NamedThing cellular response to cytochalasin B Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytochalasin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:37:15Z biological_process owl:Class GO:0048194 biolink:NamedThing Golgi vesicle budding The evagination of the Golgi membrane, resulting in formation of a vesicle. tmpzr1t_l9r_go_relaxed.owl dictyosome vesicle budding|Golgi-derived vesicle budding biological_process owl:Class GO:0140351 biolink:NamedThing glycosylceramide flippase activity Catalysis of the movement of glycosylceramide from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. Glycosylceramides are ceramides containing a functional group derived from a sugar. tmpzr1t_l9r_go_relaxed.owl glycoceramide flippase activity|galactocerebroside flippase activity|glucosylceramide flippase activity|glycosylceramide flippase activity (exoplasmic to cytosolic leaftlet)|galactosylceramide flippase activity pg 2019-05-20T13:29:48Z molecular_function owl:Class GO:0030585 biolink:NamedThing phosphoenolpyruvate carboxykinase (diphosphate) activity Catalysis of the reaction: diphosphate + oxaloacetate = CO(2) + phosphate + phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvic carboxykinase (pyrophosphate)|phosphoenolpyruvic carboxykinase|PEP carboxyphosphotransferase activity|phosphoenolpyruvic carboxytransphosphorylase activity|phosphoenolpyruvate carboxyphosphotransferase activity|phosphopyruvate carboxykinase|phosphopyruvate carboxykinase (pyrophosphate)|phosphoenolpyruvate carboxylase (pyrophosphate)|phosphoenolpyruvic carboxylase (pyrophosphate)|PEPCTrP|phosphopyruvate carboxylase (pyrophosphate)|phosphoenolpyruvate carboxykinase (pyrophosphate) activity|phosphoenolpyruvate carboxytransphosphorylase activity|diphosphate:oxaloacetate carboxy-lyase (transphosphorylating)|diphosphate:oxaloacetate carboxy-lyase (transphosphorylating; phosphoenolpyruvate-forming) MetaCyc:4.1.1.38-RXN|RHEA:22356|KEGG_REACTION:R00346|EC:4.1.1.38 molecular_function owl:Class GO:0045049 biolink:NamedThing protein insertion into ER membrane by N-terminal cleaved signal sequence A process of protein insertion into the endoplasmic reticulum (ER) membrane in which N-terminal cleaved signal sequences direct polypeptides to the ER. tmpzr1t_l9r_go_relaxed.owl protein insertion into ER membrane, N-terminal cleaved signal sequence mediated|protein insertion into endoplasmic reticulum membrane by N-terminal cleaved signal sequence|N-terminal cleaved signal sequence mediated protein insertion into ER membrane|protein-endoplasmic reticulum insertion by N-terminal cleaved signal sequence|protein-ER insertion by N-terminal cleaved signal sequence biological_process owl:Class GO:0071466 biolink:NamedThing cellular response to xenobiotic stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a xenobiotic, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl cellular response to drug https://github.com/geneontology/go-ontology/issues/19460 mah 2009-12-18T11:38:48Z GO:0035690 biological_process owl:Class GO:0015232 biolink:NamedThing heme transmembrane transporter activity Enables the transfer of heme from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl heme transporter activity|haem transporter activity https://github.com/geneontology/go-ontology/issues/19472 Reactome:R-HSA-917892|Reactome:R-HSA-917870|Reactome:R-HSA-9661408 molecular_function owl:Class GO:0019248 biolink:NamedThing D-lactate biosynthetic process from methylglyoxal via (R)-lactaldehyde The chemical reactions and pathways resulting in the formation of D-lactate from methylglyoxal, via the intermediate (R)-lactaldehyde. tmpzr1t_l9r_go_relaxed.owl D-lactate formation from methylglyoxal via (R)-lactaldehyde|D-lactate synthesis from methylglyoxal via (R)-lactaldehyde|D-lactate anabolism from methylglyoxal via (R)-lactaldehyde MetaCyc:MGLDLCTANA-PWY biological_process owl:Class GO:1903585 biolink:NamedThing negative regulation of histone deubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of histone deubiquitination. tmpzr1t_l9r_go_relaxed.owl downregulation of histone deubiquitination|negative regulation of histone deubiquitinylation|inhibition of histone deubiquitinylation|inhibition of histone deubiquitination|downregulation of histone deubiquitylation|down regulation of histone deubiquitination|downregulation of histone deubiquitinylation|down-regulation of histone deubiquitinylation|down regulation of histone deubiquitylation|down-regulation of histone deubiquitylation|inhibition of histone deubiquitylation|negative regulation of histone deubiquitylation|down-regulation of histone deubiquitination|down regulation of histone deubiquitinylation lb 2014-11-03T13:47:35Z biological_process owl:Class GO:0015430 biolink:NamedThing ABC-type glycerol-3-phosphate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + glycerol-3-phosphate(out) = ADP + phosphate + glycerol-3-phosphate(in). tmpzr1t_l9r_go_relaxed.owl glycerol-3-phosphate-transporting ATPase|ATPase-coupled glycerol-2-phosphate transmembrane transporter activity|ABC-type glycerol 3-phosphate transporter|ATP-dependent glycerol-2-phosphate transmembrane transporter activity|glycerol-phosphate porter activity|ATPase-coupled glycerol-3-phosphate transmembrane transporter activity|glycerol-2-phosphate-transporting ATPase activity|glycerol-3-phosphate ABC transporter|glycerol phosphate-importing ATPase activity https://github.com/geneontology/go-ontology/issues/17164 EC:7.6.2.10|RHEA:21668|MetaCyc:3.6.3.20-RXN GO:0070812|GO:0015610 molecular_function owl:Class GO:0004132 biolink:NamedThing dCMP deaminase activity Catalysis of the reaction: dCMP + H2O = dUMP + NH3. tmpzr1t_l9r_go_relaxed.owl deoxycytidine-5'-monophosphate aminohydrolase activity|deoxycytidylate deaminase activity|deoxycytidine-5'-phosphate deaminase activity|deoxy-CMP-deaminase activity|deoxycytidylate aminohydrolase activity|deoxycytidine monophosphate deaminase activity|dCMP aminohydrolase activity RHEA:22924|EC:3.5.4.12|MetaCyc:DCMP-DEAMINASE-RXN|Reactome:R-HSA-73596 molecular_function owl:Class GO:1900891 biolink:NamedThing negative regulation of pentadecane metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of pentadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of pentadecane metabolic process|down-regulation of pentadecane metabolism|down-regulation of pentadecane metabolic process|inhibition of pentadecane metabolism|downregulation of pentadecane metabolism|down regulation of pentadecane metabolism|negative regulation of pentadecane metabolism|down regulation of pentadecane metabolic process|inhibition of pentadecane metabolic process tt 2012-06-13T03:06:11Z biological_process owl:Class GO:0033593 biolink:NamedThing BRCA2-MAGE-D1 complex A heterodimeric protein complex formed of BRCA2 and MAGE-D1; may mediate the synergistic activities of the two proteins in regulating cell growth. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014710 biolink:NamedThing negative regulation of somitomeric trunk muscle development Any process that stops, prevents, or reduces the frequency, rate or extent of somitomeric trunk muscle development. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071559 biolink:NamedThing response to transforming growth factor beta Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus. tmpzr1t_l9r_go_relaxed.owl response to transforming growth factor beta stimulus|response to TGFbeta stimulus|response to TGF-beta stimulus mah 2010-01-20T11:49:59Z biological_process owl:Class GO:0099126 biolink:NamedThing transforming growth factor beta complex A protein complex acting as ligand of the transforming growth factor beta receptor complex, typically a homodimer of any of the TFGbeta isoforms. The precursor of TGFbeta proteins is cleaved into mature TGFbeta and the latency-associated peptide (LAP), which remains non-covalently linked to mature TGFbeta rendering it inactive. TGFbeta is activated by dimerisation and dissociation of the LAP. tmpzr1t_l9r_go_relaxed.owl TGFbeta dimer|TGFB complex|TGFB dimer|TGF-beta dimer|TGFbeta complex|TGF-beta complex cellular_component owl:Class GO:0019178 biolink:NamedThing NADP phosphatase activity Catalysis of the reaction: H2O + NADP+ = NAD+ + phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:NADPPHOSPHAT-RXN molecular_function owl:Class GO:2000524 biolink:NamedThing negative regulation of T cell costimulation Any process that stops, prevents or reduces the frequency, rate or extent of T cell costimulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-cell costimulation|negative regulation of T lymphocyte costimulation|negative regulation of T-lymphocyte costimulation|negative regulation of T cell co-stimulation|negative regulation of T-cell co-stimulation ebc 2011-03-23T10:23:31Z biological_process owl:Class GO:0006272 biolink:NamedThing leading strand elongation The process in which an existing DNA strand is extended continuously in a 5' to 3' direction by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication. Leading strand elongation proceeds in the same direction as the replication fork. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12633 biological_process owl:Class GO:1904903 biolink:NamedThing ESCRT III complex disassembly The disaggregation of an ESCRT III complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl pad 2016-01-18T13:38:14Z biological_process owl:Class GO:1904896 biolink:NamedThing ESCRT complex disassembly The disaggregation of an ESCRT complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl endosomal sorting complex required for transport disassembly pad 2016-01-12T10:27:30Z biological_process owl:Class GO:0000426 biolink:NamedThing micropexophagy Degradation of a peroxisome by lysosomal microautophagy. tmpzr1t_l9r_go_relaxed.owl Note that this term is not a child of pexophagy because the community usually uses the latter to refer to the macroautohagy process. biological_process owl:Class GO:0140712 biolink:NamedThing negative regulation of Frizzled Nuclear Import pathway Any process that stops, prevents, or reduces the frequency, rate or extent of a Frizzled Nuclear Import pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of FNI|negative regulation of Frizzled Nuclear Import Wnt Pathway https://github.com/geneontology/go-ontology/issues/21483 pg 2021-09-08T09:18:32Z biological_process owl:Class GO:0061145 biolink:NamedThing lung smooth muscle development The process whose specific outcome is the progression of smooth muscle in the lung over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T10:46:35Z biological_process owl:Class GO:0070393 biolink:NamedThing teichoic acid catabolic process The chemical reactions and pathways resulting in the breakdown of teichoic acid, which is a major component of the cell wall of Gram-positive bacteria and typically consists of a polymer of glycerol-phosphate or ribitol-phosphate to which are attached glycosyl and D-alanyl ester residues. tmpzr1t_l9r_go_relaxed.owl teichoic acid degradation|teichoic acid catabolism|teichoic acid breakdown biological_process owl:Class GO:1904682 biolink:NamedThing cellular response to 3-methylcholanthrene Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3-methylcholanthrene stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-09-22T19:50:10Z biological_process owl:Class GO:1903166 biolink:NamedThing cellular response to polycyclic arene Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-07-09T18:33:04Z biological_process owl:Class GO:0042467 biolink:NamedThing orthokinesis The movement of a cell or organism in response to a stimulus in which the speed or frequency of movement is increased or decreased. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042465 biolink:NamedThing kinesis The movement of a cell or organism in response to a stimulus in which the rate of movement depends on the intensity (rather than the direction) of the stimulus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Kinesis biological_process owl:Class GO:0043618 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to stress Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000218 biolink:NamedThing negative regulation of invasive growth in response to glucose limitation Any process that stops, prevents, or reduces the frequency, rate or extent of invasive growth in response to glucose limitation. tmpzr1t_l9r_go_relaxed.owl negative regulation of colony morphology mah 2010-11-03T04:36:00Z biological_process owl:Class GO:1901053 biolink:NamedThing sarcosine catabolic process The chemical reactions and pathways resulting in the breakdown of sarcosine. tmpzr1t_l9r_go_relaxed.owl sarcosine breakdown|sarcosine degradation|sarcosine catabolism yaf 2012-06-28T04:52:29Z biological_process owl:Class GO:0051474 biolink:NamedThing glucosylglycerol transmembrane transporter activity Enables the transfer of a glucosylglycerol from one side of a membrane to the other. A glucosylglycerol is an alpha-D-glucopyranosyl-alpha-(1,2)-glycerol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905450 biolink:NamedThing negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis Any process that stops, prevents or reduces the frequency, rate or extent of Fc-gamma receptor signaling pathway involved in phagocytosis. tmpzr1t_l9r_go_relaxed.owl downregulation of Fcgamma receptor-mediated phagocytosis|down regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|down-regulation of IgG-mediated phagocytosis|negative regulation of Fc gamma receptor-dependent phagocytosis|inhibition of IgG-mediated phagocytosis|negative regulation of Fcgamma receptor-mediated phagocytosis|down regulation of IgG-mediated phagocytosis|down regulation of Fc gamma receptor-dependent phagocytosis|down-regulation of Fc gamma receptor-dependent phagocytosis|down regulation of Fcgamma receptor-mediated phagocytosis|downregulation of Fc-gamma receptor signaling pathway involved in phagocytosis|down-regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|inhibition of Fcgamma receptor-mediated phagocytosis|downregulation of IgG-mediated phagocytosis|negative regulation of IgG-mediated phagocytosis|downregulation of Fc-gamma receptor signalling pathway involved in phagocytosis|inhibition of Fc gamma receptor-dependent phagocytosis|inhibition of Fc-gamma receptor signaling pathway involved in phagocytosis|down regulation of Fc-gamma receptor signaling pathway involved in phagocytosis|down-regulation of Fc-gamma receptor signaling pathway involved in phagocytosis|negative regulation of Fc-gamma receptor signalling pathway involved in phagocytosis|down-regulation of Fcgamma receptor-mediated phagocytosis|inhibition of Fc-gamma receptor signalling pathway involved in phagocytosis|downregulation of Fc gamma receptor-dependent phagocytosis sl 2016-09-15T19:41:58Z biological_process owl:Class GO:0019579 biolink:NamedThing aldaric acid catabolic process The chemical reactions and pathways resulting in the breakdown of aldaric acid, any dicarboxylic acid formed by oxidation of by the terminal groups of an aldose to carboxyl group. tmpzr1t_l9r_go_relaxed.owl aldaric acid degradation|aldaric acid breakdown|aldaric acid catabolism biological_process owl:Class GO:0006069 biolink:NamedThing ethanol oxidation An ethanol metabolic process in which ethanol is converted to acetyl-CoA via acetaldehyde and acetate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904017 biolink:NamedThing cellular response to Thyroglobulin triiodothyronine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroglobulin triiodothyronine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T19:34:13Z biological_process owl:Class GO:2001229 biolink:NamedThing negative regulation of response to gamma radiation Any process that stops, prevents or reduces the frequency, rate or extent of response to gamma radiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of response to gamma-ray photon|negative regulation of response to gamma ray yaf 2011-11-20T04:51:14Z biological_process owl:Class GO:0071276 biolink:NamedThing cellular response to cadmium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to cadmium mah 2009-12-10T03:54:49Z biological_process owl:Class GO:2001063 biolink:NamedThing glucomannan binding Binding to glucomannan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T10:29:45Z molecular_function owl:Class GO:0010297 biolink:NamedThing heteropolysaccharide binding Binding to a heteropolysaccharide, a glycan composed of more than one type of monosaccharide residue. tmpzr1t_l9r_go_relaxed.owl heteroglycan binding molecular_function owl:Class GO:1902390 biolink:NamedThing regulation of N-terminal peptidyl-serine acetylation Any process that modulates the frequency, rate or extent of N-terminal peptidyl-serine acetylation. tmpzr1t_l9r_go_relaxed.owl al 2013-09-11T14:46:45Z biological_process owl:Class GO:0044508 biolink:NamedThing glucagon-like peptide 1 receptor activity Combining with glucagon-like peptide 1 and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T04:50:25Z molecular_function owl:Class GO:1900487 biolink:NamedThing regulation of [2Fe-2S] cluster assembly Any process that modulates the frequency, rate or extent of [2Fe-2S] cluster assembly. tmpzr1t_l9r_go_relaxed.owl regulation of [2Fe-2S] cluster biosynthetic process|regulation of 2Fe-2S cluster assembly tt 2012-05-02T01:22:22Z biological_process owl:Class GO:1990359 biolink:NamedThing stress response to zinc ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by a zinc ion stimulus. tmpzr1t_l9r_go_relaxed.owl stress response to zinc|response to zinc toxicity|response to zinc ion stress kmv 2014-04-14T15:54:05Z biological_process owl:Class GO:0010043 biolink:NamedThing response to zinc ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to zinc biological_process owl:Class GO:0120242 biolink:NamedThing 2-iminobutanoate deaminase activity Catalysis of the reaction: 2-iminobutanoate + H2O = 2-oxobutanoate + NH4(+). tmpzr1t_l9r_go_relaxed.owl 2-iminobutanoate/2-iminopropanoate deaminase https://github.com/geneontology/go-ontology/issues/19832 MetaCyc:RXN-15123|RHEA:39975|KEGG_REACTION:R11098 krc 2020-07-29T18:07:00Z molecular_function owl:Class GO:0043828 biolink:NamedThing tRNA 2-selenouridine synthase activity Catalysis of the reaction: 5-methylaminomethyl-2-thiouridine + selenophosphate = 5-methylaminomethyl-2-selenouridine + phosphate (at the wobble position in tRNA). tmpzr1t_l9r_go_relaxed.owl EC:2.9.1.3|RHEA:42716|MetaCyc:RXN0-2281 molecular_function owl:Class GO:0004115 biolink:NamedThing 3',5'-cyclic-AMP phosphodiesterase activity Catalysis of the reaction: adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl 3',5'-cyclic-AMP-specific phosphodiesterase activity|cAMP-specific phosphodiesterase activity|adenosine 3',5'-cyclophosphate-specific phosphodiesterase activity|cyclic AMP-specific phosphodiesterase activity|3',5' cAMP-specific phosphodiesterase activity|3',5'-cAMP-specific phosphodiesterase activity MetaCyc:RXN0-5038|RHEA:25277|Reactome:R-HSA-9644869|Reactome:R-HSA-111962|Reactome:R-HSA-9629675|Reactome:R-HSA-418553|EC:3.1.4.53|Reactome:R-HSA-9705507 molecular_function owl:Class GO:1903696 biolink:NamedThing protein localization to horsetail-astral microtubule array A process in which a protein is transported to, or maintained in, a location within a horsetail-astral microtubule array. tmpzr1t_l9r_go_relaxed.owl protein localisation to horsetail-astral microtubule array|protein localisation in horsetail-astral microtubule array|protein localization in horsetail-astral microtubule array mah 2014-12-03T10:58:18Z biological_process owl:Class GO:0072699 biolink:NamedThing protein localization to cortical microtubule cytoskeleton A process in which a protein is transported to, or maintained at, a location within the cortical microtubule cytoskeleton. tmpzr1t_l9r_go_relaxed.owl protein localisation to cortical microtubule cytoskeleton mah 2012-04-11T01:23:36Z biological_process owl:Class GO:0052643 biolink:NamedThing chlorophyllide metabolic process The chemical reactions and pathways involving chlorophyllides, any chlorophyll lacking the terpenoid side chain such as phytyl or farnesyl. tmpzr1t_l9r_go_relaxed.owl chlorophyllide metabolism biological_process owl:Class GO:0005751 biolink:NamedThing mitochondrial respiratory chain complex IV A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2). tmpzr1t_l9r_go_relaxed.owl GO:0005752 cellular_component owl:Class GO:0045277 biolink:NamedThing respiratory chain complex IV A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2). tmpzr1t_l9r_go_relaxed.owl electron transport complex IV|cytochrome c oxidase complex GO:0045287 cellular_component owl:Class GO:0110098 biolink:NamedThing positive regulation of calcium import into the mitochondrion Any process that activates or increases the frequency, rate or extent of calcium import into the mitochondrion. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-28T00:39:13Z biological_process owl:Class GO:0003062 biolink:NamedThing regulation of heart rate by chemical signal The regulation of the rate of heart contraction mediated by chemical signaling, hormonal, autocrine or paracrine. tmpzr1t_l9r_go_relaxed.owl chemical signal regulation of heart contraction rate|chemical cardiac chronotropy|chemical signal regulation of heart rate biological_process owl:Class GO:0051614 biolink:NamedThing inhibition of serotonin uptake Any process that prevents the activation of the directed movement of serotonin into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of 5-hydroxytryptamine uptake|inhibition of 5-HT uptake|inhibition of 5HT uptake|inhibition of serotonin import biological_process owl:Class GO:0052822 biolink:NamedThing DNA-3-methylguanine glycosylase activity Catalysis of the reaction: DNA containing 3-methylguanine + H2O = DNA with abasic site + 3-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylguanine and the deoxyribose sugar to remove the 3-methylguanine, leaving an abasic site. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleate 3-methylguanine glycosidase I|3-methylguanine DNA glycosylase I|alkylated-DNA glycohydrolase (releasing methyladenine and methylguanine)|DNA glycosidase I activity MetaCyc:3.2.2.21-RXN|EC:3.2.2.21 ai 2011-10-28T02:28:19Z molecular_function owl:Class GO:0070878 biolink:NamedThing primary miRNA binding Binding to a primary microRNA (pri-miRNA) transcript, an RNA molecule that is processed into a short hairpin-shaped structure called a pre-miRNA and finally into a functional miRNA. Both double-stranded and single-stranded regions of a pri-miRNA are required for binding. tmpzr1t_l9r_go_relaxed.owl pri-miRNA binding|primary microRNA binding mah 2009-08-20T04:11:36Z molecular_function owl:Class GO:0061120 biolink:NamedThing regulation of positive chemotaxis to cAMP by DIF-1 Any process that modulates the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-1. DIF-1 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:10:20Z biological_process owl:Class GO:0008208 biolink:NamedThing C21-steroid hormone catabolic process The chemical reactions and pathways resulting in the breakdown of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones. tmpzr1t_l9r_go_relaxed.owl C21-steroid hormone degradation|C21-steroid hormone breakdown|C21-steroid hormone catabolism biological_process owl:Class GO:0062047 biolink:NamedThing pipecolic acid N-hydroxylase Catalysis of the reaction: L-pipecolic acid + NAD(P)H + O2 + H+ = N-hydroxypipecolic acid + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-11T12:17:15Z molecular_function owl:Class GO:0072237 biolink:NamedThing metanephric proximal tubule development The process whose specific outcome is the progression of the metanephric proximal tubule over time, from its formation to the mature structure. The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:46:54Z biological_process owl:Class GO:0001582 biolink:NamedThing detection of chemical stimulus involved in sensory perception of sweet taste The series of events required for a sweet taste stimulus to be received and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of sweet taste, sensory transduction of chemical stimulus|sensory transduction of sweet taste|sensory detection of chemical stimulus during perception of sweet taste|sensory transduction of chemical stimulus during perception of sweet taste|perception of sweet taste, detection of chemical stimulus|sensory detection of sweet taste|sweet taste detection biological_process owl:Class GO:0030933 biolink:NamedThing chloroplast ADPG pyrophosphorylase complex An ADPG pyrophosphorylase complex found in the chloroplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019875 biolink:NamedThing 6-aminohexanoate-dimer hydrolase activity Catalysis of the reaction: N-(6-aminohexanoyl)-6-aminohexanoate + H2O = 2 6-aminohexanoate. tmpzr1t_l9r_go_relaxed.owl 6-aminohexanoic acid oligomer hydrolase activity|N-(6-aminohexanoyl)-6-aminohexanoate amidohydrolase activity UM-BBD_enzymeID:e0673|MetaCyc:RXN-3962|EC:3.5.1.46|RHEA:21364 molecular_function owl:Class GO:0046332 biolink:NamedThing SMAD binding Binding to a SMAD signaling protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031949 biolink:NamedThing regulation of glucocorticoid catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046970 biolink:NamedThing NAD-dependent histone deacetylase activity (H4-K16 specific) Catalysis of the reaction: histone H4 N6-acetyl-L-lysine (position 16) + H2O = histone H4 L-lysine (position 16) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 16 of the histone H4 protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006659 biolink:NamedThing phosphatidylserine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine biosynthesis|phosphatidylserine formation|phosphatidylserine synthesis|phosphatidylserine anabolism biological_process owl:Class GO:1900020 biolink:NamedThing positive regulation of protein kinase C activity Any process that activates or increases the frequency, rate or extent of protein kinase C activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of PKC activity|positive regulation of PKC|up regulation of PKC|up regulation of PKC activity bf 2012-01-11T03:50:55Z biological_process owl:Class GO:0034109 biolink:NamedThing homotypic cell-cell adhesion The attachment of a cell to a second cell of the identical type via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl Note that this term is not synonymous with 'homophilic cell adhesion ; GO:0007156'; the process may occur by homophilic or heterophilic mechanisms. biological_process owl:Class GO:1904631 biolink:NamedThing response to glucoside Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucoside stimulus. tmpzr1t_l9r_go_relaxed.owl response to glucosides sl 2015-08-28T14:01:31Z biological_process owl:Class GO:1900873 biolink:NamedThing pentadec-1-ene biosynthetic process The chemical reactions and pathways resulting in the formation of pentadec-1-ene. tmpzr1t_l9r_go_relaxed.owl pentadec-1-ene formation|pentadec-1-ene synthesis|pentadec-1-ene biosynthesis|pentadec-1-ene anabolism tt 2012-06-13T01:45:45Z biological_process owl:Class GO:0016437 biolink:NamedThing tRNA cytidylyltransferase activity Catalysis of the reaction: CTP + tRNA(n) = diphosphate + tRNA(n+1). tmpzr1t_l9r_go_relaxed.owl -C-C-A pyrophosphorylase|CTP:tRNA cytidylyltransferase activity|transfer ribonucleic adenylyl (cytidylyl) transferase|transfer ribonucleate nucleotidyltransferase|tRNA CCA-diphosphorylase activity|ATP (CTP):tRNA nucleotidyltransferase|transfer RNA adenylyltransferase|transfer ribonucleate adenylyltransferase|tRNA CCA-pyrophosphorylase activity|transfer ribonucleate cytidylyltransferase|ATP(CTP)-tRNA nucleotidyltransferase|transfer-RNA nucleotidyltransferase|transfer ribonucleic acid nucleotidyl transferase|ATP(CTP):tRNA nucleotidyltransferase activity|ribonucleic cytidylyltransferase|ribonucleic cytidylic cytidylic adenylic pyrophosphorylase|transfer ribonucleic-terminal trinucleotide nucleotidyltransferase|CTP(ATP):tRNA nucleotidyltransferase|tRNA adenylyl(cytidylyl)transferase EC:2.7.7.72|MetaCyc:TRNA-CYTIDYLYLTRANSFERASE-RXN molecular_function owl:Class GO:0042429 biolink:NamedThing serotonin catabolic process The chemical reactions and pathways resulting in the breakdown of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. tmpzr1t_l9r_go_relaxed.owl serotonin breakdown|serotonin catabolism|serotonin degradation biological_process owl:Class GO:0060487 biolink:NamedThing lung epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell that contributes to the epithelium of the lung. tmpzr1t_l9r_go_relaxed.owl pulmonary epithelial cell differentiation biological_process owl:Class GO:0050251 biolink:NamedThing retinol isomerase activity Catalysis of the reaction: all-trans-retinol = 11-cis-retinol. tmpzr1t_l9r_go_relaxed.owl all-trans-retinol isomerase activity|all-trans-retinol 11-cis-trans-isomerase activity RHEA:19141|KEGG_REACTION:R02369|Reactome:R-HSA-2465926|MetaCyc:RETINOL-ISOMERASE-RXN molecular_function owl:Class GO:0009951 biolink:NamedThing polarity specification of dorsal/ventral axis Any process resulting in the establishment of polarity along the dorsal/ventral axis. tmpzr1t_l9r_go_relaxed.owl polarity specification of dorsoventral axis|polarity specification of dorsal-ventral axis biological_process owl:Class GO:0065001 biolink:NamedThing specification of axis polarity The pattern specification process in which the polarity of a body or organ axis is established and maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102014 biolink:NamedThing beta-D-galactose-importing ATPase activity Catalysis of the reaction: ATP(4-) + beta-D-galactoside + H2O <=> ADP(3-) + hydrogenphosphate + beta-D-galactoside + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:30011|MetaCyc:ABC-18-RXN molecular_function owl:Class GO:0015407 biolink:NamedThing ABC-type monosaccharide transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + monosaccharide(out) = ADP + phosphate + monosaccharide(in). Ribose, xylose, arabinose, galactose and methylgalactoside are imported. tmpzr1t_l9r_go_relaxed.owl monosaccharide-transporting ATPase activity|monosaccharide ABC transporter|ATPase-coupled monosaccharide transmembrane transporter activity|ATP-dependent monosaccharide transmembrane transporter activity|monosaccharide-importing ATPase activity https://github.com/geneontology/go-ontology/issues/17289 MetaCyc:3.6.3.17-RXN|EC:7.5.2.- molecular_function owl:Class GO:0008045 biolink:NamedThing motor neuron axon guidance The process in which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl motor axon guidance|motoneuron axon guidance|motor axon pathfinding biological_process owl:Class GO:1901781 biolink:NamedThing p-cumate metabolic process The chemical reactions and pathways involving p-cumate. tmpzr1t_l9r_go_relaxed.owl p-cumate metabolism yaf 2013-01-16T10:40:28Z biological_process owl:Class GO:0102789 biolink:NamedThing UDP-D-glucose:cyanidin 5-O-beta-D-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cyanidin = H+ + cyanidin 5-O-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8005 molecular_function owl:Class GO:0004980 biolink:NamedThing melanocyte-stimulating hormone receptor activity Combining with melanocyte-stimulating hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl MSH receptor activity|melanocyte stimulating hormone receptor activity|melanophore-stimulating hormone receptor activity|MSHR activity molecular_function owl:Class GO:0004977 biolink:NamedThing melanocortin receptor activity Combining with melanocortin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019760 biolink:NamedThing glucosinolate metabolic process The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. tmpzr1t_l9r_go_relaxed.owl glucosinolate metabolism biological_process owl:Class GO:0033049 biolink:NamedThing clavulanic acid metabolic process The chemical reactions and pathways involving clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid. tmpzr1t_l9r_go_relaxed.owl clavulanic acid metabolism biological_process owl:Class GO:0018249 biolink:NamedThing protein dehydration The removal of a water group from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid dehydration biological_process owl:Class GO:0030932 biolink:NamedThing amyloplast ADPG pyrophosphorylase complex An ADPG pyrophosphorylase complex found in the amyloplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010437 biolink:NamedThing 9,10 (9', 10')-carotenoid-cleaving dioxygenase activity Catalysis of the oxidative cleavage of carotenoids at the (9, 10) and/or (9', 10') double bond. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010436 biolink:NamedThing carotenoid dioxygenase activity Catalysis of the oxidative cleavage of carotenoids. tmpzr1t_l9r_go_relaxed.owl carotenoid-cleaving dioxygenase molecular_function owl:Class GO:0060714 biolink:NamedThing labyrinthine layer formation The developmental process pertaining to the initial formation of the labyrinthine layer of the placenta. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-10T08:13:14Z biological_process owl:Class GO:0050309 biolink:NamedThing sugar-terminal-phosphatase activity Catalysis of the reaction: H2O + sugar phosphorylated on the terminal carbon = a sugar + phosphate. tmpzr1t_l9r_go_relaxed.owl sugar-omega-phosphate phosphohydrolase activity|xylitol-5-phosphatase activity EC:3.1.3.58 molecular_function owl:Class GO:0060022 biolink:NamedThing hard palate development The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes. tmpzr1t_l9r_go_relaxed.owl palatum durum development biological_process owl:Class GO:0048577 biolink:NamedThing negative regulation of short-day photoperiodism, flowering Any process that stops, prevents or reduces short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. tmpzr1t_l9r_go_relaxed.owl downregulation of short-day photoperiodism, flowering|down-regulation of short-day photoperiodism, flowering|down regulation of short-day photoperiodism, flowering|inhibition of short-day photoperiodism, flowering biological_process owl:Class GO:0071056 biolink:NamedThing alpha9-beta1 integrin-ADAM15 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM15. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM15 complex mah 2009-11-03T03:59:49Z cellular_component owl:Class GO:0039514 biolink:NamedThing suppression by virus of host JAK-STAT cascade Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the JAK-STAT signal cascade in the host organism. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host JAK-STAT cascade|negative regulation by virus of host JAK-STAT cascade|downregulation by virus of host JAK-STAT cascade|down-regulation by virus of host JAK-STAT cascade bf 2011-06-16T02:48:03Z biological_process owl:Class GO:0043006 biolink:NamedThing activation of phospholipase A2 activity by calcium-mediated signaling A series of molecular signals that leads to the upregulation of calcium-dependent phospholipase A2 activity in response to the signal. tmpzr1t_l9r_go_relaxed.owl calcium-dependent phospholipase A2 activation|calcium-dependent activation of phospholipase A2|activation of phospholipase A2 activity by calcium-mediated signalling biological_process owl:Class GO:0032431 biolink:NamedThing activation of phospholipase A2 activity Any process that initiates the activity of the inactive enzyme phospholipase A2. tmpzr1t_l9r_go_relaxed.owl phospholipase A2 activation biological_process owl:Class GO:0061783 biolink:NamedThing peptidoglycan muralytic activity A catalytic activity that contributes to the degradation of peptidoglycan. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-07T15:47:49Z molecular_function owl:Class GO:0052820 biolink:NamedThing DNA-1,N6-ethenoadenine N-glycosylase activity Catalysis of the reaction: DNA with 1-N6-ethenoadenine + H2O = DNA with abasic site + 1-N6-ethenoadenine. This reaction is the removal of 1,N6-ethenoadenine by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. tmpzr1t_l9r_go_relaxed.owl 1,N6-ethenoadenine glycosylase activity|1,N(6)-ethenoadenine N-glycosylase activity 2011-10-28T01:17:21Z molecular_function owl:Class GO:0097054 biolink:NamedThing L-glutamate biosynthetic process The chemical reactions and pathways resulting in the formation of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl L-glutamate biosynthesis|L-glutamate anabolism|L-glutamate formation|L-glutamate synthesis pr 2011-05-24T04:30:38Z biological_process owl:Class GO:0090052 biolink:NamedThing regulation of pericentric heterochromatin assembly Any process that modulates the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl regulation of chromatin silencing at centromere https://github.com/geneontology/go-ontology/issues/19112 tb 2009-08-07T10:47:41Z biological_process owl:Class GO:0044487 biolink:NamedThing envenomation resulting in modulation of transmission of nerve impulse in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of the transmission of nerve impulses in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in modulation of conduction of nerve impulse in other organism jl 2012-01-26T05:01:54Z biological_process owl:Class GO:1900900 biolink:NamedThing negative regulation of heptadecane metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of heptadecane metabolic process. tmpzr1t_l9r_go_relaxed.owl downregulation of heptadecane metabolism|inhibition of heptadecane metabolism|down-regulation of heptadecane metabolic process|down-regulation of heptadecane metabolism|inhibition of heptadecane metabolic process|down regulation of heptadecane metabolism|negative regulation of heptadecane metabolism|downregulation of heptadecane metabolic process|down regulation of heptadecane metabolic process tt 2012-06-13T03:30:25Z biological_process owl:Class GO:0008756 biolink:NamedThing o-succinylbenzoate-CoA ligase activity Catalysis of the reaction: 2-succinylbenzoate + ATP + CoA = 2-succinylbenzoyl-CoA + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl OSB-CoA synthetase activity|o-succinylbenzoyl-coenzyme A synthetase activity|o-succinylbenzoyl-CoA synthetase activity|2-succinylbenzoate:CoA ligase (AMP-forming)|o-succinylbenzoate:CoA ligase (AMP-forming) MetaCyc:O-SUCCINYLBENZOATE-COA-LIG-RXN|KEGG_REACTION:R04030|EC:6.2.1.26|RHEA:17009 molecular_function owl:Class GO:0006270 biolink:NamedThing DNA replication initiation The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. tmpzr1t_l9r_go_relaxed.owl DNA endoreduplication initiation|DNA re-replication initiation|DNA-dependent DNA replication initiation GO:0042024 biological_process owl:Class GO:0018515 biolink:NamedThing pimeloyl-CoA dehydrogenase activity Catalysis of the reaction: NAD(+) + pimelyl-CoA = 2,3-didehydropimeloyl-CoA + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl pimeloyl-CoA:NAD+ oxidoreductase activity MetaCyc:1.3.1.62-RXN|KEGG_REACTION:R05311|UM-BBD_reactionID:r0194|EC:1.3.1.62|RHEA:19665 molecular_function owl:Class GO:1904267 biolink:NamedThing negative regulation of Schwann cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of Schwann cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl inhibition of Schwann cell chemotaxis|down-regulation of Schwann cell chemotaxis|down regulation of Schwann cell chemotaxis|downregulation of Schwann cell chemotaxis sl 2015-05-28T17:47:48Z biological_process owl:Class GO:0000993 biolink:NamedThing RNA polymerase II complex binding Binding to an RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits. tmpzr1t_l9r_go_relaxed.owl RNAP II core binding|RNA polymerase II core binding krc 2010-08-11T03:57:27Z molecular_function owl:Class GO:1901256 biolink:NamedThing regulation of macrophage colony-stimulating factor production Any process that modulates the frequency, rate or extent of macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl regulation of M-CSF production vk 2012-08-10T08:28:08Z biological_process owl:Class GO:0002162 biolink:NamedThing dystroglycan binding Binding to dystroglycan, a glycoprotein found in non-muscle tissues as well as in muscle tissues, often in association with dystrophin. The native dystroglycan cleaved into two non-covalently associated subunits, alpha (N-terminal) and beta (C-terminal). tmpzr1t_l9r_go_relaxed.owl beta-dystroglycan binding|alpha-dystroglycan binding hjd 2010-02-22T02:17:58Z GO:0002166|GO:0002163 molecular_function owl:Class GO:0030152 biolink:NamedThing bacteriocin biosynthetic process The chemical reactions and pathways resulting in the formation of a bacteriocin, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary. tmpzr1t_l9r_go_relaxed.owl bacteriocin biosynthesis|bacteriocin anabolism|bacteriocin formation|bacteriocin synthesis biological_process owl:Class GO:0046224 biolink:NamedThing bacteriocin metabolic process The chemical reactions and pathways involving bacteriocins, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary. tmpzr1t_l9r_go_relaxed.owl bacteriocin metabolism biological_process owl:Class GO:0060059 biolink:NamedThing embryonic retina morphogenesis in camera-type eye The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902975 biolink:NamedThing mitotic DNA replication initiation Any DNA replication initiation involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication initiation involved in mitotic cell cycle DNA replication jl 2014-05-06T15:21:11Z biological_process owl:Class GO:0047386 biolink:NamedThing fructose-2,6-bisphosphate 6-phosphatase activity Catalysis of the reaction: beta-D-fructose 2,6-bisphosphate + H(2)O = beta-D-fructofuranose 2-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose-2,6-bisphosphate 6-phosphohydrolase activity|beta-D-fructose-2,6-bisphosphate 6-phosphohydrolase activity|fructose 2,6-bisphosphate-6-phosphohydrolase activity|fructose-2,6-bisphosphate 6-phosphohydrolase activity RHEA:13333|KEGG_REACTION:R02730|EC:3.1.3.54|MetaCyc:3.1.3.54-RXN molecular_function owl:Class GO:1900639 biolink:NamedThing positive regulation of asperfuranone biosynthetic process Any process that activates or increases the frequency, rate or extent of asperfuranone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of asperfuranone biosynthesis|positive regulation of asperfuranone anabolism|upregulation of asperfuranone biosynthetic process|upregulation of asperfuranone synthesis|up regulation of asperfuranone formation|upregulation of asperfuranone anabolism|activation of asperfuranone biosynthesis|positive regulation of asperfuranone biosynthesis|activation of asperfuranone synthesis|up regulation of asperfuranone biosynthesis|up regulation of asperfuranone synthesis|up-regulation of asperfuranone formation|upregulation of asperfuranone formation|positive regulation of asperfuranone synthesis|activation of asperfuranone biosynthetic process|up regulation of asperfuranone anabolism|up regulation of asperfuranone biosynthetic process|up-regulation of asperfuranone anabolism|positive regulation of asperfuranone formation|upregulation of asperfuranone biosynthesis|activation of asperfuranone anabolism|up-regulation of asperfuranone biosynthetic process|up-regulation of asperfuranone synthesis|activation of asperfuranone formation di 2012-05-22T03:50:24Z biological_process owl:Class GO:0004593 biolink:NamedThing pantothenase activity Catalysis of the reaction: (R)-pantothenate + H(2)O = (R)-pantoate + beta-alanine. tmpzr1t_l9r_go_relaxed.owl pantothenate amidohydrolase activity|(R)-pantothenate amidohydrolase activity|pantothenate hydrolase activity RHEA:12448|EC:3.5.1.22|KEGG_REACTION:R02474|MetaCyc:PANTOTHENASE-RXN molecular_function owl:Class GO:0039639 biolink:NamedThing suppression by virus of host cell lysis in response to superinfection The prevention or delay of host cell lysis by a pre-existing virus in response to a subsequent infection of the host cell by second virus. tmpzr1t_l9r_go_relaxed.owl lysis inhibition|suppression by virus of host cell lysis in response to superinfecting virus bf 2012-08-17T10:42:27Z biological_process owl:Class GO:0098586 biolink:NamedThing cellular response to virus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus. tmpzr1t_l9r_go_relaxed.owl dos 2014-01-24T14:54:08Z biological_process owl:Class GO:0003832 biolink:NamedThing beta-alanyl-dopamine hydrolase activity Catalysis of the reaction: N-beta-alanyl dopamine + H2O = dopamine + beta-alanine. tmpzr1t_l9r_go_relaxed.owl N-beta-alanyl-dopamine hydrolase activity|NBAD hydrolase activity molecular_function owl:Class GO:1900335 biolink:NamedThing positive regulation of methane biosynthetic process from 3-(methylthio)propionic acid Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from 3-(methylthio)propionic acid. tmpzr1t_l9r_go_relaxed.owl upregulation of methane biosynthetic process from 3-(methylthio)propionic acid|up-regulation of methane biosynthetic process from 3-(methylthio)propionic acid|up regulation of methane biosynthetic process from 3-(methylthio)propionic acid|activation of methane biosynthetic process from 3-(methylthio)propionic acid tt 2012-04-06T01:56:31Z biological_process owl:Class GO:1900064 biolink:NamedThing positive regulation of peroxisome organization Any process that activates or increases the frequency, rate or extent of peroxisome organization. tmpzr1t_l9r_go_relaxed.owl activation of peroxisome organization|positive regulation of peroxisome organization and biogenesis|activation of peroxisome organisation|up regulation of peroxisome organization|upregulation of peroxisome-assembly ATPase activity|positive regulation of peroxisome-assembly ATPase activity|up-regulation of peroxisome organisation|up-regulation of peroxisome organization|activation of peroxisome organization and biogenesis|up-regulation of peroxisome organization and biogenesis|up-regulation of peroxisome-assembly ATPase activity|up regulation of peroxisome organisation|upregulation of peroxisome organisation|positive regulation of peroxisome organisation|up regulation of peroxisome-assembly ATPase activity|upregulation of peroxisome organization|activation of peroxisome-assembly ATPase activity|upregulation of peroxisome organization and biogenesis|up regulation of peroxisome organization and biogenesis dph 2012-01-26T01:49:09Z biological_process owl:Class GO:0070006 biolink:NamedThing metalloaminopeptidase activity Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 molecular_function owl:Class GO:0015024 biolink:NamedThing glucuronate-2-sulfatase activity Catalysis of the hydrolysis of the 2-sulfate groups of the 2-O-sulfo-D-glucuronate residues of chondroitin sulfate, heparin and heparitin sulfate. tmpzr1t_l9r_go_relaxed.owl glucurono-2-sulfatase activity|chondro-2-sulfatase activity|glucuronate-2-sulphatase activity|polysaccharide-2-O-sulfo-D-glucuronate 2-sulfohydrolase activity EC:3.1.6.18|MetaCyc:3.1.6.18-RXN molecular_function owl:Class GO:0010294 biolink:NamedThing abscisic acid glucosyltransferase activity Catalysis of the reaction: (+)-abscisate + UDP-D-glucose = abscisic acid glucose ester + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:31031|MetaCyc:RXN-8155 molecular_function owl:Class GO:0071179 biolink:NamedThing MAML3-RBP-Jkappa-ICN1 complex A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML3-RBP-Jkappa-Notch1 complex mah 2009-11-23T02:50:39Z cellular_component owl:Class GO:0102988 biolink:NamedThing 9,12-cis-hexadecadienoic acid delta 15 desaturase activity Catalysis of the reaction: (9Z,12Z)-hexadecadienoyl-CoA + O2 + a reduced electron acceptor <=> 9,12,15-cis-hexadecatrienoyl-CoA + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:46232|MetaCyc:RXN-9617 molecular_function owl:Class GO:1905681 biolink:NamedThing negative regulation of innate immunity memory response Any process that stops, prevents or reduces the frequency, rate or extent of innate immunity memory response. tmpzr1t_l9r_go_relaxed.owl inhibition of innate immunity memory response|downregulation of innate immunity memory response|down regulation of innate immunity memory response|down-regulation of innate immunity memory response tb 2016-11-11T22:25:29Z biological_process owl:Class GO:0005136 biolink:NamedThing interleukin-4 receptor binding Binding to an interleukin-4 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-4 receptor ligand|IL-4 molecular_function owl:Class GO:0016258 biolink:NamedThing N-glycan diversification The generation, in the Golgi apparatus, of side chain diversity from high mannose Man5GlcNAc2-Asn N-glycans by specific glycosyltransferases and glycosidases. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045464 biolink:NamedThing R8 cell fate specification The process in which a cell becomes capable of differentiating autonomously into an R8 cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043704 biolink:NamedThing photoreceptor cell fate specification The process in which a cell becomes capable of differentiating autonomously into a photoreceptor cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102984 biolink:NamedThing sulfoacetaldehyde dehydrogenase activity Catalysis of the reaction: sulfonatoacetaldehyde + H2O + NAD <=> sulfonatoacetate + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:25637|MetaCyc:RXN-9592|EC:1.2.1.73 molecular_function owl:Class GO:0046799 biolink:NamedThing recruitment of helicase-primase complex to DNA lesions The recruitment of the helicase-primase complex to viral DNA lesions during viral DNA repair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060703 biolink:NamedThing deoxyribonuclease inhibitor activity Binds to and stops, prevents or reduces the activity of deoxyribonuclease. tmpzr1t_l9r_go_relaxed.owl DNase inhibitor activity dph 2009-06-08T03:00:35Z molecular_function owl:Class GO:0140721 biolink:NamedThing nuclease inhibitor activity Binds to and modulates the activity of a nuclease. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16423 pg 2021-11-16T09:09:45Z molecular_function owl:Class GO:0097133 biolink:NamedThing cyclin D3-CDK6 complex A protein complex consisting of cyclin D3 and cyclin-dependent kinase 6 (CDK6). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:57:41Z cellular_component owl:Class GO:0071506 biolink:NamedThing cellular response to mycophenolic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycophenolic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to mycophenolate mah 2009-12-18T03:47:25Z biological_process owl:Class GO:0002519 biolink:NamedThing natural killer cell tolerance induction Tolerance induction of natural killer cells. tmpzr1t_l9r_go_relaxed.owl NK cell tolerance induction biological_process owl:Class GO:0035907 biolink:NamedThing dorsal aorta development The progression of the dorsal aorta over time, from its initial formation to the mature structure. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:07:01Z biological_process owl:Class GO:0140375 biolink:NamedThing immune receptor activity Receiving a signal and transmitting it in a cell to initiate an immune response. tmpzr1t_l9r_go_relaxed.owl pg 2019-10-18T14:11:15Z molecular_function owl:Class GO:2000232 biolink:NamedThing regulation of rRNA processing Any process that modulates the frequency, rate or extent of rRNA processing. tmpzr1t_l9r_go_relaxed.owl regulation of 35S primary transcript processing mah 2010-11-10T12:11:29Z biological_process owl:Class GO:0071514 biolink:NamedThing genetic imprinting Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules by a mechanism that is mediated by DNA, is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence. tmpzr1t_l9r_go_relaxed.owl DNA imprinting mah 2010-01-06T11:56:31Z biological_process owl:Class GO:0034424 biolink:NamedThing Vps55/Vps68 complex A membrane-associated protein complex that is required for a late stage of endosomal transport. In budding yeast, this complex consists of Vps55p and Vps68p proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070585 biolink:NamedThing protein localization to mitochondrion A process in which a protein is transported to, or maintained in, a location within the mitochondrion. tmpzr1t_l9r_go_relaxed.owl protein localization in mitochondrion|protein localisation in mitochondrion mah 2009-04-24T02:31:18Z biological_process owl:Class GO:0001527 biolink:NamedThing microfibril Extracellular matrix components occurring independently or along with elastin. Thought to have force-bearing functions in tendon. In addition to fibrillins, microfibrils may contain other associated proteins. tmpzr1t_l9r_go_relaxed.owl extended fibrils|fibrillin cellular_component owl:Class GO:0070667 biolink:NamedThing negative regulation of mast cell proliferation Any process that stops, prevents or reduces the rate or extent of mast cell proliferation. tmpzr1t_l9r_go_relaxed.owl inhibition of mast cell proliferation|downregulation of mast cell proliferation|down regulation of mast cell proliferation|down-regulation of mast cell proliferation mah 2009-05-28T05:45:11Z biological_process owl:Class GO:0045746 biolink:NamedThing negative regulation of Notch signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the Notch signaling pathway. tmpzr1t_l9r_go_relaxed.owl downregulation of Notch signaling pathway|negative regulation of N signalling pathway|negative regulation of Notch signalling pathway|down regulation of Notch signaling pathway|inhibition of Notch signaling pathway|negative regulation of N signaling pathway|down-regulation of Notch signaling pathway biological_process owl:Class GO:0000309 biolink:NamedThing nicotinamide-nucleotide adenylyltransferase activity Catalysis of the reaction: ATP + nicotinamide nucleotide = diphosphate + NAD+. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide pyrophosphorylase activity|adenosine triphosphate-nicotinamide mononucleotide transadenylase activity|NAD+ diphosphorylase activity|ATP:nicotinamide-nucleotide adenylyltransferase activity|diphosphopyridine nucleotide pyrophosphorylase activity|NMNAT activity|NAD+ pyrophosphorylase activity|NMN adenylyltransferase activity|ATP:NMN adenylyltransferase activity|nicotinamide mononucleotide adenylyltransferase activity|NAD(+) diphosphorylase activity|NAD(+) pyrophosphorylase activity MetaCyc:2.7.7.1-RXN|RHEA:21360|EC:2.7.7.1|Reactome:R-HSA-8939959 molecular_function owl:Class GO:1902019 biolink:NamedThing regulation of cilium-dependent cell motility Any process that modulates the frequency, rate or extent of cilium-dependent cell motility. tmpzr1t_l9r_go_relaxed.owl regulation of ciliary cell motility|regulation of cilium cell motility jl 2013-03-27T14:42:38Z biological_process owl:Class GO:0007405 biolink:NamedThing neuroblast proliferation The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron. tmpzr1t_l9r_go_relaxed.owl GO:0043350|GO:0043349 biological_process owl:Class GO:0072383 biolink:NamedThing plus-end-directed vesicle transport along microtubule The directed movement of a vesicle towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule plus-end-directed vesicle localization|microtubule plus-end-directed vesicle distribution mah 2010-12-01T04:24:51Z biological_process owl:Class GO:0075011 biolink:NamedThing positive regulation of germ tube formation Any process that activates, maintains or increases the frequency, rate or extent of germ tube formation on or near host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of germ tube formation on or near host biological_process owl:Class GO:2000528 biolink:NamedThing negative regulation of myeloid dendritic cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of myeloid dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-23T12:18:39Z biological_process owl:Class GO:0098929 biolink:NamedThing extrinsic component of spine apparatus membrane The component of the spine apparatus membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061193 biolink:NamedThing taste bud development The progression of the taste bud over time, from its formation to the mature state. The taste bud is a specialized area of the tongue that contains taste receptors. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T10:55:08Z biological_process owl:Class GO:0150044 biolink:NamedThing regulation of postsynaptic dense core vesicle exocytosis Any process that modulates the frequency, rate or extent of postsynaptic dense core vesicle exocytosis. tmpzr1t_l9r_go_relaxed.owl bc 2018-04-20T13:34:32Z biological_process owl:Class GO:0008863 biolink:NamedThing formate dehydrogenase (NAD+) activity Catalysis of the reaction: formate + NAD(+) = CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl NAD-formate dehydrogenase|NAD-linked formate dehydrogenase|formate:NAD+ oxidoreductase|formate hydrogenlyase|N-FDH|formate dehydrogenase (NAD)|NAD-dependent formate dehydrogenase|FDH II|formate benzyl-viologen oxidoreductase|formic hydrogen-lyase|formate-NAD oxidoreductase|FDH I|formic acid dehydrogenase EC:1.17.1.9|RHEA:15985|MetaCyc:1.2.1.2-RXN|KEGG_REACTION:R00519|UM-BBD_reactionID:r0103|MetaCyc:FORMATEDEHYDROG-RXN GO:0018476 molecular_function owl:Class GO:0033161 biolink:NamedThing mitogen-activated protein kinase kinase kinase kinase binding Binding to a mitogen-activated protein kinase kinase kinase kinase, a protein that can phosphorylate a MAP kinase kinase kinase. tmpzr1t_l9r_go_relaxed.owl MAPKKKK binding molecular_function owl:Class GO:0120135 biolink:NamedThing distal portion of axoneme The portion of the axoneme that is close to the tip of the cilium. tmpzr1t_l9r_go_relaxed.owl distal part of axoneme krc 2018-03-10T01:45:34Z cellular_component owl:Class GO:0004757 biolink:NamedThing sepiapterin reductase activity Catalysis of the reaction: 7,8-dihydrobiopterin + NADP+ = sepiapterin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydrobiopterin:NADP+ oxidoreductase activity Reactome:R-HSA-1475414|Reactome:R-HSA-1497869|MetaCyc:SEPIAPTERIN-REDUCTASE-RXN|RHEA:18953|EC:1.1.1.153 molecular_function owl:Class GO:1902559 biolink:NamedThing 3'-phospho-5'-adenylyl sulfate transmembrane transport The process in which 3'-phospho-5'-adenylyl sulfate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenosine 5'-phosphosulfate transmembrane transport mcc 2013-12-09T23:19:04Z biological_process owl:Class GO:0043905 biolink:NamedThing Ser-tRNA(Thr) hydrolase activity Catalysis of the hydrolysis of misacylated Ser-tRNA(Thr). tmpzr1t_l9r_go_relaxed.owl Ser-tRNAThr hydrolase activity EC:3.1.1.- molecular_function owl:Class GO:0035338 biolink:NamedThing long-chain fatty-acyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of a long-chain fatty-acyl-CoA any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more. tmpzr1t_l9r_go_relaxed.owl long-chain fatty-acyl-CoA synthesis|long-chain fatty-acyl-CoA anabolism|long-chain fatty-acyl-CoA biosynthesis|long-chain fatty acyl CoA biosynthetic process|long-chain fatty-acyl-CoA formation bf 2010-03-02T11:07:15Z biological_process owl:Class GO:0035336 biolink:NamedThing long-chain fatty-acyl-CoA metabolic process The chemical reactions and pathways involving long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acyl CoA metabolic process|long-chain fatty acyl-CoA metabolism bf 2010-03-02T11:01:43Z biological_process owl:Class GO:0060244 biolink:NamedThing negative regulation of cell proliferation involved in contact inhibition Any process that stops, prevents or reduces the rate or extent of cell proliferation in response to cell density. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903656 biolink:NamedThing regulation of type IV pilus biogenesis Any process that modulates the frequency, rate or extent of type IV pilus biogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of type IV fimbriae assembly|regulation of type IV fimbrium assembly|regulation of type IV fimbrium biogenesis|regulation of type IV fimbriae biogenesis|regulation of type IV fimbria assembly|regulation of type IV fimbria biogenesis|regulation of type IV pilus biosynthesis|regulation of type IV fimbrial assembly|regulation of type IV fimbrial biogenesis|regulation of TFP biogenesis|regulation of type 4 pilus biogenesis jl 2014-11-25T12:03:09Z biological_process owl:Class GO:0060491 biolink:NamedThing regulation of cell projection assembly Any process that modulates the rate, frequency, or extent of cell projection assembly. tmpzr1t_l9r_go_relaxed.owl regulation of cell projection formation biological_process owl:Class GO:1902685 biolink:NamedThing positive regulation of receptor localization to synapse Any process that activates or increases the frequency, rate or extent of receptor localization to synapse. tmpzr1t_l9r_go_relaxed.owl up-regulation of receptor localization to synapse|upregulation of receptor localisation to synapse|activation of receptor localization to synapse|up regulation of receptor localization to synapse|up-regulation of receptor localisation to synapse|upregulation of receptor localization to synapse|up regulation of receptor localisation to synapse|positive regulation of receptor localisation to synapse|activation of receptor localisation to synapse kmv 2014-02-07T17:38:51Z biological_process owl:Class GO:0002503 biolink:NamedThing peptide antigen assembly with MHC class II protein complex The binding of a peptide to the antigen binding groove of an MHC class II protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002501 biolink:NamedThing peptide antigen assembly with MHC protein complex The binding of a peptide to the antigen binding groove of an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099116 biolink:NamedThing tRNA 5'-end processing The process in which the 5' end of a pre-tRNA molecule is converted to that of a mature tRNA. tmpzr1t_l9r_go_relaxed.owl tRNA 5' processing biological_process owl:Class GO:1904373 biolink:NamedThing response to kainic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-18T22:42:52Z biological_process owl:Class GO:0072092 biolink:NamedThing ureteric bud invasion The process in which the ureteric bud grows along its axis and contributes to the formation of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T01:15:13Z biological_process owl:Class GO:0102799 biolink:NamedThing glucosinolate glucohydrolase activity Catalysis of the reaction: H2O + a glucosinolate = alpha-D-glucose + a thiohydroximate-O-sulfate. Glucosinolates are a subclass of thioglucosides. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.147|MetaCyc:RXN-8134 molecular_function owl:Class GO:1901216 biolink:NamedThing positive regulation of neuron death Any process that activates or increases the frequency, rate or extent of neuron death. tmpzr1t_l9r_go_relaxed.owl upregulation of neuron death|up regulation of neuron death|up-regulation of neuron cell death|activation of neuron death|upregulation of neuronal cell death|upregulation of neuron cell death|up-regulation of neuron death|activation of neuron cell death|positive regulation of neuron cell death|up-regulation of neuronal cell death|positive regulation of neuronal cell death|up regulation of neuronal cell death|up regulation of neuron cell death|activation of neuronal cell death rph 2012-08-02T09:58:15Z biological_process owl:Class GO:0044779 biolink:NamedThing meiotic spindle checkpoint signaling A signal transduction process that contributes to a cell cycle checkpoint that delays the metaphase/anaphase transition of a meiotic nuclear division until the spindle is correctly assembled and that the chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl intracellular signal transduction involved in meiotic spindle checkpoint|intracellular signal transduction pathway involved in meiotic spindle checkpoint|intracellular signaling pathway involved in meiotic spindle checkpoint|meiotic spindle checkpoint|intracellular signaling cascade involved in meiotic spindle checkpoint https://github.com/geneontology/go-ontology/issues/20935 jl 2013-03-21T14:01:28Z GO:1902398 biological_process owl:Class GO:1900325 biolink:NamedThing negative regulation of maltotriulose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltotriulose transport. tmpzr1t_l9r_go_relaxed.owl down regulation of maltotriulose transport|downregulation of maltotriulose transport|down-regulation of maltotriulose transport|inhibition of maltotriulose transport tt 2012-04-06T01:48:16Z biological_process owl:Class GO:0048207 biolink:NamedThing vesicle targeting, rough ER to cis-Golgi The process in which vesicles are directed to specific destination membranes during transport from the rough endoplasmic reticulum to the cis-Golgi. tmpzr1t_l9r_go_relaxed.owl rough ER to cis-Golgi targeting|vesicle targeting, rough endoplasmic reticulum to cis-Golgi|rough endoplasmic reticulum to cis-Golgi targeting biological_process owl:Class GO:0044845 biolink:NamedThing chain elongation of O-linked mannose residue Extension of the O-linked mannose residue of a mannoprotein by the stepwise addition of further mannose molecules. tmpzr1t_l9r_go_relaxed.owl Example annotations to this term include the S. cerevisiae alpha1,2-mannosyltransferases ScKre2p, ScKtr1p and ScKtr3pof the KTR family. jl 2014-05-08T15:56:39Z biological_process owl:Class GO:0072627 biolink:NamedThing interleukin-28A production The appearance of interleukin-28A due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-28A production|IL28A production|interleukin-28A secretion|interferon lambda 2 production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072628 biological_process owl:Class GO:0035799 biolink:NamedThing ureter maturation A developmental process, independent of morphogenetic (shape) change, that is required for the ureter to attain its fully functional state. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder or from the Malpighian tubule to the hindgut. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-14T01:13:39Z biological_process owl:Class GO:0150002 biolink:NamedThing distal dendrite The dendrite of the dendritic tree that is farthest away from the neuronal cell body (the soma). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018002 biolink:NamedThing N-terminal peptidyl-glutamic acid acetylation The acetylation of the N-terminal glutamic acid of proteins to form the derivate acetyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0044 See also the molecular function term 'aspartate N-acetyltransferase activity ; GO:0017188'. biological_process owl:Class GO:0032527 biolink:NamedThing protein exit from endoplasmic reticulum The directed movement of proteins from the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl protein exit from ER|protein export from ER|protein export from endoplasmic reticulum biological_process owl:Class GO:1990718 biolink:NamedThing axonemal central pair projection Part of the 9+2 axoneme, that occurs in most motile cilia, consisting of the projections off of the central pair of single microtubules. tmpzr1t_l9r_go_relaxed.owl krc 2015-03-27T22:43:01Z cellular_component owl:Class GO:2000252 biolink:NamedThing negative regulation of feeding behavior Any process that stops, prevents or reduces the frequency, rate or extent of feeding behavior. tmpzr1t_l9r_go_relaxed.owl negative regulation of feeding behaviour|negative regulation of behavioural response to food|negative regulation of behavioral response to food|negative regulation of drinking|negative regulation of eating yaf 2010-11-18T11:24:14Z biological_process owl:Class GO:0018881 biolink:NamedThing bromoxynil metabolic process The chemical reactions and pathways involving bromoxynil, C7H3Br2NO, a dibrominated phenol derivative with a cyano (-CN) group attached. Bromoxynil is used as a herbicide for post-emergent control of annual broadleaf weeds and works by inhibiting photosynthesis in the target plants. tmpzr1t_l9r_go_relaxed.owl bromoxynil metabolism UM-BBD_pathwayID:box biological_process owl:Class GO:1905831 biolink:NamedThing negative regulation of spindle assembly Any process that stops, prevents or reduces the frequency, rate or extent of spindle assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of bipolar spindle formation|negative regulation of bipolar spindle formation|down-regulation of spindle assembly|inhibition of bipolar spindle biosynthesis|downregulation of bipolar spindle formation|down-regulation of bipolar spindle biosynthesis|negative regulation of bipolar spindle biosynthesis|down regulation of spindle biosynthesis|inhibition of spindle assembly|negative regulation of spindle formation|downregulation of spindle assembly|down regulation of bipolar spindle biosynthesis|downregulation of bipolar spindle biosynthesis|down regulation of spindle assembly|inhibition of bipolar spindle formation|downregulation of spindle formation|negative regulation of spindle biosynthesis|inhibition of spindle formation|down regulation of spindle formation|inhibition of spindle biosynthesis|down-regulation of bipolar spindle formation|down-regulation of spindle formation|down-regulation of spindle biosynthesis|downregulation of spindle biosynthesis hbye 2017-01-17T10:26:37Z biological_process owl:Class GO:1902116 biolink:NamedThing negative regulation of organelle assembly Any process that stops, prevents or reduces the frequency, rate or extent of organelle assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of organelle assembly|down regulation of organelle assembly|down-regulation of organelle assembly|inhibition of organelle assembly pr 2013-05-14T09:43:31Z biological_process owl:Class GO:0015591 biolink:NamedThing D-ribose transmembrane transporter activity Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034656 biolink:NamedThing nucleobase-containing small molecule catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. tmpzr1t_l9r_go_relaxed.owl nucleobase, nucleoside and nucleotide degradation|nucleobase, nucleoside and nucleotide breakdown|nucleobase, nucleoside and nucleotide catabolism biological_process owl:Class GO:0140093 biolink:NamedThing esBAF complex An embryonic stem cell-specific SWI/SNF-type complex that contains eight or nine proteins, including both conserved (core) and nonconserved components; contains the ATPase product of either the SMARCA4/BAF190A/BRG1 gene, the mammalian ortholog of the yeast SNF2 gene, or an ortholog thereof. Compared to many other BAF complexes never contains ACTL6B/BAF53B, ARID1B/BAF250B, SMARCA2/BRM, SMARCC2/BAF170 or SMARCD3/BAF60C but contains PHF10/BAF45A, DPF2/BAF45D and possibly one of BCL7A/B/C. tmpzr1t_l9r_go_relaxed.owl embryonic stem cell-specific SWI/SNF complex|embryonic stem cell-specific BAF complex pg 2017-09-05T09:23:51Z cellular_component owl:Class GO:0045640 biolink:NamedThing regulation of basophil differentiation Any process that modulates the frequency, rate or extent of basophil differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047411 biolink:NamedThing 2-(acetamidomethylene)succinate hydrolase activity Catalysis of the reaction: 2 H2O + 2-(acetamidomethylene)succinate = CO2 + NH3 + succinate semialdehyde + acetate. tmpzr1t_l9r_go_relaxed.owl alpha-(N-acetylaminomethylene)succinic acid hydrolase activity|2-(acetamidomethylene)succinate amidohydrolase (deaminating, decarboxylating) MetaCyc:3.5.1.29-RXN|EC:3.5.1.29|RHEA:10432 molecular_function owl:Class GO:0070929 biolink:NamedThing trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-16T04:06:12Z biological_process owl:Class GO:0044357 biolink:NamedThing regulation of rRNA stability Any process that modulates the propensity of rRNA molecules to degradation. Includes processes that both stabilize and destabilize rRNAs. tmpzr1t_l9r_go_relaxed.owl regulation of ribosomal RNA stability jl 2011-08-31T09:57:54Z biological_process owl:Class GO:0046058 biolink:NamedThing cAMP metabolic process The chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl cAMP metabolism|cyclic AMP metabolic process|3',5'-cAMP metabolism|3',5' cAMP metabolic process|cyclic AMP metabolism|3',5'-cAMP metabolic process|cAMP generating peptide activity|adenosine 3',5'-cyclophosphate metabolic process|3',5' cAMP metabolism|adenosine 3',5'-cyclophosphate metabolism biological_process owl:Class GO:0002366 biolink:NamedThing leukocyte activation involved in immune response A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl immune cell activation during immune response|leucocyte activation during immune response|leukocyte activation during immune response biological_process owl:Class GO:0047650 biolink:NamedThing alkylglycerone kinase activity Catalysis of the reaction: O-alkylglycerone + ATP = O-alkylglycerone phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:O-alkylglycerone phosphotransferase activity|alkyldihydroxyacetone kinase activity|alkyldihydroxyacetone kinase (phosphorylating) RHEA:23088|KEGG_REACTION:R03944|EC:2.7.1.84|MetaCyc:ALKYLGLYCERONE-KINASE-RXN molecular_function owl:Class GO:0008678 biolink:NamedThing 2-deoxy-D-gluconate 3-dehydrogenase activity Catalysis of the reaction: 2-deoxy-D-gluconate + NAD+ = 3-dehydro-2-deoxy-D-gluconate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 2-deoxygluconate dehydrogenase activity|2-keto-3-deoxygluconate oxidoreductase activity|2-deoxy-D-gluconate:NAD+ 3-oxidoreductase activity EC:1.1.1.125|MetaCyc:KDUD-RXN|RHEA:12160 molecular_function owl:Class GO:1905754 biolink:NamedThing ascospore-type prospore nucleus Any nucleus that is part of a ascospore-type prospore. tmpzr1t_l9r_go_relaxed.owl cell nucleus of ascospore-type prospore|nucleus of ascospore-type prospore al 2016-12-12T13:25:00Z cellular_component owl:Class GO:2000360 biolink:NamedThing negative regulation of binding of sperm to zona pellucida Any process that stops, prevents or reduces the frequency, rate or extent of binding of sperm to the zona pellucida. tmpzr1t_l9r_go_relaxed.owl negative regulation of ZPG binding yaf 2011-02-03T02:42:54Z biological_process owl:Class GO:0022893 biolink:NamedThing low-affinity tryptophan transmembrane transporter activity Catalysis of the low-affinity transfer of L-tryptophan from one side of a membrane to the other. Tryptophan is 2-amino-3-(1H-indol-3-yl)propanoic acid. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low-affinity tryptophan permease activity GO:0015510 molecular_function owl:Class GO:0015196 biolink:NamedThing L-tryptophan transmembrane transporter activity Enables the transfer of L-tryptophan from one side of a membrane to the other. Tryptophan is 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl L-tryptophan transporter activity|L-tryptophan permease activity|valine/tyrosine/tryptophan permease activity Reactome:R-HSA-8870352 GO:0005299 molecular_function owl:Class GO:0044300 biolink:NamedThing cerebellar mossy fiber An axon arising from cerebellar projecting cells in the cochlea, vestibular nuclei, spinal cord, reticular formation, cerebellar nuclei and basilar pontine nuclei. Mossy fibers enter through all three cerebellar peduncles and send collaterals to the deep cerebellar nuclei, then branch in the white matter and terminate in the granule cell layer. Through this branching, a given mossy fiber can innervate several folia. Mossy fibers synapse on granule cells. The synaptic contacts are made at enlargements along the length of the mossy fiber called mossy fiber rosettes. The enlargements of the rosettes give the axons a mossy-looking appearance in Golgi stained preparations. tmpzr1t_l9r_go_relaxed.owl cerebellar mossy fibre NIF_Subcellular:nlx_subcell_20090209 jl 2010-02-05T11:16:40Z cellular_component owl:Class GO:0033524 biolink:NamedThing sinapate ester metabolic process The chemical reactions and pathways involving ester derivatives of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate. tmpzr1t_l9r_go_relaxed.owl sinapate ester metabolism biological_process owl:Class GO:0044608 biolink:NamedThing peptidyl-L-threonine methyl ester biosynthetic process from peptidyl-threonine The modification of a C-terminal peptidyl-threonine to form peptidyl-L-threonine methyl ester. tmpzr1t_l9r_go_relaxed.owl peptidyl-threonine esterification RESID:AA0507 jl 2012-05-30T02:47:57Z biological_process owl:Class GO:0034675 biolink:NamedThing integrin alpha6-beta1 complex An integrin complex that comprises one alpha6 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB1 complex|VLA-6 complex|alpha6-beta1 integrin complex cellular_component owl:Class GO:0048941 biolink:NamedThing posterior lateral line nerve glial cell development The process aimed at the progression of a glial cell in the posterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090673 biolink:NamedThing endothelial cell-matrix adhesion The binding of an endothelial cell to the extracellular matrix via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl tb 2016-01-15T15:38:11Z biological_process owl:Class GO:0034282 biolink:NamedThing ent-pimara-8(14),15-diene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-pimara-8(14),15-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-copalyl-diphosphate diphosphate-lyase [ent-pimara-8(14),15-diene-forming] activity|ent-pimaradiene synthase activity EC:4.2.3.30|RHEA:25540|KEGG_REACTION:R09121|MetaCyc:RXN-7788 molecular_function owl:Class GO:0033905 biolink:NamedThing xylan endo-1,3-beta-xylosidase activity Catalysis of the random hydrolysis of (1->3)-beta-D-glycosidic linkages in (1->3)-beta-D-xylans. tmpzr1t_l9r_go_relaxed.owl endo-1,3-beta-xylanase activity|1,3-beta-xylanase activity|endo-1,3-xylanase activity|1,3-xylanase activity|xylanase activity|1,3-beta-D-xylan xylanohydrolase activity|endo-beta-1,3-xylanase activity|beta-1,3-xylanase activity EC:3.2.1.32|MetaCyc:3.2.1.32-RXN molecular_function owl:Class GO:1905944 biolink:NamedThing positive regulation of formation of growth cone in injured axon Any process that activates or increases the frequency, rate or extent of formation of growth cone in injured axon. tmpzr1t_l9r_go_relaxed.owl upregulation of formation of growth cone in injured axon|activation of formation of growth cone in injured axon|up regulation of formation of growth cone in injured axon|up-regulation of formation of growth cone in injured axon rz 2017-02-13T09:09:21Z biological_process owl:Class GO:1901202 biolink:NamedThing negative regulation of extracellular matrix assembly Any process that stops, prevents or reduces the frequency, rate or extent of extracellular matrix assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of extracellular matrix assembly|inhibition of extracellular matrix assembly|down-regulation of extracellular matrix assembly|down regulation of extracellular matrix assembly rl 2012-07-27T04:04:24Z biological_process owl:Class GO:2000209 biolink:NamedThing regulation of anoikis Any process that modulates the frequency, rate or extent of anoikis. tmpzr1t_l9r_go_relaxed.owl regulation of detachment induced cell death|regulation of suspension induced apoptosis mah 2010-11-03T02:00:33Z biological_process owl:Class GO:0098825 biolink:NamedThing peptidyl-histidine guanylation The guanylylation of peptidyl-histidine to form (phospho-5'-guanosine)-L-histidine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0325 biological_process owl:Class GO:0061373 biolink:NamedThing mammillary axonal complex development The progression of the mammillary axonal complex over time, from its formation to the mature structure. The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T08:49:59Z biological_process owl:Class GO:0003149 biolink:NamedThing membranous septum morphogenesis The process in which the membranous septum is generated and organized. The membranous septum is the upper part of ventricular septum. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T07:51:41Z biological_process owl:Class GO:0070529 biolink:NamedThing L-tryptophan aminotransferase activity Catalysis of the transfer of an amino group from L-tryptophan to an acceptor, usually a 2-oxo acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:2000137 biolink:NamedThing negative regulation of cell proliferation involved in heart morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of cell proliferation involved in heart morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T12:43:55Z biological_process owl:Class GO:2000763 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process Any positive regulation of transcription from RNA polymerase II promoter that is involved in norepinephrine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from Pol II promoter involved in norepinephrine anabolism|positive regulation of transcription from Pol II promoter involved in levarterenol biosynthesis|positive regulation of transcription from Pol II promoter involved in norepinephrine formation|positive regulation of transcription from Pol II promoter involved in levarterenol biosynthetic process|positive regulation of transcription from Pol II promoter involved in noradrenaline biosynthetic process|positive regulation of transcription from Pol II promoter involved in norepinephrine biosynthesis|positive regulation of transcription from Pol II promoter involved in norepinephrine synthesis|positive regulation of transcription from Pol II promoter involved in norepinephrine biosynthetic process|positive regulation of transcription from Pol II promoter involved in noradrenaline biosynthesis vk 2011-06-18T04:14:58Z biological_process owl:Class GO:0007113 biolink:NamedThing endomitotic cell cycle A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell. tmpzr1t_l9r_go_relaxed.owl endomitosis Wikipedia:Mitosis#Endomitosis Note that this term should not be confused with 'abortive mitotic cell cycle ; GO:0033277'. Although abortive mitosis is sometimes called endomitosis, GO:0033277 refers to a process in which a mitotic spindle forms and chromosome separation begins. biological_process owl:Class GO:0007234 biolink:NamedThing osmosensory signaling via phosphorelay pathway A series of molecular signals generated in response to osmotic change, as mediated through a phosphorelay system. tmpzr1t_l9r_go_relaxed.owl osmosensory signaling pathway via two-component system|osmolarity signalling pathway via two-component system|signal transduction during osmotic stress via two-component system|osmolarity sensing via two-component system|osmosensory signalling pathway via two-component system|osmolarity signaling pathway via two-component system biological_process owl:Class GO:0055083 biolink:NamedThing monovalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of monovalent inorganic anions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061749 biolink:NamedThing forked DNA-dependent helicase activity Unwinding a DNA helix containing forked DNA, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl dph 2015-11-11T13:10:51Z molecular_function owl:Class GO:0045260 biolink:NamedThing plasma membrane proton-transporting ATP synthase complex A proton-transporting ATP synthase complex found in the plasma membrane. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl plasma membrane hydrogen-translocating F-type ATPase complex|hydrogen-transporting ATP synthase|proton-transporting ATP synthase complex|hydrogen-translocating F-type ATPase complex GO:0045256 cellular_component owl:Class GO:0047442 biolink:NamedThing 17-alpha-hydroxyprogesterone aldolase activity Catalysis of the reaction: 17-alpha-hydroxyprogesterone = acetaldehyde + 4-androstene-3,17-dione. tmpzr1t_l9r_go_relaxed.owl 17alpha-hydroxyprogesterone aldolase activity|17-alpha-hydroxyprogesterone acetaldehyde-lyase activity|17alpha-hydroxyprogesterone acetaldehyde-lyase activity|17alpha-hydroxyprogesterone acetaldehyde-lyase (4-androstene-3,17-dione-forming)|C-17/C-20 lyase activity EC:4.1.2.30|RHEA:14753|MetaCyc:4.1.2.30-RXN molecular_function owl:Class GO:0018060 biolink:NamedThing N-terminal peptidyl-cysteine deamination The oxidative deamination of N-terminal peptidyl-cysteine to form pyruvic acid with an amide bond between its 1-carboxyl group and the N-terminal residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034684 biolink:NamedThing integrin alphav-beta5 complex An integrin complex that comprises one alphav subunit and one beta5 subunit. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB5 complex|alphav-beta5 integrin complex cellular_component owl:Class GO:2001315 biolink:NamedThing UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process The chemical reactions and pathways resulting in the formation of a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose. tmpzr1t_l9r_go_relaxed.owl UDP-4-deoxy-4-formamido-beta-L-arabinopyranose formation|UDP-4-deoxy-4-formamido-beta-L-arabinopyranose anabolism|UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthesis|UDP-4-deoxy-4-formamido-beta-L-arabinopyranose synthesis pr 2012-03-22T01:20:05Z biological_process owl:Class GO:0030910 biolink:NamedThing olfactory placode formation The formation of a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075529 biolink:NamedThing establishment of latency as a circular episome A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a circular structure. tmpzr1t_l9r_go_relaxed.owl establishment of latency as a circular plasmid|establishment of circular plasmid latency jl 2011-08-04T03:08:17Z biological_process owl:Class GO:0006154 biolink:NamedThing adenosine catabolic process The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. tmpzr1t_l9r_go_relaxed.owl adenosine catabolism|adenosine breakdown|adenosine phosphorolysis|adenosine degradation GO:0006156 biological_process owl:Class GO:0008695 biolink:NamedThing 3-phenylpropionate dioxygenase activity Catalysis of the reaction: 3-phenylpropionate + NADH + H+ + O2 = NAD+ + cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol. tmpzr1t_l9r_go_relaxed.owl 3-phenylpropanoate dioxygenase activity|HcaA1A2CD|Hca dioxygenase activity|3-phenylpropanoate,NADH:oxygen oxidoreductase (2,3-hydroxylating) activity MetaCyc:HCAMULTI-RXN|UM-BBD_enzymeID:e0307|EC:1.14.12.19|RHEA:20357 molecular_function owl:Class GO:0061624 biolink:NamedThing fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate The chemical reactions and pathways resulting in the breakdown of fructose that results in the formation of dihydroxyacetone phosphate and glyceraldehyde-3-phosphate. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-29T12:58:28Z biological_process owl:Class GO:0070249 biolink:NamedThing positive regulation of natural killer cell apoptotic process Any process that activates or increases the frequency, rate or extent of natural killer cell death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of natural killer cell apoptosis|activation of natural killer cell apoptosis|positive regulation of NK cell apoptosis|upregulation of natural killer cell apoptosis|stimulation of natural killer cell apoptosis|up regulation of natural killer cell apoptosis|up-regulation of natural killer cell apoptosis biological_process owl:Class GO:0140064 biolink:NamedThing peptide crotonyltransferase activity Catalysis of the reaction: crotonyl-CoA + lysine in peptide = CoA + N-crotonyl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl protein crotonyltransferase activity pg 2017-07-20T16:40:57Z molecular_function owl:Class GO:0034079 biolink:NamedThing butanediol biosynthetic process The chemical reactions and pathways resulting in the formation of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3. tmpzr1t_l9r_go_relaxed.owl butanediol biosynthesis|butylene glycol biosynthetic process|butanediol formation|butylene glycol biosynthesis|butanediol synthesis|butanediol anabolism MetaCyc:P125-PWY biological_process owl:Class GO:0061769 biolink:NamedThing ribosylnicotinate kinase activity Catalysis of the reaction: N-ribosylnicotinate + ATP = ADP + 2 H(+) + nicotinate mononucleotide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8869607|Reactome:R-HSA-8869606 dph 2016-05-05T14:41:44Z molecular_function owl:Class GO:0102745 biolink:NamedThing dihydrogeranylgeranyl-PP reductase activity Catalysis of the reaction: H+ + dihydrogeranylgeranyl-PP + NADPH = tetrahydrogeranylgeranyl-PP + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7659 molecular_function owl:Class GO:0042686 biolink:NamedThing regulation of cardioblast cell fate specification Any process that mediates the specification of a cell into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000366 biolink:NamedThing intergenic mRNA trans splicing The joining together of two independently transcribed RNAs from two different genes, each of which also produces mRNA(s) via cis-splicing. tmpzr1t_l9r_go_relaxed.owl intergenic nuclear mRNA trans splicing biological_process owl:Class GO:0000365 biolink:NamedThing mRNA trans splicing, via spliceosome The joining together of exons from two different primary transcripts of messenger RNA (mRNA) via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA trans splicing, via U2-type spliceosome|nuclear mRNA trans splicing, via spliceosome biological_process owl:Class GO:0060858 biolink:NamedThing vesicle-mediated transport involved in floral organ abscission The directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ. tmpzr1t_l9r_go_relaxed.owl membrane trafficking involved in floral organ shedding dph 2009-08-12T03:48:54Z biological_process owl:Class GO:1903000 biolink:NamedThing regulation of lipid transport across blood-brain barrier Any process that modulates the frequency, rate or extent of lipid transport across blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl regulation of lipid transport across blood brain barrier sjp 2014-05-09T09:30:04Z biological_process owl:Class GO:1990020 biolink:NamedThing recurrent axon collateral Axon collateral that ramifies in the area of the soma of the cell of origin. tmpzr1t_l9r_go_relaxed.owl recurrent collateral NIF_Subcellular:sao1642494436 pr 2013-01-10T16:04:31Z cellular_component owl:Class GO:0016715 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced ascorbate and one other donor, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.17.- molecular_function owl:Class GO:0046056 biolink:NamedThing dADP metabolic process The chemical reactions and pathways involving dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dADP metabolism biological_process owl:Class GO:0006163 biolink:NamedThing purine nucleotide metabolic process The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl purine metabolism|purine metabolic process|purine nucleotide metabolism biological_process owl:Class GO:0000705 biolink:NamedThing achiasmate meiosis I The first division of meiosis in which homologous chromosomes are paired and segregated from each other, occurring in the constitutive absence of chiasmata. tmpzr1t_l9r_go_relaxed.owl achiasmate meiosis I nuclear division biological_process owl:Class GO:0048374 biolink:NamedThing regulation of lateral mesodermal cell fate determination Any process that modulates the frequency, rate or extent of lateral mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl regulation of lateral mesoderm cell fate determination|regulation of lateral plate mesoderm cell fate determination|regulation of lateral plate mesodermal cell fate determination biological_process owl:Class GO:0062160 biolink:NamedThing spongiome A cellular anatomical entity which is a network of tubules and vessicles and is part of the contractile vacuole complex. It is involved in the discharge of water externally. One of its functions is osmoregulatory. tmpzr1t_l9r_go_relaxed.owl dph 2019-09-26T14:30:41Z cellular_component owl:Class GO:0047841 biolink:NamedThing dehydrogluconokinase activity Catalysis of the reaction: 2-dehydro-D-gluconate + ATP = 6-phospho-2-dehydro-D-gluconate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl dehydogluconokinase activity|ketogluconokinase activity|ketogluconokinase (phosphorylating)|2-ketogluconokinase activity|2-ketogluconate kinase activity|ATP:2-dehydro-D-gluconate 6-phosphotransferase activity KEGG_REACTION:R02658|EC:2.7.1.13|RHEA:10788|MetaCyc:DEHYDOGLUCONOKINASE-RXN molecular_function owl:Class GO:0021544 biolink:NamedThing subpallium development The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061173 biolink:NamedThing positive regulation of establishment of bipolar cell polarity Any process that increases the rate, frequency or extent of the establishment of bipolar cell polarity. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-30T08:59:20Z biological_process owl:Class GO:0050332 biolink:NamedThing thiamine pyridinylase activity Catalysis of the reaction: pyridine + thiamine = 5-(2-hydroxyethyl)-4-methylthiazole + heteropyrithiamine. tmpzr1t_l9r_go_relaxed.owl thiamin pyridinylase activity|thiamine:base 2-methyl-4-aminopyrimidine-5-methenyltransferase activity|thiamine pyridinolase activity|thiamin hydrolase activity|thiamin pyridinolase activity|thiamin:base 2-methyl-4-aminopyrimidine-5-methenyltransferase activity|thiamine hydrolase activity|pyrimidine transferase activity|thiaminase I activity KEGG_REACTION:R02863|EC:2.5.1.2|MetaCyc:THIAMIN-PYRIDINYLASE-RXN|RHEA:17697 molecular_function owl:Class GO:0050802 biolink:NamedThing circadian sleep/wake cycle, sleep The part of the circadian sleep/wake cycle where the organism is asleep. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050612 biolink:NamedThing arsenate reductase (donor) activity Catalysis of the reaction: A + arsenite + H(2)O = AH(2) + arsenate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl arsenate:(acceptor) oxidoreductase activity|arsenate:acceptor oxidoreductase activity EC:1.20.99.1|MetaCyc:1.20.99.1-RXN|RHEA:18449|KEGG_REACTION:R05752 molecular_function owl:Class GO:0110020 biolink:NamedThing regulation of actomyosin structure organization Any process that modulates the frequency, rate or extent of the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-20T19:28:58Z biological_process owl:Class GO:0009020 biolink:NamedThing tRNA (guanosine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methylguanosine. tmpzr1t_l9r_go_relaxed.owl tRNA guanosine-2'-O-methyltransferase activity|tRNA (Gm18) 2'-O-methyltransferase activity|S-adenosyl-L-methionine:tRNA (guanosine-2'-O-)-methyltransferase activity|tRNA (guanosine 2')-methyltransferase activity|S-adenosyl-L-methionine:tRNA guanosine-2'-O-methyltransferase activity|transfer ribonucleate guanosine 2'-methyltransferase activity|tRNA guanosine 2'-methyltransferase activity|tRNA (Gm18) methyltransferase activity RHEA:20077|EC:2.1.1.34|Reactome:R-HSA-9024161|MetaCyc:2.1.1.34-RXN molecular_function owl:Class GO:0034461 biolink:NamedThing uropod retraction The process in which a uropod detaches from the cell substrate and retracts the rear of a migrating cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032796 biolink:NamedThing uropod organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a uropod, a rigid membrane projection with related cytoskeletal components at the trailing edge of a lymphocyte or other cell in the process of migrating or being activated. tmpzr1t_l9r_go_relaxed.owl uropod organisation|uropod organization and biogenesis biological_process owl:Class GO:0008507 biolink:NamedThing sodium:iodide symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: iodide(out) + Na+(out) = iodide(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/iodide symporter activity Reactome:R-HSA-429591|Reactome:R-HSA-5658195 molecular_function owl:Class GO:0015373 biolink:NamedThing anion:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monovalent anion(out) + Na+(out) = monovalent anion(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl monovalent anion:sodium symporter activity molecular_function owl:Class GO:0060847 biolink:NamedThing endothelial cell fate specification The process involved in the specification of identity of an endothelial cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T11:00:04Z biological_process owl:Class GO:0018654 biolink:NamedThing 2-hydroxy-phenylacetate hydroxylase activity Catalysis of the reaction: 2-hydroxyphenylacetate + NADH + O2 = NAD+ + OH- + homogentisate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0252|EC:1.14.13.- molecular_function owl:Class GO:0034463 biolink:NamedThing 90S preribosome assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a 90S preribosome. The 90S preribosome represents the complex that forms on the primary rRNA transcript before it splits into the small subunit and large subunit portions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047336 biolink:NamedThing 5-methyldeoxycytidine-5'-phosphate kinase activity Catalysis of the reaction: 2'-deoxy-5-methyl-5'-cytidylate + ATP = 5-methyldeoxycytidine diphosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:5-methyldeoxycytidine-5'-phosphate phosphotransferase activity MetaCyc:2.7.4.19-RXN|KEGG_REACTION:R04235|EC:2.7.4.19|RHEA:11396 molecular_function owl:Class GO:0030739 biolink:NamedThing O-demethylpuromycin O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + O-demethylpuromycin = S-adenosyl-L-homocysteine + puromycin. tmpzr1t_l9r_go_relaxed.owl O-demethylpuromycin methyltransferase activity|S-adenosyl-L-methionine:O-demethylpuromycin O-methyltransferase activity RHEA:22280|MetaCyc:2.1.1.38-RXN|EC:2.1.1.38 molecular_function owl:Class GO:0047249 biolink:NamedThing sarsapogenin 3-beta-glucosyltransferase activity Catalysis of the reaction: (25S)-5beta-spirostan-3beta-ol + UDP-D-glucose = (25S)-5beta-spirostan-3beta-yl beta-D-glucoside + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:(25S)-5beta-spirostan-3beta-ol 3-O-beta-D-glucosyltransferase activity|UDPglucose:(25S)-5beta-spirostan-3beta-ol 3-O-beta-D-glucosyltransferase activity|sarsapogenin 3beta-glucosyltransferase activity|uridine diphosphoglucose-sarsapogenin glucosyltransferase activity KEGG_REACTION:R04359|MetaCyc:2.4.1.193-RXN|EC:2.4.1.193|RHEA:14461 molecular_function owl:Class GO:0042474 biolink:NamedThing middle ear morphogenesis The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003957 biolink:NamedThing NAD(P)+ transhydrogenase (B-specific) activity Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+, driving the transfer of a solute or solutes from one side of a membrane to the other. In the course of the reaction (left to right) one H atom is transferred from inside the cell to outside. The reaction is B-specific (i.e. the pro-S hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to both NAD+ and NADP+. tmpzr1t_l9r_go_relaxed.owl H+-thase|NADPH:NAD+ oxidoreductase (B-specific)|NADH transhydrogenase|NAD transhydrogenase|pyridine nucleotide transferase|NADPH-NAD transhydrogenase|NAD(P) transhydrogenase (B-specific) activity|NADH-NADP-transhydrogenase|NADPH-NAD oxidoreductase|non-energy-linked transhydrogenase activity|NADPH:NAD+ transhydrogenase|nicotinamide adenine dinucleotide (phosphate) transhydrogenase|nicotinamide nucleotide transhydrogenase activity|pyridine nucleotide transhydrogenase activity MetaCyc:PYRNUTRANSHYDROGEN-RXN|EC:1.6.1.1 molecular_function owl:Class GO:0045478 biolink:NamedThing fusome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fusome, a large intracellular spectrin-rich structure found in insect germline cells and mammalian hematopoietic cells. tmpzr1t_l9r_go_relaxed.owl fusome organization and biogenesis|fusome organisation biological_process owl:Class GO:1900131 biolink:NamedThing negative regulation of lipid binding Any process that stops, prevents or reduces the frequency, rate or extent of lipid binding. tmpzr1t_l9r_go_relaxed.owl inhibition of lipid binding|down-regulation of lipid binding|down regulation of lipid binding|downregulation of lipid binding pm 2012-02-23T04:05:07Z biological_process owl:Class GO:0140113 biolink:NamedThing extracellular microvesicle biogenesis The assembly and secretion of a set of components to form an extracellular microvesicule, a membrane-bounded vesicle that ranges in size 100 nm to 1 micron in size) and exits the cell by budding. tmpzr1t_l9r_go_relaxed.owl extracellular microvesicle assembly https://github.com/geneontology/go-ontology/issues/14256 pg 2017-10-23T12:00:11Z biological_process owl:Class GO:0140112 biolink:NamedThing extracellular vesicle biogenesis The assembly and secretion a set of components to form an extracellular vesicule, a membrane-bounded vesicle that is released into the extracellular region. Extracellular vesicles include exosomes, microvesicles and apoptotic bodies, based on the mechanism by which they are released from cells and differentiated based on their size and content. tmpzr1t_l9r_go_relaxed.owl extracellular vesicle assembly https://github.com/geneontology/go-ontology/issues/14256 pg 2017-10-23T11:53:42Z biological_process owl:Class GO:0009512 biolink:NamedThing cytochrome b6f complex Complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome f, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species. tmpzr1t_l9r_go_relaxed.owl cytochrome b(6)f complex|cyt b(6)f complex|cyt b6-f complex|cyt b6/f complex|cytochrome b6/f complex|cytochrome b6-f complex|cyt b6f complex Wikipedia:Cytochrome_b6f_complex cellular_component owl:Class GO:0070069 biolink:NamedThing cytochrome complex A protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005147 biolink:NamedThing oncostatin-M receptor binding Binding to an oncostatin-M receptor. tmpzr1t_l9r_go_relaxed.owl oncostatin-M|oncostatin-M receptor ligand molecular_function owl:Class GO:0052695 biolink:NamedThing cellular glucuronidation The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor. tmpzr1t_l9r_go_relaxed.owl cellular glucuronoside biosynthesis|cellular glucuronoside biosynthetic process|cellular glucuronide biosynthesis|cellular glucuronide biosynthetic process 2011-07-27T05:28:18Z biological_process owl:Class GO:0099578 biolink:NamedThing regulation of translation at postsynapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating translation occurring at the postsynapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:2000474 biolink:NamedThing regulation of opioid receptor signaling pathway Any process that modulates the frequency, rate or extent of opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of opioid receptor signalling pathway bf 2011-03-09T09:40:19Z biological_process owl:Class GO:0000330 biolink:NamedThing plant-type vacuole lumen The volume enclosed within the vacuolar membrane of a vacuole that retains the same shape regardless of cell cycle phase. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl lumen of vacuole with cell cycle-independent morphology cellular_component owl:Class GO:0019170 biolink:NamedThing methylglyoxal reductase (NADH-dependent) activity Catalysis of the reaction: (R)-lactaldehyde + NAD+ = methylglyoxal + NADH + H+. tmpzr1t_l9r_go_relaxed.owl methylglyoxal reductase activity|D-lactaldehyde dehydrogenase activity|(R)-lactaldehyde:NAD+ oxidoreductase activity RHEA:24528|EC:1.1.1.78|MetaCyc:D-LACTALDEHYDE-DEHYDROGENASE-RXN molecular_function owl:Class GO:1905181 biolink:NamedThing regulation of urease activity Any process that modulates the frequency, rate or extent of urease activity. tmpzr1t_l9r_go_relaxed.owl regulation of urea amidohydrolase activity tb 2016-05-09T23:15:54Z biological_process owl:Class GO:0031052 biolink:NamedThing chromosome breakage Regulated cleavage of the developing macronuclear genome at a limited number of chromosome breakage sites (CBS). The macronuclear destined segment (MDS) sequence adjacent to the CBS (or separated from it by a BES) receives a macronuclear telomere following chromosome breakage. tmpzr1t_l9r_go_relaxed.owl establishment or maintenance of heterochromatin architecture Note that this term refers to breakage of chromosomes during normal DNA rearrangements characteristic of ciliates; it is not to be used for DNA damage or other abnormal occurrences. biological_process owl:Class GO:1901670 biolink:NamedThing negative regulation of superoxide dismutase activity Any process that stops, prevents or reduces the frequency, rate or extent of superoxide dismutase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of superoxide:superoxide oxidoreductase activity|inhibition of erythrocuprein|negative regulation of copper, zinc superoxide dismutase activity|down-regulation of Fe-SOD|negative regulation of Fe-SOD|down-regulation of Mn, Fe superoxide dismutase|down-regulation of superoxide dismutase I|down-regulation of Cu-Zn superoxide dismutase activity|inhibition of superoxide dismutase II|down regulation of SODF|negative regulation of nickel superoxide dismutase activity|down-regulation of SODS|down regulation of SODS|inhibition of ferrisuperoxide dismutase activity|downregulation of SOD-1|down-regulation of nickel superoxide oxidoreductase|inhibition of Fe-SOD|downregulation of superoxide dismutase activity|down regulation of erythrocuprein|inhibition of nickel superoxide oxidoreductase|downregulation of hepatocuprein|downregulation of superoxide dismutase I|negative regulation of iron superoxide oxidoreductase|inhibition of superoxide:superoxide oxidoreductase activity|down regulation of Cu,Zn-SOD|down-regulation of hemocuprein|negative regulation of SOD-2|down-regulation of superoxide dismutase activity|down-regulation of iron superoxide dismutase activity|downregulation of superoxide:superoxide oxidoreductase activity|down-regulation of manganese superoxide dismutase activity|negative regulation of iron superoxide dismutase activity|negative regulation of cytocuprein|downregulation of iron superoxide dismutase activity|down regulation of SOD-4|down-regulation of SOD-4|inhibition of SOD-3|down regulation of cytocuprein|down regulation of hepatocuprein|down-regulation of nickel superoxide dismutase activity|negative regulation of superoxide dismutase II|downregulation of iron superoxide oxidoreductase|negative regulation of SODF|down-regulation of Cu,Zn-SOD|inhibition of Mn-SOD|down regulation of manganese superoxide oxidoreductase|down-regulation of SOD|inhibition of hemocuprein|downregulation of Fe-SOD|negative regulation of SOD-1|negative regulation of erythrocuprein|down regulation of Cu-Zn superoxide dismutase activity|down regulation of manganese superoxide dismutase activity|down-regulation of hepatocuprein|down regulation of SOD|down-regulation of SOD-2|downregulation of cytocuprein|down regulation of SOD-1|inhibition of iron superoxide oxidoreductase|inhibition of manganese superoxide dismutase activity|down regulation of superoxide dismutase activity|negative regulation of Cu-Zn superoxide dismutase activity|negative regulation of Cu,Zn-SOD|downregulation of ferrisuperoxide dismutase activity|down regulation of zinc superoxide oxidoreductase|downregulation of SOD-4|down-regulation of superoxide dismutase II|down-regulation of SODF|inhibition of nickel superoxide dismutase activity|inhibition of SODF|downregulation of superoxide dismutase II|inhibition of superoxide dismutase activity|down regulation of superoxide:superoxide oxidoreductase activity|inhibition of manganese superoxide oxidoreductase|down regulation of iron superoxide dismutase activity|downregulation of nickel superoxide dismutase activity|down regulation of cuprein|negative regulation of manganese superoxide dismutase activity|down-regulation of zinc superoxide oxidoreductase|negative regulation of hepatocuprein|down regulation of nickel superoxide oxidoreductase|inhibition of SODS|negative regulation of Mn, Fe superoxide dismutase|downregulation of nickel superoxide oxidoreductase|downregulation of SODS|negative regulation of nickel superoxide oxidoreductase|inhibition of Cu-Zn superoxide dismutase activity|downregulation of Mn, Fe superoxide dismutase|down regulation of Fe-SOD|down regulation of superoxide dismutase I|inhibition of Mn, Fe superoxide dismutase|negative regulation of superoxide:superoxide oxidoreductase activity|negative regulation of manganese superoxide oxidoreductase|down regulation of SOD-3|down-regulation of cytocuprein|downregulation of manganese superoxide oxidoreductase|inhibition of iron superoxide dismutase activity|down regulation of SOD-2|downregulation of Cu,Zn-SOD|inhibition of SOD-1|down-regulation of erythrocuprein|downregulation of zinc superoxide oxidoreductase|down regulation of ferrisuperoxide dismutase activity|inhibition of SOD|inhibition of superoxide dismutase I|down-regulation of copper, zinc superoxide dismutase activity|inhibition of zinc superoxide oxidoreductase|down-regulation of cuprein|down regulation of superoxide dismutase II|inhibition of hepatocuprein|down regulation of nickel superoxide dismutase activity|downregulation of Mn-SOD|negative regulation of hemocuprein|downregulation of cuprein|negative regulation of zinc superoxide oxidoreductase|negative regulation of cuprein|negative regulation of SOD-3|down regulation of Mn, Fe superoxide dismutase|negative regulation of SOD|inhibition of SOD-4|inhibition of cytocuprein|downregulation of SOD-2|downregulation of Cu-Zn superoxide dismutase activity|downregulation of copper, zinc superoxide dismutase activity|negative regulation of SOD-4|negative regulation of ferrisuperoxide dismutase activity|inhibition of cuprein|negative regulation of Mn-SOD|down-regulation of SOD-1|down regulation of hemocuprein|down-regulation of Mn-SOD|negative regulation of SODS|down regulation of iron superoxide oxidoreductase|inhibition of copper, zinc superoxide dismutase activity|down regulation of Mn-SOD|inhibition of SOD-2|downregulation of hemocuprein|down regulation of copper, zinc superoxide dismutase activity|down-regulation of SOD-3|down-regulation of iron superoxide oxidoreductase|down-regulation of manganese superoxide oxidoreductase|downregulation of erythrocuprein|negative regulation of superoxide dismutase I|inhibition of Cu,Zn-SOD|downregulation of SODF|downregulation of SOD-3|downregulation of SOD|down-regulation of ferrisuperoxide dismutase activity|downregulation of manganese superoxide dismutase activity tb 2012-11-21T21:36:07Z biological_process owl:Class GO:0005117 biolink:NamedThing wishful thinking binding Binding to wishful thinking (Wit), a type II bone morphogenic protein receptor. tmpzr1t_l9r_go_relaxed.owl Wit ligand|Wit binding|wishful thinking ligand|SE20 receptor binding molecular_function owl:Class GO:1990032 biolink:NamedThing parallel fiber A parallel fiber results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_330 pr 2013-02-07T12:58:43Z cellular_component owl:Class GO:0097539 biolink:NamedThing ciliary transition fiber A nine-bladed, propeller-like protein complex that links the distal end of the basal body and the cilium to the plasma membrane. Functions in protein sorting and gating (i.e. active and passive transport of proteins in and out of the cilium). tmpzr1t_l9r_go_relaxed.owl transition fibre|distal appendage of centriole|cilial transition fibre|cilium transition fiber|centriolar distal appendage|ciliary transition fibre|transition fiber|distal appendage of mother centriole|cilium transition fibre|cilial transition fiber|distal appendage of basal body In mammals, ciliary transition fibers comprise at least five components (Ccdc41/Cep83, Cep89/Cep123, Sclt1, Fbf1, and Cep164) (PMID:24469809). pr 2013-12-03T16:46:37Z cellular_component owl:Class GO:0018294 biolink:NamedThing protein-FAD linkage via S-(8alpha-FAD)-L-cysteine The formation of a protein-FAD linkage via S-(8-alpha-FAD)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0143 biological_process owl:Class GO:0018293 biolink:NamedThing protein-FAD linkage The formation of a linkage between a protein amino acid and flavin-adenine dinucleotide (FAD). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045630 biolink:NamedThing positive regulation of T-helper 2 cell differentiation Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of T-helper 2 cell differentiation|up-regulation of T-helper 2 cell differentiation|upregulation of T-helper 2 cell differentiation|up regulation of T-helper 2 cell differentiation|activation of T-helper 2 cell differentiation|positive regulation of T-helper 2 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0071275 biolink:NamedThing cellular response to aluminum ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to aluminum|cellular response to aluminium ion mah 2009-12-10T03:52:20Z biological_process owl:Class GO:0038147 biolink:NamedThing C-X-C motif chemokine 12 receptor activity Combining with the C-X-C motif chemokine 12 (CXCL12) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CXCR4|CXCL12 receptor activity|CXCR7|SDF-1 receptor activity|stromal cell-derived factor-1 receptor activity bf 2012-05-11T11:32:53Z molecular_function owl:Class GO:0010169 biolink:NamedThing thioglucosidase complex A large (200-800 kDa) multiprotein complex formed by 70-kDa and 5-kDa myrosinases, myrosinase- binding proteins (MBPs), MBP-related proteins and myrosinase-associated proteins. The complex has been identified in Brassica napus seeds. tmpzr1t_l9r_go_relaxed.owl myrosinase complex cellular_component owl:Class GO:0060199 biolink:NamedThing clathrin-sculpted glutamate transport vesicle A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing glutamate. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted glutamate constitutive secretory pathway transport vesicle|clathrin sculpted glutamate transport vesicle cellular_component owl:Class GO:0061514 biolink:NamedThing interleukin-34-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-34 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:00:33Z biological_process owl:Class GO:1905617 biolink:NamedThing negative regulation of miRNA-mediated gene silencing by inhibition of translation Any process that stops, prevents or reduces the frequency, rate or extent of miRNA-mediated gene silencing by inhibition of translation. tmpzr1t_l9r_go_relaxed.owl negative regulation of downregulation of translation involved in gene silencing by miRNA|negative regulation of miRNA mediated inhibition of translation|down-regulation of gene silencing by miRNA, negative regulation of translation|down regulation of miRNA mediated inhibition of translation|downregulation of miRNA mediated inhibition of translation|down-regulation of inhibition of translation involved in gene silencing by miRNA|negative regulation of down-regulation of translation involved in gene silencing by miRNA|downregulation of negative regulation of translation involved in gene silencing by microRNA|down regulation of down-regulation of translation involved in gene silencing by miRNA|down-regulation of negative regulation of translation involved in gene silencing by microRNA|negative regulation of miRNA-mediated gene silencing, negative regulation of translation|down-regulation of miRNA-mediated gene silencing, negative regulation of translation|inhibition of negative regulation of translation involved in gene silencing by microRNA|downregulation of down-regulation of translation involved in gene silencing by miRNA|down regulation of inhibition of translation involved in gene silencing by miRNA|down-regulation of down-regulation of translation involved in gene silencing by miRNA|downregulation of inhibition of translation involved in gene silencing by miRNA|down-regulation of miRNA mediated inhibition of translation|negative regulation of negative regulation of translation involved in gene silencing by microRNA|inhibition of down regulation of translation involved in gene silencing by miRNA|downregulation of miRNA-mediated gene silencing, negative regulation of translation|inhibition of inhibition of translation involved in gene silencing by miRNA|downregulation of gene silencing by miRNA, negative regulation of translation|negative regulation of inhibition of translation involved in gene silencing by miRNA|inhibition of downregulation of translation involved in gene silencing by miRNA|down-regulation of down regulation of translation involved in gene silencing by miRNA|down regulation of gene silencing by miRNA, negative regulation of translation|down regulation of downregulation of translation involved in gene silencing by miRNA|negative regulation of down regulation of translation involved in gene silencing by miRNA|downregulation of downregulation of translation involved in gene silencing by miRNA|down regulation of down regulation of translation involved in gene silencing by miRNA|inhibition of gene silencing by miRNA, negative regulation of translation|down regulation of miRNA-mediated gene silencing, negative regulation of translation|down-regulation of downregulation of translation involved in gene silencing by miRNA|inhibition of miRNA mediated inhibition of translation|downregulation of down regulation of translation involved in gene silencing by miRNA|inhibition of miRNA-mediated gene silencing, negative regulation of translation|inhibition of down-regulation of translation involved in gene silencing by miRNA|down regulation of negative regulation of translation involved in gene silencing by microRNA|negative regulation of gene silencing by miRNA, negative regulation of translation https://github.com/geneontology/go-ontology/issues/22389 bc 2016-10-28T11:47:57Z biological_process owl:Class GO:0052724 biolink:NamedThing inositol hexakisphosphate 3-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 3-diphospho-1D-myo-inositol (1,2,4,5,6)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.7.4.21|MetaCyc:RXN-10971 ai 2011-08-16T11:50:48Z molecular_function owl:Class GO:1901464 biolink:NamedThing negative regulation of tetrapyrrole biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of tetrapyrrole anabolism|negative regulation of tetrapyrrole formation|downregulation of tetrapyrrole anabolism|down regulation of tetrapyrrole formation|inhibition of tetrapyrrole biosynthetic process|inhibition of tetrapyrrole synthesis|down-regulation of tetrapyrrole anabolism|downregulation of tetrapyrrole biosynthetic process|down regulation of tetrapyrrole synthesis|down-regulation of tetrapyrrole biosynthetic process|down-regulation of tetrapyrrole synthesis|negative regulation of tetrapyrrole synthesis|inhibition of tetrapyrrole biosynthesis|downregulation of tetrapyrrole synthesis|down regulation of tetrapyrrole biosynthesis|inhibition of tetrapyrrole formation|negative regulation of tetrapyrrole anabolism|downregulation of tetrapyrrole formation|down regulation of tetrapyrrole biosynthetic process|down-regulation of tetrapyrrole formation|down-regulation of tetrapyrrole biosynthesis|downregulation of tetrapyrrole biosynthesis|negative regulation of tetrapyrrole biosynthesis|inhibition of tetrapyrrole anabolism tt 2012-10-02T14:35:26Z biological_process owl:Class GO:1901402 biolink:NamedThing negative regulation of tetrapyrrole metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of tetrapyrrole metabolic process|down regulation of tetrapyrrole metabolism|down-regulation of tetrapyrrole metabolism|downregulation of tetrapyrrole metabolic process|downregulation of tetrapyrrole metabolism|negative regulation of tetrapyrrole metabolism|inhibition of tetrapyrrole metabolism|inhibition of tetrapyrrole metabolic process|down-regulation of tetrapyrrole metabolic process tt 2012-10-01T14:35:11Z biological_process owl:Class GO:0043013 biolink:NamedThing negative regulation of fusion of sperm to egg plasma membrane Any process that stops or prevents the binding and fusion of a sperm to the oocyte plasma membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of sperm-oocyte fusion|downregulation of fusion of sperm to egg plasma membrane|inhibition of fusion of sperm to egg plasma membrane|negative regulation of sperm-oocyte fusion|down regulation of fusion of sperm to egg plasma membrane|down-regulation of fusion of sperm to egg plasma membrane biological_process owl:Class GO:0009002 biolink:NamedThing serine-type D-Ala-D-Ala carboxypeptidase activity Catalysis of the reaction: (Ac)2-L-Lys-D-alanyl-D-alanine + H2O = (Ac)2-L-Lys-D-alanine + D-alanine. tmpzr1t_l9r_go_relaxed.owl DD-transpeptidase activity|DD-peptidase activity|D-alanyl carboxypeptidase activity|D-alanyl-D-alanine-cleaving peptidase activity|D-alanine carboxypeptidase|D-alanyl-D-alanine-cleaving-peptidase activity|DD-carboxypeptidase|D-alanyl-D-alanine carboxypeptidase activity|D-alanyl-D-alanine-carboxypeptidase activity MetaCyc:3.4.16.4-RXN|EC:3.4.16.4 molecular_function owl:Class GO:0102138 biolink:NamedThing 7-oxatyphasterol synthase activity Catalysis of the reaction: H+ + typhasterol + NADPH + O2 <=> 7-oxatyphasterol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11538 molecular_function owl:Class GO:0009420 biolink:NamedThing bacterial-type flagellum filament The long (approximately 20 nm), thin external structure of the bacterial-type flagellum, which acts as a propeller. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum filament|flagellar filament cellular_component owl:Class GO:0034872 biolink:NamedThing trans-geranyl-CoA isomerase activity Catalysis of the reaction: trans-geranyl-CoA = cis-geranyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1310|EC:5.2.1.- molecular_function owl:Class GO:0043879 biolink:NamedThing glycolate transmembrane transporter activity Enables the transfer of glycolate from one side of a membrane to the other. Glycolate is the smallest alpha-hydroxy acid (AHA). tmpzr1t_l9r_go_relaxed.owl hydroxyacetic acid transmembrane transporter activity|glycolate permease|glycolic acid transmembrane transporter activity|glcA RHEA:29447 molecular_function owl:Class GO:0008387 biolink:NamedThing steroid 7-alpha-hydroxylase activity Catalysis of the reaction: a steroid + donor-H2 + O2 = 7-alpha-hydroxysteroid + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2A12 molecular_function owl:Class GO:0062223 biolink:NamedThing regulation of somatic muscle development Any process that regulates the rate, frequency or extent of somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-13T18:58:37Z biological_process owl:Class GO:1901632 biolink:NamedThing regulation of synaptic vesicle membrane organization Any process that modulates the frequency, rate or extent of synaptic vesicle membrane organization. tmpzr1t_l9r_go_relaxed.owl regulation of SLMV biogenesis|regulation of synaptic vesicle membrane organisation|regulation of synaptic vesicle membrane organization and biogenesis ans 2012-11-15T11:40:48Z biological_process owl:Class GO:1905854 biolink:NamedThing negative regulation of heparan sulfate binding Any process that stops, prevents or reduces the frequency, rate or extent of heparan sulfate binding. tmpzr1t_l9r_go_relaxed.owl down regulation of heparan sulfate binding|down-regulation of heparan sulfate binding|downregulation of heparan sulfate binding|inhibition of heparan sulfate binding bc 2017-01-23T13:25:38Z biological_process owl:Class GO:0102376 biolink:NamedThing lupeol 28-oxidase activity Catalysis of the reaction: lupeol + 3 NADPH + 3 O2 + 3 H+ <=> betulinic acid + 3 NADP + 4 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13507 molecular_function owl:Class GO:0097403 biolink:NamedThing cellular response to raffinose Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a raffinose stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-29T10:30:46Z biological_process owl:Class GO:0018665 biolink:NamedThing 4-hydroxyphenylacetate 1-monooxygenase activity Catalysis of the reaction: 4-hydroxyphenylacetate + NADPH + H+ + O2 = homogentisate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetate 1-hydroxylase activity|4-HPA 1-hydroxylase activity|4-hydroxyphenyl-acetate 1-hydroxylase activity|4-hydroxyphenylacetate,NAD(P)H:oxygen oxidoreductase (1-hydroxylating)|4-hydroxyphenylacetic 1-hydroxylase activity MetaCyc:1.14.13.18-RXN|UM-BBD_reactionID:r0300|EC:1.14.13.18 molecular_function owl:Class GO:0039021 biolink:NamedThing pronephric glomerulus development The progression of the glomerulus of the pronephric kidney over time from its initial formation until its mature state. The pronephric glomerulus is part of the pronephric nephron and is restricted to one body segment. tmpzr1t_l9r_go_relaxed.owl This term is intended for annotation of fish and other organisms which contain a glomerulus as part of the pronephric nephron. It should not be used for annotation of Xenopus, which contains a pronephric glomus rather than a glomerulus. bf 2010-07-02T10:13:38Z biological_process owl:Class GO:1903999 biolink:NamedThing negative regulation of eating behavior Any process that stops, prevents or reduces the frequency, rate or extent of eating behavior. tmpzr1t_l9r_go_relaxed.owl negative regulation of eating behaviour|inhibition of eating behaviour|downregulation of eating behavior|down-regulation of eating behavior|down-regulation of eating behaviour|down regulation of eating behaviour|down regulation of eating behavior|downregulation of eating behaviour|inhibition of eating behavior sl 2015-03-05T20:40:28Z biological_process owl:Class GO:0102775 biolink:NamedThing 6-(4-methyl-2-oxopentyl)-4-hydroxy-2-pyrone synthase activity Catalysis of the reaction: 2 H+ + isovaleryl-CoA + 3 malonyl-CoA = 6-(4-methyl-2-oxopentyl)-4-hydroxy-2-pyrone + 4 coenzyme A + 3 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7826 molecular_function owl:Class GO:1901448 biolink:NamedThing regulation of response to butan-1-ol Any process that modulates the frequency, rate or extent of response to butan-1-ol. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-02T14:15:50Z biological_process owl:Class GO:0045787 biolink:NamedThing positive regulation of cell cycle Any process that activates or increases the rate or extent of progression through the cell cycle. tmpzr1t_l9r_go_relaxed.owl activation of progression through cell cycle|positive regulation of progression through cell cycle|up regulation of progression through cell cycle|positive regulation of cell cycle progression|upregulation of progression through cell cycle|stimulation of progression through cell cycle|up-regulation of progression through cell cycle biological_process owl:Class GO:1901715 biolink:NamedThing regulation of gamma-aminobutyric acid catabolic process Any process that modulates the frequency, rate or extent of gamma-aminobutyric acid catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of GABA catabolic process|regulation of gamma-aminobutyric acid breakdown|regulation of 4-aminobutyrate catabolism|regulation of gamma-aminobutyric acid catabolism|regulation of gamma-aminobutyric acid degradation|regulation of GABA catabolism|regulation of 4-aminobutanoate catabolism|regulation of 4-aminobutyrate catabolic process|regulation of 4-aminobutanoate catabolic process mcc 2012-12-19T16:13:24Z biological_process owl:Class GO:0030314 biolink:NamedThing junctional membrane complex Complex formed in muscle cells between the membrane of the sarcoplasmic reticulum and invaginations of the plasma membrane (T-tubules). tmpzr1t_l9r_go_relaxed.owl triad junction cellular_component owl:Class GO:0106008 biolink:NamedThing 2-oxoglutaramate amidase activity Catalysis of the reaction: 2-oxoglutaramate + H(2)O = 2-oxoglutarate + NH(3). tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.111|RHEA:32963 hjd 2017-04-25T14:10:02Z molecular_function owl:Class GO:0045852 biolink:NamedThing pH elevation Any process that increases the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051472 biolink:NamedThing glucosylglycerol metabolic process The chemical reactions and pathways involving glucosylglycerol, alpha-D-glucopyranosyl-alpha-(1,2)-glycerol. tmpzr1t_l9r_go_relaxed.owl glucosylglycerol metabolism biological_process owl:Class GO:1905257 biolink:NamedThing positive regulation of RNA binding transcription factor activity Any process that activates or increases the frequency, rate or extent of RNA binding transcription factor activity. tmpzr1t_l9r_go_relaxed.owl activation of RNA binding transcription factor activity|up regulation of RNA binding transcription factor activity|up-regulation of RNA binding transcription factor activity|upregulation of RNA binding transcription factor activity bf 2016-06-13T11:29:27Z biological_process owl:Class GO:2000442 biolink:NamedThing positive regulation of toll-like receptor 15 signaling pathway Any process that activates or increases the frequency, rate or extent of toll-like receptor 15 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of TLR15 signaling pathway|positive regulation of toll-like receptor 15 signalling pathway bf 2011-03-04T10:29:36Z biological_process owl:Class GO:0036111 biolink:NamedThing very long-chain fatty-acyl-CoA metabolic process The chemical reactions and pathways involving very long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a medium-chain fatty-acyl group. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very long-chain fatty acyl CoA metabolic process|very long-chain fatty acyl-CoA metabolism bf 2012-02-15T11:09:22Z biological_process owl:Class GO:1990834 biolink:NamedThing response to odorant Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an odorant stimulus. An odorant is any substance capable of stimulating the sense of smell. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-21T18:51:52Z biological_process owl:Class GO:0099063 biolink:NamedThing integral component of postsynaptic recycling endosome membrane The component of the postsynaptic recycling endosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046327 biolink:NamedThing glycerol biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl glycerol synthesis from pyruvate|glycerol anabolism from pyruvate|glyceroneogenesis|glycerol formation from pyruvate biological_process owl:Class GO:0060406 biolink:NamedThing positive regulation of penile erection Any process that increases the rate, frequency or extent of penile erection. Penile erection is the hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042423 biolink:NamedThing catecholamine biosynthetic process The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. tmpzr1t_l9r_go_relaxed.owl catecholamine anabolism|catecholamine biosynthesis|catecholamine synthesis|catecholamine formation Wikipedia:Catecholamines biological_process owl:Class GO:0018967 biolink:NamedThing tetrachloroethylene metabolic process The chemical reactions and pathways involving tetrachloroethylene (tetrachloroethene), a derivative of ethene with the hydrogen atoms replaced by chlorines. Tetrachloroethene has been used primarily as a solvent in dry-cleaning industries and to a lesser extent as a degreasing solvent. tmpzr1t_l9r_go_relaxed.owl tetrachloroethene metabolic process|tetrachloroethene metabolism|tetrachloroethylene metabolism UM-BBD_pathwayID:tce2 biological_process owl:Class GO:1905614 biolink:NamedThing negative regulation of developmental vegetative growth Any process that stops, prevents or reduces the frequency, rate or extent of developmental vegetative growth. tmpzr1t_l9r_go_relaxed.owl inhibition of developmental vegetative growth|downregulation of developmental vegetative growth|down-regulation of developmental vegetative growth|down regulation of developmental vegetative growth pga 2016-10-28T11:45:20Z biological_process owl:Class GO:0072310 biolink:NamedThing glomerular epithelial cell development The process whose specific outcome is the progression of a glomerular epithelial cell over time, from its formation to the mature structure. Glomerular epithelial cells are specialized epithelial cells that form part of the glomerulus; there are two types, glomerular parietal epithelial cells and glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T06:47:31Z biological_process owl:Class GO:0018575 biolink:NamedThing chlorocatechol 1,2-dioxygenase activity Catalysis of the reaction: 3,6-dichlorocatechol + O2 = 2 H+ + 2,5-dichloro-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0655|EC:1.13.11.- molecular_function owl:Class GO:0047605 biolink:NamedThing acetolactate decarboxylase activity Catalysis of the reaction: (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2. tmpzr1t_l9r_go_relaxed.owl (S)-2-hydroxy-2-methyl-3-oxobutanoate carboxy-lyase activity|(S)-2-hydroxy-2-methyl-3-oxobutanoate carboxy-lyase [(R)-2-acetoin-forming]|alpha-acetolactate decarboxylase activity EC:4.1.1.5|RHEA:21580|MetaCyc:ACETOLACTATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0086090 biolink:NamedThing voltage-gated potassium channel activity involved in SA node cell action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an SA node cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated potassium channel activity involved in sinoatrial node cell action potential|voltage-gated potassium channel activity involved in sinus node cell action potential|voltage-gated potassium channel activity involved in SAN cell action potential dph 2011-11-22T01:38:08Z molecular_function owl:Class GO:0036379 biolink:NamedThing myofilament Any of the smallest contractile units of a myofibril (striated muscle fiber). tmpzr1t_l9r_go_relaxed.owl striated muscle filament bf 2013-05-22T14:39:06Z cellular_component owl:Class GO:0036287 biolink:NamedThing response to iloperidone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iloperidone stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-16T05:01:29Z biological_process owl:Class GO:0036262 biolink:NamedThing granulysin production The appearance of granulysin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. bf 2012-06-18T02:11:15Z biological_process owl:Class GO:0090262 biolink:NamedThing regulation of transcription-coupled nucleotide-excision repair Any process that modulates the frequency, rate, or extent of the nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-03T04:27:42Z biological_process owl:Class GO:0048498 biolink:NamedThing establishment of petal orientation The process that determines the orientation of petals with reference to the central axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001098 biolink:NamedThing tetrasaccharide transport The directed movement of a tetrasaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:12:53Z biological_process owl:Class GO:0032564 biolink:NamedThing dATP binding Binding to dATP, deoxyadenosine triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000769 biolink:NamedThing syncytium formation by mitosis without cytokinesis The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by one or more rounds of nuclear division without cytokinesis. tmpzr1t_l9r_go_relaxed.owl syncytium formation by mitosis without cell division biological_process owl:Class GO:0010515 biolink:NamedThing negative regulation of induction of conjugation with cellular fusion Any process that stops, prevents, or reduces the frequency or rate of initiation of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015280 biolink:NamedThing ligand-gated sodium channel activity Enables the transmembrane transfer of a sodium ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ASIC activity|amiloride-sensitive sodium channel activity|epithelial sodium channel|acid-sensing ion channel activity Reactome:R-HSA-2672334 molecular_function owl:Class GO:0034172 biolink:NamedThing negative regulation of toll-like receptor 11 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 11 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 11 signalling pathway|negative regulation of TLR11 signaling pathway biological_process owl:Class GO:1990443 biolink:NamedThing peptidyl-threonine autophosphorylation The phosphorylation by a protein of one or more of its own threonine amino acid residues, or a threonine residue on an identical protein. tmpzr1t_l9r_go_relaxed.owl al 2014-08-02T15:08:41Z biological_process owl:Class GO:0048251 biolink:NamedThing elastic fiber assembly Assembly of the extracellular matrix fibers that enables the matrix to recoil after transient stretching. tmpzr1t_l9r_go_relaxed.owl elastin fibre assembly|elastin fiber assembly|elastic fibre assembly biological_process owl:Class GO:0030844 biolink:NamedThing positive regulation of intermediate filament depolymerization Any process that activates or increases the frequency, rate or extent of intermediate filament depolymerization. tmpzr1t_l9r_go_relaxed.owl up-regulation of intermediate filament depolymerization|up regulation of intermediate filament depolymerization|stimulation of intermediate filament depolymerization|activation of intermediate filament depolymerization|positive regulation of intermediate filament polymerization and/or depolymerization|upregulation of intermediate filament depolymerization Note that this term was split from 'positive regulation of intermediate filament polymerization and/or depolymerization ; GO:0045826' (sibling term 'positive regulation of intermediate filament polymerization ; GO:0030841'). biological_process owl:Class GO:0043697 biolink:NamedThing cell dedifferentiation The process in which a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors. tmpzr1t_l9r_go_relaxed.owl Note that this term should be used to annotate gene products involved in dedifferentiation that occurs as part of a normal process, such as regeneration. It should not be used for dedifferentiation that occurs in an abnormal or disease state such as cancer. biological_process owl:Class GO:0061036 biolink:NamedThing positive regulation of cartilage development Any process that increases the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T03:41:35Z biological_process owl:Class GO:0010568 biolink:NamedThing regulation of budding cell apical bud growth Any process that modulates the frequency, rate or extent of growth at the tip of a bud, in a cell that reproduces by budding. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900771 biolink:NamedThing fumitremorgin B catabolic process The chemical reactions and pathways resulting in the breakdown of fumitremorgin B. tmpzr1t_l9r_go_relaxed.owl Lanosulin degradation|Lanosulin catabolic process|Lanosulin breakdown|Lanosulin catabolism|fumitremorgin B catabolism|fumitremorgin B degradation|fumitremorgin B breakdown di 2012-06-04T09:25:43Z biological_process owl:Class GO:1904697 biolink:NamedThing regulation of acinar cell proliferation Any process that modulates the frequency, rate or extent of acinar cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of acinous cell proliferation|regulation of acinic cell proliferation sl 2015-09-30T15:19:50Z biological_process owl:Class GO:0004084 biolink:NamedThing branched-chain-amino-acid transaminase activity Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. tmpzr1t_l9r_go_relaxed.owl branched-chain aminotransferase activity|transaminase B activity|glutamate-branched-chain amino acid transaminase activity|L-branched chain amino acid aminotransferase activity|branched-chain-amino-acid:2-oxoglutarate aminotransferase activity|branched-chain amino acid-glutamate transaminase activity|branched-chain amino acid aminotransferase activity EC:2.6.1.42|Reactome:R-HSA-70724|Reactome:R-HSA-70723|Reactome:R-HSA-508179|Reactome:R-HSA-508189 molecular_function owl:Class GO:0102524 biolink:NamedThing tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity Catalysis of the reaction: 2-oxoglutarate + O2 + 7-[(3S)-(3-amino-3-carboxypropyl)]-wyosine37 in tRNAPhe = succinate + carbon dioxide + 7-(2-hydroxy-3-amino-3-carboxypropyl)-wyosine37 in tRNAPhe. tmpzr1t_l9r_go_relaxed.owl RHEA:37899|EC:1.14.11.42|MetaCyc:RXN-14538 molecular_function owl:Class GO:0045133 biolink:NamedThing 2,3-dihydroxybenzoate 3,4-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxybenzoate + O(2) = 2-hydroxy-3-(3-oxoprop-1-enyl)but-2-enedioate + H(+). tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybenzoic oxygenase activity|2,3-dihydroxybenzoate oxygenase activity|2,3-dihydroxybenzoate 1,2-dioxygenase activity|2,3-dihydroxybenzoate:oxygen 3,4-oxidoreductase (decyclizing)|o-pyrocatechuate oxygenase activity RHEA:18477|MetaCyc:1.13.11.14-RXN|EC:1.13.11.14|KEGG_REACTION:R01507 molecular_function owl:Class GO:1990383 biolink:NamedThing cellular response to biotin starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of biotin. tmpzr1t_l9r_go_relaxed.owl al 2014-05-21T10:06:58Z biological_process owl:Class GO:0015540 biolink:NamedThing 3-hydroxyphenyl propionate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 3-hydroxyphenyl propionate(out) + H+(out) = 3-hydroxyphenyl propionate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenyl propionate:hydrogen ion symporter activity|3-hydroxyphenyl propionate porter activity molecular_function owl:Class GO:0015551 biolink:NamedThing 3-hydroxyphenyl propanoate transmembrane transporter activity Enables the transfer of 3-hydroxyphenyl propanoate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenyl propionate transmembrane transporter activity molecular_function owl:Class GO:0000098 biolink:NamedThing sulfur amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. tmpzr1t_l9r_go_relaxed.owl sulfur amino acid degradation|sulfur amino acid breakdown|sulphur amino acid catabolic process|sulphur amino acid catabolism|sulfur amino acid catabolism biological_process owl:Class GO:0052130 biolink:NamedThing negative aerotaxis The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045625 biolink:NamedThing regulation of T-helper 1 cell differentiation Any process that modulates the frequency, rate or extent of T-helper 1 cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of T-helper 1 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0140372 biolink:NamedThing histone H3 ubiquitination The modification of histone H3 by the addition of one or more ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl histone H3 ubiquitylation pg 2019-10-03T15:29:54Z biological_process owl:Class GO:0018765 biolink:NamedThing 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase activity Catalysis of the reaction: cis,cis-2-hydroxy-6-oxohept-2,4-dienoate + OH- = cis-2-hydroxypenta-2,4-dienoate + acetate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2-OH-6-OXOHEPTA-2-4-DIENOATE-HYDR-RXN|UM-BBD_reactionID:r0263|RHEA:59220 molecular_function owl:Class GO:0060538 biolink:NamedThing skeletal muscle organ development The progression of a skeletal muscle organ over time from its initial formation to its mature state. A skeletal muscle organ includes the skeletal muscle tissue and its associated connective tissue. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:25:12Z biological_process owl:Class GO:1903342 biolink:NamedThing negative regulation of meiotic DNA double-strand break formation Any process that stops, prevents or reduces the frequency, rate or extent of meiotic DNA double-strand break formation. tmpzr1t_l9r_go_relaxed.owl down regulation of meiotic DNA double-strand break formation|inhibition of meiotic DNA double-strand break formation|downregulation of meiotic DNA double-strand break formation|down-regulation of meiotic DNA double-strand break formation mcc 2014-08-18T21:32:03Z biological_process owl:Class GO:0003918 biolink:NamedThing DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined, driven by ATP hydrolysis. The enzyme changes the linking number in multiples of 2. tmpzr1t_l9r_go_relaxed.owl DNA topoisomerase II|DNA topoisomerase II activity|DNA topoisomerase IV activity|topoisomerase|type II DNA topoisomerase activity|topoisomerase II|deoxyribonucleate topoisomerase|deoxyribonucleic topoisomerase activity|DNA topoisomerase (ATP-hydrolysing)|DNA topoisomerase type II activity MetaCyc:5.99.1.3-RXN|Wikipedia:Type_II_topoisomerase|EC:5.6.2.2 GO:0061505 molecular_function owl:Class GO:1904187 biolink:NamedThing regulation of transformation of host cell by virus Any process that modulates the frequency, rate or extent of transformation of host cell by virus. tmpzr1t_l9r_go_relaxed.owl regulation of viral transformation|regulation of viral transformation of host cell pga 2015-05-05T15:29:58Z biological_process owl:Class GO:0002143 biolink:NamedThing tRNA wobble position uridine thiolation The process in which a uridine residue at position 34 in the anticodon of a tRNA is post-transcriptionally thiolated at the C2 position. This process involves transfer of a sulfur from cysteine to position C2 by several steps. tmpzr1t_l9r_go_relaxed.owl wobble position s2U biosynthesis|tRNA wobble uridine thiolation In E. coli, the first step of the reaction is reductive elimination of sulfur from L-cysteine by IscS cysteine desulfurase to form an enzyme-bound cysteine-persulfide intermediate. Then, five essential gene products, TusA, TusB, TusC, TusD and TusE, mediate a sulfur relay that delivers the terminal sulfur of persulfide from IscS to MnmA12. The last protein, MnmA catalyzes the transfer of the sulfur from IscS to an ATP activated U34 of the tRNA. hjd 2009-05-06T05:05:40Z biological_process owl:Class GO:1905165 biolink:NamedThing regulation of lysosomal protein catabolic process Any process that modulates the frequency, rate or extent of lysosomal protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of cellular protein degradation in lysosome|regulation of proteolysis within lysosome|regulation of cellular protein catabolism in lysosome|regulation of lysosomal protein degradation|regulation of cellular protein catabolic process in lysosome|regulation of cellular protein breakdown in lysosome|regulation of lysosomal protein catabolism|regulation of lysosomal proteolysis bf 2016-04-26T12:10:01Z biological_process owl:Class GO:0016135 biolink:NamedThing saponin biosynthetic process The chemical reactions and pathways resulting in the formation of saponins, glycosides of plants in which the aglycan (sapogenin) group is a terpene or steroid and the sugar group is a glucose, a galactose, a pentose, a methylpentose or an oligosaccharide. Saponins are powerful surfactant agents and membrane active; they are, hence, toxic to animals on injection. tmpzr1t_l9r_go_relaxed.owl saponin anabolism|saponin biosynthesis|saponin formation|saponin synthesis biological_process owl:Class GO:0032023 biolink:NamedThing trypsinogen activation The proteolytic processing of trypsinogen to the active form, trypsin. tmpzr1t_l9r_go_relaxed.owl cleavage of trypsinogen to trypsin biological_process owl:Class GO:0102027 biolink:NamedThing S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity Catalysis of the reaction: 2-demethylmenaquinol-8 + S-adenosyl-L-methionine <=> menaquinol-8 + H+ + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.163|MetaCyc:ADOMET-DMK-METHYLTRANSFER-RXN|RHEA:30063 molecular_function owl:Class GO:0043983 biolink:NamedThing histone H4-K12 acetylation The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 12 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 acetylation at K12 biological_process owl:Class GO:0038138 biolink:NamedThing ERBB4-ERBB4 signaling pathway A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor ERBB4, followed by ligand-induced homodimerization of ERBB4 and transmission of the signal into the cell by the homodimeric ERBB4 complex. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ERBB4-ERBB4 signalling pathway|HER4-HER4 signaling pathway|ERBB4 homodimeric signaling pathway bf 2012-03-30T11:41:05Z biological_process owl:Class GO:0018678 biolink:NamedThing 4-hydroxybenzoate 1-hydroxylase activity Catalysis of the reaction: 4-hydroxybenzoate + NADPH + H+ + O2 = hydroquinone + NADP+ + H2O + CO2. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoate 1-monooxygenase activity|4-hydroxybenzoate,NAD(P)H:oxygen oxidoreductase (1-hydroxylating, decarboxylating) MetaCyc:1.14.13.64-RXN|EC:1.14.13.64|UM-BBD_reactionID:r0752 molecular_function owl:Class GO:0120126 biolink:NamedThing response to copper ion starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of copper ion. tmpzr1t_l9r_go_relaxed.owl krc 2018-02-12T19:49:19Z biological_process owl:Class GO:0060027 biolink:NamedThing convergent extension involved in gastrulation The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis usually resulting in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902694 biolink:NamedThing superoxide dismutase copper chaperone complex A protein complex which is capable of superoxide dismutase copper chaperone activity. tmpzr1t_l9r_go_relaxed.owl An example of this is CCS1 in Saccharomyces cerevisiae S288c (UniProt symbol P40202) in PMID:10426947. bhm 2014-02-18T11:13:45Z cellular_component owl:Class GO:1902695 biolink:NamedThing metallochaperone complex A protein complex which is capable of metallochaperone activity. tmpzr1t_l9r_go_relaxed.owl bhm 2014-02-18T11:34:40Z cellular_component owl:Class GO:0048057 biolink:NamedThing R3/R4 development The process whose specific outcome is the progression of the R3 and R4 pair of photoreceptors in the eye over time, from their formation to the mature structures. R3 and R4 are paired photoreceptors that contribute to the outer rhabdomeres. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086047 biolink:NamedThing membrane depolarization during Purkinje myocyte cell action potential The process in which Purkinje myocyte membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-16T10:54:47Z biological_process owl:Class GO:0042770 biolink:NamedThing signal transduction in response to DNA damage A cascade of processes induced by the detection of DNA damage within a cell. tmpzr1t_l9r_go_relaxed.owl response to DNA damage stimulus by intracellular signaling cascade|DNA damage response, signal transduction biological_process owl:Class GO:0098924 biolink:NamedThing retrograde trans-synaptic signaling by nitric oxide Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090306 biolink:NamedThing meiotic spindle assembly The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis. tmpzr1t_l9r_go_relaxed.owl spindle assembly involved in meiosis https://github.com/geneontology/go-ontology/issues/21349 tb 2010-04-09T11:21:56Z biological_process owl:Class GO:2000698 biolink:NamedThing positive regulation of epithelial cell differentiation involved in kidney development Any process that activates or increases the frequency, rate or extent of epithelial cell differentiation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-16T04:23:57Z biological_process owl:Class GO:0070368 biolink:NamedThing positive regulation of hepatocyte differentiation Any process that activates or increases the rate or extent of hepatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of hepatocyte differentiation|up-regulation of hepatocyte differentiation|positive regulation of liver cell differentiation|stimulation of hepatocyte differentiation|activation of hepatocyte differentiation|upregulation of hepatocyte differentiation biological_process owl:Class GO:0030627 biolink:NamedThing pre-mRNA 5'-splice site binding Binding to a pre-mRNA 5' splice site sequence. tmpzr1t_l9r_go_relaxed.owl pre-mRNA 5' splice site binding molecular_function owl:Class GO:1900046 biolink:NamedThing regulation of hemostasis Any process that modulates the frequency, rate or extent of hemostasis. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T03:23:38Z biological_process owl:Class GO:0047188 biolink:NamedThing aromatic-hydroxylamine O-acetyltransferase activity Catalysis of the reaction: N-hydroxy-4-aminobiphenyl + N-hydroxy-4-acetylaminonbiphenyl = N-acetoxy-4-aminobiphenyl + N-hydroxy-4-aminobiphenyl. tmpzr1t_l9r_go_relaxed.owl arylhydroxamic acyltransferase activity|N-hydroxy-2-acetylaminofluorene N-O acyltransferase activity|N-hydroxy-4-acetylaminobiphenyl:N-hydroxy-4-aminobiphenyl O-acetyltransferase activity|aromatic hydroxylamine acetyltransferase activity|arylhydroxamic acid N,O-acetyltransferase activity|arylhydroxamate acyltransferase activity|N,O-acetyltransferase activity EC:2.3.1.56|MetaCyc:2.3.1.56-RXN|RHEA:20325 molecular_function owl:Class GO:1905244 biolink:NamedThing regulation of modification of synaptic structure Any process that modulates the frequency, rate or extent of modification of synaptic structure. tmpzr1t_l9r_go_relaxed.owl regulation of synapse remodelling dos 2016-06-09T09:43:40Z biological_process owl:Class GO:0005986 biolink:NamedThing sucrose biosynthetic process The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl sucrose formation|sucrose biosynthesis|sucrose synthesis|sucrose anabolism MetaCyc:SUCSYN-PWY biological_process owl:Class GO:0005985 biolink:NamedThing sucrose metabolic process The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl sucrose metabolism biological_process owl:Class GO:2000033 biolink:NamedThing regulation of seed dormancy process Any process that modulates the frequency, rate or extent of seed dormancy process. tmpzr1t_l9r_go_relaxed.owl regulation of seed dormancy tb 2010-08-05T11:33:13Z biological_process owl:Class GO:2000034 biolink:NamedThing regulation of seed maturation Any process that modulates the frequency, rate or extent of seed maturation. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:33:33Z biological_process owl:Class GO:1902859 biolink:NamedThing propionyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of propionyl-CoA. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA degradation|propionyl-CoA catabolism|propionyl-CoA breakdown tt 2014-04-03T03:10:23Z biological_process owl:Class GO:0030701 biolink:NamedThing NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity Catalysis of the reaction: NAD+ + [dinitrogen reductase] = nicotinamide + ADP-D-ribosyl-[dinitrogen reductase]. tmpzr1t_l9r_go_relaxed.owl NAD--azoferredoxin (ADP-ribose)transferase activity|NAD+:[dinitrogen reductase] (ADP-D-ribosyl)transferase activity|ADP-ribosyltransferase activity|NAD-azoferredoxin (ADPribose)transferase activity|NAD-dinitrogen-reductase ADP-D-ribosyltransferase activity EC:2.4.2.37|RHEA:18077|MetaCyc:2.4.2.37-RXN molecular_function owl:Class GO:1903038 biolink:NamedThing negative regulation of leukocyte cell-cell adhesion Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl inhibition of leukocyte cell-cell adhesion|downregulation of leukocyte adhesion|inhibition of leukocyte cell adhesion|inhibition of leukocyte adhesion|down regulation of leukocyte cell-cell adhesion|downregulation of leukocyte cell-cell adhesion|down regulation of leukocyte cell adhesion|down-regulation of leukocyte cell adhesion|negative regulation of leukocyte adhesion|down regulation of leukocyte adhesion|downregulation of leukocyte cell adhesion|down-regulation of leukocyte adhesion|negative regulation of leukocyte cell adhesion|down-regulation of leukocyte cell-cell adhesion Exogenous expression of ASS1 or NOS3 in HUVECs enhances NO production and inhibits monocyte adhesion rl 2014-05-19T15:30:05Z biological_process owl:Class GO:0009383 biolink:NamedThing rRNA (cytosine-C5-)-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to cytosine to form 5-methylcytosine in small subunit ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl rRNA (cytosine-C5-967)-methyltransferase activity|rRNA m5C967 methyltransferase activity Reactome:R-HSA-6790944|Reactome:R-HSA-6793057 molecular_function owl:Class GO:0016434 biolink:NamedThing rRNA (cytosine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylcytosine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032357 biolink:NamedThing oxidized purine DNA binding Binding to a DNA region containing an oxidized purine residue. tmpzr1t_l9r_go_relaxed.owl oxidised purine DNA binding|oxidized purine nucleobase DNA binding|oxidized purine base DNA binding molecular_function owl:Class GO:0032356 biolink:NamedThing oxidized DNA binding Binding to a DNA region containing an oxidized residue. tmpzr1t_l9r_go_relaxed.owl oxidised DNA binding molecular_function owl:Class GO:0047448 biolink:NamedThing 5-dehydro-4-deoxyglucarate dehydratase activity Catalysis of the reaction: 5-dehydro-4-deoxy-D-glucarate + H(+) = 2,5-dioxopentanoate + CO(2) + H(2)O. tmpzr1t_l9r_go_relaxed.owl 5-keto-4-deoxy-glucarate dehydratase activity|deoxyketoglucarate dehydratase activity|5-dehydro-4-deoxy-D-glucarate hydro-lyase (decarboxylating; 2,5-dioxopentanoate-forming)|5-dehydro-4-deoxy-D-glucarate hydro-lyase (decarboxylating)|D-4-deoxy-5-ketoglucarate hydro-lyase activity KEGG_REACTION:R02279|RHEA:24608|EC:4.2.1.41|MetaCyc:4.2.1.41-RXN molecular_function owl:Class GO:0010989 biolink:NamedThing negative regulation of low-density lipoprotein particle clearance Any process that decreases the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-01T12:15:07Z biological_process owl:Class GO:0047230 biolink:NamedThing flavonol-3-O-glucoside L-rhamnosyltransferase activity Catalysis of the reaction: flavonol 3-O-D-glucoside + UDP-L-rhamnose = flavonol 3-O-L-rhamnosylglucoside + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphorhamnose-flavonol 3-O-glucoside rhamnosyltransferase activity|UDP-rhamnose:flavonol 3-O-glucoside rhamnosyltransferase activity|UDP-L-rhamnose:flavonol-3-O-D-glucoside 6''-O-L-rhamnosyltransferase activity EC:2.4.1.159|RHEA:22528|MetaCyc:2.4.1.159-RXN molecular_function owl:Class GO:1901079 biolink:NamedThing positive regulation of relaxation of muscle Any process that activates or increases the frequency, rate or extent of relaxation of muscle. tmpzr1t_l9r_go_relaxed.owl upregulation of relaxation of muscle|up-regulation of relaxation of muscle|up regulation of relaxation of muscle|activation of relaxation of muscle jl 2012-07-04T10:45:02Z biological_process owl:Class GO:0110125 biolink:NamedThing negative regulation of myotube cell migration Any process that stops, prevents, or reduces the frequency, rate or extent of myotube cell migration. tmpzr1t_l9r_go_relaxed.owl kmv 2018-08-22T21:12:47Z biological_process owl:Class GO:0045295 biolink:NamedThing gamma-catenin binding Binding to catenin complex gamma subunit. tmpzr1t_l9r_go_relaxed.owl plakoglobin binding molecular_function owl:Class GO:0010013 biolink:NamedThing N-1-naphthylphthalamic acid binding Binding to N-1-naphthylphthalamic acid, an auxin transport inhibitor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043991 biolink:NamedThing histone H2B-S14 phosphorylation The modification of histone H2B by the addition of an phosphate group to a serine residue at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2B phosphorylation at S14|histone H2BS14 phosphorylation biological_process owl:Class GO:0075037 biolink:NamedThing positive regulation of appressorium maturation Any process that activates or increases the frequency, rate or extent of symbiont appressorium maturation. tmpzr1t_l9r_go_relaxed.owl positive regulation of appressorium maturation on or near host|positive regulation maturation of appressorium on or near host biological_process owl:Class GO:0002096 biolink:NamedThing polkadots A punctate, filamentous structure composed of Bcl10 that appears in the cytoplasm of T-cells shortly after T-cell receptor stimulation. Polkadots stands for Punctate Oligomeric Killing and Activating DOmains Transducing Signals. tmpzr1t_l9r_go_relaxed.owl Note that polkadots also contains some amount of MALT1. Interaction with MALT1 is required for formation of the polkadots. cellular_component owl:Class GO:0018416 biolink:NamedThing nickel incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide The incorporation of nickel into a 3Fe-2S complex by tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide. tmpzr1t_l9r_go_relaxed.owl nickel incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido bis-L-glutamato L-histidino nickel triiron disulphide trioxide RESID:AA0292 biological_process owl:Class GO:0061671 biolink:NamedThing Cbp3p-Cbp6 complex A protein complex located at the mitochondrial ribosome tunnel exit that is involved in efficient translation and protein complex assembly. tmpzr1t_l9r_go_relaxed.owl dph 2014-11-18T15:08:30Z cellular_component owl:Class GO:0004595 biolink:NamedThing pantetheine-phosphate adenylyltransferase activity Catalysis of the reaction: ATP + pantetheine 4'-phosphate = 3'-dephospho-CoA + diphosphate. tmpzr1t_l9r_go_relaxed.owl ATP:pantetheine-4'-phosphate adenylyltransferase activity|dephospho-coenzyme A pyrophosphorylase activity|PPAT activity|ATP:pantetheine-phosphate adenylyltransferase activity|dephospho-CoA diphosphorylase activity|phosphopantetheine adenylyltransferase activity|3'-dephospho-CoA pyrophosphorylase activity|dephospho-CoA pyrophosphorylase activity|pantetheine phosphate adenylyltransferase activity EC:2.7.7.3|Reactome:R-HSA-196754|MetaCyc:PANTEPADENYLYLTRAN-RXN|RHEA:19801|KEGG_REACTION:R03035 molecular_function owl:Class GO:0098658 biolink:NamedThing inorganic anion import across plasma membrane The directed movement of inorganic anions from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl inorganic anion import into cell biological_process owl:Class GO:1902251 biolink:NamedThing negative regulation of erythrocyte apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of erythrocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of RBC apoptotic process|down regulation of erythrocyte apoptotic process|downregulation of erythrocyte apoptosis|down regulation of red blood cell apoptosis|inhibition of erythrocyte apoptosis|down regulation of RBC apoptotic process|inhibition of erythrocyte apoptotic process|downregulation of RBC apoptotic process|downregulation of red blood cell apoptotic process|down-regulation of red blood cell apoptotic process|negative regulation of red blood cell apoptotic process|down-regulation of erythrocyte apoptotic process|inhibition of red blood cell apoptosis|inhibition of red blood cell apoptotic process|downregulation of red blood cell apoptosis|negative regulation of erythrocyte apoptosis|down regulation of erythrocyte apoptosis|negative regulation of RBC apoptosis|negative regulation of red blood cell apoptosis|down-regulation of red blood cell apoptosis|down-regulation of RBC apoptotic process|inhibition of RBC apoptosis|down-regulation of RBC apoptosis|downregulation of RBC apoptosis|down regulation of red blood cell apoptotic process|down-regulation of erythrocyte apoptosis|down regulation of RBC apoptosis|negative regulation of RBC apoptotic process|downregulation of erythrocyte apoptotic process rl 2013-06-20T19:30:59Z biological_process owl:Class GO:1905503 biolink:NamedThing regulation of motile cilium assembly Any process that modulates the frequency, rate or extent of motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl regulation of nodal cilium formation|regulation of motile primary cilia assembly|regulation of motile primary cilium assembly|regulation of nodal cilium assembly|regulation of motile primary cilium formation|regulation of motile primary cilia formation krc 2016-09-27T18:27:47Z biological_process owl:Class GO:0042250 biolink:NamedThing maintenance of polarity of embryonic epithelium The maintenance of an established polarized embryonic epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016332 biolink:NamedThing establishment or maintenance of polarity of embryonic epithelium Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization of epithelial cells in an embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046880 biolink:NamedThing regulation of follicle-stimulating hormone secretion Any process that modulates the frequency, rate or extent of the regulated release of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl regulation of FSH secretion|regulation of follicle stimulating hormone secretion biological_process owl:Class GO:0050458 biolink:NamedThing decylhomocitrate synthase activity Catalysis of the reaction: 2-oxoglutarate + H(2)O + lauroyl-CoA = (3S,4S)-3-hydroxytetradecane-1,3,4-tricarboxylate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl dodecanoyl-CoA:2-oxoglutarate C-dodecanoyltransferase (thioester-hydrolysing, 1-carboxyundecyl-forming)|2-decylhomocitrate synthase activity|3-hydroxytetradecane-1,3,4-tricarboxylate 2-oxoglutarate-lyase (CoA-acylating)|3-hydroxytetradecane-1,3,4-tricarboxylate 2-oxoglutarate-lyase (CoA- acylating) activity MetaCyc:DECYLHOMOCITRATE-SYNTHASE-RXN|EC:2.3.3.4|RHEA:10364|KEGG_REACTION:R03859 molecular_function owl:Class GO:0019278 biolink:NamedThing UDP-N-acetylgalactosamine catabolic process The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylgalactosamine breakdown|UDP-N-acetylgalactosamine catabolism|UDP-N-acetylgalactosamine degradation biological_process owl:Class GO:1903279 biolink:NamedThing regulation of calcium:sodium antiporter activity Any process that modulates the frequency, rate or extent of calcium:sodium antiporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of sodium:calcium exchange|regulation of sodium/calcium exchanger|regulation of mitochondrial sodium/calcium ion exchange rl 2014-08-11T12:53:30Z biological_process owl:Class GO:0034167 biolink:NamedThing regulation of toll-like receptor 10 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 10 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR10 signaling pathway|regulation of toll-like receptor 10 signalling pathway biological_process owl:Class GO:1902762 biolink:NamedThing regulation of embryonic skeletal joint development Any process that modulates the frequency, rate or extent of embryonic skeletal joint development. tmpzr1t_l9r_go_relaxed.owl mr 2014-03-07T17:46:01Z biological_process owl:Class GO:0035374 biolink:NamedThing chondroitin sulfate binding Binding to chondroitin sulfate, a glycosaminoglycan made up of two alternating monosaccharides: D-glucuronic acid (GlcA) and N-acetyl-D-galactosamine (GalNAc). tmpzr1t_l9r_go_relaxed.owl bf 2010-03-12T10:25:34Z molecular_function owl:Class GO:0001974 biolink:NamedThing blood vessel remodeling The reorganization or renovation of existing blood vessels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905611 biolink:NamedThing negative regulation of mRNA cap binding Any process that stops, prevents or reduces the frequency, rate or extent of mRNA cap binding. tmpzr1t_l9r_go_relaxed.owl downregulation of mRNA cap binding|inhibition of mRNA cap binding|down regulation of mRNA cap binding|down-regulation of mRNA cap binding bc 2016-10-28T11:27:36Z biological_process owl:Class GO:0061123 biolink:NamedThing negative regulation of positive chemotaxis to cAMP Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:27:20Z biological_process owl:Class GO:1904095 biolink:NamedThing negative regulation of endosperm development Any process that stops, prevents or reduces the frequency, rate or extent of endosperm development. tmpzr1t_l9r_go_relaxed.owl down-regulation of endosperm development|inhibition of endosperm development|downregulation of endosperm development|down regulation of endosperm development tb 2015-03-26T22:07:25Z biological_process owl:Class GO:0015937 biolink:NamedThing coenzyme A biosynthetic process The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl coenzyme A anabolism|coenzyme A biosynthesis|CoA biosynthesis|coenzyme A synthesis|coenzyme A formation MetaCyc:PWY-4221|MetaCyc:PANTOSYN-PWY|MetaCyc:COA-PWY GO:0006764 biological_process owl:Class GO:0031689 biolink:NamedThing A3 adenosine receptor binding Binding to an A3 adenosine receptor. tmpzr1t_l9r_go_relaxed.owl A3 adenosine receptor ligand molecular_function owl:Class GO:0031685 biolink:NamedThing adenosine receptor binding Binding to an adenosine receptor. tmpzr1t_l9r_go_relaxed.owl adenosine receptor ligand molecular_function owl:Class GO:0009944 biolink:NamedThing polarity specification of adaxial/abaxial axis The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038048 biolink:NamedThing dynorphin receptor activity Combining with a dynorphin peptide, and transmitting the signal across the membrane by activating an associated G-protein. Dynorphin is any opioid peptide that is generated by cleavage of the precursor protein prodynorphin. tmpzr1t_l9r_go_relaxed.owl kappa-opioid receptor activity bf 2011-11-14T01:48:02Z molecular_function owl:Class GO:0006533 biolink:NamedThing aspartate catabolic process The chemical reactions and pathways resulting in the breakdown of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid. tmpzr1t_l9r_go_relaxed.owl aspartate degradation|aspartate breakdown|aspartate catabolism biological_process owl:Class GO:0042836 biolink:NamedThing D-glucarate metabolic process The chemical reactions and pathways involving D-glucarate, the D-enantiomer of glucarate. D-glucarate is derived from either D-glucose or L-gulose. tmpzr1t_l9r_go_relaxed.owl saccharate metabolic process|D-glucarate metabolism|saccharate metabolism biological_process owl:Class GO:0033094 biolink:NamedThing butane-1,4-diamine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: putrescine + 2-oxoglutarate = L-glutamate + 1-pyrroline + H2O. tmpzr1t_l9r_go_relaxed.owl PAT activity|YgjG|putrescine transaminase activity|putrescine:alpha-ketoglutarate aminotransferase activity|putrescine-alpha-ketoglutarate transaminase activity|putrescine aminotransferase activity|putrescine:2-oxoglutarate aminotransferase activity EC:2.6.1.82|MetaCyc:2.6.1.82-RXN|RHEA:12268 molecular_function owl:Class GO:1905167 biolink:NamedThing positive regulation of lysosomal protein catabolic process Any process that activates or increases the frequency, rate or extent of lysosomal protein catabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular protein breakdown in lysosome|up regulation of proteolysis within lysosome|upregulation of proteolysis within lysosome|up regulation of lysosomal proteolysis|up regulation of cellular protein catabolism in lysosome|up-regulation of proteolysis within lysosome|activation of lysosomal protein catabolic process|activation of lysosomal protein catabolism|up-regulation of lysosomal protein catabolic process|positive regulation of cellular protein catabolic process in lysosome|activation of proteolysis within lysosome|upregulation of lysosomal proteolysis|up-regulation of cellular protein degradation in lysosome|upregulation of cellular protein breakdown in lysosome|up-regulation of cellular protein catabolism in lysosome|up-regulation of lysosomal proteolysis|positive regulation of lysosomal protein degradation|up-regulation of cellular protein catabolic process in lysosome|upregulation of cellular protein catabolism in lysosome|positive regulation of lysosomal protein catabolism|up regulation of cellular protein breakdown in lysosome|upregulation of cellular protein degradation in lysosome|up regulation of cellular protein catabolic process in lysosome|upregulation of cellular protein catabolic process in lysosome|up regulation of lysosomal protein degradation|positive regulation of proteolysis within lysosome|up-regulation of lysosomal protein catabolism|positive regulation of cellular protein degradation in lysosome|positive regulation of lysosomal proteolysis|up regulation of lysosomal protein catabolic process|up regulation of cellular protein degradation in lysosome|upregulation of lysosomal protein catabolism|up-regulation of cellular protein breakdown in lysosome|up-regulation of lysosomal protein degradation|positive regulation of cellular protein catabolism in lysosome|activation of cellular protein degradation in lysosome|activation of lysosomal protein degradation|up regulation of lysosomal protein catabolism|activation of cellular protein catabolic process in lysosome|upregulation of lysosomal protein degradation|activation of cellular protein breakdown in lysosome|upregulation of lysosomal protein catabolic process|activation of lysosomal proteolysis|activation of cellular protein catabolism in lysosome bf 2016-04-26T12:10:19Z biological_process owl:Class GO:1990785 biolink:NamedThing response to water-immersion restraint stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of water immersion while being held immobile. tmpzr1t_l9r_go_relaxed.owl response to immobilization stress combined with water immersion sl 2015-06-24T18:27:28Z biological_process owl:Class GO:0035902 biolink:NamedThing response to immobilization stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile. tmpzr1t_l9r_go_relaxed.owl response to immobilisation stress|response to restraint stress bf 2011-06-22T09:45:50Z biological_process owl:Class GO:0044381 biolink:NamedThing glucose import in response to insulin stimulus The directed movement of the hexose monosaccharide glucose into a cell as a result of an insulin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular glucose import in response to insulin stimulus jl 2011-12-08T02:44:01Z biological_process owl:Class GO:0070748 biolink:NamedThing interleukin-35 receptor binding Binding to an interleukin-35 receptor. tmpzr1t_l9r_go_relaxed.owl IL-35|interleukin-35 receptor ligand mah 2009-06-23T01:21:54Z molecular_function owl:Class GO:0071623 biolink:NamedThing negative regulation of granulocyte chemotaxis Any process that decreases the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T04:13:19Z biological_process owl:Class GO:0046314 biolink:NamedThing phosphocreatine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase. tmpzr1t_l9r_go_relaxed.owl phosphocreatine biosynthesis|phosphocreatine formation|phosphocreatine synthesis|phosphocreatine anabolism biological_process owl:Class GO:0042396 biolink:NamedThing phosphagen biosynthetic process The chemical reactions and pathways resulting in the formation of phosphagen, any of a group of guanidine phosphates that occur in muscle and can be used to regenerate ATP from ADP during muscular contraction. tmpzr1t_l9r_go_relaxed.owl phosphagen anabolism|phosphagen biosynthesis|phosphagen synthesis|phosphagen formation biological_process owl:Class GO:0036308 biolink:NamedThing 16S rRNA (guanine(1516)-N(2))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(1516) in 16S rRNA = N(2)-methylguanosine(1516) in 16S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T14:17:44Z molecular_function owl:Class GO:0044469 biolink:NamedThing envenomation resulting in positive regulation of blood coagulation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant activation, maintenance or an increase in the frequency, rate or extent of blood coagulation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T01:29:09Z biological_process owl:Class GO:0019631 biolink:NamedThing quinate catabolic process The chemical reactions and pathways resulting in the breakdown of quinate, the anion of quinic acid. tmpzr1t_l9r_go_relaxed.owl quinate catabolism|quinic acid catabolic process|quinate degradation|quinic acid catabolism|quinate breakdown MetaCyc:QUINATEDEG-PWY biological_process owl:Class GO:0019630 biolink:NamedThing quinate metabolic process The chemical reactions and pathways involving quinate, the anion of quinic acid. The acid occurs commonly in plants, either free or as esters, and is used as a medicine. tmpzr1t_l9r_go_relaxed.owl quinic acid metabolic process|quinate metabolism|quinic acid metabolism biological_process owl:Class GO:0021726 biolink:NamedThing lateral reticular nucleus development The process whose specific outcome is the progression of the lateral reticular nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019490 biolink:NamedThing 2-aminobenzenesulfonate desulfonation The removal of the sulfonate group from 2-aminobenzenesulfonate, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzenesulphonate desulphonation MetaCyc:2ASDEG-PWY biological_process owl:Class GO:0102347 biolink:NamedThing trans-arachidon-2-enoyl-CoA reductase activity Catalysis of the reaction: icosanoyl-CoA(4-) + NADP(3-) <=> trans-2-icosenoyl-CoA(4-) + NADPH(4-) + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13306 molecular_function owl:Class GO:0016716 biolink:NamedThing oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and one atom of oxygen is incorporated into one donor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.18.- molecular_function owl:Class GO:0045428 biolink:NamedThing regulation of nitric oxide biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide. tmpzr1t_l9r_go_relaxed.owl regulation of nitric oxide synthesis|regulation of nitric oxide anabolism|regulation of nitric oxide biosynthesis|regulation of nitric oxide formation biological_process owl:Class GO:0034784 biolink:NamedThing pivalyl-CoA mutase activity Catalysis of the reaction: pivalyl-CoA = 3-methylbutyryl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:5.4.99.-|UM-BBD_reactionID:r1033 molecular_function owl:Class GO:0046011 biolink:NamedThing regulation of oskar mRNA translation Any process that modulates the frequency, rate or extent of oskar mRNA translation. To ensure the localization of Oskar protein at the posterior pole of the oocyte, translation of oskar mRNA is repressed during its transport to the posterior pole and activated upon localization of the mRNA at the posterior cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008288 biolink:NamedThing boss receptor activity Combining with a protein bride of sevenless (boss) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl sevenless receptor activity molecular_function owl:Class GO:0032435 biolink:NamedThing negative regulation of proteasomal ubiquitin-dependent protein catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl down-regulation of proteasomal ubiquitin-dependent protein catabolic process|inhibition of proteasomal ubiquitin-dependent protein catabolic process|down regulation of proteasomal ubiquitin-dependent protein catabolic process|downregulation of proteasomal ubiquitin-dependent protein catabolic process biological_process owl:Class GO:0071634 biolink:NamedThing regulation of transforming growth factor beta production Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta. tmpzr1t_l9r_go_relaxed.owl regulation of TGFB production|regulation of TGF-beta production|regulation of TGFbeta production|regulation of TGF-B production|regulation of transforming growth factor-beta secretion|regulation of transforming growth factor-beta production mah 2010-02-12T10:33:07Z GO:2001201 biological_process owl:Class GO:0033575 biolink:NamedThing protein glycosylation at cell surface The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid at the surface of a cell. tmpzr1t_l9r_go_relaxed.owl protein amino acid glycosylation at cell surface biological_process owl:Class GO:0009977 biolink:NamedThing proton motive force dependent protein transmembrane transporter activity Catalysis of the transfer of proteins from one side of a membrane to the other. Transportation is dependent on pH gradient across the membrane. tmpzr1t_l9r_go_relaxed.owl pH-dependent protein transporter activity|arginine targeting transmembrane transporter activity|twin-arginine targeting transmembrane transporter activity|delta-pH-dependent protein transporter activity GO:0015557 molecular_function owl:Class GO:1901065 biolink:NamedThing syringal lignin catabolic process The chemical reactions and pathways resulting in the breakdown of syringal lignin. tmpzr1t_l9r_go_relaxed.owl syringal lignin catabolism|syringal lignin breakdown|S-lignin catabolic process|syringal lignin degradation tt 2012-06-29T03:48:33Z biological_process owl:Class GO:0035186 biolink:NamedThing syncytial blastoderm mitotic cell cycle Mitotic division cycles 10 to 13 of the insect embryo. This is the second phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis. The majority of migrating nuclei reach the embryo surface during cycle 10, after which they divide less synchronously than before, and the syncytial blastoderm cycles lengthen progressively. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120134 biolink:NamedThing proximal portion of axoneme The portion of the axoneme that is close to the base of the cilium. tmpzr1t_l9r_go_relaxed.owl proximal part of axoneme krc 2018-03-10T01:41:06Z cellular_component owl:Class GO:1905849 biolink:NamedThing negative regulation of forward locomotion Any process that stops, prevents or reduces the frequency, rate or extent of forward locomotion. tmpzr1t_l9r_go_relaxed.owl down regulation of forward locomotion|downregulation of forward locomotion|inhibition of forward locomotion|down-regulation of forward locomotion rz 2017-01-23T11:03:55Z biological_process owl:Class GO:0055012 biolink:NamedThing ventricular cardiac muscle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a ventricular cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ. tmpzr1t_l9r_go_relaxed.owl ventricular cardiomyocyte differentiation|ventricular heart muscle cell differentiation biological_process owl:Class GO:0031481 biolink:NamedThing myosin XI complex A myosin complex containing a dimer of class XI myosin heavy chains and associated light chains. Myosin XI heavy chain sizes are similar in molecular structure to the class V myosins with 5 to 6 IQ motifs and tail regions with predicted coiled coil domains (forming dimeric molecules) and large C-terminal regions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032053 biolink:NamedThing ciliary basal body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ciliary basal body, a short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum). tmpzr1t_l9r_go_relaxed.owl microtubule basal body organisation|microtubule basal body organization and biogenesis|microtubule basal body organization biological_process owl:Class GO:0072315 biolink:NamedThing metanephric glomerular epithelial cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular epithelial cell. Metanephric glomerular epithelial cells are specialized epithelial cells that form part of the metanephric glomerulus; there are two types, metanephric glomerular parietal epithelial cells and metanephric glomerular visceral epithelial cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T07:03:50Z biological_process owl:Class GO:0055017 biolink:NamedThing cardiac muscle tissue growth The increase in size or mass of a cardiac muscle, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. tmpzr1t_l9r_go_relaxed.owl heart muscle growth biological_process owl:Class GO:1905372 biolink:NamedThing ceramide phosphoethanolamine catabolic process The chemical reactions and pathways resulting in the breakdown of ceramide phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl ceramide phosphoethanolamine degradation|ceramide phosphoethanolamine breakdown|ceramide phosphoethanolamine catabolism hjd 2016-08-16T17:11:04Z biological_process owl:Class GO:1905371 biolink:NamedThing ceramide phosphoethanolamine metabolic process The chemical reactions and pathways involving ceramide phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl ceramide phosphoethanolamine metabolism hjd 2016-08-16T17:10:56Z biological_process owl:Class GO:0018629 biolink:NamedThing 2-hydroxyquinoline 5,6-dioxygenase activity Catalysis of the reaction: quinolin-2-ol + NADH + H+ + O2 = 2,5,6-trihydroxy-5,6-dihydroquinoline + NAD+. tmpzr1t_l9r_go_relaxed.owl 2-oxo-1,2-dihydroquinoline 5,6-dioxygenase activity|quinolin-2-ol,NADH:oxygen oxidoreductase (5,6-hydroxylating)|quinolin-2(1H)-one 5,6-dioxygenase activity|quinolin-2-ol 5,6-dioxygenase activity UM-BBD_reactionID:r0052|MetaCyc:1.14.12.16-RXN|RHEA:10976|EC:1.14.12.16 molecular_function owl:Class GO:0046830 biolink:NamedThing positive regulation of RNA import into nucleus Any process that activates or increases the frequency, rate or extent of movement of RNA from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of RNA-nucleus import|upregulation of RNA import into nucleus|up-regulation of RNA import into nucleus|up regulation of RNA import into nucleus|positive regulation of RNA import into cell nucleus|stimulation of RNA import into nucleus|activation of RNA import into nucleus|positive regulation of RNA transport from cytoplasm to nucleus biological_process owl:Class GO:0097170 biolink:NamedThing ADP-L-glycero-beta-D-manno-heptose metabolic process The chemical reactions and pathways involving ADP-L-glycero-beta-D-manno-heptose, an ADP-L-glycero-D-manno-heptose having beta-configuration at the anomeric centre of the heptose. ADP-L-glycero-beta-D-manno-heptose (also called ADP-L-beta-D-heptose or ADP-L-glycero-D-manno-heptose) is a nucleotide-sugar precursor of the inner core lipopolysaccharide (LPS) from D-glycero-beta-D-manno-heptose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl ADP-L-glycero-beta-D-manno-heptose metabolism pr 2011-10-03T09:12:58Z biological_process owl:Class GO:2000644 biolink:NamedThing regulation of receptor catabolic process Any process that modulates the frequency, rate or extent of receptor catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of receptor breakdown|regulation of receptor degradation|regulation of receptor catabolism vk 2011-04-21T11:20:18Z biological_process owl:Class GO:0098573 biolink:NamedThing intrinsic component of mitochondrial membrane The component of the mitochondrial membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to mitochondrial membrane cellular_component owl:Class GO:0031522 biolink:NamedThing cell envelope Sec protein transport complex A transmembrane protein complex involved in the translocation of proteins across the cytoplasmic membrane. In Gram-negative bacteria, Sec-translocated proteins are subsequently secreted via the type II, IV, or V secretion systems. Sec complex components include SecA, D, E, F, G, Y and YajC. tmpzr1t_l9r_go_relaxed.owl Sec complex|plasma membrane Sec complex|Sec translocation complex|Sec secretion complex Note that this term represents the protein complex involved in transport of proteins across the cytoplasmic membrane. For proteins involved in bacterial type II secretion across the outer membrane, consider annotating to 'type II protein secretion complex ; GO:0015628'. For proteins involved in Sec-complex dependent translocation into the eukaryotic endoplasmic reticulum, consider annotating to 'endoplasmic reticulum Sec complex ; GO:0031205'. cellular_component owl:Class GO:0090562 biolink:NamedThing protein-N(PI)-phosphohistidine-N,N'-diacetylchitobiose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N,N'-diacetylchitobiose(out) = protein histidine + N,N'-diacetylchitobiose phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-04-08T14:55:02Z molecular_function owl:Class GO:0046845 biolink:NamedThing branched duct epithelial cell fate determination, open tracheal system Allocation of a set number of cells to each primary branch in an open tracheal system, prior to the onset of cell migration. This establishes different domains of cells within the tracheal placode. tmpzr1t_l9r_go_relaxed.owl branch cell fate determination biological_process owl:Class GO:1904352 biolink:NamedThing positive regulation of protein catabolic process in the vacuole Any process that activates or increases the frequency, rate or extent of protein catabolic process in the vacuole. tmpzr1t_l9r_go_relaxed.owl up regulation of protein catabolic process in the vacuole|upregulation of vacuolar protein catabolic process|up-regulation of protein catabolic process in the vacuole|up-regulation of vacuolar protein catabolism|activation of vacuolar protein degradation|activation of vacuolar protein breakdown|up-regulation of vacuolar protein degradation|activation of vacuolar protein catabolism|positive regulation of vacuolar protein catabolic process|up-regulation of vacuolar protein catabolic process|upregulation of vacuolar protein breakdown|up regulation of vacuolar protein catabolism|positive regulation of vacuolar protein degradation|positive regulation of vacuolar protein catabolism|upregulation of protein catabolic process in the vacuole|upregulation of vacuolar protein catabolism|up regulation of vacuolar protein degradation|positive regulation of vacuolar protein breakdown|upregulation of vacuolar protein degradation|up regulation of vacuolar protein breakdown|up regulation of vacuolar protein catabolic process|activation of vacuolar protein catabolic process|up-regulation of vacuolar protein breakdown|activation of protein catabolic process in the vacuole rl 2015-06-12T09:10:49Z biological_process owl:Class GO:0102598 biolink:NamedThing 3alpha-hydroxy-ent-sandaracopimardiene 7-beta-monooxygenase activity Catalysis of the reaction: ent-sandaracopimaradien-3-beta-ol + NADPH + H+ + O2 <=> oryzalexin D + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:41472|MetaCyc:RXN-15382|EC:1.14.14.123 molecular_function owl:Class GO:1902628 biolink:NamedThing positive regulation of assembly of large subunit precursor of preribosome Any process that activates or increases the frequency, rate or extent of assembly of a large subunit precursor of preribosome. tmpzr1t_l9r_go_relaxed.owl up regulation of 66S preribosome formation|positive regulation of 66S preribosome formation|up regulation of assembly of large subunit precursor of preribosome|up-regulation of 66S preribosome formation|up-regulation of assembly of large subunit precursor of preribosome|up-regulation of 66S preribosome assembly|up regulation of preribosome, large subunit precursor formation|upregulation of preribosome, large subunit precursor formation|upregulation of assembly of large subunit precursor of preribosome|up regulation of 66S preribosome assembly|positive regulation of preribosome, large subunit precursor formation|activation of 66S preribosome assembly|positive regulation of 66S preribosome assembly|activation of 66S preribosome formation|activation of preribosome, large subunit precursor formation|activation of assembly of large subunit precursor of preribosome|upregulation of 66S preribosome formation|upregulation of 66S preribosome assembly|up-regulation of preribosome, large subunit precursor formation tb 2014-01-16T22:11:55Z biological_process owl:Class GO:0005358 biolink:NamedThing high-affinity glucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose + H+ = glucose + H+. This activity is constitutive and therefore always present, regardless of demand. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity hydrogen/glucose transporter activity|high-affinity hydrogen:glucose symporter activity|high-affinity hydrogen:glucose transporter activity molecular_function owl:Class GO:2000967 biolink:NamedThing negative regulation of cell wall polysaccharide catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cell wall polysaccharide catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell wall polysaccharide breakdown tt 2011-08-01T02:30:33Z biological_process owl:Class GO:0015750 biolink:NamedThing pentose transmembrane transport The process in which pentose is transported across a lipid bilayer, from one side of a membrane to the other. A pentose is any aldose with a chain of five carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl pentose transport biological_process owl:Class GO:1904786 biolink:NamedThing negative regulation of asymmetric protein localization involved in cell fate determination Any process that stops, prevents or reduces the frequency, rate or extent of asymmetric protein localization involved in cell fate determination. tmpzr1t_l9r_go_relaxed.owl downregulation of asymmetric protein localization involved in cell fate commitment|negative regulation of asymmetric protein localization resulting in cell fate commitment|down-regulation of asymmetric protein localization resulting in cell fate commitment|downregulation of asymmetric protein localization involved in cell fate determination|negative regulation of cell fate commitment, asymmetric protein localization|downregulation of cell fate commitment, asymmetric protein localization|down regulation of asymmetric protein localization resulting in cell fate commitment|down regulation of cell fate commitment, asymmetric protein localization|inhibition of cell fate commitment, asymmetric protein localization|down regulation of asymmetric protein localization involved in cell fate determination|down regulation of asymmetric protein localization involved in cell fate commitment|negative regulation of asymmetric protein localization involved in cell fate commitment|downregulation of asymmetric protein localization resulting in cell fate commitment|inhibition of asymmetric protein localization involved in cell fate determination|down-regulation of asymmetric protein localization involved in cell fate commitment|inhibition of asymmetric protein localization involved in cell fate commitment|downregulation of asymmetric protein localisation involved in cell fate determination|down-regulation of asymmetric protein localisation involved in cell fate determination|negative regulation of asymmetric protein localisation involved in cell fate determination|down-regulation of asymmetric protein localization involved in cell fate determination|down regulation of asymmetric protein localisation involved in cell fate determination|inhibition of asymmetric protein localisation involved in cell fate determination|down-regulation of cell fate commitment, asymmetric protein localization|inhibition of asymmetric protein localization resulting in cell fate commitment wrm-1 in C. Elegans (Q10953) in PMID:17476329 (IMP) es 2015-11-03T12:11:13Z biological_process owl:Class GO:0034359 biolink:NamedThing mature chylomicron A chylomicron that contains apolipoprotein C2 (APOC2), a cofactor for lipoprotein lipase (LPL) activity, and has a mean diameter of 500 nm and density of 0.95g/ml. Mature chylomicron particles transport exogenous (dietary) lipids from the intestines to other body tissues, via the blood and lymph. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005762 biolink:NamedThing mitochondrial large ribosomal subunit The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site). tmpzr1t_l9r_go_relaxed.owl 39S ribosomal subunit, mitochondrial cellular_component owl:Class GO:0039023 biolink:NamedThing pronephric duct morphogenesis The process in which the anatomical structures of the pronephric duct are generated and organized. The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the kidney. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T10:18:09Z biological_process owl:Class GO:0045881 biolink:NamedThing positive regulation of sporulation resulting in formation of a cellular spore Any process that activates or increases the frequency, rate or extent of sporulation. tmpzr1t_l9r_go_relaxed.owl upregulation of sporulation|stimulation of sporulation|up regulation of sporulation|up-regulation of sporulation|activation of sporulation biological_process owl:Class GO:0097210 biolink:NamedThing response to gonadotropin-releasing hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin-releasing hormone stimulus. Gonadotropin-releasing hormone (GnRH) is a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl response to GnRH pr 2012-01-09T08:48:56Z biological_process owl:Class GO:0001139 biolink:NamedThing RNA polymerase II complex recruiting activity Binding to an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way in order to facilitate the aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. tmpzr1t_l9r_go_relaxed.owl core RNA polymerase II recruiting transcription factor activity|transcription factor activity, core RNA polymerase II recruiting krc 2011-01-20T05:55:01Z molecular_function owl:Class GO:0102382 biolink:NamedThing rebaudioside B glucosyltransferase activity Catalysis of the reaction: rebaudioside B + UDP-alpha-D-glucose <=> rebaudioside A + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13518 molecular_function owl:Class GO:1990054 biolink:NamedThing response to temozolomide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temozolomide stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. pr 2013-02-22T10:09:44Z biological_process owl:Class GO:0070578 biolink:NamedThing RISC-loading complex A trimeric protein complex required for the formation of a mature RNA-induced silencing complex (RISC). In humans the complex is composed of the endonuclease Dicer (DICER1), TRBP (TARBP2) and the Argonaute protein Ago2 (EIF2C2/AGO2). Within the complex, Dicer and TRBP are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto Ago2. Ago2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from Dicer and TRBP. This complex has endoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl microRNA loading complex|RLC|miRLC mah 2009-04-22T01:40:19Z cellular_component owl:Class GO:0046436 biolink:NamedThing D-alanine metabolic process The chemical reactions and pathways involving D-alanine, the D-enantiomer of the amino acid alanine, i.e. (2R)-2-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-alanine metabolism biological_process owl:Class GO:1905404 biolink:NamedThing positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process Any process that activates or increases the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|positive regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|up regulation of activated CD8-positive, alpha-beta T-cell apoptosis|up-regulation of activated CD8-positive, alpha-beta T cell apoptosis|upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|activation of activated CD8-positive, alpha-beta T-cell apoptotic process|up regulation of activated CD8-positive, alpha-beta T cell apoptotic process|upregulation of activated CD8-positive, alpha-beta T cell apoptotic process|activation of activated CD8-positive, alpha-beta T-cell apoptosis|up-regulation of activated CD8-positive, alpha-beta T-cell apoptosis|upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|upregulation of activated CD8-positive, alpha-beta T cell apoptosis|up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|positive regulation of activated CD8-positive, alpha-beta T cell apoptosis|upregulation of activated CD8-positive, alpha-beta T-cell apoptotic process|activation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|activation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|activation of activated CD8-positive, alpha-beta T cell apoptotic process|upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|up regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|activation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|upregulation of activated CD8-positive, alpha-beta T-cell apoptosis|positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|activation of activated CD8-positive, alpha-beta T cell apoptosis|up-regulation of activated CD8-positive, alpha-beta T cell apoptotic process|positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|positive regulation of activated CD8-positive, alpha-beta T-cell apoptosis|up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|up regulation of activated CD8-positive, alpha-beta T cell apoptosis|up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|activation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|up-regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis pga 2016-08-25T09:14:10Z biological_process owl:Class GO:0051747 biolink:NamedThing cytosine C-5 DNA demethylase activity Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA. tmpzr1t_l9r_go_relaxed.owl DNA methyltransferase activity acting on cytosine C-5|hydrolytic DNA demethylase activity|DNA demethylase activity molecular_function owl:Class GO:0102690 biolink:NamedThing isopentenyladenine UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + N(6)-dimethylallyladenine = H+ + 9-(alpha-D-glucosyl)-N(6)-isopentenyladenine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4728 molecular_function owl:Class GO:0106055 biolink:NamedThing mannosyl-oligosaccharide 1,2-alpha-mannosidase complex A protein complex capable of catalysing the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in an oligo-mannose oligosaccharide. tmpzr1t_l9r_go_relaxed.owl An example is MNL1 (P38888) in Saccharomyces cerevisiae. PMID:19124653 (by physical interaction evidence). hjd 2017-09-14T15:23:28Z cellular_component owl:Class GO:0090599 biolink:NamedThing alpha-glucosidase activity Catalysis of the hydrolysis of terminal, non-reducing alpha-linked alpha-D-glucose residue with release of alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9036727|EC:3.2.1.20|Reactome:R-HSA-9036729 tb 2014-08-22T14:33:31Z molecular_function owl:Class GO:0019544 biolink:NamedThing arginine catabolic process to glutamate The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate. tmpzr1t_l9r_go_relaxed.owl arginine degradation to glutamate|arginine breakdown to glutamate MetaCyc:ARGASEDEG-PWY|MetaCyc:ARG-GLU-PWY biological_process owl:Class GO:0070769 biolink:NamedThing alphaIIb-beta3 integrin-CIB complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to CIB, a protein that binds calcium as well as the alphaIIb-beta3 integrin. tmpzr1t_l9r_go_relaxed.owl ITGA2B-ITGB3-CIB1 complex mah 2009-06-29T05:20:01Z cellular_component owl:Class GO:0017126 biolink:NamedThing nucleologenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a nucleolus, a small, dense body one or more of which are present in the nucleus of eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl nucleolus biogenesis|nucleolus assembly biological_process owl:Class GO:0034552 biolink:NamedThing respiratory chain complex II assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex II. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061975 biolink:NamedThing articular cartilage development The process whose specific outcome is the progression of articular cartilage over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl articular cartilage of joint development dph 2018-02-12T19:57:31Z biological_process owl:Class GO:0010697 biolink:NamedThing negative regulation of mitotic spindle pole body separation Any process that decreases the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of SPB separation biological_process owl:Class GO:0010695 biolink:NamedThing regulation of mitotic spindle pole body separation Any process that modulates the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl regulation of SPB separation biological_process owl:Class GO:0034706 biolink:NamedThing sodium channel complex An ion channel complex through which sodium ions pass. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034272 biolink:NamedThing phosphatidylinositol 3-kinase complex, class III, type II A class III phosphatidylinositol 3-kinase complex that is involved in vacuolar protein sorting (VPS) via endosomes. In budding yeast, this complex consists of Vps30p, Vps34p, Vps38 and Vps15p. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase complex II|PtdIns-3-kinase complex II Note that this term should not be confused with '1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; GO:0005943' or '1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex ; GO:0005944'. cellular_component owl:Class GO:0009768 biolink:NamedThing photosynthesis, light harvesting in photosystem I After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052543 biolink:NamedThing callose deposition in cell wall Any process in which callose is transported to, and/or maintained in, the cell wall. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. tmpzr1t_l9r_go_relaxed.owl callose localization in cell wall|cell wall callose deposition|cell wall callose localization biological_process owl:Class GO:0007141 biolink:NamedThing male meiosis I A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline. tmpzr1t_l9r_go_relaxed.owl male meiosis I nuclear division biological_process owl:Class GO:0002876 biolink:NamedThing positive regulation of chronic inflammatory response to antigenic stimulus Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl stimulation of chronic inflammatory response to antigenic stimulus|upregulation of chronic inflammatory response to antigenic stimulus|up regulation of chronic inflammatory response to antigenic stimulus|up-regulation of chronic inflammatory response to antigenic stimulus|activation of chronic inflammatory response to antigenic stimulus biological_process owl:Class GO:1903652 biolink:NamedThing modulation by virus of host cytoplasmic transport Modulation by an infecting virus of host cytoplasmic transport. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host cytoplasmic transport|regulation by virus of host cytoplasmic streaming|viral modulation of host cytoplasmic trafficking jl 2014-11-24T17:22:04Z biological_process owl:Class GO:1990608 biolink:NamedThing mitotic spindle pole body localization A process in which a mitotic spindle pole body is transported to, or maintained in, a specific cellular location. tmpzr1t_l9r_go_relaxed.owl spindle pole body localisation in nuclear envelope|spindle pole body localization in nuclear envelope|spindle pole body localization to nuclear envelope|mitotic spindle pole body localization to nuclear envelope|spindle pole body positioning|spindle pole body docking|establishment of spindle pole body localisation|establishment of spindle pole body localization|establishment and maintenance of spindle pole body localization https://github.com/geneontology/go-ontology/issues/19149 vw 2009-05-06T02:35:32Z GO:0071789|GO:0070632 biological_process owl:Class GO:0046482 biolink:NamedThing para-aminobenzoic acid metabolic process The chemical reactions and pathways involving para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. tmpzr1t_l9r_go_relaxed.owl p-aminobenzoic acid metabolic process|PABA metabolism|vitamin Bx metabolic process|p-aminobenzoic acid metabolism|vitamin Bx metabolism|4-aminobenzoic acid metabolism|para-aminobenzoic acid metabolism|4-aminobenzoic acid metabolic process|PABA metabolic process biological_process owl:Class GO:0019742 biolink:NamedThing pentacyclic triterpenoid metabolic process The chemical reactions and pathways involving pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. tmpzr1t_l9r_go_relaxed.owl pentacyclic triterpenoid metabolism biological_process owl:Class GO:0045302 biolink:NamedThing choloylglycine hydrolase activity Catalysis of the reaction: 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholan-24-oylglycine + H2O = 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholanate + glycine. tmpzr1t_l9r_go_relaxed.owl choloyltaurine hydrolase activity|bile salt hydrolase activity|glycocholase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine amidohydrolase activity MetaCyc:CHOLOYLGLYCINE-HYDROLASE-RXN|RHEA:19353|EC:3.5.1.24 molecular_function owl:Class GO:2000180 biolink:NamedThing negative regulation of androgen biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of androgen biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of androgen synthesis|negative regulation of androgen formation|negative regulation of androgen anabolism|negative regulation of androgen biosynthesis dph 2010-10-13T12:43:17Z biological_process owl:Class GO:1904865 biolink:NamedThing positive regulation of beta-catenin-TCF complex assembly Any process that activates or increases the frequency, rate or extent of beta-catenin-TCF complex assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of beta-catenin/T-cell factor complex formation|upregulation of beta-catenin/T-cell factor complex formation|activation of beta-catenin/T-cell factor complex assembly|positive regulation of beta-catenin/LEF complex assembly|up-regulation of beta-catenin/T-cell factor complex formation|up regulation of beta-catenin/T-cell factor complex assembly|up-regulation of beta-catenin-TCF complex formation|up-regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|upregulation of beta-catenin/lymphoid enhancer binding factor complex assembly|positive regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|positive regulation of beta-catenin/lymphoid enhancer binding factor complex formation|activation of beta-catenin-TCF complex assembly|upregulation of beta-catenin/LEF complex formation|up regulation of beta-catenin/lymphoid enhancer binding factor complex formation|up regulation of beta-catenin-TCF complex formation|up regulation of beta-catenin-TCF complex assembly|activation of beta-catenin-TCF complex formation|positive regulation of beta-catenin/T-cell factor complex assembly|activation of beta-catenin/T-cell factor complex formation|up regulation of beta-catenin/LEF complex assembly|positive regulation of beta-catenin/LEF complex formation|up regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|upregulation of beta-catenin-TCF complex formation|up regulation of beta-catenin/T-cell factor complex formation|upregulation of beta-catenin/T-cell factor complex assembly|up-regulation of beta-catenin/LEF complex formation|up-regulation of beta-catenin/lymphoid enhancer binding factor complex formation|activation of beta-catenin/lymphoid enhancer binding factor complex assembly|upregulation of beta-catenin-TCF complex assembly|activation of beta-catenin/lymphoid enhancer binding factor complex formation|up-regulation of beta-catenin-TCF complex assembly|activation of beta-catenin/LEF complex formation|up-regulation of beta-catenin/LEF complex assembly|positive regulation of beta-catenin-TCF complex formation|upregulation of beta-catenin/LEF complex assembly|up-regulation of beta-catenin/T-cell factor complex assembly|upregulation of beta-catenin/lymphoid enhancer binding factor complex formation|up regulation of beta-catenin/LEF complex formation|activation of beta-catenin/LEF complex assembly bf 2015-12-17T13:50:53Z biological_process owl:Class GO:0047578 biolink:NamedThing 4-hydroxyglutamate transaminase activity Catalysis of the reaction: 4-hydroxy-L-glutamate + 2-oxoglutarate = 4-hydroxy-2-oxoglutarate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-L-glutamate:2-oxoglutarate aminotransferase activity|4-hydroxyglutamate aminotransferase activity Reactome:R-HSA-6784393|MetaCyc:4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN|RHEA:10480|EC:2.6.1.23 molecular_function owl:Class GO:0032941 biolink:NamedThing secretion by tissue The controlled release of a substance by a tissue. tmpzr1t_l9r_go_relaxed.owl tissue secretion|expulsion of gland contents biological_process owl:Class GO:0031001 biolink:NamedThing response to brefeldin A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brefeldin A stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031691 biolink:NamedThing alpha-1A adrenergic receptor binding Binding to an alpha-1A adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-1A adrenergic receptor ligand molecular_function owl:Class GO:0051368 biolink:NamedThing peptidyl-threonine octanoylation The octanoylation of peptidyl-threonine to form peptidyl-O3-octanoyl-L-threonine, typical of the protein ghrelin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0386 biological_process owl:Class GO:1901675 biolink:NamedThing negative regulation of histone H3-K27 acetylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K27 acetylation. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3K27 acetylation|inhibition of histone H3K27 acetylation|down-regulation of histone H3-K27 acetylation|downregulation of histone H3-K27 acetylation|negative regulation of histone H3K27 acetylation|negative regulation of histone H3 acetylation at K27|inhibition of histone H3-K27 acetylation|inhibition of histone H3 acetylation at K27|downregulation of histone H3K27 acetylation|downregulation of histone H3 acetylation at K27|down regulation of histone H3K27 acetylation|down regulation of histone H3-K27 acetylation|down regulation of histone H3 acetylation at K27|down-regulation of histone H3 acetylation at K27 vk 2012-11-22T12:06:40Z biological_process owl:Class GO:0102845 biolink:NamedThing 1-18:3-2-16:0-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:3-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8307 molecular_function owl:Class GO:0005901 biolink:NamedThing caveola A membrane raft that forms small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Examples include flask-shaped invaginations of the plasma membrane in adipocytes associated with caveolin proteins, and minute pits or incuppings of the cell membrane formed during pinocytosis. Caveolae may be pinched off to form free vesicles within the cytoplasm. tmpzr1t_l9r_go_relaxed.owl caveolar membrane|caveolae Wikipedia:Caveolae GO:0016599 cellular_component owl:Class GO:1904770 biolink:NamedThing intramembranous bone morphogenesis The developmental process by which an intramembranous bone is generated and organized. tmpzr1t_l9r_go_relaxed.owl intramembranous bones morphogenesis|membrane bone morphogenesis dos 2015-10-28T11:46:04Z biological_process owl:Class GO:0070152 biolink:NamedThing mitochondrial isoleucyl-tRNA aminoacylation The process of coupling isoleucine to isoleucyl-tRNA in a mitochondrion, catalyzed by isoleucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006428 biolink:NamedThing isoleucyl-tRNA aminoacylation The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. The isoleucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a isoleucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019695 biolink:NamedThing choline metabolic process The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl choline metabolism biological_process owl:Class GO:0033241 biolink:NamedThing regulation of cellular amine catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines. tmpzr1t_l9r_go_relaxed.owl regulation of amine breakdown|regulation of amine catabolism|regulation of amine degradation biological_process owl:Class GO:1900623 biolink:NamedThing regulation of monocyte aggregation Any process that modulates the frequency, rate or extent of monocyte aggregation. tmpzr1t_l9r_go_relaxed.owl regulation of mononuclear phagocyte aggregation vk 2012-05-21T01:07:17Z biological_process owl:Class GO:0020036 biolink:NamedThing Maurer's cleft A disk-like structure that appears at the periphery of a red blood cell infected by an apicomplexan parasite, characterized by a translucent lumen and an electron-dense coat of variable thickness; often appears to be tethered to the host cell membrane by fibrous connections with the erythrocyte cytoskeleton. tmpzr1t_l9r_go_relaxed.owl Maurers cleft cellular_component owl:Class GO:0035446 biolink:NamedThing cysteine-glucosaminylinositol ligase activity Catalysis of the reaction: 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol + L-cysteine + ATP = 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside + AMP + diphosphate + 2 H+. 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol is also known as glucosaminyl-inositol or GlcN-Ins, and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as desacetylmycothiol or Cys-GlcN-Ins. tmpzr1t_l9r_go_relaxed.owl MshC ligase|L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase|desacetylmycothiol synthase RHEA:26176|MetaCyc:RXN1G-4|EC:6.3.1.13 bf 2010-04-14T11:33:06Z molecular_function owl:Class GO:0032759 biolink:NamedThing positive regulation of TRAIL production Any process that activates or increases the frequency, rate, or extent of TRAIL production. tmpzr1t_l9r_go_relaxed.owl stimulation of TRAIL production|positive regulation of TRAIL biosynthetic process|upregulation of TRAIL production|activation of TRAIL production|up-regulation of TRAIL production|up regulation of TRAIL production GO:0045556 biological_process owl:Class GO:0098731 biolink:NamedThing skeletal muscle satellite stem cell maintenance involved in skeletal muscle regeneration Any process by which the number of skeletal muscle satellite stem cells in a skeletal muscle is maintained during skeletal muscle regeneration. There are at least two mechanisms by which this is achieved. Skeletal muscle satellite stem cell asymmetric division ensures satellite stem cell numbers are kept constant. Symmetric division of these cells amplifies the number of skeletal muscle satellite stem cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014834 biolink:NamedThing skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration Any process by which the number of skeletal muscle satellite cells in a skeletal muscle is maintained during muscle regeneration. There are at least three mechanisms by which this is achieved. Skeletal muscle satellite stem cell asymmetric division ensures satellite stem cell numbers are kept constant. Symmetric division of these cells amplifies the number of skeletal muscle satellite stem cells. Some adult skeletal muscle myoblasts (descendants of activated satellite cells) can develop back into quiescent satellite cells, replenishing the overall pool of satellite cells. tmpzr1t_l9r_go_relaxed.owl satellite cell compartment self-renewal involved in skeletal muscle regeneration|satellite cell population maintenance|satellite cell self-renewal biological_process owl:Class GO:0002877 biolink:NamedThing regulation of acute inflammatory response to non-antigenic stimulus Any process that modulates the frequency, rate, or extent of an acute inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003919 biolink:NamedThing FMN adenylyltransferase activity Catalysis of the reaction: ATP + FMN = diphosphate + FAD. tmpzr1t_l9r_go_relaxed.owl riboflavin adenine dinucleotide pyrophosphorylase activity|adenosine triphosphate-riboflavin mononucleotide transadenylase activity|flavin adenine dinucleotide synthetase activity|riboflavine adenine dinucleotide adenylyltransferase activity|riboflavin mononucleotide adenylyltransferase activity|FAD diphosphorylase activity|FAD pyrophosphorylase activity|FAD synthetase activity|ATP:FMN adenylyltransferase activity|adenosine triphosphate-riboflavine mononucleotide transadenylase activity RHEA:17237|MetaCyc:FADSYN-RXN|KEGG_REACTION:R00161|EC:2.7.7.2|Reactome:R-HSA-196929 molecular_function owl:Class GO:1900010 biolink:NamedThing regulation of corticotropin-releasing hormone receptor activity Any process that modulates the frequency, rate or extent of corticotropin-releasing hormone receptor activity. tmpzr1t_l9r_go_relaxed.owl regulation of CRF receptor activity|regulation of CRH receptor activity|regulation of adrenocorticotropin-releasing hormone receptor activity|regulation of corticotropin-releasing factor receptor activity pr 2012-01-10T02:27:23Z biological_process owl:Class GO:0098901 biolink:NamedThing regulation of cardiac muscle cell action potential Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell. This typically occurs via modulation of the activity or expression of voltage-gated ion channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140544 biolink:NamedThing septin collar organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising the septin collar. tmpzr1t_l9r_go_relaxed.owl cellular bud neck septin hourglass organization https://github.com/geneontology/go-ontology/issues/19534 pg 2020-11-10T13:47:48Z biological_process owl:Class GO:0032185 biolink:NamedThing septin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising septin complexes and their associated proteins. tmpzr1t_l9r_go_relaxed.owl septin cytoskeleton organisation|septin cytoskeleton organization and biogenesis biological_process owl:Class GO:0009230 biolink:NamedThing thiamine catabolic process The chemical reactions and pathways resulting in the breakdown of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. tmpzr1t_l9r_go_relaxed.owl thiamine catabolism|vitamin B1 catabolism|vitamin B1 catabolic process|thiamine breakdown|thiamine degradation|thiamin catabolic process biological_process owl:Class GO:0062163 biolink:NamedThing pseudohyphal septin ring assembly The aggregation, arrangement and bonding together of septins and associated proteins to form a tight ring-shaped structure that forms in the division plane at the junction between the mother cell and a pseudohyphal projection. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-07T15:46:26Z biological_process owl:Class GO:1900698 biolink:NamedThing regulation of o-orsellinic acid biosynthetic process Any process that modulates the frequency, rate or extent of o-orsellinic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of o-orsellinic acid formation|regulation of o-orsellinic acid biosynthesis|regulation of o-orsellinic acid synthesis|regulation of o-orsellinic acid anabolism di 2012-05-22T04:56:46Z biological_process owl:Class GO:0090178 biolink:NamedThing regulation of establishment of planar polarity involved in neural tube closure Any process that modulates the rate, frequency, or extent of the establishment of planar polarity involved in neural tube closure, the coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-14T11:14:27Z biological_process owl:Class GO:0000820 biolink:NamedThing regulation of glutamine family amino acid metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. tmpzr1t_l9r_go_relaxed.owl regulation of glutamine family amino acid metabolism biological_process owl:Class GO:0008779 biolink:NamedThing acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity Catalysis of the reaction: acyl-[acyl-carrier protein] + O-(2-acyl-sn-glycero-3-phospho)ethanolamine = [acyl-carrier protein] + O-(1-beta-acyl-2-acyl-sn-glycero-3-phospho)ethanolamine. tmpzr1t_l9r_go_relaxed.owl acyl-ACP-phospholipid O-acyltransferase activity|acyl-acyl-carrier-protein:O-(2-acyl-sn-glycero-3-phospho)-ethanolamine O-acyltransferase activity|acyl-acyl-carrier-protein-phospholipid O-acyltransferase activity|acyl-[acyl-carrier protein]-phospholipid O-acyltransferase activity MetaCyc:ACYLGPEACYLTRANS-RXN|RHEA:10304|EC:2.3.1.40 molecular_function owl:Class GO:0004363 biolink:NamedThing glutathione synthase activity Catalysis of the reaction: L-gamma-glutamyl-L-cysteine + ATP + glycine = ADP + glutathione + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)|glutathione synthetase activity|GSH synthetase activity Reactome:R-HSA-5602901|RHEA:13557|MetaCyc:GLUTATHIONE-SYN-RXN|Reactome:R-HSA-174394|KEGG_REACTION:R00497|EC:6.3.2.3 molecular_function owl:Class GO:0019354 biolink:NamedThing siroheme biosynthetic process The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. tmpzr1t_l9r_go_relaxed.owl siroheme synthesis|siroheme anabolism|siroheme synthase activity|sirohaem biosynthesis|siroheme formation|sirohaem biosynthetic process|siroheme biosynthesis MetaCyc:PWY-5194 biological_process owl:Class GO:0044179 biolink:NamedThing hemolysis in other organism The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another. tmpzr1t_l9r_go_relaxed.owl hemolysis of cells in other organism|hemolysis of erythrocytes in other organism|hemolysis of RBCs in other organism|hemolysis of red blood cells in other organism jl 2009-09-04T03:36:00Z biological_process owl:Class GO:0047101 biolink:NamedThing 2-oxoisovalerate dehydrogenase (acylating) activity Catalysis of the reaction: NAD+ + CoA + 2-keto-isovalerate = NADH + CO2 + isobutyryl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-oxoisovalerate dehydrogenase activity|3-methyl-2-oxobutanoate:NAD+ 2-oxidoreductase (CoA-methyl-propanoylating) EC:1.2.1.25|MetaCyc:1.2.1.25-RXN|RHEA:13997 molecular_function owl:Class GO:0031961 biolink:NamedThing cortisol receptor binding Binding to a cortisol receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035259 biolink:NamedThing glucocorticoid receptor binding Binding to a glucocorticoid receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102225 biolink:NamedThing 4,4'-diaponeurosporene desaturase activity Catalysis of the reaction: 4,4'-diaponeurosporene + FAD + H+ <=> 4,4'-diapolycopene + FADH2. tmpzr1t_l9r_go_relaxed.owl RHEA:31407|MetaCyc:RXN-12258 molecular_function owl:Class GO:1990197 biolink:NamedThing methionine-importing ABC transporter complex An ATP-binding cassette (ABC) transporter complex that is capable of methionine-importing activity. An example is the bacterial MetNIQ methionine transporter, that consists of the dimeric ATPase subunit MetN located at the cytoplasmic side of the plasma membrane and the dimeric transmembrane subunit MetI. MetQ is regarded as the periplasmic methionine-binding chaperon subunit, and is capable of transporting methionine from the periplasm into the cytoplasm in an ATP-dependent manner. tmpzr1t_l9r_go_relaxed.owl MetNIQ transport complex|ATP-dependent methionine importer complex|ATP-binding cassette (ABC) methionine importer complex|MetNIQ transporter|MetNIQ complex|ATP-dependent methionine importing complex|methionine transporter complex, ATP-dependent|MetNIQ transporter complex|MetNI transport complex|ATP-dependent methionine-importing complex|methionine transporter|MetNI complex|methionine transporter complex|methionine transport complex|MetNI transporter complex|MetNI transporter https://github.com/geneontology/go-ontology/issues/21619 bhm 2013-09-26T09:38:26Z cellular_component owl:Class GO:1904386 biolink:NamedThing response to L-phenylalanine derivative Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-phenylalanine derivative stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T17:56:19Z biological_process owl:Class GO:0033916 biolink:NamedThing beta-agarase activity Catalysis of the hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, giving the tetramer as the predominant product. tmpzr1t_l9r_go_relaxed.owl agarose 3-glycanohydrolase activity|agarose 4-glycanohydrolase activity|AgaB|agarase activity|AgaA EC:3.2.1.81 molecular_function owl:Class GO:0036015 biolink:NamedThing response to interleukin-3 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-3 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-3 bf 2011-10-12T10:08:26Z biological_process owl:Class GO:0045158 biolink:NamedThing electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity Enables the directed movement of electrons within the cytochrome b6/f complex of photosystem II. tmpzr1t_l9r_go_relaxed.owl cytochrome|cytochrome b6|cytochrome b/b6|cytochrome f molecular_function owl:Class GO:0008050 biolink:NamedThing female courtship behavior The behavior of a female, for the purpose of attracting a sexual partner. tmpzr1t_l9r_go_relaxed.owl female courtship behaviour biological_process owl:Class GO:0044584 biolink:NamedThing cellodextrin binding Binding to a cellodextrin, a glucose polymer of 2 or more glucose monomers. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-24T04:52:05Z molecular_function owl:Class GO:0061482 biolink:NamedThing response to irinotecan Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an irinotecan stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:15:03Z biological_process owl:Class GO:0015707 biolink:NamedThing nitrite transport The directed movement of nitrite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004949 biolink:NamedThing cannabinoid receptor activity Combining with a cannabinoid to initiate a change in cell activity. Cannabinoids are a class of diverse chemical compounds that include the endocannabinoids and the phytocannabinoids. tmpzr1t_l9r_go_relaxed.owl endocannabinoid receptor activity|cannaboid receptor molecular_function owl:Class GO:0033565 biolink:NamedThing ESCRT-0 complex A protein complex required for the recycling of Golgi proteins, formation of lumenal membranes and sorting of ubiquitinated proteins into those membranes. This complex includes Vps1p and Hse1p in yeast and the Hrs and STAM proteins in mammals. tmpzr1t_l9r_go_relaxed.owl Vps27p-Hse1p complex|Hrs/STAM complex cellular_component owl:Class GO:0035522 biolink:NamedThing monoubiquitinated histone H2A deubiquitination The removal of the ubiquitin group from a monoubiquitinated histone H2A protein. tmpzr1t_l9r_go_relaxed.owl monoubiquitinated histone H2A deubiquitinylation|monoubiquitinated histone H2A deubiquitylation bf 2010-05-04T04:32:53Z biological_process owl:Class GO:0035521 biolink:NamedThing monoubiquitinated histone deubiquitination The removal of the ubiquitin group from a monoubiquitinated histone protein. tmpzr1t_l9r_go_relaxed.owl monoubiquitinated histone deubiquitylation|monoubiquitinated histone deubiquitinylation bf 2010-05-04T04:32:04Z biological_process owl:Class GO:0070083 biolink:NamedThing clathrin-sculpted monoamine transport vesicle membrane The lipid bilayer surrounding a clathrin-sculpted monoamine transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted monoamine transport vesicle membrane|clathrin sculpted monoamine constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0120046 biolink:NamedThing regulation of protein localization to medial cortical node Any process that modulates the frequency, rate or extent of protein localization to a medial cortical node. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-02T17:29:23Z biological_process owl:Class GO:0019428 biolink:NamedThing allantoin biosynthetic process The chemical reactions and pathways resulting in the formation of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. tmpzr1t_l9r_go_relaxed.owl allantoin synthesis|allantoin biosynthesis|allantoin formation|allantoin anabolism MetaCyc:URSIN-PWY biological_process owl:Class GO:0061809 biolink:NamedThing NAD+ nucleotidase, cyclic ADP-ribose generating Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose that proceeds in a stepwise fashion by ADP-ribosyl cyclase activity followed by cyclic ADP-ribose hydrolase activity. tmpzr1t_l9r_go_relaxed.owl EC:3.2.2.6|MetaCyc:NADNUCLEOSID-RXN dph 2016-11-11T13:14:13Z molecular_function owl:Class GO:0016432 biolink:NamedThing tRNA-uridine aminocarboxypropyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA uridine = 5'-methylthioadenosine + tRNA 3-(3-amino-3-carboxypropyl)-uridine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA-uridine 3-(3-amino-3-carboxypropyl)transferase activity RHEA:12300|EC:2.5.1.25|MetaCyc:2.5.1.25-RXN molecular_function owl:Class GO:0044643 biolink:NamedThing envenomation resulting in positive regulation of complement activation, alternative pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of complement activation via the alternative pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-11T11:56:48Z biological_process owl:Class GO:0044642 biolink:NamedThing envenomation resulting in modulation of complement activation, alternative pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation via the alternative pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of complement activation, alternative pathway in other organism jl 2012-07-11T11:53:12Z biological_process owl:Class GO:0032780 biolink:NamedThing negative regulation of ATP-dependent activity Any process that stops or reduces the rate of an ATP-dependent activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATPase activity|down regulation of ATPase activity|down-regulation of ATPase activity|negative regulation of adenosinetriphosphatase activity|inhibition of ATPase activity|downregulation of ATPase activity https://github.com/geneontology/go-ontology/issues/22371 biological_process owl:Class GO:0047332 biolink:NamedThing diphosphate-serine phosphotransferase activity Catalysis of the reaction: L-serine + diphosphate = O-phospho-L-serine + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl diphosphate:L-serine O-phosphotransferase activity|pyrophosphate--serine phosphotransferase activity|pyrophosphate-L-serine phosphotransferase activity KEGG_REACTION:R00584|MetaCyc:2.7.1.80-RXN|RHEA:23764|EC:2.7.1.80 molecular_function owl:Class GO:0051537 biolink:NamedThing 2 iron, 2 sulfur cluster binding Binding to a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. tmpzr1t_l9r_go_relaxed.owl iron-sulphur cluster 2Fe-2S binding|iron-sulfur cluster 2Fe-2S binding|diiron disulfide cluster binding|2Fe-2S cluster binding|diiron disulphide cluster binding|2 iron, 2 sulphur cluster binding|2 Fe 2 S cluster binding molecular_function owl:Class GO:0070656 biolink:NamedThing mechanoreceptor differentiation involved in mechanosensory epithelium regeneration Differentiation of new mechanoreceptors to replace those lost or destroyed by injury. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:08:13Z biological_process owl:Class GO:0071424 biolink:NamedThing rRNA (cytosine-N4-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N4-methylcytosine. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-15T03:46:52Z molecular_function owl:Class GO:0061313 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in heart development The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands and contributing to the progression of the heart over time. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in heart development dph 2010-09-24T08:15:08Z biological_process owl:Class GO:0001900 biolink:NamedThing positive regulation of cytolysis by symbiont of host cells Any process in which an organism activates or increases the frequency, rate or extent of cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by symbiont of cytolysis of host cells|upregulation by symbiont of cytolysis of host cells|up regulation by symbiont of cytolysis of host cells|stimulation by symbiont of cytolysis of host cells|positive regulation by symbiont of cytolysis of host cells|activation by symbiont of cytolysis of host cells biological_process owl:Class GO:1901412 biolink:NamedThing positive regulation of tetrapyrrole biosynthetic process from glutamate Any process that activates or increases the frequency, rate or extent of tetrapyrrole biosynthetic process from glutamate. tmpzr1t_l9r_go_relaxed.owl activation of tetrapyrrole biosynthetic process from glutamate|upregulation of tetrapyrrole formation from glutamate|activation of tetrapyrrole anabolism from glutamate|positive regulation of tetrapyrrole biosynthesis from glutamate|upregulation of tetrapyrrole anabolism from glutamate|positive regulation of tetrapyrrole synthesis from glutamate|up regulation of tetrapyrrole synthesis from glutamate|up-regulation of tetrapyrrole synthesis from glutamate|upregulation of tetrapyrrole biosynthetic process from glutamate|up-regulation of tetrapyrrole anabolism from glutamate|up-regulation of tetrapyrrole formation from glutamate|upregulation of tetrapyrrole synthesis from glutamate|up regulation of tetrapyrrole formation from glutamate|up-regulation of tetrapyrrole biosynthetic process from glutamate|upregulation of tetrapyrrole biosynthesis from glutamate|up regulation of tetrapyrrole anabolism from glutamate|positive regulation of tetrapyrrole formation from glutamate|positive regulation of tetrapyrrole anabolism from glutamate|up-regulation of tetrapyrrole biosynthesis from glutamate|up regulation of tetrapyrrole biosynthesis from glutamate|activation of tetrapyrrole biosynthesis from glutamate|up regulation of tetrapyrrole biosynthetic process from glutamate|activation of tetrapyrrole synthesis from glutamate|activation of tetrapyrrole formation from glutamate tt 2012-10-01T16:22:21Z biological_process owl:Class GO:1903703 biolink:NamedThing enterocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an enterocyte. tmpzr1t_l9r_go_relaxed.owl cls 2014-12-03T15:08:51Z biological_process owl:Class GO:0009697 biolink:NamedThing salicylic acid biosynthetic process The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. tmpzr1t_l9r_go_relaxed.owl salicylate biosynthetic process|salicylic acid biosynthesis|salicylic acid formation|salicylic acid anabolism|salicylic acid synthesis MetaCyc:PWY-981 biological_process owl:Class GO:0046537 biolink:NamedThing 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D glycerate; this reaction does not require the cofactor 2,3-bisphosphoglycerate. tmpzr1t_l9r_go_relaxed.owl PGAM-i molecular_function owl:Class GO:0017044 biolink:NamedThing melanocyte-stimulating hormone activity The action characteristic of melanocyte-stimulating hormone, any of three peptide hormones that are produced by the intermediate lobe of the pituitary gland and, upon receptor binding, cause dispersal of melanosomes in melanophores of poikilothermic vertebrates. tmpzr1t_l9r_go_relaxed.owl alpha-melanocyte stimulating hormone activity|melanocyte stimulating hormone activity|alpha-melanophore stimulating hormone activity molecular_function owl:Class GO:0005179 biolink:NamedThing hormone activity The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process. tmpzr1t_l9r_go_relaxed.owl peptide hormone|lipopeptide hormone|glycopeptide hormone|cAMP generating peptide activity Also consider annotating to 'receptor agonist activity ; GO:0048018'. molecular_function owl:Class GO:1904431 biolink:NamedThing positive regulation of t-circle formation Any process that activates or increases the frequency, rate or extent of t-circle formation. tmpzr1t_l9r_go_relaxed.owl upregulation of telomeric circle formation|up regulation of t-circle formation|positive regulation of telomeric circle formation|activation of t-circle formation|upregulation of t-circle formation|up-regulation of telomeric circle formation|activation of telomeric circle formation|up regulation of telomeric circle formation|up-regulation of t-circle formation nc 2015-07-03T15:15:58Z biological_process owl:Class GO:0010480 biolink:NamedThing microsporocyte differentiation The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. tmpzr1t_l9r_go_relaxed.owl pollen mother cell differentiation biological_process owl:Class GO:2000613 biolink:NamedThing negative regulation of thyroid-stimulating hormone secretion Any process that stops, prevents or reduces the frequency, rate or extent of thyroid-stimulating hormone secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of thyroid stimulating hormone secretion|negative regulation of TSH secretion yaf 2011-04-18T12:56:20Z biological_process owl:Class GO:0036222 biolink:NamedThing XTP diphosphatase activity Catalysis of the reaction: XTP + H2O <=> H+ + XDP + monophosphate. tmpzr1t_l9r_go_relaxed.owl hypoxanthine/xanthine dNTP pyrophosphatase|XTPase activity|XTP/dITP diphosphatase|XTP pyrophosphohydrolase activity https://github.com/geneontology/go-ontology/issues/19078 EC:3.6.1.66|Reactome:R-HSA-2509831|KEGG_REACTION:R02720|MetaCyc:RXN0-5074|RHEA:28610|MetaCyc:RXN0-1603 While XTP is not produced by cells, deamination of purine bases can result in accumulation of such nucleotides as ITP, dITP, XTP, and dXTP. XTPase contributes to the removal of these abnormal bases from the cellular pool of nucleotide triphosphates. bf 2012-05-08T01:47:59Z GO:0103024 molecular_function owl:Class GO:1990080 biolink:NamedThing 2-phenylethylamine receptor activity Combining with the biogenic amine 2-phenylethylamine to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl beta-phenylethylamine receptor activity sp 2013-04-30T10:53:19Z molecular_function owl:Class GO:0007361 biolink:NamedThing establishment of posterior gap gene boundaries Specification of the borders of posterior gap gene expression mediated largely by the effects of other gap genes; in insects this is exemplified by hunchback and tailless repression of knirps. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007356 biolink:NamedThing thorax and anterior abdomen determination Specification of the central (trunk) regions of the embryo by the gap genes; exemplified in insects by the actions of the Kruppel gene product. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048733 biolink:NamedThing sebaceous gland development The process whose specific outcome is the progression of the sebaceous gland over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010939 biolink:NamedThing regulation of necrotic cell death Any process that modulates the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071349 biolink:NamedThing cellular response to interleukin-12 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-12 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-12 mah 2009-12-11T02:49:40Z biological_process owl:Class GO:0031838 biolink:NamedThing haptoglobin-hemoglobin complex A protein complex formed by the stable binding of a haptoglobin to hemoglobin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000379 biolink:NamedThing positive regulation of reactive oxygen species metabolic process Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of ROS metabolic process|positive regulation of reactive oxygen species metabolism mah 2011-02-11T02:06:57Z biological_process owl:Class GO:0034988 biolink:NamedThing Fc-gamma receptor I complex binding Binding to one or more specific sites on the Fc-gamma receptor I complex. The complex functions primarily as an activating receptor for IgG. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043425 biolink:NamedThing bHLH transcription factor binding Binding to a basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transcriptional networks of many developmental pathways. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140297 biolink:NamedThing DNA-binding transcription factor binding Binding to a DNA-binding transcription factor, a protein that interacts with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. tmpzr1t_l9r_go_relaxed.owl activating transcription factor binding|transcription activator binding|repressing transcription factor binding https://github.com/geneontology/go-ontology/issues/19354 pg 2018-11-28T12:48:20Z GO:0070491|GO:0033613|GO:0001107 molecular_function owl:Class GO:0120180 biolink:NamedThing cell-substrate junction disassembly The disaggregation of a cell-substrate junction into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T17:33:35Z biological_process owl:Class GO:0150115 biolink:NamedThing cell-substrate junction organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-substrate junction. A cell-substrate junction is a specialized region of connection between a cell and the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl bc 2019-11-14T11:06:29Z biological_process owl:Class GO:1900023 biolink:NamedThing positive regulation of D-erythro-sphingosine kinase activity Any process that activates or increases the frequency, rate or extent of D-erythro-sphingosine kinase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of sphingosine kinase activity|positive regulation of sphingosine kinase activity|up regulation of D-erythro-sphingosine kinase activity bf 2012-01-11T04:30:33Z biological_process owl:Class GO:1900022 biolink:NamedThing regulation of D-erythro-sphingosine kinase activity Any process that modulates the frequency, rate or extent of D-erythro-sphingosine kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of sphingosine kinase activity bf 2012-01-11T04:30:29Z biological_process owl:Class GO:0015611 biolink:NamedThing ABC-type D-ribose transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-ribose(out) -> ADP + phosphate + D-ribose(in). tmpzr1t_l9r_go_relaxed.owl D-ribose-importing ATPase activity|D-ribose porter activity MetaCyc:ABC-28-RXN|RHEA:29903|EC:7.5.2.8 molecular_function owl:Class GO:0046000 biolink:NamedThing positive regulation of ecdysteroid secretion Any process that activates or increases the frequency, rate or extent of the regulated release of ecdysteroid. tmpzr1t_l9r_go_relaxed.owl activation of ecdysteroid secretion|stimulation of ecdysteroid secretion|upregulation of ecdysteroid secretion|up regulation of ecdysteroid secretion|up-regulation of ecdysteroid secretion biological_process owl:Class GO:0071513 biolink:NamedThing phosphopantothenoylcysteine decarboxylase complex A protein complex that catalyzes decarboxylation of 4'-phosphopantothenoylcysteine to yield 4'-phosphopantetheine; this is the third step in the biosynthesis of Coenzyme A. The complex is homotrimeric in many eukaryotes, but is a heterotrimer in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'acetolactate synthase activity ; GO:0003984'. mah 2010-01-05T05:23:13Z cellular_component owl:Class GO:0016577 biolink:NamedThing histone demethylation The modification of histones by removal of methyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006482 biolink:NamedThing protein demethylation The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid demethylation biological_process owl:Class GO:1990799 biolink:NamedThing mitochondrial tRNA wobble position uridine thiolation The process in which a uridine residue at position 34 in the anticodon of a mitochondrial tRNA is post-transcriptionally thiolated at the C2 position. This process involves transfer of a sulfur from cysteine to position C2 by several steps. tmpzr1t_l9r_go_relaxed.owl vw 2015-07-13T08:15:15Z biological_process owl:Class GO:0070899 biolink:NamedThing mitochondrial tRNA wobble uridine modification The process in which a uridine in position 34 of a mitochondrial tRNA is post-transcriptionally modified. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-02T03:14:13Z biological_process owl:Class GO:0071505 biolink:NamedThing response to mycophenolic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycophenolic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to mycophenolate mah 2009-12-18T03:46:00Z biological_process owl:Class GO:0019529 biolink:NamedThing taurine catabolic process The chemical reactions and pathways resulting in the breakdown of taurine (2-aminoethanesulfonic acid), a sulphur-containing amino acid derivative important in the metabolism of fats. tmpzr1t_l9r_go_relaxed.owl taurine breakdown|taurine catabolism|taurine degradation MetaCyc:TAURINEDEG-PWY biological_process owl:Class GO:0032961 biolink:NamedThing negative regulation of inositol trisphosphate biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate. tmpzr1t_l9r_go_relaxed.owl negative regulation of myo-inositol trisphosphate biosynthesis|negative regulation of myo-inositol trisphosphate biosynthetic process|negative regulation of IP3 biosynthetic process|negative regulation of inositol trisphosphate biosynthesis|negative regulation of IP3 biosynthesis|negative regulation of inositol trisphosphate formation|negative regulation of inositol trisphosphate anabolism|negative regulation of inositol trisphosphate synthesis biological_process owl:Class GO:0042350 biolink:NamedThing GDP-L-fucose biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-L-fucose formation|GDP-L-fucose biosynthesis|GDP-L-fucose anabolism|GDP-L-fucose synthesis biological_process owl:Class GO:0006663 biolink:NamedThing platelet activating factor biosynthetic process The chemical reactions and pathways resulting in the formation of platelet activating factor, 1-O-alkyl-2-acetyl-sn-glycerol 3-phosphocholine, where alkyl = hexadecyl or octadecyl. Platelet activating factor is an inflammatory mediator released from a variety of cells in response to various stimuli. tmpzr1t_l9r_go_relaxed.owl PAF biosynthesis|PAF biosynthetic process|platelet activating factor synthesis|platelet activating factor biosynthesis|platelet activating factor formation|platelet activating factor anabolism biological_process owl:Class GO:0008611 biolink:NamedThing ether lipid biosynthetic process The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol. tmpzr1t_l9r_go_relaxed.owl ether lipid biosynthesis|ether lipid formation|ether lipid anabolism|ether lipid synthesis|plasmalogen biosynthetic process biological_process owl:Class GO:0051677 biolink:NamedThing pullulan biosynthetic process The chemical reactions and pathways resulting in the formation of pullulan, a neutral linear polysaccharide composed of repeating units of maltotriose joined by alpha-(1,6)-linkages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051141 biolink:NamedThing negative regulation of NK T cell proliferation Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer T cell proliferation. tmpzr1t_l9r_go_relaxed.owl negative regulation of natural killer T cell proliferation|downregulation of NK T cell proliferation|down regulation of NK T cell proliferation|negative regulation of NKT cell proliferation|inhibition of NK T cell proliferation|negative regulation of NK T-lymphocyte proliferation|negative regulation of NK T-cell proliferation|negative regulation of natural T cell proliferation|down-regulation of NK T cell proliferation|negative regulation of NK T lymphocyte proliferation|negative regulation of NT cell proliferation biological_process owl:Class GO:0090735 biolink:NamedThing DNA repair complex assembly The aggregation, arrangement and bonding together of a set of components to form a DNA repair complex. tmpzr1t_l9r_go_relaxed.owl tb 2017-02-06T16:42:27Z biological_process owl:Class GO:0042056 biolink:NamedThing chemoattractant activity Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal. tmpzr1t_l9r_go_relaxed.owl attractant molecular_function owl:Class GO:1901326 biolink:NamedThing response to tetracycline Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetracycline stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-30T10:13:26Z biological_process owl:Class GO:0000050 biolink:NamedThing urea cycle The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl ornithine cycle|urea biosynthetic process|urea biosynthesis Wikipedia:Urea_cycle GO:0006871|GO:0006594 biological_process owl:Class GO:0051324 biolink:NamedThing prophase The cell cycle phase which is the first stage of M phase of meiosis and mitosis and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Prophase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1903491 biolink:NamedThing response to simvastatin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a simvastatin stimulus. Simvastatin is a statin used as a cholesterol-lowering and anti-cardiovascular disease drug. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. hp 2014-09-25T10:58:06Z biological_process owl:Class GO:0036273 biolink:NamedThing response to statin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a statin stimulus. Statins are organooxygen compounds whose structure is related to compactin (mevastatin) and which may be used as an anticholesteremic drug due its EC:1.1.1.34/EC:1.1.1.88 (hydroxymethylglutaryl-CoA reductase) inhibitory properties. tmpzr1t_l9r_go_relaxed.owl response to hydroxymethylglutaryl-CoA reductase inhibitor|response to HMG-CoA reductase inhibitor Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T01:54:01Z biological_process owl:Class GO:0031137 biolink:NamedThing regulation of conjugation with cellular fusion Any process that modulates the rate or frequency of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990356 biolink:NamedThing sumoylated E2 ligase complex A protein complex consisting of a SUMO (small ubiquitin-related modifier) protein bound to a SUMO-conjugating E2 ligase. Sumoylation of the E2 ligase is an intermediate step required for the formation of covalent bonds between a SUMO protein and its ultimate protein target. SUMO is transferred to the E2 ligase by a SUMO-activating E1 enzyme. Sumoylation of the target protein is either facilitated directly by the sumoylated E2 ligase or aided by an optional E3 ligase. tmpzr1t_l9r_go_relaxed.owl An example of this is UBC9 in human (UniProt symbol P63279) in PMID:18691969 (inferred from direct assay). bhm 2014-04-02T14:06:56Z cellular_component owl:Class GO:0102212 biolink:NamedThing unsaturated chondroitin disaccharide hydrolase activity Catalysis of the reaction: beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-beta-D-GalpNAc6S + H2O = 5-dehydro-4-deoxy-D-glucuronate + N-acetyl-beta-D-galactosamine 6-sulfate. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.180|MetaCyc:RXN-12177|RHEA:31647 molecular_function owl:Class GO:0031264 biolink:NamedThing death-inducing signaling complex A protein complex formed by the association of signaling proteins with a death receptor upon ligand binding. The complex includes procaspases and death domain-containing proteins in addition to the ligand-bound receptor, and may control the activation of caspases 8 and 10. tmpzr1t_l9r_go_relaxed.owl death receptor-induced signalling complex|DISC|death-inducing signalling complex|DISC protein complex|death receptor-induced signaling complex Wikipedia:Death-inducing_signaling_complex Gene products that may be annotated to this term include: 1) ligand-bound receptors such as FAS/CD95 (though care should be taken because FAS can also act as a non-apoptotic signal transducer); 2) signaling molecules such as FADD (FAS-associated protein with a death domain), cIAPs (cellular inhibitor of apoptosis proteins), c-FLIPs and caspases 8 and 10. cellular_component owl:Class GO:0044548 biolink:NamedThing S100 protein binding Binding to a S100 protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS. tmpzr1t_l9r_go_relaxed.owl S100 beta binding|S100 alpha binding|S100 binding jl 2012-03-22T03:23:51Z GO:0048155|GO:0048154 molecular_function owl:Class GO:0060705 biolink:NamedThing neuron differentiation involved in salivary gland development The process in which a relatively unspecialized cell acquires specialized structural and/or functional features that characterize the neurons of the salivary gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T09:35:52Z biological_process owl:Class GO:0043984 biolink:NamedThing histone H4-K16 acetylation The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 16 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 acetylation at K16 biological_process owl:Class GO:0055060 biolink:NamedThing asymmetric neuroblast division resulting in ganglion mother cell formation Any process resulting in the physical partitioning and separation of a neuroblast into a neuroblast and a ganglion mother cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055059 biolink:NamedThing asymmetric neuroblast division The process resulting in the physical partitioning and separation of a neuroblast into two daughter cells with different developmental potentials. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071101 biolink:NamedThing alpha4-beta1 integrin-JAM2 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell adhesion molecule JAM2. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-JAM2 complex mah 2009-11-06T04:52:59Z cellular_component owl:Class GO:1902340 biolink:NamedThing negative regulation of chromosome condensation Any process that stops, prevents or reduces the frequency, rate or extent of chromosome condensation. tmpzr1t_l9r_go_relaxed.owl negative regulation of nuclear chromosome condensation|downregulation of chromosome condensation|inhibition of eukaryotic chromosome condensation|down-regulation of eukaryotic chromosome condensation|down-regulation of nuclear chromosome condensation|inhibition of chromosome condensation|downregulation of nuclear chromosome condensation|down regulation of chromosome condensation|downregulation of eukaryotic chromosome condensation|down regulation of eukaryotic chromosome condensation|negative regulation of eukaryotic chromosome condensation|down-regulation of chromosome condensation|inhibition of nuclear chromosome condensation|down regulation of nuclear chromosome condensation dgf 2013-07-29T20:54:14Z biological_process owl:Class GO:0032448 biolink:NamedThing DNA hairpin binding Binding to a DNA region containing a hairpin. A hairpin structure forms when a DNA strand folds back on itself and intrachain base pairing occurs between inverted repeat sequences. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901872 biolink:NamedThing ecgonone methyl ester biosynthetic process The chemical reactions and pathways resulting in the formation of ecgonone methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonone methyl ester formation|ecgonone methyl ester biosynthesis|ecgonone methyl ester synthesis|ecgonone methyl ester anabolism ms 2013-02-04T11:58:39Z biological_process owl:Class GO:0036385 biolink:NamedThing nucleoid DNA packaging Any process in which DNA and associated proteins are formed into a compact, orderly structure within a nucleoid. tmpzr1t_l9r_go_relaxed.owl bf 2013-05-30T10:36:05Z biological_process owl:Class GO:0002141 biolink:NamedThing stereocilia ankle link A stereocilia coupling link that is composed of a fine filament present in developing stereocilia that couples the bases of individual stereocilia to one another. They are not present in mature stereocilia. tmpzr1t_l9r_go_relaxed.owl hjd 2009-05-06T10:31:56Z cellular_component owl:Class GO:0004858 biolink:NamedThing dUTP pyrophosphatase inhibitor activity Binds to and stops, prevents or reduces the activity of dUTP pyrophosphatase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097352 biolink:NamedThing autophagosome maturation Removal of PI3P and Atg8/LC3 after the closure of the phagophore and before the fusion with the endosome/lysosome (e.g. mammals and insects) or vacuole (yeast), and that very likely destabilizes other Atg proteins and thus enables their efficient dissociation and recycling. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole fusion|autophagic vacuole maturation|autophagosome fusion pr 2012-06-28T03:12:18Z GO:0000046 biological_process owl:Class GO:1905778 biolink:NamedThing negative regulation of exonuclease activity Any process that stops, prevents or reduces the frequency, rate or extent of exonuclease activity. tmpzr1t_l9r_go_relaxed.owl down regulation of exonuclease IX activity|downregulation of exonuclease activity|inhibition of exonuclease IX activity|down regulation of exonuclease activity|inhibition of exonuclease activity|down-regulation of exonuclease IX activity|down-regulation of exonuclease activity|downregulation of exonuclease IX activity|negative regulation of exonuclease IX activity nc 2016-12-21T21:32:16Z biological_process owl:Class GO:0033967 biolink:NamedThing box C/D RNA metabolic process The chemical reactions and pathways involving box C/D type small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl box C/D sRNA metabolic process|box C/D snoRNA metabolic process https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0031092 biolink:NamedThing platelet alpha granule membrane The lipid bilayer surrounding the platelet alpha granule. tmpzr1t_l9r_go_relaxed.owl platelet alpha-granule membrane cellular_component owl:Class GO:0032771 biolink:NamedThing regulation of tyrosinase activity Any process that modulates the activity of a tyrosinase enzyme. tmpzr1t_l9r_go_relaxed.owl regulation of monophenol monooxygenase activity|regulation of monophenol oxygenase activity https://github.com/geneontology/go-ontology/issues/21024 biological_process owl:Class GO:0060301 biolink:NamedThing positive regulation of cytokine activity Any process that increases the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032028 biolink:NamedThing myosin head/neck binding Binding to the head/neck region of a myosin heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007634 biolink:NamedThing optokinetic behavior The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus. tmpzr1t_l9r_go_relaxed.owl optokinetic behaviour biological_process owl:Class GO:0007632 biolink:NamedThing visual behavior The behavior of an organism in response to a visual stimulus. tmpzr1t_l9r_go_relaxed.owl visual behaviour|behavioural response to visual stimulus|behavioral response to visual stimulus biological_process owl:Class GO:0102739 biolink:NamedThing (gibberellin-36), 2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A36 + O2 + 2-oxoglutarate <=> H+ + gibberellin A4 + succinate + 2 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7591 molecular_function owl:Class GO:0099038 biolink:NamedThing ceramide floppase activity Catalysis of the movement of ceramide from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ceramide floppase activity (cytosolic to exoplasmic leaftlet)|ATP-dependent ceramide transporter activity|ceramide-translocating ATPase activity|ATPase-coupled ceramide transporter activity molecular_function owl:Class GO:0003296 biolink:NamedThing apoptotic process involved in atrial ventricular junction remodeling Any apoptotic process that contributes to the reorganization of tissue resulting in the maturation of the atrial ventricular junction. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in atrial ventricular junction remodeling|apoptosis involved in atrio-ventricular junction remodeling|apoptosis involved in atrioventricular junction remodeling dph 2009-10-22T08:43:11Z biological_process owl:Class GO:0018648 biolink:NamedThing methanesulfonate monooxygenase activity Catalysis of the reaction: methanesulfonate + NADH + H+ + O2 = formaldehyde + NAD+ + sulfite + H2O. tmpzr1t_l9r_go_relaxed.owl methanesulfonate,FMNH2:oxygen oxidoreductase activity|methanesulfonic acid monooxygenase activity|MSAMO activity|methanesulphonic acid monooxygenase activity|methanesulfonate,NADH:oxygen oxidoreductase activity|MSA monooxygenase activity|mesylate monooxygenase activity MetaCyc:RXN-9770|RHEA:26077|EC:1.14.13.111 molecular_function owl:Class GO:1904408 biolink:NamedThing melatonin binding Binding to melatonin. tmpzr1t_l9r_go_relaxed.owl mr 2015-06-25T19:19:53Z molecular_function owl:Class GO:0019907 biolink:NamedThing cyclin-dependent protein kinase activating kinase holoenzyme complex A cyclin-dependent kinase activating kinase complex capable of activating cyclin-dependent kinases by threonine phosphorylation, thus regulating cell cycle progression. consists of a kinase, cyclin and optional assembly factors, in human CDK7, CCNH and MNAT1. CAK activity is itself regulated throughout the cell cycle by T-loop phosphorylation of its kinase component (CDK7 in human). Phosphorylation of serine residues during mitosis inactivates the enzyme. Also capable of CAK phosphorylating the carboxyl-terminal domain (CTD) of RNA polymerase II and other transcription activating proteins, as part of the general transcription factor TFIIH. tmpzr1t_l9r_go_relaxed.owl CDK-activating kinase complex|CAK complex cellular_component owl:Class GO:0002563 biolink:NamedThing somatic diversification of immune receptors via alternate splicing The process in which immune receptor genes are diversified through alternate splicing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008177 biolink:NamedThing succinate dehydrogenase (ubiquinone) activity Catalysis of the reaction: succinate + ubiquinone = fumarate + ubiquinol. tmpzr1t_l9r_go_relaxed.owl quinol:fumarate oxidoreductase activity|fumarate reductase complex (i.e. FRD, involved in anaerobic respiration, repressed in aerobic respiration)|succinate:ubiquinone oxidoreductase activity|succinate dehydrogenase complex (i. e. SDH, involved in aerobic respiration, repressed in anaerobic respiration)|respiratory complex II|menaquinol: fumarate oxidoreductase activity|succinic dehydrogenase activity Reactome:R-HSA-70994|Reactome:R-HSA-163213|MetaCyc:SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN|RHEA:13713|EC:1.3.5.1|KEGG_REACTION:R02164 GO:0019737 molecular_function owl:Class GO:0047696 biolink:NamedThing beta-adrenergic receptor kinase activity Catalysis of the reaction: ATP + beta-adrenergic receptor = ADP + phospho-beta-adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl beta-adrenergic receptor-specific kinase activity|[b-adrenergic-receptor] kinase activity|beta-ARK 2|ATP:beta-adrenergic-receptor phosphotransferase activity|beta-adrenergic-receptor kinase (phosphorylating) activity|beta-AR kinase activity|betaARK1|STK15|beta-receptor kinase activity|beta2ARK|beta-ARK 1|beta-adrenoceptor kinase 1 activity|BARK1|ADRBK1|beta-adrenergic-receptor kinase activity|adrenergic receptor kinase activity|GRK3|GRK2|beta-ARK|beta-adrenoceptor kinase 2 activity|beta-adrenoceptor kinase activity EC:2.7.11.15|Reactome:R-HSA-8851797|RHEA:19429|Reactome:R-HSA-8866268 molecular_function owl:Class GO:0004828 biolink:NamedThing serine-tRNA ligase activity Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). tmpzr1t_l9r_go_relaxed.owl seryl-transfer ribonucleic acid synthetase activity|seryl-transfer RNA synthetase activity|L-serine:tRNASer ligase (AMP-forming)|seryl-tRNA synthetase activity|SerRS activity|serine translase activity|seryl-transfer ribonucleate synthetase activity Reactome:R-HSA-380239|RHEA:12292|Reactome:R-HSA-379992|MetaCyc:SERINE--TRNA-LIGASE-RXN|EC:6.1.1.11 molecular_function owl:Class GO:0160001 biolink:NamedThing extrasynaptic signaling via GABA Cell-cell signaling that starts with the activation of extrasynaptic GABA receptors in neurons through binding of ambient gamma-aminobutyric acid present in the extracellular fluid. tmpzr1t_l9r_go_relaxed.owl rl 2021-02-26T23:08:15Z biological_process owl:Class GO:1904590 biolink:NamedThing negative regulation of protein import Any process that stops, prevents or reduces the frequency, rate or extent of protein import. tmpzr1t_l9r_go_relaxed.owl down regulation of protein uptake|inhibition of protein import|inhibition of protein uptake|downregulation of protein uptake|negative regulation of protein uptake|down regulation of protein import|downregulation of protein import|down-regulation of protein import|down-regulation of protein uptake sl 2015-08-20T21:26:36Z biological_process owl:Class GO:0052085 biolink:NamedThing suppression by symbiont of host T-cell mediated immune response Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of the T-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of T-cell mediated immune response of other organism involved in symbiotic interaction|inhibition by symbiont of host T-cell mediated immune response|negative regulation by symbiont of host T-cell mediated immune response|down regulation by symbiont of host T-cell mediated immune response|down-regulation by symbiont of host T-cell mediated immune response|downregulation by symbiont of host T-cell mediated immune response GO:0052280 biological_process owl:Class GO:0007317 biolink:NamedThing regulation of pole plasm oskar mRNA localization Any process that modulates the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm. tmpzr1t_l9r_go_relaxed.owl regulation of pole plasm oskar mRNA localisation|regulation of oocyte pole plasm oskar mRNA localization biological_process owl:Class GO:0106107 biolink:NamedThing regulation of (R)-mevalonic acid biosynthetic process Any process that modulates the frequency, rate or extent of (R)-mevalonic acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-03-27T14:08:59Z biological_process owl:Class GO:0070357 biolink:NamedThing alphav-beta3 integrin-CD47 complex A protein complex that consists of an alphav-beta3 integrin complex bound to CD47 (also known as IAP). tmpzr1t_l9r_go_relaxed.owl ITGB3-ITGAV-CD47 complex cellular_component owl:Class GO:0034879 biolink:NamedThing 2,3,6-trihydroxyisonicotinate decarboxylase activity Catalysis of the reaction: 2,3,6-trihydroxyisonicotinate = 2,3,6-trihydroxypyridine + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1340 molecular_function owl:Class GO:0045982 biolink:NamedThing negative regulation of purine nucleobase metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving purine nucleobases. tmpzr1t_l9r_go_relaxed.owl downregulation of purine base metabolic process|negative regulation of purine base metabolic process|down-regulation of purine base metabolic process|negative regulation of purine base metabolism|inhibition of purine base metabolic process|down regulation of purine base metabolic process biological_process owl:Class GO:0050910 biolink:NamedThing detection of mechanical stimulus involved in sensory perception of sound The series of events involved in the perception of sound vibration in which the vibration is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of sound, sensory transduction of mechanical stimulus|perception of sound, detection of mechanical stimulus|sensory transduction of mechanical stimulus during perception of sound|sensory transduction of sound|perception of sound, sensory detection of mechanical stimulus|hearing, sensory transduction of sound|sensory detection of mechanical stimulus during perception of sound|detection of sound GO:0009592|GO:0055128 biological_process owl:Class GO:0080159 biolink:NamedThing zygote elongation The process in which the zygote irreversibly increases in size in one dimension after fertilization. An example of such a process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-01T04:07:51Z biological_process owl:Class GO:0061822 biolink:NamedThing ciliary cap An intracellular compartmentalized cilium structure found in insect spermatids which is bounded by a membrane derived from the invagination of the cell membrane that remains associated with the primary cilium as it is internalized. The ciliary cap is maintained at the end of the axoneme distal to the centriole and is separated from the cytosolic axoneme/cytoplasm by a putative transition zone, which may extend into the ciliary cap, and include a structure at the base of the ciliary cap termed the ring centriole. tmpzr1t_l9r_go_relaxed.owl spermatid ciliary cap dph 2017-01-14T14:14:11Z cellular_component owl:Class GO:0075110 biolink:NamedThing induction by symbiont of host receptor-mediated signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host receptor-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by host of symbiont receptor-mediated signal transduction ; GO:0075079". biological_process owl:Class GO:0046214 biolink:NamedThing enterobactin catabolic process The chemical reactions and pathways resulting in the breakdown of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. tmpzr1t_l9r_go_relaxed.owl enterobactin catabolism|enterobactin breakdown|enterobactin degradation biological_process owl:Class GO:0031979 biolink:NamedThing plasma membrane-derived thylakoid lumen The volume enclosed by a plasma membrane-derived thylakoid. tmpzr1t_l9r_go_relaxed.owl plasma membrane thylakoid lumen cellular_component owl:Class GO:1902780 biolink:NamedThing response to nonane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T03:24:50Z biological_process owl:Class GO:0043503 biolink:NamedThing skeletal muscle fiber adaptation Any process in which the skeletal muscle fibers change their phenotypic profiles in response to altered functional demands and a variety of signals. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast. tmpzr1t_l9r_go_relaxed.owl skeletal myofiber plasticity|skeletal muscle fiber plasticity|skeletal muscle fibre plasticity|skeletal myofibre plasticity biological_process owl:Class GO:0008138 biolink:NamedThing protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl dual-specificity protein phosphatase https://github.com/geneontology/go-ontology/issues/12183 Reactome:R-HSA-9652816|Reactome:R-HSA-5675373|Reactome:R-HSA-5675376 Note that this term applies only to free amino acids. Consider 'protein serine/threonine phosphatase activity' or 'protein tyrosine/serine/threonine phosphatase activity' if you want to annotate a protein phosphatase. molecular_function owl:Class GO:2000047 biolink:NamedThing regulation of cell-cell adhesion mediated by cadherin Any process that modulates the frequency, rate or extent of cell-cell adhesion mediated by cadherin. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T12:56:44Z biological_process owl:Class GO:0030770 biolink:NamedThing demethylmacrocin O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + demethylmacrocin = S-adenosyl-L-homocysteine + H(+) + macrocin. tmpzr1t_l9r_go_relaxed.owl demethylmacrocin methyltransferase activity|S-adenosyl-L-methionine:demethylmacrocin 2'''-O-methyltransferase activity EC:2.1.1.102|RHEA:17573|KEGG_REACTION:R02859|MetaCyc:DEMETHYLMACROCIN-O-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0036321 biolink:NamedThing ghrelin secretion The regulated release of ghrelin from a cell. Ghrelin is a 28 amino acid hunger-stimulating peptide hormone. tmpzr1t_l9r_go_relaxed.owl pancreatic ghrelin secretion bf 2012-09-04T14:16:43Z biological_process owl:Class GO:0071458 biolink:NamedThing integral component of cytoplasmic side of endoplasmic reticulum membrane The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the cytoplasmic side of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to cytosolic side of endoplasmic reticulum membrane|integral to cytosolic leaflet of endoplasmic reticulum membrane|integral to ER membrane, cytosolic side|integral to cytosolic side of ER membrane mah 2009-12-17T01:43:33Z cellular_component owl:Class GO:0120206 biolink:NamedThing photoreceptor distal connecting cilium The distal region of the photoreceptor connecting cilium is structurally unique to the photoreceptor and is maintained by retina-specific protein, SPATA7, and its interacting partners RPGR and RPGRIP1. It is essential for photoreceptor sensory cilium stability. tmpzr1t_l9r_go_relaxed.owl photoreceptor DCC|DCC krc 2019-05-10T22:54:05Z cellular_component owl:Class GO:0097747 biolink:NamedThing RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. tmpzr1t_l9r_go_relaxed.owl pr 2016-12-02T11:48:55Z molecular_function owl:Class GO:0090217 biolink:NamedThing negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity Any process that decreases the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-12T10:00:45Z biological_process owl:Class GO:0036435 biolink:NamedThing K48-linked polyubiquitin modification-dependent protein binding Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 48 in the target protein. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5683077 bf 2013-09-18T14:51:06Z molecular_function owl:Class GO:0051448 biolink:NamedThing gonadotropin-releasing hormone binding Binding to gonadotropin-releasing hormone (GnRH), a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl gonadotrophin releasing hormone binding|GnRH binding molecular_function owl:Class GO:0150118 biolink:NamedThing negative regulation of cell-substrate junction organization Any process that stops, prevents or reduces the frequency, rate or extent of cell-substrate junction organization. tmpzr1t_l9r_go_relaxed.owl bc 2019-11-14T12:16:32Z biological_process owl:Class GO:0031818 biolink:NamedThing P2Y9 nucleotide receptor binding Binding to a P2Y9 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y9 nucleotide receptor ligand molecular_function owl:Class GO:0050456 biolink:NamedThing cystine reductase activity Catalysis of the reaction: 2 L-cysteine + NAD(+) = L-cystine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cystine reductase (NADH2)|NADH-dependent cystine reductase activity|cystine reductase (NADH) activity|NADH2:L-cystine oxidoreductase|NADH:L-cystine oxidoreductase activity|L-cysteine:NAD+ oxidoreductase RHEA:20597|KEGG_REACTION:R00892|EC:1.8.1.6|MetaCyc:CYSTINE-REDUCTASE-NADH-RXN molecular_function owl:Class GO:0045225 biolink:NamedThing negative regulation of CD4 production Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of CD4. tmpzr1t_l9r_go_relaxed.owl down regulation of CD4 biosynthetic process|down-regulation of CD4 biosynthetic process|negative regulation of CD4 formation|negative regulation of CD4 anabolism|inhibition of CD4 biosynthetic process|negative regulation of CD4 synthesis|negative regulation of CD4 biosynthesis|negative regulation of CD4 biosynthetic process|downregulation of CD4 biosynthetic process biological_process owl:Class GO:1903710 biolink:NamedThing spermine transmembrane transport The process in which spermine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-06T08:11:32Z biological_process owl:Class GO:0005278 biolink:NamedThing acetylcholine:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + acetylcholine(in) = H+(in) + acetylcholine(out). tmpzr1t_l9r_go_relaxed.owl acetylcholine:hydrogen antiporter activity molecular_function owl:Class GO:0018132 biolink:NamedThing peptide cross-linking via L-cysteine oxazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl cysteine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0238 biological_process owl:Class GO:1905811 biolink:NamedThing negative regulation of excitatory synapse pruning Any process that stops, prevents or reduces the frequency, rate or extent of excitatory synapse pruning. tmpzr1t_l9r_go_relaxed.owl regulation of synapse removal|regulation of synapse elimination|down regulation of excitatory synapse disassembly|regulation of synapse disassembly|inhibition of excitatory synapse disassembly|downregulation of excitatory synapse disassembly|regulation of synapse clearance|down-regulation of excitatory synapse disassembly tb 2017-01-12T02:38:36Z biological_process owl:Class GO:1905807 biolink:NamedThing negative regulation of synapse pruning Any process that stops, prevents or reduces the frequency, rate or extent of synapse pruning. tmpzr1t_l9r_go_relaxed.owl regulation of synapse clearance|down-regulation of synapse disassembly|regulation of synapse removal|inhibition of synapse disassembly|regulation of synapse elimination|regulation of synapse disassembly|down regulation of synapse disassembly|downregulation of synapse disassembly tb 2017-01-11T22:03:24Z biological_process owl:Class GO:0015576 biolink:NamedThing sorbitol transmembrane transporter activity Enables the transfer of sorbitol from one side of a membrane to the other. Sorbitol, also known as glucitol, is the hexitol derived by the reduction of the aldehyde group of glucose. tmpzr1t_l9r_go_relaxed.owl glucitol permease activity|glucitol transporter activity|sorbitol permease activity GO:0015587 molecular_function owl:Class GO:0003224 biolink:NamedThing left ventricular compact myocardium morphogenesis The process in which the anatomical structures of cardiac left ventricular compact myocardium are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T10:43:36Z biological_process owl:Class GO:0140291 biolink:NamedThing peptidyl-glutamate ADP-deribosylation The removal of ADP-ribose from ADP-ribosylglutamate. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T14:34:24Z biological_process owl:Class GO:0051725 biolink:NamedThing protein de-ADP-ribosylation The process of removing one or more ADP-ribose residues from a protein. tmpzr1t_l9r_go_relaxed.owl protein poly(ADP-ribose) catabolism|protein poly(ADP-ribose) degradation|removal of ADP-ribose from protein|protein poly(ADP-ribose) catabolic process|protein poly(ADP-ribose) hydrolysis|poly(ADP-ribose) removal from protein|protein amino acid de-ADP-ribosylation biological_process owl:Class GO:0033325 biolink:NamedThing choline biosynthetic process via phosphoryl-ethanolamine The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate phosphoryl-ethanolamine. tmpzr1t_l9r_go_relaxed.owl choline biosynthesis via phosphoryl-ethanolamine|choline synthesis via phosphoryl-ethanolamine|choline formation via phosphoryl-ethanolamine|choline anabolism via phosphoryl-ethanolamine MetaCyc:PWY-3385|MetaCyc:PWY-4762 biological_process owl:Class GO:0042425 biolink:NamedThing choline biosynthetic process The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl choline synthesis|choline biosynthesis|choline formation|choline anabolism MetaCyc:PWY-4762 biological_process owl:Class GO:0060580 biolink:NamedThing ventral spinal cord interneuron fate determination The process in which a cell becomes capable of differentiating autonomously into a ventral spinal cord interneuron regardless of its environment; upon determination, the cell fate cannot be reversed. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-07T12:24:50Z biological_process owl:Class GO:0048664 biolink:NamedThing neuron fate determination The process in which a cell becomes capable of differentiating autonomously into a neuron regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901456 biolink:NamedThing positive regulation of response to toluene Any process that activates or increases the frequency, rate or extent of response to toluene. tmpzr1t_l9r_go_relaxed.owl activation of response to toluene|up-regulation of response to toluene|up regulation of response to toluene|upregulation of response to toluene tt 2012-10-02T14:23:45Z biological_process owl:Class GO:0072346 biolink:NamedThing cADPR-sensitive calcium-release channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens when cyclic adenosine diphosphate ribose (cADPR) has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-10T01:10:51Z molecular_function owl:Class GO:0043258 biolink:NamedThing laminin-9 complex A laminin complex composed of alpha4, beta2 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-421 complex cellular_component owl:Class GO:0033410 biolink:NamedThing UAC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UAC codon. tmpzr1t_l9r_go_relaxed.owl tyrosine tRNA|TAC codon-amino acid adaptor activity Note that in the standard genetic code, TAC codes for tyrosine. molecular_function owl:Class GO:0031295 biolink:NamedThing T cell costimulation The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation. tmpzr1t_l9r_go_relaxed.owl T-cell co-stimulation|T cell co-stimulation|T-lymphocyte costimulation|T-cell costimulation|T lymphocyte costimulation biological_process owl:Class GO:0106042 biolink:NamedThing negative regulation of GABA-A receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of GABA-A receptor activity. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-27T18:55:03Z biological_process owl:Class GO:0050150 biolink:NamedThing o-pyrocatechuate decarboxylase activity Catalysis of the reaction: 2,3-dihydroxybenzoate + H(+) = catechol + CO(2). tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybenzoic acid decarboxylase activity|2,3-dihydroxybenzoate decarboxylase activity|2,3-dihydroxybenzoate carboxy-lyase (catechol-forming)|2,3-dihydroxybenzoate carboxy-lyase activity|2,3-DHBA decarboxylase activity RHEA:21492|MetaCyc:O-PYROCATECHUATE-DECARBOXYLASE-RXN|UM-BBD_reactionID:r0579|EC:4.1.1.46|KEGG_REACTION:R00821 GO:0018790 molecular_function owl:Class GO:0042270 biolink:NamedThing protection from natural killer cell mediated cytotoxicity The process of protecting a cell from natural killer cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl protection from NK cell mediated cell death|protection from natural killer cell mediated cell death|protection from natural killer cell mediated cell killing|protection from NK cell mediated cytotoxicity|protection from NK cell mediated cytolysis|protection from natural killer cell mediated cytolysis|protection from NK cell mediated cell killing biological_process owl:Class GO:1901837 biolink:NamedThing negative regulation of transcription of nucleolar large rRNA by RNA polymerase I Any process that stops, prevents or reduces the frequency, rate or extent of transcription of nuclear large rRNA transcript mediated by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|negative regulation of transcription of nuclear rRNA large Pol I transcript|inhibition of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|down-regulation of transcription of nuclear rRNA large Pol I transcript|downregulation of transcription of nuclear rRNA large Pol I transcript|down regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|inhibition of transcription of nuclear rRNA large Pol I transcript|down-regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter|down regulation of transcription of nuclear rRNA large Pol I transcript|negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter sart 2013-01-23T10:16:31Z biological_process owl:Class GO:0102284 biolink:NamedThing L-threo-sphinganine reductase activity Catalysis of the reaction: L-threo-sphinganine + NADP <=> H+ + NADPH + 3-dehydrosphinganinium(1+). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12645 molecular_function owl:Class GO:0021832 biolink:NamedThing cell-cell adhesion involved in cerebral cortex tangential migration using cell-cell interactions The attachment of cells to one another to form groups of cells involved in cerebral cortex tangential migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904767 biolink:NamedThing octanoic acid binding Binding to octanoic acid. tmpzr1t_l9r_go_relaxed.owl caprylic acid binding kmv 2015-10-27T21:11:49Z molecular_function owl:Class GO:0047593 biolink:NamedThing 6-acetylglucose deacetylase activity Catalysis of the reaction: 6-acetyl-D-glucose + H(2)O = D-glucose + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl 6-acetyl-D-glucose acetylhydrolase activity|6-O-acetylglucose deacetylase activity RHEA:18485|EC:3.1.1.33|KEGG_REACTION:R00327|MetaCyc:6-ACETYLGLUCOSE-DEACETYLASE-RXN molecular_function owl:Class GO:1905092 biolink:NamedThing response to diosgenin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diosgenin stimulus. tmpzr1t_l9r_go_relaxed.owl bc 2016-03-31T11:04:28Z biological_process owl:Class GO:0031104 biolink:NamedThing dendrite regeneration The regrowth of dendrites in response to their loss or damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904845 biolink:NamedThing cellular response to L-glutamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-glutamine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-12-07T19:39:24Z biological_process owl:Class GO:0008389 biolink:NamedThing coumarin 7-hydroxylase activity Catalysis of the reaction: coumarin + O2 + NADPH + H+ = hydroxycoumarin + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2A5 Reactome:R-HSA-76453|Reactome:R-HSA-211881 molecular_function owl:Class GO:0070048 biolink:NamedThing endobrevin-SNAP-25-syntaxin-1a complex A SNARE complex that contains endobrevin (VAMP8), SNAP-25, and syntaxin 1a (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Stx1a-Snap25-Vamp8 complex|SNARE complex (Stx1a, Snap25, Vamp8) cellular_component owl:Class GO:0061659 biolink:NamedThing ubiquitin-like protein ligase activity Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S --> X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl small conjugating protein ligase activity|E3 dph 2014-11-06T13:46:23Z molecular_function owl:Class GO:0015778 biolink:NamedThing hexuronide transport The directed movement of hexuronide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Hexuronides are any compound formed by combination of glycosidic linkage of a hydroxy compound (e.g. an alcohol or a saccharide) with the anomeric carbon atom of a hexuronate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102054 biolink:NamedThing maleylpyruvate hydrolase activity Catalysis of the reaction: 3-maleylpyruvate(2-) + H2O <=> H+ + maleate(2-) + pyruvate. tmpzr1t_l9r_go_relaxed.owl RHEA:47956|MetaCyc:RXN-10447|EC:3.7.1.23 molecular_function owl:Class GO:0086026 biolink:NamedThing atrial cardiac muscle cell to AV node cell signaling Any process that mediates the transfer of information from an atrial cardiomyocyte to an AV node cell. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte to atrioventricular node cell signaling|atrial cardiomyocyte to AV node cell signalling|atrial cardiomyocyte to AV node cell signaling tb 2011-11-11T02:02:14Z biological_process owl:Class GO:0098634 biolink:NamedThing cell-matrix adhesion mediator activity The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl cell-matrix adhesion molecule|protein binding involved in cell-matrix adhesion molecular_function owl:Class GO:0002512 biolink:NamedThing central T cell tolerance induction Tolerance induction of T cells in the thymus. tmpzr1t_l9r_go_relaxed.owl central T-lymphocyte tolerance induction|central T-cell tolerance induction|central T lymphocyte tolerance induction biological_process owl:Class GO:0090640 biolink:NamedThing phosphatidylcholine biosynthesis from sn-glycero-3-phosphocholine The phosphatidylcholine biosynthetic process that involves the two-step acylation of sn-glycero-3-phosphocholine to a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-23T15:56:12Z biological_process owl:Class GO:0050969 biolink:NamedThing detection of chemical stimulus involved in magnetoreception The series of events involved in magnetoception in which a chemical stimulus is received and converted into a molecular signal. It is believed that organisms such as birds and salamanders interpret product ratios in chemical reactions which involve transitions between different spin states. tmpzr1t_l9r_go_relaxed.owl magnetoreception, sensory transduction of chemical stimulus|magnetoreception, detection of chemical stimulus|sensory detection of chemical stimulus during magnetoreception|magnetoreception, sensory detection of chemical stimulus|magnetoception, sensory transduction of chemical stimulus|sensory transduction of chemical stimulus during magnetoreception biological_process owl:Class GO:0007014 biolink:NamedThing actin ubiquitination The modification of actin by addition of ubiquitin groups. tmpzr1t_l9r_go_relaxed.owl indirect flight muscle actin ubiquitination biological_process owl:Class GO:0015903 biolink:NamedThing fluconazole transport The directed movement of fluconazole into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fluconazole is an antifungal drug used for oral candidiasis and cryptococcal meningitis; it is still under study for treatment of vaginal candidiasis and other fungal infections. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021703 biolink:NamedThing locus ceruleus development The process whose specific outcome is the progression of the locus ceruleus over time, from its formation to the mature structure. The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic. tmpzr1t_l9r_go_relaxed.owl locus coeruleus development|locus caeruleus development biological_process owl:Class GO:0072562 biolink:NamedThing blood microparticle A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids. tmpzr1t_l9r_go_relaxed.owl cell membrane microparticle mah 2011-01-28T11:50:56Z cellular_component owl:Class GO:1902507 biolink:NamedThing thiazole synthase complex A protein complex which is capable of thiazole synthase activity. tmpzr1t_l9r_go_relaxed.owl bhm 2013-11-14T16:19:28Z cellular_component owl:Class GO:0045965 biolink:NamedThing negative regulation of ecdysteroid metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids. tmpzr1t_l9r_go_relaxed.owl down regulation of ecdysteroid metabolic process|negative regulation of ecdysteroid metabolism|down-regulation of ecdysteroid metabolic process|downregulation of ecdysteroid metabolic process|inhibition of ecdysteroid metabolic process biological_process owl:Class GO:0019704 biolink:NamedThing peptidyl-L-cysteine S-myristoylation The modification of peptidyl-cysteine to form peptidyl-S-myristoyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-myristoyl-L-cysteine synthesis from peptidyl-cysteine|peptidyl-S-myristoyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-myristoyl-L-cysteine anabolism from peptidyl-cysteine|peptidyl-S-myristoyl-L-cysteine biosynthetic process from peptidyl-cysteine RESID:AA0307 biological_process owl:Class GO:0050140 biolink:NamedThing nitrate reductase (cytochrome) activity Catalysis of the reaction: ferrocytochrome + nitrate = ferricytochrome + nitrite. tmpzr1t_l9r_go_relaxed.owl benzyl viologen-nitrate reductase activity|ferrocytochrome:nitrate oxidoreductase activity RHEA:12909|MetaCyc:NITRATE-REDUCTASE-CYTOCHROME-RXN|EC:1.9.6.1 molecular_function owl:Class GO:0016677 biolink:NamedThing oxidoreductase activity, acting on a heme group of donors, nitrogenous group as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces a nitrogenous group. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on haem group of donors, nitrogenous group as acceptor EC:1.9.6.- molecular_function owl:Class GO:0047583 biolink:NamedThing 4-methyloxaloacetate esterase activity Catalysis of the reaction: 4-methoxy-2,4-dioxobutanoate + H(2)O = H(+) + methanol + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl oxaloacetate-4-methyl-ester oxaloacetohydrolase activity MetaCyc:4-METHYLOXALOACETATE-ESTERASE-RXN|EC:3.1.1.44|KEGG_REACTION:R01144|RHEA:10564 molecular_function owl:Class GO:1990355 biolink:NamedThing L-methionine salvage from methionine sulphoxide The generation of L-methionine from methionine sulphoxide. tmpzr1t_l9r_go_relaxed.owl methionine salvage from methionine sulphoxide al 2014-04-02T12:55:01Z biological_process owl:Class GO:0050082 biolink:NamedThing maltose phosphorylase activity Catalysis of the reaction: maltose + phosphate = D-glucose + beta-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl maltose:phosphate 1-beta-D-glucosyltransferase activity EC:2.4.1.8|MetaCyc:MALTOSE-PHOSPHORYLASE-RXN|RHEA:21116 molecular_function owl:Class GO:0006799 biolink:NamedThing polyphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a polyphosphate, the anion or salt of polyphosphoric acid. tmpzr1t_l9r_go_relaxed.owl polyphosphate biosynthesis|polyphosphate synthesis|polyphosphate formation|polyphosphate anabolism biological_process owl:Class GO:0102044 biolink:NamedThing 3-chlorobenzoate-4,5-oxygenase activity Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor <=> 3-chlorobenzoate-cis-4,5-diol + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10421 molecular_function owl:Class GO:0150110 biolink:NamedThing negative regulation of cholesterol esterification Any process that stops, prevents or reduces the frequency, rate or extent of cholesterol esterification. tmpzr1t_l9r_go_relaxed.owl bc 2019-07-23T15:34:42Z biological_process owl:Class GO:0052789 biolink:NamedThing mannan 1,3-beta-mannosidase activity Catalysis of the hydrolysis of (1->3)-beta-D-mannosidic linkages in mannans, releasing mannose. tmpzr1t_l9r_go_relaxed.owl exo-1,3-mannanase activity|exo-beta-1,3-mannase activity|exo-1,3-beta-mannanase activity|beta-1,3-mannan 3-mannanohydrolase activity|1,3-beta-D-mannan mannanohydrolase activity ai 2011-10-04T01:11:41Z molecular_function owl:Class GO:0004567 biolink:NamedThing beta-mannosidase activity Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides. tmpzr1t_l9r_go_relaxed.owl beta-D-mannoside mannohydrolase activity|beta-mannoside mannohydrolase activity|mannanase activity|mannase activity|exo-beta-D-mannanase activity|beta-D-mannosidase activity MetaCyc:3.2.1.25-RXN|Reactome:R-HSA-8853710|EC:3.2.1.25 molecular_function owl:Class GO:1905583 biolink:NamedThing cellular response to mannose Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannose stimulus. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-21T11:40:47Z biological_process owl:Class GO:1905582 biolink:NamedThing response to mannose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannose stimulus. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-21T11:40:40Z biological_process owl:Class GO:0070624 biolink:NamedThing negative regulation of thiamine biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine. tmpzr1t_l9r_go_relaxed.owl negative regulation of thiamine synthesis|downregulation of thiamine biosynthetic process|negative regulation of thiamine biosynthesis|negative regulation of thiamine anabolism|down-regulation of thiamine biosynthetic process|negative regulation of thiamin biosynthetic process|inhibition of thiamine biosynthetic process|negative regulation of thiamine formation|down regulation of thiamine biosynthetic process mah 2009-05-01T03:20:41Z biological_process owl:Class GO:0032323 biolink:NamedThing lipoate catabolic process The chemical reactions and pathways resulting in the breakdown of lipoate. tmpzr1t_l9r_go_relaxed.owl lipoic acid degradation|lipoic acid catabolism|lipoic acid breakdown biological_process owl:Class GO:0035803 biolink:NamedThing egg coat formation Construction of an egg coat, a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development. tmpzr1t_l9r_go_relaxed.owl zona pellucida assembly|ZP assembly|VE formation|vitelline envelope formation bf 2011-04-19T01:48:43Z biological_process owl:Class GO:0071948 biolink:NamedThing activation-induced B cell apoptotic process B cell apoptotic process that occurs upon engagement of either the B cell receptor or CD40. Engagement of either receptor, but not both, leads to expression of fas or related receptors that make the B cell susceptible to fas-ligand mediated death. tmpzr1t_l9r_go_relaxed.owl activation-induced B-cell apoptosis|activated B cell apoptosis|activation-induced cell death of B cells|activation-induced B cell apoptosis|activation-induced cell death of B-lymphocytes|AICD|activation-induced cell death of B-cells|activation-induced cell death of B lymphocytes|antigen-driven apoptosis mah 2010-10-06T02:47:46Z biological_process owl:Class GO:0047266 biolink:NamedThing poly(ribitol-phosphate) beta-glucosyltransferase activity Catalysis of the reaction: poly(ribitol phosphate) + UDP-D-glucose = beta-D-glucosylpoly(ribitol phosphate) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:poly(ribitol-phosphate) beta-D-glucosyltransferase activity|UDP-D-glucose polyribitol phosphate glucosyl transferase activity|UDPglucose:poly(ribitol-phosphate) beta-D-glucosyltransferase activity|uridine diphosphoglucose-poly(ribitol-phosphate) beta-glucosyltransferase activity|UDP-D-glucose:polyribitol phosphate glucosyl transferase activity|UDP glucose-poly(ribitol-phosphate) beta-glucosyltransferase activity EC:2.4.1.53|RHEA:10068|MetaCyc:2.4.1.53-RXN molecular_function owl:Class GO:0051042 biolink:NamedThing negative regulation of calcium-independent cell-cell adhesion Any process that stops, prevents, or reduces the frequency, rate or extent of calcium-independent cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl downregulation of calcium-independent cell-cell adhesion|down regulation of calcium-independent cell-cell adhesion|inhibition of calcium-independent cell-cell adhesion|down-regulation of calcium-independent cell-cell adhesion biological_process owl:Class GO:0018571 biolink:NamedThing 2,3-dihydroxy-p-cumate dioxygenase activity Catalysis of the reaction: 2,3-dihydroxy-p-cumate + O2 = 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxy-p-cumate 3,4-dioxygenase|2,3-dihydroxy-p-cumate-3,4-dioxygenase MetaCyc:RXN-666|RHEA:42568|UM-BBD_reactionID:r0397 molecular_function owl:Class GO:0004960 biolink:NamedThing thromboxane receptor activity Combining with a thromboxane (TXA) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl TXA receptor activity molecular_function owl:Class GO:0004954 biolink:NamedThing prostanoid receptor activity Combining with a prostanoid, any compound based on or derived from the prostanoate structure, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019492 biolink:NamedThing proline salvage Any process which produces the amino acid proline from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl proline cycling biological_process owl:Class GO:0010665 biolink:NamedThing regulation of cardiac muscle cell apoptotic process Any process that modulates the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl regulation of cardiac muscle cell apoptosis biological_process owl:Class GO:0033121 biolink:NamedThing regulation of purine nucleotide catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of purine nucleotide degradation|regulation of purine nucleotide breakdown|regulation of purine nucleotide catabolism biological_process owl:Class GO:0070432 biolink:NamedThing regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway Any process that modulates the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 2 (NOD2) pathway. tmpzr1t_l9r_go_relaxed.owl regulation of nucleotide-binding oligomerization domain containing 2 signalling pathway|regulation of NOD2 signaling pathway biological_process owl:Class GO:0034294 biolink:NamedThing sexual spore wall assembly The aggregation, arrangement and bonding together of a set of components to form a sexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from a product of meiosis. tmpzr1t_l9r_go_relaxed.owl sexual spore wall formation biological_process owl:Class GO:1902006 biolink:NamedThing negative regulation of proline biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of proline biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of proline synthesis|down-regulation of proline biosynthesis|downregulation of proline biosynthesis|inhibition of proline formation|down-regulation of proline anabolism|negative regulation of proline anabolism|downregulation of proline biosynthetic process|inhibition of proline biosynthesis|down regulation of proline biosynthesis|down regulation of proline anabolism|negative regulation of proline formation|downregulation of proline formation|inhibition of proline anabolism|downregulation of proline synthesis|down regulation of proline formation|inhibition of proline biosynthetic process|inhibition of proline synthesis|down-regulation of proline formation|downregulation of proline anabolism|down-regulation of proline synthesis|down regulation of proline biosynthetic process|negative regulation of proline biosynthesis|negative regulation of proline synthesis|down-regulation of proline biosynthetic process tb 2013-03-21T21:48:12Z biological_process owl:Class GO:2000215 biolink:NamedThing negative regulation of proline metabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of proline metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of proline metabolism mah 2010-11-03T02:45:24Z biological_process owl:Class GO:0061919 biolink:NamedThing process utilizing autophagic mechanism A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway. tmpzr1t_l9r_go_relaxed.owl dph 2017-07-13T19:42:14Z biological_process owl:Class GO:2000660 biolink:NamedThing negative regulation of interleukin-1-mediated signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-1-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of IL-1 alpha-mediated signaling pathway|negative regulation of interleukin-1 beta-mediated signaling pathway|negative regulation of IL-1-mediated signaling pathway|negative regulation of interleukin-1-mediated signalling pathway|negative regulation of IL-1 beta-mediated signaling pathway|negative regulation of interleukin-1 alpha-mediated signaling pathway dph 2011-05-03T07:13:37Z biological_process owl:Class GO:0022606 biolink:NamedThing establishment of proximal/distal cell polarity The specification and formation of the polarity of a cell along its proximal/distal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036288 biolink:NamedThing response to ximelagatran Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ximelagatran stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-16T05:03:56Z biological_process owl:Class GO:0032118 biolink:NamedThing horsetail-astral microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the horsetail-astral array, a structure of astral microtubules that emanates from the spindle pole body during meiosis. tmpzr1t_l9r_go_relaxed.owl horsetail-astral microtubule organization and biogenesis|horsetail-astral microtubule organisation|horsetail-astral microtubule array organization biological_process owl:Class GO:2000207 biolink:NamedThing negative regulation of ribosomal small subunit export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of ribosomal small subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl negative regulation of 40S ribosomal subunit export from nucleus|negative regulation of ribosomal small subunit transport from nucleus to cytoplasm|negative regulation of ribosomal small subunit-nucleus export|negative regulation of ribosomal small subunit export out of nucleus|negative regulation of 30S ribosomal subunit export from nucleus|negative regulation of ribosomal small subunit export from cell nucleus mah 2010-10-26T10:54:14Z biological_process owl:Class GO:0021937 biolink:NamedThing cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation The process that mediates the transfer of information from Purkinje cells to granule cell precursors resulting in an increase in rate of granule cell precursor cell proliferation. tmpzr1t_l9r_go_relaxed.owl Purkinje cell-granule cell precursor cell signalling involved in regulation of granule cell precursor cell proliferation biological_process owl:Class GO:0051654 biolink:NamedThing establishment of mitochondrion localization The directed movement of the mitochondrion to a specific location. tmpzr1t_l9r_go_relaxed.owl mitochondria positioning|establishment of mitochondria localization|mitochondrial migration|establishment of mitochondrion localisation|mitochondrion positioning biological_process owl:Class GO:0102965 biolink:NamedThing alcohol-forming fatty acyl-CoA reductase activity Catalysis of the reaction: 2 NADPH + 2 H+ + a long-chain acyl-CoA = coenzyme A + 2 NADP + a long-chain alcohol. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.84|MetaCyc:RXN-9344|RHEA:52716 molecular_function owl:Class GO:0042432 biolink:NamedThing indole biosynthetic process The chemical reactions and pathways resulting in the formation of indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan). tmpzr1t_l9r_go_relaxed.owl indole anabolism|indole biosynthesis|indole synthesis|indole formation biological_process owl:Class GO:0042431 biolink:NamedThing indole metabolic process The chemical reactions and pathways involving indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan). tmpzr1t_l9r_go_relaxed.owl indole metabolism biological_process owl:Class GO:0002946 biolink:NamedThing tRNA C5-cytosine methylation The process whereby a cytosine in a tRNA is methylated at position 5 of the cytosine. tmpzr1t_l9r_go_relaxed.owl tRNA 5-methylcytosine biosynthesis hjd 2012-12-07T14:23:13Z biological_process owl:Class GO:0008595 biolink:NamedThing anterior/posterior axis specification, embryo The specification of the anterior/posterior axis of the embryo by the products of genes expressed maternally and genes expressed in the zygote. tmpzr1t_l9r_go_relaxed.owl anterior/posterior axis determination, embryo biological_process owl:Class GO:0036481 biolink:NamedThing intrinsic apoptotic signaling pathway in response to hydrogen peroxide A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl H2O2-induced intrinsic apoptotic signaling pathway|hydrogen peroxide-induced intrinsic apoptotic signaling pathway|hydrogen peroxide-induced apoptosis|intrinsic apoptotic signaling pathway in response to H2O2 bf 2014-08-14T13:19:21Z biological_process owl:Class GO:0035361 biolink:NamedThing Cul8-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul8 subfamily and a RING domain protein form the catalytic core. In S. cerevisiae, Mms1p acts as the adaptor protein and substrate specificity is conferred by any of a number of different proteins. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-05T02:41:12Z cellular_component owl:Class GO:0022881 biolink:NamedThing protein-N(PI)-phosphohistidine-N-acetylgalactosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetylgalactosamine(out) = protein histidine + N-acetylgalactosamine phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine PTS transporter activity molecular_function owl:Class GO:0033551 biolink:NamedThing monopolin complex A protein complex required for clamping microtubule binding sites, ensuring orientation of sister kinetochores to the same pole (mono-orientation) during meiosis I. In the yeast S. cerevisiae this complex consists of Csm1p, Lrs4p, Hrr25p and Mam1p; in S. pombe Psc1 and Mde4 have been identified as subunits. tmpzr1t_l9r_go_relaxed.owl monopolin subcomplex Csm1/Lrs4|Pcs1/Mde4 complex cellular_component owl:Class GO:0034124 biolink:NamedThing regulation of MyD88-dependent toll-like receptor signaling pathway Any process that modulates the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation ofMyD88-dependent TLR signaling pathway|regulation ofMyD88-dependent toll-like receptor signalling pathway biological_process owl:Class GO:0042122 biolink:NamedThing alginic acid catabolic process The chemical reactions and pathways resulting in the breakdown of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds). tmpzr1t_l9r_go_relaxed.owl alginate catabolism|alginic acid catabolism|alginic acid breakdown|alginic acid degradation|alginate catabolic process biological_process owl:Class GO:1904195 biolink:NamedThing regulation of granulosa cell proliferation Any process that modulates the frequency, rate or extent of granulosa cell proliferation. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-07T17:02:25Z biological_process owl:Class GO:0005294 biolink:NamedThing neutral L-amino acid secondary active transmembrane transporter activity Enables the transfer of a neutral L-amino acid from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl neutral L-amino acid porter activity molecular_function owl:Class GO:0070406 biolink:NamedThing glutamine binding Binding to glutamine, 2,5-diamino-5-oxopentanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015954 biolink:NamedThing pyrimidine ribonucleotide interconversion The chemical reactions and pathways by which a pyrimidine ribonucleotide is synthesized from another pyrimidine ribonucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018137 biolink:NamedThing peptide cross-linking via glycine thiazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl glycine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0241 biological_process owl:Class GO:1904106 biolink:NamedThing protein localization to microvillus A process in which a protein is transported to, or maintained in, a location within a microvillus. tmpzr1t_l9r_go_relaxed.owl protein localisation in microvillus|protein localisation to microvillus|protein localization in microvillus kmv 2015-04-01T18:14:41Z biological_process owl:Class GO:1904399 biolink:NamedThing heparan sulfate binding Binding to heparan sulfate. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T19:56:54Z molecular_function owl:Class GO:0048653 biolink:NamedThing anther development The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018271 biolink:NamedThing biotin-protein ligase activity Catalysis of the reaction: ATP + biotin + protein = AMP + diphosphate + biotin-protein. tmpzr1t_l9r_go_relaxed.owl biotin-apoprotein ligase activity Reactome:R-HSA-9035988|Reactome:R-HSA-2993802|Reactome:R-HSA-3323184|MetaCyc:BIOTINLIG-RXN|Reactome:R-HSA-2993814|Reactome:R-HSA-4167511|EC:6.3.4.-|Reactome:R-HSA-9035987|Reactome:R-HSA-2993447|Reactome:R-HSA-9035990|Reactome:R-HSA-2993799 GO:0000106 molecular_function owl:Class GO:0046220 biolink:NamedThing pyridine biosynthetic process The chemical reactions and pathways resulting in the formation of pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor. tmpzr1t_l9r_go_relaxed.owl pyridine biosynthesis|pyridine formation|pyridine synthesis|pyridine anabolism biological_process owl:Class GO:0080040 biolink:NamedThing positive regulation of cellular response to phosphate starvation Any process that activates or increases the frequency, rate or extent of cellular response to phosphate starvation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072670 biolink:NamedThing mitochondrial tRNA threonylcarbamoyladenosine modification The attachment of a carbonyl group and a threonine to the amino group of the adenine residue immediately 3' of the anticodon, in mitochondrial tRNAs that decode ANN codons (where N is any base). tmpzr1t_l9r_go_relaxed.owl mitochondrial tRNA t6A modification mah 2011-02-18T11:34:35Z biological_process owl:Class GO:0002949 biolink:NamedThing tRNA threonylcarbamoyladenosine modification The attachment of a carbonyl group and a threonine to the amino group of the adenine residue immediately 3' of the anticodon, in tRNAs that decode ANN codons (where N is any base). tmpzr1t_l9r_go_relaxed.owl threonylcarbamoyladenosine biosynthesis|threonylcarbamoyladenosine formation|threonylcarbamoyladenosine biosynthetic process|threonylcarbamoyladenosine anabolism|t6A biosynthetic process|t6A biosynthesis|t6A tRNA modification|threonylcarbamoyladenosine synthesis hjd 2014-09-19T10:15:27Z GO:0070526 biological_process owl:Class GO:0075285 biolink:NamedThing sexual sporulation resulting in formation of a multicellular or syncytial spore The formation of multicellular or syncytial spore via septations derived from meiosis. A multicellular or syncytial spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034293 biolink:NamedThing sexual sporulation The formation of spores derived from the products of meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic sporulation|meiotic spore formation|sexual spore formation biological_process owl:Class GO:0047668 biolink:NamedThing amygdalin beta-glucosidase activity Catalysis of the reaction: (R)-amygdalin + H(2)O = (R)-prunasin + D-glucose. tmpzr1t_l9r_go_relaxed.owl amygdalin b-glucosidase activity|amygdalin beta-D-glucohydrolase activity|amygdalin hydrolase activity|amygdalin glucosidase activity|amygdalinase|(R)-amygdalin beta-glucosidase activity RHEA:14177|KEGG_REACTION:R02985|MetaCyc:AMYGDALIN-BETA-GLUCOSIDASE-RXN|EC:3.2.1.117 GO:0080080 molecular_function owl:Class GO:0046722 biolink:NamedThing lactic acid secretion The controlled release of lactic acid, 2-hydroxypropanoic acid, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl lactate secretion biological_process owl:Class GO:0006738 biolink:NamedThing nicotinamide riboside catabolic process The chemical reactions and pathways resulting in the breakdown of nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide riboside breakdown|nicotinamide riboside catabolism|N-ribosylnicotinamide catabolic process|nicotinamide riboside degradation biological_process owl:Class GO:0016185 biolink:NamedThing synaptic vesicle budding from presynaptic endocytic zone membrane Evagination of the presynaptic membrane, resulting in the formation of a new synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle budding from pre-synaptic membrane|synaptic vesicle budding involved in synaptic vesicle endocytosis biological_process owl:Class GO:0070142 biolink:NamedThing synaptic vesicle budding Evagination of a membrane to form a synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060082 biolink:NamedThing eye blink reflex The reflex process in which a mechanical stimulus applied to the eye elicits a response of the eyelid closing. tmpzr1t_l9r_go_relaxed.owl nictitating membrane reflex biological_process owl:Class GO:1900439 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl upregulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus|activation of filamentous growth of a population of unicellular organisms in response to chemical stimulus|up regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus|up-regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus di 2012-04-25T05:55:35Z biological_process owl:Class GO:1903786 biolink:NamedThing regulation of glutathione biosynthetic process Any process that modulates the frequency, rate or extent of glutathione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of glutathione anabolism|regulation of glutathione biosynthesis|regulation of glutathione synthesis|regulation of glutathione formation bf 2015-01-08T17:14:49Z biological_process owl:Class GO:0031342 biolink:NamedThing negative regulation of cell killing Any process that stops, prevents, or reduces the frequency, rate or extent of cell killing. tmpzr1t_l9r_go_relaxed.owl down regulation of cell killing|down-regulation of cell killing|downregulation of cell killing|inhibition of cell killing biological_process owl:Class GO:0001773 biolink:NamedThing myeloid dendritic cell activation The change in morphology and behavior of a dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060473 biolink:NamedThing cortical granule A secretory vesicle that is stored under the cell membrane of an egg. These vesicles fuse with the egg plasma membrane as part of egg activation and are part of the block to polyspermy. tmpzr1t_l9r_go_relaxed.owl cortical vesicle cellular_component owl:Class GO:0102646 biolink:NamedThing 14betaH-scalarane-17alpha-19-diol synthase activity Catalysis of the reaction: 14betaH-scalarane-17alpha-19-diol <=> all-trans-geranylfarnesol + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15759 molecular_function owl:Class GO:0050413 biolink:NamedThing D-alanine 2-hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + D-alanine + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + 2-methylserine. tmpzr1t_l9r_go_relaxed.owl 5,10-methylenetetrahydrofolate:D-alanine 2-hydroxymethyltransferase activity|2-methylserine hydroxymethyltransferase activity|D-alanine hydroxymethyltransferase activity EC:2.1.2.7|KEGG_REACTION:R01225|MetaCyc:D-ALANINE-HYDROXYMETHYLTRANSFERASE-RXN|RHEA:10064 molecular_function owl:Class GO:0010715 biolink:NamedThing regulation of extracellular matrix disassembly Any process that modulates the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl regulation of extracellular matrix breakdown|regulation of extracellular matrix degradation biological_process owl:Class GO:0046064 biolink:NamedThing dCMP biosynthetic process The chemical reactions and pathways resulting in the formation of dCMP, deoxycytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl dCMP anabolism|dCMP synthesis|dCMP formation|dCMP biosynthesis biological_process owl:Class GO:0070587 biolink:NamedThing regulation of cell-cell adhesion involved in gastrulation Any process that modulates the frequency, rate, or extent of attachment of a cell to another cell affecting gastrulation. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-24T02:51:07Z biological_process owl:Class GO:0016935 biolink:NamedThing glycine-gated chloride channel complex A protein complex that forms a transmembrane channel through which chloride ions may pass in response to glycine binding to the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901223 biolink:NamedThing negative regulation of NIK/NF-kappaB signaling Any process that stops, prevents or reduces the frequency, rate or extent of NIK/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of p52-dependent NF-kappaB signaling|down regulation of NIK/NF-kappaB cascade|down-regulation of noncanonical NF-kappaB signaling|negative regulation of non-canonical NF-KB signaling|negative regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|inhibition of p52-dependent NF-kappaB signaling|negative regulation of NF-kappaB import into nucleus|downregulation of non-canonical NF-KB signaling|down regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|down regulation of noncanonical NF-kappaB signaling|down regulation of non-canonical NF-KB signaling|downregulation of NIK/NF-kappaB cascade|negative regulation of noncanonical NF-kappaB signaling|down-regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway|inhibition of noncanonical NF-kappaB signaling|negative regulation of NIK/NF-kappaB cascade|down regulation of p52-dependent NF-kappaB signaling|inhibition of NIK/NF-kappaB cascade|down-regulation of NIK/NF-kappaB cascade|downregulation of noncanonical NF-kappaB signaling|inhibition of noncanonical nuclear factor kappaB (NF-kappaB) pathway|down-regulation of p52-dependent NF-kappaB signaling|inhibition of non-canonical NF-KB signaling|down-regulation of non-canonical NF-KB signaling|downregulation of p52-dependent NF-kappaB signaling|downregulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway hjd 2012-08-06T20:27:39Z GO:0042347 biological_process owl:Class GO:0019715 biolink:NamedThing peptidyl-aspartic acid hydroxylation to form L-erythro-beta-hydroxyaspartic acid The hydroxylation of peptidyl-aspartic acid to form peptidyl-L-erythro-beta-hydroxyaspartic acid; catalyzed by peptide-aspartate beta-dioxygenase (EC:1.14.11.16). tmpzr1t_l9r_go_relaxed.owl RESID:AA0027 See also the molecular function term 'peptide-aspartate beta-dioxygenase activity ; GO:0004597'. biological_process owl:Class GO:0042264 biolink:NamedThing peptidyl-aspartic acid hydroxylation The hydroxylation of peptidyl-aspartic acid to form peptidyl-hydroxyaspartic acid. tmpzr1t_l9r_go_relaxed.owl peptidyl-aspartic acid/asparagine hydroxylation biological_process owl:Class GO:0031282 biolink:NamedThing regulation of guanylate cyclase activity Any process that modulates the frequency, rate or extent of guanylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000961 biolink:NamedThing negative regulation of mitochondrial RNA catabolic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102928 biolink:NamedThing beta-solanine rhamnosyltransferase activity Catalysis of the reaction: beta-solanine + UDP-L-rhamnose = solanine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8884 molecular_function owl:Class GO:1904632 biolink:NamedThing cellular response to glucoside Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucoside stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to glucosides sl 2015-08-28T14:01:37Z biological_process owl:Class GO:0008996 biolink:NamedThing ribonuclease G activity Catalysis of the cleavage of single-stranded RNA that is monophosphorylated at its 5'-end; cleavage occurs predominantly at positions 5 and 6 nucleotides from the 5'-end and in A + U-rich regions, and is blocked by the presence of a 5'-triphosphate group. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036068 biolink:NamedThing light-independent chlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors, which occur in the absence of light. tmpzr1t_l9r_go_relaxed.owl light-independent chlorophyll biosynthesis|light-independent chlorophyll formation|light-independent chlorophyll synthesis|light independent chlorophyll biosynthetic process|light-independent chlorophyll anabolism bf 2011-12-15T04:44:18Z biological_process owl:Class GO:0044102 biolink:NamedThing purine deoxyribosyltransferase activity Catalysis of deoxyribose exchange between purine deoxyribonucleoside as a donor and purine base as an acceptor. tmpzr1t_l9r_go_relaxed.owl PTD|purine 2'-deoxyribosyltransferase activity jl 2009-07-09T03:40:15Z molecular_function owl:Class GO:0140340 biolink:NamedThing cerebroside transfer activity Directly binding to a cerebroside and delivering it either to an acceptor molecule or to a specific location. tmpzr1t_l9r_go_relaxed.owl cerebroside carrier activity pg 2019-05-16T11:37:31Z molecular_function owl:Class GO:1900036 biolink:NamedThing positive regulation of cellular response to heat Any process that activates or increases the frequency, rate or extent of cellular response to heat. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular response to heat stress|up-regulation of cellular response to heat stress|upregulation of cellular response to heat|activation of cellular response to heat|positive regulation of cellular response to heat stress|activation of cellular response to heat stress|up-regulation of cellular response to heat|up regulation of cellular response to heat|upregulation of cellular response to heat stress yaf 2012-01-17T09:27:47Z biological_process owl:Class GO:0102902 biolink:NamedThing isopimaradienal hydroxylase activity Catalysis of the reaction: isopimaradienal + NADPH + O2 <=> isopimaric acid + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8538 molecular_function owl:Class GO:0010094 biolink:NamedThing specification of carpel identity The process in which a floral organ primordium acquires the carpel identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150061 biolink:NamedThing amylin receptor 3 signaling pathway A series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 3 (AMY3), a G protein-coupled receptor complex, on the surface of the target cell. The AMY3 signaling pathway can also be initiated by the amyloid-beta complex. AMY3 signaling results in increased import of calcium ions into the cytosol across plasma membrane, increased phosphorylation of ERK1/2, Act, and a PKA regulatory subunit II, as well as increased expression of cFos. tmpzr1t_l9r_go_relaxed.owl AMY3 signaling pathway bc 2018-06-21T11:02:09Z biological_process owl:Class GO:0097647 biolink:NamedThing amylin receptor signaling pathway A series of molecular signals initiated by an extracellular amylin combining with a dimeric amylin receptor on the surface of the target cell. tmpzr1t_l9r_go_relaxed.owl amilyn receptor signalling pathway pr 2014-09-09T17:49:52Z biological_process owl:Class GO:0090546 biolink:NamedThing chlorophyll fluorescence The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is re-emitted as light. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-27T14:23:27Z biological_process owl:Class GO:0010759 biolink:NamedThing positive regulation of macrophage chemotaxis Any process that increases the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044481 biolink:NamedThing envenomation resulting in proteolysis in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant hydrolysis of proteins in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T03:01:16Z biological_process owl:Class GO:1990192 biolink:NamedThing collecting lymphatic vessel constriction A decrease in the diameter of collecting lymphatic vessels. tmpzr1t_l9r_go_relaxed.owl lymphatic vessel myogenic constriction sl 2013-09-12T14:46:05Z biological_process owl:Class GO:0050008 biolink:NamedThing isopiperitenone delta-isomerase activity Catalysis of the reaction: isopiperitenone = piperitenone. tmpzr1t_l9r_go_relaxed.owl isopiperitenone delta8-delta4-isomerase activity|isopiperitenone D-isomerase activity RHEA:21516|KEGG_REACTION:R03782|EC:5.3.3.11|MetaCyc:ISOPIPERITENONE-DELTA-ISOMERASE-RXN molecular_function owl:Class GO:0010111 biolink:NamedThing glyoxysome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. tmpzr1t_l9r_go_relaxed.owl glyoxysome organisation|glyoxysome organization and biogenesis biological_process owl:Class GO:0070700 biolink:NamedThing BMP receptor binding Binding to a BMP receptor. tmpzr1t_l9r_go_relaxed.owl bone morphogenetic protein receptor binding mah 2009-06-04T04:24:16Z molecular_function owl:Class GO:0070696 biolink:NamedThing transmembrane receptor protein serine/threonine kinase binding Binding to a receptor that spans a cell membrane and possesses protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-04T03:57:42Z molecular_function owl:Class GO:0150164 biolink:NamedThing miRNA-mediated regulation of transcription by RNA polymerase II Any process mediated by a microRNA (miRNA) that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:16:32Z biological_process owl:Class GO:0045933 biolink:NamedThing positive regulation of muscle contraction Any process that activates or increases the frequency, rate or extent of muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of muscle contraction|upregulation of muscle contraction|stimulation of muscle contraction|up regulation of muscle contraction|activation of muscle contraction biological_process owl:Class GO:0097179 biolink:NamedThing protease inhibitor complex A heterodimeric protein complex that contains a protease inhibitor and a protease; formation of the complex inhibits protease activity. tmpzr1t_l9r_go_relaxed.owl peptidase inhibitor complex pr 2011-10-16T08:53:44Z cellular_component owl:Class GO:0098716 biolink:NamedThing nickel cation import across plasma membrane The directed movement of nickel cations from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl nickel cation import into cell tb 2012-11-16T16:12:53Z GO:0090509 biological_process owl:Class GO:0018306 biolink:NamedThing iron incorporation into iron-sulfur cluster via bis-L-cysteinyl-L-N3'-histidino-L-serinyl tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via bis-L-cysteinyl-L-N3'-histidino-L-serinyl tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via bis-L-cysteinyl-L-N3'-histidino-L-serinyl tetrairon tetrasulphide RESID:AA0289 biological_process owl:Class GO:1900115 biolink:NamedThing extracellular regulation of signal transduction Any regulation of signal transduction that takes place in the extracellular region. tmpzr1t_l9r_go_relaxed.owl regulation of signalling pathway in extracellular region|regulation of signaling pathway in extracellular region bf 2012-02-22T10:21:48Z biological_process owl:Class GO:0048675 biolink:NamedThing axon extension Long distance growth of a single axon process involved in cellular development. tmpzr1t_l9r_go_relaxed.owl axon extension involved in development GO:0048676 biological_process owl:Class GO:0044229 biolink:NamedThing host cell periplasmic space The region between the inner (cytoplasmic) and outer host membrane (Gram-negative Bacteria) or inner host membrane and host cell wall (Fungi). tmpzr1t_l9r_go_relaxed.owl jl 2009-12-03T01:52:31Z cellular_component owl:Class GO:1901052 biolink:NamedThing sarcosine metabolic process The chemical reactions and pathways involving sarcosine. tmpzr1t_l9r_go_relaxed.owl sarcosine metabolism yaf 2012-06-28T04:52:04Z biological_process owl:Class GO:0033897 biolink:NamedThing ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. tmpzr1t_l9r_go_relaxed.owl ribonuclease (non-base specific) activity|RNase T2 activity|Escherichia coli ribonuclease I' ribonuclease PP2 activity|RNase (non-base specific) activity|acid RNase activity|ribonuclease M activity|non-base specific ribonuclease activity|RNase II activity|RNAase CL activity|ribonnuclease (non-base specific) activity|nonbase-specific RNase activity|ribonuclease II activity|RNase M activity|ribonucleate nucleotido-2'-transferase (cyclizing) activity|ribonuclease N2 activity|ribonuclease U4 activity|base-non-specific ribonuclease activity|acid ribonuclease activity|Escherichia coli ribonuclease II activity|RNase Ms activity|nonspecific RNase activity|ribonuclease PP3 activity|ribonucleate 3'-oligonucleotide hydrolase activity MetaCyc:3.1.27.1-RXN|EC:4.6.1.19 molecular_function owl:Class GO:0046144 biolink:NamedThing D-alanine family amino acid metabolic process The chemical reactions and pathways involving D-alanine and related amino acids. tmpzr1t_l9r_go_relaxed.owl D-alanine family amino acid metabolism biological_process owl:Class GO:0036393 biolink:NamedThing thiocyanate peroxidase activity Catalysis of the reaction: thiocyanate (SCN-) + hydrogen peroxide (H2O2) = hypothiocyanite (OSCN-) + 2 H2O. Catalyzes the hydrogen peroxide oxidation of thiocyanate. tmpzr1t_l9r_go_relaxed.owl lactoperoxidase activity bf 2013-06-20T16:03:57Z molecular_function owl:Class GO:1901181 biolink:NamedThing negative regulation of cellular response to caffeine Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to caffeine. tmpzr1t_l9r_go_relaxed.owl down regulation of cellular response to caffeine|down-regulation of cellular response to caffeine|inhibition of cellular response to caffeine|downregulation of cellular response to caffeine al 2012-07-19T04:11:46Z biological_process owl:Class GO:1901765 biolink:NamedThing phosphinothricin catabolic process The chemical reactions and pathways resulting in the breakdown of phosphinothricin. tmpzr1t_l9r_go_relaxed.owl phosphinothricin catabolism|phosphinothricin breakdown|phosphinothricin degradation yaf 2013-01-15T10:02:42Z biological_process owl:Class GO:1902257 biolink:NamedThing negative regulation of apoptotic process involved in outflow tract morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl inhibition of apoptotic process involved in outflow tract morphogenesis|down-regulation of apoptotic process involved in outflow tract morphogenesis|down regulation of apoptosis involved in outflow tract morphogenesis|down regulation of apoptotic process involved in outflow tract morphogenesis|down-regulation of apoptosis involved in outflow tract morphogenesis|downregulation of apoptosis involved in outflow tract morphogenesis|negative regulation of apoptosis involved in outflow tract morphogenesis|inhibition of apoptosis involved in outflow tract morphogenesis|downregulation of apoptotic process involved in outflow tract morphogenesis dph 2013-06-24T19:12:30Z biological_process owl:Class GO:1903255 biolink:NamedThing hercynylselenocysteine biosynthetic process The chemical reactions and pathways resulting in the formation of hercynylselenocysteine. tmpzr1t_l9r_go_relaxed.owl hercynylselenocysteine biosynthesis|hercynylselenocysteine anabolism|hercynylselenocysteine formation|hercynylselenocysteine synthesis mah 2014-08-06T09:14:16Z biological_process owl:Class GO:0038159 biolink:NamedThing C-X-C chemokine receptor CXCR4 signaling pathway A series of molecular signals initiated by a the C-X-C chemokine type 4 receptor on the surface of a cell binding to one of it's physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CXCR4 signaling pathway bf 2012-05-14T01:33:17Z biological_process owl:Class GO:0019511 biolink:NamedThing peptidyl-proline hydroxylation The hydroxylation of peptidyl-proline to form peptidyl-hydroxyproline. tmpzr1t_l9r_go_relaxed.owl GO:0006472 biological_process owl:Class GO:0008147 biolink:NamedThing structural constituent of bone The action of a molecule that contributes to the structural integrity of bone. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018162 biolink:NamedThing peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine The formation of a cross-link between peptidyl-cysteine and peptidyl-threonine via the formation of S-(2-aminovinyl)-3-methyl-D-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0253 biological_process owl:Class GO:0047407 biolink:NamedThing ADP-ribosyl-[dinitrogen reductase] hydrolase activity Catalysis of the reaction: ADP-ribosyl-[dinitrogen reductase] = adenosine diphosphate ribose + [dinitrogen reductase]. tmpzr1t_l9r_go_relaxed.owl azoferredoxin glycosidase activity|ADP-D-ribosyl-dinitrogen reductase ADP-ribosylhydrolase activity|ADP-ribosyl-dinitrogen reductase hydrolase activity|dinitrogenase reductase-activating glycohydrolase activity|azoferredoxin-activating enzymes|dinitrogenase reductase activating glycohydrolase activity|ADP-ribosyl glycohydrolase activity EC:3.2.2.24|RHEA:14493|MetaCyc:3.2.2.24-RXN molecular_function owl:Class GO:0002123 biolink:NamedThing irritable aggressive behavior Aggressive behavior induced by frustration and directed against an available target. tmpzr1t_l9r_go_relaxed.owl irritable aggression biological_process owl:Class GO:1990253 biolink:NamedThing cellular response to leucine starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of leucine. tmpzr1t_l9r_go_relaxed.owl al 2013-12-10T11:55:10Z biological_process owl:Class GO:0047166 biolink:NamedThing 1-alkenylglycerophosphoethanolamine O-acyltransferase activity Catalysis of the reaction: 1-alkenylglycerophosphoethanolamine + acyl-CoA = 1-alkenyl-2-acyl-glycerophosphoethanolamine + CoA. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:1-alkenylglycerophosphoethanolamine O-acyltransferase activity EC:2.3.1.121|MetaCyc:2.3.1.121-RXN|RHEA:16245 molecular_function owl:Class GO:0031014 biolink:NamedThing troponin T binding Binding to troponin T, the tropomyosin-binding subunit of the troponin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047676 biolink:NamedThing arachidonate-CoA ligase activity Catalysis of the reaction: arachidonate + ATP + CoA = AMP + arachidonoyl-CoA + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl arachidonate:CoA ligase (AMP-forming)|arachidonoyl-CoA synthetase activity EC:6.2.1.15|KEGG_REACTION:R01598|RHEA:19713|MetaCyc:ARACHIDONATE--COA-LIGASE-RXN molecular_function owl:Class GO:0050399 biolink:NamedThing xanthommatin reductase activity Catalysis of the reaction: 5,12-dihydroxanthommatin + NAD(+) = H(+) + NADH + xanthommatin. tmpzr1t_l9r_go_relaxed.owl 5,12-dihydroxanthommatin:NAD+ oxidoreductase activity EC:1.3.1.41|RHEA:13417|MetaCyc:XANTHOMMATIN-REDUCTASE-RXN|KEGG_REACTION:R03787 molecular_function owl:Class GO:0042777 biolink:NamedThing plasma membrane ATP synthesis coupled proton transport The transport of protons across the plasma membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. tmpzr1t_l9r_go_relaxed.owl ATP synthesis coupled proton transport biological_process owl:Class GO:0043995 biolink:NamedThing histone acetyltransferase activity (H4-K5 specific) Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 5) = CoA + histone H4 N6-acetyl-L-lysine (position 5). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H4-K5 specific) molecular_function owl:Class GO:0022018 biolink:NamedThing lateral ganglionic eminence cell proliferation The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the expansion of the cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060431 biolink:NamedThing primary lung bud formation The morphogenetic process in which the foregut region specified to become the lung forms the initial left and right buds. tmpzr1t_l9r_go_relaxed.owl lung formation biological_process owl:Class GO:0102419 biolink:NamedThing sn-2-glycerol-3-phosphate omega-OH-C22:0-CoA acyl transferase activity Catalysis of the reaction: omega-hydroxy-C22:0-CoA + sn-glycerol 3-phosphate = coenzyme A + 2-omega-hydroxy-C22:0-LPA. tmpzr1t_l9r_go_relaxed.owl RHEA:33559|MetaCyc:RXN-13803|EC:2.3.1.198 molecular_function owl:Class GO:0006708 biolink:NamedThing ecdysone catabolic process The chemical reactions and pathways resulting in the breakdown of ecdysone, (22R)-2-beta,3-beta,14,22,25-pentahydroxycholest-7-en-6-one, an ecdysteroid found in insects. tmpzr1t_l9r_go_relaxed.owl ecdysone breakdown|ecdysone degradation|ecdysone catabolism biological_process owl:Class GO:0033763 biolink:NamedThing proline 3-hydroxylase activity Catalysis of the reaction: L-proline + 2-oxoglutarate + O2 = cis-3-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl P-3-H|L-proline,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity EC:1.14.11.28|RHEA:20265|MetaCyc:1.14.11.28-RXN molecular_function owl:Class GO:0072101 biolink:NamedThing specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in the establishment of the ureteric bud such that there is a similar arrangement in form and relationship of parts along its anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl specification of ureteric bud anterior/posterior symmetry by BMP signalling pathway|specification of ureteric bud anterior/posterior asymmetry by BMP signaling pathway mah 2010-02-10T02:21:03Z biological_process owl:Class GO:1902792 biolink:NamedThing pyrroline-5-carboxylate reductase complex A protein complex which is capable of pyrroline-5-carboxylate reductase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PYCR1 in human (P32322) in PMID:2722838 (inferred from direct assay). bhm 2014-03-24T09:55:22Z cellular_component owl:Class GO:0071742 biolink:NamedThing IgE immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgE immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgE immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0097626 biolink:NamedThing low-affinity L-arginine transmembrane transporter activity Enables the transfer of L-arginine from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity L-arginine transmembrane transporter activity pr 2014-08-20T14:24:22Z molecular_function owl:Class GO:0050442 biolink:NamedThing 3-propylmalate synthase activity Catalysis of the reaction: glyoxylate + H(2)O + pentanoyl-CoA = 3-propylmalate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl beta-n-propylmalate synthase activity|3-propylmalate glyoxylate-lyase (CoA-pentanoylating) activity|3-(n-propyl)-malate synthase activity|N-propylmalate synthase activity|pentanoyl-CoA:glyoxylate C-pentanoyltransferase (thioester-hydrolysing, 1-carboxybutyl-forming) KEGG_REACTION:R03040|MetaCyc:3-PROPYLMALATE-SYNTHASE-RXN|EC:2.3.3.12|RHEA:14457 molecular_function owl:Class GO:0098540 biolink:NamedThing lumenal side of trans-Golgi network transport vesicle membrane The side (leaflet) of the trans-Golgi network transport vesicle membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal side of trans-Golgi network transport vesicle membrane dos 2013-10-24T11:55:02Z cellular_component owl:Class GO:0031703 biolink:NamedThing type 2 angiotensin receptor binding Binding to a type 2 angiotensin receptor. tmpzr1t_l9r_go_relaxed.owl AT2 receptor binding|type 2 angiotensin receptor ligand molecular_function owl:Class GO:0031701 biolink:NamedThing angiotensin receptor binding Binding to an angiotensin receptor. tmpzr1t_l9r_go_relaxed.owl angiotensin receptor ligand molecular_function owl:Class GO:1902802 biolink:NamedThing regulation of siRNA-dependent facultative heterochromatin assembly Any process that modulates the frequency, rate or extent of siRNA-dependent facultative heterochromatin assembly. tmpzr1t_l9r_go_relaxed.owl regulation of heterochromatin domain formation|regulation of HOOD assembly|regulation of heterochromatin domain assembly|regulation of HOOD formation https://github.com/geneontology/go-ontology/issues/22326 mah 2014-03-25T14:44:54Z biological_process owl:Class GO:0047151 biolink:NamedThing methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + tRNA containing uridine at position 54 + FADH + H+ = tetrahydrofolate + tRNA containing ribothymidine at position 54 + FAD+. tmpzr1t_l9r_go_relaxed.owl methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH-oxidizing) activity|methylenetetrahydrofolate-transfer ribonucleate uracil 5-methyltransferase activity|5,10-methylenetetrahydrofolate:tRNA (uracil-5-)-methyltransferase activity|folate-dependent ribothymidyl synthase activity|5,10-methylenetetrahydrofolate:tRNA-UPsiC (uracil-5-)-methyl-transferase activity KEGG_REACTION:R03704|EC:2.1.1.74|RHEA:16873|MetaCyc:2.1.1.74-RXN molecular_function owl:Class GO:0070396 biolink:NamedThing lipoteichoic acid catabolic process The chemical reactions and pathways resulting in the breakdown of lipoteichoic acid, which is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl lipoteichoic acid breakdown|lipoteichoic acid degradation|lipoteichoic acid catabolism biological_process owl:Class GO:0070394 biolink:NamedThing lipoteichoic acid metabolic process The chemical reactions and pathways involving lipoteichoic acid, which is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl LTA metabolic process|lipoteichoic acid metabolism biological_process owl:Class GO:0042498 biolink:NamedThing diacyl lipopeptide binding Binding to a lipopeptide containing a nonprotein moiety consisting of two acyl groups. tmpzr1t_l9r_go_relaxed.owl diacylated lipopeptide binding|bacterial diacyl lipopeptide binding|bacterial diacyl lipoprotein binding Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. molecular_function owl:Class GO:0071723 biolink:NamedThing lipopeptide binding Binding to a lipopeptide, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds and containing a nonprotein group consisting of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl bacterial lipopeptide binding|bacterial lipoprotein binding Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. mah 2010-03-17T02:13:21Z molecular_function owl:Class GO:0061630 biolink:NamedThing ubiquitin protein ligase activity Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. tmpzr1t_l9r_go_relaxed.owl ER-associated E3 ligase|ubiquitin ligase activity|E3 involved in endoplasmic reticulum-associated degradation|ubiquitin ligase activity involved in ER-associated degradation pathway|ubiquitin protein ligase activity involved in ER-associated degradation pathway|ubiquitin-protein ligase activity involved in positive regulation of mitotic metaphase/anaphase transition|APC-Cdc20 complex activity|APC-fizzy related complex activity|protein ubiquitination activity|ubiquitin protein ligase activity involved in chloroplast disassembly|ubiquitin protein ligase activity involved in ERAD pathway|E3 Reactome:R-HSA-8939706|Reactome:R-HSA-8953946|Reactome:R-HSA-4608852|Reactome:R-HSA-8939335|Reactome:R-HSA-6804879|Reactome:R-HSA-5635864|Reactome:R-HSA-934604|Reactome:R-HSA-5674022|Reactome:R-HSA-8948775|Reactome:R-HSA-1225956|Reactome:R-HSA-5246693|Reactome:R-HSA-6782943|Reactome:R-HSA-5632648|Reactome:R-HSA-4641159|Reactome:R-HSA-990526|Reactome:R-HSA-5610737|Reactome:R-HSA-8952382|Reactome:R-HSA-8851011|Reactome:R-HSA-6798373|Reactome:R-HSA-68946|Reactome:R-HSA-8956026|Reactome:R-HSA-936475|Reactome:R-HSA-6781867|Reactome:R-HSA-5654679|Reactome:R-HSA-8848829|Reactome:R-HSA-9604629|Reactome:R-HSA-5690827|Reactome:R-HSA-5654684|Reactome:R-HSA-69015|Reactome:R-HSA-3640861|Reactome:R-HSA-6804441|Reactome:R-HSA-5654677|Reactome:R-HSA-4641253|Reactome:R-HSA-6807106|Reactome:R-HSA-8942101|Reactome:R-HSA-1504190|Reactome:R-HSA-5635856|Reactome:R-HSA-936462|Reactome:R-HSA-8854041|Reactome:R-HSA-8866546|Reactome:R-HSA-6790487|Reactome:R-HSA-5684071|Reactome:R-HSA-8867288|Reactome:R-HSA-6804253|Reactome:R-HSA-8877003|Reactome:R-HSA-9011300|Reactome:R-HSA-8938773|Reactome:R-HSA-5658424|Reactome:R-HSA-9706356|Reactome:R-HSA-9009308|Reactome:R-HSA-8948832|Reactome:R-HSA-8943040|Reactome:R-HSA-8956684|Reactome:R-HSA-9009403|Reactome:R-HSA-3322429|Reactome:R-HSA-8854051|Reactome:R-HSA-8952419|Reactome:R-HSA-9706354|Reactome:R-HSA-8943080|Reactome:R-HSA-9008479|Reactome:R-HSA-9686920|Reactome:R-HSA-9008076|Reactome:R-HSA-8854628|Reactome:R-HSA-8943003|Reactome:R-HSA-5689111|Reactome:R-HSA-5654672|Reactome:R-HSA-9033485|Reactome:R-HSA-5682858|Reactome:R-HSA-4641129|Reactome:R-HSA-5687081|Reactome:R-HSA-8876258|Reactome:R-HSA-9021523|Reactome:R-HSA-8875431|Reactome:R-HSA-6804942|Reactome:R-HSA-9686969|Reactome:R-HSA-201445|Reactome:R-HSA-8875183|Reactome:R-HSA-4641246|Reactome:R-HSA-6785361|Reactome:R-HSA-6804724|Reactome:R-HSA-8938815|Reactome:R-HSA-6807134|Reactome:R-HSA-8866856 This enzyme catalyzes a transferase reaction. dph 2014-05-18T09:11:21Z GO:1904264|GO:0090622|GO:0090302|GO:1904822 molecular_function owl:Class GO:0016262 biolink:NamedThing protein N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + protein = UDP + 4-N-(N-acetyl-D-glucosaminyl)-protein. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-protein acetylglucosaminyltransferase activity|uridine diphospho-N-acetylglucosamine:polypeptide beta-N-acetylglucosaminyltransferase activity|N-GlcNAc transferase activity|UDP-N-acetyl-D-glucosamine:protein beta-N-acetyl-D-glucosaminyl-transferase activity RHEA:16533|EC:2.4.1.94|MetaCyc:2.4.1.94-RXN GO:0016253 molecular_function owl:Class GO:0047060 biolink:NamedThing (R)-pantolactone dehydrogenase (flavin) activity Catalysis of the reaction: (R)-pantolactone + A = 2-dehydropantolactone + AH(2). tmpzr1t_l9r_go_relaxed.owl 2-dehydropantolactone reductase (flavin) activity|(R)-pantolactone:acceptor oxidoreductase (flavin-containing)|2-dehydropantoyl-lactone reductase (flavin) activity|(R)-pantoyllactone dehydrogenase (flavin) activity MetaCyc:1.1.99.27-RXN|RHEA:21004|KEGG_REACTION:R03156|EC:1.1.99.27 molecular_function owl:Class GO:0102937 biolink:NamedThing 16-alpha-hydroxygypsogenate-UDP-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 16-alpha-hydroxygypsogenate = 16-alpha-hydroxygypsogenate-28-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9014 molecular_function owl:Class GO:0106185 biolink:NamedThing histone H3-K37 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 37 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K37me|histone lysine H3 K37 methylation|histone H3 K37 methylation hjd 2019-04-24T14:36:23Z biological_process owl:Class GO:0050691 biolink:NamedThing regulation of defense response to virus by host Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism. tmpzr1t_l9r_go_relaxed.owl host regulation of antiviral response|regulation by host of antiviral response|regulation of antiviral response by host biological_process owl:Class GO:0050688 biolink:NamedThing regulation of defense response to virus Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. tmpzr1t_l9r_go_relaxed.owl regulation of antiviral response biological_process owl:Class GO:0140123 biolink:NamedThing negative regulation of Lewy body formation Any process that stops, prevents or reduces the frequency, rate or extent of Lewy body formation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14160 pg 2017-10-25T07:08:56Z biological_process owl:Class GO:0005826 biolink:NamedThing actomyosin contractile ring A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. In animal cells, the contractile ring is located at the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms at the mother-bud neck before mitosis. tmpzr1t_l9r_go_relaxed.owl constriction ring|CAR|actomyosin ring|cytokinetic ring|contractile actomyosin ring GO:0030480 cellular_component owl:Class GO:0070938 biolink:NamedThing contractile ring A cytoskeletal structure composed of filamentous protein that forms beneath the membrane of many cells or organelles, in the plane of cell or organelle division. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells or organelles. tmpzr1t_l9r_go_relaxed.owl cytokinetic ring|constriction ring mah 2009-09-22T02:41:32Z cellular_component owl:Class GO:0110091 biolink:NamedThing negative regulation of hippocampal neuron apoptotic process Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in hippocampal neurons. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-13T21:25:01Z biological_process owl:Class GO:0001530 biolink:NamedThing lipopolysaccharide binding Binding to a lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl LPS binding|endotoxin binding molecular_function owl:Class GO:1902570 biolink:NamedThing protein localization to nucleolus A process in which a protein is transported to, or maintained in, a location within a nucleolus. tmpzr1t_l9r_go_relaxed.owl protein localisation in nucleolus|protein localisation to nucleolus|protein localization in nucleolus mah 2013-12-10T16:25:28Z biological_process owl:Class GO:0010777 biolink:NamedThing meiotic mismatch repair involved in reciprocal meiotic recombination A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990081 biolink:NamedThing trimethylamine receptor activity Combining with the biogenic amine trimethylamine to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl sp 2013-04-30T10:57:07Z molecular_function owl:Class GO:0032680 biolink:NamedThing regulation of tumor necrosis factor production Any process that modulates the frequency, rate or extent of tumor necrosis factor production. tmpzr1t_l9r_go_relaxed.owl regulation of tumor necrosis factor biosynthetic process|regulation of cachectin production|regulation of TNF-alpha production|regulation of TNF production|regulation of tumor necrosis factor secretion|regulation of tumor necrosis factor-alpha production Note that this term refers only to the specific, original 'tumor necrosis factor' protein (TNF) and not other members of the tumor necrosis factor superfamily (those with the gene symbol root 'TNFSF'). sl 2015-07-09T19:50:02Z GO:0042534|GO:1904467 biological_process owl:Class GO:0140429 biolink:NamedThing positive regulation of mitotic sister chromatid biorientation Any process that activates or increases the frequency, rate or extent of mitotic sister chromatid biorientation, the mitotic cell cycle process in which sister chromatids establish stable, end-on attachments to the plus ends of microtubules emanating from opposite spindle poles, oriented such that separation can proceed. tmpzr1t_l9r_go_relaxed.owl repair of mitotic merotelic kinetochore attachment defects|repair of mitotic merotelic kinetochore attachment defect|repair of mitotic mono-orientation defect|correction of mono-orientation defects|repair of mitotic mono-orientation defects|correction of merotelic kinetochore attachment, mitotic|correction of syntelic kinetochore attachment, mitotic https://github.com/geneontology/go-ontology/issues/18815 jl 2015-01-05T16:54:39Z GO:0098783|GO:1990598 biological_process owl:Class GO:0140273 biolink:NamedThing repair of mitotic kinetochore microtubule attachment defect The mitotic cell cycle process where kinetochore microtubule attachment defects are corrected. tmpzr1t_l9r_go_relaxed.owl correction of mitotic kinetochore microtubule attachment defects|repair of mitotic kinetochore microtubule attachment defects pg 2018-10-01T11:29:24Z biological_process owl:Class GO:0046460 biolink:NamedThing neutral lipid biosynthetic process The chemical reactions and pathways resulting in the formation of neutral lipids, lipids only soluble in solvents of very low polarity. tmpzr1t_l9r_go_relaxed.owl neutral lipid biosynthesis|neutral lipid formation|neutral lipid anabolism|neutral lipid synthesis biological_process owl:Class GO:0052658 biolink:NamedThing inositol-1,4,5-trisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 1,4,5-trisphosphate + H2O = 1D-myo-inositol 1,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl 1D-myo-inositol-1,4,5-trisphosphate 5-phosphohydrolase activity|myo-inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol phosphate 5-phosphomonoesterase activity|inositol 1,4,5-trisphosphate phosphatase activity|InsP3 5-phosphatase activity|D-myo-inositol(1,4,5)-trisphosphate 5-phosphatase activity|type II inositol polyphosphate 5-phosphatase activity|5PTase activity|L-myo-inositol 1,4,5-trisphosphate-monoesterase activity|InsP(3) 5-phosphatase activity|inositol trisphosphate phosphomonoesterase activity|inositol triphosphate 5-phosphomonoesterase activity|inosine triphosphatase activity|D-myo-inositol 1,4,5-triphosphate 5-phosphatase activity|Ins(1,4,5)P3 5-phosphatase activity|D-myo-inositol 1,4,5-trisphosphate 5-phosphatase activity|type I inositol-polyphosphate phosphatase activity|inositol polyphosphate-5-phosphatase activity KEGG_REACTION:R03394|Reactome:R-HSA-1855174|Reactome:R-HSA-1855222|EC:3.1.3.56|MetaCyc:3.1.3.56-RXN|RHEA:19797 molecular_function owl:Class GO:1905631 biolink:NamedThing cellular response to glyceraldehyde Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glyceraldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-10-31T16:32:27Z biological_process owl:Class GO:1905630 biolink:NamedThing response to glyceraldehyde Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glyceraldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-10-31T16:32:19Z biological_process owl:Class GO:2000222 biolink:NamedThing positive regulation of pseudohyphal growth Any process that activates or increases the frequency, rate or extent of pseudohyphal growth. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-03T04:37:03Z biological_process owl:Class GO:0102498 biolink:NamedThing maltose glucosidase activity Catalysis of the reaction: H2O + maltose = 2 glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15910 molecular_function owl:Class GO:1901396 biolink:NamedThing negative regulation of transforming growth factor beta2 activation Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta2 activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of TGF-beta 2 activation|inhibition of TGFbeta 2 activation|downregulation of TGF-beta 2 activation|inhibition of TGFB2 activation|down regulation of TGF-beta 2 activation|down-regulation of TGFB2 activation|inhibition of TGF-beta 2 activation|inhibition of transforming growth factor beta2 activation|down regulation of TGFbeta 2 activation|negative regulation of TGFB2 activation|down regulation of transforming growth factor beta2 activation|down regulation of TGFB2 activation|downregulation of transforming growth factor beta2 activation|downregulation of TGFbeta 2 activation|down-regulation of TGF-beta 2 activation|downregulation of TGFB2 activation|down-regulation of TGFbeta 2 activation|down-regulation of transforming growth factor beta2 activation|negative regulation of TGFbeta 2 activation bf 2012-10-01T10:47:59Z biological_process owl:Class GO:0030413 biolink:NamedThing competence pheromone activity A small peptide excreted by a naturally transformable bacterium (e.g. Bacillus subtilis) that transmits a signal required for the establishment of competence. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005186 biolink:NamedThing pheromone activity The activity of binding to and activating specific cell surface receptors, thereby inducing behavioral, developmental, or physiological response(s) from a responding organism or cell. The substance may be released or retained on the cell surface. Pheromones may serve as a specific attractant, social communicator, or sexual stimulant. tmpzr1t_l9r_go_relaxed.owl Also consider annotating to 'receptor agonist activity ; GO:0048018'. molecular_function owl:Class GO:0033340 biolink:NamedThing pelvic fin development The process whose specific outcome is the progression of the pelvic fin over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060173 biolink:NamedThing limb development The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. Examples include legs, arms or some types of fin. tmpzr1t_l9r_go_relaxed.owl paired limb/fin development|limb bud development Wikipedia:Limb_development biological_process owl:Class GO:0036362 biolink:NamedThing ascus membrane A double layer of lipid molecules that surrounds an ascus, a capsule containing the sexual spores in some fungi. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-21T11:21:41Z cellular_component owl:Class GO:0034917 biolink:NamedThing 2-methylhex-2-enoyl-CoA hydratase activity Catalysis of the reaction: 2-methylhex-2-enoyl-CoA + H2O = 3-hydroxy-2-methylhexanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0929 molecular_function owl:Class GO:0097608 biolink:NamedThing transverse flagellum A motile cilium found in dinoflagellates. It coils around the cell and provides the forward thrust for motility. It is often contained in a furrow called the cingulum, and emerges from a flagellar pore located in the cingulum. tmpzr1t_l9r_go_relaxed.owl transverse cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. In this case community usage refers to 'flagellum' rather than 'cilium', hence the primary term name, but the cilium parentage is deliberate. pr 2014-06-09T11:14:37Z cellular_component owl:Class GO:0060894 biolink:NamedThing limb spinous cell fate specification The process in which a cell becomes capable of differentiating autonomously into a limb spinous cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:46:23Z biological_process owl:Class GO:0009957 biolink:NamedThing epidermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl hypodermal cell fate specification GO:0043356 biological_process owl:Class GO:0070559 biolink:NamedThing lysosomal multienzyme complex A protein complex found in the lysosome that contains beta-galactosidase, cathepsin A, alpha-neuraminidase and N-acetylgalactosamine-6-sulfate sulfatase, and is involved in glycosaminoglycan catabolism. tmpzr1t_l9r_go_relaxed.owl GALNS-lysosomal hydrolase 1.27 MDa complex cellular_component owl:Class GO:0014894 biolink:NamedThing response to denervation involved in regulation of muscle adaptation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a denervation stimulus. This process occurs as part of the regulation of muscle adaptation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090724 biolink:NamedThing central region of growth cone The center of the migrating motile tip of a growing nerve cell axon or dendrite. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-18T12:44:25Z cellular_component owl:Class GO:0018890 biolink:NamedThing cyanamide metabolic process The chemical reactions and pathways involving cyanamide, NCNH2, a cyanide compound which has been used as a fertilizer, defoliant and in many manufacturing processes. It often occurs as the calcium salt, sometimes also referred to as cyanamide. The citrated calcium salt is used in the treatment of alcoholism. tmpzr1t_l9r_go_relaxed.owl cyanamide metabolism UM-BBD_pathwayID:cnm biological_process owl:Class GO:0034791 biolink:NamedThing isobutylamine N-hydroxylase activity Catalysis of the reaction: isobutylamine + NADPH + O2 = isobutylhydroxylamine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1053|EC:1.14.13.- molecular_function owl:Class GO:2000819 biolink:NamedThing regulation of nucleotide-excision repair Any process that modulates the frequency, rate or extent of nucleotide-excision repair. tmpzr1t_l9r_go_relaxed.owl regulation of pyrimidine-dimer repair, DNA damage excision|regulation of intrastrand cross-link repair|regulation of NER|regulation of interstrand crosslink repair pr 2011-07-13T08:55:39Z biological_process owl:Class GO:0071750 biolink:NamedThing dimeric IgA immunoglobulin complex A protein complex composed of two monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through a disulfide binded monomer of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl dimeric IgA antibody|dimeric IgA1 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Dimeric IgA is by far the most common form of polymeric IgA. In human only the IgA1 isotype is capable of a dimeric form. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0001797 biolink:NamedThing negative regulation of type IIa hypersensitivity Any process that stops, prevents, or reduces the rate of type IIa hypersensitivity, a type of inflammatory response. tmpzr1t_l9r_go_relaxed.owl downregulation of type IIa hypersensitivity|down-regulation of type IIa hypersensitivity|inhibition of type IIa hypersensitivity|down regulation of type IIa hypersensitivity biological_process owl:Class GO:0032908 biolink:NamedThing regulation of transforming growth factor beta1 production Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta1. tmpzr1t_l9r_go_relaxed.owl regulation of TGFB1 production|regulation of transforming growth factor-beta1 production|regulation of TGF-B1 production biological_process owl:Class GO:1905411 biolink:NamedThing positive regulation of mitotic cohesin unloading Any process that activates or increases the frequency, rate or extent of mitotic cohesin unloading. tmpzr1t_l9r_go_relaxed.owl vw 2016-08-25T15:45:30Z biological_process owl:Class GO:1905779 biolink:NamedThing positive regulation of exonuclease activity Any process that activates or increases the frequency, rate or extent of exonuclease activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of exonuclease activity|up regulation of exonuclease IX activity|positive regulation of exonuclease IX activity|up-regulation of exonuclease IX activity|activation of exonuclease IX activity|up regulation of exonuclease activity|activation of exonuclease activity|upregulation of exonuclease activity|upregulation of exonuclease IX activity nc 2016-12-21T21:32:24Z biological_process owl:Class GO:0005004 biolink:NamedThing GPI-linked ephrin receptor activity Combining with a GPI-anchored ephrin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl GPI-linked Eph receptor activity molecular_function owl:Class GO:0045692 biolink:NamedThing negative regulation of embryo sac central cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of embryo sac central cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of female gametophyte central cell differentiation|down-regulation of female gametophyte central cell differentiation|inhibition of female gametophyte central cell differentiation|downregulation of female gametophyte central cell differentiation|down regulation of female gametophyte central cell differentiation biological_process owl:Class GO:0045691 biolink:NamedThing regulation of embryo sac central cell differentiation Any process that modulates the frequency, rate or extent of female gametophyte central cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of female gametophyte central cell differentiation biological_process owl:Class GO:1903100 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process The chemical reactions and pathways involving 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolism bhm 2014-06-04T14:14:24Z biological_process owl:Class GO:1901235 biolink:NamedThing (R)-carnitine transmembrane transporter activity Enables the transfer of (R)-carnitine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl RHEA:34959 jl 2012-08-07T14:46:17Z molecular_function owl:Class GO:1900948 biolink:NamedThing negative regulation of isoprene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of isoprene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of 2-methyl-1,3-butadiene biosynthesis|down-regulation of 2-methyl-1,3-butadiene biosynthetic process|inhibition of hemiterpene biosynthetic process|inhibition of 2-methyl-1,3-butadiene biosynthesis|inhibition of 2-methyl-1,3-butadiene biosynthetic process|down regulation of hemiterpene biosynthetic process|down regulation of 2-methyl-1,3-butadiene biosynthetic process|negative regulation of hemiterpene biosynthetic process|negative regulation of 2-methyl-1,3-butadiene biosynthetic process|negative regulation of 2-methyl-1,3-butadiene biosynthesis|downregulation of hemiterpene biosynthesis|inhibition of hemiterpene biosynthesis|down regulation of hemiterpene biosynthesis|downregulation of isoprene biosynthetic process|negative regulation of hemiterpene biosynthesis|down regulation of 2-methyl-1,3-butadiene biosynthesis|downregulation of 2-methyl-1,3-butadiene biosynthetic process|down-regulation of 2-methyl-1,3-butadiene biosynthesis|down-regulation of hemiterpene biosynthetic process|downregulation of hemiterpene biosynthetic process|down-regulation of hemiterpene biosynthesis|down-regulation of isoprene biosynthetic process|inhibition of isoprene biosynthetic process|down regulation of isoprene biosynthetic process tt 2012-06-14T03:21:47Z biological_process owl:Class GO:0003408 biolink:NamedThing optic cup formation involved in camera-type eye development The developmental process pertaining to the initial formation of the optic cup, a two-walled vesicle formed from the optic vesicle. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T02:37:12Z biological_process owl:Class GO:0032419 biolink:NamedThing extrinsic component of lysosome membrane The component of an lysosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to lysosome membrane|extrinsic to lysosomal membrane cellular_component owl:Class GO:0000306 biolink:NamedThing extrinsic component of vacuolar membrane The component of a vacuolar membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to vacuolar membrane cellular_component owl:Class GO:1900370 biolink:NamedThing positive regulation of RNA interference Any process that activates or increases the frequency, rate or extent of RNA interference. tmpzr1t_l9r_go_relaxed.owl activation of posttranscriptional gene silencing by siRNA|upregulation of RNAi|upregulation of RNA interference|up-regulation of RNA interference|up regulation of RNA interference|up-regulation of RNAi|positive regulation of RNAi|activation of RNAi|positive regulation of posttranscriptional gene silencing by siRNA|upregulation of posttranscriptional gene silencing by siRNA|up regulation of posttranscriptional gene silencing by siRNA|activation of RNA interference|up regulation of RNAi|up-regulation of posttranscriptional gene silencing by siRNA kmv 2012-04-13T08:29:00Z biological_process owl:Class GO:1903655 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain serine 2 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter Any phosphorylation of RNA polymerase II C-terminal domain serine 2 residues that is involved in positive regulation of transcription elongation from RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-25T11:04:16Z biological_process owl:Class GO:1905762 biolink:NamedThing CCR4-NOT complex binding Binding to a CCR4-NOT complex. tmpzr1t_l9r_go_relaxed.owl mah 2016-12-15T15:48:53Z molecular_function owl:Class GO:0050260 biolink:NamedThing ribose-5-phosphate-ammonia ligase activity Catalysis of the reaction: D-ribose 5-phosphate + ATP + NH(4)(+) = 5-phospho-D-ribosylamine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl ammonia-ribose 5-phosphate aminotransferase activity|ribose-5-phosphate:ammonia ligase (ADP-forming)|5-phosphoribosylamine synthetase activity|ribose 5-phosphate aminotransferase activity EC:6.3.4.7|MetaCyc:RIBOSE-5-PHOSPHATE--AMMONIA-LIGASE-RXN|KEGG_REACTION:R01053|RHEA:13777 molecular_function owl:Class GO:0050990 biolink:NamedThing N-terminal protein amino acid carbamoylation The carbamoylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl N-terminal protein amino acid carbamylation biological_process owl:Class GO:0046469 biolink:NamedThing platelet activating factor metabolic process The chemical reactions and pathways involving platelet activating factor, 1-O-alkyl-2-acetyl-sn-glycerol 3-phosphocholine, where alkyl = hexadecyl or octadecyl. Platelet activating factor is an inflammatory mediator released from a variety of cells in response to various stimuli. tmpzr1t_l9r_go_relaxed.owl PAF metabolism|PAF metabolic process|platelet activating factor metabolism biological_process owl:Class GO:1902483 biolink:NamedThing cytotoxic T cell pyroptotic process Any pyroptotic process in a cytotoxic T cell. tmpzr1t_l9r_go_relaxed.owl cytotoxic T-cell apoptotic process|cytotoxic T cell apoptosis|cytotoxic T-lymphocyte apoptosis|cytotoxic T lymphocyte apoptotic process|cytotoxic T-lymphocyte apoptotic process|cytotoxic T-cell apoptosis|cytotoxic T cell apoptotic process|cytotoxic T lymphocyte apoptosis nhn 2013-11-04T17:23:48Z biological_process owl:Class GO:0070269 biolink:NamedThing pyroptosis A caspase-1-dependent cell death subroutine that is associated with the generation of pyrogenic mediators such as IL-1beta and IL-18. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048781 biolink:NamedThing regulation of cyanophore differentiation Any process that modulates the frequency, rate or extent of cyanophore differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120110 biolink:NamedThing interphase mitotic telomere clustering The process whereby the mitotic telomeres are gathered together during, or prior to, attachment to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl mitotic telomere clustering during interphase It is likely that both intra chromosome telomere clustering and inter-chromosome occur because a single focus is sometimes observed, although this has yet to be proven. krc 2017-11-01T18:09:08Z biological_process owl:Class GO:0002148 biolink:NamedThing hypochlorous acid metabolic process The chemical reactions and pathways involving hypochlorous acid. tmpzr1t_l9r_go_relaxed.owl HOCl metabolic process|HClO metabolic process|hypochlorite metabolic process|hypochlorous acid metabolism hjd 2009-10-13T10:27:48Z biological_process owl:Class GO:0045571 biolink:NamedThing negative regulation of imaginal disc growth Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc growth. tmpzr1t_l9r_go_relaxed.owl downregulation of imaginal disc growth|down-regulation of imaginal disc growth|down regulation of imaginal disc growth|inhibition of imaginal disc growth biological_process owl:Class GO:0030200 biolink:NamedThing heparan sulfate proteoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of proteoglycan containing heparan sulfate, any member of a group of glycosaminoglycans that have repeat units consisting of alternating alpha-(1->4) linked hexuronic acid and glucosamine residues, the former being a mixture of sulfated and nonsulfated D-glucuronic and L-iduronic acids, and the latter being either sulfated or acetylated on its amino group as well as sulfated on one of its hydroxyl groups. tmpzr1t_l9r_go_relaxed.owl heparin proteoglycan catabolic process|heparan sulfate proteoglycan degradation|heparan sulphate proteoglycan catabolic process|heparan sulphate proteoglycan catabolism|heparan sulfate proteoglycan breakdown|heparan sulfate proteoglycan catabolism biological_process owl:Class GO:0008830 biolink:NamedThing dTDP-4-dehydrorhamnose 3,5-epimerase activity Catalysis of the reaction: dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-L-mannose. tmpzr1t_l9r_go_relaxed.owl TDP-4-ketorhamnose 3,5-epimerase activity|TDP-4-keto-L-rhamnose-3,5-epimerase activity|dTDP-4-dehydro-6-deoxy-D-glucose 3,5-epimerase activity|dTDP-4-keto-6-deoxyglucose 3,5-epimerase activity|thymidine diphospho-4-ketorhamnose 3,5-epimerase activity MetaCyc:DTDPDEHYDRHAMEPIM-RXN|RHEA:16969|EC:5.1.3.13|KEGG_REACTION:R06514 molecular_function owl:Class GO:0001969 biolink:NamedThing regulation of activation of membrane attack complex Any process that modulates the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade. tmpzr1t_l9r_go_relaxed.owl regulation of activation of the terminal complement cascade|regulation of MAC formation|regulation of membrane attack complex assembly|regulation of activation of MAC|regulation of MAC assembly|regulation of membrane attack complex formation|regulation of activation of terminal complement complex|regulation of activation of TCC biological_process owl:Class GO:0102689 biolink:NamedThing UDP-glucose:isopentenyladenine 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + N(6)-dimethylallyladenine <=> H+ + 7-(alpha-D-glucosyl)-N(6)-isopentenyladenine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4727 molecular_function owl:Class GO:0102825 biolink:NamedThing quercetin 3-O-rhamnoside-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose(2-) + quercetin 3-O-rhamnoside <=> quercetin 3-O-rhamnoside-7-O-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8268 molecular_function owl:Class GO:0045252 biolink:NamedThing oxoglutarate dehydrogenase complex A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide S-succinyltransferase complex See also the molecular functions term 'oxoglutarate dehydrogenase (succinyl-transferring) activity ; GO:0004591', 'dihydrolipoyllysine-residue succinyltransferase activity ; GO:0004149' and 'dihydrolipoyl dehydrogenase activity ; GO:0004148'. cellular_component owl:Class GO:2000428 biolink:NamedThing regulation of neutrophil aggregation Any process that modulates the frequency, rate or extent of neutrophil aggregation. tmpzr1t_l9r_go_relaxed.owl regulation of neutrocyte aggregation|regulation of neutrophil leucocyte aggregation|regulation of neutrophilic leukocyte aggregation ebc 2011-02-28T05:18:54Z biological_process owl:Class GO:0018923 biolink:NamedThing limonene metabolic process The chemical reactions and pathways involving limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene. tmpzr1t_l9r_go_relaxed.owl limonene metabolism UM-BBD_pathwayID:lim biological_process owl:Class GO:0018322 biolink:NamedThing protein tyrosinylation The addition of a tyrosine molecule to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid tyrosinylation biological_process owl:Class GO:0090454 biolink:NamedThing glutamate transmembrane import into vacuole The directed movement of glutamate into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar glutamate import tb 2012-09-24T14:12:46Z biological_process owl:Class GO:0061766 biolink:NamedThing positive regulation of lung blood pressure The process that increases the force with which blood travels through the lungs. tmpzr1t_l9r_go_relaxed.owl positive regulation of pulmonary blood pressure dph 2016-04-27T11:54:34Z biological_process owl:Class GO:0120094 biolink:NamedThing negative regulation of peptidyl-lysine crotonylation Any process that stops or reduces the rate of crotonylation of a lysine residue in a protein. tmpzr1t_l9r_go_relaxed.owl krc 2017-08-22T20:36:36Z biological_process owl:Class GO:0043653 biolink:NamedThing mitochondrial fragmentation involved in apoptotic process The change in the morphology of the mitochondria in an apoptotic cell from a highly branched network to a fragmented vesicular form. tmpzr1t_l9r_go_relaxed.owl mitochondrial fission during apoptosis|mitochondrial fragmentation involved in apoptosis Although most of the processes described under 'apoptotic mitochondrial changes' take place during the signaling phase of apoptosis, 'mitochondrial fragmentation involved in apoptotic process' cannot be confidently placed there. It is still controversial whether this process is involved in the signaling phase of apoptosis or not, so it was placed under the more generic 'apoptotic mitochondrial changes' parent rather than linked to the signaling or the execution phase until further research clarifies the matter. biological_process owl:Class GO:0008637 biolink:NamedThing apoptotic mitochondrial changes The morphological and physiological alterations undergone by mitochondria during apoptosis. tmpzr1t_l9r_go_relaxed.owl This term was created to reflect the fundamental role of the mitochondrial compartment in apoptosis. Most processes under this node occur during the signaling phase of apoptosis, but e.g. GO:0043653 'mitochondrial fragmentation involved in apoptotic process' cannot be confidently placed under the signaling phase. For this reason, the parent term GO:0008637 'apoptotic mitochondrial changes' is not linked to the signaling or execution phase specifically, but its descendants are when current knowledge allows for it. biological_process owl:Class GO:1903691 biolink:NamedThing positive regulation of wound healing, spreading of epidermal cells Any process that activates or increases the frequency, rate or extent of wound healing, spreading of epidermal cells. tmpzr1t_l9r_go_relaxed.owl activation of wound healing, spreading of epidermal cells|up regulation of wound healing, spreading of epidermal cells|up-regulation of wound healing, spreading of epidermal cells|upregulation of wound healing, spreading of epidermal cells als 2014-12-01T15:54:35Z biological_process owl:Class GO:1903467 biolink:NamedThing negative regulation of mitotic DNA replication initiation Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication initiation involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA replication initiation involved in mitotic DNA replication|downregulation of DNA replication initiation involved in mitotic cell cycle DNA replication|inhibition of DNA replication initiation involved in mitotic DNA replication|downregulation of DNA replication initiation involved in mitotic DNA replication|down regulation of DNA replication initiation involved in mitotic cell cycle DNA replication|negative regulation of DNA replication initiation involved in mitotic cell cycle DNA replication|down-regulation of DNA replication initiation involved in mitotic cell cycle DNA replication|inhibition of DNA replication initiation involved in mitotic cell cycle DNA replication|down-regulation of DNA replication initiation involved in mitotic DNA replication vw 2014-09-23T13:38:58Z biological_process owl:Class GO:0010023 biolink:NamedThing proanthocyanidin biosynthetic process The chemical reactions and pathways resulting in the formation of proanthocyanidin. tmpzr1t_l9r_go_relaxed.owl proanthocyanidin formation|proanthocyanidin biosynthesis|proanthocyanidin anabolism|proanthocyanidin synthesis MetaCyc:PWY-641 biological_process owl:Class GO:0008832 biolink:NamedThing dGTPase activity Catalysis of the reaction: dGTP + H(2)O = 2'-deoxyguanosine + 2 H(+) + triphosphate. tmpzr1t_l9r_go_relaxed.owl deoxyguanosine triphosphatase activity|deoxyguanosine triphosphate triphosphohydrolase activity|deoxyguanosinetriphosphate triphosphohydrolase activity|deoxy-GTPase activity|dGTP triphosphohydrolase activity|deoxyguanosine 5-triphosphate triphosphohydrolase activity EC:3.1.5.1|KEGG_REACTION:R01856|MetaCyc:DGTPTRIPHYDRO-RXN|RHEA:15193 molecular_function owl:Class GO:0016793 biolink:NamedThing triphosphoric monoester hydrolase activity Catalysis of the hydrolysis of a triphosphoester to give a triphosphate group and a free hydroxyl group. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8866601|EC:3.1.5.- molecular_function owl:Class GO:0060338 biolink:NamedThing regulation of type I interferon-mediated signaling pathway Any process that modulates the rate, frequency or extent of a type I interferon-mediated signaling pathway. A type I interferon-mediated signaling pathway is the series of molecular events generated as a consequence of a type I interferon binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of type I interferon-mediated signalling pathway biological_process owl:Class GO:0007442 biolink:NamedThing hindgut morphogenesis The process in which the anatomical structures of the hindgut are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009745 biolink:NamedThing sucrose mediated signaling A series of molecular signals mediated by the detection of sucrose. tmpzr1t_l9r_go_relaxed.owl sucrose mediated signalling biological_process owl:Class GO:0060510 biolink:NamedThing type II pneumocyte differentiation The process in which a relatively unspecialized cell acquires specialized features of a type II pneumocyte. A type II pneumocyte is a surfactant secreting cell that contains abundant cytoplasm containing numerous lipid-rich multilamellar bodies. tmpzr1t_l9r_go_relaxed.owl granular pneumocyte differentiation|large alveolar cell differentiation|great alveolar cell differentiation biological_process owl:Class GO:0061140 biolink:NamedThing lung secretory cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a lung secretory cell. A lung secretory cell is a specialized epithelial cell of the lung that contains large secretory granules in its apical part. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T09:28:53Z biological_process owl:Class GO:0102047 biolink:NamedThing indole-3-acetyl-glycine synthetase activity Catalysis of the reaction: indole-3-acetate + glycine + ATP(4-) <=> H+ + indole-3-acetyl-glycine + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10429 molecular_function owl:Class GO:1901530 biolink:NamedThing response to hypochlorite Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hypochlorite stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-24T07:12:21Z biological_process owl:Class GO:0043078 biolink:NamedThing polar nucleus Either of two nuclei located centrally in a flowering plant embryo sac that eventually fuse to form the endosperm nucleus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098830 biolink:NamedThing presynaptic endosome An endosome present in the presynapse that fuses with endocytic vesicles arising in the presynaptic endocytic zone. This organelle is believed to be involved in regeneration of synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl As of 2015, there is still controversy over the nature of presynaptic endosomes and their relationship to regular endosomes. See Jahne et al., 2015 (PMID:25939282) for details. cellular_component owl:Class GO:0006420 biolink:NamedThing arginyl-tRNA aminoacylation The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. The arginyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of an alanine accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071726 biolink:NamedThing cellular response to diacyl bacterial lipopeptide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diacylated bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to diacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. mah 2010-03-17T02:17:02Z biological_process owl:Class GO:0102600 biolink:NamedThing cytochrome P450 dependent 12,13beta-epoxy-beta-amyrin hydroxylase activity Catalysis of the reaction: 12,13beta-epoxy-beta-amyrin + O2 + H+ + NAD(P)H <=> 12,13beta-epoxy-16beta-hydroxy-beta-amyrin + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15384 molecular_function owl:Class GO:1903837 biolink:NamedThing regulation of mRNA 3'-UTR binding Any process that modulates the frequency, rate or extent of mRNA 3'-UTR binding. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA 3' UTR binding als 2015-01-22T11:53:59Z biological_process owl:Class GO:1990429 biolink:NamedThing peroxisomal importomer complex A protein complex responsible for transporting proteins into the peroxisomal matrix. An example of this complex is Pex14 found in S. cerevisae which has 9 core components and 12 transient interaction partners. tmpzr1t_l9r_go_relaxed.owl peroxisomal import pore|Pex17p-Pex14p docking complex|Pex14 complex|peroxisomal protein import machinery https://github.com/geneontology/go-ontology/issues/22100 jl 2014-07-29T14:45:28Z GO:1990415 cellular_component owl:Class GO:0033823 biolink:NamedThing procollagen glucosyltransferase activity Catalysis of the reaction: UDP-glucose + 5-(D-galactosyloxy)-L-lysine-procollagen = UDP + 1,2-D-glucosyl-5-D-(galactosyloxy)-L-lysine-procollagen. tmpzr1t_l9r_go_relaxed.owl galactosylhydroxylysine glucosyltransferase activity|UDP-glucose-collagenglucosyltransferase activity|UDP-glucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase activity|UDPglucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase activity|uridine diphosphoglucose-collagen glucosyltransferase activity|collagen glucosyltransferase activity|collagen hydroxylysyl glucosyltransferase activity|galactosylhydroxylysine-glucosyltransferase activity|galactosylhydroxylysyl glucosyltransferase activity MetaCyc:PROCOLLAGEN-GLUCOSYLTRANSFERASE-RXN|RHEA:12576|Reactome:R-HSA-1981157|EC:2.4.1.66 molecular_function owl:Class GO:0047315 biolink:NamedThing kynurenine-glyoxylate transaminase activity Catalysis of the reaction: L-kynurenine + glyoxylate = 4-(2-aminophenyl)-2,4-dioxobutanoate + glycine. tmpzr1t_l9r_go_relaxed.owl kynurenine-glyoxylate aminotransferase activity|kynurenine--glyoxylate aminotransferase activity|L-kynurenine:glyoxylate aminotransferase (cyclizing) MetaCyc:2.6.1.63-RXN|RHEA:19249|EC:2.6.1.63|KEGG_REACTION:R01957 molecular_function owl:Class GO:0051065 biolink:NamedThing CTP reductase activity Catalysis of the reaction: dCTP + thioredoxin disulfide + H2O = CTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl CTP reduction EC:1.17.4.- molecular_function owl:Class GO:0008998 biolink:NamedThing ribonucleoside-triphosphate reductase activity Catalysis of the reaction: 2'-deoxyribonucleoside triphosphate + thioredoxin disulfide + H2O = ribonucleoside triphosphate + thioredoxin. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyribonucleoside-triphosphate:thioredoxin-disulfide 2'-oxidoreductase activity|2'-deoxyribonucleoside-triphosphate:oxidized-thioredoxin 2'-oxidoreductase activity|ribonucleotide reductase activity MetaCyc:1.17.4.2-RXN|RHEA:12701|EC:1.17.4.2 molecular_function owl:Class GO:0005402 biolink:NamedThing carbohydrate:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + cation(out) = sugar(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl cation:sugar symporter activity|cation/sugar symporter activity|sugar:cation symporter activity molecular_function owl:Class GO:0003065 biolink:NamedThing positive regulation of heart rate by epinephrine The process in which the secretion of epinephrine into the bloodstream or released from nerve endings increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl adrenaline cardiac chronotropy|adrenaline regulation of the rate of heart muscle contraction|epinephrine cardiac chronotropy|positive regulation of heart contraction rate by epinephrine|positive regulation of heart rate by adrenaline biological_process owl:Class GO:0140037 biolink:NamedThing sumo-dependent protein binding Binding to a protein upon sumoylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require sumoylation of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of sumoylation. It may be that the sumoylation causes a conformational change that allows binding of the protein to another region; this type of sumoylation-dependent protein binding is valid for annotation to this term. pg 2017-05-18T06:29:27Z molecular_function owl:Class GO:0140035 biolink:NamedThing ubiquitination-like modification-dependent protein binding Binding to a protein upon modification by a ubiquitin-like protein of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require a ubiquitin-like modification in the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of ubiquitin-like modification. It may be that the modification causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term. pg 2017-05-18T06:11:27Z molecular_function owl:Class GO:1901411 biolink:NamedThing negative regulation of tetrapyrrole biosynthetic process from glutamate Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole biosynthetic process from glutamate. tmpzr1t_l9r_go_relaxed.owl down-regulation of tetrapyrrole biosynthetic process from glutamate|down-regulation of tetrapyrrole anabolism from glutamate|down regulation of tetrapyrrole formation from glutamate|down-regulation of tetrapyrrole synthesis from glutamate|inhibition of tetrapyrrole formation from glutamate|down regulation of tetrapyrrole anabolism from glutamate|down-regulation of tetrapyrrole biosynthesis from glutamate|inhibition of tetrapyrrole biosynthesis from glutamate|downregulation of tetrapyrrole formation from glutamate|down-regulation of tetrapyrrole formation from glutamate|inhibition of tetrapyrrole anabolism from glutamate|negative regulation of tetrapyrrole formation from glutamate|negative regulation of tetrapyrrole synthesis from glutamate|down regulation of tetrapyrrole biosynthetic process from glutamate|inhibition of tetrapyrrole synthesis from glutamate|inhibition of tetrapyrrole biosynthetic process from glutamate|negative regulation of tetrapyrrole biosynthesis from glutamate|downregulation of tetrapyrrole anabolism from glutamate|downregulation of tetrapyrrole synthesis from glutamate|downregulation of tetrapyrrole biosynthesis from glutamate|downregulation of tetrapyrrole biosynthetic process from glutamate|down regulation of tetrapyrrole synthesis from glutamate|negative regulation of tetrapyrrole anabolism from glutamate|down regulation of tetrapyrrole biosynthesis from glutamate tt 2012-10-01T16:22:03Z biological_process owl:Class GO:0097328 biolink:NamedThing response to carboplatin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carboplatin stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:50:34Z biological_process owl:Class GO:1904144 biolink:NamedThing phosphatidylinositol phosphate phosphatase complex A protein complex which is capable of phosphatidylinositol phosphate phosphatase activity. tmpzr1t_l9r_go_relaxed.owl prostatic acid phosphatase complex An example of this is ACPP in human (P15309) in PMID:12525165 (inferred from physical interaction). bhm 2015-04-14T11:22:53Z cellular_component owl:Class GO:0036073 biolink:NamedThing perichondral ossification Intramembranous ossification from the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-19T01:49:38Z biological_process owl:Class GO:0001957 biolink:NamedThing intramembranous ossification Direct ossification that occurs within mesenchyme or an accumulation of relatively unspecialized cells. tmpzr1t_l9r_go_relaxed.owl dermal ossification|intramembranous bone ossification Wikipedia:Intramembranous_ossification An instance of intramembranous ossification may also be classified as metaplastic; the former classifies based on tissue type location, and the latter based on mechanism/cell division. biological_process owl:Class GO:0008714 biolink:NamedThing AMP nucleosidase activity Catalysis of the reaction: AMP + H(2)O = D-ribose 5-phosphate + adenine. tmpzr1t_l9r_go_relaxed.owl AMP phosphoribohydrolase activity|adenylate nucleosidase activity|adenosine monophosphate nucleosidase activity RHEA:20129|MetaCyc:AMP-NUCLEOSID-RXN|KEGG_REACTION:R00182|EC:3.2.2.4 molecular_function owl:Class GO:1903995 biolink:NamedThing regulation of non-membrane spanning protein tyrosine kinase activity Any process that modulates the frequency, rate or extent of non-membrane spanning protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of cytoplasmic protein tyrosine kinase activity|regulation of janus kinase 2 activity|regulation of Bruton's tyrosine kinase activity|regulation of ATP:protein-tyrosine O-phosphotransferase activity|regulation of p60c-src protein tyrosine kinase activity|regulation of janus kinase 3 activity|regulation of non-specific protein-tyrosine kinase activity|regulation of focal adhesion kinase activity|regulation of janus kinase 1 activity|regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity nc 2015-03-05T16:34:35Z biological_process owl:Class GO:0140157 biolink:NamedThing ammonium import across plasma membrane The directed movement of an ammonium ion from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-01-26T12:39:56Z biological_process owl:Class GO:0018495 biolink:NamedThing 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity Catalysis of the reaction: 2-hydroxycyclohexane-1-carboxyl-CoA = 2 H+ + 2 e- + 2-ketocyclohexane-1-carboxyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0192 molecular_function owl:Class GO:0034011 biolink:NamedThing L-cysteate sulfo-lyase activity Catalysis of the reaction: L-cysteate + H(2)O = NH(4)(+) + pyruvate + sulfite. tmpzr1t_l9r_go_relaxed.owl L-cysteate sulfo-lyase (deaminating) activity|CuyA|L-cysteate bisulfite-lyase (deaminating; pyruvate-forming) activity KEGG_REACTION:R07634|EC:4.4.1.25|MetaCyc:4.4.1.25-RXN|RHEA:13441 molecular_function owl:Class GO:2001227 biolink:NamedThing quercitrin binding Binding to quercitrin. tmpzr1t_l9r_go_relaxed.owl tb 2011-11-18T09:58:37Z molecular_function owl:Class GO:0043110 biolink:NamedThing rDNA spacer replication fork barrier binding Binding to replication fork barriers found in rDNA spacers, sites that inhibit replication forks in the direction opposite to rDNA transcription. tmpzr1t_l9r_go_relaxed.owl RFB binding molecular_function owl:Class GO:0018749 biolink:NamedThing (3,5-dichlorophenylurea)acetate amidohydrolase activity Catalysis of the reaction: (3,5-dichlorophenylurea)acetate + OH- = 3,5-dichloroaniline + N-carboxyglycine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0708 molecular_function owl:Class GO:0033086 biolink:NamedThing negative regulation of extrathymic T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of extrathymic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of extrathymic T cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015514 biolink:NamedThing nitrite efflux transmembrane transporter activity Enables the transfer of nitrite from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl nitrite extrusion permease activity molecular_function owl:Class GO:1905790 biolink:NamedThing regulation of mechanosensory behavior Any process that modulates the frequency, rate or extent of mechanosensory behavior. tmpzr1t_l9r_go_relaxed.owl regulation of behavioural response to mechanical stimulus|regulation of behavioral response to mechanical stimulus|regulation of mechanosensory behaviour hbye 2017-01-09T15:17:07Z biological_process owl:Class GO:1990418 biolink:NamedThing response to insulin-like growth factor stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin-like growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2014-07-14T22:47:59Z biological_process owl:Class GO:0009249 biolink:NamedThing protein lipoylation The lipoylation of peptidyl-lysine to form peptidyl-N6-lipoyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl protein-lipoic acid cofactor linkage|peptidyl-lysine lipoylation GO:0018055 biological_process owl:Class GO:0106229 biolink:NamedThing histone glutaryltransferase activity Catalysis of the reaction: glutaryl-CoA + histone = CoA + H+ + N6-glutaryl-histone. tmpzr1t_l9r_go_relaxed.owl hjd 2019-10-17T19:01:48Z molecular_function owl:Class GO:0106228 biolink:NamedThing peptide glutaryltransferase activity Catalysis of the reaction: glutaryl-CoA + L-lysyl-[protein] = CoA + H+ + N6-glutaryl-L-lysyl-[protein]. tmpzr1t_l9r_go_relaxed.owl RHEA:18009 hjd 2019-10-17T18:58:56Z molecular_function owl:Class GO:1902437 biolink:NamedThing positive regulation of male mating behavior Any process that activates or increases the frequency, rate or extent of male mating behavior. tmpzr1t_l9r_go_relaxed.owl up regulation of male mating behavior|up-regulation of male mating behavior|activation of male mating behavior|upregulation of male mating behavior mm2 2013-10-09T15:50:14Z biological_process owl:Class GO:0033968 biolink:NamedThing glutaryl-7-aminocephalosporanic-acid acylase activity Catalysis of the reaction: (7R)-7-(4-carboxybutanamido)cephalosporanate + H2O = (7R)-7-aminocephalosporanate + glutarate. tmpzr1t_l9r_go_relaxed.owl CA|GA|(7R)-7-(4-carboxybutanamido)cephalosporanate amidohydrolase activity|glutaryl-7-ACA acylase activity|cephalosporin C acylase activity|7beta-(4-carboxybutanamido)cephalosporanic acid acylase activity|GL-7-ACA acylase activity|glutaryl-7-aminocephalosporanic acid acylase activity|cephalosporin acylase activity|GCA EC:3.5.1.93|MetaCyc:3.5.1.93-RXN|RHEA:23508 molecular_function owl:Class GO:0050555 biolink:NamedThing 2-hydroxypropyl-CoM lyase activity Catalysis of the reactions: (R)-2-hydroxypropyl-CoM = H-S-CoM + (R)-1,2-epoxypropane, and (S)-2-hydroxypropyl-CoM = H-S-CoM + (S)-1,2-epoxypropane. tmpzr1t_l9r_go_relaxed.owl 2-hydroxypropyl-CoM:2-mercaptoethanesulfonate lyase (epoxyalkane-ring-forming)|epoxyalkyl:CoM transferase activity|epoxypropane:coenzyme M transferase activity|(R)-[or (S)-]2-hydroxypropyl-CoM:2-mercaptoethanesulfonate lyase (epoxyalkane-ring-forming)|(R)-2-hydroxypropyl-CoM 2-mercaptoethanesulfonate lyase (cyclizing; epoxyalkane-ring-forming)|epoxypropyl:CoM transferase activity|epoxyalkane:CoM transferase activity|coenzyme M-epoxyalkane ligase activity|epoxyalkane:2-mercaptoethanesulfonate transferase activity|epoxyalkane:coenzyme M transferase activity|EaCoMT activity RHEA:19421|UM-BBD_enzymeID:e0538|MetaCyc:4.2.99.19-RXN|EC:4.4.1.23 molecular_function owl:Class GO:0009748 biolink:NamedThing hexokinase-independent signaling A series of molecular signals mediated by hexose and independent of hexokinase. tmpzr1t_l9r_go_relaxed.owl hexokinase-independent signalling biological_process owl:Class GO:1903367 biolink:NamedThing positive regulation of fear response Any process that activates or increases the frequency, rate or extent of fear response. tmpzr1t_l9r_go_relaxed.owl positive regulation of physiological fear response|up regulation of fear response|activation of fear response|up-regulation of physiological fear response|up-regulation of fear response|up regulation of physiological fear response|upregulation of fear response|upregulation of physiological fear response|activation of physiological fear response mr 2014-08-21T23:21:53Z biological_process owl:Class GO:1902824 biolink:NamedThing positive regulation of late endosome to lysosome transport Any process that activates or increases the frequency, rate or extent of late endosome to lysosome transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of late endosome to lysosome transport|up regulation of late endosome to lysosome transport|activation of late endosome to lysosome transport|upregulation of late endosome to lysosome transport pad 2014-03-31T10:08:57Z biological_process owl:Class GO:0002941 biolink:NamedThing synoviocyte proliferation The multiplication or reproduction of synoviocytes by cell division, resulting in the expansion of their population. A synoviocyte is a fibroblast-like cell found in synovial tissues. tmpzr1t_l9r_go_relaxed.owl hjd 2012-11-16T14:25:45Z biological_process owl:Class GO:1905169 biolink:NamedThing regulation of protein localization to phagocytic vesicle Any process that modulates the frequency, rate or extent of protein localization to phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to phagocytic vesicle|regulation of protein localization in phagocytic vesicle|regulation of protein localisation to phagosome|regulation of protein recruitment to phagosome|regulation of protein localisation in phagocytic vesicle bf 2016-05-02T18:38:13Z biological_process owl:Class GO:0042880 biolink:NamedThing D-glucuronate transmembrane transporter activity Enables the transfer of D-glucuronate, the D-enantiomer of glucuronate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060566 biolink:NamedThing positive regulation of DNA-templated transcription, termination Any process that increases the rate, frequency or extent of DNA-templated transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription termination, DNA-dependent|positive regulation of DNA-dependent transcription, termination|positive regulation of termination of DNA-dependent transcription dph 2009-04-29T02:54:50Z biological_process owl:Class GO:1902298 biolink:NamedThing cell cycle DNA replication maintenance of fidelity Any maintenance of fidelity that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl maintenance of fidelity involved in cell cycle DNA replication|maintenance of fidelity during DNA-dependent DNA replication involved in cell cycle DNA replication jl 2013-07-10T11:47:19Z biological_process owl:Class GO:1990736 biolink:NamedThing regulation of vascular associated smooth muscle cell membrane depolarization Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in a vascular smooth muscle cell. tmpzr1t_l9r_go_relaxed.owl regulation of vascular smooth muscle cell membrane depolarization sl 2015-04-29T22:33:19Z biological_process owl:Class GO:0046032 biolink:NamedThing ADP catabolic process The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl ADP catabolism|ADP breakdown|ADP degradation biological_process owl:Class GO:1904743 biolink:NamedThing negative regulation of telomeric DNA binding Any process that stops, prevents or reduces the frequency, rate or extent of telomeric DNA binding. tmpzr1t_l9r_go_relaxed.owl inhibition of telomeric DNA binding|down regulation of telomeric DNA binding|down regulation of telomere binding|down-regulation of telomeric DNA binding|down-regulation of telomere binding|downregulation of telomere binding|negative regulation of telomere binding|inhibition of telomeric repeat binding|inhibition of telomere binding|negative regulation of telomeric repeat binding|down-regulation of telomeric repeat binding|downregulation of telomeric DNA binding|downregulation of telomeric repeat binding|down regulation of telomeric repeat binding nc 2015-10-19T12:18:55Z biological_process owl:Class GO:0032064 biolink:NamedThing positive regulation of translational initiation in response to osmotic stress Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl stimulation of translation initiation in response to osmotic stress|upregulation of translation initiation in response to osmotic stress|activation of translation initiation in response to osmotic stress|up-regulation of translation initiation in response to osmotic stress|up regulation of translation initiation in response to osmotic stress biological_process owl:Class GO:0044867 biolink:NamedThing modulation by host of viral catalytic activity The process in which a host organism effects a change in the enzyme activity of a virus with which it is infected. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T11:29:25Z biological_process owl:Class GO:0044868 biolink:NamedThing modulation by host of viral molecular function A process in which a host organism modulates the frequency, rate or extent of any molecular function being mediated by a virus with which it is infected. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-18T13:34:27Z biological_process owl:Class GO:1901687 biolink:NamedThing glutathione derivative biosynthetic process The chemical reactions and pathways resulting in the formation of glutathione derivative. tmpzr1t_l9r_go_relaxed.owl glutathione derivative anabolism|glutathione derivative synthesis|glutathione derivative formation|glutathione derivative biosynthesis pr 2012-12-05T11:57:20Z biological_process owl:Class GO:0002463 biolink:NamedThing central tolerance induction to nonself antigen Tolerance induction to nonself antigens in the central lymphoid organs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030145 biolink:NamedThing manganese ion binding Binding to a manganese ion (Mn). tmpzr1t_l9r_go_relaxed.owl manganese binding|Mn binding molecular_function owl:Class GO:0036224 biolink:NamedThing pairing center A special chromosome region located towards one end of a chromosome that contains dispersed copies of short, repetitive DNA sequences and functions as a cis-acting element essential for presynaptic homologous chromosome pairing and chromosome-nuclear envelope attachment. tmpzr1t_l9r_go_relaxed.owl homolog recognition region bf 2012-05-09T02:28:53Z cellular_component owl:Class GO:1902755 biolink:NamedThing sulfurated eukaryotic molybdenum cofactor(2-) metabolic process The chemical reactions and pathways involving sulfurated eukaryotic molybdenum cofactor(2-). tmpzr1t_l9r_go_relaxed.owl sulfurated eukaryotic molybdenum cofactor(2-) metabolism dph 2014-03-05T23:29:13Z biological_process owl:Class GO:0033901 biolink:NamedThing ribonuclease V activity Catalysis of the hydrolysis of poly(A), forming oligoribonucleotides and ultimately 3'-AMP. tmpzr1t_l9r_go_relaxed.owl endoribonuclease V activity EC:3.1.27.8|MetaCyc:3.1.27.8-RXN molecular_function owl:Class GO:1902787 biolink:NamedThing cellular response to dodecane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dodecane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T13:41:52Z biological_process owl:Class GO:1902786 biolink:NamedThing response to dodecane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dodecane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T13:41:36Z biological_process owl:Class GO:0017011 biolink:NamedThing protein-phycoerythrobilin linkage The linkage of the chromophore phycoerythrobilin to phycoerythrins. tmpzr1t_l9r_go_relaxed.owl RESID:AA0132 biological_process owl:Class GO:0002410 biolink:NamedThing plasmacytoid dendritic cell chemotaxis The movement of a plasmacytoid dendritic cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070032 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, and complexin I (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (Vamp2, Snap25, Stx1a, Cplx1)|Vamp2-Snap25-Stx1a-Cplx1 complex cellular_component owl:Class GO:0001014 biolink:NamedThing snoRNA transcription by RNA polymerase III The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase III, originating at a type 2 RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl snoRNA transcription from a type 2 RNA polymerase III promoter krc 2010-08-18T07:13:45Z biological_process owl:Class GO:0050801 biolink:NamedThing ion homeostasis Any process involved in the maintenance of an internal steady state of ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl regulation of ion homeostasis|electrolyte homeostasis|negative regulation of crystal formation GO:2000021 biological_process owl:Class GO:0033795 biolink:NamedThing betaine reductase activity Catalysis of the reaction: acetyl phosphate + trimethylamine + thioredoxin disulfide = N,N,N-trimethylglycine + phosphate + thioredoxin. tmpzr1t_l9r_go_relaxed.owl acetyl-phosphate trimethylamine:thioredoxin disulfide oxidoreductase (N,N,N-trimethylglycine-forming) activity EC:1.21.4.4|RHEA:11848 molecular_function owl:Class GO:0080058 biolink:NamedThing protein deglutathionylation The protein modification process in which a glutathione molecule is removed from a protein amino acid by breaking a disulfide linkage. tmpzr1t_l9r_go_relaxed.owl protein amino acid deglutathionylation dhl 2009-04-13T02:48:06Z biological_process owl:Class GO:0050319 biolink:NamedThing tartrate decarboxylase activity Catalysis of the reaction: L-tartrate + H(+) = D-glycerate + CO(2). tmpzr1t_l9r_go_relaxed.owl (R,R)-tartrate carboxy-lyase (D-glycerate-forming)|(R,R)-tartrate carboxy-lyase activity KEGG_REACTION:R01751|RHEA:13317|MetaCyc:TARTRATE-DECARBOXYLASE-RXN|EC:4.1.1.73 molecular_function owl:Class GO:0006715 biolink:NamedThing farnesol biosynthetic process The chemical reactions and pathways resulting in the formation of the sesquiterpenoid alcohol farnesol, 3,7,11-trimethyl-2,6,10,dodecatrien-1-ol. tmpzr1t_l9r_go_relaxed.owl farnesol formation|farnesol anabolism|farnesol biosynthesis|farnesol synthesis biological_process owl:Class GO:1901470 biolink:NamedThing negative regulation of syringal lignin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of syringal lignin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of syringal lignin degradation|inhibition of syringal lignin catabolism|down-regulation of S-lignin catabolic process|negative regulation of syringal lignin catabolism|downregulation of syringal lignin degradation|down-regulation of syringal lignin catabolic process|down-regulation of syringal lignin degradation|inhibition of S-lignin catabolic process|down regulation of syringal lignin degradation|inhibition of syringal lignin catabolic process|down-regulation of syringal lignin breakdown|down-regulation of syringal lignin catabolism|downregulation of S-lignin catabolic process|down regulation of syringal lignin catabolism|downregulation of syringal lignin catabolic process|down regulation of syringal lignin catabolic process|down regulation of syringal lignin breakdown|inhibition of syringal lignin degradation|inhibition of syringal lignin breakdown|negative regulation of S-lignin catabolic process|negative regulation of syringal lignin breakdown|downregulation of syringal lignin breakdown|downregulation of syringal lignin catabolism|down regulation of S-lignin catabolic process tt 2012-10-02T14:42:21Z biological_process owl:Class GO:2000318 biolink:NamedThing positive regulation of T-helper 17 type immune response Any process that activates or increases the frequency, rate or extent of T-helper 17 type immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of Th17 immune response mah 2011-01-18T01:33:24Z biological_process owl:Class GO:1902987 biolink:NamedThing negative regulation of lysine biosynthetic process via aminoadipic acid Any process that stops, prevents or reduces the frequency, rate or extent of lysine biosynthetic process via aminoadipic acid. tmpzr1t_l9r_go_relaxed.owl downregulation of lysine biosynthesis, aminoadipic acid pathway|inhibition of lysine biosynthetic process via aminoadipic acid|down-regulation of lysine biosynthetic process via aminoadipic acid|negative regulation of lysine biosynthesis, aminoadipic acid pathway|negative regulation of lysine anabolism via aminoadipic acid|negative regulation of lysine biosynthetic process, aminoadipic pathway|down regulation of lysine anabolism via aminoadipic acid|inhibition of lysine biosynthesis, aminoadipic acid pathway|inhibition of lysine biosynthesis, aminoadipic pathway|downregulation of lysine formation via aminoadipic acid|down regulation of lysine biosynthesis, aminoadipic pathway|down regulation of lysine biosynthesis, aminoadipic acid pathway|down-regulation of lysine biosynthetic process, aminoadipic acid pathway|downregulation of lysine biosynthetic process, aminoadipic acid pathway|down-regulation of lysine formation via aminoadipic acid|down regulation of lysine formation via aminoadipic acid|down-regulation of lysine anabolism via aminoadipic acid|inhibition of lysine synthesis via aminoadipic acid|down-regulation of lysine biosynthetic process, aminoadipic pathway|downregulation of lysine anabolism via aminoadipic acid|downregulation of lysine synthesis via aminoadipic acid|negative regulation of lysine biosynthesis, aminoadipic pathway|down-regulation of lysine biosynthesis, aminoadipic acid pathway|inhibition of lysine biosynthetic process, aminoadipic acid pathway|inhibition of lysine biosynthetic process, aminoadipic pathway|negative regulation of lysine biosynthetic process, aminoadipic acid pathway|down regulation of lysine biosynthetic process, aminoadipic acid pathway|down-regulation of lysine synthesis via aminoadipic acid|downregulation of lysine biosynthesis, aminoadipic pathway|downregulation of lysine biosynthetic process via aminoadipic acid|negative regulation of lysine synthesis via aminoadipic acid|negative regulation of lysine formation via aminoadipic acid|downregulation of lysine biosynthetic process, aminoadipic pathway|inhibition of lysine formation via aminoadipic acid|down-regulation of lysine biosynthesis, aminoadipic pathway|down regulation of lysine biosynthetic process via aminoadipic acid|inhibition of lysine anabolism via aminoadipic acid|down regulation of lysine synthesis via aminoadipic acid|down regulation of lysine biosynthetic process, aminoadipic pathway al 2014-05-07T08:07:15Z biological_process owl:Class GO:0002952 biolink:NamedThing (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity Catalysis of the reaction (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione = 3-hydroxy-5-phosphonooxypentane-2,4-dione. tmpzr1t_l9r_go_relaxed.owl phospho-AI-2 isomerase activity molecular_function owl:Class GO:0051752 biolink:NamedThing phosphoglucan, water dikinase activity Catalysis of the reaction: ATP + [phospho-alpha-glucan] + H2O = AMP + O-phospho-[phospho-alpha-glucan] + phosphate. tmpzr1t_l9r_go_relaxed.owl OK1|PWD|ATP:phospho-alpha-glucan, water phosphotransferase activity EC:2.7.9.5|MetaCyc:2.7.9.5-RXN molecular_function owl:Class GO:0097234 biolink:NamedThing epidermal lamellar body membrane The lipid bilayer surrounding an epidermal lamellar body, a specialized secretory organelle found in keratinocytes and involved in the formation of an impermeable, lipid-containing membrane that serves as a water barrier and is required for correct skin barrier function. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-26T10:32:13Z cellular_component owl:Class GO:0097232 biolink:NamedThing lamellar body membrane The lipid bilayer surrounding a lamellar body. A lamellar body is a membrane-bounded organelle, specialized for the storage and secretion of various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-26T10:28:42Z cellular_component owl:Class GO:0102220 biolink:NamedThing hydrogenase activity (NAD+, ferredoxin) Catalysis of the reaction: 2 dihydrogen + NAD + 2 an oxidized ferredoxin = NADH + 3 H+ + 2 a reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl EC:1.12.1.4|RHEA:30279|MetaCyc:RXN-12215 molecular_function owl:Class GO:0140084 biolink:NamedThing sexual macrocyst formation The fusion of haploid amoebae cells with matching mating types to form a larger cell, which ingests additional amoebae and forms a cellulose wall. The resulting macrocyst undergoes recombination and meiosis followed by release of haploid amoebae. An example of this process can be found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl sexual fusion|macrocyst formation pg 2017-08-14T20:11:03Z biological_process owl:Class GO:0019953 biolink:NamedThing sexual reproduction A reproduction process that creates a new organism by combining the genetic material of two gametes, which may come from two organisms or from a single organism, in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two gametes join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sexual_reproduction Sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times. biological_process owl:Class GO:0071620 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain serine 5 residues The process of introducing a phosphate group onto a serine residue at position 5 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 5 (Ser5) occurs near the 5' ends of genes. It is generally still observed in the middle of genes, overlapping with phosphorylation of serine 2, but is generally not present at the 3' ends of genes. In vivo, Ser5 phosphorylation occurs primarily through the action of TFIIH (KIN28 in S. cerevisiae, CKD7 in metazoans). tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T02:39:52Z biological_process owl:Class GO:0033460 biolink:NamedThing GAG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GAG codon. tmpzr1t_l9r_go_relaxed.owl glutamic acid tRNA Note that in the standard genetic code, GAG codes for glutamic acid. molecular_function owl:Class GO:0035247 biolink:NamedThing peptidyl-arginine omega-N-methylation The addition of a methyl group onto a terminal nitrogen (omega nitrogen) atom of an arginine residue in a protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0068|RESID:AA0067|RESID:AA0069 biological_process owl:Class GO:0035246 biolink:NamedThing peptidyl-arginine N-methylation The addition of a methyl group onto a nitrogen atom of an arginine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900017 biolink:NamedThing positive regulation of cytokine production involved in inflammatory response Any process that activates or increases the frequency, rate or extent of cytokine production involved in inflammatory response. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytokine production involved in acute inflammatory response|up regulation of cytokine production involved in acute inflammatory response|up regulation of cytokine production involved in inflammatory response rph 2012-01-11T09:34:35Z biological_process owl:Class GO:0043160 biolink:NamedThing acrosomal lumen The volume enclosed within the acrosome membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043202 biolink:NamedThing lysosomal lumen The volume enclosed within the lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010955 biolink:NamedThing negative regulation of protein processing Any process that decreases the rate, frequency or extent of protein maturation by peptide bond cleavage. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein maturation by peptide bond cleavage tb 2009-04-27T12:10:19Z biological_process owl:Class GO:0010886 biolink:NamedThing positive regulation of cholesterol storage Any process that increases the rate or extent of cholesterol storage. Cholesterol storage is the accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl positive regulation of cholesterol sequestration biological_process owl:Class GO:0021940 biolink:NamedThing positive regulation of cerebellar granule cell precursor proliferation The process that activates or increases the rate or extent of granule cell precursor proliferation. tmpzr1t_l9r_go_relaxed.owl activation of granule cell precursor proliferation|stimulation of granule cell precursor proliferation|up regulation of granule cell precursor proliferation|upregulation of granule cell precursor proliferation|up-regulation of granule cell precursor proliferation biological_process owl:Class GO:0120198 biolink:NamedThing positive regulation of imaginal disc-derived wing size Any process that increases the size of an imaginal disc-derived wing. tmpzr1t_l9r_go_relaxed.owl krc 2019-04-30T21:47:06Z biological_process owl:Class GO:0071223 biolink:NamedThing cellular response to lipoteichoic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoteichoic acid stimulus; lipoteichoic acid is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl cellular response to LTA mah 2009-12-03T01:31:00Z biological_process owl:Class GO:1900957 biolink:NamedThing negative regulation of 17-methylnonadec-1-ene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of 17-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of 17-methylnonadec-1-ene biosynthetic process|down regulation of 17-methylnonadec-1-ene synthesis|inhibition of 17-methylnonadec-1-ene biosynthetic process|down regulation of 17-methylnonadec-1-ene anabolism|downregulation of 17-methylnonadec-1-ene formation|negative regulation of 17-methylnonadec-1-ene biosynthesis|inhibition of 17-methylnonadec-1-ene anabolism|down-regulation of 17-methylnonadec-1-ene anabolism|negative regulation of 17-methylnonadec-1-ene formation|inhibition of 17-methylnonadec-1-ene synthesis|down-regulation of 17-methylnonadec-1-ene synthesis|down-regulation of 17-methylnonadec-1-ene biosynthetic process|down-regulation of 17-methylnonadec-1-ene formation|inhibition of 17-methylnonadec-1-ene biosynthesis|downregulation of 17-methylnonadec-1-ene synthesis|down regulation of 17-methylnonadec-1-ene formation|down regulation of 17-methylnonadec-1-ene biosynthesis|negative regulation of 17-methylnonadec-1-ene anabolism|down regulation of 17-methylnonadec-1-ene biosynthetic process|negative regulation of 17-methylnonadec-1-ene synthesis|down-regulation of 17-methylnonadec-1-ene biosynthesis|downregulation of 17-methylnonadec-1-ene anabolism|inhibition of 17-methylnonadec-1-ene formation|downregulation of 17-methylnonadec-1-ene biosynthesis tt 2012-06-14T03:27:39Z biological_process owl:Class GO:0015128 biolink:NamedThing gluconate transmembrane transporter activity Enables the transfer of gluconate from one side of a membrane to the other. Gluconate is the aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate/D-gluconate:hydrogen symporter activity molecular_function owl:Class GO:0071768 biolink:NamedThing mycolic acid biosynthetic process The chemical reactions and pathways resulting in the formation of mycolic acids, beta-hydroxy fatty acids with a long alpha-alkyl side chain. tmpzr1t_l9r_go_relaxed.owl mycolic acid biosynthesis|mycolic acid synthesis|mycolic acid formation|mycolic acid anabolism|mycolate biosynthetic process MetaCyc:PWYG-321 mah 2010-03-29T04:36:10Z biological_process owl:Class GO:0071767 biolink:NamedThing mycolic acid metabolic process The chemical reactions and pathways involving mycolic acids, beta-hydroxy fatty acids with a long alpha-alkyl side chain. tmpzr1t_l9r_go_relaxed.owl mycolic acid metabolism|mycolate metabolic process mah 2010-03-29T04:33:31Z biological_process owl:Class GO:0090225 biolink:NamedThing regulation of spindle density Any process that modulates the number of microtubules in a given region of the spindle. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-13T11:24:53Z biological_process owl:Class GO:1903937 biolink:NamedThing response to acrylamide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acrylamide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-12T22:00:24Z biological_process owl:Class GO:0042763 biolink:NamedThing intracellular immature spore A cell or part of the cell that constitutes an early developmental stage of a spore, a small reproductive body that is highly resistant to desiccation and heat and is capable of growing into a new organism, produced especially by certain bacteria, fungi, algae, and nonflowering plants. tmpzr1t_l9r_go_relaxed.owl forespore cellular_component owl:Class GO:0046557 biolink:NamedThing glucan endo-1,6-beta-glucosidase activity Catalysis of the random hydrolysis of (1->6) linkages in (1->6)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl endo-1,6-beta-glucanase activity|endo-beta-1,6-glucanase activity|1,6-beta-D-glucan glucanohydrolase activity|beta-1,6-glucanase-pustulanase activity|beta-1,6-glucanase activity|beta-1,6-glucan 6-glucanohydrolase activity|endo-1,6-beta-D-glucanase activity|endo-(1,6)-beta-D-glucanase activity|beta-1,6-glucan hydrolase activity|beta-1->6-glucan hydrolase activity|endo-(1->6)-beta-D-glucanase activity MetaCyc:3.2.1.75-RXN|EC:3.2.1.75 molecular_function owl:Class GO:0070139 biolink:NamedThing SUMO-specific endopeptidase activity Catalysis of the hydrolysis of peptide bonds between an alpha-carboxyl group and an alpha-amino group within the small conjugating protein SUMO. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2990842|Reactome:R-HSA-2993763|Reactome:R-HSA-2990840 molecular_function owl:Class GO:0016929 biolink:NamedThing SUMO-specific protease activity Catalysis of the hydrolysis of peptide or isopeptide bonds within SUMO, or between the SUMO and a larger protein to which it has been conjugated. tmpzr1t_l9r_go_relaxed.owl ULP|SUSP This term should not be used for direct manual annotation because the supporting experiments should always distinguish whether the activity is part of maturation or SUMO removal. molecular_function owl:Class GO:0034782 biolink:NamedThing dimethylmalonate decarboxylase activity Catalysis of the reaction: dimethylmalonate + H+ = isobutyrate + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1031 molecular_function owl:Class GO:0085037 biolink:NamedThing extrahaustorial membrane The membrane surrounding the symbiont haustorium during symbiosis, derived from the host plasma membrane. tmpzr1t_l9r_go_relaxed.owl See also: haustorium ; GO:0085035 and extrahaustorial matrix ; GO:0085036. jl 2010-07-27T04:00:49Z cellular_component owl:Class GO:0000460 biolink:NamedThing maturation of 5.8S rRNA Any process involved in the maturation of a precursor 5.8S ribosomal RNA (rRNA) molecule into a mature 5.8S rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048255 biolink:NamedThing mRNA stabilization Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043286 biolink:NamedThing regulation of poly(3-hydroxyalkanoate) biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria. tmpzr1t_l9r_go_relaxed.owl regulation of PHA|regulation of poly(3-hydroxyalkanoate) formation|regulation of poly(3-hydroxyalkanoate) anabolism|regulation of poly(3-hydroxyalkanoate) synthesis|regulation of poly(3-hydroxyalkanoate) biosynthesis biological_process owl:Class GO:0042283 biolink:NamedThing dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity Catalysis of the addition of the second glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Glc(1)Man(9)GlcNAc(2)-PP-Dol. tmpzr1t_l9r_go_relaxed.owl dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase activity EC:2.4.1.265|MetaCyc:RXN-5471|RHEA:31307 molecular_function owl:Class GO:0051112 biolink:NamedThing peptidyl-histidine adenylylation, to form peptidyl-1'-(phospho-5'-adenosine)-L-histidine The adenylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-adenosine)-L-histidine (otherwise known as tau-AMP-histidine, tele-AMP-histidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0371 biological_process owl:Class GO:0030274 biolink:NamedThing LIM domain binding Binding to a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016446 biolink:NamedThing somatic hypermutation of immunoglobulin genes Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins. tmpzr1t_l9r_go_relaxed.owl somatic hypermutation of antibody genes biological_process owl:Class GO:0102200 biolink:NamedThing N-acetylphosphatidylethanolamine-hydrolysing phospholipase activity Catalysis of the reaction: H2O + an N-acylphosphatidylethanolamine = H+ + an N-acylethanolamine + a 1,2-diacyl-sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl EC:3.1.4.54|MetaCyc:RXN-12116|RHEA:33159 molecular_function owl:Class GO:1905219 biolink:NamedThing regulation of platelet formation Any process that modulates the frequency, rate or extent of platelet formation. tmpzr1t_l9r_go_relaxed.owl regulation of platelet extrusion sl 2016-06-06T22:15:46Z biological_process owl:Class GO:0045479 biolink:NamedThing vesicle targeting to fusome The recruitment of vesicles to the fusome. The vesicles become the fusome tubule network and are necessary for the assembly of the fusome. tmpzr1t_l9r_go_relaxed.owl vesicle-fusome targeting biological_process owl:Class GO:1905684 biolink:NamedThing regulation of plasma membrane repair Any process that modulates the frequency, rate or extent of plasma membrane repair. tmpzr1t_l9r_go_relaxed.owl bhm 2016-11-14T10:30:31Z biological_process owl:Class GO:0090448 biolink:NamedThing glucosinolate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucosinolate(out) + H+(out) = glucosinolate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl glucosinolate:hydrogen symporter activity tb 2012-09-07T16:10:37Z molecular_function owl:Class GO:0034915 biolink:NamedThing 2-methylhexanoyl-CoA C-acetyltransferase activity Catalysis of the reaction: 4-methyl-3-oxooctanoyl-CoA + CoA = acetyl-CoA + 2-methylhexanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.-|UM-BBD_reactionID:r0927 molecular_function owl:Class GO:0062048 biolink:NamedThing lymphotoxin complex A homo- or heterotrimeric protein containing complex consisting of alpha and beta lymphotoxin subunits in different stoichiometric combinations. tmpzr1t_l9r_go_relaxed.owl lymphotoxin alpha-beta dph 2018-05-18T18:34:55Z cellular_component owl:Class GO:1904273 biolink:NamedThing L-alanine import across plasma membrane The directed import of L-alanine from the extracellular region across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036153 biolink:NamedThing triglyceride acyl-chain remodeling Remodeling the acyl chains of triacylglycerol, through sequential deacylation and re-acylation reactions, to generate triacylglycerol containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl triacylglycerol acyl-chain remodeling bf 2012-03-14T02:49:05Z biological_process owl:Class GO:0051161 biolink:NamedThing arabitol metabolic process The chemical reactions and pathways involving arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl arabitol metabolism biological_process owl:Class GO:0036531 biolink:NamedThing glutathione deglycation The removal of a sugar or dicarbonyl from glycated glutathione. Glutathione is the tripeptide glutamylcysteinylglycine. tmpzr1t_l9r_go_relaxed.owl bf 2016-08-04T10:45:27Z biological_process owl:Class GO:0042636 biolink:NamedThing negative regulation of hair cycle Any process that stops, prevents, or reduces the frequency, rate or extent of the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair. tmpzr1t_l9r_go_relaxed.owl inhibition of hair cycle|down-regulation of hair cycle|down regulation of hair cycle|downregulation of hair cycle biological_process owl:Class GO:0007366 biolink:NamedThing periodic partitioning by pair rule gene Allocation of cells to parasegments in the embryo, through the action of overlapping series of pair rule gene activities. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007365 biolink:NamedThing periodic partitioning The regionalization process that divides the spatial regions of an embryo into serially repeated regions. tmpzr1t_l9r_go_relaxed.owl Note that examples of periodic partitions are tagmata, segments or parasegments. biological_process owl:Class GO:0010895 biolink:NamedThing negative regulation of ergosterol biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106119 biolink:NamedThing negative regulation of sterol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of a sterol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-19T17:44:46Z biological_process owl:Class GO:0075047 biolink:NamedThing negative regulation of formation by symbiont of haustorium for nutrient acquisition from host Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0009970 biolink:NamedThing cellular response to sulfate starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. tmpzr1t_l9r_go_relaxed.owl cellular response to sulphate starvation biological_process owl:Class GO:0018899 biolink:NamedThing 1,2-dichloroethane metabolic process The chemical reactions and pathways involving 1,2-dichloroethane, a major commodity chemical used, for example, in the manufacture of vinyl chloride. tmpzr1t_l9r_go_relaxed.owl 1,2-dichloroethane metabolism UM-BBD_pathwayID:dce biological_process owl:Class GO:2001211 biolink:NamedThing negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway Any process that stops, prevents or reduces the frequency, rate or extent of isopentenyl diphosphate biosynthetic process, mevalonate pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of Ac-MVA pathway|negative regulation of isopentenyl diphosphate formation, mevalonate pathway|negative regulation of isopentenyl diphosphate synthesis, mevalonate pathway|negative regulation of isopentenyl diphosphate anabolism, mevalonate pathway|negative regulation of acetate-mevalonate pathway bf 2011-11-15T10:53:45Z biological_process owl:Class GO:0000969 biolink:NamedThing tRNA exon ligation utilizing ATP as source of linkage phosphate A tRNA exon ligation process in which the splice junction phosphate is derived from exogenous ATP. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in vertebrate species. tmpzr1t_l9r_go_relaxed.owl krc 2009-04-28T10:29:37Z biological_process owl:Class GO:0008877 biolink:NamedThing glucose-1-phosphatase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + H2O = D-glucose + phosphate. tmpzr1t_l9r_go_relaxed.owl alpha-D-glucose-1-phosphate phosphohydrolase activity|D-glucose-1-phosphate phosphohydrolase activity EC:3.1.3.10|MetaCyc:GLUCOSE-1-PHOSPHAT-RXN|KEGG_REACTION:R00304|RHEA:19933 molecular_function owl:Class GO:0090032 biolink:NamedThing negative regulation of steroid hormone biosynthetic process Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:41:35Z biological_process owl:Class GO:0008676 biolink:NamedThing 3-deoxy-8-phosphooctulonate synthase activity Catalysis of the reaction: D-arabinose 5-phosphate + H(2)O + phosphoenolpyruvate = 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxy-8-phosphooctonic synthetase activity|2-dehydro-3-deoxy-phosphooctonate aldolase activity|2-dehydro-3-deoxyphosphooctonate aldolase activity|phospho-2-keto-3-deoxyoctonate aldolase activity|phosphoenolpyruvate:D-arabinose-5-phosphate C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)|3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity|2-dehydro-3-deoxy-D-octonate-8-phosphate D-arabinose-5-phosphate-lyase (pyruvate-phosphorylating) activity|3-deoxyoctulosonic 8-phosphate synthetase activity|3-deoxy-D-manno-octulosonate-8-phosphate synthase activity|3-deoxy-D-mannooctulosonate-8-phosphate synthetase activity|KDO-8-phosphate synthetase activity|KDO-8-P synthase activity|KDOP synthase activity RHEA:14053|EC:2.5.1.55|MetaCyc:KDO-8PSYNTH-RXN|KEGG_REACTION:R03254 Note that this function was formerly EC:4.1.2.16. molecular_function owl:Class GO:0036526 biolink:NamedThing peptidyl-cysteine deglycation The removal of a sugar or dicarbonyl from a cysteine residue of a glycated protein. tmpzr1t_l9r_go_relaxed.owl deglycation of N-acetylcysteine bf 2016-08-04T10:35:25Z biological_process owl:Class GO:0010096 biolink:NamedThing specification of sepal identity The process in which a floral organ primordium acquires sepal identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006239 biolink:NamedThing dCMP salvage Any process that generates dCMP, deoxycytidine monophosphate from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl deoxycytidine monophosphate salvage biological_process owl:Class GO:0097259 biolink:NamedThing 20-aldehyde-leukotriene B4 20-monooxygenase activity Catalysis of the reaction: 20-oxo-leukotriene B4 + O2 + reduced [NADPH-hemoprotein reductase] = 20-carboxy-leukotriene B4 + 2 H+ + H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161792|Reactome:R-HSA-2161979|RHEA:48672 pr 2012-03-07T03:40:05Z molecular_function owl:Class GO:0051703 biolink:NamedThing biological process involved in intraspecies interaction between organisms Any process in which an organism has an effect on an organism of the same species. tmpzr1t_l9r_go_relaxed.owl intraspecies interaction between organisms|intraspecies interaction with other organisms https://github.com/geneontology/go-ontology/issues/20191 biological_process owl:Class GO:0070395 biolink:NamedThing lipoteichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of lipoteichoic acid, which is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl lipoteichoic acid synthesis|lipoteichoic acid anabolism|lipoteichoic acid formation|lipoteichoic acid biosynthesis|LTA biosynthetic process biological_process owl:Class GO:0071836 biolink:NamedThing nectar secretion The controlled release of a nectar by a cell or a tissue. Nectar is a fluid secreted by many angiosperms to promote pollination by providing a reward to pollinators. Nectar may also deter certain organisms from visiting or play other biological roles. Nectar is a complex solution that may include the following types of compounds: sugars, amino acids, organic acids, alkaloids, flavonoids, glycosides, vitamins, phenolics, metal ions, oils, free fatty acids, and proteins. tmpzr1t_l9r_go_relaxed.owl nectar production mah 2010-09-09T01:06:04Z biological_process owl:Class GO:0060425 biolink:NamedThing lung morphogenesis The process in which the anatomical structures of the lung are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001515 biolink:NamedThing opioid peptide activity Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033675 biolink:NamedThing pericanalicular vesicle A membrane-bounded vesicle found near the apical, or pericanalicular, membrane of a hepatocyte; contains proteins involved in bile salt transport and other fluid and solute transport processes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098806 biolink:NamedThing mRNA deadenylation-mediated gene silencing by miRNA Shortening of the poly(A) tail of a nuclear-transcribed mRNA following miRNA binding to mRNA, resulting in destabilization of the mRNA and a reduction in the efficiency of its translation. tmpzr1t_l9r_go_relaxed.owl deadenylation involved in gene silencing by miRNA https://github.com/geneontology/go-ontology/issues/20568 biological_process owl:Class GO:0035279 biolink:NamedThing mRNA destabilization-mediated gene silencing by miRNA The process in which microRNAs (miRNAs) direct the cleavage of target mRNAs. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA base pairing with near-perfect complementarity to the target mRNA will typically direct targeted endonucleolytic cleavage of the mRNA. Many plant miRNAs downregulate gene expression through this mechanism. tmpzr1t_l9r_go_relaxed.owl mRNA cleavage involved in gene silencing by microRNA|mRNA cleavage involved in gene silencing by miRNA|gene silencing by miRNA, mRNA cleavage|miRNA-mediated gene silencing, mRNA cleavage https://github.com/geneontology/go-ontology/issues/22389 biological_process owl:Class GO:0018296 biolink:NamedThing protein-FAD linkage via O4'-(8alpha-FAD)-L-tyrosine The formation of a protein-FAD linkage via O4'-(8-alpha-FAD)-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0145 biological_process owl:Class GO:2000265 biolink:NamedThing positive regulation of blood coagulation, extrinsic pathway Any process that activates or increases the frequency, rate or extent of blood coagulation, extrinsic pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:44:46Z biological_process owl:Class GO:0002942 biolink:NamedThing tRNA m2,2-guanine biosynthesis The process whereby a guanine residue in a transfer RNA is methylated twice at the N2 position. tmpzr1t_l9r_go_relaxed.owl hjd 2012-11-16T16:07:20Z biological_process owl:Class GO:1905119 biolink:NamedThing response to haloperidol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a haloperidol stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2016-04-08T12:36:39Z biological_process owl:Class GO:0043924 biolink:NamedThing suramin binding Binding to suramin, a naphthalenesulfonic acid compound which is used in the treatment of diseases caused by trypanosomes and worms. tmpzr1t_l9r_go_relaxed.owl Germanin binding molecular_function owl:Class GO:0035457 biolink:NamedThing cellular response to interferon-alpha Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-alpha stimulus. Interferon-alpha is a type I interferon. tmpzr1t_l9r_go_relaxed.owl cellular response to interferon alfa-n3|cellular response to lymphoblastoid interferon|cellular response to lymphoblast interferon|cellular response to interferon alfa-n1|cellular response to leukocyte interferon bf 2010-04-16T11:08:29Z biological_process owl:Class GO:0046381 biolink:NamedThing CMP-N-acetylneuraminate metabolic process The chemical reactions and pathways involving CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate metabolism biological_process owl:Class GO:0044875 biolink:NamedThing gamma-glutamyl hercynylcysteine sulfoxide synthase activity Catalysis of the reaction: gamma-glutamyl cysteine + hercynine + O2 <=> gamma-glutamyl-hercynyl cysteine sulfoxide + H2O. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyl hercynylcysteine S-oxide synthase|gamma-glutamyl hercynylcysteine sulfoxide synthase https://github.com/geneontology/go-ontology/issues/11163 EC:1.14.99.50|RHEA:42672 jl 2014-12-15T11:44:54Z molecular_function owl:Class GO:0032445 biolink:NamedThing fructose import The directed movement of the hexose monosaccharide fructose into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl fructose uptake biological_process owl:Class GO:0008876 biolink:NamedThing quinoprotein glucose dehydrogenase activity Catalysis of the reaction: D-glucose + ubiquinone = D-glucono-1,5-lactone + ubiquinol. tmpzr1t_l9r_go_relaxed.owl glucose dehydrogenase (pyrroloquinoline-quinone) activity|quinoprotein D-glucose dehydrogenase activity|glucose dehydrogenase (PQQ-dependent) activity|D-glucose:(pyrroloquinoline-quinone) 1-oxidoreductase activity|D-glucose:ubiquinone oxidoreductase activity EC:1.1.5.2|RHEA:22152|MetaCyc:GLUCDEHYDROG-RXN Formerly EC:1.1.99.17. molecular_function owl:Class GO:0004344 biolink:NamedThing glucose dehydrogenase activity Catalysis of the reaction: D-glucose + acceptor = D-glucono-1,5-lactone + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl glucose dehydrogenase (Aspergillus) activity|D-glucose:acceptor 1-oxidoreductase|glucose dehydrogenase (acceptor) activity|glucose dehydrogenase (decarboxylating)|D-glucose:(acceptor) 1-oxidoreductase MetaCyc:GLUCOSE-DEHYDROGENASE-ACCEPTOR-RXN|EC:1.1.99.10|KEGG_REACTION:R00305|RHEA:24540 GO:0008708 molecular_function owl:Class GO:0033918 biolink:NamedThing kappa-carrageenase activity Catalysis of the endohydrolysis of 1,4-beta-D-linkages between D-galactose 4-sulfate and 3,6-anhydro-D-galactose in kappa-carrageenans. tmpzr1t_l9r_go_relaxed.owl kappa-carrageenan 4-beta-D-glycanohydrolase (configuration-retaining) activity|kappa-carrageenan 4-beta-D-glycanohydrolase activity MetaCyc:3.2.1.83-RXN|EC:3.2.1.83 molecular_function owl:Class GO:0018886 biolink:NamedThing anaerobic carbon tetrachloride metabolic process The chemical reactions and pathways involving carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic carbon tetrachloride metabolism UM-BBD_pathwayID:ctc biological_process owl:Class GO:0003412 biolink:NamedThing establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis The specification and formation of the apicobasal polarity of an epithelial cell that contributes to the shaping of a camera-type eye. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T03:09:23Z biological_process owl:Class GO:0005167 biolink:NamedThing neurotrophin TRK receptor binding Binding to a neurotrophin TRK receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRK receptor ligand molecular_function owl:Class GO:0071628 biolink:NamedThing intrinsic component of fungal-type vacuolar membrane The component of a fungal-type vacuole membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T03:53:00Z cellular_component owl:Class GO:0036309 biolink:NamedThing protein localization to M-band Any process in which a protein is transported to, and/or maintained in, the M band. The M band is the midline of aligned thick filaments in a sarcomere. tmpzr1t_l9r_go_relaxed.owl protein localization to mesophragma|protein localization to M disc|cellular protein localization to M-band|protein localization to M line bf 2012-08-14T14:02:58Z biological_process owl:Class GO:1905473 biolink:NamedThing positive regulation of histone H3-K79 dimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K79 dimethylation. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H3-K79 dimethylation|up regulation of histone H3 K79 dimethylation|upregulation of histone H3 K79 dimethylation|positive regulation of histone lysine H3 K79 dimethylation|activation of histone H3-K79 dimethylation|up-regulation of histone H3 K79 dimethylation|up-regulation of histone lysine H3 K79 dimethylation|up regulation of histone lysine H3 K79 dimethylation|positive regulation of histone H3 K79 dimethylation|up-regulation of histone H3-K79 dimethylation|activation of histone lysine H3 K79 dimethylation|upregulation of histone H3-K79 dimethylation|activation of histone H3 K79 dimethylation|upregulation of histone lysine H3 K79 dimethylation hbye 2016-09-21T15:27:17Z biological_process owl:Class GO:0050257 biolink:NamedThing riboflavin phosphotransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + riboflavin = D-glucose + FMN. tmpzr1t_l9r_go_relaxed.owl G-1-P phosphotransferase activity|D-glucose-1-phosphate:riboflavin 5'-phosphotransferase activity|riboflavine phosphotransferase activity|alpha-D-glucose-1-phosphate:riboflavin 5'-phosphotransferase activity KEGG_REACTION:R00550|MetaCyc:RIBOFLAVIN-PHOSPHOTRANSFERASE-RXN|RHEA:20409|EC:2.7.1.42 molecular_function owl:Class GO:0015819 biolink:NamedThing lysine transport The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-lysine import|lysine import|lysine uptake|L-lysine transport dph 2012-10-05T10:22:26Z GO:0034226|GO:0061461 biological_process owl:Class GO:0015802 biolink:NamedThing basic amino acid transport The directed movement of basic amino acids, amino acids with a pH above 7, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050911 biolink:NamedThing detection of chemical stimulus involved in sensory perception of smell The series of events involved in the perception of smell in which an olfactory chemical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of smell, sensory transduction of chemical stimulus|sensory detection of smell|sensory transduction of chemical stimulus during perception of smell|perception of smell, detection of chemical stimulus|sensory detection of scent|sensory detection of chemical stimulus during perception of smell|perception of smell, sensory detection of chemical stimulus|sensory transduction of scent|sensory transduction of smell biological_process owl:Class GO:0034751 biolink:NamedThing aryl hydrocarbon receptor complex A protein complex that acts as an aryl hydrocarbon (Ah) receptor. Cytosolic and nuclear Ah receptor complexes have different subunit composition, but both contain the ligand-binding subunit AhR. tmpzr1t_l9r_go_relaxed.owl AHRC|AhR complex cellular_component owl:Class GO:1902058 biolink:NamedThing regulation of sporocarp development involved in sexual reproduction Any process that modulates the frequency, rate or extent of sporocarp development involved in sexual reproduction. tmpzr1t_l9r_go_relaxed.owl regulation of perfect stage fruiting body development|regulation of fruiting body development involved in sexual reproduction|regulation of ascus development|regulation of fruiting body formation involved in sexual reproduction di 2013-04-16T04:08:38Z biological_process owl:Class GO:0009865 biolink:NamedThing pollen tube adhesion The process in which the pollen tube adheres to cells of the stigma and style. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004873 biolink:NamedThing asialoglycoprotein receptor activity Receiving an asialoglycoprotein, and delivering the asialoglycoprotein into the cell via endocytosis. An asialoglycoprotein is a plasma glycoproteins from which the terminal sialic acid residue on their complex carbohydrate groups has been removed. The asialoglycoprotein receptor recognizes the terminal galactose and N-acetylgalactosamine units of the asialoglycoprotein, the receptor-ligand complex is internalized and transported to a sorting organelle where disassociation occurs before the receptor is recycled to the cell membrane. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050289 biolink:NamedThing spermidine dehydrogenase activity Catalysis of the reaction: spermidine + acceptor + H2O = 1,3-diaminopropane + 4-aminobutanal + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl spermidine:(acceptor) oxidoreductase activity|spermidine:acceptor oxidoreductase activity RHEA:14273|EC:1.5.99.6|MetaCyc:SPERMIDINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0047758 biolink:NamedThing ATP:2-methylpropanoate phosphotransferase activity Catalysis of the reaction: 2-methylpropanoate + ATP = 2-methylpropanoyl phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:isobutyrate 1-phosphotransferase activity|isobutyrate kinase activity|ATP:2-methylpropanoate 1-phosphotransferase activity|branched-chain-fatty-acid kinase activity|ATP:branched-chain-fatty-acid 1-phosphotransferase activity|branched-chain fatty acid kinase activity|ATP:2-methylpropanoate kinase activity MetaCyc:BRANCHED-CHAIN-FATTY-ACID-KINASE-RXN|EC:2.7.2.14|KEGG_REACTION:R04002|RHEA:24156 molecular_function owl:Class GO:0150016 biolink:NamedThing basal distal dendrite Any dendrite in a dendritic tree that emerges near the basal pole of a neuron (e.g. in bipolar neurons, basal dendrites are either on the same side of the soma as the axon, or project toward the axon), and which is farthest away from the neuronal cell body (the soma). tmpzr1t_l9r_go_relaxed.owl bc 2017-12-21T12:11:47Z cellular_component owl:Class GO:1901595 biolink:NamedThing response to hesperadin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hesperadin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T17:16:57Z biological_process owl:Class GO:0061607 biolink:NamedThing peptide alpha-N-propionyltransferase activity Catalysis of the reaction: propionyl-CoA + peptide = CoA + N-alpha-propionylpeptide. This reaction is the propionylation of the N-terminal amino acid residue of a peptide or protein. tmpzr1t_l9r_go_relaxed.owl N-terminal propionyltransferase activity dph 2014-02-11T14:24:35Z molecular_function owl:Class GO:0036110 biolink:NamedThing cellular response to inositol starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of inositol. tmpzr1t_l9r_go_relaxed.owl bf 2012-02-15T10:46:07Z biological_process owl:Class GO:2000751 biolink:NamedThing histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore Any histone H3-T3 phosphorylation that is involved in chromosome passenger complex localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl histone H3-T3 phosphorylation of chromosome passenger complex localization to kinetochore|histone H3-T3 phosphorylation of chromosomal passenger complex localization to kinetochore|histone H3-T3 phosphorylation of CPC localization to kinetochore|histone H3-T3 phosphorylation of CPC complex localization to kinetochore|histone H3-T3 phosphorylation of chromosome passenger complex localisation to kinetochore vw 2011-06-16T12:56:29Z biological_process owl:Class GO:0035357 biolink:NamedThing peroxisome proliferator activated receptor signaling pathway The series of molecular signals initiated by binding of a ligand to any of the peroxisome proliferator activated receptors (alpha, beta or gamma) in the nuclear membrane, and ending with the initiation or termination of the transcription of target genes. tmpzr1t_l9r_go_relaxed.owl PPAR signaling pathway|peroxisome proliferator activated receptor signalling pathway|peroxisome proliferator-activated receptor signaling pathway bf 2010-03-05T10:30:10Z biological_process owl:Class GO:1905664 biolink:NamedThing regulation of calcium ion import across plasma membrane Any process that modulates the frequency, rate or extent of calcium ion import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl An example of this is PPP3CA in human (Q08209) in 17640527 (inferred from direct assay). bhm 2016-11-11T09:26:06Z biological_process owl:Class GO:0071181 biolink:NamedThing MAML3-RBP-Jkappa-ICN3 complex A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML3-RBP-Jkappa-Notch3 complex mah 2009-11-23T02:52:05Z cellular_component owl:Class GO:1905628 biolink:NamedThing negative regulation of serotonin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of serotonin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of serotonin biosynthesis|inhibition of serotonin biosynthetic process|inhibition of serotonin synthesis|downregulation of serotonin anabolism|down-regulation of serotonin anabolism|inhibition of serotonin formation|down-regulation of serotonin synthesis|inhibition of serotonin biosynthesis|down regulation of serotonin formation|downregulation of serotonin synthesis|negative regulation of serotonin biosynthesis|down regulation of serotonin anabolism|down-regulation of serotonin formation|down-regulation of serotonin biosynthetic process|down-regulation of serotonin biosynthesis|downregulation of serotonin formation|downregulation of serotonin biosynthesis|inhibition of serotonin anabolism|downregulation of serotonin biosynthetic process|down regulation of serotonin synthesis|negative regulation of serotonin formation|negative regulation of serotonin anabolism|negative regulation of serotonin synthesis|down regulation of serotonin biosynthetic process pad 2016-10-31T14:26:28Z biological_process owl:Class GO:0047894 biolink:NamedThing flavonol 3-sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + quercetin = adenosine 3',5'-diphosphate + H(+) + quercetin 3-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:quercetin 3-sulfotransferase activity|flavonol 3-sulphotransferase activity RHEA:13453|EC:2.8.2.25|KEGG_REACTION:R02159|MetaCyc:FLAVONOL-3-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:0043427 biolink:NamedThing carbon fixation by 3-hydroxypropionate cycle An autotrophic carbon dioxide fixation pathway by which two molecules of carbon dioxide are fixed to form glyoxylate. Acetyl coenzyme A (acetyl-CoA) is assumed to be converted to malate, and two CO2 molecules are thereby fixed. Malyl-CoA is thought to be cleaved to acetyl-CoA, the starting molecule, and glyoxylate, the carbon fixation product. tmpzr1t_l9r_go_relaxed.owl hydroxypropionate cycle|hydroxypropionate pathway|3-hydroxypropionate cycle|3-hydroxypropionate pathway biological_process owl:Class GO:0036290 biolink:NamedThing protein trans-autophosphorylation The phosphorylation by a protein of a residue on an identical protein. For example, phosphorylation by the other kinase within a homodimer. tmpzr1t_l9r_go_relaxed.owl trans-autophosphorylation bf 2012-07-18T10:27:06Z biological_process owl:Class GO:0034831 biolink:NamedThing (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity Catalysis of the reaction: (R)-1,2,3,4-tetrahydronaphthol = 1,2,3,4-tetrahydronaphthalone + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1176 molecular_function owl:Class GO:1904050 biolink:NamedThing positive regulation of spontaneous neurotransmitter secretion Any process that activates or increases the frequency, rate or extent of spontaneous neurotransmitter secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of stimulus-independent neurotransmitter secretion|up regulation of spontaneous neurotransmitter secretion|upregulation of spontaneous neurotransmitter secretion|activation of stimulus-independent neurotransmitter secretion|activation of spontaneous neurotransmitter secretion|up regulation of stimulus-independent neurotransmitter secretion|up-regulation of spontaneous neurotransmitter secretion|upregulation of stimulus-independent neurotransmitter secretion|positive regulation of stimulus-independent neurotransmitter secretion An example of this is PARK2 / parkin in human (O60260) in PMID:22314364 (inferred from mutant phenotype). pad 2015-03-17T10:37:23Z biological_process owl:Class GO:1900167 biolink:NamedThing negative regulation of glial cell-derived neurotrophic factor production Any process that stops, prevents or reduces the frequency, rate or extent of glial cell-derived neurotrophic factor production. tmpzr1t_l9r_go_relaxed.owl inhibition of glial cell line-derived neurotrophic factor secretion|negative regulation of glial cell-derived neurotrophic factor secretion|negative regulation of GDNF secretion|inhibition of GDNF secretion|negative regulation of glial cell line-derived neurotrophic factor secretion yaf 2012-03-08T03:44:43Z biological_process owl:Class GO:2000696 biolink:NamedThing regulation of epithelial cell differentiation involved in kidney development Any process that modulates the frequency, rate or extent of epithelial cell differentiation involved in kidney development. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-16T04:23:52Z biological_process owl:Class GO:0014832 biolink:NamedThing urinary bladder smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904475 biolink:NamedThing regulation of small GTPase binding Any process that modulates the frequency, rate or extent of small GTPase binding. tmpzr1t_l9r_go_relaxed.owl regulation of Ras GTPase binding https://github.com/geneontology/go-ontology/issues/18750 sl 2015-07-10T22:47:31Z biological_process owl:Class GO:0016994 biolink:NamedThing precorrin-6A reductase activity Catalysis of the reaction: precorrin-6B + NADP+ = precorrin-6A + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl precorrin-6B:NADP+ oxidoreductase activity|precorrin-6Y:NADP+ oxidoreductase activity|precorrin-6Y:NADP(+) oxidoreductase activity|precorrin-6X reductase activity EC:1.3.1.54|MetaCyc:1.3.1.54-RXN|RHEA:23408 molecular_function owl:Class GO:0019084 biolink:NamedThing middle viral transcription The viral transcription that takes place after early transcription in the viral life cycle, and which involves the transcription of genes required for replication. tmpzr1t_l9r_go_relaxed.owl (delayed) early viral mRNA transcription biological_process owl:Class GO:0031617 biolink:NamedThing NMS complex A supercomplex formed by the association of two subcomplexes (known as MIND and Ndc80 in Schizosaccharomyces) with additional proteins at the kinetochores of condensed nuclear chromosomes. tmpzr1t_l9r_go_relaxed.owl KMN kinetochore network|Ndc80-MIND-Spc7 complex|KNL-1-Mis12-Ndc80 cellular_component owl:Class GO:0044551 biolink:NamedThing envenomation resulting in vasodilation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with resultant vasodilation of blood vessels, usually causing a reduction in blood pressure, in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in modulation of vasodilation in other organism|envenomation resulting in regulation of vasodilation in other organism jl 2012-03-29T02:07:45Z biological_process owl:Class GO:0140646 biolink:NamedThing negative regulation of pre-B cell receptor expression Any process that stops, prevents or reduces the frequency, rate or extent of the process leading up to expression of the pre-B cell receptor on the surface of pre-B cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20121 pg 2021-05-19T10:50:53Z biological_process owl:Class GO:0075511 biolink:NamedThing macropinosome lysis involved in viral entry into host cell Viral-induced lysis of the macropinosome involved in the uptake of a virus into a host cell. Occurs after internalization of the virus in a macropinosome, and results in the release of viral contents from the macropinosome into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl jl 2011-07-27T11:38:07Z biological_process owl:Class GO:0034159 biolink:NamedThing regulation of toll-like receptor 8 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 8 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR8 signaling pathway|regulation of toll-like receptor 8 signalling pathway biological_process owl:Class GO:0019929 biolink:NamedThing peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid The cross-linking of a cysteine residue to a glutamic acid residue to form 4-(S-L-cysteinyl)-L-glutamic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0315 biological_process owl:Class GO:0071164 biolink:NamedThing RNA trimethylguanosine synthase activity Catalysis of two successive methyl transfer reactions from AdoMet to the N-2 atom of guanosine, thereby converting 7-methylguanosine in an RNA cap to 2,2,7 trimethylguanosine. tmpzr1t_l9r_go_relaxed.owl snRNA methyltransferase activity|cap hypermethylase activity|small nuclear RNA methyltransferase activity mah 2009-11-19T03:23:20Z molecular_function owl:Class GO:0052163 biolink:NamedThing symbiont defense to host-produced nitric oxide Any process in which a symbiont modulates the frequency, rate or extent of the production of nitric oxide as part of the innate immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related host NO production|evasion or tolerance by organism of nitric oxide produced by other organism involved in symbiotic interaction|response to defense-related host nitric oxide production|modulation by organism of defense-related nitric oxide production in other organism involved in symbiotic interaction|defense response to host innate immune response nitric oxide production|evasion or tolerance by organism of host-produced nitric oxide|evasion or tolerance by organism of host-produced NO|response to defense-related nitric oxide production by other organism involved in symbiotic interaction|evasion or tolerance of nitric oxide produced by host in response to organism|evasion or tolerance by organism of host nitric oxide|evasion or tolerance by symbiont of host-produced nitric oxide|modulation by symbiont of defense-related host nitric oxide production|evasion or tolerance by organism of host NO|evasion or tolerance of NO produced by host in response to organism https://github.com/geneontology/go-ontology/issues/18798 GO:0052565|GO:0052376|GO:0052551|GO:0052060|GO:0052302 biological_process owl:Class GO:0044641 biolink:NamedThing envenomation resulting in positive regulation of complement activation, lectin pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of complement activation via the lectin pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-11T11:50:23Z biological_process owl:Class GO:0010724 biolink:NamedThing regulation of definitive erythrocyte differentiation Any process that modulates the rate, frequency, or extent of definitive erythrocyte differentiation. Definitive erythrocyte differentiation occurs as part of the process of definitive hemopoiesis. tmpzr1t_l9r_go_relaxed.owl regulation of definitive erythropoiesis|regulation of definitive RBC differentiation|regulation of definitive red blood cell differentiation biological_process owl:Class GO:1903621 biolink:NamedThing protein localization to photoreceptor connecting cilium A process in which a protein is transported to, or maintained in, a location within a photoreceptor connecting cilium. tmpzr1t_l9r_go_relaxed.owl protein localisation in photoreceptor connecting cilium|protein localisation to photoreceptor connecting cilium|protein localization in photoreceptor connecting cilium jl 2014-11-19T17:17:17Z biological_process owl:Class GO:1904491 biolink:NamedThing protein localization to ciliary transition zone A process in which a protein is transported to, or maintained in, a location within a ciliary transition zone. tmpzr1t_l9r_go_relaxed.owl protein localisation to ciliary transition zone|protein localisation in ciliary transition zone|protein localization in ciliary transition zone kmv 2015-07-17T20:43:21Z biological_process owl:Class GO:2000882 biolink:NamedThing negative regulation of starch catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of starch catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of starch catabolism|negative regulation of starch degradation|negative regulation of starch breakdown bf 2011-07-27T03:23:46Z biological_process owl:Class GO:0052867 biolink:NamedThing phosphatidylinositol-1,4,5-trisphosphate 5-phosphatase activity Catalysis of the reaction: phosphatidyl-1D-myo-inositol 1,4,5-trisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 1,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol-trisphosphatase activity|PtdIns(1,4,5)P3 phosphatase activity|phosphatidyl-myo-inositol-1,4,5-trisphosphate phosphatase activity|triphosphoinositide phosphatase activity|PtdIns(1,4,5)P(3) phosphatase activity|triphosphoinositide phosphomonoesterase activity|phosphatidylinositol 1,4,5-trisphosphate phosphatase activity 2012-01-11T12:07:50Z molecular_function owl:Class GO:0034594 biolink:NamedThing phosphatidylinositol trisphosphate phosphatase activity Catalysis of the reaction: phosphatidylinositol trisphosphate + H2O = phosphatidylinositol bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901027 biolink:NamedThing dextrin catabolic process The chemical reactions and pathways resulting in the breakdown of dextrin. tmpzr1t_l9r_go_relaxed.owl dextrin degradation|dextrin catabolism|dextrin breakdown al 2012-06-19T03:12:19Z biological_process owl:Class GO:0102808 biolink:NamedThing pelargonidin 3-O-glucoside 2''-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + pelargonidin 3-O-beta-D-glucoside <=> H+ + pelargonidin 3-O-sophoroside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8177 molecular_function owl:Class GO:0034687 biolink:NamedThing integrin alphaL-beta2 complex An integrin complex that comprises one alphaL subunit and one beta2 subunit. tmpzr1t_l9r_go_relaxed.owl Itgal-Itgb2 complex|alphaL-beta2 integrin complex cellular_component owl:Class GO:0031986 biolink:NamedThing proteinoplast A leucoplast in which protein is stored. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Proteinoplast cellular_component owl:Class GO:0009516 biolink:NamedThing leucoplast A colorless plastid involved in the synthesis of monoterpenes. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Leucoplast cellular_component owl:Class GO:0005606 biolink:NamedThing laminin-1 complex A laminin complex composed of alpha1, beta1 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-111 complex cellular_component owl:Class GO:0047555 biolink:NamedThing 3',5'-cyclic-GMP phosphodiesterase activity Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl cGMP-specific phosphodiesterase activity|cyclic 3',5'-GMP phosphodiesterase activity|cGMP-PDE|cGMP phosphodiesterase activity|guanosine cyclic 3',5'-phosphate phosphodiesterase activity|3',5' cyclic-GMP phosphodiesterase activity|cyclic GMP phosphodiesterase activity|cyclic guanosine 3',5'-monophosphate phosphodiesterase activity|3',5'-cyclic-GMP 5'-nucleotidohydrolase activity|cyclic guanosine 3',5'-phosphate phosphodiesterase activity Reactome:R-HSA-418456|EC:3.1.4.35|Reactome:R-HSA-74059|RHEA:16957|MetaCyc:35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN|Reactome:R-HSA-4086392 GO:0004116 molecular_function owl:Class GO:0021621 biolink:NamedThing hypoglossal nerve structural organization The process that contributes to the act of creating the structural organization of the hypoglossal nerve. This process pertains to the physical shaping of a rudimentary structure. This motor nerve innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. tmpzr1t_l9r_go_relaxed.owl hypoglossal nerve structural organisation|CN XII structural organization biological_process owl:Class GO:0098769 biolink:NamedThing TIMP family protein binding Binding to a member of the Tissue inhibitors of metalloproteinases (TIMPs) family. TIMPs are endogenous protein regulators of the matrix metalloproteinase (MMPs) family. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001626 biolink:NamedThing nociceptin receptor activity Combining with the peptide nociceptin, and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl X-opioid receptor activity|OFQ receptor activity|nociceptin/orphanin-FQ receptor activity|ORPH receptor|orphanin-FQ receptor activity molecular_function owl:Class GO:0018321 biolink:NamedThing protein glucuronylation The modification of a protein by amino acid glucuronylation, the addition of a glucuronate group, the uronic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl protein amino acid glucuronylation biological_process owl:Class GO:0050626 biolink:NamedThing trimethylamine-N-oxide reductase (cytochrome c) activity Catalysis of the reaction: trimethylamine + 2 (ferricytochrome c)-subunit + H2O = trimethylamine-N-oxide + 2 (ferrocytochrome c)-subunit + 2 H+. tmpzr1t_l9r_go_relaxed.owl TOR activity|TMAO reductase activity|trimethylamine:cytochrome c oxidoreductase activity RHEA:24236|Wikipedia:Trimethylamine_N-oxide_reductase|MetaCyc:1.7.2.3-RXN|EC:1.7.2.3 molecular_function owl:Class GO:0097095 biolink:NamedThing frontonasal suture morphogenesis The process in which the frontonasal suture, between frontal and nasal bones, is generated and organized. tmpzr1t_l9r_go_relaxed.owl nasofrontal suture morphogenesis pr 2011-07-05T02:57:46Z biological_process owl:Class GO:0050065 biolink:NamedThing lysine-pyruvate 6-transaminase activity Catalysis of the reaction: L-lysine + pyruvate = L-alanine + L-allysine. tmpzr1t_l9r_go_relaxed.owl lysine--pyruvate 6-aminotransferase activity|Lys-AT|lysine-pyruvate aminotransferase activity|L-lysine:pyruvate aminotransferase activity MetaCyc:LYSINE--PYRUVATE-6-AMINOTRANSFERASE-RXN|MetaCyc:PWY-5324|RHEA:19393|EC:2.6.1.71|KEGG_REACTION:R00453 molecular_function owl:Class GO:0002436 biolink:NamedThing immune complex clearance by monocytes and macrophages The process of immune complex clearance by monocytes or macrophages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002815 biolink:NamedThing biosynthetic process of antibacterial peptides active against Gram-positive bacteria The chemical reactions and pathways resulting in the formation of an antibacterial peptide with activity against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050333 biolink:NamedThing thiamin-triphosphatase activity Catalysis of the reaction: H(2)O + thiamine triphosphate = H(+) + phosphate + thiamine diphosphate. tmpzr1t_l9r_go_relaxed.owl thiamine-triphosphatase activity|ThTPase activity|thiamine-triphosphate phosphohydrolase activity EC:3.6.1.28|Reactome:R-HSA-965067|KEGG_REACTION:R00618|MetaCyc:THIAMIN-TRIPHOSPHATASE-RXN|RHEA:11744 GO:0048253 molecular_function owl:Class GO:0050414 biolink:NamedThing formimidoylaspartate deiminase activity Catalysis of the reaction: N-formimidoyl-L-aspartate + H2O = N-formyl-L-aspartate + NH3. tmpzr1t_l9r_go_relaxed.owl N-formimidoyl-L-aspartate iminohydrolase activity|formiminoaspartate deiminase activity MetaCyc:FORMIMINOASPARTATE-DEIMINASE-RXN|RHEA:13661|EC:3.5.3.5 molecular_function owl:Class GO:0062147 biolink:NamedThing L-lysine 4-chlorinase activity Catalysis of the reaction: 2-oxoglutarate + chloride + H(+) + L-lysine + O2 = 4-chloro-L-lysine + CO2 + H2O + succinate. tmpzr1t_l9r_go_relaxed.owl RHEA:59884 dph 2019-09-02T17:01:46Z molecular_function owl:Class GO:0031313 biolink:NamedThing extrinsic component of endosome membrane The component of an endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to endosome membrane cellular_component owl:Class GO:0008314 biolink:NamedThing gurken signaling pathway The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to a ligand Gurken. tmpzr1t_l9r_go_relaxed.owl signaling by Gurken|gurken receptor signalling pathway|gurken receptor signaling pathway|gurken-activated signaling pathway biological_process owl:Class GO:0071125 biolink:NamedThing alphaV-beta3 integrin-EGFR complex A protein complex that consists of an alphaV-beta3 integrin complex bound to epidermal growth factor receptor. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-EGFR complex mah 2009-11-13T02:23:18Z cellular_component owl:Class GO:0009884 biolink:NamedThing cytokinin receptor activity Combining with a cytokinin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006408 biolink:NamedThing snRNA export from nucleus The directed movement of snRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl snRNA transport from nucleus to cytoplasm|snRNA export out of nucleus|snRNA export from cell nucleus|snRNA-nucleus export biological_process owl:Class GO:0008542 biolink:NamedThing visual learning Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue. tmpzr1t_l9r_go_relaxed.owl spatial learning biological_process owl:Class GO:0045146 biolink:NamedThing initiation of acetate catabolic process by acetate The activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl initiation of acetate breakdown by acetate|initiation of acetate degradation by acetate biological_process owl:Class GO:0043077 biolink:NamedThing initiation of acetate catabolic process The activation of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl initiation of acetate degradation|initiation of acetate breakdown|initiation of acetate catabolism biological_process owl:Class GO:0045025 biolink:NamedThing mitochondrial degradosome A mitochondrial protein complex with 3' to 5' exoribonuclease activity that participates in intron-independent turnover and processing of mitochondrial transcripts. In humans, the mitochondrial degradosome is a pentameric complex, and in yeast it exists as a heterodimer. tmpzr1t_l9r_go_relaxed.owl mtEXO cellular_component owl:Class GO:0018926 biolink:NamedThing methanesulfonic acid metabolic process The chemical reactions and pathways involving methanesulfonic acid, a strong acid produced by the oxidation of dimethyl sulfide. tmpzr1t_l9r_go_relaxed.owl methanesulphonic acid metabolism|methanesulfonic acid metabolism|methanesulphonic acid metabolic process UM-BBD_pathwayID:msa biological_process owl:Class GO:0047826 biolink:NamedThing D-lysine 5,6-aminomutase activity Catalysis of the reaction: D-lysine = 2,5-diaminohexanoate. tmpzr1t_l9r_go_relaxed.owl D-alpha-lysine mutase activity|adenosylcobalamin-dependent D-lysine 5,6-aminomutase activity|D-2,6-diaminohexanoate 5,6-aminomutase activity EC:5.4.3.4|RHEA:18241|KEGG_REACTION:R02852|MetaCyc:D-LYSINE-56-AMINOMUTASE-RXN molecular_function owl:Class GO:0033300 biolink:NamedThing dehydroascorbic acid transmembrane transporter activity Enables the transfer of dehydroascorbate, 5-(1,2-dihydroxyethyl)furan-2,3,4(5H)-trione, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl dehydroascorbate transporter activity|dehydroascorbic acid transporter activity RHEA:60380|Reactome:R-HSA-198818 molecular_function owl:Class GO:0071441 biolink:NamedThing negative regulation of histone H3-K14 acetylation Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3-K14 acetylation|negative regulation of histone H3K14 acetylation|negative regulation of histone H3 acetylation at K14|down regulation of histone H3-K14 acetylation|inhibition of histone H3-K14 acetylation|downregulation of histone H3-K14 acetylation mah 2009-12-16T03:28:23Z biological_process owl:Class GO:1903264 biolink:NamedThing nitrate reductase activity involved in anaerobic electron transport chain Any nitrate reductase activity that is involved in anaerobic electron transport chain. tmpzr1t_l9r_go_relaxed.owl respiratory nitrate reductase activity involved in anaerobic electron transport chain|nitrite:acceptor oxidoreductase involved in anaerobic electron transport chain|nitrite:(acceptor) oxidoreductase involved in anaerobic electron transport chain|nitrate reductase (acceptor) involved in anaerobic electron transport chain dos 2014-08-07T10:07:07Z molecular_function owl:Class GO:0002603 biolink:NamedThing positive regulation of antigen processing and presentation of polysaccharide antigen via MHC class II Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of polysaccharide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl up-regulation of antigen processing and presentation of polysaccharide antigen via MHC class II|activation of antigen processing and presentation of polysaccharide antigen via MHC class II|stimulation of antigen processing and presentation of polysaccharide antigen via MHC class II|up regulation of antigen processing and presentation of polysaccharide antigen via MHC class II|upregulation of antigen processing and presentation of polysaccharide antigen via MHC class II|positive regulation of polysaccharide antigen processing and presentation via MHC class II biological_process owl:Class GO:0002601 biolink:NamedThing regulation of antigen processing and presentation of polysaccharide antigen via MHC class II Any process that modulates the frequency, rate, or extent of antigen processing and presentation of polysaccharide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl regulation of polysaccharide antigen processing and presentation via MHC class II biological_process owl:Class GO:0120173 biolink:NamedThing regulation of actin filament bundle convergence involved in mitotic contractile ring assembly Any process that modulates the frequency, rate or extent of actin filament bundle convergence involved in mitotic contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl krc 2018-05-31T18:08:01Z biological_process owl:Class GO:0034885 biolink:NamedThing gamma-N-formylaminovinylacetate hydrolase activity Catalysis of the reaction: gamma-N-formylaminovinylacetate + H2O = gamma-aminovinylacetate + HCOOH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1350 molecular_function owl:Class GO:0150020 biolink:NamedThing basal dendrite arborization The process in which the anatomical structures of a dendritic tree are generated on the basal neuron side and organized into dendritic branches. tmpzr1t_l9r_go_relaxed.owl bc 2017-12-22T11:32:31Z biological_process owl:Class GO:0045429 biolink:NamedThing positive regulation of nitric oxide biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide. tmpzr1t_l9r_go_relaxed.owl up regulation of nitric oxide biosynthetic process|up-regulation of nitric oxide biosynthetic process|activation of nitric oxide biosynthetic process|stimulation of nitric oxide biosynthetic process|upregulation of nitric oxide biosynthetic process|positive regulation of nitric oxide biosynthesis|positive regulation of nitric oxide synthesis|positive regulation of nitric oxide formation|positive regulation of nitric oxide anabolism biological_process owl:Class GO:1990322 biolink:NamedThing collagen type XXIII trimer A collagen homotrimer of alpha1(XXIII) chains; type XXIII collagen triple helices span the plasma membrane. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T22:01:00Z cellular_component owl:Class GO:0033999 biolink:NamedThing chondroitin B lyase activity Catalysis of the reaction: dermatan sulfate = n 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate. This reaction is the eliminative cleavage of dermatan sulfate containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucurosonyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups to yield a 4,5-unsaturated dermatan-sulfate disaccharide (DeltaUA-GalNAC-4S). Chondroitin sulfate B is also known as dermatan sulfate. tmpzr1t_l9r_go_relaxed.owl ChnB|chonB|dermatan sulfate lyase activity|chondroitinase B activity MetaCyc:4.2.2.19-RXN|EC:4.2.2.19 molecular_function owl:Class GO:0102415 biolink:NamedThing quercetin gentiobioside 1,6-glucosyltransferase activity Catalysis of the reaction: quercetin-3-gentiobioside + UDP-alpha-D-glucose <=> quercetin-3-gentiotrioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13798 molecular_function owl:Class GO:0021563 biolink:NamedThing glossopharyngeal nerve development Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion. tmpzr1t_l9r_go_relaxed.owl CN IX development|cranial nerve IX development|cranial nerve 9 development biological_process owl:Class GO:0102795 biolink:NamedThing 1-naphthaldehyde:oxygen oxidoreductase activity Catalysis of the reaction: 1-naphthaldehyde + O2 + H2O = H+ + 1-naphthoate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl EC:1.2.3.9|MetaCyc:RXN-8090 molecular_function owl:Class GO:0051968 biolink:NamedThing positive regulation of synaptic transmission, glutamatergic Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate. tmpzr1t_l9r_go_relaxed.owl stimulation of synaptic transmission, glutamatergic|upregulation of synaptic transmission, glutamatergic|up regulation of synaptic transmission, glutamatergic|activation of synaptic transmission, glutamatergic|up-regulation of synaptic transmission, glutamatergic biological_process owl:Class GO:0010352 biolink:NamedThing lithium ion export across the plasma membrane The directed movement of lithium ion out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl lithium ion efflux|lithium export|lithium ion export biological_process owl:Class GO:0019463 biolink:NamedThing glycine catabolic process to creatine The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine. tmpzr1t_l9r_go_relaxed.owl glycine breakdown to creatine|glycine degradation to creatine MetaCyc:GLYCGREAT-PWY biological_process owl:Class GO:0006600 biolink:NamedThing creatine metabolic process The chemical reactions and pathways involving creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle. tmpzr1t_l9r_go_relaxed.owl creatine metabolism biological_process owl:Class GO:0070415 biolink:NamedThing trehalose metabolism in response to cold stress The chemical reactions and pathways involving trehalose that occur as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl trehalose metabolic process involved in response to cold stress biological_process owl:Class GO:0102633 biolink:NamedThing flaviolin monooxygenase activity Catalysis of the reaction: flaviolin-2-olate + NADH + H+ + O2 <=> mompain + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15585 molecular_function owl:Class GO:1905189 biolink:NamedThing regulation of metaphase/anaphase transition of meiosis II Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of meiosis II. tmpzr1t_l9r_go_relaxed.owl regulation of meiosis II metaphase/anaphase transition vw 2016-05-10T16:46:49Z biological_process owl:Class GO:0007608 biolink:NamedThing sensory perception of smell The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl sense of smell|scent perception|olfaction|smell perception Wikipedia:Olfaction biological_process owl:Class GO:0070877 biolink:NamedThing microprocessor complex A protein complex that binds to heme and to pri-miRNAs, and is required for the formation of a pre-microRNA (pre-miRNA), the initial step of microRNA (miRNA) biogenesis. The complex is composed of the double-stranded-RNA-specific RNase Drosha (also called RNASEN) and the RNA-binding protein DGCR8 (heme-free or heme-bound forms). Within the complex, DGCR8 function as a molecular anchor necessary for the recognition of pri-miRNA at dsRNA-ssRNA junction and directs RNASEN/Drosha to cleave the 3' and 5' strands of a stem-loop to release hairpin-shaped pre-miRNAs. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-20T03:56:26Z cellular_component owl:Class GO:1905741 biolink:NamedThing calcium export from the mitochondrion involved in positive regulation of presynaptic cytosolic calcium concentration Any mitochondrial calcium release that is involved in positive regulation of presynaptic cytosolic calcium concentration. tmpzr1t_l9r_go_relaxed.owl calcium ion transmembrane export from mitochondrion involved in positive regulation of presynaptic cytosolic calcium concentration|mitochondrial calcium release involved in positive regulation of presynaptic cytosolic calcium concentration dos 2016-12-06T10:05:01Z biological_process owl:Class GO:0030527 biolink:NamedThing structural constituent of chromatin The action of a molecule that contributes to the structural integrity of chromatin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090357 biolink:NamedThing regulation of tryptophan metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl regulation of tryptophan metabolism tb 2010-06-29T02:38:48Z biological_process owl:Class GO:0098975 biolink:NamedThing postsynapse of neuromuscular junction The postsynapse of a neuromuscular junction. In vertebrate muscles this includes the motor end-plate, consisting of postjunctional folds of the sarcolemma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006070 biolink:NamedThing octanol metabolic process The chemical reactions and pathways involving octanol, the 8-carbon alcohol with the formula C8H17OH. tmpzr1t_l9r_go_relaxed.owl octanol metabolism biological_process owl:Class GO:0007121 biolink:NamedThing bipolar cellular bud site selection The process of defining subsequent sites of bud emergence such that budding takes place at alternating poles of a budding cell. tmpzr1t_l9r_go_relaxed.owl bipolar bud site selection|bipolar budding|polar budding biological_process owl:Class GO:1905578 biolink:NamedThing regulation of ERBB3 signaling pathway Any process that modulates the frequency, rate or extent of ERBB3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of ERBB3 signalling pathway|regulation of HER3 signaling pathway|regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway als 2016-10-19T11:46:55Z biological_process owl:Class GO:0061332 biolink:NamedThing Malpighian tubule bud morphogenesis The morphogenetic process in which a bud forms from the embryonic hindgut tube to form the Malpighian tubule. A bud is a protrusion that forms from the tube by localized changes in cell shape and position. tmpzr1t_l9r_go_relaxed.owl Malpighian tubule formation dph 2010-09-28T01:39:32Z biological_process owl:Class GO:0060572 biolink:NamedThing morphogenesis of an epithelial bud The morphogenetic process in which a bud forms from an epithelial sheet. A bud is a protrusion that forms form the sheet by localized folding. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-30T09:38:35Z biological_process owl:Class GO:2001176 biolink:NamedThing regulation of mediator complex assembly Any process that modulates the frequency, rate or extent of mediator complex assembly. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-02T11:22:18Z biological_process owl:Class GO:1904053 biolink:NamedThing positive regulation of protein targeting to vacuole involved in autophagy Any process that activates or increases the frequency, rate or extent of protein targeting to vacuole involved in autophagy. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein targeting to vacuole involved in autophagy|activation of protein targeting to vacuole involved in autophagy|upregulation of protein targeting to vacuole involved in autophagy|up regulation of protein targeting to vacuole involved in autophagy An example of this is SMURF1 in human (UniProt symbol Q9HCE7) in PMID:22020285 (inferred from mutant phenotype). pad 2015-03-17T13:54:27Z biological_process owl:Class GO:0102986 biolink:NamedThing trehalose synthase activity Catalysis of the reaction: an NDP-alpha-D-glucose + D-glucopyranose <=> alpha,alpha-trehalose + H+ + a nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:47416|MetaCyc:RXN-9603|EC:2.4.1.245 molecular_function owl:Class GO:0008087 biolink:NamedThing light-activated voltage-gated calcium channel complex A protein complex that forms a transmembrane channel through which calcium ions may cross a cell membrane in response to changes in membrane potential generated in response to a light stimulus. tmpzr1t_l9r_go_relaxed.owl light-activated voltage gated calcium channel complex|light-activated voltage-dependent calcium channel complex|light-activated voltage-sensitive calcium channel complex cellular_component owl:Class GO:1900445 biolink:NamedThing positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus Any process that activates or increases the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|activation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|upregulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus|up-regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus di 2012-04-25T05:56:35Z biological_process owl:Class GO:0046322 biolink:NamedThing negative regulation of fatty acid oxidation Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid oxidation. tmpzr1t_l9r_go_relaxed.owl inhibition of fatty acid oxidation|down-regulation of fatty acid oxidation|down regulation of fatty acid oxidation|downregulation of fatty acid oxidation biological_process owl:Class GO:0072759 biolink:NamedThing cellular response to topoisomerase inhibitor Any process that results in a change in state or activity of a (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a topoisomerase inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:38:08Z biological_process owl:Class GO:0072758 biolink:NamedThing response to topoisomerase inhibitor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a topoisomerase inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:34:51Z biological_process owl:Class GO:1904282 biolink:NamedThing regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I Any process that modulates the frequency, rate or extent of antigen processing and presentation of endogenous peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl regulation of antigen processing, endogenous antigen via major histocompatibility complex class I|regulation of antigen presentation, endogenous peptide antigen|regulation of antigen processing, endogenous antigen via MHC class I|regulation of endogenous peptide antigen processing and presentation via MHC class I rl 2015-06-04T12:05:28Z biological_process owl:Class GO:0021505 biolink:NamedThing neural fold folding The process of folding the neuroepithelium around the medial hinge point to create the neural elevations, and around the lateral hinge points to produce convergence of the folds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003185 biolink:NamedThing sinoatrial valve morphogenesis The process in which the structure of the sinoatrial valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl SA valve morphogenesis dph 2009-10-08T12:04:52Z biological_process owl:Class GO:0004845 biolink:NamedThing uracil phosphoribosyltransferase activity Catalysis of the reaction: diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil. tmpzr1t_l9r_go_relaxed.owl UMP:diphosphate phospho-alpha-D-ribosyltransferase activity|UMP pyrophosphorylase activity|UMP diphosphorylase activity|UPRTase activity|uridylic pyrophosphorylase activity|uridine 5'-phosphate pyrophosphorylase activity|uridylate pyrophosphorylase activity|UMP:pyrophosphate phosphoribosyltransferase activity|uridine monophosphate pyrophosphorylase activity MetaCyc:URACIL-PRIBOSYLTRANS-RXN|RHEA:13017|KEGG_REACTION:R00966|EC:2.4.2.9 molecular_function owl:Class GO:1904630 biolink:NamedThing cellular response to diterpene Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diterpene stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-28T13:52:43Z biological_process owl:Class GO:1904629 biolink:NamedThing response to diterpene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diterpene stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-28T13:52:37Z biological_process owl:Class GO:0033650 biolink:NamedThing host cell mitochondrion A semiautonomous, self replicating organelle as found in host cells that occurs in varying numbers, shapes, and sizes in the cell cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host mitochondria cellular_component owl:Class GO:0070939 biolink:NamedThing Dsl1/NZR complex A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In Saccharomyces cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p. tmpzr1t_l9r_go_relaxed.owl NZR complex|Dsl1p complex|CATCHR family complex See also the molecular function term 'acetolactate synthase activity ; GO:0003984'. mah 2009-09-22T03:41:38Z cellular_component owl:Class GO:0005785 biolink:NamedThing signal recognition particle receptor complex A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex. tmpzr1t_l9r_go_relaxed.owl SR complex|docking protein complex cellular_component owl:Class GO:0061795 biolink:NamedThing Golgi lumen acidification Any process that reduces the pH of the Golgi lumen, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-05T08:42:40Z biological_process owl:Class GO:0034967 biolink:NamedThing Set3 complex A histone deacetylase complex that is involved in transcriptional regulation. In S. cerevisiae, this complex consists of Set3p, Snt1p, Hos4p, Sif2p, Cpr1p, Hos2p, and Hst1p. tmpzr1t_l9r_go_relaxed.owl SET3C|HDAC3 complex cellular_component owl:Class GO:0120245 biolink:NamedThing terminal acetylenic compound catabolic process The chemical reactions and pathways resulting in the breakdown of a terminal acetylenic compound, a compound which contains a terminal alkyne moiety in which a carbon of the carbon-carbon triple bond (aka C#C) moiety is attached to a hydrogen atom. tmpzr1t_l9r_go_relaxed.owl terminal alkyne substituted compound degradation|terminal alkyne substituted compound catabolism|terminal alkyne substituted compound catabolic process|terminal alkyne substituted compound breakdown https://github.com/geneontology/go-ontology/issues/19842 krc 2020-08-17T22:48:58Z biological_process owl:Class GO:0120244 biolink:NamedThing terminal acetylenic compound metabolic process The chemical reactions and pathways involving a terminal acetylenic compound, involving a terminal acetylenic compound, a compound which contains a terminal alkyne moiety in which which a carbon of the carbon-carbon triple bond (aka C#C) moiety is attached to a hydrogen atom. tmpzr1t_l9r_go_relaxed.owl terminal alkyne substituted compound metabolic process|terminal alkyne substituted compound metabolism https://github.com/geneontology/go-ontology/issues/19842 krc 2020-08-17T22:41:12Z biological_process owl:Class GO:0018617 biolink:NamedThing 4-aminobenzenesulfonate 3,4-dioxygenase (deaminating) activity Catalysis of the reaction: 4-aminobenzenesulfonate + 2 H+ + O2 + 2 e- = NH3 + 4-sulfocatechol. tmpzr1t_l9r_go_relaxed.owl 4-aminobenzenesulphonate 3,4-dioxygenase (deaminating) activity UM-BBD_reactionID:r0580|EC:1.14.12.- molecular_function owl:Class GO:0006003 biolink:NamedThing fructose 2,6-bisphosphate metabolic process The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase. tmpzr1t_l9r_go_relaxed.owl fructose 2,6-bisphosphate metabolism biological_process owl:Class GO:0043561 biolink:NamedThing regulation of translational initiation in response to osmotic stress Any process that modulates the frequency, rate or extent of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051683 biolink:NamedThing establishment of Golgi localization The directed movement of the Golgi to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of Golgi localisation|establishment of Golgi apparatus localization|establishment of Golgi body localization biological_process owl:Class GO:0006789 biolink:NamedThing bilirubin conjugation The chemical reactions and pathways resulting in the formation of bilirubin monoglucuronide or bilirubin diglucuronide, water-soluble derivatives of bilirubin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102048 biolink:NamedThing indole-3-acetyl-isoleucine synthetase activity Catalysis of the reaction: indole-3-acetate + L-isoleucine + ATP(4-) <=> H+ + indole-3-acetyl-isoleucine + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10430 molecular_function owl:Class GO:0070076 biolink:NamedThing histone lysine demethylation The modification of a histone by the removal of a methyl group from a lysine residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903938 biolink:NamedThing cellular response to acrylamide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acrylamide stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-12T22:00:34Z biological_process owl:Class GO:1901869 biolink:NamedThing ecgonine methyl ester biosynthetic process The chemical reactions and pathways resulting in the formation of ecgonine methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonine methyl ester anabolism|ecgonine methyl ester biosynthesis|ecgonine methyl ester synthesis|ecgonine methyl ester formation ms 2013-02-04T11:58:25Z biological_process owl:Class GO:1901867 biolink:NamedThing ecgonine methyl ester metabolic process The chemical reactions and pathways involving ecgonine methyl ester. tmpzr1t_l9r_go_relaxed.owl ecgonine methyl ester metabolism ms 2013-02-04T11:58:14Z biological_process owl:Class GO:2000587 biolink:NamedThing negative regulation of platelet-derived growth factor receptor-beta signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of platelet-derived growth factor receptor-beta signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of PDGF receptor-beta signaling pathway|negative regulation of PDGFR-beta signaling pathway|negative regulation of betaPDGF receptor signaling pathway|negative regulation of platelet-derived growth factor receptor-beta signalling pathway bf 2011-04-07T03:27:54Z biological_process owl:Class GO:0010290 biolink:NamedThing chlorophyll catabolite transmembrane transporter activity Enables the directed movement of chlorophyll catabolites such as non-fluorescent chlorophyll catabolites (NCCs), from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033128 biolink:NamedThing negative regulation of histone phosphorylation Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001110 biolink:NamedThing negative regulation of lens epithelial cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of lens epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-30T02:04:57Z biological_process owl:Class GO:0006251 biolink:NamedThing dCDP catabolic process The chemical reactions and pathways resulting in the breakdown of dCDP, deoxycytidine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl dCDP degradation|dCDP breakdown|dCDP catabolism biological_process owl:Class GO:0036412 biolink:NamedThing acetyl-CoA:oxalate CoA-transferase Catalysis of the reaction: acetyl-CoA + oxalate = acetate + oxalyl-CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:37883 bf 2013-08-22T13:43:25Z molecular_function owl:Class GO:1990692 biolink:NamedThing trans-Golgi-derived vesicle fusion with Golgi medial cisterna membrane The joining of the lipid bilayer membrane around a trans-Golgi-derived vesicle to the lipid bilayer membrane around the medial-Golgi cisterna. Such vesicles include COPI-coated transport vesicles involved in retrograde transport. tmpzr1t_l9r_go_relaxed.owl trans-Golgi-derived vesicle fusion with medial-Golgi cisterna membrane bhm 2015-03-12T09:54:02Z biological_process owl:Class GO:0051890 biolink:NamedThing regulation of cardioblast differentiation Any process that modulates the frequency, rate or extent of cardioblast differentiation, the process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003876 biolink:NamedThing AMP deaminase activity Catalysis of the reaction: AMP + H2O = IMP + NH3. tmpzr1t_l9r_go_relaxed.owl AMP aminase activity|5-AMP deaminase activity|adenyl deaminase activity|5-adenylic acid deaminase activity|5-adenylate deaminase activity|adenosine 5-monophosphate deaminase activity|AMP aminohydrolase activity|adenylic deaminase activity|adenylate deaminase reaction|adenylate aminohydrolase activity|adenylate desaminase activity|adenosine 5-phosphate aminohydrolase activity|myoadenylate deaminase activity|adenylic acid deaminase activity|adenylate deaminase activity|adenosine monophosphate deaminase activity RHEA:14777|MetaCyc:AMP-DEAMINASE-RXN|Reactome:R-HSA-76590|EC:3.5.4.6 molecular_function owl:Class GO:0047623 biolink:NamedThing adenosine-phosphate deaminase activity Catalysis of the reaction: an adenosine-phosphate + H20 = an inosine phosphate + NH3. Catalyzes the deamination of AMP, ADP or ATP. tmpzr1t_l9r_go_relaxed.owl adenosine (phosphate) deaminase activity|adenine nucleotide deaminase activity|adenosine-phosphate aminohydrolase activity MetaCyc:ADENOSINE-PHOSPHATE-DEAMINASE-RXN|EC:3.5.4.17 Consider instead annotating to one of the more specific terms: AMP deaminase activity ; GO:0003876, ADP deaminase activity ; GO:0047629, or ATP deaminase activity ; GO:0047692. molecular_function owl:Class GO:0009257 biolink:NamedThing 10-formyltetrahydrofolate biosynthetic process The chemical reactions and pathways resulting in the formation of 10-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl 10-formyltetrahydrofolate anabolism|10-formyltetrahydrofolate synthesis|10-formyl-THF biosynthesis|10-formyltetrahydrofolate biosynthesis|10-formyltetrahydrofolate formation|10-formyl-THF biosynthetic process MetaCyc:1CMET2-PWY|MetaCyc:PWY-3841 biological_process owl:Class GO:0009256 biolink:NamedThing 10-formyltetrahydrofolate metabolic process The chemical reactions and pathways involving 10-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl 10-formyltetrahydrofolate metabolism|10-formyl-THF metabolic process|10-formyl-THF metabolism biological_process owl:Class GO:0036163 biolink:NamedThing 3-hexaprenyl-4-hydroxy-5-methoxybenzoic acid decarboxylase activity Catalysis of the reaction: 3-hexaprenyl-4-hydroxy-5-methoxybenzoic acid -> 2-hexaprenyl-6-methoxyphenol + CO2. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R06866|RHEA:44768 bf 2012-03-26T01:49:54Z molecular_function owl:Class GO:0018510 biolink:NamedThing phloroglucinol reductase activity Catalysis of the reaction: dihydrophloroglucinol + NADP(+) = H(+) + NADPH + phloroglucinol. tmpzr1t_l9r_go_relaxed.owl dihydrophloroglucinol:NADP+ oxidoreductase activity UM-BBD_reactionID:r0007|EC:1.3.1.57|RHEA:10080|MetaCyc:R5-RXN|KEGG_REACTION:R05308 molecular_function owl:Class GO:0051332 biolink:NamedThing meiotic S phase The cell cycle phase, following G1, during which DNA synthesis takes place as part of a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl S phase of meiotic cell cycle|S-phase of meiotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:1903810 biolink:NamedThing L-histidine import across plasma membrane The directed movement of L-histidine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl histidine import|L-histidine import into cell|L-histidine import dph 2012-10-05T10:20:50Z GO:0090466|GO:0061460 biological_process owl:Class GO:0070983 biolink:NamedThing dendrite guidance The process in which the migration of a dendrite is directed to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl dendritic guidance mah 2009-10-27T03:53:23Z biological_process owl:Class GO:0018578 biolink:NamedThing protocatechuate 3,4-dioxygenase activity Catalysis of the reaction: 3,4-dihydroxybenzoate + O2 = 3-carboxy-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl protocatechuic 3,4-oxygenase activity|protocatechuate:oxygen 3,4-oxidoreductase (decyclizing)|protocatechuic acid oxidase activity|protocatechuate oxygenase activity|protocatechuic 3,4-dioxygenase activity EC:1.13.11.3|MetaCyc:PROTOCATECHUATE-34-DIOXYGENASE-RXN|UM-BBD_reactionID:r0143|RHEA:10084 molecular_function owl:Class GO:1990248 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to DNA damage Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of DNA damage. tmpzr1t_l9r_go_relaxed.owl pg 2013-12-04T13:28:04Z biological_process owl:Class GO:0099047 biolink:NamedThing clearance of foreign intracellular RNA A defense process that protects an organism from invading foreign RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042613 biolink:NamedThing MHC class II protein complex A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902662 biolink:NamedThing regulation of peptidyl-L-cysteine S-palmitoylation Any process that modulates the frequency, rate or extent of peptidyl-L-cysteine S-palmitoylation. tmpzr1t_l9r_go_relaxed.owl regulation of peptidyl-S-palmitoyl-L-cysteine anabolism from peptidyl-cysteine|regulation of peptidyl-S-palmitoyl-L-cysteine synthesis from peptidyl-cysteine|regulation of peptidyl-S-palmitoyl-L-cysteine formation from peptidyl-cysteine|regulation of peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine|regulation of peptidyl-cysteine S-palmitoylation mm2 2014-01-29T11:33:09Z biological_process owl:Class GO:0102472 biolink:NamedThing eriodictyol 2-hydroxylase activity Catalysis of the reaction: eriodictyol + NADPH + O2 + 2 H+ <=> 2-hydroxyeriodictyol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14077|RHEA:57596 molecular_function owl:Class GO:0034146 biolink:NamedThing toll-like receptor 5 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 5. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 5 signalling pathway|TLR5 signaling pathway biological_process owl:Class GO:0052592 biolink:NamedThing oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulphur protein as acceptor EC:1.17.7.- molecular_function owl:Class GO:0015476 biolink:NamedThing hemaglutinin autotransporter activity Enables the transfer of hemaglutinin from the periplasm to the external milieu; the hemaglutinin and the porin are the N- and C-terminal regions of the same protein, respectively. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062060 biolink:NamedThing NuA4 histone acetyltransferase complex binding Binding to a NuA4 histone acetyltransferase complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:51:45Z molecular_function owl:Class GO:1902152 biolink:NamedThing positive regulation of response to DNA integrity checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to DNA integrity checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl activation of response to DNA integrity checkpoint signaling|upregulation of DNA integrity checkpoint effector process|up-regulation of response to signal involved in DNA integrity checkpoint|activation of response to signal involved in DNA integrity checkpoint|up regulation of DNA integrity checkpoint effector process|up regulation of response to signal involved in DNA integrity checkpoint|up regulation of response to DNA integrity checkpoint signaling|positive regulation of DNA integrity checkpoint effector process|up-regulation of response to DNA integrity checkpoint signaling|up-regulation of DNA integrity checkpoint effector process|upregulation of response to DNA integrity checkpoint signaling|positive regulation of response to signal involved in DNA integrity checkpoint|upregulation of response to signal involved in DNA integrity checkpoint|activation of DNA integrity checkpoint effector process jl 2013-05-21T15:44:31Z biological_process owl:Class GO:0061728 biolink:NamedThing GDP-mannose biosynthetic process from mannose The chemical reactions and pathways resulting in the formation of GDP-mannose from mannose. tmpzr1t_l9r_go_relaxed.owl dph 2015-07-24T14:44:04Z biological_process owl:Class GO:0098718 biolink:NamedThing serine import across plasma membrane The directed movement of serine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl serine import into cell dph 2012-12-06T14:55:29Z GO:0061491 biological_process owl:Class GO:0031923 biolink:NamedThing pyridoxine transport The directed movement of pyridoxine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102304 biolink:NamedThing sesquithujene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> 7-epi-sesquithujene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12838|EC:4.2.3.102|RHEA:31991 molecular_function owl:Class GO:0007440 biolink:NamedThing foregut morphogenesis The process in which the anatomical structures of the foregut are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016052 biolink:NamedThing carbohydrate catabolic process The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl single-organism carbohydrate catabolic process|catabolic carbohydrate metabolism|carbohydrate catabolism|catabolic carbohydrate metabolic process|carbohydrate degradation|carbohydrate breakdown|multicellular organismal carbohydrate catabolic process jl 2012-10-23T16:34:39Z GO:0044276|GO:0044724|GO:0006095 biological_process owl:Class GO:1900278 biolink:NamedThing positive regulation of proteinase activated receptor activity Any process that activates or increases the frequency, rate or extent of proteinase activated receptor activity. tmpzr1t_l9r_go_relaxed.owl activation of proteinase activated receptor activity|up regulation of proteinase activated receptor activity|upregulation of proteinase activated receptor activity|up-regulation of proteinase activated receptor activity rl 2012-04-04T01:31:37Z biological_process owl:Class GO:0060637 biolink:NamedThing positive regulation of lactation by mesenchymal-epithelial cell signaling The process that increases the rate, frequency, or extent of lactation as a result of the secretion of a signal from the mammary fat and its reception by a mammary epithelial cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of lactation by mesenchymal-epithelial cell signalling dph 2009-05-19T03:39:24Z biological_process owl:Class GO:0009380 biolink:NamedThing excinuclease repair complex Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and two B subunits bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving behind a stable complex between B subunits and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting gap. tmpzr1t_l9r_go_relaxed.owl excinuclease ABC complex|UvrABC excinuclease complex cellular_component owl:Class GO:0075228 biolink:NamedThing positive regulation of encysted zoospore germination Any process that activates, maintains or increases the frequency, rate or extent of encysted zoospore germination. tmpzr1t_l9r_go_relaxed.owl positive regulation of encysted zoospore germination on or near host biological_process owl:Class GO:0047901 biolink:NamedThing formyl-CoA hydrolase activity Catalysis of the reaction: formyl-CoA + H(2)O = CoA + formate + H(+). tmpzr1t_l9r_go_relaxed.owl formyl coenzyme A hydrolase activity RHEA:19741|KEGG_REACTION:R00521|EC:3.1.2.10|MetaCyc:FORMYL-COA-HYDROLASE-RXN molecular_function owl:Class GO:0042296 biolink:NamedThing ISG15 transferase activity Catalysis of the transfer of ISG15 from one protein to another via the reaction X-ISG15 + Y --> Y-ISG15 + X, where both X-ISG15 and Y-ISG15 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl ISG15 conjugating enzyme activity Reactome:R-HSA-5653754 molecular_function owl:Class GO:0075293 biolink:NamedThing response to host pH environment Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the pH conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host pH environment biological_process owl:Class GO:0047453 biolink:NamedThing ATP-dependent NAD(P)H-hydrate dehydratase activity Catalysis of the reaction: (6S)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine dinucleotide + ATP = ADP + 3 H(+) + NADH + phosphate. tmpzr1t_l9r_go_relaxed.owl (6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase (ATP-hydrolysing)|ATP-dependent H(4)NAD(P)OH dehydratase activity|reduced nicotinamide adenine dinucleotide hydrate dehydratase activity|ATP-dependent H4NAD(P)OH dehydratase activity|(6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase(ATP-hydrolysing; NADH-forming) Reactome:R-HSA-6806967|EC:4.2.1.93|KEGG_REACTION:R00129|RHEA:19017|MetaCyc:4.2.1.93-RXN molecular_function owl:Class GO:0009095 biolink:NamedThing aromatic amino acid family biosynthetic process, prephenate pathway The chemical reactions and pathways resulting in the formation of phenylalanine and tyrosine from other compounds, including chorismate, via the intermediate prephenate. tmpzr1t_l9r_go_relaxed.owl aromatic amino acid family biosynthetic process via prephenate|aromatic amino acid family anabolism, prephenate pathway|aromatic amino acid family biosynthetic process via prephenate(2-)|aromatic amino acid family formation, prephenate pathway|aromatic amino acid family synthesis, prephenate pathway biological_process owl:Class GO:1905118 biolink:NamedThing positive regulation of ribonucleoside-diphosphate reductase activity Any process that activates or increases the frequency, rate or extent of ribonucleoside-diphosphate reductase activity. tmpzr1t_l9r_go_relaxed.owl activation of class II ribonucleoside-diphosphate reductase activity|up regulation of ribonucleotide diphosphate reductase activity|positive regulation of ribonucleoside 5'-diphosphate reductase activity|positive regulation of adenosylcobalamin-dependent ribonucleotide reductase activity|positive regulation of class III ribonucleotide reductase activity|positive regulation of nucleoside diphosphate reductase activity|upregulation of ribonucleotide diphosphate reductase activity|up-regulation of class II ribonucleoside-diphosphate reductase activity|activation of nucleoside diphosphate reductase activity|up regulation of class I ribonucleotide reductase activity|upregulation of class I ribonucleotide reductase activity|activation of ribonucleoside 5'-diphosphate reductase activity|up-regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity|up regulation of class III ribonucleotide reductase activity|upregulation of RNR|up regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity|activation of adenosylcobalamin-dependent ribonucleotide reductase activity|up regulation of purine/pyrimidine nucleoside diphosphate reduction|activation of class II ribonucleotide reductase activity|positive regulation of purine/pyrimidine nucleoside diphosphate reduction|positive regulation of class I ribonucleotide reductase activity|up-regulation of adenosylcobalamin-dependent ribonucleotide reductase activity|positive regulation of class II ribonucleoside-diphosphate reductase activity|positive regulation of ribonucleotide diphosphate reductase activity|activation of aerobic non-heme iron-dependent ribonucleotide reductase activity|up-regulation of class III ribonucleotide reductase activity|up-regulation of class II ribonucleotide reductase activity|positive regulation of RNR|up-regulation of ribonucleoside-diphosphate reductase activity|upregulation of class III ribonucleotide reductase activity|up-regulation of ribonucleoside 5'-diphosphate reductase activity|positive regulation of class II ribonucleotide reductase activity|up-regulation of RNR|up-regulation of class I ribonucleotide reductase activity|activation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity|upregulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity|up regulation of ribonucleoside 5'-diphosphate reductase activity|up-regulation of purine/pyrimidine nucleoside diphosphate reduction|activation of class III ribonucleotide reductase activity|activation of purine/pyrimidine nucleoside diphosphate reduction|upregulation of adenosylcobalamin-dependent ribonucleotide reductase activity|upregulation of ribonucleoside 5'-diphosphate reductase activity|activation of RNR|up regulation of class II ribonucleotide reductase activity|up regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity|up-regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity|positive regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity|upregulation of aerobic non-heme iron-dependent ribonucleotide reductase activity|upregulation of class II ribonucleotide reductase activity|upregulation of class II ribonucleoside-diphosphate reductase activity|upregulation of ribonucleoside-diphosphate reductase activity|activation of ribonucleotide diphosphate reductase activity|up regulation of RNR|up regulation of ribonucleoside-diphosphate reductase activity|up regulation of adenosylcobalamin-dependent ribonucleotide reductase activity|positive regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity|activation of ribonucleoside-diphosphate reductase activity|activation of class I ribonucleotide reductase activity|up regulation of nucleoside diphosphate reductase activity|up-regulation of nucleoside diphosphate reductase activity|up-regulation of ribonucleotide diphosphate reductase activity|upregulation of purine/pyrimidine nucleoside diphosphate reduction|upregulation of nucleoside diphosphate reductase activity|up regulation of class II ribonucleoside-diphosphate reductase activity An example of this is DRE2 in Saccharomyces cerevisiae (UniProt ID P36152) in PMID:24733891 (inferred from mutant phenotype). bhm 2016-04-08T08:06:35Z biological_process owl:Class GO:1903244 biolink:NamedThing positive regulation of cardiac muscle hypertrophy in response to stress Any process that activates or increases the frequency, rate or extent of cardiac muscle hypertrophy in response to stress. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiac muscle hypertrophy in response to stress|up regulation of cardiac muscle hypertrophy in response to stress|activation of cardiac muscle hypertrophy in response to stress|upregulation of cardiac muscle hypertrophy in response to stress rl 2014-08-01T16:31:48Z biological_process owl:Class GO:1902432 biolink:NamedThing protein localization to division septum A process in which a protein is transported to, or maintained in, a location within a division septum. tmpzr1t_l9r_go_relaxed.owl protein localization in division septum|protein localisation to division septum|protein localisation in division septum mah 2013-09-30T14:29:51Z biological_process owl:Class GO:0061385 biolink:NamedThing fibroblast proliferation involved in heart morphogenesis The multiplication or reproduction of fibroblasts, resulting in the expansion of a fibroblast population that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2011-02-10T01:41:59Z biological_process owl:Class GO:0034498 biolink:NamedThing early endosome to Golgi transport The directed movement of substances from early endosomes to the Golgi. tmpzr1t_l9r_go_relaxed.owl PGE to Golgi transport|post-Golgi endosome to Golgi transport biological_process owl:Class GO:0061206 biolink:NamedThing mesonephros morphogenesis The process in which the anatomical structures of the mesonephros are generated and organized. tmpzr1t_l9r_go_relaxed.owl Wolffian body morphogenesis dph 2010-08-17T03:11:10Z biological_process owl:Class GO:0008011 biolink:NamedThing structural constituent of pupal chitin-based cuticle The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of a pupa. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl structural constituent of pupal cuticle molecular_function owl:Class GO:0010877 biolink:NamedThing lipid transport involved in lipid storage The directed movement of lipids into cells that is part of their accumulation and maintenance. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004765 biolink:NamedThing shikimate kinase activity Catalysis of the reaction: ATP + shikimate = 3-phosphoshikimate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl shikimate kinase II|shikimate kinase (phosphorylating)|ATP:shikimate 3-phosphotransferase activity EC:2.7.1.71|RHEA:13121|KEGG_REACTION:R02412|MetaCyc:SHIKIMATE-KINASE-RXN molecular_function owl:Class GO:1900895 biolink:NamedThing positive regulation of tridecane metabolic process Any process that activates or increases the frequency, rate or extent of tridecane metabolic process. tmpzr1t_l9r_go_relaxed.owl activation of tridecane metabolism|up-regulation of tridecane metabolism|positive regulation of tridecane metabolism|up regulation of tridecane metabolism|upregulation of tridecane metabolic process|up-regulation of tridecane metabolic process|activation of tridecane metabolic process|up regulation of tridecane metabolic process|upregulation of tridecane metabolism tt 2012-06-13T03:15:11Z biological_process owl:Class GO:0010889 biolink:NamedThing regulation of sequestering of triglyceride Any process that modulates the rate, frequency or extent of sequestering of triglyceride. Triglyceride sequestration is the process of binding or confining any triester of glycerol such that it is separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl regulation of triacylglycerol sequestration|regulation of sequestering of triacylglycerol biological_process owl:Class GO:0140161 biolink:NamedThing monocarboxylate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monocarboxylate(out) + Na+(out) = monocarboxylate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl pg 2018-02-05T10:33:55Z molecular_function owl:Class GO:0097491 biolink:NamedThing sympathetic neuron projection guidance The process in which the migration of a sympathetic neuron projection is directed to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl sympathetic neurite guidance|sympathetic neuron process guidance|sympathetic neuronal cell projection guidance|sympathetic neuron protrusion guidance pr 2013-07-10T11:49:21Z biological_process owl:Class GO:0102878 biolink:NamedThing (+)-alpha-barbatene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (+)-alpha-barbatene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8417|RHEA:29499|EC:4.2.3.69 molecular_function owl:Class GO:1990518 biolink:NamedThing single-stranded 3'-5' DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of the DNA helix in the direction 3' to 5'. tmpzr1t_l9r_go_relaxed.owl al 2014-10-22T10:17:40Z molecular_function owl:Class GO:0043138 biolink:NamedThing 3'-5' DNA helicase activity Unwinding a DNA helix in the direction 5' to 3', driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent 3'-5' DNA helicase activity|ATP-dependent 3' to 5' DNA helicase activity|3' to 5' DNA helicase activity Reactome:R-HSA-9613497|Reactome:R-HSA-174438|Reactome:R-HSA-9613498|Reactome:R-HSA-9613490|Reactome:R-HSA-75949|Reactome:R-HSA-9613494|Reactome:R-HSA-167097|Reactome:R-HSA-9684118 GO:0043140 molecular_function owl:Class GO:0097384 biolink:NamedThing cellular lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl cellular lipid anabolism|cellular lipid synthesis|cellular lipid biosynthesis|cellular lipid formation pr 2012-10-16T16:47:09Z biological_process owl:Class GO:0045516 biolink:NamedThing interleukin-19 receptor binding Binding to an interleukin-19 receptor. tmpzr1t_l9r_go_relaxed.owl IL-19|interleukin-19 receptor ligand molecular_function owl:Class GO:1904918 biolink:NamedThing transmembrane L-histidine transport from lysosomal lumen to cytosol The directed movement of L-histidine from the lysosomal lumen across the lysosomal membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl kmv 2016-01-21T16:27:55Z biological_process owl:Class GO:0045269 biolink:NamedThing proton-transporting ATP synthase, central stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the membrane-associated Fo proteins; rotates within the catalytic core during catalysis. tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, central stalk cellular_component owl:Class GO:0009751 biolink:NamedThing response to salicylic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to salicylic acid stimulus|response to salicylate biological_process owl:Class GO:0098743 biolink:NamedThing cell aggregation The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035698 biolink:NamedThing CD8-positive, alpha-beta cytotoxic T cell extravasation The migration of a CD8-positive, alpha-beta cytotoxic T cell from the blood vessels into the surrounding tissue. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-28T03:09:53Z biological_process owl:Class GO:0004417 biolink:NamedThing hydroxyethylthiazole kinase activity Catalysis of the reaction: 5-(2-hydroxyethyl)-4-methylthiazole + ATP = 4-methyl-5-(2-phosphoethyl)-thiazole + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 4-methyl-5-(beta-hydroxyethyl)thiazole kinase activity|hydroxyethylthiazole kinase (phosphorylating)|ATP:4-methyl-5-(2-hydroxyethyl)thiazole 2-phosphotransferase activity KEGG_REACTION:R04448|EC:2.7.1.50|MetaCyc:THIAZOLSYN3-RXN|RHEA:24212 molecular_function owl:Class GO:0062059 biolink:NamedThing FACT complex binding Binding to a FACT complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:49:30Z molecular_function owl:Class GO:0043930 biolink:NamedThing primary ovarian follicle growth involved in primary follicle stage Increase in size of primary follicles including oocyte growth and granulosa and/or theca cell proliferation until more than one layer of granulosa cells is present (preantral follicle) as part of the primary follicle stage of oogenesis. tmpzr1t_l9r_go_relaxed.owl primary ovarian follicle growth during primary follicle stage biological_process owl:Class GO:0050123 biolink:NamedThing N-acylmannosamine 1-dehydrogenase activity Catalysis of the reaction: N-acyl-D-mannosamine + NAD(+) = N-acyl-D-mannosaminolactone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl N-acyl-D-mannosamine:NAD+ 1-oxidoreductase activity|N-acetyl-D-mannosamine dehydrogenase activity|N-acylmannosamine dehydrogenase activity|N-acyl-D-mannosamine dehydrogenase activity MetaCyc:N-ACYLMANNOSAMINE-1-DEHYDROGENASE-RXN|KEGG_REACTION:R02651|EC:1.1.1.233|RHEA:11540 molecular_function owl:Class GO:0006610 biolink:NamedThing ribosomal protein import into nucleus The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. At least some ribosomal proteins, including rpl12, uses the importin 11 pathway as a major route into the nucleus. tmpzr1t_l9r_go_relaxed.owl ribosomal protein transport from cytoplasm to nucleus|ribosomal protein-nucleus import|ribosomal protein import into cell nucleus https://github.com/geneontology/go-annotation/issues/1700 Ribosomal protein rpl12 uses a different import pathway, which is why it has a separate GO term. biological_process owl:Class GO:1990040 biolink:NamedThing sub-surface cisterna Specialization of the hypolemmal cisterna consisting of either single profiles or closely apposed stacks of endoplasmic reticulum in which the lumen is obliterated, lying 10-20 nm beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl sub-surface cisternae NIF_Subcellular:sao128470897 pr 2013-02-11T15:10:47Z cellular_component owl:Class GO:1990039 biolink:NamedThing hypolemmal cisterna Specialized part of the smooth endoplasmic reticulum that closely underlies the plasma membrane, usually within 60 nm or closer. tmpzr1t_l9r_go_relaxed.owl hypolemmal cisternae NIF_Subcellular:sao1634374950 pr 2013-02-11T15:04:56Z cellular_component owl:Class GO:0052652 biolink:NamedThing cyclic purine nucleotide metabolic process The chemical reactions and pathways involving a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue and the base is a purine. tmpzr1t_l9r_go_relaxed.owl cyclic purine nucleotide metabolism 2010-09-23T11:15:59Z biological_process owl:Class GO:0009204 biolink:NamedThing deoxyribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside triphosphate degradation|deoxyribonucleoside triphosphate catabolism|deoxyribonucleoside triphosphate breakdown biological_process owl:Class GO:0061828 biolink:NamedThing apical tubulobulbar complex Actin-based structures involved in establishing close contact between mature spermatids and Sertoli cells at the luminal end of the Sertoli cell. tmpzr1t_l9r_go_relaxed.owl apical TBC dph 2017-01-15T10:41:00Z cellular_component owl:Class GO:0036284 biolink:NamedThing tubulobulbar complex Actin-based structures involved in establishing close contact between Sertoli-Sertoli cells or Sertoli-spermatids in the seminiferous tubules of the testes. tmpzr1t_l9r_go_relaxed.owl TBC bf 2012-07-16T10:26:35Z cellular_component owl:Class GO:0001402 biolink:NamedThing signal transduction involved in filamentous growth Relaying of environmental signals promoting filamentous growth. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade (pseudohyphal growth)|signal transduction during filamentous growth biological_process owl:Class GO:0002079 biolink:NamedThing inner acrosomal membrane The acrosomal membrane region that underlies the acrosomal vesicle and is located toward the sperm nucleus. This region is responsible for molecular interactions allowing the sperm to penetrate the zona pellucida and fuses with the egg plasma membrane. tmpzr1t_l9r_go_relaxed.owl Note that this term is not a descendant of 'organelle inner membrane ; GO:0019866' because the outer acrosomal membrane is a portion of the acrosomal membrane; the latter is a single lipid bilayer. cellular_component owl:Class GO:0097731 biolink:NamedThing 9+0 non-motile cilium A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme). tmpzr1t_l9r_go_relaxed.owl 9+0 immotile cilium|primary cilium|non-motile 9+0 cilium This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons). pr 2016-09-29T14:05:03Z cellular_component owl:Class GO:0050007 biolink:NamedThing isonocardicin synthase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + nocardicin E = S-methyl-5'-thioadenosine + H(+) + isonocardicin A. tmpzr1t_l9r_go_relaxed.owl nocardicin aminocarboxypropyltransferase activity|S-adenosyl-L-methionine:nocardicin-E 3-amino-3-carboxypropyltransferase activity KEGG_REACTION:R03072|EC:2.5.1.38|MetaCyc:ISONOCARDICIN-SYNTHASE-RXN|RHEA:19845 molecular_function owl:Class GO:0010943 biolink:NamedThing NADPH pyrophosphatase activity Catalysis of the reaction: NADPH + H2O = NMNH + ADP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044734 biolink:NamedThing envenomation resulting in positive regulation of acid-sensing ion channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant positive regulation in the activity of an acid-sensing ion channel (ASIC) in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in positive regulation of ASIC channel activity in other organism jl 2012-11-06T16:02:01Z biological_process owl:Class GO:1904563 biolink:NamedThing phosphatidylinositol 5-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylinositol 5-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 5-phosphate anabolism|phosphatidylinositol 5-phosphate biosynthesis|phosphatidylinositol 5-phosphate formation|phosphatidylinositol 5-phosphate synthesis dph 2015-08-18T16:21:50Z biological_process owl:Class GO:0035637 biolink:NamedThing multicellular organismal signaling The transfer of information occurring at the level of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl multicellular organismal signalling bf 2011-01-14T10:13:50Z biological_process owl:Class GO:0052722 biolink:NamedThing fatty acid in-chain hydroxylase activity Catalysis of the reaction: fatty acid + O2 + 2 NADPH + H+ = fatty acid with in-chain hydroxy group + 2 NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12186|RHEA:45084 ai 2011-08-15T01:41:07Z molecular_function owl:Class GO:0005503 biolink:NamedThing all-trans retinal binding Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A. tmpzr1t_l9r_go_relaxed.owl visual yellow binding|trans retinal binding|all-trans retinaldehyde binding|vitamin A binding|xanthopsin molecular_function owl:Class GO:0016918 biolink:NamedThing retinal binding Binding to retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina. tmpzr1t_l9r_go_relaxed.owl violet-sensitive opsin|retinaldehyde binding|red-sensitive opsin|UV-sensitive opsin|opsin|long-wave-sensitive opsin|short-wave-sensitive opsin|blue-sensitive opsin|green-sensitive opsin|vitamin A binding molecular_function owl:Class GO:1902070 biolink:NamedThing positive regulation of sphingolipid mediated signaling pathway Any process that activates or increases the frequency, rate or extent of sphingolipid signaling. tmpzr1t_l9r_go_relaxed.owl up-regulation of sphingolipid signaling pathway|upregulation of sphingolipid mediated signaling pathway|positive regulation of sphingolipid signaling pathway|activation of sphingolipid signaling pathway|up regulation of sphingolipid signaling pathway|upregulation of sphingolipid signaling pathway|activation of sphingolipid mediated signaling pathway|up-regulation of sphingolipid mediated signaling pathway|up regulation of sphingolipid mediated signaling pathway bf 2013-04-18T13:24:56Z biological_process owl:Class GO:1902838 biolink:NamedThing regulation of nuclear migration along microtubule Any process that modulates the frequency, rate or extent of nuclear migration along microtubule. tmpzr1t_l9r_go_relaxed.owl regulation of microtubule-mediated nuclear migration|regulation of nucleus migration|regulation of microtubule-dependent nucleus positioning|regulation of microtubule cytoskeleton-dependent nuclear positioning|regulation of transport of nucleus, microtubule-mediated|regulation of microtubule-dependent nuclear positioning|regulation of nuclear migration, microtubule-mediated|regulation of transport of nucleus by microtubules|regulation of microtubule cytoskeleton-dependent nucleus positioning|regulation of nuclear movement, microtubule-mediated vw 2014-04-01T13:50:23Z biological_process owl:Class GO:0070223 biolink:NamedThing sulfide oxidation, using sulfur dioxygenase A sulfide oxidation process that proceeds via the reaction catalyzed by sulfur dioxygenase. tmpzr1t_l9r_go_relaxed.owl sulphide oxidation, using sulfur dioxygenase MetaCyc:PWY-5285 biological_process owl:Class GO:0000497 biolink:NamedThing DNA template activity Binding to nucleic acid via hydrogen bonds between the bases of a gene product molecule and the bases of a target DNA molecule. tmpzr1t_l9r_go_relaxed.owl base pairing with DNA Note that with respect to annotation, "base pairing" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with DNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function. molecular_function owl:Class GO:0040009 biolink:NamedThing regulation of growth rate Any process that modulates the rate of growth of all or part of an organism. tmpzr1t_l9r_go_relaxed.owl Note that this term and its definition depart from the usual conventions for GO 'regulation' process terms; regulation of rate is not usually distinguished from regulation of extent or frequency, but it makes sense to do so for growth regulation. biological_process owl:Class GO:1990516 biolink:NamedThing ribonucleotide excision repair The pathway by which a ribonucleotide is removed from DNA and replaced by a deoxyribonucleotide. The ribonucleotide is incised by RNase H2, and further excised by an endonuclease. The resulting 1 nt gap is then repaired by DNA polymerase and DNA ligase. tmpzr1t_l9r_go_relaxed.owl al 2014-10-14T12:24:37Z biological_process owl:Class GO:0052577 biolink:NamedThing germacrene-D synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (-)-germacrene D + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(-)-Germacrene D-forming] activity EC:4.2.3.22|KEGG_REACTION:R07648|MetaCyc:RXN-8562|RHEA:12016 ai 2010-08-09T01:39:02Z molecular_function owl:Class GO:0102400 biolink:NamedThing dTDP-3-amino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N,N-dimethyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + dTDP-3-amino-4-dehydro-2,3,6-trideoxy-alpha-D-glucose <=> 2 S-adenosyl-L-homocysteine + dTDP-3-N,N-dimethylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13667 molecular_function owl:Class GO:0102933 biolink:NamedThing GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity Catalysis of the reaction: GDP-4-amino-4,6-dideoxy-alpha-D-mannose + 2-oxoglutarate = GDP-4-dehydro-6-deoxy-alpha-D-mannose + L-glutamate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8953|RHEA:36779|EC:2.6.1.102 molecular_function owl:Class GO:0010100 biolink:NamedThing negative regulation of photomorphogenesis Any process that stops, reduces or prevents photomorphogenesis. tmpzr1t_l9r_go_relaxed.owl down regulation of photomorphogenesis|down-regulation of photomorphogenesis|inhibition of photomorphogenesis|downregulation of photomorphogenesis biological_process owl:Class GO:0002493 biolink:NamedThing lipid antigen assembly with MHC class Ib protein complex The binding of a lipid antigen to the antigen binding groove of an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules, such as those of the CD1 gene family. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045325 biolink:NamedThing peptidyl-tryptophan hydroxylation The hydroxylation of peptidyl-tryptophan, to form peptidyl-L-3-hydroxytryptophan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0322 biological_process owl:Class GO:0042711 biolink:NamedThing maternal behavior Female behaviors associated with the care and rearing of offspring. tmpzr1t_l9r_go_relaxed.owl maternal behaviour biological_process owl:Class GO:0060746 biolink:NamedThing parental behavior A reproductive behavior in which a parent cares for and rears offspring. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T09:05:26Z biological_process owl:Class GO:1990213 biolink:NamedThing negative regulation by symbiont of salicylic acid levels in host Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of salicylic acid levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-09T19:06:19Z biological_process owl:Class GO:0050135 biolink:NamedThing NAD(P)+ nucleosidase activity Catalysis of the reaction: NAD(P)+ + H2O = ADP-ribose(P) + nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide (phosphate) glycohydrolase activity|nicotinamide adenine dinucleotide (phosphate) nucleosidase activity|NAD(P)+ glycohydrolase activity|NAD(P) nucleosidase activity|NAD(P)ase activity|triphosphopyridine nucleotidase activity|NAD(P)(+) nucleosidase activity MetaCyc:NADP+-NUCLEOSIDASE-RXN|EC:3.2.2.6 molecular_function owl:Class GO:0051794 biolink:NamedThing regulation of timing of catagen Any process that modulates the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl regulation of catagen biological_process owl:Class GO:0030254 biolink:NamedThing protein secretion by the type III secretion system The process in which proteins are transferred into the extracellular milieu or directly into host cells by the bacterial type III secretion system; secretion occurs in a continuous process without the distinct presence of periplasmic intermediates and does not involve proteolytic processing of secreted proteins. tmpzr1t_l9r_go_relaxed.owl type III protein secretion system|protein secretion by the T3S|protein secretion by the TTSS|protein secretion by the type III protein secretion system|protein secretion by the T3SS Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular component term 'type III protein secretion system complex ; GO:0030257'. Note that this term is used for annotation of proteins that compose the secretion complex but not the proteins being secreted. biological_process owl:Class GO:0030633 biolink:NamedThing D-alanine family amino acid catabolic process The chemical reactions and pathways resulting in the breakdown of D-alanine and related amino acids. tmpzr1t_l9r_go_relaxed.owl D-alanine family amino acid degradation|D-alanine family amino acid breakdown|D-alanine family amino acid catabolism biological_process owl:Class GO:0071983 biolink:NamedThing exit from reproductive diapause The dormancy process that results in exit from reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-21T04:48:12Z biological_process owl:Class GO:0003392 biolink:NamedThing cell adhesion involved in retrograde extension The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix that contributes to the process of retrograde extension. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:32:06Z biological_process owl:Class GO:1905470 biolink:NamedThing positive regulation of clathrin-coated pit assembly Any process that activates or increases the frequency, rate or extent of clathrin-coated pit assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of coated pit assembly|up-regulation of coated pit formation|positive regulation of coated pit assembly|up regulation of clathrin-coated pit assembly|upregulation of coated pit formation|up-regulation of clathrin-coated pit assembly|activation of clathrin-coated pit assembly|positive regulation of clathrin-coated pit formation|up regulation of coated pit formation|positive regulation of coated pit formation|up regulation of clathrin-coated pit formation|up-regulation of clathrin-coated pit formation|up regulation of coated pit assembly|upregulation of clathrin-coated pit assembly|activation of coated pit formation|upregulation of clathrin-coated pit formation|activation of coated pit assembly|upregulation of coated pit assembly|activation of clathrin-coated pit formation bf 2016-09-20T10:04:53Z biological_process owl:Class GO:0072649 biolink:NamedThing interferon-kappa production The appearance of interferon-kappa due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-kappa production|interferon-kappa secretion|IFNK production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072650 biological_process owl:Class GO:0032606 biolink:NamedThing type I interferon production The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl type I interferon secretion|type I interferon biosynthetic process|interferon type I production|type I IFN production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072641|GO:0045351 biological_process owl:Class GO:0005274 biolink:NamedThing allantoin:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: allantoin(out) + H+(out) = allantoin(in) + H+(in) by secondary active transport. tmpzr1t_l9r_go_relaxed.owl allantoin/allantoate transporter|allantoin uptake transmembrane transporter activity|allantoin permease activity GO:0015206 molecular_function owl:Class GO:0061473 biolink:NamedThing murein tripeptide carboxypeptidase activity Catalysis of the reaction L-Ala-gamma-D-Glu-meso-Dap (murein tripeptide) + H2O = L-Ala-gamma-D-Glu + meso-diaminopimelate. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-06T12:23:39Z molecular_function owl:Class GO:0004181 biolink:NamedThing metallocarboxypeptidase activity Catalysis of the hydrolysis of a single C-terminal amino acid residue from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 Reactome:R-HSA-8955712|Reactome:R-HSA-2022378|Reactome:R-HSA-8866105|Reactome:R-HSA-2022379|Reactome:R-HSA-2028294|Reactome:R-HSA-9023159|Reactome:R-HSA-8852809|Reactome:R-HSA-9023163|EC:3.4.17.- molecular_function owl:Class GO:0140048 biolink:NamedThing manganese ion export across plasma membrane The directed movement of manganese ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl manganese ion export from cell pg 2017-06-23T14:25:00Z biological_process owl:Class GO:1902500 biolink:NamedThing vacuolar HOPS complex Any HOPS complex that is part of a vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar membrane HOPS complex tb 2013-11-14T00:09:50Z cellular_component owl:Class GO:0097509 biolink:NamedThing oxanine DNA N-glycosylase activity DNA N-glycosylase activity acting on deaminated guanine where the resulting base (oxanine) is generated by NO- or HNO2-induced nitrosative deamination. tmpzr1t_l9r_go_relaxed.owl oxanine-DNA glycosylase activity pr 2013-09-26T16:03:58Z molecular_function owl:Class GO:0002448 biolink:NamedThing mast cell mediated immunity Any process involved in the carrying out of an immune response by a mast cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061131 biolink:NamedThing pancreas field specification The process in which a specific region of the gut is delineated into the area in which the pancreas will develop. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T09:39:49Z biological_process owl:Class GO:0008980 biolink:NamedThing propionate kinase activity Catalysis of the reaction: ATP + propanoate = ADP + propanoyl phosphate. tmpzr1t_l9r_go_relaxed.owl PduW|ATP:propanoate phosphotransferase activity|TdcD|propanoate kinase activity EC:2.7.2.15|RHEA:23148 molecular_function owl:Class GO:0050459 biolink:NamedThing ethanolamine-phosphate phospho-lyase activity Catalysis of the reaction: H(2)O + phosphoethanolamine = acetaldehyde + NH(4)(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl O-phosphoethanolamine-phospholyase activity|amino alcohol O-phosphate phospholyase activity|ethanolamine-phosphate phospho-lyase (deaminating)|ethanolamine-phosphate phospho-lyase (deaminating; acetaldehyde-forming)|O-phosphorylethanol-amine phospho-lyase activity EC:4.2.3.2|MetaCyc:ETHANOLAMINE-PHOSPHATE-PHOSPHO-LYASE-RXN|RHEA:17889|Reactome:R-HSA-5696415|KEGG_REACTION:R00748 molecular_function owl:Class GO:0043661 biolink:NamedThing peribacteroid membrane A membrane that surrounds one or more bacteroids (such as nitrogen-fixing bacteroids within legume root nodule cells). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905009 biolink:NamedThing negative regulation of L-lysine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-lysine import into cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of L-lysine import into cell|downregulation of L-lysine import into cell|negative regulation of lysine import|negative regulation of lysine uptake|down regulation of L-lysine import into cell|down-regulation of L-lysine import into cell|inhibition of L-lysine import into cell sl 2016-03-02T00:15:57Z GO:0010806 biological_process owl:Class GO:0021798 biolink:NamedThing forebrain dorsal/ventral pattern formation The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain. tmpzr1t_l9r_go_relaxed.owl forebrain dorsoventral pattern formation|forebrain dorsal-ventral pattern formation biological_process owl:Class GO:0070091 biolink:NamedThing glucagon secretion The regulated release of glucagon from secretory granules in the A (alpha) cells of the pancreas (islets of Langerhans). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035798 biolink:NamedThing 2-alkenal reductase (NADP+) activity Catalysis of the reaction: n-alkanal + NADP+ = alk-2-enal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH:2-alkenal alpha,beta-hydrogenase activity bf 2011-04-14T01:11:07Z molecular_function owl:Class GO:0032440 biolink:NamedThing 2-alkenal reductase [NAD(P)+] activity Catalysis of the reaction: n-alkanal + NAD(P)+ = alk-2-enal + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H-dependent alkenal/one oxidoreductase activity|n-alkanal:NAD(P)+ 2-oxidoreductase activity EC:1.3.1.74 molecular_function owl:Class GO:0018302 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-N1'-histidino tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl-L-N1'-histidino tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-N1'-histidino tetrairon tetrasulphide RESID:AA0284 biological_process owl:Class GO:0010181 biolink:NamedThing FMN binding Binding to flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl flavin mononucleotide binding molecular_function owl:Class GO:0002582 biolink:NamedThing positive regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of antigen (peptide or polysaccharide) via MHC class II. tmpzr1t_l9r_go_relaxed.owl activation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|up-regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|upregulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|up regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|positive regulation of peptide or polysaccharide antigen processing and presentation via MHC class II|stimulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II biological_process owl:Class GO:0016232 biolink:NamedThing HNK-1 sulfotransferase activity Catalysis of the synthesis of the HKK-1 carbohydrate epitope; adds a sulfate group to a precursor, GlcA-beta-(1->3)-Gal-beta-(1->4)-GlcNAc-beta-(1->R), forming sulfo-3GlcA-beta-(1->3)-Gal-beta-(1->4)-GlcNAc-beta-(1->R). tmpzr1t_l9r_go_relaxed.owl HNK-1 sulphotransferase activity Reactome:R-HSA-6786048 molecular_function owl:Class GO:0018699 biolink:NamedThing 1,1,1-trichloroethane reductive dehalogenase activity Catalysis of the reaction: 1,1,1-trichloroethane + 2 H+ + 2 e- = 1,1-dichloroethane + HCl. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r1007 molecular_function owl:Class GO:0071810 biolink:NamedThing regulation of fever generation by regulation of prostaglandin secretion Any process that modulates the rate or extent of fever generation via regulation of the frequency, rate or extent of the regulated release of a prostaglandin from a cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T05:09:27Z biological_process owl:Class GO:0035016 biolink:NamedThing elongation of arista lateral The increase in length of the aristal laterals. The arista is the terminal segment of the antenna and consists of a central core and a series of lateral extensions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045851 biolink:NamedThing pH reduction Any process that reduces the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl acidification biological_process owl:Class GO:0080149 biolink:NamedThing sucrose induced translational repression Any process that stops, prevents or reduces the rate of translation as a result of increase in sucrose level. tmpzr1t_l9r_go_relaxed.owl negative regulation of translation in response to sucrose dhl 2010-03-26T04:13:15Z biological_process owl:Class GO:0099508 biolink:NamedThing voltage-gated ion channel activity involved in regulation of presynaptic membrane potential Voltage-gated ion channel activity, occurring in the presynaptic membrane, involved in regulation of presynaptic membrane potential. This is a key step in synaptic transmission, following the arrival of an action potential at the synapse. tmpzr1t_l9r_go_relaxed.owl voltage-dependent ion channel activity involved in regulation of pre-synaptic membrane potential|voltage gated ion channel activity involved in regulation of presynaptic membrane potential|voltage-dependent ion channel activity involved in regulation of presynaptic membrane potential|voltage-gated ion channel activity involved in regulation of pre-synaptic membrane potential molecular_function owl:Class GO:0102266 biolink:NamedThing tRNA-dihydrouridine20a synthase activity Catalysis of the reaction: a 5,6-dihydrouracil20a in tRNA + NAD(P) <=> H+ + a uracil20a in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.90|MetaCyc:RXN-12475 molecular_function owl:Class GO:0004493 biolink:NamedThing methylmalonyl-CoA epimerase activity Catalysis of the reaction: (R)-methylmalonyl-CoA = (S)-methylmalonyl-CoA. tmpzr1t_l9r_go_relaxed.owl methylmalonyl coenzyme A racemase activity|methylmalonyl-CoA racemase activity|DL-methylmalonyl-CoA racemase activity|methylmalonyl-CoA 2-epimerase activity|2-methyl-3-oxopropanoyl-CoA 2-epimerase activity RHEA:20553|MetaCyc:METHYLMALONYL-COA-EPIM-RXN|EC:5.1.99.1|Reactome:R-HSA-71020|KEGG_REACTION:R02765 molecular_function owl:Class GO:0102328 biolink:NamedThing 3-oxoacid decarboxylase activity Catalysis of the reaction: H+ + a 3-oxoacid = carbon dioxide + a methylketone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13248 molecular_function owl:Class GO:0000832 biolink:NamedThing inositol hexakisphosphate 5-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate = ADP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl ATP:1D-myo-inositol-hexakisphosphate 5-phosphotransferase activity RHEA:12793|EC:2.7.4.21|MetaCyc:2.7.1.152-RXN|KEGG_REACTION:R09087 molecular_function owl:Class GO:0038104 biolink:NamedThing nodal receptor complex A protein complex containing at least a type II activin receptor, a type I activin receptor, and a coreceptor (EGF-CFC protein) such as Cripto or Cryptic. Nodal receptor complexes are capable of binding a nodal protein and transducing the signal into the cell. tmpzr1t_l9r_go_relaxed.owl ActRIIB.ALK4.EGF-CFC complex Nodal signals through activin receptors but (unlike activin) also requires EGF-CFC coreceptors (such as Cripto or Cryptic in mammals) to signal. This term is intended for receptor/co-receptor components and not a nodal-receptor complex. bf 2012-02-17T11:12:21Z cellular_component owl:Class GO:0033270 biolink:NamedThing paranode region of axon An axon part that is located adjacent to the nodes of Ranvier and surrounded by lateral loop portions of myelin sheath. tmpzr1t_l9r_go_relaxed.owl paranode NIF_Subcellular:sao234066064|NIF_Subcellular:sao936144858 cellular_component owl:Class GO:0045135 biolink:NamedThing poly(beta-D-mannuronate) lyase activity Catalysis of the reaction: polysaccharides containing beta-D-mannuronate residues = oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl end. This reaction is the eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. tmpzr1t_l9r_go_relaxed.owl alginate lyase activity|alginase activity|alginase I|poly(beta-D-1,4-mannuronide) lyase activity|alginate lyase I activity|poly(mana) alginate lyase activity MetaCyc:4.2.2.3-RXN|EC:4.2.2.3 molecular_function owl:Class GO:0110130 biolink:NamedThing ribitol-5-phosphatase activity Catalysis of the reaction: ribitol-5-phosphate + H20 = ribitol + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:47648 kmv 2018-10-08T19:47:57Z molecular_function owl:Class GO:0000720 biolink:NamedThing pyrimidine dimer repair by nucleotide-excision repair The repair of UV-induced T-T, C-T, and C-C dimers by the recognition and removal of the damaged DNA strand from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. tmpzr1t_l9r_go_relaxed.owl Note that the repair of pyrimidine dimers by nucleotide excision repair involves the same gene products that are involved in general nucleotide excision repair. Consider also annotating to other children of the biological process term 'nucleotide-excision repair ; GO:0006289'. biological_process owl:Class GO:0006290 biolink:NamedThing pyrimidine dimer repair The repair of UV-induced T-T, C-T and C-C dimers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007211 biolink:NamedThing octopamine or tyramine signaling pathway The series of molecular signals generated as a consequence of octopamine or tyramine binding to a cell surface receptor. Octopamine and tyramine are decarboxylation products of tyrosine, and are the invertebrate counterparts of the vertebrate adrenergic transmitters. tmpzr1t_l9r_go_relaxed.owl octopamine/tyramine signaling pathway|octopamine or tyramine signalling pathway biological_process owl:Class GO:0021878 biolink:NamedThing forebrain astrocyte fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an astrocyte that resides in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060018 biolink:NamedThing astrocyte fate commitment The commitment of a cells to a specific astrocyte fate and its restriction to develop only into an astrocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901118 biolink:NamedThing cephamycin C biosynthetic process The chemical reactions and pathways resulting in the formation of cephamycin C. tmpzr1t_l9r_go_relaxed.owl cephamycin C formation|cephamycin C synthesis|cephamycin C anabolism|cephamycin C biosynthesis yaf 2012-07-11T03:07:21Z biological_process owl:Class GO:1904761 biolink:NamedThing negative regulation of myofibroblast differentiation Any process that stops, prevents or reduces the frequency, rate or extent of myofibroblast differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of myofibroblast cell differentiation|downregulation of myofibroblast cell differentiation|inhibition of myofibroblast differentiation|negative regulation of myofibroblast cell differentiation|inhibition of myofibroblast cell differentiation|down regulation of myofibroblast differentiation|down regulation of myofibroblast cell differentiation|downregulation of myofibroblast differentiation|down-regulation of myofibroblast differentiation rph 2015-10-23T12:15:11Z biological_process owl:Class GO:0034650 biolink:NamedThing cortisol metabolic process The chemical reactions and pathways involving cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties. tmpzr1t_l9r_go_relaxed.owl cortisol metabolism biological_process owl:Class GO:0008211 biolink:NamedThing glucocorticoid metabolic process The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects. tmpzr1t_l9r_go_relaxed.owl glucocorticosteroid metabolic process|glucocorticoid metabolism|glucocorticosteroid metabolism biological_process owl:Class GO:0099184 biolink:NamedThing structural constituent of postsynaptic intermediate filament cytoskeleton The action of a molecule that contributes to the structural integrity of a postsynaptic intermediate filament cytoskeleton. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T13:45:35Z molecular_function owl:Class GO:0071391 biolink:NamedThing cellular response to estrogen stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics. tmpzr1t_l9r_go_relaxed.owl cellular response to oestrogen stimulus mah 2009-12-11T04:09:56Z biological_process owl:Class GO:1904358 biolink:NamedThing positive regulation of telomere maintenance via telomere lengthening Any process that activates or increases the frequency, rate or extent of telomere maintenance via telomere lengthening. tmpzr1t_l9r_go_relaxed.owl up-regulation of telomere maintenance via telomere lengthening|upregulation of telomere maintenance via telomere lengthening|activation of telomere maintenance via telomere lengthening|up regulation of telomere maintenance via telomere lengthening nc 2015-06-12T16:53:28Z biological_process owl:Class GO:0050855 biolink:NamedThing regulation of B cell receptor signaling pathway Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell. tmpzr1t_l9r_go_relaxed.owl regulation of B-lymphocyte receptor signaling pathway|regulation of B-cell receptor signaling pathway|regulation of B cell receptor signalling pathway|regulation of B-cell receptor signalling pathway|regulation of B lymphocyte receptor signaling pathway|regulation of B lymphocyte receptor signalling pathway|regulation of B-lymphocyte receptor signalling pathway biological_process owl:Class GO:0048876 biolink:NamedThing chemical homeostasis within retina Any process involved in the maintenance of the internal steady state of the amount of a chemical at the level of the retina. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097712 biolink:NamedThing vesicle targeting, trans-Golgi to periciliary membrane compartment The process in which vesicles formed at the trans-Golgi network are directed to the plasma membrane surrounding the base of the cilium, including the ciliary pocket, mediated by molecules at the vesicle membrane and target membrane surfaces. tmpzr1t_l9r_go_relaxed.owl pr 2016-08-05T16:16:28Z biological_process owl:Class GO:1905058 biolink:NamedThing calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration Any calcium-induced calcium release activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium levels dos 2016-03-18T12:31:59Z molecular_function owl:Class GO:0008531 biolink:NamedThing riboflavin kinase activity Catalysis of the reaction: ATP + riboflavin = ADP + FMN + 2 H(+). tmpzr1t_l9r_go_relaxed.owl flavokinase activity|riboflavine kinase activity|riboflavin kinase (phosphorylating)|FK|ATP:riboflavin 5'-phosphotransferase activity Reactome:R-HSA-196964|MetaCyc:RIBOFLAVINKIN-RXN|RHEA:14357|KEGG_REACTION:R00549|EC:2.7.1.26 molecular_function owl:Class GO:0018736 biolink:NamedThing 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA hydrolase activity Catalysis of the reaction: 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA + H2O = 3-hydroxypimeloyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0206 molecular_function owl:Class GO:0004706 biolink:NamedThing JUN kinase kinase kinase activity Catalysis of the reaction: JNKK + ATP = JNKK phosphate + ADP. This reaction is the phosphorylation and activation of JUN kinase kinases (JNKKs). tmpzr1t_l9r_go_relaxed.owl JNKKK|JNK kinase kinase activity molecular_function owl:Class GO:0047754 biolink:NamedThing choline sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + choline = adenosine 3',5'-diphosphate + choline sulfate + H(+). tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:choline sulfotransferase activity|choline sulphotransferase activity|choline sulphokinase activity EC:2.8.2.6|RHEA:21984|KEGG_REACTION:R01027|MetaCyc:CHOLINE-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:1903981 biolink:NamedThing enterobactin binding Binding to enterobactin. tmpzr1t_l9r_go_relaxed.owl enterochelin binding|siderophore binding mr 2015-03-02T17:21:54Z molecular_function owl:Class GO:0032979 biolink:NamedThing protein insertion into mitochondrial inner membrane from matrix The process in which a protein is incorporated into the mitochondrial inner membrane from the matrix side. This includes membrane insertion of newly synthesized mitochondrially-encoded proteins, and insertion of nuclear-encoded proteins after their import into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl protein insertion into mitochondrial inner membrane from matrix side|insertion of proteins into the mitochondrial membrane from the inner side|protein insertion into mitochondrial membrane from inner side biological_process owl:Class GO:0047177 biolink:NamedThing glycerophospholipid arachidonoyl-transferase (CoA-independent) activity Catalysis of the reaction: 1-alkyl-2-lyso-sn-glycero-3-phosphoethanolamine + 1-alkyl-2-arachidonyl-sn-glycero-3-phosphocholine = 1-alkyl-2-lyso-sn-glycero-3-phosphocholine + 1-alkyl-2-arachidonyl-sn-glycero-3-phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl 1-organyl-2-arachidonoyl-sn-glycero-3-phosphocholine:1-organyl-2-lyso-sn-glycero-3-phosphoethanolamine arachidonoyltransferase (CoA-independent)|1-organyl-2-arachidonyl-sn-glycero-3-phosphocholine:1-organyl-2-lyso-sn-glycero-3-phosphoethanolamine arachidonoyltransferase (CoA-independent) MetaCyc:2.3.1.147-RXN|EC:2.3.1.147|RHEA:15409 molecular_function owl:Class GO:0048322 biolink:NamedThing axial mesodermal cell fate commitment The process in which a cell becomes committed to become an axial mesoderm cell. tmpzr1t_l9r_go_relaxed.owl axial mesoderm cell fate commitment biological_process owl:Class GO:0018591 biolink:NamedThing methyl tertiary butyl ether 3-monooxygenase activity Catalysis of the reaction: methyl tert-butyl ether + 1/2 O2 = tert-butyl alcohol + formaldehyde. tmpzr1t_l9r_go_relaxed.owl MTBE 3-monooxygenase activity molecular_function owl:Class GO:1902799 biolink:NamedThing regulation of phosphodiesterase I activity Any process that modulates the frequency, rate or extent of phosphodiesterase I activity. tmpzr1t_l9r_go_relaxed.owl regulation of nucleotide pyrophosphatase/phosphodiesterase I activity|regulation of exonuclease I activity|regulation of 5'-nucleotide phosphodiesterase activity|regulation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|regulation of 5'NPDE activity|regulation of 5'-NPDase activity|regulation of oligonucleate 5'-nucleotidohydrolase activity|regulation of 5'-PDase activity|regulation of PDE I activity|regulation of 5'-PDE activity|regulation of alkaline phosphodiesterase activity|regulation of phosphodiesterase activity|regulation of 5'-phosphodiesterase activity|regulation of orthophosphoric diester phosphohydrolase activity|regulation of 5'-exonuclease activity al 2014-03-25T08:55:48Z biological_process owl:Class GO:0008518 biolink:NamedThing folate:anion antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Folate derivative (out) + anion (in) = folate derivative (in) + anion (out). The Reduced Folate Carrier (RCF(SLC19A1) acts by an antiport mechanism. RCF carries several folate derivatives: MTX, PMX, ratitrexed, pralatrexate, 5-methyl THF, and 5-formyl THF. tmpzr1t_l9r_go_relaxed.owl reduced folate carrier activity|reduced folate transporter|reduced folate transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/15461 TC:2.A.48 molecular_function owl:Class GO:1900272 biolink:NamedThing negative regulation of long-term synaptic potentiation Any process that stops, prevents or reduces the frequency, rate or extent of long-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of LTP|down-regulation of long-term synaptic potentiation|negative regulation of long-term potentiation|downregulation of LTP|downregulation of long-term synaptic potentiation|inhibition of long-term synaptic potentiation|down regulation of long-term potentiation|inhibition of long-term potentiation|down regulation of long-term synaptic potentiation|inhibition of LTP|down-regulation of LTP|negative regulation of LTP|down-regulation of long-term potentiation|downregulation of long-term potentiation rl 2012-04-04T07:17:21Z biological_process owl:Class GO:1900271 biolink:NamedThing regulation of long-term synaptic potentiation Any process that modulates the frequency, rate or extent of long-term synaptic potentiation. tmpzr1t_l9r_go_relaxed.owl regulation of LTP|regulation of long-term potentiation rl 2012-04-04T07:17:13Z biological_process owl:Class GO:0102194 biolink:NamedThing protein-fructosamine 3-kinase activity Catalysis of the reaction: ATP + a [protein]-N6-D-fructosyl-L-lysine <=> ADP + H+ + a [protein]-N6-(3-O-phospho-D-fructosyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl fructosamine-3-kinase activity EC:2.7.1.171|RHEA:59832|MetaCyc:RXN-12005 GO:0030387 molecular_function owl:Class GO:0018619 biolink:NamedThing benzene 1,2-dioxygenase activity Catalysis of the reaction: benzene + H(+) + NADH + O(2) = cis-cyclohexa-3,5-diene-1,2-diol + NAD(+). tmpzr1t_l9r_go_relaxed.owl benzene dioxygenase activity|benzene hydroxylase activity|benzene,NADH:oxygen oxidoreductase (1,2-hydroxylating) UM-BBD_reactionID:r0079|EC:1.14.12.3|KEGG_REACTION:R03543|MetaCyc:BENZENE-12-DIOXYGENASE-RXN|RHEA:13813 molecular_function owl:Class GO:0021946 biolink:NamedThing deep nuclear neuron cell migration The directed movement of a deep nuclear neuron from the ventricular zone to the deep hindbrain nuclei. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904133 biolink:NamedThing regulation of convergent extension involved in rhombomere morphogenesis Any process that modulates the frequency, rate or extent of convergent extension involved in rhombomere morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-10T21:21:12Z biological_process owl:Class GO:0008662 biolink:NamedThing 1-phosphofructokinase activity Catalysis of the reaction: ATP + D-fructose 1-phosphate = ADP + D-fructose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphofructokinase (phosphorylating)|ATP:D-fructose-phosphate 6-phosphotransferase activity|fructose-1-phosphate kinase activity|phosphofructokinase 1|D-fructose-1-phosphate kinase activity|fructose 1-phosphate kinase activity RHEA:14213|EC:2.7.1.56|MetaCyc:1PFRUCTPHOSN-RXN molecular_function owl:Class GO:0010083 biolink:NamedThing regulation of vegetative meristem growth Any process involved in maintaining the size and shape of a vegetative meristem. tmpzr1t_l9r_go_relaxed.owl regulation of vegetative meristem size biological_process owl:Class GO:2000440 biolink:NamedThing regulation of toll-like receptor 15 signaling pathway Any process that modulates the frequency, rate or extent of toll-like receptor 15 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR15 signaling pathway|regulation of toll-like receptor 15 signalling pathway bf 2011-03-04T10:28:24Z biological_process owl:Class GO:0008365 biolink:NamedThing adult chitin-based cuticle development Synthesis and deposition of the chitin-based cuticle of adults following the apolysis of the pupal cuticle. The adult insect cuticle contains cuticullin, a protein epicuticle and a lamellate procuticle. An example of this process is adult chitin-based cuticle development in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl adult chitin-based cuticle anabolism|adult cuticle synthesis|adult chitin-based cuticle synthesis|adult chitin-based cuticle biosynthetic process|adult cuticle anabolism|adult chitin-based cuticle formation|adult cuticle biosynthetic process|adult cuticle formation biological_process owl:Class GO:0106227 biolink:NamedThing peptidyl-lysine glutarylation The glutarylation of a lysine residue in a protein. tmpzr1t_l9r_go_relaxed.owl hjd 2019-10-17T18:57:19Z biological_process owl:Class GO:0120323 biolink:NamedThing lipid ubiquitination The process in which one or more ubiquitin groups are added to a lipid. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21857 krc 2021-07-20T18:58:34Z biological_process owl:Class GO:0120322 biolink:NamedThing lipid modification by small protein conjugation A lipid modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target lipid. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21857 krc 2021-07-20T18:53:03Z biological_process owl:Class GO:2000100 biolink:NamedThing regulation of establishment or maintenance of bipolar cell polarity regulating cell shape Any process that modulates the frequency, rate or extent of establishment or maintenance of bipolar cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T04:44:57Z biological_process owl:Class GO:0051797 biolink:NamedThing regulation of hair follicle development Any process that modulates the frequency, rate or extent of hair follicle development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032428 biolink:NamedThing beta-N-acetylgalactosaminidase activity Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-beta-D-galactosaminides. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.2.1.53-RXN|EC:3.2.1.53 molecular_function owl:Class GO:0004563 biolink:NamedThing beta-N-acetylhexosaminidase activity Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. tmpzr1t_l9r_go_relaxed.owl N-acetyl-beta-glucosaminidase activity|beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase activity|beta-D-hexosaminidase activity|hexosaminidase A|beta-acetylaminodeoxyhexosidase activity|N-acetyl-beta-D-hexosaminidase activity|beta-acetylhexosaminidinase activity|beta-N-acetyl-D-hexosaminidase activity|beta-D-N-acetylhexosaminidase activity|beta-hexosaminidase activity|N-acetyl-beta-hexosaminidase activity|N-acetylhexosaminidase activity Reactome:R-HSA-3656259|Reactome:R-HSA-9638075|EC:3.2.1.52|Reactome:R-HSA-3662344|Reactome:R-HSA-9035978|Reactome:R-HSA-9035982|Reactome:R-HSA-2162225|Reactome:R-HSA-9035983|Reactome:R-HSA-1605632|MetaCyc:3.2.1.52-RXN|Reactome:R-HSA-1605595|Reactome:R-HSA-9638078|Reactome:R-HSA-9035976|Reactome:R-HSA-2105001|Reactome:R-HSA-1638053|Reactome:R-HSA-9638076 molecular_function owl:Class GO:0120055 biolink:NamedThing small intestinal transit Migration of ingested material along the length of the small intestine. tmpzr1t_l9r_go_relaxed.owl small intestine transit|small bowel transit krc 2017-06-13T20:46:41Z biological_process owl:Class GO:0031159 biolink:NamedThing positive regulation of aggregate size involved in sorocarp development Any process that increases the size of the aggregate formed during sorocarp formation. tmpzr1t_l9r_go_relaxed.owl upregulation of aggregate size|up regulation of aggregate size|activation of aggregate size|up-regulation of aggregate size|stimulation of aggregate size biological_process owl:Class GO:0036311 biolink:NamedThing chitin disaccharide deacetylase activity Catalysis of the reaction: 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-2-deoxy-beta-D-glucopyranose + H2O = 2-(acetylamino)-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-beta-D-glucopyranose + acetate. tmpzr1t_l9r_go_relaxed.owl chitin oligosaccharide amidohydrolase activity|chitobiose amidohydrolase activity|chitin oligosaccharide deacetylase activity In contrast to EC:3.5.1.41 (chitin deacetylase) this enzyme is specific for the chitin disaccharide. bf 2012-08-15T15:18:09Z molecular_function owl:Class GO:0030878 biolink:NamedThing thyroid gland development The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000939 biolink:NamedThing regulation of plant-type cell wall cellulose catabolic process Any process that modulates the frequency, rate or extent of plant-type cell wall cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of plant-type cell wall polysaccharide breakdown tt 2011-08-01T02:07:11Z biological_process owl:Class GO:1990346 biolink:NamedThing BID-BCL-xl complex A heterodimeric protein complex consisting of BID and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-25T00:18:41Z cellular_component owl:Class GO:0102262 biolink:NamedThing tRNA-dihydrouridine16 synthase activity Catalysis of the reaction: a 5,6-dihydrouracil16 in tRNA + NAD(P) <=> H+ + a uracil16 in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12454 molecular_function owl:Class GO:0030597 biolink:NamedThing RNA glycosylase activity Catalysis of the hydrolysis of N-glycosidic bonds in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051538 biolink:NamedThing 3 iron, 4 sulfur cluster binding Binding to a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. tmpzr1t_l9r_go_relaxed.owl 3Fe-4S cluster binding|iron-sulphur cluster 3Fe-4S binding|triiron tetrasulphide cluster binding|3 Fe 4 S cluster binding|3 iron, 4 sulphur cluster binding|iron-sulfur cluster 3Fe-4S binding|triiron tetrasulfide cluster binding molecular_function owl:Class GO:0009670 biolink:NamedThing triose-phosphate:phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: triose-phosphate(out) + phosphate(in) = triose-phosphate(in) + phosphate(out). tmpzr1t_l9r_go_relaxed.owl triose phosphate translocator|triose phosphate antiporter|dihydroxyacetone phosphate:phosphate antiporter activity|TPT GO:0015122 molecular_function owl:Class GO:0015693 biolink:NamedThing magnesium ion transport The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl magnesium transport biological_process owl:Class GO:0034315 biolink:NamedThing regulation of Arp2/3 complex-mediated actin nucleation Any process that modulates the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043073 biolink:NamedThing germ cell nucleus The nucleus of a germ cell, a reproductive cell in multicellular organisms. tmpzr1t_l9r_go_relaxed.owl germ-cell nucleus cellular_component owl:Class GO:0140471 biolink:NamedThing positive regulation of transepithelial migration of symbiont in host Any process that activates or increases the frequency, rate or extent of transepithelial migration of symbiont in host. tmpzr1t_l9r_go_relaxed.owl positive regulation of transmigration of symbiont in host https://github.com/geneontology/go-ontology/issues/19601 pg 2020-06-11T15:32:38Z biological_process owl:Class GO:0061576 biolink:NamedThing acyl-CoA ceramide synthase complex A protein complex that catalyzes the reaction acyl-CoA + sphingosine = CoA + N-acylsphingosine. In S. cerevisiae it contains three subunits: lag1, lac1 and lip1. tmpzr1t_l9r_go_relaxed.owl dph 2013-10-24T14:42:06Z cellular_component owl:Class GO:0006157 biolink:NamedThing deoxyadenosine catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyadenosine phosphorolysis|deoxyadenosine catabolism|deoxyadenosine degradation|deoxyadenosine breakdown GO:0006159 biological_process owl:Class GO:0048824 biolink:NamedThing pigment cell precursor differentiation The process in which a relatively unspecialized cell acquires specialized features of a pigment cell precursor. tmpzr1t_l9r_go_relaxed.owl chromatophore precursor differentiation biological_process owl:Class GO:0030135 biolink:NamedThing coated vesicle Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1985096626 GO:0005909 cellular_component owl:Class GO:0039701 biolink:NamedThing microtubule-dependent intracellular transport of viral material towards cell periphery The directed movement of the viral genome or a viral particle towards the cell periphery using host microtubules. Mostly used by viruses that replicate their genome near or in the nucleus to allows newly assembled viral progeny to reach the plasma membrane. tmpzr1t_l9r_go_relaxed.owl VZ:1816 bf 2013-11-06T16:09:57Z biological_process owl:Class GO:0075519 biolink:NamedThing microtubule-dependent intracellular transport of viral material The directed movement of the viral genome or viral particle within the host cell cytoplasm along host microtubules. Microtubule-dependent transport involves motor proteins like dynein and kinesin and is mostly used by viruses that target their genomes to the nucleus. tmpzr1t_l9r_go_relaxed.owl jl 2011-08-03T01:45:25Z biological_process owl:Class GO:0047044 biolink:NamedThing androstan-3-alpha,17-beta-diol dehydrogenase activity Catalysis of the reaction: NAD+ + androstan-3-alpha,17-beta-diol = 17-beta-hydroxyandrostan-3-one + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 20beta-hydroxysteroid dehydrogenase activity|20beta-HSD|(R)-20-hydroxysteroid dehydrogenase activity|dehydrogenase, 20beta-hydroxy steroid|3alpha,20beta-hydroxysteroid:NAD+-oxidoreductase activity|NADH-20beta-hydroxysteroid dehydrogenase activity|delta4-3-ketosteroid hydrogenase activity|3alpha(or 20beta)-hydroxysteroid dehydrogenase activity|3-alpha(or 20-beta)-hydroxysteroid dehydrogenase activity|cortisone reductase activity|3alpha(or 20beta)-hydroxysteroid:NAD+ oxidoreductase activity EC:1.1.1.53|RHEA:22400|MetaCyc:1.1.1.53-RXN molecular_function owl:Class GO:0110061 biolink:NamedThing regulation of angiotensin-activated signaling pathway Any process that modulates the frequency, rate or extent of the angiotensin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-26T17:37:37Z biological_process owl:Class GO:1904310 biolink:NamedThing cellular response to cordycepin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cordycepin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 3'-deoxyadenosine sl 2015-06-10T17:10:35Z biological_process owl:Class GO:0015854 biolink:NamedThing guanine transport The directed movement of guanine, 2-amino-6-hydroxypurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032031 biolink:NamedThing myosin I head/neck binding Binding to the head/neck region of a myosin I heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106407 biolink:NamedThing Glc2Man9GlcNAc2 oligosaccharide glucosidase activity Catalysis of the reaction: Glc(2)Man(9)GlcNAc(2)-[protein] + H(2)O = GlcMan(9)GlcNAc(2)-[protein] + beta-D-glucopyranose. tmpzr1t_l9r_go_relaxed.owl Glucosidase II Trims Glc alpha 1,3 Glc bond in Glc2Man9GlcNAc2 oligosaccharide in inmature glycoproteins. hjd 2021-10-28 00:35:46+00:00 molecular_function owl:Class GO:0004573 biolink:NamedThing Glc3Man9GlcNAc2 oligosaccharide glucosidase activity Catalysis of the exohydrolysis of the non-reducing terminal glucose residue in the mannosyl-oligosaccharide Glc(3)Man(9)GlcNAc(2). tmpzr1t_l9r_go_relaxed.owl trimming glucosidase I|mannosyl-oligosaccharide glucosidase (processing A-glucosidase I) activity|mannosyl-oligosaccharide glucosidase activity|mannosyl-oligosaccharide glucohydrolase activity|processing A-glucosidase I activity RHEA:55988|MetaCyc:3.2.1.106-RXN|Reactome:R-HSA-4793947|Reactome:R-HSA-532678|EC:3.2.1.106|Reactome:R-HSA-9694364 molecular_function owl:Class GO:0050046 biolink:NamedThing delta7-sterol 5(6)-desaturase activity Catalysis of the reaction: a delta(7)-sterol + 2 ferrocytochrome b5 + O2 + 2 H+ -> a delta(5,7)-sterol + 2 ferricytochrome b5 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl lathosterol oxidase activity|delta7-sterol 5-desaturase activity|delta7-sterol-C5(6)-desaturase activity|lathosterol 5-desaturase activity|5-DES|delta7-sterol delta5-dehydrogenase activity https://github.com/geneontology/go-ontology/issues/21133 EC:1.14.19.20|MetaCyc:1.14.21.6-RXN|RHEA:46556 molecular_function owl:Class GO:0070704 biolink:NamedThing sterol desaturase activity Catalysis of the introduction of a double bond into a sterol molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-08T03:53:44Z molecular_function owl:Class GO:0102610 biolink:NamedThing (+)-secoisolariciresinol glucosyltransferase activity Catalysis of the reaction: (+)-secoisolariciresinol + UDP-alpha-D-glucose <=> (+)-secoisolariciresinol monoglucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15442 molecular_function owl:Class GO:0002856 biolink:NamedThing negative regulation of natural killer cell mediated immune response to tumor cell Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell. tmpzr1t_l9r_go_relaxed.owl inhibition of natural killer cell mediated immune response to tumor cell|down-regulation of natural killer cell mediated immune response to tumor cell|downregulation of natural killer cell mediated immune response to tumor cell|down regulation of natural killer cell mediated immune response to tumor cell biological_process owl:Class GO:0018045 biolink:NamedThing C-terminal peptidyl-lysine amidation The formation of a C-terminal peptidyl-lysine amide by hydrolysis and oxidation of an interior Lys-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0092 biological_process owl:Class GO:2000561 biolink:NamedThing regulation of CD4-positive, alpha-beta T cell proliferation Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:01:04Z biological_process owl:Class GO:1903418 biolink:NamedThing protein localization to plasma membrane of cell tip A process in which a protein is transported to, or maintained in, a location within a plasma membrane of cell tip. tmpzr1t_l9r_go_relaxed.owl protein localisation to plasma membrane of cell tip|protein localisation in plasma membrane of cell tip|protein localization in plasma membrane of cell tip mah 2014-09-08T15:08:51Z biological_process owl:Class GO:0000034 biolink:NamedThing adenine deaminase activity Catalysis of the reaction: adenine + H2O = hypoxanthine + NH3. tmpzr1t_l9r_go_relaxed.owl adenase activity|adenine aminase activity|adenine aminohydrolase activity|ADase activity MetaCyc:ADENINE-DEAMINASE-RXN|EC:3.5.4.2|RHEA:23688 molecular_function owl:Class GO:0004152 biolink:NamedThing dihydroorotate dehydrogenase activity Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate. tmpzr1t_l9r_go_relaxed.owl dihydoorotic acid dehydrogenase activity|(S)-dihydroorotate:quinone oxidoreductase activity|(DHO) dehydrogenase activity|dihydroorotate:ubiquinone oxidoreductase activity|DHOdehase activity EC:1.3.5.2|RHEA:18073|Reactome:R-HSA-73569|MetaCyc:DIHYDROOROTATE-DEHYDROGENASE-RXN|KEGG_REACTION:R01868 molecular_function owl:Class GO:0010364 biolink:NamedThing regulation of ethylene biosynthetic process Any process that modulates the frequency, rate, or extent of an ethylene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035238 biolink:NamedThing vitamin A biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin A compounds, retinol, retinal (retinaldehyde) and retinoic acid. Animals cannot synthesize vitamin A de novo, but form it through oxidative cleavage of carotenoids. tmpzr1t_l9r_go_relaxed.owl vitamin A biosynthesis|vitamin A synthesis|vitamin A formation|vitamin A anabolism biological_process owl:Class GO:0140330 biolink:NamedThing xenobiotic detoxification by transmembrane export across the cell outer membrane A process that reduces or removes the toxicity of a xenobiotic by exporting it outside the cell through the outer membrane. tmpzr1t_l9r_go_relaxed.owl pg 2019-05-03T10:35:57Z biological_process owl:Class GO:0120319 biolink:NamedThing long-chain fatty acid omega-1 hydroxylase activity Catalysis of the reaction: an (omega-1)-ethyl long-chain fatty acid + O2 + reduced [NADPH-hemoprotein reductase] = an (omega-1)-hydroxy-long-chain fatty acid + H+ + H2O + oxidized [NADPH-hemoprotein reductase. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 fatty acid omega-1 hydroxylase activity https://github.com/geneontology/go-ontology/issues/21648 RHEA:60936 krc 2021-06-21T18:31:38Z molecular_function owl:Class GO:0102097 biolink:NamedThing (22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity Catalysis of the reaction: (5alpha,22S,24R)-22-hydroxyergostan-3-one + O2 + NADPH + H+ <=> 3-dehydro-6-deoxoteasterone + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:27325|MetaCyc:RXN-11101|EC:1.14.14.147 molecular_function owl:Class GO:1904793 biolink:NamedThing regulation of euchromatin binding Any process that modulates the frequency, rate or extent of euchromatin binding. tmpzr1t_l9r_go_relaxed.owl nc 2015-11-09T11:43:04Z biological_process owl:Class GO:0070206 biolink:NamedThing protein trimerization The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits. tmpzr1t_l9r_go_relaxed.owl protein trimer assembly|protein trimer biosynthesis|protein trimer formation|protein trimer biosynthetic process biological_process owl:Class GO:1990859 biolink:NamedThing cellular response to endothelin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an endothelin stimulus. Endothelin is any of three secretory vasoconstrictive peptides (endothelin-1, -2, -3). tmpzr1t_l9r_go_relaxed.owl sl 2015-09-24T15:39:48Z biological_process owl:Class GO:1902156 biolink:NamedThing positive regulation of response to G1 DNA damage checkpoint signaling Any process that activates or increases the frequency, rate or extent of response to G1 DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|upregulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|up regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|positive regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|up regulation of response to G1 DNA damage checkpoint signaling|up-regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|up-regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|upregulation of response to G1 DNA damage checkpoint signaling|activation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|up-regulation of response to G1 DNA damage checkpoint signaling|activation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process|up regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|activation of response to G1 DNA damage checkpoint signaling|upregulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling|positive regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process|upregulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process|up-regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process|activation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint|up regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process jl 2013-05-21T15:44:58Z biological_process owl:Class GO:0031485 biolink:NamedThing myosin XV complex A myosin complex containing a class XV myosin heavy chain and associated light chains. Myosin XV is single headed, and has a large extension (1200aa) at the N-terminus of the motor domain, two IQ motifs and a tail with a similar domain structure to that of the tail of myosin VII. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035455 biolink:NamedThing response to interferon-alpha Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-alpha stimulus. Interferon-alpha is a type I interferon. tmpzr1t_l9r_go_relaxed.owl response to lymphoblastoid interferon|response to leukocyte interferon|response to lymphoblast interferon|response to interferon alfa-n1|response to interferon alfa-n3 bf 2010-04-16T10:57:16Z biological_process owl:Class GO:0034306 biolink:NamedThing regulation of sexual sporulation Any process that modulates the frequency, rate or extent of spore formation from the products of meiosis. An example of this is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl regulation of sexual spore formation|MAPKKK cascade during sporulation|regulation of meiotic sporulation|regulation of meiotic spore formation biological_process owl:Class GO:0006932 biolink:NamedThing substrate-dependent cell migration, cell contraction The translocation of the cell body forward during cell migration, mediated by tractional force on its substrate and tension in the cortical cytoskeleton. Adhesions transmit propulsive forces and serve as traction points over which the cell moves. tmpzr1t_l9r_go_relaxed.owl substrate-bound cell migration, cell contraction biological_process owl:Class GO:0120098 biolink:NamedThing procentriole A cellular structure that is the site of a developing centriole, which will become a microtubule organizing center. During the canonical pathway of centriole duplication that occurs during the cell division cycle, procentrioles grow at the proximal ends of both mother and daughter centrioles. In the newly divided cells, the original mother and daughter centrioles become mother centrioles while the procentrioles become the new daughter centrioles. Procentrioles can also arise from de novo pathways that occur in multiciliated cells. In ciliated epithelial cells, numerous procentrioles arise form electron dense material referred to as fibrous granules and deuterosomes. The pathway of procentriole formation in multiciliated protists appears to be similar to that in mammalian multiciliated epithelium. In sperm of primative land plants, multiple procentrioles are formed from a blepharoplast giving rise to multicilated sperm cells. tmpzr1t_l9r_go_relaxed.owl krc 2017-09-28T21:22:56Z cellular_component owl:Class GO:1900033 biolink:NamedThing negative regulation of trichome patterning Any process that stops, prevents or reduces the frequency, rate or extent of trichome patterning. tmpzr1t_l9r_go_relaxed.owl inhibition of trichome pattern formation|negative regulation of trichome spacing|down regulation of trichome pattern biosynthesis|downregulation of trichome patterning|downregulation of trichome pattern formation|down-regulation of trichome pattern specification|negative regulation of trichome pattern formation|down-regulation of trichome pattern formation|inhibition of trichome distribution|down regulation of trichome patterning|down-regulation of trichome spacing|down regulation of trichome distribution|downregulation of trichome pattern biosynthesis|down-regulation of trichome patterning|inhibition of trichome pattern specification|down-regulation of trichome pattern biosynthesis|downregulation of trichome distribution|negative regulation of trichome pattern biosynthesis|down regulation of trichome pattern specification|down-regulation of trichome distribution|negative regulation of trichome pattern specification|down regulation of trichome spacing|negative regulation of trichome distribution|inhibition of trichome patterning|downregulation of trichome spacing|inhibition of trichome pattern biosynthesis|inhibition of trichome spacing|downregulation of trichome pattern specification|down regulation of trichome pattern formation tb 2012-01-13T11:10:50Z biological_process owl:Class GO:0047907 biolink:NamedThing furylfuramide isomerase activity Catalysis of the reaction: (E)-2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide = (Z)-2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide. tmpzr1t_l9r_go_relaxed.owl 2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide cis-trans-isomerase activity RHEA:21848|MetaCyc:FURYLFURAMIDE-ISOMERASE-RXN|KEGG_REACTION:R04538|EC:5.2.1.6 molecular_function owl:Class GO:0047819 biolink:NamedThing D-glutamate(D-aspartate) oxidase activity Catalysis of the reaction: D-glutamate + H2O + O2 = 2-oxoglutarate + NH3 + H2O2, and D-aspartate + H2O + O2 = oxaloacetate + NH3 + H2O2. tmpzr1t_l9r_go_relaxed.owl D-glutamic-aspartic oxidase activity|D-monoaminodicarboxylic acid oxidase activity|D-glutamate(D-aspartate):oxygen oxidoreductase (deaminating) MetaCyc:D-GLUTAMATED-ASPARTATE-OXIDASE-RXN|EC:1.4.3.15 For the individual reactions, see instead 'D-glutamate oxidase activity ;GO:0047821' and 'D-aspartate oxidase activity ; GO:0008445'. molecular_function owl:Class GO:0035631 biolink:NamedThing CD40 receptor complex A protein complex that contains at least CD40 (a cell surface receptor of the tumour necrosis factor receptor (TNFR) superfamily), and other signaling molecules. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-21T10:35:05Z cellular_component owl:Class GO:1903331 biolink:NamedThing positive regulation of iron-sulfur cluster assembly Any process that activates or increases the frequency, rate or extent of iron-sulfur cluster assembly. tmpzr1t_l9r_go_relaxed.owl activation of iron-sulfur cluster biosynthesis|up regulation of iron-sulfur cluster assembly|upregulation of iron-sulphur cluster assembly|activation of iron-sulfur cluster assembly|up-regulation of iron-sulfur cluster biosynthesis|upregulation of iron-sulfur cluster biosynthesis|positive regulation of iron-sulphur cluster assembly|positive regulation of iron-sulfur cluster biosynthesis|activation of iron-sulphur cluster assembly|up-regulation of iron-sulfur cluster assembly|up-regulation of iron-sulphur cluster assembly|up regulation of iron-sulfur cluster biosynthesis|up regulation of iron-sulphur cluster assembly|upregulation of iron-sulfur cluster assembly vw 2014-08-18T13:12:57Z biological_process owl:Class GO:0070781 biolink:NamedThing response to biotin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotin stimulus. tmpzr1t_l9r_go_relaxed.owl response to coenzyme R|response to vitamin B7|response to Bios IIB|response to vitamin H mah 2009-07-02T02:34:43Z biological_process owl:Class GO:0043938 biolink:NamedThing positive regulation of sporulation Any process that activates, maintains or increases the frequency, rate or extent of sporulation, the process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003684 biolink:NamedThing damaged DNA binding Binding to damaged DNA. tmpzr1t_l9r_go_relaxed.owl DNA repair enzyme|DNA repair protein molecular_function owl:Class GO:0045514 biolink:NamedThing interleukin-16 receptor binding Binding to an interleukin-16 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-16 receptor ligand|IL-16 molecular_function owl:Class GO:1901849 biolink:NamedThing nicotinate biosynthetic process The chemical reactions and pathways resulting in the formation of nicotinate. tmpzr1t_l9r_go_relaxed.owl nicotinate formation|nicotinate anabolism|nicotinate biosynthesis|nicotinate synthesis yaf 2013-01-28T11:23:57Z biological_process owl:Class GO:0061107 biolink:NamedThing seminal vesicle development The progression of the seminal vesicle over time, from its formation to the mature structure. The seminal vesicle is a gland that contributes to the production of semen. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-30T10:17:30Z biological_process owl:Class GO:0098547 biolink:NamedThing lumenal side of Golgi membrane The side of the Golgi membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T10:44:23Z cellular_component owl:Class GO:0006542 biolink:NamedThing glutamine biosynthetic process The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl glutamine anabolism|glutamine synthesis|glutamine biosynthesis|glutamine formation MetaCyc:GLNSYN-PWY biological_process owl:Class GO:0016075 biolink:NamedThing rRNA catabolic process The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes. tmpzr1t_l9r_go_relaxed.owl rRNA catabolism|rRNA degradation|rRNA breakdown biological_process owl:Class GO:0061627 biolink:NamedThing S-methylmethionine-homocysteine S-methyltransferase activity Catalysis of the reaction: S-methyl-L-methionine + L-homocysteine = 2 L-methionine + H+. tmpzr1t_l9r_go_relaxed.owl S-methylmethionine homocysteine transmethylase activity|homocysteine methyltransferase activity|methylmethionine:homocysteine methyltransferase activity|homocysteine transmethylase activity RHEA:26337|Reactome:R-HSA-5696838 dph 2014-05-14T14:32:02Z molecular_function owl:Class GO:0042299 biolink:NamedThing lupeol synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = lupeol. This reaction is the cyclization of (S)-2,3-epoxysqualene (2,3-oxidosqualene) to lupeol. tmpzr1t_l9r_go_relaxed.owl oxidosqualene:lupeol cyclase activity MetaCyc:RXN-111|EC:5.4.99.41|RHEA:31383 molecular_function owl:Class GO:0070798 biolink:NamedThing positive regulation of cleistothecium development Any process that activates or increases the frequency, rate or extent of cleistothecium development, a process that leads to the formation of a cleistothecium. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:36:43Z biological_process owl:Class GO:2000975 biolink:NamedThing positive regulation of pro-B cell differentiation Any process that activates or increases the frequency, rate or extent of pro-B cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of pro-B lymphocyte differentiation|positive regulation of pro-B cell development yaf 2011-08-02T03:05:53Z biological_process owl:Class GO:1905801 biolink:NamedThing positive regulation of intraciliary retrograde transport Any process that activates or increases the frequency, rate or extent of intraciliary retrograde transport. tmpzr1t_l9r_go_relaxed.owl activation of intraflagellar retrograde transport|positive regulation of intraflagellar retrograde transport|up-regulation of intraflagellar retrograde transport|up-regulation of intraciliary retrograde transport|upregulation of intraflagellar retrograde transport|activation of intraciliary retrograde transport|up regulation of intraciliary retrograde transport|upregulation of intraciliary retrograde transport|up regulation of intraflagellar retrograde transport hbye 2017-01-11T12:58:35Z biological_process owl:Class GO:0047382 biolink:NamedThing methylphosphothioglycerate phosphatase activity Catalysis of the reaction: S-methyl-3-phospho-1-thio-D-glycerate + H(2)O = S-methyl-1-thio-D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl S-methyl-3-phospho-1-thio-D-glycerate phosphohydrolase activity|methylthiophosphoglycerate phosphatase activity RHEA:16081|EC:3.1.3.14|MetaCyc:3.1.3.14-RXN|KEGG_REACTION:R04317 molecular_function owl:Class GO:0048108 biolink:NamedThing peptide cross-linking via 4-amino-3-isothiazolidinone The formation of 4-amino-3-isothiazolinone cross-links by the formation of a sulfenylamide bond between cysteine or cysteine sulfenic acid, and the alpha-amido of the following residue. tmpzr1t_l9r_go_relaxed.owl Note that this is a generic parent because the identity of the second amino acid is not critical for formation of the cross-link. biological_process owl:Class GO:0071665 biolink:NamedThing gamma-catenin-TCF7L2 complex A protein complex that contains gamma-catenin and TCF7L2 (TCF4), binds to the TCF DNA motif within a promoter element, and is involved in the regulation of WNT target gene transcription. tmpzr1t_l9r_go_relaxed.owl plakoglobin-TCF4 complex|gamma-catenin-TCF4 complex mah 2010-02-12T03:23:08Z cellular_component owl:Class GO:0071664 biolink:NamedThing catenin-TCF7L2 complex A protein complex that contains a catenin and TCF7L2 (TCF4), binds to the TCF DNA motif within a promoter element, and is involved in the regulation of WNT target gene transcription. tmpzr1t_l9r_go_relaxed.owl catenin-TCF4 complex mah 2010-02-12T03:19:16Z cellular_component owl:Class GO:0042700 biolink:NamedThing luteinizing hormone signaling pathway The series of molecular signals mediated by luteinizing hormone. tmpzr1t_l9r_go_relaxed.owl luteinizing hormone signalling pathway biological_process owl:Class GO:0033892 biolink:NamedThing deoxyribonuclease (pyrimidine dimer) activity Catalysis of the endonucleolytic cleavage near pyrimidine dimers to products with 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl endodeoxyribonuclease (pyrimidine dimer) activity|T4 endonuclease V activity|bacteriophage T4 endodeoxyribonuclease V activity MetaCyc:3.1.25.1-RXN|EC:3.1.25.1 molecular_function owl:Class GO:0016890 biolink:NamedThing site-specific endodeoxyribonuclease activity, specific for altered base Catalysis of the hydrolysis of ester linkages at specific sites within a deoxyribonucleic acid molecule by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl EC:3.1.25.- molecular_function owl:Class GO:0015454 biolink:NamedThing light-driven active transmembrane transporter activity Primary active transport of a solute across a membrane, driven by light. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source. tmpzr1t_l9r_go_relaxed.owl Light absorption-driven transporters|light-driven pumps TC:3.E molecular_function owl:Class GO:1903249 biolink:NamedThing negative regulation of citrulline biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of citrulline biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of citrulline anabolism|downregulation of citrulline biosynthetic process|down-regulation of citrulline synthesis|down-regulation of citrulline biosynthesis|down regulation of citrulline anabolism|down-regulation of citrulline biosynthetic process|negative regulation of citrulline synthesis|down regulation of citrulline synthesis|inhibition of citrulline biosynthetic process|downregulation of citrulline biosynthesis|inhibition of citrulline formation|negative regulation of citrulline formation|inhibition of citrulline synthesis|down-regulation of citrulline anabolism|down-regulation of citrulline formation|downregulation of citrulline synthesis|inhibition of citrulline biosynthesis|inhibition of citrulline anabolism|down regulation of citrulline formation|negative regulation of citrulline anabolism|downregulation of citrulline formation|down regulation of citrulline biosynthesis|down regulation of citrulline biosynthetic process|negative regulation of citrulline biosynthesis rl 2014-08-04T15:24:46Z biological_process owl:Class GO:0075004 biolink:NamedThing adhesion of symbiont spore to host The attachment of a spore of the symbiont to its host via adhesion molecules, general stickiness etc. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont spore to host during symbiotic interaction Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:1990851 biolink:NamedThing Wnt-Frizzled-LRP5/6 complex A protein complex containing a secreted Wnt protein associated with its receptor, Frizzled (Fz), and co-receptor low density lipoprotein receptor-related protein 5 (LRP5) or LRP6. tmpzr1t_l9r_go_relaxed.owl Frizzled-LRP5/6 complex|Wnt.Fz.LRP ternary complex|Fz/Wnt/LRP6 complex|WNT-FZD-LRP6 complex|Wnt-FZD-LRP5/6 trimeric complex|WNT-FZD-LRP5 complex|Wnt receptor complex|Wnt-induced Frizzled-LRP5/6 complex Given the number of Wnt proteins, Frizzled proteins and LRP proteins, many different trimeric complexes are likely to form. bf 2015-09-14T15:59:54Z cellular_component owl:Class GO:0046369 biolink:NamedThing galactose biosynthetic process The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose. tmpzr1t_l9r_go_relaxed.owl galactose anabolism|galactose synthesis|galactose biosynthesis|galactose formation biological_process owl:Class GO:0005590 biolink:NamedThing collagen type VII trimer A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010875 biolink:NamedThing positive regulation of cholesterol efflux Any process that increases the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045626 biolink:NamedThing negative regulation of T-helper 1 cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper 1 cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of T-helper 1 cell differentiation|negative regulation of T-helper 1 cell development|down regulation of T-helper 1 cell differentiation|down-regulation of T-helper 1 cell differentiation|downregulation of T-helper 1 cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0060946 biolink:NamedThing cardiac blood vessel endothelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell of the heart. Blood vessel endothelial cells are thin flattened cells that line the inside surfaces of blood vessels. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T02:48:55Z biological_process owl:Class GO:0106049 biolink:NamedThing regulation of cellular response to osmotic stress Any process that modulates the frequency, rate or extent of the cellular response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-04T14:53:47Z biological_process owl:Class GO:0098001 biolink:NamedThing receptor-mediated bacteriophage reversible attachment to host cell Process by which a bacteriophage, using its tail fibers, spikes or a baseplate component, initially recognizes and binds to its specific receptor on the host cell surface. This process is reversible and allows the release of a bacteriophage without affecting infection. tmpzr1t_l9r_go_relaxed.owl phage reversible adsorption|reversible bacteriophage attachment, binding of host cell surface receptor This process was historically defined by the release, by Waring blending or sonication, by dilution and centrifugation, or by filtration and washing, of infective virions from their complexes with cells, thus contrary to what is observed after irreversible adsorption. bm biological_process owl:Class GO:0098671 biolink:NamedThing adhesion receptor-mediated virion attachment to host cell The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface that does not mediate or trigger entry into the host cell. This binding is typically reversible and enhances significantly infectivity by concentrating the virus in the vicinity of its entry receptors, or bringing it to an organ in which its target cells are located. tmpzr1t_l9r_go_relaxed.owl viral attachment to host adhesion receptor VZ:3943 dos 2017-01-16T13:22:54Z biological_process owl:Class GO:0000955 biolink:NamedThing amino acid catabolic process via Ehrlich pathway The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols or carboxylic acids containing one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives, sometimes referred to as fusel acids, may be produced instead of alcohols. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060148 biolink:NamedThing positive regulation of posttranscriptional gene silencing Any process that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045770 biolink:NamedThing positive regulation of asymmetric cell division Any process that activates or increases the frequency, rate or extent of asymmetric cell division. tmpzr1t_l9r_go_relaxed.owl upregulation of asymmetric cell division|stimulation of asymmetric cell division|activation of asymmetric cell division|up-regulation of asymmetric cell division|up regulation of asymmetric cell division biological_process owl:Class GO:0070804 biolink:NamedThing positive regulation of metula development Any process that activates or increases the frequency, rate or extent of metula development, a process that leads to the formation of metulae. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:38:33Z biological_process owl:Class GO:0070497 biolink:NamedThing 6-carboxy-5,6,7,8-tetrahydropterin synthase activity Catalysis of the reaction: 7,8-dihydroneopterin triphosphate + H2O = 6-carboxy-5,6,7,8-tetrahydropterin + triphosphate + acetaldehyde + 2 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:27966|MetaCyc:RXN0-5507|EC:4.1.2.50 molecular_function owl:Class GO:0045967 biolink:NamedThing negative regulation of growth rate Any process that reduces the rate of growth of all or part of an organism. tmpzr1t_l9r_go_relaxed.owl downregulation of growth rate|down regulation of growth rate|inhibition of growth rate|down-regulation of growth rate Note that this term and its definition depart from the usual conventions for GO 'regulation' process terms; regulation of rate is not usually distinguished from regulation of extent or frequency, but it makes sense to do so for growth regulation. biological_process owl:Class GO:0048225 biolink:NamedThing suberin network An extracellular matrix part that consists of fatty acid-derived polymers, including both aromatic and aliphatic components. The suberin network is found in specialized plant cell walls, where it is laid down between the primary wall and plasma membrane, forms protective and wound-healing layers, and provides a water-impermeable diffusion barrier. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0062165 biolink:NamedThing positive regulation of pseudohyphal septin ring assembly Any process that increases the rate, frequency or extent of pseudohyphal septin ring formation. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-07T15:55:38Z biological_process owl:Class GO:0044353 biolink:NamedThing micropinosome A membrane-bounded, uncoated intracellular vesicle formed by the process of micropinocytosis. tmpzr1t_l9r_go_relaxed.owl jl 2011-08-11T10:51:27Z cellular_component owl:Class GO:0044352 biolink:NamedThing pinosome A membrane-bounded, uncoated intracellular vesicle formed by the process of pinocytosis. tmpzr1t_l9r_go_relaxed.owl pinocytic vesicle NIF_Subcellular:sao1925368674 jl 2011-08-11T10:51:13Z cellular_component owl:Class GO:1990148 biolink:NamedThing glutamate dehydrogenase complex A homomeric protein complex that possesses glutamate dehydrogenase activity. This complex is evolutionarily conserved except that the number of homoprotomers per complex varies. tmpzr1t_l9r_go_relaxed.owl glutamate dehydrogenase (NADP+) complex|glutamic dehydrogenase complex|NAD(P)H-dependent glutamate dehydrogenase complex|L-glutamic acid dehydrogenase complex|L-glutamate dehydrogenase complex|glutamic acid dehydrogenase complex|dehydrogenase, glutamate (nicotinamide adenine dinucleotide (phosphate)) complex|L-glutamate:NADP+ oxidoreductase (deaminating) complex|NAD(P)-glutamate dehydrogenase complex pr 2013-07-26T10:14:15Z cellular_component owl:Class GO:0050304 biolink:NamedThing nitrous-oxide reductase activity Catalysis of the reaction: H(2)O + 2 cytochrome c + nitrogen = 2 reduced cytochrome c + nitrous oxide. tmpzr1t_l9r_go_relaxed.owl nitrogen:(acceptor) oxidoreductase (N2O-forming)|nitrous oxide reductase activity|N2O reductase activity|nitrogen:acceptor oxidoreductase (N2O-forming) RHEA:43108|EC:1.7.2.4|KEGG_REACTION:R02804|MetaCyc:RXN-12130 molecular_function owl:Class GO:0000772 biolink:NamedThing mating pheromone activity The activity of binding to and activating specific cell surface receptors, thereby inducing a behavioral or physiological response(s) from a responding organism or cell that leads to the transfer or union of genetic material between organisms or cells. The mating pheromone can either be retained on the cell surface or secreted. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106216 biolink:NamedThing positive regulation of vesicle fusion with Golgi apparatus Any process that activates or increases the frequency, rate or extent of vesicle fusion with Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl hjd 2019-06-27T15:20:59Z biological_process owl:Class GO:1901497 biolink:NamedThing response to diphenyl ether Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diphenyl ether stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T14:58:08Z biological_process owl:Class GO:0030891 biolink:NamedThing VCB complex A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1. tmpzr1t_l9r_go_relaxed.owl VHL complex|von Hippel-Lindau tumor suppressor complex|pVHL-elongin C-elongin B complex cellular_component owl:Class GO:0106024 biolink:NamedThing negative regulation of pupariation Any process that stops, prevents or reduces the rate of onset of pupariation. tmpzr1t_l9r_go_relaxed.owl hjd 2017-05-24T19:35:29Z biological_process owl:Class GO:1903172 biolink:NamedThing cellular carbon dioxide homeostasis Any biological process involved in the maintenance of an internal steady state of carbon dioxide at the level of the cell. tmpzr1t_l9r_go_relaxed.owl mr 2014-07-11T20:58:30Z biological_process owl:Class GO:0000471 biolink:NamedThing endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage within the 3'-External Transcribed Spacer (ETS) of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. In S. cerevisiae, endonucleolytic cleavage within the 3'-ETS of the pre-RNA, which may occur cotranscriptionally, is the first step in rRNA processing, and initiates a cascade of subsequent processing and modification events. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016442 biolink:NamedThing RISC complex A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. tmpzr1t_l9r_go_relaxed.owl RNA-induced silencing complex|micro-ribonucleoprotein complex|miRNP complex Wikipedia:RNA-induced_silencing_complex GO:0035068 cellular_component owl:Class GO:0031332 biolink:NamedThing RNAi effector complex Any protein complex that mediates the effects of small interfering RNAs on gene expression. Most known examples contain one or more members of the Argonaute family of proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060766 biolink:NamedThing negative regulation of androgen receptor signaling pathway Any process that decreases the rate, frequency, or extent of the androgen receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of androgen receptor signalling pathway dph 2009-07-06T11:09:36Z biological_process owl:Class GO:0061292 biolink:NamedThing canonical Wnt signaling pathway involved in mesonephros development The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the progression of the mesonephros over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in mesonephros development|canonical Wnt-activated signaling pathway involved in mesonephros development|canonical Wnt receptor signalling pathway involved in mesonephros development dph 2010-09-03T12:23:09Z biological_process owl:Class GO:0003176 biolink:NamedThing aortic valve development The progression of the aortic valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:18:55Z biological_process owl:Class GO:0002602 biolink:NamedThing negative regulation of antigen processing and presentation of polysaccharide antigen via MHC class II Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of polysaccharide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl downregulation of antigen processing and presentation of polysaccharide antigen via MHC class II|down-regulation of antigen processing and presentation of polysaccharide antigen via MHC class II|negative regulation of polysaccharide antigen processing and presentation via MHC class II|down regulation of antigen processing and presentation of polysaccharide antigen via MHC class II|inhibition of antigen processing and presentation of polysaccharide antigen via MHC class II biological_process owl:Class GO:0061577 biolink:NamedThing calcium ion transmembrane transport via high voltage-gated calcium channel A process in which a calcium ion is transported from one side of a membrane to the other by means of a high voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl generation of L-type calcium current dph 2013-11-15T16:20:27Z biological_process owl:Class GO:1902959 biolink:NamedThing regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process Any process that modulates the frequency, rate or extent of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|regulation of aspartic protease activity involved in amyloid precursor protein breakdown|regulation of aspartic endopeptidase activity involved in APP catabolism|regulation of aspartic endopeptidase activity involved in amyloid precursor protein degradation|regulation of aspartic-type endopeptidase activity involved in APP catabolic process|regulation of aspartic endopeptidase activity involved in APP catabolic process|regulation of aspartate protease activity involved in amyloid precursor protein breakdown|regulation of aspartate protease activity involved in amyloid precursor protein degradation|regulation of aspartyl protease activity involved in APP catabolism|regulation of aspartyl protease activity involved in amyloid precursor protein catabolism|regulation of aspartyl protease activity involved in amyloid precursor protein breakdown|regulation of aspartate protease activity involved in amyloid precursor protein catabolism|regulation of aspartyl protease activity involved in APP catabolic process|regulation of carboxyl protease activity involved in APP catabolic process|regulation of aspartic protease activity involved in amyloid precursor protein catabolism|regulation of aspartic protease activity involved in amyloid precursor protein catabolic process|regulation of aspartic endopeptidase activity involved in amyloid precursor protein breakdown|regulation of aspartic protease activity involved in APP catabolism|regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|regulation of aspartate protease activity involved in APP catabolism|regulation of aspartic protease activity involved in amyloid precursor protein degradation|regulation of carboxyl protease activity involved in amyloid precursor protein degradation|regulation of aspartyl protease activity involved in amyloid precursor protein degradation|regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|regulation of carboxyl protease activity involved in amyloid precursor protein breakdown|regulation of aspartic protease activity involved in APP catabolic process|regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|regulation of aspartate protease activity involved in amyloid precursor protein catabolic process|regulation of aspartic endopeptidase activity involved in amyloid precursor protein catabolism|regulation of carboxyl protease activity involved in amyloid precursor protein catabolism|regulation of aspartic-type endopeptidase activity involved in APP catabolism|regulation of carboxyl protease activity involved in APP catabolism|regulation of aspartyl protease activity involved in amyloid precursor protein catabolic process|regulation of carboxyl protease activity involved in amyloid precursor protein catabolic process|regulation of aspartate protease activity involved in APP catabolic process sjp 2014-05-06T09:07:04Z biological_process owl:Class GO:0051559 biolink:NamedThing phlobaphene biosynthetic process The chemical reactions and pathways resulting in the formation of phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007390 biolink:NamedThing germ-band shortening The spreading of the amnioserosa from its compressed state to cover the whole of the dorsal surface. Initiating in the thorax and spreading posteriorly, it is accompanied by the transition from a parasegmental to segmental division of the embryo. tmpzr1t_l9r_go_relaxed.owl germ-band retraction biological_process owl:Class GO:1904560 biolink:NamedThing response to diphenidol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diphenidol stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-08-14T16:09:31Z biological_process owl:Class GO:0072297 biolink:NamedThing specification of metanephric proximal tubule identity The process in which the proximal tubule of the metanephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T04:08:20Z biological_process owl:Class GO:1903185 biolink:NamedThing L-dopa biosynthetic process The chemical reactions and pathways resulting in the formation of L-dopa. tmpzr1t_l9r_go_relaxed.owl L-dopa biosynthesis|L-dopa formation|L-dopa synthesis|L-dopa anabolism bf 2014-07-14T15:06:06Z biological_process owl:Class GO:0046687 biolink:NamedThing response to chromate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chromate stimulus. tmpzr1t_l9r_go_relaxed.owl chromate sensitivity/resistance biological_process owl:Class GO:0052063 biolink:NamedThing induction by symbiont of defense-related host nitric oxide production The activation by a symbiont of the production of nitric oxide as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related host NO production|up-regulation by symbiont of defense-related host nitric oxide production|induction by organism of defense-related host NO production|stimulation by symbiont of defense-related host nitric oxide production|up regulation by symbiont of defense-related host nitric oxide production|activation by organism of defense-related host NO production|upregulation by symbiont of defense-related host nitric oxide production|induction by organism of defense-related nitric oxide production in other organism involved in symbiotic interaction|positive regulation by organism of defense-related nitric oxide production in other organism involved in symbiotic interaction|activation by symbiont of defense-related host nitric oxide production|positive regulation by symbiont of defense-related host nitric oxide production|activation by organism of defense-related host nitric oxide production GO:0052263|GO:0052345|GO:0052347 biological_process owl:Class GO:1905357 biolink:NamedThing negative regulation of snRNA pseudouridine synthesis Any process that stops, prevents or reduces the frequency, rate or extent of snRNA pseudouridine synthesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of snRNA pseudouridine synthesis|down regulation of snRNA pseudouridine synthesis|inhibition of snRNA pseudouridine synthesis|downregulation of snRNA pseudouridine synthesis se 2016-08-09T19:12:35Z biological_process owl:Class GO:0001512 biolink:NamedThing dihydronicotinamide riboside quinone reductase activity Catalysis of the reaction: 1-(beta-D-ribofuranosyl)-1,4-dihydronicotinamide + a quinone = 1-(beta-D-ribofuranosyl)nicotinamide + a hydroquinone. tmpzr1t_l9r_go_relaxed.owl ribosyldihydronicotinamide dehydrogenase (quinone) activity|NRH:quinone oxidoreductase 2 activity|NQO2|QR2 activity|NQO(2) activity|quinone reductase 2 activity|N-ribosyldihydronicotinamide dehydrogenase (quinone) activity https://github.com/geneontology/go-ontology/issues/21412 RHEA:12364|Reactome:R-HSA-8936519|MetaCyc:1.10.99.2-RXN|EC:1.10.5.1 Formerly EC:1.10.99.2. molecular_function owl:Class GO:0008811 biolink:NamedThing chloramphenicol O-acetyltransferase activity Catalysis of the reaction: chloramphenicol + acetyl-CoA = chloramphenicol 3-acetate + CoA. tmpzr1t_l9r_go_relaxed.owl chloramphenicol transacetylase activity|chloramphenicol acetylase activity|chloramphenicol acetyltransferase activity|CAT III|CAT I|acetyl-CoA:chloramphenicol 3-O-acetyltransferase activity|CAT II EC:2.3.1.28|RHEA:18421|KEGG_REACTION:R03065|MetaCyc:CHLORAMPHENICOL-O-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0017013 biolink:NamedThing protein flavinylation The addition of a flavin group to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid flavinylation biological_process owl:Class GO:0014909 biolink:NamedThing smooth muscle cell migration The orderly movement of a smooth muscle cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990119 biolink:NamedThing RNA helicase inhibitor activity Binds to and stops, prevents or reduces the activity of an RNA helicase. tmpzr1t_l9r_go_relaxed.owl ATP-dependent RNA helicase inhibitor activity rb 2013-06-11T21:14:38Z molecular_function owl:Class GO:0050829 biolink:NamedThing defense response to Gram-negative bacterium Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl defence response to Gram-negative bacteria|Gram-negative antibacterial peptide activity|defence response to Gram-negative bacterium|defense response to Gram-negative bacteria biological_process owl:Class GO:0004990 biolink:NamedThing oxytocin receptor activity Combining with oxytocin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0039636 biolink:NamedThing suppression by virus of host cell wall biogenesis Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of cell wall biogenesis in the host organism. Cell wall biogenesis includes the biosynthesis of constituent macromolecules, and the assembly and arrangement of these constituent parts. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-10T15:04:12Z biological_process owl:Class GO:0033464 biolink:NamedThing GGG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GGG codon. tmpzr1t_l9r_go_relaxed.owl glycine tRNA Note that in the standard genetic code, GGG codes for glycine. molecular_function owl:Class GO:0035752 biolink:NamedThing lysosomal lumen pH elevation Any process that increases the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl lysosome pH elevation bf 2011-03-23T10:24:24Z biological_process owl:Class GO:0044688 biolink:NamedThing 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate phosphodiesterase activity Catalysis of the reaction: 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate + H2O = 7,8-dihydroneopterin 3'-phosphate + H+. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-15T14:28:30Z molecular_function owl:Class GO:0106146 biolink:NamedThing sideretin biosynthesis The chemical reactions and pathways resulting in the formation of sideretin. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-07T18:31:30Z biological_process owl:Class GO:0047062 biolink:NamedThing trans-acenaphthene-1,2-diol dehydrogenase activity Catalysis of the reaction: (+-)-trans-acenaphthene-1,2-diol + 2 NADP(+) = acenaphthene-1,2-dione + 2 H(+) + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl trans-1,2-acenaphthenediol dehydrogenase activity|(+-)-trans-acenaphthene-1,2-diol:NADP+ oxidoreductase activity RHEA:22184|KEGG_REACTION:R04059|MetaCyc:1.10.1.1-RXN|EC:1.10.1.1 molecular_function owl:Class GO:0016680 biolink:NamedThing oxidoreductase activity, acting on diphenols and related substances as donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.10.1.- molecular_function owl:Class GO:0045669 biolink:NamedThing positive regulation of osteoblast differentiation Any process that activates or increases the frequency, rate or extent of osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl activation of osteoblast differentiation|stimulation of osteoblast differentiation|up regulation of osteoblast differentiation|upregulation of osteoblast differentiation|up-regulation of osteoblast differentiation biological_process owl:Class GO:0060422 biolink:NamedThing peptidyl-dipeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of a peptidyl-dipeptidase. Peptidyl-dipeptidase activity catalyzes the release of C-terminal dipeptides from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004820 biolink:NamedThing glycine-tRNA ligase activity Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). tmpzr1t_l9r_go_relaxed.owl glycyl-transfer RNA synthetase activity|glycyl-tRNA synthetase activity|glycyl translase activity|glycyl-transfer ribonucleate synthetase activity|glycine:tRNAGly ligase (AMP-forming) activity|glycyl-transfer ribonucleic acid synthetase activity MetaCyc:GLYCINE--TRNA-LIGASE-RXN|RHEA:16013|EC:6.1.1.14|Reactome:R-HSA-380240|Reactome:R-HSA-380048 molecular_function owl:Class GO:0102296 biolink:NamedThing 4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase activity Catalysis of the reaction: (1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1(10),2-dien-4-oate + H2O <=> 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oate + (2Z,4Z)-2-hydroxyhexa-2,4-dienoate + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.7.1.17|MetaCyc:RXN-12718|RHEA:32035 molecular_function owl:Class GO:0022874 biolink:NamedThing protein-N(PI)-phosphohistidine-cellobiose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + cellobiose(out) = protein histidine + cellobiose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl cellobiose PTS transporter activity molecular_function owl:Class GO:0030327 biolink:NamedThing prenylated protein catabolic process The chemical reactions and pathways resulting in the breakdown of prenylated proteins. tmpzr1t_l9r_go_relaxed.owl prenylated protein catabolism|prenylated protein breakdown|prenylated protein degradation biological_process owl:Class GO:0019650 biolink:NamedThing glycolytic fermentation to butanediol The anaerobic chemical reactions and pathways resulting in the breakdown of glucose into butanediol; effected by some members of the Enterobacteriaceae, e.g. Enterobacter, Erwinia, Klebsiella, and Serratia. tmpzr1t_l9r_go_relaxed.owl butanediol fermentation|glucose catabolic process to butanediol|glucose fermentation to butanediol MetaCyc:P125-PWY|Wikipedia:Butanediol_fermentation GO:0030646 biological_process owl:Class GO:0034953 biolink:NamedThing perillyl-CoA hydratase activity Catalysis of the reaction: perillyl-CoA + H2O = 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1002 molecular_function owl:Class GO:1903855 biolink:NamedThing positive regulation of stress response to copper ion Any process that activates or increases the frequency, rate or extent of stress response to copper ion. tmpzr1t_l9r_go_relaxed.owl up regulation of stress response to copper ion|activation of stress response to copper ion|up-regulation of response to copper toxicity|up regulation of response to copper ion stress|up regulation of response to copper toxicity|activation of response to copper toxicity|upregulation of stress response to copper ion|positive regulation of response to copper ion stress|positive regulation of response to copper toxicity|up-regulation of stress response to copper ion|activation of response to copper ion stress|up-regulation of response to copper ion stress|upregulation of response to copper toxicity|upregulation of response to copper ion stress kmv 2015-01-29T20:15:42Z biological_process owl:Class GO:0052628 biolink:NamedThing 4-hydroxybenzoate amino acid synthetase activity Catalysis of the reaction: 4-hydroxybenzoate + ATP + amino acid = 4-hydroxybenzoyl amino acid conjugate + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl p-hydroxybenzoate amino acid synthetase activity|p-hydroxybenzoyl amino acid synthetase activity|4-hydroxybenzoyl amino acid synthetase activity|4HBA amino acid synthetase activity molecular_function owl:Class GO:0047209 biolink:NamedThing coniferyl-alcohol glucosyltransferase activity Catalysis of the reaction: coniferyl alcohol + UDP-D-glucose = coniferin + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:coniferyl-alcohol 4'-beta-D-glucosyltransferase activity|uridine diphosphoglucose-coniferyl alcohol glucosyltransferase activity|UDP-glucose coniferyl alcohol glucosyltransferase activity|UDP-glucose:coniferyl-alcohol 4'-beta-D-glucosyltransferase activity RHEA:23944|EC:2.4.1.111|MetaCyc:2.4.1.111-RXN molecular_function owl:Class GO:0060101 biolink:NamedThing negative regulation of phagocytosis, engulfment Any process that stops, prevents, or reduces the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005604 biolink:NamedThing basement membrane A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers. tmpzr1t_l9r_go_relaxed.owl lamina densa|basement lamina|basal lamina Wikipedia:Basement_membrane Note that this term has no relationship to 'membrane ; GO:0016020' because the basement membrane is not a lipid bilayer. GO:0005605|GO:0008003 cellular_component owl:Class GO:1903545 biolink:NamedThing cellular response to butyrate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butyrate stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-10-17T13:57:35Z biological_process owl:Class GO:0033501 biolink:NamedThing galactose homeostasis A homeostatic process involved in the maintenance of an internal steady state of galactose within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018139 biolink:NamedThing peptide cross-linking via L-phenylalanine thiazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl phenylalanine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0243 biological_process owl:Class GO:0010789 biolink:NamedThing meiotic sister chromatid cohesion involved in meiosis I The cell cycle process in which sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis I. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038037 biolink:NamedThing G protein-coupled receptor dimeric complex A protein complex that contains two G protein-coupled receptors. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor dimer|G-protein coupled receptor dimeric complex|GPCR dimer bf 2011-11-02T04:42:44Z cellular_component owl:Class GO:1903268 biolink:NamedThing positive regulation of ornithine catabolic process Any process that activates or increases the frequency, rate or extent of ornithine catabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of ornithine catabolic process|upregulation of ornithine breakdown|activation of ornithine breakdown|up-regulation of ornithine breakdown|up regulation of ornithine catabolism|up regulation of ornithine degradation|up-regulation of ornithine catabolism|positive regulation of ornithine catabolism|activation of ornithine degradation|up-regulation of ornithine catabolic process|activation of ornithine catabolic process|upregulation of ornithine catabolism|positive regulation of ornithine degradation|activation of ornithine catabolism|up-regulation of ornithine degradation|up regulation of ornithine breakdown|up regulation of ornithine catabolic process|upregulation of ornithine degradation|positive regulation of ornithine breakdown bhm 2014-08-08T08:29:50Z biological_process owl:Class GO:1901151 biolink:NamedThing vistamycin catabolic process The chemical reactions and pathways resulting in the breakdown of vistamycin. tmpzr1t_l9r_go_relaxed.owl vistamycin catabolism|ribostamycin degradation|ribostamycin catabolism|vistamycin degradation|ribostamycin breakdown|vistamycin breakdown|ribostamycin catabolic process yaf 2012-07-17T04:27:07Z biological_process owl:Class GO:0097300 biolink:NamedThing programmed necrotic cell death A necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors. tmpzr1t_l9r_go_relaxed.owl programmed cell death by necrosis|regulated necrosis This term may be used when annotating instances of programmed cell death characterized by necrotic morphology where the involvement of RIPK1 and/or RIPK3 is not shown. See PMID:23818611 for some examples. pr 2012-05-04T03:03:39Z biological_process owl:Class GO:0070265 biolink:NamedThing necrotic cell death A type of cell death that is morphologically characterized by an increasingly translucent cytoplasm, swelling of organelles, minor ultrastructural modifications of the nucleus (specifically, dilatation of the nuclear membrane and condensation of chromatin into small, irregular, circumscribed patches) and increased cell volume (oncosis), culminating in the disruption of the plasma membrane and subsequent loss of intracellular contents. Necrotic cells do not fragment into discrete corpses as their apoptotic counterparts do. Moreover, their nuclei remain intact and can aggregate and accumulate in necrotic tissues. tmpzr1t_l9r_go_relaxed.owl cellular necrosis|necrosis Note that the word necrosis has been widely used in earlier literature to describe forms of cell death which are now known by more precise terms, such as apoptosis. Necrosis can occur in a regulated fashion, involving a precise sequence of signals; in this case, consider annotating to GO:0097300 'programmed necrotic cell death' or to its more specific child GO:0070266 'necroptotic process'. biological_process owl:Class GO:0070522 biolink:NamedThing ERCC4-ERCC1 complex A heterodimeric nucleotide-excision repair complex that has endonuclease activity specific for bubble structures characteristic of certain DNA lesions. The subunits are known as XPF/ERCC4 and ERCC1 in mammals, and Rad1p and Rad10p in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl Rad1-Rad10 complex|XPF-ERCC1 complex Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0000109 biolink:NamedThing nucleotide-excision repair complex Any complex formed of proteins that act in nucleotide-excision repair. tmpzr1t_l9r_go_relaxed.owl UvrB-UvrC complex|UvrBC complex Note that process information is included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0019711 biolink:NamedThing peptidyl-beta-carboxyaspartic acid biosynthetic process from peptidyl-aspartic acid The chemical reactions and pathways resulting in the formation of peptidyl-beta-carboxyaspartic acid from other compounds, including peptidyl-aspartic acid. tmpzr1t_l9r_go_relaxed.owl peptidyl-beta-carboxyaspartic acid formation from peptidyl-aspartic acid|peptidyl-beta-carboxyaspartic acid anabolism from peptidyl-aspartic acid|peptidyl-beta-carboxyaspartic acid synthesis from peptidyl-aspartic acid biological_process owl:Class GO:0009316 biolink:NamedThing 3-isopropylmalate dehydratase complex A heterodimeric enzyme complex composed of subunits leuC and leuD. Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. tmpzr1t_l9r_go_relaxed.owl isopropylmalate isomerase complex MetaCyc:3-ISOPROPYLMALISOM-CPLX See also the molecular function term '3-isopropylmalate dehydratase activity ; GO:0003861'. cellular_component owl:Class GO:0099635 biolink:NamedThing voltage-gated calcium channel activity involved in positive regulation of presynaptic cytosolic calcium levels Positive regulation of presynaptic cytosolic calcium ion concentrations via the directed movement of calcium ions across the plasma-membrane into the cytosol via the action of voltage-gated calcium ion channels. This is the first step in synaptic transmission. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099626 biolink:NamedThing voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels Regulation of presynaptic cytosolic calcium ion concentrations via the action of voltage-gated calcium ion channels. tmpzr1t_l9r_go_relaxed.owl voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels molecular_function owl:Class GO:0140274 biolink:NamedThing repair of kinetochore microtubule attachment defect The cell cycle process where kinetochore microtubule attachment defects are corrected. tmpzr1t_l9r_go_relaxed.owl repair of kinetochore microtubule attachment defects|correction of kinetochore microtubule attachment defects pg 2018-10-01T11:30:19Z biological_process owl:Class GO:0030513 biolink:NamedThing positive regulation of BMP signaling pathway Any process that activates or increases the frequency, rate or extent of BMP signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of decapentaplegic signaling pathway|positive regulation of BMP signalling pathway|activation of BMP signaling pathway|positive regulation of decapentaplegic receptor signaling pathway|positive regulation of bone morphogenetic protein signalling pathway|up-regulation of BMP signaling pathway|upregulation of BMP signaling pathway|stimulation of BMP signaling pathway|positive regulation of bone morphogenetic protein signaling pathway|positive regulation of decapentaplegic receptor signalling pathway|positive regulation of BMP receptor signaling pathway|up regulation of BMP signaling pathway tb 2009-11-13T10:50:41Z GO:0090098 biological_process owl:Class GO:0062129 biolink:NamedThing chitin-based extracellular matrix Any constituent part of a chitin-based noncellular, hardened, or membranous extracellular matrix secreted from the apical surface of an epithelial sheet. tmpzr1t_l9r_go_relaxed.owl chitin-based ECM dph 2019-06-13T12:57:13Z cellular_component owl:Class GO:0030784 biolink:NamedThing 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3'-hydroxy-N-methyl-(S)-coclaurine = S-adenosyl-L-homocysteine + (S)-reticuline. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase activity MetaCyc:2.1.1.116-RXN|RHEA:17789|EC:2.1.1.116 molecular_function owl:Class GO:1901295 biolink:NamedThing regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment. tmpzr1t_l9r_go_relaxed.owl regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment|regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment|regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment vk 2012-08-21T09:06:32Z biological_process owl:Class GO:0045199 biolink:NamedThing maintenance of epithelial cell apical/basal polarity The maintenance of the apicobasal polarity of an epithelial cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035090 biolink:NamedThing maintenance of apical/basal cell polarity Retaining the established polarization of a cell along its apical/basal axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018442 biolink:NamedThing peptidyl-glutamic acid esterification The addition of an ester group to a glutamic acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036276 biolink:NamedThing response to antidepressant Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antidepressant stimulus, a mood-stimulating drug. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T02:12:44Z biological_process owl:Class GO:0033023 biolink:NamedThing mast cell homeostasis The process of regulating the proliferation and elimination of mast cells such that the total number of mast cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term represents the return of mast cell levels to stable numbers following an immune response as well as the proliferation and elimination of mast cells required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0070719 biolink:NamedThing alphaPDGFR-PLC-gamma-1-PI3K-SHP-2 complex A protein complex that contains the platelet-derived growth factor alpha receptor (alphaPDGFR; PDGFRA), phospholipase C-gamma-1 (PLC-gamma-1), phosphatidylinositol 3-kinase (PI3K) and the adaptor protein SHP-2, and is involved signaling via the PDGFR signaling pathway. tmpzr1t_l9r_go_relaxed.owl PDGFRA-PLC-gamma-1-PI3K-SHP-2 complex, PDGF stimulated mah 2009-06-10T05:04:20Z cellular_component owl:Class GO:0046012 biolink:NamedThing positive regulation of oskar mRNA translation Any process that activates or increases the frequency, rate or extent of oskar mRNA translation. tmpzr1t_l9r_go_relaxed.owl up-regulation of oskar mRNA translation|upregulation of oskar mRNA translation|up regulation of oskar mRNA translation|stimulation of oskar mRNA translation|activation of oskar mRNA translation biological_process owl:Class GO:1900868 biolink:NamedThing sarcinapterin biosynthetic process The chemical reactions and pathways resulting in the formation of sarcinapterin. tmpzr1t_l9r_go_relaxed.owl sarcinapterin formation|sarcinapterin synthesis|sarcinapterin biosynthesis|sarcinapterin anabolism tt 2012-06-12T04:34:33Z biological_process owl:Class GO:0140354 biolink:NamedThing lipid import into cell The directed movement of a lipid from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis. tmpzr1t_l9r_go_relaxed.owl lipid uptake pg 2019-05-22T11:38:15Z biological_process owl:Class GO:0050401 biolink:NamedThing xylonate dehydratase activity Catalysis of the reaction: D-xylonate = 2-dehydro-3-deoxy-D-arabinonate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-xylo-aldonate dehydratase activity|D-xylonate hydro-lyase (2-dehydro-3-deoxy-D-xylonate-forming)|D-xylonate hydro-lyase activity|D-xylonate dehydratase activity MetaCyc:XYLONATE-DEHYDRATASE-RXN|RHEA:19157|KEGG_REACTION:R02429|EC:4.2.1.82 molecular_function owl:Class GO:2000894 biolink:NamedThing cellotriose catabolic process The chemical reactions and pathways resulting in the breakdown of a cellotriose. tmpzr1t_l9r_go_relaxed.owl cellotriose catabolism jl 2011-07-28T02:02:47Z biological_process owl:Class GO:2000893 biolink:NamedThing cellotriose metabolic process The chemical reactions and pathways involving a cellotriose. tmpzr1t_l9r_go_relaxed.owl cellotriose metabolism jl 2011-07-28T02:02:44Z biological_process owl:Class GO:0010289 biolink:NamedThing homogalacturonan biosynthetic process The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-1061 biological_process owl:Class GO:0052325 biolink:NamedThing cell wall pectin biosynthetic process The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. tmpzr1t_l9r_go_relaxed.owl pectin biosynthesis during cell wall organization and biogenesis|cell wall pectin biosynthesis biological_process owl:Class GO:0031228 biolink:NamedThing intrinsic component of Golgi membrane The component of the Golgi membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to Golgi membrane cellular_component owl:Class GO:0008736 biolink:NamedThing L-fucose isomerase activity Catalysis of the reaction: L-fucose = L-fuculose. tmpzr1t_l9r_go_relaxed.owl L-fucose ketol-isomerase activity|L-fucose aldose-ketose-isomerase activity RHEA:17233|EC:5.3.1.25|MetaCyc:FUCISOM-RXN molecular_function owl:Class GO:0046558 biolink:NamedThing arabinan endo-1,5-alpha-L-arabinosidase activity Catalysis of the endohydrolysis of (1->5)-alpha-arabinofuranosidic linkages in (1->5) arabinans. tmpzr1t_l9r_go_relaxed.owl endo-1,5-alpha-L-arabinanase activity|endo-alpha-1,5-arabanase activity|endo-arabanase activity|1,5-alpha-L-arabinan 1,5-alpha-L-arabinanohydrolase activity EC:3.2.1.99|MetaCyc:3.2.1.99-RXN molecular_function owl:Class GO:0008904 biolink:NamedThing hygromycin-B 7''-O-phosphotransferase activity Catalysis of the reaction: ATP + hygromycin B = 7''-O-phosphohygromycin B + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl hygromycin-B kinase activity|destomic acid ring 7''-O-phosphotransferase activity|hygromycin B phosphotransferase activity|ATP:hygromycin-B 7''-O-phosphotransferase activity|APH(7'') activity|hygromycin B kinase activity KEGG_REACTION:R03770|MetaCyc:HYGROMYCIN-B-KINASE-RXN|RHEA:23388|EC:2.7.1.119 molecular_function owl:Class GO:1902049 biolink:NamedThing neosartoricin catabolic process The chemical reactions and pathways resulting in the breakdown of neosartoricin. tmpzr1t_l9r_go_relaxed.owl neosartoricin catabolism|neosartoricin breakdown|neosartoricin degradation di 2013-04-08T20:31:06Z biological_process owl:Class GO:0120068 biolink:NamedThing regulation of stomach fundus smooth muscle contraction Any process that modulates the frequency, rate or extent of any stomach fundus smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:22:52Z biological_process owl:Class GO:0030580 biolink:NamedThing quinone cofactor methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosylmethionine during the synthesis of quinone cofactors such as ubiquinone (coenzyme Q), menaquinone (vitamin K2), plastoquinone and phylloquinone (vitamin K1). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904397 biolink:NamedThing negative regulation of neuromuscular junction development Any process that stops, prevents or reduces the frequency, rate or extent of neuromuscular junction development. tmpzr1t_l9r_go_relaxed.owl negative regulation of neuromuscular junction organization|down-regulation of neuromuscular junction organization|negative regulation of NMJ stability|down-regulation of NMJ stability|down regulation of neuromuscular junction stability|inhibition of neuromuscular junction stability|inhibition of neuromuscular junction development|inhibition of NMJ stability|downregulation of neuromuscular junction development|downregulation of neuromuscular junction organization|down-regulation of neuromuscular junction development|down-regulation of neuromuscular junction stability|inhibition of neuromuscular junction organization|down regulation of NMJ stability|down regulation of neuromuscular junction organization|negative regulation of neuromuscular junction stability|downregulation of NMJ stability|down regulation of neuromuscular junction development|downregulation of neuromuscular junction stability sl 2015-06-23T19:23:48Z biological_process owl:Class GO:0030941 biolink:NamedThing chloroplast targeting sequence binding Binding to a chloroplast targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the chloroplast. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904462 biolink:NamedThing ergosteryl 3-beta-D-glucoside catabolic process The chemical reactions and pathways resulting in the breakdown of ergosteryl 3-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl ergosteryl 3-beta-D-glucoside breakdown|ergosteryl 3-beta-D-glucoside degradation|ergosteryl 3-beta-D-glucoside catabolism mcc 2015-07-09T19:36:25Z biological_process owl:Class GO:0010785 biolink:NamedThing clathrin coating of Golgi vesicle, plasma membrane to endosome targeting The addition of clathrin and adaptor proteins to Golgi membranes during the formation of transport vesicles that will move from the plasma membrane to the endosome, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014717 biolink:NamedThing regulation of satellite cell activation involved in skeletal muscle regeneration Any process that modulates the frequency, rate or extent of satellite cell activation. The satellite cell activation is the process that initiates satellite cell division by causing it to move from quiescence to the G1 stage of the cell cycle. The cell swells and there are a number of other small changes. The cells then start to divide. Following cell division the cells will differentiate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904796 biolink:NamedThing regulation of core promoter binding Any process that modulates the frequency, rate or extent of core promoter binding. tmpzr1t_l9r_go_relaxed.owl nc 2015-11-09T12:32:23Z biological_process owl:Class GO:0034667 biolink:NamedThing integrin alpha3-beta1 complex An integrin complex that comprises one alpha3 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha3-beta1 integrin complex|VLA-3 complex|ITGA3-ITGB1 complex cellular_component owl:Class GO:1904934 biolink:NamedThing negative regulation of cell proliferation in midbrain Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation in midbrain. tmpzr1t_l9r_go_relaxed.owl downregulation of mesencepahalic cell proliferation|negative regulation of mesencepahalic cell proliferation|down regulation of cell proliferation in mesencephalon|downregulation of cell proliferation in midbrain|inhibition of mesencepahalic cell proliferation|negative regulation of cell proliferation in mesencephalon|down-regulation of cell proliferation in mesencephalon|downregulation of cell proliferation in mesencephalon|down-regulation of cell proliferation in midbrain|inhibition of cell proliferation in mesencephalon|down-regulation of mesencepahalic cell proliferation|inhibition of cell proliferation in midbrain|down regulation of cell proliferation in midbrain|down regulation of mesencepahalic cell proliferation bf 2016-02-01T13:16:19Z biological_process owl:Class GO:0042796 biolink:NamedThing snRNA transcription by RNA polymerase III The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase III (Pol III), originating at a Pol III promoter. tmpzr1t_l9r_go_relaxed.owl snRNA transcription from Pol III promoter|snRNA transcription from RNA polymerase III promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0043682 biolink:NamedThing P-type divalent copper transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) -> ADP + phosphate + Cu2+(out). tmpzr1t_l9r_go_relaxed.owl copper exporting ATPase activity|Cu2+-exporting ATPase activity|copper-translocating P-type ATPase activity|copper transmembrane transporter activity, phosphorylative mechanism|Cu(2+)-exporting ATPase activity|copper-exporting ATPase activity|copper-transporting ATPase activity EC:7.2.2.9|Reactome:R-HSA-6803545|Reactome:R-HSA-3697838|Reactome:R-HSA-936895|Reactome:R-HSA-936802|RHEA:10376|MetaCyc:3.6.3.4-RXN GO:0004008 molecular_function owl:Class GO:0034938 biolink:NamedThing pyrrole-2-carboxylate monooxygenase activity Catalysis of the reaction: pryrole-2-carboxylate + NADH + O2 + H+ = 5-hydroxypyrrole-2-carboxylate + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0968|EC:1.14.14.- molecular_function owl:Class GO:0046219 biolink:NamedThing indolalkylamine biosynthetic process The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. tmpzr1t_l9r_go_relaxed.owl indolalkylamine synthesis|indolalkylamine biosynthesis|indolalkylamine anabolism|indolalkylamine formation biological_process owl:Class GO:0019820 biolink:NamedThing P2 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P2 peroxisomes are distinguished from the other subforms on the bases of buoyant density and protein content; they are the least dense of the subforms observed. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P1 peroxisome ; GO:0019819', 'P3 peroxisome ; GO:0019821', 'P4 peroxisome ; GO:0019822', 'P5 peroxisome ; GO:0019823', and 'P6 peroxisome ; GO:0019824'. cellular_component owl:Class GO:1901819 biolink:NamedThing alpha-zeacarotene metabolic process The chemical reactions and pathways involving alpha-zeacarotene. tmpzr1t_l9r_go_relaxed.owl alpha-zeacarotene metabolism yaf 2013-01-22T10:51:02Z biological_process owl:Class GO:1900730 biolink:NamedThing negative regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase-inhibiting opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway|down-regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway|downregulation of adenylate cyclase-inhibiting opioid receptor signaling pathway|inhibition of adenylate cyclase-inhibiting opioid receptor signaling pathway|negative regulation of inhibition of adenylate cyclase activity by opioid receptor signalling pathway|inhibition of opioid receptor-mediated adenylate cyclase inhibition|negative regulation of inhibition of adenylate cyclase activity by opioid receptor signaling pathway bf 2012-05-25T03:21:12Z biological_process owl:Class GO:2000475 biolink:NamedThing negative regulation of opioid receptor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of opioid receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of opioid receptor signalling pathway bf 2011-03-09T09:41:03Z biological_process owl:Class GO:0045294 biolink:NamedThing alpha-catenin binding Binding to catenin complex alpha subunit. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047885 biolink:NamedThing farnesol 2-isomerase activity Catalysis of the reaction: 2-trans,6-trans-farnesol = 2-cis,6-trans-farnesol. tmpzr1t_l9r_go_relaxed.owl farnesol isomerase activity|2-trans,6-trans-farnesol 2-cis-trans-isomerase activity MetaCyc:FARNESOL-2-ISOMERASE-RXN|EC:5.2.1.9|RHEA:13401|KEGG_REACTION:R03265 molecular_function owl:Class GO:0051040 biolink:NamedThing regulation of calcium-independent cell-cell adhesion Any process that modulates the frequency, rate or extent of the attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044666 biolink:NamedThing MLL3/4 complex A protein complex that can methylate lysine-4 of histone H3, and which contains either of the protein subunits MLL3 or MLL4 in mammals, or equivalent in other species. tmpzr1t_l9r_go_relaxed.owl Trr/COMPASS-like complex jl 2012-08-07T14:46:40Z cellular_component owl:Class GO:0048353 biolink:NamedThing primary endosperm nucleus Nucleus resulting from the fusion of the male gamete and two polar nuclei in the central cell of the embryo sac. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072334 biolink:NamedThing UDP-galactose transmembrane transport The process in which UDP-galactose is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl UDP-galactose membrane transport|UDP-galactose transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-11-03T02:03:36Z GO:0015785 biological_process owl:Class GO:0043827 biolink:NamedThing tRNA (adenine-57, 58-N(1)-) methyltransferase activity Catalysis of the methylation of adenine-57 and adenine-58 in the T-loop of tRNA. tmpzr1t_l9r_go_relaxed.owl TrmI|tRNA (adenine-57, 58-N1-) methyltransferase activity|tRNA (adenine-57, 58 N1-) methyltransferase activity|tRNA (m1A) MTase molecular_function owl:Class GO:0016429 biolink:NamedThing tRNA (adenine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methyladenine. tmpzr1t_l9r_go_relaxed.owl adenine-1-methylase activity|S-adenosyl-L-methionine:tRNA (adenine-1-N-)-methyltransferase activity|1-methyladenine transfer RNA methyltransferase activity|transfer ribonucleate adenine 1-methyltransferase activity|transfer RNA (adenine-1) methyltransferase activity|S-adenosyl-L-methionine:tRNA (adenine-N1-)-methyltransferase activity Reactome:R-HSA-6787594|Reactome:R-HSA-6787525|Reactome:R-HSA-6783492 molecular_function owl:Class GO:0061848 biolink:NamedThing cellular response to cholecystokinin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholecystokinin stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008444 biolink:NamedThing CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity Catalysis of the reaction: sn-glycerol 3-phosphate + CDP-diacylglycerol = 3-(3-sn-phosphatidyl)-sn-glycerol 1-phosphate + CMP + H(+). tmpzr1t_l9r_go_relaxed.owl 3-phosphatidyl-1'-glycerol-3'-phosphate synthase activity|phosphatidylglycerophosphate synthase activity|glycerol phosphate phosphatidyltransferase activity|phosphatidylglycerolphosphate synthase activity|PGP synthase activity|phosphatidylglycerol phosphate synthase activity|glycerophosphate phosphatidyltransferase activity|CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase activity|CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase activity|phosphatidylglycerol phosphate synthetase activity|CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase activity|CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase activity|sn-glycerol-3-phosphate phosphatidyltransferase activity|phosphatidylglycerophosphate synthetase activity|CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):sn-glycerol-3-phosphate phosphatidyltransferase activity|glycerol 3-phosphate phosphatidyltransferase activity EC:2.7.8.5|KEGG_REACTION:R01801|Reactome:R-HSA-1482939|RHEA:12593|MetaCyc:PHOSPHAGLYPSYN-RXN molecular_function owl:Class GO:0050270 biolink:NamedThing S-adenosylhomocysteine deaminase activity Catalysis of the reaction: S-adenosyl-L-homocysteine + H(2)O + H(+) = S-inosyl-L-homocysteine + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl adenosylhomocysteine deaminase activity|S-adenosyl-L-homocysteine aminohydrolase activity KEGG_REACTION:R00193|EC:3.5.4.28|MetaCyc:S-ADENOSYLHOMOCYSTEINE-DEAMINASE-RXN|RHEA:20716 molecular_function owl:Class GO:0032466 biolink:NamedThing negative regulation of cytokinesis Any process that stops, prevents, or reduces the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells. tmpzr1t_l9r_go_relaxed.owl downregulation of cytokinesis|negative regulation of cell cycle cytokinesis|down regulation of cytokinesis|inhibition of cytokinesis|down-regulation of cytokinesis GO:0071776 biological_process owl:Class GO:1900276 biolink:NamedThing regulation of proteinase activated receptor activity Any process that modulates the frequency, rate or extent of proteinase activated receptor activity. tmpzr1t_l9r_go_relaxed.owl rl 2012-04-04T01:31:20Z biological_process owl:Class GO:0046842 biolink:NamedThing trisporic acid biosynthetic process The chemical reactions and pathways resulting in the formation of trisporic acid. tmpzr1t_l9r_go_relaxed.owl trisporic acid anabolism|trisporic acid synthesis|trisporic acid biosynthesis|trisporic acid formation biological_process owl:Class GO:0046841 biolink:NamedThing trisporic acid metabolic process The chemical reactions and pathways involving trisporic acid, a carotenoic acid derivative used as a pheromone in some species of Zygomycota. tmpzr1t_l9r_go_relaxed.owl trisporic acid metabolism biological_process owl:Class GO:0030922 biolink:NamedThing peptidyl-tyrosine dehydrogenation to form (E)-2,3-didehydrotyrosine The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-(E)-2,3-didehydrotyrosine coupled with cyclization of neighboring residues. tmpzr1t_l9r_go_relaxed.owl RESID:AA0365 biological_process owl:Class GO:0007430 biolink:NamedThing terminal branching, open tracheal system Formation of terminal branches in the open tracheal system. These are long cytoplasmic extensions that form fine tubules that transport oxygen directly to the tissues. An example of the process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl terminal branching of trachea, cytoplasmic projection extension biological_process owl:Class GO:0080003 biolink:NamedThing thalianol metabolic process The chemical reactions and pathways involving the triterpene thalianol. tmpzr1t_l9r_go_relaxed.owl thalianol metabolism biological_process owl:Class GO:1990134 biolink:NamedThing epithelial cell apoptotic process involved in palatal shelf morphogenesis An apoptotic process in a palatal shelf epithelial cell that contributes to the shaping of the palatal shelf. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-26T11:56:00Z biological_process owl:Class GO:0044363 biolink:NamedThing modulation of potassium channel activity in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of a potassium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-27T02:19:32Z biological_process owl:Class GO:0051075 biolink:NamedThing S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity Catalysis of the reaction: S-adenosylmethionine + 7-(aminomethyl)-7-deazaguanosine-tRNA = adenine + methionine + epoxyqueuosine-tRNA. 7-(aminomethyl)-7-deazaguanosine-tRNA is also known as preQ1-tRNA, and epoxyqueuosine-tRNA as oQ-tRNA. tmpzr1t_l9r_go_relaxed.owl S-adenosyl methionine:tRNA ribosyltransferase-isomerase activity EC:2.4.99.17|RHEA:32155 molecular_function owl:Class GO:0140618 biolink:NamedThing ferric-chelate reductase (NADH) activity Catalysis of the reaction: 2 Fe3+-siderophore + NAD(+) + H(+) -> 2 Fe2+-siderophore + NADH. tmpzr1t_l9r_go_relaxed.owl NADH:Fe3+ oxidoreductase activity|ferric chelate reductase activity|iron chelate reductase activity|NADH:Fe(3+) oxidoreductase activity https://github.com/geneontology/go-ontology/issues/21029 MetaCyc:FERRIC-CHELATE-REDUCTASE-RXN|RHEA:15061|EC:1.16.1.7 pg 2021-03-09T07:20:30Z molecular_function owl:Class GO:0047694 biolink:NamedThing barbiturase activity Catalysis of the reaction: barbiturate + H2O = malonate + urea. tmpzr1t_l9r_go_relaxed.owl barbiturate amidohydrolase (3-oxo-3-ureidopropanoate-forming) RHEA:18653|MetaCyc:BARBITURASE-RXN|EC:3.5.2.1 molecular_function owl:Class GO:0140217 biolink:NamedThing positive regulation of D-aspartate import across plasma membrane Any process that activates or increases the frequency, rate or extent of the directed import of D-aspartate from the extracellular region across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15041 pg 2018-04-11T15:45:22Z biological_process owl:Class GO:0075316 biolink:NamedThing negative regulation of basidium development Any process that stops, prevents, or reduces the frequency, rate or extent of basidium development, a process that leads to the formation of basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to basidiomycetes and distinguishes them from other kinds of fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047903 biolink:NamedThing fructose 5-dehydrogenase (NADP+) activity Catalysis of the reaction: D-fructose + NADP+ = 5-dehydro-D-fructose + NADPH. tmpzr1t_l9r_go_relaxed.owl 5-ketofructose reductase (NADP(+)) activity|fructose 5-(nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|D-fructose:NADP+ 5-oxidoreductase activity|5-ketofructose reductase (NADP)|5-keto-D-fructose reductase (NADP+)|D-(-)fructose:(NADP+) 5-oxidoreductase activity|5-ketofructose reductase (NADP+) activity RHEA:14069|EC:1.1.1.124|MetaCyc:FRUCTOSE-5-DEHYDROGENASE-NADP+-RXN molecular_function owl:Class GO:0034014 biolink:NamedThing response to triglyceride Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triglyceride stimulus. tmpzr1t_l9r_go_relaxed.owl response to triacylglycerol|response to triacylglyceride biological_process owl:Class GO:0099538 biolink:NamedThing synaptic signaling via neuropeptide Cell-cell signaling to or from a synapse, mediated by a peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006194 biolink:NamedThing dIDP phosphorylation The process of introducing a phosphate group into dIDP, deoxyinosine diphosphate, to produce dITP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990229 biolink:NamedThing iron-sulfur cluster assembly complex A protein complex capable of assembling an iron-sulfur (Fe-S) cluster. tmpzr1t_l9r_go_relaxed.owl SufBCD complex|Fe-S cluster assembly complex bhm 2013-11-12T09:15:03Z cellular_component owl:Class GO:0018146 biolink:NamedThing keratan sulfate biosynthetic process The chemical reactions and pathways resulting in the formation of keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues. tmpzr1t_l9r_go_relaxed.owl keratan sulphate biosynthesis|keratan sulfate anabolism|keratan sulfate formation|keratan sulfate biosynthesis|keratan sulphate biosynthetic process|keratan sulfate synthesis RESID:AA0247 biological_process owl:Class GO:0030713 biolink:NamedThing ovarian follicle cell stalk formation Development of ovarian follicle cells to create the interfollicular stalks that connect the egg chambers of progressive developmental stages. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010305 biolink:NamedThing leaf vascular tissue pattern formation Vascular tissue pattern formation as it occurs in the leaf of vascular plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045652 biolink:NamedThing regulation of megakaryocyte differentiation Any process that modulates the frequency, rate or extent of megakaryocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031505 biolink:NamedThing fungal-type cell wall organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl chitin- and beta-glucan-containing cell wall organisation|fungal-type cell wall organization and biogenesis|chitin-containing cell wall organization and biogenesis|chitin- and beta-glucan-containing cell wall organization and biogenesis|beta-glucan-containing cell wall organization and biogenesis biological_process owl:Class GO:0071852 biolink:NamedThing fungal-type cell wall organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a fungal-type cell wall. tmpzr1t_l9r_go_relaxed.owl fungal-type cell wall organization and biogenesis|fungal-type cell wall organisation or biogenesis mah 2010-09-10T03:07:55Z biological_process owl:Class GO:0050302 biolink:NamedThing indole-3-acetaldehyde oxidase activity Catalysis of the reaction: (indol-3-yl)acetaldehyde + H(2)O + O(2) = (indol-3-yl)acetate + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl AO1|(indol-3-yl)acetaldehyde:oxygen oxidoreductase activity|IAA oxidase activity|indole-3-acetaldehyde:oxygen oxidoreductase activity|indoleacetaldehyde oxidase activity|IAAld oxidase activity MetaCyc:INDOLE-3-ACETALDEHYDE-OXIDASE-RXN|EC:1.2.3.7|RHEA:16277|KEGG_REACTION:R02681 molecular_function owl:Class GO:1901050 biolink:NamedThing atropine catabolic process The chemical reactions and pathways resulting in the breakdown of atropine. tmpzr1t_l9r_go_relaxed.owl atropine catabolism|atropine breakdown|atropine degradation yaf 2012-06-28T04:51:51Z biological_process owl:Class GO:0002773 biolink:NamedThing B cell inhibitory signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of a B cell capable of inhibiting an immune effector process contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl B-cell inhibitory signaling pathway|B cell inhibitory signalling pathway|B lymphocyte inhibitory signaling pathwayBT-lymphocyte inhibitory signaling pathway biological_process owl:Class GO:0106157 biolink:NamedThing peptidyl-arginine 3-dioxygenase activity Catalyzes the reaction: 2-oxoglutarate + [protein]-L-arginine + O2 = [protein]-(3R)-3-hydroxy-L-arginine + CO2 + succinate. tmpzr1t_l9r_go_relaxed.owl L-arginine 3-hydroxylase activity https://github.com/geneontology/go-ontology/issues/16689 RHEA:56744 hjd 2018-11-26T15:05:57Z GO:0140554 molecular_function owl:Class GO:2000527 biolink:NamedThing regulation of myeloid dendritic cell chemotaxis Any process that modulates the frequency, rate or extent of myeloid dendritic cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-03-23T12:18:32Z biological_process owl:Class GO:0019436 biolink:NamedThing sophorosyloxydocosanoate catabolic process The chemical reactions and pathways resulting in the breakdown of sophorosyloxydocosanoate, 13-sophorosyloxydocosanoate 6',6''-diacetate. tmpzr1t_l9r_go_relaxed.owl sophorosyloxydocosanoate catabolism|sophorosyloxydocosanoate degradation|sophorosyloxydocosanoate breakdown MetaCyc:SOPHOROSYLOXYDOCOSANOATE-DEG-PWY biological_process owl:Class GO:0033580 biolink:NamedThing protein galactosylation at cell surface The addition of a galactose unit to a protein amino acid at the surface of a cell. tmpzr1t_l9r_go_relaxed.owl protein amino acid galactosylation at cell surface biological_process owl:Class GO:0034099 biolink:NamedThing luminal surveillance complex A multiprotein complex that recognizes ERAD-luminal misfolded substrates and brings them to the ubiquitination/extraction machinery. In yeast, this complex consists of Yos9p, Kar2p and Hrd3p proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905166 biolink:NamedThing negative regulation of lysosomal protein catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of lysosomal protein catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of lysosomal protein degradation|inhibition of lysosomal proteolysis|inhibition of lysosomal protein catabolic process|downregulation of cellular protein catabolic process in lysosome|down regulation of cellular protein catabolic process in lysosome|negative regulation of lysosomal protein degradation|downregulation of cellular protein degradation in lysosome|down regulation of proteolysis within lysosome|negative regulation of lysosomal protein catabolism|downregulation of proteolysis within lysosome|inhibition of cellular protein breakdown in lysosome|down regulation of lysosomal proteolysis|down regulation of cellular protein catabolism in lysosome|downregulation of lysosomal proteolysis|inhibition of cellular protein catabolic process in lysosome|down regulation of lysosomal protein catabolism|downregulation of lysosomal protein catabolic process|down-regulation of cellular protein breakdown in lysosome|negative regulation of cellular protein degradation in lysosome|down-regulation of lysosomal proteolysis|down regulation of cellular protein degradation in lysosome|negative regulation of proteolysis within lysosome|downregulation of cellular protein catabolism in lysosome|down-regulation of lysosomal protein catabolic process|inhibition of cellular protein catabolism in lysosome|downregulation of lysosomal protein degradation|downregulation of cellular protein breakdown in lysosome|downregulation of lysosomal protein catabolism|down-regulation of lysosomal protein degradation|negative regulation of cellular protein catabolic process in lysosome|down regulation of cellular protein breakdown in lysosome|negative regulation of cellular protein breakdown in lysosome|down-regulation of cellular protein catabolism in lysosome|negative regulation of lysosomal proteolysis|inhibition of cellular protein degradation in lysosome|down regulation of lysosomal protein catabolic process|inhibition of lysosomal protein catabolism|inhibition of lysosomal protein degradation|inhibition of proteolysis within lysosome|down-regulation of proteolysis within lysosome|down-regulation of cellular protein catabolic process in lysosome|negative regulation of cellular protein catabolism in lysosome|down-regulation of lysosomal protein catabolism|down-regulation of cellular protein degradation in lysosome bf 2016-04-26T12:10:10Z biological_process owl:Class GO:0047221 biolink:NamedThing sn-glycerol-3-phosphate 2-alpha-galactosyltransferase activity Catalysis of the reaction: sn-glycerol 3-phosphate + UDP-D-galactose = 2-(alpha-D-galactosyl)-sn-glycerol 3-phosphate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl floridoside phosphate synthetase activity|floridoside-phosphate synthase activity|floridoside phosphate synthase activity|UDP-galactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase activity|UDP-galactose, sn-3-glycerol phosphate:1->2' galactosyltransferase activity|UDP-galactose:sn-glycerol-3-phosphate-2-D-galactosyl transferase activity|FPS|UDPgalactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase activity EC:2.4.1.137|RHEA:14285|KEGG_REACTION:R00853|MetaCyc:2.4.1.137-RXN molecular_function owl:Class GO:0043636 biolink:NamedThing bisphenol A catabolic process The chemical reactions and pathways resulting in the breakdown of bisphenol A, 4,4'-(propane-2,2-diyl)diphenol, a synthetic, aromatic organic compound used as a monomer in the manufacture of polycarbonate plastic and in the manufacture of epoxy resins. tmpzr1t_l9r_go_relaxed.owl bisphenol-A catabolism|bisphenol-A catabolic process biological_process owl:Class GO:0031511 biolink:NamedThing Mis6-Sim4 complex A protein complex that forms part of the inner kinetochore, which is involved in the loading of the centromeric histone h3 variant CENP-A onto centromeres and in centromere specific heterochromatin formation. The complex contains about 12 proteins, of which two are known as Mis6 and Sim4 in S. pombe and CENP-I and CENP-H in human. tmpzr1t_l9r_go_relaxed.owl Mis6 centromere subcomplex|Mis6-Mal2-Sim4 centromere complex|Sim4 complex cellular_component owl:Class GO:0033777 biolink:NamedThing lithocholate 6beta-hydroxylase activity Catalysis of the reaction: H(+) + lithocholate + NADPH + O(2) = 6-beta-hydroxylithocholate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl lithocholate,NADPH:oxygen oxidoreductase (6beta-hydroxylating) activity|6beta-hydroxylase activity|cytochrome P450 3A10/lithocholic acid 6beta-hydroxylase activity|CYP3A10|lithocholate 6beta-monooxygenase activity EC:1.14.14.138|MetaCyc:1.14.13.94-RXN|KEGG_REACTION:R07203|RHEA:18857 molecular_function owl:Class GO:1900991 biolink:NamedThing scopolamine biosynthetic process The chemical reactions and pathways resulting in the formation of scopolamine. tmpzr1t_l9r_go_relaxed.owl scopolamine formation|scopolamine synthesis|scopolamine anabolism|scopolamine biosynthesis yaf 2012-06-14T09:48:07Z biological_process owl:Class GO:1900989 biolink:NamedThing scopolamine metabolic process The chemical reactions and pathways involving scopolamine. tmpzr1t_l9r_go_relaxed.owl scopolamine metabolism yaf 2012-06-14T09:47:38Z biological_process owl:Class GO:0080057 biolink:NamedThing sepal vascular tissue pattern formation Vascular tissue pattern formation as it occurs in the sepal of vascular plants. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T02:26:19Z biological_process owl:Class GO:0061742 biolink:NamedThing chaperone-mediated autophagy translocation complex A lysosomal membrane protein complex that enables the translocation of a target protein across the lysosomal membrane as part of chaperone-mediated autophagy. tmpzr1t_l9r_go_relaxed.owl CMA translocation complex|CMA receptor complex|chaperone-mediated autophagy receptor complex https://github.com/geneontology/go-ontology/issues/20850 dph 2015-10-23T07:39:04Z cellular_component owl:Class GO:0072106 biolink:NamedThing regulation of ureteric bud formation Any process that modulates the developmental process pertaining to the initial formation of the ureteric bud from the Wolffian duct. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-12T02:34:40Z biological_process owl:Class GO:0007057 biolink:NamedThing spindle assembly involved in female meiosis I The aggregation, arrangement and bonding together of a set of components to form the spindle during meiosis I of a meiotic cell cycle in females. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl female meiosis I spindle assembly biological_process owl:Class GO:2000978 biolink:NamedThing negative regulation of forebrain neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of forebrain neuron differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-03T12:09:16Z biological_process owl:Class GO:0061185 biolink:NamedThing negative regulation of dermatome development Any process that decreases the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T08:43:08Z biological_process owl:Class GO:0047501 biolink:NamedThing (+)-neomenthol dehydrogenase activity Catalysis of the reaction: (+)-neomenthol + NADP(+) = (2S,5R)-menthone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl monoterpenoid dehydrogenase activity|(+)-neomenthol:NADP+ oxidoreductase activity MetaCyc:+-NEOMENTHOL-DEHYDROGENASE-RXN|KEGG_REACTION:R02548|EC:1.1.1.208|RHEA:23812 molecular_function owl:Class GO:0033754 biolink:NamedThing indoleamine 2,3-dioxygenase activity Catalysis of the reaction: tryptophan + O2 = N-formylkynurenine. The product of the reaction depends on the substrate; D-tryptophan produces N-formyl-D-kynurenine, and L-tryptophan produces N-formyl-L-kynurenine. tmpzr1t_l9r_go_relaxed.owl tryptophan pyrrolase activity|IDO|D-tryptophan:oxygen 2,3-oxidoreductase (decyclizing) activity EC:1.13.11.52|RHEA:14189|MetaCyc:RXN-8665|MetaCyc:RXN-8664 molecular_function owl:Class GO:0005316 biolink:NamedThing high-affinity inorganic phosphate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: HPO42-(out) + Na+(out) = HPO42-(in) + Na+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity inorganic phosphate:sodium symporter activity|sodium/phosphate cotransporter activity molecular_function owl:Class GO:0018895 biolink:NamedThing dibenzothiophene metabolic process The chemical reactions and pathways involving dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond. Dibenzothiophene derivatives can be detected in diesel oil following hydrodesulfurization treatment to remove sulfur compounds that would otherwise generate sulfur oxides during combustion. tmpzr1t_l9r_go_relaxed.owl diphenylene sulfide metabolic process|diphenylene sulfide metabolism|dibenzothiophene metabolism biological_process owl:Class GO:0032730 biolink:NamedThing positive regulation of interleukin-1 alpha production Any process that activates or increases the frequency, rate, or extent of interleukin-1 alpha production. tmpzr1t_l9r_go_relaxed.owl stimulation of interleukin-1 alpha production|up regulation of interleukin-1 alpha production|positive regulation of interleukin-1 alpha biosynthetic process|activation of interleukin-1 alpha production|positive regulation of IL-1 alpha production|up-regulation of interleukin-1 alpha production|positive regulation of interleukin-1 alpha secretion|upregulation of interleukin-1 alpha production GO:0050717|GO:0050726 biological_process owl:Class GO:0050152 biolink:NamedThing omega-amidase activity Catalysis of the reaction: a monoamide of a dicarboxylic acid + H2O = a dicarboxylate + NH3. tmpzr1t_l9r_go_relaxed.owl omega-amidodicarboxylate amidohydrolase activity|alpha-keto acid-omega-amidase activity|w-amidase activity MetaCyc:OMEGA-AMIDASE-RXN|RHEA:11716|EC:3.5.1.3 molecular_function owl:Class GO:0046001 biolink:NamedThing negative regulation of preblastoderm mitotic cell cycle Any process that stops, prevents or reduces the rate or extent of progression through the preblastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of preblastoderm mitotic cell cycle progression|inhibition of progression through preblastoderm mitotic cell cycle|downregulation of progression through preblastoderm mitotic cell cycle|down-regulation of progression through preblastoderm mitotic cell cycle|negative regulation of progression through preblastoderm mitotic cell cycle|down regulation of progression through preblastoderm mitotic cell cycle biological_process owl:Class GO:0010433 biolink:NamedThing bract morphogenesis The process in which the anatomical structure of a bract are generated and organized. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097402 biolink:NamedThing neuroblast migration The orderly movement of a neuroblast from one site to another, often during the development of a multicellular organism or multicellular structure. A neuroblast is any cell that will divide and give rise to a neuron. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-29T08:24:37Z biological_process owl:Class GO:0042955 biolink:NamedThing dextrin transport The directed movement of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902089 biolink:NamedThing cell wall polysaccharide catabolic process involved in lateral root development Any cell wall polysaccharide catabolic process that is involved in lateral root development. tmpzr1t_l9r_go_relaxed.owl cell wall polysaccharide breakdown involved in lateral root development tb 2013-04-26T18:34:53Z biological_process owl:Class GO:0103082 biolink:NamedThing 2-(4'-methylthio)butylmalate synthase activity Catalysis of the reaction: 2-oxo-6-methylthiohexanoate + acetyl-CoA + H2O <=> H+ + 2-(4'-methylthio)butylmalate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4166 molecular_function owl:Class GO:0004108 biolink:NamedThing citrate (Si)-synthase activity Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group. tmpzr1t_l9r_go_relaxed.owl condensing enzyme activity|citrate oxaloacetate-lyase ((pro-3S)-CH2COO-rightacetyl-CoA)|citrate oxaloacetate-lyase [(pro-3S)-CH2COOrightacetyl-CoA]|citric-condensing enzyme activity|citrate condensing enzyme activity|citrogenase activity|oxaloacetate transacetase activity|citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)->acetyl-CoA) activity|acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing, (pro-S)-carboxymethyl forming]|citrate synthase activity|citric synthase activity|(R)-citric synthase activity|citrate synthetase activity|citrate oxaloacetate-lyase, CoA-acetylating activity|oxalacetic transacetase activity EC:2.3.3.1|Reactome:R-HSA-70975|MetaCyc:CITSYN-RXN Note that this function was formerly EC:4.1.3.7. molecular_function owl:Class GO:0016828 biolink:NamedThing hydrolase activity, acting on acid sulfur-sulfur bonds Catalysis of the hydrolysis of any acid sulfur-sulfur bond. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid sulphur-sulphur bonds EC:3.12.-.- molecular_function owl:Class GO:1990787 biolink:NamedThing negative regulation of hh target transcription factor activity Any process that decreases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates members of the Gli protein family are activated by Hedgehog signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of hedgehog target transcription factor bhm 2015-06-26T09:54:29Z biological_process owl:Class GO:0072714 biolink:NamedThing response to selenite ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a selenite ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-19T02:46:28Z biological_process owl:Class GO:0014701 biolink:NamedThing junctional sarcoplasmic reticulum membrane The part of the sarcoplasmic reticulum membrane that contains calcium release channels, is devoted to calcium release and is juxtaposed to transverse tubule membrane. The junctional sarcoplasmic reticulum membrane consists of the junctional region of the terminal cisterna membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009202 biolink:NamedThing deoxyribonucleoside triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside triphosphate synthesis|deoxyribonucleoside triphosphate biosynthesis|deoxyribonucleoside triphosphate formation|deoxyribonucleoside triphosphate anabolism biological_process owl:Class GO:0009200 biolink:NamedThing deoxyribonucleoside triphosphate metabolic process The chemical reactions and pathways involving a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside triphosphate metabolism biological_process owl:Class GO:0018203 biolink:NamedThing peptidyl-isoleucine modification The modification of peptidyl-isoleucine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051192 biolink:NamedThing prosthetic group binding Binding to a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032166 biolink:NamedThing chlamydospore septin filament array Arrays of septin filaments, or bars, found in a series of filamentous structures. Observed in the chlamydospore membrane during chlamydospore formation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905210 biolink:NamedThing regulation of fibroblast chemotaxis Any process that modulates the frequency, rate or extent of fibroblast chemotaxis. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-02T20:08:42Z biological_process owl:Class GO:0070317 biolink:NamedThing negative regulation of G0 to G1 transition A cell cycle process that stops, prevents, or reduces the rate or extent of the transition from the G0 quiescent state to the G1 phase. tmpzr1t_l9r_go_relaxed.owl maintenance of G0 phase|maintenance of cell cycle quiescence|maintenance of cell quiescence|maintenance of G0 arrest biological_process owl:Class GO:0102820 biolink:NamedThing norbixin methyltransferase activity Catalysis of the reaction: norbixin + S-adenosyl-L-methionine <=> bixin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8238 molecular_function owl:Class GO:1903123 biolink:NamedThing regulation of thioredoxin peroxidase activity Any process that modulates the frequency, rate or extent of thioredoxin peroxidase activity. tmpzr1t_l9r_go_relaxed.owl regulation of thiol peroxidase activity|regulation of TPx activity|regulation of TrxPx activity bf 2014-06-18T11:03:11Z biological_process owl:Class GO:0061874 biolink:NamedThing positive regulation of hepatic stellate cell contraction Any process that activates or increases the frequency, rate or extent of hepatic stellate cell contraction. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:29:30Z biological_process owl:Class GO:0090459 biolink:NamedThing aspartate homeostasis Any process involved in the maintenance of an internal steady state of aspartate within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0030952 biolink:NamedThing establishment or maintenance of cytoskeleton polarity Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl cytoskeleton polarization biological_process owl:Class GO:0004460 biolink:NamedThing L-lactate dehydrogenase (cytochrome) activity Catalysis of the reaction: (S)-lactate + 2 [Fe(III)cytochrome c] = 2 [Fe(II)cytochrome c] + 2 H+ + pyruvate. tmpzr1t_l9r_go_relaxed.owl flavocytochrome b2|cytochrome b2 (flavin-free derivative of flavocytochrome b2)|lactic cytochrome c reductase activity|(S)-lactate:ferricytochrome-c 2-oxidoreductase activity|L-lactate cytochrome c reductase activity|lactic acid dehydrogenase activity|dehydrogenase, lactate (cytochrome)|L-lactate cytochrome c oxidoreductase activity|cytochrome b2|lactate dehydrogenase (cytochrome)|L-lactate ferricytochrome c oxidoreductase activity|L(+)-lactate:cytochrome c oxidoreductase activity MetaCyc:L-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN|EC:1.1.2.3|RHEA:19909 molecular_function owl:Class GO:0044078 biolink:NamedThing positive regulation by symbiont of host receptor-mediated endocytosis Any process in which a symbiont organism activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport, in its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of host receptor-mediated endocytosis by symbiont biological_process owl:Class GO:0044077 biolink:NamedThing modulation by symbiont of host receptor-mediated endocytosis The process in which a symbiont organism modulates the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport, in its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of host receptor-mediated endocytosis by symbiont|regulation by symbiont of host receptor-mediated endocytosis biological_process owl:Class GO:1900879 biolink:NamedThing (Z)-nonadeca-1,14-diene biosynthetic process The chemical reactions and pathways resulting in the formation of (Z)-nonadeca-1,14-diene. tmpzr1t_l9r_go_relaxed.owl (Z)-nonadeca-1,14-diene formation|(Z)-nonadeca-1,14-diene biosynthesis|(Z)-nonadeca-1,14-diene synthesis|(Z)-nonadeca-1,14-diene anabolism tt 2012-06-13T02:09:39Z biological_process owl:Class GO:0080085 biolink:NamedThing signal recognition particle, chloroplast targeting A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to the chloroplast. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T02:36:01Z cellular_component owl:Class GO:1900223 biolink:NamedThing positive regulation of amyloid-beta clearance Any process that activates or increases the frequency, rate or extent of amyloid-beta clearance. tmpzr1t_l9r_go_relaxed.owl up regulation of beta-amyloid clearance|activation of beta-amyloid clearance|up-regulation of beta-amyloid clearance|upregulation of beta-amyloid clearance|positive regulation of beta-amyloid clearance vk 2012-03-22T01:29:50Z biological_process owl:Class GO:1903950 biolink:NamedThing negative regulation of AV node cell action potential Any process that stops, prevents or reduces the frequency, rate or extent of AV node cell action potential. tmpzr1t_l9r_go_relaxed.owl down regulation of AV node cardiac muscle cell action potential|negative regulation of AV node cardiac muscle cell action potential|negative regulation of atrioventricular node cardiac muscle cell action potential|downregulation of atrioventricular node cardiac muscle cell action potential|down regulation of atrioventricular node cardiac muscle cell action potential|downregulation of AV node cell action potential|inhibition of AV node cell action potential|down regulation of AV node cell action potential|down-regulation of atrioventricular node cardiac muscle cell action potential|down-regulation of AV node cardiac muscle cell action potential|inhibition of atrioventricular node cardiac muscle cell action potential|down-regulation of AV node cell action potential|inhibition of AV node cardiac muscle cell action potential|downregulation of AV node cardiac muscle cell action potential nc 2015-02-20T14:59:41Z biological_process owl:Class GO:0044224 biolink:NamedThing juxtaparanode region of axon A region of an axon near a node of Ranvier that is between the paranode and internode regions. tmpzr1t_l9r_go_relaxed.owl juxtaparanode|juxtaparanodal region|juxta paranode axon NIF_Subcellular:sao758620702 jl 2009-11-13T12:57:36Z cellular_component owl:Class GO:0008401 biolink:NamedThing retinoic acid 4-hydroxylase activity Catalysis of the conversion of retinoic acid to 4-hydroxy-retinoic acid. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP261 Reactome:R-HSA-211874|Reactome:R-HSA-212007|Reactome:R-HSA-211923|Reactome:R-HSA-5602063|Reactome:R-HSA-5602050|Reactome:R-HSA-5362525 molecular_function owl:Class GO:0018903 biolink:NamedThing 1,3-dichloropropene metabolic process The chemical reactions and pathways involving members of the 1,3-dichloropropene family, which includes cis- and trans-1,3-dichloropropene. The 1,3-dichloropropenes are chlorinated hydrocarbons and the major active ingredients of commercial products for control of plant-parasitic nematodes. tmpzr1t_l9r_go_relaxed.owl gamma-chloroallylchloride metabolic process|gamma-chloroallylchloride metabolism|1,3-dichloropropene metabolism|1,3-dichloropropylene metabolic process|1,3-dichloropropylene metabolism UM-BBD_pathwayID:cpr biological_process owl:Class GO:0046628 biolink:NamedThing positive regulation of insulin receptor signaling pathway Any process that increases the frequency, rate or extent of insulin receptor signaling. tmpzr1t_l9r_go_relaxed.owl upregulation of insulin receptor signaling pathway|up-regulation of insulin receptor signaling pathway|activation of insulin receptor signaling pathway|positive regulation of insulin receptor signalling pathway|up regulation of insulin receptor signaling pathway|stimulation of insulin receptor signaling pathway biological_process owl:Class GO:0047148 biolink:NamedThing methylamine-glutamate N-methyltransferase activity Catalysis of the reaction: L-glutamate + methylammonium = N-methyl-L-glutamate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl methylamine:L-glutamate N-methyltransferase activity|N-methylglutamate synthase activity|methylamine-glutamate methyltransferase activity EC:2.1.1.21|KEGG_REACTION:R01586|RHEA:15837|MetaCyc:2.1.1.21-RXN molecular_function owl:Class GO:0070012 biolink:NamedThing oligopeptidase activity Catalysis of the hydrolysis of a peptide bond in an oligopeptide, i.e. a molecule containing a small number (2 to 20) of amino acid residues connected by peptide bonds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033871 biolink:NamedThing [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate; modifies selected glucosamine residues preceded by GlcA2S. tmpzr1t_l9r_go_relaxed.owl glucosaminyl 3-O-sulfotransferase 2 activity|3-OST-2|heparin-glucosamine 3-sulfotransferase 2 activity|3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity|glucosaminyl 3-O-sulfotransferase activity|heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 activity|isoform/isozyme 2 (3-OST-2, HS3ST2) MetaCyc:2.8.2.29-RXN|EC:2.8.2.29 molecular_function owl:Class GO:0098942 biolink:NamedThing retrograde trans-synaptic signaling by trans-synaptic protein complex Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by trans-synaptic protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990511 biolink:NamedThing piRNA biosynthetic process The chemical reactions and pathways resulting in the formation of piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. tmpzr1t_l9r_go_relaxed.owl Piwi-associated RNA biosynthetic process kmv 2014-10-07T13:47:32Z biological_process owl:Class GO:0004113 biolink:NamedThing 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. tmpzr1t_l9r_go_relaxed.owl 2',3'-cyclic nucleotide 3'-phosphohydrolase activity|2',3'-cyclic nucleotide 3'-phosphodiesterase activity|cyclic 2',3'-nucleotide 3'-phosphodiesterase activity|cyclic-CMP phosphodiesterase activity|nucleoside-2',3'-cyclic-phosphate 2'-nucleotidohydrolase activity|CNPase activity|2',3'-cyclic AMP phosphodiesterase activity|2',3'-cyclic nucleoside monophosphate phosphodiesterase|2':3'-cyclic nucleotide 3'-phosphodiesterase activity|cyclic 2',3'-nucleotide phosphodiesterase|2',3'-cyclic nucleotide phosphohydrolase|2':3'-CNMP-3'-ase activity MetaCyc:3.1.4.37-RXN|EC:3.1.4.37|RHEA:14489 molecular_function owl:Class GO:0019656 biolink:NamedThing glucose catabolic process to D-lactate and ethanol The anaerobic chemical reactions and pathways resulting in the enzymatic breakdown of D-glucose to D-lactate and ethanol, yielding energy in the form of adenosine triphosphate (ATP) at the rate of one ATP per glucose molecule. tmpzr1t_l9r_go_relaxed.owl heterolactate fermentation|heterofermentation|heterofermentative lactate fermentation|glucose fermentation to D-lactate and ethanol|heterofermentative pathway|heterolactic fermentation MetaCyc:P122-PWY biological_process owl:Class GO:0032001 biolink:NamedThing 1,4-alpha-glucan 6-alpha-glucosyltransferase activity Catalysis of the transfer an alpha-D-glucosyl residue in a (1->4)-alpha-D-glucan to the primary hydroxy group of glucose, free or combined in a (1->4)-alpha-D-glucan. tmpzr1t_l9r_go_relaxed.owl 1,4-alpha-D-glucan 6-alpha-D-glucosyltransferase activity|D-glucosyltransferase|oligoglucan-branching glycosyltransferase activity|1,4-alpha-D-glucan:1,4-alpha-D-glucan(D-glucose) 6-alpha-D-glucosyltransferase activity|T-enzyme EC:2.4.1.24|MetaCyc:2.4.1.24-RXN molecular_function owl:Class GO:0001111 biolink:NamedThing promoter clearance from RNA polymerase II promoter Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors. tmpzr1t_l9r_go_relaxed.owl promoter escape from RNA polymerase II promoter krc 2010-12-01T03:09:31Z biological_process owl:Class GO:2000261 biolink:NamedThing negative regulation of blood coagulation, common pathway Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation, common pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:42:44Z biological_process owl:Class GO:1905523 biolink:NamedThing positive regulation of macrophage migration Any process that activates or increases the frequency, rate or extent of macrophage migration. tmpzr1t_l9r_go_relaxed.owl activation of macrophage migration|up-regulation of macrophage migration|up regulation of macrophage migration|upregulation of macrophage migration sl 2016-10-03T15:29:21Z biological_process owl:Class GO:1904717 biolink:NamedThing regulation of AMPA glutamate receptor clustering Any process that modulates the frequency, rate or extent of AMPA glutamate receptor clustering. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|regulation of AMPA receptor clustering hjd 2015-10-07T19:32:11Z biological_process owl:Class GO:0098897 biolink:NamedThing spine apparatus membrane The lipid bilayer surrounding the spine apparatus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010031 biolink:NamedThing circumnutation The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019461 biolink:NamedThing glutamine catabolic process to fumarate, using glutamate synthase (NADPH) The chemical reactions and pathways resulting in the breakdown of glutamine into fumarate, beginning with the conversion of glutamine to glutamate catalyzed by the enzyme glutamate synthase (NADPH) (EC:1.4.1.13). tmpzr1t_l9r_go_relaxed.owl glutamate catabolic process to fumarate, using glutamate synthase (NADPH)|glutamine breakdown to fumarate, using glutamate synthase (NADPH)|glutamine degradation to fumarate, using glutamate synthase (NADPH) MetaCyc:GLUTAMINEFUM-PWY biological_process owl:Class GO:0031878 biolink:NamedThing type 1 somatostatin receptor binding Binding to a type 1 somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 somatostatin receptor ligand molecular_function owl:Class GO:0018377 biolink:NamedThing protein myristoylation The covalent attachment of a myristoyl group to a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid myristoylation GO:0018319 biological_process owl:Class GO:0046239 biolink:NamedThing phthalate catabolic process The chemical reactions and pathways resulting in the breakdown of phthalate, the anion of phthalic acid. tmpzr1t_l9r_go_relaxed.owl phthalate breakdown|phthalate catabolism|phthalate degradation biological_process owl:Class GO:0008234 biolink:NamedThing cysteine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl cysteine protease activity|thiol protease activity Reactome:R-HSA-2022381|Reactome:R-HSA-5660752|Reactome:R-HSA-2467809|Reactome:R-HSA-2467775 GO:0004220 molecular_function owl:Class GO:0010381 biolink:NamedThing peroxisome-chloroplast membrane tethering The attachment of a peroxisome to a chloroplast via molecular tethers that physically bridge their respective membranes and attach them to each other. The tethering may facilitate exchange of metabolites between the organelles. tmpzr1t_l9r_go_relaxed.owl attachment of peroxisome to chloroplast biological_process owl:Class GO:0004925 biolink:NamedThing prolactin receptor activity Combining with prolactin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903005 biolink:NamedThing negative regulation of protein K63-linked deubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein K63-linked deubiquitination. tmpzr1t_l9r_go_relaxed.owl down regulation of protein K63-linked deubiquitination|inhibition of protein K63-linked deubiquitination|down-regulation of protein K63-linked deubiquitination|downregulation of protein K63-linked deubiquitination bf 2014-05-12T15:40:49Z biological_process owl:Class GO:0036461 biolink:NamedThing BLOC-2 complex binding Binding to a BLOC-2 complex, a protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules. tmpzr1t_l9r_go_relaxed.owl bf 2014-06-11T09:14:55Z molecular_function owl:Class GO:0090716 biolink:NamedThing adaptive immune memory response An immune response directed against a previously encountered antigen, being quicker and quantitatively better compared with the primary response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:32:42Z biological_process owl:Class GO:0003993 biolink:NamedThing acid phosphatase activity Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. tmpzr1t_l9r_go_relaxed.owl acid nucleoside diphosphate phosphatase activity|uteroferrin|orthophosphoric-monoester phosphohydrolase (acid optimum)|acid phosphomonoester hydrolase activity|acid phosphomonoesterase activity|phosphate-monoester phosphohydrolase (acid optimum)|glycerophosphatase activity|phosphomonoesterase activity|acid phosphohydrolase activity|acid monophosphatase activity Reactome:R-HSA-196950|MetaCyc:ACID-PHOSPHATASE-RXN|EC:3.1.3.2 molecular_function owl:Class GO:0043580 biolink:NamedThing periplasmic space organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the periplasmic space, the region between the inner (cytoplasmic) and outer membrane in Gram-negative bacteria, or the inner membrane and cell wall in fungi. tmpzr1t_l9r_go_relaxed.owl periplasmic space organisation|periplasmic space organization and biogenesis biological_process owl:Class GO:0033472 biolink:NamedThing GDP-L-galactose biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-L-galactose, a substance composed of L-galactose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-L-galactose anabolism|GDP-L-galactose formation|GDP-L-galactose synthesis|GDP-L-galactose biosynthesis MetaCyc:PWY-5115 biological_process owl:Class GO:2000223 biolink:NamedThing regulation of BMP signaling pathway involved in heart jogging Any process that modulates the frequency, rate or extent of BMP signaling pathway involved in heart jogging. tmpzr1t_l9r_go_relaxed.owl regulation of BMP signalling pathway involved in heart jogging pathway involved in somitogenesis vk 2010-11-04T02:44:01Z biological_process owl:Class GO:0000085 biolink:NamedThing mitotic G2 phase The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by mitosis. tmpzr1t_l9r_go_relaxed.owl G2 phase of mitotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0002592 biolink:NamedThing regulation of antigen processing and presentation via MHC class Ib Any process that modulates the frequency, rate, or extent of antigen processing and presentation of antigen via MHC class Ib. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005680 biolink:NamedThing anaphase-promoting complex A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B. tmpzr1t_l9r_go_relaxed.owl APC|cyclosome|anaphase promoting complex Wikipedia:Anaphase-promoting_complex Note that the synonym 'APC' should not be confused with the abbreviation for the adenomatous polyposis coli gene and protein. cellular_component owl:Class GO:0031783 biolink:NamedThing type 5 melanocortin receptor binding Binding to a type 5 melanocortin receptor. tmpzr1t_l9r_go_relaxed.owl type 5 melanocortin receptor ligand molecular_function owl:Class GO:0050291 biolink:NamedThing sphingosine N-acyltransferase activity Catalysis of the reaction: acyl-CoA + sphingosine = CoA + N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl sphingosine acyltransferase activity|dihydroceramide synthase activity|ceramide synthetase activity|acyl-CoA:sphingosine N-acyltransferase activity|ceramide synthase activity Reactome:R-HSA-428185|RHEA:23768|EC:2.3.1.24|MetaCyc:SPHINGOSINE-N-ACYLTRANSFERASE-RXN molecular_function owl:Class GO:1902356 biolink:NamedThing oxaloacetate(2-) transmembrane transport The directed movement of oxaloacetate(2-) across a membrane. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-14T14:40:37Z biological_process owl:Class GO:0017103 biolink:NamedThing UTP:galactose-1-phosphate uridylyltransferase activity Catalysis of the reaction: alpha-D-galactose 1-phosphate + UTP = diphosphate + UDP-D-galactose. tmpzr1t_l9r_go_relaxed.owl UTP:hexose-1-phosphate uridylyltransferase activity|uridine diphosphate galactose pyrophosphorylase activity|UTP-hexose-1-phosphate uridylyltransferase activity|galactose 1-phosphate uridylyltransferase activity|galactose 1-phosphate uridyltransferase activity|UDPgalactose pyrophosphorylase activity|UTP:alpha-D-hexose-1-phosphate uridylyltransferase activity|Gal-1-P uridylyltransferase activity|uridine diphosphogalactose pyrophosphorylase activity|alpha-D-galactose 1-phosphate uridylyltransferase activity|galactose-1-phosphate uridylyltransferase activity MetaCyc:UTPHEXPURIDYLYLTRANS-RXN|RHEA:14209|EC:2.7.7.10|KEGG_REACTION:R00502 GO:0003982 molecular_function owl:Class GO:0102247 biolink:NamedThing malonyl-malonyl acyl carrier protein-condensing enzyme activity Catalysis of the reaction: 2 H+ + 2 a malonyl-[acp] <=> 2 carbon dioxide + an acetoacetyl-[acp] + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12361 molecular_function owl:Class GO:0009194 biolink:NamedThing pyrimidine ribonucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine ribonucleoside diphosphate formation|pyrimidine ribonucleoside diphosphate synthesis|pyrimidine ribonucleoside diphosphate biosynthesis|pyrimidine ribonucleoside diphosphate anabolism biological_process owl:Class GO:0047087 biolink:NamedThing protopine 6-monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + protopine = 6-hydroxyprotopine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl protopine 6-hydroxylase activity|protopine,NADPH:oxygen oxidoreductase (6-hydroxylating) EC:1.14.14.98|MetaCyc:1.14.13.55-RXN|RHEA:22644|KEGG_REACTION:R04699 molecular_function owl:Class GO:0046205 biolink:NamedThing nor-spermidine catabolic process The chemical reactions and pathways resulting in the breakdown of nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane. tmpzr1t_l9r_go_relaxed.owl nor-spermidine breakdown|nor-spermidine catabolism|nor-spermidine degradation biological_process owl:Class GO:0005483 biolink:NamedThing soluble NSF attachment protein activity Binding to both N-ethylmaleimide-sensitive fusion protein (NSF) and a cis-SNARE complex (i.e. a SNARE complex in which all proteins are associated with the same membrane) and increasing the ATPase activity of NSF, thereby allowing ATP hydrolysis by NSF to disassemble the cis-SNARE complex. tmpzr1t_l9r_go_relaxed.owl SNAP https://github.com/geneontology/go-ontology/issues/16807 molecular_function owl:Class GO:0102645 biolink:NamedThing 17(E)-cheilanthenediol synthase activity Catalysis of the reaction: 17(E)-cheilanthenediol <=> all-trans-geranylfarnesol + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15758 molecular_function owl:Class GO:0060962 biolink:NamedThing regulation of ribosomal protein gene transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl regulation of ribosomal protein gene transcription from RNA polymerase II promoter dph 2009-10-05T03:00:40Z biological_process owl:Class GO:0140656 biolink:NamedThing endodeoxyribonuclease activator activity Binds to and increases the activity of an endodeoxyribonuclease. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21574 pg 2021-06-10T13:31:54Z molecular_function owl:Class GO:1904867 biolink:NamedThing protein localization to Cajal body A process in which a protein is transported to, or maintained in, a location within a Cajal body. tmpzr1t_l9r_go_relaxed.owl protein localisation to Cajal body|protein localisation in Cajal body|protein localization in Cajal body tb 2015-12-17T21:48:18Z biological_process owl:Class GO:1903405 biolink:NamedThing protein localization to nuclear body A process in which a protein is transported to, or maintained in, a location within a nuclear body. tmpzr1t_l9r_go_relaxed.owl protein localization in nuclear body|protein localisation to nuclear body|protein localisation in nuclear body mah 2014-09-01T13:57:11Z biological_process owl:Class GO:0009759 biolink:NamedThing indole glucosinolate biosynthetic process The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. tmpzr1t_l9r_go_relaxed.owl indole glucosinolate biosynthesis|indole glucosinolate anabolism|indole glucosinolate synthesis|indole glucosinolate formation biological_process owl:Class GO:0140238 biolink:NamedThing presynaptic endocytosis A vesicle-mediated transport process in which the presynapse take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/230 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T07:33:55Z biological_process owl:Class GO:0042340 biolink:NamedThing keratan sulfate catabolic process The chemical reactions and pathways resulting in the breakdown of keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues. tmpzr1t_l9r_go_relaxed.owl keratan sulfate catabolism|keratan sulphate catabolism|keratan sulfate degradation|keratan sulfate breakdown|keratan sulphate catabolic process biological_process owl:Class GO:0043749 biolink:NamedThing phenol, water dikinase activity Catalysis of the reaction: phenol + MgATP + H2O = phenylphosphate + MgAMP + orthophosphate. tmpzr1t_l9r_go_relaxed.owl ATP:phenol:water phosphotransferase activity|phenol:water dikinase activity|phenylphosphate synthase activity EC:2.7.9.- molecular_function owl:Class GO:0018103 biolink:NamedThing protein C-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via a C atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid C-linked glycosylation RESID:AA0217 biological_process owl:Class GO:0060165 biolink:NamedThing regulation of timing of subpallium neuron differentiation The process controlling the timing and/or rate at which a relatively unspecialized cell in the subpallium acquires features of a neuron. The subpallium is the base region of the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060164 biolink:NamedThing regulation of timing of neuron differentiation The process controlling the activation and/or rate at which a relatively unspecialized cell acquires features of a neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031873 biolink:NamedThing type 2 proteinase activated receptor binding Binding to a type 2 proteinase activated receptor. tmpzr1t_l9r_go_relaxed.owl type 2 proteinase activated receptor ligand molecular_function owl:Class GO:1900638 biolink:NamedThing negative regulation of asperfuranone biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of asperfuranone biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of asperfuranone anabolism|down regulation of asperfuranone anabolism|negative regulation of asperfuranone formation|down regulation of asperfuranone formation|down-regulation of asperfuranone biosynthesis|inhibition of asperfuranone anabolism|downregulation of asperfuranone synthesis|down-regulation of asperfuranone synthesis|downregulation of asperfuranone anabolism|down-regulation of asperfuranone formation|down-regulation of asperfuranone biosynthetic process|negative regulation of asperfuranone synthesis|negative regulation of asperfuranone anabolism|negative regulation of asperfuranone biosynthesis|down regulation of asperfuranone biosynthesis|inhibition of asperfuranone biosynthetic process|down regulation of asperfuranone synthesis|inhibition of asperfuranone synthesis|inhibition of asperfuranone formation|inhibition of asperfuranone biosynthesis|downregulation of asperfuranone biosynthesis|down regulation of asperfuranone biosynthetic process|downregulation of asperfuranone biosynthetic process|downregulation of asperfuranone formation di 2012-05-22T03:50:16Z biological_process owl:Class GO:0097570 biolink:NamedThing cyst wall The specialized envelope lying outside the cell membrane of a cyst. A cyst is a resting or dormant stage of a microorganism, usually a bacterium or a protist or rarely an invertebrate animal, that helps the organism to survive in unfavorable environmental conditions. In protists such as protozoan parasites alternating cystic- and non-cystic stages, the cyst wall is usually composed of carbohydrates and proteins. tmpzr1t_l9r_go_relaxed.owl pr 2014-02-18T10:25:53Z cellular_component owl:Class GO:0002590 biolink:NamedThing negative regulation of antigen processing and presentation of peptide antigen via MHC class I Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl down-regulation of antigen processing and presentation of peptide antigen via MHC class I|down regulation of antigen processing and presentation of peptide antigen via MHC class I|negative regulation of peptide antigen processing and presentation via MHC class I|downregulation of antigen processing and presentation of peptide antigen via MHC class I|inhibition of antigen processing and presentation of peptide antigen via MHC class I biological_process owl:Class GO:1905214 biolink:NamedThing regulation of RNA binding Any process that modulates the frequency, rate or extent of RNA binding. tmpzr1t_l9r_go_relaxed.owl bf 2016-06-06T10:20:56Z biological_process owl:Class GO:0008112 biolink:NamedThing nicotinamide N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + nicotinamide = 1-methylnicotinamide + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:nicotinamide N-methyltransferase activity|nicotinamide methyltransferase activity MetaCyc:NICOTINAMIDE-N-METHYLTRANSFERASE-RXN|RHEA:23884|Reactome:R-HSA-5359451|KEGG_REACTION:R01269|EC:2.1.1.1 molecular_function owl:Class GO:0019956 biolink:NamedThing chemokine binding Binding to a chemokine. Chemokines are a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070797 biolink:NamedThing negative regulation of cleistothecium development Any process that stops, prevents, or reduces the frequency, rate or extent of cleistothecium development, a process that leads to the formation of a cleistothecium. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:36:12Z biological_process owl:Class GO:1902442 biolink:NamedThing regulation of ripoptosome assembly involved in necroptotic process Any process that modulates the frequency, rate or extent of ripoptosome assembly involved in a necroptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of ripoptosome assembly involved in necroptosis dph 2013-10-10T17:51:33Z biological_process owl:Class GO:0002157 biolink:NamedThing positive regulation of thyroid hormone mediated signaling pathway Any process that increases the frequency, rate or extent of thyroid hormone mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of thyroid hormone mediated signalling pathway hjd 2009-11-19T12:42:57Z biological_process owl:Class GO:0034771 biolink:NamedThing histone H4-K20 monomethylation The modification of histone H4 by addition of one methyl group to lysine at position 20 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H4 K20 monomethylation|histone H4 K20 monomethylation biological_process owl:Class GO:0018026 biolink:NamedThing peptidyl-lysine monomethylation The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0076 biological_process owl:Class GO:0043652 biolink:NamedThing engulfment of apoptotic cell The removal of the apoptotic cell by phagocytosis, by a neighboring cell or by a phagocyte. tmpzr1t_l9r_go_relaxed.owl engulfment of apoptotic cell corpse|engulfment of cell corpse This term should be used to annotate gene products from the engulfing cell that facilitate phagocytosis of apoptotic cells. It should not be mistaken with GO:0070782 'phosphatidylserine exposure on apoptotic cell surface', a process occurring in apoptotic cells that acts as a signal for engulfing cells. If gene products involved in such instances of phosphatidylserine exposure are shown to have a positive effect on engulfment, they may be annotated to GO:1901076 'positive regulation of engulfment of apoptotic cell'. biological_process owl:Class GO:0043892 biolink:NamedThing methylglyoxal reductase (NADPH-dependent) activity Catalysis of the reaction: lactaldehyde + NADP+ = methylglyoxal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl lactaldehyde:NADP+ oxidoreductase activity|lactaldehyde dehydrogenase (NADP+)|Gre2 MetaCyc:RXN-8636|EC:1.1.1.283|RHEA:21748|MetaCyc:1.1.1.283-RXN molecular_function owl:Class GO:1904598 biolink:NamedThing positive regulation of connective tissue replacement involved in inflammatory response wound healing Any process that activates or increases the frequency, rate or extent of connective tissue replacement involved in inflammatory response wound healing. tmpzr1t_l9r_go_relaxed.owl up-regulation of fibrosis during inflammatory response|activation of fibrosis during inflammatory response|upregulation of connective tissue replacement during inflammatory response|positive regulation of connective tissue replacement during inflammatory response|up-regulation of connective tissue replacement during inflammatory response|up regulation of connective tissue replacement during inflammatory response|up regulation of fibrosis during inflammatory response|positive regulation of fibrosis during inflammatory response|activation of connective tissue replacement during inflammatory response|up regulation of connective tissue replacement involved in inflammatory response wound healing|upregulation of connective tissue replacement involved in inflammatory response wound healing|up-regulation of connective tissue replacement involved in inflammatory response wound healing|upregulation of fibrosis during inflammatory response|activation of connective tissue replacement involved in inflammatory response wound healing krc 2015-08-25T20:52:36Z biological_process owl:Class GO:0032600 biolink:NamedThing chemokine receptor transport out of membrane raft The directed movement of a chemokine receptor out of a membrane raft. tmpzr1t_l9r_go_relaxed.owl chemokine receptor transport out of lipid raft|chemokine receptor translocation out of membrane raft biological_process owl:Class GO:0032599 biolink:NamedThing protein transport out of membrane raft The directed movement of a protein out of a membrane raft. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. tmpzr1t_l9r_go_relaxed.owl protein transport out of lipid raft|receptor translocation out of membrane raft|protein translocation out of membrane raft|receptor transport out of membrane raft biological_process owl:Class GO:0043889 biolink:NamedThing (S)-3-O-geranylgeranylglyceryl phosphate synthase activity Catalysis of the alkylation of the primary hydroxyl group in (S)-glyceryl phosphate by geranylgeranyl diphosphate to form (S)-3-O-geranylgeranylglyceryl phosphate. tmpzr1t_l9r_go_relaxed.owl (S)-GGGP synthase activity|GGGP synthase activity|(S)-3-O-geranylgeranylglycerylphosphate synthase activity|GGGPS This function is involved in archaeal lipid synthesis. molecular_function owl:Class GO:0035703 biolink:NamedThing monocyte migration into blood stream The movement of a monocyte from the bone marrow to the blood stream. tmpzr1t_l9r_go_relaxed.owl release of monocytes into circulation bf 2011-03-02T11:37:54Z biological_process owl:Class GO:0016188 biolink:NamedThing synaptic vesicle maturation Steps required to form an initiated synaptic vesicle into a fully formed and transmissible synaptic vesicle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905598 biolink:NamedThing negative regulation of low-density lipoprotein receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of low-density lipoprotein receptor activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of LDL receptor|down regulation of LDLR activity|downregulation of low-density lipoprotein receptor activity|down-regulation of low-density lipoprotein receptor activity|down regulation of LDL receptor|inhibition of low-density lipoprotein receptor activity|down-regulation of LDLR activity|negative regulation of LDLR activity|inhibition of LDLR activity|down-regulation of LDL receptor|down regulation of low-density lipoprotein receptor activity|downregulation of LDL receptor|inhibition of LDL receptor|downregulation of LDLR activity nc 2016-10-26T11:53:34Z biological_process owl:Class GO:0031723 biolink:NamedThing CXCR4 chemokine receptor binding Binding to a CXCR4 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CXCR4 chemokine receptor ligand|stromal cell-derived factor 1 receptor binding molecular_function owl:Class GO:0070931 biolink:NamedThing Golgi-associated vesicle lumen The volume enclosed by the membrane of a Golgi-associated vesicle. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-16T04:26:50Z cellular_component owl:Class GO:0061566 biolink:NamedThing CMP phosphorylation The process of introducing a phosphate group into CMP, cytidine monophosphate, to produce CDP. Addition of two phosphate groups produces CTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T12:52:39Z biological_process owl:Class GO:1902430 biolink:NamedThing negative regulation of amyloid-beta formation Any process that stops, prevents or reduces the frequency, rate or extent of amyloid-beta formation. tmpzr1t_l9r_go_relaxed.owl downregulation of beta-amyloid formation|negative regulation of beta-amyloid formation|down regulation of beta-amyloid formation|down-regulation of beta-amyloid formation|inhibition of beta-amyloid formation hjd 2013-09-25T17:41:01Z biological_process owl:Class GO:0034994 biolink:NamedThing microtubule organizing center attachment site organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center attachment site. A microtubule organizing center attachment site is a region of the nuclear envelope to which a microtubule organizing center (MTOC) attaches. tmpzr1t_l9r_go_relaxed.owl microtubule organising centre attachment site organisation|MAS organization|MTOC attachment site organization biological_process owl:Class GO:0047235 biolink:NamedThing sucrose 6F-alpha-galactotransferase activity Catalysis of the reaction: sucrose + UDP-galactose = 6F-alpha-D-galactosylsucrose + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphogalactose-sucrose 6F-alpha-galactosyltransferase activity|UDPgalactose:sucrose 6fru-alpha-galactosyltransferase activity|UDP-galactose:sucrose 6F-alpha-D-galactosyltransferase activity|sucrose 6(F)-alpha-galactosyltransferase activity|sucrose 6F-alpha-galactosyltransferase activity|UDPgalactose:sucrose 6F-alpha-D-galactosyltransferase activity MetaCyc:2.4.1.167-RXN|RHEA:10088|EC:2.4.1.167 molecular_function owl:Class GO:0005995 biolink:NamedThing melibiose catabolic process The chemical reactions and pathways resulting in the breakdown of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose. tmpzr1t_l9r_go_relaxed.owl melibiose catabolism|melibiose breakdown|melibiose degradation biological_process owl:Class GO:0140612 biolink:NamedThing DNA damage sensor activity A molecule that recognises toxic DNA structures, for example, double-strand breaks or collapsed replication forks, and initiates a signalling response. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19051 pg 2021-03-03T18:11:17Z molecular_function owl:Class GO:0005138 biolink:NamedThing interleukin-6 receptor binding Binding to an interleukin-6 receptor. tmpzr1t_l9r_go_relaxed.owl IL-6|interleukin-6 receptor ligand molecular_function owl:Class GO:0150168 biolink:NamedThing negative regulation of histone H3-K4 acetylation Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K4 acetylation. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:34:01Z biological_process owl:Class GO:0030320 biolink:NamedThing cellular monovalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of monovalent inorganic anions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030002 biolink:NamedThing cellular anion homeostasis Any process involved in the maintenance of an internal steady state of anions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048648 biolink:NamedThing caste determination The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental and/or genetic cues. Individuals with distinct developmental fates perform different functions in a colony of social insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102145 biolink:NamedThing (3R)-(E)-nerolidol synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + H2O <=> (3R,6E)-nerolidol + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:27534|MetaCyc:RXN-11575|EC:4.2.3.49 molecular_function owl:Class GO:0032124 biolink:NamedThing macronucleus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the macronucleus. tmpzr1t_l9r_go_relaxed.owl macronuclear organization and biogenesis|macronuclear organization|macronucleus organisation biological_process owl:Class GO:0039629 biolink:NamedThing T=219 icosahedral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=219 symmetry. T=219 icosahedral capsid is composed of 12 pentameric and 2180 hexameric capsomeres for a total of 13140 capsid proteins. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-03T16:29:00Z cellular_component owl:Class GO:0000227 biolink:NamedThing oxaloacetate secondary active transmembrane transporter activity Enables the transfer of oxaloacetate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl oxaloacetate carrier activity molecular_function owl:Class GO:1900857 biolink:NamedThing positive regulation of fumitremorgin B biosynthetic process Any process that activates or increases the frequency, rate or extent of fumitremorgin B biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of fumitremorgin B biosynthetic process|up-regulation of fumitremorgin B biosynthetic process|up regulation of fumitremorgin B biosynthetic process di 2012-06-07T09:51:09Z biological_process owl:Class GO:1905516 biolink:NamedThing positive regulation of fertilization Any process that activates or increases the frequency, rate or extent of fertilization. tmpzr1t_l9r_go_relaxed.owl upregulation of syngamy|upregulation of fertilization|activation of syngamy|up regulation of fertilization|up regulation of syngamy|activation of fertilization|up-regulation of syngamy|positive regulation of syngamy|up-regulation of fertilization pr 2016-09-30T14:32:32Z biological_process owl:Class GO:0080025 biolink:NamedThing phosphatidylinositol-3,5-bisphosphate binding Binding to phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions. tmpzr1t_l9r_go_relaxed.owl PtdIns(3,5)P2 binding molecular_function owl:Class GO:0047558 biolink:NamedThing 3-cyanoalanine hydratase activity Catalysis of the reaction: L-asparagine = 3-cyano-L-alanine + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl L-asparagine hydro-lyase (3-cyanoalanine-forming)|beta-CNAla hydrolase activity|L-asparagine hydro-lyase activity|beta-cyanoalanine hydratase activity|beta-cyanoalanine hydrolase activity|beta-CNA nitrilase activity RHEA:15385|KEGG_REACTION:R01267|MetaCyc:3-CYANOALANINE-HYDRATASE-RXN|EC:4.2.1.65 molecular_function owl:Class GO:0061772 biolink:NamedThing xenobiotic transport across blood-nerve barrier The directed movement of a xenobiotic through the blood-nerve barrier. tmpzr1t_l9r_go_relaxed.owl drug transport across blood-nerve barrier|drug transport across perineurial barrier dph 2016-07-09T09:59:59Z biological_process owl:Class GO:0043027 biolink:NamedThing cysteine-type endopeptidase inhibitor activity involved in apoptotic process Binds to and stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process. tmpzr1t_l9r_go_relaxed.owl caspase inhibitor activity molecular_function owl:Class GO:0019168 biolink:NamedThing 2-octaprenylphenol hydroxylase activity Catalysis of the reaction: 2-octaprenylphenol + NADPH + O2 + H+ = 2-octaprenyl-6-hydroxyphenol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2-OCTAPRENYLPHENOL-HYDROX-RXN|RHEA:27790 molecular_function owl:Class GO:0002372 biolink:NamedThing myeloid dendritic cell cytokine production Any process that contributes to cytokine production by a myeloid dendritic cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0008193 biolink:NamedThing tRNA guanylyltransferase activity Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of a tRNA molecule; observed for His tRNAs. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.79|RHEA:54564 molecular_function owl:Class GO:0008192 biolink:NamedThing RNA guanylyltransferase activity Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120011 biolink:NamedThing intermembrane sterol transfer The transport of sterols between membranes in which a sterol molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-16T22:15:40Z biological_process owl:Class GO:0043279 biolink:NamedThing response to alkaloid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000191 biolink:NamedThing regulation of fatty acid transport Any process that modulates the frequency, rate or extent of fatty acid transport. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-18T10:37:13Z biological_process owl:Class GO:0005052 biolink:NamedThing peroxisome matrix targeting signal-1 binding Binding to a type 1 peroxisome targeting signal, a tripeptide with the consensus sequence (S/A/C)-(K/R/H)-L. tmpzr1t_l9r_go_relaxed.owl PTS1 binding|peroxisome targeting signal-1 receptor|peroxisome targeting signal-1 binding|peroxisomal targeting signal 1 (PTS1) binding|PTS1 receptor|PEX5 molecular_function owl:Class GO:0000268 biolink:NamedThing peroxisome targeting sequence binding Binding to a peroxisomal targeting sequence, a sequence of amino acids within a protein that acts as a signal for the localization of a protein into the peroxisome. tmpzr1t_l9r_go_relaxed.owl PTS receptor|peroxisome targeting signal receptor|PTS binding GO:0005051 molecular_function owl:Class GO:0050835 biolink:NamedThing iron incorporation into iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0356 biological_process owl:Class GO:0033932 biolink:NamedThing 1,3-alpha-L-fucosidase activity Catalysis of the hydrolysis of (1->3) linkages between alpha-L-fucose and N-acetylglucosamine residues in glycoproteins. tmpzr1t_l9r_go_relaxed.owl almond emulsin fucosidase I activity|3-alpha-L-fucosyl-N-acetylglucosaminyl-glycoprotein fucohydrolase activity MetaCyc:3.2.1.111-RXN|EC:3.2.1.111 molecular_function owl:Class GO:0004560 biolink:NamedThing alpha-L-fucosidase activity Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose. tmpzr1t_l9r_go_relaxed.owl alpha-L-fucoside fucohydrolase activity|alpha-fucosidase activity RHEA:12288|EC:3.2.1.51|MetaCyc:ALPHA-L-FUCOSIDASE-RXN|Reactome:R-HSA-5693807 molecular_function owl:Class GO:0018479 biolink:NamedThing benzaldehyde dehydrogenase (NAD+) activity Catalysis of the reaction: benzaldehyde + NAD+ + H2O = benzoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl benzaldehyde (NAD) dehydrogenase activity|benzaldehyde:NAD+ oxidoreductase activity UM-BBD_reactionID:r0269|MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN|RHEA:11840|EC:1.2.1.28 molecular_function owl:Class GO:0034126 biolink:NamedThing positive regulation of MyD88-dependent toll-like receptor signaling pathway Any process that activates or increases the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of MyD88-dependent toll-like receptor signalling pathway|positive regulation of MyD88-dependent TLR signaling pathway biological_process owl:Class GO:1990194 biolink:NamedThing cytoplasmic U snRNP body assembly The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic U snRNP body. tmpzr1t_l9r_go_relaxed.owl U body assembly tb 2013-09-12T21:54:20Z biological_process owl:Class GO:0044740 biolink:NamedThing negative regulation of sensory perception of pain in other organism A process that negatively regulates the sensory perception of pain in a different organism. tmpzr1t_l9r_go_relaxed.owl inhibition of sensory perception of pain in another organism jl 2012-11-07T13:43:10Z biological_process owl:Class GO:0044465 biolink:NamedThing modulation of sensory perception of pain in other organism A process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal, in a different organism. tmpzr1t_l9r_go_relaxed.owl regulation of sensory perception of pain in another organism jl 2012-01-12T03:14:19Z biological_process owl:Class GO:0080042 biolink:NamedThing ADP-glucose pyrophosphohydrolase activity Catalysis of the reaction: ADP-glucose + H2O = AMP + glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033772 biolink:NamedThing flavonoid 3',5'-hydroxylase activity Catalysis of the reactions: a flavanone + NADPH + H+ + O2 = a 3'-hydroxyflavanone + NADP+ + H2O, and a 3'-hydroxyflavanone + NADPH + H+ + O2 = a 3',5'-dihydroxyflavanone + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl F3'5'H|F3',5'H|flavanone,NADPH:oxygen oxidoreductase activity MetaCyc:RXN-8671|EC:1.14.14.81|MetaCyc:RXN-7783|RHEA:55448 molecular_function owl:Class GO:1905504 biolink:NamedThing negative regulation of motile cilium assembly Any process that stops, prevents or reduces the frequency, rate or extent of motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of motile primary cilia assembly|down-regulation of nodal cilium formation|negative regulation of motile primary cilium assembly|negative regulation of motile primary cilia formation|downregulation of nodal cilium formation|down regulation of motile primary cilium assembly|down-regulation of motile primary cilium formation|downregulation of motile primary cilium assembly|inhibition of nodal cilium formation|downregulation of motile primary cilia assembly|negative regulation of motile primary cilia assembly|down regulation of motile primary cilia formation|negative regulation of nodal cilium assembly|down regulation of nodal cilium formation|down-regulation of nodal cilium assembly|inhibition of motile primary cilium formation|downregulation of nodal cilium assembly|inhibition of motile primary cilia formation|inhibition of motile primary cilia assembly|downregulation of motile primary cilia formation|down regulation of nodal cilium assembly|down regulation of motile primary cilia assembly|inhibition of nodal cilium assembly|down regulation of motile primary cilium formation|down-regulation of motile primary cilium assembly|inhibition of motile primary cilium assembly|downregulation of motile primary cilium formation|negative regulation of motile primary cilium formation|down-regulation of motile primary cilia formation|negative regulation of nodal cilium formation krc 2016-09-27T18:27:55Z biological_process owl:Class GO:0021677 biolink:NamedThing rhombomere 8 formation The process that gives rise to rhombomere 8. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070347 biolink:NamedThing regulation of brown fat cell proliferation Any process that modulates the frequency, rate or extent of brown fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of brown adipose cell proliferation|regulation of brown adipocyte proliferation biological_process owl:Class GO:0070344 biolink:NamedThing regulation of fat cell proliferation Any process that modulates the frequency, rate or extent of fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of adipocyte proliferation|regulation of adipose cell proliferation biological_process owl:Class GO:0021633 biolink:NamedThing optic nerve structural organization The process that contributes to the act of creating the structural organization of the optic nerve. This process pertains to the physical shaping of a rudimentary structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain. tmpzr1t_l9r_go_relaxed.owl CN II structural organization|optic nerve structural organisation biological_process owl:Class GO:0006244 biolink:NamedThing pyrimidine nucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleotide catabolism|pyrimidine nucleotide degradation|pyrimidine nucleotide breakdown biological_process owl:Class GO:0048396 biolink:NamedThing negative regulation of intermediate mesodermal cell fate determination Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl inhibition of intermediate mesodermal cell fate determination|down regulation of intermediate mesodermal cell fate determination|downregulation of intermediate mesodermal cell fate determination|down-regulation of intermediate mesodermal cell fate determination biological_process owl:Class GO:1990935 biolink:NamedThing splicing factor binding Binding to a protein involved in the process of removing sections of the primary RNA transcript to form the mature form of the RNA. tmpzr1t_l9r_go_relaxed.owl sl 2016-03-21T21:57:20Z molecular_function owl:Class GO:1903451 biolink:NamedThing negative regulation of G1 to G0 transition Any process that stops, prevents or reduces the frequency, rate or extent of G1 to G0 transition. tmpzr1t_l9r_go_relaxed.owl inhibition of G1 to G0 transition|down-regulation of establishment of cell quiescence|downregulation of G1/G0 transition|down regulation of stationary phase|downregulation of cell cycle quiescence|inhibition of stationary phase|down-regulation of stationary phase|inhibition of cell cycle quiescence|inhibition of establishment of cell quiescence|inhibition of G1/G0 transition|down regulation of G1 to G0 transition|down regulation of cell cycle quiescence|downregulation of stationary phase|down-regulation of cell cycle quiescence|down regulation of G1/G0 transition|negative regulation of cell cycle quiescence|downregulation of establishment of cell quiescence|negative regulation of stationary phase|negative regulation of G1/G0 transition|negative regulation of establishment of cell quiescence|down regulation of establishment of cell quiescence|down-regulation of G1/G0 transition|down-regulation of G1 to G0 transition|downregulation of G1 to G0 transition di 2014-09-19T22:23:22Z biological_process owl:Class GO:0048395 biolink:NamedThing regulation of intermediate mesodermal cell fate determination Any process that modulates the frequency, rate or extent of intermediate mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050198 biolink:NamedThing pinosylvin synthase activity Catalysis of the reaction: trans-cinnamoyl-CoA + 3 H(+) + 3 malonyl-CoA = 4 CO(2) + 4 CoA + pinosylvin. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:cinnamoyl-CoA malonyltransferase (cyclizing)|pine stilbene synthase activity|stilbene synthase activity RHEA:12552|MetaCyc:PINOSYLVIN-SYNTHASE-RXN|KEGG_REACTION:R02505|EC:2.3.1.146 molecular_function owl:Class GO:0035125 biolink:NamedThing embryonic anal fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the embryonic anal fin are generated and organized. An anal fin is an unpaired medial fin on the ventral aspect near the caudal end of a fish, which provides lateral stability while swimming. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035122 biolink:NamedThing embryonic medial fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the medial fin are generated and organized. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming. tmpzr1t_l9r_go_relaxed.owl embryonic unpaired fin morphogenesis biological_process owl:Class GO:0015636 biolink:NamedThing short-chain fatty acid transmembrane transporter activity Enables the transfer of short-chain fatty acids from one side of a membrane to the other. Short-chain fatty acids are fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short-chain fatty acid uptake transporter activity|short-chain fatty acid transporter activity GO:0015635 molecular_function owl:Class GO:0015848 biolink:NamedThing spermidine transport The directed movement of spermidine, N-(3-aminopropyl)-1,4-diaminobutane, a polyamine formed by the transfer of a propylamine group from decarboxylated S-adenosylmethionine to putrescine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018503 biolink:NamedThing trans-1,2-dihydrodiolphenanthrene dehydrogenase activity Catalysis of the reaction: trans-1,2-dihydrodiolphenanthrene + NAD+ = H+ + NADH + 1,2-dihydroxyphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0574 molecular_function owl:Class GO:0006689 biolink:NamedThing ganglioside catabolic process The chemical reactions and pathways resulting in the breakdown of ganglioside, a ceramide oligosaccharide carrying, in addition to other sugar residues, one or more sialic residues. tmpzr1t_l9r_go_relaxed.owl ganglioside breakdown|ganglioside degradation|ganglioside catabolism biological_process owl:Class GO:0021849 biolink:NamedThing neuroblast division in subventricular zone The division of neuroblasts in the subventricular zone of the forebrain. The interneuron precursors that these cells give rise to include adult olfactory bulb interneurons and migrate tangentially. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043217 biolink:NamedThing myelin maintenance The process of preserving the structure and function of mature myelin. This includes maintaining the compact structure of myelin necessary for its electrical insulating characteristics as well as the structure of non-compact regions such as Schmidt-Lantermann clefts and paranodal loops. This does not include processes responsible for maintaining the nodes of Ranvier, which are not part of the myelin sheath. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047025 biolink:NamedThing 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity Catalysis of the reaction: NAD+ + OH-acyl-[acyl-carrier protein] = NADH + H+ + B-ketoacyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl (3R)-3-hydroxyacyl-acyl-carrier-protein:NAD+ oxidoreductase activity|3-oxoacyl-[acyl-carrier protein] reductase (NADH) activity|3-oxoacyl-acyl carrier protein (reduced nicotinamide adenine dinucleotide) reductase activity|3-oxoacyl-acyl-carrier-protein reductase (NADH)|3-oxoacyl-ACP reductase (NADH) activity RHEA:19913|MetaCyc:1.1.1.212-RXN|EC:1.1.1.212 molecular_function owl:Class GO:0032267 biolink:NamedThing tRNA(Ile)-lysidine synthase activity Catalysis of the ligation of lysine onto the cytidine residue present at the wobble position (usually position 34) of an AUA-specific isoleucine tRNA, to form the derivative lysidine. This modification converts both the codon specificity of tRNA(Ile) from AUG to AUA and its amino acid specificity from methionine to isoleucine. tmpzr1t_l9r_go_relaxed.owl tRNA(Ile)-lysidine synthetase activity|tRNA(Ile)-2-lysyl-cytidine synthase activity EC:6.3.4.- molecular_function owl:Class GO:0010079 biolink:NamedThing maintenance of vegetative meristem identity The process in which an organism retains a population of vegetative meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010074 biolink:NamedThing maintenance of meristem identity The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl meristem cell maintenance|maintenance of meristem cell identity GO:0032503 biological_process owl:Class GO:0103020 biolink:NamedThing 1-deoxy-D-xylulose kinase activity Catalysis of the reaction: 1-deoxy-D-xylulose + ATP <=> H+ + 1-deoxy-D-xylulose 5-phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl RHEA:27990|MetaCyc:RXN0-382 molecular_function owl:Class GO:0009601 biolink:NamedThing detection of insect The series of events in which a stimulus from an insect is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of insect biological_process owl:Class GO:0052680 biolink:NamedThing epi-isozizaene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-epi-isozizaene + diphosphate. tmpzr1t_l9r_go_relaxed.owl (2E,6E)-farnesyl-diphosphate diphosphate-lyase [(+)-epi-isozizaene-forming] activity KEGG_REACTION:R07830|RHEA:25992|MetaCyc:RXN-9349|EC:4.2.3.37 molecular_function owl:Class GO:0102602 biolink:NamedThing cytochrome P450 dependent 16beta-hydroxy-beta-amyrin epoxidase activity Catalysis of the reaction: 16beta-hydroxy-beta-amyrin + O2 + H+ + NAD(P)H <=> 12,13beta-epoxy-16beta-hydroxy-beta-amyrin + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15386 molecular_function owl:Class GO:0140621 biolink:NamedThing type I pilus A short filamentous structure on the surface of a bacterial cell distinguished from other pili by their D-mannose-sensitive agglutinatination of erythrocytes. In E. coli, type I pili consist of a short tip fibrillum made up of the adhesin protein (FimH) and two minor subunits (FimG and FimF) that is joined to the pilus rod, a homopolymer of ~1000 FimA subunits. tmpzr1t_l9r_go_relaxed.owl type 1 pilus|type I fimbriae|type I pili https://github.com/geneontology/go-ontology/issues/14470 pg 2021-03-10T10:24:04Z cellular_component owl:Class GO:0005994 biolink:NamedThing melibiose metabolic process The chemical reactions and pathways involving melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose. tmpzr1t_l9r_go_relaxed.owl melibiose metabolism biological_process owl:Class GO:0017017 biolink:NamedThing MAP kinase tyrosine/serine/threonine phosphatase activity Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl dual-specificity MAP kinase phosphatase activity molecular_function owl:Class GO:0033549 biolink:NamedThing MAP kinase phosphatase activity Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase activity molecular_function owl:Class GO:0050535 biolink:NamedThing beta-primeverosidase activity Catalysis of the reaction: a 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranoside + H2O = 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranose + an alcohol. tmpzr1t_l9r_go_relaxed.owl 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranoside 6-O-(beta-D-xylosyl)-beta-D-glucohydrolase activity|b-primeverosidase activity MetaCyc:3.2.1.149-RXN|EC:3.2.1.149|RHEA:24480 molecular_function owl:Class GO:1904919 biolink:NamedThing transmembrane L-cystine transport from lysosomal lumen to cytosol The directed movement of L-cystine from the lysosomal lumen across the lysosomal membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl kmv 2016-01-21T16:28:02Z biological_process owl:Class GO:0090666 biolink:NamedThing scaRNA localization to Cajal body A process in which a small Cajal body-specific RNA is transported to, or maintained in, a Cajal body. tmpzr1t_l9r_go_relaxed.owl tb 2015-12-15T10:57:05Z biological_process owl:Class GO:0002355 biolink:NamedThing detection of tumor cell The series of events in which a stimulus from a tumor cell is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044378 biolink:NamedThing non-sequence-specific DNA binding, bending The activity of binding selectively and non-covalently to DNA in a sequence-independent manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. tmpzr1t_l9r_go_relaxed.owl DNA bending involving non-sequence-specific DNA binding jl 2011-12-08T02:02:13Z molecular_function owl:Class GO:0008301 biolink:NamedThing DNA binding, bending The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. tmpzr1t_l9r_go_relaxed.owl DNA bending involving DNA binding|DNA bending activity molecular_function owl:Class GO:0044470 biolink:NamedThing envenomation resulting in negative regulation of blood coagulation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction in the frequency, rate or extent of blood coagulation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T01:32:48Z biological_process owl:Class GO:0060354 biolink:NamedThing negative regulation of cell adhesion molecule production Any process that decreases the rate, frequency or extent of cell adhesion molecule production. Cell adhesion molecule production is the appearance of a cell adhesion molecule as a result of its biosynthesis or a decrease in its catabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904633 biolink:NamedThing regulation of glomerular visceral epithelial cell apoptotic process Any process that modulates the frequency, rate or extent of glomerular visceral epithelial cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of podocyte apoptotic process|regulation of glomerular visceral epithelial cell apoptosis|regulation of glomerular podocyte apoptotic process|regulation of podocyte apoptosis|regulation of glomerular podocyte apoptosis sl 2015-08-28T14:14:44Z biological_process owl:Class GO:0030420 biolink:NamedThing establishment of competence for transformation The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035842 biolink:NamedThing old cell tip after activation of bipolar cell growth A cell tip which has existed for at least one complete cell cycle, and at which polarized growth occurs, which is part of a cell that has activated bipolar cell growth (i.e. in which new end take-off, NETO, has taken place). For example, in fission yeast the cell end that existed prior to cell division grows immediately after division, and contains a distinctive complement of proteins including actin cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl post-NETO old cell tip|post-new end take-off old cell tip|post-NETO old cell end bf 2011-05-06T01:37:23Z cellular_component owl:Class GO:0004031 biolink:NamedThing aldehyde oxidase activity Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl quinoline oxidase activity|aldehyde:oxygen oxidoreductase activity Reactome:R-HSA-3204311|RHEA:16829|MetaCyc:ALDEHYDE-OXIDASE-RXN|EC:1.2.3.1 molecular_function owl:Class GO:0008658 biolink:NamedThing penicillin binding Binding to penicillin, an antibiotic that contains the condensed beta-lactamthiazolidine ring system. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045983 biolink:NamedThing positive regulation of purine nucleobase metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving purine bases. tmpzr1t_l9r_go_relaxed.owl upregulation of purine base metabolic process|activation of purine base metabolic process|up-regulation of purine base metabolic process|up regulation of purine base metabolic process|stimulation of purine base metabolic process|positive regulation of purine base metabolism|positive regulation of purine base metabolic process biological_process owl:Class GO:0102488 biolink:NamedThing dTTP phosphohydrolase activity Catalysis of the reaction: dTTP + 2 H2O = dTMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.5|MetaCyc:RXN-14200 molecular_function owl:Class GO:0046111 biolink:NamedThing xanthine biosynthetic process The chemical reactions and pathways resulting in the formation of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. tmpzr1t_l9r_go_relaxed.owl xanthine biosynthesis|xanthine formation|xanthine anabolism|xanthine synthesis biological_process owl:Class GO:0042352 biolink:NamedThing GDP-L-fucose salvage The formation of GDP-L-fucose from L-fucose, without de novo synthesis. L-fucose is phosphorylated by fucokinase and then converted by fucose-1-phosphate guanylyltransferase (EC:2.7.7.30). tmpzr1t_l9r_go_relaxed.owl GDP-L-fucose biosynthetic process, salvage pathway|GDP-L-fucose biosynthesis, salvage pathway MetaCyc:PWY-6 biological_process owl:Class GO:0060621 biolink:NamedThing negative regulation of cholesterol import Any process that decreases the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T01:46:21Z biological_process owl:Class GO:2000910 biolink:NamedThing negative regulation of sterol import Any process that stops, prevents or reduces the frequency, rate or extent of sterol import. tmpzr1t_l9r_go_relaxed.owl negative regulation of sterol influx|negative regulation of sterol uptake bf 2011-07-29T01:25:14Z biological_process owl:Class GO:0002052 biolink:NamedThing positive regulation of neuroblast proliferation Any process that activates or increases the rate of neuroblast proliferation. tmpzr1t_l9r_go_relaxed.owl stimulation of neuroblast proliferation|up-regulation of neuroblast proliferation|upregulation of neuroblast proliferation|activation of neuroblast proliferation|up regulation of neuroblast proliferation biological_process owl:Class GO:1901127 biolink:NamedThing candicidin biosynthetic process The chemical reactions and pathways resulting in the formation of candicidin. tmpzr1t_l9r_go_relaxed.owl candicidin anabolism|candicidin biosynthesis|candicidin synthesis|candicidin formation yaf 2012-07-11T03:17:02Z biological_process owl:Class GO:0010430 biolink:NamedThing fatty acid omega-oxidation A fatty acid oxidation process in which the methyl group at the end of the fatty acid molecule (the omega carbon) is first oxidized to a hydroxyl group, then to an oxo group, and finally to a carboxyl group. The long chain dicarboxylates derived from omega-oxidation then enter the beta-oxidation pathway for further degradation. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-2724 biological_process owl:Class GO:0018742 biolink:NamedThing epoxide hydrolase B activity Catalysis of the hydrolysis of the ether in chloro- or hydroxyepoxypropane to produce chloropropane diol or glycerol. Acts on R enantiomers. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0051|EC:3.3.2.- molecular_function owl:Class GO:0004301 biolink:NamedThing epoxide hydrolase activity Catalysis of the reaction: an epoxide + H2O = a glycol. tmpzr1t_l9r_go_relaxed.owl cytosolic epoxide hydrolase activity|trans-stilbene oxide hydrolase activity|epoxide hydratase activity|sEH|epoxide hydrase activity|aryl epoxide hydrase activity|soluble epoxide hydrolase activity|arene-oxide hydratase activity Reactome:R-HSA-2161961|Reactome:R-HSA-9024993|Reactome:R-HSA-9020257|MetaCyc:3.3.2.10-RXN|Reactome:R-HSA-9026008|Reactome:R-HSA-9018862|RHEA:19037|Reactome:R-HSA-9020253|EC:3.3.2.10|Reactome:R-HSA-9020252|Reactome:R-HSA-9018877|Reactome:R-HSA-9020258|Reactome:R-HSA-9024890|Reactome:R-HSA-9026000|UM-BBD_enzymeID:e0397|Reactome:R-HSA-9024973|Reactome:R-HSA-9020270|Reactome:R-HSA-9025998 molecular_function owl:Class GO:0032498 biolink:NamedThing detection of muramyl dipeptide The series of events in which a muramyl dipeptide stimulus is received by a cell and converted into a molecular signal. Muramyl dipeptide is derived from peptidoglycan. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032495 biolink:NamedThing response to muramyl dipeptide Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000931 biolink:NamedThing negative regulation of cellobiose metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of cellobiose metabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellobiose metabolism tt 2011-08-01T12:42:57Z biological_process owl:Class GO:0019782 biolink:NamedThing ISG15 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier ISG15, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl UBE1L molecular_function owl:Class GO:0008898 biolink:NamedThing S-adenosylmethionine-homocysteine S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine. tmpzr1t_l9r_go_relaxed.owl homocysteine transmethylase activity|S-adenosylmethionine homocysteine transmethylase activity|S-adenosyl-L-methionine:L-homocysteine methyltransferase activity|L-homocysteine S-methyltransferase activity|adenosylmethionine:homocysteine methyltransferase activity|S-adenosyl-L-methionine:L-homocysteine S-methyltransferase activity|S-adenosylmethionine-homocysteine transmethylase activity|S-adenosylmethionine:homocysteine methyltransferase activity|adenosylmethionine transmethylase activity|homocysteine methyltransferase activity MetaCyc:HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN|RHEA:21820 molecular_function owl:Class GO:0010868 biolink:NamedThing negative regulation of triglyceride biosynthetic process Any process that decreases the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl negative regulation of triacylglycerol biosynthetic process biological_process owl:Class GO:1903892 biolink:NamedThing negative regulation of ATF6-mediated unfolded protein response Any process that stops, prevents or reduces the frequency, rate or extent of the ATF6-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl downregulation of ATF6 signaling in response to endoplasmic reticulum stress|inhibition of ATF6-alpha UPR branch|down-regulation of ATF6-alpha UPR branch|negative regulation of ATF6 branch of UPR|downregulation of ATF6-alpha UPR branch|downregulation of UPR signaling by ATF6 stress sensor|down regulation of activating transcription factor 6 signaling in unfolded protein response|negative regulation of ATF6 signaling in response to endoplasmic reticulum stress|down regulation of ATF6-mediated unfolded protein response|down-regulation of ATF6-beta UPR branch|down-regulation of ATF6 signaling in response to endoplasmic reticulum stress|negative regulation of ATF6-beta UPR branch|inhibition of UPR signaling by ATF6 stress sensor|down regulation of ATF6-beta UPR branch|inhibition of ATF6 signaling in response to endoplasmic reticulum stress|down-regulation of ATF6-mediated unfolded protein response|downregulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|negative regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|down regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|downregulation of ATF6 branch of UPR|downregulation of ATF6-beta UPR branch|down-regulation of ATF6 branch of UPR|inhibition of ATF6-mediated unfolded protein response|down-regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling|down-regulation of UPR signaling by ATF6 stress sensor|negative regulation of activating transcription factor 6 signaling in unfolded protein response|inhibition of ATF6-beta UPR branch|down regulation of UPR signaling by ATF6 stress sensor|down regulation of ATF6-alpha UPR branch|downregulation of activating transcription factor 6 signaling in unfolded protein response|inhibition of ATF6 branch of UPR|downregulation of ATF6-mediated unfolded protein response|down-regulation of activating transcription factor 6 signaling in unfolded protein response|down regulation of ATF6 branch of UPR|inhibition of activating transcription factor 6 signaling in unfolded protein response|inhibition of endoplasmic reticulum unfolded protein response; ATF6 signaling|negative regulation of ATF6-alpha UPR branch|negative regulation of UPR signaling by ATF6 stress sensor|down regulation of ATF6 signaling in response to endoplasmic reticulum stress bf 2015-02-09T10:17:26Z biological_process owl:Class GO:0110019 biolink:NamedThing IRES-dependent translational initiation of circular RNA The process where translation initiation recruits the 40S ribosomal subunits via an internal ribosome entry segment (IRES) before an AUG codon is encountered in an appropriate sequence context to initiate circular mRNA translation. tmpzr1t_l9r_go_relaxed.owl IRES-dependent translational initiation of circRNA kmv 2017-06-08T15:36:38Z biological_process owl:Class GO:0110018 biolink:NamedThing cap-independent translational initiation of circular RNA The process where translation initiation recruits the 40S ribosomal subunits in a cap and 5' end independent fashion before an AUG codon is encountered in an appropriate sequence context to initiate circRNA translation. tmpzr1t_l9r_go_relaxed.owl cap-independent translational initiation of circRNA kmv 2017-06-08T15:22:35Z biological_process owl:Class GO:0051290 biolink:NamedThing protein heterotetramerization The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical. tmpzr1t_l9r_go_relaxed.owl protein heterotetramer formation|protein heterotetramer biosynthesis|protein heterotetramer biosynthetic process|protein heterotetramer assembly biological_process owl:Class GO:0098600 biolink:NamedThing selenomethionine gamma-lyase activity Catalysis of the reaction: L-Selenomethionine + H2O => Methaneselenol + Ammonia + 2-oxobutanoic acid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408537 dos 2014-04-15T15:00:28Z molecular_function owl:Class GO:0098891 biolink:NamedThing extrinsic component of presynaptic active zone membrane The component of the presynaptic active zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047703 biolink:NamedThing beta-nitroacrylate reductase activity Catalysis of the reaction: 3-nitropropanoate + NADP(+) = 3-nitroacrylate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-nitropropanoate:NADP+ oxidoreductase activity|b-nitroacrylate reductase activity EC:1.3.1.16|RHEA:23892|MetaCyc:BETA-NITROACRYLATE-REDUCTASE-RXN|KEGG_REACTION:R03900 molecular_function owl:Class GO:0010316 biolink:NamedThing pyrophosphate-dependent phosphofructokinase complex Heterodimeric complex that catalyzes the pyrophosphate-dependent phosphorylation of D-fructose 6-phosphate into D-fructose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl PFK complex cellular_component owl:Class GO:0032398 biolink:NamedThing MHC class Ib protein complex A transmembrane protein complex composed of a MHC class Ib alpha chain and, in most cases, an invariant beta2-microglobin chain, and with or without a bound peptide or lipid antigen. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003375 biolink:NamedThing regulation of dynamin family protein polymerization involved in membrane fission Any process that modulates the rate, frequency, or extent of dynamin family protein polymerization involved in mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T05:50:15Z biological_process owl:Class GO:0034420 biolink:NamedThing co-translational protein acetylation The addition of an acetyl group to one or more amino acids in a protein, occurring before the protein has been completely translated and released from the ribosome. tmpzr1t_l9r_go_relaxed.owl cotranslational protein amino acid acetylation|co-translational protein amino acid acetylation biological_process owl:Class GO:1901769 biolink:NamedThing carbapenem biosynthetic process The chemical reactions and pathways resulting in the formation of carbapenem. tmpzr1t_l9r_go_relaxed.owl carbapenem biosynthesis|carbapenem anabolism|carbapenem synthesis|carbapenem formation yaf 2013-01-15T10:09:06Z biological_process owl:Class GO:0051937 biolink:NamedThing catecholamine transport The directed movement of catecholamines, a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905892 biolink:NamedThing negative regulation of cellular response to thapsigargin Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to thapsigargin. tmpzr1t_l9r_go_relaxed.owl inhibition of cellular response to thapsigargin|downregulation of cellular response to thapsigargin|down regulation of cellular response to thapsigargin|down-regulation of cellular response to thapsigargin bc 2017-02-01T11:36:15Z biological_process owl:Class GO:1905117 biolink:NamedThing regulation of ribonucleoside-diphosphate reductase activity Any process that modulates the frequency, rate or extent of ribonucleoside-diphosphate reductase activity. tmpzr1t_l9r_go_relaxed.owl regulation of purine/pyrimidine nucleoside diphosphate reduction|regulation of class I ribonucleotide reductase activity|regulation of adenosylcobalamin-dependent ribonucleotide reductase activity|regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity|regulation of class II ribonucleotide reductase activity|regulation of ribonucleotide reductase activity|regulation of ribonucleoside 5'-diphosphate reductase activity|regulation of class II ribonucleoside-diphosphate reductase activity|regulation of ribonucleotide diphosphate reductase activity|regulation of RNR|regulation of nucleoside diphosphate reductase activity|regulation of class III ribonucleotide reductase activity|regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity An example of this is DRE2 in Saccharomyces cerevisiae (UniProt ID P36152) in PMID:24733891 (inferred from mutant phenotype). bhm 2016-04-08T08:06:17Z biological_process owl:Class GO:0010945 biolink:NamedThing CoA pyrophosphatase activity Catalysis of the reaction: coenzyme A or its derivatives + H2O = 3',5'-ADP + 4'-phosphopantetheine. tmpzr1t_l9r_go_relaxed.owl conezyme A pyrophosphatase activity Reactome:R-HSA-6809354|Reactome:R-HSA-6810474 tb 2009-04-22T02:06:40Z molecular_function owl:Class GO:0090439 biolink:NamedThing tetraketide alpha-pyrone synthase activity Catalyzes the reaction: a hydroxyacyl-CoA + 3 malonyl-CoA + 2 H+ = a hydroxylated tetraketide alpha-pyrone + 3 CO2 + 4 coenzyme A . tmpzr1t_l9r_go_relaxed.owl tb 2012-08-09T14:35:06Z molecular_function owl:Class GO:0102303 biolink:NamedThing resveratrol 3,5-O-dimethyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + trans-resveratrol <=> 2 S-adenosyl-L-homocysteine + pterostilbene + 2 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:32103|EC:2.1.1.240|MetaCyc:RXN-12805 molecular_function owl:Class GO:0005427 biolink:NamedThing proton-dependent oligopeptide secondary active transmembrane transporter activity Enables the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement. tmpzr1t_l9r_go_relaxed.owl hydrogen/oligopeptide symporter|proton-dependent oligopeptide transporter activity molecular_function owl:Class GO:0102411 biolink:NamedThing quercetin-3,4'-O-glucosyltransferase activity Catalysis of the reaction: quercetin-3-glucoside + UDP-alpha-D-glucose(2-) <=> quercetin 3,4'-O-diglucoside + UDP(3-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13766 molecular_function owl:Class GO:0001981 biolink:NamedThing baroreceptor detection of arterial stretch The series of events by which the change in diameter of an artery is detected and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001175 biolink:NamedThing positive regulation of histone H2B conserved C-terminal lysine ubiquitination Any process that activates or increases the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination. tmpzr1t_l9r_go_relaxed.owl positive regulation of fission yeast H2B K119 ubiquitination|positive regulation of budding yeast H2B K123 ubiquitination|positive regulation of mammalian H2B K120 ubiquitination se 2011-10-29T06:28:59Z biological_process owl:Class GO:2001168 biolink:NamedThing positive regulation of histone H2B ubiquitination Any process that activates or increases the frequency, rate or extent of histone H2B ubiquitination. tmpzr1t_l9r_go_relaxed.owl se 2011-10-25T10:50:01Z biological_process owl:Class GO:0010971 biolink:NamedThing positive regulation of G2/M transition of mitotic cell cycle Any signalling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M transition of mitotic cell cycle|positive regulation of mitotic entry tb 2009-06-01T10:16:34Z GO:0031662 biological_process owl:Class GO:0110136 biolink:NamedThing protein-RNA complex remodeling The acquisition, loss, or modification of macromolecules within a protein-RNA complex, resulting in the alteration of an existing complex. tmpzr1t_l9r_go_relaxed.owl kmv 2019-01-22T19:23:17Z biological_process owl:Class GO:0042399 biolink:NamedThing ectoine metabolic process The chemical reactions and pathways involving ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria. tmpzr1t_l9r_go_relaxed.owl ectoine metabolism biological_process owl:Class GO:0034479 biolink:NamedThing phosphatidylglycerol phospholipase C activity Catalysis of the reaction: a phosphatidylglycerol + H2O = 1,2-diacylglycerol + glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900762 biolink:NamedThing averantin catabolic process The chemical reactions and pathways resulting in the breakdown of averantin. tmpzr1t_l9r_go_relaxed.owl averantin catabolism|averantin degradation|averantin breakdown di 2012-06-04T09:14:45Z biological_process owl:Class GO:0047144 biolink:NamedThing 2-acylglycerol-3-phosphate O-acyltransferase activity Catalysis of the reaction: 2-acyl-sn-glycerol 3-phosphate + acyl-CoA = L-phosphatidate + CoA. tmpzr1t_l9r_go_relaxed.owl 2-acylglycerophosphate acyltransferase activity|acyl-CoA:2-acyl-sn-glycerol 3-phosphate O-acyltransferase activity Reactome:R-HSA-1482635|EC:2.3.1.52|MetaCyc:2-ACYL2.3.1.15-RXN|Reactome:R-HSA-1482546|RHEA:14233|Reactome:R-HSA-1482646|Reactome:R-HSA-1482533|Reactome:R-HSA-1482691|Reactome:R-HSA-1482626 molecular_function owl:Class GO:0047748 biolink:NamedThing cholestanetetraol 26-dehydrogenase activity Catalysis of the reaction: 5-beta-cholestane-3-alpha,7-alpha,12-alpha,26-tetraol + NAD+ = 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestan-26-al + NADH. tmpzr1t_l9r_go_relaxed.owl TEHC-NAD oxidoreductase activity|5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol dehydrogenase activity|cholestanetetrol 26-dehydrogenase activity|5beta-cholestane-3alpha,7alpha,12alpha,26-tetraol:NAD+ 26-oxidoreductase activity RHEA:34631|MetaCyc:CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN molecular_function owl:Class GO:0097075 biolink:NamedThing interferon regulatory factor 3-interferon regulatory factor 7 complex An interferon regulatory factor complex that consists of a heterodimer of interferon regulatory factor 3 and interferon regulatory factor 7. tmpzr1t_l9r_go_relaxed.owl IRF3:IRF7 complex pr 2011-06-15T04:33:36Z cellular_component owl:Class GO:0070072 biolink:NamedThing vacuolar proton-transporting V-type ATPase complex assembly The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl V-ATPase complex assembly|V-ATPase assembly biological_process owl:Class GO:0070070 biolink:NamedThing proton-transporting V-type ATPase complex assembly The aggregation, arrangement and bonding together of a proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across a concentration gradient. tmpzr1t_l9r_go_relaxed.owl V-ATPase complex assembly|V-ATPase assembly biological_process owl:Class GO:0062071 biolink:NamedThing Pi Mi complex A transcription factor complex composed of a homeodomain protein and the M-specific peptide Mi that acts at the regulatory region of genes required for the activation of meiosis. tmpzr1t_l9r_go_relaxed.owl dph 2018-09-04T13:40:52Z cellular_component owl:Class GO:0019556 biolink:NamedThing histidine catabolic process to glutamate and formamide The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including glutamate and formamide. tmpzr1t_l9r_go_relaxed.owl histidine degradation to glutamate and formamide|histidine breakdown to glutamate and formamide MetaCyc:HISDEG-PWY biological_process owl:Class GO:0018361 biolink:NamedThing peptidyl-glutamine 2-methylation The methylation of glutamine to form 2-methyl-L-glutamine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0273 biological_process owl:Class GO:0018364 biolink:NamedThing peptidyl-glutamine methylation The addition of a methyl group to a glutamine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047860 biolink:NamedThing diiodophenylpyruvate reductase activity Catalysis of the reaction: 3-(3,5-diiodo-4-hydroxyphenyl)lactate + NAD(+) = 3-(3,5-diiodo-4-hydroxyphenyl)pyruvate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl KAR|2-oxo acid reductase activity|aromatic alpha-keto acid|3-(3,5-diiodo-4-hydroxyphenyl)lactate:NAD+ oxidoreductase activity MetaCyc:DIIODOPHENYLPYRUVATE-REDUCTASE-RXN|EC:1.1.1.96|KEGG_REACTION:R03431|RHEA:20293 molecular_function owl:Class GO:0046074 biolink:NamedThing dTMP catabolic process The chemical reactions and pathways resulting in the breakdown of dTMP, deoxyribosylthymine monophosphate. tmpzr1t_l9r_go_relaxed.owl dTMP breakdown|dTMP degradation|dTMP catabolism biological_process owl:Class GO:0019472 biolink:NamedThing 4-hydroxyproline biosynthetic process The chemical reactions and pathways resulting in the formation of 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyproline biosynthesis|4-hydroxyproline synthesis|4-hydroxyproline formation|4-hydroxyproline anabolism biological_process owl:Class GO:0005749 biolink:NamedThing mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. tmpzr1t_l9r_go_relaxed.owl mitochondrial fumarate reductase complex GO:0009362|GO:0019738|GO:0008136|GO:0030390 cellular_component owl:Class GO:1901267 biolink:NamedThing cephalosporin C catabolic process The chemical reactions and pathways resulting in the breakdown of cephalosporin C. tmpzr1t_l9r_go_relaxed.owl cephalosporin C catabolism|cephalosporin C breakdown|cephalosporin C degradation yaf 2012-08-17T14:26:19Z biological_process owl:Class GO:0046288 biolink:NamedThing isoflavonoid catabolic process The chemical reactions and pathways resulting in the breakdown of isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids. tmpzr1t_l9r_go_relaxed.owl isoflavonoid breakdown|isoflavonoid degradation|isoflavonoid catabolism biological_process owl:Class GO:0061710 biolink:NamedThing L-threonylcarbamoyladenylate synthase Catalysis of the reaction: L-threonine + ATP + bicarbonate = L-threonylcarbamoyladenylate + diphosphate + H(2)O. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.87|MetaCyc:RXN-14569|RHEA:36407 dph 2015-06-23T08:25:14Z molecular_function owl:Class GO:1990452 biolink:NamedThing Parkin-FBXW7-Cul1 ubiquitin ligase complex A ubiquitin ligase complex containing Parkin (PARK2), the F-box protein FBXW7 (also called SEL-10) and a cullin from the Cul1 subfamily; substrate specificity is conferred by the F-box protein. tmpzr1t_l9r_go_relaxed.owl Parkin-HSel-10-Cullin-1 complex|Parkin-FBXW7-Cul1 protein complex|Parkin/Cul1/F-box protein complex|PRKN-FBXW7-Cul1 complex|Park2-FBXW7-Cul1 complex bf 2014-08-07T14:25:49Z cellular_component owl:Class GO:0140347 biolink:NamedThing N-retinylidene-phosphatidylethanolamine flippase activity Catalysis of the movement of N-retinylidene-N-retinylphosphatidylethanolamine from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl N-retinylidene-phosphatidylethanolamine flippase activity (exoplasmic to cytosolic leaftlet) pg 2019-05-16T13:44:51Z molecular_function owl:Class GO:0003045 biolink:NamedThing regulation of systemic arterial blood pressure by physical factors The regulation of blood pressure mediated by detection of forces within the circulatory system. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by physical factors biological_process owl:Class GO:0003073 biolink:NamedThing regulation of systemic arterial blood pressure The process that modulates the force with which blood travels through the systemic arterial circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018365 biolink:NamedThing protein-serine epimerase activity Catalysis of the reaction: (protein)-L-serine = (protein)-D-serine. tmpzr1t_l9r_go_relaxed.owl protein-serine racemase activity MetaCyc:5.1.1.16-RXN|RHEA:10660|EC:5.1.1.16 molecular_function owl:Class GO:0045347 biolink:NamedThing negative regulation of MHC class II biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II. tmpzr1t_l9r_go_relaxed.owl negative regulation of MHC class II anabolism|negative regulation of MHC class II synthesis|down regulation of MHC class II biosynthetic process|negative regulation of MHC class II formation|downregulation of MHC class II biosynthetic process|negative regulation of MHC class II biosynthesis|negative regulation of major histocompatibility complex class II biosynthetic process|down-regulation of MHC class II biosynthetic process|negative regulation of major histocompatibility complex class II biosynthesis|inhibition of MHC class II biosynthetic process biological_process owl:Class GO:0006697 biolink:NamedThing ecdysone biosynthetic process The chemical reactions and pathways resulting in the formation of ecdysone, (22R)-2-beta,3-beta,14,22,25-pentahydroxycholest-7-en-6-one, an ecdysteroid found in insects. tmpzr1t_l9r_go_relaxed.owl ecdysone formation|ecdysone synthesis|ecdysone biosynthesis|ecdysone anabolism biological_process owl:Class GO:0061493 biolink:NamedThing central plaque of mitotic spindle pole body One of three laminate structures that form the mitotic spindle pole body; the inner plaque is on the nuclear face of the spindle pole body. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-11T09:08:26Z cellular_component owl:Class GO:0005823 biolink:NamedThing central plaque of spindle pole body One of three laminate structures that form the spindle pole body; the central plaque is embedded in the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070814 biolink:NamedThing hydrogen sulfide biosynthetic process The chemical reactions and pathways resulting in the formation of hydrogen sulfide, H2S. tmpzr1t_l9r_go_relaxed.owl hydrogen sulfide synthesis|hydrogen sulfide anabolism|hydrogen sulphide biosynthetic process|hydrogen sulfide biosynthesis|hydrogen sulphide biosynthesis|hydrogen sulfide formation mah 2009-07-09T10:45:02Z biological_process owl:Class GO:0004612 biolink:NamedThing phosphoenolpyruvate carboxykinase (ATP) activity Catalysis of the reaction: ATP + oxaloacetate = ADP + CO(2) + H(+) + phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl ATP:oxaloacetate carboxy-lyase (transphosphorylating)|phosphopyruvate carboxykinase|PEPCK (ATP)|phosphopyruvate carboxykinase (adenosine triphosphate)|PEPK|phosphoenolpyruvic carboxykinase|phosphopyruvate carboxylase (ATP)|ATP:oxaloacetate carboxy-lyase (transphosphorylating; phosphoenolpyruvate-forming)|phosphoenolpyruvate carboxylase (ATP) RHEA:18617|MetaCyc:PEPCARBOXYKIN-RXN|KEGG_REACTION:R00341|EC:4.1.1.49 molecular_function owl:Class GO:0010199 biolink:NamedThing organ boundary specification between lateral organs and the meristem The process in which boundaries between lateral organs and the meristem is established and maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071294 biolink:NamedThing cellular response to zinc ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to zinc mah 2009-12-10T04:17:10Z biological_process owl:Class GO:0009855 biolink:NamedThing determination of bilateral symmetry The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. tmpzr1t_l9r_go_relaxed.owl determination of bilateral asymmetry biological_process owl:Class GO:0052319 biolink:NamedThing regulation of phytoalexin biosynthetic process Any process that modulates the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins. tmpzr1t_l9r_go_relaxed.owl regulation of phytoalexin biosynthesis biological_process owl:Class GO:0000906 biolink:NamedThing 6,7-dimethyl-8-ribityllumazine synthase activity Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate. tmpzr1t_l9r_go_relaxed.owl lumazine synthase activity MetaCyc:LUMAZINESYN-RXN|RHEA:26152|EC:2.5.1.78 molecular_function owl:Class GO:0099632 biolink:NamedThing protein transport within plasma membrane A process in which protein is transported from one region of the plasma membrane to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009348 biolink:NamedThing ornithine carbamoyltransferase complex A homotrimeric protein complex that catalyzes the transfer of a carbamoyl group to ornithine, forming citrulline. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901444 biolink:NamedThing positive regulation of response to furfural Any process that activates or increases the frequency, rate or extent of response to furfural. tmpzr1t_l9r_go_relaxed.owl upregulation of response to furfural|up-regulation of response to furfural|activation of response to furfural|up regulation of response to furfural tt 2012-10-02T14:10:51Z biological_process owl:Class GO:1900751 biolink:NamedThing 4-(trimethylammonio)butanoate transport The directed movement of a 4-(trimethylammonio)butanoate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl Actinine transport|gamma-butyrobetaine transport|butyrobetaine transport|C7H15NO2 transport|deoxycarnitine transport|gamma-Butyrobetain transport|4-(N-trimethylamino)butyrate transport|4-butyrobetaine transport jl 2012-05-29T02:32:37Z biological_process owl:Class GO:0002365 biolink:NamedThing gamma-delta T cell lineage commitment The process in which a pro-T cell becomes committed to becoming a gamma-delta T cell. tmpzr1t_l9r_go_relaxed.owl gamma-delta T-cell lineage commitment|gamma-delta T-lymphocyte lineage commitment|gamma-delta T lymphocyte lineage commitment biological_process owl:Class GO:0051844 biolink:NamedThing translocation of peptides or proteins into symbiont The directed movement of peptides or proteins produced by an organism to a location inside the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl transport of peptides or proteins into symbiont biological_process owl:Class GO:0051862 biolink:NamedThing translocation of molecules into symbiont The directed movement of molecule(s) produced by an organism to a location inside the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl transport of molecules into symbiont biological_process owl:Class GO:0004494 biolink:NamedThing methylmalonyl-CoA mutase activity Catalysis of the reaction: (R)-methylmalonyl-CoA = succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl methylmalonyl coenzyme A carbonylmutase activity|(S)-methylmalonyl-CoA mutase activity|methylmalonyl coenzyme A mutase activity|(R)-methylmalonyl-CoA CoA-carbonylmutase activity|(R)-2-methyl-3-oxopropanoyl-CoA CoA-carbonylmutase activity|methylmalonyl-CoA CoA-carbonyl mutase activity RHEA:22888|EC:5.4.99.2|MetaCyc:METHYLMALONYL-COA-MUT-RXN|Reactome:R-HSA-3322971|Reactome:R-HSA-71010|UM-BBD_reactionID:r0922|KEGG_REACTION:R00833 molecular_function owl:Class GO:0014702 biolink:NamedThing free sarcoplasmic reticulum membrane The part of the sarcoplasmic reticulum membrane that contains calcium pumps and is devoted to calcium uptake. The free sarcoplasmic reticulum membrane consists of the longitudinal sarcoplasmic reticulum membrane and the non-junctional region of the terminal cisterna membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009149 biolink:NamedThing pyrimidine nucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside triphosphate degradation|pyrimidine nucleoside triphosphate breakdown|pyrimidine nucleoside triphosphate catabolism biological_process owl:Class GO:1900044 biolink:NamedThing regulation of protein K63-linked ubiquitination Any process that modulates the frequency, rate or extent of protein K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl regulation of protein K63-linked polyubiquitination bf 2012-01-19T11:44:37Z biological_process owl:Class GO:0140077 biolink:NamedThing positive regulation of lipoprotein transport Any process that activates or increases the rate or extent of lipoprotein transport. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-21T15:41:54Z biological_process owl:Class GO:0097202 biolink:NamedThing activation of cysteine-type endopeptidase activity Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase. tmpzr1t_l9r_go_relaxed.owl activation of caspase activity|activation of metacaspase activity This term should be used to annotate gene products within the context of cellular processes other than apoptotic cell death (e.g., cell cycle arrest). To annotate gene products involved in activation of cysteine-type endopeptidases where the activation results in apoptotic process, please use the more granular term GO:0006919. pr 2011-12-19T02:44:04Z biological_process owl:Class GO:1905723 biolink:NamedThing negative regulation of trypanothione biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of trypanothione biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of trypanothione biosynthesis|down-regulation of trypanothione synthesis|inhibition of trypanothione formation|down regulation of trypanothione anabolism|downregulation of trypanothione formation|negative regulation of trypanothione formation|down-regulation of trypanothione anabolism|inhibition of trypanothione synthesis|down-regulation of trypanothione formation|down-regulation of trypanothione biosynthetic process|inhibition of trypanothione biosynthetic process|negative regulation of trypanothione synthesis|down regulation of trypanothione formation|inhibition of trypanothione biosynthesis|down regulation of trypanothione biosynthetic process|downregulation of trypanothione synthesis|downregulation of trypanothione biosynthesis|inhibition of trypanothione anabolism|negative regulation of trypanothione biosynthesis|downregulation of trypanothione biosynthetic process|downregulation of trypanothione anabolism|negative regulation of trypanothione anabolism|down regulation of trypanothione biosynthesis|down regulation of trypanothione synthesis rz 2016-11-25T14:44:42Z biological_process owl:Class GO:0002826 biolink:NamedThing negative regulation of T-helper 1 type immune response Any process that stops, prevents, or reduces the frequency, rate, or extent of a T-helper 1 type immune response. tmpzr1t_l9r_go_relaxed.owl down-regulation of T-helper 1 type immune response|downregulation of T-helper 1 type immune response|inhibition of T-helper 1 type immune response|down regulation of T-helper 1 type immune response biological_process owl:Class GO:0061216 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in mesonephros development Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the mesonephros progressing from its initial formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:32:27Z biological_process owl:Class GO:0030641 biolink:NamedThing regulation of cellular pH Any process involved in the maintenance of an internal equilibrium of hydrogen ions (protons) within a cell or between a cell and its external environment. tmpzr1t_l9r_go_relaxed.owl cellular hydrogen ion homeostasis|proton homeostasis biological_process owl:Class GO:0140243 biolink:NamedThing regulation of translation at synapse Any process that regulates translation occurring at the synapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T09:38:26Z biological_process owl:Class GO:0045755 biolink:NamedThing negative regulation of initiation of acetate catabolic process by acetate Any process that stops or prevents the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl negative regulation of initiation of acetate breakdown by acetate|down-regulation of initiation of acetate catabolic process by acetate|inhibition of initiation of acetate catabolic process by acetate|negative regulation of initiation of acetate degradation by acetate|downregulation of initiation of acetate catabolic process by acetate|down regulation of initiation of acetate catabolic process by acetate biological_process owl:Class GO:0031064 biolink:NamedThing negative regulation of histone deacetylation Any process that stops, prevents, or reduces the frequency, rate or extent of the removal of acetyl groups from histones. tmpzr1t_l9r_go_relaxed.owl down regulation of histone deacetylation|inhibition of histone deacetylation|downregulation of histone deacetylation|down-regulation of histone deacetylation biological_process owl:Class GO:1901559 biolink:NamedThing response to ribavirin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ribavirin stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2012-11-02T09:46:28Z biological_process owl:Class GO:0010255 biolink:NamedThing glucose mediated signaling pathway The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes. tmpzr1t_l9r_go_relaxed.owl glucose mediated signalling biological_process owl:Class GO:1901384 biolink:NamedThing positive regulation of chorionic trophoblast cell proliferation Any process that activates or increases the frequency, rate or extent of chorionic trophoblast cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of chorionic trophoblast cell proliferation|upregulation of chorionic trophoblast cell proliferation|up-regulation of chorionic trophoblast cell proliferation|activation of chorionic trophoblast cell proliferation vk 2012-10-01T10:04:41Z biological_process owl:Class GO:0034661 biolink:NamedThing ncRNA catabolic process The chemical reactions and pathways resulting in the breakdown of non-coding RNA transcripts (ncRNAs). Includes the breakdown of cryptic unstable transcripts (CUTs). tmpzr1t_l9r_go_relaxed.owl ncRNA catabolism|ncRNA degradation|ncRNA breakdown biological_process owl:Class GO:0047914 biolink:NamedThing gamma-glutamylhistamine synthase activity Catalysis of the reaction: histamine + L-glutamate + ATP = N(alpha)-gamma-L-glutamylhistamine + products of ATP breakdown. tmpzr1t_l9r_go_relaxed.owl L-glutamate:histamine ligase activity|g-glutamylhistamine synthase activity|gamma-GHA synthetase activity|gamma-glutaminylhistamine synthetase activity MetaCyc:GAMMA-GLUTAMYLHISTAMINE-SYNTHASE-RXN|RHEA:18881|EC:6.3.2.18 molecular_function owl:Class GO:1903707 biolink:NamedThing negative regulation of hemopoiesis Any process that stops, prevents or reduces the frequency, rate or extent of hemopoiesis. tmpzr1t_l9r_go_relaxed.owl inhibition of haemopoiesis|downregulation of hematopoiesis|down-regulation of blood cell biosynthesis|downregulation of blood cell formation|down-regulation of hematopoiesis|negative regulation of hematopoiesis|negative regulation of blood cell biosynthesis|inhibition of hematopoiesis|inhibition of hemopoiesis|down regulation of blood cell biosynthesis|down regulation of blood cell formation|downregulation of hemopoiesis|down-regulation of hemopoiesis|inhibition of blood cell formation|down regulation of haemopoiesis|downregulation of blood cell biosynthesis|down-regulation of blood cell formation|down-regulation of haemopoiesis|down regulation of hematopoiesis|negative regulation of haemopoiesis|negative regulation of blood cell formation|downregulation of haemopoiesis|down regulation of hemopoiesis|inhibition of blood cell biosynthesis An example of this is Atg7 in mouse (UniProt symbol, Q9D906) in PMID:20080761, inferred from mutant phenotype. pad 2014-12-04T15:34:21Z biological_process owl:Class GO:0009309 biolink:NamedThing amine biosynthetic process The chemical reactions and pathways resulting in the formation of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. tmpzr1t_l9r_go_relaxed.owl amine anabolism|amine formation|amine biosynthesis|amine synthesis biological_process owl:Class GO:0102673 biolink:NamedThing fatty aldehyde dehydrogenase activity Catalysis of the reaction: NAD(1-) + H2O + a fatty aldehyde <=> NADH(2-) + 2 H+ + a fatty acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4142 molecular_function owl:Class GO:0036416 biolink:NamedThing tRNA stabilization Prevention of degradation of tRNA molecules. tmpzr1t_l9r_go_relaxed.owl bf 2013-08-22T15:41:26Z biological_process owl:Class GO:0010252 biolink:NamedThing auxin homeostasis A homeostatic process that maintains an endogenous steady-state concentration of primary auxin, or constant level of auxin in a biological system, by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044209 biolink:NamedThing AMP salvage The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from derivatives of it (either adenine, ADP or adenosine 3',5'-bisphosphate) without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl adenosine monophosphate salvage|AMP biosynthetic process via salvage pathway jl 2009-10-22T02:52:11Z biological_process owl:Class GO:0099048 biolink:NamedThing CRISPR-cas system An adaptive immune response of bacteria that serves to clear host cells of foreign DNA and RNA. It has three distinct stage: acquisition of foreign DNA by integration into CRISPR loci in the host chromosome, CRISPR RNA (crRNA) biogenesis, and target interference. CISPR stands for Clustered Regularly Interspaced Short Palindromic Repeat, which describes the nature of the loci. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046202 biolink:NamedThing cyanide biosynthetic process The chemical reactions and pathways resulting in the formation of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration. tmpzr1t_l9r_go_relaxed.owl cyanide biosynthesis|cyanide formation|cyanide synthesis|cyanide anabolism biological_process owl:Class GO:0050695 biolink:NamedThing benzoylformate decarboxylase activity Catalysis of the reaction: benzoylformate = benzaldehyde + CO2. tmpzr1t_l9r_go_relaxed.owl benzoylformate carboxy-lyase (benzaldehyde-forming)|phenylglyoxylate decarboxylase activity|benzoylformate carboxy-lyase activity UM-BBD_reactionID:r1049|RHEA:23368|EC:4.1.1.7|MetaCyc:BENZOYLFORMATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0070573 biolink:NamedThing metallodipeptidase activity Catalysis of the hydrolysis of a dipeptide by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. tmpzr1t_l9r_go_relaxed.owl metalloexodipeptidase activity|metallo-exo-dipeptidase activity Reactome:R-HSA-2022398|Reactome:R-HSA-2022405|Reactome:R-HSA-2065355 mah 2009-04-15T03:11:29Z molecular_function owl:Class GO:0008650 biolink:NamedThing rRNA (uridine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methyluridine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6793127 molecular_function owl:Class GO:0016436 biolink:NamedThing rRNA (uridine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyluridine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000954 biolink:NamedThing methionine catabolic process to 3-methylthiopropanoate The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When methionine is used as the substrate, 3-methylthiopropanoate is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990512 biolink:NamedThing Cry-Per complex Nuclear transcriptional repressor complex that is capable of negatively regulating CLOCK-BMAL-dependent transactivation of genes in a delayed negative feedback manner which generates circadian rhythms. tmpzr1t_l9r_go_relaxed.owl An example of this is Cry1 in mouse (P97784) in PMID:24855952 (inferred from physical interaction). bhm 2014-10-08T10:53:07Z cellular_component owl:Class GO:0098508 biolink:NamedThing endothelial to hematopoietic transition The generation of hematopoietic stem cells from hemogenic endothelial cells by a process that includes tight-junction dissolution and loss of cell polarity followed by delamination from the endothelium. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-24T15:20:39Z biological_process owl:Class GO:0032910 biolink:NamedThing regulation of transforming growth factor beta3 production Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta3. tmpzr1t_l9r_go_relaxed.owl regulation of transforming growth factor-beta3 production|regulation of TGFB3 production|regulation of TGF-B3 production biological_process owl:Class GO:2000889 biolink:NamedThing cellodextrin metabolic process The chemical reactions and pathways involving a cellodextrin. tmpzr1t_l9r_go_relaxed.owl cellodextrin metabolism jl 2011-07-28T01:00:04Z biological_process owl:Class GO:0044729 biolink:NamedThing hemi-methylated DNA-binding Binding to double-stranded hemi-methylated DNA at replication foci (one strand methylated, while the other strand is unmethylated). Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks. tmpzr1t_l9r_go_relaxed.owl double-stranded hemi-methylated DNA binding jl 2012-10-24T14:58:14Z molecular_function owl:Class GO:0033846 biolink:NamedThing adenosyl-fluoride synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + fluoride = 5'-deoxy-5'-fluoroadenosine + L-methionine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:fluoride adenosyltransferase activity|fluorinase activity RHEA:16661|EC:2.5.1.63|MetaCyc:2.5.1.63-RXN molecular_function owl:Class GO:0002131 biolink:NamedThing wobble position cytosine ribose methylation The process in which the ribose of cytidine at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the 2'-O position. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010910 biolink:NamedThing positive regulation of heparan sulfate proteoglycan biosynthesis by positive regulation of epimerase activity Any process that increases the rate, frequency or extent of heparan sulfate proteoglycan biosynthesis by an increase in epimerase activity. This epimerase activity catalyzes the reaction that converts D-glucuronate into its diastereoisomer in heparan sulfate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061331 biolink:NamedThing epithelial cell proliferation involved in Malpighian tubule morphogenesis The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population and contributing to the shaping of a Malpighian tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T02:01:02Z biological_process owl:Class GO:0102209 biolink:NamedThing trans-permethrin hydrolase activity Catalysis of the reaction: (-)-trans-permethrin + H2O <=> H+ + (3-phenoxyphenyl)methanol + (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylate. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.88|RHEA:30283|MetaCyc:RXN-12167 molecular_function owl:Class GO:0070172 biolink:NamedThing positive regulation of tooth mineralization Any process that activates or increases the frequency, rate or extent of tooth mineralization, the deposition of calcium salts in tooth structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097134 biolink:NamedThing cyclin E1-CDK2 complex A protein complex consisting of cyclin E1 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:58:42Z cellular_component owl:Class GO:0046102 biolink:NamedThing inosine metabolic process The chemical reactions and pathways involving inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs. tmpzr1t_l9r_go_relaxed.owl inosine metabolism biological_process owl:Class GO:0097453 biolink:NamedThing mesaxon Portion of the ensheathing process (either myelin or non-myelin) where the enveloping lips of the ensheathing cell come together so that their apposed plasma membranes run parallel to each other, separated by a cleft 12 nm wide. tmpzr1t_l9r_go_relaxed.owl mesaxon of Schwann cell NIF_Subcellular:sao2127666702 pr 2012-12-19T12:59:13Z cellular_component owl:Class GO:0061836 biolink:NamedThing intranuclear rod A macromolecular fiber consisting of actin and cofilin that is formed in the nucleus as a consequence of chemical or mechanical stress conditions. tmpzr1t_l9r_go_relaxed.owl intranuclear actin rod cellular_component owl:Class GO:0043862 biolink:NamedThing arginine:agmatine antiporter activity Catalysis of the reaction: arginine(out) + agmatine(in) = arginine(in) + agmatine(out). tmpzr1t_l9r_go_relaxed.owl arginine-agmatine exchange transporter activity|arginine/agmatine antiporter activity|arginine-agmatine antiporter activity|AdiC molecular_function owl:Class GO:0070805 biolink:NamedThing regulation of phialide development Any process that modulates the frequency, rate or extent of phialide development, a process that leads to the formation of phialides. Phialides are specialized cells that bud from the ends of metulae on the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:45:03Z biological_process owl:Class GO:0046217 biolink:NamedThing indole phytoalexin metabolic process The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response. tmpzr1t_l9r_go_relaxed.owl indole phytoalexin metabolism biological_process owl:Class GO:0035945 biolink:NamedThing mitochondrial ncRNA surveillance The set of processes involved in identifying and degrading defective or aberrant non-coding RNA transcripts (ncRNAs) within the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial non-coding RNA surveillance|mitochondrial aberrant ncRNA catabolic process|mitochondrial ncRNA quality control bf 2011-07-28T10:34:59Z biological_process owl:Class GO:0016268 biolink:NamedThing O-glycan processing, core 2 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061445 biolink:NamedThing endocardial cushion cell fate commitment The commitment of a cell to an endocardial cushion cell fate and its capacity to differentiate into an endocardial cushion cell. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T09:11:03Z biological_process owl:Class GO:0061094 biolink:NamedThing regulation of turning behavior involved in mating Any process that modulates the rate, frequency or extent of turning behavior involved in mating. Turning behavior is the sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T02:12:24Z biological_process owl:Class GO:0019108 biolink:NamedThing aryl-aldehyde dehydrogenase (NAD) activity Catalysis of the reaction: an aromatic aldehyde + NAD+ + H2O = an aromatic acid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl aryl-aldehyde:NAD+ oxidoreductase activity RHEA:11804|UM-BBD_reactionID:r0394|MetaCyc:ARYL-ALDEHYDE-DEHYDROGENASE-RXN|EC:1.2.1.29 molecular_function owl:Class GO:0097321 biolink:NamedThing cell growth mode switching, filamentous to budding The process in which a cell switches from growing as a filament (elongated cells attached end-to-end) to growing as a round budding cell. An example of this is observed in Candida albicans. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-05T11:28:06Z biological_process owl:Class GO:0036091 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl bf 2012-01-10T02:54:43Z biological_process owl:Class GO:0036390 biolink:NamedThing pre-replicative complex assembly involved in bacterial-type DNA replication The aggregation, arrangement and bonding together of a set of components to form the bacterial pre-replicative complex, a protein-DNA complex that forms at the bacterial oriC during the initial step of DNA replication and allows the origin to become competent, or 'licensed', for replication. tmpzr1t_l9r_go_relaxed.owl bacterial pre-RC assembly|bacterial pre-replicative complex assembly bf 2013-06-05T16:45:21Z biological_process owl:Class GO:0097127 biolink:NamedThing cyclin B3-CDK2 complex A protein complex consisting of cyclin B3 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:47:16Z cellular_component owl:Class GO:1904547 biolink:NamedThing regulation of cellular response to glucose starvation Any process that modulates the frequency, rate or extent of cellular response to glucose starvation. tmpzr1t_l9r_go_relaxed.owl al 2015-08-12T09:57:52Z biological_process owl:Class GO:1990473 biolink:NamedThing ciliary targeting signal binding Binding to a ciliary targeting sequence, a specific peptide sequence that acts as a signal to localize a membrane protein to the ciliary membrane. tmpzr1t_l9r_go_relaxed.owl CTS binding pr 2014-09-02T08:22:03Z molecular_function owl:Class GO:0048722 biolink:NamedThing anterior cibarial plate development The process whose specific outcome is the progression of the anterior cibarial plate over time, from their formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046207 biolink:NamedThing trypanothione catabolic process The chemical reactions and pathways resulting in the breakdown of trypanothione (N1,N6,-bis(glutathionyl)spermidine), an essential redox intermediate in intracellular thiol redox regulation which also plays a role in protecting against oxidative stress. tmpzr1t_l9r_go_relaxed.owl trypanothione breakdown|trypanothione degradation|trypanothione catabolism biological_process owl:Class GO:0046206 biolink:NamedThing trypanothione metabolic process The chemical reactions and pathways involving trypanothione (N1,N6,-bis(glutathionyl)spermidine), an essential redox intermediate in intracellular thiol redox regulation which also plays a role in protecting against oxidative stress. tmpzr1t_l9r_go_relaxed.owl trypanothione metabolism biological_process owl:Class GO:1900443 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to biotic stimulus. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:56:18Z biological_process owl:Class GO:1903009 biolink:NamedThing proteasome complex disassembly The disaggregation of a proteasome complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl 26S proteasome disassembly|proteasome degradation|proteasome disassembly jl 2014-05-13T12:41:59Z biological_process owl:Class GO:0052855 biolink:NamedThing ADP-dependent NAD(P)H-hydrate dehydratase activity Catalysis of the reaction: (6S)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine dinucleotide + ADP = AMP + 3 H(+) + NADH + phosphate. tmpzr1t_l9r_go_relaxed.owl (6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase(ADP-hydrolysing; NADH-forming)|(6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase (ADP-hydrolysing)|ADP-dependent H4NAD(P)OH dehydratase activity|ADP-dependent H(4)NAD(P)OH dehydratase activity|reduced nicotinamide adenine dinucleotide hydrate dehydratase activity EC:4.2.1.136 molecular_function owl:Class GO:0031983 biolink:NamedThing vesicle lumen The volume enclosed by the membrane or protein that forms a vesicle. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao797538226 cellular_component owl:Class GO:0106261 biolink:NamedThing tRNA uridine(34) acetyltransferase activity Catalysis of the reaction: acetyl-CoA + H2O + S-adenosyl-L-methionine + uridine(34) in tRNA = 5'-deoxyadenosine + carboxymethyluridine(34) in tRNA + CoA + 2 H(+) + L-methionine. tmpzr1t_l9r_go_relaxed.owl RHEA:61020 hjd 2020-05-08T15:21:51Z molecular_function owl:Class GO:0090378 biolink:NamedThing seed trichome elongation The process in which a seed trichome irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. tmpzr1t_l9r_go_relaxed.owl The increase in length of the seed trichome without cell division. Elongation is defined to be from 5 to 20 DPA in Gossypium spp. tb 2010-09-15T02:20:47Z biological_process owl:Class GO:1905430 biolink:NamedThing cellular response to glycine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to glycin|cellular response to aminoacetic acid|cellular response to aminoethanoic acid|cellular response to Gly sl 2016-09-08T22:09:23Z biological_process owl:Class GO:1905429 biolink:NamedThing response to glycine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycine stimulus. tmpzr1t_l9r_go_relaxed.owl response to Gly|response to glycin|response to aminoacetic acid|response to aminoethanoic acid sl 2016-09-08T22:09:15Z biological_process owl:Class GO:0110015 biolink:NamedThing positive regulation of elastin catabolic process Any process that activates or increases the frequency, rate or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin. tmpzr1t_l9r_go_relaxed.owl kmv 2017-05-10T14:54:12Z biological_process owl:Class GO:0090431 biolink:NamedThing alkyl caffeate ester biosynthetic process The chemical reactions and pathways resulting in the formation of ester derivatives of alkyl caffeate. tmpzr1t_l9r_go_relaxed.owl alkyl caffeate ester anabolism|alkyl caffeate ester synthesis|alkyl caffeate ester formation|alkyl caffeate ester biosynthesis tb 2012-07-25T11:12:09Z biological_process owl:Class GO:1990705 biolink:NamedThing cholangiocyte proliferation The multiplication or reproduction of cholangiocytes, resulting in the expansion of the cholangiocyte population. A cholangiocyte is an epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. tmpzr1t_l9r_go_relaxed.owl hepatoblast proliferation 2015-03-16T23:23:50Z biological_process owl:Class GO:0031650 biolink:NamedThing regulation of heat generation Any process that modulates the rate or extent of heat generation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102686 biolink:NamedThing UDP-glucose:trans-zeatin 9-N-glucosyltransferase Catalysis of the reaction: UDP-alpha-D-glucose(2-) + trans-zeatin <=> H+ + 9-(alpha-D-glucosyl)-trans-zeatin + UDP(3-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4722 molecular_function owl:Class GO:0097594 biolink:NamedThing ventral disc dorsal microribbon Trilaminar structure extending perpendicularly into the cytoplasm along the length of ventral disc microtubules in Giardia species (trophozoite stage). Constituents of dorsal microribbons (also called dorsal ribbons or microribbons) include alpha-coiled-helix proteins approximately 29 to 38 kDa in size. These proteins line the edges of the microribbons but are not found in microtubules. Tubulins are not found in microribbons. tmpzr1t_l9r_go_relaxed.owl dorsal microribbon|dorsal ribbon|ventral disk dorsal microribbon|microribbon Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:20:06Z cellular_component owl:Class GO:0002678 biolink:NamedThing positive regulation of chronic inflammatory response Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response. tmpzr1t_l9r_go_relaxed.owl up regulation of chronic inflammatory response|stimulation of chronic inflammatory response|upregulation of chronic inflammatory response|activation of chronic inflammatory response|up-regulation of chronic inflammatory response biological_process owl:Class GO:0006044 biolink:NamedThing N-acetylglucosamine metabolic process The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine metabolism biological_process owl:Class GO:1904535 biolink:NamedThing positive regulation of telomeric loop disassembly Any process that activates or increases the frequency, rate or extent of telomeric loop disassembly. tmpzr1t_l9r_go_relaxed.owl upregulation of telomeric loop disassembly|up-regulation of telomeric loop disassembly|activation of T loop disassembly|positive regulation of T loop disassembly|up regulation of T loop disassembly|up-regulation of T loop disassembly|up regulation of telomeric loop disassembly|upregulation of T loop disassembly|activation of telomeric loop disassembly nc 2015-07-31T17:15:10Z biological_process owl:Class GO:0060866 biolink:NamedThing leaf abscission The controlled shedding of a leaf. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T06:33:55Z biological_process owl:Class GO:0047562 biolink:NamedThing 3-hydroxyaspartate aldolase activity Catalysis of the reaction: (3R)-3-hydroxy-L-aspartate = glycine + glyoxylate. tmpzr1t_l9r_go_relaxed.owl erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase (glycine-forming)|erythro-3-hydroxy-L(s)-aspartate glyoxylate-lyase activity|erythro-beta-hydroxyaspartate glycine-lyase activity|erythro-beta-hydroxyaspartate aldolase activity|erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase activity MetaCyc:3-HYDROXYASPARTATE-ALDOLASE-RXN|RHEA:14377|KEGG_REACTION:R00478|EC:4.1.3.14 molecular_function owl:Class GO:0016629 biolink:NamedThing 12-oxophytodienoate reductase activity Catalysis of the reaction: 8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-en-1-yl}cyclopentyl]octanoate + NADP(+) = (15Z)-12-oxophyto-10,15-dienoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 12-oxo-phytodienoate reductase activity|12-oxo-phytodienoic acid reductase activity|8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate:NADP+ 4-oxidoreductase activity EC:1.3.1.42|MetaCyc:12-OXOPHYTODIENOATE-REDUCTASE-RXN|RHEA:21888|KEGG_REACTION:R03401 molecular_function owl:Class GO:1904101 biolink:NamedThing response to acadesine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acadesine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-03-30T22:36:26Z biological_process owl:Class GO:0033624 biolink:NamedThing negative regulation of integrin activation Any process that stops, prevents, or reduces the frequency, rate, or extent of integrin activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of integrin complex activation biological_process owl:Class GO:0034912 biolink:NamedThing phthalate 3,4-cis-dihydrodiol dehydrogenase activity Catalysis of the reaction: phthalate 3,4-cis-dihydrodiol + NAD+ = 3,4-dihydroxyphthalate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1445|MetaCyc:RXN5F9-56 molecular_function owl:Class GO:0046785 biolink:NamedThing microtubule polymerization The addition of tubulin heterodimers to one or both ends of a microtubule. tmpzr1t_l9r_go_relaxed.owl microtubule assembly|microtubule formation biological_process owl:Class GO:0060927 biolink:NamedThing cardiac pacemaker cell fate commitment The commitment of cells to pacemaker cell fates and their capacity to differentiate into pacemaker cells. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions. tmpzr1t_l9r_go_relaxed.owl pacemaker cell fate commitment dph 2009-09-29T11:54:22Z biological_process owl:Class GO:0051990 biolink:NamedThing (R)-2-hydroxyglutarate dehydrogenase activity Catalysis of the reaction: (R)-2-hydroxyglutarate + acceptor = 2-oxoglutarate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-2-hydroxyglutarate dehydrogenase activity Reactome:R-HSA-880053|RHEA:38295|Reactome:R-HSA-880007|EC:1.1.99.39 molecular_function owl:Class GO:0035606 biolink:NamedThing peptidyl-cysteine S-trans-nitrosylation Transfer of a nitric oxide (NO) group from one cysteine residue to another. tmpzr1t_l9r_go_relaxed.owl protein-to-protein transnitrosylation|S-transnitrosylation|cysteine to cysteine nitrosylation|cysteine-to-cysteine transnitrosylation bf 2010-11-16T09:54:46Z biological_process owl:Class GO:0050993 biolink:NamedThing dimethylallyl diphosphate metabolic process The chemical reactions and pathways involving dimethylallyl diphosphate. tmpzr1t_l9r_go_relaxed.owl dimethylallyl diphosphate metabolism|dimethylallyl pyrophosphate metabolism|DPP metabolism|dimethylallyl pyrophosphate metabolic process|DPP metabolic process biological_process owl:Class GO:1901907 biolink:NamedThing diadenosine pentaphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of diadenosine pentaphosphate. tmpzr1t_l9r_go_relaxed.owl diadenosyl pentaphosphate breakdown|diadenosine pentaphosphate catabolism|diadenosyl pentaphosphate degradation|diadenosyl pentaphosphate catabolic process|diadenosyl pentaphosphate catabolism al 2013-02-13T13:48:21Z biological_process owl:Class GO:1903497 biolink:NamedThing cellular response to 11-deoxycorticosterone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 11-deoxycorticosterone stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-09-25T17:01:43Z biological_process owl:Class GO:1901203 biolink:NamedThing positive regulation of extracellular matrix assembly Any process that activates or increases the frequency, rate or extent of extracellular matrix assembly. tmpzr1t_l9r_go_relaxed.owl activation of extracellular matrix assembly|up-regulation of extracellular matrix assembly|upregulation of extracellular matrix assembly|up regulation of extracellular matrix assembly rl 2012-07-27T04:04:32Z biological_process owl:Class GO:2001291 biolink:NamedThing codeine metabolic process The chemical reactions and pathways involving codeine, an alkaloid found in the opium poppy, Papaver somniferum var. album. Codeine has analgesic, anti-tussive and anti-diarrhoeal properties. tmpzr1t_l9r_go_relaxed.owl codeine metabolism pr 2012-02-14T01:10:03Z biological_process owl:Class GO:0032484 biolink:NamedThing Ral protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Ral family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005300 biolink:NamedThing high-affinity tryptophan transmembrane transporter activity Catalysis of the high-affinity transfer of L-tryptophan from one side of a membrane to the other. Tryptophan is 2-amino-3-(1H-indol-3-yl)propanoic acid. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity tryptophan transporter activity molecular_function owl:Class GO:0103015 biolink:NamedThing 4-amino-4-deoxy-L-arabinose transferase activity Catalysis of the reaction: (Kdo)2-lipid A + 2 4-amino-4-deoxy-alpha-L-arabinopyranosyl di-trans,poly-cis-undecaprenyl phosphate = (beta-L-Ara4N)2-(KDO)2-lipid A + 2 ditrans,polycis-undecaprenyl phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-2001|EC:2.4.2.43|RHEA:35371 molecular_function owl:Class GO:0004438 biolink:NamedThing phosphatidylinositol-3-phosphatase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3-phosphate + H2O = 1-phosphatidyl-1D-myo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol-3-phosphate 3-phosphohydrolase activity|inositol-1,3-bisphosphate 3-phosphatase activity|inositol 1,3-bisphosphate phosphatase activity|inositol-1,4,-bisphosphate 3-phosphatase activity|phosphatidyl-3-phosphate 3-phosphohydrolase activity|D-myo-inositol-1,3-bisphosphate 3-phosphohydrolase activity|inositol-polyphosphate 3-phosphatase activity Reactome:R-HSA-1675795|RHEA:12316|Reactome:R-HSA-6809720|Reactome:R-HSA-6809975|Reactome:R-HSA-6809777|Reactome:R-HSA-1676114|EC:3.1.3.64|Reactome:R-HSA-1676141|MetaCyc:PHOSPHATIDYLINOSITOL-3-PHOSPHATASE-RXN|Reactome:R-HSA-1675994|Reactome:R-HSA-6809325 Note that this function includes EC:3.1.3.65. GO:0016315 molecular_function owl:Class GO:0052744 biolink:NamedThing phosphatidylinositol monophosphate phosphatase activity Catalysis of the reaction: phosphatidylinositol monophosphate + H2O = phosphatidylinositol + phosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-14T01:36:39Z molecular_function owl:Class GO:0021951 biolink:NamedThing chemoattraction involved in precerebellar neuron migration The creation and reception of signals that guide a precerebellar neuron towards their signals, where this process is involved in tangential migration. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis involved in precerebellar neuron migration biological_process owl:Class GO:0102644 biolink:NamedThing monocyclic sesterterpenediol synthase activity Catalysis of the reaction: monocyclic sesterterpenediol <=> all-trans-geranylfarnesol + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15756 molecular_function owl:Class GO:1905895 biolink:NamedThing negative regulation of cellular response to tunicamycin Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to tunicamycin. tmpzr1t_l9r_go_relaxed.owl downregulation of cellular response to tunicamycin|down regulation of cellular response to tunicamycin|inhibition of cellular response to tunicamycin|down-regulation of cellular response to tunicamycin bc 2017-02-01T11:36:42Z biological_process owl:Class GO:0072582 biolink:NamedThing 17-beta-hydroxysteroid dehydrogenase (NADP+) activity Catalysis of the reaction: a 17-beta-hydroxysteroid + NADP+ = a 17-oxosteroid + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:24616 mah 2011-02-07T01:54:21Z molecular_function owl:Class GO:0051839 biolink:NamedThing regulation by host of cytolysis of symbiont cells Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036346 biolink:NamedThing cellular response to L-cysteine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-cysteine stimulus. L-cysteine is an optically active form of cysteine having L-configuration. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-18T14:21:54Z biological_process owl:Class GO:1901367 biolink:NamedThing response to L-cysteine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-cysteine stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-18T13:49:42Z biological_process owl:Class GO:0033696 biolink:NamedThing heterochromatin boundary formation A process that forms a boundary that limits the spreading of heterochromatin along a chromosome. tmpzr1t_l9r_go_relaxed.owl regulation of extent of heterochromatin formation|regulation of heterochromatin spreading|negative regulation of extent of heterochromatin formation|negative regulation of extent of heterochromatin assembly|negative regulation of heterochromatin spreading|maintenance of heterochromatin boundaries|regulation of extent of heterochromatin assembly https://github.com/geneontology/go-ontology/issues/22028 GO:0031454 biological_process owl:Class GO:1903777 biolink:NamedThing melibiose binding Binding to melibiose. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-06T21:05:29Z molecular_function owl:Class GO:0061751 biolink:NamedThing neutral sphingomyelin phosphodiesterase activity Catalysis of the reaction: H(2)O + sphingomyelin = ceramide + choline phosphate + H(+) in a neutral environment. tmpzr1t_l9r_go_relaxed.owl neutral SMase|neutral sphingomyelinase dph 2015-11-11T14:48:08Z molecular_function owl:Class GO:0018078 biolink:NamedThing peptidyl-thyronine iodination The iodination of peptidyl-thyronine, formed from tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0178|RESID:AA0177 biological_process owl:Class GO:0050243 biolink:NamedThing pyruvate dehydrogenase (NADP+) activity Catalysis of the reaction: CoA + NADP(+) + pyruvate = acetyl-CoA + CO(2) + NADPH. tmpzr1t_l9r_go_relaxed.owl pyruvate:NADP+ oxidoreductase activity|pyruvate:NADP+ 2-oxidoreductase (CoA-acetylating)|pyruvate:NADP(+) oxidoreductase activity EC:1.2.1.51|RHEA:17425|MetaCyc:PYRUVATE-DEHYDROGENASE-NADP%2b-RXN|KEGG_REACTION:R00210 molecular_function owl:Class GO:0046373 biolink:NamedThing L-arabinose metabolic process The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. tmpzr1t_l9r_go_relaxed.owl L-arabinose metabolism biological_process owl:Class GO:0050532 biolink:NamedThing 2-phosphosulfolactate phosphatase activity Catalysis of the reaction: (2R)-O-phospho-3-sulfolactate + H(2)O = (R)-3-sulfolactate + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-phosphosulpholactate phosphatase activity|(R)-2-phospho-3-sulfolactate phosphohydrolase activity|(2R)-phosphosulfolactate phosphohydrolase activity|ComB phosphatase activity RHEA:23416|MetaCyc:R229-RXN|EC:3.1.3.71|KEGG_REACTION:R05789 molecular_function owl:Class GO:0006788 biolink:NamedThing heme oxidation The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme. tmpzr1t_l9r_go_relaxed.owl haem oxidation biological_process owl:Class GO:0035040 biolink:NamedThing sperm nuclear envelope removal Removal of the sperm nuclear envelope, allowing entry of maternal factors into the sperm nucleus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000262 biolink:NamedThing positive regulation of blood coagulation, common pathway Any process that activates or increases the frequency, rate or extent of blood coagulation, common pathway. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-23T11:42:48Z biological_process owl:Class GO:0070398 biolink:NamedThing wall teichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of wall teichoic acid, which is a major component of the cell wall of Gram-positive bacteria and typically consists of a polymer of glycerol-phosphate or ribitol-phosphate to which are attached glycosyl and D-alanyl ester residues and which is covalently linked to peptidoglycan. tmpzr1t_l9r_go_relaxed.owl wall teichoic acid biosynthesis|wall teichoic acid synthesis|WTA biosynthetic process|wall teichoic acid anabolism|wall teichoic acid formation biological_process owl:Class GO:0002134 biolink:NamedThing UTP binding Binding to UTP, uridine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032557 biolink:NamedThing pyrimidine ribonucleotide binding Binding to a pyrimidine ribonucleotide, any compound consisting of a pyrimidine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005958 biolink:NamedThing DNA-dependent protein kinase-DNA ligase 4 complex A large protein complex which is involved in the repair of DNA double-strand breaks and, in mammals, V(D)J recombination events. It consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer Ku, the nuclear phosphoprotein XRCC4 or a homolog thereof, and DNA ligase IV. tmpzr1t_l9r_go_relaxed.owl GO:0005959 cellular_component owl:Class GO:0044315 biolink:NamedThing protein secretion by the type VII secretion system The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type VII protein secretion system. tmpzr1t_l9r_go_relaxed.owl jl 2010-06-02T11:57:05Z biological_process owl:Class GO:0102968 biolink:NamedThing 10-hydroxygeranial oxidoreductase activity Catalysis of the reaction: (6E)-8-hydroxygeranial + NADP <=> (6E)-8-oxogeranial + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:32611|MetaCyc:RXN-9369 molecular_function owl:Class GO:0098870 biolink:NamedThing action potential propagation The propagation of an action potential along the plane of an excitable membrane. Action potentials typically propagate once triggered because the depolarization of adjacent membrane regions due to an action potential crosses the firing threshold. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006017 biolink:NamedThing deoxyribose 1,5-bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyribose 1,5-bisphosphate, the diphosphorylated sugar 1,5-diphospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyribose 1,5-bisphosphate anabolism|deoxyribose 1,5-bisphosphate biosynthesis|deoxyribose 1,5-bisphosphate formation|deoxyribose 1,5-bisphosphate synthesis biological_process owl:Class GO:0033314 biolink:NamedThing mitotic DNA replication checkpoint signaling A signal transduction process that contributes to a mitotic DNA replication checkpoint. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in S-M checkpoint|mitotic DNA replication checkpoint|signal transduction involved in mitotic DNA replication checkpoint|mitotic cell cycle DNA replication checkpoint|S-M DNA replication checkpoint|S-phase checkpoint|S-M checkpoint|signal transduction involved in mitotic G2/M transition decatenation checkpoint GO:0072459|GO:0031574|GO:0072443|GO:0072446 biological_process owl:Class GO:0050241 biolink:NamedThing pyrroline-2-carboxylate reductase activity Catalysis of the reaction: L-proline + NAD(P)+ = 1-pyrroline-2-carboxylate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl delta1-pyrroline-2-carboxylate reductase activity|L-proline:NAD(P)+ 2-oxidoreductase activity MetaCyc:PYRROLINE-2-CARBOXYLATE-REDUCTASE-RXN|EC:1.5.1.1 molecular_function owl:Class GO:0098653 biolink:NamedThing centromere clustering The process by which centromeres/kinetochores become localized to clusters. tmpzr1t_l9r_go_relaxed.owl kinetochore clustering As inner kinetochores are an integral part of centromeres, we treat centromere and kinetochore clustering as the same process. dos 2014-05-23T19:03:37Z GO:0098587 biological_process owl:Class GO:0006718 biolink:NamedThing juvenile hormone biosynthetic process The chemical reactions and pathways resulting in the formation of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. tmpzr1t_l9r_go_relaxed.owl juvenile hormone anabolism|juvenile hormone formation|juvenile hormone biosynthesis|juvenile hormone synthesis biological_process owl:Class GO:0000458 biolink:NamedThing endonucleolytic cleavage between LSU-rRNA and 5S rRNA of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S) Endonucleolytic cleavage to separate a pre-LSU-rRNA from a pre-5S rRNA originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the Large Subunit (LSU) rRNA, and the 5S rRNA, in that order, from 5' to 3' along the primary transcript. Note that the use of the word tricistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060578 biolink:NamedThing superior vena cava morphogenesis The process in which the anatomical structure of superior vena cava generated and organized. The superior vena cava is a blood vessel that transports blood from the upper body to the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-06T08:47:21Z biological_process owl:Class GO:0030579 biolink:NamedThing ubiquitin-dependent SMAD protein catabolic process The chemical reactions and pathways resulting in the breakdown of SMAD signaling proteins by ubiquitination and targeting to the proteasome. tmpzr1t_l9r_go_relaxed.owl ubiquitin-dependent SMAD protein catabolism|ubiquitin-dependent SMAD protein degradation|ubiquitin-dependent SMAD protein breakdown biological_process owl:Class GO:0030259 biolink:NamedThing lipid glycosylation Covalent attachment of a glycosyl residue to a lipid molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007116 biolink:NamedThing regulation of cell budding Any process that modulates the frequency, rate or extent of the formation and growth of cell buds. tmpzr1t_l9r_go_relaxed.owl regulation of budding biological_process owl:Class GO:0005798 biolink:NamedThing Golgi-associated vesicle Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell. tmpzr1t_l9r_go_relaxed.owl vesicular component|Golgi vesicle NIF_Subcellular:sao819927218 Note that this definition includes vesicles that are transiently associated with the Golgi. cellular_component owl:Class GO:0070506 biolink:NamedThing high-density lipoprotein particle receptor activity Combining with a high-density lipoprotein particle and delivering the high-density lipoprotein into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl high-density lipoprotein receptor activity|HDL receptor molecular_function owl:Class GO:0014815 biolink:NamedThing initiation of skeletal muscle satellite cell activation by growth factor signaling, involved in skeletal muscle regeneration Signalling between growth factors and their receptors that results in the activation of satellite cell, where this process is involved in skeletal muscle regeneration. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fiber, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006256 biolink:NamedThing UDP catabolic process The chemical reactions and pathways resulting in the breakdown of UDP, uridine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP catabolism|UDP degradation|UDP breakdown biological_process owl:Class GO:0051114 biolink:NamedThing peptidyl-histidine uridylylation The uridylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine) or peptidyl-3'-(phospho-5'-uridine)-L-histidine (otherwise known as pi-UMP-histidine, pros-UMP-histidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0372 biological_process owl:Class GO:0071622 biolink:NamedThing regulation of granulocyte chemotaxis Any process that modulates the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T04:09:24Z biological_process owl:Class GO:0051901 biolink:NamedThing positive regulation of mitochondrial depolarization Any process that activates, maintains or increases the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive. tmpzr1t_l9r_go_relaxed.owl upregulation of mitochondrial depolarization|up regulation of mitochondrial depolarization|up-regulation of mitochondrial depolarization|stimulation of mitochondrial depolarization|activation of mitochondrial depolarization biological_process owl:Class GO:0044591 biolink:NamedThing response to amylopectin A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of amylopectin stimulus. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-26T03:20:03Z biological_process owl:Class GO:0047358 biolink:NamedThing UDP-glucose-glycoprotein glucose phosphotransferase activity Catalysis of the reaction: glycoprotein D-mannose + UDP-D-glucose = glycoprotein 6-(D-glucose-1-phospho)-D-mannose + UMP. tmpzr1t_l9r_go_relaxed.owl GlcPTase activity|UDPglucose-glycoprotein glucose phosphotransferase activity|UDPglucose:glycoprotein-D-mannose glucosephosphotransferase activity|UDP-glucose:glycoprotein-D-mannose glucosephosphotransferase activity|Glc-phosphotransferase activity|UDP-glucose:glycoprotein glucose-1-phosphotransferase activity|uridine diphosphoglucose-glycoprotein glucose-1-phosphotransferase activity RHEA:20181|MetaCyc:2.7.8.19-RXN|EC:2.7.8.19 molecular_function owl:Class GO:1901323 biolink:NamedThing response to erythromycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an erythromycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-30T10:09:59Z biological_process owl:Class GO:0070238 biolink:NamedThing activated T cell autonomous cell death A T cell apoptotic process that occurs towards the end of the expansion phase following the initial activation of mature T cells by antigen via the accumulation of pro-apoptotic gene products and decrease in anti-apoptotic gene products. tmpzr1t_l9r_go_relaxed.owl activated T cell apoptosis|ACAD|activated T-lymphocyte autonomous cell death|activated cell autonomous cell death|activated T lymphocyte autonomous cell death|activated T-cell autonomous cell death biological_process owl:Class GO:0080100 biolink:NamedThing L-glutamine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-glutamine + 2-oxoglutarate = 2-oxoglutaramate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-glutamine:alpha-ketoglutarate aminotransferase activity EC:2.6.1.50 This reaction falls within the larger set of reactions associated with EC:2.6.1.50 (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.50). dhl 2009-04-23T03:56:16Z molecular_function owl:Class GO:1902059 biolink:NamedThing negative regulation of sporocarp development involved in sexual reproduction Any process that stops, prevents or reduces the frequency, rate or extent of sporocarp development involved in sexual reproduction. tmpzr1t_l9r_go_relaxed.owl downregulation of fruiting body development involved in sexual reproduction|downregulation of ascus development|negative regulation of fruiting body formation involved in sexual reproduction|down regulation of sporocarp development involved in sexual reproduction|inhibition of perfect stage fruiting body development|down-regulation of ascus development|down-regulation of fruiting body formation involved in sexual reproduction|downregulation of fruiting body formation involved in sexual reproduction|down regulation of fruiting body development involved in sexual reproduction|inhibition of fruiting body development involved in sexual reproduction|inhibition of fruiting body formation involved in sexual reproduction|downregulation of perfect stage fruiting body development|down regulation of perfect stage fruiting body development|downregulation of sporocarp development involved in sexual reproduction|inhibition of ascus development|down regulation of ascus development|down-regulation of perfect stage fruiting body development|down-regulation of sporocarp development involved in sexual reproduction|negative regulation of ascus development|down-regulation of fruiting body development involved in sexual reproduction|down regulation of fruiting body formation involved in sexual reproduction|negative regulation of perfect stage fruiting body development|inhibition of sporocarp development involved in sexual reproduction|negative regulation of fruiting body development involved in sexual reproduction di 2013-04-16T04:08:42Z biological_process owl:Class GO:2000111 biolink:NamedThing positive regulation of macrophage apoptotic process Any process that activates or increases the frequency, rate or extent of macrophage apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of activation-induced cell death|positive regulation of AICD|positive regulation of macrophage apoptosis mah 2010-09-15T01:44:21Z biological_process owl:Class GO:0003911 biolink:NamedThing DNA ligase (NAD+) activity Catalysis of the reaction: NAD+ + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + nicotinamide nucleotide + deoxyribonucleotide(n+m). tmpzr1t_l9r_go_relaxed.owl polynucleotide synthetase (nicotinamide adenine dinucleotide)|polydeoxyribonucleotide synthase (NAD)|deoxyribonucleic acid joinase|polydeoxyribonucleotide synthase (NAD+) activity|polynucleotide ligase (NAD(+)) activity|deoxyribonucleic acid ligase|DNA ligase (NAD)|DNA-joining enzyme|deoxyribonucleic ligase|polynucleotide ligase (NAD+) activity|deoxyribonucleic joinase|Polydeoxyribonucleotide synthase (NAD(+)) activity|polynucleotide ligase (nicotinamide adenine dinucleotide)|deoxyribonucleate ligase|polynucleotide ligase|deoxyribonucleic repair enzyme|DNA joinase activity|DNA repair enzyme activity|polynucleotide ligase (NAD)|polynucleotide synthetase activity|deoxyribonucleic-joining enzyme|poly(deoxyribonucleotide):poly(deoxyribonucleotide) ligase (AMP-forming, NMN-forming) MetaCyc:DNA-LIGASE-NAD+-RXN|EC:6.5.1.2 molecular_function owl:Class GO:0098961 biolink:NamedThing dendritic transport of ribonucleoprotein complex The directed movement of a ribonucleoprotein complex along microtubules in nerve cell dendrites. tmpzr1t_l9r_go_relaxed.owl dendritic transport of RNP complex biological_process owl:Class GO:0044178 biolink:NamedThing host cell Golgi membrane The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl host Golgi membrane jl 2009-09-04T03:16:14Z cellular_component owl:Class GO:0051694 biolink:NamedThing pointed-end actin filament capping The binding of a protein or protein complex to the pointed (or minus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl pointed-end F-actin capping activity|minus-end F-actin capping activity|pointed-end actin capping activity|minus-end actin filament capping activity biological_process owl:Class GO:0051693 biolink:NamedThing actin filament capping The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl actin capping activity|F-actin capping activity biological_process owl:Class GO:0043207 biolink:NamedThing response to external biotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018811 biolink:NamedThing cyclohex-1-ene-1-carboxyl-CoA hydratase activity Catalysis of the reaction: cyclohex-1-ene-1-carboxyl-CoA + H2O = 2-hydroxycyclohexane-1-carboxyl-CoA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R266-RXN|UM-BBD_reactionID:r0191 molecular_function owl:Class GO:0032791 biolink:NamedThing lead ion binding Binding to lead (Pb) ions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005965 biolink:NamedThing protein farnesyltransferase complex A protein complex that possesses protein farnesyltransferase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005828 biolink:NamedThing kinetochore microtubule Any of the spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic or meiotic chromosome segregation. tmpzr1t_l9r_go_relaxed.owl pole-to-kinetochore microtubule cellular_component owl:Class GO:0035070 biolink:NamedThing salivary gland histolysis The stage-specific break down of the larval salivary glands during Drosophila metamorphosis, to allow replacement of larval structures by tissues and structures that form the adult fly. tmpzr1t_l9r_go_relaxed.owl salivary gland regression biological_process owl:Class GO:0110090 biolink:NamedThing positive regulation of hippocampal neuron apoptotic process Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process in hippocampal neurons. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-13T21:22:18Z biological_process owl:Class GO:0030117 biolink:NamedThing membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045812 biolink:NamedThing negative regulation of Wnt signaling pathway, calcium modulating pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC). tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signaling pathway, calcium modulating pathway|down-regulation of frizzled-2 signaling pathway|downregulation of frizzled-2 signaling pathway|negative regulation of Wnt-activated signaling pathway, calcium modulating pathway|inhibition of frizzled-2 signaling pathway|down regulation of frizzled-2 signaling pathway|negative regulation of frizzled-2 signalling pathway|negative regulation of frizzled-2 signaling pathway biological_process owl:Class GO:0031156 biolink:NamedThing regulation of sorocarp development Any process that modulates the frequency, rate or extent of sorocarp development. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl regulation of fruiting body formation|regulation of fruiting body development biological_process owl:Class GO:0050092 biolink:NamedThing meso-tartrate dehydrogenase activity Catalysis of the reaction: (2R,3S)-tartrate + NAD(+) = dihydroxyfumarate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl meso-tartrate:NAD+ oxidoreductase activity EC:1.3.1.7|RHEA:18553|KEGG_REACTION:R02544|MetaCyc:MESO-TARTRATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0000311 biolink:NamedThing plastid large ribosomal subunit The larger of the two subunits of a plastid ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001094 biolink:NamedThing TFIID-class transcription factor complex binding Binding to a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl TFIID-class transcription factor binding krc 2010-10-28T02:48:33Z molecular_function owl:Class GO:0033192 biolink:NamedThing calmodulin-dependent protein phosphatase activity Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate, dependent on the presence of calcium-bound calmodulin. tmpzr1t_l9r_go_relaxed.owl calcineurin activity|calcium/calmodulin-dependent protein phosphatase activity|Ca2+/CaM-dependent protein phosphatase activity|calcium- and calmodulin-dependent protein phosphatase activity Reactome:R-HSA-4551451|Reactome:R-HSA-2730849 molecular_function owl:Class GO:0004723 biolink:NamedThing calcium-dependent protein serine/threonine phosphatase activity Catalysis of the reactions: protein serine phosphate + H2O = protein serine + phosphate; and protein threonine phosphate + H2O = protein threonine + phosphate. These reactions require the presence of calcium ions. tmpzr1t_l9r_go_relaxed.owl calcium-dependent protein serine/threonine phosphatase, intrinsic catalyst activity|calcineurin Reactome:R-HSA-2025882 GO:0008596 molecular_function owl:Class GO:0106144 biolink:NamedThing fraxetin 5-hydroxylase activity Catalyzes the reaction fraxetin+ NAD(P)H + 02= sideretin + NAD(P)(+) + H20. tmpzr1t_l9r_go_relaxed.owl RHEA:57844|EC:1.14.14.164 hjd 2018-09-07T18:24:41Z molecular_function owl:Class GO:0099636 biolink:NamedThing cytoplasmic streaming The directed flow of cytosol (the liquid component of the cytoplasm) and the organelles it contains. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cytoplasmic_streaming biological_process owl:Class GO:0004964 biolink:NamedThing luteinizing hormone receptor activity Combining with luteinizing hormone (also called lutropin) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl LH receptor|LHR|lutropin-choriogonadotropic hormone receptor|lutropin receptor GO:0004976 molecular_function owl:Class GO:0003336 biolink:NamedThing corneocyte desquamation The delamination process that results in the shedding of a corneocyte from the surface of the epidermis. tmpzr1t_l9r_go_relaxed.owl epidermal desquamation dph 2009-11-24T09:11:53Z biological_process owl:Class GO:0015444 biolink:NamedThing P-type magnesium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mg2+(out) -> ADP + phosphate + Mg2+(in). tmpzr1t_l9r_go_relaxed.owl magnesium importing ATPase activity|ATP phosphohydrolase (Mg2+-importing)|Mg(2+)-importing ATPase activity|magnesium transmembrane transporter activity, phosphorylative mechanism|magnesium-translocating P-type ATPase activity|Mg2+-importing ATPase activity MetaCyc:3.6.3.2-RXN|RHEA:10260|EC:7.2.2.14 molecular_function owl:Class GO:0050097 biolink:NamedThing methylaspartate mutase activity Catalysis of the reaction: threo-3-methyl-L-aspartate = L-glutamate. tmpzr1t_l9r_go_relaxed.owl methylaspartic acid mutase activity|glutamate isomerase activity|glutamic mutase activity|glutamic isomerase activity|glutamate mutase activity|glutamic acid mutase activity|L-threo-3-methylaspartate carboxy-aminomethylmutase activity|beta-methylaspartate-glutamate mutase activity|b-methylaspartate-glutamate mutase activity|glutamic acid isomerase activity MetaCyc:METHYLASPARTATE-MUTASE-RXN|RHEA:12857|EC:5.4.99.1|KEGG_REACTION:R00262 molecular_function owl:Class GO:0010549 biolink:NamedThing regulation of membrane disassembly Any process that modulates the frequency, rate or extent of membrane disassembly. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019616 biolink:NamedThing catechol catabolic process, meta-cleavage The chemical reactions and pathways resulting in the breakdown of catechol via the meta-cleavage pathway, in which the catechol aromatic ring is broken between a hydroxylated carbon atom and an adjacent unsubstituted carbon atom. tmpzr1t_l9r_go_relaxed.owl catechol breakdown, meta-cleavage|catechol degradation, meta-cleavage MetaCyc:P183-PWY biological_process owl:Class GO:0019227 biolink:NamedThing neuronal action potential propagation The propagation of an action potential along an axon, away from the soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990171 biolink:NamedThing SCF complex disassembly in response to cadmium stress The disaggregation of the SCF ubiquitin ligase complex in response to cadmium stress. tmpzr1t_l9r_go_relaxed.owl rb 2013-08-15T22:38:06Z biological_process owl:Class GO:0044569 biolink:NamedThing [Ni-Fe] hydrogenase complex A microbial enzyme complex which contains nickel and iron in its active site. In Acetomicrobium flavidum it is an alpha 2 beta 2 tetramer. tmpzr1t_l9r_go_relaxed.owl nickel-iron hydrogenase complex|Ni-Fe hydrogenase complex jl 2012-04-18T01:26:35Z cellular_component owl:Class GO:2000974 biolink:NamedThing negative regulation of pro-B cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of pro-B cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of pro-B cell development|negative regulation of pro-B lymphocyte differentiation yaf 2011-08-02T03:05:50Z biological_process owl:Class GO:0060985 biolink:NamedThing epicardium-derived cardiac vascular smooth muscle cell fate commitment The commitment of an epicardial cell to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T03:11:11Z biological_process owl:Class GO:0070796 biolink:NamedThing regulation of cleistothecium development Any process that modulates the frequency, rate or extent of cleistothecium development, a process that leads to the formation of a cleistothecium. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T03:30:04Z biological_process owl:Class GO:0047404 biolink:NamedThing glucuronosyl-disulfoglucosamine glucuronidase activity Catalysis of the reaction: H2O + 3-D-glucuronosyl-N2-,6-disulfo-beta-D-glucosamine = glucuronate + N2,6-disulfo-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl 3-D-glucuronsyl-2-N,6-disulfo-beta-D-glucosamine glucuronohydrolase activity|glucuronosyl-disulphoglucosamine glucuronidase activity|3-D-glucuronsyl-N2,6-disulfo-beta-D-glucosamine glucuronohydrolase activity MetaCyc:3.2.1.56-RXN|RHEA:15073|EC:3.2.1.56 molecular_function owl:Class GO:0005637 biolink:NamedThing nuclear inner membrane The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl nucleus inner membrane|inner nuclear membrane|inner envelope NIF_Subcellular:sao1612527463 cellular_component owl:Class GO:0102174 biolink:NamedThing 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NADH + O2 <=> 4alpha-carboxy-4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11927|RHEA:58864 molecular_function owl:Class GO:0043880 biolink:NamedThing crotonyl-CoA reductase activity Catalysis of the reduction of crotonyl-CoA to butyryl-CoA. tmpzr1t_l9r_go_relaxed.owl crotonyl-coenzyme A reductase activity|CCR molecular_function owl:Class GO:0042784 biolink:NamedThing evasion of host immune response via regulation of host complement system Any mechanism of active immune avoidance which works by regulating the host complement system, e.g. by possessing complement receptors which mediate attachment to, then infection of, host macrophages, which are eventually destroyed. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active immune evasion via regulation of host complement system|active immune evasion via modulation of host complement system|active evasion of host immune response via regulation of host complement system|active evasion of immune response of other organism via regulation of complement system of other organism involved in symbiotic interaction GO:0051811 biological_process owl:Class GO:1901893 biolink:NamedThing positive regulation of cell septum assembly Any process that activates or increases the frequency, rate or extent of cell septum assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of cell septum assembly|upregulation of cell septum assembly|up-regulation of cell septum assembly|activation of cell septum assembly tb 2013-02-06T20:14:50Z biological_process owl:Class GO:1902284 biolink:NamedThing neuron projection extension involved in neuron projection guidance Any neuron projection extension that is involved in neuron projection guidance. tmpzr1t_l9r_go_relaxed.owl neuron projection extension involved in neuron protrusion guidance|neuron process extension involved in neuron process guidance|neuron process extension involved in neuron protrusion guidance|neuron process extension involved in neuron projection guidance|neuron process extension involved in neuronal cell projection guidance|neuron protrusion extension involved in neuron protrusion guidance|neuron projection extension involved in neuronal cell projection guidance|neurite extension involved in neuron projection guidance|neuronal cell projection extension involved in neuron protrusion guidance|neurite extension involved in neuronal cell projection guidance|neuron projection extension involved in neuron process guidance|neurite extension involved in neuron process guidance|neuron process extension involved in neurite guidance|neuronal cell projection extension involved in neuronal cell projection guidance|neuron projection extension involved in neurite guidance|neuron protrusion extension involved in neuronal cell projection guidance|neuronal cell projection extension involved in neuron process guidance|neurite extension involved in neurite guidance|neuronal cell projection extension involved in neuron projection guidance|neurite extension involved in neuron protrusion guidance|neuron protrusion extension involved in neuron process guidance|neuron protrusion extension involved in neuron projection guidance|neuronal cell projection extension involved in neurite guidance|neuron protrusion extension involved in neurite guidance pr 2013-07-08T15:55:17Z biological_process owl:Class GO:0099086 biolink:NamedThing synaptonemal structure A proteinaceous scaffold found between homologous chromosomes during meiosis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0110058 biolink:NamedThing positive regulation of blood vessel endothelial cell differentiation Any process that activates or increases the frequency, rate or extent of blood vessel endothelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-23T14:38:19Z biological_process owl:Class GO:0044696 biolink:NamedThing killing by virus of host cell by post-segregational killing The process by which a virus causes the death of daughter cells which do not contain its genes after host cell division, by a mechanism of post-segregational killing (PSK). The extrachromosomal viral DNA consist of two genes; the product of the second is long lived and toxic, while the product of the first is short lived and antagonizes the lethal action of the toxin. Daughter cells that do not contain the viral extrachromosomal element are killed by the long lived toxin, while daughter cells that do contain the viral extrachromosomal element are protected by the action of the short lived antitoxin it encodes. tmpzr1t_l9r_go_relaxed.owl killing by virus of host cell by toxin-antitoxin system|killing by virus of host cell by PSK Note that this process occurs after the cell division partitioning event. jl 2012-08-16T13:58:18Z biological_process owl:Class GO:0032021 biolink:NamedThing NELF complex A complex of five proteins, designated NELF-A, -B, -C, -D, and -E in human, that can physically associate with RNP polymerase II to induce transcriptional pausing. tmpzr1t_l9r_go_relaxed.owl negative elongation factor complex cellular_component owl:Class GO:0008023 biolink:NamedThing transcription elongation factor complex Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098998 biolink:NamedThing extrinsic component of postsynaptic early endosome membrane The component of the postsynaptic early endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000482 biolink:NamedThing maturation of 5S rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor 5S ribosomal RNA (rRNA) molecule into a mature 5S rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000481 biolink:NamedThing maturation of 5S rRNA Any process involved in the maturation of a precursor 5S ribosomal RNA (rRNA) molecule into a mature 5S rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070758 biolink:NamedThing regulation of interleukin-35-mediated signaling pathway Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-35-mediated binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl regulation of IL-35-mediated signaling pathway|regulation of interleukin-35-mediated signalling pathway mah 2009-06-23T01:58:43Z biological_process owl:Class GO:1905820 biolink:NamedThing positive regulation of chromosome separation Any process that activates or increases the frequency, rate or extent of chromosome separation. tmpzr1t_l9r_go_relaxed.owl positive regulation of chromatid release|up regulation of chromosome separation|upregulation of chromosome separation|up regulation of chromatid release|upregulation of chromatid release|positive regulation of rDNA separation|up regulation of rDNA separation|up-regulation of chromosome separation|up-regulation of chromatid release|activation of chromosome separation|activation of chromatid release|activation of rDNA separation|upregulation of rDNA separation|up-regulation of rDNA separation bhm 2017-01-13T13:55:36Z biological_process owl:Class GO:0044219 biolink:NamedThing host cell plasmodesma A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one host cell to that of an adjacent host cell. tmpzr1t_l9r_go_relaxed.owl jl 2009-11-12T02:50:52Z cellular_component owl:Class GO:0044156 biolink:NamedThing host cell junction A plasma membrane part that forms a specialized region of connection between two host cells or between a host cell and the host extracellular matrix. At a host cell junction, anchoring proteins extend through the host plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:04:50Z cellular_component owl:Class GO:0102467 biolink:NamedThing scutellarein 7-O-glucuronosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucuronate + scutellarein <=> UDP( + scutellarin + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:28318|MetaCyc:RXN-14058|EC:2.4.1.253 molecular_function owl:Class GO:1990609 biolink:NamedThing glutamate-cysteine ligase regulator activity Binds to and modulates the activity of glutamate-cysteine ligase. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-20T12:51:13Z molecular_function owl:Class GO:1900631 biolink:NamedThing tridecane metabolic process The chemical reactions and pathways involving tridecane. tmpzr1t_l9r_go_relaxed.owl tridecane metabolism tt 2012-05-21T06:41:16Z biological_process owl:Class GO:0007311 biolink:NamedThing maternal specification of dorsal/ventral axis, oocyte, germ-line encoded Polarization of the oocyte along the dorsal-ventral axis, by a gene product encoded by cells of the germ line. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl maternal determination of dorsal/ventral axis, oocyte, germ-line encoded|maternal specification of dorsoventral axis, oocyte, germ-line encoded|maternal specification of dorsal-ventral axis, oocyte, germ-line encoded GO:0048124 biological_process owl:Class GO:0031663 biolink:NamedThing lipopolysaccharide-mediated signaling pathway A series of molecular signals initiated by the binding of a lipopolysaccharide (LPS) to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Lipopolysaccharides are major components of the outer membrane of Gram-negative bacteria, making them prime targets for recognition by the immune system. tmpzr1t_l9r_go_relaxed.owl LPS-mediated signaling pathway|lipopolysaccharide-mediated signalling pathway biological_process owl:Class GO:1905454 biolink:NamedThing negative regulation of myeloid progenitor cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of myeloid progenitor cell differentiation. tmpzr1t_l9r_go_relaxed.owl down regulation of myeloid progenitor cell differentiation|inhibition of myeloid progenitor cell differentiation|downregulation of myeloid progenitor cell differentiation|down-regulation of myeloid progenitor cell differentiation rz 2016-09-16T12:32:26Z biological_process owl:Class GO:1905742 biolink:NamedThing Ras guanyl-nucleotide exchange factor complex A protein complex which is capable of Ras guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl rjd 2016-12-06T10:24:29Z cellular_component owl:Class GO:1900011 biolink:NamedThing negative regulation of corticotropin-releasing hormone receptor activity Any process that stops, prevents or reduces the frequency, rate or extent of corticotropin-releasing hormone receptor activity. tmpzr1t_l9r_go_relaxed.owl down regulation of CRH receptor activity|down regulation of corticotropin-releasing hormone receptor activity|down regulation of adrenocorticotropin-releasing hormone receptor activity|negative regulation of CRH receptor activity|negative regulation of adrenocorticotropin-releasing hormone receptor activity|negative regulation of corticotropin-releasing factor receptor activity|down regulation of CRF receptor activity|negative regulation of CRF receptor activity|down regulation of corticotropin-releasing factor receptor activity pr 2012-01-10T02:27:27Z biological_process owl:Class GO:1904121 biolink:NamedThing phosphatidylethanolamine transfer activity Removes phosphatidylethanolamine from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl intermembrane phosphatidylethanolamine transfer activity|phosphatidylethanolamine transporter activity|phosphatidylethanolamine carrier activity sl 2015-04-07T22:51:34Z molecular_function owl:Class GO:1904916 biolink:NamedThing transmembrane L-lysine transport from lysosomal lumen to cytosol The directed movement of L-lysine from the lysosomal lumen across the lysosomal membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl kmv 2016-01-21T16:27:41Z biological_process owl:Class GO:1905764 biolink:NamedThing regulation of protection from non-homologous end joining at telomere Any process that modulates the frequency, rate or extent of protection from non-homologous end joining at telomere. tmpzr1t_l9r_go_relaxed.owl regulation of protection from NHEJ-mediated telomere fusion nc 2016-12-20T11:28:21Z biological_process owl:Class GO:0052323 biolink:NamedThing negative regulation of phytoalexin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins. tmpzr1t_l9r_go_relaxed.owl negative regulation of phytoalexin biosynthesis|inhibition of phytoalexin biosynthesis|down-regulation of phytoalexin biosynthesis|downregulation of phytoalexin biosynthesis|down regulation of phytoalexin biosynthesis biological_process owl:Class GO:0019569 biolink:NamedThing L-arabinose catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of L-arabinose into other compounds, including xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-arabinose degradation to xylulose 5-phosphate|L-arabinose breakdown to xylulose 5-phosphate MetaCyc:ARABCAT-PWY biological_process owl:Class GO:0019572 biolink:NamedThing L-arabinose catabolic process The chemical reactions and pathways resulting in the breakdown of L-arabinose, the L-enantiomer of arabino-pentose. tmpzr1t_l9r_go_relaxed.owl L-arabinose catabolism|L-arabinose degradation|L-arabinose breakdown biological_process owl:Class GO:0106113 biolink:NamedThing positive regulation of mitotic cohesin ssDNA (lagging strand) loading Any process that activates or increases the frequency, rate or extent of mitotic cohesin ssDNA (lagging strand) loading. tmpzr1t_l9r_go_relaxed.owl hjd 2018-04-18T14:46:03Z biological_process owl:Class GO:0050583 biolink:NamedThing hydrogen dehydrogenase (NADP+) activity Catalysis of the reaction: NADP+ + H2 = NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADP-reducing hydrogenase activity|hydrogen:NADP+ oxidoreductase activity|NADP-linked hydrogenase activity EC:1.12.1.3|MetaCyc:1.12.1.3-RXN|RHEA:18637 molecular_function owl:Class GO:0016971 biolink:NamedThing flavin-linked sulfhydryl oxidase activity Catalysis of the formation of disulfide bridges in proteins using FAD as the electron acceptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032149 biolink:NamedThing response to rhamnose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rhamnose stimulus. tmpzr1t_l9r_go_relaxed.owl response to L-rhamnose stimulus|response to rhamnose stimulus biological_process owl:Class GO:0019302 biolink:NamedThing D-ribose biosynthetic process The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose). tmpzr1t_l9r_go_relaxed.owl D-ribose synthesis|D-ribose formation|D-ribose anabolism|D-ribose biosynthesis biological_process owl:Class GO:0036368 biolink:NamedThing cone photoresponse recovery The processes required for a cone photoreceptor to recover, following light activation, so that it can respond to a subsequent light stimulus. Cone recovery requires the shutoff of active participants in the phototransduction cascade, including the visual pigment and downstream signal transducers. tmpzr1t_l9r_go_relaxed.owl cone phototransduction termination|cone response recovery bf 2012-09-26T14:35:20Z biological_process owl:Class GO:1901743 biolink:NamedThing 2-deoxystreptamine catabolic process The chemical reactions and pathways resulting in the breakdown of 2-deoxystreptamine. tmpzr1t_l9r_go_relaxed.owl 2-deoxystreptamine catabolism|2-deoxystreptamine degradation|2-deoxystreptamine breakdown yaf 2013-01-14T10:02:01Z biological_process owl:Class GO:0072704 biolink:NamedThing response to mercaptoethanol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercaptoethanol stimulus. tmpzr1t_l9r_go_relaxed.owl response to 2-sulfanylethanol mah 2012-04-11T03:27:02Z biological_process owl:Class GO:0050151 biolink:NamedThing oleate hydratase activity Catalysis of the reaction: (R)-10-hydroxystearate = H(2)O + oleate. tmpzr1t_l9r_go_relaxed.owl (R)-10-hydroxystearate 10-hydro-lyase (oleate-forming)|(R)-10-hydroxystearate 10-hydro-lyase activity RHEA:21852|MetaCyc:OLEATE-HYDRATASE-RXN|KEGG_REACTION:R02813|EC:4.2.1.53 molecular_function owl:Class GO:1990298 biolink:NamedThing bub1-bub3 complex Protein complex that associates with the kinetochores. tmpzr1t_l9r_go_relaxed.owl al 2014-02-26T09:23:04Z cellular_component owl:Class GO:0044329 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of cell to cell adhesion. tmpzr1t_l9r_go_relaxed.owl canonical Wnt-activated signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signalling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion jl 2010-08-18T04:16:50Z biological_process owl:Class GO:0090193 biolink:NamedThing positive regulation of glomerulus development Any process that increases the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-18T11:17:13Z biological_process owl:Class GO:0061662 biolink:NamedThing ISG15 ligase activity Catalysis of the transfer of a ISG15 to a substrate protein via the reaction X-ISG15 + S --> X + S-ISG15, where X is either an E2 or E3 enzyme, the X-ISG15 linkage is a thioester bond, and the S-ISG15 linkage is an isopeptide bond between the C-terminal amino acid of ISG15 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T13:54:48Z molecular_function owl:Class GO:0061048 biolink:NamedThing negative regulation of branching involved in lung morphogenesis Any process that decreases the rate, frequency, or extent of the process in which a highly ordered sequence of patterning events generates the branched structures of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T10:51:31Z biological_process owl:Class GO:0016473 biolink:NamedThing sodium ion-transporting F-type ATPase complex A sodium ion-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism. tmpzr1t_l9r_go_relaxed.owl sodium-translocating F-type ATPase complex cellular_component owl:Class GO:1901811 biolink:NamedThing beta-carotene catabolic process The chemical reactions and pathways resulting in the breakdown of beta-carotene. tmpzr1t_l9r_go_relaxed.owl beta-carotene degradation|beta-carotene catabolism|beta-carotene breakdown yaf 2013-01-22T10:30:28Z biological_process owl:Class GO:0009687 biolink:NamedThing abscisic acid metabolic process The chemical reactions and pathways involving abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. tmpzr1t_l9r_go_relaxed.owl abscisic acid metabolism biological_process owl:Class GO:0005049 biolink:NamedThing nuclear export signal receptor activity Combining with a nuclear export signal (NES) on a cargo to be transported, to mediate transport of a the cargo through the nuclear pore, from the nuclear lumen to the cytoplasm. The cargo can be either a RNA or a protein. tmpzr1t_l9r_go_relaxed.owl NES receptor|exportin activity|importin-alpha export receptor activity|importin-alpha binding https://github.com/geneontology/go-ontology/issues/14336 GO:0008262 molecular_function owl:Class GO:0140142 biolink:NamedThing nucleocytoplasmic carrier activity Binding to and carrying a cargo between the nucleus and the cytoplasm by moving along with the cargo. The cargo can be either a RNA or a protein. tmpzr1t_l9r_go_relaxed.owl pre-miRNA transporter activity|nucleocytoplasmic importin/exportin activity|miRNA transporter activity https://github.com/geneontology/go-ontology/issues/17399|https://github.com/geneontology/go-ontology/issues/14336 pg 2017-12-06T13:40:40Z GO:0061717|GO:0090631 molecular_function owl:Class GO:0050686 biolink:NamedThing negative regulation of mRNA processing Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA processing. tmpzr1t_l9r_go_relaxed.owl down-regulation of mRNA processing|downregulation of mRNA processing|inhibition of mRNA processing|down regulation of mRNA processing biological_process owl:Class GO:1901011 biolink:NamedThing (S)-reticuline catabolic process The chemical reactions and pathways resulting in the breakdown of (S)-reticuline. tmpzr1t_l9r_go_relaxed.owl (S)-reticuline breakdown|(S)-reticuline degradation|(S)-reticuline catabolism yaf 2012-06-15T10:46:45Z biological_process owl:Class GO:0075254 biolink:NamedThing negative regulation of uredospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of uredospore formation, a process in which an asexual, dikaryotic, often rusty-colored spore, is formed in a structure called a uredinium. tmpzr1t_l9r_go_relaxed.owl negative regulation of ureidospore formation biological_process owl:Class GO:0140261 biolink:NamedThing BCOR complex A protein-containing complex that monoubiquitinates histone H2A on K119, thus it facilitates the maintenance of the transcriptionally repressive state of some genes, such as BCL6. It consists of the corepressor BCOR or BCORL1, a Polycomb group (PcG) and a SCF ubiquitin ligase subcomplexes. In mammals, the core subunits of the complex include the PcG and PcG-associated proteins NSPC1, RING1, RNF2, and RYBP and the components of the SCF ubiquitin ligase, SKP1, and FBXL10. tmpzr1t_l9r_go_relaxed.owl non-canonical PRC1-BCOR complex|PRC1.1 complex|BCL6 corepressor (BCOR) complex|BCOR/BCORL1 complex|non-canonical BCOR-PRC1.1 complex pg 2018-09-11T09:35:05Z cellular_component owl:Class GO:0047192 biolink:NamedThing 1-alkylglycerophosphocholine O-acetyltransferase activity Catalysis of the reaction: 1-alkyl-sn-glycero-3-phosphocholine + acetyl-CoA = 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine + CoA. tmpzr1t_l9r_go_relaxed.owl 1-alkyl-2-lyso-sn-glycero-3-phosphocholine acetyltransferase activity|lysopaf:acetyl CoA acetyltransferase activity|acetyl-CoA:lyso-PAF acetyltransferase activity|lyso-GPC:acetyl CoA acetyltransferase activity|lyso-platelet-activating factor:acetyl-CoA acetyltransferase activity|1-alkyl-2-lysolecithin acetyltransferase activity|platelet-activating factor-synthesizing enzyme activity|platelet-activating factor acylhydrolase activity|blood platelet-activating factor acetyltransferase activity|acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity|acetyl-CoA:1-alkyl-2-lyso-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity|lyso-platelet activating factor:acetyl-CoA acetyltransferase activity|acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine acyltransferase activity MetaCyc:2.3.1.67-RXN|RHEA:18461|EC:2.3.1.67 molecular_function owl:Class GO:0020025 biolink:NamedThing subpellicular microtubule Singlet microtubule that lie underneath the inner membrane pellicle complex and emanate from the basal ring of the conoid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051003 biolink:NamedThing ligase activity, forming nitrogen-metal bonds, forming coordination complexes Catalysis of the ligation of two substances via a nitrogen-metal bond, forming a coordination complex. tmpzr1t_l9r_go_relaxed.owl EC:6.6.1.- molecular_function owl:Class GO:0051002 biolink:NamedThing ligase activity, forming nitrogen-metal bonds Catalysis of the joining of a metal ion to a molecule via a nitrogen-metal bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.6.-.- molecular_function owl:Class GO:1901276 biolink:NamedThing tartrate catabolic process The chemical reactions and pathways resulting in the breakdown of tartrate. tmpzr1t_l9r_go_relaxed.owl tartrate breakdown|tartrate catabolism|tartrate degradation yaf 2012-08-17T14:52:40Z biological_process owl:Class GO:1901275 biolink:NamedThing tartrate metabolic process The chemical reactions and pathways involving tartrate. tmpzr1t_l9r_go_relaxed.owl tartrate metabolism yaf 2012-08-17T14:52:19Z biological_process owl:Class GO:0102340 biolink:NamedThing 3-oxo-behenoyl-CoA reductase activity Catalysis of the reaction: (R)-3-hydroxybehenoyl-CoA(4-) + NADP(3-) <=> 3-oxodocosanoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13299|EC:1.1.1.330 molecular_function owl:Class GO:1903867 biolink:NamedThing extraembryonic membrane development The process whose specific outcome is the progression of an extraembryonic membrane over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl cjm 2015-02-05T00:42:16Z biological_process owl:Class GO:0015917 biolink:NamedThing aminophospholipid transport The directed movement of aminophospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aminophospholipids contain phosphoric acid as a mono- or diester and an amino (NH2) group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005018 biolink:NamedThing platelet-derived growth factor alpha-receptor activity Combining with platelet-derived growth factor isoform PDGF-AA, PDGF-BB or PDGF-AB to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl alphaPDGF receptor activity|PDGF alpha-receptor activity molecular_function owl:Class GO:0070025 biolink:NamedThing carbon monoxide binding Binding to carbon monoxide (CO). tmpzr1t_l9r_go_relaxed.owl CO binding molecular_function owl:Class GO:0099107 biolink:NamedThing ion channel regulator activity involved in G protein-coupled receptor signaling pathway Modulation of the activity of an ion channel via direct interaction with it as part of G protein-coupled receptor signaling. tmpzr1t_l9r_go_relaxed.owl ion channel regulator activity involved in G-protein coupled receptor signaling pathway molecular_function owl:Class GO:0009407 biolink:NamedThing toxin catabolic process The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. tmpzr1t_l9r_go_relaxed.owl toxin catabolism|toxin degradation|toxin breakdown biological_process owl:Class GO:0015836 biolink:NamedThing lipid-linked peptidoglycan transport The directed movement of lipid-linked peptidoglycans into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl lipid-linked murein transport biological_process owl:Class GO:0004500 biolink:NamedThing dopamine beta-monooxygenase activity Catalysis of the reaction: L-ascorbate + dopamine + O(2) = (R)-noradrenaline + dehydroascorbate + H(2)O. tmpzr1t_l9r_go_relaxed.owl dopamine beta-oxidase activity|dopamine b-hydroxylase activity|(3,4-dihydroxyphenethylamine)beta-mono-oxygenase activity|dopamine hydroxylase activity|SDBH (soluble dopamine beta-monooxygenase)|3,4-dihydroxyphenethylamine beta-oxidase activity|dopamine beta-hydroxylase activity|phenylamine beta-hydroxylase activity|oxygenase, dopamine beta-mono-|MDBH (membrane-associated dopamine beta-monooxygenase)|4-(2-aminoethyl)pyrocatechol beta-oxidase activity|dopa beta-hydroxylase activity|dopamine-B-hydroxylase activity|3,4-dihydroxyphenethylamine,ascorbate:oxygen oxidoreductase (beta-hydroxylating) EC:1.14.17.1|MetaCyc:DOPAMINE-BETA-MONOOXYGENASE-RXN|KEGG_REACTION:R02535|RHEA:19117|Reactome:R-HSA-209891 molecular_function owl:Class GO:1900356 biolink:NamedThing positive regulation of methanofuran metabolic process Any process that activates or increases the frequency, rate or extent of methanofuran metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of methanofuran metabolism|up-regulation of methanofuran metabolic process|up regulation of methanofuran metabolic process|up-regulation of methanofuran metabolism|up regulation of methanofuran metabolism|upregulation of methanofuran metabolic process|positive regulation of methanofuran metabolism|activation of methanofuran metabolism|activation of methanofuran metabolic process tt 2012-04-06T02:16:01Z biological_process owl:Class GO:0102624 biolink:NamedThing scutellarein 7-methyl ether 4'-O-methyltransferase activity Catalysis of the reaction: scutellarein 7-methyl ether + S-adenosyl-L-methionine <=> ladanein + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15529 molecular_function owl:Class GO:0019632 biolink:NamedThing shikimate metabolic process The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids. tmpzr1t_l9r_go_relaxed.owl shikimate metabolism biological_process owl:Class GO:0001887 biolink:NamedThing selenium compound metabolic process The chemical reactions and pathways involving compounds that contain selenium, such as selenocysteine. tmpzr1t_l9r_go_relaxed.owl selenium compound metabolism|selenium metabolism|selenium metabolic process biological_process owl:Class GO:0044014 biolink:NamedThing histone acetyltransferase activity (H2B-K5 specific) Catalysis of the reaction: acetyl-CoA + histone H2B L-lysine (position 5) = CoA + histone H2B N6-acetyl-L-lysine (position 5). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H2B-K5 specific) molecular_function owl:Class GO:1990302 biolink:NamedThing Bre1-Rad6 ubiquitin ligase complex A ubiquitin ligase complex consisting of Bre1 and Rad6 that mediates monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. It thereby plays a central role in histone code and gene regulation. It also modulates the formation of double-strand breaks during meiosis. tmpzr1t_l9r_go_relaxed.owl Bre1-Rad6 complex This complex has been identified in Saccharomyces cerevisiae (P19812) - see PMID:19531475 (inferred from direct assay). bhm 2014-02-28T16:50:34Z cellular_component owl:Class GO:0031751 biolink:NamedThing D4 dopamine receptor binding Binding to a D4 dopamine receptor. tmpzr1t_l9r_go_relaxed.owl D4 dopamine receptor ligand molecular_function owl:Class GO:0050170 biolink:NamedThing peptidyl-glutaminase activity Catalysis of the reaction: alpha-N-peptidyl-L-glutamine + H2O = alpha-N-peptidyl-L-glutamate + NH3. tmpzr1t_l9r_go_relaxed.owl peptidoglutaminase I activity|peptidoglutaminase activity|peptideglutaminase activity|peptidyl-L-glutamine amidohydrolase activity EC:3.5.1.43|MetaCyc:PEPTIDYL-GLUTAMINASE-RXN|RHEA:10032 molecular_function owl:Class GO:0140425 biolink:NamedThing galactose import across plasma membrane The directed movement of galactose from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18788 pg 2020-02-10T08:46:09Z biological_process owl:Class GO:0036223 biolink:NamedThing cellular response to adenine starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of adenine. tmpzr1t_l9r_go_relaxed.owl cellular response to adenine deprivation bf 2012-05-09T02:26:52Z biological_process owl:Class GO:0031676 biolink:NamedThing plasma membrane-derived thylakoid membrane The pigmented membrane of a plasma membrane-derived thylakoid. tmpzr1t_l9r_go_relaxed.owl plasma membrane thylakoid membrane cellular_component owl:Class GO:0006679 biolink:NamedThing glucosylceramide biosynthetic process The chemical reactions and pathways resulting in the formation of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl glucosylceramide formation|glucosylceramide synthesis|glucosylceramide biosynthesis|glucosylceramide anabolism biological_process owl:Class GO:0007614 biolink:NamedThing short-term memory The memory process that deals with the storage, retrieval and modification of information received a short time (up to about 30 minutes) ago. This type of memory is typically dependent on direct, transient effects of second messenger activation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Short-term_memory biological_process owl:Class GO:0047194 biolink:NamedThing indoleacetylglucose-inositol O-acyltransferase activity Catalysis of the reaction: 1-O-(indol-3-ylacetyl)-beta-D-glucose + myo-inositol = 1L-1-O-(indol-3-yl)acetyl-myo-inositol + D-glucose. tmpzr1t_l9r_go_relaxed.owl 1-O-(indol-3-ylacetyl)-beta-D-glucose:myo-inositol indole-3-ylacetyltransferase activity|1-O-(indol-3-yl)acetyl-beta-D-glucose:myo-inositol (indol-3-yl)acetyltransferase activity|indole-3-acetyl-beta-1-D-glucoside:myo-inositol indoleacetyltransferase activity EC:2.3.1.72|RHEA:21180|KEGG_REACTION:R04333|MetaCyc:2.3.1.72-RXN molecular_function owl:Class GO:0102613 biolink:NamedThing trimethyluric acid monooxygenase activity Catalysis of the reaction: 1,3,7-trimethyluric acid + O2 + NADH + 3 H+ <=> 1,3,7-trimethyl-5-hydroxyisourate + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:48992|MetaCyc:RXN-15454 molecular_function owl:Class GO:0021815 biolink:NamedThing modulation of microtubule cytoskeleton involved in cerebral cortex radial glia guided migration Rearrangements of the microtubule cytoskeleton that contribute to the movement of cells along radial glial cells as a component of the process of cerebral cortex glial-mediated radial migration. tmpzr1t_l9r_go_relaxed.owl modulation of microtubule cytoskeleton involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0033815 biolink:NamedThing biphenyl synthase activity Catalysis of the reaction: 3 malonyl-CoA + benzoyl-CoA = 4 CoA + 3,5-dihydroxybiphenyl + 4 CO2. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:benzoyl-CoA malonyltransferase activity|BIS RHEA:22292|MetaCyc:2.3.1.177-RXN|EC:2.3.1.177 molecular_function owl:Class GO:0006925 biolink:NamedThing inflammatory cell apoptotic process Any apoptotic process in an inflammatory cell, any cell participating in the inflammatory response to a foreign substance e.g. neutrophil, macrophage. tmpzr1t_l9r_go_relaxed.owl programmed cell death of inflammatory cells by apoptosis|inflammatory cell programmed cell death by apoptosis|programmed cell death, inflammatory cells|killing of inflammatory cells|apoptosis of inflammatory cells|inflammatory cell apoptosis biological_process owl:Class GO:0010809 biolink:NamedThing negative regulation of synaptic vesicle priming Any process that decreases the frequency, rate or extent of synaptic vesicle priming. Synaptic vesicle priming is the formation of SNARE-containing complexes, bringing synaptic vesicle membrane and plasma membranes into close proximity and thereby facilitating membrane fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048693 biolink:NamedThing regulation of collateral sprouting of injured axon Any process that modulates the frequency, rate or extent of collateral sprouting of an injured axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905471 biolink:NamedThing regulation of histone H3-K79 dimethylation Any process that modulates the frequency, rate or extent of histone H3-K79 dimethylation. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3 K79 dimethylation|regulation of histone lysine H3 K79 dimethylation hbye 2016-09-21T15:27:02Z biological_process owl:Class GO:0032251 biolink:NamedThing positive regulation of adenosine transport Any process that activates or increases the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl upregulation of adenosine transport|up regulation of adenosine transport|stimulation of adenosine transport|activation of adenosine transport|up-regulation of adenosine transport biological_process owl:Class GO:0032248 biolink:NamedThing positive regulation of purine nucleoside transport Any process that activates or increases the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl stimulation of purine nucleoside transport|up regulation of purine nucleoside transport|activation of purine nucleoside transport|upregulation of purine nucleoside transport|up-regulation of purine nucleoside transport biological_process owl:Class GO:0120040 biolink:NamedThing regulation of macrophage proliferation Any process that modulates the frequency, rate or extent of macrophage proliferation. tmpzr1t_l9r_go_relaxed.owl krc 2017-05-10T20:38:19Z biological_process owl:Class GO:1990003 biolink:NamedThing inosine-diphosphatase activity Catalysis of the reaction: IDP + H2O = IMP + phosphate. tmpzr1t_l9r_go_relaxed.owl IDP phosphatase activity|IDPase activity|inosine diphosphatase activity Reactome:R-HSA-2509816|RHEA:35207|EC:3.6.1.64 jl 2012-12-05T16:46:52Z GO:0090450 molecular_function owl:Class GO:0071410 biolink:NamedThing cellular response to cyclopentenone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T03:09:49Z biological_process owl:Class GO:0042646 biolink:NamedThing plastid nucleoid The region of a plastid to which the DNA is confined. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0008859 biolink:NamedThing exoribonuclease II activity Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction. tmpzr1t_l9r_go_relaxed.owl ribonuclease II activity|BN ribonuclease activity|RNase II activity|ribonuclease Q|RNase II|5'-exoribonuclease activity|Escherichia coli exo-RNase II MetaCyc:3.1.13.1-RXN|EC:3.1.13.1 molecular_function owl:Class GO:0016896 biolink:NamedThing exoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl exoribonuclease activity, producing 5' phosphomonoesters EC:3.1.13.-|Reactome:R-HSA-429860 molecular_function owl:Class GO:0060306 biolink:NamedThing regulation of membrane repolarization Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential, usually from positive to negative. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106249 biolink:NamedThing Nicalin-NOMO complex A protein complex regulating Nodal signaling. Subunits are highly conserved in vertebrates and include Nicalin, NOMO and TMEM147. tmpzr1t_l9r_go_relaxed.owl Nicalin-TMEM147-NOMO complex hjd 2020-02-18T17:51:43Z cellular_component owl:Class GO:0120314 biolink:NamedThing negative regulation of oocyte karyosome formation Any process that stops, prevents, or reduces the frequency, rate or extent of oocyte karyosome formation, the chromosome organization process in which meiotic chromosomes in the oocyte nucleus cluster together to form a compact spherical structure called the karyosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21298 krc 2021-04-19T21:39:47Z biological_process owl:Class GO:0036528 biolink:NamedThing peptidyl-lysine deglycation The removal of a sugar or dicarbonyl from a lysine residue of a glycated protein. tmpzr1t_l9r_go_relaxed.owl deglycation of N-acetyllysine bf 2016-08-04T10:37:12Z biological_process owl:Class GO:0003843 biolink:NamedThing 1,3-beta-D-glucan synthase activity Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). tmpzr1t_l9r_go_relaxed.owl UDP-glucose-1,3-beta-D-glucan glucosyltransferase activity|GS-II|1,3-beta-D-glucan synthetase activity|callose synthetase activity|callose synthase activity|paramylon synthetase|1,3-beta-glucan-uridine diphosphoglucosyltransferase activity|1,3-beta-D-glucan-UDP glucosyltransferase activity|(1,3)-beta-glucan (callose) synthase activity|UDP-glucose:(1,3)beta-glucan synthase activity|UDPglucose:1,3-beta-D-glucan 3-beta-D-glucosyltransferase activity|UDP-glucose-1,3-beta-glucan glucosyltransferase activity|1,3-beta-glucan synthase activity|beta-1,3-glucan synthetase activity|beta-1,3-glucan synthase activity|uridine diphosphoglucose-1,3-beta-glucan glucosyltransferase activity|UDP-glucose-beta-glucan glucosyltransferase activity|UDP-glucose:1,3-beta-D-glucan 3-beta-D-glucosyltransferase activity|UDPglucose-1,3-beta-D-glucan glucosyltransferase activity MetaCyc:13-BETA-GLUCAN-SYNTHASE-RXN|EC:2.4.1.34|RHEA:21476 GO:0009981 molecular_function owl:Class GO:1903496 biolink:NamedThing response to 11-deoxycorticosterone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 11-deoxycorticosterone stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-09-25T17:01:35Z biological_process owl:Class GO:0009735 biolink:NamedThing response to cytokinin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. tmpzr1t_l9r_go_relaxed.owl response to cytokinin stimulus biological_process owl:Class GO:0031707 biolink:NamedThing endothelin A receptor binding Binding to an endothelin A receptor. tmpzr1t_l9r_go_relaxed.owl endothelin-1 receptor binding|endothelin A receptor ligand molecular_function owl:Class GO:0010816 biolink:NamedThing calcitonin catabolic process The chemical reactions and pathways resulting in the breakdown of the peptide calcitonin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050515 biolink:NamedThing 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity Catalysis of the reaction: 4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 2-phosphotransferase activity|4-diphosphocytidyl-2-C-methyl-D-erythritol kinase activity|CDP-ME kinase activity|4-diphosphocytidyl-2C-methyl-D-erythritol kinase activity|CMK activity RHEA:18437|EC:2.7.1.148|KEGG_REACTION:R05634|MetaCyc:2.7.1.148-RXN GO:0008698 molecular_function owl:Class GO:1990744 biolink:NamedThing primary miRNA methylation The posttranscriptional addition of methyl groups to specific residues in an primary miRNA molecule. tmpzr1t_l9r_go_relaxed.owl sp 2015-05-15T05:18:47Z biological_process owl:Class GO:0150177 biolink:NamedThing negative regulation of phosphatidylethanolamine metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylethanolamine metabolic process. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-21T14:05:00Z biological_process owl:Class GO:0003180 biolink:NamedThing aortic valve morphogenesis The process in which the structure of the aortic valve is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T11:29:42Z biological_process owl:Class GO:0033844 biolink:NamedThing galactose-6-sulfurylase activity Catalysis of the elimination of sulfate from the D-galactose 6-sulfate residues of porphyran, producing 3,6-anhydrogalactose residues. tmpzr1t_l9r_go_relaxed.owl porphyran sulfatase activity|galactose 6-sulfatase activity|D-galactose-6-sulfate:alkyltransferase (cyclizing) activity|galactose-6-sulfatase activity EC:2.5.1.5|MetaCyc:2.5.1.5-RXN molecular_function owl:Class GO:0032970 biolink:NamedThing regulation of actin filament-based process Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900480 biolink:NamedThing regulation of diacylglycerol biosynthetic process Any process that modulates the frequency, rate or extent of diacylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of diacylglycerol anabolism|regulation of diacylglycerol synthesis|regulation of diacylglycerol formation|regulation of diacylglycerol biosynthesis al 2012-05-02T10:08:59Z biological_process owl:Class GO:1905917 biolink:NamedThing positive regulation of cell differentiation involved in phenotypic switching Any process that activates or increases the frequency, rate or extent of cell differentiation involved in phenotypic switching. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell differentiation involved in phenotypic switching|activation of cell differentiation involved in phenotypic switching|up regulation of cell differentiation involved in phenotypic switching|upregulation of cell differentiation involved in phenotypic switching rph 2017-02-08T12:23:31Z biological_process owl:Class GO:0018113 biolink:NamedThing lysine racemase activity Catalysis of the reaction: L-lysine = D-lysine. tmpzr1t_l9r_go_relaxed.owl EC:5.1.1.5|MetaCyc:LYSINE-RACEMASE-RXN|RHEA:22864 molecular_function owl:Class GO:0002121 biolink:NamedThing inter-male aggressive behavior Aggressive behavior based on competition between males of the same species over access to resources such as females, dominance, status, etc. and characterized by noise, threats, and is often less injurious. tmpzr1t_l9r_go_relaxed.owl inter-male aggression biological_process owl:Class GO:0102526 biolink:NamedThing 8-demethylnovobiocic acid C8-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 8-desmethylnovobiocic acid <=> S-adenosyl-L-homocysteine + novobiocic acid + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14543|EC:2.1.1.284|RHEA:36651 molecular_function owl:Class GO:0038184 biolink:NamedThing cell surface bile acid receptor signaling pathway A series of molecular signals initiated by binding of a bile acid to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl membrane bile acid receptor signaling pathway bf 2013-05-16T11:00:42Z biological_process owl:Class GO:0008671 biolink:NamedThing 2-dehydro-3-deoxygalactonokinase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-galactonate + ATP = 6-phospho-2-dehydro-3-deoxy-D-galactonate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxy-galactonokinase activity|2-keto-3-deoxygalactonokinase activity|2-oxo-3-deoxygalactonate kinase activity|ATP:2-dehydro-3-deoxy-D-galactonate 6-phosphotransferase activity|2-keto-3-deoxygalactonate kinase (phosphorylating) KEGG_REACTION:R03387|EC:2.7.1.58|RHEA:16525|MetaCyc:DEHYDDEOXGALACTKIN-RXN molecular_function owl:Class GO:0044613 biolink:NamedThing nuclear pore central transport channel The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153. tmpzr1t_l9r_go_relaxed.owl nuclear pore central plug|karyopherin docking complex|nuclear pore transport channel|nuclear pore central channel jl 2012-06-20T01:25:30Z cellular_component owl:Class GO:0052866 biolink:NamedThing phosphatidylinositol phosphate phosphatase activity Catalysis of the reaction: phosphatidylinositol phosphate(n) + H2O = phosphatidylinositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from a phosphatidylinositol phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoinositide phosphatase activity ai 2011-12-13T01:20:17Z molecular_function owl:Class GO:1903753 biolink:NamedThing negative regulation of p38MAPK cascade Any process that stops, prevents or reduces the frequency, rate or extent of p38MAPK cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of p38 cascade|downregulation of p38 cascade|inhibition of p38MAPK cascade|down regulation of p38MAPK cascade|down-regulation of p38MAPK cascade|down-regulation of p38 MAPK cascade|down-regulation of p38 cascade|down regulation of p38 cascade|negative regulation of p38 MAPK cascade|down regulation of p38 MAPK cascade|downregulation of p38 MAPK cascade|inhibition of p38 cascade|downregulation of p38MAPK cascade|inhibition of p38 MAPK cascade krc 2014-12-12T23:09:26Z biological_process owl:Class GO:0050474 biolink:NamedThing (S)-norcoclaurine synthase activity Catalysis of the reaction: 4-(2-aminoethyl)benzene-1,2-diol + 4-hydroxyphenylacetaldehyde = (S)-norcoclaurine + H2O. tmpzr1t_l9r_go_relaxed.owl (S)-norlaudanosoline synthase activity|4-hydroxyphenylacetaldehyde hydro-lyase (adding dopamine)|4-hydroxyphenylacetaldehyde hydro-lyase [adding dopamine; (S)-norcoclaurine-forming] MetaCyc:S-NORLAUDANOSOLINE-SYNTHASE-RXN|EC:4.2.1.78|RHEA:16173 GO:0050475 molecular_function owl:Class GO:0071967 biolink:NamedThing lipopolysaccharide core heptosyltransferase activity Catalysis of the reaction: glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose = glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl LPS core heptosyltransferase activity RHEA:29923|MetaCyc:RXN0-5122 mah 2010-10-14T05:13:31Z molecular_function owl:Class GO:0008920 biolink:NamedThing lipopolysaccharide heptosyltransferase activity Catalysis of the reaction: a lipopolysaccharide + ADP-L-glycero-beta-D-manno-heptose = a heptosylated lipopolysaccharide + ADP + H+. tmpzr1t_l9r_go_relaxed.owl LPS heptosyltransferase activity molecular_function owl:Class GO:1902077 biolink:NamedThing negative regulation of lateral motor column neuron migration Any process that stops, prevents or reduces the frequency, rate or extent of lateral motor column neuron migration. tmpzr1t_l9r_go_relaxed.owl downregulation of lateral motor column neuron migration|down-regulation of lateral motor column neuron migration|down regulation of lateral motor column neuron migration|inhibition of lateral motor column neuron migration pr 2013-04-23T14:42:23Z biological_process owl:Class GO:0060143 biolink:NamedThing positive regulation of syncytium formation by plasma membrane fusion Any process that increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018083 biolink:NamedThing peptidyl-L-3-oxoalanine biosynthetic process from peptidyl-cysteine or peptidyl-serine The modification of peptidyl-cysteine or peptidyl-serine to peptidyl-L-3-oxoalanine; characteristic of the active sites of arylsulfatases. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-3-oxoalanine anabolism from peptidyl-cysteine or peptidyl-serine|peptidyl-L-3-oxoalanine synthesis from peptidyl-cysteine or peptidyl-serine|peptidyl-L-3-oxoalanine formation from peptidyl-cysteine or peptidyl-serine RESID:AA0185 biological_process owl:Class GO:1901621 biolink:NamedThing negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning Any process that stops, prevents or reduces the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning. tmpzr1t_l9r_go_relaxed.owl down-regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|down-regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|down-regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|down-regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|inhibition of hh signaling pathway involved in dorsal/ventral neural tube patterning|down regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|downregulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|down regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|downregulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|negative regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|negative regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|down regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|inhibition of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|downregulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning|downregulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning|down regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|inhibition of smoothened signalling pathway involved in dorsal/ventral neural tube patterning|negative regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning|inhibition of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning krc 2012-11-13T20:12:01Z biological_process owl:Class GO:0033173 biolink:NamedThing calcineurin-NFAT signaling cascade Any intracellular signal transduction in which the signal is passed on within the cell by activation of a member of the NFAT protein family as a consequence of NFAT dephosphorylation by Ca(2+)-activated calcineurin. The cascade begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin dephosphorylates multiple phosphoserine residues on NFAT, resulting in the translocation of NFAT to the nucleus. The cascade ends with regulation of transcription by NFAT. The calcineurin-NFAT cascade lies downstream of many cell surface receptors, including G protein-coupled receptors (GPCRs) and receptor tyrosine kinases (RTKs) that signal to mobilize calcium ions (Ca2+). tmpzr1t_l9r_go_relaxed.owl calcineurin-NFAT signalling pathway|calcineurin-NFAT signaling pathway biological_process owl:Class GO:0051597 biolink:NamedThing response to methylmercury Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus. tmpzr1t_l9r_go_relaxed.owl response to MeHg+|response to CH3-Hg+ biological_process owl:Class GO:1902550 biolink:NamedThing lymphoid lineage cell migration into thymus involved in thymus epithelium morphogenesis Any lymphoid lineage cell migration into thymus that is involved in thymus epithelium morphogenesis. tmpzr1t_l9r_go_relaxed.owl lymphoid lineage restricted progenitor cell migration into thymus involved in thymus epithelium morphogenesis|lymphoid lineage cell migration into thymus involved in thymic epithelium morphogenesis|lymphoid lineage restricted progenitor cell migration into thymus involved in thymic epithelium morphogenesis pr 2013-12-04T21:13:33Z biological_process owl:Class GO:0098922 biolink:NamedThing extrinsic component of dense core granule membrane The component of the dense core granule membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097326 biolink:NamedThing melanocyte adhesion The attachment of a melanocyte to another cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-08T10:12:03Z biological_process owl:Class GO:0090136 biolink:NamedThing epithelial cell-cell adhesion The attachment of an epithelial cell to another epithelial cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T01:56:53Z biological_process owl:Class GO:0031472 biolink:NamedThing propanediol degradation polyhedral organelle An organelle found in bacteria consisting of a proteinaceous coat containing enzymes for the degradation of 1,2-propanediol whose purpose is the protection of the rest of the cell from the toxic propionaldehyde product of the enzyme diol dehydratase. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031469 biolink:NamedThing polyhedral organelle An organelle found in bacteria consisting of a proteinaceous coat containing metabolic enzymes whose purpose is the sequestration or concentration of metabolites and which has the appearance of a polygonal granule by electron microscopy. tmpzr1t_l9r_go_relaxed.owl bacterial microcompartment|BAC https://github.com/geneontology/go-ontology/issues/16852 cellular_component owl:Class GO:0031386 biolink:NamedThing protein tag A molecular function exhibited by a protein that is covalently attached (AKA tagged or conjugated) to another protein where it acts as a marker, recognized by the cellular apparatus to target the tagged protein for some cellular process such as modification, sequestration, transport or degradation. tmpzr1t_l9r_go_relaxed.owl covalent modifier|ubiquitin|ubiquitin-like protein modifier|protein tagging activity Use this term to annotate conjugated tags, not for conjugating enzymes. At the time of writing, all known gene products with this activity are ubiquitin-like, either based on overall sequence similarity or the presence of common motifs and structures. molecular_function owl:Class GO:1904524 biolink:NamedThing negative regulation of DNA amplification Any process that stops, prevents or reduces the frequency, rate or extent of DNA amplification. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA amplification|inhibition of DNA amplification|down-regulation of DNA amplification|downregulation of DNA amplification mcc 2015-07-29T16:24:19Z biological_process owl:Class GO:0033722 biolink:NamedThing malonate-semialdehyde dehydrogenase activity Catalysis of the reaction: 3-oxopropanoate + NAD(P)+ + H2O = malonate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 3-oxopropanoate:NAD(P)+ oxidoreductase activity|malonic semialdehyde dehydrogenase activity MetaCyc:MALONATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|EC:1.2.1.15 molecular_function owl:Class GO:0000487 biolink:NamedThing maturation of 5.8S rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor 5.8S ribosomal RNA (rRNA) molecule into a mature 5.8S rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 8.8S rRNA, the 2S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0040022 biolink:NamedThing feminization of hermaphroditic germ-line The determination of female sex and sexual phenotype in the germ-line of the hermaphrodite. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0040021 biolink:NamedThing hermaphrodite germ-line sex determination The determination of sex and sexual phenotype in the germ line of a hermaphrodite. tmpzr1t_l9r_go_relaxed.owl GO:0042005 biological_process owl:Class GO:0044651 biolink:NamedThing adhesion of symbiont to host epithelial cell The attachment of a symbiont to a host epithelial cell via adhesion molecules, general stickiness etc., either directly or indirectly. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-12T12:47:09Z biological_process owl:Class GO:0036256 biolink:NamedThing cellular response to methylamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-15T01:08:00Z biological_process owl:Class GO:0050000 biolink:NamedThing chromosome localization Any process in which a chromosome is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of chromosome localization|establishment and maintenance of chromosome position|chromosome localisation biological_process owl:Class GO:1905704 biolink:NamedThing positive regulation of inhibitory synapse assembly Any process that activates or increases the frequency, rate or extent of inhibitory synapse assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of inhibitory synapse assembly|up regulation of inhibitory synapse formation|activation of inhibitory synapse formation|up-regulation of inhibitory synapse formation|activation of inhibitory synapse assembly|up regulation of inhibitory synapse assembly|upregulation of inhibitory synapse assembly|upregulation of inhibitory synapse formation|positive regulation of inhibitory synapse formation tb 2016-11-16T18:55:49Z biological_process owl:Class GO:0051965 biolink:NamedThing positive regulation of synapse assembly Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse. tmpzr1t_l9r_go_relaxed.owl stimulation of synapse assembly|positive regulation of synaptogenesis|upregulation of synapse assembly|up regulation of synapse assembly|activation of synapse assembly|up-regulation of synapse assembly|positive regulation of synapse biogenesis biological_process owl:Class GO:1902766 biolink:NamedThing skeletal muscle satellite cell migration The orderly movement of a skeletal muscle satellite cell from one site to another. Migration of these cells is a key step in the process of growth and repair of skeletal muscle cells. tmpzr1t_l9r_go_relaxed.owl mr 2014-03-10T15:20:28Z biological_process owl:Class GO:0031817 biolink:NamedThing P2Y8 nucleotide receptor binding Binding to a P2Y8 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y8 nucleotide receptor ligand molecular_function owl:Class GO:0035883 biolink:NamedThing enteroendocrine cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an enteroendocrine cell. Enteroendocrine cells are hormonally active epithelial cells in the gut that constitute the diffuse neuroendocrine system. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-06T11:48:51Z biological_process owl:Class GO:0035685 biolink:NamedThing helper T cell diapedesis The passage of a helper T cell between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation. tmpzr1t_l9r_go_relaxed.owl T-helper cell diapedesis|helper T-cell diapedesis bf 2011-02-23T01:11:52Z biological_process owl:Class GO:0050904 biolink:NamedThing diapedesis The passage of a leukocyte between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation. tmpzr1t_l9r_go_relaxed.owl Note that the term diapedesis, although sometimes used as a direct synonym for cellular extravasation, is used here for the specific final step of the process, in concordance with recent reviews of the topic. biological_process owl:Class GO:0031648 biolink:NamedThing protein destabilization Any process that decreases the stability of a protein, making it more vulnerable to degradative processes or aggregation. tmpzr1t_l9r_go_relaxed.owl protein destabilisation|negative regulation of protein stability biological_process owl:Class GO:0031647 biolink:NamedThing regulation of protein stability Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035260 biolink:NamedThing internal genitalia morphogenesis The process in which the anatomical structures of the internal genitalia are generated and organized. The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046406 biolink:NamedThing magnesium protoporphyrin IX methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + magnesium protoporphyrin IX = S-adenosyl-L-homocysteine + H(+) + magnesium protoporphyrin IX 13-monomethyl ester. tmpzr1t_l9r_go_relaxed.owl (-)-S-adenosyl-L-methionine:magnesium-protoporphyrin IX methyltransferase activity|S-adenosyl-L-methionine:magnesium-protoporphyrin O-methyltransferase activity|S-adenosyl-L-methionine:magnesium-protoporphyrin-IX O-methyltransferase activity|S-adenosylmethionine-magnesium protoporphyrin methyltransferase activity|S-adenosylmethioninemagnesium protoporphyrin methyltransferase activity|Mg-protoporphyrin IX methyltransferase activity|S-adenosyl-L-methionine:Mg protoporphyrin methyltransferase activity|magnesium-protoporphyrin O-methyltransferase activity EC:2.1.1.11|RHEA:17809|MetaCyc:RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN|KEGG_REACTION:R04237 molecular_function owl:Class GO:0008793 biolink:NamedThing aromatic-amino-acid:2-oxoglutarate aminotransferase activity Catalysis of the reaction: an aromatic amino acid + 2-oxoglutarate = an aromatic oxo acid + L-glutamate. tmpzr1t_l9r_go_relaxed.owl aromatic amino acid transferase activity|aromatic-amino-acid transaminase activity|aromatic amino acid aminotransferase activity|aromatic aminotransferase activity|ArAT EC:2.6.1.57|RHEA:17533|MetaCyc:2.6.1.57-RXN|UM-BBD_reactionID:r0297 molecular_function owl:Class GO:0036081 biolink:NamedThing extracellular ammonia-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when extracellular ammonia (NH3) has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ionotropic ammonia receptor activity bf 2011-12-20T04:47:48Z molecular_function owl:Class GO:0052102 biolink:NamedThing positive regulation by symbiont of defense-related host calcium-dependent protein kinase pathway Any process in which an organism activates, maintains or increases the frequency, rate or extent of the host calcium-dependent protein kinase pathway during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by symbiont of defense-related host calcium-dependent protein kinase pathway|positive regulation of defense-related host CDPK pathway by organism|activation by symbiont of defense-related host calcium-dependent protein kinase pathway|stimulation by symbiont of defense-related host calcium-dependent protein kinase pathway|upregulation by symbiont of defense-related host calcium-dependent protein kinase pathway|positive regulation by organism of defense-related calcium-dependent protein kinase pathway in other organism involved in symbiotic interaction|up regulation by symbiont of defense-related host calcium-dependent protein kinase pathway GO:0052287 biological_process owl:Class GO:0010841 biolink:NamedThing positive regulation of circadian sleep/wake cycle, wakefulness Any process that increases the frequency, or extent of the wakeful phase of the circadian sleep/wake cycle. The wakeful phase is the part of the circadian sleep/wake cycle where the organism is not asleep. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036067 biolink:NamedThing light-dependent chlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors, which occur in the presence of light. tmpzr1t_l9r_go_relaxed.owl light-dependent chlorophyll synthesis|light-dependent chlorophyll formation|light-dependent chlorophyll anabolism|light dependent chlorophyll biosynthetic process|light-dependent chlorophyll biosynthesis bf 2011-12-15T04:42:47Z biological_process owl:Class GO:0036371 biolink:NamedThing protein localization to T-tubule A process in which a protein is transported to, or maintained in, the T-tubule. The T-tubule is an invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. tmpzr1t_l9r_go_relaxed.owl protein localization to T tubule|protein localisation to T-tubule|protein localization to transverse tubule bf 2012-10-08T17:10:29Z biological_process owl:Class GO:0097573 biolink:NamedThing glutathione oxidoreductase activity Catalysis of the reaction: protein-S-S-glutathione + glutathione-SH = protein-SH + glutathione-S-S-glutathione. tmpzr1t_l9r_go_relaxed.owl Note that this activity is different from GO:0015038 'glutathione disulfide oxidoreductase activity'. See PMID:18992757: "Grxs [glutaredoxins] can also reduce mixed disulfides between proteins or low molecular weight thiols and GSH in reactions that require only their N-terminal active- site cysteine. It is important to note that the reduction of glutathionylated substrates through the monothiol mechanism seems to be the major activity of Grxs; all dithiol Grxs described so far catalyze these reactions, but not all dithiol Grxs catalyze the reduction of protein disulfides by the dithiol mechanism". pr 2014-02-19T13:41:38Z molecular_function owl:Class GO:0150141 biolink:NamedThing negative regulation of CD86 production Any process that stops, prevents or reduces the frequency, rate or extent of CD86 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of CD86 biosynthetic process bc 2019-12-08T09:33:39Z biological_process owl:Class GO:0140593 biolink:NamedThing host apoplast The apoplast region surrounding a host plant cell. Plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl host cell apoplast https://github.com/geneontology/go-ontology/issues/21343|https://github.com/geneontology/go-ontology/issues/20814 pg 2021-02-09T18:56:11Z cellular_component owl:Class GO:0034538 biolink:NamedThing 3-methylsalicylaldehyde dehydrogenase activity Catalysis of the reaction: 3-methylsalicylaldehyde + NAD+ = 3-methylsalicylate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0784 molecular_function owl:Class GO:0008849 biolink:NamedThing enterochelin esterase activity Catalysis of the reaction: enterobactin + 3 H2O = 3 N-23-dihydroxybenzoyl-L-serine + 3 H+. tmpzr1t_l9r_go_relaxed.owl enterobactin esterase activity MetaCyc:RXN0-1661|RHEA:28018 molecular_function owl:Class GO:0110123 biolink:NamedThing regulation of myotube cell migration Any process that modulates the frequency, rate or extent of myotube cell migration. tmpzr1t_l9r_go_relaxed.owl kmv 2018-08-22T21:06:53Z biological_process owl:Class GO:0042899 biolink:NamedThing arabinan transmembrane transport The process in which arabinan is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl arabinan transport biological_process owl:Class GO:0009747 biolink:NamedThing hexokinase-dependent signaling A series of molecular signals mediated by hexose and dependent on the detection of hexokinase. tmpzr1t_l9r_go_relaxed.owl hexokinase-dependent signalling biological_process owl:Class GO:0102940 biolink:NamedThing phloroglucinol O-methyltransferase activity Catalysis of the reaction: phloroglucinol + S-adenosyl-L-methionine = H+ + 3,5-dihydroxyanisole + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9020 molecular_function owl:Class GO:0036210 biolink:NamedThing protein modification process in other organism The covalent alteration performed by one organism of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) in another organism. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). tmpzr1t_l9r_go_relaxed.owl protein modification in other organism bf 2012-04-26T01:29:29Z biological_process owl:Class GO:0047529 biolink:NamedThing 2,3-dimethylmalate lyase activity Catalysis of the reaction: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2,3-dimethylmalate pyruvate-lyase activity|(2R,3S)-2,3-dimethylmalate pyruvate-lyase (propanoate-forming)|(2R,3S)-2,3-dimethylmalate pyruvate-lyase activity MetaCyc:23-DIMETHYLMALATE-LYASE-RXN|EC:4.1.3.32|RHEA:10472|KEGG_REACTION:R01355 molecular_function owl:Class GO:0052630 biolink:NamedThing UDP-N-acetylgalactosamine diphosphorylase activity Catalysis of the reaction: UTP + N-acetyl-alpha-D-galactosamine 1-phosphate = diphosphate + UDP-N-acetyl-D-galactosamine. tmpzr1t_l9r_go_relaxed.owl uridine diphosphate-N-acetylgalactosamine pyrophosphorylase activity|UDP-N-acetylgalactosamine pyrophosphorylase activity|UTP:2-acetamido-2-deoxy-alpha-D-galactose-1-phosphate uridylyltransferase activity|UDP-acetylgalactosamine pyrophosphorylase activity|uridine diphosphoacetylgalactosamine pyrophosphorylase activity|N-acetylgalactosamine-1-phosphate uridyltransferase activity|UDP-GalNAc pyrophosphorylase activity|uridine diphosphoacetylgalactosamine phosphorylase activity|N-acetylgalactosamine 1-phosphate uridylyltransferase|UTP:N-acetyl-alpha-D-galactosamine-1-phosphate uridylyltransferase activity RHEA:34363|EC:2.7.7.83 molecular_function owl:Class GO:0060648 biolink:NamedThing mammary gland bud morphogenesis The process in which anatomical structures of the mammary gland buds are generated and organized. Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:42:22Z biological_process owl:Class GO:0015747 biolink:NamedThing urate transport The directed movement of urate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl uric acid transport|urate transmembrane transport biological_process owl:Class GO:0060990 biolink:NamedThing lipid tube assembly involved in organelle fission The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in membrane shaping of vesicle membranes as organelles undergo fission. tmpzr1t_l9r_go_relaxed.owl lipid tubulation involved in organelle fission dph 2010-01-11T02:14:48Z biological_process owl:Class GO:0043182 biolink:NamedThing vacuolar sequestering of sodium ion The process of transporting sodium ions into, and confining within, a vacuole. tmpzr1t_l9r_go_relaxed.owl sodium ion (Na+) storage in vacuole|vacuolar sequestration of sodium ion (Na+)|sequestering of sodium ion (Na+) in vacuole|vacuolar sequestering of sodium ion (Na+)|vacuolar sodium ion (Na+) storage|sequestration of sodium ion (Na+) in vacuole|vacuolar sodium ion (Na+) retention|sodium ion (Na+) retention in vacuole biological_process owl:Class GO:0043181 biolink:NamedThing vacuolar sequestering The process of transporting a substance into, and confining within, a vacuole. tmpzr1t_l9r_go_relaxed.owl vacuolar retention|vacuolar sequestration|vacuolar storage|storage in vacuole|retention in vacuole|sequestration in vacuole|sequestering in vacuole biological_process owl:Class GO:1901719 biolink:NamedThing regulation of NMS complex assembly Any process that modulates the frequency, rate or extent of NMS complex assembly. The NMS complex is involved in chromosome segregation. tmpzr1t_l9r_go_relaxed.owl regulation of NMS complex association involved in chromosome segregation|regulation of NMS complex assembly involved in kinetochore assembly|regulation of KMN network assembly involved in chromosome segregation|regulation of KMN complex assembly involved in chromosome segregation jl 2012-12-20T11:44:17Z biological_process owl:Class GO:0018450 biolink:NamedThing myrtenol dehydrogenase activity Catalysis of the reaction: myrtenol + O2 + 2 H+ + 2 e- = 2 H2O + myrtenal. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0710 molecular_function owl:Class GO:0002619 biolink:NamedThing regulation of non-professional antigen presenting cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of non-professional antigen presenting cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010567 biolink:NamedThing regulation of ketone catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a ketone, carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990065 biolink:NamedThing Dxr protein complex A protein complex that is involved in the MEP pathway of IPP biosynthesis. It catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP). tmpzr1t_l9r_go_relaxed.owl 1-deoxy-D-xylulose 5-phosphate reductoisomerase complex bhm 2013-03-27T16:58:54Z cellular_component owl:Class GO:0004846 biolink:NamedThing urate oxidase activity Catalysis of the reaction: urate + O2 + H2O = 5-hydroxyisourate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl urate:oxygen oxidoreductase activity|uricase II activity|uricase activity|uric acid oxidase activity UM-BBD_reactionID:r1322|MetaCyc:URATE-OXIDASE-RXN|EC:1.7.3.3|RHEA:21368 molecular_function owl:Class GO:1904803 biolink:NamedThing regulation of translation involved in cellular response to UV Any regulation of translation that is involved in cellular response to UV. tmpzr1t_l9r_go_relaxed.owl regulation of protein synthesis involved in cellular response to UV|regulation of protein biosynthesis involved in cellular response to UV|regulation of protein anabolism involved in cellular response to UV|regulation of protein formation involved in cellular response to UV|regulation of translation involved in cellular response to ultraviolet radiation stimulus|regulation of translation involved in cellular response to ultraviolet light stimulus|regulation of translation involved in cellular response to UV light stimulus|regulation of translation involved in cellular response to UV radiation stimulus mah 2015-11-10T12:12:41Z biological_process owl:Class GO:0035520 biolink:NamedThing monoubiquitinated protein deubiquitination The removal of the ubiquitin group from a monoubiquitinated protein. tmpzr1t_l9r_go_relaxed.owl monoubiquitinated protein deubiquitinylation|monoubiquitinated protein deubiquitylation bf 2010-05-04T04:28:38Z biological_process owl:Class GO:0070820 biolink:NamedThing tertiary granule A secretory granule that contains cathepsin and gelatinase and is readily exocytosed upon cell activation; found primarily in mature neutrophil cells. tmpzr1t_l9r_go_relaxed.owl gelatinase granule mah 2009-07-20T03:57:00Z cellular_component owl:Class GO:0031482 biolink:NamedThing myosin XII complex A myosin complex containing one or more class XII myosin heavy chains and associated light chains; myosin XII contains a large tail region with two MyTH4 domains and a short region of coiled coil. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050563 biolink:NamedThing trans-feruloyl-CoA synthase activity Catalysis of the reaction: ATP + CoA + trans-ferulate = (E)-feruloyl-CoA + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl trans-feruloyl-CoA synthetase activity|ferulate-CoA ligase activity|trans-ferulate:CoASH ligase (ATP-hydrolysing) EC:6.2.1.34|RHEA:19389|MetaCyc:6.2.1.34-RXN hjd 2020-07-30T15:20:51Z GO:0106287 molecular_function owl:Class GO:0036248 biolink:NamedThing phytochelatin 4 import into vacuole The directed movement of phytochelatin 4 (PC4) into the vacuole. Phytochelatin 4 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=4, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond. tmpzr1t_l9r_go_relaxed.owl PC4 import into vacuole bf 2012-05-31T11:12:08Z biological_process owl:Class GO:1902603 biolink:NamedThing carnitine transmembrane transport The directed movement of carnitine across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2013-12-20T11:09:11Z biological_process owl:Class GO:0098964 biolink:NamedThing anterograde dendritic transport of messenger ribonucleoprotein complex The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites towards the postsynapse. tmpzr1t_l9r_go_relaxed.owl anterograde dendritic transport of mRNA RNP complex biological_process owl:Class GO:0098937 biolink:NamedThing anterograde dendritic transport The directed movement of organelles or molecules along microtubules from the cell body toward the postsynapse in dendrites. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006190 biolink:NamedThing inosine salvage Any process that generates inosine, hypoxanthine riboside, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl adenine, hypoxanthine and their nucleoside salvage|guanine, xanthine and their nucleoside salvage biological_process owl:Class GO:0010245 biolink:NamedThing radial microtubular system formation Formation of radial microtubular systems during male meiotic cytokinesis in plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004447 biolink:NamedThing iodide peroxidase activity Catalysis of the reaction: iodide + hydrogen peroxide = iodine + 2 H2O. tmpzr1t_l9r_go_relaxed.owl thyroid peroxidase activity|TPO activity|thyroperoxidase activity|iodinase activity https://github.com/geneontology/go-ontology/issues/21027 MetaCyc:IODIDE-PEROXIDASE-RXN|EC:1.11.1.8 molecular_function owl:Class GO:0032186 biolink:NamedThing cellular bud neck septin ring organization Control of the formation, spatial distribution, and breakdown of a septin ring located at the bud neck. tmpzr1t_l9r_go_relaxed.owl cellular bud neck septin ring organisation biological_process owl:Class GO:0098763 biolink:NamedThing mitotic cell cycle phase One of the distinct periods or stages into which the mitotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events. tmpzr1t_l9r_go_relaxed.owl This term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation should be to 'regulation of x/y phase transition' or to a process which occurs during the reported phase (e.g. mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0035609 biolink:NamedThing C-terminal protein deglutamylation The removal of a C-terminal, gene-encoded glutamate residue from a protein. tmpzr1t_l9r_go_relaxed.owl protein primary sequence deglutamylation bf 2010-11-18T01:06:00Z biological_process owl:Class GO:0046106 biolink:NamedThing thymine biosynthetic process The chemical reactions and pathways resulting in the formation of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base. tmpzr1t_l9r_go_relaxed.owl thymine formation|thymine anabolism|thymine biosynthesis|thymine synthesis biological_process owl:Class GO:0070481 biolink:NamedThing nuclear-transcribed mRNA catabolic process, non-stop decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon. tmpzr1t_l9r_go_relaxed.owl non-stop decay|non-stop mRNA decay|nuclear-transcribed mRNA catabolism, non-stop decay|nonstop mRNA decay|nuclear-transcribed mRNA breakdown, non-stop decay|nuclear-transcribed mRNA degradation, non-stop decay biological_process owl:Class GO:0032475 biolink:NamedThing otolith formation The process that gives rise to an otolith. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019640 biolink:NamedThing glucuronate catabolic process to xylulose 5-phosphate The chemical reactions and pathways resulting in the breakdown of glucuronate into other compounds, including xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl glucuronate degradation to xylulose 5-phosphate|glucuronate breakdown to xylulose 5-phosphate biological_process owl:Class GO:0060156 biolink:NamedThing milk ejection reflex A reflex that occurs in response to suckling, beginning with a nerve impulse from a receptor in the mammary gland and ending with the ejection of milk from the gland. Signaling never reaches a level of consciousness. tmpzr1t_l9r_go_relaxed.owl milk ejection biological_process owl:Class GO:0034944 biolink:NamedThing 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity Catalysis of the reaction: 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA + NAD+ = 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA + NADH+ + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0986 molecular_function owl:Class GO:0052661 biolink:NamedThing S-lactaldehyde reductase activity Catalysis of the reaction: (S)-propane-1,2-diol + NAD+ = (S)-lactaldehyde + NADH + H+. tmpzr1t_l9r_go_relaxed.owl (S)-propane-1,2-diol:NAD+ oxidoreductase activity|L-lactaldehyde:propanediol oxidoreductase activity MetaCyc:LACTALDREDUCT-RXN|RHEA:15933|KEGG_REACTION:R02258 molecular_function owl:Class GO:0008912 biolink:NamedThing lactaldehyde reductase activity Catalysis of the reaction: propane-1,2-diol + NAD+ = lactaldehyde + NADH + H+. tmpzr1t_l9r_go_relaxed.owl propanediol:nicotinamide adenine dinucleotide (NAD) oxidoreductase activity|(R)- or (S)-propane-1,2-diol:NAD+ oxidoreductase activity|lactaldehyde:propanediol oxidoreductase activity|propanediol oxidoreductase activity EC:1.1.1.77 molecular_function owl:Class GO:0046727 biolink:NamedThing capsomere Any of the protein subunits that comprise the closed shell or coat (capsid) of certain viruses. tmpzr1t_l9r_go_relaxed.owl capsomer Wikipedia:Capsomere cellular_component owl:Class GO:0036354 biolink:NamedThing 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase activity Catalysis of the reaction: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a = bacteriochlorophyllide a + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8787|RHEA:19733 bf 2012-09-19T14:46:31Z molecular_function owl:Class GO:0120065 biolink:NamedThing pyloric antrum smooth muscle contraction A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the widest part of the pylorus that is continuous with the body of the stomach. tmpzr1t_l9r_go_relaxed.owl antrum smooth muscle contraction krc 2017-06-13T22:36:20Z biological_process owl:Class GO:0045794 biolink:NamedThing negative regulation of cell volume Any process that decreases cell volume. tmpzr1t_l9r_go_relaxed.owl RVD|cell regulatory volume decrease biological_process owl:Class GO:0070300 biolink:NamedThing phosphatidic acid binding Binding to phosphatidic acid, any of a class of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. tmpzr1t_l9r_go_relaxed.owl phosphatidate binding molecular_function owl:Class GO:0002438 biolink:NamedThing acute inflammatory response to antigenic stimulus An acute inflammatory response to an antigenic stimulus. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006011 biolink:NamedThing UDP-glucose metabolic process The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucose metabolism biological_process owl:Class GO:0033768 biolink:NamedThing SUMO-targeted ubiquitin ligase complex A nuclear ubiquitin ligase complex that specifically targets SUMOylated proteins; the complex is formed of homodimers or heterodimers of RNF4 family ubiquitin ligases and is conserved in eukaryotes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009641 biolink:NamedThing shade avoidance Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Shade_avoidance biological_process owl:Class GO:0031728 biolink:NamedThing CCR3 chemokine receptor binding Binding to a CCR3 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR3 chemokine receptor ligand|eosinophil eotaxin receptor binding molecular_function owl:Class GO:0150001 biolink:NamedThing primary dendrite A dendrite emerging from the cell body (the soma) of a neuron. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034840 biolink:NamedThing 3-hydroxymenthone dehydrogenase activity Catalysis of the reaction: (5R)-3-hydroxymenthone + NAD+ = mentha-1,3-dione + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1185 molecular_function owl:Class GO:0001785 biolink:NamedThing prostaglandin J receptor activity Combining with prostaglandin J (PGJ(2)), a metabolite of prostaglandin D (PGD(2)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PGJ(2) receptor activity|PGJ receptor activity molecular_function owl:Class GO:0008043 biolink:NamedThing intracellular ferritin complex A ferritin complex located in the cell. Intracellular ferritin complexes contain 24 subunits, in a mixture of L (light) chains and H (heavy) chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051388 biolink:NamedThing positive regulation of neurotrophin TRK receptor signaling pathway Any process that activates or increases the frequency, rate or extent of the neurotrophin TRK receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of nerve growth factor receptor signaling pathway|up regulation of nerve growth factor receptor signaling pathway|stimulation of nerve growth factor receptor signaling pathway|activation of nerve growth factor receptor signaling pathway|positive regulation of NGF receptor signaling pathway|positive regulation of NGF receptor signalling pathway|positive regulation of nerve growth factor receptor signalling pathway|up-regulation of nerve growth factor receptor signaling pathway|positive regulation of nerve growth factor receptor signaling pathway biological_process owl:Class GO:0070691 biolink:NamedThing P-TEFb complex A dimeric positive transcription elongation factor complex b that comprises a cyclin-dependent kinase containing the catalytic subunit, Cdk9, and a regulatory subunit, cyclin T. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent kinase 9 (Cdk9)-cyclin T2 complex|Sgv1/Bur2 complex|dimeric positive transcription elongation factor complex b|Bur1/Bur2 complex|cyclin-dependent kinase 9 (Cdk9)-cyclin T1 complex mah 2009-06-03T03:12:56Z cellular_component owl:Class GO:0008024 biolink:NamedThing cyclin/CDK positive transcription elongation factor complex A transcription elongation factor complex that facilitates the transition from abortive to productive elongation by phosphorylating the CTD domain of the large subunit of DNA-directed RNA polymerase II, holoenzyme. Contains a cyclin and a cyclin-dependent protein kinase catalytic subunit. tmpzr1t_l9r_go_relaxed.owl positive transcription elongation factor complex b See also the cellular component terms 'cyclin-dependent protein kinase activating kinase holoenzyme complex ; GO:0019907' and 'DNA-directed RNA polymerase II, holoenzyme ; GO:0016591'. cellular_component owl:Class GO:0019857 biolink:NamedThing 5-methylcytosine metabolic process The chemical reactions and pathways involving 5-methylcytosine, a methylated base of DNA. tmpzr1t_l9r_go_relaxed.owl 5-methylcytosine metabolism biological_process owl:Class GO:0047517 biolink:NamedThing 1,4-beta-D-xylan synthase activity Catalysis of the reaction: UDP-D-xylose + [(1->4)-beta-D-xylan](n) = UDP + [(1->4)-beta-D-xylan](n+1). tmpzr1t_l9r_go_relaxed.owl xylan synthetase activity|xylan synthase activity|1,4-beta-xylan synthase activity|UDP-D-xylose:1,4-beta-D-xylan 4-beta-D-xylosyltransferase activity|uridine diphosphoxylose-1,4-beta-xylan xylosyltransferase activity RHEA:15289|EC:2.4.2.24|MetaCyc:RXN-9104 molecular_function owl:Class GO:0060752 biolink:NamedThing intestinal phytosterol absorption Any process in which phytosterols are taken up from the contents of the intestine. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:08:43Z biological_process owl:Class GO:0030942 biolink:NamedThing endoplasmic reticulum signal peptide binding Binding to an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl ER signal peptide binding molecular_function owl:Class GO:0140562 biolink:NamedThing EGF-domain serine xylosyltransferase activity Catalyses the reaction: UDP-alpha-D-xylose + [protein with EGF-like domain]-L-serine <=> UDP + [protein with EGF-like domain]-3-O-(beta-D-xylosyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16869 RHEA:62016|EC:2.4.2.63 pg 2020-11-25T14:30:56Z molecular_function owl:Class GO:0006192 biolink:NamedThing IDP phosphorylation The process of introducing a phosphate group into IDP, inosine (5'-)diphosphate, to produce ITP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002271 biolink:NamedThing plasmacytoid dendritic cell activation involved in immune response A change in the morphology or behavior of a plasmacytoid dendritic cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl plasmacytoid dendritic cell activation during immune response biological_process owl:Class GO:1902813 biolink:NamedThing negative regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl down regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|negative regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|inhibition of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|downregulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|down-regulation of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|down-regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|inhibition of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|inhibition of BMP signaling pathway involved in determination of lateral mesoderm left/right asymmetry|downregulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|down regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry|negative regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|down regulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|downregulation of BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination|down-regulation of BMP signalling pathway involved in determination of lateral mesoderm left/right asymmetry mr 2014-03-26T21:18:50Z biological_process owl:Class GO:0098962 biolink:NamedThing regulation of postsynaptic neurotransmitter receptor activity Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030998 biolink:NamedThing linear element A proteinaceous scaffold associated with fission yeast chromosomes during meiotic prophase. Linear elements consist of a protein complex, LinE, with four main structural components (Rec10, Rec25, Rec27, and Mug20 in S. pombe) associated with chromatin. The resulting structure is related to but not equivalent to the synaptonemal complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902501 biolink:NamedThing lysosomal HOPS complex Any HOPS complex that is part of a lysosomal membrane. tmpzr1t_l9r_go_relaxed.owl lysosomal membrane HOPS complex tb 2013-11-14T00:09:59Z cellular_component owl:Class GO:0004345 biolink:NamedThing glucose-6-phosphate dehydrogenase activity Catalysis of the reaction: D-glucose 6-phosphate + NADP+ = D-glucono-1,5-lactone 6-phosphate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl D-glucose-6-phosphate:NADP+ 1-oxidoreductase activity|Zwischenferment|G6PDH|6-phosphoglucose dehydrogenas|glucose 6-phosphate dehydrogenase (NADP) activity|Entner-doudoroff enzyme|glucose-6-phosphate 1-dehydrogenase activity|NADP-glucose-6-phosphate dehydrogenase activity|6-phosphoglucose dehydrogenase activity|D-glucose 6-phosphate dehydrogenase activity|GDH|G6PD activity|NADP-dependent glucose 6-phosphate dehydrogenase activity Reactome:R-HSA-70377|RHEA:15841|MetaCyc:GLU6PDEHYDROG-RXN|EC:1.1.1.49 molecular_function owl:Class GO:0030156 biolink:NamedThing benzodiazepine receptor binding Binding to a peripheral benzodiazepine receptor (PBR). tmpzr1t_l9r_go_relaxed.owl benzodiazepine receptor ligand|diazepam binding inhibitor activity molecular_function owl:Class GO:1903133 biolink:NamedThing negative regulation of tube lumen cavitation Any process that stops, prevents or reduces the frequency, rate or extent of tube lumen cavitation. tmpzr1t_l9r_go_relaxed.owl inhibition of tube lumen cavitation dph 2014-06-25T20:19:04Z biological_process owl:Class GO:0006169 biolink:NamedThing adenosine salvage Any process that generates adenosine, adenine riboside, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl adenine, hypoxanthine and their nucleoside salvage biological_process owl:Class GO:0006166 biolink:NamedThing purine ribonucleoside salvage Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl MetaCyc:P121-PWY biological_process owl:Class GO:0033766 biolink:NamedThing 2-hydroxyquinoline 8-monooxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + quinolin-2-ol = H(2)O + NAD(+) + quinoline-2,8-diol. tmpzr1t_l9r_go_relaxed.owl quinolin-2(1H)-one,NADH:oxygen oxidoreductase (8-oxygenating) activity|2-oxo-1,2-dihydroquinoline 8-monooxygenase activity EC:1.14.13.61|RHEA:22080|MetaCyc:1.14.13.61-RXN|KEGG_REACTION:R05158 molecular_function owl:Class GO:0102560 biolink:NamedThing 5-phospho-alpha-D-ribose 1,2-cyclic phosphate 1-phosphohydrolase activity Catalysis of the reaction: 5-phosphonato-alpha-D-ribose cyclic-1,2-phosphate + H2O <=> D-ribofuranose 2,5-bisphosphate + H+. tmpzr1t_l9r_go_relaxed.owl phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase RHEA:41612|MetaCyc:RXN-14995|EC:3.1.4.57 molecular_function owl:Class GO:0044672 biolink:NamedThing acetyl-CoA decarbonylase/synthase-carbon monoxide dehydrogenase complex A multifunctional enzyme complex composed of five different polypeptides that catalyzes the decarbonylation of acetyl-CoA, cleaves the C-C and C-S bonds in the acetyl moiety of acetyl-CoA, oxidizes the carbonyl group to CO2 and transfers the methyl group to tetrahydrosarcinapterin. These reactions are important for methanogenesis. tmpzr1t_l9r_go_relaxed.owl CODH|carbon-monoxide:(acceptor) oxidoreductase complex|CODH/ACS complex|CO dehydrogenase/acetyl-CoA synthase complex|carbon monoxide dehydrogenase|CO dehydrogenase complex jl 2012-08-08T16:06:03Z cellular_component owl:Class GO:0090517 biolink:NamedThing L-lysine transmembrane import into vacuole The directed movement of L-lysine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar lysine import|lysine transmembrane import into vacuole tb 2012-09-24T14:12:46Z GO:0090456 biological_process owl:Class GO:0106044 biolink:NamedThing guanine deglycation The removal of a sugar or dicarbonyl from a glycated guanine. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-01T18:15:28Z biological_process owl:Class GO:0015296 biolink:NamedThing anion:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: anion(out) + cation(out) = anion(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902285 biolink:NamedThing semaphorin-plexin signaling pathway involved in neuron projection guidance Any semaphorin-plexin signaling pathway that is involved in neuron projection guidance. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signaling pathway involved in neuron protrusion guidance|semaphorin-plexin signalling pathway involved in neuronal cell projection guidance|semaphorin-plexin signaling pathway involved in neuronal cell projection guidance|semaphorin-plexin signalling pathway involved in neuron protrusion guidance|semaphorin-plexin signalling pathway involved in neuron projection guidance|semaphorin-plexin signaling pathway involved in neurite guidance|semaphorin-plexin signaling pathway involved in neuron process guidance|semaphorin-plexin signalling pathway involved in neurite guidance|semaphorin-plexin signalling pathway involved in neuron process guidance pr 2013-07-08T16:06:46Z biological_process owl:Class GO:0075504 biolink:NamedThing macropinosomal membrane permeabilization involved in viral entry into host cell Induction of macropinosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid. Occurs after internalization of the virus in a macropinosome, and results in release of the viral contents from the macropinosome into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via macropinocytosis followed by macropinosomal membrane permeabilization jl 2010-06-02T02:48:36Z biological_process owl:Class GO:0039665 biolink:NamedThing permeabilization of host organelle membrane involved in viral entry into host cell Induction of organellar membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with a viral capsid. Results in release of the virus contents from an organelle into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral membrane-penetration protein|viral penetration via host endosomal membrane disruption by virus|viral penetration via permeabilization of host organellar membrane|viral entry into host cell via permeabilization of host organelle membrane|viral penetration via perforation of host organellar membrane by virus VZ:985 bf 2013-08-29T11:57:21Z biological_process owl:Class GO:0060262 biolink:NamedThing negative regulation of N-terminal protein palmitoylation Any process that decreases the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140102 biolink:NamedThing catalytic activity, acting on a rRNA Catalytic activity that acts to modify a ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14225 pg 2017-09-15T19:00:57Z molecular_function owl:Class GO:0070064 biolink:NamedThing proline-rich region binding Binding to a proline-rich region, i.e. a region that contains a high proportion of proline residues, in a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071902 biolink:NamedThing positive regulation of protein serine/threonine kinase activity Any process that increases the rate, frequency, or extent of protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-15T03:09:57Z biological_process owl:Class GO:0044308 biolink:NamedThing axonal spine A spine that originates from the axon, usually from the initial segment. tmpzr1t_l9r_go_relaxed.owl axon spine NIF_Subcellular:sao18239917 jl 2010-02-05T04:22:13Z cellular_component owl:Class GO:1901186 biolink:NamedThing positive regulation of ERBB signaling pathway Any process that activates or increases the frequency, rate or extent of ERBB signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of ErbB signaling|positive regulation of EGF receptor family signaling pathway|up regulation of ERBB signalling pathway|activation of ERBB signalling pathway|up regulation of ErbB signaling|up regulation of EGF receptor family signaling pathway|upregulation of EGF receptor family signaling pathway|positive regulation of ERBB signalling pathway|activation of ErbB signaling|upregulation of EGFR family signaling pathway|up-regulation of ERBB signaling pathway|up regulation of EGFR family signaling pathway|up regulation of ERBB signaling pathway|activation of EGFR family signaling pathway|positive regulation of ErbB signaling|up-regulation of ErbB signaling|up-regulation of EGFR family signaling pathway|positive regulation of EGFR family signaling pathway|activation of ERBB signaling pathway|up-regulation of ERBB signalling pathway|activation of EGF receptor family signaling pathway|up-regulation of EGF receptor family signaling pathway|upregulation of ERBB signalling pathway|upregulation of ERBB signaling pathway rl 2012-07-24T07:37:43Z biological_process owl:Class GO:0090106 biolink:NamedThing pancreatic E cell fate commitment The commitment of a cell to a pancreatic E cell fate and its capacity to differentiate into a pancreatic E cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-18T11:51:41Z biological_process owl:Class GO:0044161 biolink:NamedThing host cell cytoplasmic vesicle A vesicle formed of membrane or protein, found in the cytoplasm of a host cell. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:22:21Z cellular_component owl:Class GO:0008317 biolink:NamedThing gurken receptor binding Binding to a gurken growth factor receptor. tmpzr1t_l9r_go_relaxed.owl gurken receptor ligand molecular_function owl:Class GO:0005154 biolink:NamedThing epidermal growth factor receptor binding Binding to an epidermal growth factor receptor. tmpzr1t_l9r_go_relaxed.owl epidermal growth factor receptor ligand|EGF receptor binding|transforming growth factor alpha|transforming growth factor alpha receptor binding|epidermal growth factor|EGF receptor ligand|EGF|TGF-alpha receptor binding|EGFR binding|transforming growth factor alpha receptor ligand|TGFalpha receptor binding GO:0008185 molecular_function owl:Class GO:0044655 biolink:NamedThing phagosome reneutralization Any process that increases the pH of the phagosome, measured by the concentration of the hydrogen ion, as part of the process of phagosome maturation. tmpzr1t_l9r_go_relaxed.owl phagosome pH elevation|phagosomal reneutralization jl 2012-07-26T04:21:14Z biological_process owl:Class GO:0051454 biolink:NamedThing intracellular pH elevation Any process that increases the internal pH of a cell, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl intracellular alkalinization|cell pH elevation|cellular alkalinization|elevation of cellular pH|pH elevation in cell biological_process owl:Class GO:0000001 biolink:NamedThing mitochondrion inheritance The distribution of mitochondria, including the mitochondrial genome, into daughter cells after mitosis or meiosis, mediated by interactions between mitochondria and the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl mitochondrial inheritance biological_process owl:Class GO:0048311 biolink:NamedThing mitochondrion distribution Any process that establishes the spatial arrangement of mitochondria between and within cells. tmpzr1t_l9r_go_relaxed.owl positioning of mitochondria|distribution of mitochondria|mitochondrial distribution biological_process owl:Class GO:0035507 biolink:NamedThing regulation of myosin-light-chain-phosphatase activity Any process that modulates the frequency, rate or extent of myosin-light-chain-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:53:38Z biological_process owl:Class GO:0004739 biolink:NamedThing pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. tmpzr1t_l9r_go_relaxed.owl MtPDC (mitochondrial pyruvate dehydogenase complex) activity|pyruvate:lipoamide 2-oxidoreductase (decarboxylating and acceptor-acetylating) activity|pyruvate dehydrogenase (lipoamide) activity|PDH|pyruvate dehydrogenase complex activity|pyruvate:dihydrolipoyllysine-residue acetyltransferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-acetylating) RHEA:19189|EC:1.2.4.1 molecular_function owl:Class GO:0071689 biolink:NamedThing muscle thin filament assembly The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in striated muscle. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T03:54:06Z biological_process owl:Class GO:0015645 biolink:NamedThing fatty acid ligase activity Catalysis of the ligation of a fatty acid to an acceptor, coupled to the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl fatty acyl-coenzyme A synthetase activity|fatty-acid ligase activity|fatty acid CoA ligase activity molecular_function owl:Class GO:0045481 biolink:NamedThing 6-endo-hydroxycineole dehydrogenase activity Catalysis of the reaction: 6-endo-hydroxycineole + NAD(+) = 6-oxocineole + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 6-endo-hydroxycineole:NAD+ 6-oxidoreductase activity RHEA:11736|KEGG_REACTION:R02994|MetaCyc:6-ENDO-HYDROXYCINEOLE-DEHYDROGENASE-RXN|EC:1.1.1.241 molecular_function owl:Class GO:0090700 biolink:NamedThing maintenance of plant organ identity The process in which the identity of a plant organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-29T15:01:08Z biological_process owl:Class GO:0120028 biolink:NamedThing negative regulation of osmosensory signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2017-03-31T15:00:28Z biological_process owl:Class GO:0070307 biolink:NamedThing lens fiber cell development The process whose specific outcome is the progression of a lens fiber cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a lens fiber cell fate. A lens fiber cell is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl lens fibre cell development biological_process owl:Class GO:0016533 biolink:NamedThing protein kinase 5 complex A protein complex that has protein serine/threonine kinase activity; in mammals composed of catalytic subunit CDK5 and regulatory subunits CDK5R1 or CDK5R2. Contrary to its gene symbol, CDK5 is not cyclin-dependent. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase 5 holoenzyme complex cellular_component owl:Class GO:0052703 biolink:NamedThing cellular modified histidine biosynthetic process The chemical reactions and pathways resulting in the formation of compounds derived from histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl cellular modified histidine formation|cellular histidine derivative anabolism|cellular histidine derivative biosynthesis|histidine derivative biosynthetic process|cellular histidine derivative biosynthetic process|cellular modified histidine synthesis|cellular histidine derivative synthesis|cellular histidine derivative formation|cellular modified histidine biosynthesis|cellular modified histidine anabolism ai 2011-08-01T03:49:39Z biological_process owl:Class GO:0070451 biolink:NamedThing cell hair A long, thin cell projection that contains F-actin and tubulin, with microtubules centrally located and F-actin peripherally located. tmpzr1t_l9r_go_relaxed.owl non-sensory hair|imaginal disc-derived wing hair Wikipedia:Membrane_nanotube cellular_component owl:Class GO:0071094 biolink:NamedThing alpha6-beta4 integrin-CD9 complex A protein complex that consists of an alpha6-beta4 integrin complex bound to the cell surface protein CD9. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB4-CD9 complex mah 2009-11-06T04:47:44Z cellular_component owl:Class GO:0001518 biolink:NamedThing voltage-gated sodium channel complex A sodium channel in a cell membrane whose opening is governed by the membrane potential. tmpzr1t_l9r_go_relaxed.owl voltage-dependent sodium channel complex|voltage gated sodium channel complex|voltage-sensitive sodium channel complex NIF_Subcellular:sao785001660 cellular_component owl:Class GO:0002084 biolink:NamedThing protein depalmitoylation The removal of palymitoyl groups from a lipoprotein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046253 biolink:NamedThing anaerobic toluene biosynthetic process The chemical reactions and pathways resulting in the formation of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic toluene synthesis|anaerobic toluene formation|anaerobic toluene biosynthesis|anaerobic toluene anabolism This term was reinstated from obsolete. biological_process owl:Class GO:0018971 biolink:NamedThing anaerobic toluene metabolic process The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic toluene metabolism UM-BBD_pathwayID:tol2 biological_process owl:Class GO:0048838 biolink:NamedThing release of seed from dormancy The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071833 biolink:NamedThing peptide pheromone export involved in positive regulation of conjugation with cellular fusion The directed movement of a peptide pheromone out of a cell by a secretion or export pathway used solely for the export of peptide pheromones that contributes to a conjugation process that results in the union of cellular and genetic information from compatible mating types. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-09T11:09:43Z biological_process owl:Class GO:1901157 biolink:NamedThing neomycin catabolic process The chemical reactions and pathways resulting in the breakdown of neomycin. tmpzr1t_l9r_go_relaxed.owl neomycin catabolism|neomycin degradation|neomycin breakdown yaf 2012-07-17T04:28:20Z biological_process owl:Class GO:0061530 biolink:NamedThing aspartate secretion, neurotransmission The regulated release of aspartate by a cell in which the aspartate acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:50:10Z biological_process owl:Class GO:0008553 biolink:NamedThing P-type proton-exporting transporter activity Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. tmpzr1t_l9r_go_relaxed.owl H+-transporting ATPase|proton-translocating ATPase activity|hydrogen-exporting ATPase activity|hydrogen exporting ATPase activity, phosphorylative mechanism|proton transport ATPase activity|hydrogen-exporting ATPase activity, phosphorylative mechanism|H+-exporting ATPase activity|P-type H(+)-exporting ATPase activity|hydrogen-/sodium-translocating ATPase activity|H(+)-transporting ATPase activity|proton-exporting ATPase activity|proton-exporting ATPase activity, phosphorylative mechanism|proton-transporting ATPase activity RHEA:20852|MetaCyc:3.6.3.6-RXN|EC:7.1.2.1 bf 2013-09-30T16:56:16Z GO:0036442 molecular_function owl:Class GO:0010165 biolink:NamedThing response to X-ray Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz). tmpzr1t_l9r_go_relaxed.owl response to X-ray radiation stimulus biological_process owl:Class GO:0086091 biolink:NamedThing regulation of heart rate by cardiac conduction A cardiac conduction process that modulates the frequency or rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-29T01:04:19Z biological_process owl:Class GO:0140642 biolink:NamedThing meiotic spindle formation (spindle phase two) The spindle organization process in which the spindle is maintained at a constant length during meiotic metaphase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21349 pg 2021-05-11T08:18:16Z biological_process owl:Class GO:0043683 biolink:NamedThing type IV pilus assembly The assembly from its constituent parts of a type IV pilus. tmpzr1t_l9r_go_relaxed.owl type IV fimbriae biogenesis|type IV pilus biogenesis|type IV fimbrium assembly|type IV fimbria assembly|type IV fimbrial assembly|type IV fimbriae assembly|type IV fimbrium biogenesis|type IV fimbria biogenesis|type IV fimbrial biogenesis https://github.com/geneontology/go-ontology/issues/14579 biological_process owl:Class GO:0070405 biolink:NamedThing ammonium ion binding Binding to ammonium ions (NH4+). tmpzr1t_l9r_go_relaxed.owl ammonium binding molecular_function owl:Class GO:0018651 biolink:NamedThing toluene-4-sulfonate monooxygenase activity Catalysis of the reaction: toluene-4-sulfonate + 1/2 O2 + H+ = HSO3(-) + 4-hydroxytoluene. tmpzr1t_l9r_go_relaxed.owl toluene-4-sulphonate monooxygenase activity UM-BBD_reactionID:r0296|EC:1.14.13.- molecular_function owl:Class GO:0021836 biolink:NamedThing chemorepulsion involved in postnatal olfactory bulb interneuron migration The creation and reception of signals that repel olfactory bulb interneurons from the subventricular zone as a component process in tangential migration. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis involved in postnatal olfactory bulb interneuron migration biological_process owl:Class GO:1902052 biolink:NamedThing (25S)-Delta(7)-dafachronate binding Binding to (25S)-Delta(7)-dafachronate. tmpzr1t_l9r_go_relaxed.owl ab 2013-04-11T08:34:38Z molecular_function owl:Class GO:0070728 biolink:NamedThing leucine binding Binding to 2-amino-4-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl Leu binding mah 2009-06-17T03:16:30Z molecular_function owl:Class GO:0060216 biolink:NamedThing definitive hemopoiesis A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood. tmpzr1t_l9r_go_relaxed.owl definitive hematopoiesis|definitive haemopoiesis|definitive haematopoiesis biological_process owl:Class GO:0120283 biolink:NamedThing protein serine/threonine kinase binding Binding to a protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15218 krc 2020-11-17T16:26:36Z molecular_function owl:Class GO:0042864 biolink:NamedThing pyochelin biosynthetic process The chemical reactions and pathways resulting in the formation of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid). tmpzr1t_l9r_go_relaxed.owl pyochelin biosynthetic process, peptide modification|pyochelin synthesis|pyochelin formation|pyochelin biosynthetic process, peptide formation|pyochelin biosynthesis|pyochelin anabolism GO:0031188|GO:0031187 biological_process owl:Class GO:0002902 biolink:NamedThing regulation of B cell apoptotic process Any process that modulates the frequency, rate, or extent of B cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of B cell apoptosis biological_process owl:Class GO:0004961 biolink:NamedThing thromboxane A2 receptor activity Combining with thromboxane A2 (TXA(2)) and transmitting the signal across the membrane to activate an associated G-protein. tmpzr1t_l9r_go_relaxed.owl TXA(2) receptor activity|TXA2 receptor activity molecular_function owl:Class GO:0042210 biolink:NamedThing octamethylcyclotetrasiloxane catabolic process to dimethylsilanediol The anaerobic chemical reactions and pathways resulting in the breakdown of octamethylcyclotetrasiloxane into dimethylsilanediol. The former is a tetramer of the latter. tmpzr1t_l9r_go_relaxed.owl catabolism of octamethylcyclotetrasiloxane to DMSD|octamethylcyclotetrasiloxane degradation to dimethylsilanediol|catabolic process of octamethylcyclotetrasiloxane to DMSD|octamethylcyclotetrasiloxane breakdown to dimethylsilanediol UM-BBD_pathwayID:osi biological_process owl:Class GO:0046454 biolink:NamedThing dimethylsilanediol metabolic process The chemical reactions and pathways involving dimethylsilanediol, the smallest member of the dialkylsilanediols. Dimethylsilanediol is the monomer of polydimethylsiloxane, a compound which can be found in a wide range of industrial and consumer products. tmpzr1t_l9r_go_relaxed.owl dimethylsilanediol metabolism biological_process owl:Class GO:0033729 biolink:NamedThing anthocyanidin reductase activity Catalysis of the reaction: a flavan-3-ol + 2 NAD(P)+ = an anthocyanidin + 2 NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl flavan-3-ol:NAD(P)+ oxidoreductase activity|MtANR|ANR|AtANR MetaCyc:1.3.1.77-RXN|EC:1.3.1.77 molecular_function owl:Class GO:0060867 biolink:NamedThing fruit abscission The controlled shedding of a fruit. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T06:35:28Z biological_process owl:Class GO:0020011 biolink:NamedThing apicoplast The plastid organelle found in apicomplexans. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Apicoplast cellular_component owl:Class GO:0018376 biolink:NamedThing peptidyl-asparagine hydroxylation to form L-erythro-beta-hydroxyasparagine The hydroxylation of peptidyl-asparagine to form peptidyl-L-erythro-beta-hydroxyasparagine; catalyzed by peptide-aspartate beta-dioxygenase (EC:1.14.11.16). tmpzr1t_l9r_go_relaxed.owl RESID:AA0026 See also the molecular function term 'peptide-aspartate beta-dioxygenase activity ; GO:0004597'. biological_process owl:Class GO:0050690 biolink:NamedThing regulation of defense response to virus by virus Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism. tmpzr1t_l9r_go_relaxed.owl regulation of antiviral response by virus|viral regulation of antiviral response|regulation by virus of antiviral response biological_process owl:Class GO:0060513 biolink:NamedThing prostatic bud formation The morphogenetic process in which a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth. tmpzr1t_l9r_go_relaxed.owl prostate gland formation|primary prostate bud formation|prostate ductal budding biological_process owl:Class GO:0061827 biolink:NamedThing sperm head The part of the late spermatid or spermatozoon that contains the nucleus and acrosome. tmpzr1t_l9r_go_relaxed.owl dph 2017-01-15T10:39:00Z cellular_component owl:Class GO:0050001 biolink:NamedThing D-glutaminase activity Catalysis of the reaction: H2O + L-glutamine = NH3 + D-glutamate. tmpzr1t_l9r_go_relaxed.owl D-glutamine amidohydrolase activity RHEA:22840|MetaCyc:D-GLUTAMINASE-RXN|EC:3.5.1.35 molecular_function owl:Class GO:0045303 biolink:NamedThing diaminobutyrate-2-oxoglutarate transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-2,4-diaminobutyrate = L-aspartate 4-semialdehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl DAB aminotransferase activity|EctB|diaminobutyrate transaminase activity|diaminibutyric acid aminotransferase activity|L-2,4-diaminobutyrate:2-oxoglutarate 4-aminotransferase activity|L-2,4-diaminobutanoate:2-oxoglutarate 4-aminotransferase activity|2,4-diaminobutyrate 4-aminotransferase activity|L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase activity|diaminobutyrate--2-oxoglutarate aminotransferase activity|DABA aminotransferase activity EC:2.6.1.76|KEGG_REACTION:R06977|RHEA:11160|MetaCyc:R101-RXN molecular_function owl:Class GO:0000124 biolink:NamedThing SAGA complex A SAGA-type histone acetyltransferase complex that deubiquitinates H2A and/or H2B. This complex is organized into several functional submodules: a structural core including the activator binding module and consisting of ADA1 or a homolog, members of the SPT and TAF protein families as well as promotor recruitment factor TRRAP/TRA1, a histone acetyltransferase (HAT) module consisting of GCN5/KAT2A or PCAF/KAT2B, ADA2, ADA3/NGG1, and SGF29 or homologues thereof, a histone deubiquitinase (DUB) module consisting of ATXN7/SGF73, ATXN7L3/SGF11, ENY2/SUS1 and USP22/UBP8 or homologues thereof, and in some taxa a splicing module consisting of SF3B3 and SF3B5 or homologues thereof (not in fungi). In budding yeast also contains Spt8 which distinguishes it from SAGA-like (SLIK) complex (GO:0046695). tmpzr1t_l9r_go_relaxed.owl STAGA coactivator complex|SPT3-TAF9-GCN5 acetylase complex|PCAF histone acetylase-associated complex|Spt-Ada-Gcn5-acetyltransferase complex|STAGA complex|PCAF complex|SPT3-TAF9-PCAF acetylase complex GO:0000125|GO:0030914 cellular_component owl:Class GO:0070452 biolink:NamedThing positive regulation of ergosterol biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol. tmpzr1t_l9r_go_relaxed.owl positive regulation of ergosterol anabolism|up-regulation of ergosterol biosynthetic process|activation of ergosterol biosynthetic process|positive regulation of ergosterol formation|positive regulation of ergosterol synthesis|upregulation of ergosterol biosynthetic process|up regulation of ergosterol biosynthetic process|positive regulation of ergosterol biosynthesis|stimulation of ergosterol biosynthetic process biological_process owl:Class GO:0046721 biolink:NamedThing formic acid secretion The controlled release of formic acid, HCOOH, by a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl formate secretion biological_process owl:Class GO:0033811 biolink:NamedThing flavonol-3-O-triglucoside O-coumaroyltransferase activity Catalysis of the reaction: 4-coumaroyl-CoA + a flavonol 3-O-[beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside] = CoA + a flavonol 3-O-[6-(4-coumaroyl)-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside]. tmpzr1t_l9r_go_relaxed.owl 4-coumaroyl-CoA:flavonol-3-O-[beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside] 6'''-O-4-coumaroyltransferase activity EC:2.3.1.173|MetaCyc:2.3.1.173-RXN|RHEA:22160 molecular_function owl:Class GO:0035633 biolink:NamedThing maintenance of blood-brain barrier Maintaining the structure and function of the blood-brain barrier, thus ensuring specific regulated transport of substances (e.g. macromolecules, small molecules, ions) into the brain, and out of the brain into the blood circulation. tmpzr1t_l9r_go_relaxed.owl maintenance of BBB|maintenance of blood/brain barrier Homeostasis and maintenance processes are regulatory processes, therefore, regulation child terms, such as: regulation of maintenance of blood-brain barrier, should not exist for these terms. Instead, for capturing regulation at the blood-brain barrier, consider using the part_of child term: regulation of blood-brain barrier permeability. bf 2011-01-07T10:33:11Z biological_process owl:Class GO:1904257 biolink:NamedThing zinc ion import into Golgi apparatus The directed import of zinc(2+) from the cytosol across the Golgi membrane into the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl zinc II ion import across Golgi membrane|zinc ion import into Golgi membrane|zinc ion import across Golgi membrane|zinc(2+) import across Golgi membrane tb 2015-05-20T19:56:18Z biological_process owl:Class GO:0071830 biolink:NamedThing triglyceride-rich lipoprotein particle clearance The process in which a triglyceride-rich lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-08T11:23:55Z biological_process owl:Class GO:0090375 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of iron ions. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter in response to iron deficiency tb 2010-09-01T01:22:23Z biological_process owl:Class GO:0102547 biolink:NamedThing glucosylglycerate hydrolase activity Catalysis of the reaction: H2O + 2-O-(alpha-D-glucopyranosyl)-D-glycerate <=> alpha-D-glucose + D-glycerate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14901|RHEA:32059 molecular_function owl:Class GO:0021855 biolink:NamedThing hypothalamus cell migration The directed movement of a cell into the hypothalamus region of the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032526 biolink:NamedThing response to retinoic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to vitamin A acid biological_process owl:Class GO:0097738 biolink:NamedThing substrate mycelium formation The process by which, in some fungal species, hyphae grow as a network of invasive thread-like filaments formed from chains of attached cells within a solid or semi-solid substrate. tmpzr1t_l9r_go_relaxed.owl pr 2016-10-18T16:21:05Z biological_process owl:Class GO:0009428 biolink:NamedThing bacterial-type flagellum basal body, distal rod, P ring One of the rings of the bacterial-type flagellar basal body; anchors the basal body to the peptidoglycan layer. tmpzr1t_l9r_go_relaxed.owl flagellar basal body, distal rod, P ring|flagellin-based flagellum basal body, distal rod, P ring cellular_component owl:Class GO:0045130 biolink:NamedThing keratan sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + keratan = adenosine 3',5'-bisphosphate + keratan 6'-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylylsulfate:keratan sulfotransferase activity|keratan sulfate sulfotransferase activity|keratan sulfate Gal-6-sulfotransferase activity|3'-phosphoadenylyl-sulfate:keratan 6'-sulfotransferase activity|keratan sulphotransferase activity|3'-phosphoadenylyl keratan sulfotransferase activity EC:2.8.2.21|Reactome:R-HSA-2046175|MetaCyc:KERATAN-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:0007270 biolink:NamedThing neuron-neuron synaptic transmission The process of synaptic transmission from a neuron to another neuron across a synapse. tmpzr1t_l9r_go_relaxed.owl nerve-nerve synaptic transmission biological_process owl:Class GO:0050060 biolink:NamedThing long-chain-alcohol dehydrogenase activity Catalysis of the reaction: a long-chain alcohol + 2 NAD+ + H2O = a long-chain carboxylate + 2 NADH. tmpzr1t_l9r_go_relaxed.owl long-chain alcohol dehydrogenase activity|fatty alcohol oxidoreductase activity|long-chain-alcohol:NAD+ oxidoreductase activity EC:1.1.1.192|MetaCyc:LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN|RHEA:17977 molecular_function owl:Class GO:1900449 biolink:NamedThing regulation of glutamate receptor signaling pathway Any process that modulates the frequency, rate or extent of glutamate receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of glutamate signaling pathway|regulation of glutamate signalling pathway rl 2012-04-27T03:45:43Z biological_process owl:Class GO:0046305 biolink:NamedThing alkanesulfonate biosynthetic process The chemical reactions and pathways resulting in the formation of alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group. tmpzr1t_l9r_go_relaxed.owl alkanesulphonate biosynthetic process|alkanesulphonate biosynthesis|alkanesulfonate formation|alkanesulfonate synthesis|alkanesulfonate anabolism|alkanesulfonate biosynthesis biological_process owl:Class GO:0000255 biolink:NamedThing allantoin metabolic process The chemical reactions and pathways involving allantoin, (2,5-dioxo-4-imidazolidinyl)urea, an intermediate or end product of purine catabolism. tmpzr1t_l9r_go_relaxed.owl allantoin metabolism biological_process owl:Class GO:0060582 biolink:NamedThing cell fate determination involved in pattern specification A process involved in commitment of a cell to a fate in a developmental field. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-07T12:48:08Z biological_process owl:Class GO:0098613 biolink:NamedThing methaneselenol methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + methaneselenol => S-adenosyl-L-homocysteine + dimethyl selenide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408541 molecular_function owl:Class GO:1904074 biolink:NamedThing negative regulation of trophectodermal cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of trophectodermal cell proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of trophectodermal cell proliferation|down-regulation of trophectoderm cell proliferation|downregulation of trophectoderm cell proliferation|inhibition of trophectodermal cell proliferation|down regulation of trophectodermal cell proliferation|downregulation of trophectodermal cell proliferation|inhibition of trophectoderm cell proliferation|negative regulation of trophectoderm cell proliferation|down regulation of trophectoderm cell proliferation tb 2015-03-20T16:56:02Z biological_process owl:Class GO:1903517 biolink:NamedThing negative regulation of single strand break repair Any process that stops, prevents or reduces the frequency, rate or extent of single strand break repair. tmpzr1t_l9r_go_relaxed.owl down regulation of single strand break repair|downregulation of single strand break repair|inhibition of single strand break repair|down-regulation of single strand break repair rl 2014-10-06T10:59:01Z biological_process owl:Class GO:0039706 biolink:NamedThing co-receptor binding Binding to a coreceptor. A coreceptor acts in cooperation with a primary receptor to transmit a signal within the cell. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-25T14:41:42Z molecular_function owl:Class GO:0106211 biolink:NamedThing inositol-5-diphosphate-1,3,4,6-tetrakisphosphate diphosphatase activity Catalysis of the reaction: 5-diphospho-1D-myo-inositol 1,3,4,6-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 5-diphospho-myo-inositol 1,3,4,6-tetrakisphosphate diphosphatase activity|5-PP-InsP4 activity|5-diphosphoinositol 1,3,4,6-tetrakisphosphate diphosphatase activity RHEA:59500 hjd 2019-06-06T19:26:38Z molecular_function owl:Class GO:0052840 biolink:NamedThing inositol diphosphate tetrakisphosphate diphosphatase activity Catalysis of the reaction: inositol diphosphate tetrakisphosphate + H2O = inositol 1,3,4,5,6-pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855166|EC:3.6.1.52|MetaCyc:RXN-10963 ai 2011-11-29T04:14:22Z molecular_function owl:Class GO:1990508 biolink:NamedThing CKM complex Cyclin-dependent kinase complex which reversibly associates with the Mediator complex. In Saccharomyces cerevisiae it consists of SSN2, SSN3, SSN8 and SRB8. tmpzr1t_l9r_go_relaxed.owl CDK8 kinase module|SRB8/9/10/11 complex|SRB8-SRB11 complex An example of this is SSN2 in Saccharomyces cerevisiae (P38931) in PMID:12200444 (inferred from physical interaction). bhm 2014-10-02T10:05:58Z cellular_component owl:Class GO:0019908 biolink:NamedThing nuclear cyclin-dependent protein kinase holoenzyme complex Cyclin-dependent protein kinase (CDK) complex found in the nucleus. tmpzr1t_l9r_go_relaxed.owl CDK holoenzyme cellular_component owl:Class GO:0034270 biolink:NamedThing Cvt complex A protein complex that is involved in the Cvt pathway. In budding yeast, the Cvt complex consists of multimers of preApe1p. tmpzr1t_l9r_go_relaxed.owl cytoplasm to vacuole targeting complex|cytoplasm-to-vacuole targeting complex cellular_component owl:Class GO:0050056 biolink:NamedThing linalool 8-monooxygenase activity Catalysis of the reaction: AH(2) + linalool + O(2) = (2E)-2,6-dimethylocta-2,7-diene-1,6-diol + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3,7-dimethylocta-1,6-dien-3-ol,hydrogen-donor:oxygen oxidoreductase (8-hydroxylating) EC:1.14.14.84|MetaCyc:LINALOOL-8-MONOOXYGENASE-RXN|RHEA:32635|KEGG_REACTION:R04366 molecular_function owl:Class GO:0015919 biolink:NamedThing peroxisomal membrane transport The directed movement of substances to, from or across the peroxisomal membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099614 biolink:NamedThing protein localization to spore cell wall A process in which a protein is transported, tethered to or otherwise maintained in a spore cell wall. tmpzr1t_l9r_go_relaxed.owl protein targeting to spore cell wall biological_process owl:Class GO:0044478 biolink:NamedThing envenomation resulting in positive regulation of platelet aggregation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant activation, maintenance or an increase in the frequency, rate or extent of platelet aggregation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:39:45Z biological_process owl:Class GO:0033939 biolink:NamedThing xylan alpha-1,2-glucuronosidase activity Catalysis of the hydrolysis of alpha-D-(1->2)-(4-O-methyl)glucuronosyl links in the main chain of hardwood xylans. tmpzr1t_l9r_go_relaxed.owl 1,2-alpha-glucuronidase activity|xylan alpha-D-1,2-(4-O-methyl)glucuronohydrolase activity|alpha-(1->2)-glucuronidase activity EC:3.2.1.131|MetaCyc:3.2.1.131-RXN molecular_function owl:Class GO:0061646 biolink:NamedThing positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization Any process that activates or increases the frequency, rate or extent of glutamate secretion in response to membrane depolarization, where glutamate acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2014-10-02T14:18:49Z biological_process owl:Class GO:0045470 biolink:NamedThing R8 cell-mediated photoreceptor organization The regionalization process that coordinates the recruitment and organization of other non-R8 photoreceptors by the R8 photoreceptor. tmpzr1t_l9r_go_relaxed.owl R8-mediated photoreceptor organisation biological_process owl:Class GO:0002174 biolink:NamedThing mammary stem cell proliferation The expansion of a mammary stem cell population by cell division. Mammary stem cells are a source of cells for growth of the mammary gland during puberty and gestation. These cells can give rise to both the luminal and myoepithelial cell types of the gland, and can regenerate the entire organ. tmpzr1t_l9r_go_relaxed.owl hjd 2010-09-14T01:19:45Z biological_process owl:Class GO:0050760 biolink:NamedThing negative regulation of thymidylate synthase biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase. tmpzr1t_l9r_go_relaxed.owl negative regulation of thymidylate synthase formation|negative regulation of thymidylate synthase anabolism|down regulation of thymidylate synthase biosynthetic process|inhibition of thymidylate synthase biosynthetic process|negative regulation of thymidylate synthase biosynthesis|negative regulation of thymidylate synthase synthesis|downregulation of thymidylate synthase biosynthetic process|down-regulation of thymidylate synthase biosynthetic process biological_process owl:Class GO:0061211 biolink:NamedThing mesonephric collecting duct development The process whose specific outcome is the progression of a collecting duct in the mesonephros over time, from its formation to the mature structure. The collecting duct regulates water, electrolyte and acid-base balance. The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:25:51Z biological_process owl:Class GO:0048615 biolink:NamedThing embryonic anterior midgut (ectodermal) morphogenesis The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048613 biolink:NamedThing embryonic ectodermal digestive tract morphogenesis The process, occurring during the embryonic phase, by which the anatomical structures of the ectodermal digestive tract are generated and organized. tmpzr1t_l9r_go_relaxed.owl embryonic ectodermal gut morphogenesis biological_process owl:Class GO:0001923 biolink:NamedThing B-1 B cell differentiation The process in which a hemopoietic stem cell acquires the specialized features of a B-1 B cell. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity. tmpzr1t_l9r_go_relaxed.owl B-1 B cell development|B-1 B lymphocyte differentiation|B-1 B-lymphocyte differentiation|B-1 B-cell differentiation biological_process owl:Class GO:0070897 biolink:NamedThing transcription preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. tmpzr1t_l9r_go_relaxed.owl bacterial-type RNA polymerase preinitiation complex assembly|DNA-templated transcriptional preinitiation complex assembly|transcription PIC biosynthesis|transcriptional preinitiation complex formation|transcription PIC formation|bacterial-type RNA polymerase transcription PIC formation|DNA-dependent transcriptional preinitiation complex assembly|bacterial-type RNA polymerase transcriptional preinitiation complex formation mah 2009-09-01T04:33:47Z GO:0001126 biological_process owl:Class GO:0042717 biolink:NamedThing plasma membrane-derived chromatophore membrane The lipid bilayer associated with a plasma membrane-derived chromatophore; surrounds chromatophores that form complete vesicles. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002080 biolink:NamedThing acrosomal membrane The membrane that surrounds the acrosomal lumen. The acrosome is a special type of lysosome in the head of a spermatozoon that contains acid hydrolases and is concerned with the breakdown of the outer membrane of the ovum during fertilization. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902900 biolink:NamedThing gut granule assembly The aggregation, arrangement and bonding together of a set of components to form a gut granule. tmpzr1t_l9r_go_relaxed.owl gut granule biogenesis|gut granule formation kmv 2014-04-14T14:28:17Z biological_process owl:Class GO:0150201 biolink:NamedThing positive regulation of transport across blood-brain barrier Any process that activates or increases the frequency, rate or extent of transport across blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl bc 2020-03-26T19:26:38Z biological_process owl:Class GO:0075003 biolink:NamedThing adhesion of symbiont appressorium to host The attachment of an appressorium of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont appressorium to host during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21505 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0075016 biolink:NamedThing appressorium formation The process in which a swollen, flattened portion of a symbiont filament is formed on or near its host organism, to adhere to and for the purpose of penetrating the host surface. tmpzr1t_l9r_go_relaxed.owl appressorium formation for entry into host, on or near host|formation of an appressorium by symbiont on or near host|appressorium formation on or near host biological_process owl:Class GO:0034169 biolink:NamedThing positive regulation of toll-like receptor 10 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 10 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 10 signalling pathway|positive regulation of TLR10 signaling pathway biological_process owl:Class GO:0048931 biolink:NamedThing posterior lateral line nerve glial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glial cell in the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000699 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in ureteric bud formation The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to the formation of the ureteric bud from the Wolffian duct. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway of ureteric bud formation|FGF receptor signaling pathway of ureteric bud formation|FGF receptor signalling pathway of ureteric bud formation|FGFR signaling pathway of ureteric bud formation|fibroblast growth factor receptor signaling pathway of ureteric bud formation bf 2011-05-16T04:52:14Z biological_process owl:Class GO:1900824 biolink:NamedThing positive regulation of ergot alkaloid biosynthetic process Any process that activates or increases the frequency, rate or extent of ergot alkaloid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of ergot alkaloid synthesis|upregulation of ergot alkaloid anabolism|up-regulation of ergot alkaloid synthesis|positive regulation of ergot alkaloid synthesis|up regulation of ergot alkaloid biosynthesis|up-regulation of ergot alkaloid biosynthetic process|activation of ergot alkaloid biosynthetic process|up regulation of ergot alkaloid anabolism|positive regulation of ergot alkaloid biosynthesis|up regulation of ergot alkaloid synthesis|up-regulation of ergot alkaloid anabolism|up-regulation of ergot alkaloid biosynthesis|up-regulation of ergot alkaloid formation|activation of ergot alkaloid anabolism|activation of ergot alkaloid biosynthesis|positive regulation of ergot alkaloid anabolism|up regulation of ergot alkaloid formation|upregulation of ergot alkaloid synthesis|upregulation of ergot alkaloid biosynthesis|upregulation of ergot alkaloid biosynthetic process|activation of ergot alkaloid formation|positive regulation of ergot alkaloid formation|up regulation of ergot alkaloid biosynthetic process|upregulation of ergot alkaloid formation di 2012-06-04T11:13:05Z biological_process owl:Class GO:0090206 biolink:NamedThing negative regulation of cholesterol metabolic process Any process that decreases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-23T10:27:37Z biological_process owl:Class GO:0070081 biolink:NamedThing clathrin-sculpted monoamine transport vesicle A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing monoamines. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted monoamine constitutive secretory pathway transport vesicle|clathrin sculpted monoamine transport vesicle cellular_component owl:Class GO:0021887 biolink:NamedThing hypothalamus gonadotrophin-releasing hormone neuron fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a hypothalamus neuron that releases gonadotrophin-releasing hormone. tmpzr1t_l9r_go_relaxed.owl hypothalamus gonadotropin-releasing hormone neuron fate commitment biological_process owl:Class GO:0021886 biolink:NamedThing hypothalamus gonadotrophin-releasing hormone neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron located in the hypothalamus. These neurons release gonadotrophin-releasing hormone as a neural transmitter. tmpzr1t_l9r_go_relaxed.owl hypothalamus gonadotropin-releasing hormone neuron differentiation biological_process owl:Class GO:1901920 biolink:NamedThing peptidyl-tyrosine dephosphorylation involved in activation of protein kinase activity Any peptidyl-tyrosine dephosphorylation that is involved in activation of protein kinase activity. tmpzr1t_l9r_go_relaxed.owl peptidyl-tyrosine dephosphorylation involved in protein kinase activation al 2013-02-15T18:54:53Z biological_process owl:Class GO:0001875 biolink:NamedThing lipopolysaccharide immune receptor activity Combining with a lipopolysaccharide and transmitting the signal across the cell membrane to initiate an innate immune response. Lipopolysaccharides (LPS) are major components of the outer membrane of Gram-negative bacteria, making them prime targets for recognition by the immune system. tmpzr1t_l9r_go_relaxed.owl endotoxin receptor activity|LPS receptor activity|lipopolysaccharide receptor activity molecular_function owl:Class GO:0042407 biolink:NamedThing cristae formation The assembly of cristae, the inwards folds of the inner mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051104 biolink:NamedThing DNA-dependent DNA replication DNA ligation The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA-dependent DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation during DNA-dependent DNA replication|DNA ligation involved in DNA-dependent DNA replication biological_process owl:Class GO:0071211 biolink:NamedThing protein targeting to vacuole involved in autophagy The process of directing proteins towards the vacuole using signals contained within the protein, occurring as part of autophagy, the process in which cells digest parts of their own cytoplasm. tmpzr1t_l9r_go_relaxed.owl protein targeting to autophagosome mah 2009-11-25T02:25:27Z biological_process owl:Class GO:1903488 biolink:NamedThing negative regulation of lactation Any process that stops, prevents or reduces the frequency, rate or extent of lactation. tmpzr1t_l9r_go_relaxed.owl downregulation of lactation|down-regulation of lactation|inhibition of lactation|down regulation of lactation mr 2014-09-24T14:44:22Z biological_process owl:Class GO:0007595 biolink:NamedThing lactation The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young. tmpzr1t_l9r_go_relaxed.owl milk secretion Wikipedia:Lactation biological_process owl:Class GO:0060979 biolink:NamedThing vasculogenesis involved in coronary vascular morphogenesis The differentiation of endothelial cells from progenitor cells that contributes to blood vessel development in the heart, and the de novo formation of blood vessels and tubes. tmpzr1t_l9r_go_relaxed.owl vasculogenesis involved in coronary blood vessel morphogenesis|coronary vasculogenesis dph 2009-10-06T02:19:42Z biological_process owl:Class GO:0000056 biolink:NamedThing ribosomal small subunit export from nucleus The directed movement of a ribosomal small subunit from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl ribosomal small subunit export out of nucleus|40S ribosomal subunit export from nucleus|30S ribosomal subunit export from nucleus|ribosomal small subunit-nucleus export|ribosomal small subunit export from cell nucleus|ribosomal small subunit transport from nucleus to cytoplasm GO:0000058 biological_process owl:Class GO:0090644 biolink:NamedThing age-related resistance An innate immune response that is positively correlated with host plant development. As a plant develops, its innate resistance to pathogenic infections increases. The mechanisms involved in age-related resistance differ in nature or in aspects of regulation from the hypersensitive response (HR), systemic acquired resistance (SAR), or induced systemic resistance (ISR). tmpzr1t_l9r_go_relaxed.owl flowering-induced resistance|mature seedling resistance|adult seedling resistance|developmental resistance|senescence-induced resistance|ontogenic resistance|ARR tb 2015-05-19T10:36:38Z biological_process owl:Class GO:0046606 biolink:NamedThing negative regulation of centrosome cycle Any process that stops, prevents, or reduces the frequency, rate or extent of the centrosome cycle. tmpzr1t_l9r_go_relaxed.owl inhibition of centrosome cycle|down-regulation of centrosome cycle|down regulation of centrosome cycle|downregulation of centrosome cycle biological_process owl:Class GO:0030916 biolink:NamedThing otic vesicle formation The process resulting in the transition of the otic placode into the otic vesicle, a transient embryonic structure formed during development of the vertebrate inner ear. tmpzr1t_l9r_go_relaxed.owl otocyst formation|otocyst biosynthesis biological_process owl:Class GO:0110124 biolink:NamedThing positive regulation of myotube cell migration Any process that activates, maintains or increases the frequency, rate or extent of myotube cell migration. tmpzr1t_l9r_go_relaxed.owl kmv 2018-08-22T21:09:38Z biological_process owl:Class GO:0110122 biolink:NamedThing myotube cell migration The orderly movement of a myotube cell from one site to another, often during the development of a multicellular organism. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate, and fuse. tmpzr1t_l9r_go_relaxed.owl kmv 2018-08-22T20:58:09Z biological_process owl:Class GO:0050652 biolink:NamedThing dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process The elongation of dermatan sulfate proteoglycan chains by alternate addition of N-acetylhexosamine and GlcUA residues to the GAG-protein linkage region tetrasaccharide of dermatan sulfate. tmpzr1t_l9r_go_relaxed.owl dermatan sulfate proteoglycan formation, polysaccharide chain formation|chondroitin sulfate B proteoglycan biosynthesis, polysaccharide chain biosynthesis|dermatan sulfate proteoglycan chain elongation|dermatan sulfate proteoglycan formation, polysaccharide chain biosynthesis|dermatan sulfate proteoglycan synthesis, polysaccharide chain synthesis|dermatan sulfate proteoglycan anabolism, polysaccharide chain anabolism|dermatan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthesis|dermatan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthetic process|chondroitin sulfate B proteoglycan chain elongation|chondroitin sulfate B proteoglycan biosynthesis, polysaccharide chain biosynthetic process biological_process owl:Class GO:0060546 biolink:NamedThing negative regulation of necroptotic process Any process that decreases the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors. tmpzr1t_l9r_go_relaxed.owl negative regulation of necroptosis dph 2009-04-13T01:49:36Z biological_process owl:Class GO:0060128 biolink:NamedThing corticotropin hormone secreting cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a corticotropic hormone secreting cell. An corticotropic hormone secreting cell is a basophil cell of the anterior pituitary that produces corticotropin. tmpzr1t_l9r_go_relaxed.owl corticotrophin hormone secreting cell differentiation|adrenocorticotropic hormone secreting cell differentiation|corticotrope differentiation|adrenocorticotrophic hormone secreting cell differentiation|corticotroph differentiation biological_process owl:Class GO:0034240 biolink:NamedThing negative regulation of macrophage fusion Any process that stops, prevents, or decreases the frequency, rate or extent of macrophage fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034238 biolink:NamedThing macrophage fusion The binding and fusion of a macrophage to one or more other cells to form a multinucleated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000817 biolink:NamedThing COMA complex A kinetochore multiprotein complex that bridges the subunits that are in contact with centromeric DNA and the subunits bound to microtubules during kinetochore assembly. In yeast, consists of Ctf19p, Okp1p, Mcm21p, and Ame1p. tmpzr1t_l9r_go_relaxed.owl Ctf19p-Okp1p-Mcm1p-Ame1p complex https://github.com/geneontology/go-ontology/issues/21126 cellular_component owl:Class GO:0043324 biolink:NamedThing pigment metabolic process involved in developmental pigmentation The chemical reactions and pathways involving biological pigments e.g. melanin, occurring as part of the development of an organ or organism. tmpzr1t_l9r_go_relaxed.owl pigment metabolic process during developmental pigmentation|pigment metabolism during developmental pigmentation biological_process owl:Class GO:0035329 biolink:NamedThing hippo signaling The series of molecular signals mediated by the serine/threonine kinase Hippo or one of its orthologs. In Drosophila, Hippo in complex with the scaffold protein Salvador (Sav), phosphorylates and activates Warts (Wts), which in turn phosphorylates and inactivates the Yorkie (Yki) transcriptional activator. The core fly components hippo, sav, wts and mats are conserved in mammals as STK4/3 (MST1/2), SAV1/WW45, LATS1/2 and MOB1. tmpzr1t_l9r_go_relaxed.owl hippo signaling cascade|hippo signaling pathway|Salvador-Warts-Hippo signaling pathway|hippo signalling cascade|SWH pathway|hippo signal transduction bf 2010-02-26T10:43:33Z biological_process owl:Class GO:0010248 biolink:NamedThing establishment or maintenance of transmembrane electrochemical gradient The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006099 biolink:NamedThing tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl TCA cycle|Krebs cycle|citric acid cycle MetaCyc:P105-PWY|MetaCyc:P42-PWY|MetaCyc:TCA|Wikipedia:Tricarboxylic_acid_cycle biological_process owl:Class GO:0072221 biolink:NamedThing metanephric distal convoluted tubule development The process whose specific outcome is the progression of the metanephric distal convoluted tubule over time, from its formation to the mature structure. The metanephric distal convoluted tubule is the first segment of the metanephric nephron lying just downstream from the loop of Henle, immediately after the macula densa. Among other functions, in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:35:27Z biological_process owl:Class GO:0019226 biolink:NamedThing transmission of nerve impulse The neurological system process in which a signal is transmitted through the nervous system by a combination of action potential propagation and synaptic transmission. tmpzr1t_l9r_go_relaxed.owl conduction of nerve impulse|signal transmission along a neuron biological_process owl:Class GO:0010152 biolink:NamedThing pollen maturation The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034503 biolink:NamedThing protein localization to nucleolar rDNA repeats Any process in which a protein is transported to, or maintained at, the rDNA repeats on a chromosome in the nucleolus. tmpzr1t_l9r_go_relaxed.owl protein localisation to nucleolar rDNA repeats|condensin localization to nucleolar rDNA repeats biological_process owl:Class GO:0051355 biolink:NamedThing proprioception involved in equilibrioception The series of events contributing to equilibrioception by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception plays an important role in the ability of an organism to perceive its orientation with respect to gravity. tmpzr1t_l9r_go_relaxed.owl perception of orientation with respect to gravity by proprioception|equilibrioception by proprioception|proprioception during equilibrioception biological_process owl:Class GO:0015567 biolink:NamedThing alkane transmembrane transporter activity Enables the transfer of alkanes from one side of a membrane to the other. Alkanes are saturated aliphatic hydrocarbon compounds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015895 biolink:NamedThing alkane transport The directed movement of alkanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alkanes are saturated aliphatic hydrocarbon compounds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048850 biolink:NamedThing hypophysis morphogenesis The process in which the anatomical structures of the hypophysis are generated and organized. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands. tmpzr1t_l9r_go_relaxed.owl pituitary gland morphogenesis biological_process owl:Class GO:1900160 biolink:NamedThing plastid DNA packaging Any process in which plastidial DNA and associated proteins are formed into a compact, orderly structure. tmpzr1t_l9r_go_relaxed.owl DNA organization in plastid|DNA organisation in plastid|plastidial DNA packaging bf 2012-03-08T10:51:50Z biological_process owl:Class GO:1903475 biolink:NamedThing mitotic actomyosin contractile ring assembly Any actomyosin contractile ring assembly that is involved in mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl actomyosin contractile ring assembly involved in cytokinesis after mitosis|contractile ring assembly involved in mitotic cytokinesis|cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis vw 2014-09-23T14:42:12Z biological_process owl:Class GO:0061423 biolink:NamedThing positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter resulting in the increased frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-26T12:52:05Z biological_process owl:Class GO:0006814 biolink:NamedThing sodium ion transport The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sodium channel auxiliary protein activity|mitochondrial sodium/calcium ion exchange|sodium/potassium transport|sodium transport|sodium:calcium exchange|sodium:solute transport GO:0006834|GO:0016974 biological_process owl:Class GO:0140528 biolink:NamedThing bilobe structure assembly The assembly and organization of a bilobe structure, a cytoskeletal structure in some kinetoplastid species linking the structures of the ciliary pocket collar and the flagellum attachment zone (aka cilium attachment zone). tmpzr1t_l9r_go_relaxed.owl kinetoplastid flagellar hook complex assembly|bilobe structure formation|bilobe structure biogenesis https://github.com/geneontology/go-ontology/issues/20057 pg 2020-09-30T08:47:39Z biological_process owl:Class GO:0042308 biolink:NamedThing negative regulation of protein import into nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl down regulation of protein import into nucleus|negative regulation of protein import into cell nucleus|down-regulation of protein import into nucleus|downregulation of protein import into nucleus|negative regulation of protein transport from cytoplasm to nucleus|negative regulation of protein-nucleus import|inhibition of protein import into nucleus biological_process owl:Class GO:1901197 biolink:NamedThing positive regulation of calcium-mediated signaling involved in cellular response to calcium ion Any positive regulation of calcium-mediated signaling that is involved in cellular response to calcium ion. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium-mediated signaling involved in response to calcium ion|up regulation of calcium-mediated signaling involved in cellular response to Ca2+ ion|activation of calcium-mediated signaling involved in cellular response to Ca2+ ion|positive regulation of calcium-mediated signalling involved in cellular response to calcium ion|upregulation of calcium-mediated signaling involved in cellular response to Ca2+ ion|positive regulation of calcium-mediated signaling involved in cellular response to Ca2+ ion|activation of calcium-mediated signaling involved in cellular response to calcium ion|stimulation of calcium-mediated signaling involved in cellular response to Ca2+ ion|upregulation of calcium-mediated signaling involved in cellular response to calcium ion|stimulation of calcium-mediated signaling involved in cellular response to calcium ion|positive regulation of calcium-mediated signalling involved in cellular response to Ca2+ ion|up regulation of calcium-mediated signaling involved in cellular response to calcium ion|up-regulation of calcium-mediated signaling involved in cellular response to Ca2+ ion al 2012-07-27T10:57:56Z biological_process owl:Class GO:0051610 biolink:NamedThing serotonin uptake The directed movement of serotonin into a cell, typically presynaptic neurons or glial cells. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems. tmpzr1t_l9r_go_relaxed.owl 5HT uptake|5-hydroxytryptamine uptake|serotonin import|5-HT uptake biological_process owl:Class GO:1905677 biolink:NamedThing regulation of adaptive immune effector response Any process that modulates the frequency, rate or extent of adaptive immune effector response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T22:24:57Z biological_process owl:Class GO:0010607 biolink:NamedThing negative regulation of cytoplasmic mRNA processing body assembly Any process that decreases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990764 biolink:NamedThing myofibroblast contraction The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a myofibroblast. tmpzr1t_l9r_go_relaxed.owl MFB contraction|MF contraction sl 2015-06-09T23:43:09Z biological_process owl:Class GO:0032889 biolink:NamedThing regulation of vacuole fusion, non-autophagic Any process that modulates the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071773 biolink:NamedThing cellular response to BMP stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bone morphogenetic protein (BMP) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to bone morphogenetic protein stimulus mah 2010-08-31T11:04:45Z biological_process owl:Class GO:0002349 biolink:NamedThing histamine production involved in inflammatory response The synthesis or release of histamine following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl histamine production involved in acute inflammatory response biological_process owl:Class GO:0007129 biolink:NamedThing homologous chromosome pairing at meiosis The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Homologous chromosome pairing begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete. tmpzr1t_l9r_go_relaxed.owl chromosomal synapsis|synapsis|chromosomal pairing Wikipedia:Synapsis biological_process owl:Class GO:0035550 biolink:NamedThing urease complex A multiprotein nickel-containing complex that possesses urease activity (catalysis of the hydrolysis of urea to ammonia and carbon dioxide). tmpzr1t_l9r_go_relaxed.owl Eukaryotic microorganisms, plants, and probably Gram-positive bacteria, possess a homopolymeric urease. In contrast, urease complexes from gram-negative bacteria studied thus far clearly possess three distinct subunits (alpha, beta and gamma). Tightly bound nickel is present in all urease complexes. bf 2010-05-12T01:00:27Z cellular_component owl:Class GO:0071769 biolink:NamedThing mycolate cell wall layer assembly The aggregation, arrangement and bonding together of a set of components, including arabinogalactan mycolate and trehalose dimycolate, to form the mycolate layer of the Actinobacterium-type cell wall. The mycolate layer is physically attached to the peptidoglycan layer. tmpzr1t_l9r_go_relaxed.owl mycolate cell wall layer biogenesis MetaCyc:PWY-6397 mah 2010-03-29T04:40:45Z biological_process owl:Class GO:0032178 biolink:NamedThing medial membrane band A sterol-rich region of the plasma membrane which forms at the cell surface overlying the contractile ring and spreads into the invaginating plasma membrane surrounding the septum. tmpzr1t_l9r_go_relaxed.owl sterol-rich membrane band cellular_component owl:Class GO:0032153 biolink:NamedThing cell division site The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles. tmpzr1t_l9r_go_relaxed.owl cell division plane Note that this term refers to the future site of division in a cell that has not yet divided. cellular_component owl:Class GO:0039536 biolink:NamedThing negative regulation of RIG-I signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) RIG-1 (also known as DDX58) binding to viral RNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of retinoic acid inducible gene I signaling pathway|negative regulation of RIG-I signalling pathway|negative regulation of DDX58 signaling pathway bf 2012-01-03T11:27:51Z biological_process owl:Class GO:0035494 biolink:NamedThing SNARE complex disassembly The disaggregation of the SNARE protein complex into its constituent components. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-26T02:54:17Z biological_process owl:Class GO:0001992 biolink:NamedThing regulation of systemic arterial blood pressure by vasopressin The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by vasopressin|vasopressin control of blood pressure biological_process owl:Class GO:0014032 biolink:NamedThing neural crest cell development The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070124 biolink:NamedThing mitochondrial translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein in a mitochondrion. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA. tmpzr1t_l9r_go_relaxed.owl mitochondrial translation initiation biological_process owl:Class GO:0030325 biolink:NamedThing adrenal gland development The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells. tmpzr1t_l9r_go_relaxed.owl interrenal gland biological_process owl:Class GO:0038112 biolink:NamedThing interleukin-8-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-8 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-8-mediated signaling pathway|interleukin-8-mediated signalling pathway bf 2012-03-22T10:19:59Z biological_process owl:Class GO:0021647 biolink:NamedThing vestibulocochlear nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the vestibulocochlear nerve to attain its fully functional state. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea. tmpzr1t_l9r_go_relaxed.owl CN VIII maturation|auditory nerve maturation biological_process owl:Class GO:0021562 biolink:NamedThing vestibulocochlear nerve development The process whose specific outcome is the progression of the vestibulocochlear nerve over time, from its formation to the mature structure. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea. tmpzr1t_l9r_go_relaxed.owl cranial nerve 8 development|cranial nerve VIII development|CN VIII development|acoustic nerve development biological_process owl:Class GO:0002611 biolink:NamedThing negative regulation of plasmacytoid dendritic cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of plasmacytoid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl down-regulation of plasmacytoid dendritic cell antigen processing and presentation|down regulation of plasmacytoid dendritic cell antigen processing and presentation|downregulation of plasmacytoid dendritic cell antigen processing and presentation|inhibition of plasmacytoid dendritic cell antigen processing and presentation biological_process owl:Class GO:0048914 biolink:NamedThing myelination of anterior lateral line nerve axons The formation of compact myelin sheaths around the axons of the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048940 biolink:NamedThing anterior lateral line nerve glial cell morphogenesis involved in differentiation The process in which the structures of a glial cell in the anterior lateral line nerve are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a glial cell in the anterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900164 biolink:NamedThing nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry A series of molecular signals initiated by the binding of a nodal protein to an activin receptor on the surface of a target cell, which contributes to the establishment of lateral mesoderm with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry|nodal signaling pathway of determination of left/right asymmetry in lateral mesoderm|nodal signaling of determination of left/right asymmetry in lateral mesoderm bf 2012-03-08T02:58:39Z biological_process owl:Class GO:1904819 biolink:NamedThing parietal peritoneum development The process whose specific outcome is the progression of a parietal peritoneum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl peritoneal cavity lining development dph 2015-11-17T19:00:24Z biological_process owl:Class GO:1904820 biolink:NamedThing peritoneum development The process whose specific outcome is the progression of a peritoneum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl peritonaeum development dph 2015-11-18T17:23:51Z biological_process owl:Class GO:0035516 biolink:NamedThing oxidative DNA demethylase activity Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O(2) = a nucleobase within DNA + formaldehyde + succinate + CO(2). tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate-dependent DNA demethylase|N1-methyladenine demethylase activity|1-ethyladenine demethylase activity|N3-methylcytosine demethylase activity https://github.com/geneontology/go-ontology/issues/21159 RHEA:30299|MetaCyc:RXN0-985|MetaCyc:RXN0-986|MetaCyc:RXN0-984|EC:1.14.11.33 bf 2010-04-30T02:38:16Z GO:0103051|GO:0103052|GO:0103053 molecular_function owl:Class GO:0035511 biolink:NamedThing oxidative DNA demethylation Removal of the methyl group from one or more nucleotides within a DNA molecule involving the oxidation (i.e. electron loss) of one or more atoms. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T02:22:44Z biological_process owl:Class GO:0090232 biolink:NamedThing positive regulation of spindle checkpoint Any process that increases the rate, frequency, or extent of the spindle checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl spindle checkpoint activation tb 2010-01-20T10:29:43Z biological_process owl:Class GO:0031577 biolink:NamedThing spindle checkpoint signaling A signaling process that that controls a cell cycle checkpoint that originates from the mitotic or meiotic spindle. tmpzr1t_l9r_go_relaxed.owl spindle checkpoint|signal transduction involved in spindle checkpoint https://github.com/geneontology/go-ontology/issues/20935 Wikipedia:Spindle_checkpoint Note that this term should not be used for direct manual annotation as it should always be possible to choose either a mitotic or meiotic child term. GO:0072416 biological_process owl:Class GO:0032623 biolink:NamedThing interleukin-2 production The appearance of interleukin-2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL-2 production|interleukin-2 secretion|interleukin-2 biosynthetic process GO:0042094|GO:0070970 biological_process owl:Class GO:0071714 biolink:NamedThing icosanoid transmembrane transporter activity Enables the transfer of icosanoids from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl eicosanoid transmembrane transporter activity mah 2010-03-10T01:50:08Z molecular_function owl:Class GO:0035263 biolink:NamedThing genital disc sexually dimorphic development The sex-specific patterns of primoridia growth and differentiation in the genital imaginal disc. The anal primordium of the genital disc develops in both sexes, but depending on the genetic sex gives rise to either male or female analia. Depending on the genetic sex, only one of the two genital primordia develop. In females the female genital primordium develops and gives rise to the female genitalia whereas the male primordium is repressed. Conversely, in males the male genital primordium develops and gives rise to the male genitalia whereas the female genital primordium is repressed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035215 biolink:NamedThing genital disc development Progression of the genital imaginal disc over time, from its initial formation through to its metamorphosis to form the adult terminalia, comprising the entire set of internal and external genitalia and analia. Both sexes of Drosophila have a single genital disc formed from the female and male genital primordia, and the anal primordium. The anal primordium develops in both sexes, forming either male or female analia. However, only one of the genital primordia develops in each sex, forming either the male or the female genitalia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034179 biolink:NamedThing regulation of toll-like receptor 13 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 13 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 13 signalling pathway|regulation of TLR13 signaling pathway biological_process owl:Class GO:0001713 biolink:NamedThing ectodermal cell fate determination The cell fate determination process that results in a cell becoming capable of differentiating autonomously into an ectoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl ectoderm cell fate determination biological_process owl:Class GO:0001712 biolink:NamedThing ectodermal cell fate commitment The cell differentiation process that results in commitment of a cell to become part of the ectoderm. tmpzr1t_l9r_go_relaxed.owl ectoderm cell fate commitment biological_process owl:Class GO:0045053 biolink:NamedThing protein retention in Golgi apparatus The retention of proteins within the Golgi apparatus. Golgi-localized carbohydrate-modifying enzymes have a short N-terminal domain that faces the cytosol, a single transmembrane alpha helix, and a large C-terminal domain that faces the Golgi lumen and that contains the catalytic site. How the membrane-spanning alpha helix in a Golgi enzyme causes its localization and prevents its movement to the plasma membrane is not known. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location in Golgi apparatus|protein-Golgi retention|retention of protein in Golgi biological_process owl:Class GO:0034067 biolink:NamedThing protein localization to Golgi apparatus A process in which a protein is transported to, or maintained in, a location within the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization to Golgi|establishment of protein localization in Golgi|establishment of protein localisation to Golgi|establishment of protein localization to Golgi apparatus|protein localisation in Golgi apparatus|protein-Golgi targeting|protein localization in Golgi apparatus|protein targeting to Golgi mah 2011-02-14T02:26:36Z GO:0072600|GO:0000042 biological_process owl:Class GO:1902988 biolink:NamedThing neurofibrillary tangle assembly The aggregation, arrangement and bonding together of a set of components to form a neurofibrillary tangle. tmpzr1t_l9r_go_relaxed.owl neurofibrillary tangle formation|flame-shaped neurofibrillary tangle assembly|star-shaped neurofibrillary tangle assembly|star-shaped neurofibrillary tangle formation|flame-shaped neurofibrillary tangle formation Neurofibrillary tangles have been found in aging population; their formation is increased in Alzheimer's disease patients (and in other neurological diseases) compared to normal controls (see PMID:848276 and PMID:8584267). sjp 2014-05-08T09:19:51Z biological_process owl:Class GO:0140659 biolink:NamedThing cytoskeletal motor regulator activity Binds to and modulates the activity of a motor protein. tmpzr1t_l9r_go_relaxed.owl motor activity regulator activity https://github.com/geneontology/go-ontology/issues/21627|https://github.com/geneontology/go-ontology/issues/21756 pg 2021-06-16T11:16:00Z molecular_function owl:Class GO:1905561 biolink:NamedThing positive regulation of kinetochore assembly Any process that activates or increases the frequency, rate or extent of kinetochore assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of centromere/kinetochore complex maturation|upregulation of kinetochore assembly|positive regulation of chromosome-kinetochore attachment|up regulation of centromere and kinetochore complex maturation|up-regulation of centromere/kinetochore complex maturation|upregulation of kinetochore formation|up-regulation of chromosome-kinetochore attachment|activation of centromere and kinetochore complex maturation|up regulation of kinetochore assembly|activation of chromosome-kinetochore attachment|positive regulation of kinetochore formation|up regulation of kinetochore formation|upregulation of chromosome-kinetochore attachment|up-regulation of centromere and kinetochore complex maturation|activation of kinetochore formation|activation of centromere/kinetochore complex maturation|positive regulation of centromere/kinetochore complex maturation|positive regulation of centromere and kinetochore complex maturation|up-regulation of kinetochore formation|upregulation of centromere and kinetochore complex maturation|up regulation of chromosome-kinetochore attachment|activation of kinetochore assembly|up-regulation of kinetochore assembly|upregulation of centromere/kinetochore complex maturation hbye 2016-10-14T13:47:45Z biological_process owl:Class GO:0097083 biolink:NamedThing vascular associated smooth muscle cell fate determination The process in which a cell becomes capable of differentiating autonomously into a vascular smooth muscle cell regardless of its environment; upon determination, the cell fate cannot be reversed. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell fate determination pr 2011-06-20T04:00:28Z biological_process owl:Class GO:0061276 biolink:NamedThing mesonephric proximal tubule morphogenesis The process in which the anatomical structures of a mesonephric proximal tubule are generated and organized. The mesonephric proximal tubule extends from the capsule to the distal tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:11:02Z biological_process owl:Class GO:0097484 biolink:NamedThing dendrite extension Long distance growth of a single dendrite involved in cellular development. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-08T09:52:31Z biological_process owl:Class GO:0023019 biolink:NamedThing signal transduction involved in regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression as a consequence of a process in which a signal is released and/or conveyed from one location to another. tmpzr1t_l9r_go_relaxed.owl regulation of gene expression as a consequence of signal transmission 2010-02-16T09:30:50Z biological_process owl:Class GO:0034457 biolink:NamedThing Mpp10 complex A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p. tmpzr1t_l9r_go_relaxed.owl Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:2000820 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation Any negative regulation of transcription from RNA polymerase II promoter that is involved in smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of global transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|negative regulation of transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|negative regulation of transcription from Pol II promoter involved in smooth muscle cell differentiation|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|down regulation of transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|negative regulation of transcription from RNA polymerase II promoter, global involved in nonstriated muscle cell differentiation|down regulation of global transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|inhibition of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|downregulation of transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|downregulation of global transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|inhibition of global transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|down-regulation of global transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|downregulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|down regulation of global transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|down-regulation of transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|inhibition of transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|negative regulation of global transcription from Pol II promoter involved in nonstriated muscle cell differentiation|negative regulation of transcription from Pol II promoter involved in nonstriated muscle cell differentiation|downregulation of global transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|negative regulation of global transcription from Pol II promoter involved in smooth muscle cell differentiation|down-regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|inhibition of global transcription from RNA polymerase II promoter involved in nonstriated muscle cell differentiation|down regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation|negative regulation of transcription from RNA polymerase II promoter, global involved in smooth muscle cell differentiation bf 2011-07-14T08:25:05Z biological_process owl:Class GO:0070262 biolink:NamedThing peptidyl-serine dephosphorylation The removal of phosphoric residues from peptidyl-O-phospho-L-serine to form peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903590 biolink:NamedThing regulation of lysozyme activity Any process that modulates the frequency, rate or extent of lysozyme activity. tmpzr1t_l9r_go_relaxed.owl regulation of PR1-lysozyme|regulation of lysozyme g|regulation of N,O-diacetylmuramidase activity|regulation of globulin G|regulation of L-7001|regulation of peptidoglycan N-acetylmuramoylhydrolase activity|regulation of mucopeptide N-acetylmuramoylhydrolase activity|regulation of mucopeptide glucohydrolase activity|regulation of globulin G1|regulation of 1,4-N-acetylmuramidase activity|regulation of muramidase activity mr 2014-11-05T21:41:22Z biological_process owl:Class GO:0097422 biolink:NamedThing tubular endosome A network of fine tubules in the vicinity of the Golgi complex and around the centriole. tmpzr1t_l9r_go_relaxed.owl coated tip NIF_Subcellular:sao694815499|NIF_Subcellular:sao1570660411 pr 2012-11-07T13:36:26Z cellular_component owl:Class GO:0034493 biolink:NamedThing melanosome lumen The volume enclosed by the melanosome membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042470 biolink:NamedThing melanosome A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Melanosome cellular_component owl:Class GO:0033687 biolink:NamedThing osteoblast proliferation The multiplication or reproduction of osteoblasts, resulting in the expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021728 biolink:NamedThing inferior reticular formation development The process whose specific outcome is the progression of the inferior reticular formation over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060402 biolink:NamedThing calcium ion transport into cytosol The directed movement of calcium ions (Ca2+) into the cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001985 biolink:NamedThing negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure Any process that stops, prevents, or reduces the frequency, rate or extent of heart contraction as a result of the baroreceptor response to increased blood pressure. tmpzr1t_l9r_go_relaxed.owl downregulation of heart contraction rate in baroreceptor response to increased blood pressure|down-regulation of heart contraction rate in baroreceptor response to increased blood pressure|down regulation of heart contraction rate in baroreceptor response to increased blood pressure|negative regulation of heart contraction rate in baroreceptor response to increased blood pressure|negative regulation of cardiac contraction rate in baroreceptor response to increased blood pressure|inhibition of heart contraction rate in baroreceptor response to increased blood pressure|negative control of heart contraction rate in baroreceptor response to increased blood pressure biological_process owl:Class GO:0042412 biolink:NamedThing taurine biosynthetic process The chemical reactions and pathways resulting in the formation of taurine (2-aminoethanesulfonic acid), a sulphur-containing amino acid derivative important in the metabolism of fats. tmpzr1t_l9r_go_relaxed.owl taurine synthesis|taurine anabolism|taurine biosynthesis|taurine formation biological_process owl:Class GO:0072539 biolink:NamedThing T-helper 17 cell differentiation The process in which a relatively unspecialized T cell acquires the specialized features of a T-helper 17 (Th17) cell. A Th17 cell is a CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive that produces IL-17. tmpzr1t_l9r_go_relaxed.owl T-helper 17 cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. mah 2011-01-17T11:18:47Z biological_process owl:Class GO:0061227 biolink:NamedThing pattern specification involved in mesonephros development Any developmental process that results in the creation of defined areas or spaces within the mesonephros to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl mesonephros pattern specification|mesonephros pattern formation dph 2010-08-19T02:22:22Z biological_process owl:Class GO:0097653 biolink:NamedThing unencapsulated part of cell The part of a cell encompassing the intracellular environment and the plasma membrane; it excludes any external encapsulating structures. tmpzr1t_l9r_go_relaxed.owl non-encapsulated part of cell pr 2014-09-23T12:57:14Z cellular_component owl:Class GO:0060435 biolink:NamedThing bronchiole development The biological process whose specific outcome is the progression of a bronchiole from an initial condition to its mature state. This process begins with the formation of the bronchiole and ends with the mature structure. A bronchiole is the first airway branch that no longer contains cartilage; it is a branch of the bronchi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903198 biolink:NamedThing regulation of L-dopa decarboxylase activity Any process that modulates the frequency, rate or extent of L-dopa decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl regulation of DDC activity|regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|regulation of DOPA decarboxylase activity bf 2014-07-21T09:32:31Z biological_process owl:Class GO:0031209 biolink:NamedThing SCAR complex A pentameric complex that includes orthologues of human PIR121, Nap1, Abi, SCAR, and HSPC300 and regulates actin polymerization and/or depolymerization through small GTPase mediated signal transduction. tmpzr1t_l9r_go_relaxed.owl WAVE complex|WAVE regulatory complex|WRC cellular_component owl:Class GO:0033292 biolink:NamedThing T-tubule organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of the T-tubule. A T-tubule is an invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. tmpzr1t_l9r_go_relaxed.owl T-tubule organization and biogenesis|T-tubule organisation|transverse tubule organization biological_process owl:Class GO:0032797 biolink:NamedThing SMN complex A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus. tmpzr1t_l9r_go_relaxed.owl survival motor neuron complex|SMN core complex Note that a larger complex containing Sm proteins and other subunits is also sometimes referred to as the 'SMN complex'. The larger complex is represented by 'SMN-Sm protein complex ; GO:0034719'. cellular_component owl:Class GO:0075226 biolink:NamedThing encysted zoospore germination The physiological, developmental and morphological changes that occur in an encysted zoospore, that germinates by developing a germ tube that may penetrate the host directly or indirectly through an appressorium. An encysted zoospore is a zoospore which has shed its flagellum and whose membrane has fused to form a walled cyst. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl encysted zoospore germination on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0060308 biolink:NamedThing GTP cyclohydrolase I regulator activity Binds to and modulates the activity of GTP cyclohydrolase I. GTP cyclohydrolase I activity catalyzes the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044549 biolink:NamedThing GTP cyclohydrolase binding Binding to a GTP cyclohydrolase. tmpzr1t_l9r_go_relaxed.owl GTP cyclohydrolase I binding jl 2012-03-22T04:38:14Z GO:0043106 molecular_function owl:Class GO:0071722 biolink:NamedThing detoxification of arsenic-containing substance Any process that reduces or removes the toxicity of compounds containing arsenic, including arsenates, arsenites, and arsenides. These include transport of such compounds away from sensitive areas and to compartments or complexes whose purpose is sequestration of arsenic or arsenic-containing compounds. tmpzr1t_l9r_go_relaxed.owl detoxification of arsenic mah 2010-03-17T01:35:56Z biological_process owl:Class GO:0007300 biolink:NamedThing ovarian nurse cell to oocyte transport Transfer of constituents synthesized in the ovarian nurse cells to the oocyte, through the ring canals, as the egg chamber is growing. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl nurse cell to oocyte transport biological_process owl:Class GO:0003342 biolink:NamedThing proepicardium development The progression of the proepicardium from its formation to the mature structure. The proepicardium is an outpouching of the septum transversum. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T10:30:17Z biological_process owl:Class GO:0036092 biolink:NamedThing phosphatidylinositol-3-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylinositol-3-phosphate, a phosphatidylinositol monophosphate carrying the phosphate group at the 3-position. tmpzr1t_l9r_go_relaxed.owl PtdIns3P biosynthesis|phosphatidylinositol-3-phosphate formation|PI(3)P biosynthesis|phosphatidylinositol-3-phosphate synthesis|phosphatidylinositol-3-phosphate anabolism|phosphatidylinositol-3-phosphate biosynthesis bf 2012-01-13T02:13:57Z biological_process owl:Class GO:0005275 biolink:NamedThing amine transmembrane transporter activity Enables the transfer of amines, including polyamines, from one side of a membrane to the other. Amines are organic compounds that are weakly basic in character and contain an amino (-NH2) or substituted amino group. tmpzr1t_l9r_go_relaxed.owl amine/polyamine transmembrane transporter activity|amino acid-polyamine transmembrane transporter activity|amine/amide/polyamine channel activity GO:0005279 molecular_function owl:Class GO:1904243 biolink:NamedThing negative regulation of pancreatic trypsinogen secretion Any process that stops, prevents or reduces the frequency, rate or extent of pancreatic trypsinogen secretion. tmpzr1t_l9r_go_relaxed.owl downregulation of pancreatic trypsinogen secretion|negative regulation of pancreatic trypsinogen release|inhibition of pancreatic trypsinogen secretion|down regulation of pancreatic trypsinogen release|inhibition of pancreatic trypsinogen release|down regulation of pancreatic trypsinogen secretion|downregulation of pancreatic trypsinogen release|down-regulation of pancreatic trypsinogen secretion|down-regulation of pancreatic trypsinogen release sl 2015-05-18T19:49:27Z biological_process owl:Class GO:0002492 biolink:NamedThing peptide antigen assembly with MHC class Ib protein complex The binding of a peptide antigen to the antigen binding groove of an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072233 biolink:NamedThing metanephric thick ascending limb development The process whose specific outcome is the progression of the metanephric thick ascending limb over time, from its formation to the mature structure. The metanephric thick ascending limb is the last part of the metanephric loop of Henle. Its thick, mitochondria-rich epithelium characterizes the outer medulla, and is responsible for very avid active salt transport. At the macula densa, the thick ascending limb connects to the distal convoluted tubule. tmpzr1t_l9r_go_relaxed.owl metanephric TAL development mah 2010-03-18T03:39:36Z biological_process owl:Class GO:0098999 biolink:NamedThing extrinsic component of postsynaptic endosome membrane The component of the postsynaptic endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090057 biolink:NamedThing root radial pattern formation The radial pattern formation process that results in the formation of the different tissues of the root around its radial axis. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-11T02:58:06Z biological_process owl:Class GO:0098028 biolink:NamedThing virus tail, shaft The tube of the non-contractile tails of some viruses. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail shaft This term applies in particular to the Siphoviridae bacteriophages, where the shaft is the channel for DNA translocation into the host cytoplasm. bm 2012-07-19T14:24:28Z cellular_component owl:Class GO:1990379 biolink:NamedThing lipid transport across blood-brain barrier The directed movement of lipid molecules passing through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl lipid transport across blood brain barrier sjp 2014-05-08T09:52:28Z biological_process owl:Class GO:0045733 biolink:NamedThing acetate catabolic process The chemical reactions and pathways resulting in the breakdown of acetate, the anion of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate catabolism|homoacetate catabolic process|acetate breakdown|acetate degradation GO:0019663 biological_process owl:Class GO:1900144 biolink:NamedThing positive regulation of BMP secretion Any process that activates or increases the frequency, rate or extent of BMP secretion. tmpzr1t_l9r_go_relaxed.owl up-regulation of BMP secretion|up regulation of BMP protein secretion|up-regulation of bone morphogenetic protein secretion|positive regulation of bone morphogenetic protein secretion|upregulation of BMP secretion|upregulation of bone morphogenetic protein secretion|activation of bone morphogenetic protein secretion|positive regulation of BMP protein secretion|up-regulation of BMP protein secretion|upregulation of BMP protein secretion|activation of BMP secretion|up regulation of bone morphogenetic protein secretion|activation of BMP protein secretion|up regulation of BMP secretion sart 2012-03-06T10:31:47Z biological_process owl:Class GO:0070963 biolink:NamedThing positive regulation of neutrophil mediated killing of gram-negative bacterium Any process that increases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl activation of neutrophil mediated killing of gram-negative bacterium|up regulation of neutrophil mediated killing of gram-negative bacterium|upregulation of neutrophil mediated killing of gram-negative bacterium|up-regulation of neutrophil mediated killing of gram-negative bacterium|stimulation of neutrophil mediated killing of gram-negative bacterium mah 2009-10-01T02:28:49Z biological_process owl:Class GO:0010006 biolink:NamedThing Toc complex Protein translocon complex at the chloroplast outer membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900322 biolink:NamedThing negative regulation of maltotetraose transport Any process that stops, prevents or reduces the frequency, rate or extent of maltotetraose transport. tmpzr1t_l9r_go_relaxed.owl down regulation of maltotetraose transport|downregulation of maltotetraose transport|down-regulation of maltotetraose transport|inhibition of maltotetraose transport tt 2012-04-06T01:45:45Z biological_process owl:Class GO:2000251 biolink:NamedThing positive regulation of actin cytoskeleton reorganization Any process that activates or increases the frequency, rate or extent of actin cytoskeleton reorganization. tmpzr1t_l9r_go_relaxed.owl positive regulation of actin cytoskeleton remodeling|positive regulation of actin cytoskeleton reorganisation vk 2010-11-11T01:25:32Z biological_process owl:Class GO:0009531 biolink:NamedThing secondary cell wall A plant cell wall that is no longer able to expand and so does not permit growth. Secondary cell walls contain less pectin that primary cell walls. The secondary cell is mostly composed of cellulose and is strengthened with lignin. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Secondary_cell_wall cellular_component owl:Class GO:0000354 biolink:NamedThing cis assembly of pre-catalytic spliceosome Assembly of a spliceosomal complex containing the intact pre-mRNA and all of the spliceosomal snRNPs. This occurs when the tri-snRNP associates with the pre-mRNA and associated snRNPs in an ATP-dependent manner. tmpzr1t_l9r_go_relaxed.owl cis assembly of U12-type pre-catalytic spliceosome|spliceosomal B1 complex formation|spliceosomal A2-1 complex biosynthesis|spliceosomal B1 complex biosynthesis|cis assembly of U2-type pre-catalytic spliceosome|formation of spliceosomal B1 complex|formation of spliceosomal A2-1 complex|spliceosomal A2-1 complex formation Note that this step represents formation of the A2-1 complex (yeast) or the B1 complex (mammals). GO:0000361|GO:0000360 biological_process owl:Class GO:0031251 biolink:NamedThing PAN complex A complex that possesses poly(A)-specific ribonuclease activity; catalyzes the message-specific shortening of mRNA poly(A) tails. Contains at least two subunits, known as Pan2p and Pan3p in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl poly(A) nuclease complex cellular_component owl:Class GO:0031470 biolink:NamedThing carboxysome An organelle consisting of a proteinaceous coat and enzymes for the fixation of CO(2). It augments the concentration of CO(2) in the vicinity of RuBisCO to increase the efficiency of CO(2) fixation under atmospheric conditions. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19743 Wikipedia:Carboxysome cellular_component owl:Class GO:0070617 biolink:NamedThing negative regulation of thiamine diphosphate biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine diphosphate. tmpzr1t_l9r_go_relaxed.owl down regulation of thiamine diphosphate biosynthetic process|negative regulation of thiamine diphosphate biosynthesis|negative regulation of thiamine diphosphate anabolism|inhibition of thiamine diphosphate biosynthetic process|negative regulation of thiamine diphosphate formation|downregulation of thiamine diphosphate biosynthetic process|negative regulation of thiamin diphosphate biosynthetic process|down-regulation of thiamine diphosphate biosynthetic process|negative regulation of thiamine diphosphate synthesis mah 2009-04-29T03:39:48Z biological_process owl:Class GO:0043616 biolink:NamedThing keratinocyte proliferation The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032626 biolink:NamedThing interleukin-22 production The appearance of interleukin-22 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl ILTIF production|ZCYTO18 production|IL22 production|interleukin-22 biosynthetic process|interleukin-22 secretion|IL-22 production GO:0042239|GO:0072620 biological_process owl:Class GO:0098921 biolink:NamedThing retrograde trans-synaptic signaling by endocannabinoid Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an endocannabinoid ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005021 biolink:NamedThing vascular endothelial growth factor-activated receptor activity Combining with a vascular endothelial growth factor (VEGF) and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl VEGF receptor activity|VEGF-A-activated receptor activity|VEGF-E-activated receptor activity|VEGF-B-activated receptor activity|vascular endothelial growth factor E-activated receptor activity|VEGF-D-activated receptor activity|VEGF-C-activated receptor activity|VEGF-activated receptor activity|VEGFR activity|vascular endothelial growth factor receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand VEGF. For receptors that bind other growth factors, consider annotating to terms under 'transmembrane signaling receptor activity ; GO:0004888. GO:0036328|GO:0036330|GO:0036326|GO:0036327|GO:0036329 molecular_function owl:Class GO:0031443 biolink:NamedThing fast-twitch skeletal muscle fiber contraction A process in which force is generated within fast-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fast-twitch skeletal muscle is characterized by fast time parameters, high force development and fatiguability. tmpzr1t_l9r_go_relaxed.owl fast-twitch skeletal muscle fibre contraction|fast-twitch skeletal fiber contraction|fast-twitch skeletal myofibre contraction|fast-twitch skeletal myofiber contraction|fast-twitch skeletal fibre contraction biological_process owl:Class GO:0016562 biolink:NamedThing protein import into peroxisome matrix, receptor recycling The process in which peroxisome targeting sequence receptors dissociates from cargo proteins and are returned to the cytosol. tmpzr1t_l9r_go_relaxed.owl peroxisome matrix protein import, receptor recycling|protein transport into peroxisome matrix, receptor recycling|receptor recycling during protein transport into peroxisome matrix|PTS receptor recycling|receptor recycling during peroxisome matrix protein import|peroxisome receptor recycling|receptor recycling during protein import into peroxisome matrix biological_process owl:Class GO:1901459 biolink:NamedThing positive regulation of response to acetate Any process that activates or increases the frequency, rate or extent of response to acetate. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to acetate|up regulation of response to acetate|activation of response to acetate|upregulation of response to acetate tt 2012-10-02T14:26:34Z biological_process owl:Class GO:0006634 biolink:NamedThing hexadecanal biosynthetic process The chemical reactions and pathways resulting in the formation of hexadecanal, the C16 straight chain aldehyde. tmpzr1t_l9r_go_relaxed.owl hexadecanal formation|palmitaldehyde biosynthetic process|hexadecanal biosynthesis|palmitaldehyde biosynthesis|hexadecanal anabolism|hexadecanal synthesis biological_process owl:Class GO:0042884 biolink:NamedThing microcin transport The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019073 biolink:NamedThing viral DNA genome packaging The packing of viral DNA into a capsid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035235 biolink:NamedThing ionotropic glutamate receptor signaling pathway A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl ionotropic glutamate receptor signalling pathway biological_process owl:Class GO:0050674 biolink:NamedThing urothelial cell proliferation The multiplication or reproduction of urothelial cells, resulting in the expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038162 biolink:NamedThing erythropoietin-mediated signaling pathway A series of molecular signals initiated by the binding of erythropoietin (EPO) to the erythropoietin receptor (EPO-R) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl EPO-R signaling pathway|erythropoietin receptor signaling pathway bf 2012-05-14T02:28:38Z biological_process owl:Class GO:0021842 biolink:NamedThing chemorepulsion involved in interneuron migration from the subpallium to the cortex The creation and reception of signals that result in the movement of interneurons away from the signal during migration from the subpallium to the cortex. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis involved in interneuron migration from the subpallium to the cortex biological_process owl:Class GO:0003839 biolink:NamedThing gamma-glutamylcyclotransferase activity Catalysis of the reaction: (5-L-glutamyl)-L-amino acid = 5-oxoproline + L-amino acid. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyl-amino acid cyclotransferase activity|(5-L-glutamyl)-L-amino-acid 5-glutamyltransferase (cyclizing)|L-glutamic cyclase activity|gamma-L-glutamylcyclotransferase activity Reactome:R-HSA-6785928|RHEA:20505|Reactome:R-HSA-1247922|EC:4.3.2.9|MetaCyc:GAMMA-GLUTAMYLCYCLOTRANSFERASE-RXN molecular_function owl:Class GO:0043867 biolink:NamedThing 7-cyano-7-deazaguanine tRNA-ribosyltransferase activity Catalysis of the reaction: tRNA guanine + 7-cyano-7-deazaguanine = tRNA 7-cyano-7-deazaguanine + guanine. tmpzr1t_l9r_go_relaxed.owl archaeosine tRNA-ribosyltransferase activity|archaeal tRNA-guanine transglycosylase activity|TgtA molecular_function owl:Class GO:1900096 biolink:NamedThing negative regulation of dosage compensation by inactivation of X chromosome Any process that stops, prevents or reduces the frequency, rate or extent of dosage compensation, by inactivation of X chromosome. tmpzr1t_l9r_go_relaxed.owl negative regulation of chromosome inactivation|down regulation of dosage compensation, by inactivation of X chromosome|negative regulation of X chromosome inactivation|down regulation of chromosome inactivation|downregulation of dosage compensation, by inactivation of X chromosome|down-regulation of X chromosome inactivation|downregulation of Barr body formation|down regulation of X chromosome inactivation|down-regulation of chromosome inactivation|inhibition of Barr body formation|downregulation of chromosome inactivation|inhibition of X chromosome inactivation|downregulation of X chromosome inactivation|inhibition of chromosome inactivation|inhibition of dosage compensation, by inactivation of X chromosome|down-regulation of Barr body formation|down regulation of Barr body formation|down-regulation of dosage compensation, by inactivation of X chromosome|negative regulation of Barr body formation hjd 2012-02-14T07:29:49Z biological_process owl:Class GO:0034469 biolink:NamedThing Golgi stack lumen The volume enclosed by any of the membranes of the thin, flattened cisternae that form the central portion of the Golgi complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090611 biolink:NamedThing ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide, via the multivesicular body (MVB) sorting pathway; proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation. This process is independent of ubiquitination. tmpzr1t_l9r_go_relaxed.owl tb 2014-10-23T15:27:12Z biological_process owl:Class GO:0007039 biolink:NamedThing protein catabolic process in the vacuole The chemical reactions and pathways resulting in the breakdown of a protein in the vacuole, usually by the action of vacuolar proteases. tmpzr1t_l9r_go_relaxed.owl vacuolar protein degradation|vacuolar protein breakdown|vacuolar protein catabolism|vacuolar protein catabolic process biological_process owl:Class GO:0005892 biolink:NamedThing acetylcholine-gated channel complex A homo- or hetero-pentameric protein complex that forms a transmembrane channel through which ions may pass in response to acetylcholine binding. tmpzr1t_l9r_go_relaxed.owl nicotinic acetylcholine receptor|nicotinic acetylcholine-gated receptor-channel complex cellular_component owl:Class GO:2000550 biolink:NamedThing negative regulation of B cell chemotaxis Any process that stops, prevents or reduces the frequency, rate or extent of B cell chemotaxis. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T07:25:59Z biological_process owl:Class GO:0004867 biolink:NamedThing serine-type endopeptidase inhibitor activity Binds to and stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. tmpzr1t_l9r_go_relaxed.owl serine protease inhibitor activity|serine proteinase inhibitor activity|serpin activity Reactome:R-HSA-159005|Reactome:R-HSA-159001|Reactome:R-HSA-158800|Reactome:R-HSA-158795|Reactome:R-HSA-158893 molecular_function owl:Class GO:2001076 biolink:NamedThing positive regulation of metanephric ureteric bud development Any process that activates or increases the frequency, rate or extent of metanephric ureteric bud development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-14T01:11:15Z biological_process owl:Class GO:0003202 biolink:NamedThing endocardial cushion to mesenchymal transition involved in cardiac skeleton development A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will give rise to the cardiac skeleton. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:39:57Z biological_process owl:Class GO:0021735 biolink:NamedThing dentate nucleus development The process whose specific outcome is the progression of the dentate nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045463 biolink:NamedThing R8 cell development The process whose specific outcome is the progression of the R8 photoreceptor over time, from its formation to the mature structure. The R8 photoreceptor is the founding receptor of each ommatidium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060574 biolink:NamedThing intestinal epithelial cell maturation The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-06T08:10:41Z biological_process owl:Class GO:0098545 biolink:NamedThing maintenance of protein complex location in cytoplasm Any process in which a protein complex is maintained in a specific location within the cytoplasm and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl dos 2013-11-15T20:49:15Z biological_process owl:Class GO:0031613 biolink:NamedThing nuclear proteasome regulatory particle, lid subcomplex The subunits that form the peripheral lid of the regulatory particle of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031598 biolink:NamedThing nuclear proteasome regulatory particle The regulatory subcomplex of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035218 biolink:NamedThing leg disc development Progression of the leg imaginal disc over time, from its initial formation through to its metamorphosis to form adult structures including the leg, coxa and ventral thoracic pleura. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003334 biolink:NamedThing keratinocyte development The process whose specific outcome is the progression of a keratinocyte over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-24T08:55:57Z biological_process owl:Class GO:0010315 biolink:NamedThing auxin efflux The process involved in the transport of auxin out of the cell. tmpzr1t_l9r_go_relaxed.owl auxin export biological_process owl:Class GO:0044339 biolink:NamedThing canonical Wnt signaling pathway involved in osteoblast differentiation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signalling pathway involved in osteoblast differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|canonical Wnt-activated signaling pathway involved in osteoblast differentiation jl 2010-08-20T03:52:11Z biological_process owl:Class GO:0035242 biolink:NamedThing protein-arginine omega-N asymmetric methyltransferase activity Catalysis of the addition of a second methyl group to methylated peptidyl-arginine. Methylation is on the same terminal nitrogen (omega nitrogen) residue that was previously methylated, resulting in asymmetrical peptidyl-N(omega),N(omega)-dimethylated arginine residues. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:[protein]-L-arginine N-methyltransferase ([protein]-Nomega,Nomega-dimethyl-L-arginine-forming)|type I PRMT activity|type I protein arginine methyltransferase activity RHEA:48096|EC:2.1.1.319|RESID:AA0069|RESID:AA0068 Note that type I protein arginine N-methyltransferase enzymes possess 'protein-arginine omega-N monomethyltransferase activity ; GO:0035241' and 'protein-arginine omega-N asymmetric methyltransferase activity ; GO:0035242'. molecular_function owl:Class GO:0019919 biolink:NamedThing peptidyl-arginine methylation, to asymmetrical-dimethyl arginine The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl peptidyl-arginine methylation, to unsymmetrical-dimethyl arginine RESID:AA0068|RESID:AA0069 biological_process owl:Class GO:0001621 biolink:NamedThing G protein-coupled ADP receptor activity Combining with ADP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl K101 receptor|ADP-activated nucleotide receptor activity|ADP-activated adenosine receptor activity|platelet ADP receptor activity|ADP receptor activity GO:0045032 molecular_function owl:Class GO:0039547 biolink:NamedThing suppression by virus of host TRAF activity Any process in which a virus stops, prevents, or reduces the activity of a host TRAF (tumor necrosis factor receptor-associated factor) protein. TRAFs are intracellular signal transducers that lie downstream of receptors including RIG-I, MDA-5 and Toll-like receptors (TLR) and transfer the signal to other intracellular signaling components. tmpzr1t_l9r_go_relaxed.owl inhibition of host TRAFs by virus This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-01-19T03:12:15Z biological_process owl:Class GO:0007504 biolink:NamedThing larval fat body development The process whose specific outcome is the progression of the larval fat body over time, from its formation to the mature structure. The larval fat body consists of a bilaterally symmetrical monolayer of cells lying between the gut and the muscles of the body wall. As in other tissues of the larva, the cells of the fat body complete their divisions in the embryo and increase in size and ploidy during larval life. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904170 biolink:NamedThing regulation of bleb assembly Any process that modulates the frequency, rate or extent of bleb assembly. tmpzr1t_l9r_go_relaxed.owl regulation of cell blebbing als 2015-04-23T09:32:19Z biological_process owl:Class GO:0000245 biolink:NamedThing spliceosomal complex assembly The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. tmpzr1t_l9r_go_relaxed.owl spliceosome assembly biological_process owl:Class GO:0010458 biolink:NamedThing exit from mitosis The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl mitotic exit|exit from mitotic division biological_process owl:Class GO:0061180 biolink:NamedThing mammary gland epithelium development The process whose specific outcome is the progression of the mammary gland epithelium over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. tmpzr1t_l9r_go_relaxed.owl breast epithelium development dph 2010-07-14T08:18:24Z biological_process owl:Class GO:0032909 biolink:NamedThing regulation of transforming growth factor beta2 production Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2. tmpzr1t_l9r_go_relaxed.owl regulation of transforming growth factor-beta2 production|regulation of TGF-B2 production|regulation of TGFB2 production biological_process owl:Class GO:0045781 biolink:NamedThing negative regulation of cell budding Any process that stops, prevents, or reduces the frequency, rate or extent of cell budding. tmpzr1t_l9r_go_relaxed.owl down regulation of cell budding|downregulation of cell budding|negative regulation of budding|inhibition of cell budding|down-regulation of cell budding biological_process owl:Class GO:0051906 biolink:NamedThing maintenance of pigment granule location Any process in which a pigment granule is maintained in a location and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of pigment granule localization biological_process owl:Class GO:1905251 biolink:NamedThing epidermal growth factor receptor signaling pathway involved in heart process Any epidermal growth factor receptor signaling pathway that is involved in heart process. tmpzr1t_l9r_go_relaxed.owl ERBB1 signaling pathway involved in heart process|EGF receptor signaling pathway involved in cardiac process|EGF receptor signalling pathway involved in cardiac process|epidermal growth factor receptor signalling pathway involved in cardiac process|EGF receptor signalling pathway involved in heart process|EGFR signaling pathway involved in heart process|epidermal growth factor receptor signalling pathway involved in heart process|receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process|EGFR signaling pathway involved in cardiac process|ERBB1 signaling pathway involved in cardiac process|receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process|epidermal growth factor receptor signaling pathway involved in cardiac process|EGF receptor signaling pathway involved in heart process bc 2016-06-10T09:20:54Z biological_process owl:Class GO:0044644 biolink:NamedThing envenomation resulting in negative regulation of complement activation, alternative pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant negative regulation of complement activation via the alternative pathway in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-11T12:35:11Z biological_process owl:Class GO:0005068 biolink:NamedThing transmembrane receptor protein tyrosine kinase adaptor activity The binding activity of a molecule that brings together a transmembrane receptor protein tyrosine kinase and one or more other molecules, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase docking protein activity|transmembrane receptor protein tyrosine kinase adaptor protein activity GO:0005069 molecular_function owl:Class GO:0003024 biolink:NamedThing baroreceptor detection of decreased arterial stretch The series of events by which a decrease in diameter of an artery is detected and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904908 biolink:NamedThing negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion, telomeric. tmpzr1t_l9r_go_relaxed.owl down-regulation of maintenance of mitotic sister chromatin cohesion at telomere|down regulation of maintenance of sister chromatin cohesion at telomere at mitosis|down regulation of maintenance of mitotic sister chromatid cohesion, telomeric|inhibition of maintenance of mitotic sister chromatin cohesion at telomere|downregulation of maintenance of sister chromatin cohesion at telomere at mitosis|inhibition of maintenance of sister chromatin cohesion at telomere at mitosis|downregulation of maintenance of telomeric mitotic sister chromatin cohesion|negative regulation of maintenance of mitotic sister chromatin cohesion at telomere|negative regulation of maintenance of telomeric mitotic sister chromatin cohesion|down-regulation of maintenance of sister chromatin cohesion at telomere at mitosis|down regulation of maintenance of telomeric mitotic sister chromatin cohesion|downregulation of maintenance of mitotic sister chromatid cohesion, telomeric|down-regulation of maintenance of mitotic sister chromatid cohesion, telomeric|inhibition of maintenance of mitotic sister chromatid cohesion, telomeric|down regulation of maintenance of mitotic sister chromatin cohesion at telomere|downregulation of maintenance of mitotic sister chromatin cohesion at telomere|down-regulation of maintenance of telomeric mitotic sister chromatin cohesion|inhibition of maintenance of telomeric mitotic sister chromatin cohesion|negative regulation of maintenance of sister chromatin cohesion at telomere at mitosis rph 2016-01-19T10:30:36Z biological_process owl:Class GO:0000239 biolink:NamedThing pachytene The cell cycle phase which follows zygotene during prophase I of meiosis, and during which crossing over occurs between a chromatid in one partner and another chromatid in the homologous chromosome. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Pachytene|Wikipedia:Meiosis#Pachytene Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0009359 biolink:NamedThing type II site-specific deoxyribonuclease complex A protein complex that functions as an endonuclease to cleave DNA at or near a specific recognition site, when that site is unmethylated. These complexes may be dimers or tetramers; it is also possible for the endonuclease to be in a complex with the corresponding methyltransferase that methylates the recognition site. DNA restriction systems such as this are used by bacteria to defend against phage and other foreign DNA that may enter a cell. tmpzr1t_l9r_go_relaxed.owl type II restriction enzyme complex cellular_component owl:Class GO:0004902 biolink:NamedThing granulocyte colony-stimulating factor receptor activity Combining with granulocyte colony-stimulating factor (G-CSF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G-CSF receptor activity|granulocyte colony stimulating factor receptor activity|CSF3R GO:0030524 molecular_function owl:Class GO:0038158 biolink:NamedThing granulocyte colony-stimulating factor signaling pathway A series of molecular signals initiated by the binding of the cytokine granulocyte colony-stimulating factor (G-CSF) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. G-CSF binds to the receptor (CSF3R). tmpzr1t_l9r_go_relaxed.owl granulocyte colony-stimulating factor signalling pathway|CSF3 signaling pathway|granulocyte colony-stimulating factor receptor signaling pathway|G-CSF receptor signaling pathway|G-CSF signaling pathway bf 2012-05-14T01:30:28Z biological_process owl:Class GO:0050946 biolink:NamedThing positive regulation of xanthophore differentiation Any process that activates or increases the frequency, rate or extent of xanthophore differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of xanthophore differentiation|stimulation of xanthophore differentiation|activation of xanthophore differentiation|up-regulation of xanthophore differentiation|upregulation of xanthophore differentiation Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. biological_process owl:Class GO:2000204 biolink:NamedThing negative regulation of ribosomal large subunit export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of ribosomal large subunit export from nucleus. tmpzr1t_l9r_go_relaxed.owl negative regulation of ribosomal large subunit export from cell nucleus|negative regulation of 60S ribosomal subunit export from nucleus|negative regulation of ribosomal large subunit-nucleus export|negative regulation of ribosomal large subunit transport from nucleus to cytoplasm|negative regulation of ribosomal large subunit export out of nucleus|negative regulation of 50S ribosomal subunit export from nucleus mah 2010-10-26T10:52:39Z biological_process owl:Class GO:1904861 biolink:NamedThing excitatory synapse assembly The aggregation, arrangement and bonding together of a set of components to form an excitatory synapse. tmpzr1t_l9r_go_relaxed.owl excitatory synapse formation bf 2015-12-17T10:31:26Z biological_process owl:Class GO:0002043 biolink:NamedThing blood vessel endothelial cell proliferation involved in sprouting angiogenesis The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population contributing to sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl blood vessel endothelial cell proliferation during sprouting angiogenesis biological_process owl:Class GO:0014839 biolink:NamedThing myoblast migration involved in skeletal muscle regeneration The process in which a myoblast migrates along an entire fiber to the site of injury. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl mononucleate cell migration involved in skeletal muscle regeneration biological_process owl:Class GO:0042466 biolink:NamedThing chemokinesis A response by a motile cell to a soluble chemical that involves an increase or decrease in speed (positive or negative orthokinesis) or of frequency of movement or a change in the frequency or magnitude of turning behavior (klinokinesis). tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chemokinesis biological_process owl:Class GO:0048932 biolink:NamedThing myelination of posterior lateral line nerve axons The formation of compact myelin sheaths around the axons of the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048942 biolink:NamedThing posterior lateral line nerve glial cell morphogenesis involved in differentiation The process in which the structures of a glial cell in the posterior lateral line nerve are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a glial cell in the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060174 biolink:NamedThing limb bud formation The process pertaining to the initial formation of a limb bud from unspecified parts. This process begins with the formation of a local condensation of mesenchyme cells within the prospective limb field, and ends when a limb bud is recognizable. tmpzr1t_l9r_go_relaxed.owl limbbud formation|limb formation biological_process owl:Class GO:0035108 biolink:NamedThing limb morphogenesis The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping. tmpzr1t_l9r_go_relaxed.owl limb bud morphogenesis biological_process owl:Class GO:0070092 biolink:NamedThing regulation of glucagon secretion Any process that modulates the frequency, rate or extent of the regulated release of glucagon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036241 biolink:NamedThing glutamate catabolic process to 4-hydroxybutyrate The chemical reactions and pathways resulting in the breakdown of glutamate into 4-hydroxybutyrate. tmpzr1t_l9r_go_relaxed.owl glutamate degradation to 4-hydroxybutyrate In the catabolism of glutamate in mammals, succinate semialdehyde is converted to succinate (see GO:0006540). Plants can utilize an alternative route, converting succinic semialdehyde to 4-hydroxybutyrate using gamma-hydroxybutyrate dehydrogenase. bf 2012-05-23T02:17:05Z biological_process owl:Class GO:0047577 biolink:NamedThing 4-hydroxybutyrate dehydrogenase activity Catalysis of the reaction: 4-hydroxybutanoate + NAD(+) = H(+) + NADH + succinate semialdehyde. tmpzr1t_l9r_go_relaxed.owl gamma-hydroxybutyrate dehydrogenase activity|4-hydroxybutanoate:NAD+ oxidoreductase activity MetaCyc:4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN|EC:1.1.1.61|RHEA:23948|KEGG_REACTION:R01644 molecular_function owl:Class GO:0002089 biolink:NamedThing lens morphogenesis in camera-type eye The process in which the anatomical structures of the lens are generated and organized. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl lens morphogenesis|lens morphogenesis in camera-style eye biological_process owl:Class GO:0045466 biolink:NamedThing R7 cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of the R7 photoreceptor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905618 biolink:NamedThing positive regulation of miRNA-mediated gene silencing by inhibition of translation Any process that activates or increases the frequency, rate or extent of miRNA-mediated gene silencing by inhibition of translation. tmpzr1t_l9r_go_relaxed.owl up-regulation of inhibition of translation involved in gene silencing by miRNA|up-regulation of miRNA-mediated gene silencing, negative regulation of translation|up-regulation of miRNA mediated inhibition of translation|positive regulation of gene silencing by miRNA, negative regulation of translation|activation of down-regulation of translation involved in gene silencing by miRNA|positive regulation of miRNA-mediated gene silencing, negative regulation of translation|upregulation of down regulation of translation involved in gene silencing by miRNA|up regulation of down regulation of translation involved in gene silencing by miRNA|activation of inhibition of translation involved in gene silencing by miRNA|positive regulation of miRNA mediated inhibition of translation|activation of gene silencing by miRNA, negative regulation of translation|up regulation of gene silencing by miRNA, negative regulation of translation|positive regulation of downregulation of translation involved in gene silencing by miRNA|up regulation of miRNA-mediated gene silencing, negative regulation of translation|upregulation of miRNA-mediated gene silencing, negative regulation of translation|upregulation of negative regulation of translation involved in gene silencing by microRNA|up-regulation of downregulation of translation involved in gene silencing by miRNA|up-regulation of down regulation of translation involved in gene silencing by miRNA|up-regulation of gene silencing by miRNA, negative regulation of translation|up regulation of downregulation of translation involved in gene silencing by miRNA|up-regulation of down-regulation of translation involved in gene silencing by miRNA|upregulation of gene silencing by miRNA, negative regulation of translation|up-regulation of negative regulation of translation involved in gene silencing by microRNA|upregulation of inhibition of translation involved in gene silencing by miRNA|up regulation of negative regulation of translation involved in gene silencing by microRNA|activation of negative regulation of translation involved in gene silencing by microRNA|positive regulation of negative regulation of translation involved in gene silencing by microRNA|up regulation of miRNA mediated inhibition of translation|positive regulation of down regulation of translation involved in gene silencing by miRNA|positive regulation of down-regulation of translation involved in gene silencing by miRNA|upregulation of downregulation of translation involved in gene silencing by miRNA|upregulation of miRNA mediated inhibition of translation|activation of down regulation of translation involved in gene silencing by miRNA|positive regulation of inhibition of translation involved in gene silencing by miRNA|activation of miRNA-mediated gene silencing, negative regulation of translation|activation of miRNA mediated inhibition of translation|up regulation of down-regulation of translation involved in gene silencing by miRNA|up regulation of inhibition of translation involved in gene silencing by miRNA|activation of downregulation of translation involved in gene silencing by miRNA|upregulation of down-regulation of translation involved in gene silencing by miRNA https://github.com/geneontology/go-ontology/issues/22389 bc 2016-10-28T11:48:04Z biological_process owl:Class GO:0021692 biolink:NamedThing cerebellar Purkinje cell layer morphogenesis The process in which the anatomical structure of the cerebellar Purkinje cell layer is generated and organized. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031564 biolink:NamedThing transcription antitermination Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond termination site(s). tmpzr1t_l9r_go_relaxed.owl transcriptional readthrough biological_process owl:Class GO:2000621 biolink:NamedThing regulation of DNA replication termination Any process that modulates the frequency, rate or extent of DNA replication termination. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-18T03:26:23Z biological_process owl:Class GO:0003983 biolink:NamedThing UTP:glucose-1-phosphate uridylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + UTP = diphosphate + UDP-D-glucose. tmpzr1t_l9r_go_relaxed.owl UTP:alpha-D-glucose-1-phosphate uridylyltransferase activity|glucose-1-phosphate uridylyltransferase activity|UDPG pyrophosphorylase activity|UDP-glucose pyrophosphorylase activity|UDPG phosphorylase activity|UDP-glucose diphosphorylase activity|UDP glucose pyrophosphorylase activity|uridine diphosphoglucose pyrophosphorylase activity|uridine-diphosphate glucose pyrophosphorylase activity|uridine 5'-diphosphoglucose pyrophosphorylase activity|UTP-glucose-1-phosphate uridylyltransferase activity|uridine diphosphate-D-glucose pyrophosphorylase activity EC:2.7.7.9|Reactome:R-HSA-70286|MetaCyc:GLUC1PURIDYLTRANS-RXN|RHEA:19889|KEGG_REACTION:R00289 molecular_function owl:Class GO:0060940 biolink:NamedThing epithelial to mesenchymal transition involved in cardiac fibroblast development A transition where an epicardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will mature into a cardiac fibroblast. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:32:36Z biological_process owl:Class GO:0032832 biolink:NamedThing regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response Any process that modulates the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells as part of an immune response. tmpzr1t_l9r_go_relaxed.owl regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation during immune response|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation during immune response|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation during immune response|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development involved in immune response|regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002298 biolink:NamedThing CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response The process in which an antigenically naive CD4-positive, alpha-beta T cell acquires the specialized features of a CD4-positive, CD25-positive, alpha-beta regulatory T cell as part of an immune response. tmpzr1t_l9r_go_relaxed.owl CD4-positive, CD25-positive, alpha-beta T cell development involved in immune response|CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation during immune response|CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation during immune response|CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation during immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0004169 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase activity Catalysis of the reaction: dolichyl phosphate D-mannose + protein = dolichyl phosphate + O-D-mannosylprotein. tmpzr1t_l9r_go_relaxed.owl dolichol phosphomannose-protein mannosyltransferase activity|O-glycoside mannosyltransferase|dolichyl-phosphate-D-mannose:protein O-D-mannosyltransferase activity|protein O-D-mannosyltransferase activity|protein O-mannosyltransferase activity|dolichyl-phosphate-mannose-protein O-mannosyltransferase activity Reactome:R-HSA-5615604|MetaCyc:2.4.1.109-RXN|EC:2.4.1.109|Reactome:R-HSA-5615637|Reactome:R-HSA-5615556 Note that this activity has never been observed in green plants. However, N- and C-mannosylation may occur in these species; see figure 1 in PMID:21558543. molecular_function owl:Class GO:0048896 biolink:NamedThing lateral line nerve glial cell migration The movement of a glial cell along the axons in a lateral line nerve. tmpzr1t_l9r_go_relaxed.owl glial cell migration in lateral line nerve biological_process owl:Class GO:0075194 biolink:NamedThing positive regulation of haustorium mother cell formation Any process that activates or increases the frequency, rate or extent of symbiont haustorium mother cell formation. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of haustorium mother cell formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0043029 biolink:NamedThing T cell homeostasis The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl T-cell homeostasis|T-lymphocyte homeostasis|T lymphocyte homeostasis Note that this term represents the return of T cell levels to stable numbers following an immune response as well as the proliferation and elimination of T cells required to maintain stable numbers in the absence of an outside stimulus. biological_process owl:Class GO:0044694 biolink:NamedThing pore-mediated entry of viral genome into host cell Injection by a non-enveloped virus of the viral genome into the host cytoplasm through creation of a pore or channel in the host cell membrane(s). Usually mediated by a viral pore-forming peptide associated with the viral capsid or bacteriophage tail. tmpzr1t_l9r_go_relaxed.owl viral genome delivery via icosahedral vertex|viral genome translocation|membrane puncture-mediated penetration of viral genome into host cell|viral pore-forming protein|viral entry via genome injection|pore-mediated penetration of viral genome into host cell VZ:979 This mechanism is used by animal viruses such as poliovirus. Various tailed bacteriophages also carry specialized proteins which open a pore or a channel in the host membrane(s) to allow genome delivery into host cytoplasm. jl 2012-08-16T11:08:02Z biological_process owl:Class GO:0002114 biolink:NamedThing interleukin-33 receptor activity Combining with interleukin-33 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-33R|IL-33 receptor activity molecular_function owl:Class GO:0038172 biolink:NamedThing interleukin-33-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-33 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-33-mediated signaling pathway|IL33 signaling pathway|interleukin-33-mediated signalling pathway|interleukin-33 signaling pathway bf 2012-06-12T10:57:35Z biological_process owl:Class GO:0021968 biolink:NamedThing corticospinal neuron axon guidance through the internal capsule The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after exiting the cerebral cortex through the internal capsule in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through the internal capsule biological_process owl:Class GO:0140709 biolink:NamedThing Frizzled Nuclear Import pathway The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by internalization and cleavage of the frizzled receptor to yeild a C-terminal fragment that is imported into the nucleus. The frizzled C-terminal fragment is incorporated into large ribonucleoprotein particles and stimulates their egress via nuclear budding. tmpzr1t_l9r_go_relaxed.owl FNI|Frizzled Nuclear Import Wnt Pathway https://github.com/geneontology/go-ontology/issues/21483 pg 2021-09-08T09:11:25Z biological_process owl:Class GO:0033147 biolink:NamedThing negative regulation of intracellular estrogen receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of estrogen receptor signaling pathway|negative regulation of estrogen receptor signalling pathway biological_process owl:Class GO:0072006 biolink:NamedThing nephron development The process whose specific outcome is the progression of the nephron over time, from its formation to the mature structure. A nephron is the functional unit of the kidney. tmpzr1t_l9r_go_relaxed.owl nephrogenesis mah 2010-01-25T01:37:16Z biological_process owl:Class GO:0010260 biolink:NamedThing animal organ senescence The process that occurs in an animal organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. tmpzr1t_l9r_go_relaxed.owl GO:0010261 biological_process owl:Class GO:0009941 biolink:NamedThing chloroplast envelope The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010321 biolink:NamedThing regulation of vegetative phase change Any process that modulates the frequency, rate or extent of vegetative phase change. Vegetative phase change is the set of post-embryonic processes involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015467 biolink:NamedThing G-protein activated inward rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by an inwardly-rectifying voltage-gated channel, where the inward rectification is due to a voltage-dependent block of the channel pore by a G protein. An inwardly rectifying current-voltage relation is one where at any given driving force the inward flow of K+ ions exceeds the outward flow for the opposite driving force. tmpzr1t_l9r_go_relaxed.owl G-protein-activated inward rectifier potassium channel activity|G protein activated inward rectifier potassium channel activity|G protein enhanced inward rectifier potassium channel activity|G-protein enhanced inward rectifier potassium channel activity|G-protein-enhanced inward rectifier potassium channel activity Reactome:R-HSA-1013020 GO:0015273 molecular_function owl:Class GO:0002318 biolink:NamedThing myeloid progenitor cell differentiation The process in which a precursor cell type acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072288 biolink:NamedThing metanephric proximal tubule morphogenesis The process in which the anatomical structures of a metanephric proximal tubule are generated and organized. The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:42:03Z biological_process owl:Class GO:1990031 biolink:NamedThing pinceau fiber Dense plexus formed by the descending collaterals of cerebellar basket cells that wrap around a Purkinje cell axonal initial segment. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao109906988 pr 2013-02-07T12:56:50Z cellular_component owl:Class GO:0015227 biolink:NamedThing acyl carnitine transmembrane transporter activity Enables the transfer of acyl carnitine from one side of a membrane to the other. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl acylcarnitine transporter activity Reactome:R-HSA-200424 molecular_function owl:Class GO:0003404 biolink:NamedThing optic vesicle morphogenesis The developmental process pertaining to the formation and shaping of the optic vesicle. This process begins with the specific processes that contribute to the appearance of the vesicle and ends when the vesicle has evaginated. The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T01:54:34Z biological_process owl:Class GO:0031069 biolink:NamedThing hair follicle morphogenesis The process in which the anatomical structures of the hair follicle are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048730 biolink:NamedThing epidermis morphogenesis The process in which the anatomical structures of the epidermis are generated and organized. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. tmpzr1t_l9r_go_relaxed.owl hypodermis morphogenesis biological_process owl:Class GO:0046878 biolink:NamedThing positive regulation of saliva secretion Any process that activates or increases the frequency, rate or extent of the regulated release of saliva. tmpzr1t_l9r_go_relaxed.owl up-regulation of saliva secretion|upregulation of saliva secretion|up regulation of saliva secretion|activation of saliva secretion|stimulation of saliva secretion biological_process owl:Class GO:0060931 biolink:NamedThing sinoatrial node cell development The process whose specific outcome is the progression of a sinoatrial (SA) node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sinoatrial node. tmpzr1t_l9r_go_relaxed.owl sinus node cell development|SAN cell development|SA node cell development dph 2009-09-29T12:05:47Z biological_process owl:Class GO:0048728 biolink:NamedThing proboscis development The process whose specific outcome is the progression of the proboscis over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl GO:0016349 biological_process owl:Class GO:0015152 biolink:NamedThing glucose-6-phosphate transmembrane transporter activity Enables the transfer of glucose-6-phosphate from one side of a membrane to the other. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048699 biolink:NamedThing generation of neurons The process in which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons. tmpzr1t_l9r_go_relaxed.owl neuron generation biological_process owl:Class GO:0030970 biolink:NamedThing retrograde protein transport, ER to cytosol The directed movement of unfolded or misfolded proteins from the endoplasmic reticulum to the cytosol through the translocon. tmpzr1t_l9r_go_relaxed.owl protein retrotranslocation, ER to cytosol|protein dislocation from ER|retrograde protein transport, endoplasmic reticulum to cytosol biological_process owl:Class GO:0032311 biolink:NamedThing angiogenin-PRI complex A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis. tmpzr1t_l9r_go_relaxed.owl angiogenin-placental ribonuclease inhibitor complex cellular_component owl:Class GO:1902619 biolink:NamedThing regulation of microtubule minus-end binding Any process that modulates the frequency, rate or extent of microtubule minus-end binding. tmpzr1t_l9r_go_relaxed.owl tb 2014-01-14T22:17:16Z biological_process owl:Class GO:0051011 biolink:NamedThing microtubule minus-end binding Binding to the minus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000786 biolink:NamedThing nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. tmpzr1t_l9r_go_relaxed.owl cytoplasmic nucleosome|nuclear nucleosome Wikipedia:Nucleosome GO:0000788|GO:0005718|GO:0000787 cellular_component owl:Class GO:0008073 biolink:NamedThing ornithine decarboxylase inhibitor activity Binds to and stops, prevents or reduces the activity of ornithine decarboxylase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004586 biolink:NamedThing ornithine decarboxylase activity Catalysis of the reaction: L-ornithine + H(+) = CO(2) + putrescine. tmpzr1t_l9r_go_relaxed.owl L-ornithine carboxy-lyase (putrescine-forming)|SpeC|L-ornithine carboxy-lyase activity RHEA:22964|MetaCyc:ORNDECARBOX-RXN|EC:4.1.1.17|KEGG_REACTION:R00670|Reactome:R-HSA-70692 molecular_function owl:Class GO:0009841 biolink:NamedThing mitochondrial endopeptidase Clp complex A Clp endopeptidase complex located in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043366 biolink:NamedThing beta selection The process in which successful recombination of a T cell receptor beta chain into a translatable protein coding sequence leads to rescue from apoptosis and subsequent proliferation of an immature T cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030903 biolink:NamedThing notochord development The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903473 biolink:NamedThing positive regulation of mitotic actomyosin contractile ring contraction Any process that activates or increases the frequency, rate or extent of mitotic actomyosin contractile ring contraction. tmpzr1t_l9r_go_relaxed.owl upregulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|up regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|up regulation of mitotic actomyosin contractile ring contraction|up-regulation of mitotic actomyosin contractile ring contraction|positive regulation of mitotic actomyosin contractile ring constriction|up regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|activation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|up-regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle|activation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|activation of mitotic actomyosin contractile ring contraction|upregulation of mitotic actomyosin contractile ring contraction|positive regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|upregulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|up-regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle|positive regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle https://github.com/geneontology/go-ontology/issues/21855 vw 2014-09-23T14:10:46Z biological_process owl:Class GO:0021541 biolink:NamedThing ammon gyrus development The process whose specific outcome is the progression of the ammon gyrus over time, from its formation to the mature structure. The ammon gyrus, often subdivided into the CA1 and CA3 regions, is one of the two interlocking gyri of the hippocampus that is rich in large pyramidal neurons. tmpzr1t_l9r_go_relaxed.owl Ammon's horn development|cornu ammonis development biological_process owl:Class GO:0060017 biolink:NamedThing parathyroid gland development The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070148 biolink:NamedThing mitochondrial glutaminyl-tRNA aminoacylation The process of coupling glutamine to glutaminyl-tRNA in a mitochondrion, catalyzed by glutaminyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140066 biolink:NamedThing peptidyl-lysine crotonylation The crotonylation of a lysine residue in a protein. Crotonyl is the univalent radical CH3-CH=CH-CO- derived from crotonic acid. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-20T16:48:58Z biological_process owl:Class GO:0000349 biolink:NamedThing generation of catalytic spliceosome for first transesterification step Formation of a catalytic spliceosome complex ready to perform the first splicing reaction. This occurs by an ATP-dependent conformational change of the pre-catalytic spliceosome. tmpzr1t_l9r_go_relaxed.owl formation of catalytic spliceosome for first transesterification step|spliceosomal A2-2 complex biosynthesis|spliceosomal A2-2 complex formation|U2-type catalytic spliceosome formation for first transesterification step|U12-type catalytic spliceosome formation for first transesterification step|spliceosomal C1 complex biosynthesis|spliceosomal C1 complex formation|catalytic spliceosome assembly for first transesterification step Note that this step represents the formation of the A2-2 complex (yeast) or the C1 complex (mammalian). GO:0000356|GO:0000357 biological_process owl:Class GO:0075278 biolink:NamedThing negative regulation of telium development Any process that stops, prevents, or reduces the frequency, rate or extent of telium development, a process that leads to the formation of a teliospore-bearing sorus of the rust fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075275 biolink:NamedThing telium development The process that leads to the development of a telium, which is a teliospore-bearing sorus of the rust fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009533 biolink:NamedThing chloroplast stromal thylakoid Unstacked thylakoids that connect the grana stacks through the stroma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0055107 biolink:NamedThing Golgi to secretory granule transport The directed movement of proteins from the Golgi to a secretory granule. The secretory granule is a membrane-bounded particle, usually protein, formed in the granular endoplasmic reticulum and the Golgi complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042463 biolink:NamedThing ocellus photoreceptor cell development Development of photoreceptors, sensory cells that react to the presence of light, found in the ocellus. tmpzr1t_l9r_go_relaxed.owl non-eye photoreceptor development GO:0001749 biological_process owl:Class GO:0003230 biolink:NamedThing cardiac atrium development The process whose specific outcome is the progression of a cardiac atrium over time, from its formation to the mature structure. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:02:07Z biological_process owl:Class GO:0070170 biolink:NamedThing regulation of tooth mineralization Any process that modulates the frequency, rate or extent of tooth mineralization, the deposition of calcium salts in tooth structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000145 biolink:NamedThing exocyst A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. tmpzr1t_l9r_go_relaxed.owl exocyst complex|Sec6/8 complex Wikipedia:Exocyst cellular_component owl:Class GO:0120184 biolink:NamedThing negative regulation of focal adhesion disassembly Any process that stops, prevents, or reduces the frequency, rate or extent of a focal adhesion into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T18:30:06Z biological_process owl:Class GO:0120181 biolink:NamedThing focal adhesion disassembly The disaggregation of a focal adhesion into its constituent components. A focal adhesion is a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also functions as a locus of signal transduction activity. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T17:37:14Z biological_process owl:Class GO:0004372 biolink:NamedThing glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. tmpzr1t_l9r_go_relaxed.owl serine hydroxymethylase activity|allothreonine aldolase activity|5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase activity|serine hydroxymethyltransferase activity|serine aldolase activity|L-serine hydroxymethyltransferase activity|serine transhydroxymethylase activity Reactome:R-HSA-71249|Reactome:R-HSA-200651|RHEA:15481|MetaCyc:GLYOHMETRANS-RXN|EC:2.1.2.1|Reactome:R-HSA-5694137|Reactome:R-HSA-200735 molecular_function owl:Class GO:0030545 biolink:NamedThing signaling receptor regulator activity Binds to and modulates the activity of a receptor. tmpzr1t_l9r_go_relaxed.owl receptor regulator activity molecular_function owl:Class GO:0048806 biolink:NamedThing genitalia development The process whose specific outcome is the progression of the genitalia over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl genital development biological_process owl:Class GO:0007548 biolink:NamedThing sex differentiation The establishment of the sex of an organism by physical differentiation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sexual_differentiation biological_process owl:Class GO:0010722 biolink:NamedThing regulation of ferrochelatase activity Any process that modulates the frequency, rate or extent of ferrochelatase activity; catalysis of the reaction: protoporphyrin + Fe2+ = protoheme + 2 H+. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007138 biolink:NamedThing meiotic anaphase II The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of meiosis II. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0035589 biolink:NamedThing G protein-coupled purinergic nucleotide receptor signaling pathway The series of molecular signals generated as a consequence of a receptor binding to an extracellular purine nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G-protein coupled purinergic nucleotide receptor signaling pathway|P2Y receptor signaling pathway|G-protein coupled purinergic nucleotide receptor signalling pathway bf 2010-10-22T11:18:59Z biological_process owl:Class GO:0033601 biolink:NamedThing positive regulation of mammary gland epithelial cell proliferation Any process that activates or increases the rate or extent of mammary gland epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of mammary gland epithelial cell proliferation|stimulation of mammary gland epithelial cell proliferation|upregulation of mammary gland epithelial cell proliferation|up-regulation of mammary gland epithelial cell proliferation|activation of mammary gland epithelial cell proliferation biological_process owl:Class GO:0045259 biolink:NamedThing proton-transporting ATP synthase complex A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient. tmpzr1t_l9r_go_relaxed.owl hydrogen-translocating F-type ATPase complex|proton-transporting F-type ATPase complex|F1-F0 complex|hydrogen-transporting ATP synthase complex GO:0045255 cellular_component owl:Class GO:0060592 biolink:NamedThing mammary gland formation The process pertaining to the initial formation of the mammary gland from unspecified parts. The process begins with formation of the mammary line and ends when the solid mammary bud invades the primary mammary mesenchyme. tmpzr1t_l9r_go_relaxed.owl mammary placode formation|mammary line formation|mammary bud formation|mammary sprout formation dph 2009-05-13T08:47:52Z biological_process owl:Class GO:0035196 biolink:NamedThing production of miRNAs involved in gene silencing by miRNA Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts. tmpzr1t_l9r_go_relaxed.owl microRNA-mediated gene silencing, production of microRNAs|miRNA processing|microRNA metabolic process|production of microRNAs involved in gene silencing by microRNA|microRNA biogenesis|microRNA processing|miRNA biogenesis|microRNA metabolism|miRNA biosynthetic process|microRNA biosynthesis|microRNA biosynthetic process|miRNA-mediated gene silencing, production of miRNAs|gene silencing by miRNA, production of miRNAs GO:0030918 biological_process owl:Class GO:0002000 biolink:NamedThing detection of renal blood flow The process in which the juxtaglomerular cells of the kidneys receive information about the amount of blood flowing through the arterioles and converts the information to a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035935 biolink:NamedThing androgen secretion The regulated release of an androgen into the circulatory system. Androgens are steroid hormones that stimulate or control the development and maintenance of masculine characteristics in vertebrates. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-20T01:11:31Z biological_process owl:Class GO:0033567 biolink:NamedThing DNA replication, Okazaki fragment processing The DNA metabolic process, occurring during lagging strand synthesis, by which RNA primers are removed from Okazaki fragments, the resulting gaps filled by DNA polymerization, and the ends ligated to form a continuous strand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990794 biolink:NamedThing basolateral part of cell The region of a cell situated by the cell sides which interface adjacent cells and near the base. Often used in reference to animal polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T20:31:50Z cellular_component owl:Class GO:0001973 biolink:NamedThing G protein-coupled adenosine receptor signaling pathway The series of molecular signals generated as a consequence of a receptor binding to extracellular adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl adenosine receptor signaling pathway|adenosine receptor signaling pathway, G-protein coupled|adenosine receptor signalling pathway|P1 receptor signaling pathway biological_process owl:Class GO:0051229 biolink:NamedThing meiotic spindle disassembly The controlled breakdown of the spindle during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic spindle breakdown|spindle breakdown during meiosis|meiotic spindle catabolism|spindle degradation during meiosis|spindle disassembly during meiosis|meiotic spindle degradation biological_process owl:Class GO:0098843 biolink:NamedThing postsynaptic endocytic zone A stably positioned site of clathrin adjacent and physically attached to the postsynaptic specialization, which is the site of endocytosis of post-synaptic proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014044 biolink:NamedThing Schwann cell development The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048908 biolink:NamedThing anterior lateral line ganglion neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron of the anterior lateral line ganglion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048907 biolink:NamedThing anterior lateral line ganglion development The process whose specific outcome is the progression of the anterior lateral line ganglion over time, from its formation to the mature structure. The anterior lateral line ganglion develops from cranial ectodermal placodes situated between the eye and ear. tmpzr1t_l9r_go_relaxed.owl gALL development biological_process owl:Class GO:0048347 biolink:NamedThing negative regulation of paraxial mesodermal cell fate determination Any process that stops, prevents, or reduces the frequency, rate or extent of paraxial mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl down regulation of paraxial mesodermal cell fate determination|inhibition of paraxial mesodermal cell fate determination|downregulation of paraxial mesodermal cell fate determination|down-regulation of paraxial mesodermal cell fate determination biological_process owl:Class GO:0000319 biolink:NamedThing sulfite transmembrane transporter activity Enables the transfer of sulfite ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl sulphite transporter activity molecular_function owl:Class GO:0071944 biolink:NamedThing cell periphery The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-04T01:51:47Z cellular_component owl:Class GO:0072138 biolink:NamedThing mesenchymal cell proliferation involved in ureteric bud development The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population of the ureteric bud, that contributes to ureteric bud development. tmpzr1t_l9r_go_relaxed.owl ureteric bud mesenchymal cell proliferation mah 2010-02-22T02:40:38Z biological_process owl:Class GO:0001657 biolink:NamedThing ureteric bud development The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903346 biolink:NamedThing positive regulation of protein polyglycylation Any process that activates or increases the frequency, rate or extent of protein polyglycylation. tmpzr1t_l9r_go_relaxed.owl up regulation of protein polyglycylation|up-regulation of protein polyglycylation|upregulation of protein polyglycylation|activation of protein polyglycylation sart 2014-08-19T09:32:24Z biological_process owl:Class GO:0140114 biolink:NamedThing cellular detoxification of fluoride Any process carried out at the cellular level that reduces or removes the toxicity of a fluoride. These may include transport of fluoride away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14391 pg 2017-10-23T15:39:43Z biological_process owl:Class GO:0004517 biolink:NamedThing nitric-oxide synthase activity Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+. tmpzr1t_l9r_go_relaxed.owl nitric oxide synthase activity|nitric-oxide synthetase activity|L-arginine,NADPH:oxygen oxidoreductase (nitric-oxide-forming) activity|nitric oxide synthetase activity|endothelium-derived relaxation factor-forming enzyme activity|endothelium-derived relaxing factor synthase activity|NO synthase activity|NADPH-diaphorase activity Reactome:R-HSA-202127|MetaCyc:NITRIC-OXIDE-SYNTHASE-RXN|RHEA:19897|EC:1.14.13.39|Reactome:R-HSA-418436 molecular_function owl:Class GO:0015566 biolink:NamedThing acriflavine transmembrane transporter activity Enables the directed movement of acriflavin from one side of a membrane to the other. Acriflavin is a fluorescent dye used as a local antiseptic and also as a biological stain. It intercalates into nucleic acids thereby inhibiting bacterial and viral replication. tmpzr1t_l9r_go_relaxed.owl acriflavine transporter activity|acriflavin resistant pump activity|acriflavin transporter activity GO:0015555 molecular_function owl:Class GO:0015894 biolink:NamedThing acriflavine transport The directed movement of acriflavine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acriflavine is a fluorescent dye used as a local antiseptic and also as a biological stain. It intercalates into nucleic acids thereby inhibiting bacterial and viral replication. tmpzr1t_l9r_go_relaxed.owl acriflavin transport biological_process owl:Class GO:0140651 biolink:NamedThing futile creatine cycle The phosphorylation and dephosphorylation of creatine in a futile cycle, which dissipates the high energy charge of phosphocreatine as heat without performing any mechanical or chemical work. The futile creatine cycle takes place in thermogenic fat cells and is part of adaptive thermogenesis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21517 pg 2021-05-26T06:40:18Z biological_process owl:Class GO:0050187 biolink:NamedThing phosphoamidase activity Catalysis of the reaction: N-phosphocreatine + H(2)O = creatine + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphamide hydrolase activity|creatine phosphatase activity MetaCyc:PHOSPHOAMIDASE-RXN|EC:3.9.1.1|RHEA:12977|KEGG_REACTION:R01882 molecular_function owl:Class GO:0006957 biolink:NamedThing complement activation, alternative pathway Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes. tmpzr1t_l9r_go_relaxed.owl complement cascade, alternative pathway biological_process owl:Class GO:0060386 biolink:NamedThing synapse assembly involved in innervation The assembly of a synapse within a target tissue in which a nerve is invading. tmpzr1t_l9r_go_relaxed.owl synaptogenesis involved in innervation|synapse biogenesis involved in innervation biological_process owl:Class GO:0043061 biolink:NamedThing meiotic metaphase II plate congression The alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the meiotic spindle, during meiosis II. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060225 biolink:NamedThing positive regulation of retinal rod cell fate commitment Any process that increases the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901582 biolink:NamedThing positive regulation of telomeric RNA transcription from RNA pol II promoter Any process that activates or increases the frequency, rate or extent of telomeric RNA transcription from RNA pol II promoter. tmpzr1t_l9r_go_relaxed.owl up regulation of telomeric RNA transcription from Pol II promoter|activation of telomeric RNA transcription from RNA pol II promoter|up regulation of telomeric RNA transcription from RNA pol II promoter|activation of telomeric RNA transcription from Pol II promoter|upregulation of telomeric RNA transcription from RNA pol II promoter|positive regulation of telomeric RNA transcription from Pol II promoter|up-regulation of telomeric RNA transcription from Pol II promoter|up-regulation of telomeric RNA transcription from RNA pol II promoter|upregulation of telomeric RNA transcription from Pol II promoter al 2012-11-06T11:07:25Z biological_process owl:Class GO:0061608 biolink:NamedThing nuclear import signal receptor activity Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. tmpzr1t_l9r_go_relaxed.owl importin activity https://github.com/geneontology/go-ontology/issues/14336 dph 2014-03-03T07:58:18Z molecular_function owl:Class GO:0072023 biolink:NamedThing thick ascending limb development The process whose specific outcome is the progression of the thick ascending limb over time, from its formation to the mature structure. The thick ascending limb is the last part of the loop of Henle. Its thick, mitochondria-rich epithelium characterizes the outer medulla, and is responsible for very avid active salt transport. At the macula densa, the thick ascending limb connects to the distal convoluted tubule. tmpzr1t_l9r_go_relaxed.owl TAL development mah 2010-01-25T02:39:51Z GO:0072026 biological_process owl:Class GO:0099580 biolink:NamedThing ion antiporter activity involved in regulation of postsynaptic membrane potential Any ion antiporter activity, occurring in the postsynaptic membrane, that is involved in regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ion antiporter activity involved in regulation of post-synaptic membrane potential molecular_function owl:Class GO:1901541 biolink:NamedThing ent-pimara-8(14),15-diene biosynthetic process The chemical reactions and pathways resulting in the formation of ent-pimara-8(14),15-diene. tmpzr1t_l9r_go_relaxed.owl ent-pimara-8(14),15-diene synthesis|ent-pimara-8(14),15-diene formation|ent-pimara-8(14),15-diene anabolism|ent-pimara-8(14),15-diene biosynthesis di 2012-10-25T15:38:21Z biological_process owl:Class GO:0103116 biolink:NamedThing ABC-type D-galactofuranose transporter Catalysis of the reaction: alpha-D-galactofuranose + ATP + H2O <=> alpha-D-galactofuranose + hydrogenphosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl ATP-dependent alpha-D-galactofuranose transporter activity|alpha-D-galactofuranose transporter activity|ATPase-coupled alpha-D-galactofuranose transporter activity RHEA:61716|EC:7.5.2.9|MetaCyc:TRANS-RXN0-491 molecular_function owl:Class GO:0060591 biolink:NamedThing chondroblast differentiation The process in which a mesenchymal cell, acquires specialized structural and/or functional features of a chondroblast. Differentiation includes the processes involved in commitment of a cell to a chondroblast fate. A chondroblast is a precursor cell to chondrocytes. tmpzr1t_l9r_go_relaxed.owl chondrocyte progenitor cell differentiation dph 2009-05-11T07:47:36Z biological_process owl:Class GO:0090112 biolink:NamedThing COPII vesicle uncoating The process in which COPII vesicle coat proteins are disassembled, and released. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-06T08:56:50Z biological_process owl:Class GO:1902680 biolink:NamedThing positive regulation of RNA biosynthetic process Any process that activates or increases the frequency, rate or extent of RNA biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of RNA biosynthetic process|upregulation of RNA biosynthesis|up-regulation of RNA biosynthetic process|activation of RNA anabolism|up regulation of RNA anabolism|upregulation of RNA anabolism|positive regulation of RNA anabolism|activation of RNA biosynthetic process|activation of RNA synthesis|up regulation of RNA biosynthesis|upregulation of RNA synthesis|up regulation of RNA formation|activation of RNA formation|up-regulation of RNA synthesis|up regulation of RNA biosynthetic process|up-regulation of RNA formation|up-regulation of RNA biosynthesis|up regulation of RNA synthesis|positive regulation of RNA biosynthesis|positive regulation of RNA synthesis|activation of RNA biosynthesis|up-regulation of RNA anabolism|upregulation of RNA formation|positive regulation of RNA formation jl 2014-02-05T16:32:10Z biological_process owl:Class GO:0072656 biolink:NamedThing maintenance of protein location in mitochondrion Any process in which a protein is maintained in a specific location in a mitochondrion, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:30:43Z biological_process owl:Class GO:0120308 biolink:NamedThing axonemal outer doublet assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal outer doublet, a part of an axoneme consisting of a doublet microtubule. tmpzr1t_l9r_go_relaxed.owl axoneme outer doublet assembly|axonemal outer doublet morphogenesis|outer-doublet microtubule assembly|axonemal outer doublet biogenesis|outer doublet assembly|axonemal outer doublet formation https://github.com/geneontology/go-ontology/issues/21154 krc 2021-03-23T16:28:18Z biological_process owl:Class GO:0060515 biolink:NamedThing prostate field specification The process that results in the delineation of a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071659 biolink:NamedThing negative regulation of IP-10 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of IP-10. tmpzr1t_l9r_go_relaxed.owl negative regulation of chemokine (C-C motif) ligand 10 production|negative regulation of CXCL10 production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0035773 biolink:NamedThing insulin secretion involved in cellular response to glucose stimulus The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin, in response to a glucose stimulus. tmpzr1t_l9r_go_relaxed.owl insulin secretion involved in cellular response to glucose bf 2011-04-01T01:14:40Z biological_process owl:Class GO:2000728 biolink:NamedThing regulation of mRNA export from nucleus in response to heat stress Any process that modulates the frequency, rate or extent of mRNA export from nucleus in response to heat stress. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA export from nucleus during heat stress|regulation of mRNA export from cell nucleus during heat stress pr 2011-06-08T12:17:45Z biological_process owl:Class GO:0031990 biolink:NamedThing mRNA export from nucleus in response to heat stress The directed movement of mRNA from the nucleus to the cytoplasm during a heat stimulus, a temperature stimulus above the optimal temperature for the organism; in particular, a process that enables an organism withstand exposure to temperatures that would otherwise lethally impair poly(A)+ mRNA-nucleus export. tmpzr1t_l9r_go_relaxed.owl mRNA export from nucleus during heat stress|mRNA export from cell nucleus during heat stress biological_process owl:Class GO:0016318 biolink:NamedThing ommatidial rotation The process in which photoreceptors are arranged in ommatidia in the dorsal and ventral fields to be mirror images. The polarity is established in the imaginal discs concurrently with cell fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042067 biolink:NamedThing establishment of ommatidial planar polarity The specification of polarized ommatidia. Ommatidia occur in two chiral forms. The trapezoidal arrangement of photoreceptors in the dorsal part of the eye is the mirror image of that in the ventral part. tmpzr1t_l9r_go_relaxed.owl establishment of ommatidial polarity biological_process owl:Class GO:0071701 biolink:NamedThing regulation of MAPK export from nucleus Any process that modulates the frequency, rate or extent of the directed movement of a MAP kinase from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl regulation of cytoplasmic translocation of MAP kinase|regulation of MAPK export from cell nucleus|regulation of MAPK-nucleus export|regulation of cytoplasmic translocation of mitogen-activated protein kinase|regulation of MAPK export out of nucleus|regulation of MAPK transport from nucleus to cytoplasm mah 2010-03-02T01:24:12Z biological_process owl:Class GO:0045204 biolink:NamedThing MAPK export from nucleus The directed movement of a MAP kinase from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cytoplasmic translocation of MAP kinase|MAPK-nucleus export|cytoplasmic translocation of mitogen-activated protein kinase|MAPK transport from nucleus to cytoplasm|MAPK export out of nucleus|MAPK export from cell nucleus biological_process owl:Class GO:1901482 biolink:NamedThing L-lysine import into vacuole involved in cellular response to nitrogen starvation A L-lysine import into the vacuole that is involved in cellular response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl al 2012-10-08T08:34:03Z biological_process owl:Class GO:0030671 biolink:NamedThing clathrin-coated phagocytic vesicle membrane The lipid bilayer surrounding a clathrin-coated phagocytic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902947 biolink:NamedThing regulation of tau-protein kinase activity Any process that modulates the frequency, rate or extent of tau-protein kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP:tau-protein O-phosphotransferase activity|regulation of STK31|regulation of tau-protein kinase II activity|regulation of tau kinase activity|regulation of TPK I|regulation of protein tau kinase activity|regulation of tau-tubulin kinase activity|regulation of [Tau protein] kinase activity|regulation of TTK|regulation of tau protein kinase activity|regulation of TPK|regulation of cdk5/p20|regulation of glycogen synthase kinase-3beta activity|regulation of TPK II|regulation of tau-protein kinase I activity|regulation of brain protein kinase PK40erk activity|regulation of GSK|regulation of CDK5/p23 sjp 2014-05-02T08:43:27Z biological_process owl:Class GO:0034496 biolink:NamedThing multivesicular body membrane disassembly The controlled breakdown of the membranes of multivesicular bodies. tmpzr1t_l9r_go_relaxed.owl MVB membrane disassembly biological_process owl:Class GO:0039022 biolink:NamedThing pronephric duct development The process whose specific outcome is the progression of the pronephric duct over time, from its formation to the mature structure. The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T10:15:03Z biological_process owl:Class GO:1902595 biolink:NamedThing regulation of DNA replication origin binding Any process that modulates the frequency, rate or extent of DNA replication origin binding. tmpzr1t_l9r_go_relaxed.owl regulation of ARS binding mah 2013-12-19T16:19:39Z biological_process owl:Class GO:0003688 biolink:NamedThing DNA replication origin binding Binding to a DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally. tmpzr1t_l9r_go_relaxed.owl ARS binding molecular_function owl:Class GO:0014010 biolink:NamedThing Schwann cell proliferation The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009782 biolink:NamedThing photosystem I antenna complex The antenna complex of photosystem I. A photosystem has two closely linked components, an antenna containing light-absorbing pigments and a reaction center. Each antenna contains one or more light-harvesting complexes (LHCs). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061309 biolink:NamedThing cardiac neural crest cell development involved in outflow tract morphogenesis The process aimed at the progression of a cardiac neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell that contributes to the shaping of the outflow tract. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-23T09:08:37Z biological_process owl:Class GO:0060037 biolink:NamedThing pharyngeal system development The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022005 biolink:NamedThing midbrain-hindbrain boundary maturation during neural plate development A developmental process occurring before the brain has been specified along the neural axis that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl midbrain-hindbrain boundary maturation involved in neural plate development biological_process owl:Class GO:0022011 biolink:NamedThing myelination in peripheral nervous system The process in which neuronal axons and dendrites become coated with a segmented lipid-rich sheath (myelin) to enable faster and more energetically efficient conduction of electrical impulses. The sheath is formed by the cell membranes of Schwann cells in the peripheral nervous system. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier. tmpzr1t_l9r_go_relaxed.owl peripheral nervous system myelination biological_process owl:Class GO:0120041 biolink:NamedThing positive regulation of macrophage proliferation Any process that activates or increases the frequency, rate or extent of macrophage proliferation. tmpzr1t_l9r_go_relaxed.owl krc 2017-05-10T20:45:01Z biological_process owl:Class GO:0106098 biolink:NamedThing NAGS/NAGK complex A protein complex that acts both as N-acetylglutamate synthase (NAGS) catalysing the production of N-Acetylglutamate from glutamate and acetyl-CoA, and as N-acetylglutamate kinase (NAGK) catalysing the reaction ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamyl 5-phosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2018-02-15T00:22:31Z cellular_component owl:Class GO:0080091 biolink:NamedThing regulation of raffinose metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving raffinose. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-22T04:36:27Z biological_process owl:Class GO:0033530 biolink:NamedThing raffinose metabolic process The chemical reactions and pathways involving raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl raffinose metabolism biological_process owl:Class GO:0038181 biolink:NamedThing bile acid receptor activity Combining with a bile acid and transmitting the signal to initiate a change in cell activity. A bile acid is any member of a group of steroid carboxylic acids occurring in bile. tmpzr1t_l9r_go_relaxed.owl bf 2013-05-16T10:27:02Z molecular_function owl:Class GO:0080001 biolink:NamedThing mucilage extrusion from seed coat The process in which seed mucilage expands through hydration and breaks the outer cell wall that encapsulates the whole seed upon imbibition. Mucilage, mainly composed of pectins, is formed during seed development and deposited into the apoplast underneath the outer wall of the seed coat. tmpzr1t_l9r_go_relaxed.owl secretion of mucilage from seed coat|mucilage release from seed coat biological_process owl:Class GO:0043587 biolink:NamedThing tongue morphogenesis The process in which the anatomical structures of the tongue are generated and organized. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech. tmpzr1t_l9r_go_relaxed.owl glossa morphogenesis|lingua morphogenesis biological_process owl:Class GO:0050051 biolink:NamedThing leukotriene-B4 20-monooxygenase activity Catalysis of the reaction: leukotriene B4 + O2 + reduced [NADPH-hemoprotein reductase] = 20-hydroxy-leukotriene B4 + H+ + H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl LTB4 20-hydroxylase activity|LTB4 omega-hydroxylase activity|leukotriene-B4 omega-hydroxylase activity|leukotriene-B4 20-hydroxylase activity|LTB(4) 20-hydroxylase activity|LTB(4) omega-hydroxylase activity EC:1.14.14.94|RHEA:22176|MetaCyc:LEUKOTRIENE-B4-20-MONOOXYGENASE-RXN|Reactome:R-HSA-211873 molecular_function owl:Class GO:0048315 biolink:NamedThing conidium formation The process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus. tmpzr1t_l9r_go_relaxed.owl conidia formation|conidia biosynthesis biological_process owl:Class GO:0140610 biolink:NamedThing RNA sequestering activity The selective interaction of a protein with a specific RNA molecule to prevent it from interacting with other partners or inhibiting its localization to other areas of the cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20945 pg 2021-02-24T13:53:46Z molecular_function owl:Class GO:1990583 biolink:NamedThing phospholipase D activator activity Increases the activity of the enzyme phospholipase D. tmpzr1t_l9r_go_relaxed.owl sl 2014-12-10T21:04:46Z molecular_function owl:Class GO:0071807 biolink:NamedThing replication fork arrest involved in DNA replication termination A replication fork arrest process that contributes to the termination of DNA replication. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T03:26:38Z biological_process owl:Class GO:0048376 biolink:NamedThing positive regulation of lateral mesodermal cell fate determination Any process that activates or increases the frequency, rate or extent of lateral mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl stimulation of lateral mesodermal cell fate determination|upregulation of lateral mesodermal cell fate determination|up regulation of lateral mesodermal cell fate determination|up-regulation of lateral mesodermal cell fate determination|activation of lateral mesodermal cell fate determination|positive regulation of lateral plate mesodermal cell fate determination biological_process owl:Class GO:0048373 biolink:NamedThing lateral mesodermal cell fate determination The process in which a cell becomes capable of differentiating autonomously into a lateral mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl lateral plate mesodermal cell fate determination|lateral mesoderm cell fate determination|lateral plate mesoderm cell fate determination biological_process owl:Class GO:1990836 biolink:NamedThing lysosomal matrix A matrix composed of supramolecular assemblies of lysosomal enzymes and lipids which forms at a pH of 5.0 within the lysosome. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-25T17:04:12Z cellular_component owl:Class GO:1900635 biolink:NamedThing heptadecane metabolic process The chemical reactions and pathways involving heptadecane. tmpzr1t_l9r_go_relaxed.owl heptadecane metabolism tt 2012-05-21T07:05:01Z biological_process owl:Class GO:0031450 biolink:NamedThing negative regulation of slow-twitch skeletal muscle fiber contraction Any process that stops, prevents, or reduces the frequency, rate or extent of slow-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl negative regulation of slow-twitch skeletal muscle contraction|inhibition of slow-twitch skeletal muscle contraction|down regulation of slow-twitch skeletal muscle contraction|downregulation of slow-twitch skeletal muscle contraction|down-regulation of slow-twitch skeletal muscle contraction biological_process owl:Class GO:0031444 biolink:NamedThing slow-twitch skeletal muscle fiber contraction A process in which force is generated within slow-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The slow-twitch skeletal muscle is characterized by slow time parameters, low force development and resistance to fatigue. tmpzr1t_l9r_go_relaxed.owl slow-twitch skeletal muscle fibre contraction biological_process owl:Class GO:0075242 biolink:NamedThing negative regulation of zoospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of zoospore formation, a process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008258 biolink:NamedThing head involution Movement of the anterior ectoderm to the interior of the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902463 biolink:NamedThing protein localization to cell leading edge A process in which a protein is transported to, or maintained in, a location within a cell leading edge. tmpzr1t_l9r_go_relaxed.owl protein localisation to cell leading edge|protein localisation in cell leading edge|protein localization in cell leading edge jl 2013-10-22T12:36:07Z biological_process owl:Class GO:0002280 biolink:NamedThing monocyte activation involved in immune response The change in morphology and behavior of a monocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl monocyte activation during immune response biological_process owl:Class GO:0031656 biolink:NamedThing positive regulation of heat dissipation Any process that activates or increases the rate or extent of heat dissipation. tmpzr1t_l9r_go_relaxed.owl up-regulation of heat dissipation|upregulation of heat dissipation|up regulation of heat dissipation|activation of heat dissipation|stimulation of heat dissipation biological_process owl:Class GO:0006258 biolink:NamedThing UDP-glucose catabolic process The chemical reactions and pathways resulting in the breakdown of UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucose breakdown|UDP-glucose conversion|UDP-glucose degradation|UDP-glucose catabolism GO:0019691 biological_process owl:Class GO:0090333 biolink:NamedThing regulation of stomatal closure Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-26T02:14:49Z biological_process owl:Class GO:0090332 biolink:NamedThing stomatal closure The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-26T02:14:49Z biological_process owl:Class GO:0045186 biolink:NamedThing zonula adherens assembly Assembly of the zonula adherens, a cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017133 biolink:NamedThing mitochondrial electron transfer flavoprotein complex A protein complex located in the mitochondrion. It contains flavin adenine dinucleotide (FAD) that, together with an acyl-CoA dehydrogenase, forms a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors in the mitochondrial electron transport system. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061598 biolink:NamedThing molybdopterin adenylyltransferase activity Catalysis of the reaction ATP + molybdopterin = diphosphate + adenylyl-molybdopterin. tmpzr1t_l9r_go_relaxed.owl RHEA:31331|EC:2.7.7.75 dph 2014-02-10T14:14:06Z molecular_function owl:Class GO:2000339 biolink:NamedThing negative regulation of chemokine (C-X-C motif) ligand 1 production Any process that stops, prevents or reduces the frequency, rate or extent of chemokine (C-X-C motif) ligand 1 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of SCYB1 production|negative regulation of CXCL1 production|negative regulation of KC production|negative regulation of keratinocyte derived chemokine production mah 2011-02-01T10:46:31Z biological_process owl:Class GO:0072566 biolink:NamedThing chemokine (C-X-C motif) ligand 1 production The appearance of chemokine (C-X-C motif) ligand 1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl SCYB1 production|CXCL1 production|KC production|keratinocyte derived chemokine production mah 2011-01-31T11:31:58Z biological_process owl:Class GO:0006123 biolink:NamedThing mitochondrial electron transport, cytochrome c to oxygen The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV. tmpzr1t_l9r_go_relaxed.owl complex IV (reduction of O2) biological_process owl:Class GO:0042584 biolink:NamedThing chromaffin granule membrane The lipid bilayer surrounding a chromaffin granule, a specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904286 biolink:NamedThing negative regulation of protein-pyridoxal-5-phosphate linkage Any process that stops, prevents or reduces the frequency, rate or extent of protein-pyridoxal-5-phosphate linkage. tmpzr1t_l9r_go_relaxed.owl downregulation of protein-pyridoxal-5-phosphate linkage|down-regulation of protein-pyridoxal-5-phosphate linkage|inhibition of protein-pyridoxal-5-phosphate linkage|down regulation of protein-pyridoxal-5-phosphate linkage mcc 2015-06-05T17:21:21Z biological_process owl:Class GO:0034044 biolink:NamedThing exomer complex A protein complex that forms a coat structure on vesicles involved in exocytosis of proteins from the trans-Golgi network to the cell surface; in Saccharomyces, the complex contains Chs5p, Chs6p, and Chs6p paralogues. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010256 biolink:NamedThing endomembrane system organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endomembrane system. tmpzr1t_l9r_go_relaxed.owl endomembrane organization|endomembrane system organisation biological_process owl:Class GO:0042012 biolink:NamedThing interleukin-16 receptor activity Combining with interleukin-16 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-16 receptor activity|IL-16R molecular_function owl:Class GO:0042011 biolink:NamedThing interleukin-16 binding Binding to interleukin-16. tmpzr1t_l9r_go_relaxed.owl IL-16 binding molecular_function owl:Class GO:0016182 biolink:NamedThing synaptic vesicle budding from endosome Budding of synaptic vesicles during the formation of constitutive recycling vesicles from early endosomes. tmpzr1t_l9r_go_relaxed.owl endosome to synaptic vesicle budding|synaptic vesicle budding involved in synaptic vesicle exocytosis biological_process owl:Class GO:0046812 biolink:NamedThing host cell surface binding Binding to the surface of a host cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060775 biolink:NamedThing planar cell polarity pathway involved in gastrula mediolateral intercalation The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) contributing to the interdigitation of cells along the mediolateral axis during gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T06:52:50Z biological_process owl:Class GO:0060031 biolink:NamedThing mediolateral intercalation The interdigitation of cells along the mediolateral axis during gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075195 biolink:NamedThing negative regulation of haustorium mother cell formation Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont haustorium mother cell formation. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of haustorium mother cell formation on or near host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0002505 biolink:NamedThing antigen processing and presentation of polysaccharide antigen via MHC class II The process in which an antigen-presenting cell expresses a polysaccharide antigen on its cell surface in association with an MHC class II protein complex. tmpzr1t_l9r_go_relaxed.owl polysaccharide antigen processing and presentation via MHC class II biological_process owl:Class GO:0046861 biolink:NamedThing glyoxysomal membrane The lipid bilayer surrounding a glyoxysome. tmpzr1t_l9r_go_relaxed.owl glyoxysome membrane cellular_component owl:Class GO:0009514 biolink:NamedThing glyoxysome A specialized form of peroxisome that contains the enzymes of the glyoxylate pathway. The glyoxysome is found in some plant cells, notably the cells of germinating seeds. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Glyoxysome cellular_component owl:Class GO:0048242 biolink:NamedThing epinephrine secretion The regulated release of epinephrine by a cell. Epinephrine is a catecholamine hormone secreted by the adrenal medulla and a neurotransmitter, released by certain neurons and active in the central nervous system. tmpzr1t_l9r_go_relaxed.owl adrenaline secretion biological_process owl:Class GO:0033759 biolink:NamedThing flavone synthase activity Catalysis of the reaction: a flavanone + 2-oxoglutarate + O2 = a flavone + succinate + CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl flavone synthase I activity|flavanone,2-oxoglutarate:oxygen oxidoreductase (dehydrating) activity|FNS I RHEA:10448|MetaCyc:RXN-8000|EC:1.14.20.5 molecular_function owl:Class GO:0090674 biolink:NamedThing endothelial cell-matrix adhesion via fibronectin The binding of an endothelial cell to the extracellular matrix via fibronectin. tmpzr1t_l9r_go_relaxed.owl tb 2016-01-15T15:40:58Z biological_process owl:Class GO:0005726 biolink:NamedThing perichromatin fibrils Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070544 biolink:NamedThing histone H3-K36 demethylation The modification of histone H3 by the removal of a methyl group from lysine at position 36 of the histone. tmpzr1t_l9r_go_relaxed.owl H3K36 demethylation biological_process owl:Class GO:0032621 biolink:NamedThing interleukin-18 production The appearance of interleukin-18 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL1F4 production|interleukin-18 secretion|IL-18 production|interleukin-18 biosynthetic process|IGIF production GO:0072616|GO:0042241 biological_process owl:Class GO:0021996 biolink:NamedThing lamina terminalis formation The process in which the anterior-most portion of the neural axis is formed by closure of the anterior neuropore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021506 biolink:NamedThing anterior neuropore closure The joining together of the neural folds of the rostral opening of the neural tube. The anterior neuropore appears before the process of neural tube closure is complete. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080020 biolink:NamedThing regulation of coenzyme A biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving coenzyme A. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007277 biolink:NamedThing pole cell development The process whose specific outcome is the progression of the pole cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001740 biolink:NamedThing Barr body A structure found in a female mammalian cell containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Barr_body|NIF_Subcellular:sao1571698684 cellular_component owl:Class GO:0030994 biolink:NamedThing primary cell septum disassembly Dissolution of the primary septum during cell separation. tmpzr1t_l9r_go_relaxed.owl hydrolysis of primary cell septum|primary septum hydrolysis|primary cell septum hydrolysis biological_process owl:Class GO:0000920 biolink:NamedThing septum digestion after cytokinesis The process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis. tmpzr1t_l9r_go_relaxed.owl mitotic cytokinetic cell separation|cell separation after cytokinesis|cytokinetic cell separation|daughter cell separation|cell separation following cytokinesis This term should not be used to describe the last step of cytokinesis in organisms without a cell wall, ie, the cell resealing of the plasma membrane via abscission. Consider annotating to 'GO:0061952 midbody abscission' to capture this process. GO:1902409|GO:2000695 biological_process owl:Class GO:0005692 biolink:NamedThing U11 snRNP A ribonucleoprotein complex that contains small nuclear RNA U11, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U11 snRNP, most of which remain associated with the U11 snRNA both while the U11 snRNP is free or assembled into a series of spliceosomal complexes. tmpzr1t_l9r_go_relaxed.owl 12S U11 snRNP|snRNP U11 cellular_component owl:Class GO:0060132 biolink:NamedThing prolactin secreting cell development The process whose specific outcome is the progression of a prolactin secreting cell over time, from its formation to the mature structure. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin. tmpzr1t_l9r_go_relaxed.owl mammotroph development|lactotropic cell development|lactotroph development|lactotrope development|mammotrophic cell development|mammotrope development|mammotropic cell development|epsilon-acidophil development biological_process owl:Class GO:0048398 biolink:NamedThing intermediate mesodermal cell fate specification The process in which a cell becomes capable of differentiating autonomously into an intermediate mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl intermediate mesoderm cell fate specification biological_process owl:Class GO:0072675 biolink:NamedThing osteoclast fusion The plasma membrane fusion process that results in fusion of mononuclear osteoclasts to form a multinuclear osteoclast. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T02:14:34Z biological_process owl:Class GO:0072674 biolink:NamedThing multinuclear osteoclast differentiation The process in which a relatively unspecialized monocyte acquires the specialized features of a multinuclear osteoclast. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue. tmpzr1t_l9r_go_relaxed.owl multinuclear osteoclast morphogenesis|multinuclear osteoclast formation mah 2011-02-22T02:10:38Z biological_process owl:Class GO:2000714 biolink:NamedThing positive regulation of maintenance of meiotic sister chromatid cohesion, arms Any process that activates or increases the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl positive regulation of maintenance of meiotic sister chromatin cohesion along arms|positive regulation of maintenance of sister chromatin cohesion along arms at meiosis I mah 2011-06-01T12:45:42Z biological_process owl:Class GO:0048185 biolink:NamedThing activin binding Binding to activin, a dimer of inhibin-beta subunits. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008017 biolink:NamedThing microtubule binding Binding to a microtubule, a filament composed of tubulin monomers. tmpzr1t_l9r_go_relaxed.owl microtubule/chromatin interaction|microtubule severing activity Reactome:R-HSA-9614343 molecular_function owl:Class GO:0061407 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrogen peroxide (H2O2) stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T11:39:10Z biological_process owl:Class GO:0070301 biolink:NamedThing cellular response to hydrogen peroxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030724 biolink:NamedThing testicular fusome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fusome of testicular cells, an organelle derived from the spectrosome. tmpzr1t_l9r_go_relaxed.owl testicular fusome organisation|testicular fusome organization and biogenesis biological_process owl:Class GO:0098866 biolink:NamedThing multivesicular body fusion to apical plasma membrane The fusion of the membrane of a multivesicular body with the apical plasma membrane, resulting in release of exosomes from the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990182 biolink:NamedThing exosomal secretion The process whereby a membrane-bounded vesicle is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. tmpzr1t_l9r_go_relaxed.owl exosomal protein secretion|extracellular vesicular exosome secretion|multi-vesicular body fusion with plasma membrane|secretion of exosome|exosomal secretory pathway hjd 2013-09-04T21:08:14Z biological_process owl:Class GO:0042906 biolink:NamedThing xanthine transport The directed movement of xanthine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Xanthine (2,6-dihydroxypurine) is a purine formed in the metabolic breakdown of guanine, but is not present in nucleic acids. tmpzr1t_l9r_go_relaxed.owl xanthine transmembrane transport biological_process owl:Class GO:0031954 biolink:NamedThing positive regulation of protein autophosphorylation Any process that activates or increases the frequency, rate or extent of the phosphorylation by a protein of one or more of its own residues. tmpzr1t_l9r_go_relaxed.owl up-regulation of protein amino acid autophosphorylation|up regulation of protein amino acid autophosphorylation|positive regulation of protein amino acid autophosphorylation|activation of protein amino acid autophosphorylation|stimulation of protein amino acid autophosphorylation|upregulation of protein amino acid autophosphorylation biological_process owl:Class GO:0110104 biolink:NamedThing mRNA alternative polyadenylation The process of generating multiple mRNA molecules with variable 3'-end length formation from a given pre-mRNA by differential use of cleavage and polyadenylation signals (pA signals). tmpzr1t_l9r_go_relaxed.owl kmv 2018-03-27T19:26:56Z biological_process owl:Class GO:0060010 biolink:NamedThing Sertoli cell fate commitment The process in which the cellular identity of Sertoli cells is acquired and determined. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019087 biolink:NamedThing transformation of host cell by virus A virus-induced cellular transformation resulting in immortalized cells, or cells capable of indefinite replication. tmpzr1t_l9r_go_relaxed.owl viral transformation|transformation of host cell|viral immortalization|host cell transformation|viral transformation of host cell|immortalization of host cell by virus|host cell immortalization|immortalization of host cell Wikipedia:Viral_transformation GO:0020021|GO:0019088 biological_process owl:Class GO:0035072 biolink:NamedThing ecdysone-mediated induction of salivary gland cell autophagic cell death Any process induced by ecdysone that directly activates salivary gland programmed cell death during salivary gland histolysis. tmpzr1t_l9r_go_relaxed.owl ecdysone-mediated induction of autophagic cell death of salivary gland cells|ecdysone-mediated induction of salivary gland cell programmed cell death by autophagy|ecdysone-mediated induction of programmed cell death of salivary gland cells by autophagy biological_process owl:Class GO:0035071 biolink:NamedThing salivary gland cell autophagic cell death The stage-specific programmed cell death of salivary gland cells during salivary gland histolysis. tmpzr1t_l9r_go_relaxed.owl salivary gland cell death|programmed cell death of salivary gland cells by autophagy|autophagic cell death of salivary gland cells|salivary gland cell programmed cell death by autophagy biological_process owl:Class GO:0010063 biolink:NamedThing positive regulation of trichoblast fate specification Any process that induces or promotes trichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl up regulation of trichoblast fate|activation of trichoblast fate|stimulation of trichoblast fate|up-regulation of trichoblast fate|upregulation of trichoblast fate biological_process owl:Class GO:1903953 biolink:NamedThing negative regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization. tmpzr1t_l9r_go_relaxed.owl down-regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|down regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|down regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|downregulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|down-regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|negative regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|inhibition of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization|downregulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization|inhibition of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization nc 2015-02-24T10:32:16Z biological_process owl:Class GO:0045282 biolink:NamedThing plasma membrane succinate dehydrogenase complex A multimeric complex which consists of flavoprotein (subunit A ; InterPro:IPR003952), iron-sulfur protein (subunit B) and membrane-bound cytochrome b560 (subunit C; InterPro:IPR000701). In some Archaea, the membrane-bound subunits (C or C and D) do not necessarily contain heme. Membrane-bound subunits can bind/react with quinones. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl succinate dehydrogenase complex cellular_component owl:Class GO:0002415 biolink:NamedThing immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor The process of transporting polymeric IgA and polymeric IgM immunoglobulin, via transcytosis mediated by the polymeric immunoglobulin receptor (pIgR), from the basolateral surface to apical surface of an epithelial cell. At the apical surface the immunoglobulin binding portion of the pIgRis cleaved and remains bound to the transported immunoglobulin as secretory component (SC). The same process is used for the transport and excretion of IgA immune complexes to the luminal surface of the mucosa. tmpzr1t_l9r_go_relaxed.owl antibody transcytosis mediated by pIgR|immunoglobulin transcytosis mediated by pIgR biological_process owl:Class GO:0070498 biolink:NamedThing interleukin-1-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-1 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-1-mediated signaling pathway|interleukin-1-mediated signalling pathway|interleukin-1 beta-mediated signaling pathway|interleukin-1 alpha-mediated signaling pathway|IL-1 beta-mediated signaling pathway|IL-1 alpha-mediated signaling pathway biological_process owl:Class GO:0005658 biolink:NamedThing alpha DNA polymerase:primase complex A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which are capable of catalyzing the synthesis of an RNA primer on the lagging strand of replicating DNA and the subsequent synthesis of a smal stretch of DNA. The smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis. tmpzr1t_l9r_go_relaxed.owl heterotetrameric polymerase alpha holoenzyme|primosome|DNA polymerase alpha:primase complex|pol-prim cellular_component owl:Class GO:0034348 biolink:NamedThing type III interferon receptor activity Combining with a type III interferon and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl interferon-lambda receptor activity Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. molecular_function owl:Class GO:0034347 biolink:NamedThing type III interferon binding Binding to a type III interferon. Interferon lambda is the only member of the type III interferon found so far. tmpzr1t_l9r_go_relaxed.owl interferon-lambda binding Note that IL-28A, IL-28B, and IL-29 are types of interferon-lambda. molecular_function owl:Class GO:1902433 biolink:NamedThing positive regulation of water channel activity involved in maintenance of lens transparency Any positive regulation of water channel activity that is involved in maintenance of lens transparency. tmpzr1t_l9r_go_relaxed.owl up regulation of water channel activity involved in preservation of lens transparency|upregulation of aquaporin involved in preservation of lens transparency|up regulation of aquaporin involved in maintenance of lens transparency|up regulation of aquaporin involved in preservation of lens transparency|aquaporin activation involved in preservation of lens transparency|up-regulation of water channel activity involved in maintenance of lens transparency|up-regulation of water channel activity involved in maintenance of ocular lens transparency|positive regulation of aquaporin involved in maintenance of ocular lens transparency|positive regulation of water channel activity involved in preservation of lens transparency|up regulation of aquaporin involved in maintenance of ocular lens transparency|aquaporin activation involved in maintenance of lens transparency|upregulation of water channel activity involved in maintenance of ocular lens transparency|up-regulation of water channel activity involved in preservation of lens transparency|upregulation of water channel activity involved in maintenance of lens transparency|activation of water channel activity involved in maintenance of lens transparency|aquaporin activation involved in maintenance of ocular lens transparency|upregulation of aquaporin involved in maintenance of ocular lens transparency|up-regulation of aquaporin involved in maintenance of ocular lens transparency|up-regulation of aquaporin involved in preservation of lens transparency|positive regulation of aquaporin involved in preservation of lens transparency|positive regulation of water channel activity involved in maintenance of ocular lens transparency|up-regulation of aquaporin involved in maintenance of lens transparency|activation of water channel activity involved in maintenance of ocular lens transparency|activation of water channel activity involved in preservation of lens transparency|up regulation of water channel activity involved in maintenance of ocular lens transparency|upregulation of aquaporin involved in maintenance of lens transparency|activation of aquaporin involved in maintenance of lens transparency|up regulation of water channel activity involved in maintenance of lens transparency|activation of aquaporin involved in preservation of lens transparency|activation of aquaporin involved in maintenance of ocular lens transparency|upregulation of water channel activity involved in preservation of lens transparency|positive regulation of aquaporin involved in maintenance of lens transparency bf 2013-10-02T12:58:00Z biological_process owl:Class GO:0036438 biolink:NamedThing maintenance of lens transparency A homeostatic process in which the lens is maintained in a highly refractive, transparent state to allow for optimal focusing of light on the retina. tmpzr1t_l9r_go_relaxed.owl maintenance of ocular lens transparency|preservation of lens transparency bf 2013-09-23T13:51:09Z biological_process owl:Class GO:1905391 biolink:NamedThing regulation of protein localization to cell division site involved in cell separation after cytokinesis Any regulation of protein localization to cell division site that is involved in cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of protein localisation to cell division site involved in cytokinetic cell separation|regulation of protein localisation to cell division site involved in cell separation after cytokinesis|regulation of protein localisation to cell division site involved in mitotic cytokinetic cell separation|regulation of protein localisation to cell division site involved in cell separation following cytokinesis vw 2016-08-22T09:40:47Z biological_process owl:Class GO:0000331 biolink:NamedThing contractile vacuole A specialized vacuole of eukaryotic cells, especially Protozoa, that fills with water from the cytoplasm and then discharges this externally by the opening of contractile vacuole pores. One of its functions is osmoregulatory. tmpzr1t_l9r_go_relaxed.owl central bladder|central vacuole Wikipedia:Contractile_vacuole cellular_component owl:Class GO:0062159 biolink:NamedThing contractile vacuole complex A non-membrane-bounded organelle of eukaryotic cells, especially Protozoa, that fills with water from the cytoplasm and then discharges this externally. One of its functions is osmoregulatory. tmpzr1t_l9r_go_relaxed.owl CVC dph 2019-09-26T14:20:14Z cellular_component owl:Class GO:0031424 biolink:NamedThing keratinization The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032740 biolink:NamedThing positive regulation of interleukin-17 production Any process that activates or increases the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-17 secretion|upregulation of interleukin-17 production|activation of interleukin-17 production|positive regulation of Cytotoxic T-lymphocyte-associated antigen 8 production|positive regulation of IL-17 production|positive regulation of CTLA-8 production|up-regulation of interleukin-17 production|positive regulation of interleukin-17 biosynthetic process|stimulation of interleukin-17 production|up regulation of interleukin-17 production GO:0045380|GO:1905078 biological_process owl:Class GO:0042979 biolink:NamedThing ornithine decarboxylase regulator activity Binds to and modulates the activity of the enzyme ornithine decarboxylase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097102 biolink:NamedThing endothelial tip cell fate specification The process involved in the specification of identity of an endothelial tip cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. An endothelial tip cell is a specialized endothelial cell localized to the leading edge of an angiogenic sprout that senses extracellular signals and guides the directed growth of blood vessels. tmpzr1t_l9r_go_relaxed.owl angiogenic tip cell fate specification pr 2011-07-27T10:29:00Z biological_process owl:Class GO:0140397 biolink:NamedThing versiconal hemiacetal acetate esterase activity Catalyzes the reactions: versiconal hemiacetal acetate + H(2)O <=> versiconal + acetate, as well as versiconol acetate + H(2)O <=> versiconol + acetate. tmpzr1t_l9r_go_relaxed.owl RHEA:35715|EC:3.1.1.94|MetaCyc:RXN-9493|MetaCyc:RXN-9488 pg 2019-11-29T10:14:17Z molecular_function owl:Class GO:0055119 biolink:NamedThing relaxation of cardiac muscle The process in which the extent of cardiac muscle contraction is reduced. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001980 biolink:NamedThing regulation of systemic arterial blood pressure by ischemic conditions The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system. tmpzr1t_l9r_go_relaxed.owl ischemic control of blood pressure|CNS ischemic response|ischemic regulation of systemic arterial blood pressure biological_process owl:Class GO:0042557 biolink:NamedThing eukaryotic elongation factor-2 kinase activator activity Binds to and increases the activity of the enzyme eukaryotic elongation factor-2 kinase. tmpzr1t_l9r_go_relaxed.owl eEF-2 kinase activator molecular_function owl:Class GO:0000800 biolink:NamedThing lateral element A proteinaceous core found between sister chromatids during meiotic prophase. tmpzr1t_l9r_go_relaxed.owl axial element In species that have a synaptonemal complex, the lateral elements are part of this complex. S.pombe is an example of a species that lacks a (canonical) synaptonemal complex, but still has lateral elements. cellular_component owl:Class GO:0000795 biolink:NamedThing synaptonemal complex A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Synaptonemal_complex GO:0005716 cellular_component owl:Class GO:0050115 biolink:NamedThing myosin-light-chain-phosphatase activity Catalysis of the reaction: myosin light-chain phosphate + H2O = myosin light chain + phosphate. tmpzr1t_l9r_go_relaxed.owl myosin-light-chain phosphatase activity|myosin-light-chain-phosphate phosphohydrolase activity|myosin light chain kinase phosphatase activity|protein phosphatase 2A|myosin light-chain kinase phosphatase activity|[Myosin light-chain]-phosphatase activity Reactome:R-HSA-419232|EC:3.1.3.53|MetaCyc:MYOSIN-LIGHT-CHAIN-PHOSPHATASE-RXN molecular_function owl:Class GO:0036242 biolink:NamedThing glutamate catabolic process to succinate via 2-oxoglutarate-dependent GABA-transaminase activity The chemical reactions and pathways resulting in the breakdown of glutamate into succinate, that includes the conversion of 4-aminobutyrate to succinate semialdehyde by the 2-oxoglutarate-dependent gamma aminobutyrate (GABA) transaminase. tmpzr1t_l9r_go_relaxed.owl glutamate degradation via gamma aminobutyrate transaminase activity MetaCyc:PWY-4321|MetaCyc:PWY3O-210 While mammals only have 2-oxoglutarate-dependent GABA-transaminase, both 2-oxoglutarate-dependent and pyruvate-dependent GABA-transaminase activities have been detected in plants. bf 2012-05-23T02:28:33Z biological_process owl:Class GO:0034386 biolink:NamedThing 4-aminobutyrate:2-oxoglutarate transaminase activity Catalysis of the reaction: 4-aminobutanoate + 2-oxoglutarate = succinate semialdehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 4-aminobutyric acid 2-ketoglutaric acid aminotransferase activity|4-aminobutyrate-2-oxoglutarate transaminase activity|gamma-aminobutyric acid-alpha-ketoglutaric acid aminotransferase activity|gamma-aminobutyrate:alpha-oxoglutarate aminotransferase activity|GABA-2-oxoglutarate aminotransferase activity|GABA-alpha-ketoglutarate aminotransferase activity|GABA-alpha-ketoglutaric acid transaminase activity|4-aminobutyrate-2-ketoglutarate aminotransferase activity|gamma-aminobutyrate-alpha-ketoglutarate transaminase activity|GABA-oxoglutarate aminotransferase activity|4-aminobutyrate-2-oxoglutarate aminotransferase activity|gamma-aminobutyric acid-2-oxoglutarate transaminase activity|gamma-aminobutyric acid-alpha-ketoglutarate transaminase activity|gamma-aminobutyrate-alpha-ketoglutarate aminotransferase activity|4-aminobutanoate:2-oxoglutarate aminotransferase activity|GABA-2-oxoglutarate transaminase activity|GABA-alpha-oxoglutarate aminotransferase activity|GABA-alpha-ketoglutarate transaminase activity|GABA-oxoglutarate transaminase activity EC:2.6.1.19|MetaCyc:GABATRANSAM-RXN molecular_function owl:Class GO:0061456 biolink:NamedThing mesenchymal stem cell migration involved in uteric bud morphogenesis The orderly movement of a mesenchymal stem cell from one site to another contributing to the shaping of the ureteric bud. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl dph 2012-08-22T17:19:22Z biological_process owl:Class GO:0060675 biolink:NamedThing ureteric bud morphogenesis The process in which the ureteric bud is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T01:31:41Z biological_process owl:Class GO:2000221 biolink:NamedThing negative regulation of pseudohyphal growth Any process that stops, prevents, or reduces the frequency, rate or extent of pseudohyphal growth. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-03T04:37:00Z biological_process owl:Class GO:1900072 biolink:NamedThing positive regulation of sulfite transport Any process that activates or increases the frequency, rate or extent of sulfite transport. tmpzr1t_l9r_go_relaxed.owl upregulation of sulphite transport|activation of sulphite transport|up-regulation of sulphite transport|upregulation of sulfite transport|activation of sulfite transport|up regulation of sulphite transport|up regulation of sulfite transport|up-regulation of sulfite transport|positive regulation of sulphite transport dph 2012-01-26T08:41:16Z biological_process owl:Class GO:0060657 biolink:NamedThing regulation of mammary gland cord elongation by mammary fat precursor cell-epithelial cell signaling Any process that modulates the rate, frequency, or extent of mammary gland cord elongation as a result of a signal being created by a mesenchymal cell that is a precursor to the mammary fat and its subsequent reception and interpretation by an mammary cord epithelial cell. tmpzr1t_l9r_go_relaxed.owl regulation of mammary gland cord elongation by mammary fat precursor cell-epithelial cell signalling dph 2009-05-29T09:43:08Z biological_process owl:Class GO:0010054 biolink:NamedThing trichoblast differentiation The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair. tmpzr1t_l9r_go_relaxed.owl trichoblast cell differentiation biological_process owl:Class GO:0036019 biolink:NamedThing endolysosome An transient hybrid organelle formed by fusion of a late endosome with a lysosome, and in which active degradation takes place. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-13T02:35:13Z cellular_component owl:Class GO:0031948 biolink:NamedThing positive regulation of glucocorticoid biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids. tmpzr1t_l9r_go_relaxed.owl activation of glucocorticoid biosynthetic process|upregulation of glucocorticoid biosynthetic process|up regulation of glucocorticoid biosynthetic process|up-regulation of glucocorticoid biosynthetic process|stimulation of glucocorticoid biosynthetic process biological_process owl:Class GO:0021880 biolink:NamedThing Notch signaling pathway involved in forebrain neuron fate commitment The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway involved in forebrain neuron fate commitment biological_process owl:Class GO:0061438 biolink:NamedThing renal system vasculature morphogenesis The process in which the renal system vasculature is generated and organized. Morphogenesis pertains to the creation of form. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-08T12:21:56Z biological_process owl:Class GO:0060083 biolink:NamedThing smooth muscle contraction involved in micturition The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body. tmpzr1t_l9r_go_relaxed.owl urinary bladder smooth muscle contraction involved in micturition|smooth muscle contraction involved in urination biological_process owl:Class GO:0042020 biolink:NamedThing interleukin-23 receptor activity Combining with interleukin-23 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-23R|IL-23 receptor activity molecular_function owl:Class GO:0038155 biolink:NamedThing interleukin-23-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-23 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-23-mediated signalling pathway|IL-23-mediated signaling pathway bf 2012-05-11T11:49:56Z biological_process owl:Class GO:0009640 biolink:NamedThing photomorphogenesis The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. tmpzr1t_l9r_go_relaxed.owl plant development in response to light Wikipedia:Photomorphogenesis biological_process owl:Class GO:0034088 biolink:NamedThing maintenance of mitotic sister chromatid cohesion The process in which the association between sister chromatids of a replicated chromosome is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic cohesion stability biological_process owl:Class GO:0021628 biolink:NamedThing olfactory nerve formation The process that gives rise to the olfactory nerve. This process pertains to the initial formation of a structure from unspecified parts. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem. tmpzr1t_l9r_go_relaxed.owl CN I biosynthesis|CN I formation biological_process owl:Class GO:0021627 biolink:NamedThing olfactory nerve morphogenesis The process in which the anatomical structure of the olfactory nerve is generated and organized. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem. tmpzr1t_l9r_go_relaxed.owl CN I morphogenesis biological_process owl:Class GO:0120059 biolink:NamedThing negative regulation of small intestinal transit Any process that decreases the frequency, rate or extent of any small intestinal transit process, the migration of ingested material along the length of the small intestine. tmpzr1t_l9r_go_relaxed.owl negative regulation of small intestine transit|negative regulation of small bowel transit krc 2017-06-13T20:58:23Z biological_process owl:Class GO:0055002 biolink:NamedThing striated muscle cell development The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050253 biolink:NamedThing retinyl-palmitate esterase activity Catalysis of the reaction: retinyl palmitate + H2O = retinol + palmitate + H+. tmpzr1t_l9r_go_relaxed.owl retinyl palmitate hydrolyase activity|retinyl-palmitate palmitohydrolase activity|retinyl ester hydrolase activity|retinyl palmitate hydrolase activity Reactome:R-HSA-975593|MetaCyc:RETINYL-PALMITATE-ESTERASE-RXN|Reactome:R-HSA-2404133|Reactome:R-HSA-975594|EC:3.1.1.21|RHEA:21508|Reactome:R-HSA-8848355|KEGG_REACTION:R02368 molecular_function owl:Class GO:0072171 biolink:NamedThing mesonephric tubule morphogenesis The process in which the anatomical structures of a mesonephric tubule are generated and organized. A mesonephric tubule is an epithelial tube that is part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:02:13Z biological_process owl:Class GO:0070162 biolink:NamedThing adiponectin secretion The regulated release of adiponectin, a protein hormone, by adipose tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990073 biolink:NamedThing perforation plate A cell wall part that is the part of a wall of a vessel member and bears one or more openings (perforations). tmpzr1t_l9r_go_relaxed.owl Part of a vessel member (PO:0002003). May be simple, with one perforation, or multiperforate, with more than one perforation. Perforation plates are usually on the end walls of a cell, but may also be on the side walls. tb 2013-03-29T00:53:28Z cellular_component owl:Class GO:0061854 biolink:NamedThing positive regulation of neuroblast migration Any process that activates or increases the frequency, rate or extent of neuroblast migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-03-08T18:22:30Z biological_process owl:Class GO:1990395 biolink:NamedThing meiotic spindle pole body organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the meiotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl tb 2014-06-06T01:41:05Z biological_process owl:Class GO:0008597 biolink:NamedThing calcium-dependent protein serine/threonine phosphatase regulator activity Binds to and modulates of the activity of the enzyme calcium-dependent protein serine/threonine phosphatase. tmpzr1t_l9r_go_relaxed.owl calcium-dependent protein serine/threonine phosphatase, intrinsic regulator activity Reactome:R-HSA-139906 molecular_function owl:Class GO:0048475 biolink:NamedThing coated membrane A single or double lipid bilayer with any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090489 biolink:NamedThing L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating, decarboxylating) Catalyzes the multi-step reaction: L-Tryptophan + 2 Oxygen + 2 NADPH + 2 H+ = Indole-3-acetaldehyde oxime + 3 H2O + 2 NADP+ + CO2. The individual reactions are: (1a) L-tryptophan + O2 + NADPH + H+ = N-hydroxy-L-tryptophan + NADP+ + H2O,(1b) N-hydroxy-L-tryptophan + O2 + NADPH + H+ = N,N-dihydroxy-L-tryptophan + NADP+ + H2O, and (1c) N,N-dihydroxy-L-tryptophan = (E)-indol-3-ylacetaldoxime + CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl tryptophan N-monooxygenase activity tb 2012-10-16T16:22:19Z molecular_function owl:Class GO:0090490 biolink:NamedThing L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating) Catalyzes the reaction: L-Tryptophan + Oxygen + NADPH + H+ = N-Hydroxy-L-tryptophan + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-16T16:27:19Z molecular_function owl:Class GO:0009925 biolink:NamedThing basal plasma membrane The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097356 biolink:NamedThing perinucleolar compartment The perinucleolar compartment (PNC) is a subnuclear structure associated with, but structurally distinct from, the nucleolus. The PNC contains large amounts of the heterogeneous nuclear ribonucleoprotein complex (hnRNP) called hnRNP 1 (PTB). Many RNA binding proteins as well as RNA polymerase III transcripts are highly enriched in this compartment. PTB and pol III transcripts are required for the integrity of the PNC. tmpzr1t_l9r_go_relaxed.owl perinucleolar region pr 2012-07-03T05:11:01Z cellular_component owl:Class GO:0150107 biolink:NamedThing positive regulation of protein localization to cell-cell junction Any process that activates or increases the frequency, rate or extent of protein localization to cell-cell junction. tmpzr1t_l9r_go_relaxed.owl bc 2019-06-11T11:23:58Z biological_process owl:Class GO:0140505 biolink:NamedThing regulation of microlipophagy Any process that modulates the frequency, rate or extent of microlipophagy, the microautophagy-mediated direct internalization of lipid droplets into a lysosome-like vacuole during nutrient depletion. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19869 pg 2020-08-14T12:56:29Z biological_process owl:Class GO:0140504 biolink:NamedThing microlipophagy Microautophagy-mediated direct internalization of lipid droplets into a lysosome-like vacuole during nutrient depletion, such as during the transition to stationary phase or in response to nutrient limitation. Microlipophagy is mediated by the formation of sterol-enriched vacuolar microdomains at sites of engulfment. Initiation of microautophagy is defined as the point where liquid-ordered microdomains are formed at sites of engulfment, that requires S. cerevisiae Atg32p and Atg21p, as well as Niemann-Pick type C (NPC) sterol transporter proteins, Ncr1p and Npc2p. This is followed by redistribution of Atg14p from ER exit sites onto liquid-ordered vacuole membrane domains through interaction with stabilized AMP-activated protein kinase (AMPK), and together with Atg6p facilities docking and internalization of lipid droplets (LDs) at sites of invagination. tmpzr1t_l9r_go_relaxed.owl lipid droplet autophagy https://github.com/geneontology/go-ontology/issues/19869 pg 2020-08-14T12:53:43Z biological_process owl:Class GO:0097563 biolink:NamedThing left middle basal body pair Set of two basal bodies found in Giardia species (trophozoite stage). It comprises the caudal and posteriolateral basal bodies located to the right of the left nucleus of the trophozoite when viewed dorsally. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T16:11:14Z cellular_component owl:Class GO:0071811 biolink:NamedThing positive regulation of fever generation by positive regulation of prostaglandin biosynthesis Any process that increases the rate or extent of fever generation via positive regulation of the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T05:10:05Z biological_process owl:Class GO:0048855 biolink:NamedThing adenohypophysis morphogenesis The process in which the anatomical structures of the adenohypophysis are generated and organized. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl anterior pituitary morphogenesis|adenophysis morphogenesis|anterior pituitary gland morphogenesis biological_process owl:Class GO:0042680 biolink:NamedThing compound eye cone cell fate determination The process in which a cell becomes capable of differentiating autonomously into a compound eye cone cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl GO:0042677 biological_process owl:Class GO:0038066 biolink:NamedThing p38MAPK cascade An intracellular protein kinase cascade containing at least a p38 MAPK, a MAPKK and a MAP3K. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. tmpzr1t_l9r_go_relaxed.owl p38 cascade|p38 MAPK cascade bf 2012-01-25T11:51:24Z biological_process owl:Class GO:0070129 biolink:NamedThing regulation of mitochondrial translation Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial protein anabolism|regulation of mitochondrial protein biosynthesis|regulation of mitochondrial protein formation|regulation of mitochondrial protein synthesis biological_process owl:Class GO:0032543 biolink:NamedThing mitochondrial translation The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code. tmpzr1t_l9r_go_relaxed.owl mitochondrial protein biosynthesis|mitochondrial protein anabolism|mitochondrial protein formation|mitochondrial protein synthesis|mitochondrial protein translation biological_process owl:Class GO:1903379 biolink:NamedThing regulation of mitotic chromosome condensation Any process that modulates the frequency, rate or extent of mitotic chromosome condensation. tmpzr1t_l9r_go_relaxed.owl al 2014-08-26T13:57:13Z biological_process owl:Class GO:1905258 biolink:NamedThing regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to nitrosative stress. tmpzr1t_l9r_go_relaxed.owl regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress|regulation of nitrosative stress-induced apoptosis bf 2016-06-13T17:04:59Z biological_process owl:Class GO:0035288 biolink:NamedThing anterior head segmentation Partitioning the insect head anlage into procephalic (labral, (ocular), antennal and intercalary) segments. The procephalic segments lie anterior to the gnathal (posterior head) segments, and are pattered by different segmentation gene cascades to the abdominal, thoracic and posterior head (gnathal) segments. tmpzr1t_l9r_go_relaxed.owl procephalic segmentation See also the fly_anatomy.ontology term 'procephalic segment ; FBbt:00000007' and its children. biological_process owl:Class GO:0015126 biolink:NamedThing canalicular bile acid transmembrane transporter activity The directed movement of bile acid and bile salts out of a hepatocyte and into the bile canaliculus by means of an agent such as a transporter or pore. Bile canaliculi are the thin tubes formed by hepatocyte membranes. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015722 biolink:NamedThing canalicular bile acid transport Enables the transfer of bile acid from one side of a hepatocyte plasma membrane into a bile canaliculus. Bile canaliculi are the thin tubes formed by hepatocyte membranes. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038193 biolink:NamedThing thromboxane A2 signaling pathway The series of molecular signals generated as a consequence of thromboxane A2 binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl TXA(2) receptor signaling|TXA2 signaling bf 2013-09-02T16:07:01Z biological_process owl:Class GO:1902674 biolink:NamedThing right posteriolateral basal body Any ciliary basal body that is part of a right posteriolateral flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl cilial basal body of right posterolateral flagellum|ciliary basal body of right posterolateral flagellum|cilium basal body of right posteriolateral flagellum|microtubule basal body of right posterolateral flagellum|cilium basal body of right posterolateral flagellum|right posteriolateral flagellum ciliary basal body|cilial basal body of right posteriolateral cilium|microtubule basal body of right posteriolateral cilium|microtubule basal body of right posteriolateral flagellum|ciliary basal body of right posterolateral cilium|cilial basal body of right posterolateral cilium|cilial basal body of right posteriolateral flagellum|microtubule basal body of right posterolateral cilium|ciliary basal body of right posteriolateral flagellum|ciliary basal body of right posteriolateral cilium|cilium basal body of right posteriolateral cilium|cilium basal body of right posterolateral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:52:04Z cellular_component owl:Class GO:1902365 biolink:NamedThing positive regulation of protein localization to spindle pole body Any process that activates or increases the frequency, rate or extent of protein localization to spindle pole body. tmpzr1t_l9r_go_relaxed.owl up regulation of protein localisation to spindle pole body|up-regulation of protein localization to spindle pole body|up-regulation of protein localisation to spindle pole body|activation of protein localisation to spindle pole body|positive regulation of protein localisation to spindle pole body|activation of protein localization to spindle pole body|up regulation of protein localization to spindle pole body|upregulation of protein localisation to spindle pole body|upregulation of protein localization to spindle pole body vw 2013-08-15T16:38:31Z biological_process owl:Class GO:0044155 biolink:NamedThing host caveola A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:00:55Z cellular_component owl:Class GO:1904189 biolink:NamedThing positive regulation of transformation of host cell by virus Any process that activates or increases the frequency, rate or extent of transformation of host cell by virus. tmpzr1t_l9r_go_relaxed.owl upregulation of transformation of host cell by virus|up regulation of viral transformation of host cell|up-regulation of transformation of host cell by virus|activation of viral transformation of host cell|upregulation of viral transformation of host cell|activation of transformation of host cell by virus|positive regulation of viral transformation of host cell|positive regulation of viral transformation|up regulation of transformation of host cell by virus|activation of viral transformation|up-regulation of viral transformation of host cell|up-regulation of viral transformation|upregulation of viral transformation|up regulation of viral transformation pga 2015-05-05T15:30:11Z biological_process owl:Class GO:0035735 biolink:NamedThing intraciliary transport involved in cilium assembly The bidirectional movement of large protein complexes along microtubules within a cilium that contributes to cilium assembly. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport involved in cilium morphogenesis|intraflagellar transport|intraciliary transport involved in cilium morphogenesis Reactome:R-HSA-5620924.2 bf 2011-03-17T10:55:42Z biological_process owl:Class GO:0043630 biolink:NamedThing ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process The enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end of a non-coding RNA, occurring as part of the process of polyadenylation-dependent non-coding RNA catabolism. tmpzr1t_l9r_go_relaxed.owl ncRNA polyadenylation involved in poly(A)-dependent ncRNA catabolic process|ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process biological_process owl:Class GO:0016531 biolink:NamedThing copper chaperone activity Directly binding to and delivering copper ions to a target protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004948 biolink:NamedThing calcitonin receptor activity Combining with calcitonin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900016 biolink:NamedThing negative regulation of cytokine production involved in inflammatory response Any process that stops, prevents or reduces the frequency, rate or extent of cytokine production involved in inflammatory response. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytokine production involved in acute inflammatory response|down regulation of cytokine production involved in inflammatory response|down regulation of cytokine production involved in acute inflammatory response rph 2012-01-11T09:34:31Z biological_process owl:Class GO:0002534 biolink:NamedThing cytokine production involved in inflammatory response The synthesis or release of a cytokine following a inflammatory stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl cytokine production involved in acute inflammatory response biological_process owl:Class GO:0060550 biolink:NamedThing positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:12:33Z biological_process owl:Class GO:0042132 biolink:NamedThing fructose 1,6-bisphosphate 1-phosphatase activity Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl fructose 1,6-bisphosphate phosphatase activity|D-fructose-1,6-bisphosphate 1-phosphohydrolase activity|fructose bisphosphate phosphatase activity|fructose 1,6-diphosphate phosphatase activity|fructose diphosphate phosphatase activity|fructose 1,6-diphosphatase activity|hexosediphosphatase activity|hexose diphosphatase activity|fructose-bisphosphatase activity|fructose 1,6-bisphosphatase activity|D-fructose-1,6-bisphosphate phosphatase activity|hexose bisphosphatase activity|fructose-1,6-bisphosphatase activity|fructose diphosphatase activity|FBPase activity|D-fructose 1,6-diphosphatase activity RHEA:11064|MetaCyc:F16BDEPHOS-RXN|EC:3.1.3.11|Reactome:R-HSA-70479 molecular_function owl:Class GO:0070132 biolink:NamedThing regulation of mitochondrial translational initiation Any process that modulates the frequency, rate or extent of the process preceding formation of the peptide bond between the first two amino acids of a protein in a mitochondrion. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial translation initiation biological_process owl:Class GO:0033282 biolink:NamedThing protein C inhibitor-acrosin complex A heterodimeric protein complex of protein C inhibitor (SERPINA5) and acrosin; formation of the complex inhibits the protease activity of acrosin. tmpzr1t_l9r_go_relaxed.owl serpin A5-acrosin complex|PCI-acrosin complex|SERPINA5-acrosin complex|plasma serine protease inhibitor-acrosin complex|PCI-ACR complex cellular_component owl:Class GO:0002328 biolink:NamedThing pro-B cell differentiation The process in which a precursor cell type acquires the specialized features of a pro-B cell. Pro-B cells are the earliest stage of the B cell lineage and undergo heavy chain D and J gene rearrangements, although they are not fully committed. tmpzr1t_l9r_go_relaxed.owl pro-B lymphocyte differentiation|pro-B cell development biological_process owl:Class GO:0007054 biolink:NamedThing spindle assembly involved in male meiosis I The formation of the spindle during meiosis I of a meiotic cell cycle in males. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male meiosis I spindle assembly biological_process owl:Class GO:1905889 biolink:NamedThing positive regulation of cellular response to very-low-density lipoprotein particle stimulus Any process that activates or increases the frequency, rate or extent of cellular response to very-low-density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl activation of cellular response to VLDL particle stimulus|upregulation of cellular response to very-low-density lipoprotein particle stimulus|up-regulation of cellular response to VLDL particle stimulus|up regulation of cellular response to VLDL particle stimulus|activation of cellular response to very-low-density lipoprotein particle stimulus|positive regulation of cellular response to VLDL particle stimulus|upregulation of cellular response to VLDL particle stimulus|up-regulation of cellular response to very-low-density lipoprotein particle stimulus|up regulation of cellular response to very-low-density lipoprotein particle stimulus bc 2017-02-01T10:09:34Z biological_process owl:Class GO:0051484 biolink:NamedThing isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway that contributes to terpenoid biosynthesis. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl isopentenyl diphosphate anabolism, mevalonate-independent pathway, during terpenoid anabolism|isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway involved in terpenoid biosynthetic process|isopentenyl diphosphate formation, mevalonate-independent pathway, during terpenoid biosynthesis|isopentenyl diphosphate synthesis, mevalonate-independent pathway, during terpenoid synthesis|isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, during terpenoid biosynthetic process|isopentenyl diphosphate formation, mevalonate-independent pathway, during terpenoid formation MetaCyc:NONMEVIPP-PWY biological_process owl:Class GO:0051483 biolink:NamedThing terpenoid biosynthetic process, mevalonate-independent The chemical reactions and pathways resulting in the formation of terpenoids, independent of mevalonate. Isopentenyl diphosphate (IPP) is the fundamental unit in terpenoid biosynthesis, and in mevalonate-independent biosynthesis, it is produced from pyruvate and glyceraldehyde 3-phosphate via intermediates including 1-deoxy-D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl mevalonate-independent terpenoid biosynthesis|mevalonate-independent terpene biosynthesis|mevalonate-independent terpene biosynthetic process|terpenoid synthesis, mevalonate-independent|terpene biosynthetic process, mevalonate-independent|mevalonate-independent terpenoid biosynthetic process|terpenoid anabolism, mevalonate-independent|terpenoid formation, mevalonate-independent|terpene biosynthesis, mevalonate-independent biological_process owl:Class GO:0044331 biolink:NamedThing cell-cell adhesion mediated by cadherin The attachment of one cell to another cell via a cadherin, transmembrane proteins having repeating extracellular calcium ion binding domains. tmpzr1t_l9r_go_relaxed.owl jl 2010-08-20T10:24:54Z biological_process owl:Class GO:0034403 biolink:NamedThing alignment of 3' and 5' splice sites of mRNA Recognition of both the 5' and 3'-splice sites and positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur. tmpzr1t_l9r_go_relaxed.owl alignment of 3' and 5' splice sites of nuclear mRNA biological_process owl:Class GO:0000350 biolink:NamedThing generation of catalytic spliceosome for second transesterification step Conformational rearrangement of the spliceosomal complex containing the RNA products from the 1st step of splicing to form the catalytic site for the second step of splicing. tmpzr1t_l9r_go_relaxed.owl catalytic spliceosome assembly for second transesterification step|spliceosomal A2-3 complex biosynthesis|formation of catalytic spliceosome for second transesterification step|spliceosomal A2-3 complex formation|spliceosomal C2 complex formation|lariat formation, 5'-splice site cleavage|formation of spliceosomal C1 complex|formation of catalytic U12-type spliceosome for second transesterification step|formation of spliceosomal A2-2 complex|spliceosomal C2 complex biosynthesis|formation of catalytic U2-type spliceosome for second transesterification step Note that this step represents formation of the A2-3 complex (yeast) or the C2 complex (mammalian). GO:0000359|GO:0000358 biological_process owl:Class GO:0075243 biolink:NamedThing oospore formation The process in which male and female gametangia develop and fuse to form an oospore, a thick-walled resting spore of Oomycetes and certain algae and fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900045 biolink:NamedThing negative regulation of protein K63-linked ubiquitination Any process that stops, prevents or reduces the frequency, rate or extent of protein K63-linked ubiquitination. tmpzr1t_l9r_go_relaxed.owl downregulation of protein K63-linked ubiquitination|down regulation of protein K63-linked ubiquitination|downregulation of protein K63-linked polyubiquitination|down-regulation of protein K63-linked ubiquitination|down-regulation of protein K63-linked polyubiquitination|down regulation of protein K63-linked polyubiquitination|negative regulation of protein K63-linked polyubiquitination|inhibition of protein K63-linked ubiquitination|inhibition of protein K63-linked polyubiquitination bf 2012-01-19T11:44:41Z biological_process owl:Class GO:0070534 biolink:NamedThing protein K63-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair. tmpzr1t_l9r_go_relaxed.owl protein K63-linked polyubiquitination biological_process owl:Class GO:0052807 biolink:NamedThing aflatoxin reductase (coenzyme F420) activity Catalysis of the reaction: aflatoxin + 1,5-dihydrocoenzyme F420 = aflatoxin with reduced furanocoumarin moiety + coenzyme F420. 1,5-dihydrocoenzyme F420 is also known as reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl coenzyme F420-aflatoxin reductase activity|aflatoxin:reduced coenzyme F420 reductase activity|coenzyme F420-dependent aflatoxin reductase activity|aflatoxin:coenzyme F420 oxidoreductase activity ai 2011-09-22T04:08:13Z molecular_function owl:Class GO:1904531 biolink:NamedThing positive regulation of actin filament binding Any process that activates or increases the frequency, rate or extent of actin filament binding. tmpzr1t_l9r_go_relaxed.owl upregulation of actin filament binding|activation of actin filament binding|positive regulation of F-actin binding|upregulation of actin cross-linking activity|up regulation of actin cross-linking activity|upregulation of F-actin binding|activation of F-actin binding|up-regulation of F-actin binding|positive regulation of actin cross-linking activity|up-regulation of actin filament binding|up-regulation of actin cross-linking activity|up regulation of F-actin binding|activation of actin cross-linking activity|up regulation of actin filament binding als 2015-07-30T10:42:01Z biological_process owl:Class GO:0021693 biolink:NamedThing cerebellar Purkinje cell layer structural organization The process that contributes to the act of creating the structural organization of the cerebellar Purkinje cell layer. This process pertains to the physical shaping of a rudimentary structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. tmpzr1t_l9r_go_relaxed.owl cerebellar Purkinje cell layer structural organisation biological_process owl:Class GO:0016174 biolink:NamedThing NAD(P)H oxidase H2O2-forming activity Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl NAD(P)H oxidase activity|NAD(P)H:oxygen oxidoreductase activity|thyroid NADPH oxidase activity|thyroid oxidase activity|THOX2 activity|dual oxidase activity|ThOX activity|thyroid oxidase 2 activity|p138tox|NADPH oxidase Reactome:R-HSA-5693681|Reactome:R-HSA-9698758|EC:1.6.3.1 molecular_function owl:Class GO:1901196 biolink:NamedThing positive regulation of calcium-mediated signaling involved in cellular response to salt stress Any positive regulation of calcium-mediated signaling that is involved in cellular response to salt stress. tmpzr1t_l9r_go_relaxed.owl stimulation of calcium-mediated signaling involved in cellular response to ionic osmotic stress|upregulation of calcium-mediated signaling involved in cellular salinity response|up-regulation of calcium-mediated signaling involved in cellular response to ionic osmotic stress|activation of calcium-mediated signaling involved in cellular response to salt stress|stimulation of calcium-mediated signaling involved in cellular salinity response|up regulation of calcium-mediated signaling involved in cellular response to salt stress|activation of calcium-mediated signaling involved in cellular salinity response|up-regulation of calcium-mediated signaling involved in cellular salinity response|positive regulation of calcium-mediated signalling involved in cellular response to salt stress|up regulation of calcium-mediated signaling involved in cellular response to ionic osmotic stress|activation of calcium-mediated signaling involved in cellular response to ionic osmotic stress|positive regulation of calcium-mediated signalling involved in cellular salinity response|positive regulation of calcium-mediated signaling involved in cellular salinity response|up regulation of calcium-mediated signaling involved in cellular salinity response|positive regulation of calcium-mediated signalling involved in cellular response to ionic osmotic stress|upregulation of calcium-mediated signaling involved in cellular response to salt stress|upregulation of calcium-mediated signaling involved in cellular response to ionic osmotic stress|up-regulation of calcium-mediated signaling involved in cellular response to salt stress|stimulation of calcium-mediated signaling involved in cellular response to salt stress|positive regulation of calcium-mediated signaling involved in cellular response to ionic osmotic stress al 2012-07-27T10:52:56Z biological_process owl:Class GO:0050653 biolink:NamedThing chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process The elongation of chondroitin sulfate proteoglycan chains by alternate addition of N-acetylhexosamine and GlcUA residues to the GAG-protein linkage region tetrasaccharide of chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate proteoglycan formation, polysaccharide chain formation|chondroitin sulfate proteoglycan chain elongation|chondroitin sulfate proteoglycan anabolism, polysaccharide chain anabolism|chondroitin sulphate proteoglycan biosynthesis, polysaccharide chain biosynthesis|chondroitin sulphate proteoglycan biosynthesis, polysaccharide chain biosynthetic process|chondroitin sulfate proteoglycan synthesis, polysaccharide chain synthesis|chondroitin sulfate proteoglycan formation, polysaccharide chain biosynthesis biological_process owl:Class GO:0050650 biolink:NamedThing chondroitin sulfate proteoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of chondroitin sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are chondroitin sulfate. Chondroitin sulfates are a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues; the repeat units consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate proteoglycan formation|chondroitin sulfate proteoglycan anabolism|chondroitin sulphate proteoglycan biosynthetic process|chondroitin sulfate proteoglycan biosynthesis|chondroitin sulphate proteoglycan biosynthesis|chondroitin sulfate proteoglycan synthesis biological_process owl:Class GO:0072660 biolink:NamedThing maintenance of protein location in plasma membrane Any process in which a protein is maintained in a specific location in the plasma membrane, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-14T02:46:08Z biological_process owl:Class GO:0097114 biolink:NamedThing NMDA glutamate receptor clustering The receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl NMDA receptor clustering|N-methyl-D-aspartate receptor clustering pr 2011-07-31T05:30:15Z biological_process owl:Class GO:0034170 biolink:NamedThing toll-like receptor 11 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 11. tmpzr1t_l9r_go_relaxed.owl toll-like receptor 11 signalling pathway|TLR11 signaling pathway biological_process owl:Class GO:0030226 biolink:NamedThing apolipoprotein receptor activity Combining with an apolipoprotein to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905498 biolink:NamedThing positive regulation of triplex DNA binding Any process that activates or increases the frequency, rate or extent of triplex DNA binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of triplex DNA binding|activation of triplex DNA binding|upregulation of triplex DNA binding|up regulation of triplex DNA binding ans 2016-09-26T14:57:25Z biological_process owl:Class GO:0045142 biolink:NamedThing triplex DNA binding Binding to a DNA triple helix. The formation of triple helical DNA has been evoked in several cellular processes including transcription, replication, and recombination. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097049 biolink:NamedThing motor neuron apoptotic process Any apoptotic process in a motor neuron, an efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement. tmpzr1t_l9r_go_relaxed.owl motor neuron apoptosis|motoneuron apoptosis pr 2011-05-04T02:21:43Z biological_process owl:Class GO:0120183 biolink:NamedThing positive regulation of focal adhesion disassembly Any process that activates or increases the frequency, rate or extent of disaggregation of a focal adhesion into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T18:27:19Z biological_process owl:Class GO:0097614 biolink:NamedThing dinoflagellate hypocone The part of a dinoflagellate cell below the cingulum; also referred to as the posterior portion of a dinoflagellate cell. It is separated from the epicone by the cingulum. tmpzr1t_l9r_go_relaxed.owl hypotheca|hyposome|hypocone The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-06-09T11:35:07Z cellular_component owl:Class GO:0071051 biolink:NamedThing polyadenylation-dependent snoRNA 3'-end processing Any process involved in forming the mature 3' end of a snoRNA molecule linked to prior polyadenylation of the 3'-end of the precursor snoRNA. tmpzr1t_l9r_go_relaxed.owl poly(A)-dependent snoRNA 3'-end processing krc 2009-08-25T03:47:24Z biological_process owl:Class GO:0021890 biolink:NamedThing olfactory bulb interneuron fate commitment The process in which the developmental fate of a neuroblast becomes restricted such that it will develop into an interneuron residing in the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150071 biolink:NamedThing negative regulation of arginase activity Any process that stops, prevents or reduces the frequency, rate or extent of arginase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T09:22:32Z biological_process owl:Class GO:0016014 biolink:NamedThing dystrobrevin complex A protein complex comprising alpha- and beta-dystrobrevin; forms part of the dystrophin glycoprotein complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035448 biolink:NamedThing extrinsic component of thylakoid membrane The component of a thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl peripheral to thylakoid membrane|extrinsic to thylakoid membrane bf 2010-04-16T10:11:32Z cellular_component owl:Class GO:0098946 biolink:NamedThing intrinsic component of presynaptic endocytic zone membrane The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to presynaptic acive zone membrane cellular_component owl:Class GO:0060734 biolink:NamedThing regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a cellular response to endoplasmic reticulum stress. tmpzr1t_l9r_go_relaxed.owl regulation of eIF2 alpha phosphorylation by ER stress|regulation of ER stress-induced eIF2 alpha phosphorylation|regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress dph 2009-06-12T02:15:16Z biological_process owl:Class GO:1990765 biolink:NamedThing colon smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry of the large intestine, exclusive of the rectum. The colon is that part of the large intestine that connects the small intestine to the rectum. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T18:29:21Z biological_process owl:Class GO:0046629 biolink:NamedThing gamma-delta T cell activation The change in morphology and behavior of a gamma-delta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. tmpzr1t_l9r_go_relaxed.owl gamma-delta T lymphocyte activation|gamma-delta T-cell activation|gamma-delta T-lymphocyte activation biological_process owl:Class GO:1900437 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl di 2012-04-25T05:55:17Z biological_process owl:Class GO:0003161 biolink:NamedThing cardiac conduction system development The process whose specific outcome is the progression of the cardiac conduction system over time, from its formation to the mature structure. The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat. tmpzr1t_l9r_go_relaxed.owl heart conduction system development|cardiac impulse conducting system development dph 2009-10-01T01:57:16Z biological_process owl:Class GO:0007510 biolink:NamedThing cardioblast cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a cardioblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034171 biolink:NamedThing regulation of toll-like receptor 11 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 11 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR11 signaling pathway|regulation of toll-like receptor 11 signalling pathway biological_process owl:Class GO:0030121 biolink:NamedThing AP-1 adaptor complex A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C). tmpzr1t_l9r_go_relaxed.owl AP-1 related adapter complex|HA1 clathrin adaptor|HA1 cellular_component owl:Class GO:0021846 biolink:NamedThing cell proliferation in forebrain The creation of greater cell numbers in the forebrain due to cell division of progenitor cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021713 biolink:NamedThing inferior olivary nucleus development The process whose specific outcome is the progression of the inferior olivary nucleus over time, from its formation to the mature structure. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements. tmpzr1t_l9r_go_relaxed.owl inferior olive development biological_process owl:Class GO:0048689 biolink:NamedThing formation of growth cone in injured axon The formation of a growth cone in an injured axon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003350 biolink:NamedThing pulmonary myocardium development The progression of the pulmonary myocardium over time, from its initial formation to the mature structure. The pulmonary myocardium is the myocardial tissue present in the pulmonary vein. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T12:50:06Z biological_process owl:Class GO:0061214 biolink:NamedThing mesonephric smooth muscle tissue development The process whose specific outcome is the progression of smooth muscle in the mesonephros over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:29:54Z biological_process owl:Class GO:0090368 biolink:NamedThing regulation of ornithine metabolic process Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:14:12Z biological_process owl:Class GO:0021808 biolink:NamedThing cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration The process that results in the fluctuations in intracellular calcium that are responsible for the initiation of movement as a component of the process of cerebral cortex glial-mediated radial migration. tmpzr1t_l9r_go_relaxed.owl cytosolic calcium signalling involved in the initiation of cell movement in glial-mediated radial cell migration biological_process owl:Class GO:0044638 biolink:NamedThing envenomation resulting in positive regulation of complement activation, classical pathway in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the positive regulation of complement activation via the classical pathway of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T04:51:36Z biological_process owl:Class GO:0045706 biolink:NamedThing positive regulation of salivary gland boundary specification Any process that activates or increases the frequency, rate or extent of salivary gland determination. tmpzr1t_l9r_go_relaxed.owl upregulation of salivary gland determination|up-regulation of salivary gland determination|positive regulation of salivary gland determination|activation of salivary gland determination|stimulation of salivary gland determination|up regulation of salivary gland determination biological_process owl:Class GO:0061353 biolink:NamedThing BMP signaling pathway involved in Malpighian tubule cell chemotaxis A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the directed movement of a Malpighian tubule cell toward a stimulus, thereby contributing to the shaping of the tubule. tmpzr1t_l9r_go_relaxed.owl bone morphogenic protein receptor signalling pathway involved in Malpighian tubule cell chemotaxis dph 2010-10-01T12:01:00Z biological_process owl:Class GO:0061352 biolink:NamedThing cell chemotaxis involved in Malpighian tubule morphogenesis The directed movement of the outgrowing Malpighian tubule guided by specific chemical cues/signals. Movement may be towards a guidance cue (positive chemotaxis) or away from it (negative chemotaxis). Guidance contributes to the final positioning of the tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T11:57:28Z biological_process owl:Class GO:0035322 biolink:NamedThing mesenchymal cell migration involved in limb bud formation The orderly movement of a mesenchymal cell from one site to another that will contribute to the formation of a limb bud. tmpzr1t_l9r_go_relaxed.owl bf 2010-02-24T02:05:14Z biological_process owl:Class GO:0007263 biolink:NamedThing nitric oxide mediated signal transduction Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms. tmpzr1t_l9r_go_relaxed.owl nitric oxide signaling|NO mediated signal transduction|nitric oxide-mediated signal transduction|NO-mediated signal transduction biological_process owl:Class GO:0034985 biolink:NamedThing Ecsit-NDUFAF1 complex Any large protein complex that contains Ecsit and NDUFAF1, is located in the mitochondrion, and is involved in the assembly of complex I of the oxidative phosphorylation system. In mammalian cells, three complexes of approximately 500, 600, and 850 kDa containing the 45 kDa isoform of Ecsit and NDUFAF1 have been observed. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000822 biolink:NamedThing regulation of behavioral fear response Any process that modulates the frequency, rate or extent of behavioral fear response. tmpzr1t_l9r_go_relaxed.owl regulation of behavioural fear response rl 2011-07-14T04:50:47Z biological_process owl:Class GO:1990260 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter by transcription factor localization involved in response to DNA damage checkpoint signaling Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter using a mechanism that involves the localization of a transcription factor and initiated in response to the DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl al 2014-01-07T17:10:11Z biological_process owl:Class GO:0014009 biolink:NamedThing glial cell proliferation The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others. tmpzr1t_l9r_go_relaxed.owl glia proliferation biological_process owl:Class GO:0003984 biolink:NamedThing acetolactate synthase activity Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2. tmpzr1t_l9r_go_relaxed.owl alpha-acetohydroxyacid synthase activity|alpha-acetolactate synthetase activity|acetohydroxy acid synthetase activity|pyruvate:pyruvate acetaldehydetransferase (decarboxylating)|alpha-acetolactate synthase activity|alpha-acetohydroxy acid synthetase activity|acetohydroxyacid synthase activity|acetolactic synthetase activity|acetolactate pyruvate-lyase (carboxylating) activity RHEA:25249|MetaCyc:ACETOLACTSYN-RXN|EC:2.2.1.6 Note that this function was formerly EC:4.1.3.18. molecular_function owl:Class GO:0075317 biolink:NamedThing ascus development The process that leads to the development of ascus, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed. tmpzr1t_l9r_go_relaxed.owl Note that ascospores and asci are separate biological structures. The ascus is the structure that contain the ascospores, but the development of the ascus is a different process than the formation of the ascospores themselves; for instance, some mutations affect sporulation without affecting ascus development. For this reason, GO:0030437 ascospore formation and GO:0075317 ascus development are different terms and are not linked. biological_process owl:Class GO:0043844 biolink:NamedThing ADP-specific phosphofructokinase activity Catalysis of the reaction: ADP + D-fructose 6-phosphate = AMP + D-fructose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl ADP:D-fructose-6-phosphate 1-phosphotransferase activity|ADP-Pfk activity|ADP-6-phosphofructokinase activity|ADP-dependent phosphofructokinase activity EC:2.7.1.146|RHEA:20105 molecular_function owl:Class GO:0075523 biolink:NamedThing viral translational frameshifting A process which occurs during viral translation, which involves a translational recoding mechanism called programmed ribosomal frameshifting. This causes the ribosome to alter its reading of the mRNA to an a different open reading frame to produce alternate viral proteins. tmpzr1t_l9r_go_relaxed.owl ribosomal frameshifting involved in viral translation VZ:860 This term is intended to annotate gene products involved in the process of viral translational frameshifting, not viral proteins produced by this translation process. jl 2011-08-03T02:48:46Z biological_process owl:Class GO:0033550 biolink:NamedThing MAP kinase tyrosine phosphatase activity Catalysis of the reaction: MAP kinase tyrosine phosphate + H2O = MAP kinase tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl tyrosine-specific MAP kinase phosphatase activity molecular_function owl:Class GO:0051298 biolink:NamedThing centrosome duplication The replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. tmpzr1t_l9r_go_relaxed.owl centrosome replication biological_process owl:Class GO:0031447 biolink:NamedThing negative regulation of fast-twitch skeletal muscle fiber contraction Any process that stops, prevents, or reduces the frequency, rate or extent of fast-twitch skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl negative regulation of fast-twitch skeletal muscle contraction|down regulation of fast-twitch skeletal muscle contraction|down-regulation of fast-twitch skeletal muscle contraction|inhibition of fast-twitch skeletal muscle contraction|downregulation of fast-twitch skeletal muscle contraction biological_process owl:Class GO:0033008 biolink:NamedThing positive regulation of mast cell activation involved in immune response Any process that activates or increases the frequency, rate, or extent of mast cell activation as part of an immune response. tmpzr1t_l9r_go_relaxed.owl positive regulation of mast cell activation during immune response biological_process owl:Class GO:0003135 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in heart induction The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to heart induction. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in heart induction tb 2009-09-22T03:17:49Z biological_process owl:Class GO:0010058 biolink:NamedThing regulation of atrichoblast fate specification Any process that modulates atrichoblast fate specification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047146 biolink:NamedThing sterigmatocystin 7-O-methyltransferase activity Catalysis of the reaction: sterigmatocystin + S-adenosyl-L-methionine = 7-O-methylsterigmatocystin + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:sterigmatocystin 7-O-methyltransferase activity|O-methyltransferase II activity|sterigmatocystin methyltransferase activity|sterigmatocystin 8-O-methyltransferase activity|S-adenosyl-L-methionine:sterigmatocystin 8-O-methyltransferase activity RHEA:15561|EC:2.1.1.110|MetaCyc:2.1.1.110-RXN molecular_function owl:Class GO:0060764 biolink:NamedThing cell-cell signaling involved in mammary gland development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the mammary gland, from its initial state to the mature structure. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in mammary gland development dph 2009-07-06T09:24:53Z biological_process owl:Class GO:0002078 biolink:NamedThing membrane fusion involved in acrosome reaction The fusion of the plasma membrane of the sperm with the outer acrosomal membrane. tmpzr1t_l9r_go_relaxed.owl membrane fusion involved in the acrosomal reaction biological_process owl:Class GO:0001551 biolink:NamedThing ovarian follicle endowment Association of oocytes with supporting epithelial granulosa cells to form primordial follicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022013 biolink:NamedThing pallium cell proliferation in forebrain The multiplication or reproduction of pallium cells in the forebrain, resulting in the expansion of the cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090367 biolink:NamedThing negative regulation of mRNA modification Any process that decreases the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:04:45Z biological_process owl:Class GO:1904269 biolink:NamedThing cell leading edge cell cortex The cell cortex of the leading edge of a cell. tmpzr1t_l9r_go_relaxed.owl cell periphery of front of cell|peripheral cytoplasm of leading edge of cell|peripheral cytoplasm of cell leading edge|cell cortex of leading edge of cell|cell periphery of leading edge of cell|cell periphery of cell leading edge|peripheral cytoplasm of front of cell|cell cortex of cell leading edge|cell cortex of front of cell kmv 2015-05-28T19:16:03Z cellular_component owl:Class GO:0001560 biolink:NamedThing regulation of cell growth by extracellular stimulus Any process in which external signals modulate the frequency, rate or extent of cell growth, the irreversible increase in size of a cell over time. tmpzr1t_l9r_go_relaxed.owl regulation of growth by exogenous stimulus|interpretation of external signals that regulate cell growth|regulation of growth by exogenous signal|regulation of cell growth by sensing of exogenous stimulus|regulation of growth by external stimuli|regulation of growth by external stimulus|regulation of growth by external signal|regulation of cell growth by detection of exogenous stimulus|regulation of growth by exogenous stimuli biological_process owl:Class GO:0044131 biolink:NamedThing negative regulation of development of symbiont in host Any process in which the symbiont stops, prevents or reduces its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont in host ; GO:0033667'. See also 'negative regulation of growth of symbiont in host ; GO:0044130'. jl 2009-08-04T02:42:56Z biological_process owl:Class GO:0020018 biolink:NamedThing ciliary pocket membrane That part of the plasma membrane found in the ciliary pocket (also called flagellar pocket). tmpzr1t_l9r_go_relaxed.owl cilium pocket membrane|cilial pocket membrane|flagellar pocket membrane Note that cilia and eukaryotic flagella are deemed to be equivalent. In this case community usage is mostly 'flagellar', but the primary term name reflects the cilium parentage. cellular_component owl:Class GO:0020022 biolink:NamedThing acidocalcisome An electron-dense acidic membrane-bounded organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations. tmpzr1t_l9r_go_relaxed.owl metachromatic granule|polyphosphate vacuole|volutin granule cellular_component owl:Class GO:0043245 biolink:NamedThing extraorganismal space The environmental space outside of an organism; this may be a host organism in the case of parasitic and symbiotic organisms. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070660 biolink:NamedThing inner ear receptor cell differentiation involved in inner ear sensory epithelium regeneration Differentiation of new inner ear sensory hair cells to replace those lost or destroyed by injury. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:24:23Z biological_process owl:Class GO:0070659 biolink:NamedThing inner ear sensory epithelium regeneration The regrowth of lost or destroyed inner ear sensory epithelia. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:21:09Z biological_process owl:Class GO:0033120 biolink:NamedThing positive regulation of RNA splicing Any process that activates or increases the frequency, rate or extent of RNA splicing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071694 biolink:NamedThing maintenance of protein location in extracellular region Any process in which a protein is maintained in a specific location within the extracellular region and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T04:04:41Z biological_process owl:Class GO:0071692 biolink:NamedThing protein localization to extracellular region Any process in which a protein is transported from one specific location in the extracellular region to another, or maintained in a specific extracellular location. tmpzr1t_l9r_go_relaxed.owl protein localisation in extracellular region|protein localization in extracellular region mah 2010-02-25T04:00:13Z biological_process owl:Class GO:0033253 biolink:NamedThing regulation of penicillinase activity Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of a penicillin to yield a substituted beta-amino acid derivative. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033250 biolink:NamedThing penicillinase activity Catalysis of the reaction: a penicillin + H2O = a substituted beta-amino acid derivative of the penicillin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:BETA-LACTAMASE-RXN molecular_function owl:Class GO:0019779 biolink:NamedThing Atg8 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier APG8, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl APG8 activating enzyme activity|APG7 molecular_function owl:Class GO:1903220 biolink:NamedThing positive regulation of malate dehydrogenase (decarboxylating) (NADP+) activity Any process that activates or increases the frequency, rate or extent of malate dehydrogenase (decarboxylating) (NADP+) activity. tmpzr1t_l9r_go_relaxed.owl activation of malate dehydrogenase (NADP, decarboxylating)|activation of NADP-linked decarboxylating malic enzyme|up regulation of NADP-malic enzyme activity|positive regulation of NADP-specific malic enzyme|upregulation of L-malate:NADP oxidoreductase activity|up regulation of NADP-specific malate dehydrogenase activity|up regulation of malate dehydrogenase (NADP, decarboxylating)|upregulation of malate dehydrogenase (decarboxylating) (NADP+) activity|up-regulation of malate dehydrogenase (NADP, decarboxylating)|up-regulation of malate dehydrogenase (decarboxylating, NADP)|up-regulation of NADP-malic enzyme activity|activation of L-malate:NADP oxidoreductase activity|upregulation of malate dehydrogenase (decarboxylating, NADP)|up regulation of malate dehydrogenase (decarboxylating) (NADP+) activity|upregulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|activation of NADP-malic enzyme activity|up regulation of malate dehydrogenase (decarboxylating, NADP)|positive regulation of malate dehydrogenase (NADP, decarboxylating)|positive regulation of 'malic' enzyme|positive regulation of NADP-malic enzyme activity|positive regulation of malate dehydrogenase (decarboxylating, NADP)|up regulation of NADP-specific malic enzyme|up-regulation of NADP-specific malate dehydrogenase activity|upregulation of NADP-malic enzyme activity|up-regulation of NADP-specific malic enzyme|positive regulation of NADP-specific malate dehydrogenase activity|upregulation of 'malic' enzyme|up regulation of 'malic' enzyme|activation of malate dehydrogenase (decarboxylating, NADP)|up regulation of L-malate:NADP oxidoreductase activity|up regulation of NADP-linked decarboxylating malic enzyme|positive regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|activation of malate dehydrogenase (decarboxylating) (NADP+) activity|activation of NADP-specific malate dehydrogenase activity|up-regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|activation of 'malic' enzyme|upregulation of NADP-specific malic enzyme|upregulation of NADP-linked decarboxylating malic enzyme|up-regulation of NADP-linked decarboxylating malic enzyme|activation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|positive regulation of NADP-linked decarboxylating malic enzyme|upregulation of NADP-specific malate dehydrogenase activity|up-regulation of 'malic' enzyme|activation of NADP-specific malic enzyme|upregulation of malate dehydrogenase (NADP, decarboxylating)|up regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|positive regulation of L-malate:NADP oxidoreductase activity|up-regulation of malate dehydrogenase (decarboxylating) (NADP+) activity|up-regulation of L-malate:NADP oxidoreductase activity sart 2014-07-24T11:17:34Z biological_process owl:Class GO:0070753 biolink:NamedThing interleukin-35 production The appearance of interleukin-35 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-35 biosynthetic process|IL-35 production|interleukin-35 secretion mah 2009-06-23T01:25:11Z GO:0072626|GO:0070749 biological_process owl:Class GO:0061067 biolink:NamedThing negative regulation of dauer larval development Any process that decreases the rate, frequency, or extent of dauer larval development, the process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-11T01:10:23Z biological_process owl:Class GO:0010662 biolink:NamedThing regulation of striated muscle cell apoptotic process Any process that modulates the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death. tmpzr1t_l9r_go_relaxed.owl regulation of striated muscle cell apoptosis biological_process owl:Class GO:0002655 biolink:NamedThing regulation of tolerance induction to nonself antigen Any process that modulates the frequency, rate, or extent of tolerance induction to nonself antigen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007419 biolink:NamedThing ventral cord development The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021897 biolink:NamedThing forebrain astrocyte development The process aimed at the progression of an astrocyte that resides in the forebrain, from initial commitment of the cell to its fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097503 biolink:NamedThing sialylation The covalent attachment of sialic acid to a substrate molecule. tmpzr1t_l9r_go_relaxed.owl pr 2013-09-20T09:53:10Z biological_process owl:Class GO:0001648 biolink:NamedThing proteinase activated receptor activity A G protein-coupled peptide receptor activity that is initiated by cleavage of the N terminus of the receptor by a serine protease, resulting in the generation of a new tethered ligand that interacts with the receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003140 biolink:NamedThing determination of left/right asymmetry in lateral mesoderm The establishment of the lateral mesoderm with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T03:58:29Z biological_process owl:Class GO:2000103 biolink:NamedThing positive regulation of mammary stem cell proliferation Any process that activates or increases the frequency, rate or extent of mammary stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T06:10:36Z biological_process owl:Class GO:0055120 biolink:NamedThing striated muscle dense body A vinculin-containing myofibril attachment structure of striated muscle that connects sarcomeres to the extracellular matrix. In nematode body wall muscle, the dense body performs the dual role of Z-disk and costamere. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0014740 biolink:NamedThing negative regulation of muscle hyperplasia Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hyperplasia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014900 biolink:NamedThing muscle hyperplasia A muscle system process that results in an increase in cell number by cell division, often leading to an increase in the size of an organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030694 biolink:NamedThing bacterial-type flagellum basal body, rod The central portion of the bacterial-type flagellar basal body, which spans the periplasm and threads through the rings. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum basal body, rod|flagellar basal body, rod cellular_component owl:Class GO:1904341 biolink:NamedThing regulation of colon smooth muscle contraction Any process that modulates the frequency, rate or extent of colon smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-11T21:16:58Z biological_process owl:Class GO:0000727 biolink:NamedThing double-strand break repair via break-induced replication The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004479 biolink:NamedThing methionyl-tRNA formyltransferase activity Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA. tmpzr1t_l9r_go_relaxed.owl 10-formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase activity|methionyl-tRNA transformylase activity|methionyl-transfer RNA transformylase activity|conversion of mitochondrial met-tRNAf to fmet-tRNA|N(10)-formyltetrahydrofolic-methionyl-transfer ribonucleic transformylase activity|methionyl-tRNA Met formyltransferase activity|N10-formyltetrahydrofolic-methionyl-transfer ribonucleic transformylase activity|conversion of met-tRNAf to fmet-tRNA|mitochondrial N-terminal peptidyl-methionine N-formylation|methionyl-transfer ribonucleic transformylase activity|methionyl-transfer ribonucleate methyltransferase activity|methionyl ribonucleic formyltransferase activity|formylmethionyl-transfer ribonucleic synthetase activity|N-terminal peptidyl-methionine N-formylation EC:2.1.2.9|Reactome:R-HSA-5389841|MetaCyc:METHIONYL-TRNA-FORMYLTRANSFERASE-RXN|RHEA:24380 GO:0070128|GO:0001718 molecular_function owl:Class GO:0071951 biolink:NamedThing conversion of methionyl-tRNA to N-formyl-methionyl-tRNA The modification process that results in the conversion of methionine charged on a tRNA(fMet) to N-formyl-methionine-tRNA(fMet). tmpzr1t_l9r_go_relaxed.owl mah 2010-10-08T11:54:38Z biological_process owl:Class GO:0044250 biolink:NamedThing negative regulation of metabolic activity involved in hibernation The slowing of metabolic processes to very low levels in order to conserve energy as a part of hibernation. tmpzr1t_l9r_go_relaxed.owl inhibition of metabolic activity during hibernation|down-regulation of metabolic activity during hibernation|downregulation of metabolic activity during hibernation|negative regulation of metabolic activity during hibernation|down regulation of metabolic activity during hibernation biological_process owl:Class GO:0042750 biolink:NamedThing hibernation Any process in which an organism enters and maintains a period of dormancy in which to pass the winter. It is characterized by narcosis and by sharp reduction in body temperature and metabolic activity and by a depression of vital signs. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Hibernation biological_process owl:Class GO:0015228 biolink:NamedThing coenzyme A transmembrane transporter activity Enables the transfer of coenzyme A from one side of a membrane to the other. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl coenzyme A transporter activity molecular_function owl:Class GO:0021843 biolink:NamedThing substrate-independent telencephalic tangential interneuron migration The directional movement of tangentially migrating interneurons that are not guided by attaching to extracellular substrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061194 biolink:NamedThing taste bud morphogenesis The process in which the anatomical structures of the taste bud are generated and organized. The taste bud is a specialized area of the tongue that contains taste receptors. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T11:01:31Z biological_process owl:Class GO:0023030 biolink:NamedThing MHC class Ib protein binding, via antigen binding groove Binding to a major histocompatibility complex class Ib molecules via the antigen binding groove. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0023025 biolink:NamedThing MHC class Ib protein complex binding Binding to a class Ib major histocompatibility complex. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0003371 biolink:NamedThing establishment or maintenance of cytoskeleton polarity involved in ameboidal cell migration Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures that contribute to the cell polarity of a migrating ameboid cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:42:46Z biological_process owl:Class GO:0032585 biolink:NamedThing multivesicular body membrane The lipid bilayer surrounding a multivesicular body. tmpzr1t_l9r_go_relaxed.owl MVB membrane|multivesicular endosome membrane|MVE membrane cellular_component owl:Class GO:2001134 biolink:NamedThing methane biosynthetic process from carbon monoxide The chemical reactions and pathways resulting in the formation of a methane from a carbon monoxide. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T12:36:20Z biological_process owl:Class GO:0060084 biolink:NamedThing synaptic transmission involved in micturition The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body. tmpzr1t_l9r_go_relaxed.owl synaptic transmission involved in urination biological_process owl:Class GO:0048372 biolink:NamedThing lateral mesodermal cell fate commitment The process in which a cell becomes committed to become a lateral mesoderm cell. tmpzr1t_l9r_go_relaxed.owl lateral plate mesoderm cell fate commitment|lateral mesoderm cell fate commitment|lateral plate mesodermal cell fate commitment biological_process owl:Class GO:1904925 biolink:NamedThing positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization Any process that activates or increases the frequency, rate or extent of autophagy of the mitochondrion in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl up regulation of mitophagy in response to mitochondrial depolarization|upregulation of mitophagy in response to mitochondrial depolarization|up-regulation of mitophagy in response to mitochondrial depolarization|activation of mitophagy in response to mitochondrial depolarization pad 2016-01-26T11:24:05Z biological_process owl:Class GO:0044326 biolink:NamedThing dendritic spine neck Part of the dendritic spine that connects the dendritic shaft to the head of the dendritic spine. tmpzr1t_l9r_go_relaxed.owl pedicle|spine neck|neck NIF_Subcellular:sao1642908940 jl 2010-08-18T02:31:15Z cellular_component owl:Class GO:0036517 biolink:NamedThing chemoattraction of serotonergic neuron axon The process in which a serotonergic neuron growth cone is directed to a specific target site in response to an attractive chemical signal. tmpzr1t_l9r_go_relaxed.owl chemoattraction of 5-HT axon|chemoattraction of serotonergic axon bf 2015-12-17T11:26:03Z biological_process owl:Class GO:0061592 biolink:NamedThing phosphatidylserine exposure on osteoblast involved in bone mineralization A phospholipid scrambling process that results in the appearance of phosphatidylserine on the surface of osteoblasts, and contributes to bone mineralization. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-05T15:27:39Z biological_process owl:Class GO:0010756 biolink:NamedThing positive regulation of plasminogen activation Any process that increases the rate, frequency or extent of plasminogen activation. Plasminogen activation is the process in which plasminogen is processed to plasmin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110145 biolink:NamedThing magnetosome lumen The volume enclosed by the membrane of a magnetosome. tmpzr1t_l9r_go_relaxed.owl kmv 2019-05-30T17:42:14Z cellular_component owl:Class GO:0048369 biolink:NamedThing lateral mesoderm morphogenesis The process in which the anatomical structures of the lateral mesoderm are generated and organized. tmpzr1t_l9r_go_relaxed.owl lateral plate mesoderm morphogenesis biological_process owl:Class GO:1902464 biolink:NamedThing regulation of histone H3-K27 trimethylation Any process that modulates the frequency, rate or extent of histone H3-K27 trimethylation. tmpzr1t_l9r_go_relaxed.owl krc 2013-10-22T14:58:55Z biological_process owl:Class GO:0098532 biolink:NamedThing histone H3-K27 trimethylation The modification of histone H3 by addition of three methyl groups to lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-18T14:11:17Z biological_process owl:Class GO:0050916 biolink:NamedThing sensory perception of sweet taste The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl sweet taste perception biological_process owl:Class GO:0005011 biolink:NamedThing macrophage colony-stimulating factor receptor activity Combining with macrophage colony-stimulating factor (M-CSF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl macrophage colony stimulating factor receptor activity|CSF-1|M-CSF receptor activity|Fms molecular_function owl:Class GO:0031259 biolink:NamedThing uropod membrane The portion of the plasma membrane surrounding a uropod. tmpzr1t_l9r_go_relaxed.owl uropodium membrane cellular_component owl:Class GO:0198738 biolink:NamedThing cell-cell signaling by wnt Any process that mediates the transfer of information from one cell to another, medaited by a wnt family protein ligand. This process includes wnt signal transduction in the receiving cell, release of wnt ligand from a secreting cell as well as any processes that actively facilitate wnt transport and presentation to receptor on the recieving cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900504 biolink:NamedThing negative regulation of cellulosome assembly Any process that stops, prevents or reduces the frequency, rate or extent of cellulosome assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of cellulosome assembly|inhibition of cellulosome assembly|down-regulation of cellulosome assembly|downregulation of cellulosome assembly tt 2012-05-02T03:58:26Z biological_process owl:Class GO:0019684 biolink:NamedThing photosynthesis, light reaction The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. tmpzr1t_l9r_go_relaxed.owl photolysis Wikipedia:Photolysis#Photolysis_in_photosynthesis|MetaCyc:PWY-101 biological_process owl:Class GO:0099581 biolink:NamedThing ATPase coupled ion transmembrane transporter activity involved in regulation of postsynaptic membrane potential Any ATPase coupled ion transmembrane transporter activity, occurring in the postsynaptic membrane, that is involved in regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled ion transmembrane transporter activity involved in regulation of postsynaptic membrane potential|ATPase coupled ion transmembrane transporter activity involved in regulation of post-synaptic membrane potential molecular_function owl:Class GO:1904122 biolink:NamedThing positive regulation of fatty acid beta-oxidation by octopamine signaling pathway An octopamine signaling pathway that results in positive regulation of fatty acid beta-oxidation. tmpzr1t_l9r_go_relaxed.owl up regulation of fatty acid beta-oxidation by octopamine signaling pathway|stimulation of fatty acid beta-oxidation by octopamine signaling pathway|activation of fatty acid beta-oxidation by octopamine signaling pathway|up-regulation of fatty acid beta-oxidation by octopamine signaling pathway|upregulation of fatty acid beta-oxidation by octopamine signaling pathway kmv 2015-04-08T21:03:13Z biological_process owl:Class GO:0070757 biolink:NamedThing interleukin-35-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-35 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-35-mediated signaling pathway|interleukin-35-mediated signalling pathway mah 2009-06-23T01:55:02Z biological_process owl:Class GO:0034745 biolink:NamedThing APC-IQGAP1-Rac1 complex A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Rac1, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration. tmpzr1t_l9r_go_relaxed.owl Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0044741 biolink:NamedThing envenomation resulting in negative regulation of sensory perception of pain in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the inhibition of the sensory perception of pain in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in inhibition of sensory perception of pain in other organism jl 2012-11-07T14:02:14Z biological_process owl:Class GO:1903127 biolink:NamedThing positive regulation of centriole-centriole cohesion Any process that activates or increases the frequency, rate or extent of centriole-centriole cohesion. tmpzr1t_l9r_go_relaxed.owl up regulation of centriole-centriole cohesion|activation of centriole-centriole cohesion|upregulation of centriole-centriole cohesion|up-regulation of centriole-centriole cohesion als 2014-06-24T09:31:51Z biological_process owl:Class GO:0007441 biolink:NamedThing anterior midgut (ectodermal) morphogenesis The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072065 biolink:NamedThing long descending thin limb bend development The process whose specific outcome is the progression of the long descending thin limb bend over time, from its formation to the mature structure. The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:13:38Z biological_process owl:Class GO:0009866 biolink:NamedThing induced systemic resistance, ethylene mediated signaling pathway The series of molecular signals mediated by ethylene (ethene) involved in induced systemic resistance. tmpzr1t_l9r_go_relaxed.owl induced systemic resistance, ethylene mediated signalling pathway|ethene mediated signaling pathway (induced systemic resistance)|induced systemic resistance, ethene mediated signalling pathway|induced systemic resistance, ethene mediated signaling pathway|ethylene mediated signaling pathway (induced systemic resistance) biological_process owl:Class GO:0048460 biolink:NamedThing flower formation The process that gives rise to the flower. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048410 biological_process owl:Class GO:0071516 biolink:NamedThing establishment of imprinting at mating-type locus The initial formation of a stable single-strand DNA lesion that triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication. tmpzr1t_l9r_go_relaxed.owl mating type determination, establishment of imprinting mah 2010-01-06T01:16:27Z biological_process owl:Class GO:0003026 biolink:NamedThing regulation of systemic arterial blood pressure by aortic arch baroreceptor feedback The process that modulates blood pressure by sensing the amount of stretch occurring in the aorta and responding to the input via central nervous system control. tmpzr1t_l9r_go_relaxed.owl aortic arch baroreceptor control of systemic arterial blood pressure biological_process owl:Class GO:0004969 biolink:NamedThing histamine receptor activity Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051381 biolink:NamedThing histamine binding Binding to histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044022 biolink:NamedThing histone kinase activity (H3-S28 specific) Catalysis of the transfer of a phosphate group to the serine-28 residue of the N-terminal tail of histone H3. tmpzr1t_l9r_go_relaxed.owl histone serine kinase activity (H3-S28 specific)|histone-serine kinase activity (H3-S28 specific) molecular_function owl:Class GO:0043988 biolink:NamedThing histone H3-S28 phosphorylation The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3S28 phosphorylation|histone H3 phosphorylation at S28 biological_process owl:Class GO:0071809 biolink:NamedThing regulation of fever generation by regulation of prostaglandin biosynthesis Any process that modulates the rate or extent of fever generation via regulation of the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-03T05:07:17Z biological_process owl:Class GO:0051356 biolink:NamedThing visual perception involved in equilibrioception The series of events during equilibrioception required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual input plays an important role in the ability of an organism to perceive its orientation with respect to gravity. tmpzr1t_l9r_go_relaxed.owl visual perception during equilibrioception|perception of orientation with respect to gravity by visual perception|equilibrioception by visual perception biological_process owl:Class GO:0003295 biolink:NamedThing cell proliferation involved in atrial ventricular junction remodeling The multiplication or reproduction of cells that contributes to the reorganization of tissue resulting in the maturation of the atrial ventricular junction. tmpzr1t_l9r_go_relaxed.owl cell proliferation involved in atrioventricular junction remodeling|cell proliferation involved in atrio-ventricular junction remodeling dph 2009-10-22T08:38:30Z biological_process owl:Class GO:0046836 biolink:NamedThing glycolipid transport The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061682 biolink:NamedThing seminal vesicle morphogenesis The process in which the anatomical structures of a seminal vesicle are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2015-03-04T13:33:49Z biological_process owl:Class GO:0097546 biolink:NamedThing ciliary base Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area. tmpzr1t_l9r_go_relaxed.owl cilial base|flagellar base|cilium base|flagellum base Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent. pr 2013-12-17T14:16:04Z cellular_component owl:Class GO:0001794 biolink:NamedThing type IIa hypersensitivity An inflammatory response resulting in cell death mediated by activation of the classical complement pathway or induction of effector cell phagocytosis or cytolysis mechanisms via complement or Fc receptors following the binding of antibodies to cell surface antigens on a target cell. tmpzr1t_l9r_go_relaxed.owl Note that some type IIb hypersensitivity responses (GO:0001795) are referred to simply as type II hypersensitivity in the earlier literature, but are mechanistically distinct from type IIa hypersensitivity. biological_process owl:Class GO:0043610 biolink:NamedThing regulation of carbohydrate utilization Any process that modulates the frequency, rate or extent of carbohydrate utilization. tmpzr1t_l9r_go_relaxed.owl regulation of sugar utilization biological_process owl:Class GO:1990658 biolink:NamedThing transnitrosylase complex A transferase complex which is capable of transferring nitrogenous groups from one component to another. tmpzr1t_l9r_go_relaxed.owl transferase complex, transferring nitrogenous groups An example of this is S100A9 in human (UniProt symbol P06702) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T11:17:17Z cellular_component owl:Class GO:0009562 biolink:NamedThing embryo sac nuclear migration The directed movement of an embryo sac nucleus to the pole or center of the cell. tmpzr1t_l9r_go_relaxed.owl embryo sac nucleus migration|megagametophyte nucleus migration|megagametophyte nuclear migration|female gametophyte nucleus migration|female gametophyte nuclear migration biological_process owl:Class GO:0031149 biolink:NamedThing sorocarp stalk cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sorocarp stalk cell, any of the cellulose-covered cells that form the stalk of a sorocarp. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl stalk cell differentiation biological_process owl:Class GO:0043131 biolink:NamedThing erythrocyte enucleation The process in which nucleated precursor cells lose their nucleus during erythrocyte maturation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071973 biolink:NamedThing bacterial-type flagellum-dependent cell motility Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellar cell motility|bacterial-type flagellar cell motility mah 2010-10-21T12:00:53Z biological_process owl:Class GO:1900399 biolink:NamedThing positive regulation of pyrimidine nucleotide biosynthetic process Any process that activates or increases the frequency, rate or extent of pyrimidine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of pyrimidine nucleotide synthesis|up regulation of pyrimidine nucleotide biosynthetic process|positive regulation of pyrimidine nucleotide biosynthesis|up-regulation of pyrimidine nucleotide biosynthetic process|upregulation of pyrimidine nucleotide biosynthetic process|activation of pyrimidine nucleotide synthesis|upregulation of pyrimidine nucleotide biosynthesis|activation of pyrimidine nucleotide formation|positive regulation of pyrimidine nucleotide anabolism|up-regulation of pyrimidine nucleotide anabolism|up-regulation of pyrimidine nucleotide synthesis|up-regulation of pyrimidine nucleotide biosynthesis|up regulation of pyrimidine nucleotide formation|up-regulation of pyrimidine nucleotide formation|activation of pyrimidine nucleotide biosynthesis|upregulation of pyrimidine nucleotide anabolism|activation of pyrimidine nucleotide anabolism|up regulation of pyrimidine nucleotide anabolism|up regulation of pyrimidine nucleotide synthesis|positive regulation of pyrimidine nucleotide synthesis|upregulation of pyrimidine nucleotide formation|activation of pyrimidine nucleotide biosynthetic process|up regulation of pyrimidine nucleotide biosynthesis|positive regulation of pyrimidine nucleotide formation jh 2012-04-19T01:05:50Z biological_process owl:Class GO:0070365 biolink:NamedThing hepatocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a hepatocyte. A hepatocyte is specialized epithelial cell that is organized into interconnected plates called lobules, and is the main structural component of the liver. tmpzr1t_l9r_go_relaxed.owl liver cell differentiation biological_process owl:Class GO:0034106 biolink:NamedThing regulation of erythrocyte clearance Any process that modulates the frequency, rate, or extent of erythrocyte clearance. tmpzr1t_l9r_go_relaxed.owl regulation of neocytolysis|regulation of red blood cell clearance|regulation of RBC clearance biological_process owl:Class GO:0048930 biolink:NamedThing glial cell migration in posterior lateral line nerve The movement of a glial cell along the axons in the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062224 biolink:NamedThing positive regulation of somatic muscle development Any process that increases the rate, frequency or extent of somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-13T19:03:38Z biological_process owl:Class GO:0035993 biolink:NamedThing deltoid tuberosity development The process whose specific outcome is the progression of the deltoid tuberosity over time, from its formation to the mature structure. The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. The deltoid tuberosity develops through endochondral ossification in a two-phase process; an initiating tendon-dependent phase, and a muscle-dependent growth phase. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-30T01:46:53Z biological_process owl:Class GO:0032637 biolink:NamedThing interleukin-8 production The appearance of interleukin-8 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-8 biosynthetic process|IL-8 production|interleukin-8 secretion GO:0072606|GO:0042228 biological_process owl:Class GO:0072143 biolink:NamedThing mesangial cell development The process whose specific outcome is the progression of a mesangial cell in the kidney over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T01:44:28Z biological_process owl:Class GO:0021671 biolink:NamedThing rhombomere 7 morphogenesis The process in which the anatomical structure of rhombomere 7 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021573 biolink:NamedThing rhombomere 7 development The process whose specific outcome is the progression of rhombomere 7 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001757 biolink:NamedThing somite specification The process in which individual somites establish identity during embryogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004634 biolink:NamedThing phosphopyruvate hydratase activity Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O. tmpzr1t_l9r_go_relaxed.owl enolase activity|2-phospho-D-glycerate hydro-lyase activity|2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)|2-phosphoglycerate enolase activity|phosphoenolpyruvate hydratase activity|2-phosphoglyceric dehydratase activity|14-3-2-protein|gamma-enolase activity|2-phospho-D-glycerate-hydrolase activity|2-phosphoglycerate dehydratase activity|nervous-system specific enolase RHEA:10164|EC:4.2.1.11|Reactome:R-HSA-70494|Reactome:R-HSA-71660|MetaCyc:2PGADEHYDRAT-RXN molecular_function owl:Class GO:1990896 biolink:NamedThing protein localization to cell cortex of cell tip A process in which a protein is transported to, or maintained in, the cell cortex of the cell tip. tmpzr1t_l9r_go_relaxed.owl vw 2015-11-05T08:41:49Z biological_process owl:Class GO:0044473 biolink:NamedThing envenomation resulting in negative regulation of calcium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction of the activity of a calcium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:19:46Z biological_process owl:Class GO:1904032 biolink:NamedThing regulation of t-SNARE clustering Any process that modulates the frequency, rate or extent of t-SNARE clustering. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-13T21:21:38Z biological_process owl:Class GO:0072030 biolink:NamedThing short nephron development The process whose specific outcome is the progression of a short nephron over time, from its formation to the mature structure. Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:49:32Z biological_process owl:Class GO:0080157 biolink:NamedThing regulation of plant-type cell wall organization or biogenesis Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving plant-type cell wall organization or biogenesis. Plant-type cell wall organization or biogenesis is a process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. tmpzr1t_l9r_go_relaxed.owl regulation of plant-type cell wall organisation or biogenesis dhl 2010-09-01T04:02:37Z biological_process owl:Class GO:0043674 biolink:NamedThing columella A rod-like element of the sexine and ectexine, supporting either the tectum (the layer of sexine which forms a roof over the columella), or supporting a caput (an architectural element on top of a columella). tmpzr1t_l9r_go_relaxed.owl sexine 1 cellular_component owl:Class GO:0039640 biolink:NamedThing viral release by cytolysis via suppression of host peptidoglycan biosynthetic process The killing by a virus of host cell by cytolysis, caused by a virus stopping, preventing, or reducing peptidoglycan biosynthesis in the host organism. Peptidoglycans are any of a class of glycoconjugates found in bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl viral exit by cytolysis via suppression of host peptidoglycan biosynthetic process|cytolysis by virus via suppression of host peptidoglycan biosynthetic process https://github.com/geneontology/go-ontology/issues/18852 bf 2012-08-17T10:54:55Z biological_process owl:Class GO:0039635 biolink:NamedThing suppression by virus of host peptidoglycan biosynthetic process Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of peptidoglycan biosynthesis in the host organism. Peptidoglycans are any of a class of glycoconjugates found in bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl viral inhibition of host peptidoglycan biosynthesis bf 2012-08-10T14:58:12Z biological_process owl:Class GO:0042450 biolink:NamedThing arginine biosynthetic process via ornithine The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine. tmpzr1t_l9r_go_relaxed.owl arginine anabolism via ornithine|arginine formation via ornithine|arginine synthesis via ornithine biological_process owl:Class GO:0060116 biolink:NamedThing vestibular receptor cell morphogenesis Any process that alters the size or shape of a vestibular receptor cell. tmpzr1t_l9r_go_relaxed.owl vestibular hair cell morphogenesis biological_process owl:Class GO:0060118 biolink:NamedThing vestibular receptor cell development The process whose specific outcome is the progression of a vestibular receptor cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl vestibular hair cell development biological_process owl:Class GO:0045035 biolink:NamedThing sensory organ precursor cell division The series of four asymmetric divisions undergone by the sensory organ precursor cells to generate cells that have distinct cell fates. For example, in the external sensory organ, the precursor cells give rise to one multidendritic neuron and four additional cells (the socket, shaft, sheath cells and the external sense neuron). tmpzr1t_l9r_go_relaxed.owl sense organ precursor cell division biological_process owl:Class GO:0039573 biolink:NamedThing suppression by virus of host complement activation Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of complement activation. The activation of complement involves the sequential proteolysis of proteins to generate enzymes with catalytic activities. The biological functions of the complement include opsonization, inflammation, lysis of immune complexes, or enhancement of the humoral immune response. For example, the virus complement control protein (VCP) of vaccinia virus, and the complement control protein of herpesvirus inhibit C3 convertase. tmpzr1t_l9r_go_relaxed.owl inhibition of host complement cascade by virus|inhibition of host complement factors by virus|inhibition of host complement activation by virus VZ:811 bf biological_process owl:Class GO:0038175 biolink:NamedThing negative regulation of SREBP signaling pathway in response to increased oxygen levels Any process that stops, prevents or reduces the frequency, rate or extent of the SREBP signaling pathway in response to an increase in oxygen levels. tmpzr1t_l9r_go_relaxed.owl negative regulation of SREBP-mediated signaling pathway in presence of oxygen|negative regulation of SREBP-mediated signaling pathway in response to increased oxygen levels bf 2012-07-20T01:28:59Z biological_process owl:Class GO:0036295 biolink:NamedThing cellular response to increased oxygen levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen. tmpzr1t_l9r_go_relaxed.owl cellular response to raised oxygen levels This term should be used when an increase in oxygen levels is not considered a stress response. For a hyperoxic stress response, consider instead 'cellular response to hyperoxia ; GO:0071455'. bf 2012-07-20T01:09:39Z biological_process owl:Class GO:0016240 biolink:NamedThing autophagosome membrane docking The initial attachment of an autophagosome membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole docking biological_process owl:Class GO:0030222 biolink:NamedThing eosinophil differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specializes features of an eosinophil. tmpzr1t_l9r_go_relaxed.owl eosinophil cell development|eosinophil development|eosinophil cell differentiation GO:0035856 biological_process owl:Class GO:0140599 biolink:NamedThing mitotic nuclear bridge midzone membrane domain A nuclear membrane part at the midzone of the mitotic nuclear bridge. The midzone forms a bulge that is enriched in nuclear pores that lack baskets. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20526 pg 2021-02-10T13:39:43Z cellular_component owl:Class GO:0140512 biolink:NamedThing mitotic nuclear bridge midzone The central region of a mitotic nuclear bridge, distal to the main portions of the daughter nuclei. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19946|https://github.com/geneontology/go-ontology/issues/20526 pg 2020-09-07T10:08:02Z cellular_component owl:Class GO:0036507 biolink:NamedThing protein demannosylation The removal of one or more mannose residues from a mannosylated protein. tmpzr1t_l9r_go_relaxed.owl protein de-mannosylation Consider also annotating to the term 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T13:57:01Z biological_process owl:Class GO:0020006 biolink:NamedThing symbiont-containing vacuolar membrane network Tubular network of extensions from the symbiont-containing vacuole membrane that protrude into the host cytoplasm. tmpzr1t_l9r_go_relaxed.owl tubulovesicular network|parasitophorous vacuolar membrane network|symbiont-containing vacuole membrane network cellular_component owl:Class GO:0002267 biolink:NamedThing follicular dendritic cell activation involved in immune response A change in the morphology or behavior of a follicular dendritic cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl follicular dendritic cell activation during immune response biological_process owl:Class GO:0060649 biolink:NamedThing mammary gland bud elongation The process in which the mammary gland bud grows along its axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:50:39Z biological_process owl:Class GO:0044737 biolink:NamedThing modulation of acid-sensing ion channel in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of an acid-sensing ion channel (ASIC) in another organism. tmpzr1t_l9r_go_relaxed.owl regulation of ASIC channel in other organism|regulation of acid-sensing ion channel in other organism jl 2012-11-06T16:51:24Z biological_process owl:Class GO:0030805 biolink:NamedThing regulation of cyclic nucleotide catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of cyclic nucleotide catabolism|regulation of cyclic nucleotide breakdown|regulation of cyclic nucleotide degradation biological_process owl:Class GO:0048707 biolink:NamedThing instar larval or pupal morphogenesis The process, occurring during instar larval or pupal development, by which anatomical structures are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001555 biolink:NamedThing oocyte growth The developmental growth process in which an oocyte irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021750 biolink:NamedThing vestibular nucleus development The process whose specific outcome is the progression of the vestibular nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021548 biolink:NamedThing pons development The process whose specific outcome is the progression of the pons over time, from its formation to the mature structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061277 biolink:NamedThing mesonephric nephron tubule formation The developmental process pertaining to the initial formation of a mesonephric nephron tubule from unspecified parts. A mesonephric nephron tubule is an epithelial tube that is part of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:16:21Z biological_process owl:Class GO:0140536 biolink:NamedThing nuclear receptor corepressor activity A transcription corepressor activity that represses or decreases the transcription of specific gene sets via binding to a DNA-bound nuclear receptor, either on its own or as part of a complex. Nuclear receptor corepressors often act by altering chromatin structure and modifications. For example, one class of transcription nuclear receptor corepressors modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. tmpzr1t_l9r_go_relaxed.owl nuclear corepressor activity https://github.com/geneontology/go-ontology/issues/20262|https://github.com/geneontology/go-ontology/issues/20464 For usage guidance, see comment in GO:0003712 ; transcription coregulator activity. pg 2020-11-03T13:02:08Z molecular_function owl:Class GO:0006811 biolink:NamedThing ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035077 biolink:NamedThing ecdysone-mediated polytene chromosome puffing The decondensing (loosening) and swelling of the chromosomal sites of hormone-responsive genes on polytene chromosomes in response to increased production of the steroid hormone 20-hydroxyecdysone (ecdysone) in Drosophila larvae approaching pupation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019531 biolink:NamedThing oxalate transmembrane transporter activity Enables the transfer of oxalate from one side of a membrane to the other. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals. tmpzr1t_l9r_go_relaxed.owl oxalic acid transporter activity molecular_function owl:Class GO:0021542 biolink:NamedThing dentate gyrus development The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010318 biolink:NamedThing pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex Refers to the beta subunit of the heterodimeric complex that possesses pyrophosphate-dependent phosphofructokinase activity. tmpzr1t_l9r_go_relaxed.owl PFK complex, beta-subunit cellular_component owl:Class GO:0045247 biolink:NamedThing cytosolic electron transfer flavoprotein complex A protein complex located in the cytosol containing flavin adenine dinucleotide (FAD) that, together with an acyl-CoA dehydrogenase, forms a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021994 biolink:NamedThing progression of neural tube closure The process in which the neural folds are fused extending from the initial closure points. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015168 biolink:NamedThing glycerol transmembrane transporter activity Enables the transfer of glycerol from one side of a membrane to the other. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007434 biolink:NamedThing adult salivary gland boundary specification Determination in an adult organism of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland. tmpzr1t_l9r_go_relaxed.owl larval salivary gland determination biological_process owl:Class GO:0061605 biolink:NamedThing molybdopterin-synthase adenylyltransferase activity Catalysis of the reaction: ATP [molybdopterin-synthase sulfur-carrier protein]-Gly-Gly = diphosphate [molybdopterin-synthase sulfur-carrier protein]-Gly-Gly-AMP. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.80|RHEA:43616 dph 2014-02-11T12:01:32Z molecular_function owl:Class GO:0016342 biolink:NamedThing catenin complex Complex of peripheral cytoplasmic proteins (alpha-, beta- and gamma-catenin) that interact with the cytoplasmic region of uvomorulin/E-cadherin to connect it to the actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048861 biolink:NamedThing leukemia inhibitory factor signaling pathway Any series of molecular signals initiated by the binding of leukemia inhibitory factor to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl leukemia inhibitory factor signalling pathway biological_process owl:Class GO:0035619 biolink:NamedThing root hair tip The tip portion of an outgrowth of a root epidermal cell. tmpzr1t_l9r_go_relaxed.owl root hair cell tip bf 2010-12-03T01:43:55Z cellular_component owl:Class GO:0035618 biolink:NamedThing root hair A long, thin projection from a root epidermal cell that contains F-actin and tubulin, and a cell wall. tmpzr1t_l9r_go_relaxed.owl This term is a child of 'cell projection' and not 'cell hair' to distinguish it from animal cell hairs, which are morphologically distinct. bf 2010-12-03T01:42:40Z cellular_component owl:Class GO:0099519 biolink:NamedThing dense core granule cytoskeletal transport The directed movement of dense core granules along cytoskeletal fibers, such as microtubules or actin filaments. tmpzr1t_l9r_go_relaxed.owl dense core vesicle cytoskeletal trafficking biological_process owl:Class GO:1904787 biolink:NamedThing positive regulation of asymmetric protein localization involved in cell fate determination Any process that activates or increases the frequency, rate or extent of asymmetric protein localization involved in cell fate determination. tmpzr1t_l9r_go_relaxed.owl up-regulation of asymmetric protein localization involved in cell fate commitment|activation of cell fate commitment, asymmetric protein localization|up regulation of asymmetric protein localization involved in cell fate commitment|upregulation of asymmetric protein localisation involved in cell fate determination|up regulation of cell fate commitment, asymmetric protein localization|activation of asymmetric protein localization resulting in cell fate commitment|positive regulation of asymmetric protein localization resulting in cell fate commitment|activation of asymmetric protein localization involved in cell fate determination|positive regulation of asymmetric protein localisation involved in cell fate determination|up regulation of asymmetric protein localisation involved in cell fate determination|upregulation of asymmetric protein localization involved in cell fate commitment|activation of asymmetric protein localisation involved in cell fate determination|positive regulation of cell fate commitment, asymmetric protein localization|up regulation of asymmetric protein localization resulting in cell fate commitment|up-regulation of asymmetric protein localization involved in cell fate determination|activation of asymmetric protein localization involved in cell fate commitment|up regulation of asymmetric protein localization involved in cell fate determination|up-regulation of asymmetric protein localization resulting in cell fate commitment|up-regulation of asymmetric protein localisation involved in cell fate determination|up-regulation of cell fate commitment, asymmetric protein localization|upregulation of asymmetric protein localization involved in cell fate determination|upregulation of asymmetric protein localization resulting in cell fate commitment|positive regulation of asymmetric protein localization involved in cell fate commitment|upregulation of cell fate commitment, asymmetric protein localization wrm-1 in C. Elegans (Q10953) in PMID:17476329 (IMP) es 2015-11-03T12:11:19Z biological_process owl:Class GO:0045167 biolink:NamedThing asymmetric protein localization involved in cell fate determination Any process in which a protein is transported to, or maintained in, a specific asymmetric distribution, resulting in the formation of daughter cells of different types. tmpzr1t_l9r_go_relaxed.owl asymmetric protein localization resulting in cell fate commitment|cell fate commitment, asymmetric protein localization|asymmetric protein localization involved in cell fate commitment|asymmetric protein localisation involved in cell fate determination biological_process owl:Class GO:1903896 biolink:NamedThing positive regulation of IRE1-mediated unfolded protein response Any process that activates or increases the frequency, rate or extent of the IRE1-mediated unfolded protein response. tmpzr1t_l9r_go_relaxed.owl activation of IRE1-mediated unfolded protein response|upregulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|upregulation of IRE1 branch of UPR|activation of UPR signaling by IRE1 stress sensor|upregulation of IRE1 signaling in response to endoplasmic reticulum stress|positive regulation of IRE1 signaling in response to endoplasmic reticulum stress|positive regulation of IRE1p unfolded protein response|upregulation of IRE1alpha unfolded protein response|positive regulation of IRE1 branch of UPR|upregulation of IRE1-mediated unfolded protein response|activation of inositol-requiring transmembrane kinase/endonuclease signal transduction|up regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|activation of IRE1p unfolded protein response|up regulation of IRE1alpha unfolded protein response|up regulation of IRE1-mediated unfolded protein response|up-regulation of UPR signaling by IRE1 stress sensor|up-regulation of IRE1p unfolded protein response|upregulation of IRE1p unfolded protein response|up regulation of IRE1 branch of UPR|up-regulation of IRE1alpha unfolded protein response|upregulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|activation of IRE1 branch of UPR|positive regulation of UPR signaling by IRE1 stress sensor|up regulation of UPR signaling by IRE1 stress sensor|positive regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|activation of endoplasmic reticulum unfolded protein response; IRE1 signaling|positive regulation of ERN1-mediated unfolded protein response|activation of IRE1 signaling in response to endoplasmic reticulum stress|upregulation of UPR signaling by IRE1 stress sensor|up regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|up-regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|positive regulation of IRE1alpha unfolded protein response|up-regulation of IRE1-mediated unfolded protein response|up-regulation of IRE1 branch of UPR|up regulation of IRE1p unfolded protein response|up-regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling|positive regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction|up regulation of IRE1 signaling in response to endoplasmic reticulum stress|up-regulation of IRE1 signaling in response to endoplasmic reticulum stress|activation of IRE1alpha unfolded protein response bf 2015-02-09T10:18:04Z biological_process owl:Class GO:0002291 biolink:NamedThing T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell The change in morphology and behavior of a mature or immature T cell resulting from exposure to an antigen for which its T cell receptor is specific bound to an MHC molecule on an antigen presenting cell, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell|T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell biological_process owl:Class GO:0003309 biolink:NamedThing type B pancreatic cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features of a type B pancreatic cell. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic beta cell differentiation|pancreatic B cell differentiation dph 2009-10-26T09:27:23Z biological_process owl:Class GO:0050917 biolink:NamedThing sensory perception of umami taste The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl umami taste perception biological_process owl:Class GO:0042471 biolink:NamedThing ear morphogenesis The process in which the anatomical structures of the ear are generated and organized. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals. tmpzr1t_l9r_go_relaxed.owl hearing organ morphogenesis biological_process owl:Class GO:0033526 biolink:NamedThing tetrapyrrole biosynthetic process from glutamate The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next, from other compounds, including L-glutamate. tmpzr1t_l9r_go_relaxed.owl tetrapyrrole anabolism from glutamate|tetrapyrrole synthesis from glutamate|tetrapyrrole biosynthesis from glutamate|tetrapyrrole formation from glutamate MetaCyc:PWY-5188 biological_process owl:Class GO:0008837 biolink:NamedThing diaminopimelate epimerase activity Catalysis of the reaction: LL-2,6-diaminopimelate = meso-2,6-diaminopimelate. tmpzr1t_l9r_go_relaxed.owl LL-2,6-diaminoheptanedioate 2-epimerase activity KEGG_REACTION:R02735|EC:5.1.1.7|RHEA:15393|MetaCyc:DIAMINOPIMEPIM-RXN molecular_function owl:Class GO:0062167 biolink:NamedThing complement component C1q complex A protein-containing complex composed of six subunits of each of the three homologous polypeptide chains C1QA, C1QB, and C1QB. It is a subunit of the complement C1 complex. In addition to complement activation, C1q appears to have roles in homeostasis and cellular development, superoxide (O2-) production by neutrophils, blood coagulation and neurological synapse pruning. tmpzr1t_l9r_go_relaxed.owl C1q|Complement 1q dph 2019-11-12T13:21:57Z cellular_component owl:Class GO:0072294 biolink:NamedThing specification of metanephric connecting tubule identity The process in which the connecting tubule of the metanephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T04:00:31Z biological_process owl:Class GO:0072286 biolink:NamedThing metanephric connecting tubule development The process whose specific outcome is the progression of the metanephric connecting tubule over time, from its formation to the mature structure. The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephric connecting duct development mah 2010-04-09T03:30:09Z biological_process owl:Class GO:0044458 biolink:NamedThing motile cilium assembly The aggregation, arrangement and bonding together of a set of components to form a motile cilium. tmpzr1t_l9r_go_relaxed.owl nodal cilium assembly|motile primary cilia formation|nodal cilium formation|motile primary cilium assembly|motile primary cilia assembly|motile primary cilium formation krc 2015-02-06T17:23:23Z GO:1903887 biological_process owl:Class GO:0016360 biolink:NamedThing sensory organ precursor cell fate determination The process in which a cell becomes capable of differentiating autonomously into a sensory organ precursor cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl sense organ precursor cell fate determination biological_process owl:Class GO:0017050 biolink:NamedThing D-erythro-sphingosine kinase activity Catalysis of the reaction: sphingosine + ATP = sphingosine 1-phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl sphingosine kinase activity Reactome:R-HSA-428273|MetaCyc:RXN3DJ-11417|Reactome:R-HSA-9695949|Reactome:R-HSA-5218845|Reactome:R-HSA-9625814|RHEA:35847 molecular_function owl:Class GO:0030433 biolink:NamedThing ubiquitin-dependent ERAD pathway The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. tmpzr1t_l9r_go_relaxed.owl ER-associated ubiquitin-dependent protein degradation|ER-associated ubiquitin-dependent protein catabolic process|ERAD|ER-associated ubiquitin-dependent protein catabolism|endoplasmic reticulum-associated ubiquitin-dependent protein catabolic process|endoplasmic reticulum-associated ubiqutin-dependent protein catabolism|ubiquitin-dependent proteasomal protein catabolism of ER proteins|ER-associated ubiquitin-dependent protein breakdown See also the biological process terms 'ERAD pathway ; GO:0036503', 'unfolded protein response ; GO:0030968' and 'retrograde protein transport, ER to cytosol ; GO:0030970'. biological_process owl:Class GO:0030993 biolink:NamedThing axonemal heterotrimeric kinesin-II complex A kinesin complex found in eukaryotic axonemes that contains two distinct plus end-directed kinesin motor proteins and at least one accessory subunit, and that functions in the anterograde transport of molecules (cargo) from the basal body to the distal tip of the axoneme. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097433 biolink:NamedThing dense body An electron dense body which may contain granules. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao730872736 pr 2012-11-22T15:34:04Z cellular_component owl:Class GO:0032172 biolink:NamedThing germ tube septin ring A tight ring-shaped structure that forms in the division plane within the germ tube of filamentous fungi at sites where a septum will form; composed of septins as well as septin-associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003387 biolink:NamedThing neuron differentiation involved in amphid sensory organ development The process in which a relatively unspecialized cell acquires specialized features of a neuron that contributes to the progression of the amphid sensory gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:15:00Z biological_process owl:Class GO:0003386 biolink:NamedThing amphid sensory organ development The progression of the amphid sensory organ over time, from its formation to the mature structure. Amphid sensory organs are the sensory organs of nematodes. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:09:20Z biological_process owl:Class GO:0010689 biolink:NamedThing negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to chemical stimulus Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098529 biolink:NamedThing neuromuscular junction development, skeletal muscle fiber A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction that targets a skeletal muscle fiber. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048741 biolink:NamedThing skeletal muscle fiber development The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast. tmpzr1t_l9r_go_relaxed.owl skeletal muscle fibre development|skeletal myofiber development|skeletal myofibre development biological_process owl:Class GO:0038004 biolink:NamedThing epidermal growth factor receptor ligand maturation Any process leading to the attainment of the full functional capacity of a ligand for an epidermal growth factor receptor. The ligand is functional when it can bind to and activate an epidermal growth factor receptor. tmpzr1t_l9r_go_relaxed.owl peptide bond cleavage involved in epidermal growth factor receptor ligand maturation|peptide bond cleavage involved in EGFR ligand maturation|EGFR ligand processing|EGFR ligand maturation|epidermal growth factor receptor ligand processing|EGFR ligand maturation by peptide bond cleavage bf 2011-06-07T03:08:41Z GO:0038005 biological_process owl:Class GO:1903278 biolink:NamedThing positive regulation of sodium ion export across plasma membrane Any process that activates or increases the frequency, rate or extent of sodium ion export across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl up regulation of sodium ion export|up regulation of sodium export|activation of sodium ion export from cell|upregulation of sodium export|activation of sodium ion export|positive regulation of sodium ion export from cell|upregulation of sodium ion export from cell|positive regulation of sodium ion export|up-regulation of sodium export|positive regulation of sodium export|upregulation of sodium ion export|up-regulation of sodium ion export from cell|up-regulation of sodium ion export|activation of sodium export|up regulation of sodium ion export from cell rl 2014-08-08T17:10:30Z GO:1903275 biological_process owl:Class GO:0015244 biolink:NamedThing fluconazole transmembrane transporter activity Enables the transfer of fluconazole from one side of a membrane to the other. Fluconazole is an antifungal drug used for oral candidiasis and cryptococcal meningitis; it is still under study for treatment of vaginal candidiasis and other fungal infections. tmpzr1t_l9r_go_relaxed.owl fluconazole transporter activity molecular_function owl:Class GO:0007202 biolink:NamedThing activation of phospholipase C activity The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand. tmpzr1t_l9r_go_relaxed.owl phospholipase C activation Note that this term refers to a signaling pathway, and should not be confused with function terms such as 'phospholipase activator activity ; GO:0016004'. biological_process owl:Class GO:0043124 biolink:NamedThing negative regulation of I-kappaB kinase/NF-kappaB signaling Any process that stops, prevents, or reduces the frequency, rate or extent of -kappaB kinase/NF-kappaB signaling. tmpzr1t_l9r_go_relaxed.owl negative regulation of I-kappaB kinase/NF-kappaB cascade|down-regulation of I-kappaB kinase/NF-kappaB cascade|down regulation of I-kappaB kinase/NF-kappaB cascade|inhibition of I-kappaB kinase/NF-kappaB cascade|downregulation of I-kappaB kinase/NF-kappaB cascade biological_process owl:Class GO:0150064 biolink:NamedThing vertebrate eye-specific patterning Early postnatal vertebrate developmental process, during which axons of retinal ganglion cells (RGCs), transmitting overlapping inputs from both eyes, segregate into distinct eye-specific non-overlapping regions in the dorsal lateral geniculate nucleus (dLGN) of the thalamus. tmpzr1t_l9r_go_relaxed.owl eye-specific patterning|eye-specific segregation|binocular vision development|vertebrate eye-specific segregation bc 2018-07-23T10:39:44Z biological_process owl:Class GO:0000485 biolink:NamedThing cleavage between 2S rRNA and LSU-rRNA of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Endonucleolytic cleavage between the LSU-rRNA and the 2S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000473 biolink:NamedThing maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8 S rRNA, 2S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990116 biolink:NamedThing ribosome-associated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide encoded by an aberrant message and associated with a stalled ribosome. Degradation is initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the ribosome-associated protein. tmpzr1t_l9r_go_relaxed.owl ribosome-associated degradation|ribosome-associated ubiquitin-dependent protein breakdown|ribosome-associated ubiquitin-dependent protein degradation|RAD|ribosome-associated ubiquitin-dependent protein catabolism pr 2013-06-05T11:46:01Z biological_process owl:Class GO:0032639 biolink:NamedThing TRAIL production The appearance of TRAIL due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TRAIL biosynthetic process Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0045553 biological_process owl:Class GO:0010603 biolink:NamedThing regulation of cytoplasmic mRNA processing body assembly Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901220 biolink:NamedThing negative regulation of cardiac chamber morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of cardiac chamber morphogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of heart chamber morphogenesis|down-regulation of cardiac chamber morphogenesis|inhibition of cardiac chamber morphogenesis|inhibition of heart chamber morphogenesis|down regulation of cardiac chamber morphogenesis|downregulation of heart chamber morphogenesis|negative regulation of heart chamber morphogenesis|downregulation of cardiac chamber morphogenesis|down regulation of heart chamber morphogenesis rl 2012-08-06T17:59:34Z biological_process owl:Class GO:0048162 biolink:NamedThing multi-layer follicle stage The stage in oogenesis when many layers of follicle cells surround the oocyte. There is a yolk nucleus (Balbiani's Body) near the germinal vesicle. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 5 biological_process owl:Class GO:0051601 biolink:NamedThing exocyst localization Any process in which an exocyst is transported to, or maintained in, a specific location. An exocyst is a protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of exocyst localization|exocyst localisation biological_process owl:Class GO:1904196 biolink:NamedThing negative regulation of granulosa cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of granulosa cell proliferation. tmpzr1t_l9r_go_relaxed.owl down regulation of granulosa cell proliferation|inhibition of granulosa cell proliferation|down-regulation of granulosa cell proliferation|downregulation of granulosa cell proliferation sl 2015-05-07T17:02:34Z biological_process owl:Class GO:0061651 biolink:NamedThing Atg12 conjugating enzyme activity Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y -> Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:17:36Z molecular_function owl:Class GO:0003301 biolink:NamedThing physiological cardiac muscle hypertrophy The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T10:38:10Z biological_process owl:Class GO:1902990 biolink:NamedThing mitotic telomere maintenance via semi-conservative replication Any telomere maintenance via semi-conservative replication that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl telomeric replication fork progression involved in mitotic cell cycle|telomeric fork progression involved in mitotic cell cycle|equal telomere replication involved in mitotic cell cycle jl 2014-05-08T11:13:49Z biological_process owl:Class GO:0001963 biolink:NamedThing synaptic transmission, dopaminergic The vesicular release of dopamine. from a presynapse, across a chemical synapse, the subsequent activation of dopamine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl dopaminergic synaptic transmission biological_process owl:Class GO:0036478 biolink:NamedThing L-dopa decarboxylase activator activity Interacts with and increases L-dopa decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl DDC activator activity GO:0036478 is reserved for cases when the activator directly interacts with L-dopa decarboxylase. When activation of L-dopa decarboxylase activity is achieved without enzyme binding, or when the mechanism of regulation is unknown, instead annotate to 'positive regulation of L-dopa decarboxylase activity ; GO:1903200'. bf 2014-07-24T10:10:51Z molecular_function owl:Class GO:1903200 biolink:NamedThing positive regulation of L-dopa decarboxylase activity Any process that activates or increases the frequency, rate or extent of L-dopa decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|up regulation of DOPA decarboxylase activity|upregulation of L-dopa decarboxylase activity|positive regulation of DOPA decarboxylase activity|activation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|activation of DDC activity|up-regulation of DOPA decarboxylase activity|upregulation of DDC activity|activation of L-dopa decarboxylase activity|up regulation of L-dopa decarboxylase activity|positive regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|activation of DOPA decarboxylase activity|up-regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|up-regulation of DDC activity|up-regulation of L-dopa decarboxylase activity|up regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|up regulation of DDC activity|upregulation of DOPA decarboxylase activity|positive regulation of DDC activity bf 2014-07-21T09:32:43Z biological_process owl:Class GO:0036177 biolink:NamedThing filamentous growth of a population of unicellular organisms in response to pH The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-29T01:43:04Z biological_process owl:Class GO:0007529 biolink:NamedThing establishment of synaptic specificity at neuromuscular junction The biological process in which a synapse between a motor neuron and a muscle is initially formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007528 biolink:NamedThing neuromuscular junction development A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl NMJ stability|neuromuscular junction organization|neuromuscular junction stability biological_process owl:Class GO:0009427 biolink:NamedThing bacterial-type flagellum basal body, distal rod, L ring One of the rings of the bacterial-type flagellar basal body; anchors the basal body to the outer membrane. tmpzr1t_l9r_go_relaxed.owl flagellar basal body, distal rod, L ring|flagellin-based flagellum basal body, distal rod, L ring cellular_component owl:Class GO:0009426 biolink:NamedThing bacterial-type flagellum basal body, distal rod The portion of the central rod of the bacterial-type flagellar basal body that is distal to the cell membrane; spans most of the distance between the inner and outer membranes. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum basal body, distal rod|flagellar basal body, distal rod cellular_component owl:Class GO:0001833 biolink:NamedThing inner cell mass cell proliferation The proliferation of cells in the inner cell mass. tmpzr1t_l9r_go_relaxed.owl See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14' and 'TS5, inner cell mass ; EMAP:24'. biological_process owl:Class GO:0010698 biolink:NamedThing acetyltransferase activator activity Binds to and increases the activity of an acetyltransferase, an enzyme which catalyzes the transfer of an acetyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl acetyltransferase stimulator activity molecular_function owl:Class GO:0001701 biolink:NamedThing in utero embryonic development The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035600 biolink:NamedThing tRNA methylthiolation The addition of a methylthioether group (-SCH3) to a nucleotide in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl bf 2010-11-12T01:34:02Z biological_process owl:Class GO:1902830 biolink:NamedThing negative regulation of spinal cord association neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of spinal cord association neuron differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of spinal cord dorsal interneuron differentiation|downregulation of spinal cord association neuron differentiation|down-regulation of spinal cord association neuron differentiation|inhibition of spinal cord association neuron differentiation|inhibition of spinal cord dorsal interneuron differentiation|down regulation of spinal cord dorsal interneuron differentiation|down regulation of spinal cord association neuron differentiation|downregulation of spinal cord dorsal interneuron differentiation|down-regulation of spinal cord dorsal interneuron differentiation mr 2014-03-31T17:11:55Z biological_process owl:Class GO:0051486 biolink:NamedThing isopentenyl diphosphate biosynthetic process, mevalonate pathway involved in terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate pathway that contributes to terpenoid biosynthesis. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP) through a series of mevalonate intermediates. tmpzr1t_l9r_go_relaxed.owl isopentenyl diphosphate formation, mevalonate pathway, during terpenoid biosynthesis|isopentenyl diphosphate biosynthetic process, mevalonate pathway, during terpenoid biosynthetic process|isopentenyl diphosphate synthesis, mevalonate pathway, during terpenoid synthesis|isopentenyl diphosphate formation, mevalonate pathway, during terpenoid formation|isopentenyl diphosphate anabolism, mevalonate pathway, during terpenoid anabolism biological_process owl:Class GO:0051079 biolink:NamedThing meiosis I nuclear membrane disassembly The controlled breakdown of the nuclear membranes during the first division of meiosis. tmpzr1t_l9r_go_relaxed.owl meiosis I nuclear envelope degradation|meiosis I nuclear envelope catabolism|meiosis I nuclear envelope disassembly|meiosis I nuclear envelope breakdown biological_process owl:Class GO:0071839 biolink:NamedThing apoptotic process in bone marrow cell The apoptotic process in cells in the bone marrow. tmpzr1t_l9r_go_relaxed.owl killing of bone marrow cells|apoptosis in bone marrow|programmed cell death of bone marrow cells by apoptosis|bone marrow cell programmed cell death by apoptosis|bone marrow cell apoptosis|programmed cell death, bone marrow cells mah 2010-09-10T12:19:18Z biological_process owl:Class GO:0033557 biolink:NamedThing Slx1-Slx4 complex A heterodimeric protein complex that possesses an endonuclease activity that specifically cleaves certain types of branched DNA structures; because such structures often form during the replication ribosomal DNA (rDNA) repeats, the complex plays a role in the maintenance of rDNA. The subunits are known as Slx1 and Slx 4 in budding and fission yeasts, and are conserved in eukaryotes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070057 biolink:NamedThing prospore membrane spindle pole body attachment site The region of the prospore membrane to which the spindle pole body (SPB) is anchored; the prospore membrane extends from the SPB attachment site to surround the spore nucleus. tmpzr1t_l9r_go_relaxed.owl forespore membrane SPB attachment site|forespore membrane spindle pole body attachment site|prospore membrane SPB attachment site cellular_component owl:Class GO:0004913 biolink:NamedThing interleukin-4 receptor activity Combining with interleukin-4 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-4 receptor activity|IL-4R molecular_function owl:Class GO:0003163 biolink:NamedThing sinoatrial node development The process whose specific outcome is the progression of the sinoatrial (SA) node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node. tmpzr1t_l9r_go_relaxed.owl SAN development|SA node development|sinus node development dph 2009-10-01T02:06:09Z biological_process owl:Class GO:0038092 biolink:NamedThing nodal signaling pathway A series of molecular signals initiated by the binding of a nodal protein to an activin receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl nodal signaling|nodal signalling pathway bf 2012-02-16T02:44:02Z biological_process owl:Class GO:2000473 biolink:NamedThing positive regulation of hematopoietic stem cell migration Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of hemopoietic stem cell migration bf 2011-03-09T09:35:25Z biological_process owl:Class GO:0036516 biolink:NamedThing chemoattraction of dopaminergic neuron axon The process in which a dopaminergic neuron growth cone is directed to a specific target site in response to an attractive chemical signal. tmpzr1t_l9r_go_relaxed.owl chemoattraction of DA axon|chemoattraction of dopaminergic axon bf 2015-12-17T11:23:11Z biological_process owl:Class GO:0036514 biolink:NamedThing dopaminergic neuron axon guidance The chemotaxis process that directs the migration of an axon growth cone of a dopaminergic neuron to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl mdDA axon guidance|DA axon guidance|dopaminergic axon guidance bf 2015-12-17T11:14:20Z biological_process owl:Class GO:0061318 biolink:NamedThing renal filtration cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a renal filtration cell. Renal filtration cells are specialized cells of the renal system that filter fluids by charge, size or both. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-24T12:18:35Z biological_process owl:Class GO:1903373 biolink:NamedThing positive regulation of endoplasmic reticulum tubular network organization Any process that activates or increases the frequency, rate or extent of endoplasmic reticulum tubular network organization. tmpzr1t_l9r_go_relaxed.owl up-regulation of endoplasmic reticulum tubular network organization|positive regulation of ER tubular network organization|up regulation of ER tubular network organisation|activation of endoplasmic reticulum tubular network organization|up-regulation of ER tubular network organisation|activation of ER tubular network organization|up regulation of endoplasmic reticulum tubular network organisation|upregulation of ER tubular network organization|up regulation of endoplasmic reticulum tubular network organization|positive regulation of endoplasmic reticulum tubular network organisation|activation of endoplasmic reticulum tubular network organisation|upregulation of endoplasmic reticulum tubular network organization|upregulation of endoplasmic reticulum tubular network organisation|up-regulation of ER tubular network organization|upregulation of ER tubular network organisation|activation of ER tubular network organisation|positive regulation of ER tubular network organisation|up-regulation of endoplasmic reticulum tubular network organisation|up regulation of ER tubular network organization als 2014-08-22T11:01:31Z biological_process owl:Class GO:0061674 biolink:NamedThing gap filling involved in double-strand break repair via nonhomologous end joining Repair of the gaps in the DNA helix using a discontinuous template during double-strand break repair via nonhomologous end joining. tmpzr1t_l9r_go_relaxed.owl dph 2015-01-05T10:07:32Z biological_process owl:Class GO:0140249 biolink:NamedThing protein catabolic process at postsynapse The chemical reactions and pathways resulting in the breakdown of a protein at a postsynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/204 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:25:04Z biological_process owl:Class GO:2000758 biolink:NamedThing positive regulation of peptidyl-lysine acetylation Any process that activates or increases the frequency, rate or extent of peptidyl-lysine acetylation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-16T09:51:35Z biological_process owl:Class GO:0061612 biolink:NamedThing galactose to glucose-1-phosphate metabolic process The chemical reactions and pathways in which galactose, the aldohexose galacto-hexose, is converted to glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-04T08:18:49Z biological_process owl:Class GO:0003978 biolink:NamedThing UDP-glucose 4-epimerase activity Catalysis of the reaction: UDP-glucose = UDP-galactose. tmpzr1t_l9r_go_relaxed.owl UDPgalactose 4-epimerase activity|uridine diphosphoglucose epimerase activity|uridine diphosphoglucose 4-epimerase activity|UDPglucose 4-epimerase activity|UDP-D-galactose 4-epimerase activity|uridine diphospho-galactose-4-epimerase activity|uridine diphosphate glucose 4-epimerase activity|UDPG-4-epimerase activity|4-epimerase activity|galactowaldenase activity|UDP-glucose epimerase activity|uridine diphosphate galactose 4-epimerase activity|UDP-galactose 4-epimerase activity EC:5.1.3.2|Reactome:R-HSA-5610036|MetaCyc:UDPGLUCEPIM-RXN|Reactome:R-HSA-70369|RHEA:22168 molecular_function owl:Class GO:0014018 biolink:NamedThing neuroblast fate specification The process in which a cell becomes capable of differentiating autonomously into a neuroblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014017 biolink:NamedThing neuroblast fate commitment The process in which the developmental fate of a cell becomes restricted such that it will differentiate into a neuroblast. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032106 biolink:NamedThing positive regulation of response to extracellular stimulus Any process that activates, maintains or increases the rate of a response to an extracellular stimulus. tmpzr1t_l9r_go_relaxed.owl activation of response to extracellular stimulus|up-regulation of response to extracellular stimulus|upregulation of response to extracellular stimulus|up regulation of response to extracellular stimulus|stimulation of response to extracellular stimulus biological_process owl:Class GO:0002265 biolink:NamedThing astrocyte activation involved in immune response A change in the morphology or behavior of an astrocyte resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl astrocyte activation during immune response biological_process owl:Class GO:0048628 biolink:NamedThing myoblast maturation A developmental process, independent of morphogenetic (shape) change, that is required for a myoblast to attain its fully functional state. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048627 biolink:NamedThing myoblast development The process whose specific outcome is the progression of the myoblast over time, from its formation to the mature structure. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031240 biolink:NamedThing external side of cell outer membrane The side of the outer membrane that is opposite to the side that faces the periplasm of the cell. tmpzr1t_l9r_go_relaxed.owl external side of outer membrane|external leaflet of cell outer membrane In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane. cellular_component owl:Class GO:0002457 biolink:NamedThing T cell antigen processing and presentation The process in which a T cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte antigen processing and presentation|T-cell antigen processing and presentation|T lymphocyte antigen processing and presentation biological_process owl:Class GO:0034196 biolink:NamedThing acylglycerol transport The directed movement of an acylglycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An acylglycerol is any mono-, di- or triester of glycerol with (one or more) fatty acids. tmpzr1t_l9r_go_relaxed.owl glyceride transport biological_process owl:Class GO:0035578 biolink:NamedThing azurophil granule lumen The volume enclosed by the membrane of an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid. tmpzr1t_l9r_go_relaxed.owl primary granule lumen bf 2010-10-05T01:30:33Z cellular_component owl:Class GO:0038025 biolink:NamedThing reelin receptor activity Combining with the secreted glycoprotein reelin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl reeler receptor activity bf 2011-08-02T12:01:25Z molecular_function owl:Class GO:0038026 biolink:NamedThing reelin-mediated signaling pathway A series of molecular signals initiated by the binding of reelin (a secreted glycoprotein) to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl reelin-mediated signalling pathway|reelin-mediated signal transduction pathway|reeler-mediated signaling pathway bf 2011-08-02T02:06:18Z biological_process owl:Class GO:1902978 biolink:NamedThing premeiotic DNA replication termination Any DNA replication termination involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication termination involved in meiotic cell cycle DNA replication|DNA replication termination involved in meiotic DNA replication jl 2014-05-06T19:19:43Z biological_process owl:Class GO:0150003 biolink:NamedThing regulation of spontaneous synaptic transmission Any process that modulates the frequency, rate or extent of spontaneous synaptic transmission. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000892 biolink:NamedThing cellobiose catabolic process The chemical reactions and pathways resulting in the breakdown of a cellobiose. tmpzr1t_l9r_go_relaxed.owl cellobiose catabolism jl 2011-07-28T01:35:38Z biological_process owl:Class GO:2000840 biolink:NamedThing regulation of dehydroepiandrosterone secretion Any process that modulates the frequency, rate or extent of dehydroepiandrosterone secretion. tmpzr1t_l9r_go_relaxed.owl regulation of dehydroisoandrosterone secretion|regulation of DHEA secretion|regulation of 3beta-hydroxyandrost-5-en-17-one secretion bf 2011-07-26T08:41:29Z biological_process owl:Class GO:0035942 biolink:NamedThing dehydroepiandrosterone secretion The regulated release of dehydroepiandrosterone (3beta-hydroxyandrost-5-en-17-one) into the circulatory system. tmpzr1t_l9r_go_relaxed.owl dehydroisoandrosterone secretion|DHEA secretion|3beta-hydroxyandrost-5-en-17-one secretion bf 2011-07-25T02:13:54Z biological_process owl:Class GO:0021559 biolink:NamedThing trigeminal nerve development The process whose specific outcome is the progression of the trigeminal nerve over time, from its formation to the mature structure. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae. tmpzr1t_l9r_go_relaxed.owl cranial nerve 5 development|cranial nerve V development|CN V development biological_process owl:Class GO:0120169 biolink:NamedThing detection of cold stimulus involved in thermoception The series of events in which a cold stimulus is received and converted into a molecular signal as part of thermoception. tmpzr1t_l9r_go_relaxed.owl sensory detection of cold stimulus during thermoception|thermoception, sensory transduction of cold stimulus|thermoception, sensory detection of cold stimulus|sensory transduction of cold stimulus during thermoception krc 2018-05-21T20:36:05Z biological_process owl:Class GO:0062035 biolink:NamedThing sensory perception of cold stimulus The series of events required for an organism to receive a cold temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-30T13:48:10Z biological_process owl:Class GO:0050655 biolink:NamedThing dermatan sulfate proteoglycan metabolic process The chemical reactions and pathways involving dermatan sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are dermatan sulfate (chondroitin sulfate B). Dermatan sulfate is a glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate B proteoglycan metabolic process|dermatan sulphate proteoglycan metabolism|dermatan sulfate proteoglycan metabolism|chondroitin sulfate B proteoglycan metabolism|dermatan sulphate proteoglycan metabolic process biological_process owl:Class GO:1990063 biolink:NamedThing Bam protein complex Protein complex which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. In E. coli it is composed of BamABCDE, of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE. BamA interacts directly with BamB and the BamCDE subcomplex. tmpzr1t_l9r_go_relaxed.owl OMP complex bhm 2013-03-20T15:42:57Z cellular_component owl:Class GO:2001255 biolink:NamedThing positive regulation of histone H3-K36 trimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K36 trimethylation. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-06T07:38:24Z biological_process owl:Class GO:0003413 biolink:NamedThing chondrocyte differentiation involved in endochondral bone morphogenesis The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the development of a bone. A chondrocyte is a polymorphic cell that forms cartilage. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T08:39:58Z biological_process owl:Class GO:0012506 biolink:NamedThing vesicle membrane The lipid bilayer surrounding any membrane-bounded vesicle in the cell. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1153182838 cellular_component owl:Class GO:1903980 biolink:NamedThing positive regulation of microglial cell activation Any process that activates or increases the frequency, rate or extent of microglial cell activation. tmpzr1t_l9r_go_relaxed.owl up-regulation of microglial cell activation|up regulation of microglial cell activation|upregulation of microglial cell activation|activation of microglial cell activation nc 2015-03-02T15:17:44Z biological_process owl:Class GO:0001774 biolink:NamedThing microglial cell activation The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048933 biolink:NamedThing afferent axon development in posterior lateral line nerve The process whose specific outcome is the progression of an afferent axon in the posterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in the posterior lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072255 biolink:NamedThing metanephric glomerular mesangial cell development The process whose specific outcome is the progression of a glomerular mesangial cell in the metanephros over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-19T04:06:58Z biological_process owl:Class GO:0048195 biolink:NamedThing Golgi membrane priming complex assembly The aggregation, arrangement and bonding together of a set of components to form a membrane priming complex. An incoming coat component recognizes both GTPase and a membrane protein to form the priming complex. tmpzr1t_l9r_go_relaxed.owl formation of dictyosome membrane priming complex|formation of Golgi membrane priming complex biological_process owl:Class GO:0098564 biolink:NamedThing trans-Golgi network transport vesicle lumen The volume enclosed within the membrane of a trans-Golgi network transport vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007561 biolink:NamedThing imaginal disc eversion The eversion (turning inside out) of imaginal discs from their peripodial sacs, resulting in movement of the epithelium to the outside of the larval epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903996 biolink:NamedThing negative regulation of non-membrane spanning protein tyrosine kinase activity Any process that stops, prevents or reduces the frequency, rate or extent of non-membrane spanning protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of p60c-src protein tyrosine kinase activity|negative regulation of janus kinase 2 activity|downregulation of janus kinase 1 activity|negative regulation of Bruton's tyrosine kinase activity|down-regulation of Bruton's tyrosine kinase activity|down-regulation of janus kinase 3 activity|inhibition of non-specific protein-tyrosine kinase activity|negative regulation of p60c-src protein tyrosine kinase activity|negative regulation of non-specific protein-tyrosine kinase activity|down regulation of focal adhesion kinase activity|inhibition of janus kinase 3 activity|downregulation of focal adhesion kinase activity|down regulation of janus kinase 2 activity|down-regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|downregulation of non-membrane spanning protein tyrosine kinase activity|downregulation of janus kinase 3 activity|negative regulation of focal adhesion kinase activity|down regulation of janus kinase 3 activity|down regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|down-regulation of non-membrane spanning protein tyrosine kinase activity|down-regulation of janus kinase 1 activity|downregulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|inhibition of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|down regulation of non-specific protein-tyrosine kinase activity|negative regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity|negative regulation of cytoplasmic protein tyrosine kinase activity|down regulation of janus kinase 1 activity|downregulation of janus kinase 2 activity|negative regulation of janus kinase 1 activity|inhibition of cytoplasmic protein tyrosine kinase activity|down-regulation of non-specific protein-tyrosine kinase activity|inhibition of Bruton's tyrosine kinase activity|inhibition of janus kinase 1 activity|down-regulation of janus kinase 2 activity|down regulation of Bruton's tyrosine kinase activity|downregulation of non-specific protein-tyrosine kinase activity|down regulation of cytoplasmic protein tyrosine kinase activity|downregulation of p60c-src protein tyrosine kinase activity|downregulation of Bruton's tyrosine kinase activity|inhibition of focal adhesion kinase activity|down-regulation of cytoplasmic protein tyrosine kinase activity|down-regulation of focal adhesion kinase activity|down-regulation of p60c-src protein tyrosine kinase activity|down regulation of non-membrane spanning protein tyrosine kinase activity|inhibition of p60c-src protein tyrosine kinase activity|inhibition of janus kinase 2 activity|downregulation of cytoplasmic protein tyrosine kinase activity|negative regulation of janus kinase 3 activity|inhibition of non-membrane spanning protein tyrosine kinase activity nc 2015-03-05T16:34:41Z biological_process owl:Class GO:0031392 biolink:NamedThing regulation of prostaglandin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin. tmpzr1t_l9r_go_relaxed.owl regulation of prostaglandin anabolism|regulation of prostaglandin formation|regulation of prostaglandin synthesis|regulation of prostaglandin biosynthesis biological_process owl:Class GO:0001516 biolink:NamedThing prostaglandin biosynthetic process The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring. tmpzr1t_l9r_go_relaxed.owl prostaglandin anabolism|prostaglandin biosynthesis|prostaglandin formation|prostaglandin synthesis biological_process owl:Class GO:0036479 biolink:NamedThing peroxidase inhibitor activity Binds to and stops, prevents or reduces the activity of peroxidase. tmpzr1t_l9r_go_relaxed.owl GO:0036479 is reserved for cases when the inhibitor directly interacts with the peroxidase. When inhibition of peroxidase activity is achieved without enzyme binding, or when the mechanism of regulation is unknown, instead annotate to 'negative regulation of peroxidase activity ; GO:2000469'. bf 2014-07-24T10:14:45Z molecular_function owl:Class GO:0140631 biolink:NamedThing aldehyde dehydrogenase (NAD+) inhibitor activity Binds to and stops, prevents or reduces the activity of aldehyde dehydrogenase (NAD+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21265 pg 2021-04-09T09:40:21Z molecular_function owl:Class GO:0034672 biolink:NamedThing anterior/posterior pattern specification involved in pronephros development The developmental process that results in the creation of defined areas or spaces within the pronephros along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl anterior/posterior pattern specification involved in pronephric kidney development biological_process owl:Class GO:0032260 biolink:NamedThing response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus received in the context of the jasmonic acid- and ethylene (ethene)-dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. tmpzr1t_l9r_go_relaxed.owl response to jasmonic acid stimulus during jasmonic acid and ethylene-dependent systemic resistance biological_process owl:Class GO:0043162 biolink:NamedThing ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation. tmpzr1t_l9r_go_relaxed.owl ubiquitin-dependent protein catabolism via the MVB pathway|ubiquitin-dependent protein catabolic process via the MVB pathway|ubiquitin-dependent protein breakdown via the multivesicular body pathway|ubiquitin-dependent protein degradation via the multivesicular body pathway biological_process owl:Class GO:0014016 biolink:NamedThing neuroblast differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuroblast. There are at least four stages through which the pluripotent cells of epiblast or blastula become neuroblasts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002406 biolink:NamedThing antigen sampling by M cells in mucosal-associated lymphoid tissue The process of antigen samples carried out by M cells in the mucosal-associated lymphoid tissue. tmpzr1t_l9r_go_relaxed.owl antigen sampling by M cells in MALT biological_process owl:Class GO:0048641 biolink:NamedThing regulation of skeletal muscle tissue development Any process that modulates the frequency, rate or extent of skeletal muscle tissue development. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016204 biolink:NamedThing determination of muscle attachment site The process that mediates the transfer of information from the cells of a muscle to those of its intended target, thereby identifying the target site. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016203 biolink:NamedThing muscle attachment The developmental process in which a skeletal muscle attaches to its target (such as bone or body wall). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034551 biolink:NamedThing mitochondrial respiratory chain complex III assembly The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as ubiquinol-cytochrome c reductase), in the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrial cytochrome bc(1) complex assembly biological_process owl:Class GO:0003066 biolink:NamedThing positive regulation of heart rate by norepinephrine The process in which the secretion of norepinephrine into the bloodstream or released from nerve endings increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl norepinephrine cardiac chronotropy|noradrenaline cardiac chronotropy|noradrenaline regulation of the rate of heart muscle contraction|positive regulation of heart contraction rate by norepinephrine|positive regulation of heart rate by adrenaline biological_process owl:Class GO:0005125 biolink:NamedThing cytokine activity The activity of a soluble extracellular gene product that interacts with a receptor to effect a change in the activity of the receptor to control the survival, growth, differentiation and effector function of tissues and cells. tmpzr1t_l9r_go_relaxed.owl paracrine activity|autocrine activity https://github.com/geneontology/go-ontology/issues/19116 molecular_function owl:Class GO:1902944 biolink:NamedThing aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process Any aspartic-type endopeptidase activity that is involved in amyloid precursor protein catabolic process. tmpzr1t_l9r_go_relaxed.owl aspartic endopeptidase activity involved in amyloid precursor protein breakdown|aspartic endopeptidase activity involved in amyloid precursor protein catabolism|aspartic endopeptidase activity involved in APP catabolic process|carboxyl protease activity involved in APP catabolism|aspartate protease activity involved in amyloid precursor protein catabolism|aspartyl protease activity involved in APP catabolism|aspartyl protease activity involved in amyloid precursor protein breakdown|aspartic endopeptidase activity involved in amyloid precursor protein degradation|carboxyl protease activity involved in APP catabolic process|aspartic-type endopeptidase activity involved in amyloid precursor protein breakdown|aspartic protease activity involved in amyloid precursor protein breakdown|carboxyl protease activity involved in amyloid precursor protein breakdown|aspartic endopeptidase activity involved in amyloid precursor protein catabolic process|carboxyl protease activity involved in amyloid precursor protein catabolism|aspartate protease activity involved in APP catabolism|aspartic protease activity involved in amyloid precursor protein degradation|aspartic-type endopeptidase activity involved in amyloid precursor protein catabolism|aspartic protease activity involved in APP catabolic process|aspartyl protease activity involved in amyloid precursor protein catabolism|aspartic protease activity involved in amyloid precursor protein catabolic process|aspartate protease activity involved in APP catabolic process|aspartic protease activity involved in amyloid precursor protein catabolism|aspartic-type endopeptidase activity involved in APP catabolic process|carboxyl protease activity involved in amyloid precursor protein degradation|aspartic protease activity involved in APP catabolism|aspartic endopeptidase activity involved in APP catabolism|carboxyl protease activity involved in amyloid precursor protein catabolic process|aspartic-type endopeptidase activity involved in APP catabolism|aspartate protease activity involved in amyloid precursor protein breakdown|aspartyl protease activity involved in APP catabolic process|aspartyl protease activity involved in amyloid precursor protein catabolic process|aspartate protease activity involved in amyloid precursor protein catabolic process|aspartyl protease activity involved in amyloid precursor protein degradation|aspartic-type endopeptidase activity involved in amyloid precursor protein degradation|aspartate protease activity involved in amyloid precursor protein degradation sjp 2014-05-02T07:59:42Z molecular_function owl:Class GO:0050953 biolink:NamedThing sensory perception of light stimulus The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043402 biolink:NamedThing glucocorticoid mediated signaling pathway A series of molecular signals mediated by the detection of a glucocorticoid hormone. tmpzr1t_l9r_go_relaxed.owl glucocorticoid mediated signalling biological_process owl:Class GO:0110150 biolink:NamedThing negative regulation of biomineralization Any process that stops, prevents, or reduces the frequency, rate or extent of biomineralization, the formation and deposition of mineral crystals by living organisms. tmpzr1t_l9r_go_relaxed.owl negative regulation of mineralisation|negative regulation of mineralization|negative regulation of biomineralisation|negative regulation of biomineral formation kmv 2019-06-10T18:12:24Z biological_process owl:Class GO:0021817 biolink:NamedThing nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration The microtubule-mediated movement of the nucleus that is required for the movement of cells along radial glial fibers as a component of the process of cerebral cortex glial-mediated radial cell migration. tmpzr1t_l9r_go_relaxed.owl nucleokinesis involved in cell locomotion in cerebral cortex radial glia guided migration|nucleokinesis involved in cell locomotion in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:1905059 biolink:NamedThing P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration A calcium-transporting P-type ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl plasma membrane Ca-ATPase involved in regulation of postsynaptic cytosolic calcium ion concentration|ATPase-coupled calcium ion transmembrane transporter activity involved in regulation of postsynaptic cytosolic calcium levels|calcium ABC transporter involved in regulation of postsynaptic cytosolic calcium ion concentration|sarcoplasmic reticulum ATPase involved in regulation of postsynaptic cytosolic calcium ion concentration|Ca(2+)-transporting ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|ATP phosphohydrolase (Ca2+-transporting) involved in regulation of postsynaptic cytosolic calcium ion concentration|Ca2+-pumping ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|Ca2+-transporting ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|calcium efflux ATPase involved in regulation of postsynaptic cytosolic calcium ion concentration|sarco(endo)plasmic reticulum Ca2+-ATPase involved in regulation of postsynaptic cytosolic calcium ion concentration|calcium-transporting ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|calcium transporting ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|calcium-translocating P-type ATPase activity involved in regulation of postsynaptic cytosolic calcium ion concentration|calcium-transporting ATPase activity involved in regulation of postsynaptic cytosolic calcium levels dos 2016-03-18T12:32:08Z molecular_function owl:Class GO:0003361 biolink:NamedThing noradrenergic neuron differentiation involved in brainstem development The process in which a relatively unspecialized cell acquires specialized features of an noradrenergic neuron that is part of the brainstem. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-03T10:53:30Z biological_process owl:Class GO:0061028 biolink:NamedThing establishment of endothelial barrier The establishment of a barrier between endothelial cell layers, such as those in the brain, lung or intestine, to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T09:26:59Z biological_process owl:Class GO:0008428 biolink:NamedThing ribonuclease inhibitor activity Binds to and stops, prevents or reduces the activity of ribonuclease. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007078 biolink:NamedThing lamin depolymerization The cell cycle process in which lamin is depolymerized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000269 biolink:NamedThing regulation of fibroblast apoptotic process Any process that modulates the frequency, rate or extent of fibroblast apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of fibroblast apoptosis jl 2010-11-23T01:07:23Z biological_process owl:Class GO:0044346 biolink:NamedThing fibroblast apoptotic process Any apoptotic process in a fibroblast, a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl fibroblast apoptosis jl 2010-09-23T11:33:38Z biological_process owl:Class GO:0040025 biolink:NamedThing vulval development The process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902268 biolink:NamedThing negative regulation of polyamine transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of polyamine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl down regulation of polyamine transmembrane transport|downregulation of polyamine transmembrane transport|inhibition of polyamine transmembrane transport|down-regulation of polyamine transmembrane transport mcc 2013-06-28T21:34:42Z biological_process owl:Class GO:1990926 biolink:NamedThing short-term synaptic potentiation The process by which synaptic transmission, induced by the arrival of a spike (action potential) at a synapse, acts to increase the amount of neurotransmitter released in response to the arrival of subsequent spikes. This effect is seen when a train of closely space spikes arrives at a synapse with a low initial release probability. It occurs in a timeframe of tens to hundreds of milliseconds. tmpzr1t_l9r_go_relaxed.owl synaptic facilitation The mechanism of short term potentiation is thought to be either increased influx of calcium into the presynapse (Zucker and Regeh, 2002 PMID:11826273) increased sensitivity to calcium (Jackman et al., 2016 PMID:26738595) or both. sp 2016-02-12T13:17:18Z biological_process owl:Class GO:0071517 biolink:NamedThing maintenance of imprinting at mating-type locus Any process involved in preserving the structure of a stable single-strand DNA lesion that triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication. tmpzr1t_l9r_go_relaxed.owl mating type determination, maintenance of imprinting mah 2010-01-06T01:17:05Z biological_process owl:Class GO:1903371 biolink:NamedThing regulation of endoplasmic reticulum tubular network organization Any process that modulates the frequency, rate or extent of endoplasmic reticulum tubular network organization. tmpzr1t_l9r_go_relaxed.owl regulation of endoplasmic reticulum tubular network organisation|regulation of ER tubular network organization|regulation of ER tubular network organisation als 2014-08-22T11:01:14Z biological_process owl:Class GO:0072124 biolink:NamedThing regulation of glomerular mesangial cell proliferation Any process that modulates the frequency, rate or extent of glomerular mesangial cell proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T01:46:12Z biological_process owl:Class GO:0000312 biolink:NamedThing plastid small ribosomal subunit The smaller of the two subunits of a plastid ribosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903348 biolink:NamedThing positive regulation of bicellular tight junction assembly Any process that activates or increases the frequency, rate or extent of tight junction assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of tight junction formation|activation of tight junction formation|activation of tight junction assembly|positive regulation of tight junction formation|up-regulation of tight junction formation|up regulation of tight junction formation|up regulation of tight junction assembly|up-regulation of tight junction assembly|upregulation of tight junction assembly pr 2014-08-19T11:05:06Z biological_process owl:Class GO:0001746 biolink:NamedThing Bolwig's organ morphogenesis The morphogenetic process in which the anatomical structures of the larval eye in Drosophila are generated and organized. The larval eye in Drosophila is a relatively simple sensory system composed of Bolwig's organs: two clusters, each composed of 12 photoreceptor cells from which axons extend in a single fascicle to the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055034 biolink:NamedThing Bolwig's organ development The process whose specific outcome is the progression of the Bolwig's organ over time, from its formation to the mature structure. The larval eye in Drosophila is a relatively simple sensory system composed of Bolwig's organs: two clusters, each composed of 12 photoreceptor cells from which axons extend in a single fascicle to the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000801 biolink:NamedThing central element A structural unit of the synaptonemal complex found between the lateral elements. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061254 biolink:NamedThing mesonephric glomerular parietal epithelial cell development The process whose specific outcome is the progression of a mesonephric glomerular parietal epithelial cell over time, from its formation to the mature structure. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:30:36Z biological_process owl:Class GO:0000088 biolink:NamedThing mitotic prophase The cell cycle phase which is the first stage of M phase of mitosis and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0010709 biolink:NamedThing heteroduplex formation involved in double-strand break repair via synthesis-dependent strand annealing The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules resulting in the error-free repair of a double-strand break without the exchange of adjacent sequences. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046813 biolink:NamedThing receptor-mediated virion attachment to host cell The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface. tmpzr1t_l9r_go_relaxed.owl virion attachment, binding of host cell surface receptor biological_process owl:Class GO:1904319 biolink:NamedThing negative regulation of smooth muscle contraction involved in micturition Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction involved in micturition. tmpzr1t_l9r_go_relaxed.owl downregulation of urinary bladder smooth muscle contraction involved in micturition|negative regulation of urinary bladder smooth muscle contraction involved in micturition|down regulation of smooth muscle contraction involved in micturition|inhibition of smooth muscle contraction involved in urination|downregulation of smooth muscle contraction involved in urination|inhibition of smooth muscle contraction involved in micturition|down regulation of smooth muscle contraction involved in urination|down-regulation of smooth muscle contraction involved in urination|downregulation of smooth muscle contraction involved in micturition|down-regulation of urinary bladder smooth muscle contraction involved in micturition|negative regulation of smooth muscle contraction involved in urination|inhibition of urinary bladder smooth muscle contraction involved in micturition|down-regulation of smooth muscle contraction involved in micturition|down regulation of urinary bladder smooth muscle contraction involved in micturition sl 2015-06-10T18:46:17Z biological_process owl:Class GO:2000841 biolink:NamedThing negative regulation of dehydroepiandrosterone secretion Any process that stops, prevents or reduces the frequency, rate or extent of dehydroepiandrosterone secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of 3beta-hydroxyandrost-5-en-17-one secretion|negative regulation of DHEA secretion|negative regulation of dehydroisoandrosterone secretion bf 2011-07-26T08:41:33Z biological_process owl:Class GO:0098572 biolink:NamedThing stromal side of plastid thylakoid membrane The side (leaflet) of the plastid thylakoid membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048354 biolink:NamedThing mucilage biosynthetic process involved in seed coat development The chemical reactions and pathways resulting in the formation of mucilage that occur as part of seed coat development; mucilage is normally synthesized during seed coat development. tmpzr1t_l9r_go_relaxed.owl mucilage biosynthetic process during seed coat development|mucilage synthesis during seed coat development|mucilage anabolism during seed coat development|mucilage formation during seed coat development biological_process owl:Class GO:0048366 biolink:NamedThing leaf development The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034383 biolink:NamedThing low-density lipoprotein particle clearance The process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl LDL clearance biological_process owl:Class GO:0090495 biolink:NamedThing low-density lipoprotein particle disassembly The disaggregation of a low-density lipoprotein particle into its constituent components. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-17T11:48:56Z biological_process owl:Class GO:0007542 biolink:NamedThing primary sex determination, germ-line The transmission of information about sexual status, from the initial general determination, to signals specific to the germ-line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090133 biolink:NamedThing mesendoderm migration The process in which the population of cells that make up a mesendoderm undergo directed movement. The mesendoderm is the epithelial tissue that gives rise to both mesoderm and endoderm. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:22:08Z biological_process owl:Class GO:0034507 biolink:NamedThing chromosome, centromeric outer repeat region The portion of the centromeric region of a chromosome that flanks the core region, encompassing repeated regions of a chromosome centromere and the proteins that bind to it. tmpzr1t_l9r_go_relaxed.owl chromosome, centric outer repeat region cellular_component owl:Class GO:1990688 biolink:NamedThing Golgi vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane The joining of the lipid bilayer membrane around a Golgi vesicle to the lipid bilayer membrane of the ERGIC. Such vesicles include COPI-coated transport vesicles involved in retrograde transport. tmpzr1t_l9r_go_relaxed.owl Golgi vesicle fusion with ER-Golgi intermediate compartment membrane|Golgi vesicle fusion with ERGIC membrane bhm 2015-03-12T09:34:21Z biological_process owl:Class GO:0044207 biolink:NamedThing translation initiation ternary complex A ribonucleoprotein complex that contains aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator). tmpzr1t_l9r_go_relaxed.owl Met-tRNA/eIF2.GTP ternary complex|translation initiation (ternary) complex jl 2009-10-22T02:38:55Z cellular_component owl:Class GO:0030293 biolink:NamedThing transmembrane receptor protein tyrosine kinase inhibitor activity Binds to and stops, prevents or reduces the activity of a transmembrane receptor protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062247 biolink:NamedThing chloroplast vesicle A intracellular vesicle that is part of a chloroplast. tmpzr1t_l9r_go_relaxed.owl dph 2020-05-01T12:10:16Z cellular_component owl:Class GO:0060254 biolink:NamedThing regulation of N-terminal protein palmitoylation Any process that modulates the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001669 biolink:NamedThing acrosomal vesicle A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome. tmpzr1t_l9r_go_relaxed.owl acrosomal granule|acrosome Wikipedia:Acrosome cellular_component owl:Class GO:0008526 biolink:NamedThing phosphatidylinositol transfer activity Removes phosphatidylinositol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl intermembrane phosphotidylinositol transfer activity|phosphatidylinositol carrier activity|phosphatidylinositol transporter activity|intermembrane phosphatidylinositol transfer activity Reactome:R-HSA-8869241|Reactome:R-HSA-8874470 krc 2017-03-17T04:22:47Z GO:0120018 molecular_function owl:Class GO:0021784 biolink:NamedThing postganglionic parasympathetic fiber development The process whose specific outcome is the progression of the postganglionic portion of the parasympathetic fiber over time, from its formation to the mature structure. The parasympathetic fiber is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048486 biolink:NamedThing parasympathetic nervous system development The process whose specific outcome is the progression of the parasympathetic nervous system over time, from its formation to the mature structure. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061681 biolink:NamedThing Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate and yields pyruvate and D-glyceraldehyde-3-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ENTNER-DOUDOROFF-PWY-III dph 2015-01-22T08:55:22Z biological_process owl:Class GO:0015132 biolink:NamedThing prostaglandin transmembrane transporter activity Enables the transfer of prostaglandins from one side of a membrane to the other. A prostaglandin is any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities. tmpzr1t_l9r_go_relaxed.owl prostaglandin/thromboxane transporter activity Reactome:R-HSA-5661188|Reactome:R-HSA-879528 molecular_function owl:Class GO:0075299 biolink:NamedThing positive regulation of zygospore formation Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043001 biolink:NamedThing Golgi to plasma membrane protein transport The directed movement of proteins from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990207 biolink:NamedThing EmrE multidrug transporter complex A transmembrane protein complex capable of transporting positively charged hydrophobic drugs across the plasma membrane thereby involved in conferring resistance to a wide range of toxic compounds (e.g. methyl viologen, ethidium bromide and acriflavine). It is commonly found in bacteria. In E. coli it forms a homodimer. tmpzr1t_l9r_go_relaxed.owl EmrE complex bhm 2013-10-08T08:37:52Z cellular_component owl:Class GO:0044592 biolink:NamedThing response to pullulan A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of pullulan stimulus. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-26T03:59:06Z biological_process owl:Class GO:1905586 biolink:NamedThing negative regulation of outer hair cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of outer hair cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of cochlear outer hair cell apoptosis|down-regulation of cochlear outer hair cell apoptotic process|negative regulation of cochlear outer hair cell apoptotic process|downregulation of cochlear outer hair cell apoptosis|down regulation of cochlear outer hair cell apoptotic process|down-regulation of cochlear outer hair cell apoptosis|inhibition of outer hair cell apoptosis|down regulation of outer hair cell apoptosis|inhibition of cochlear outer hair cell apoptotic process|inhibition of outer hair cell apoptotic process|down-regulation of outer hair cell apoptotic process|downregulation of outer hair cell apoptotic process|downregulation of cochlear outer hair cell apoptotic process|downregulation of outer hair cell apoptosis|down regulation of outer hair cell apoptotic process|negative regulation of cochlear outer hair cell apoptosis|down-regulation of outer hair cell apoptosis|negative regulation of outer hair cell apoptosis|down regulation of cochlear outer hair cell apoptosis sl 2016-10-24T22:35:43Z biological_process owl:Class GO:1905584 biolink:NamedThing outer hair cell apoptotic process Any apoptotic process in an outer hair cell. tmpzr1t_l9r_go_relaxed.owl cochlear outer hair cell apoptotic process|outer hair cell apoptosis|cochlear outer hair cell apoptosis sl 2016-10-21T22:42:13Z biological_process owl:Class GO:0043534 biolink:NamedThing blood vessel endothelial cell migration The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002014 biolink:NamedThing vasoconstriction of artery involved in ischemic response to lowering of systemic arterial blood pressure The vasoconstriction that is triggered by vasomotor excitation resulting from the detection of high carbon dioxide levels in the vasomotor center of the central nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015823 biolink:NamedThing phenylalanine transport The directed movement of phenylalanine, 2-amino-3-phenylpropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine transport biological_process owl:Class GO:0036418 biolink:NamedThing intrinsic component of mycolate outer membrane The component of the mycolate outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to MOM|intrinsic to mycomembrane|intrinsic to mycolate outer membrane bf 2013-09-05T20:19:04Z cellular_component owl:Class GO:0022008 biolink:NamedThing neurogenesis Generation of cells within the nervous system. tmpzr1t_l9r_go_relaxed.owl nervous system cell generation|neural cell differentiation Wikipedia:Neurogenesis biological_process owl:Class GO:0045747 biolink:NamedThing positive regulation of Notch signaling pathway Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of Notch signalling pathway|positive regulation of N signalling pathway|positive regulation of N signaling pathway|upregulation of Notch signaling pathway|activation of Notch signaling pathway|stimulation of Notch signaling pathway|up regulation of Notch signaling pathway|up-regulation of Notch signaling pathway biological_process owl:Class GO:1905030 biolink:NamedThing voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential Any voltage-gated ion channel activity that is involved in regulation of postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl voltage gated ion channel activity involved in regulation of postsynaptic membrane potential|voltage-gated ion channel activity involved in regulation of post-synaptic membrane potential|voltage-dependent ion channel activity involved in regulation of post-synaptic membrane potential|voltage gated ion channel activity involved in regulation of post-synaptic membrane potential|voltage-dependent ion channel activity involved in regulation of postsynaptic membrane potential dos 2016-03-04T15:51:54Z molecular_function owl:Class GO:2000009 biolink:NamedThing negative regulation of protein localization to cell surface Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to the cell surface. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein localization at cell surface|negative regulation of protein localisation at cell surface jl 2010-08-04T01:43:52Z biological_process owl:Class GO:0034394 biolink:NamedThing protein localization to cell surface A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane. tmpzr1t_l9r_go_relaxed.owl protein localization at cell surface|protein localisation at cell surface biological_process owl:Class GO:0072029 biolink:NamedThing long nephron development The process whose specific outcome is the progression of a long nephron over time, from its formation to the mature structure. Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla. tmpzr1t_l9r_go_relaxed.owl juxtamedullary nephron development mah 2010-01-25T02:49:08Z biological_process owl:Class GO:0002779 biolink:NamedThing antibacterial peptide secretion The regulated release of an antibacterial peptide from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900404 biolink:NamedThing positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of DNA repair. tmpzr1t_l9r_go_relaxed.owl activation of DNA repair by positive regulation of transcription from RNA polymerase II promoter|up-regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter|upregulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter|stimulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter|up regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter mah 2012-04-20T02:45:56Z biological_process owl:Class GO:0110088 biolink:NamedThing hippocampal neuron apoptotic process Any apoptotic process that occurs in a hippocampal neuron. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-13T21:06:23Z biological_process owl:Class GO:0048459 biolink:NamedThing floral whorl structural organization The process that contributes to the act of creating the structural organization of the floral whorl. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl floral whorl structural organisation GO:0048416 biological_process owl:Class GO:1905650 biolink:NamedThing positive regulation of shell calcification Any process that activates or increases the frequency, rate or extent of shell calcification. tmpzr1t_l9r_go_relaxed.owl up-regulation of shell calcification|up regulation of shell calcification|upregulation of shell calcification|activation of shell calcification pga 2016-11-08T16:24:51Z biological_process owl:Class GO:0003168 biolink:NamedThing Purkinje myocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a Purkinje myocyte (also known as cardiac Purkinje fiber cell). These cells are specialized cardiomyocytes that receive signals from the bundle of His and innervate the ventricular cardiac muscle. tmpzr1t_l9r_go_relaxed.owl cardiac Purkinje fiber cell differentiation dph 2009-10-01T02:49:54Z biological_process owl:Class GO:0003165 biolink:NamedThing Purkinje myocyte development The process whose specific outcome is the progression of a Purkinje myocyte over time, from its formation to the mature structure. The Purkinje myocyte (also known as cardiac Purkinje fiber) is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle. tmpzr1t_l9r_go_relaxed.owl cardiac Purkinje fiber development dph 2009-10-01T02:07:50Z biological_process owl:Class GO:0048466 biolink:NamedThing androecium development The process whose specific outcome is the progression of the androecium over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090312 biolink:NamedThing positive regulation of protein deacetylation Any process that increases the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein amino acid deacetylation tb 2010-04-14T01:30:45Z biological_process owl:Class GO:0032765 biolink:NamedThing positive regulation of mast cell cytokine production Any process that activates or increases the frequency, rate, or extent of mast cell cytokine production. tmpzr1t_l9r_go_relaxed.owl upregulation of mast cell cytokine production|stimulation of mast cell cytokine production|up-regulation of mast cell cytokine production|up regulation of mast cell cytokine production|activation of mast cell cytokine production biological_process owl:Class GO:0061642 biolink:NamedThing chemoattraction of axon The process in which a neuron growth cone is directed to a specific target site in response to an attractive chemical signal. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-29T08:21:24Z biological_process owl:Class GO:0032833 biolink:NamedThing negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response Any process that stops, prevents, or reduces the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells as part of an immune response. tmpzr1t_l9r_go_relaxed.owl down-regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation during immune response|down regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|inhibition of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation during immune response|downregulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation during immune response|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development involved in immune response Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0051330 biolink:NamedThing meiotic G1 phase The cell cycle 'gap' phase which is the interval between the completion of DNA segregation by meiosis and the beginning of DNA synthesis. tmpzr1t_l9r_go_relaxed.owl G1 phase of meiotic cell cycle Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:2000156 biolink:NamedThing regulation of retrograde vesicle-mediated transport, Golgi to ER Any process that modulates the frequency, rate or extent of retrograde vesicle-mediated transport, Golgi to ER. tmpzr1t_l9r_go_relaxed.owl regulation of retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum|regulation of cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport|regulation of retrograde (Golgi to ER) transport|regulation of retrograde transport, Golgi to endoplasmic reticulum|regulation of cis-Golgi to rough ER transport|regulation of cis-Golgi to rough ER vesicle-mediated transport|regulation of retrograde transport, Golgi to ER|regulation of cis-Golgi to rough endoplasmic reticulum transport mah 2010-10-04T12:46:35Z biological_process owl:Class GO:1901400 biolink:NamedThing positive regulation of transforming growth factor beta3 activation Any process that activates or increases the frequency, rate or extent of transforming growth factor beta3 activation. tmpzr1t_l9r_go_relaxed.owl upregulation of transforming growth factor beta3 activation|positive regulation of TGF-beta 3 activation|up regulation of transforming growth factor beta3 activation|upregulation of TGF-beta 3 activation|activation of TGFbeta 3 activation|up regulation of TGFbeta 3 activation|activation of transforming growth factor beta3 activation|upregulation of TGFB3 activation|up-regulation of TGF-beta 3 activation|positive regulation of TGFbeta 3 activation|up-regulation of transforming growth factor beta3 activation|upregulation of TGFbeta 3 activation|activation of TGFB3 activation|up-regulation of TGFB3 activation|activation of TGF-beta 3 activation|up-regulation of TGFbeta 3 activation|positive regulation of TGFB3 activation|up regulation of TGFB3 activation|up regulation of TGF-beta 3 activation bf 2012-10-01T10:50:49Z biological_process owl:Class GO:0004912 biolink:NamedThing interleukin-3 receptor activity Combining with interleukin-3 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-3 receptor activity|IL-3R Wikipedia:Interleukin-3_receptor molecular_function owl:Class GO:0097178 biolink:NamedThing ruffle assembly The aggregation, arrangement and bonding together of a set of components to form a ruffle, a projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork. The formation of ruffles (also called membrane ruffling) is thought to be controlled by a group of enzymes known as Rho GTPases, specifically RhoA, Rac1 and cdc42. tmpzr1t_l9r_go_relaxed.owl membrane ruffle formation|membrane ruffling pr 2011-10-16T01:46:09Z biological_process owl:Class GO:0030073 biolink:NamedThing insulin secretion The regulated release of proinsulin from secretory granules accompanied by cleavage of proinsulin to form mature insulin. In vertebrates, insulin is secreted from B granules in the B cells of the vertebrate pancreas and from insulin-producing cells in insects. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/11255#issuecomment-426191045 biological_process owl:Class GO:0061547 biolink:NamedThing glycogen synthase activity, transferring glucose-1-phosphate Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UMP + (1,4)-alpha-D-glucosyl(n)-glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-3781024|Reactome:R-HSA-3780994 dph 2013-07-02T09:59:18Z molecular_function owl:Class GO:0030343 biolink:NamedThing vitamin D3 25-hydroxylase activity Catalysis of the reaction: vitamin D3 + NADPH + H+ + O2 = calcidiol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cholecalciferol 25-hydroxylase activity Reactome:R-HSA-209845|Reactome:R-HSA-5602147|MetaCyc:RXN-9829|RHEA:32903 molecular_function owl:Class GO:0035729 biolink:NamedThing cellular response to hepatocyte growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hepatocyte growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to HGF stimulus bf 2011-03-10T03:04:19Z biological_process owl:Class GO:0036508 biolink:NamedThing protein alpha-1,2-demannosylation The removal of one or more alpha 1,2-linked mannose residues from a mannosylated protein. tmpzr1t_l9r_go_relaxed.owl mannose trimming|glycoprotein mannose trimming Consider also annotating to 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T13:58:50Z biological_process owl:Class GO:0004571 biolink:NamedThing mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in an oligo-mannose oligosaccharide. tmpzr1t_l9r_go_relaxed.owl mannosidase I|exo-alpha-1,2-mannanase activity|mannose-9 processing alpha-mannosidase activity|ManI activity|mannosidase 1A activity|Man9-mannosidase activity|1,2-alpha-mannosyl-oligosaccharide alpha-D-mannohydrolase activity|1,2-alpha-mannosidase|glycoprotein processing mannosidase I|mannosidase 1B activity Reactome:R-HSA-964830|Reactome:R-HSA-901036|Reactome:R-HSA-6782685|Reactome:R-HSA-964737|Reactome:R-HSA-901024|EC:3.2.1.113|Reactome:R-HSA-901074|Reactome:R-HSA-9696807|Reactome:R-HSA-9036008|KEGG_REACTION:R05982|Reactome:R-HSA-964825|Reactome:R-HSA-4793949|Reactome:R-HSA-901039|Reactome:R-HSA-9036012|MetaCyc:3.2.1.113-RXN|KEGG_REACTION:R06722|Reactome:R-HSA-9036011 molecular_function owl:Class GO:0021769 biolink:NamedThing orbitofrontal cortex development The progression of the orbitofrontal cortex over time from its initial formation until its mature state. The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070082 biolink:NamedThing clathrin-sculpted monoamine transport vesicle lumen The volume enclosed by the membrane of the clathrin-sculpted monoamine transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted monoamine constitutive secretory pathway transport vesicle lumen|clathrin sculpted monoamine transport vesicle lumen cellular_component owl:Class GO:0034160 biolink:NamedThing negative regulation of toll-like receptor 8 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 8 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 8 signalling pathway|negative regulation of TLR8 signaling pathway biological_process owl:Class GO:0072232 biolink:NamedThing metanephric proximal convoluted tubule segment 2 development The process whose specific outcome is the progression of the S2 portion of the metanephric proximal convoluted tubule over time, from its formation to the mature structure. The S2 portion of the metanephric proximal tubule is involved in reabsorption of water and sodium chloride. tmpzr1t_l9r_go_relaxed.owl metanephric S2 development mah 2010-03-18T03:39:28Z biological_process owl:Class GO:0071215 biolink:NamedThing cellular response to abscisic acid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T01:04:18Z biological_process owl:Class GO:0042735 biolink:NamedThing protein body A membrane-bounded plant organelle found in the developing endosperm, contains storage proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071023 biolink:NamedThing trans spliceosomal complex A spliceosomal complex that forms during the addition of a specific spliced leader (SL) sequence to the 5'-end of a messenger RNA primary transcript, a process which occurs in a number of eukaryotic organisms, including trypanosomatid protozoans, euglenoids, nematodes, trematodes, and chordates. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0003058 biolink:NamedThing hormonal regulation of the force of heart contraction The process in which the hormones modulates the force of heart muscle contraction. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action. tmpzr1t_l9r_go_relaxed.owl hormonal cardiac inotropy|hormonal regulation of the force of heart muscle contraction biological_process owl:Class GO:1902247 biolink:NamedThing geranylgeranyl diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of geranylgeranyl diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl diphosphate breakdown|geranylgeranyl diphosphate catabolism|geranylgeranyl diphosphate degradation ms 2013-06-20T09:10:09Z biological_process owl:Class GO:0050410 biolink:NamedThing 3-oxolaurate decarboxylase activity Catalysis of the reaction: 3-oxolaurate + H(+) = 2-undecanone + CO(2). tmpzr1t_l9r_go_relaxed.owl beta-ketolaurate decarboxylase activity|3-oxododecanoate carboxy-lyase activity|beta-ketoacyl decarboxylase activity|3-oxododecanoate carboxy-lyase (2-undecanone-forming) RHEA:13385|KEGG_REACTION:R03747|MetaCyc:3-OXOLAURATE-DECARBOXYLASE-RXN|EC:4.1.1.56 molecular_function owl:Class GO:0021528 biolink:NamedThing commissural neuron differentiation in spinal cord The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of commissural neurons. Commissural neurons in both vertebrates and invertebrates transfer information from one side of their bodies to the other through the midline. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050004 biolink:NamedThing isoflavone 7-O-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + isoflavone = UDP + isoflavone 7-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDPglucose:isoflavone 7-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-isoflavone 7-O-glucosyltransferase activity|UDP-glucose:isoflavone 7-O-beta-D-glucosyltransferase activity|UDPglucose:isoflavone 7-O-glucosyltransferase activity|UDPglucose-flavonoid 7-O-glucosyltransferase activity MetaCyc:ISOFLAVONE-7-O-GLUCOSYLTRANSFERASE-RXN|RHEA:56344|EC:2.4.1.170 molecular_function owl:Class GO:1990043 biolink:NamedThing 5' deoxyribonuclease (pyrimidine dimer) activity Catalysis of the endonucleolytic cleavage immediately 5' to pyrimidine dimers to products with 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl pr 2013-02-15T12:16:51Z molecular_function owl:Class GO:2000329 biolink:NamedThing negative regulation of T-helper 17 cell lineage commitment Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell lineage commitment. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-helper 17 cell fate commitment|negative regulation of Th17 cell lineage commitment|negative regulation of Th17 fate commitment mah 2011-01-19T09:31:53Z biological_process owl:Class GO:0030213 biolink:NamedThing hyaluronan biosynthetic process The chemical reactions and pathways resulting in the formation of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl hyaluronan synthesis|hyaluronan formation|hyaluronan anabolism|hyaluronan biosynthesis biological_process owl:Class GO:0047916 biolink:NamedThing GDP-6-deoxy-D-talose 4-dehydrogenase activity Catalysis of the reaction: GDP-6-deoxy-D-talose + NAD(P)+ = GDP-4-dehydro-6-deoxy-D-talose + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl GDP-6-deoxy-D-talose:NAD(P)+ 4-oxidoreductase activity|guanosine diphospho-6-deoxy-D-talose dehydrogenase activity EC:1.1.1.135|MetaCyc:GDP-6-DEOXY-D-TALOSE-4-DEHYDROGENASE-RXN molecular_function owl:Class GO:0102392 biolink:NamedThing decanoate-[HmqF protein] ligase activity Catalysis of the reaction: decanoate + ATP(4-) + an HmqF protein <=> AMP(2-) + diphosphoric acid + a decanoyl-HmqF protein. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13623 molecular_function owl:Class GO:1900616 biolink:NamedThing emericellamide A catabolic process The chemical reactions and pathways resulting in the breakdown of emericellamide A. tmpzr1t_l9r_go_relaxed.owl emericellamide A degradation|emericellamide A breakdown|emericellamide A catabolism di 2012-05-15T08:00:19Z biological_process owl:Class GO:0000436 biolink:NamedThing carbon catabolite activation of transcription from RNA polymerase II promoter Any process involving carbon catabolites that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter by carbon catabolites biological_process owl:Class GO:0030862 biolink:NamedThing positive regulation of polarized epithelial cell differentiation Any process that activates or increases the rate or extent of polarized epithelial cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of polarized epithelial cell differentiation|up regulation of polarized epithelial cell differentiation|activation of polarized epithelial cell differentiation|up-regulation of polarized epithelial cell differentiation|stimulation of polarized epithelial cell differentiation biological_process owl:Class GO:0150153 biolink:NamedThing positive regulation of interleukin-17A production Any process that activates or increases the frequency, rate or extent of interleukin-17A production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-17A biosynthetic process bc 2019-12-11T07:45:44Z biological_process owl:Class GO:0075131 biolink:NamedThing induction by symbiont of host protein kinase-mediated signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of protein kinase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host protein kinase-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by host of symbiont protein kinase-mediated signal transduction ; GO:0075100". biological_process owl:Class GO:0071272 biolink:NamedThing morphine metabolic process The chemical reactions and pathways involving morphine, 17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol. Morphine is a highly potent opiate analgesic psychoactive drug obtained form the opium poppy, Papaver somniferum. tmpzr1t_l9r_go_relaxed.owl morphine metabolism Wikipedia:Morphine mah 2009-12-10T11:11:51Z biological_process owl:Class GO:2000447 biolink:NamedThing negative regulation of macrophage migration inhibitory factor signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of macrophage migration inhibitory factor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of macrophage migration inhibitory factor signalling pathway|negative regulation of MIF signaling pathway bf 2011-03-04T10:38:15Z biological_process owl:Class GO:0031456 biolink:NamedThing glycine betaine biosynthetic process The chemical reactions and pathways resulting in the formation of glycine betaine, N-trimethylglycine. tmpzr1t_l9r_go_relaxed.owl N-trimethylglycine biosynthesis|N-trimethylglycine biosynthetic process|glycine betaine synthesis|glycine betaine anabolism|glycine betaine formation|glycine betaine biosynthesis biological_process owl:Class GO:0080162 biolink:NamedThing intracellular auxin transport The directed movement of auxins within a cell. Auxins are a group of plant hormones that regulates aspects of plant growth. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T03:46:29Z biological_process owl:Class GO:0016154 biolink:NamedThing pyrimidine-nucleoside phosphorylase activity Catalysis of the reaction: pyrimidine nucleoside + phosphate = pyrimidine + alpha-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl Py-NPase activity|pyrimidine-nucleoside:phosphate alpha-D-ribosyltransferase activity EC:2.4.2.2|MetaCyc:PYRIMIDINE-NUCLEOSIDE-PHOSPHORYLASE-RXN molecular_function owl:Class GO:0015113 biolink:NamedThing nitrite transmembrane transporter activity Enables the transfer of nitrite (NO2-) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl nitrite/nitrate porter activity molecular_function owl:Class GO:0062112 biolink:NamedThing fatty acid primary amide biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid primary amide. tmpzr1t_l9r_go_relaxed.owl fatty acid amide biosynthesis|FAPA biosynthetic process|FAPA biosynthesis dph 2019-02-20T12:49:43Z biological_process owl:Class GO:0045504 biolink:NamedThing dynein heavy chain binding Binding to a heavy chain of the dynein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034910 biolink:NamedThing 6-hydroxy-3-succinoylpyridine hydrolase activity Catalysis of the reaction: 6-hydroxy-3-succinoylpyridine + H2O = succinic semialdehyde + 2,5-dihydroxypyridine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1442 molecular_function owl:Class GO:0050741 biolink:NamedThing protein-FMN linkage via O3-riboflavin phosphoryl-L-serine The formation of a protein-FMN linkage via O3-riboflavin phosphoryl-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0350 biological_process owl:Class GO:0002531 biolink:NamedThing regulation of heart contraction involved in acute-phase response Any process that modulates the frequency, rate or extent of heart contraction that contributes to the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein. tmpzr1t_l9r_go_relaxed.owl regulation of heart contraction during acute phase response|regulation of cardiac contraction during acute phase response biological_process owl:Class GO:0039658 biolink:NamedThing TBK1-IKKE-DDX3 complex A protein complex containing TBK1 (TANK-binding kinase 1), IKBKE (I-Kappa-B kinase epsilon/IKKE/IKK-epsilon) and the DEAD box family RNA helicase DDX3. tmpzr1t_l9r_go_relaxed.owl TBK1-IKBKE-DDX3 complex bf 2013-07-03T16:59:27Z cellular_component owl:Class GO:0038008 biolink:NamedThing TRAF-mediated signal transduction The intracellular process in which a signal is passed on to downstream components within the cell via a tumor necrosis factor receptor-associated factor (TRAF). TRAFs are directly or indirectly recruited to the intracellular domains of cell surface receptors, and engage other signaling proteins to transfer the signal from a cell surface receptor to other intracellular signaling components. tmpzr1t_l9r_go_relaxed.owl TRAF signaling|TRAF-mediated intracellular signaling|TRAF-mediated signaling|tumor necrosis factor receptor-associated factor signaling|TRAF-mediated signalling|tumor necrosis factor receptor-associated factor signal transduction bf 2011-06-22T04:01:54Z biological_process owl:Class GO:0032159 biolink:NamedThing septin cap A faint structure formed of septins found at the leading edge of growth in germ tubes and hyphae in fungal cells growing filamentously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032628 biolink:NamedThing interleukin-24 production The appearance of interleukin-24 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-24 secretion|ST16 production|interleukin-24 biosynthetic process|MDA7 production|IL-24 production GO:0072622|GO:0045524 biological_process owl:Class GO:0047394 biolink:NamedThing glycerophosphoinositol inositolphosphodiesterase activity Catalysis of the reaction: H2O + 1-(sn-glycero-3-phospho)-1D-myoinositol = 1D-myo-inositol 1-phosphate + glycerol. tmpzr1t_l9r_go_relaxed.owl D-myo-inositol 1:2-cyclic phosphate 2-phosphohydrolase activity|D-myo-inositol 1,2-cyclic phosphate 2-phosphohydrolase activity|1-D-myo-inositol-1,2-cyclic-phosphate 2-inositolphosphohydrolase activity|1-(sn-glycero-3-phospho)-1D-myo-inositol inositolphosphohydrolase activity|D-inositol 1,2-cyclic phosphate 2-phosphohydrolase activity|inositol-1,2-cyclic-phosphate 2-inositolphosphohydrolase activity|1,2-cyclic-inositol-phosphate phosphodiesterase activity MetaCyc:3.1.4.43-RXN|EC:3.1.4.43|RHEA:14033 molecular_function owl:Class GO:0033741 biolink:NamedThing adenylyl-sulfate reductase (glutathione) activity Catalysis of the reaction: AMP + glutathione disulfide + H(+) + sulfite = 5'-adenylyl sulfate + 2 glutathione. tmpzr1t_l9r_go_relaxed.owl 5'-adenylylsulfate reductase activity|plant-type 5'-adenylylsulfate reductase activity|AMP,sulfite:glutathione-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming) activity|AMP,sulfite:oxidized-glutathione oxidoreductase (adenosine-5'-phosphosulfate-forming) activity RHEA:14141|EC:1.8.4.9|KEGG_REACTION:R05717|MetaCyc:1.8.4.9-RXN molecular_function owl:Class GO:0042732 biolink:NamedThing D-xylose metabolic process The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide. tmpzr1t_l9r_go_relaxed.owl D-xylose metabolism biological_process owl:Class GO:0031455 biolink:NamedThing glycine betaine metabolic process The chemical reactions and pathways involving glycine betaine, N-trimethylglycine. tmpzr1t_l9r_go_relaxed.owl glycine betaine metabolism|N-trimethylglycine metabolic process|N-trimethylglycine metabolism biological_process owl:Class GO:1900565 biolink:NamedThing chanoclavine-I catabolic process The chemical reactions and pathways resulting in the breakdown of chanoclavine-I. tmpzr1t_l9r_go_relaxed.owl chanoclavine-I catabolism|chanoclavine-I degradation|chanoclavine-I breakdown di 2012-05-15T06:30:48Z biological_process owl:Class GO:0102042 biolink:NamedThing dehydroquinate synthase activity Catalysis of the reaction: 2-amino-2,3,7-trideoxy-D-lyxo-hept-6-ulosonic acid + H2O + NAD = 3-dehydroquinate + ammonium + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10032|RHEA:25956|EC:1.4.1.24 molecular_function owl:Class GO:0052873 biolink:NamedThing FMN reductase (NADPH) activity Catalysis of the reaction: FMNH2 + NADP+ = FMN + NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl NADPH2 dehydrogenase (FMN)|FMNH2:NADP+ oxidoreductase activity|NADPH2:FMN oxidoreductase activity|flavin mononucleotide reductase activity|NADPH(2) dehydrogenase (FMN) activity|SsuE|flavine mononucleotide reductase activity|NADPH-FMN reductase activity|NADPH:flavin oxidoreductase activity|NADPH:FMN oxidoreductase activity|NADPH-dependent FMN reductase activity|NADPH(2):FMN oxidoreductase activity|NADPH dehydrogenase (FMN) activity RHEA:21624|Reactome:R-HSA-1222399|EC:1.5.1.38|EC:1.5.1.39|KEGG_REACTION:R05706 molecular_function owl:Class GO:0061421 biolink:NamedThing positive regulation of transcription by oleic acid Any process involving oleic acid that activates or increases the rate of transcription. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-25T10:11:39Z biological_process owl:Class GO:0005969 biolink:NamedThing serine-pyruvate aminotransferase complex An enzyme complex that catalyzes the formation of hydroxypyruvate and alanine from serine and pyruvate. tmpzr1t_l9r_go_relaxed.owl serine-pyruvate aminotransferase, type 1 complex|serine-pyruvate aminotransferase, type 2B complex GO:0005970 cellular_component owl:Class GO:0044595 biolink:NamedThing decaprenyldihydroxybenzoate methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-decaprenyl-4,5-dihydroxybenzoate = S-adenosyl-L-homocysteine + 3-decaprenyl-4-hydroxy-5-methoxybenzoate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9282|RHEA:44492|Reactome:R-HSA-2162193 jl 2012-04-26T04:52:05Z molecular_function owl:Class GO:0010420 biolink:NamedThing 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity Catalysis of the reaction: 3,4-dihydroxy-5-polyprenylbenzoic acid + S-adenosyl-L-methionine = 3-methoxy-4-hydroxy-5-polyprenylbenzoic acid + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl polyprenyldihydroxybenzoate methyltransferase activity MetaCyc:RXN-9281|EC:2.1.1.114|RHEA:44452 sl 2015-10-28T22:12:58Z GO:1990886 molecular_function owl:Class GO:0140140 biolink:NamedThing mitochondrial guanine nucleotide transmembrane transport The process in which a guanine nucleotide is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl pg 2017-11-24T13:26:17Z biological_process owl:Class GO:0005584 biolink:NamedThing collagen type I trimer A collagen trimer containing alpha(I) chains. The most common form of type I collagen is a heterotrimer containing two alpha1(I) chains and one alpha2(I) chain; homotrimers containing three alpha1(I) chains are also found. Type I collagen triple helices associate to form banded fibrils. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Collagen_type_I cellular_component owl:Class GO:1900952 biolink:NamedThing positive regulation of 18-methylnonadec-1-ene biosynthetic process Any process that activates or increases the frequency, rate or extent of 18-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of 18-methylnonadec-1-ene formation|up regulation of 18-methylnonadec-1-ene biosynthetic process|up-regulation of 18-methylnonadec-1-ene synthesis|activation of 18-methylnonadec-1-ene biosynthetic process|up-regulation of 18-methylnonadec-1-ene biosynthetic process|positive regulation of 18-methylnonadec-1-ene biosynthesis|activation of 18-methylnonadec-1-ene synthesis|upregulation of 18-methylnonadec-1-ene anabolism|upregulation of 18-methylnonadec-1-ene biosynthesis|positive regulation of 18-methylnonadec-1-ene anabolism|activation of 18-methylnonadec-1-ene anabolism|activation of 18-methylnonadec-1-ene formation|positive regulation of 18-methylnonadec-1-ene synthesis|up regulation of 18-methylnonadec-1-ene formation|upregulation of 18-methylnonadec-1-ene biosynthetic process|upregulation of 18-methylnonadec-1-ene formation|activation of 18-methylnonadec-1-ene biosynthesis|up-regulation of 18-methylnonadec-1-ene biosynthesis|up-regulation of 18-methylnonadec-1-ene formation|up regulation of 18-methylnonadec-1-ene biosynthesis|up regulation of 18-methylnonadec-1-ene synthesis|up-regulation of 18-methylnonadec-1-ene anabolism|upregulation of 18-methylnonadec-1-ene synthesis|up regulation of 18-methylnonadec-1-ene anabolism tt 2012-06-14T03:24:02Z biological_process owl:Class GO:1900955 biolink:NamedThing positive regulation of 18-methylnonadec-1-ene metabolic process Any process that activates or increases the frequency, rate or extent of 18-methylnonadec-1-ene metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of 18-methylnonadec-1-ene metabolic process|upregulation of 18-methylnonadec-1-ene metabolic process|activation of 18-methylnonadec-1-ene metabolism|up-regulation of 18-methylnonadec-1-ene metabolism|positive regulation of 18-methylnonadec-1-ene metabolism|activation of 18-methylnonadec-1-ene metabolic process|upregulation of 18-methylnonadec-1-ene metabolism|up regulation of 18-methylnonadec-1-ene metabolic process|up regulation of 18-methylnonadec-1-ene metabolism tt 2012-06-14T03:25:44Z biological_process owl:Class GO:0008663 biolink:NamedThing 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 3'-phosphate. tmpzr1t_l9r_go_relaxed.owl 2':3'-cyclic nucleotide phosphodiesterase:3'-nucleotidase activity|2',3'-cyclic AMP 2'-phosphohydrolase activity|2':3'-cyclic phosphodiesterase activity|2',3'-cyclic nucleotidase activity|ribonucleoside 2',3'-cyclic phosphate diesterase activity|cyclic 2',3'-nucleotide 2'-phosphodiesterase activity|nucleoside-2',3'-cyclic-phosphate 3'-nucleotidohydrolase activity|2',3'-cyclic nucleoside monophosphate phosphodiesterase|cyclic 2',3'-nucleotide phosphodiesterase|2',3 '-cyclic AMP phosphodiesterase activity|cyclic phosphodiesterase:3'-nucleotidase activity|2',3'-cyclic nucleotide phosphohydrolase MetaCyc:CYCPHOSDIESTER-RXN|EC:3.1.4.16|RHEA:19621 molecular_function owl:Class GO:0060474 biolink:NamedThing positive regulation of flagellated sperm motility involved in capacitation The process in which the controlled movement of a flagellated sperm cell is initiated as part of the process required for flagellated sperm to reach fertilization competence. tmpzr1t_l9r_go_relaxed.owl positive regulation of sperm motility involved in capacitation biological_process owl:Class GO:0072046 biolink:NamedThing establishment of planar polarity involved in nephron morphogenesis Coordinated organization of groups of cells in the plane of an epithelium that contributes to the shaping of a nephron. tmpzr1t_l9r_go_relaxed.owl establishment of planar cell polarity involved in nephron morphogenesis mah 2010-01-25T03:24:04Z biological_process owl:Class GO:0103103 biolink:NamedThing UDP-glucose: 9-methylthiononylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 9-methylthiononylhydroximate <=> 8-methylthiooctyldesulfoglucosinolate + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4328|EC:2.4.1.195 molecular_function owl:Class GO:0061830 biolink:NamedThing concave side of sperm head The concave part of the late spermatid head or spermatozoon head that forms the ventral portion of the head, particularly in some rodent species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004477 biolink:NamedThing methenyltetrahydrofolate cyclohydrolase activity Catalysis of the reaction: 5,10-methenyltetrahydrofolate + H2O = 10-formyltetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl 5,10-methenyltetrahydrofolate 5-hydrolase (decyclizing)|formyl-methenyl-methylenetetrahydrofolate synthetase (combined)|5,10-methenyl-THF cyclohydrolase activity|citrovorum factor cyclodehydrase activity Reactome:R-HSA-200661|MetaCyc:METHENYLTHFCYCLOHYDRO-RXN|RHEA:23700|Reactome:R-HSA-200740|EC:3.5.4.9|Reactome:R-HSA-6801328 molecular_function owl:Class GO:0052821 biolink:NamedThing DNA-7-methyladenine glycosylase activity Catalysis of the reaction: DNA containing 7-methyladenine + H2O = DNA with abasic site + 7-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 7-methyladenine and the deoxyribose sugar to remove the 7-methyladenine, leaving an abasic site. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.2.2.21-RXN|EC:3.2.2.21 ai 2011-10-28T02:27:39Z molecular_function owl:Class GO:0039557 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF7 activity Any process in which a virus stops, prevents, or reduces a host viral-induced cytoplasmic pattern recognition receptor signaling pathway by reducing the activity of IRF7 (interferon regulatory factor-7). IRF7 a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF7, which allows IRF7 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes. tmpzr1t_l9r_go_relaxed.owl inhibition of host interferon regulatory factor-7 by virus|suppression by virus of host interferon regulatory factor 7 activity|inhibition of host IRF7 by virus|suppression by virus of host IRF7 activity https://github.com/geneontology/go-ontology/issues/21985 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-03-09T04:17:46Z biological_process owl:Class GO:0072545 biolink:NamedThing tyrosine binding Binding to 2-amino-3-(4-hydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl Tyr binding mah 2011-01-19T05:43:55Z molecular_function owl:Class GO:0070093 biolink:NamedThing negative regulation of glucagon secretion Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of glucagon. tmpzr1t_l9r_go_relaxed.owl down regulation of glucagon secretion|down-regulation of glucagon secretion|inhibition of glucagon secretion|downregulation of glucagon secretion biological_process owl:Class GO:1904038 biolink:NamedThing regulation of iron export across plasma membrane Any process that modulates the frequency, rate or extent of export of iron ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl regulation of ferrous iron export|regulation of iron(2+) export kom 2015-03-16T15:36:37Z biological_process owl:Class GO:0003051 biolink:NamedThing angiotensin-mediated drinking behavior The drinking behavior that is mediated by the action of angiotensin in the brain. Angiotensin stimulates the brain centers that control thirst. tmpzr1t_l9r_go_relaxed.owl angiotensin mediated drinking behavior biological_process owl:Class GO:1901536 biolink:NamedThing negative regulation of DNA demethylation Any process that stops, prevents or reduces the frequency, rate or extent of DNA demethylation. tmpzr1t_l9r_go_relaxed.owl downregulation of DNA demethylation|down-regulation of DNA demethylation|inhibition of DNA demethylation|down regulation of DNA demethylation jl 2012-10-24T13:52:54Z biological_process owl:Class GO:0051652 biolink:NamedThing maintenance of chromosome location Any process in which a chromosome is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of chromosome localization biological_process owl:Class GO:0004023 biolink:NamedThing alcohol dehydrogenase activity, metal ion-independent Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+; can proceed in the absence of a metal ion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034522 biolink:NamedThing cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene = 1,2-dihydroxy-8-carboxynaphthalene + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0774 molecular_function owl:Class GO:0030131 biolink:NamedThing clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120234 biolink:NamedThing stereocilium coat A glycocalyx on the the endolymphatic surface of a cochlear hair cell that coats the external surface of each stereocilium and maintains a small distance between adjacent stereocilia in the bundle. tmpzr1t_l9r_go_relaxed.owl auditory hair cell glycocalyx|stereocilium glycocalyx https://github.com/geneontology/go-ontology/issues/19782 krc 2020-07-15T00:56:35Z cellular_component owl:Class GO:0034027 biolink:NamedThing (carboxyethyl)arginine beta-lactam-synthase activity Catalysis of the reaction: N(2)-(2-carboxyethyl)-L-arginine + ATP = AMP + deoxyamidinoproclavaminate + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl L-2-N-(2-carboxyethyl)arginine cyclo-ligase (AMP-forming) activity|L-N2-(2-carboxyethyl)arginine cyclo-ligase (AMP-forming) activity|beta-lactam synthetase activity KEGG_REACTION:R05467|MetaCyc:6.3.3.4-RXN|EC:6.3.3.4|RHEA:23620 molecular_function owl:Class GO:2001241 biolink:NamedThing positive regulation of extrinsic apoptotic signaling pathway in absence of ligand Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway in absence of ligand. tmpzr1t_l9r_go_relaxed.owl positive regulation of extrinsic apoptosis in absence of ligand|positive regulation of dependence receptor signaling pathway|positive regulation of extrinsic apoptotic signalling pathway in absence of ligand pr 2011-11-24T01:33:31Z biological_process owl:Class GO:0047988 biolink:NamedThing hydroxyacid-oxoacid transhydrogenase activity Catalysis of the reaction: (S)-3-hydroxybutanoate + 2-oxoglutarate = acetoacetate + (R)-2-hydroxyglutarate. tmpzr1t_l9r_go_relaxed.owl (S)-3-hydroxybutanoate:2-oxoglutarate oxidoreductase activity|transhydrogenase, hydroxy acid-oxo acid Reactome:R-HSA-880002|EC:1.1.99.24|MetaCyc:HYDROXYACID-OXOACID-TRANSHYDROGENASE-RXN|Reactome:R-HSA-880033 molecular_function owl:Class GO:0051174 biolink:NamedThing regulation of phosphorus metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. tmpzr1t_l9r_go_relaxed.owl regulation of phosphorus metabolism biological_process owl:Class GO:0050230 biolink:NamedThing purine imidazole-ring cyclase activity Catalysis of the reaction: DNA 4,6-diamino-5-formamidopyrimidine = DNA adenine + H2O. tmpzr1t_l9r_go_relaxed.owl DNA-4,6-diamino-5-formamidopyrimidine C8-N9-lyase (cyclizing; DNA-adenine-forming)|DNA-4,6-diamino-5-formamidopyrimidine 8-C,9-N-lyase (cyclizing; DNA-adenine-forming)|DNA-4,6-diamino-5-formamidopyrimidine 8-C,9-N-lyase (cyclizing) MetaCyc:PURINE-IMIDAZOLE-RING-CYCLASE-RXN|EC:4.3.2.4 molecular_function owl:Class GO:0071039 biolink:NamedThing nuclear polyadenylation-dependent CUT catabolic process The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a cryptic unstable transcript (CUT), initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target CUT. tmpzr1t_l9r_go_relaxed.owl nuclear poly(A)-dependent CUT catabolic process krc 2009-07-29T01:10:34Z biological_process owl:Class GO:0071034 biolink:NamedThing CUT catabolic process The chemical reactions and pathways resulting in the breakdown of cryptic unstable transcripts (CUTs). tmpzr1t_l9r_go_relaxed.owl cryptic unstable transcript catabolic process krc 2009-07-29T12:38:04Z biological_process owl:Class GO:0061508 biolink:NamedThing CDP phosphorylation The process of introducing a phosphate group into CDP to produce a CTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-02-21T13:38:11Z biological_process owl:Class GO:1905045 biolink:NamedThing negative regulation of Schwann cell proliferation involved in axon regeneration Any process that stops, prevents or reduces the frequency, rate or extent of Schwann cell proliferation involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl down-regulation of Schwann cell proliferation involved in axon regeneration|downregulation of Schwann cell proliferation involved in axon regeneration|down regulation of Schwann cell proliferation involved in axon regeneration|inhibition of Schwann cell proliferation involved in axon regeneration rph 2016-03-11T14:47:45Z biological_process owl:Class GO:0044293 biolink:NamedThing dendriole Small dendrites that makes up a brush structure found as the terminal specialization of a dendrite of a unipolar brush cell (UBC). tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao28175134|NIF_Subcellular:sao295057932 jl 2010-02-04T03:32:02Z cellular_component owl:Class GO:1904411 biolink:NamedThing positive regulation of secretory granule organization Any process that activates or increases the frequency, rate or extent of secretory granule organization. tmpzr1t_l9r_go_relaxed.owl upregulation of secretory granule organization|up-regulation of secretory granule organization|up-regulation of secretory granule organization and biogenesis|upregulation of secretory granule organisation|activation of secretory granule organization and biogenesis|up regulation of secretory granule organisation|upregulation of secretory granule organization and biogenesis|activation of secretory granule organization|up regulation of secretory granule organization and biogenesis|activation of secretory granule organisation|up regulation of secretory granule organization|up-regulation of secretory granule organisation|positive regulation of secretory granule organization and biogenesis|positive regulation of secretory granule organisation sl 2015-06-25T19:40:55Z biological_process owl:Class GO:0006507 biolink:NamedThing GPI anchor release The GPI anchor metabolic process that results in enzymatic cleavage of the anchor, releasing an anchored protein from the membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032717 biolink:NamedThing negative regulation of interleukin-8 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-8 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-8 secretion|negative regulation of IL-8 production|down regulation of interleukin-8 production|down-regulation of interleukin-8 production|inhibition of interleukin-8 production|negative regulation of interleukin-8 biosynthetic process|downregulation of interleukin-8 production GO:0045415|GO:2000483 biological_process owl:Class GO:0001666 biolink:NamedThing response to hypoxia Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. tmpzr1t_l9r_go_relaxed.owl response to lowered oxygen tension|response to sustained hypoxia|response to hypoxic stress|response to intermittent hypoxia Note that this term should not be confused with 'response to anoxia ; GO:0034059'. Note that in laboratory studies, hypoxia is typically studied at O2 concentrations ranging from 0.1 - 5%. biological_process owl:Class GO:0097329 biolink:NamedThing response to antimetabolite Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antimetabolite stimulus. An antimetabolite is a substance which is structurally similar to a metabolite but which competes with it or replaces it, and so prevents or reduces its normal utilization. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:52:01Z biological_process owl:Class GO:0060166 biolink:NamedThing olfactory pit development The biological process whose specific outcome is the progression of the olfactory pit from an initial condition to its mature state. This process begins with the formation of the olfactory pit, which is an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901511 biolink:NamedThing (-)-microperfuranone catabolic process The chemical reactions and pathways resulting in the breakdown of (-)-microperfuranone. tmpzr1t_l9r_go_relaxed.owl (-)-microperfuranone degradation|(-)-microperfuranone catabolism|(-)-microperfuranone breakdown di 2012-10-18T06:54:14Z biological_process owl:Class GO:1901510 biolink:NamedThing (-)-microperfuranone metabolic process The chemical reactions and pathways involving (-)-microperfuranone. tmpzr1t_l9r_go_relaxed.owl (-)-microperfuranone metabolism di 2012-10-18T06:54:10Z biological_process owl:Class GO:0060959 biolink:NamedThing cardiac neuron development The process whose specific outcome is the progression of a cardiac neuron over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl heart neuron development dph 2009-09-30T10:14:56Z biological_process owl:Class GO:0060093 biolink:NamedThing negative regulation of synaptic transmission, glycinergic Any process that stops or decreases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine. tmpzr1t_l9r_go_relaxed.owl negative regulation of glycinergic synaptic transmission biological_process owl:Class GO:1902707 biolink:NamedThing hexose catabolic process to ethanol The chemical reactions and pathways resulting in the breakdown of hexose to ethanol. tmpzr1t_l9r_go_relaxed.owl hexose breakdown to ethanol|hexose degradation to ethanol|hexose catabolism to ethanol|solventogenesis tb 2014-02-19T21:33:08Z GO:1990282 biological_process owl:Class GO:0047695 biolink:NamedThing benzoin aldolase activity Catalysis of the reaction: benzoin = 2 benzaldehyde. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-1,2-diphenylethanone benzaldehyde-lyase 2-hydroxy-1,2-diphenylethanone benzaldehyde-lyase activity|diphenylethanone benzaldehyde-lyase activity|2-hydroxy-1,2-diphenylethanone benzaldehyde-lyase 2-hydroxy-1,2-diphenylethanone benzaldehyde-lyase (benzaldehyde-forming)|2-hydroxy-1,2-diphenylethanone benzaldehyde-lyase 2-hydroxy-1,2- activity|benzaldehyde lyase activity MetaCyc:BENZOIN-ALDOLASE-RXN|EC:4.1.2.38|RHEA:21460|KEGG_REACTION:R00027 molecular_function owl:Class GO:1990927 biolink:NamedThing calcium ion regulated lysosome exocytosis The process of secretion by a cell that results in the release of intracellular molecules contained within a lysosome by fusion of the vesicle with the plasma membrane of a cell, induced by a rise in cytosolic calcium-ion levels. tmpzr1t_l9r_go_relaxed.owl sp 2016-02-16T14:19:44Z biological_process owl:Class GO:0010451 biolink:NamedThing floral meristem growth The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014899 biolink:NamedThing cardiac muscle atrophy A process, occurring in the heart, in which a decrease in cell mass and then in heart size occurs due to shrinking of the individual cells. The shrinkage is caused by protein degradation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014891 biolink:NamedThing striated muscle atrophy A process, occurring in striated muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036080 biolink:NamedThing purine nucleotide-sugar transmembrane transporter activity Enables the transfer of a purine nucleotide-sugar from one side of a membrane to the other. Purine nucleotide-sugars are purine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-19T03:29:06Z molecular_function owl:Class GO:0005338 biolink:NamedThing nucleotide-sugar transmembrane transporter activity Enables the transfer of a nucleotide-sugar from one side of a membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-744230|Reactome:R-HSA-744231 GO:0005339 molecular_function owl:Class GO:1900089 biolink:NamedThing negative regulation of inositol biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of myo-inositol biosynthesis|down-regulation of vitamin Bh biosynthetic process|downregulation of inositol biosynthetic process|downregulation of myo-inositol biosynthesis|downregulation of inositol synthesis|inhibition of myo-inositol biosynthetic process|down-regulation of inositol biosynthetic process|downregulation of inositol anabolism|downregulation of vitamin Bh biosynthetic process|downregulation of inositol formation|inhibition of inositol biosynthetic process|down regulation of inositol synthesis|down regulation of inositol biosynthesis|inhibition of inositol biosynthesis|down regulation of inositol anabolism|inhibition of vitamin Bh biosynthetic process|down regulation of vitamin Bh biosynthetic process|downregulation of vitamin Bh biosynthesis|down-regulation of inositol anabolism|down-regulation of vitamin Bh biosynthesis|down regulation of vitamin Bh biosynthesis|downregulation of inositol biosynthesis|negative regulation of vitamin Bh biosynthetic process|inhibition of myo-inositol biosynthesis|negative regulation of inositol anabolism|inhibition of inositol anabolism|down regulation of inositol biosynthetic process|down-regulation of inositol formation|downregulation of myo-inositol biosynthetic process|negative regulation of myo-inositol biosynthetic process|negative regulation of inositol formation|inhibition of vitamin Bh biosynthesis|down regulation of inositol formation|negative regulation of vitamin Bh biosynthesis|down-regulation of myo-inositol biosynthetic process|down regulation of myo-inositol biosynthetic process|inhibition of inositol formation|inhibition of inositol synthesis|negative regulation of inositol synthesis|down-regulation of inositol biosynthesis|down-regulation of myo-inositol biosynthesis|negative regulation of myo-inositol biosynthesis|negative regulation of inositol biosynthesis|down-regulation of inositol synthesis dhl 2012-02-08T06:27:28Z biological_process owl:Class GO:1901892 biolink:NamedThing negative regulation of cell septum assembly Any process that stops, prevents or reduces the frequency, rate or extent of cell septum assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of cell septum assembly|down regulation of cell septum assembly|down-regulation of cell septum assembly|downregulation of cell septum assembly tb 2013-02-06T20:14:45Z biological_process owl:Class GO:1990349 biolink:NamedThing gap junction-mediated intercellular transport The movement of substances between cells via gap junctions. A gap junction is a fine cytoplasmic channel, found in animal cells, that connects the cytoplasm of one cell to that of an adjacent cell, allowing ions and other molecules to pass freely between the two cells. tmpzr1t_l9r_go_relaxed.owl hjd 2014-03-25T18:05:44Z biological_process owl:Class GO:0033195 biolink:NamedThing response to alkyl hydroperoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkyl hydroperoxide stimulus. Alkyl hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH, where the substituent is an alkyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042297 biolink:NamedThing vocal learning A behavioral process whose outcome is a relatively long-lasting behavioral change whereby an organism modifies innate vocalizations to imitate sounds produced by others. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Vocal_learning Examples include language learning by human infants and song learning in zebra finches. biological_process owl:Class GO:0031223 biolink:NamedThing auditory behavior The behavior of an organism in response to a sound. tmpzr1t_l9r_go_relaxed.owl auditory behaviour|behavioral response to sound|behavioural response to sound biological_process owl:Class GO:0106215 biolink:NamedThing negative regulation of vesicle fusion with Golgi apparatus Any process that stops, prevents or reduces the frequency, rate or extent of vesicle fustion with Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl hjd 2019-06-27T15:17:17Z biological_process owl:Class GO:0038041 biolink:NamedThing cross-receptor inhibition within G protein-coupled receptor heterodimer Inhibition of one protomer of a G protein-coupled receptor (GPCR) heterodimer by the associated subunit. For example, agonist activation of one cytokine receptor can prevent activation of its associated cytokine receptor subunit. tmpzr1t_l9r_go_relaxed.owl cross-receptor inhibition within G-protein coupled receptor heterodimer bf 2011-11-02T04:52:24Z biological_process owl:Class GO:1903546 biolink:NamedThing protein localization to photoreceptor outer segment A process in which a protein is transported to, or maintained in, a location within a photoreceptor outer segment. tmpzr1t_l9r_go_relaxed.owl protein localization in photoreceptor outer segment|protein localisation in photoreceptor outer segment|protein localisation to photoreceptor outer segment krc 2014-10-17T21:14:11Z biological_process owl:Class GO:0047368 biolink:NamedThing UDP-N-acetylgalactosamine-4-sulfate sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + UDP-N-acetyl-D-galactosamine 4-sulfate = adenosine 3',5'-diphosphate + H(+) + UDP-N-acetyl-D-galactosamine 4,6-disulfate. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylgalactosamine 4-sulfate sulfotransferase activity|3'-phosphoadenylyl-sulfate:UDP-N-acetyl-D-galactosamine-4-sulfate 6-sulfotransferase activity|uridine diphospho-N-acetylgalactosamine 4-sulfate sulfotransferase activity|UDP-N-acetylgalactosamine-4-sulphate sulphotransferase activity EC:2.8.2.7|KEGG_REACTION:R04476|MetaCyc:2.8.2.7-RXN|RHEA:14337 molecular_function owl:Class GO:2001096 biolink:NamedThing cellotriose transport The directed movement of a cellotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:06:27Z biological_process owl:Class GO:0097603 biolink:NamedThing temperature-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens in response to a temperature stimulus (e.g. exposure to a temperature range different than the optimal temperature for that organism). tmpzr1t_l9r_go_relaxed.owl temperature-dependent ion channel activity|heat-activated ion channel activity|temperature-activated ion channel activity|temperature gated ion channel activity pr 2014-05-12T13:10:42Z molecular_function owl:Class GO:0004097 biolink:NamedThing catechol oxidase activity Catalysis of the reaction: 2 L-dopa + O2 = 2 H2O + 2 L-dopaquinone. This reaction catalyzes exclusively the oxidation of catechols (i.e., o-diphenols) to the corresponding o-quinones. tmpzr1t_l9r_go_relaxed.owl o-diphenol oxidoreductase|pyrocatechol oxidase|L-DOPA monooxygenase activity|diphenol oxidase activity|dopamine monooxygenase activity|phenolase activity|o-diphenolase activity|polyphenol oxidase activity|L-dopa oxidase activity|catecholase|tyrosinase activity https://github.com/geneontology/go-ontology/issues/21024 EC:1.10.3.1|RHEA:21632|MetaCyc:RXN-13061|MetaCyc:CATECHOL-OXIDASE-RXN GO:0004097 describes oxidation of catechols (i.e., o-diphenols) to the corresponding o-quinones. For monooxygenation of monophenols, consider instead the term 'monophenol monooxygenase activity ; GO:0004503'. GO:0036263|GO:0036264|GO:0102316 molecular_function owl:Class GO:0090164 biolink:NamedThing asymmetric Golgi ribbon formation The asymmetric formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae that contributes to the establishment of epithelial cell polarity. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T09:02:45Z biological_process owl:Class GO:0090161 biolink:NamedThing Golgi ribbon formation The formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T08:38:14Z biological_process owl:Class GO:0035320 biolink:NamedThing imaginal disc-derived wing hair site selection Determination of the site in the cell of an imaginal disc-derived wing at which a prehair initiates outgrowth. Restriction of prehair initiation to the distalmost part of a cell is essential to ensure that each wing epithelial cell produces one adult hair that points distally. tmpzr1t_l9r_go_relaxed.owl wing hair site selection|prehair localization biological_process owl:Class GO:0060355 biolink:NamedThing positive regulation of cell adhesion molecule production Any process that increases the rate, frequency or extent of cell adhesion molecule production. Cell adhesion molecule production is the appearance of a cell adhesion molecule as a result of its biosynthesis or a decrease in its catabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140715 biolink:NamedThing serine-tRNA ligase complex A heterodimeric enzyme complex that catalyzes the ligation of serine to tRNA(Ser), forming L-seryl-tRNA(Ser). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22145 pg 2021-09-15T12:38:41Z cellular_component owl:Class GO:0060203 biolink:NamedThing clathrin-sculpted glutamate transport vesicle membrane The lipid bilayer surrounding a clathrin-sculpted glutamate transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted glutamate constitutive secretory pathway transport vesicle membrane cellular_component owl:Class GO:0047873 biolink:NamedThing dolichyl-phosphatase activity Catalysis of the reaction: dolichyl phosphate + H2O = dolichol + phosphate. tmpzr1t_l9r_go_relaxed.owl dolichyl monophosphate phosphatase activity|Dol-P-P phosphohydrolase activity|dolichol monophosphatase activity|polyprenylphosphate phosphatase activity|dolichol phosphate phosphatase activity|dolichyl pyrophosphate phosphatase activity|polyisoprenyl phosphate phosphatase activity|dolichyl-phosphate phosphohydrolase activity|dolichyl phosphate phosphatase activity|dolichol phosphatase activity|Dol-P phosphatase activity RHEA:13797|MetaCyc:DOLICHYL-PHOSPHATASE-RXN|EC:3.1.3.51 molecular_function owl:Class GO:0050206 biolink:NamedThing oximinotransferase activity Catalysis of the reaction: 2-(hydroxyimino)propanoate + acetone = acetone oxime + pyruvate. tmpzr1t_l9r_go_relaxed.owl transoximase activity|oximase activity|pyruvate-acetone oximinotransferase activity|oximinotransaminase activity|transoximinase activity EC:2.6.3.1|MetaCyc:OXIMINOTRANSFERASE-RXN|KEGG_REACTION:R03796|RHEA:11624 GO:0016770 molecular_function owl:Class GO:0046309 biolink:NamedThing 1,3-dichloro-2-propanol biosynthetic process The chemical reactions and pathways resulting in the formation of 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic. tmpzr1t_l9r_go_relaxed.owl 1,3-dichloro-2-propanol anabolism|1,3-dichloro-2-propanol synthesis|1,3-dichloro-2-propanol biosynthesis|1,3-dichloro-2-propanol formation biological_process owl:Class GO:0015928 biolink:NamedThing fucosidase activity Catalysis of the hydrolysis of fucosyl compounds, substances containing a group derived from a cyclic form of fucose or a fucose derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990423 biolink:NamedThing RZZ complex A kinetochore component required for both meiotic and mitotic spindle assembly checkpoints. tmpzr1t_l9r_go_relaxed.owl Rod-Zwilch-Zw10 complex Example annotations for this term would be D. melanogaster mit(1)15 (Q9W4X9), rod and zwilch (Q9VA00). jl 2014-07-23T11:16:42Z cellular_component owl:Class GO:0038168 biolink:NamedThing epidermal growth factor receptor signaling pathway via I-kappaB kinase/NF-kappaB cascade The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to one of its physiological ligands, where the signal is passed on within the cell via I-kappaB-kinase (IKK)-dependent activation of the transcription factor NF-kappaB. tmpzr1t_l9r_go_relaxed.owl EGFR signaling pathway via IKK/NF-kappaB cascade|EGFR signaling pathway via IKK-dependent activation of NF-kappaB bf 2012-05-15T12:01:09Z biological_process owl:Class GO:0071727 biolink:NamedThing cellular response to triacyl bacterial lipopeptide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triacylated bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to triacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. mah 2010-03-17T02:17:49Z biological_process owl:Class GO:0071725 biolink:NamedThing response to triacyl bacterial lipopeptide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triacylated bacterial lipopeptide stimulus. tmpzr1t_l9r_go_relaxed.owl response to triacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. mah 2010-03-17T02:16:40Z biological_process owl:Class GO:1902171 biolink:NamedThing regulation of tocopherol cyclase activity Any process that modulates the frequency, rate or extent of tocopherol cyclase activity. tmpzr1t_l9r_go_relaxed.owl tb 2013-05-25T00:41:14Z biological_process owl:Class GO:0099527 biolink:NamedThing postsynapse to nucleus signaling pathway A series of molecular signals that conveys information from the postsynapse to the nucleus via cytoskeletal transport of a protein from a postsynapse to the component to the nucleus where it affects biochemical processes that occur in the nucleus (e.g DNA transcription, mRNA splicing, or DNA/histone modifications). tmpzr1t_l9r_go_relaxed.owl postsynaptic signaling to nucleus biological_process owl:Class GO:1901287 biolink:NamedThing iron-sulfur-molybdenum cofactor catabolic process The chemical reactions and pathways resulting in the breakdown of iron-sulfur-molybdenum cofactor. tmpzr1t_l9r_go_relaxed.owl FeMo-co degradation|iron-molybdenum catabolic process|iron-molybdenum degradation|FeMo-co catabolism|FeMo-co breakdown|FeMo-co catabolic process|iron-sulfur-molybdenum cofactor catabolism|iron-sulfur-molybdenum cofactor degradation|iron-molybdenum catabolism|iron-sulfur-molybdenum cofactor breakdown|iron-molybdenum breakdown yaf 2012-08-17T15:39:36Z biological_process owl:Class GO:1901286 biolink:NamedThing iron-sulfur-molybdenum cofactor metabolic process The chemical reactions and pathways involving iron-sulfur-molybdenum cofactor. tmpzr1t_l9r_go_relaxed.owl FeMo-co metabolic process|iron-molybdenum cofactor metabolism|iron-molybdenum cofactor metabolic process|FeMo-co metabolism|iron-sulfur-molybdenum cofactor metabolism yaf 2012-08-17T15:39:14Z biological_process owl:Class GO:0097490 biolink:NamedThing sympathetic neuron projection extension Long distance growth of a single sympathetic neuron projection involved in cellular development. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite. tmpzr1t_l9r_go_relaxed.owl sympathetic neuronal cell projection extension|sympathetic neurite extension|sympathetic neuron process extension|sympathetic neuron protrusion extension pr 2013-07-10T11:47:53Z biological_process owl:Class GO:1990138 biolink:NamedThing neuron projection extension Long distance growth of a single neuron projection involved in cellular development. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite. tmpzr1t_l9r_go_relaxed.owl neuron protrusion extension|neuronal cell projection extension|neurite extension|neuron process extension pr 2013-07-08T08:40:45Z biological_process owl:Class GO:0018973 biolink:NamedThing trinitrotoluene metabolic process The chemical reactions and pathways involving trinitrotoluene, a methylated benzene molecule with three NO2 groups attached to it. This includes the explosive TNT, 1-methyl-2,4,6-trinitrobenzene. tmpzr1t_l9r_go_relaxed.owl trinitrotoluene metabolism UM-BBD_pathwayID:tnt biological_process owl:Class GO:0010585 biolink:NamedThing glutamine secretion The controlled release of glutamine by a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900514 biolink:NamedThing positive regulation of starch utilization system complex assembly Any process that activates or increases the frequency, rate or extent of starch utilization system complex assembly. tmpzr1t_l9r_go_relaxed.owl activation of assembly of starch utilization system complex|activation of SUS complex assembly|up regulation of starch utilization system complex assembly|positive regulation of assembly of starch utilization system complex|up-regulation of SUS complex assembly|upregulation of SUS complex assembly|up-regulation of assembly of starch utilization system complex|activation of starch utilization system complex assembly|up regulation of assembly of starch utilization system complex|up-regulation of starch utilization system complex assembly|up regulation of SUS complex assembly|positive regulation of SUS complex assembly|upregulation of assembly of starch utilization system complex|upregulation of starch utilization system complex assembly tt 2012-05-02T04:07:04Z biological_process owl:Class GO:1990784 biolink:NamedThing response to dsDNA Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus. tmpzr1t_l9r_go_relaxed.owl response to double-stranded DNA sl 2015-06-24T17:54:13Z biological_process owl:Class GO:0033232 biolink:NamedThing ABC-type D-methionine transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-methionine(out/in) = ADP + phosphate + D-methionine(in/out). tmpzr1t_l9r_go_relaxed.owl D-methionine-transporting ATPase activity|ATP-dependent D-methionine transporter activity|D-methionine transmembrane transporter activity|methionine transmembrane-transporting ATPase activity|D-methionine transporter activity|D-methionine-importing ATPase activity|D-methionine exporter|D-methionine importer|D-methionine-exporting ATPase activity|ATPase-coupled methionine transmembrane transporter activity|ATP-dependent methionine transmembrane transporter activity|ATPase-coupled D-methionine transporter activity EC:7.4.2.11|RHEA:29779 jl 2012-08-07T15:59:50Z GO:0032522|GO:0032521|GO:0048474|GO:1901243 molecular_function owl:Class GO:0071699 biolink:NamedThing olfactory placode morphogenesis The process in which the anatomical structures of the olfactory placode are generated and organized. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T12:45:45Z biological_process owl:Class GO:0047367 biolink:NamedThing quercetin-3,3'-bissulfate 7-sulfotransferase activity Catalysis of the reaction: quercetin 3,3'-bissulfate + 3'-phosphoadenosine 5'-phosphosulfate = quercetin 3,3',7-trissulfate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl flavonol 7-sulfotransferase activity|PAPS:flavonol 3,3'/3,4'-disulfate 7-sulfotransferase activity|3'-phosphoadenylyl-sulfate:quercetin-3,3'-bissulfate 7-sulfotransferase activity|7-sulfotransferase activity|quercetin-3,3'-bissulphate 7-sulphotransferase activity RHEA:21860|EC:2.8.2.28|MetaCyc:2.8.2.28-RXN molecular_function owl:Class GO:0046256 biolink:NamedThing 2,4,6-trinitrotoluene catabolic process The chemical reactions and pathways resulting in the breakdown of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid. tmpzr1t_l9r_go_relaxed.owl 2,4,6-trinitrotoluene degradation|2,4,6-trinitrotoluene breakdown|2,4,6-trinitrotoluene catabolism biological_process owl:Class GO:0018974 biolink:NamedThing 2,4,6-trinitrotoluene metabolic process The chemical reactions and pathways involving 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid. It is prepared from toluene treated with concentrated sulfuric and nitric acids and is used in shells, bombs, and blasting explosives. tmpzr1t_l9r_go_relaxed.owl TNT metabolism|TNT metabolic process|2,4,6-trinitrotoluene metabolism biological_process owl:Class GO:0046443 biolink:NamedThing FAD metabolic process The chemical reactions and pathways involving FAD, the oxidized form of flavin adenine dinucleotide. tmpzr1t_l9r_go_relaxed.owl oxidized flavin adenine dinucleotide metabolic process|oxidized flavin-adenine dinucleotide metabolism|oxidized flavin-adenine dinucleotide metabolic process|FAD metabolism|oxidized flavin adenine dinucleotide metabolism biological_process owl:Class GO:0048825 biolink:NamedThing cotyledon development The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903017 biolink:NamedThing positive regulation of exo-alpha-sialidase activity Any process that activates or increases the frequency, rate or extent of exo-alpha-sialidase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of sialidase activity|up-regulation of exo-alpha-sialidase activity|up-regulation of neuraminidase activity|up regulation of exo-alpha-sialidase activity|positive regulation of alpha-neuraminidase activity|upregulation of acetylneuraminidase activity|up-regulation of N-acylneuraminate glycohydrolase activity|upregulation of neuraminidase activity|positive regulation of acetylneuraminidase activity|up regulation of acetylneuraminidase activity|activation of alpha-neuraminidase activity|positive regulation of neuraminidase activity|positive regulation of N-acylneuraminate glycohydrolase activity|upregulation of exo-alpha-sialidase activity|up regulation of acetylneuraminyl hydrolase activity|positive regulation of acetylneuraminyl hydrolase activity|up regulation of neuraminidase activity|activation of neuraminidase activity|up regulation of N-acylneuraminate glycohydrolase activity|activation of acetylneuraminidase activity|upregulation of alpha-neuraminidase activity|up-regulation of sialidase activity|up-regulation of acetylneuraminyl hydrolase activity|upregulation of N-acylneuraminate glycohydrolase activity|up-regulation of alpha-neuraminidase activity|activation of acetylneuraminyl hydrolase activity|upregulation of sialidase activity|up regulation of sialidase activity|up regulation of alpha-neuraminidase activity|upregulation of acetylneuraminyl hydrolase activity|activation of exo-alpha-sialidase activity|activation of sialidase activity|up-regulation of acetylneuraminidase activity|activation of N-acylneuraminate glycohydrolase activity human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) demonstrated in Figure 4A PMID:23544079, (IDA) rl 2014-05-14T18:15:23Z biological_process owl:Class GO:0033619 biolink:NamedThing membrane protein proteolysis The proteolytic cleavage of a transmembrane protein leading to the release of its intracellular or ecto-domains. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038119 biolink:NamedThing CCL19-activated CCR7 signaling pathway A series of molecular signals initiated by the binding of the C-C chemokine CCL19 to a C-C chemokine type 7 receptor (CCR7) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL19-activated CCR7 signalling pathway bf 2012-03-22T11:47:24Z biological_process owl:Class GO:0047020 biolink:NamedThing 15-hydroxyprostaglandin-D dehydrogenase (NADP+) activity Catalysis of the reaction: NADP+ + (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate = NADPH + H+ + (5Z,13E)-9-alpha-hydroxy-11,15-dioxoprosta-5,13-dienoate. tmpzr1t_l9r_go_relaxed.owl NADP-specific 15-hydroxyprostaglandin dehydrogenase|NADP-dependent 15-hydroxyprostaglandin dehydrogenase|prostaglandin D2 dehydrogenase activity|NADP-linked prostaglandin D2 dehydrogenase activity|15-hydroxyprostaglandin dehydrogenase (NADP)|prostaglandin-D 15-dehydrogenase (NADP)|(5Z,13E)-(15S)-9alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate:NADP+ 15-oxidoreductase activity|prostaglandin-D 15-dehydrogenase (NADP(+)) activity|15-hydroxy PGD2 dehydrogenase activity|NADP-linked 15-hydroxyprostaglandin dehydrogenase|dehydrogenase, 15-hydroxyprostaglandin (nicotinamide adenine dinucleotide phosphate)|NADP-PGD2 dehydrogenase activity|prostaglandin-D 15-dehydrogenase (NADP+) activity|dehydrogenase, prostaglandin D2 EC:1.1.1.196|RHEA:20744|MetaCyc:1.1.1.196-RXN molecular_function owl:Class GO:1904383 biolink:NamedThing response to sodium phosphate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T16:55:07Z biological_process owl:Class GO:1902074 biolink:NamedThing response to salt Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus. tmpzr1t_l9r_go_relaxed.owl response to salinity mls 2013-04-22T15:41:57Z biological_process owl:Class GO:0102513 biolink:NamedThing delphinidin 3-O-glucoside 5-O-glucosyltransferase (vanilloyl-glucose dependent) activity Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose <=> delphinidin 3,7-di O-beta-D-glucoside + vanillate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14442 molecular_function owl:Class GO:0043453 biolink:NamedThing alkyne biosynthetic process The chemical reactions and pathways resulting in the formation of an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2. tmpzr1t_l9r_go_relaxed.owl alkyne biosynthesis|alkyne anabolism|alkyne synthesis|alkyne formation biological_process owl:Class GO:0120247 biolink:NamedThing acetylenic compound biosynthetic process The chemical reactions and pathways resulting in the formation of an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C). tmpzr1t_l9r_go_relaxed.owl alkyne substituted compound anabolism|alkyne substituted compound synthesis|alkyne substituted compound biosynthetic process|alkyne substituted compound biosynthesis|alkyne substituted compound anabolic process https://github.com/geneontology/go-ontology/issues/19842 krc 2020-08-18T01:02:36Z biological_process owl:Class GO:0019501 biolink:NamedThing arsonoacetate catabolic process The chemical reactions and pathways resulting in the breakdown of arsonoacetate, a synthetic, organic compound containing a single arsenic atom. tmpzr1t_l9r_go_relaxed.owl arsonoacetate degradation|arsonoacetate breakdown|arsonoacetate catabolism MetaCyc:P482-PWY biological_process owl:Class GO:0002233 biolink:NamedThing leukocyte chemotaxis involved in immune response The movement of an immune cell in response to an external stimulus a part of an immune response. tmpzr1t_l9r_go_relaxed.owl leucocyte chemotaxis during immune response|immune cell chemotaxis during immune response biological_process owl:Class GO:2000869 biolink:NamedThing positive regulation of estrone secretion Any process that activates or increases the frequency, rate or extent of estrone secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion|positive regulation of folliculin secretion bf 2011-07-26T08:50:19Z biological_process owl:Class GO:0021827 biolink:NamedThing postnatal olfactory bulb interneuron migration The migration of olfactory bulb interneuron precursors in the cerebral cortex that occurs after birth. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031307 biolink:NamedThing integral component of mitochondrial outer membrane The component of the mitochondrial outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to mitochondrial outer membrane cellular_component owl:Class GO:0044693 biolink:NamedThing trehalose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: trehalose(out) + H+(out) = trehalose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl trehalose:hydrogen symporter activity jl 2012-08-15T15:19:27Z molecular_function owl:Class GO:0120138 biolink:NamedThing regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Any process that modulates the frequency, rate or extent of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T16:15:08Z biological_process owl:Class GO:0047621 biolink:NamedThing acylpyruvate hydrolase activity Catalysis of the reaction: a 3-acylpyruvate + H2O = a carboxylate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 3-acylpyruvate acylhydrolase activity RHEA:19009|EC:3.7.1.5|UM-BBD_reactionID:r1401|MetaCyc:ACYLPYRUVATE-HYDROLASE-RXN molecular_function owl:Class GO:2001065 biolink:NamedThing mannan binding Binding to mannan. tmpzr1t_l9r_go_relaxed.owl mannoglycan binding jl 2011-09-14T10:49:45Z molecular_function owl:Class GO:0120226 biolink:NamedThing succinyl-CoA binding Binding to succinyl-CoA, an omega-carboxyacyl-CoA having succinoyl as the S-acyl component. tmpzr1t_l9r_go_relaxed.owl succinyl-coenzyme A binding https://github.com/geneontology/go-ontology/issues/19243 krc 2020-05-19T15:51:32Z molecular_function owl:Class GO:0061676 biolink:NamedThing importin-alpha family protein binding Binding to a member of the importin-alpha family. tmpzr1t_l9r_go_relaxed.owl dph 2015-01-10T18:25:22Z molecular_function owl:Class GO:1900803 biolink:NamedThing brevianamide F metabolic process The chemical reactions and pathways involving brevianamide F. tmpzr1t_l9r_go_relaxed.owl cyclo-L-tryptophanyl-L-proline metabolism|L-prolyl-L-tryptophan anhydride metabolic process|cyclo-L-Trp-L-Pro metabolism|cyclo-(Trp-Pro) metabolism|tryptophan-proline diketopiperazine metabolism|brevianamide F metabolism|L-prolyl-L-tryptophan anhydride metabolism|L-tryptophyl-L-proline cyclic anhydride metabolism|cyclo-L-Trp-L-Pro metabolic process|L-tryptophyl-L-proline cyclic anhydride metabolic process|cyclo-L-tryptophanyl-L-proline metabolic process|tryptophan-proline diketopiperazine metabolic process di 2012-06-04T09:52:19Z biological_process owl:Class GO:0008892 biolink:NamedThing guanine deaminase activity Catalysis of the reaction: guanine + H2O = xanthine + NH3. tmpzr1t_l9r_go_relaxed.owl GAH activity|guanine aminohydrolase activity|guanine aminase activity|guanase activity RHEA:14665|MetaCyc:GUANINE-DEAMINASE-RXN|EC:3.5.4.3|Reactome:R-HSA-74255 molecular_function owl:Class GO:0014738 biolink:NamedThing regulation of muscle hyperplasia Any process that modulates the frequency, rate or extent of muscle hyperplasia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018865 biolink:NamedThing acrylonitrile metabolic process The chemical reactions and pathways involving acrylonitrile, a colorless, volatile liquid with a pungent odor. Acrylonitrile is used in the production of acrylic fibers, plastics, and synthetic rubbers. tmpzr1t_l9r_go_relaxed.owl acrylonitrile metabolism UM-BBD_pathwayID:acr biological_process owl:Class GO:0046571 biolink:NamedThing aspartate-2-keto-4-methylthiobutyrate transaminase activity Catalysis of the reaction: 2-keto-4-methylthiobutyrate + aspartate = methionine + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047341 biolink:NamedThing fucose-1-phosphate guanylyltransferase activity Catalysis of the reaction: beta-L-fucose 1-phosphate + GTP = diphosphate + GDP-L-fucose. tmpzr1t_l9r_go_relaxed.owl GDP-fucose diphosphorylase activity|GDP-fucose pyrophosphorylase activity|guanosine diphosphate L-fucose pyrophosphorylase activity|GTP:fucose-1-phosphate guanylyltransferase activity|GDP fucose pyrophosphorylase activity|GTP:L-fucose-1-phosphate guanylyltransferase activity|GTP:beta-L-fucose-1-phosphate guanylyltransferase activity|GDP-L-fucose pyrophosphorylase activity MetaCyc:2.7.7.30-RXN|EC:2.7.7.30|KEGG_REACTION:R01951|RHEA:13549|Reactome:R-HSA-6787533 molecular_function owl:Class GO:0044527 biolink:NamedThing formation of peptidyl-cystine persulfide by sulphur transfer from H2S The modification of a peptidyl-cystine residue in a protein by the direct addition of H2S, followed by the removal of 2 protons to form peptidyl-cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T09:46:23Z biological_process owl:Class GO:0103061 biolink:NamedThing trans-methoxy-C60-meroacyl-AMP ligase activity Catalysis of the reaction: ATP(4-) + H2O + a trans-methoxy-C60-meroacyl-[acp] <=> diphosphoric acid + a trans-methoxy-meroacyl-adenylate + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1G-4141 molecular_function owl:Class GO:0062143 biolink:NamedThing L-propargylglycine biosynthetic process The chemical reactions and pathways resulting in the formation of L-propargylglycine (Pra). L-propargylglycine is an antibiotic produced by Streptomyces bacteria. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17763 dph 2019-09-02T16:45:12Z biological_process owl:Class GO:0071624 biolink:NamedThing positive regulation of granulocyte chemotaxis Any process that increases the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-09T04:15:36Z biological_process owl:Class GO:0071400 biolink:NamedThing cellular response to oleic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to oleate mah 2009-12-11T04:40:38Z biological_process owl:Class GO:1990672 biolink:NamedThing medial-Golgi-derived vesicle fusion with Golgi trans cisterna membrane The joining of the lipid bilayer membrane around a medial-Golgi-derived vesicle to the lipid bilayer membrane around the Golgi trans cisterna. Vesicles are involved in anterograde transport. tmpzr1t_l9r_go_relaxed.owl bhm 2015-03-02T11:34:39Z biological_process owl:Class GO:1903499 biolink:NamedThing regulation of mitotic actomyosin contractile ring assembly Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl regulation of contractile ring assembly involved in mitotic cytokinesis|regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis|regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis|regulation of mitotic cytokinesis, actomyosin contractile ring assembly pr 2014-09-30T10:13:50Z biological_process owl:Class GO:1905526 biolink:NamedThing regulation of Golgi lumen acidification Any process that modulates the frequency, rate or extent of Golgi lumen acidification. tmpzr1t_l9r_go_relaxed.owl dph 2016-10-05T13:16:25Z biological_process owl:Class GO:0070643 biolink:NamedThing vitamin D 25-hydroxylase activity Catalysis of the hydroxylation of C-25 of any form of vitamin D. tmpzr1t_l9r_go_relaxed.owl ergocalciferol 25-hydroxylase activity|cholecalciferol 25-hydroxylase activity|vitamin D2 25-hydroxylase activity|calciferol 25-hydroxylase activity mah 2009-05-08T03:42:29Z molecular_function owl:Class GO:0061509 biolink:NamedThing asymmetric protein localization to old mitotic spindle pole body Any process in which a protein is transported to, or maintained to the old mitotic spindle pole body resulting in its being distributed asymmetrically. tmpzr1t_l9r_go_relaxed.owl dph 2013-02-21T13:49:26Z biological_process owl:Class GO:0061492 biolink:NamedThing asymmetric protein localization to old or new spindle pole body Any process in which a protein is transported to, or maintained to either the old or new spindle pole body resulting in its being distributed asymmetrically. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-06T15:23:15Z biological_process owl:Class GO:0002171 biolink:NamedThing low-affinity IgA receptor activity Combining with low affinity with an immunoglobulin of an IgA isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl low affinity IgA receptor activity hjd 2010-05-06T05:01:41Z molecular_function owl:Class GO:0019766 biolink:NamedThing IgA receptor activity Combining with an immunoglobulin of an IgA isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048497 biolink:NamedThing maintenance of floral organ identity The process in which the identity of a floral organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097073 biolink:NamedThing interferon regulatory factor 5 complex An interferon regulatory factor complex that consists of a homodimer of interferon regulatory factor 5. tmpzr1t_l9r_go_relaxed.owl IRF5:IRF5 complex pr 2011-06-15T04:28:57Z cellular_component owl:Class GO:0005702 biolink:NamedThing polytene chromosome weak point A region of the polytene chromosome where the diameter is considerably decreased, probably resulting from local differences in chromosome organization. tmpzr1t_l9r_go_relaxed.owl constriction cellular_component owl:Class GO:0033383 biolink:NamedThing geranyl diphosphate metabolic process The chemical reactions and pathways involving geranyl diphosphate, the universal precursor of the monoterpenes. tmpzr1t_l9r_go_relaxed.owl geranyldiphosphate metabolic process|geranyl diphosphate metabolism biological_process owl:Class GO:0140539 biolink:NamedThing regulation of melanotic encapsulation of foreign target Any process that modulates the frequency, rate or extent of melanotic encapsulation of foreign target. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16749 pg 2020-11-07T08:16:00Z biological_process owl:Class GO:1904018 biolink:NamedThing positive regulation of vasculature development Any process that activates or increases the frequency, rate or extent of vasculature development. tmpzr1t_l9r_go_relaxed.owl activation of vasculature development|up regulation of vascular system development|up regulation of vasculature development|up-regulation of vasculature development|activation of vascular system development|upregulation of vasculature development|up-regulation of vascular system development|positive regulation of vascular system development|upregulation of vascular system development sl 2015-03-06T22:17:04Z biological_process owl:Class GO:0032913 biolink:NamedThing negative regulation of transforming growth factor beta3 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta3. tmpzr1t_l9r_go_relaxed.owl negative regulation of TGF-B3 production|negative regulation of TGFB3 production|down regulation of transforming growth factor-beta3 production|negative regulation of transforming growth factor-beta3 production|down-regulation of transforming growth factor-beta3 production|inhibition of transforming growth factor-beta3 production|downregulation of transforming growth factor-beta3 production biological_process owl:Class GO:1901779 biolink:NamedThing pentalenolactone catabolic process The chemical reactions and pathways resulting in the breakdown of pentalenolactone. tmpzr1t_l9r_go_relaxed.owl pentalenolactone breakdown|pentalenolactone degradation|pentalenolactone catabolism yaf 2013-01-16T09:49:42Z biological_process owl:Class GO:0110121 biolink:NamedThing gamma-tubulin complex localization to cytoplasmic side of mitotic spindle pole body Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location at the cytoplasmic side of the mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-27T15:49:05Z biological_process owl:Class GO:1990735 biolink:NamedThing gamma-tubulin complex localization to mitotic spindle pole body Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location at a mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of gamma-tubulin complex localization to mitotic spindle pole body|gamma-tubulin complex localisation to mitotic spindle pole body|gamma-tubulin complex localization to mitotic SPB mah 2015-04-29T14:40:20Z biological_process owl:Class GO:1900533 biolink:NamedThing palmitic acid metabolic process The chemical reactions and pathways involving palmitic acid. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-09T07:03:55Z biological_process owl:Class GO:1902438 biolink:NamedThing response to vanadate(3-) Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vanadate(3-) stimulus. tmpzr1t_l9r_go_relaxed.owl di 2013-10-10T10:50:21Z biological_process owl:Class GO:0060511 biolink:NamedThing creation of an inductive signal by a mesenchymal cell involved in lung induction The process in which splanchnic mesenchymal cells send a signal over a short range to endodermal cells inducing them to form the primary lung bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031130 biolink:NamedThing creation of an inductive signal The process in which one cell or group of cells sends a signal over a short range to another cell or group of cells of different ancestry and developmental potential, thereby effecting a developmental change in the latter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033320 biolink:NamedThing UDP-D-xylose biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-D-xylose, uridinediphosphoxylose, a substance composed of xylose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose anabolism|UDP-D-xylose formation|UDP-D-xylose synthesis|UDP-D-xylose biosynthesis MetaCyc:PWY-4821 biological_process owl:Class GO:0035126 biolink:NamedThing post-embryonic genitalia morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the genitalia are generated and organized. tmpzr1t_l9r_go_relaxed.owl post-embryonic genital morphogenesis biological_process owl:Class GO:0061886 biolink:NamedThing negative regulation of mini excitatory postsynaptic potential Any process that decreases the frequency, rate or extent of mini excitatory postsynaptic potential. Mini excitatory postsynaptic potential is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-30T15:50:08Z biological_process owl:Class GO:0032702 biolink:NamedThing negative regulation of interleukin-19 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-19 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of interleukin-19 biosynthetic process|inhibition of interleukin-19 production|downregulation of interleukin-19 production|down-regulation of interleukin-19 production|down regulation of interleukin-19 production|negative regulation of IL-19 production GO:0045385 biological_process owl:Class GO:1990490 biolink:NamedThing archaeal proton-transporting A-type ATPase complex A large proton-transporting two-sector ATPase protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane and is found in Archaea. tmpzr1t_l9r_go_relaxed.owl archaeal A-type ATPase protein complex|A-type ATPase protein complex tt 2014-09-20T19:13:55Z cellular_component owl:Class GO:0047830 biolink:NamedThing D-octopine dehydrogenase activity Catalysis of the reaction: N2-(D-1-carboxyethyl)-L-arginine + NAD+ + H2O = L-arginine + pyruvate + NADH. tmpzr1t_l9r_go_relaxed.owl D-octopine synthase activity|2-N-(D-1-carboxyethyl)-L-arginine:NAD+ oxidoreductase (L-arginine-forming)|octopine:NAD oxidoreductase activity|octopine dehydrogenase activity|N2-(D-1-carboxyethyl)-L-arginine:NAD+ oxidoreductase (L-arginine-forming)|ODH activity EC:1.5.1.11|MetaCyc:D-OCTOPINE-DEHYDROGENASE-RXN|RHEA:16285 molecular_function owl:Class GO:0071494 biolink:NamedThing cellular response to UV-C Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm. tmpzr1t_l9r_go_relaxed.owl cellular response to shortwave ultraviolet light stimulus|cellular response to UV-C light stimulus|cellular response to UVC light stimulus|cellular response to shortwave ultraviolet radiation stimulus|cellular response to UV-C radiation stimulus|cellular response to UVC radiation stimulus|cellular response to germicidal ultraviolet light stimulus|cellular response to germicidal ultraviolet radiation stimulus mah 2009-12-18T02:22:01Z biological_process owl:Class GO:1904675 biolink:NamedThing regulation of somatic stem cell division Any process that modulates the frequency, rate or extent of somatic stem cell division. tmpzr1t_l9r_go_relaxed.owl regulation of somatic stem cell renewal rph 2015-09-14T08:47:22Z biological_process owl:Class GO:0018969 biolink:NamedThing thiocyanate metabolic process The chemical reactions and pathways involving thiocyanate, the anion of thiocyanic acid, a toxic cyanide derivative commonly formed as a by-product in the production of gas for fuel, coke, and substances for chemical industries. tmpzr1t_l9r_go_relaxed.owl thiocyanic acid metabolism|thiocyanic acid metabolic process|thiocyanate metabolism UM-BBD_pathwayID:thc|MetaCyc:P581-PWY biological_process owl:Class GO:0047057 biolink:NamedThing vitamin-K-epoxide reductase (warfarin-sensitive) activity Catalysis of the reaction: phylloquinol + a protein with a disulfide bond = phylloquinone + a protein with reduced L-cysteine residues. tmpzr1t_l9r_go_relaxed.owl vitamin K1 epoxide reductase activity|phylloquinone epoxide reductase activity https://github.com/geneontology/go-ontology/issues/21412 RHEA:57744|Reactome:R-HSA-159790|Reactome:R-HSA-6806647|EC:1.17.4.4|MetaCyc:1.1.4.1-RXN Formerly EC:1.1.4.1. molecular_function owl:Class GO:2001301 biolink:NamedThing lipoxin biosynthetic process The chemical reactions and pathways resulting in the formation of a lipoxin. A lipoxin is a non-classic eicosanoid and signalling molecule that has four conjugated double bonds and is derived from arachidonic acid. tmpzr1t_l9r_go_relaxed.owl lipoxin biosynthesis|lipoxin synthesis|lipoxin formation|lipoxin anabolism bf 2012-03-07T11:11:13Z biological_process owl:Class GO:0106368 biolink:NamedThing (deoxy)nucleoside phosphate kinase activity, dTTP as phosphate donor Catalysis of the reaction: a 2'-deoxyribonucleoside 5'-phosphate + dTTP = a 2'-deoxyribonucleoside 5'-diphosphate + dTDP. tmpzr1t_l9r_go_relaxed.owl RHEA:62132 hjd 2021-03-11T20:09:34Z molecular_function owl:Class GO:0009104 biolink:NamedThing lipopolysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide catabolism|LPS catabolic process|lipopolysaccharide degradation|lipopolysaccharide breakdown biological_process owl:Class GO:0004476 biolink:NamedThing mannose-6-phosphate isomerase activity Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphohexomutase activity|phosphohexoisomerase activity|phosphomannose isomerase activity|D-mannose-6-phosphate aldose-ketose-isomerase activity|phosphomannoisomerase activity|D-mannose-6-phosphate ketol-isomerase activity|mannose phosphate isomerase activity RHEA:12356|Reactome:R-HSA-532549|EC:5.3.1.8|Reactome:R-HSA-3781832|MetaCyc:MANNPISOM-RXN molecular_function owl:Class GO:0033379 biolink:NamedThing maintenance of protease location in T cell secretory granule A process in which a protease is maintained in a secretory granule in a T cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protease localization in T-cell secretory granule|maintenance of protease localization in T lymphocyte secretory granule|maintenance of protease localization in T cell secretory granule|maintenance of protease localization in T-lymphocyte secretory granule biological_process owl:Class GO:0052906 biolink:NamedThing tRNA (guanine(37)-N(1))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanine(37) in tRNA = N(1)-methylguanine(37) in tRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl tRNA (m(1)G(37)) methyltransferase activity|tRNA-(N(1)G37) methyltransferase activity|transfer RNA (m(1)G(37)) methyltransferase activity EC:2.1.1.228|MetaCyc:RXN-12458|RHEA:36899 molecular_function owl:Class GO:0009019 biolink:NamedThing tRNA (guanine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA (guanine-N1-)-methyltransferase activity|S-adenosyl-L-methionine:tRNA (guanine-1-N-)-methyltransferase activity|transfer ribonucleate guanine 1-methyltransferase activity|tRNA guanine 1-methyltransferase activity Reactome:R-HSA-6786621|Reactome:R-HSA-6787591|Reactome:R-HSA-6782859 molecular_function owl:Class GO:0000818 biolink:NamedThing nuclear MIS12/MIND complex A multiprotein kinetochore subcomplex that binds to centromeric chromatin and forms part of the inner kinetochore of a chromosome in the nucleus. It helps to recruit outer kinetochore subunits that will bind to microtubules. Nuclear localization arises in some organisms because the nuclear envelope is not broken down during mitosis. In S. cerevisiae, it consists of at least four proteins: Mtw1p, Nnf1p, Nsl1p, and Dsn1. tmpzr1t_l9r_go_relaxed.owl Mtw1p Including Nnf1p-Nsl1p-Dsn1p complex|MIND complex cellular_component owl:Class GO:0000444 biolink:NamedThing MIS12/MIND type complex A multiprotein kinetochore subcomplex that binds to centromeric chromatin and forms part of the inner kinetochore. It helps to recruit outer kinetochore subunits that will bind to microtubules. In humans, it consists of MIS12, DSN1, NSL1 and PMF1. tmpzr1t_l9r_go_relaxed.owl Mis12 complex cellular_component owl:Class GO:0000812 biolink:NamedThing Swr1 complex A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits. tmpzr1t_l9r_go_relaxed.owl SWR-C cellular_component owl:Class GO:0032302 biolink:NamedThing MutSbeta complex A heterodimer involved in binding to and correcting insertion/deletion mutations. In human the complex consists of two subunits, MSH2 and MSH3. tmpzr1t_l9r_go_relaxed.owl MSH2/MSH3 complex|MMR complex cellular_component owl:Class GO:0070373 biolink:NamedThing negative regulation of ERK1 and ERK2 cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. tmpzr1t_l9r_go_relaxed.owl negative regulation of ERK1 and ERK2 signalling pathway|down regulation of ERK1 and ERK2 cascade|negative regulation of ERK1 and ERK2 signaling pathway|negative regulation of MAPK3 cascade|negative regulation of ERK1 cascade|down-regulation of ERK1 and ERK2 cascade|negative regulation of ERK cascade|negative regulation of ERK1/2 cascade|downregulation of ERK1 and ERK2 cascade|inhibition of ERK1 and ERK2 cascade|negative regulation of MAPK1 cascade|negative regulation of ERK2 cascade biological_process owl:Class GO:0035979 biolink:NamedThing histone kinase activity (H2A-S139 specific) Catalysis of the transfer of a phosphate group to the serine-139 residue of the C-terminal tail of histone H2A. tmpzr1t_l9r_go_relaxed.owl histone kinase activity (H2A.x-S139 specific) Residue 1 of histone H2A is taken as the first residue following removal of the initiating Methionine (Met). bf 2011-08-22T01:13:34Z molecular_function owl:Class GO:0039672 biolink:NamedThing suppression by virus of host natural killer cell activation Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation in the host. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host NK-cell activation bf 2013-09-25T11:08:19Z biological_process owl:Class GO:1902665 biolink:NamedThing response to isobutanol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isobutanol stimulus. tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to isobutanol|response to 2-methylpropan-1-ol GO:1990337 biological_process owl:Class GO:0016590 biolink:NamedThing ACF complex An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals, Isw2 in S. cerevisiae), an ACF1 homolog, and generally no other subunits, though Xenopus is an exception with a third non-conserved subunit. ACF plays roles in regulation of RNA polymerase II transcription and in DNA replication and repair. tmpzr1t_l9r_go_relaxed.owl ATP-utilizing chromatin assembly and remodeling factor complex cellular_component owl:Class GO:0036146 biolink:NamedThing cellular response to mycotoxin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-12T11:08:22Z biological_process owl:Class GO:0044510 biolink:NamedThing envenomation resulting in positive regulation of signal transduction in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of signal transduction in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T05:03:22Z biological_process owl:Class GO:0044509 biolink:NamedThing envenomation resulting in modulation of signal transduction in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of signal transduction in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-23T04:58:10Z biological_process owl:Class GO:2000415 biolink:NamedThing positive regulation of fibronectin-dependent thymocyte migration Any process that activates or increases the frequency, rate or extent of fibronectin-dependent thymocyte migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of fibronectin-dependent thymic lymphocyte migration|positive regulation of fibronectin-dependent immature T-cell migration|positive regulation of fibronectin-dependent immature T cell migration|positive regulation of fibronectin-dependent immature T-lymphocyte migration|positive regulation of fibronectin-dependent immature T lymphocyte migration mah 2011-02-23T01:39:00Z biological_process owl:Class GO:0039524 biolink:NamedThing suppression by virus of host mRNA processing Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of mRNA processing in the host cell. mRNA processing is the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. tmpzr1t_l9r_go_relaxed.owl inhibition of host pre-mRNA processing by virus|negative regulation by virus of host mRNA processing|inhibition by virus of host mRNA processing|inhibition of host mRNA processing by virus VZ:903 bf 2011-06-22T04:51:55Z biological_process owl:Class GO:0046778 biolink:NamedThing modification by virus of host mRNA processing Any viral process that interferes with the processing of mRNA in the host cell. tmpzr1t_l9r_go_relaxed.owl viral perturbation of host mRNA processing biological_process owl:Class GO:0047675 biolink:NamedThing arabinonate dehydratase activity Catalysis of the reaction: D-arabinonate = 2-dehydro-3-deoxy-D-arabinonate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-arabinonate hydro-lyase activity|D-arabinonate hydro-lyase (2-dehydro-3-deoxy-D-arabinonate-forming) EC:4.2.1.5|KEGG_REACTION:R03032|MetaCyc:ARABINONATE-DEHYDRATASE-RXN|RHEA:21836 molecular_function owl:Class GO:1901288 biolink:NamedThing iron-sulfur-molybdenum cofactor biosynthetic process The chemical reactions and pathways resulting in the formation of iron-sulfur-molybdenum cofactor. tmpzr1t_l9r_go_relaxed.owl iron-molybdenum cofactor synthesis|iron-molybdenum cofactor biosynthetic process|iron-molybdenum cofactor formation|FeMo-co biosynthesis|FeMo-co anabolism|iron-molybdenum cofactor biosynthesis|iron-sulfur-molybdenum cofactor synthesis|FeMo-co synthesis|iron-sulfur-molybdenum cofactor biosynthesis|iron-sulfur-molybdenum cofactor formation|FeMo-co formation|FeMo-co biosynthetic process|iron-molybdenum cofactor anabolism|iron-sulfur-molybdenum cofactor anabolism yaf 2012-08-17T15:39:48Z biological_process owl:Class GO:1990556 biolink:NamedThing mitochondrial isopropylmalate transmembrane transport The process in which 2-isopropylmalate(2-) is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:47:11Z biological_process owl:Class GO:0050490 biolink:NamedThing 1,4-lactonase activity Catalysis of the reaction: H2O + a 1,4-lactone = a 4-hydroxyacid. tmpzr1t_l9r_go_relaxed.owl 1,4-lactone hydroxyacylhydrolase activity|gamma-lactonase activity EC:3.1.1.25|RHEA:12745|MetaCyc:14-LACTONASE-RXN molecular_function owl:Class GO:0002046 biolink:NamedThing opsin binding Binding to an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception. tmpzr1t_l9r_go_relaxed.owl metarhodopsin binding GO:0016030 molecular_function owl:Class GO:0008447 biolink:NamedThing L-ascorbate oxidase activity Catalysis of the reaction: 4 L-ascorbate + O(2) <=> 4 monodehydroascorbate + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl AAO|AA oxidase activity|L-ascorbate:oxygen oxidoreductase activity|ascorbate dehydrogenase activity|ascorbic oxidase activity|ascorbase activity|ascorbic acid oxidase activity|L-ascorbate:O2 oxidoreductase activity|ascorbate oxidase activity|L-ascorbic acid oxidase activity https://github.com/geneontology/go-ontology/issues/21022 RHEA:30243|EC:1.10.3.3|MetaCyc:L-ASCORBATE-OXIDASE-RXN molecular_function owl:Class GO:1900950 biolink:NamedThing regulation of 18-methylnonadec-1-ene biosynthetic process Any process that modulates the frequency, rate or extent of 18-methylnonadec-1-ene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of 18-methylnonadec-1-ene biosynthesis|regulation of 18-methylnonadec-1-ene anabolism|regulation of 18-methylnonadec-1-ene synthesis|regulation of 18-methylnonadec-1-ene formation tt 2012-06-14T03:23:34Z biological_process owl:Class GO:0098654 biolink:NamedThing CENP-A recruiting complex A protein complex that includes Mis16(Yippee family) and/or Mis18 (WD repeat) subunits that is involved in the deposition of centromere specific (CENP-A containing) nucleosomes at the centromere. tmpzr1t_l9r_go_relaxed.owl MIS18 complex cellular_component owl:Class GO:0019869 biolink:NamedThing chloride channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a chloride channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061855 biolink:NamedThing negative regulation of neuroblast migration Any process that stops, prevents, or reduces the frequency, rate or extent of neuroblast migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-03-08T18:26:21Z biological_process owl:Class GO:0050943 biolink:NamedThing negative regulation of iridophore differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of iridophore differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of iridophore differentiation|inhibition of iridophore differentiation|down regulation of iridophore differentiation|downregulation of iridophore differentiation biological_process owl:Class GO:0046180 biolink:NamedThing ketogluconate biosynthetic process The chemical reactions and pathways resulting in the formation of ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group. tmpzr1t_l9r_go_relaxed.owl ketogluconate anabolism|ketogluconate biosynthesis|ketogluconate synthesis|ketogluconate formation biological_process owl:Class GO:0005148 biolink:NamedThing prolactin receptor binding Binding to a prolactin receptor. tmpzr1t_l9r_go_relaxed.owl prolactin|prolactin receptor ligand molecular_function owl:Class GO:1905062 biolink:NamedThing positive regulation of cardioblast proliferation Any process that activates or increases the frequency, rate or extent of cardioblast proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of cardioblast proliferation|activation of cardioblast proliferation|up regulation of cardioblast proliferation|up-regulation of cardioblast proliferation bc 2016-03-21T11:00:23Z biological_process owl:Class GO:0015036 biolink:NamedThing disulfide oxidoreductase activity Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds. tmpzr1t_l9r_go_relaxed.owl disulphide oxidoreductase activity Reactome:R-HSA-1222644|Reactome:R-HSA-264997|Reactome:R-HSA-1222417|Reactome:R-HSA-1222690|Reactome:R-HSA-1222655 molecular_function owl:Class GO:0071182 biolink:NamedThing MAML3-RBP-Jkappa-ICN4 complex A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML3-RBP-Jkappa-Notch4 complex mah 2009-11-23T02:52:35Z cellular_component owl:Class GO:0030716 biolink:NamedThing oocyte fate determination The process in which a cell becomes capable of differentiating autonomously into an oocyte cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl oocyte cell fate determination biological_process owl:Class GO:0072010 biolink:NamedThing glomerular epithelium development The process whose specific outcome is the progression of the glomerular epithelium over time, from its formation to the mature structure. The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:02:14Z biological_process owl:Class GO:0003829 biolink:NamedThing beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-(1->3)-N-acetyl-D-galactosaminyl-R = UDP + beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-D-galactosaminyl-R. tmpzr1t_l9r_go_relaxed.owl core 6-beta-GlcNAc-transferase A|beta6-N-acetylglucosaminyltransferase activity|beta(6)-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-mucin beta-(1->6)-acetylglucosaminyltransferase activity|core 2 acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-mucin beta-(1,6)-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to N-acetyl-D-galactosamine of beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R) beta-1,6-N-acetyl-D-glucosaminyltransferase activity|O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity https://github.com/geneontology/go-ontology/issues/21793 Reactome:R-HSA-914012|Reactome:R-HSA-914018|RHEA:18705|MetaCyc:2.4.1.102-RXN|EC:2.4.1.102 molecular_function owl:Class GO:0034436 biolink:NamedThing glycoprotein transport The directed movement of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072177 biolink:NamedThing mesonephric duct development The process whose specific outcome is the progression of a mesonephric duct over time, from its initial formation to a mature structure. A mesonephric duct is a tube drains the mesonephros. tmpzr1t_l9r_go_relaxed.owl Wolffian duct development mah 2010-02-26T02:32:22Z biological_process owl:Class GO:0005262 biolink:NamedThing calcium channel activity Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-139854|Reactome:R-HSA-8949145|Reactome:R-HSA-139855|Reactome:R-HSA-210420|Reactome:R-HSA-8949178|Reactome:R-HSA-3295579 molecular_function owl:Class GO:0010032 biolink:NamedThing meiotic chromosome condensation Compaction of chromatin structure prior to meiosis in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl chromosome condensation involved in meiotic cell cycle biological_process owl:Class GO:0061818 biolink:NamedThing tRNA folding The process of assisting in the folding of tRNAs into the correct tertiary structure. tmpzr1t_l9r_go_relaxed.owl dph 2016-12-13T15:54:40Z biological_process owl:Class GO:0045615 biolink:NamedThing positive regulation of plasmatocyte differentiation Any process that activates or increases the frequency, rate or extent of plasmatocyte differentiation. tmpzr1t_l9r_go_relaxed.owl stimulation of plasmatocyte differentiation|up-regulation of plasmatocyte differentiation|activation of plasmatocyte differentiation|upregulation of plasmatocyte differentiation|up regulation of plasmatocyte differentiation biological_process owl:Class GO:0103073 biolink:NamedThing anandamide amidohydrolase activity Catalysis of the reaction: anandamide + H2O <=> arachidonate + ethanolaminium(1+). tmpzr1t_l9r_go_relaxed.owl RHEA:26136|MetaCyc:RXN6666-2|EC:3.5.1.99 molecular_function owl:Class GO:0140431 biolink:NamedThing DNA-(abasic site) binding Binding to a DNA site that has neither a purine nor a pyrimidine base. Apurinic sites can form spontaneously or when DNA glycosylase removes a damaged base. tmpzr1t_l9r_go_relaxed.owl DNA AP site binding|DNA-(apurinic site/apyrimidinic site) binding|DNA-(apurinic site) binding|DNA-(apyrimidinic site) binding https://github.com/geneontology/go-ontology/issues/18878 pg 2020-02-19T05:30:09Z molecular_function owl:Class GO:0018866 biolink:NamedThing adamantanone metabolic process The chemical reactions and pathways involving adamantanone, tricyclo(3.3.1.13,7)decanone, a white crystalline solid used as an intermediate for microelectronics in the production of photoresists. tmpzr1t_l9r_go_relaxed.owl adamantanone metabolism UM-BBD_pathwayID:ada biological_process owl:Class GO:0033348 biolink:NamedThing tetrose biosynthetic process The chemical reactions and pathways resulting in the formation of a tetrose, any monosaccharide with a chain of four carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl tetrose synthesis|tetrose anabolism|tetrose biosynthesis|tetrose formation biological_process owl:Class GO:0033347 biolink:NamedThing tetrose metabolic process The chemical reactions and pathways involving a tetrose, any monosaccharide with a chain of four carbon atoms in the molecule. tmpzr1t_l9r_go_relaxed.owl tetrose metabolism biological_process owl:Class GO:0050249 biolink:NamedThing Renilla-luciferin sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + Renilla luciferin = adenosine 3',5'-diphosphate + H(+) + luciferyl sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:Renilla luciferin sulfotransferase activity|luciferin sulfokinase activity|luciferin sulfotransferase activity|luciferin sulfokinase (3'-phosphoadenylyl sulfate:luciferin sulfotransferase)|Renilla-luciferin sulphotransferase activity KEGG_REACTION:R03138|MetaCyc:RENILLA-LUCIFERIN-SULFOTRANSFERASE-RXN|EC:2.8.2.10|RHEA:20481 molecular_function owl:Class GO:0072053 biolink:NamedThing renal inner medulla development The process whose specific outcome is the progression of the renal inner medulla over time, from its formation to the mature structure. The renal inner medulla is unique to mammalian kidneys and is the innermost region of the mammalian kidney. tmpzr1t_l9r_go_relaxed.owl inner renal medulla development mah 2010-01-25T03:59:37Z biological_process owl:Class GO:0008495 biolink:NamedThing protoheme IX farnesyltransferase activity Catalysis of the reaction: protoheme IX + (2E,6E)-farnesyl diphosphate + H2O = heme O + diphosphate. tmpzr1t_l9r_go_relaxed.owl heme A:farnesyltransferase activity|protohaem IX farnesyltransferase activity|heme O synthase activity|haem O synthase activity EC:2.5.1.141|RHEA:28070|Reactome:R-HSA-2995330|MetaCyc:HEMEOSYN-RXN molecular_function owl:Class GO:0004311 biolink:NamedThing farnesyltranstransferase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl pyrophosphate synthase activity|farnesyltransferase activity|trans,trans-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase activity|geranylgeranyl-PP synthetase activity|geranylgeranyl-diphosphate synthase activity|geranylgeranyl pyrophosphate synthetase activity EC:2.5.1.29|RHEA:17653|KEGG_REACTION:R02061|MetaCyc:FARNESYLTRANSTRANSFERASE-RXN The catalyzed reaction forms (free) geranylgeranyl diphosphate. There is no relationship between this activity and protein farnesyltransferase activity, GO:0004660, where the catalyzed reaction transfers a farnesyl group from farnesyl diphosphate to a target protein. molecular_function owl:Class GO:0070846 biolink:NamedThing Hsp90 deacetylation The modification of an Hsp90 protein by removal of acetyl groups. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-31T12:58:47Z biological_process owl:Class GO:0075002 biolink:NamedThing adhesion of symbiont germination tube to host The attachment of a germination tube of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont germination tube to host during symbiotic interaction Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0075001 biolink:NamedThing adhesion of symbiont infection structure to host The attachment of an infection structure of the symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont infection structure to host during symbiotic interaction|attachment of symbiont infection structure to host Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products of the symbiont involved in this process. biological_process owl:Class GO:0005132 biolink:NamedThing type I interferon receptor binding Binding to an interferon-type I receptor, a heterodimeric complex composed of an alpha subunit (IFNAR1) and a beta subunit (IFNAR2). tmpzr1t_l9r_go_relaxed.owl IFNAR2 binding|IFNAR binding|interferon-alpha/beta receptor ligand|IFNAR1 binding|interferon-alpha/beta receptor binding|interferon-alpha/beta molecular_function owl:Class GO:1902631 biolink:NamedThing negative regulation of membrane hyperpolarization Any process that stops, prevents or reduces the frequency, rate or extent of membrane hyperpolarization. tmpzr1t_l9r_go_relaxed.owl inhibition of membrane hyperpolarization|down regulation of membrane hyperpolarization|down-regulation of membrane hyperpolarization|downregulation of membrane hyperpolarization krc 2014-01-17T18:28:05Z biological_process owl:Class GO:0019307 biolink:NamedThing mannose biosynthetic process The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. tmpzr1t_l9r_go_relaxed.owl mannose anabolism|mannose synthesis|mannose formation|mannose biosynthesis biological_process owl:Class GO:0006013 biolink:NamedThing mannose metabolic process The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. tmpzr1t_l9r_go_relaxed.owl mannose metabolism biological_process owl:Class GO:0035732 biolink:NamedThing nitric oxide storage The accumulation and maintenance in cells or tissues of nitric oxide (NO). Nitric oxide is stored in the form of dinitrosyl-iron complexes, which are stabilized, and possibly sequestered, by binding to glutathione S-transferase proteins. tmpzr1t_l9r_go_relaxed.owl NO storage bf 2011-03-11T10:00:31Z biological_process owl:Class GO:0004848 biolink:NamedThing ureidoglycolate hydrolase activity Catalysis of the reaction: (S)-ureidoglycolate + H(2)O + 2 H(+) = CO(2) + glyoxylate + 2 NH(4)(+). tmpzr1t_l9r_go_relaxed.owl (S)-ureidoglycolate amidohydrolase (decarboxylating) RHEA:19809|MetaCyc:UREIDOGLYCOLATE-HYDROLASE-RXN|KEGG_REACTION:R00469|EC:3.5.3.19 Take care to annotate to the reaction, not simply the enzyme name. The name "ureidoglycolate hydrolase" has variously been used to refer to two distinctly different enzymes. Both enzymes act on ureidoglycolate and produce glyoxylate, but the mechanism and reaction products are different. The "ureidoglycolate hydrolase" listed in the Enzyme commission (EC) is a ureidoglycolate amidohydrolase, releasing ammonia, (EC:3.5.3.19, GO:0004848). The "ureidoglycolate hydrolase" characterized in PMID:3915539 (published prior to the EC designation of EC:3.5.3.19) is a ureidoglycolate lyase, releasing urea (EC:4.3.2.3, GO:0050385). The inappropriate labelling of ureidoglycolate lyase as EC:3.5.3.19 has caused much confusion in the literature (see PMID:24107613). Take care to correctly annotate based on the reaction products, rather than name. molecular_function owl:Class GO:0002135 biolink:NamedThing CTP binding Binding to CTP, cytidine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002606 biolink:NamedThing positive regulation of dendritic cell antigen processing and presentation Any process that activates or increases the frequency, rate, or extent of dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl activation of dendritic cell antigen processing and presentation|stimulation of dendritic cell antigen processing and presentation|upregulation of dendritic cell antigen processing and presentation|up regulation of dendritic cell antigen processing and presentation|up-regulation of dendritic cell antigen processing and presentation biological_process owl:Class GO:0018378 biolink:NamedThing cytochrome c-heme linkage via heme-L-cysteine The linkage of cytochromes and other heme proteins to heme via heme-L-cysteine. tmpzr1t_l9r_go_relaxed.owl cytochrome c-haem linkage via haem-L-cysteine RESID:AA0135 biological_process owl:Class GO:0019454 biolink:NamedThing L-cysteine catabolic process via cystine, using glutathione-cystine transhydrogenase The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme glutathione-cystine transhydrogenase (EC:1.8.4.4). tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation via cystine, using glutathione-cystine transhydrogenase|L-cysteine breakdown via cystine, using glutathione-cystine transhydrogenase biological_process owl:Class GO:0042044 biolink:NamedThing fluid transport The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009685 biolink:NamedThing gibberellin metabolic process The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. tmpzr1t_l9r_go_relaxed.owl gibberellic acid metabolism|gibberellic acid metabolic process|gibberellin metabolism biological_process owl:Class GO:1900235 biolink:NamedThing negative regulation of Kit signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of Kit signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of stem cell factor receptor signaling pathway|downregulation of stem cell factor receptor signaling pathway|negative regulation of Kit signalling pathway|inhibition of stem cell factor signaling pathway|downregulation of stem cell factor signaling pathway|down-regulation of stem cell factor receptor signaling pathway|down regulation of stem cell factor receptor signaling pathway|inhibition of stem cell factor receptor signaling pathway|downregulation of Kit signaling pathway|down-regulation of stem cell factor signaling pathway|down regulation of Kit signaling pathway|inhibition of Kit signaling pathway|down-regulation of Kit signaling pathway|down regulation of stem cell factor signaling pathway|negative regulation of stem cell factor signaling pathway bf 2012-03-23T02:54:23Z biological_process owl:Class GO:0002395 biolink:NamedThing immune response in nasopharyngeal-associated lymphoid tissue An immune response taking place in the nasopharyngeal-associated lymphoid tissue (NALT). NALT includes the tonsils and adenoids. tmpzr1t_l9r_go_relaxed.owl immune response in NALT biological_process owl:Class GO:0043836 biolink:NamedThing xanthine hydrolase activity Catalysis of the reaction: xanthine + H2O = 4-ureido-5-imidazole carboxylate. tmpzr1t_l9r_go_relaxed.owl xanthinase activity MetaCyc:R127-RXN molecular_function owl:Class GO:0009440 biolink:NamedThing cyanate catabolic process The chemical reactions and pathways resulting in the breakdown of cyanate, NCO-, the anion of cyanic acid. tmpzr1t_l9r_go_relaxed.owl cyanate breakdown|cyanate catabolism|cyanate degradation biological_process owl:Class GO:0071598 biolink:NamedThing neuronal ribonucleoprotein granule A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli. tmpzr1t_l9r_go_relaxed.owl neuronal RNA granule|neuronal RNP granule mah 2010-02-04T04:01:57Z cellular_component owl:Class GO:0098850 biolink:NamedThing extrinsic component of synaptic vesicle membrane The component of the synaptic vesicle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004552 biolink:NamedThing octanol dehydrogenase activity Catalysis of the reaction: 1-octanol + NAD(+) = 1-octanal + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 1-octanol dehydrogenase activity|octanol:NAD+ oxidoreductase activity EC:1.1.1.73|MetaCyc:OCTANOL-DEHYDROGENASE-RXN|KEGG_REACTION:R02878|RHEA:24620 molecular_function owl:Class GO:0047257 biolink:NamedThing diglucosyl diacylglycerol synthase activity Catalysis of the reaction: 1,2-diacyl-3-O-(alpha-D-glucopyranosyl)-sn-glycerol + UDP-D-glucose = UDP + 1,2-diacyl-3-O-(alpha-D-glucopyranosyl(1,2)-O-alpha-D-glucopyranosyl)-sn-glycerol. tmpzr1t_l9r_go_relaxed.owl MGlcDAG (1->2) glucosyltransferase activity|monoglucosyl diacylglycerol (1->2) glucosyltransferase activity|UDP-glucose:1,2-diacyl-3-O-(alpha-D-glucopyranosyl)-sn-glycerol (1->2) glucosyltransferase activity|diglucosyl diacylglycerol (DGlcDAG) synthase activity|DGlcDAG synthase activity RHEA:19165|MetaCyc:2.4.1.208-RXN|EC:2.4.1.208 molecular_function owl:Class GO:1990862 biolink:NamedThing nuclear membrane complex Bqt3-Bqt4 A protein complex that resides in the inner nuclear membrane and anchors telomeres to the nuclear envelope. In fission yeast, it is composed of Bqt3 and Bqt4. tmpzr1t_l9r_go_relaxed.owl al 2015-09-25T12:14:28Z cellular_component owl:Class GO:0034549 biolink:NamedThing N-cyclopropylammelide alkylamino hydrolase activity Catalysis of the reaction: N-cyclopropylammelide + H2O = cyclopropylamine + cyanuric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8020|KEGG_REACTION:R06972|UM-BBD_reactionID:r0827 molecular_function owl:Class GO:0039010 biolink:NamedThing specification of pronephric distal tubule identity The process in which the distal tubule of the pronephric nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T09:51:28Z biological_process owl:Class GO:0009302 biolink:NamedThing sno(s)RNA transcription The synthesis of snoRNA class RNA (also referred to as sRNA in Archaea) from a DNA template. tmpzr1t_l9r_go_relaxed.owl sRNA transcription|snoRNA transcription https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0003870 biolink:NamedThing 5-aminolevulinate synthase activity Catalysis of the reaction: glycine + H(+) + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA. tmpzr1t_l9r_go_relaxed.owl delta-aminolevulinate synthetase activity|ALAS activity|delta-ALA synthetase activity|ALA synthase activity|succinyl-CoA:glycine C-succinyltransferase (decarboxylating)|5-aminolevulinate synthetase activity|aminolevulinic acid synthetase activity|delta-aminolevulinic acid synthetase activity|ALA synthetase activity|delta-aminolevulinic acid synthase activity|5-aminolevulinic acid synthetase activity|delta-aminolevulinic synthetase activity|aminolevulinate synthetase activity|5-aminolevulinic acid synthase activity|aminolevulinic synthetase activity|aminolevulinic acid synthase activity|delta-aminolevulinate synthase activity|alpha-aminolevulinic acid synthase activity|aminolevulinate synthase activity EC:2.3.1.37|Reactome:R-HSA-189442|KEGG_REACTION:R00830|RHEA:12921|MetaCyc:5-AMINOLEVULINIC-ACID-SYNTHASE-RXN molecular_function owl:Class GO:0016749 biolink:NamedThing N-succinyltransferase activity Catalysis of the transfer of a succinyl group to a nitrogen atom on the acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019203 biolink:NamedThing carbohydrate phosphatase activity Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-3791349|Reactome:R-HSA-3781011|Reactome:R-HSA-3781018 molecular_function owl:Class GO:0008353 biolink:NamedThing RNA polymerase II CTD heptapeptide repeat kinase activity Catalysis of the reaction: ATP + (DNA-directed RNA polymerase II) = ADP + phospho-(DNA-directed RNA polymerase II); phosphorylation occurs on residues in the carboxy-terminal domain (CTD) repeats. tmpzr1t_l9r_go_relaxed.owl RNA polymerase subunit kinase activity|CTD kinase activity|ATP:DNA-directed RNA polymerase phosphotransferase activity|[RNA-polymerase]-subunit kinase activity|RNA polymerase II carboxy-terminal domain kinase activity|RNA-polymerase-subunit kinase activity|STK9 MetaCyc:RNA-POLYMERASE-SUBUNIT-KINASE-RXN|EC:2.7.11.23|Reactome:R-HSA-167191|RHEA:10216|Reactome:R-HSA-170706|Reactome:R-HSA-170704 molecular_function owl:Class GO:0021944 biolink:NamedThing neuronal-glial interaction involved in hindbrain glial-mediated radial cell migration The changes in adhesion between a neuronal cell and a glial cell as a component of the process of hindbrain glial-mediated radial cell migration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015129 biolink:NamedThing lactate transmembrane transporter activity Enables the transfer of lactate from one side of a membrane to the other. Lactate is 2-hydroxypropanoate, CH3-CHOH-COOH; L(+)-lactate is formed by anaerobic glycolysis in animal tissues, and DL-lactate is found in sour milk, molasses and certain fruit juices. tmpzr1t_l9r_go_relaxed.owl monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity Reactome:R-HSA-373867|Reactome:R-HSA-373875 molecular_function owl:Class GO:0071245 biolink:NamedThing cellular response to carbon monoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:44:43Z biological_process owl:Class GO:0061801 biolink:NamedThing laminin-5B complex A laminin complex composed of alpha3B, beta3 and gamma2 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin 3B32 complex dph 2016-10-26T15:05:15Z cellular_component owl:Class GO:0042724 biolink:NamedThing thiamine-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), and related compounds. tmpzr1t_l9r_go_relaxed.owl thiamine and derivative biosynthetic process|thiamine-containing compound biosynthesis|thiamin-containing compound biosynthetic process|vitamin B1 and derivative biosynthetic process|thiamine-containing compound formation|vitamin B1 and derivative biosynthesis|thiamine-containing compound anabolism|thiamin and derivative biosynthetic process|thiamine and derivative biosynthesis|thiamine-containing compound synthesis|thiamin and derivative biosynthesis biological_process owl:Class GO:0106402 biolink:NamedThing Lewis x epitope biosynthetic process The chemical reactions and pathways resulting in the formation of a Lewis x epitope, a trisaccharide (beta-D-galactosyl-(1,4)-[alpha-L-fucosyl-(1,3)]-N-acetyl-beta-D-glucosamine) expressed on several glycolipids, glycoproteins, and proteoglycans of the nervous system. The related Lewis x epitope is formed by alpha(1,3) fucosylation of the N-acetylglucosaminyl residue of a type 2 histo-blood group antigen precursor disaccharide. tmpzr1t_l9r_go_relaxed.owl sialyl-Lewis X biosynthetic process|sLeX biosynthetic process hjd 2021-10-12T20:20:55Z biological_process owl:Class GO:2000430 biolink:NamedThing positive regulation of neutrophil aggregation Any process that activates or increases the frequency, rate or extent of neutrophil aggregation. tmpzr1t_l9r_go_relaxed.owl positive regulation of neutrophilic leukocyte aggregation|positive regulation of neutrophil leucocyte aggregation|positive regulation of neutrocyte aggregation ebc 2011-02-28T05:19:51Z biological_process owl:Class GO:0009811 biolink:NamedThing stilbene biosynthetic process The chemical reactions and pathways resulting in the formation of stilbenes, a class of polyketide compounds formed from cinnamic acid and three molecules of malonyl CoA. tmpzr1t_l9r_go_relaxed.owl stilbene biosynthesis|stilbene synthesis|stilbene formation|stilbene anabolism biological_process owl:Class GO:0008551 biolink:NamedThing P-type cadmium transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cd2+(in) -> ADP + phosphate + Cd2+(out). tmpzr1t_l9r_go_relaxed.owl cadmium-translocating P-type ATPase activity|cadmium-exporting ATPase activity|Cd(2+)-exporting ATPase activity|Cd2+-exporting ATPase activity|cadmium exporting ATPase activity|cadmium transmembrane transporter activity, phosphorylative mechanism RHEA:12132|EC:7.2.2.21|MetaCyc:3.6.3.3-RXN GO:0008561 molecular_function owl:Class GO:0002538 biolink:NamedThing arachidonic acid metabolite production involved in inflammatory response The synthesis or release of products of arachidonic acid metabolism following a stimulus as part of an inflammatory response, resulting in an increase in their intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl arachidonic acid metabolite production involved in acute inflammatory response|production of arachidonic acid metabolites involved in acute inflammatory response|production of arachidonic acid metabolites involved in inflammatory response biological_process owl:Class GO:0032144 biolink:NamedThing 4-aminobutyrate transaminase complex A homodimeric protein complex that possesses 4-aminobutyrate transaminase activity. tmpzr1t_l9r_go_relaxed.owl GABA-T complex|GABA transaminase complex|ABAT complex cellular_component owl:Class GO:1990867 biolink:NamedThing response to gastrin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gastrin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-09-25T16:22:39Z biological_process owl:Class GO:0047178 biolink:NamedThing glycerophospholipid acyltransferase (CoA-dependent) activity Catalysis of the reaction: 1-radyl-2-lyso-sn-glycero-3-phosphoethanolamine + 1-radyl-2-acyl-sn-glycero-3-phosphocholine = 1-radyl-2-lyso-sn-glycero-3-phosphocholine + 1-radyl-2-acyl-sn-glycero-3-phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl 1-organyl-2-acyl-sn-glycero-3-phosphocholine:1-organyl-2-lyso-sn-glycero-3-phosphoethanolamine acyltransferase (CoA-dependent) MetaCyc:2.3.1.148-RXN|RHEA:20972|EC:2.3.1.148 molecular_function owl:Class GO:0102040 biolink:NamedThing fumarate reductase (menaquinone) Catalysis of the reaction: fumarate + a menaquinol = succinate + a menaquinone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R601-RXN|RHEA:27834|EC:1.3.5.4 molecular_function owl:Class GO:0070482 biolink:NamedThing response to oxygen levels Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060998 biolink:NamedThing regulation of dendritic spine development Any process that modulates the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-20T09:17:06Z biological_process owl:Class GO:0120060 biolink:NamedThing regulation of gastric emptying Any process that modulates the frequency, rate or extent of any gastric emptying process, the process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum. tmpzr1t_l9r_go_relaxed.owl regulation of small intestine emptying|regulation of small bowel emptying krc 2017-06-13T21:47:16Z biological_process owl:Class GO:1990427 biolink:NamedThing stereocilia tip-link density An electron-dense plaque at either end of a stereocilia tip link that provides the anchor in the stereocilia membrane. tmpzr1t_l9r_go_relaxed.owl sl 2014-07-25T20:55:36Z cellular_component owl:Class GO:0045854 biolink:NamedThing positive regulation of bicoid mRNA localization Any process that activates or increases the frequency, rate or extent of the process in which bicoid mRNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl positive regulation of bicoid mRNA localisation|upregulation of bicoid mRNA localization|up-regulation of bicoid mRNA localization|activation of bicoid mRNA localization|stimulation of bicoid mRNA localization|up regulation of bicoid mRNA localization biological_process owl:Class GO:1903866 biolink:NamedThing palisade mesophyll development The process whose specific outcome is the progression of a palisade mesophyll over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl palisade parenchyma development tb 2015-02-04T21:51:44Z biological_process owl:Class GO:0006202 biolink:NamedThing GMP catabolic process to guanine The chemical reactions and pathways resulting in the breakdown of guanosine monophosphate into other compounds, including guanine. tmpzr1t_l9r_go_relaxed.owl GMP breakdown to guanine|GMP degradation to guanine biological_process owl:Class GO:0003947 biolink:NamedThing (N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + (N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide = UDP + N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylgalactosamine-acetylneuraminylgalactosylglucosylceramide acetylgalactosaminyltransferase activity|ganglioside GM3 acetylgalactosaminyltransferase activity|UDP-N-acetylgalactosamine GM3 N-acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:1-O-[O-(N-acetyl-alpha-neuraminosyl)-(2->3)-O-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]-ceramide 1,4-beta-N-acetyl-D-galactosaminyltransferase activity|GM2/GD2-synthase activity|ganglioside GM2 synthase activity|UDP-N-acetyl-D-galactosamine:(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide N-acetyl-D-galactosaminyltransferase activity|UDP acetylgalactosamine-(N-acetylneuraminyl)-D-galactosyl-D-glucosylceramide acetylgalactosaminyltransferase activity|GalNAc-T activity|asialo-GM2 synthase activity|uridine diphosphoacetylgalactosamine-ganglioside GM3 acetylgalactosaminyltransferase activity|beta-1,4N-aetylgalactosaminyltransferase activity|uridine diphosphoacetylgalactosamine-hematoside acetylgalactosaminyltransferase activity|GM2 synthase activity EC:2.4.1.92|Reactome:R-HSA-8856223|MetaCyc:2.4.1.92-RXN|RHEA:12588 molecular_function owl:Class GO:0002069 biolink:NamedThing columnar/cuboidal epithelial cell maturation The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell to attain its fully functional state. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071024 biolink:NamedThing SL snRNP A ribonucleoprotein complex that contains spliced leader (SL) RNA and associated proteins. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0075069 biolink:NamedThing adhesion of symbiont infection cushion to host The attachment of an infection cushion of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont infection cushion to host during symbiotic interaction Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0019270 biolink:NamedThing aerobactin biosynthetic process The chemical reactions and pathways resulting in the formation of aerobactin (C22H36N4O13), a hydroxamate iron transport compound. It is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. tmpzr1t_l9r_go_relaxed.owl aerobactin anabolism|aerobactin formation|aerobactin biosynthesis|aerobactin synthesis MetaCyc:AEROBACTINSYN-PWY biological_process owl:Class GO:0097101 biolink:NamedThing blood vessel endothelial cell fate specification The process involved in the specification of identity of a blood vessel endothelial cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. A blood vessel endothelial cell is an endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-27T10:24:32Z biological_process owl:Class GO:0102620 biolink:NamedThing 3-geranylgeranylindole NADPH:oxygen oxidoreductase (10,11-epoxidizing) activity Catalysis of the reaction: 3-geranylgeranylindole + O2 + NADPH + H+ = 10,11-epoxy-3-geranylgeranylindole + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15495 molecular_function owl:Class GO:0042488 biolink:NamedThing positive regulation of odontogenesis of dentin-containing tooth Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages that are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates. tmpzr1t_l9r_go_relaxed.owl up-regulation of odontogenesis|positive regulation of odontogenesis of dentine-containing tooth|stimulation of odontogenesis|upregulation of odontogenesis|positive regulation of odontogenesis of dentine-containing teeth|activation of odontogenesis|up regulation of odontogenesis biological_process owl:Class GO:0042482 biolink:NamedThing positive regulation of odontogenesis Any process that activates or increases the frequency, rate or extent of the formation and development of a tooth or teeth. tmpzr1t_l9r_go_relaxed.owl positive regulation of tooth development|positive regulation of odontogenesis of calcareous or chitinous tooth|up-regulation of odontogenesis|upregulation of odontogenesis|activation of odontogenesis|stimulation of odontogenesis|up regulation of odontogenesis GO:0042485 biological_process owl:Class GO:0004512 biolink:NamedThing inositol-3-phosphate synthase activity Catalysis of the reaction: D-glucose 6-phosphate = 1D-myo-inositol 3-phosphate. This reaction requires NAD, which dehydrogenates the CHOH group to CO at C-5 of the glucose 6-phosphate, making C-6 into an active methylene, able to condense with the aldehyde at C-1. Finally, the enzyme-bound NADH reconverts C-5 into the CHOH form. tmpzr1t_l9r_go_relaxed.owl D-glucose 6-phosphate cycloaldolase activity|inositol 1-phosphate synthatase activity|glucose-6-phosphate inositol monophosphate cycloaldolase activity|glucose 6-phosphate cyclase activity|1L-myo-inositol-1-phosphate lyase (isomerizing)|glucocycloaldolase activity|inositol 1-phosphate synthetase activity KEGG_REACTION:R07324|MetaCyc:MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN|Reactome:R-HSA-1855178|RHEA:10716|EC:5.5.1.4 molecular_function owl:Class GO:0102144 biolink:NamedThing carboxyspermidine dehydrogenase II activity Catalysis of the reaction: carboxyspermidine + H2O + NADP <=> L-aspartic acid 4-semialdehyde betaine + 1,4-butanediammonium + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:34111|MetaCyc:RXN-11566 molecular_function owl:Class GO:0098715 biolink:NamedThing malonic acid import across plasma membrane The directed movement of malonic acid from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl malonic acid import into cell|malonate import into cell pr 2012-10-30T15:33:37Z GO:0097406 biological_process owl:Class GO:0040005 biolink:NamedThing chitin-based cuticle attachment to epithelium Attaching of a chitin-containing cuticle to the epithelium underlying it. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl cuticular attachment to epithelium biological_process owl:Class GO:0044728 biolink:NamedThing DNA methylation or demethylation The process of adding or removing a methyl group from one or more nucleotides within an DNA molecule. tmpzr1t_l9r_go_relaxed.owl changes in DNA methylation jl 2012-10-24T14:49:41Z biological_process owl:Class GO:1903970 biolink:NamedThing negative regulation of response to macrophage colony-stimulating factor Any process that stops, prevents or reduces the frequency, rate or extent of response to macrophage colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl down-regulation of response to M-CSF|downregulation of response to M-CSF|downregulation of response to macrophage colony-stimulating factor|negative regulation of response to macrophage colony-stimulating factor stimulus|negative regulation of response to M-CSF|down regulation of response to macrophage colony-stimulating factor stimulus|down regulation of response to M-CSF|down-regulation of response to macrophage colony-stimulating factor stimulus|inhibition of response to macrophage colony-stimulating factor|inhibition of response to M-CSF|down-regulation of response to macrophage colony-stimulating factor|downregulation of response to macrophage colony-stimulating factor stimulus|inhibition of response to macrophage colony-stimulating factor stimulus|down regulation of response to macrophage colony-stimulating factor nc 2015-03-02T14:41:08Z biological_process owl:Class GO:0008919 biolink:NamedThing lipopolysaccharide glucosyltransferase I activity Catalysis of the reaction: UDP-glucose + lipopolysaccharide = UDP + D-glucosyl-lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide glucosyltransferase activity|uridine diphosphoglucose-lipopolysaccharide glucosyltransferase activity|uridine diphosphate glucose:lipopolysaccharide glucosyltransferase I|UDP-glucose:lipopolysaccharide glucosyltransferase activity|UDPglucose:lipopolysaccharide glucosyltransferase activity|LPS glucosyltransferase I activity|UDPglucose:lipopolysaccharide glucosyltransferase I MetaCyc:2.4.1.58-RXN|EC:2.4.1.58 molecular_function owl:Class GO:0002810 biolink:NamedThing regulation of antifungal peptide biosynthetic process Any process that modulates the frequency, rate, or extent of antifungal peptide biosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030688 biolink:NamedThing preribosome, small subunit precursor A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl 43S preribosome Note that this complex is 43S in Saccharomyces. cellular_component owl:Class GO:0070770 biolink:NamedThing alphaIIb-beta3 integrin-CD47-FAK complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase FAK. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-CD47-FAK complex mah 2009-06-29T05:43:59Z cellular_component owl:Class GO:0045218 biolink:NamedThing zonula adherens maintenance Maintaining the zonula adherens junction, the cell-cell adherens junction formed near the apex of epithelial cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034846 biolink:NamedThing naphthyl-2-methylene-succinyl-CoA lyase activity Catalysis of the reaction: naphthyl-2-methylene-succinyl-CoA + H2O = naphthyl-2-hydroxymethyl-succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1259 molecular_function owl:Class GO:0050571 biolink:NamedThing 1,5-anhydro-D-fructose reductase activity Catalysis of the reaction: 1,5-anhydro-D-glucitol + NADP(+) = 1,5-anhydro-D-fructose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 1,5-anhydro-D-glucitol:NADP+ oxidoreductase activity|AF reductase activity EC:1.1.1.263|KEGG_REACTION:R05682|MetaCyc:1.1.1.263-RXN|RHEA:20665 molecular_function owl:Class GO:0003914 biolink:NamedThing DNA (6-4) photolyase activity Catalysis of the reaction: pyrimidine-pyrimidone (6-4) photoproduct (in DNA) = 2 pyrimidine residues (in DNA). Catalyzes the reactivation of ultraviolet-irradiated DNA. tmpzr1t_l9r_go_relaxed.owl EC:4.1.99.13|MetaCyc:RXN-10771 molecular_function owl:Class GO:0042706 biolink:NamedThing eye photoreceptor cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an eye photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043740 biolink:NamedThing GTP cyclohydrolase IIa activity Catalysis of the reaction: GTP + 3 H(2)O = 2-amino-5-formylamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate + 3 H(+) + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl GTP 8,9-dihydrolase (phosphate-forming)|GTP 8,9-hydrolase (phosphate-forming)|GTP cyclohydrolase III activity KEGG_REACTION:R07306|EC:3.5.4.29|MetaCyc:RXN-10055|RHEA:22468 molecular_function owl:Class GO:0018857 biolink:NamedThing 2,4-dichlorobenzoate-CoA ligase activity Catalysis of the reaction: 2,4-dichlorobenzoate + ATP + CoASH = AMP + diphosphate + 2,4-dichlorobenzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0137 molecular_function owl:Class GO:0061869 biolink:NamedThing regulation of hepatic stellate cell migration Any process that modulates the frequency, rate or extent of hepatic stellate cell migration. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:04:20Z biological_process owl:Class GO:0090613 biolink:NamedThing 5'-deoxyadenosine deaminase activity Catalysis of the reaction: 5'deoxyadenosine + H2O = 5'deoxyinosine + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.4.41|RHEA:42892 tb 2014-10-23T15:59:38Z molecular_function owl:Class GO:1902291 biolink:NamedThing cell cycle DNA replication DNA ligation Any DNA ligation that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA ligation involved in cell cycle DNA replication jl 2013-07-09T16:05:45Z biological_process owl:Class GO:0016643 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulphur protein as acceptor EC:1.4.7.- molecular_function owl:Class GO:0031624 biolink:NamedThing ubiquitin conjugating enzyme binding Binding to a ubiquitin conjugating enzyme, any of the E2 proteins. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044390 biolink:NamedThing ubiquitin-like protein conjugating enzyme binding Binding to a ubiquitin-like protein conjugating enzyme such as ubiquitin conjugating enzyme. tmpzr1t_l9r_go_relaxed.owl small protein conjugating enzyme binding|E2 protein ligase binding jl 2011-12-15T04:38:44Z molecular_function owl:Class GO:0046285 biolink:NamedThing flavonoid phytoalexin metabolic process The chemical reactions and pathways involving flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl flavonoid phytoalexin metabolism biological_process owl:Class GO:0035234 biolink:NamedThing ectopic germ cell programmed cell death Programmed cell death of an errant germ line cell that is outside the normal migratory path or ectopic to the gonad. This is an important mechanism of regulating germ cell survival within the embryo. tmpzr1t_l9r_go_relaxed.owl programmed cell death of ectopic germ cells|programmed cell death, ectopic germ cells biological_process owl:Class GO:0140432 biolink:NamedThing 5'-hydroxyl dinucleotide hydrolase Catalysis of the hydrolysis of phosphodiester bonds in 5'OH-RNA according to the reaction 5'OH-RNA + H20 = 5'OH-NpN (dinucleotide) + 5'P-RNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18881 pg 2020-02-19T05:50:35Z molecular_function owl:Class GO:0019280 biolink:NamedThing L-methionine biosynthetic process from homoserine via O-acetyl-L-homoserine and cystathionine The chemical reactions and pathways resulting in the formation of methionine from other compounds, including homoserine, via the intermediates O-acetyl-L-homoserine and cystathionine. tmpzr1t_l9r_go_relaxed.owl L-methionine synthesis from homoserine via O-acetyl-L-homoserine and cystathionine|L-methionine anabolism from homoserine via O-acetyl-L-homoserine and cystathionine|methionine biosynthetic process from homoserine via O-acetyl-L-homoserine and cystathionine|L-methionine formation from homoserine via O-acetyl-L-homoserine and cystathionine MetaCyc:HSERMETANA-PWY biological_process owl:Class GO:0045462 biolink:NamedThing trichothecene 3-O-acetyltransferase activity Catalysis of the 3-O-acetylation of a trichothecene. Trichothecenes are sesquiterpene epoxide mycotoxins that act as potent inhibitors of eukaryotic protein synthesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102162 biolink:NamedThing all-trans-8'-apo-beta-carotenal 15,15'-oxygenase Catalysis of the reaction: 8'-apo-beta,psi-caroten-8'-al + O2 <=> all-trans-retinal + 2,6-dimethylocta-2,4,6-trienedial. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11783|EC:1.13.11.75|RHEA:26385 molecular_function owl:Class GO:0052489 biolink:NamedThing negative regulation by host of symbiont programmed cell death Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of programmed cell death in a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down-regulation by host of symbiont programmed cell death|inhibition by host of symbiont programmed cell death|downregulation by host of symbiont programmed cell death|inhibition of symbiont programmed cell death|down regulation by host of symbiont programmed cell death biological_process owl:Class GO:1904258 biolink:NamedThing nuclear dicing body assembly The aggregation, arrangement and bonding together of a set of components to form a nuclear dicing body. tmpzr1t_l9r_go_relaxed.owl nuclear dicing body formation|D body formation|D body assembly lr 2015-05-20T20:48:07Z biological_process owl:Class GO:0043635 biolink:NamedThing methylnaphthalene catabolic process The chemical reactions and pathways resulting in the breakdown of methylnaphthalene, an organic compound, C10H7CH3, obtained from coal tar. tmpzr1t_l9r_go_relaxed.owl 1-methylnaphthalene catabolism|1-methylnaphthalene catabolic process|2-methylnaphthalene catabolism|1-MN catabolism|2-MN catabolism|2-MN catabolic process|1-MN catabolic process|2-methylnaphthalene catabolic process biological_process owl:Class GO:0015284 biolink:NamedThing fructose uniporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fructose(out) = fructose(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140201 biolink:NamedThing urea import across plasma membrane The directed movement of urea from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-20T10:15:45Z biological_process owl:Class GO:0036377 biolink:NamedThing arbuscular mycorrhizal association A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. tmpzr1t_l9r_go_relaxed.owl arbuscular mycorrhizal symbiosis|arbuscular mycorrhizas formation|arbuscular mycorrhizae formation bf 2013-05-07T15:07:32Z biological_process owl:Class GO:1904638 biolink:NamedThing response to resveratrol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a resveratrol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-31T17:07:38Z biological_process owl:Class GO:0035634 biolink:NamedThing response to stilbenoid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of exposure to a stilbenoid. Stilbenoids are secondary products of heartwood formation in trees that can act as phytoalexins. Stilbenoids are hydroxylated derivatives of stilbene. They belong to the family of phenylpropanoids and share most of their biosynthesis pathway with chalcones. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-12T10:37:33Z biological_process owl:Class GO:1905188 biolink:NamedThing positive regulation of metaphase/anaphase transition of meiosis I Any process that activates or increases the frequency, rate or extent of metaphase/anaphase transition of meiosis I. tmpzr1t_l9r_go_relaxed.owl positive regulation of meiosis I metaphase/anaphase transition vw 2016-05-10T16:32:19Z biological_process owl:Class GO:0047870 biolink:NamedThing discadenine synthase activity Catalysis of the reaction: N(6)-dimethylallyladenine + S-adenosyl-L-methionine(1+) = S-methyl-5'-thioadenosine + discadenine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:N6-(Delta2-isopentenyl)-adenine 3-(3-amino-3-carboxypropyl)-transferas|discadenine synthetase activity|S-adenosyl-L-methionine:6-N-(Delta2-isopentenyl)-adenine 3-(3-amino-3-carboxypropyl)-transferase activity KEGG_REACTION:R03726|RHEA:19581|MetaCyc:DISCADENINE-SYNTHASE-RXN|EC:2.5.1.24 molecular_function owl:Class GO:0035662 biolink:NamedThing Toll-like receptor 4 binding Binding to a Toll-like 4 protein, a pattern recognition receptor that binds bacterial lipopolysaccharide (LPS) to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl TLR4 binding bf 2011-02-01T10:20:59Z molecular_function owl:Class GO:0035325 biolink:NamedThing Toll-like receptor binding Binding to a Toll-like protein, a pattern recognition receptor that binds pattern motifs from a variety of microbial sources to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl TLR binding bf 2010-02-26T10:11:55Z molecular_function owl:Class GO:1905480 biolink:NamedThing positive regulation of glutamate-ammonia ligase activity Any process that activates or increases the frequency, rate or extent of glutamate-ammonia ligase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of glutamine synthetase activity|up regulation of glutamate-ammonia ligase activity|up-regulation of L-glutamine synthetase activity|activation of L-glutamine synthetase activity|activation of glutamine synthetase activity|up-regulation of L-glutamate:ammonia ligase (ADP-forming)|activation of glutamylhydroxamic synthetase activity|positive regulation of L-glutamate:ammonia ligase (ADP-forming)|up-regulation of glutamylhydroxamic synthetase activity|positive regulation of L-glutamine synthetase activity|activation of L-glutamate:ammonia ligase (ADP-forming)|upregulation of glutamate-ammonia ligase activity|up-regulation of glutamine synthetase activity|up regulation of glutamylhydroxamic synthetase activity|up-regulation of glutamate-ammonia ligase activity|upregulation of L-glutamine synthetase activity|up regulation of glutamine synthetase activity|up regulation of L-glutamine synthetase activity|upregulation of glutamylhydroxamic synthetase activity|positive regulation of glutamine synthetase activity|activation of glutamate-ammonia ligase activity|upregulation of L-glutamate:ammonia ligase (ADP-forming)|positive regulation of glutamylhydroxamic synthetase activity|up regulation of L-glutamate:ammonia ligase (ADP-forming) pga 2016-09-22T09:58:50Z biological_process owl:Class GO:0017045 biolink:NamedThing corticotropin-releasing hormone activity The action characteristic of corticotropin-releasing hormone (CRH), any of a number of peptides released by the mammalian hypothalamus into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, CRH increases the rate of corticotropin secretion by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl adrenocorticotropin-releasing hormone Wikipedia:Corticotropin-releasing_hormone molecular_function owl:Class GO:1990817 biolink:NamedThing RNA adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA, or oligo(A) bearing a 3'-OH terminal group. tmpzr1t_l9r_go_relaxed.owl vw 2015-07-31T09:38:31Z molecular_function owl:Class GO:0016077 biolink:NamedThing sno(s)RNA catabolic process The chemical reactions and pathways resulting in the breakdown of snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. tmpzr1t_l9r_go_relaxed.owl sno(s)RNA catabolism|sno(s)RNA breakdown|sno(s)RNA degradation|sRNA catabolic process|snoRNA catabolic process https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0098983 biolink:NamedThing symmetric, GABA-ergic, inhibitory synapse A neuron to neuron synapse that lacks an electron dense postsynaptic specialization, uses GABA as a neurotransmitter and whose activity results in inhibitory postsynaptic potentials. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990013 biolink:NamedThing presynaptic grid A hexagonal array of electron dense particles attached to the cytoplasmic face of the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl pre-synaptic grid NIF_Subcellular:sao1730664005 pr 2012-12-13T09:00:35Z cellular_component owl:Class GO:0009504 biolink:NamedThing cell plate The nascent cell membrane and cell wall structure that forms between two daughter nuclei near the center of a dividing plant cell. It develops at the equitorial region of the phragmoplast. It grows outwards to join with the lateral walls and form two daughter cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cell_plate cellular_component owl:Class GO:0021521 biolink:NamedThing ventral spinal cord interneuron specification The process in which a cell becomes capable of differentiating autonomously into a ventral spinal cord interneuron in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000389 biolink:NamedThing regulation of neutrophil extravasation Any process that modulates the frequency, rate or extent of neutrophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T11:07:58Z biological_process owl:Class GO:1902622 biolink:NamedThing regulation of neutrophil migration Any process that modulates the frequency, rate or extent of neutrophil migration. tmpzr1t_l9r_go_relaxed.owl sl 2014-01-15T18:58:39Z biological_process owl:Class GO:0071708 biolink:NamedThing immunoglobulin light chain V-J recombination The process in which immunoglobulin light chain V and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). tmpzr1t_l9r_go_relaxed.owl immunoglobulin V(D)J joining|immunoglobulin V(D)J recombination|immunoglobulin V-J joining mah 2010-03-09T04:22:29Z biological_process owl:Class GO:0033152 biolink:NamedThing immunoglobulin V(D)J recombination The process in which immunoglobulin gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). For immunoglobulin heavy chains V, D, and J gene segments are joined, and for immunoglobulin light chains V and J gene segments are joined. tmpzr1t_l9r_go_relaxed.owl immunoglobulin V-D-J recombination|immunoglobulin V-J recombination|immunoglobulin V-J joining|immunoglobulin V-D-J joining|immunoglobulin V(D)J joining biological_process owl:Class GO:1904951 biolink:NamedThing positive regulation of establishment of protein localization Any process that activates or increases the frequency, rate or extent of establishment of protein localization. tmpzr1t_l9r_go_relaxed.owl upregulation of establishment of protein localisation|upregulation of protein positioning|up-regulation of protein recruitment|activation of protein recruitment|up-regulation of establishment of protein localisation|activation of establishment of protein localisation|upregulation of establishment of protein localization|positive regulation of protein recruitment|activation of protein positioning|positive regulation of establishment of protein localisation|activation of establishment of protein localization|up regulation of establishment of protein localization|up regulation of protein recruitment|up-regulation of establishment of protein localization|positive regulation of protein positioning|up regulation of protein positioning|upregulation of protein recruitment|up-regulation of protein positioning|up regulation of establishment of protein localisation mec 2016-02-05T09:59:32Z biological_process owl:Class GO:0030209 biolink:NamedThing dermatan sulfate catabolic process The chemical reactions and pathways resulting in the breakdown of dermatan sulfate, any of a group of glycosaminoglycans with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate B catabolic process|dermatan sulphate catabolic process|dermatan sulfate catabolism|dermatan sulfate degradation|dermatan sulfate breakdown|dermatan sulphate catabolism|chondroitin sulfate B catabolism biological_process owl:Class GO:0018012 biolink:NamedThing N-terminal peptidyl-alanine trimethylation The trimethylation of the N-terminal alanine of proteins to form the derivative peptidyl-N,N,N-trimethyl-L-alanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0062 biological_process owl:Class GO:0018011 biolink:NamedThing N-terminal peptidyl-alanine methylation The methylation of the N-terminal alanine of proteins. tmpzr1t_l9r_go_relaxed.owl RESID:AA0061|RESID:AA0062 biological_process owl:Class GO:0039674 biolink:NamedThing exit of virus from host cell nucleus The directed movement of the viral genome or a viral particle out of the host cell nucleus. tmpzr1t_l9r_go_relaxed.owl VZ:2177 bf 2013-09-25T13:59:41Z biological_process owl:Class GO:0039018 biolink:NamedThing nephrostome development The process whose specific outcome is the progression of the nephrostome over time, from its formation to the mature structure. The nephrostome is the opening of the pronephros into the body cavity. tmpzr1t_l9r_go_relaxed.owl bf 2010-07-02T10:08:16Z biological_process owl:Class GO:0004310 biolink:NamedThing farnesyl-diphosphate farnesyltransferase activity Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. tmpzr1t_l9r_go_relaxed.owl farnesyl-diphosphate:farnesyl-diphosphate farnesyltransferase activity|presqualene synthase activity|presqualene-diphosphate synthase activity Reactome:R-HSA-191402|Reactome:R-HSA-191405|EC:2.5.1.21|MetaCyc:2.5.1.21-RXN Note that the two reactions performed by EC:2.5.1.21 are represented in GO by 'farnesyl-diphosphate farnesyltransferase activity ; GO:0004310' and 'squalene synthase activity ; GO:0051996'. molecular_function owl:Class GO:0002934 biolink:NamedThing desmosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm. tmpzr1t_l9r_go_relaxed.owl hjd 2012-05-08T02:59:08Z biological_process owl:Class GO:0022037 biolink:NamedThing metencephalon development The process whose specific outcome is the progression of the metencephalon over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006057 biolink:NamedThing mannoprotein biosynthetic process The chemical reactions and pathways resulting in the formation of a mannoprotein, a protein that contains covalently bound mannose residues. tmpzr1t_l9r_go_relaxed.owl mannoprotein anabolism|mannoprotein formation|mannoprotein biosynthesis|mannoprotein synthesis biological_process owl:Class GO:0008239 biolink:NamedThing dipeptidyl-peptidase activity Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 EC:3.4.14.5|EC:3.4.14.1|EC:3.4.14.4|EC:3.4.14.2 molecular_function owl:Class GO:0043916 biolink:NamedThing DNA-7-methylguanine glycosylase activity Catalysis of the reaction: DNA containing 7-methylguanine + H2O = DNA with abasic site + 7-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 7-methylguanine and the deoxyribose sugar to remove the 7-methylguanine, leaving an abasic site. tmpzr1t_l9r_go_relaxed.owl EC:3.2.2.21|MetaCyc:3.2.2.21-RXN molecular_function owl:Class GO:0030950 biolink:NamedThing establishment or maintenance of actin cytoskeleton polarity Any cellular process that results in the specification, formation or maintenance of polarized actin-based cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990102 biolink:NamedThing DnaA-DiaA complex A protein-DNA complex containing a tetramer of DiaA attached to multiple DnaA molecule bound to oriC DNA. Regulates timely initiation of chromosomal replication during the cell cycle by stimulating assembly of DnaA-oriC complexes, conformational changes in ATP-DnaA initiation complexes, and unwinding of oriC duplex DNA. tmpzr1t_l9r_go_relaxed.owl DnaA-DiaA-DNA complex bhm 2013-05-14T12:33:59Z cellular_component owl:Class GO:0061072 biolink:NamedThing iris morphogenesis The process in which the iris is generated and organized. The iris is an anatomical structure in the eye whose opening forms the pupil. The iris is responsible for controlling the diameter and size of the pupil and the amount of light reaching the retina. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-16T10:48:42Z biological_process owl:Class GO:0120182 biolink:NamedThing regulation of focal adhesion disassembly Any process that modulates the frequency, rate or extent of disaggregation of a focal adhesion into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-12T17:44:29Z biological_process owl:Class GO:0061275 biolink:NamedThing mesonephric proximal tubule development The progression of the mesonephric proximal tubule over time, from its formation to the mature structure. The mesonephric proximal tubule extends from the capsule to the distal tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-02T01:08:05Z biological_process owl:Class GO:1990873 biolink:NamedThing intrinsic component of plasma membrane of cell tip The component of the plasma membrane surrounding the cell tip consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the plasma membrane surrounding the cell tip or some other covalently attached group such as a GPI anchor that is similarly embedded in the plasma membrane surrounding the cell tip. tmpzr1t_l9r_go_relaxed.owl al 2015-09-29T10:06:25Z cellular_component owl:Class GO:0042978 biolink:NamedThing ornithine decarboxylase activator activity Binds to and increases ornithine decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl L-ornithine carboxy-lyase activator activity molecular_function owl:Class GO:0003213 biolink:NamedThing cardiac right atrium morphogenesis The process in which the right cardiac atrium is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:49:03Z biological_process owl:Class GO:0036382 biolink:NamedThing flavin reductase (NADH) activity Catalysis of the reaction: reduced flavin + NAD+ = flavin + NADH + H+. tmpzr1t_l9r_go_relaxed.owl flavin:NADH oxidoreductase activity|NADH-dependent flavin reductase activity RHEA:31303|MetaCyc:1.5.1.36-RXN|KEGG_REACTION:R09662|EC:1.5.1.36 bf 2013-05-23T11:23:09Z molecular_function owl:Class GO:1904378 biolink:NamedThing maintenance of unfolded protein involved in ERAD pathway Maintaining an endoplasmic reticulum (ER) protein in an unfolded, soluble state that contributes to its degradation by the cytoplasmic proteasome. Maintaining ER-resident proteins in an unfolded yet soluble state condition after their retro-translocation favors their turnover by the cytosolic proteasome. tmpzr1t_l9r_go_relaxed.owl ERAD chaperone-like activity|maintenance of unfolded protein during ERAD|maintenance of unfolded protein involved in endoplasmic reticulum-associated protein degradation pathway|maintenance of unfolded protein involved in ER-associated degradation pathway|chaperone holdase activity|maintenance of unfolded protein involved in endoplasmic reticulum-associated degradation|holdase activity bf 2015-06-23T09:21:53Z biological_process owl:Class GO:0036506 biolink:NamedThing maintenance of unfolded protein Maintaining a protein in an unfolded, soluble state. tmpzr1t_l9r_go_relaxed.owl bf 2015-06-11T10:17:36Z biological_process owl:Class GO:1905232 biolink:NamedThing cellular response to L-glutamate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-glutamate(1-) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to L-glutamate(1-) sl 2016-06-07T17:30:08Z biological_process owl:Class GO:1902065 biolink:NamedThing response to L-glutamate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-16T21:21:14Z biological_process owl:Class GO:1904583 biolink:NamedThing response to polyamine macromolecule Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polyamine macromolecule stimulus. tmpzr1t_l9r_go_relaxed.owl response to polyamine|response to polyamines sl 2015-08-20T14:35:26Z biological_process owl:Class GO:0010493 biolink:NamedThing Lewis a epitope biosynthetic process The chemical reactions and pathways resulting in the formation of a Lewis a epitope, a trisaccharide (Fuc-alpha-(1->4)[Gal-beta-(1->3)]GlcNAc) characteristic of plant protein N-linked oligosaccharides. tmpzr1t_l9r_go_relaxed.owl LE A biosynthetic process biological_process owl:Class GO:0103042 biolink:NamedThing 4-hydroxy-L-threonine aldolase activity Catalysis of the reaction: 4-hydroxy-L-threonine <=> glycolaldehyde + glycine. tmpzr1t_l9r_go_relaxed.owl RHEA:28779|MetaCyc:RXN0-6563 molecular_function owl:Class GO:1990273 biolink:NamedThing snRNA 5'-end processing Any process involved in forming the mature 5' end of an snRNA molecule. tmpzr1t_l9r_go_relaxed.owl al 2014-01-15T15:32:06Z biological_process owl:Class GO:0035382 biolink:NamedThing sterol transmembrane transport The process in which a sterol is transported across a membrane. Sterols are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl sterol membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-18T01:24:39Z biological_process owl:Class GO:1900741 biolink:NamedThing regulation of filamentous growth of a population of unicellular organisms in response to pH Any process that modulates the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to pH. tmpzr1t_l9r_go_relaxed.owl di 2012-05-28T02:34:39Z biological_process owl:Class GO:0043259 biolink:NamedThing laminin-10 complex A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-511 complex cellular_component owl:Class GO:0038156 biolink:NamedThing interleukin-3-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-3 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-3-mediated signalling pathway|IL-3-mediated signaling pathway bf 2012-05-11T11:50:42Z biological_process owl:Class GO:0043613 biolink:NamedThing isoprene catabolic process The chemical reactions and pathways resulting in the breakdown of isoprene, C5H8. tmpzr1t_l9r_go_relaxed.owl hemiterpene catabolism|2-methyl-1,3-butadiene catabolic process|hemiterpene catabolic process|2-methyl-1,3-butadiene catabolism biological_process owl:Class GO:0050552 biolink:NamedThing (4S)-limonene synthase activity Catalysis of the reaction: geranyl diphosphate = (4S)-limonene + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl-diphosphate diphosphate-lyase [cyclizing, (-)-(4S)-limonene-forming]|geranyldiphosphate diphosphate lyase (limonene forming)|geranyldiphosphate diphosphate lyase [cyclizing, (4S)-limonene-forming]|4S-(-)-limonene synthase activity|(-)-(4S)-limonene synthase activity MetaCyc:4.2.3.16-RXN|EC:4.2.3.16|RHEA:12869 molecular_function owl:Class GO:0120278 biolink:NamedThing negative regulation of cerebral blood circulation Any process that stops, prevents or reduces the frequency, rate or extent of cerebral blood circulation. tmpzr1t_l9r_go_relaxed.owl downregulation of cerebral blood circulation|negative regulation of cerebrum blood circulation|negative regulation of telencephalon blood circulation|down-regulation of cerebral blood circulation|inhibition of cerebral blood circulation|down regulation of cerebral blood circulation https://github.com/geneontology/go-ontology/issues/20107 krc 2020-10-21T07:02:05Z biological_process owl:Class GO:0021977 biolink:NamedThing tectospinal tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052814 biolink:NamedThing medium-chain-aldehyde dehydrogenase activity Catalysis of the reaction: a medium-chain aldehyde + NAD+ = a medium-chain carboxylate + NADH + H+. Medium-chain aldehydes have a chain length of between 8 and 12 carbons. tmpzr1t_l9r_go_relaxed.owl medium-chain aliphatic aldehyde dehydrogenase activity|medium-chain fatty aldehyde dehydrogenase activity|medium-chain-aldehyde:NAD+ oxidoreductase activity EC:1.2.1.- 2011-10-25T03:04:41Z molecular_function owl:Class GO:0008864 biolink:NamedThing formyltetrahydrofolate deformylase activity Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + formate + H(+). tmpzr1t_l9r_go_relaxed.owl formyltetrahydrofolate hydrolase activity|10-formyltetrahydrofolate amidohydrolase activity|formyl-FH(4) hydrolase activity RHEA:19833|EC:3.5.1.10|MetaCyc:FORMYLTHFDEFORMYL-RXN|KEGG_REACTION:R00944 molecular_function owl:Class GO:1902795 biolink:NamedThing siRNA-dependent facultative heterochromatin assembly The assembly of facultative heterochromatin to form a heterochromatin domain, enriched in histone H3 methylated on lysine 9 (H3K9me), by a process mediated by a small interfering RNA. tmpzr1t_l9r_go_relaxed.owl HOOD assembly|heterochromatin domain formation|HOOD formation|heterochromatin domain assembly https://github.com/geneontology/go-ontology/issues/22326 mah 2014-03-24T12:46:56Z biological_process owl:Class GO:1905836 biolink:NamedThing response to triterpenoid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triterpenoid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2017-01-17T19:37:36Z biological_process owl:Class GO:0016555 biolink:NamedThing uridine to cytidine editing The conversion of a uridine residue to cytosine in an RNA molecule by amination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016553 biolink:NamedThing base conversion or substitution editing Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s). tmpzr1t_l9r_go_relaxed.owl base conversion/substitution editing biological_process owl:Class GO:0033701 biolink:NamedThing dTDP-galactose 6-dehydrogenase activity Catalysis of the reaction: dTDP-D-galactose + 2 NADP+ + H2O = dTDP-D-galacturonate + 2 NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl dTDPgalactose 6-dehydrogenase activity|thymidine-diphosphate-galactose dehydrogenase activity|dTDP-D-galactose:NADP+ 6-oxidoreductase activity MetaCyc:DTDP-GALACTOSE-6-DEHYDROGENASE-RXN|RHEA:12396|EC:1.1.1.186 molecular_function owl:Class GO:0018878 biolink:NamedThing aerobic beta-1,2,3,4,5,6-hexachlorocyclohexane metabolic process The chemical reactions and pathways involving beta-1,2,3,4,5,6-hexachlorocyclohexane that occur in presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic beta-1,2,3,4,5,6-hexachlorocyclohexane metabolism biological_process owl:Class GO:0018877 biolink:NamedThing beta-1,2,3,4,5,6-hexachlorocyclohexane metabolic process The chemical reactions and pathways involving beta-1,2,3,4,5,6-hexachlorocyclohexane, a halogenated organic insecticide that has been used worldwide for agriculture and public health. tmpzr1t_l9r_go_relaxed.owl beta-1,2,3,4,5,6-hexachlorocyclohexane metabolism UM-BBD_pathwayID:hch biological_process owl:Class GO:0102720 biolink:NamedThing acetyl-coenzyme A:acetyl alcohol acetyltransferase activity Catalysis of the reaction: benzyl alcohol + acetyl-CoA = benzyl acetate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl RHEA:36147|MetaCyc:RXN-6762|EC:2.3.1.224 molecular_function owl:Class GO:0071271 biolink:NamedThing 1-butanol biosynthetic process The chemical reactions and pathways resulting in the formation of 1-butanol, an alkyl primary alcohol with the formula C4H10O. tmpzr1t_l9r_go_relaxed.owl butanol biosynthetic process|1-butanol biosynthesis|butan-1-ol biosynthetic process|1-butanol anabolism|1-butanol formation|1-butanol synthesis mah 2009-12-10T10:27:24Z biological_process owl:Class GO:0050227 biolink:NamedThing pteridine oxidase activity Catalysis of the reaction: 2-amino-4-hydroxypteridine + O2 = 2-amino-4,7-dihydroxypteridine + unknown. tmpzr1t_l9r_go_relaxed.owl 2-amino-4-hydroxypteridine:oxygen oxidoreductase (7-hydroxylating) EC:1.17.3.1|MetaCyc:PTERIDINE-OXIDASE-RXN|RHEA:12777 molecular_function owl:Class GO:0102852 biolink:NamedThing 1-18:3-2-16:0-phosphatidylglycerol desaturase activity Catalysis of the reaction: 1-18:3-2-16:0-phosphatidylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8319 molecular_function owl:Class GO:0060707 biolink:NamedThing trophoblast giant cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a trophoblast giant cell of the placenta. Trophoblast giant cells are the cell of the placenta that line the maternal decidua. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T10:32:12Z biological_process owl:Class GO:0002487 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class I via endolysosomal pathway The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in an endolysosome. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class I via endolysosomal pathway biological_process owl:Class GO:0003436 biolink:NamedThing regulation of cell adhesion involved in growth plate cartilage morphogenesis Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix and contributes to the shaping of the growth plate cartilage of an endochondral bone. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T01:28:15Z biological_process owl:Class GO:0035503 biolink:NamedThing ureter part of ureteric bud development The development of the portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-29T03:23:42Z biological_process owl:Class GO:0010144 biolink:NamedThing pyridoxal phosphate biosynthetic process from pyridoxamine The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, the active form of vitamin B6, from pyridoxamine. tmpzr1t_l9r_go_relaxed.owl vitamin B6 biosynthesis from pyridoxamine|pyridoxal 5'-phosphate salvage from pyridoxamine|pyridoxal phosphate anabolism from pyridoxamine|pyridoxal phosphate synthesis from pyridoxamine|vitamin B6 biosynthetic process from pyridoxamine|pyridoxal phosphate formation from pyridoxamine biological_process owl:Class GO:1990263 biolink:NamedThing spore wall assembly MAPK cascade A MAPK cascade that occurs as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl MAPK cascade involved in nutrient response signaling|MAPK cascade in response to starvation al 2014-01-09T12:27:52Z biological_process owl:Class GO:0075322 biolink:NamedThing regulation of oomycete sporangium development Any process that modulates the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903001 biolink:NamedThing negative regulation of lipid transport across blood-brain barrier Any process that stops, prevents or reduces the frequency, rate or extent of lipid transport across blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl negative regulation of lipid transport across blood brain barrier|downregulation of lipid transport across blood brain barrier|down regulation of lipid transport across blood brain barrier|down-regulation of lipid transport across blood brain barrier|inhibition of lipid transport across blood brain barrier sjp 2014-05-09T09:30:10Z biological_process owl:Class GO:0005744 biolink:NamedThing TIM23 mitochondrial import inner membrane translocase complex The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor. tmpzr1t_l9r_go_relaxed.owl mitochondrial inner membrane translocase complex|Tim23 complex|mitochondrial inner membrane presequence translocase complex|mitochondrial inner membrane pre-sequence translocase complex See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'. cellular_component owl:Class GO:0033345 biolink:NamedThing asparagine catabolic process via L-aspartate The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-aspartate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ASPARAGINE-DEG1-PWY biological_process owl:Class GO:1901008 biolink:NamedThing (S)-scoulerine catabolic process The chemical reactions and pathways resulting in the breakdown of (S)-scoulerine. tmpzr1t_l9r_go_relaxed.owl (S)-scoulerine catabolism|(S)-scoulerine degradation|(S)-scoulerine breakdown yaf 2012-06-15T10:46:10Z biological_process owl:Class GO:1901007 biolink:NamedThing (S)-scoulerine metabolic process The chemical reactions and pathways involving (S)-scoulerine. tmpzr1t_l9r_go_relaxed.owl (S)-scoulerine metabolism yaf 2012-06-15T10:45:48Z biological_process owl:Class GO:0075522 biolink:NamedThing IRES-dependent viral translational initiation Process by which viral mRNA translation is initiated, where a domain in the 5' untranslated region (UTR) of the viral mRNA called an internal ribosome entry site (IRES) binds the host 43S preinitiation complex, circumventing regular cap-dependent translation initiation. tmpzr1t_l9r_go_relaxed.owl VZ:867 jl 2011-08-03T02:25:03Z biological_process owl:Class GO:0061525 biolink:NamedThing hindgut development The process whose specific outcome is the progression of the hindgut over time, from its formation to the mature structure. The hindgut is part of the alimentary canal that lies posterior to the midgut. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-14T11:22:21Z biological_process owl:Class GO:0101011 biolink:NamedThing inositol 1-diphosphate 2,3,4,5,6-pentakisphosphate 1-diphosphatase activity Catalysis of the reaction: myo-inositol 1-diphosphate 2,3,4,5,6-pentakisphosphate + H2O = myo-inositol hexakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol 1-pyrophosphate 2,3,4,5,6-pentakisphosphate 1-pyrophosphatase activity molecular_function owl:Class GO:0072746 biolink:NamedThing cellular response to tetracycline Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetracycline stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:32:43Z biological_process owl:Class GO:0004821 biolink:NamedThing histidine-tRNA ligase activity Catalysis of the reaction: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His). tmpzr1t_l9r_go_relaxed.owl histidyl-transfer ribonucleate synthetase activity|histidine translase activity|histidyl-tRNA synthetase activity|L-histidine:tRNAHis ligase (AMP-forming) RHEA:17313|Reactome:R-HSA-380234|MetaCyc:HISTIDINE--TRNA-LIGASE-RXN|Reactome:R-HSA-379844|EC:6.1.1.21 molecular_function owl:Class GO:0021641 biolink:NamedThing trochlear nerve structural organization The process that contributes to the act of creating the structural organization of the trochlear nerve. This process pertains to the physical shaping of a rudimentary structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle. tmpzr1t_l9r_go_relaxed.owl trochlear nerve structural organisation|CN IV structural organization biological_process owl:Class GO:0018295 biolink:NamedThing protein-FAD linkage via 3'-(8alpha-FAD)-L-histidine The formation of a protein-FAD linkage via 3'-(8-alpha-FAD)-L-histidine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0144 biological_process owl:Class GO:0016072 biolink:NamedThing rRNA metabolic process The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. tmpzr1t_l9r_go_relaxed.owl rRNA metabolism biological_process owl:Class GO:0048386 biolink:NamedThing positive regulation of retinoic acid receptor signaling pathway Any process that activates or increases the frequency, rate or extent of retinoic acid receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of retinoic acid receptor signalling pathway|activation of retinoic acid receptor signaling pathway|stimulation of retinoic acid receptor signaling pathway|upregulation of retinoic acid receptor signaling pathway|up-regulation of retinoic acid receptor signaling pathway|positive regulation of RAR signaling pathway|up regulation of retinoic acid receptor signaling pathway biological_process owl:Class GO:0008349 biolink:NamedThing MAP kinase kinase kinase kinase activity Catalysis of the phosphorylation of serine and threonine residues in a mitogen-activated protein kinase kinase kinase (MAPKKK), resulting in activation of MAPKKK. MAPKKK signaling pathways relay, amplify and integrate signals from the plasma membrane to the nucleus in response to a diverse range of extracellular stimuli. tmpzr1t_l9r_go_relaxed.owl MAP4K activity|MAPKKKK Reactome:R-HSA-177692|Reactome:R-HSA-9645442|Reactome:R-HSA-936991 molecular_function owl:Class GO:0048294 biolink:NamedThing negative regulation of isotype switching to IgE isotypes Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching to IgE isotypes. tmpzr1t_l9r_go_relaxed.owl down regulation of isotype switching to IgE isotypes|down-regulation of isotype switching to IgE isotypes|inhibition of isotype switching to IgE isotypes|negative regulation of isotype switch recombination to IgE isotypes|negative regulation of class switching to IgE isotypes|negative regulation of class switch recombination to IgE isotypes|downregulation of isotype switching to IgE isotypes biological_process owl:Class GO:0042550 biolink:NamedThing photosystem I stabilization The stabilization of the photosystem I protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052907 biolink:NamedThing 23S rRNA (adenine(1618)-N(6))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. tmpzr1t_l9r_go_relaxed.owl M(6)A(1618) activity|rRNA large subunit methyltransferase F activity KEGG_REACTION:R07232|EC:2.1.1.181|RHEA:16497|MetaCyc:RXN-11596 molecular_function owl:Class GO:0061414 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source A transcription regulation process in which the presence of a nonfermentable carbon source leads to an increase of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T11:31:27Z biological_process owl:Class GO:0075185 biolink:NamedThing positive regulation of infection cushion formation Any process that activates or increases the frequency, rate or extent of symbiont infection cushion formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of infection cushion formation on or near host biological_process owl:Class GO:0015920 biolink:NamedThing lipopolysaccharide transport The directed movement of lipopolysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl LPS transport biological_process owl:Class GO:0000225 biolink:NamedThing N-acetylglucosaminylphosphatidylinositol deacetylase activity Catalysis of the reaction: N-acetyl-D-glucosaminylphosphatidylinositol + H2O = D-glucosaminylphosphatidylinositol + acetate. This reaction is the second step of the biosynthesis of glycosylphosphatidylinositol (GPI), used to anchor various eukaryotic proteins to the cell-surface membrane. tmpzr1t_l9r_go_relaxed.owl acetylglucosaminylphosphatidylinositol deacetylase activity|GlcNAc-PI deacetylase activity|GlcNAc-PI de-N-acetylase activity|6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol acetylhydrolase activity|N-acetylglucosaminylphosphatidylinositol de-N-acetylase activity|N-acetyl-D-glucosaminylphosphatidylinositol acetylhydrolase activity RHEA:11660|Reactome:R-HSA-162857|EC:3.5.1.89|MetaCyc:3.1.1.69-RXN Note that this function was formerly EC:3.1.1.69. molecular_function owl:Class GO:0045109 biolink:NamedThing intermediate filament organization Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking. tmpzr1t_l9r_go_relaxed.owl intermediate filament organisation biological_process owl:Class GO:0018360 biolink:NamedThing protein-heme P460 linkage via heme P460-bis-L-cysteine-L-lysine The linkage of protein to heme P460 via heme P460-bis-L-cysteine-L-lysine. tmpzr1t_l9r_go_relaxed.owl protein-haem P460 linkage via haem P460-bis-L-cysteine-L-lysine RESID:AA0271 GO:0018384 biological_process owl:Class GO:0018174 biolink:NamedThing protein-heme P460 linkage The linkage of protein to heme P460. tmpzr1t_l9r_go_relaxed.owl protein-haem P460 linkage RESID:AA0266|RESID:AA0271 biological_process owl:Class GO:2000085 biolink:NamedThing negative regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis Any process that stops, prevents, or reduces the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis. tmpzr1t_l9r_go_relaxed.owl negative regulation of mesonephric mesenchyme to epithelial transition dph 2010-09-03T06:08:21Z biological_process owl:Class GO:1902300 biolink:NamedThing galactarate transmembrane transport The process in which galactaric acid anion (galactarate) is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl galactarate transport|D-galactarate transport|galactaric acid anion transport pr 2013-07-16T07:11:45Z GO:0042871 biological_process owl:Class GO:0047760 biolink:NamedThing butyrate-CoA ligase activity Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA. tmpzr1t_l9r_go_relaxed.owl acyl-activating enzyme activity|fatty acyl coenzyme A synthetase activity|medium chain acyl-CoA synthetase activity|short-chain acyl-CoA synthetase activity|butanoate:CoA ligase (AMP-forming)|fatty acid thiokinase (medium chain) activity|butyryl-coenzyme A synthetase activity|butyryl-CoA synthetase activity|L-(+)-3-hydroxybutyryl CoA ligase activity|fatty acid activating enzyme Reactome:R-HSA-8875013|EC:6.2.1.2|MetaCyc:BUTYRATE--COA-LIGASE-RXN|RHEA:24336 molecular_function owl:Class GO:2000520 biolink:NamedThing regulation of immunological synapse formation Any process that modulates the frequency, rate or extent of immunological synapse formation. tmpzr1t_l9r_go_relaxed.owl regulation of formation of immunological synapse ebc 2011-03-23T10:18:14Z biological_process owl:Class GO:0140121 biolink:NamedThing Lewy body formation The aggregation, arrangement and bonding together of a set of components to form a Lewy body. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14160 pg 2017-10-25T06:59:12Z biological_process owl:Class GO:1901878 biolink:NamedThing positive regulation of calcium ion binding Any process that activates or increases the frequency, rate or extent of calcium ion binding. tmpzr1t_l9r_go_relaxed.owl activation of calcium ion storage activity|upregulation of calcium ion binding|upregulation of calcium ion storage activity|up-regulation of calcium ion binding|up regulation of calcium ion binding|up-regulation of calcium ion storage activity|up regulation of calcium ion storage activity|activation of calcium ion binding|positive regulation of calcium ion storage activity rl 2013-02-06T12:38:26Z biological_process owl:Class GO:2000471 biolink:NamedThing regulation of hematopoietic stem cell migration Any process that modulates the frequency, rate or extent of hematopoietic stem cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of hemopoietic stem cell migration bf 2011-03-09T09:34:08Z biological_process owl:Class GO:0014855 biolink:NamedThing striated muscle cell proliferation The multiplication or reproduction of striated muscle cells, resulting in the expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033002 biolink:NamedThing muscle cell proliferation The expansion of a muscle cell population by cell division. tmpzr1t_l9r_go_relaxed.owl myocyte proliferation biological_process owl:Class GO:1903443 biolink:NamedThing cellular response to lipoic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl jl 2014-09-17T13:52:12Z biological_process owl:Class GO:0001567 biolink:NamedThing cholesterol 25-hydroxylase activity Catalysis of the reaction: AH(2) + cholesterol + O(2) = 25-hydroxycholesterol + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl cholesterol,hydrogen-donor:oxygen oxidoreductase (25-hydroxylating) activity|cholesterol 25-monooxygenase activity MetaCyc:1.14.99.38-RXN|RHEA:21104|EC:1.14.99.38|KEGG_REACTION:R07218 molecular_function owl:Class GO:0022610 biolink:NamedThing biological adhesion The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090678 biolink:NamedThing cell dedifferentiation involved in phenotypic switching A cell dedifferentiation process that is a part of a reversible switch of a cell from one cell type or form to another, at a frequency above the expected frequency for somatic mutations. tmpzr1t_l9r_go_relaxed.owl tb 2016-04-28T17:32:40Z biological_process owl:Class GO:0034193 biolink:NamedThing L-galactonate metabolic process The chemical reactions and pathways involving L-galactonate, the anion of L-galactonic acid. tmpzr1t_l9r_go_relaxed.owl L-galactonate metabolism biological_process owl:Class GO:0070318 biolink:NamedThing positive regulation of G0 to G1 transition A cell cycle process that activates or increases the rate or extent of the transition from the G0 quiescent state to the G1 phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036056 biolink:NamedThing filtration diaphragm A specialized cell-cell junction found between the cells of the excretory system, which provides a barrier for filtration of blood or hemolymph. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T04:36:05Z cellular_component owl:Class GO:0044302 biolink:NamedThing dentate gyrus mossy fiber Distinctive, unmyelinated axons produced by granule cells. tmpzr1t_l9r_go_relaxed.owl dentate gyrus mossy fibre|granule cell axon NIF_Subcellular:nlx_subcell_20090601 jl 2010-02-05T11:23:55Z cellular_component owl:Class GO:0002399 biolink:NamedThing MHC class II protein complex assembly The aggregation, arrangement and bonding together of a set of components to form an MHC class II protein complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075109 biolink:NamedThing modulation by symbiont of host receptor-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of receptor-mediated signal transduction in the host organism. The receptor is defined as a protein on the cell membrane or within the cytoplasm or cell nucleus that binds to a specific molecule (a ligand) such as a neurotransmitter or a hormone or other substance, and initiates the cellular response to the ligand. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont receptor-mediated signal transduction ; GO:0075078". biological_process owl:Class GO:0062232 biolink:NamedThing prostanoid catabolic process The chemical reactions and pathways resulting in the breakdown of prostanoids. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-23T15:17:02Z biological_process owl:Class GO:0106375 biolink:NamedThing deoxynucleoside triphosphate hydrolase activity Catalysis of the reaction: dNTP + H2O = 2'-deoxynucleoside + H+ + triphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:46148 hjd 2021-04-15T20:44:33Z molecular_function owl:Class GO:0039697 biolink:NamedThing negative stranded viral RNA transcription A viral transcription process that uses negative stranded (-) single stranded (ss) RNA as a template. tmpzr1t_l9r_go_relaxed.owl VZ:1096 bf 2013-10-28T14:41:41Z biological_process owl:Class GO:0140292 biolink:NamedThing ADP-ribosylserine hydrolase activity Catalysis of the reaction: (ADP-D-ribosyl)-L-seryl-[protein] + H2O = L-seryl-[protein] + ADP-ribose. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T14:35:39Z molecular_function owl:Class GO:1905680 biolink:NamedThing regulation of innate immunity memory response Any process that modulates the frequency, rate or extent of innate immunity memory response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T22:25:21Z biological_process owl:Class GO:0045569 biolink:NamedThing TRAIL binding Binding to TRAIL (TNF-related apoptosis inducing ligand), a member of the tumor necrosis factor ligand family that rapidly induces apoptosis in a variety of transformed cell lines. tmpzr1t_l9r_go_relaxed.owl Apo-2L binding molecular_function owl:Class GO:0042599 biolink:NamedThing lamellar body A membrane-bounded organelle, specialized for the storage and secretion of various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome. tmpzr1t_l9r_go_relaxed.owl keratinosome|membrane-coating granule|lamellar granule|Odland body NIF_Subcellular:sao1379604862 cellular_component owl:Class GO:0102335 biolink:NamedThing N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP-N-acetyl-D-galactosamine <=> N-acetyl-D-galactosaminyl-alpha-(1->3)-N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13274|EC:2.4.1.290|RHEA:34511 molecular_function owl:Class GO:0006666 biolink:NamedThing 3-keto-sphinganine metabolic process The chemical reactions and pathways involving 3-keto-sphinganine, a derivative of sphinganine with a ketone group at C3. It is an intermediate in the synthesis of sphingosine. tmpzr1t_l9r_go_relaxed.owl 3-keto-dihydrosphingosine metabolism|3-keto-dihydrosphingosine metabolic process|3-keto-sphinganine metabolism biological_process owl:Class GO:0102605 biolink:NamedThing cyclooctat-9-en-5,7-diol C18-monooxygenase activity Catalysis of the reaction: cyclooctat-9-en-5,7-diol + O2 + NADPH + H+ <=> cyclooctatin + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15430|RHEA:56824 molecular_function owl:Class GO:0006842 biolink:NamedThing tricarboxylic acid transport The directed movement of tricarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000822 biolink:NamedThing inositol hexakisphosphate binding Binding to inositol hexakisphosphate. tmpzr1t_l9r_go_relaxed.owl IP6 binding|InsP6 binding molecular_function owl:Class GO:1905286 biolink:NamedThing serine-type peptidase complex A protein complex which is capable of serine-type peptidase activity. tmpzr1t_l9r_go_relaxed.owl Factor VII - TF complex An example of this is F7 in human (P08709) in PMID:18640965 (inferred from direct assay). bhm 2016-06-21T14:20:20Z cellular_component owl:Class GO:0102379 biolink:NamedThing steviolbioside glucosyltransferase activity (stevioside forming) Catalysis of the reaction: steviolbioside + UDP-alpha-D-glucose = stevioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13514 molecular_function owl:Class GO:0072502 biolink:NamedThing cellular trivalent inorganic anion homeostasis Any process involved in the maintenance of an internal steady state of trivalent inorganic anions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term was split from 'cellular di-, tri-valent inorganic anion homeostasis ; GO:0030319' (sibling term 'cellular divalent inorganic anion homeostasis' ; GO:0072501'). mah 2010-12-16T12:53:42Z biological_process owl:Class GO:0038160 biolink:NamedThing CXCL12-activated CXCR4 signaling pathway A series of molecular signals initiated by the binding of the C-X-C chemokine CXCL12 to a C-X-C chemokine type 4 receptor (CXCR4) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CXCL12-activated CXCR4 signalling pathway bf 2012-05-14T01:33:17Z biological_process owl:Class GO:0039632 biolink:NamedThing RNA translocase activity involved in viral RNA genome packaging Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded RNA molecule, which contributes to the packaging of viral RNA into a nucleocapsid. tmpzr1t_l9r_go_relaxed.owl RNA packaging ATPase activity|viral RNA packaging activity bf 2012-08-07T11:20:53Z molecular_function owl:Class GO:0039630 biolink:NamedThing RNA translocase activity Generating a movement along a single- or double-stranded RNA molecule, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21612 Note that some gene products that possess DNA translocase activity, such as members of the FtsK/SpoIIIE family, can be fixed in place by interactions with other components of the cell; the relative movement between the protein and DNA bound to it results in movement of the DNA within the cell, often across a membrane. bf 2012-08-06T13:24:51Z molecular_function owl:Class GO:0048926 biolink:NamedThing electrosensory lateral line system development The process whose specific outcome is the progression of the electrosensory lateral line system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006660 biolink:NamedThing phosphatidylserine catabolic process The chemical reactions and pathways resulting in the breakdown of phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine degradation|phosphatidylserine breakdown|phosphatidylserine catabolism biological_process owl:Class GO:0075283 biolink:NamedThing sporulation resulting in formation of a multicellular or syncytial spore The process whose specific outcome is the progression of a multicellular or syncytial spore via septations over time, from its initiation to the mature structure. tmpzr1t_l9r_go_relaxed.owl multicellular or syncytial spore formation by sporulation biological_process owl:Class GO:1990526 biolink:NamedThing Ste12p-Dig1p-Dig2p complex A multiprotein complex that is involved in the transcription regulation of mating genes in the yeast S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl rb 2014-11-05T22:49:32Z cellular_component owl:Class GO:0032170 biolink:NamedThing pseudohyphal septin ring A tight ring-shaped structure that forms in the division plane at the junction between the mother cell and a pseudohyphal projection; composed of septins as well as septin-associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048882 biolink:NamedThing lateral line development The process whose specific outcome is the progression of the lateral line over time, from its formation to the mature structure. The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear. tmpzr1t_l9r_go_relaxed.owl LL development biological_process owl:Class GO:0070629 biolink:NamedThing (1->4)-alpha-glucan metabolic process The chemical reactions and pathways involving (1->4)-alpha-glucans, compounds composed of glucose residues linked by (1->4)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl alpha-1,4 glucan metabolic process|1,4-alpha-D-glucan metabolism|(1->4)-alpha-D-glucan metabolism|1,4-alpha-glucan metabolism|alpha-1,4 glucan metabolism mah 2009-05-01T04:45:42Z biological_process owl:Class GO:0034590 biolink:NamedThing L-hydroxyproline transmembrane transporter activity Enables the transfer of L-hydroxyproline from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyproline transmembrane transporter activity Reactome:R-HSA-6784213 molecular_function owl:Class GO:1990722 biolink:NamedThing DAPK1-calmodulin complex A serine/threonine protein kinase complex involved in cell survival, apoptosis and autophagic cell death pathways. DAPK1 is activated by the dephosphorylation of a n-terminal serine and calcium-calmodulin binding. tmpzr1t_l9r_go_relaxed.owl death-associated protein kinase 1 - calmodulin complex bhm 2015-04-01T13:05:17Z cellular_component owl:Class GO:0033785 biolink:NamedThing heptose 7-phosphate kinase activity Catalysis of the reaction: D-alpha,beta-D-heptose-7-phosphate + ATP = D-beta-D-heptose-1,7-bisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl D-alpha,beta-D-heptose 7-phosphate 1-kinase activity RHEA:27473|MetaCyc:RXN0-4341|EC:2.7.1.167 molecular_function owl:Class GO:0048618 biolink:NamedThing post-embryonic foregut morphogenesis The process in which the anatomical structures of the foregut are generated and organized, during the post-embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004933 biolink:NamedThing mating-type a-factor pheromone receptor activity Combining with the mating-type a-factor pheromone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl class D G-protein coupled receptor activity|class D GPCR activity|class D G protein coupled receptor activity|class D G-protein-coupled receptor activity molecular_function owl:Class GO:0031548 biolink:NamedThing regulation of brain-derived neurotrophic factor receptor signaling pathway Any process that modulates the frequency, rate or extent of signaling via the brain-derived neurotrophic factor receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of BDNF receptor signaling pathway|regulation of brain-derived neurotrophic factor receptor signalling pathway|regulation of BDNF receptor signalling pathway biological_process owl:Class GO:0090374 biolink:NamedThing oligopeptide export from mitochondrion The process in which an oligopeptide is transported out of the mitochondrial matrix. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-27T04:38:18Z biological_process owl:Class GO:0050502 biolink:NamedThing cis-zeatin O-beta-D-glucosyltransferase activity Catalysis of the reaction: cis-zeatin + UDP-D-glucose = O-beta-D-glucosyl-cis-zeatin + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl cis-zeatin O-b-D-glucosyltransferase activity|UDPglucose:cis-zeatin O-beta-D-glucosyltransferase activity|UDP-glucose:cis-zeatin O-beta-D-glucosyltransferase activity MetaCyc:RXN-4735|EC:2.4.1.215|KEGG_REACTION:R07260|RHEA:20681 molecular_function owl:Class GO:0009859 biolink:NamedThing pollen hydration The process in which water is taken up by pollen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006833 biolink:NamedThing water transport The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033356 biolink:NamedThing UDP-L-arabinose metabolic process The chemical reactions and pathways involving UDP-L-arabinose, uridinediphosphoarabinose, a substance composed of arabinose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-L-arabinose metabolism biological_process owl:Class GO:0000488 biolink:NamedThing maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990387 biolink:NamedThing isogloboside biosynthetic process The chemical reactions and pathways resulting in the formation of a lactosyl-ceramide derivative in which a galactose is linked to the galactose via an alpha 1,3 linkage (vs alpha 1,4 for globosides). tmpzr1t_l9r_go_relaxed.owl hjd 2014-05-30T17:36:51Z biological_process owl:Class GO:2001281 biolink:NamedThing regulation of muscle cell chemotaxis toward tendon cell Any process that modulates the frequency, rate or extent of muscle cell chemotaxis toward tendon cell. tmpzr1t_l9r_go_relaxed.owl regulation of muscle cell chemotaxis towards tendon cell|regulation of muscle cell attraction bf 2011-12-15T10:39:36Z biological_process owl:Class GO:0006526 biolink:NamedThing arginine biosynthetic process The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl arginine biosynthesis|arginine formation|arginine anabolism|arginine synthesis MetaCyc:ARGSYN-PWY|MetaCyc:ARGININE-SYN4-PWY|MetaCyc:ARGSYNBSUB-PWY biological_process owl:Class GO:0086022 biolink:NamedThing SA node cell-atrial cardiac muscle cell adhesion involved in cell communication The attachment of SA node cardiomyocyte to an atrial cardiomyocyte via adhesion molecules that results in the cells being juxtaposed so that they can communicate. tmpzr1t_l9r_go_relaxed.owl SA cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication|sinoatrial node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication|SAN cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication|SA cardiac muscle cell-atrial cardiac muscle cell adhesion involved in cell communication|sinus node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication tb 2011-11-10T09:26:52Z biological_process owl:Class GO:0070213 biolink:NamedThing protein auto-ADP-ribosylation The ADP-ribosylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid auto-ADP-ribosylation biological_process owl:Class GO:0006641 biolink:NamedThing triglyceride metabolic process The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins. tmpzr1t_l9r_go_relaxed.owl triacylglycerol metabolism|triglyceride metabolism|triacylglycerol metabolic process biological_process owl:Class GO:0045584 biolink:NamedThing negative regulation of cytotoxic T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of cytotoxic T cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytotoxic T cell development|negative regulation of cytotoxic T lymphocyte differentiation|negative regulation of cytotoxic T-cell differentiation|down regulation of cytotoxic T cell differentiation|downregulation of cytotoxic T cell differentiation|negative regulation of cytotoxic T-lymphocyte differentiation|down-regulation of cytotoxic T cell differentiation|inhibition of cytotoxic T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0005260 biolink:NamedThing intracellularly ATP-gated chloride channel activity Enables passage of a chloride ion through a transmembrane channel that opens when ATP is bound by the channel complex or one of its constituent parts on the intracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|cystic fibrosis transmembrane conductance regulator|ATP phosphohydrolase (channel-conductance-controlling)|cystic-fibrosis membrane-conductance-regulating protein activity https://github.com/geneontology/go-ontology/issues/14402 EC:5.6.1.6|MetaCyc:3.6.3.49-RXN GO:0005224 molecular_function owl:Class GO:0070280 biolink:NamedThing pyridoxal binding Binding to pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde, a form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902466 biolink:NamedThing positive regulation of histone H3-K27 trimethylation Any process that activates or increases the frequency, rate or extent of histone H3-K27 trimethylation. tmpzr1t_l9r_go_relaxed.owl upregulation of histone H3-K27 trimethylation|up-regulation of histone H3-K27 trimethylation|up regulation of histone H3-K27 trimethylation|activation of histone H3-K27 trimethylation krc 2013-10-22T14:59:19Z biological_process owl:Class GO:0019864 biolink:NamedThing IgG binding Binding to an immunoglobulin of an IgG isotype. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047213 biolink:NamedThing anthocyanidin 3-O-glucosyltransferase activity Catalysis of the reaction: anthocyanidin + UDP-D-glucose = anthocyanidin-3-O-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl 3-GT activity|UDP-glucose:anthocyanidin/flavonol 3-O-glucosyltransferase activity|uridine diphosphoglucose-anthocyanidin 3-O-glucosyltransferase activity|UDP-glucose:anthocyanidin 3-O-D-glucosyltransferase activity|UDP-glucose:cyanidin-3-O-glucosyltransferase activity|UDP-D-glucose:anthocyanidin 3-O-beta-D-glucosyltransferase activity EC:2.4.1.115|RHEA:20093|MetaCyc:2.4.1.115-RXN molecular_function owl:Class GO:0097131 biolink:NamedThing cyclin D1-CDK6 complex A protein complex consisting of cyclin D1 and cyclin-dependent kinase 6 (CDK6). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:55:26Z cellular_component owl:Class GO:0080032 biolink:NamedThing methyl jasmonate esterase activity Catalysis of the reaction: a methyl jasmonate + H2O = a jasmonic acid + methanol. tmpzr1t_l9r_go_relaxed.owl methyl JA esterase activity|jasmonic acid methyl ester esterase activity|MEJA esterase activity MetaCyc:RXN-10767 molecular_function owl:Class GO:0004817 biolink:NamedThing cysteine-tRNA ligase activity Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). tmpzr1t_l9r_go_relaxed.owl cysteinyl-transferRNA synthetase activity|cysteinyl-transfer ribonucleate synthetase activity|cysteine translase activity|L-cysteine:tRNACys ligase (AMP-forming)|cysteinyl-tRNA synthetase activity Reactome:R-HSA-380158|EC:6.1.1.16|MetaCyc:CYSTEINE--TRNA-LIGASE-RXN|Reactome:R-HSA-379887|RHEA:17773 molecular_function owl:Class GO:0097360 biolink:NamedThing chorionic trophoblast cell proliferation The multiplication or reproduction of chorionic trophoblast cells, resulting in the expansion of their population. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-19T10:17:37Z biological_process owl:Class GO:0019146 biolink:NamedThing arabinose-5-phosphate isomerase activity Catalysis of the reaction: D-arabinose 5-phosphate = D-ribulose 5-phosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl arabinose phosphate isomerase activity|D-arabinose-5-phosphate aldose-ketose-isomerase activity|phosphoarabinoisomerase activity|D-arabinose-5-phosphate ketol-isomerase activity EC:5.3.1.13|RHEA:23104|KEGG_REACTION:R01530|MetaCyc:DARAB5PISOM-RXN molecular_function owl:Class GO:1990181 biolink:NamedThing acetyl-CoA biosynthetic process from pantothenate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pantothenate via phosphopantothenate and CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA synthesis from pantothenate|acetyl-CoA anabolism from pantothenate|acetyl-CoA formation from pantothenate mah 2013-08-30T16:20:44Z biological_process owl:Class GO:0018875 biolink:NamedThing anaerobic benzoate metabolic process The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid) that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic benzoate metabolism UM-BBD_pathwayID:benz|MetaCyc:CENTBENZCOA-PWY biological_process owl:Class GO:0006642 biolink:NamedThing triglyceride mobilization The release of triglycerides, any triester of glycerol, from storage within cells or tissues, making them available for metabolism. tmpzr1t_l9r_go_relaxed.owl triacylglycerol mobilization biological_process owl:Class GO:0090385 biolink:NamedThing phagosome-lysosome fusion The creation of a phagolysosome from a phagosome and a lysosome. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:24:28Z biological_process owl:Class GO:1904838 biolink:NamedThing regulation of male germ-line stem cell asymmetric division Any process that modulates the frequency, rate or extent of male germ-line stem cell asymmetric division. tmpzr1t_l9r_go_relaxed.owl regulation of male germ-line stem cell renewal sl 2015-12-05T00:28:31Z biological_process owl:Class GO:0071098 biolink:NamedThing alpha6-beta4 integrin-Fyn complex A protein complex that consists of an alpha6-beta4 integrin complex bound to the Src family tyrosine kinase Fyn. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB4-FYN complex mah 2009-11-06T04:52:10Z cellular_component owl:Class GO:0005183 biolink:NamedThing gonadotropin hormone-releasing hormone activity The action characteristic of gonadotropin hormone-releasing hormone (GnRH), any of a family of decapeptide amide hormones that are released by the hypothalamus in response to neural and/or chemical stimuli. In at least mammals, upon receptor binding, GnRH causes the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl gonadotrophin hormone-releasing hormone activity|luteinizing hormone-releasing factor activity|luteinizing hormone/follicle-stimulating hormone releasing factor activity|LH/FSH-RF|GnRH activity|LHRH activity|luteinizing hormone-releasing hormone activity molecular_function owl:Class GO:0039519 biolink:NamedThing modulation by virus of host autophagy Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host. tmpzr1t_l9r_go_relaxed.owl regulation by virus of host autophagy bf 2011-06-22T04:19:19Z biological_process owl:Class GO:0048798 biolink:NamedThing swim bladder inflation The expansion of the swim bladder by trapped gases. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ. tmpzr1t_l9r_go_relaxed.owl gas bladder inflation biological_process owl:Class GO:0001940 biolink:NamedThing male pronucleus The pronucleus originating from the spermatozoa that was involved in fertilization. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097583 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt3p dimer complex A protein dimer complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity and, in S. cerevisiae, is composed of Pmt1p-Pmt3p. tmpzr1t_l9r_go_relaxed.owl Pmt1p-Pmt3p complex pr 2014-03-02T18:16:29Z cellular_component owl:Class GO:2000611 biolink:NamedThing positive regulation of thyroid hormone generation Any process that activates or increases the frequency, rate or extent of thyroid hormone generation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-18T10:12:22Z biological_process owl:Class GO:0051110 biolink:NamedThing peptidyl-histidine uridylylation, to form peptidyl-1'-(phospho-5'-uridine)-L-histidine The uridylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0372 biological_process owl:Class GO:0016669 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, cytochrome as acceptor EC:1.8.2.- molecular_function owl:Class GO:2000157 biolink:NamedThing negative regulation of ubiquitin-specific protease activity Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin-specific protease (deubiquitinase) activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of UBP|negative regulation of UCH2|negative regulation of ubiquitin hydrolase activity|negative regulation of deubiquitinase activity tb 2010-10-04T10:42:27Z biological_process owl:Class GO:0002799 biolink:NamedThing positive regulation of antibacterial peptide secretion Any process that activates or increases the frequency, rate, or extent of antibacterial peptide secretion. tmpzr1t_l9r_go_relaxed.owl stimulation of antibacterial peptide secretion|up-regulation of antibacterial peptide secretion|activation of antibacterial peptide secretion|upregulation of antibacterial peptide secretion|up regulation of antibacterial peptide secretion biological_process owl:Class GO:0015911 biolink:NamedThing long-chain fatty acid import across plasma membrane The directed movement of long-chain fatty acids from outside of a cell, across the plasma membrane and into the cytosol. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl plasma membrane long-chain fatty acid transport biological_process owl:Class GO:1902001 biolink:NamedThing fatty acid transmembrane transport The process in which a fatty acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl pr 2013-03-21T09:57:00Z biological_process owl:Class GO:0019596 biolink:NamedThing mandelate catabolic process The chemical reactions and pathways resulting in the breakdown of mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic. tmpzr1t_l9r_go_relaxed.owl mandelate breakdown|mandelate degradation|mandelate catabolism biological_process owl:Class GO:0010643 biolink:NamedThing cell communication by chemical coupling The process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005328 biolink:NamedThing neurotransmitter:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/neurotransmitter symporter activity molecular_function owl:Class GO:0019424 biolink:NamedThing sulfide oxidation, using siroheme sulfite reductase A sulfide oxidation process that proceeds via the reaction catalyzed by siroheme sulfite reductase. tmpzr1t_l9r_go_relaxed.owl sulphur oxidation, using siroheme sulphite reductase|sulphide oxidation, using siroheme sulphite reductase|sulfur oxidation, using siroheme sulfite reductase|sulfide oxidation, using sirohaem sulfite reductase|sulfur oxidation, using sirohaem sulfite reductase MetaCyc:P223-PWY GO:0019425 biological_process owl:Class GO:0042023 biolink:NamedThing DNA endoreduplication Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. tmpzr1t_l9r_go_relaxed.owl DNA endoreplication|DNA re-duplication Note that this term is only to be used in situations were this process occurs normally. Not to be used to describe mutant or diseased states. biological_process owl:Class GO:0046041 biolink:NamedThing ITP metabolic process The chemical reactions and pathways involving ITP, inosine triphosphate. tmpzr1t_l9r_go_relaxed.owl ITP metabolism biological_process owl:Class GO:1901504 biolink:NamedThing triazole transport The directed movement of a triazole into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-17T09:47:46Z biological_process owl:Class GO:0015324 biolink:NamedThing peptide-acetyl-CoA secondary active transmembrane transporter activity Enables the transfer of peptide-acetyl-CoA from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl peptide-acetyl-CoA transporter activity molecular_function owl:Class GO:0071632 biolink:NamedThing optomotor response Eye, head or whole body movements that help to compensate movements of the environment in order to stabilize its image on the retina. In the case of whole body movements, these motor actions may also stabilize a locomotor course in response to some disturbance. Examples include: the optokinetic reflex, which allows human eyes to follow objects in motion while the head remains stationary reflex; the optomotor responses of flying insects and swimming fish. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Optomotor_response mah 2010-02-11T04:06:41Z biological_process owl:Class GO:0004712 biolink:NamedThing protein serine/threonine/tyrosine kinase activity Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; ATP + a protein threonine = ADP + protein threonine phosphate; and ATP + a protein tyrosine = ADP + protein tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl dual-specificity protein kinase|protein threonine/tyrosine kinase activity|dual-specificity kinase activity Reactome:R-HSA-6802941|Reactome:R-HSA-6802916|Reactome:R-HSA-6802910|Reactome:R-HSA-9656212|EC:2.7.12.1|Reactome:R-HSA-6802927|Reactome:R-HSA-5674373|Reactome:R-HSA-6802922|Reactome:R-HSA-5672969|Reactome:R-HSA-6802921|Reactome:R-HSA-6802918|Reactome:R-HSA-6802924 molecular_function owl:Class GO:1904817 biolink:NamedThing serous membrane development The process whose specific outcome is the progression of a serous membrane over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tunica serosa development|wall of serous sac development|serosa development dph 2015-11-17T19:00:01Z biological_process owl:Class GO:0009240 biolink:NamedThing isopentenyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. tmpzr1t_l9r_go_relaxed.owl isopentenyl diphosphate synthesis|isopentenyl diphosphate biosynthesis|isopentenyl diphosphate formation|IPP biosynthetic process|isopentenyl diphosphate anabolism|isopentenyl pyrophosphate biosynthesis|isopentenyl pyrophosphate biosynthetic process|IPP biosynthesis biological_process owl:Class GO:0043548 biolink:NamedThing phosphatidylinositol 3-kinase binding Binding to a phosphatidylinositol 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 3-kinase binding|PI3K binding molecular_function owl:Class GO:0098685 biolink:NamedThing Schaffer collateral - CA1 synapse A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T16:29:43Z cellular_component owl:Class GO:1901953 biolink:NamedThing positive regulation of anterograde dense core granule transport Any process that activates or increases the frequency, rate or extent of anterograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl activation of anterograde dense core granule transport|up regulation of anterograde dense core granule transport|up-regulation of anterograde dense core granule transport|upregulation of anterograde dense core granule transport pr 2013-02-19T13:36:35Z biological_process owl:Class GO:2000002 biolink:NamedThing negative regulation of DNA damage checkpoint Any process that stops, prevents, or reduces the frequency, rate or extent of a DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl negative regulation of DNA damage response, signal transduction resulting in cell cycle arrest jl 2010-07-15T03:25:06Z biological_process owl:Class GO:0120084 biolink:NamedThing endothelial tip cell filopodium assembly The assembly of a filopodium, a thin, stiff protrusion extended by the endothelial tip cell of a vascular sprout. tmpzr1t_l9r_go_relaxed.owl krc 2017-07-07T18:05:10Z biological_process owl:Class GO:1990651 biolink:NamedThing inositol-1,2,4,5,6-pentakisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 1,2,4,5,6-pentakisphosphate + H2O = 1D-myo-inositol 1,2,4,6-tetrakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2015-02-23T11:17:19Z molecular_function owl:Class GO:0051256 biolink:NamedThing mitotic spindle midzone assembly The cell cycle process in which the aggregation, arrangement and bonding together of a set of components forms the spindle midzone. tmpzr1t_l9r_go_relaxed.owl spindle midzone biogenesis involved in mitosis|mitotic spindle midzone biogenesis|mitotic spindle midzone formation|mitotic spindle midzone biosynthesis|spindle midzone formation involved in mitosis|spindle midzone assembly involved in mitosis biological_process owl:Class GO:0007221 biolink:NamedThing positive regulation of transcription of Notch receptor target The activation of transcription of specific genes as a result of Notch signaling, mediated by the Notch intracellular domain. tmpzr1t_l9r_go_relaxed.owl Notch receptor target transcription factor activation|N receptor target transcription factor activation biological_process owl:Class GO:0046964 biolink:NamedThing 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity Enables the transfer of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenosine 5'-phosphosulphate transporter activity|PAPS transporter activity|adenosine 3'-phosphate 5'-phosphosulfate transmembrane transporter activity Reactome:R-HSA-741449 molecular_function owl:Class GO:0019604 biolink:NamedThing toluene oxidation to catechol The formation from toluene of catechol, dihydroxybenzene, by successive oxidations followed by loss of carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl UM-BBD_pathwayID:tol|MetaCyc:TOLUENE-DEG-CATECHOL-PWY biological_process owl:Class GO:0043493 biolink:NamedThing viral terminase complex A complex of a large and small subunit which catalyze the packaging of DNA into viral heads. Note that not all viral terminases have this structure, some exist as single polypeptides. tmpzr1t_l9r_go_relaxed.owl phage terminase complex|virus terminase complex cellular_component owl:Class GO:0036356 biolink:NamedThing cyclic 2,3-diphosphoglycerate synthetase activity Catalysis of the reaction: 2,3-diphosphoglycerate (DPG) + ATP = cyclic 2,3-diphosphoglycerate (cDPG) + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl cDPGS activity|CPGS activity This reaction is the intramolecular cyclization of 2,3-diphosphoglycerate to cyclic 2,3-diphosphoglycerate and is the second step in the biosynthesis of cyclic 2,3-diphosphoglycerate (cDPG). bf 2012-09-19T14:59:19Z molecular_function owl:Class GO:0034209 biolink:NamedThing sterol acetylation The addition of an acetyl group to a sterol molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047331 biolink:NamedThing diphosphate-glycerol phosphotransferase activity Catalysis of the reaction: glycerol + diphosphate = glycerol 1-phosphate + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl PPi-glycerol phosphotransferase activity|diphosphate:glycerol 1-phosphotransferase activity|pyrophosphate--glycerol phosphotransferase activity RHEA:13689|EC:2.7.1.79|KEGG_REACTION:R01044|MetaCyc:2.7.1.79-RXN molecular_function owl:Class GO:2000270 biolink:NamedThing negative regulation of fibroblast apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast apoptotic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of fibroblast apoptosis jl 2010-11-23T01:07:27Z biological_process owl:Class GO:0061849 biolink:NamedThing telomeric G-quadruplex DNA binding Binding to telomeric G-quadruplex DNA structures, in which groups of four guanines adopt a flat, cyclic Hoogsteen hydrogen-bonding arrangement known as a guanine tetrad. The stacking of guanine tetrads results in G-quadruplex DNA structures in telomeres. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0039548 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity Any process in which a virus stops, prevents, or reduces a viral-induced cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of host IRF3 (interferon regulatory factor-3). IRF3 is a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF3, which allows IRF3 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host interferon regulatory factor 3|suppression by virus of host IRF3 activity|inhibition of host IRF3 by virus|inhibition of IRF3-dependent antiviral response https://github.com/geneontology/go-ontology/issues/21985 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-01-19T04:04:26Z biological_process owl:Class GO:0052084 biolink:NamedThing modulation by symbiont of host ethylene-mediated defense response Any process in which a symbiont modulates the frequency, rate or extent of the ethylene-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of defense-related host ethylene-mediated signal transduction pathway|modulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism involved in symbiotic interaction|modulation by organism of ethylene-mediated defense response of other organism involved in symbiotic interaction GO:0052077|GO:0052279|GO:0052441 biological_process owl:Class GO:0021574 biolink:NamedThing rhombomere 8 development The process whose specific outcome is the progression of rhombomere 8 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090001 biolink:NamedThing replication fork arrest at tRNA locus A process that impedes the progress of the DNA replication fork at natural replication fork pausing sites within the eukaryotic tRNA transcription unit. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-24T11:36:15Z biological_process owl:Class GO:0043111 biolink:NamedThing replication fork arrest Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication by impeding the progress of the DNA replication fork. Replication fork arrest is one of the 'quality control' processes ensuring that DNA-dependent DNA replication occurs correctly. DNA replication fork arrest during DNA-dependent DNA replication is not known to occur outside of cases where a replication error needs to be prevented or corrected. tmpzr1t_l9r_go_relaxed.owl replication fork stalling|negative regulation of DNA replication at replication fork barrier|replication fork blocking See also the biological process term 'site-specific replication termination ; GO:0071170' and its children. biological_process owl:Class GO:0050809 biolink:NamedThing diazepam binding Binding to diazepam, one of the most widely used benzodiazepine drugs. It is used as an anti-anxiety-hypnotic agent and has the proprietary name Valium. tmpzr1t_l9r_go_relaxed.owl diazepam binding inhibitor activity|Valium binding molecular_function owl:Class GO:0010423 biolink:NamedThing negative regulation of brassinosteroid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of brassinosteroids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043155 biolink:NamedThing negative regulation of photosynthesis, light reaction Any process that stops, prevents, or reduces the frequency, rate or extent of the light-dependent reaction of photosynthesis. tmpzr1t_l9r_go_relaxed.owl downregulation of photosynthesis, light reaction|inhibition of photosynthesis, light reaction|down-regulation of photosynthesis, light reaction|down regulation of photosynthesis, light reaction biological_process owl:Class GO:0061248 biolink:NamedThing mesonephric glomerulus vasculature morphogenesis The process in which the anatomical structures of the mesonephric glomerulus vasculature are generated and organized. The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:11:34Z biological_process owl:Class GO:0033576 biolink:NamedThing protein glycosylation in cytosol The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in the cytosol. tmpzr1t_l9r_go_relaxed.owl protein amino acid glycosylation in cytosol biological_process owl:Class GO:0009825 biolink:NamedThing multidimensional cell growth The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. tmpzr1t_l9r_go_relaxed.owl cell growth in two dimensions|cell growth in three dimensions biological_process owl:Class GO:0004366 biolink:NamedThing glycerol-3-phosphate O-acyltransferase activity Catalysis of the reaction: acyl-CoA + sn-glycerol 3-phosphate = CoA + 1-acyl-sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:sn-glycerol-3-phosphate 1-O-acyltransferase activity|sn-glycerol-3-phosphate acyltransferase activity|glycerol 3-phosphate acyltransferase activity|3-glycerophosphate acyltransferase activity|alpha-glycerophosphate acyltransferase activity|glycerol phosphate transacylase activity|ACP:sn-glycerol-3-phosphate acyltransferase activity|glycerophosphate acyltransferase activity|sn-glycerol 3-phosphate acyltransferase activity|glycerophosphate transacylase activity|glycerol phosphate acyltransferase activity Reactome:R-HSA-549112|Reactome:R-HSA-1482695|EC:2.3.1.15|Reactome:R-HSA-75886|MetaCyc:RXN-1381|RHEA:15325 molecular_function owl:Class GO:0052598 biolink:NamedThing histamine oxidase activity Catalysis of the reaction: histamine + H2O + O2 = imidazole-4-acetaldehyde + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl histamine:oxygen oxidoreductase (deaminating) activity|1H-Imidazole-4-ethanamine:oxygen oxidoreductase (deaminating) activity|1H-Imidazole-4-ethanamine oxidase activity RHEA:25625|KEGG_REACTION:R02150|EC:1.4.3.22|MetaCyc:RXN-9600|Reactome:R-HSA-5696131 molecular_function owl:Class GO:0050587 biolink:NamedThing chlorite O2-lyase activity Catalysis of the reaction: chloride + O(2) = chlorite. tmpzr1t_l9r_go_relaxed.owl chloride:oxygen oxidoreductase activity|chlorite dismutase activity RHEA:21404|UM-BBD_reactionID:r0982|KEGG_REACTION:R05721|MetaCyc:1.13.11.49-RXN|EC:1.13.11.49 GO:0030065 molecular_function owl:Class GO:0045140 biolink:NamedThing inositol phosphoceramide synthase activity Catalysis of the reaction: phytoceramide + inositol phosphate = inositol phosphoceramide + diacylglycerol. tmpzr1t_l9r_go_relaxed.owl IPC synthase activity MetaCyc:RXN3O-581|EC:2.7.1.227 molecular_function owl:Class GO:0018241 biolink:NamedThing protein O-linked glycosylation via hydroxylysine The glycosylation of protein via the O5 atom of peptidyl-hydroxylysine, forming O5-glycosyl-L-hydroxylysine; the most common form is galactosyl hydroxylysine. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-linked glycosylation via hydroxylysine RESID:AA0153 biological_process owl:Class GO:0016330 biolink:NamedThing second mitotic wave involved in compound eye morphogenesis A discrete cell cycle in the third instar eye imaginal disc after progression of the morphogenetic furrow that contributes to compound eye morphogenesis. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia. tmpzr1t_l9r_go_relaxed.owl second mitotic wave during compound eye morphogenesis biological_process owl:Class GO:0030669 biolink:NamedThing clathrin-coated endocytic vesicle membrane The lipid bilayer surrounding a clathrin-coated endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905414 biolink:NamedThing negative regulation of dense core granule exocytosis Any process that stops, prevents or reduces the frequency, rate or extent of dense core granule exocytosis. tmpzr1t_l9r_go_relaxed.owl downregulation of dense core vesicle exocytosis|down regulation of dense core granule exocytosis|downregulation of dense core granule exocytosis|down-regulation of dense core granule exocytosis|down-regulation of dense core vesicle exocytosis|inhibition of dense core vesicle exocytosis|negative regulation of dense core vesicle exocytosis|down regulation of dense core vesicle exocytosis|inhibition of dense core granule exocytosis bf 2016-08-31T08:02:28Z biological_process owl:Class GO:0030187 biolink:NamedThing melatonin biosynthetic process The chemical reactions and pathways resulting in the formation of melatonin (N-acetyl-5-methoxytryptamine). tmpzr1t_l9r_go_relaxed.owl melatonin formation|melatonin synthesis|melatonin biosynthesis|melatonin anabolism biological_process owl:Class GO:1904390 biolink:NamedThing cone retinal bipolar cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a cone retinal bipolar cell. tmpzr1t_l9r_go_relaxed.owl cone bipolar cell differentiation|retinal cone bipolar cell differentiation sl 2015-06-23T19:01:16Z biological_process owl:Class GO:0018465 biolink:NamedThing vanillyl-alcohol oxidase activity Catalysis of the reaction: O(2) + vanillyl alcohol = H(2)O(2) + vanillin. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-2-methoxybenzyl alcohol oxidase activity|vanillyl alcohol:oxygen oxidoreductase activity UM-BBD_reactionID:r0651|KEGG_REACTION:R02877|EC:1.1.3.38|RHEA:10036|MetaCyc:1.1.3.38-RXN molecular_function owl:Class GO:0042245 biolink:NamedThing RNA repair Any process that results in the repair of damaged RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900814 biolink:NamedThing monodictyphenone catabolic process The chemical reactions and pathways resulting in the breakdown of monodictyphenone. tmpzr1t_l9r_go_relaxed.owl monodictyphenone catabolism|monodictyphenone degradation|monodictyphenone breakdown di 2012-06-04T10:11:27Z biological_process owl:Class GO:0045251 biolink:NamedThing electron transfer flavoprotein complex A protein complex facilitating the electron transfer from an acyl-CoA molecule to ubiquinone via its flavin adenine dinucleotide (FAD) cofactor. Usually contains an alpha and a beta subunit and the structural cofactor adenosine monophosphate (AMP). Part of a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors in the electron transport system. tmpzr1t_l9r_go_relaxed.owl ETF complex cellular_component owl:Class GO:0044856 biolink:NamedThing plasma membrane raft localization Any process in which plasma membrane rafts are transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl jl 2014-07-23T16:12:22Z biological_process owl:Class GO:1902729 biolink:NamedThing negative regulation of proteoglycan biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. tmpzr1t_l9r_go_relaxed.owl down regulation of proteoglycan biosynthetic process|negative regulation of proteoglycan synthesis|down regulation of proteoglycan biosynthesis|inhibition of proteoglycan biosynthetic process|down-regulation of proteoglycan biosynthesis|downregulation of proteoglycan anabolism|down-regulation of proteoglycan anabolism|down regulation of proteoglycan formation|down regulation of proteoglycan synthesis|down-regulation of proteoglycan formation|downregulation of proteoglycan biosynthesis|downregulation of proteoglycan formation|downregulation of proteoglycan synthesis|negative regulation of proteoglycan anabolism|down-regulation of proteoglycan synthesis|down-regulation of proteoglycan biosynthetic process|inhibition of proteoglycan biosynthesis|negative regulation of proteoglycan biosynthesis|inhibition of proteoglycan synthesis|downregulation of proteoglycan biosynthetic process|inhibition of proteoglycan anabolism|inhibition of proteoglycan formation|down regulation of proteoglycan anabolism|negative regulation of proteoglycan formation mr 2014-02-24T16:10:43Z biological_process owl:Class GO:0047825 biolink:NamedThing D-lactate-2-sulfatase activity Catalysis of the reaction: (R)-2-O-sulfolactate + H(2)O = (R)-lactate + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl (S)-2-O-sulfolactate 2-sulfohydrolase activity|D-lactate-2-sulphatase activity RHEA:20337|KEGG_REACTION:R01448|EC:3.1.6.17|MetaCyc:D-LACTATE-2-SULFATASE-RXN molecular_function owl:Class GO:0102876 biolink:NamedThing psoralen synthase activity Catalysis of the reaction: (+)-marmesin + NADPH + H+ + O2 <=> psoralen + NADP + acetone + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8386|RHEA:19281|EC:1.14.14.141 molecular_function owl:Class GO:1903770 biolink:NamedThing negative regulation of beta-galactosidase activity Any process that stops, prevents or reduces the frequency, rate or extent of beta-galactosidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of beta-D-lactosidase activity|downregulation of lactozym|inhibition of beta-D-lactosidase activity|downregulation of sumiklat|inhibition of beta-D-galactoside galactohydrolase activity|inhibition of maxilact|negative regulation of beta-D-galactoside galactohydrolase activity|downregulation of beta-D-lactosidase activity|negative regulation of beta-lactosidase activity|down-regulation of hydrolact|inhibition of beta-galactosidase activity|inhibition of lactozym|downregulation of trilactase activity|downregulation of exo-(1->4)-beta-D-galactanase activity|inhibition of oryzatym|inhibition of lactose hydrolysis|down-regulation of sumiklat|down regulation of maxilact|negative regulation of maxilact|inhibition of trilactase activity|negative regulation of beta-D-galactanase activity|inhibition of exo-(1->4)-beta-D-galactanase activity|down regulation of beta-D-lactosidase activity|downregulation of beta-galactosidase activity|down-regulation of beta-D-lactosidase activity|downregulation of S 2107|downregulation of beta-D-galactanase activity|down-regulation of beta-galactosidase activity|negative regulation of S 2107|down regulation of beta-galactosidase activity|negative regulation of trilactase activity|downregulation of oryzatym|negative regulation of sumiklat|down-regulation of lactozym|down-regulation of exo-(1->4)-beta-D-galactanase activity|downregulation of maxilact|down-regulation of lactose hydrolysis|down-regulation of oryzatym|negative regulation of lactozym|inhibition of beta-D-galactanase activity|inhibition of sumiklat|down regulation of beta-D-galactoside galactohydrolase activity|down-regulation of maxilact|down regulation of hydrolact|downregulation of beta-lactosidase activity|downregulation of hydrolact|down-regulation of beta-D-galactoside galactohydrolase activity|down regulation of beta-D-galactanase activity|down regulation of exo-(1->4)-beta-D-galactanase activity|down-regulation of trilactase activity|down regulation of lactozym|downregulation of beta-D-galactoside galactohydrolase activity|down-regulation of beta-lactosidase activity|down regulation of oryzatym|down regulation of S 2107|down regulation of lactose hydrolysis|down-regulation of beta-D-galactanase activity|negative regulation of hydrolact|inhibition of S 2107|inhibition of beta-lactosidase activity|inhibition of hydrolact|negative regulation of exo-(1->4)-beta-D-galactanase activity|negative regulation of oryzatym|down-regulation of S 2107|downregulation of lactose hydrolysis|down regulation of beta-lactosidase activity|negative regulation of lactose hydrolysis|down regulation of sumiklat|down regulation of trilactase activity nc 2015-01-06T10:53:22Z biological_process owl:Class GO:1902516 biolink:NamedThing sn-glycerol 3-phosphate binding Binding to sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl An example of this is UgpB in E. coli [P0AG80] - see PMID:23013274. bhm 2013-11-27T16:50:55Z molecular_function owl:Class GO:1903218 biolink:NamedThing regulation of malate dehydrogenase (decarboxylating) (NADP+) activity Any process that modulates the frequency, rate or extent of malate dehydrogenase (decarboxylating) (NADP+) activity. tmpzr1t_l9r_go_relaxed.owl regulation of malate dehydrogenase (decarboxylating, NADP)|regulation of NADP-malic enzyme activity|regulation of L-malate:NADP oxidoreductase activity|regulation of NADP-specific malate dehydrogenase activity|regulation of malate dehydrogenase (NADP, decarboxylating)|regulation of 'malic' enzyme|regulation of NADP-linked decarboxylating malic enzyme|regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|regulation of NADP-specific malic enzyme sart 2014-07-24T11:17:22Z biological_process owl:Class GO:0008885 biolink:NamedThing glutathionylspermidine synthase activity Catalysis of the reaction: gamma-L-glutamyl-L-cysteinyl-glycine + spermidine + ATP = N1-(gamma-L-glutamyl-L-cysteinyl-glycyl)-spermidine + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) [spermidine is numbered so that atom N-1 is in the amino group of the aminopropyl part of the molecule]|glutathionylspermidine synthetase activity|GSP synthetase activity|gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) activity|glutathione:spermidine ligase (ADP-forming) activity MetaCyc:GSPSYN-RXN|RHEA:21272|EC:6.3.1.8 molecular_function owl:Class GO:1901429 biolink:NamedThing negative regulation of syringal lignin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of syringal lignin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of syringal lignin anabolism|negative regulation of syringal lignin synthesis|inhibition of syringal lignin synthesis|down-regulation of S-lignin biosynthetic process|negative regulation of syringal lignin formation|inhibition of syringal lignin anabolism|inhibition of S-lignin biosynthetic process|down regulation of syringal lignin biosynthesis|negative regulation of syringal lignin biosynthesis|downregulation of syringal lignin synthesis|down regulation of syringal lignin formation|inhibition of syringal lignin biosynthetic process|down regulation of syringal lignin anabolism|downregulation of syringal lignin biosynthesis|down-regulation of syringal lignin synthesis|downregulation of syringal lignin biosynthetic process|downregulation of syringal lignin formation|negative regulation of syringal lignin anabolism|down regulation of syringal lignin synthesis|negative regulation of S-lignin biosynthetic process|inhibition of syringal lignin biosynthesis|down-regulation of syringal lignin biosynthesis|downregulation of S-lignin biosynthetic process|down-regulation of syringal lignin anabolism|down-regulation of syringal lignin formation|down regulation of syringal lignin biosynthetic process|inhibition of syringal lignin formation|down-regulation of syringal lignin biosynthetic process|down regulation of S-lignin biosynthetic process tb 2012-10-01T20:14:51Z biological_process owl:Class GO:0032327 biolink:NamedThing W-molybdopterin cofactor catabolic process The chemical reactions and pathways resulting in the breakdown of the W-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear tungsten ion (W) coordinated by one or two molybdopterin ligands. tmpzr1t_l9r_go_relaxed.owl Moco catabolism|W-molybdopterin cofactor breakdown|Moco catabolic process|W-molybdopterin cofactor degradation|W-molybdopterin cofactor catabolism biological_process owl:Class GO:0051413 biolink:NamedThing response to cortisone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisone stimulus. Cortisone is a natural glucocorticoid steroid hormone that is metabolically convertible to cortisol. Cortisone is synthesized from cholesterol in the cortex of the adrenal gland under the stimulation of adrenocorticotropin hormone (ACTH). The main physiological effect of cortisone is on carbohydrate metabolism; it can stimulate increased glucose release from the liver, increased liver glycogen synthesis, and decreased utilization of glucose by the tissues. tmpzr1t_l9r_go_relaxed.owl response to cortisone stimulus biological_process owl:Class GO:0031872 biolink:NamedThing type 1 proteinase activated receptor binding Binding to a type 1 proteinase activated receptor. tmpzr1t_l9r_go_relaxed.owl type 1 proteinase activated receptor ligand|thrombin receptor binding molecular_function owl:Class GO:0047742 biolink:NamedThing chenodeoxycholoyltaurine hydrolase activity Catalysis of the reaction: chenodeoxycholoyltaurine + H2O = chenodeoxycholate + taurine. tmpzr1t_l9r_go_relaxed.owl chenodeoxycholoyltaurine amidohydrolase activity RHEA:16309|MetaCyc:CHENODEOXYCHOLOYLTAURINE-HYDROLASE-RXN|EC:3.5.1.74 molecular_function owl:Class GO:1990627 biolink:NamedThing mitochondrial inner membrane fusion The membrane organization process that joins two mitochondrial inner membranes to form a single membrane. tmpzr1t_l9r_go_relaxed.owl mitochondrion inner membrane fusion vw 2015-02-02T11:37:56Z biological_process owl:Class GO:0102277 biolink:NamedThing 2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase activity Catalysis of the reaction: 2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose + H2O = N-acetyl-D-glucosamine + D-glucosamine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12544 molecular_function owl:Class GO:0003243 biolink:NamedThing circumferential growth involved in left ventricle morphogenesis The morphogenetic growth in which the left ventricle grows expanding its external boundary. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:33:09Z biological_process owl:Class GO:0033677 biolink:NamedThing DNA/RNA helicase activity Unwinding of a DNA/RNA duplex, i.e. a double helix in which a strand of DNA pairs with a complementary strand of RNA, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent DNA/RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 GO:0033680 molecular_function owl:Class GO:0046172 biolink:NamedThing octanol catabolic process The chemical reactions and pathways resulting in the breakdown of octanol, the 8-carbon alcohol with the formula C8H17OH. tmpzr1t_l9r_go_relaxed.owl octanol catabolism|octanol degradation|octanol breakdown biological_process owl:Class GO:0043189 biolink:NamedThing H4/H2A histone acetyltransferase complex A multisubunit complex that catalyzes the acetylation of histones H4 and H2A. tmpzr1t_l9r_go_relaxed.owl H4/H2A HAT complex cellular_component owl:Class GO:0060930 biolink:NamedThing sinoatrial node cell fate commitment The commitment of cells to sinoatrial (SA) node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sinoatrial node. tmpzr1t_l9r_go_relaxed.owl SAN cell commitment|sinus node cell commitment|SA node cell commitment dph 2009-09-29T12:03:38Z biological_process owl:Class GO:0047956 biolink:NamedThing glycerol dehydrogenase [NADP+] activity Catalysis of the reaction: glycerol + NADP+ = D-glyceraldehyde + NADPH. tmpzr1t_l9r_go_relaxed.owl glycerol dehydrogenase (NADP+) activity|glycerol:NADP+ oxidoreductase activity MetaCyc:GLYCEROL-DEHYDROGENASE-NADP+-RXN|RHEA:23592|EC:1.1.1.72 molecular_function owl:Class GO:0051392 biolink:NamedThing tRNA N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + cytidine = CoA + N4-acetylcytidine. The cytidine is within the polynucleotide chain of a tRNA. tmpzr1t_l9r_go_relaxed.owl tRNA cytidine N-acetyltransferase activity molecular_function owl:Class GO:0061340 biolink:NamedThing establishment or maintenance of monopolar cell polarity regulating cell shape Any cellular process that results in the specification, formation or maintenance of a monopolar intracellular organization or cell growth patterns that regulate the shape of a cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-29T09:13:55Z biological_process owl:Class GO:0019981 biolink:NamedThing interleukin-6 binding Binding to interleukin-6. tmpzr1t_l9r_go_relaxed.owl IL-6 binding molecular_function owl:Class GO:0102920 biolink:NamedThing acyl coenzyme A: isopenicillin N acyltransferase activity Catalysis of the reaction: octanoyl-CoA + isopenicillin N + H2O <=> H+ + coenzyme A + penicillin K + L-2-aminoadipate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8809|EC:2.3.1.164 molecular_function owl:Class GO:0120017 biolink:NamedThing ceramide transfer activity Removes a ceramide from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl ceramide carrier activity|ceramide transporter activity|intermembrane ceramide transfer activity https://github.com/geneontology/go-ontology/issues/12329 krc 2010-12-08T12:32:50Z GO:0035620 molecular_function owl:Class GO:0052909 biolink:NamedThing 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity Catalysis of the reaction: 4 S-adenosyl-L-methionine + adenine(1779)/adenine(1780) in 18S rRNA = 4 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(1779)/N(6)-dimethyladenine(1780) in 18S rRNA. tmpzr1t_l9r_go_relaxed.owl M(6)(2)A dimethylase activity https://github.com/geneontology/go-ontology/issues/14459 RHEA:42780|MetaCyc:RXN-11634|EC:2.1.1.183 molecular_function owl:Class GO:0102518 biolink:NamedThing (11Z)-eicosenoate 14-hydroxylase activity Catalysis of the reaction: (11Z)-eicosenoyl-CoA + NADH + O2 + H+ = lesqueroloyl-CoA + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.18.4|MetaCyc:RXN-14488 molecular_function owl:Class GO:0102682 biolink:NamedThing N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity Catalysis of the reaction: N(6)-(dimethylallyl)adenosine 5'-phosphate + H2O <=> N(6)-dimethylallyladenine + D-ribofuranose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4313|RHEA:48560 molecular_function owl:Class GO:0030246 biolink:NamedThing carbohydrate binding Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. tmpzr1t_l9r_go_relaxed.owl sugar binding|selectin GO:0005529 molecular_function owl:Class GO:0047106 biolink:NamedThing 4-hydroxyphenylacetaldehyde dehydrogenase activity Catalysis of the reaction: NAD+ + (4-hydroxyphenyl)acetaldehyde + H2O = NADH + 4-hydroxyphenylacetate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetaldehyde:NAD+ oxidoreductase activity|4-HPAL dehydrogenase activity RHEA:17273|MetaCyc:1.2.1.53-RXN|EC:1.2.1.53 molecular_function owl:Class GO:0047182 biolink:NamedThing alcohol O-cinnamoyltransferase activity Catalysis of the reaction: an alcohol + 1-O-trans-cinnamoyl-beta-D-glucopyranose = beta-D-glucose + alkyl cinnamate. tmpzr1t_l9r_go_relaxed.owl 1-O-trans-cinnamoyl-beta-D-glucopyranose:alcohol O-cinnamoyltransferase activity MetaCyc:2.3.1.152-RXN|EC:2.3.1.152|RHEA:23524 molecular_function owl:Class GO:0032871 biolink:NamedThing regulation of karyogamy Any process that modulates the frequency, rate or extent of karyogamy, the creation of a single nucleus from multiple nuclei as a result of membrane fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000747 biolink:NamedThing negative regulation of defecation rhythm Any process that stops, prevents or reduces the frequency, rate or extent of defecation rhythm. tmpzr1t_l9r_go_relaxed.owl negative regulation of DMP|negative regulation of defecation motor program|negative regulation of defecation cycle|negative regulation of defecation behavior bf 2011-06-15T03:23:10Z biological_process owl:Class GO:0034057 biolink:NamedThing RNA strand-exchange activity Facilitates the displacement of one strand of an RNA-RNA duplex and its replacement with a different strand of higher complementarity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060530 biolink:NamedThing smooth muscle cell differentiation involved in prostate glandular acinus development The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell of the prostate glandular acinus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001200 biolink:NamedThing positive regulation of dendritic cell differentiation Any process that activates or increases the frequency, rate or extent of dendritic cell differentiation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-11-04T02:01:36Z biological_process owl:Class GO:0042385 biolink:NamedThing myosin III complex A myosin complex containing a class III myosin heavy chain and associated light chains; myosin III is monomeric myosin that serves as a link between the cytoskeleton and the signaling complex involved in phototransduction, and differs from all other myosins in having an N-terminal kinase domain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045151 biolink:NamedThing acetoin biosynthetic process The chemical reactions and pathways resulting in the formation of acetoin, 3-hydroxy-2-butanone. tmpzr1t_l9r_go_relaxed.owl acetoin formation|acetoin synthesis|acetoin biosynthesis|acetoin anabolism biological_process owl:Class GO:2000277 biolink:NamedThing positive regulation of oxidative phosphorylation uncoupler activity Any process that activates or increases the frequency, rate or extent of oxidative phosphorylation uncoupler activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of uncoupling protein activity|positive regulation of mitochondrial uncoupling protein activity mah 2010-12-07T12:15:02Z biological_process owl:Class GO:1903515 biolink:NamedThing calcium ion transport from cytosol to endoplasmic reticulum The directed movement of calcium ion from cytosol to endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl rl 2014-10-02T14:51:20Z biological_process owl:Class GO:0018414 biolink:NamedThing nickel incorporation into metallo-sulfur cluster The incorporation of nickel into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl nickel incorporation into metallo-sulphur cluster biological_process owl:Class GO:0034517 biolink:NamedThing ribophagy The selective autophagy process in which cells degrade mature ribosomes under conditions of starvation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045315 biolink:NamedThing positive regulation of compound eye photoreceptor development Any process that activates or increases the frequency, rate or extent of compound eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl up-regulation of eye photoreceptor development|activation of eye photoreceptor development|stimulation of eye photoreceptor development|up regulation of eye photoreceptor development|upregulation of eye photoreceptor development|positive regulation of eye photoreceptor development biological_process owl:Class GO:0050207 biolink:NamedThing plasmanylethanolamine desaturase activity Catalysis of the reaction: O-1-alkyl-2-acyl-sn-glycero-3-phosphoethanolamine + donor-H2 + O2 = O-1-alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine + acceptor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl alkylacylglycerophosphoethanolamine desaturase activity|alkylacylglycero-phosphorylethanolamine dehydrogenase activity|O-1-alkyl-2-acyl-sn-glycero-3-phosphoethanolamine,hydrogen-donor:oxygen oxidoreductase activity|1-O-alkyl-2-acyl-sn-glycero-3-phosphorylethanolamine desaturase activity|1-O-alkyl 2-acyl-sn-glycero-3-phosphorylethanolamine desaturase activity|dehydrogenase, alkyl-acylglycerophosphorylethanolamine|plasmenylethanolamine desaturase activity RHEA:22956|MetaCyc:PLASMANYLETHANOLAMINE-DESATURASE-RXN|EC:1.14.19.77 molecular_function owl:Class GO:0071195 biolink:NamedThing Kv4.2-KChIP4 channel complex A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP4 associated with the channel via interaction with the Kv alpha subunit 4.2. tmpzr1t_l9r_go_relaxed.owl CORUM:3090 mah 2009-11-23T04:59:06Z cellular_component owl:Class GO:1903392 biolink:NamedThing negative regulation of adherens junction organization Any process that stops, prevents or reduces the frequency, rate or extent of adherens junction organization. tmpzr1t_l9r_go_relaxed.owl inhibition of adherens junction organisation|down regulation of adherens junction organisation|negative regulation of adherens junction assembly and maintenance|inhibition of adherens junction organization|down-regulation of adherens junction assembly and maintenance|downregulation of adherens junction assembly and maintenance|down regulation of adherens junction assembly and maintenance|downregulation of adherens junction organization|downregulation of adherens junction organisation|down regulation of adherens junction organization|negative regulation of adherens junction organisation|down-regulation of adherens junction organisation|inhibition of adherens junction assembly and maintenance|down-regulation of adherens junction organization als 2014-08-27T10:08:47Z biological_process owl:Class GO:0045438 biolink:NamedThing delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase activity Catalysis of the formation of delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine from constituent amino acids and ATP in the presence of magnesium ions and dithioerythritol. tmpzr1t_l9r_go_relaxed.owl ACV synthetase activity molecular_function owl:Class GO:0047387 biolink:NamedThing serine-ethanolaminephosphate phosphodiesterase activity Catalysis of the reaction: H(2)O + serine phosphoethanolamine = H(+) + phosphoethanolamine + serine. tmpzr1t_l9r_go_relaxed.owl serine ethanolamine phosphodiester phosphodiesterase activity|SEP diesterase activity|serine-phosphoethanolamine ethanolaminephosphohydrolase activity MetaCyc:3.1.4.13-RXN|KEGG_REACTION:R02817|EC:3.1.4.13|RHEA:17113 molecular_function owl:Class GO:0103062 biolink:NamedThing cis-keto-C60-meroacyl-AMP ligase activity Catalysis of the reaction: ATP(4-) + H2O + a cis-keto-C60-meroacyl-[acp] <=> diphosphoric acid + a cis-keto-meroacyl-adenylate + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1G-4142 molecular_function owl:Class GO:0018069 biolink:NamedThing peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone The cross-linking of a tryptophan residue to tryptophyl quinone to form 4'-(L-tryptophan)-L-tryptophyl quinone, a cofactor found at the active site of methylamine dehydrogenase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0149 biological_process owl:Class GO:0060877 biolink:NamedThing regionalization involved in semicircular canal formation The pattern specification process that results in the subdivision of the otic epithelium in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T09:56:45Z biological_process owl:Class GO:0099400 biolink:NamedThing caveola neck A membrane microdomain that forms a necklace around the bulb (crater) of a caveola. Intramembrane particles are concentrated in this region and cytoskeletal components, including actin, are highly enriched in the area underlying it. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098857 biolink:NamedThing membrane microdomain A membrane region with a lipid composition that is distinct from that of the membrane regions that surround it. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061406 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of glucose. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T11:16:10Z biological_process owl:Class GO:0007253 biolink:NamedThing cytoplasmic sequestering of NF-kappaB The selective interaction of the transcription factor NF-kappaB with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus. tmpzr1t_l9r_go_relaxed.owl cytoplasmic storage of NF-kappaB|cytoplasmic sequestration of NF-kappaB|cytoplasmic NF-kappaB retention|cytoplasmic NF-kappaB sequestration|cytoplasmic NF-kappaB storage|cytoplasmic retention of NF-kappaB|maintenance of NF-kappaB location in cytoplasm biological_process owl:Class GO:0032088 biolink:NamedThing negative regulation of NF-kappaB transcription factor activity Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB. tmpzr1t_l9r_go_relaxed.owl NF-kappaB inhibitor|inhibition of NF-kappaB transcription factor biological_process owl:Class GO:0035095 biolink:NamedThing behavioral response to nicotine Any process that results in a change in the behavior of an organism as a result of a nicotine stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural response to nicotine biological_process owl:Class GO:0008972 biolink:NamedThing phosphomethylpyrimidine kinase activity Catalysis of the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine. tmpzr1t_l9r_go_relaxed.owl ATP:4-amino-2-methyl-5-phosphomethylpyrimidine phosphotransferase activity|hydroxymethylpyrimidine phosphokinase activity RHEA:19893|MetaCyc:PYRIMSYN3-RXN|EC:2.7.4.7 molecular_function owl:Class GO:0015935 biolink:NamedThing small ribosomal subunit The smaller of the two subunits of a ribosome. tmpzr1t_l9r_go_relaxed.owl ribosomal small subunit cellular_component owl:Class GO:0005001 biolink:NamedThing transmembrane receptor protein tyrosine phosphatase activity Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010198 biolink:NamedThing synergid death Synergid cells undergo degeneration and death in response to penetration by the pollen tube. It is an active process that involves a dramatic decrease in cell volume, collapse of the vacuoles, and complete disintegration of the plasma membrane and most organelles. tmpzr1t_l9r_go_relaxed.owl synergid cell death|synergid degeneration GO:0048470 biological_process owl:Class GO:0035102 biolink:NamedThing PRC1 complex A multiprotein complex that mediates monoubiquitination of lysine residues of histone H2A (lysine-118 in Drosophila or lysine-119 in mammals). The complex is required for stable long-term maintenance of transcriptionally repressed states and is involved in chromatin remodeling. tmpzr1t_l9r_go_relaxed.owl Polycomb repressive complex 1 In Drosophila the core subunits are Pc (Polycomb), Psc (Posterior sex combs), Ph (Polyhomeotic) and Sce (Sex comb extra). In mammals, which have several orthologs for each of the Drosophila core proteins, a family of distinct PRC1-like complexes seem to exist which contain at least some PcG proteins in mutually exclusive manner. cellular_component owl:Class GO:0030127 biolink:NamedThing COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010747 biolink:NamedThing positive regulation of long-chain fatty acid import across plasma membrane Any process that increases the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl positive regulation of plasma membrane long-chain fatty acid transport biological_process owl:Class GO:0047546 biolink:NamedThing 2-hydroxypyridine 5-monooxygenase activity Catalysis of the reaction: 2-hydroxypyridine + AH(2) + O(2) = 2,5-dihydroxypyridine + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl 2-hydroxypyridine oxygenase activity|2-hydroxypyridine,hydrogen-donor:oxygen oxidoreductase (5-hydroxylating) KEGG_REACTION:R03206|MetaCyc:2-HYDROXYPYRIDINE-5-MONOOXYGENASE-RXN|EC:1.14.99.26|RHEA:16973 molecular_function owl:Class GO:1904186 biolink:NamedThing post-anaphase microtubule array organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly ofa post-anaphase microtubule array. tmpzr1t_l9r_go_relaxed.owl post-anaphase array organization|post-anaphase microtubule array organisation|PAA organization mah 2015-05-05T14:40:16Z biological_process owl:Class GO:0035018 biolink:NamedThing adult chitin-based cuticle pattern formation The process that gives rise to the patterns of cell differentiation that will arise in the chitin-based adult cuticle. An example of this process is adult chitin-based cuticle pattern formation in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl adult cuticle pattern formation biological_process owl:Class GO:0044534 biolink:NamedThing envenomation resulting in modulation of apoptotic process in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of apoptosis in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-21T11:39:44Z biological_process owl:Class GO:0102655 biolink:NamedThing 1-18:1-2-trans-16:1-phosphatidylglycerol desaturase activity Catalysis of the reaction: 1-18:1-2-trans-16:1-phosphatidylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.23|MetaCyc:RXN-1726 molecular_function owl:Class GO:0140132 biolink:NamedThing iron-sulfur cluster carrier activity Binding to an iron-sulfur cluster and delivering it to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14539 pg 2017-11-10T08:55:38Z molecular_function owl:Class GO:0008240 biolink:NamedThing tripeptidyl-peptidase activity Catalysis of the release of an N-terminal tripeptide from a polypeptide. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19681 MetaCyc:3.4.14.10-RXN|MetaCyc:3.4.14.9-RXN|EC:3.4.14.9|EC:3.4.14.10 molecular_function owl:Class GO:0046655 biolink:NamedThing folic acid metabolic process The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. tmpzr1t_l9r_go_relaxed.owl vitamin M metabolic process|vitamin M metabolism|folate metabolism|vitamin B9 metabolism|folate metabolic process|vitamin B9 metabolic process|folic acid metabolism biological_process owl:Class GO:1904277 biolink:NamedThing negative regulation of wax biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of wax biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of wax synthesis|downregulation of wax formation|down-regulation of wax synthesis|down regulation of wax biosynthesis|down regulation of wax biosynthetic process|down regulation of wax anabolism|downregulation of wax synthesis|down regulation of wax formation|inhibition of wax biosynthetic process|down-regulation of wax formation|down-regulation of wax biosynthesis|negative regulation of wax biosynthesis|downregulation of wax biosynthesis|inhibition of wax biosynthesis|down-regulation of wax anabolism|down regulation of wax synthesis|negative regulation of wax anabolism|negative regulation of wax formation|downregulation of wax anabolism|inhibition of wax formation|down-regulation of wax biosynthetic process|downregulation of wax biosynthetic process|inhibition of wax synthesis|inhibition of wax anabolism tb 2015-06-03T17:20:13Z biological_process owl:Class GO:0090130 biolink:NamedThing tissue migration The process in which the population of cells that make up a tissue undergo directed movement. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:13:55Z biological_process owl:Class GO:1900482 biolink:NamedThing positive regulation of diacylglycerol biosynthetic process Any process that activates or increases the frequency, rate or extent of diacylglycerol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of diacylglycerol anabolism|up-regulation of diacylglycerol biosynthesis|activation of diacylglycerol anabolism|positive regulation of diacylglycerol biosynthesis|upregulation of diacylglycerol synthesis|positive regulation of diacylglycerol formation|upregulation of diacylglycerol biosynthesis|up regulation of diacylglycerol synthesis|up regulation of diacylglycerol biosynthesis|activation of diacylglycerol formation|upregulation of diacylglycerol formation|up-regulation of diacylglycerol biosynthetic process|up-regulation of diacylglycerol formation|up-regulation of diacylglycerol anabolism|up regulation of diacylglycerol anabolism|up regulation of diacylglycerol biosynthetic process|activation of diacylglycerol biosynthesis|up regulation of diacylglycerol formation|activation of diacylglycerol synthesis|up-regulation of diacylglycerol synthesis|positive regulation of diacylglycerol synthesis|positive regulation of diacylglycerol anabolism|activation of diacylglycerol biosynthetic process|upregulation of diacylglycerol biosynthetic process al 2012-05-02T10:09:18Z biological_process owl:Class GO:0102100 biolink:NamedThing mycothiol-arsenate ligase activity Catalysis of the reaction: arsenate + mycothiol <=> mycothiol-arsenate conjugate + H2O. tmpzr1t_l9r_go_relaxed.owl EC:2.8.4.2|MetaCyc:RXN-11187|RHEA:27349 molecular_function owl:Class GO:0050497 biolink:NamedThing alkylthioltransferase activity Catalysis of the transfer of an alkylthio group from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring alkylthio groups EC:2.8.4.- molecular_function owl:Class GO:0046120 biolink:NamedThing deoxyribonucleoside biosynthetic process The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside). tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside synthesis|deoxyribonucleoside formation|deoxyribonucleoside anabolism|deoxyribonucleoside biosynthesis biological_process owl:Class GO:0097209 biolink:NamedThing epidermal lamellar body A specialized secretory organelle found in keratinocytes and involved in the formation of an impermeable, lipid-containing membrane that serves as a water barrier and is required for correct skin barrier function. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-04T02:34:27Z cellular_component owl:Class GO:0075120 biolink:NamedThing suppression by symbiont of host G protein-coupled receptor signal transduction Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of the host G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host G-protein coupled receptor protein signal transduction|negative regulation by symbiont of host signal transduction mediated by G-protein beta subunit|negative regulation by symbiont of host signal transduction mediated by G-protein alpha subunit|negative regulation by symbiont of host signal transduction mediated by G-protein gamma subunit|negative regulation by symbiont of host G protein-coupled receptor signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "negative regulation by host of symbiont G protein-coupled receptor signal transduction ; GO:0075089". GO:0075126|GO:0075123|GO:0075129 biological_process owl:Class GO:0070681 biolink:NamedThing glutaminyl-tRNAGln biosynthesis via transamidation A tRNA aminoacylation process in which glutaminyl-tRNAGln is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating glutamyl-tRNAGlx synthetase generates the misacylated L-glutamyl-tRNAGln species, and in the second step it is amidated to the correctly charged L-glutaminyl-tRNAGln by a glutamyl-tRNAGln amidotransferase. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5921 mah 2009-06-02T03:15:57Z biological_process owl:Class GO:0030116 biolink:NamedThing glial cell-derived neurotrophic factor receptor binding A growth factor that binds selectively and non-covalently to glial cell-derived neurotrophic factor receptors. tmpzr1t_l9r_go_relaxed.owl glial cell line-derived neurotrophic factor receptor ligand|glial cell line-derived neurotrophic factor receptor binding molecular_function owl:Class GO:0045343 biolink:NamedThing regulation of MHC class I biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class I. tmpzr1t_l9r_go_relaxed.owl regulation of MHC class I formation|regulation of major histocompatibility complex class I biosynthesis|regulation of MHC class I biosynthesis|regulation of MHC class I synthesis|regulation of major histocompatibility complex class I biosynthetic process|regulation of MHC class I anabolism biological_process owl:Class GO:0018882 biolink:NamedThing (+)-camphor metabolic process The chemical reactions and pathways involving (+)-camphor, a bicyclic monoterpene ketone which is one of the major components in the leaves of common sage. Camphor exists in two enantiomers, but the (+)-isomer is more widely distributed. tmpzr1t_l9r_go_relaxed.owl camphor metabolic process|camphor metabolism|(+)-camphor metabolism UM-BBD_pathwayID:cam biological_process owl:Class GO:2000614 biolink:NamedThing positive regulation of thyroid-stimulating hormone secretion Any process that activates or increases the frequency, rate or extent of thyroid-stimulating hormone secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of TSH secretion|positive regulation of thyroid stimulating hormone secretion yaf 2011-04-18T12:56:22Z biological_process owl:Class GO:0033408 biolink:NamedThing UCG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UCG codon. tmpzr1t_l9r_go_relaxed.owl TCG codon-amino acid adaptor activity|serine tRNA Note that in the standard genetic code, TCG codes for serine. molecular_function owl:Class GO:0018284 biolink:NamedThing iron incorporation into protein via tetrakis-L-cysteinyl iron The incorporation of iron into a protein via tetrakis-L-cysteinyl iron (there is no exogenous sulfur, so this modification by itself does not produce an iron-sulfur protein). tmpzr1t_l9r_go_relaxed.owl RESID:AA0136 biological_process owl:Class GO:0090560 biolink:NamedThing 2-(3-amino-3-carboxypropyl)histidine synthase activity Catalysis of the reaction S-adenosyl-L-methionine + L-histidine-[translation elongation factor 2] = S-methyl-5-thioadenosine + 2-[(3S)-3-amino-3-carboxypropyl]-L-histidine-[translation elongation factor 2]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11371|Reactome:R-HSA-5358494|RHEA:36783 tb 2014-03-27T14:58:50Z molecular_function owl:Class GO:1905293 biolink:NamedThing negative regulation of neural crest cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of neural crest cell differentiation. tmpzr1t_l9r_go_relaxed.owl down-regulation of neural crest cell differentiation|down regulation of neural crest cell differentiation|downregulation of neural crest cell differentiation|inhibition of neural crest cell differentiation rl 2016-06-28T15:02:09Z biological_process owl:Class GO:1905403 biolink:NamedThing negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|inhibition of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|down regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|negative regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|negative regulation of activated CD8-positive, alpha-beta T cell apoptosis|down regulation of activated CD8-positive, alpha-beta T-cell apoptosis|down regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|down regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|downregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|negative regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|down-regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|downregulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|downregulation of activated CD8-positive, alpha-beta T-cell apoptosis|downregulation of activated CD8-positive, alpha-beta T-cell apoptotic process|down-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|down-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|inhibition of activated CD8-positive, alpha-beta T-cell apoptosis|downregulation of activated CD8-positive, alpha-beta T cell apoptotic process|inhibition of activated CD8-positive, alpha-beta T cell apoptosis|inhibition of activated CD8-positive, alpha-beta T cell apoptotic process|downregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|inhibition of activated CD8-positive, alpha-beta T lymphocyte apoptosis|down regulation of activated CD8-positive, alpha-beta T cell apoptotic process|inhibition of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|down-regulation of activated CD8-positive, alpha-beta T cell apoptosis|down-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|inhibition of activated CD8-positive, alpha-beta T-lymphocyte apoptosis|inhibition of activated CD8-positive, alpha-beta T-cell apoptotic process|down regulation of activated CD8-positive, alpha-beta T cell apoptosis|downregulation of activated CD8-positive, alpha-beta T cell apoptosis|negative regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|down regulation of activated CD8-positive, alpha-beta T-cell apoptotic process|down-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis|down-regulation of activated CD8-positive, alpha-beta T-cell apoptosis|down regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|negative regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process|negative regulation of activated CD8-positive, alpha-beta T-cell apoptosis|down-regulation of activated CD8-positive, alpha-beta T cell apoptotic process|negative regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis pga 2016-08-25T09:14:03Z biological_process owl:Class GO:0018649 biolink:NamedThing tetrahydrofuran hydroxylase activity Catalysis of the reaction: tetrahydrofuran + O2 + 2 H+ + 2 e- = H2O + 2-hydroxytetrahydrofuran. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0017 molecular_function owl:Class GO:0007497 biolink:NamedThing posterior midgut development The process whose specific outcome is the progression of the posterior midgut over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901676 biolink:NamedThing positive regulation of histone H3-K27 acetylation Any process that activates or increases the frequency, rate or extent of histone H3-K27 acetylation. tmpzr1t_l9r_go_relaxed.owl upregulation of histone H3 acetylation at K27|up regulation of histone H3-K27 acetylation|up regulation of histone H3 acetylation at K27|up-regulation of histone H3-K27 acetylation|activation of histone H3-K27 acetylation|up-regulation of histone H3 acetylation at K27|positive regulation of histone H3 acetylation at K27|up regulation of histone H3K27 acetylation|up-regulation of histone H3K27 acetylation|positive regulation of histone H3K27 acetylation|activation of histone H3K27 acetylation|upregulation of histone H3K27 acetylation|activation of histone H3 acetylation at K27|upregulation of histone H3-K27 acetylation vk 2012-11-22T12:06:45Z biological_process owl:Class GO:0005835 biolink:NamedThing fatty acid synthase complex A multienzyme complex that catalyses the synthesis of fatty acids from acetyl CoA. tmpzr1t_l9r_go_relaxed.owl cytosolic type I fatty acid synthase complex|fatty acid synthetase complex|cytosolic FAS complex|FAS complex|cytosolic type I FAS complex|cytosolic fatty acid synthase complex|holo-[acyl-carrier-protein] synthase complex Wikipedia:Fatty_acid_synthetase_complex GO:0031374|GO:0031373 cellular_component owl:Class GO:0050556 biolink:NamedThing deacetylisoipecoside synthase activity Catalysis of the reaction: deacetylisoipecoside + H(2)O = dopamine + secologanin. tmpzr1t_l9r_go_relaxed.owl deacetylisoipecoside dopamine-lyase (secologanin-forming)|deacetylisoipecoside dopamine-lyase activity RHEA:21756|KEGG_REACTION:R05750|EC:4.3.3.3|MetaCyc:4.3.3.3-RXN molecular_function owl:Class GO:0015311 biolink:NamedThing monoamine:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + monoamine(in) = H+(in) + monoamine(out). tmpzr1t_l9r_go_relaxed.owl monoamine:hydrogen antiporter activity molecular_function owl:Class GO:2000414 biolink:NamedThing negative regulation of fibronectin-dependent thymocyte migration Any process that stops, prevents or reduces the frequency, rate or extent of fibronectin-dependent thymocyte migration. tmpzr1t_l9r_go_relaxed.owl negative regulation of fibronectin-dependent thymic lymphocyte migration|negative regulation of fibronectin-dependent immature T lymphocyte migration|negative regulation of fibronectin-dependent immature T-lymphocyte migration|negative regulation of fibronectin-dependent immature T-cell migration|negative regulation of fibronectin-dependent immature T cell migration mah 2011-02-23T01:38:37Z biological_process owl:Class GO:0002881 biolink:NamedThing negative regulation of chronic inflammatory response to non-antigenic stimulus Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl down-regulation of chronic inflammatory response to non-antigenic stimulus|down regulation of chronic inflammatory response to non-antigenic stimulus|downregulation of chronic inflammatory response to non-antigenic stimulus|inhibition of chronic inflammatory response to non-antigenic stimulus biological_process owl:Class GO:1905443 biolink:NamedThing regulation of clathrin coat assembly Any process that modulates the frequency, rate or extent of clathrin coat assembly. tmpzr1t_l9r_go_relaxed.owl regulation of clathrin cage assembly bf 2016-09-15T14:38:22Z biological_process owl:Class GO:0022872 biolink:NamedThing protein-N(PI)-phosphohistidine-mannitol phosphotransferase system transmembrane transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + mannitol(out) = protein histidine + mannitol phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl mannitol PTS transporter activity molecular_function owl:Class GO:0042589 biolink:NamedThing zymogen granule membrane The lipid bilayer surrounding a zymogen granule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003873 biolink:NamedThing 6-phosphofructo-2-kinase activity Catalysis of the reaction: beta-D-fructose 6-phosphate + ATP = beta-D-fructose 2,6-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 6-phosphofructose 2-kinase activity|6-phosphofructo-2-kinase (phosphorylating)|ATP:D-fructose-6-phosphate 2-phosphotransferase activity|fructose 6-phosphate 2-kinase activity|ATP:beta-D-fructose-6-phosphate 2-phosphotransferase activity|phosphofructokinase 2 activity Reactome:R-HSA-71802|RHEA:15653|MetaCyc:6-PHOSPHOFRUCTO-2-KINASE-RXN|KEGG_REACTION:R02732|EC:2.7.1.105 molecular_function owl:Class GO:0006700 biolink:NamedThing C21-steroid hormone biosynthetic process The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones. tmpzr1t_l9r_go_relaxed.owl C21-steroid hormone synthesis|C21-steroid hormone anabolism|C21-steroid hormone biosynthesis|C21-steroid hormone formation biological_process owl:Class GO:0002189 biolink:NamedThing ribose phosphate diphosphokinase complex A protein complex having ribose phosphate diphosphokinase activity. tmpzr1t_l9r_go_relaxed.owl phosphoribosylpyrophosphate synthetase complex|PRPP synthetase complex In mammals, the complex consists of two non-identical catalytic subunits and two non-identical regulatory subunits. hjd 2011-06-27T02:49:33Z cellular_component owl:Class GO:2001070 biolink:NamedThing starch binding Binding to starch. tmpzr1t_l9r_go_relaxed.owl amylum binding|amidon binding jl 2011-09-14T12:02:50Z molecular_function owl:Class GO:2000729 biolink:NamedThing positive regulation of mesenchymal cell proliferation involved in ureter development Any process that activates or increases the frequency, rate or extent of mesenchymal cell proliferation involved in ureter development. tmpzr1t_l9r_go_relaxed.owl positive regulation of ureteral mesenchymal cell proliferation|positive regulation of ureter mesenchymal cell proliferation yaf 2011-06-10T02:27:19Z biological_process owl:Class GO:0052391 biolink:NamedThing induction by symbiont of defense-related host calcium ion flux The activation by an organism of a flux of calcium ions that occurs as part of the defense response of a host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of host Ca2+ flux|positive regulation by organism of defense-related calcium ion flux in other organism involved in symbiotic interaction|positive regulation by organism of defense-related host Ca2+ flux|up-regulation by symbiont of defense-related host calcium ion flux|stimulation by symbiont of defense-related host calcium ion flux|activation by organism of host calcium ion flux|upregulation by symbiont of defense-related host calcium ion flux|positive regulation by symbiont of defense-related host calcium ion flux|activation by symbiont of defense-related host calcium ion flux|activation by organism of host Ca2+ flux|up regulation by symbiont of defense-related host calcium ion flux|induction by organism of defense-related calcium ion flux in other organism involved in symbiotic interaction GO:0052065|GO:0052389|GO:0052265 biological_process owl:Class GO:0072738 biolink:NamedThing cellular response to diamide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diamide (N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0072737 biolink:NamedThing response to diamide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diamide (N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide) stimulus. tmpzr1t_l9r_go_relaxed.owl response to N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0097436 biolink:NamedThing entry into dormancy The dormancy process that results in entry into dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. tmpzr1t_l9r_go_relaxed.owl induction of dormancy pr 2012-12-05T14:55:49Z biological_process owl:Class GO:0032227 biolink:NamedThing negative regulation of synaptic transmission, dopaminergic Any process that stops, prevents, or reduces the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine. tmpzr1t_l9r_go_relaxed.owl inhibition of synaptic transmission, dopaminergic|down-regulation of synaptic transmission, dopaminergic|down regulation of synaptic transmission, dopaminergic|downregulation of synaptic transmission, dopaminergic biological_process owl:Class GO:0032225 biolink:NamedThing regulation of synaptic transmission, dopaminergic Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050422 biolink:NamedThing strictosidine beta-glucosidase activity Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = D-glucose + strictosidine aglycone. tmpzr1t_l9r_go_relaxed.owl strictosidine beta-D-glucohydrolase activity|strictosidine b-glucosidase activity MetaCyc:STRICTOSIDINE-BETA-GLUCOSIDASE-RXN|KEGG_REACTION:R03820|EC:3.2.1.105|RHEA:12917 molecular_function owl:Class GO:0033552 biolink:NamedThing response to vitamin B3 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B3 stimulus. tmpzr1t_l9r_go_relaxed.owl response to nicotinamide|response to niacin biological_process owl:Class GO:0005609 biolink:NamedThing laminin-4 complex A laminin complex composed of alpha2, beta2 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-221 complex cellular_component owl:Class GO:1900601 biolink:NamedThing endocrocin catabolic process The chemical reactions and pathways resulting in the breakdown of endocrocin. tmpzr1t_l9r_go_relaxed.owl endocrocin catabolism|endocrocin degradation|endocrocin breakdown di 2012-05-15T06:57:34Z biological_process owl:Class GO:0110066 biolink:NamedThing negative regulation of interphase mitotic telomere clustering Any process that stops, prevents, or reduces the frequency, rate or extent of mitotic telomere clustering during interphase. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitotic telomere clustering during interphase|telomere dispersion during interphase kmv 2017-11-17T22:11:59Z biological_process owl:Class GO:0102680 biolink:NamedThing campest-4-en-3-one hydroxylase activity Catalysis of the reaction: H+ + campest-4-en-3-one + O2 + NADPH <=> (22S)-22-hydroxycampest-4-en-3-one + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4231 molecular_function owl:Class GO:0004952 biolink:NamedThing dopamine neurotransmitter receptor activity Combining with the neurotransmitter dopamine to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021749 biolink:NamedThing ventral cochlear nucleus development The process whose specific outcome is the progression of the ventral cochlear nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021747 biolink:NamedThing cochlear nucleus development The process whose specific outcome is the progression of the cochlear nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032290 biolink:NamedThing peripheral nervous system myelin formation The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by Schwann cells in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl myelin formation in peripheral nervous system https://github.com/geneontology/go-ontology/issues/19106 biological_process owl:Class GO:0102824 biolink:NamedThing UDP-L-rhamnose:quercetin 3-O-rhamnosyltransferase activity Catalysis of the reaction: quercetin-7-olate + UDP-L-rhamnose <=> H+ + quercetin 3-O-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:61160|MetaCyc:RXN-8267 molecular_function owl:Class GO:0075199 biolink:NamedThing positive regulation of symbiont haustorium neck formation for entry into host Any process that activates, maintains or increases the frequency, rate or extent of symbiont haustorium neck formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0032090 biolink:NamedThing Pyrin domain binding Binding to a Pyrin (PAAD/DAPIN) domain, a protein-protein interaction domain that has the same fold as the Death domain. tmpzr1t_l9r_go_relaxed.owl PAAD domain binding|DAPIN domain binding molecular_function owl:Class GO:1905785 biolink:NamedThing negative regulation of anaphase-promoting complex-dependent catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of anaphase-promoting complex-dependent catabolic process. tmpzr1t_l9r_go_relaxed.owl vw 2017-01-09T10:16:23Z biological_process owl:Class GO:1905784 biolink:NamedThing regulation of anaphase-promoting complex-dependent catabolic process Any process that modulates the frequency, rate or extent of anaphase-promoting complex-dependent catabolic process. tmpzr1t_l9r_go_relaxed.owl vw 2017-01-09T10:16:14Z biological_process owl:Class GO:0032245 biolink:NamedThing regulation of purine nucleoside transport Any process that modulates the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061791 biolink:NamedThing GTPase motor activity A motor activity driven by GTP hydrolysis. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-09T13:17:29Z molecular_function owl:Class GO:0047184 biolink:NamedThing 1-acylglycerophosphocholine O-acyltransferase activity Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine + acyl-CoA = phosphatidylcholine + CoA. tmpzr1t_l9r_go_relaxed.owl acyl coenzyme A-monoacylphosphatidylcholine acyltransferase activity|lysolecithin acyltransferase activity|lysophosphatidylcholine acyltransferase activity|1-acyl-sn-glycero-3-phosphocholine acyltransferase activity|lysophosphatide acyltransferase activity|acyl-CoA:1-acyl-sn-glycero-3-phosphocholine O-acyltransferase activity|acyl-CoA:1-acyl-glycero-3-phosphocholine transacylase activity Reactome:R-HSA-1482794|EC:2.3.1.23|MetaCyc:2.3.1.23-RXN|RHEA:12937 GO:0000507 molecular_function owl:Class GO:0030215 biolink:NamedThing semaphorin receptor binding Binding to a semaphorin receptor. tmpzr1t_l9r_go_relaxed.owl plexin ligand|plexin binding|semaphorin receptor ligand molecular_function owl:Class GO:0045918 biolink:NamedThing negative regulation of cytolysis Any process that stops, prevents, or reduces the frequency, rate or extent of cytolysis. tmpzr1t_l9r_go_relaxed.owl down-regulation of cytolysis|inhibition of cytolysis|down regulation of cytolysis|downregulation of cytolysis biological_process owl:Class GO:0005544 biolink:NamedThing calcium-dependent phospholipid binding Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097715 biolink:NamedThing cellular response to viscosity Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a viscosity stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2016-08-23T14:34:05Z biological_process owl:Class GO:0047465 biolink:NamedThing N-acylglucosamine-6-phosphate 2-epimerase activity Catalysis of the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosmamine 6-phosphate 2-epimerase activity|N-acetylmannosamine-6-phosphate 2-epimerase activity|acylglucosamine-6-phosphate 2-epimerase activity|acylmannosamine phosphate 2-epimerase activity|N-acyl-D-glucosamine-6-phosphate 2-epimerase activity|acylglucosamine phosphate 2-epimerase activity MetaCyc:5.1.3.9-RXN|EC:5.1.3.9|RHEA:23932 molecular_function owl:Class GO:0050847 biolink:NamedThing progesterone receptor signaling pathway Any series of molecular signals generated as a consequence of a progesterone binding to its receptor. tmpzr1t_l9r_go_relaxed.owl progesterone receptor signalling pathway biological_process owl:Class GO:0021964 biolink:NamedThing rubrospinal tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902283 biolink:NamedThing negative regulation of primary amine oxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of primary amine oxidase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of amine oxidase (copper-containing) activity|down regulation of amine oxidase (copper-containing) activity|negative regulation of amine oxidase (copper-containing) activity|inhibition of primary-amine:oxygen oxidoreductase (deaminating) activity|downregulation of primary amine oxidase activity|inhibition of primary amine oxidase activity|down-regulation of primary-amine:oxygen oxidoreductase (deaminating) activity|down regulation of primary amine oxidase activity|downregulation of primary-amine:oxygen oxidoreductase (deaminating) activity|down regulation of primary-amine:oxygen oxidoreductase (deaminating) activity|inhibition of amine oxidase (copper-containing) activity|downregulation of amine oxidase (copper-containing) activity|down-regulation of primary amine oxidase activity|negative regulation of primary-amine:oxygen oxidoreductase (deaminating) activity ecu 2013-07-08T13:27:59Z biological_process owl:Class GO:0035693 biolink:NamedThing NOS2-CD74 complex A protein complex comprising nitric oxide synthase 2 and CD74. This stable complex formation is thought to prevent CD74 degradation by caspases. tmpzr1t_l9r_go_relaxed.owl bf 2011-02-25T11:35:38Z cellular_component owl:Class GO:0010276 biolink:NamedThing phytol kinase activity Catalysis of the reaction: phytol + CTP = phytyl monophosphate + CDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7683|EC:2.7.1.182|RHEA:38055 molecular_function owl:Class GO:0042580 biolink:NamedThing mannosome A specialised tubular organelle, assembled in hexagonal bundles within an external membrane. Mannosomes are specific to molluscs and are thought to be involved in a general stress reaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004834 biolink:NamedThing tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. tmpzr1t_l9r_go_relaxed.owl L-serine hydro-lyase (adding indoleglycerol-phosphate)|tryptophan synthetase activity|L-tryptophan synthetase activity|L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]|indoleglycerol phosphate aldolase activity|tryptophan desmolase activity MetaCyc:TRYPSYN-RXN|RHEA:10532|EC:4.2.1.20|KEGG_REACTION:R02722 molecular_function owl:Class GO:0003122 biolink:NamedThing norepinephrine-mediated vasodilation A vasodilation process resulting from secretion of norepinephrine into the bloodstream or released by nerve endings. tmpzr1t_l9r_go_relaxed.owl regulation of vasodilation by neuronal noradrenaline|regulation of vasodilation by norepinephrine|regulation of vasodilation by noradrenaline|regulation of vasodilation by circulating noradrenaline|regulation of vasodilation by circulating norepinephrine|regulation of vasodilation by neuronal norepinephrine GO:0003126|GO:0003125 biological_process owl:Class GO:0052129 biolink:NamedThing negative energy taxis The directed movement of a motile cell or organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030958 biolink:NamedThing RITS complex A protein complex required for heterochromatin assembly; contains an Argonaute homolog, a chromodomain protein, and at least one additional protein; named for RNA-induced initiation of transcriptional gene silencing. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035408 biolink:NamedThing histone H3-T6 phosphorylation The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 6 of the histone. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-24T10:12:51Z biological_process owl:Class GO:0090135 biolink:NamedThing actin filament branching The formation of daughter actin filament branches at an angle on the sides of preexisting mother filaments. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T01:53:14Z biological_process owl:Class GO:0050192 biolink:NamedThing phosphoglycerate phosphatase activity Catalysis of the reaction: 2-phospho-D-glycerate + H(2)O = D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl glycerophosphate phosphatase activity|D-glycerate-2-phosphate phosphohydrolase activity|D-2-phosphoglycerate phosphatase activity RHEA:21156|EC:3.1.3.20|MetaCyc:PHOSPHOGLYCERATE-PHOSPHATASE-RXN|KEGG_REACTION:R01748 molecular_function owl:Class GO:0106213 biolink:NamedThing kinetochore disassembly involved in meiotic chromosome organization The cell cycle process in which outer kinetochore components delocalize from the centromere, contributing to the rearrangement of chromosomes into the orientation characteristic of meiotic prophase I. tmpzr1t_l9r_go_relaxed.owl kinetochore disassembly from spindle pole body involved in chromosome organization involved in meiotic cell cycle hjd 2019-06-25T18:31:06Z biological_process owl:Class GO:0006571 biolink:NamedThing tyrosine biosynthetic process The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl tyrosine biosynthesis|tyrosine synthesis|tyrosine formation|tyrosine anabolism https://github.com/geneontology/go-ontology/issues/20583 biological_process owl:Class GO:0006605 biolink:NamedThing protein targeting The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. tmpzr1t_l9r_go_relaxed.owl nascent polypeptide association|protein sorting along secretory pathway Wikipedia:Protein_targeting Note that protein targeting encompasses the transport of the protein to the specified location, and may also include additional steps such as protein processing. biological_process owl:Class GO:0042458 biolink:NamedThing nopaline catabolic process to proline The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline. tmpzr1t_l9r_go_relaxed.owl nopaline breakdown to proline|nopaline degradation to proline MetaCyc:NOPALINEDEG-PWY biological_process owl:Class GO:0140065 biolink:NamedThing peptide butyryltransferase activity Catalysis of the reaction: butyryl-CoA + lysine in peptide = CoA + N-butyryl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl protein butyryltransferase activity pg 2017-07-20T16:46:49Z molecular_function owl:Class GO:0048893 biolink:NamedThing afferent axon development in lateral line nerve The process whose specific outcome is the progression of an afferent axon in a lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in any lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051840 biolink:NamedThing negative regulation by host of cytolysis of symbiont cells Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down-regulation by host of cytolysis of symbiont cells|downregulation by host of cytolysis of symbiont cells|inhibition by host of cytolysis of symbiont cells|down regulation by host of cytolysis of symbiont cells biological_process owl:Class GO:0002848 biolink:NamedThing positive regulation of T cell tolerance induction to tumor cell Any process that activates or increases the frequency, rate, or extent of T cell tolerance induction to tumor cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of T cell tolerance induction to tumor cell|activation of T cell tolerance induction to tumor cell|upregulation of T cell tolerance induction to tumor cell|stimulation of T cell tolerance induction to tumor cell|up regulation of T cell tolerance induction to tumor cell biological_process owl:Class GO:1901063 biolink:NamedThing guaiacyl lignin biosynthetic process The chemical reactions and pathways resulting in the formation of guaiacyl lignin. tmpzr1t_l9r_go_relaxed.owl guaiacyl lignin biosynthesis|guaiacyl lignin synthesis|guaiacyl lignin anabolism|G-lignin biosynthetic process|guaiacyl lignin formation tt 2012-06-29T03:29:53Z biological_process owl:Class GO:0090474 biolink:NamedThing arg-arg specific dibasic protein processing Any protein processing achieved by the cleavage of a peptide bond after two consecutive arginine amino acid residues within a protein. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-01T10:42:30Z biological_process owl:Class GO:0055025 biolink:NamedThing positive regulation of cardiac muscle tissue development Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle tissue development. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiac muscle development|activation of cardiac muscle development|upregulation of cardiac muscle development|up regulation of cardiac muscle development|positive regulation of heart muscle development|stimulation of cardiac muscle development biological_process owl:Class GO:0043418 biolink:NamedThing homocysteine catabolic process The chemical reactions and pathways resulting in the breakdown of homocysteine, the amino acid alpha-amino-gamma-mercaptobutanoic acid. tmpzr1t_l9r_go_relaxed.owl homocysteine catabolism|homocysteine degradation|homocysteine breakdown biological_process owl:Class GO:0061429 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by oleic acid Any process involving oleic acid that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-07T09:54:49Z biological_process owl:Class GO:0052344 biolink:NamedThing positive regulation by symbiont of host phytoalexin production Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the production of phytoalexins as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up regulation by symbiont of host phytoalexin production|activation by symbiont of host phytoalexin production|positive regulation by organism of phytoalexin production in other organism involved in symbiotic interaction|stimulation by symbiont of host phytoalexin production|up-regulation by symbiont of host phytoalexin production|upregulation by symbiont of host phytoalexin production GO:0052329 biological_process owl:Class GO:1902295 biolink:NamedThing synthesis of RNA primer involved in cell cycle DNA replication Any DNA replication, synthesis of RNA primer that is involved in cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl replication priming involved in cell cycle DNA replication|DNA replication, synthesis of RNA primer involved in cell cycle DNA replication jl 2013-07-09T16:06:26Z biological_process owl:Class GO:0102591 biolink:NamedThing delphinidin 7-O-glucoside acyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: delphinidin 3-O-rutinoside-7-O-glucoside + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> delphinidin 3-O-rutinoside-7-O-(6-O-(p-hydroxybenzoyl)-glucoside) + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15352 molecular_function owl:Class GO:0019317 biolink:NamedThing fucose catabolic process The chemical reactions and pathways resulting in the breakdown of fucose (6-deoxygalactose). tmpzr1t_l9r_go_relaxed.owl fucose catabolism|fucose degradation|fucose breakdown MetaCyc:FUCCAT-PWY biological_process owl:Class GO:1903056 biolink:NamedThing regulation of melanosome organization Any process that modulates the frequency, rate or extent of melanosome organization. tmpzr1t_l9r_go_relaxed.owl regulation of melanosome organization and biogenesis|regulation of melanosome organisation Lack of the transcription factor Zeb2 Q9R0G7 leads to spherical melanosomes with irregular borders, in contrast to the rod-shaped melanosomes of ZEB2MCWT hair follicles rl 2014-05-27T13:27:49Z biological_process owl:Class GO:0045058 biolink:NamedThing T cell selection The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation. tmpzr1t_l9r_go_relaxed.owl T lymphocyte selection|T-cell selection|T-lymphocyte selection Wikipedia:Thymocyte biological_process owl:Class GO:0042837 biolink:NamedThing D-glucarate biosynthetic process The chemical reactions and pathways resulting in the formation of D-glucarate, the D-enantiomer of glucarate. tmpzr1t_l9r_go_relaxed.owl D-glucarate anabolism|D-glucarate formation|saccharate biosynthesis|D-glucarate biosynthesis|saccharate biosynthetic process|D-glucarate synthesis biological_process owl:Class GO:0019393 biolink:NamedThing glucarate biosynthetic process The chemical reactions and pathways resulting in the formation of glucarate, the anion of glucaric acid. tmpzr1t_l9r_go_relaxed.owl glucarate anabolism|glucarate formation|glucarate biosynthesis|glucarate synthesis biological_process owl:Class GO:0010299 biolink:NamedThing detoxification of cobalt ion Any process that reduces or removes the toxicity of cobalt ion. These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060196 biolink:NamedThing positive regulation of antisense RNA transcription Any process that increases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990246 biolink:NamedThing uniplex complex A calcium channel complex in the mitochondrial inner membrane capable of highly-selective calcium channel activity. Its components include the EF-hand-containing proteins mitochondrial calcium uptake 1 (MICU1) and MICU2, the pore-forming subunit mitochondrial calcium uniporter (MCU) and its paralog MCUb, and the MCU regulator EMRE. tmpzr1t_l9r_go_relaxed.owl mitochondrial uniporter complex|mitochondrial uniporter holocomplex sp 2013-12-04T06:44:35Z cellular_component owl:Class GO:0034922 biolink:NamedThing 4,5-dihydroxypyrene dioxygenase activity Catalysis of the reaction: 4,5-dihydroxypyrene + O2 = phenanthrene-4,5-dicarboxylate + 2 H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0936|EC:1.13.11.- molecular_function owl:Class GO:0061973 biolink:NamedThing membrane bone morphogenesis The process in which bone which forms deep in the organism are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T18:21:09Z biological_process owl:Class GO:2000595 biolink:NamedThing regulation of optic nerve formation Any process that modulates the frequency, rate or extent of optic nerve formation. tmpzr1t_l9r_go_relaxed.owl regulation of CN II formation|regulation of CN II biosynthesis yaf 2011-04-11T03:41:30Z biological_process owl:Class GO:0090564 biolink:NamedThing protein-phosphocysteine-glucose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + glucose(out) = protein cysteine + glucose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl tb 2014-04-08T15:03:08Z molecular_function owl:Class GO:0045631 biolink:NamedThing regulation of mechanoreceptor differentiation Any process that modulates the frequency, rate or extent of mechanoreceptor differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019464 biolink:NamedThing glycine decarboxylation via glycine cleavage system The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. tmpzr1t_l9r_go_relaxed.owl glycine cleavage system MetaCyc:GLYCLEAV-PWY biological_process owl:Class GO:0051995 biolink:NamedThing Se-methyltransferase activity Catalysis of the transfer of a methyl group to the selenium atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl ai 2010-07-16T04:48:08Z molecular_function owl:Class GO:0071931 biolink:NamedThing positive regulation of transcription involved in G1/S transition of mitotic cell cycle Any process that activates or increases transcription as part of the G1/S transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter during G1/S phase of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter involved in G1/S transition of mitotic cell cycle mah 2010-09-29T11:15:34Z biological_process owl:Class GO:0062097 biolink:NamedThing chemosynthesis The cellular metabolic process in which organic chemical compounds are synthesized from carbon-containing molecules and nutrients using energy obtained from the oxidation of inorganic compounds or methane. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chemosynthesis dph 2018-11-29T13:18:55Z biological_process owl:Class GO:0050882 biolink:NamedThing voluntary musculoskeletal movement The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system that can be controlled at will. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030863 biolink:NamedThing cortical cytoskeleton The portion of the cytoskeleton that lies just beneath the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1900216 biolink:NamedThing positive regulation of apoptotic process involved in metanephric collecting duct development Any process that activates or increases the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development. tmpzr1t_l9r_go_relaxed.owl upregulation of programmed cell death by apoptosis of metanephric collecting duct development|upregulation of signaling (initiator) caspase activity of metanephric collecting duct development|up-regulation of apoptosis of metanephric collecting duct development|positive regulation of programmed cell death by apoptosis of metanephric collecting duct development|up-regulation of apoptotic process involved in metanephric collecting duct development|up-regulation of apoptotic programmed cell death of metanephric collecting duct development|upregulation of apoptotic program of metanephric collecting duct development|upregulation of apoptotic process involved in metanephric collecting duct development|positive regulation of apoptotic cell death of metanephric collecting duct development|up regulation of programmed cell death by apoptosis of metanephric collecting duct development|activation of apoptotic programmed cell death of metanephric collecting duct development|activation of apoptotic process of metanephric collecting duct development|up-regulation of type I programmed cell death of metanephric collecting duct development|up regulation of type I programmed cell death of metanephric collecting duct development|upregulation of apoptosis of metanephric collecting duct development|up regulation of apoptotic programmed cell death of metanephric collecting duct development|activation of apoptotic cell death of metanephric collecting duct development|activation of programmed cell death by apoptosis of metanephric collecting duct development|up regulation of apoptotic program of metanephric collecting duct development|activation of type I programmed cell death of metanephric collecting duct development|up-regulation of apoptotic cell death of metanephric collecting duct development|activation of apoptotic program of metanephric collecting duct development|activation of apoptosis of metanephric collecting duct development|up-regulation of apoptotic process of metanephric collecting duct development|positive regulation of apoptotic program of metanephric collecting duct development|up-regulation of apoptotic program of metanephric collecting duct development|up regulation of apoptotic process involved in metanephric collecting duct development|positive regulation of type I programmed cell death of metanephric collecting duct development|up regulation of apoptotic cell death of metanephric collecting duct development|activation of apoptotic process involved in metanephric collecting duct development|up regulation of apoptosis of metanephric collecting duct development|up regulation of signaling (initiator) caspase activity of metanephric collecting duct development|positive regulation of signaling (initiator) caspase activity of metanephric collecting duct development|positive regulation of apoptotic process of metanephric collecting duct development|positive regulation of apoptosis of metanephric collecting duct development|up regulation of apoptotic process of metanephric collecting duct development|upregulation of apoptotic programmed cell death of metanephric collecting duct development|upregulation of apoptotic cell death of metanephric collecting duct development|activation of signaling (initiator) caspase activity of metanephric collecting duct development|up-regulation of programmed cell death by apoptosis of metanephric collecting duct development|upregulation of apoptotic process of metanephric collecting duct development|up-regulation of signaling (initiator) caspase activity of metanephric collecting duct development|positive regulation of apoptotic programmed cell death of metanephric collecting duct development|upregulation of type I programmed cell death of metanephric collecting duct development yaf 2012-03-22T10:53:39Z biological_process owl:Class GO:0034836 biolink:NamedThing 6-hydroxy-2-mercaptobenzothiazole monooxygenase activity Catalysis of the reaction: 6-hydroxy-2-mercaptobenzothiazole + 1/2 O2 = 6,7-dihydroxy-2-mercaptobenzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1181|EC:1.13.12.- molecular_function owl:Class GO:1902195 biolink:NamedThing isovaleryl-CoA(4-) metabolic process The chemical reactions and pathways involving isovaleryl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl isovaleryl-CoA(4-) metabolism ms 2013-06-06T09:55:55Z biological_process owl:Class GO:0071327 biolink:NamedThing cellular response to trehalose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:27:54Z biological_process owl:Class GO:0050106 biolink:NamedThing monomethyl-sulfatase activity Catalysis of the reaction: H(2)O + monomethyl sulfate = H(+) + methanol + sulfate. tmpzr1t_l9r_go_relaxed.owl monomethyl-sulfate sulfohydrolase activity|monomethyl-sulphatase activity EC:3.1.6.16|MetaCyc:MONOMETHYL-SULFATASE-RXN|RHEA:14221|KEGG_REACTION:R01145 molecular_function owl:Class GO:0048100 biolink:NamedThing wing disc anterior/posterior pattern formation The establishment, maintenance and elaboration of the anterior/posterior axis of the wing disc, a precursor to the wing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010445 biolink:NamedThing nuclear dicing body A small round nuclear body, measuring 0.2-0.8 microns in diameter that is diffusely distributed throughout the nucleoplasm. Several proteins known to be involved in miRNA processing have been localized to these structures. D-bodies are thought to be involved in primary-miRNA processing and/or storage/assembly of miRNA processing complexes. tmpzr1t_l9r_go_relaxed.owl D body cellular_component owl:Class GO:0021788 biolink:NamedThing chemoattraction of branchiomotor neuron axon in neural tube The process in which a branchiomotor neuron growth cone in the neural tube is directed to a specific target site in the neural tube in response to an attractive chemical cue. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis of branchiomotor neuron axon in neural tube biological_process owl:Class GO:0021786 biolink:NamedThing branchiomotor neuron axon guidance in neural tube The process in which a branchiomotor neuron growth cone in the neural tube is directed to a specific target site in the neural tube. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008687 biolink:NamedThing 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity Catalysis of the reaction: 3,4-dihydroxyphenylacetate + O(2) = 5-formyl-2-hydroxyhepta-2,4-dienedioate + H(+). tmpzr1t_l9r_go_relaxed.owl HPC dioxygenase activity|3,4-dihydroxyphenylacetate:oxygen 2,3-oxidoreductase (decyclizing)|3,4-dihydroxyphenylacetic acid 2,3-dioxygenase activity|homoprotocatechuate 2,3-dioxygenase activity KEGG_REACTION:R03303|EC:1.13.11.15|MetaCyc:1.13.11.15-RXN|UM-BBD_reactionID:r0364|RHEA:15633 molecular_function owl:Class GO:0106164 biolink:NamedThing positive regulation of exonucleolytic catabolism of deadenylated mRNA Any process that activates or increases the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl hjd 2019-01-15T15:39:19Z biological_process owl:Class GO:0098665 biolink:NamedThing serotonin receptor complex A protein complex that is capable of serotonin receptor activity. tmpzr1t_l9r_go_relaxed.owl 5-HT receptor complex|5HT receptor complex|5-hydroxytryptamine receptor complex dos 2016-12-21T12:24:56Z cellular_component owl:Class GO:1904287 biolink:NamedThing positive regulation of protein-pyridoxal-5-phosphate linkage Any process that activates or increases the frequency, rate or extent of protein-pyridoxal-5-phosphate linkage. tmpzr1t_l9r_go_relaxed.owl upregulation of protein-pyridoxal-5-phosphate linkage|activation of protein-pyridoxal-5-phosphate linkage|up regulation of protein-pyridoxal-5-phosphate linkage|stimulation of protein-pyridoxal-5-phosphate linkage|up-regulation of protein-pyridoxal-5-phosphate linkage mcc 2015-06-05T17:21:28Z biological_process owl:Class GO:0010356 biolink:NamedThing homogentisate geranylgeranyltransferase activity Catalysis of the reaction: homogentisic acid + geranylgeranyl diphosphate = 2-methyl-6-geranylgeranylplastoquinol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050040 biolink:NamedThing lactate 2-monooxygenase activity Catalysis of the reaction: (S)-lactate + O(2) = acetate + CO(2) + H(2)O. tmpzr1t_l9r_go_relaxed.owl lactate oxygenase activity|lactate oxidase activity|L-lactate monooxygenase activity|lactic oxygenase activity|lactate oxidative decarboxylase activity|lactate monooxygenase activity|lactic oxidase activity|L-lactate-2-monooxygenase activity|(S)-lactate:oxygen 2-oxidoreductase (decarboxylating) EC:1.13.12.4|MetaCyc:LACTATE-2-MONOOXYGENASE-RXN|RHEA:16513|KEGG_REACTION:R00319 molecular_function owl:Class GO:0042086 biolink:NamedThing 5-methyl-5,6,7,8-tetrahydromethanopterin-dependent methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule, dependent on the presence of 5-methyl-5,6,7,8-tetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034905 biolink:NamedThing 5-chloro-4-hydroxy-2-oxopentanate aldolase activity Catalysis of the reaction: 5-chloro-4-hydroxy-2-oxopentanate = pyruvate + chloroacetaldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1437|EC:4.1.3.- molecular_function owl:Class GO:0034467 biolink:NamedThing esterosome lumen The volume enclosed by the membrane of an esterosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019300 biolink:NamedThing rhamnose biosynthetic process The chemical reactions and pathways resulting in the formation of rhamnose, the hexose 6-deoxy-L-mannose. tmpzr1t_l9r_go_relaxed.owl rhamnose formation|rhamnose anabolism|rhamnose biosynthesis|rhamnose synthesis biological_process owl:Class GO:0140009 biolink:NamedThing L-aspartate import across plasma membrane The directed movement of L-aspartate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2017-03-13T10:59:51Z biological_process owl:Class GO:1902161 biolink:NamedThing positive regulation of cyclic nucleotide-gated ion channel activity Any process that activates or increases the frequency, rate or extent of cyclic nucleotide-gated ion channel activity. tmpzr1t_l9r_go_relaxed.owl up regulation of cyclic nucleotide activated ion channel activity|up regulation of cyclic nucleotide-gated ion channel activity|positive regulation of cyclic nucleotide-activated ion channel activity|activation of cyclic nucleotide activated ion channel activity|upregulation of cyclic nucleotide-activated ion channel activity|up-regulation of cyclic nucleotide-activated ion channel activity|positive regulation of cyclic nucleotide activated ion channel activity|upregulation of cyclic nucleotide gated ion channel activity|activation of cyclic nucleotide gated ion channel activity|up regulation of cyclic nucleotide-activated ion channel activity|positive regulation of cyclic nucleotide gated ion channel activity|activation of cyclic nucleotide-activated ion channel activity|up regulation of cyclic nucleotide gated ion channel activity|up-regulation of cyclic nucleotide gated ion channel activity|up-regulation of cyclic nucleotide activated ion channel activity|upregulation of cyclic nucleotide activated ion channel activity|up-regulation of cyclic nucleotide-gated ion channel activity|upregulation of cyclic nucleotide-gated ion channel activity|activation of cyclic nucleotide-gated ion channel activity sl 2013-05-21T19:24:48Z biological_process owl:Class GO:0007522 biolink:NamedThing visceral muscle development The process whose specific outcome is the progression of the visceral muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004453 biolink:NamedThing juvenile-hormone esterase activity Catalysis of the reaction: methyl (2E,6E)-(10R,11S)-10,11-epoxy-3,7,11-trimethyltrideca-2,6-dienoate + H2O = (2E,6E)-(10R,11S)-10,11-epoxy-3,7,11-trimethyltrideca-2,6-dienoate + methanol. A carboxylesterase that hydrolyzes the ester linkage of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl juvenile hormone analog esterase activity|JH-esterase activity|JH esterase activity|juvenile hormone carboxyesterase activity|methyl-(2E,6E)-(10R,11S)-10,11-epoxy-3,7,11-trimethyltrideca-2,6-dienoate acylhydrolase activity MetaCyc:JUVENILE-HORMONE-ESTERASE-RXN|EC:3.1.1.59|RHEA:16393 molecular_function owl:Class GO:0071298 biolink:NamedThing cellular response to L-ascorbic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to L-ascorbate|cellular response to vitamin C|cellular response to ascorbic acid mah 2009-12-10T04:29:19Z biological_process owl:Class GO:0071326 biolink:NamedThing cellular response to monosaccharide stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:27:18Z biological_process owl:Class GO:0047793 biolink:NamedThing cycloeucalenol cycloisomerase activity Catalysis of the reaction: cycloeucalenol = obtusifoliol. tmpzr1t_l9r_go_relaxed.owl cycloeucalenol lyase (cyclopropane-decyclizing)|cycloeucalenol--obtusifoliol isomerase activity|cycloeucalenol-obtusifoliol isomerase activity RHEA:22800|EC:5.5.1.9|KEGG_REACTION:R03775|MetaCyc:CYCLOEUCALENOL-CYCLOISOMERASE-RXN molecular_function owl:Class GO:0016112 biolink:NamedThing polyterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of polyterpenoid compounds, terpenoids with more than eight isoprene units. tmpzr1t_l9r_go_relaxed.owl polyterpenoid biosynthesis|polyterpenoid anabolism|polyterpene biosynthesis|polyterpene biosynthetic process|polyterpenoid synthesis|polyterpenoid formation biological_process owl:Class GO:0016111 biolink:NamedThing polyterpenoid metabolic process The chemical reactions and pathways involving polyterpenoid compounds, terpenoids with more than eight isoprene units. tmpzr1t_l9r_go_relaxed.owl polyterpenoid metabolism|polyterpene metabolic process|polyterpene metabolism biological_process owl:Class GO:2000494 biolink:NamedThing positive regulation of interleukin-18-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of interleukin-18-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-18-mediated signalling pathway pr 2011-03-16T02:00:50Z biological_process owl:Class GO:0102632 biolink:NamedThing (S)-nandinine synthase activity Catalysis of the reaction: (S)-scoulerine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-nandinine + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21133 MetaCyc:RXN-15538|RHEA:50364|EC:1.14.19.73 molecular_function owl:Class GO:1902382 biolink:NamedThing 11-oxo-beta-amyrin catabolic process The chemical reactions and pathways resulting in the breakdown of 11-oxo-beta-amyrin. tmpzr1t_l9r_go_relaxed.owl 11-oxo-beta-amyrin degradation|11-oxo-beta-amyrin breakdown|11-oxo-beta-amyrin catabolism ms 2013-09-03T12:55:38Z biological_process owl:Class GO:0102807 biolink:NamedThing cyanidin 3-O-glucoside 2''-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cyanidin 3-O-beta-D-glucoside betaine <=> cyanidin 3-O-sophoroside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8176 molecular_function owl:Class GO:1902458 biolink:NamedThing positive regulation of stomatal opening Any process that activates or increases the frequency, rate or extent of stomatal opening. tmpzr1t_l9r_go_relaxed.owl upregulation of stomatal opening|activation of stomatal opening|up-regulation of stomatal opening|up regulation of stomatal opening tb 2013-10-16T22:25:33Z biological_process owl:Class GO:1902456 biolink:NamedThing regulation of stomatal opening Any process that modulates the frequency, rate or extent of stomatal opening. tmpzr1t_l9r_go_relaxed.owl tb 2013-10-16T22:25:06Z biological_process owl:Class GO:0070723 biolink:NamedThing response to cholesterol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholesterol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-15T02:28:27Z biological_process owl:Class GO:0106233 biolink:NamedThing glycosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a glycosome, a membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis. tmpzr1t_l9r_go_relaxed.owl glycosome biogenesis|glycosome organisation|glycosome organization and biogenesis hjd 2019-11-01T18:29:46Z biological_process owl:Class GO:0060329 biolink:NamedThing cytoplasmic actin-based contraction involved in rearward cell motility The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the rear of the cell. tmpzr1t_l9r_go_relaxed.owl cytoplasmic actin-based contraction involved in rearward cell locomotion biological_process owl:Class GO:0051393 biolink:NamedThing alpha-actinin binding Binding to alpha-actinin, one of a family of proteins that cross-link F-actin as antiparallel homodimers. Alpha-actinin has a molecular mass of 93-103 KDa; at the N-terminus there are two calponin homology domains, at the C-terminus there are two EF-hands. These two domains are connected by the rod domain. This domain is formed by triple-helical spectrin repeats. tmpzr1t_l9r_go_relaxed.owl alpha-actinin 4 binding|nonmuscle alpha-actinin binding|alpha-actinin 1 binding GO:0051372 molecular_function owl:Class GO:0042805 biolink:NamedThing actinin binding Binding to actinin, any member of a family of proteins that crosslink F-actin. tmpzr1t_l9r_go_relaxed.owl beta-actinin binding|capZ binding GO:0051406 molecular_function owl:Class GO:0033972 biolink:NamedThing proclavaminate amidinohydrolase activity Catalysis of the reaction: amidinoproclavaminate + H(2)O = proclavaminate + urea. tmpzr1t_l9r_go_relaxed.owl proclavaminate amidino hydrolase activity|PAH|proclavaminic acid amidino hydrolase activity RHEA:17001|KEGG_REACTION:R05357|MetaCyc:3.5.3.22-RXN|EC:3.5.3.22 molecular_function owl:Class GO:1905922 biolink:NamedThing negative regulation of acetylcholine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of acetylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of acetylcholine formation|downregulation of acetylcholine anabolism|down-regulation of acetylcholine synthesis|inhibition of acetylcholine anabolism|down regulation of acetylcholine biosynthetic process|negative regulation of acetylcholine biosynthesis|negative regulation of acetylcholine formation|downregulation of acetylcholine formation|downregulation of acetylcholine biosynthesis|down regulation of acetylcholine formation|down-regulation of acetylcholine biosynthetic process|inhibition of acetylcholine formation|down-regulation of acetylcholine anabolism|down regulation of acetylcholine anabolism|inhibition of acetylcholine biosynthetic process|negative regulation of acetylcholine anabolism|down regulation of acetylcholine biosynthesis|negative regulation of acetylcholine synthesis|downregulation of acetylcholine biosynthetic process|down regulation of acetylcholine synthesis|downregulation of acetylcholine synthesis|inhibition of acetylcholine biosynthesis|inhibition of acetylcholine synthesis|down-regulation of acetylcholine biosynthesis bc 2017-02-08T13:08:39Z biological_process owl:Class GO:0030144 biolink:NamedThing alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl,1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-(N-acetyl-beta-D-glucosaminyl-1,6)-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R. Only branched mannose glycopeptides with non-reducing N-acetylglucosamine terminal residues act as acceptors. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-alpha-mannoside beta1->6-acetylglucosaminyltransferase activity|GnTV activity|alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-alpha-mannoside beta-1->6-acetylglucosaminyltransferase activity|N-acetylglucosaminyltransferase V activity|UDP-N-acetylglucosamine:alpha-mannoside-beta1,6 N-acetylglucosaminyltransferase activity|alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|UDP-N-acetylglucosamine:alpha-mannoside-beta-1,6 N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:6-[2-(N-acetyl-beta-D-glucosaminyl)-alpha-D-mannosyl]-glycoprotein 6-beta-N-acetyl-D-glucosaminyltransferase activity Reactome:R-HSA-975916|Reactome:R-HSA-9696980|EC:2.4.1.155|RHEA:16921|MetaCyc:2.4.1.155-RXN molecular_function owl:Class GO:1903639 biolink:NamedThing regulation of gastrin-induced gastric acid secretion Any process that modulates the frequency, rate or extent of gastrin-induced gastric acid secretion. tmpzr1t_l9r_go_relaxed.owl sl 2014-11-20T20:54:20Z biological_process owl:Class GO:0032720 biolink:NamedThing negative regulation of tumor necrosis factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production. tmpzr1t_l9r_go_relaxed.owl negative regulation TNF-alpha production|down-regulation of tumor necrosis factor production|down regulation of tumor necrosis factor production|inhibition of tumor necrosis factor production|inhibition of cachectin production|negative regulation tumor necrosis factor-alpha production|negative regulation of tumor necrosis factor secretion|negative regulation of tumor necrosis factor biosynthetic process|downregulation of tumor necrosis factor production|negative regulation TNF production Note that this term refers only to the specific, original 'tumor necrosis factor' protein (TNF) and not other members of the tumor necrosis factor superfamily (those with the gene symbol root 'TNFSF'). sl 2015-07-09T19:50:08Z GO:0042536|GO:1904468 biological_process owl:Class GO:0044466 biolink:NamedThing glutaryl-CoA hydrolase activity Catalysis of the reaction: glutaryl-CoA + H2O = CoA + glutarate. tmpzr1t_l9r_go_relaxed.owl glutaryl-CoA thioesterase activity EC:3.1.2.3 jl 2012-01-17T04:16:43Z molecular_function owl:Class GO:0047617 biolink:NamedThing acyl-CoA hydrolase activity Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate. tmpzr1t_l9r_go_relaxed.owl acyl-CoA thiolesterase activity|acyl coenzyme A hydrolase activity|thioesterase B|acyl-CoA thioesterase II activity|acyl-CoA thioesterase I activity|acyl coenzyme A thioesterase activity|thioesterase II|acyl-CoA thioesterase activity Reactome:R-HSA-5690066|MetaCyc:ACYL-COA-HYDROLASE-RXN|Reactome:R-HSA-5690042|Reactome:R-HSA-5690043|RHEA:16781|EC:3.1.2.20 GO:0016292|GO:0016291|GO:0008778 molecular_function owl:Class GO:0033425 biolink:NamedThing CAU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CAU codon. tmpzr1t_l9r_go_relaxed.owl histidine tRNA|CAT codon-amino acid adaptor activity Note that in the standard genetic code, CAT codes for histidine. molecular_function owl:Class GO:0033821 biolink:NamedThing DNA beta-glucosyltransferase activity Catalysis of the transfer of a beta-D-glucosyl residue from UDP-glucose to a hydroxymethylcytosine residue in DNA. tmpzr1t_l9r_go_relaxed.owl T4-HMC-beta-glucosyl transferase activity|T4-beta-glucosyl transferase activity|uridine diphosphoglucose-deoxyribonucleate beta-glucosyltransferase activity|UDPglucose:DNA beta-D-glucosyltransferase activity|UDP glucose-DNA beta-glucosyltransferase activity|T4 phage beta-glucosyltransferase activity|UDP-glucose:DNA beta-D-glucosyltransferase activity MetaCyc:2.4.1.27-RXN|EC:2.4.1.27 molecular_function owl:Class GO:0050447 biolink:NamedThing zeatin 9-aminocarboxyethyltransferase activity Catalysis of the reaction: O-acetyl-L-serine + zeatin = L-lupinate + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl lupinic acid synthetase activity|lupinic acid synthase activity|beta-(9-cytokinin)-alanine synthase activity|O-acetyl-L-serine acetate-lyase (adding N(6)-substituted adenine) activity|O3-acetyl-L-serine:zeatin 2-amino-2-carboxyethyltransferase activity|beta-(9-cytokinin)alanine synthase activity|3-O-acetyl-L-serine:zeatin 2-amino-2-carboxyethyltransferase activity|O-acetyl-L-serine acetate-lyase (adding N6-substituted adenine)|lupinate synthetase activity EC:2.5.1.50|RHEA:17333|KEGG_REACTION:R03133|MetaCyc:BETA-9-CYTOKININ-ALANINE-SYNTHASE-RXN molecular_function owl:Class GO:0098046 biolink:NamedThing type V protein secretion system complex A complex of proteins that permits the translocation of proteins across the outer membrane via a transmembrane pore, formed by a beta-barrel, into the extracellular milieu or directly into host cells; the secreted proteins contain all the information required for translocation of an effector molecule through the cell envelope. The type V secretion systems includes the autotransporters (type Va), the two-partner secretion system (type Vb) and the Oca family (type Vc). tmpzr1t_l9r_go_relaxed.owl autotransporter system complex|T5SS complex Note that the type II protein secretion system complex does not include components of the Sec or Tat pathways. For components of these pathways, consider annotating to 'cell envelope Sec complex ; GO:0031522' or 'TAT protein translocation system complex ; GO:0033281'. bf 2012-08-01T10:05:49Z cellular_component owl:Class GO:2000865 biolink:NamedThing negative regulation of estradiol secretion Any process that stops, prevents or reduces the frequency, rate or extent of estradiol secretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of oestradiol secretion bf 2011-07-26T08:49:17Z biological_process owl:Class GO:0034724 biolink:NamedThing DNA replication-independent chromatin organization The formation or destruction of chromatin structures, occurring outside the context of DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication-independent nucleosome organisation https://github.com/geneontology/go-ontology/issues/22130 biological_process owl:Class GO:0030221 biolink:NamedThing basophil differentiation The process in which a relatively unspecialized myeloid precursor cell acquires specialized features of a basophil cell. tmpzr1t_l9r_go_relaxed.owl basophil cell differentiation biological_process owl:Class GO:0030851 biolink:NamedThing granulocyte differentiation The process in which a myeloid precursor cell acquires the specialized features of a granulocyte. Granulocytes are a class of leukocytes characterized by the presence of granules in their cytoplasm. These cells are active in allergic immune reactions such as arthritic inflammation and rashes. This class includes basophils, eosinophils and neutrophils. tmpzr1t_l9r_go_relaxed.owl granulocyte cell differentiation biological_process owl:Class GO:0099401 biolink:NamedThing caveola bulb The region of a caveola that extends into the cytoplasm, excluding the neck (rim). This region is associated with intracellular caveola proteins. tmpzr1t_l9r_go_relaxed.owl caveola crater cellular_component owl:Class GO:0110055 biolink:NamedThing negative regulation of actin filament annealing Any process that stops, prevents or reduces the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-20T20:10:55Z biological_process owl:Class GO:0110054 biolink:NamedThing regulation of actin filament annealing Any process that modulates the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-20T20:07:58Z biological_process owl:Class GO:1901875 biolink:NamedThing positive regulation of post-translational protein modification Any process that activates or increases the frequency, rate or extent of post-translational protein modification. tmpzr1t_l9r_go_relaxed.owl positive regulation of post-translational modification|activation of posttranslational modification|upregulation of post-translational protein modification|up-regulation of posttranslational modification|up-regulation of posttranslational amino acid modification|activation of post-translational protein modification|positive regulation of PTM|positive regulation of posttranslational modification|up-regulation of post-translational amino acid modification|activation of post-translational modification|up-regulation of post-translational modification|activation of PTM|positive regulation of post-translational amino acid modification|up-regulation of post-translational protein modification|activation of post-translational amino acid modification|up regulation of posttranslational protein modification|up-regulation of posttranslational protein modification|upregulation of PTM|up regulation of post-translational protein modification|activation of posttranslational protein modification|upregulation of posttranslational modification|up regulation of post-translational modification|positive regulation of posttranslational amino acid modification|up-regulation of PTM|upregulation of post-translational modification|positive regulation of posttranslational protein modification|up regulation of posttranslational modification|up regulation of PTM|up regulation of post-translational amino acid modification|up regulation of posttranslational amino acid modification|upregulation of post-translational amino acid modification|activation of posttranslational amino acid modification|upregulation of posttranslational protein modification|upregulation of posttranslational amino acid modification yaf 2013-02-05T10:03:02Z biological_process owl:Class GO:0004162 biolink:NamedThing dimethylnitrosamine demethylase activity Catalysis of the removal of a methyl group from N-nitrosodimethylamine. tmpzr1t_l9r_go_relaxed.owl N-nitrosodimethylamine demethylase activity molecular_function owl:Class GO:0060057 biolink:NamedThing apoptotic process involved in mammary gland involution Any apoptotic process that triggers the activity of proteolytic caspases whose actions dismantle the mammary epithelial cells resulting in their programmed cell death. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in mammary gland involution biological_process owl:Class GO:1903825 biolink:NamedThing organic acid transmembrane transport The process in which an organic acid is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-20T10:20:58Z biological_process owl:Class GO:0039677 biolink:NamedThing exit of virus from host cell nucleus via nuclear envelope disassembly The directed movement of the viral genome or a viral particle out of the host cell nucleus that involves disruption of the nuclear membrane envelope by the virus. tmpzr1t_l9r_go_relaxed.owl exit of virus from host cell nucleus via nuclear envelope breakdown VZ:2176 bf 2013-09-25T14:10:03Z biological_process owl:Class GO:1905682 biolink:NamedThing positive regulation of innate immunity memory response Any process that activates or increases the frequency, rate or extent of innate immunity memory response. tmpzr1t_l9r_go_relaxed.owl activation of innate immunity memory response|up regulation of innate immunity memory response|up-regulation of innate immunity memory response|upregulation of innate immunity memory response tb 2016-11-11T22:25:36Z biological_process owl:Class GO:0098865 biolink:NamedThing modification by symbiont of host bicellular tight junctions The process in which an organism effects a change in the structure or function of its host bicellular tight junctions, an occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098864 biolink:NamedThing modification by symbiont of host tight cell-cell junction The process in which a symbiont organism effects a change in the structure or function of its host tight junction, a cell-cell junction that seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032641 biolink:NamedThing lymphotoxin A production The chemical reactions and pathways resulting in the formation of the cytokine lymphotoxin A. tmpzr1t_l9r_go_relaxed.owl TNF-beta production|lymphotoxin A formation|TNF-B production|lymphotoxin-alpha production|lymphotoxin A biosynthetic process|lymphotoxin A synthesis|LTA production|tumor necrosis factor-beta production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0042109 biological_process owl:Class GO:0010212 biolink:NamedThing response to ionizing radiation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. tmpzr1t_l9r_go_relaxed.owl response to ionizing radiation stimulus|response to ionising radiation biological_process owl:Class GO:0097298 biolink:NamedThing regulation of nucleus size Any process that modulates the size of the nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of nuclear volume|regulation of nuclear size pr 2012-05-03T06:21:43Z biological_process owl:Class GO:0008048 biolink:NamedThing calcium sensitive guanylate cyclase activator activity Binds to and increases the activity of guanylate cyclase in response to a change in calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000333 biolink:NamedThing telomerase catalytic core complex The minimal catalytic core of telomerase is a ribonucleoprotein complex composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. tmpzr1t_l9r_go_relaxed.owl TERT-TERC complex cellular_component owl:Class GO:0097670 biolink:NamedThing SCF-Ufo1/Pof10 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Ufo1 in S. cerevisiae (Pof10 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:29:13Z cellular_component owl:Class GO:1901910 biolink:NamedThing adenosine 5'-(hexahydrogen pentaphosphate) metabolic process The chemical reactions and pathways involving adenosine 5'-(hexahydrogen pentaphosphate). tmpzr1t_l9r_go_relaxed.owl adenosine 5'-(hexahydrogen pentaphosphate) metabolism al 2013-02-13T14:17:59Z biological_process owl:Class GO:0010838 biolink:NamedThing positive regulation of keratinocyte proliferation Any process that increases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098920 biolink:NamedThing retrograde trans-synaptic signaling by lipid Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a lipid ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005865 biolink:NamedThing striated muscle thin filament Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021838 biolink:NamedThing motogenic signaling involved in interneuron migration from the subpallium to the cortex The creation and reception of signals that result in the directional movement of interneuron precursors from the subpallium to the cortex. tmpzr1t_l9r_go_relaxed.owl motogenic signalling involved in interneuron migration from the subpallium to the cortex biological_process owl:Class GO:0015946 biolink:NamedThing methanol oxidation The chemical reactions and pathways resulting in the conversion of methanol to methyl-Coenzyme M. tmpzr1t_l9r_go_relaxed.owl MetaCyc:CO2FORM-PWY biological_process owl:Class GO:0015945 biolink:NamedThing methanol metabolic process The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent. tmpzr1t_l9r_go_relaxed.owl methanol metabolism biological_process owl:Class GO:0042639 biolink:NamedThing telogen The resting phase of hair cycle. tmpzr1t_l9r_go_relaxed.owl hair resting phase Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0070026 biolink:NamedThing nitric oxide binding Binding to nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl nitrosyl binding|NO binding|nitrogen monoxide binding molecular_function owl:Class GO:1990959 biolink:NamedThing eosinophil homeostasis The process of regulating the proliferation and elimination of eosinophils such that the total number of eosinophils within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl eosinophilic leukocyte homeostasis|eosinophilic granulocyte homeostasis|eosinocyte homeostasis|eosinophilic leucocyte homeostasis sl 2016-06-06T22:34:31Z biological_process owl:Class GO:0015627 biolink:NamedThing type II protein secretion system complex A large protein complex, containing 12-15 subunits, that spans the cell envelope of Gram-negative bacteria and mediates the movement of proteins into the extracellular environment. The complex includes a component in the cytoplasm, an inner membrane subcomplex that reaches into the periplasmic compartment and a secretion pore in the outer membrane. Proteins using the Type II pathway are transported across the cytoplasmic membrane by the Sec or Tat complex. tmpzr1t_l9r_go_relaxed.owl MTB|T2SS-associated complexes|general secretion pathway-associated complex|Sec-dependent secretion system-associated complex|main terminal branch Note that the type II protein secretion system complex does not include components of the Sec or Tat pathways. For components of these pathways, consider annotating to 'cell envelope Sec complex ; GO:0031522' or 'TAT protein translocation system complex ; GO:0033281'. cellular_component owl:Class GO:0102715 biolink:NamedThing gibberellin A17,oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A17 + 2-oxoglutarate + O2 <=> gibberellin A28 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6546 molecular_function owl:Class GO:0015966 biolink:NamedThing diadenosine tetraphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine tetraphosphate biosynthesis|diadenosine tetraphosphate formation|diadenosine tetraphosphate anabolism|diadenosine tetraphosphate synthesis biological_process owl:Class GO:0018640 biolink:NamedThing dibenzothiophene monooxygenase activity Catalysis of the reaction: dibenzothiophene + NADH + H+ + O2 = dibenzothiophene-5-oxide + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:49076|UM-BBD_enzymeID:e0214|MetaCyc:RXN-621 molecular_function owl:Class GO:1990743 biolink:NamedThing protein sialylation A protein modification process that results in the addition of a sialic acid unit to the end of an oligosaccharide chain in a glycoprotein. tmpzr1t_l9r_go_relaxed.owl sl 2015-05-14T20:18:28Z biological_process owl:Class GO:0015531 biolink:NamedThing citrate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: citrate(out) + H+(out) = citrate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl citrate:hydrogen symporter activity RHEA:32123 molecular_function owl:Class GO:0070572 biolink:NamedThing positive regulation of neuron projection regeneration Any process that activates or increases the frequency, rate or extent of neuron projection regeneration, the regrowth of neuronal processes such as axons or dendrites following their loss or damage. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-15T01:45:27Z biological_process owl:Class GO:0018266 biolink:NamedThing GPI anchor biosynthetic process via N-aspartyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-aspartic acid ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a aspartyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor formation via N-aspartyl-glycosylphosphatidylinositolethanolamine|GPI anchor synthesis via N-aspartyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-aspartyl-glycosylphosphatidylinositolethanolamine RESID:AA0159 biological_process owl:Class GO:0018618 biolink:NamedThing anthranilate 1,2-dioxygenase (deaminating, decarboxylating) activity Catalysis of the reaction: anthranilate + NADPH + H+ + O2 = catechol + CO2 + NADP+ + NH3. tmpzr1t_l9r_go_relaxed.owl anthranilic acid hydroxylase activity|anthranilate dioxygenase reductase|anthranilate dioxygenase activity|anthranilic hydroxylase activity|anthranilate 1,2-dioxygenase|anthranilate hydroxylase activity|AntA|anthranilate,NAD(P)H:oxygen oxidoreductase (1,2-hydroxylating, deaminating, decarboxylating)|AntB|AntC UM-BBD_reactionID:r0577|EC:1.14.12.1|MetaCyc:1.14.12.1-RXN molecular_function owl:Class GO:0030298 biolink:NamedThing receptor signaling protein tyrosine kinase activator activity Binds to and increases the activity of a receptor signaling protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl receptor signalling protein tyrosine kinase activator activity molecular_function owl:Class GO:0031317 biolink:NamedThing tripartite ATP-independent periplasmic transporter complex A complex consisting of two membrane proteins and one extracytoplasmic solute receptor. Such transporters transport a variety of substrates without direct ATP power, instead using energy from ion gradients. tmpzr1t_l9r_go_relaxed.owl TRAP transporter complex|TRAP-T transporter complex cellular_component owl:Class GO:0031810 biolink:NamedThing H4 histamine receptor binding Binding to a H4 histamine receptor. tmpzr1t_l9r_go_relaxed.owl H4 histamine receptor ligand molecular_function owl:Class GO:1905440 biolink:NamedThing cellular response to chondroitin 6'-sulfate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chondroitin 6'-sulfate stimulus. tmpzr1t_l9r_go_relaxed.owl cvs 2016-09-14T18:56:19Z biological_process owl:Class GO:0047319 biolink:NamedThing aspartate-phenylpyruvate transaminase activity Catalysis of the reaction: keto-phenylpyruvate + L-aspartate = L-phenylalanine + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl aspartate-phenylpyruvate aminotransferase activity|aspartate--phenylpyruvate aminotransferase activity|L-aspartate:phenylpyruvate aminotransferase activity KEGG_REACTION:R00695|RHEA:14097|EC:2.6.1.70|MetaCyc:2.6.1.70-RXN molecular_function owl:Class GO:0030887 biolink:NamedThing positive regulation of myeloid dendritic cell activation Any process that stimulates, induces or increases the rate of myeloid dendritic cell activation. tmpzr1t_l9r_go_relaxed.owl stimulation of myeloid dendritic cell activation|up-regulation of myeloid dendritic cell activation|up regulation of myeloid dendritic cell activation|activation of myeloid dendritic cell activation|upregulation of myeloid dendritic cell activation biological_process owl:Class GO:0030885 biolink:NamedThing regulation of myeloid dendritic cell activation Any process that modulates the frequency or rate of myeloid dendritic cell activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047098 biolink:NamedThing Latia-luciferin monooxygenase (demethylating) activity Catalysis of the reaction: 2 O2 + donor-H2 + Latia luciferin = light + H2O + acceptor + formate + CO2 + oxidized Latia luciferin. tmpzr1t_l9r_go_relaxed.owl Latia luciferin monooxygenase (demethylating)|luciferase (Latia luciferin)|Latia-luciferin,hydrogen-donor:oxygen oxidoreductase (demethylating) RHEA:12677|MetaCyc:1.14.99.21-RXN|EC:1.14.99.21 molecular_function owl:Class GO:0033636 biolink:NamedThing modulation by symbiont of host response to temperature stimulus Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host response to thermal stimulus biological_process owl:Class GO:0031537 biolink:NamedThing regulation of anthocyanin metabolic process Any process that modulates the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. tmpzr1t_l9r_go_relaxed.owl regulation of anthocyanin metabolism biological_process owl:Class GO:0006728 biolink:NamedThing pteridine biosynthetic process The chemical reactions and pathways resulting in the formation of pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group. tmpzr1t_l9r_go_relaxed.owl pterin biosynthesis|pterin biosynthetic process|pteridine formation|pteridine anabolism|pteridine biosynthesis|pteridine synthesis biological_process owl:Class GO:0043004 biolink:NamedThing cytoplasmic sequestering of CFTR protein The selective interaction of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein with specific molecules in the cytoplasm, thereby inhibiting its transport to the cell membrane. tmpzr1t_l9r_go_relaxed.owl retention of CFTR (cystic fibrosis transmembrane conductance regulator) protein in cytoplasm|sequestration of CFTR (cystic fibrosis transmembrane conductance regulator protein) in cytoplasm|sequestering of CFTR (cystic fibrosis transmembrane conductance regulator protein) in cytoplasm|cytoplasmic sequestration of CFTR (cystic fibrosis transmembrane conductance regulator protein)|cytoplasmic retention of CFTR (cystic fibrosis transmembrane conductance regulator) protein|storage of CFTR (cystic fibrosis transmembrane conductance regulator) protein in cytoplasm|maintenance of CFTR protein location in cytoplasm|cytoplasmic storage of CFTR (cystic fibrosis transmembrane conductance regulator) protein|cytoplasmic sequestering of cystic fibrosis transmembrane conductance regulator protein biological_process owl:Class GO:0051220 biolink:NamedThing cytoplasmic sequestering of protein The selective interaction of a protein with specific molecules in the cytoplasm, thereby inhibiting its transport into other areas of the cell. tmpzr1t_l9r_go_relaxed.owl retention of protein in cytoplasm|cytoplasmic sequestration of protein|sequestering of protein in cytoplasm|sequestration of protein in cytoplasm|cytoplasmic storage of protein|cytoplasmic retention of protein|storage of protein in cytoplasm|maintenance of protein location in cytoplasm biological_process owl:Class GO:1904853 biolink:NamedThing protein localization to ascospore wall A process in which a protein is transported to, or maintained in, a location within an ascospore wall. tmpzr1t_l9r_go_relaxed.owl protein localisation to ascospore wall|protein localization in ascospore wall|protein localisation in ascospore wall mah 2015-12-14T12:52:50Z biological_process owl:Class GO:0030706 biolink:NamedThing germarium-derived oocyte differentiation The process in which one relatively unspecialized immature cystocyte of the germ-line cyst in the germarium acquires the specialized features of an oocyte. An example of this process can be found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl oocyte cell differentiation biological_process owl:Class GO:0035454 biolink:NamedThing extrinsic component of stromal side of plastid inner membrane The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to stromal leaflet of plastid inner membrane|extrinsic to stromal side of plastid inner membrane|peripheral to stromal side of plastid inner membrane bf 2010-04-16T10:23:12Z cellular_component owl:Class GO:0018908 biolink:NamedThing organosulfide cycle A cyclic series of interconversions involving dimethyl sulfide, methanethiol and hydrogen sulfide. Dimethylsulfoxide can also be converted to dimethyl sulfide, which enters the cycle. tmpzr1t_l9r_go_relaxed.owl organosulphide cycle UM-BBD_pathwayID:sulf biological_process owl:Class GO:0007132 biolink:NamedThing meiotic metaphase I The cell cycle phase, following prophase I, during which chromosomes become aligned on the equatorial plate of the cell as part of meiosis I. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0071408 biolink:NamedThing cellular response to cycloalkane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloalkane stimulus. A cycloalkane is a cyclic saturated hydrocarbon having the general formula CnH2n. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T02:57:15Z biological_process owl:Class GO:0106240 biolink:NamedThing labd-13Z-ene-9,15,16-triol synthase activity Catalysis of the reaction:O2 + peregrinol + reduced [NADPH--hemoprotein reductase] = H(+) + H2O + labd-13Z-ene-9,15,16-triol + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:62192 hjd 2019-12-19T17:43:00Z molecular_function owl:Class GO:0038203 biolink:NamedThing TORC2 signaling A series of intracellular molecular signals mediated by TORC2; TOR (rapamycin-insensitive companion of TOR) in complex with at least Rictor (regulatory-associated protein of TOR), or orthologs of, and other signaling components. tmpzr1t_l9r_go_relaxed.owl TORC2 signal transduction bf 2013-12-09T14:43:29Z biological_process owl:Class GO:1990393 biolink:NamedThing 3M complex A protein complex, at least composed of CUL7, CCDC8 and OBSL1, that is required for maintaining microtubule and genome integrity. tmpzr1t_l9r_go_relaxed.owl sp 2014-06-05T06:40:49Z cellular_component owl:Class GO:0033775 biolink:NamedThing deoxysarpagine hydroxylase activity Catalysis of the reaction: 10-deoxysarpagine + H(+) + NADPH + O(2) = H(2)O + NADP(+) + sarpagine. tmpzr1t_l9r_go_relaxed.owl DOSH|10-deoxysarpagine,NADPH:oxygen oxidoreductase (10-hydroxylating) activity KEGG_REACTION:R05828|EC:1.14.14.136|MetaCyc:1.14.13.91-RXN|RHEA:14237 molecular_function owl:Class GO:0097269 biolink:NamedThing all-trans-decaprenyl-diphosphate synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-decaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl (2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase activity|2-trans,6-trans-farnesyl diphosphate activity RHEA:27802|EC:2.5.1.91|Reactome:R-HSA-2162253 pr 2012-03-20T01:00:23Z molecular_function owl:Class GO:0102866 biolink:NamedThing di-homo-gamma-linolenate delta5 desaturase activity Catalysis of the reaction: all-cis-icosa-8,11,14-trienoate + O2 + a reduced electron acceptor <=> arachidonate + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:46260|MetaCyc:RXN-8346 molecular_function owl:Class GO:0051549 biolink:NamedThing positive regulation of keratinocyte migration Any process that activates or increases the frequency, rate or extent of keratinocyte migration. tmpzr1t_l9r_go_relaxed.owl activation of keratinocyte migration|up-regulation of keratinocyte migration|up regulation of keratinocyte migration|upregulation of keratinocyte migration|stimulation of keratinocyte migration biological_process owl:Class GO:0000483 biolink:NamedThing endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the nuclei of D. melanogaster as well as in those of other dipteran species. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090601 biolink:NamedThing enucleation The process in which nucleated precursor cells lose their nucleus. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-05T16:25:16Z biological_process owl:Class GO:0061322 biolink:NamedThing disseminated nephrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a disseminated nephrocyte. A disseminated nephrocyte is an insect renal cell that filters hemolymph and is found at scattered locations in the fat body or other tissues. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-24T12:30:46Z biological_process owl:Class GO:0061319 biolink:NamedThing nephrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a nephrocyte. A nephrocyte is an insect renal cell that filters hemolymph. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-24T12:23:29Z biological_process owl:Class GO:1900594 biolink:NamedThing (+)-kotanin metabolic process The chemical reactions and pathways involving (+)-kotanin. tmpzr1t_l9r_go_relaxed.owl (+)-kotanin metabolism di 2012-05-15T06:54:19Z biological_process owl:Class GO:0050822 biolink:NamedThing peptide stabilization Any process involved in maintaining the structure and integrity of a peptide and preventing it from being degraded. tmpzr1t_l9r_go_relaxed.owl peptide stabilisation|peptide stabilization activity biological_process owl:Class GO:0031529 biolink:NamedThing ruffle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell. tmpzr1t_l9r_go_relaxed.owl ruffle organisation|ruffle organization and biogenesis biological_process owl:Class GO:0071497 biolink:NamedThing cellular response to freezing Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius. tmpzr1t_l9r_go_relaxed.owl ice nucleation inhibitor activity|antifreeze activity mah 2009-12-18T02:41:02Z biological_process owl:Class GO:0050826 biolink:NamedThing response to freezing Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius. tmpzr1t_l9r_go_relaxed.owl ice nucleation inhibitor activity|antifreeze activity biological_process owl:Class GO:0071346 biolink:NamedThing cellular response to interferon-gamma Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon gamma is the only member of the type II interferon found so far. tmpzr1t_l9r_go_relaxed.owl cellular response to type II interferon|cellular response to gamma-interferon|cellular response to type II IFN|cellular response to immune interferon mah 2009-12-11T02:48:00Z biological_process owl:Class GO:0019129 biolink:NamedThing peptidyl-leucine racemization The racemization of peptidyl-leucine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0197 GO:0018093|GO:0018375 biological_process owl:Class GO:0051026 biolink:NamedThing chiasma assembly The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047773 biolink:NamedThing carnitinamidase activity Catalysis of the reaction: (R)-carnitinamide + H(2)O = (R)-carnitine + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-carnitine amidase activity|L-carnitinamidase activity|L-carnitinamide amidohydrolase activity|carnitine amidase activity MetaCyc:CARNITINAMIDASE-RXN|EC:3.5.1.73|RHEA:17537|KEGG_REACTION:R01922 molecular_function owl:Class GO:0008760 biolink:NamedThing UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity Catalysis of the reaction: phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl pyruvate-uridine diphospho-N-acetylglucosamine transferase activity|phosphoenolpyruvate:UDP-2-acetamido-2-deoxy-D-glucose 2-enoyl-1-carboxyethyltransferase activity|pyruvic-uridine diphospho-N-acetylglucosaminyltransferase activity|phosphoenolpyruvate-UDP-acetylglucosamine-3-enolpyruvyltransferase activity|MurA transferase activity|enoylpyruvate transferase activity|pyruvate-uridine diphospho-N-acetyl-glucosamine transferase activity|UDP-N-acetylglucosamine 1-carboxyvinyl-transferase activity|UDP-N-acetylglucosamine enoylpyruvyltransferase activity|phosphoenolpyruvate:uridine-5'-diphospho-N-acetyl-2-amino-2-deoxyglucose 3-enolpyruvyltransferase activity|phosphopyruvate-uridine diphosphoacetylglucosamine pyruvatetransferase activity|phosphoenolpyruvate:UDP-N-acetyl-D-glucosamine 1-carboxyvinyltransferase activity|phosphoenolpyruvate:uridine diphosphate N-acetylglucosamine enolpyruvyltransferase activity|pyruvate-UDP-acetylglucosamine transferase activity EC:2.5.1.7|RHEA:18681|KEGG_REACTION:R00660|MetaCyc:UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN molecular_function owl:Class GO:0046298 biolink:NamedThing 2,4-dichlorobenzoate catabolic process The chemical reactions and pathways resulting in the breakdown of 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs). tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorobenzoate breakdown|2,4-dichlorobenzoate catabolism|2,4-dichlorobenzoate degradation biological_process owl:Class GO:0046047 biolink:NamedThing TTP catabolic process The chemical reactions and pathways resulting in the breakdown of TTP, ribosylthymine triphosphate. tmpzr1t_l9r_go_relaxed.owl TTP breakdown|TTP degradation|TTP catabolism|TTP hydrolysis biological_process owl:Class GO:0047530 biolink:NamedThing 2,4-diaminopentanoate dehydrogenase activity Catalysis of the reaction: 2,4-diaminopentanoate + H2O + NAD(P)+ = 2-amino-4-oxopentanoate + NH3 + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 2,4-diaminopentanoic acid C4 dehydrogenase activity|2,4-diaminopentanoate:NAD(P)+ oxidoreductase (deaminating) EC:1.4.1.12|MetaCyc:24-DIAMINOPENTANOATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0010398 biolink:NamedThing xylogalacturonan metabolic process The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues. tmpzr1t_l9r_go_relaxed.owl xylogalacturonan metabolism biological_process owl:Class GO:0047308 biolink:NamedThing alanine-oxomalonate transaminase activity Catalysis of the reaction: L-alanine + oxomalonate = aminomalonate + pyruvate. tmpzr1t_l9r_go_relaxed.owl alanine--oxomalonate aminotransferase activity|L-alanine:oxomalonate aminotransferase activity|alanine-ketomalonate (mesoxalate) transaminase activity|L-alanine-ketomalonate transaminase activity|alanine-oxomalonate aminotransferase activity RHEA:18809|KEGG_REACTION:R02970|EC:2.6.1.47|MetaCyc:2.6.1.47-RXN molecular_function owl:Class GO:0006477 biolink:NamedThing protein sulfation The addition of a sulfate group as an ester to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid sulphation|protein amino acid sulfation biological_process owl:Class GO:0032812 biolink:NamedThing positive regulation of epinephrine secretion Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine. tmpzr1t_l9r_go_relaxed.owl stimulation of epinephrine secretion|upregulation of epinephrine secretion|activation of epinephrine secretion|up-regulation of epinephrine secretion|up regulation of epinephrine secretion|positive regulation of adrenaline secretion biological_process owl:Class GO:0047982 biolink:NamedThing homocysteine desulfhydrase activity Catalysis of the reaction: L-homocysteine + H2O = sulfide + NH3 + 2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl L-homocysteine hydrogen-sulfide-lyase (deaminating; 2-oxobutanoate-forming)|homocysteine desulfurase activity|L-homocysteine hydrogen-sulfide-lyase (deaminating) EC:4.4.1.2|Reactome:R-HSA-1614631|MetaCyc:HOMOCYSTEINE-DESULFHYDRASE-RXN|RHEA:14501 molecular_function owl:Class GO:0047095 biolink:NamedThing 2-hydroxycyclohexanone 2-monooxygenase activity Catalysis of the reaction: 2-hydroxycyclohexan-1-one + NADPH + O(2) = 6-oxohexanoate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 2-hydroxycyclohexan-1-one,NADPH:oxygen 2-oxidoreductase (1,2-lactonizing) RHEA:33283|MetaCyc:1.14.13.66-RXN|EC:1.14.13.66|KEGG_REACTION:R03281 molecular_function owl:Class GO:0048630 biolink:NamedThing skeletal muscle tissue growth The increase in size or mass of a skeletal muscle. This may be due to a change in the fiber number or size. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900535 biolink:NamedThing palmitic acid biosynthetic process The chemical reactions and pathways resulting in the formation of palmitic acid. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-09T07:05:17Z biological_process owl:Class GO:0061159 biolink:NamedThing establishment of bipolar cell polarity involved in cell morphogenesis The specification and formation of bipolar intracellular organization or cell growth patterns that contribute to cell morphogenesis. Bipolar organization is the organization that is a mirror image along an axis from a plane. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-23T09:14:39Z biological_process owl:Class GO:0090701 biolink:NamedThing specification of plant organ identity The regionalization process in which the identity of a plant organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-29T15:09:18Z biological_process owl:Class GO:0035759 biolink:NamedThing mesangial cell-matrix adhesion The binding of a mesangial cell to the extracellular matrix via adhesion molecules. A mesangial cell is a cell that encapsulates the capillaries and venules in the kidney. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-25T02:06:21Z biological_process owl:Class GO:0046665 biolink:NamedThing amnioserosa maintenance Maintenance of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904657 biolink:NamedThing negative regulation of sensory perception of sweet taste Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of sweet taste. tmpzr1t_l9r_go_relaxed.owl inhibition of sensory perception of sweet taste|negative regulation of sweet taste perception|downregulation of sweet taste perception|down regulation of sensory perception of sweet taste|down regulation of sweet taste perception|down-regulation of sweet taste perception|down-regulation of sensory perception of sweet taste|downregulation of sensory perception of sweet taste|inhibition of sweet taste perception mr 2015-09-04T16:43:18Z biological_process owl:Class GO:0048307 biolink:NamedThing ferredoxin-nitrite reductase activity Catalysis of the reaction: NH3 + 2 H2O + 6 oxidized ferredoxin = nitrite + 6 reduced ferredoxin + 7 H+. tmpzr1t_l9r_go_relaxed.owl ammonia:ferredoxin oxidoreductase activity RHEA:18041|MetaCyc:FERREDOXIN--NITRITE-REDUCTASE-RXN|EC:1.7.7.1 molecular_function owl:Class GO:0018469 biolink:NamedThing myrtenal dehydrogenase activity Catalysis of the reaction: myrtenal + H2O = 2 H+ + 2 e- + myrtenic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0711 molecular_function owl:Class GO:0099081 biolink:NamedThing supramolecular polymer A polymeric supramolecular structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071861 biolink:NamedThing tachykinin receptor binding Binding to a tachykinin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:24:34Z molecular_function owl:Class GO:1904465 biolink:NamedThing negative regulation of matrix metallopeptidase secretion Any process that stops, prevents or reduces the frequency, rate or extent of matrix metallopeptidase secretion. tmpzr1t_l9r_go_relaxed.owl down regulation of MMP secretion|inhibition of matrix metallopeptidase secretion|down-regulation of matrix metalloproteinase secretion|down regulation of matrix metalloproteinase secretion|downregulation of MMP secretion|inhibition of matrix metalloproteinase secretion|down-regulation of matrix metallopeptidase secretion|down regulation of matrix metallopeptidase secretion|down-regulation of MMP secretion|negative regulation of matrix metalloproteinase secretion|negative regulation of MMP secretion|downregulation of matrix metallopeptidase secretion|downregulation of matrix metalloproteinase secretion|inhibition of MMP secretion sl 2015-07-09T19:46:24Z biological_process owl:Class GO:0070564 biolink:NamedThing positive regulation of vitamin D receptor signaling pathway Any process that activates or increases the frequency, rate or extent of vitamin D receptor signaling pathway activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of vitamin D receptor signaling pathway|up regulation of vitamin D receptor signaling pathway|activation of vitamin D receptor signaling pathway|upregulation of vitamin D receptor signaling pathway|positive regulation of vitamin D receptor signalling pathway|positive regulation of VDR signaling pathway|stimulation of vitamin D receptor signaling pathway mah 2009-04-14T02:02:54Z biological_process owl:Class GO:0097303 biolink:NamedThing lipoprotein biosynthetic process via N-acyl transfer The chemical reactions and pathways by which N-acyl transfer leads to formation of a water-soluble protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl lipoprotein biosynthesis (N-acyl transfer) pr 2012-05-15T01:03:59Z biological_process owl:Class GO:0036380 biolink:NamedThing UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-glucosamine + ditrans,octacis-undecaprenyl phosphate = UMP + N-acetyl-alpha-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine:undecaprenyl-phosphate GlcNAc-1-phosphate transferase activity|UDP-N-acetyl-D-glucosamine:ditrans,octacis-undecaprenyl phosphate N-acetyl-D-glucosaminephosphotransferase activity|UDP-GIcNAc:undecaprenyl phosphate N-acetylglucosaminyl 1-P transferase activity|UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase activity|GlcNAc-P-P-Und synthase activity MetaCyc:GLCNACPTRANS-RXN|KEGG_REACTION:R08856|EC:2.7.8.33|RHEA:28090 bf 2013-05-23T10:51:26Z molecular_function owl:Class GO:1904123 biolink:NamedThing positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway A serotonin receptor signaling pathway that results in positive regulation of fatty acid beta-oxidation. tmpzr1t_l9r_go_relaxed.owl activation of fatty acid beta-oxidation by serotonin receptor signaling pathway|up-regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway|stimulation of fatty acid beta-oxidation by serotonin receptor signaling pathway|upregulation of fatty acid beta-oxidation by serotonin receptor signaling pathway|up regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway kmv 2015-04-08T21:03:20Z biological_process owl:Class GO:0097310 biolink:NamedThing cap2 mRNA methylation Methylation of the ribose of the first and second nucleotides of a 5'-capped mRNA. tmpzr1t_l9r_go_relaxed.owl cap2 mRNA capping pr 2012-05-23T04:05:07Z biological_process owl:Class GO:0031782 biolink:NamedThing type 4 melanocortin receptor binding Binding to a type 4 melanocortin receptor. tmpzr1t_l9r_go_relaxed.owl type 4 melanocortin receptor ligand molecular_function owl:Class GO:0001784 biolink:NamedThing phosphotyrosine residue binding Binding to a phosphorylated tyrosine residue within a protein. tmpzr1t_l9r_go_relaxed.owl phosphotyrosine binding molecular_function owl:Class GO:0003201 biolink:NamedThing epithelial to mesenchymal transition involved in coronary vasculature morphogenesis A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the shaping of the coronary vasculature. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:36:54Z biological_process owl:Class GO:0051030 biolink:NamedThing snRNA transport The directed movement of snRNA, small nuclear ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033755 biolink:NamedThing sulfur oxygenase/reductase activity Catalysis of the reaction: 4 sulfur + 4 H2O + O2 = 2 hydrogen sulfide + 2 bisulfite + 2 H+. tmpzr1t_l9r_go_relaxed.owl sulfur:oxygen oxidoreductase (hydrogen-sulfide- and sulfite-forming) activity|SOR|sulfur oxygenase activity|sulphur oxygenase/reductase activity MetaCyc:1.13.11.55-RXN|EC:1.13.11.55|RHEA:13957 molecular_function owl:Class GO:0070907 biolink:NamedThing histidine:histamine antiporter activity Catalysis of the reaction: histidine(out) + histamine(in) = histidine(in) + histamine(out). tmpzr1t_l9r_go_relaxed.owl histidine/histamine antiporter activity|histidine-histamine antiporter activity mah 2009-09-04T03:47:07Z molecular_function owl:Class GO:0035615 biolink:NamedThing clathrin adaptor activity Bringing together a cargo protein with clathrin, responsible for the formation of endocytic vesicles. tmpzr1t_l9r_go_relaxed.owl clathrin-associated adaptor activity bf 2010-12-01T11:17:57Z molecular_function owl:Class GO:0140312 biolink:NamedThing cargo adaptor activity Binding directly to the structural scaffolding elements of a vesicle coat (such as clathrin or COPII), and bridging the membrane, cargo receptor, and membrane deformation machinery. tmpzr1t_l9r_go_relaxed.owl endocytic adaptor activity https://github.com/geneontology/go-ontology/issues/19454|https://github.com/geneontology/go-ontology/issues/17553 pg 2019-03-26T17:01:45Z GO:0098748 molecular_function owl:Class GO:0034949 biolink:NamedThing 1,1-dichloroethane reductive dehalogenase activity Catalysis of the reaction: 1,1-dichloroethane + 2 H+ + 2 e- = chloroethane + HCl. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1008|EC:1.97.1.- molecular_function owl:Class GO:0071878 biolink:NamedThing negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor protein signaling pathway activity. An adrenergic receptor signaling pathway is the series of molecular signals generated as a consequence of an adrenergic receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl negative regulation of adrenergic receptor signalling pathway|negative regulation of adrenergic receptor signaling pathway mah 2010-09-13T04:15:34Z biological_process owl:Class GO:0043876 biolink:NamedThing D-threonine aldolase activity Catalysis of the reaction: D-threonine (or D-allo-threonine) = glycine + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl low-specificity D-threonine aldolase|D-allo-threonine aldolase activity|D-TA|D-allo-TA|DtaAS EC:4.1.2.42|RHEA:15257|MetaCyc:4.1.2.42-RXN molecular_function owl:Class GO:0097267 biolink:NamedThing omega-hydroxylase P450 pathway The chemical reactions and pathways by which arachidonic acid is converted to other compounds initially by omega-hydroxylation. tmpzr1t_l9r_go_relaxed.owl P450 omega-hydroxylase pathway pr 2012-03-15T12:58:15Z biological_process owl:Class GO:0001587 biolink:NamedThing Gq/11-coupled serotonin receptor activity Combining with serotonin and transmitting the signal across the membrane by activation of the Gq/11 subunit of an associated cytoplasmic heterotrimeric G protein complex. The Gq/11 subunit subsequently activates phospholipase C and results in an increase in inositol triphosphate (IP3) levels. tmpzr1t_l9r_go_relaxed.owl 5-HT2 receptor activity|serotonin receptor activity, coupled via Gq/11 molecular_function owl:Class GO:0072226 biolink:NamedThing metanephric long descending thin limb bend development The process whose specific outcome is the progression of the metanephric long descending thin limb bend over time, from its formation to the mature structure. The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:37:16Z biological_process owl:Class GO:0072005 biolink:NamedThing maintenance of kidney identity The process in which the identity of a kidney is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl maintenance of kidney anlage identity mah 2010-01-25T11:57:41Z biological_process owl:Class GO:0016615 biolink:NamedThing malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990551 biolink:NamedThing mitochondrial 2-oxoadipate transmembrane transport The process in which 2-oxoadipate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:25:48Z biological_process owl:Class GO:0098747 biolink:NamedThing slow, calcium ion-dependent exocytosis of neurotransmitter The slow, second phase of calcium ion-induced neurotransmitter release, via exocytosis, into the synaptic cleft. This depends on high affinity calcium sensors and decays slowly, typically with a decay constant of over 100ms. The underlying molecular mechanisms of this process are distinct from those of the earlier, fast phase of release. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070434 biolink:NamedThing positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 2 (NOD2) pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of nucleotide-binding oligomerization domain containing 2 signalling pathway|positive regulation of NOD2 signaling pathway biological_process owl:Class GO:0018990 biolink:NamedThing ecdysis, chitin-based cuticle The shedding of the old chitin-based cuticlar fragments during the molting cycle. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150069 biolink:NamedThing negative regulation of tubulin deacetylase activity Any process that stops, prevents or reduces the frequency, rate or extent of tubulin deacetylase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-24T10:40:19Z biological_process owl:Class GO:0047497 biolink:NamedThing mitochondrion transport along microtubule The directed movement of a mitochondrion along a microtubule, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl mitochondrial migration along microtubule|mitochondrial transport along microtubule biological_process owl:Class GO:1990433 biolink:NamedThing CSL-Notch-Mastermind transcription factor complex A DNA-binding transcription factor complex consisting of CSL and mastermind proteins in complex with the cleaved, intracellular domain of Notch. It is required for both repression and activation of Notch target genes. tmpzr1t_l9r_go_relaxed.owl CSL-NotchIC-MASTERMIND complex bhm 2014-07-30T14:41:43Z cellular_component owl:Class GO:0008941 biolink:NamedThing nitric oxide dioxygenase activity Catalysis of the reaction: 2 NO + 2 O2 + NADPH + H+ = 2 nitrate + NADP+. tmpzr1t_l9r_go_relaxed.owl nitric oxide,NAD(P)H:oxygen oxidoreductase activity|NOD activity MetaCyc:R621-RXN|Reactome:R-HSA-5340226|Reactome:R-HSA-1222723|EC:1.14.12.17 molecular_function owl:Class GO:1904543 biolink:NamedThing negative regulation of free ubiquitin chain polymerization Any process that stops, prevents or reduces the frequency, rate or extent of free ubiquitin chain polymerization. tmpzr1t_l9r_go_relaxed.owl down-regulation of free ubiquitin chain polymerization|downregulation of free ubiquitin chain polymerization|inhibition of free ubiquitin chain polymerization|down regulation of free ubiquitin chain polymerization An example of this is PARK2 in human (UniProt symbol O60260) in PMID:24660806 (inferred from mutant phenotype). pad 2015-08-11T11:45:00Z biological_process owl:Class GO:1903349 biolink:NamedThing omegasome membrane Any membrane that is part of an omegasome. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-19T12:33:09Z cellular_component owl:Class GO:0061733 biolink:NamedThing peptide-lysine-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + lysine in peptide = CoA + N-acetyl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6811508|Reactome:R-HSA-8951966|Reactome:R-HSA-9626945|Reactome:R-HSA-9617758|Reactome:R-HSA-9620515 dph 2015-09-10T10:22:19Z molecular_function owl:Class GO:0003785 biolink:NamedThing actin monomer binding Binding to monomeric actin, also known as G-actin. tmpzr1t_l9r_go_relaxed.owl G actin binding molecular_function owl:Class GO:0062077 biolink:NamedThing phenylacetyl-CoA 1,2-epoxidase complex A protein complex capable of catalysing the reaction: phenylacetyl-CoA + H(+) + NADPH + O2 = 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA + H2O + NADP(+). tmpzr1t_l9r_go_relaxed.owl paaABCE complex dph 2018-09-27T12:40:04Z cellular_component owl:Class GO:0071476 biolink:NamedThing cellular hypotonic response Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell. tmpzr1t_l9r_go_relaxed.owl cellular hypo-osmotic response mah 2009-12-18T11:52:59Z biological_process owl:Class GO:0042935 biolink:NamedThing achromobactin transport The directed movement of achromobactin, a citrate siderophore, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032423 biolink:NamedThing regulation of mismatch repair Any process that modulates the frequency, rate or extent of mismatch repair. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046638 biolink:NamedThing positive regulation of alpha-beta T cell differentiation Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of alpha-beta T cell differentiation|positive regulation of alpha-beta T cell development|up regulation of alpha-beta T cell differentiation|positive regulation of alpha-beta T lymphocyte differentiation|up-regulation of alpha-beta T cell differentiation|positive regulation of alpha-beta T-lymphocyte differentiation|activation of alpha-beta T cell differentiation|positive regulation of alpha-beta T-cell differentiation|stimulation of alpha-beta T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002400 biolink:NamedThing tolerance induction in nasopharyngeal-associated lymphoid tissue Tolerance induction taking place in the nasopharyngeal-associated lymphoid tissue (NALT). tmpzr1t_l9r_go_relaxed.owl nasal tolerance|tolerance induction in NALT biological_process owl:Class GO:0018272 biolink:NamedThing protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine The modification of peptidyl-lysine to form N6-pyridoxal phosphate-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0119 biological_process owl:Class GO:0033816 biolink:NamedThing diaminobutyrate acetyltransferase activity Catalysis of the reaction: L-2,4-diaminobutyrate + acetyl-CoA = N(4)-acetyl-L-2,4-diaminobutyrate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 2,4-diaminobutanoate acetyltransferase activity|DABAcT|acetyl-CoA:L-2,4-diaminobutanoate 4-N-acetyltransferase activity|diaminobutyric acid acetyltransferase activity|acetyl-CoA:L-2,4-diaminobutanoate N4-acetyltransferase activity|L-2,4-diaminobutyrate acetyltransferase activity|DABA acetyltransferase activity|L-2,4-diaminobutanoate acetyltransferase activity|DAB acetyltransferase activity|EctA KEGG_REACTION:R06978|RHEA:16901|MetaCyc:R102-RXN|EC:2.3.1.178 molecular_function owl:Class GO:1902877 biolink:NamedThing positive regulation of embryonic pattern specification Any process that activates or increases the frequency, rate or extent of embryonic pattern specification. tmpzr1t_l9r_go_relaxed.owl upregulation of embryonic pattern specification|positive regulation of ventral/lateral system|activation of ventral/lateral system|activation of embryonic pattern specification|up regulation of embryonic pattern specification|up-regulation of ventral/lateral system|up regulation of ventral/lateral system|upregulation of ventral/lateral system|up-regulation of embryonic pattern specification mr 2014-04-03T15:25:26Z biological_process owl:Class GO:0018862 biolink:NamedThing phenylphosphate carboxylase activity Catalysis of the reaction: phenylphosphate + CO2 + H2O = H+ + phosphate + 4-hydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PHENYLPCARB-RXN|EC:6.4.1.-|UM-BBD_reactionID:r0157 molecular_function owl:Class GO:0098619 biolink:NamedThing selenocysteine-tRNA ligase activity Catalysis of the reaction: tRNASec + L-Ser + ATP = Ser-tRNASec + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408526 molecular_function owl:Class GO:1903807 biolink:NamedThing L-threonine import across plasma membrane The directed movement of L-threonine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-threonine uptake|L-threonine import into cell|L-threonine import bf 2012-05-11T10:46:21Z GO:0036231 biological_process owl:Class GO:0048408 biolink:NamedThing epidermal growth factor binding Binding to epidermal growth factor. tmpzr1t_l9r_go_relaxed.owl EGF binding molecular_function owl:Class GO:0033953 biolink:NamedThing alpha-agarase activity Catalysis of the endohydrolysis of 1,3-alpha-L-galactosidic linkages in agarose, yielding agarotetraose as the major product. tmpzr1t_l9r_go_relaxed.owl agarose 3-glycanohydrolase activity|agarase A33 activity|agarase activity MetaCyc:3.2.1.158-RXN|EC:3.2.1.158 molecular_function owl:Class GO:0038017 biolink:NamedThing Wnt receptor internalization A receptor-mediated endocytosis process that results in the movement of a Wnt receptor from the plasma membrane to the inside of the cell. tmpzr1t_l9r_go_relaxed.owl Wnt receptor endocytosis bf 2011-06-23T04:25:47Z biological_process owl:Class GO:0015411 biolink:NamedThing ABC-type taurine transporter transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + taurine(out) = ADP + phosphate + taurine(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled taurine transporter activity|taurine-transporting ATPase activity|taurine ABC transporter|ATP-dependent taurine transporter activity https://github.com/geneontology/go-ontology/issues/21640 EC:7.6.2.7|MetaCyc:ABC-64-RXN|RHEA:14613|MetaCyc:3.6.3.36-RXN molecular_function owl:Class GO:0030505 biolink:NamedThing inorganic diphosphate transport The directed movement of inorganic diphosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl inorganic pyrophosphate transport biological_process owl:Class GO:0008118 biolink:NamedThing N-acetyllactosaminide alpha-2,3-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein. tmpzr1t_l9r_go_relaxed.owl SiaT|cytidine monophosphoacetylneuraminate-beta-galactosyl(1->4)acetylglucosaminide alpha2->3-sialyltransferase activity|CMP-N-acetylneuraminate:beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-glycoprotein alpha-2,3-N-acetylneuraminyltransferase activity|alpha2->3 sialyltransferase activity MetaCyc:2.4.99.6-RXN|EC:2.4.99.6|RHEA:52316 molecular_function owl:Class GO:0031693 biolink:NamedThing alpha-1D adrenergic receptor binding Binding to an alpha-1D adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-1D adrenergic receptor ligand molecular_function owl:Class GO:0004615 biolink:NamedThing phosphomannomutase activity Catalysis of the reaction: alpha-D-mannose 1-phosphate = D-mannose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphomannose mutase activity|alpha-D-mannose 1,6-phosphomutase activity|D-mannose 1,6-phosphomutase activity|mannose phosphomutase activity KEGG_REACTION:R01818|Reactome:R-HSA-446201|MetaCyc:PHOSMANMUT-RXN|Reactome:R-HSA-3781926|EC:5.4.2.8|RHEA:11140 GO:0008971 molecular_function owl:Class GO:0044482 biolink:NamedThing envenomation resulting in blood vessel extracellular matrix damage, causing hemorrhagic damage in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism which causes damage to the extracellular matrix of the blood vessels of the bitten organism, ultimately resulting in hemorrhage in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in blood vessel ECM, causing hemorrhagic damage in other organism jl 2012-01-19T03:12:04Z biological_process owl:Class GO:0036239 biolink:NamedThing taxoid 7beta-hydroxylase activity Catalysis of the reaction: taxusin + O2 + NADPH + H+ = 7beta-hydroxytaxusin + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12885|KEGG_REACTION:R09868|EC:1.14.13.147|RHEA:31975 bf 2012-05-22T02:13:21Z molecular_function owl:Class GO:0006669 biolink:NamedThing sphinganine-1-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol. tmpzr1t_l9r_go_relaxed.owl sphinganine-1-phosphate synthesis|sphinganine-1-phosphate biosynthesis|sphinganine-1-phosphate anabolism|sphinganine-1-phosphate formation|dihydrosphingosine-1-phosphate biosynthetic process|dihydrosphingosine-1-phosphate biosynthesis biological_process owl:Class GO:0003846 biolink:NamedThing 2-acylglycerol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol. tmpzr1t_l9r_go_relaxed.owl acylglycerol palmitoyltransferase activity|acyl coenzyme A-monoglyceride acyltransferase activity|acyl-CoA:2-acylglycerol O-acyltransferase activity|monoacylglycerol acyltransferase activity|monoglyceride acyltransferase activity Reactome:R-HSA-5696448|EC:2.3.1.22|RHEA:16741|Reactome:R-HSA-6800334|MetaCyc:2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN molecular_function owl:Class GO:0010040 biolink:NamedThing response to iron(II) ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to iron(II) biological_process owl:Class GO:0060615 biolink:NamedThing mammary gland bud formation The morphogenetic process in which a bud forms from the mammary placode. A mammary bud is bulb of epithelial cells that is distinct from the surrounding epidermis. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-18T08:43:14Z biological_process owl:Class GO:0038057 biolink:NamedThing TNFSF11 binding Binding to tumor necrosis factor ligand superfamily member 11 (TNFSF11), a member of the tumor necrosis factor (TNF) cytokine family. tmpzr1t_l9r_go_relaxed.owl tumor necrosis factor ligand superfamily member 11 binding|osteoclast differentiation factor binding|RANKL binding|TRANCE binding|CD254 binding|receptor activator of nuclear factor kappa-B ligand binding|osteoprotegerin ligand binding|tumor necrosis factor (ligand) superfamily member 11 binding|tumor necrosis factor superfamily member 11 binding|TNF-related activation-induced cytokine binding|OPGL binding|ODF binding bf 2012-01-04T03:25:59Z molecular_function owl:Class GO:0043120 biolink:NamedThing tumor necrosis factor binding Binding to tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903945 biolink:NamedThing positive regulation of hepatocyte apoptotic process Any process that activates or increases the frequency, rate or extent of hepatocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of hepatocyte apoptosis|upregulation of hepatocyte apoptotic process|up regulation of hepatocyte apoptosis|upregulation of hepatocyte apoptosis|up regulation of hepatocyte apoptotic process|activation of hepatocyte apoptosis|up-regulation of hepatocyte apoptotic process|activation of hepatocyte apoptotic process|positive regulation of hepatocyte apoptosis sl 2015-02-19T12:54:59Z biological_process owl:Class GO:0061792 biolink:NamedThing secretory granule maturation Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodelling. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-09T13:24:34Z biological_process owl:Class GO:1990482 biolink:NamedThing sphingolipid alpha-glucuronosyltransferase activity Catalysis of the reaction: UDP-glucuronate + inositol phosphorylceramide (IPC) = UDP + GlcA-IPC. tmpzr1t_l9r_go_relaxed.owl inositol phosphorylceramide glucuronosyltransferase activity tb 2014-09-12T22:10:09Z molecular_function owl:Class GO:0099525 biolink:NamedThing presynaptic dense core vesicle exocytosis The secretion of molecules (e.g. neuropeptides and neuromodulators such as serotonin and dopamine) contained within a membrane-bounced dense in response to increased presynaptic cytosolic calcium levels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005641 biolink:NamedThing nuclear envelope lumen The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide. tmpzr1t_l9r_go_relaxed.owl nuclear membrane lumen|perinuclear space|nuclear intermembrane space Note that this term should not be confused with the cellular component term 'perinuclear region ; GO:0048471'. GO:0005653 cellular_component owl:Class GO:0090619 biolink:NamedThing meiotic spindle pole Either of the ends of a meiotic spindle, a spindle that forms as part of meiosis, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. tmpzr1t_l9r_go_relaxed.owl tb 2014-12-16T16:38:34Z cellular_component owl:Class GO:0007023 biolink:NamedThing post-chaperonin tubulin folding pathway Completion of folding of alpha- and beta-tubulin; takes place subsequent to chaperonin-mediated partial folding; mediated by a complex of folding cofactors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900084 biolink:NamedThing regulation of peptidyl-tyrosine autophosphorylation Any process that modulates the frequency, rate or extent of peptidyl-tyrosine autophosphorylation. tmpzr1t_l9r_go_relaxed.owl regulation of receptor tyrosine kinase autophosphorylation|regulation of tyrosine autophosphorylation bf 2012-02-03T10:17:07Z biological_process owl:Class GO:0046038 biolink:NamedThing GMP catabolic process The chemical reactions and pathways resulting in the breakdown of GMP, guanosine monophosphate. tmpzr1t_l9r_go_relaxed.owl GMP degradation|GMP breakdown|GMP catabolism biological_process owl:Class GO:0044565 biolink:NamedThing dendritic cell proliferation The expansion of a dendritic cell population by cell division. A dendritic cell is a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-05T04:31:39Z biological_process owl:Class GO:0004082 biolink:NamedThing bisphosphoglycerate mutase activity Catalysis of the reaction: 3-phospho-D-glyceroyl phosphate = 2,3-bisphospho-D-glycerate. tmpzr1t_l9r_go_relaxed.owl diphosphoglyceromutase activity|2,3-bisphosphoglycerate synthase activity|2,3-bisphosphoglycerate mutase activity|diphosphoglyceric mutase activity|2,3-diphosphoglycerate mutase activity|diphosphoglycerate mutase activity|biphosphoglycerate synthase activity|2,3-diphosphoglyceromutase activity|bisphosphoglyceromutase|DPGM|glycerate phosphomutase activity|3-phospho-D-glycerate 1,2-phosphomutase activity|BPGM activity|bisphosphoglycerate synthase activity|2,3-diphosphoglycerate synthase activity EC:5.4.2.4|MetaCyc:BISPHOSPHOGLYCERATE-MUTASE-RXN|RHEA:17765|Reactome:R-HSA-6798335 molecular_function owl:Class GO:0070274 biolink:NamedThing RES complex A protein complex that is required for efficient splicing, and prevents leakage of unspliced pre-mRNAs from the nucleus (named for pre-mRNA REtention and Splicing). In Saccharomyces, the complex consists of Ist3p, Bud13p, and Pml1p. tmpzr1t_l9r_go_relaxed.owl pre-mRNA retention and splicing complex cellular_component owl:Class GO:0150100 biolink:NamedThing RNA binding involved in posttranscriptional gene silencing Any RNA binding that is involved in posttranscriptional gene silencing. tmpzr1t_l9r_go_relaxed.owl RNA binding involved in PTGS|RNA binding involved in cosuppression|RNA binding involved in quelling|RNA binding involved in post-transcriptional gene silencing bc 2019-03-11T11:48:27Z molecular_function owl:Class GO:0032912 biolink:NamedThing negative regulation of transforming growth factor beta2 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta2. tmpzr1t_l9r_go_relaxed.owl negative regulation of TGFB2 production|downregulation of transforming growth factor-beta2 production|down-regulation of transforming growth factor-beta2 production|down regulation of transforming growth factor-beta2 production|inhibition of transforming growth factor-beta2 production|negative regulation of transforming growth factor-beta2 production|negative regulation of TGF-B2 production biological_process owl:Class GO:0005833 biolink:NamedThing hemoglobin complex An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group. tmpzr1t_l9r_go_relaxed.owl haemoglobin complex cellular_component owl:Class GO:0003868 biolink:NamedThing 4-hydroxyphenylpyruvate dioxygenase activity Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2. tmpzr1t_l9r_go_relaxed.owl p-hydroxyphenylpyruvic acid hydroxylase activity|p-hydroxyphenylpyruvic oxidase activity|p-hydroxyphenylpyruvate oxidase activity|4-hydroxyphenylpyruvate:oxygen oxidoreductase (hydroxylating, decarboxylating)|p-hydroxyphenylpyruvic hydroxylase activity|p-hydroxyphenylpyruvate dioxygenase activity|4-hydroxyphenylpyruvic acid dioxygenase activity|4-hydroxyphenylpyruvate hydroxylase activity|p-hydroxyphenylpyruvate hydroxylase activity UM-BBD_reactionID:r0298|Reactome:R-HSA-71163|EC:1.13.11.27|RHEA:16189|MetaCyc:4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN molecular_function owl:Class GO:0045973 biolink:NamedThing positive regulation of juvenile hormone secretion Any process that activates or increases the frequency, rate or extent of the regulated release of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl up-regulation of juvenile hormone secretion|up regulation of juvenile hormone secretion|activation of juvenile hormone secretion|stimulation of juvenile hormone secretion|upregulation of juvenile hormone secretion biological_process owl:Class GO:1903552 biolink:NamedThing negative regulation of extracellular exosome assembly Any process that stops, prevents or reduces the frequency, rate or extent of extracellular vesicular exosome assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of extracellular vesicular exosome assembly|downregulation of extracellular vesicular exosome assembly|down-regulation of extracellular vesicular exosome assembly|down regulation of extracellular vesicular exosome assembly|negative regulation of extracellular vesicular exosome assembly pga 2014-10-20T15:37:33Z biological_process owl:Class GO:0034579 biolink:NamedThing (1-methylpentyl)succinate synthase activity Catalysis of the reaction: fumarate + n-hexane = (1-methylpentyl)succinate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0920 molecular_function owl:Class GO:0010200 biolink:NamedThing response to chitin A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031920 biolink:NamedThing pyridoxal transport The directed movement of pyridoxal into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904197 biolink:NamedThing positive regulation of granulosa cell proliferation Any process that activates or increases the frequency, rate or extent of granulosa cell proliferation. tmpzr1t_l9r_go_relaxed.owl upregulation of granulosa cell proliferation|up-regulation of granulosa cell proliferation|up regulation of granulosa cell proliferation|activation of granulosa cell proliferation sl 2015-05-07T17:02:40Z biological_process owl:Class GO:1903815 biolink:NamedThing negative regulation of collecting lymphatic vessel constriction Any process that stops, prevents or reduces the frequency, rate or extent of collecting lymphatic vessel constriction. tmpzr1t_l9r_go_relaxed.owl downregulation of lymphatic vessel myogenic constriction|negative regulation of lymphatic vessel myogenic constriction|downregulation of collecting lymphatic vessel constriction|inhibition of collecting lymphatic vessel constriction|down-regulation of collecting lymphatic vessel constriction|inhibition of lymphatic vessel myogenic constriction|down-regulation of lymphatic vessel myogenic constriction|down regulation of collecting lymphatic vessel constriction|down regulation of lymphatic vessel myogenic constriction sl 2015-01-16T17:01:58Z biological_process owl:Class GO:2001107 biolink:NamedThing negative regulation of Rho guanyl-nucleotide exchange factor activity Any process that stops, prevents or reduces the frequency, rate or extent of Rho guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of RhoGEF|negative regulation of Rho guanine nucleotide exchange factor yaf 2011-09-23T10:13:12Z biological_process owl:Class GO:1901914 biolink:NamedThing negative regulation of capsule organization Any process that stops, prevents or reduces the frequency, rate or extent of capsule organization. tmpzr1t_l9r_go_relaxed.owl downregulation of capsule organisation|inhibition of capsule organization|down-regulation of capsule organization|down regulation of capsule organization and biogenesis|down regulation of capsule organization|downregulation of capsule organization and biogenesis|negative regulation of capsule organisation|negative regulation of capsule organization and biogenesis|down regulation of capsule organisation|down-regulation of capsule organization and biogenesis|inhibition of capsule organisation|downregulation of capsule organization|down-regulation of capsule organisation|inhibition of capsule organization and biogenesis di 2013-02-14T06:19:07Z biological_process owl:Class GO:1905295 biolink:NamedThing regulation of neural crest cell fate specification Any process that modulates the frequency, rate or extent of neural crest cell fate specification. tmpzr1t_l9r_go_relaxed.owl rl 2016-06-28T15:14:40Z biological_process owl:Class GO:1904323 biolink:NamedThing regulation of inhibitory G protein-coupled receptor phosphorylation Any process that modulates the frequency, rate or extent of inhibitory G protein-coupled receptor phosphorylation. tmpzr1t_l9r_go_relaxed.owl regulation of inhibitory G-protein coupled receptor phosphorylation sl 2015-06-10T19:46:37Z biological_process owl:Class GO:1990574 biolink:NamedThing meiotic spindle astral microtubule Any of the meiotic spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-04T09:55:09Z cellular_component owl:Class GO:0042668 biolink:NamedThing auditory receptor cell fate determination The process in which a cell becomes capable of differentiating autonomously into an auditory hair cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl auditory hair cell fate determination biological_process owl:Class GO:0044652 biolink:NamedThing adhesion of symbiont to host endothelial cell The attachment of a symbiont to a host endothelial cell via adhesion molecules, general stickiness etc., either directly or indirectly. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-12T12:49:07Z biological_process owl:Class GO:0090539 biolink:NamedThing peptide pheromone export by transmembrane transport The directed movement of a peptide pheromone across a membrane and out of a cell. tmpzr1t_l9r_go_relaxed.owl peptide pheromone export by membrane transport tb 2013-02-11T15:44:51Z biological_process owl:Class GO:0061241 biolink:NamedThing mesonephric nephron epithelium development The process whose specific outcome is the progression of the mesonephric nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:11:59Z biological_process owl:Class GO:0036167 biolink:NamedThing phenotypic switching in response to host A reversible switch of a cell from one phenotype to another that occurs upon infection of a host or host cell. For example, Candida albicans switches from a unicellular form to an invasive multicellular filamentous form upon infection of host tissue. Phenotypic switching begins with changes in cell morphology and altered gene expression patterns and ends when the morphology of a population of cells has reverted back to the default state, accompanied by altered expression patterns. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-27T01:44:24Z biological_process owl:Class GO:0089710 biolink:NamedThing endocytic targeting sequence binding Binding to a endocytic signal sequence, a specific peptide sequence, of 4-6 amino acids with an essential tyrosine (Y), found on cytoplasmic tails of some cell surface membrane proteins, which directs internalization by clathrin-coated pits. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034475 biolink:NamedThing U4 snRNA 3'-end processing Any process involved in forming the mature 3' end of a U4 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl U4 snRNA 3' end processing biological_process owl:Class GO:0035060 biolink:NamedThing brahma complex A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the Drosophila brm (brahma) or mammalian SMARCA2/BAF190B/BRM gene, or an ortholog thereof. tmpzr1t_l9r_go_relaxed.owl BRM complex cellular_component owl:Class GO:0031237 biolink:NamedThing intrinsic component of periplasmic side of plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that penetrate the periplasmic side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor. tmpzr1t_l9r_go_relaxed.owl intrinsic to periplasmic side of plasma membrane|intrinsic to external leaflet of plasma membrane, in periplasmic space GO:0031239 cellular_component owl:Class GO:0009914 biolink:NamedThing hormone transport The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032476 biolink:NamedThing decaprenyl diphosphate synthase complex A complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050537 biolink:NamedThing mandelamide amidase activity Catalysis of the reaction: (R)-mandelamide + H(2)O = (R)-mandelate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl mandelamide hydrolase activity|Pseudomonas mandelamide hydrolase activity RHEA:22876|KEGG_REACTION:R05783|EC:3.5.1.86|MetaCyc:3.5.1.86-RXN molecular_function owl:Class GO:0050629 biolink:NamedThing tetrachloroethene reductive dehalogenase activity Catalysis of the reaction: trichloroethene + chloride + acceptor = tetrachloroethene + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl tetrachloroethene reductase activity|acceptor:trichloroethene oxidoreductase (chlorinating) EC:1.21.99.5|RHEA:20353|MetaCyc:1.97.1.8-RXN molecular_function owl:Class GO:0071784 biolink:NamedThing endoplasmic reticulum cisternal network assembly The aggregation, arrangement and bonding together of a set of components to form the endoplasmic reticulum (ER) cisternal network. The ER cisternal network is the ER part that comprises the membranes with low curvature in cross-section. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum cisternal network formation|ER cisternal network assembly|ER cisternal network formation mah 2010-09-01T01:50:49Z biological_process owl:Class GO:0090427 biolink:NamedThing activation of meiosis Any process that starts the inactive process of meiosis. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-04T09:50:19Z biological_process owl:Class GO:1903781 biolink:NamedThing positive regulation of cardiac conduction Any process that activates or increases the frequency, rate or extent of cardiac conduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiac conduction|activation of cardiac conduction|up regulation of cardiac conduction|upregulation of cardiac conduction rph 2015-01-07T13:20:28Z biological_process owl:Class GO:0019134 biolink:NamedThing glucosamine-1-phosphate N-acetyltransferase activity Catalysis of the reaction: alpha-D-glucosamine 1-phosphate + acetyl-CoA = N-acetyl-alpha-D-glucosamine 1-phosphate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase activity|acetyl-CoA:alpha-D-glucosamine-1-phosphate N-acetyltransferase activity RHEA:13725|KEGG_REACTION:R05332|MetaCyc:2.3.1.157-RXN|EC:2.3.1.157 molecular_function owl:Class GO:0000725 biolink:NamedThing recombinational repair A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous DNA region. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Recombinational_repair biological_process owl:Class GO:2000593 biolink:NamedThing negative regulation of metanephric DCT cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of metanephric DCT cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of metanephric distal convoluted tubule cell differentiation yaf 2011-04-11T01:40:38Z biological_process owl:Class GO:0034379 biolink:NamedThing very-low-density lipoprotein particle assembly The non-covalent aggregation and arrangement of proteins and lipids in the liver to form a very-low-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl VLDL assembly biological_process owl:Class GO:0045046 biolink:NamedThing protein import into peroxisome membrane The targeting of proteins into the peroxisomal membrane. The process is not well understood, but both signals and mechanism differ from those involved in peroxisomal matrix protein import. tmpzr1t_l9r_go_relaxed.owl peroxisome membrane protein import|protein transport into peroxisome membrane biological_process owl:Class GO:0001119 biolink:NamedThing protein-DNA-RNA complex remodeling The acquisition, loss, or modification of macromolecules within a protein-DNA-RNA complex, resulting in the alteration of an existing complex. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-03T04:15:52Z biological_process owl:Class GO:0051970 biolink:NamedThing negative regulation of transmission of nerve impulse Any process that stops, prevents, or reduces the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation. tmpzr1t_l9r_go_relaxed.owl negative regulation of conduction of nerve impulse|inhibition of transmission of nerve impulse|down-regulation of transmission of nerve impulse|down regulation of transmission of nerve impulse|downregulation of transmission of nerve impulse biological_process owl:Class GO:0009139 biolink:NamedThing pyrimidine nucleoside diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside diphosphate biosynthesis|pyrimidine nucleoside diphosphate formation|pyrimidine nucleoside diphosphate synthesis|pyrimidine nucleoside diphosphate anabolism biological_process owl:Class GO:0103006 biolink:NamedThing 9,10-dihydroxystearate hydroxylase activity Catalysis of the reaction: H+ + (9R,10S)-dihydroxystearate + O2 + NADPH <=> 9,10,18-trihydroxystearate + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9807 molecular_function owl:Class GO:0045314 biolink:NamedThing regulation of compound eye photoreceptor development Any process that modulates the frequency, rate or extent of compound eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl regulation of eye photoreceptor development biological_process owl:Class GO:0042478 biolink:NamedThing regulation of eye photoreceptor cell development Any process that modulates the frequency, rate or extent of eye photoreceptor development. tmpzr1t_l9r_go_relaxed.owl regulation of eye photoreceptor development biological_process owl:Class GO:0060212 biolink:NamedThing negative regulation of nuclear-transcribed mRNA poly(A) tail shortening Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length. tmpzr1t_l9r_go_relaxed.owl negative regulation of mRNA deadenylation|negative regulation of 3' to 5' mRNA deadenylation|negative regulation of nuclear mRNA poly(A) tail shortening biological_process owl:Class GO:1900152 biolink:NamedThing negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Any process that stops, prevents or reduces the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. tmpzr1t_l9r_go_relaxed.owl down regulation of mRNA catabolic process, deadenylylation-dependent|inhibition of mRNA catabolism, deadenylation-dependent|down regulation of mRNA catabolic process, deadenylation-dependent|down-regulation of mRNA catabolic process, deadenylation-dependent|inhibition of mRNA catabolic process, deadenylylation-dependent|down regulation of mRNA breakdown, deadenylation-dependent decay|down regulation of deadenylation-dependent mRNA decay|down-regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|down-regulation of mRNA catabolic process, deadenylylation-dependent|downregulation of mRNA catabolic process, deadenylylation-dependent|down-regulation of mRNA degradation, deadenylation-dependent decay|down-regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|negative regulation of mRNA catabolism, deadenylation-dependent|down regulation of mRNA catabolism, deadenylylation-dependent|inhibition of mRNA catabolic process, deadenylation-dependent|down regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|down regulation of mRNA catabolism, deadenylation-dependent|down-regulation of mRNA catabolism, deadenylylation-dependent|down-regulation of deadenylation-dependent mRNA decay|downregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|downregulation of mRNA catabolic process, deadenylation-dependent|down-regulation of mRNA catabolism, deadenylation-dependent|downregulation of mRNA degradation, deadenylation-dependent decay|inhibition of mRNA breakdown, deadenylation-dependent decay|down regulation of mRNA degradation, deadenylation-dependent decay|downregulation of deadenylation-dependent mRNA decay|negative regulation of mRNA degradation, deadenylation-dependent decay|inhibition of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay|negative regulation of mRNA breakdown, deadenylation-dependent decay|downregulation of mRNA breakdown, deadenylation-dependent decay|downregulation of nuclear mRNA catabolic process, deadenylation-dependent decay|negative regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|negative regulation of mRNA catabolism, deadenylylation-dependent|downregulation of mRNA catabolism, deadenylylation-dependent|inhibition of mRNA degradation, deadenylation-dependent decay|down regulation of nuclear mRNA catabolic process, deadenylation-dependent decay|negative regulation of deadenylation-dependent mRNA decay|negative regulation of mRNA catabolic process, deadenylylation-dependent|down-regulation of mRNA breakdown, deadenylation-dependent decay|inhibition of deadenylation-dependent mRNA decay|inhibition of nuclear mRNA catabolic process, deadenylation-dependent decay|inhibition of mRNA catabolism, deadenylylation-dependent|downregulation of mRNA catabolism, deadenylation-dependent|negative regulation of mRNA catabolic process, deadenylation-dependent bf 2012-03-07T09:14:49Z biological_process owl:Class GO:1902737 biolink:NamedThing dendritic filopodium A small, membranous protrusion found primarily on dendritic stretches of developing neurons. May receive synaptic input, and can develop into dendritic spines. tmpzr1t_l9r_go_relaxed.owl dendrite filopodium Dendritic filopodia are generally less-well studied than dendritic spines because their transient nature makes them difficult to detect with traditional microscopy techniques, and because they are sometimes destroyed by sample preparation. Note that filopodia on dendritic shafts are distinct from other types of filopodia (even those found in dendritic growth cones) and may react differently to stimuli, as shown in PMID:12904473. pr 2014-02-26T14:28:26Z cellular_component owl:Class GO:0102214 biolink:NamedThing omega-hydroxy fatty acyl-CoA synthetase activity Catalysis of the reaction: coenzyme A + ATP + an omega-hydroxy fatty acid = diphosphoric acid + AMP + a omega-hydroxyacyl-CoA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12185 molecular_function owl:Class GO:0052023 biolink:NamedThing modulation by symbiont of salicylic acid levels in host The alteration by an organism of the levels of salicylic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of salicylic acid levels in other organism involved in symbiotic interaction GO:0052469 biological_process owl:Class GO:0099059 biolink:NamedThing integral component of presynaptic active zone membrane The component of the presynaptic active zone membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:2000973 biolink:NamedThing regulation of pro-B cell differentiation Any process that modulates the frequency, rate or extent of pro-B cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of pro-B cell development|regulation of pro-B lymphocyte differentiation yaf 2011-08-02T03:05:45Z biological_process owl:Class GO:0035431 biolink:NamedThing negative regulation of gluconate transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of gluconate membrane transport|down-regulation of gluconate transport|inhibition of gluconate transport|negative regulation of gluconate transport|down regulation of gluconate transport|downregulation of gluconate transport bf 2010-04-08T10:39:08Z GO:0032894 biological_process owl:Class GO:0097037 biolink:NamedThing heme export The directed movement of heme out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-11T10:39:22Z biological_process owl:Class GO:0060206 biolink:NamedThing estrous cycle phase The progression of physiological phases, occurring in the endometrium during the estrous cycle that recur at regular intervals during the reproductive years. The estrous cycle is an ovulation cycle where the endometrium is resorbed if pregnancy does not occur. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0046739 biolink:NamedThing transport of virus in multicellular host The transport of a virus between cells in a multicellular organism. The cells can be adjacent or spatially separated (e.g. in different tissues or organs). tmpzr1t_l9r_go_relaxed.owl spread of virus in multicellular host|viral spread within multicellular host|spread of virus within multicellular host biological_process owl:Class GO:0030134 biolink:NamedThing COPII-coated ER to Golgi transport vesicle A vesicle with a coat formed of the COPII coat complex proteins. The COPII coat complex is formed by the Sec23p/Sec24p and the Sec13p/Sec31p heterodimers. COPII-associated vesicles transport proteins from the rough endoplasmic reticulum to the Golgi apparatus (anterograde transport). tmpzr1t_l9r_go_relaxed.owl ER to Golgi transport vesicle|COPII-coated vesicle|ER-Golgi transport vesicle|ER to Golgi constitutive secretory pathway transport vesicle|endoplasmic reticulum-Golgi transport vesicle|COPII vesicle|COPII-associated ER to Golgi transport vesicle|endoplasmic reticulum to Golgi transport vesicle|COPII-associated vesicle pg 2017-06-22T16:26:57Z GO:0140045|GO:0030138 cellular_component owl:Class GO:0101020 biolink:NamedThing estrogen 16-alpha-hydroxylase activity Catalysis of the reaction: estrogen + donor-H2 + O2 = 16-alpha-hydroxyestrogen + H2O. tmpzr1t_l9r_go_relaxed.owl oestrogen 16-alpha-hydroxylase activity molecular_function owl:Class GO:0019165 biolink:NamedThing thiamine kinase activity Catalysis of the reaction: ATP + thiamine = ADP + 2 H(+) + thiamine phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:thiamin phosphotransferase activity|thiamin kinase (phosphorylating)|thiamin phosphokinase activity|ATP:thiamine phosphotransferase activity|thiamin kinase activity MetaCyc:THIKIN-RXN|KEGG_REACTION:R02134|RHEA:12012|EC:2.7.1.89 molecular_function owl:Class GO:0019970 biolink:NamedThing interleukin-11 binding Binding to interleukin-11. tmpzr1t_l9r_go_relaxed.owl IL-11 binding molecular_function owl:Class GO:0021858 biolink:NamedThing GABAergic neuron differentiation in basal ganglia The process in which a neuroblast acquires the specialized structural and functional features of a GABAergic inhibitory neuron in the basal ganglia. Differentiation includes the processes involved in commitment of a neuroblast to a GABAergic neuron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001113 biolink:NamedThing negative regulation of cellular response to hepatocyte growth factor stimulus Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to hepatocyte growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular response to HGF stimulus dph 2011-10-05T05:43:23Z biological_process owl:Class GO:1905520 biolink:NamedThing positive regulation of presynaptic active zone assembly Any process that activates or increases the frequency, rate or extent of presynaptic active zone assembly. tmpzr1t_l9r_go_relaxed.owl upregulation of presynaptic active zone formation|activation of presynaptic active zone formation|up regulation of presynaptic active zone formation|upregulation of pre-synaptic active zone assembly|up regulation of pre-synaptic active zone component assembly|up-regulation of pre-synaptic active zone formation|upregulation of presynaptic active zone assembly|activation of pre-synaptic active zone component formation|up-regulation of presynaptic active zone assembly|up-regulation of pre-synaptic active zone component assembly|up regulation of presynaptic active zone assembly|up regulation of pre-synaptic active zone formation|positive regulation of pre-synaptic active zone formation|positive regulation of pre-synaptic active zone assembly|positive regulation of pre-synaptic active zone component formation|upregulation of pre-synaptic active zone formation|positive regulation of pre-synaptic active zone component assembly|activation of pre-synaptic active zone assembly|up-regulation of pre-synaptic active zone assembly|activation of pre-synaptic active zone formation|upregulation of pre-synaptic active zone component assembly|up regulation of pre-synaptic active zone component formation|positive regulation of presynaptic active zone formation|up regulation of pre-synaptic active zone assembly|activation of pre-synaptic active zone component assembly|up-regulation of presynaptic active zone formation|activation of presynaptic active zone assembly|up-regulation of pre-synaptic active zone component formation|upregulation of pre-synaptic active zone component formation rl 2016-10-01T09:38:07Z biological_process owl:Class GO:0015333 biolink:NamedThing peptide:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: peptide(out) + H+(out) = peptide(in) + H+(in), up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by hydrogen ion movement. tmpzr1t_l9r_go_relaxed.owl peptide:hydrogen symporter activity Reactome:R-HSA-428007|RHEA:37047|Reactome:R-HSA-427998 molecular_function owl:Class GO:0061621 biolink:NamedThing canonical glycolysis The glycolytic process that begins with the conversion of glucose to glucose-6-phosphate by glucokinase activity. Glycolytic processes are the chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY66-400|Reactome:R-HSA-70171|MetaCyc:ANAGLYCOLYSIS-PWY|Wikipedia:Glycolysis dph 2014-04-14T09:21:54Z biological_process owl:Class GO:0035742 biolink:NamedThing activated CD8-positive, alpha-beta T cell proliferation The expansion of an activated CD8-positive, alpha-beta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T02:19:58Z biological_process owl:Class GO:0008918 biolink:NamedThing lipopolysaccharide 3-alpha-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + lipopolysaccharide = UDP + 1,3 alpha-D-galactosyl-lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl uridine diphosphate galactose:lipopolysaccharide alpha-3-galactosyltransferase activity|LPS 3-alpha-galactosyltransferase activity|UDPgalactose:lipopolysaccharide 3-alpha-D-galactosyltransferase activity|lipopolysaccharide-alpha-1,3-D-galactosyltransferase|UDP-galactose:lipopolysaccharide alpha,3-galactosyltransferase activity|UDP-galactose:polysaccharide galactosyltransferase activity|uridine diphosphogalactose-lipopolysaccharide alpha,3-galactosyltransferase activity|lipopolysaccharide galactosyltransferase activity|UDP-galactose:lipopolysaccharide 3-alpha-D-galactosyltransferase activity|lipopolysaccharide 1,3-galactosyltransferase activity EC:2.4.1.44|MetaCyc:2.4.1.44-RXN molecular_function owl:Class GO:0047762 biolink:NamedThing caffeate 3,4-dioxygenase activity Catalysis of the reaction: trans-caffeate + O(2) = 3-(2-carboxyethenyl)-cis,cis-muconate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 3,4-dihydroxy-trans-cinnamate:oxygen 3,4-oxidoreductase (decyclizing) EC:1.13.11.22|KEGG_REACTION:R03365|MetaCyc:CAFFEATE-34-DIOXYGENASE-RXN|RHEA:22216 molecular_function owl:Class GO:0019349 biolink:NamedThing ribitol metabolic process The chemical reactions and pathways involving ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. It occurs free in some plants and is a component of riboflavin. tmpzr1t_l9r_go_relaxed.owl ribitol metabolism biological_process owl:Class GO:0000011 biolink:NamedThing vacuole inheritance The distribution of vacuoles into daughter cells after mitosis or meiosis, mediated by interactions between vacuoles and the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000719 biolink:NamedThing photoreactive repair The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines. tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair by photolyase biological_process owl:Class GO:0018620 biolink:NamedThing phthalate 4,5-dioxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + phthalate = cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylate + NAD(+). tmpzr1t_l9r_go_relaxed.owl phthalate dioxygenase activity|PDO activity|phthalate,NADH:oxygen oxidoreductase (4,5-hydroxylating) UM-BBD_reactionID:r0102|MetaCyc:PHTHALATE-45-DIOXYGENASE-RXN|RHEA:17489|EC:1.14.12.7|KEGG_REACTION:R03630 molecular_function owl:Class GO:0033638 biolink:NamedThing modulation by symbiont of host response to heat Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to heat shock biological_process owl:Class GO:0070731 biolink:NamedThing cGMP transport The directed movement of cyclic GMP (cGMP), into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl cyclic GMP transport mah 2009-06-17T04:40:27Z biological_process owl:Class GO:0061239 biolink:NamedThing mesenchymal stem cell differentiation involved in mesonephric nephron morphogenesis The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell that contributes to the shaping of a nephronin the mesonephros. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:06:46Z biological_process owl:Class GO:0000404 biolink:NamedThing heteroduplex DNA loop binding Binding to a DNA segment containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration. tmpzr1t_l9r_go_relaxed.owl loop DNA binding molecular_function owl:Class GO:0010301 biolink:NamedThing xanthoxin dehydrogenase activity Catalysis of the reaction: NAD(+) + xanthoxin = (+)-abscisic aldehyde + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl xanthoxin oxidase activity|xanthoxin:NAD+ oxidoreductase activity|ABA2 KEGG_REACTION:R06954|MetaCyc:1.1.1.288-RXN|RHEA:12548|EC:1.1.1.288 GO:0033710 molecular_function owl:Class GO:0102458 biolink:NamedThing cyanidin 3-O-glucoside 5-O glucosyltransferase (vanilloyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-vanilloyl-beta-D-glucose <=> cyanin betaine + vanillate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13970|EC:2.4.1.299 molecular_function owl:Class GO:0006148 biolink:NamedThing inosine catabolic process The chemical reactions and pathways resulting in the breakdown of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs. tmpzr1t_l9r_go_relaxed.owl inosine breakdown|inosine degradation|inosine catabolism biological_process owl:Class GO:0044349 biolink:NamedThing DNA excision The removal of a section of DNA from a larger DNA molecule by the making of dual incisions that flank the section to be excised. tmpzr1t_l9r_go_relaxed.owl jl 2011-08-03T10:56:37Z biological_process owl:Class GO:0106078 biolink:NamedThing histone succinyltransferase activity Catalysis of the reaction: succinyl-CoA + histone = CoA + succinyl-histone. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-15T18:29:40Z molecular_function owl:Class GO:0106075 biolink:NamedThing peptide N-succinyltransferase activity Catalysis of the acetylation of an amino acid residue of a peptide or protein, according to the reaction: succinyl-CoA + peptide = CoA + N-succinylpeptide. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-15T18:23:58Z molecular_function owl:Class GO:0060904 biolink:NamedThing regulation of protein folding in endoplasmic reticulum Any process that modulates the rate, frequency or extent of the protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation). tmpzr1t_l9r_go_relaxed.owl dph 2009-08-14T01:12:00Z biological_process owl:Class GO:0042719 biolink:NamedThing mitochondrial intermembrane space protein transporter complex Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl Tim9-Tim10 complex cellular_component owl:Class GO:1904284 biolink:NamedThing positive regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I Any process that activates or increases the frequency, rate or extent of antigen processing and presentation of endogenous peptide antigen via MHC class I. tmpzr1t_l9r_go_relaxed.owl activation of antigen processing and presentation of endogenous peptide antigen via MHC class I|up-regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|up regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|activation of endogenous peptide antigen processing and presentation via MHC class I|up regulation of endogenous peptide antigen processing and presentation via MHC class I|positive regulation of endogenous peptide antigen processing and presentation via MHC class I|upregulation of antigen processing and presentation of endogenous peptide antigen via MHC class I|up-regulation of endogenous peptide antigen processing and presentation via MHC class I|upregulation of endogenous peptide antigen processing and presentation via MHC class I rl 2015-06-04T12:05:49Z biological_process owl:Class GO:1990830 biolink:NamedThing cellular response to leukemia inhibitory factor Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukemia inhibitory factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to cholinergic differentiation factor|cellular response to CDF sl 2015-08-20T19:30:38Z biological_process owl:Class GO:1990823 biolink:NamedThing response to leukemia inhibitory factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukemia inhibitory factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to cholinergic differentiation factor|response to CDF|response to LIF sl 2015-08-19T16:44:21Z biological_process owl:Class GO:0097629 biolink:NamedThing extrinsic component of omegasome membrane The component of the omegasome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl omegasome peripheral membrane|extrinsic to omegasome membrane cellular_component owl:Class GO:1905442 biolink:NamedThing cellular response to chondroitin 4'-sulfate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chondroitin 4'-sulfate stimulus. tmpzr1t_l9r_go_relaxed.owl cvs 2016-09-14T18:56:34Z biological_process owl:Class GO:1901974 biolink:NamedThing glycerate transmembrane transporter activity Enables the transfer of glycerate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl ms 2013-03-05T16:48:45Z molecular_function owl:Class GO:0097144 biolink:NamedThing BAX complex An oligomeric protein complex consisting of BAX, a member of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:45:15Z cellular_component owl:Class GO:0033637 biolink:NamedThing modulation by symbiont of host response to cold Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl freezing tolerance biological_process owl:Class GO:0004317 biolink:NamedThing 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity Catalysis of the reaction: (3R)-3-hydroxypalmitoyl-[acyl-carrier protein] = 2-hexadecenoyl-[acyl-carrier protein] + H2O. tmpzr1t_l9r_go_relaxed.owl (3R)-3-hydroxypalmitoyl-acyl-carrier-protein hydro-lyase (hexadec-2-enoyl-acyl-carrier protein-forming)|(3R)-3-hydroxypalmitoyl-acyl-carrier-protein hydro-lyase activity|3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase activity|D-3-hydroxypalmitoyl-acyl-carrier-protein dehydratase activity|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase activity|3-hydroxypalmitoyl-ACP dehydratase activity|3-hydroxypalmitoyl-acyl-carrier-protein dehydratase activity|beta-hydroxypalmitoyl thioester dehydratase activity|beta-hydroxypalmitoyl-acyl carrier protein dehydrase activity|beta-hydroxypalmityl-ACP dehydrase activity|D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity RHEA:41908|MetaCyc:4.2.1.61-RXN|EC:4.2.1.59|KEGG_REACTION:R04462 molecular_function owl:Class GO:0106263 biolink:NamedThing 1-acylglycerophosphoserine O-acyltransferase activity Catalysis of the reaction:a 1-acyl-sn-glycero-3-phospho-L-serine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phospho-L-serine + CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:33191 hjd 2020-05-18T15:12:42Z molecular_function owl:Class GO:2000716 biolink:NamedThing negative regulation of maintenance of mitotic sister chromatid cohesion, arms Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl negative regulation of maintenance of mitotic sister chromatin cohesion along arms|negative regulation of maintenance of sister chromatin cohesion along arms at mitosis mah 2011-06-03T10:38:32Z biological_process owl:Class GO:0009217 biolink:NamedThing purine deoxyribonucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine deoxyribonucleoside triphosphate breakdown|purine deoxyribonucleoside triphosphate catabolism|purine deoxyribonucleoside triphosphate degradation biological_process owl:Class GO:0010510 biolink:NamedThing regulation of acetyl-CoA biosynthetic process from pyruvate Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110063 biolink:NamedThing positive regulation of angiotensin-activated signaling pathway Any process that activates or increases the frequency, rate or extent of the angiotensin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-26T17:47:37Z biological_process owl:Class GO:0035227 biolink:NamedThing regulation of glutamate-cysteine ligase activity Any process that modulates the activity of glutamate-cysteine ligase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097438 biolink:NamedThing exit from dormancy The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. tmpzr1t_l9r_go_relaxed.owl release from dormancy pr 2012-12-05T15:01:24Z biological_process owl:Class GO:0047567 biolink:NamedThing 3-methyleneoxindole reductase activity Catalysis of the reaction: 3-methyloxindole + NADP(+) = 3-methyleneoxindole + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-methyloxindole:NADP+ oxidoreductase activity|3-methyl-1,3-dihydroindol-2-one:NADP+ oxidoreductase activity RHEA:20257|MetaCyc:3-METHYLENEOXINDOLE-REDUCTASE-RXN|EC:1.3.1.17|KEGG_REACTION:R03930 molecular_function owl:Class GO:0035504 biolink:NamedThing regulation of myosin light chain kinase activity Any process that modulates the frequency, rate or extent of myosin light chain kinase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:47:11Z biological_process owl:Class GO:0061191 biolink:NamedThing positive regulation of vacuole fusion, non-autophagic Any process that increases the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-14T09:33:31Z biological_process owl:Class GO:0006801 biolink:NamedThing superoxide metabolic process The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. tmpzr1t_l9r_go_relaxed.owl oxygen free radical metabolic process|oxygen free radical metabolism|superoxide free radical metabolism|superoxide free radical metabolic process|superoxide metabolism biological_process owl:Class GO:0003133 biolink:NamedThing endodermal-mesodermal cell signaling Any process that mediates the transfer of information from endodermal cells to mesodermal cells. tmpzr1t_l9r_go_relaxed.owl endodermal-mesodermal cell signalling tb 2009-09-22T03:10:29Z biological_process owl:Class GO:0004594 biolink:NamedThing pantothenate kinase activity Catalysis of the reaction: ATP + pantothenate = ADP + D-4'-phosphopantothenate. tmpzr1t_l9r_go_relaxed.owl pantothenic acid kinase activity|ATP:(R)-pantothenate 4'-phosphotransferase activity|pantothenate kinase (phosphorylating) activity|ATP:pantothenate 4'-phosphotransferase activity|D-pantothenate kinase activity MetaCyc:PANTOTHENATE-KIN-RXN|Reactome:R-HSA-199203|EC:2.7.1.33|RHEA:16373|Reactome:R-HSA-196857 molecular_function owl:Class GO:0005927 biolink:NamedThing muscle tendon junction A cell-substrate junction found at the terminal anchorage site of skeletal muscle cells to tendons. tmpzr1t_l9r_go_relaxed.owl myotendinous junction cellular_component owl:Class GO:0031750 biolink:NamedThing D3 dopamine receptor binding Binding to a D3 dopamine receptor. tmpzr1t_l9r_go_relaxed.owl D3 dopamine receptor ligand molecular_function owl:Class GO:0018952 biolink:NamedThing parathion metabolic process The chemical reactions and pathways involving parathion, a highly toxic organophosphate compound formerly used as a broad spectrum insecticide, acaricide, fumigant and nematocide. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition. tmpzr1t_l9r_go_relaxed.owl parathion metabolism UM-BBD_pathwayID:pthn biological_process owl:Class GO:0002261 biolink:NamedThing mucosal lymphocyte homeostasis The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within the mucosal tissue of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901959 biolink:NamedThing positive regulation of cutin biosynthetic process Any process that activates or increases the frequency, rate or extent of cutin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of cutin biosynthesis|positive regulation of cutin formation|upregulation of cutin synthesis|activation of cutin formation|activation of cutin anabolism|upregulation of cutin formation|upregulation of cutin anabolism|up regulation of cutin anabolism|positive regulation of cutin anabolism|positive regulation of cutin synthesis|activation of cutin biosynthetic process|upregulation of cutin biosynthesis|activation of cutin biosynthesis|up regulation of cutin synthesis|up regulation of cutin formation|up-regulation of cutin formation|up-regulation of cutin anabolism|positive regulation of cutin biosynthesis|up regulation of cutin biosynthesis|activation of cutin synthesis|upregulation of cutin biosynthetic process|up regulation of cutin biosynthetic process|up-regulation of cutin biosynthetic process|up-regulation of cutin synthesis tb 2013-02-19T19:06:19Z biological_process owl:Class GO:0016939 biolink:NamedThing kinesin II complex A complex consisting of two distinct motor subunits that form a heterodimer complexed with a third non-motor accessory subunit, the kinesin associated protein or KAP; the KIF3 heterodimer interacts via its C-terminal portion with KAP, which is thought to regulate the binding of the motor to cargo membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030497 biolink:NamedThing fatty acid elongation The elongation of a fatty acid chain by the sequential addition of two-carbon units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008160 biolink:NamedThing protein tyrosine phosphatase activator activity Binds to and increases the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a tyrosyl phenolic group of a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050588 biolink:NamedThing apo-beta-carotenoid-14',13'-dioxygenase activity Catalysis of the reaction: 8'-apo-beta-carotenol + O(2) = (E,E)-7-hydroxy-6-methylhepta-3,5-dienal + 14'-apo-beta-carotenal. tmpzr1t_l9r_go_relaxed.owl apo-b-carotenoid-14',13'-dioxygenase activity|8'-apo-beta-carotenol:O2 oxidoreductase activity KEGG_REACTION:R08889|MetaCyc:1.13.12.12-RXN|RHEA:26023|EC:1.13.11.67 molecular_function owl:Class GO:2001025 biolink:NamedThing positive regulation of response to drug Any process that activates or increases the frequency, rate or extent of response to drug. tmpzr1t_l9r_go_relaxed.owl positive regulation of drug susceptibility/resistance|positive regulation of drug resistance yaf 2011-08-19T01:47:27Z biological_process owl:Class GO:2001023 biolink:NamedThing regulation of response to drug Any process that modulates the frequency, rate or extent of response to drug. tmpzr1t_l9r_go_relaxed.owl regulation of drug resistance|regulation of drug susceptibility/resistance yaf 2011-08-19T01:47:20Z biological_process owl:Class GO:0070740 biolink:NamedThing tubulin-glutamic acid ligase activity Catalysis of the posttranslational transfer of one or more glutamate residues to the gamma-carboxyl group(s) of one or more specific glutamate residues on a tubulin molecule. tmpzr1t_l9r_go_relaxed.owl tubulin glutamylase activity|tubulin-glutamate ligase activity Reactome:R-HSA-8865774|Reactome:R-HSA-8955869 mah 2009-06-19T02:26:15Z molecular_function owl:Class GO:0050618 biolink:NamedThing phycoerythrobilin:ferredoxin oxidoreductase activity Catalysis of the reaction: (3Z)-phycoerythrobilin + oxidized ferredoxin = 15,16-dihydrobiliverdin + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl PebB|(3Z)-phycoerythrobilin:ferredoxin oxidoreductase activity RHEA:22092|MetaCyc:1.3.7.3-RXN|EC:1.3.7.3 molecular_function owl:Class GO:1903698 biolink:NamedThing positive regulation of microvillus assembly Any process that activates or increases the frequency, rate or extent of microvillus assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of microvillus assembly|up-regulation of microvillus biogenesis|up-regulation of microvillus assembly|activation of microvillus assembly|up regulation of microvillus biogenesis|activation of microvillus biogenesis|positive regulation of microvillus biogenesis|upregulation of microvillus assembly|upregulation of microvillus biogenesis als 2014-12-03T11:45:17Z biological_process owl:Class GO:2000410 biolink:NamedThing regulation of thymocyte migration Any process that modulates the frequency, rate or extent of thymocyte migration. tmpzr1t_l9r_go_relaxed.owl regulation of immature T-lymphocyte migration|regulation of immature T-cell migration|regulation of immature T cell migration|regulation of thymic lymphocyte migration|regulation of immature T lymphocyte migration mah 2011-02-23T01:33:32Z biological_process owl:Class GO:0097255 biolink:NamedThing R2TP complex A highly conserved protein complex comprised of two ATP-dependent DNA helicases (Rvb1p and Rvb2p in yeast, Pontin52 and Reptin52 in humans), Pih1p in yeast or PIH1D1 in humans, and Tah1 in yeast or RPAP3 in humans. The complex associates with Hsp90 and is thought to have a role in assembly of large protein or protein/nucleic acid complexes. In this role it is involved in multiple processes such as box C/D snoRNP biogenesis, phosphatidylinositol-3 kinase-related protein kinase (PIKK) signaling, RNA polymerase II assembly, and others. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-06T11:16:33Z cellular_component owl:Class GO:0043399 biolink:NamedThing tRNA A64-2'-O-ribosylphosphate transferase activity Catalysis of the transfer of a phosphoribosyl group from 5'-phosphoribosyl-1'-pyrophosphate to position 64 of initiator tRNA. tmpzr1t_l9r_go_relaxed.owl initiator tRNA phosphoribosyl-transferase activity molecular_function owl:Class GO:0106378 biolink:NamedThing 2-hydroxy-dATP hydrolase activity Catalysis of the reaction: 2-hydroxy-dATP + H2O = 2-hydroxy-dAMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:31583 hjd 2021-04-23T00:14:20Z molecular_function owl:Class GO:0004371 biolink:NamedThing glycerone kinase activity Catalysis of the reaction: ATP + glycerone = ADP + glycerone phosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:glycerone phosphotransferase activity|dihydroxyacetone kinase activity|acetol kinase (phosphorylating)|acetol kinase activity MetaCyc:GLYCERONE-KINASE-RXN|EC:2.7.1.29|KEGG_REACTION:R01011|RHEA:15773 molecular_function owl:Class GO:0046782 biolink:NamedThing regulation of viral transcription Any process that modulates the frequency, rate or extent of the transcription of the viral genome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902575 biolink:NamedThing protein localization to cell division site involved in cytokinesis, actomyosin contractile ring assembly Any protein localization to cell division site that is involved in cytokinesis, actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl protein localization to cell division site involved in cytokinesis, actomyosin ring formation|protein localisation to cell division site involved in cytokinesis, actomyosin ring formation|protein localisation to cell division site involved in contractile ring assembly|protein localization to cell division site involved in cytokinesis, actomyosin contractile ring formation|protein localisation to cell division site involved in constriction ring assembly|protein localization to cell division site involved in constriction ring assembly|protein localisation to cell division site involved in cytokinesis, actomyosin ring biosynthesis|protein localization to cell division site involved in contractile ring assembly|protein localization to cell division site involved in cytokinesis, contractile ring assembly|protein localisation to cell division site involved in cytokinesis, actomyosin contractile ring assembly|protein localization to cell division site involved in cytokinesis, actomyosin ring biosynthesis|protein localisation to cell division site involved in cytokinesis, contractile ring assembly|protein localisation to cell division site involved in cytokinesis, actomyosin contractile ring formation bf 2013-12-16T10:42:25Z biological_process owl:Class GO:0021812 biolink:NamedThing neuronal-glial interaction involved in cerebral cortex radial glia guided migration The changes in adhesion between neuronal cells and glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration. tmpzr1t_l9r_go_relaxed.owl neuronal-glial interaction involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0044071 biolink:NamedThing modulation by symbiont of host cell cycle The process in which a symbiont organism effects a change in its host's cell cycle through direct interactions with the host cell macromolecular machinery. tmpzr1t_l9r_go_relaxed.owl modulation of host cell cycle by symbiont|regulation by symbiont of host cell cycle|modification by symbiont of host cell cycle biological_process owl:Class GO:0008713 biolink:NamedThing ADP-heptose-lipopolysaccharide heptosyltransferase activity Catalysis of the reaction: heptosyl-KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose = heptosyl2-KDO2-lipid A + ADP + H+. tmpzr1t_l9r_go_relaxed.owl ADP-heptose:LPS heptosyltransferase activity MetaCyc:RXN0-5061|RHEA:28538 molecular_function owl:Class GO:1905800 biolink:NamedThing negative regulation of intraciliary retrograde transport Any process that stops, prevents or reduces the frequency, rate or extent of intraciliary retrograde transport. tmpzr1t_l9r_go_relaxed.owl down regulation of intraflagellar retrograde transport|down-regulation of intraciliary retrograde transport|inhibition of intraciliary retrograde transport|down-regulation of intraflagellar retrograde transport|downregulation of intraciliary retrograde transport|inhibition of intraflagellar retrograde transport|downregulation of intraflagellar retrograde transport|down regulation of intraciliary retrograde transport|negative regulation of intraflagellar retrograde transport hbye 2017-01-11T12:58:26Z biological_process owl:Class GO:0009532 biolink:NamedThing plastid stroma The proteinaceous ground substance of plastids. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044394 biolink:NamedThing protein malonylation The modification of a protein amino acid by the addition of a malonyl (CO-CH2-CO) group. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T09:26:37Z biological_process owl:Class GO:1905415 biolink:NamedThing positive regulation of dense core granule exocytosis Any process that activates or increases the frequency, rate or extent of dense core granule exocytosis. tmpzr1t_l9r_go_relaxed.owl up-regulation of dense core granule exocytosis|upregulation of dense core granule exocytosis|upregulation of dense core vesicle exocytosis|up-regulation of dense core vesicle exocytosis|up regulation of dense core vesicle exocytosis|activation of dense core vesicle exocytosis|activation of dense core granule exocytosis|up regulation of dense core granule exocytosis|positive regulation of dense core vesicle exocytosis bf 2016-08-31T08:02:36Z biological_process owl:Class GO:0046502 biolink:NamedThing uroporphyrinogen III metabolic process The chemical reactions and pathways involving uroporphyrinogen III, a precursor for synthesis of vitamin B12, chlorophyll, and heme in organisms that produce these compounds. tmpzr1t_l9r_go_relaxed.owl uroporphyrinogen III metabolism biological_process owl:Class GO:0050632 biolink:NamedThing propionyl-CoA C2-trimethyltridecanoyltransferase activity Catalysis of the reaction: 4,8,12-trimethyltridecanoyl-CoA + propanoyl-CoA = 3-oxopristanoyl-CoA + CoA. tmpzr1t_l9r_go_relaxed.owl peroxisomal 3-oxoacyl coenzyme A thiolase|sterol carrier protein X-related thiolase activity|oxopristanoyl-CoA thiolase activity|3-oxopristanoyl-CoA hydrolase activity|sterol carrier protein|4,8,12-trimethyltridecanoyl-CoA:propanoyl-CoA C2-4,8,12-trimethyltridecanoyltransferase activity|SCPx|4,8,12-trimethyltridecanoyl-CoA:propanoyl-CoA 2-C-4,8,12-trimethyltridecanoyltransferase activity|3-oxopristanoyl-CoA thiolase activity|propionyl-CoA C(2)-trimethyltridecanoyltransferase activity|peroxisome sterol carrier protein thiolase Reactome:R-HSA-192341|Reactome:R-HSA-2066781|Reactome:R-HSA-390224|EC:2.3.1.176|RHEA:10408|Reactome:R-HSA-193533|KEGG_REACTION:R05330|MetaCyc:2.3.1.154-RXN GO:0004770 molecular_function owl:Class GO:0062137 biolink:NamedThing cargo receptor complex Any protein complex that is part of a membrane and which functions as a cargo receptor. tmpzr1t_l9r_go_relaxed.owl dph 2019-07-08T18:09:01Z cellular_component owl:Class GO:0102752 biolink:NamedThing 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) Catalysis of the reaction: a glucosylated glycogenin = a glycogen. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7669|EC:2.4.1.18 molecular_function owl:Class GO:1903673 biolink:NamedThing mitotic cleavage furrow formation Any cleavage furrow formation that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl cleavage furrow positioning involved in mitotic cell cycle jl 2014-11-27T15:32:18Z biological_process owl:Class GO:0008564 biolink:NamedThing protein-exporting ATPase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein+(in) -> ADP + phosphate + protein+(out); drives the concomitant secretion of proteins. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled protein transporter activity MetaCyc:3.6.3.50-RXN|EC:7.4.2.8 Represents ATP- hydrolyzing enzymes of the general secretory pathway (Sec or Type II), of the virulence-related secretory pathway (Type III) and of the conjugal DNA-protein transfer pathway (Type IV). Type II enzymes occur in bacteria, archaea and eukaryotes, whereas type III and type IV enzymes occur in bacteria where they form components of a multi-subunit complex. molecular_function owl:Class GO:0050404 biolink:NamedThing zeatin O-beta-D-xylosyltransferase activity Catalysis of the reaction: UDP-alpha-D-xylose + zeatin = O-beta-D-xylosylzeatin + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl zeatin O-b-D-xylosyltransferase activity|zeatin O-xylosyltransferase activity|uridine diphosphoxylose-zeatin xylosyltransferase activity|UDP-D-xylose:zeatin O-beta-D-xylosyltransferase activity KEGG_REACTION:R02119|RHEA:14721|MetaCyc:ZEATIN-O-BETA-D-XYLOSYLTRANSFERASE-RXN|EC:2.4.2.40 Note that this function was formerly EC:2.4.1.204. molecular_function owl:Class GO:1901121 biolink:NamedThing tobramycin biosynthetic process The chemical reactions and pathways resulting in the formation of tobramycin. tmpzr1t_l9r_go_relaxed.owl tobramycin formation|tobramycin biosynthesis|tobramycin anabolism|tobramycin synthesis yaf 2012-07-11T03:15:51Z biological_process owl:Class GO:0010128 biolink:NamedThing benzoate catabolic process via CoA ligation The chemical reactions and pathways resulting in the breakdown of benzoate, by its ligation to Coenzyme A to form benzoyl-CoA, which is then broken by an aerobic or anaerobic pathway. tmpzr1t_l9r_go_relaxed.owl anaerobic benzoate catabolic process|anaerobic benzoate breakdown|anaerobic benzoate degradation|anaerobic benzoate catabolism MetaCyc:PWY-283 biological_process owl:Class GO:0055055 biolink:NamedThing D-glucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: D-glucose + H+ = D-glucose + H+. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. D-glucose is the dextrorotatory D-enantiomer of glucose. tmpzr1t_l9r_go_relaxed.owl D-glucose:hydrogen symporter activity molecular_function owl:Class GO:0043700 biolink:NamedThing pterinosome A tissue-specific, membrane-bounded cytoplasmic organelle within which pteridine pigments are synthesized and stored. Pterinosomes are synthesized in xanthophores and erythrophore cells and are yellow, orange or red in appearance. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047845 biolink:NamedThing deoxylimonate A-ring-lactonase activity Catalysis of the reaction: deoxylimonoate + H(2)O = deoxylimononate D-ring-lactone + H(+). tmpzr1t_l9r_go_relaxed.owl deoxylimonate A-ring-lactonohydrolase activity EC:3.1.1.46|KEGG_REACTION:R03803|MetaCyc:DEOXYLIMONATE-A-RING-LACTONASE-RXN|RHEA:14997 molecular_function owl:Class GO:0097680 biolink:NamedThing double-strand break repair via classical nonhomologous end joining An instance of double-strand break repair via nonhomologous end joining that requires a number of factors important for V(D)J recombination, including the KU70/80 heterodimer (KU), XRCC4, ligase IV, and DNA-PKcs in mammals. It does not produce translocations (as opposed to the alternative nonhomologous end joining). tmpzr1t_l9r_go_relaxed.owl C-NHEJ|canonical nonhomologous end joining pr 2014-12-17T15:15:18Z biological_process owl:Class GO:0043822 biolink:NamedThing ribonuclease M5 activity Catalysis of the endonucleolytic cleavage of RNA, removing 21 and 42 nucleotides, respectively, from the 5'- and 3'-termini of a 5S-rRNA precursor. tmpzr1t_l9r_go_relaxed.owl RNase M5 activity|5S ribosomal maturation nuclease activity|5S ribosomal RNA maturation endonuclease activity MetaCyc:3.1.26.8-RXN|EC:3.1.26.8 molecular_function owl:Class GO:0010210 biolink:NamedThing IAA-Phe conjugate hydrolase activity Catalysis of the reaction: indole-3-acetyl-phenylalanine + H2O = indole-3-acetate + phenylalanine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010178 biolink:NamedThing IAA-amino acid conjugate hydrolase activity Catalysis of the cleavage of the amide bond between IAA (auxin) and the conjugated amino acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036183 biolink:NamedThing asperthecin catabolic process The chemical reactions and pathways resulting in the breakdown of asperthecin, an anthraquinone pigment obtained from the mould Aspergillus nidulans. tmpzr1t_l9r_go_relaxed.owl asperthecin catabolism|asperthecin degradation|asperthecin breakdown bf 2012-04-16T11:36:38Z biological_process owl:Class GO:0047099 biolink:NamedThing CDP-4-dehydro-6-deoxyglucose reductase activity Catalysis of the reaction: H2O + NAD(P)+ + CDP-4-dehydro-3,6-dideoxy-D-glucose = NAD(P)H + CDP-4-dehydro-6-deoxy-D-glucose. tmpzr1t_l9r_go_relaxed.owl CDP-4-dehydro-3,6-dideoxy-D-glucose:NAD(P)+ 3-oxidoreductase activity|NAD(P)H:CDP-4-keto-6-deoxy-D-glucose oxidoreductase activity|CDP-4-keto-6-deoxyglucose reductase activity|cytidine diphosphate 4-keto-6-deoxy-D-glucose-3-dehydrogenase activity|cytidine diphospho-4-keto-6-deoxy-D-glucose reductase activity|CDP-4-keto-6-deoxy-D-glucose-3-dehydrogenase system activity|CDP-4-keto-deoxy-glucose reductase activity MetaCyc:1.17.1.1-RXN|EC:1.17.1.1 molecular_function owl:Class GO:0043031 biolink:NamedThing negative regulation of macrophage activation Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of macrophage polarization|down regulation of macrophage activation|down-regulation of macrophage activation|inhibition of macrophage activation|downregulation of macrophage activation biological_process owl:Class GO:0047408 biolink:NamedThing alkenylglycerophosphocholine hydrolase activity Catalysis of the reaction: H2O + 1-(1-alkenyl)-sn-glycero-3-phosphocholine = L-1-glycero-3-phosphocholine + an aldehyde. tmpzr1t_l9r_go_relaxed.owl lysoplasmalogenase activity|1-(1-alkenyl)-sn-glycero-3-phosphocholine aldehydohydrolase activity EC:3.3.2.2|RHEA:22544|MetaCyc:3.3.2.2-RXN molecular_function owl:Class GO:0035802 biolink:NamedThing adrenal cortex formation The process that gives rise to the adrenal cortex. This process pertains to the initial formation of a structure from unspecified parts. The adrenogonadal primordium from which the adrenal cortex is formed derives from a condensation of coelomic epithelial cells (the urogenital ridge; the same structure from which gonads and kidney also originate). tmpzr1t_l9r_go_relaxed.owl adrenal gland cortex formation bf 2011-04-18T10:26:49Z biological_process owl:Class GO:0030749 biolink:NamedThing loganate O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + loganate = S-adenosyl-L-homocysteine + loganin. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:loganic acid methyltransferase activity|loganate methyltransferase activity|S-adenosyl-L-methionine:loganate 11-O-methyltransferase activity MetaCyc:LOGANATE-O-METHYLTRANSFERASE-RXN|EC:2.1.1.50|RHEA:12508 molecular_function owl:Class GO:0102764 biolink:NamedThing 6-deoxotyphasterol C-23 hydroxylase activity Catalysis of the reaction: 6-deoxotyphasterol + O2 + a reduced electron acceptor = 6-deoxocastasterone + H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-777 molecular_function owl:Class GO:0048293 biolink:NamedThing regulation of isotype switching to IgE isotypes Any process that modulates the frequency, rate or extent of isotype switching to IgE isotypes. tmpzr1t_l9r_go_relaxed.owl regulation of class switch recombination to IgE isotypes|regulation of isotype switch recombination to IgE isotypes|regulation of class switching to IgE isotypes biological_process owl:Class GO:1903833 biolink:NamedThing positive regulation of cellular response to amino acid starvation Any process that activates or increases the frequency, rate or extent of cellular response to amino acid starvation. tmpzr1t_l9r_go_relaxed.owl up-regulation of cellular response to amino acid starvation|up regulation of cellular response to amino acid starvation|upregulation of cellular response to amino acid starvation|activation of cellular response to amino acid starvation rn 2015-01-21T18:44:37Z biological_process owl:Class GO:0110108 biolink:NamedThing positive regulation of imaginal disc-derived wing vein specification Any process that activates or increases the frequency, rate or extent of imaginal disc-derived wing vein specification. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-05T13:52:31Z biological_process owl:Class GO:0045756 biolink:NamedThing positive regulation of initiation of acetate catabolic process by acetate Any process that activates or increases the frequency, rate or extent of the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate. tmpzr1t_l9r_go_relaxed.owl positive regulation of initiation of acetate breakdown by acetate|positive regulation of initiation of acetate degradation by acetate|up regulation of initiation of acetate catabolic process by acetate|stimulation of initiation of acetate catabolic process by acetate|activation of initiation of acetate catabolic process by acetate|upregulation of initiation of acetate catabolic process by acetate|up-regulation of initiation of acetate catabolic process by acetate biological_process owl:Class GO:0004526 biolink:NamedThing ribonuclease P activity Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor. tmpzr1t_l9r_go_relaxed.owl RNase P|tRNA 5' leader endonuclease activity MetaCyc:3.1.26.5-RXN|EC:3.1.26.5|Wikipedia:RNase_P|Reactome:R-HSA-5696810 molecular_function owl:Class GO:0010618 biolink:NamedThing aerenchyma formation The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045722 biolink:NamedThing positive regulation of gluconeogenesis Any process that activates or increases the frequency, rate or extent of gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of gluconeogenesis|upregulation of gluconeogenesis|up regulation of gluconeogenesis|stimulation of gluconeogenesis|activation of gluconeogenesis biological_process owl:Class GO:0047895 biolink:NamedThing formaldehyde dismutase activity Catalysis of the reaction: 2 formaldehyde + H2O = methanol + formate. tmpzr1t_l9r_go_relaxed.owl nicotinoprotein aldehyde dismutase|aldehyde dismutase activity|cannizzanase activity|formaldehyde:formaldehyde oxidoreductase activity MetaCyc:FORMALDEHYDE-DISMUTASE-RXN|EC:1.2.98.1|RHEA:19221 molecular_function owl:Class GO:0035650 biolink:NamedThing AP-1 adaptor complex binding Binding to an AP-1 adaptor complex. The AP-1 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C). tmpzr1t_l9r_go_relaxed.owl bf 2011-01-25T10:58:52Z molecular_function owl:Class GO:0061594 biolink:NamedThing 6-deoxy-6-sulfofructose kinase activity Catalysis of the reaction 6-deoxy-6-sulfofructose + ATP = 6-deoxy-6-sulfofructose-1-phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl RHEA:40443|MetaCyc:RXN-15297|EC:2.7.1.184 dph 2014-02-10T09:59:26Z molecular_function owl:Class GO:0070799 biolink:NamedThing regulation of conidiophore stalk development Any process that modulates the frequency, rate or extent of conidiophore stalk development, a process that leads to the formation of a conidiophore stalk. The conidiophore stalk is part of a specialized hypha that extends aerially from the growth substrate and supports structures from which conidia, or asexual spores, develop. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T04:03:40Z biological_process owl:Class GO:0003104 biolink:NamedThing positive regulation of glomerular filtration Any process that activates or increases the frequency, rate or extent of glomerular filtration. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042332 biolink:NamedThing gravitaxis The directed movement of a motile cell or organism in response to gravity. tmpzr1t_l9r_go_relaxed.owl taxis in response to gravitational stimulus|gravitactic behavior|taxis in response to gravity|geotaxis|geotactic behavior|geotactic behaviour|gravitactic behaviour GO:0048062 biological_process owl:Class GO:0033104 biolink:NamedThing type VI protein secretion system complex A complex of proteins that permits the transfer of proteins into the extracellular milieu or directly into host cells via the type VI secretion system. Proteins secreted by this complex do not require an N-terminal signal sequence. tmpzr1t_l9r_go_relaxed.owl T6SS complex cellular_component owl:Class GO:0035464 biolink:NamedThing regulation of transforming growth factor receptor beta signaling pathway involved in determination of left/right asymmetry Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway that is involved in the determination of organismal asymmetry with regard to its left and right halves. tmpzr1t_l9r_go_relaxed.owl regulation of TGF-beta receptor signalling pathway involved in determination of left/right asymmetry|regulation of TGFbeta receptor signalling pathway involved in determination of left/right asymmetry|regulation of transforming growth factor beta receptor signalling pathway involved in determination of left/right asymmetry|regulation of TGFbeta receptor signaling pathway involved in determination of left/right asymmetry|regulation of TGF-beta receptor signaling pathway involved in determination of left/right asymmetry bf 2010-04-19T01:31:56Z biological_process owl:Class GO:0018769 biolink:NamedThing 2-hydroxy-6-oxoocta-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxoocta-2,4-dienoate + H2O = H+ + propanoate + cis-2-hydroxypenta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0311 molecular_function owl:Class GO:0060357 biolink:NamedThing regulation of leucine import Any process that modulates the rate, frequency or extent of leucine import. Leucine import is the directed movement of leucine into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl regulation of L-leucine import|regulation of leucine uptake|regulation of L-leucine uptake biological_process owl:Class GO:0044818 biolink:NamedThing mitotic G2/M transition checkpoint A cell cycle checkpoint that detects and negatively regulates progression from G2 to M phase as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-11-19T14:20:00Z biological_process owl:Class GO:1904842 biolink:NamedThing response to nitroglycerin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitroglycerin stimulus. tmpzr1t_l9r_go_relaxed.owl response to trinitroglycerin|response to nitroglycerine|response to trinitroglycerol|response to nitroglycerol sl 2015-12-07T18:30:47Z biological_process owl:Class GO:0098746 biolink:NamedThing fast, calcium ion-dependent exocytosis of neurotransmitter The fast, initial phase of calcium ion-induced neurotransmitter release, via exocytosis, into the synaptic cleft. This depends on low affinity calcium sensors and typically begins a fraction of a millisecond after Ca2+ influx, and decays rapidly (1-10ms) with a decay constant of around 5-10ms. The underlying molecular mechanisms of this process are distinct from those of the later, slow phase of release. tmpzr1t_l9r_go_relaxed.owl synchronous, calcium ion-dependent exocytosis of neurotransmitter biological_process owl:Class GO:0102785 biolink:NamedThing violaxanthin oxygenase activity Catalysis of the reaction: violaxanthin + 2 O2 = 2 5,6-epoxy-3-hydroxy-9-apo-beta-caroten-9-one + 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7886 molecular_function owl:Class GO:0009135 biolink:NamedThing purine nucleoside diphosphate metabolic process The chemical reactions and pathways involving purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside diphosphate metabolism biological_process owl:Class GO:0046296 biolink:NamedThing glycolate catabolic process The chemical reactions and pathways resulting in the breakdown of glycolate, the anion of hydroxyethanoic acid (glycolic acid). tmpzr1t_l9r_go_relaxed.owl glycolate catabolism|glycolate breakdown|glycolate degradation biological_process owl:Class GO:0047541 biolink:NamedThing 2-furoate-CoA ligase activity Catalysis of the reaction: 2-furoate + ATP + CoA = 2-furoyl-CoA + AMP + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl 2-furoyl coenzyme A synthetase activity|2-furoate:CoA ligase (AMP-forming) MetaCyc:2-FUROATE--COA-LIGASE-RXN|RHEA:19269|EC:6.2.1.31|KEGG_REACTION:R02986 molecular_function owl:Class GO:0098913 biolink:NamedThing membrane depolarization during ventricular cardiac muscle cell action potential The process in which ventricular cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. tmpzr1t_l9r_go_relaxed.owl electrocardiogram QRS complex|ventricular depolarization biological_process owl:Class GO:0051723 biolink:NamedThing protein methylesterase activity Catalysis of the reaction: protein amino acid methyl ester + H2O = protein amino acid + methanol. tmpzr1t_l9r_go_relaxed.owl protein carboxyl methylesterase activity|PME activity|protein carboxylic ester hydrolase activity|protein methyl-esterase activity Reactome:R-HSA-5367022 molecular_function owl:Class GO:0070340 biolink:NamedThing detection of bacterial lipopeptide The series of events in which a bacterial lipopeptide stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090600 biolink:NamedThing alpha-1,3-glucosidase activity Catalysis of the hydrolysis of terminal, non-reducing alpha-(1->3)-linked alpha-D-glucose residues with release of alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-22T15:00:45Z molecular_function owl:Class GO:0042039 biolink:NamedThing vanadium incorporation into metallo-sulfur cluster The incorporation of vanadium a metallo-sulfur cluster such as VFe(7-8)S(n). tmpzr1t_l9r_go_relaxed.owl vanadium incorporation into metallo-sulphur cluster biological_process owl:Class GO:0038171 biolink:NamedThing cannabinoid signaling pathway The series of molecular signals generated as a consequence of a cannabinoid binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. Cannabinoids are a class of diverse chemical compounds that include the endocannabinoids and the phytocannabinoids. tmpzr1t_l9r_go_relaxed.owl cannabinoid receptor signaling pathway|cannabinoid-mediated signaling pathway|cannabinoid-activated signaling pathway bf 2012-06-12T10:47:53Z biological_process owl:Class GO:0003417 biolink:NamedThing growth plate cartilage development The process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T08:57:42Z biological_process owl:Class GO:0035356 biolink:NamedThing cellular triglyceride homeostasis Any process involved in the maintenance of an internal steady state of triglyceride within a cell or between a cell and its external environment. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-05T10:28:11Z biological_process owl:Class GO:0052793 biolink:NamedThing pectin acetylesterase activity Catalysis of the reaction: pectin + H2O = pectate + acetate. This reaction is the hydrolysis of acetyl esters of pectin, producing pectate, partially esterified pectin. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-05T05:17:21Z molecular_function owl:Class GO:0043445 biolink:NamedThing acetone biosynthetic process The chemical reactions and pathways resulting in the formation of acetone, propan-2-one. tmpzr1t_l9r_go_relaxed.owl propan-2-one biosynthetic process|acetone anabolism|dimethyl ketone biosynthesis|2-propanone biosynthetic process|acetone synthesis|acetone biosynthesis|acetone formation|propan-2-one biosynthesis|2-propanone biosynthesis|dimethyl ketone biosynthetic process biological_process owl:Class GO:0005998 biolink:NamedThing xylulose catabolic process The chemical reactions and pathways resulting in the breakdown of xylulose, the ketopentose threo-2-pentulose. tmpzr1t_l9r_go_relaxed.owl xylulose catabolism|xylulose degradation|xylulose breakdown MetaCyc:XYLCAT-PWY biological_process owl:Class GO:0035074 biolink:NamedThing pupation The act of becoming a pupa, a resting stage in the life cycle of organisms with complete metamorphosis. This event marks the end of the prepupal period and the beginning of the pupal period. tmpzr1t_l9r_go_relaxed.owl prepupal-pupal transition|head eversion Wikipedia:Pupa biological_process owl:Class GO:0090451 biolink:NamedThing cotyledon boundary formation The process in which boundaries between a cotyledon and the surrounding tissue are established and maintained. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-19T10:26:54Z biological_process owl:Class GO:0019008 biolink:NamedThing molybdopterin synthase complex A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits. tmpzr1t_l9r_go_relaxed.owl molybdopterin converting factor complex GO:0019009 cellular_component owl:Class GO:0033925 biolink:NamedThing mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity Catalysis of the endohydrolysis of the N,N'-diacetylchitobiosyl unit in high-mannose glycopeptides and glycoproteins containing the -[Man(GlcNAc)2]Asn-structure. One N-acetyl-D-glucosamine residue remains attached to the protein; the rest of the oligosaccharide is released intact. tmpzr1t_l9r_go_relaxed.owl endo-beta-N-acetylglucosaminidase F activity|endo-beta-N-acetylglucosaminidase L activity|endoglycosidase H activity|endo-beta-(1->4)-N-acetylglucosaminidase activity|glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase activity|N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase activity|endo-N-acetyl-beta-glucosaminidase activity|di-N-acetylchitobiosyl beta-N-acetylglucosaminidase activity|endo-beta-acetylglucosaminidase activity|endo-beta-N-acetylglucosaminidase D activity|mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase activity|glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase activity|endo-beta-N-acetylglucosaminidase H activity|endoglycosidase S activity|mannosyl-glycoprotein endo-beta-N-acetylglucosamidase activity|endo-beta-N-acetylglucosaminidase activity|endo-N-acetyl-beta-D-glucosaminidase activity MetaCyc:3.2.1.96-RXN|EC:3.2.1.96|Reactome:R-HSA-8853379 molecular_function owl:Class GO:1901060 biolink:NamedThing p-hydroxyphenyl lignin biosynthetic process The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin. tmpzr1t_l9r_go_relaxed.owl p-hydroxyphenyl lignin anabolism|p-hydroxyphenyl lignin synthesis|H-lignin biosynthetic process|p-hydroxyphenyl lignin formation|p-hydroxyphenyl lignin biosynthesis tt 2012-06-29T02:42:36Z biological_process owl:Class GO:0030070 biolink:NamedThing insulin processing The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901142 biolink:NamedThing insulin metabolic process The chemical reactions and pathways involving insulin. tmpzr1t_l9r_go_relaxed.owl insulin metabolism pm 2012-07-13T12:32:40Z biological_process owl:Class GO:0000033 biolink:NamedThing alpha-1,3-mannosyltransferase activity Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->3) linkage. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-4549368|Reactome:R-HSA-446208|Reactome:R-HSA-446188|Reactome:R-HSA-4720473 molecular_function owl:Class GO:0048864 biolink:NamedThing stem cell development The process whose specific outcome is the progression of the stem cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to its specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047843 biolink:NamedThing dehydrogluconate dehydrogenase activity Catalysis of the reaction: 2-dehydro-D-gluconate + A = 2,5-didehydro-D-gluconate + AH(2). tmpzr1t_l9r_go_relaxed.owl 2-dehydro-D-gluconate:acceptor 2-oxidoreductase activity|ketogluconate dehydrogenase activity|2-keto-D-gluconate dehydrogenase activity|2-oxogluconate dehydrogenase activity|alpha-ketogluconate dehydrogenase activity MetaCyc:DEHYDROGLUCONATE-DEHYDROGENASE-RXN|KEGG_REACTION:R07153|EC:1.1.99.4|RHEA:12368 molecular_function owl:Class GO:0007618 biolink:NamedThing mating The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062058 biolink:NamedThing transcription factor TFIIH holo complex binding Binding to a transcription factor TFIIH holo complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:44:17Z molecular_function owl:Class GO:2001233 biolink:NamedThing regulation of apoptotic signaling pathway Any process that modulates the frequency, rate or extent of apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of apoptotic signalling pathway pr 2011-11-24T01:20:49Z biological_process owl:Class GO:0038088 biolink:NamedThing VEGF-activated platelet-derived growth factor receptor-beta signaling pathway A series of molecular signals initiated by the binding of a vascular endothelial growth factor (VEGF) to a beta-type platelet-derived growth factor receptor (PDGFR) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGF/PDGFRbeta signaling pathway|VEGF-activated PDGFRbeta signalling pathway|VEGF-activated platelet-derived growth factor receptor-beta signalling pathway|vascular endothelial growth factor-activated platelet-derived growth factor receptor-beta signaling pathway|VEGF-A/PDGFRbeta signaling bf 2012-02-01T03:10:16Z biological_process owl:Class GO:0102223 biolink:NamedThing 4,4'-diapophytoene desaturase activity Catalysis of the reaction: 4 H+ + 15-cis-4,4'-diapophytoene + 4 FAD <=> 4,4'-diapolycopene + 4 FADH2. tmpzr1t_l9r_go_relaxed.owl RHEA:31391|EC:1.3.8.2|MetaCyc:RXN-12224 molecular_function owl:Class GO:0034935 biolink:NamedThing tetrachlorobenzene dioxygenase activity Catalysis of the reaction: 2,4-dichlorotoluene + NADH + H+ + O2 = 4,6-dichloro-3-methyl-cis-1,2-dihydroxycyclohexa-3,5-diene + NAD+. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0957 molecular_function owl:Class GO:0071344 biolink:NamedThing diphosphate metabolic process The chemical reactions and pathways involving diphosphate, the anion or salt of diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl pyrophosphate metabolism mah 2009-12-11T01:43:41Z biological_process owl:Class GO:0033930 biolink:NamedThing keratan-sulfate endo-1,4-beta-galactosidase activity Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in keratan sulfate. tmpzr1t_l9r_go_relaxed.owl keratan sulfate endogalactosidase activity|keratan-sulfate 1,4-beta-D-galactanohydrolase activity|keratanase activity|endo-beta-galactosidase activity MetaCyc:3.2.1.103-RXN|EC:3.2.1.103 molecular_function owl:Class GO:0010179 biolink:NamedThing IAA-Ala conjugate hydrolase activity Catalysis of the reaction: indole-3-acetyl-alanine + H2O = indole-3-acetate + L-alanine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2981 molecular_function owl:Class GO:0019770 biolink:NamedThing IgG receptor activity Combining with an immunoglobulin of an IgG isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098038 biolink:NamedThing non-replicative transposition, DNA-mediated Process by which a transposable element is excised from the donor site and integrated at the target site without replication of the element. Also referred to as cut-and-paste transposition. tmpzr1t_l9r_go_relaxed.owl cut-and-paste transposition bm 2012-07-20T16:47:50Z biological_process owl:Class GO:0046783 biolink:NamedThing modification by virus of host polysomes Any viral process that interferes with and inhibits the assembly and function of polysomes. tmpzr1t_l9r_go_relaxed.owl viral perturbation of polysomes See also the cellular component term 'polysome ; GO:0005844'. biological_process owl:Class GO:0034217 biolink:NamedThing ascospore wall chitin biosynthetic process The chemical reactions and pathways resulting in the formation of ascospore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of ascospores. tmpzr1t_l9r_go_relaxed.owl ascospore wall chitin formation|ascospore wall chitin synthesis|ascospore wall chitin anabolism|ascospore wall chitin biosynthesis biological_process owl:Class GO:1905229 biolink:NamedThing cellular response to thyrotropin-releasing hormone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyrotropin-releasing hormone (TRH) stimulus. TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl cellular response to protirelin|cellular response to TRH sl 2016-06-07T16:14:10Z biological_process owl:Class GO:0031931 biolink:NamedThing TORC1 complex A protein complex that contains at least TOR (target of rapamycin) and Raptor (regulatory-associated protein of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of S6K. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p. tmpzr1t_l9r_go_relaxed.owl nutrient sensitive complex|TORC1|mTORC1|TOR complex 1|TORC 1 complex|dTOR/dRaptor complex|dTORC1|rapamycin and nutrient-sensitive TOR complex Wikipedia:MTORC1 cellular_component owl:Class GO:2000767 biolink:NamedThing positive regulation of cytoplasmic translation Any process that activates or increases the frequency, rate or extent of cytoplasmic translation. tmpzr1t_l9r_go_relaxed.owl vw 2011-06-20T10:39:26Z biological_process owl:Class GO:0106267 biolink:NamedThing 3,5 dichloro-THPH synthase activity Catalysis of the reaction: (3-chloro-2,4,6-trihydroxyphenyl)hexan-1-one + chloride + FADH2 + O2 = (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one + FAD + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:64360 hjd 2020-06-02T18:16:23Z molecular_function owl:Class GO:0043230 biolink:NamedThing extracellular organelle Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033461 biolink:NamedThing GGU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GGU codon. tmpzr1t_l9r_go_relaxed.owl glycine tRNA|GGT codon-amino acid adaptor activity Note that in the standard genetic code, GGT codes for glycine. molecular_function owl:Class GO:1905265 biolink:NamedThing blasticidin S catabolic process The chemical reactions and pathways resulting in the breakdown of blasticidin S. tmpzr1t_l9r_go_relaxed.owl blasticidin S breakdown|blasticidin S degradation|blasticidin S catabolism pr 2016-06-14T12:47:13Z biological_process owl:Class GO:0003044 biolink:NamedThing regulation of systemic arterial blood pressure mediated by a chemical signal The regulation of blood pressure mediated by biochemical signaling: hormonal, autocrine or paracrine. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation mediated by a chemical signal biological_process owl:Class GO:1905197 biolink:NamedThing endocannabinoid signaling pathway involved in retrograde trans-synaptic signaling Any endocannabinoid signaling pathway that is involved in retrograde trans-synaptic signaling by endocannabinoid. tmpzr1t_l9r_go_relaxed.owl endocannabinoid signalling pathway involved in retrograde trans-synaptic signaling by endocannabinoid dos 2016-05-12T14:29:38Z biological_process owl:Class GO:0007307 biolink:NamedThing eggshell chorion gene amplification Amplification by up to 60-fold of the loci containing the chorion gene clusters. Amplification is necessary for the rapid synthesis of chorion proteins by the follicle cells, and occurs by repeated firing of one or more origins located within each gene cluster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009035 biolink:NamedThing type I site-specific deoxyribonuclease activity Catalysis of the endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5' or 3' protrusions, driven by ATP hydrolysis. Cleavage is dependent on the presence in the DNA of a specific recognition site. Cleavage may occur hundreds or thousands of base pairs away from the recognition site due to translocation of DNA. tmpzr1t_l9r_go_relaxed.owl adenosine triphosphate-dependent deoxyribonuclease activity|type I restriction enzyme activity|ATP-dependent DNase activity|deoxyribonuclease (adenosine triphosphate-hydrolyzing)|deoxyribonuclease (ATP- and S-adenosyl-L-methionine-dependent) https://github.com/geneontology/go-ontology/issues/21612 EC:3.1.21.3|MetaCyc:3.1.21.3-RXN molecular_function owl:Class GO:0003299 biolink:NamedThing muscle hypertrophy in response to stress The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells as a result of a disturbance in organismal or cellular homeostasis. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T09:26:10Z biological_process owl:Class GO:0016595 biolink:NamedThing glutamate binding Binding to glutamate, the anion of 2-aminopentanedioic acid. tmpzr1t_l9r_go_relaxed.owl glutamic acid binding molecular_function owl:Class GO:0051384 biolink:NamedThing response to glucocorticoid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects. tmpzr1t_l9r_go_relaxed.owl response to glucocorticoid stimulus biological_process owl:Class GO:0070349 biolink:NamedThing positive regulation of brown fat cell proliferation Any process that activates or increases the rate or extent of brown fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of brown fat cell proliferation|positive regulation of brown adipocyte proliferation|activation of brown fat cell proliferation|stimulation of brown fat cell proliferation|positive regulation of brown adipose cell proliferation|upregulation of brown fat cell proliferation|up-regulation of brown fat cell proliferation biological_process owl:Class GO:0035024 biolink:NamedThing negative regulation of Rho protein signal transduction Any process that stops, prevents, or reduces the frequency, rate or extent of Rho protein signal transduction. tmpzr1t_l9r_go_relaxed.owl down-regulation of Rho protein signal transduction|downregulation of Rho protein signal transduction|down regulation of Rho protein signal transduction|inhibition of Rho protein signal transduction biological_process owl:Class GO:0062130 biolink:NamedThing adhesive extracellular matrix A extracellular matrix which attaches an organism to a substrate. tmpzr1t_l9r_go_relaxed.owl puparial glue dph 2019-06-21T12:35:06Z cellular_component owl:Class GO:0009703 biolink:NamedThing nitrate reductase (NADH) activity Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NADH:nitrate oxidoreductase activity|nitrate reductase (NADH2)|nitrite:NAD+ oxidoreductase activity|NADH-nitrate reductase activity|NADH-dependent nitrate reductase activity|assimilatory NADH: nitrate reductase activity|assimilatory NADH:nitrate reductase activity|NADH:nitrate reductase activity|nitrate reductase (NADH(2)) activity|assimilatory nitrate reductase activity EC:1.7.1.1|MetaCyc:NITRATE-REDUCTASE-NADH-RXN|RHEA:17913 Note that this function was formerly EC:1.6.6.1. molecular_function owl:Class GO:0019518 biolink:NamedThing L-threonine catabolic process to glycine The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form to form 2-amino-3-oxobutanoate, which is subsequently converted to glycine. tmpzr1t_l9r_go_relaxed.owl L-threonine catabolic process to pyruvate|L-threonine degradation to glycine|L-threonine catabolism to glycine|threonine catabolic process to glycine|L-threonine breakdown to glycine MetaCyc:THREONINE-DEG2-PWY biological_process owl:Class GO:0071282 biolink:NamedThing cellular response to iron(II) ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to iron(II) mah 2009-12-10T03:57:49Z biological_process owl:Class GO:2001312 biolink:NamedThing lysobisphosphatidic acid biosynthetic process The chemical reactions and pathways resulting in the formation of a lysobisphosphatidic acid. A lysobisphosphatidic acid is a lysophosphatidic acid having the unusual property of a phosphodiester moiety linked to positions sn-1 and sn1' of glycerol; and two additional fatty acids esterified to the glycerol head group. tmpzr1t_l9r_go_relaxed.owl LBPA synthesis|bis(monoacylglycerol) hydrogen phosphate (BMP) biosynthetic process|lysobisphosphatidic acid biosynthesis|bis(monoacylglycerol) hydrogen phosphate biosynthetic process|bis(monoacylglycerol) hydrogen phosphate formation|lysobisphosphatidic acid formation|bis(monoacylglycerol) hydrogen phosphate (BMP) anabolism|bis(monoacylglycerol) hydrogen phosphate biosynthesis|LBPA biosynthesis|bis(monoacylglycerol) hydrogen phosphate anabolism|LBPA biosynthetic process|LBPA formation|bis(monoacylglycerol) hydrogen phosphate (BMP) synthesis|bis(monoacylglycerol) hydrogen phosphate (BMP) formation|bis(monoacylglycerol) hydrogen phosphate (BMP) biosynthesis|bis(monoacylglycerol) hydrogen phosphate synthesis|lysobisphosphatidic acid anabolism|LBPA anabolism|lysobisphosphatidic acid synthesis bf 2012-03-16T09:31:31Z biological_process owl:Class GO:0031831 biolink:NamedThing type 5B serotonin receptor binding Binding to a type 5B serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 5B serotonin receptor ligand|5-hydroxytryptamine 5B receptor binding molecular_function owl:Class GO:0016150 biolink:NamedThing translation release factor activity, codon nonspecific A translation release factor that is not specific to particular codons; binds to guanine nucleotides. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008079 biolink:NamedThing translation termination factor activity Functions in the termination of translation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046010 biolink:NamedThing positive regulation of circadian sleep/wake cycle, non-REM sleep Any process that activates or increases the duration or quality of non-rapid eye movement (NREM) sleep. tmpzr1t_l9r_go_relaxed.owl up-regulation of circadian sleep/wake cycle, non-REM sleep|stimulation of circadian sleep/wake cycle, non-REM sleep|upregulation of circadian sleep/wake cycle, non-REM sleep|activation of circadian sleep/wake cycle, non-REM sleep|up regulation of circadian sleep/wake cycle, non-REM sleep|positive regulation of non-REM sleep biological_process owl:Class GO:0015773 biolink:NamedThing raffinose transport The directed movement of raffinose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Raffinose occurs in plants almost as commonly as sucrose and is present in cereal grains, cotton seeds, and many legumes. It is synthesized from sucrose by transfer of a galactopyranoside from myo-inositol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050451 biolink:NamedThing CoA-disulfide reductase activity Catalysis of the reaction: 2 CoA + NAD+ = CoA-disulfide + NADH + H+. tmpzr1t_l9r_go_relaxed.owl CoA:NAD+ oxidoreductase activity|CoADR activity|CoA-disulfide reductase (NADH) activity|coenzyme A disulfide reductase activity|NADH:CoA-disulfide oxidoreductase activity|CoA-disulfide reductase [NAD(P)H]|CoA-disulfide reductase (NADH2)|CoA-disulphide reductase activity|CoA:NAD(P)+ oxidoreductase activity|NADH2:CoA-disulfide oxidoreductase activity|CoA-disulfide reductase (NAD(P)H) activity MetaCyc:COA-DISULFIDE-REDUCTASE-NADH-RXN|EC:1.8.1.14|RHEA:14705 molecular_function owl:Class GO:0021613 biolink:NamedThing facial nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the facial nerve to attain its fully functional state. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl CN VII maturation biological_process owl:Class GO:0000176 biolink:NamedThing nuclear exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. tmpzr1t_l9r_go_relaxed.owl eukaryotic exosome multienzyme ribonuclease complex|nuclear exosome multienzyme ribonuclease complex|nuclear exosome (ribonuclease complex) cellular_component owl:Class GO:0031393 biolink:NamedThing negative regulation of prostaglandin biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin. tmpzr1t_l9r_go_relaxed.owl negative regulation of prostaglandin biosynthesis|downregulation of prostaglandin biosynthetic process|down-regulation of prostaglandin biosynthetic process|down regulation of prostaglandin biosynthetic process|negative regulation of prostaglandin formation|inhibition of prostaglandin biosynthetic process|negative regulation of prostaglandin anabolism|negative regulation of prostaglandin synthesis biological_process owl:Class GO:0050784 biolink:NamedThing cocaine catabolic process The chemical reactions and pathways resulting in the breakdown of cocaine, an alkaloid obtained from the dried leaves of the shrub Erythroxylon coca. It is a cerebral stimulant and narcotic. tmpzr1t_l9r_go_relaxed.owl cocaine catabolism|cocaine degradation|cocaine breakdown biological_process owl:Class GO:0071648 biolink:NamedThing positive regulation of macrophage inflammatory protein-1 gamma production Any process that activates or increases the frequency, rate, or extent of production of macrophage inflammatory protein-1 gamma. tmpzr1t_l9r_go_relaxed.owl positive regulation of CCL9 production|positive regulation of chemokine (C-C motif) ligand 9 production|positive regulation of MIP-1g production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0050119 biolink:NamedThing N-acetylglucosamine deacetylase activity Catalysis of the reaction: N-acetyl-D-glucosamine + H(2)O = D-glucosamine + acetate. tmpzr1t_l9r_go_relaxed.owl N-acetyl-D-glucosamine amidohydrolase activity|acetylaminodeoxyglucose acetylhydrolase activity|N-acetyl-D-glucosaminyl N-deacetylase activity MetaCyc:N-ACETYLGLUCOSAMINE-DEACETYLASE-RXN|KEGG_REACTION:R01200|RHEA:20593|EC:3.5.1.33|Reactome:R-HSA-2022887 molecular_function owl:Class GO:0036374 biolink:NamedThing glutathione hydrolase activity Catalysis of the reaction: glutathione + H2O = L-cysteinylglycine + L-glutamate. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyltranspeptidase activity|glutathionase activity Reactome:R-HSA-9026916|MetaCyc:RXN-12618|Reactome:R-HSA-5602984|Reactome:R-HSA-9026927|Reactome:R-HSA-9026757|Reactome:R-HSA-9026907|RHEA:28807|EC:3.4.19.13|Reactome:R-HSA-266046|Reactome:R-HSA-5433072|Reactome:R-HSA-9035966|Reactome:R-HSA-8943279|Reactome:R-HSA-1222712|Reactome:R-HSA-9026912|KEGG_REACTION:R00494 bf 2013-05-07T09:58:07Z molecular_function owl:Class GO:0097489 biolink:NamedThing multivesicular body, internal vesicle lumen The volume enclosed by the membrane of the multivesicular body internal vesicle. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-08T20:38:36Z cellular_component owl:Class GO:0102487 biolink:NamedThing dUTP phosphohydrolase activity Catalysis of the reaction: dUTP + 2 H2O = dUMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.5|MetaCyc:RXN-14199 molecular_function owl:Class GO:0042038 biolink:NamedThing peptidyl-histidine methylation, to form tele-methylhistidine The methylation of peptidyl-L-histidine to form peptidyl-L-1'-methyl-L-histidine (otherwise known as tau-methylhistidine, tele-methylhistidine). tmpzr1t_l9r_go_relaxed.owl peptidyl-histidine tele-methylation RESID:AA0317 GO:0042261 biological_process owl:Class GO:0018021 biolink:NamedThing peptidyl-histidine methylation The methylation of peptidyl-L-histidine to form peptidyl-L-1'-methyl-L-histidine (otherwise known as tau-methylhistidine, tele-methylhistidine) or peptidyl-L-3'-methyl-L-histidine (otherwise known as pi-methylhistidine, pros-methylhistidine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0317|RESID:AA0073 biological_process owl:Class GO:1904274 biolink:NamedThing tricellular tight junction assembly The aggregation, arrangement and bonding together of a set of components to form a tricellular tight junction. tmpzr1t_l9r_go_relaxed.owl tricellular tight junction formation mr 2015-05-29T16:31:00Z biological_process owl:Class GO:0004461 biolink:NamedThing lactose synthase activity Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose. tmpzr1t_l9r_go_relaxed.owl uridine diphosphogalactose-glucose galactosyltransferase activity|UDPgalactose:D-glucose 4-beta-D-galactotransferase activity|UDPgalactose-glucose galactosyltransferase activity|UDP-galactose:D-glucose 4-beta-D-galactotransferase activity|UDP-galactose-glucose galactosyltransferase activity|lactose synthetase activity MetaCyc:LACTOSE-SYNTHASE-RXN|EC:2.4.1.22|RHEA:12404|Reactome:R-HSA-5653878 molecular_function owl:Class GO:0075258 biolink:NamedThing negative regulation of teliospore formation Any process that stops, prevents, or reduces the frequency, rate or extent of teliospore formation, which is the formation of a thick-walled resting or overwintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990209 biolink:NamedThing negative regulation by symbiont of RNA levels in host Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the RNA levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-09T18:09:33Z biological_process owl:Class GO:1900816 biolink:NamedThing ochratoxin A metabolic process The chemical reactions and pathways involving ochratoxin A. tmpzr1t_l9r_go_relaxed.owl Ochratoxin A metabolism di 2012-06-04T10:13:02Z biological_process owl:Class GO:0072392 biolink:NamedThing phenol catabolic process The chemical reactions and pathways resulting in the breakdown of phenol, a compound that consists of a benzene ring with one attached hydroxyl group. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-06T04:08:44Z biological_process owl:Class GO:0102685 biolink:NamedThing UDP-glucose:trans-zeatin 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + trans-zeatin <=> H+ + trans-zeatin-7-N-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4721 molecular_function owl:Class GO:0052601 biolink:NamedThing (S)-limonene 1,2-monooxygenase activity Catalysis of the reaction: (4S)-limonene + NAD(P)H + H+ + O2 = NAD(P)+ + H2O + (4S)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl (S)-limonene,NAD(P)H:oxygen oxidoreductase activity|(-)-limonene,NAD(P)H:oxygen oxidoreductase activity|(-)-limonene 1,2-monooxygenase activity KEGG_REACTION:R09385|EC:1.14.13.107|MetaCyc:RXN-9409|KEGG_REACTION:R09389 molecular_function owl:Class GO:0098963 biolink:NamedThing dendritic transport of messenger ribonucleoprotein complex The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites. tmpzr1t_l9r_go_relaxed.owl dendritic transport of mRNA RNP complex biological_process owl:Class GO:0044225 biolink:NamedThing apical pole of neuron Portion of a neuron cell soma closest to the point where the apical dendrite emerges. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1186862860 jl 2009-11-13T03:49:14Z cellular_component owl:Class GO:0097749 biolink:NamedThing membrane tubulation A membrane organization process resulting in the formation of a tubular projection. This may face inwardly (as in tubular membrane invaginations) or outwardly (as in endosomal tubules). tmpzr1t_l9r_go_relaxed.owl pr 2016-12-21T12:32:24Z biological_process owl:Class GO:0033654 biolink:NamedThing host cell chloroplast thylakoid membrane Any sac-like membranous structures (cisternae) in a chloroplast found in host cells, combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030046 biolink:NamedThing parallel actin filament bundle assembly Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030772 biolink:NamedThing tryptophan 2-C-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + L-tryptophan = S-adenosyl-L-homocysteine + L-2-methyltryptophan + H(+). tmpzr1t_l9r_go_relaxed.owl tryptophan 2-methyltransferase activity|S-adenosylmethionine:tryptophan 2-methyltransferase activity|S-adenosyl-L-methionine:L-tryptophan 2-C-methyltransferase activity EC:2.1.1.106|MetaCyc:TRYPTOPHAN-2-C-METHYLTRANSFERASE-RXN|RHEA:17321|KEGG_REACTION:R08547 molecular_function owl:Class GO:0051540 biolink:NamedThing metal cluster binding Binding to a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090165 biolink:NamedThing regulation of secretion by asymmetric Golgi ribbon formation The asymmetric formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae that modulates the controlled release of a substance from a polarized epithelial cell. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T09:05:16Z biological_process owl:Class GO:1905580 biolink:NamedThing positive regulation of ERBB3 signaling pathway Any process that activates or increases the frequency, rate or extent of ERBB3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl upregulation of ERBB3 signaling pathway|activation of ERBB3 signalling pathway|upregulation of HER3 signaling pathway|up regulation of HER3 signaling pathway|positive regulation of HER3 signaling pathway|up-regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|up regulation of ERBB3 signalling pathway|activation of HER3 signaling pathway|upregulation of ERBB3 signalling pathway|up-regulation of ERBB3 signaling pathway|up-regulation of ERBB3 signalling pathway|positive regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|up-regulation of HER3 signaling pathway|activation of ERBB3 signaling pathway|positive regulation of ERBB3 signalling pathway|activation of receptor tyrosine-protein kinase erbB-3 signaling pathway|up regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|upregulation of receptor tyrosine-protein kinase erbB-3 signaling pathway|up regulation of ERBB3 signaling pathway als 2016-10-19T11:47:11Z biological_process owl:Class GO:0047514 biolink:NamedThing 1,3-beta-D-glucan phosphorylase activity Catalysis of the reaction: [(1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate; substrates include laminarin. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-glucan:orthophosphate glucosyltransferase activity|laminarin phosphorylase activity|1,3-beta-D-glucan:phosphate alpha-D-glucosyltransferase activity|1,3-beta-glucan phosphorylase activity|laminarin phosphoryltransferase activity MetaCyc:13-BETA-GLUCAN-PHOSPHORYLASE-RXN|EC:2.4.1.97 molecular_function owl:Class GO:0009368 biolink:NamedThing endopeptidase Clp complex A protein complex comprised of members of the ClpX, ClpC, ClpD, ClpP or ClpR protein families. ClpPs are the proteolytic subunit of active complexes, and ClpA and ClpX form the regulatory subunits. Enzymatically active and inactive complexes can form. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990594 biolink:NamedThing L-altrarate dehydratase activity Catalysis of the reaction: L-altrarate = 5-dehydro-4-deoxy-D-glucarate + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-talarate dehydratase activity RHEA:44028 jl 2014-12-16T14:23:55Z molecular_function owl:Class GO:0000250 biolink:NamedThing lanosterol synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = lanosterol. This is a cyclization reaction that forms the sterol nucleus. tmpzr1t_l9r_go_relaxed.owl 2,3-oxidosqualene-lanosterol cyclase activity|lanosterol 2,3-oxidosqualene cyclase activity|2,3-epoxysqualene lanosterol cyclase activity|(S)-2,3-epoxysqualene mutase (cyclizing, lanosterol-forming)|oxidosqualene--lanosterol cyclase activity|2,3-epoxysqualene-lanosterol cyclase activity|2,3-oxidosqualene sterol cyclase activity|oxidosqualene:lanosterol cyclase activity|oxidosqualene-lanosterol cyclase activity|OSC|squalene epoxidase-cyclase activity|2,3-epoxysqualene--lanosterol cyclase activity|squalene 2,3-epoxide:lanosterol cyclase activity|squalene-2,3-oxide-lanosterol cyclase activity KEGG_REACTION:R03199|MetaCyc:LANOSTEROL-SYNTHASE-RXN|RHEA:14621|EC:5.4.99.7|Reactome:R-HSA-191366 molecular_function owl:Class GO:0035267 biolink:NamedThing NuA4 histone acetyltransferase complex A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). tmpzr1t_l9r_go_relaxed.owl TIP60 histone acetyltransferase complex|TIP60 histone acetylase complex cellular_component owl:Class GO:0043710 biolink:NamedThing cell adhesion involved in multi-species biofilm formation The attachment of a cell to a solid substrate, via cell adhesion molecules, contributing to the formation of a biofilm composed of microorganisms of different species. tmpzr1t_l9r_go_relaxed.owl cell adhesion during multi-species biofilm formation biological_process owl:Class GO:1902194 biolink:NamedThing 2-methylbut-2-enoyl-CoA(4-) biosynthetic process The chemical reactions and pathways resulting in the formation of 2-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbut-2-enoyl-CoA(4-) biosynthesis|2-methylbut-2-enoyl-CoA(4-) anabolism|2-methylbut-2-enoyl-CoA(4-) synthesis|2-methylbut-2-enoyl-CoA(4-) formation ms 2013-06-06T09:40:46Z biological_process owl:Class GO:0009138 biolink:NamedThing pyrimidine nucleoside diphosphate metabolic process The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl pyrimidine nucleoside diphosphate metabolism biological_process owl:Class GO:1990464 biolink:NamedThing D-2-hydroxyacid dehydrogenase (quinone) activity Catalysis of the reaction: (R)-2-hydroxyacid + a quinone = 2-oxoacid + a quinol. tmpzr1t_l9r_go_relaxed.owl (R)-2-hydroxyacid:quinone oxidoreductase activity|(R)-2-hydroxy acid dehydrogenase activity|D-lactate dehydrogenase activity|D-lactate:quinone oxidoreductase activity|(R)-2-hydroxy-acid:(acceptor) 2-oxidoreductase activity|D-lactate dehydrogenase (quinone) activity (R)-lactate, (R)-malate and meso-tartrate are good substrates. Ubiquinone-1 and the dye 2,6-dichloroindophenol can act as acceptors; NAD+ and NADP+ are not acceptors. pr 2014-08-22T10:13:42Z molecular_function owl:Class GO:0140367 biolink:NamedThing antibacterial innate immune response An defense response against a bacteria mediated through an innate immune response. An innate immune response is mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl pg 2019-09-09T11:02:47Z biological_process owl:Class GO:1900523 biolink:NamedThing positive regulation of response to amylopectin Any process that activates or increases the frequency, rate or extent of response to amylopectin. tmpzr1t_l9r_go_relaxed.owl up-regulation of response to amylopectin|upregulation of response to amylopectin|activation of response to amylopectin|up regulation of response to amylopectin tt 2012-05-02T04:14:11Z biological_process owl:Class GO:0150166 biolink:NamedThing regulation of histone H3-K4 acetylation Any process that modulates the frequency, rate or extent of histone H3-K4 acetylation. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:27:26Z biological_process owl:Class GO:1900383 biolink:NamedThing regulation of synaptic plasticity by receptor localization to synapse Any process that modulates synaptic plasticity, the ability of synapses to change as circumstances require, via receptor localization to the synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell. Processes may include receptor transport to, and/or maintenance at, the synapse. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic plasticity by receptor localisation to synapse kmv 2012-04-17T04:44:37Z biological_process owl:Class GO:0001001 biolink:NamedThing mitochondrial single-subunit type RNA polymerase binding Binding to a single subunit mitochondrial RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. tmpzr1t_l9r_go_relaxed.owl krc 2010-08-17T05:01:28Z molecular_function owl:Class GO:0034070 biolink:NamedThing aminoglycoside 1-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 1-N-acetylaminoglycoside. This is acetylation of the 1-amino group of the central deoxystreptamine ring. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034069 biolink:NamedThing aminoglycoside N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + N-acetylaminoglycoside. tmpzr1t_l9r_go_relaxed.owl kanamycin acetyltransferase activity molecular_function owl:Class GO:0031764 biolink:NamedThing type 1 galanin receptor binding Binding to a type 1 galanin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 galanin receptor ligand molecular_function owl:Class GO:1903709 biolink:NamedThing uterine gland development The process whose specific outcome is the progression of an uterine gland over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl uterine glands set development|glandulae uterinae development|uterine glands development|set of uterine glands development|endometrium gland development|endometrial gland development|glandular part of endometrium development cls 2014-12-04T18:57:21Z biological_process owl:Class GO:0016229 biolink:NamedThing steroid dehydrogenase activity Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051585 biolink:NamedThing negative regulation of dopamine uptake involved in synaptic transmission Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of dopamine into a presynaptic neuron or glial cell. tmpzr1t_l9r_go_relaxed.owl down regulation of dopamine uptake involved in synaptic transmission|down-regulation of dopamine uptake involved in synaptic transmission|downregulation of dopamine uptake involved in synaptic transmission|negative regulation of dopamine import involved in synaptic transmission biological_process owl:Class GO:0005385 biolink:NamedThing zinc ion transmembrane transporter activity Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl cobalt, zinc uptake permease activity|zinc, iron permease activity|zinc, cadmium uptake permease activity|zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity RHEA:29351|Reactome:R-HSA-442393|Reactome:R-HSA-435375|Reactome:R-HSA-437084|Reactome:R-HSA-442422|Reactome:R-HSA-442405|Reactome:R-HSA-437136|Reactome:R-HSA-435366|Reactome:R-HSA-5654125|Reactome:R-HSA-442345|Reactome:R-HSA-442317|Reactome:R-HSA-442387|Reactome:R-HSA-437085|Reactome:R-HSA-437129|Reactome:R-HSA-437139 molecular_function owl:Class GO:0039644 biolink:NamedThing suppression by virus of host NF-kappaB cascade Any process in which a virus stops, prevents, or reduces a host NF-kappaB cascade. tmpzr1t_l9r_go_relaxed.owl inhibition of host NF-kappa-B by virus|suppression by virus of host NF-kappaB transcription factor activity bf 2012-10-09T15:04:27Z biological_process owl:Class GO:0002055 biolink:NamedThing adenine binding Binding to adenine, a purine base. tmpzr1t_l9r_go_relaxed.owl 6-aminopurine binding molecular_function owl:Class GO:0009444 biolink:NamedThing pyruvate oxidation The chemical reactions and pathways resulting in the conversion of pyruvate to acetylphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PYRUVOX-PWY|Wikipedia:Pyruvate_decarboxylation biological_process owl:Class GO:0031839 biolink:NamedThing type 1 neuromedin U receptor binding Binding to a type 1 neuromedin U receptor. tmpzr1t_l9r_go_relaxed.owl type 1 neuromedin U receptor ligand molecular_function owl:Class GO:0042922 biolink:NamedThing neuromedin U receptor binding Binding to one or more specific sites on a neuromedin U receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047055 biolink:NamedThing salutaridine synthase activity Catalysis of the reaction: (R)-reticuline + [reduced NADPH--hemoprotein reductase] + O2 -> salutaridine + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl (R)-reticuline oxidase (C-C phenol-coupling) activity https://github.com/geneontology/go-ontology/issues/21133 MetaCyc:1.1.3.35-RXN|EC:1.14.19.67|KEGG_REACTION:R04696|RHEA:17713 molecular_function owl:Class GO:0019503 biolink:NamedThing stachydrine biosynthetic process The chemical reactions and pathways resulting in the formation of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline. tmpzr1t_l9r_go_relaxed.owl stachydrine formation|stachydrine synthesis|stachydrine anabolism|stachydrine biosynthesis biological_process owl:Class GO:0102917 biolink:NamedThing (S)-reticuline 7-O-methyltransferase activity Catalysis of the reaction: (S)-reticulinium(1+) + S-adenosyl-L-methionine <=> H+ + laudanine(1+) + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8700|EC:2.1.1.291|RHEA:10444 molecular_function owl:Class GO:0070086 biolink:NamedThing ubiquitin-dependent endocytosis Endocytosis of a protein that requires the substrate to be modified by ubiquitination. Several plasma membrane proteins, including cell surface permeases and some receptors, are targeted for internalization by endocytosis, and are thereafter delivered to the vacuole or lysosome, where they are degraded. tmpzr1t_l9r_go_relaxed.owl ubiquitin-mediated endocytosis biological_process owl:Class GO:0043831 biolink:NamedThing thiosulfate dehydrogenase (quinone) activity Catalysis of the reaction: 6-decylubiquinone + 2 thiosulfate = 6-decylubiquinol + tetrathionate. tmpzr1t_l9r_go_relaxed.owl DoxD|thiosulphate:quinone oxidoreductase activity|thiosulfate:quinone oxidoreductase activity|DoxA|thiosulphate dehydrogenase (quinone) activity|TQO|thiosulfate:6-decylubiquinone oxidoreductase activity|thiosulfate oxidoreductase, tetrathionate-forming activity KEGG_REACTION:R07177|MetaCyc:1.8.5.2-RXN|RHEA:10936|EC:1.8.5.2 molecular_function owl:Class GO:0016672 biolink:NamedThing oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces quinone or a related compound. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, quinone or similar compound as acceptor EC:1.8.5.- molecular_function owl:Class GO:0061750 biolink:NamedThing acid sphingomyelin phosphodiesterase activity Catalysis of the reaction: H(2)O + sphingomyelin = ceramide + choline phosphate + H(+) in an acidic environment. tmpzr1t_l9r_go_relaxed.owl acid SMase|acid sphingomyelinase dph 2015-11-11T14:47:45Z molecular_function owl:Class GO:0047966 biolink:NamedThing glycosulfatase activity Catalysis of the reaction: D-glucose 6-sulfate + H(2)O = D-glucose + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl glucosulfatase activity|glycosulphatase activity|sugar-sulfate sulfohydrolase activity RHEA:19145|MetaCyc:GLYCOSULFATASE-RXN|EC:3.1.6.3|KEGG_REACTION:R00534 molecular_function owl:Class GO:0039687 biolink:NamedThing viral DNA strand displacement replication A viral DNA replication process where only one strand is replicated at once, and which releases a single stranded DNA (ssDNA). tmpzr1t_l9r_go_relaxed.owl VZ:1940 bf 2013-10-17T14:48:40Z biological_process owl:Class GO:0045170 biolink:NamedThing spectrosome A germline specific spherical organelle, rich in membrane skeletal proteins. Precursor to the fusome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102505 biolink:NamedThing apigeninidin 5-O-glucosyltransferase activity Catalysis of the reaction: apigeninidin + UDP-alpha-D-glucose <=> apigeninidin 5-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14427 molecular_function owl:Class GO:0071278 biolink:NamedThing cellular response to cesium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cesium stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to cesium mah 2009-12-10T03:55:44Z biological_process owl:Class GO:0099613 biolink:NamedThing protein localization to cell wall The process of directing proteins towards the cell-wall. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052381 biolink:NamedThing tRNA dimethylallyltransferase activity Catalysis of the reaction: dimethylallyl diphosphate + tRNA = diphosphate + tRNA containing 6-dimethylallyladenosine. tmpzr1t_l9r_go_relaxed.owl tRNA prenyltransferase activity|tRNA isopentenyltransferase activity|dimethylallyl-diphosphate:tRNA dimethylallyltransferase activity Reactome:R-HSA-6784462|Reactome:R-HSA-6787567|EC:2.5.1.75|MetaCyc:RXN0-6274|RHEA:26482 Note that this activity was formerly know in GO and EC as 'tRNA isopentenyltransferase' (EC:2.5.1.8, GO:0004811), but it is now known that dimethylallyl diphosphate, rather than isopentenyl diphosphate, is the substrate. 2010-07-23T03:07:33Z GO:0004811 molecular_function owl:Class GO:1902515 biolink:NamedThing thioredoxin-disulfide reductase complex A protein complex which is capable of thioredoxin-disulfide reductase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is thioredoxin reductase (TrxB) in E. coli [P0A9P4] in PMID:10947986. bhm 2013-11-26T11:43:38Z cellular_component owl:Class GO:0102459 biolink:NamedThing 8-oxo-deoxyadenine diphosphate phosphatase activity Catalysis of the reaction: 8-oxo-dADP + H2O = 8-oxo-dAMP + hydrogenphosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14005 molecular_function owl:Class GO:0008728 biolink:NamedThing GTP diphosphokinase activity Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl ppGpp synthetase I activity|(p)ppGpp synthetase I|ATP-GTP 3'-diphosphotransferase activity|guanosine 3',5'-polyphosphate synthase activity|GPSII|stringent factor activity|guanosine 5',3'-polyphosphate synthetase activity|GTP pyrophosphokinase activity|ATP:GTP 3'-diphosphotransferase activity|(p)ppGpp synthetase II|GPSI|guanosine pentaphosphate synthetase activity MetaCyc:GTPPYPHOSKIN-RXN|EC:2.7.6.5|RHEA:22088 molecular_function owl:Class GO:0097419 biolink:NamedThing Pick body Cellular inclusion composed of numerous tau fibrils arranged in a disorderly array. Tau protein is a major component, though Pick bodies also contain ubiquitin, alpha-synuclein, and apolipoprotein E. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_20090102 pr 2012-11-06T20:57:02Z cellular_component owl:Class GO:0019367 biolink:NamedThing fatty acid elongation, saturated fatty acid Elongation of a saturated fatty acid chain. tmpzr1t_l9r_go_relaxed.owl MetaCyc:FASYN-ELONG-PWY biological_process owl:Class GO:0051519 biolink:NamedThing activation of bipolar cell growth Any process that initiates the inactive process of bipolar cell growth, polarized growth from both ends of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015520 biolink:NamedThing tetracycline:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out). tmpzr1t_l9r_go_relaxed.owl tetracycline:hydrogen antiporter activity|tetracyclin:hydrogen antiporter activity|tetracyclin:proton antiporter activity molecular_function owl:Class GO:0017099 biolink:NamedThing very-long-chain-acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very long-chain-acyl-CoA dehydrogenase activity Reactome:R-HSA-548831 molecular_function owl:Class GO:0004466 biolink:NamedThing long-chain-acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + ETF = 2,3-dehydroacyl-CoA + reduced ETF. tmpzr1t_l9r_go_relaxed.owl palmitoyl-coenzyme A dehydrogenase activity|palmitoyl-CoA dehydrogenase activity|long-chain-acyl-CoA:acceptor 2,3-oxidoreductase activity|long-chain-acyl-CoA:(acceptor) 2,3-oxidoreductase activity|long-chain acyl-coenzyme A dehydrogenase activity EC:1.3.8.8|MetaCyc:LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN|RHEA:17721 molecular_function owl:Class GO:0042951 biolink:NamedThing arbutin transmembrane transporter activity Enables the transfer of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015573 biolink:NamedThing beta-glucoside transmembrane transporter activity Enables the transfer of beta-glucosides from one side of a membrane to the other. Beta-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in a beta configuration. tmpzr1t_l9r_go_relaxed.owl beta-glucoside permease activity GO:0015582 molecular_function owl:Class GO:0032491 biolink:NamedThing detection of molecule of fungal origin The series of events in which a stimulus from a molecule of fungal origin is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of fungus associated molecule|detection of fungal associated molecule biological_process owl:Class GO:0001855 biolink:NamedThing complement component C4b binding Binding to a C4b product of the classical complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031715 biolink:NamedThing C5L2 anaphylatoxin chemotactic receptor binding Binding to a C5L2 anaphylatoxin chemotactic receptor. tmpzr1t_l9r_go_relaxed.owl C5L2 anaphylatoxin chemotactic receptor ligand molecular_function owl:Class GO:0031714 biolink:NamedThing C5a anaphylatoxin chemotactic receptor binding Binding to a C5a anaphylatoxin chemotactic receptor. tmpzr1t_l9r_go_relaxed.owl C5a anaphylatoxin chemotactic receptor ligand molecular_function owl:Class GO:0046825 biolink:NamedThing regulation of protein export from nucleus Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl regulation of protein transport from nucleus to cytoplasm|regulation of protein export from cell nucleus|regulation of protein-nucleus export|regulation of protein export out of nucleus biological_process owl:Class GO:0046897 biolink:NamedThing N-terminal peptidyl-tyrosine methylation The methylation of the N-terminal tyrosine of proteins to form the derivative N-methyl-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0338 biological_process owl:Class GO:0007594 biolink:NamedThing puparial adhesion The adhesion of the puparia of Diptera to their substrate; normally effected by a 'glue' secreted by the larval salivary gland and expectorated at the time of pupariation. tmpzr1t_l9r_go_relaxed.owl puparial glue biological_process owl:Class GO:0008955 biolink:NamedThing peptidoglycan glycosyltransferase activity Catalysis of the reaction: [GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-diphosphoundecaprenol + GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol = [GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-diphosphoundecaprenol + undecaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl penicillin binding protein (3 or 1B) activity|peptidoglycan transglycosylase activity|PG-II activity|undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase activity|bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase activity|peptidoglycan TGase activity EC:2.4.1.129|MetaCyc:RXN0-5405|RHEA:23708 molecular_function owl:Class GO:0043183 biolink:NamedThing vascular endothelial growth factor receptor 1 binding Binding to a vascular endothelial growth factor receptor 1. tmpzr1t_l9r_go_relaxed.owl VEGFR 1 binding|Flt-1 binding|VEGF receptor 1 binding molecular_function owl:Class GO:1903617 biolink:NamedThing positive regulation of mitotic cytokinesis, site selection Any process that activates or increases the frequency, rate or extent of mitotic cytokinesis, site selection. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T10:52:25Z biological_process owl:Class GO:0106230 biolink:NamedThing protein depropionylation The removal of a propionyl group from a residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl hjd 2019-10-17T19:10:50Z biological_process owl:Class GO:0002359 biolink:NamedThing B-1 B cell proliferation The expansion of a B-1 B cell by cell division. Follows B cell activation. tmpzr1t_l9r_go_relaxed.owl B-1 B-cell proliferation|B-1 B-lymphocyte proliferation|B-1 B lymphocyte proliferation biological_process owl:Class GO:0032884 biolink:NamedThing regulation of cell wall chitin biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cell wall chitin. tmpzr1t_l9r_go_relaxed.owl regulation of cell wall chitin synthesis|regulation of cell wall chitin anabolism|regulation of cell wall chitin biosynthesis|regulation of cell wall chitin formation biological_process owl:Class GO:0098991 biolink:NamedThing kainate selective glutamate receptor signaling pathway A series of molecular signals initiated by glutamate binding to an kainate-selective glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035037 biolink:NamedThing sperm entry An endocytosis process that results in penetration of the egg shell through the micropyle (a specialized anterior opening in the vitelline envelope) and entry of the entire sperm, including the surrounding plasma membrane and the sperm tail, into the egg cytoplasm. This step in fertilization is seen in Drosophila, where a plasma membrane fusion event between the sperm and the egg does not occur. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061085 biolink:NamedThing regulation of histone H3-K27 methylation Any process that modulates the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-26T01:23:52Z biological_process owl:Class GO:0016166 biolink:NamedThing phytoene dehydrogenase activity Catalysis of the dehydrogenation of phytoene to produce a carotenoid intermediate such as phytofluene. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052075 biolink:NamedThing positive regulation by symbiont of host jasmonic acid-mediated defense response Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the jasmonic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of host jasmonic acid-mediated defense response|induction by organism of host JA-mediated defense response|activation by symbiont of host jasmonic acid-mediated defense response|up-regulation by symbiont of host jasmonic acid-mediated defense response|stimulation by symbiont of host jasmonic acid-mediated defense response|positive regulation by organism of host JA-mediated defense response|upregulation by symbiont of host jasmonic acid-mediated defense response|positive regulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction|up regulation by symbiont of host jasmonic acid-mediated defense response GO:0052273 biological_process owl:Class GO:0042968 biolink:NamedThing homoserine transport The directed movement of homoserine, alpha-amino-gamma-hydroxybutyric acid, an intermediate in the biosynthesis of cystathionine, threonine and methionine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903460 biolink:NamedThing mitotic DNA replication leading strand elongation Any leading strand elongation that is involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl leading strand elongation involved in DNA replication during S phase involved in mitotic cell cycle|leading strand elongation involved in DNA replication involved in S-phase involved in mitotic cell cycle|leading strand elongation involved in mitotic nuclear cell cycle DNA replication|leading strand elongation involved in DNA replication involved in S phase involved in mitotic cell cycle|leading strand elongation involved in nuclear cell cycle DNA replication involved in mitotic cell cycle|leading strand elongation involved in mitotic DNA replication vw 2014-09-23T13:33:03Z biological_process owl:Class GO:0033056 biolink:NamedThing D-ornithine metabolic process The chemical reactions and pathways involving D-ornithine, the D-enantiomer of the amino acid ornithine, i.e. (2R)-2,5-diaminopentanoic acid. tmpzr1t_l9r_go_relaxed.owl D-ornithine metabolism biological_process owl:Class GO:0102830 biolink:NamedThing verbascose synthase activity Catalysis of the reaction: 2 stachyose <=> verbascose + raffinose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8286 molecular_function owl:Class GO:0001653 biolink:NamedThing peptide receptor activity Combining with an extracellular or intracellular peptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl exogenous peptide receptor activity|endogenous peptide receptor activity molecular_function owl:Class GO:0099127 biolink:NamedThing envenomation resulting in positive regulation of argininosuccinate synthase activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the activation of the cytosolic argininosuccinate synthase in the bitten organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904070 biolink:NamedThing ascaroside biosynthetic process The chemical reactions and pathways resulting in the formation of ascaroside. tmpzr1t_l9r_go_relaxed.owl ascaroside formation|ascaroside synthesis|ascaroside biosynthesis|ascaroside anabolism kmv 2015-03-20T02:40:20Z biological_process owl:Class GO:1904069 biolink:NamedThing ascaroside metabolic process The chemical reactions and pathways involving ascaroside. tmpzr1t_l9r_go_relaxed.owl ascaroside metabolism kmv 2015-03-20T02:40:14Z biological_process owl:Class GO:0047464 biolink:NamedThing heparosan-N-sulfate-glucuronate 5-epimerase activity Catalysis of the reaction: heparosan-N-sulfate D-glucuronate = heparosan-N-sulfate L-iduronate. tmpzr1t_l9r_go_relaxed.owl polyglucuronate epimerase activity|heparosan-N-sulfate-D-glucuronosyl 5-epimerase activity|poly[(1,4)-beta-D-glucuronosyl-(1,4)-N-sulfo-alpha-D-glucosaminyl] glucurono-5-epimerase activity|heparosan-N-sulphate-glucuronate 5-epimerase activity|D-glucuronyl C-5 epimerase activity|heparosan epimerase activity|C-5 uronosyl epimerase activity MetaCyc:5.1.3.17-RXN|EC:5.1.3.17|RHEA:20197 molecular_function owl:Class GO:0009990 biolink:NamedThing contact guidance Cell recognition involving the deposition of specific pathways in the extracellular matrix that guide migrating cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009989 biolink:NamedThing cell-matrix recognition Cell recognition that involves the interaction of the cell with the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102115 biolink:NamedThing peptidoglycan asparagine synthase activity Catalysis of the reaction: ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-gamma-D-isoglutaminyl-N-(beta-D-asparatyl)-L-lysyl-D-alanyl-D-alanine + ammonium + ATP = H+ + ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-gamma-D-isoglutaminyl-N-(beta-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11338 molecular_function owl:Class GO:0032164 biolink:NamedThing hyphal septin cap A faint structure formed of septins found at the leading edge of growth in hyphae of fungal cells growing filamentously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090491 biolink:NamedThing N-hydroxy-L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating) Catalyzes the reaction: N-Hydroxy-L-tryptophan + Oxygen + NADPH + H+ = N,N-Dihydroxy-L-tryptophan + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-16T16:27:19Z molecular_function owl:Class GO:2000381 biolink:NamedThing negative regulation of mesoderm development Any process that stops, prevents or reduces the frequency, rate or extent of mesoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:10:02Z biological_process owl:Class GO:2000380 biolink:NamedThing regulation of mesoderm development Any process that modulates the frequency, rate or extent of mesoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:09:46Z biological_process owl:Class GO:0033364 biolink:NamedThing mast cell secretory granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule in a mast cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. tmpzr1t_l9r_go_relaxed.owl mast cell secretory granule maturation|mast cell secretory granule organization and biogenesis|mast cell secretory granule organisation biological_process owl:Class GO:0070835 biolink:NamedThing chromium ion transmembrane transporter activity Enables the transfer of chromium (Cr) ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-30T03:04:09Z molecular_function owl:Class GO:0031733 biolink:NamedThing CCR8 chemokine receptor binding Binding to a CCR8 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR8 chemokine receptor ligand molecular_function owl:Class GO:0031142 biolink:NamedThing induction of conjugation upon nitrogen starvation The process in which a cell initiates conjugation with cellular fusion upon nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000452 biolink:NamedThing snoRNA guided rRNA 2'-O-methylation The posttranscriptional addition of methyl groups to the 2'-oxygen atom of nucleotide residues in an rRNA molecule during ribosome biogenesis using a snoRNA guide that targets the position of methylation. tmpzr1t_l9r_go_relaxed.owl snoRNA guided rRNA 2'-O-ribose methylation biological_process owl:Class GO:0033512 biolink:NamedThing L-lysine catabolic process to acetyl-CoA via saccharopine The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate saccharopine. tmpzr1t_l9r_go_relaxed.owl L-lysine degradation to acetyl-CoA via saccharopine|L-lysine breakdown to acetyl-CoA via saccharopine MetaCyc:LYSINE-DEG1-PWY biological_process owl:Class GO:0035946 biolink:NamedThing mitochondrial mRNA surveillance The set of processes involved in identifying and degrading messenger RNA (mRNA) within the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial aberrant RNA catabolic process|mitochondrial mRNA quality control|mitochondrial messenger RNA surveillance bf 2011-07-28T10:37:07Z biological_process owl:Class GO:0052831 biolink:NamedThing inositol-1,3,4,6-tetrakisphosphate 1-phosphatase activity Catalysis of the reaction: inositol-1,3,4,6-tetrakisphosphate + H2O = inositol-3,4,6-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855159 ai 2011-11-29T10:58:27Z molecular_function owl:Class GO:0031852 biolink:NamedThing mu-type opioid receptor binding Binding to a mu-type opioid receptor. tmpzr1t_l9r_go_relaxed.owl mu-type opioid receptor ligand|morphine receptor binding molecular_function owl:Class GO:0018061 biolink:NamedThing peptidyl-L-3-phenyllactic acid biosynthetic process from peptidyl-phenylalanine The modification of a N-terminal peptidyl-phenylalanine residue by either oxidative deamination or by transamination and subsequent reduction to form peptidyl-L-3-phenyllactic acid. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-3-phenyllactic acid anabolism from peptidyl-phenylalanine|peptidyl-L-3-phenyllactic acid formation from peptidyl-phenylalanine|peptidyl-L-3-phenyllactic acid synthesis from peptidyl-phenylalanine RESID:AA0128 biological_process owl:Class GO:0007111 biolink:NamedThing meiosis II cytokinesis A cell cycle process that results in the division of the cytoplasm of a cell after meiosis II, resulting in the separation of the original cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis after meiosis II biological_process owl:Class GO:0080124 biolink:NamedThing pheophytinase activity Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide. tmpzr1t_l9r_go_relaxed.owl pheophytin pheophorbide hydrolase activity dhl 2009-04-28T04:16:11Z molecular_function owl:Class GO:0010122 biolink:NamedThing arginine catabolic process to alanine via ornithine The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including alanine, via ornithine. tmpzr1t_l9r_go_relaxed.owl arginine breakdown to alanine via ornithine|arginine degradation to alanine via ornithine MetaCyc:ARGORNPROST-PWY biological_process owl:Class GO:1904094 biolink:NamedThing positive regulation of autophagic cell death Any process that activates or increases the frequency, rate or extent of autophagic cell death. tmpzr1t_l9r_go_relaxed.owl positive regulation of programmed cell death by macroautophagy|positive regulation of type II programmed cell death|activation of autophagic cell death|upregulation of type II programmed cell death|up-regulation of type II programmed cell death|activation of programmed cell death by macroautophagy|up-regulation of autophagic cell death|up regulation of type II programmed cell death|up-regulation of programmed cell death by macroautophagy|upregulation of programmed cell death by macroautophagy|up regulation of autophagic cell death|up regulation of programmed cell death by macroautophagy|activation of type II programmed cell death|upregulation of autophagic cell death bhm 2015-03-26T16:41:45Z biological_process owl:Class GO:1904096 biolink:NamedThing protein tyrosine phosphatase complex A protein complex which is capable of protein tyrosine phosphatase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is ACPP in human (UniProt symbol P15309) in PMID:22389722 (inferred from physical interaction). bhm 2015-03-27T14:34:59Z cellular_component owl:Class GO:0052076 biolink:NamedThing induction by symbiont of host ethylene-mediated defense response Any process in which an organism activates, maintains or increases the frequency, rate or extent of the ethylene-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of ethylene-mediated defense response of other organism involved in symbiotic interaction|positive regulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism involved in symbiotic interaction|upregulation by symbiont of host ethylene-mediated defense response|up regulation by symbiont of host ethylene-mediated defense response|up-regulation by symbiont of host ethylene-mediated defense response|positive regulation by symbiont of host ethylene-mediated defense response|positive regulation by symbiont of defense-related host ethylene-mediated signal transduction pathway|activation by symbiont of host ethylene-mediated defense response|stimulation by symbiont of host ethylene-mediated defense response GO:0052269|GO:0052071|GO:0052274 biological_process owl:Class GO:0044164 biolink:NamedThing host cell cytosol The part of the host cell cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. tmpzr1t_l9r_go_relaxed.owl host cytosol jl 2009-09-04T11:03:27Z cellular_component owl:Class GO:0031797 biolink:NamedThing type 2 metabotropic GABA receptor binding Binding to a type 2 metabotropic GABA receptor. tmpzr1t_l9r_go_relaxed.owl type 2 metabotropic GABA receptor ligand molecular_function owl:Class GO:0001975 biolink:NamedThing response to amphetamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044064 biolink:NamedThing modulation by symbiont of host respiratory system process The alteration by a symbiont organism of the functioning of a respiratory system process, an organ system process carried out by any of the organs or tissues of the respiratory system. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host respiratory system process biological_process owl:Class GO:0047813 biolink:NamedThing D-arabinitol 4-dehydrogenase activity Catalysis of the reaction: D-arabinitol + NAD+ = D-xylulose + NADH. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.11|RHEA:17921|MetaCyc:D-ARABINITOL-4-DEHYDROGENASE-RXN molecular_function owl:Class GO:0033447 biolink:NamedThing AGA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AGA codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA Note that in the standard genetic code, AGA codes for arginine. molecular_function owl:Class GO:2000873 biolink:NamedThing regulation of histone H4 acetylation involved in response to DNA damage stimulus Any process that modulates the frequency, rate or extent of histone H4 acetylation involved in response to DNA damage stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of histone H4 acetylation involved in DNA damage response|regulation of histone H4 acetylation involved in cellular response to DNA damage stimulus|regulation of histone H4 acetylation involved in cellular DNA damage response|regulation of histone H4 acetylation involved in response to DNA damage|regulation of histone H4 acetylation involved in response to genotoxic stress mah 2011-07-26T10:05:23Z biological_process owl:Class GO:0102814 biolink:NamedThing caffeoyl-CoA:delphinidin-3,5,3'-triglucoside 5-O-glucoside-6-O-hydroxycinnamoyltransferase activity Catalysis of the reaction: delphinidin 3,3',5-tri-O-beta-D-glucoside betaine + caffeoyl-CoA <=> delphinidin 3-O-glucosyl-5-O-(caffeoylglucoside-3'-O-glucoside) + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8232 molecular_function owl:Class GO:0102897 biolink:NamedThing abietadienal hydroxylase activity Catalysis of the reaction: abietal + NADPH + O2 <=> abietate + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8510|RHEA:56928 molecular_function owl:Class GO:1901143 biolink:NamedThing insulin catabolic process The chemical reactions and pathways resulting in the breakdown of insulin. tmpzr1t_l9r_go_relaxed.owl insulin breakdown|insulin catabolism|insulin degradation pm 2012-07-13T12:33:03Z biological_process owl:Class GO:0060683 biolink:NamedThing regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling Any process that modulates the rate, frequency, or extent of salivary gland branching as a result of the transfer of information from the epithelial cells to the mesenchymal cells of the salivary gland. tmpzr1t_l9r_go_relaxed.owl regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signalling dph 2009-06-03T06:30:56Z biological_process owl:Class GO:0043098 biolink:NamedThing purine deoxyribonucleoside salvage Any process which produces a purine deoxyribonucleoside from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903771 biolink:NamedThing positive regulation of beta-galactosidase activity Any process that activates or increases the frequency, rate or extent of beta-galactosidase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of hydrolact|up-regulation of beta-D-lactosidase activity|up-regulation of trilactase activity|positive regulation of exo-(1->4)-beta-D-galactanase activity|upregulation of beta-D-galactanase activity|upregulation of hydrolact|upregulation of lactozym|positive regulation of sumiklat|upregulation of beta-D-lactosidase activity|up-regulation of lactose hydrolysis|positive regulation of maxilact|positive regulation of hydrolact|up regulation of maxilact|activation of exo-(1->4)-beta-D-galactanase activity|up regulation of trilactase activity|up-regulation of beta-lactosidase activity|up regulation of lactozym|positive regulation of lactozym|up-regulation of maxilact|up-regulation of exo-(1->4)-beta-D-galactanase activity|activation of lactose hydrolysis|activation of sumiklat|upregulation of beta-galactosidase activity|up-regulation of lactozym|up regulation of sumiklat|activation of lactozym|positive regulation of lactose hydrolysis|upregulation of beta-lactosidase activity|up-regulation of beta-D-galactanase activity|upregulation of lactose hydrolysis|activation of beta-D-galactanase activity|positive regulation of beta-D-galactanase activity|activation of beta-D-lactosidase activity|upregulation of trilactase activity|up regulation of beta-lactosidase activity|activation of S 2107|upregulation of beta-D-galactoside galactohydrolase activity|activation of oryzatym|up-regulation of S 2107|up regulation of exo-(1->4)-beta-D-galactanase activity|positive regulation of beta-lactosidase activity|upregulation of sumiklat|up regulation of beta-D-galactoside galactohydrolase activity|up regulation of oryzatym|activation of beta-lactosidase activity|activation of trilactase activity|up regulation of beta-D-lactosidase activity|up regulation of S 2107|positive regulation of oryzatym|activation of beta-galactosidase activity|activation of maxilact|positive regulation of S 2107|up-regulation of sumiklat|positive regulation of beta-D-galactoside galactohydrolase activity|upregulation of oryzatym|activation of hydrolact|up regulation of lactose hydrolysis|upregulation of exo-(1->4)-beta-D-galactanase activity|positive regulation of trilactase activity|activation of beta-D-galactoside galactohydrolase activity|up regulation of beta-galactosidase activity|up regulation of beta-D-galactanase activity|up-regulation of oryzatym|up regulation of hydrolact|up-regulation of beta-D-galactoside galactohydrolase activity|up-regulation of beta-galactosidase activity|positive regulation of beta-D-lactosidase activity|upregulation of S 2107|upregulation of maxilact nc 2015-01-06T10:53:32Z biological_process owl:Class GO:1902561 biolink:NamedThing origin recognition complex assembly The aggregation, arrangement and bonding together of a set of components to form an origin recognition complex. tmpzr1t_l9r_go_relaxed.owl ORC assembly|origin recognition complex formation|ORC formation|origin of replication recognition complex assembly|origin of replication recognition complex formation mah 2013-12-10T12:11:50Z biological_process owl:Class GO:0008685 biolink:NamedThing 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity Catalysis of the reaction: 4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP. tmpzr1t_l9r_go_relaxed.owl MECDP-synthase activity|MECP synthase activity|2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol CMP-lyase (cyclizing)|2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol CMP-lyase (cyclizing; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate-forming) EC:4.6.1.12|RHEA:23864|MetaCyc:RXN0-302|KEGG_REACTION:R05637 molecular_function owl:Class GO:0032150 biolink:NamedThing ubiquinone biosynthetic process from chorismate The chemical reactions and pathways resulting in the formation of ubiquinone, beginning with the conversion of chorismate to 4-hydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034444 biolink:NamedThing regulation of plasma lipoprotein oxidation Any process that modulates the frequency, rate or extent of lipoprotein oxidation, occurring in the blood plasma. tmpzr1t_l9r_go_relaxed.owl regulation of plasma lipoprotein particle oxidation biological_process owl:Class GO:0035793 biolink:NamedThing positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway Any process that increases the frequency, rate or extent of metanephric mesenchymal cell migration as a result of the series of molecular signals generated as a consequence of a platelet-derived growth factor receptor-beta binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl positive regulation of metanephric mesenchymal cell migration by PDGFR-beta signaling pathway|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signalling pathway|positive regulation of metanephric mesenchymal cell migration by PDGF receptor-beta signaling pathway|positive regulation of metanephric mesenchymal cell migration by betaPDGF receptor signaling pathway bf 2011-04-11T01:30:03Z biological_process owl:Class GO:2000591 biolink:NamedThing positive regulation of metanephric mesenchymal cell migration Any process that activates or increases the frequency, rate or extent of metanephric mesenchymal cell migration. tmpzr1t_l9r_go_relaxed.owl positive regulation of metanephric mesenchyme chemotaxis bf 2011-04-07T03:29:53Z biological_process owl:Class GO:0046035 biolink:NamedThing CMP metabolic process The chemical reactions and pathways involving CMP, cytidine monophosphate. tmpzr1t_l9r_go_relaxed.owl CMP metabolism biological_process owl:Class GO:0071976 biolink:NamedThing cell gliding Cell motility that results in the smooth movement of a cell along a solid surface. tmpzr1t_l9r_go_relaxed.owl cell gliding motility mah 2010-10-21T02:33:24Z biological_process owl:Class GO:0031489 biolink:NamedThing myosin V binding Binding to a class V myosin; myosin V is a dimeric molecule involved in intracellular transport. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098625 biolink:NamedThing methylselenol reductase activity Catalysis of the reaction: NADPH + H+ + CH3SeOH => NADP+ + CH3SeH + H2O. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5263614 molecular_function owl:Class GO:0000700 biolink:NamedThing mismatch base pair DNA N-glycosylase activity Catalysis of the removal of single bases present in mismatches by the cleavage the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097702 biolink:NamedThing response to oscillatory fluid shear stress Any response to fluid shear stress where the fluid is moving across a solid surface with an oscillatory flow. Disturbed flow patterns at the arterial bifurcations and curvatures may cause endothelial dysfunction, which initiates atherosclerosis. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-27T14:17:08Z biological_process owl:Class GO:0085041 biolink:NamedThing arbuscule Highly branched symbiont haustoria within host root cortex cells, responsible for nutrient exchange. tmpzr1t_l9r_go_relaxed.owl See also: periarbuscular membrane ; GO:0085042. jl 2010-07-27T04:29:03Z cellular_component owl:Class GO:0085035 biolink:NamedThing haustorium A projection from a cell or tissue that penetrates the host's cell wall and invaginates the host cell membrane. tmpzr1t_l9r_go_relaxed.owl See also: extrahaustorial matrix ; GO:0085036 and extrahaustorial membrane ; GO:0085037. jl 2010-07-27T03:42:24Z cellular_component owl:Class GO:0047043 biolink:NamedThing 3-alpha-hydroxycholanate dehydrogenase activity Catalysis of the reaction: lithocholate + NAD(+) = 3-oxo-5beta-cholanate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 3alpha-hydroxycholanate dehydrogenase activity|alpha-hydroxy-cholanate dehydrogenase activity|3alpha-hydroxy-5beta-cholanate:NAD+ oxidoreductase activity KEGG_REACTION:R04139|MetaCyc:1.1.1.52-RXN|EC:1.1.1.52|RHEA:19585 molecular_function owl:Class GO:0071293 biolink:NamedThing cellular response to tellurium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to tellurium mah 2009-12-10T04:16:52Z biological_process owl:Class GO:0046690 biolink:NamedThing response to tellurium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to tellurium|tellurium sensitivity/resistance biological_process owl:Class GO:0098643 biolink:NamedThing banded collagen fibril A supramolecular assembly of fibrillar collagen complexes in the form of a long fiber (fibril) with transverse striations (bands). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901242 biolink:NamedThing ABC-type doxorubicin transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + doxorubicin(in) = ADP + phosphate + doxorubicin(out). tmpzr1t_l9r_go_relaxed.owl doxorubicin transmembrane-transporting ATPase activity|ATPase-coupled doxorubicin transmembrane transporter activity TC:3.A.1.105.1 jl 2012-08-07T15:10:13Z molecular_function owl:Class GO:0006173 biolink:NamedThing dADP biosynthetic process The chemical reactions and pathways resulting in the formation of dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dADP synthesis|dADP biosynthesis|dADP anabolism|dADP formation biological_process owl:Class GO:0045741 biolink:NamedThing positive regulation of epidermal growth factor-activated receptor activity Any process that activates or increases the frequency, rate or extent of EGF-activated receptor activity. tmpzr1t_l9r_go_relaxed.owl upregulation of epidermal growth factor receptor activity|up-regulation of epidermal growth factor receptor activity|positive regulation of EGFR activity|positive regulation of EGF receptor activity|stimulation of epidermal growth factor receptor activity|positive regulation of epidermal growth factor receptor activity|up regulation of epidermal growth factor receptor activity|activation of epidermal growth factor receptor activity biological_process owl:Class GO:0062191 biolink:NamedThing galactoxylomannan biosynthetic process The chemical reactions and pathways resulting in the formation of the exopolysaccharide galactoxylomannan. Galactoxylomannan is produced by a pathogenic fungus and causes paralysis in some animals. tmpzr1t_l9r_go_relaxed.owl glucuronoxylomannogalactan biosynthetic process|galactoxylomannan formation|galactoxylomannan synthesis|galactoxylomannan biosynthesis|galactoxylomannan anabolism|GalXM biosynthetic process dph 2019-12-06T14:44:36Z biological_process owl:Class GO:0047518 biolink:NamedThing 1-methyladenosine nucleosidase activity Catalysis of the reaction: 1-methyladenosine + H(2)O = 1-methyladenine + ribofuranose. tmpzr1t_l9r_go_relaxed.owl 1-methyladenosine ribohydrolase activity|1-methyladenosine hydrolase activity MetaCyc:1-METHYLADENOSINE-NUCLEOSIDASE-RXN|RHEA:12865|EC:3.2.2.13|KEGG_REACTION:R03885 molecular_function owl:Class GO:0007554 biolink:NamedThing regulation of ecdysteroid biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ecdysteroids. tmpzr1t_l9r_go_relaxed.owl regulation of ecdysteroid anabolism|regulation of ecdysteroid synthesis|regulation of ecdysteroid biosynthesis|regulation of ecdysteroid formation biological_process owl:Class GO:0050948 biolink:NamedThing positive regulation of early stripe melanocyte differentiation Any process that activates or increases the frequency, rate or extent of early stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl up regulation of early stripe melanocyte differentiation|upregulation of early stripe melanocyte differentiation|stimulation of early stripe melanocyte differentiation|activation of early stripe melanocyte differentiation|up-regulation of early stripe melanocyte differentiation|positive regulation of early stripe melanophore differentiation biological_process owl:Class GO:0070692 biolink:NamedThing CTDK-1 complex A positive transcription elongation factor complex that comprises the CDK kinase CTK1 (in budding yeast), Lsk1 (in fission yeast) (corresponding to the Panther PTHR24056:SF39 family), a cyclin and an additional gamma subunit (corresponding to the InterPRO entry IPR024638). tmpzr1t_l9r_go_relaxed.owl Ctk complex|CTDK-I complex|C-terminal domain kinase I complex|trimeric positive transcription elongation factor complex b mah 2009-06-03T03:18:04Z cellular_component owl:Class GO:0120221 biolink:NamedThing maintenance of ciliary planar beating movement pattern Any process involved in maintaining the planar beating pattern of ciliary movement pattern. Connection between the outer doublets and the central pair via the radial spokes constrains ciliary movement to the planar beating pattern. Cilia that lack this connection, such as those in the embryonic node or Kupfer's vesicle, display radial movement. tmpzr1t_l9r_go_relaxed.owl Note that we deem cilium and microtubule-based flagellum to be equivalent. krc 2019-12-10T21:34:54Z biological_process owl:Class GO:0018291 biolink:NamedThing molybdenum incorporation into iron-sulfur cluster The incorporation of molybdenum into an iron-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl molybdenum incorporation into iron-sulphur cluster biological_process owl:Class GO:0032577 biolink:NamedThing phosphatidylcholine:cardiolipin O-linoleoyltransferase activity Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group from phosphatidylcholine to an oxygen atom on a cardiolipin molecule. tmpzr1t_l9r_go_relaxed.owl phosphatidylcholine:cardiolipin linoleoyltransferase molecular_function owl:Class GO:0018520 biolink:NamedThing cis-1,2-dihydroxy-4-methylcyclohexa-3,5-diene-1-carboxylate dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydroxy-4-methylcyclohexa-3,5-diene-1-carboxylate + NADP+ = 4-methylcatechol + NADPH + H+ + CO2. tmpzr1t_l9r_go_relaxed.owl cis-1,2-dihydroxy-4-methylcyclohexa-3,5-diene-1-carboxylate:NAD(P)+ oxidoreductase (decarboxylating)|4-methylcyclohexa-3,5-diene-1,2-cis-diol-1-carboxylic acid dehydrogenase activity UM-BBD_reactionID:r0179|EC:1.3.1.67|MetaCyc:1.3.1.67-RXN molecular_function owl:Class GO:0103104 biolink:NamedThing 6-methylthiohexyldesulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 6-methylthiohexyldesulfoglucosinolate + 3'-phosphonato-5'-adenylyl sulfate <=> adenosine 3',5'-bismonophosphate + H+ + 6-methylthiohexylglucosinolate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4331 molecular_function owl:Class GO:0003172 biolink:NamedThing sinoatrial valve development The progression of the sinoatrial valve over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl SA valve development dph 2009-10-08T11:15:39Z biological_process owl:Class GO:0060107 biolink:NamedThing annuli extracellular matrix The extracellular matrix that is a regularly spaced circumferential ridge present in the cortical region of the cuticle. Annuli are delineated by annular furrows and are present throughout the cuticle with the exception of lateral regions where longitudinal alae are present. tmpzr1t_l9r_go_relaxed.owl annular rings|annule(s)|annulae|annulus cellular_component owl:Class GO:0071165 biolink:NamedThing GINS complex assembly The aggregation, arrangement and bonding together of a set of components to form a GINS complex, a heterotetrameric protein complex that associates with DNA replication origins and replication forks. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-19T03:37:20Z biological_process owl:Class GO:2000654 biolink:NamedThing regulation of cellular response to testosterone stimulus Any process that modulates the frequency, rate or extent of cellular response to testosterone stimulus. tmpzr1t_l9r_go_relaxed.owl vk 2011-05-02T03:23:56Z biological_process owl:Class GO:0106160 biolink:NamedThing negative regulation of small RNA loading onto RISC Any process that stops, prevents or reduces the frequency, rate or extent of small RNA loading onto RISC. tmpzr1t_l9r_go_relaxed.owl hjd 2018-11-30T15:42:16Z biological_process owl:Class GO:0043643 biolink:NamedThing tetracycline metabolic process The chemical reactions and pathways involving tetracycline, (4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, a broad-spectrum antibiotic produced by streptomyces bacteria that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). tmpzr1t_l9r_go_relaxed.owl tetracycline metabolism|tetracyclin metabolic process|tetracyclin metabolism biological_process owl:Class GO:0032158 biolink:NamedThing septin band A diffuse ring composed of a series of septin bars that run parallel to the long axis of the cell. This type of septin structure has been observed in a number of locations associated with polarized grown and/or deposition of new membrane, but not with cytokinesis, such as at the shmoo (mating projection) neck, at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901279 biolink:NamedThing D-ribose 5-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-ribose 5-phosphate breakdown|D-ribose 5-phosphate degradation|D-ribose 5-phosphate catabolism yaf 2012-08-17T15:00:19Z biological_process owl:Class GO:0102381 biolink:NamedThing stevioside glucosyltransferase activity (rebaudioside A forming) Catalysis of the reaction: stevioside + UDP-alpha-D-glucose = rebaudioside A + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13517 molecular_function owl:Class GO:0050518 biolink:NamedThing 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + CTP = 4-CDP-2-C-methyl-D-erythritol + diphosphate. tmpzr1t_l9r_go_relaxed.owl CTP:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|MCT activity|4-diphosphocytidyl-2C-methyl-D-erythritol synthase activity|4-diphosphocytidyl-2-C-methyl-D-erythritol synthase activity|MEP cytidylyltransferase activity KEGG_REACTION:R05633|MetaCyc:2.7.7.60-RXN|RHEA:13429|EC:2.7.7.60 GO:0008699 molecular_function owl:Class GO:0099016 biolink:NamedThing DNA end degradation evasion by virus A process by which a virus evades and ends degradation of its DNA when free viral-DNA ends are exposed as part of its life-cycle. For example, some bacteriophages encode proteins that bind to free viral DNA ends, protecting them from degradation by host exonucleases. tmpzr1t_l9r_go_relaxed.owl VZ:3963 biological_process owl:Class GO:0019673 biolink:NamedThing GDP-mannose metabolic process The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-mannose metabolism biological_process owl:Class GO:0033010 biolink:NamedThing paranodal junction A highly specialized cell-cell junction found in vertebrates, which forms between a neuron and a glial cell, and has structural similarity to Drosophila septate junctions. It flanks the node of Ranvier in myelinated nerve and electrically isolates the myelinated from unmyelinated nerve segments and physically separates the voltage-gated sodium channels at the node from the cluster of potassium channels underneath the myelin sheath. tmpzr1t_l9r_go_relaxed.owl paranodal axoglial junction|axoglial septate junction|paranodal septate junction cellular_component owl:Class GO:0102857 biolink:NamedThing 1-18:1-2-18:3-phosphatidylcholinedesaturase activity Catalysis of the reaction: 1-18:1-2-18:3-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:2-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.22|MetaCyc:RXN-8324 molecular_function owl:Class GO:0102369 biolink:NamedThing 11alpha-30-dihydroxy beta-amyrin dehydrogenase activity Catalysis of the reaction: 11alpha,30-dihydroxy-beta-amyrin + NADPH + O2 + H+ <=> 30-hydroxy-11-oxo-beta-amyrin + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13491 molecular_function owl:Class GO:1901399 biolink:NamedThing negative regulation of transforming growth factor beta3 activation Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta3 activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of TGFbeta 3 activation|negative regulation of TGFB3 activation|down regulation of TGFbeta 3 activation|down regulation of TGF-beta 3 activation|down-regulation of TGFB3 activation|down-regulation of transforming growth factor beta3 activation|downregulation of TGFB3 activation|down-regulation of TGFbeta 3 activation|downregulation of TGF-beta 3 activation|downregulation of transforming growth factor beta3 activation|inhibition of TGFB3 activation|down regulation of TGFB3 activation|down-regulation of TGF-beta 3 activation|inhibition of transforming growth factor beta3 activation|inhibition of TGFbeta 3 activation|inhibition of TGF-beta 3 activation|negative regulation of TGF-beta 3 activation|downregulation of TGFbeta 3 activation|down regulation of transforming growth factor beta3 activation bf 2012-10-01T10:50:32Z biological_process owl:Class GO:0043969 biolink:NamedThing histone H2B acetylation The modification of histone H2B by the addition of an acetyl group. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050233 biolink:NamedThing pyranose oxidase activity Catalysis of the reaction: D-glucose + O(2) = 2-dehydro-D-glucose + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl pyranose:oxygen 2-oxidoreductase activity|pyranose-2-oxidase activity|glucose 2-oxidase activity MetaCyc:PYRANOSE-OXIDASE-RXN|KEGG_REACTION:R00302|RHEA:10552|EC:1.1.3.10 molecular_function owl:Class GO:0010126 biolink:NamedThing mycothiol metabolic process The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione. tmpzr1t_l9r_go_relaxed.owl mycothiol metabolism biological_process owl:Class GO:0048370 biolink:NamedThing lateral mesoderm formation The process that gives rise to the lateral mesoderm. This process pertains to the initial formation of the structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl lateral plate mesoderm biosynthesis|lateral plate mesoderm formation biological_process owl:Class GO:0097096 biolink:NamedThing facial suture morphogenesis The process in which any suture between facial bones is generated and organized. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-05T03:06:27Z biological_process owl:Class GO:0150053 biolink:NamedThing cerebellar climbing fiber to Purkinje cell synapse A synapse of a climbing fiber onto the dendrites of a Purkinje cell in cerebellum. The climbing fiber originates from the inferior olivary nucleus of the medulla oblongata. tmpzr1t_l9r_go_relaxed.owl cerebellar climbing fibre to Purkinje cell synapse bc 2018-05-09T09:57:20Z cellular_component owl:Class GO:0035765 biolink:NamedThing motor neuron precursor migration involved in dorsal motor nucleus of vagus nerve formation The orderly movement of a motor neuron precursor cell that contributes to formation of the dorsal motor nucleus of the vagus nerve. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-29T02:52:09Z biological_process owl:Class GO:0010477 biolink:NamedThing response to sulfur dioxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047139 biolink:NamedThing glutathione-homocystine transhydrogenase activity Catalysis of the reaction: homocystine + 2 reduced glutathione = oxidized glutathione + 2 homocysteine. tmpzr1t_l9r_go_relaxed.owl glutathione:homocystine oxidoreductase activity EC:1.8.4.1|RHEA:11464|MetaCyc:1.8.4.1-RXN molecular_function owl:Class GO:0016159 biolink:NamedThing muconolactone delta-isomerase activity Catalysis of the reaction: 2,5-dihydro-5-oxofuran-2-acetate = 3,4-dihydro-5-oxofuran-2-acetate. tmpzr1t_l9r_go_relaxed.owl muconolactone D-isomerase activity|muconolactone isomerase activity|5-oxo-4,5-dihydrofuran-2-acetate delta3-delta2-isomerase activity EC:5.3.3.4|RHEA:12348|MetaCyc:MUCONOLACTONE-DELTA-ISOMERASE-RXN molecular_function owl:Class GO:1902209 biolink:NamedThing negative regulation of bacterial-type flagellum assembly Any process that stops, prevents or reduces the frequency, rate or extent of bacterial-type flagellum assembly. tmpzr1t_l9r_go_relaxed.owl inhibition of bacterial flagellum assembly|downregulation of bacterial flagellum assembly|down-regulation of bacterial-type flagellum assembly|negative regulation of bacterial flagellum assembly|down-regulation of bacterial flagellum assembly|down regulation of bacterial-type flagellum assembly|down regulation of bacterial flagellum assembly|inhibition of bacterial-type flagellum assembly|downregulation of bacterial-type flagellum assembly jl 2013-06-11T14:20:24Z biological_process owl:Class GO:0034775 biolink:NamedThing glutathione transmembrane transport A process in which glutathione is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane glutathione transport|glutathione membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. biological_process owl:Class GO:0098812 biolink:NamedThing nuclear rRNA polyadenylation involved in polyadenylation-dependent rRNA catabolic process The enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end of a rRNA, occurring as part of the process of polyadenylation-dependent rRNA catabolism in the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear rRNA polyadenylation involved in poly(A)-dependent rRNA catabolic process|nuclear rRNA polyadenylation during polyadenylation-dependent rRNA catabolic process biological_process owl:Class GO:0075506 biolink:NamedThing entry of viral genome into host nucleus through nuclear pore complex via importin Viral penetration into the host nucleus where the viral genome passes through the nuclear pore complex (NPC) using the cellular importin transport machinery. tmpzr1t_l9r_go_relaxed.owl entry of viral genome into host nucleus via cellular importin transport through the nuclear pore complex This mechanism is used by some RNA viruses (e.g. Orthomyxoviridae), some dsDNA viruses (e.g. Polyomaviridae) and some ssRNA viruses (e.g. Lentivirus). jl 2011-07-26T04:36:46Z biological_process owl:Class GO:0010161 biolink:NamedThing red light signaling pathway The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl red light signal transduction|red light signalling pathway|red light phototransduction biological_process owl:Class GO:0043406 biolink:NamedThing positive regulation of MAP kinase activity Any process that activates or increases the frequency, rate or extent of MAP kinase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitogen-activated protein kinase activity|positive regulation of mitogen activated protein kinase activity|upregulation of MAPK activity|up-regulation of MAPK activity|stimulation of MAPK activity|up regulation of MAPK activity biological_process owl:Class GO:0140654 biolink:NamedThing tryprostatin A biosynthetic process The chemical reactions and pathways resulting in the formation of tryprostatin A. tmpzr1t_l9r_go_relaxed.owl tryprostatin A biosynthesis|tryprostatin A anabolism|tryprostatin A synthesis|tryprostatin A formation https://github.com/geneontology/go-ontology/issues/21495 pg 2021-05-27T08:39:56Z biological_process owl:Class GO:0150048 biolink:NamedThing cerebellar granule cell to Purkinje cell synapse A synapse of a granule cell fiber onto the dendrites of a Purkinje cell in cerebellum. tmpzr1t_l9r_go_relaxed.owl cerebellar parallel fiber to Purkinje cell synapse bc 2018-04-23T14:44:40Z cellular_component owl:Class GO:0047409 biolink:NamedThing alkenylglycerophosphoethanolamine hydrolase activity Catalysis of the reaction: H2O + 1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine = sn-glycero-3-phosphoethanolamine + an aldehyde. tmpzr1t_l9r_go_relaxed.owl 1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine aldehydohydrolase activity EC:3.3.2.5|RHEA:16905|MetaCyc:3.3.2.5-RXN molecular_function owl:Class GO:0009097 biolink:NamedThing isoleucine biosynthetic process The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl isoleucine anabolism|isoleucine formation|isoleucine synthesis|isoleucine biosynthesis MetaCyc:ILEUSYN-PWY biological_process owl:Class GO:0009624 biolink:NamedThing response to nematode Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode. tmpzr1t_l9r_go_relaxed.owl response to nematodes biological_process owl:Class GO:0061658 biolink:NamedThing URM1 conjugating enzyme activity Isoenergetic transfer of URM1 from one protein to another via the reaction X-URM1 + Y -> Y-URM1 + X, where both the X-URM1 and Y-URM1 linkages are thioester bonds between the C-terminal amino acid of URM1 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:37:26Z molecular_function owl:Class GO:0042294 biolink:NamedThing URM1 transferase activity Catalysis of the transfer of URM1 from one protein to another via the reaction X-URM1 + Y --> Y-URM1 + X, where both X-URM1 and Y-URM1 are covalent linkages. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030573 biolink:NamedThing bile acid catabolic process The chemical reactions and pathways resulting in the breakdown of bile acids, any of a group of steroid carboxylic acids occurring in bile. tmpzr1t_l9r_go_relaxed.owl cholate catabolic process|bile acid degradation|bile acid catabolism|bile acid breakdown|bile acid 7alpha-dehydroxylation pathway MetaCyc:7ALPHADEHYDROX-PWY GO:0019613 biological_process owl:Class GO:0047669 biolink:NamedThing amylosucrase activity Catalysis of the reaction: sucrose + 1,4-alpha-D-glucosyl(n) = D-fructose + 1,4-alpha-D-glucosyl(n+1). tmpzr1t_l9r_go_relaxed.owl sucrose-1,4-alpha-glucan glucosyltransferase activity|sucrose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity|sucrose-glucan glucosyltransferase activity RHEA:24572|MetaCyc:AMYLOSUCRASE-RXN|EC:2.4.1.4 molecular_function owl:Class GO:0032122 biolink:NamedThing oral apparatus organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the oral apparatus. The oral apparatus is a funnel-like structure used by the cell to collect food and channel it to the cytostome, characteristic of ciliate protozoans. tmpzr1t_l9r_go_relaxed.owl oral apparatus organisation|oral apparatus morphogenesis|stomatogenesis|oral apparatus organization and biogenesis biological_process owl:Class GO:0043731 biolink:NamedThing 6-hydroxynicotinate 3-monooxygenase activity Catalysis of the oxidative decarboxylation of 6-hydroxynicotinate to 2,5-dihydroxypyridine, dependent on O2, NADH +H+ and FAD. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.114|RHEA:27333|MetaCyc:RXN-7573 molecular_function owl:Class GO:0060290 biolink:NamedThing transdifferentiation The conversion of a differentiated cell of one fate into a differentiated cell of another fate without first undergoing cell division or reversion to a more primitive or stem cell-like fate. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Transdifferentiation biological_process owl:Class GO:0042758 biolink:NamedThing long-chain fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of long-chain fatty acids, a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acid degradation|long-chain fatty acid catabolism|long-chain fatty acid breakdown biological_process owl:Class GO:0008609 biolink:NamedThing alkylglycerone-phosphate synthase activity Catalysis of the reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = 1-alkyl-glycerone 3-phosphate + a long-chain acid anion. tmpzr1t_l9r_go_relaxed.owl 1-acyl-glycerone-3-phosphate:long-chain-alcohol O-3-phospho-2-oxopropanyltransferase activity|alkyl DHAP synthetase activity|alkyl-DHAP synthase activity|dihydroxyacetone-phosphate acyltransferase activity|alkyldihydroxyacetone phosphate synthetase activity|alkyldihydroxyacetonephosphate synthase activity|alkyl-DHAP|DHAP-AT MetaCyc:ALKYLGLYCERONE-PHOSPHATE-SYNTHASE-RXN|RHEA:36171|EC:2.5.1.26|Reactome:R-HSA-390427 molecular_function owl:Class GO:0009127 biolink:NamedThing purine nucleoside monophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of purine nucleoside monophosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside monophosphate formation|purine nucleoside monophosphate anabolism|purine nucleoside monophosphate synthesis|purine nucleoside monophosphate biosynthesis biological_process owl:Class GO:0047337 biolink:NamedThing dolichyl-diphosphate-polyphosphate phosphotransferase activity Catalysis of the reaction: dolichyl diphosphate + long-chain-polyphosphate = dolichol-phosphate + long-chain-polyphosphate. tmpzr1t_l9r_go_relaxed.owl dolichylpyrophosphate:polyphosphate phosphotransferase activity|dolichyl-diphosphate:polyphosphate phosphotransferase activity RHEA:19417|MetaCyc:2.7.4.20-RXN|EC:2.7.4.20 molecular_function owl:Class GO:0070712 biolink:NamedThing RNA cytidine-uridine insertion The modification of an RNA molecule by insertion of an cytidine-uridine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RNA CU insertion mah 2009-06-08T05:27:01Z biological_process owl:Class GO:0021853 biolink:NamedThing cerebral cortex GABAergic interneuron migration The migration of GABAergic interneuron precursors from the subpallium to the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102077 biolink:NamedThing oleamide hydrolase activity Catalysis of the reaction: oleamide + H2O <=> oleate + ammonium. tmpzr1t_l9r_go_relaxed.owl EC:3.5.1.99|RHEA:26506|MetaCyc:RXN-10756 molecular_function owl:Class GO:0102779 biolink:NamedThing cannabidiolate synthase activity Catalysis of the reaction: cannabigerolate + O2 <=> cannabidiolate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl RHEA:34411|EC:1.21.3.8|MetaCyc:RXN-7855 molecular_function owl:Class GO:0018310 biolink:NamedThing protein-FMN linkage via S-(6-FMN)-L-cysteine The formation of a protein-FMN linkage via S-(6-FMN)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0220 biological_process owl:Class GO:0036505 biolink:NamedThing prosaposin receptor activity Combining with prosaposin to initiate a change in cell activity. Prosaposin is the glycoprotein precursor of four cleavage products (saposins A, B, C and D). tmpzr1t_l9r_go_relaxed.owl prosaposin-activated receptor activity bf 2015-06-11T10:13:10Z molecular_function owl:Class GO:1901543 biolink:NamedThing negative regulation of ent-pimara-8(14),15-diene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ent-pimara-8(14),15-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of ent-pimara-8(14),15-diene anabolism|negative regulation of ent-pimara-8(14),15-diene formation|inhibition of ent-pimara-8(14),15-diene formation|down-regulation of ent-pimara-8(14),15-diene biosynthesis|down-regulation of ent-pimara-8(14),15-diene anabolism|down-regulation of ent-pimara-8(14),15-diene formation|inhibition of ent-pimara-8(14),15-diene biosynthesis|downregulation of ent-pimara-8(14),15-diene anabolism|inhibition of ent-pimara-8(14),15-diene anabolism|down regulation of ent-pimara-8(14),15-diene biosynthesis|down regulation of ent-pimara-8(14),15-diene synthesis|inhibition of ent-pimara-8(14),15-diene biosynthetic process|negative regulation of ent-pimara-8(14),15-diene anabolism|negative regulation of ent-pimara-8(14),15-diene synthesis|negative regulation of ent-pimara-8(14),15-diene biosynthesis|downregulation of ent-pimara-8(14),15-diene biosynthesis|down-regulation of ent-pimara-8(14),15-diene biosynthetic process|downregulation of ent-pimara-8(14),15-diene formation|down-regulation of ent-pimara-8(14),15-diene synthesis|inhibition of ent-pimara-8(14),15-diene synthesis|down regulation of ent-pimara-8(14),15-diene formation|downregulation of ent-pimara-8(14),15-diene biosynthetic process|downregulation of ent-pimara-8(14),15-diene synthesis|down regulation of ent-pimara-8(14),15-diene biosynthetic process di 2012-10-26T11:37:58Z biological_process owl:Class GO:0106361 biolink:NamedThing protein-arginine rhamnosyltransferase activity Catalysis of the reaction: dTDP-beta-L-rhamnose + L-arginyl-[protein] = dTDP + H(+) + N(omega)-(L-rhamnosyl)-L-arginyl-[protein]. tmpzr1t_l9r_go_relaxed.owl RHEA:66692 hjd 2021-02-05T15:39:52Z molecular_function owl:Class GO:0044194 biolink:NamedThing cytolytic granule A specialized secretory lysosome that is present in cells with cytolytic capability such as cytotoxic T lymphocytes and natural killer cells. Cytolytic granules mediate the storage and regulated excretion of lytic molecules for killing of target cells. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-20T01:22:13Z cellular_component owl:Class GO:2000348 biolink:NamedThing regulation of CD40 signaling pathway Any process that modulates the frequency, rate or extent of signaling via the CD40 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of CD40 signalling pathway mah 2011-02-03T10:29:40Z biological_process owl:Class GO:0047225 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: N-acetyl-beta-D-glucosaminyl-1,3-N-acetyl-D-galactosaminyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,3)-N-acetyl-D-galactosaminyl-R + UDP. tmpzr1t_l9r_go_relaxed.owl core 4 beta6-GalNAc-transferase activity|uridine diphosphoacetylglucosamine-mucin beta(1->6)-acetylglucosaminyltransferase B|O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IV activity|UDP-N-acetyl-D-glucosamine:O-oligosaccharide-glycoprotein (N-acetyl-D-glucosamine to N-acetyl-D-galactosamine of N-acetyl-beta-D-glucosaminyl-1,3-N-acetyl-D-galactosaminyl-R) beta-1,6-N-acetyl-D-glucosaminyltransferase activity|core 6beta-GalNAc-transferase B|core 6-beta-GalNAc-transferase B activity MetaCyc:2.4.1.148-RXN|EC:2.4.1.148 molecular_function owl:Class GO:0098851 biolink:NamedThing double-stranded miRNA binding Binding to double-stranded miRNA. double-stranded miRNA is formed by processing of pre-miRNA stem-loop structures. tmpzr1t_l9r_go_relaxed.owl miRNA duplex binding molecular_function owl:Class GO:0003725 biolink:NamedThing double-stranded RNA binding Binding to double-stranded RNA. tmpzr1t_l9r_go_relaxed.owl dsRNA binding molecular_function owl:Class GO:0001068 biolink:NamedThing transcription regulatory region RNA binding Binding to a RNA region within the transcript that regulates the transcription of a gene, cistron, or operon. tmpzr1t_l9r_go_relaxed.owl krc 2010-10-21T04:15:32Z molecular_function owl:Class GO:0007174 biolink:NamedThing epidermal growth factor catabolic process The chemical reactions and pathways resulting in the breakdown of epidermal growth factor (EGF), following internalization of the receptor-bound ligand into the signal-receiving cell. Full breakdown of epidermal growth factor results in a ligand that is unable to bind and activate its receptor. tmpzr1t_l9r_go_relaxed.owl EGF breakdown|receptor-mediated EGF processing|epidermal growth factor ligand processing|intracellular EGF processing|epidermal growth factor catabolism|epidermal growth factor breakdown|EGF receptor ligand processing|EGF catabolism This term describes the breakdown of epidermal growth factor within the cell, following internalization. For proteolysis events that result in the maturation of an epidermal growth factor receptor ligand, see 'epidermal growth factor receptor ligand maturation ; GO:'. biological_process owl:Class GO:0009046 biolink:NamedThing zinc D-Ala-D-Ala carboxypeptidase activity Catalysis of the cleavage of the D-alanyl-D-alanine bond in (Ac)2-L-lysyl-D-alanyl-D-alanine. tmpzr1t_l9r_go_relaxed.owl Zn2+ G peptidase activity|D-alanyl-D-alanine-cleaving carboxypeptidase activity|DD-carboxypeptidase-transpeptidase activity|DD-carboxypeptidase|G enzyme|Zn(2+) G peptidase activity|D-alanyl-D-alanine hydrolase activity MetaCyc:3.4.17.14-RXN|EC:3.4.17.14 molecular_function owl:Class GO:1902025 biolink:NamedThing nitrate import The directed movement of nitrate into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl nitrate influx|nitrate uptake tb 2013-03-27T21:32:58Z biological_process owl:Class GO:1905153 biolink:NamedThing regulation of membrane invagination Any process that modulates the frequency, rate or extent of membrane invagination. tmpzr1t_l9r_go_relaxed.owl bf 2016-04-18T15:43:54Z biological_process owl:Class GO:0052589 biolink:NamedThing malate dehydrogenase (menaquinone) activity Catalysis of the reaction: (S)-malate + a menaquinone = oxaloacetate + a menaquinol. tmpzr1t_l9r_go_relaxed.owl (S)-malate:menaquinone oxidoreductase activity|(S)-malate:(menaquinone) oxidoreductase activity MetaCyc:RXNI-3|EC:1.1.5.4 molecular_function owl:Class GO:0033793 biolink:NamedThing aureusidin synthase activity Catalysis of the reactions: 2',4,4',6'-tetrahydroxychalcone + O2 = aureusidin + H2O, and 2',3,4,4',6'-pentahydroxychalcone + 1/2 O2 = aureusidin + H2O. tmpzr1t_l9r_go_relaxed.owl 2',4,4',6'-tetrahydroxychalcone:oxygen oxidoreductase activity molecular_function owl:Class GO:0080112 biolink:NamedThing seed growth The increase in size or mass of a seed. A seed is a propagating organ formed in the reproductive cycle of a spermatophyte, derived from the ovule and enclosing an embryo. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T02:52:07Z biological_process owl:Class GO:1903883 biolink:NamedThing positive regulation of interleukin-17-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of interleukin-17-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of IL-17-mediated signalling pathway|upregulation of IL-17-mediated signalling pathway|upregulation of interleukin-17-mediated signaling pathway|up-regulation of interleukin-17-mediated signalling pathway|up regulation of IL-17-mediated signalling pathway|up-regulation of IL-17-mediated signaling pathway|positive regulation of IL-17-mediated signalling pathway|up regulation of interleukin-17-mediated signalling pathway|activation of IL-17-mediated signalling pathway|activation of IL-17-mediated signaling pathway|upregulation of interleukin-17-mediated signalling pathway|up regulation of IL-17-mediated signaling pathway|upregulation of IL-17-mediated signaling pathway|positive regulation of IL-17-mediated signaling pathway|activation of interleukin-17-mediated signaling pathway|positive regulation of interleukin-17-mediated signalling pathway|up regulation of interleukin-17-mediated signaling pathway|activation of interleukin-17-mediated signalling pathway|up-regulation of interleukin-17-mediated signaling pathway krc 2015-02-06T16:26:56Z biological_process owl:Class GO:0008926 biolink:NamedThing mannitol-1-phosphate 5-dehydrogenase activity Catalysis of the reaction: D-mannitol 1-phosphate + NAD+ = D-fructose 6-phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.17|MetaCyc:MANNPDEHYDROG-RXN|RHEA:19661 molecular_function owl:Class GO:0017105 biolink:NamedThing acyl-CoA delta11-desaturase activity Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = delta11-acyl-CoA + acceptor + 2 H2O. The enzyme introduces a cis double bond at position C-11 of saturated fatty acyl-CoAs. tmpzr1t_l9r_go_relaxed.owl acyl-CoA delta(11)-desaturase activity|acyl-CoA D11-desaturase activity EC:1.14.19.5 molecular_function owl:Class GO:0060645 biolink:NamedThing peripheral mammary gland bud epithelial cell differentiation The process in which a relatively unspecialized epithelial cell of the mammary placode becomes an epithelial cell at the periphery of the mammary gland bud. Cells at the periphery of the bud are larger that those of the surrounding epithelium and are arranged concentrically. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:06:16Z biological_process owl:Class GO:0086050 biolink:NamedThing membrane repolarization during bundle of His cell action potential The process in which ions are transported across a membrane such that the bundle of His cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl membrane repolarization during bundle of His cardiac muscle cell action potential dph 2011-11-16T11:50:41Z biological_process owl:Class GO:0009854 biolink:NamedThing oxidative photosynthetic carbon pathway The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052772 biolink:NamedThing brefeldin A esterase activity Catalysis of the hydrolysis of brefeldin A to produce brefeldin A acid. Brefeldin A is also known as gamma,4-dihydroxy-2-(6-hydroxy-1-heptenyl)-4-cyclopentanecrotonic acid lambda-lactone. tmpzr1t_l9r_go_relaxed.owl BFA esterase activity|brefeldin A hydrolase activity ai 2011-10-03T12:01:00Z molecular_function owl:Class GO:0099121 biolink:NamedThing fungal sorus development The process whose specific outcome is the progression of a fungal sorus over time, from its formation to the mature structure. A fungal sorus is a spore containing structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018277 biolink:NamedThing protein deamination The removal of an amino group from a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid deamination biological_process owl:Class GO:0102211 biolink:NamedThing unsaturated rhamnogalacturonyl hydrolase activity Catalysis of the reaction: 2-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)-alpha-L-rhamnopyranose(1-) + H2O <=> (4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate + alpha-L-rhamnopyranose. tmpzr1t_l9r_go_relaxed.owl RHEA:30927|EC:3.2.1.172|MetaCyc:RXN-12174 molecular_function owl:Class GO:1905899 biolink:NamedThing regulation of smooth muscle tissue development Any process that modulates the frequency, rate or extent of smooth muscle tissue development. tmpzr1t_l9r_go_relaxed.owl bhm 2017-02-01T14:31:16Z biological_process owl:Class GO:0070191 biolink:NamedThing methionine-R-sulfoxide reductase activity Catalysis of the reaction: L-methionine R-oxide + thioredoxin = L-methionine + thioredoxin disulfide; can act on free oxidized methionine with specificity for the R enantiomer; does not act on oxidized methionine in peptide linkage. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010654 biolink:NamedThing apical cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an apical cell. The apical cell is the upper cell formed after the first division of the zygote. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003216 biolink:NamedThing cardiac left atrium formation The developmental process pertaining to the initial formation of a left cardiac atrium from unspecified parts. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:52:31Z biological_process owl:Class GO:0032430 biolink:NamedThing positive regulation of phospholipase A2 activity Any process that activates or increases the activity of the enzyme phospholipase A2. tmpzr1t_l9r_go_relaxed.owl stimulation of phospholipase A2 activity|up regulation of phospholipase A2 activity|up-regulation of phospholipase A2 activity|activation of phospholipase A2 activity|upregulation of phospholipase A2 activity biological_process owl:Class GO:1900116 biolink:NamedThing extracellular negative regulation of signal transduction Any negative regulation of signal transduction that takes place in extracellular region. tmpzr1t_l9r_go_relaxed.owl inhibition of signal transduction in extracellular region|downregulation of signal transduction in extracellular region|down-regulation of signal transduction in extracellular region|extracellular inhibition of signaling pathway|negative regulation of signaling pathway in extracellular region|down regulation of signal transduction in extracellular region|negative regulation of signalling pathway in extracellular region bf 2012-02-22T10:27:56Z biological_process owl:Class GO:0016594 biolink:NamedThing glycine binding Binding to glycine, aminoethanoic acid. tmpzr1t_l9r_go_relaxed.owl aminoethanoic acid binding|aminoacetic acid binding|Gly binding molecular_function owl:Class GO:0110126 biolink:NamedThing phloem loading The process of loading solutes into the sieve tube or companion cell of the phloem for long distance transport from source to sink. tmpzr1t_l9r_go_relaxed.owl kmv 2018-09-07T21:24:54Z biological_process owl:Class GO:0005332 biolink:NamedThing gamma-aminobutyric acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) = gamma-aminobutyric acid(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl 4-aminobutyrate:sodium symporter activity|GABA:sodium symporter activity|sodium/chloride-dependent GABA transporter activity|betaine/GABA:sodium symporter activity|4-aminobutanoate:sodium symporter activity Reactome:R-HSA-444007 See also the molecular function term 'neurotransmitter:sodium symporter activity ; GO:0005328'. molecular_function owl:Class GO:1902734 biolink:NamedThing regulation of receptor-mediated virion attachment to host cell Any process that modulates the frequency, rate or extent of receptor-mediated virion attachment to host cell. tmpzr1t_l9r_go_relaxed.owl regulation of virion attachment, binding of host cell surface receptor als 2014-02-25T12:25:56Z biological_process owl:Class GO:0047115 biolink:NamedThing trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity Catalysis of the reaction: NADP+ + trans-1,2-dihydrobenzene-1,2-diol = NADPH + catechol. tmpzr1t_l9r_go_relaxed.owl dihydrodiol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol:NADP+ oxidoreductase activity RHEA:16729|MetaCyc:1.3.1.20-RXN|EC:1.3.1.20 molecular_function owl:Class GO:0103100 biolink:NamedThing UDP-glucose: 6-methylthiohexylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 6-methylthiohexylhydroximate <=> H+ + 5-methylthiopentyldesulfoglucosinolate + UDP(3-). tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.195|MetaCyc:RXNQT-4325 molecular_function owl:Class GO:0004910 biolink:NamedThing interleukin-1, type II, blocking receptor activity Combining with interleukin-1 to initiate a change in cell activity by inhibiting the activity of type I interleukin receptors. tmpzr1t_l9r_go_relaxed.owl IL-1 type II, blocking binding|IL-1 type II, blocking receptor|interleukin-1, type II, blocking binding|interleukin-1 blocking receptor activity|interleukin-1 type II receptor activity GO:0019968 molecular_function owl:Class GO:0033291 biolink:NamedThing eukaryotic 80S initiation complex A protein complex composed of the large and small ribosomal subunits, methionyl-initiatior tRNA, and the capped mRNA. The initiator tRNA is positioned at the ribosomal P site at the AUG codon corresponding to the beginning of the coding region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019235 biolink:NamedThing sensory perception of slow pain The series of events required for an organism to receive a slow pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. Slow pain is often subjectively described as an aching or throbbing pain; in humans, the signals from a slow pain stimulus are perceived and relayed along unmyelinated C fibers to the central nervous system, reaching their target in about 1 second. Slow pain is often associated with tissue destruction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990983 biolink:NamedThing tRNA demethylation The removal of a methyl group from one or more residues within a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl sp 2016-10-28T08:32:59Z biological_process owl:Class GO:0043812 biolink:NamedThing phosphatidylinositol-4-phosphate phosphatase activity Catalysis of the reaction: phosphatidylinositol-4-phosphate + H2O = phosphatidylinositol + orthophosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 4-phosphate phosphatase activity molecular_function owl:Class GO:0075198 biolink:NamedThing modulation of symbiont haustorium neck formation for entry into host Any process that modulates the frequency, rate or extent of symbiont haustorium neck formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0019817 biolink:NamedThing vesicle fusion with peroxisome The joining of the lipid bilayer membrane around a vesicle with the lipid bilayer membrane around the peroxisome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008467 biolink:NamedThing [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate. The [heparan sulfate]-glucosamine 3-sulfate has a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S. tmpzr1t_l9r_go_relaxed.owl heparin-glucosamine 3-O-sulphotransferase activity|3-OST-1 activity|3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase|glucosaminyl 3-O-sulfotransferase activity|heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity|heparin-glucosamine 3-O-sulfotransferase activity|3'-phosphoadenylyl-sulfate:heparin-glucosamine 3-O-sulfotransferase activity|isoform/isozyme 1 (3-OST-1, HS3ST1) EC:2.8.2.23|Reactome:R-HSA-2076611|MetaCyc:2.8.2.23-RXN|Reactome:R-HSA-2076383 molecular_function owl:Class GO:1904276 biolink:NamedThing regulation of wax biosynthetic process Any process that modulates the frequency, rate or extent of wax biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of wax formation|regulation of wax biosynthesis|regulation of wax anabolism|regulation of wax synthesis tb 2015-06-03T17:20:06Z biological_process owl:Class GO:0018220 biolink:NamedThing peptidyl-threonine palmitoylation The covalent attachment of a palmitoyl group to an oxygen (O) atom in a threonine residue to form peptidyl-O-palmitoyl-L-threonine. tmpzr1t_l9r_go_relaxed.owl peptidyl-threonine O-palmitoylation RESID:AA0079 Palmitoylation of a non-terminal threonine residue always occurs on an oxygen (O) atom. biological_process owl:Class GO:0051073 biolink:NamedThing adenosylcobinamide-GDP ribazoletransferase activity Catalysis of the reaction: adenosylcobinamide-GDP + alpha-ribazole = GMP + adenosylcobalamin. tmpzr1t_l9r_go_relaxed.owl cobalamin (5'-phosphate) synthase activity|adenosylcobinamide-GDP:alpha-ribazole ribazoletransferase activity|cobalamin synthase activity|CobS|cobalamin-5'-phosphate synthase activity MetaCyc:COBALAMINSYN-RXN|EC:2.7.8.26|RHEA:16049 molecular_function owl:Class GO:0090324 biolink:NamedThing negative regulation of oxidative phosphorylation Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-05-14T10:21:33Z biological_process owl:Class GO:1903284 biolink:NamedThing positive regulation of glutathione peroxidase activity Any process that activates or increases the frequency, rate or extent of glutathione peroxidase activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of glutathione:hydrogen-peroxide oxidoreductase activity|positive regulation of reduced glutathione peroxidase activity|activation of glutathione peroxidase activity|up regulation of non-selenium glutathione peroxidase activity|up-regulation of glutathione peroxidase activity|up regulation of reduced glutathione peroxidase activity|upregulation of non-selenium glutathione peroxidase activity|upregulation of glutathione peroxidase activity|up regulation of glutathione peroxidase activity|up-regulation of selenium-glutathione peroxidase activity|activation of glutathione:hydrogen-peroxide oxidoreductase activity|activation of non-selenium glutathione peroxidase activity|positive regulation of non-selenium glutathione peroxidase activity|positive regulation of GSH peroxidase activity|activation of reduced glutathione peroxidase activity|up-regulation of GSH peroxidase activity|upregulation of GSH peroxidase activity|activation of selenium-glutathione peroxidase activity|activation of GSH peroxidase activity|up regulation of selenium-glutathione peroxidase activity|positive regulation of selenium-glutathione peroxidase activity|up-regulation of glutathione:hydrogen-peroxide oxidoreductase activity|up-regulation of non-selenium glutathione peroxidase activity|up regulation of GSH peroxidase activity|upregulation of glutathione:hydrogen-peroxide oxidoreductase activity|enhancement of GPX activity|upregulation of reduced glutathione peroxidase activity|up regulation of glutathione:hydrogen-peroxide oxidoreductase activity|up-regulation of reduced glutathione peroxidase activity|upregulation of selenium-glutathione peroxidase activity bf 2014-08-11T13:14:30Z biological_process owl:Class GO:0000815 biolink:NamedThing ESCRT III complex A complex with membrane scission activity that plays a major role in many processes where membranes are remodelled - including endosomal transport (vesicle budding), nuclear envelope organisation (membrane closure, mitotic bridge cleavage), and cytokinesis (abscission). tmpzr1t_l9r_go_relaxed.owl endosomal sorting complex required for transport https://github.com/geneontology/go-ontology/issues/22085 cellular_component owl:Class GO:0030882 biolink:NamedThing lipid antigen binding Binding to a lipid antigen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0099155 biolink:NamedThing synaptic transmission, noradrenergic The vesicular release of noradrenaline (norepinephrine) a presynapse, across a chemical synapse, the subsequent activation of noradrenaline receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl noradrenergic synaptic transmission dos 2017-07-05T14:36:55Z biological_process owl:Class GO:0018010 biolink:NamedThing glycoprotein N-palmitoyltransferase activity Catalysis of the reaction: palmitoyl-CoA + glycoprotein = CoA + N-palmitoylglycoprotein. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA:glycoprotein N-palmitoyltransferase activity|mucus glycoprotein fatty acyltransferase MetaCyc:GLYCOPROTEIN-N-PALMITOYLTRANSFERASE-RXN molecular_function owl:Class GO:0043032 biolink:NamedThing positive regulation of macrophage activation Any process that stimulates, induces or increases the rate of macrophage activation. tmpzr1t_l9r_go_relaxed.owl up-regulation of macrophage activation|up regulation of macrophage activation|stimulation of macrophage activation|activation of macrophage activation|upregulation of macrophage activation|positive regulation of macrophage polarization biological_process owl:Class GO:0043637 biolink:NamedThing puromycin metabolic process The chemical reactions and pathways involving puromycin, 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger. tmpzr1t_l9r_go_relaxed.owl puromycin metabolism biological_process owl:Class GO:1902231 biolink:NamedThing positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage. tmpzr1t_l9r_go_relaxed.owl upregulation of intrinsic apoptotic signaling pathway in response to DNA damage|upregulation of DNA damage response, signal transduction resulting in induction of apoptosis|positive regulation of DNA damage response, signal transduction resulting in induction of apoptosis|up regulation of DNA damage response, signal transduction resulting in induction of apoptosis|activation of DNA damage response, signal transduction resulting in induction of apoptosis|up regulation of intrinsic apoptotic signaling pathway in response to DNA damage|up-regulation of intrinsic apoptotic signaling pathway in response to DNA damage|activation of intrinsic apoptotic signaling pathway in response to DNA damage|up-regulation of DNA damage response, signal transduction resulting in induction of apoptosis rl 2013-06-14T09:40:03Z biological_process owl:Class GO:0010303 biolink:NamedThing limit dextrinase activity Catalysis of the hydrolysis of (1,6)-alpha-D-glucosidic linkages in alpha- and beta-limit dextrins of amylopectin and glycogen, and in amylopectin and pullulan. tmpzr1t_l9r_go_relaxed.owl R-enzyme|dextrin alpha-1,6-glucanohydrolase activity|amylopectin-1,6-glucosidase activity MetaCyc:3.2.1.142-RXN|MetaCyc:3.2.1.10-RXN|EC:3.2.1.142|MetaCyc:RXN-1824 molecular_function owl:Class GO:0038028 biolink:NamedThing insulin receptor signaling pathway via phosphatidylinositol 3-kinase The series of molecular signals generated as a consequence of the insulin receptor binding to its physiological ligand, where the signal is passed on via the phosphatidylinositol 3-kinase cascade. tmpzr1t_l9r_go_relaxed.owl insulin receptor signaling pathway via phosphatidylinositol 3-kinase cascade|insulin receptor signaling via PI3K|insulin receptor signaling pathway via PI3K cascade|insulin receptor signalling pathway via phosphatidylinositol 3-kinase cascade bf 2011-09-08T10:35:14Z biological_process owl:Class GO:1904992 biolink:NamedThing positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway Any process that activates or increases the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|upregulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|positive regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|up regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|up regulation of dopamine receptor, adenylate cyclase inhibiting pathway|activation of dopamine receptor, adenylate cyclase inhibiting pathway|up regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|upregulation of dopamine receptor, adenylyl cyclase inhibiting pathway|positive regulation of dopamine receptor, adenylyl cyclase inhibiting pathway|upregulation of dopamine receptor, adenylate cyclase inhibiting pathway|up regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|upregulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|activation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|positive regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|positive regulation of dopamine receptor, adenylate cyclase inhibiting pathway|activation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|activation of dopamine receptor, adenylyl cyclase inhibiting pathway|up-regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway|upregulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|up-regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|activation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|up regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|up-regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|up-regulation of dopamine receptor, adenylate cyclase inhibiting pathway kmv 2016-02-29T22:42:33Z biological_process owl:Class GO:0001856 biolink:NamedThing complement component C5a binding Binding to a C5a product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047398 biolink:NamedThing dolichylphosphate-mannose phosphodiesterase activity Catalysis of the reaction: dolichyl beta-D-mannosyl phosphate + H2O = dolichol-phosphate + mannose. tmpzr1t_l9r_go_relaxed.owl mannosylphosphodolichol phosphodiesterase activity|dolichyl-beta-D-mannosyl-phosphate dolichylphosphohydrolase activity MetaCyc:3.1.4.49-RXN|RHEA:12989|EC:3.1.4.49 molecular_function owl:Class GO:0032068 biolink:NamedThing type IV site-specific deoxyribonuclease complex A complex consisting of two proteins which acts as an endonuclease in DNA sequences containing a specific modified recognition site. Modifications may include methylation, hydroxymethylation, and glucosyl-hydroxymethylation. tmpzr1t_l9r_go_relaxed.owl type IV restriction enzyme complex cellular_component owl:Class GO:0034241 biolink:NamedThing positive regulation of macrophage fusion Any process that activates or increases the frequency, rate or extent of macrophage fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050346 biolink:NamedThing trans-L-3-hydroxyproline dehydratase activity Catalysis of the reaction: trans-L-3-hydroxyproline = 1-pyrroline-2-carboxylate + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl trans-L-3-hydroxyproline hydro-lyase activity|trans-L-3-hydroxyproline hydro-lyase (Delta1-pyrroline 2-carboxylate-forming) EC:4.2.1.77|KEGG_REACTION:R04374|MetaCyc:TRANS-L-3-HYDROXYPROLINE-DEHYDRATASE-RXN|RHEA:10320 molecular_function owl:Class GO:0000340 biolink:NamedThing RNA 7-methylguanosine cap binding Binding to a 7-methylguanosine group added cotranscriptionally to the 5' end of RNA molecules transcribed by polymerase II. tmpzr1t_l9r_go_relaxed.owl RNA m7G cap binding molecular_function owl:Class GO:0000339 biolink:NamedThing RNA cap binding Binding to a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl snRNA cap binding|binding to mRNA cap|mRNA cap binding molecular_function owl:Class GO:0016886 biolink:NamedThing ligase activity, forming phosphoric ester bonds Catalysis of the joining of two molecules, or two groups within a single molecule, via a phosphoric ester bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.5.-.- molecular_function owl:Class GO:0031606 biolink:NamedThing cytosolic proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the cytosolic proteasome core complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019773 biolink:NamedThing proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072214 biolink:NamedThing metanephric cortex development The process whose specific outcome is the progression of the metanephric cortex over time, from its formation to the mature structure. The metanephric cortex is the outer region of the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T01:29:49Z biological_process owl:Class GO:0098021 biolink:NamedThing viral capsid, decoration Component of the virus capsid (head), located on the outer head surface. Involved in the stabilization of the head structure and usually non-essential. tmpzr1t_l9r_go_relaxed.owl decoration protein bm 2012-07-19T11:52:53Z cellular_component owl:Class GO:0003159 biolink:NamedThing morphogenesis of an endothelium The process in which the anatomical structure of an endothelium is generated and organized. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-01T01:34:06Z biological_process owl:Class GO:0022628 biolink:NamedThing chloroplast large ribosomal subunit The large subunit of a ribosome contained within a chloroplast. tmpzr1t_l9r_go_relaxed.owl chloroplast ribosomal LSU complex|chloroplast ribosomal large subunit complex cellular_component owl:Class GO:0004531 biolink:NamedThing deoxyribonuclease II activity Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products. tmpzr1t_l9r_go_relaxed.owl DNase II activity|lysosomal DNase II activity|acid deoxyribonuclease activity|acid DNase activity|pancreatic DNase II|deoxyribonucleate 3'-nucleotidohydrolase activity EC:3.1.22.1|MetaCyc:3.1.22.1-RXN molecular_function owl:Class GO:2000210 biolink:NamedThing positive regulation of anoikis Any process that activates or increases the frequency, rate or extent of anoikis. tmpzr1t_l9r_go_relaxed.owl positive regulation of suspension induced apoptosis|positive regulation of detachment induced cell death mah 2010-11-03T02:00:36Z biological_process owl:Class GO:0072499 biolink:NamedThing photoreceptor cell axon guidance The chemotaxis process that directs the migration of a photoreceptor cell axon growth cone to its target in the optic lobe in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl photoreceptor cell axon pathfinding mah 2010-12-15T05:34:10Z biological_process owl:Class GO:0085001 biolink:NamedThing formation of stylet for nutrient acquisition The assembly of a stylet, a hollow protrusible spear-like symbiont structure projected into the host cell for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation by symbiont of stylet for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 jl 2010-02-24T01:49:06Z biological_process owl:Class GO:0032337 biolink:NamedThing positive regulation of activin secretion Any process that activates or increases the frequency, rate or extent of the regulated release of activin from a cell. tmpzr1t_l9r_go_relaxed.owl stimulation of activin secretion|activation of activin secretion|up-regulation of activin secretion|up regulation of activin secretion|upregulation of activin secretion biological_process owl:Class GO:0048074 biolink:NamedThing negative regulation of eye pigmentation Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in the eye of an organism. tmpzr1t_l9r_go_relaxed.owl downregulation of eye pigmentation|down regulation of eye pigmentation|down-regulation of eye pigmentation|inhibition of eye pigmentation biological_process owl:Class GO:0046347 biolink:NamedThing mannosamine biosynthetic process The chemical reactions and pathways resulting in the formation of mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins. tmpzr1t_l9r_go_relaxed.owl mannosamine formation|mannosamine synthesis|mannosamine biosynthesis|mannosamine anabolism biological_process owl:Class GO:0033329 biolink:NamedThing kaempferol O-glucoside metabolic process The chemical reactions and pathways involving O-glucosylated derivatives of kaempferol. tmpzr1t_l9r_go_relaxed.owl kaempferol O-glucoside metabolism biological_process owl:Class GO:0030340 biolink:NamedThing hyaluronate lyase activity Catalysis of the reaction: hyaluronate = n 3-(4-deoxy-beta-D-gluc-4-enuronosyl)-N-acetyl-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl hyaluronidase activity|mucinase activity|hyaluronidase [but cf. EC:3.2.1.35 (hyalurononglucosaminidase) and EC:3.2.1.36 (hyaluronoglucuronidase)]|glucuronoglycosaminoglycan lyase activity|spreading factor activity EC:4.2.2.1|MetaCyc:HYALURONATE-LYASE-RXN|RHEA:50240 molecular_function owl:Class GO:0033446 biolink:NamedThing AGC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AGC codon. tmpzr1t_l9r_go_relaxed.owl serine tRNA Note that in the standard genetic code, AGC codes for serine. molecular_function owl:Class GO:0071743 biolink:NamedThing IgE immunoglobulin complex, circulating A protein complex composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgE antibody Note that an IgE immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:1904692 biolink:NamedThing positive regulation of type B pancreatic cell proliferation Any process that activates or increases the frequency, rate or extent of type B pancreatic cell proliferation. tmpzr1t_l9r_go_relaxed.owl up regulation of pancreatic beta cell proliferation|upregulation of pancreatic beta cell proliferation|up-regulation of type B pancreatic cell proliferation|up-regulation of pancreatic beta cell proliferation|activation of pancreatic B cell proliferation|up-regulation of pancreatic B cell proliferation|positive regulation of pancreatic beta cell proliferation|activation of type B pancreatic cell proliferation|upregulation of type B pancreatic cell proliferation|upregulation of pancreatic B cell proliferation|activation of pancreatic beta cell proliferation|positive regulation of pancreatic B cell proliferation|up regulation of type B pancreatic cell proliferation|up regulation of pancreatic B cell proliferation sl 2015-09-25T15:23:44Z biological_process owl:Class GO:0009916 biolink:NamedThing alternative oxidase activity Catalysis of the oxidation of ubiquinol by diverting electrons from the standard electron transfer chain, transferring them from ubiquinol to oxygen and generating water as the product. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047981 biolink:NamedThing histidine N-acetyltransferase activity Catalysis of the reaction: L-histidine + acetyl-CoA = N(alpha)-acetyl-L-histidine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl histidine acetyltransferase activity|acetylhistidine synthetase activity|acetyl-CoA:L-histidine N-acetyltransferase activity EC:2.3.1.33|KEGG_REACTION:R01160|MetaCyc:HISTIDINE-N-ACETYLTRANSFERASE-RXN|RHEA:24596 molecular_function owl:Class GO:0097604 biolink:NamedThing temperature-gated cation channel activity Enables the transmembrane transfer of a cation by a channel that opens in response to a temperature stimulus (e.g. exposure to a temperature range different than the optimal temperature for that organism). tmpzr1t_l9r_go_relaxed.owl temperature gated cation channel activity|heat-activated cation channel activity|temperature-dependent cation channel activity|temperature-activated cation channel activity pr 2014-05-12T13:13:46Z molecular_function owl:Class GO:0050386 biolink:NamedThing ureidosuccinase activity Catalysis of the reaction: N-carbamoyl-L-aspartate + H(2)O + 2 H(+) = L-aspartate + CO(2) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl N-carbamoyl-L-aspartate amidohydrolase activity RHEA:14365|MetaCyc:UREIDOSUCCINASE-RXN|KEGG_REACTION:R00484|EC:3.5.1.7 molecular_function owl:Class GO:0047027 biolink:NamedThing benzyl-2-methyl-hydroxybutyrate dehydrogenase activity Catalysis of the reaction: benzyl (2R,3S)-2-methyl-3-hydroxybutanoate + NADP(+) = benzyl 2-methyl-3-oxobutanoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl benzyl-(2R,3S)-2-methyl-3-hydroxybutanoate:NADP+ 3-oxidoreductase activity|benzyl 2-methyl-3-hydroxybutyrate dehydrogenase activity EC:1.1.1.217|RHEA:16405|KEGG_REACTION:R04370|MetaCyc:1.1.1.217-RXN molecular_function owl:Class GO:0047543 biolink:NamedThing 2-hexadecenal reductase activity Catalysis of the reaction: NADP(+) + palmitaldehyde = trans-hexadec-2-enal + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl hexadecanal: NADP+ oxidoreductase activity|hexadecanal:NADP+ delta2-oxidoreductase activity MetaCyc:2-HEXADECENAL-REDUCTASE-RXN|RHEA:12444|EC:1.3.1.27|KEGG_REACTION:R02463 molecular_function owl:Class GO:0010501 biolink:NamedThing RNA secondary structure unwinding The process in which a secondary structure of RNA are broken or 'melted'. tmpzr1t_l9r_go_relaxed.owl RNA duplex unwinding biological_process owl:Class GO:0075210 biolink:NamedThing suppression by symbiont of host cAMP-mediated signal transduction Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of cAMP-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host cAMP-mediated signal transduction|negative regulation by symbiont of host cAMP-mediated signaling Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "Negative regulation by host of symbiont cAMP-mediated signal transduction ; GO:0075207". biological_process owl:Class GO:1905425 biolink:NamedThing negative regulation of Wnt-mediated midbrain dopaminergic neuron differentiation Any process that stops, prevents or reduces the frequency, rate or extent of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of Wnt signaling pathway involved in midbrain DA neurogenesis|down-regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|down regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt signaling pathway involved in mDA neuron differentiation|down-regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|negative regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|downregulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|down regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|negative regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wingless signaling pathway involved in midbrain dopaminergic neuron production|down regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|downregulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wg signalling pathway involved in midbrain DA neurogenesis|inhibition of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt-mediated midbrain DA neuron differentiation|down regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of frizzled signalling pathway involved in mDA neuron differentiation|inhibition of Wingless signaling pathway involved in midbrain DA neurogenesis|down regulation of Wg signaling pathway involved in mDA neuron differentiation|negative regulation of Wingless signalling pathway involved in mDA neuron differentiation|downregulation of frizzled signalling pathway involved in midbrain DA neurogenesis|negative regulation of Wg signaling pathway involved in mDA neuron differentiation|negative regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|inhibition of frizzled signalling pathway involved in midbrain dopaminergic neuron production|down-regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|downregulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wg signaling pathway involved in midbrain DA neurogenesis|inhibition of frizzled signaling pathway involved in mDA neuron differentiation|down regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|downregulation of Wnt-mediated midbrain DA neuron differentiation|inhibition of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|downregulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wg signaling pathway involved in mDA neuron differentiation|negative regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|downregulation of Wingless signaling pathway involved in mDA neuron differentiation|down regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wnt receptor signalling pathway involved in mDA neuron differentiation|down-regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|inhibition of Wnt signaling pathway involved in midbrain DA neurogenesis|down-regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|down-regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|inhibition of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt-mediated midbrain DA neuron differentiation|down-regulation of Wnt-mediated midbrain DA neuron differentiation|negative regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|negative regulation of midbrain dopaminergic neuron differentiation by negative regulation of Wnt signaling|down regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wingless signalling pathway involved in mDA neuron differentiation|down regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of frizzled signaling pathway involved in mDA neuron differentiation|downregulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|downregulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wg signalling pathway involved in midbrain DA neurogenesis|inhibition of Wnt signaling pathway involved in mDA neuron differentiation|inhibition of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of frizzled signaling pathway involved in midbrain DA neurogenesis|down regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|down regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|inhibition of frizzled signalling pathway involved in mDA neuron differentiation|negative regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|inhibition of Wingless signaling pathway involved in mDA neuron differentiation|downregulation of Wingless signalling pathway involved in mDA neuron differentiation|down-regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|inhibition of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|negative regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|downregulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of frizzled signaling pathway involved in mDA neuron differentiation|downregulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|inhibition of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wg signalling pathway involved in mDA neuron differentiation|inhibition of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wingless signalling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wingless signalling pathway involved in mDA neuron differentiation|downregulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wingless signaling pathway involved in mDA neuron differentiation|down-regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|downregulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|downregulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|down-regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of frizzled signaling pathway involved in mDA neuron differentiation|downregulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wg signalling pathway involved in midbrain DA neurogenesis|down regulation of Wingless signaling pathway involved in midbrain DA neurogenesis|down regulation of Wg signaling pathway involved in midbrain DA neurogenesis|down-regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|down regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wingless signaling pathway involved in mDA neuron differentiation|down regulation of Wnt-mediated midbrain DA neuron differentiation|downregulation of frizzled signaling pathway involved in midbrain DA neurogenesis|negative regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|downregulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of frizzled signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|inhibition of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|downregulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|down-regulation of Wg signaling pathway involved in mDA neuron differentiation|down regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wingless signaling pathway involved in midbrain DA neurogenesis|downregulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wg signaling pathway involved in midbrain DA neurogenesis|downregulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of frizzled signaling pathway involved in mDA neuron differentiation|negative regulation of Wg signalling pathway involved in mDA neuron differentiation|negative regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|negative regulation of frizzled signalling pathway involved in mDA neuron differentiation|downregulation of Wnt signaling pathway involved in mDA neuron differentiation|down-regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|inhibition of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|negative regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|downregulation of Wg signalling pathway involved in midbrain DA neurogenesis|inhibition of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|downregulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of frizzled signalling pathway involved in mDA neuron differentiation|negative regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation|inhibition of Wingless signalling pathway involved in midbrain DA neurogenesis|down-regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of Wnt signaling pathway involved in mDA neuron differentiation|down regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|negative regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt signaling pathway involved in midbrain DA neurogenesis|inhibition of Wnt-activated signaling pathway involved in mDA neuron differentiation|downregulation of Wg signalling pathway involved in mDA neuron differentiation|inhibition of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|inhibition of Wg signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|downregulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|down regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wg signalling pathway involved in mDA neuron differentiation|down regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|negative regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wnt receptor signaling pathway involved in mDA neuron differentiation|down regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation|down regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|down regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|down regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|negative regulation of Wingless signaling pathway involved in mDA neuron differentiation|downregulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of frizzled signalling pathway involved in mDA neuron differentiation|negative regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wg signalling pathway involved in midbrain DA neurogenesis|inhibition of Wnt receptor signaling pathway involved in midbrain DA neurogenesis|downregulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wg signaling pathway involved in midbrain DA neurogenesis|inhibition of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wingless signalling pathway involved in mDA neuron differentiation|downregulation of Wg signaling pathway involved in midbrain dopaminergic neuron production|down-regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|negative regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation|downregulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of Wnt signaling pathway involved in mDA neuron differentiation|downregulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate|down-regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|inhibition of Wg signalling pathway involved in midbrain dopaminergic neuron production|downregulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of frizzled signalling pathway involved in midbrain DA neurogenesis|downregulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis|negative regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate|down regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production|inhibition of Wg signaling pathway involved in mDA neuron differentiation|inhibition of Wg signaling pathway involved in midbrain DA neurogenesis|inhibition of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|inhibition of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|negative regulation of Wingless signalling pathway involved in midbrain DA neurogenesis|down regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production|down regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation|inhibition of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|downregulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production|negative regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation|inhibition of Wg signalling pathway involved in mDA neuron differentiation|down-regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation|down-regulation of frizzled signaling pathway involved in midbrain DA neurogenesis|down regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|downregulation of Wingless signalling pathway involved in midbrain DA neurogenesis|inhibition of Wnt-activated signaling pathway involved in midbrain DA neurogenesis|down regulation of frizzled signalling pathway involved in midbrain DA neurogenesis|down-regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation bf 2016-09-07T10:03:44Z biological_process owl:Class GO:0045149 biolink:NamedThing acetoin metabolic process The chemical reactions and pathways involving acetoin, 3-hydroxy-2-butanone, often as part of a fermentation pathway or for use as a carbon source. tmpzr1t_l9r_go_relaxed.owl acetoin metabolism biological_process owl:Class GO:0044375 biolink:NamedThing regulation of peroxisome size Any process that modulates the volume of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-01T04:37:59Z biological_process owl:Class GO:0042795 biolink:NamedThing snRNA transcription by RNA polymerase II The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter. tmpzr1t_l9r_go_relaxed.owl snRNA transcription from RNA polymerase II promoter|snRNA transcription from Pol II promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0043422 biolink:NamedThing protein kinase B binding Binding to protein kinase B, an intracellular kinase that is important in regulating glucose metabolism. tmpzr1t_l9r_go_relaxed.owl Akt binding|PKB binding molecular_function owl:Class GO:0032739 biolink:NamedThing positive regulation of interleukin-16 production Any process that activates or increases the frequency, rate, or extent of interleukin-16 production. tmpzr1t_l9r_go_relaxed.owl up-regulation of interleukin-16 production|activation of interleukin-16 production|positive regulation of IL-16 production|stimulation of interleukin-16 production|upregulation of interleukin-16 production|up regulation of interleukin-16 production|positive regulation of interleukin-16 biosynthetic process GO:0045377 biological_process owl:Class GO:0009064 biolink:NamedThing glutamine family amino acid metabolic process The chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. tmpzr1t_l9r_go_relaxed.owl glutamine family amino acid metabolism biological_process owl:Class GO:0102342 biolink:NamedThing 3-oxo-cerotoyl-CoA reductase activity Catalysis of the reaction: (R)-3-hydroxycerotoyl-CoA + NADP <=> 3-oxohexacosanoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13301|EC:1.1.1.330 molecular_function owl:Class GO:0000973 biolink:NamedThing posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed. tmpzr1t_l9r_go_relaxed.owl krc 2009-09-10T12:28:04Z biological_process owl:Class GO:0000972 biolink:NamedThing transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. tmpzr1t_l9r_go_relaxed.owl krc 2009-09-10T12:25:11Z biological_process owl:Class GO:0071448 biolink:NamedThing cellular response to alkyl hydroperoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkyl hydroperoxide stimulus. Alkyl hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH, where the substituent is an alkyl group. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:17:52Z biological_process owl:Class GO:0071447 biolink:NamedThing cellular response to hydroperoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroperoxide stimulus. Hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T04:16:42Z biological_process owl:Class GO:0106288 biolink:NamedThing regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA Any process that modulates the frequency, rate or extent of deadenylation-dependent decapping of nuclear-transcribed mRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2020-08-13T17:06:31Z biological_process owl:Class GO:0047704 biolink:NamedThing bile-salt sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + taurolithocholate = adenosine 3',5'-bisphosphate + taurolithocholate sulfate. tmpzr1t_l9r_go_relaxed.owl glycolithocholate sulfotransferase activity|BAST I activity|bile acid:3'-phosphoadenosine-5'-phosphosulfate sulfotransferase activity|bile salt:3'phosphoadenosine-5'-phosphosulfate:sulfotransferase activity|3'-phosphoadenylyl-sulfate:glycolithocholate sulfotransferase activity|bile-salt sulphotransferase activity|bile acid sulfotransferase I activity EC:2.8.2.14|MetaCyc:BILE-SALT-SULFOTRANSFERASE-RXN|RHEA:14013 molecular_function owl:Class GO:0047075 biolink:NamedThing 2,5-dihydroxypyridine 5,6-dioxygenase activity Catalysis of the reaction: H2O + O2 + 2,5-dihydroxypyridine = formate + maleamate. tmpzr1t_l9r_go_relaxed.owl pyridine-2,5-diol dioxygenase activity|2,5-dihydroxypyridine:oxygen 5,6-oxidoreductase activity|2,5-dihydroxypyridine oxygenase activity EC:1.13.11.9|RHEA:27522|UM-BBD_reactionID:r1443|MetaCyc:1.13.11.9-RXN molecular_function owl:Class GO:0016737 biolink:NamedThing oxidoreductase activity, acting on reduced flavodoxin as donor Catalysis of an oxidation-reduction (redox) reaction in which reduced flavodoxin acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.19.-.- molecular_function owl:Class GO:1901087 biolink:NamedThing benzylpenicillin catabolic process The chemical reactions and pathways resulting in the breakdown of benzylpenicillin. tmpzr1t_l9r_go_relaxed.owl penicillin G catabolic process|benzylpenicillin breakdown|benzylpenicillin degradation|benzylpenicillin catabolism|penicillin G degradation|penicillin G breakdown|penicillin G catabolism yaf 2012-07-05T10:28:59Z biological_process owl:Class GO:0120231 biolink:NamedThing DNA recombinase auxiliary factor complex A protein complex that binds to a recombinase and incrseases its activity. tmpzr1t_l9r_go_relaxed.owl DNA recombinase accessory factor complex|DNA recombinase activator complex https://github.com/geneontology/go-ontology/issues/19631 krc 2020-06-18T16:12:52Z cellular_component owl:Class GO:0051362 biolink:NamedThing peptide cross-linking via 2-tetrahydropyridinyl-5-imidazolinone glycine The formation of a 2-tetrahydropyridinyl-5-imidazolinone protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a lysine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. In addition, the residue N lysine undergoes cyclization. The alpha-amino nitrogen is replaced by the epsilon-amino nitrogen, the peptide chain is broken, residue N-1 is released as an amide, and a double bond is formed between the alpha-carbon and the nitrogen so that a tetrahydropyridine ring results. This modification is found in the GFP-like fluorescent chromoprotein FP538 from the sea anemone Zoanthus species. tmpzr1t_l9r_go_relaxed.owl biosynthetic process of protein-protein cross-link via 2-tetrahydropyridinyl-5-imidazolinone glycine|biosynthesis of protein-protein cross-link via 2-tetrahydropyridinyl-5-imidazolinone glycine RESID:AA0382 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:1990222 biolink:NamedThing ProVWX complex The ProVWX complex belongs to the family of ATP-binding cassette (ABC) transporter proteins complexes. It consists of a cytoplasmic ATPase subunit ProV, a transmembrane subunit ProW and a periplasmic binding protein ProX. It is capable of translocating a wide variety of solute (e.g. glycine betaine) across the plasma membrane and is activated under osmotic stress conditions. tmpzr1t_l9r_go_relaxed.owl ATP-binding cassette (ABC) transporter complex ProVWX bhm 2013-10-16T09:09:17Z cellular_component owl:Class GO:0039523 biolink:NamedThing suppression by virus of host mRNA transcription via inhibition of RNA polymerase II activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host mRNA transcription by directly inhibiting RNA polymerase II activity. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host RNA polymerase II activity|inhibition of host RNA polymerase II by virus|suppression by virus of host RNA polymerase II activity|inhibition of host RNA polymerase II activity by virus https://github.com/geneontology/go-ontology/issues/22148 bf 2011-06-22T04:38:59Z biological_process owl:Class GO:0005237 biolink:NamedThing inhibitory extracellular ligand-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular inhibitory ligand has been bound by the channel complex or one of its constituent parts. Inhibitory ligands, such as GABA or glycine, open chloride-selective channels. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006032 biolink:NamedThing chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. tmpzr1t_l9r_go_relaxed.owl chitin breakdown|chitin catabolism|chitin degradation|beta-1,4-linked N-acetylglucosamine catabolism|beta-1,4-linked N-acetylglucosamine catabolic process biological_process owl:Class GO:0097148 biolink:NamedThing BCL-2 complex A homodimeric protein complex consisting of BCL-2, a member of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:51:16Z cellular_component owl:Class GO:0047531 biolink:NamedThing 2,5-diaminovalerate transaminase activity Catalysis of the reaction: 2-oxoglutarate + ornithine = 5-amino-2-oxopentanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 2,5-diaminopentanoate:2-oxoglutarate aminotransferase activity|2,5-diaminovalerate aminotransferase activity|diamino-acid transaminase activity|diamino acid aminotransferase activity|diamino-acid aminotransferase activity EC:2.6.1.8|KEGG_REACTION:R03248|MetaCyc:25-DIAMINOVALERATE-AMINOTRANSFERASE-RXN|RHEA:16017 molecular_function owl:Class GO:0102388 biolink:NamedThing UDP-N,N'-diacetylbacillosamine 2-epimerase activity Catalysis of the reaction: UDP-N,N'-diacetylbacillosamine + H2O <=> 2,4-diacetamido-2,4,6-trideoxy-alpha-D-mannopyranose + UDP + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.184|RHEA:34491|MetaCyc:RXN-13574 molecular_function owl:Class GO:0060801 biolink:NamedThing negative regulation of trophoblast cell differentiation by transforming growth factor beta signaling pathway The transforming growth factor signaling process that decreases the rate, frequency, or extent of trophoblast stem cells differentiating into the more mature cells of the trophoblast. tmpzr1t_l9r_go_relaxed.owl negative regulation of trophoblast cell differentiation by transforming growth factor beta signalling pathway dph 2009-08-06T01:24:24Z biological_process owl:Class GO:1901812 biolink:NamedThing beta-carotene biosynthetic process The chemical reactions and pathways resulting in the formation of beta-carotene. tmpzr1t_l9r_go_relaxed.owl beta-carotene anabolism|beta-carotene synthesis|beta-carotene formation|beta-carotene biosynthesis yaf 2013-01-22T10:30:32Z biological_process owl:Class GO:0070789 biolink:NamedThing metula development The process whose specific outcome is the progression of metulae over time, from its formation to the mature structure. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip. tmpzr1t_l9r_go_relaxed.owl development of primary sterigmata mah 2009-07-08T01:33:46Z biological_process owl:Class GO:0031725 biolink:NamedThing CXCR6 chemokine receptor binding Binding to a CXCR6 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CXCR6 chemokine receptor ligand|bonzo receptor binding|STRL33 receptor binding molecular_function owl:Class GO:0060646 biolink:NamedThing internal mammary gland bud epithelial cell differentiation The process in which a relatively unspecialized epithelial cell of the mammary placode becomes an internal epithelial cell of the mammary gland bud. Internal cells are small and of irregular shape. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:10:48Z biological_process owl:Class GO:0071299 biolink:NamedThing cellular response to vitamin A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to retinol mah 2009-12-10T04:29:30Z biological_process owl:Class GO:0072589 biolink:NamedThing box H/ACA scaRNP complex A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs. tmpzr1t_l9r_go_relaxed.owl nucleoplasmic box H/ACA RNP pseudouridylase complex mah 2011-02-10T02:47:17Z cellular_component owl:Class GO:0047926 biolink:NamedThing geranyl-diphosphate cyclase activity Catalysis of the reaction: geranyl diphosphate = (2S)-bornyl diphosphate. tmpzr1t_l9r_go_relaxed.owl bornyl diphosphate synthase activity|bornyl pyrophosphate synthase activity|bornyl pyrophosphate synthetase activity|(+)-bornylpyrophosphate cyclase activity|(+)-bornyl-diphosphate lyase (decyclizing) EC:5.5.1.8|KEGG_REACTION:R02007|RHEA:18209|MetaCyc:GERANYL-DIPHOSPHATE-CYCLASE-RXN molecular_function owl:Class GO:0019495 biolink:NamedThing proline catabolic process to 2-oxoglutarate The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl proline catabolism to 2-ketoglutarate|proline catabolism to alpha-oxoglutarate|proline degradation to 2-oxoglutarate|proline breakdown to 2-oxoglutarate|proline catabolic process to 2-ketoglutarate|proline catabolic process to alpha-ketoglutarate|proline catabolic process to alpha-oxoglutarate|proline catabolism to alpha-ketoglutarate biological_process owl:Class GO:0035779 biolink:NamedThing angioblast cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an angioblast cell. Angioblasts are one of the two products formed from hemangioblast cells (the other being pluripotent hemopoietic stem cells). tmpzr1t_l9r_go_relaxed.owl angioblastic mesenchymal cell differentiation bf 2011-04-04T11:10:38Z biological_process owl:Class GO:0003237 biolink:NamedThing sinus venosus formation The developmental process pertaining to the initial formation of the sinus venosus from unspecified parts. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:18:34Z biological_process owl:Class GO:0046581 biolink:NamedThing intercellular canaliculus An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005315 biolink:NamedThing inorganic phosphate transmembrane transporter activity Enables the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl GO:0005317 molecular_function owl:Class GO:1903508 biolink:NamedThing positive regulation of nucleic acid-templated transcription Any process that activates or increases the frequency, rate or extent of nucleic acid-templated transcription. tmpzr1t_l9r_go_relaxed.owl up regulation of nucleic acid-templated transcription|up-regulation of nucleic acid-templated transcription|upregulation of nucleic acid-templated transcription|activation of nucleic acid-templated transcription pr 2014-10-01T14:45:04Z biological_process owl:Class GO:0031625 biolink:NamedThing ubiquitin protein ligase binding Binding to a ubiquitin protein ligase enzyme, any of the E3 proteins. tmpzr1t_l9r_go_relaxed.owl ubiquitin ligase binding molecular_function owl:Class GO:1904734 biolink:NamedThing positive regulation of electron transfer activity Any process that activates or increases the frequency, rate or extent of electron transfer activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of amicyanin|up regulation of iron-sulfur electron transfer carrier|activation of dicluster bacterial-type ferredoxin|up regulation of 2Fe-2S electron transfer carrier|activation of polyferredoxin|positive regulation of electron acceptor activity|up regulation of electron acceptor activity|up-regulation of electron transfer flavoprotein, group II|activation of electron transfer flavoprotein|activation of electron carrier, chlorophyll electron transport system|up regulation of azurin|activation of rubredoxin|upregulation of 2Fe-2S electron transfer carrier|up regulation of redox-active disulfide bond electron carrier|up regulation of thioredoxin-like 2Fe-2S ferredoxin|upregulation of monocluster bacterial-type ferredoxin|upregulation of adrenodoxin-type ferredoxin|positive regulation of electron transfer flavoprotein, group II|positive regulation of electron donor activity|up regulation of electron transporter activity|up-regulation of adrenodoxin-type ferredoxin|upregulation of bacterial-type ferredoxin|up regulation of polyferredoxin|activation of iron-sulfur electron transfer carrier|up regulation of electron transfer flavoprotein, group II|up regulation of copper electron carrier|up-regulation of dicluster bacterial-type ferredoxin|positive regulation of small blue copper electron carrier|up-regulation of mononuclear iron electron carrier|up-regulation of electron carrier, chlorophyll electron transport system|upregulation of electron transfer flavoprotein|activation of bacterial-type ferredoxin|up regulation of chloroplast-type ferredoxin|activation of thioredoxin-like 2Fe-2S ferredoxin|up-regulation of copper electron carrier|positive regulation of copper electron carrier|up-regulation of chloroplast-type ferredoxin|activation of high-potential iron-sulfur carrier|up regulation of amicyanin|positive regulation of 3Fe-4S/4Fe-4S electron transfer carrier|upregulation of electron acceptor activity|activation of electron acceptor activity|upregulation of polyferredoxin|activation of azurin|activation of electron carrier activity|up-regulation of electron donor activity|up regulation of adrenodoxin-type ferredoxin|upregulation of electron carrier activity|up regulation of rubredoxin|up regulation of high-potential iron-sulfur carrier|upregulation of amicyanin|up-regulation of electron acceptor activity|activation of electron donor activity|upregulation of electron carrier, chlorophyll electron transport system|up regulation of mononuclear iron electron carrier|positive regulation of polyferredoxin|activation of 2Fe-2S electron transfer carrier|positive regulation of rubredoxin|up-regulation of electron transporter activity|upregulation of electron transfer flavoprotein, group II|positive regulation of electron carrier, chlorophyll electron transport system|up regulation of small blue copper electron carrier|positive regulation of thioredoxin-like 2Fe-2S ferredoxin|up regulation of electron carrier, chlorophyll electron transport system|positive regulation of mononuclear iron electron carrier|positive regulation of azurin|activation of electron transfer flavoprotein, group II|up regulation of electron donor activity|positive regulation of electron transfer flavoprotein|activation of redox-active disulfide bond electron carrier|activation of adrenodoxin-type ferredoxin|positive regulation of chloroplast-type ferredoxin|up-regulation of polyferredoxin|upregulation of rubredoxin|up-regulation of rubredoxin|up-regulation of amicyanin|up-regulation of azurin|up-regulation of monocluster bacterial-type ferredoxin|positive regulation of iron-sulfur electron transfer carrier|activation of 3Fe-4S/4Fe-4S electron transfer carrier|activation of amicyanin|upregulation of 3Fe-4S/4Fe-4S electron transfer carrier|up-regulation of high-potential iron-sulfur carrier|up-regulation of thioredoxin-like 2Fe-2S ferredoxin|positive regulation of monocluster bacterial-type ferredoxin|upregulation of mononuclear iron electron carrier|positive regulation of bacterial-type ferredoxin|up regulation of bacterial-type ferredoxin|upregulation of electron transporter activity|up-regulation of 2Fe-2S electron transfer carrier|upregulation of chloroplast-type ferredoxin|positive regulation of dicluster bacterial-type ferredoxin|positive regulation of electron transfer flavoprotein, group I|positive regulation of electron transporter activity|up-regulation of redox-active disulfide bond electron carrier|up-regulation of electron transfer flavoprotein, group I|up regulation of 3Fe-4S/4Fe-4S electron transfer carrier|activation of electron transfer flavoprotein, group I|upregulation of iron-sulfur electron transfer carrier|up regulation of monocluster bacterial-type ferredoxin|upregulation of redox-active disulfide bond electron carrier|upregulation of copper electron carrier|upregulation of dicluster bacterial-type ferredoxin|upregulation of thioredoxin-like 2Fe-2S ferredoxin|upregulation of azurin|positive regulation of 2Fe-2S electron transfer carrier|activation of copper electron carrier|activation of mononuclear iron electron carrier|up-regulation of electron transfer flavoprotein|activation of electron transporter activity|up regulation of electron transfer flavoprotein, group I|upregulation of electron transfer flavoprotein, group I|upregulation of small blue copper electron carrier|up-regulation of electron carrier activity|up-regulation of bacterial-type ferredoxin|upregulation of electron donor activity|positive regulation of adrenodoxin-type ferredoxin|up regulation of electron transfer flavoprotein|up regulation of dicluster bacterial-type ferredoxin|upregulation of high-potential iron-sulfur carrier|up-regulation of iron-sulfur electron transfer carrier|activation of chloroplast-type ferredoxin|activation of monocluster bacterial-type ferredoxin|up regulation of electron carrier activity|up-regulation of 3Fe-4S/4Fe-4S electron transfer carrier|up-regulation of small blue copper electron carrier|activation of small blue copper electron carrier|positive regulation of high-potential iron-sulfur carrier|positive regulation of redox-active disulfide bond electron carrier lb 2015-10-15T07:51:32Z biological_process owl:Class GO:0017051 biolink:NamedThing retinol dehydratase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + retinol = adenosine 3',5'-bisphosphate + anhydroretinol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006228 biolink:NamedThing UTP biosynthetic process The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl UTP synthesis|UTP formation|UTP biosynthesis|UTP anabolism biological_process owl:Class GO:0046051 biolink:NamedThing UTP metabolic process The chemical reactions and pathways involving UTP, uridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl UTP metabolism biological_process owl:Class GO:0018125 biolink:NamedThing peptidyl-cysteine methylation The methylation of peptidyl-cysteine to form peptidyl-S-methyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0234 biological_process owl:Class GO:0032142 biolink:NamedThing single guanine insertion binding Binding to a double-stranded DNA region containing a single guanine insertion or a deletion that results in an unpaired guanine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903767 biolink:NamedThing sweet taste receptor complex A protein complex which is capable of sweet taste receptor activity. tmpzr1t_l9r_go_relaxed.owl rl 2014-12-22T16:49:24Z cellular_component owl:Class GO:0050933 biolink:NamedThing early stripe melanocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an early stripe melanocyte (ESM). In zebrafish, ESMs develop during the first phase (2-3 weeks of development) of the larva to adult transition (2-4 weeks of development). tmpzr1t_l9r_go_relaxed.owl early stripe melanocyte cell differentiation|early stripe melanophore differentiation biological_process owl:Class GO:1905554 biolink:NamedThing negative regulation of vessel branching Any process that stops, prevents or reduces the frequency, rate or extent of blood vessel branching. tmpzr1t_l9r_go_relaxed.owl down regulation of patterning of blood vessels|downregulation of branching involved in blood vessel morphogenesis|inhibition of branching involved in blood vessel morphogenesis|negative regulation of branching involved in blood vessel morphogenesis|down-regulation of branching involved in blood vessel morphogenesis|down-regulation of patterning of blood vessels|inhibition of patterning of blood vessels|down regulation of branching involved in blood vessel morphogenesis|downregulation of patterning of blood vessels nc 2016-10-12T14:19:41Z biological_process owl:Class GO:0039579 biolink:NamedThing suppression by virus of host ISG15-protein conjugation Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host ubiquitin-like protein ISG15 conjugation to a susbtrate. ISG15 is a ubiquitin-like protein that is conjugated to lysine residues on various target proteins. Viruses escape from the antiviral activity of ISG15 by using different mechanisms; the influenza B virus NS1 protein for instance blocks the covalent linkage of ISG15 to its target proteins by directly interacting with ISG15. The papain-like protease from the coronavirus cleaves ISG15 derivatives. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host ISG15 activity https://github.com/geneontology/go-ontology/issues/22157 bf biological_process owl:Class GO:0097705 biolink:NamedThing vascular endothelial cell response to pulsatile fluid shear stress Any response to pulsatile fluid shear stress that occurs in a vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl blood vessel endothelial cell response to pulsatile fluid shear stress pr 2016-01-27T14:22:44Z biological_process owl:Class GO:0019462 biolink:NamedThing glutamine catabolic process to fumarate, using glutaminase The chemical reactions and pathways resulting in the breakdown of glutamine into fumarate, beginning with conversion of glutamine into glutamate catalyzed by the enzyme glutaminase (EC:3.5.1.2). tmpzr1t_l9r_go_relaxed.owl glutamate catabolic process to fumarate, using glutaminase|glutamine breakdown to fumarate, using glutaminase|glutamine degradation to fumarate, using glutaminase MetaCyc:GLUTAMINDEG-PWY biological_process owl:Class GO:0090129 biolink:NamedThing positive regulation of synapse maturation Any process that increases the extent of synapse maturation, the process that organizes a synapse so that it attains its fully functional state. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:00:58Z biological_process owl:Class GO:1905360 biolink:NamedThing GTPase complex A protein complex which is capable of GTPase activity. tmpzr1t_l9r_go_relaxed.owl RASH-SOS1 complex|HRAS-SOS1 complex An example of this is HRAS in human (P01112) in PMID:9178006 (inferred from direct assay). bhm 2016-08-11T15:34:44Z cellular_component owl:Class GO:0050261 biolink:NamedThing ribose isomerase activity Catalysis of the reaction: ribofuranose = D-ribulose. tmpzr1t_l9r_go_relaxed.owl D-ribose aldose-ketose-isomerase activity|D-ribose isomerase activity|D-ribose ketol-isomerase activity RHEA:20796|KEGG_REACTION:R01081|MetaCyc:RIBOSE-ISOMERASE-RXN|EC:5.3.1.20 molecular_function owl:Class GO:0102374 biolink:NamedThing ursolic aldehyde 28-monooxygenase activity Catalysis of the reaction: ursolic aldehyde + NADPH + O2 + H+ <=> ursolic acid + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.126|MetaCyc:RXN-13502 molecular_function owl:Class GO:0047919 biolink:NamedThing GDP-mannose 6-dehydrogenase activity Catalysis of the reaction: GDP-alpha-D-mannose + H(2)O + 2 NAD(+) = GDP-D-mannuronate + 3 H(+) + 2 NADH. tmpzr1t_l9r_go_relaxed.owl GDP mannose dehydrogenase activity|guanosine diphospho-D-mannose dehydrogenase activity|guanosine diphosphomannose dehydrogenase activity|GDPmannose 6-dehydrogenase activity|GDP-D-mannose:NAD+ 6-oxidoreductase activity RHEA:21728|MetaCyc:GDP-MANNOSE-6-DEHYDROGENASE-RXN|KEGG_REACTION:R00880|EC:1.1.1.132 molecular_function owl:Class GO:1900709 biolink:NamedThing positive regulation of tensidol A biosynthetic process Any process that activates or increases the frequency, rate or extent of tensidol A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of tensidol A biosynthetic process|positive regulation of tensidol A biosynthesis|activation of tensidol A formation|positive regulation of tensidol A anabolism|activation of tensidol A anabolism|positive regulation of tensidol A synthesis|activation of tensidol A synthesis|upregulation of tensidol A biosynthetic process|up regulation of tensidol A biosynthesis|up-regulation of tensidol A anabolism|positive regulation of tensidol A formation|up regulation of tensidol A formation|upregulation of tensidol A biosynthesis|up regulation of tensidol A synthesis|activation of tensidol A biosynthesis|activation of tensidol A biosynthetic process|upregulation of tensidol A synthesis|up-regulation of tensidol A formation|up-regulation of tensidol A biosynthetic process|upregulation of tensidol A formation|up regulation of tensidol A anabolism|up-regulation of tensidol A biosynthesis|upregulation of tensidol A anabolism|up-regulation of tensidol A synthesis di 2012-05-22T05:02:12Z biological_process owl:Class GO:0046891 biolink:NamedThing peptidyl-cysteine S-carbamoylation The carbamoylation of peptidyl-cysteine to form peptidyl-S-carbamoyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0332 biological_process owl:Class GO:0052902 biolink:NamedThing spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity Catalysis of the reaction: H(2)O + O(2) + spermidine = 3-aminopropanal + H(2)O(2) + putrescine. tmpzr1t_l9r_go_relaxed.owl polyamine oxidase activity|non-specific polyamine oxidase activity|N(1)-acetylpolyamine oxidase activity MetaCyc:RXN-10461|MetaCyc:RXN-12089|EC:1.5.3.13|KEGG_REACTION:R09077|RHEA:25808|EC:1.5.3.17 molecular_function owl:Class GO:0008184 biolink:NamedThing glycogen phosphorylase activity Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:GLYCOPHOSPHORYL-RXN|Reactome:R-HSA-71590|Reactome:R-HSA-453339|Reactome:R-HSA-453358|Reactome:R-HSA-71515 molecular_function owl:Class GO:0044717 biolink:NamedThing 8-hydroxy-dADP phosphatase activity Catalysis of the reaction: 8-hydroxy-dADP + H2O = 8-hydroxy-dAMP + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2395965 jl 2012-10-18T13:33:32Z molecular_function owl:Class GO:0102199 biolink:NamedThing nitric oxide reductase activity (NAD(P)H-dependent) activity Catalysis of the reaction: dinitrogen oxide + H2O + NAD(P) = 2 nitric oxide + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12112|EC:1.7.1.14 molecular_function owl:Class GO:0018481 biolink:NamedThing 4-hydroxymuconic-semialdehyde dehydrogenase activity Catalysis of the reaction: cis,trans-4-hydroxymuconate semialdehyde + H(2)O + NAD(+) = 2 H(+) + maleylacetate + NADH. tmpzr1t_l9r_go_relaxed.owl 4-hydroxymuconic-semialdehyde:NAD+ oxidoreductase activity UM-BBD_reactionID:r0229|EC:1.2.1.61|RHEA:22420|MetaCyc:1.2.1.61-RXN|KEGG_REACTION:R05236 molecular_function owl:Class GO:0018445 biolink:NamedThing prothoracicotrophic hormone activity The action characteristic of prothoracicotrophic hormone, a peptide hormone that is secreted by the brain and, upon receptor binding, acts on the prothoracic gland to stimulate the release of ecdysone in insects. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032976 biolink:NamedThing release of matrix enzymes from mitochondria The process in which enzymes, such as aspartate aminotransferase, are enabled to move from the mitochondrial matrix into the cytosol, as part of the apoptotic process. tmpzr1t_l9r_go_relaxed.owl release of aspartate aminotransferase from mitochondria|mAST release from mitochondria Annotation to this term should be done with caution, particularly if the mechanism is not well clarified. biological_process owl:Class GO:0043158 biolink:NamedThing heterocyst differentiation The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. tmpzr1t_l9r_go_relaxed.owl heterocyst cell differentiation|heterocyst biosynthesis|heterocyst formation biological_process owl:Class GO:1990027 biolink:NamedThing S bouton Synaptic bouton found in the ventral horn of the spinal cord. S boutons range in diameter from 0.5 to 8 um and contain spherical synaptic vesicles. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_100207 pr 2013-02-06T10:35:12Z cellular_component owl:Class GO:1990699 biolink:NamedThing palmitoleyl hydrolase activity Catalysis of a hydrolase reaction that removes a palmitoleyl moiety, a 16-carbon monounsaturated fatty acid (C16:1), from some substrate. tmpzr1t_l9r_go_relaxed.owl sp 2015-03-13T09:00:05Z molecular_function owl:Class GO:0051665 biolink:NamedThing membrane raft localization Any process in which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. tmpzr1t_l9r_go_relaxed.owl lipid raft localization|establishment and maintenance of membrane raft localization|membrane raft localisation biological_process owl:Class GO:1904054 biolink:NamedThing regulation of cholangiocyte proliferation Any process that modulates the frequency, rate or extent of cholangiocyte proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of hepatoblast proliferation sl 2015-03-18T17:56:14Z biological_process owl:Class GO:0140640 biolink:NamedThing catalytic activity, acting on a nucleic acid Catalytic activity that acts to modify a nucleic acid. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21402 pg 2021-05-11T06:31:07Z molecular_function owl:Class GO:0043758 biolink:NamedThing acetate-CoA ligase (ADP-forming) activity Catalysis of the reaction: ATP + acetate + CoA = ADP + phosphate + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetate thiokinase activity|acetate--CoA ligase (ADP-forming) activity|acetyl-CoA synthetase (ADP-forming) activity|acetyl coenzyme A synthetase (adenosine diphosphate-forming)|aryl-CoA synthetase (ADP-forming) activity|acetate:CoA ligase (ADP-forming) EC:6.2.1.13|RHEA:15081|MetaCyc:ACETATE--COA-LIGASE-ADP-FORMING-RXN GO:0043762 molecular_function owl:Class GO:1902849 biolink:NamedThing positive regulation of neuronal signal transduction Any process that activates or increases the frequency, rate or extent of neuronal signal transduction. tmpzr1t_l9r_go_relaxed.owl upregulation of neuronal signal transduction|up-regulation of neuronal signal transduction|activation of neuronal signal transduction|up regulation of neuronal signal transduction sjp 2014-04-02T10:11:24Z biological_process owl:Class GO:0050437 biolink:NamedThing (-)-endo-fenchol synthase activity Catalysis of the reaction: geranyl diphosphate + H(2)O = (-)-endo-fenchol + diphosphate. tmpzr1t_l9r_go_relaxed.owl (-)-endo-fenchol cyclase activity|geranyl-diphosphate diphosphate-lyase [cyclizing, (-)-endo-fenchol-forming]|geranyl pyrophosphate:(-)-endo-fenchol cyclase activity RHEA:20565|MetaCyc:4.2.3.10-RXN|KEGG_REACTION:R02004|EC:4.2.3.10 molecular_function owl:Class GO:0042861 biolink:NamedThing achromobactin biosynthetic process The chemical reactions and pathways resulting in the formation of achromobactin, a citrate siderophore. tmpzr1t_l9r_go_relaxed.owl achromobactin anabolism|achromobactin formation|achromobactin synthesis|achromobactin biosynthesis GO:0031182|GO:0031181 biological_process owl:Class GO:0060249 biolink:NamedThing anatomical structure homeostasis A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl anatomical structure maintenance biological_process owl:Class GO:0010736 biolink:NamedThing serum response element binding Binding to a serum response element (SRE), a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. tmpzr1t_l9r_go_relaxed.owl Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. molecular_function owl:Class GO:1990846 biolink:NamedThing ribonucleoside-diphosphate reductase inhibitor activity Binds to and stops, prevents or reduces the activity of ribonucleoside-diphosphate reductase. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-04T18:13:15Z molecular_function owl:Class GO:1903033 biolink:NamedThing positive regulation of microtubule plus-end binding Any process that activates or increases the frequency, rate or extent of microtubule plus-end binding. tmpzr1t_l9r_go_relaxed.owl up regulation of microtubule plus-end binding|activation of microtubule plus-end binding|up-regulation of microtubule plus-end binding|upregulation of microtubule plus-end binding hjd 2014-05-16T18:38:38Z biological_process owl:Class GO:1903031 biolink:NamedThing regulation of microtubule plus-end binding Any process that modulates the frequency, rate or extent of microtubule plus-end binding. tmpzr1t_l9r_go_relaxed.owl hjd 2014-05-16T18:38:26Z biological_process owl:Class GO:0023022 biolink:NamedThing termination of T cell signal transduction The signaling process in which T cell signal transduction is brought to an end rather than being reversibly modulated. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z biological_process owl:Class GO:1904914 biolink:NamedThing negative regulation of establishment of protein-containing complex localization to telomere Any process that stops, prevents or reduces the frequency, rate or extent of establishment of the localization of a protein-containing macromolecular complex to a telomere. tmpzr1t_l9r_go_relaxed.owl inhibition of establishment of macromolecular complex localization to telomere|down-regulation of establishment of macromolecular complex localisation to telomere|negative regulation of establishment of macromolecular complex localisation to telomere|downregulation of establishment of macromolecular complex localization to telomere|down-regulation of establishment of macromolecular complex localization to telomere|downregulation of establishment of macromolecular complex localisation to telomere|negative regulation of establishment of macromolecular complex localization to telomere|inhibition of establishment of macromolecular complex localisation to telomere|down regulation of establishment of macromolecular complex localization to telomere|down regulation of establishment of macromolecular complex localisation to telomere rph 2016-01-19T10:38:29Z biological_process owl:Class GO:0031941 biolink:NamedThing filamentous actin A two-stranded helical polymer of the protein actin. tmpzr1t_l9r_go_relaxed.owl F-actin Wikipedia:Actin Note that this term refers only to the actin portion of a microfilament, and does not encompass associated proteins. See also the cellular component term 'actin filament ; GO:0005884'. cellular_component owl:Class GO:0047431 biolink:NamedThing 3-hydroxy-2-methylpyridine-4,5-dicarboxylate 4-decarboxylase activity Catalysis of the reaction: 5-hydroxy-6-methylpyridine-3,4-dicarboxylate + H(+) = 5-hydroxy-6-methylpyridine-3-carboxylate + CO(2). tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-2-methylpyridine-4,5-dicarboxylate 4-carboxy-lyase (3-hydroxy-2-methylpyridine-5-carboxylate-forming)|3-hydroxy-2-methylpyridine-4,5-dicarboxylate 4-carboxy-lyase activity EC:4.1.1.51|RHEA:13669|KEGG_REACTION:R03461|MetaCyc:4.1.1.51-RXN molecular_function owl:Class GO:0050465 biolink:NamedThing nitroquinoline-N-oxide reductase activity Catalysis of the reaction: 4-(hydroxyamino)quinoline N-oxide + 2 NAD(P)+ + H2O = 4-nitroquinoline N-oxide + 2 NAD(P)H + 2 H+. tmpzr1t_l9r_go_relaxed.owl NAD(P)H:4-nitroquinoline-N-oxide oxidoreductase activity|NAD(P)H2:4-nitroquinoline-N-oxide oxidoreductase activity|4NQO reductase activity|4-nitroquinoline 1-oxide reductase activity|4-(hydroxyamino)quinoline N-oxide:NADP+ oxidoreductase activity MetaCyc:1.7.1.9-RXN|EC:1.7.1.9 molecular_function owl:Class GO:0019467 biolink:NamedThing ornithine catabolic process, by decarboxylation The chemical reactions and pathways resulting in the breakdown of ornithine by decarboxylation. tmpzr1t_l9r_go_relaxed.owl ornithine breakdown, by decarboxylation|ornithine degradation, by decarboxylation MetaCyc:ORNDEG-PWY biological_process owl:Class GO:0018593 biolink:NamedThing 4-chlorophenoxyacetate monooxygenase activity Catalysis of the reaction: 4-chlorophenoxyacetate + 1/2 O2 = glyoxylate + 4-chlorophenol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0281 molecular_function owl:Class GO:0008294 biolink:NamedThing calcium- and calmodulin-responsive adenylate cyclase activity Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin. tmpzr1t_l9r_go_relaxed.owl calcium/calmodulin-responsive adenylate cyclase activity|calcium- and calmodulin-responsive adenylyl cyclase activity Reactome:R-HSA-442715|Reactome:R-HSA-111930 molecular_function owl:Class GO:0051908 biolink:NamedThing double-stranded DNA 5'-3' exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of a double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl double-stranded DNA specific 5'-3' exodeoxyribonuclease activity molecular_function owl:Class GO:0070889 biolink:NamedThing platelet alpha granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a platelet alpha granule. A platelet alpha granule is a secretory organelle found in blood platelets. tmpzr1t_l9r_go_relaxed.owl platelet alpha granule organisation|platelet alpha granule organization and biogenesis|platelet alpha-granule organization mah 2009-08-28T10:43:31Z biological_process owl:Class GO:0046169 biolink:NamedThing methanol biosynthetic process The chemical reactions and pathways resulting in the formation of methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent. tmpzr1t_l9r_go_relaxed.owl methanol synthesis|methanol anabolism|methanol biosynthesis|methanol formation biological_process owl:Class GO:0015330 biolink:NamedThing high-affinity glutamine transmembrane transporter activity Enables the transfer of glutamine from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity glutamine transmembrane transporter activity|high affinity glutamine permease activity molecular_function owl:Class GO:0050999 biolink:NamedThing regulation of nitric-oxide synthase activity Any process that modulates the activity of the enzyme nitric-oxide synthase. tmpzr1t_l9r_go_relaxed.owl regulation of NOS activity|NOS regulator|nitric-oxide synthase regulator biological_process owl:Class GO:0021567 biolink:NamedThing rhombomere 1 development The process whose specific outcome is the progression of rhombomere 1 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002588 biolink:NamedThing positive regulation of antigen processing and presentation of peptide antigen via MHC class II Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl upregulation of antigen processing and presentation of peptide antigen via MHC class II|activation of antigen processing and presentation of peptide antigen via MHC class II|positive regulation of peptide antigen processing and presentation via MHC class II|up-regulation of antigen processing and presentation of peptide antigen via MHC class II|stimulation of antigen processing and presentation of peptide antigen via MHC class II|up regulation of antigen processing and presentation of peptide antigen via MHC class II biological_process owl:Class GO:1905823 biolink:NamedThing negative regulation of mitotic sister chromatid arm separation Any process that stops, prevents or reduces the frequency, rate or extent of mitotic sister chromatid arm separation. tmpzr1t_l9r_go_relaxed.owl down regulation of mitotic sister chromatid arm separation|inhibition of mitotic sister chromatid arm separation|down-regulation of mitotic sister chromatid arm separation|downregulation of mitotic sister chromatid arm separation als 2017-01-16T13:36:38Z biological_process owl:Class GO:0046589 biolink:NamedThing ribonuclease T1 activity Catalysis of the endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides ending in Gp with 2',3'-cyclic phosphate intermediates. tmpzr1t_l9r_go_relaxed.owl ribonuclease N1|binase activity|RNase G|ribonuclease U1|ribonuclease Ch|RNase F1|guanyloribonuclease activity|ribonuclease SA|RNase N1 activity|Aspergillus oryzae ribonuclease activity|RNase N2 activity|RNase Sa|RNase T1 activity|ribonuclease N3|RNase T1|ribonuclease PP1|guanyl-specific RNase activity|ribonuclease guaninenucleotido-2'-transferase (cyclizing)|ribonuclease C2|ribonuclease F1 MetaCyc:3.1.27.3-RXN|EC:4.6.1.24 molecular_function owl:Class GO:0006086 biolink:NamedThing acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA formation from pyruvate|pyruvate dehydrogenase pathway|acetyl-CoA anabolism from pyruvate|acetyl-CoA synthesis from pyruvate MetaCyc:PYRUVDEHYD-PWY biological_process owl:Class GO:0043857 biolink:NamedThing N-acetylornithine carbamoyltransferase activity Catalysis of the reaction: N(2)-acetyl-L-ornithine + carbamoyl phosphate = N(2)-acetyl-L-citrulline + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl carbamoyl-phosphate:2-N-acetyl-L-ornithine carbamoyltransferase activity|carbamoyl-phosphate:N2-acetyl-L-ornithine carbamoyltransferase activity|acetylornithine transcarbamylase activity|N-acetylornithine transcarbamylase activity|AOTC RHEA:18609|KEGG_REACTION:R07245|EC:2.1.3.9|MetaCyc:2.1.3.9-RXN molecular_function owl:Class GO:0046725 biolink:NamedThing negative regulation by virus of viral protein levels in host cell Any process where the infecting virus reduces the levels of viral proteins in a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of viral protein levels in host cell|negative regulation of viral protein levels|downregulation of viral protein levels in host cell|down-regulation of viral protein levels in host cell|down regulation of viral protein levels in host cell biological_process owl:Class GO:0103084 biolink:NamedThing methylthiobutylmalate dehydrogenase activity Catalysis of the reaction: 3-(4'-methylthio)butylmalate <=> H+ + 2-oxo-7-methylthioheptanoate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4168 molecular_function owl:Class GO:0021624 biolink:NamedThing oculomotor nerve structural organization The process that contributes to the act of creating the structural organization of the oculomotor nerve. This process pertains to the physical shaping of a rudimentary structure. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle. tmpzr1t_l9r_go_relaxed.owl CN III structural organization|oculomotor nerve structural organisation biological_process owl:Class GO:0051469 biolink:NamedThing vesicle fusion with vacuole The joining of the lipid bilayer membrane around a vesicle with the lipid bilayer membrane around the vacuole. tmpzr1t_l9r_go_relaxed.owl heterotypic vacuole fusion, non-autophagic|heterotypic vacuole fusion (non-autophagic) GO:0042146 biological_process owl:Class GO:1903842 biolink:NamedThing response to arsenite ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenite ion stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-22T19:56:05Z biological_process owl:Class GO:0018299 biolink:NamedThing iron incorporation into the Rieske iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide The incorporation of iron into a Rieske 4Fe-4S iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into the Rieske iron-sulphur cluster via bis-L-cysteinyl bis-L-histidino diiron disulphide RESID:AA0225 biological_process owl:Class GO:0030043 biolink:NamedThing actin filament fragmentation The severing of actin filaments into numerous short fragments, usually mediated by actin severing proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072162 biolink:NamedThing metanephric mesenchymal cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the metanephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:35:00Z biological_process owl:Class GO:0033286 biolink:NamedThing ATPase-coupled ectoine transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + ectoine(out/in) = ADP + phosphate + ectoine(in/out). tmpzr1t_l9r_go_relaxed.owl ectoine transmembrane transporter activity|ATP-dependent ectoine transmembrane transporter activity|ectoine-transporting ATPase activity RHEA:32787 GO:0051471 molecular_function owl:Class GO:0061873 biolink:NamedThing regulation of hepatic stellate cell contraction Any process that modulates the frequency, rate or extent of hepatic stellate cell contraction. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:26:49Z biological_process owl:Class GO:0033780 biolink:NamedThing taurochenodeoxycholate 6alpha-hydroxylase activity Catalysis of the reactions: taurochenodeoxycholate + NADPH + H+ + O2 = taurohyocholate + NADP+ + H2O, and lithocholate + NADPH + H+ + O2 = hyodeoxycholate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl CYP3A4|taurochenodeoxycholate 6alpha-monooxygenase activity|CYP4A21|taurochenodeoxycholate,NADPH:oxygen oxidoreductase (6alpha-hydroxylating) activity MetaCyc:RXN-7977|EC:1.14.13.97|RHEA:23644 molecular_function owl:Class GO:1904674 biolink:NamedThing positive regulation of somatic stem cell population maintenance Any process that activates or increases the frequency, rate or extent of somatic stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl up regulation of somatic stem cell population maintenance|up-regulation of somatic stem cell population maintenance|activation of somatic stem cell population maintenance|upregulation of somatic stem cell population maintenance rph 2015-09-14T08:40:32Z biological_process owl:Class GO:0044323 biolink:NamedThing retinoic acid-responsive element binding Binding to a retinoic acid-responsive element, a variable direct repeat of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind. tmpzr1t_l9r_go_relaxed.owl RARE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. jl 2010-08-03T03:19:05Z molecular_function owl:Class GO:0140643 biolink:NamedThing hydroxymethylglutaryl-CoA reductase (NADH) activity Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD(+) <=> 3-hydroxy-3-methylglutaryl-CoA + 2 NADH. tmpzr1t_l9r_go_relaxed.owl beta-hydroxy-beta-methylglutaryl CoA-reductase activity|hydroxymethylglutaryl coenzyme A reductase activity|3-hydroxy-3-methylglutaryl coenzyme A reductase activity|HMG-CoA reductase activity|beta-hydroxy-beta-methylglutaryl coenzyme A reductase activity https://github.com/geneontology/go-ontology/issues/21411 RHEA:14833|EC:1.1.1.88|MetaCyc:HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN|KEGG_REACTION:R02081 Note that this activity is not present in eukaryotes, see PMID:29224355. pg 2021-05-11T16:00:35Z molecular_function owl:Class GO:0000244 biolink:NamedThing spliceosomal tri-snRNP complex assembly The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex. tmpzr1t_l9r_go_relaxed.owl spliceosomal tri-snRNP assembly|spliceosomal tri-snRNP U4/U6.U5 assembly|assembly of spliceosomal tri-snRNP|spliceosomal tri-snRNP U4atac/U6atac.U5 assembly|snRNP recycling|assembly of spliceosomal tri-snRNP U4/U6.U5|assembly of spliceosomal tri-snRNP U4atac/U6atac.U5 GO:0000351|GO:0000355 biological_process owl:Class GO:0072179 biolink:NamedThing nephric duct formation The developmental process pertaining to the initial formation of a nephric duct. A nephric duct is a tube that drains a primitive kidney. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T02:35:55Z biological_process owl:Class GO:2000887 biolink:NamedThing glucuronoarabinoxylan catabolic process The chemical reactions and pathways resulting in the breakdown of a glucuronoarabinoxylan. tmpzr1t_l9r_go_relaxed.owl glucuronoarabinoxylan catabolism jl 2011-07-28T09:39:26Z biological_process owl:Class GO:0007096 biolink:NamedThing regulation of exit from mitosis Any process involved in the progression from anaphase/telophase to G1 that is associated with a conversion from high to low mitotic CDK activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036050 biolink:NamedThing peptidyl-lysine succinylation The modification of a peptidyl-lysine residue by the addition of a succinyl group (CO-CH2-CH2-CO) to form N6-succinyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0545 bf 2011-12-12T09:51:27Z biological_process owl:Class GO:0070404 biolink:NamedThing NADH binding Binding to the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide binding|NAD (reduced) binding|reduced NAD binding molecular_function owl:Class GO:0072587 biolink:NamedThing DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activator activity Binds to and increases the activity of ATP-hydrolyzing DNA topoisomerase. DNA topoisomerase (ATP-hydrolyzing) regulator activity catalyzes a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-09T05:34:47Z molecular_function owl:Class GO:0090069 biolink:NamedThing regulation of ribosome biogenesis Any process that modulates the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-11T10:32:17Z biological_process owl:Class GO:0070642 biolink:NamedThing vitamin D5 metabolic process The chemical reactions and pathways involving vitamin D5, (1S,3Z)-3-[(2E)-2-[(1R,3aS,7aR)-1-[(1R,4S)-4-ethyl-1,5-dimethylhexyl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylene-1-cyclohexanol. tmpzr1t_l9r_go_relaxed.owl vitamin D5 metabolism mah 2009-05-08T02:47:41Z biological_process owl:Class GO:0072736 biolink:NamedThing cellular response to tert-butyl hydroperoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tert-butyl hydroperoxide (t-BOOH) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 2-methyl-prop-2-yl-hydroperoxide|cellular response to t-BOOH mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0072735 biolink:NamedThing response to tert-butyl hydroperoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tert-butyl hydroperoxide (t-BOOH) stimulus. tmpzr1t_l9r_go_relaxed.owl response to t-BOOH|response to 2-methyl-prop-2-yl-hydroperoxide mah 2012-07-17T10:33:00Z biological_process owl:Class GO:0080107 biolink:NamedThing 8-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 8-methylthiopropyl-glucosinolate = 8-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T04:30:08Z molecular_function owl:Class GO:1905346 biolink:NamedThing protein localization to cleavage furrow rim A process in which a protein is transported to, or maintained in, a location within a cleavage furrow rim. tmpzr1t_l9r_go_relaxed.owl protein localization in cleavage furrow rim|protein localisation in cleavage furrow rim|protein localisation to cleavage furrow rim mah 2016-08-01T13:20:13Z biological_process owl:Class GO:1905345 biolink:NamedThing protein localization to cleavage furrow A process in which a protein is transported to, or maintained in, a location within a cleavage furrow. tmpzr1t_l9r_go_relaxed.owl protein localisation in cleavage furrow|protein localisation to cleavage furrow|protein localization in cleavage furrow mah 2016-08-01T13:20:05Z biological_process owl:Class GO:0031833 biolink:NamedThing type 7 serotonin receptor binding Binding to a type 7 serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 7 receptor binding|type 7 serotonin receptor ligand molecular_function owl:Class GO:0008761 biolink:NamedThing UDP-N-acetylglucosamine 2-epimerase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine. tmpzr1t_l9r_go_relaxed.owl UDP-GlcNAc-2-epimerase activity|UDP-N-acetylglucosamine 2'-epimerase activity|uridine diphospho-N-acetylglucosamine 2'-epimerase activity|UDP-N-acetyl-D-glucosamine 2-epimerase activity|uridine diphosphoacetylglucosamine 2'-epimerase activity|uridine diphosphate-N-acetylglucosamine-2'-epimerase activity RHEA:17213|Reactome:R-HSA-4088338|EC:5.1.3.14|Reactome:R-HSA-4085021|MetaCyc:UDPGLCNACEPIM-RXN molecular_function owl:Class GO:0016118 biolink:NamedThing carotenoid catabolic process The chemical reactions and pathways resulting in the breakdown of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. tmpzr1t_l9r_go_relaxed.owl carotenoid degradation|carotenoid breakdown|carotenoid catabolism biological_process owl:Class GO:0036027 biolink:NamedThing protein C inhibitor-PLAU complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and urokinase-type plasminogen activator (PLAU); formation of the complex inhibits the serine protease activity of urokinase-type plasminogen activator. tmpzr1t_l9r_go_relaxed.owl protein C inhibitor-uPA complex|protein C inhibitor-urokinase-type plasminogen activator complex|SERPINA5-PLAU complex|serpin A5-PLAU complex|PCI-PLAU complex|plasma serine protease inhibitor-PLAU complex|protein C inhibitor-U-plasminogen activator complex bf 2011-10-19T01:37:03Z cellular_component owl:Class GO:0050480 biolink:NamedThing imidazolonepropionase activity Catalysis of the reaction: (S)-3-(4-oxo-4,5-dihydro-1H-imidazol-5-yl)propanoic acid + H(2)O = N-formimidoyl-L-glutamate + H(+). tmpzr1t_l9r_go_relaxed.owl imidazolone propionic acid hydrolase activity|imidazolone-5-propionate hydrolase activity|4(5)-imidazolone-5(4)-propionic acid hydrolase activity|3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate amidohydrolase activity EC:3.5.2.7|MetaCyc:IMIDAZOLONEPROPIONASE-RXN|KEGG_REACTION:R02288|RHEA:23660 molecular_function owl:Class GO:0042736 biolink:NamedThing NADH kinase activity Catalysis of the reaction: ATP + NADH = ADP + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl ATP:NADH 2'-phosphotransferase activity|reduced diphosphopyridine nucleotide kinase activity|reduced nicotinamide adenine dinucleotide kinase (phosphorylating)|DPNH kinase activity EC:2.7.1.86|RHEA:12260|KEGG_REACTION:R00105|MetaCyc:NADH-KINASE-RXN molecular_function owl:Class GO:0048906 biolink:NamedThing anterior lateral line neuromast support cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an anterior lateral line neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140358 biolink:NamedThing P-type transmembrane transporter activity Primary active transporter that auto-phosphorylates (hence P) at a key conserved aspartate residue, generating a conformational change that allows transport of the substrate. Hydrolysis of the phosphorylated Asp residue, catalyzed by the actuator (A) domain, results in another state with occluded substrates. Upon dissociation of Mg2+ and inorganic phosphate (Pi), the enzyme reverts to the initial state, in which the counter-transported substrate is released into the cytosol. tmpzr1t_l9r_go_relaxed.owl P-type ATPase|E1-E2 ATPase https://github.com/geneontology/go-ontology/issues/21273|https://github.com/geneontology/go-ontology/issues/20529 TC:3.A.3|Wikipedia:P-type_ATPase pg 2019-06-25T19:07:46Z molecular_function owl:Class GO:0102140 biolink:NamedThing heparan sulfate N-deacetylase activity Catalysis of the reaction: H2O + [heparan sulfate]-N-acetyl-alpha-D-glucosamine = acetate + H+ + [heparan sulfate]-alpha-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11557 molecular_function owl:Class GO:1902046 biolink:NamedThing positive regulation of Fas signaling pathway Any process that activates or increases the frequency, rate or extent of Fas signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of Fas receptor signaling pathway|positive regulation of Fas-FasL signaling pathway|up-regulation of FasR signaling pathway|up-regulation of CD95 signaling pathway|activation of Apo-1 signaling pathway|positive regulation of Apo-1 signaling pathway|activation of CD95 signaling pathway|upregulation of Fas-FasL signaling pathway|up regulation of Apo-1 signaling pathway|positive regulation of Fas receptor signaling pathway|up-regulation of FAS ligand-Fas signaling pathway|positive regulation of CD95 signaling pathway|activation of FasL signaling pathway|upregulation of Fas receptor signaling pathway|up-regulation of FasL signaling pathway|up regulation of Fas-FasL signaling pathway|up regulation of Fas signaling pathway|up-regulation of Fas receptor signaling pathway|upregulation of Fas signaling pathway|up-regulation of Fas signaling pathway|activation of Fas-FasL signaling pathway|upregulation of Apo-1 signaling pathway|upregulation of FasL signaling pathway|upregulation of FAS ligand-Fas signaling pathway|activation of FAS ligand-Fas signaling pathway|up regulation of FasL signaling pathway|up regulation of Fas receptor signaling pathway|up-regulation of Apo-1 signaling pathway|up regulation of FAS ligand-Fas signaling pathway|up regulation of CD95 signaling pathway|activation of FasR signaling pathway|up regulation of FasR signaling pathway|activation of Fas signaling pathway|positive regulation of FasL signaling pathway|positive regulation of FasR signaling pathway|up-regulation of Fas-FasL signaling pathway|upregulation of FasR signaling pathway|upregulation of CD95 signaling pathway|positive regulation of FAS ligand-Fas signaling pathway lb 2013-04-03T07:21:33Z biological_process owl:Class GO:0018043 biolink:NamedThing C-terminal peptidyl-isoleucine amidation The formation of a C-terminal peptidyl-isoleucine amide by hydrolysis and oxidation of an interior Ile-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0090 biological_process owl:Class GO:0030266 biolink:NamedThing quinate 3-dehydrogenase (NAD+) activity Catalysis of the reaction: (-)-quinate + NAD+ = (-)-3-dehydroquinate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl quinate:NAD(+) 5-oxidoreductase activity|quinic dehydrogenase activity|quinate:NAD 3-oxidoreductase activity|quinate:NAD 5-oxidoreductase activity|quinate:NAD(+) 3-oxidoreductase activity MetaCyc:QUINATE-5-DEHYDROGENASE-RXN|RHEA:22364|EC:1.1.1.24|EC:1.1.1.282|KEGG_REACTION:R01872 molecular_function owl:Class GO:0015160 biolink:NamedThing beta-glucan transmembrane transporter activity Enables the transfer of beta-glucans from one side of a membrane to the other. Beta-glucans are compounds composed of glucose residues linked by beta-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016243 biolink:NamedThing regulation of autophagosome size Any process that modulates the size of the autophagosome. tmpzr1t_l9r_go_relaxed.owl regulation of autophagic vacuole size biological_process owl:Class GO:0010622 biolink:NamedThing specification of ovule identity The regionalization process in which the identity of an ovule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005547 biolink:NamedThing phosphatidylinositol-3,4,5-trisphosphate binding Binding to phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions. tmpzr1t_l9r_go_relaxed.owl PIP3 binding molecular_function owl:Class GO:0018555 biolink:NamedThing phenanthrene dioxygenase activity Catalysis of the reaction: phenanthrene + NADH + H+ + O2 = NAD+ + cis-3,4-dihydroxy-3,4-dihydrophenanthrene. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0455 molecular_function owl:Class GO:0042765 biolink:NamedThing GPI-anchor transamidase complex An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxy-terminus of a precursor protein to a GPI-anchor. tmpzr1t_l9r_go_relaxed.owl GPIT complex Note that this term should not be confused with 'glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex ; GO:0000506', which represents a distinct complex with a different catalytic activity. cellular_component owl:Class GO:0033694 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl EC:1.5.7.- molecular_function owl:Class GO:1900063 biolink:NamedThing regulation of peroxisome organization Any process that modulates the frequency, rate or extent of peroxisome organization. tmpzr1t_l9r_go_relaxed.owl regulation of peroxisome organisation|regulation of peroxisome-assembly ATPase activity|regulation of peroxisome organization and biogenesis dph 2012-01-26T01:49:05Z biological_process owl:Class GO:0018252 biolink:NamedThing peptide cross-linking via L-seryl-5-imidazolinone glycine The formation of the green fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a serine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. tmpzr1t_l9r_go_relaxed.owl biosynthesis of protein-protein cross-link via L-seryl-5-imidazolinone glycine|biosynthetic process of protein-protein cross-link via L-seryl-5-imidazolinone glycine RESID:AA0184 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0099052 biolink:NamedThing vesicle scission involved in clathrin-mediated endocytosis The membrane scission process that is the final step in the formation of a clathrin-coated endocytic vesicle: separation from the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Like other vesicle scission events this involves dynamin. At least some of the dynamin recruiting factors are distinct to scission of clathrin-coated vesicles (PMID:21779028). biological_process owl:Class GO:0034431 biolink:NamedThing bis(5'-adenosyl)-hexaphosphatase activity Catalysis of the reaction: P1-P6-bis(5'-adenosyl) hexaphosphate + H2O = AMP + adenosine 5'-pentaphosphate. tmpzr1t_l9r_go_relaxed.owl AP6A hydrolase activity|AP(6)A hydrolase activity|diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase activity|AP-6-A hydrolase activity RHEA:32047 molecular_function owl:Class GO:0002397 biolink:NamedThing MHC class I protein complex assembly The aggregation, arrangement and bonding together of a set of components to form an MHC class I protein complex. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015131 biolink:NamedThing oxaloacetate transmembrane transporter activity Enables the transfer of oxaloacetate, the anion of oxobutanedioic acid, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905381 biolink:NamedThing negative regulation of snRNA transcription by RNA polymerase II Any process that stops, prevents or reduces the frequency, rate or extent of snRNA transcription mediated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl negative regulation of snRNA transcription from RNA polymerase II promoter|downregulation of snRNA transcription from Pol II promoter|down-regulation of snRNA transcription from RNA polymerase II promoter|down-regulation of snRNA transcription from Pol II promoter|negative regulation of snRNA transcription from Pol II promoter|inhibition of snRNA transcription from RNA polymerase II promoter|downregulation of snRNA transcription from RNA polymerase II promoter|inhibition of snRNA transcription from Pol II promoter|down regulation of snRNA transcription from RNA polymerase II promoter|down regulation of snRNA transcription from Pol II promoter bhm 2016-08-18T13:39:27Z biological_process owl:Class GO:0032723 biolink:NamedThing positive regulation of connective tissue growth factor production Any process that activates or increases the frequency, rate, or extent of connective tissue growth factor production. tmpzr1t_l9r_go_relaxed.owl positive regulation of Hcs24 production|activation of connective tissue growth factor production|positive regulation of Fisp12 production|positive regulation of CTGF production|positive regulation of CCN2 production|positive regulation of hypertrophic chondrocyte-specific gene product 24 production|up-regulation of connective tissue growth factor production|positive regulation of connective tissue growth factor biosynthetic process|upregulation of connective tissue growth factor production|positive regulation of IGFBP8 production|up regulation of connective tissue growth factor production|stimulation of connective tissue growth factor production GO:0045422 biological_process owl:Class GO:0032643 biolink:NamedThing regulation of connective tissue growth factor production Any process that modulates the frequency, rate, or extent of connective tissue growth factor production. tmpzr1t_l9r_go_relaxed.owl regulation of connective tissue growth factor biosynthetic process|regulation of CCN2 production|regulation of Fisp12 production|regulation of CTGF production|regulation of IGFBP8 production|regulation of Hcs24 production|regulation of hypertrophic chondrocyte-specific gene product 24 production GO:0045420 biological_process owl:Class GO:0009404 biolink:NamedThing toxin metabolic process The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. tmpzr1t_l9r_go_relaxed.owl toxin metabolism biological_process owl:Class GO:0050021 biolink:NamedThing L-arabinonolactonase activity Catalysis of the reaction: L-arabinono-1,4-lactone + H(2)O = L-arabinonate + H(+). tmpzr1t_l9r_go_relaxed.owl L-arabinono-1,4-lactone lactonohydrolase activity MetaCyc:L-ARABINONOLACTONASE-RXN|EC:3.1.1.15|KEGG_REACTION:R02526|RHEA:16217 molecular_function owl:Class GO:0072059 biolink:NamedThing cortical collecting duct development The process whose specific outcome is the progression of the cortical collecting duct over time, from its formation to the mature structure. The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:07:07Z biological_process owl:Class GO:0002497 biolink:NamedThing proteasomal proteolysis associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein by the proteasome complex contributing to antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034930 biolink:NamedThing 1-hydroxypyrene sulfotransferase activity Catalysis of the reaction: 1-hydroxypyrene + XSO3- = 1-pyrenylsulfate + HX. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0952 molecular_function owl:Class GO:0034692 biolink:NamedThing E.F.G complex A protein complex that comprises three core spliceosomal proteins, designated E, F, and G. Formation of the E.F.G complex is essential but not sufficient for the formation of a stable U1 snRNP complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004039 biolink:NamedThing allophanate hydrolase activity Catalysis of the reaction: H(2)O + 3 H(+) + urea-1-carboxylate = 2 CO(2) + 2 NH(4)(+). tmpzr1t_l9r_go_relaxed.owl allophanate lyase activity|urea-1-carboxylate amidohydrolase activity UM-BBD_reactionID:r0848|MetaCyc:ALLOPHANATE-HYDROLASE-RXN|RHEA:19029|EC:3.5.1.54|KEGG_REACTION:R00005 molecular_function owl:Class GO:0150163 biolink:NamedThing miRNA-mediated activation of transcription by RNA polymerase II Any process mediated by a microRNA (miRNA) that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl bc 2020-01-14T12:08:14Z biological_process owl:Class GO:0002897 biolink:NamedThing positive regulation of central B cell tolerance induction Any process that activates or increases the frequency, rate, or extent of central B cell tolerance induction. tmpzr1t_l9r_go_relaxed.owl up-regulation of central B cell tolerance induction|upregulation of central B cell tolerance induction|stimulation of central B cell tolerance induction|up regulation of central B cell tolerance induction|activation of central B cell tolerance induction biological_process owl:Class GO:0097036 biolink:NamedThing regulation of plasma membrane sterol distribution Any process that modulates the proportions or spatial arrangement of sterols in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl pr 2011-04-08T02:08:08Z biological_process owl:Class GO:0002203 biolink:NamedThing proteolysis by cytosolic proteases associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein by cytosolic resident proteases during antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl Note that a separate term covers proteolysis by the proteasome complex (proteasomal proteolysis associated with antigen processing and presentation ; GO:0002497). biological_process owl:Class GO:0045517 biolink:NamedThing interleukin-20 receptor binding Binding to an interleukin-20 receptor. tmpzr1t_l9r_go_relaxed.owl IL-20|interleukin-20 receptor ligand molecular_function owl:Class GO:0004503 biolink:NamedThing tyrosinase activity Catalysis of the reaction: L-tyrosine + O2 = L-DOPAquinone + H2O. This reaction can use both monophenols (such as tyrosine) and catechols (o-diphenols) as substrates. tmpzr1t_l9r_go_relaxed.owl monophenol monooxygenase activity|phenol oxidase activity|phenolase activity|N-acetyl-6-hydroxytryptophan oxidase activity|o-diphenol:O2 oxidoreductase activity|cresolase activity|catecholase|chlorogenic acid oxidase activity|monophenol oxidase activity|pyrocatechol oxidase|dopa oxidase|chlorogenic oxidase activity|o-diphenol oxidoreductase|monophenol monooxidase activity|prophenol oxidase activity|L-tyrosine monooxygenase activity|tyrosine-dopa oxidase activity|monophenol oxygenase|monophenolase activity|prophenoloxidase activity|o-diphenol oxidase activity https://github.com/geneontology/go-ontology/issues/21024#issuecomment-909025243 MetaCyc:MONOPHENOL-MONOOXYGENASE-RXN|EC:1.14.18.1 In mammals, L-DOPA can act as a cofactor for the catalyzed reaction; therefore in some resources L-DOPA is shown on both sides of the reaction. GO:0004503 describes the monooxygenation of the monophenol, L-tyrosine. For oxidation of diphenols (including L-DOPA and dopamine), consider instead the term 'catechol oxidase activity ; GO:0004097' and its children. molecular_function owl:Class GO:0071957 biolink:NamedThing old mitotic spindle pole body The spindle pole body that exists in a cell prior to spindle pole body duplication. An old spindle pole body segregates to the daughter cell upon mitosis, and lacks active proteins involved in signaling exit from mitosis. tmpzr1t_l9r_go_relaxed.owl old SPB mah 2011-06-01T02:32:10Z cellular_component owl:Class GO:0047601 biolink:NamedThing acetate kinase (diphosphate) activity Catalysis of the reaction: acetate + diphosphate = acetyl phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl acetate kinase (pyrophosphate) activity|diphosphate:acetate phosphotransferase activity|pyrophosphate-acetate phosphotransferase activity KEGG_REACTION:R00320|RHEA:24276|MetaCyc:ACETATE-KINASE-PYROPHOSPHATE-RXN|EC:2.7.2.12 molecular_function owl:Class GO:0033802 biolink:NamedThing isoliquiritigenin 2'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + isoliquiritigenin = 2'-O-methylisoliquiritigenin + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:isoliquiritigenin 2'-O-methyltransferase activity|CHMT|chalcone OMT EC:2.1.1.154|MetaCyc:RXN-3501|KEGG_REACTION:R07242|RHEA:21608 molecular_function owl:Class GO:0001945 biolink:NamedThing lymph vessel development The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006254 biolink:NamedThing CTP catabolic process The chemical reactions and pathways resulting in the breakdown of CTP, cytidine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl CTP catabolism|CTP hydrolysis|CTP breakdown|CTP degradation biological_process owl:Class GO:0032728 biolink:NamedThing positive regulation of interferon-beta production Any process that activates or increases the frequency, rate, or extent of interferon-beta production. tmpzr1t_l9r_go_relaxed.owl stimulation of interferon-beta production|positive regulation of interferon-beta secretion|activation of interferon-beta production|positive regulation of interferon-beta biosynthetic process|upregulation of interferon-beta production|up-regulation of interferon-beta production|up regulation of interferon-beta production|positive regulation of IFN-beta production GO:0045359|GO:0035549 biological_process owl:Class GO:0120289 biolink:NamedThing positive regulation of aspartic endopeptidase activity, intramembrane cleaving Any process that increases the frequency, rate or extent of intramembrane cleaving aspartic-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20341 krc 2020-11-19T22:27:57Z biological_process owl:Class GO:0106162 biolink:NamedThing mRNA N-acetyltransferase activity Catalysis of the reaction: a cytidine in mRNA + acetyl-CoA + ATP + H2O = ADP + an N(4)-acetylcytidine in mRNA + CoA + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:58480 hjd 2018-12-18T19:19:06Z molecular_function owl:Class GO:0120174 biolink:NamedThing stress-induced homeostatically regulated protein degradation pathway A stress-inducible protein catabolic pathway that promotes protein quality control by accelerating the degradation of misfolded ER membrane and cytosolic proteins, as well as native proteins. The pathway starts with the activation, by stress, of the Nma111p/Ynm3p serine protease, which cleaves the stress-induced hydrophilin Roq1p, resulting in the generation of a Roq1p cleavage product that selectively interacts with Ubr1p, an E3 ubiquitin ligase. Interaction with the Ubr1p type-1 substrate binding site reprograms the substrate specificity of this ubiquitin ligase resulting in the selective proteasome-mediated degradation of misfolded and native proteins. The pathway ends with degradation of the protein by the cytoplasmic proteasome. Currently, NMA111, ROQ1, UBR1, RAD6, and CDC48 are considered to be involved in this quality control pathway. tmpzr1t_l9r_go_relaxed.owl SHRED pathway Note, although the SHRED pathway may contain some components in common with ER-associated protein degradation (ERAD) pathways (GO:0036503), such as UBR1, RAD6 and CDC48, other ERAD components, such as HRD1 and DOA10 do not appear to be involved, and as such these pathways are currently considered to be distinct. ERAD pathways target misfolded ER lumenal proteins (ERAD-L), ER membrane proteins (ERAD-M) and ER proteins with misfolded cytosolic domains (ERAD-C) by recognizing aberrant proteins, retrotranslocating these substrates to the cytosol, followed by subsequent substrate ubiquitination and proteosome-mediated degradation. In contrast the SHRED pathway, although inducible by stress, targets diverse ER membrane and cytosolic proteins as well as numerous other native proteins in the absence of stress. In the SHRED pathway an Nma111p serine protease-mediated cleavage results in the generation of a Roq1p fragment that then binds to the type-1 active site of Ubr1p, altering its substrate specificity, and leading to the proteasome-mediated degradation of both misfolded and native proteins. SHRED is also considered to be distinct from the endoplasmic reticulum unfolded protein response (GO:0030968), a process by which ER stress activates the ER membrane protein Ire1p, resulting in splicing of the HAC1 mRNA, followed by Hac1p-mediated up-regulation of UPR genes. Induction of SHRED does not require IRE1 or HAC1, and as such is currently considered to be distinct. krc 2018-06-07T16:16:43Z biological_process owl:Class GO:0090532 biolink:NamedThing L-ascorbic acid biosynthetic process via UDP-alpha-D-glucuronate The chemical reactions and pathways resulting in the formation of L-ascorbic acid via the intermediate UDP-alpha-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl L-ascorbic acid biosynthesis via UDP-alpha-D-glucuronate This pathway occurs in most vertebrates, although not in guinea pigs and primates, including humans. tb 2013-02-06T15:31:01Z biological_process owl:Class GO:1990948 biolink:NamedThing ubiquitin ligase inhibitor activity Binds to and stops, prevents or reduces the activity of a ubiquitin ligase. tmpzr1t_l9r_go_relaxed.owl mitotic anaphase-promoting complex inhibitor activity|APC-Cdc20 complex inhibitor activity vw 2016-04-21T16:36:54Z GO:0090645|GO:0061637 molecular_function owl:Class GO:0015593 biolink:NamedThing allose transmembrane transporter activity Enables the transfer of allose from one side of a membrane to the other. Allose is an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042208 biolink:NamedThing propylene catabolic process The chemical reactions and pathways resulting in the breakdown of propylene, an alkene produced by catalytic or thermal cracking of hydrocarbons or as a by-product of petroleum refining. tmpzr1t_l9r_go_relaxed.owl propylene degradation|propylene breakdown|propylene catabolism UM-BBD_pathwayID:pro biological_process owl:Class GO:1902995 biolink:NamedThing positive regulation of phospholipid efflux Any process that activates or increases the frequency, rate or extent of phospholipid efflux. tmpzr1t_l9r_go_relaxed.owl up regulation of phospholipid export|activation of phospholipid export|activation of phospholipid efflux|positive regulation of phospholipid export|up-regulation of phospholipid efflux|upregulation of phospholipid export|up regulation of phospholipid efflux|up-regulation of phospholipid export|upregulation of phospholipid efflux sjp 2014-05-08T14:55:22Z biological_process owl:Class GO:0097652 biolink:NamedThing phosphatidylinositol 3-kinase complex, class II A phosphatidylinositol 3-kinase complex that contains a catalytic subunit of a phosphatidylinositol 3-kinase (PI3K) enzyme and one or more adaptor proteins. There is no known obligatory regulatory subunit. The class II PI3K (PI3KC2) subfamily of genes has members in vertebrates, worm and fly, but none in yeast. tmpzr1t_l9r_go_relaxed.owl class II PI3K complex|class II phosphatidylinositol 3-kinase complex pr 2014-09-16T13:14:17Z cellular_component owl:Class GO:1903171 biolink:NamedThing carbon dioxide homeostasis Any process involved in the maintenance of an internal steady state of carbon dioxide within an organism or cell. tmpzr1t_l9r_go_relaxed.owl mr 2014-07-11T20:58:24Z biological_process owl:Class GO:0006613 biolink:NamedThing cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation. The transport of most secretory proteins, particularly those with more than 100 amino acids, into the endoplasmic reticulum lumen occurs in this manner, as does the import of some proteins into mitochondria. tmpzr1t_l9r_go_relaxed.owl cotranslational protein-membrane targeting|cotranslational membrane targeting|cotranslational protein membrane targeting biological_process owl:Class GO:0030095 biolink:NamedThing chloroplast photosystem II An integral chloroplast membrane complex containing the P680 reaction center. In the light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060507 biolink:NamedThing epidermal growth factor receptor signaling pathway involved in lung development The series of molecular signals generated as a consequence of an epidermal growth factor-type receptor binding to one of its physiological ligands. This process contributes to lung development. tmpzr1t_l9r_go_relaxed.owl epidermal growth factor receptor signalling pathway involved in lung development biological_process owl:Class GO:0070391 biolink:NamedThing response to lipoteichoic acid Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoteichoic acid stimulus; lipoteichoic acid is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl response to LTA biological_process owl:Class GO:0051008 biolink:NamedThing Hsp27 protein binding Binding to Hsp27 proteins, a lightweight heat shock protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061590 biolink:NamedThing calcium activated phosphatidylcholine scrambling The movement of a population of phosphatidylcholine molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-05T15:23:03Z biological_process owl:Class GO:0048842 biolink:NamedThing positive regulation of axon extension involved in axon guidance Any process that activates, maintains or increases the frequency, rate or extent of axon extension involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl stimulation of axon extension involved in axon guidance|up regulation of axon extension involved in axon guidance|up-regulation of axon extension involved in axon guidance|upregulation of axon extension involved in axon guidance|activation of axon extension involved in axon guidance biological_process owl:Class GO:0102356 biolink:NamedThing isoitalicene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> diphosphoric acid + (+)-isoitalicene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13373 molecular_function owl:Class GO:1903260 biolink:NamedThing protein localization to mating projection tip A process in which a protein is transported to, or maintained in, a location within a mating projection tip. tmpzr1t_l9r_go_relaxed.owl protein localization to shmoo tip|protein localization in mating projection tip|protein localisation to mating projection tip|protein localisation in mating projection tip|protein localization to conjugation tube tip mah 2014-08-06T13:26:14Z biological_process owl:Class GO:0072051 biolink:NamedThing juxtaglomerular apparatus development The process whose specific outcome is the progression of the juxtaglomerular apparatus over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure that lies adjacent to the glomerulus and regulates kidney function. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:52:23Z biological_process owl:Class GO:1902108 biolink:NamedThing regulation of mitochondrial membrane permeability involved in apoptotic process Any regulation of mitochondrial membrane permeability that is involved in apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial membrane permeability involved in apoptotic program|regulation of transport across mitochondrial membrane involved in apoptosis|regulation of transport across mitochondrial membrane involved in type I programmed cell death|regulation of transport across mitochondrial membrane involved in apoptotic program|regulation of transport across mitochondrial membrane involved in signaling (initiator) caspase activity|regulation of mitochondrial membrane permeability involved in apoptotic programmed cell death|regulation of mitochondrial membrane permeability involved in type I programmed cell death|regulation of mitochondrial membrane permeability involved in programmed cell death by apoptosis|regulation of transport across mitochondrial membrane involved in apoptotic cell death|regulation of transport across mitochondrial membrane involved in apoptotic process|regulation of transport across mitochondrial membrane involved in programmed cell death by apoptosis|regulation of transport across mitochondrial membrane involved in apoptotic programmed cell death|regulation of mitochondrial membrane permeability involved in apoptotic cell death|regulation of mitochondrial membrane permeability involved in signaling (initiator) caspase activity|regulation of mitochondrial membrane permeability involved in apoptosis pr 2013-05-03T12:09:35Z biological_process owl:Class GO:0044063 biolink:NamedThing modulation by symbiont of host nervous system process The alteration by a symbiont organism of the functioning of a host neurophysiological process, an organ system process carried out by any of the organs or tissues of neurological system. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host neurological system process|modulation by symbiont of host neurological system process biological_process owl:Class GO:0097262 biolink:NamedThing eoxin D4 synthase activity Catalysis of the reaction: eoxin C4 = eoxin D4 + 5-L-glutamyl amino acid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161945 pr 2012-03-08T03:01:00Z molecular_function owl:Class GO:0099517 biolink:NamedThing synaptic vesicle transport along microtubule The directed movement of synaptic vesicles along microtubules within a cell, powered by molecular motors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099514 biolink:NamedThing synaptic vesicle cytoskeletal transport The directed movement of synaptic vesicles along cytoskeletal fibers such as microfilaments or microtubules within a cell, powered by molecular motors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014881 biolink:NamedThing regulation of myofibril size Any process that modulates the size of myofibrils. A myofibril is the contractile element of skeletal and cardiac muscle. It is a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. tmpzr1t_l9r_go_relaxed.owl change of myofibril size biological_process owl:Class GO:0044873 biolink:NamedThing lipoprotein localization to membrane A process in which a lipoprotein is transported to, or maintained in, a specific location in a membrane. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-25T16:28:43Z biological_process owl:Class GO:0048463 biolink:NamedThing carpel structural organization The process that contributes to the act of creating the structural organization of the carpel. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl carpel structural organisation GO:0048432 biological_process owl:Class GO:0003746 biolink:NamedThing translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-192704|Reactome:R-HSA-192841 GO:0008183|GO:0008182 molecular_function owl:Class GO:0034194 biolink:NamedThing D-galactonate catabolic process The chemical reactions and pathways resulting in the breakdown of D-galactonate, the anion of D-galactonic acid. tmpzr1t_l9r_go_relaxed.owl D-galactonate degradation|D-galactonate breakdown|D-galactonate catabolism MetaCyc:GALACTCAT-PWY biological_process owl:Class GO:0034192 biolink:NamedThing D-galactonate metabolic process The chemical reactions and pathways involving D-galactonate, the anion of D-galactonic acid. tmpzr1t_l9r_go_relaxed.owl D-galactonate metabolism biological_process owl:Class GO:0047761 biolink:NamedThing butyrate kinase activity Catalysis of the reaction: ATP + butanoate = ADP + butanoyl phosphate + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:butanoate 1-phosphotransferase activity KEGG_REACTION:R01688|EC:2.7.2.7|RHEA:13585|MetaCyc:BUTYRATE-KINASE-RXN molecular_function owl:Class GO:1990788 biolink:NamedThing GLI-SUFU complex A protein repressing GLI's transcription factor activity when SMO signalling is inactive. Upon ligand binding to the upstream receptor PTC (Patched) GLI dissociates from SUFU and activates transcription of hedgehog-target genes. In mammals it consists of SUFU and one of the GLI family proteins. tmpzr1t_l9r_go_relaxed.owl An example of this is SUFU in human (Q9UMX1) in PMID:24311597 (inferred from direct assay). bhm 2015-06-26T13:49:47Z cellular_component owl:Class GO:0033052 biolink:NamedThing cyanoamino acid metabolic process The chemical reactions and pathways involving cyanoamino acids, amino acid derivatives that contain a cyanide group. tmpzr1t_l9r_go_relaxed.owl cyanoamino acid metabolism biological_process owl:Class GO:0102640 biolink:NamedThing paspalinine synthase activity Catalysis of the reaction: paspalicine + O2 + NADPH + H+ <=> paspalinine + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15738 molecular_function owl:Class GO:0021592 biolink:NamedThing fourth ventricle development The process whose specific outcome is the progression of the fourth ventricle over time, from its formation to the mature structure. The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044803 biolink:NamedThing multi-organism membrane organization A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane, involving more than one organism. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-10T15:11:41Z biological_process owl:Class GO:0070196 biolink:NamedThing eukaryotic translation initiation factor 3 complex assembly The aggregation, arrangement and bonding together of a set of components to form the eukaryotic translation initiation factor 3 complex. tmpzr1t_l9r_go_relaxed.owl eIF-3 assembly|eIF3 assembly biological_process owl:Class GO:0004506 biolink:NamedThing squalene monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl squalene,NADPH:oxygen oxidoreductase (2,3-epoxidizing) activity|squalene 2,3-oxidocyclase activity|squalene-2,3-epoxide cyclase activity|squalene hydroxylase activity|squalene oxydocyclase activity|squalene-2,3-epoxidase activity|squalene epoxidase activity KEGG_REACTION:R02874|EC:1.14.14.17|RHEA:25282|MetaCyc:SQUALENE-MONOOXYGENASE-RXN|Reactome:R-HSA-191299 molecular_function owl:Class GO:0061765 biolink:NamedThing modulation by virus of host NIK/NF-kappaB cascade Any process in which a virus effect a change in the frequency, rate or extent of NIK/NF-kappaB signaling in the host. tmpzr1t_l9r_go_relaxed.owl modulation by virus of host NIK/NF-kappaB signaling dph 2016-04-19T10:41:22Z biological_process owl:Class GO:0102981 biolink:NamedThing 4-hydroxy-5-methyl-2-propyl-3(2H)-furanone oxidoreductase activity Catalysis of the reaction: 4-hydroxy-5-methyl-2-propyl-3(2H)-furanone + NADP <=> (2E)-4-hydroxy-5-methyl-2-propylidene-3(2H)-furanone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9567 molecular_function owl:Class GO:1900302 biolink:NamedThing positive regulation of laminarabiose transport Any process that activates or increases the frequency, rate or extent of laminarabiose transport. tmpzr1t_l9r_go_relaxed.owl up-regulation of laminarabiose transport|upregulation of laminarabiose transport|up regulation of laminarabiose transport|activation of laminarabiose transport tt 2012-04-05T07:57:37Z biological_process owl:Class GO:0018680 biolink:NamedThing deethylatrazine monooxygenase activity Catalysis of the reaction: 2 deethylatrazine + O2 = 2 CH3COCH3 + 2 deisopropyldeethylatrazine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0128|EC:1.14.15.- molecular_function owl:Class GO:0071029 biolink:NamedThing nuclear ncRNA surveillance The set of processes involved in identifying and degrading defective or aberrant ncRNAs within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear aberrant ncRNA catabolic process|nuclear ncRNA quality control krc 2009-07-28T04:22:31Z biological_process owl:Class GO:0035285 biolink:NamedThing appendage segmentation Division of an appendage, an organ or part that is attached to the main body of an organism, into a series of semi-repetitive parts or segments. Most arthropod appendages, such as the legs and antennae, are visibly segmented. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2000165 biolink:NamedThing regulation of planar cell polarity pathway involved in pericardium morphogenesis Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in pericardium morphogenesis. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-05T01:07:36Z biological_process owl:Class GO:0003390 biolink:NamedThing dendrite development by retrograde extension The progression of a dendrite over time by the attachment of a part of the neuron to an anchor and the subsequent migration of the cell body away from the anchor point. tmpzr1t_l9r_go_relaxed.owl dendrite retrograde extension dph 2009-12-09T09:25:24Z biological_process owl:Class GO:0052657 biolink:NamedThing guanine phosphoribosyltransferase activity Catalysis of the reaction: GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl guanosine phosphoribosyltransferase activity|Transphosphoribosidase activity|guanylic pyrophosphorylase activity|GPRT|6-mercaptopurine phosphoribosyltransferase activity|6-hydroxypurine phosphoribosyltransferase activity|purine-6-thiol phosphoribosyltransferase activity|guanosine 5'-phosphate pyrophosphorylase activity|guanine-hypoxanthine phosphoribosyltransferase activity|GMP pyrophosphorylase activity|guanylate pyrophosphorylase activity|hypoxanthine-guanine phosphoribosyltransferase activity RHEA:25424|KEGG_REACTION:R01229|EC:2.4.2.8|MetaCyc:GUANPRIBOSYLTRAN-RXN molecular_function owl:Class GO:2001127 biolink:NamedThing methane biosynthetic process from formic acid The chemical reactions and pathways resulting in the formation of a methane from a formic acid. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T09:54:03Z biological_process owl:Class GO:0098915 biolink:NamedThing membrane repolarization during ventricular cardiac muscle cell action potential The process in which ions are transported across a membrane such that the ventricular cardiomyocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential. tmpzr1t_l9r_go_relaxed.owl regulation of ventricular cardiac muscle repolarization|electrocardiogram T wave|ventricular repolarization biological_process owl:Class GO:0019570 biolink:NamedThing L-arabinose catabolic process to 2-oxoglutarate The chemical reactions and pathways resulting in the breakdown of L-arabinose into other compounds, including 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl L-arabinose catabolic process to 2-ketoglutarate|L-arabinose catabolic process to alpha-oxoglutarate|L-arabinose catabolism to alpha-oxoglutarate|L-arabinose degradation to 2-oxoglutarate|L-arabinose catabolic process to alpha-ketoglutarate|L-arabinose catabolism to 2-ketoglutarate|L-arabinose breakdown to 2-oxoglutarate|L-arabinose catabolism to alpha-ketoglutarate biological_process owl:Class GO:0000966 biolink:NamedThing RNA 5'-end processing Any process involved in forming the mature 5' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl RNA 5' end processing biological_process owl:Class GO:0047958 biolink:NamedThing glycine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: glycine + 2-oxoglutarate = glyoxylate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl glutamic-glyoxylic transaminase activity|glutamate-glyoxylate transaminase activity|glycine aminotransferase activity|glyoxylate-glutamate aminotransferase activity|glycine transaminase activity|glyoxylate-glutamic transaminase activity|L-glutamate:glyoxylate aminotransferase activity EC:2.6.1.4|MetaCyc:GLYCINE-AMINOTRANSFERASE-RXN|RHEA:14089 molecular_function owl:Class GO:0042140 biolink:NamedThing late meiotic recombination nodule assembly During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during pachytene. Involved in the catalysis crossing over. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905003 biolink:NamedThing picolinic acid metabolic process The chemical reactions and pathways involving picolinic acid. tmpzr1t_l9r_go_relaxed.owl picolinate metabolism|picolinic acid metabolism bf 2016-03-01T14:06:28Z biological_process owl:Class GO:0051638 biolink:NamedThing barbed-end actin filament uncapping The removal of capping protein from the barbed (or plus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. tmpzr1t_l9r_go_relaxed.owl plus-end F-actin uncapping|barbed end actin filament uncapping|plus end F-actin uncapping|plus end actin filament uncapping|barbed-end F-actin uncapping|plus-end actin filament uncapping|barbed end F-actin uncapping biological_process owl:Class GO:1903875 biolink:NamedThing corticosterone binding Binding to corticosterone. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:02:35Z molecular_function owl:Class GO:0106029 biolink:NamedThing tRNA pseudouridine synthase activity Catalysis of the reaction: tRNA uridine = tRNA pseudouridine. Conversion of uridine in a tRNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. tmpzr1t_l9r_go_relaxed.owl transfer ribonucleate pseudouridine synthetase activity|tRNA pseudouridine(31) synthase|tRNA pseudouridylate synthase I activity|tRNA pseudouridine(55) synthase|tRNA pseudouridine(32) synthase|tRNA-pseudouridine synthase activity|transfer RNA pseudouridine synthetase activity|tRNA pseudouridine(38-40) synthase|Mitochondrial tRNA pseudouridine(27/28) synthase|tRNA-uridine uracilmutase activity|tRNA pseudouridine(13) synthase|tRNA pseudouridine(38/39) synthase|tRNA-pseudouridine synthase I activity|tRNA-uridine isomerase activity|tRNA pseudouridine(65) synthase EC:5.4.99.27|EC:5.4.99.42|RHEA:22376|EC:5.4.99.45|EC:5.4.99.26|EC:5.4.99.28|MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN|EC:5.4.99.12|EC:5.4.99.25|EC:5.4.99.44 hjd 2017-06-26T17:37:30Z molecular_function owl:Class GO:0002570 biolink:NamedThing somatic diversification of immunoglobulin genes by N region addition The addition of variable numbers of random nucleotides by terminal deoxytransferase in the N regions of heavy chain immunoglobulin genes. N regions are found at the V-D and D-J recombinational junctions. tmpzr1t_l9r_go_relaxed.owl somatic diversification of antibody genes by N region addition biological_process owl:Class GO:0034105 biolink:NamedThing positive regulation of tissue remodeling Any process that activates or increases the frequency, rate, or extent of tissue remodeling. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106334 biolink:NamedThing 3'-deoxyribose phosphate lyase activity Catalysis of the conversion of a 3'-deoxyribose phosphate in DNA to a 3'-phosphate. tmpzr1t_l9r_go_relaxed.owl 3'-dRP lyase|3'-dRP lyase activity hjd 2020-10-20T19:04:24Z molecular_function owl:Class GO:0015818 biolink:NamedThing isoleucine transport The directed movement of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-isoleucine transport biological_process owl:Class GO:0098691 biolink:NamedThing dopaminergic synapse A synapse that uses dopamine as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dos 2017-03-07T14:51:52Z cellular_component owl:Class GO:0102438 biolink:NamedThing laricitrin 4'-O-methyltransferase activity Catalysis of the reaction: laricitrin(1-) + S-adenosyl-L-methionine <=> H+ + 3',4'-dimethylmyricetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13914 molecular_function owl:Class GO:0003039 biolink:NamedThing detection of reduced oxygen by carotid body chemoreceptor signaling The process in which information about the levels of oxygen are received and are converted to a molecular signal by chemoreceptors in a carotid body. tmpzr1t_l9r_go_relaxed.owl detection of reduced oxygen by carotid body chemoreceptor signalling biological_process owl:Class GO:0003020 biolink:NamedThing detection of reduced oxygen by chemoreceptor signaling The process in which information about the levels of oxygen are received and are converted to a molecular signal by chemoreceptors in the carotid bodies and the aortic bodies. tmpzr1t_l9r_go_relaxed.owl detection of reduced oxygen by chemoreceptor signalling biological_process owl:Class GO:0000006 biolink:NamedThing high-affinity zinc transmembrane transporter activity Enables the transfer of zinc ions (Zn2+) from one side of a membrane to the other, probably powered by proton motive force. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity zinc uptake transmembrane transporter activity|high affinity zinc uptake transmembrane transporter activity molecular_function owl:Class GO:0001523 biolink:NamedThing retinoid metabolic process The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity. tmpzr1t_l9r_go_relaxed.owl retinoid metabolism biological_process owl:Class GO:0060718 biolink:NamedThing chorionic trophoblast cell differentiation The process in which relatively unspecialized cells of the ectoplacental cone acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T02:48:27Z biological_process owl:Class GO:1903413 biolink:NamedThing cellular response to bile acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bile acid stimulus. tmpzr1t_l9r_go_relaxed.owl rl 2014-09-03T12:45:51Z biological_process owl:Class GO:0090249 biolink:NamedThing regulation of cell migration involved in somitogenic axis elongation Any process that modulates the frequency, rate, or extent of the controlled self-propelled movement of a cell that contributes to somitogenic axis elongation. tmpzr1t_l9r_go_relaxed.owl regulation of cell motility involved in somitogenic axis elongation https://github.com/geneontology/go-annotation/issues/2040 tb 2010-01-22T11:20:05Z biological_process owl:Class GO:0052728 biolink:NamedThing capsorubin synthase activity Catalysis of the reaction: violaxanthin = capsorubin. tmpzr1t_l9r_go_relaxed.owl violaxanthin-capsorubin isomerase (ketone-forming) activity|CCS|capsanthin-capsorubin synthase activity|ketoxanthophyll synthase activity MetaCyc:RXN-7946|EC:5.3.99.8|RHEA:21752 ai 2011-08-16T03:09:26Z molecular_function owl:Class GO:0042793 biolink:NamedThing plastid transcription The synthesis of RNA from a plastid DNA template, usually by a specific plastid RNA polymerase. tmpzr1t_l9r_go_relaxed.owl transcription from plastid promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0015705 biolink:NamedThing iodide transport The directed movement of iodide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031918 biolink:NamedThing positive regulation of synaptic metaplasticity A process that increases synaptic metaplasticity. Metaplasticity is a higher-order form of plasticity and is manifest as a change in the ability to induce subsequent synaptic plasticity that is the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl activation of synaptic metaplasticity|up-regulation of synaptic metaplasticity|up regulation of synaptic metaplasticity|upregulation of synaptic metaplasticity|stimulation of synaptic metaplasticity biological_process owl:Class GO:0044594 biolink:NamedThing 17-beta-hydroxysteroid dehydrogenase (NAD+) activity Catalysis of the reaction: a 17-beta-hydroxysteroid + NAD+ = a 17-oxosteroid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:24612 jl 2012-04-26T04:49:13Z molecular_function owl:Class GO:0015312 biolink:NamedThing polyamine:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + polyamine(in) = H+(in) + polyamine(out). tmpzr1t_l9r_go_relaxed.owl polyamine:hydrogen antiporter activity molecular_function owl:Class GO:0070525 biolink:NamedThing tRNA threonylcarbamoyladenosine metabolic process The chemical reactions and pathways involving tRNA threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules. tmpzr1t_l9r_go_relaxed.owl t6A metabolic process|t6A metabolism|threonylcarbamoyladenosine metabolism biological_process owl:Class GO:0018832 biolink:NamedThing halohydrin hydrogen-halide-lyase B activity Catalysis of the elimination of HCl from a chloropropanol, yielding an epoxypropane. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0050 molecular_function owl:Class GO:0019181 biolink:NamedThing halohydrin hydrogen-halide-lyase activity Catalysis of the reaction: a halohydrin = an epoxide + a hydrogen halide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008463 biolink:NamedThing formylmethionine deformylase activity Catalysis of the reaction: N-formyl-L-methionine + H(2)O = L-methionine + formate. tmpzr1t_l9r_go_relaxed.owl N-formyl-L-methionine amidohydrolase activity RHEA:17781|KEGG_REACTION:R00653|EC:3.5.1.31|MetaCyc:FORMYLMETHIONINE-DEFORMYLASE-RXN molecular_function owl:Class GO:0002650 biolink:NamedThing negative regulation of tolerance induction to self antigen Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction to self antigen. tmpzr1t_l9r_go_relaxed.owl inhibition of tolerance induction to self antigen|downregulation of tolerance induction to self antigen|down regulation of tolerance induction to self antigen|down-regulation of tolerance induction to self antigen biological_process owl:Class GO:0044020 biolink:NamedThing histone methyltransferase activity (H4-R3 specific) Catalysis of the reaction: S-adenosyl-L-methionine + (histone H4)-arginine (position 3) = S-adenosyl-L-homocysteine + (histone H4)-N-methyl-arginine (position 3). This reaction is the addition of a methyl group to arginine at position 3 of histone H4. tmpzr1t_l9r_go_relaxed.owl histone-arginine N-methyltransferase activity (H4-R3 specific)|histone methylase activity (H4-R3 specific) molecular_function owl:Class GO:0022877 biolink:NamedThing protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + fructose(out) = protein histidine + fructose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl fructose PTS transporter activity molecular_function owl:Class GO:1990235 biolink:NamedThing diamine N-acetyltransferase complex A protein complex which is capable of diamine N-acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl SAT tetramer|spermidine acetyltransferase complex|SAT complex bhm 2013-11-13T16:29:45Z cellular_component owl:Class GO:2000970 biolink:NamedThing regulation of detection of glucose Any process that modulates the frequency, rate or extent of detection of glucose. tmpzr1t_l9r_go_relaxed.owl regulation of glucose sensing|regulation of glucose perception|regulation of glucose detection vk 2011-08-02T10:18:52Z biological_process owl:Class GO:0036335 biolink:NamedThing intestinal stem cell homeostasis Any biological process involved in the maintenance of the steady-state number of intestinal stem cells within a population of cells. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-05T10:23:41Z biological_process owl:Class GO:2000255 biolink:NamedThing negative regulation of male germ cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of male germ cell proliferation. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-18T09:29:47Z biological_process owl:Class GO:0005043 biolink:NamedThing netrin receptor activity involved in chemorepulsion Combining with a netrin signal and transmitting the signal from one side of the membrane to the other to contribute to the directed movement of a motile cell away from a higher concentration of netrin. tmpzr1t_l9r_go_relaxed.owl repulsive netrin receptor activity|netrin receptor activity involved in negative chemotaxis molecular_function owl:Class GO:0005042 biolink:NamedThing netrin receptor activity Combining with a netrin signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051431 biolink:NamedThing corticotropin-releasing hormone receptor 2 binding Binding to a corticotropin-releasing hormone receptor type 2 (CRHR2). The CRHR2 has several splice variants that are located in sub-cortical areas of the brain and in the periphery. tmpzr1t_l9r_go_relaxed.owl CRHR2 binding|type 2 corticotropin-releasing factor receptor binding|type 2 corticotropin releasing factor receptor ligand|type 2 corticotropin releasing factor receptor binding GO:0031744 molecular_function owl:Class GO:0014872 biolink:NamedThing myoblast division The process resulting in the physical partitioning and separation of a myoblast into daughter cells. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043929 biolink:NamedThing primary ovarian follicle growth involved in double layer follicle stage Increase in size of primary follicles including oocyte growth and granulosa and/or theca cell proliferation until more than one layer of granulosa cells is present (preantral follicle), as part of the double layer follicle stage of oogenesis. tmpzr1t_l9r_go_relaxed.owl primary ovarian follicle growth during double layer follicle stage biological_process owl:Class GO:0097553 biolink:NamedThing calcium ion transmembrane import into cytosol A process in which a calcium ion is transported from one side of a membrane to the other into the cytosol by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl calcium transmembrane import into cytosol pr 2014-01-23T11:05:13Z biological_process owl:Class GO:0047582 biolink:NamedThing 4-methyleneglutaminase activity Catalysis of the reaction: 4-methylene-L-glutamine + H(2)O = 4-methylene-L-glutamate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 4-methyleneglutamine amidohydrolase activity|4-methyleneglutamine deamidase activity|4-methylene-L-glutamine amidohydrolase activity KEGG_REACTION:R02712|RHEA:14741|EC:3.5.1.67|MetaCyc:4-METHYLENEGLUTAMINASE-RXN molecular_function owl:Class GO:0035501 biolink:NamedThing MH1 domain binding Binding to a MH1 (MAD homology 1) protein domain. The MH1 domain is found at the amino terminus of MAD related proteins such as Smads and can mediate DNA binding in some proteins. Smads also use the MH1 domain to interact with some transcription factors. tmpzr1t_l9r_go_relaxed.owl MAD homology 1 domain binding bf 2010-04-29T03:17:27Z molecular_function owl:Class GO:0010931 biolink:NamedThing macrophage tolerance induction A process involving any mechanism for tolerance induction in macrophages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110017 biolink:NamedThing cap-independent translational initiation of linear mRNA The process where translation initiation recruits the 40S ribosomal subunits in a cap and 5' end independent fashion before an AUG codon is encountered in an appropriate sequence context to initiate linear mRNA translation. tmpzr1t_l9r_go_relaxed.owl kmv 2017-06-08T15:13:55Z biological_process owl:Class GO:0033835 biolink:NamedThing flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase activity Catalysis of the reaction: UDP-L-rhamnose + a flavanone 7-O-glucoside = UDP + a flavanone 7-O-[beta-L-rhamnosyl-(1->2)-beta-D-glucoside]. tmpzr1t_l9r_go_relaxed.owl UDP-L-rhamnose:flavanone-7-O-glucoside 2''-O-beta-L-rhamnosyltransferase activity|UDP-rhamnose:flavanone-7-O-glucoside-2''-O-rhamnosyltransferase activity|1->2 UDP-rhamnosyltransferase activity MetaCyc:RXN-5002|MetaCyc:RXN-7759|MetaCyc:RXN-5004|EC:2.4.1.236|MetaCyc:RXN-9699|RHEA:15473|MetaCyc:RXN-5001 molecular_function owl:Class GO:1990725 biolink:NamedThing cord factor receptor activity Combining with a cord factor, an M. tuberculosis cell wall glycolipid, and transmitting a signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl TMD receptor activity|trehalose 6,6'-dimycolate receptor activity Wikipedia:Cord_factor hjd 2015-04-07T20:53:31Z molecular_function owl:Class GO:0051629 biolink:NamedThing inhibition of epinephrine uptake Any process that prevents the activation of the directed movement of epinephrine into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of epinephrine import|inhibition of adrenaline uptake biological_process owl:Class GO:0061529 biolink:NamedThing epinephrine secretion, neurotransmission The regulated release of epinephrine by a cell in which the epinephrine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl adrenaline secretion, neurotransmission dph 2013-06-21T15:47:22Z biological_process owl:Class GO:0018579 biolink:NamedThing protocatechuate 4,5-dioxygenase activity Catalysis of the reaction: protocatechuate + O2 = 4-carboxy-2-hydroxymuconate semialdehyde. tmpzr1t_l9r_go_relaxed.owl protocatechuic 4,5-dioxygenase activity|protocatechuate 4,5-oxygenase activity|protocatechuate:oxygen 4,5-oxidoreductase (decyclizing)|protocatechuic 4,5-oxygenase activity UM-BBD_reactionID:r0144|RHEA:24044|MetaCyc:PROTOCATECHUATE-45-DIOXYGENASE-RXN|EC:1.13.11.8 molecular_function owl:Class GO:0032904 biolink:NamedThing negative regulation of nerve growth factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of nerve growth factor (NGF). tmpzr1t_l9r_go_relaxed.owl negative regulation of NGF production|inhibition of nerve growth factor production|down-regulation of nerve growth factor production|downregulation of nerve growth factor production|down regulation of nerve growth factor production biological_process owl:Class GO:0103057 biolink:NamedThing gibberellin A19, 2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A19 + O2 + 2-oxoglutarate <=> H+ + gibberellin A20 + 2 carbon dioxide + succinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-169 molecular_function owl:Class GO:0010146 biolink:NamedThing fructan biosynthetic process The chemical reactions and pathways resulting in the formation of fructan a polysaccharide consisting of fructose residues. tmpzr1t_l9r_go_relaxed.owl fructan formation|levan biosynthesis|fructan biosynthesis|fructan synthesis|levan biosynthetic process|fructan anabolism MetaCyc:PWY-822 biological_process owl:Class GO:0014812 biolink:NamedThing muscle cell migration The orderly movement of a muscle cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004730 biolink:NamedThing pseudouridylate synthase activity Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl pseudouridine monophosphate synthetase activity|pseudouridylic acid synthetase activity|uracil hydro-lyase (adding D-ribose 5-phosphate; pseudouridine-5'-phosphate-forming)|uracil hydro-lyase (adding D-ribose 5-phosphate)|pseudouridine monophosphate synthase activity|pseudouridylate synthetase activity|uracil hydrolyase activity|5-ribosyluracil 5-phosphate synthetase activity|psiUMP synthetase activity|pseudouridine-5'-phosphate glycosidase activity EC:4.2.1.70|RHEA:18337|KEGG_REACTION:R01055|MetaCyc:PSEUDOURIDYLATE-SYNTHASE-RXN Note that this term should not be confused with 'pseudouridine synthase activity ; GO:0009982', which refers to the intramolecular isomerization of uridine to pseudouridine. molecular_function owl:Class GO:1904418 biolink:NamedThing regulation of telomeric loop formation Any process that modulates the frequency, rate or extent of telomeric loop formation. tmpzr1t_l9r_go_relaxed.owl regulation of t-loop formation|regulation of t-loop biosynthesis nc 2015-07-01T10:40:24Z biological_process owl:Class GO:0009673 biolink:NamedThing low-affinity phosphate transmembrane transporter activity Enables the transfer of phosphate from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity phosphate transmembrane transporter activity molecular_function owl:Class GO:0031496 biolink:NamedThing positive regulation of mating type switching Any process that activates or increases the frequency, rate or extent of mating type switching. tmpzr1t_l9r_go_relaxed.owl stimulation of mating type switching|activation of mating type switching|upregulation of mating type switching|up regulation of mating type switching|up-regulation of mating type switching biological_process owl:Class GO:0039532 biolink:NamedThing negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl negative regulation of viral-induced cytoplasmic pattern recognition receptor signalling pathway|negative regulation of cytoplasmic pattern recognition receptor signaling pathway in response to virus|negative regulation of MAVS signaling bf 2012-01-03T11:14:48Z biological_process owl:Class GO:0035229 biolink:NamedThing positive regulation of glutamate-cysteine ligase activity Any process that activates or increases the activity of glutamate-cysteine ligase, typically by lowering its sensitivity to inhibition by glutathione and by increasing its affinity for glutamate. tmpzr1t_l9r_go_relaxed.owl up-regulation of glutamate-cysteine ligase activity|stimulation of glutamate-cysteine ligase activity|upregulation of glutamate-cysteine ligase activity|up regulation of glutamate-cysteine ligase activity|activation of glutamate-cysteine ligase activity biological_process owl:Class GO:0033521 biolink:NamedThing phytyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of phytyl diphosphate, (2E)-3,7,11,15-tetramethylhexadec-2-en-1-yl trihydrogen diphosphate. tmpzr1t_l9r_go_relaxed.owl phytyl diphosphate anabolism|phytyl diphosphate formation|phytyl diphosphate biosynthesis|phytyl diphosphate synthesis MetaCyc:PWY-5063 biological_process owl:Class GO:0033424 biolink:NamedThing CCG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CCG codon. tmpzr1t_l9r_go_relaxed.owl proline tRNA Note that in the standard genetic code, CCG codes for proline. molecular_function owl:Class GO:0070693 biolink:NamedThing P-TEFb-cap methyltransferase complex A protein complex that is formed by the association of positive transcription elongation factor complex b (P-TEFb) with the mRNA capping methyltransferase. tmpzr1t_l9r_go_relaxed.owl P-TEFb-Pcm1 complex|Cdk9-Pcm1 complex mah 2009-06-04T02:38:58Z cellular_component owl:Class GO:0005175 biolink:NamedThing CD27 receptor binding Binding to a CD27, a receptor found on the surface of T cells and some B cells and NK cells. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009274 biolink:NamedThing peptidoglycan-based cell wall A protective structure outside the cytoplasmic membrane composed of peptidoglycan (also known as murein), a molecule made up of a glycan (sugar) backbone of repetitively alternating N-acetylglucosamine and N-acetylmuramic acid with short, attached, cross-linked peptide chains containing unusual amino acids. An example of this component is found in Escherichia coli. tmpzr1t_l9r_go_relaxed.owl murein sacculus|peptidoglycan|envelope cellular_component owl:Class GO:0039507 biolink:NamedThing suppression by virus of host molecular function Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host protein. tmpzr1t_l9r_go_relaxed.owl inhibition of host protein function|negative regulation by virus of host molecular function|inhibition by virus of host protein function|down-regulation by virus of host protein function|negative regulation by virus of host protein function|down regulation by virus of host protein function bf 2011-06-02T02:47:03Z biological_process owl:Class GO:0070675 biolink:NamedThing hypoxanthine oxidase activity Catalysis of the reaction: hypoxanthine + H2O + O2 = xanthine + H2O2. tmpzr1t_l9r_go_relaxed.owl hypoxanthine:oxygen oxidoreductase activity|hypoxanthine:O2 oxidoreductase activity|schardinger enzyme|hypoxanthine-xanthine oxidase activity|xanthine oxidoreductase activity|Schardinger enzyme activity|hypoxanthine:O(2) oxidoreductase activity mah 2009-05-29T01:12:55Z molecular_function owl:Class GO:0070466 biolink:NamedThing alpha2-beta1 integrin-alpha3(VI) complex A protein complex that consists of an alpha2-beta1 integrin complex bound to a type VI collagen triple helix containing an alpha3(VI) chain. tmpzr1t_l9r_go_relaxed.owl ITGA2-ITGB1-COL6A3 complex cellular_component owl:Class GO:0080179 biolink:NamedThing 1-methylguanosine metabolic process The chemical reactions and pathways involving 1-methylguanosine. tmpzr1t_l9r_go_relaxed.owl dhl 2011-04-28T04:38:13Z biological_process owl:Class GO:1900067 biolink:NamedThing regulation of cellular response to alkaline pH Any process that modulates the frequency, rate or extent of cellular response to alkalinity. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to alkalinity|regulation of cellular response to basic pH pr 2012-01-26T02:34:59Z biological_process owl:Class GO:0035572 biolink:NamedThing N-terminal peptidyl-serine dimethylation The dimethylation of the N-terminal serine of proteins to form the derivative N,N-dimethylserine. tmpzr1t_l9r_go_relaxed.owl bf 2010-08-06T02:00:17Z biological_process owl:Class GO:0097664 biolink:NamedThing SCF-Grr1/Pof2 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Grr1 in S. cerevisiae (Pof2 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:27:10Z cellular_component owl:Class GO:0120214 biolink:NamedThing negative regulation of histidine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of histidine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of histidine biosynthetic process|inhibition of histidine biosynthetic process|down regulation of histidine formation|down-regulation of histidine anabolism|inhibition of histidine synthesis|downregulation of histidine biosynthesis|down regulation of histidine biosynthesis|downregulation of histidine formation|down-regulation of histidine biosynthesis|downregulation of histidine synthesis|downregulation of histidine anabolism|inhibition of histidine anabolism|down-regulation of histidine biosynthetic process|negative regulation of histidine anabolism|negative regulation of histidine formation|inhibition of histidine biosynthesis|negative regulation of histidine synthesis|down-regulation of histidine synthesis|downregulation of histidine biosynthetic process|down regulation of histidine anabolism|negative regulation of histidine biosynthesis|down regulation of histidine synthesis|down-regulation of histidine formation|inhibition of histidine formation krc 2019-06-27T20:56:35Z biological_process owl:Class GO:0019629 biolink:NamedThing propionate catabolic process, 2-methylcitrate cycle The chemical reactions and pathways resulting in the breakdown of propionate that occurs in the 2-methylcitrate cycle. tmpzr1t_l9r_go_relaxed.owl propionate degradation, 2-methylcitrate cycle|propionate breakdown, 2-methylcitrate cycle biological_process owl:Class GO:0071919 biolink:NamedThing G-quadruplex DNA formation A DNA metabolic process that results in the formation of G-quadruplex DNA structures, in which groups of four guanines adopt a flat, cyclic Hoogsteen hydrogen-bonding arrangement known as a guanine tetrad or G-quartet. The stacking of several layers of G-quartets forms G-quadruplexes, in which one or more DNA single strands are assembled in parallel and/or antiparallel, with interactions that can be either intra- or intermolecular in nature. tmpzr1t_l9r_go_relaxed.owl G quadruplex DNA formation|G-quartet DNA formation|G quartet DNA formation mah 2010-09-24T10:57:43Z biological_process owl:Class GO:1905753 biolink:NamedThing positive regulation of argininosuccinate synthase activity Any process that activates or increases the frequency, rate or extent of argininosuccinate synthase activity. tmpzr1t_l9r_go_relaxed.owl activation of arginosuccinate synthetase activity|up regulation of L-citrulline:L-aspartate ligase (AMP-forming)|activation of argininosuccinate synthase activity|positive regulation of argininosuccinate synthetase activity|up-regulation of argininosuccinic acid synthetase activity|up regulation of arginine succinate synthetase activity|up regulation of arginosuccinate synthetase activity|activation of L-citrulline:L-aspartate ligase (AMP-forming)|positive regulation of L-citrulline:L-aspartate ligase (AMP-forming)|up regulation of argininosuccinate synthetase activity|positive regulation of arginosuccinate synthetase activity|up-regulation of argininosuccinate synthase activity|up-regulation of citrulline--aspartate ligase activity|positive regulation of citrulline--aspartate ligase activity|positive regulation of argininosuccinic acid synthetase activity|activation of citrulline--aspartate ligase activity|up regulation of citrulline--aspartate ligase activity|upregulation of argininosuccinate synthase activity|up-regulation of L-citrulline:L-aspartate ligase (AMP-forming)|upregulation of arginine succinate synthetase activity|activation of argininosuccinic acid synthetase activity|activation of arginine succinate synthetase activity|positive regulation of arginine succinate synthetase activity|activation of argininosuccinate synthetase activity|up regulation of argininosuccinate synthase activity|upregulation of L-citrulline:L-aspartate ligase (AMP-forming)|up regulation of argininosuccinic acid synthetase activity|up-regulation of argininosuccinate synthetase activity|upregulation of arginosuccinate synthetase activity|upregulation of argininosuccinic acid synthetase activity|up-regulation of arginosuccinate synthetase activity|upregulation of argininosuccinate synthetase activity|up-regulation of arginine succinate synthetase activity|upregulation of citrulline--aspartate ligase activity dos 2016-12-12T11:44:09Z biological_process owl:Class GO:0045221 biolink:NamedThing negative regulation of FasL production Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL. tmpzr1t_l9r_go_relaxed.owl down-regulation of FasL biosynthetic process|inhibition of FasL biosynthetic process|negative regulation of FasL anabolism|down regulation of FasL biosynthetic process|negative regulation of FasL formation|downregulation of FasL biosynthetic process|negative regulation of FasL biosynthesis|negative regulation of FasL biosynthetic process|negative regulation of FasL synthesis biological_process owl:Class GO:0002145 biolink:NamedThing 4-amino-5-hydroxymethyl-2-methylpyrimidine diphosphatase activity Catalysis of the reaction: 4-amino-5-hydroxymethyl-2-methylpyrimidine pyrophosphate + H2O = hydroxymethylpyrimidine phosphate + phosphate + H(+). tmpzr1t_l9r_go_relaxed.owl HMP-PP pyrophosphatase|HMP-PP diphosphatase RHEA:27914|MetaCyc:RXN0-3543 hjd 2009-06-10T11:21:35Z molecular_function owl:Class GO:0150060 biolink:NamedThing amylin receptor 2 signaling pathway A series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 2 (AMY2), a G protein-coupled receptor complex, on the surface of the target cell. The AMY2 signaling pathway can also be initiated by adrenomedullin (AM/ADM). tmpzr1t_l9r_go_relaxed.owl AMY2 signaling pathway bc 2018-06-21T11:00:22Z biological_process owl:Class GO:1990575 biolink:NamedThing mitochondrial L-ornithine transmembrane transport The process in which L-ornithine is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial ornithine transport|mitochondrial ornithine transmembrane transport mah 2014-12-05T11:29:49Z GO:0000066 biological_process owl:Class GO:0047883 biolink:NamedThing ethanolamine oxidase activity Catalysis of the reaction: ethanolamine + H2O + O2 = glycolaldehyde + NH3 + H2O2. tmpzr1t_l9r_go_relaxed.owl ethanolamine:oxygen oxidoreductase (deaminating) MetaCyc:ETHANOLAMINE-OXIDASE-RXN|EC:1.4.3.8|RHEA:18581 molecular_function owl:Class GO:0044682 biolink:NamedThing archaeal-specific GTP cyclohydrolase activity Catalysis of the reaction: GTP + H2O <=> 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate + diphosphate +formate + H+. This activity is part of the biosynthesis of methanopterin in Archaea, and requires Fe2+. tmpzr1t_l9r_go_relaxed.owl Fe(2+)-dependent archaeal-specific GTP cyclohydrolase activity|MptA activity jl 2012-08-15T11:18:40Z molecular_function owl:Class GO:0006336 biolink:NamedThing DNA replication-independent chromatin assembly The formation of chromatin outside the context of DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication-independent nucleosome assembly|transcription-coupled nucleosome assembly https://github.com/geneontology/go-ontology/issues/22130 biological_process owl:Class GO:0055078 biolink:NamedThing sodium ion homeostasis Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001766 biolink:NamedThing membrane raft polarization The clustering and aggregation of a membrane into domains. This serves as a mechanism to compartmentalize cellular activities and to establish cell polarity. tmpzr1t_l9r_go_relaxed.owl membrane polarization|lipid raft polarization https://github.com/geneontology/go-ontology/issues/20666 biological_process owl:Class GO:0071963 biolink:NamedThing establishment or maintenance of cell polarity regulating cell shape Any cellular process that results in the specification, formation or maintenance of a polarized intracellular organization or cell growth patterns that regulate the shape of a cell. tmpzr1t_l9r_go_relaxed.owl mah 2011-06-21T03:47:21Z biological_process owl:Class GO:0097336 biolink:NamedThing response to risperidone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a risperidone stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:04:31Z biological_process owl:Class GO:0050010 biolink:NamedThing isovitexin beta-glucosyltransferase activity Catalysis of the reaction: isovitexin + UDP-D-glucose = H(+) + isovitexin 2''-O-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucose-isovitexin 2''-glucosyltransferase activity|isovitexin b-glucosyltransferase activity|UDP-glucose:isovitexin 2''-O-beta-D-glucosyltransferase activity|UDPglucose:isovitexin 2''-O-beta-D-glucosyltransferase activity MetaCyc:ISOVITEXIN-BETA-GLUCOSYLTRANSFERASE-RXN|KEGG_REACTION:R03686|EC:2.4.1.106|RHEA:19529 molecular_function owl:Class GO:0072326 biolink:NamedThing vulval cell fate determination The process in which a cell becomes capable of differentiating autonomously into a nematode vulval cell regardless of its environment; upon determination, the cell fate cannot be reversed. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed adult vulva, which is the egg-laying organ of female and hermaphrodite nematodes. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-01T02:04:46Z biological_process owl:Class GO:1990515 biolink:NamedThing 3' transitive RNA interference An RNA interference where the silencing signal spreads 3' along the target mRNA, outside of the initial target sequence. Typically involves the formation of secondary siRNAs formed when the initial mRNA target sequence functions as a template for 5' to 3' synthesis of new dsRNA. tmpzr1t_l9r_go_relaxed.owl jl 2014-10-09T15:31:01Z biological_process owl:Class GO:0036453 biolink:NamedThing transitive RNA interference An RNA interference where the silencing signal spreads along the target mRNA in a 5' or 3' direction, outside of the initial target sequence. tmpzr1t_l9r_go_relaxed.owl transitive RNAi bf 2013-11-07T11:14:03Z biological_process owl:Class GO:0017032 biolink:NamedThing amino acid:potassium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + K+(out) = amino acid(in) + K+(in). tmpzr1t_l9r_go_relaxed.owl potassium:amino acid symporter activity molecular_function owl:Class GO:0019705 biolink:NamedThing protein-cysteine S-myristoyltransferase activity Catalysis of the transfer of a myristoyl (systematic name, tetradecanoyl) group to a sulfur atom on a cysteine residue of a protein molecule in the reaction: tetradecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-tetradecanoyl-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl RHEA:59736 molecular_function owl:Class GO:0045092 biolink:NamedThing interleukin-18 receptor complex A protein complex that binds interleukin-18; comprises an alpha and a beta subunit. tmpzr1t_l9r_go_relaxed.owl IL-18 receptor complex cellular_component owl:Class GO:0035041 biolink:NamedThing sperm DNA decondensation Unwinding of the condensed nuclear chromatin of an inactive sperm nucleus. tmpzr1t_l9r_go_relaxed.owl sperm chromatin decondensation biological_process owl:Class GO:1903684 biolink:NamedThing regulation of border follicle cell migration Any process that modulates the frequency, rate or extent of border follicle cell migration. tmpzr1t_l9r_go_relaxed.owl regulation of border cell migration als 2014-12-01T13:35:39Z biological_process owl:Class GO:0006043 biolink:NamedThing glucosamine catabolic process The chemical reactions and pathways resulting in the breakdown of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin. tmpzr1t_l9r_go_relaxed.owl glucosamine degradation|chitosamine catabolic process|glucosamine breakdown|chitosamine catabolism|glucosamine catabolism MetaCyc:GLUAMCAT-PWY biological_process owl:Class GO:0051548 biolink:NamedThing negative regulation of keratinocyte migration Any process that stops, prevents, or reduces the frequency, rate or extent of keratinocyte migration. tmpzr1t_l9r_go_relaxed.owl down regulation of keratinocyte migration|downregulation of keratinocyte migration|down-regulation of keratinocyte migration|inhibition of keratinocyte migration biological_process owl:Class GO:1900839 biolink:NamedThing positive regulation of fumigaclavine C biosynthetic process Any process that activates or increases the frequency, rate or extent of fumigaclavine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of fumigaclavine C biosynthetic process|up-regulation of fumigaclavine C biosynthetic process|up regulation of fumigaclavine C biosynthetic process di 2012-06-07T09:36:52Z biological_process owl:Class GO:0006175 biolink:NamedThing dATP biosynthetic process The chemical reactions and pathways resulting in the formation of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate). tmpzr1t_l9r_go_relaxed.owl dATP biosynthesis|dATP anabolism|dATP synthesis|dATP formation biological_process owl:Class GO:0048065 biolink:NamedThing male courtship behavior, veined wing extension The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behaviour, wing extension|male courtship behavior, wing extension|male courtship behaviour, veined wing extension biological_process owl:Class GO:0006809 biolink:NamedThing nitric oxide biosynthetic process The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. tmpzr1t_l9r_go_relaxed.owl nitric oxide formation|nitric oxide biosynthesis|nitric oxide synthesis|nitric oxide anabolism biological_process owl:Class GO:0004934 biolink:NamedThing mating-type alpha-factor pheromone receptor activity Combining with the mating-type alpha-factor pheromone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl class D G protein coupled receptor activity|class D G-protein-coupled receptor activity|class D GPCR activity|class D G-protein coupled receptor activity molecular_function owl:Class GO:0030989 biolink:NamedThing dynein-driven meiotic oscillatory nuclear movement Oscillatory movement of the nucleus involved in meiosis I. This oscillatory movement is led by an astral microtubule array emanating from the spindle pole body, and driven by the microtubule motor cytoplasmic dynein. tmpzr1t_l9r_go_relaxed.owl horsetail nuclear movement|HNM|horsetail movement Dynein-driven meiotic oscillatory nuclear movement precedes meiotic recombination. biological_process owl:Class GO:0004449 biolink:NamedThing isocitrate dehydrogenase (NAD+) activity Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide isocitrate dehydrogenase activity|NAD dependent isocitrate dehydrogenase activity|NAD-linked isocitrate dehydrogenase activity|NAD isocitrate dehydrogenase activity|isocitrate dehydrogenase (NAD) activity|isocitrate:NAD+ oxidoreductase (decarboxylating)|NAD-specific isocitrate dehydrogenase activity|NAD isocitric dehydrogenase activity MetaCyc:ISOCITRATE-DEHYDROGENASE-NAD+-RXN|EC:1.1.1.41|Reactome:R-HSA-70967|RHEA:23632 molecular_function owl:Class GO:0004448 biolink:NamedThing isocitrate dehydrogenase activity Catalysis of the reaction: isocitrate + acceptor = 2-oxoglutarate + CO2 + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl oxalsuccinic decarboxylase activity|IDP1|isocitric dehydrogenase activity|isocitric acid dehydrogenase activity|IDP2|oxalosuccinate decarboxylase activity|IDH activity|IDP3|oxalosuccinate carboxylase activity|beta-ketoglutaric-isocitric carboxylase activity|IDP activity MetaCyc:ISOCITDEH-RXN molecular_function owl:Class GO:0031421 biolink:NamedThing invertasome A complex formed by a recombinase, a regulatory protein, and the DNA sequences bound by each protein; catalyzes a reversible site-specific recombination reaction that results in the alternate expression of one or more genes in various contexts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004974 biolink:NamedThing leukotriene receptor activity Combining with a leukotriene to initiate a change in cell activity. Leukotrienes are pharmacologically active substances with a set of three conjugated double bonds; some contain a peptide group based on cysteine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033277 biolink:NamedThing abortive mitotic cell cycle A cell cycle in which mitosis is begun and progresses normally through the end of anaphase, but not completed, resulting in a cell with increased ploidy. tmpzr1t_l9r_go_relaxed.owl abortive mitosis Note that this term should be used only for abortive mitotic events that occur normally, e.g. during megakaryocyte differentiation; it should not be used for incomplete mitosis resulting from mutation or other abnormal occurrences. Note that this term should not be confused with 'endomitotic cell cycle ; GO:0007113', which describes a process in which no mitotic spindle forms. biological_process owl:Class GO:0047728 biolink:NamedThing carnitine 3-dehydrogenase activity Catalysis of the reaction: carnitine + NAD(+) = 3-dehydrocarnitine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl carnitine:NAD+ 3-oxidoreductase activity KEGG_REACTION:R02395|RHEA:19265|EC:1.1.1.108|MetaCyc:CARNITINE-3-DEHYDROGENASE-RXN molecular_function owl:Class GO:0018597 biolink:NamedThing ammonia monooxygenase activity Catalysis of the oxidation of alkanes (up to C8) to alcohols and alkenes (up to C5) to epoxides and alcohols in the presence of ammonium ions. tmpzr1t_l9r_go_relaxed.owl EC:1.14.99.39|RHEA:27341|UM-BBD_enzymeID:e0061 molecular_function owl:Class GO:0047294 biolink:NamedThing phosphoglycerol geranylgeranyltransferase activity Catalysis of the reaction: sn-glycerol 1-phosphate + all-trans-geranylgeranyl diphosphate = sn-3-O-(geranylgeranyl)glycerol 1-phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl-transferase activity|geranylgeranyl diphosphate:sn-glyceryl phosphate geranylgeranyltransferase activity|glycerol phosphate geranylgeranyltransferase activity RHEA:23404|MetaCyc:2.5.1.41-RXN|KEGG_REACTION:R04158|EC:2.5.1.41 molecular_function owl:Class GO:1903965 biolink:NamedThing monounsaturated fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of monounsaturated fatty acid. tmpzr1t_l9r_go_relaxed.owl monounsaturated fatty acid degradation|monounsaturated fatty acid breakdown|monounsaturated fatty acid catabolism pr 2015-02-25T20:35:58Z biological_process owl:Class GO:0097640 biolink:NamedThing L-ornithine import across plasma membrane The directed movement of L-ornithine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl L-ornithine import into cell pr 2014-09-03T09:48:14Z GO:1903411 biological_process owl:Class GO:1900860 biolink:NamedThing positive regulation of brevianamide F biosynthetic process Any process that activates or increases the frequency, rate or extent of brevianamide F biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up regulation of brevianamide F biosynthetic process|up-regulation of brevianamide F biosynthetic process|upregulation of brevianamide F biosynthetic process di 2012-06-07T09:53:25Z biological_process owl:Class GO:0039634 biolink:NamedThing killing by virus of host cell during superinfection exclusion The viral-killing of a host cell by a pre-existing virus in response to a subsequent infection of the host cell by second virus. tmpzr1t_l9r_go_relaxed.owl Rex exclusion|killing by virus of host cells involved in superinfection exclusion|killing by virus of host cells during superinfection exclusion bf 2012-08-10T14:46:03Z biological_process owl:Class GO:0102180 biolink:NamedThing 4alpha-hydroxymethyl-stigmasta-7,24(241)-dien-3beta-ol-methyl oxidase activity Catalysis of the reaction: 4alpha-hydroxymethyl-stigmasta-7,24(241)-dien-3beta-ol + NADH + O2 + H+ <=> 4alpha-formyl-stigmasta-7,24(241)-dien-3beta-ol + NAD + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:59036|MetaCyc:RXN-11936 molecular_function owl:Class GO:0033806 biolink:NamedThing fluorothreonine transaldolase activity Catalysis of the reaction: L-threonine + fluoroacetaldehyde = acetaldehyde + 4-fluoro-L-threonine. tmpzr1t_l9r_go_relaxed.owl fluoroacetaldehyde:L-threonine aldehydetransferase activity RHEA:11748|EC:2.2.1.8 molecular_function owl:Class GO:0009253 biolink:NamedThing peptidoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls. tmpzr1t_l9r_go_relaxed.owl peptidoglycan degradation|peptidoglycan breakdown|murein catabolic process|murein catabolism|peptidoglycan catabolism GO:0009286 biological_process owl:Class GO:0042985 biolink:NamedThing negative regulation of amyloid precursor protein biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta. tmpzr1t_l9r_go_relaxed.owl negative regulation of amyloid precursor protein biosynthesis|negative regulation of amyloid precursor protein anabolism|down-regulation of amyloid precursor protein biosynthetic process|inhibition of amyloid precursor protein biosynthetic process|downregulation of amyloid precursor protein biosynthetic process|negative regulation of amyloid precursor protein synthesis|negative regulation of APP biosynthesis|negative regulation of APP biosynthetic process|down regulation of amyloid precursor protein biosynthetic process|negative regulation of amyloid precursor protein formation biological_process owl:Class GO:0002729 biolink:NamedThing positive regulation of natural killer cell cytokine production Any process that activates or increases the frequency, rate, or extent of natural killer cell cytokine production. tmpzr1t_l9r_go_relaxed.owl up regulation of natural killer cell cytokine production|positive regulation of NK cell cytokine production|upregulation of natural killer cell cytokine production|stimulation of natural killer cell cytokine production|activation of natural killer cell cytokine production|up-regulation of natural killer cell cytokine production biological_process owl:Class GO:0034299 biolink:NamedThing reproductive blastospore formation The formation of a spore following the marked enlargement of part of a cell before separation by a septum. Blastospores are a type of asexual spore found in some fungi, most notably the class Glomeromycota. tmpzr1t_l9r_go_relaxed.owl blastoconidium formation Note that this term should not be confused with the usage of 'blastospore' to mean any yeast-form fungal cell, as in Candida species. biological_process owl:Class GO:0043838 biolink:NamedThing phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase activity Catalysis of the reaction: Kdo2-lipid A + phosphatidylethanolamine = phosphoethanolamine-Kdo2-lipid A + diacylglycerol. tmpzr1t_l9r_go_relaxed.owl phosphoethanolamine transferase|EptB Note that Kdo is an abbreviation for 3-deoxy-D-manno-oct-2-ulosonic acid. molecular_function owl:Class GO:0047346 biolink:NamedThing aldose-1-phosphate adenylyltransferase activity Catalysis of the reaction: aldose 1-phosphate + ADP = phosphate + ADP-aldose. tmpzr1t_l9r_go_relaxed.owl ADP:alpha-D-aldose-1-phosphate adenylyltransferase activity|ADP-aldose phosphorylase activity|ADPaldose phosphorylase activity|adenosine diphosphosugar phosphorylase activity|ADP sugar phosphorylase activity|sugar-1-phosphate adenylyltransferase activity|adenosine diphosphate glucose:orthophosphate adenylyltransferase activity|ADP-sugar phosphorylase activity|ADP:aldose-1-phosphate adenylyltransferase activity MetaCyc:2.7.7.36-RXN|EC:2.7.7.36 molecular_function owl:Class GO:0098758 biolink:NamedThing response to interleukin-8 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-8 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-8 biological_process owl:Class GO:0050278 biolink:NamedThing sedoheptulose-bisphosphatase activity Catalysis of the reaction: sedoheptulose 1,7-bisphosphate + H2O = sedoheptulose 7-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl sedoheptulose-1,7-bisphosphatase activity|sedoheptulose diphosphatase activity|sedoheptulose-1,7-bisphosphate 1-phosphohydrolase activity|sedoheptulose 1,7-diphosphatase activity|sedoheptulose bisphosphatase activity|sedoheptulose 1,7-diphosphate phosphatase activity|sedoheptulose 1,7-bisphosphatase activity|SBPase activity MetaCyc:SEDOHEPTULOSE-BISPHOSPHATASE-RXN|RHEA:17461|EC:3.1.3.37 molecular_function owl:Class GO:1904430 biolink:NamedThing negative regulation of t-circle formation Any process that stops, prevents or reduces the frequency, rate or extent of t-circle formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of telomeric circle formation|down regulation of t-circle formation|downregulation of telomeric circle formation|inhibition of telomeric circle formation|inhibition of t-circle formation|down-regulation of t-circle formation|down regulation of telomeric circle formation|down-regulation of telomeric circle formation|downregulation of t-circle formation nc 2015-07-03T15:15:52Z biological_process owl:Class GO:0008312 biolink:NamedThing 7S RNA binding Binding to a 7S RNA, the RNA component of the signal recognition particle (SRP). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046358 biolink:NamedThing butyrate biosynthetic process The chemical reactions and pathways resulting in the formation of butyrate, the anion of butyric acid. tmpzr1t_l9r_go_relaxed.owl butanoic acid biosynthetic process|butanoic acid formation|butanoic acid synthesis|butyrate biosynthesis|butyrate anabolism|butyrate synthesis|butanoic acid biosynthesis|butanoic acid anabolism|butyrate formation GO:0043439 biological_process owl:Class GO:0070477 biolink:NamedThing endospore core An intracellular part that represents the innermost portion of an endospore; the endospore core is dehydrated, enriched in dipicolinic acid and divalent cations, and metabolically inactive. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071342 biolink:NamedThing regulation of establishment of actomyosin contractile ring localization Any process that modulates the frequency, rate or extent of the process in which a contractile ring is assembled in a specific location that contributes to cytokinesis during cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of establishment of contractile ring localization involved in cytokinesis during cell cycle|regulation of establishment of contractile ring localisation involved in cell cycle cytokinesis|regulation of establishment of contractile ring localization involved in cell cycle cytokinesis mah 2009-12-11T01:22:11Z biological_process owl:Class GO:0022841 biolink:NamedThing potassium ion leak channel activity Enables the transport of a potassium ion across a membrane via a narrow pore channel that is open even in an unstimulated or 'resting' state. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0022840 biolink:NamedThing leak channel activity Enables the transport of a solute across a membrane via a narrow pore channel that is open even in an unstimulated or 'resting' state. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050606 biolink:NamedThing 4-carboxy-2-hydroxymuconate semialdehyde hemiacetal dehydrogenase activity Catalysis of the reaction: 4-carboxy-2-hydroxymuconate semialdehyde hemiacetal + NADP(+) = 2-oxo-2H-pyran-4,6-dicarboxylate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl alpha-hydroxy-gamma-carboxymuconic epsilon-semialdehyde dehydrogenase activity|4-carboxy-2-hydroxy-cis,cis-muconate-6-semialdehyde:NADP(+) oxidoreductase activity|4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase activity|2-hydroxy-4-carboxymuconate 6-semialdehyde dehydrogenase activity EC:1.1.1.312|RHEA:29587|KEGG_REACTION:R04279|MetaCyc:1.2.1.45-RXN molecular_function owl:Class GO:0018396 biolink:NamedThing peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine The hydroxylation of peptidyl-lysine to peptidyl-4-hydroxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0235 biological_process owl:Class GO:0070138 biolink:NamedThing ubiquitin-like protein-specific isopeptidase activity Catalysis of the hydrolysis of an isopeptide bond between a small protein such as ubiquitin or a ubiquitin-like protein (e.g. APG8, ISG15, NEDD8, SUMO) and a protein to which the small protein has been conjugated. tmpzr1t_l9r_go_relaxed.owl small conjugating protein-specific isopeptidase activity molecular_function owl:Class GO:0051967 biolink:NamedThing negative regulation of synaptic transmission, glutamatergic Any process that stops, prevents, or reduces the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate. tmpzr1t_l9r_go_relaxed.owl down-regulation of synaptic transmission, glutamatergic|down regulation of synaptic transmission, glutamatergic|inhibition of synaptic transmission, glutamatergic|downregulation of synaptic transmission, glutamatergic biological_process owl:Class GO:0044580 biolink:NamedThing butyryl-CoA catabolic process The chemical reactions a resulting in the resulting in the breakdown of butyryl-CoA. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA catabolism jl 2012-04-19T04:28:46Z biological_process owl:Class GO:0032095 biolink:NamedThing regulation of response to food Any process that modulates the frequency, rate or extent of a response to a food stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990428 biolink:NamedThing miRNA transport The directed movement of microRNA (miRNA) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl microRNA transport jl 2014-07-29T14:03:46Z biological_process owl:Class GO:1904542 biolink:NamedThing regulation of free ubiquitin chain polymerization Any process that modulates the frequency, rate or extent of free ubiquitin chain polymerization. tmpzr1t_l9r_go_relaxed.owl An example of this is PARK2 in human (UniProt symbol O60260) in PMID:24660806 (inferred from mutant phenotype). pad 2015-08-11T11:44:53Z biological_process owl:Class GO:0071021 biolink:NamedThing U2-type post-spliceosomal complex A spliceosomal complex that is formed following the second splicing event and contains the spliced product, the excised intron, and three snRNPs, U5, U2 and U6. tmpzr1t_l9r_go_relaxed.owl major post-spliceosomal complex|mammalian U2-type spliceosomal complex C2|yeast U2-type spliceosomal complex A2-3|GT-AG post-spliceosomal complex mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:0071020 biolink:NamedThing post-spliceosomal complex A spliceosomal complex that is formed following the second splicing event and contains the spliced product, the excised intron, and three snRNPs, including U5. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal complex C2|yeast spliceosomal complex A2-3 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1903137 biolink:NamedThing regulation of cell wall integrity MAPK cascade Any process that modulates the frequency, rate or extent of MAPK cascade involved in cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of MAPK cascade involved in cell wall organization or biogenesis|regulation of cell integrity MAPK pathway|regulation of PMK1-MAPK signal transduction pathway|regulation of Pmk1 MAPK cell integrity signaling|regulation of Slt2 cascade|regulation of MAPKKK cascade involved in cell wall biogenesis|regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|regulation of Mpk1 cascade|regulation of MAPK cascade involved in cell wall biogenesis|regulation of cell wall biogenesis, MAPKKK cascade https://github.com/geneontology/go-ontology/issues/20131 mah 2014-07-01T10:21:53Z biological_process owl:Class GO:0090083 biolink:NamedThing regulation of inclusion body assembly Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body. tmpzr1t_l9r_go_relaxed.owl tb 2009-10-23T11:07:22Z biological_process owl:Class GO:0043980 biolink:NamedThing histone H2B-K12 acetylation The modification of histone H2B by the addition of an acetyl group to a lysine residue at position 12 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2B acetylation at K12 biological_process owl:Class GO:0102133 biolink:NamedThing limonene hydroxylase activity Catalysis of the reaction: (4R)-limonene + O2 + NADH + H+ <=> (4R)-perillyl alcohol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11493 molecular_function owl:Class GO:0018780 biolink:NamedThing dichloroacetate halidohydrolase activity Catalysis of the reaction: dichloroacetate + H2O = 2 HCl + glyoxylate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0383 molecular_function owl:Class GO:0071467 biolink:NamedThing cellular response to pH Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T11:41:54Z biological_process owl:Class GO:0060234 biolink:NamedThing neuroblast delamination The negative regulation of cell adhesion process in which a neuroblast splits off of a neurectodermal sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046624 biolink:NamedThing sphingolipid transporter activity Enables the directed movement of sphingolipids into, out of or within a cell, or between cells. Sphingolipids are a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9695890 molecular_function owl:Class GO:0047415 biolink:NamedThing D-benzoylarginine-4-nitroanilide amidase activity Catalysis of the reaction: N(2)-benzoyl-D-arginine-4-nitroanilide + H(2)O = 4-nitroaniline + N(2)-benzoyl-D-arginine + H(+). tmpzr1t_l9r_go_relaxed.owl N-benzoyl-D-arginine-4-nitroanilide amidohydrolase activity|D-BAPA-ase activity|benzoyl-D-arginine arylamidase activity KEGG_REACTION:R04113|EC:3.5.1.72|RHEA:14421|MetaCyc:3.5.1.72-RXN molecular_function owl:Class GO:0052804 biolink:NamedThing nitroimidazole catabolic process The chemical reactions and pathways resulting in the breakdown of nitroimidazoles, imidazole derivatives with a nitro group attached to one ring. tmpzr1t_l9r_go_relaxed.owl nitroimidazole degradation|nitroimidazole catabolism|nitroimidazole breakdown biological_process owl:Class GO:0019447 biolink:NamedThing D-cysteine catabolic process The chemical reactions and pathways resulting in the breakdown of D-cysteine, (S)-2-amino-3-mercaptopropanoic acid, which occurs naturally in firefly luciferin. tmpzr1t_l9r_go_relaxed.owl D-cysteine catabolism|D-cysteine breakdown|D-cysteine degradation biological_process owl:Class GO:0033235 biolink:NamedThing positive regulation of protein sumoylation Any process that activates or increases the frequency, rate or extent of the addition of SUMO groups to a protein. tmpzr1t_l9r_go_relaxed.owl positive regulation of sumoylation biological_process owl:Class GO:0004865 biolink:NamedThing protein serine/threonine phosphatase inhibitor activity Binds to and stops, prevents or reduces the activity of a serine/threonine protein phosphatase, an enzyme that catalyzes the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904239 biolink:NamedThing regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly Any process that modulates the frequency, rate or extent of VCP-NPL4-UFD1 AAA ATPase complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of VCP-NPL4-UFD1 AAA ATPase complex formation|regulation of p97-Ufd1-Npl4 complex assembly|regulation of p97-Ufd1-Npl4 complex formation|regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly|regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation bf 2015-05-18T09:50:21Z biological_process owl:Class GO:0010590 biolink:NamedThing regulation of septum digestion after cytokinesis Any process that modulates the rate, frequency or extent of the process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic cytokinetic cell separation|regulation of cell separation following cytokinesis|regulation of cell separation after cytokinesis GO:1902467|GO:2001041 biological_process owl:Class GO:0102083 biolink:NamedThing 7,8-dihydromonapterin aldolase activity Catalysis of the reaction: 7,8-dihydromonapterin <=> glycolaldehyde + 2-amino-6-(hydroxymethyl)-7,8-dihydropteridin-4-ol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10857 molecular_function owl:Class GO:0032468 biolink:NamedThing Golgi calcium ion homeostasis Any process involved in the maintenance of an internal steady state of calcium ions within the Golgi apparatus of a cell or between the Golgi and its surroundings. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion concentration in Golgi|Golgi calcium ion concentration regulation|regulation of Golgi calcium ion concentration|calcium ion homeostasis in Golgi biological_process owl:Class GO:0015860 biolink:NamedThing purine nucleoside transmembrane transport The process in which a purine nucleoside is transported across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside membrane transport|purine nucleoside transport Note that this term is not intended for use in annotating lateral movement within membranes. GO:0035427 biological_process owl:Class GO:0110089 biolink:NamedThing regulation of hippocampal neuron apoptotic process Any process that modulates the occurrence or rate of cell death by apoptotic process in hippocampal neurons. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-13T21:18:29Z biological_process owl:Class GO:1902725 biolink:NamedThing negative regulation of satellite cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of satellite cell differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of satellite cell differentiation|down-regulation of satellite cell differentiation|down regulation of satellite cell differentiation|downregulation of satellite cell differentiation mr 2014-02-24T16:10:05Z biological_process owl:Class GO:0061232 biolink:NamedThing mesonephric glomerular epithelium development The process whose specific outcome is the progression of the mesonephric glomerular epithelium over time, from its formation to the mature structure. The mesonephric glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus in the mesonephros. The mesonephric glomerular epithelium consists of both parietal and visceral epithelium. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:49:46Z biological_process owl:Class GO:0060846 biolink:NamedThing blood vessel endothelial cell fate commitment The commitment of a cell to a blood vessel endothelial cell fate and its capacity to differentiate into a blood vessel endothelial cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:56:14Z biological_process owl:Class GO:1990883 biolink:NamedThing rRNA cytidine N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + cytidine = CoA + N4-acetylcytidine. The cytidine is within the polynucleotide chain of an rRNA. tmpzr1t_l9r_go_relaxed.owl al 2015-10-28T13:27:35Z molecular_function owl:Class GO:2001147 biolink:NamedThing camalexin binding Binding to camalexin. tmpzr1t_l9r_go_relaxed.owl 3-(1,3-thiazol-2-yl)-1H-indole binding tb 2011-10-19T10:54:19Z molecular_function owl:Class GO:0005848 biolink:NamedThing mRNA cleavage stimulating factor complex A protein complex required for mRNA cleavage but not for poly(A) addition. tmpzr1t_l9r_go_relaxed.owl CstF complex|cleavage stimulation factor activity cellular_component owl:Class GO:0031822 biolink:NamedThing type 1B serotonin receptor binding Binding to a type 1B serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 1B receptor binding|type 1B serotonin receptor ligand molecular_function owl:Class GO:0018675 biolink:NamedThing (S)-limonene 6-monooxygenase activity Catalysis of the reaction: (-)-limonene + NADPH + H+ + O2 = (-)-trans-carveol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl (-)-limonene 6-monooxygenase activity|(-)-limonene,NADPH:oxygen oxidoreductase (6-hydroxylating) activity|(S)-limonene,NADPH:oxygen oxidoreductase (6-hydroxylating)|limonene 6-hydroxylase activity|(-)-limonene 6-hydroxylase activity UM-BBD_reactionID:r0713|RHEA:17945|EC:1.14.14.51|MetaCyc:--LIMONENE-6-MONOOXYGENASE-RXN molecular_function owl:Class GO:0070056 biolink:NamedThing prospore membrane leading edge The region of the prospore membrane that extends to surround the spore nucleus; coated with specific proteins that are thought to play a role in prospore membrane organization. tmpzr1t_l9r_go_relaxed.owl forespore membrane leading edge cellular_component owl:Class GO:0098725 biolink:NamedThing symmetric cell division Cell division in which both daughter cells are of the same type. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004381 biolink:NamedThing fucosylgalactoside 3-alpha-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-alpha-D-galactosyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:alpha-L-fucosyl-(1,2)-D-galactoside 3-alpha-D-galactosyltransferase activity|UDPgalactose:alpha-L-fucosyl-(1,2)-D-galactoside 3-alpha-D-galactosyltransferase activity|UDPgalactose:alpha-L-fucosyl-(1->2)-D-galactoside 3-alpha-D-galactosyltransferase activity|UDP-galactose:alpha-L-fucosyl-(1->2)-D-galactoside 3-alpha-D-galactosyltransferase activity|histo-blood substance B-dependent galactosyltransferase activity|histo-blood substance beta-dependent galactosyltransferase activity|histo-blood group B transferase activity|glycoprotein-fucosylgalactoside alpha-galactosyltransferase activity|blood-group substance beta-dependent galactosyltransferase activity|[blood group substance] alpha-galactosyltransferase activity|B transferase activity|UDPgalactose:glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose 3-alpha-D-galactosyltransferase activity|fucosylglycoprotein 3-alpha-galactosyltransferase activity|blood-group substance B-dependent galactosyltransferase activity|UDPgalactose:O-alpha-L-fucosyl(1,2)D-galactose alpha-D-galactosyltransferase activity|UDPgalactose:O-alpha-L-fucosyl(1->2)D-galactose alpha-D-galactosyltransferase activity Reactome:R-HSA-9034053|MetaCyc:2.4.1.37-RXN|Reactome:R-HSA-9033961|RHEA:14349|EC:2.4.1.37 molecular_function owl:Class GO:0015764 biolink:NamedThing N-acetylglucosamine transport The directed movement of N-acetylglucosamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031318 biolink:NamedThing detection of folic acid The series of events in which a folic acid stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl folate detection|detection of folate|folate sensing|folic acid sensing|folic acid detection biological_process owl:Class GO:0009594 biolink:NamedThing detection of nutrient The series of events in which a nutrient stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl nutrient sensing|detection of nutrients|perception of nutrients biological_process owl:Class GO:0102179 biolink:NamedThing 24-ethylidenelophenol 4alpha-methyl oxidase activity Catalysis of the reaction: 24-ethylidenelophenol + NADH + O2 + H+ <=> 4alpha-hydroxymethyl-stigmasta-7,24(241)-dien-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11935|RHEA:59032 molecular_function owl:Class GO:0007182 biolink:NamedThing common-partner SMAD protein phosphorylation The process of introducing a phosphate group on to a common-partner SMAD protein. A common partner SMAD protein binds to pathway-restricted SMAD proteins forming a complex that translocates to the nucleus. tmpzr1t_l9r_go_relaxed.owl common partner SMAD protein phosphorylation|common-mediator SMAD protein phosphorylation|common mediator SMAD protein phosphorylation|co-SMAD protein phosphorylation biological_process owl:Class GO:0007437 biolink:NamedThing adult salivary gland morphogenesis The process in which the anatomical structures of the adult salivary gland are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032830 biolink:NamedThing negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells. tmpzr1t_l9r_go_relaxed.owl inhibition of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|down-regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation|negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development|down regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|downregulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050104 biolink:NamedThing L-gulonate 3-dehydrogenase activity Catalysis of the reaction: L-gulonate + NAD(+) = 3-dehydro-L-gulonate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-gulonic acid dehydrogenase activity|L-3-aldonic dehydrogenase activity|L-beta-hydroxy-acid-NAD-oxidoreductase activity|L-3-aldonate dehydrogenase activity|L-3-hydroxyacid dehydrogenase activity|L-gulonate:NAD+ 3-oxidoreductase activity|L-beta-hydroxyacid dehydrogenase activity KEGG_REACTION:R02640|MetaCyc:L-GULONATE-3-DEHYDROGENASE-RXN|Reactome:R-HSA-5661290|RHEA:12889|EC:1.1.1.45 molecular_function owl:Class GO:0018630 biolink:NamedThing 3,5-xylenol methylhydroxylase activity Catalysis of the reaction: 3-hydroxytoluene + NADH + O2 = NAD+ + OH- + 3-hydroxybenzyl alcohol. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|MetaCyc:3-5-XYLENOL-METHYLHYDROXYLASE-RXN|UM-BBD_reactionID:r0081 molecular_function owl:Class GO:0102746 biolink:NamedThing tetrahydrogeranylgeranyl-PP reductase activity Catalysis of the reaction: H+ + tetrahydrogeranylgeranyl-PP + NADPH = (E)-3,7,11,15-tetramethylhexadec-2-en-1-yl diphosphate + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7660 molecular_function owl:Class GO:0050194 biolink:NamedThing phosphonoacetaldehyde hydrolase activity Catalysis of the reaction: H(2)O + phosphonoacetaldehyde = acetaldehyde + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-oxoethylphosphonate phosphonohydrolase activity|2-phosphonoacetylaldehyde phosphonohydrolase activity|phosphonatase activity|phosphonoacetylaldehyde phosphonohydrolase activity KEGG_REACTION:R00747|RHEA:18905|MetaCyc:PHOSPHONOACETALDEHYDE-HYDROLASE-RXN|EC:3.11.1.1 molecular_function owl:Class GO:0033399 biolink:NamedThing cis-zeatin metabolic process The chemical reactions and pathways involving cis-zeatin, (2Z)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl cis-zeatin metabolism biological_process owl:Class GO:0000378 biolink:NamedThing RNA exon ligation The RNA metabolic process that joins two exons, each of which has free ends that were generated by endonucleolytic cleavages, by a ligation reaction. tmpzr1t_l9r_go_relaxed.owl Note that this is not a part of spliceosomal RNA splicing. biological_process owl:Class GO:0019390 biolink:NamedThing glucuronoside biosynthetic process The chemical reactions and pathways resulting in the formation of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue. tmpzr1t_l9r_go_relaxed.owl glucuronoside anabolism|glucuronoside biosynthesis|glucuronoside synthesis|glucuronide biosynthetic process|glucuronide biosynthesis|glucuronoside formation biological_process owl:Class GO:0018660 biolink:NamedThing 4-hydroxyphenylacetate,NADH:oxygen oxidoreductase (3-hydroxylating) activity Catalysis of the reaction: 4-hydroxyphenylacetate + NADH + H+ + O2 = 3,4-dihydroxyphenylacetate + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl p-hydroxyphenylacetate hydroxylase activity|4-hydroxyphenylacetate 3-hydroxylase activity|p-hydroxyphenylacetate 3-hydroxylase activity|4-hydroxyphenylacetate 3-monooxygenase activity|4 HPA 3-hydroxylase activity RHEA:16681|KEGG_REACTION:R02698|EC:1.14.14.9 molecular_function owl:Class GO:0052780 biolink:NamedThing chitobiose metabolic process The chemical reactions and pathways involving chitobioses, a family of compounds derived from chitin and based on the structure of D-glucosaminyl-(1->4)-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-03T08:48:09Z biological_process owl:Class GO:0061222 biolink:NamedThing mesonephric mesenchymal cell proliferation involved in mesonephros development The multiplication or reproduction of cells, resulting in the expansion of a mesonephric mesenchymal cell population. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T01:20:14Z biological_process owl:Class GO:0062068 biolink:NamedThing chloroplast photosystem II binding Binding to a chloroplast photosystem II. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:09:17Z molecular_function owl:Class GO:0070737 biolink:NamedThing protein-glycine ligase activity, elongating Catalysis of the posttranslational transfer of one or more glycine residues to a glycine residue covalently attached to the gamma-carboxyl group of a glutamate residue on a target protein, resulting in the elongation of a polyglycine side chain. tmpzr1t_l9r_go_relaxed.owl protein glycylase activity, elongating mah 2009-06-19T02:00:21Z molecular_function owl:Class GO:0030629 biolink:NamedThing U6 snRNA 3'-end binding Binding to a U6 small nuclear RNA (U6 snRNA) at the 3' end. tmpzr1t_l9r_go_relaxed.owl U6 snRNA 3' end binding Note that this term may be useful for annotating small nuclear RNAs (snRNAs). molecular_function owl:Class GO:0017070 biolink:NamedThing U6 snRNA binding Binding to a U6 small nuclear RNA (U6 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905204 biolink:NamedThing negative regulation of connective tissue replacement Any process that stops, prevents or reduces the frequency, rate or extent of connective tissue replacement. tmpzr1t_l9r_go_relaxed.owl downregulation of connective tissue replacement|inhibition of connective tissue replacement|down-regulation of connective tissue replacement|down regulation of connective tissue replacement bc 2016-05-17T09:54:27Z biological_process owl:Class GO:0014734 biolink:NamedThing skeletal muscle hypertrophy The enlargement or overgrowth of all or part of an organ due to an increase in size (not length) of individual muscle fibers without cell division. In the case of skeletal muscle cells this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031729 biolink:NamedThing CCR4 chemokine receptor binding Binding to a CCR4 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR4 chemokine receptor ligand molecular_function owl:Class GO:0042946 biolink:NamedThing glucoside transport The directed movement of glucosides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucosides are glycosides in which the sugar group is a glucose residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106333 biolink:NamedThing subcortical maternal complex Comprised of at least NLRP5, OOEP, TLE6, and KHDC3/KHDC3L with evidence of additional SCMC-associated proteins that interact with one or multiple members of the core complex. tmpzr1t_l9r_go_relaxed.owl SCMC hjd 2020-10-14T13:49:57Z cellular_component owl:Class GO:0032556 biolink:NamedThing pyrimidine deoxyribonucleotide binding Binding to a pyrimidine deoxyribonucleotide, any compound consisting of a pyrimidine deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047838 biolink:NamedThing D-xylose 1-dehydrogenase (NAD) activity Catalysis of the reaction: D-xylose + NAD+ = D-xylonolactone + NADH. tmpzr1t_l9r_go_relaxed.owl NAD-D-xylose dehydrogenase activity|D-xylose:NAD+ 1-oxidoreductase activity|(NAD)-linked D-xylose dehydrogenase activity|NAD-D-xylose|NAD-linked D-xylose dehydrogenase activity|D-xylose dehydrogenase activity EC:1.1.1.175|MetaCyc:D-XYLOSE-1-DEHYDROGENASE-RXN|RHEA:13861 molecular_function owl:Class GO:0070315 biolink:NamedThing G1 to G0 transition involved in cell differentiation A cell cycle arrest process that results in arrest during G1 phase, whereupon the cell enters G0 phase, in the context of cell differentiation. tmpzr1t_l9r_go_relaxed.owl G1/G0 transition involved in cell differentiation biological_process owl:Class GO:0050026 biolink:NamedThing L-glycol dehydrogenase activity Catalysis of the reaction: an L-glycol + NAD(P)+ = a 2-hydroxycarbonyl compound + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl L-glycol:NAD(P)+ oxidoreductase activity|L-(+)-glycol:NAD(P) oxidoreductase activity|L-glycol:NAD(P) dehydrogenase activity|glycol (nicotinamide adenine dinucleotide (phosphate)) dehydrogenase activity EC:1.1.1.185|MetaCyc:L-GLYCOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0010384 biolink:NamedThing cell wall proteoglycan metabolic process The chemical reactions and pathways involving cell wall peptidoglycan, a group of glycoproteins that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. tmpzr1t_l9r_go_relaxed.owl cell wall proteoglycan metabolism biological_process owl:Class GO:1903998 biolink:NamedThing regulation of eating behavior Any process that modulates the frequency, rate or extent of eating behavior. tmpzr1t_l9r_go_relaxed.owl regulation of eating behaviour sl 2015-03-05T20:40:22Z biological_process owl:Class GO:0030491 biolink:NamedThing heteroduplex formation The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002937 biolink:NamedThing tRNA 4-thiouridine biosynthesis The processes whereby a uridine residue in a tRNA is converted to 4-thiouridine. Typically 4-thiouridine is found at position 8, in many transfer RNAs. tmpzr1t_l9r_go_relaxed.owl In E. coli, two genes are involved, nuvA (aka Thi) and NuvC (aka iscS) . NuvA converts the trNA into an unidentified intermediate in an ATP dependent manner. NucC catalyzes the second step, transferring the sulfur from cysteine to an unidentified intermediate. NuvC also participates in thiamine synthesis. hjd 2012-10-19T15:26:28Z biological_process owl:Class GO:0005527 biolink:NamedThing macrolide binding Binding to a macrolide, any of a large group of structurally related antibiotics produced by Streptomyces species. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036059 biolink:NamedThing nephrocyte diaphragm assembly The aggregation, arrangement and bonding together of a set of components to form a nephrocyte diaphragm, a specialized cell-cell junction found between nephrocytes of the insect kidney. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T04:38:40Z biological_process owl:Class GO:0038113 biolink:NamedThing interleukin-9-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-9 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-9-mediated signaling pathway|interleukin-9-mediated signalling pathway bf 2012-03-22T10:20:33Z biological_process owl:Class GO:0060919 biolink:NamedThing auxin influx The process involved in the transport of auxin into the cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-28T02:49:18Z biological_process owl:Class GO:0048795 biolink:NamedThing swim bladder morphogenesis The process in which the anatomical structure of the swim bladder is generated and organized. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ. tmpzr1t_l9r_go_relaxed.owl gas bladder morphogenesis biological_process owl:Class GO:0034798 biolink:NamedThing fosfomycin 2-L-cysteine ligase activity Catalysis of the reaction: hydrogen (2R,3S)-3-methyloxiran-2-ylphosphonic acid + L-cysteine = hydrogen (1R,2R)-1-L-cysteine-2-hydroxypropylphosphonic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1074 molecular_function owl:Class GO:0033964 biolink:NamedThing glycosphingolipid deacylase activity Catalysis of the hydrolysis of gangliosides and neutral glycosphingolipids, releasing fatty acids to form the lyso-derivatives. tmpzr1t_l9r_go_relaxed.owl glycosphingolipid amidohydrolase activity|glycosphingolipid ceramide deacylase activity MetaCyc:3.5.1.69-RXN|EC:3.5.1.69 molecular_function owl:Class GO:0050361 biolink:NamedThing tryptophan 2-monooxygenase activity Catalysis of the reaction: L-tryptophan + O(2) = CO(2) + H(2)O + indole-3-acetamide. tmpzr1t_l9r_go_relaxed.owl L-tryptophan:oxygen 2-oxidoreductase (decarboxylating) RHEA:16165|MetaCyc:TRYPTOPHAN-2-MONOOXYGENASE-RXN|KEGG_REACTION:R00679|EC:1.13.12.3 molecular_function owl:Class GO:0102261 biolink:NamedThing 8-hydroxy-5-deazaflavin:NADPH oxidoreductase activity Catalysis of the reaction: NADP + a reduced coenzyme F420 <=> NADPH + H+ + an oxidized coenzyme F420. tmpzr1t_l9r_go_relaxed.owl EC:1.5.1.40|RHEA:31363|MetaCyc:RXN-12450 molecular_function owl:Class GO:1905307 biolink:NamedThing response to miconazole Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a miconazole stimulus. tmpzr1t_l9r_go_relaxed.owl al 2016-07-06T11:55:22Z biological_process owl:Class GO:0070764 biolink:NamedThing gamma-secretase-Delta1 complex A protein complex that is formed by the association of the Notch ligand Delta1 with the gamma-secretase complex. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-29T01:11:51Z cellular_component owl:Class GO:1900237 biolink:NamedThing positive regulation of induction of conjugation with cellular fusion Any process that activates or increases the frequency, rate or extent of induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl up regulation of induction of conjugation with cellular fusion|up-regulation of induction of conjugation with cellular fusion|upregulation of induction of conjugation with cellular fusion al 2012-03-26T10:14:16Z biological_process owl:Class GO:0043136 biolink:NamedThing glycerol-3-phosphatase activity Catalysis of the reaction: glycerol 3-phosphate + H2O = glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8955794|MetaCyc:GLYCEROL-1-PHOSPHATASE-RXN molecular_function owl:Class GO:0097751 biolink:NamedThing spore-bearing structure formation The process of generating a spore-bearing structure. A spore-bearing structure is an anatomical structure that produces new spores. tmpzr1t_l9r_go_relaxed.owl sporangium formation|sporophore formation pr 2017-01-11T13:55:24Z biological_process owl:Class GO:0043208 biolink:NamedThing glycosphingolipid binding Binding to glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901604 biolink:NamedThing dethiobiotin transmembrane transporter activity Enables the transfer of dethiobiotin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl al 2012-11-08T14:42:53Z molecular_function owl:Class GO:0003693 biolink:NamedThing P-element binding Binding to a P-element, a class of Drosophila transposon responsible for hybrid dysgenesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047671 biolink:NamedThing anthranilate adenylyltransferase activity Catalysis of the reaction: anthranilate + ATP = N-adenylylanthranilate + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl anthranilic acid adenylyltransferase activity|ATP:anthranilate adenylyltransferase activity|ATP:anthranilate N-adenylyltransferase activity EC:6.3.2.40|RHEA:35091|MetaCyc:ANTHRANILATE-ADENYLYLTRANSFERASE-RXN|KEGG_REACTION:R00979 molecular_function owl:Class GO:0032540 biolink:NamedThing positive regulation of host-seeking behavior Any process that activates or increases the frequency, rate or extent of any behavior associated with finding a host organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of host-seeking behavior|activation of host-seeking behavior|up regulation of host-seeking behavior|positive regulation of host-seeking behaviour|stimulation of host-seeking behavior|upregulation of host-seeking behavior biological_process owl:Class GO:2000123 biolink:NamedThing positive regulation of stomatal complex development Any process that activates or increases the frequency, rate or extent of stomatal complex development. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-27T08:28:28Z biological_process owl:Class GO:0018363 biolink:NamedThing peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester-L-methionine sulfonium The covalent linkage of heme to peroxidase via dihydroxyheme-L-aspartyl ester-L-glutamyl ester-L-methionine sulfonium. tmpzr1t_l9r_go_relaxed.owl peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester-L-methionine sulphonium|peroxidase-haem linkage via dihydroxyhaem-L-aspartyl ester-L-glutamyl ester-L-methionine sulfonium RESID:AA0280 GO:0019925 biological_process owl:Class GO:0047147 biolink:NamedThing trimethylsulfonium-tetrahydrofolate N-methyltransferase activity Catalysis of the reaction: (6S)-5,6,7,8-tetrahydrofolate + trimethylsulfonium = (6S)-5-methyl-5,6,7,8-tetrahydrofolate + dimethyl sulfide + H(+). tmpzr1t_l9r_go_relaxed.owl trimethylsulphonium-tetrahydrofolate N-methyltransferase activity|trimethylsulfonium-tetrahydrofolate methyltransferase activity|trimethylsulfonium:tetrahydrofolate N-methyltransferase activity MetaCyc:2.1.1.19-RXN|EC:2.1.1.19|RHEA:13693|KEGG_REACTION:R02573 molecular_function owl:Class GO:0008263 biolink:NamedThing pyrimidine-specific mismatch base pair DNA N-glycosylase activity Catalysis of the removal of mismatched pyrimidine bases in DNA. Enzymes with this activity recognize and remove pyrimidines present in mismatches by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl G/T-mismatch-specific thymine-DNA glycosylase activity molecular_function owl:Class GO:1903588 biolink:NamedThing negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis Any process that stops, prevents or reduces the frequency, rate or extent of blood vessel endothelial cell proliferation involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl down-regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|downregulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|negative regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|downregulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|down-regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|inhibition of blood vessel endothelial cell proliferation during sprouting angiogenesis|down regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|down regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|inhibition of blood vessel endothelial cell proliferation involved in sprouting angiogenesis pga 2014-11-04T11:39:39Z biological_process owl:Class GO:0097677 biolink:NamedThing STAT family protein binding Binding to a member of the signal transducers and activators of transcription (STAT) protein family. STATs are, as the name indicates, both signal transducers and transcription factors. STATs are activated by cytokines and some growth factors and thus control important biological processes including cell growth, cell differentiation, apoptosis and immune responses. tmpzr1t_l9r_go_relaxed.owl signal transducers and activators of transcription family protein binding pr 2014-11-04T11:31:03Z molecular_function owl:Class GO:0060851 biolink:NamedThing vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell fate. tmpzr1t_l9r_go_relaxed.owl vascular endothelial growth factor receptor signalling pathway involved in lymphatic endothelial cell fate commitment dph 2009-08-12T11:45:19Z biological_process owl:Class GO:0008802 biolink:NamedThing betaine-aldehyde dehydrogenase activity Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+. tmpzr1t_l9r_go_relaxed.owl betaine aldehyde oxidase activity|BetB|betaine aldehyde dehydrogenase activity|BADH activity|betaine-aldehyde:NAD+ oxidoreductase activity MetaCyc:BADH-RXN|Reactome:R-HSA-6797955|EC:1.2.1.8|RHEA:15305 molecular_function owl:Class GO:0019554 biolink:NamedThing glutamate catabolic process to oxaloacetate The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including oxaloacetate. tmpzr1t_l9r_go_relaxed.owl glutamate degradation to oxaloacetate|glutamate breakdown to oxaloacetate biological_process owl:Class GO:0060905 biolink:NamedThing regulation of induction of conjugation upon nitrogen starvation Any process that modulates the frequency of induction of conjugation upon nitrogen starvation, the process in which a cell initiates conjugation with cellular fusion upon nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-14T01:17:50Z biological_process owl:Class GO:0043688 biolink:NamedThing conversion of aspartyl-tRNA to asparaginyl-tRNA The modification process that results in the conversion of aspartate charged on a tRNA(Asn) to asparaginyl-tRNA. tmpzr1t_l9r_go_relaxed.owl Note that this process has been observed in some archaeal and bacterial species. biological_process owl:Class GO:0046371 biolink:NamedThing dTDP-mannose metabolic process The chemical reactions and pathways involving dTDP-mannose, a substance composed of mannose in glycosidic linkage with deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP-mannose metabolism biological_process owl:Class GO:0042619 biolink:NamedThing poly-hydroxybutyrate biosynthetic process The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells. tmpzr1t_l9r_go_relaxed.owl poly-hydroxybutyrate anabolism|poly-hydroxybutyrate biosynthesis|PHB biosynthesis|poly-hydroxybutyrate formation|PHB biosynthetic process|poly-hydroxybutyrate synthesis biological_process owl:Class GO:0099192 biolink:NamedThing cerebellar Golgi cell to granule cell synapse A synapse formed by a cerebellar Golgi cell synapsing on to a cerebellar granule cell. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T16:12:25Z cellular_component owl:Class GO:0097318 biolink:NamedThing invasive growth in response to abiotic stimulus The growth of colonies in filamentous chains of cells as a result of a abiotic stimulus. An example of this process is found in Candida albicans. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-31T10:39:31Z biological_process owl:Class GO:0106301 biolink:NamedThing arachidonic acid 5,6-epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-5,6-epoxyeicosatrienoic acid. tmpzr1t_l9r_go_relaxed.owl RHEA:49936 hjd 2020-08-28T19:08:45Z molecular_function owl:Class GO:0034568 biolink:NamedThing isoproturon dimethylaminedehydrogenase activity Catalysis of the reaction: isoproturon + H2O = formaldehyde + monodemethylisoproturon + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.5.99.-|UM-BBD_reactionID:r0892 molecular_function owl:Class GO:0047800 biolink:NamedThing cysteamine dioxygenase activity Catalysis of the reaction: cysteamine + O(2) = H(+) + hypotaurine. tmpzr1t_l9r_go_relaxed.owl cysteamine:oxygen oxidoreductase activity|cysteamine oxygenase activity|2-aminoethanethiol:oxygen oxidoreductase activity|persulfurase activity KEGG_REACTION:R02467|MetaCyc:CYSTEAMINE-DIOXYGENASE-RXN|EC:1.13.11.19|Reactome:R-HSA-6814153|RHEA:14409 molecular_function owl:Class GO:0042628 biolink:NamedThing mating plug formation The deposition of a plug of sperm or other gelatinous material into the opening of the vulva by a male at the termination of copulation. Probably acts to prevent subsequent matings by other males. tmpzr1t_l9r_go_relaxed.owl copulatory plug biosynthesis|copulatory plug deposition|mating plug deposition|copulatory plug formation biological_process owl:Class GO:0004052 biolink:NamedThing arachidonate 12(S)-lipoxygenase activity Catalysis of the reaction: arachidonate + O(2) = (5Z,8Z,10E,12S,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate. tmpzr1t_l9r_go_relaxed.owl LTA4 synthase activity|delta12-lipoxygenase activity|12Delta-lipoxygenase activity|leukotriene A4 synthase|C-12 lipoxygenase activity|12-lipoxygenase activity|arachidonate:oxygen 12-oxidoreductase activity|12S-lipoxygenase activity Reactome:R-HSA-9026007|Reactome:R-HSA-9026006|Reactome:R-HSA-2161948|Reactome:R-HSA-2161964|RHEA:10428|Reactome:R-HSA-9025957|Reactome:R-HSA-9024983|EC:1.13.11.31|MetaCyc:ARACHIDONATE-12-LIPOXYGENASE-RXN|KEGG_REACTION:R01596|Reactome:R-HSA-2161950 molecular_function owl:Class GO:0051061 biolink:NamedThing ADP reductase activity Catalysis of the reaction: dADP + thioredoxin disulfide + H2O = ADP + thioredoxin. tmpzr1t_l9r_go_relaxed.owl ADP reduction MetaCyc:ADPREDUCT-RXN|RHEA:28034 molecular_function owl:Class GO:0062161 biolink:NamedThing regulation of pyocyanine biosynthetic process Any process that modulates the frequency, rate or extent of a pyocyanine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of pyocyanin biosynthetic process dph 2019-11-06T14:36:27Z biological_process owl:Class GO:0039666 biolink:NamedThing virion attachment to host cell pilus The process by which a virion attaches to a host cell by binding to a pilus on the host cell surface. Pili are retractile filaments that protrude from gram-negative bacteria. Filamentous viruses can attach to the pilus tip, whereas icosahedral viruses can attach to the pilus side. tmpzr1t_l9r_go_relaxed.owl pilus-mediated viral adsorption onto host cell|pilus-adsorption protein|viral attachment to host cell pilus|pilus-mediated viral attachment to host cell VZ:981 bf 2013-08-29T13:31:10Z biological_process owl:Class GO:0048212 biolink:NamedThing Golgi vesicle uncoating The process in which Golgi vesicle coat proteins are depolymerized, and released for reuse. tmpzr1t_l9r_go_relaxed.owl Golgi vesicle coat protein depolymerization|Golgi vesicle coat depolymerization|Golgi-derived vesicle uncoating|dictyosome vesicle coat depolymerization biological_process owl:Class GO:0072319 biolink:NamedThing vesicle uncoating A protein depolymerization process that results in the disassembly of vesicle coat proteins. tmpzr1t_l9r_go_relaxed.owl vesicle coat disassembly mah 2010-10-26T12:09:21Z biological_process owl:Class GO:0060440 biolink:NamedThing trachea formation The process pertaining to the initial formation of a trachea from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the trachea is recognizable. The trachea is the portion of the airway that attaches to the bronchi as it branches. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060233 biolink:NamedThing oenocyte delamination The negative regulation of cell adhesion process in which an oenocyte splits off of an existing epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140661 biolink:NamedThing cytoskeletal motor inhibitor activity Binds to and stops, prevents, or reduces the activity of a motor protein. tmpzr1t_l9r_go_relaxed.owl motor activity inhibitor activity https://github.com/geneontology/go-ontology/issues/21627|https://github.com/geneontology/go-ontology/issues/21756 pg 2021-06-16T11:22:54Z molecular_function owl:Class GO:1990630 biolink:NamedThing IRE1-RACK1-PP2A complex A protein complex consisting of IRE1 (Inositol-requiring enzyme-1), RACK1 (Receptor of activated protein kinase C 1, GNB2L1) and PP2A (protein phosphatase 2A). RACK1 acts as an adaptor to bridge an interaction between IRE1 and PP2A. tmpzr1t_l9r_go_relaxed.owl IRE1alpha-RACK1-PP2A complex|ERN1-RACK1-PP2A complex bf 2015-02-05T15:37:58Z cellular_component owl:Class GO:1901030 biolink:NamedThing positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of MOMP|positive regulation of mitochondrial outer membrane permeabilization|up regulation of MOMP|upregulation of mitochondrial outer membrane permeabilization|up-regulation of MOMP|up-regulation of mitochondrial outer membrane permeabilization|activation of MOMP|upregulation of MOMP|activation of mitochondrial outer membrane permeabilization|up regulation of mitochondrial outer membrane permeabilization Caspase 8 may be annotated to this term when it is shown to stimulate MOMP by cleaving the BH3-only protein BID. pr 2012-06-20T09:19:46Z biological_process owl:Class GO:0033894 biolink:NamedThing ribonuclease P4 activity Catalysis of the endonucleolytic cleavage of RNA, removing 3'-extranucleotides from tRNA precursor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.1.26.7-RXN|EC:3.1.26.7 molecular_function owl:Class GO:0052654 biolink:NamedThing L-leucine transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamatic acid. tmpzr1t_l9r_go_relaxed.owl L-leucine aminotransferase activity EC:2.6.1.42|MetaCyc:BRANCHED-CHAINAMINOTRANSFERLEU-RXN|KEGG_REACTION:R01090 molecular_function owl:Class GO:0021844 biolink:NamedThing interneuron sorting involved in substrate-independent cerebral cortex tangential migration The establishment and response to guidance cues that distribute interneurons to different cerebral cortex structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990503 biolink:NamedThing dendritic lamellar body A specialized secretory organelle found in neurons and associated with the formation of dendrodendritic gap junctions. tmpzr1t_l9r_go_relaxed.owl DLB sl 2014-09-30T20:47:28Z cellular_component owl:Class GO:2000522 biolink:NamedThing positive regulation of immunological synapse formation Any process that activates or increases the frequency, rate or extent of immunological synapse formation. tmpzr1t_l9r_go_relaxed.owl positive regulation of formation of immunological synapse ebc 2011-03-23T10:18:23Z biological_process owl:Class GO:0150087 biolink:NamedThing multiple synapse bouton, contacting single dendrite A single axon terminal bouton making contact onto two or more dendritic spines protruding from the same dendrite. tmpzr1t_l9r_go_relaxed.owl type 1 multisynapse bouton|MSB1|type 1 multi-synaptic bouton|type 1 multisynaptic bouton|type 1 multi-synapse bouton|type 1 multiple spine synapse bouton|type 1 multiple-synapse bouton bc 2018-08-08T13:26:34Z cellular_component owl:Class GO:0150086 biolink:NamedThing multiple synapse bouton A single axon terminal bouton making contact onto two or more dendritic spines protruding either from a single dendrite or from multiple dendrites. tmpzr1t_l9r_go_relaxed.owl multisynaptic bouton|multiple-synapse bouton|multi-synaptic bouton|MSB|multisynapse bouton|multi-synapse|multisynapse|multiple synapse|multi-synapse bouton|multiple spine synapse bouton bc 2018-08-08T13:21:17Z cellular_component owl:Class GO:0097118 biolink:NamedThing neuroligin clustering involved in postsynaptic membrane assembly The receptor clustering process involved in assembly of the postsynaptic membrane in which neuroligins are localized to distinct domains in the cell membrane. Neuroligins are neuronal cell surface proteins on the postsynaptic membrane that mediate synapse formation between neurons. tmpzr1t_l9r_go_relaxed.owl neuroligin clustering|postsynaptic neuroligin clustering|Nlgn clustering pr 2011-07-31T05:47:25Z biological_process owl:Class GO:0034062 biolink:NamedThing 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 3'-end. tmpzr1t_l9r_go_relaxed.owl RNA nucleotidyltransferase activity|ribonucleic acid transcriptase activity|ribonucleate nucleotidyltransferase activity|transcriptase|ribonucleic transcriptase activity|RNA transcriptase activity|ribonucleate polymerase activity|RNA polymerase activity|ribonucleic acid nucleotidyltransferase|C RNA formation factors|C ribonucleic acid formation factors|ribonucleic polymerase activity|ribonucleic acid polymerase activity Reactome:R-HSA-6786881|Reactome:R-HSA-5696807 molecular_function owl:Class GO:0050461 biolink:NamedThing L-mimosine synthase activity Catalysis of the reaction: 3,4-dihydroxypyridine + O-acetyl-L-serine = 3-(3,4-dihydroxypyridinium-1-yl)-L-alanine + acetate. tmpzr1t_l9r_go_relaxed.owl O(3)-acetyl-L-serine acetate-lyase (adding 3,4-dihydroxypyridin-1-yl) activity|3-O-acetyl-L-serine:3,4-dihydroxypyridine 1-(2-amino-2-carboxyethyl)transferase activity|O3-acetyl-L-serine acetate-lyase (adding 3,4-dihydroxypyridin-1-yl)|O3-acetyl-L-serine:3,4-dihydroxypyridine 1-(2-amino-2-carboxyethyl)transferase activity RHEA:12693|MetaCyc:RXN-7461|KEGG_REACTION:R04091|EC:2.5.1.52 molecular_function owl:Class GO:0036520 biolink:NamedThing astrocyte-dopaminergic neuron signaling Cell-cell signaling that mediates the transfer of information from an astrocyte to a dopaminergic neuron. tmpzr1t_l9r_go_relaxed.owl astrocyte-dopaminergic neuron cell signaling|mesencephalic dopaminergic neuron-astrocyte crosstalk|midbrain dopaminergic neuron-astrocyte crosstalk|dopaminergic neuron-astrocyte crosstalk bf 2016-02-29T14:05:47Z biological_process owl:Class GO:0150098 biolink:NamedThing glial cell-neuron signaling Cell-cell signaling that mediates the transfer of information from a glial cell to a neuron. This signaling has been shown to be mediated by various molecules, depending on which glial cells release them, and in which tissues the signalling occurs, e.g. microglial cell-derived nerve growth factor (NGF) in the retina, or microglial cell-derived superoxide ions in the cerebellum. tmpzr1t_l9r_go_relaxed.owl glial cell-neurone signalling|glia-neuron signalling|glia-neuron signaling|glia-neurone signalling|glial cell-neurone singaling|glial cell- neuron signalling|glia-neurone signaling bc 2018-12-17T12:28:09Z biological_process owl:Class GO:0062082 biolink:NamedThing HLA-E specific inhibitory MHC class Ib receptor activity Combining with a MHC class Ib molecule of the HLA-A subclass to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-15T15:06:22Z molecular_function owl:Class GO:0046826 biolink:NamedThing negative regulation of protein export from nucleus Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of proteins from the nucleus into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein-nucleus export|down regulation of protein export from nucleus|downregulation of protein export from nucleus|inhibition of protein export from nucleus|negative regulation of protein export out of nucleus|negative regulation of protein transport from nucleus to cytoplasm|down-regulation of protein export from nucleus|negative regulation of protein export from cell nucleus biological_process owl:Class GO:0006430 biolink:NamedThing lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045317 biolink:NamedThing equator specification The formation and development of the equator that forms the boundary between the photoreceptors in the dorsal sector of the eye and those in the ventral sector, dividing the eye into dorsal and ventral halves. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902185 biolink:NamedThing positive regulation of shoot apical meristem development Any process that activates or increases the frequency, rate or extent of shoot apical meristem development. tmpzr1t_l9r_go_relaxed.owl activation of promeristem development|upregulation of SAM development|up regulation of shoot apical meristem development|positive regulation of SAM development|upregulation of promeristem development|up regulation of primary shoot meristem development|upregulation of shoot apical meristem development|positive regulation of promeristem development|activation of primary shoot meristem development|up-regulation of shoot apical meristem development|activation of shoot apical meristem development|activation of SAM development|up regulation of SAM development|up-regulation of SAM development|up-regulation of primary shoot meristem development|up-regulation of promeristem development|positive regulation of primary shoot meristem development|upregulation of primary shoot meristem development|up regulation of promeristem development tb 2013-05-31T16:34:05Z biological_process owl:Class GO:0090554 biolink:NamedThing phosphatidylcholine floppase activity Catalysis of the movement of phosphatidylcholine from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ATP-dependent phosphatidylcholine transporter activity|phosphatidylcholine-translocating ATPase activity|phosphatidylcholine floppase activity (cytosolic to exoplasmic leaftlet)|ATPase-coupled phosphatidylcholine transporter activity RHEA:38583 tb 2013-10-24T16:07:20Z molecular_function owl:Class GO:1901346 biolink:NamedThing negative regulation of vasculature development involved in avascular cornea development in camera-type eye Any negative regulation of vasculature development that is involved in developing an avascular cornea of a camera-type eye. tmpzr1t_l9r_go_relaxed.owl downregulation of vascular system development involved in avascular cornea development|down-regulation of vasculature development involved in avascular cornea development in camera-type eye|inhibition of vascular system development involved in avascular cornea development in camera-type eye|inhibition of vascular system development involved in avascular cornea development|downregulation of vascular system development involved in avascular cornea development in camera-type eye|downregulation of vasculature development involved in avascular cornea development in camera-type eye|negative regulation of vascular system development involved in avascular cornea development|inhibition of vasculature development involved in avascular cornea development in camera-type eye|down-regulation of vascular system development involved in avascular cornea development in camera-type eye|negative regulation of vasculature development involved in avascular cornea development|down regulation of vasculature development involved in avascular cornea development|downregulation of vasculature development involved in avascular cornea development|down regulation of vascular system development involved in avascular cornea development|down regulation of vasculature development involved in avascular cornea development in camera-type eye|down-regulation of vascular system development involved in avascular cornea development|down regulation of vascular system development involved in avascular cornea development in camera-type eye|negative regulation of vascular system development involved in avascular cornea development in camera-type eye|down-regulation of vasculature development involved in avascular cornea development|inhibition of vasculature development involved in avascular cornea development bf 2012-09-07T15:53:40Z biological_process owl:Class GO:0050988 biolink:NamedThing N-terminal peptidyl-methionine carboxylation The carboxylation of the N-terminal methionine of proteins to form the derivative N-carboxy-L-methionine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0363 biological_process owl:Class GO:0006975 biolink:NamedThing DNA damage induced protein phosphorylation The widespread phosphorylation of various molecules, triggering many downstream processes, that occurs in response to the detection of DNA damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002202 biolink:NamedThing somatic diversification of variable lymphocyte receptors of jawless fish The somatic process that results in the generation of sequence diversity of the variable lymphocyte receptors (VLR) of jawless fish. tmpzr1t_l9r_go_relaxed.owl Note that jawless fish refers to both lampreys (Petremyzontidae, ncbi_taxonomy_id:7746) and hagfish (Myxinidae, ncbi_taxonomy_id:7762). biological_process owl:Class GO:0033402 biolink:NamedThing UUC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UUC codon. tmpzr1t_l9r_go_relaxed.owl TTC codon-amino acid adaptor activity|phenylalanine tRNA Note that in the standard genetic code, TTC codes for phenylalanine. molecular_function owl:Class GO:0036159 biolink:NamedThing inner dynein arm assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal dynein inner arm, an inner arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. tmpzr1t_l9r_go_relaxed.owl IDA assembly bf 2012-03-21T02:25:01Z biological_process owl:Class GO:0018860 biolink:NamedThing anthranilate-CoA ligase activity Catalysis of the reaction: ATP + anthranilate + CoA = AMP + diphosphate + anthranilyl-CoA. tmpzr1t_l9r_go_relaxed.owl anthranilate--CoA ligase activity|anthraniloyl coenzyme A synthetase activity|2-aminobenzoate-CoA ligase activity|2-aminobenzoate coenzyme A ligase activity|anthranilate:CoA ligase (AMP-forming)|2-aminobenzoate-coenzyme A ligase activity MetaCyc:AMINOBENZCOALIG-RXN|UM-BBD_reactionID:r0341|EC:6.2.1.32|KEGG_REACTION:R00982|RHEA:10828 molecular_function owl:Class GO:0098676 biolink:NamedThing modulation of host virulence by virus Any process by which a virus modulates the ability of its host to infect and/or damage an organism for which it is a host. Typically this involves a phage modulating the virulence of a bacterium. Mechanisms include the expression of factors that modulate a bacterial adhesion to a host cell, spread through host tissues, production exotoxins or provide protection against host immune defenses. tmpzr1t_l9r_go_relaxed.owl VZ:3965 dos 2017-01-19T11:59:46Z biological_process owl:Class GO:0004528 biolink:NamedThing phosphodiesterase I activity Catalysis of the sequential hydrolytic removal of 5'-nucleotides from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides. tmpzr1t_l9r_go_relaxed.owl 5'NPDE activity|exonuclease I activity|5'-NPDase activity|orthophosphoric diester phosphohydrolase activity|5'-phosphodiesterase activity|phosphodiesterase activity|nucleotide pyrophosphatase/phosphodiesterase I activity|5'-exonuclease activity|PDE I activity|oligonucleate 5'-nucleotidohydrolase activity|5'-PDE activity|5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|5'-nucleotide phosphodiesterase activity|alkaline phosphodiesterase activity|5'-PDase activity EC:3.1.4.1|MetaCyc:3.1.4.1-RXN molecular_function owl:Class GO:0018140 biolink:NamedThing peptide cross-linking via L-cysteine thiazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl cysteine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0244 biological_process owl:Class GO:0002314 biolink:NamedThing germinal center B cell differentiation The process in which a B cell in the spleen acquires the specialized features of a germinal center B cell. Germinal center B cells are rapidly cycling B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA). tmpzr1t_l9r_go_relaxed.owl germinal center B cell development|germinal center B-cell differentiation|germinal center B lymphocyte differentiation|germinal center B-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0060152 biolink:NamedThing microtubule-based peroxisome localization The microtubule-based process in which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. tmpzr1t_l9r_go_relaxed.owl microtubule-based peroxisome localisation biological_process owl:Class GO:0102280 biolink:NamedThing choline monooxygenase activity (NADP-dependent) Catalysis of the reaction: choline + NADP = betaine aldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12582 molecular_function owl:Class GO:0000953 biolink:NamedThing branched-chain amino acid catabolic process to carboxylic acid via Ehrlich pathway The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanoate, 2-methylbutanoate, or 2-methylpropanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids. tmpzr1t_l9r_go_relaxed.owl branched chain family amino acid catabolic process to carboxylic acid via Ehrlich pathway biological_process owl:Class GO:1900662 biolink:NamedThing negative regulation of emericellamide A biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of emericellamide A biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of emericellamide A synthesis|negative regulation of emericellamide A biosynthesis|down-regulation of emericellamide A biosynthetic process|downregulation of emericellamide A biosynthesis|downregulation of emericellamide A formation|negative regulation of emericellamide A anabolism|inhibition of emericellamide A anabolism|down regulation of emericellamide A formation|inhibition of emericellamide A biosynthesis|down-regulation of emericellamide A biosynthesis|down regulation of emericellamide A anabolism|down-regulation of emericellamide A synthesis|inhibition of emericellamide A formation|negative regulation of emericellamide A formation|down-regulation of emericellamide A anabolism|inhibition of emericellamide A biosynthetic process|negative regulation of emericellamide A synthesis|downregulation of emericellamide A biosynthetic process|downregulation of emericellamide A anabolism|down regulation of emericellamide A synthesis|down regulation of emericellamide A biosynthesis|down regulation of emericellamide A biosynthetic process|downregulation of emericellamide A synthesis|down-regulation of emericellamide A formation di 2012-05-22T04:13:28Z biological_process owl:Class GO:0047455 biolink:NamedThing 16-alpha-hydroxyprogesterone dehydratase activity Catalysis of the reaction: 16-alpha-hydroxyprogesterone = H2O + 16-dehydroprogesterone. tmpzr1t_l9r_go_relaxed.owl 16-dehydroprogesterone hydratase activity|16-alpha-hydroxyprogesterone dehydroxylase activity|16alpha-hydroxyprogesterone hydro-lyase (16,17-didehydroprogesterone-forming)|16alpha-hydroxyprogesterone hydro-lyase activity|16alpha-hydroxyprogesterone dehydratase activity|16alpha-hydroxyprogesterone dehydroxylase activity|16-alpha-dehydroxylase activity|hydroxyprogesterone dehydroxylase activity|16alpha-dehydroxylase activity RHEA:12584|MetaCyc:4.2.1.98-RXN|EC:4.2.1.98 GO:0047523 molecular_function owl:Class GO:0106343 biolink:NamedThing glutarate dioxygenase activity Catalysis of the reaction glutarate + 2-oxoglutarate + O2 = (S)-2-hydroxyglutarate + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl RHEA:13821|EC:1.14.11.64 hjd 2020-11-17T18:04:10Z molecular_function owl:Class GO:0047289 biolink:NamedThing galactosyldiacylglycerol alpha-2,3-sialyltransferase activity Catalysis of the reaction: 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + CMP-N-acetyl-beta-neuraminate = 1,2-diacyl-3-[3-(alpha-D-N-acetylneuraminyl)-beta-D-galactosyl]-sn-glycerol + CMP + H(+). tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate:1,2-diacyl-3-beta-D-galactosyl-sn-glycerol N-acetylneuraminyltransferase activity EC:2.4.99.5|MetaCyc:2.4.99.5-RXN|KEGG_REACTION:R03468|RHEA:11664 molecular_function owl:Class GO:0097268 biolink:NamedThing cytoophidium A subcellular filamentary structure where CTP synthase is compartmentalized in a range of organisms including bacteria, yeast, fruit fly, rat and human. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-15T01:00:20Z cellular_component owl:Class GO:2000504 biolink:NamedThing positive regulation of blood vessel remodeling Any process that activates or increases the frequency, rate or extent of blood vessel remodeling. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-21T10:33:20Z biological_process owl:Class GO:0006850 biolink:NamedThing mitochondrial pyruvate transmembrane transport The process in which pyruvate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl pyruvate transmembrane transport in mitochondria|pyruvate membrane transport in mitochondrion|pyruvate membrane transport in mitochondria|mitochondrial pyruvate transport|pyruvate transmembrane transport in mitochondrion dph 2013-08-15T11:19:35Z GO:1902361 biological_process owl:Class GO:0098697 biolink:NamedThing ryanodine-sensitive calcium-release channel activity involved in regulation of postsynaptic cytosolic calcium levels Any ryanodine-sensitive calcium-release channel activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl dos 2017-04-04T17:11:38Z molecular_function owl:Class GO:0005020 biolink:NamedThing stem cell factor receptor activity Combining with stem cell factor (SCF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. Stem cell factor is a cytokine that stimulates mast cell growth and differentiation. tmpzr1t_l9r_go_relaxed.owl KIT|KIT ligand receptor activity|SCF receptor activity|KL receptor activity molecular_function owl:Class GO:1901586 biolink:NamedThing negative regulation of acid-sensing ion channel activity Any process that stops, prevents or reduces the frequency, rate or extent of acid-sensing ion channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of acid-sensing ion channel activity|downregulation of acid-sensing ion channel activity|down regulation of ASIC activity|negative regulation of ASIC activity|down-regulation of ASIC activity|down regulation of acid-sensing ion channel activity|inhibition of ASIC activity|inhibition of acid-sensing ion channel activity|downregulation of ASIC activity jl 2012-11-07T13:37:32Z biological_process owl:Class GO:0044526 biolink:NamedThing formation of peptidyl-cystine persulfide by sulphur transfer from free cysteine The modification of a peptidyl-cystine residue in a protein by the transfer of a sulfur atom from a free cysteine (in the process converting the free cysteine to alanine) to the peptidyl-cysteine to form peptidyl-cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T09:45:19Z biological_process owl:Class GO:0072689 biolink:NamedThing MCM complex assembly The aggregation, arrangement and bonding together of a set of components to form an MCM complex, a hexameric protein complex required for the initiation and regulation of DNA replication. tmpzr1t_l9r_go_relaxed.owl mah 2011-08-12T10:57:29Z biological_process owl:Class GO:0140481 biolink:NamedThing ABC-type iron-sulfur cluster transporter activity Catalysis of the reaction: ATP + H2O + iron-sulfur cluster(in) = ADP + phosphate + iron-sulfur cluster(out). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled iron-sulfur cluster transmembrane transporter activity|ATPase-coupled Fe-S cluster transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/19685 TC:3.A.1.210.1 pg 2020-06-25T17:41:01Z molecular_function owl:Class GO:0004734 biolink:NamedThing pyrimidodiazepine synthase activity Catalysis of the reaction: a pyrimidodiazepine + oxidized glutathione = 6-pyruvoyltetrahydropterin + 2 glutathione. tmpzr1t_l9r_go_relaxed.owl pyrimidodiazepine:glutathione-disulfide oxidoreductase (ring-opening, cyclizing)|PDA synthase activity MetaCyc:1.5.4.1-RXN|RHEA:10720|EC:1.5.4.1 molecular_function owl:Class GO:0016648 biolink:NamedThing oxidoreductase activity, acting on the CH-NH group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces disulfide. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH group of donors, disulphide as acceptor EC:1.5.4.- molecular_function owl:Class GO:0097001 biolink:NamedThing ceramide binding Binding to a ceramide, a class of lipids composed of sphingosine linked to a fatty acid. Ceramides are a major component of cell membranes. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-09T11:34:09Z molecular_function owl:Class GO:0005610 biolink:NamedThing laminin-5 complex A laminin complex composed of alpha3, beta3 and gamma2 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-3A32 complex|laminin-332 complex|laminin-5A complex cellular_component owl:Class GO:0031371 biolink:NamedThing ubiquitin conjugating enzyme complex Any complex that possesses ubiquitin conjugating enzyme activity. tmpzr1t_l9r_go_relaxed.owl E2 complex cellular_component owl:Class GO:0070694 biolink:NamedThing deoxyribonucleoside 5'-monophosphate N-glycosidase activity Catalysis of the reaction: a deoxyribonucleoside 5'-monophosphate + H2O = deoxyribose 5-monophosphate + a purine or pyrimidine base. tmpzr1t_l9r_go_relaxed.owl deoxynucleoside 5'-monophosphate N-glycosidase activity Reactome:R-HSA-8953339 mah 2009-06-04T03:06:57Z molecular_function owl:Class GO:1990969 biolink:NamedThing modulation by host of viral RNA-binding transcription factor activity A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor. tmpzr1t_l9r_go_relaxed.owl modulation by host of viral Tat activity bf 2016-06-21T12:12:31Z biological_process owl:Class GO:1902610 biolink:NamedThing response to N-phenylthiourea Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a N-phenylthiourea stimulus. tmpzr1t_l9r_go_relaxed.owl rjd 2014-01-08T01:57:49Z biological_process owl:Class GO:0097721 biolink:NamedThing ciliary vesicle A Golgi-derived vesicle to which the ciliary basal body docks via its transitional fibers. Its membrane is compositionally distinct from Golgi membranes, and will become the ciliary membrane once the ciliary vesicle is fused to the plasma membrane. The ciliary vesicle is thought to be formed by multiple smaller vesicles that attach to the transitional fibers and then fuse to form a larger vesicle. tmpzr1t_l9r_go_relaxed.owl CV|primary ciliary vesicle pr 2016-08-30T13:54:38Z cellular_component owl:Class GO:0005289 biolink:NamedThing high-affinity L-arginine transmembrane transporter activity Enables the transfer of arginine from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity arginine transmembrane transporter activity|high-affinity arginine transmembrane transporter activity|high-affinity arginine transporter activity molecular_function owl:Class GO:1904055 biolink:NamedThing negative regulation of cholangiocyte proliferation Any process that stops, prevents or reduces the frequency, rate or extent of cholangiocyte proliferation. tmpzr1t_l9r_go_relaxed.owl down-regulation of hepatoblast proliferation|inhibition of cholangiocyte proliferation|downregulation of cholangiocyte proliferation|downregulation of hepatoblast proliferation|down regulation of hepatoblast proliferation|down regulation of cholangiocyte proliferation|down-regulation of cholangiocyte proliferation|negative regulation of hepatoblast proliferation|inhibition of hepatoblast proliferation sl 2015-03-18T17:56:20Z biological_process owl:Class GO:1905110 biolink:NamedThing negative regulation of pulmonary blood vessel remodeling Any process that stops, prevents or reduces the frequency, rate or extent of pulmonary blood vessel remodeling. tmpzr1t_l9r_go_relaxed.owl down regulation of pulmonary blood vessel remodeling|downregulation of pulmonary blood vessel remodeling|inhibition of pulmonary blood vessel remodeling|down-regulation of pulmonary blood vessel remodeling bc 2016-04-06T13:07:33Z biological_process owl:Class GO:0120189 biolink:NamedThing positive regulation of bile acid secretion Any process that activates or increases the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue. tmpzr1t_l9r_go_relaxed.owl krc 2018-07-16T22:36:17Z biological_process owl:Class GO:0061538 biolink:NamedThing histamine secretion, neurotransmission The controlled release of histamine by a cell, in which the histamine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:21:21Z biological_process owl:Class GO:0046931 biolink:NamedThing pore complex assembly The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases. tmpzr1t_l9r_go_relaxed.owl pore biosynthesis|pore formation|pore complex biogenesis|pore-forming toxin activity See also the cellular component term 'pore complex ; GO:0046930'. biological_process owl:Class GO:0033820 biolink:NamedThing DNA alpha-glucosyltransferase activity Catalysis of the transfer of an alpha-D-glucosyl residue from UDP-glucose to a hydroxymethylcytosine residue in DNA. tmpzr1t_l9r_go_relaxed.owl T6-HMC-alpha-glucosyl transferase activity|T4-HMC-alpha-glucosyl transferase activity|UDPglucose-DNA alpha-glucosyltransferase activity|uridine diphosphoglucose-deoxyribonucleate alpha-glucosyltransferase activity|UDP-glucose:DNA alpha-D-glucosyltransferase activity|T2-HMC-alpha-glucosyl transferase activity EC:2.4.1.26|MetaCyc:2.4.1.26-RXN molecular_function owl:Class GO:0042994 biolink:NamedThing cytoplasmic sequestering of transcription factor The selective interaction of a transcription factor with specific molecules in the cytoplasm, thereby inhibiting its translocation into the nucleus. tmpzr1t_l9r_go_relaxed.owl cytoplasmic sequestration of transcription factor|sequestration of transcription factor in cytoplasm|sequestering of transcription factor in cytoplasm|cytoplasmic retention of transcription factor|maintenance of transcription factor protein location in cytoplasm|storage of transcription factor in cytoplasm|transcription factor binding, cytoplasmic sequestering|cytoplasmic storage of transcription factor|retention of transcription factor in cytoplasm biological_process owl:Class GO:0001682 biolink:NamedThing tRNA 5'-leader removal Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P. tmpzr1t_l9r_go_relaxed.owl tRNA 5' leader removal biological_process owl:Class GO:0030132 biolink:NamedThing clathrin coat of coated pit The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905791 biolink:NamedThing negative regulation of mechanosensory behavior Any process that stops, prevents or reduces the frequency, rate or extent of mechanosensory behavior. tmpzr1t_l9r_go_relaxed.owl downregulation of mechanosensory behaviour|down-regulation of behavioral response to mechanical stimulus|inhibition of mechanosensory behavior|inhibition of behavioural response to mechanical stimulus|down regulation of mechanosensory behavior|inhibition of behavioral response to mechanical stimulus|down regulation of behavioral response to mechanical stimulus|downregulation of behavioural response to mechanical stimulus|downregulation of mechanosensory behavior|down-regulation of behavioural response to mechanical stimulus|inhibition of mechanosensory behaviour|down regulation of mechanosensory behaviour|down-regulation of mechanosensory behavior|down regulation of behavioural response to mechanical stimulus|downregulation of behavioral response to mechanical stimulus|negative regulation of behavioral response to mechanical stimulus|negative regulation of behavioural response to mechanical stimulus|down-regulation of mechanosensory behaviour|negative regulation of mechanosensory behaviour hbye 2017-01-09T15:17:15Z biological_process owl:Class GO:0072747 biolink:NamedThing cellular response to chloramphenicol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chloramphenicol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:33:30Z biological_process owl:Class GO:0090578 biolink:NamedThing RNA polymerase V transcription regulator complex A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase V. tmpzr1t_l9r_go_relaxed.owl RNA polymerase V transcription factor complex tb 2014-05-09T14:04:37Z cellular_component owl:Class GO:1901231 biolink:NamedThing positive regulation of non-canonical Wnt signaling pathway via JNK cascade Any process that activates or increases the frequency, rate or extent of non-canonical Wnt signaling pathway via JNK cascade. tmpzr1t_l9r_go_relaxed.owl positive regulation of non-canonical Wnt-activated signaling pathway via JNK cascade|up regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|up-regulation of non-canonical Wnt receptor signaling pathway via JNK cascade|up regulation of non-canonical Wnt receptor signalling pathway via JNK cascade|activation of non-canonical Wnt receptor signalling pathway via JNK cascade|positive regulation of non-canonical Wnt receptor signalling pathway via JNK cascade|upregulation of non-canonical Wnt receptor signaling pathway via JNK cascade|up-regulation of non-canonical Wnt receptor signalling pathway via JNK cascade|activation of non-canonical Wnt receptor signaling pathway via JNK cascade|upregulation of non-canonical Wnt receptor signalling pathway via JNK cascade|positive regulation of non-canonical Wnt receptor signaling pathway via JNK cascade vk 2012-08-07T14:14:48Z biological_process owl:Class GO:0046442 biolink:NamedThing aerobactin metabolic process The chemical reactions and pathways involving aerobactin (C22H36N4O13), a hydroxamate iron transport compound. It is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. tmpzr1t_l9r_go_relaxed.owl aerobactin metabolism biological_process owl:Class GO:0047274 biolink:NamedThing galactinol-sucrose galactosyltransferase activity Catalysis of the reaction: sucrose + 1-alpha-D-galactosyl-myo-inositol = raffinose + myo-inositol. tmpzr1t_l9r_go_relaxed.owl raffinose synthase activity|alpha-D-galactosyl-(1->3)-myo-inositol:sucrose 6-alpha-D-galactosyltransferase activity|galactinol:sucrose 6-galactosyl transferase activity|1-alpha-D-galactosyl-myo-inositol:sucrose 6-alpha-D-galactosyltransferase activity|galactosyltransferase, galactinol-sucrose RHEA:20161|MetaCyc:2.4.1.82-RXN|EC:2.4.1.82 molecular_function owl:Class GO:0047203 biolink:NamedThing 13-hydroxylupinine O-tigloyltransferase activity Catalysis of the reaction: 13-hydroxylupanine + 2-methylcrotonoyl-CoA = 13-(2-methylcrotonoyloxy)lupanine + CoA. tmpzr1t_l9r_go_relaxed.owl (E)-2-methylcrotonoyl-CoA:13-hydroxylupinine O-2-methylcrotonoyltransferase activity|tigloyl-CoA:13-hydroxylupanine O-tigloyltransferase activity|13-hydroxylupanine acyltransferase activity MetaCyc:2.3.1.93-RXN|KEGG_REACTION:R04205|RHEA:12360|EC:2.3.1.93 molecular_function owl:Class GO:0033970 biolink:NamedThing N-malonylurea hydrolase activity Catalysis of the reaction: 3-oxo-3-ureidopropanoate + H(2)O = H(+) + malonate + urea. tmpzr1t_l9r_go_relaxed.owl 3-oxo-3-ureidopropanoate amidohydrolase (urea- and malonate-forming) activity|ureidomalonase activity EC:3.5.1.95|KEGG_REACTION:R07629|MetaCyc:3.5.1.95-RXN|RHEA:17361 molecular_function owl:Class GO:0009288 biolink:NamedThing bacterial-type flagellum A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum cellular_component owl:Class GO:0044344 biolink:NamedThing cellular response to fibroblast growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an fibroblast growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to FGF stimulus jl 2010-08-25T02:00:51Z biological_process owl:Class GO:0097686 biolink:NamedThing dinoflagellate apical horn A horn-shaped dinoflagellate apex found in thecate species. tmpzr1t_l9r_go_relaxed.owl pr 2014-12-18T09:38:15Z cellular_component owl:Class GO:0036049 biolink:NamedThing peptidyl-lysine desuccinylation The removal of a succinyl group (CO-CH2-CH2-CO) from a succinylated lysine residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T09:44:54Z biological_process owl:Class GO:0097569 biolink:NamedThing lateral shield Region of the ventral side of the cell body found in Giardia species (trophozoite stage). It is located posterior on either side of the ventral groove; the upper boundary is the ventral disc, and the lower boundary is marked by the posteriolateral flagella. tmpzr1t_l9r_go_relaxed.owl Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-11T13:37:10Z cellular_component owl:Class GO:0070348 biolink:NamedThing negative regulation of brown fat cell proliferation Any process that stops or decreases the rate or extent of brown fat cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of brown fat cell proliferation|down regulation of brown fat cell proliferation|inhibition of brown fat cell proliferation|down-regulation of brown fat cell proliferation|negative regulation of brown adipocyte proliferation|negative regulation of brown adipose cell proliferation biological_process owl:Class GO:0035660 biolink:NamedThing MyD88-dependent toll-like receptor 4 signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like 4 receptor, where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like 4 receptors bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl MyD88-dependent toll-like receptor 4 signalling pathway|MyD88-dependent TLR4 signaling pathway bf 2011-02-01T10:10:04Z biological_process owl:Class GO:0002755 biolink:NamedThing MyD88-dependent toll-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response. tmpzr1t_l9r_go_relaxed.owl MyD88-dependent toll-like receptor signalling pathway|MyD88-dependent TLR signaling pathway biological_process owl:Class GO:0035439 biolink:NamedThing halimadienyl-diphosphate synthase activity Catalysis of the reaction: geranylgeranyl diphosphate = halima-5(6),13-dien-15-yl diphosphate. tmpzr1t_l9r_go_relaxed.owl halimadienyl diphosphate synthase activity|halima-5(6),13-dien-15-yl-diphosphate lyase (cyclizing) EC:5.5.1.16|RHEA:25621 bf 2010-04-09T02:59:35Z molecular_function owl:Class GO:0046430 biolink:NamedThing non-phosphorylated glucose metabolic process The chemical reactions and pathways involving non-phosphorylated forms of glucose. tmpzr1t_l9r_go_relaxed.owl non-phosphorylated glucose metabolism biological_process owl:Class GO:0102245 biolink:NamedThing lupan-3beta,20-diol synthase activity Catalysis of the reaction: lupan-3beta,20-diol <=> (S)-2,3-epoxysqualene + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:31351|MetaCyc:RXN-12338|EC:4.2.1.128 molecular_function owl:Class GO:0048712 biolink:NamedThing negative regulation of astrocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of astrocyte differentiation|inhibition of astrocyte differentiation|down regulation of astrocyte differentiation|down-regulation of astrocyte differentiation biological_process owl:Class GO:0047951 biolink:NamedThing glutathione thiolesterase activity Catalysis of the reaction: S-acylglutathione + H(2)O = a carboxylate + glutathione + H(+). tmpzr1t_l9r_go_relaxed.owl citryl-glutathione thioesterhydrolase activity|glutathione thioesterase activity|S-acylglutathione hydrolase activity RHEA:22708|KEGG_REACTION:R00547|MetaCyc:GLUTATHIONE-THIOESTERASE-RXN|EC:3.1.2.7 molecular_function owl:Class GO:1904537 biolink:NamedThing negative regulation of mitotic telomere tethering at nuclear periphery Any process that stops, prevents or reduces the frequency, rate or extent of mitotic telomere tethering at nuclear periphery. tmpzr1t_l9r_go_relaxed.owl down regulation of mitotic telomere tethering at nuclear periphery|downregulation of mitotic telomere tethering at nuclear periphery|down-regulation of mitotic telomere tethering at nuclear periphery|inhibition of mitotic telomere tethering at nuclear periphery al 2015-08-04T14:24:32Z biological_process owl:Class GO:0003293 biolink:NamedThing heart valve cell differentiation The process in which an endocardial cushion cell give rise to a cell that is part of a heart valve. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T11:06:46Z biological_process owl:Class GO:0001562 biolink:NamedThing response to protozoan Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a protozoan. tmpzr1t_l9r_go_relaxed.owl response to protozoa|resistance to pathogenic protozoa|response to protozoon GO:0042833 biological_process owl:Class GO:0102150 biolink:NamedThing 3-oxo-myristoyl-CoA hydrolase activity Catalysis of the reaction: 3-oxotetradecanoyl-CoA + H2O <=> 3-oxo-myristate + coenzyme A + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11668 molecular_function owl:Class GO:1901721 biolink:NamedThing positive regulation of NMS complex assembly Any process that activates or increases the frequency, rate or extent of NMS complex assembly. The NMS complex is involved in chromosome segregation. tmpzr1t_l9r_go_relaxed.owl up regulation of NMS complex interaction involved in chromosome segregation|activation of NMS complex association involved in chromosome segregation|up regulation of KMN network assembly involved in chromosome segregation|up-regulation of NMS complex interaction involved in chromosome segregation|upregulation of KMN complex interaction involved in chromosome segregation|upregulation of NMS complex interaction involved in chromosome segregation|upregulation of NMS complex association involved in chromosome segregation|positive regulation of KMN complex interaction involved in chromosome segregation|up-regulation of NMS complex association involved in chromosome segregation|up regulation of NMS complex association involved in chromosome segregation|activation of NMS complex interaction involved in chromosome segregation|positive regulation of KMN network assembly involved in chromosome segregation|up regulation of KMN complex interaction involved in chromosome segregation|positive regulation of NMS complex association involved in chromosome segregation|upregulation of KMN network assembly involved in chromosome segregation|positive regulation of NMS complex assembly involved in kinetochore assembly|up-regulation of KMN network assembly involved in chromosome segregation|activation of KMN network assembly involved in chromosome segregation|activation of KMN complex assembly involved in chromosome segregation|up-regulation of KMN complex interaction involved in chromosome segregation jl 2012-12-20T11:44:26Z biological_process owl:Class GO:0021743 biolink:NamedThing hypoglossal nucleus development The process whose specific outcome is the progression of the hypoglossal nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032131 biolink:NamedThing alkylated DNA binding Binding to an alkylated residue in DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102741 biolink:NamedThing paraxanthine:S-adenosyl-L-methionine 3-N-methyltransferase activity Catalysis of the reaction: 1,7-dimethylxanthine + S-adenosyl-L-methionine <=> H+ + caffeine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.160|MetaCyc:RXN-7601|RHEA:10280 molecular_function owl:Class GO:0019595 biolink:NamedThing non-phosphorylated glucose catabolic process The chemical reactions and pathways resulting in the breakdown of non-phosphorylated forms of glucose. tmpzr1t_l9r_go_relaxed.owl non-phosphorylated glucose catabolism|non-phosphorylated glucose degradation|non-phosphorylated glucose breakdown MetaCyc:NPGLUCAT-PWY biological_process owl:Class GO:0043824 biolink:NamedThing succinylglutamate-semialdehyde dehydrogenase activity Catalysis of the reaction: N-succinyl-L-glutamate 5-semialdehyde + H(2)O + NAD(+) = N-succinyl-L-glutamate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl AruD|SGSD|succinylglutamic semialdehyde dehydrogenase activity|N-succinyl-L-glutamate 5-semialdehyde:NAD+ oxidoreductase activity|N-succinylglutamate 5-semialdehyde dehydrogenase activity|succinyl glutamate-semialdehyde dehydrogenase activity|AstD KEGG_REACTION:R05049|RHEA:10812|EC:1.2.1.71|MetaCyc:SUCCGLUALDDEHYD-RXN molecular_function owl:Class GO:1990917 biolink:NamedThing ooplasm The cytoplasm of an ovum. tmpzr1t_l9r_go_relaxed.owl sl 2015-12-10T21:40:16Z cellular_component owl:Class GO:0001057 biolink:NamedThing RNA polymerase IV activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase activity involved in transcription from RNA polymerase IV promoter krc 2010-09-23T03:44:55Z molecular_function owl:Class GO:0090675 biolink:NamedThing intermicrovillar adhesion The biological adhesion process by which adjacent microvilli attach to each other through Ca(2+)-dependent adhesion links made of protocadherin-24 and mucin-like protocadherin. tmpzr1t_l9r_go_relaxed.owl tb 2016-02-19T13:34:07Z biological_process owl:Class GO:0060725 biolink:NamedThing regulation of coreceptor activity Any process that modulates the rate or frequency of coreceptor activity, combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T01:20:11Z biological_process owl:Class GO:0086079 biolink:NamedThing gap junction channel activity involved in Purkinje myocyte-ventricular cardiac muscle cell electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from a Purkinje myocyte to a ventricular cardiac muscle cell. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T10:36:23Z molecular_function owl:Class GO:0099098 biolink:NamedThing microtubule polymerization based movement The movement of a cellular component as a result of microtubule polymerization. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903984 biolink:NamedThing positive regulation of TRAIL-activated apoptotic signaling pathway Any process that activates or increases the frequency, rate or extent of TRAIL-activated apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|up-regulation of TRAIL-activated extrinsic apoptotic signaling pathway|up regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|up-regulation of TRAIL-activated apoptotic signaling pathway|up regulation of TRAIL-activated extrinsic apoptotic signaling pathway|upregulation of TRAIL-induced apoptotic signaling pathway|up regulation of TRAIL-activated apoptotic signaling pathway|upregulation of TRAIL-activated apoptotic signaling pathway|activation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|activation of TRAIL-activated apoptotic signaling pathway|up regulation of TRAIL-induced apoptotic signaling pathway|positive regulation of TRAIL-activated extrinsic apoptotic signaling pathway|up-regulation of TRAIL-induced apoptotic signaling pathway|positive regulation of TRAIL-induced apoptotic signaling pathway|activation of TRAIL-activated extrinsic apoptotic signaling pathway|upregulation of TRAIL-activated extrinsic apoptotic signaling pathway|up-regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|upregulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway|activation of TRAIL-induced apoptotic signaling pathway bf 2015-03-03T15:04:21Z biological_process owl:Class GO:0071031 biolink:NamedThing nuclear mRNA surveillance of mRNA 3'-end processing The set of processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA quality control of mRNAs with aberrant 3'-ends|nuclear mRNA catabolic process of mRNA with aberrant 3'-ends krc 2009-07-28T04:29:17Z biological_process owl:Class GO:0071765 biolink:NamedThing nuclear inner membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner membrane. tmpzr1t_l9r_go_relaxed.owl nuclear inner membrane organisation|nuclear inner membrane organization and biogenesis mah 2010-03-29T04:04:57Z biological_process owl:Class GO:0036401 biolink:NamedThing pyrokinin receptor activity Combining with a pyrokinin and transmitting the signal within the cell to induce a change in cell activity. Pyrokinins are a group of insect neuropeptides that share the common C-terminal pentapeptide sequence Phe-X-Pro-Arg-Leu-NH2 (X = S, T, K, A, or G). They play a central role in diverse physiological processes including stimulation of gut motility, production and release of sex pheromones, diapause, and pupariation. tmpzr1t_l9r_go_relaxed.owl PK receptor activity bf 2013-07-18T15:10:55Z molecular_function owl:Class GO:0015124 biolink:NamedThing allantoate transmembrane transporter activity Enables the transfer of allantoate from one side of a membrane to the other. Allantoate is the end product of purine metabolism in mammals and some fish, formed form allantoin. It is widely distributed in plants as an important source of stored nitrogen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033843 biolink:NamedThing xyloglucan 6-xylosyltransferase activity Catalysis of the transfer of an alpha-D-xylosyl residue from UDP-D-xylose to a glucose residue in xyloglucan, forming an alpha-1,6-D-xylosyl-D-glucose linkage. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoxylose-xyloglucan 6alpha-xylosyltransferase activity|UDP-D-xylose:xyloglucan 1,6-alpha-D-xylosyltransferase activity|xyloglucan 6-alpha-D-xylosyltransferase activity EC:2.4.2.39|MetaCyc:2.4.2.39-RXN molecular_function owl:Class GO:0043802 biolink:NamedThing hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) activity Catalysis of the reaction: 2 L-glutamine + 2 ATP + 2 H(2)O + hydrogenobyrinate = 2 L-glutamate + 2 ADP + 4 H(+) + hydrogenobyrinate a,c-diamide + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl hydrogenobyrinic acid a,c diamide synthase (glutamine-hydrolysing) activity|hydrogenobyrinic-acid:L-glutamine amido-ligase (AMP-forming)|CobB MetaCyc:R341-RXN|EC:6.3.5.9|KEGG_REACTION:R05224|RHEA:12544 molecular_function owl:Class GO:0099602 biolink:NamedThing neurotransmitter receptor regulator activity A molecular function that directly (via physical interaction or direct modification) activates, inhibits or otherwise modulates the activity of a neurotransmitter receptor. Modulation of activity includes changes in desensitization rate, ligand affinity, ion selectivity and pore-opening/closing. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034945 biolink:NamedThing 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA C-acetyltransferase activity Catalysis of the reaction: 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA + CoASH = 3-isopropylbut-3-enoyl-CoA + propanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.-|UM-BBD_reactionID:r0987 molecular_function owl:Class GO:0034499 biolink:NamedThing late endosome to Golgi transport The directed movement of substances from late endosomes to the Golgi. tmpzr1t_l9r_go_relaxed.owl PVE to Golgi transport|prevacuolar endosome to Golgi transport biological_process owl:Class GO:0030257 biolink:NamedThing type III protein secretion system complex A complex of approximately 20 proteins, most of which are located in the cytoplasmic membrane that carries out protein secretion in the bacterial type III secretion system; type III secretion also requires a cytoplasmic, probably membrane-associated ATPase. tmpzr1t_l9r_go_relaxed.owl TTSS complex|T3SS complex cellular_component owl:Class GO:0070358 biolink:NamedThing actin polymerization-dependent cell motility A process involved in the controlled movement of a bacterial cell powered by the continuous polymerization of actin at one pole of the cell. tmpzr1t_l9r_go_relaxed.owl cell motility by actin tail formation biological_process owl:Class GO:0043515 biolink:NamedThing kinetochore binding Binding to a kinetochore, a proteinaceous structure on a condensed chromosome, beside the centromere, to which the spindle fibers are attached. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097290 biolink:NamedThing alpha-ribazole biosynthetic process The chemical reactions and pathways resulting in the formation of alpha-ribazole, the benzimidazole nucleoside in adenosyl cobalamin (vitamin B12). tmpzr1t_l9r_go_relaxed.owl alpha-ribazole anabolism|alpha-ribazole formation|alpha-ribazole biosynthesis|alpha-ribazole synthesis pr 2012-04-25T11:51:07Z biological_process owl:Class GO:1990852 biolink:NamedThing protein transport along microtubule to spindle pole body The directed movement of a protein along a microtubule to the spindle pole body, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-15T11:09:54Z biological_process owl:Class GO:0071989 biolink:NamedThing establishment of protein localization to spindle pole body The directed movement of a protein to a specific location at the spindle pole body. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to spindle pole body mah 2010-10-25T11:01:17Z biological_process owl:Class GO:0102450 biolink:NamedThing kaempferide 7-O-methyltransferase activity Catalysis of the reaction: kaempferide + S-adenosyl-L-methionine <=> 7,4'-dimethylkaempferol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13936 molecular_function owl:Class GO:0071235 biolink:NamedThing cellular response to proline Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a proline stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:09:45Z biological_process owl:Class GO:2001124 biolink:NamedThing regulation of translational frameshifting Any process that modulates the frequency, rate or extent of translational frameshifting. tmpzr1t_l9r_go_relaxed.owl dph 2011-10-12T05:52:22Z biological_process owl:Class GO:0042428 biolink:NamedThing serotonin metabolic process The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. tmpzr1t_l9r_go_relaxed.owl serotonin metabolism biological_process owl:Class GO:0140530 biolink:NamedThing MCM complex loading The protein localization process in which two MCM complexes become associated with chromatin at replication origins. MCM loading begins when origin-bound ORC and Cdc6 (Cdc18 in fission yeast) recruit one MCM2-7/Cdt1 complex to the origin, includes formation of a succession of intermediate complexes and ATP hydrolysis-dependent Mcm2-7 ring closure, and ends when two MCM hexamers fully encircle DNA, and are oriented head-to-head. The double hexamer is inactive for DNA unwinding. MCM loading takes place during G1 phase, and precedes CMG complex assembly. tmpzr1t_l9r_go_relaxed.owl MCM complex loading at replication origin|MCM double hexamer formation at replication origin https://github.com/geneontology/go-ontology/issues/16570 pg 2020-10-12T16:46:23Z biological_process owl:Class GO:0050645 biolink:NamedThing limonoid glucosyltransferase activity Catalysis of the reaction: UDP-glucose + limonin = glucosyl-limonin + UDP. tmpzr1t_l9r_go_relaxed.owl limonoid UDP-glucosyltransferase activity|uridine diphosphoglucose-limonoid glucosyltransferase activity|LGTase activity EC:2.4.1.210|RHEA:11256|MetaCyc:2.4.1.210-RXN molecular_function owl:Class GO:0017197 biolink:NamedThing N-terminal peptidyl-proline acetylation The acetylation of the N-terminal proline of proteins to form the derivative N-acetyl-L-proline. tmpzr1t_l9r_go_relaxed.owl RESID:AA0050 biological_process owl:Class GO:0033691 biolink:NamedThing sialic acid binding Binding to a sialic acid, a N- or O- substituted derivative of neuraminic acid, a nine carbon monosaccharide. Sialic acids often occur in polysaccharides, glycoproteins, and glycolipids in animals and bacteria. tmpzr1t_l9r_go_relaxed.owl N-acetylneuraminic acid binding molecular_function owl:Class GO:0009918 biolink:NamedThing sterol delta7 reductase activity Catalysis of the reaction: 5-dehydroepisterol = 24-methylenecholesterol. tmpzr1t_l9r_go_relaxed.owl sterol delta-7 reductase activity MetaCyc:RXN-707 molecular_function owl:Class GO:0031945 biolink:NamedThing positive regulation of glucocorticoid metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids. tmpzr1t_l9r_go_relaxed.owl activation of glucocorticoid metabolic process|positive regulation of glucocorticoid metabolism|stimulation of glucocorticoid metabolic process|up-regulation of glucocorticoid metabolic process|up regulation of glucocorticoid metabolic process|upregulation of glucocorticoid metabolic process biological_process owl:Class GO:0045658 biolink:NamedThing regulation of neutrophil differentiation Any process that modulates the frequency, rate or extent of neutrophil differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030957 biolink:NamedThing Tat protein binding Binding to Tat, a viral transactivating regulatory protein from the human immunodeficiency virus, or the equivalent protein from another virus. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061386 biolink:NamedThing closure of optic fissure The closure of the temporary ventral gap in the optic cup that contributes to its shaping. tmpzr1t_l9r_go_relaxed.owl closure or choriod fissure dph 2011-03-30T08:14:59Z biological_process owl:Class GO:0060936 biolink:NamedThing cardiac fibroblast cell development The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:23:03Z biological_process owl:Class GO:0050696 biolink:NamedThing trichloroethylene catabolic process The chemical reactions and pathways resulting in the breakdown of trichloroethylene, a toxic, colorless, photoreactive, chlorinated hydrocarbon liquid, commonly used as a metal degreaser and solvent. tmpzr1t_l9r_go_relaxed.owl trichloroethylene catabolism|trichloroethene catabolism|trichloroethene catabolic process|trichloroethylene breakdown|trichloroethylene degradation biological_process owl:Class GO:0061753 biolink:NamedThing substrate localization to autophagosome The localization process by which an autophagic substrate is delivered to a forming autophagosome. tmpzr1t_l9r_go_relaxed.owl substrate sequestration to autophagosome|substrate sequestration to phagophore dph 2015-11-20T11:14:22Z biological_process owl:Class GO:0047587 biolink:NamedThing 5-alpha-hydroxysteroid dehydratase activity Catalysis of the reaction: 5alpha-ergosta-7,22-diene-3beta,5-diol = ergosterol + H(2)O. tmpzr1t_l9r_go_relaxed.owl 5alpha-ergosta-7,22-diene-3beta,5-diol 5,6-hydro-lyase activity|5alpha-hydroxysteroid dehydratase activity|5alpha-ergosta-7,22-diene-3beta,5-diol 5,6-hydro-lyase (ergosterol-forming) RHEA:22064|MetaCyc:5-ALPHA-HYDROXYSTEROID-DEHYDRATASE-RXN|EC:4.2.1.62|KEGG_REACTION:R03675 molecular_function owl:Class GO:0071449 biolink:NamedThing cellular response to lipid hydroperoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid hydroperoxide stimulus. Lipid hydroperoxide is the highly reactive primary oxygenated products of polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl cellular response to LHPO mah 2009-12-16T04:17:57Z biological_process owl:Class GO:0015834 biolink:NamedThing peptidoglycan-associated peptide transport The directed movement of peptidoglycan peptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Peptidoglycan peptides are the oligopeptides found in peptidoglycan networks which cross-link the polysaccharide chains. tmpzr1t_l9r_go_relaxed.owl peptidoglycan peptide transport|muropeptide transport|murein peptide transport biological_process owl:Class GO:1904422 biolink:NamedThing cellular response to D-galactosamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a D-galactosamine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-02T15:38:36Z biological_process owl:Class GO:0070679 biolink:NamedThing inositol 1,4,5 trisphosphate binding Binding to inositol 1,4,5 trisphosphate. tmpzr1t_l9r_go_relaxed.owl IP3 binding|InsP3 binding mah 2009-05-29T04:07:00Z molecular_function owl:Class GO:0043975 biolink:NamedThing histone H3-K36 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 36 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K36 acetylation|histone H3 acetylation at K36 biological_process owl:Class GO:0035857 biolink:NamedThing eosinophil fate specification The process involved in the specification of identity of an eosinophil cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl eosinophil cell fate specification bf 2011-05-17T10:42:54Z biological_process owl:Class GO:0051005 biolink:NamedThing negative regulation of lipoprotein lipase activity Any process that stops or reduces the activity of the enzyme lipoprotein lipase. tmpzr1t_l9r_go_relaxed.owl down-regulation of lipoprotein lipase activity|inhibition of lipoprotein lipase activity|down regulation of lipoprotein lipase activity|downregulation of lipoprotein lipase activity biological_process owl:Class GO:0033416 biolink:NamedThing UGG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UGG codon. tmpzr1t_l9r_go_relaxed.owl TGG codon-amino acid adaptor activity|tryptophan tRNA Note that in the standard genetic code, TGG codes for tryptophan. molecular_function owl:Class GO:1905757 biolink:NamedThing negative regulation of primary cell septum biogenesis Any process that stops, prevents or reduces the frequency, rate or extent of primary cell septum biogenesis. tmpzr1t_l9r_go_relaxed.owl vw 2016-12-12T18:09:59Z biological_process owl:Class GO:0009010 biolink:NamedThing sorbitol-6-phosphate 2-dehydrogenase activity Catalysis of the reaction: D-sorbitol 6-phosphate + NAD+ = D-fructose 6-phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl D-sorbitol-6-phosphate:NAD+ 2-oxidoreductase activity|D-glucitol-6-phosphate dehydrogenase activity|sorbitol-6-P-dehydrogenase activity|D-sorbitol-6-phosphate dehydrogenase activity|glucitol-6-phosphate dehydrogenase activity|ketosephosphate reductase activity|D-sorbitol 6-phosphate dehydrogenase activity MetaCyc:SORB6PDEHYDROG-RXN|EC:1.1.1.140|RHEA:19837 molecular_function owl:Class GO:0097414 biolink:NamedThing classical Lewy body Cytoplasmic inclusion, 5 to 15 micrometers in diameter, with a dense core surrounded by a halo of 10 to 20 nm wide radially oriented alpha-synuclein fibrils. tmpzr1t_l9r_go_relaxed.owl brainstem Lewy body NIF_Subcellular:sao4749542545 pr 2012-11-06T16:27:41Z cellular_component owl:Class GO:1900037 biolink:NamedThing regulation of cellular response to hypoxia Any process that modulates the frequency, rate or extent of cellular response to hypoxia. tmpzr1t_l9r_go_relaxed.owl regulation of cellular response to lowered oxygen tension|regulation of cellular response to hypoxic stress yaf 2012-01-17T09:29:03Z biological_process owl:Class GO:0039654 biolink:NamedThing fusion of virus membrane with host endosome membrane Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell. tmpzr1t_l9r_go_relaxed.owl fusion of virus membrane with host endosomal membrane|viral entry into host cell via caveolin-mediated endocytosis followed by membrane fusion with the endosome membrane|viral entry into host cell via endocytosis followed by membrane fusion with host endosome|viral penetration via endocytosis followed by caveolae-mediated membrane fusion with the endosome membrane|viral entry into host cell via endocytosis followed by membrane fusion with the endosome membrane|viral entry into host cell via caveolae-mediated endocytosis followed by membrane fusion with the endosome membrane|viral penetration via endocytosis followed by clathrin-mediated membrane fusion with the endosome membrane|viral entry into host cell via clathrin-mediated endocytosis followed by membrane fusion with the endosome membrane VZ:992 bf 2013-06-20T14:24:05Z GO:0075501|GO:0075517 biological_process owl:Class GO:0043564 biolink:NamedThing Ku70:Ku80 complex Heterodimeric protein complex composed of a 70 kDa and a 80 kDa subunit, binds DNA through a channel formed by the heterodimer. Functions in DNA double stranded break repair, chromosome maintenance, transcription regulation, V(D)J recombination, and activation of DNA-PK. tmpzr1t_l9r_go_relaxed.owl Ku70:Ku80 heterodimer cellular_component owl:Class GO:0048895 biolink:NamedThing lateral line nerve glial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a glial cell in a lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030412 biolink:NamedThing formimidoyltetrahydrofolate cyclodeaminase activity Catalysis of the reaction: 5-formimidoyltetrahydrofolate + 2 H(+) = 5,10-methenyltetrahydrofolate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing; 5,10-methenyltetrahydrofolate-forming)|5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing)|formiminotetrahydrofolate cyclodeaminase activity MetaCyc:4.3.1.4-RXN|KEGG_REACTION:R02302|RHEA:22736|Reactome:R-HSA-70920|EC:4.3.1.4 Note that cyclodeaminases are lyases according to EC, whereas deaminases are hydrolases. molecular_function owl:Class GO:0047549 biolink:NamedThing 2-nitrophenol 2-monooxygenase activity Catalysis of the reaction: 2-nitrophenol + 2 H(+) + 2 NADPH + O(2) = catechol + H(2)O + 2 NADP(+) + nitrite. tmpzr1t_l9r_go_relaxed.owl 2-nitrophenol oxygenase activity|nitrophenol oxygenase activity|2-nitrophenol,NADPH:oxygen 2-oxidoreductase (2-hydroxylating, nitrite-forming) EC:1.14.13.31|RHEA:19457|MetaCyc:2-NITROPHENOL-2-MONOOXYGENASE-RXN|UM-BBD_reactionID:r1494|KEGG_REACTION:R00828 molecular_function owl:Class GO:1990255 biolink:NamedThing subsynaptic reticulum organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a subsynaptic reticulum. A subsynaptic reticulum is an elaborate tubulolamellar membrane system that underlies the postsynaptic cell membrane. tmpzr1t_l9r_go_relaxed.owl tb 2013-12-13T23:05:21Z biological_process owl:Class GO:0090682 biolink:NamedThing GPCR bitter taste receptor activity A G protein-coupled receptor activity that is responsible for the sense of bitter taste. tmpzr1t_l9r_go_relaxed.owl G protein-coupled receptor bitter taste receptor activity|G-protein coupled receptor bitter taste receptor activity tb 2016-05-20T15:49:18Z molecular_function owl:Class GO:0102482 biolink:NamedThing 5-deoxy-D-glucuronate isomerase activity Catalysis of the reaction: 5-deoxy-D-glucuronate = 5-dehydro-2-deoxy-D-gluconate. tmpzr1t_l9r_go_relaxed.owl RHEA:25840|MetaCyc:RXN-14150|EC:5.3.1.30 molecular_function owl:Class GO:0110077 biolink:NamedThing vesicle-mediated intercellular transport A cellular transport process in which transported substances are moved in extracellular vesicles between cells; transported substances are enclosed in the vesicle lumen or located in the extracellular vesicle membrane. tmpzr1t_l9r_go_relaxed.owl kmv 2018-01-29T14:46:52Z biological_process owl:Class GO:0047012 biolink:NamedThing sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity Catalysis of the reaction: NAD(P)+ + 3-beta-hydroxy-4-alpha-methyl-5-alpha-cholest-7-ene-4-beta-carboxylate = NAD(P)H + H+ + CO2 + 4-alpha-methyl-5-alpha-cholest-7-en-3-one. tmpzr1t_l9r_go_relaxed.owl 3-beta-hydroxy-4-alpha-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating) activity|3-beta-hydroxy-4-beta-methylcholestenoate dehydrogenase activity|sterol 4-alpha-carboxylic decarboxylase activity|3beta-hydroxy-4alpha-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating)|3-beta-hydroxy-4-beta-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating) activity MetaCyc:1.1.1.170-RXN|EC:1.1.1.170 molecular_function owl:Class GO:0044561 biolink:NamedThing modulation of ion channel activity in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of an ion channel in another organism. tmpzr1t_l9r_go_relaxed.owl regulation of ion channel activity in other organism jl 2012-04-05T03:48:28Z biological_process owl:Class GO:0035916 biolink:NamedThing modulation of calcium channel activity in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of a calcium channel in another organism. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-01T11:51:38Z biological_process owl:Class GO:0004591 biolink:NamedThing oxoglutarate dehydrogenase (succinyl-transferring) activity Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. tmpzr1t_l9r_go_relaxed.owl alpha-ketoglutarate dehydrogenase activity|AKGDH activity|oxoglutarate dehydrogenase activity|oxoglutarate dehydrogenase (lipoamide) activity|alpha-ketoglutaric dehydrogenase activity|2-oxoglutarate:lipoamide 2-oxidoreductase (decarboxylating and acceptor-succinylating) activity|oxoglutarate decarboxylase activity|2-oxoglutarate:dihydrolipoyllysine-residue succinyltransferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)|ketoglutaric dehydrogenase activity|2-oxoglutarate dehydrogenase activity|2-ketoglutarate dehydrogenase activity|alpha-ketoglutaric acid dehydrogenase activity|2-oxoglutarate: lipoate oxidoreductase activity|alpha-oxoglutarate dehydrogenase activity|OGDC activity MetaCyc:2OXOGLUTDECARB-RXN|RHEA:12188|EC:1.2.4.2 molecular_function owl:Class GO:0016624 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulphide as acceptor EC:1.2.4.- molecular_function owl:Class GO:0047238 biolink:NamedThing glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: D-glucuronyl-N-acetyl-1,3-beta-D-galactosaminylproteoglycan + UDP-N-acetylgalactosamine = N-acetyl-D-galactosaminyl-1,4-beta-D-glucuronyl-N-acetyl-1,3-beta-D-galactosaminylproteoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-galactosamine:beta-D-glucuronosyl-(1->3)-N-acetyl-beta-D-galactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|chondroitin synthase activity|UDP-N-acetyl-D-galactosamine:D-glucuronyl-N-acetyl-1,3-beta-D-galactosaminylproteoglycan beta-1,4-N-acetylgalactosaminyltransferase activity|uridine diphosphoacetylgalactosamine-chondroitin acetylgalactosaminyltransferase II activity|glucuronyl-N-acetylgalactosaminylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronyl-N-acetylgalactosaminylproteoglycan beta-1,4-N-acetylgalactosaminyltransferase activity|N-acetylgalactosaminyltransferase II activity Reactome:R-HSA-3595176|EC:2.4.1.175|Reactome:R-HSA-1971487|Reactome:R-HSA-1971482|Reactome:R-HSA-9632033|MetaCyc:2.4.1.175-RXN molecular_function owl:Class GO:0018388 biolink:NamedThing N-terminal peptidyl-valine condensation with pyruvate to form N-pyruvic acid 2-iminyl-L-valine The condensation of pyruvate through the 2-oxo group with the N-terminal valine of proteins to form the derivative N-pyruvic acid 2-iminyl-L-valine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0275 biological_process owl:Class GO:0019036 biolink:NamedThing viral transcriptional complex Specific locations and structures in the virus infected cell involved in transcribing the viral genome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102574 biolink:NamedThing 3-oxo-myristoyl-ACP hydrolase activity Catalysis of the reaction: H2O + a 3-oxo-myristoyl-[acp] = 3-oxo-myristate + H+ + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15280 molecular_function owl:Class GO:0047032 biolink:NamedThing 3-alpha-hydroxyglycyrrhetinate dehydrogenase activity Catalysis of the reaction: 3alpha-hydroxyglycyrrhetinate + NADP(+) = 3-oxoglycyrrhetinate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3alpha-hydroxyglycyrrhetinate dehydrogenase activity|3alpha-hydroxyglycyrrhetinate:NADP+ 3-oxidoreductase activity KEGG_REACTION:R04099|RHEA:20816|MetaCyc:1.1.1.230-RXN|EC:1.1.1.230 molecular_function owl:Class GO:0031713 biolink:NamedThing B2 bradykinin receptor binding Binding to a B2 bradykinin receptor. tmpzr1t_l9r_go_relaxed.owl B2 bradykinin receptor ligand molecular_function owl:Class GO:1901154 biolink:NamedThing paromomycin catabolic process The chemical reactions and pathways resulting in the breakdown of paromomycin. tmpzr1t_l9r_go_relaxed.owl paromomycin degradation|paromomycin breakdown|paromomycin catabolism yaf 2012-07-17T04:27:44Z biological_process owl:Class GO:0007499 biolink:NamedThing ectoderm and mesoderm interaction A cell-cell signaling process occurring between the two gastrulation-generated layers of the ectoderm and the mesoderm. tmpzr1t_l9r_go_relaxed.owl ectoderm/mesoderm interaction biological_process owl:Class GO:1905386 biolink:NamedThing positive regulation of protein localization to presynapse Any process that activates or increases the frequency, rate or extent of protein localization to presynapse. tmpzr1t_l9r_go_relaxed.owl activation of protein localisation in presynapse|up regulation of protein localisation in presynapse|positive regulation of protein localisation in presynapse|up-regulation of protein localization to presynapse|activation of protein localization in presynapse|positive regulation of protein localisation to presynapse|up-regulation of protein localisation to presynapse|up-regulation of protein localization in presynapse|up regulation of protein localization in presynapse|activation of recruitment of presynaptic proteins|upregulation of protein localization to presynapse|up regulation of recruitment of presynaptic proteins|upregulation of protein localisation in presynapse|up-regulation of recruitment of presynaptic proteins|upregulation of recruitment of presynaptic proteins|activation of protein localization to presynapse|up regulation of protein localisation to presynapse|activation of protein localisation to presynapse|upregulation of protein localization in presynapse|up-regulation of protein localisation in presynapse|positive regulation of recruitment of presynaptic proteins|up regulation of protein localization to presynapse|upregulation of protein localisation to presynapse|positive regulation of protein localization in presynapse dos 2016-08-18T14:56:21Z biological_process owl:Class GO:0043105 biolink:NamedThing negative regulation of GTP cyclohydrolase I activity Any process that stops or reduces the activity of the enzyme GTP cyclohydrolase I. tmpzr1t_l9r_go_relaxed.owl inhibition of GTP cyclohydrolase I activity|down regulation of GTP cyclohydrolase I activity|downregulation of GTP cyclohydrolase I activity|down-regulation of GTP cyclohydrolase I activity biological_process owl:Class GO:0018896 biolink:NamedThing dibenzothiophene catabolic process The chemical reactions and pathways resulting in the breakdown of dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond. tmpzr1t_l9r_go_relaxed.owl dibenzothiophene degradation|dibenzothiophene breakdown|dibenzothiophene catabolism UM-BBD_pathwayID:dbt2 biological_process owl:Class GO:0033378 biolink:NamedThing establishment of protease localization to T cell secretory granule The directed movement of a protease to a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl establishment of protease localization in T cell secretory granule|establishment of protease localization in T lymphocyte secretory granule|establishment of protease localization in T-cell secretory granule|establishment of protease localisation in T cell secretory granule|establishment of protease localization in T-lymphocyte secretory granule biological_process owl:Class GO:0033376 biolink:NamedThing establishment of protein localization to T cell secretory granule The directed movement of a protein to a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl establishment of protein localization in T-lymphocyte secretory granule|establishment of protein localization in T cell secretory granule|establishment of protein localization in T lymphocyte secretory granule|establishment of protein localisation in T cell secretory granule|establishment of protein localization in T-cell secretory granule biological_process owl:Class GO:0006185 biolink:NamedThing dGDP biosynthetic process The chemical reactions and pathways resulting in the formation of dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dGDP anabolism|dGDP synthesis|dGDP formation|dGDP biosynthesis biological_process owl:Class GO:0097322 biolink:NamedThing 7SK snRNA binding Binding to a 7SK small nuclear RNA (7SK snRNA). tmpzr1t_l9r_go_relaxed.owl 7SK small nuclear RNA binding pr 2012-06-05T11:42:23Z molecular_function owl:Class GO:0048644 biolink:NamedThing muscle organ morphogenesis The process in which the anatomical structures of muscle are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050224 biolink:NamedThing prunasin beta-glucosidase activity Catalysis of the reaction: (R)-prunasin + H(2)O = D-glucose + mandelonitrile. tmpzr1t_l9r_go_relaxed.owl prunasin hydrolase activity|prunasin b-glucosidase activity|prunasin beta-D-glucohydrolase activity MetaCyc:PRUNASIN-BETA-GLUCOSIDASE-RXN|EC:3.2.1.118|KEGG_REACTION:R02558|RHEA:16489 molecular_function owl:Class GO:0060861 biolink:NamedThing positive regulation of floral organ abscission Any process that increases the rate, frequency, or extent of floral organ shedding, the controlled shedding of floral organs. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T04:03:09Z biological_process owl:Class GO:0031441 biolink:NamedThing negative regulation of mRNA 3'-end processing Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA 3'-end processing. tmpzr1t_l9r_go_relaxed.owl down regulation of mRNA 3'-end processing|inhibition of mRNA 3'-end processing|downregulation of mRNA 3'-end processing|down-regulation of mRNA 3'-end processing biological_process owl:Class GO:0102293 biolink:NamedThing pheophytinase b activity Catalysis of the reaction: pheophytin b + H2O <=> H+ + pheophorbide b + phytol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12686|EC:3.1.1.14 molecular_function owl:Class GO:0018036 biolink:NamedThing C-terminal peptidyl-asparagine amidation The formation of a C-terminal peptidyl-asparagine amide by hydrolysis and oxidation of an interior Asn-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0083 biological_process owl:Class GO:0010254 biolink:NamedThing nectary development The process whose specific outcome is the progression of the floral nectaries over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052849 biolink:NamedThing NADPH-dependent curcumin reductase activity Catalysis of the reaction: curcumin + NADPH + H+ = dihydrocurcumin + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6676|EC:1.3.1.n3 ai 2011-12-05T11:03:23Z molecular_function owl:Class GO:0015721 biolink:NamedThing bile acid and bile salt transport The directed movement of bile acid and bile salts into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl bile salt transport|bile acid transport biological_process owl:Class GO:2001089 biolink:NamedThing maltotriose transport The directed movement of a maltotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T01:24:26Z biological_process owl:Class GO:0018653 biolink:NamedThing 3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity Catalysis of the reaction: 3-methyl-2-oxo-1,2-dihydroquinoline + O2 + 2 H+ + 2 e- = H2O + 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0046 molecular_function owl:Class GO:0003310 biolink:NamedThing pancreatic A cell differentiation The process in which relatively unspecialized cells acquire specialized structural and functional features of a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon. tmpzr1t_l9r_go_relaxed.owl pancreatic alpha cell differentiation dph 2009-10-26T09:28:05Z biological_process owl:Class GO:0048273 biolink:NamedThing mitogen-activated protein kinase p38 binding Binding to mitogen-activated protein kinase p38, an enzyme that catalyzes the transfer of phosphate from ATP to hydroxyl side chains on proteins in response to mitogen activation. tmpzr1t_l9r_go_relaxed.owl MAPK p38 binding molecular_function owl:Class GO:0097297 biolink:NamedThing activation of cysteine-type endopeptidase activity involved in execution phase of apoptosis Any process that initiates the activity of an inactive cysteine-type endopeptidase involved in the execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl activation of effector caspase activity Note that this term should only be used to annotate gene products directly involved in the initiation or start up of an inactive cysteine-type endopeptidase activity involved in the execution phase of apoptosis (also known as an effector caspase). If the evidence provided is not sufficient to account for direct activation of this enzymatic activity, consider using the more generic terms GO:2001272 positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis or GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. pr 2012-05-02T03:23:01Z biological_process owl:Class GO:2001272 biolink:NamedThing positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl positive regulation of effector caspase activity pr 2011-12-13T07:59:47Z biological_process owl:Class GO:0102778 biolink:NamedThing Delta9-tetrahydrocannabinolate synthase activity Catalysis of the reaction: cannabigerolate + O2 <=> Delta(9)-tetrahydrocannabinolic acid + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl RHEA:34135|EC:1.21.3.7|MetaCyc:RXN-7854 molecular_function owl:Class GO:0005307 biolink:NamedThing choline:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: choline(out) + Na+(out) = choline(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/choline symporter activity molecular_function owl:Class GO:0110046 biolink:NamedThing signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle A signal transduction process that contributes to cell cycle switching, mitotic to meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl kmv 2017-08-09T12:28:08Z biological_process owl:Class GO:0002901 biolink:NamedThing mature B cell apoptotic process Any apoptotic process in a B cell that is mature, having left the bone marrow. tmpzr1t_l9r_go_relaxed.owl mature B lymphocyte apoptosis|apoptosis of mature B-lymphocytes|mature B-cell apoptosis|mature B-lymphocyte apoptosis|mature B cell apoptosis|programmed cell death, mature B lymphocytes|programmed cell death of mature B cells by apoptosis|mature B lymphocyte programmed cell death by apoptosis|programmed cell death of mature B-lymphocytes by apoptosis|mature B cell programmed cell death by apoptosis|programmed cell death of mature B lymphocytes by apoptosis|programmed cell death, mature B cells|programmed cell death, mature B-lymphocytes|apoptosis of mature B-cells|programmed cell death, mature B-cells|programmed cell death of mature B-cells by apoptosis|apoptosis of mature B lymphocytes|apoptosis of mature B cells|mature B-cell programmed cell death by apoptosis|mature B-lymphocyte programmed cell death by apoptosis biological_process owl:Class GO:0010358 biolink:NamedThing leaf shaping The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed. tmpzr1t_l9r_go_relaxed.owl leaf structural organization biological_process owl:Class GO:0052684 biolink:NamedThing L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity Catalysis of the reaction: indole + L-serine = L-tryptophan + H2O. tmpzr1t_l9r_go_relaxed.owl L-serine hydro-lyase (adding indole; L-tryptophan-forming) activity|tryptophan synthase beta subunit activity RHEA:26434|KEGG_REACTION:R00674|EC:4.2.1.122|MetaCyc:RXN0-2382 molecular_function owl:Class GO:2000785 biolink:NamedThing regulation of autophagosome assembly Any process that modulates the frequency, rate or extent of autophagosome assembly. tmpzr1t_l9r_go_relaxed.owl regulation of autophagic vacuole formation|regulation of autophagosome formation|regulation of autophagosome biosynthesis|regulation of PAS formation|regulation of autophagic vacuole assembly rl 2011-06-24T11:19:08Z biological_process owl:Class GO:0015390 biolink:NamedThing purine-specific nucleoside:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: purine(out) + Na+(out) = nucleoside(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048158 biolink:NamedThing oogonium stage The stage in mammalian oogenesis when the primordial germ cell is hardly distinguishable from other cortical cells of the ovary. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 1 biological_process owl:Class GO:0015089 biolink:NamedThing high-affinity copper ion transmembrane transporter activity Enables the transfer of a copper ions (Cu2+) from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity copper transporter activity|high affinity copper ion transmembrane transporter activity molecular_function owl:Class GO:0002610 biolink:NamedThing regulation of plasmacytoid dendritic cell antigen processing and presentation Any process that modulates the frequency, rate, or extent of plasmacytoid dendritic cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060371 biolink:NamedThing regulation of atrial cardiac muscle cell membrane depolarization Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in an atrial cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl atrial depolarization|regulation of atrial cardiomyocyte membrane depolarization|electrocardiogram PR interval|regulation of atrial cardiac muscle cell depolarization biological_process owl:Class GO:0080012 biolink:NamedThing trihydroxyferuloyl spermidine O-methyltransferase activity Catalysis of the reaction: trihydroxyferuloyl spermidine + S-adenosyl-L-methionine = dihydroxyferuloyl-sinapoyl spermidine + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity MetaCyc:RXN-11263 molecular_function owl:Class GO:0102071 biolink:NamedThing 9,10-epoxy-18-hydroxystearate hydrolase activity Catalysis of the reaction: 9,10-epoxy-18-hydroxystearate + H2O <=> 9,10,18-trihydroxystearate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1065 molecular_function owl:Class GO:0036057 biolink:NamedThing slit diaphragm A specialized cell-cell junction found between the interdigitating foot processes of the glomerular epithelium (the podocytes) in the vertebrate kidney, which is adapted for facilitating glomerular filtration. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T04:36:42Z cellular_component owl:Class GO:0140275 biolink:NamedThing MIB complex A mitochondrial intermembrane space bridging complex consisting of components of the MICOS complex in the inner mitochondrial membrane, the SAM complex in the outer membrane, a conserved DNAJ protein (human DNAJC11) and Metaxin 1. tmpzr1t_l9r_go_relaxed.owl mitochondrial intermembrane space bridging complex|mitofilin complex pg 2018-10-01T17:10:27Z cellular_component owl:Class GO:0018141 biolink:NamedThing peptide cross-linking via L-lysine thiazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl lysine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0245 biological_process owl:Class GO:0120008 biolink:NamedThing positive regulation of glutamatergic neuron differentiation Any process that activates or increases the frequency, rate or extent of glutamatergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13107 krc 2017-03-01T16:35:45Z biological_process owl:Class GO:1901921 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex Any phosphorylation of RNA polymerase II C-terminal domain that is involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex. tmpzr1t_l9r_go_relaxed.owl CTD domain phosphorylation of RNA polymerase II involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex rb 2013-02-15T19:09:31Z biological_process owl:Class GO:0008241 biolink:NamedThing peptidyl-dipeptidase activity Catalysis of the release of C-terminal dipeptides from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl EC:3.4.15.- molecular_function owl:Class GO:0031004 biolink:NamedThing potassium ion-transporting ATPase complex Protein complex that carries out the reaction: ATP + H2O + K+(out) = ADP + phosphate + K+(in). It is a high affinity potassium uptake system. The E. coli complex consists of 4 proteins: KdpA is the potassium ion translocase, KdpB is the ATPase, and KdpC and KdpF seem to be involved in assembly and stabilization of the complex. tmpzr1t_l9r_go_relaxed.owl Kdp system complex cellular_component owl:Class GO:0090533 biolink:NamedThing cation-transporting ATPase complex Protein complex that carries out the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). tmpzr1t_l9r_go_relaxed.owl tb 2013-02-07T15:50:28Z cellular_component owl:Class GO:0046786 biolink:NamedThing viral replication complex formation and maintenance The process of organizing and assembling viral replication proteins in preparation for viral replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047791 biolink:NamedThing cucurbitacin delta23-reductase activity Catalysis of the reaction: 23,24-dihydrocucurbitacin + NAD(P)+ = cucurbitacin + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl cucurbitacin delta(23) reductase activity|cucurbitacin D23-reductase activity|23,24-dihydrocucurbitacin:NAD(P)+ delta23-oxidoreductase activity|NAD(P)H: cucurbitacin B delta23-oxidoreductase activity EC:1.3.1.5|MetaCyc:CUCURBITACIN-DELTA-23-REDUCTASE-RXN molecular_function owl:Class GO:0060749 biolink:NamedThing mammary gland alveolus development The progression of the mammary gland alveolus over time, from its formation to its mature state. The mammary gland alveolus is a sac-like structure that is found in the mature gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T10:52:12Z biological_process owl:Class GO:0001406 biolink:NamedThing glycerophosphodiester transmembrane transporter activity Enables the transfer of glycerophosphodiesters from one side of a membrane to the other. Glycerophosphodiesters are small molecules composed of glycerol-3-phosphate and an alcohol, for example, glycerophosphoinositol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016113 biolink:NamedThing polyterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of polyterpenoid compounds, terpenoids with more than eight isoprene units. tmpzr1t_l9r_go_relaxed.owl polyterpenoid catabolism|polyterpene catabolism|polyterpenoid degradation|polyterpenoid breakdown|polyterpene catabolic process biological_process owl:Class GO:0036265 biolink:NamedThing RNA (guanine-N7)-methylation The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl bf 2012-06-25T10:28:25Z biological_process owl:Class GO:0097239 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to methylglyoxal Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to a methylglyoxal stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-02T12:28:46Z biological_process owl:Class GO:0102325 biolink:NamedThing 2,2',3-trihydroxybiphenyl monooxygenase activity Catalysis of the reaction: biphenyl-2,2',3-triol + O2 + NADH + H+ <=> 2,2',3,3'-tetrahydroxybiphenyl + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:63516|MetaCyc:RXN-13169 molecular_function owl:Class GO:0060315 biolink:NamedThing negative regulation of ryanodine-sensitive calcium-release channel activity Any process that decreases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061051 biolink:NamedThing positive regulation of cell growth involved in cardiac muscle cell development Any process that increases the rate, frequency, or extent of the growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-25T01:08:08Z biological_process owl:Class GO:0033947 biolink:NamedThing mannosylglycoprotein endo-beta-mannosidase activity Catalysis of the hydrolysis of the alpha-D-mannosyl-(1->6)-beta-D-mannosyl-(1->4)-beta-D-N-acetylglucosaminyl-(1->4)-beta-D-N-acetylglucosaminyl sequence of glycoprotein to alpha-D-mannosyl-(1->6)-D-mannose and beta-D-N-acetylglucosaminyl-(1->4)-beta-D-N-acetylglucosaminyl sequences. tmpzr1t_l9r_go_relaxed.owl endo-beta-mannosidase activity MetaCyc:3.2.1.152-RXN|EC:3.2.1.152 molecular_function owl:Class GO:0046694 biolink:NamedThing sperm incapacitation The process in which the use of stored sperm from the first-mating male is inhibited by the seminal fluid of subsequently mating males. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904307 biolink:NamedThing response to desipramine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desipramine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T17:00:31Z biological_process owl:Class GO:0005608 biolink:NamedThing laminin-3 complex A laminin complex composed of alpha1, beta2 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-121 complex cellular_component owl:Class GO:1902800 biolink:NamedThing positive regulation of phosphodiesterase I activity Any process that activates or increases the frequency, rate or extent of phosphodiesterase I activity. tmpzr1t_l9r_go_relaxed.owl up regulation of exonuclease I activity|positive regulation of PDE I activity|up regulation of alkaline phosphodiesterase activity|activation of oligonucleate 5'-nucleotidohydrolase activity|positive regulation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|up-regulation of alkaline phosphodiesterase activity|positive regulation of 5'-nucleotide phosphodiesterase activity|activation of phosphodiesterase I activity|up regulation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|up-regulation of 5'-PDase activity|up regulation of 5'NPDE activity|activation of alkaline phosphodiesterase activity|up-regulation of nucleotide pyrophosphatase/phosphodiesterase I activity|up-regulation of 5'-PDE activity|up regulation of oligonucleate 5'-nucleotidohydrolase activity|positive regulation of 5'-NPDase activity|activation of 5'-PDE activity|up-regulation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|upregulation of phosphodiesterase I activity|positive regulation of oligonucleate 5'-nucleotidohydrolase activity|up-regulation of 5'NPDE activity|up regulation of 5'-NPDase activity|activation of 5'NPDE activity|up-regulation of 5'-exonuclease activity|positive regulation of 5'-exonuclease activity|upregulation of orthophosphoric diester phosphohydrolase activity|up regulation of 5'-nucleotide phosphodiesterase activity|positive regulation of 5'NPDE activity|activation of 5'-PDase activity|up regulation of 5'-PDE activity|upregulation of 5'-exonuclease activity|activation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|up regulation of 5'-exonuclease activity|upregulation of oligonucleate 5'-nucleotidohydrolase activity|up-regulation of PDE I activity|upregulation of 5'NPDE activity|activation of PDE I activity|up regulation of PDE I activity|positive regulation of 5'-PDase activity|up-regulation of oligonucleate 5'-nucleotidohydrolase activity|upregulation of exonuclease I activity|upregulation of 5'-nucleotide phosphodiesterase activity|positive regulation of nucleotide pyrophosphatase/phosphodiesterase I activity|upregulation of 5'-PDase activity|upregulation of alkaline phosphodiesterase activity|upregulation of 5'-PDE activity|activation of nucleotide pyrophosphatase/phosphodiesterase I activity|up-regulation of 5'-nucleotide phosphodiesterase activity|activation of exonuclease I activity|positive regulation of exonuclease I activity|positive regulation of orthophosphoric diester phosphohydrolase activity|upregulation of 5'-phosphodiesterase activity|upregulation of nucleotide pyrophosphatase/phosphodiesterase I activity|up-regulation of exonuclease I activity|up-regulation of 5'-phosphodiesterase activity|activation of 5'-phosphodiesterase activity|activation of 5'-NPDase activity|upregulation of 5' nucleotide phosphodiesterase/alkaline phosphodiesterase I activity|up regulation of 5'-PDase activity|positive regulation of 5'-PDE activity|activation of 5'-exonuclease activity|upregulation of 5'-NPDase activity|upregulation of PDE I activity|positive regulation of alkaline phosphodiesterase activity|positive regulation of 5'-phosphodiesterase activity|up-regulation of phosphodiesterase I activity|up regulation of phosphodiesterase I activity|up regulation of orthophosphoric diester phosphohydrolase activity|up-regulation of 5'-NPDase activity|up regulation of nucleotide pyrophosphatase/phosphodiesterase I activity|up regulation of 5'-phosphodiesterase activity|up-regulation of orthophosphoric diester phosphohydrolase activity|activation of orthophosphoric diester phosphohydrolase activity|activation of 5'-nucleotide phosphodiesterase activity al 2014-03-25T08:55:54Z biological_process owl:Class GO:1901289 biolink:NamedThing succinyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA degradation|succinyl-CoA catabolism|succinyl-CoA breakdown yaf 2012-08-17T16:13:37Z biological_process owl:Class GO:0050512 biolink:NamedThing lactosylceramide 4-alpha-galactosyltransferase activity Catalysis of the reaction: beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = alpha-D-galactosyl-(1,4)-beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl histo-blood group P(k) UDP-galactose activity|Gal-beta-1,4-Glc-beta-1-Cer alpha-1,4-galactosyltransferase activity|histo-blood group Pk UDP-galactose|UDP-galactose:lactosylceramide 4II-alpha-D-galactosyltransferase activity|lactosylceramide 4-a-galactosyltransferase activity|Gal-beta-(1,4)-Glc-beta-1-Cer alpha-(1,4)-galactosyltransferase activity|globotriaosylceramide/CD77 synthase activity RHEA:11924|EC:2.4.1.228|MetaCyc:2.4.1.228-RXN molecular_function owl:Class GO:0031876 biolink:NamedThing secretin receptor binding Binding to a secretin receptor. tmpzr1t_l9r_go_relaxed.owl secretin receptor ligand molecular_function owl:Class GO:0018650 biolink:NamedThing styrene monooxygenase activity Catalysis of the reaction: styrene + NADPH + FADH + O2 = NADP+ + FAD+ + H2O + styrene oxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0225 molecular_function owl:Class GO:1902771 biolink:NamedThing positive regulation of choline O-acetyltransferase activity Any process that activates or increases the frequency, rate or extent of choline O-acetyltransferase activity. tmpzr1t_l9r_go_relaxed.owl up-regulation of choline acetyltransferase activity|upregulation of choline O-acetyltransferase activity|activation of CHOACTase activity|positive regulation of choline acetyltransferase activity|activation of choline acetylase activity|up regulation of choline acetylase activity|up regulation of choline acetyltransferase activity|upregulation of acetyl-CoA:choline O-acetyltransferase activity|activation of choline acetyltransferase activity|up regulation of CHOACTase activity|up regulation of choline O-acetyltransferase activity|up regulation of acetyl-CoA:choline O-acetyltransferase activity|upregulation of choline acetyltransferase activity|positive regulation of choline acetylase activity|upregulation of choline acetylase activity|positive regulation of CHOACTase activity|up-regulation of CHOACTase activity|activation of choline O-acetyltransferase activity|up-regulation of acetyl-CoA:choline O-acetyltransferase activity|up-regulation of choline O-acetyltransferase activity|upregulation of CHOACTase activity|positive regulation of acetyl-CoA:choline O-acetyltransferase activity|up-regulation of choline acetylase activity|activation of acetyl-CoA:choline O-acetyltransferase activity mr 2014-03-11T18:58:39Z biological_process owl:Class GO:0033063 biolink:NamedThing Rad51B-Rad51C-Rad51D-XRCC2 complex A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof. tmpzr1t_l9r_go_relaxed.owl BCDX2 complex cellular_component owl:Class GO:0071233 biolink:NamedThing cellular response to leucine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:09:26Z biological_process owl:Class GO:1990410 biolink:NamedThing adrenomedullin receptor signaling pathway A series of molecular signals initiated by an extracellular adrenomedullin combining with a dimeric adrenomedullin receptor on the surface of the target cell. tmpzr1t_l9r_go_relaxed.owl AM receptor signaling pathway An example of a protein that could be annotated to this term is CALCRL in human (Q16602) in PMID:10882736. bhm 2014-07-02T14:43:31Z biological_process owl:Class GO:0045019 biolink:NamedThing negative regulation of nitric oxide biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide. tmpzr1t_l9r_go_relaxed.owl downregulation of nitric oxide biosynthetic process|negative regulation of nitric oxide biosynthesis|down-regulation of nitric oxide biosynthetic process|negative regulation of nitric oxide anabolism|down regulation of nitric oxide biosynthetic process|negative regulation of nitric oxide synthesis|inhibition of nitric oxide biosynthetic process|negative regulation of nitric oxide formation biological_process owl:Class GO:0036114 biolink:NamedThing medium-chain fatty-acyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of medium-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a medium-chain fatty-acyl group. A medium-chain fatty acid is a fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium-chain fatty-acyl-CoA catabolism|medium-chain fatty-acyl-CoA degradation|medium-chain fatty-acyl-CoA breakdown bf 2012-02-15T11:23:16Z biological_process owl:Class GO:1990462 biolink:NamedThing omegasome Omega-shaped (as in the Greek capital letter) intracellular membrane-bounded organelle enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. Omegasomes are the first step of the formation of autophagosomes via the phagophore assembly sites. tmpzr1t_l9r_go_relaxed.owl pr 2014-08-19T12:26:40Z cellular_component owl:Class GO:1902907 biolink:NamedThing proteasome storage granule disassembly The disaggregation of a proteasome storage granule into its constituent components. tmpzr1t_l9r_go_relaxed.owl PSG disassembly di 2014-04-16T01:59:47Z biological_process owl:Class GO:0102684 biolink:NamedThing L-phenylalanine N-monooxygenase activity Catalysis of the reaction: L-phenylalanine + 2 NADPH + 2 O2 + 2 H+ <=> (E)-phenylacetaldehyde oxime + 2 NADP + 3 H2O + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4602|RHEA:33263|EC:1.14.14.40 molecular_function owl:Class GO:1902936 biolink:NamedThing phosphatidylinositol bisphosphate binding Binding to phosphatidylinositol bisphosphate. tmpzr1t_l9r_go_relaxed.owl An example of this is KCNJ2 in human (P63252) in PMID:18690034 (inferred from direct assay) bhm 2014-04-25T15:14:12Z molecular_function owl:Class GO:0001921 biolink:NamedThing positive regulation of receptor recycling Any process that activates or increases the frequency, rate or extent of receptor recycling. tmpzr1t_l9r_go_relaxed.owl stimulation of receptor recycling|up-regulation of receptor recycling|activation of receptor recycling|up regulation of receptor recycling|upregulation of receptor recycling biological_process owl:Class GO:0016938 biolink:NamedThing kinesin I complex A complex of two kinesin heavy chains and two kinesin light chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120286 biolink:NamedThing tryptophan sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of tryptophan. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20181 krc 2020-11-18T01:25:01Z molecular_function owl:Class GO:0044535 biolink:NamedThing very-long-chain fatty acyl-CoA oxidase activity Catalysis of the reaction: very-long-chain fatty acyl-CoA (C22 - C24) + O2 = trans-2,3-dehydroacyl-CoA + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl very-long-chain acyl-CoA oxidase activity|VLC fatty-acyl-CoA oxidase activity|very long chain fatty-acyl-CoA oxidase activity EC:1.3.3.- jl 2012-03-21T02:04:42Z molecular_function owl:Class GO:0021852 biolink:NamedThing pyramidal neuron migration to cerebral cortex The migration of a pyramidal neuron precursor from the ventricular zone to the correct layer of the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl pyramidal neuron migration|projection neuron migration https://github.com/geneontology/go-ontology/issues/21476 biological_process owl:Class GO:0140650 biolink:NamedThing radial glia-guided pyramidal neuron migration The radial migration of a pyramidal neuron along radial glial cells. tmpzr1t_l9r_go_relaxed.owl radial glia-dependent neuronal migration https://github.com/geneontology/go-ontology/issues/21476 pg 2021-05-25T12:48:12Z biological_process owl:Class GO:0004796 biolink:NamedThing thromboxane-A synthase activity Catalysis of the reaction: prostaglandin H(2) = thromboxane A(2). tmpzr1t_l9r_go_relaxed.owl thromboxane synthetase activity|(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate isomerase activity|cytochrome P450 CYP5|(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate thromboxane-A2-isomerase activity|thromboxane synthase activity KEGG_REACTION:R02268|RHEA:17137|Reactome:R-HSA-5603275|EC:5.3.99.5|MetaCyc:THROMBOXANE-A-SYNTHASE-RXN|Reactome:R-HSA-76500 GO:0008400 molecular_function owl:Class GO:0050547 biolink:NamedThing vanillin synthase activity Catalysis of the reaction: 3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propanoyl-CoA = acetyl-CoA + vanillin. tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propanoyl-CoA vanillin-lyase (acetyl-CoA-forming)|3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propionyl-CoA:vanillin lyase (acetyl-CoA-forming) KEGG_REACTION:R05773|MetaCyc:4.1.2.41-RXN|EC:4.1.2.61|RHEA:18725 molecular_function owl:Class GO:0046397 biolink:NamedThing galacturonate catabolic process The chemical reactions and pathways resulting in the breakdown of galacturonate, the anion of galacturonic acid. tmpzr1t_l9r_go_relaxed.owl galacturonate breakdown|galacturonate catabolism|galacturonate degradation GO:0019587 biological_process owl:Class GO:0045103 biolink:NamedThing intermediate filament-based process Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902620 biolink:NamedThing positive regulation of microtubule minus-end binding Any process that activates or increases the frequency, rate or extent of microtubule minus-end binding. tmpzr1t_l9r_go_relaxed.owl up-regulation of microtubule minus-end binding|activation of microtubule minus-end binding|up regulation of microtubule minus-end binding|upregulation of microtubule minus-end binding tb 2014-01-14T22:17:25Z biological_process owl:Class GO:0052200 biolink:NamedThing response to host defenses Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl maintenance of symbiont tolerance to host defense molecules|response to host defense molecules|response of symbiont to host defense molecules https://github.com/geneontology/go-ontology/issues/18827|https://github.com/geneontology/go-ontology/issues/18951 Note that this term is used to annotate gene products of the symbiont. GO:0075140|GO:0075145 biological_process owl:Class GO:0052173 biolink:NamedThing response to defenses of other organism Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of another organism. tmpzr1t_l9r_go_relaxed.owl response to defenses of other organism during symbiotic interaction|response to defenses of other organism involved in symbiotic interaction https://github.com/geneontology/go-ontology/issues/17930 biological_process owl:Class GO:0030921 biolink:NamedThing peptidyl-tyrosine dehydrogenation to form (Z)-2,3-didehydrotyrosine The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-(Z)-2,3-didehydrotyrosine coupled with cyclization of neighboring residues. tmpzr1t_l9r_go_relaxed.owl RESID:AA0183 biological_process owl:Class GO:1990317 biolink:NamedThing Gin4 complex A protein complex involved in septin ring formation during mitosis. In Saccharomyces cerevisiae it consists of BNI5, CDC3, CDC10, CDC11, CDC12, GIN4, NAP1 and SHS1. At least 2 GIN4 molecules are involved. tmpzr1t_l9r_go_relaxed.owl Gin4-septin complex bhm 2014-03-14T12:07:05Z cellular_component owl:Class GO:0036240 biolink:NamedThing septal periplasm The region between the plasma membrane and the cell wall, as found in organisms such as filamentous fungi. tmpzr1t_l9r_go_relaxed.owl cell wall-enclosed septal periplasm bf 2012-05-23T10:18:09Z cellular_component owl:Class GO:0007568 biolink:NamedThing aging A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700). tmpzr1t_l9r_go_relaxed.owl ageing Wikipedia:Aging GO:0016280 biological_process owl:Class GO:0032372 biolink:NamedThing negative regulation of sterol transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of sterols into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl downregulation of sterol transport|down-regulation of sterol transport|down regulation of sterol transport|inhibition of sterol transport biological_process owl:Class GO:0019678 biolink:NamedThing propionate metabolic process, methylmalonyl pathway The chemical reactions and pathways involving propionate that occur in the methylmalonyl pathway. tmpzr1t_l9r_go_relaxed.owl propionate metabolism, methylmalonyl pathway MetaCyc:PROPIONMET-PWY biological_process owl:Class GO:0102971 biolink:NamedThing phosphinothricin N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + phosphinothricin <=> H+ + coenzyme A(4-) + N-acetylphosphinatothricinate. tmpzr1t_l9r_go_relaxed.owl RHEA:12597|EC:2.3.1.183|MetaCyc:RXN-9382 molecular_function owl:Class GO:0060736 biolink:NamedThing prostate gland growth The increase in size or mass of the prostate gland where the increase in size or mass has the specific outcome of the progression of the gland, from its formation to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-15T09:21:52Z biological_process owl:Class GO:2000814 biolink:NamedThing positive regulation of barbed-end actin filament capping Any process that activates or increases the frequency, rate or extent of barbed-end actin filament capping. tmpzr1t_l9r_go_relaxed.owl positive regulation of barbed-end F-actin capping activity|positive regulation of barbed-end actin capping activity|positive regulation of plus-end F-actin capping activity|positive regulation of plus-end actin filament capping activity rl 2011-07-07T04:08:23Z biological_process owl:Class GO:0061435 biolink:NamedThing positive regulation of transcription from a mobile element promoter Any process that activates or increases the frequency, rate or extent of transcription from a mobile element promoter. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-09T10:01:33Z biological_process owl:Class GO:0033757 biolink:NamedThing glucoside 3-dehydrogenase activity Catalysis of the reaction: sucrose + acceptor = 3-dehydro-alpha-D-glucosyl-beta-D-fructofuranoside + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-aldohexoside:(acceptor) 3-oxidoreductase|D-aldohexopyranoside dehydrogenase|D-aldohexoside:cytochrome c oxidoreductase|D-aldohexoside:acceptor 3-oxidoreductase|hexopyranoside-cytochrome c oxidoreductase RHEA:16589|MetaCyc:GLUCOSIDE-3-DEHYDROGENASE-RXN|EC:1.1.99.13|Wikipedia:Glucoside_3-dehydrogenase molecular_function owl:Class GO:1990168 biolink:NamedThing protein K33-linked deubiquitination A protein deubiquitination process in which a K33-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 33 of the ubiquitin monomers, is removed from a protein. tmpzr1t_l9r_go_relaxed.owl sp 2013-08-14T11:19:39Z biological_process owl:Class GO:1904425 biolink:NamedThing negative regulation of GTP binding Any process that stops, prevents or reduces the frequency, rate or extent of GTP binding. tmpzr1t_l9r_go_relaxed.owl inhibition of GTP binding|down regulation of GTP binding|downregulation of GTP binding|down-regulation of GTP binding sl 2015-07-02T20:35:01Z biological_process owl:Class GO:0046289 biolink:NamedThing isoflavonoid phytoalexin metabolic process The chemical reactions and pathways involving isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl isoflavonoid phytoalexin metabolism biological_process owl:Class GO:0009258 biolink:NamedThing 10-formyltetrahydrofolate catabolic process The chemical reactions and pathways resulting in the breakdown of 10-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl 10-formyl-THF catabolic process|10-formyltetrahydrofolate breakdown|10-formyltetrahydrofolate degradation|10-formyl-THF catabolism|10-formyltetrahydrofolate catabolism biological_process owl:Class GO:0103027 biolink:NamedThing FMN phosphatase activity Catalysis of the reaction: FMN + H2O = riboflavin + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5187 molecular_function owl:Class GO:0050348 biolink:NamedThing trehalose O-mycolyltransferase activity Catalysis of the reaction: 2 alpha,alpha'-trehalose 6-mycolate = alpha,alpha'-trehalose 6,6'-bismycolate + alpha,alpha-trehalose. tmpzr1t_l9r_go_relaxed.owl alpha,alpha'-trehalose-6-mycolate:alpha,alpha'-trehalose-6-mycolate 6'-mycolyltransferase activity|alpha,alpha'-trehalose 6-monomycolate:alpha,alpha'-trehalose mycolyltransferase activity KEGG_REACTION:R07248|RHEA:23472|MetaCyc:RXN1G-874|EC:2.3.1.122 molecular_function owl:Class GO:0004096 biolink:NamedThing catalase activity Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl haem catalase activity|bacterial catalase-peroxidase activity|CAT|caperase activity|catalase-peroxidase activity|equilase activity|hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|optidase activity|heme catalase activity|catalase reaction|manganese catalase activity UM-BBD_enzymeID:e0834|Reactome:R-HSA-76031|Reactome:R-HSA-1222704|EC:1.11.1.6|RHEA:20309|MetaCyc:CATAL-RXN GO:0016952|GO:0016953 molecular_function owl:Class GO:0099055 biolink:NamedThing integral component of postsynaptic membrane The component of the postsynaptic membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048495 biolink:NamedThing Roundabout binding Binding to Roundabout (ROBO) receptor, a transmembrane receptor. tmpzr1t_l9r_go_relaxed.owl Roundabout receptor binding molecular_function owl:Class GO:0090078 biolink:NamedThing smooth muscle derived foam cell differentiation The process in which a smooth muscle cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-15T03:48:10Z biological_process owl:Class GO:0090077 biolink:NamedThing foam cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-15T03:46:30Z biological_process owl:Class GO:0048490 biolink:NamedThing anterograde synaptic vesicle transport The directed movement of synaptic vesicle along axonal microtubules from the cell body to the presynapse. tmpzr1t_l9r_go_relaxed.owl anterograde axonal transport of synaptic vesicle biological_process owl:Class GO:0044172 biolink:NamedThing host cell endoplasmic reticulum-Golgi intermediate compartment A complex system of membrane-bounded compartments located between host cell endoplasmic reticulum (ER) and the host Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport. tmpzr1t_l9r_go_relaxed.owl host cell ER-Golgi intermediate compartment|host ER-Golgi intermediate compartment jl 2009-09-04T02:44:07Z cellular_component owl:Class GO:0047021 biolink:NamedThing 15-hydroxyprostaglandin dehydrogenase (NADP+) activity Catalysis of the reaction: NADP(+) + prostaglandin E(1) = 15-dehydro-prostaglandin E1 + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl type II 15-hydroxyprostaglandin dehydrogenase activity|NADP-linked 15-hydroxyprostaglandin dehydrogenase|NADP-specific 15-hydroxyprostaglandin dehydrogenase|(13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate:NADP+ 15-oxidoreductase activity|NADP-dependent 15-hydroxyprostaglandin dehydrogenase MetaCyc:1.1.1.197-RXN|KEGG_REACTION:R04552|EC:1.1.1.197|RHEA:11636 molecular_function owl:Class GO:0075189 biolink:NamedThing positive regulation of hyphopodium formation Any process that activates or increases the frequency, rate or extent of symbiont hyphopodium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of hyphopodium formation on or near host biological_process owl:Class GO:0070143 biolink:NamedThing mitochondrial alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA in a mitochondrion, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019345 biolink:NamedThing cysteine biosynthetic process via S-sulfo-L-cysteine The chemical reactions and pathways resulting in the formation of cysteine, via the intermediate S-sulfo-L-cysteine. tmpzr1t_l9r_go_relaxed.owl cysteine synthesis via S-sulfo-L-cysteine|cysteine biosynthetic process via S-sulpho-L-cysteine|cysteine biosynthesis via S-sulpho-L-cysteine|cysteine formation via S-sulfo-L-cysteine|cysteine anabolism via S-sulfo-L-cysteine biological_process owl:Class GO:0019344 biolink:NamedThing cysteine biosynthetic process The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. tmpzr1t_l9r_go_relaxed.owl cysteine synthesis|cysteine biosynthesis|cysteine formation|cysteine anabolism biological_process owl:Class GO:0004814 biolink:NamedThing arginine-tRNA ligase activity Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). tmpzr1t_l9r_go_relaxed.owl arginyl-transfer ribonucleate synthetase activity|arginine-tRNA synthetase activity|arginine translase activity|arginyl-transfer RNA synthetase activity|L-arginine:tRNAArg ligase (AMP-forming)|arginyl transfer ribonucleic acid synthetase activity|arginyl-tRNA synthetase activity RHEA:20301|Reactome:R-HSA-380224|Reactome:R-HSA-379993|MetaCyc:ARGININE--TRNA-LIGASE-RXN|EC:6.1.1.19 molecular_function owl:Class GO:0004361 biolink:NamedThing glutaryl-CoA dehydrogenase activity Catalysis of the reaction: glutaryl-CoA + acceptor = crotonoyl-CoA + CO2 + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl glutaryl-CoA:acceptor 2,3-oxidoreductase (decarboxylating)|glutaryl-CoA:(acceptor) 2,3-oxidoreductase (decarboxylating)|glutaryl coenzyme A dehydrogenase activity Reactome:R-HSA-71046|MetaCyc:GLUTARYL-COA-DEHYDROGENASE-RXN|UM-BBD_reactionID:r0198|EC:1.3.8.6|RHEA:13389 molecular_function owl:Class GO:0120301 biolink:NamedThing histone lactyltransferase activity Catalysis of the reaction: (L-lysyl-[histone] + lactoyl-CoA = CoA + H(+) + N(6)-lactoyl-L-lysyl-[histone]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 krc 2021-01-19T03:38:56Z molecular_function owl:Class GO:0120300 biolink:NamedThing peptide lactyltransferase activity Catalysis of the reaction: (L-lysyl-[protein] + lactoyl-CoA = CoA + H(+) + N(6)-lactoyl-L-lysyl-[protein]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 RHEA:61996 krc 2021-01-19T03:35:54Z molecular_function owl:Class GO:2000812 biolink:NamedThing regulation of barbed-end actin filament capping Any process that modulates the frequency, rate or extent of barbed-end actin filament capping. tmpzr1t_l9r_go_relaxed.owl regulation of barbed-end F-actin capping activity|regulation of plus-end actin filament capping activity|regulation of plus-end F-actin capping activity|regulation of barbed-end actin capping activity rl 2011-07-07T04:08:13Z biological_process owl:Class GO:1990215 biolink:NamedThing negative regulation by symbiont of host intracellular transport Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of intracellular transport in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-10T15:42:22Z biological_process owl:Class GO:0097086 biolink:NamedThing amniotic stem cell differentiation The process whereby a relatively unspecialized cell acquires specialized features of an amniotic stem cell. An amniotic stem cell is a mesenchymal stem cell extracted from amniotic fluid. Amniotic stem cells are able to differentiate into various tissue types such as skin, cartilage, cardiac tissue, nerves, muscle, and bone. tmpzr1t_l9r_go_relaxed.owl pr 2011-06-22T11:17:52Z biological_process owl:Class GO:0003200 biolink:NamedThing endocardial cushion to mesenchymal transition involved in heart chamber septation A transition where an endocardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the heart septum. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:34:31Z biological_process owl:Class GO:0051358 biolink:NamedThing peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine The formation of the non-fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a glutamic acid, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. This modification is found in the GFP-like non-fluorescent red chromoprotein from the sea anemone Radianthus macrodactylus. tmpzr1t_l9r_go_relaxed.owl biosynthesis of protein-protein cross-link via 2-imino-glutamic acid 5-imidazolinone glycine|biosynthetic process of protein-protein cross-link via 2-imino-glutamic acid 5-imidazolinone glycine RESID:AA0378 See also the biological process term 'peptidyl-tyrosine dehydrogenation ; GO:0018251'. biological_process owl:Class GO:0034292 biolink:NamedThing pinholin activity A compound function consisting of the regulated formation of a pore via oligomerisation of an existing pool of subunits in the plasma membrane. The resulting ion channel activity indirectly allows endolysin (murein hydrolyases) to access their cell wall substrate by collapsing the proton motive force (PMF) across the membrane, allowing the endolysin to fold to an active form and hydrolyze bonds in the peptidoglycan cell wall. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004720 biolink:NamedThing protein-lysine 6-oxidase activity Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl lysyl oxidase activity|protein-L-lysine:oxygen 6-oxidoreductase (deaminating) EC:1.4.3.13|Reactome:R-HSA-2129375|Reactome:R-HSA-2002466|Reactome:R-HSA-2395340|RHEA:24544|MetaCyc:PROTEIN-LYSINE-6-OXIDASE-RXN GO:0018056 molecular_function owl:Class GO:0004165 biolink:NamedThing dodecenoyl-CoA delta-isomerase activity Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA. tmpzr1t_l9r_go_relaxed.owl dodecenoyl-CoA isomerase activity|dodecenoyl-CoA delta3-cis-delta2-trans-isomerase activity|3,2-trans-enoyl-CoA isomerase activity|acetylene-allene isomerase activity|dodecenoyl-CoA D-isomerase activity|delta(3),Delta(2)-enoyl-CoA isomerase activity|delta3,Delta2-enoyl-CoA isomerase activity|dodecenoyl-CoA (3Z)-(2E)-isomerase activity|delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase activity|delta3-cis-delta2-trans-enoyl-CoA isomerase RHEA:23716|MetaCyc:ENOYL-COA-DELTA-ISOM-RXN|Reactome:R-HSA-6809808|Reactome:R-HSA-109338|EC:5.3.3.8 GO:0008461 molecular_function owl:Class GO:0048179 biolink:NamedThing activin receptor complex A protein complex that acts as an activin receptor. Heterodimeric activin receptors, comprising one Type I activin receptor and one Type II receptor polypeptide, and heterotrimeric receptors have been observed. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035737 biolink:NamedThing injection of substance in to other organism The process of forcing a substance into another organism, either by penetrating the skin of the other organism or by applying the substance externally to a sensitive tissue such as those that surround the eyes. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T10:58:57Z biological_process owl:Class GO:0021776 biolink:NamedThing smoothened signaling pathway involved in spinal cord motor neuron cell fate specification The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the spinal cord that contributes to the process of a precursor cell becoming capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl smoothened signalling pathway involved in spinal cord motor neuron cell fate specification|hh signaling pathway involved in spinal cord motor neuron cell fate specification|hedgehog signaling pathway involved in spinal cord motor neuron cell fate specification biological_process owl:Class GO:0140406 biolink:NamedThing L-alanine export across the plasma membrane The directed movement of L-alanine from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl pg 2019-12-11T14:13:07Z biological_process owl:Class GO:0098982 biolink:NamedThing GABA-ergic synapse A synapse that uses GABA as a neurotransmitter. These synapses are typically inhibitory. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010346 biolink:NamedThing shoot axis formation The process that gives rise to a shoot axis. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl shoot formation biological_process owl:Class GO:0000038 biolink:NamedThing very long-chain fatty acid metabolic process The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very-long-chain fatty acid metabolic process|very-long-chain fatty acid metabolism|very long chain fatty acid metabolic process biological_process owl:Class GO:0010967 biolink:NamedThing regulation of polyamine biosynthetic process Any process that modulates the frequency, rate or extent of polyamine biosynthesis. Polyamine biosynthesis is the chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. tmpzr1t_l9r_go_relaxed.owl tb 2009-05-20T11:45:37Z biological_process owl:Class GO:0009001 biolink:NamedThing serine O-acetyltransferase activity Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:L-serine O-acetyltransferase activity|SATase activity|serine acetyltransferase activity|serine transacetylase activity|L-serine acetyltransferase activity EC:2.3.1.30|KEGG_REACTION:R00586|MetaCyc:SERINE-O-ACETTRAN-RXN|RHEA:24560 molecular_function owl:Class GO:0098875 biolink:NamedThing epididymosome A microvesicle of the epididymal fluid, from which spermatozoa aquire membrane proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050157 biolink:NamedThing ornithine racemase activity Catalysis of the reaction: L-ornithine = D-ornithine. tmpzr1t_l9r_go_relaxed.owl RHEA:11584|MetaCyc:ORNITHINE-RACEMASE-RXN|EC:5.1.1.12 molecular_function owl:Class GO:0070140 biolink:NamedThing SUMO-specific isopeptidase activity Catalysis of the hydrolysis of an isopeptide bond between the small conjugating protein SUMO and a protein to which SUMO has been conjugated. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904347 biolink:NamedThing regulation of small intestine smooth muscle contraction Any process that modulates the frequency, rate or extent of small intestine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-11T21:37:34Z biological_process owl:Class GO:0102086 biolink:NamedThing N-vanillate-L-glutamate synthetase activity Catalysis of the reaction: vanillate + L-glutamate(1-) + ATP <=> H+ + N-vanillate-L-glutamate + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10885 molecular_function owl:Class GO:0000418 biolink:NamedThing RNA polymerase IV complex RNA polymerase IV is a multisubunit RNA polymerase complex found in the nucleus of plants and involved in accumulation of siRNAs and in DNA methylation-dependent silencing of endogenous repeated sequences. Pol IV is composed of subunits that are paralogous or identical to the 12 subunits of Pol II. The largest and second-largest subunits of Pol IV are the catalytic subunits and share similarity with the corresponding subunits of other eukaryotic and bacterial multisubunit RNA polymerases. The second largest subunit is also found in RNA polymerase V, while the largest subunit is found only in RNAP IV complex. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase IV complex|DNA-directed RNA polymerase IVa complex GO:0000420 cellular_component owl:Class GO:0033450 biolink:NamedThing GUC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GUC codon. tmpzr1t_l9r_go_relaxed.owl GTC codon-amino acid adaptor activity|valine tRNA Note that in the standard genetic code, GTC codes for valine. molecular_function owl:Class GO:0050378 biolink:NamedThing UDP-glucuronate 4-epimerase activity Catalysis of the reaction: UDP-alpha-D-glucuronate = UDP-alpha-D-galacturonate. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucuronate epimerase activity|UDP-D-galacturonic acid 4-epimerase activity|UDPglucuronate 4-epimerase activity|UDP glucuronic epimerase activity|uridine diphospho-D-galacturonic acid|UDP-galacturonate 4-epimerase activity|uridine diphosphoglucuronic epimerase activity RHEA:11404|KEGG_REACTION:R01385|EC:5.1.3.6|MetaCyc:UDP-GLUCURONATE-4-EPIMERASE-RXN|MetaCyc:PWY-4861 molecular_function owl:Class GO:0030698 biolink:NamedThing 5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity Catalysis of the transfer of a methyl group from 5,10-methylenetetrahydrofolate to the C5 atom of the uridine residue at position 54 in a tRNA molecule. This occurs in most Gram-positive bacteria and some Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl RUMT molecular_function owl:Class GO:0030696 biolink:NamedThing tRNA (m5U54) methyltransferase activity Catalysis of the transfer of a methyl group from a donor to the C5 atom of the uridine residue at position 54 in a tRNA molecule. tmpzr1t_l9r_go_relaxed.owl RUMT Note that the term name mentions a specific position within a tRNA because no other names have yet arisen for this activity, and because the position is conserved in nearly all tRNAs. The term nevertheless can be used for activities that methylase an analogous residue at a position other than 54, if such is found, and synonyms that mention positions applicable to other tRNAs or species may also be added. molecular_function owl:Class GO:0097602 biolink:NamedThing cullin family protein binding Binding to a member of the cullin family, hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). tmpzr1t_l9r_go_relaxed.owl cullin binding pr 2014-05-11T20:41:10Z molecular_function owl:Class GO:0050693 biolink:NamedThing LBD domain binding Binding to a protein's ligand binding domain (LBD) domain, found in nuclear receptors. In general, the LBDs consist of three layers comprised of twelve alpha-helices and several beta-strands that are organized around a lipophilic ligand-binding pocket. tmpzr1t_l9r_go_relaxed.owl ligand binding domain binding molecular_function owl:Class GO:1990044 biolink:NamedThing protein localization to lipid droplet A process in which a protein is transported to, or maintained in, a location on or within a lipid droplet. tmpzr1t_l9r_go_relaxed.owl protein localization to lipid body|protein localisation to adiposome|protein localisation to lipid particle|protein localization to adiposome|protein localization to lipid particle|protein localisation to lipid droplet|protein localisation to lipid body sart 2013-02-15T12:40:57Z biological_process owl:Class GO:0008212 biolink:NamedThing mineralocorticoid metabolic process The chemical reactions and pathways involving mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Mineralocorticoids act primarily on water and electrolyte balance. tmpzr1t_l9r_go_relaxed.owl mineralocorticoid metabolism biological_process owl:Class GO:0003917 biolink:NamedThing DNA topoisomerase type I (single strand cut, ATP-independent) activity Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. tmpzr1t_l9r_go_relaxed.owl untwisting enzyme activity|relaxing enzyme activity|type I DNA topoisomerase activity|type I topoisomerase activity|DNA topoisomerase I activity|deoxyribonucleate topoisomerase|topoisomerase|swivelase activity|omega-protein activity|nicking-closing enzyme activity MetaCyc:5.99.1.2-RXN|EC:5.6.2.1 Note that a further distinction, between type IA and type IB topoisomerases, is based on sequence or structural similarity between gene products that possess type I catalytic activity. molecular_function owl:Class GO:0102371 biolink:NamedThing betulin dehydrogenase activity Catalysis of the reaction: betulin + NADPH(4-) + H+ + O2 <=> betulinic aldehyde + NADP(3-) + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13498 molecular_function owl:Class GO:0007367 biolink:NamedThing segment polarity determination Division of the 14 parasegments of the embryo into anterior and posterior compartments; exemplified by the actions of the segment polarity gene products. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050226 biolink:NamedThing psychosine sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + galactosylsphingosine = adenosine 3',5'-bisphosphate + psychosine sulfate. tmpzr1t_l9r_go_relaxed.owl PAPS:psychosine sulphotransferase activity|3'-phosphoadenosine 5'-phosphosulfate-psychosine sulphotransferase activity|psychosine sulphotransferase activity|3'-phosphoadenylyl-sulfate:galactosylsphingosine sulfotransferase activity EC:2.8.2.13|RHEA:14137|MetaCyc:PSYCHOSINE-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:1902832 biolink:NamedThing negative regulation of cell proliferation in dorsal spinal cord Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation in dorsal spinal cord. tmpzr1t_l9r_go_relaxed.owl inhibition of cell proliferation in dorsal spinal cord|downregulation of cell proliferation in dorsal spinal cord|down-regulation of cell proliferation in dorsal spinal cord|down regulation of cell proliferation in dorsal spinal cord mr 2014-03-31T17:42:50Z biological_process owl:Class GO:0072719 biolink:NamedThing cellular response to cisplatin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cisplatin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-30T11:31:12Z biological_process owl:Class GO:0072718 biolink:NamedThing response to cisplatin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cisplatin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-30T11:31:05Z biological_process owl:Class GO:0071300 biolink:NamedThing cellular response to retinoic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to vitamin A acid mah 2009-12-10T04:30:34Z biological_process owl:Class GO:0036160 biolink:NamedThing melanocyte-stimulating hormone secretion The regulated release of a melanocyte-stimulating hormone, any of a group of peptide hormones that are produced by cells in the intermediate lobe of the pituitary gland, and stimulate the production of melanin to increase pigmentation. tmpzr1t_l9r_go_relaxed.owl MSH secretion bf 2012-03-26T01:16:55Z biological_process owl:Class GO:0008768 biolink:NamedThing UDP-sugar diphosphatase activity Catalysis of the reaction: UDP-sugar + H2O = UMP + sugar 1-phosphate. tmpzr1t_l9r_go_relaxed.owl nucleosidediphosphate-sugar pyrophosphatase activity|UDP-sugar pyrophosphatase activity|UDP-sugar hydrolase activity|UDP-sugar sugarphosphohydrolase activity|nucleosidediphosphate-sugar diphosphatase activity MetaCyc:UDPSUGARHYDRO-RXN|Reactome:R-HSA-6810464|EC:3.6.1.45 molecular_function owl:Class GO:0080051 biolink:NamedThing cutin transport The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Cutin, which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004482 biolink:NamedThing mRNA (guanine-N7-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + G(5')pppR-RNA = S-adenosyl-L-homocysteine + m7G(5')pppR-RNA. m7G(5')pppR-RNA is mRNA containing an N7-methylguanine cap; R may be guanosine or adenosine. tmpzr1t_l9r_go_relaxed.owl guanine-7-methyltransferase activity|S-adenosyl-L-methionine:mRNA (guanine-7-N-)-methyltransferase activity|messenger ribonucleate guanine 7-methyltransferase activity|S-adenosyl-L-methionine:mRNA (guanine-N7-)-methyltransferase activity|messenger RNA guanine 7-methyltransferase activity Reactome:R-HSA-9694476|EC:2.1.1.56|Reactome:R-HSA-9694492|Reactome:R-HSA-77090|MetaCyc:MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|Reactome:R-HSA-9684018|Reactome:R-HSA-9684017|Reactome:R-HSA-9694737|Reactome:R-HSA-9684016 molecular_function owl:Class GO:0071265 biolink:NamedThing L-methionine biosynthetic process The chemical reactions and pathways resulting in the formation of L-methionine, the L-enantiomer of (2S)-2-amino-4-(methylsulfanyl)butanoic acid. tmpzr1t_l9r_go_relaxed.owl L-methionine biosynthesis|L-methionine anabolism|L-methionine synthesis|L-methionine formation mah 2009-12-09T04:28:15Z biological_process owl:Class GO:0015792 biolink:NamedThing arabinitol transmembrane transport The process in which arabitol is transported across a lipid bilayer, from one side of a membrane to the other. Arabitol is the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. The D enantiomer is present in lichens and mushrooms. tmpzr1t_l9r_go_relaxed.owl arabitol transport|arabinitol transport biological_process owl:Class GO:0031921 biolink:NamedThing pyridoxal phosphate transport The directed movement of pyridoxal phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore; pyridoxal phosphate is pyridoxal phosphorylated at the hydroxymethyl group of C-5, and is the active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048792 biolink:NamedThing spontaneous exocytosis of neurotransmitter The release of a neurotransmitter into the synaptic cleft, where the release step is independent of the presence of calcium ions (Ca2+). The neurotransmitter is contained within a membrane-bounded vesicle, and is released by fusion of the vesicle with the presynaptic plasma membrane of a nerve cell. tmpzr1t_l9r_go_relaxed.owl spontaneous synaptic vesicle exocytosis biological_process owl:Class GO:1904870 biolink:NamedThing negative regulation of protein localization to Cajal body Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to Cajal body. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localization in Cajal body|downregulation of protein localization to Cajal body|negative regulation of protein localisation to Cajal body|down-regulation of protein localization to Cajal body|down-regulation of protein localisation to Cajal body|down-regulation of protein localisation in Cajal body|inhibition of protein localisation in Cajal body|negative regulation of protein localisation in Cajal body|downregulation of protein localisation in Cajal body|down regulation of protein localisation in Cajal body|inhibition of protein localization to Cajal body|down regulation of protein localization to Cajal body|down-regulation of protein localization in Cajal body|inhibition of protein localisation to Cajal body|down regulation of protein localisation to Cajal body|inhibition of protein localization in Cajal body|downregulation of protein localization in Cajal body|downregulation of protein localisation to Cajal body|negative regulation of protein localization in Cajal body nc 2015-12-18T11:17:38Z biological_process owl:Class GO:0005920 biolink:NamedThing smooth septate junction A septate junction that lacks the regular arrays of electron-dense septae found in pleated septate junctions. tmpzr1t_l9r_go_relaxed.owl zonula continua cellular_component owl:Class GO:0005918 biolink:NamedThing septate junction A cell-cell junction that forms a continuous band around each cell in an epithelium; within the septate junction the membranes of adjacent cells maintain a constant distance of approximately 15 nm; found in arthropods. tmpzr1t_l9r_go_relaxed.owl septate desmosome NIF_Subcellular:sao427941916 cellular_component owl:Class GO:0000704 biolink:NamedThing pyrimidine dimer DNA N-glycosylase activity Catalysis of the removal of pyrimidine dimers by removing the 5' pyrimidine of the dimer by cleaving the N-C1' glycosidic bond between the 5' pyrimidine of the dimer and the deoxyribose sugar. The reaction releases the 5' pyrimidine of the dimer and leaves an apurinic (AP) site. The reaction involves the formation of a covalent enzyme substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048360 biolink:NamedThing root cap mucilage metabolic process The chemical reactions and pathways involving mucilage that occur in the root cap; mucilage is normally synthesized during root growth. tmpzr1t_l9r_go_relaxed.owl root cap mucilage metabolism biological_process owl:Class GO:0070483 biolink:NamedThing detection of hypoxia The series of events in which a stimulus indicating lowered oxygen tension is received by a cell and converted into a molecular signal. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. tmpzr1t_l9r_go_relaxed.owl detection of reduced oxygen levels biological_process owl:Class GO:0008316 biolink:NamedThing structural constituent of vitelline membrane The action of a molecule that contributes to the structural integrity of the vitelline membrane of an egg. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030302 biolink:NamedThing deoxynucleotide transport The directed movement of a deoxynucleotide, a deoxyribonucleoside in ester linkage to phosphate, commonly at the 5' position of deoxyribose, into, out of or within a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061995 biolink:NamedThing ATP-dependent protein-DNA complex displacement activity An activity that displaces proteins or protein complexes from DNA, sometimes in a 'wire stripping' fashion, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent protein-nucleic acid complex displacement activity https://github.com/geneontology/go-ontology/issues/21612 dph 2018-02-16T15:46:47Z GO:0061994 molecular_function owl:Class GO:0008737 biolink:NamedThing L-fuculokinase activity Catalysis of the reaction: L-fuculose + ATP = L-fuculose 1-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:L-fuculose 1-phosphotransferase activity|L-fuculokinase (phosphorylating)|L-fuculose kinase activity MetaCyc:FUCULOKIN-RXN|RHEA:12376|EC:2.7.1.51|KEGG_REACTION:R03241 molecular_function owl:Class GO:0048174 biolink:NamedThing negative regulation of short-term neuronal synaptic plasticity A process that decreases short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity. tmpzr1t_l9r_go_relaxed.owl down regulation of short-term neuronal synaptic plasticity|down-regulation of short-term neuronal synaptic plasticity|inhibition of short-term neuronal synaptic plasticity|downregulation of short-term neuronal synaptic plasticity Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:1905378 biolink:NamedThing cellular response to D-galactose Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a D-galactose stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to D-Gal|cellular response to D-galacto-hexose sl 2016-08-17T22:17:32Z biological_process owl:Class GO:1901952 biolink:NamedThing negative regulation of anterograde dense core granule transport Any process that stops, prevents or reduces the frequency, rate or extent of anterograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl inhibition of anterograde dense core granule transport|downregulation of anterograde dense core granule transport|down-regulation of anterograde dense core granule transport|down regulation of anterograde dense core granule transport pr 2013-02-19T13:36:30Z biological_process owl:Class GO:1901951 biolink:NamedThing regulation of anterograde dense core granule transport Any process that modulates the frequency, rate or extent of anterograde dense core granule transport. tmpzr1t_l9r_go_relaxed.owl pr 2013-02-19T13:36:21Z biological_process owl:Class GO:0050087 biolink:NamedThing mannitol dehydrogenase (cytochrome) activity Catalysis of the reaction: 2 [Fe(III)cytochrome c] + D-mannitol = 2 [Fe(II)cytochrome c] + D-fructose + 2 H+. tmpzr1t_l9r_go_relaxed.owl polyol dehydrogenase activity|D-mannitol:ferricytochrome-c 2-oxidoreductase activity MetaCyc:MANNITOL-DEHYDROGENASE-CYTOCHROME-RXN|RHEA:17597|EC:1.1.2.2 molecular_function owl:Class GO:0031972 biolink:NamedThing chloroplast intermembrane space The region between the inner and outer lipid bilayers of a chloroplast envelope. tmpzr1t_l9r_go_relaxed.owl chloroplast envelope lumen cellular_component owl:Class GO:1902789 biolink:NamedThing cellular response to isooctane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isooctane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T20:52:58Z biological_process owl:Class GO:1902788 biolink:NamedThing response to isooctane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isooctane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T20:52:51Z biological_process owl:Class GO:0002586 biolink:NamedThing regulation of antigen processing and presentation of peptide antigen via MHC class II Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class II. tmpzr1t_l9r_go_relaxed.owl regulation of peptide antigen processing and presentation via MHC class II biological_process owl:Class GO:0003116 biolink:NamedThing regulation of vasoconstriction by norepinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of secretion of norepinephrine into the bloodstream or released by nerve endings. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018784 biolink:NamedThing (S)-2-haloacid dehalogenase activity Catalysis of the reaction: (S)-2-haloacid + H2O = (R)-2-hydroxyacid + halide. tmpzr1t_l9r_go_relaxed.owl 2-haloacid dehalogenase activity|L-DEX activity|2-haloalkanoid acid halidohydrolase activity|halocarboxylic acid halidohydrolase activity|2-haloacid halidohydrolase activity|L-2-haloacid dehalogenase activity|DL-2-haloacid dehalogenase activity|2-halocarboxylic acid dehalogenase II activity|(S)-2-haloacid halidohydrolase activity|2-haloalkanoic acid dehalogenase activity EC:3.8.1.2|MetaCyc:2-HALOACID-DEHALOGENASE-RXN|UM-BBD_reactionID:r0090|RHEA:11192 molecular_function owl:Class GO:0036175 biolink:NamedThing ribonucleoside-diphosphate reductase activity, glutaredoxin disulfide as acceptor Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + glutaredoxin disulfide + H2O -> ribonucleoside diphosphate + glutaredoxin. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8866405|Reactome:R-HSA-111742 bf 2012-03-29T11:12:42Z molecular_function owl:Class GO:1901975 biolink:NamedThing glycerate transmembrane transport The process in which glycerate is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl ms 2013-03-05T16:48:50Z biological_process owl:Class GO:0070401 biolink:NamedThing NADP+ binding Binding to the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. tmpzr1t_l9r_go_relaxed.owl oxidized NADP binding|oxidized nicotinamide adenine dinucleotide phosphate binding|NADP (oxidized) binding|NADP binding molecular_function owl:Class GO:0006535 biolink:NamedThing cysteine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. tmpzr1t_l9r_go_relaxed.owl cysteine synthesis from serine|cysteine anabolism from serine|cysteine formation from serine MetaCyc:CYSTSYN-PWY biological_process owl:Class GO:0044567 biolink:NamedThing primary cell wall cellulose synthase complex A large, multimeric protein complex which catalyzes the biosynthesis of cellulose for the plant primary cell wall. In Arabidopsis, contains the essential component proteins CESA1 and -3, and a CESA6-related protein. tmpzr1t_l9r_go_relaxed.owl primary cell wall CESA complex|primary cell-wall cellulose synthase complex jl 2012-04-18T12:24:16Z cellular_component owl:Class GO:0010330 biolink:NamedThing cellulose synthase complex A large, multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the plant cell wall. tmpzr1t_l9r_go_relaxed.owl CESA complex cellular_component owl:Class GO:0008488 biolink:NamedThing gamma-glutamyl carboxylase activity Catalysis of the reaction: peptidyl-glutamate + reduced vitamin K + CO2 + O2 = peptidyl-gamma-carboxyglutamate + vitamin K epoxide. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-159819|Reactome:R-HSA-159752|Reactome:R-HSA-9673231|Reactome:R-HSA-159761|Reactome:R-HSA-159826|Reactome:R-HSA-159803|Reactome:R-HSA-163810|EC:4.1.1.90|Reactome:R-HSA-6807214|RHEA:45140|Reactome:R-HSA-163820|Reactome:R-HSA-159795 molecular_function owl:Class GO:0097354 biolink:NamedThing prenylation The covalent attachment of a prenyl group to a molecule; geranyl, farnesyl, or geranylgeranyl groups may be added. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-03T01:12:19Z biological_process owl:Class GO:0016207 biolink:NamedThing 4-coumarate-CoA ligase activity Catalysis of the reaction: ATP + 4-coumarate + CoA = AMP + diphosphate + 4-coumaroyl-CoA. tmpzr1t_l9r_go_relaxed.owl p-coumaryl-CoA synthetase activity|4-coumarate:coenzyme A ligase activity|4-coumarate-CoA synthetase activity|p-hydroxycinnamic acid:CoA ligase activity|4-coumaryl-CoA synthetase activity|4CL|p-hydroxycinnamoyl coenzyme A synthetase activity|sinapoyl coenzyme A synthetase activity|4-coumaroyl-CoA synthetase activity|p-coumaryl-CoA ligase activity|hydroxycinnamoyl CoA synthetase activity|feruloyl CoA ligase activity|feruloyl coenzyme A synthetase activity|4-coumarate:CoA ligase activity|4-coumaroyl-CoA synthase activity|caffeolyl coenzyme A synthetase activity|p-coumaryl coenzyme A synthetase activity|4-coumarate:CoA ligase (AMP-forming)|hydroxycinnamate:CoA ligase activity|p-coumaroyl CoA ligase activity KEGG_REACTION:R01616|RHEA:19641|EC:6.2.1.12|MetaCyc:4-COUMARATE--COA-LIGASE-RXN molecular_function owl:Class GO:0102890 biolink:NamedThing naringenin chalcone 4'-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 2',4,4',6'-tetrahydroxychalcone <=> UDP + 2',4,4',6'-tetrahydroxychalcone 4'-O-beta-D-glucoside + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.286|MetaCyc:RXN-8453|RHEA:34291 molecular_function owl:Class GO:0008953 biolink:NamedThing penicillin amidase activity Catalysis of the reaction: penicillin + H2O = a carboxylate + 6-aminopenicillanate. tmpzr1t_l9r_go_relaxed.owl palmitoleoyl [acyl-carrier protein]-dependent acyltransferase activity|benzylpenicillin acylase activity|semacylase activity|penicillin acylase activity|penicillin amidohydrolase activity|alpha-acylamino-beta-lactam acylhydrolase activity|novozym 217|ampicillin acylase activity RHEA:18693|MetaCyc:PENICILLIN-AMIDASE-RXN|EC:3.5.1.11 molecular_function owl:Class GO:1901006 biolink:NamedThing ubiquinone-6 biosynthetic process The chemical reactions and pathways resulting in the formation of ubiquinone-6. tmpzr1t_l9r_go_relaxed.owl ubiquinone-6 formation|ubiquinone-6 anabolism|ubiquinone-6 synthesis|ubiquinone-6 biosynthesis bf 2012-06-15T09:59:58Z biological_process owl:Class GO:0044354 biolink:NamedThing macropinosome A membrane-bounded, uncoated intracellular vesicle formed by the process of macropinocytosis. tmpzr1t_l9r_go_relaxed.owl jl 2011-08-11T10:51:42Z cellular_component owl:Class GO:0038131 biolink:NamedThing neuregulin receptor activity Combining with a neuregulin, a member of the EGF family of growth factors, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl NRG receptor activity|NRG1 receptor activity|NRG2 receptor activity Consider also annotating to 'ERBB3 signaling pathway ; GO:0038129' and/or 'ERBB4 signaling pathway ; GO:0038130'. bf 2012-03-30T10:47:11Z molecular_function owl:Class GO:1901450 biolink:NamedThing positive regulation of response to butan-1-ol Any process that activates or increases the frequency, rate or extent of response to butan-1-ol. tmpzr1t_l9r_go_relaxed.owl upregulation of response to butan-1-ol|up-regulation of response to butan-1-ol|up regulation of response to butan-1-ol|activation of response to butan-1-ol tt 2012-10-02T14:17:17Z biological_process owl:Class GO:0001550 biolink:NamedThing ovarian cumulus expansion Increase in size of the cumulus surrounding the oocyte including change in morphology due to proliferation and dispersion of cumulus cells. tmpzr1t_l9r_go_relaxed.owl ovarian cumulus growth biological_process owl:Class GO:0042272 biolink:NamedThing nuclear RNA export factor complex A protein complex that contains two proteins (know in several organisms, including Drosophila, as NXF1 and NXF2) and is required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm. tmpzr1t_l9r_go_relaxed.owl TAP-p15 complex|NXF1-NXT1 complex|Mex67-Mtr2 complex cellular_component owl:Class GO:0010997 biolink:NamedThing anaphase-promoting complex binding Binding to an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. tmpzr1t_l9r_go_relaxed.owl APC binding tb 2009-06-10T11:18:22Z molecular_function owl:Class GO:0098709 biolink:NamedThing glutathione import across plasma membrane The directed movement of glutathione from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl glutathione uptake|glutathione import into cell bf 2012-09-18T14:29:19Z GO:0036347 biological_process owl:Class GO:0000762 biolink:NamedThing pheromone-induced unidirectional conjugation The process of unidirectional (polarized) transfer of genetic information in response to a pheromone. It involves direct cellular contact between a donor and recipient cell; the contact is followed by the formation of a cellular bridge that physically connects the cells; some or all of the chromosome(s) of one cell ('male') is then transferred into the other cell ('female'); unidirectional conjugation occurs between cells of different mating types. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072016 biolink:NamedThing glomerular parietal epithelial cell development The process whose specific outcome is the progression of a glomerular parietal epithelial cell over time, from its formation to the mature structure. Glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. tmpzr1t_l9r_go_relaxed.owl Bowman's capsule development mah 2010-01-25T02:13:16Z biological_process owl:Class GO:0001048 biolink:NamedThing RNA polymerase IV core binding Binding to RNA polymerase IV core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in siRNA production. tmpzr1t_l9r_go_relaxed.owl krc 2010-09-23T01:41:03Z molecular_function owl:Class GO:0039668 biolink:NamedThing viral entry into host cell via pilus basal pore The uptake of a virus or viral genetic material into a host cell which occurs through retraction of the virion-bound pilus, followed by entry of the viral genome into the host cell through the pilus basal pore. Filamentous bacteriophages absorb to the tip of the F-pili and can enter the bacterial cell in this way. tmpzr1t_l9r_go_relaxed.owl filamentous viral entry into host cell via pilus retraction bf 2013-09-04T14:33:18Z biological_process owl:Class GO:0004799 biolink:NamedThing thymidylate synthase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate. tmpzr1t_l9r_go_relaxed.owl TMP synthetase activity|5,10-methylenetetrahydrofolate:dUMP C-methyltransferase activity|dTMP synthase activity|methylenetetrahydrofolate:dUMP C-methyltransferase activity|thymidylate synthetase activity EC:2.1.1.45|MetaCyc:THYMIDYLATESYN-RXN|Reactome:R-HSA-73605|RHEA:12104|KEGG_REACTION:R02101 molecular_function owl:Class GO:0052829 biolink:NamedThing inositol-1,3,4-trisphosphate 1-phosphatase activity Catalysis of the reaction: D-myo-inositol 1,3,4-trisphosphate + H2O = myo-inositol 3,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855232 ai 2011-11-29T09:58:00Z molecular_function owl:Class GO:0046081 biolink:NamedThing dUTP catabolic process The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl dUTP breakdown|dUTP degradation|dUTP catabolism biological_process owl:Class GO:0042543 biolink:NamedThing protein N-linked glycosylation via arginine The glycosylation of protein via peptidyl-arginine, omega-N-glycosyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked glycosylation via arginine RESID:AA0327 biological_process owl:Class GO:0047525 biolink:NamedThing 2'-hydroxydaidzein reductase activity Catalysis of the reaction: 2'-hydroxydihydrodaidzein + NADP+ = 2'-hydroxydaidzein + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl HDR activity|2'-hydroxydihydrodaidzein:NADP(+) 2'-oxidoreductase activity|NADPH:2'-hydroxydaidzein oxidoreductase activity|2'-hydroxydihydrodaidzein:NADP+ 2'-oxidoreductase activity|2'-hydroxy-2,3-dihydrodaidzein:NADP+ 2'-oxidoreductase activity RHEA:17145|EC:1.3.1.51|MetaCyc:RXN-4502 molecular_function owl:Class GO:1990655 biolink:NamedThing 4 iron, 3 sulfur cluster binding Binding to a 4 iron, 3 sulfur (4Fe-3S) cluster, an uncommon iron-sulfur cluster with unique properties found in oxygen-tolerant Ni-Fe hydrogenases of various bacteria. tmpzr1t_l9r_go_relaxed.owl 4Fe-3S cluster binding pr 2015-02-24T17:07:23Z molecular_function owl:Class GO:0060288 biolink:NamedThing formation of a compartment boundary Formation of a lineage restriction boundary within a developing tissue which does not correspond to some morphological barrier. tmpzr1t_l9r_go_relaxed.owl compartment boundary formation biological_process owl:Class GO:1904348 biolink:NamedThing negative regulation of small intestine smooth muscle contraction Any process that stops, prevents or reduces the frequency, rate or extent of small intestine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl inhibition of small intestine smooth muscle contraction|downregulation of small intestine smooth muscle contraction|down regulation of small intestine smooth muscle contraction|down-regulation of small intestine smooth muscle contraction sl 2015-06-11T21:37:40Z biological_process owl:Class GO:0036244 biolink:NamedThing cellular response to neutral pH Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a neutral pH (pH close to 7) stimulus. pH is a measure of the acidity or basicity of an aqueous solution. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-28T10:21:03Z biological_process owl:Class GO:0102887 biolink:NamedThing beta-sesquiphellandrene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> beta-sesquiphellandrene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8430|EC:4.2.3.123|RHEA:32699 molecular_function owl:Class GO:0140526 biolink:NamedThing double membrane vesicle viral factory assembly A process that results in the assembly of a cytoplasmic viral factory consisting of a double-membrane bound vesicle. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19943 pg 2020-09-29T08:26:51Z biological_process owl:Class GO:0016155 biolink:NamedThing formyltetrahydrofolate dehydrogenase activity Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O + NADP(+) = (6S)-5,6,7,8-tetrahydrofolate + CO(2) + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 10-formyltetrahydrofolate:NADP+ oxidoreductase activity|10-formyl-H2PtGlu:NADP oxidoreductase activity|10-formyltetrahydrofolate dehydrogenase activity|N10-formyltetrahydrofolate dehydrogenase activity|10-formyl tetrahydrofolate:NADP oxidoreductase activity|10-formyl-H4folate dehydrogenase activity MetaCyc:FORMYLTETRAHYDROFOLATE-DEHYDROGENASE-RXN|EC:1.5.1.6|RHEA:10180|KEGG_REACTION:R00941 molecular_function owl:Class GO:0004190 biolink:NamedThing aspartic-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl carboxyl protease activity|aspartate protease activity|aspartic protease activity|aspartic endopeptidase activity|aspartyl protease activity Reactome:R-HSA-2022403|Reactome:R-HSA-157640|Reactome:R-HSA-2220988|Reactome:R-HSA-2065357|Reactome:R-HSA-9013361|Reactome:R-HSA-9604294|Reactome:R-HSA-2022412|Reactome:R-HSA-9017817|Reactome:R-HSA-157353|EC:3.4.23.-|Reactome:R-HSA-373705 molecular_function owl:Class GO:0002236 biolink:NamedThing detection of misfolded protein The series of events in which a misfolded protein stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055075 biolink:NamedThing potassium ion homeostasis Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018464 biolink:NamedThing 3-hydroxypimeloyl-CoA dehydrogenase activity Catalysis of the reaction: 3-hydroxypimelyl-CoA + NAD(+) = 3-oxopimelyl-CoA + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 3-hydroxypimeloyl-CoA:NAD+ oxidoreductase activity MetaCyc:1.1.1.259-RXN|KEGG_REACTION:R05305|UM-BBD_reactionID:r0196|RHEA:11168|EC:1.1.1.259 molecular_function owl:Class GO:1904758 biolink:NamedThing protein localization to new growing cell tip A process in which a protein is transported to, or maintained in, a location within a new growing cell tip. tmpzr1t_l9r_go_relaxed.owl protein localization in new growing cell tip|protein localisation in new growing cell tip|protein localization to post-new end take-off new cell tip|protein localisation to new growing cell tip|protein localization to new growing cell end|protein localization to new cell tip after activation of bipolar cell growth|protein localization to post-NETO new cell tip|protein localization to post-NETO new cell end mah 2015-10-21T12:37:48Z biological_process owl:Class GO:0042959 biolink:NamedThing alkanesulfonate transmembrane transporter activity Enables the directed movement of alkanesulfonate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl alkanesulphonate transporter activity|alkanesulfonate transporter activity molecular_function owl:Class GO:0090486 biolink:NamedThing small RNA 2'-O-methyltransferase Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a nucleoside residue in a small RNA molecule. Reaction: S-adenosyl-L-methionine + small RNA <=> S-adenosyl-L-homocysteine + small RNA containing a 3'-terminal 2'-O-methylnucleotide. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-15T16:32:49Z molecular_function owl:Class GO:2001149 biolink:NamedThing negative regulation of dipeptide transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of dipeptide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of dipeptide membrane transport kmv 2011-10-21T06:09:59Z biological_process owl:Class GO:0072476 biolink:NamedThing response to mitotic spindle checkpoint signaling A process that occurs in response to signals generated as a result of mitotic cell cycle spindle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to mitotic cell cycle spindle checkpoint signaling|response to signal involved in mitotic cell cycle spindle checkpoint|mitotic cell cycle spindle checkpoint effector process mah 2010-12-09T11:50:09Z biological_process owl:Class GO:0072417 biolink:NamedThing response to spindle checkpoint signaling A process that occurs in response to signals generated as a result of spindle checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl spindle checkpoint effector process|response to signal involved in spindle checkpoint mah 2010-12-08T03:56:04Z biological_process owl:Class GO:0031622 biolink:NamedThing positive regulation of fever generation Any process that activates or increases the frequency, rate, or extent of fever generation. tmpzr1t_l9r_go_relaxed.owl activation of fever|upregulation of fever|up-regulation of fever|stimulation of fever|up regulation of fever|positive regulation of pyrexia biological_process owl:Class GO:0061177 biolink:NamedThing type Is terminal bouton Terminal inflated portion of the axon of a glutamatergic neuron, containing the specialized apparatus necessary for the phasic release neurotransmitters that will induce the contraction of muscle. Type Is terminal boutons are smaller than type Ib terminal boutons. tmpzr1t_l9r_go_relaxed.owl type Is terminal button dph 2010-07-13T09:25:15Z cellular_component owl:Class GO:1902950 biolink:NamedThing regulation of dendritic spine maintenance Any process that modulates the frequency, rate or extent of dendritic spine maintenance. tmpzr1t_l9r_go_relaxed.owl sjp 2014-05-02T08:48:47Z biological_process owl:Class GO:0090455 biolink:NamedThing ornithine transmembrane import into vacuole The directed movement of ornithine into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl vacuolar ornithine import tb 2012-09-24T14:12:46Z biological_process owl:Class GO:2001159 biolink:NamedThing regulation of protein localization by the Cvt pathway Any process that modulates the frequency, rate or extent of protein localization by the Cvt pathway. tmpzr1t_l9r_go_relaxed.owl regulation of cytoplasm-to-vacuole targeting|regulation of cytoplasm to vacuole targeting jp 2011-10-25T10:22:24Z biological_process owl:Class GO:0005121 biolink:NamedThing Toll binding Binding to a Toll protein, a transmembrane receptor. tmpzr1t_l9r_go_relaxed.owl Toll ligand|Tl binding|Toll receptor binding molecular_function owl:Class GO:0039593 biolink:NamedThing suppression by virus of host exit from mitosis Any viral process which decreases the rate or extent of a host cell leaving M phase of the cell cycle. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl inhibition of host mitotic exit by virus VZ:877 bf 2012-06-25T02:21:20Z biological_process owl:Class GO:0000823 biolink:NamedThing inositol-1,4,5-trisphosphate 6-kinase activity Catalysis of the reaction: D-myo-inositol 1,4,5-trisphosphate + ATP = D-myo-inositol 1,4,5,6-tetrakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl inositol polyphosphate multikinase activity|IpmK|ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase activity|inositol trisphosphate 6-kinase activity MetaCyc:2.7.1.151-RXN|KEGG_REACTION:R05800|EC:2.7.1.151 molecular_function owl:Class GO:0051766 biolink:NamedThing inositol trisphosphate kinase activity Catalysis of the reaction: inositol trisphosphate + ATP = inositol tetrakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902040 biolink:NamedThing positive regulation of seed dormancy process Any process that activates or increases the frequency, rate or extent of seed dormancy process. tmpzr1t_l9r_go_relaxed.owl up-regulation of seed dormancy|activation of seed dormancy process|up-regulation of seed dormancy process|positive regulation of seed dormancy|upregulation of seed dormancy process|activation of seed dormancy|up regulation of seed dormancy process|up regulation of seed dormancy|upregulation of seed dormancy tb 2013-04-02T22:13:20Z biological_process owl:Class GO:1902517 biolink:NamedThing glycerol-3-phosphate-transporting ATPase complex A protein complex which is capable of glycerol-3-phosphate-transporting ATPase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is UgpB in E. coli in PMID:23013274. bhm 2013-11-27T16:53:33Z cellular_component owl:Class GO:0051753 biolink:NamedThing mannan synthase activity Catalysis of the reaction: mannan(n) + GDP-mannose = mannan(n+1) + GDP. This reaction is the formation of the beta-(1->4)-linked mannan backbone in substrates such as galactomannan. tmpzr1t_l9r_go_relaxed.owl mannan beta-1,4-mannosyltransferase activity|galactomannan beta-1,4-mannosyltransferase activity molecular_function owl:Class GO:0070965 biolink:NamedThing positive regulation of neutrophil mediated killing of fungus Any process that increases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl upregulation of neutrophil mediated killing of fungus|up-regulation of neutrophil mediated killing of fungus|up regulation of neutrophil mediated killing of fungus|activation of neutrophil mediated killing of fungus|stimulation of neutrophil mediated killing of fungus mah 2009-10-01T02:28:49Z biological_process owl:Class GO:1900667 biolink:NamedThing regulation of endocrocin biosynthetic process Any process that modulates the frequency, rate or extent of endocrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of endocrocin biosynthesis|regulation of endocrocin anabolism|regulation of endocrocin formation|regulation of endocrocin synthesis di 2012-05-22T04:16:04Z biological_process owl:Class GO:0102137 biolink:NamedThing 7-oxateasterone synthase activity Catalysis of the reaction: H+ + teasterone + NADPH + O2 <=> 7-oxateasterone + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11537 molecular_function owl:Class GO:0016688 biolink:NamedThing L-ascorbate peroxidase activity Catalysis of the reaction: L-ascorbate + hydrogen peroxide = dehydroascorbate + 2 H2O. tmpzr1t_l9r_go_relaxed.owl L-ascorbic acid peroxidase activity|L-ascorbate:hydrogen-peroxide oxidoreductase activity|L-ascorbic acid-specific peroxidase activity|ascorbic acid peroxidase activity|ascorbate peroxidase activity EC:1.11.1.11|MetaCyc:L-ASCORBATE-PEROXIDASE-RXN|RHEA:22996 molecular_function owl:Class GO:0031584 biolink:NamedThing activation of phospholipase D activity Any process that initiates the activity of inactive phospholipase D. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043506 biolink:NamedThing regulation of JUN kinase activity Any process that modulates the frequency, rate or extent of JUN kinase activity. tmpzr1t_l9r_go_relaxed.owl regulation of JUNK activity biological_process owl:Class GO:1904314 biolink:NamedThing cellular response to methamphetamine hydrochloride Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methamphetamine hydrochloride stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to methamphetamine HCL sl 2015-06-10T17:47:15Z biological_process owl:Class GO:0045459 biolink:NamedThing iron incorporation into iron-sulfur cluster via tetrakis-L-cysteinyl triiron tetrasulfide The incorporation of iron into a 3Fe-4S iron-sulfur cluster via tetrakis-L-cysteinyl triiron tetrasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulphur cluster via tetrakis-L-cysteinyl triiron tetrasulphide RESID:AA0326 biological_process owl:Class GO:0051462 biolink:NamedThing regulation of cortisol secretion Any process that modulates the frequency, rate or extent of the regulated release of cortisol from a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016180 biolink:NamedThing snRNA processing Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090396 biolink:NamedThing leaf papilla A plant cell papilla that is part of a leaf papilla cell. tmpzr1t_l9r_go_relaxed.owl Part of leaf papilla cell (PO:0025167). tb 2010-12-15T03:26:20Z cellular_component owl:Class GO:0044668 biolink:NamedThing sodium:malonate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sodium(out)+ malonate(out) = sodium(in) + malonate(in). tmpzr1t_l9r_go_relaxed.owl RHEA:33135 jl 2012-08-08T11:59:48Z molecular_function owl:Class GO:0042663 biolink:NamedThing regulation of endodermal cell fate specification Any process that mediates the specification of a cell into an endoderm cell. tmpzr1t_l9r_go_relaxed.owl regulation of endoderm cell fate specification biological_process owl:Class GO:0062181 biolink:NamedThing 1-alpha,25-dihydroxyvitamin D3 23-hydroxylase activity Catatlysis of the reaction: calcitriol + 2 H(+) + O2 + 2 reduced [adrenodoxin] = 1alpha,23S,25-trihydroxycholecalciferol + H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl RHEA:49192 dph 2019-11-26T17:16:39Z molecular_function owl:Class GO:0062179 biolink:NamedThing vitamin D 23-hydroxylase activity Catalysis of the hydroxylation of C-23 of any form of vitamin D. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-26T17:10:29Z molecular_function owl:Class GO:0042377 biolink:NamedThing vitamin K catabolic process The chemical reactions and pathways resulting in the breakdown of any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. tmpzr1t_l9r_go_relaxed.owl vitamin K breakdown|naphthoquinone catabolic process|naphthoquinone catabolism|vitamin K catabolism|vitamin K degradation biological_process owl:Class GO:0047682 biolink:NamedThing aryl-alcohol oxidase activity Catalysis of the reaction: an aromatic primary alcohol + O2 = an aromatic aldehyde + H2O2. tmpzr1t_l9r_go_relaxed.owl aryl alcohol oxidase activity|arom. alcohol oxidase activity|aryl-alcohol:oxygen oxidoreductase activity|veratryl alcohol oxidase activity MetaCyc:ARYL-ALCOHOL-OXIDASE-RXN|RHEA:17541|EC:1.1.3.7 molecular_function owl:Class GO:1904985 biolink:NamedThing negative regulation of quinolinate biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of quinolinate biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of quinolinate formation|downregulation of quinolinate synthesis|downregulation of quinolinate anabolism|down regulation of quinolinate biosynthetic process|inhibition of quinolinate biosynthetic process|negative regulation of quinolinate formation|downregulation of quinolinate biosynthesis|inhibition of quinolinate formation|inhibition of quinolinate anabolism|down regulation of quinolinate formation|down regulation of quinolinate synthesis|down regulation of quinolinate anabolism|negative regulation of quinolinate anabolism|down-regulation of quinolinate biosynthetic process|down-regulation of quinolinate anabolism|negative regulation of quinolinate biosynthesis|negative regulation of quinolinate synthesis|down regulation of quinolinate biosynthesis|down-regulation of quinolinate biosynthesis|down-regulation of quinolinate synthesis|inhibition of quinolinate synthesis|inhibition of quinolinate biosynthesis|downregulation of quinolinate biosynthetic process|downregulation of quinolinate formation bf 2016-02-29T15:54:21Z biological_process owl:Class GO:0071374 biolink:NamedThing cellular response to parathyroid hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:19:29Z biological_process owl:Class GO:0044388 biolink:NamedThing small protein activating enzyme binding Binding to a small protein activating enzyme, such as ubiquitin-activating enzyme. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-15T04:28:17Z molecular_function owl:Class GO:0032988 biolink:NamedThing ribonucleoprotein complex disassembly The disaggregation of a protein-RNA complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl RNP complex disassembly|RNA-protein complex disassembly|protein-RNA complex disassembly biological_process owl:Class GO:0003110 biolink:NamedThing positive regulation of the force of heart contraction by neuronal norepinephrine The process in which the release of norepinephrine from nerve endings modulates the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl increased force of heart contraction by neuronal norepinephrine|increased force of heart contraction by neuronal noradrenaline biological_process owl:Class GO:1903926 biolink:NamedThing cellular response to bisphenol A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bisphenol A stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T00:17:04Z biological_process owl:Class GO:1903925 biolink:NamedThing response to bisphenol A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bisphenol A stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T00:16:46Z biological_process owl:Class GO:0102658 biolink:NamedThing 2-oxo-5-methylthiopentanoate aminotransferase activity Catalysis of the reaction: 5-methylthio-2-oxopentanoate + a standard alpha amino acid <=> L-homomethionine + a 2-oxo carboxylate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2205 molecular_function owl:Class GO:0019375 biolink:NamedThing galactolipid biosynthetic process The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. tmpzr1t_l9r_go_relaxed.owl galactolipid anabolism|galactolipid biosynthesis|galactolipid synthesis|galactolipid formation biological_process owl:Class GO:0097488 biolink:NamedThing multivesicular body, internal vesicle membrane The lipid bilayer surrounding a multivesicular body internal vesicle. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-08T20:36:33Z cellular_component owl:Class GO:0018687 biolink:NamedThing biphenyl 2,3-dioxygenase activity Catalysis of the reaction: biphenyl + NADH + H+ + O2 = (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD+. This reaction requires Fe2+. tmpzr1t_l9r_go_relaxed.owl biphenyl dioxygenase activity|biphenyl,NADH:oxygen oxidoreductase (2,3-hydroxylating) RHEA:18165|EC:1.14.12.18|UM-BBD_enzymeID:e0089|MetaCyc:1.14.12.18-RXN molecular_function owl:Class GO:0032220 biolink:NamedThing plasma membrane fusion involved in cytogamy The joining of two or more lipid bilayer membranes that surround cells, that contributes to cytogamy. tmpzr1t_l9r_go_relaxed.owl plasma membrane fusion during cytogamy|plasma membrane organization involved in conjugation with cellular fusion https://github.com/geneontology/go-ontology/issues/16258 mah 2009-08-20T02:24:56Z GO:0070872 biological_process owl:Class GO:0036429 biolink:NamedThing adenosylcobinamide kinase (ATP-specific) activity Catalysis of the reaction: adenosylcobinamide + ATP = adenosylcobinamide phosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:15769|KEGG_REACTION:R05221|MetaCyc:COBINAMIDEKIN-RXN bf 2013-09-16T14:05:56Z molecular_function owl:Class GO:0043752 biolink:NamedThing adenosylcobinamide kinase activity Catalysis of the reaction: RTP + adenosylcobinamide = adenosylcobinamide phosphate + RDP (where RTP is either ATP or GTP). tmpzr1t_l9r_go_relaxed.owl adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase|RTP:adenosylcobinamide phosphotransferase activity|CobU|AdoCbi kinase/AdoCbi-phosphate guanylyltransferase MetaCyc:2.7.1.156-RXN|EC:2.7.1.156 molecular_function owl:Class GO:0034153 biolink:NamedThing positive regulation of toll-like receptor 6 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 6 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 6 signalling pathway|positive regulation of TLR6 signaling pathway biological_process owl:Class GO:1905905 biolink:NamedThing pharyngeal gland morphogenesis The developmental process by which a pharyngeal gland is generated and organized. tmpzr1t_l9r_go_relaxed.owl pharynx gland morphogenesis|glandulae pharyngeae morphogenesis rz 2017-02-03T14:39:10Z biological_process owl:Class GO:0008879 biolink:NamedThing glucose-1-phosphate thymidylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose. tmpzr1t_l9r_go_relaxed.owl dTDP-glucose pyrophosphorylase activity|TDP-glucose pyrophosphorylase activity|thymidine diphosphoglucose pyrophosphorylase activity|dTDP-glucose diphosphorylase activity|dTDP-glucose synthase activity|dTTP:alpha-D-glucose-1-phosphate thymidylyltransferase activity|glucose 1-phosphate thymidylyltransferase activity|thymidine diphosphate glucose pyrophosphorylase activity EC:2.7.7.24|RHEA:15225|KEGG_REACTION:R02328|MetaCyc:DTDPGLUCOSEPP-RXN molecular_function owl:Class GO:0035704 biolink:NamedThing helper T cell chemotaxis The directed movement of a helper T cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl T-helper cell chemotaxis bf 2011-03-02T02:31:48Z biological_process owl:Class GO:2001106 biolink:NamedThing regulation of Rho guanyl-nucleotide exchange factor activity Any process that modulates the frequency, rate or extent of Rho guanyl-nucleotide exchange factor activity. tmpzr1t_l9r_go_relaxed.owl regulation of RhoGEF|regulation of Rho guanine nucleotide exchange factor yaf 2011-09-23T10:13:06Z biological_process owl:Class GO:0061480 biolink:NamedThing response to asparaginase Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an asparaginase stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:13:08Z biological_process owl:Class GO:0045249 biolink:NamedThing cytosol pyruvate dehydrogenase (lipoamide) phosphatase complex A cytosolic complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'cytosolic pyruvate dehydrogenase complex ; GO:0045250'. cellular_component owl:Class GO:0061672 biolink:NamedThing glutathione hydrolase complex Enzyme complex that in S. cerevisiae has components Dug2/Dug3 and is able to catalyze the cleavage of glutathione into glutamate and Cys-Gly. tmpzr1t_l9r_go_relaxed.owl glutamine amidotransferase II complex|gamma-glutamyltranspeptidase complex|glutathionase complex dph 2014-11-24T14:38:08Z cellular_component owl:Class GO:0050580 biolink:NamedThing 2,5-didehydrogluconate reductase activity Catalysis of the reaction: 2-dehydro-D-gluconate + NADP+ = 2,5-didehydro-D-gluconate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 2,5-diketo-D-gluconate reductase activity|2-dehydro-D-gluconate:NADP+ 2-oxidoreductase activity|YqhE reductase RHEA:23828|MetaCyc:1.1.1.274-RXN|EC:1.1.1.274 molecular_function owl:Class GO:0032485 biolink:NamedThing regulation of Ral protein signal transduction Any process that modulates the frequency, rate or extent of Ral protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150090 biolink:NamedThing multiple spine synapse organization, single dendrite A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse between a multiple synapse bouton and a single dendrite. tmpzr1t_l9r_go_relaxed.owl bc 2018-08-08T14:59:49Z biological_process owl:Class GO:0150089 biolink:NamedThing multiple spine synapse organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse between a multiple synapse bouton and one or more dendritic spines. tmpzr1t_l9r_go_relaxed.owl multisynapse organization|multiple spine synapse organisation|multisynapse organisation|multisynaptic organization|multi-synaptic organisation|multi-synapse organization|multisynaptic organisation|multi-synaptic organization|multi-synapse organisation bc 2018-08-08T14:54:50Z biological_process owl:Class GO:0140141 biolink:NamedThing mitochondrial potassium ion transmembrane transport The process in which a potassium ion is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl pg 2017-11-24T13:26:42Z biological_process owl:Class GO:0071942 biolink:NamedThing XPC complex A nucleotide-excision repair complex that is involved in damage sensing during global genome nucleotide excision repair (GG-NER). It is part of the pre-incision (or initial recognition) complex bound to sites of DNA damage. In human, it is composed of XPC, RAD23B and CETN2. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-01T11:09:36Z cellular_component owl:Class GO:0098853 biolink:NamedThing endoplasmic reticulum-vacuole membrane contact site A zone of apposition between endoplasmic-reticulum and lytic vacuole membranes, structured by bridging complexes. tmpzr1t_l9r_go_relaxed.owl ER-vacuole membrane contact site cellular_component owl:Class GO:0003991 biolink:NamedThing acetylglutamate kinase activity Catalysis of the reaction: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate-5-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetylglutamate kinase activity|N-acetylglutamic 5-phosphotransferase activity|ATP:N-acetyl-L-glutamate 5-phosphotransferase activity|acetylglutamate phosphokinase activity|N-acetylglutamate 5-phosphotransferase activity|N-acetylglutamate phosphokinase activity MetaCyc:ACETYLGLUTKIN-RXN|EC:2.7.2.8|RHEA:14629 molecular_function owl:Class GO:0045152 biolink:NamedThing antisigma factor binding Binding to an antisigma factor, a factor which inhibits the ability of the sigma factor to function as a transcriptional initiator. tmpzr1t_l9r_go_relaxed.owl antisigma factor antagonist activity molecular_function owl:Class GO:0050411 biolink:NamedThing agaritine gamma-glutamyltransferase activity Catalysis of the reaction: agaritine + acceptor-NH2 = 4-hydroxymethylphenylhydrazine + gamma-L-glutamyl-acceptor. tmpzr1t_l9r_go_relaxed.owl (gamma-L-glutamyl)-N1-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity|(gamma-L-glutamyl)-1-N-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity|agaritine g-glutamyltransferase activity MetaCyc:AGARITINE-GAMMA-GLUTAMYLTRANSFERASE-RXN|EC:2.3.2.9 molecular_function owl:Class GO:0002861 biolink:NamedThing regulation of inflammatory response to antigenic stimulus Any process that modulates the frequency, rate, or extent of an inflammatory response to an antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071260 biolink:NamedThing cellular response to mechanical stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus. tmpzr1t_l9r_go_relaxed.owl cellular mechanical stimulus response mah 2009-12-04T03:55:44Z biological_process owl:Class GO:0019013 biolink:NamedThing viral nucleocapsid The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. tmpzr1t_l9r_go_relaxed.owl nucleocapsid|core GO:0019014 cellular_component owl:Class GO:0043909 biolink:NamedThing N-acetylcitrulline deacetylase activity Catalysis of the reaction: N-acetyl-L-citrulline + H2O = citrulline + acetate. tmpzr1t_l9r_go_relaxed.owl N-acetyl-L-citrulline deacetylase activity|acetylcitrulline deacetylase activity RHEA:61092 molecular_function owl:Class GO:0033812 biolink:NamedThing 3-oxoadipyl-CoA thiolase activity Catalysis of the reaction: succinyl-CoA + acetyl-CoA = CoA + 3-oxoadipyl-CoA. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA:acetyl-CoA C-succinyltransferase activity MetaCyc:RXN-3641|EC:2.3.1.174|RHEA:19481 molecular_function owl:Class GO:1900996 biolink:NamedThing benzene catabolic process The chemical reactions and pathways resulting in the breakdown of benzene. tmpzr1t_l9r_go_relaxed.owl benzene degradation|benzene catabolism|benzene breakdown yaf 2012-06-14T02:53:38Z biological_process owl:Class GO:0004358 biolink:NamedThing glutamate N-acetyltransferase activity Catalysis of the reaction: N(2)-acetyl-L-ornithine + L-glutamate = N-acetyl-L-glutamate + L-ornithine. tmpzr1t_l9r_go_relaxed.owl N-acetylglutamate synthase activity|acetylglutamic-acetylornithine transacetylase activity|acetylornithine glutamate acetyltransferase activity|N2-acetyl-L-ornithine:L-glutamate N-acetyltransferase activity|alpha-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase activity|acetylornithinase activity|2-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase activity|ornithine transacetylase activity|ornithine acetyltransferase activity|N-acetylglutamate synthetase activity|acetylglutamate synthetase activity|acetylglutamic synthetase activity|acetylglutamate-acetylornithine transacetylase activity|N-acetyl-L-glutamate synthetase activity|glutamate acetyltransferase activity KEGG_REACTION:R02282|RHEA:15349|EC:2.3.1.35|MetaCyc:GLUTAMATE-N-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0033740 biolink:NamedThing hydroxylamine oxidoreductase activity Catalysis of the reactions: hydroxylamine + NH3 = hydrazine + H2O, and hydrazine + acceptor = N2 + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl hydroxylamine:acceptor oxidoreductase activity RHEA:23232|EC:1.7.2.8|MetaCyc:1.7.99.8-RXN molecular_function owl:Class GO:0090617 biolink:NamedThing mitochondrial mRNA 5'-end processing Any process involved in forming the mature 5' end of an mRNA molecule that derives from the mitochondrial genome. tmpzr1t_l9r_go_relaxed.owl tb 2014-10-24T12:45:08Z biological_process owl:Class GO:1990190 biolink:NamedThing peptide-glutamate-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + N-terminal L-glutamate in peptide = CoA + N-acetyl-L-glutamate-peptide. tmpzr1t_l9r_go_relaxed.owl tb 2013-09-11T20:21:25Z molecular_function owl:Class GO:0052496 biolink:NamedThing occlusion by host of symbiont xylem The process in which an organism reduces the flow of fluid within the symbiont xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052494 biolink:NamedThing occlusion by host of symbiont vascular system The process in which an organism reduces the flow of fluid within its symbiont's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097498 biolink:NamedThing endothelial tube lumen extension Any endothelial tube morphogenesis process by which the tube is increased in length. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-12T13:49:54Z biological_process owl:Class GO:0018166 biolink:NamedThing C-terminal protein-tyrosinylation The ATP-dependent addition of a tyrosine residue to the C-terminus of a protein; typically the addition of tyrosine to the C-terminus of detyrosinated alpha-tubulin by the enzyme tubulin-tyrosine ligase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0257 See also the molecular function term 'tubulin-tyrosine ligase activity ; GO:0004835'. biological_process owl:Class GO:0051120 biolink:NamedThing hepoxilin A3 synthase activity Catalysis of the reaction: 12S-5Z,8Z,10E,14Z-12-hydro(pero)xy-eicosa-5,8,10,14-tetraenoic acid = (5Z,9E,14Z)-(8,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate. 12S-5Z,8Z,10E,14Z-12-hydro(pero)xy-eicosa-5,8,10,14-tetraenoic acid is also known as 12S-HpETE, and (5Z,9E,14Z)-(8,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate as hepoxilin A3. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8942208|Reactome:R-HSA-2161794 molecular_function owl:Class GO:0103002 biolink:NamedThing 16-hydroxypalmitate dehydrogenase activity Catalysis of the reaction: 16-hydroxypalmitate + NADP <=> H+ + 16-oxo-palmitate + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9802 molecular_function owl:Class GO:0043638 biolink:NamedThing puromycin biosynthetic process The chemical reactions and pathways resulting in the formation of puromycin, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061011 biolink:NamedThing hepatic duct development The progression of the hepatic duct over time, from its formation to the mature structure. The hepatic duct is the duct that leads from the liver to the common bile duct. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-22T09:44:39Z biological_process owl:Class GO:0061009 biolink:NamedThing common bile duct development The progression of the common bile duct over time, from its formation to the mature structure. The common bile duct is formed from the joining of the common hepatic duct running from the liver, and the cystic duct running from the gall bladder. The common bile duct transports bile from the liver and gall bladder to the intestine. tmpzr1t_l9r_go_relaxed.owl bile duct development|CBD development|EHBD development|extrahepatic bile duct development dph 2010-01-22T09:17:13Z biological_process owl:Class GO:0010099 biolink:NamedThing regulation of photomorphogenesis Any process that modulates the rate or extent of photomorphogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036227 biolink:NamedThing mitotic G2 cell cycle arrest in response to glucose starvation The process in which the mitotic cell cycle is halted during G2 phase as a result of deprivation of glucose. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-09T02:45:49Z biological_process owl:Class GO:0004014 biolink:NamedThing adenosylmethionine decarboxylase activity Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine carboxy-lyase [(5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium-salt-forming]|S-adenosyl-L-methionine decarboxylase activity|S-adenosyl-L-methionine carboxy-lyase activity|S-adenosylmethionine decarboxylase activity|adenosyl methionine decarboxylase activity RHEA:15981|Reactome:R-HSA-351222|MetaCyc:SAMDECARB-RXN|EC:4.1.1.50|KEGG_REACTION:R00178 molecular_function owl:Class GO:1902804 biolink:NamedThing negative regulation of synaptic vesicle transport Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle transport. tmpzr1t_l9r_go_relaxed.owl down regulation of synaptic vesicle transport|down-regulation of synaptic vesicle fusion|downregulation of synaptic vesicle transport|down-regulation of synaptic vesicle transport|down regulation of synaptic vesicle fission|down-regulation of synaptic vesicle fission|down regulation of synaptic vesicle fusion|negative regulation of synaptic vesicle fission|negative regulation of synaptic vesicle fusion|downregulation of synaptic vesicle fusion|inhibition of synaptic vesicle transport|downregulation of synaptic vesicle fission|inhibition of synaptic vesicle fission|inhibition of synaptic vesicle fusion kmv 2014-03-25T14:56:40Z biological_process owl:Class GO:0140596 biolink:NamedThing TOM complex A large mitochondrial outer membrane translocase complex that mediates transport of proteins into mitochondrial compartments. TOM transports beta-barrel precursors across the outer membrane and the sorting and assembly machinery (SAM complex) inserts them into the target membrane. tmpzr1t_l9r_go_relaxed.owl translocase of the outer mitochondrial membrane https://github.com/geneontology/go-ontology/issues/20669 pg 2021-02-09T19:43:51Z cellular_component owl:Class GO:0005742 biolink:NamedThing mitochondrial outer membrane translocase complex A large complex of the mitochondrial outer membrane that mediates transport of proteins into all mitochondrial compartments. tmpzr1t_l9r_go_relaxed.owl GIP complex|mitochondrion outer membrane translocase complex cellular_component owl:Class GO:0006588 biolink:NamedThing activation of tryptophan 5-monooxygenase activity The process in which the tryptophan 5-monooxygenase enzyme is changed so that it can carry out its enzymatic activity. tmpzr1t_l9r_go_relaxed.owl tryptophan hydroxylase activation biological_process owl:Class GO:0008310 biolink:NamedThing single-stranded DNA 3'-5' exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a single-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl single-stranded DNA specific 3'-5' exodeoxyribonuclease activity|ssDNA-specific 3'-5' exodeoxyribonuclease activity molecular_function owl:Class GO:0008296 biolink:NamedThing 3'-5'-exodeoxyribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a DNA molecule. tmpzr1t_l9r_go_relaxed.owl 3'-5' exodeoxyribonuclease activity Reactome:R-HSA-9023943 molecular_function owl:Class GO:0098733 biolink:NamedThing hemidesmosome associated protein complex Any protein complex that is part of or has some part in a hemidesmosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102597 biolink:NamedThing 3alpha-hydroxy-ent-sandaracopimardiene 9-beta-monooxygenase activity Catalysis of the reaction: ent-sandaracopimaradien-3-beta-ol + NADPH + H+ + O2 <=> oryzalexin E + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:41468|EC:1.14.14.122|MetaCyc:RXN-15381 molecular_function owl:Class GO:0061238 biolink:NamedThing establishment of planar polarity involved in mesonephric nephron morphogenesis Coordinated organization of groups of cells in the plane of an epithelium that contributes to the shaping of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl establishment of planar cell polarity involved in mesonephric nephron morphogenesis dph 2010-08-19T03:04:40Z biological_process owl:Class GO:0050584 biolink:NamedThing linoleate 11-lipoxygenase activity Catalysis of the reaction: linoleate + O(2) = (9Z,11S,12Z)-11-hydroperoxyoctadeca-9,12-dienoate. tmpzr1t_l9r_go_relaxed.owl manganese lipoxygenase activity|linoleate:oxygen 11S-oxidoreductase activity|linoleate dioxygenase activity KEGG_REACTION:R05718|EC:1.13.11.45|RHEA:18993|MetaCyc:1.13.11.45-RXN molecular_function owl:Class GO:2001080 biolink:NamedThing chitosan binding Binding to chitosan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:17:32Z molecular_function owl:Class GO:0016905 biolink:NamedThing myosin heavy chain kinase activity Catalysis of the reaction: ATP + myosin-heavy-chain = ADP + myosin-heavy-chain phosphate. tmpzr1t_l9r_go_relaxed.owl calmodulin-dependent myosin heavy chain kinase activity|myosin heavy-chain kinase activity|myosin-heavy-chain kinase activity|myosin heavy chain kinase A activity|STK6|ATP:myosin-heavy-chain O-phosphotransferase activity|myosin II heavy-chain kinase activity|MIHC kinase activity|ATP:myosin heavy-chain O-phosphotransferase activity|myosin I heavy-chain kinase activity|MHCK|myosin I heavy chain kinase activity|myosin II heavy chain kinase activity EC:2.7.11.7|RHEA:11424 molecular_function owl:Class GO:0006702 biolink:NamedThing androgen biosynthetic process The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics. tmpzr1t_l9r_go_relaxed.owl androgen formation|androgen biosynthesis|androgen synthesis|androgen anabolism biological_process owl:Class GO:0031144 biolink:NamedThing proteasome localization Any process in which the proteasome is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of proteasome localization|proteasome localisation biological_process owl:Class GO:0018626 biolink:NamedThing 2-chlorobenzoate 1,2-dioxygenase activity Catalysis of the reaction: 2-chlorobenzoate + NADH + H+ + O2 = catechol + chloride + NAD+ + CO2. tmpzr1t_l9r_go_relaxed.owl 2-chlorobenzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating, dechlorinating, decarboxylating)|2-halobenzoate 1,2-dioxygenase activity MetaCyc:2-CHLOROBENZOATE-12-DIOXYGENASE-RXN|EC:1.14.12.13|RHEA:21652|UM-BBD_reactionID:r0632 molecular_function owl:Class GO:0047729 biolink:NamedThing carnitine decarboxylase activity Catalysis of the reaction: carnitine + H(+) = 2-methylcholine + CO(2). tmpzr1t_l9r_go_relaxed.owl carnitine carboxy-lyase (2-methylcholine-forming)|carnitine carboxy-lyase activity KEGG_REACTION:R02398|EC:4.1.1.42|RHEA:21576|MetaCyc:CARNITINE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0052895 biolink:NamedThing N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity Catalysis of the reaction: N1-acetylspermine + oxygen + H2O = N1-acetylspermidine + 3-aminopropanal + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl N1-acetylspermine oxidase activity MetaCyc:POLYAMINE-OXIDASE-RXN|EC:1.5.3.16 molecular_function owl:Class GO:1904172 biolink:NamedThing positive regulation of bleb assembly Any process that activates or increases the frequency, rate or extent of bleb assembly. tmpzr1t_l9r_go_relaxed.owl activation of cell blebbing|up-regulation of cell blebbing|activation of bleb assembly|upregulation of cell blebbing|positive regulation of cell blebbing|upregulation of bleb assembly|up-regulation of bleb assembly|up regulation of cell blebbing|up regulation of bleb assembly als 2015-04-23T09:32:31Z biological_process owl:Class GO:1901593 biolink:NamedThing response to GW 7647 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a GW 7647 stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T17:16:48Z biological_process owl:Class GO:1905705 biolink:NamedThing cellular response to paclitaxel Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paclitaxel stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-11-16T21:40:32Z biological_process owl:Class GO:1901555 biolink:NamedThing response to paclitaxel Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paclitaxel stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2012-11-02T09:46:08Z biological_process owl:Class GO:0042797 biolink:NamedThing tRNA transcription by RNA polymerase III The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter. tmpzr1t_l9r_go_relaxed.owl tRNA transcription from Pol III promoter|tRNA transcription from RNA polymerase III promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0140627 biolink:NamedThing ubiquitin-dependent protein catabolic process via the C-end degron rule pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the DesCEND (destruction via C-end degron) pathway. In the DesCEND pathway, C-terminal residues (C-end degrons) in substrates are recognized by Cul2-RING and Cul4-RING E3 ligases, whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation. C-end degrons can be present in full-length proteins, truncated proteins or proteolytically cleaved forms. tmpzr1t_l9r_go_relaxed.owl DesCEND https://github.com/geneontology/go-ontology/issues/21184 pg 2021-03-24T07:30:47Z biological_process owl:Class GO:0032773 biolink:NamedThing positive regulation of tyrosinase activity Any process that activates or increases the activity of a tyrosinase enzyme monophenol oxygenase. tmpzr1t_l9r_go_relaxed.owl positive regulation of monophenol monooxygenase activity|activation of monophenol oxygenase activity|positive regulation of monophenol oxygenase activity|up-regulation of monophenol oxygenase activity|up regulation of monophenol oxygenase activity|upregulation of monophenol oxygenase activity|stimulation of monophenol oxygenase activity https://github.com/geneontology/go-ontology/issues/21024 biological_process owl:Class GO:0070054 biolink:NamedThing mRNA splicing, via endonucleolytic cleavage and ligation Splicing of mRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. tmpzr1t_l9r_go_relaxed.owl cytosolic mRNA splicing Note that while typically associated with tRNA splicing, splicing via endonucleolytic cleavages and subsequent ligation of the free exon ends is known to be used for some non-tRNA substrates, e.g. HAC1 (YFL031W) in S. cerevisiae and an intron in the 23S rRNA of the Archaeal species Desulfurococcus mobilis. GO:0061012 biological_process owl:Class GO:0007232 biolink:NamedThing osmosensory signaling pathway via Sho1 osmosensor A series of molecular signals generated in response to osmotic change, as mediated through a Sho1 osmosensor system. tmpzr1t_l9r_go_relaxed.owl signal transduction during osmotic stress via Sho1 osmosensor|osmosensory signalling pathway via Sho1 osmosensor biological_process owl:Class GO:0007231 biolink:NamedThing osmosensory signaling pathway The series of molecular signals initiated in response to osmotic change. tmpzr1t_l9r_go_relaxed.owl osmosensory signalling pathway|osmolarity sensing signalling pathway|osmolarity sensing|signal transduction during osmotic stress|osmosensory signal transduction|osmolarity sensing signaling pathway https://github.com/geneontology/go-ontology/issues/20368 biological_process owl:Class GO:0042902 biolink:NamedThing peptidoglycan-protein cross-linking via L-threonyl-pentaglycyl-murein The process of linking a protein to peptidoglycan via a carboxy terminal threonine carboxyl group through a pentaglycyl peptide to the lysine or diaminopimelic acid of the peptidoglycan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0345 biological_process owl:Class GO:0047725 biolink:NamedThing inulosucrase activity Catalysis of the reaction: sucrose + 2,1-beta-D-fructosyl(n) = glucose + 2,1-beta-D-fructosyl(n+1). tmpzr1t_l9r_go_relaxed.owl sucrose 1-fructosyl transferase activity|sucrose 1-fructosyltransferase activity|sucrose:2,1-beta-D-fructan 1-beta-D-fructosyltransferase activity RHEA:15745|EC:2.4.1.9|MetaCyc:INULOSUCRASE-RXN molecular_function owl:Class GO:0007376 biolink:NamedThing cephalic furrow formation Formation of a partial necklace of inturning tissue on the lateral sides of the embryo, along the dorsal-ventral axis. This furrow demarcates head from thorax in the developing protostome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902192 biolink:NamedThing 2-methylbut-2-enoyl-CoA(4-) metabolic process The chemical reactions and pathways involving 2-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbut-2-enoyl-CoA(4-) metabolism ms 2013-06-06T09:40:30Z biological_process owl:Class GO:0047428 biolink:NamedThing arylacetonitrilase activity Catalysis of the reaction: 2 H2O + 4-chlorophenylacetonitrile = 4-chlorophenylacetate + NH3. tmpzr1t_l9r_go_relaxed.owl arylacetonitrile aminohydrolase activity RHEA:20657|EC:3.5.5.5|MetaCyc:3.5.5.5-RXN molecular_function owl:Class GO:0005168 biolink:NamedThing neurotrophin TRKA receptor binding Binding to a neurotrophin TRKA receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKA receptor ligand molecular_function owl:Class GO:1902111 biolink:NamedThing response to diethyl maleate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diethyl maleate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2013-05-08T16:00:35Z biological_process owl:Class GO:0097228 biolink:NamedThing sperm principal piece The segment of the sperm flagellum where the mitochondrial sheath ends, and the outer dense fibers (ODFs) associated with outer axonemal doublets 3 and 8 are replaced by the 2 longitudinal columns of the fibrous sheath (FS) which run the length of the principal piece and are stabilized by circumferential ribs. The principal piece makes up ~2/3 of the length of the sperm flagellum and is defined by the presence of the FS and of only 7 (rather than 9) ODFs which taper and then terminate near the distal end of the principal piece. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:27:27Z cellular_component owl:Class GO:0033961 biolink:NamedThing cis-stilbene-oxide hydrolase activity Catalysis of the reaction: cis-stilbene oxide + H2O = (+)-(1R,2R)-1,2-diphenylethane-1,2-diol. tmpzr1t_l9r_go_relaxed.owl benzo[a]pyrene-4,5-oxide hydratase activity|microsomal epoxide hydratase activity|epoxide hydrase activity|mEH|aryl epoxide hydrase activity|microsomal epoxide hydrase activity|cis-epoxide hydrolase activity|benzo(a)pyrene-4,5-epoxide hydratase activity|epoxide hydratase activity|microsomal epoxide hydrolase activity|arene-oxide hydratase activity RHEA:23900|EC:3.3.2.9|MetaCyc:3.3.2.9-RXN|Reactome:R-HSA-5694077 molecular_function owl:Class GO:0009338 biolink:NamedThing exodeoxyribonuclease V complex An enzyme complex that catalyzes exonucleolytic cleavage (in the presence of ATP) in either 5' to 3' or 3' to 5' direction to yield 5'-phosphooligonucleotides. Exodeoxyribonuclease V shows a preference for double-stranded DNA and possesses DNA-dependent ATPase activity. It acts endonucleolytically on single-stranded circular DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016844 biolink:NamedThing strictosidine synthase activity Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. tmpzr1t_l9r_go_relaxed.owl STR activity|3-alpha(S)-strictosidine tryptamine-lyase activity|3-alpha(S)-strictosidine tryptamine-lyase (secologanin-forming)|strictosidine synthetase activity KEGG_REACTION:R03738|EC:4.3.3.2|RHEA:15013|MetaCyc:STRICTOSIDINE-SYNTHASE-RXN molecular_function owl:Class GO:0031799 biolink:NamedThing type 2 metabotropic glutamate receptor binding Binding to a type 2 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 2 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0090113 biolink:NamedThing regulation of ER to Golgi vesicle-mediated transport by GTP hydrolysis The GTP hydrolysis process that modulates the rate, frequency, or extent of ER to Golgi vesicle-mediated transport, the directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-06T09:16:14Z biological_process owl:Class GO:0097750 biolink:NamedThing endosome membrane tubulation A membrane tubulation process occurring in an endosome membrane. tmpzr1t_l9r_go_relaxed.owl endosomal membrane tubulation pr 2016-12-21T12:33:09Z biological_process owl:Class GO:0018979 biolink:NamedThing trichloroethylene metabolic process The chemical reactions and pathways involving trichloroethylene, a toxic, colorless, photoreactive, chlorinated hydrocarbon liquid, commonly used as a metal degreaser and solvent. tmpzr1t_l9r_go_relaxed.owl trichloroethene metabolism|TCE metabolism|trichloroethylene metabolism|trichloroethene metabolic process|TCE metabolic process UM-BBD_pathwayID:tce biological_process owl:Class GO:1904983 biolink:NamedThing glycine import into mitochondrion The process in which glycine is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl transmembrane glycine transport from cytosol to mitochondrion vw 2016-02-28T21:53:44Z biological_process owl:Class GO:0033097 biolink:NamedThing amyloplast membrane Either of the lipid bilayers that surround an amyloplast and form the amyloplast envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032807 biolink:NamedThing DNA ligase IV complex A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif1p. tmpzr1t_l9r_go_relaxed.owl DNA ligase IV-XRCC4 complex cellular_component owl:Class GO:0010949 biolink:NamedThing negative regulation of intestinal phytosterol absorption Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of phytosterols into the blood by absorption from the small intestine. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T11:02:06Z biological_process owl:Class GO:0061872 biolink:NamedThing hepatic stellate cell contraction The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a hepatic stellate cell. tmpzr1t_l9r_go_relaxed.owl dph 2017-05-01T13:25:18Z biological_process owl:Class GO:0009146 biolink:NamedThing purine nucleoside triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl purine nucleoside triphosphate catabolism|purine nucleoside triphosphate degradation|purine nucleoside triphosphate breakdown biological_process owl:Class GO:0031483 biolink:NamedThing myosin XIII complex A myosin complex containing one or more class XIII myosin heavy chains and associated light chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009554 biolink:NamedThing megasporogenesis The process in which the megasporocyte undergoes meiosis, giving rise to four haploid megaspores in the nucellus. tmpzr1t_l9r_go_relaxed.owl megaspore mother cell meiosis|megaspore development|meiosis of the megasporocyte|meiotic division of the megasporocyte biological_process owl:Class GO:0086062 biolink:NamedThing voltage-gated sodium channel activity involved in Purkinje myocyte action potential Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of a Purkinje myocyte contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-17T01:50:43Z molecular_function owl:Class GO:0018739 biolink:NamedThing 4-hydroxybenzoyl-CoA thioesterase activity Catalysis of the reaction: 4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoyl-CoA hydrolase activity|4-hydroxybenzoyl-CoA thiolesterase activity MetaCyc:3.1.2.23-RXN|UM-BBD_reactionID:r0141|KEGG_REACTION:R01301|RHEA:11948|EC:3.1.2.23 molecular_function owl:Class GO:0004808 biolink:NamedThing tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing 5-aminomethyl-2-thiouridine = S-adenosyl-L-homocysteine + tRNA containing 5-methylaminomethyl-2-thiouridylate. tmpzr1t_l9r_go_relaxed.owl tRNA 5-methylaminomethyl-2-thiouridylate 5'-methyltransferase activity|S-adenosyl-L-methionine:tRNA (5-methylaminomethyl-2-thio-uridylate)-methyltransferase activity|transfer ribonucleate 5-methylaminomethyl-2-thiouridylate 5-methyltransferase activity MetaCyc:2.1.1.61-RXN|RHEA:19569|EC:2.1.1.61|KEGG_REACTION:R00601 GO:0016425 molecular_function owl:Class GO:1901795 biolink:NamedThing 3-(3-hydroxyphenyl)propanoate biosynthetic process The chemical reactions and pathways resulting in the formation of 3-(3-hydroxyphenyl)propanoate. tmpzr1t_l9r_go_relaxed.owl 3-(3-hydroxyphenyl)propanoate synthesis|3-(3-hydroxyphenyl)propanoate anabolism|3-(3-hydroxyphenyl)propanoate biosynthesis|3-(3-hydroxyphenyl)propanoate formation yaf 2013-01-16T11:47:21Z biological_process owl:Class GO:0009749 biolink:NamedThing response to glucose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. tmpzr1t_l9r_go_relaxed.owl response to glucose stimulus biological_process owl:Class GO:0070379 biolink:NamedThing high mobility group box 1 binding Binding to high mobility group box 1 (HMBGB1). tmpzr1t_l9r_go_relaxed.owl HMGB1 binding molecular_function owl:Class GO:0047513 biolink:NamedThing 1,2-alpha-L-fucosidase activity Catalysis of the reaction: H2O + methyl-2-alpha-L-fucopyranosyl-beta-D-galactoside = L-fucose + methyl beta-D-galactoside. tmpzr1t_l9r_go_relaxed.owl almond emulsin fucosidase II activity|2-alpha-L-fucopyranosyl-beta-D-galactoside fucohydrolase activity|almond emulsin fucosidase activity|alpha-(1->2)-L-fucosidase activity EC:3.2.1.63|RHEA:10816|MetaCyc:12-ALPHA-L-FUCOSIDASE-RXN molecular_function owl:Class GO:0070776 biolink:NamedThing MOZ/MORF histone acetyltransferase complex A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-02T12:06:04Z cellular_component owl:Class GO:0047846 biolink:NamedThing deoxynucleotide 3'-phosphatase activity Catalysis of the reaction: a deoxynucleoside 3'-phosphate + H2O = a deoxynucleoside + phosphate. tmpzr1t_l9r_go_relaxed.owl 3'-deoxyribonucleotidase activity|3'-deoxynucleotidase activity|deoxyribonucleotide 3'-phosphohydrolase activity MetaCyc:DEOXYNUCLEOTIDE-3-PHOSPHATASE-RXN|EC:3.1.3.34|RHEA:10092 molecular_function owl:Class GO:1905075 biolink:NamedThing positive regulation of tight junction disassembly Any process that activates or increases the frequency, rate or extent of tight junction disassembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of occluding cell junction disassembly|activation of occluding cell junction disassembly|upregulation of tight junction disassembly|up-regulation of tight junction disassembly|up regulation of occluding cell junction disassembly|upregulation of occluding cell junction disassembly|positive regulation of occluding junction disassembly|activation of occluding junction disassembly|activation of tight junction disassembly|up-regulation of occluding cell junction disassembly|up regulation of tight junction disassembly rl 2016-03-23T19:33:10Z biological_process owl:Class GO:0070788 biolink:NamedThing conidiophore stalk development The process whose specific outcome is the progression of the conidiophore stalk over time, from its formation to the mature structure. The conidiophore stalk is part of a specialized hypha that extends aerially from the growth substrate and supports structures from which conidia, or asexual spores, develop. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-08T01:31:44Z biological_process owl:Class GO:0015970 biolink:NamedThing guanosine tetraphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine tetraphosphate (5'-ppGpp-3') biosynthesis|guanosine tetraphosphate anabolism|guanosine tetraphosphate synthesis|guanosine tetraphosphate (5'-ppGpp-3') biosynthetic process|guanosine tetraphosphate formation|guanosine tetraphosphate biosynthesis biological_process owl:Class GO:0033715 biolink:NamedThing nucleoside oxidase activity Catalysis of the reactions: inosine + O2 = 9-riburonosylhypoxanthine + 2 H2O; (1a) 2 inosine + O2 = 2 5'-dehydroinosine + 2 H2O, and (1b) 2 5'-dehydroinosine + O2 = 2 9-riburonosylhypoxanthine + 2 H2O. tmpzr1t_l9r_go_relaxed.owl nucleoside:oxygen 5'-oxidoreductase activity EC:1.1.3.28|RHEA:28651|MetaCyc:NUCLEOSIDE-OXIDASE-RXN molecular_function owl:Class GO:1901061 biolink:NamedThing guaiacyl lignin metabolic process The chemical reactions and pathways involving guaiacyl lignin. tmpzr1t_l9r_go_relaxed.owl G-lignin metabolic process|guaiacyl lignin metabolism tt 2012-06-29T02:46:39Z biological_process owl:Class GO:0008936 biolink:NamedThing nicotinamidase activity Catalysis of the reaction: nicotinamide + H2O = nicotinate + NH3. tmpzr1t_l9r_go_relaxed.owl YNDase activity|nicotinamide amidohydrolase activity|nicotinamide amidase activity|nicotinamide deaminase activity|NAMase activity|nicotine deamidase activity EC:3.5.1.19|RHEA:14545|MetaCyc:NICOTINAMID-RXN molecular_function owl:Class GO:2001139 biolink:NamedThing negative regulation of phospholipid transport Any process that stops, prevents or reduces the frequency, rate or extent of phospholipid transport. tmpzr1t_l9r_go_relaxed.owl kmv 2011-10-14T06:16:11Z biological_process owl:Class GO:0016426 biolink:NamedThing tRNA (adenine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methyladenine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102946 biolink:NamedThing soyasapogenol E UDP-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + soyasapogenol E <=> UDP + a soyasapogenol E monoglucoside. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9038 molecular_function owl:Class GO:0033651 biolink:NamedThing host cell plastid Any member of a family of organelles as found in the cytoplasm of host cells, which are membrane-bounded and contain DNA. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120149 biolink:NamedThing host cell peroxisome A small host cell organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. tmpzr1t_l9r_go_relaxed.owl host peroxisome krc 2018-04-13T15:36:40Z cellular_component owl:Class GO:0018746 biolink:NamedThing phenanthrene-3,4-epoxide hydrolase activity Catalysis of the reaction: phenanthrene-3,4-oxide + H2O = trans-3,4-dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0535 molecular_function owl:Class GO:0046712 biolink:NamedThing GDP catabolic process The chemical reactions and pathways resulting in the breakdown of GDP, guanosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP catabolism|GDP degradation|GDP breakdown biological_process owl:Class GO:0047126 biolink:NamedThing N5-(carboxyethyl)ornithine synthase activity Catalysis of the reaction: N(5)-[1(S)-1-carboxyethyl]-L-ornithine + H(2)O + NADP(+) = L-ornithine + H(+) + NADPH + pyruvate. tmpzr1t_l9r_go_relaxed.owl N5-(L-1-carboxyethyl)-L-ornithine:NADP+ oxidoreductase (L-ornithine-forming)|5-N-(L-1-carboxyethyl)-L-ornithine:NADP+ oxidoreductase (L-ornithine-forming) MetaCyc:1.5.1.24-RXN|EC:1.5.1.24|KEGG_REACTION:R00666|RHEA:18661 molecular_function owl:Class GO:0005722 biolink:NamedThing beta-heterochromatin A diffusely banded region of heterochromatin located between euchromatin and alpha-heterochromatin in the polytene chromosome chromocenter; normally replicated during polytenization. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031413 biolink:NamedThing regulation of buoyancy Any process that modulates an organism's tendency or ability to rise or float in a fluid medium such as water or air, often through the use of stored gases. tmpzr1t_l9r_go_relaxed.owl buoyancy regulation biological_process owl:Class GO:0050267 biolink:NamedThing rubber cis-polyprenylcistransferase activity Catalysis of the reaction: poly-cis-polyprenyl diphosphate + isopentenyl diphosphate = diphosphate + a poly-cis-polyprenyl diphosphate longer by one C5 unit. tmpzr1t_l9r_go_relaxed.owl cis-prenyl transferase activity|rubber polymerase activity|isopentenyl pyrophosphate cis-1,4-polyisoprenyl transferase activity|rubber allyltransferase activity|rubber prenyltransferase activity|poly-cis-polyprenyl-diphosphate:isopentenyl-diphosphate polyprenylcistransferase activity|rubber transferase activity EC:2.5.1.20|RHEA:18801|MetaCyc:2.5.1.20-RXN molecular_function owl:Class GO:0015504 biolink:NamedThing cytosine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cytosine(out) + H+(out) = cytosine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl cytosine permease activity|cytosine:hydrogen ion symporter activity molecular_function owl:Class GO:0005952 biolink:NamedThing cAMP-dependent protein kinase complex An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer. tmpzr1t_l9r_go_relaxed.owl cyclic AMP-dependent protein kinase complex|adenosine 3',5'-cyclophosphate-dependent protein kinase complex|3',5' cAMP-dependent protein kinase complex|PKA|3',5'-cAMP-dependent protein kinase complex cellular_component owl:Class GO:0035364 biolink:NamedThing thymine transport The directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl thymine transmembrane transport|5-methyluracil transport bf 2010-03-11T10:20:24Z biological_process owl:Class GO:0050744 biolink:NamedThing protein-FMN linkage via 3'-(8alpha-FMN)-L-histidine The formation of a protein-FMN linkage via 3'-(8alpha-FMN)-L-histidine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0353 biological_process owl:Class GO:0035896 biolink:NamedThing positive regulation of mast cell degranulation in other organism Any process in which an organism increases the frequency, rate or extent of blood mast cell degranulation in another organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of mast cell degranulation in other organism|upregulation of mast cell degranulation in other organism bf 2011-06-15T02:49:03Z biological_process owl:Class GO:0070543 biolink:NamedThing response to linoleic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a linoleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to linoleate biological_process owl:Class GO:0001079 biolink:NamedThing nitrogen catabolite regulation of transcription from RNA polymerase II promoter A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter by nitrogen catabolites krc 2010-10-27T03:29:01Z biological_process owl:Class GO:1904885 biolink:NamedThing beta-catenin destruction complex assembly The aggregation, arrangement and bonding together of a set of components to form a beta-catenin destruction complex. tmpzr1t_l9r_go_relaxed.owl beta-catenin degradation complex formation|beta-catenin destruction complex formation|APC-Axin-1-beta-catenin complex formation|Axin-APC-beta-catenin-GSK3B complex formation|23S APC complex formation|BDC formation|beta-catenin degradation complex assembly|APC-Axin-1-beta-catenin complex assembly|Axin-APC-beta-catenin-GSK3B complex assembly|BDC assembly|destruction complex formation|23S APC complex assembly bf 2016-01-05T11:40:55Z biological_process owl:Class GO:0036342 biolink:NamedThing post-anal tail morphogenesis The process in which a post-anal tail is generated and organized. A post-anal tail is a muscular region of the body that extends posterior to the anus. The post-anal tail may aid locomotion and balance. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-11T13:54:49Z biological_process owl:Class GO:0009134 biolink:NamedThing nucleoside diphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside diphosphate degradation|nucleoside diphosphate breakdown|nucleoside diphosphate catabolism biological_process owl:Class GO:0035020 biolink:NamedThing regulation of Rac protein signal transduction Any process that modulates the frequency, rate or extent of Rac protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051558 biolink:NamedThing phlobaphene metabolic process The chemical reactions and pathways involving phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols. tmpzr1t_l9r_go_relaxed.owl phlobaphene metabolism biological_process owl:Class GO:0061270 biolink:NamedThing mesonephric intraglomerular mesangial cell proliferation The multiplication or reproduction of intraglomerular glomerular mesangium cells in the mesonephros by cell division, resulting in the expansion of their population. Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney. They are required for filtration, structural support and phagocytosis. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T03:23:10Z biological_process owl:Class GO:1900213 biolink:NamedThing positive regulation of mesenchymal cell apoptotic process involved in metanephros development Any process that activates or increases the frequency, rate or extent of mesenchymal cell apoptotic process involved in metanephros development. tmpzr1t_l9r_go_relaxed.owl up-regulation of mesenchymal cell apoptosis involved in metanephros development|activation of mesenchymal cell apoptosis involved in metanephros development|positive regulation of mesenchymal cell apoptosis involved in metanephros development|upregulation of mesenchymal cell apoptosis involved in metanephros development|up regulation of mesenchymal cell apoptosis involved in metanephros development yaf 2012-03-22T10:53:09Z biological_process owl:Class GO:1901833 biolink:NamedThing all-trans-neoxanthin biosynthetic process The chemical reactions and pathways resulting in the formation of all-trans-neoxanthin. tmpzr1t_l9r_go_relaxed.owl neoxanthin anabolism|neoxanthin formation|neoxanthin biosynthesis|neoxanthin synthesis|all-trans-neoxanthin anabolism|all-trans-neoxanthin synthesis|neoxanthin biosynthetic process|all-trans-neoxanthin biosynthesis|all-trans-neoxanthin formation yaf 2013-01-22T12:43:56Z biological_process owl:Class GO:0099182 biolink:NamedThing presynaptic intermediate filament cytoskeleton The intermediate filament cytoskeleton that is part of a presynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-01T18:10:21Z cellular_component owl:Class GO:0047905 biolink:NamedThing fructose-6-phosphate phosphoketolase activity Catalysis of the reaction: D-fructose 6-phosphate + phosphate = acetyl phosphate + D-erythrose 4-phosphate + H2O. tmpzr1t_l9r_go_relaxed.owl D-fructose-6-phosphate D-erythrose-4-phosphate-lyase (adding phosphate; acetyl-phosphate-forming)|D-fructose-6-phosphate D-erythrose-4-phosphate-lyase (phosphate-acetylating) activity EC:4.1.2.22|MetaCyc:FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN|RHEA:12196 molecular_function owl:Class GO:0070416 biolink:NamedThing trehalose metabolism in response to water deprivation The chemical reactions and pathways involving trehalose that occur as a result of deprivation of water. tmpzr1t_l9r_go_relaxed.owl trehalose metabolic process involved in response to water deprivation biological_process owl:Class GO:0031607 biolink:NamedThing nuclear proteasome core complex, beta-subunit complex The subunits forming the inner ring of the core complex of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047231 biolink:NamedThing pyridoxine 5'-O-beta-D-glucosyltransferase activity Catalysis of the reaction: pyridoxine + UDP-D-glucose = 5'-O-beta-D-glucosylpyridoxine + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:pyridoxine 5'-O-beta-D-glucosyltransferase activity|UDP-glucose:pyridoxine 5'-O-beta-D-glucosyltransferase activity|UDP-glucose-pyridoxine glucosyltransferase activity|UDP-glucose:pyridoxine 5'-O-beta-glucosyltransferase activity|uridine diphosphoglucose-pyridoxine 5'-beta-glucosyltransferase activity RHEA:20177|KEGG_REACTION:R01912|EC:2.4.1.160|MetaCyc:2.4.1.160-RXN molecular_function owl:Class GO:0036004 biolink:NamedThing GAF domain binding Binding to a GAF protein domain. tmpzr1t_l9r_go_relaxed.owl bf 2011-09-20T04:20:42Z molecular_function owl:Class GO:0019937 biolink:NamedThing protein catenane formation via N6-(L-isoaspartyl)-L-lysine, autocatalytic The autocatalytic formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues; known to occur in the capsid of some bacteriophage, such as HK97, where it is thought to provide a mechanism for stabilizing the capsid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0294 biological_process owl:Class GO:0018419 biolink:NamedThing protein catenane formation The aggregation, arrangement and bonding together of a protein structure comprising two or more rings that are interlocked but not covalently joined; resembling the links of a chain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006052 biolink:NamedThing N-acetylmannosamine biosynthetic process The chemical reactions and pathways resulting in the formation of N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose. tmpzr1t_l9r_go_relaxed.owl N-acetylmannosamine anabolism|N-acetylmannosamine formation|N-acetylmannosamine synthesis|N-acetylmannosamine biosynthesis biological_process owl:Class GO:0062056 biolink:NamedThing compound eye pigment cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a compound eye pigment cell, a cell of the retina containing screening pigments that functions to screen photoreceptors from light leaking from adjacent ommatidia. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-01T12:59:42Z biological_process owl:Class GO:0047973 biolink:NamedThing guanidinoacetate kinase activity Catalysis of the reaction: ATP + guanidinoacetate = ADP + 2 H(+) + phosphoguanidinoacetate. tmpzr1t_l9r_go_relaxed.owl guanidoacetate kinase activity|glycocyamine kinase activity|ATP:guanidinoacetate N-phosphotransferase activity MetaCyc:GUANIDOACETATE-KINASE-RXN|EC:2.7.3.1|RHEA:14145|KEGG_REACTION:R02575 molecular_function owl:Class GO:1904616 biolink:NamedThing regulation of actin binding Any process that modulates the frequency, rate or extent of actin binding. tmpzr1t_l9r_go_relaxed.owl regulation of membrane associated actin binding mr 2015-08-27T19:08:56Z biological_process owl:Class GO:0016989 biolink:NamedThing sigma factor antagonist activity The function of binding to a sigma factor and stopping, preventing or reducing the rate of its transcriptional activity. tmpzr1t_l9r_go_relaxed.owl anti-sigma factor activity molecular_function owl:Class GO:0036169 biolink:NamedThing 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity Catalysis of the reaction: 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid -> 2-methoxy-6-decaprenylphenol + CO2. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2162195 bf 2012-03-27T04:47:47Z molecular_function owl:Class GO:0031826 biolink:NamedThing type 2A serotonin receptor binding Binding to a type 2A serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 2A serotonin receptor ligand|5-hydroxytryptamine 2A receptor binding molecular_function owl:Class GO:0032194 biolink:NamedThing ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate The chemical reactions and pathways resulting in the formation of ubiquinone, via the intermediates 3,4-dihydroxy-5-polyprenylbenzoate and 3-methoxy-4-hydroxy-5-polyprenylbenzoate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047702 biolink:NamedThing beta-lysine 5,6-aminomutase activity Catalysis of the reaction: (3S)-3,6-diaminohexanoate = (3S,5S)-3,5-diaminohexanoate. tmpzr1t_l9r_go_relaxed.owl (3S)-3,6-diaminohexanoate 5,6-aminomutase activity|b-lysine 5,6-aminomutase activity|L-beta-lysine 5,6-aminomutase activity|beta-lysine mutase activity RHEA:21736|MetaCyc:BETA-LYSINE-56-AMINOMUTASE-RXN|EC:5.4.3.3|KEGG_REACTION:R03275 molecular_function owl:Class GO:0035995 biolink:NamedThing detection of muscle stretch The series of events by which a muscle stretch stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-30T01:53:35Z biological_process owl:Class GO:0035994 biolink:NamedThing response to muscle stretch Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a myofibril being extended beyond its slack length. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-30T01:52:31Z biological_process owl:Class GO:1990933 biolink:NamedThing microtubule cytoskeleton attachment to nuclear envelope A process in which the microtubule cytoskeleton is attached to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl vw 2016-03-17T08:32:37Z biological_process owl:Class GO:1901485 biolink:NamedThing positive regulation of transcription factor catabolic process Any process that activates or increases the frequency, rate or extent of transcription factor catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of transcription factor degradation|activation of proteasome-mediated transcription factor catabolism|upregulation of transcription factor catabolism|up regulation of transcription factor catabolism|up-regulation of proteasome-mediated transcription factor catabolism|upregulation of transcription factor breakdown|positive regulation of transcription factor degradation|up-regulation of transcription factor catabolism|up regulation of sequence-specific DNA binding transcription factor catabolic process|activation of sequence-specific DNA binding transcription factor catabolic process|up-regulation of transcription factor catabolic process|activation of transcription factor breakdown|up regulation of transcription factor degradation|positive regulation of proteasome-mediated transcription factor catabolism|activation of transcription factor catabolic process|upregulation of transcription factor catabolic process|up-regulation of transcription factor breakdown|upregulation of proteasome-mediated transcription factor catabolism|upregulation of transcription factor degradation|up regulation of proteasome-mediated transcription factor catabolism|up regulation of transcription factor catabolic process|positive regulation of sequence-specific DNA binding transcription factor catabolic process|activation of transcription factor catabolism|positive regulation of transcription factor catabolism|up-regulation of transcription factor degradation|positive regulation of transcription factor breakdown|up-regulation of sequence-specific DNA binding transcription factor catabolic process|up regulation of transcription factor breakdown|upregulation of sequence-specific DNA binding transcription factor catabolic process bf 2012-10-08T09:03:27Z biological_process owl:Class GO:0090416 biolink:NamedThing nicotinate transmembrane transporter activity Enables the transfer of nicotinate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8869603 tb 2011-10-19T11:09:59Z molecular_function owl:Class GO:0043295 biolink:NamedThing glutathione binding Binding to glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033950 biolink:NamedThing xyloglucan-specific exo-beta-1,4-glucanase activity Catalysis of the reaction: xyloglucan + H2O = xyloglucan oligosaccharides. This reaction is the exohydrolysis of 1,4-beta-D-glucosidic linkages in xyloglucan. tmpzr1t_l9r_go_relaxed.owl Cel74A|[(1->6)-alpha-D-xylo]-(1->4)-beta-D-glucan exo-glucohydrolase activity EC:3.2.1.155|MetaCyc:3.2.1.155-RXN molecular_function owl:Class GO:0043774 biolink:NamedThing coenzyme F420-2 alpha-glutamyl ligase activity Catalysis of the reaction: coenzyme F420-2 + L-glutamate + GTP = coenzyme F420-3 + GDP + orthophosphate. tmpzr1t_l9r_go_relaxed.owl F420-2 alpha-glutamyl ligase activity RHEA:42332|EC:6.3.2.32 molecular_function owl:Class GO:0003055 biolink:NamedThing circadian regulation of heart rate by the suprachiasmatic nucleus The process in which the suprachiasmatic nucleus modulates heart rate at different values with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl circadian regulation of heart contraction rate by the suprachiasmatic nucleus|SCN regulation of heart rate|master pacemaker clock regulation of heart rate biological_process owl:Class GO:0003053 biolink:NamedThing circadian regulation of heart rate Any process in which an organism modulates its heart rate at different values with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl circadian regulation of heart contraction rate biological_process owl:Class GO:1903841 biolink:NamedThing cellular response to arsenite(3-) Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenite(3-) stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-22T19:49:35Z biological_process owl:Class GO:1903843 biolink:NamedThing cellular response to arsenite ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenite ion stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-22T19:56:14Z biological_process owl:Class GO:0044025 biolink:NamedThing histone kinase activity (H2B-S14 specific) Catalysis of the transfer of a phosphate group to the serine-14 or an equivalent residue of the N-terminal tail of histone H2B. tmpzr1t_l9r_go_relaxed.owl histone serine kinase activity (H2B-S14 specific)|histone-serine kinase activity (H2B-S14 specific) molecular_function owl:Class GO:1904766 biolink:NamedThing negative regulation of macroautophagy by TORC1 signaling A TORC1 signaling that results in negative regulation of macroautophagy. tmpzr1t_l9r_go_relaxed.owl negative regulation of autophagy in response to cellular starvation by TORC1 signaling|negative regulation of non-specific autophagy by TORC1 signaling|negative regulation of starvation-induced autophagy by TORC1 signaling|negative regulation of macroautophagy by TORC1 signal transduction|negative regulation of starvation-induced autophagy by TORC1 signal transduction|negative regulation of autophagy in response to cellular starvation by TORC1 signal transduction|negative regulation of non-specific autophagy by TORC1 signal transduction dph 2015-10-26T18:34:47Z biological_process owl:Class GO:0102481 biolink:NamedThing 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase activity Catalysis of the reaction: 3D-3,5/4-trihydroxycyclohexane-1,2-dione + H2O <=> 5-deoxy-D-glucuronate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14149|EC:3.7.1.22|RHEA:25836 molecular_function owl:Class GO:0034076 biolink:NamedThing cucurbitadienol synthase activity Catalysis of the reaction: oxidosqualene = cucurbitadienol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021888 biolink:NamedThing hypothalamus gonadotrophin-releasing hormone neuron development The process whose specific outcome is the progression of a hypothalamus gonadotrophin-releasing hormone neuron over time, from initial commitment of its fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl hypothalamus gonadotropin-releasing hormone neuron development biological_process owl:Class GO:0021884 biolink:NamedThing forebrain neuron development The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900477 biolink:NamedThing negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter Any process that stops, prevents, or reduces the frequency, rate or extent of G1/S transition of mitotic cell cycle by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl dgf 2012-05-01T09:01:04Z biological_process owl:Class GO:0070007 biolink:NamedThing glutamic-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism involving a glutamate/glutamine catalytic dyad. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019308 biolink:NamedThing dTDP-mannose biosynthetic process The chemical reactions and pathways resulting in the formation of dTDP-mannose, a substance composed of mannose in glycosidic linkage with deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP-mannose synthesis|dTDP-mannose formation|dTDP-mannose biosynthesis|dTDP-mannose anabolism biological_process owl:Class GO:0061403 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-10T03:15:30Z biological_process owl:Class GO:0031860 biolink:NamedThing telomeric 3' overhang formation The formation of the single stranded telomeric 3' overhang, a conserved feature that ranges in length from 12 nt in budding yeast to approximately 500 nt in humans. tmpzr1t_l9r_go_relaxed.owl telomere 3'-end processing|telomere end processing biological_process owl:Class GO:0018077 biolink:NamedThing protein iodination The addition of one or more iodine atoms to an amino acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid iodination biological_process owl:Class GO:0000403 biolink:NamedThing Y-form DNA binding Binding to a DNA segment shaped like a Y. This shape occurs when DNA contains a region of paired double-stranded DNA on one end and a region of unpaired DNA strands on the opposite end. tmpzr1t_l9r_go_relaxed.owl forked DNA binding|splayed Y-form DNA binding molecular_function owl:Class GO:0034816 biolink:NamedThing anthracene 9,10-dioxygenase activity Catalysis of the reaction: anthracene + 2 H2O = cis-9,10-dihydroanthracene-9,10-diol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1141 molecular_function owl:Class GO:0046175 biolink:NamedThing aldonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group. tmpzr1t_l9r_go_relaxed.owl aldonic acid formation|aldonic acid biosynthesis|aldonic acid synthesis|aldonic acid anabolism biological_process owl:Class GO:0033779 biolink:NamedThing 5beta-cholestane-3alpha,7alpha-diol 12alpha-hydroxylase activity Catalysis of the reaction: 5beta-cholestane-3alpha,7alpha-diol + H(+) + NADPH + O(2) = 5beta-cholestane-3alpha,7alpha,12alpha-triol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl sterol 12alpha-hydroxylase activity|cytochrome P450 8B1|5beta-cholestane-3alpha,7alpha-diol,NADPH:oxygen oxidoreductase (12alpha-hydroxylating) activity|5beta-cholestane-3alpha,7alpha-diol 12alpha-monooxygenase activity|CYP8B1 RHEA:15261|MetaCyc:1.14.13.96-RXN|KEGG_REACTION:R07204|EC:1.14.14.139 molecular_function owl:Class GO:0046862 biolink:NamedThing chromoplast membrane Either of the lipid bilayers that surround a chromoplast and form the chromoplast envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051572 biolink:NamedThing negative regulation of histone H3-K4 methylation Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. tmpzr1t_l9r_go_relaxed.owl down-regulation of histone H3-K4 methylation|down regulation of histone H3-K4 methylation|downregulation of histone H3-K4 methylation|inhibition of histone H3-K4 methylation biological_process owl:Class GO:0071113 biolink:NamedThing alphaIIb-beta3 integrin-ICAM-4 complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell adhesion molecule ICAM-4. tmpzr1t_l9r_go_relaxed.owl ITGAIIb-ITGB3-ICAM4 complex mah 2009-11-13T02:17:59Z cellular_component owl:Class GO:0052791 biolink:NamedThing 3-deoxy-D-glycero-D-galacto-2-nonulosonic acid hydrolase activity Catalysis of the reaction: (2-keto-3-deoxynononic acid)n + H2O = (2-keto-3-deoxynononic acid)n-1 + 2-keto-3-deoxynononic acid. This reaction is the hydrolysis of a 2-keto-3-deoxynononic acid residue from a poly-2-keto-3-deoxynononic acid chain. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxynononic acid sialidase activity ai 2011-10-04T04:53:49Z molecular_function owl:Class GO:0016997 biolink:NamedThing alpha-sialidase activity Catalysis of the hydrolysis of alpha-glycosidic linkages in oligo- or poly(sialic) acids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901949 biolink:NamedThing 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate. tmpzr1t_l9r_go_relaxed.owl 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate synthesis|5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthesis|5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate anabolism|5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate formation ms 2013-02-18T15:50:50Z biological_process owl:Class GO:0080189 biolink:NamedThing primary growth Growth of a plant structure from the time of its initiation by an apical meristem until its expansion is completed. tmpzr1t_l9r_go_relaxed.owl Has its inception in the apical meristems (PO:0020144) and continues in their derivative meristems - protoderm (PO:0006210) and procambium (PO:0025275) - even in older tissues. Primary and secondary growth can occur simultaneously in the same organism. dhl 2012-12-06T15:20:41Z biological_process owl:Class GO:0008210 biolink:NamedThing estrogen metabolic process The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants. tmpzr1t_l9r_go_relaxed.owl oestrogen metabolic process|oestrogen metabolism|estrogen metabolism biological_process owl:Class GO:0031851 biolink:NamedThing kappa-type opioid receptor binding Binding to a kappa-type opioid receptor. tmpzr1t_l9r_go_relaxed.owl kappa-type opioid receptor ligand|dynorphin receptor binding molecular_function owl:Class GO:0003863 biolink:NamedThing 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Catalysis of the reaction: 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)dihydrolipoamide + CO2. tmpzr1t_l9r_go_relaxed.owl alpha-keto-alpha-methylvalerate dehydrogenase activity|3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue (2-methylpropanoyl)transferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)|2-oxoisocaproate dehydrogenase activity|dehydrogenase, branched chain alpha-keto acid activity|BCKDH activity|3-methyl-2-oxobutanoate:lipoamide oxidoreductase (decarboxylating and acceptor-2-methylpropanoylating) activity|branched-chain alpha-keto acid dehydrogenase activity|branched-chain keto acid dehydrogenase activity|alpha-oxoisocaproate dehydrogenase activity|dehydrogenase, 2-oxoisovalerate (lipoate) activity|3-methyl-2-oxobutanoate dehydrogenase (lipoamide) activity|branched chain keto acid dehydrogenase activity|branched-chain (-2-oxoacid) dehydrogenase (BCD) activity|branched-chain ketoacid dehydrogenase activity|alpha-ketoisocaproic dehydrogenase activity|alpha-ketoisovalerate dehydrogenase activity|branched-chain 2-keto acid dehydrogenase activity|alpha-ketoisocaproic-alpha-keto-alpha-methylvaleric dehydrogenase activity|branched-chain 2-oxo acid dehydrogenase activity|branched-chain alpha-oxo acid dehydrogenase activity|2-oxoisovalerate (lipoate) dehydrogenase activity|alpha-ketoacid dehydrogenase activity|alpha-ketoisocaproate dehydrogenase activity|BCOAD activity https://github.com/geneontology/go-ontology/issues/21144 EC:1.2.4.4|RHEA:13457|MetaCyc:1.2.4.4-RXN GO:0003826 molecular_function owl:Class GO:1904160 biolink:NamedThing protein localization to chloroplast starch grain A process in which a protein is transported to, or maintained in, a location within a chloroplast starch grain. tmpzr1t_l9r_go_relaxed.owl protein localisation to chloroplast starch grain|protein localisation in chloroplast starch grain|protein localization in chloroplast starch grain lr 2015-04-20T18:06:17Z biological_process owl:Class GO:1904066 biolink:NamedThing G protein-coupled receptor signaling pathway involved in dauer larval development Any G protein-coupled receptor signaling pathway that is involved in dauer larval development. tmpzr1t_l9r_go_relaxed.owl GPCR signaling pathway involved in dauer larval development|G protein coupled receptor protein signalling pathway involved in dauer larval development|G-protein coupled receptor protein signal transduction involved in dauer larval development|GPCR signalling pathway involved in dauer larval development|G-protein-coupled receptor protein signalling pathway involved in dauer larval development|G protein coupled receptor protein signaling pathway involved in dauer larval development|G-protein coupled receptor protein signaling pathway involved in dauer larval development|G-protein coupled receptor signalling pathway involved in dauer larval development kmv 2015-03-20T00:51:06Z biological_process owl:Class GO:0031960 biolink:NamedThing response to corticosteroid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids. tmpzr1t_l9r_go_relaxed.owl response to corticosteroid stimulus biological_process owl:Class GO:0009717 biolink:NamedThing isoflavonoid biosynthetic process The chemical reactions and pathways resulting in the formation of isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids. tmpzr1t_l9r_go_relaxed.owl isoflavonoid formation|isoflavonoid biosynthesis|isoflavonoid anabolism|isoflavonoid synthesis biological_process owl:Class GO:0046170 biolink:NamedThing methanol catabolic process The chemical reactions and pathways resulting in the breakdown of methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent. tmpzr1t_l9r_go_relaxed.owl methanol breakdown|methanol catabolism|methanol degradation biological_process owl:Class GO:0005602 biolink:NamedThing complement component C1 complex A protein complex composed of six subunits of C1q, each formed of the three homologous polypeptide chains C1QA, C1QB, and C1QB, and tetramer of two C1QR and two C1QS polypeptide chains. tmpzr1t_l9r_go_relaxed.owl complement component C1q complex cellular_component owl:Class GO:0047920 biolink:NamedThing geissoschizine dehydrogenase activity Catalysis of the reaction: geissoschizine + NADP(+) = 4,21-dehydrogeissoschizine + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl geissoschizine:NADP+ 4,21-oxidoreductase activity MetaCyc:GEISSOSCHIZINE-DEHYDROGENASE-RXN|RHEA:11376|EC:1.3.1.36|KEGG_REACTION:R03860 molecular_function owl:Class GO:0071234 biolink:NamedThing cellular response to phenylalanine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:09:36Z biological_process owl:Class GO:0034024 biolink:NamedThing glutamate-putrescine ligase activity Catalysis of the reaction: L-glutamate + ATP + putrescine = gamma-L-glutamylputrescine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl L-glutamate:putrescine ligase (ADP-forming) activity|YcjK|gamma-glutamylputrescine synthetase activity KEGG_REACTION:R07414|RHEA:13633|EC:6.3.1.11|MetaCyc:RXN0-3901 molecular_function owl:Class GO:0102694 biolink:NamedThing kinetin UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + kinetin <=> H+ + 9-(alpha-D-glucosyl)kinetin + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4732 molecular_function owl:Class GO:0018463 biolink:NamedThing 6-hydroxyhexanoate dehydrogenase activity Catalysis of the reaction: 6-hydroxyhexanoate + NAD(+) = 6-oxohexanoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 6-hydroxyhexanoate:NAD+ oxidoreductase activity UM-BBD_reactionID:r0174|RHEA:14225|MetaCyc:6-HYDROXYHEXANOATE-OXIDATION-RXN|EC:1.1.1.258|KEGG_REACTION:R05283 molecular_function owl:Class GO:1900696 biolink:NamedThing negative regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of N',N'',N'''-triacetylfusarinine C biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of N',N'',N'''-triacetylfusarinine C biosynthetic process|downregulation of N',N'',N'''-triacetylfusarinine C biosynthesis|inhibition of N',N'',N'''-triacetylfusarinine C biosynthesis|down regulation of N',N'',N'''-triacetylfusarinine C formation|down-regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|down regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|down-regulation of N',N'',N'''-triacetylfusarinine C formation|down-regulation of N',N'',N'''-triacetylfusarinine C anabolism|down-regulation of N',N'',N'''-triacetylfusarinine C synthesis|downregulation of N',N'',N'''-triacetylfusarinine C biosynthetic process|negative regulation of N',N'',N'''-triacetylfusarinine C synthesis|downregulation of N',N'',N'''-triacetylfusarinine C synthesis|down-regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|inhibition of N',N'',N'''-triacetylfusarinine C synthesis|negative regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|negative regulation of N',N'',N'''-triacetylfusarinine C anabolism|inhibition of N',N'',N'''-triacetylfusarinine C anabolism|downregulation of N',N'',N'''-triacetylfusarinine C formation|downregulation of N',N'',N'''-triacetylfusarinine C anabolism|down regulation of N',N'',N'''-triacetylfusarinine C biosynthesis|inhibition of N',N'',N'''-triacetylfusarinine C formation|down regulation of N',N'',N'''-triacetylfusarinine C anabolism|down regulation of N',N'',N'''-triacetylfusarinine C synthesis|negative regulation of N',N'',N'''-triacetylfusarinine C formation di 2012-05-22T04:54:45Z biological_process owl:Class GO:1990206 biolink:NamedThing jasmonyl-Ile conjugate hydrolase activity Catalysis of the reaction: jasmonyl-Ile + H2O = jasmonic acid + L-isoleucine. tmpzr1t_l9r_go_relaxed.owl JA-Ile hydrolase tb 2013-10-07T18:37:49Z molecular_function owl:Class GO:0043541 biolink:NamedThing UDP-N-acetylglucosamine transferase complex A multienzyme, heterooligomeric complex involved in dolichyl-linked oligosaccharide synthesis. In yeast the complex is composed of Alg7p, which catalyzes the first step (GlcNAc1-PP-Dol from dolichol-phosphate and UDP-GlcNAc), and Alg13p plus Alg14p, the catalytic and anchoring subunits respectively, which together catalyze the second step (GlcNAc2-PP-dolichol from GlcNAc1-PP-Dol and UDP-GlcNAc) of dolichyl-linked oligosaccharide synthesis. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity ; GO:0004577'. cellular_component owl:Class GO:0003945 biolink:NamedThing N-acetyllactosamine synthase activity Catalysis of the reaction: UDP-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine. tmpzr1t_l9r_go_relaxed.owl UDP-galactose-acetylglucosamine galactosyltransferase activity|UDP-Gal:N-acetylglucosamine beta-1,4-galactosyltransferase activity|UDPgalactose-N-acetylglucosamine beta-D-galactosyltransferase activity|beta-(1,4)-galactosyltransferase activity|UDP-galactose N-acetylglucosamine beta-4-galactosyltransferase activity|N-acetylglucosamine (beta-1,4)galactosyltransferase activity|Gal-T|UDPgalactose:N-acetyl-D-glucosamine 4-beta-D-galactosyltransferase activity|beta-1,4-GalT|UDP-galactose-N-acetylglucosamine galactosyltransferase activity|acetyllactosamine synthetase activity|UDP-galactose-N-acetylglucosamine beta-D-galactosyltransferase activity|lactosamine synthetase activity|lactose synthetase A protein|UDP-beta-1,4-galactosyltransferase activity|lactosamine synthase activity|UDP-galactose:N-acetyl-D-glucosamine 4-beta-D-galactosyltransferase activity|beta-1,4-galactosyltransferase activity|UDP-galactose:N-acetylglucosaminide beta-1,4-galactosyltransferase activity|uridine diphosphogalactose-acetylglucosamine galactosyltransferase activity|UDP-galactose-N-acetylglucosamine beta-1,4-galactosyltransferase activity|NAL synthetase activity|N-acetylglucosamine beta-(1,4)-galactosyltransferase activity|UDPgalactose:N-acetylglucosaminyl(beta-1,4)galactosyltransferase activity|beta-N-acetylglucosaminide beta-1,4-galactosyltransferase activity|N-acetyllactosamine synthetase activity RHEA:17745|EC:2.4.1.90|MetaCyc:N-ACETYLLACTOSAMINE-SYNTHASE-RXN molecular_function owl:Class GO:0071819 biolink:NamedThing DUBm complex A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p. tmpzr1t_l9r_go_relaxed.owl deubiquitinating module|SAGA DUBm complex|deubiquitination module mah 2010-09-07T11:19:28Z cellular_component owl:Class GO:0002169 biolink:NamedThing 3-methylcrotonyl-CoA carboxylase complex, mitochondrial A mitochondrial protein complex which is capable of 3-methylcrotonyl-CoA carboxylase activity. In mammals, at least, consists as a dodecamer of 6 alpha and 6 beta subunits. MCCC-alpha has a covalently bound biotin essential for the ATP-dependent carboxylation. MCCC-beta possesses carboxyltransferase activity which presumably is essential for binding to 3-methylcrotonyl-CoA. tmpzr1t_l9r_go_relaxed.owl mitochondrial MCCC complex|mitochondrial 3-methylcrotonyl-CoA carboxylase holoenzyme|mitochondrial methylcrotonoyl-CoA carboxylase complex hjd 2010-03-15T04:58:08Z cellular_component owl:Class GO:1905202 biolink:NamedThing methylcrotonoyl-CoA carboxylase complex A protein complex which is capable of methylcrotonoyl-CoA carboxylase activity. tmpzr1t_l9r_go_relaxed.owl bf 2016-05-16T11:03:20Z cellular_component owl:Class GO:0140468 biolink:NamedThing HRI-mediated signaling A series of reactions in which a signal is passed on to downstream proteins within the cell via HRI (also known as EIF2AK1), an intracellular protein kinase that is activated by stress signals, such as heme deficiency, oxidative stress, osmotic shock, mitochondrial dysfunction and heat shock. tmpzr1t_l9r_go_relaxed.owl EIF2AK1-mediated signaling https://github.com/geneontology/go-ontology/issues/19153 pg 2020-05-26T08:46:15Z biological_process owl:Class GO:0140374 biolink:NamedThing antiviral innate immune response A defense response against viruses mediated through an innate immune response. An innate immune response is mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl pg 2019-10-10T16:41:12Z biological_process owl:Class GO:0035686 biolink:NamedThing sperm fibrous sheath A cytoskeletal structure surrounding the axoneme and outer dense fibers of the sperm flagellum. Consists of two longitudinal columns connected by closely arrayed semicircular ribs that assemble from distal to proximal throughout spermiogenesis. The fibrous sheath probably influences the degree of flexibility, plane of flagellar motion, and the shape of the flagellar beat. tmpzr1t_l9r_go_relaxed.owl flagellum fibrous sheath|flagellar fibrous sheath bf 2011-02-24T09:10:58Z cellular_component owl:Class GO:1990974 biolink:NamedThing actin-dependent nuclear migration The process whereby the centrosome is held at the cell center while the nucleus moves to the cell rear by actin retrograde flow resulting in the position of the centrosome between the nucleus and the leading edge of the cell. tmpzr1t_l9r_go_relaxed.owl actin-dependent nuclear movement hjd 2016-06-22T19:17:02Z biological_process owl:Class GO:0035352 biolink:NamedThing NAD transmembrane transport The process in which a nicotinamide adenine dinucleotide is transported across a membrane; transport may be of either the oxidized form, NAD, or the reduced form, NADH. tmpzr1t_l9r_go_relaxed.owl NAD membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-03-04T03:46:20Z biological_process owl:Class GO:0019398 biolink:NamedThing gallate catabolic process via gallate dioxygenase activity The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, where the first step is the conversion of gallate to (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate catalyzed by gallate dioxygenase. tmpzr1t_l9r_go_relaxed.owl gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate|gallic acid catabolism via 4-carboxy-2-hydroxhexa-2,3-dienedioate|gallate breakdown via 4-carboxy-2-hydroxhexa-2,3-dienedioate|gallate degradation via 4-carboxy-2-hydroxhexa-2,3-dienedioate|gallic acid catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate MetaCyc:GALLATE-DEGRADATION-II-PWY biological_process owl:Class GO:1902703 biolink:NamedThing hexose catabolic process to butan-1-ol The chemical reactions and pathways resulting in the breakdown of hexose to butan-1-ol. tmpzr1t_l9r_go_relaxed.owl hexose catabolic process to butanol|hexose catabolism to butan-1-ol|hexose degradation to butan-1-ol|solventogenesis|hexose catabolic process to 1-butanol|hexose breakdown to butan-1-ol tb 2014-02-19T18:43:04Z GO:1990284 biological_process owl:Class GO:0008110 biolink:NamedThing L-histidine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + L-histidine = 3-(imidazol-5-yl)pyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl histidine-2-oxoglutarate aminotransferase activity|histidine transaminase activity|histidine aminotransferase activity MetaCyc:HISTTRANSAM-RXN|EC:2.6.1.38|KEGG_REACTION:R01161|RHEA:16565 molecular_function owl:Class GO:0019653 biolink:NamedThing anaerobic purine nucleobase catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl anaerobic purine catabolic process|anaerobic purine base catabolism|purine fermentation|anaerobic purine base catabolic process|purine base fermentation MetaCyc:P164-PWY|MetaCyc:PWY-5044|MetaCyc:PWY-5497 biological_process owl:Class GO:0019666 biolink:NamedThing nitrogenous compound fermentation The anaerobic chemical reactions and pathways resulting in the breakdown of a nitrogen-containing compound, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl nitrogenous compound catabolic process biological_process owl:Class GO:0015660 biolink:NamedThing formate efflux transmembrane transporter activity Enables the transfer of formate from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl formate efflux permease activity GO:0015509 molecular_function owl:Class GO:0031019 biolink:NamedThing mitochondrial mRNA editing complex An mRNA editing complex found in the mitochondrion. The best characterized example is that of Trypanosoma brucei, which catalyzes the insertion and deletion of uridylates. tmpzr1t_l9r_go_relaxed.owl mitochondrial editosome cellular_component owl:Class GO:0102712 biolink:NamedThing gibberellin A13,oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A13 + 2-oxoglutarate + O2 <=> gibberellin A43 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6542 molecular_function owl:Class GO:0008884 biolink:NamedThing glutathionylspermidine amidase activity Catalysis of the reaction: N1-(gamma-L-glutamyl-L-cysteinyl-glycyl)-spermidine + H2O = gamma-L-glutamyl-L-cysteinyl-glycine + spermidine. tmpzr1t_l9r_go_relaxed.owl gamma-L-glutamyl-L-cysteinyl-glycine:spermidine amidase activity|GSP amidase activity|glutathionylspermidine amidohydrolase (spermidine-forming) activity EC:3.5.1.78|RHEA:17173|MetaCyc:GSPAMID-RXN molecular_function owl:Class GO:0031218 biolink:NamedThing arabinogalactan endo-1,4-beta-galactosidase activity Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in arabinogalactans. tmpzr1t_l9r_go_relaxed.owl arabinogalactan 4-beta-D-galactanohydrolase activity|arabinogalactanase activity|galactanase activity|endo-1,4-beta-galactanase activity EC:3.2.1.89|MetaCyc:3.2.1.89-RXN molecular_function owl:Class GO:0036402 biolink:NamedThing proteasome-activating activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. tmpzr1t_l9r_go_relaxed.owl proteasome channel opening activity|proteasome channel gating activity|ATPase involved in positive regulation of proteasomal protein catabolic process|proteasome-activating ATPase activity|proteasomal ATPase activity https://github.com/geneontology/go-ontology/issues/20879 EC:5.6.1.5 bf 2013-08-12T11:38:20Z molecular_function owl:Class GO:0052039 biolink:NamedThing disruption by symbiont of host cytoskeleton The process in which an organism effects a change that impairs the structure or function of the host cytoskeleton. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl rounding by symbiont of host cells|modification by symbiont of host cytoskeleton GO:0044054 biological_process owl:Class GO:0140548 biolink:NamedThing envenomation resulting in blood agglutination in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with specific proteins binding to cell-surface carbohydrates and causing calcium-dependent agglutination of blood cells in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in erythrocytes agglutination in other organism|envenomation resulting in red blood cells agglutination in other organism https://github.com/geneontology/go-ontology/issues/18979 pg 2020-11-11T21:42:31Z biological_process owl:Class GO:0140658 biolink:NamedThing ATP-dependent chromatin remodeler activity An activity, driven by ATP hydrolysis, that modulates the contacts between histones and DNA, resulting in a change in chromosome architecture within the nucleosomal array, leading to chromatin remodeling. tmpzr1t_l9r_go_relaxed.owl nucleosome-dependent ATPase activity|ATP hydrolysis-dependent chromatin remodeler activity|ATPase-dependent chromatin remodeler activity|nucleosome-activated ATPase activity https://github.com/geneontology/go-ontology/issues/21786|https://github.com/geneontology/go-ontology/issues/21609|https://github.com/geneontology/go-ontology/issues/6075 pg 2021-06-15T13:57:18Z GO:0070615 molecular_function owl:Class GO:0052739 biolink:NamedThing phosphatidylserine 1-acylhydrolase activity Catalysis of the reaction: phosphatidylserine + H2O = 2-acyl-sn-glycero-3-phosphoserine + fatty acid. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine-specific phospholipase A1 activity EC:3.1.1.32|KEGG_REACTION:R04034|Reactome:R-HSA-8869425 molecular_function owl:Class GO:0018621 biolink:NamedThing 4-sulfobenzoate 3,4-dioxygenase activity Catalysis of the reaction: 4-sulfobenzoate + H(+) + NADH + O(2) = 3,4-dihydroxybenzoate + NAD(+) + sulfite. tmpzr1t_l9r_go_relaxed.owl 4-sulfobenzoate 3,4-dioxygenase system|4-sulfobenzoate,NADH:oxygen oxidoreductase (3,4-hydroxylating, sulfite-forming)|4-sulfobenzoate dioxygenase activity|4-sulphobenzoate 3,4-dioxygenase activity KEGG_REACTION:R01636|RHEA:13937|EC:1.14.12.8|UM-BBD_reactionID:r0293|MetaCyc:4-SULFOBENZOATE-34-DIOXYGENASE-RXN molecular_function owl:Class GO:0009904 biolink:NamedThing chloroplast accumulation movement The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis. tmpzr1t_l9r_go_relaxed.owl low-fluence-rate response biological_process owl:Class GO:0097430 biolink:NamedThing copper ion import across prospore membrane The directed movement of copper ions from outside of a cell, across an ascospore-type prospore membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl copper ion transport into forespores|copper ion import into ascospore-type prospore pr 2012-11-16T12:37:05Z biological_process owl:Class GO:0017192 biolink:NamedThing N-terminal peptidyl-glutamine acetylation The acetylation of a glutamine residue in protein to form the N5-methyl-L-glutamine derivative. The occurrence of this modification has not been confirmed. Its annotation in sequence databases is either due to the misidentification of 2-pyrrolidone-5-carboxylic acid, or to inappropriate homolog comparisons when proteolytic modification is more probable. tmpzr1t_l9r_go_relaxed.owl RESID:AA0045 biological_process owl:Class GO:0102001 biolink:NamedThing isoleucine N-monooxygenase (oxime forming) activity Catalysis of the reaction: L-isoleucine + 2 O2 + 2 NADPH(4-) + 2 H+ <=> (E)-2-methylbutanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:1.14.13.117-RXN|RHEA:28602|EC:1.14.14.39 molecular_function owl:Class GO:0015971 biolink:NamedThing guanosine tetraphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine tetraphosphate (5'-ppGpp-3') catabolic process|guanosine tetraphosphate breakdown|guanosine tetraphosphate catabolism|guanosine tetraphosphate degradation|guanosine tetraphosphate (5'-ppGpp-3') catabolism biological_process owl:Class GO:1902110 biolink:NamedThing positive regulation of mitochondrial membrane permeability involved in apoptotic process Any positive regulation of mitochondrial membrane permeability that is involved in apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of transport across mitochondrial membrane involved in apoptotic programmed cell death|positive regulation of mitochondrial membrane permeability involved in apoptotic program|positive regulation of transport across mitochondrial membrane involved in type I programmed cell death|mitochondrial membrane permeability transition involved in programmed cell death by apoptosis|positive regulation of transport across mitochondrial membrane involved in apoptotic process|mitochondrial permeability transition involved in signaling (initiator) caspase activity|positive regulation of transport across mitochondrial membrane involved in signaling (initiator) caspase activity|mitochondrial membrane permeabilization involved in type I programmed cell death|positive regulation of transport across mitochondrial membrane involved in apoptotic program|mitochondrial permeability transition involved in apoptotic cell death|positive regulation of transport across mitochondrial membrane involved in programmed cell death by apoptosis|positive regulation of mitochondrial membrane permeability involved in apoptotic cell death|mitochondrial membrane permeability transition involved in apoptotic cell death|mitochondrial membrane permeabilization involved in apoptosis|mitochondrial membrane permeabilization involved in apoptotic program|positive regulation of mitochondrial membrane permeability involved in type I programmed cell death|mitochondrial membrane permeability transition involved in type I programmed cell death|positive regulation of transport across mitochondrial membrane involved in apoptotic cell death|mitochondrial permeability transition involved in apoptotic process|positive regulation of mitochondrial membrane permeability involved in programmed cell death by apoptosis|mitochondrial permeability transition involved in type I programmed cell death|positive regulation of mitochondrial membrane permeability involved in signaling (initiator) caspase activity|mitochondrial membrane permeabilization involved in apoptotic cell death|mitochondrial membrane permeabilization involved in apoptotic process|mitochondrial membrane permeability transition involved in apoptotic programmed cell death|mitochondrial permeability transition involved in apoptosis|positive regulation of transport across mitochondrial membrane involved in apoptosis|mitochondrial membrane permeabilization involved in signaling (initiator) caspase activity|mitochondrial membrane permeability transition involved in signaling (initiator) caspase activity|mitochondrial membrane permeability transition involved in apoptotic program|mitochondrial membrane permeabilization involved in apoptotic programmed cell death|mitochondrial membrane permeability transition involved in apoptosis|positive regulation of mitochondrial membrane permeability involved in apoptotic programmed cell death|mitochondrial permeability transition involved in apoptotic programmed cell death|mitochondrial permeability transition involved in apoptotic program|mitochondrial permeability transition involved in programmed cell death by apoptosis|mitochondrial membrane permeabilization involved in programmed cell death by apoptosis|positive regulation of mitochondrial membrane permeability involved in apoptosis|mitochondrial membrane permeability transition involved in apoptotic process Individual components of the mitochondrial permeability transition pore complex, such as the voltage-dependent anion channel (VDAC), the adenine nucleotide translocase (ANT) and cyclophilin-D (CyP-D), are involved in this process. pr 2013-05-03T12:13:56Z biological_process owl:Class GO:0036340 biolink:NamedThing chitin-based cuticle sclerotization by biomineralization The process of hardening a chitin-based cuticle by mineral incorporation. For example, the cuticle of crustaceans is hardened by the incorporation of calcium carbonate. tmpzr1t_l9r_go_relaxed.owl chitin-based cuticle hardening by biomineralisation bf 2012-09-11T13:50:04Z biological_process owl:Class GO:0052620 biolink:NamedThing thymine dehydrogenase activity Catalysis of the reaction: H2O + thymine + acceptor = 5-methyl-barbiturate + donor-H2. tmpzr1t_l9r_go_relaxed.owl EC:1.17.99.4|MetaCyc:RXN-8646|RHEA:13469 molecular_function owl:Class GO:0071925 biolink:NamedThing thymic stromal lymphopoietin production The appearance of thymic stromal lymphopoietin (TSLP) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl TSLP production mah 2010-09-28T11:38:55Z biological_process owl:Class GO:0008231 biolink:NamedThing repressor ecdysone receptor complex A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) plus an associated corepressor such as SMRTER, which represses transcription of target genes. tmpzr1t_l9r_go_relaxed.owl repressor ecdysone receptor holocomplex cellular_component owl:Class GO:0033979 biolink:NamedThing box H/ACA RNA metabolic process The chemical reactions and pathways involving box H/ACA type small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl box H/ACA snoRNA metabolic process|box H/ACA sRNA metabolic process https://github.com/geneontology/go-ontology/issues/20416 biological_process owl:Class GO:0021623 biolink:NamedThing oculomotor nerve formation The process that gives rise to the oculomotor nerve. This process pertains to the initial formation of a structure from unspecified parts. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle. tmpzr1t_l9r_go_relaxed.owl CN III biosynthesis|CN III formation biological_process owl:Class GO:0006712 biolink:NamedThing mineralocorticoid catabolic process The chemical reactions and pathways resulting in the breakdown of mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. tmpzr1t_l9r_go_relaxed.owl mineralocorticoid catabolism|mineralocorticoid breakdown|mineralocorticoid degradation biological_process owl:Class GO:2000940 biolink:NamedThing negative regulation of plant-type cell wall cellulose catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of plant-type cell wall cellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of plant-type cell wall polysaccharide breakdown tt 2011-08-01T02:07:17Z biological_process owl:Class GO:0051685 biolink:NamedThing maintenance of ER location Any process in which the endoplasmic reticulum is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of endoplasmic reticulum localization|maintenance of ER localization biological_process owl:Class GO:0034542 biolink:NamedThing trimethylarsine oxidase activity Catalysis of the reaction: trimethylarsine oxide + 2 H+ + 2 e- = trimethylarsine + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0807 molecular_function owl:Class GO:0047069 biolink:NamedThing 7,8-dihydroxykynurenate 8,8a-dioxygenase activity Catalysis of the reaction: 7,8-dihydroxykynurenate + O(2) = 5-(3-carboxylato-3-oxoprop-1-en-1-yl)-4,6-dihydroxypyridine-2-carboxylate + H(+). tmpzr1t_l9r_go_relaxed.owl 7,8-dihydroxykynurenate oxygenase activity|7,8-dihydroxykynurenate 8,8alpha-dioxygenase activity|7,8-dihydroxykynurenate:oxygen 8,8a-oxidoreductase (decyclizing)|7,8-dihydroxykynurenate:oxygen 8,8alpha-oxidoreductase (decyclizing) EC:1.13.11.10|MetaCyc:1.13.11.10-RXN|RHEA:23400|KEGG_REACTION:R03253 molecular_function owl:Class GO:1904996 biolink:NamedThing positive regulation of leukocyte adhesion to vascular endothelial cell Any process that activates or increases the frequency, rate or extent of leukocyte adhesion to vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl up regulation of leukocyte adhesion to vascular endothelial cell|upregulation of leukocyte adhesion to vascular endothelial cell|activation of leukocyte adhesion to vascular endothelial cell|up-regulation of leukocyte adhesion to vascular endothelial cell bc 2016-03-01T10:59:22Z biological_process owl:Class GO:1904566 biolink:NamedThing cellular response to 1-oleoyl-sn-glycerol 3-phosphate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-oleoyl-sn-glycerol 3-phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to lysophosphatidic acid|cellular response to LPA|cellular response to 1-oleoyl lysophosphatidic acid|cellular response to oleoyl-L-alpha-lysophosphatidic acid|cellular response to oleoyl lysophosphatidic acid sl 2015-08-19T15:37:05Z biological_process owl:Class GO:1990680 biolink:NamedThing response to melanocyte-stimulating hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a melanocyte-stimulating hormone stimulus. The binding of any one of three melanocyte-stimulating hormones causes dispersal of melanosomes in melanophores of poikilothermic vertebrates. tmpzr1t_l9r_go_relaxed.owl response to MSH sl 2015-03-02T20:49:46Z biological_process owl:Class GO:0045657 biolink:NamedThing positive regulation of monocyte differentiation Any process that activates or increases the frequency, rate or extent of monocyte differentiation. tmpzr1t_l9r_go_relaxed.owl upregulation of monocyte differentiation|activation of monocyte differentiation|stimulation of monocyte differentiation|up-regulation of monocyte differentiation|up regulation of monocyte differentiation biological_process owl:Class GO:0070888 biolink:NamedThing E-box binding Binding to an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues. tmpzr1t_l9r_go_relaxed.owl E-box promoter binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. mah 2009-08-28T10:37:01Z molecular_function owl:Class GO:1901024 biolink:NamedThing 4-hydroxyphenylacetate biosynthetic process The chemical reactions and pathways resulting in the formation of 4-hydroxyphenylacetate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylacetate formation|4-hydroxyphenylacetate anabolism|4-hydroxyphenylacetate biosynthesis|4-hydroxyphenylacetate synthesis yaf 2012-06-18T02:32:06Z biological_process owl:Class GO:0035498 biolink:NamedThing carnosine metabolic process The chemical reactions and pathways involving the dipeptide beta-alanyl-L-histidine (carnosine). tmpzr1t_l9r_go_relaxed.owl carnosine metabolism bf 2010-04-29T01:19:52Z biological_process owl:Class GO:1904536 biolink:NamedThing regulation of mitotic telomere tethering at nuclear periphery Any process that modulates the frequency, rate or extent of mitotic telomere tethering at nuclear periphery. tmpzr1t_l9r_go_relaxed.owl al 2015-08-04T14:24:26Z biological_process owl:Class GO:0015313 biolink:NamedThing fluconazole:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + fluconazole(in) = H+(in) + fluconazole(out). tmpzr1t_l9r_go_relaxed.owl fluconazole:hydrogen antiporter activity molecular_function owl:Class GO:0016738 biolink:NamedThing oxidoreductase activity, acting on reduced flavodoxin as donor, dinitrogen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which reduced flavodoxin acts as a hydrogen or electron donor and reduces dinitrogen. tmpzr1t_l9r_go_relaxed.owl EC:1.19.6.- molecular_function owl:Class GO:0071882 biolink:NamedThing phospholipase C-activating adrenergic receptor signaling pathway The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by adrenergic receptor signalling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|adrenergic receptor, phospholipase C activating pathway mah 2010-09-13T04:32:03Z biological_process owl:Class GO:0047473 biolink:NamedThing D-alanine [D-alanyl carrier protein] ligase activity Catalysis of the ATP-dependent activation of D-alanine and its transfer as a thiol ester to the phosphopantheinyl prosthetic group of a D-alanyl carrier protein, according to the reaction: ATP + D-alanine + a [D-alaninyl carrier protein] = a D-alanyl-[D-alanyl carrier protein] + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl D-alanine-D-alanyl carrier protein ligase activity|D-alanine:poly(phosphoribitol) ligase (AMP-forming)|D-alanine-poly(phosphoribitol) ligase activity|D-alanine-activating enzyme activity https://github.com/geneontology/go-ontology/issues/14237 MetaCyc:6.2.1.M5-RXN|EC:6.2.1.- molecular_function owl:Class GO:0031235 biolink:NamedThing intrinsic component of the cytoplasmic side of the plasma membrane The component of a plasma membrane consisting of gene products and protein complexes that have some covalently attached part (e.g. peptide sequence or GPI anchor) which is embedded in the cytoplasmic side of the plasma membrane only. tmpzr1t_l9r_go_relaxed.owl intrinsic to internal side of plasma membrane|intrinsic to internal leaflet of plasma membrane|intrinsic to cytoplasmic side of plasma membrane cellular_component owl:Class GO:0106340 biolink:NamedThing tRNA (guanosine 32-2'-O)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine 32 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylguanosine 32 in tRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2020-11-05T22:52:49Z molecular_function owl:Class GO:1901166 biolink:NamedThing neural crest cell migration involved in autonomic nervous system development Any neural crest cell migration that is involved in autonomic nervous system development. tmpzr1t_l9r_go_relaxed.owl vk 2012-07-19T08:39:56Z biological_process owl:Class GO:1901961 biolink:NamedThing isobutanol biosynthetic process The chemical reactions and pathways resulting in the formation of isobutanol. tmpzr1t_l9r_go_relaxed.owl isobutanol anabolism|isobutanol biosynthesis|isobutanol synthesis|isobutanol formation tt 2013-02-19T21:49:49Z biological_process owl:Class GO:0019540 biolink:NamedThing catechol-containing siderophore biosynthetic process The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including catechol. Catechol is one of the three major chemical groups incorporated into siderophore structures with hydroxamate and a-hydroxycarboxylate, each having a high selectivity for iron(3+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20975 GO:0031190|GO:0031189 biological_process owl:Class GO:0036324 biolink:NamedThing vascular endothelial growth factor receptor-2 signaling pathway Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor-2 (VEGFR-2) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl FLK-1 signaling pathway|VEGFR-2 signaling pathway|KDR signaling pathway|VEGFR2 signaling pathway bf 2012-09-04T15:15:40Z biological_process owl:Class GO:0015654 biolink:NamedThing tellurite transmembrane transporter activity Enables the transfer of tellurite from one side of a membrane to the other. Tellurite is a salt of tellurous acid or an oxide of tellurium which occurs sparingly in tufts of white or yellowish crystals. tmpzr1t_l9r_go_relaxed.owl tellurite-resistance uptake permease activity|tellurite-resistance uptake transmembrane transporter activity|tellurite uptake transmembrane transporter activity GO:0015118 molecular_function owl:Class GO:0002263 biolink:NamedThing cell activation involved in immune response A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl cell activation during immune response biological_process owl:Class GO:0009695 biolink:NamedThing jasmonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative. tmpzr1t_l9r_go_relaxed.owl jasmonic acid synthesis|jasmonic acid formation|jasmonic acid anabolism|jasmonic acid biosynthesis MetaCyc:PWY-735 biological_process owl:Class GO:0018785 biolink:NamedThing haloacetate dehalogenase activity Catalysis of the reaction: haloacetate + H2O = glycolate + halide. tmpzr1t_l9r_go_relaxed.owl haloacetate halidohydrolase activity|monohaloacetate dehalogenase activity MetaCyc:HALOACETATE-DEHALOGENASE-RXN|EC:3.8.1.3|RHEA:11044|UM-BBD_enzymeID:e0006 molecular_function owl:Class GO:2000088 biolink:NamedThing negative regulation of mesonephric glomerulus development Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric glomerulus development. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-03T06:09:22Z biological_process owl:Class GO:0102608 biolink:NamedThing tetracenomycin B3 8-O-methyl transferase activity Catalysis of the reaction: tetracenomycin B3 + S-adenosyl-L-methionine <=> tetracenomycin E + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15435 molecular_function owl:Class GO:0098714 biolink:NamedThing malate import across plasma membrane The directed movement of malate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl malate import into cell pr 2012-10-29T11:18:48Z GO:0097405 biological_process owl:Class GO:0004416 biolink:NamedThing hydroxyacylglutathione hydrolase activity Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate. tmpzr1t_l9r_go_relaxed.owl S-2-hydroxylacylglutathione hydrolase activity|acetoacetylglutathione hydrolase activity|S-(2-hydroxyacyl)glutathione hydrolase activity|glyoxalase II activity Reactome:R-HSA-6783221|RHEA:25245|MetaCyc:GLYOXII-RXN|EC:3.1.2.6 molecular_function owl:Class GO:1903589 biolink:NamedThing positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis Any process that activates or increases the frequency, rate or extent of blood vessel endothelial cell proliferation involved in sprouting angiogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|positive regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|upregulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|activation of blood vessel endothelial cell proliferation during sprouting angiogenesis|upregulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|up-regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|up regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis|up regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis|activation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis pga 2014-11-04T11:39:47Z biological_process owl:Class GO:1901693 biolink:NamedThing negative regulation of compound eye retinal cell apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of compound eye retinal cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl downregulation of compound eye retinal cell apoptotic process|down-regulation of compound eye retinal cell apoptotic process|inhibition of compound eye retinal cell apoptotic process|down regulation of compound eye retinal cell apoptotic process pr 2012-12-12T10:28:40Z biological_process owl:Class GO:0052112 biolink:NamedThing occlusion by symbiont of host xylem The process in which an organism reduces the flow of fluid within the host xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052110 biolink:NamedThing occlusion by symbiont of host vascular system The process in which an organism reduces the flow of fluid within its host's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002194 biolink:NamedThing hepatocyte cell migration The orderly movement of a hepatocyte during the development of the liver. Hepatocytes emerge from the hepatic epithelium, populating the septum transversum and lateral mesenchymal areas of the hepatic lobes. tmpzr1t_l9r_go_relaxed.owl hjd 2011-08-30T04:27:39Z biological_process owl:Class GO:0032407 biolink:NamedThing MutSalpha complex binding Binding to a MutSalpha mismatch repair complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062055 biolink:NamedThing photosynthetic state transition A regulation of the phtosynthetic light reaction in which the light harvesting antenna complexes transition between photosystems. tmpzr1t_l9r_go_relaxed.owl dph 2018-07-16T14:00:57Z biological_process owl:Class GO:1905285 biolink:NamedThing fibrous ring of heart morphogenesis The developmental process by which a fibrous ring of heart is generated and organized. tmpzr1t_l9r_go_relaxed.owl annulus fibrosus cordis morphogenesis|anulus fibrosus cordis morphogenesis|coronary tendon morphogenesis|anulus fibrosus of heart morphogenesis|Lower's ring morphogenesis|aortic annulus morphogenesis|atrioventricular ring morphogenesis rl 2016-06-21T09:46:54Z biological_process owl:Class GO:0016496 biolink:NamedThing substance P receptor activity Combining with substance P, the peptide Arg-Pro-Lys-Pro-Gln-Gln-Phe-Phe-Gly-Leu-Met, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043760 biolink:NamedThing acetyldiaminopimelate aminotransferase activity Catalysis of the reaction: N-acetyl-L-2,6-diaminoheptanedioate + 2-oxoglutarate = N-acetyl-2-L-amino-6-oxoheptanedioate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl N-acetyl-diaminopimelate aminotransferase activity|N-acetyl-L,L-diaminopimelate aminotransferase activity molecular_function owl:Class GO:0019330 biolink:NamedThing aldoxime metabolic process The chemical reactions and pathways involving aldoximes, compounds derived by the reaction of an aldose with hydroxylamine, thus containing the aldoxime group -HC=NOH. tmpzr1t_l9r_go_relaxed.owl aldoxime metabolism MetaCyc:P345-PWY biological_process owl:Class GO:0030759 biolink:NamedThing methylquercetagetin 6-O-methyltransferase activity Catalysis of the reaction: 3',4',5,6-tetrahydroxy-3,7-dimethoxyflavone + S-adenosyl-L-methionine(1+) = 3',4',5-trihydroxy-3,6,7-trimethoxyflavone + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:3',4',5,6-tetrahydroxy-3,7-dimethoxyflavone 6-O-methyltransferase activity|flavonol 6-O-methyltransferase activity|6-OMT|flavonol 6-methyltransferase activity KEGG_REACTION:R04505|EC:2.1.1.84|MetaCyc:2.1.1.84-RXN|RHEA:18717 molecular_function owl:Class GO:0047502 biolink:NamedThing (+)-sabinol dehydrogenase activity Catalysis of the reaction: (+)-cis-sabinol + NAD(+) = (1S,5S)-sabinone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (+)-cis-sabinol:NAD+ oxidoreductase activity|(+)-cis-sabinol dehydrogenase activity MetaCyc:+-SABINOL-DEHYDROGENASE-RXN|RHEA:18329|KEGG_REACTION:R03745|EC:1.1.1.228 molecular_function owl:Class GO:0046276 biolink:NamedThing methylgallate catabolic process The chemical reactions and pathways resulting in the breakdown of methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid. tmpzr1t_l9r_go_relaxed.owl methylgallate breakdown|methylgallate degradation|methylgallate catabolism MetaCyc:METHYLGALLATE-DEGRADATION-PWY biological_process owl:Class GO:0018412 biolink:NamedThing protein O-glucuronidation The modification of a protein by glucuronidation on an amino acid oxygen atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid O-glucuronidation biological_process owl:Class GO:0019515 biolink:NamedThing lactose catabolic process via UDP-galactose The chemical reactions and pathways resulting in the breakdown of lactose, via the intermediate UDP-galactose. tmpzr1t_l9r_go_relaxed.owl lactose degradation via UDP-galactose|lactose breakdown via UDP-galactose biological_process owl:Class GO:0035794 biolink:NamedThing positive regulation of mitochondrial membrane permeability Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane. tmpzr1t_l9r_go_relaxed.owl MPT|mitochondrial permeability transition|mitochondrial membrane permeabilization|mitochondrial membrane permeability transition|positive regulation of transport across mitochondrial membrane bf 2011-04-11T01:44:06Z biological_process owl:Class GO:0003109 biolink:NamedThing positive regulation of the force of heart contraction by circulating norepinephrine The process in which the secretion of norepinephrine into the bloodstream modulates the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl increased force of heart contraction by circulating noradrenaline|increased force of heart contraction by circulating norepinephrine biological_process owl:Class GO:1904494 biolink:NamedThing regulation of substance P secretion, neurotransmission Any process that modulates the frequency, rate or extent of substance P secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-21T19:09:04Z biological_process owl:Class GO:0080002 biolink:NamedThing UDP-glucose:4-aminobenzoate acylglucosyltransferase activity Catalysis of the reaction: 4-aminobenzoate + UDP-glucose = p-aminobenzoate-beta-D-glucopyranosyl ester + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:p-aminobenzoate glucosyltransferase activity|UDP-glucose:p-aminobenzoate acylglucosyltransferase activity|UDP-glucose:pABA acylglucosyltransferase activity MetaCyc:RXN-6142 molecular_function owl:Class GO:0014820 biolink:NamedThing tonic smooth muscle contraction A process in which force is generated within tonic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the tonic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Tonic smooth muscle contraction occurs as a sustained continuous contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050889 biolink:NamedThing determination of stimulus intensity The determination of the perceived strength of a sensory stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000025 biolink:NamedThing maltose catabolic process The chemical reactions and pathways resulting in the breakdown of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose). tmpzr1t_l9r_go_relaxed.owl maltose breakdown|maltose degradation|malt sugar catabolism|malt sugar catabolic process|maltose hydrolysis MetaCyc:MALTOSECAT-PWY biological_process owl:Class GO:1902131 biolink:NamedThing (+)-lariciresinol catabolic process The chemical reactions and pathways resulting in the breakdown of (+)-lariciresinol. tmpzr1t_l9r_go_relaxed.owl (+)-lariciresinol catabolism|(+)-lariciresinol breakdown|(+)-lariciresinol degradation ms 2013-05-21T08:49:54Z biological_process owl:Class GO:0015863 biolink:NamedThing xanthosine transport The directed movement of xanthosine, xanthine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033169 biolink:NamedThing histone H3-K9 demethylation The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003939 biolink:NamedThing L-iditol 2-dehydrogenase activity Catalysis of the reaction: L-iditol + NAD+ = L-sorbose + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD-sorbitol dehydrogenase|L-iditol:NAD oxidoreductase activity|polyol dehydrogenase activity|sorbitol dehydrogenase activity|glucitol dehydrogenase activity|NAD-dependent sorbitol dehydrogenase activity|L-iditol (sorbitol) dehydrogenase activity|L-iditol:NAD+ 5-oxidoreductase activity|NAD+-dependent sorbitol dehydrogenase activity EC:1.1.1.14|Reactome:R-HSA-5652195|RHEA:10160|MetaCyc:L-IDITOL-2-DEHYDROGENASE-RXN Note that enzymes with this activity also act on D-glucitol (giving D-fructose) and other closely related sugar alcohols. molecular_function owl:Class GO:0036399 biolink:NamedThing TCR signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a TCR signalosome. tmpzr1t_l9r_go_relaxed.owl LAT signalosome assembly|linker for activation of T cells signalosome assembly bf 2013-07-18T14:02:53Z biological_process owl:Class GO:0018721 biolink:NamedThing trans-9R,10R-dihydrodiolphenanthrene sulfotransferase activity Catalysis of the reaction: trans-9R,10R-dihydrodiolphenanthrene + 2 X-SO3(-) = 2 HX + phenanthrene-9,10-dihydrodiolsulfate conjugate. tmpzr1t_l9r_go_relaxed.owl trans-9R,10R-dihydrodiolphenanthrene sulphotransferase activity UM-BBD_reactionID:r0559 molecular_function owl:Class GO:0098996 biolink:NamedThing disruption of host cell glycocalyx during viral entry The disruption of host cell glycocalyx by viral proteins during virus entry. tmpzr1t_l9r_go_relaxed.owl disassembly of glycocalyx during viral entry|catabolism of host glycocalyx during viral entry|degradation of host capsule during virus entry|degradation of host glycocalyx during viral entry VZ:3938 biological_process owl:Class GO:0019618 biolink:NamedThing protocatechuate catabolic process, ortho-cleavage The chemical reactions and pathways resulting in the breakdown of protocatechuate, the anion of 3,4-dihydroxybenzoic acid, to yield beta-ketoadipate. tmpzr1t_l9r_go_relaxed.owl protocatechuate catabolic process to beta-ketoadipate|protocatechuate breakdown, ortho-cleavage|protocatechuate degradation, ortho-cleavage|3,4-dihydroxybenzoate catabolic process, ortho-cleavage MetaCyc:PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY biological_process owl:Class GO:0047614 biolink:NamedThing aconitate delta-isomerase activity Catalysis of the reaction: trans-aconitate = cis-aconitate. tmpzr1t_l9r_go_relaxed.owl aconitate delta2-delta3-isomerase activity|aconitate isomerase activity|aconitate D-isomerase activity EC:5.3.3.7|KEGG_REACTION:R02244|MetaCyc:ACONITATE-DELTA-ISOMERASE-RXN|RHEA:17265 molecular_function owl:Class GO:0036088 biolink:NamedThing D-serine catabolic process The chemical reactions and pathways resulting in the breakdown of D-serine, the D-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-serine degradation|D-serine breakdown|D-serine catabolism bf 2012-01-06T10:58:51Z biological_process owl:Class GO:0001223 biolink:NamedThing transcription coactivator binding Binding to a transcription coactivator, a protein involved in positive regulation of transcription via protein-protein interactions with transcription factors and other proteins that positively regulate transcription. Transcription coactivators do not bind DNA directly, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription coactivator binding https://github.com/geneontology/go-ontology/issues/19354 krc 2012-04-16T03:30:16Z GO:0001225 molecular_function owl:Class GO:0015670 biolink:NamedThing carbon dioxide transport The directed movement of carbon dioxide (CO2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035850 biolink:NamedThing epithelial cell differentiation involved in kidney development The process in which relatively unspecialized cells acquire specialized structural and/or functional features of an epithelial cell that characterize the cells of the kidney as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-11T11:34:21Z biological_process owl:Class GO:0047732 biolink:NamedThing CDP-abequose epimerase activity Catalysis of the reaction: CDP-3,6-dideoxy-D-glucose = CDP-3,6-dideoxy-D-mannose. tmpzr1t_l9r_go_relaxed.owl cytidine diphosphoparatose epimerase activity|cytidine diphosphoabequose epimerase activity|CDP-tyvelose 2-epimerase activity|cytidine diphosphate paratose-2-epimerase activity|cytidine diphosphodideoxyglucose epimerase activity|CDP-paratose epimerase activity|CDP-D-abequose 2-epimerase activity|CDP-3,6-dideoxy-D-glucose 2-epimerase activity|CDP-paratose 2-epimerase activity RHEA:21656|EC:5.1.3.10|MetaCyc:RXN-9160|KEGG_REACTION:R04266 molecular_function owl:Class GO:0001540 biolink:NamedThing amyloid-beta binding Binding to an amyloid-beta peptide/protein. tmpzr1t_l9r_go_relaxed.owl beta-amyloid binding https://github.com/geneontology/go-ontology/issues/20109 molecular_function owl:Class GO:0015123 biolink:NamedThing acetate transmembrane transporter activity Enables the transfer of acetate from one side of a membrane to the other. Acetate is the 2-carbon carboxylic acid ethanoic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060800 biolink:NamedThing regulation of cell differentiation involved in embryonic placenta development Any process that modulates the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-06T01:20:25Z biological_process owl:Class GO:0061606 biolink:NamedThing N-terminal protein amino acid propionylation The propionylation of the N-terminal amino acid of proteins. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-11T14:13:05Z biological_process owl:Class GO:0140713 biolink:NamedThing histone chaperone activity Binding to and carrying a histone or a histone complex until it is deposited on DNA, or degraded. tmpzr1t_l9r_go_relaxed.owl histone carrier activity https://github.com/geneontology/go-ontology/issues/22126 pg 2021-09-10T15:22:31Z molecular_function owl:Class GO:1903179 biolink:NamedThing regulation of dopamine biosynthetic process Any process that modulates the frequency, rate or extent of dopamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of dopamine synthesis|regulation of dopamine formation|regulation of dopamine biosynthesis|regulation of dopamine anabolism bf 2014-07-14T12:17:41Z biological_process owl:Class GO:0042053 biolink:NamedThing regulation of dopamine metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dopamine. tmpzr1t_l9r_go_relaxed.owl regulation of dopamine metabolism biological_process owl:Class GO:0008307 biolink:NamedThing structural constituent of muscle The action of a molecule that contributes to the structural integrity of a muscle fiber. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120133 biolink:NamedThing negative regulation of actin cortical patch assembly Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of actin cortical patches. tmpzr1t_l9r_go_relaxed.owl downregulation of actin cortical patch assembly|down regulation of actin cortical patch assembly|down-regulation of actin cortical patch assembly|inhibition of actin cortical patch assembly krc 2018-02-20T16:23:53Z biological_process owl:Class GO:0010231 biolink:NamedThing maintenance of seed dormancy Any process that maintains a seed in a dormant state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097437 biolink:NamedThing maintenance of dormancy The dormancy process that results in an organism remaining in dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-05T15:00:24Z biological_process owl:Class GO:0008753 biolink:NamedThing NADPH dehydrogenase (quinone) activity Catalysis of the reaction: NADPH + H+ + a quinone = NADP+ + a quinol. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide phosphate (quinone) dehydrogenase|NADPH oxidase|NADPH:(quinone-acceptor) oxidoreductase RHEA:46164|KEGG_REACTION:R07359|EC:1.6.5.10|MetaCyc:NADPH-DEHYDROGENASE-QUINONE-RXN molecular_function owl:Class GO:0097523 biolink:NamedThing transcription ternary complex A protein-DNA-RNA complex composed of RNA polymerase, template DNA, and an RNA transcript. tmpzr1t_l9r_go_relaxed.owl transcription protein-DNA-RNA complex pr 2013-10-18T11:29:57Z cellular_component owl:Class GO:0001114 biolink:NamedThing protein-DNA-RNA complex A macromolecular complex containing protein, DNA, and RNA molecules. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-03T02:09:38Z cellular_component owl:Class GO:0072374 biolink:NamedThing carotene epsilon hydroxylase activity Catalysis of the reaction: a carotene + NADPH + O2 + H+ = a beta-ring hydroxylcarotene + NADP+ + H2O. Adds a hydroxyl group to the epsilon ring of the alpha-carotene. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-19T03:57:55Z molecular_function owl:Class GO:0042729 biolink:NamedThing DASH complex A large protein complex, containing around 8-10 subunits in yeast, including Duo1p, Dam1p, Dad1p and Ask1p. The complex forms part of the outer kinetochore, associates with microtubules when the kinetochore attaches to the spindle, and plays a role in spindle attachment, chromosome segregation and spindle stability. tmpzr1t_l9r_go_relaxed.owl Duo1p-Dam1p-Dad1p complex|Dam1 complex|condensed nuclear chromosome kinetochore-associated DASH complex|DDD complex https://github.com/geneontology/go-ontology/issues/21126 Note that this complex is conserved in fungi but has not been observed in metazoans. GO:0043925|GO:0043926 cellular_component owl:Class GO:0007038 biolink:NamedThing endocytosed protein transport to vacuole The directed movement of proteins imported into a cell by endocytosis to the vacuole. tmpzr1t_l9r_go_relaxed.owl delivery of endocytosed proteins to the vacuole See also the biological process term 'endocytosis ; GO:0006897'. biological_process owl:Class GO:0010313 biolink:NamedThing phytochrome binding Binding to a phytochrome. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032795 biolink:NamedThing heterotrimeric G-protein binding Binding to a heterotrimeric G-protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043751 biolink:NamedThing polyphosphate:AMP phosphotransferase activity Catalysis of the reaction: (polyphosphate)n + AMP = (polyphosphate)n-1 + ADP. tmpzr1t_l9r_go_relaxed.owl PAP|PPT molecular_function owl:Class GO:0019974 biolink:NamedThing interleukin-14 binding Binding to interleukin-14. tmpzr1t_l9r_go_relaxed.owl IL-14 binding molecular_function owl:Class GO:1903180 biolink:NamedThing negative regulation of dopamine biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of dopamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of dopamine anabolism|inhibition of dopamine formation|down regulation of dopamine formation|downregulation of dopamine biosynthetic process|down-regulation of dopamine biosynthesis|downregulation of dopamine anabolism|down regulation of dopamine anabolism|negative regulation of dopamine biosynthesis|down regulation of dopamine biosynthetic process|negative regulation of dopamine formation|negative regulation of dopamine anabolism|down regulation of dopamine synthesis|down-regulation of dopamine synthesis|inhibition of dopamine biosynthetic process|down regulation of dopamine biosynthesis|downregulation of dopamine biosynthesis|down-regulation of dopamine biosynthetic process|downregulation of dopamine synthesis|down-regulation of dopamine formation|inhibition of dopamine anabolism|inhibition of dopamine synthesis|downregulation of dopamine formation|inhibition of dopamine biosynthesis|negative regulation of dopamine synthesis bf 2014-07-14T12:17:47Z biological_process owl:Class GO:1904646 biolink:NamedThing cellular response to amyloid-beta Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a amyloid-beta stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to beta-amyloids|cellular response to beta-amyloid sl 2015-08-31T20:44:49Z biological_process owl:Class GO:0018177 biolink:NamedThing protein uridylylation The addition of phospho-uridine to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid uridylylation biological_process owl:Class GO:0031266 biolink:NamedThing TRAIL death-inducing signaling complex A protein complex formed upon binding of TRAIL to its ligand. The complex includes FADD/Mort1 and procaspase-8 addition to the ligand-bound receptor. tmpzr1t_l9r_go_relaxed.owl TRAIL death-inducing signalling complex|TRAIL DISC cellular_component owl:Class GO:0070354 biolink:NamedThing GATA2-TAL1-TCF3-Lmo2 complex A protein complex that contains the zinc finger transcription factor GATA2, the LIM domain protein Lmo2 (RBTN2), the basic helix-loop-helix protein TAL1 and its binding partner TCF3. The complex is involved transcriptional regulation in hematopoiesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904880 biolink:NamedThing response to hydrogen sulfide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen sulfide stimulus. tmpzr1t_l9r_go_relaxed.owl response to sulfane|response to dihydridosulfur sl 2016-01-04T23:56:27Z biological_process owl:Class GO:0035505 biolink:NamedThing positive regulation of myosin light chain kinase activity Any process that activates or increases the frequency, rate or extent of myosin light chain kinase activity. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T10:48:09Z biological_process owl:Class GO:0072390 biolink:NamedThing phenol metabolic process The chemical reactions and pathways involving phenol, a compound that consists of a benzene ring with one attached hydroxyl group. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-06T04:05:51Z biological_process owl:Class GO:0001995 biolink:NamedThing norepinephrine-epinephrine catabolic process in blood stream The chemical reactions and pathways resulting in the breakdown of norepinephrine or epinephrine in the bloodstream. tmpzr1t_l9r_go_relaxed.owl noradrenaline-adrenalin catabolic process in blood stream biological_process owl:Class GO:0102540 biolink:NamedThing D-mannose 6-phosphate 1-epimerase activity Catalysis of the reaction: alpha-D-mannose 6-phosphate = beta-D-mannose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14815 molecular_function owl:Class GO:0003222 biolink:NamedThing ventricular trabecula myocardium morphogenesis The process in which the anatomical structures of the trabecular cardiac ventricle muscle are generated and organized. tmpzr1t_l9r_go_relaxed.owl trabecula carnea morphogenesis dph 2009-10-13T10:33:00Z biological_process owl:Class GO:0050510 biolink:NamedThing N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity Catalysis of the reaction: N-acetyl-beta-D-galactosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP-alpha-D-glucuronate = beta-D-glucuronosyl-(1,3)-N-acetyl-beta-D-galactosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl alpha-D-glucuronate:N-acetyl-beta-D-galactosaminyl-(1->4)-beta-D-glucuronosyl-proteoglycan 3-beta-glucuronosyltransferase activity|N-acetylgalactosaminyl-proteoglycan 3-b-glucuronosyltransferase activity|chondroitin glucuronyltransferase II activity Reactome:R-HSA-3595178|MetaCyc:2.4.1.226-RXN|Reactome:R-HSA-9632034|Reactome:R-HSA-1971491|EC:2.4.1.226 molecular_function owl:Class GO:0071565 biolink:NamedThing nBAF complex A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T03:41:19Z cellular_component owl:Class GO:0033592 biolink:NamedThing RNA strand annealing activity An activity that facilitates the formation of a complementary double-stranded RNA molecule. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/2161 molecular_function owl:Class GO:0030023 biolink:NamedThing extracellular matrix constituent conferring elasticity A component of the extracellular matrix that enables the matrix to recoil after transient stretching. tmpzr1t_l9r_go_relaxed.owl core extracellular matrix|elastin|core matrisome Extracellular matrix elastin proteins may be annotated to this term. PMID:27009176, PMID:24443019 molecular_function owl:Class GO:0090704 biolink:NamedThing nicotinate-O-glucosyltransferase activity Catalysis of the reaction: nicotinate + UDP-D-glucose = O-D-glucosylnicotinate + UDP. tmpzr1t_l9r_go_relaxed.owl tb 2016-09-21T12:46:21Z molecular_function owl:Class GO:1904975 biolink:NamedThing response to bleomycin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bleomycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2016-02-18T15:21:23Z biological_process owl:Class GO:1901012 biolink:NamedThing (S)-reticuline biosynthetic process The chemical reactions and pathways resulting in the formation of (S)-reticuline. tmpzr1t_l9r_go_relaxed.owl (S)-reticuline biosynthesis|(S)-reticuline anabolism|(S)-reticuline formation|(S)-reticuline synthesis yaf 2012-06-15T10:46:52Z biological_process owl:Class GO:0009708 biolink:NamedThing benzyl isoquinoline alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of benzyl isoquinoline alkaloids, compounds with bicyclic N-containing aromatic rings. tmpzr1t_l9r_go_relaxed.owl benzyl isoquinoline alkaloid formation|benzyl isoquinoline alkaloid anabolism|benzyl isoquinoline alkaloid biosynthesis|benzyl isoquinoline alkaloid synthesis biological_process owl:Class GO:0045030 biolink:NamedThing G protein-coupled UTP receptor activity Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UTP. tmpzr1t_l9r_go_relaxed.owl uridine nucleotide receptor activity|UTP-activated nucleotide receptor activity|purinoceptor type U GO:0015065 molecular_function owl:Class GO:0008922 biolink:NamedThing long-chain fatty acid [acyl-carrier-protein] ligase activity Catalysis of the reaction: ATP + an acid + [acyl-carrier protein] = AMP + diphosphate + acyl-[acyl-carrier protein]. A long-chain fatty acid is fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl acyl-[acyl-carrier-protein] synthetase activity|acyl-acyl-carrier-proteinsynthetase activity|long-chain-fatty-acid-ACP ligase activity|long-chain-fatty-acid:acyl-carrier-protein ligase (AMP-forming) activity|stearoyl-ACP synthetase activity|acyl-acyl carrier protein synthetase|long-chain fatty acid-[acyl-carrier-protein] ligase activity|acyl-ACP synthetase activity|long-chain-fatty-acid-[acyl-carrier protein] ligase activity|long-chain-fatty-acid-[acyl-carrier-protein] ligase activity|acyl-acyl-carrier-protein synthetase activity|long-chain-fatty-acid-acyl-carrier-protein ligase activity MetaCyc:ACYLACPSYNTH-RXN|EC:6.2.1.20|RHEA:45588|KEGG_REACTION:R07325 GO:0010300 molecular_function owl:Class GO:0055016 biolink:NamedThing hypochord development The process whose specific outcome is the progression of the hypochord over time, from its formation to the mature structure. The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta. tmpzr1t_l9r_go_relaxed.owl subnotochordal rod development biological_process owl:Class GO:0032465 biolink:NamedThing regulation of cytokinesis Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells. tmpzr1t_l9r_go_relaxed.owl regulation of cell cycle cytokinesis GO:0071775 biological_process owl:Class GO:0047864 biolink:NamedThing dimethylaniline-N-oxide aldolase activity Catalysis of the reaction: N,N-dimethylaniline N-oxide = N-methylaniline + formaldehyde. tmpzr1t_l9r_go_relaxed.owl N,N-dimethylaniline-N-oxide formaldehyde-lyase (N-methylaniline-forming)|N,N-dimethylaniline-N-oxide formaldehyde-lyase activity|microsomal N-oxide dealkylase activity|microsomal oxidase II KEGG_REACTION:R03345|EC:4.1.2.24|RHEA:19321|MetaCyc:DIMETHYLANILINE-N-OXIDE-ALDOLASE-RXN molecular_function owl:Class GO:0031857 biolink:NamedThing type 1 parathyroid hormone receptor binding Binding to a type 1 parathyroid hormone receptor. tmpzr1t_l9r_go_relaxed.owl type 1 parathyroid hormone receptor ligand molecular_function owl:Class GO:0006843 biolink:NamedThing mitochondrial citrate transmembrane transport The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into or out of a mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl mitochondrial citrate transport vw 2014-11-19T11:08:45Z GO:1990541 biological_process owl:Class GO:0019894 biolink:NamedThing kinesin binding Interacting selectively and non-covalently and stoichiometrically with kinesin, a member of a superfamily of microtubule-based motor proteins that perform force-generating tasks such as organelle transport and chromosome segregation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102033 biolink:NamedThing long-chain fatty acid omega-hydroxylase activity Catalysis of the reaction: an omega-methyl-long-chain fatty acid + O2 + reduced [NADPH--hemoprotein reductase] = an omega-hydroxy-long-chain fatty acid + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 fatty acid omega-hydroxylase activity https://github.com/geneontology/go-ontology/issues/19899|https://github.com/geneontology/go-ontology/issues/14194 MetaCyc:RXN-16394|EC:1.14.14.80|RHEA:56748 molecular_function owl:Class GO:0019112 biolink:NamedThing phenanthrol glycosyltransferase activity Catalysis of the reaction: phenanthrol + glucose = phenanthryl-beta-D-glucopyranoside + H2O. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033465 biolink:NamedThing cis-zeatin biosynthetic process The chemical reactions and pathways resulting in the formation of cis-zeatin, (2Z)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl cis-zeatin formation|cis-zeatin biosynthesis|cis-zeatin synthesis|cis-zeatin anabolism MetaCyc:PWY-2781 biological_process owl:Class GO:0090432 biolink:NamedThing myristoyl-CoA ligase activity Catalysis of the reaction: ATP + myristic acid + CoA = AMP + diphosphate + myristoyl-CoA. tmpzr1t_l9r_go_relaxed.owl myristoyl-CoA synthetase activity tb 2012-07-25T03:31:31Z molecular_function owl:Class GO:0047068 biolink:NamedThing N5,N10-methenyltetrahydromethanopterin hydrogenase activity Catalysis of the reaction: 5,10-methenyl-5,6,7,8-tetrahydromethanopterin + H(2) = 5,10-methylenetetrahydromethanopterin + H(+). tmpzr1t_l9r_go_relaxed.owl 5,10-methenyltetrahydromethanopterin hydrogenase activity|hydrogen:5,10-methenyltetrahydromethanopterin oxidoreductase activity|hydrogen:N5,N10-methenyltetrahydromethanopterin oxidoreductase activity|H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase activity|N5,N10-methylenetetrahydromethanopterin dehydrogenase activity|hydrogen:N(5),N(10)-methenyltetrahydromethanopterin oxidoreductase activity|N(5),N(10)-methenyltetrahydromethanopterin hydrogenase activity|nonmetal hydrogenase activity|H(2)-forming N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase activity|H2-dependent methylene-H4MPT dehydrogenase activity|H(2)-dependent methylene-H(4)MPT dehydrogenase activity KEGG_REACTION:R04455|RHEA:20017|EC:1.12.98.2|MetaCyc:H2-METHYLENE-THMPT-DEHYDRO-RXN GO:0016947 molecular_function owl:Class GO:0046995 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor, with other known acceptors Catalysis of an oxidation-reduction (redox) reaction in which hydrogen reduces a known acceptor other than a cytochrome, an iron-sulfur protein, NAD, NADP, or a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.12.98.- molecular_function owl:Class GO:0090683 biolink:NamedThing GPCR sweet taste receptor activity A G protein-coupled receptor activity that is responsible for the sense of sweet taste. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor sweet taste receptor activity tb 2016-05-20T15:49:18Z molecular_function owl:Class GO:0021773 biolink:NamedThing striatal medium spiny neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a medium spiny neuron residing in the striatum. tmpzr1t_l9r_go_relaxed.owl medium-sized spiny neuron differentiation|striatal MSN differentiation biological_process owl:Class GO:0018800 biolink:NamedThing 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase activity Catalysis of the reaction: 5-oxopent-3-ene-1,2,5-tricarboxylate = 2-oxohept-3-enedioate + CO2. tmpzr1t_l9r_go_relaxed.owl HpaG2|OPET decarboxylase activity|5-carboxymethyl-2-oxo-hex-3-ene-1,6-dioate decarboxylase activity|5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase activity|5-oxopent-3-ene-1,2,5-tricarboxylate carboxy-lyase activity|HpaG-2|5-oxopent-3-ene-1,2,5-tricarboxylate carboxy-lyase (2-oxohept-3-enedioate-forming) MetaCyc:4.1.1.68-RXN|EC:4.1.1.68|RHEA:14397|UM-BBD_reactionID:r0367 molecular_function owl:Class GO:0038009 biolink:NamedThing regulation of signal transduction by receptor internalization Any process that modulates the frequency, rate or extent of signal transduction by the movement of a signaling receptor from the plasma membrane to the inside of the cell. Receptor internalization can have a positive or negative effect on a signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of signaling pathway by receptor endocytosis bf 2011-06-23T03:28:47Z biological_process owl:Class GO:0102665 biolink:NamedThing indole-3-acetyl-glutamate synthetase activity Catalysis of the reaction: indole-3-acetate + L-glutamate + ATP <=> H+ + indole-3-acetyl-glutamate + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2947 molecular_function owl:Class GO:0070697 biolink:NamedThing activin receptor binding Binding to an activin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-04T04:02:13Z molecular_function owl:Class GO:0050585 biolink:NamedThing 4-hydroxymandelate synthase activity Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = 4-hydroxymandelate + CO2. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylpyruvate:oxygen oxidoreductase (decarboxylating)|4-hydroxyphenylpyruvate dioxygenase II activity RHEA:21376|EC:1.13.11.46|MetaCyc:1.13.11.46-RXN molecular_function owl:Class GO:0030685 biolink:NamedThing nucleolar preribosome Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed in the nucleolus during ribosome biogenesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902706 biolink:NamedThing hexose catabolic process to acetate The chemical reactions and pathways resulting in the breakdown of hexose to acetate. tmpzr1t_l9r_go_relaxed.owl hexose breakdown to acetate|hexose catabolism to acetate|acidogenesis|hexose degradation to acetate tb 2014-02-19T18:43:23Z GO:1990286 biological_process owl:Class GO:0070989 biolink:NamedThing oxidative demethylation The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-29T03:33:25Z biological_process owl:Class GO:0009018 biolink:NamedThing sucrose phosphorylase activity Catalysis of the reaction: sucrose + phosphate = D-fructose + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl sucrose glucosyltransferase activity|disaccharide glucosyltransferase activity|sucrose:phosphate alpha-D-glucosyltransferase activity RHEA:24048|EC:2.4.1.7|MetaCyc:SUCROSE-PHOSPHORYLASE-RXN molecular_function owl:Class GO:0000732 biolink:NamedThing strand displacement The rejection of the broken 3' single-strand DNA molecule that formed heteroduplex DNA with its complement in an intact duplex DNA. The Watson-Crick base pairing in the original duplex is restored. The rejected 3' single-strand DNA molecule reanneals with its original complement to reform two intact duplex molecules. tmpzr1t_l9r_go_relaxed.owl displacement loop processing|D-loop processing|displacement loop dissociation|D-loop dissociation biological_process owl:Class GO:0003252 biolink:NamedThing negative regulation of cell proliferation involved in heart valve morphogenesis Any process that decreases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T02:10:39Z biological_process owl:Class GO:0003250 biolink:NamedThing regulation of cell proliferation involved in heart valve morphogenesis Any process that modulates the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T02:03:42Z biological_process owl:Class GO:0032266 biolink:NamedThing phosphatidylinositol-3-phosphate binding Binding to phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position. tmpzr1t_l9r_go_relaxed.owl PtdIns-3-P binding|phosphatidylinositol 3-phosphate binding molecular_function owl:Class GO:0002315 biolink:NamedThing marginal zone B cell differentiation The process in which a B cell in the spleen acquires the specialized features of a marginal zone B cell. Marginal zone B cells are localized in a distinct anatomical region of the spleen that represents the major antigen-filtering and scavenging area (by specialized macrophages resident there). It appears that they are preselected to express a BCR repertoire similar to B-1 B cells, biased toward bacterial cell wall constituents and senescent self-components (such as oxidized LDL). tmpzr1t_l9r_go_relaxed.owl marginal zone B-lymphocyte differentiation|marginal zone B lymphocyte differentiation|marginal zone B-cell differentiation|marginal zone B cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0050247 biolink:NamedThing raucaffricine beta-glucosidase activity Catalysis of the reaction: H(2)O + raucaffricine = D-glucose + vomilenine. tmpzr1t_l9r_go_relaxed.owl raucaffricine b-glucosidase activity|raucaffricine beta-D-glucosidase activity|raucaffricine beta-D-glucohydrolase activity|raucaffricine glucosidase activity MetaCyc:RAUCAFFRICINE-BETA-GLUCOSIDASE-RXN|KEGG_REACTION:R03703|RHEA:14557|EC:3.2.1.125 molecular_function owl:Class GO:0002338 biolink:NamedThing B-1b B cell differentiation The process in which B cells acquire the specialized features of B-1b B cells. B-1b B cells are B-1 cells that do not express CD5. tmpzr1t_l9r_go_relaxed.owl B-1b B cell development|B-1b B-cell differentiation|B-1b B lymphocyte differentiation|B-1b B-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0033626 biolink:NamedThing positive regulation of integrin activation by cell surface receptor linked signal transduction Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell that lead to the increased affinity of an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits, for its extracellular ligands. tmpzr1t_l9r_go_relaxed.owl cell surface receptor linked signal transduction leading to integrin complex activation|cell surface receptor linked signal transduction leading to integrin activation biological_process owl:Class GO:0103047 biolink:NamedThing methyl beta-D-glucoside 6-phosphate glucohydrolase activity Catalysis of the reaction: methyl beta-D-glucoside 6-phosphate + H2O = beta-D-glucose 6-phosphate + methanol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6994|EC:3.2.1.86 molecular_function owl:Class GO:0046948 biolink:NamedThing hydroxylysine catabolic process The chemical reactions and pathways resulting in the breakdown of hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid. tmpzr1t_l9r_go_relaxed.owl hydroxylysine catabolism|hydroxylysine degradation|hydroxylysine breakdown biological_process owl:Class GO:0006551 biolink:NamedThing leucine metabolic process The chemical reactions and pathways involving leucine, 2-amino-4-methylpentanoic acid. tmpzr1t_l9r_go_relaxed.owl leucine metabolism biological_process owl:Class GO:0043508 biolink:NamedThing negative regulation of JUN kinase activity Any process that stops, prevents, or reduces the frequency, rate or extent of JUN kinase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of JNK activity|down regulation of JNK activity|negative regulation of JUNK activity|downregulation of JNK activity|inhibition of JNK activity biological_process owl:Class GO:0046329 biolink:NamedThing negative regulation of JNK cascade Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade. tmpzr1t_l9r_go_relaxed.owl inhibition of JNK cascade|downregulation of JNK cascade|down regulation of JNK cascade|down-regulation of JNK cascade biological_process owl:Class GO:1903865 biolink:NamedThing sigma factor antagonist complex A protein complex which is capable of sigma factor antagonist activity. tmpzr1t_l9r_go_relaxed.owl bhm 2015-02-04T15:39:34Z cellular_component owl:Class GO:0032348 biolink:NamedThing negative regulation of aldosterone biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone. tmpzr1t_l9r_go_relaxed.owl down-regulation of aldosterone biosynthetic process|downregulation of aldosterone biosynthetic process|inhibition of aldosterone biosynthetic process|down regulation of aldosterone biosynthetic process biological_process owl:Class GO:0099585 biolink:NamedThing release of sequestered calcium ion into presynaptic cytosol The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the presynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019399 biolink:NamedThing cyclohexanol oxidation The cyclohexanol metabolic process in which cyclohexanol is converted to adipate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:CYCLOHEXANOL-OXIDATION-PWY biological_process owl:Class GO:0034553 biolink:NamedThing mitochondrial respiratory chain complex II assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex II, in the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035135 biolink:NamedThing post-embryonic anal fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the anal fin are generated and organized. An anal fin is an unpaired medial fin on the ventral aspect near the caudal end of a fish, which provides lateral stability while swimming. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102529 biolink:NamedThing apigenin 7-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + apigenin-7-olate <=> S-adenosyl-L-homocysteine + genkwanin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14661 molecular_function owl:Class GO:0080099 biolink:NamedThing L-methionine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-methionine + 2-oxoglutarate = 4-methylthio-2-oxobutyrate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-methionine:alpha-ketoglutarate aminotransferase activity This reaction falls within the larger set of reactions associated with EC:2.6.1.5 (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.5). dhl 2009-04-23T03:51:20Z molecular_function owl:Class GO:0034856 biolink:NamedThing 2-hydroxyhexa-2,4-dienoate hydratase activity Catalysis of the reaction: (2E,4E)-2-hydroxyhexa-2,4-dienoate + H2O = 4-hydroxy-2-oxohexanoate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.132|UM-BBD_reactionID:r1281|RHEA:32535 molecular_function owl:Class GO:0046387 biolink:NamedThing deoxyribose 1,5-bisphosphate metabolic process The chemical reactions and pathways involving deoxyribose 1,5-bisphosphate, the diphosphorylated sugar 1,5-diphospho-2-deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyribose 1,5-bisphosphate metabolism biological_process owl:Class GO:0031956 biolink:NamedThing medium-chain fatty acid-CoA ligase activity Catalysis of the reaction: ATP + a medium-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a medium-chain fatty acid is any fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl medium-chain fatty-acid-CoA ligase activity|medium-chain fatty acid activation|medium-chain-fatty-acid-CoA ligase activity https://github.com/geneontology/go-ontology/issues/18967 RHEA:48340|EC:6.2.1.2 molecular_function owl:Class GO:0019611 biolink:NamedThing 4-toluenecarboxylate metabolic process The chemical reactions and pathways involving 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule. tmpzr1t_l9r_go_relaxed.owl 4-toluenecarboxylate metabolism|p-toluate metabolism|p-toluate metabolic process biological_process owl:Class GO:0080120 biolink:NamedThing CAAX-box protein maturation A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase. tmpzr1t_l9r_go_relaxed.owl farnesylated protein maturation|CAAX-box protein processing dhl 2009-04-28T03:06:13Z biological_process owl:Class GO:0015824 biolink:NamedThing proline transport The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-proline transport biological_process owl:Class GO:0060748 biolink:NamedThing tertiary branching involved in mammary gland duct morphogenesis The branching process in which the mammary gland ducts form tertiary branches off of the secondary branches as part of diestrus and pregnancy. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T10:44:51Z biological_process owl:Class GO:0018662 biolink:NamedThing phenol 2-monooxygenase activity Catalysis of the reaction: phenol + NADPH + H+ + O2 = catechol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl phenol,NADPH:oxygen oxidoreductase (2-hydroxylating)|phenol hydroxylase activity|phenol o-hydroxylase activity EC:1.14.13.7|UM-BBD_enzymeID:e0208|MetaCyc:PHENOL-2-MONOOXYGENASE-RXN|RHEA:17061 molecular_function owl:Class GO:0018188 biolink:NamedThing peptidyl-proline di-hydroxylation The modification of peptidyl-proline to form trans-2,3-cis-3,4-dihydroxy-L-proline. tmpzr1t_l9r_go_relaxed.owl RESID:AA0282 biological_process owl:Class GO:0045183 biolink:NamedThing translation factor activity, non-nucleic acid binding A translation regulator activity that does not involve binding to nucleic acids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090125 biolink:NamedThing cell-cell adhesion involved in synapse maturation The attachment of the pre-synaptic cell to the post-synaptic cell via adhesion molecules that contributes to synapse maturation. tmpzr1t_l9r_go_relaxed.owl trans-synaptic adhesion tb 2009-12-07T02:43:24Z biological_process owl:Class GO:2001240 biolink:NamedThing negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway in absence of ligand. tmpzr1t_l9r_go_relaxed.owl negative regulation of dependence receptor signaling pathway|negative regulation of extrinsic apoptotic signalling pathway in absence of ligand|negative regulation of extrinsic apoptosis in absence of ligand pr 2011-11-24T01:33:25Z biological_process owl:Class GO:0036196 biolink:NamedThing zymosterol metabolic process The chemical reactions and pathways involving zymosterol, (5alpha-cholesta-8,24-dien-3beta-ol). tmpzr1t_l9r_go_relaxed.owl bf 2012-04-20T10:27:06Z biological_process owl:Class GO:0009930 biolink:NamedThing longitudinal side of cell surface The side of the cell parallel to the zygotic axis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032683 biolink:NamedThing negative regulation of connective tissue growth factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of connective tissue growth factor production. tmpzr1t_l9r_go_relaxed.owl negative regulation of IGFBP8 production|downregulation of connective tissue growth factor production|negative regulation of hypertrophic chondrocyte-specific gene product 24 production|negative regulation of Hcs24 production|down-regulation of connective tissue growth factor production|down regulation of connective tissue growth factor production|inhibition of connective tissue growth factor production|negative regulation of CTGF production|negative regulation of Fisp12 production|negative regulation of connective tissue growth factor biosynthetic process|negative regulation of CCN2 production GO:0045421 biological_process owl:Class GO:0002668 biolink:NamedThing negative regulation of T cell anergy Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell anergy. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-lymphocyte anergy|negative regulation of T-cell anergy|negative regulation of T lymphocyte anergy|inhibition of T cell anergy|down-regulation of T cell anergy|down regulation of T cell anergy|downregulation of T cell anergy biological_process owl:Class GO:0042049 biolink:NamedThing cellular acyl-CoA homeostasis Any process involved in the maintenance of an internal steady state of acyl-CoA within a cell or between a cell and its external environment. tmpzr1t_l9r_go_relaxed.owl cell acyl-CoA homeostasis biological_process owl:Class GO:1901551 biolink:NamedThing negative regulation of endothelial cell development Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell development. tmpzr1t_l9r_go_relaxed.owl downregulation of endothelial cell development|down regulation of endothelial cell development|down-regulation of endothelial cell development|inhibition of endothelial cell development pr 2012-10-30T12:59:54Z biological_process owl:Class GO:1902336 biolink:NamedThing positive regulation of retinal ganglion cell axon guidance Any process that activates or increases the frequency, rate or extent of retinal ganglion cell axon guidance. tmpzr1t_l9r_go_relaxed.owl upregulation of retinal ganglion cell axon guidance|positive regulation of retinal ganglion cell axon pathfinding|upregulation of retinal ganglion cell axon pathfinding|up-regulation of retinal ganglion cell axon guidance|activation of retinal ganglion cell axon guidance|activation of retinal ganglion cell axon pathfinding|up regulation of retinal ganglion cell axon pathfinding|up-regulation of retinal ganglion cell axon pathfinding|up regulation of retinal ganglion cell axon guidance rl 2013-07-29T13:02:25Z biological_process owl:Class GO:0030536 biolink:NamedThing larval feeding behavior Feeding behavior in a larval (immature) organism. tmpzr1t_l9r_go_relaxed.owl larval feeding behaviour See also the biological process term 'feeding behavior ; GO:0007631'. biological_process owl:Class GO:0043220 biolink:NamedThing Schmidt-Lanterman incisure Regions within compact myelin in which the cytoplasmic faces of the enveloping myelin sheath are not tightly juxtaposed, and include cytoplasm from the cell responsible for making the myelin. Schmidt-Lanterman incisures occur in the compact myelin internode, while lateral loops are analogous structures found in the paranodal region adjacent to the nodes of Ranvier. tmpzr1t_l9r_go_relaxed.owl Schmidt-Lanterman cleft NIF_Subcellular:sao254777664 GO:0044287 cellular_component owl:Class GO:0042654 biolink:NamedThing ecdysis-triggering hormone receptor activity Combining with ecdysis-triggering hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl ecdysis-triggering hormone binding|ETH receptor molecular_function owl:Class GO:0106275 biolink:NamedThing NADP+-protein-arginine ADP-ribosyltransferase activity Catalysis of the reaction: NADP+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine. tmpzr1t_l9r_go_relaxed.owl EC:2.4.2.31|RHEA:54884 hjd 2020-07-02T01:39:04Z molecular_function owl:Class GO:0050692 biolink:NamedThing DNA binding domain binding Binding to a protein's DNA binding domain (DBD). tmpzr1t_l9r_go_relaxed.owl DBD binding molecular_function owl:Class GO:0034203 biolink:NamedThing glycolipid translocation The translocation, or flipping, of glycolipid molecules from one monolayer of a membrane bilayer to the opposite monolayer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048371 biolink:NamedThing lateral mesodermal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a lateral mesoderm cell. tmpzr1t_l9r_go_relaxed.owl lateral mesoderm cell differentiation|lateral plate mesoderm cell differentiation|lateral plate mesodermal cell differentiation biological_process owl:Class GO:0003831 biolink:NamedThing beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP + beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminylglycopeptide. tmpzr1t_l9r_go_relaxed.owl glycoprotein 4-beta-galactosyltransferase activity|glycoprotein 4-beta-galactosyl-transferase activity|GalT activity|beta-N-acetyl-beta-(1,4)-galactosyltransferase activity|UDP-galactose:N-acetyl-beta-D-glucosaminylglycopeptide beta-1,4-galactosyltransferase activity|uridine diphosphogalactose-glycoprotein galactosyltransferase activity|UDPgalactose-glycoprotein galactosyltransferase activity|thyroid glycoprotein beta-galactosyltransferase|beta-N-acetyl-beta-1,4-galactosyltransferase activity|glycoprotein beta-galactosyltransferase activity|UDP-galactose--glycoprotein galactosyltransferase activity|UDPgalactose:N-acetyl-beta-D-glucosaminylglycopeptide beta-1,4-galactosyltransferase activity|thyroid galactosyltransferase activity Reactome:R-HSA-9035949|Reactome:R-HSA-3656230|Reactome:R-HSA-2046298|Reactome:R-HSA-2025723|RHEA:22932|Reactome:R-HSA-975919|Reactome:R-HSA-9035950|Reactome:R-HSA-1912352|EC:2.4.1.38|MetaCyc:2.4.1.38-RXN|Reactome:R-HSA-4793956|Reactome:R-HSA-2046265 molecular_function owl:Class GO:0004088 biolink:NamedThing carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: 2 ATP + L-glutamine + CO2 + H2O = 2 ADP + phosphate + glutamate + carbamoyl phosphate. tmpzr1t_l9r_go_relaxed.owl carbamoyl-phosphate synthetase (glutamine-hydrolyzing) activity|glutamine-dependent carbamoyl-phosphate synthase activity|hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity|CPS activity|carbamoyl phosphate synthetase activity|GD-CPSase activity|carbamyl phosphate synthetase (glutamine) activity|carbamoyl phosphate synthase (glutamine-hydrolyzing) activity|glutamine-dependent carbamyl phosphate synthetase activity|carbamoyl-phosphate synthetase (glutamine-hydrolysing) activity|carbamoylphosphate synthetase II activity|carbamoyl-phosphate synthase (glutamine-hydrolysing) activity|carbon-dioxide::L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity EC:6.3.5.5|Reactome:R-HSA-73577|MetaCyc:CARBPSYN-RXN|RHEA:18633 molecular_function owl:Class GO:1904828 biolink:NamedThing positive regulation of hydrogen sulfide biosynthetic process Any process that activates or increases the frequency, rate or extent of hydrogen sulfide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of hydrogen sulphide biosynthesis|upregulation of hydrogen sulfide biosynthesis|up-regulation of hydrogen sulphide biosynthesis|upregulation of hydrogen sulfide anabolism|activation of hydrogen sulfide anabolism|up-regulation of hydrogen sulfide biosynthesis|positive regulation of hydrogen sulfide formation|up regulation of hydrogen sulfide formation|up regulation of hydrogen sulfide biosynthesis|up regulation of hydrogen sulphide biosynthetic process|upregulation of hydrogen sulfide biosynthetic process|up regulation of hydrogen sulfide synthesis|positive regulation of hydrogen sulphide biosynthesis|activation of hydrogen sulfide biosynthesis|up-regulation of hydrogen sulfide synthesis|upregulation of hydrogen sulfide formation|activation of hydrogen sulfide biosynthetic process|activation of hydrogen sulfide synthesis|positive regulation of hydrogen sulfide biosynthesis|up regulation of hydrogen sulfide anabolism|up regulation of hydrogen sulphide biosynthesis|activation of hydrogen sulphide biosynthetic process|up regulation of hydrogen sulfide biosynthetic process|upregulation of hydrogen sulphide biosynthesis|activation of hydrogen sulfide formation|up-regulation of hydrogen sulphide biosynthetic process|upregulation of hydrogen sulfide synthesis|positive regulation of hydrogen sulfide synthesis|up-regulation of hydrogen sulfide biosynthetic process|up-regulation of hydrogen sulfide formation|positive regulation of hydrogen sulfide anabolism|up-regulation of hydrogen sulfide anabolism|upregulation of hydrogen sulphide biosynthetic process|positive regulation of hydrogen sulphide biosynthetic process rph 2015-11-24T10:15:41Z biological_process owl:Class GO:0043180 biolink:NamedThing rhythmic inhibition Any process involved in the generation of rhythmic, synchronous inhibitory synaptic inputs in a neural circuit. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046574 biolink:NamedThing glycuronidase activity Catalysis of the hydrolysis of glucuronosides, yielding free glucuronic acid. tmpzr1t_l9r_go_relaxed.owl glucuronyl hydrolase activity molecular_function owl:Class GO:0018041 biolink:NamedThing C-terminal peptidyl-glycine amidation The formation of a C-terminal peptidyl-glycine acid amide by hydrolysis and oxidation of an interior Gly-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0088 biological_process owl:Class GO:0044629 biolink:NamedThing negative regulation of complement activation, classical pathway in other organism Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the classical pathway, in a different organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-05T01:03:25Z biological_process owl:Class GO:0034572 biolink:NamedThing monodemethylisoproturon dimethylaminedehydrogenase activity Catalysis of the reaction: monodemethylisoproturon + H2O = didemethylisoproturon + formaldehyde + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.5.99.-|UM-BBD_reactionID:r0897 molecular_function owl:Class GO:0001830 biolink:NamedThing trophectodermal cell fate commitment The cell fate commitment of precursor cells that will become trophectoderm cells. tmpzr1t_l9r_go_relaxed.owl trophectoderm cell fate commitment See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19'. biological_process owl:Class GO:0032120 biolink:NamedThing ascospore-type prospore membrane formation The process in which the nascent membrane forms at the meiotic outer plaque and grows until closure occurs and forespores, or prospores, are formed. tmpzr1t_l9r_go_relaxed.owl ascospore-type prospore membrane assembly|FSM assembly|prospore membrane biogenesis|forespore membrane biosynthesis|FSM formation|FSM biosynthesis|forespore membrane formation https://github.com/geneontology/go-ontology/issues/14712 GO:0099097 biological_process owl:Class GO:0045604 biolink:NamedThing regulation of epidermal cell differentiation Any process that modulates the frequency, rate or extent of epidermal cell differentiation. tmpzr1t_l9r_go_relaxed.owl regulation of hypodermal cell differentiation biological_process owl:Class GO:0001533 biolink:NamedThing cornified envelope A type of plasma membrane that has been modified through addition of distinct intracellular and extracellular components, including ceramide, found in cornifying epithelial cells (corneocytes). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071093 biolink:NamedThing alpha5-beta1 integrin-fibronectin-tissue transglutaminase complex A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-FN1-TGM2 complex mah 2009-11-06T04:47:22Z cellular_component owl:Class GO:0102055 biolink:NamedThing 12-hydroxyjasmonate sulfotransferase activity Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + a 12-hydroxyjasmonate <=> adenosine 3',5'-bismonophosphate + a 12-hydroxyjasmonate sulfate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10451|EC:2.8.2.39|RHEA:52728 molecular_function owl:Class GO:0015016 biolink:NamedThing [heparan sulfate]-glucosamine N-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-N-sulfoglucosamine. tmpzr1t_l9r_go_relaxed.owl heparitin sulfotransferase activity|N-heparan sulfate sulfotransferase activity|desulfoheparin sulfotransferase activity|heparan sulfate N-sulfotransferase activity|N-desulfoheparin sulfotransferase activity|3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine N-sulfotransferase activity|heparin-glucosamine N-sulfotransferase activity|3'-phosphoadenylylsulfate:N-desulfoheparin sulfotransferase activity|heparitin N-sulfotransferase activity|glucosaminyl N-deacetylase/N-sulfotransferase activity|3'-phosphoadenylyl-sulfate:N-desulfoheparin N-sulfotransferase activity|3'-phosphoadenylyl-sulfate:heparitin N-sulfotransferase activity|heparan sulfate 2-N-sulfotransferase activity|heparin N-sulfotransferase activity|heparitin N-sulphotransferase activity|heparan sulfate N-deacetylase/N-sulfotransferase activity|PAPS:DSH sulfotransferase activity|heparin N-deacetylase/N-sulfotransferase activity|N-HSST activity|PAPS:N-desulfoheparin sulfotransferase activity|[heparan sulphate]-glucosamine N-sulphotransferase activity|heparin N-deacetylase/N-sulphotransferase activity EC:2.8.2.8|RHEA:21980|Reactome:R-HSA-2022860|MetaCyc:HEPARITIN-SULFOTRANSFERASE-RXN Note that this activity includes EC:2.8.2.12 (deleted from EC). GO:0051910|GO:0015022|GO:0004393 molecular_function owl:Class GO:0009011 biolink:NamedThing starch synthase activity Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). tmpzr1t_l9r_go_relaxed.owl ADP-glucose transglucosylase activity|glycogen synthase activity|ADPG-starch glucosyltransferase activity|adenosine diphosphate glucose-starch glucosyltransferase activity|ADP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity|starch synthetase activity|ADP-glucose--starch glucosyltransferase activity|ADPglucose-starch glucosyltransferase activity|adenosine diphosphoglucose-starch glucosyltransferase activity|starch (bacterial glycogen) synthase activity|ADPglucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity|ADP-glucose starch synthase activity|ADPG starch synthetase activity MetaCyc:GLYCOGENSYN-RXN|EC:2.4.1.21 molecular_function owl:Class GO:0050255 biolink:NamedThing ribitol 2-dehydrogenase activity Catalysis of the reaction: D-ribitol + NAD(+) = D-ribulose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl ribitol:NAD+ 2-oxidoreductase activity|ribitol dehydrogenase B (mutant enzyme with different properties)|ribitol dehydrogenase A (wild type)|adonitol dehydrogenase activity|ribitol dehydrogenase D (mutant enzyme with different properties) RHEA:20053|KEGG_REACTION:R01895|EC:1.1.1.56|MetaCyc:RIBITOL-2-DEHYDROGENASE-RXN molecular_function owl:Class GO:1990481 biolink:NamedThing mRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in an mRNA molecule. tmpzr1t_l9r_go_relaxed.owl mRNA pseudouridylation mcc 2014-09-12T15:13:39Z biological_process owl:Class GO:0016596 biolink:NamedThing thienylcyclohexylpiperidine binding Binding to thienylcyclohexylpiperidine. tmpzr1t_l9r_go_relaxed.owl TCP binding molecular_function owl:Class GO:0015902 biolink:NamedThing carbonyl cyanide m-chlorophenylhydrazone transport The directed movement of carbonyl cyanide m-chlorophenylhydrazone into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbonyl cyanide m-chlorophenylhydrazone is a proton ionophore, commonly used as an uncoupling agent and inhibitor of photosynthesis because of its effects on mitochondrial and chloroplast membranes. tmpzr1t_l9r_go_relaxed.owl CCCP transport biological_process owl:Class GO:0033878 biolink:NamedThing hormone-sensitive lipase activity Catalysis of the reactions: diacylglycerol + H2O = monoacylglycerol + a carboxylate; triacylglycerol + H2O = diacylglycerol + a carboxylate; and monoacylglycerol + H2O = glycerol + a carboxylate. tmpzr1t_l9r_go_relaxed.owl diacylglycerol acylhydrolase activity|HSL MetaCyc:STEROL-ESTERASE-RXN|EC:3.1.1.79|MetaCyc:TRIACYLGLYCEROL-LIPASE-RXN molecular_function owl:Class GO:0033588 biolink:NamedThing elongator holoenzyme complex A heterohexameric protein complex composed two discrete heterotrimeric subcomplexes that is involved in modification of wobble nucleosides in tRNA. tmpzr1t_l9r_go_relaxed.owl Elongator core complex https://github.com/geneontology/go-ontology/issues/22076 Despite its name, this complex is not directly involved in transcriptional elongation (PMID:23165209). GO:0033589 cellular_component owl:Class GO:1903943 biolink:NamedThing regulation of hepatocyte apoptotic process Any process that modulates the frequency, rate or extent of hepatocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of hepatocyte apoptosis sl 2015-02-19T12:54:40Z biological_process owl:Class GO:1905829 biolink:NamedThing negative regulation of prostaglandin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of prostaglandin catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of prostaglandin catabolism|down-regulation of prostaglandin breakdown|downregulation of prostaglandin degradation|inhibition of prostaglandin catabolism|down regulation of prostaglandin catabolic process|inhibition of prostaglandin breakdown|inhibition of prostaglandin degradation|inhibition of prostaglandin catabolic process|down regulation of prostaglandin degradation|downregulation of prostaglandin catabolic process|down regulation of prostaglandin catabolism|down-regulation of prostaglandin catabolism|down regulation of prostaglandin breakdown|downregulation of prostaglandin breakdown|negative regulation of prostaglandin degradation|down-regulation of prostaglandin degradation|downregulation of prostaglandin catabolism|down-regulation of prostaglandin catabolic process|negative regulation of prostaglandin breakdown sl 2017-01-16T21:36:48Z biological_process owl:Class GO:0019387 biolink:NamedThing methanogenesis, from methanol The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including methanol. tmpzr1t_l9r_go_relaxed.owl methane biosynthetic process from methanol|methane biosynthesis from methanol MetaCyc:METHFORM-PWY biological_process owl:Class GO:0075135 biolink:NamedThing suppression by symbiont of host calcium or calmodulin-mediated signal transduction Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host calcium or calmodulin-mediated signal transduction|negative regulation by symbiont of host Ca++ or calmodulin-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "Negative regulation by host of symbiont calcium or calmodulin-mediated signal transduction ; GO:0075105". biological_process owl:Class GO:0075133 biolink:NamedThing modulation by symbiont of host calcium or calmodulin-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host Ca++ or calmodulin-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont calcium or calmodulin-mediated signal transduction ; GO:0075103". biological_process owl:Class GO:0048710 biolink:NamedThing regulation of astrocyte differentiation Any process that modulates the frequency, rate or extent of astrocyte differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047119 biolink:NamedThing 2-methyl-branched-chain-enoyl-CoA reductase activity Catalysis of the reaction: 2-methylbutanoyl-CoA + NAD(+) = 2-methylbut-2-enoyl-CoA + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2-methyl-branched-chain-acyl-CoA:NAD+ 2-oxidoreductase activity MetaCyc:1.3.1.52-RXN|EC:1.3.8.5|KEGG_REACTION:R03169|RHEA:43780 molecular_function owl:Class GO:0072710 biolink:NamedThing response to hydroxyurea Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroxyurea stimulus. tmpzr1t_l9r_go_relaxed.owl response to HU mah 2012-04-11T04:15:42Z biological_process owl:Class GO:0046505 biolink:NamedThing sulfolipid metabolic process The chemical reactions and pathways involving sulfolipids, any compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. tmpzr1t_l9r_go_relaxed.owl sulfolipid metabolism|sulpholipid metabolism|sulpholipid metabolic process biological_process owl:Class GO:0008541 biolink:NamedThing proteasome regulatory particle, lid subcomplex The subcomplex of the proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018673 biolink:NamedThing anthraniloyl-CoA monooxygenase activity Catalysis of the reaction: 2-aminobenzoyl-CoA + 2 NADPH + 2 H+ + O2 = 2-amino-5-oxocyclohex-1-enecarboxyl-CoA + H2O + 2 NADP+. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzoyl-CoA,NAD(P)H:oxygen oxidoreductase (de-aromatizing)|2-aminobenzoyl-CoA monooxygenase/reductase activity|anthraniloyl coenzyme A reductase activity EC:1.14.13.40|UM-BBD_reactionID:r0568|MetaCyc:ANTHRANILOYL-COA-MONOOXYGENASE-RXN molecular_function owl:Class GO:0015753 biolink:NamedThing D-xylose transmembrane transport The process in which D-xylose is transported across a lipid bilayer, from one side of a membrane to the other. D-xylose (the naturally occurring enantiomer is always D-) is a constituent of plant polysaccharides. tmpzr1t_l9r_go_relaxed.owl D-xylose transport biological_process owl:Class GO:0048078 biolink:NamedThing positive regulation of compound eye pigmentation Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in the compound eye. tmpzr1t_l9r_go_relaxed.owl stimulation of eye pigmentation|upregulation of eye pigmentation|positive regulation of eye pigmentation|activation of eye pigmentation|up-regulation of eye pigmentation|up regulation of eye pigmentation biological_process owl:Class GO:0043907 biolink:NamedThing Cys-tRNA(Pro) hydrolase activity Catalysis of the hydrolysis of misacylated Cys-tRNA(Pro). tmpzr1t_l9r_go_relaxed.owl Cys-tRNA(Pro) deacetylase activity|Cys-tRNAPro hydrolase activity EC:3.1.1.- molecular_function owl:Class GO:1990534 biolink:NamedThing thermospermine oxidase activity Catalysis of the reaction: S-methyl-5'-thioadenosine + thermospermine + H+ = S-adenosyl 3-(methylthio)propylamine + spermidine. tmpzr1t_l9r_go_relaxed.owl tb 2014-11-13T00:41:59Z molecular_function owl:Class GO:0046328 biolink:NamedThing regulation of JNK cascade Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade. tmpzr1t_l9r_go_relaxed.owl regulation of SAPK cascade biological_process owl:Class GO:0021530 biolink:NamedThing spinal cord oligodendrocyte cell fate specification The process in which a cell becomes capable of differentiating autonomously into an oligodendrocyte in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036190 biolink:NamedThing indole-2-monooxygenase activity Catalysis of the reaction: indole + NAD(P)H + H+ + O2 = indolin-2-one + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R07403|RHEA:31899|EC:1.14.14.153 bf 2012-04-19T11:24:48Z molecular_function owl:Class GO:0071499 biolink:NamedThing cellular response to laminar fluid shear stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T02:43:02Z biological_process owl:Class GO:0034616 biolink:NamedThing response to laminar fluid shear stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers. As an example, laminar shear stress can be seen where blood flows against the luminal side of blood vessel walls. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090121 biolink:NamedThing low-density lipoprotein particle disassembly involved in cholesterol transport The disassembly into constituent parts of the low-density lipoprotein particle in the lysosome that contributes to cholesterol transport. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T12:59:14Z biological_process owl:Class GO:0061712 biolink:NamedThing tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase Catalysis of the reaction: N(6)-L-threonylcarbamoyladenine(37) in tRNA + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine = 2-methylthio-N(6)-L-threonylcarbamoyladenine(37) in tRNA + S-adenosyl-L-homocysteine + (sulfur carrier) + L-methionine + 5'-deoxyadenosine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14531|RHEA:37075|EC:2.8.4.5 dph 2015-06-23T08:47:10Z molecular_function owl:Class GO:0140573 biolink:NamedThing histone H3-containing nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins containing the histone H3, which forms the primary packing unit of DNA into higher order structures. tmpzr1t_l9r_go_relaxed.owl histone H3 containing nucleosome https://github.com/geneontology/go-ontology/issues/20585 pg 2021-01-04T16:22:43Z cellular_component owl:Class GO:0038197 biolink:NamedThing type I interferon receptor complex A heterodimeric protein complex that binds a type I interferon and transmits the signal across the membrane into the cell. Consists of an alpha subunit (IFNAR1) and a beta subunit (IFNAR2). tmpzr1t_l9r_go_relaxed.owl interferon-alpha/beta receptor complex bf 2013-11-27T14:53:50Z cellular_component owl:Class GO:0070450 biolink:NamedThing interleukin4-interleukin-4 receptor complex A protein complex that is formed by the association of a heterodimeric interleukin-4 receptor complex with an interleukin-4 molecule. tmpzr1t_l9r_go_relaxed.owl IL4-IL4 receptor complex|IL4-IL4R-IL2RG complex cellular_component owl:Class GO:0036275 biolink:NamedThing response to 5-fluorouracil Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 5-fluorouracil stimulus. tmpzr1t_l9r_go_relaxed.owl response to 5-fluoropyrimidine-2,4(1H,3H)-dione|response to fluorouracil Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T02:08:23Z biological_process owl:Class GO:0033435 biolink:NamedThing AUA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AUA codon. tmpzr1t_l9r_go_relaxed.owl ATA codon-amino acid adaptor activity|isoleucine tRNA Note that in the standard genetic code, ATA codes for isoleucine. molecular_function owl:Class GO:0140227 biolink:NamedThing serotonin-gated cation-selective signaling pathway A series of molecular signals initiated by serotonin binding to a seratonin receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl 5-HT-gated cation-selective signalling pathway|5-HT-gated cation-selective signaling pathway|5-hydroxytryptamine-gated cation-selective signalling pathway|5-hydroxytryptamine-gated cation-selective signaling pathway|serotonin-gated cation-selective signalling pathway pg 2018-06-02T13:34:51Z biological_process owl:Class GO:0106362 biolink:NamedThing protein-arginine N-acetylglucosaminyltransferase activity Catalysis of the reaction: L-arginyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = H(+) + N(omega)-(N-acetyl-beta-D-glucosaminyl)-L-arginyl-[protein] + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:66632 hjd 2021-02-05T15:42:52Z molecular_function owl:Class GO:1901827 biolink:NamedThing zeaxanthin biosynthetic process The chemical reactions and pathways resulting in the formation of zeaxanthin. tmpzr1t_l9r_go_relaxed.owl zeaxanthin biosynthesis|zeaxanthin formation|zeaxanthin anabolism|zeaxanthin synthesis yaf 2013-01-22T11:37:07Z biological_process owl:Class GO:0044653 biolink:NamedThing dextrin alpha-glucosidase activity Catalysis of the reaction: dextrin + H2O = alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.- jl 2012-07-23T02:01:12Z molecular_function owl:Class GO:0034978 biolink:NamedThing PDX1-PBX1b-MRG1 complex A protein complex that contains the homeodomain proteins PDX1, PBX1b and MRG1 (MEIS2) and is involved in the transcriptional regulation of pancreatic acinar cell-specific genes. tmpzr1t_l9r_go_relaxed.owl acinar cell-specific C complex cellular_component owl:Class GO:0010086 biolink:NamedThing embryonic root morphogenesis The process in which the anatomical structures of the embryonic root are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902170 biolink:NamedThing cellular response to reactive nitrogen species Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive nitrogen species stimulus. tmpzr1t_l9r_go_relaxed.owl tb 2013-05-23T00:23:59Z GO:1990106 biological_process owl:Class GO:1904855 biolink:NamedThing proteasome regulatory particle binding Binding to a proteasome regulatory particle. tmpzr1t_l9r_go_relaxed.owl PA700-dependent proteasome activator binding|modulator complex binding|19S regulatory particle binding|PA700 proteasome activator binding mah 2015-12-15T11:54:27Z molecular_function owl:Class GO:0071503 biolink:NamedThing response to heparin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T03:33:49Z biological_process owl:Class GO:0043559 biolink:NamedThing insulin binding Binding to insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016254 biolink:NamedThing preassembly of GPI anchor in ER membrane The stepwise addition of the components of the GPI anchor on to phosphatidylinositol lipids in the endoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl preassembly of GPI anchor in endoplasmic reticulum membrane biological_process owl:Class GO:1903191 biolink:NamedThing glyoxal biosynthetic process The chemical reactions and pathways resulting in the formation of glyoxal. tmpzr1t_l9r_go_relaxed.owl glyoxal biosynthesis|glyoxal formation|glyoxal synthesis|glyoxal anabolism bf 2014-07-15T10:11:57Z biological_process owl:Class GO:0008906 biolink:NamedThing inosine kinase activity Catalysis of the reaction: ATP + inosine = ADP + IMP. tmpzr1t_l9r_go_relaxed.owl inosine-guanosine kinase activity|ATP:inosine 5'-phosphotransferase activity|inosine kinase (phosphorylating) RHEA:21140|EC:2.7.1.73|MetaCyc:INOSINEKIN-RXN molecular_function owl:Class GO:0050842 biolink:NamedThing copper incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide The incorporation of copper into a protein by L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0355 biological_process owl:Class GO:0051584 biolink:NamedThing regulation of dopamine uptake involved in synaptic transmission Any process that modulates the frequency, rate or extent of the directed movement of the catecholamine neurotransmitter dopamine into a cell. tmpzr1t_l9r_go_relaxed.owl regulation of dopamine import involved in synaptic transmission biological_process owl:Class GO:1901104 biolink:NamedThing tetracenomycin C metabolic process The chemical reactions and pathways involving tetracenomycin C. tmpzr1t_l9r_go_relaxed.owl tetracenomycin C metabolism yaf 2012-07-11T02:50:32Z biological_process owl:Class GO:0019121 biolink:NamedThing peptidoglycan-protein cross-linking via N6-mureinyl-L-lysine The process of linking a protein to peptidoglycan via the epsilon amino group of lysine to the diaminopimelic acid of the peptidoglycan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0218 biological_process owl:Class GO:2000842 biolink:NamedThing positive regulation of dehydroepiandrosterone secretion Any process that activates or increases the frequency, rate or extent of dehydroepiandrosterone secretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of DHEA secretion|positive regulation of dehydroisoandrosterone secretion|positive regulation of 3beta-hydroxyandrost-5-en-17-one secretion bf 2011-07-26T08:41:36Z biological_process owl:Class GO:0097111 biolink:NamedThing endoplasmic reticulum-Golgi intermediate compartment organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER)-Golgi intermediate compartment. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-Golgi intermediate compartment organisation|endoplasmic reticulum-Golgi intermediate compartment organization and biogenesis|ERGIC organization|ER-Golgi intermediate compartment organization pr 2011-07-29T04:45:54Z biological_process owl:Class GO:0004999 biolink:NamedThing vasoactive intestinal polypeptide receptor activity Combining with vasoactive intestinal polypeptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015042 biolink:NamedThing trypanothione-disulfide reductase activity Catalysis of the reaction: NADP+ + trypanothione = NADPH + H+ + trypanothione disulfide. tmpzr1t_l9r_go_relaxed.owl NADPH:trypanothione oxidoreductase activity|N1,N8-bis(glutathionyl)spermidine reductase activity|N(1),N(8)-bis(glutathionyl)spermidine reductase activity|trypanothione:NADP+ oxidoreductase activity|trypanothione-disulphide reductase activity|trypanothione reductase activity MetaCyc:1.8.1.12-RXN|EC:1.8.1.12|RHEA:16757 Note that this function was formerly EC:1.6.4.8. molecular_function owl:Class GO:1990603 biolink:NamedThing dark adaptation The process by which the rods of the retina gradually become fully responsive to dim light when no longer exposed to bright light. tmpzr1t_l9r_go_relaxed.owl The proteins RGS9-1 and Gb5L localize to the rod inner segment during dark adaptation, but to the rod outer segment during light adaptation. PMID:23555598 hjd 2015-01-09T20:35:46Z biological_process owl:Class GO:1901170 biolink:NamedThing naphthalene catabolic process The chemical reactions and pathways resulting in the breakdown of naphthalene. tmpzr1t_l9r_go_relaxed.owl naphthalene breakdown|naphthalene degradation|naphthalene metabolic process|naphthalene catabolism|naphthalene metabolism https://github.com/geneontology/go-ontology/issues/20974 UM-BBD_pathwayID:naph yaf 2012-07-19T09:33:50Z GO:0018931 biological_process owl:Class GO:0072485 biolink:NamedThing response to spindle assembly checkpoint signaling A process that occurs in response to signals generated as a result of spindle assembly checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in spindle assembly checkpoint|spindle assembly checkpoint effector process mah 2010-12-09T12:19:35Z biological_process owl:Class GO:0101026 biolink:NamedThing mitotic nuclear membrane biogenesis A process in which the nuclear inner or outer membrane is synthesized, aggregates, and bonds together during mitotic nuclear division. tmpzr1t_l9r_go_relaxed.owl nuclear membrane biogenesis involved in mitotic nuclear division biological_process owl:Class GO:0110012 biolink:NamedThing protein localization to P-body Any process in which a protein is transported to, or maintained at, a P-body. tmpzr1t_l9r_go_relaxed.owl protein localisation to P-body|protein localization to cytoplasmic mRNA processing body|protein localization to P body kmv 2017-05-03T14:04:51Z biological_process owl:Class GO:0015798 biolink:NamedThing myo-inositol transport The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl vitamin Bh transport biological_process owl:Class GO:0061609 biolink:NamedThing fructose-1-phosphate aldolase activity Catalysis of the reaction: D-fructose-1-phosphate = dihydroxyacetone phosphate + D-glyceraldehyde. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5656438|Reactome:R-HSA-70342|RHEA:30851 dph 2014-03-28T08:54:24Z molecular_function owl:Class GO:0102919 biolink:NamedThing 5,6-dimethylbenzimidazole synthase activity Catalysis of the reaction: FMNH2 + O2 <=> 5,6-dimethylbenzimidazole + D-erythrose 4-phosphate + dialuric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:27345|EC:1.13.11.79|MetaCyc:RXN-8771 molecular_function owl:Class GO:0140472 biolink:NamedThing cell cortex of non-growing cell tip The region directly beneath the plasma membrane at the cell tip at which no growth takes place. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17249 pg 2020-06-18T13:33:58Z cellular_component owl:Class GO:0090572 biolink:NamedThing RNA polymerase III transcription repressor complex A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-09T13:26:16Z cellular_component owl:Class GO:0071246 biolink:NamedThing cellular response to chlorate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:45:36Z biological_process owl:Class GO:0047046 biolink:NamedThing homoisocitrate dehydrogenase activity Catalysis of the reaction: NAD+ + 3-carboxy-2-hydroxyadipate = NADH + H+ + CO2 + 2-keto-adipate. tmpzr1t_l9r_go_relaxed.owl (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate:NAD+ oxidoreductase (decarboxylating)|homoisocitric dehydrogenase activity|3-carboxy-2-hydroxyadipate:NAD+ oxidoreductase (decarboxylating)|2-hydroxy-3-carboxyadipate dehydrogenase activity|3-carboxy-2-hydroxyadipate:NAD(+) oxidoreductase (decarboxylating) activity|(-)-1-hydroxy-1,2,4-butanetricarboxylate:NAD+ oxidoreductase (decarboxylating)|3-carboxy-2-hydroxyadipate dehydrogenase activity|(-)-1-hydroxy-1,2,4-butanetricarboxylate:NAD(+) oxidoreductase (decarboxylating) activity EC:1.1.1.87|MetaCyc:1.1.1.87-RXN|RHEA:11900 Note that EC:1.1.1.155 was merged into EC:1.1.1.87 as they are identical. GO:0047984 molecular_function owl:Class GO:0102126 biolink:NamedThing coniferyl aldehyde 5-hydroxylase activity Catalysis of the reaction: H+ + coniferyl aldehyde + NADPH + O2 <=> 5-hydroxy-coniferaldehyde + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1142 molecular_function owl:Class GO:0102412 biolink:NamedThing valerena-4,7(11)-diene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> valerena-4,7(11)-diene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:34467|EC:4.2.3.139|MetaCyc:RXN-13769 molecular_function owl:Class GO:1990231 biolink:NamedThing STING complex A protein dimer containing two STING monomers. It binds cyclic purine di-nucleotides. Activation of the sting complex by 2',5'-3'-5'-cyclic GMP-AMP activates nuclear transcription factor kB (NF-kB) and interferon regulatory factor 3 (IRF3) which then induce transcription of the genes encoding type I IFN and cytokines active in the innate immune response. tmpzr1t_l9r_go_relaxed.owl stimulator of interferon genes complex bhm 2013-11-12T10:58:34Z cellular_component owl:Class GO:0097708 biolink:NamedThing intracellular vesicle Any vesicle that is part of the intracellular region. tmpzr1t_l9r_go_relaxed.owl pr 2016-03-29T17:39:45Z cellular_component owl:Class GO:0090348 biolink:NamedThing regulation of cellular organofluorine metabolic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:0102776 biolink:NamedThing UDP-D-glucose:pelargonidin-3-O-beta-D-glucoside 5-O-glucosyltransferase activity Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + UDP-alpha-D-glucose <=> anthocyanidin 3,5-di-O-beta-D-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7828 molecular_function owl:Class GO:0042275 biolink:NamedThing error-free postreplication DNA repair The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA via processes such as template switching, which does not remove the replication-blocking lesions but does not increase the endogenous mutation rate. tmpzr1t_l9r_go_relaxed.owl error-free PRR|error-free replication restart Note that 'error-free' does not mean that literally zero errors occur during DNA synthesis, but that the error rate is low, comparable to that of DNA synthesis during replication. biological_process owl:Class GO:0004375 biolink:NamedThing glycine dehydrogenase (decarboxylating) activity Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. tmpzr1t_l9r_go_relaxed.owl glycine decarboxylase activity|protein P1|glycine-cleavage complex P-protein activity|glycine-cleavage complex|glycine:H-protein-lipoyllysine oxidoreductase (decarboxylating, acceptor-amino-methylating)|glycine:lipoylprotein oxidoreductase (decarboxylating and acceptor-aminomethylating)|glycine cleavage system P-protein activity|P-protein MetaCyc:GCVP-RXN|EC:1.4.4.2|RHEA:24304|Reactome:R-HSA-5693967 molecular_function owl:Class GO:0035851 biolink:NamedThing Krueppel-associated box domain binding Binding to a Krueppel-associated box (KRAB) domain of a protein. The approximately 75 amino acid KRAB domain is enriched in charged amino acids, and is found in the N-terminal regions of many zinc finger-containing transcription factors. tmpzr1t_l9r_go_relaxed.owl KRAB domain binding|Krueppel-associated box binding bf 2011-05-11T11:41:16Z molecular_function owl:Class GO:1900947 biolink:NamedThing regulation of isoprene biosynthetic process Any process that modulates the frequency, rate or extent of isoprene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of hemiterpene biosynthetic process|regulation of 2-methyl-1,3-butadiene biosynthesis|regulation of hemiterpene biosynthesis|regulation of 2-methyl-1,3-butadiene biosynthetic process tt 2012-06-14T03:21:26Z biological_process owl:Class GO:0008457 biolink:NamedThing beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide = UDP + N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->3-acetylglucosaminyltransferase|poly-N-acetyllactosamine extension enzyme activity|UDP-N-acetyl-D-glucosamine:beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,3-acetylglucosaminyltransferase activity RHEA:23004|MetaCyc:2.4.1.163-RXN|EC:2.4.1.149 molecular_function owl:Class GO:0140382 biolink:NamedThing tryptamine 4-monooxygenase activity Catalysis of the reaction: tryptamine + reduced acceptor + O(2) <=> 4-hydroxytryptamine + acceptor + H(2)O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.99.59|RHEA:15865 pg 2019-11-20T10:26:21Z molecular_function owl:Class GO:0001885 biolink:NamedThing endothelial cell development The progression of an endothelial cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904483 biolink:NamedThing synthetic cannabinoid binding Binding to synthetic cannabinoid. tmpzr1t_l9r_go_relaxed.owl mr 2015-07-14T22:30:09Z molecular_function owl:Class GO:0034733 biolink:NamedThing transcription factor TFIIIB-beta complex A transcription factor TFIIIB-beta complex that contains the TATA-binding protein (TBP), B'' and BRF, and is involved in the regulation of transcription from type 2 RNA polymerase III promoters. tmpzr1t_l9r_go_relaxed.owl Note that the subunits of TFIIIB-beta are conserved between human and yeast; however, in yeast a single TFIIIB complex regulates transcription of tRNA, 5S rRNA and U6 snRNA genes, whereas two different TBP-dependent TFIIIB activities exist in humans. cellular_component owl:Class GO:0102168 biolink:NamedThing 5-methyl-phenazine-1-carboxylate N-methyltransferase activity Catalysis of the reaction: phenazine-1-carboxylate + S-adenosyl-L-methionine <=> 5-methylphenazine-1-carboxylate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:49112|MetaCyc:RXN-11897 molecular_function owl:Class GO:0045974 biolink:NamedThing regulation of translation, ncRNA-mediated Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031610 biolink:NamedThing nuclear proteasome regulatory particle, base subcomplex The subunits of the regulatory particle that directly associate with the core complex of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901708 biolink:NamedThing (+)-3'-hydroxylarreatricin biosynthetic process The chemical reactions and pathways resulting in the formation of (+)-3'-hydroxylarreatricin. tmpzr1t_l9r_go_relaxed.owl (+)-3'-hydroxylarreatricin biosynthesis|(+)-3'-hydroxylarreatricin formation|(+)-3'-hydroxylarreatricin synthesis|(+)-3'-hydroxylarreatricin anabolism ms 2012-12-19T14:39:32Z biological_process owl:Class GO:0034177 biolink:NamedThing positive regulation of toll-like receptor 12 signaling pathway Any process that activates or increases the frequency, rate, or extent of toll-like receptor 12 signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of toll-like receptor 12 signalling pathway|positive regulation of TLR12 signaling pathway biological_process owl:Class GO:0009132 biolink:NamedThing nucleoside diphosphate metabolic process The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside diphosphate metabolism biological_process owl:Class GO:0008057 biolink:NamedThing eye pigment granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of intracellular pigment storage granules in the eye. tmpzr1t_l9r_go_relaxed.owl eye pigment granule organisation|eye pigment granule organization and biogenesis GO:0048751|GO:0045318|GO:0008059 biological_process owl:Class GO:0048753 biolink:NamedThing pigment granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pigment granule. tmpzr1t_l9r_go_relaxed.owl pigment granule organisation|pigment granule organization and biogenesis biological_process owl:Class GO:0046487 biolink:NamedThing glyoxylate metabolic process The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH. tmpzr1t_l9r_go_relaxed.owl glyoxylate metabolism biological_process owl:Class GO:0052716 biolink:NamedThing hydroquinone:oxygen oxidoreductase activity Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. tmpzr1t_l9r_go_relaxed.owl p-diphenol:oxygen oxidoreductase activity|laccase reaction|benzenediol:oxygen oxidoreductase activity KEGG_REACTION:R00083|RHEA:11276|MetaCyc:LACCASE-RXN|EC:1.10.3.2 ai 2011-08-11T03:18:19Z molecular_function owl:Class GO:0090322 biolink:NamedThing regulation of superoxide metabolic process Any process that modulates the rate, frequency, or extent of superoxide metabolism, the chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. tmpzr1t_l9r_go_relaxed.owl regulation of superoxide metabolism tb 2010-05-06T02:29:05Z biological_process owl:Class GO:0090655 biolink:NamedThing double-stranded/single-stranded junction telomeric DNA binding Binding to a junction formed at the point where double-stranded telomeric DNA becomes a single-stranded G-rich telomeric DNA 3' overhang. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-02T11:33:39Z molecular_function owl:Class GO:0000406 biolink:NamedThing double-strand/single-strand DNA junction binding Binding to a DNA segment that contains double-stranded DNA flanked by a region of single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004522 biolink:NamedThing ribonuclease A activity Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates. tmpzr1t_l9r_go_relaxed.owl gene S locus-specific glycoproteins|ribonucleic phosphatase activity|ceratitis capitata alkaline ribonuclease activity|S-genotype-assocd. glycoproteins|RNase activity|SLSG glycoproteins|gene S glycoproteins|RNase A activity|ribonucleate 3'-pyrimidino-oligonucleotidohydrolase activity|endoribonuclease I|alkaline ribonuclease activity|pancreatic RNase activity|ribonuclease I activity|RNase I activity|pancreatic ribonuclease activity MetaCyc:3.1.27.5-RXN|EC:4.6.1.18|Wikipedia:Ribonuclease_A molecular_function owl:Class GO:0015526 biolink:NamedThing hexose-phosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexose phosphate(out) + inorganic phosphate(in) = hexose phosphate(in) + inorganic phosphate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008031 biolink:NamedThing eclosion hormone activity The action characteristic of eclosion hormone, a peptide hormone that, upon receptor binding, triggers the death of certain muscles and neurons during insect metamorphosis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046714 biolink:NamedThing borate binding Binding to borate, the anion (BO3)3-. tmpzr1t_l9r_go_relaxed.owl boron binding molecular_function owl:Class GO:0046439 biolink:NamedThing L-cysteine metabolic process The chemical reactions and pathways involving L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-cysteine metabolism biological_process owl:Class GO:0030779 biolink:NamedThing 10-hydroxydihydrosanguinarine 10-O-methyltransferase activity Catalysis of the reaction: 10-hydroxydihydrosanguinarine + S-adenosyl-L-methionine(1+) = S-adenosyl-L-homocysteine + dihydrochelirubine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:10-hydroxydihydrosanguinarine 10-O-methyltransferase activity KEGG_REACTION:R04707|MetaCyc:2.1.1.119-RXN|RHEA:18541|EC:2.1.1.119 molecular_function owl:Class GO:0045497 biolink:NamedThing female analia development The process whose specific outcome is the progression of the analia of the female over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007487 biolink:NamedThing analia development The process whose specific outcome is the progression of the analia over time, from its formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is analia development in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046524 biolink:NamedThing sucrose-phosphate synthase activity Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl sucrosephosphate-UDP glucosyltransferase activity|SPS|sucrose phosphate synthetase activity|UDPglucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase activity|UDP-glucose-fructose-phosphate glucosyltransferase activity|UDP-glucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase activity|sucrose phosphate-uridine diphosphate glucosyltransferase activity|sucrose 6-phosphate synthase activity|UDPglucose-fructose-phosphate glucosyltransferase activity|uridine diphosphoglucose-fructose phosphate glucosyltransferase activity MetaCyc:SUCROSE-PHOSPHATE-SYNTHASE-RXN|EC:2.4.1.14|RHEA:22172 molecular_function owl:Class GO:0048874 biolink:NamedThing host-mediated regulation of intestinal microbiota composition The biological process involved in maintaining the steady-state number of cells within a population of free-living cells such as the bacteria in the gut. tmpzr1t_l9r_go_relaxed.owl host-induced regulation of intestinal microbiota composition|homeostasis of number of cells in a free-living population https://github.com/geneontology/go-ontology/issues/15748 biological_process owl:Class GO:0031107 biolink:NamedThing septin ring disassembly The controlled breakdown of a septin ring. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034460 biolink:NamedThing uropod assembly The assembly of a uropod by rearrangement of the cytoskeleton and overlying membrane. tmpzr1t_l9r_go_relaxed.owl uropod formation biological_process owl:Class GO:0004809 biolink:NamedThing tRNA (guanine-N2-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. tmpzr1t_l9r_go_relaxed.owl tRNA 2,2-dimethylguanosine-26 methyltransferase activity|tRNA(m(2,2)G26)dimethyltransferase activity|transfer ribonucleate guanine 2-methyltransferase activity|N2,N2-dimethylguanine tRNA methyltransferase activity|S-adenosyl-L-methionine:tRNA (guanine-N2-)-methyltransferase activity|transfer ribonucleate guanine N2-methyltransferase activity|N(2),N(2)-dimethylguanine tRNA methyltransferase activity|S-adenosyl-L-methionine:tRNA (guanine-2-N-)-methyltransferase activity|transfer RNA guanine 2-methyltransferase activity|guanine-N2-methylase activity|tRNA(guanine-26,N(2)-N(2)) methyltransferase activity|tRNA(guanine-26,N2-N2) methyltransferase activity Reactome:R-HSA-6786501|Reactome:R-HSA-6782416 molecular_function owl:Class GO:0035354 biolink:NamedThing Toll-like receptor 1-Toll-like receptor 2 protein complex A heterodimeric protein complex containing Toll-like receptor 1 (TLR1) and Toll-like receptor 2 (TLR2). tmpzr1t_l9r_go_relaxed.owl TLR1:TLR2 complex|TLR1-TLR2 protein complex|TLR2:TLR1 heterodimer|toll-like receptor TLR1:TLR2 heterodimeric complex bf 2010-03-04T04:35:44Z GO:0038125 cellular_component owl:Class GO:0043627 biolink:NamedThing response to estrogen Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics. tmpzr1t_l9r_go_relaxed.owl response to oestrogen stimulus|response to estrogen stimulus biological_process owl:Class GO:0033489 biolink:NamedThing cholesterol biosynthetic process via desmosterol The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate desmosterol. tmpzr1t_l9r_go_relaxed.owl cholesterol formation via desmosterol|cholesterol synthesis via desmosterol|cholesterol biosynthesis via desmosterol|cholesterol anabolism via desmosterol MetaCyc:PWY66-4 biological_process owl:Class GO:1900636 biolink:NamedThing heptadecane biosynthetic process The chemical reactions and pathways resulting in the formation of heptadecane. tmpzr1t_l9r_go_relaxed.owl heptadecane synthesis|heptadecane anabolism|heptadecane formation|heptadecane biosynthesis tt 2012-05-21T07:05:21Z biological_process owl:Class GO:0034932 biolink:NamedThing 1-methoxypyrene 6,7-monooxygenase activity Catalysis of the reaction: 1-methoxypyrene + O2 + 2 H+ + 2 e- = 1-methoxypyrene-6,7-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0954 molecular_function owl:Class GO:0046509 biolink:NamedThing 1,2-diacylglycerol 3-beta-galactosyltransferase activity Catalysis of the reaction: 1,2-diacyl-sn-glycerol + UDP-D-galactose = 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP galactose-1,2-diacylglycerol galactosyltransferase activity|UDPgalactose:1,2-diacylglycerol 3-beta-D-galactosyltransferase activity|MGDG synthase activity|UDP-galactose-diacylglyceride galactosyltransferase activity|1-beta-MGDG activity|monogalactosyldiacylglycerol synthase activity|uridine diphosphogalactose-1,2-diacylglycerol galactosyltransferase activity|UDP-galactose:1,2-diacyl-sn-glycerol 3-beta-D-galactosyltransferase activity|1beta-MGDG|UDP-galactose:diacylglycerol galactosyltransferase activity KEGG_REACTION:R02691|EC:2.4.1.46|MetaCyc:2.4.1.46-RXN|RHEA:14945 molecular_function owl:Class GO:0043918 biolink:NamedThing cadaverine aminopropyltransferase activity Catalysis of the reaction: S-adenosylmethioninamine + cadaverine = 5'-methylthioadenosine + N-(3-aminopropyl)cadaverine. tmpzr1t_l9r_go_relaxed.owl cadaverine aminopropyl transferase activity EC:2.5.1.104 molecular_function owl:Class GO:0019513 biolink:NamedThing lactose catabolic process, using glucoside 3-dehydrogenase The chemical reactions and pathways resulting in the breakdown of lactose, catalyzed by the enzyme glucoside 3-dehydrogenase (EC:1.1.99.13). tmpzr1t_l9r_go_relaxed.owl lactose degradation, using glucoside 3-dehydrogenase|lactose breakdown, using glucoside 3-dehydrogenase MetaCyc:LACTOSEUTIL-PWY biological_process owl:Class GO:0060282 biolink:NamedThing positive regulation of oocyte development Any process that increases the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033327 biolink:NamedThing Leydig cell differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036249 biolink:NamedThing cadmium ion import into vacuole The directed movement of cadmium ions into the vacuole. tmpzr1t_l9r_go_relaxed.owl vacuolar cadmium import bf 2012-05-31T11:13:44Z biological_process owl:Class GO:0060420 biolink:NamedThing regulation of heart growth Any process that modulates the rate or extent of heart growth. Heart growth is the increase in size or mass of the heart. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018228 biolink:NamedThing peptidyl-S-geranylgeranyl-L-cysteine biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form peptidyl-S-geranylgeranylcysteine; formation of S-geranylgeranyl-L-cysteine may be coupled with subsequent cleavage of a carboxy-terminal tripeptide for the CAAX motif and methyl esterification of the geranylgeranylated cysteine; methyl esterification but not cleavage occurs for the CXC motif. For the type II geranylgeranyltransferase the residue may be found at the first and final positions in the sequence motif C-X-C* or at the final position in the sequence motif C-C*. These motifs are necessary but not sufficient for modification. tmpzr1t_l9r_go_relaxed.owl peptidyl-S-geranylgeranyl-L-cysteine anabolism from peptidyl-cysteine|peptidyl-S-geranylgeranyl-L-cysteine formation from peptidyl-cysteine|peptidyl-S-geranylgeranyl-L-cysteine synthesis from peptidyl-cysteine RESID:AA0104 biological_process owl:Class GO:0050282 biolink:NamedThing serine 2-dehydrogenase activity Catalysis of the reaction: L-serine + H2O + NAD+ = 3-hydroxypyruvate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl L-serine:NAD oxidoreductase (deaminating) activity|L-serine:NAD+ 2-oxidoreductase (deaminating)|serine dehydrogenase activity EC:1.4.1.7|RHEA:20884|MetaCyc:SERINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0005951 biolink:NamedThing carbamoyl-phosphate synthase complex A protein complex that catalyzes the formation of carbamoyl phosphate; comprises a small subunit that binds and cleaves glutamine, and a large subunit that accepts the ammonia group cleaved from glutamine, binds all of the remaining substrates and effectors, and carries out all of the other catalytic events. tmpzr1t_l9r_go_relaxed.owl arginine-specific carbamoyl phosphate synthetase complex|carbamoyl phosphate synthase complex|carbamoyl-phosphate synthase arginine-specific complex Note that in higher eukaryotes, carbamoyl-phosphate synthase is usually a single polypeptide, not a complex, and should therefore not be annotated to this component term. cellular_component owl:Class GO:0070614 biolink:NamedThing tungstate ion transport The directed movement of tungstate (WO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tungstate is a bivalent oxoanion of tungsten. tmpzr1t_l9r_go_relaxed.owl mah 2009-04-29T03:07:40Z biological_process owl:Class GO:0016281 biolink:NamedThing eukaryotic translation initiation factor 4F complex The eukaryotic translation initiation factor 4F complex is composed of eIF4E, eIF4A and eIF4G; it is involved in the recognition of the mRNA cap, ATP-dependent unwinding of the 5'-terminal secondary structure and recruitment of the mRNA to the ribosome. tmpzr1t_l9r_go_relaxed.owl eIF-4F|eukaryotic translation initiation factor 4 complex cellular_component owl:Class GO:0018147 biolink:NamedThing molybdenum incorporation via L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) The incorporation of molybdenum into a protein via L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide). tmpzr1t_l9r_go_relaxed.owl RESID:AA0248 biological_process owl:Class GO:0050844 biolink:NamedThing peptidyl-selenocysteine modification The modification of peptidyl-selenocysteine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010432 biolink:NamedThing bract development The process whose specific outcome is the progression of the bract over time, from its formation to the mature structure. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039646 biolink:NamedThing modulation by virus of host G0/G1 transition checkpoint Any viral process that modulates the frequency, rate or extent of the host cell G0/G1 transition checkpoint. tmpzr1t_l9r_go_relaxed.owl G0/G1 host cell cycle checkpoint dysregulation by virus VZ:881 bf 2012-10-09T15:11:22Z biological_process owl:Class GO:0047435 biolink:NamedThing 5-guanidino-2-oxopentanoate decarboxylase activity Catalysis of the reaction: 5-guanidino-2-oxopentanoate + H(+) = 4-guanidinobutanal + CO(2). tmpzr1t_l9r_go_relaxed.owl 2-oxo-5-guanidinopentanoate decarboxylase activity|2-oxo-5-guanidinopentanoate carboxy-lyase (4-guanidinobutanal-forming)|alpha-ketoarginine decarboxylase activity|2-oxo-5-guanidinopentanoate carboxy-lyase activity|2-oxo-5-guanidinovalerate alpha-ketoarginine decarboxylase activity RHEA:11340|KEGG_REACTION:R03178|MetaCyc:4.1.1.75-RXN|EC:4.1.1.75 molecular_function owl:Class GO:0070655 biolink:NamedThing mechanosensory epithelium regeneration The regrowth of lost or destroyed mechanosensory epithelia. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:05:18Z biological_process owl:Class GO:0070654 biolink:NamedThing sensory epithelium regeneration The regrowth of a sensory epithelium following its loss or destruction. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:02:27Z biological_process owl:Class GO:0018403 biolink:NamedThing protein-dermatan sulfate linkage via dermatan 4-sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine Dermatan sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues. tmpzr1t_l9r_go_relaxed.owl protein-dermatan sulphate linkage via dermatan 4-sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine RESID:AA0209 biological_process owl:Class GO:0015703 biolink:NamedThing chromate transport The directed movement of chromate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903199 biolink:NamedThing negative regulation of L-dopa decarboxylase activity Any process that stops, prevents or reduces the frequency, rate or extent of L-dopa decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of DDC activity|downregulation of DDC activity|down regulation of L-dopa decarboxylase activity|down-regulation of DDC activity|down regulation of DOPA decarboxylase activity|inhibition of 4-dihydroxyl-L-phenylalanine decarboxylase activity|negative regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|inhibition of DDC activity|down regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|downregulation of DOPA decarboxylase activity|downregulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|downregulation of L-dopa decarboxylase activity|inhibition of DOPA decarboxylase activity|down-regulation of L-dopa decarboxylase activity|inhibition of L-dopa decarboxylase activity|down regulation of DDC activity|down-regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity|down-regulation of DOPA decarboxylase activity|negative regulation of DOPA decarboxylase activity bf 2014-07-21T09:32:37Z biological_process owl:Class GO:0075277 biolink:NamedThing positive regulation of telium development Any process that activates, maintains or increases the frequency, rate or extent of telium development, a process that leads to the formation of a teliospore-bearing sorus of the rust fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106341 biolink:NamedThing omega-hydroxyceramide transacylase activity Catalysis of the reaction: 1,2,3-tri-(9Z,12Z)-octadecadienoylglycerol + N-(30-hydroxytriacontanoyl)-sphing-4-enine = di-(9Z,12Z)-octadecadienoylglycerol + N-[30-(9Z,12Z-octadecadienoyloxy)-triacontanoyl]-sphing-4-enine. tmpzr1t_l9r_go_relaxed.owl RHEA:55264 hjd 2020-11-17T17:12:43Z molecular_function owl:Class GO:0102914 biolink:NamedThing N-methyl-3-aminomethylindole N-methyltransferase activity Catalysis of the reaction: N-methyl-3-aminomethylindole + S-adenosyl-L-methionine = H+ + gramine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:52272|MetaCyc:RXN-8687 molecular_function owl:Class GO:0140331 biolink:NamedThing aminophospholipid translocation The movement of an aminophospholipid molecule from one leaflet of a membrane bilayer to the opposite leaflet. tmpzr1t_l9r_go_relaxed.owl pg 2019-05-10T13:46:34Z biological_process owl:Class GO:0003921 biolink:NamedThing GMP synthase activity Catalysis of the reaction: ATP + XMP + NH4(+) = AMP + diphosphate + GMP + 2H(+). tmpzr1t_l9r_go_relaxed.owl RHEA:18301|MetaCyc:GMP-SYN-NH3-RXN molecular_function owl:Class GO:0047042 biolink:NamedThing androsterone dehydrogenase (B-specific) activity Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione. The reaction is B-specific (i.e. the pro-S hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD(P)+. tmpzr1t_l9r_go_relaxed.owl 3-alpha-HSD activity|3alpha-hydroxysteroid:NAD(P)+ oxidoreductase (B-specific)|sterognost 3alpha|hydroxyprostaglandin dehydrogenase activity|3alpha-hydroxysteroid oxidoreductase activity|3alpha-HSD|3alpha-hydroxysteroid dehydrogenase (B-specific)|3-alpha-hydroxysteroid dehydrogenase (B-specific) activity Wikipedia:3alpha-hydroxysteroid_dehydrogenase_(B-specific)|EC:1.1.1.50|MetaCyc:1.1.1.50-RXN molecular_function owl:Class GO:0047023 biolink:NamedThing androsterone dehydrogenase activity Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione. tmpzr1t_l9r_go_relaxed.owl 3(or 17)alpha-hydroxysteroid:NAD(P)+ oxidoreductase activity|3(17)alpha-hydroxysteroid dehydrogenase activity|3(or 17)-alpha-hydroxysteroid dehydrogenase activity|3(or 17)alpha-hydroxysteroid dehydrogenase activity EC:1.1.1.209|MetaCyc:1.1.1.209-RXN molecular_function owl:Class GO:0097084 biolink:NamedThing vascular associated smooth muscle cell development The process aimed at the progression of a vascular smooth muscle cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels. tmpzr1t_l9r_go_relaxed.owl vascular smooth muscle cell development pr 2011-06-20T04:03:08Z biological_process owl:Class GO:0150091 biolink:NamedThing multiple spine synapse organization, multiple dendrites A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse between a multiple synapse bouton and two or more dendritic spines protruding either from a single dendrite or from multiple dendrites. tmpzr1t_l9r_go_relaxed.owl bc 2018-08-08T15:05:29Z biological_process owl:Class GO:0032221 biolink:NamedThing Rpd3S/Clr6-CII complex A eukaryotically conserved histone deacetylase complex which deacetylates histones across gene coding regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; Rpd3p, Sin3p, Ume1p, Rco1p and Eaf3 in Saccharomyces; homologs thereof in other species). tmpzr1t_l9r_go_relaxed.owl Clr6-CII|Clr6 histone deacetylase complex II'|Clr6 histone deacetylase complex II|Clr6S complex|Rpd3S complex|Rpd3C(S) https://github.com/geneontology/go-ontology/issues/19819 GO:0000509 cellular_component owl:Class GO:0050415 biolink:NamedThing formimidoylglutamase activity Catalysis of the reaction: N-formimidoyl-L-glutamate + H(2)O = L-glutamate + formamide. tmpzr1t_l9r_go_relaxed.owl N-formiminoglutamate hydrolase activity|formiminoglutamase activity|N-formimino-L-glutamate formiminohydrolase activity|N-formimidoyl-L-glutamate formimidoylhydrolase activity|formiminoglutamate hydrolase activity EC:3.5.3.8|RHEA:22492|MetaCyc:FORMIMINOGLUTAMASE-RXN|KEGG_REACTION:R02285 molecular_function owl:Class GO:0018064 biolink:NamedThing protein-L-histidine N-tele-methyltransferase activity Catalysis of the reaction: L-histidyl-[protein] + S-adenosyl-L-methionine = N(tele)-methyl-L-histidyl-[protein] + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl protein (histidine) methyltransferase activity|actin-specific histidine methyltransferase activity|S-adenosyl-L-methionine:protein-L-histidine N-tele-methyltransferase activity|protein methylase IV activity|S-adenosyl methionine:protein-histidine N-methyltransferase activity|protein-histidine N-methyltransferase activity|peptidyl-histidine N-methyltransferase activity RHEA:19369|EC:2.1.1.85|MetaCyc:2.1.1.85-RXN molecular_function owl:Class GO:0018032 biolink:NamedThing protein amidation Addition of an amide group from a glycine to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid amidation biological_process owl:Class GO:2000271 biolink:NamedThing positive regulation of fibroblast apoptotic process Any process that activates or increases the frequency, rate or extent of fibroblast apoptotic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of fibroblast apoptosis jl 2010-11-23T01:07:29Z biological_process owl:Class GO:2000384 biolink:NamedThing negative regulation of ectoderm development Any process that stops, prevents or reduces the frequency, rate or extent of ectoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:17:27Z biological_process owl:Class GO:1903942 biolink:NamedThing positive regulation of respiratory gaseous exchange Any process that activates or increases the frequency, rate or extent of respiratory gaseous exchange. tmpzr1t_l9r_go_relaxed.owl up-regulation of respiratory gaseous exchange|activation of respiratory gaseous exchange|up regulation of respiratory gaseous exchange|upregulation of respiratory gaseous exchange sl 2015-02-17T20:26:35Z biological_process owl:Class GO:0102191 biolink:NamedThing 4alpha-carboxy-5alpha-cholesta-7,24-dien-3beta-ol dehydrogenase/C4-decarboxylase activity Catalysis of the reaction: 4alpha-carboxy-5alpha-cholesta-7,24-dien-3beta-ol + NAD(1-) <=> 5alpha-cholesta-7,24-dien-3-one + NADH(2-) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11959|RHEA:59016|EC:1.1.1.418 molecular_function owl:Class GO:0150191 biolink:NamedThing positive regulation of interleukin-32 production Any process that activates or increases the frequency, rate or extent of interleukin-32 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of interleukin-32 biosynthetic process|positive regulation of interleukin-32 secretion bc 2020-02-21T10:33:39Z GO:0150194 biological_process owl:Class GO:0019397 biolink:NamedThing gallate catabolic process via 2-pyrone-4,6-dicarboxylate The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, via the intermediate 2-pyrone-4,6-dicarboxylate. tmpzr1t_l9r_go_relaxed.owl gallic acid catabolic process via 2-pyrone-4,6-dicarboxylate|gallate breakdown via 2-pyrone-4,6-dicarboxylate|gallate degradation via 2-pyrone-4,6-dicarboxylate|gallic acid catabolism via 2-pyrone-4,6-dicarboxylate MetaCyc:GALLATE-DEGRADATION-I-PWY biological_process owl:Class GO:0015963 biolink:NamedThing diadenosine triphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine triphosphate synthesis|diadenosine triphosphate formation|diadenosine triphosphate biosynthesis|diadenosine triphosphate anabolism biological_process owl:Class GO:0015962 biolink:NamedThing diadenosine triphosphate metabolic process The chemical reactions and pathways involving diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine triphosphate metabolism biological_process owl:Class GO:0002357 biolink:NamedThing defense response to tumor cell Reactions triggered in response to the presence of a tumor cell that act to protect the cell or organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903013 biolink:NamedThing response to differentiation-inducing factor 1 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one stimulus. tmpzr1t_l9r_go_relaxed.owl response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one|response to DIF-1|DIF-1|response to DIF1 rjd 2014-05-14T16:18:11Z biological_process owl:Class GO:0060778 biolink:NamedThing primary leaflet morphogenesis The process in which the primary leaflet attains its shape. A primary leaflet is a leaflet that develops directly from the rachis. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T07:15:48Z biological_process owl:Class GO:0002771 biolink:NamedThing inhibitory killer cell immunoglobulin-like receptor signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a inhibitory killer cell immunoglobulin-like receptor capable of inhibiting an immune effector process contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl KIR signaling pathway|inhibitory killer cell immunoglobulin-like receptor signalling pathway|killer cell inhibitory receptor signaling pathway biological_process owl:Class GO:0030122 biolink:NamedThing AP-2 adaptor complex A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC). tmpzr1t_l9r_go_relaxed.owl HA2 clathrin adaptor|HA2 cellular_component owl:Class GO:0031905 biolink:NamedThing early endosome lumen The volume enclosed by the membrane of an early endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043830 biolink:NamedThing thiol-driven fumarate reductase activity Catalysis of the reaction: fumarate + coenzyme M + coenzyme B = succinate + coenzyme M + coenzyme B + heterodisulfide. tmpzr1t_l9r_go_relaxed.owl EC:1.3.99.- molecular_function owl:Class GO:0008909 biolink:NamedThing isochorismate synthase activity Catalysis of the reaction: chorismate = isochorismate. tmpzr1t_l9r_go_relaxed.owl isochorismate hydroxymutase activity|isochorismate synthetase activity|isochorismate mutase activity KEGG_REACTION:R01717|RHEA:18985|EC:5.4.4.2|MetaCyc:ISOCHORSYN-RXN Note that this function was formerly EC:5.4.99.6. molecular_function owl:Class GO:0033153 biolink:NamedThing T cell receptor V(D)J recombination The process in which T cell receptor V, D, and J, or V and J gene segments, depending on the specific locus, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). tmpzr1t_l9r_go_relaxed.owl T cell receptor V-D-J joining|T cell receptor V-D-J recombination|T-cell receptor V(D)J recombination|T cell receptor V-J recombination|T cell receptor V(D)J joining|T cell receptor V-J joining|TCR V(D)J recombination biological_process owl:Class GO:1904972 biolink:NamedThing negative regulation of viral translation Any process that stops, prevents or reduces the frequency, rate or extent of viral translation. tmpzr1t_l9r_go_relaxed.owl inhibition of viral protein biosynthetic process|downregulation of viral protein anabolism|inhibition of viral protein anabolism|down regulation of viral protein biosynthesis|inhibition of viral protein synthesis|down-regulation of viral protein anabolism|down-regulation of viral translation|down-regulation of viral protein formation|down regulation of viral protein formation|inhibition of viral protein formation|downregulation of viral protein biosynthesis|downregulation of viral translation|down regulation of viral protein biosynthetic process|negative regulation of viral protein anabolism|down regulation of viral translation|down-regulation of viral protein synthesis|negative regulation of viral protein biosynthetic process|downregulation of viral protein synthesis|negative regulation of viral protein biosynthesis|downregulation of viral protein formation|down regulation of viral protein anabolism|negative regulation of viral protein formation|inhibition of viral protein biosynthesis|down regulation of viral protein synthesis|down-regulation of viral protein biosynthetic process|inhibition of viral translation|downregulation of viral protein biosynthetic process|negative regulation of viral protein synthesis|down-regulation of viral protein biosynthesis bhm 2016-02-17T15:53:08Z biological_process owl:Class GO:0038085 biolink:NamedThing vascular endothelial growth factor binding Binding to a vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl VEGF binding bf 2012-02-01T02:36:36Z molecular_function owl:Class GO:0097519 biolink:NamedThing DNA recombinase complex A protein-DNA complex consisting of a higher-order oligomer of strand exchange proteins (recombinases) on single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:43:22Z cellular_component owl:Class GO:1902853 biolink:NamedThing negative regulation of nuclear migration during mitotic telophase Any process that stops, prevents or reduces the frequency, rate or extent of nuclear migration during mitotic telophase. tmpzr1t_l9r_go_relaxed.owl downregulation of nuclear migration during mitotic telophase|inhibition of nuclear migration during mitotic telophase|down-regulation of nuclear migration during mitotic telophase|down regulation of nuclear migration during mitotic telophase vw 2014-04-02T15:35:56Z biological_process owl:Class GO:1902839 biolink:NamedThing negative regulation of nuclear migration along microtubule Any process that stops, prevents or reduces the frequency, rate or extent of nuclear migration along microtubule. tmpzr1t_l9r_go_relaxed.owl inhibition of transport of nucleus, microtubule-mediated|downregulation of nuclear migration, microtubule-mediated|down regulation of nuclear migration, microtubule-mediated|down regulation of microtubule cytoskeleton-dependent nuclear positioning|down-regulation of transport of nucleus, microtubule-mediated|negative regulation of transport of nucleus by microtubules|negative regulation of transport of nucleus, microtubule-mediated|down-regulation of microtubule cytoskeleton-dependent nucleus positioning|downregulation of microtubule-dependent nucleus positioning|negative regulation of nuclear migration, microtubule-mediated|down regulation of microtubule-dependent nuclear positioning|down-regulation of nuclear migration, microtubule-mediated|down regulation of nuclear migration along microtubule|down-regulation of microtubule-dependent nucleus positioning|inhibition of microtubule-mediated nuclear migration|inhibition of microtubule cytoskeleton-dependent nucleus positioning|inhibition of nuclear migration, microtubule-mediated|negative regulation of microtubule-mediated nuclear migration|down regulation of microtubule cytoskeleton-dependent nucleus positioning|downregulation of transport of nucleus, microtubule-mediated|negative regulation of microtubule cytoskeleton-dependent nucleus positioning|inhibition of nuclear migration along microtubule|downregulation of nuclear migration along microtubule|down-regulation of transport of nucleus by microtubules|down-regulation of nuclear migration along microtubule|negative regulation of microtubule-dependent nuclear positioning|down regulation of microtubule-dependent nucleus positioning|downregulation of microtubule cytoskeleton-dependent nucleus positioning|negative regulation of microtubule-dependent nucleus positioning|down regulation of microtubule-mediated nuclear migration|downregulation of microtubule-dependent nuclear positioning|inhibition of microtubule-dependent nucleus positioning|downregulation of microtubule cytoskeleton-dependent nuclear positioning|down regulation of transport of nucleus by microtubules|negative regulation of microtubule cytoskeleton-dependent nuclear positioning|inhibition of microtubule cytoskeleton-dependent nuclear positioning|inhibition of microtubule-dependent nuclear positioning|inhibition of transport of nucleus by microtubules|down-regulation of microtubule-mediated nuclear migration|down-regulation of microtubule cytoskeleton-dependent nuclear positioning|downregulation of microtubule-mediated nuclear migration|down-regulation of microtubule-dependent nuclear positioning|downregulation of transport of nucleus by microtubules|down regulation of transport of nucleus, microtubule-mediated vw 2014-04-01T13:50:29Z biological_process owl:Class GO:1903105 biolink:NamedThing negative regulation of insulin receptor signaling pathway involved in determination of adult lifespan Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling pathway involved in determination of adult lifespan. tmpzr1t_l9r_go_relaxed.owl negative regulation of daf-2 receptor signaling pathway of determination of adult lifespan|down-regulation of insulin receptor signalling pathway of determination of adult lifespan|down regulation of insulin receptor signalling pathway of determination of adult lifespan|downregulation of insulin receptor signaling pathway of determination of adult lifespan|down-regulation of daf-2 receptor signaling pathway of determination of adult lifespan|down-regulation of insulin receptor signaling pathway of determination of adult lifespan|down regulation of insulin receptor signaling pathway of determination of adult lifespan|inhibition of daf-2 receptor signaling pathway of determination of adult lifespan|inhibition of insulin receptor signalling pathway of determination of adult lifespan|negative regulation of insulin receptor signaling pathway of determination of adult lifespan|down-regulation of insulin receptor signaling pathway involved in determination of adult lifespan|inhibition of insulin receptor signaling pathway of determination of adult lifespan|inhibition of insulin receptor signaling pathway involved in determination of adult lifespan|negative regulation of insulin receptor signalling pathway of determination of adult lifespan|downregulation of insulin receptor signaling pathway involved in determination of adult lifespan|downregulation of insulin receptor signalling pathway of determination of adult lifespan|down regulation of insulin receptor signaling pathway involved in determination of adult lifespan|down regulation of daf-2 receptor signaling pathway of determination of adult lifespan|downregulation of daf-2 receptor signaling pathway of determination of adult lifespan kmv 2014-06-05T20:56:12Z biological_process owl:Class GO:0102861 biolink:NamedThing 1-18:2-2-18:1-phosphatidylcholine desaturase activity (SN2-18:2 forming) Catalysis of the reaction: 1-18:2-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor = 1-18:2-2-18:2-sn-glycerol-3-phosphocholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.22|MetaCyc:RXN-8328 molecular_function owl:Class GO:0018972 biolink:NamedThing toluene-4-sulfonate metabolic process The chemical reactions and pathways involving toluene-4-sulfonate, the anion of 4-toluene sulfonic acid, a white crystalline solid which is highly hygroscopic and soluble in water. tmpzr1t_l9r_go_relaxed.owl toluene-4-sulphonate metabolic process|toluene-4-sulphonate metabolism|4-methylbenzenesulfonate metabolism|toluene-4-sulfonate metabolism|4-toluenesulfonate metabolism|4-toluenesulfonate metabolic process|4-methylbenzenesulfonate metabolic process UM-BBD_pathwayID:tsa|MetaCyc:TOLSULFDEG-PWY biological_process owl:Class GO:0106058 biolink:NamedThing positive regulation of calcineurin-mediated signaling Any process that activates or increases the frequency, rate or extent of calcineurin-mediated signaling. tmpzr1t_l9r_go_relaxed.owl hjd 2017-09-18T16:57:06Z biological_process owl:Class GO:0046563 biolink:NamedThing methanol oxidase activity Catalysis of the reaction: O2 + methanol = H2O2 + formaldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:METHANOL-OXIDASE-RXN|EC:1.1.3.- Note that EC:1.1.3.31 was deleted from EC as it cannot be distinguished from alcohol oxidase (EC:1.1.3.13). molecular_function owl:Class GO:0075510 biolink:NamedThing macropinocytosis involved in viral entry into host cell Any macropinocytosis that is involved in the uptake of a virus into a host cell. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via macropinocytosis VZ:800 jl 2011-07-27T11:24:59Z biological_process owl:Class GO:0047849 biolink:NamedThing dextransucrase activity Catalysis of the reaction: sucrose + 1,6-alpha-D-glucosyl(n) = D-fructose + 1,6-alpha-D-glucosyl(n+1). tmpzr1t_l9r_go_relaxed.owl CEP|sucrose 6-glucosyltransferase activity|SGE|sucrose-1,6-alpha-glucan glucosyltransferase activity|sucrose:1,6-alpha-D-glucan 6-alpha-D-glucosyltransferase activity MetaCyc:DEXTRANSUCRASE-RXN|EC:2.4.1.5 molecular_function owl:Class GO:0004778 biolink:NamedThing succinyl-CoA hydrolase activity Catalysis of the reaction: H(2)O + succinyl-CoA = CoA + H(+) + succinate. tmpzr1t_l9r_go_relaxed.owl succinyl coenzyme A deacylase activity|succinyl coenzyme A hydrolase activity|succinyl-CoA acylase activity MetaCyc:SUCCINYL-COA-HYDROLASE-RXN|RHEA:11516|EC:3.1.2.3|KEGG_REACTION:R00407 molecular_function owl:Class GO:0040040 biolink:NamedThing thermosensory behavior Behavior that is dependent upon the sensation of temperature. tmpzr1t_l9r_go_relaxed.owl thermosensory behaviour|behavioral response to temperature stimulus|behavioural response to temperature stimulus biological_process owl:Class GO:0001917 biolink:NamedThing photoreceptor inner segment The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050156 biolink:NamedThing ornithine N-benzoyltransferase activity Catalysis of the reaction: L-ornithine + 2 benzoyl-CoA = N(2),N(5)-dibenzoyl-L-ornithine + 2 CoA + 2 H(+). tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA:L-ornithine N-benzoyltransferase activity|ornithine N-acyltransferase activity EC:2.3.1.127|KEGG_REACTION:R00664|RHEA:16929|MetaCyc:ORNITHINE-N-BENZOYLTRANSFERASE-RXN molecular_function owl:Class GO:0047847 biolink:NamedThing deoxyuridine phosphorylase activity Catalysis of the reaction: deoxyuridine + phosphate = uracil + deoxy-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyuridine:phosphate 2-deoxy-alpha-D-ribosyltransferase activity|deoxyuridine:phosphate deoxy-D-ribosyltransferase activity|deoxyuridine:phosphate deoxy-alpha-D-ribosyltransferase activity EC:2.4.2.23|MetaCyc:DEOXYURIDINE-PHOSPHORYLASE-RXN|RHEA:22824 molecular_function owl:Class GO:0046892 biolink:NamedThing peptidyl-S-carbamoyl-L-cysteine dehydration The dehydration of peptidyl-S-carbamoyl-L-cysteine to form peptidyl-S-cyano-L-cysteine. tmpzr1t_l9r_go_relaxed.owl formation of peptidyl-serine thiocyanate ester|formation of peptidyl-S-cyanocysteine RESID:AA0333 biological_process owl:Class GO:0006676 biolink:NamedThing mannosyl diphosphorylinositol ceramide metabolic process The chemical reactions and pathways involving mannosyl diphosphorylinositol ceramide, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group which contains two phosphoryl (-P(O)=) groups and a mannose derivative. tmpzr1t_l9r_go_relaxed.owl M(IP)2C metabolism|M(IP)2C metabolic process|mannosyl diphosphorylinositol ceramide metabolism biological_process owl:Class GO:0000315 biolink:NamedThing organellar large ribosomal subunit The larger of the two subunits of an organellar ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010424 biolink:NamedThing DNA methylation on cytosine within a CG sequence The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule. tmpzr1t_l9r_go_relaxed.owl cytosine methylation within a CG sequence biological_process owl:Class GO:0102931 biolink:NamedThing (Z,E)-alpha- farnesene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (Z,E)-alpha-farnesene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8931 molecular_function owl:Class GO:0050469 biolink:NamedThing sabinene-hydrate synthase activity Catalysis of the reaction: geranyl diphosphate + H(2)O = diphosphate + sabinene hydrate. tmpzr1t_l9r_go_relaxed.owl sabinene hydrate cyclase activity|geranyl-diphosphate diphosphate-lyase (cyclizing, sabinene-hydrate-forming) KEGG_REACTION:R02006|MetaCyc:4.2.3.11-RXN|EC:4.2.3.11|RHEA:19565 molecular_function owl:Class GO:0008791 biolink:NamedThing arginine N-succinyltransferase activity Catalysis of the reaction: succinyl-CoA + L-arginine = CoA + N2-succinyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl arginine and ornithine N(2)-succinyltransferase activity|arginine and ornithine N2-succinyltransferase activity|AST activity|AstA|arginine succinyltransferase activity|succinyl-CoA:L-arginine 2-N-succinyltransferase activity|succinyl-CoA:L-arginine N2-succinyltransferase activity|AOST activity EC:2.3.1.109|MetaCyc:ARGININE-N-SUCCINYLTRANSFERASE-RXN|RHEA:15185 molecular_function owl:Class GO:0042380 biolink:NamedThing hydroxymethylbutenyl pyrophosphate reductase activity Catalysis of the formation of both isopentenyl pyrophosphate and dimethylallyl pyrophosphate from (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate. tmpzr1t_l9r_go_relaxed.owl (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) molecular_function owl:Class GO:0060023 biolink:NamedThing soft palate development The biological process whose specific outcome is the progression of the soft palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate. tmpzr1t_l9r_go_relaxed.owl palatum molle development|velum palatum development biological_process owl:Class GO:1900275 biolink:NamedThing negative regulation of phospholipase C activity Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase C activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of lecithinase C activity|down-regulation of lecithinase C activity|inhibition of phospholipase C activity|downregulation of lipophosphodiesterase C|down-regulation of phosphatidase C|downregulation of phospholipase C activity|negative regulation of lipophosphodiesterase C|downregulation of lecithinase C activity|inhibition of phosphatidase C|down-regulation of lipophosphodiesterase C|negative regulation of phosphatidase C|downregulation of phosphatidase C|down-regulation of phospholipase C activity|inhibition of lecithinase C activity|down regulation of phosphatidase C|down regulation of lecithinase C activity|inhibition of lipophosphodiesterase C|down regulation of phospholipase C activity|down regulation of lipophosphodiesterase C rl 2012-04-04T01:19:10Z biological_process owl:Class GO:0050635 biolink:NamedThing acridone synthase activity Catalysis of the reaction: N-methylanthranilyl-CoA + 3 H(+) + 3 malonyl-CoA = 1,3-dihydroxy-N-methylacridone + 3 CO(2) + 4 CoA + H(2)O. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:N-methylanthraniloyl-CoA malonyltransferase (cyclizing) KEGG_REACTION:R07250|EC:2.3.1.159|RHEA:22224|MetaCyc:2.3.1.159-RXN molecular_function owl:Class GO:0034683 biolink:NamedThing integrin alphav-beta3 complex An integrin complex that comprises one alphav subunit and one beta3 subunit. tmpzr1t_l9r_go_relaxed.owl alphav-beta3 integrin complex|ITGAV-ITGB3 complex cellular_component owl:Class GO:0036339 biolink:NamedThing lymphocyte adhesion to endothelial cell of high endothelial venule The attachment of a lymphocyte to an endothelial cell of a high endothelial venule (HEV) via adhesion molecules. A HEV cell is an endothelial cell that is cuboidal, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream. tmpzr1t_l9r_go_relaxed.owl lymphocyte adhesion to HEV cell|lymphocyte adhesion to high endothelial venule For the transition of leukocytes from rolling to adhered, consider instead annotating to 'leukocyte adhesive activation ; GO:0050902'. bf 2012-09-10T16:00:23Z biological_process owl:Class GO:0047646 biolink:NamedThing alkanal monooxygenase (FMN-linked) activity Catalysis of the reaction: R-CHO + reduced FMN + O2 = R-COOH + FMN + H2O + light. tmpzr1t_l9r_go_relaxed.owl alkanal,reduced-FMN:oxygen oxidoreductase (1-hydroxylating, luminescing)|bacterial luciferase activity|aldehyde monooxygenase activity|vibrio fischeri luciferase activity RHEA:17181|EC:1.14.14.3|MetaCyc:ALKANAL-MONOOXYGENASE-FMN-LINKED-RXN molecular_function owl:Class GO:0110093 biolink:NamedThing nucleus lagging edge The area of a motile nucleus furthest from the direction of movement. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-14T22:56:12Z cellular_component owl:Class GO:0035380 biolink:NamedThing very long-chain-3-hydroxyacyl-CoA dehydrogenase activity Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD(P)+ = 3-oxoacyl-CoA + NAD(P)H + H+, where the acyl group is a very long-chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very-long-chain-3-hydroxyacyl-CoA dehydrogenase activity bf 2010-03-18T11:23:05Z molecular_function owl:Class GO:1990265 biolink:NamedThing platelet-derived growth factor complex A protein complex consisting of two chains of platelet-derived growth factor (PDGF) subunits. PDGF dimers bind to PDGF receptors in the plasma membrane and induce receptor dimerisation and activation. PDGFs are involved in a wide variety of signalling processes. PDGFs are found in all vertebrates where at least 2 different chains (A and B) exist. In human (and other mammals), four types of PDGF chains (A, B, C, and D) are known which form five different dimers (AA, AB, BB, CC and DD). tmpzr1t_l9r_go_relaxed.owl PDGF-BB dimer|PDGF-CC dimer|PDGF-AB dimer|PDGF-AA dimer|PDGF complex|PDGF-DD dimer An example of this is PDGFA in human (P04085) in PMID:20534510 (inferred from direct assay). bhm 2014-01-09T16:09:11Z cellular_component owl:Class GO:0046490 biolink:NamedThing isopentenyl diphosphate metabolic process The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. tmpzr1t_l9r_go_relaxed.owl IPP metabolism|isopentenyl diphosphate metabolism|IPP metabolic process|isopentenyl pyrophosphate metabolism|isopentenyl pyrophosphate metabolic process biological_process owl:Class GO:0060074 biolink:NamedThing synapse maturation The process that organizes a synapse so that it attains its fully functional state. Synaptic maturation plays a critical role in the establishment of effective synaptic connections in early development. tmpzr1t_l9r_go_relaxed.owl synaptic maturation biological_process owl:Class GO:0106142 biolink:NamedThing rRNA (adenine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + adenine(645) in 25S rRNA = S-adenosyl-L-homocysteine + N(1)-methyladenine(645) in 25S rRNA. tmpzr1t_l9r_go_relaxed.owl 25S rRNA (adenine(645)-N(1))-methyltransferase|25S rRNA m(1)A(645) methyltransferase RHEA:43792|EC:2.1.1.287 The m(1)A modification at position 645 in the large rRNA is highly conserved in eukaryotes. hjd 2018-08-22T20:13:21Z molecular_function owl:Class GO:0007425 biolink:NamedThing epithelial cell fate determination, open tracheal system The cell fate determination process in which a cell becomes capable of differentiating autonomously into an epithelial cell within an open tracheal system regardless of its environment; upon determination, the cell fate cannot be reversed. Tracheal cells are set aside as 10 clusters of approximately 80 cells on each side of the embryo (termed tracheal placodes). An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl tracheal cell fate determination|tracheal epithelial cell fate determination|tracheal placode cell fate determination GO:0046846 biological_process owl:Class GO:0000825 biolink:NamedThing inositol tetrakisphosphate 6-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl inositol 1,3,4,5-tetrakisphosphate 6-kinase activity|1D-myo-inositol-tetrakisphosphate 6-kinase activity Reactome:R-HSA-1855206|MetaCyc:RXN-7184 molecular_function owl:Class GO:1990641 biolink:NamedThing response to iron ion starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of iron ion. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-11T18:43:28Z biological_process owl:Class GO:0102475 biolink:NamedThing 2-hydroxyeriodictyol 6C-glucoside dehydratase activity Catalysis of the reaction: 6C-beta-D-glucosyl-2-hydroxyeriodictyol <=> isoorientin + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14081 molecular_function owl:Class GO:0061408 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to heat stress Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T11:50:30Z biological_process owl:Class GO:1990435 biolink:NamedThing upper tip-link density An electron-dense plaque at the upper end of a stereocilia tip link that provides the anchor in the stereocilia membrane on the side of the stereocilium where the tip link ends. tmpzr1t_l9r_go_relaxed.owl UTLD sl 2014-07-30T16:36:32Z cellular_component owl:Class GO:1902091 biolink:NamedThing negative regulation of fumagillin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of fumagillin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl downregulation of fumagillin formation|down-regulation of fumagillin synthesis|downregulation of fumagillin biosynthesis|down regulation of fumagillin biosynthesis|inhibition of fumagillin formation|down-regulation of fumagillin biosynthetic process|downregulation of fumagillin synthesis|downregulation of fumagillin biosynthetic process|down-regulation of fumagillin anabolism|down regulation of fumagillin formation|negative regulation of fumagillin anabolism|down-regulation of fumagillin formation|inhibition of fumagillin biosynthesis|inhibition of fumagillin biosynthetic process|negative regulation of fumagillin biosynthesis|down regulation of fumagillin synthesis|negative regulation of fumagillin synthesis|inhibition of fumagillin anabolism|inhibition of fumagillin synthesis|downregulation of fumagillin anabolism|negative regulation of fumagillin formation|down regulation of fumagillin anabolism|down-regulation of fumagillin biosynthesis|down regulation of fumagillin biosynthetic process di 2013-04-27T03:45:04Z biological_process owl:Class GO:0070834 biolink:NamedThing phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-N-dimethylethanolamine The phosphatidylcholine biosynthetic process that begins with two N-methylations with phospho-base phosphoethanolamine and phospho-N-methylethanolamine, followed by a downstream N-methylation on phosphatidyl-base phosphatidyl-N-dimethylethanolamine; the process ends with the conversion of a phosphatidyl-N-dimethylethanolamine to a phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY4FS-4 mah 2009-07-29T03:54:47Z biological_process owl:Class GO:0071906 biolink:NamedThing CRD domain binding Binding to a CRD (context dependent regulatory) domain, a domain of about 130 residues that is the most divergent region among the LEF/TCF proteins. tmpzr1t_l9r_go_relaxed.owl context dependent regulatory domain binding mah 2010-09-21T04:08:53Z molecular_function owl:Class GO:0052913 biolink:NamedThing 16S rRNA (guanine(966)-N(2))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(966) in 16S rRNA = N(2)-methylguanosine(966) in 16S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.171|RHEA:23548|KEGG_REACTION:R07234|MetaCyc:RXN0-6515 molecular_function owl:Class GO:0050073 biolink:NamedThing macrolide 2'-kinase activity Catalysis of the reaction: ATP + oleandomycin = ADP + 2 H(+) + oleandomycin 2'-O-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:macrolide 2'-O-phosphotransferase activity EC:2.7.1.136|KEGG_REACTION:R03780|MetaCyc:MACROLIDE-2-KINASE-RXN|RHEA:18333 molecular_function owl:Class GO:1990465 biolink:NamedThing aldehyde oxygenase (deformylating) activity Catalysis of the reaction a long-chain aldehyde + O(2) + 2 NADPH = an alkane + formate + H(2)O + 2 NADP(+). tmpzr1t_l9r_go_relaxed.owl EC:4.1.99.5|RHEA:21440 tt 2014-08-25T15:16:43Z molecular_function owl:Class GO:0070023 biolink:NamedThing interleukin-12-interleukin-12 receptor complex A protein complex that is formed by the association of a heterodimeric interleukin-12 receptor complex with an interleukin-12 heterodimer. tmpzr1t_l9r_go_relaxed.owl IL12B-IL12RB1-IL12RB2 complex|IL12-IL12 receptor complex cellular_component owl:Class GO:0102064 biolink:NamedThing gamma-curcumene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> gamma-curcumene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.94|MetaCyc:RXN-10599|RHEA:32031 molecular_function owl:Class GO:1905308 biolink:NamedThing cellular response to miconazole Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a miconazole stimulus. tmpzr1t_l9r_go_relaxed.owl al 2016-07-06T11:55:30Z biological_process owl:Class GO:0034396 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to iron Any process that stops, prevents or reduces the rate of transcription from an RNA polymerase II promoter in response to an iron stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from Pol II promoter in response to iron|down regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of transcription from RNA polymerase II promoter in response to iron biological_process owl:Class GO:0033466 biolink:NamedThing trans-zeatin biosynthetic process The chemical reactions and pathways resulting in the formation of trans-zeatin, (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. tmpzr1t_l9r_go_relaxed.owl trans-zeatin anabolism|trans-zeatin synthesis|trans-zeatin biosynthesis|trans-zeatin formation MetaCyc:PWY-2681 biological_process owl:Class GO:0090537 biolink:NamedThing CERF complex An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2L in mammals, which contain two ISWI homologs) and a CECR2 homolog. In mammals, CERF is involved in regulation of transcription from RNA polymerase II promoters. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-11T14:07:14Z cellular_component owl:Class GO:0036020 biolink:NamedThing endolysosome membrane The lipid bilayer surrounding an endolysosome. An endolysosome is a transient hybrid organelle formed by fusion of a late endosome with a lysosome. tmpzr1t_l9r_go_relaxed.owl endolysosomal membrane bf 2011-10-13T04:32:00Z cellular_component owl:Class GO:0036488 biolink:NamedThing CHOP-C/EBP complex A heterodimeric protein complex that is composed of the transcription factor CHOP (GADD153) and a member of the C/EBP family of transcription factors. tmpzr1t_l9r_go_relaxed.owl GADD153-C/EBP-alpha complex|CHOP-C/EBP dimer|GADD153-C/EBP complex|CHOP-C/EBP heterodimer bf 2014-11-06T13:18:49Z cellular_component owl:Class GO:0033358 biolink:NamedThing UDP-L-arabinose biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-L-arabinose, uridinediphosphoarabinose, a substance composed of arabinose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-L-arabinose formation|UDP-L-arabinose biosynthesis|UDP-L-arabinose synthesis|UDP-L-arabinose anabolism MetaCyc:PWY-82|MetaCyc:PWY-63 biological_process owl:Class GO:0002277 biolink:NamedThing myeloid dendritic cell activation involved in immune response The change in morphology and behavior of a myeloid dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl myeloid dendritic cell activation during immune response biological_process owl:Class GO:0030746 biolink:NamedThing isoflavone 4'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + isoflavone = S-adenosyl-L-homocysteine + 4'-O-methylisoflavone. tmpzr1t_l9r_go_relaxed.owl 4'-hydroxyisoflavone methyltransferase activity|S-adenosyl-L-methionine:isoflavone 4'-O-methyltransferase activity|isoflavone O-methyltransferase activity|isoflavone methyltransferase activity MetaCyc:ISOFLAVONE-4-O-METHYLTRANSFERASE-RXN|RHEA:31739|EC:2.1.1.46 molecular_function owl:Class GO:0061040 biolink:NamedThing female gonad morphogenesis The process in which a female gonad is generated and organized. tmpzr1t_l9r_go_relaxed.owl ovary morphogenesis dph 2010-02-22T11:29:28Z biological_process owl:Class GO:0043811 biolink:NamedThing phosphate:acyl-[acyl carrier protein] acyltransferase activity Catalysis of the reaction: acyl-[acyl-carrier protein] + orthophosphate = acyl phosphate + [acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045246 biolink:NamedThing cytosolic tricarboxylic acid cycle enzyme complex Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle. tmpzr1t_l9r_go_relaxed.owl tricarboxylic acid cycle enzyme complex|TCA cycle enzyme complex cellular_component owl:Class GO:0014716 biolink:NamedThing skeletal muscle satellite stem cell asymmetric division involved in skeletal muscle regeneration Skeletal muscle satellite cell asymmetric division that occurs during a process in which damaged muscle tissue is being rebuilt. tmpzr1t_l9r_go_relaxed.owl satellite cell asymmetric division involved in skeletal muscle regeneration Occurrence of this process outside of the context of muscle repair is probably very rare, so there is a good case for merging this with the parent class. biological_process owl:Class GO:0086077 biolink:NamedThing gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from an AV node cell to a bundle of His cell. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl gap junction channel activity involved in atrioventricular node cell-bundle of His cell electrical coupling dph 2011-11-22T10:29:53Z molecular_function owl:Class GO:0021914 biolink:NamedThing negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling that is involved in the patterns of cell differentiation in the ventral spinal cord. tmpzr1t_l9r_go_relaxed.owl inhibition of smoothened signaling pathway in ventral spinal cord patterning|down-regulation of smoothened signaling pathway in ventral spinal cord patterning|negative regulation of hedgehog signaling pathway involved in ventral spinal cord patterning|negative regulation of hh signaling pathway involved in ventral spinal cord patterning|down regulation of smoothened signaling pathway in ventral spinal cord patterning|downregulation of smoothened signaling pathway in ventral spinal cord patterning|negative regulation of smoothened signalling pathway in ventral spinal cord patterning biological_process owl:Class GO:1903492 biolink:NamedThing response to acetylsalicylate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aspirin (acetylsalicylate) stimulus. Aspirin is a non-steroidal anti-inflammatory drug with moA cyclooxygenase inhibitor activity. tmpzr1t_l9r_go_relaxed.owl hp 2014-09-25T10:58:23Z biological_process owl:Class GO:0043444 biolink:NamedThing acetone catabolic process The chemical reactions and pathways resulting in the breakdown of acetone, propan-2-one. tmpzr1t_l9r_go_relaxed.owl 2-propanone catabolic process|acetone degradation|2-propanone catabolism|dimethyl ketone catabolic process|acetone catabolism|propan-2-one catabolism|propan-2-one catabolic process|dimethyl ketone catabolism|acetone breakdown biological_process owl:Class GO:1902857 biolink:NamedThing positive regulation of non-motile cilium assembly Any process that activates or increases the frequency, rate or extent of non-motile cilium assembly. tmpzr1t_l9r_go_relaxed.owl up-regulation of nonmotile primary cilium assembly|activation of sensory cilium assembly|up regulation of sensory cilium assembly|upregulation of nonmotile primary cilia assembly|positive regulation of nonmotile primary cilium assembly|upregulation of sensory cilium biogenesis|positive regulation of immotile primary cilium assembly|up regulation of sensory cilium biogenesis|up regulation of nonmotile primary cilia assembly|activation of immotile primary cilium assembly|positive regulation of sensory cilium biogenesis|upregulation of immotile primary cilium assembly|up regulation of immotile primary cilium assembly|positive regulation of nonmotile primary cilia assembly|activation of nonmotile primary cilia assembly|activation of nonmotile primary cilium assembly|up regulation of nonmotile primary cilium assembly|upregulation of nonmotile primary cilium assembly|upregulation of sensory cilium assembly|up-regulation of immotile primary cilium assembly|activation of sensory cilium biogenesis|up-regulation of sensory cilium biogenesis|up-regulation of nonmotile primary cilia assembly|up-regulation of sensory cilium assembly|positive regulation of sensory cilium assembly kmv 2014-04-02T15:42:31Z biological_process owl:Class GO:1990079 biolink:NamedThing cartilage homeostasis A tissue homeostatic process involved in the maintenance of an internal equilibrium within cartilage, including control of cellular proliferation and death and control of metabolic function. tmpzr1t_l9r_go_relaxed.owl negative regulation of cartilage homeostasis|positive regulation of cartilage homeostasis|regulation of cartilage homeostasis hjd 2013-04-29T20:10:15Z GO:1902094|GO:1902095|GO:1902096 biological_process owl:Class GO:0009879 biolink:NamedThing determination of radial symmetry The establishment of an organism's body plan or a part of an organism such that it is symmetric around a central axis. tmpzr1t_l9r_go_relaxed.owl determination of radial asymmetry biological_process owl:Class GO:0036085 biolink:NamedThing GDP-fucose import into Golgi lumen The directed movement of GDP-fucose into the Golgi lumen. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-fucose transport into Golgi lumen|GDP-fucose transport across Golgi membrane|GDP-fucose import into Golgi bf 2011-12-21T01:52:10Z biological_process owl:Class GO:0015783 biolink:NamedThing GDP-fucose transmembrane transport The directed movement of GDP-fucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl GDP-fucose transport biological_process owl:Class GO:0038123 biolink:NamedThing toll-like receptor TLR1:TLR2 signaling pathway A series of molecular signals initiated by the binding of a heterodimeric TLR1:TLR2 complex to one of it's physiological ligands, followed by transmission of the signal by the activated receptor, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl toll-like receptor TLR1:TLR2 signalling pathway|TLR2:TLR1 signaling pathway bf 2012-03-23T10:20:13Z biological_process owl:Class GO:1901116 biolink:NamedThing cephamycin C metabolic process The chemical reactions and pathways involving cephamycin C. tmpzr1t_l9r_go_relaxed.owl cephamycin C metabolism yaf 2012-07-11T03:06:51Z biological_process owl:Class GO:0045711 biolink:NamedThing positive regulation of adult salivary gland boundary specification Any process that activates or increases the frequency, rate or extent of salivary gland determination in an adult organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of adult salivary gland determination|upregulation of adult salivary gland determination|up regulation of adult salivary gland determination|stimulation of adult salivary gland determination|positive regulation of adult salivary gland determination|activation of adult salivary gland determination biological_process owl:Class GO:0018406 biolink:NamedThing protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan The glycosylation of a peptidyl-tryptophan residue by the transfer of alpha-mannopyranose from dolichyl-activated mannose to the indole ring. tmpzr1t_l9r_go_relaxed.owl protein amino acid C-linked mannosylation|protein amino acid C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan RESID:AA0217 GO:0032004 biological_process owl:Class GO:0018317 biolink:NamedThing protein C-linked glycosylation via tryptophan The glycosylation of a carbon atom of a peptidyl-tryptophan residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid C-linked glycosylation via tryptophan biological_process owl:Class GO:0031719 biolink:NamedThing type 2 cannabinoid receptor binding Binding to a type 2 cannabinoid receptor. tmpzr1t_l9r_go_relaxed.owl type 2 cannabinoid receptor ligand molecular_function owl:Class GO:0031717 biolink:NamedThing cannabinoid receptor binding Binding to a cannabinoid receptor. tmpzr1t_l9r_go_relaxed.owl cannabinoid receptor ligand molecular_function owl:Class GO:0034828 biolink:NamedThing 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate hydrolase activity Catalysis of the reaction: 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate + H2O = 2-hydroxydec-2,4-diene-1,10-dioate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1172 molecular_function owl:Class GO:0102148 biolink:NamedThing N-acetyl-beta-D-galactosaminidase activity Catalysis of the reaction: H2O + an N-acetyl-beta-D-galactosalaminyl-[glycan] = N-acetyl-beta-D-galactosamine + a glycan. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.52|MetaCyc:RXN-11622 molecular_function owl:Class GO:0042904 biolink:NamedThing 9-cis-retinoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of 9-cis-retinoic acid, a metabolically active vitamin A derivative. tmpzr1t_l9r_go_relaxed.owl 9-cis-retinoic acid formation|9-cis-retinoic acid synthesis|9-cis-retinoic acid anabolism|9-cis-retinoic acid biosynthesis biological_process owl:Class GO:0005519 biolink:NamedThing cytoskeletal regulatory protein binding Binding to a protein involved in modulating the reorganization of the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098514 biolink:NamedThing detection of high humidity stimulus involved in sensory perception The series of events in which a high humidity stimulus is detected and converted into a molecular signal as a part of the sensory detection of high humidity. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:20:54Z biological_process owl:Class GO:0060235 biolink:NamedThing lens induction in camera-type eye Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102457 biolink:NamedThing cyanidin 3-O-glucoside 7-O-glucosyltransferase (vanilloyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-vanilloyl-beta-D-glucose <=> H+ + cyanidin 3,7-di-O-beta-D-glucoside betaine + vanillate. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.300|RHEA:35431|MetaCyc:RXN-13969 molecular_function owl:Class GO:1990965 biolink:NamedThing cytosylglucuronate decarboxylase activity Catalysis of the reaction: cytosylglucuronic acid + H(+) = cytosylarabinopyranose + CO(2). tmpzr1t_l9r_go_relaxed.owl This enzymatic activity was shown to be involved in the bacterial blasticidin S biosynthetic pathway. pr 2016-06-09T13:05:27Z molecular_function owl:Class GO:0051670 biolink:NamedThing inulinase activity Catalysis of the endohydrolysis of 2,1-beta-D-fructosidic linkages in inulin. tmpzr1t_l9r_go_relaxed.owl indoinulinase activity|endo-inulinase activity|exoinulinase activity|inulase activity|2,1-beta-D-fructan fructanohydrolase activity MetaCyc:3.2.1.7-RXN|EC:3.2.1.7 molecular_function owl:Class GO:0032047 biolink:NamedThing mitosome A double-membrane-bounded organelle that functions in iron-sulfur protein maturation; evolutionarily derived from mitochondria. The mitosome has been detected only in anaerobic or microaerophilic organisms that do not have mitochondria, such as Entamoeba histolytica, Giardia intestinalis and several species of Microsporidia. These organisms are not capable of gaining energy from oxidative phosphorylation, which is normally performed by mitochondria. tmpzr1t_l9r_go_relaxed.owl crypton Wikipedia:Mitosome In Giardia species, mitosomes are sometimes present between the two nuclei. cellular_component owl:Class GO:0070995 biolink:NamedThing NADPH oxidation A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADPH, to the oxidized form, NADP. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide phosphate dehydrogenation|NADP (reduced) oxidation|NADP (reduced) dehydrogenation|reduced NADP oxidation|reduced nicotinamide adenine dinucleotide phosphate oxidation|NADPH dehydrogenation|reduced NADP dehydrogenation mah 2009-11-03T12:02:15Z biological_process owl:Class GO:0061990 biolink:NamedThing beta-ketodecanoyl-[acyl-carrier-protein] synthase activity Catalysis of the reaction: octanoyl-CoA + a malonyl-[acyl-carrier protein] = a 3-oxodecanoyl-[acyl-carrier protein] + CoA + CO2. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13613|RHEA:42264 dph 2018-02-15T22:29:03Z molecular_function owl:Class GO:0090023 biolink:NamedThing positive regulation of neutrophil chemotaxis Any process that increases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:12:23Z biological_process owl:Class GO:0016732 biolink:NamedThing oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces dinitrogen. tmpzr1t_l9r_go_relaxed.owl EC:1.18.6.- molecular_function owl:Class GO:1990544 biolink:NamedThing mitochondrial ATP transmembrane transport The process in which ATP is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:43:33Z biological_process owl:Class GO:0002187 biolink:NamedThing mitochondrial creatine kinase complex An octomeric protein complex having creatine kinase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2011-06-14T02:15:29Z cellular_component owl:Class GO:0070736 biolink:NamedThing protein-glycine ligase activity, initiating Catalysis of the posttranslational transfer of a glycine residue to the gamma-carboxyl group(s) of one or more specific glutamate residues on a target protein. tmpzr1t_l9r_go_relaxed.owl protein glycylase activity, initiating mah 2009-06-19T01:56:32Z molecular_function owl:Class GO:0106001 biolink:NamedThing intestinal hexose absorption Uptake of hexoses, notably D-glucose, fructose, and galactose, into the blood by absorption from the small intestine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044692 biolink:NamedThing exoribonuclease activator activity Binds to and increases the activity of an exoribonuclease. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-15T15:13:57Z molecular_function owl:Class GO:0098645 biolink:NamedThing collagen network A supramolecular complex that consists of collagen triple helices associated to form a network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051262 biolink:NamedThing protein tetramerization The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits. tmpzr1t_l9r_go_relaxed.owl protein tetramer biosynthetic process|protein tetramer formation|protein tetramer biosynthesis|protein tetramer assembly biological_process owl:Class GO:0031863 biolink:NamedThing prostaglandin D2 receptor binding Binding to a prostaglandin D2 receptor. tmpzr1t_l9r_go_relaxed.owl prostaglandin D2 receptor ligand|prostanoid DP receptor binding molecular_function owl:Class GO:1902958 biolink:NamedThing positive regulation of mitochondrial electron transport, NADH to ubiquinone Any process that activates or increases the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone. tmpzr1t_l9r_go_relaxed.owl upregulation of complex I (NADH to ubiquinone)|activation of oxidative phosphorylation, NADH to ubiquinone|up-regulation of complex I (NADH to ubiquinone)|up-regulation of mitochondrial electron transport, NADH to ubiquinone|positive regulation of complex I (NADH to ubiquinone)|up regulation of oxidative phosphorylation, NADH to ubiquinone|positive regulation of oxidative phosphorylation, NADH to ubiquinone|up regulation of mitochondrial electron transport, NADH to ubiquinone|upregulation of mitochondrial electron transport, NADH to ubiquinone|activation of mitochondrial electron transport, NADH to ubiquinone|up-regulation of oxidative phosphorylation, NADH to ubiquinone|activation of complex I (NADH to ubiquinone)|upregulation of oxidative phosphorylation, NADH to ubiquinone|up regulation of complex I (NADH to ubiquinone) dph 2014-05-02T15:30:24Z biological_process owl:Class GO:0090522 biolink:NamedThing vesicle tethering involved in exocytosis The initial, indirect interaction between a secretory vesicle membrane and a site of exocytosis in the plasma membrane. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to docking and fusion. tmpzr1t_l9r_go_relaxed.owl vesicle tethering to plasma membrane tb 2013-01-08T15:07:50Z biological_process owl:Class GO:0018005 biolink:NamedThing N-terminal peptidyl-glycine N-formylation The formylation of the N-terminal glycine of proteins to form the derivative N-formylglycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0057 biological_process owl:Class GO:0044108 biolink:NamedThing cellular alcohol biosynthetic process The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom, carried out at the level of an individual cell. tmpzr1t_l9r_go_relaxed.owl jl 2009-07-15T01:38:25Z biological_process owl:Class GO:0090540 biolink:NamedThing bacterial cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as it occurs in certain types of bacteria, mainly Acetobacter, Sarcina ventriculi and Agrobacteria. tmpzr1t_l9r_go_relaxed.owl bacterial cellulose biosynthesis tb 2013-02-11T16:32:44Z biological_process owl:Class GO:1903192 biolink:NamedThing sesquarterpene metabolic process The chemical reactions and pathways involving sesquarterpene. tmpzr1t_l9r_go_relaxed.owl sesquarterpene metabolism tt 2014-07-16T17:04:47Z biological_process owl:Class GO:1990257 biolink:NamedThing piccolo-bassoon transport vesicle A cytoplasmic dense-core vesicle that transports a range of proteins including piccolo, bassoon, N-cadherin and syntaxin. The transported proteins may be associated with the external side of the vesicle, rather than being contained within the vesicle, therefore forming an aggregate of vesicle and proteins. Piccolo-bassoon transport vesicles (or PTVs) range in size from approximately 80 nm in diameter for dense core vesicles to 130 nm by 220 nm in area for aggregates. They are packaged via the trans-Golgi network before being transported through the axon. tmpzr1t_l9r_go_relaxed.owl PTV pr 2013-12-19T14:12:09Z cellular_component owl:Class GO:0009386 biolink:NamedThing translational attenuation Translational attenuation is a regulatory mechanism analogous to ribosome-mediated transcriptional attenuation. The system requires the presence of a short ORF, called a leader peptide, encoded in the mRNA upstream of the ribosome-binding site and start codon of the gene whose translation is to be regulated. Certain conditions, such as presence of the antibiotic tetracycline in bacteria or amino acid starvation, may cause slowing or stalling of the ribosome translating the leader peptide. The stalled ribosome masks a region of the mRNA and affects which of two alternative mRNA folded structures will form, therefore controlling whether or not a ribosome will bind and initiate translation of the downstream gene. Translational attenuation is analogous to ribosome-mediated transcriptional attenuation, in which mRNA remodeling caused by ribosome stalling regulates transcriptional termination rather than translational initiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102410 biolink:NamedThing quercetin-4',3-O-glucosyltransferase activity Catalysis of the reaction: quercetin 4'-O-glucoside + UDP-alpha-D-glucose(2-) <=> quercetin 3,4'-O-diglucoside + UDP(3-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13765 molecular_function owl:Class GO:0015186 biolink:NamedThing L-glutamine transmembrane transporter activity Enables the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl asparagine/glutamine permease activity molecular_function owl:Class GO:0052769 biolink:NamedThing beta-6-sulfate-N-acetylglucosaminidase activity Catalysis of the glycosidic cleavage of the terminal 2-acetamido-2-deoxy-beta-D-glucopyranoside 6-sulfate (6-SO3-GlcNAc) residue from sulfomucin, a sulfated mucin derivative. tmpzr1t_l9r_go_relaxed.owl sulfoglycosidase activity|sulfomucin beta-6-sulfate-N-acetylglucosaminidase activity|exosulfoglycosidase activity|beta-6-SO3-N-acetylglucosaminidase activity ai 2011-09-30T12:55:24Z molecular_function owl:Class GO:0150074 biolink:NamedThing positive regulation of protein-glutamine gamma-glutamyltransferase activity Any process that activates or increases the frequency, rate or extent of protein-glutamine gamma-glutamyltransferase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T10:08:19Z biological_process owl:Class GO:1900550 biolink:NamedThing N',N'',N'''-triacetylfusarinine C catabolic process The chemical reactions and pathways resulting in the breakdown of N',N'',N'''-triacetylfusarinine C. tmpzr1t_l9r_go_relaxed.owl N',N'',N'''-triacetylfusarinine C catabolism|N',N'',N'''-triacetylfusarinine C breakdown|N',N'',N'''-triacetylfusarinine C degradation di 2012-05-15T01:00:07Z biological_process owl:Class GO:1904906 biolink:NamedThing positive regulation of endothelial cell-matrix adhesion via fibronectin Any process that activates or increases the frequency, rate or extent of endothelial cell-matrix adhesion via fibronectin. tmpzr1t_l9r_go_relaxed.owl up regulation of endothelial cell-matrix adhesion via fibronectin|upregulation of endothelial cell-matrix adhesion via fibronectin|activation of endothelial cell-matrix adhesion via fibronectin|up-regulation of endothelial cell-matrix adhesion via fibronectin bc 2016-01-19T10:23:16Z biological_process owl:Class GO:0006201 biolink:NamedThing GMP catabolic process to IMP The chemical reactions and pathways resulting in the breakdown of guanosine monophosphate into other compounds, including inosine monophosphate. tmpzr1t_l9r_go_relaxed.owl GMP breakdown to IMP|GMP degradation to IMP biological_process owl:Class GO:0015964 biolink:NamedThing diadenosine triphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diadenosine triphosphate catabolism|diadenosine triphosphate degradation|diadenosine triphosphate breakdown biological_process owl:Class GO:0047929 biolink:NamedThing gluconate dehydratase activity Catalysis of the reaction: D-gluconate = 2-dehydro-3-deoxy-D-gluconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-gluconate hydro-lyase (2-dehydro-3-deoxy-D-gluconate-forming)|D-gluconate hydro-lyase activity|D-gluconate dehydratase activity EC:4.2.1.39|KEGG_REACTION:R01538|MetaCyc:GLUCONATE-DEHYDRATASE-RXN|RHEA:21612 molecular_function owl:Class GO:1990678 biolink:NamedThing histone H4-K16 deacetylation The modification of histone H4 by the removal of an acetyl group from lysine at position 16 of the histone. tmpzr1t_l9r_go_relaxed.owl al 2015-03-02T15:25:56Z biological_process owl:Class GO:0120015 biolink:NamedThing sterol transfer activity Removes a sterol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl sterol carrier activity|intermembrane sterol transfer activity https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T03:46:28Z molecular_function owl:Class GO:0004919 biolink:NamedThing interleukin-9 receptor activity Combining with interleukin-9 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-9 receptor activity|IL-9R molecular_function owl:Class GO:0052752 biolink:NamedThing reduced coenzyme F420:heterodisulfide oxidoreductase activity Catalysis of the reaction: reduced coenzyme F420 + CoB-S-S-CoM = coenzyme F420 + CoM-SH + CoB-SH. tmpzr1t_l9r_go_relaxed.owl F420H2:heterodisulfide oxidoreductase activity|coenzyme F420-dependent heterodisulfide oxidoreductase activity|F420-dependent heterodisulfide oxidoreductase activity ai 2011-09-21T04:21:16Z molecular_function owl:Class GO:0098622 biolink:NamedThing selenodiglutathione-disulfide reductase activity Catalysis of the reaction: H+ + selenodiglutathione + NADPH => gluthathioselenol + glutathione + NADP+. tmpzr1t_l9r_go_relaxed.owl RHEA:34927|Reactome:R-HSA-2408542 molecular_function owl:Class GO:1905151 biolink:NamedThing negative regulation of voltage-gated sodium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated sodium channel activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of voltage-gated sodium channel activity|inhibition of voltage-gated sodium ion channel activity|down-regulation of voltage-gated sodium ion channel activity|down regulation of voltage gated sodium channel activity|inhibition of voltage-gated sodium channel activity|down-regulation of voltage-sensitive sodium channel|down regulation of voltage-sensitive sodium channel|down-regulation of voltage gated sodium channel activity|downregulation of voltage-dependent sodium channel activity|downregulation of voltage gated sodium channel activity|down regulation of voltage-dependent sodium channel activity|negative regulation of voltage-sensitive sodium channel|negative regulation of voltage-dependent sodium channel activity|downregulation of voltage-sensitive sodium channel|downregulation of voltage-gated sodium channel activity|down regulation of voltage-gated sodium channel activity|downregulation of voltage-gated sodium ion channel activity|inhibition of voltage-dependent sodium channel activity|inhibition of voltage-sensitive sodium channel|negative regulation of voltage-gated sodium ion channel activity|down-regulation of voltage-dependent sodium channel activity|negative regulation of voltage gated sodium channel activity|down regulation of voltage-gated sodium ion channel activity|inhibition of voltage gated sodium channel activity sl 2016-04-15T21:47:49Z biological_process owl:Class GO:0098681 biolink:NamedThing synaptic ribbon A non-membrane bound, electron dense structure associated that extends perpendicular to the presynaptic membrane in ribbon synapses. The ribbon's surface is studded with small particles to which synaptic vesicles tether via fine filaments. The tethered vesicles function as a pool, several fold greater than the docked pool available for fast release, which supports sustained release of vesicles. Synaptic ribbons may be plate like or spherical. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T15:59:43Z cellular_component owl:Class GO:0001665 biolink:NamedThing alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + glycano-(1->3)-(N-acetyl-alpha-D-galactosaminyl)-glycoprotein = CMP + glycano-[(2->6)-alpha-N-acetylneuraminyl]-(N-acetyl-D-galactosaminyl)-glycoprotein. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate:glycano-1,3-(N-acetyl-alpha-D-galactosaminyl)-glycoprotein alpha-2,6-N-acetylneuraminyltransferase activity|GalNAc alpha-2,6-sialyltransferase I activity MetaCyc:2.4.99.3-RXN|Reactome:R-HSA-4084980|EC:2.4.99.3|Reactome:R-HSA-9603991|RHEA:11136 molecular_function owl:Class GO:0018600 biolink:NamedThing alpha-pinene dehydrogenase activity Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + myrtenol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0709|EC:1.14.-.- molecular_function owl:Class GO:0015838 biolink:NamedThing amino-acid betaine transport The directed movement of betaine, the N-trimethyl derivative of an amino acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl betaine transport biological_process owl:Class GO:2000391 biolink:NamedThing positive regulation of neutrophil extravasation Any process that activates or increases the frequency, rate or extent of neutrophil extravasation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-22T11:08:42Z biological_process owl:Class GO:1902678 biolink:NamedThing right caudal basal body Any ciliary basal body that is part of a right caudal flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl cilial basal body of right caudal cilium|ciliary basal body of right caudal flagellum|cilium basal body of right caudal cilium|right caudal flagellum ciliary basal body|microtubule basal body of right caudal flagellum|microtubule basal body of right caudal cilium|cilial basal body of right caudal flagellum|cilium basal body of right caudal flagellum|ciliary basal body of right caudal cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T15:02:56Z cellular_component owl:Class GO:0000737 biolink:NamedThing DNA catabolic process, endonucleolytic The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. tmpzr1t_l9r_go_relaxed.owl endonucleolytic DNA catabolism|endonucleolytic degradation of DNA|DNA degradation, endonucleolytic|DNA breakdown, endonucleolytic biological_process owl:Class GO:0072197 biolink:NamedThing ureter morphogenesis The process in which the anatomical structures of the ureter are generated and organized. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T02:24:55Z biological_process owl:Class GO:0071813 biolink:NamedThing lipoprotein particle binding Binding to a lipoprotein particle. A lipoprotein particle, also known as a lipoprotein, is a clathrate complex consisting of a lipid enwrapped in a protein host without covalent binding in such a way that the complex has a hydrophilic outer surface consisting of all the protein and the polar ends of any phospholipids. tmpzr1t_l9r_go_relaxed.owl plasma lipoprotein particle binding|plasma lipoprotein binding|lipoprotein binding mah 2010-09-06T03:16:01Z molecular_function owl:Class GO:0071814 biolink:NamedThing protein-lipid complex binding Binding to a protein-lipid complex, any macromolecular complex that contains both protein and lipid molecules. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-06T04:26:27Z molecular_function owl:Class GO:0140626 biolink:NamedThing opioid growth factor receptor signaling pathway The series of molecular signals generated as a consequence of an opioid growth factor receptor binding to its physiological ligand, opioid growth factor (OGF, met-enkephalin). The OGF-OGFr complex leads to the increase in the synthesis of the selective cyclin-dependent kinase (CDK) inhibitor proteins, p12 (POLD4) and p16 (CDKN2A). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21110 Wikipedia:OGFr|Wikipedia:Opioid_receptor Note that this term represents the activation of the zeta-opioid receptor. Do not confuse with GO:0038003 ; G protein-coupled opioid receptor signaling pathway, activated by the delta, kappa, mu, and nociceptin opioid receptors. pg 2021-03-18T08:30:43Z biological_process owl:Class GO:0034615 biolink:NamedThing GCH1 complex A protein complex that possesses GTP cyclohydrolase I activity. In E. coli and human, the complex is a homodecamer, and monomers are catalytically inactive. tmpzr1t_l9r_go_relaxed.owl GTP cyclohydrolase I complex cellular_component owl:Class GO:2000455 biolink:NamedThing regulation of T-helper 17 cell extravasation Any process that modulates the frequency, rate or extent of T-helper 17 cell extravasation. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-04T10:49:51Z biological_process owl:Class GO:0034643 biolink:NamedThing establishment of mitochondrion localization, microtubule-mediated The directed movement of the mitochondrion to a specific location, by a process involving microtubules. tmpzr1t_l9r_go_relaxed.owl microtubule-mediated mitochondrion localization|establishment of mitochondrion localisation, microtubule-mediated|mitochondrial localization, microtubule-mediated biological_process owl:Class GO:0014714 biolink:NamedThing myoblast fate commitment in head The process, taking place in the head, whereby the developmental fate of a cell becomes restricted such that it will develop into a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019342 biolink:NamedThing trypanothione biosynthetic process The chemical reactions and pathways resulting in the formation of trypanothione (N1,N6,-bis(glutathionyl)spermidine) in two steps from glutathione and spermidine via an N1- or N8-glutathionylspermidine intermediate. Trypanothione appears to be an essential redox intermediate in intracellular thiol redox regulation. It also plays a role in protecting against oxidative stress. tmpzr1t_l9r_go_relaxed.owl trypanothione biosynthesis|trypanothione anabolism|trypanothione synthesis|trypanothione formation MetaCyc:TRYPANOSYN-PWY biological_process owl:Class GO:1900184 biolink:NamedThing negative regulation of xanthone-containing compound biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of xanthone-containing compound biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of xanthone biosynthetic process|down regulation of xanthone-containing compound biosynthetic process|down-regulation of xanthone-containing compound biosynthesis|inhibition of xanthone-containing compound biosynthesis|down regulation of xanthone-containing compound formation|down regulation of xanthone-containing compound synthesis|down regulation of xanthone biosynthetic process|inhibition of xanthone biosynthesis|downregulation of xanthone biosynthetic process|downregulation of xanthone-containing compound formation|downregulation of xanthone-containing compound synthesis|negative regulation of xanthone-containing compound formation|inhibition of xanthone-containing compound formation|down-regulation of xanthone biosynthetic process|downregulation of xanthone-containing compound biosynthetic process|downregulation of xanthone biosynthesis|down-regulation of xanthone biosynthesis|negative regulation of xanthone-containing compound synthesis|down regulation of xanthone-containing compound biosynthesis|downregulation of xanthone-containing compound biosynthesis|down regulation of xanthone biosynthesis|inhibition of xanthone-containing compound synthesis|negative regulation of xanthone-containing compound anabolism|negative regulation of xanthone-containing compound biosynthesis|negative regulation of xanthone biosynthesis|negative regulation of xanthone biosynthetic process|inhibition of xanthone-containing compound anabolism|down-regulation of xanthone-containing compound synthesis|down regulation of xanthone-containing compound anabolism|negative regulation of xanthones anabolism|down-regulation of xanthone-containing compound biosynthetic process|down-regulation of xanthone-containing compound anabolism|downregulation of xanthone-containing compound anabolism|down-regulation of xanthone-containing compound formation|inhibition of xanthone-containing compound biosynthetic process di 2012-03-16T03:30:24Z biological_process owl:Class GO:0071653 biolink:NamedThing negative regulation of chemokine (C-C motif) ligand 1 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 1. tmpzr1t_l9r_go_relaxed.owl negative regulation of CCL1 production|negative regulation of T cell activation 3 production|negative regulation of TCA-3 production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0050117 biolink:NamedThing N-acetyl-beta-alanine deacetylase activity Catalysis of the reaction: N-acetyl-beta-alanine + H(2)O = beta-alanine + acetate. tmpzr1t_l9r_go_relaxed.owl N-acetyl-beta-alanine amidohydrolase activity RHEA:23212|EC:3.5.1.21|KEGG_REACTION:R00909|MetaCyc:N-ACETYL-BETA-ALANINE-DEACETYLASE-RXN molecular_function owl:Class GO:0048355 biolink:NamedThing root cap mucilage biosynthetic process The chemical reactions and pathways resulting in the formation of mucilage that occur in the root cap; mucilage is normally synthesized during root growth. tmpzr1t_l9r_go_relaxed.owl root cap mucilage anabolism|root cap mucilage formation|root cap mucilage biosynthesis|root cap mucilage synthesis biological_process owl:Class GO:0010192 biolink:NamedThing mucilage biosynthetic process The chemical reactions and pathways resulting in the formation of mucilage, a gelatinous substance secreted by plants. tmpzr1t_l9r_go_relaxed.owl mucilage anabolism|mucilage synthesis|mucilage biosynthesis|mucilage formation biological_process owl:Class GO:0016080 biolink:NamedThing synaptic vesicle targeting The process in which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061127 biolink:NamedThing negative regulation of positive chemotaxis to cAMP by DIF-1 Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-1. DIF-1 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:45:03Z biological_process owl:Class GO:0140296 biolink:NamedThing general transcription initiation factor binding Binding to a general transcription initiation factor, a protein that contributes to transcription start site selection and transcription initiation. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-28T12:48:06Z molecular_function owl:Class GO:0031262 biolink:NamedThing Ndc80 complex An outer kinetochore protein complex that is part of the KMN kinetochore network (also known as the NMS complex) providing the platform with which the plus ends of spindle microtubules directly interact to form stable kinetochore-microtubule attachments. A common subunit nomenclature is used from yeast to human: Ndc80, Nuf2, Spc24, and Spc25. tmpzr1t_l9r_go_relaxed.owl Nuf2-Ndc80 complex cellular_component owl:Class GO:1902716 biolink:NamedThing cell cortex of growing cell tip Any cell cortex that is part of a growing cell tip. tmpzr1t_l9r_go_relaxed.owl cell cortex of growing cell end mah 2014-02-24T15:46:57Z cellular_component owl:Class GO:1904156 biolink:NamedThing DN3 thymocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a DN3 thymocyte. A DN3 thymocyte is a CD4-,CD8- thymocyte that is also CD44+,CD25+. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-15T12:53:00Z biological_process owl:Class GO:0050468 biolink:NamedThing reticuline oxidase activity Catalysis of the reaction: (S)-reticuline + O(2) = (S)-scoulerine + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl BBE|(S)-reticuline:oxygen oxidoreductase (methylene-bridge-forming)|berberine bridge enzyme activity|tetrahydroprotoberberine synthase activity|berberine-bridge-forming enzyme activity MetaCyc:RETICULINE-OXIDASE-RXN|RHEA:19885|KEGG_REACTION:R03831|EC:1.21.3.3 molecular_function owl:Class GO:0070224 biolink:NamedThing sulfide:quinone oxidoreductase activity Catalysis of the reaction: hydrogen sulfide + a quinone = S0 + a hydroquinone. tmpzr1t_l9r_go_relaxed.owl sulphide:quinone oxidoreductase activity|sulfide-quinone reductase activity Reactome:R-HSA-1614665|MetaCyc:R17-RXN|RHEA:30239 molecular_function owl:Class GO:1903877 biolink:NamedThing 21-deoxycortisol binding Binding to 21-deoxycortisol. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:02:54Z molecular_function owl:Class GO:1990384 biolink:NamedThing hyaloid vascular plexus regression The developmental process in which the hyaloid vascular plexus is destroyed as a part of its normal progression. tmpzr1t_l9r_go_relaxed.owl hjd 2014-05-28T18:43:21Z biological_process owl:Class GO:0052155 biolink:NamedThing modulation by symbiont of host cell-mediated immune response Any process in which an organism modulates the frequency, rate or extent of any form of cell-based immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of host cell-based immune response|modulation by organism of cell-mediated immune response of other organism involved in symbiotic interaction GO:0052294 biological_process owl:Class GO:0022004 biolink:NamedThing midbrain-hindbrain boundary maturation during brain development A developmental process occurring after the brain has been specified along the neural axis that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052386 biolink:NamedThing cell wall thickening A type of cell wall modification in which the cell wall is reinforced and made thicker. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103041 biolink:NamedThing thiosulfate-thioredoxin sulfurtransferase activity Catalysis of the reaction: hydroxidodioxidosulfidosulfate + a reduced thioredoxin = sulfite + hydrogen sulfide + H+ + an oxidized thioredoxin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6385 molecular_function owl:Class GO:0044098 biolink:NamedThing DNA secretion by the type IV secretion system The controlled release of DNA by a cell, via the type IV secretion system. tmpzr1t_l9r_go_relaxed.owl DNA secretion via the type IV secretion system jl 2009-06-09T02:26:57Z biological_process owl:Class GO:0036243 biolink:NamedThing succinate-semialdehyde dehydrogenase (NADP+) activity Catalysis of the reaction: succinate semialdehyde + NADP+ + H2O = succinate + NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl NADP-dependent succinate-semialdehyde dehydrogenase activity|succinate semialdehyde:NADP+ oxidoreductase activity|succinic semialdehyde dehydrogenase (NADP+) activity|succinyl semialdehyde dehydrogenase (NADP+) activity RHEA:13213|EC:1.2.1.79 This function is similar to EC:1.2.1.24 [succinate-semialdehyde dehydrogenase (NAD+)], and EC:1.2.1.16 [succinate-semialdehyde dehydrogenase (NAD(P)+)], but is specific for NADP+. bf 2012-05-23T02:47:52Z molecular_function owl:Class GO:0016941 biolink:NamedThing natriuretic peptide receptor activity Combining with a natriuretic peptide and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018297 biolink:NamedThing protein-FAD linkage via 1'-(8alpha-FAD)-L-histidine The formation of a protein-FAD linkage via 1'-(8-alpha-FAD)-L-histidine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0221 biological_process owl:Class GO:0099157 biolink:NamedThing trans-synaptic signalling via exosome Transynaptic signaling in which the ligand is carried across the synapse by an exosome. tmpzr1t_l9r_go_relaxed.owl exosome mediated transynaptic signalling dos 2017-07-05T16:49:44Z biological_process owl:Class GO:0019703 biolink:NamedThing coenzyme A-peptidyl-cysteine covalent linking The covalent linkage of coenzyme A and peptidyl-cysteine to form L-cysteine coenzyme A disulfide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0306 biological_process owl:Class GO:0043485 biolink:NamedThing endosome to pigment granule transport The directed movement of substances from endosomes to pigment granules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055112 biolink:NamedThing delamination involved in gastrulation with mouth forming second The splitting or migration of one epithelial sheet into two involved in the process of deuterostomic gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046183 biolink:NamedThing L-idonate catabolic process The chemical reactions and pathways resulting in the breakdown of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose. tmpzr1t_l9r_go_relaxed.owl L-idonate degradation|L-idonate breakdown|L-idonate catabolism biological_process owl:Class GO:0003874 biolink:NamedThing 6-pyruvoyltetrahydropterin synthase activity Catalysis of the reaction: 7,8-dihydroneopterin 3'-triphosphate = 6-pyruvoyl-5,6,7,8-tetrahydropterin + H(+) + triphosphate. tmpzr1t_l9r_go_relaxed.owl 2-amino-4-oxo-6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydroxypteridine triphosphate lyase activity|PTPS activity|6-pyruvoyl tetrahydrobiopterin synthase activity|2-amino-4-oxo-6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydroxypteridine triphosphate-lyase (6-pyruvoyl-5,6,7,8-tetrahydropterin-forming) KEGG_REACTION:R04286|RHEA:22048|MetaCyc:4.2.3.12-RXN|Reactome:R-HSA-1474184|EC:4.2.3.12 molecular_function owl:Class GO:0009716 biolink:NamedThing flavonoid phytoalexin biosynthetic process The chemical reactions and pathways resulting in the formation of flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection. tmpzr1t_l9r_go_relaxed.owl flavonoid phytoalexin synthesis|flavonoid phytoalexin anabolism|flavonoid phytoalexin biosynthesis|flavonoid phytoalexin formation biological_process owl:Class GO:0040026 biolink:NamedThing positive regulation of vulval development Any process that activates or increases the frequency, rate or extent of development of the vulva. Vulval development is the process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult. tmpzr1t_l9r_go_relaxed.owl up regulation of vulval development|activation of vulval development|stimulation of vulval development|up-regulation of vulval development|upregulation of vulval development biological_process owl:Class GO:0040028 biolink:NamedThing regulation of vulval development Any process that modulates the frequency, rate or extent of development of the vulva. Vulval development is the process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904868 biolink:NamedThing telomerase catalytic core complex assembly The aggregation, arrangement and bonding together of a set of components to form a telomerase catalytic core complex. tmpzr1t_l9r_go_relaxed.owl telomerase catalytic core complex formation|TERT-TERC complex formation|TERT-TERC complex assembly rph 2015-12-18T10:02:45Z biological_process owl:Class GO:1905323 biolink:NamedThing telomerase holoenzyme complex assembly The aggregation, arrangement and bonding together of a set of components to form a telomerase holoenzyme complex. tmpzr1t_l9r_go_relaxed.owl telomerase holoenzyme complex formation mah 2016-07-18T10:38:14Z biological_process owl:Class GO:0044129 biolink:NamedThing positive regulation of development of symbiont in host Any process in which the symbiont activates or maintains its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont in host ; GO:0033666'. See also 'positive regulation of growth of symbiont in host ; GO:0044128'. jl 2009-08-04T02:25:41Z biological_process owl:Class GO:0004026 biolink:NamedThing alcohol O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an alcohol = CoA + an acetyl ester. tmpzr1t_l9r_go_relaxed.owl alcohol acetyltransferase activity|AATASE activity|acetyl-CoA:alcohol O-acetyltransferase activity EC:2.3.1.84|RHEA:17229|MetaCyc:ALCOHOL-O-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0016920 biolink:NamedThing pyroglutamyl-peptidase activity Catalysis of the release of the N-terminal pyroglutamyl group from a peptide or protein. tmpzr1t_l9r_go_relaxed.owl EC:3.4.19.- molecular_function owl:Class GO:1905601 biolink:NamedThing negative regulation of receptor-mediated endocytosis involved in cholesterol transport Any process that stops, prevents or reduces the frequency, rate or extent of receptor-mediated endocytosis involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|down-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|negative regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|down regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|inhibition of receptor-mediated endocytosis of LDL|downregulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|inhibition of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|inhibition of receptor-mediated endocytosis involved in cholesterol transport|down-regulation of receptor-mediated endocytosis of LDL|down-regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|down regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|negative regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|downregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|negative regulation of receptor-mediated endocytosis of LDL|down-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|downregulation of receptor-mediated endocytosis involved in cholesterol transport|down regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|downregulation of receptor-mediated endocytosis of LDL|down regulation of receptor-mediated endocytosis involved in cholesterol transport|downregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|down-regulation of receptor-mediated endocytosis involved in cholesterol transport|inhibition of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|down regulation of receptor-mediated endocytosis of LDL|inhibition of receptor-mediated endocytosis involved in intracellular cholesterol transport pr 2016-10-26T13:01:52Z biological_process owl:Class GO:0061207 biolink:NamedThing mesonephric juxtaglomerulus cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the juxtaglomerulus cells of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T12:54:08Z biological_process owl:Class GO:0102796 biolink:NamedThing protocatechualdehyde:oxygen oxidoreductase activity Catalysis of the reaction: 3,4-dihydroxybenzaldehyde + O2 + H2O <=> H+ + 3,4-dihydroxybenzoate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8091|EC:1.2.3.9 molecular_function owl:Class GO:0075503 biolink:NamedThing fusion of virus membrane with host macropinosome membrane Fusion of a viral membrane with a host macropinosome membrane, that occurs after internalization of the virus through the endosomal pathway, and results in release of the viral contents into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via macropinocytosis followed by membrane fusion with the endosome membrane|viral entry into host cell via macropinocytosis followed by membrane fusion with the host macropinosome membrane jl 2010-06-02T02:45:47Z biological_process owl:Class GO:0070356 biolink:NamedThing synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a complex A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Rab3a (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (STX1a, STX1b, SNAP25, RAB3a, SYT1, VAMP2)|STX1a-STX1b-SNAP25-RAB3a-SYT1-VAMP2 complex cellular_component owl:Class GO:1990324 biolink:NamedThing collagen type XXVI trimer A collagen homotrimer of alpha1(XXVI) chains. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-16T23:02:35Z cellular_component owl:Class GO:0080017 biolink:NamedThing alpha-humulene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = alpha-humulene + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:31895|EC:4.2.3.104|MetaCyc:RXN-8415 molecular_function owl:Class GO:0090692 biolink:NamedThing mitochondrial membrane scission site The site on the mitochondrial membrane where the separation of a single continuous mitochondrial membrane into two membranes occurs as a final step in mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T10:46:09Z cellular_component owl:Class GO:0034391 biolink:NamedThing regulation of smooth muscle cell apoptotic process Any process that modulates the frequency, rate, or extent of smooth muscle cell apoptotic process. tmpzr1t_l9r_go_relaxed.owl regulation of SMC apoptosis|regulation of smooth muscle cell apoptosis biological_process owl:Class GO:0044188 biolink:NamedThing host cell lysosomal membrane The lipid bilayer surrounding the host cell lysosome and separating its contents from the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T03:27:54Z cellular_component owl:Class GO:0061569 biolink:NamedThing UDP phosphorylation The process of introducing a phosphate group into UDP, uridine diphosphate, to produce UTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T12:59:32Z biological_process owl:Class GO:0021501 biolink:NamedThing prechordal plate formation The formation of the prechordal plate. The prechordal plate is a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050223 biolink:NamedThing protocatechuate decarboxylase activity Catalysis of the reaction: 3,4-dihydroxybenzoate + H(+) = catechol + CO(2). tmpzr1t_l9r_go_relaxed.owl 3,4-dihydrobenzoate decarboxylase activity|3,4-dihydroxybenzoate decarboxylase activity|3,4-dihydroxybenzoate carboxy-lyase (catechol-forming)|protocatechuate carboxy-lyase activity KEGG_REACTION:R00822|EC:4.1.1.63|RHEA:22416|MetaCyc:PROTOCATECHUATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0018954 biolink:NamedThing pentaerythritol tetranitrate metabolic process The chemical reactions and pathways involving pentaerythritol tetranitrate, C(CH2-O-NO2)4, a substance produced for use as an explosive and a vasodilator. tmpzr1t_l9r_go_relaxed.owl pentaerythritol tetranitrate metabolism UM-BBD_pathwayID:petn biological_process owl:Class GO:0033927 biolink:NamedThing glucan 1,4-alpha-maltohexaosidase activity Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in amylaceous polysaccharides, to remove successive maltohexaose residues from the non-reducing chain ends. tmpzr1t_l9r_go_relaxed.owl G6-amylase activity|1,4-alpha-D-glucan maltohexaohydrolase activity|maltohexaose-producing amylase activity|exo-maltohexaohydrolase activity MetaCyc:3.2.1.98-RXN|EC:3.2.1.98 molecular_function owl:Class GO:0015759 biolink:NamedThing beta-glucoside transport The directed movement of beta-glucosides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Beta-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in a beta configuration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099148 biolink:NamedThing regulation of synaptic vesicle docking Any process that modulates the frequency, rate or extent of synaptic vesicle docking. tmpzr1t_l9r_go_relaxed.owl dos 2017-07-05T13:10:10Z biological_process owl:Class GO:0048724 biolink:NamedThing epistomal sclerite development The process whose specific outcome is the progression of the epistomal sclerite over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034006 biolink:NamedThing amorpha-4,11-diene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = amorpha-4,11-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (amorpha-4,11-diene-forming) activity|amorphadiene synthase activity MetaCyc:4.2.3.24-RXN|EC:4.2.3.24|RHEA:18325|MetaCyc:RXN-8046|KEGG_REACTION:R07630 molecular_function owl:Class GO:0071831 biolink:NamedThing intermediate-density lipoprotein particle clearance The process in which a intermediate-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded. tmpzr1t_l9r_go_relaxed.owl IDL clearance mah 2010-09-08T11:26:12Z biological_process owl:Class GO:0009496 biolink:NamedThing plastoquinol--plastocyanin reductase activity Catalysis of the reaction: 2 H(+)[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H(+)[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane. tmpzr1t_l9r_go_relaxed.owl plastoquinol:oxidized-plastocyanin oxidoreductase activity|cytochrome b6f|plastoquinol-plastocyanin reductase activity|plastoquinol/plastocyanin oxidoreductase activity|cytochrome b6f complex activity MetaCyc:PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN|RHEA:22148|KEGG_REACTION:R03817|EC:7.1.1.6 molecular_function owl:Class GO:0031436 biolink:NamedThing BRCA1-BARD1 complex A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102798 biolink:NamedThing heptaldehyde:oxygen oxidoreductase activity Catalysis of the reaction: heptanal + O2 + H2O = H+ + heptanoate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl EC:1.2.3.1|MetaCyc:RXN-8094 molecular_function owl:Class GO:0032798 biolink:NamedThing Swi5-Sfr1 complex A conserved DNA recombinase mediator complex that contains two Swi5 monomers and one Sfr1 monomer in Schizosaccharomyces, or orthologs thereof (e.g. Sae3p and Mei5p in Saccharomyces). tmpzr1t_l9r_go_relaxed.owl Sae3-Mei5 complex|Swi5 complex Note that this term refers to Schizosaccharomyces pombe Swi5, which should not be confused with the unrelated Saccharomyces Swi5p. cellular_component owl:Class GO:0140489 biolink:NamedThing molecular template activity The action of a molecule that provides a shape or a sequence mimicking or complementary to the final product, providing template for copying the original molecule's shape or sequence. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19709 pg 2020-07-01T08:42:18Z molecular_function owl:Class GO:0140457 biolink:NamedThing protein demethylase activity Catalysis of the removal of a methyl group from a protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19325 pg 2020-04-23T07:39:14Z molecular_function owl:Class GO:0033914 biolink:NamedThing xylan 1,3-beta-xylosidase activity Catalysis of the hydrolysis of successive xylose residues from the non-reducing termini of (1->3)-beta-D-xylans. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-xylan xylohydrolase activity|1,3-beta-D-xylosidase, exo-1,3-beta-xylosidase activity|beta-1,3'-xylanase activity|exo-beta-1,3'-xylanase activity|exo-1,3-beta-xylosidase activity MetaCyc:3.2.1.72-RXN|EC:3.2.1.72 molecular_function owl:Class GO:1903700 biolink:NamedThing caecum development The process whose specific outcome is the progression of a caecum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl blindgut development|intestinum caecum development|blind intestine development|cecum development|ceca development|intestinum crassum caecum development|caeca development|intestinum crassum cecum development cls 2014-12-03T12:05:00Z biological_process owl:Class GO:0018219 biolink:NamedThing peptidyl-cysteine S-acetylation The acetylation of peptidyl-cysteine to form peptidyl-S-acetyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0056 biological_process owl:Class GO:0019103 biolink:NamedThing pyrimidine nucleotide binding Binding to a pyrimidine nucleotide, a pyrimidine nucleoside esterified with (ortho)phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902184 biolink:NamedThing negative regulation of shoot apical meristem development Any process that stops, prevents or reduces the frequency, rate or extent of shoot apical meristem development. tmpzr1t_l9r_go_relaxed.owl downregulation of promeristem development|down-regulation of SAM development|down-regulation of primary shoot meristem development|downregulation of shoot apical meristem development|inhibition of promeristem development|downregulation of SAM development|down-regulation of promeristem development|inhibition of SAM development|down regulation of shoot apical meristem development|downregulation of primary shoot meristem development|down regulation of SAM development|negative regulation of promeristem development|down regulation of primary shoot meristem development|inhibition of shoot apical meristem development|down regulation of promeristem development|negative regulation of SAM development|down-regulation of shoot apical meristem development|negative regulation of primary shoot meristem development|inhibition of primary shoot meristem development tb 2013-05-31T16:34:00Z biological_process owl:Class GO:2001293 biolink:NamedThing malonyl-CoA metabolic process The chemical reactions and pathways involving malonyl-CoA, the S-malonyl derivative of coenzyme A. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA metabolism pr 2012-02-14T02:23:11Z biological_process owl:Class GO:0033405 biolink:NamedThing UCU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UCU codon. tmpzr1t_l9r_go_relaxed.owl serine tRNA|TCT codon-amino acid adaptor activity Note that in the standard genetic code, TCT codes for serine. molecular_function owl:Class GO:0047797 biolink:NamedThing cyclohexanone dehydrogenase activity Catalysis of the reaction: A + cyclohexanone = AH(2) + cyclohex-2-enone. tmpzr1t_l9r_go_relaxed.owl cyclohexanone:(acceptor) 2-oxidoreductase activity|cyclohexanone:acceptor 2-oxidoreductase activity RHEA:21780|EC:1.3.99.14|KEGG_REACTION:R02234|MetaCyc:CYCLOHEXANONE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0030377 biolink:NamedThing urokinase plasminogen activator receptor activity Combining with the urokinase plasminogen activator to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl uPAR|U-plasminogen activator receptor activity|urokinase plasminogen activator receptor Wikipedia:Urokinase_receptor molecular_function owl:Class GO:0034987 biolink:NamedThing immunoglobulin receptor binding Binding to one or more specific sites on an immunoglobulin receptor molecule. tmpzr1t_l9r_go_relaxed.owl Fc receptor binding molecular_function owl:Class GO:0071685 biolink:NamedThing NADH dehydrogenase complex (plastoquinone) An NADH dehydrogenase complex that catalyzes the transfer of electrons to plastoquinone. The complex is involved in the non-photochemical reduction of plastoquinones and the cyclic electron transport around photosystem I, and is found in plastid thylakoids. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-19T05:20:45Z cellular_component owl:Class GO:0070553 biolink:NamedThing nicotinic acid receptor activity Combining with nicotinic acid to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl niacin receptor activity molecular_function owl:Class GO:0062240 biolink:NamedThing euchromatin-nuclear membrane anchor activity Binding to euchromatin and the nuclear inner membrane, in order to establish and maintain the euchromatin location and organization. tmpzr1t_l9r_go_relaxed.owl euchromatin-nuclear membrane tether activity|nuclear membrane-euchromatin tether activity|nuclear membrane-euchromatin anchor activity dph 2020-04-20T18:22:35Z molecular_function owl:Class GO:0090694 biolink:NamedThing Scc2-Scc4 cohesin loading complex A eukaryotically conserved heterodimeric protein complex (comprising adherin and the chromatid cohesion factor MAU2/Scc4/Ssl3) required for the loading of a cohesin, complex onto DNA. tmpzr1t_l9r_go_relaxed.owl Mis4-Ssl3 cohesin loading complex tb 2016-08-24T17:09:11Z cellular_component owl:Class GO:0019285 biolink:NamedThing glycine betaine biosynthetic process from choline The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline. tmpzr1t_l9r_go_relaxed.owl glycine betaine formation from choline|N-trimethylglycine biosynthesis from choline|glycine betaine anabolism from choline|choline oxidation|glycine betaine synthesis from choline|N-trimethylglycine biosynthetic process from choline MetaCyc:P542-PWY|MetaCyc:BETSYN-PWY|MetaCyc:CHOLINE-BETAINE-ANA-PWY biological_process owl:Class GO:0106236 biolink:NamedThing rhamnolipid biosynthesis The chemical reactions and pathways resulting in the formation/production of a glycolipid surfactant that acts as a bacterial biofilm dispersal. tmpzr1t_l9r_go_relaxed.owl rhamnolipid production hjd 2019-12-09T18:37:49Z biological_process owl:Class GO:0002626 biolink:NamedThing negative regulation of T cell antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl negative regulation of T-cell antigen processing and presentation|down regulation of T cell antigen processing and presentation|negative regulation of T lymphocyte antigen processing and presentation|down-regulation of T cell antigen processing and presentation|inhibition of T cell antigen processing and presentation|negative regulation of T-lymphocyte antigen processing and presentation|downregulation of T cell antigen processing and presentation biological_process owl:Class GO:0018637 biolink:NamedThing 1-hydroxy-2-naphthoate hydroxylase activity Catalysis of the reaction: 1-hydroxy-2-naphthoate + O2 + NADPH + 2 H+ = NADP+ + H2O + CO2 + 1,2-dihydroxynaphthalene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0491|EC:1.14.13.- molecular_function owl:Class GO:0060217 biolink:NamedThing hemangioblast cell differentiation The process in which a relatively unspecialized cell acquires the characteristics of a mature hemangioblast. Hemangioblasts are the proposed common precursor of blood and endothelial lineages. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052879 biolink:NamedThing 9,12-octadecadienoate 8-hydroperoxide 8S-isomerase activity Catalysis of the reaction: (8R,9Z,12Z)-8-hydroperoxyoctadeca-9,12-dienoate = (7S,8S,9Z,12Z)-7,8-dihydroxyoctadeca-9,12-dienoate. tmpzr1t_l9r_go_relaxed.owl (8R,9Z,12Z)-8-hydroperoxy-9,12-octadecadienoate mutase ((7S,8S,9Z,12Z)-5,8-dihydroxy-9,12-octadecadienoate-forming) activity|8-hydroperoxide isomerase activity|linoleate diol synthase activity RHEA:25399|EC:5.4.4.6|KEGG_REACTION:R07062|MetaCyc:1.13.11.44-RXN molecular_function owl:Class GO:0018171 biolink:NamedThing peptidyl-cysteine oxidation The oxidation of peptidyl-cysteine to peptidyl-L-cysteine sulfinic acid or peptidyl-L-cysteine sulfenic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0205|RESID:AA0262 biological_process owl:Class GO:2000388 biolink:NamedThing positive regulation of antral ovarian follicle growth Any process that activates or increases the frequency, rate or extent of antral ovarian follicle growth. tmpzr1t_l9r_go_relaxed.owl yaf 2011-02-16T04:54:01Z biological_process owl:Class GO:0052811 biolink:NamedThing 1-phosphatidylinositol-3-phosphate 4-kinase activity Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:1-phosphatidyl-1D-myo-inositol-3-phosphate 4-phosphotransferase activity|phosphatidylinositol 3-phosphate 4-kinase activity RHEA:63688|Reactome:R-HSA-1676145 ai 2011-10-21T03:47:58Z molecular_function owl:Class GO:0042258 biolink:NamedThing molybdenum incorporation via L-serinyl molybdopterin guanine dinucleotide The incorporation of molybdenum into a protein via L-serinyl molybdopterin guanine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0319 biological_process owl:Class GO:0015527 biolink:NamedThing glycerol-phosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycerol phosphate(out) + inorganic phosphate(in) = glycerol phosphate(in) + inorganic phosphate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062034 biolink:NamedThing L-pipecolic acid biosynthetic process The chemical reactions and pathways resulting in the formation of L-pipecolic acid, a metabolite of lysine. tmpzr1t_l9r_go_relaxed.owl L-pipecolate biosynthetic process dph 2018-04-24T12:19:36Z biological_process owl:Class GO:0000214 biolink:NamedThing tRNA-intron endonuclease complex A protein complex that catalyzes the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron. tmpzr1t_l9r_go_relaxed.owl SEN complex|tRNA splicing endonuclease complex cellular_component owl:Class GO:2001294 biolink:NamedThing malonyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of malonyl-CoA, the S-malonyl derivative of coenzyme A. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA degradation|malonyl-CoA catabolism|malonyl-CoA breakdown pr 2012-02-14T02:23:17Z biological_process owl:Class GO:0047897 biolink:NamedThing formate-dihydrofolate ligase activity Catalysis of the reaction: 7,8-dihydrofolate + ATP + formate = 10-formyldihydrofolate + ADP + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl formyl dihydrofolate synthase activity|formate:dihydrofolate ligase (ADP-forming)|dihydrofolate formyltransferase activity RHEA:24328|MetaCyc:FORMATE--DIHYDROFOLATE-LIGASE-RXN|EC:6.3.4.17|KEGG_REACTION:R02238 molecular_function owl:Class GO:0072711 biolink:NamedThing cellular response to hydroxyurea Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroxyurea stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to HU mah 2012-04-11T04:15:56Z biological_process owl:Class GO:0048241 biolink:NamedThing epinephrine transport The directed movement of epinephrine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl adrenaline transport biological_process owl:Class GO:0034175 biolink:NamedThing regulation of toll-like receptor 12 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 12 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 12 signalling pathway|regulation of TLR12 signaling pathway biological_process owl:Class GO:0030884 biolink:NamedThing exogenous lipid antigen binding Binding to an exogenous lipid antigen (examples include microbial lipids and glycolipids). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061513 biolink:NamedThing glucose 6-phosphate:inorganic phosphate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose 6-phosphate(out) + inorganic phosphate(in) = glucose 6-phosphate(in) + inorganic phosphate(out). tmpzr1t_l9r_go_relaxed.owl glucose 6-phosphate:phosphate antiporter activity Reactome:R-HSA-198513|Reactome:R-HSA-3257122|Reactome:R-HSA-3229118 dph 2013-04-17T08:47:40Z GO:0008524 molecular_function owl:Class GO:0071237 biolink:NamedThing cellular response to bacteriocin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacteriocin stimulus. A bacteriocin is a protein substance released by certain bacteria that kills but does not lyse closely related strains of bacteria. Specific bacteriocins attach to specific receptors on cell walls and induce specific metabolic block, e.g. cessation of nucleic acid or protein synthesis of oxidative phosphorylation. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:25:43Z biological_process owl:Class GO:0008855 biolink:NamedThing exodeoxyribonuclease VII activity Catalysis of the exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield 5'-phosphomononucleotides. tmpzr1t_l9r_go_relaxed.owl exonuclease VII activity|E. coli exonuclease VII|endodeoxyribonuclease VII|E. coli exonuclease VII activity|Escherichia coli exonuclease VII EC:3.1.11.6|MetaCyc:3.1.11.6-RXN molecular_function owl:Class GO:0033553 biolink:NamedThing rDNA heterochromatin A region of heterochromatin located at the rDNA repeats in a chromosome. tmpzr1t_l9r_go_relaxed.owl ribosomal DNA heterochromatin|ribosomal DNA heterochromatin of cell nucleus|nuclear rDNA heterochromatin|ribosomal DNA heterochromatin of nucleus GO:1902377 cellular_component owl:Class GO:0106094 biolink:NamedThing nuclear membrane microtubule tethering complex A nuclear membrane protein complex which connects the nuclear outer and inner membranes together, and links thereby links the nuclear lumen to cytoplasmic microtubules. tmpzr1t_l9r_go_relaxed.owl nuclear membrane microtubule tethering complex hjd 2018-02-02T18:58:35Z cellular_component owl:Class GO:0046080 biolink:NamedThing dUTP metabolic process The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl dUTP metabolism biological_process owl:Class GO:0097451 biolink:NamedThing glial limiting end-foot Terminal process of astrocyte that extends to the surface of the central nervous system. Together, glial limiting end-feet form the glial limiting membrane or glia limitans. tmpzr1t_l9r_go_relaxed.owl glial limiting endfoot NIF_Subcellular:sao181458425 pr 2012-12-17T13:36:34Z cellular_component owl:Class GO:0097450 biolink:NamedThing astrocyte end-foot Terminal process of astrocyte abutting non-neuronal surfaces in the brain. tmpzr1t_l9r_go_relaxed.owl astrocyte endfoot NIF_Subcellular:sao388182739 pr 2012-12-17T13:33:55Z cellular_component owl:Class GO:0031975 biolink:NamedThing envelope A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034562 biolink:NamedThing 2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity Catalysis of the reaction: 2,2-bis(4-hydroxyphenyl)-1-propanol + NADH + H+ + O2 = 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0864 molecular_function owl:Class GO:0075134 biolink:NamedThing induction by symbiont of host calcium or calmodulin-mediated signal transduction Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host Ca++ or calmodulin-mediated signal transduction|positive regulation by symbiont of host calcium or calmodulin-mediated signal transduction Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "positive regulation by host of symbiont calcium or calmodulin-mediated signal transduction ; GO:0075104". biological_process owl:Class GO:0051380 biolink:NamedThing norepinephrine binding Binding to norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl noradrenaline binding molecular_function owl:Class GO:1901338 biolink:NamedThing catecholamine binding Binding to catecholamine. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-03T14:08:44Z molecular_function owl:Class GO:0004019 biolink:NamedThing adenylosuccinate synthase activity Catalysis of the reaction: L-aspartate + GTP + IMP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + 3 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl adenylosuccinate synthetase activity|IMP--aspartate ligase activity|succinoadenylic kinosynthetase activity|IMP:L-aspartate ligase (GDP-forming)|succino-AMP synthetase activity Reactome:R-HSA-111524|KEGG_REACTION:R01135|EC:6.3.4.4|RHEA:15753|MetaCyc:ADENYLOSUCCINATE-SYNTHASE-RXN molecular_function owl:Class GO:2001136 biolink:NamedThing negative regulation of endocytic recycling Any process that stops, prevents or reduces the frequency, rate or extent of endocytic recycling. tmpzr1t_l9r_go_relaxed.owl negative regulation of retrograde transport of endocytic vesicles kmv 2011-10-14T03:34:43Z biological_process owl:Class GO:0070275 biolink:NamedThing aerobic ammonia oxidation to nitrite via pyruvic oxime The metabolic process in which ammonia (NH3) is oxidized to nitrite (NO2) in the presence of oxygen. Hydroxylamine is produced enzymatically, and, in the presence of pyruvate, forms pyruvic oxime in a spontaneous, non-enzymatic reaction; pyruvic oxime is then converted to nitrite. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-2242 biological_process owl:Class GO:0019329 biolink:NamedThing ammonia oxidation The chemical reactions and pathways by which ammonia or ammonium is converted to molecular nitrogen or another nitrogen compound, with accompanying loss of electrons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098804 biolink:NamedThing non-motile cilium membrane The portion of the plasma membrane surrounding a non-motile cilium. tmpzr1t_l9r_go_relaxed.owl nonmotile primary cilium membrane cellular_component owl:Class GO:0002788 biolink:NamedThing regulation of antifungal peptide production Any process that modulates the frequency, rate, or extent of antifungal peptide production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002680 biolink:NamedThing pro-T cell lineage commitment The process in which a lymphoid progenitor cell becomes committed to becoming a pro-T cell. tmpzr1t_l9r_go_relaxed.owl pro-T lymphocyte lineage commitment|pro-T cell fate commitment|pro-T lymphocyte fate commitment biological_process owl:Class GO:0008786 biolink:NamedThing allose 6-phosphate isomerase activity Catalysis of the reaction: D-allose-6-phosphate = D-allulose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-303|RHEA:28430 molecular_function owl:Class GO:0002566 biolink:NamedThing somatic diversification of immune receptors via somatic mutation The process in which immune receptor genes are diversified through somatic mutation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046419 biolink:NamedThing octopine metabolic process The chemical reactions and pathways involving octopine, (N-(1-carboxy-4-guanidinobutyl)-L-alanine), an amino acid derived opine. tmpzr1t_l9r_go_relaxed.owl octopine metabolism biological_process owl:Class GO:0002752 biolink:NamedThing cell surface pattern recognition receptor signaling pathway Any series of molecular signals generated as a consequence of a cell surface pattern recognition receptor (PRR) binding to one of its physiological ligands. PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species. tmpzr1t_l9r_go_relaxed.owl cell surface PAMP receptor signaling pathway|cell surface pattern recognition receptor signalling pathway|cell surface PRR signaling pathway|cell surface pathogen receptor signaling pathway https://github.com/geneontology/go-ontology/issues/18588 biological_process owl:Class GO:0036151 biolink:NamedThing phosphatidylcholine acyl-chain remodeling Remodeling the acyl chains of phosphatidylcholine, through sequential deacylation and re-acylation reactions, to generate phosphatidylcholine containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-14T01:54:13Z biological_process owl:Class GO:0071732 biolink:NamedThing cellular response to nitric oxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-17T04:12:52Z biological_process owl:Class GO:0044269 biolink:NamedThing glycerol ether catabolic process The chemical reactions and pathways resulting in the breakdown of glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. tmpzr1t_l9r_go_relaxed.owl glycerol ether degradation|glycerol ether catabolism|glycerol ether breakdown biological_process owl:Class GO:0001065 biolink:NamedThing mitochondrial single subunit type RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type mitochondrial RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl krc 2010-10-19T03:50:51Z molecular_function owl:Class GO:0097426 biolink:NamedThing glial filament An intermediate filament composed of glial fibrillary acidic protein (GFAP) and found in astrocytes. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1863852493 pr 2012-11-07T14:59:55Z cellular_component owl:Class GO:0019114 biolink:NamedThing catechol dioxygenase activity Catalysis of the reaction: catechol + O2 = a muconate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.- molecular_function owl:Class GO:0097504 biolink:NamedThing Gemini of coiled bodies Nuclear bodies frequently found near or associated with Cajal bodies (also called coiled bodies or CBs). Gemini of coiled bodies, or 'gems', are similar in size and shape to CBs, and often indistinguishable under the microscope. Unlike CBs, gems do not contain small nuclear ribonucleoproteins (snRNPs); they contain a protein called survivor of motor neurons (SMN) whose function relates to snRNP biogenesis. Gems are believed to assist CBs in snRNP biogenesis, and to play a role in the etiology of spinal muscular atrophy (SMA). tmpzr1t_l9r_go_relaxed.owl Gems pr 2013-09-24T15:20:12Z cellular_component owl:Class GO:0002045 biolink:NamedThing regulation of cell adhesion involved in intussusceptive angiogenesis The process that modulates the frequency, rate or extent of attachment of a blood vessel endothelial cell to another cell or to the extracellular matrix involved in intussusceptive angiogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046529 biolink:NamedThing imaginal disc fusion, thorax closure The joining of the parts of the wing imaginal discs, giving rise to the adult thorax. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008056 biolink:NamedThing ocellus development The process whose specific outcome is the progression of the ocellus over time, from its formation to the mature structure. The ocellus is a simple visual organ of insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990816 biolink:NamedThing vacuole-mitochondrion membrane contact site A zone of apposition between the vacuolar membrane and the mitochondrial outer membrane, important for transfer of lipids between the two organelles. tmpzr1t_l9r_go_relaxed.owl vacuole and mitochondria patch|vCLAMP mcc 2015-07-29T21:06:41Z cellular_component owl:Class GO:0016059 biolink:NamedThing deactivation of rhodopsin mediated signaling The process of restoring the photoreceptor cell to its unexcited state after termination of the stimulus (photon). tmpzr1t_l9r_go_relaxed.owl deactivation of rhodopsin mediated signalling|rod response recovery biological_process owl:Class GO:0004068 biolink:NamedThing aspartate 1-decarboxylase activity Catalysis of the reaction: L-aspartate = beta-alanine + CO2. tmpzr1t_l9r_go_relaxed.owl L-aspartate 1-carboxy-lyase (beta-alanine-forming)|L-aspartate alpha-decarboxylase activity|aspartic alpha-decarboxylase|aspartate alpha-decarboxylase activity|L-aspartate 1-carboxy-lyase activity MetaCyc:ASPDECARBOX-RXN|EC:4.1.1.11|RHEA:19497|MetaCyc:PWY-5155 molecular_function owl:Class GO:0102171 biolink:NamedThing DMNT synthase activity Catalysis of the reaction: H+ + (3S,6E)-nerolidol + NADPH + O2 <=> (E)-4,8-dimethyl-1,3,7-nonatriene + buten-2-one + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:55424|MetaCyc:RXN-11911 molecular_function owl:Class GO:0080005 biolink:NamedThing photosystem stoichiometry adjustment Adjustment of Photosystem I/Photosystem II ratio in response to light conditions. The function of photosystem stoichiometry adjustment is to compensate for any deficiency in energy conversion at either photosystem I or photosystem II by increasing the quantity the photosystem that will otherwise become the rate-limiting to overall photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990416 biolink:NamedThing cellular response to brain-derived neurotrophic factor stimulus A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brain-derived neurotrophic factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to BDNF stimulus sl 2014-07-11T17:55:59Z biological_process owl:Class GO:0070708 biolink:NamedThing RNA cytidine insertion The modification of an RNA molecule by insertion of a cytidine nucleotide. tmpzr1t_l9r_go_relaxed.owl RNA C insertion mah 2009-06-08T04:52:49Z biological_process owl:Class GO:0031709 biolink:NamedThing gastrin-releasing peptide receptor binding Binding to a gastrin-releasing peptide receptor. tmpzr1t_l9r_go_relaxed.owl GRP receptor binding|gastrin-releasing peptide receptor ligand molecular_function owl:Class GO:0048810 biolink:NamedThing female analia morphogenesis The process in which the anatomical structures of the analia of the female are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046701 biolink:NamedThing insecticide catabolic process The chemical reactions and pathways resulting in the breakdown of insecticides, chemicals used to kill insects. tmpzr1t_l9r_go_relaxed.owl insecticide degradation|insecticide breakdown|insecticide catabolism biological_process owl:Class GO:0052916 biolink:NamedThing 23S rRNA (guanine(1835)-N(2))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(1835) in 23S rRNA = N(2)-methylguanosine(1835) in 23S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:42744|MetaCyc:RXN-11635|KEGG_REACTION:R07234|EC:2.1.1.174 molecular_function owl:Class GO:1990477 biolink:NamedThing MTREC complex Protein complex formed by an RNA binding protein Red1, an RNA helicase Mtl1, Red5, Rmn1, Iss10/Pir1, and Ars2/Pir2. This complex is required for the recruitment of the nuclear exosome to Mmi1 nuclear focus. It is likely related to the human CBCN complex. This complex is also known as RNA silencing (NURS) complex. tmpzr1t_l9r_go_relaxed.owl Mtl1-Red1 core complex|PAXT complex|NURS complex https://github.com/geneontology/go-ontology/issues/19059|https://github.com/geneontology/go-ontology/issues/21207 An example of this is the complex formed by Red1 and Mtl1 in S. pombe (UniProt symbols Q9UTR8 and O13799 respectively) in PMID:24210919 (inferred from direct assay). mah 2014-03-24T13:30:52Z GO:1990345 cellular_component owl:Class GO:0034510 biolink:NamedThing centromere separation The cell cycle process in which centromeres are physically detached from each other during chromosome separation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008107 biolink:NamedThing galactoside 2-alpha-L-fucosyltransferase activity Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphofucose-galactoside 2-L-fucosyltransferase activity|secretor-type beta-galactoside alpha1->2 fucosyltransferase activity|GDP fucose-lactose fucosyltransferase activity|beta-galactoside alpha-1->2 fucosyltransferase activity|H-gene-encoded beta-galactoside alpha1->2 fucosyltransferase activity|secretor-type beta-galactoside alpha-1->2 fucosyltransferase activity|guanosine diphosphofucose-galactosylacetylglucosaminylgalactosyl-glucosylceramide alpha-L-fucosyltransferase activity|alpha(1,2)-L-fucosyltransferase activity|GDP-L-fucose:lactose fucosyltransferase activity|alpha-2-fucosyltransferase activity|guanosine diphosphofucose-lactose fucosyltransferase activity|galactoside 2-L-fucosyltransferase activity|GDP-beta-L-fucose:beta-D-galactosyl-R 2-alpha-L-fucosyltransferase activity|blood group H alpha-2-fucosyltransferase activity|beta-galactoside alpha1->2 fucosyltransferase activity|guanosine diphosphofucose-galactosylacetylglucosaminylgalactosylglucosylceramide alpha-L-fucosyltransferase activity|guanosine diphosphofucose-beta-D-galactosyl-alpha-2-L-fucosyltransferase activity|guanosine diphosphofucose-glycoprotein 2-alpha-L-fucosyltransferase activity|blood-group substance H-dependent fucosyltransferase activity|guanosine diphospho-L-fucose-lactose fucosyltransferase activity|alpha-2-L-fucosyltransferase activity|guanosine diphosphofucose-glycoprotein 2-alpha-fucosyltransferase activity|alpha-(1->2)-L-fucosyltransferase activity|H-gene-encoded beta-galactoside alpha-1->2 fucosyltransferase activity Reactome:R-HSA-9603982|Reactome:R-HSA-9603983|MetaCyc:GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN|RHEA:50664|EC:2.4.1.69|Reactome:R-HSA-9036987 molecular_function owl:Class GO:0031127 biolink:NamedThing alpha-(1,2)-fucosyltransferase activity Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha-(1->2) linkage. tmpzr1t_l9r_go_relaxed.owl alpha-1,2-fucosyltransferase activity|alpha-(1->2)-fucosyltransferase activity molecular_function owl:Class GO:0042185 biolink:NamedThing m-xylene catabolic process The chemical reactions and pathways resulting in the breakdown of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl meta-xylene catabolic process|meta-xylene catabolism|m-xylene catabolism|m-xylene degradation|m-xylene breakdown MetaCyc:PWY-142 biological_process owl:Class GO:0018949 biolink:NamedThing m-xylene metabolic process The chemical reactions and pathways involving m-xylene, (1,3-dimethylbenzene) a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl meta-xylene metabolism|m-xylene metabolism|meta-xylene metabolic process UM-BBD_pathwayID:mxy biological_process owl:Class GO:0070290 biolink:NamedThing N-acylphosphatidylethanolamine-specific phospholipase D activity Catalysis of the release of N-acylethanolamine from N-acyl-phosphatidylethanolamine (NAPE) to generate N-acylethanolamine (NAE). tmpzr1t_l9r_go_relaxed.owl N-acyl-phosphatidylethanolamine-specific phospholipase D activity|NAPE-specific phospholipase D activity EC:3.1.4.4|Reactome:R-HSA-2466831 molecular_function owl:Class GO:0047777 biolink:NamedThing (S)-citramalyl-CoA lyase activity Catalysis of the reaction: (3S)-citramalyl-CoA = acetyl-CoA + pyruvate. tmpzr1t_l9r_go_relaxed.owl (3S)-citramalyl-CoA lyase activity|citramalyl-CoA lyase activity|(3S)-citramalyl-CoA pyruvate-lyase activity|(+)-CMA-CoA lyase activity|citramalyl coenzyme A lyase activity|(3S)-citramalyl-CoA pyruvate-lyase (acetyl-CoA-forming) RHEA:22612|KEGG_REACTION:R00237|MetaCyc:CITRAMALYL-COA-LYASE-RXN|EC:4.1.3.25 molecular_function owl:Class GO:0040019 biolink:NamedThing positive regulation of embryonic development Any process that activates or increases the frequency, rate or extent of embryonic development. tmpzr1t_l9r_go_relaxed.owl upregulation of embryonic development|up-regulation of embryonic development|up regulation of embryonic development|activation of embryonic development|stimulation of embryonic development biological_process owl:Class GO:0016435 biolink:NamedThing rRNA (guanine) methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylguanine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008403 biolink:NamedThing 25-hydroxycholecalciferol-24-hydroxylase activity Catalysis of the hydroxylation of C-24 of 25-hydroxycholecalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycholecalciferol. tmpzr1t_l9r_go_relaxed.owl 25-hydroxyvitamin D3 24-hydroxylase activity|cytochrome P450 CYP24 GO:0030344 molecular_function owl:Class GO:0070611 biolink:NamedThing histone methyltransferase activity (H3-R2 specific) Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 2) = S-adenosyl-L-homocysteine + (histone H3)-N-methyl-arginine (position 2). This reaction is the addition of a methyl group to arginine at position 2 of histone H3. tmpzr1t_l9r_go_relaxed.owl histone methylase activity (H3-R2 specific)|histone-arginine N-methyltransferase activity (H3-R2 specific) mah 2009-04-29T02:04:44Z molecular_function owl:Class GO:0036195 biolink:NamedThing muscle cell projection membrane The portion of the plasma membrane surrounding a muscle cell projection. tmpzr1t_l9r_go_relaxed.owl bf 2012-04-20T10:21:51Z cellular_component owl:Class GO:0050265 biolink:NamedThing RNA uridylyltransferase activity Catalysis of the reaction: UTP + RNA(n) = diphosphate + RNA(n+1). tmpzr1t_l9r_go_relaxed.owl UTP:RNA uridylyltransferase activity|polynucleotide uridylyltransferase activity|terminal uridylyltransferase activity|poly(U) polymerase activity|TUT activity Reactome:R-HSA-8941312|MetaCyc:RNA-URIDYLYLTRANSFERASE-RXN|RHEA:14785|EC:2.7.7.52 molecular_function owl:Class GO:0061661 biolink:NamedThing FAT10 ligase activity Catalysis of the transfer of FAT10 to a substrate protein via the reaction X-FAT10 + S --> X + S-FAT10, where X is either an E2 or E3 enzyme, the X-FAT10 linkage is a thioester bond, and the S-FAT10 linkage is an isopeptide bond between the C-terminal glycine of FAT10 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T13:53:10Z molecular_function owl:Class GO:1903801 biolink:NamedThing L-leucine import across plasma membrane The directed movement of L-leucine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl leucine import|L-leucine uptake|L-leucine import into cell|leucine uptake|L-leucine import mah 2015-01-16T14:34:46Z GO:0060356 biological_process owl:Class GO:0021688 biolink:NamedThing cerebellar molecular layer formation The process that gives rise to the cerebellar molecular layer. This process pertains to the initial formation of a structure from unspecified parts. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046569 biolink:NamedThing glyoxal oxidase activity Catalysis of the reaction: glyoxal + O2 + H2O = glyoxalate + H2O2. tmpzr1t_l9r_go_relaxed.owl GLOX molecular_function owl:Class GO:0008715 biolink:NamedThing CDP-diacylglycerol diphosphatase activity Catalysis of the reaction: CDP-diacylglycerol + H(2)O = a phosphatidate + CMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl CDP-diacylglycerol phosphatidylhydrolase activity|CDP-diacylglycerol pyrophosphatase activity|cytidine diphosphodiacylglycerol pyrophosphatase activity|CDP diacylglycerol hydrolase activity MetaCyc:CDPDIGLYPYPHOSPHA-RXN|KEGG_REACTION:R01797|RHEA:15221|EC:3.6.1.26 molecular_function owl:Class GO:0097416 biolink:NamedThing Lewy body-like hyaline inclusion Cytoplasmic inclusion found in neurons. It consists of filaments and granular materials, exhibits a dense core with a rough peripheral halo and lacks a limiting membrane. The filaments of these inclusions are composed of approximately 15-25 nm granule-coated fibrils in association with normal 10-nm neurofilaments. tmpzr1t_l9r_go_relaxed.owl LBHI NIF_Subcellular:nlx_subcell_20090105 pr 2012-11-06T16:46:15Z cellular_component owl:Class GO:0051659 biolink:NamedThing maintenance of mitochondrion location Any process in which a mitochondrion is maintained in a specific location within a cell and prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of mitochondrion localization|maintenance of mitochondria localization biological_process owl:Class GO:0001591 biolink:NamedThing dopamine neurotransmitter receptor activity, coupled via Gi/Go Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gi/Go to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl dopamine D4 receptor activity|dopamine D3 receptor activity|dopamine D2 receptor activity GO:0001592|GO:0001593|GO:0001670 molecular_function owl:Class GO:0046811 biolink:NamedThing histone deacetylase inhibitor activity Binds to and stops, prevents or reduces the activity of histone deacetylase, which catalyzes of the removal of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071965 biolink:NamedThing multicellular organismal locomotion Locomotion in a multicellular organism, i.e. self-propelled movement of a multicellular organism from one location to another. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-14T10:34:35Z biological_process owl:Class GO:0018606 biolink:NamedThing benzenesulfonate dioxygenase activity Catalysis of the reaction: toluene-4-sulfonate + NADH + O2 + H+ = NAD+ + HSO3(-) + 4-methylcatechol. tmpzr1t_l9r_go_relaxed.owl benzenesulphonate dioxygenase activity EC:1.14.12.-|UM-BBD_reactionID:r0295 molecular_function owl:Class GO:0008213 biolink:NamedThing protein alkylation The addition of an alkyl group to a protein amino acid. Alkyl groups are derived from alkanes by removal of one hydrogen atom. tmpzr1t_l9r_go_relaxed.owl protein amino acid alkylation biological_process owl:Class GO:0047639 biolink:NamedThing alcohol oxidase activity Catalysis of the reaction: a primary alcohol + O2 = an aldehyde + H2O2. tmpzr1t_l9r_go_relaxed.owl ethanol oxidase activity|alcohol:oxygen oxidoreductase activity|AOX activity MetaCyc:ALCOHOL-OXIDASE-RXN|EC:1.1.3.13|RHEA:19829 Note that the enzyme alcohol oxidase also has methanol oxidase activity (GO:0046563). molecular_function owl:Class GO:0009317 biolink:NamedThing acetyl-CoA carboxylase complex A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex. tmpzr1t_l9r_go_relaxed.owl ACCase complex cellular_component owl:Class GO:0035228 biolink:NamedThing negative regulation of glutamate-cysteine ligase activity Any process that stops or reduces the activity of the enzyme glutamate-cysteine ligase. tmpzr1t_l9r_go_relaxed.owl down-regulation of glutamate-cysteine ligase activity|downregulation of glutamate-cysteine ligase activity|inhibition of glutamate-cysteine ligase activity|down regulation of glutamate-cysteine ligase activity biological_process owl:Class GO:0047114 biolink:NamedThing kynurenate-7,8-dihydrodiol dehydrogenase activity Catalysis of the reaction: 7,8-dihydro-7,8-dihydroxykynurenate + NAD(+) = 7,8-dihydroxykynurenate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydro-7,8-dihydroxykynurenate:NAD+ oxidoreductase activity|7,8-dihydro-7,8-dihydroxykynurenate dehydrogenase activity|7,8-dihydroxykynurenic acid 7,8-diol dehydrogenase activity KEGG_REACTION:R03251|EC:1.3.1.18|RHEA:22248|MetaCyc:1.3.1.18-RXN molecular_function owl:Class GO:0031586 biolink:NamedThing negative regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the inositol 1,4,5-trisphosphate-sensitive calcium-release channel. tmpzr1t_l9r_go_relaxed.owl down-regulation of IP3 receptor activity|down regulation of IP3 receptor activity|inhibition of IP3 receptor activity|negative regulation of IP3 receptor activity|negative regulation of inositol 1,4,5-trisphosphate receptor activity|downregulation of IP3 receptor activity biological_process owl:Class GO:0033375 biolink:NamedThing protease localization to T cell secretory granule Any process in which a protease is transported to, or maintained in, a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl protease localization in T cell secretory granule|protease localization in T-cell secretory granule|protease localization in T-lymphocyte secretory granule|protease localization in T lymphocyte secretory granule|protease localisation in T cell secretory granule biological_process owl:Class GO:1902362 biolink:NamedThing melanocyte apoptotic process Any apoptotic process in a melanocyte, the main structural component of the epidermis. tmpzr1t_l9r_go_relaxed.owl melanophore apoptosis|melanophore apoptotic process|melanocyte apoptosis pr 2013-08-15T16:35:45Z biological_process owl:Class GO:0102235 biolink:NamedThing 1-penten-3-one reductase activity Catalysis of the reaction: 1-penten-3-one + NADPH + H+ <=> 1-pentan-3-one + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12295 molecular_function owl:Class GO:0019862 biolink:NamedThing IgA binding Binding to an immunoglobulin of an IgA isotype. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0039588 biolink:NamedThing suppression by virus of host antigen processing and presentation Any viral process that inhibits a host antigen-presenting cell expressing a peptide antigen on its cell surface in association with an MHC protein complex. tmpzr1t_l9r_go_relaxed.owl inhibition of host proteasome antigen processing by virus VZ:815 bf 2012-05-04T04:34:52Z biological_process owl:Class GO:0061565 biolink:NamedThing dAMP phosphorylation The process of introducing a phosphate group into dAMP, deoxyadenosine monophosphate, to produce dADP. Addition of two phosphate groups produces dATP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T12:50:38Z biological_process owl:Class GO:1901789 biolink:NamedThing benzoyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of benzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA biosynthesis|benzoyl-CoA anabolism|benzoyl-CoA synthesis|benzoyl-CoA formation yaf 2013-01-16T11:14:03Z biological_process owl:Class GO:1903840 biolink:NamedThing response to arsenite(3-) Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenite(3-) stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-22T19:49:25Z biological_process owl:Class GO:0035211 biolink:NamedThing spermathecum morphogenesis The process in which the anatomical structures of a spermathecum, a sperm storage organ, are generated and organized. Paired spermathecae lie at the anterior end of the insect uterus on the dorsal side. Each spermatheca consists of an oval shaped capsule, connected to the uterus by a spermathecal stalk. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'spermathecum ; FBbt:00004921'. biological_process owl:Class GO:1905712 biolink:NamedThing cellular response to phosphatidylethanolamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phosphatidylethanolamine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to phosphatidylethanolamines|cellular response to phosphatidyl(amino)ethanols|cellular response to PtdEtn|cellular response to PE sl 2016-11-21T19:55:40Z biological_process owl:Class GO:0018478 biolink:NamedThing malonate-semialdehyde dehydrogenase (acetylating) activity Catalysis of the reaction: 3-oxopropanoate + CoA + NADP+ = acetyl-CoA + CO2 + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 3-oxopropanoate:NAD(P)+ oxidoreductase (decarboxylating, CoA-acetylating)|malonic semialdehyde oxidative decarboxylase activity EC:1.2.1.18|RHEA:22988|MetaCyc:1.2.1.18-RXN molecular_function owl:Class GO:0010626 biolink:NamedThing negative regulation of Schwann cell proliferation Any process that decreases the frequency or extent of the multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904489 biolink:NamedThing regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter A negative regulation of transcription from RNA polymerase II promoter that results in regulation of reactive oxygen species metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of reactive oxygen species metabolism by down regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by down regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by negative regulation of transcription from Pol II promoter|regulation of reactive oxygen species metabolism by negative regulation of global transcription from Pol II promoter|regulation of reactive oxygen species metabolic process by negative regulation of gene-specific transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by down-regulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by downregulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by inhibition of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by negative regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by down regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by down-regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by negative regulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by negative regulation of transcription from Pol II promoter|regulation of reactive oxygen species metabolism by downregulation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by negative regulation of transcription from RNA polymerase II promoter, global|regulation of reactive oxygen species metabolic process by inhibition of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by down-regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by downregulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by down regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by negative regulation of transcription from RNA polymerase II promoter, global|regulation of ROS metabolic process by down-regulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by inhibition of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by downregulation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by down-regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by negative regulation of global transcription from Pol II promoter|regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter, global|regulation of ROS metabolic process by inhibition of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by negative regulation of transcription from Pol II promoter|regulation of ROS metabolic process by negative regulation of gene-specific transcription from RNA polymerase II promoter|regulation of ROS metabolic process by inhibition of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by down regulation of global transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by down-regulation of global transcription from RNA polymerase II promoter|regulation of ROS metabolic process by down regulation of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by downregulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by downregulation of transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolism by negative regulation of gene-specific transcription from RNA polymerase II promoter|regulation of reactive oxygen species metabolic process by inhibition of transcription from RNA polymerase II promoter|regulation of ROS metabolic process by negative regulation of global transcription from Pol II promoter kmv 2015-07-17T18:12:06Z biological_process owl:Class GO:0033849 biolink:NamedThing chrysanthemyl diphosphate synthase activity Catalysis of the reaction: 2 dimethylallyl diphosphate = (R,R)-chrysanthemyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl CPPase activity|dimethylallyl-diphosphate:dimethylallyl-diphosphate dimethylallyltransferase (chrysanthemyl-diphosphate-forming) activity EC:2.5.1.67|MetaCyc:2.5.1.67-RXN|RHEA:14009|KEGG_REACTION:R08948 molecular_function owl:Class GO:1905268 biolink:NamedThing negative regulation of chromatin organization Any process that stops, prevents or reduces the frequency, rate or extent of chromatin organization. tmpzr1t_l9r_go_relaxed.owl down regulation of chromatin organisation|inhibition of chromatin organisation|inhibition of chromatin organization|down-regulation of chromatin organisation|negative regulation of chromatin modification|downregulation of chromatin organization|inhibition of establishment or maintenance of chromatin architecture|down regulation of chromatin organization|down regulation of establishment or maintenance of chromatin architecture|negative regulation of establishment or maintenance of chromatin architecture|negative regulation of chromatin organisation|down-regulation of chromatin organization|downregulation of chromatin organisation|down-regulation of establishment or maintenance of chromatin architecture|downregulation of establishment or maintenance of chromatin architecture pr 2016-06-15T20:14:47Z GO:1903309 biological_process owl:Class GO:0120217 biolink:NamedThing DNA gyrase complex A bacterial type IIA topoisomerase that is unique in its function of introducing negative supercoils into DNA at the expense of ATP hydrolysis and is also capable of relaxing positive supercoils, an activity shared with topoisomerase IV. Typically, it is composed of two copies each of an A subunit (GyrA) and a B subunit (GyrB). tmpzr1t_l9r_go_relaxed.owl topoisomerase II complex krc 2019-08-20T18:36:35Z cellular_component owl:Class GO:1902767 biolink:NamedThing isoprenoid biosynthetic process via mevalonate The chemical reactions and pathways resulting in the formation of isoprenoid via mevalonate. tmpzr1t_l9r_go_relaxed.owl isoprenoid synthesis via mevalonate|isoprenoid formation via mevalonate|isoprenoid anabolism via mevalonate|isoprenoid biosynthesis via mevalonate tt 2014-03-10T23:45:10Z biological_process owl:Class GO:1902597 biolink:NamedThing positive regulation of DNA replication origin binding Any process that activates or increases the frequency, rate or extent of DNA replication origin binding. tmpzr1t_l9r_go_relaxed.owl positive regulation of ARS binding|upregulation of DNA replication origin binding|up regulation of DNA replication origin binding|up-regulation of ARS binding|upregulation of ARS binding|activation of ARS binding|up regulation of ARS binding|up-regulation of DNA replication origin binding|activation of DNA replication origin binding mah 2013-12-19T16:19:57Z biological_process owl:Class GO:0050558 biolink:NamedThing maltose epimerase activity Catalysis of the reaction: alpha-maltose = beta-maltose. tmpzr1t_l9r_go_relaxed.owl maltose 1-epimerase activity MetaCyc:5.1.3.21-RXN|KEGG_REACTION:R07319|RHEA:21228|EC:5.1.3.21 molecular_function owl:Class GO:0018963 biolink:NamedThing phthalate metabolic process The chemical reactions and pathways involving phthalate, the anion of phthalic acid. Phthalic acid diesters are used industrially in the production of a variety of household and consumer goods including plastic polymers, lubricating oils, and carriers for perfumes in cosmetics, while phthalic acid itself is used industrially as a plasticizer. Terephthalate is used in the synthesis of polyethylene terephthalate (polyethene terephthlate, abbreviated PET or PETE), a plastic polymer with many commercial uses. tmpzr1t_l9r_go_relaxed.owl phthalate metabolism|phthalic acid metabolism|phthalic acid metabolic process UM-BBD_pathwayID:pth biological_process owl:Class GO:0035240 biolink:NamedThing dopamine binding Binding to dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050205 biolink:NamedThing oxamate carbamoyltransferase activity Catalysis of the reaction: carbamoyl phosphate + oxamate = oxalurate + phosphate. tmpzr1t_l9r_go_relaxed.owl carbamoyl-phosphate:oxamate carbamoyltransferase activity|oxamic transcarbamylase activity RHEA:22984|EC:2.1.3.5|KEGG_REACTION:R02937|MetaCyc:OXAMATE-CARBAMOYLTRANSFERASE-RXN molecular_function owl:Class GO:0051722 biolink:NamedThing protein C-terminal methylesterase activity Catalysis of the reaction: C-terminal protein amino acid methyl ester + H2O = protein amino acid + methanol. tmpzr1t_l9r_go_relaxed.owl protein phosphatase methylesterase activity Reactome:R-HSA-8856951 molecular_function owl:Class GO:0080046 biolink:NamedThing quercetin 4'-O-glucosyltransferase activity Catalysis of the transfer of a glucosyl group from UDP-glucose to the 4'-hydroxy group of a quercetin molecule. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10788 molecular_function owl:Class GO:0050178 biolink:NamedThing phenylpyruvate tautomerase activity Catalysis of the reaction: keto-phenylpyruvate = enol-phenylpyruvate. tmpzr1t_l9r_go_relaxed.owl phenylpyruvic keto--enol isomerase activity|phenylpyruvate keto-enol-isomerase activity|phenylpyruvate keto--enol tautomerase activity MetaCyc:PHENYLPYRUVATE-TAUTOMERASE-RXN|RHEA:17097|EC:5.3.2.1 molecular_function owl:Class GO:0039671 biolink:NamedThing evasion by virus of host natural killer cell activity Any process by which a virus avoids the effects mediated by the host organism's natural killer (NK) cells. tmpzr1t_l9r_go_relaxed.owl evasion by virus of host NK cell killing|viral immunoevasion of host NK cell|protection by virus against host NK cell cytotoxicity|modulation of host NK-cell activity by virus|evasion by virus of host natural killer cell response|suppression by virus of host natural killer cell function bf 2013-09-25T11:04:53Z biological_process owl:Class GO:0034780 biolink:NamedThing glyphosate dehydrogenase activity Catalysis of the reaction: glyphosate + OH- = glyoxylate + aminomethylphosphonic acid + H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0073 molecular_function owl:Class GO:0140289 biolink:NamedThing protein mono-ADP-ribosylation The transfer, from NAD, of a single (mono) ADP-ribose molecule to protein amino acids. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T13:52:54Z biological_process owl:Class GO:0061105 biolink:NamedThing regulation of stomach neuroendocrine cell differentiation Any process that modulates the rate, frequency or extent of the differentiation of a neuroendocrine cell in the stomach. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-29T12:19:37Z biological_process owl:Class GO:0005915 biolink:NamedThing zonula adherens A cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells. tmpzr1t_l9r_go_relaxed.owl belt desmosome|adhesion belt|intermediate junction|zonula adhaerens NIF_Subcellular:sao1400623473 cellular_component owl:Class GO:1902104 biolink:NamedThing positive regulation of metaphase/anaphase transition of meiotic cell cycle Any process that activates or increases the frequency, rate or extent of metaphase/anaphase transition of meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl up-regulation of meiotic metaphase/anaphase transition|upregulation of metaphase/anaphase transition of meiotic cell cycle|upregulation of meiotic metaphase/anaphase transition|activation of meiotic metaphase/anaphase transition|up-regulation of metaphase/anaphase transition of meiotic cell cycle|positive regulation of meiotic metaphase/anaphase transition|up regulation of metaphase/anaphase transition of meiotic cell cycle|up regulation of meiotic metaphase/anaphase transition|activation of metaphase/anaphase transition of meiotic cell cycle jl 2013-05-02T12:45:48Z biological_process owl:Class GO:0003098 biolink:NamedThing tubuloglomerular feedback The process in which blood volume is regulated due to a change in the rate of glomerular filtration. This is accomplished by a feedback mechanism that senses changes in the juxtaglomerular apparatus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Tubuloglomerular_feedback biological_process owl:Class GO:0050322 biolink:NamedThing taurine-2-oxoglutarate transaminase activity Catalysis of the reaction: taurine + 2-oxoglutarate = sulfoacetaldehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl taurine:2-oxoglutarate aminotransferase activity|taurine--glutamate transaminase activity|taurine--alpha-ketoglutarate aminotransferase activity|taurine aminotransferase activity|taurine transaminase activity RHEA:16353|MetaCyc:RXN-2301|EC:2.6.1.55 molecular_function owl:Class GO:0039691 biolink:NamedThing double stranded viral RNA replication A viral genome replication process where the template genome is double stranded RNA (dsRNA). Genomic dsRNA is first transcribed into single-stranded (ss) mRNA, which is then replicated to ds-genomic RNA. tmpzr1t_l9r_go_relaxed.owl VZ:1936 bf 2013-10-17T15:52:19Z biological_process owl:Class GO:0047954 biolink:NamedThing glycerol-2-phosphatase activity Catalysis of the reaction: glycerol 2-phosphate + H(2)O = glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-glycerophosphatase activity|glycerol-2-phosphate phosphohydrolase activity|beta-glycerophosphate phosphatase activity|beta-glycerophosphatase activity EC:3.1.3.19|RHEA:13105|KEGG_REACTION:R01043|MetaCyc:GLYCEROL-2-PHOSPHATASE-RXN molecular_function owl:Class GO:0015757 biolink:NamedThing galactose transmembrane transport The process in which galactose is transported across a lipid bilayer, from one side of a membrane to the other. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. tmpzr1t_l9r_go_relaxed.owl galactose transport biological_process owl:Class GO:1900705 biolink:NamedThing negative regulation of siderophore biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of siderophore biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of siderochrome biosynthesis|down-regulation of siderochrome biosynthetic process|inhibition of siderochrome biosynthesis|down regulation of siderophore biosynthesis|down regulation of siderophore formation|down regulation of siderophore synthesis|down-regulation of siderophore anabolism|downregulation of siderochrome biosynthetic process|down-regulation of siderophore formation|inhibition of siderophore biosynthetic process|negative regulation of siderophore formation|negative regulation of siderophore biosynthetic process, peptide formation|downregulation of siderophore biosynthetic process, peptide formation|down regulation of siderochrome biosynthetic process|down regulation of siderophore biosynthetic process|downregulation of siderophore biosynthesis|downregulation of siderophore biosynthetic process|downregulation of siderochrome biosynthesis|down-regulation of siderophore biosynthesis|downregulation of siderophore formation|down-regulation of siderophore biosynthetic process, peptide formation|negative regulation of siderophore anabolism|inhibition of siderophore biosynthesis|negative regulation of siderophore biosynthetic process, peptide modification|downregulation of siderophore anabolism|inhibition of siderophore anabolism|inhibition of siderophore biosynthetic process, peptide modification|down regulation of siderophore anabolism|down-regulation of siderophore biosynthetic process|negative regulation of siderophore synthesis|negative regulation of siderochrome biosynthesis|inhibition of siderochrome biosynthetic process|down regulation of siderophore biosynthetic process, peptide formation|down regulation of siderochrome biosynthesis|downregulation of siderophore synthesis|negative regulation of siderochrome biosynthetic process|down-regulation of siderophore biosynthetic process, peptide modification|inhibition of siderophore formation|inhibition of siderophore synthesis|downregulation of siderophore biosynthetic process, peptide modification|inhibition of siderophore biosynthetic process, peptide formation|down regulation of siderophore biosynthetic process, peptide modification|down-regulation of siderophore synthesis|negative regulation of siderophore biosynthesis di 2012-05-22T04:59:49Z biological_process owl:Class GO:0047663 biolink:NamedThing aminoglycoside 6'-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + kanamycin B = N(6')-acetylkanamycin B + CoA + H(+). This is acetylation of the 6'-amino group of the 6-deoxy-6-aminoglucose ring. tmpzr1t_l9r_go_relaxed.owl AAC(6') activity|aminoglycoside-6-N-acetyltransferase activity|acetyl-CoA:kanamycin-B N6'-acetyltransferase activity|kanamycin 6'-N-acetyltransferase activity|6'-aminoglycoside-N-acetyltransferase activity|aminoglycoside-6'-acetyltransferase activity|aminoglycoside N6'-acetyltransferase activity MetaCyc:AMINOGLYCOSIDE-N6-ACETYLTRANSFERASE-RXN|KEGG_REACTION:R01889|EC:2.3.1.82|RHEA:16449 molecular_function owl:Class GO:0070071 biolink:NamedThing proton-transporting two-sector ATPase complex assembly The aggregation, arrangement and bonding together of a proton-transporting two-sector ATPase complex, a large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008841 biolink:NamedThing dihydrofolate synthase activity Catalysis of the reaction: ATP + dihydropterate + L-glutamate = ADP + phosphate + dihydrofolate. tmpzr1t_l9r_go_relaxed.owl folylpoly-(gamma-glutamate) synthetase-dihydrofolate synthase activity|DHFS activity|7,8-dihydrofolate synthetase activity|H2-folate synthetase activity|dihydropteroate:L-glutamate ligase (ADP-forming) activity|H(2)-folate synthetase activity|FHFS/FPGS activity|7,8-dihydropteroate:L-glutamate ligase (ADP) activity|7,8-dihydropteroate:L-glutamate ligase (ADP-forming)|FHFS activity|dihydrofolate synthetase activity|dihydrofolate synthetase-folylpolyglutamate synthetase activity RHEA:23584|MetaCyc:DIHYDROFOLATESYNTH-RXN|EC:6.3.2.12 molecular_function owl:Class GO:1990173 biolink:NamedThing protein localization to nucleoplasm A process in which a protein is transported to, or maintained in, a location within the nucleoplasm. tmpzr1t_l9r_go_relaxed.owl nucleolus to nucleoplasm transport|protein localisation to nucleoplasm https://github.com/geneontology/go-ontology/issues/14690 mah 2013-08-23T15:01:16Z GO:0032066 biological_process owl:Class GO:0018522 biolink:NamedThing benzoyl-CoA reductase activity Catalysis of the reaction: 2 ADP + cyclohexa-1,5-diene-1-carbonyl-CoA + oxidized ferredoxin + 2 phosphate = 2 ATP + 2 H(2)O + benzoyl-CoA + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA reductase (dearomatizing) activity|cyclohexa-1,5-diene-1-carbonyl-CoA:ferredoxin oxidoreductase (aromatizing, ATP-forming) activity RHEA:30199|EC:1.3.7.8|UM-BBD_reactionID:r0190|KEGG_REACTION:R02451|MetaCyc:1.3.99.15-RXN molecular_function owl:Class GO:0044648 biolink:NamedThing histone H3-K4 dimethylation The modification of histone H3 by addition of two methyl groups to lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-11T01:27:33Z biological_process owl:Class GO:0102066 biolink:NamedThing alpha-patchoulene synthase activityy Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphoric acid + alpha-patchoulene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10603 molecular_function owl:Class GO:0019710 biolink:NamedThing peptidyl-asparagine methylation The methylation of peptidyl-asparagine to form peptidyl-N4-methyl-L-asparagine or peptidyl-N4,N4-dimethyl-L-asparagine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0070|RESID:AA0311 GO:0018018 biological_process owl:Class GO:0016085 biolink:NamedThing myoinhibitory hormone activity The action characteristic of myostimulatory hormone, a peptide hormone that inhibits muscle contraction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071932 biolink:NamedThing replication fork reversal Replication fork processing that involves the unwinding of blocked forks to form four-stranded structures resembling Holliday junctions, which are subsequently resolved. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-29T02:34:22Z biological_process owl:Class GO:0030380 biolink:NamedThing interleukin-17E receptor binding Binding to an interleukin-17E receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-17E receptor ligand|IL-17E molecular_function owl:Class GO:0050966 biolink:NamedThing detection of mechanical stimulus involved in sensory perception of pain The series of events involved in the perception of pain in which a mechanical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory transduction of mechanical stimulus during perception of pain|perception of pain, sensory detection of mechanical stimulus|perception of pain, detection of mechanical stimulus|sensory detection of mechanical stimulus during perception of pain|mechanical nociception|perception of pain, sensory transduction of mechanical stimulus biological_process owl:Class GO:0002464 biolink:NamedThing peripheral tolerance induction to nonself antigen Tolerance induction to nonself antigens in the periphery. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004065 biolink:NamedThing arylsulfatase activity Catalysis of the reaction: a phenol sulfate + H2O = a phenol + sulfate. tmpzr1t_l9r_go_relaxed.owl nitrocatechol sulfatase activity|4-methylumbelliferyl sulfatase activity|aryl-sulphate sulphohydrolase activity|aryl-sulfate sulfohydrolase activity|phenolsulfatase activity|sulfatase activity|arylsulphatase activity|estrogen sulfatase activity|arylsulfohydrolase activity|aryl-sulfate sulphohydrolase activity|phenylsulfatase activity|p-nitrophenyl sulfatase activity RHEA:17261|MetaCyc:ARYLSULFAT-RXN|EC:3.1.6.1 molecular_function owl:Class GO:0034558 biolink:NamedThing technetium (VII) reductase activity Catalysis of the reaction: pertechnetate ion + 3/2 H2 = technetium (IV) oxide + H2O + OH-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0859 molecular_function owl:Class GO:0051646 biolink:NamedThing mitochondrion localization Any process in which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl mitochondria localization|mitochondrion localisation|localization of mitochondrion|establishment and maintenance of mitochondria localization|establishment and maintenance of mitochondrion localization|mitochondrial localization|localization of mitochondria biological_process owl:Class GO:1990704 biolink:NamedThing integral component of Golgi trans cisterna membrane The component of the Golgi trans membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral component of trans-Golgi cisterna membrane bhm 2015-03-16T16:08:07Z cellular_component owl:Class GO:2000173 biolink:NamedThing negative regulation of branching morphogenesis of a nerve Any process that stops, prevents, or reduces the frequency, rate or extent of branching morphogenesis of a nerve. tmpzr1t_l9r_go_relaxed.owl rl 2010-10-07T12:07:56Z biological_process owl:Class GO:0021670 biolink:NamedThing lateral ventricle development The process whose specific outcome is the progression of the lateral ventricles over time, from the formation to the mature structure. The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036082 biolink:NamedThing extracellular phenylacetaldehyde-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when extracellular phenylacetaldehyde has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl ionotropic phenylacetaldehyde receptor activity bf 2011-12-20T04:49:31Z molecular_function owl:Class GO:1903944 biolink:NamedThing negative regulation of hepatocyte apoptotic process Any process that stops, prevents or reduces the frequency, rate or extent of hepatocyte apoptotic process. tmpzr1t_l9r_go_relaxed.owl down regulation of hepatocyte apoptotic process|inhibition of hepatocyte apoptosis|down-regulation of hepatocyte apoptosis|down regulation of hepatocyte apoptosis|downregulation of hepatocyte apoptosis|negative regulation of hepatocyte apoptosis|down-regulation of hepatocyte apoptotic process|downregulation of hepatocyte apoptotic process|inhibition of hepatocyte apoptotic process sl 2015-02-19T12:54:50Z biological_process owl:Class GO:0030248 biolink:NamedThing cellulose binding Binding to cellulose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071817 biolink:NamedThing MMXD complex A protein complex that contains the proteins MMS19, MIP18 and XPD, localizes to mitotic spindle during mitosis, and is required for proper chromosome segregation. tmpzr1t_l9r_go_relaxed.owl MMS19-MIP18-XPD complex mah 2010-09-07T10:53:42Z cellular_component owl:Class GO:0002106 biolink:NamedThing endonucleolytic cleaveage between SSU-rRNA and LSU-rRNA of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Endonucleolytic cleavages between the SSU-rRNA and the LSU-rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. These cleavages liberate tRNAs from the polycistronic transcript as well as separating the SSU and LSU containing transcript. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905591 biolink:NamedThing regulation of optical nerve axon regeneration Any process that modulates the frequency, rate or extent of optical nerve axon regeneration. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-25T12:58:43Z biological_process owl:Class GO:0042781 biolink:NamedThing 3'-tRNA processing endoribonuclease activity Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule. tmpzr1t_l9r_go_relaxed.owl ribonuclease Z activity|RNase Z activity|tRNAse Z|3' tRNase activity|tRNA 3' endonuclease activity|3 tRNase activity|tRNA 3 endonuclease activity|3' tRNA processing endoribonuclease activity https://github.com/geneontology/go-ontology/issues/21383 MetaCyc:3.1.26.11-RXN|EC:3.1.26.11 molecular_function owl:Class GO:0018766 biolink:NamedThing dihydrophloroglucinol hydrolase activity Catalysis of the reaction: dihydrophloroglucinol + OH- = 3-hydroxy-5-oxohexanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0008|KEGG_REACTION:R07831|MetaCyc:R6-RXN molecular_function owl:Class GO:0032715 biolink:NamedThing negative regulation of interleukin-6 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-6 production|negative regulation of interleukin-6 secretion|down regulation of interleukin-6 production|negative regulation of interleukin-6 biosynthetic process|inhibition of interleukin-6 production|downregulation of interleukin-6 production|negative regulation of IL-6 production GO:0045409|GO:1900165 biological_process owl:Class GO:0044198 biolink:NamedThing zf-TRAF domain binding Binding to a TRAF-type zinc finger domain of a protein. tmpzr1t_l9r_go_relaxed.owl zinc-finger-TRAF domain binding|TRAF-type zinc finger domain binding|zinc finger TRAF-type domain binding jl 2009-10-20T04:09:08Z molecular_function owl:Class GO:0031391 biolink:NamedThing Elg1 RFC-like complex A pentameric replication factor C (RLC) complex, which unloads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) from chromatin and has roles in telomere length regulation and other aspects of genome stability. In Saccharomyces the subunits are known as Elg1p, Rfc2p, Rfc3p, Rfc4p, and Rfc5p. tmpzr1t_l9r_go_relaxed.owl Elg1-RLC|RFC (Elg1)|Elg1-RFC cellular_component owl:Class GO:0071193 biolink:NamedThing Kv4.2-KChIP2 channel complex A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP2 associated with the channel via interaction with the Kv alpha subunit 4.2. tmpzr1t_l9r_go_relaxed.owl CORUM:607 mah 2009-11-23T04:58:09Z cellular_component owl:Class GO:0050453 biolink:NamedThing cob(II)alamin reductase activity Catalysis of the reaction: 2 cob(I)alamin + H(+) + NAD(+) = 2 cob(II)alamin + NADH. tmpzr1t_l9r_go_relaxed.owl B12r reductase activity|NADH:cob(II)alamin oxidoreductase activity|vitamin B(12r) reductase activity|vitamin B12 reduction|cob(I)alamin:NAD+ oxidoreductase activity|B(12r) reductase activity|vitamin B12 reductase activity|NADH2:cob(II)alamin oxidoreductase activity|vitamin B12r reductase activity KEGG_REACTION:R00099|Reactome:R-HSA-3149560|EC:1.16.1.4|MetaCyc:COBIIALAMIN-REDUCTASE-RXN|RHEA:17481 molecular_function owl:Class GO:0022852 biolink:NamedThing glycine-gated chloride ion channel activity Enables the transmembrane transfer of a chloride ion by a channel that opens when glycine has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900329 biolink:NamedThing positive regulation of mannotriose transport Any process that activates or increases the frequency, rate or extent of mannotriose transport. tmpzr1t_l9r_go_relaxed.owl upregulation of mannotriose transport|up-regulation of mannotriose transport|up regulation of mannotriose transport|activation of mannotriose transport tt 2012-04-06T01:50:22Z biological_process owl:Class GO:0008767 biolink:NamedThing UDP-galactopyranose mutase activity Catalysis of the reaction: UDP-D-galactopyranose = UDP-D-galacto-1,4-furanose. tmpzr1t_l9r_go_relaxed.owl UDP-D-galactopyranose furanomutase activity|UDPgalactopyranose mutase activity MetaCyc:GALPMUT-RXN|RHEA:24132|EC:5.4.99.9 molecular_function owl:Class GO:0090371 biolink:NamedThing regulation of glycerol transport Any process that modulates the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T11:30:22Z biological_process owl:Class GO:0010348 biolink:NamedThing lithium:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Li+(in) + H+(out) = Li+(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl lithium:hydrogen antiporter activity molecular_function owl:Class GO:0016104 biolink:NamedThing triterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units. tmpzr1t_l9r_go_relaxed.owl triterpenoid formation|triterpene biosynthesis|triterpenoid biosynthesis|triterpenoid anabolism|triterpene biosynthetic process|triterpenoid synthesis biological_process owl:Class GO:0071092 biolink:NamedThing alpha3-beta1 integrin-tissue transglutaminase complex A protein complex that consists of an alpha3-beta1 integrin complex bound to tissue transglutaminase. tmpzr1t_l9r_go_relaxed.owl ITGA3-ITGB1-TGM2 complex mah 2009-11-06T04:47:04Z cellular_component owl:Class GO:0097671 biolink:NamedThing SCF-YDR131C ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is YDR131C in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:29:35Z cellular_component owl:Class GO:1904864 biolink:NamedThing negative regulation of beta-catenin-TCF complex assembly Any process that stops, prevents or reduces the frequency, rate or extent of beta-catenin-TCF complex assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of beta-catenin/T-cell factor complex assembly|negative regulation of beta-catenin/LEF complex formation|downregulation of beta-catenin/LEF complex assembly|down regulation of beta-catenin/lymphoid enhancer binding factor complex formation|down regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|down-regulation of beta-catenin/lymphoid enhancer binding factor complex formation|inhibition of beta-catenin/T-cell factor complex assembly|negative regulation of beta-catenin/T-cell factor complex formation|inhibition of beta-catenin-TCF complex assembly|down-regulation of beta-catenin/T-cell factor complex formation|downregulation of beta-catenin/lymphoid enhancer binding factor complex formation|down regulation of beta-catenin-TCF complex assembly|down-regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|down regulation of beta-catenin/LEF complex assembly|down regulation of beta-catenin/LEF complex formation|negative regulation of beta-catenin/lymphoid enhancer binding factor complex assembly|down-regulation of beta-catenin/LEF complex formation|down regulation of beta-catenin/T-cell factor complex assembly|inhibition of beta-catenin/lymphoid enhancer binding factor complex assembly|negative regulation of beta-catenin/T-cell factor complex assembly|inhibition of beta-catenin-TCF complex formation|downregulation of beta-catenin/T-cell factor complex assembly|inhibition of beta-catenin/LEF complex assembly|downregulation of beta-catenin/lymphoid enhancer binding factor complex assembly|inhibition of beta-catenin/lymphoid enhancer binding factor complex formation|downregulation of beta-catenin/T-cell factor complex formation|downregulation of beta-catenin-TCF complex formation|inhibition of beta-catenin/T-cell factor complex formation|down regulation of beta-catenin/T-cell factor complex formation|downregulation of beta-catenin/LEF complex formation|negative regulation of beta-catenin/lymphoid enhancer binding factor complex formation|down-regulation of beta-catenin/LEF complex assembly|negative regulation of beta-catenin-TCF complex formation|negative regulation of beta-catenin/LEF complex assembly|down-regulation of beta-catenin-TCF complex assembly|downregulation of beta-catenin-TCF complex assembly|down regulation of beta-catenin-TCF complex formation|inhibition of beta-catenin/LEF complex formation|down-regulation of beta-catenin-TCF complex formation bf 2015-12-17T13:50:46Z biological_process owl:Class GO:0017023 biolink:NamedThing myosin phosphatase complex An enzyme complex that catalyzes the removal of the phosphate group from phosphomyosin. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071372 biolink:NamedThing cellular response to follicle-stimulating hormone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to FSH stimulus|cellular response to follicle stimulating hormone stimulus mah 2009-12-11T03:15:56Z biological_process owl:Class GO:0033933 biolink:NamedThing branched-dextran exo-1,2-alpha-glucosidase activity Catalysis of the hydrolysis of (1->2)-alpha-D-glucosidic linkages at the branch points of dextrans and related polysaccharides, producing free D-glucose. tmpzr1t_l9r_go_relaxed.owl dextran alpha-1,2 debranching enzyme|1,2-alpha-D-glucosyl-branched-dextran 2-glucohydrolase activity|dextran 1,2-alpha-glucosidase activity MetaCyc:3.2.1.115-RXN|EC:3.2.1.115 molecular_function owl:Class GO:0097109 biolink:NamedThing neuroligin family protein binding Binding to a member of the neuroligin protein family, neuronal cell surface proteins that mediate synapse formation. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-28T05:15:22Z molecular_function owl:Class GO:0044537 biolink:NamedThing regulation of circulating fibrinogen levels Any process that modulates the quantity of fibrinogen circulating in the bloodstream. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-21T03:15:09Z biological_process owl:Class GO:0046077 biolink:NamedThing dUDP metabolic process The chemical reactions and pathways involving dUDP, deoxyuridine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl dUDP metabolism biological_process owl:Class GO:0061810 biolink:NamedThing NAD glycohydrolase activity Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose without proceeding through a cyclic ADP-ribose intermediate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9637699|EC:3.2.2.5 dph 2016-11-11T13:18:54Z molecular_function owl:Class GO:1901328 biolink:NamedThing response to cytochalasin B Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytochalasin B stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-30T16:36:35Z biological_process owl:Class GO:0071834 biolink:NamedThing mating pheromone secretion The regulated release of a mating pheromone, a peptide hormone that induces a behavioral or physiological response(s) from a responding organism or cell, that contributes to a process of sexual reproduction. tmpzr1t_l9r_go_relaxed.owl mating-type pheromone secretion mah 2010-09-09T11:22:35Z biological_process owl:Class GO:0039592 biolink:NamedThing suppression by virus of G2/M transition of host mitotic cell cycle Any viral process that decreases the rate or extent of progression from G2 phase to M phase of the host mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl host G2/M cell cycle arrest by virus VZ:876 bf 2012-06-25T02:07:18Z biological_process owl:Class GO:0120152 biolink:NamedThing calcium-dependent outer dynein arm binding Binding to an outer dynein arm in the presence of calcium. tmpzr1t_l9r_go_relaxed.owl krc 2018-04-27T16:33:39Z molecular_function owl:Class GO:1990160 biolink:NamedThing DnaB-DnaC-Rep-PriC complex A protein-DNA complex consisting of the helicase loading complex DnaB-DnaC, replication restart proteins Rep and PriC, and associated DNA. Involved in the restart of DNA replication after a stalled replication fork has been repaired. tmpzr1t_l9r_go_relaxed.owl DnaB-DnaC-Rep-PriC preprimosome|phi-X174-type preprimosome bhm 2013-08-02T12:05:25Z cellular_component owl:Class GO:0098706 biolink:NamedThing iron ion import across cell outer membrane The directed movement of iron ions from outside of a cell, across the cell outer membrane and into the periplasmic space. tmpzr1t_l9r_go_relaxed.owl ferric iron transmembrane transport|ferric iron import into cell|high affinity ferric iron transport|high-affinity ferric iron transmembrane transport|ferric ion import into cell|ferric iron import across cell outer membrane pr 2012-12-20T08:33:03Z GO:0097461|GO:0015683 biological_process owl:Class GO:0035396 biolink:NamedThing positive regulation of chemokine (C-X-C motif) ligand 9 production Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9. tmpzr1t_l9r_go_relaxed.owl positive regulation of MIG production|positive regulation of CXCL9 production bf 2010-03-23T10:07:17Z biological_process owl:Class GO:0018138 biolink:NamedThing peptide cross-linking via L-serine thiazolecarboxylic acid The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl serine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation. tmpzr1t_l9r_go_relaxed.owl RESID:AA0242 biological_process owl:Class GO:0050024 biolink:NamedThing L-galactonolactone oxidase activity Catalysis of the reaction: L-galactono-1,4-lactone + O(2) = L-ascorbate + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl L-galactono-1,4-lactone oxidase activity|L-galactono-1,4-lactone:oxygen 3-oxidoreductase activity|L-xylono-1,4-lactone oxidase activity EC:1.3.3.12|MetaCyc:1.3.3.12-RXN|RHEA:20617|KEGG_REACTION:R00643 GO:0033733 molecular_function owl:Class GO:0050562 biolink:NamedThing lysine-tRNA(Pyl) ligase activity Catalysis of the reaction: tRNA(Pyl) + L-lysine + ATP = L-lysyl-tRNA(Pyl) + diphosphate + AMP. tmpzr1t_l9r_go_relaxed.owl L-lysine:tRNAPyl ligase (AMP-forming)|lysine-tRNAPyl ligase activity MetaCyc:6.1.1.25-RXN molecular_function owl:Class GO:0044029 biolink:NamedThing hypomethylation of CpG island An decrease in the epigenetic methylation of cytosine and adenosine residues in a CpG island in DNA. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes. tmpzr1t_l9r_go_relaxed.owl DNA hypomethylation of CpG island biological_process owl:Class GO:1902567 biolink:NamedThing negative regulation of eosinophil activation Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil activation. tmpzr1t_l9r_go_relaxed.owl inhibition of eosinophil activation|downregulation of eosinophil activation|down regulation of eosinophil activation|down-regulation of eosinophil activation ecu 2013-12-10T15:54:43Z biological_process owl:Class GO:0018353 biolink:NamedThing protein-phycocyanobilin linkage via S-phycocyanobilin-L-cysteine The linkage of the chromophore phycocyanobilin to phycocyanin or allophycocyanin via S-phycocyanobilin-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0131 GO:0018380 biological_process owl:Class GO:0016509 biolink:NamedThing long-chain-3-hydroxyacyl-CoA dehydrogenase activity Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD(P)+ = 3-oxoacyl-CoA + NAD(P)H + H+, where the acyl group is a long-chain fatty acid residue. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl LCHAD|long-chain-(S)-3-hydroxyacyl-CoA:NAD+ oxidoreductase activity|beta-hydroxyacyl-CoA dehydrogenase activity|long-chain 3-hydroxyacyl coenzyme A dehydrogenase activity Reactome:R-HSA-548818|MetaCyc:1.1.1.211-RXN|EC:1.1.1.211 Also see '3-hydroxyacyl-CoA dehydrogenase activity ; GO:0003857'. molecular_function owl:Class GO:1905237 biolink:NamedThing response to cyclosporin A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclosporin A stimulus. tmpzr1t_l9r_go_relaxed.owl response to cyclophilin sl 2016-06-07T21:32:06Z biological_process owl:Class GO:1990048 biolink:NamedThing anterograde neuronal dense core vesicle transport The directed movement of substances in neuronal dense core vesicles along axonal microtubules towards the presynapse. tmpzr1t_l9r_go_relaxed.owl anterograde dense core granule transport|anterograde dense core granule trafficking biological_process owl:Class GO:0021709 biolink:NamedThing cerebellar basket cell differentiation The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar basket cell. Differentiation includes the processes involved in commitment of a neuroblast to a cerebellar basket cell fate. A cerebellar basket cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003940 biolink:NamedThing L-iduronidase activity Catalysis of the hydrolysis of alpha-L-iduronosidic linkages in dermatan sulfate. tmpzr1t_l9r_go_relaxed.owl alpha-L-iduronidase activity|glycosaminoglycan alpha-L-iduronohydrolase activity Reactome:R-HSA-9036037|Reactome:R-HSA-1678716|Reactome:R-HSA-2090037|Reactome:R-HSA-1793186|MetaCyc:3.2.1.76-RXN|Reactome:R-HSA-9036041|EC:3.2.1.76|Reactome:R-HSA-2206299 molecular_function owl:Class GO:1990706 biolink:NamedThing MAD1 complex A protein complex involved in the assembly of the mitotic checkpoint complex that in turn inhibits the anaphase promoting complex/cyclosome (APC/C). tmpzr1t_l9r_go_relaxed.owl MAD1 homodimer bhm 2015-03-17T15:49:16Z cellular_component owl:Class GO:0015626 biolink:NamedThing L-diaminopimelate transmembrane transporter activity Enables the transfer of L-diaminopimelate from one side of a membrane to the other. L-diaminopimelate is the L-enantiomer anion of 2,6-diaminoheptanedioic acid. tmpzr1t_l9r_go_relaxed.owl L-diaminopimelate transporter activity|cystine/diaminopimelate porter activity molecular_function owl:Class GO:0090603 biolink:NamedThing sieve element differentiation The process whereby a relatively unspecialized cell acquires specialized features of a sieve element. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-05T16:38:20Z biological_process owl:Class GO:0030339 biolink:NamedThing fatty-acyl-ethyl-ester synthase activity Catalysis of the reaction: a long-chain-acyl ethyl ester + H2O = a long-chain carboxylic acid + ethanol. tmpzr1t_l9r_go_relaxed.owl FAEES activity|fatty-acyl ethyl ester synthase|FAEE synthase activity|long-chain-fatty-acyl-ethyl-ester acylhydrolase activity MetaCyc:FATTY-ACYL-ETHYL-ESTER-SYNTHASE-RXN|EC:3.1.1.67|RHEA:16641 molecular_function owl:Class GO:0034332 biolink:NamedThing adherens junction organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. tmpzr1t_l9r_go_relaxed.owl adherens junction organisation biological_process owl:Class GO:1904619 biolink:NamedThing response to dimethyl sulfoxide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dimethyl sulfoxide stimulus. tmpzr1t_l9r_go_relaxed.owl response to DMSO sl 2015-08-27T19:13:49Z biological_process owl:Class GO:0071586 biolink:NamedThing CAAX-box protein processing The second process in a series of specific posttranslational modifications to the CAAX box region of CAAX box proteins, in which the last three amino acids of the protein (AAX) are removed by proteolysis. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T04:42:45Z biological_process owl:Class GO:0102237 biolink:NamedThing ATP:farnesol kinase activity Catalysis of the reaction: 2-trans,-6-trans-farnesol + ATP = 2-trans,-6-trans-farnesyl monophosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl ATP-dependent farnesol kinase activity https://github.com/geneontology/go-ontology/issues/21619 RHEA:61656|MetaCyc:RXN-12304 molecular_function owl:Class GO:0047456 biolink:NamedThing 2-methylisocitrate dehydratase activity Catalysis of the reaction: (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = cis-2-methylaconitate + H(2)O. tmpzr1t_l9r_go_relaxed.owl (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]|(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate hydro-lyase activity RHEA:17941|KEGG_REACTION:R04425|MetaCyc:4.2.1.99-RXN|EC:4.2.1.99 molecular_function owl:Class GO:0035081 biolink:NamedThing induction of programmed cell death by hormones Any process induced by hormones that directly activates any of the steps required for programmed cell death. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0012502 biolink:NamedThing induction of programmed cell death A process which directly activates any of the steps required for programmed cell death. tmpzr1t_l9r_go_relaxed.owl induction of nonapoptotic programmed cell death|induction of non-apoptotic programmed cell death GO:0012503 biological_process owl:Class GO:0070029 biolink:NamedThing alphav-beta3 integrin-osteopontin complex A protein complex that consists of an alphav-beta3 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-SPP1 complex cellular_component owl:Class GO:0018577 biolink:NamedThing catechol 2,3-dioxygenase activity Catalysis of the reaction: catechol + O2 = 2-hydroxymuconate semialdehyde. tmpzr1t_l9r_go_relaxed.owl metapyrocatechase activity|2,3-pyrocatechase activity|catechol 2,3-oxygenase|cato2ase activity|catechol:oxygen 2,3-oxidoreductase (decyclizing)|catechol oxygenase|pyrocatechol 2,3-dioxygenase UM-BBD_enzymeID:e0156|EC:1.13.11.2|MetaCyc:CATECHOL-23-DIOXYGENASE-RXN|RHEA:17337 molecular_function owl:Class GO:0019102 biolink:NamedThing male somatic sex determination The determination of sex and sexual phenotypes in a male organism's soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071257 biolink:NamedThing cellular response to electrical stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to electricity mah 2009-12-04T03:27:03Z biological_process owl:Class GO:0009336 biolink:NamedThing sulfate adenylyltransferase complex (ATP) An enzyme complex that catalyzes the formation adenylylsulfate from sulfate and ATP. tmpzr1t_l9r_go_relaxed.owl sulphate adenylyltransferase complex (ATP) cellular_component owl:Class GO:0034202 biolink:NamedThing glycolipid floppase activity Catalysis of the movement of a glycolipid from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled intramembrane glycolipid transporter activity|ATP-dependent intramembrane glycolipid transporter activity|glycolipid floppase activity (cytosolic to exoplasmic leaftlet)|glycolipid-translocating activity Reactome:R-HSA-4570573|Reactome:R-HSA-446212 molecular_function owl:Class GO:0032709 biolink:NamedThing negative regulation of interleukin-25 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-25 production. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-25 production|downregulation of interleukin-25 production|negative regulation of interleukin-25 biosynthetic process|down regulation of interleukin-25 production|negative regulation of IL-25 production|negative regulation of interleukin-25 secretion|inhibition of interleukin-25 production GO:0045533|GO:0150149 biological_process owl:Class GO:1904093 biolink:NamedThing negative regulation of autophagic cell death Any process that stops, prevents or reduces the frequency, rate or extent of autophagic cell death. tmpzr1t_l9r_go_relaxed.owl inhibition of autophagic cell death|down-regulation of autophagic cell death|negative regulation of programmed cell death by macroautophagy|inhibition of type II programmed cell death|downregulation of autophagic cell death|inhibition of programmed cell death by macroautophagy|negative regulation of type II programmed cell death|down regulation of autophagic cell death|downregulation of type II programmed cell death|down regulation of programmed cell death by macroautophagy|down-regulation of type II programmed cell death|down regulation of type II programmed cell death|downregulation of programmed cell death by macroautophagy|down-regulation of programmed cell death by macroautophagy bhm 2015-03-26T16:41:39Z biological_process owl:Class GO:0071563 biolink:NamedThing Myo2p-Vac17p-Vac8p transport complex A protein complex that is involved in transport of vacuoles to a newly formed daughter cell. In yeast, this complex is composed of Myo2p, Vac17p, and Vac8p. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T03:03:24Z cellular_component owl:Class GO:0060204 biolink:NamedThing clathrin-sculpted glutamate transport vesicle lumen The volume enclosed by the membrane of the clathrin-sculpted glutamate transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted glutamate constitutive secretory pathway transport vesicle lumen|clathrin sculpted glutamate transport vesicle lumen cellular_component owl:Class GO:0032659 biolink:NamedThing regulation of interleukin-16 production Any process that modulates the frequency, rate, or extent of interleukin-16 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-16 biosynthetic process|regulation of IL-16 production GO:0045375 biological_process owl:Class GO:0002541 biolink:NamedThing activation of plasma proteins involved in acute inflammatory response Any process activating plasma proteins by proteolysis as part of an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007210 biolink:NamedThing serotonin receptor signaling pathway The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl serotonin receptor signalling pathway biological_process owl:Class GO:1903351 biolink:NamedThing cellular response to dopamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dopamine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-08-19T19:33:35Z biological_process owl:Class GO:0008897 biolink:NamedThing holo-[acyl-carrier-protein] synthase activity Catalysis of the reaction: CoA + substrate-serine = adenosine 3',5'-bisphosphate + substrate-serine-4'-phosphopantetheine. The transfer of the 4'-phosphopantetheine (Ppant) co-factor from coenzyme A to the hydroxyl side chain of the serine residue of acyl- or peptidyl-carrier protein (ACP or PCP) to convert them from the apo to the holo form. tmpzr1t_l9r_go_relaxed.owl alpha-aminoadipate reductase phosphopantetheinyl transferase activity|PPTase activity|alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase activity|phosphopantetheinyl transferase|CoA:apo-acyl-carrier-protein pantetheinephosphotransferase activity|acyl carrier protein synthetase activity|acyl carrier protein holoprotein (holo-ACP) synthetase activity|ACPS activity|holo-ACP synthetase activity|phosphopantetheinyltransferase activity|acyl carrier protein synthase activity|CoA-[4'-phosphopantetheine]:apo-acyl-carrier-protein 4'-pantetheinephosphotransferase activity|holosynthase activity|L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase activity|coenzyme A:fatty acid synthetase apoenzyme 4'-phosphopantetheine transferase activity|holo-ACP synthase activity|4'-phosphopantetheinyltransferase activity|holo-[peptidyl-carrier protein] synthase activity|4'-phosphopantetheinyl transferase activity|alphaaminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase activity|AcpS|holo-acyl-carrier-protein synthase activity|P-pant transferase activity https://github.com/geneontology/go-ontology/issues/18113 Reactome:R-HSA-199202|RHEA:12068|EC:2.7.8.7|MetaCyc:HOLO-ACP-SYNTH-RXN GO:0008958 molecular_function owl:Class GO:0018215 biolink:NamedThing protein phosphopantetheinylation The modification of a protein amino acid by phosphopantetheinylation. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphopantetheinylation biological_process owl:Class GO:0042788 biolink:NamedThing polysomal ribosome A ribosome bound to mRNA that forms part of a polysome. tmpzr1t_l9r_go_relaxed.owl active ribosome cellular_component owl:Class GO:0005844 biolink:NamedThing polysome A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro. tmpzr1t_l9r_go_relaxed.owl polyribosome NIF_Subcellular:sao1038025871|Wikipedia:Polysome cellular_component owl:Class GO:0033334 biolink:NamedThing fin morphogenesis The process in which the anatomical structures of a fin are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099078 biolink:NamedThing BORC complex A protein complex that is involved in positioning of the lysosome within the cytoplasm and which is composed of BLOC1S1, BLOC1S2, BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and SNAPIN. The BORC complex recruits ARL8 at the cytosolic face of lysosomes and couples them to microtubule plus-end-directed kinesin motors. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030018 biolink:NamedThing Z disc Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached. tmpzr1t_l9r_go_relaxed.owl Z band|Z disk|Z line cellular_component owl:Class GO:0006367 biolink:NamedThing transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. tmpzr1t_l9r_go_relaxed.owl transcription initiation from Pol II promoter Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation. biological_process owl:Class GO:0090346 biolink:NamedThing cellular organofluorine metabolic process The chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:0034423 biolink:NamedThing autophagosome lumen The volume enclosed within the autophagosome double-membrane. tmpzr1t_l9r_go_relaxed.owl autophagic vacuole lumen Note that this term should be used for annotating gene products with caution: it should be used only to annotate gene products demonstrated to reside and function normally in the autophagic vacuole lumen, not for molecules that are temporarily found in the lumen prior to degradation. cellular_component owl:Class GO:2001074 biolink:NamedThing regulation of metanephric ureteric bud development Any process that modulates the frequency, rate or extent of metanephric ureteric bud development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-14T01:11:06Z biological_process owl:Class GO:0048744 biolink:NamedThing negative regulation of skeletal muscle fiber development Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle fiber development. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast. tmpzr1t_l9r_go_relaxed.owl negative regulation of skeletal muscle fibre development|negative regulation of skeletal myofiber development|downregulation of skeletal muscle fiber development|negative regulation of skeletal myofibre development|down-regulation of skeletal muscle fiber development|down regulation of skeletal muscle fiber development|inhibition of skeletal muscle fiber development biological_process owl:Class GO:1902358 biolink:NamedThing sulfate transmembrane transport The directed movement of sulfate across a membrane. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-14T14:46:04Z biological_process owl:Class GO:0003379 biolink:NamedThing establishment of cell polarity involved in gastrulation cell migration The specification and formation of anisotropic intracellular organization that contributes to the self-propelled directed movement of an ameboid cell taking part in gastrulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T06:54:44Z biological_process owl:Class GO:0003003 biolink:NamedThing follicular fluid formation in ovarian follicle antrum involved in fused antrum stage The ovulation cycle process in which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed as part of the fused antrum stage of oogenesis. tmpzr1t_l9r_go_relaxed.owl follicular fluid formation in ovarian follicle antrum during fused antrum stage biological_process owl:Class GO:0035708 biolink:NamedThing interleukin-4-dependent isotype switching to IgE isotypes The switching of activated B cells from IgM biosynthesis to IgE biosynthesis, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and IgE constant region gene segments in the immunoglobulin heavy chain locus, that is dependent on the activity of interleukin 4 (IL-4). tmpzr1t_l9r_go_relaxed.owl IL-4-dependent isotype switching to IgE isotypes bf 2011-03-02T02:40:35Z biological_process owl:Class GO:0009780 biolink:NamedThing photosynthetic NADP+ reduction An NADPH regeneration process that contributes to the light reactions of photosynthesis. The light reactions of photosynthesis use energy from photons to generate high-energy electrons. These electrons are used directly to reduce NADP+ to NADPH. NADPH is a relatively stable molecule and can pass on its hydrogen atom to other molecules in chemical reactions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010620 biolink:NamedThing negative regulation of transcription by transcription factor catabolism Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves the catabolism of a sequence-specific DNA-binding transcription factor by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902946 biolink:NamedThing protein localization to early endosome A process in which a protein is transported to, or maintained in, a location within an early endosome. tmpzr1t_l9r_go_relaxed.owl protein localization in early endosome|protein localisation in early endosome|protein localisation to early endosome sjp 2014-05-02T08:26:00Z biological_process owl:Class GO:0005085 biolink:NamedThing guanyl-nucleotide exchange factor activity Stimulates the exchange of GDP to GTP on a signaling GTPase, changing its conformation to its active form. Guanine nucleotide exchange factors (GEFs) act by stimulating the release of guanosine diphosphate (GDP) to allow binding of guanosine triphosphate (GTP), which is more abundant in the cell under normal cellular physiological conditions. tmpzr1t_l9r_go_relaxed.owl Rho guanyl-nucleotide exchange factor activity|GNRP|GDS|Rho guanine nucleotide exchange factor|cAMP-dependent guanyl-nucleotide exchange factor activity|guanyl-nucleotide releasing factor|GEF|Ral guanyl-nucleotide exchange factor activity|Sar guanyl-nucleotide exchange factor activity|RhoGEF|Rap guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|GDP-dissociation stimulator activity|guanyl-nucleotide release factor activity|ARF guanyl-nucleotide exchange factor activity|Rab guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity|Ras guanyl-nucleotide exchange factor activity https://github.com/geneontology/go-ontology/issues/18749|https://github.com/geneontology/go-ontology/issues/18750 Reactome:R-HSA-416588|Reactome:R-HSA-5617816|Reactome:R-HSA-8877475|Reactome:R-HSA-9695853|Reactome:R-HSA-5655277|Reactome:R-HSA-8877760|Reactome:R-HSA-5623521|Reactome:R-HSA-825631|Reactome:R-HSA-3928633|Reactome:R-HSA-9619803|Reactome:R-HSA-1225951|Reactome:R-HSA-194518|Reactome:R-HSA-1250498|Reactome:R-HSA-5655241|Reactome:R-HSA-442314|Reactome:R-HSA-177945|Reactome:R-HSA-392054|Reactome:R-HSA-8851899|Reactome:R-HSA-205039|Reactome:R-HSA-8876190|Reactome:R-HSA-418850|Reactome:R-HSA-416530|Reactome:R-HSA-8876193|Reactome:R-HSA-5686318|Reactome:R-HSA-8964604|Reactome:R-HSA-8875568|Reactome:R-HSA-9640167|Reactome:R-HSA-5672965|Reactome:R-HSA-8850041|Reactome:R-HSA-9672170|Reactome:R-HSA-171026|Reactome:R-HSA-9026891|Reactome:R-HSA-389348|Reactome:R-HSA-194913|Reactome:R-HSA-8877998|Reactome:R-HSA-8876454|Reactome:R-HSA-5694409|Reactome:R-HSA-8851827|Reactome:R-HSA-420883|Reactome:R-HSA-2029445|Reactome:R-HSA-3965444|Reactome:R-HSA-8876188|Reactome:R-HSA-186834|Reactome:R-HSA-2730840|Reactome:R-HSA-9665408|Reactome:R-HSA-109817|Reactome:R-HSA-419166|Reactome:R-HSA-1250383|Reactome:R-HSA-210977|Reactome:R-HSA-9665009|Reactome:R-HSA-3928651|Reactome:R-HSA-9639286|Reactome:R-HSA-8877612|Reactome:R-HSA-749453|Reactome:R-HSA-379048|Reactome:R-HSA-8876837|Reactome:R-HSA-8877311|Reactome:R-HSA-3928592|Reactome:R-HSA-5218850|Reactome:R-HSA-5654600|Reactome:R-HSA-169904|Reactome:R-HSA-8875591|Reactome:R-HSA-5218839|Reactome:R-HSA-9624845|Reactome:R-HSA-9032067|Reactome:R-HSA-5218829|Reactome:R-HSA-8876615|Reactome:R-HSA-2485180|Reactome:R-HSA-5654647|Reactome:R-HSA-5637806|Reactome:R-HSA-379044|Reactome:R-HSA-8875320|Reactome:R-HSA-6811418|Reactome:R-HSA-9033292|Reactome:R-HSA-3928642|Reactome:R-HSA-5655347|Reactome:R-HSA-354173|Reactome:R-HSA-9666428|Reactome:R-HSA-8853307|Reactome:R-HSA-5654392|Reactome:R-HSA-9607304|Reactome:R-HSA-5654402|Reactome:R-HSA-8848618|Reactome:R-HSA-109807|Reactome:R-HSA-9664991|Reactome:R-HSA-428750|Reactome:R-HSA-8877308|Reactome:R-HSA-1225957|Reactome:R-HSA-445064|Reactome:R-HSA-6807868|Reactome:R-HSA-3928632|Reactome:R-HSA-4093336|Reactome:R-HSA-1433415|Reactome:R-HSA-2179407|Reactome:R-HSA-1433471|Reactome:R-HSA-6811429|Reactome:R-HSA-8875318|Reactome:R-HSA-2029467|Reactome:R-HSA-170979|Reactome:R-HSA-2424477|Reactome:R-HSA-3928628|Reactome:R-HSA-8876191|Reactome:R-HSA-5637808|Reactome:R-HSA-9660824|Reactome:R-HSA-177938|Reactome:R-HSA-1250463|Reactome:R-HSA-5655326|Reactome:R-HSA-6811414|Reactome:R-HSA-8982637|Reactome:R-HSA-939265|Reactome:R-HSA-2424476|Reactome:R-HSA-8877451|Reactome:R-HSA-428917|Reactome:R-HSA-5654618|Reactome:R-HSA-418579|Reactome:R-HSA-5686071|Reactome:R-HSA-180687|Reactome:R-HSA-418856|Reactome:R-HSA-8876616|Reactome:R-HSA-9666430|Reactome:R-HSA-187746|Reactome:R-HSA-156913|Reactome:R-HSA-399938|Reactome:R-HSA-3928612|Reactome:R-HSA-8982640|Reactome:R-HSA-5654413|Reactome:R-HSA-2029451|Reactome:R-HSA-5654663|Reactome:R-HSA-442273|Reactome:R-HSA-442291|Reactome:R-HSA-9665404|Reactome:R-HSA-9672163|Reactome:R-HSA-9634418|Reactome:R-HSA-8877813|Reactome:R-HSA-9665707|Reactome:R-HSA-1168636|Reactome:R-HSA-751029|Reactome:R-HSA-9670436|Reactome:R-HSA-392195|Reactome:R-HSA-399995|Reactome:R-HSA-428535|Reactome:R-HSA-9029158|Reactome:R-HSA-114544|Reactome:R-HSA-380073|Reactome:R-HSA-350769|Reactome:R-HSA-5654426|Reactome:R-HSA-9703441|Reactome:R-HSA-5623508|Reactome:R-HSA-8851877|Reactome:R-HSA-9032798|Reactome:R-HSA-203977|Reactome:R-HSA-442732|Reactome:R-HSA-1306972|Reactome:R-HSA-9665700|Reactome:R-HSA-389350|Reactome:R-HSA-392870 GO:0017112|GO:0005089|GO:0030676|GO:0017034|GO:0005088|GO:0008321|GO:0016220|GO:0019839|GO:0016219|GO:0005086|GO:0008433|GO:0017132|GO:0005087|GO:0005090 molecular_function owl:Class GO:0010072 biolink:NamedThing primary shoot apical meristem specification The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers. tmpzr1t_l9r_go_relaxed.owl embryo shoot apical meristem specification biological_process owl:Class GO:0009320 biolink:NamedThing phosphoribosylaminoimidazole carboxylase complex A protein complex that possesses phosphoribosylaminoimidazole carboxylase activity. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'phosphoribosylaminoimidazole carboxylase activity ; GO:0004638'. cellular_component owl:Class GO:0072198 biolink:NamedThing mesenchymal cell proliferation involved in ureter development The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population of the ureter, that contributes to ureter development. tmpzr1t_l9r_go_relaxed.owl ureteral mesenchymal cell proliferation|ureter mesenchymal cell proliferation mah 2010-03-01T03:24:41Z biological_process owl:Class GO:0005814 biolink:NamedThing centriole A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl daughter centriole|mother centriole NIF_Subcellular:sao95019936|Wikipedia:Centriole In most eukaryotic cells, 'ciliary basal body' (GO:0036064) and 'centriole' (GO:0005814) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain different proteins, specific to each component. cellular_component owl:Class GO:0032608 biolink:NamedThing interferon-beta production The appearance of interferon-beta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interferon-beta biosynthetic process|IFN-beta production|IFNB production|interferon-beta secretion Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0035546|GO:0045350 biological_process owl:Class GO:0038157 biolink:NamedThing granulocyte-macrophage colony-stimulating factor signaling pathway A series of molecular signals initiated by the binding of the cytokine granulocyte macrophage colony-stimulating factor (GM-CSF) to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. GM-CSF binds to a heterodimer receptor (CSF2R) consisting of an alpha ligand-binding subunit, and a common beta subunit that is shared with other cytokine receptors. tmpzr1t_l9r_go_relaxed.owl granulocyte-macrophage colony-stimulating factor signalling pathway|GM-CSF signaling pathway|GM-CSF receptor signaling pathway|CSF2 signaling pathway|granulocyte-macrophage colony-stimulating factor receptor signaling pathway bf 2012-05-14T01:22:15Z biological_process owl:Class GO:0038194 biolink:NamedThing thyroid-stimulating hormone signaling pathway The series of molecular signals generated as a consequence of thyroid-stimulating hormone (thyrotropin) binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl TSH signaling pathway|thyrotropin signaling pathway bf 2013-10-28T09:03:48Z biological_process owl:Class GO:0005007 biolink:NamedThing fibroblast growth factor-activated receptor activity Combining with a fibroblast growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl FGF receptor activity|FGFR|FGF-activated receptor activity|fibroblast growth factor receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand FGF. For receptors that bind other growth factors, consider annotating to terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:2000789 biolink:NamedThing positive regulation of venous endothelial cell fate commitment Any process that activates or increases the frequency, rate or extent of venous endothelial cell fate commitment. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T01:26:19Z biological_process owl:Class GO:0003300 biolink:NamedThing cardiac muscle hypertrophy The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T10:33:56Z biological_process owl:Class GO:0002282 biolink:NamedThing microglial cell activation involved in immune response The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl microglial cell activation during immune response biological_process owl:Class GO:0015134 biolink:NamedThing hexuronate transmembrane transporter activity Enables the transfer of hexuronates from one side of a membrane to the other. A hexuronate is any monocarboxylic acid derived from a hexose by oxidation of C-6. tmpzr1t_l9r_go_relaxed.owl hexuronide transmembrane transporter activity GO:0015163 molecular_function owl:Class GO:0015736 biolink:NamedThing hexuronate transmembrane transport The process in which hexuronate is transported across a lipid bilayer, from one side of a membrane to the other. A hexuronate is any monocarboxylic acid derived from a hexose by oxidation of C-6. tmpzr1t_l9r_go_relaxed.owl hexuronate transport biological_process owl:Class GO:1990745 biolink:NamedThing EARP complex A quatrefoil tethering complex required for endocytic recycling. tmpzr1t_l9r_go_relaxed.owl sp 2015-05-15T10:23:25Z cellular_component owl:Class GO:0035146 biolink:NamedThing tube fusion The joining of specific branches of a tubular system to form a continuous network. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000754 biolink:NamedThing adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion In organisms that undergo conjugation with cellular fusion, the process resulting in desensitization following exposure to pheromone stimulus that act to down-regulate further stimulation or block initial conjugation responses. An example of this is the adaptation to pheromone during conjugation with cellular fusion in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl desensitization to pheromone during conjugation with cellular fusion|adaptation to pheromone during conjugation with cellular fusion|adaptation of signalling pathway by response to pheromone involved in conjugation with cellular fusion GO:0030453|GO:0007331 biological_process owl:Class GO:0014835 biolink:NamedThing myoblast differentiation involved in skeletal muscle regeneration The process in which a relatively unspecialized satellite cell acquires specialized features of a myoblast. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006409 biolink:NamedThing tRNA export from nucleus The directed movement of tRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl tRNA transport from nucleus to cytoplasm|tRNA export out of nucleus|tRNA export from cell nucleus|tRNA-nucleus export biological_process owl:Class GO:0099539 biolink:NamedThing neuropeptide secretion from presynapse The secretion of neuropeptides contained within a dense core vesicle by fusion of the granule with the presynaptic membrane, stimulated by a rise in cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl neuropeptide secretion from presynapse via dense core granule exocytosis biological_process owl:Class GO:0061535 biolink:NamedThing glutamate secretion, neurotransmission The controlled release of glutamate by a cell, in which the glutamate acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T16:14:47Z biological_process owl:Class GO:2000346 biolink:NamedThing negative regulation of hepatocyte proliferation Any process that stops, prevents or reduces the frequency, rate or extent of hepatocyte proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-03T10:27:20Z biological_process owl:Class GO:0007066 biolink:NamedThing female meiosis sister chromatid cohesion The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a female. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904124 biolink:NamedThing microglial cell migration The orderly movement of a microglial cell from one site to another. tmpzr1t_l9r_go_relaxed.owl nc 2015-04-10T16:04:49Z biological_process owl:Class GO:0140222 biolink:NamedThing pathogen-containing vacuole lumen The enclosed volume within the sealed membrane of a pathogen-containing vacuole. tmpzr1t_l9r_go_relaxed.owl pathogen inclusion lumen|lumen of a pathogen-containing vacuole|pathogen-containing compartment lumen|pathogen-containing vacuolar lumen https://github.com/geneontology/go-ontology/issues/15580 pg 2018-04-20T06:24:02Z cellular_component owl:Class GO:0044474 biolink:NamedThing envenomation resulting in negative regulation of voltage-gated calcium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction of the activity of a voltage-gated calcium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:25:04Z biological_process owl:Class GO:1901348 biolink:NamedThing positive regulation of secondary cell wall biogenesis Any process that activates or increases the frequency, rate or extent of secondary cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of plant-type secondary cell wall biogenesis|positive regulation of cellulose and pectin-containing secondary cell wall biogenesis|positive regulation of secondary cell wall biosynthetic process|positive regulation of secondary cell wall synthesis|upregulation of cellulose and pectin-containing secondary cell wall biogenesis|positive regulation of secondary cell wall anabolism|activation of secondary cell wall biosynthetic process|up-regulation of secondary cell wall formation|up regulation of cellulose and pectin-containing secondary cell wall biogenesis|activation of secondary cell wall formation|upregulation of secondary cell wall biosynthetic process|upregulation of secondary cell wall biogenesis|up-regulation of plant-type secondary cell wall biogenesis|up regulation of secondary cell wall anabolism|up regulation of plant-type secondary cell wall biogenesis|up regulation of secondary cell wall formation|activation of secondary cell wall synthesis|up regulation of secondary cell wall biogenesis|up-regulation of secondary cell wall biosynthetic process|activation of secondary cell wall anabolism|up-regulation of secondary cell wall biogenesis|upregulation of plant-type secondary cell wall biogenesis|up regulation of secondary cell wall biosynthetic process|upregulation of secondary cell wall synthesis|upregulation of secondary cell wall anabolism|up-regulation of secondary cell wall synthesis|upregulation of secondary cell wall formation|up-regulation of secondary cell wall anabolism|up regulation of secondary cell wall synthesis|activation of secondary cell wall biogenesis|positive regulation of secondary cell wall formation|activation of cellulose and pectin-containing secondary cell wall biogenesis|up-regulation of cellulose and pectin-containing secondary cell wall biogenesis|activation of plant-type secondary cell wall biogenesis tb 2012-09-07T17:59:14Z biological_process owl:Class GO:0022897 biolink:NamedThing proton-dependent peptide secondary active transmembrane transporter activity Enables the transfer of a peptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement. tmpzr1t_l9r_go_relaxed.owl hydrogen/oligopeptide symporter molecular_function owl:Class GO:0000814 biolink:NamedThing ESCRT II complex An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes. tmpzr1t_l9r_go_relaxed.owl endosomal sorting complex required for transport cellular_component owl:Class GO:0038200 biolink:NamedThing ethylene receptor histidine kinase activity Combining with ethylene and transmitting the signal within the cell to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-histidine = ADP + a protein-L-histidine phosphate. tmpzr1t_l9r_go_relaxed.owl bf 2013-12-05T16:25:15Z molecular_function owl:Class GO:0060434 biolink:NamedThing bronchus morphogenesis The process in which the bronchus is generated and organized. The bronchus is the portion of the airway that connects to the lungs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021985 biolink:NamedThing neurohypophysis development The progression of the neurohypophysis over time from its initial formation until its mature state. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation. tmpzr1t_l9r_go_relaxed.owl neurophysis development|posterior pituitary development|posterior pituitary gland development biological_process owl:Class GO:1905685 biolink:NamedThing negative regulation of plasma membrane repair Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane repair. tmpzr1t_l9r_go_relaxed.owl down regulation of plasma membrane repair|downregulation of plasma membrane repair|inhibition of plasma membrane repair|down-regulation of plasma membrane repair bhm 2016-11-14T10:30:38Z biological_process owl:Class GO:0001778 biolink:NamedThing plasma membrane repair The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038121 biolink:NamedThing C-C motif chemokine 21 receptor activity Combining with the C-C motif chemokine 21 (CCL21) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl CCL21 receptor activity bf 2012-03-22T01:28:06Z molecular_function owl:Class GO:0035758 biolink:NamedThing chemokine (C-C motif) ligand 21 binding Binding to chemokine (C-C motif) ligand 21. tmpzr1t_l9r_go_relaxed.owl CCL21 binding bf 2011-03-25T02:03:53Z molecular_function owl:Class GO:0046209 biolink:NamedThing nitric oxide metabolic process The chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. tmpzr1t_l9r_go_relaxed.owl nitric oxide metabolism biological_process owl:Class GO:0070657 biolink:NamedThing neuromast regeneration The regrowth of a neuromast following its loss or destruction. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T04:11:44Z biological_process owl:Class GO:1990596 biolink:NamedThing histone H3-K4 deacetylation The modification of histone H3 by the removal of an acetyl group from lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl al 2014-12-23T19:37:15Z biological_process owl:Class GO:0090361 biolink:NamedThing regulation of platelet-derived growth factor production Any process that modulates the rate, frequency, or extent of the appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T10:32:27Z biological_process owl:Class GO:0044475 biolink:NamedThing envenomation resulting in negative regulation of high voltage-gated calcium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction of the activity of a high voltage-gated calcium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:28:11Z biological_process owl:Class GO:0002525 biolink:NamedThing acute inflammatory response to non-antigenic stimulus An acute inflammatory response to non-antigenic stimuli such as heat or physical trauma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015120 biolink:NamedThing phosphoglycerate transmembrane transporter activity Enables the transfer of phosphoglycerates from one side of a membrane to the other. Phosphoglycerates are important intermediates in glycolysis and 3-phosphoglycerate is a precursor in serine biosynthesis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015713 biolink:NamedThing phosphoglycerate transmembrane transport The process in which phosphoglycerate is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl phosphoglycerate transport biological_process owl:Class GO:0048939 biolink:NamedThing anterior lateral line nerve glial cell development The process aimed at the progression of a glial cell in the anterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140660 biolink:NamedThing cytoskeletal motor activator activity Binds to and increases the activity of a motor protein. tmpzr1t_l9r_go_relaxed.owl motor activity activator activity https://github.com/geneontology/go-ontology/issues/21756|https://github.com/geneontology/go-ontology/issues/21627 pg 2021-06-16T11:18:55Z molecular_function owl:Class GO:0007446 biolink:NamedThing imaginal disc growth The increase in mass of imaginal discs by cell proliferation prior to metamorphosis. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.) during metamorphosis from larval to adult form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140676 biolink:NamedThing oscillatory cAMP signaling Fluctuation in the extracellular cAMP levels due to the alternate activation of adenylate cyclase, which produces cAMP, and phosphodiesterase, which degrades it. Occurs in Dictyostelium during early sorocarp development. Oscillation in signaling result is directional chemotaxis of cells towards the center of the aggregate. tmpzr1t_l9r_go_relaxed.owl cAMP relay https://github.com/geneontology/go-ontology/issues/21369 pg 2021-06-29T14:14:39Z biological_process owl:Class GO:0140582 biolink:NamedThing adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway A series of molecular signals initiated by cAMP binding to its receptor on the surface of the target cell, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl extracellular cAMP signaling pathway https://github.com/geneontology/go-ontology/issues/20487 pg 2021-01-18T19:30:30Z biological_process owl:Class GO:0098698 biolink:NamedThing postsynaptic specialization assembly The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-04-04T17:22:01Z biological_process owl:Class GO:0071918 biolink:NamedThing urea transmembrane transport The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl urea membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-09-24T10:41:36Z biological_process owl:Class GO:0003212 biolink:NamedThing cardiac left atrium morphogenesis The process in which the left cardiac atrium is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:48:16Z biological_process owl:Class GO:0005745 biolink:NamedThing m-AAA complex Protease complex of the mitochondrial inner membrane that is involved in mitochondrial protein turnover and in processing of proteins imported into mitochondria. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098842 biolink:NamedThing postsynaptic early endosome An early endosome of the postsynapse. It acts as the major sorting station on the endocytic pathway, targeting neurotransmitter receptors for degregation or recycling. tmpzr1t_l9r_go_relaxed.owl Commonly used markers for postsynaptic early endosomes include RAB5A and EEA1. cellular_component owl:Class GO:0090137 biolink:NamedThing epithelial cell-cell adhesion involved in epithelium migration The attachment of an epithelial cell to another epithelial cell via adhesion molecules that contributes to epithelium migration. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T01:58:19Z biological_process owl:Class GO:0090132 biolink:NamedThing epithelium migration The process in which the population of cells that make up an epithelium undergo directed movement. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T03:19:34Z biological_process owl:Class GO:0015640 biolink:NamedThing peptidoglycan peptide transmembrane transporter activity Enables the transfer of peptidoglycan peptides from one side of a membrane to the other. Peptidoglycan peptides are the oligopeptides found in peptidoglycan networks which cross-link the polysaccharide chains. tmpzr1t_l9r_go_relaxed.owl murein peptide transporter activity|muropeptide transporter activity molecular_function owl:Class GO:0071637 biolink:NamedThing regulation of monocyte chemotactic protein-1 production Any process that modulates the frequency, rate, or extent of production of monocyte chemotactic protein-1. tmpzr1t_l9r_go_relaxed.owl regulation of CCL2 production|regulation of MCP-1 production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0003268 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in regulation of secondary heart field cardioblast proliferation The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the modulation of the frequency, rate or extent of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in regulation of secondary heart field cardioblast cell proliferation|fibroblast growth factor receptor signaling pathway involved in regulation of second heart field cardioblast cell proliferation|fibroblast growth factor receptor signaling pathway involved in regulation of secondary heart field cardioblast cell proliferation dph 2009-10-15T02:43:03Z biological_process owl:Class GO:0044490 biolink:NamedThing positive regulation of voltage-gated sodium channel activity in other organism Any process that activates or increases the frequency, rate or extent of the activity of a voltage-gated sodium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T12:21:26Z biological_process owl:Class GO:0045121 biolink:NamedThing membrane raft Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions. tmpzr1t_l9r_go_relaxed.owl lipid raft|glycolipid-enriched membrane domain|GEM domain Wikipedia:Lipid_raft cellular_component owl:Class GO:0046975 biolink:NamedThing histone methyltransferase activity (H3-K36 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 36) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 36). This reaction is the addition of a methyl group onto lysine at position 36 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone lysine N-methyltransferase activity (H3-K36 specific)|histone methylase activity (H3-K36 specific) molecular_function owl:Class GO:0021577 biolink:NamedThing hindbrain structural organization The process that contributes to the act of creating the structural organization of the hindbrain. This process pertains to the physical shaping of a rudimentary structure. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions. tmpzr1t_l9r_go_relaxed.owl hindbrain structural organisation biological_process owl:Class GO:0048853 biolink:NamedThing forebrain morphogenesis The process in which the anatomical structures of the forebrain are generated and organized. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions). tmpzr1t_l9r_go_relaxed.owl prosencephalon morphogenesis biological_process owl:Class GO:0048854 biolink:NamedThing brain morphogenesis The process in which the anatomical structures of the brain are generated and organized. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035658 biolink:NamedThing Mon1-Ccz1 complex A protein complex that functions as a guanine nucleotide exchange factor (GEF) and converts Rab-GDP to Rab-GTP. In S. cerevisiae, this complex consists of at least Mon1 and Ccz1, and serves as a GEF for the Rab Ypt7p. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-28T11:31:20Z cellular_component owl:Class GO:0001184 biolink:NamedThing promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase I at a promoter for the nuclear large ribosomal RNA (rRNA) transcript, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors. tmpzr1t_l9r_go_relaxed.owl krc 2011-08-15T04:03:52Z biological_process owl:Class GO:0036238 biolink:NamedThing gallate dioxygenase activity Catalysis of the reaction: gallate + O2 = (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:GALLATE-DIOXYGENASE-RXN|EC:1.13.11.57|RHEA:28927|KEGG_REACTION:R09565 bf 2012-05-22T01:54:09Z molecular_function owl:Class GO:0035739 biolink:NamedThing CD4-positive, alpha-beta T cell proliferation The expansion of a CD4-positive, alpha-beta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T02:12:48Z biological_process owl:Class GO:1900249 biolink:NamedThing positive regulation of cytoplasmic translational elongation Any process that activates or increases the frequency, rate or extent of cytoplasmic translational elongation. tmpzr1t_l9r_go_relaxed.owl activation of cytoplasmic translational elongation|up-regulation of cytoplasmic translational elongation|upregulation of cytoplasmic translational elongation|up regulation of cytoplasmic translational elongation vw 2012-04-03T05:07:24Z biological_process owl:Class GO:0021775 biolink:NamedThing smoothened signaling pathway involved in ventral spinal cord interneuron specification The series of molecular signals initiated by binding of a ligand to the transmembrane receptor smoothened in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate. tmpzr1t_l9r_go_relaxed.owl smoothened signalling pathway involved in ventral spinal cord interneuron specification|hh signaling pathway involved in ventral spinal cord interneuron specification|hedgehog signaling pathway involved in ventral spinal cord interneuron specification biological_process owl:Class GO:0070183 biolink:NamedThing mitochondrial tryptophanyl-tRNA aminoacylation The process of coupling tryptophan to tryptophanyl-tRNA in a mitochondrion, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061006 biolink:NamedThing regulation of cell proliferation involved in kidney morphogenesis Any process that modulates the frequency, rate or extent of cell proliferation that contributes to the shaping of the kidney. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-21T11:25:23Z biological_process owl:Class GO:0034735 biolink:NamedThing transcription factor TFIIIC2 complex A transcription factor complex that forms part of the TFIIIC complex, observed in human; composed of five subunits (GTF3C1/hTFIIIC220/TFIIICalpha, GTF3C2/hTFIIIC110/TFIIICbeta, GTF3C3/hTFIIIC102/TFIIICgamma, GTF3C4/hTFIIIC90/TFIIICdelta and GTF3C5/hTFIIIC63/TFIIICepsilon in human) that together recognize the type 2 RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902690 biolink:NamedThing positive regulation of NAD metabolic process Any process that activates or increases the frequency, rate or extent of NAD metabolic process. tmpzr1t_l9r_go_relaxed.owl upregulation of oxidized nicotinamide adenine dinucleotide metabolic process|up regulation of NAD metabolic process|activation of NAD (oxidized) metabolism|activation of NAD (oxidized) metabolic process|up-regulation of NAD (oxidized) metabolic process|upregulation of oxidized NAD metabolism|up regulation of oxidized NAD metabolic process|activation of oxidized nicotinamide adenine dinucleotide metabolic process|up-regulation of NAD (oxidized) metabolism|upregulation of nicotinamide adenine dinucleotide metabolic process|up regulation of oxidized NAD metabolism|activation of oxidized NAD metabolic process|up regulation of NAD (oxidized) metabolic process|upregulation of oxidized NAD metabolic process|up-regulation of oxidized NAD metabolism|positive regulation of NAD (oxidized) metabolic process|up-regulation of NAD phosphorylation and dephosphorylation|up-regulation of NAD metabolism|positive regulation of NAD (oxidized) metabolism|up regulation of NAD (oxidized) metabolism|activation of oxidized nicotinamide adenine dinucleotide metabolism|upregulation of oxidized nicotinamide adenine dinucleotide metabolism|up regulation of NAD metabolism|positive regulation of NAD phosphorylation and dephosphorylation|positive regulation of oxidized nicotinamide adenine dinucleotide metabolism|activation of oxidized NAD metabolism|activation of NAD metabolic process|up-regulation of oxidized NAD metabolic process|positive regulation of oxidized NAD metabolism|up regulation of oxidized nicotinamide adenine dinucleotide metabolism|activation of nicotinamide adenine dinucleotide metabolism|upregulation of NAD metabolic process|up-regulation of nicotinamide adenine dinucleotide metabolic process|positive regulation of NAD metabolism|up-regulation of oxidized nicotinamide adenine dinucleotide metabolic process|upregulation of NAD metabolism|up-regulation of nicotinamide adenine dinucleotide metabolism|upregulation of NAD (oxidized) metabolism|activation of NAD phosphorylation and dephosphorylation|up-regulation of NAD metabolic process|activation of nicotinamide adenine dinucleotide metabolic process|up-regulation of oxidized nicotinamide adenine dinucleotide metabolism|positive regulation of oxidized NAD metabolic process|upregulation of NAD (oxidized) metabolic process|positive regulation of nicotinamide adenine dinucleotide metabolism|up regulation of nicotinamide adenine dinucleotide metabolic process|positive regulation of oxidized nicotinamide adenine dinucleotide metabolic process|upregulation of NAD phosphorylation and dephosphorylation|up regulation of NAD phosphorylation and dephosphorylation|upregulation of nicotinamide adenine dinucleotide metabolism|positive regulation of nicotinamide adenine dinucleotide metabolic process|activation of NAD metabolism|up regulation of nicotinamide adenine dinucleotide metabolism|up regulation of oxidized nicotinamide adenine dinucleotide metabolic process di 2014-02-12T18:59:09Z biological_process owl:Class GO:0140416 biolink:NamedThing transcription regulator inhibitor activity A molecular function regulator that inhibits the activity of a transcription regulator via direct binding and/or post-translational modification. tmpzr1t_l9r_go_relaxed.owl DNA-binding transcription factor inhibitor activity https://github.com/geneontology/go-ontology/issues/18596|https://github.com/geneontology/go-ontology/issues/16132 Usage guidance: transcription regulator inhibitors bind to a transcription regulator to prevent it from reaching the chromatin. This activity does not occur at the promoter. For activities that do occur at the promoter, consider GO:0001217 ; DNA-binding transcription repressor activity or GO:0003714 ; transcription corepressor activity. An example of a transcription regulator is TCF23 Q7RTU1 is an example of a protein that regulates transcription factors by heterodimerising or binding to DbTFs and prevent DNA binding and their specific genomic binding site where the dbTF would have activated or repressed transcription. Also an example is NFKBIA P25963 which has a different way of regulating transcription factor activity by sequestering the dbTF (complex) in the cytoplasm. Another example is the HSP90 and HSP23 proteins that sequester steroid receptors away from the DNA. pg 2020-01-21T14:17:39Z molecular_function owl:Class GO:2000496 biolink:NamedThing negative regulation of cell proliferation involved in compound eye morphogenesis Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation involved in compound eye morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-18T02:19:22Z biological_process owl:Class GO:0001836 biolink:NamedThing release of cytochrome c from mitochondria The process that results in the movement of cytochrome c from the mitochondrial intermembrane space into the cytosol, which is part of the apoptotic signaling pathway and leads to caspase activation. tmpzr1t_l9r_go_relaxed.owl The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that are directly involved in this process. An example is Drp1 (DNM1L, UniProt symbol O00429) in PMID:20850011. biological_process owl:Class GO:0072284 biolink:NamedThing metanephric S-shaped body morphogenesis The process in which the metanephric S-shaped body is generated and organized. The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T03:41:36Z biological_process owl:Class GO:0000381 biolink:NamedThing regulation of alternative mRNA splicing, via spliceosome Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. tmpzr1t_l9r_go_relaxed.owl regulation of alternative nuclear mRNA splicing, via spliceosome|splice site selection biological_process owl:Class GO:0080177 biolink:NamedThing plastoglobule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plastoglobule. Plastoglobule is a lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. tmpzr1t_l9r_go_relaxed.owl plastoglobule organisation dhl 2011-04-28T04:13:07Z biological_process owl:Class GO:0035878 biolink:NamedThing nail development The process whose specific outcome is the progression of a nail over time, from its formation to the mature structure. A nail is a horn-like envelope covering the outer end of a finger or toe, and consists of the nail plate, the nail matrix and the nail bed below it, and the grooves surrounding it. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-31T02:30:34Z biological_process owl:Class GO:0060478 biolink:NamedThing acrosomal vesicle exocytosis The calcium ion regulated exocytosis which results in fusion of the acrosomal vesicle with the plasma membrane of the sperm as part of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl acrosomal granule exocytosis|acrosome exocytosis biological_process owl:Class GO:0031924 biolink:NamedThing vitamin B6 transmembrane transporter activity Enables the transfer of any of the vitamin B6 compounds, pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl vitamin B6 transporter activity molecular_function owl:Class GO:0001673 biolink:NamedThing male germ cell nucleus The nucleus of a male germ cell, a reproductive cell in males. tmpzr1t_l9r_go_relaxed.owl male germ-cell nucleus GO:0043081 cellular_component owl:Class GO:0070892 biolink:NamedThing lipoteichoic acid immune receptor activity Combining with lipoteichoic acid and transmitting the signal to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl lipoteichoic acid receptor activity mah 2009-09-01T02:59:24Z molecular_function owl:Class GO:0070891 biolink:NamedThing lipoteichoic acid binding Binding to lipoteichoic acid. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-01T02:56:36Z molecular_function owl:Class GO:0002391 biolink:NamedThing platelet activating factor production involved in inflammatory response The synthesis or release of platelet activating factor following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl platelet activating factor secretion involved in acute inflammatory response|platelet activating factor secretion|platelet activating factor secretion involved in inflammatory response|platelet activating factor production involved in acute inflammatory response|platelet activating factor production https://github.com/geneontology/go-ontology/issues/20154 GO:0002535|GO:0002392|GO:0002390 biological_process owl:Class GO:0072025 biolink:NamedThing distal convoluted tubule development The process whose specific outcome is the progression of the distal convoluted tubule over time, from its formation to the mature structure. The distal convoluted tubule is the first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa. Among other functions, in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T02:40:45Z biological_process owl:Class GO:0150073 biolink:NamedThing regulation of protein-glutamine gamma-glutamyltransferase activity Any process that modulates the frequency, rate or extent of protein-glutamine gamma-glutamyltransferase activity. tmpzr1t_l9r_go_relaxed.owl bc 2018-07-25T10:03:10Z biological_process owl:Class GO:0030316 biolink:NamedThing osteoclast differentiation The process in which a relatively unspecialized monocyte acquires the specialized features of an osteoclast. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue. tmpzr1t_l9r_go_relaxed.owl osteoclast cell differentiation biological_process owl:Class GO:0021804 biolink:NamedThing negative regulation of cell adhesion in ventricular zone The process that results in the loss of attachments of a cell in the ventricular zone. tmpzr1t_l9r_go_relaxed.owl down regulation of cell adhesion in ventricular zone|down-regulation of cell adhesion in ventricular zone|inhibition of cell adhesion in ventricular zone|downregulation of cell adhesion in ventricular zone biological_process owl:Class GO:0045178 biolink:NamedThing basal part of cell The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904503 biolink:NamedThing negative regulation of lipophagy Any process that stops, prevents or reduces the frequency, rate or extent of lipophagy. tmpzr1t_l9r_go_relaxed.owl down regulation of lipophagy|inhibition of lipophagy|down-regulation of lipophagy|downregulation of lipophagy dph 2015-07-24T11:37:18Z biological_process owl:Class GO:0061602 biolink:NamedThing molybdenum cofactor cytidylyltransferase activity Catalysis of the reaction CTP + molybdenum cofactor = diphosphate + cytidylyl molybdenum cofactor. tmpzr1t_l9r_go_relaxed.owl RHEA:31335|EC:2.7.7.76 dph 2014-02-10T14:46:38Z molecular_function owl:Class GO:0043312 biolink:NamedThing neutrophil degranulation The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil. tmpzr1t_l9r_go_relaxed.owl heterophil degranulation|neutrophil granule exocytosis biological_process owl:Class GO:1902868 biolink:NamedThing positive regulation of retina development in camera-type eye Any process that activates or increases the frequency, rate or extent of retina development in camera-type eye. tmpzr1t_l9r_go_relaxed.owl upregulation of retina development in camera-type eye|positive regulation of retinal development|activation of retina development in camera-type eye|up-regulation of retina development in camera-type eye|up regulation of retina development in camera-style eye|activation of retina development in camera-style eye|positive regulation of retina development in camera-style eye|up-regulation of retina development in camera-style eye|upregulation of retinal development|activation of retinal development|upregulation of retina development in camera-style eye|up regulation of retinal development|up regulation of retina development in camera-type eye|up-regulation of retinal development mr 2014-04-03T15:24:29Z biological_process owl:Class GO:1990202 biolink:NamedThing FMN reductase complex A protein complex capable of FMN reductase activity. Reduces FMN to FMNH2 in a NAD(P)H-dependent manner. In E.coli, consists of a SsuE dimer. tmpzr1t_l9r_go_relaxed.owl flavin oxidoreductase complex, NAD(P)H-dependent|FMN reductase complex, NAD(P)H-dependent|SsuE complex|FMN oxidoreductase complex, NAD(P)H-dependent bhm 2013-10-03T15:07:20Z cellular_component owl:Class GO:0032282 biolink:NamedThing plastid acetyl-CoA carboxylase complex An acetyl-CoA carboxylase complex located in the stroma of a plastid. tmpzr1t_l9r_go_relaxed.owl plastid ACCase complex cellular_component owl:Class GO:0004911 biolink:NamedThing interleukin-2 receptor activity Combining with interleukin-2 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-2R|IL-2 receptor activity molecular_function owl:Class GO:0032454 biolink:NamedThing histone H3-methyl-lysine-9 demethylase activity Catalysis of the removal of a methyl group from a modified lysine residue at position 9 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl H3K49 demethylase activity|histone demethylase activity (H3-K9 specific) https://github.com/geneontology/go-ontology/issues/21089 Reactome:R-HSA-9011985|Reactome:R-HSA-997263|Reactome:R-HSA-9011949 molecular_function owl:Class GO:1900461 biolink:NamedThing positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of pseudohyphal growth by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl dgf 2012-05-01T07:01:40Z biological_process owl:Class GO:0060358 biolink:NamedThing negative regulation of leucine import Any process that decreases the rate, frequency or extent of leucine import. Leucine import is the directed movement of leucine into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090166 biolink:NamedThing Golgi disassembly A cellular process that results in the breakdown of a Golgi apparatus that contributes to Golgi inheritance. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T09:15:11Z biological_process owl:Class GO:0015210 biolink:NamedThing uracil transmembrane transporter activity Enables the transfer of uracil, 2,4-dioxopyrimidine, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl uracil/uridine permease activity molecular_function owl:Class GO:0042874 biolink:NamedThing D-glucuronate transmembrane transport The process in which D-glucuronate, the D-enantiomer of glucuronate, is transported across a lipid bilayer, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl D-glucuronate transport biological_process owl:Class GO:1904436 biolink:NamedThing negative regulation of transferrin receptor binding Any process that stops, prevents or reduces the frequency, rate or extent of transferrin receptor binding. tmpzr1t_l9r_go_relaxed.owl down-regulation of transferrin receptor binding|downregulation of transferrin receptor binding|down regulation of transferrin receptor binding|inhibition of transferrin receptor binding kom 2015-07-06T13:49:07Z biological_process owl:Class GO:0060352 biolink:NamedThing cell adhesion molecule production The appearance of a cell adhesion molecule due to biosynthesis or secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030479 biolink:NamedThing actin cortical patch An endocytic patch that consists of an actin-containing structure found at the plasma membrane in cells; formed of networks of branched actin filaments that lie just beneath the plasma membrane and assemble, move, and disassemble rapidly. An example of this is the actin cortical patch found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl actin patch GO:0005857 cellular_component owl:Class GO:0050873 biolink:NamedThing brown fat cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria. tmpzr1t_l9r_go_relaxed.owl brown adipocyte cell differentiation|brown adipocyte differentiation biological_process owl:Class GO:0007303 biolink:NamedThing cytoplasmic transport, nurse cell to oocyte The directed movement of cytoplasmic constituents synthesized in the nurse cells to the oocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061564 biolink:NamedThing axon development The progression of an axon over time. Covers axonogenesis (de novo generation of an axon) and axon regeneration (regrowth), as well as processes pertaining to the progression of the axon over time (fasciculation and defasciculation). tmpzr1t_l9r_go_relaxed.owl dph 2013-07-18T14:43:01Z biological_process owl:Class GO:0000709 biolink:NamedThing meiotic joint molecule formation The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. These joint molecules contain Holliday junctions on either side of heteroduplex DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014904 biolink:NamedThing myotube cell development The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021764 biolink:NamedThing amygdala development The progression of the amygdala over time from its initial formation until its mature state. The amygdala is an almond-shaped set of neurons in the medial temporal lobe of the brain that play a key role in processing emotions such as fear and pleasure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044671 biolink:NamedThing sorocarp spore cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sorocarp spore cell, a cell of the sorocarp sorus. A sorocarp is the fruiting body characteristic of certain cellular slime moulds (e.g., Dictyosteliida) and consists of both stalk and a sorus (spore mass). tmpzr1t_l9r_go_relaxed.owl jl 2012-08-08T13:10:48Z biological_process owl:Class GO:0018989 biolink:NamedThing apolysis The first process of molting, characterized by the detachment of the old cuticle from the underlying epidermal cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Apolysis biological_process owl:Class GO:0032002 biolink:NamedThing interleukin-28 receptor complex A protein complex that binds interleukin-28 and interleukin-29. It is composed of an alpha and a beta receptor subunit (in human IFNLR1/IL28Ralpha & IL10RB) and either Interleukin-28 (IFNL2 or IFNL3) or Interleukin-29 (IFNL1). tmpzr1t_l9r_go_relaxed.owl IL-28 receptor complex cellular_component owl:Class GO:0007464 biolink:NamedThing R3/R4 cell fate commitment The process in which the R3/R4 photoreceptors commit to their cell fate. R3 and R4 are paired photoreceptors which contribute the outer rhabdomeres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905349 biolink:NamedThing ciliary transition zone assembly The aggregation, arrangement and bonding together of a set of components to form a ciliary transition zone. tmpzr1t_l9r_go_relaxed.owl ciliary transition zone formation|cilium transition zone assembly|cilial transition zone assembly|cilial transition zone formation|cilium transition zone formation pr 2016-08-04T14:49:43Z biological_process owl:Class GO:1903931 biolink:NamedThing positive regulation of pyrimidine-containing compound salvage Any process that activates or increases the frequency, rate or extent of pyrimidine-containing compound salvage. tmpzr1t_l9r_go_relaxed.owl up regulation of pyrimidine-containing compound salvage|up-regulation of pyrimidine salvage|upregulation of pyrimidine-containing compound salvage|upregulation of pyrimidine salvage|activation of pyrimidine-containing compound salvage|activation of pyrimidine salvage|up-regulation of pyrimidine-containing compound salvage|positive regulation of pyrimidine salvage|up regulation of pyrimidine salvage al 2015-02-12T14:09:15Z biological_process owl:Class GO:0048099 biolink:NamedThing anterior/posterior lineage restriction, imaginal disc Formation and/or maintenance of a lineage boundary between anterior and posterior compartments that cells cannot cross, thus separating the populations of cells in each compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060532 biolink:NamedThing bronchus cartilage development The process whose specific outcome is the progression of lung cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate. tmpzr1t_l9r_go_relaxed.owl pulmonary cartilage development dph 2009-04-10T08:12:06Z biological_process owl:Class GO:0097166 biolink:NamedThing lens epithelial cell proliferation The multiplication or reproduction of lens epithelial cells, resulting in the expansion of a cell population. Lens epithelial cells make up the lens epithelium, which is located in the anterior portion of the lens between the lens capsule and the lens fibers and is a simple cuboidal epithelium. The epithelial cells of the lens regulate most of the homeostatic functions of the lens such as osmolarity and liquid volume. The lens epithelial cells also serve as the progenitors for new lens fibers. The lens epithelium constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-29T01:27:50Z biological_process owl:Class GO:0019432 biolink:NamedThing triglyceride biosynthetic process The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol. tmpzr1t_l9r_go_relaxed.owl triglyceride formation|triglyceride biosynthesis|triacylglycerol biosynthetic process|triglyceride anabolism|triacylglycerol biosynthesis|triglyceride synthesis MetaCyc:TRIGLSYN-PWY biological_process owl:Class GO:0061705 biolink:NamedThing sucrose catabolic process to fructose-6-phosphate through glucose and fructose The chemical reactions and pathways resulting in the breakdown of sucrose, to yield fructose-6-phosphate through both glucose and fructose intermediates. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-621 dph 2015-06-11T13:32:05Z biological_process owl:Class GO:0002317 biolink:NamedThing plasma cell differentiation The process in which a B cell acquires the specialized features of a plasma cell. A plasma cell is a lymphocyte which develops from a B cell and produces high amounts of antibody. tmpzr1t_l9r_go_relaxed.owl plasma cell development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0008131 biolink:NamedThing primary amine oxidase activity Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl amine oxidase activity|primary-amine:oxygen oxidoreductase (deaminating) activity|amine oxidase (copper-containing) activity MetaCyc:RXN-9597|Reactome:R-HSA-5696183|KEGG_REACTION:R01853|Reactome:R-HSA-141200|EC:1.4.3.21|Reactome:R-HSA-5603108|Reactome:R-HSA-5696146|Reactome:R-HSA-141186|Reactome:R-HSA-379395|Reactome:R-HSA-374909|Reactome:R-HSA-379382|Reactome:R-HSA-141202 GO:0008122|GO:0004041 molecular_function owl:Class GO:0008494 biolink:NamedThing translation activator activity Any of a group of soluble proteins functioning in the activation of ribosome-mediated translation of mRNA into a polypeptide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070565 biolink:NamedThing telomere-telomerase complex A complex of DNA and protein located at the end of a linear chromosome that enables replication of the telomeric repeat sequences at the end of a linear chromosome. tmpzr1t_l9r_go_relaxed.owl Note that this term can be used in place of the obsolete cellular component term 'telomere ; GO:0005696'. Use with caution because this term refers to a specific protein complex and not a region of the chromosome. mah 2009-04-14T03:07:50Z cellular_component owl:Class GO:0060966 biolink:NamedThing regulation of gene silencing by RNA Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-05T03:17:02Z biological_process owl:Class GO:0045105 biolink:NamedThing intermediate filament polymerization or depolymerization Assembly or disassembly of intermediate filaments by the addition or removal of component parts from a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903949 biolink:NamedThing positive regulation of atrial cardiac muscle cell action potential Any process that activates or increases the frequency, rate or extent of atrial cardiac muscle cell action potential. tmpzr1t_l9r_go_relaxed.owl activation of atrial cardiac muscle cell action potential|up-regulation of atrial cardiac muscle cell action potential|upregulation of atrial cardiac muscle cell action potential|up regulation of atrial cardiac muscle cell action potential nc 2015-02-20T14:36:42Z biological_process owl:Class GO:0060537 biolink:NamedThing muscle tissue development The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-10T08:05:37Z biological_process owl:Class GO:0097342 biolink:NamedThing ripoptosome A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more. tmpzr1t_l9r_go_relaxed.owl TNFR1 complex II|Tnfr1-CII|necrosome It has been shown that receptor-mediated necroptotic signaling pathway requires assembly of a ripoptosome protein complex consisting of caspase-8, caspase-10, Fas-associated death domain protein (FADD), casp8 and FADD-like apoptosis regulator (CFLAR) as well as the two receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (PMID:21737330). Optionally, depending on the receptor activated, this complex may contain TLR3 adaptor protein TRIF (PMID:21737330). pr 2012-06-18T12:55:34Z cellular_component owl:Class GO:0005008 biolink:NamedThing hepatocyte growth factor-activated receptor activity Combining with hepatocyte growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl hepatocyte growth factor receptor activity|HGF receptor activity|HGF-activated receptor activity Note that this term represents an activity and not a gene product, and should only be used when the receptor binds the ligand HGF. For receptors that bind other growth factors, consider annotating to other terms under 'transmembrane signaling receptor activity ; GO:0004888. molecular_function owl:Class GO:0036458 biolink:NamedThing hepatocyte growth factor binding Binding to a hepatocyte growth factor. tmpzr1t_l9r_go_relaxed.owl HGF binding bf 2013-12-09T14:07:20Z molecular_function owl:Class GO:1990475 biolink:NamedThing synaptic vesicle, recycling pool A synaptic vesicle belonging to the pool that repopulate vacancies within the readily releasable pool (RRP) of synaptic vesicles, and require more significant stimuli than the RRP in order to release neurotransmitter; about 10-15% of the total number of synaptic vesicles at a resting terminal bouton are in this state. tmpzr1t_l9r_go_relaxed.owl recycling pool of synaptic vesicles pr 2014-09-02T09:08:22Z cellular_component owl:Class GO:0005931 biolink:NamedThing axonemal nexin link A protein complex found in the axoneme of eukaryotic cilia and flagella. It forms interconnections between the microtubule outer doublets that surround the inner central pair of microtubules. tmpzr1t_l9r_go_relaxed.owl nexin complex|axonemal interdoublet link cellular_component owl:Class GO:0021683 biolink:NamedThing cerebellar granular layer morphogenesis The process in which the anatomical structure of the cerebellar granular layer is generated and organized. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060915 biolink:NamedThing mesenchymal cell differentiation involved in lung development The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell of the lung. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-18T11:45:33Z biological_process owl:Class GO:0045009 biolink:NamedThing chitosome An intracellular membrane-bounded particle found in fungi and containing chitin synthase; it synthesizes chitin microfibrils. Chitin synthase activity exists in chitosomes and they are proposed to act as a reservoir for regulated transport of chitin synthase enzymes to the division septum. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048759 biolink:NamedThing xylem vessel member cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a vessel member cell. A vessel member cell is one of the components of a vessel in the xylem. It is a dead cell with the wall between adjacent members being variously perforated and the walls that persist variously thickened. tmpzr1t_l9r_go_relaxed.owl vessel member cell differentiation|vessel element cell differentiation biological_process owl:Class GO:0071442 biolink:NamedThing positive regulation of histone H3-K14 acetylation Any process that activates or increases the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl up regulation of histone H3-K14 acetylation|upregulation of histone H3-K14 acetylation|stimulation of histone H3-K14 acetylation|up-regulation of histone H3-K14 acetylation|activation of histone H3-K14 acetylation|positive regulation of histone H3 acetylation at K14|positive regulation of histone H3K14 acetylation mah 2009-12-16T03:29:49Z biological_process owl:Class GO:0043384 biolink:NamedThing pre-T cell receptor complex A receptor complex found on immature T cells consisting of a T cell receptor beta chain and the pre-TCR-alpha chain, along with additional signaling components including CD3 family members and additional signaling proteins. tmpzr1t_l9r_go_relaxed.owl pre-T-cell receptor complex|pre-TCR complex|pre-T-lymphocyte receptor complex|pre-T lymphocyte receptor complex cellular_component owl:Class GO:0070898 biolink:NamedThing RNA polymerase III preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription PIC formation|RNA polymerase III transcriptional preinitiation complex formation|RNA polymerase III type 3 promoter transcriptional preinitiation complex assembly|RNA polymerase III transcriptional preinitiation complex assembly|RNA polymerase III type 1 promoter transcriptional preinitiation complex assembly|RNA polymerase III transcription PIC biosynthesis|RNA polymerase III hybrid type promoter transcriptional preinitiation complex assembly|RNA polymerase III type 2 promoter transcriptional preinitiation complex assembly mah 2010-08-19T04:16:04Z GO:0001021|GO:0001043|GO:0001020|GO:0000999 biological_process owl:Class GO:2000806 biolink:NamedThing positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled Any process that activates or increases the frequency, rate or extent of termination of RNA polymerase II transcription, poly(A)-coupled. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription termination from Pol II promoter, poly(A) coupled|positive regulation of transcription termination from Pol II promoter, RNA polymerase(A) coupled|positive regulation of termination of RNA polymerase II transcription, polyadenylation-coupled pr 2011-07-04T08:41:39Z biological_process owl:Class GO:1901898 biolink:NamedThing negative regulation of relaxation of cardiac muscle Any process that stops, prevents or reduces the frequency, rate or extent of relaxation of cardiac muscle. tmpzr1t_l9r_go_relaxed.owl downregulation of relaxation of cardiac muscle|inhibition of relaxation of cardiac muscle|down-regulation of relaxation of cardiac muscle|down regulation of relaxation of cardiac muscle rl 2013-02-06T21:27:02Z biological_process owl:Class GO:0060360 biolink:NamedThing negative regulation of leucine import in response to ammonium ion Any process that decreases the rate, frequency or extent of leucine import as a result of an ammonium ion stimulus. Leucine import is the directed movement of leucine into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl negative regulation of leucine uptake in response to ammonium ion biological_process owl:Class GO:0070998 biolink:NamedThing sensory perception of gravity The series of events required for an organism to receive a gravitational stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-03T03:25:12Z biological_process owl:Class GO:0004918 biolink:NamedThing interleukin-8 receptor activity Combining with interleukin-8 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-8 receptor activity|IL-8R molecular_function owl:Class GO:0021757 biolink:NamedThing caudate nucleus development The progression of the caudate nucleus over time from its initial formation until its mature state. The caudate nucleus is the C-shaped structures of the striatum containing input neurons involved with control of voluntary movement in the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021756 biolink:NamedThing striatum development The progression of the striatum over time from its initial formation until its mature state. The striatum is a region of the forebrain consisting of the caudate nucleus, putamen and fundus striati. tmpzr1t_l9r_go_relaxed.owl neostriatum development|striate nucleus development biological_process owl:Class GO:1990411 biolink:NamedThing hercynylcysteine sulfoxide lyase activity (ergothioneine-forming) Catalysis of the reaction: hercynylcysteine sulfoxide + 2H+ = ergothioneine + pyruvate + ammonium. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14428|RHEA:42688 mah 2014-07-02T15:45:43Z molecular_function owl:Class GO:0048400 biolink:NamedThing positive regulation of intermediate mesodermal cell fate specification Any process that activates or increases the frequency, rate or extent of intermediate mesoderm cell fate specification. tmpzr1t_l9r_go_relaxed.owl up-regulation of intermediate mesodermal cell fate specification|up regulation of intermediate mesodermal cell fate specification|stimulation of intermediate mesodermal cell fate specification|activation of intermediate mesodermal cell fate specification|upregulation of intermediate mesodermal cell fate specification biological_process owl:Class GO:0090091 biolink:NamedThing positive regulation of extracellular matrix disassembly Any process that increases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl tb 2009-11-04T10:03:25Z biological_process owl:Class GO:2000040 biolink:NamedThing regulation of planar cell polarity pathway involved in axis elongation Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in axis elongation. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-18T02:47:49Z biological_process owl:Class GO:0031162 biolink:NamedThing sulfur incorporation into metallo-sulfur cluster The incorporation of exogenous sulfur into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl sulphur incorporation into metallo-sulphur cluster biological_process owl:Class GO:0072426 biolink:NamedThing response to G2 DNA damage checkpoint signaling A process that occurs in response to signals generated as a result of G2/M transition DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl G2/M transition DNA damage checkpoint effector process|response to signal involved in G2/M transition DNA damage checkpoint mah 2010-12-08T04:26:35Z biological_process owl:Class GO:0098689 biolink:NamedThing latency-replication decision The process by which a virus switches on its replication cycle in an infected cell. The process is typically controlled by a genetic swtich controlled by environmental factors such as cell type, cell shape, the availability of nutrients, superinfection or exposure of infected cells to UV or various chemical stimuli. tmpzr1t_l9r_go_relaxed.owl reactivation of latent virus|proviral switch|lytic switch|prophage induction|Latency-replication switch|proviral induction VZ:3964 dos 2017-02-28T11:24:26Z biological_process owl:Class GO:1900295 biolink:NamedThing negative regulation of heptasaccharide transport Any process that stops, prevents or reduces the frequency, rate or extent of heptasaccharide transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of heptasaccharide transport|inhibition of heptasaccharide transport|down regulation of heptasaccharide transport|downregulation of heptasaccharide transport tt 2012-04-05T07:40:49Z biological_process owl:Class GO:0097541 biolink:NamedThing axonemal basal plate Part of the axoneme consisting of a highly electron-dense region at the distal end of the ciliary transition zone within the axonemal lumen at which the axonemal central pair of microtubules is connected to the rest of the axonemal structure. tmpzr1t_l9r_go_relaxed.owl axoneme basal plate|basal plate pr 2013-12-12T11:10:39Z cellular_component owl:Class GO:0003291 biolink:NamedThing atrial septum intermedium morphogenesis The process in which anatomical structure of an atrial septum intermedium is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:35:04Z biological_process owl:Class GO:0003286 biolink:NamedThing atrial septum intermedium development The progression of the atrial septum intermedium over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:23:52Z biological_process owl:Class GO:0106172 biolink:NamedThing COPI-coated vesicle lumen The volume enclosed by the membrane of a COPI-coated endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-11T18:04:08Z cellular_component owl:Class GO:2000653 biolink:NamedThing regulation of genetic imprinting Any process that modulates the frequency, rate or extent of genetic imprinting. tmpzr1t_l9r_go_relaxed.owl regulation of DNA imprinting vk 2011-04-30T02:42:19Z biological_process owl:Class GO:0008865 biolink:NamedThing fructokinase activity Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-fructose(D-mannose)kinase activity|D-fructokinase activity|fructokinase (phosphorylating)|ATP:D-fructose 6-phosphotransferase activity MetaCyc:FRUCTOKINASE-RXN|RHEA:16125|EC:2.7.1.4 molecular_function owl:Class GO:1902325 biolink:NamedThing negative regulation of chlorophyll biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of chlorophyll biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of chlorophyll biosynthesis|down-regulation of chlorophyll synthesis|down regulation of chlorophyll synthesis|down-regulation of chlorophyll formation|down regulation of chlorophyll biosynthetic process|negative regulation of chlorophyll formation|downregulation of chlorophyll anabolism|downregulation of chlorophyll formation|downregulation of chlorophyll biosynthetic process|down-regulation of chlorophyll biosynthesis|inhibition of chlorophyll formation|inhibition of chlorophyll biosynthesis|down-regulation of chlorophyll biosynthetic process|negative regulation of chlorophyll anabolism|down regulation of chlorophyll anabolism|inhibition of chlorophyll anabolism|down-regulation of chlorophyll anabolism|negative regulation of chlorophyll synthesis|inhibition of chlorophyll synthesis|negative regulation of chlorophyll biosynthesis|down regulation of chlorophyll formation|downregulation of chlorophyll biosynthesis|inhibition of chlorophyll biosynthetic process|downregulation of chlorophyll synthesis tb 2013-07-24T22:47:29Z biological_process owl:Class GO:0120107 biolink:NamedThing bacterial-type flagellum rotor complex The rotor complex of the bacterial-type flagellum consists of a membrane-anchored ring and the motor switch complex, which participates in the conversion of proton/Na+ energy into the mechanical work of rotation and controls the direction of flagellar rotation. tmpzr1t_l9r_go_relaxed.owl krc 2017-10-17T20:54:45Z cellular_component owl:Class GO:0044476 biolink:NamedThing envenomation resulting in negative regulation of low voltage-gated calcium channel activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant stopping, prevention or reduction of the activity of a low voltage-gated calcium channel in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:28:42Z biological_process owl:Class GO:0035919 biolink:NamedThing negative regulation of low voltage-gated calcium channel activity in other organism Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a low voltage-gated calcium channel in another organism. A low voltage-gated channel is a channel whose open state is dependent on low voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl downregulation of low voltage-gated calcium channel activity in other organism|inhibition of low voltage-gated calcium channel activity in other organism|down-regulation of low voltage-gated calcium channel activity in other organism|negative regulation of low voltage-dependent calcium channel activity in other organism|negative regulation of low voltage gated calcium channel activity in other organism bf 2011-07-01T11:56:21Z biological_process owl:Class GO:0015701 biolink:NamedThing bicarbonate transport The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036130 biolink:NamedThing prostaglandin H2 endoperoxidase reductase activity Catalysis of the reaction: prostaglandin H2 + NADPH + H+ -> prostaglandin F2alpha + NADP+. This reaction is the reduction of prostaglandin H2 ((5Z,13E)-(15S)-9alpha,11alpha-Epidioxy-15-hydroxyprosta-5,13-dienoate) to prostaglandin F2alpha ((5Z,13E)-(15S)-9alpha,11alpha,15-Trihydroxyprosta-5,13-dienoate). tmpzr1t_l9r_go_relaxed.owl PGH2 9,11-endoperoxidase|PGH2 9-,11-endoperoxide reductase RHEA:45312|Reactome:R-HSA-2161549|KEGG_REACTION:R02264 bf 2012-03-05T09:25:03Z molecular_function owl:Class GO:0002109 biolink:NamedThing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 5S rRNA in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035764 biolink:NamedThing dorsal motor nucleus of vagus nerve formation The process that gives rise to the dorsal motor nucleus of the vagus nerve. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-29T02:48:26Z biological_process owl:Class GO:0098025 biolink:NamedThing virus tail, baseplate Multiprotein component at the distal (head) end of the virus tail to which fibers of tailed viruses may be attached. tmpzr1t_l9r_go_relaxed.owl bacteriophage baseplate|tail structure|tail tip Tail fibers are often attached to the baseplate of Caudovirales (tailed bacteriophages with dsDNA genomes). Sometimes referred to as the tail tip or tip structure in Siphoviridae. bm 2012-07-19T14:16:51Z cellular_component owl:Class GO:1905344 biolink:NamedThing prostaglandin catabolic process The chemical reactions and pathways resulting in the breakdown of prostaglandin. tmpzr1t_l9r_go_relaxed.owl prostaglandin degradation|prostaglandin breakdown|prostaglandin catabolism rl 2016-07-31T08:20:02Z biological_process owl:Class GO:1902488 biolink:NamedThing cholangiocyte apoptotic process Any apoptotic process in a cholangiocyte. tmpzr1t_l9r_go_relaxed.owl epithelial cell of bile duct apoptosis|epithelial cell of bile duct apoptotic process|cholangiocyte apoptosis cls 2013-11-12T15:30:08Z biological_process owl:Class GO:0030142 biolink:NamedThing COPI-coated Golgi to ER transport vesicle A vesicle that mediates transport from the Golgi to the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl Golgi-ER transport vesicle|retrograde transport vesicle|Golgi to endoplasmic reticulum transport vesicle|Golgi to ER constitutive secretory pathway transport vesicle|Golgi-endoplasmic reticulum transport vesicle cellular_component owl:Class GO:0044499 biolink:NamedThing envenomation resulting in positive regulation of blood pressure in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant increase of the force with which blood travels through the circulatory system of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T02:39:06Z biological_process owl:Class GO:0044497 biolink:NamedThing positive regulation of blood pressure in other organism A process by which one organism increases the force with which blood travels through the circulatory system of another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T02:17:21Z biological_process owl:Class GO:0043490 biolink:NamedThing malate-aspartate shuttle The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise malate in the cytosol; this compound is then transported into the mitochondria where it is converted to oxaloacetate using NADH, the oxaloacetate reacts with gluamate to form aspartate, and the aspartate then returns to the cytosol to complete the cycle. tmpzr1t_l9r_go_relaxed.owl malate aspartate shuttle|malate:aspartate shuttle|malate/aspartate shuttle Wikipedia:Malate-aspartate_shuttle biological_process owl:Class GO:0052776 biolink:NamedThing diacetylchitobiose catabolic process to glucosamine and acetate The pathway resulting in the breakdown of diacetylchitobiose into simpler products, including glucosamine and glucosamine. The catabolism proceeds by the deacetylation of diacetylchitobiose, producing acetate and GlcN-GlcNAc; the latter is cleaved to produce glucosamine (GlcN) and N-acetylglucosamine (GlcNAc). The N-acetylglucosamine (GlcNAc) is then deacetylated to produce glucosamine (GlcN) and acetate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052773 biolink:NamedThing diacetylchitobiose deacetylase activity Catalysis of the reaction: N,N'-diacetylchitobiose (GlcNac2) + H2O = acetate + 2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose (GlcN-GlcNAc). tmpzr1t_l9r_go_relaxed.owl N,N'-diacetylchitobiose deacetylase (nonreducing end) MetaCyc:RXN-12543 In this reaction N,N'-diacetylchitobiose is deacetylated at the non-reducing residue to produce 2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose (GlcN-GlcNAc). This is in contrast to EC:3.5.1.105 in which N,N'-diacetylchitobiose is deacetylated at the reducing residue to produce 4-O-(N-acetyl-beta-D-glucosaminyl)-D-glucosamine (GlcNAc-GlcN). For the latter reaction, see GO:0036311. ai 2011-10-03T12:01:05Z molecular_function owl:Class GO:0004839 biolink:NamedThing ubiquitin activating enzyme activity Catalysis of the reaction: E1 + ubiquitin + ATP--> E1-ubiquitin + AMP + PPi, where the E1-ubiquitin linkage is a thioester bond between the C-terminal glycine of Ub and a sulfhydryl side group of an E1 cysteine residue. This is the first step in a cascade of reactions in which ubiquitin is ultimately added to a protein substrate. tmpzr1t_l9r_go_relaxed.owl E1 ubiquitin-activating enzyme Reactome:R-HSA-8852134|Reactome:R-HSA-8865050|Reactome:R-HSA-8852133|EC:6.2.1.45|Reactome:R-HSA-8865098|Reactome:R-HSA-8852132|Reactome:R-HSA-8865090 The ubiquitin activating enzyme catalyzes a ligation reaction. molecular_function owl:Class GO:0070001 biolink:NamedThing aspartic-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048727 biolink:NamedThing posterior cibarial plate development The process whose specific outcome is the progression of the posterior cibarial plate over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106005 biolink:NamedThing RNA 5'-cap (guanine-N7)-methylation The process whereby a guanine in 5-cap is methylated at the N7 position of guanine. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-07T19:19:57Z biological_process owl:Class GO:0007567 biolink:NamedThing parturition The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs. tmpzr1t_l9r_go_relaxed.owl egg laying|giving birth biological_process owl:Class GO:0035099 biolink:NamedThing hemocyte migration The directed movement of a hemocyte within the embryo. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. In Drosophila, embryonic hemocytes originate from the head mesoderm as a cluster of cells. The cluster splits into two and one group of cells crosses the amnioserosa. Both populations then spread toward the middle of the embryo and then disperse evenly throughout the embryo. tmpzr1t_l9r_go_relaxed.owl arthropod blood cell migration|hemocyte cell migration biological_process owl:Class GO:0048148 biolink:NamedThing behavioral response to cocaine Any process that results in a change in the behavior of an organism as a result of a cocaine stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural response to cocaine biological_process owl:Class GO:0120264 biolink:NamedThing regulation of chromosome attachment to the nuclear envelope Any process that modulates the frequency, rate, extent or location of chromosome attachment to the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20020 krc 2020-09-29T20:26:49Z biological_process owl:Class GO:1903370 biolink:NamedThing positive regulation of foraging behavior Any process that activates or increases the frequency, rate or extent of foraging behavior. tmpzr1t_l9r_go_relaxed.owl up-regulation of foraging behavior|activation of foraging behavior|upregulation of foraging behavior|up regulation of foraging behavior mr 2014-08-22T03:03:20Z biological_process owl:Class GO:1903361 biolink:NamedThing protein localization to basolateral plasma membrane Any process in which a protein is transported to, or maintained in, basolateral regions of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation to basolateral plasma membrane|protein localisation in basolateral plasma membrane|protein localization in basolateral plasma membrane|basolateral protein localization dph 2012-10-19T13:58:04Z GO:0061467 biological_process owl:Class GO:0106106 biolink:NamedThing cold-induced thermogenesis The process by which heat is generated by increasing metabolism in response to cold ambient temperatures in order to maintain a stable core body temperature. tmpzr1t_l9r_go_relaxed.owl CIT hjd 2018-03-21T20:30:52Z biological_process owl:Class GO:0021615 biolink:NamedThing glossopharyngeal nerve morphogenesis The process in which the anatomical structure of the glossopharyngeal nerve is generated and organized. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion. tmpzr1t_l9r_go_relaxed.owl CN IX morphogenesis biological_process owl:Class GO:0014062 biolink:NamedThing regulation of serotonin secretion Any process that modulates the frequency, rate or extent of the regulated release of serotonin. tmpzr1t_l9r_go_relaxed.owl regulation of serotonin release biological_process owl:Class GO:1904862 biolink:NamedThing inhibitory synapse assembly The aggregation, arrangement and bonding together of a set of components to form an inhibitory synapse. tmpzr1t_l9r_go_relaxed.owl inhibitory synapse formation bf 2015-12-17T10:31:34Z biological_process owl:Class GO:0005950 biolink:NamedThing anthranilate synthase complex A heterotetrameric enzyme complex made up of two components I and two components II. Catalyzes the formation of anthranilate, pyruvate and L-glutamate from chorismate and L-glutamine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002432 biolink:NamedThing granuloma formation The formation of nodular inflammatory lesions, usually small or granular, firm, persistent, well-structured, and containing compactly grouped T lymphocytes and modified phagocytes such as epithelioid cells, giant cells, and other macrophages. Granuloma formation represents a chronic inflammatory response initiated by various infectious and noninfectious agents. The center of a granuloma consists of fused macrophages, which can become necrotic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901426 biolink:NamedThing response to furfural Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a furfural stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T18:45:43Z biological_process owl:Class GO:0035911 biolink:NamedThing descending aorta morphogenesis The process in which the anatomical structures of the descending aorta are generated and organized. The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries. In a two-pass circulatory system blood passes twice through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:19:24Z biological_process owl:Class GO:0051504 biolink:NamedThing diterpene phytoalexin precursor biosynthetic process pathway A branched pathway that produces the precursors to four structurally distinct types of polycyclic diterpenes. The pathway starts with the cyclization of geranylgeranyl diphosphate into ent-copalyl diphosphate and syn-copalyl diphosphate. The catalytic conversion by diterpene cyclases of these two compounds produces the four diterpene hydrocarbons which are precursors to the four structurally distinct classes of diterpene phytoalexins. tmpzr1t_l9r_go_relaxed.owl diterpene phytoalexin precursor formation pathway|diterpene phytoalexin precursor synthesis pathway|diterpene phytoalexin precursor anabolism pathway MetaCyc:PWY-2981 biological_process owl:Class GO:0035724 biolink:NamedThing CD24 biosynthetic process The chemical reactions and pathways resulting in the formation of CD24, a CD marker and cell adhesion molecule that occurs on many B-lineage cells and mature granulocytes, and is involved in B cell activation and differentiation as well as T cell co-stimulation. tmpzr1t_l9r_go_relaxed.owl CD24 anabolism|CD24 formation|CD24 synthesis|CD24 biosynthesis bf 2011-03-07T11:32:54Z biological_process owl:Class GO:1903862 biolink:NamedThing positive regulation of oxidative phosphorylation Any process that activates or increases the frequency, rate or extent of oxidative phosphorylation. tmpzr1t_l9r_go_relaxed.owl up regulation of respiratory-chain phosphorylation|upregulation of oxidative phosphorylation|up-regulation of respiratory-chain phosphorylation|upregulation of respiratory-chain phosphorylation|up regulation of oxidative phosphorylation|activation of respiratory-chain phosphorylation|activation of oxidative phosphorylation|up-regulation of oxidative phosphorylation|positive regulation of respiratory-chain phosphorylation sl 2015-02-02T23:40:22Z biological_process owl:Class GO:0046666 biolink:NamedThing retinal cell programmed cell death Programmed cell death that occurs in the developing retina. tmpzr1t_l9r_go_relaxed.owl programmed cell death, retinal cells|retina programmed cell death|programmed cell death, retina cells|retinal programmed cell death|retina cell programmed cell death biological_process owl:Class GO:0097027 biolink:NamedThing ubiquitin-protein transferase activator activity Binds to and increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-31T05:19:23Z molecular_function owl:Class GO:0019959 biolink:NamedThing interleukin-8 binding Binding to interleukin-8. tmpzr1t_l9r_go_relaxed.owl IL-8 binding molecular_function owl:Class GO:2001271 biolink:NamedThing negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis. tmpzr1t_l9r_go_relaxed.owl negative regulation of effector caspase activity pr 2011-12-13T07:59:42Z biological_process owl:Class GO:0021673 biolink:NamedThing rhombomere 7 formation The process that gives rise to rhombomere 7. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090250 biolink:NamedThing cell-cell adhesion involved in establishment of planar polarity The attachment of one cell to another cell via adhesion molecules that contributes to the establishment of planar cell polarity. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:28:03Z biological_process owl:Class GO:0004909 biolink:NamedThing interleukin-1, type I, activating receptor activity Combining with interleukin-1 to initiate a change in cell activity via signaling pathways and mediated by adaptor proteins. tmpzr1t_l9r_go_relaxed.owl interleukin-1 activating receptor activity|IL-1 type I, activating receptor|interleukin-1 type I receptor activity|IL-1 type I, activating binding|interleukin-1, type I, activating binding GO:0019967 molecular_function owl:Class GO:0001614 biolink:NamedThing purinergic nucleotide receptor activity Combining with a purine nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl purinoceptor|P2 receptor|purinoreceptor|purinergic receptor activity bf 2010-10-22T10:57:12Z GO:0035586 molecular_function owl:Class GO:0061860 biolink:NamedThing DNA clamp unloader activity Facilitating the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their removal from the DNA duplex, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-03T11:49:46Z molecular_function owl:Class GO:0042949 biolink:NamedThing arbutin transport The directed movement of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021718 biolink:NamedThing superior olivary nucleus development The process whose specific outcome is the progression of the superior olivary nucleus over time, from its formation to the mature structure. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. tmpzr1t_l9r_go_relaxed.owl superior olive development biological_process owl:Class GO:0035800 biolink:NamedThing deubiquitinase activator activity Binds to and increases the activity of deubiquitinase, an enzyme that catalyzes the hydrolysis of various forms of polymeric ubiquitin sequences. tmpzr1t_l9r_go_relaxed.owl 2011-04-18T10:20:15Z molecular_function owl:Class GO:0044748 biolink:NamedThing 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule that contributes to forming distinct miRNA isoforms from a mature miRNA. tmpzr1t_l9r_go_relaxed.owl exonucleolytic trimming to generate 3' end of miRNA jl 2012-11-20T13:48:29Z molecular_function owl:Class GO:0045266 biolink:NamedThing plasma membrane proton-transporting ATP synthase, stator stalk One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the plasma membrane-associated F0 proteins; is thought to prevent futile rotation of the catalytic core. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl proton-transporting ATP synthase, stator stalk|hydrogen-transporting ATP synthase, stator stalk cellular_component owl:Class GO:0090598 biolink:NamedThing male anatomical structure morphogenesis The processes by which anatomical structures that are only present in the male organism are generated and organized. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-22T13:29:45Z biological_process owl:Class GO:0072093 biolink:NamedThing metanephric renal vesicle formation The developmental process pertaining to the initial formation of the metanephros. tmpzr1t_l9r_go_relaxed.owl metanephros formation mah 2010-02-10T01:17:11Z biological_process owl:Class GO:0021771 biolink:NamedThing lateral geniculate nucleus development The progression of the lateral geniculate nucleus over time from its initial formation until its mature state. The lateral geniculate nucleus is the primary processor of visual information received from the retina. tmpzr1t_l9r_go_relaxed.owl LGN development biological_process owl:Class GO:0048899 biolink:NamedThing anterior lateral line development The process whose specific outcome is the progression of the anterior lateral line over time, from its formation to the mature structure. The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear. tmpzr1t_l9r_go_relaxed.owl anterior LL development biological_process owl:Class GO:0016358 biolink:NamedThing dendrite development The process whose specific outcome is the progression of the dendrite over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009945 biolink:NamedThing radial axis specification The establishment, maintenance and elaboration of an axis that initiates at a point and radiates outward from the point. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010892 biolink:NamedThing positive regulation of mitochondrial translation in response to stress Any process that activates or increases the frequency, rate or extent of mitochondrial translation as a result of a stimulus indicating the organism is under stress. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061382 biolink:NamedThing Malpighian tubule tip cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule tip cell. A Malpighian tubule tip cell is a mitogenic signaling cell that controls the proliferation of its neighboring cells. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-23T09:52:44Z biological_process owl:Class GO:0061219 biolink:NamedThing mesonephric mesenchyme development The biological process whose specific outcome is the progression of a mesonephric mesenchyme from an initial condition to its mature state. This process begins with the formation of mesonephric mesenchyme and ends with the mature structure. Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-17T03:45:44Z biological_process owl:Class GO:0106037 biolink:NamedThing apicomedial cortex The region that lies just beneath the plasma membrane in the middle of the apical edge of a cell. tmpzr1t_l9r_go_relaxed.owl medioapical cortex hjd 2017-07-12T16:59:52Z cellular_component owl:Class GO:0000390 biolink:NamedThing spliceosomal complex disassembly Disassembly of a spliceosomal complex with the ATP-dependent release of the product RNAs, one of which is composed of the joined exons. In cis splicing, the other product is the excised sequence, often a single intron, in a lariat structure. tmpzr1t_l9r_go_relaxed.owl U2-type spliceosome disassembly|spliceosome complex disassembly|spliceosome disassembly|U12-type spliceosome disassembly GO:0000392|GO:0000391 biological_process owl:Class GO:0099042 biolink:NamedThing nucleation of clathrin-coated pit The first step in clathrin-dependent endocytosis: invagination of the plasma membrane to form a pit. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014802 biolink:NamedThing terminal cisterna The portion of sarcoplasmic reticulum devoted to calcium ion storage and calcium ion release. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Terminal_cisterna cellular_component owl:Class GO:0019037 biolink:NamedThing viral assembly intermediate Specific locations and structures in the virus infected cell involved in assembling new virions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990144 biolink:NamedThing intrinsic apoptotic signaling pathway in response to hypoxia A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to hypoxia (lowered oxygen tension). Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. The pathway ends when the execution phase of apoptosis is triggered. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-23T10:18:10Z biological_process owl:Class GO:0090740 biolink:NamedThing integral component of pigment granule membrane The component of the pigment granule membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl tb 2017-05-16T17:48:35Z cellular_component owl:Class GO:0005797 biolink:NamedThing Golgi medial cisterna The middle Golgi cisterna (or cisternae). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061844 biolink:NamedThing antimicrobial humoral immune response mediated by antimicrobial peptide An immune response against microbes mediated by anti-microbial peptides in body fluid. tmpzr1t_l9r_go_relaxed.owl antimicrobial peptide-mediated antimicrobial humoral response|peptide-mediated antimicrobial humoral response biological_process owl:Class GO:0003432 biolink:NamedThing cell growth involved in growth plate cartilage chondrocyte morphogenesis The growth of a growth plate cartilage chondrocyte, where growth contributes to the shaping of the chondrocyte over time. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T12:37:48Z biological_process owl:Class GO:0140235 biolink:NamedThing RNA polyadenylation at postsynapse A polyadenylation event (the enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule) that takes place at a postsynapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-13T12:03:28Z biological_process owl:Class GO:0097734 biolink:NamedThing extracellular exosome biogenesis The assembly and secretion of an extracellular exosome, a membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. tmpzr1t_l9r_go_relaxed.owl exosome biogenesis|exosome production|ILV assembly|intraluminal vesicle assembly|exosome assembly or secretion pr 2016-10-03T14:35:25Z biological_process owl:Class GO:0002075 biolink:NamedThing somitomeric trunk muscle development The process whose specific outcome is the progression of the somitomeric trunk muscle over time, from its formation to the mature structure. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004124 biolink:NamedThing cysteine synthase activity Catalysis of the reaction: O3-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate. tmpzr1t_l9r_go_relaxed.owl O-acetyl-L-serine sulfohydrolase activity|O-acetyl-L-serine sulfhydrylase activity|O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase activity|O3-acetyl-L-serine acetate-lyase (adding hydrogen-sulfide)|O-acetylserine (thiol)-lyase activity|3-O-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase activity|O-acetylserine sulfhydrylase activity|OAS sulfhydrylase activity|O-acetylserine (thiol)-lyase A activity|acetylserine sulfhydrylase activity|O(3)-acetyl-L-serine acetate-lyase (adding hydrogen-sulfide) activity|cysteine synthetase activity MetaCyc:ACSERLY-RXN|EC:2.5.1.47|RHEA:14829 Note that this function was formerly 4.2.99.8. molecular_function owl:Class GO:0038102 biolink:NamedThing activin receptor antagonist activity Interacting with an activin receptor complex to reduce the action of another ligand, the agonist. A receptor antagonist does not initiate signaling upon binding to a receptor, but instead blocks an agonist from binding to the receptor. tmpzr1t_l9r_go_relaxed.owl This term refers to inhibition of a member of the activin receptor family; activin receptors bind to multiple ligands including activin and nodal. bf 2012-02-17T11:28:59Z molecular_function owl:Class GO:0090289 biolink:NamedThing regulation of osteoclast proliferation Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. tmpzr1t_l9r_go_relaxed.owl tb 2010-02-18T03:11:03Z biological_process owl:Class GO:0036018 biolink:NamedThing cellular response to erythropoietin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an erythropoietin stimulus. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-12T10:12:18Z biological_process owl:Class GO:2000989 biolink:NamedThing negative regulation of hemicellulose catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of hemicellulose catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of hemicellulose catabolism tt 2011-08-08T03:08:20Z biological_process owl:Class GO:0031902 biolink:NamedThing late endosome membrane The lipid bilayer surrounding a late endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001787 biolink:NamedThing natural killer cell proliferation The expansion of a natural killer cell population by cell division. tmpzr1t_l9r_go_relaxed.owl NK cell proliferation biological_process owl:Class GO:0035987 biolink:NamedThing endodermal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo. tmpzr1t_l9r_go_relaxed.owl endoderm cell differentiation bf 2011-08-25T04:50:36Z biological_process owl:Class GO:0035694 biolink:NamedThing mitochondrial protein catabolic process The chemical reactions and pathways resulting in the breakdown of a mitochondrial protein. This process is necessary to maintain the healthy state of mitochondria and is thought to occur via the induction of an intramitochondrial lysosome-like organelle that acts to eliminate the damaged oxidised mitochondrial proteins without destroying the mitochondrial structure. tmpzr1t_l9r_go_relaxed.owl catabolism of mitochondrial protein|degradation of damaged mitochondrial protein bf 2011-02-28T11:06:40Z biological_process owl:Class GO:2000535 biolink:NamedThing regulation of entry of bacterium into host cell Any process that modulates the frequency, rate or extent of entry of bacterium into host cell. tmpzr1t_l9r_go_relaxed.owl regulation of bacterial entry into host cell|regulation of invasion of bacteria into host cell ebc 2011-03-28T09:52:16Z biological_process owl:Class GO:0010950 biolink:NamedThing positive regulation of endopeptidase activity Any process that increases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. tmpzr1t_l9r_go_relaxed.owl tb 2009-04-27T11:45:39Z biological_process owl:Class GO:0004367 biolink:NamedThing glycerol-3-phosphate dehydrogenase [NAD+] activity Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl L-glycerol phosphate dehydrogenase activity|NAD-alpha-glycerophosphate dehydrogenase activity|alpha-glycerol phosphate dehydrogenase (NAD) activity|NAD-dependent glycerol-3-phosphate dehydrogenase activity|L-glycerophosphate dehydrogenase activity|NAD-L-glycerol-3-phosphate dehydrogenase activity|NAD-dependent glycerol phosphate dehydrogenase activity|glycerol 1-phosphate dehydrogenase activity|L-alpha-glycerophosphate dehydrogenase activity|L-alpha-glycerol phosphate dehydrogenase activity|glycerol-3-phosphate dehydrogenase (NAD) activity|glycerophosphate dehydrogenase (NAD) activity|hydroglycerophosphate dehydrogenase activity|NADH-dihydroxyacetone phosphate reductase activity|NAD-linked glycerol 3-phosphate dehydrogenase activity|alpha-glycerophosphate dehydrogenase (NAD) activity|glycerol phosphate dehydrogenase (NAD) activity RHEA:11092|Reactome:R-HSA-75889|KEGG_REACTION:R00842|MetaCyc:1.1.1.8-RXN|EC:1.1.1.8 molecular_function owl:Class GO:0043973 biolink:NamedThing histone H3-K4 acetylation The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K4 acetylation|histone H3 acetylation at K4 biological_process owl:Class GO:0060439 biolink:NamedThing trachea morphogenesis The process in which a trachea is generated and organized. The trachea is the portion of the airway that attaches to the bronchi as it branches. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032169 biolink:NamedThing prospore septin ring A tight ring-shaped structure that forms in the division plane at the site of cytokinesis in a prospore; composed of septins as well as septin-associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033616 biolink:NamedThing plasma membrane proton-transporting ATP synthase complex assembly The aggregation, arrangement and bonding together of a proton-transporting ATP synthase in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120075 biolink:NamedThing positive regulation of endocardial cushion cell differentiation Any process that activates or increases the frequency, rate or extent of endocardial cushion cell differentiation. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-26T23:36:59Z biological_process owl:Class GO:0036063 biolink:NamedThing acroblast A cone-shaped structure in the head of a spermatozoon, which is formed by the coalescence of Golgi fragments following the completion of meiosis. The acroblast is situated adjacent to the acrosomal vesicle. tmpzr1t_l9r_go_relaxed.owl spermatid acroblast See also the fly_anatomy.ontology term 'acroblast ; FBbt:00004947'. bf 2011-12-14T02:29:05Z cellular_component owl:Class GO:0038132 biolink:NamedThing neuregulin binding Binding to a neuregulin, a member of the EGF family of growth factors. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-30T10:59:56Z molecular_function owl:Class GO:0002617 biolink:NamedThing negative regulation of macrophage antigen processing and presentation Any process that stops, prevents, or reduces the frequency, rate, or extent of macrophage antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl inhibition of macrophage antigen processing and presentation|downregulation of macrophage antigen processing and presentation|down regulation of macrophage antigen processing and presentation|down-regulation of macrophage antigen processing and presentation biological_process owl:Class GO:0031422 biolink:NamedThing RecQ family helicase-topoisomerase III complex A complex containing a RecQ family helicase and a topoisomerase III homologue (a member of the topoisomerase type IA subfamily); may also include one or more additional proteins; conserved from E. coli to human. tmpzr1t_l9r_go_relaxed.owl RecQ helicase-Topo III complex|Sgs1-Top3 complex cellular_component owl:Class GO:0004170 biolink:NamedThing dUTP diphosphatase activity Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl deoxyuridine-triphosphatase activity|dUTPase activity|dUTP nucleotidohydrolase activity|desoxyuridine 5'-triphosphate nucleotidohydrolase activity|desoxyuridine 5'-triphosphatase activity|dUTP pyrophosphatase activity RHEA:10248|KEGG_REACTION:R02100|MetaCyc:DUTP-PYROP-RXN|EC:3.6.1.23|Reactome:R-HSA-73666 molecular_function owl:Class GO:0042551 biolink:NamedThing neuron maturation A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032902 biolink:NamedThing nerve growth factor production The appearance of nerve growth factor (NGF) due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl NGF production|beta-nerve growth factor production biological_process owl:Class GO:1902440 biolink:NamedThing protein localization to mitotic spindle pole body A process in which a protein is transported to, or maintained in, a location within a mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl protein localisation in mitotic spindle pole body|protein localisation to mitotic spindle pole body|protein localization in mitotic spindle pole body|establishment of protein localization to mitotic spindle pole body mah 2013-10-10T14:44:55Z GO:1990975 biological_process owl:Class GO:0048483 biolink:NamedThing autonomic nervous system development The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007403 biolink:NamedThing glial cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl GO:0043361 biological_process owl:Class GO:0043117 biolink:NamedThing positive regulation of vascular permeability Any process that increases the extent to which blood vessels can be pervaded by fluid. tmpzr1t_l9r_go_relaxed.owl up regulation of vascular permeability|up-regulation of vascular permeability|activation of vascular permeability|stimulation of vascular permeability|upregulation of vascular permeability biological_process owl:Class GO:0001829 biolink:NamedThing trophectodermal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a trophectoderm cell. tmpzr1t_l9r_go_relaxed.owl trophectoderm cell differentiation See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19'. biological_process owl:Class GO:0044814 biolink:NamedThing glycolytic fermentation via PFL pathway The glycolytic fermentation beginning with the anaerobic conversion of glucose to pyruvate by the glycolytic pathway, followed by pyruvate:formate lyase (PFL) activity. This pathway is found in facultative anaerobes such as E. coli. tmpzr1t_l9r_go_relaxed.owl jl 2013-09-18T16:56:02Z biological_process owl:Class GO:0002248 biolink:NamedThing connective tissue replacement involved in inflammatory response wound healing The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared that contribute to an inflammatory response. tmpzr1t_l9r_go_relaxed.owl fibrosis during inflammatory response|connective tissue replacement during inflammatory response biological_process owl:Class GO:0003043 biolink:NamedThing vasoconstriction of artery involved in aortic body chemoreceptor response to lowering of systemic arterial blood pressure A process that is triggered by aortic body-vasomotor excitation and results in a decrease in the diameter of an artery during the chemoreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl vasoconstriction of artery during aortic body chemoreceptor response to lowering of systemic arterial blood pressure biological_process owl:Class GO:0072066 biolink:NamedThing prebend segment development The process whose specific outcome is the progression of the prebend segment over time, from its formation to the mature structure. The prebend segment is a part of the descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:14:02Z biological_process owl:Class GO:0034150 biolink:NamedThing toll-like receptor 6 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 6. tmpzr1t_l9r_go_relaxed.owl TLR6 signaling pathway|toll-like receptor 6 signalling pathway biological_process owl:Class GO:0007195 biolink:NamedThing adenylate cyclase-inhibiting dopamine receptor signaling pathway The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl inhibition of adenylate cyclase activity by dopamine receptor signalling pathway|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|dopamine receptor, adenylate cyclase inhibiting pathway|dopamine receptor, adenylyl cyclase inhibiting pathway biological_process owl:Class GO:1990098 biolink:NamedThing core primosome complex A protein-DNA complex containing at least one DNA helicase and one primase. Can also contain associated proteins. The helicase component continues to unwind the double-stranded DNA (dsDNA) and the primase component synthesizes a RNA primer during initiation or restart of replication. tmpzr1t_l9r_go_relaxed.owl core primosome The core primosome refers to a helicase-primase complex, and should not be confused with the more general GO term 'primosome complex ; GO:1990077'. bhm 2013-05-14T10:30:02Z cellular_component owl:Class GO:0048323 biolink:NamedThing axial mesodermal cell fate determination The process in which a cell becomes capable of differentiating autonomously into an axial mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl axial mesoderm cell fate determination biological_process owl:Class GO:0098694 biolink:NamedThing regulation of synaptic vesicle budding from presynaptic endocytic zone membrane Any process that modulates the frequency, rate or extent of synaptic vesicle budding from presynaptic endocytic zone membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-04-04T17:03:29Z biological_process owl:Class GO:0015349 biolink:NamedThing thyroid hormone transmembrane transporter activity Enables the transfer of thyroid hormones from one side of a membrane to the other. Thyroid hormone are any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-9631987|Reactome:R-HSA-879575 molecular_function owl:Class GO:0070327 biolink:NamedThing thyroid hormone transport The directed movement of thyroid hormone into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl triiodothyronine transport|thyroxine transport biological_process owl:Class GO:0000093 biolink:NamedThing mitotic telophase The cell cycle phase which follows anaphase during M phase of mitosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0033215 biolink:NamedThing reductive iron assimilation A process in which iron is solubilized by reduction from Fe3+ to Fe2+ via a cell surface reductase and subsequent transport of the iron across the membrane by iron uptake proteins. tmpzr1t_l9r_go_relaxed.owl iron assimilation by reduction and transport biological_process owl:Class GO:2001266 biolink:NamedThing Roundabout signaling pathway involved in axon guidance Any Roundabout signaling pathway that is involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl ROBO/SLIT signaling pathway involved in axon chemotaxis|Roundabout signaling pathway involved in axon growth cone guidance|Roundabout signalling pathway involved in axon pathfinding|Roundabout signalling pathway involved in axon guidance|ROBO signaling pathway involved in axon guidance|ROBO/SLIT signaling pathway involved in axon guidance|ROBO signaling pathway involved in axon pathfinding|ROBO/SLIT signaling pathway involved in axon pathfinding|Roundabout signaling pathway involved in axon chemotaxis|ROBO signaling pathway involved in axon chemotaxis|Roundabout signalling pathway involved in axon growth cone guidance|ROBO signaling pathway involved in axon growth cone guidance|Roundabout signalling pathway involved in axon chemotaxis|Roundabout signaling pathway involved in axon pathfinding|ROBO/SLIT signaling pathway involved in axon growth cone guidance bf 2011-12-12T03:40:20Z biological_process owl:Class GO:0090651 biolink:NamedThing apical cytoplasm The region of the cytoplasm located at the apical side of the cell. Used in reference to animal polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl tb 2015-07-01T15:46:19Z cellular_component owl:Class GO:0086059 biolink:NamedThing voltage-gated calcium channel activity involved SA node cell action potential Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an SA node cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated calcium channel activity involved in SAN cardiac muscle cell action potential|voltage-gated calcium channel activity involved in sinus node cardiac muscle cell action potential|voltage-gated calcium channel activity involved in sinoatrial node cardiac muscle cell action potential|voltage-gated calcium channel activity involved in SA node cardiac muscle cell action potential dph 2011-11-17T12:39:27Z molecular_function owl:Class GO:0072068 biolink:NamedThing late distal convoluted tubule development The process whose specific outcome is the progression of the late distal convoluted tubule over time, from its formation to the mature structure. The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:15:50Z biological_process owl:Class GO:0042672 biolink:NamedThing retinal cone cell fate specification The process in which a cell becomes capable of differentiating autonomously into a retinal cone cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009863 biolink:NamedThing salicylic acid mediated signaling pathway A series of molecular signals mediated by salicylic acid. tmpzr1t_l9r_go_relaxed.owl salicylic acid mediated signal transduction|salicylic acid mediated signalling pathway|salicylic acid-mediated signaling pathway biological_process owl:Class GO:1902626 biolink:NamedThing assembly of large subunit precursor of preribosome The aggregation, arrangement and bonding together of a set of components to form the large subunit precursor of the preribosome. tmpzr1t_l9r_go_relaxed.owl 66S preribosome formation|preribosome, large subunit precursor formation|66S preribosome assembly tb 2014-01-16T19:38:05Z biological_process owl:Class GO:0061347 biolink:NamedThing planar cell polarity pathway involved in outflow tract morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the outflow tract. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T10:38:56Z biological_process owl:Class GO:0003242 biolink:NamedThing cardiac chamber ballooning The morphogenic growth in which the chambers of the heart expand in size, contributing to their shaping. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:30:30Z biological_process owl:Class GO:0043577 biolink:NamedThing chemotropism The movement of an organism, or part of an organism, in response to an external chemical gradient, usually toward or away from it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chemotropism biological_process owl:Class GO:0021631 biolink:NamedThing optic nerve morphogenesis The process in which the anatomical structure of the optic nerve is generated and organized. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain. tmpzr1t_l9r_go_relaxed.owl CN II morphogenesis biological_process owl:Class GO:0021969 biolink:NamedThing corticospinal neuron axon guidance through the cerebral peduncle The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after exiting the internal capsule through the cerebral peduncle in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through the cerebral peduncle biological_process owl:Class GO:0032488 biolink:NamedThing Cdc42 protein signal transduction A series of molecular signals within the cell that are mediated by the Cdc42 protein switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl Cdc42 signaling|Cdc42 signaling pathway|cdc42 signalling pathway biological_process owl:Class GO:0030504 biolink:NamedThing inorganic diphosphate transmembrane transporter activity Enables the transfer of inorganic diphosphate across a membrane. tmpzr1t_l9r_go_relaxed.owl inorganic pyrophosphate transporter activity Reactome:R-HSA-5226964 molecular_function owl:Class GO:0061151 biolink:NamedThing BMP signaling pathway involved in renal system segmentation A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the segmentation of the renal system. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in renal system segmentation dph 2010-06-02T09:29:43Z biological_process owl:Class GO:0004357 biolink:NamedThing glutamate-cysteine ligase activity Catalysis of the reaction: L-cysteine + L-glutamate + ATP = L-gamma-glutamyl-L-cysteine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyl-L-cysteine synthetase activity|L-glutamate:L-cysteine gamma-ligase (ADP-forming) activity|gamma-glutamylcysteine synthetase activity|gamma-glutamylcysteinyl synthetase activity Reactome:R-HSA-174367|MetaCyc:GLUTCYSLIG-RXN|RHEA:13285|Reactome:R-HSA-5602892|EC:6.3.2.2|KEGG_REACTION:R00894 molecular_function owl:Class GO:0048291 biolink:NamedThing isotype switching to IgG isotypes The switching of activated B cells from IgM biosynthesis to biosynthesis of an IgG isotype, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and one of the IgG constant region gene segments in the immunoglobulin heavy chain locus. tmpzr1t_l9r_go_relaxed.owl isotype switch recombination to IgG isotypes|class switching to IgG isotypes biological_process owl:Class GO:1903750 biolink:NamedThing regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl regulation of intrinsic apoptotic signaling pathway in response to H2O2|regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway|regulation of H2O2-induced intrinsic apoptotic signaling pathway|regulation of hydrogen peroxide-induced apoptosis krc 2014-12-12T23:04:28Z biological_process owl:Class GO:1900287 biolink:NamedThing positive regulation of cellotriose transport Any process that activates or increases the frequency, rate or extent of cellotriose transport. tmpzr1t_l9r_go_relaxed.owl activation of cellotriose transport|upregulation of cellotriose transport|up regulation of cellotriose transport|up-regulation of cellotriose transport tt 2012-04-05T05:57:05Z biological_process owl:Class GO:1990629 biolink:NamedThing phospholamban complex A protein complex found as a homopentamer of the phospholamban (PLN) protein in the sarcoplasmic reticulum (SR) membrane of cardiomyocytes. Cardiac PLN is a main determinant of muscle contraction and relaxation, by regulating intracellular calcium levels. tmpzr1t_l9r_go_relaxed.owl cardiac PLN complex|cardiac PLB complex|cardiac phospholamban complex An example of this is PLN in human (UniProt symbol P26678) in PMID:16043693 (inferred from direct assay). ame 2015-02-05T14:12:36Z cellular_component owl:Class GO:0071657 biolink:NamedThing positive regulation of granulocyte colony-stimulating factor production Any process that activates or increases the frequency, rate, or extent of production of granulocyte colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl positive regulation of pluripoietin production|positive regulation of granulocyte colony stimulating factor production|positive regulation of colony stimulating factor 3 (granulocyte) production|positive regulation of lenograstim production|positive regulation of G-CSF production|positive regulation of CSF3 production|positive regulation of filgrastim production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0072089 biolink:NamedThing stem cell proliferation The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T02:03:36Z biological_process owl:Class GO:0010025 biolink:NamedThing wax biosynthetic process The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. tmpzr1t_l9r_go_relaxed.owl wax anabolism|wax synthesis|wax formation|wax biosynthesis MetaCyc:PWY-282 biological_process owl:Class GO:1990913 biolink:NamedThing sperm head plasma membrane The plasma membrane that is part of the head section of a sperm cell. tmpzr1t_l9r_go_relaxed.owl sl 2015-12-07T23:14:04Z cellular_component owl:Class GO:1903080 biolink:NamedThing regulation of C-C chemokine receptor CCR7 signaling pathway Any process that modulates the frequency, rate or extent of C-C chemokine receptor CCR7 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of CCR7 signaling pathway|regulation of C-C chemokine receptor CCR7 signalling pathway rl 2014-05-29T18:32:49Z biological_process owl:Class GO:0097025 biolink:NamedThing MPP7-DLG1-LIN7 complex A heterotrimeric protein complex formed by the association of MMP7, DLG1 and either LIN7A or LIN7C; regulates the stability and localization of DLG1 to cell junctions. tmpzr1t_l9r_go_relaxed.owl pr 2011-03-30T05:03:33Z cellular_component owl:Class GO:0072116 biolink:NamedThing pronephros formation The developmental process pertaining to the initial formation of the pronephros. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life. tmpzr1t_l9r_go_relaxed.owl pronephric kidney formation mah 2010-02-22T11:16:26Z biological_process owl:Class GO:0021705 biolink:NamedThing locus ceruleus formation The process that gives rise to the locus ceruleus. This process pertains to the initial formation of a structure from unspecified parts. In mice, the locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009537 biolink:NamedThing proplastid The precursor of other plastids. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070102 biolink:NamedThing interleukin-6-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-6 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl IL-6-mediated signaling pathway|interleukin-6-mediated signalling pathway biological_process owl:Class GO:0071354 biolink:NamedThing cellular response to interleukin-6 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-6 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-6 mah 2009-12-11T02:51:14Z biological_process owl:Class GO:0007199 biolink:NamedThing G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, followed by activation of guanylyl cyclase (GC) activity and a subsequent increase in the concentration of cyclic GMP (cGMP). tmpzr1t_l9r_go_relaxed.owl G-protein signalling, coupled to cGMP nucleotide second messenger|G protein signalling, coupled to cGMP nucleotide second messenger|guanylate cyclase-activating G-protein coupled receptor signaling pathway|G-protein signaling, coupled to cGMP nucleotide second messenger|GPCR signaling pathway via activation of guanylate cyclase activity|G protein signaling, coupled to cGMP nucleotide second messenger|GPCR signaling pathway via cGMP second messenger|G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process owl:Class GO:0090629 biolink:NamedThing lagging strand initiation The process in which the synthesis of DNA from a template strand in a net 3' to 5' direction is started. tmpzr1t_l9r_go_relaxed.owl tb 2015-02-11T14:37:13Z biological_process owl:Class GO:1904808 biolink:NamedThing positive regulation of protein oxidation Any process that activates or increases the frequency, rate or extent of protein oxidation. tmpzr1t_l9r_go_relaxed.owl up regulation of protein amino acid oxidation|up regulation of protein oxidation|upregulation of protein oxidation|positive regulation of protein amino acid oxidation|activation of protein oxidation|up-regulation of protein amino acid oxidation|activation of protein amino acid oxidation|upregulation of protein amino acid oxidation|up-regulation of protein oxidation mec 2015-11-10T14:06:15Z biological_process owl:Class GO:0030745 biolink:NamedThing dimethylhistidine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + N-alpha,N-alpha-dimethyl-L-histidine = S-adenosyl-L-homocysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:Nalpha,Nalpha-dimethyl-L-histidine nalpha-methyltransferase activity|histidine-alpha-N-methyltransferase activity|S-adenosyl-L-methionine:alpha-N,alpha-N-dimethyl-L-histidine alpha-N-methyltransferase activity|dimethylhistidine methyltransferase activity RHEA:11104|EC:2.1.1.44|MetaCyc:2.1.1.44-RXN|KEGG_REACTION:R04436 molecular_function owl:Class GO:0001552 biolink:NamedThing ovarian follicle atresia A periodic process in which immature ovarian follicles degenerate and are subsequently re-absorbed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051014 biolink:NamedThing actin filament severing The process in which an actin filament is broken down into smaller filaments. tmpzr1t_l9r_go_relaxed.owl actin filament severing activity|barbed-end actin capping/severing activity|F-actin severing biological_process owl:Class GO:0070937 biolink:NamedThing CRD-mediated mRNA stability complex A protein complex that binds to, and promotes stabilization of, mRNA molecules containing the coding region instability determinant (CRD). In human, it may consist of IGF2BP1, HNRNPU, SYNCRIP/HNRNPQ, YBX1, and DHX9. tmpzr1t_l9r_go_relaxed.owl coding-region determinant of instability-mediated mRNA stability complex|coding-region instability determinant -mediated mRNA stability complex See also the molecular function term 'alkyl hydroperoxide reductase activity ; GO:0008785'. mah 2009-09-22T02:00:22Z cellular_component owl:Class GO:0101027 biolink:NamedThing optical nerve axon regeneration The regrowth of axons of the optical nerve following their loss or damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0085036 biolink:NamedThing extrahaustorial matrix The space between the symbiont plasma membrane and the extrahaustorial membrane of the host. tmpzr1t_l9r_go_relaxed.owl See also: haustorium ; GO:0085035 and extrahaustorial membrane ; GO:0085037. jl 2010-07-27T03:58:20Z cellular_component owl:Class GO:0043655 biolink:NamedThing host extracellular space The space within a host but external to the plasma membrane of host cells, e.g. within host bloodstream. tmpzr1t_l9r_go_relaxed.owl extracellular space of host cellular_component owl:Class GO:0003367 biolink:NamedThing cell-cell adhesion involved in ameboidal cell migration The attachment of one ameboid cell to another that contributes to the establishment of cell polarity that is part of the directed movement of one of the cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T05:15:49Z biological_process owl:Class GO:0003365 biolink:NamedThing establishment of cell polarity involved in ameboidal cell migration The specification and formation of anisotropic intracellular organization that contributes to the self-propelled directed movement of an ameboid cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-08T04:50:41Z biological_process owl:Class GO:0005723 biolink:NamedThing alpha-heterochromatin A small, compact region of heterochromatin located in the middle of the polytene chromosome chromocenter, which undergoes little or no replication during polytenization. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052706 biolink:NamedThing histidine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + L-histidine = S-adenosyl-L-homocysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine. tmpzr1t_l9r_go_relaxed.owl histidine methyltransferase activity|histidine-alpha-N-methyltransferase activity|S-adenosyl-L-methionine:L-histidine Nalpha-methyltransferase activity|S-adenosyl-L-methionine:L-histidine alpha-N-methyltransferase activity ai 2011-08-05T11:57:40Z molecular_function owl:Class GO:0031526 biolink:NamedThing brush border membrane The portion of the plasma membrane surrounding the brush border. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005903 biolink:NamedThing brush border The dense covering of microvilli on the apical surface of an epithelial cell in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Brush_border cellular_component owl:Class GO:0048288 biolink:NamedThing nuclear membrane fusion involved in karyogamy The joining of 2 or more lipid bilayer membranes that surround the nucleus during the creation of a single nucleus from multiple nuclei. tmpzr1t_l9r_go_relaxed.owl nuclear membrane fusion during karyogamy biological_process owl:Class GO:2001239 biolink:NamedThing regulation of extrinsic apoptotic signaling pathway in absence of ligand Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway in absence of ligand. tmpzr1t_l9r_go_relaxed.owl regulation of extrinsic apoptotic signalling pathway in absence of ligand|regulation of extrinsic apoptosis in absence of ligand|regulation of dependence receptor signaling pathway pr 2011-11-24T01:33:18Z biological_process owl:Class GO:0030292 biolink:NamedThing protein tyrosine kinase inhibitor activity Stops, prevents or reduces the activity of a protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990270 biolink:NamedThing platelet-derived growth factor receptor-ligand complex A tetrameric protein complex consisting of two platelet-derived growth factor (PDGF) receptor subunits and two PDGF ligand subunits. Binding of the PDGF ligand dimer to the PDGF receptor in the plasma membrane induces receptor dimerisation and activation. PDGFs are involved in a wide variety of signalling processes and are found in all vertebrates. At least two different receptor chains (A and B) and four types of ligand chains (A, B, C, and D) are known forming a wide variety of combinations of receptor-ligand complexes. tmpzr1t_l9r_go_relaxed.owl PDGF-CC-receptor alpha complex|PDGF-CC-receptor beta complex|PDGF-AB-receptor alpha complex|PDGF-BB-receptor alpha-beta complex|PDGF-DD-receptor alpha-beta complex|PDGF-AA-receptor alpha complex|PDGF-AB-receptor beta complex|PDGF receptor-ligand complex|PDGF-BB-receptor beta complex|PDGF-BB-receptor alpha complex|PDGF-DD-receptor beta complex|receptor-ligand complex|PDGF-CC-receptor alpha-beta complex|PDGF complex An example of this is PDGFA-PGFRA in human (UniProt symbols P04085, P16234) in PMID:7679113 (inferred from direct assay). bhm 2014-01-14T11:12:22Z cellular_component owl:Class GO:0060855 biolink:NamedThing venous endothelial cell migration involved in lymph vessel development The orderly movement of venous endothelial cells out of the veins giving rise to the precursors of lymphatic endothelial cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T12:07:27Z biological_process owl:Class GO:1902979 biolink:NamedThing mitotic DNA replication termination Any DNA replication termination involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication termination involved in mitotic cell cycle DNA replication jl 2014-05-06T19:19:49Z biological_process owl:Class GO:0031145 biolink:NamedThing anaphase-promoting complex-dependent catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism|cyclin catabolism|APC-dependent proteasomal ubiquitin-dependent protein catabolism|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein degradation|degradation of cyclin|cyclin breakdown|cyclin catabolic process|negative regulation of cyclin-dependent protein serine/threonine kinase by cyclin degradation|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|APC-dependent proteasomal ubiquitin-dependent protein catabolic process|cyclin degradation|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein breakdown GO:0008054 biological_process owl:Class GO:0060664 biolink:NamedThing epithelial cell proliferation involved in salivary gland morphogenesis The multiplication or reproduction of epithelial cells of the submandibular salivary gland, resulting in the expansion of a cell population and the shaping of the gland. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-01T08:36:13Z biological_process owl:Class GO:0003033 biolink:NamedThing detection of hypoxic conditions in blood by aortic body chemoreceptor signaling The process in which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the aortic bodies. tmpzr1t_l9r_go_relaxed.owl detection of hypoxic conditions in blood by aortic body chemoreceptor signalling biological_process owl:Class GO:0002778 biolink:NamedThing antibacterial peptide production The synthesis or release of an antibacterial peptide during an immune response, resulting in an increase in intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. biological_process owl:Class GO:0032284 biolink:NamedThing plastid biotin carboxylase complex A biotin carboxylase complex located in the stroma of a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000914 biolink:NamedThing phragmoplast assembly The formation of a structure composed of actin, myosin, and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). tmpzr1t_l9r_go_relaxed.owl phragmoplast formation biological_process owl:Class GO:1905432 biolink:NamedThing regulation of retrograde trans-synaptic signaling by neuropeptide Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by neuropeptide. tmpzr1t_l9r_go_relaxed.owl regulation of neuropeptide-mediated retrograde trans-synaptic signaling bf 2016-09-14T10:56:47Z biological_process owl:Class GO:0071166 biolink:NamedThing ribonucleoprotein complex localization Any process in which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of ribonucleoprotein complex localization|cellular ribonucleoprotein complex localization|RNP localization|ribonucleoprotein complex localisation mah 2009-11-19T04:46:05Z biological_process owl:Class GO:0007496 biolink:NamedThing anterior midgut development The process whose specific outcome is the progression of the anterior midgut over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035253 biolink:NamedThing ciliary rootlet A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm. tmpzr1t_l9r_go_relaxed.owl cilium rootlet|cilial rootlet cellular_component owl:Class GO:0048802 biolink:NamedThing notum morphogenesis The process in which the anatomical structures of the dorsal part of the body are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007472 biolink:NamedThing wing disc morphogenesis The process in which the anatomical structures derived from the wing disc are generated and organized. This includes the transformation of a wing imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the wing hinge, wing blade and pleura. tmpzr1t_l9r_go_relaxed.owl wing disc metamorphosis biological_process owl:Class GO:0000486 biolink:NamedThing cleavage between 5.8S rRNA and 2S rRNA of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Endonucleolytic cleavage between the 5.8S rRNA and the 2S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060670 biolink:NamedThing branching involved in labyrinthine layer morphogenesis The process in which the branches of the fetal placental villi are generated and organized. The villous part of the placenta is called the labyrinth layer. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T10:40:40Z biological_process owl:Class GO:1901664 biolink:NamedThing regulation of NAD+ ADP-ribosyltransferase activity Any process that modulates the frequency, rate or extent of NAD+ ADP-ribosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl regulation of poly(ADP-ribose)polymerase activity|regulation of poly(adenosine diphosphate ribose) polymerase activity|regulation of ADP-ribosyltransferase (polymerizing) activity|regulation of poly(ADP-ribose) synthase activity|regulation of NAD ADP-ribosyltransferase activity|regulation of NAD+:poly(adenine-diphosphate-D-ribosyl)-acceptor ADP-D-ribosyl-transferase activity|regulation of poly(ADP-ribose) synthetase activity vk 2012-11-20T18:50:07Z biological_process owl:Class GO:0003360 biolink:NamedThing brainstem development The progression of the brainstem from its formation to the mature structure. The brainstem is the part of the brain that connects the brain with the spinal cord. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-03T10:47:20Z biological_process owl:Class GO:0070575 biolink:NamedThing peptide mating pheromone maturation involved in regulation of pheromone-induced unidirectional conjugation The formation of a mature peptide mating pheromone by proteolysis and/or modification of a peptide precursor, occurring in the context of pheromone-induced unidirectional conjugation. tmpzr1t_l9r_go_relaxed.owl peptide mating pheromone formation involved in pheromone-induced unidirectional conjugation|peptide mating pheromone processing involved in pheromone-induced unidirectional conjugation mah 2009-04-20T04:32:07Z biological_process owl:Class GO:0060242 biolink:NamedThing contact inhibition The series of events in which information about the density of cells in a population is received by direct cell-cell contact and is converted into a molecular signal, resulting in the cessation of cell growth or proliferation. tmpzr1t_l9r_go_relaxed.owl detection of cell density by contact stimulus|detection of cell density by contact stimulus involved in contact inhibition Wikipedia:Contact_inhibition GO:0060248|GO:0060246 biological_process owl:Class GO:1903575 biolink:NamedThing cornified envelope assembly The aggregation, arrangement and bonding together of a set of components to form a cornified envelope. tmpzr1t_l9r_go_relaxed.owl cornified envelope formation An example of this is syntaxin 4 in PMID:22226963. pr 2014-10-28T10:22:49Z biological_process owl:Class GO:1902982 biolink:NamedThing DNA strand elongation involved in premeiotic DNA replication Any DNA strand elongation involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA strand elongation involved in meiotic cell cycle DNA replication jl 2014-05-06T20:33:15Z biological_process owl:Class GO:0005933 biolink:NamedThing cellular bud A protuberance from a cell of an organism that reproduces by budding, which will grow larger and become a separate daughter cell after nuclear division, cytokinesis, and cell wall formation (when appropriate). The daughter cell may completely separate from the mother cell, or the mother and daughter cells may remain associated. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003393 biolink:NamedThing neuron migration involved in retrograde extension The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:36:03Z biological_process owl:Class GO:0031134 biolink:NamedThing sister chromatid biorientation The cell cycle process in which sister chromatids establish stable attachments to microtubules emanating from opposite spindle poles. tmpzr1t_l9r_go_relaxed.owl chromosome biorientation|sister kinetochore biorientation biological_process owl:Class GO:0007274 biolink:NamedThing neuromuscular synaptic transmission The process of synaptic transmission from a neuron to a muscle, across a synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061811 biolink:NamedThing ADP-ribosyl cyclase activity Catalysis of the reaction: NAD = cyclic ADP-ribose + nicotinamide. tmpzr1t_l9r_go_relaxed.owl dph 2016-11-11T13:25:18Z molecular_function owl:Class GO:0036186 biolink:NamedThing early phagosome membrane The lipid bilayer surrounding an early phagosome. tmpzr1t_l9r_go_relaxed.owl early phagocytic vesicle membrane bf 2012-04-16T02:37:30Z cellular_component owl:Class GO:0055097 biolink:NamedThing high density lipoprotein particle mediated signaling A series of molecular signals mediated by the detection of high density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl high density lipoprotein particle-mediated signaling|high density lipoprotein mediated signalling|high density lipoprotein particle mediated signal transduction biological_process owl:Class GO:0071403 biolink:NamedThing cellular response to high density lipoprotein particle stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high density lipoprotein particle stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to high-density lipoprotein particle stimulus|response to high density lipoprotein particle|response to high density lipoprotein particle stimulus mah 2009-12-14T02:51:43Z GO:0055099 biological_process owl:Class GO:0004915 biolink:NamedThing interleukin-6 receptor activity Combining with interleukin-6 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl gp130|IL-6 receptor activity|IL-6R molecular_function owl:Class GO:0036365 biolink:NamedThing transforming growth factor beta2 activation The release of transforming growth factor beta 2 (TGF-beta2) from its latent state. tmpzr1t_l9r_go_relaxed.owl TGF-beta 2 activation|TGFB2 activation|TGFbeta 2 activation bf 2012-09-24T10:15:11Z biological_process owl:Class GO:0010783 biolink:NamedThing proboscis morphogenesis, eye-antennal disc-derived The process in which the anatomical structures of the proboscis that are derived from the eye-antennal disc are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016592 biolink:NamedThing mediator complex A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. tmpzr1t_l9r_go_relaxed.owl TRAP complex|Srb-mediator complex|L mediator complex|CDK8-containing TRAP/mediator complex Wikipedia:Mediator_(coactivator) GO:0000119 cellular_component owl:Class GO:0014818 biolink:NamedThing skeletal muscle satellite cell fate determination The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003047 biolink:NamedThing regulation of systemic arterial blood pressure by epinephrine The regulation of blood pressure mediated by the catecholamine signaling molecule epinephrine. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by epinephrine|regulation of blood pressure by adrenaline biological_process owl:Class GO:0003153 biolink:NamedThing closure of embryonic heart tube Creation of the central hole of the embryonic heart tube by sealing the edges of an epithelial fold. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-23T10:14:54Z biological_process owl:Class GO:0007493 biolink:NamedThing endodermal cell fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into an endoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl endoderm cell fate determination Note that this term was 'endoderm determination'. Changed string to make it more consistent with parent term 'cell fate determination'. biological_process owl:Class GO:2000543 biolink:NamedThing positive regulation of gastrulation Any process that activates or increases the frequency, rate or extent of gastrulation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-04-01T04:10:15Z biological_process owl:Class GO:0005638 biolink:NamedThing lamin filament Any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope. They are classified as lamins A, B and C. tmpzr1t_l9r_go_relaxed.owl type V intermediate filament cellular_component owl:Class GO:0030540 biolink:NamedThing female genitalia development The process whose specific outcome is the progression of the female genitalia over time, from formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl female genital development biological_process owl:Class GO:2001109 biolink:NamedThing regulation of lens epithelial cell proliferation Any process that modulates the frequency, rate or extent of lens epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-30T02:04:53Z biological_process owl:Class GO:1902212 biolink:NamedThing negative regulation of prolactin signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of prolactin signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of prolactin-mediated signaling pathway|inhibition of PRL signaling pathway|down regulation of prolactin signaling pathway|down regulation of PRL signaling pathway|downregulation of prolactin-mediated signaling pathway|inhibition of prolactin-mediated signaling pathway|down regulation of prolactin-mediated signaling pathway|inhibition of prolactin signaling pathway|downregulation of prolactin signaling pathway|downregulation of PRL signaling pathway|down-regulation of PRL signaling pathway|negative regulation of prolactin-mediated signaling pathway|negative regulation of PRL signaling pathway|down-regulation of prolactin signaling pathway lb 2013-06-12T10:10:12Z biological_process owl:Class GO:0062120 biolink:NamedThing LinE complex assembly The aggregation, arrangement and bonding together of a set of components during meiotic prophase to form a LinE complex, the protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins. tmpzr1t_l9r_go_relaxed.owl dph 2019-03-19T14:14:25Z biological_process owl:Class GO:0048226 biolink:NamedThing Casparian strip Region of plant cell wall specialised to act as a seal to prevent back leakage of secreted material (analogous to tight junction between epithelial cells). Found particularly where root parenchymal cells secrete solutes into xylem vessels. The barrier is composed of suberin; a fatty substance, containing long chain fatty acids and fatty esters, also found in the cell walls of cork cells (phellem) in higher plants. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Casparian_strip cellular_component owl:Class GO:0014055 biolink:NamedThing acetylcholine secretion, neurotransmission The regulated release of acetylcholine by a cell. The acetylcholine acts as a neurotransmitter that acts in both the peripheral nervous system (PNS) and central nervous system (CNS). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035801 biolink:NamedThing adrenal cortex development The process whose specific outcome is the progression of the adrenal cortex over time, from its formation to the mature structure. The adrenal cortex is located at the periphery of the adrenal gland and controls glucose and electrolyte metabolism, response to stress and sexual development through the production of different classes of steroid hormones (glucocorticoids, mineralocorticoids and androgens). tmpzr1t_l9r_go_relaxed.owl adrenal gland cortex development bf 2011-04-18T10:25:39Z biological_process owl:Class GO:0140213 biolink:NamedThing negative regulation of long-chain fatty acid import into cell Any process that stops, prevents or reduces the frequency, rate or extent of long-chain fatty acid import into a cell. tmpzr1t_l9r_go_relaxed.owl pg 2018-04-10T15:13:28Z biological_process owl:Class GO:0004705 biolink:NamedThing JUN kinase activity Catalysis of the reaction: JUN + ATP = JUN phosphate + ADP. This reaction is the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors. tmpzr1t_l9r_go_relaxed.owl c-Jun N-terminal kinase activity|SAPK1|JNK|JNK3alpha1 Reactome:R-HSA-168136|Reactome:R-HSA-205132|Reactome:R-HSA-9673789|Reactome:R-HSA-205075|Reactome:R-HSA-204949 molecular_function owl:Class GO:0046982 biolink:NamedThing protein heterodimerization activity Binding to a nonidentical protein to form a heterodimer. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003305 biolink:NamedThing cell migration involved in heart jogging The orderly movement of a cell of the myocardium from one site to another that will contribute to heart jogging. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T11:05:46Z biological_process owl:Class GO:0015901 biolink:NamedThing cycloheximide transport The directed movement of cycloheximide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Cycloheximide is an antibiotic produced by Streptomyces which interferes with protein synthesis in eukaryotes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035161 biolink:NamedThing imaginal disc lineage restriction Formation and/or maintenance of a lineage boundary between compartments in an imaginal disc that cells cannot cross, thus separating the populations of cells in each compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032584 biolink:NamedThing growth cone membrane The portion of the plasma membrane surrounding a growth cone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070246 biolink:NamedThing natural killer cell apoptotic process Any apoptotic process in a natural killer cell, a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation. tmpzr1t_l9r_go_relaxed.owl natural killer cell apoptosis|NK cell apoptosis biological_process owl:Class GO:0032123 biolink:NamedThing deep fiber Inward projections of the cytoskeletal structures of the oral apparatus, which form a fiber that extends past the cytostome into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl deep fibre cellular_component owl:Class GO:0031460 biolink:NamedThing glycine betaine transport The directed movement of glycine betaine, N-trimethylglycine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl N-trimethylglycine transport biological_process owl:Class GO:1902066 biolink:NamedThing regulation of cell wall pectin metabolic process Any process that modulates the frequency, rate or extent of cell wall pectin metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of plant-type cell wall pectin metabolic process|regulation of pectin metabolism during cell wall biogenesis|regulation of cell wall pectin metabolism|regulation of cellulose and pectin-containing cell wall pectin metabolic process tb 2013-04-17T20:05:56Z biological_process owl:Class GO:1903144 biolink:NamedThing actomyosin contractile ring actin filament Any actin filament that is part of a actomyosin contractile ring. tmpzr1t_l9r_go_relaxed.owl actin filament of CAR|actin filament of actomyosin ring|actin filament of actomyosin contractile ring|actin filament of contractile actomyosin ring|actin filament of cytokinetic ring vw 2014-07-06T16:20:05Z cellular_component owl:Class GO:0035344 biolink:NamedThing hypoxanthine transport The directed movement of hypoxanthine, 6-hydroxypurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 6-hydroxypurine transport|hypoxanthine transmembrane transport bf 2010-03-04T10:39:55Z biological_process owl:Class GO:0032903 biolink:NamedThing regulation of nerve growth factor production Any process that modulates the frequency, rate, or extent of production of nerve growth factor (NGF). tmpzr1t_l9r_go_relaxed.owl regulation of NGF production|regulation of beta-nerve growth factor production biological_process owl:Class GO:0004385 biolink:NamedThing guanylate kinase activity Catalysis of the reaction: ATP + GMP = ADP + GDP. tmpzr1t_l9r_go_relaxed.owl GMP kinase activity|deoxyguanylate kinase activity|membrane-associated guanylate kinase|ATP:(d)GMP phosphotransferase activity|ATP:GMP phosphotransferase activity|5'-GMP kinase activity|guanosine monophosphate kinase activity MetaCyc:GUANYL-KIN-RXN|RHEA:20780|Reactome:R-HSA-110133|EC:2.7.4.8|Reactome:R-HSA-73788 molecular_function owl:Class GO:0000743 biolink:NamedThing nuclear migration involved in conjugation with cellular fusion The microtubule-based movement of nuclei towards one another as a prelude to karyogamy in organisms undergoing conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl nuclear migration during conjugation with cellular fusion|nuclear congression GO:0006946 biological_process owl:Class GO:1903107 biolink:NamedThing insulin receptor signaling pathway involved in dauer larval development Any insulin receptor signaling pathway that is involved in dauer larval development. tmpzr1t_l9r_go_relaxed.owl daf-2 receptor signaling pathway involved in dauer larval development|insulin receptor signalling pathway involved in dauer larval development kmv 2014-06-05T21:30:03Z biological_process owl:Class GO:1905427 biolink:NamedThing intracellular signal transduction involved in positive regulation of cell growth Any intracellular signal transduction that is involved in positive regulation of cell growth. tmpzr1t_l9r_go_relaxed.owl intracellular signaling pathway involved in upregulation of cell growth|intracellular protein kinase cascade involved in activation of cell growth|intracellular signal transduction pathway involved in positive regulation of cell growth|protein kinase cascade involved in up-regulation of cell growth|intracellular signaling cascade involved in upregulation of cell growth|intracellular signaling chain involved in up regulation of cell growth|intracellular protein kinase cascade involved in stimulation of cell growth|intracellular signal transduction pathway involved in up-regulation of cell growth|intracellular signaling chain involved in stimulation of cell growth|protein kinase cascade involved in stimulation of cell growth|signal transduction via intracellular signaling cascade involved in positive regulation of cell growth|intracellular signaling pathway involved in positive regulation of cell growth|intracellular signal transduction involved in up regulation of cell growth|intracellular signaling pathway involved in stimulation of cell growth|intracellular signaling chain involved in up-regulation of cell growth|protein kinase cascade involved in activation of cell growth|intracellular protein kinase cascade involved in positive regulation of cell growth|intracellular signal transduction involved in stimulation of cell growth|signal transduction via intracellular signaling cascade involved in up-regulation of cell growth|signal transduction via intracellular signaling cascade involved in activation of cell growth|signal transmission via intracellular cascade involved in activation of cell growth|intracellular protein kinase cascade involved in up-regulation of cell growth|signal transmission via intracellular cascade involved in positive regulation of cell growth|protein kinase cascade involved in positive regulation of cell growth|intracellular signaling pathway involved in up regulation of cell growth|protein kinase cascade involved in up regulation of cell growth|intracellular signal transduction involved in upregulation of cell growth|intracellular signal transduction involved in activation of cell growth|intracellular signaling pathway involved in up-regulation of cell growth|intracellular signaling cascade involved in activation of cell growth|intracellular signaling cascade involved in up regulation of cell growth|intracellular signal transduction pathway involved in upregulation of cell growth|intracellular protein kinase cascade involved in upregulation of cell growth|signal transduction via intracellular signaling cascade involved in up regulation of cell growth|intracellular signaling chain involved in positive regulation of cell growth|signal transmission via intracellular cascade involved in stimulation of cell growth|intracellular signaling chain involved in upregulation of cell growth|intracellular signaling cascade involved in stimulation of cell growth|intracellular signaling pathway involved in activation of cell growth|intracellular signaling cascade involved in up-regulation of cell growth|signal transmission via intracellular cascade involved in upregulation of cell growth|intracellular signaling cascade involved in positive regulation of cell growth|intracellular protein kinase cascade involved in up regulation of cell growth|signal transmission via intracellular cascade involved in up-regulation of cell growth|signal transmission via intracellular cascade involved in up regulation of cell growth|intracellular signal transduction pathway involved in up regulation of cell growth|signal transduction via intracellular signaling cascade involved in upregulation of cell growth|intracellular signaling chain involved in activation of cell growth|intracellular signal transduction involved in up-regulation of cell growth|intracellular signal transduction pathway involved in activation of cell growth|signal transduction via intracellular signaling cascade involved in stimulation of cell growth|protein kinase cascade involved in upregulation of cell growth|intracellular signal transduction pathway involved in stimulation of cell growth dph 2016-09-07T18:15:01Z biological_process owl:Class GO:0021722 biolink:NamedThing superior olivary nucleus maturation A developmental process, independent of morphogenetic (shape) change, that is required for the superior olivary nucleus to attain its fully functional state. The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. tmpzr1t_l9r_go_relaxed.owl superior olive maturation biological_process owl:Class GO:0035689 biolink:NamedThing chemokine (C-C motif) ligand 5 signaling pathway A series of molecular signals initiated by the binding of the chemokine CCL5 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl CCL5-mediated signaling pathway|chemokine (C-C motif) ligand 5 signalling pathway|RANTES-mediated signaling pathway bf 2011-02-24T12:56:13Z biological_process owl:Class GO:0021588 biolink:NamedThing cerebellum formation The process that gives rise to the cerebellum. This process pertains to the initial formation of a structure from unspecified parts. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062242 biolink:NamedThing double membrane vesicle viral factory membrane One of the two endoplasmic reticulum-derived lipid bilayer membranes that bound a double membrane vesicle viral factory. tmpzr1t_l9r_go_relaxed.owl membrane of double membrane vesicle viral factory dph 2020-04-20T20:42:28Z cellular_component owl:Class GO:0035849 biolink:NamedThing nephric duct elongation The process in which the nephric duct grows along its axis. A nephric duct is a tube that drains a primitive kidney. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-11T11:31:39Z biological_process owl:Class GO:0061939 biolink:NamedThing c-di-GMP signaling Any process that mediates the transfer of information from one cell to another using c-di-GMP as the signal. tmpzr1t_l9r_go_relaxed.owl cyclic di-(3':5')-guanosine monophosphate signaling|3',5'-cyclic di-GMP signaling|cyclic diguanylate signaling|cyclic di-GMP signaling dph 2017-09-14T18:59:04Z biological_process owl:Class GO:0006824 biolink:NamedThing cobalt ion transport The directed movement of cobalt (Co) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl cobalt transport biological_process owl:Class GO:0072086 biolink:NamedThing specification of loop of Henle identity The process in which the loop of Henle of the kidney nephron acquires its identity. tmpzr1t_l9r_go_relaxed.owl specification of intermediate tubule identity mah 2010-02-01T02:49:35Z GO:0072083 biological_process owl:Class GO:0060506 biolink:NamedThing smoothened signaling pathway involved in lung development The series of molecular signals generated as a consequence of activation of the transmembrane Smoothened-type protein. This process contributes to lung development. tmpzr1t_l9r_go_relaxed.owl hh signaling pathway involved in lung development|hedgehog signaling pathway involved in lung development|smoothened signalling pathway involved in lung development biological_process owl:Class GO:0001059 biolink:NamedThing transcription by RNA polymerase IV The synthesis of RNA from a DNA template by RNA polymerase IV, originating at a Pol IV-specific promoter. tmpzr1t_l9r_go_relaxed.owl transcription from RNA polymerase IV promoter|transcription from RNA pol IV promoter https://github.com/geneontology/go-ontology/issues/14854 krc 2010-09-23T03:51:35Z biological_process owl:Class GO:0015761 biolink:NamedThing mannose transmembrane transport The process in which mannose is transported across a lipid bilayer, from one side of a membrane to the other. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. tmpzr1t_l9r_go_relaxed.owl mannose transport biological_process owl:Class GO:0097480 biolink:NamedThing establishment of synaptic vesicle localization The directed movement of a synaptic vesicle or vesicles to a specific location. tmpzr1t_l9r_go_relaxed.owl establishment of synaptic vesicle localisation pr 2013-05-22T14:32:12Z biological_process owl:Class GO:0048823 biolink:NamedThing nucleate erythrocyte development The process aimed at the progression of a nucleate erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl nucleate RBC development|nucleate red blood cell development biological_process owl:Class GO:0043363 biolink:NamedThing nucleate erythrocyte differentiation The process in which a myeloid precursor cell acquires specializes features of an erythrocyte with a nucleus, as found in non-mammalian vertebrates such as birds. tmpzr1t_l9r_go_relaxed.owl nucleate RBC differentiation|nucleate red blood cell differentiation biological_process owl:Class GO:0060337 biolink:NamedThing type I interferon signaling pathway A series of molecular signals initiated by the binding of a type I interferon to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl type I interferon-mediated signaling pathway|type I interferon-activated signaling pathway|type I interferon-mediated signalling pathway biological_process owl:Class GO:0090139 biolink:NamedThing mitochondrial DNA packaging Any process in which mitochondrial DNA and associated proteins are formed into a compact, orderly structure. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T02:12:19Z biological_process owl:Class GO:1902263 biolink:NamedThing apoptotic process involved in embryonic digit morphogenesis Any apoptotic process that is involved in embryonic digit morphogenesis. tmpzr1t_l9r_go_relaxed.owl programmed cell death by apoptosis involved in embryonic digit morphogenesis|type I programmed cell death involved in embryonic digit morphogenesis|apoptotic cell death involved in embryonic digit morphogenesis|signaling (initiator) caspase activity involved in embryonic digit morphogenesis|apoptotic programmed cell death involved in embryonic digit morphogenesis|apoptotic program involved in embryonic digit morphogenesis|apoptosis involved in embryonic digit morphogenesis dph 2013-06-25T16:19:22Z biological_process owl:Class GO:0015150 biolink:NamedThing fucose transmembrane transporter activity Enables the transfer of fucose from one side of a membrane to the other. Fucose is 6-deoxygalactose and has two enantiomers, D-fucose and L-fucose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015756 biolink:NamedThing fucose transmembrane transport The process in which fucose is transported across a lipid bilayer, from one side of a membrane to the other. Fucose is 6-deoxygalactose and has two enantiomers, D-fucose and L-fucose. tmpzr1t_l9r_go_relaxed.owl fucose transport biological_process owl:Class GO:0021901 biolink:NamedThing early neuron fate commitment in forebrain The commitment of neuroepithelial cell to become a neuron that will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052616 biolink:NamedThing ent-kaur-16-en-19-ol oxidase activity Catalysis of the reaction: H+ + NADPH + ent-kaur-16-en-19-ol + oxygen = 2 H2O + NADP+ + ent-kaur-16-en-19-al. tmpzr1t_l9r_go_relaxed.owl RHEA:21304|EC:1.14.14.86|MetaCyc:RXN-5242 molecular_function owl:Class GO:0021687 biolink:NamedThing cerebellar molecular layer morphogenesis The process in which the anatomical structure of the cerebellar molecular layer is generated and organized. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060109 biolink:NamedThing medial layer of collagen and cuticulin-based cuticle extracellular matrix The fluid-filled cuticle layer that lies between the cortical and basal layers and is characterized by the presence of regularly spaced columnar struts that lie on either side of the annular furrows and link the two surrounding layers. In C. elegans, a defined medial layer is found only in adult animals. tmpzr1t_l9r_go_relaxed.owl medial layer struts cellular_component owl:Class GO:0015211 biolink:NamedThing purine nucleoside transmembrane transporter activity Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902980 biolink:NamedThing synthesis of RNA primer involved in premeiotic DNA replication Any synthesis of RNA primer involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl synthesis of RNA primer involved in meiotic cell cycle DNA replication jl 2014-05-06T19:19:54Z biological_process owl:Class GO:0010154 biolink:NamedThing fruit development The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038176 biolink:NamedThing positive regulation of SREBP signaling pathway in response to decreased oxygen levels Any process that activates or increases the frequency, rate or extent of the SREBP signaling pathway in response to a decrease in oxygen levels. tmpzr1t_l9r_go_relaxed.owl positive regulation of SREBP-mediated signaling pathway in absence of oxygen|positive regulation of SREBP-mediated signaling pathway in response to decreased oxygen levels bf 2012-07-20T01:30:25Z biological_process owl:Class GO:0003228 biolink:NamedThing atrial cardiac muscle tissue development The process whose specific outcome is the progression of cardiac muscle of the atrium over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl atrial myocardium development dph 2009-10-13T10:53:18Z biological_process owl:Class GO:0086057 biolink:NamedThing voltage-gated calcium channel activity involved in bundle of His cell action potential Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a bundle of His cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl voltage-gated calcium channel activity involved in bundle of His cardiac muscle cell action potential dph 2011-11-17T12:32:51Z molecular_function owl:Class GO:0048888 biolink:NamedThing neuromast mantle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuromast mantle cell. Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120120 biolink:NamedThing bilobe structure A cytoskeletal structure in some kinetoplastid species linking the structures of the ciliary pocket collar and the flagellum attachment zone (aka cilium attachment zone). tmpzr1t_l9r_go_relaxed.owl kinetoplastid flagellar hook complex Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. krc 2017-12-11T23:47:20Z cellular_component owl:Class GO:1904228 biolink:NamedThing positive regulation of glycogen synthase activity, transferring glucose-1-phosphate Any process that activates or increases the frequency, rate or extent of glycogen synthase activity, transferring glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl up-regulation of glycogen synthase activity, transferring glucose-1-phosphate|up regulation of glycogen synthase activity, transferring glucose-1-phosphate|upregulation of glycogen synthase activity, transferring glucose-1-phosphate|activation of glycogen synthase activity, transferring glucose-1-phosphate rl 2015-05-15T09:23:20Z biological_process owl:Class GO:0045250 biolink:NamedThing cytosolic pyruvate dehydrogenase complex Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). Usually contains fewer subunits than its eukaryotic counterpart; for example, the E. coli complex contains 12 E1 dimers, 8 E2 trimers, and 6 E3 dimers arranged in highly symmetric cubic order. tmpzr1t_l9r_go_relaxed.owl pyruvate dehydrogenase complex (lipoamide) Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The functions of this complex are represented by the molecular function terms 'pyruvate dehydrogenase (lipoamide) activity ; GO:0004739', 'dihydrolipoamide S-acetyltransferase activity ; GO:0004742', and 'dihydrolipoamide dehydrogenase activity ; GO:0004148'. cellular_component owl:Class GO:0014704 biolink:NamedThing intercalated disc A complex cell-cell junction at which myofibrils terminate in cardiomyocytes; mediates mechanical and electrochemical integration between individual cardiomyocytes. The intercalated disc contains regions of tight mechanical attachment (fasciae adherentes and desmosomes) and electrical coupling (gap junctions) between adjacent cells. tmpzr1t_l9r_go_relaxed.owl intercalated disk Wikipedia:Intercalated_disc cellular_component owl:Class GO:0015719 biolink:NamedThing allantoate transport The directed movement of allantoate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl allantoin/allantoate transport biological_process owl:Class GO:1901026 biolink:NamedThing ripoptosome assembly involved in necroptotic process The aggregation, arrangement and bonding together of ripoptosome components leading to a necroptotic process. tmpzr1t_l9r_go_relaxed.owl ripoptosome assembly involved in necroptosis pr 2012-06-19T08:54:28Z biological_process owl:Class GO:0033118 biolink:NamedThing esterosome membrane The lipid bilayer surrounding an esterosome. This membrane has characteristics of rough endoplasmic reticulum (RER) membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033117 biolink:NamedThing esterosome A vesicle filled with crystalline protein that shows sequence similarities with various esterases. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061303 biolink:NamedThing cornea development in camera-type eye The progression of the cornea over time, from its formation to the mature structure. The cornea is the transparent structure that covers the anterior of the eye. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T02:09:08Z biological_process owl:Class GO:0045451 biolink:NamedThing pole plasm oskar mRNA localization Any process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of pole plasm oskar mRNA localization|oocyte pole plasm oskar mRNA localization|pole plasm oskar mRNA localisation|establishment and maintenance of oskar mRNA localization in pole plasm biological_process owl:Class GO:0015689 biolink:NamedThing molybdate ion transport The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042813 biolink:NamedThing Wnt-activated receptor activity Combining with a Wnt protein and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Wnt receptor activity|frizzled receptor activity|frizzled-2 receptor activity molecular_function owl:Class GO:0009553 biolink:NamedThing embryo sac development The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. tmpzr1t_l9r_go_relaxed.owl female gametophyte development GO:0048230 biological_process owl:Class GO:0055040 biolink:NamedThing periplasmic flagellum Flagellar filaments located in the periplasmic space; characterized in spirochetes, in which they are essential for shape and motility. Composed of a core surrounded by two sheath layers, the flagella rotate to allow migration of the cell through viscous media, which would not be possible using external flagella. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034089 biolink:NamedThing establishment of meiotic sister chromatid cohesion The process in which the sister chromatids of a replicated chromosome become joined along the entire length of the chromosome during S phase during a meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048837 biolink:NamedThing sorocarp sorus development The process whose specific outcome is the progression of the sorocarp sorus over time, from its formation to the mature structure. A sorocarp sorus is the spore containing structure of a sorocarp. tmpzr1t_l9r_go_relaxed.owl sorocarp spore head morphogenesis|sorocarp sorus formation|sorocarp spore head formation biological_process owl:Class GO:0021668 biolink:NamedThing rhombomere 6 structural organization The process that contributes to creating the structural organization of rhombomere 6. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 6 structural organisation biological_process owl:Class GO:0032678 biolink:NamedThing regulation of interleukin-9 production Any process that modulates the frequency, rate, or extent of interleukin-9 production. tmpzr1t_l9r_go_relaxed.owl regulation of interleukin-9 biosynthetic process|regulation of IL-9 production GO:0045417 biological_process owl:Class GO:0048887 biolink:NamedThing cupula development The process whose specific outcome is the progression of the cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904298 biolink:NamedThing regulation of transcytosis Any process that modulates the frequency, rate or extent of transcytosis. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-09T22:53:26Z biological_process owl:Class GO:0043056 biolink:NamedThing forward locomotion Anterior movement of an organism, following the direction of the head of the animal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009539 biolink:NamedThing photosystem II reaction center An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone. tmpzr1t_l9r_go_relaxed.owl photosystem II reaction centre cellular_component owl:Class GO:0048383 biolink:NamedThing mesectoderm development The process whose specific outcome is the progression of the mesectoderm over time, from its formation to the mature structure. In animal embryos, mesectoderm development processes give rise to both mesoderm and ectoderm tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990244 biolink:NamedThing histone kinase activity (H2A-T120 specific) Catalysis of the transfer of a phosphate group to the threonine-120 residue of histone H2A. tmpzr1t_l9r_go_relaxed.owl histone threonine kinase activity (H2A-T120 specific) sp 2013-12-04T06:38:32Z molecular_function owl:Class GO:0044183 biolink:NamedThing protein folding chaperone Binding to a protein or a protein-containing complex to assist the protein folding process. tmpzr1t_l9r_go_relaxed.owl protein binding involved in protein folding|chaperone activity Reactome:R-HSA-9018785 jl 2009-09-25T11:33:48Z molecular_function owl:Class GO:0051082 biolink:NamedThing unfolded protein binding Binding to an unfolded protein. tmpzr1t_l9r_go_relaxed.owl chaperone activity https://github.com/geneontology/go-ontology/issues/21436 Reactome:R-HSA-9694337|Reactome:R-HSA-9683772 molecular_function owl:Class GO:0043505 biolink:NamedThing CENP-A containing nucleosome A form of nucleosome located only at the centromere, in which the histone H3 is replaced by the variant form CENP-A (sometimes known as CenH3). tmpzr1t_l9r_go_relaxed.owl CENP-S-T-W-X|CenH3 containing nucleosome|centromere specific nucleosome|centromere-specific nucleosome|centromeric nucleosome|CNP-T-W-S-X complex cellular_component owl:Class GO:0035574 biolink:NamedThing histone H4-K20 demethylation The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone. tmpzr1t_l9r_go_relaxed.owl bf 2010-08-13T10:50:06Z biological_process owl:Class GO:0030539 biolink:NamedThing male genitalia development The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl male genital development biological_process owl:Class GO:0061300 biolink:NamedThing cerebellum vasculature development The process whose specific outcome is the progression of the vasculature of the cerebellum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-06T03:36:40Z biological_process owl:Class GO:0021971 biolink:NamedThing corticospinal neuron axon guidance through the medullary pyramid The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after exiting the basilar pons through the medullary pyramid in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through the medullary pyramid biological_process owl:Class GO:0060324 biolink:NamedThing face development The biological process whose specific outcome is the progression of a face from an initial condition to its mature state. The face is the ventral division of the head. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044327 biolink:NamedThing dendritic spine head Distal part of the dendritic spine, that carries the post-synaptic density. tmpzr1t_l9r_go_relaxed.owl spine head NIF_Subcellular:sao952643730 jl 2010-08-18T02:33:12Z cellular_component owl:Class GO:1901490 biolink:NamedThing regulation of lymphangiogenesis Any process that modulates the frequency, rate or extent of lymphangiogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of lymph vessel formation dph 2012-10-15T13:08:17Z biological_process owl:Class GO:0033985 biolink:NamedThing acidocalcisome lumen The volume enclosed by the membranes of an acidocalcisome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071139 biolink:NamedThing resolution of recombination intermediates The cleavage and rejoining of intermediates, such as Holliday junctions, formed during DNA recombination to produce two intact molecules in which genetic material has been exchanged. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-16T12:02:21Z biological_process owl:Class GO:0072032 biolink:NamedThing proximal convoluted tubule segment 2 development The process whose specific outcome is the progression of the S2 portion of the proximal convoluted tubule over time, from its formation to the mature structure. The S2 portion of the tubule is involved in reabsorption of water and sodium chloride. tmpzr1t_l9r_go_relaxed.owl S2 development mah 2010-01-25T02:56:36Z biological_process owl:Class GO:0060091 biolink:NamedThing kinocilium A nonmotile primary cilium that is found at the apical surface of auditory receptor cells. The kinocilium is surrounded by actin-based stereocilia. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Kinocilium cellular_component owl:Class GO:0140399 biolink:NamedThing aflatoxin B synthase activity Catalyzes the reaction: 8-O-methylsterigmatocystin + 2 [reduced NADPH--hemoprotein reductase] + 2 O(2) <=> aflatoxin B + 2 [oxidized NADPH--hemoprotein reductase] + H(2)O + methanol + CO(2). Produces both aflatoxin B(1) and aflatoxin B(2). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9497|EC:1.14.14.117|MetaCyc:RXN-9502|RHEA:35759 pg 2019-11-29T11:06:07Z molecular_function owl:Class GO:0043054 biolink:NamedThing dauer exit Exit from the facultative diapause of the dauer (enduring) larval stage of nematode development. tmpzr1t_l9r_go_relaxed.owl exit from nematode dormancy biological_process owl:Class GO:0009353 biolink:NamedThing mitochondrial oxoglutarate dehydrogenase complex A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2) within the mitochondrial matrix. An example of this complex is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl See also the molecular functions term 'oxoglutarate dehydrogenase (succinyl-transferring) activity ; GO:0004591', 'dihydrolipoyllysine-residue succinyltransferase activity ; GO:0004149' and 'dihydrolipoyl dehydrogenase activity ; GO:0004148'. cellular_component owl:Class GO:0072359 biolink:NamedThing circulatory system development The process whose specific outcome is the progression of the circulatory system over time, from its formation to the mature structure. The circulatory system is the organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis. tmpzr1t_l9r_go_relaxed.owl cardiovascular system development mah 2010-11-16T11:27:39Z GO:0072358 biological_process owl:Class GO:0000328 biolink:NamedThing fungal-type vacuole lumen The volume enclosed within the vacuolar membrane of a vacuole, the shape of which correlates with cell cycle phase. An example of this structure is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl lumen of vacuole with cell cycle-correlated morphology cellular_component owl:Class GO:0002144 biolink:NamedThing cytosolic tRNA wobble base thiouridylase complex A complex of two proteins involved in the thiolation of uridine 34 (U34) of tRNAs decoding two-family box triplets. tmpzr1t_l9r_go_relaxed.owl tRNA thiouridylase|Cut1-Cut2 complex hjd 2009-05-08T02:32:55Z cellular_component owl:Class GO:0070867 biolink:NamedThing mating projection tip membrane The portion of the plasma membrane surrounding a mating projection tip. tmpzr1t_l9r_go_relaxed.owl mating projection membrane fusion domain|shmoo tip membrane mah 2009-08-19T04:05:58Z cellular_component owl:Class GO:0008035 biolink:NamedThing high-density lipoprotein particle binding Binding to high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE. tmpzr1t_l9r_go_relaxed.owl HDL binding molecular_function owl:Class GO:0034154 biolink:NamedThing toll-like receptor 7 signaling pathway Any series of molecular signals generated as a consequence of binding to toll-like receptor 7. tmpzr1t_l9r_go_relaxed.owl TLR7 signaling pathway|toll-like receptor 7 signalling pathway biological_process owl:Class GO:0035893 biolink:NamedThing negative regulation of platelet aggregation in other organism Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of platelet aggregation in a second organism. tmpzr1t_l9r_go_relaxed.owl inhibition of platelet aggregation in other organism|suppression of platelet aggregation in other organism|downregulation of platelet aggregation in other organism|down-regulation of platelet aggregation in other organism bf 2011-06-15T02:24:43Z biological_process owl:Class GO:0098004 biolink:NamedThing virus tail fiber assembly The aggregation, arrangement and bonding together of a set of components to form a virus tail fiber. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-18T16:08:15Z biological_process owl:Class GO:0098003 biolink:NamedThing viral tail assembly The aggregation, arrangement and bonding together of a set of components to form a virus tail. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail assembly|virus tail assembly bm 2012-07-18T16:01:59Z biological_process owl:Class GO:1904039 biolink:NamedThing negative regulation of iron export across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of export of iron ions from inside of a cell, across the plasma membrane and into the extracellular region. tmpzr1t_l9r_go_relaxed.owl negative regulation of ferrous iron export|down-regulation of iron(2+) export|down regulation of iron(2+) export|downregulation of iron(2+) export|downregulation of ferrous iron export|negative regulation of iron(2+) export|down regulation of ferrous iron export|inhibition of ferrous iron export|down-regulation of ferrous iron export|inhibition of iron(2+) export kom 2015-03-16T15:36:43Z biological_process owl:Class GO:0033095 biolink:NamedThing aleurone grain A membrane-bounded storage granule found in cells of the aleurone layer in plants; contains either a protein matrix, protein-carbohydrate bodies and/or globoids. Aleurone grains are formed by the vacuole, rough endoplasmic reticulum and dictyosomes. tmpzr1t_l9r_go_relaxed.owl aleurone body cellular_component owl:Class GO:0034435 biolink:NamedThing cholesterol esterification A lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and cholesterol. In the blood this process is associated with the conversion of free cholesterol into cholesteryl ester, which is then sequestered into the core of a lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003887 biolink:NamedThing DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. tmpzr1t_l9r_go_relaxed.owl DNA duplicase activity|Klenow fragment|Tca DNA polymerase|epsilon DNA polymerase activity|DNA polymerase gamma|kappa DNA polymerase activity|lambda DNA polymerase activity|nu DNA polymerase activity|zeta DNA polymerase activity|alpha DNA polymerase activity|beta DNA polymerase activity|DNA nucleotidyltransferase (DNA-directed) activity|mu DNA polymerase activity|theta DNA polymerase activity|deoxyribonucleic duplicase activity|DNA polymerase V activity|DNA polymerase I|DNA-dependent DNA polymerase activity|DNA polymerase alpha|DNA polymerase II|deoxyribonucleic polymerase I|duplicase|DNA replicase activity|DNA polymerase beta|delta DNA polymerase activity|Taq DNA polymerase|sigma DNA polymerase activity|deoxyribonucleic acid duplicase activity|iota DNA polymerase activity|sequenase|deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity|eta DNA polymerase activity|gamma DNA-directed DNA polymerase activity|DNA polymerase III|Taq Pol I Reactome:R-HSA-5655892|Reactome:R-HSA-68950|Reactome:R-HSA-5358579|Reactome:R-HSA-110368|Reactome:R-HSA-5649883|Reactome:R-HSA-5656148|Reactome:R-HSA-110311|Reactome:R-HSA-6782208|Reactome:R-HSA-5649723|Reactome:R-HSA-111253|Reactome:R-HSA-6786166|Reactome:R-HSA-174444|MetaCyc:DNA-DIRECTED-DNA-POLYMERASE-RXN|Reactome:R-HSA-5656158|Reactome:R-HSA-5687360|Reactome:R-HSA-5653840|Reactome:R-HSA-69116|Reactome:R-HSA-164505|EC:2.7.7.7|Reactome:R-HSA-5693593|Reactome:R-HSA-164513|Reactome:R-HSA-73932|Reactome:R-HSA-5655965|Reactome:R-HSA-5687640|Reactome:R-HSA-5691001|Reactome:R-HSA-110317|Reactome:R-HSA-174427|Reactome:R-HSA-110319 GO:0016449|GO:0016451|GO:0003888|GO:0003895|GO:0003893|GO:0016452|GO:0003894|GO:0016448|GO:0008723|GO:0003890|GO:0016000|GO:0019984|GO:0003889|GO:0015999|GO:0016450|GO:0003891 molecular_function owl:Class GO:1900001 biolink:NamedThing negative regulation of anthocyanin catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of anthocyanin catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of anthocyanin catabolic process|down regulation of anthocyanin degradation|negative regulation of anthocyanin breakdown|negative regulation of anthocyanin degradation|down regulation of anthocyanin catabolism|negative regulation of anthocyanin catabolism|down regulation of anthocyanin breakdown tb 2011-12-20T07:12:11Z biological_process owl:Class GO:0099542 biolink:NamedThing trans-synaptic signaling by endocannabinoid Cell-cell signaling in either direction across the synaptic cleft, mediated by an endocannabinoid ligand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009515 biolink:NamedThing granal stacked thylakoid Appressed thylakoid membranes that are part of a granum (stacked regions). A characteristic of these appressed regions is the preferential localization of photosystem II. tmpzr1t_l9r_go_relaxed.owl chloroplast stacked thylakoid cellular_component owl:Class GO:0009542 biolink:NamedThing granum Distinct stack of lamellae seen within chloroplasts. Grana contain the pigments, electron transfer compounds, and enzymes essential to the light-dependent reactions of photosynthesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070147 biolink:NamedThing mitochondrial cysteinyl-tRNA aminoacylation The process of coupling cysteine to cysteinyl-tRNA in a mitochondrion, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000138 biolink:NamedThing Golgi trans cisterna The Golgi cisterna farthest from the endoplasmic reticulum; the final processing compartment through which proteins pass before exiting the Golgi apparatus; the compartment in which N-linked protein glycosylation is completed. tmpzr1t_l9r_go_relaxed.owl late Golgi cellular_component owl:Class GO:0046790 biolink:NamedThing virion binding Binding to a virion, either by binding to components of the capsid or the viral envelope. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120317 biolink:NamedThing sperm mitochondrial sheath assembly The assembly and organization of the sperm mitochondrial sheath, the tightly packed helical sheath of ATP-producing mitochondria restricted to the midpiece of the sperm flagellum. tmpzr1t_l9r_go_relaxed.owl krc 2021-04-29T01:52:38Z biological_process owl:Class GO:0075303 biolink:NamedThing positive regulation of basidiospore formation Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi basidiomycetes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006856 biolink:NamedThing eye pigment precursor transport The directed movement of eye pigment precursors, the inactive forms of visual pigments, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004505 biolink:NamedThing phenylalanine 4-monooxygenase activity Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin. tmpzr1t_l9r_go_relaxed.owl phenylalaninase activity|phenylalanine hydroxylase activity|PAH activity|L-phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase (4-hydroxylating)|phenylalanine 4-hydroxylase activity https://github.com/geneontology/go-ontology/issues/20583 EC:1.14.16.1|MetaCyc:PHENYLALANINE-4-MONOOXYGENASE-RXN|RHEA:20273|Reactome:R-HSA-71118|Reactome:R-HSA-5649483 molecular_function owl:Class GO:0019293 biolink:NamedThing tyrosine biosynthetic process, by oxidation of phenylalanine The conversion of phenylalanine to tyrosine. tmpzr1t_l9r_go_relaxed.owl tyrosine synthesis, by oxidation of phenylalanine|tyrosine anabolism, by oxidation of phenylalanine|L-tyrosine biosynthesis IV|tyrosine formation, by oxidation of phenylalanine https://github.com/geneontology/go-ontology/issues/20583 MetaCyc:PWY-6134 GO:0019291 biological_process owl:Class GO:0098755 biolink:NamedThing maintenance of seed dormancy by absisic acid The process by which seed dormancy is maintained by the presence of absisic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035281 biolink:NamedThing pre-miRNA export from nucleus Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product. tmpzr1t_l9r_go_relaxed.owl pre-microRNA export out of nucleus|pre-microRNA export from nucleus|pre-microRNA transport from nucleus to cytoplasm|pre-microRNA export from cell nucleus|pre-microRNA-nucleus export https://github.com/geneontology/go-ontology/issues/22245 biological_process owl:Class GO:0044793 biolink:NamedThing negative regulation by host of viral process A process in which a host organism stops, prevents or reduces the frequency, rate or extent of a process being mediated by a virus with which it is infected. tmpzr1t_l9r_go_relaxed.owl jl 2013-06-06T11:16:00Z biological_process owl:Class GO:0021721 biolink:NamedThing superior olivary nucleus structural organization The process that contributes to the act of creating the structural organization of the superior olivary nucleus structure. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. tmpzr1t_l9r_go_relaxed.owl superior olivary nucleus structural organisation biological_process owl:Class GO:0099546 biolink:NamedThing protein catabolic process, modulating synaptic transmission Any protein degradation process, occurring at a presynapse, that regulates synaptic transmission. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0060318 biolink:NamedThing definitive erythrocyte differentiation Erythrocyte differentiation which occurs as part of the process of definitive hemopoiesis. tmpzr1t_l9r_go_relaxed.owl definitive RBC differentiation|definitive erythropoiesis|definitive red blood cell differentiation biological_process owl:Class GO:0060916 biolink:NamedThing mesenchymal cell proliferation involved in lung development The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population that contributes to the progression of the lung over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-18T11:50:17Z biological_process owl:Class GO:0006924 biolink:NamedThing activation-induced cell death of T cells A T cell apoptotic process that occurs towards the end of the expansion phase following the initial activation of mature T cells by antigen and is triggered by T cell receptor stimulation and signals transmitted via various surface-expressed members of the TNF receptor family such as Fas ligand, Fas, and TNF and the p55 and p75 TNF receptors. tmpzr1t_l9r_go_relaxed.owl AICD|antigen-driven apoptosis|activated T cell apoptosis|activation-induced cell death of T lymphocytes|activation-induced cell death of T-lymphocytes|activation-induced cell death of T-cells biological_process owl:Class GO:1905061 biolink:NamedThing negative regulation of cardioblast proliferation Any process that stops, prevents or reduces the frequency, rate or extent of cardioblast proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of cardioblast proliferation|down-regulation of cardioblast proliferation|inhibition of cardioblast proliferation|down regulation of cardioblast proliferation bc 2016-03-21T11:00:13Z biological_process owl:Class GO:0015214 biolink:NamedThing pyrimidine nucleoside transmembrane transporter activity Enables the transfer of a pyrimidine nucleoside, a pyrimidine base covalently bonded to a ribose or deoxyribose sugar from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097575 biolink:NamedThing lateral cell cortex The region directly beneath the plasma membrane of the lateral portion of the cell. tmpzr1t_l9r_go_relaxed.owl pr 2014-02-26T13:29:22Z cellular_component owl:Class GO:1904199 biolink:NamedThing positive regulation of regulation of vascular associated smooth muscle cell membrane depolarization Any process that activates or increases the frequency, rate or extent of regulation of vascular smooth muscle cell membrane depolarization. tmpzr1t_l9r_go_relaxed.owl up regulation of regulation of vascular smooth muscle cell membrane depolarization|upregulation of regulation of vascular smooth muscle cell membrane depolarization|positive regulation of regulation of vascular smooth muscle cell membrane depolarization|up-regulation of regulation of vascular smooth muscle cell membrane depolarization|activation of regulation of vascular smooth muscle cell membrane depolarization sl 2015-05-07T17:16:50Z biological_process owl:Class GO:0048726 biolink:NamedThing labrum development The process whose specific outcome is the progression of the labrum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901067 biolink:NamedThing ferulate catabolic process The chemical reactions and pathways resulting in the breakdown of ferulate. tmpzr1t_l9r_go_relaxed.owl ferulate catabolism|ferulate degradation|ferulate breakdown tt 2012-06-29T08:06:37Z biological_process owl:Class GO:0016495 biolink:NamedThing C-X3-C chemokine receptor activity Combining with a C-X3-C chemokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A C-X3-C chemokine has three amino acids between the first two cysteines of the characteristic four-cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019960 biolink:NamedThing C-X3-C chemokine binding Binding to a C-X3-C chemokine; C-X3-C chemokines have three amino acids between the first two cysteines of the characteristic four-cysteine motif. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016515 biolink:NamedThing interleukin-13 receptor activity Combining with interleukin-13 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-13R|IL-13 receptor activity molecular_function owl:Class GO:0047666 biolink:NamedThing ammonia kinase activity Catalysis of the reaction: ATP + NH(4)(+) = ADP + 3 H(+) + phosphoramidate. tmpzr1t_l9r_go_relaxed.owl phosphoramidate-adenosine diphosphate phosphotransferase activity|ATP:ammonia phosphotransferase activity|phosphoramidate-ADP-phosphotransferase activity MetaCyc:AMMONIA-KINASE-RXN|RHEA:11024|KEGG_REACTION:R00141|EC:2.7.3.8 molecular_function owl:Class GO:0102803 biolink:NamedThing thebane O-demethylase activity Catalysis of the reaction: thebaine + 2-oxoglutarate + O2 <=> oripavine + formaldehyde + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.11.32|MetaCyc:RXN-8149 molecular_function owl:Class GO:0034889 biolink:NamedThing endosulfan hemisulfate sulfatase activity Catalysis of the reaction: endosulfan hemisulfate + H2O = endosulfan monoalcohol + 2 H+ + sulfate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1384 molecular_function owl:Class GO:0004343 biolink:NamedThing glucosamine 6-phosphate N-acetyltransferase activity Catalysis of the reaction: D-glucosamine 6-phosphate + acetyl-CoA = N-acetyl-D-glucosamine 6-phosphate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl phosphoglucosamine N-acetylase activity|glucosamine-6-phosphate acetylase activity|acetyl-CoA:D-glucosamine-6-phosphate N-acetyltransferase activity|glucosamine-phosphate N-acetyltransferase activity|N-acetylglucosamine-6-phosphate synthase activity|aminodeoxyglucosephosphate acetyltransferase activity|glucosamine 6-phosphate acetylase activity|phosphoglucosamine transacetylase activity|phosphoglucosamine acetylase activity|D-glucosamine-6-P N-acetyltransferase activity KEGG_REACTION:R02058|RHEA:10292|MetaCyc:GLUCOSAMINEPNACETYLTRANS-RXN|EC:2.3.1.4|Reactome:R-HSA-449734 molecular_function owl:Class GO:0019150 biolink:NamedThing D-ribulokinase activity Catalysis of the reaction: ATP + D-ribulose = ADP + D-ribulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl D-ribulokinase (phosphorylating)|ATP:D-ribulose 5-phosphotransferase activity EC:2.7.1.47|RHEA:17601|MetaCyc:D-RIBULOKIN-RXN molecular_function owl:Class GO:0080066 biolink:NamedThing 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 3-methylthiopropyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 3-methylthiopropyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2209 dhl 2009-04-13T04:04:08Z molecular_function owl:Class GO:0102813 biolink:NamedThing UDP-D-glucose:cyanidin 3-(p-coumaroyl)-glucoside 5-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cyanidin 3-(p-coumaroyl)-glucoside = shisonin + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8205 molecular_function owl:Class GO:0033417 biolink:NamedThing CUU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CUU codon. tmpzr1t_l9r_go_relaxed.owl CTT codon-amino acid adaptor activity|leucine tRNA Note that in the standard genetic code, CTT codes for leucine. molecular_function owl:Class GO:0005137 biolink:NamedThing interleukin-5 receptor binding Binding to an interleukin-5 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-5 receptor ligand|IL-5 molecular_function owl:Class GO:0031211 biolink:NamedThing endoplasmic reticulum palmitoyltransferase complex A complex of the endoplasmic reticulum that catalyzes S-palmitoylation, the addition of palmitate (C16:0) or other long-chain fatty acids to proteins at a cysteine residue. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905961 biolink:NamedThing protein-cysteine S-palmitoyltransferase complex A protein complex which is capable of protein-cysteine S-palmitoyltransferase activity. tmpzr1t_l9r_go_relaxed.owl Palmitoyltransferase ERF2-SHR5 complex|Palmitoyltransferase ERF2/SHR5 complex An example of this is ERF2 in Saccharomyces cerevisiae (Q06551) in PMID:20851885 (inferred from direct assay) bhm 2017-02-23T13:33:15Z cellular_component owl:Class GO:0046230 biolink:NamedThing 2-aminobenzenesulfonate catabolic process The chemical reactions and pathways resulting in the breakdown of 2-aminobenzenesulfonate, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzenesulphonate catabolic process|2-aminobenzenesulfonate degradation|2-aminobenzenesulfonate breakdown|2-aminobenzenesulfonate catabolism|2-aminobenzenesulphonate catabolism biological_process owl:Class GO:0031255 biolink:NamedThing lateral part of motile cell The area of a motile cell perpendicular to the direction of movement. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034186 biolink:NamedThing apolipoprotein A-I binding Binding to apolipoprotein A-I. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903285 biolink:NamedThing positive regulation of hydrogen peroxide catabolic process Any process that activates or increases the frequency, rate or extent of hydrogen peroxide catabolic process. tmpzr1t_l9r_go_relaxed.owl activation of detoxification of H2O2|positive regulation of H2O2 catabolic process|up regulation of detoxification of H2O2|up regulation of hydrogen peroxide catabolic process|activation of hydrogen peroxide removal|positive regulation of detoxification of hydrogen peroxide|positive regulation of hydrogen peroxide breakdown|upregulation of hydrogen peroxide degradation|up regulation of hydrogen peroxide degradation|positive regulation of hydrogen peroxide scavenging|activation of H2O2 catabolic process|up regulation of hydrogen peroxide breakdown|activation of hydrogen peroxide scavenging|up regulation of detoxification of hydrogen peroxide|activation of H2O2 scavenging|up-regulation of detoxification of H2O2|positive regulation of detoxification of H2O2|up-regulation of hydrogen peroxide catabolic process|activation of hydrogen peroxide breakdown|up-regulation of hydrogen peroxide breakdown|upregulation of hydrogen peroxide breakdown|up-regulation of hydrogen peroxide catabolism|up-regulation of detoxification of hydrogen peroxide|up-regulation of hydrogen peroxide removal|upregulation of hydrogen peroxide catabolic process|up regulation of hydrogen peroxide removal|up regulation of hydrogen peroxide scavenging|activation of hydrogen peroxide degradation|activation of hydrogen peroxide catabolism|up-regulation of H2O2 scavenging|upregulation of H2O2 catabolic process|upregulation of hydrogen peroxide catabolism|up-regulation of H2O2 catabolic process|up regulation of H2O2 scavenging|up regulation of hydrogen peroxide catabolism|upregulation of hydrogen peroxide removal|up-regulation of hydrogen peroxide degradation|positive regulation of hydrogen peroxide degradation|positive regulation of hydrogen peroxide catabolism|activation of detoxification of hydrogen peroxide|positive regulation of H2O2 scavenging|up-regulation of hydrogen peroxide scavenging|upregulation of hydrogen peroxide scavenging|activation of hydrogen peroxide catabolic process|upregulation of detoxification of H2O2|positive regulation of hydrogen peroxide removal|upregulation of detoxification of hydrogen peroxide|upregulation of H2O2 scavenging|up regulation of H2O2 catabolic process bf 2014-08-11T13:28:40Z biological_process owl:Class GO:0102362 biolink:NamedThing esculetin 3-O-glucosyltransferase activity Catalysis of the reaction: esculetin + UDP-alpha-D-glucose <=> 3-O-beta-D-glucosyl-esculetin + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13472 molecular_function owl:Class GO:0016199 biolink:NamedThing axon midline choice point recognition The recognition of molecules at the central nervous system midline choice point by an axon growth cone; this choice point determines whether the growth cone will cross the midline. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015944 biolink:NamedThing formate oxidation The chemical reactions and pathways by which formate is converted to CO2. tmpzr1t_l9r_go_relaxed.owl formic acid oxidation MetaCyc:PWY-1881 biological_process owl:Class GO:0004130 biolink:NamedThing cytochrome-c peroxidase activity Catalysis of the reaction: 2 ferrocytochrome c + hydrogen peroxide = 2 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome c-551 peroxidase activity|cytochrome c peroxidase activity|ferrocytochrome-c:hydrogen-peroxide oxidoreductase activity|cytochrome peroxidase activity|mesocytochrome c peroxidase cyanide|cytochrome c-H2O oxidoreductase activity|apocytochrome c peroxidase activity|mesocytochrome c peroxidase cyanate|mesocytochrome c peroxidase azide EC:1.11.1.5|MetaCyc:CYTOCHROME-C-PEROXIDASE-RXN|RHEA:16581 molecular_function owl:Class GO:0050280 biolink:NamedThing sequoyitol dehydrogenase activity Catalysis of the reaction: 1D-5-O-methyl-myo-inositol + NAD(+) = 2D-5-O-methyl-2,3,5/4,6-pentahydroxycyclohexanone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 5-O-methyl-myo-inositol:NAD+ oxidoreductase activity RHEA:11300|MetaCyc:SEQUOYITOL-DEHYDROGENASE-RXN|KEGG_REACTION:R03497|EC:1.1.1.143 molecular_function owl:Class GO:0102389 biolink:NamedThing polyprenol reductase activity Catalysis of the reaction: NADP + a ditrans,polycis-dolichol = NADPH + H+ + a di-trans, poly-cis-polyprenol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13604|RHEA:34279|EC:1.3.1.94 molecular_function owl:Class GO:0097598 biolink:NamedThing sperm cytoplasmic droplet A small amount of cytoplasm surrounded by a cell membrane that is generally retained in spermatozoa after spermiogenesis, when the majority of the cytoplasm is phagocytosed by Sertoli cells to produce what are called residual bodies. Initially, the droplet is located at the neck just behind the head of an elongated spermatid. During epididymal transit, the cytoplasmic droplet migrates caudally to the annulus at the end of the midpiece; the exact position and time varies by species. The cytoplasmic droplet consists of lipids, lipoproteins, RNAs, a variety of hydrolytic enzymes, receptors, ion channels, and Golgi-derived vesicles. The droplet may be involved in regulatory volume loss (RVD) at ejaculation, and in most species, though not in humans, the cytoplasmic droplet is lost at ejaculation. Note that the cytoplasmic droplet is distinct from 'excessive residual cytoplasm' that sometimes remains in epididymal spermatozoa, particularly when spermiogenesis has been disrupted. tmpzr1t_l9r_go_relaxed.owl sperm residual cytoplasm pr 2014-04-10T14:03:30Z cellular_component owl:Class GO:0071070 biolink:NamedThing alpha4-beta1 integrin-thrombospondin-2 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-2. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-THBS2 complex mah 2009-11-03T04:05:56Z cellular_component owl:Class GO:0017014 biolink:NamedThing protein nitrosylation The covalent addition of a nitric oxide group to an amino acid within a protein. tmpzr1t_l9r_go_relaxed.owl protein amino acid nitrosylation biological_process owl:Class GO:0060364 biolink:NamedThing frontal suture morphogenesis The process in which the frontal suture is generated and organized. tmpzr1t_l9r_go_relaxed.owl interfrontal suture morphogenesis biological_process owl:Class GO:0098569 biolink:NamedThing internal side of mycolate outer membrane The side of the mycolate outer membrane that faces the cell wall peptidoglycan. It is rich in long-chain mycolic acids (hydroxylated branched-chain fatty acids) that are covalently linked to the cell wall peptidoglycan via an arabinogalactan network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007601 biolink:NamedThing visual perception The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image. tmpzr1t_l9r_go_relaxed.owl vision|sense of sight|sensory visual perception Wikipedia:Visual_perception biological_process owl:Class GO:0080184 biolink:NamedThing response to phenylpropanoid Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a phenylpropanoid stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. A phenylpropanoid is any of secondary metabolites with structures based on a phenylpropane skeleton. The class includes phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules. Phenylpropanoids are also precursors of lignin. tmpzr1t_l9r_go_relaxed.owl dhl 2011-08-10T04:28:21Z biological_process owl:Class GO:0035088 biolink:NamedThing establishment or maintenance of apical/basal cell polarity Any cellular process that results in the specification, formation or maintenance polarization of a cell's architecture along its apical/basal axis so that the apical and basal regions of the cell have different membrane, extracellular matrix and sub-membrane cellular components. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061761 biolink:NamedThing alpha-latrotoxin receptor binding Binding to an alpha-latrotoxin receptor. tmpzr1t_l9r_go_relaxed.owl latrophilin binding|lasso receptor binding dph 2016-04-13T10:46:42Z molecular_function owl:Class GO:0071416 biolink:NamedThing cellular response to tropane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tropane stimulus. Tropane is a nitrogenous bicyclic organic compound mainly known for a group of alkaloids derived from it (called tropane alkaloids), which include, among others, atropine and cocaine. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T03:12:24Z biological_process owl:Class GO:0002155 biolink:NamedThing regulation of thyroid hormone mediated signaling pathway Any process that modulates the frequency, rate or extent of a thyroid hormone mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of thyroid hormone mediated signalling pathway hjd 2009-11-19T12:37:46Z biological_process owl:Class GO:1990203 biolink:NamedThing MdtBC Complex A protein complex containing two transmembrane subunits; a MdtB dimer and one unit of MdtC. Capable of exporting substrates across the cell membrane. Involved in conferring antibiotic resistance of Gram-negative bacteria by transporting drugs across the membrane. tmpzr1t_l9r_go_relaxed.owl multidrug efflux pump MdtBC bhm 2013-10-04T21:22:18Z cellular_component owl:Class GO:0047378 biolink:NamedThing acetylalkylglycerol acetylhydrolase activity Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycerol + H(2)O = 1-alkyl-sn-glycerol + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl alkylacetylglycerol acetylhydrolase activity|2-acetyl-1-alkyl-sn-glycerol acetylhydrolase activity EC:3.1.1.71|KEGG_REACTION:R04043|RHEA:11552|MetaCyc:3.1.1.71-RXN molecular_function owl:Class GO:0099069 biolink:NamedThing synaptic vesicle tethering involved in synaptic vesicle exocytosis The initial, indirect interaction between a synaptic vesicle membrane and a the preseynaptic membrane active zone. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. This process is distinct from and prior to synaptic vesicle priming and fusion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019133 biolink:NamedThing choline monooxygenase activity Catalysis of the reaction: choline + 2 reduced ferredoxin + O2 + 2 H+ = betaine aldehyde hydrate + 2 oxidized ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl choline,reduced-ferredoxin:oxygen oxidoreductase activity RHEA:17769|MetaCyc:RXN1F-357|EC:1.14.15.7 molecular_function owl:Class GO:0072168 biolink:NamedThing specification of anterior mesonephric tubule identity The process in which the tubules of the anterior mesonephros acquire their identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:52:36Z biological_process owl:Class GO:0034068 biolink:NamedThing aminoglycoside nucleotidyltransferase activity Catalysis of the reaction: nucleoside triphosphate + aminoglycoside = diphosphate + nucleotidylaminoglycoside. tmpzr1t_l9r_go_relaxed.owl aminoglycoside adenylyltransferase activity|streptomycin-spectinomycin adenylyltransferase activity|streptomycin adenylate synthetase activity|streptomycin adenylyltransferase activity|streptomycin adenyltransferase activity|streptomycin adenylylase activity molecular_function owl:Class GO:0039685 biolink:NamedThing rolling hairpin viral DNA replication A viral DNA replication process where a 3' hairpin structure in the viral single-stranded DNA (ssDNA) template serves as a primer for host enzymes to synthesize DNA. tmpzr1t_l9r_go_relaxed.owl ssDNA rolling hairpin viral DNA replication VZ:2656 bf 2013-10-17T14:33:55Z biological_process owl:Class GO:0050700 biolink:NamedThing CARD domain binding Binding to a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102679 biolink:NamedThing (5alpha)-campestan-3-one hydroxylase activity Catalysis of the reaction: H+ + (5alpha)-campestan-3-one + O2 + NADPH <=> (5alpha,22S,24R)-22-hydroxyergostan-3-one + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4230 molecular_function owl:Class GO:0071055 biolink:NamedThing alpha9-beta1 integrin-ADAM9 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM9. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM9 complex mah 2009-11-03T03:59:24Z cellular_component owl:Class GO:1903193 biolink:NamedThing sesquarterpene biosynthetic process The chemical reactions and pathways resulting in the formation of sesquarterpene. tmpzr1t_l9r_go_relaxed.owl sesquarterpene formation|sesquarterpene synthesis|sesquarterpene anabolism|sesquarterpene biosynthesis tt 2014-07-16T17:04:53Z biological_process owl:Class GO:0008217 biolink:NamedThing regulation of blood pressure Any process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure. tmpzr1t_l9r_go_relaxed.owl control of blood pressure|blood pressure regulation|blood pressure homeostasis Wikipedia:Blood_pressure#Regulation biological_process owl:Class GO:0102123 biolink:NamedThing gibberellin A4 16alpha,17 epoxidase activity Catalysis of the reaction: gibberellin A4 + O2 + H+ + NAD(P)H <=> 16alpha,17-epoxy gibberellin A4 + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11385 molecular_function owl:Class GO:0018813 biolink:NamedThing trans-o-hydroxybenzylidenepyruvate hydratase-aldolase activity Catalysis of the reaction: 2-oxo-3-enoate-4-benzenoid + H2O = pyruvate + benzaldehyde derivative. Substrates are (3E)-4-(5-amino-2-hydroxy-phenyl)-2-oxo-but-3-ene-1-oic-acid (forms 5-aminosalicylaldehyde) and trans-o-hydroxybenzylidenepyruvate (forms salicylaldehyde). tmpzr1t_l9r_go_relaxed.owl EC:4.1.2.45|RHEA:27389|UM-BBD_enzymeID:e0257 molecular_function owl:Class GO:1903713 biolink:NamedThing asparagine transmembrane transport The directed movement of asparagine across a membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-12-06T08:17:55Z biological_process owl:Class GO:0050018 biolink:NamedThing L-amino-acid dehydrogenase activity Catalysis of the reaction: an L-amino acid + H2O + NAD+ = a 2-oxo acid + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl L-amino-acid:NAD+ oxidoreductase (deaminating) MetaCyc:L-AMINO-ACID-DEHYDROGENASE-RXN|EC:1.4.1.5|RHEA:10396 molecular_function owl:Class GO:0071890 biolink:NamedThing bicarbonate binding Binding to bicarbonate ions (CHO3-). tmpzr1t_l9r_go_relaxed.owl hydrogencarbonate binding|CHO3- ion binding binding mah 2010-09-14T01:47:43Z molecular_function owl:Class GO:0047347 biolink:NamedThing aldose-1-phosphate nucleotidyltransferase activity Catalysis of the reaction: aldose 1-phosphate + NDP = phosphate + NDP-aldose. tmpzr1t_l9r_go_relaxed.owl NDP:aldose-1-phosphate nucleotidyltransferase activity|nucleoside diphosphosugar phosphorylase activity|glucose 1-phosphate inosityltransferase activity|sugar phosphate nucleotidyltransferase activity|sugar-1-phosphate nucleotidyltransferase activity|sugar nucleotide phosphorylase activity|NDPaldose phosphorylase activity|nucleoside diphosphate sugar:orthophosphate nucleotidyltransferase activity|NDP:alpha-D-aldose-1-phosphate nucleotidyltransferase activity|NDP sugar phosphorylase activity|NDP-aldose phosphorylase activity|NDP-sugar phosphorylase activity EC:2.7.7.37|MetaCyc:2.7.7.37-RXN molecular_function owl:Class GO:0140339 biolink:NamedThing phosphatidylglycerol transfer activity Directly binding to phosphatidylglycerol and delivering it either to an acceptor molecule or to a specific location. tmpzr1t_l9r_go_relaxed.owl phosphatidylglycerol carrier activity pg 2019-05-16T11:34:45Z molecular_function owl:Class GO:1905810 biolink:NamedThing regulation of excitatory synapse pruning Any process that modulates the frequency, rate or extent of excitatory synapse pruning. tmpzr1t_l9r_go_relaxed.owl regulation of synapse clearance|regulation of synapse removal|regulation of synapse elimination|regulation of synapse disassembly tb 2017-01-12T02:38:27Z biological_process owl:Class GO:1905806 biolink:NamedThing regulation of synapse pruning Any process that modulates the frequency, rate or extent of synapse pruning. tmpzr1t_l9r_go_relaxed.owl regulation of synapse clearance|regulation of synapse elimination|regulation of synapse removal|regulation of synapse disassembly tb 2017-01-11T22:03:15Z biological_process owl:Class GO:1904225 biolink:NamedThing positive regulation of glucuronosyltransferase activity Any process that activates or increases the frequency, rate or extent of glucuronosyltransferase activity. tmpzr1t_l9r_go_relaxed.owl activation of 1-naphthol-UDP-glucuronosyltransferase activity|activation of bilirubin uridine diphosphoglucuronyltransferase activity|activation of UDPGA transferase activity|positive regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|activation of estrone UDPglucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|activation of UDP glucuronate-estriol glucuronosyltransferase activity|upregulation of uridine diphosphoglucuronyltransferase activity|activation of 4-nitrophenol UDP-glucuronyltransferase activity|up regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|positive regulation of bilirubin uridine diphosphoglucuronyltransferase activity|up regulation of estrone UDPglucuronosyltransferase activity|upregulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|upregulation of estriol UDPglucuronosyltransferase activity|upregulation of UDPGT activity|up regulation of UDP glucuronyltransferase activity|up-regulation of PNP-UDPGT|upregulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|up regulation of pnp-UDPGT activity|upregulation of PNP-UDPGT|activation of UDPGT activity|up regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|up regulation of UDPGA-glucuronyltransferase activity|up regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|activation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|up regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|up regulation of 17-OH steroid UDPGT activity|activation of p-phenylphenol glucuronyltransferase activity|up regulation of UDP glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronyltransferase activity|activation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|upregulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|positive regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|activation of UDP glucuronic acid transferase activity|positive regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|up regulation of p-nitrophenylglucuronosyltransferase activity|up regulation of phenyl-UDP-glucuronosyltransferase activity|positive regulation of UDPGT activity|upregulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|up-regulation of p-nitrophenol UDP-glucuronyltransferase activity|up-regulation of bilirubin glucuronyltransferase activity|up regulation of 3-OH androgenic UDPGT activity|positive regulation of p-nitrophenol UDP-glucuronosyltransferase activity|up regulation of uridine diphosphate glucuronyltransferase activity|up regulation of uridine diphosphoglucuronyltransferase activity|upregulation of UDP glucuronosyltransferase activity|up-regulation of uridine 5'-diphosphoglucuronyltransferase activity|positive regulation of uridine 5'-diphosphoglucuronyltransferase activity|upregulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|up-regulation of p-nitrophenylglucuronosyltransferase activity|up-regulation of 3-OH androgenic UDPGT activity|activation of ciramadol UDP-glucuronyltransferase activity|upregulation of bilirubin UDP-glucuronosyltransferase activity|up regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|activation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|up-regulation of UDP glucuronate-estriol glucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|activation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|upregulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of p-nitrophenol UDP-glucuronosyltransferase activity|up regulation of bilirubin UDPGT activity|up regulation of UDP-glucuronyltransferase activity|upregulation of p-phenylphenol glucuronyltransferase activity|activation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|positive regulation of 4-nitrophenol UDP-glucuronyltransferase activity|up-regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|upregulation of UDPGA-glucuronyltransferase activity|upregulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|positive regulation of UDP glucuronate-estriol glucuronosyltransferase activity|up-regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|activation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|upregulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|upregulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|upregulation of 4-nitrophenol UDPGT activity|up-regulation of GT activity|positive regulation of p-nitrophenol UDP-glucuronyltransferase activity|up-regulation of UDP-glucuronosyltransferase activity|activation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|up-regulation of UDPGA transferase activity|positive regulation of estriol UDPglucuronosyltransferase activity|upregulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|activation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|up-regulation of UDP-glucuronyltransferase activity|positive regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|positive regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|up-regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|activation of uridine diphosphoglucuronyltransferase activity|up-regulation of bilirubin uridine diphosphoglucuronyltransferase activity|up-regulation of 17-OH steroid UDPGT activity|up-regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|activation of 17-OH steroid UDPGT activity|activation of bilirubin UDP-glucuronosyltransferase activity|up regulation of 4-nitrophenol UDPGT activity|upregulation of bilirubin glucuronyltransferase activity|activation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|up-regulation of UDPGT activity|activation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|up regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|positive regulation of 3-OH androgenic UDPGT activity|up regulation of bilirubin monoglucuronide glucuronyltransferase activity|positive regulation of ciramadol UDP-glucuronyltransferase activity|positive regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|positive regulation of p-nitrophenylglucuronosyltransferase activity|activation of bilirubin UDPGT activity|up-regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|up regulation of UDPGT activity|up-regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|up-regulation of UDP glucuronosyltransferase activity|activation of UDPGA-glucuronyltransferase activity|activation of estriol UDPglucuronosyltransferase activity|upregulation of phenyl-UDP-glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronate-estriol 16alpha-glucuronosyltransferase activity|up regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|upregulation of uridine diphosphoglucuronosyltransferase activity|up-regulation of 1-naphthol glucuronyltransferase activity|positive regulation of bilirubin UDP-glucuronosyltransferase activity|upregulation of p-nitrophenylglucuronosyltransferase activity|positive regulation of bilirubin glucuronyltransferase activity|activation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|activation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|up regulation of 1-naphthol-UDP-glucuronosyltransferase activity|activation of uridine diphosphate glucuronyltransferase activity|activation of UDP glucuronosyltransferase activity|up regulation of p-nitrophenol UDP-glucuronyltransferase activity|up-regulation of bilirubin monoglucuronide glucuronyltransferase activity|positive regulation of pnp-UDPGT activity|activation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|upregulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|up regulation of uridine 5'-diphosphoglucuronyltransferase activity|up-regulation of uridine diphosphate glucuronyltransferase activity|upregulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of UDP glucuronic acid transferase activity|up regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of 4-nitrophenol UDP-glucuronyltransferase activity|upregulation of bilirubin monoglucuronide glucuronyltransferase activity|upregulation of bilirubin uridine diphosphoglucuronyltransferase activity|up-regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|up regulation of bilirubin glucuronyltransferase activity|activation of morphine glucuronyltransferase activity|positive regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|activation of 1-naphthol glucuronyltransferase activity|positive regulation of bilirubin UDPGT activity|up-regulation of UDP glucuronic acid transferase activity|positive regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|upregulation of UDPGA transferase activity|up regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|upregulation of 4-nitrophenol UDP-glucuronyltransferase activity|positive regulation of UDPGA transferase activity|activation of uridine 5'-diphosphoglucuronyltransferase activity|activation of 3-OH androgenic UDPGT activity|upregulation of p-nitrophenol UDP-glucuronosyltransferase activity|positive regulation of bilirubin monoglucuronide glucuronyltransferase activity|upregulation of UDP glucuronyltransferase activity|up-regulation of estrone UDPglucuronosyltransferase activity|activation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|activation of GT activity|upregulation of 3-OH androgenic UDPGT activity|up-regulation of phenyl-UDP-glucuronosyltransferase activity|upregulation of UDP glucuronic acid transferase activity|up-regulation of 17-beta-hydroxysteroid UDP-glucuronosyltransferase activity|up-regulation of morphine glucuronyltransferase activity|positive regulation of UDP glucuronic acid transferase activity|activation of p-hydroxybiphenyl UDP glucuronyltransferase activity|up regulation of UDP-glucuronate beta-D-glucuronosyltransferase (acceptor-unspecific)|up regulation of 3-alpha-hydroxysteroid UDP-glucuronosyltransferase activity|activation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|activation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|up regulation of uridine diphosphoglucuronosyltransferase activity|up-regulation of glucuronosyltransferase activity|upregulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of glucuronosyltransferase activity|up regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|up regulation of ciramadol UDP-glucuronyltransferase activity|upregulation of GT activity|activation of UDP-glucuronate-bilirubin glucuronyltransferase activity|upregulation of uridine diphosphate glucuronyltransferase activity|activation of glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|positive regulation of UDP glucuronyltransferase activity|positive regulation of 17-OH steroid UDPGT activity|positive regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of UDP glucuronate-estriol glucuronosyltransferase activity|activation of bilirubin glucuronyltransferase activity|upregulation of 17-OH steroid UDPGT activity|up-regulation of estriol UDPglucuronosyltransferase activity|activation of UDP-glucuronyltransferase activity|positive regulation of morphine glucuronyltransferase activity|up-regulation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|positive regulation of PNP-UDPGT|activation of p-nitrophenol UDP-glucuronyltransferase activity|upregulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|upregulation of bilirubin UDPGT activity|upregulation of UDP glucuronate-estriol glucuronosyltransferase activity|upregulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|positive regulation of uridine diphosphoglucuronosyltransferase activity|activation of 4-nitrophenol UDPGT activity|up-regulation of p-phenylphenol glucuronyltransferase activity|up regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|positive regulation of p-phenylphenol glucuronyltransferase activity|up regulation of bilirubin uridine diphosphoglucuronyltransferase activity|up-regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|activation of phenyl-UDP-glucuronosyltransferase activity|up-regulation of 4-nitrophenol UDP-glucuronyltransferase activity|upregulation of morphine glucuronyltransferase activity|upregulation of glucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronate-estriol glucuronosyltransferase activity|up regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|activation of UDP-glucuronosyltransferase activity|up regulation of UDP-glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronosyltransferase activity|positive regulation of UDPGA-glucuronyltransferase activity|upregulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|up regulation of 1-naphthol glucuronyltransferase activity|up regulation of morphine glucuronyltransferase activity|up-regulation of uridine diphosphoglucuronate-estriol 16-alpha-glucuronosyltransferase activity|up regulation of p-phenylphenol glucuronyltransferase activity|activation of bilirubin monoglucuronide glucuronyltransferase activity|up regulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|up-regulation of pnp-UDPGT activity|up-regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|up regulation of UDP-glucuronate-bilirubin glucuronyltransferase activity|upregulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|upregulation of uridine 5'-diphosphoglucuronyltransferase activity|up regulation of GT activity|positive regulation of 4-methylumbelliferone UDP-glucuronosyltransferase activity|upregulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|activation of p-nitrophenylglucuronosyltransferase activity|upregulation of 1-naphthol glucuronyltransferase activity|upregulation of p-nitrophenol UDP-glucuronyltransferase activity|positive regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|up-regulation of 17beta-hydroxysteroid UDP-glucuronosyltransferase activity|up regulation of estriol UDPglucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|positive regulation of uridine diphosphoglucuronyltransferase activity|activation of uridine diphosphoglucuronate-bilirubin glucuronosyltransferase activity|positive regulation of UDP-glucuronyltransferase activity|up regulation of PNP-UDPGT|positive regulation of UDP-glucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|activation of PNP-UDPGT|up-regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|up-regulation of ciramadol UDP-glucuronyltransferase activity|upregulation of uridine diphosphoglucuronate-1,2-diacylglycerol glucuronosyltransferase activity|positive regulation of UDP-glucuronosyltransferase activity|up-regulation of UDPGA-glucuronyltransferase activity|up-regulation of bilirubin UDP-glucuronosyltransferase activity|up regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|activation of pnp-UDPGT activity|upregulation of estrone UDPglucuronosyltransferase activity|up-regulation of p-nitrophenol UDP-glucuronosyltransferase activity|up regulation of UDPGA transferase activity|upregulation of 1-naphthol-UDP-glucuronosyltransferase activity|positive regulation of UDPglucuronate beta-D-glucuronosyltransferase (acceptor-unspecific) activity|activation of UDP glucuronyltransferase activity|positive regulation of 1-naphthol-UDP-glucuronosyltransferase activity|positive regulation of p-hydroxybiphenyl UDP glucuronyltransferase activity|positive regulation of UDP glucuronate-estradiol-glucuronosyltransferase activity|activation of p-nitrophenol UDP-glucuronosyltransferase activity|up-regulation of uridine diphosphoglucuronate-4-hydroxybiphenyl glucuronosyltransferase activity|up regulation of bilirubin UDP-glucuronosyltransferase activity|upregulation of pnp-UDPGT activity|upregulation of ciramadol UDP-glucuronyltransferase activity|activation of uridine diphosphoglucuronosyltransferase activity|positive regulation of uridine diphosphate glucuronyltransferase activity|up regulation of uridine diphosphoglucuronate-bilirubin glucuronoside glucuronosyltransferase activity|up-regulation of 4-nitrophenol UDPGT activity|positive regulation of phenyl-UDP-glucuronosyltransferase activity|positive regulation of 1-naphthol glucuronyltransferase activity|upregulation of uridine diphosphoglucuronate-estradiol glucuronosyltransferase activity|up regulation of 4-hydroxybiphenyl UDP-glucuronosyltransferase activity|upregulation of UDP-glucuronyltransferase activity|up-regulation of 3alpha-hydroxysteroid UDP-glucuronosyltransferase activity|up-regulation of 1-naphthol-UDP-glucuronosyltransferase activity|positive regulation of GT activity|positive regulation of 4-nitrophenol UDPGT activity|positive regulation of estrone UDPglucuronosyltransferase activity|positive regulation of UDP glucuronosyltransferase activity|up-regulation of bilirubin UDPGT activity|activation of UDP glucuronate-estradiol-glucuronosyltransferase activity|up-regulation of UDP glucuronyltransferase activity|upregulation of UDP-glucuronosyltransferase activity i2 UDP-glucuronosyltransferase splice species alter glucuronidation activity of i1 UDP-glucuronosyltransferase splice species rl 2015-05-15T08:44:32Z biological_process owl:Class GO:0010792 biolink:NamedThing DNA double-strand break processing involved in repair via single-strand annealing The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via single-strand annealing. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016796 biolink:NamedThing exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5' phosphomonoesters EC:3.1.15.- Note that this activity can catalyze cleavage of DNA or RNA. molecular_function owl:Class GO:0018827 biolink:NamedThing 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrochlorinase activity Catalysis of the reaction: 1-chloro-2,2-bis(4-chlorophenyl)ethane = HCl + unsym-bis(4-chlorophenyl)ethene. 1-chloro-2,2-bis(4-chlorophenyl)ethane is also known as DDMS; unsym-bis(4-chlorophenyl)ethene is also known as DDNU. tmpzr1t_l9r_go_relaxed.owl DDMS dehydrochlorinase activity EC:4.5.1.-|UM-BBD_reactionID:r0515 molecular_function owl:Class GO:0004056 biolink:NamedThing argininosuccinate lyase activity Catalysis of the reaction: N-(L-arginino)succinate = fumarate + L-arginine. tmpzr1t_l9r_go_relaxed.owl omega-N-(L-arginino)succinate arginine-lyase activity|2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)|argininosuccinic acid lyase activity|N-(L-argininosuccinate) arginine-lyase activity|2-(omega-N-L-arginino)succinate arginine-lyase (fumarate-forming)|arginosuccinase activity|arginine-succinate lyase activity Reactome:R-HSA-70573|RHEA:24020|MetaCyc:ARGSUCCINLYA-RXN|EC:4.3.2.1 molecular_function owl:Class GO:0030011 biolink:NamedThing maintenance of cell polarity The maintenance of established anisotropic intracellular organization or cell growth patterns. tmpzr1t_l9r_go_relaxed.owl GO:0030469|GO:0030013 biological_process owl:Class GO:0099009 biolink:NamedThing viral genome circularization The circularization of a viral genome following infection of a host cell. This is common amongst bacterial viruses to protect the viral genome ends from nucleases, to convert the linear genome to an integrative precursor or to give rise to the replicative form of the genome. It can be mediated by covalent closure of the DNA sticky ends, recombinaison between redundant terminal sequences or via the binding of a protein at the viral DNA extremities. tmpzr1t_l9r_go_relaxed.owl VZ:3968 biological_process owl:Class GO:0022856 biolink:NamedThing protein-N(PI)-phosphohistidine-sorbitol phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sorbitol(out) = protein histidine + sorbitol phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl sorbitol PTS transporter activity molecular_function owl:Class GO:0008345 biolink:NamedThing larval locomotory behavior Locomotory behavior in a larval (immature) organism. tmpzr1t_l9r_go_relaxed.owl larval locomotory behaviour See also the biological process term 'locomotory behavior ; GO:0007626'. biological_process owl:Class GO:0071018 biolink:NamedThing U12-type catalytic step 2 spliceosome A spliceosomal complex that contains the U12, U5 and U6atac snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U12, U5 and U6atac snRNPs. tmpzr1t_l9r_go_relaxed.owl AT-AC catalytic step 2 spliceosome|minor catalytic step 2 spliceosome|mammalian U12-type spliceosomal complex C1|yeast U12-type spliceosomal complex A2-2|mammalian U12-type spliceosomal complex C mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1900759 biolink:NamedThing positive regulation of D-amino-acid oxidase activity Any process that activates or increases the frequency, rate or extent of D-amino-acid oxidase activity. tmpzr1t_l9r_go_relaxed.owl activation of D-amino-acid oxidase activity|positive regulation of D-amino-acid:oxygen oxidoreductase (deaminating)|up-regulation of D-amino-acid oxidase activity|up-regulation of new yellow enzyme|upregulation of L-amino acid:O2 oxidoreductase activity|upregulation of new yellow enzyme|activation of L-amino acid:O2 oxidoreductase activity|up-regulation of D-amino-acid:oxygen oxidoreductase (deaminating)|up regulation of new yellow enzyme|positive regulation of L-amino acid:O2 oxidoreductase activity|upregulation of D-amino-acid oxidase activity|activation of new yellow enzyme|up regulation of D-amino-acid:oxygen oxidoreductase (deaminating)|up-regulation of L-amino acid:O2 oxidoreductase activity|upregulation of D-amino-acid:oxygen oxidoreductase (deaminating)|activation of D-amino-acid:oxygen oxidoreductase (deaminating)|positive regulation of new yellow enzyme|up regulation of D-amino-acid oxidase activity|up regulation of L-amino acid:O2 oxidoreductase activity pm 2012-05-31T11:24:14Z biological_process owl:Class GO:0019163 biolink:NamedThing pyridoxamine-phosphate transaminase activity Catalysis of the reaction: pyridoxamine 5'-phosphate + 2-oxoglutarate = pyridoxal 5'-phosphate + D-glutamate. tmpzr1t_l9r_go_relaxed.owl pyridoxamine 5'-phosphate transaminase activity|pyridoxamine phosphate aminotransferase activity|pyridoxamine-phosphate aminotransferase activity|pyridoxamine-5'-phosphate:2-oxoglutarate aminotransferase (D-glutamate-forming)|pyridoxamine 5'-phosphate-alpha-ketoglutarate transaminase activity RHEA:15877|MetaCyc:PYRDAMPTRANS-RXN|EC:2.6.1.54 molecular_function owl:Class GO:0110034 biolink:NamedThing negative regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of adenylate cyclase-activating glucose-activated G-protein coupled receptor signaling pathway kmv 2017-07-17T20:35:55Z biological_process owl:Class GO:0061059 biolink:NamedThing positive regulation of peptidoglycan recognition protein signaling pathway Any process that increases the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of peptidoglycan recognition protein signalling pathway dph 2010-03-02T12:37:44Z biological_process owl:Class GO:0008814 biolink:NamedThing citrate CoA-transferase activity Catalysis of the reaction: acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:citrate CoA-transferase activity EC:2.8.3.10|MetaCyc:CITTRANS-RXN|RHEA:19405 molecular_function owl:Class GO:1904586 biolink:NamedThing cellular response to putrescine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a putrescine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to 1,4-Butanediamine|cellular response to 1,4-Diaminobutane|cellular response to tetramethylenediamine sl 2015-08-20T14:35:45Z biological_process owl:Class GO:0043707 biolink:NamedThing cell adhesion involved in single-species biofilm formation in or on host organism The attachment of a cell to either a host cell or a microbial cell of the same species, or to an underlying host substrate, such as the extracellular matrix, via cell adhesion molecules, occurring during the formation of a biofilm in or on a host species. tmpzr1t_l9r_go_relaxed.owl cell adhesion during single-species biofilm formation in or on host organism biological_process owl:Class GO:0099541 biolink:NamedThing trans-synaptic signaling by lipid Cell-cell signaling from post to pre-synapse, across the synaptic cleft, mediated by a lipid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901561 biolink:NamedThing response to benomyl Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benomyl stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-02T15:32:33Z biological_process owl:Class GO:0044730 biolink:NamedThing bone sialoprotein binding Binding to a bone sialoprotein, an extracellular matrix glycoprotein found on the surface of bones and dentin. tmpzr1t_l9r_go_relaxed.owl bone sialoprotein II binding InterPro:IPR008412 jl 2012-11-06T13:05:56Z molecular_function owl:Class GO:0090612 biolink:NamedThing cAMP deaminase activity Catalysis of the reaction: cyclic adenosine monophosphate + H2O = cyclic inosine monophosphate + NH3. tmpzr1t_l9r_go_relaxed.owl cyclic adenosine monophosphate deaminase activity EC:3.5.4.46|RHEA:22908 tb 2014-10-23T15:46:42Z molecular_function owl:Class GO:0047812 biolink:NamedThing D-amino-acid N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + a D-amino acid = CoA + an N-acetyl-D-amino-acid. tmpzr1t_l9r_go_relaxed.owl D-amino acid-alpha-N-acetyltransferase activity|acetyl-CoA:D-amino-acid N-acetyltransferase activity|D-amino acid acetyltransferase activity RHEA:20704|MetaCyc:D-AMINO-ACID-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.36 molecular_function owl:Class GO:0034429 biolink:NamedThing tectobulbar tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052020 biolink:NamedThing modification by symbiont of host cell wall The process in which an organism effects a change in the structure or function of the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism of host cell wall by organism biological_process owl:Class GO:0071392 biolink:NamedThing cellular response to estradiol stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen. tmpzr1t_l9r_go_relaxed.owl cellular response to E2 stimulus mah 2009-12-11T04:10:31Z biological_process owl:Class GO:0008754 biolink:NamedThing O antigen ligase activity Catalysis of the reaction: Lipid A-core + colanic acid = MLPS. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5294 molecular_function owl:Class GO:0090408 biolink:NamedThing phloem nitrate loading The process of loading nitrate into the sieve tube or companion cell of the phloem for long distance transport from source to sink. tmpzr1t_l9r_go_relaxed.owl tb 2011-06-01T10:06:21Z biological_process owl:Class GO:0097675 biolink:NamedThing SCF-Hrt3/Pof7 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Hrt3 in S. cerevisiae (Pof7 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:31:14Z cellular_component owl:Class GO:0051743 biolink:NamedThing red chlorophyll catabolite reductase activity Catalysis of the reaction: red chlorophyll catabolite + reduced ferredoxin + 2 H+ = primary fluorescent catabolite + oxidized ferredoxin. This reaction is the reduction of the C20/C1 double bond in the pyrrole system of red chlorophyll catabolite (RCC) to a colorless tetrapyrrole (pFCC) with a strong blue fluorescence. tmpzr1t_l9r_go_relaxed.owl RCC reductase activity MetaCyc:RXN-7741|RHEA:24752 molecular_function owl:Class GO:1900210 biolink:NamedThing positive regulation of cardiolipin metabolic process Any process that activates or increases the frequency, rate or extent of cardiolipin metabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiolipin metabolism|upregulation of cardiolipin metabolic process|activation of diphosphatidylglycerol metabolism|activation of cardiolipin metabolism|positive regulation of diphosphatidylglycerol metabolism|up-regulation of cardiolipin metabolic process|positive regulation of cardiolipin metabolism|activation of cardiolipin metabolic process|up regulation of cardiolipin metabolism|up-regulation of diphosphatidylglycerol metabolism|upregulation of cardiolipin metabolism|positive regulation of diphosphatidylglycerol metabolic process|up regulation of cardiolipin metabolic process|up regulation of diphosphatidylglycerol metabolism|up-regulation of diphosphatidylglycerol metabolic process|upregulation of diphosphatidylglycerol metabolic process|up regulation of diphosphatidylglycerol metabolic process|activation of diphosphatidylglycerol metabolic process|upregulation of diphosphatidylglycerol metabolism jl 2012-03-22T10:43:51Z biological_process owl:Class GO:0050218 biolink:NamedThing propionate-CoA ligase activity Catalysis of the reaction: ATP + propanoate + CoA = AMP + diphosphate + propanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA synthetase activity|propanoate:CoA ligase (AMP-forming) RHEA:20373|MetaCyc:PROPIONATE--COA-LIGASE-RXN|EC:6.2.1.17 molecular_function owl:Class GO:0071356 biolink:NamedThing cellular response to tumor necrosis factor Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to TNF mah 2009-12-11T02:51:37Z biological_process owl:Class GO:0042905 biolink:NamedThing 9-cis-retinoic acid metabolic process The chemical reactions and pathways involving 9-cis-retinoic acid, a metabolically active vitamin A derivative. tmpzr1t_l9r_go_relaxed.owl 9-cis-retinoic acid metabolism biological_process owl:Class GO:0047058 biolink:NamedThing vitamin-K-epoxide reductase (warfarin-insensitive) activity Catalysis of the reaction: 3-hydroxy-2-methyl-3-phytyl-2,3-dihydronaphthoquinone + oxidized dithiothreitol + H2O = 2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone + 1,4-dithiothreitol. tmpzr1t_l9r_go_relaxed.owl vitamin K 2,3-epoxide reductase activity https://github.com/geneontology/go-ontology/issues/21412 MetaCyc:1.1.4.2-RXN|EC:1.17.4.5|RHEA:21560 Formerly EC:1.1.4.2. molecular_function owl:Class GO:0010385 biolink:NamedThing double-stranded methylated DNA binding Binding to double-stranded methylated DNA. Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032184 biolink:NamedThing SUMO polymer binding Binding to a polymer of the small ubiquitin-like protein SUMO. tmpzr1t_l9r_go_relaxed.owl Smt3 polymer binding molecular_function owl:Class GO:0032183 biolink:NamedThing SUMO binding Binding to the small ubiquitin-like protein SUMO. tmpzr1t_l9r_go_relaxed.owl Smt3 binding|Smt3 monomer binding molecular_function owl:Class GO:0015471 biolink:NamedThing nucleoside-specific channel forming porin activity Enables the energy independent passage of nucleoside, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043237 biolink:NamedThing laminin-1 binding Binding to laminin-1, a glycoprotein trimer with the subunit composition alpha1, beta1, gamma1. tmpzr1t_l9r_go_relaxed.owl laminin-111 binding molecular_function owl:Class GO:0008883 biolink:NamedThing glutamyl-tRNA reductase activity Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-glutamate-semialdehyde: NADP+ oxidoreductase (L-glutamyl-tRNAGlu-forming) KEGG_REACTION:R04109|MetaCyc:GLUTRNAREDUCT-RXN|RHEA:12344|EC:1.2.1.70 molecular_function owl:Class GO:0010170 biolink:NamedThing glucose-1-phosphate adenylyltransferase complex Complex that catalyzes the synthesis of ADP-glucose and pyrophosphate from glucose-1-phosphate and ATP. In plants, the complex is a heterotetramer composed of two types of subunits (small and large). In bacteria, the enzyme complex is composed of four identical subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034039 biolink:NamedThing 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity Catalysis of the removal of 8-oxo-7,8-dihydroguanine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. tmpzr1t_l9r_go_relaxed.owl 8-oxoG DNA N-glycosylase activity molecular_function owl:Class GO:0008534 biolink:NamedThing oxidized purine nucleobase lesion DNA N-glycosylase activity Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme-substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site. tmpzr1t_l9r_go_relaxed.owl 2,6-diamino-4-hydroxy-5(N-methyl)formamidopyrimidine-DNA glycosylase activity|DNA-formamidopyrimidine glycosylase activity|DNA glycohydrolase [2,6-diamino-4-hydroxy-5-(N-methyl)formamidopyrimide releasing]|DNA glycosylase/beta-lyase activity|purine-specific oxidized base lesion DNA N-glycosylase activity|Fpg protein|DNA glycosylase/AP-lyase activity|2,6-diamino-4-hydroxy-5N-formamidopyrimidine-DNA glycosylase activity|oxidized purine base lesion DNA N-glycosylase activity|formamidopyrimidine-DNA glycosylase activity|deoxyribonucleate glycosidase activity|8-oxoguanine DNA glycosylase activity|Fapy-DNA glycosylase activity|bifunctional DNA glycosylase activity MetaCyc:3.2.2.23-RXN|Reactome:R-HSA-110244|EC:3.2.2.23|Reactome:R-HSA-110243|Reactome:R-HSA-110229 Consider also annotating to the molecular function term 'DNA-(apurinic or apyrimidinic site) lyase activity ; GO:0003906'. GO:0003907 molecular_function owl:Class GO:0102357 biolink:NamedThing mithramycin dehydrogenase activity Catalysis of the reaction: mithramycin + NADP <=> mithramycin DK + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13385 molecular_function owl:Class GO:0051178 biolink:NamedThing meiotic chromosome decondensation The cell cycle process in which chromosome structure is altered from the condensed form held during meiosis to the relaxed dispersed form held in resting cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033533 biolink:NamedThing verbascose metabolic process The chemical reactions and pathways involving verbascose, the pentasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl verbascose metabolism biological_process owl:Class GO:0072181 biolink:NamedThing mesonephric duct formation The developmental process pertaining to the initial formation of a mesonephric duct. A mesonephric duct is a tube that drains the mesonephros. tmpzr1t_l9r_go_relaxed.owl Wolffian duct formation mah 2010-02-26T02:38:03Z biological_process owl:Class GO:0072180 biolink:NamedThing mesonephric duct morphogenesis The process in which the anatomical structures of the mesonephric duct are generated and organized. A mesonephric duct is a tube drains the mesonephros. tmpzr1t_l9r_go_relaxed.owl Wolffian duct morphogenesis mah 2010-02-26T02:37:13Z biological_process owl:Class GO:0005966 biolink:NamedThing cyclic-nucleotide phosphodiesterase complex An enzyme complex that catalyzes the hydrolysis of bonds in a cyclic nucleotide. tmpzr1t_l9r_go_relaxed.owl photoreceptor cyclic-nucleotide phosphodiesterase complex cellular_component owl:Class GO:0009667 biolink:NamedThing plastid inner membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the inner membrane of a plastid. tmpzr1t_l9r_go_relaxed.owl plastid inner membrane organisation|plastid inner membrane organization and biogenesis biological_process owl:Class GO:2000158 biolink:NamedThing positive regulation of ubiquitin-specific protease activity Any process that activates or increases the frequency, rate or extent of ubiquitin-specific protease (deubiquitinase) activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of deubiquitinase activity|positive regulation of UBP|positive regulation of ubiquitin hydrolase activity|positive regulation of UCH2 tb 2010-10-04T10:42:29Z biological_process owl:Class GO:0031245 biolink:NamedThing extrinsic component of periplasmic side of cell outer membrane The component of the cell outer membrane consisting of gene products and protein complexes that are loosely bound to periplasmic surface, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to internal leaflet of cell outer membrane|extrinsic to internal side of outer membrane|extrinsic to periplasmic side of cell outer membrane|extrinsic to internal side of cell outer membrane cellular_component owl:Class GO:0070501 biolink:NamedThing poly-gamma-glutamate biosynthetic process The chemical reactions and pathways resulting in the formation of poly-gamma-glutamate, a polymer of D- and/or L-glutamic acid residues linked by gamma-peptidyl bonds. tmpzr1t_l9r_go_relaxed.owl poly-gamma-glutamate anabolism|poly-gamma-glutamate biosynthesis|poly-gamma-glutamate formation|poly-gamma-glutamate synthesis biological_process owl:Class GO:0070500 biolink:NamedThing poly-gamma-glutamate metabolic process The chemical reactions and pathways involving poly-gamma-glutamate, a polymer of D- and/or L-glutamic acid residues linked by gamma-peptidyl bonds. tmpzr1t_l9r_go_relaxed.owl poly-gamma-glutamate metabolism biological_process owl:Class GO:0062073 biolink:NamedThing histone mRNA stem-loop binding complex A protein-containing complex composed of a stem-loop binding protein (in most species SLBP) and its interacting partner (SLIP1 or MIF4GD in most species) that binds to the histone mRNA (hmRNA) 3-prime-stem-loop structure. Facilitates hmRNA translation initiation and may also be involved in its processing and nuclear export. tmpzr1t_l9r_go_relaxed.owl SLBP-SLIP1 complex|SLBP-MIF4GD complex dph 2018-09-10T13:46:56Z cellular_component owl:Class GO:0051795 biolink:NamedThing positive regulation of timing of catagen Any process that activates or increases the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle. tmpzr1t_l9r_go_relaxed.owl up regulation of catagen|up-regulation of catagen|upregulation of catagen|activation of catagen|positive regulation of catagen|stimulation of catagen biological_process owl:Class GO:0070817 biolink:NamedThing P-TEFb-cap methyltransferase complex localization Any process in which the P-TEFb-cap methyltransferase complex is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl P-TEFb-cap methyltransferase complex localisation|establishment and maintenance of P-TEFb-cap methyltransferase complex localization mah 2009-07-13T04:20:17Z biological_process owl:Class GO:1903219 biolink:NamedThing negative regulation of malate dehydrogenase (decarboxylating) (NADP+) activity Any process that stops, prevents or reduces the frequency, rate or extent of malate dehydrogenase (decarboxylating) (NADP+) activity. tmpzr1t_l9r_go_relaxed.owl down regulation of NADP-specific malate dehydrogenase activity|negative regulation of 'malic' enzyme|inhibition of L-malate:NADP oxidoreductase activity|down regulation of NADP-specific malic enzyme|inhibition of malate dehydrogenase (decarboxylating, NADP)|down-regulation of NADP-linked decarboxylating malic enzyme|negative regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|down-regulation of L-malate:NADP oxidoreductase activity|inhibition of NADP-malic enzyme activity|negative regulation of malate dehydrogenase (NADP, decarboxylating)|down regulation of malate dehydrogenase (NADP, decarboxylating)|negative regulation of NADP-specific malic enzyme|downregulation of 'malic' enzyme|inhibition of malate dehydrogenase (decarboxylating) (NADP+) activity|down-regulation of malate dehydrogenase (decarboxylating) (NADP+) activity|downregulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|down regulation of malate dehydrogenase (decarboxylating, NADP)|negative regulation of L-malate:NADP oxidoreductase activity|inhibition of malate dehydrogenase (NADP, decarboxylating)|negative regulation of NADP-malic enzyme activity|negative regulation of NADP-linked decarboxylating malic enzyme|down-regulation of NADP-specific malic enzyme|inhibition of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|down regulation of L-malate:NADP oxidoreductase activity|inhibition of NADP-specific malic enzyme|downregulation of NADP-specific malic enzyme|down regulation of 'malic' enzyme|downregulation of malate dehydrogenase (decarboxylating, NADP)|down regulation of malate dehydrogenase (decarboxylating) (NADP+) activity|down-regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|down-regulation of NADP-malic enzyme activity|downregulation of L-malate:NADP oxidoreductase activity|down regulation of (S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)|negative regulation of NADP-specific malate dehydrogenase activity|down-regulation of malate dehydrogenase (decarboxylating, NADP)|inhibition of 'malic' enzyme|downregulation of malate dehydrogenase (decarboxylating) (NADP+) activity|inhibition of NADP-linked decarboxylating malic enzyme|inhibition of NADP-specific malate dehydrogenase activity|downregulation of NADP-specific malate dehydrogenase activity|downregulation of malate dehydrogenase (NADP, decarboxylating)|down regulation of NADP-linked decarboxylating malic enzyme|downregulation of NADP-linked decarboxylating malic enzyme|down-regulation of 'malic' enzyme|down-regulation of malate dehydrogenase (NADP, decarboxylating)|down-regulation of NADP-specific malate dehydrogenase activity|negative regulation of malate dehydrogenase (decarboxylating, NADP)|downregulation of NADP-malic enzyme activity|down regulation of NADP-malic enzyme activity sart 2014-07-24T11:17:28Z biological_process owl:Class GO:0031716 biolink:NamedThing calcitonin receptor binding Binding to a calcitonin receptor. tmpzr1t_l9r_go_relaxed.owl calcitonin receptor ligand molecular_function owl:Class GO:1904389 biolink:NamedThing rod bipolar cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a rod bipolar cell. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T19:01:11Z biological_process owl:Class GO:0018911 biolink:NamedThing 1,2,4-trichlorobenzene metabolic process The chemical reactions and pathways involving 1,2,4-trichlorobenzene, a derivative of benzene with chlorine atoms attached to positions 1, 2 and 4 of the ring. It is a colorless liquid used as a solvent in chemical manufacturing, in dyes and intermediates, dielectric fluid, synthetic transformer oils, lubricants, heat-transfer medium and insecticides. tmpzr1t_l9r_go_relaxed.owl 1,2,4-trichlorobenzene metabolism UM-BBD_pathwayID:tbz biological_process owl:Class GO:0048189 biolink:NamedThing Lid2 complex A protein complex involved in regulation of chromatin remodeling. In Schizosaccharomyces the complex contains Lid2, Ash2, Jmj3, Snt2, and Sdc1. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22010 cellular_component owl:Class GO:0102901 biolink:NamedThing isopimaradienol hydroxylase activity Catalysis of the reaction: H+ + isopimaradienol + NADPH + O2 <=> isopimaradiene-diol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8536 molecular_function owl:Class GO:1905007 biolink:NamedThing positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation Any process that activates or increases the frequency, rate or extent of epithelial to mesenchymal transition involved in endocardial cushion formation. tmpzr1t_l9r_go_relaxed.owl upregulation of epithelial to mesenchymal transition involved in endocardial cushion formation|up-regulation of epithelial to mesenchymal transition involved in endocardial cushion formation|activation of epithelial to mesenchymal transition involved in endocardial cushion formation|up regulation of epithelial to mesenchymal transition involved in endocardial cushion formation rl 2016-03-01T15:38:54Z biological_process owl:Class GO:0038140 biolink:NamedThing ERBB4-ERBB3 complex A heterodimeric complex between the tyrosine kinase receptors ERBB4 (also called HER4) and ERBB3 (also called HER3). ERBB3 has impaired kinase activity so relies on the kinase activity of its heterodimer partner for activation and signal transmission. tmpzr1t_l9r_go_relaxed.owl ERBB4:ERBB3 heterodimer|ERBB3-ERBB4 complex bf 2012-03-30T02:04:16Z cellular_component owl:Class GO:0004731 biolink:NamedThing purine-nucleoside phosphorylase activity Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl purine deoxynucleoside phosphorylase activity|inosine-guanosine phosphorylase activity|purine nucleoside phosphorylase activity|purine-nucleoside:phosphate ribosyltransferase activity|inosine phosphorylase activity|purine ribonucleoside phosphorylase activity|PUNPII|PUNPI|purine deoxyribonucleoside phosphorylase activity|PNPase activity Reactome:R-HSA-74249|RHEA:19805|EC:2.4.2.1|Reactome:R-HSA-112033|MetaCyc:PNP-RXN|Reactome:R-HSA-74242|Reactome:R-HSA-112034 molecular_function owl:Class GO:0071891 biolink:NamedThing N-terminal peptidyl-proline dimethylation involved in translation An N-terminal peptidyl-proline dimethylation process that contributes to translation. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-14T02:19:40Z biological_process owl:Class GO:2000383 biolink:NamedThing regulation of ectoderm development Any process that modulates the frequency, rate or extent of ectoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:17:10Z biological_process owl:Class GO:0071760 biolink:NamedThing IgY immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgY isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgY immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgY immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Note that IgY is found in amphibians, reptiles, and birds. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0033832 biolink:NamedThing alpha,alpha-trehalose phosphorylase (configuration-retaining) activity Catalysis of the reaction: alpha,alpha-trehalose + phosphate = alpha-D-glucose + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl trehalose phosphorylase activity|alpha,alpha-trehalose:phosphate alpha-D-glucosyltransferase activity RHEA:16257|MetaCyc:RXN-4441 molecular_function owl:Class GO:0070678 biolink:NamedThing preprotein binding Binding to a preprotein, the unprocessed form of a protein destined to undergo co- or post-translational processing. tmpzr1t_l9r_go_relaxed.owl unprocessed protein binding mah 2009-05-29T03:41:54Z molecular_function owl:Class GO:0032171 biolink:NamedThing germ tube septin cap A faint structure formed of septins found at the leading edge of growth in germ tubes of fungal cells growing filamentously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018049 biolink:NamedThing C-terminal peptidyl-serine amidation The formation of a C-terminal peptidyl-serine amide by hydrolysis and oxidation of an interior Ser-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0096 biological_process owl:Class GO:0019807 biolink:NamedThing aspartoacylase activity Catalysis of the reaction: N-acyl-L-aspartate + H2O = a fatty acid anion + L-aspartate. tmpzr1t_l9r_go_relaxed.owl acylase II|N-acetylaspartate amidohydrolase activity|acetyl-aspartic deaminase activity|aminoacylase II activity|N-acyl-L-aspartate amidohydrolase activity MetaCyc:ASPARTOACYLASE-RXN|EC:3.5.1.15|RHEA:10872|Reactome:R-HSA-5691507 molecular_function owl:Class GO:0008770 biolink:NamedThing [acyl-carrier-protein] phosphodiesterase activity Catalysis of the reaction: [acyl-carrier protein] + H2O = 4'-phosphopantetheine + apoprotein. tmpzr1t_l9r_go_relaxed.owl ACP phosphodiesterase activity|AcpH|holo-acyl-carrier-protein 4'-pantetheine-phosphohydrolase activity|ACP hydrolyase activity|acyl-carrier-protein 4'-pantetheine-phosphohydrolase activity|[acyl-carrier-protein] 4'-pantetheine-phosphohydrolase activity|[acyl-carrier protein] phosphodiesterase activity|acyl-carrier-protein phosphodiesterase activity MetaCyc:3.1.4.14-RXN|EC:3.1.4.14|RHEA:20537 molecular_function owl:Class GO:0098744 biolink:NamedThing 1-phosphatidylinositol 4-kinase activator activity Binds to and increases the activity of 1-phosphatidylinositol 4-kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900135 biolink:NamedThing positive regulation of renin secretion into blood stream Any process that activates or increases the frequency, rate or extent of renin secretion into blood stream. tmpzr1t_l9r_go_relaxed.owl up regulation of renin release into blood stream|up regulation of renin secretion into blood stream|upregulation of renin secretion into blood stream|upregulation of renin release into blood stream|activation of renin release into blood stream|up-regulation of renin release into blood stream|positive regulation of renin release into blood stream|activation of renin secretion into blood stream|up-regulation of renin secretion into blood stream rph 2012-02-27T10:32:08Z biological_process owl:Class GO:0016851 biolink:NamedThing magnesium chelatase activity Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate. tmpzr1t_l9r_go_relaxed.owl Mg-chelatase activity|magnesium-protoporphyrin IX chelatase activity|protoporphyrin IX magnesium-chelatase activity|Mg-protoporphyrin IX magnesio-lyase activity|magnesium-protoporphyrin chelatase activity|Mg-protoporphyrin IX chelatase activity|magnesium-chelatase activity|Mg-protoporphyrin IX magnesium-lyase activity|protoporphyrin IX Mg-chelatase activity MetaCyc:RXN1F-20|RHEA:13961|EC:6.6.1.1|KEGG_REACTION:R03877 Note that this was EC:4.99.1.1. molecular_function owl:Class GO:0034544 biolink:NamedThing trans-ACOHDA hydrolase activity Catalysis of the reaction: trans-4-amino-6-carboxy-2-oxo-hexa-3,5-dienoate + H2O = fumarylpyruvate + NH3. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0810|EC:3.5.99.- molecular_function owl:Class GO:0050328 biolink:NamedThing tetrahydroberberine oxidase activity Catalysis of the reaction: (S)-tetrahydroberberine + 2 O2 = berberine + 2 H2O2. tmpzr1t_l9r_go_relaxed.owl (S)-tetrahydroberberine:oxygen oxidoreductase activity|(S)-THB oxidase activity|THB oxidase activity RHEA:13489|EC:1.3.3.8|MetaCyc:TETRAHYDROBERBERINE-OXIDASE-RXN molecular_function owl:Class GO:0050126 biolink:NamedThing N-carbamoylputrescine amidase activity Catalysis of the reaction: N-carbamoylputrescine + H(2)O + 2 H(+) = CO(2) + NH(4)(+) + putrescine. tmpzr1t_l9r_go_relaxed.owl carbamoylputrescine hydrolase activity|NCP|N-carbamoylputrescine amidohydrolase activity EC:3.5.1.53|KEGG_REACTION:R01152|RHEA:22284|MetaCyc:N-CARBAMOYLPUTRESCINE-AMIDASE-RXN molecular_function owl:Class GO:0044350 biolink:NamedThing micropinocytosis An endocytosis process that results in the uptake of liquid material by cells from their external environment by invagination of the plasma membrane to form uncoated micropinosomes, differentiated from macropinosomes by their smaller size, on average 95 nm. tmpzr1t_l9r_go_relaxed.owl single-organism micropinocytosis|clathrin-independent pinocytosis jl 2013-12-02T14:26:30Z GO:1902540 biological_process owl:Class GO:0031363 biolink:NamedThing N-terminal protein amino acid deamination The removal of an amino group from the N-terminal amino acid residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042018 biolink:NamedThing interleukin-22 receptor activity Combining with interleukin-22 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-22R|IL-22 receptor activity molecular_function owl:Class GO:0034366 biolink:NamedThing spherical high-density lipoprotein particle A mature high-density lipoprotein (HDL) particle, converted from discoidal HDL particles following the esterification of cholesterol in the particle by phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT). tmpzr1t_l9r_go_relaxed.owl mature high-density lipoprotein particle|mature HDL|spherical HDL cellular_component owl:Class GO:0071720 biolink:NamedThing sodium-independent prostaglandin transport The directed, sodium-independent, movement of prostaglandins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T03:09:10Z biological_process owl:Class GO:0070552 biolink:NamedThing BRISC complex A protein complex that contains the FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and MERIT40/NBA1 proteins, and specifically cleaves K63-linked polyubiquitin chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061345 biolink:NamedThing planar cell polarity pathway involved in cardiac muscle cell fate commitment The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via effectors other than beta-catenin and contributing to a cardioblast being committed to a cardiac muscle cell fate. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-30T12:39:05Z biological_process owl:Class GO:0090624 biolink:NamedThing endoribonuclease activity, cleaving miRNA-paired mRNA Catalysis of the endonucleolytic cleavage of the mRNA in a double-stranded RNA molecule formed by the base pairing of an mRNA with an miRNA. tmpzr1t_l9r_go_relaxed.owl tb 2015-01-21T16:28:52Z molecular_function owl:Class GO:0008710 biolink:NamedThing 8-amino-7-oxononanoate synthase activity Catalysis of the reaction: L-alanine + H(+) + pimelyl-CoA = 8-amino-7-oxononanoate + CO(2) + CoA. tmpzr1t_l9r_go_relaxed.owl 7-keto-8-aminopelargonic synthetase activity|8-amino-7-oxopelargonate synthase activity|7-KAP synthetase activity|8-amino-7-ketopelargonate synthase activity|AONS activity|7-keto-8-amino-pelargonic acid synthetase activity|6-carboxyhexanoyl-CoA:L-alanine C-carboxyhexanoyltransferase (decarboxylating)|7-keto-8-aminopelargonic acid synthetase activity RHEA:20712|EC:2.3.1.47|MetaCyc:7KAPSYN-RXN|KEGG_REACTION:R03210 molecular_function owl:Class GO:0048620 biolink:NamedThing post-embryonic hindgut morphogenesis The process in which the anatomical structures of the hindgut are generated and organized, during the post-embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904790 biolink:NamedThing regulation of shelterin complex assembly Any process that modulates the frequency, rate or extent of shelterin complex assembly. tmpzr1t_l9r_go_relaxed.owl regulation of Pot1 complex assembly|regulation of telosome assembly|regulation of shelterin complex formation|regulation of Pot1-Tpz1 complex assembly nc 2015-11-06T16:13:03Z biological_process owl:Class GO:0033484 biolink:NamedThing nitric oxide homeostasis A homeostatic process involved in the maintenance of an internal steady state of nitric oxide within an organism or cell. tmpzr1t_l9r_go_relaxed.owl NO homeostasis biological_process owl:Class GO:0015699 biolink:NamedThing antimonite transport The directed movement of antimonite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034228 biolink:NamedThing ethanolamine transmembrane transporter activity Enables the transfer of ethanolamine from one side of a membrane to the other. Ethanolamine (2-aminoethanol, monoethanolamine) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids, such as phosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl 2-aminoethanol transmembrane transporter activity|ethanolamine permease activity|monoethanolamine transmembrane transporter activity RHEA:32747 molecular_function owl:Class GO:0010157 biolink:NamedThing response to chlorate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901048 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in regulation of multicellular organism growth A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription, that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size. tmpzr1t_l9r_go_relaxed.owl TGF-beta receptor signaling pathway of regulation of body growth|transforming growth factor beta receptor signaling pathway of regulation of body growth|TGFbeta receptor signalling pathway of regulation of body size|TGFbeta receptor signaling pathway of regulation of body size|TGFbeta receptor signalling pathway of regulation of multicellular organism growth|TGFbeta receptor signaling pathway of regulation of body growth|TGF-beta receptor signalling pathway of regulation of multicellular organism growth|transforming growth factor beta receptor signalling pathway of regulation of multicellular organism growth|transforming growth factor beta receptor signaling pathway of regulation of multicellular organism growth|transforming growth factor beta receptor signalling pathway of regulation of body growth|TGFbeta receptor signalling pathway of regulation of body growth|transforming growth factor beta receptor signalling pathway of regulation of body size|TGFbeta receptor signaling pathway of regulation of multicellular organism growth|TGF-beta receptor signalling pathway of regulation of body growth|TGF-beta receptor signaling pathway of regulation of body size|TGF-beta receptor signaling pathway of regulation of multicellular organism growth|TGF-beta receptor signalling pathway of regulation of body size|transforming growth factor beta receptor signaling pathway of regulation of body size kmv 2012-06-27T07:37:22Z biological_process owl:Class GO:0099119 biolink:NamedThing 3-demethylubiquinol-8 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-8 = S-adenosyl-L-homocysteine + ubiquinol-8. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018786 biolink:NamedThing haloalkane dehalogenase activity Catalysis of the reaction: 1-haloalkane + H2O = a primary alcohol + halide. tmpzr1t_l9r_go_relaxed.owl 1-haloalkane dehalogenase activity|1-chlorohexane halidohydrolase activity|1-haloalkane halidohydrolase activity RHEA:19081|MetaCyc:HALOALKANE-DEHALOGENASE-RXN|UM-BBD_enzymeID:e0003|EC:3.8.1.5 molecular_function owl:Class GO:0047383 biolink:NamedThing guanidinodeoxy-scyllo-inositol-4-phosphatase activity Catalysis of the reaction: 1-guanidino-1-deoxy-scyllo-inositol 4-phosphate + H(2)O = 1-guanidino-1-deoxy-scyllo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl 1-guanidino-1-deoxy-scyllo-inositol-4-P phosphohydrolase activity|1-guanidino-scyllo-inositol 4-phosphatase activity|1-guanidino-1-deoxy-scyllo-inositol-4-phosphate 4-phosphohydrolase activity RHEA:15777|MetaCyc:3.1.3.40-RXN|EC:3.1.3.40|KEGG_REACTION:R03496 molecular_function owl:Class GO:0048619 biolink:NamedThing embryonic hindgut morphogenesis The process in which the anatomical structures of the hindgut are generated and organized, during the embryonic phase. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000292 biolink:NamedThing RNA fragment catabolic process The chemical reactions and pathways resulting in the breakdown of a fragment of RNA, such as excised introns or sequences removed from ribosomal RNA during processing. tmpzr1t_l9r_go_relaxed.owl RNA fragment degradation|RNA fragment catabolism|group I intron catabolic process|RNA fragment breakdown GO:0030452 biological_process owl:Class GO:0060121 biolink:NamedThing vestibular receptor cell stereocilium organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of vestibular hair cells. tmpzr1t_l9r_go_relaxed.owl vestibular receptor cell stereocilium organisation|vestibular receptor cell stereocilium organization and biogenesis|vestibular hair cell stereocilium organization biological_process owl:Class GO:0036338 biolink:NamedThing viral membrane The lipid bilayer of a virion, a complete fully infectious extracellular virus particle. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-07T13:28:21Z cellular_component owl:Class GO:0140366 biolink:NamedThing galectin lattice A non-stoichiometric protein complex formed by several galectins crosslinking glycosylated ligands to form a dynamic lattice. The galectin lattice modulates receptor kinase signaling and the functionality of membrane receptors, by regulating the diffusion, compartmentalization and endocytosis of plasma membrane glycoproteins and glycolipids. tmpzr1t_l9r_go_relaxed.owl pg 2019-07-25T19:35:05Z cellular_component owl:Class GO:0003035 biolink:NamedThing detection of increased carbon dioxide by carotid body chemoreceptor signaling The process in which information about the levels of carbon dioxide are received and are converted to a molecular signal by chemoreceptors in a carotid body. tmpzr1t_l9r_go_relaxed.owl detection of increased carbon dioxide by carotid body chemoreceptor signalling biological_process owl:Class GO:0016501 biolink:NamedThing prostacyclin receptor activity Combining with prostacyclin (PGI(2)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PGI receptor activity|prostaglandin I receptor activity|PGI(2) receptor activity GO:0004959 molecular_function owl:Class GO:0080072 biolink:NamedThing spermidine:sinapoyl CoA N-acyltransferase activity Catalysis of the transfer of a sinapoyl group to a nitrogen atom on the spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T04:16:28Z molecular_function owl:Class GO:0033462 biolink:NamedThing GGC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GGC codon. tmpzr1t_l9r_go_relaxed.owl glycine tRNA Note that in the standard genetic code, GGC codes for glycine. molecular_function owl:Class GO:0050816 biolink:NamedThing phosphothreonine residue binding Binding to a phosphorylated threonine residue within a protein. tmpzr1t_l9r_go_relaxed.owl phosphothreonine binding molecular_function owl:Class GO:0002192 biolink:NamedThing IRES-dependent translational initiation of linear mRNA The process where translation initiation recruits the 40S ribosomal subunits via an internal ribosome entry segment (IRES) before an AUG codon is encountered in an appropriate sequence context to initiate linear mRNA translation. tmpzr1t_l9r_go_relaxed.owl hjd 2011-08-11T02:32:45Z biological_process owl:Class GO:1901612 biolink:NamedThing cardiolipin binding Binding to cardiolipin. tmpzr1t_l9r_go_relaxed.owl kmv 2012-11-12T21:19:50Z molecular_function owl:Class GO:0052621 biolink:NamedThing diguanylate cyclase activity Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl GTP:GTP guanylyltransferase activity RHEA:24898|EC:2.7.7.65|MetaCyc:RXN0-5359|KEGG_REACTION:R08057 GO:0043789 molecular_function owl:Class GO:0042962 biolink:NamedThing acridine:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + acridine(in) = H+(in) + acridine(out). tmpzr1t_l9r_go_relaxed.owl acridine efflux pump activity|acridine:hydrogen antiporter activity molecular_function owl:Class GO:0070157 biolink:NamedThing mitochondrial prolyl-tRNA aminoacylation The process of coupling proline to prolyl-tRNA in a mitochondrion, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015710 biolink:NamedThing tellurite transport The directed movement of tellurite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903495 biolink:NamedThing cellular response to dehydroepiandrosterone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dehydroepiandrosterone stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-09-25T17:01:26Z biological_process owl:Class GO:0001596 biolink:NamedThing angiotensin type I receptor activity An angiotensin receptor activity that acts via Gq-mediated activation of phospholipase C followed by phosphoinositide hydrolysis and Ca2+ signaling, and may act via additional signaling mechanisms. tmpzr1t_l9r_go_relaxed.owl PLC-activating angiotensin receptor activity molecular_function owl:Class GO:0110035 biolink:NamedThing rDNA spacer replication fork barrier binding, bending The activity of binding selectively, and in a sequence-specific manner, a replication fork barrier found in rDNA spacers, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-17T21:09:50Z molecular_function owl:Class GO:0031767 biolink:NamedThing gastric inhibitory polypeptide receptor binding Binding to a gastric inhibitory polypeptide receptor. tmpzr1t_l9r_go_relaxed.owl gastric inhibitory polypeptide receptor ligand molecular_function owl:Class GO:0070115 biolink:NamedThing organellar chromatophore intermembrane space The region between the inner and outer lipid bilayers that surround an organellar chromatophore. tmpzr1t_l9r_go_relaxed.owl Paulinella-type chromatophore intermembrane space cellular_component owl:Class GO:0008574 biolink:NamedThing plus-end-directed microtubule motor activity A motor activity that generates movement along a microtubule toward the plus end, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent microtubule motor activity, plus-end-directed|ATP-dependent plus-end-directed microtubule motor activity|kinesin ATP phosphohydrolase (plus-end-directed)|kinesin activity|plus-end-directed kinesin ATPase activity|microtubule motor activity, plus-end-directed|plus-end-directed ATP-dependent microtubule motor activity https://github.com/geneontology/go-ontology/issues/18664 EC:5.6.1.3|MetaCyc:3.6.4.4-RXN molecular_function owl:Class GO:0018063 biolink:NamedThing cytochrome c-heme linkage The linkage of cytochromes and other heme proteins to heme. tmpzr1t_l9r_go_relaxed.owl cytochrome c-haem linkage RESID:AA0135|RESID:AA0134 biological_process owl:Class GO:0044820 biolink:NamedThing mitotic telomere tethering at nuclear periphery The process in which a telomere is maintained in a specific location at the nuclear periphery, as part of a mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl jl 2013-11-19T16:16:22Z biological_process owl:Class GO:0034398 biolink:NamedThing telomere tethering at nuclear periphery The process in which a telomere is maintained in a specific location at the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030294 biolink:NamedThing receptor signaling protein tyrosine kinase inhibitor activity Stops, prevents or reduces the activity of a receptor signaling protein tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl receptor signalling protein tyrosine kinase inhibitor activity molecular_function owl:Class GO:0110120 biolink:NamedThing gamma-tubulin complex localization to nuclear side of mitotic spindle pole body Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location at the nuclear side of the mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-27T15:42:46Z biological_process owl:Class GO:0047552 biolink:NamedThing 2-oxoaldehyde dehydrogenase (NADP+) activity Catalysis of the reaction: a 2-oxoaldehyde + NADP+ + H2O = a 2-oxo acid + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADP-dependent alpha-ketoaldehyde dehydrogenase activity|2-ketoaldehyde dehydrogenase|alpha-ketoaldehyde dehydrogenase activity|NADP-linked alpha-ketoaldehyde dehydrogenase activity|methylglyoxal dehydrogenase activity|2-oxoaldehyde:NADP+ 2-oxidoreductase activity EC:1.2.1.49|MetaCyc:2-OXOALDEHYDE-DEHYDROGENASE-NADP+-RXN|RHEA:18129 molecular_function owl:Class GO:0033721 biolink:NamedThing aldehyde dehydrogenase (NADP+) activity Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADP-dependent aldehyde dehydrogenase activity|aldehyde:NADP+ oxidoreductase activity|NADP-acetaldehyde dehydrogenase activity EC:1.2.1.4|MetaCyc:ALDEHYDE-DEHYDROGENASE-NADP+-RXN|RHEA:11888 molecular_function owl:Class GO:0007384 biolink:NamedThing specification of segmental identity, thorax The specification of the characteristic structures of the thoracic segments following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090536 biolink:NamedThing NoRC complex An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2H in mammals, which contain two ISWI homologs) and a Tip5 homolog. In mammals, NoRC is involved in regulation of transcription from RNAP I and RNA polymerase III promoters. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-11T14:07:14Z cellular_component owl:Class GO:0033606 biolink:NamedThing chemokine receptor transport within lipid bilayer The directed movement of a chemokine receptor within a lipid bilayer. tmpzr1t_l9r_go_relaxed.owl chemokine receptor translocation within membrane biological_process owl:Class GO:0003944 biolink:NamedThing N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity Catalysis of the reaction: glycoprotein N-acetyl-D-glucosaminyl-phospho-D-mannose + H2O = N-acetyl-D-glucosamine + glycoprotein phospho-D-mannose. tmpzr1t_l9r_go_relaxed.owl glycoprotein-N-acetyl-D-glucosaminyl-phospho-D-mannose N-acetyl-D-glucosaminylphosphohydrolase activity|alpha-N-acetyl-D-glucosamine-1-phosphodiester N-acetylglucosaminidase activity|phosphodiester glycosidase activity|alpha-N-acetylglucosaminyl phosphodiesterase activity|2-acetamido-2-deoxy-alpha-D-glucose 1-phosphodiester acetamidodeoxyglucohydrolase activity|lysosomal alpha-N-acetylglucosaminidase activity EC:3.1.4.45|MetaCyc:3.1.4.45-RXN|RHEA:24372 molecular_function owl:Class GO:0046421 biolink:NamedThing methylisocitrate lyase activity Catalysis of the reaction: (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = pyruvate + succinate. tmpzr1t_l9r_go_relaxed.owl (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase (succinate-forming)|(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase activity|2-methylisocitrate lyase activity|MICL EC:4.1.3.30|KEGG_REACTION:R00409|RHEA:16809|MetaCyc:METHYLISOCITRATE-LYASE-RXN molecular_function owl:Class GO:0009509 biolink:NamedThing chromoplast A plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Chromoplast cellular_component owl:Class GO:0018483 biolink:NamedThing 6-oxohexanoate dehydrogenase activity Catalysis of the reaction: 6-oxohexanoate + NADP+ + H2O = adipate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 6-oxohexanoate:NADP+ oxidoreductase activity MetaCyc:6-OXOHEXANOATE-OXIDATION-RXN|EC:1.2.1.63|UM-BBD_reactionID:r0175|RHEA:13397 molecular_function owl:Class GO:0097167 biolink:NamedThing circadian regulation of translation Any process that modulates the frequency, rate or extent of mRNA translation with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA translation in response to circadian clock pr 2011-09-29T03:13:31Z biological_process owl:Class GO:0102955 biolink:NamedThing S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity Catalysis of the reaction: 2-demethylmenaquinol-7 + S-adenosyl-L-methionine = menaquinol-7 + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.163|RHEA:33255|MetaCyc:RXN-9191 molecular_function owl:Class GO:0010247 biolink:NamedThing detection of phosphate ion The series of events in which a phosphate ion stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl phosphate ion perception|phosphate ion sensing|phosphate ion detection biological_process owl:Class GO:1901382 biolink:NamedThing regulation of chorionic trophoblast cell proliferation Any process that modulates the frequency, rate or extent of chorionic trophoblast cell proliferation. tmpzr1t_l9r_go_relaxed.owl vk 2012-10-01T10:03:13Z biological_process owl:Class GO:0043221 biolink:NamedThing SMC family protein binding Binding to a protein from the structural maintenance of chromosomes (SMC) family, a group of chromosomal ATPases with a role in mitotic chromosome organization. tmpzr1t_l9r_go_relaxed.owl structural maintenance of chromosomes family protein binding molecular_function owl:Class GO:0034450 biolink:NamedThing ubiquitin-ubiquitin ligase activity Isoenergetic transfer of ubiquitin from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin -> Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E4 Reactome:R-HSA-975122|Reactome:R-HSA-937050 molecular_function owl:Class GO:0085026 biolink:NamedThing tubovesicular membrane network A complex, symbiont-induced host-derived organelle that is comprised of multiple protein and lipid domains. tmpzr1t_l9r_go_relaxed.owl TVM network|TVN jl 2010-07-09T03:55:41Z cellular_component owl:Class GO:0004507 biolink:NamedThing steroid 11-beta-monooxygenase activity Catalysis of the reaction: a steroid + reduced adrenal ferredoxin + O2 = an 11-beta-hydroxysteroid + oxidized adrenal ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome p450 XIB1 activity|steroid 11beta-monooxygenase activity|steroid,reduced-adrenal-ferredoxin:oxygen oxidoreductase (11beta-hydroxylating)|cytochrome P450 CYP11B1|steroid 11beta/18-hydroxylase activity|steroid 11-beta-hydroxylase activity|cytochrome P450 CYP11B2|steroid 11-beta/18-hydroxylase activity|steroid 11beta-hydroxylase activity|oxygenase, steroid 11beta -mono- Reactome:R-HSA-194017|EC:1.14.15.4|RHEA:15629|Reactome:R-HSA-5600598|Reactome:R-HSA-193997|Reactome:R-HSA-5580292|MetaCyc:STEROID-11-BETA-MONOOXYGENASE-RXN molecular_function owl:Class GO:0021956 biolink:NamedThing central nervous system interneuron axonogenesis Generation of a long process that carries efferent (outgoing) action potentials from the cell body towards target cells from a neuron located in the central nervous system whose axons remain within a single brain region. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047297 biolink:NamedThing asparagine-oxo-acid transaminase activity Catalysis of the reaction: a 2-oxo acid + L-asparagine = an amino acid + 2-oxosuccinamate. tmpzr1t_l9r_go_relaxed.owl asparagine--oxo-acid aminotransferase activity|asparagine-oxo-acid aminotransferase activity|asparagine-keto acid aminotransferase activity|L-asparagine:2-oxo-acid aminotransferase activity MetaCyc:2.6.1.14-RXN|EC:2.6.1.14|RHEA:19813 molecular_function owl:Class GO:0050391 biolink:NamedThing valine dehydrogenase (NADP) activity Catalysis of the reaction: L-valine + H2O + NADP+ = 3-methyl-2-oxobutanoate + NH3 + NADPH. tmpzr1t_l9r_go_relaxed.owl valine dehydrogenase (nicotinanide adenine dinucleotide phosphate)|L-valine:NADP+ oxidoreductase (deaminating)|valine dehydrogenase (NADP+) activity EC:1.4.1.8|MetaCyc:VALINE-DEHYDROGENASE-NADP+-RXN|RHEA:11156 molecular_function owl:Class GO:0071453 biolink:NamedThing cellular response to oxygen levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. tmpzr1t_l9r_go_relaxed.owl cellular response to oxygen mah 2009-12-16T04:43:59Z biological_process owl:Class GO:1990375 biolink:NamedThing baculum development The reproductive developmental process whose specific outcome is the progression of the baculum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl penile bone development|os penis development|penis bone development sl 2014-05-01T23:59:13Z biological_process owl:Class GO:0010575 biolink:NamedThing positive regulation of vascular endothelial growth factor production Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098620 biolink:NamedThing seryl-selenocysteinyl-tRNA kinase activity Catalysis of the reaction: Ser-tRNA(Sec) + ATP = Sep-tRNA(Sec) + ADP. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408507 molecular_function owl:Class GO:0047910 biolink:NamedThing galactose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: D-galactose + NADP+ = D-galactonolactone + NADPH. tmpzr1t_l9r_go_relaxed.owl D-galactose dehydrogenase (NADP+)|D-galactose:NADP+ 1-oxidoreductase activity MetaCyc:GALACTOSE-1-DEHYDROGENASE-NADP+-RXN|EC:1.1.1.120|RHEA:18625 molecular_function owl:Class GO:0043716 biolink:NamedThing 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity Catalysis of the reaction: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate. 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate is also known as HK-MTPenyl-P, and 1,2-dihydroxy-3-keto-5-methylthiopentene as DHK-MTPene. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-3-keto-5-methylthio-phosphopentene phosphatase activity|HK-MTPenyl-1-P phosphatase activity RHEA:14481|KEGG_REACTION:R07394|MetaCyc:R83-RXN molecular_function owl:Class GO:1901387 biolink:NamedThing positive regulation of voltage-gated calcium channel activity Any process that activates or increases the frequency, rate or extent of voltage-gated calcium channel activity. tmpzr1t_l9r_go_relaxed.owl up regulation of dihydropyridine-sensitive calcium channel activity|activation of voltage-dependent calcium channel activity|activation of depolarization-activated voltage-gated calcium channel activity|up regulation of depolarization-activated voltage-gated calcium channel activity|up-regulation of voltage-dependent calcium channel activity|positive regulation of voltage-gated calcium ion channel activity|up-regulation of voltage-gated calcium ion channel activity|positive regulation of dihydropyridine-sensitive calcium channel activity|positive regulation of voltage-sensitive calcium channel|positive regulation of depolarization-activated voltage gated calcium channel activity|activation of dihydropyridine-sensitive calcium channel activity|positive regulation of depolarization-activated voltage-gated calcium channel|up regulation of depolarization-activated calcium channel|upregulation of voltage-gated calcium channel activity|up-regulation of voltage-sensitive calcium channel|activation of depolarization-activated calcium channel|up regulation of voltage-gated calcium channel activity|up regulation of depolarization-activated voltage gated calcium channel activity|positive regulation of voltage gated calcium channel activity|upregulation of voltage-sensitive calcium channel|up-regulation of voltage-gated calcium channel activity|activation of voltage-gated calcium channel activity|up-regulation of depolarization-activated voltage-gated calcium channel|positive regulation of depolarization-activated calcium channel|upregulation of voltage-gated calcium ion channel activity|up-regulation of depolarization-activated voltage gated calcium channel activity|up-regulation of depolarization-activated calcium channel|positive regulation of voltage-dependent calcium channel activity|activation of voltage-gated calcium ion channel activity|up regulation of voltage gated calcium channel activity|activation of voltage gated calcium channel activity|activation of voltage-sensitive calcium channel|up-regulation of dihydropyridine-sensitive calcium channel activity|up-regulation of voltage gated calcium channel activity|upregulation of voltage-dependent calcium channel activity|up regulation of voltage-gated calcium ion channel activity|up-regulation of depolarization-activated voltage-gated calcium channel activity|up regulation of voltage-sensitive calcium channel|up regulation of voltage-dependent calcium channel activity|upregulation of voltage gated calcium channel activity|upregulation of depolarization-activated voltage-gated calcium channel|upregulation of dihydropyridine-sensitive calcium channel activity|activation of depolarization-activated voltage-gated calcium channel|upregulation of depolarization-activated calcium channel|upregulation of depolarization-activated voltage-gated calcium channel activity|positive regulation of depolarization-activated voltage-gated calcium channel activity|upregulation of depolarization-activated voltage gated calcium channel activity|activation of depolarization-activated voltage gated calcium channel activity|up regulation of depolarization-activated voltage-gated calcium channel vk 2012-10-01T10:35:32Z biological_process owl:Class GO:0019679 biolink:NamedThing propionate metabolic process, methylcitrate cycle The chemical reactions and pathways involving propionate that occur in the methylcitrate cycle. tmpzr1t_l9r_go_relaxed.owl propionate metabolism, methylcitrate cycle MetaCyc:PWY0-42 biological_process owl:Class GO:0086087 biolink:NamedThing voltage-gated potassium channel activity involved in bundle of His cell action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a bundle of His cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T01:30:20Z molecular_function owl:Class GO:0071473 biolink:NamedThing cellular response to cation stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-18T11:49:46Z biological_process owl:Class GO:1902752 biolink:NamedThing regulation of renal amino acid absorption Any process that modulates the frequency, rate or extent of renal amino acid absorption. tmpzr1t_l9r_go_relaxed.owl hjd 2014-03-05T15:43:55Z biological_process owl:Class GO:0035760 biolink:NamedThing cytoplasmic polyadenylation-dependent rRNA catabolic process The chemical reactions and pathways occurring in the cytoplasm and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA truncated degradation intermediate. tmpzr1t_l9r_go_relaxed.owl cytoplasmic poly(A)-dependent rRNA catabolic process bf 2011-03-25T02:14:50Z biological_process owl:Class GO:0036078 biolink:NamedThing minus-end specific microtubule depolymerization The removal of tubulin heterodimers from the minus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-19T03:20:25Z biological_process owl:Class GO:0019056 biolink:NamedThing modulation by virus of host transcription Any process in which a virus modulates the frequency, rate or extent of its host's transcription. tmpzr1t_l9r_go_relaxed.owl viral perturbation of host cell transcription|modification by virus of host transcription biological_process owl:Class GO:0001988 biolink:NamedThing positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure Any process that activates, maintains or increases the frequency, rate or extent of heart contraction as a result of the baroreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl up-regulation of heart contraction rate in baroreceptor response to decreased blood pressure|positive regulation of cardiac contraction rate in baroreceptor response to decreased blood pressure|stimulation of heart contraction rate in baroreceptor response to decreased blood pressure|upregulation of heart contraction rate in baroreceptor response to decreased blood pressure|activation of heart contraction rate in baroreceptor response to decreased blood pressure|positive control of heart contraction rate in baroreceptor response to decreased blood pressure|positive regulation of heart contraction rate in baroreceptor response to decreased blood pressure|up regulation of heart contraction rate in baroreceptor response to decreased blood pressure biological_process owl:Class GO:0046313 biolink:NamedThing phosphoarginine catabolic process The chemical reactions and pathways resulting in the breakdown of phosphoarginine, a phosphorylated derivative of the amino acid arginine. tmpzr1t_l9r_go_relaxed.owl phosphoarginine breakdown|phosphoarginine catabolism|phosphoarginine degradation biological_process owl:Class GO:0031761 biolink:NamedThing fMet-Leu-Phe receptor binding Binding to a fMet-Leu-Phe receptor. tmpzr1t_l9r_go_relaxed.owl fMet-Leu-Phe receptor ligand|N-formyl peptide receptor binding molecular_function owl:Class GO:0006189 biolink:NamedThing 'de novo' IMP biosynthetic process The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl 'de novo' purine biosynthetic process|'de novo' IMP biosynthesis|'de novo' purine biosynthesis|'de novo' IMP anabolism|'de novo' IMP synthesis|'de novo' IMP formation biological_process owl:Class GO:1904116 biolink:NamedThing response to vasopressin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vasopressin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-04-06T19:39:42Z biological_process owl:Class GO:0044795 biolink:NamedThing trans-Golgi network to recycling endosome transport The directed movement of substances, in membrane-bounded vesicles, from the trans-Golgi network to the recycling endosomes. tmpzr1t_l9r_go_relaxed.owl jl 2013-08-27T16:04:00Z biological_process owl:Class GO:0036400 biolink:NamedThing short neuropeptide F receptor activity Combining with a short neuropeptide F and transmitting the signal within the cell to initiate a change in cell activity. Short neuropeptide F is an arthropod peptide of less than 28 residues (as small as 8-10 residues in some species) with a C-terminal RFamide or LRFamide. tmpzr1t_l9r_go_relaxed.owl sNPF receptor activity Despite their naming, neuropeptide F (NPF) and short neuropeptide F (sNPF) are not closely related. bf 2013-07-18T14:46:40Z molecular_function owl:Class GO:0071279 biolink:NamedThing cellular response to cobalt ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T03:55:55Z biological_process owl:Class GO:0032025 biolink:NamedThing response to cobalt ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019444 biolink:NamedThing tryptophan catabolic process to catechol The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including catechol. tmpzr1t_l9r_go_relaxed.owl tryptophan degradation to catechol|tryptophan breakdown to catechol MetaCyc:TRPCAT-PWY biological_process owl:Class GO:0050545 biolink:NamedThing sulfopyruvate decarboxylase activity Catalysis of the reaction: 3-sulfopyruvate + H(+) = CO(2) + sulfoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl sulfopyruvate carboxy-lyase activity|sulfopyruvate carboxy-lyase (2-sulfoacetaldehyde-forming)|sulphopyruvate decarboxylase activity RHEA:20948|MetaCyc:R231-RXN|EC:4.1.1.79|KEGG_REACTION:R05774 molecular_function owl:Class GO:0039686 biolink:NamedThing bidirectional double-stranded viral DNA replication A viral DNA replication process where replication occurs in both directions from the starting point. This creates two replication forks, moving in opposite directions. tmpzr1t_l9r_go_relaxed.owl viral bidirectional dsDNA replication VZ:1939 bf 2013-10-17T14:42:09Z biological_process owl:Class GO:0019979 biolink:NamedThing interleukin-4 binding Binding to interleukin-4. tmpzr1t_l9r_go_relaxed.owl IL-4 binding molecular_function owl:Class GO:0018599 biolink:NamedThing 2-hydroxyisobutyrate 3-monooxygenase activity Catalysis of the reaction: 2-hydroxyisobutyrate + 1/2 O2 = 2,3-dihydroxy-2-methyl propionate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0619 molecular_function owl:Class GO:0050488 biolink:NamedThing ecdysteroid UDP-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + ecdysteroid = UDP + glucosyl-ecdysteroid. tmpzr1t_l9r_go_relaxed.owl ecdysteroid UDP-glucosyl/UDP-glucuronosyl transferase activity GO:0050489 molecular_function owl:Class GO:0102332 biolink:NamedThing fatty-acyl-[acp] elongase/decarboxylase activity Catalysis of the reaction: malonyl-CoA + H+ + a long-chain acyl-[acp] + a reduced electron acceptor = 2 carbon dioxide + coenzyme A + a terminal olefin + a holo-[acyl-carrier protein] + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13260 molecular_function owl:Class GO:0042349 biolink:NamedThing guiding stereospecific synthesis activity The orientation of free radical substrates in such a way that only a particular stereoisomer is synthesized by an enzyme. Best characterized as a function during lignan biosynthesis. tmpzr1t_l9r_go_relaxed.owl dirigent protein molecular_function owl:Class GO:0021556 biolink:NamedThing central nervous system formation The process that gives rise to the central nervous system. This process pertains to the initial formation of a structure from unspecified parts. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099557 biolink:NamedThing trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission Cell-cell signaling between presynapse and postsynapse, mediated by transynaptic protein complexes, that modulates the synaptic transmission properties of the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0061109 biolink:NamedThing dense core granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a dense core granule. A dense core granule is a secretory organelle found in endocrine cells. tmpzr1t_l9r_go_relaxed.owl dense core granule organisation dph 2010-05-01T09:34:37Z biological_process owl:Class GO:0042383 biolink:NamedThing sarcolemma The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sarcolemma cellular_component owl:Class GO:0048075 biolink:NamedThing positive regulation of eye pigmentation Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in the eye of an organism. tmpzr1t_l9r_go_relaxed.owl up-regulation of eye pigmentation|up regulation of eye pigmentation|activation of eye pigmentation|upregulation of eye pigmentation|stimulation of eye pigmentation biological_process owl:Class GO:0042078 biolink:NamedThing germ-line stem cell division The self-renewing division of a germline stem cell to produce a daughter stem cell and a daughter germ cell, which will divide to form the gametes. tmpzr1t_l9r_go_relaxed.owl germ-line stem cell renewal GO:0048131 biological_process owl:Class GO:0018753 biolink:NamedThing cyanuric acid amidohydrolase activity Catalysis of the reaction: cyanuric acid + H2O = biuret + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0116|MetaCyc:R468-RXN|RHEA:14641|EC:3.5.2.15 molecular_function owl:Class GO:0043770 biolink:NamedThing demethylmenaquinone methyltransferase activity Catalysis of the reaction: 2-demethylmenaquinone + S-adenosyl-L-methionine = menaquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.163 molecular_function owl:Class GO:0047379 biolink:NamedThing ADP-dependent short-chain-acyl-CoA hydrolase activity Catalysis of the reaction: H2O + a short-chain acyl-CoA = a short-chain carboxylate + CoA. tmpzr1t_l9r_go_relaxed.owl ADP-dependent propionyl coenzyme A hydrolase activity|ADP-dependent short-chain acyl-CoA thioesterase activity|ADP-dependent propionyl-CoA hydrolase activity|ADP-dependent short-chain acyl-CoA hydrolase activity|ADP-dependent short-chain acyl coenzyme A hydrolase activity|ADP-dependent propionyl-CoA thioesterase activity|ADP-dependent-short-chain-acyl-CoA hydrolase activity EC:3.1.2.18|MetaCyc:3.1.2.18-RXN molecular_function owl:Class GO:0097407 biolink:NamedThing Bunina body Small granular inclusions (about 1-3 microns in diameter) found in the anterior horn cells, and appearing either singly or in a group. Sometimes they are arranged in small beaded chains. Bunina bodies express cystatin C and consist of electron-dense amorphous material that contains tubules or vesicular structures. The amorphous material frequently includes a cytoplasmic island containing neurofilaments and other micro-organelles. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_20090101 pr 2012-10-31T13:52:30Z cellular_component owl:Class GO:0062206 biolink:NamedThing manoyl oxide synthase activity Catalysis of the reaction: 8-hydroxycopalyl diphosphate = (13R)-manoyl oxide + diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.190|RHEA:54516 dph 2020-01-03T14:48:52Z molecular_function owl:Class GO:0000805 biolink:NamedThing X chromosome The sex chromosome present in both sexes of species in which the male is the heterogametic sex. Two copies of the X chromosome are present in each somatic cell of females and one copy is present in males. tmpzr1t_l9r_go_relaxed.owl Wikipedia:X_chromosome cellular_component owl:Class GO:0003101 biolink:NamedThing regulation of systemic arterial blood pressure by circulatory epinephrine-norepinephrine The process in which epinephrine-norepinephrine modulate the force with which blood passes through the circulatory system. tmpzr1t_l9r_go_relaxed.owl regulation of blood pressure by circulating adrenaline-noradrenaline biological_process owl:Class GO:0047706 biolink:NamedThing biochanin-A reductase activity Catalysis of the reaction: dihydrobiochanin A + NADP(+) = biochanin A + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl dihydrobiochanin-A:NADP+ delta2-oxidoreductase activity RHEA:12817|KEGG_REACTION:R02954|EC:1.3.1.46|MetaCyc:BIOCHANIN-A-REDUCTASE-RXN molecular_function owl:Class GO:0106238 biolink:NamedThing peregrinol diphosphate synthase activity Catalysis of the reaction:peregrinol diphosphate = all-trans-geranylgeranyl diphosphate + H2O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.174|RHEA:54652 hjd 2019-12-19T15:28:28Z molecular_function owl:Class GO:0060586 biolink:NamedThing multicellular organismal iron ion homeostasis Any process involved in the maintenance of the distribution of iron stores within tissues and organs of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-08T02:18:21Z biological_process owl:Class GO:0015657 biolink:NamedThing branched-chain amino acid:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: branched-chain amino acid(out) + cation(out) = branched-chain amino acid(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033454 biolink:NamedThing GCC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GCC codon. tmpzr1t_l9r_go_relaxed.owl alanine tRNA Note that in the standard genetic code, GCC codes for alanine. molecular_function owl:Class GO:0010188 biolink:NamedThing response to microbial phytotoxin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021650 biolink:NamedThing vestibulocochlear nerve formation The process that gives rise to the vestibulocochlear nerve. This process pertains to the initial formation of a structure from unspecified parts. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea. tmpzr1t_l9r_go_relaxed.owl CN VII formation biological_process owl:Class GO:1990509 biolink:NamedThing PYM-mago-Y14 complex Protein complex involved in the disassembly of Mago-Y14 from the spliced mRNA during first round of translation, independently of the translational machinery. Conserved from fission yeast to humans. tmpzr1t_l9r_go_relaxed.owl PYM-mago-RNA-binding protein 8A complex|wibg-mago-tsu complex An example of this is wibg in Drosophila melanogaster (P82804) in PMID:14968132 (inferred from physical interaction). bhm 2014-10-03T12:52:01Z cellular_component owl:Class GO:1900082 biolink:NamedThing negative regulation of arginine catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of arginine catabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of arginine breakdown|down-regulation of arginine catabolic process|downregulation of arginine degradation|down-regulation of arginine degradation|inhibition of arginine degradation|downregulation of arginine catabolic process|downregulation of arginine breakdown|inhibition of arginine catabolic process|negative regulation of arginine catabolism|inhibition of arginine catabolism|down regulation of arginine degradation|negative regulation of arginine breakdown|inhibition of arginine breakdown|down regulation of arginine catabolism|negative regulation of arginine degradation|down-regulation of arginine breakdown|down-regulation of arginine catabolism|down regulation of arginine catabolic process|downregulation of arginine catabolism pr 2012-02-01T04:04:45Z biological_process owl:Class GO:0070066 biolink:NamedThing cellubrevin-VAMP4-endobrevin-syntaxin-6 complex A SNARE complex that contains cellubrevin (VAMP3), VAMP4, endobrevin (VAMP8), and syntaxin 6 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (Vamp3, Vamp4, Vam8, Stx6)|Vamp3-Vamp4-Vam8-Stx6 complex cellular_component owl:Class GO:0061782 biolink:NamedThing vesicle fusion with vesicle Fusion of the membrane of a transport vesicle with a target membrane on another vesicle. tmpzr1t_l9r_go_relaxed.owl vesicle-vesicle fusion|vesicle to vesicle fusion dph 2016-09-06T13:29:49Z biological_process owl:Class GO:0071254 biolink:NamedThing cytoplasmic U snRNP body A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies. tmpzr1t_l9r_go_relaxed.owl U body|U-body mah 2009-12-04T10:31:29Z cellular_component owl:Class GO:0051218 biolink:NamedThing tungsten incorporation via L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) The incorporation of tungsten into a protein via L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide). tmpzr1t_l9r_go_relaxed.owl RESID:AA02376 biological_process owl:Class GO:0089706 biolink:NamedThing L-ornithine transmembrane export from vacuole The directed movement of L-ornithine out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901970 biolink:NamedThing positive regulation of mitotic sister chromatid separation Any process that activates or increases the frequency, rate or extent of mitotic sister chromatid separation. tmpzr1t_l9r_go_relaxed.owl positive regulation of chromosome separation during mitosis|activation of chromosome separation during mitosis|positive regulation of mitotic chromosome separation|up regulation of mitotic sister chromatid separation|positive regulation of sister chromatid separation during mitosis|up regulation of mitotic chromosome separation|activation of mitotic sister chromatid separation|upregulation of mitotic chromosome separation|up-regulation of chromosome separation during mitosis|upregulation of sister chromatid separation during mitosis|up regulation of sister chromatid separation during mitosis|activation of sister chromatid separation during mitosis|up-regulation of sister chromatid separation during mitosis|up-regulation of mitotic sister chromatid separation|upregulation of mitotic sister chromatid separation|activation of mitotic sister chromatid resolution|positive regulation of mitotic sister chromatid resolution|up-regulation of mitotic sister chromatid resolution|upregulation of chromosome separation during mitosis|up regulation of mitotic sister chromatid resolution|up-regulation of mitotic chromosome separation|upregulation of mitotic sister chromatid resolution|activation of mitotic chromosome separation|up regulation of chromosome separation during mitosis al 2013-02-22T19:06:19Z biological_process owl:Class GO:0031534 biolink:NamedThing minus-end directed microtubule sliding The movement of one microtubule along another microtubule, where the motion is directed towards the minus ends of the microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051012 biolink:NamedThing microtubule sliding The movement of one microtubule along another microtubule. tmpzr1t_l9r_go_relaxed.owl microtubule translocation biological_process owl:Class GO:1990934 biolink:NamedThing nucleolus-like body A nuclear compartment containing significant amounts of non-nucleolar, spliceosomal components. It is commonly found in germinal vesicle (GV) stage oocytes, and is similar to both nucleoli and sphere organelles. tmpzr1t_l9r_go_relaxed.owl NLB|compact nucleolus sl 2016-03-21T21:28:14Z cellular_component owl:Class GO:0016761 biolink:NamedThing cellulose synthase (GDP-forming) activity Catalysis of the reaction: GDP-glucose + ((1,4)-beta-D-glucosyl)(n) = GDP + ((1,4)-beta-D-glucosyl)(n+1). tmpzr1t_l9r_go_relaxed.owl GDPglucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity|cellulose synthase (guanosine diphosphate-forming) activity|guanosine diphosphoglucose-1,4-beta-glucan glucosyltransferase activity|GDP-glucose-cellulose glucosyltransferase activity|GDP-glucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity|GDP-glucose-beta-D-glucan glucosyltransferase activity|guanosine diphosphoglucose-cellulose glucosyltransferase activity EC:2.4.1.29|MetaCyc:CELLULOSE-SYNTHASE-GDP-FORMING-RXN|RHEA:17797 molecular_function owl:Class GO:0016759 biolink:NamedThing cellulose synthase activity Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). tmpzr1t_l9r_go_relaxed.owl cellulose synthetase activity molecular_function owl:Class GO:1990889 biolink:NamedThing H4K20me3 modified histone binding Binding to a histone H4 in which the lysine residue at position 20 has been modified by trimethylation. tmpzr1t_l9r_go_relaxed.owl al 2015-10-30T15:43:09Z molecular_function owl:Class GO:0001002 biolink:NamedThing RNA polymerase III type 1 promoter sequence-specific DNA binding Binding to a sequence of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 1 promoter DNA binding krc 2010-08-18T05:38:20Z GO:0001030 molecular_function owl:Class GO:0009366 biolink:NamedThing enterobactin synthetase complex A multienzyme complex usually composed of four proteins, EntB, EntD, EntE and EntF. Plays a role in the enterobactin biosynthesis pathway. tmpzr1t_l9r_go_relaxed.owl enterochelin synthetase complex MetaCyc:ENTMULTI-CPLX cellular_component owl:Class GO:0061030 biolink:NamedThing epithelial cell differentiation involved in mammary gland alveolus development The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland alveolus. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T09:43:00Z biological_process owl:Class GO:0001162 biolink:NamedThing RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding Binding to an RNA polymerase II intronic DNA sequence that regulates the transcription of the transcript it is contained within. tmpzr1t_l9r_go_relaxed.owl To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. krc 2011-01-28T03:46:19Z molecular_function owl:Class GO:1901899 biolink:NamedThing positive regulation of relaxation of cardiac muscle Any process that activates or increases the frequency, rate or extent of relaxation of cardiac muscle. tmpzr1t_l9r_go_relaxed.owl upregulation of relaxation of cardiac muscle|up regulation of relaxation of cardiac muscle|up-regulation of relaxation of cardiac muscle|activation of relaxation of cardiac muscle rl 2013-02-06T21:27:07Z biological_process owl:Class GO:1904844 biolink:NamedThing response to L-glutamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-glutamine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-12-07T19:39:17Z biological_process owl:Class GO:0060404 biolink:NamedThing axonemal microtubule depolymerization The removal of tubulin heterodimers from one or both ends of an axonemal microtubule. An axonemal microtubule is a microtubule in the axoneme of a cilium or flagellum; an axoneme contains nine modified doublet microtubules surrounding a pair of single microtubules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990029 biolink:NamedThing vasomotion The rhythmical contraction and relaxation of arterioles, observed as slow and fast waves, with frequencies of 1-2 and 10-20 cpm. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-06T22:30:21Z biological_process owl:Class GO:0034534 biolink:NamedThing 1-methylnaphthalene hydroxylase activity Catalysis of the reaction: 1-methylnaphthalene + NADH + H+ + O2 = 1-hydroxymethylnaphthalene + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0795|EC:1.14.13.- molecular_function owl:Class GO:0018454 biolink:NamedThing acetoacetyl-CoA reductase activity Catalysis of the reaction: (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl D-3-hydroxyacyl-CoA reductase activity|(R)-3-hydroxyacyl-CoA dehydrogenase activity|short chain beta-ketoacetyl(acetoacetyl)-CoA reductase activity|beta-ketoacyl-CoA reductase|(R)-3-hydroxyacyl-CoA:NADP+ oxidoreductase activity|acetoacetyl coenzyme A reductase activity|D(-)-beta-hydroxybutyryl CoA-NADP oxidoreductase activity|hydroxyacyl coenzyme-A dehydrogenase activity|NADPH:acetoacetyl-CoA reductase activity|NADP-linked acetoacetyl CoA reductase activity RHEA:22256|MetaCyc:RXN-7698|EC:1.1.1.36|UM-BBD_reactionID:r0202 molecular_function owl:Class GO:0002316 biolink:NamedThing follicular B cell differentiation The process in which a B cell in the spleen acquires the specialized features of a follicular B cell. Follicular B cells are major population of mature recirculating B cells in the spleen and are located in the B-cell follicle region. tmpzr1t_l9r_go_relaxed.owl follicular B lymphocyte differentiation|follicular B-lymphocyte differentiation|follicular B cell development|follicular B-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0043196 biolink:NamedThing varicosity Non-terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043079 biolink:NamedThing antipodal cell nucleus The nucleus of an antipodal cell, one of three cells of the embryo sac in angiosperms, found at the chalazal end of the embryo away from the point of entry of the pollen tube, and its descendents. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099110 biolink:NamedThing microtubule polymerization based protein transport to cell tip cortex The transport of a protein to the cortex of the cell tip, driven by polymerization of a microtubule to which the protein is attached. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047724 biolink:NamedThing inosine nucleosidase activity Catalysis of the reaction: inosine + H2O = D-ribose + hypoxanthine. tmpzr1t_l9r_go_relaxed.owl inosine-guanosine nucleosidase activity|inosinase activity|inosine ribohydrolase activity EC:3.2.2.2|RHEA:16657|MetaCyc:INOSINE-NUCLEOSIDASE-RXN molecular_function owl:Class GO:1901859 biolink:NamedThing negative regulation of mitochondrial DNA metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial DNA metabolic process. tmpzr1t_l9r_go_relaxed.owl inhibition of mtDNA metabolism|downregulation of mitochondrial DNA metabolism|inhibition of mtDNA metabolic process|down-regulation of mitochondrial DNA metabolic process|down-regulation of mtDNA metabolism|down regulation of mitochondrial DNA metabolic process|negative regulation of mtDNA metabolism|inhibition of mitochondrial DNA metabolism|down regulation of mtDNA metabolic process|inhibition of mitochondrial DNA metabolic process|down-regulation of mtDNA metabolic process|negative regulation of mtDNA metabolic process|down regulation of mitochondrial DNA metabolism|downregulation of mtDNA metabolic process|down-regulation of mitochondrial DNA metabolism|downregulation of mitochondrial DNA metabolic process|down regulation of mtDNA metabolism|downregulation of mtDNA metabolism|negative regulation of mitochondrial DNA metabolism yaf 2013-02-01T10:05:09Z biological_process owl:Class GO:0052685 biolink:NamedThing perillic acid-CoA ligase (ADP-forming) activity Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + ADP + phosphate + perillyl-CoA. tmpzr1t_l9r_go_relaxed.owl perillyl-CoA synthetase activity|perillic acid:CoA ligase (ADP-forming) activity EC:6.2.1.-|KEGG_REACTION:R06367 molecular_function owl:Class GO:1900679 biolink:NamedThing negative regulation of ferricrocin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of ferricrocin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of ferricrocin synthesis|negative regulation of ferricrocin biosynthesis|downregulation of ferricrocin anabolism|downregulation of ferricrocin biosynthetic process|inhibition of ferricrocin synthesis|down-regulation of ferricrocin biosynthesis|downregulation of ferricrocin biosynthetic process, peptide formation|down-regulation of ferricrocin biosynthetic process|negative regulation of ferricrocin biosynthetic process, peptide formation|down-regulation of ferricrocin anabolism|down regulation of ferricrocin biosynthetic process, peptide modification|down regulation of ferricrocin synthesis|downregulation of ferricrocin synthesis|down regulation of ferricrocin biosynthetic process|negative regulation of ferricrocin biosynthetic process, peptide modification|negative regulation of ferricrocin anabolism|down regulation of ferricrocin formation|down-regulation of ferricrocin formation|down regulation of ferricrocin biosynthetic process, peptide formation|down regulation of ferricrocin anabolism|down regulation of ferricrocin biosynthesis|down-regulation of ferricrocin synthesis|inhibition of ferricrocin biosynthetic process, peptide modification|inhibition of ferricrocin formation|down-regulation of ferricrocin biosynthetic process, peptide formation|inhibition of ferricrocin anabolism|inhibition of ferricrocin biosynthesis|negative regulation of ferricrocin formation|downregulation of ferricrocin biosynthesis|downregulation of ferricrocin formation|inhibition of ferricrocin biosynthetic process|inhibition of ferricrocin biosynthetic process, peptide formation|down-regulation of ferricrocin biosynthetic process, peptide modification|downregulation of ferricrocin biosynthetic process, peptide modification di 2012-05-22T04:28:15Z biological_process owl:Class GO:0007294 biolink:NamedThing germarium-derived oocyte fate determination The cell fate determination process in which a germarium-derived cell becomes capable of differentiating autonomously into an oocyte cell regardless of its environment; upon determination, the cell fate cannot be reversed. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl maintenance of oocyte identity|oocyte cell fate determination GO:0016350 biological_process owl:Class GO:0050530 biolink:NamedThing glucosylglycerol 3-phosphatase activity Catalysis of the reaction: 2-O-(beta-D-glucosyl)-sn-glycerol 3-phosphate + H(2)O = 2-O-(beta-D-glucosyl)-sn-glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-(beta-D-glucosyl)-sn-glycerol-3-phosphate phosphohydrolase activity|StpA|salt tolerance protein A MetaCyc:3.1.3.69-RXN|EC:3.1.3.69|RHEA:22652|KEGG_REACTION:R05791 molecular_function owl:Class GO:0018386 biolink:NamedThing N-terminal peptidyl-cysteine condensation with pyruvate to form N-pyruvic acid 2-iminyl-L-cysteine The condensation of pyruvate through the 2-oxo group with the N-terminal cysteine of proteins to form the derivative N-pyruvic acid 2-iminyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0274 biological_process owl:Class GO:0103086 biolink:NamedThing methylthiopentylmalate isomerase activity Catalysis of the reaction: 2-(5'-methylthio)pentylmalate <=> 3-(5'-methylthio)pentylmalate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4170 molecular_function owl:Class GO:1905947 biolink:NamedThing positive regulation of response to calcium ion Any process that activates or increases the frequency, rate or extent of response to calcium ion. tmpzr1t_l9r_go_relaxed.owl activation of response to Ca2+ ion|positive regulation of response to Ca2+ ion|activation of response to calcium ion|up regulation of response to Ca2+ ion|up-regulation of response to Ca2+ ion|upregulation of response to Ca2+ ion|up regulation of response to calcium ion|up-regulation of response to calcium ion|upregulation of response to calcium ion bc 2017-02-13T10:56:49Z biological_process owl:Class GO:0039700 biolink:NamedThing fusion of viral membrane with host outer nuclear membrane Fusion of a viral primary envelope with the host outer nuclear membrane during nuclear egress. The transitory primary envelope is acquired by the virus as it buds at the inner nuclear membrane and gains access to the perinuclear space. This membrane is lost by fusing with the host outer nuclear membrane during nuclear exit. tmpzr1t_l9r_go_relaxed.owl fusion of viral membrane with host outer nuclear membrane involved in nuclear egress|viral primary envelope fusion with host outer nuclear membrane bf 2013-11-06T15:07:46Z biological_process owl:Class GO:0061249 biolink:NamedThing mesonephric glomerular capillary formation The process that gives rise to a mesonephric glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T01:17:08Z biological_process owl:Class GO:0070670 biolink:NamedThing response to interleukin-4 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-4 mah 2009-05-29T10:01:46Z biological_process owl:Class GO:0043874 biolink:NamedThing acireductone synthase activity Catalysis of the reactions: 5-(methylthio)-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate; (1a) 5-(methylthio)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate; (1b) 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate. tmpzr1t_l9r_go_relaxed.owl E-1|5-(methylthio)-2,3-dioxopentyl-phosphate phosphohydrolase (isomerizing)|E-1 enolase-phosphatase Reactome:R-HSA-1237129|EC:3.1.3.77|MetaCyc:3.1.3.77-RXN|RHEA:21700 This function is involved in the process of methionine salvage. molecular_function owl:Class GO:1903680 biolink:NamedThing acinar cell of sebaceous gland differentiation The process in which a relatively unspecialized cell acquires the specialized features of an acinar cell of sebaceous gland. tmpzr1t_l9r_go_relaxed.owl sebocyte differentiation cls 2014-11-30T11:51:57Z biological_process owl:Class GO:1905298 biolink:NamedThing regulation of intestinal epithelial cell development Any process that modulates the frequency, rate or extent of intestinal epithelial cell development. tmpzr1t_l9r_go_relaxed.owl rph 2016-06-30T11:40:47Z biological_process owl:Class GO:0110142 biolink:NamedThing ubiquinone biosynthesis complex The cytosolic ubiquinone biosynthesis complex is composed of enzymes and accessory factors of the ubiquinone biosynthesis pathway and enables synthesis of the extremely hydrophobic molecule ubiquinone. In E. coli, the complex is composed of seven proteins: UbiE, F, G, H, I, J and K. tmpzr1t_l9r_go_relaxed.owl CoQ metabolon|Ubi complex kmv 2019-04-25T15:48:21Z cellular_component owl:Class GO:0003948 biolink:NamedThing N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-D-glucosaminylamine + L-aspartate + H(+). tmpzr1t_l9r_go_relaxed.owl aspartylglucosaminidase activity|4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase activity|aspartylglucosylaminase activity|N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase activity|glycosylasparaginase activity|aspartylglycosylamine amidohydrolase activity|N-aspartyl-beta-glucosaminidase activity|aspartylglucosylamine deaspartylase activity|aspartylglucosylaminidase activity|beta-aspartylglucosylamine amidohydrolase activity|glucosylamidase activity KEGG_REACTION:R03421|EC:3.5.1.26|MetaCyc:3.5.1.26-RXN|RHEA:11544 molecular_function owl:Class GO:0030743 biolink:NamedThing rRNA (adenosine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing a single residue of 2'-O-methyladenosine. tmpzr1t_l9r_go_relaxed.owl rRNA adenosine 2'-methylase activity|S-adenosyl-L-methionine:rRNA (adenosine-2'-O)-methyltransferase activity|ribosomal ribonucleate adenosine 2'-methyltransferase activity|RNA-pentose methylase activity|thiostrepton-resistance methylase activity RHEA:43212|EC:2.1.1.230|MetaCyc:2.1.1.66-RXN molecular_function owl:Class GO:0006640 biolink:NamedThing monoacylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of monoacylglycerol, any ester of glycerol in which any one of its hydroxyl groups has been acylated with a fatty acid, the other being non-esterified. tmpzr1t_l9r_go_relaxed.owl monoacylglycerol formation|monoglyceride biosynthesis|monoacylglycerol anabolism|monoacylglycerol synthesis|monoglyceride biosynthetic process|monoacylglycerol biosynthesis biological_process owl:Class GO:0060607 biolink:NamedThing cell-cell adhesion involved in sealing an epithelial fold The attachment of one cell to another cell along the edges of two epithelial folds, giving rise to the lumen of an epithelial tube. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-15T09:48:49Z biological_process owl:Class GO:0061476 biolink:NamedThing response to anticoagulant Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anticoagulant stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:07:00Z biological_process owl:Class GO:0102404 biolink:NamedThing linalyl 6-O-alpha-L-arabinopyranosyl-beta-D-glucopyranoside glucosidase (Yabukita) activity Catalysis of the reaction: linalyl 6-O-alpha-L-arabinopyranosyl- beta-D-glucopyranoside + H2O <=> vicianose + linalool. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.149|MetaCyc:RXN-13701 molecular_function owl:Class GO:0019647 biolink:NamedThing formaldehyde assimilation via ribulose monophosphate cycle The pathway in which formaldehyde is used as a carbon source in the ribulose monophosphate cycle. Methanotrophic bacteria produce formaldehyde from the oxidation of methane and methanol, and then assimilate it via the ribulose monophosphate cycle to form intermediates of the central metabolic routes that are subsequently used for biosynthesis of cell material. Three molecules of formaldehyde are assimilated, forming a three-carbon intermediate of central metabolism; in this pathway, all cellular carbon is assimilated at the oxidation level of formaldehyde. tmpzr1t_l9r_go_relaxed.owl ribulose monophosphate cycle|formaldehyde assimilation via RuMP cycle MetaCyc:PWY-1861 biological_process owl:Class GO:0019649 biolink:NamedThing formaldehyde assimilation The pathways in which formaldehyde is processed and used as a carbon source for the cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002926 biolink:NamedThing tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation The process whereby a wobble base uridine residue in a tRNA is modified to 5-methoxycarbonylmethyl-2-thiouridine. tmpzr1t_l9r_go_relaxed.owl mcm5s2U34 biosynthesis|mcm5 modification|tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis hjd 2012-01-17T02:50:54Z biological_process owl:Class GO:0046370 biolink:NamedThing fructose biosynthetic process The chemical reactions and pathways resulting in the formation of fructose, the ketohexose arabino-2-hexulose. tmpzr1t_l9r_go_relaxed.owl fructose formation|fructose anabolism|fructose synthesis|fructose biosynthesis biological_process owl:Class GO:0050158 biolink:NamedThing orotate reductase (NADPH) activity Catalysis of the reaction: (S)-dihydroorotate + NADP(+) = H(+) + NADPH + orotate. tmpzr1t_l9r_go_relaxed.owl (S)-dihydroorotate:NADP+ oxidoreductase activity|dihydro-orotic dehydrogenase activity|L-5,6-dihydro-orotate:NAD oxidoreductase activity|orotate reductase activity RHEA:14861|KEGG_REACTION:R01866|MetaCyc:OROTATE-REDUCTASE-NADPH-RXN|EC:1.3.1.15 molecular_function owl:Class GO:0004756 biolink:NamedThing selenide, water dikinase activity Catalysis of the reaction: ATP + H(2)O + hydrogen selenide = AMP + 3 H(+) + phosphate + selenophosphorate. tmpzr1t_l9r_go_relaxed.owl selenide,water dikinase activity|selenophosphate synthase activity|selenophosphate synthetase activity|ATP:selenide, water phosphotransferase activity|selenium donor protein activity EC:2.7.9.3|KEGG_REACTION:R03595|MetaCyc:2.7.9.3-RXN|RHEA:18737|UM-BBD_reactionID:r0833|Reactome:R-HSA-8959510 molecular_function owl:Class GO:0102725 biolink:NamedThing 24-methyldesmosterol reductase activity Catalysis of the reaction: H+ + 24-methyldesmosterol + NADPH = campesterol + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-708 molecular_function owl:Class GO:0050238 biolink:NamedThing pyridoxine 5-dehydrogenase activity Catalysis of the reaction: pyridoxine + acceptor = isopyridoxal + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl pyridoxine 5'-dehydrogenase activity|pyridoxol 5-dehydrogenase activity|pyridoxal-5-dehydrogenase activity|pyridoxine:(acceptor) 5-oxidoreductase activity|pyridoxin 5-dehydrogenase activity|pyridoxine:acceptor 5-oxidoreductase activity EC:1.1.99.9|MetaCyc:PYRIDOXINE-5-DEHYDROGENASE-RXN|RHEA:14497 molecular_function owl:Class GO:0003017 biolink:NamedThing lymph circulation The flow of lymph through the body of an animal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034083 biolink:NamedThing type III polyketide synthase complex A polyketide synthase complex that consists of two identical ketosynthase polypeptides. tmpzr1t_l9r_go_relaxed.owl type III PKS|type III polyketide synthase|type III PKS complex cellular_component owl:Class GO:1900168 biolink:NamedThing positive regulation of glial cell-derived neurotrophic factor production Any process that activates or increases the frequency, rate or extent of glial cell-derived neurotrophic factor production. tmpzr1t_l9r_go_relaxed.owl positive regulation of glial cell line-derived neurotrophic factor secretion|activation of glial cell line-derived neurotrophic factor secretion|positive regulation of glial cell-derived neurotrophic factor secretion|positive regulation of GDNF production yaf 2012-03-08T03:44:47Z biological_process owl:Class GO:0018292 biolink:NamedThing molybdenum incorporation via L-cysteinyl molybdopterin The incorporation of molybdenum into a protein via L-cysteinyl molybdopterin. tmpzr1t_l9r_go_relaxed.owl RESID:AA0142 biological_process owl:Class GO:0048897 biolink:NamedThing myelination of lateral line nerve axons The formation of compact myelin sheaths around the axons of a lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052912 biolink:NamedThing 23S rRNA (guanine(748)-N(1))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanine(748) in 23S rRNA = N(1)-methylguanine(748) in 23S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 23S rRNA m(1)G(748) methyltransferase activity EC:2.1.1.188|KEGG_REACTION:R07233|RHEA:42904|MetaCyc:RXN-11599 molecular_function owl:Class GO:0090169 biolink:NamedThing regulation of spindle assembly Any process that modulates the rate, frequency or extent of spindle assembly. Spindle assembly is the aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. tmpzr1t_l9r_go_relaxed.owl regulation of spindle formation tb 2009-12-11T10:17:51Z biological_process owl:Class GO:0004401 biolink:NamedThing histidinol-phosphatase activity Catalysis of the reaction: L-histidinol phosphate + H(2)O = L-histidinol + phosphate. tmpzr1t_l9r_go_relaxed.owl histidinol phosphate phosphatase activity|HPpase activity|L-histidinol phosphate phosphatase activity|histidinolphosphatase activity|histidinolphosphate phosphatase activity|L-histidinol-phosphate phosphohydrolase activity MetaCyc:HISTIDPHOS-RXN|EC:3.1.3.15|RHEA:14465|KEGG_REACTION:R03013 molecular_function owl:Class GO:0016754 biolink:NamedThing sinapoylglucose-malate O-sinapoyltransferase activity Catalysis of the reaction: (S)-malate + 1-O-sinapoyl-beta-D-glucose = D-glucose + sinapoyl (S)-malate. tmpzr1t_l9r_go_relaxed.owl 1-O-sinapoyl-beta-D-glucose:(S)-malate O-sinapoyltransferase activity|1-sinapoylglucose-L-malate sinapoyltransferase activity|sinapoylglucose:malate sinapoyltransferase activity EC:2.3.1.92|KEGG_REACTION:R03323|RHEA:12625|MetaCyc:2.3.1.92-RXN molecular_function owl:Class GO:0093001 biolink:NamedThing glycolysis from storage polysaccharide through glucose-1-phosphate The chemical reactions and pathways resulting in the breakdown of a storage polysaccharide into pyruvate through a glucose-1-phosphate intermediate, with the concomitant production of a small amount of ATP and the reduction of NAD to NADH. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002738 biolink:NamedThing positive regulation of plasmacytoid dendritic cell cytokine production Any process that activates or increases the frequency, rate, or extent of plasmacytoid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl activation of plasmacytoid dendritic cell cytokine production|stimulation of plasmacytoid dendritic cell cytokine production|upregulation of plasmacytoid dendritic cell cytokine production|up-regulation of plasmacytoid dendritic cell cytokine production|up regulation of plasmacytoid dendritic cell cytokine production biological_process owl:Class GO:0002736 biolink:NamedThing regulation of plasmacytoid dendritic cell cytokine production Any process that modulates the frequency, rate, or extent of plasmacytoid dendritic cell cytokine production. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038191 biolink:NamedThing neuropilin binding Binding to a member of the neuropilin family. tmpzr1t_l9r_go_relaxed.owl Nrp binding|neuropilin-binding|Nrp ligand bf 2013-08-01T16:11:33Z molecular_function owl:Class GO:1905530 biolink:NamedThing negative regulation of uracil import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of uracil import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl vw 2016-10-05T21:03:48Z biological_process owl:Class GO:0034871 biolink:NamedThing 1-hydroxy-4,4-dimethylpentan-3-one dehydrogenase activity Catalysis of the reaction: 1-hydroxy-4,4-dimethylpentan-3-one = 4,4-dimethyl-3-oxopentanal + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1308 molecular_function owl:Class GO:0031366 biolink:NamedThing N-terminal peptidyl-asparagine deamination The removal of an amino group from the side chain of an N-terminal asparagine residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031364 biolink:NamedThing N-terminal protein amino acid deamination, from side chain The removal of an amino group from the side chain of an N-terminal asparagine or glutamine residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035136 biolink:NamedThing forelimb morphogenesis The process in which the anatomical structures of the forelimb are generated and organized. The forelimbs are the front limbs of an animal, e.g. the arms of a human. tmpzr1t_l9r_go_relaxed.owl arm morphogenesis GO:0035140 biological_process owl:Class GO:0071140 biolink:NamedThing resolution of mitotic recombination intermediates The cleavage and rejoining of intermediates, mitotic recombination to produce two intact molecules in which genetic material has been exchanged. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-16T12:06:05Z biological_process owl:Class GO:0102631 biolink:NamedThing caffeoylglucose 3-O-methyltransferase activity Catalysis of the reaction: 1-O-caffeoyl-beta-D-glucose + S-adenosyl-L-methionine <=> 1-O-feruloyl-beta-D-glucose + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15537 molecular_function owl:Class GO:0050643 biolink:NamedThing 10-deacetylbaccatin III 10-O-acetyltransferase activity Catalysis of the reaction: 10-deacetylbaccatin III + acetyl-CoA = baccatin III + CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:taxan-10beta-ol O-acetyltransferase EC:2.3.1.167|KEGG_REACTION:R06311|RHEA:20137|MetaCyc:2.3.1.167-RXN molecular_function owl:Class GO:0044836 biolink:NamedThing D-xylose fermentation The anaerobic enzymatic conversion of D-xylose to ethanol, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-19T16:14:57Z biological_process owl:Class GO:0098867 biolink:NamedThing intramembranous bone growth The increase in size or mass of an intramembranous bone that contributes to the shaping of the bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098868 biolink:NamedThing bone growth The increase in size or mass of a bone that contributes to the shaping of that bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032711 biolink:NamedThing negative regulation of interleukin-27 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-27 production. tmpzr1t_l9r_go_relaxed.owl inhibition of interleukin-27 production|negative regulation of IL-27 production|down-regulation of interleukin-27 production|down regulation of interleukin-27 production|downregulation of interleukin-27 production|negative regulation of interleukin-27 biosynthetic process GO:0045535 biological_process owl:Class GO:0008750 biolink:NamedThing NAD(P)+ transhydrogenase (AB-specific) activity Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+. tmpzr1t_l9r_go_relaxed.owl NADPH:NAD+ oxidoreductase (AB-specific)|transhydrogenase activity|pyridine nucleotide transhydrogenase activity|NAD(P) transhydrogenase (AB-specific) activity EC:1.6.1.2|MetaCyc:1.6.1.2-RXN molecular_function owl:Class GO:0015107 biolink:NamedThing chlorate transmembrane transporter activity Enables the transfer of chlorate, ClO3-, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901809 biolink:NamedThing capsanthin biosynthetic process The chemical reactions and pathways resulting in the formation of capsanthin. tmpzr1t_l9r_go_relaxed.owl capsanthin anabolism|capsanthin biosynthesis|capsanthin synthesis|capsanthin formation yaf 2013-01-22T10:21:50Z biological_process owl:Class GO:0039554 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of host MDA-5 activity Any process in which a virus stops, prevents, or reduces a host viral-induced cytoplasmic pattern recognition receptor signaling pathway by inhibiting the activity of MDA-5 (also known as IFIH1). The cytoplasmic pattern recognition receptor MDA-5 detects dsRNA synthesized during active viral replication and triggers a signaling pathway to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host MDA-5 signalling pathway|Inhibition of host MDA5 by virus|suppression by virus of host IFIH1 signaling pathway|suppression by virus of host MDA-5 activity|inhibition of host IFIH1/MDA5 by virus|suppression by virus of host MDA-5 signaling pathway|inhibition by virus of host MDA-5 signaling https://github.com/geneontology/go-ontology/issues/21984 bf 2012-03-09T03:03:49Z GO:0039539 biological_process owl:Class GO:0033838 biolink:NamedThing flavonol-3-O-glucoside glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a flavonol 3-O-beta-D-glucoside = UDP + a flavonol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:flavonol-3-O-glucoside 2''-O-beta-D-glucosyltransferase activity MetaCyc:2.4.1.239-RXN|EC:2.4.1.239|RHEA:18893 molecular_function owl:Class GO:0140533 biolink:NamedThing suppression of host RNAi-mediated antiviral immune response Any process in which a symbiont stops, prevents, or reduces the rate or extent of the host's RNAi-mediated antiviral immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression of host RNAi-mediated gene silencing|suppression of host RNAi-mediated antiviral immunity https://github.com/geneontology/go-ontology/issues/19958 pg 2020-10-28T07:55:27Z biological_process owl:Class GO:0085014 biolink:NamedThing dormancy entry of symbiont in host Entry into a dormant state of the symbiont within the host organism. tmpzr1t_l9r_go_relaxed.owl jl 2010-05-19T02:33:26Z biological_process owl:Class GO:0047128 biolink:NamedThing 1,2-dehydroreticulinium reductase (NADPH) activity Catalysis of the reaction: (R)-reticuline + NADP(+) = 1,2-dehydroreticuline + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (R)-reticuline:NADP+ oxidoreductase activity|1,2-dehydroreticulinium ion reductase activity RHEA:17569|KEGG_REACTION:R04695|MetaCyc:1.5.1.27-RXN|EC:1.5.1.27 molecular_function owl:Class GO:0060383 biolink:NamedThing positive regulation of DNA strand elongation Any process that increases the rate, frequency or extent of DNA strand elongation. DNA strand elongation is the DNA metabolic process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060388 biolink:NamedThing vitelline envelope A glycoprotein-based structure that lies outside the plasma membrane and surrounds the egg before fertilization. tmpzr1t_l9r_go_relaxed.owl fertilization membrane cellular_component owl:Class GO:0002133 biolink:NamedThing polycystin complex A stable heterodimeric complex composed of polycystin-1 and polycystin-2. tmpzr1t_l9r_go_relaxed.owl Different forms of the complex differing in type of N-glycosylation of polycystin-1 can exist (endoglycosidase sensitive and endoglycosidase resistant). cellular_component owl:Class GO:1905163 biolink:NamedThing negative regulation of phagosome maturation Any process that stops, prevents or reduces the frequency, rate or extent of phagosome maturation. tmpzr1t_l9r_go_relaxed.owl down regulation of phagosome maturation|inhibition of phagosome maturation|downregulation of phagosome maturation|down-regulation of phagosome maturation bf 2016-04-25T16:28:11Z biological_process owl:Class GO:0102439 biolink:NamedThing 3',4',5'-trimethylmyricetin 7-O-methyltransferase activity Catalysis of the reaction: 3',4',5'-trimethylmyricetin + S-adenosyl-L-methionine <=> 7,3',4',5'-tetramethylmyricetin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13916 molecular_function owl:Class GO:0008880 biolink:NamedThing glucuronate isomerase activity Catalysis of the reaction: D-glucuronate = D-fructuronate. tmpzr1t_l9r_go_relaxed.owl uronic isomerase activity|D-glucuronate aldose-ketose-isomerase activity|uronic acid isomerase activity|D-glucuronate ketol-isomerase activity|D-glucuronate isomerase activity|uronate isomerase activity MetaCyc:GLUCUROISOM-RXN|EC:5.3.1.12|RHEA:13049 molecular_function owl:Class GO:0005595 biolink:NamedThing collagen type XII trimer A collagen homotrimer of alpha1(XII) chains; type XII collagen triple helices may link sheet-forming or fibrillar collagens to other structures. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070574 biolink:NamedThing cadmium ion transmembrane transport A process in which a cadmium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl transmembrane cadmium transport|cadmium ion membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. mah 2009-04-20T03:31:47Z biological_process owl:Class GO:0022629 biolink:NamedThing chloroplast small ribosomal subunit The small subunit of a ribosome contained within a chloroplast. tmpzr1t_l9r_go_relaxed.owl chloroplast ribosomal small subunit complex|chloroplast ribosomal SSU complex cellular_component owl:Class GO:0097455 biolink:NamedThing spiny bracelet of Nageotte Paranodal terminations of Schwann cells that do not directly contact the paranodal axon membrane. Usually found in thicker myelin. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao937871668 pr 2012-12-19T13:02:33Z cellular_component owl:Class GO:0003247 biolink:NamedThing post-embryonic cardiac muscle cell growth involved in heart morphogenesis The growth of a cardiac muscle cell during the postembryonic period that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:50:29Z biological_process owl:Class GO:2000636 biolink:NamedThing positive regulation of primary miRNA processing Any process that activates or increases the frequency, rate or extent of primary microRNA processing. tmpzr1t_l9r_go_relaxed.owl positive regulation of pri-miRNA processing|positive regulation of primary microRNA processing dph 2011-04-18T03:50:56Z biological_process owl:Class GO:0080128 biolink:NamedThing anther septum development The process whose specific outcome is the progression of the anther septum over time, from its formation to the mature structure. The anther septum is a thin partition or stretch of cells that are present in the anther dehiscence zone. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-28T04:41:16Z biological_process owl:Class GO:0090452 biolink:NamedThing lithium ion transmembrane transport The directed movement of lithium ions across a membrane. tmpzr1t_l9r_go_relaxed.owl lithium ion uptake|lithium ion import tb 2012-09-24T14:04:41Z biological_process owl:Class GO:0044874 biolink:NamedThing lipoprotein localization to outer membrane A process in which a lipoprotein is transported to, or maintained in, a specific location in an outer membrane. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-25T16:30:30Z biological_process owl:Class GO:0005476 biolink:NamedThing carnitine:acyl carnitine antiporter activity Catalysis of the reaction: carnitine (mitochondrial) + acyl carnitine (cytoplasm) = carnitine (cytoplasm) + acyl carnitine (mitochondrial). tmpzr1t_l9r_go_relaxed.owl fatty acyl carnitine carrier|carnitine/acyl carnitine carrier activity|carnitine:acyl carnitine carrier activity molecular_function owl:Class GO:0032523 biolink:NamedThing silicon efflux transmembrane transporter activity Enables the transfer of silicon from the inside of the cell to the outside of the cell across a membrane. tmpzr1t_l9r_go_relaxed.owl silicon efflux transporter activity molecular_function owl:Class GO:0140615 biolink:NamedThing ATP-dependent citrate lyase complex A protein complex that catalyzes the cleavage of citrate into oxaloacetate and acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl citrate synthase complex|citrate lyase complex https://github.com/geneontology/go-ontology/issues/21028 pg 2021-03-08T14:15:18Z cellular_component owl:Class GO:2000596 biolink:NamedThing negative regulation of optic nerve formation Any process that stops, prevents or reduces the frequency, rate or extent of optic nerve formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of CN II formation|negative regulation of CN II biosynthesis yaf 2011-04-11T03:41:35Z biological_process owl:Class GO:0044673 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase complex A heterodimer which catalyses the reaction of 5-amino-6-(D-ribitylamino)uracil and 4-hydroxyphenylpyruvate to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO), an intermediate of coenzyme F420. tmpzr1t_l9r_go_relaxed.owl FO-synthase complex jl 2012-08-09T10:49:05Z cellular_component owl:Class GO:0032492 biolink:NamedThing detection of molecule of oomycetes origin The series of events in which a stimulus from a molecule of oomycetes origin is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of oomycetes associated molecule biological_process owl:Class GO:0006301 biolink:NamedThing postreplication repair The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. tmpzr1t_l9r_go_relaxed.owl postreplication DNA repair Wikipedia:Postreplication_repair biological_process owl:Class GO:0000951 biolink:NamedThing methionine catabolic process to 3-methylthiopropanol The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When methionine is used as the substrate, 3-methylthiopropanol is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990269 biolink:NamedThing RNA polymerase II C-terminal domain phosphoserine binding Binding to phosphorylated serine residues in the C-terminal domain of RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl RNAP II C-terminal domain phosphoserine binding|RNA Pol II C-terminal domain phosphoserine binding tb 2014-01-11T00:34:59Z molecular_function owl:Class GO:0099122 biolink:NamedThing RNA polymerase II C-terminal domain binding Binding to the C-terminal domain (CTD) of the largest subunit of RNA polymerase II. The CTD is comprised of repeats of a heptapeptide with the consensus sequence YSPTSPS. The number of repeats varies with the species and a minimum number of repeats is required for RNAP II function. tmpzr1t_l9r_go_relaxed.owl RNAP II C-terminal binding molecular_function owl:Class GO:0018116 biolink:NamedThing peptidyl-lysine adenylylation The adenylylation of peptidyl-lysine to form peptidyl-N6-(phospho-5'-adenosine)-L-lysine. tmpzr1t_l9r_go_relaxed.owl peptidyl-lysine adenylation RESID:AA0227 biological_process owl:Class GO:0030774 biolink:NamedThing anthranilate N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + anthranilate = N-methylanthranilate + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl anthranilic acid N-methyltransferase activity|S-adenosyl-L-methionine:anthranilate N-methyltransferase activity KEGG_REACTION:R00984|MetaCyc:ANTHRANILATE-N-METHYLTRANSFERASE-RXN|RHEA:12180|EC:2.1.1.111 molecular_function owl:Class GO:0120063 biolink:NamedThing stomach smooth muscle contraction A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs throughout the length of the stomach. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T22:20:16Z biological_process owl:Class GO:0004798 biolink:NamedThing thymidylate kinase activity Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl thymidine 5'-monophosphate kinase activity|dTMP kinase activity|thymidylic kinase activity|thymidylate monophosphate kinase activity|ATP:dTMP phosphotransferase activity|deoxythymidine 5'-monophosphate kinase activity|thymidylic acid kinase activity|thymidine monophosphate kinase activity|TMPK activity EC:2.7.4.9|MetaCyc:DTMPKI-RXN|RHEA:13517 molecular_function owl:Class GO:0033517 biolink:NamedThing myo-inositol hexakisphosphate metabolic process The chemical reactions and pathways involving phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. tmpzr1t_l9r_go_relaxed.owl phytate metabolic process|myo-inositol hexakisphosphate metabolism|phytate metabolism biological_process owl:Class GO:0043184 biolink:NamedThing vascular endothelial growth factor receptor 2 binding Binding to a vascular endothelial growth factor receptor 2. tmpzr1t_l9r_go_relaxed.owl kinase domain region binding|VEGFR 2 binding|KDR binding|Flk-1 binding|VEGF receptor 2 binding molecular_function owl:Class GO:0016009 biolink:NamedThing minor mitochondrial derivative The smaller of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20737 cellular_component owl:Class GO:0120147 biolink:NamedThing Formylglycine-generating oxidase activity Catalysis of the reaction: A [sulfatase]-L-cysteine + O(2) + 2 a thiol = a [sulfatase]-3-oxo-L-alanine + hydrogen sulfide + a disulfide + H(2)O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-16226|RHEA:51152|EC:1.8.3.7 krc 2018-04-06T15:38:52Z molecular_function owl:Class GO:0034854 biolink:NamedThing 4,4-dimethyl-3-oxopentanoate decarboxylase activity Catalysis of the reaction: 4,4-dimethyl-3-oxopentanoate + H+ = 3,3-dimethyl-2-butanone + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1280 molecular_function owl:Class GO:0019866 biolink:NamedThing organelle inner membrane The inner, i.e. lumen-facing, lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. tmpzr1t_l9r_go_relaxed.owl See also the cellular component term 'outer membrane ; GO:0019867'. cellular_component owl:Class GO:0000346 biolink:NamedThing transcription export complex The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans. tmpzr1t_l9r_go_relaxed.owl TREX complex cellular_component owl:Class GO:0048161 biolink:NamedThing double layer follicle stage The stage in oogenesis when a double layer of distinct follicle cells surrounds the oocyte. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 4 biological_process owl:Class GO:0102561 biolink:NamedThing D-ribose 2,5-bisphosphate 2-phosphohydrolase activity Catalysis of the reaction: H2O + D-ribofuranose 2,5-bisphosphate <=> hydrogenphosphate + D-ribofuranose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:41616|EC:3.1.4.57|MetaCyc:RXN-14996 molecular_function owl:Class GO:0015913 biolink:NamedThing short-chain fatty acid import The directed movement of short-chain fatty acids into a cell or organelle. Short-chain fatty acids are fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short-chain fatty acid uptake biological_process owl:Class GO:0102127 biolink:NamedThing 8-oxoguanine deaminase activity Catalysis of the reaction: H+ + 7,8-dihydro-8-oxoguanine + H2O <=> 7,9-dihydro-1H-purine-2,6,8(3H)-trione + ammonium. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11455|EC:3.5.4.32|RHEA:32067 molecular_function owl:Class GO:0018446 biolink:NamedThing pinocarveol dehydrogenase activity Catalysis of the reaction: pinocarveol = pinocarvone + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0717 molecular_function owl:Class GO:0031265 biolink:NamedThing CD95 death-inducing signaling complex A protein complex formed upon binding of Fas/CD95/APO-1 to its ligand. The complex includes FADD/Mort1, procaspase-8/10 and c-FLIP in addition to the ligand-bound receptor. tmpzr1t_l9r_go_relaxed.owl Fas death-inducing signaling complex|CD95 DISC|CD95 death-inducing signalling complex cellular_component owl:Class GO:0022028 biolink:NamedThing tangential migration from the subventricular zone to the olfactory bulb The migration of cells in the telencephalon from the subventricular zone to the olfactory bulb in which cells move orthogonally to the direction of radial migration and do not use radial glial cell processes as substrates for migration. tmpzr1t_l9r_go_relaxed.owl rostral migratory stream migration biological_process owl:Class GO:0055096 biolink:NamedThing low-density lipoprotein particle mediated signaling A series of molecular signals mediated by the detection of low-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein particle mediated signal transduction|low-density lipoprotein mediated signalling|low-density lipoprotein particle-mediated signaling biological_process owl:Class GO:0055095 biolink:NamedThing lipoprotein particle mediated signaling A series of molecular signals mediated by the detection of a lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl lipoprotein particle-mediated signaling|lipoprotein mediated signalling|lipoprotein particle mediated signal transduction biological_process owl:Class GO:0034803 biolink:NamedThing 3-hydroxy-2-naphthoate 2,3-dioxygenase activity Catalysis of the reaction: 3-hydroxy-2-naphthoate + O2 = (3E)-3-[(6Z)-6-(carboxymethylene)cyclohexa-2,4-dien-1-ylidene]-2-oxopropanate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1104|EC:1.13.11.- molecular_function owl:Class GO:0005157 biolink:NamedThing macrophage colony-stimulating factor receptor binding Binding to a macrophage colony-stimulating factor receptor. tmpzr1t_l9r_go_relaxed.owl M-CSF receptor binding|macrophage colony stimulating factor receptor binding|macrophage colony-stimulating factor receptor ligand molecular_function owl:Class GO:0046729 biolink:NamedThing viral procapsid A stable empty viral capsid produced during the assembly of viruses. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990055 biolink:NamedThing phenylacetaldehyde synthase activity Catalyzes the reaction: L-phenylalanine + O2 + H2O -> phenylacetaldehyde + ammonia + hydrogen peroxide + CO2. tmpzr1t_l9r_go_relaxed.owl aromatic aldehyde synthase RHEA:55532|EC:4.1.1.109 tb 2013-02-25T20:22:35Z molecular_function owl:Class GO:1990960 biolink:NamedThing basophil homeostasis The process of regulating the proliferation and elimination of basophils such that the total number of basophils within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl basophilic leucocyte homeostasis sl 2016-06-06T22:38:22Z biological_process owl:Class GO:0001681 biolink:NamedThing sialate O-acetylesterase activity Catalysis of the reaction: N-acetyl-O-acetylneuraminate (free or glycosidically bound) + H2O = N-acetylneuraminate + acetate. tmpzr1t_l9r_go_relaxed.owl N-acetylneuraminate acetyltransferase activity|sialate 9(4)-O-acetylesterase activity|N-acyl-O-acetylneuraminate O-acetylhydrolase activity MetaCyc:SIALATE-O-ACETYLESTERASE-RXN|EC:3.1.1.53 molecular_function owl:Class GO:0008126 biolink:NamedThing acetylesterase activity Catalysis of the reaction: an acetic ester + H2O = an alcohol + acetate. tmpzr1t_l9r_go_relaxed.owl acetic ester hydrolase activity|citrus acetylesterase|p-nitrophenyl acetate esterase|C-esterase (in animal tissues)|acetic-ester acetylhydrolase activity|chloroesterase EC:3.1.1.6|RHEA:12957|UM-BBD_reactionID:r0170|MetaCyc:ACETYLESTERASE-RXN molecular_function owl:Class GO:0017098 biolink:NamedThing sulfonylurea receptor binding Binding to a sulfonylurea receptor, a regulatory subunit of the ATP-sensitive potassium ion channel. tmpzr1t_l9r_go_relaxed.owl sulphonylurea receptor binding|sulfonylurea receptor ligand molecular_function owl:Class GO:0006009 biolink:NamedThing glucose 1-phosphate phosphorylation The process of introducing a phosphate group into glucose 1-phosphate to produce glucose bisphosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990869 biolink:NamedThing cellular response to chemokine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemokine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-09-25T16:39:55Z biological_process owl:Class GO:0061726 biolink:NamedThing mitochondrion disassembly The disaggregation of a mitochondrion into its constituent components. tmpzr1t_l9r_go_relaxed.owl mitochondrion degradation dph 2015-07-08T13:59:16Z biological_process owl:Class GO:0010625 biolink:NamedThing positive regulation of Schwann cell proliferation Any process that increases the frequency or rate of the multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106004 biolink:NamedThing tRNA (guanine-N7)-methylation The process whereby a guanine in a tRNA is methylated at the N7 position of guanine. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-07T18:17:38Z biological_process owl:Class GO:0047354 biolink:NamedThing sphingosine cholinephosphotransferase activity Catalysis of the reaction: CDP-choline + sphingosine = CMP + H(+) + sphingosyl-phosphocholine. tmpzr1t_l9r_go_relaxed.owl cytidine diphosphocholine-sphingosine cholinephosphotransferase activity|sphingosine choline phosphotransferase activity|CDP-choline:sphingosine cholinephosphotransferase activity|CDP-choline-sphingosine cholinephosphotransferase activity|phosphorylcholine-sphingosine transferase activity EC:2.7.8.10|MetaCyc:2.7.8.10-RXN|KEGG_REACTION:R01929|RHEA:21224 molecular_function owl:Class GO:0099037 biolink:NamedThing anchored component of presynaptic endosome membrane The component of the presynaptic endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047356 biolink:NamedThing CDP-ribitol ribitolphosphotransferase activity Catalysis of the reaction: ribitol phosphate(n) + CDP-ribitol = ribitol phosphate(n+1) + CMP. tmpzr1t_l9r_go_relaxed.owl teichoate synthetase activity|teichoic-acid synthase activity|CDPribitol ribitolphosphotransferase activity|poly(ribitol phosphate) synthetase activity|polyribitol phosphate synthetase activity|CDP-ribitol:poly(ribitol phosphate) ribitolphosphotransferase activity|polyribitol phosphate polymerase activity|teichoate synthase activity RHEA:13353|EC:2.7.8.14|MetaCyc:2.7.8.14-RXN molecular_function owl:Class GO:1903527 biolink:NamedThing positive regulation of membrane tubulation Any process that activates or increases the frequency, rate or extent of membrane tubulation. tmpzr1t_l9r_go_relaxed.owl up regulation of plasma membrane tubulation|up regulation of membrane tubulation|positive regulation of plasma membrane tubulation|activation of membrane tubulation|up-regulation of plasma membrane tubulation|up-regulation of membrane tubulation|upregulation of plasma membrane tubulation|upregulation of membrane tubulation|activation of plasma membrane tubulation pm 2014-10-07T12:52:53Z biological_process owl:Class GO:0102607 biolink:NamedThing 3beta-hydroxy-12,15-cassadiene-11-one 2-hydroxylase activity Catalysis of the reaction: 3beta-hydroxy-12,15-cassadiene-11-one + NADPH + O2 + H+ <=> 2beta,3beta-dihydroxy-12,15-cassadiene-11-one + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15433 molecular_function owl:Class GO:0039649 biolink:NamedThing modulation by virus of host ubiquitin-protein ligase activity The process in which a virus effects a change in host ubiquitin-protein ligase activity. Ubiquitin-protein ligase activity catalyzes the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine. tmpzr1t_l9r_go_relaxed.owl modulation of host E3 ubiquitin ligases by virus bf 2012-10-09T15:26:56Z biological_process owl:Class GO:0008058 biolink:NamedThing ocellus pigment granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of intracellular pigment storage granules in the ocellus. tmpzr1t_l9r_go_relaxed.owl ocellus pigment granule organization and biogenesis|ocellus pigment granule organisation biological_process owl:Class GO:0051721 biolink:NamedThing protein phosphatase 2A binding Binding to protein phosphatase 2A. tmpzr1t_l9r_go_relaxed.owl protein phosphatase 2 binding molecular_function owl:Class GO:0045549 biolink:NamedThing 9-cis-epoxycarotenoid dioxygenase activity Catalysis of the reactions: a 9-cis-epoxycarotenoid + O2 = 2-cis,4-trans-xanthoxin + a 12'-apo-carotenal; 9-cis-violaxanthin + O2 = 2-cis,4-trans-xanthoxin + (3S,5R,6S)-5,6-epoxy-3-hydroxy-5,6-dihydro-12'-apo-beta-caroten-12'-al; and 9'-cis-neoxanthin + O2 = 2-cis,4-trans-xanthoxin + (3S,5R,6R)-5,6-dihydroxy-6,7-didehydro-5,6-dihydro-12'-apo-beta-caroten-12'-al. tmpzr1t_l9r_go_relaxed.owl neoxanthin cleavage enzyme|AtNCED3|9-cis-epoxycarotenoid 11,12-dioxygenase activity|NCED|nine-cis-epoxycarotenoid dioxygenase activity|PvNCED1|VP14 EC:1.13.11.51 molecular_function owl:Class GO:0140355 biolink:NamedThing cargo receptor ligand activity The activity of a gene product that interacts with a cargo receptor and initiates endocytosis. tmpzr1t_l9r_go_relaxed.owl cargo pg 2019-05-27T09:56:50Z molecular_function owl:Class GO:0060421 biolink:NamedThing positive regulation of heart growth Any process that increases the rate or extent of heart growth. Heart growth is the increase in size or mass of the heart. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034567 biolink:NamedThing chromate reductase activity Catalysis of the reaction: chromate = chromium (III). tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0884 molecular_function owl:Class GO:0035210 biolink:NamedThing prepupal development The process whose specific outcome is the progression of the prepupa over time, from its formation to the mature structure. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'prepupa ; FBbt:00002952'. biological_process owl:Class GO:0015383 biolink:NamedThing sulfate:bicarbonate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + bicarbonate(in) = sulfate(in) + bicarbonate(out). tmpzr1t_l9r_go_relaxed.owl sulphate:bicarbonate antiporter activity molecular_function owl:Class GO:0004998 biolink:NamedThing transferrin receptor activity Combining selectively with transferrin, and delivering transferrin into the cell via endocytosis. Transferrin is a major iron carrier protein in vertebrates. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002511 biolink:NamedThing central B cell receptor editing Receptor editing occurring in B cells in the bone marrow. tmpzr1t_l9r_go_relaxed.owl central B-cell receptor editing|central B lymphocyte receptor editing|central B-lymphocyte receptor editing biological_process owl:Class GO:0046990 biolink:NamedThing N-hydroxyarylamine O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an N-hydroxyarylamine = CoA + an N-acetoxyarylamine. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:N-hydroxyarylamine O-acetyltransferase activity|arylhydroxamate N,O-acetyltransferase activity|N-hydroxy-2-aminofluorene-O-acetyltransferase activity EC:2.3.1.118|RHEA:20277|MetaCyc:2.3.1.118-RXN molecular_function owl:Class GO:0003896 biolink:NamedThing DNA primase activity Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.101 GO:0003898|GO:0003897 molecular_function owl:Class GO:0047056 biolink:NamedThing (S)-canadine synthase activity Catalysis of the reaction: (S)-tetrahydrocolumbamine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-canadine + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl (S)-tetrahydroberberine synthase activity|(S)-tetrahydrocolumbamine oxidase (methylenedioxy-bridge-forming) activity https://github.com/geneontology/go-ontology/issues/21133 RHEA:21456|MetaCyc:1.1.3.36-RXN|KEGG_REACTION:R04400|EC:1.14.19.68 molecular_function owl:Class GO:0009550 biolink:NamedThing primary plasmodesma A plasmodesma that consists of a simple, single channel; found predominantly in young tissue and formed as a function of cell plate formation during cytokinesis. tmpzr1t_l9r_go_relaxed.owl simple plasmodesma cellular_component owl:Class GO:0070285 biolink:NamedThing pigment cell development The process whose specific outcome is the progression of a pigment cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a pigment cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017122 biolink:NamedThing protein N-acetylglucosaminyltransferase complex A protein complex capable of protein N-acetylglucosaminyltransferase activity, the addition of nucleotide-activated sugars onto the polypeptide according to reaction: UDP-N-acetyl-D-glucosamine + protein = UDP + 4-N-(N-acetyl-D-glucosaminyl)-protein. The complex has different compositions in different species: In mammals it is often a homotrimer, in bacteria a heterotetramer of 2 different subunits. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase|O-GlcNAc transferase complex https://github.com/geneontology/go-ontology/issues/16994 cellular_component owl:Class GO:0034455 biolink:NamedThing t-UTP complex A protein complex that forms a subcomplex of the 90S preribosome and is required for the subsequent assembly of the rest of the preribosome. In S. cerevisiae, it is composed of Utp5p, Utp4p, Nan1p, Utp8p, Utp9p, Utp10 and Utp15p. tmpzr1t_l9r_go_relaxed.owl Nan1p-containing subcomplex of 90S preribosome Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0034265 biolink:NamedThing isopentenyl adenine biosynthetic process The chemical reactions and pathways resulting in the formation of the cytokinin 6-isopentenyladenine. tmpzr1t_l9r_go_relaxed.owl isopentenyl adenine formation|isopentenyl adenine anabolism|isopentenyladenine biosynthetic process|isopentenyl adenine synthesis|isopentenyl adenine biosynthesis biological_process owl:Class GO:0099142 biolink:NamedThing intracellularly ATP-gated ion channel activity Enables the transmembrane transfer of an ion by a channel that opens when ATP has been bound by the channel complex or one of its constituent parts on the intracellular side of the plasma membrane. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008867 biolink:NamedThing galactarate dehydratase activity Catalysis of the reaction: galactarate = 5-dehydro-4-deoxy-D-glucarate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-galactarate hydro-lyase (5-dehydro-4-deoxy-D-glucarate-forming)|D-galactarate hydro-lyase activity MetaCyc:GALACTARDEHYDRA-RXN|KEGG_REACTION:R05608|RHEA:16005|EC:4.2.1.42 molecular_function owl:Class GO:1905375 biolink:NamedThing cellular response to homocysteine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a homocysteine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to Hcy|cellular response to 2-amino-4-mercaptobutyric acid|cellular response to 2-amino-4-sulfanylbutanoic acid sl 2016-08-17T20:18:00Z biological_process owl:Class GO:0106272 biolink:NamedThing protein localization to ERGIC A process in which a protein is transported to, or maintained in, a location within the endoplasmic reticulum-Golgi intermediate compartment (ERGIC). tmpzr1t_l9r_go_relaxed.owl hjd 2020-07-01T17:04:35Z biological_process owl:Class GO:0050023 biolink:NamedThing L-fuconate dehydratase activity Catalysis of the reaction: L-fuconate = 2-dehydro-3-deoxy-L-fuconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-fuconate hydratase activity|L-fuconate hydro-lyase (2-dehydro-3-deoxy-L-fuconate-forming)|L-fuconate hydro-lyase activity MetaCyc:L-FUCONATE-HYDRATASE-RXN|RHEA:22772|EC:4.2.1.68|KEGG_REACTION:R03688 molecular_function owl:Class GO:0001118 biolink:NamedThing transcription ternary complex disassembly The disaggregation of a transcription ternary complex, composed of RNA polymerase, template DNA, and an RNA transcript, into its constituent components. tmpzr1t_l9r_go_relaxed.owl transcription protein-DNA-RNA complex disassembly krc 2010-12-03T04:11:34Z biological_process owl:Class GO:0003416 biolink:NamedThing endochondral bone growth The increase in size or mass of an endochondral bone that contributes to the shaping of the bone. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-22T08:52:55Z biological_process owl:Class GO:0043882 biolink:NamedThing malate:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: malate(out) + Na+(out) = malate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl malate:sodium cotransporter activity|sodium-dependent malate transporter|malate:Na+ symporter activity|malate/sodium symporter activity|malate-sodium symporter activity|malate/sodium cotransporter activity|sodium/malate symporter activity|malate Na(+) symporter activity|sodium:malate symporter activity|Na(+)-malate symporter activity|Na+:malate symporter activity molecular_function owl:Class GO:0047413 biolink:NamedThing N(alpha)-benzyloxycarbonylleucine hydrolase activity Catalysis of the reaction: N-benzyloxycarbonyl-L-leucine + H(2)O + H(+) = L-leucine + benzyl alcohol + CO(2). tmpzr1t_l9r_go_relaxed.owl nalpha-benzyloxycarbonylleucine hydrolase activity|nalpha-benzyloxycarbonyl amino acid urethane hydrolase IV|nalpha-benzyloxycarbonyl-L-leucine urethanehydrolase activity|benzyloxycarbonylleucine hydrolase activity|alpha-N-benzyloxycarbonyl-L-leucine urethanehydrolase activity MetaCyc:3.5.1.64-RXN|EC:3.5.1.64|KEGG_REACTION:R02552|RHEA:18901 molecular_function owl:Class GO:0008486 biolink:NamedThing diphosphoinositol-polyphosphate diphosphatase activity Catalysis of the reaction: diphospho-myo-inositol polyphosphate + H2O = myo-inositol polyphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl diphosphoinositol-polyphosphate phosphohydrolase activity|DIPP activity|diphosphoinositol polyphosphate phosphohydrolase activity|diphospho-myo-inositol-polyphosphate diphosphohydrolase activity EC:3.6.1.52|KEGG_REACTION:R05777|MetaCyc:3.6.1.52-RXN molecular_function owl:Class GO:0000334 biolink:NamedThing 3-hydroxyanthranilate 3,4-dioxygenase activity Catalysis of the reaction: 3-hydroxyanthranilate + O(2) = cis,cis-2-amino-3-(3-oxoprop-1-enyl)but-2-enedioate + H(+). tmpzr1t_l9r_go_relaxed.owl 3-hydroxyanthranilic acid dioxygenase activity|3-hydroxyanthranilate:oxygen 3,4-oxidoreductase (decyclizing)|3HAO|3-hydroxyanthranilic acid oxygenase activity|3-hydroxyanthranilate oxygenase activity|3-hydroxyanthranilic oxygenase activity RHEA:17953|MetaCyc:1.13.11.6-RXN|Reactome:R-HSA-71218|KEGG_REACTION:R02665|UM-BBD_reactionID:r1027|EC:1.13.11.6 molecular_function owl:Class GO:0102365 biolink:NamedThing taxusin 2-alpha-hydroxylase activity Catalysis of the reaction: taxusin + NADPH + O2 + H+ = 2-alpha-hydroxytaxusin + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13486 molecular_function owl:Class GO:0034363 biolink:NamedThing intermediate-density lipoprotein particle A triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. IDL particles are found in blood and are formed by the delipidation of very-low-density lipoprotein particles (VLDL). IDL particles are removed from blood by the liver, following binding to the APOE receptor, or are converted to low-density lipoprotein (LDL). tmpzr1t_l9r_go_relaxed.owl IDL complex|IDL particle|intermediate-density lipoprotein complex cellular_component owl:Class GO:0036246 biolink:NamedThing phytochelatin 2 import into vacuole The directed movement of phytochelatin 2 (PC2) into the vacuole. Phytochelatin 2 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=2, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond. tmpzr1t_l9r_go_relaxed.owl PC2 import into vacuole bf 2012-05-31T11:09:20Z biological_process owl:Class GO:0046547 biolink:NamedThing trans-aconitate 3-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + trans-aconitate = (E)-2-(methoxycarbonylmethyl)but-2-enedioate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(E)-prop-1-ene-1,2,3-tricarboxylate 3'-O-methyltransferase activity EC:2.1.1.145|KEGG_REACTION:R05764|RHEA:22200|MetaCyc:2.1.1.145-RXN molecular_function owl:Class GO:0000210 biolink:NamedThing NAD+ diphosphatase activity Catalysis of the reaction: NAD+ + H2O = AMP + NMN. tmpzr1t_l9r_go_relaxed.owl NAD pyrophosphatase activity|nicotinamide adenine dinucleotide pyrophosphatase activity|NAD(+) pyrophosphatase activity|NAD+ pyrophosphatase activity|NAD diphosphatase activity|NADP pyrophosphatase activity|NAD+ phosphohydrolase activity|NADH pyrophosphatase activity EC:3.6.1.22|RHEA:11800|MetaCyc:NADPYROPHOSPHAT-RXN molecular_function owl:Class GO:0003856 biolink:NamedThing 3-dehydroquinate synthase activity Catalysis of the reaction: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate. tmpzr1t_l9r_go_relaxed.owl EC:4.2.3.4|KEGG_REACTION:R03083|RHEA:21968|MetaCyc:3-DEHYDROQUINATE-SYNTHASE-RXN molecular_function owl:Class GO:0080191 biolink:NamedThing secondary thickening Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of tissue from a secondary thickening meristem. tmpzr1t_l9r_go_relaxed.owl Occurs in shoot axes in some monocotyledons such as Dracaena, and rarely in roots of monocotyledons. Distinct from primary thickening, because it is distant from and generally discontinuous with the apical meristem. dhl 2012-12-06T15:50:33Z biological_process owl:Class GO:0008302 biolink:NamedThing female germline ring canal formation, actin assembly Recruitment and organization of actin filaments in female germline ring canals. tmpzr1t_l9r_go_relaxed.owl nurse cell ring canal formation, actin assembly|ring canal formation, actin assembly|ovarian ring canal formation, actin assembly biological_process owl:Class GO:0033534 biolink:NamedThing verbascose biosynthetic process The chemical reactions and pathways resulting in the formation of verbascose, the pentasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl verbascose anabolism|verbascose synthesis|verbascose biosynthesis|verbascose formation biological_process owl:Class GO:0050846 biolink:NamedThing teichuronic acid metabolic process The chemical reactions and pathways involving teichuronic acid, a polymer containing chains of uronic acids and N-acetylglucosamine found in the cell wall, membrane or capsule of Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl teichuronic acid metabolism biological_process owl:Class GO:0018453 biolink:NamedThing 2-hydroxytetrahydrofuran dehydrogenase activity Catalysis of the reaction: 2-hydroxytetrahydrofuran = 2 H+ + 2 e- + butyrolactone. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0018 molecular_function owl:Class GO:0036189 biolink:NamedThing abieta-7,13-diene hydroxylase activity Catalysis of the reaction: abieta-7,13-diene + NADPH + H+ + O2 = abieta-7,13-dien-18-ol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl abietadiene hydroxylase RHEA:26217|EC:1.14.14.144|MetaCyc:RXN-8507|KEGG_REACTION:R06351 bf 2012-04-19T10:57:05Z molecular_function owl:Class GO:1903664 biolink:NamedThing regulation of asexual reproduction Any process that modulates the frequency, rate or extent of asexual reproduction. tmpzr1t_l9r_go_relaxed.owl pf 2014-11-26T21:13:24Z biological_process owl:Class GO:0019548 biolink:NamedThing arginine catabolic process to spermine The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including spermine. tmpzr1t_l9r_go_relaxed.owl arginine degradation to spermine|arginine breakdown to spermine MetaCyc:ARGSPECAT-PWY biological_process owl:Class GO:0070096 biolink:NamedThing mitochondrial outer membrane translocase complex assembly The aggregation, arrangement and bonding together of a set of components to form a mitochondrial outer membrane translocase complex. tmpzr1t_l9r_go_relaxed.owl TOM complex assembly|mitochondrion outer membrane translocase complex assembly biological_process owl:Class GO:0038163 biolink:NamedThing thrombopoietin-mediated signaling pathway A series of molecular signals initiated by the binding of a thrombopoietin to the thrombopoietin receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl THPO signaling pathway|thrombopoietin receptor signaling pathway|THPO/MPL signaling pathway bf 2012-05-14T02:45:53Z biological_process owl:Class GO:0070355 biolink:NamedThing synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a-complexin II complex A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, Rab3a, and complexin II (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl STX1a-STX1b-SNAP25-RAB3a-SYT1-VAMP2-CPLX2 complex|SNARE complex (STX1a, STX1b, SNAP25, RAB3a, SYT1, VAMP2, CPLX2) cellular_component owl:Class GO:1903493 biolink:NamedThing response to clopidogrel Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a clopidogrel stimulus. Clopidogrel is a is an oral, thienopyridine-class antiplatelet agent used to inhibit blood clots in coronary artery disease, peripheral vascular disease, and cerebrovascular disease. tmpzr1t_l9r_go_relaxed.owl hp 2014-09-25T11:36:42Z biological_process owl:Class GO:0097392 biolink:NamedThing chemokine (C-X-C motif) ligand 16 production The appearance of chemokine (C-X-C motif) ligand 16 (CXCL16) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CXCL16 production pr 2012-10-23T07:59:43Z biological_process owl:Class GO:0045299 biolink:NamedThing otolith mineralization The precipitation of specific crystal forms of calcium carbonate with extracellular matrix proteins in the otolith organs of the vertebrate inner ear. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071399 biolink:NamedThing cellular response to linoleic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a linoleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to linoleate mah 2009-12-11T04:40:22Z biological_process owl:Class GO:0102224 biolink:NamedThing GDP-2,4-diacetamido-2,4,6-trideoxy-alpha-D-glucopyranose hydrolase/2-epimerase activity Catalysis of the reaction: GDP-2,4-diacetamido-2,4,6-trideoxy-alpha-D-glucopyranose + H2O <=> 2,4-diacetamido-2,4,6-trideoxy-alpha-D-mannopyranose + GDP + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:46316|MetaCyc:RXN-12236 molecular_function owl:Class GO:0061667 biolink:NamedThing URM1 ligase activity Catalysis of the transfer of URM1 to a substrate protein via the reaction X-URM1 + S --> X + S-URM1, where X is either an E2 or E3 enzyme, the X-URM1 linkage is a thioester bond, and the S-URM1 linkage is an isopeptide bond between the C-terminal amino acid of URM1 and the epsilon-amino group of lysine residues in the substrate. tmpzr1t_l9r_go_relaxed.owl E3 dph 2014-11-06T14:04:43Z molecular_function owl:Class GO:0090253 biolink:NamedThing convergent extension involved in imaginal disc-derived wing morphogenesis The morphogenetic process in which the wing epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to imaginal disc-derived wing morphogenesis. tmpzr1t_l9r_go_relaxed.owl tb 2010-01-22T11:40:46Z biological_process owl:Class GO:1904850 biolink:NamedThing negative regulation of establishment of protein localization to telomere Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization to telomere. tmpzr1t_l9r_go_relaxed.owl inhibition of establishment of protein localisation to telomere|down-regulation of establishment of protein localization to telomere|down-regulation of establishment of protein localization to chromosome, telomeric region|down regulation of establishment of protein localization to chromosome, telomeric region|inhibition of establishment of protein localization to telomere|negative regulation of establishment of protein localisation to telomere|downregulation of establishment of protein localisation to telomere|negative regulation of establishment of protein localization to chromosome, telomeric region|down-regulation of establishment of protein localisation to telomere|downregulation of establishment of protein localization to chromosome, telomeric region|downregulation of establishment of protein localization to telomere|inhibition of establishment of protein localization to chromosome, telomeric region|down regulation of establishment of protein localisation to telomere|down regulation of establishment of protein localization to telomere nc 2015-12-10T15:37:51Z biological_process owl:Class GO:0090602 biolink:NamedThing sieve element enucleation The process in which nucleated precursor cells lose their nucleus as part of sieve element differentiation. The nuclear contents are released and degraded in the cytoplasm at the same time as other organelles are rearranged and the cytosol is degraded. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-05T16:25:16Z biological_process owl:Class GO:0017179 biolink:NamedThing peptidyl-diphthine metabolic process The chemical reactions and pathways involving peptidyl-diphthine, a modified histidine residue. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthine metabolism biological_process owl:Class GO:0052576 biolink:NamedThing carbohydrate storage The accumulation and maintenance in cells or tissues of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. tmpzr1t_l9r_go_relaxed.owl 2010-07-23T04:16:56Z biological_process owl:Class GO:0150094 biolink:NamedThing amyloid-beta clearance by cellular catabolic process The process in which amyloid-beta is removed from extracellular brain regions by cell surface receptor-mediated endocytosis, followed by intracellular degradation. tmpzr1t_l9r_go_relaxed.owl amyloid-beta clearance by phagocytosis bc 2018-08-16T14:38:09Z biological_process owl:Class GO:0106223 biolink:NamedThing germacrene A hydroxylase activity Catalysis of the reaction:(+)-(R)-germacrene A + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = germacra-1(10),4,11(13)-trien-12-oate + 4 H(+) + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl germacrene A alcohol dehydrogenase activity https://github.com/geneontology/go-ontology/issues/21412 EC:1.14.14.95|MetaCyc:RXN-12449|RHEA:30303 Formerly EC:1.1.1.314. hjd 2019-09-06T16:36:25Z GO:0102260 molecular_function owl:Class GO:0018729 biolink:NamedThing propionate CoA-transferase activity Catalysis of the reaction: acetyl-CoA + propanoate = acetate + propanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA transferase activity|propionate-CoA:lactoyl-CoA transferase activity|propionate coenzyme A-transferase activity|propionyl CoA:acetate CoA transferase activity|acetyl-CoA:propanoate CoA-transferase activity RHEA:23520|EC:2.8.3.1|UM-BBD_reactionID:r0087|MetaCyc:PROPIONATE-COA-TRANSFERASE-RXN molecular_function owl:Class GO:0050487 biolink:NamedThing sulfoacetaldehyde acetyltransferase activity Catalysis of the reaction: acetyl phosphate + sulfite = phosphate + sulfoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl sulphoacetaldehyde acetyltransferase activity|acetyl-phosphate:sulfite S-acetyltransferase (acyl-phosphate hydrolysing, 2-oxoethyl-forming) EC:2.3.3.15|KEGG_REACTION:R05651|MetaCyc:RXN-2364|RHEA:24204 Note that the enzyme sulfoacetaldehyde acetyltransferase also has sulfoacetaldehyde lyase activity (GO:0050312). molecular_function owl:Class GO:0030115 biolink:NamedThing S-layer A crystalline protein layer surrounding some bacteria. tmpzr1t_l9r_go_relaxed.owl Wikipedia:S-layer cellular_component owl:Class GO:0016205 biolink:NamedThing selenocysteine methyltransferase activity Catalysis of the reaction: selenocysteine + S-adenosyl-L-methionine = Se-methylselenocysteine + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11061|RHEA:26341|EC:2.1.1.280 molecular_function owl:Class GO:1903374 biolink:NamedThing subarachnoid space development The process whose specific outcome is the progression of a subarachnoid space over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl spatium subarachnoideum development|subarachnoid cavity development|cavum subarachnoideale development|cavitas subarachnoidea development|spatium leptomeningeum development https://github.com/geneontology/go-ontology/issues/21883 pr 2014-08-22T12:20:56Z biological_process owl:Class GO:0050294 biolink:NamedThing steroid sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenolic steroid = adenosine 3',5'-bisphosphate + steroid O-sulfate. tmpzr1t_l9r_go_relaxed.owl steroid sulphotransferase activity|steroid alcohol sulfotransferase|3'-phosphoadenylyl-sulfate:phenolic-steroid sulfotransferase activity Reactome:R-HSA-176631|Reactome:R-HSA-176517|Reactome:R-HSA-176521|EC:2.8.2.15|MetaCyc:STEROID-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:0018634 biolink:NamedThing alpha-pinene monooxygenase [NADH] activity Catalysis of the reaction: alpha-pinene + NADH + H+ + O2 = NAD+ + H2O + alpha-pinene oxide. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0742|EC:1.14.13.- molecular_function owl:Class GO:0106400 biolink:NamedThing double-strand break repair via transcription-associated homologous recombination A mechanism of homologous recombination and DNA repair in which transcript RNA is used as a template for DSB repair. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-11T20:48:06Z biological_process owl:Class GO:0102075 biolink:NamedThing OPC4-trans-2-enoyl-CoA hydratase activity Catalysis of the reaction: OPC4-3-hydroxyacyl-CoA <=> OPC4-trans-2-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10705 molecular_function owl:Class GO:0018968 biolink:NamedThing tetrahydrofuran metabolic process The chemical reactions and pathways involving tetrahydrofuran, a cyclic 4 carbon ether. It is one of the most polar ethers and is a widely used solvent for polar reagents. Since THF is very soluble in water and has a relatively low boiling point, significant amounts are often released into the environment, causing contamination problems. tmpzr1t_l9r_go_relaxed.owl THF metabolism|THF metabolic process|tetrahydrofuran metabolism UM-BBD_pathwayID:thf biological_process owl:Class GO:0019264 biolink:NamedThing glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. tmpzr1t_l9r_go_relaxed.owl glycine formation from serine|glycine synthesis from serine|glycine anabolism from serine MetaCyc:GLYSYN-PWY biological_process owl:Class GO:0097754 biolink:NamedThing clathrin-mediated membrane bending A membrane bending process mediated by clathrin. tmpzr1t_l9r_go_relaxed.owl pr 2017-01-25T16:38:42Z biological_process owl:Class GO:0098683 biolink:NamedThing cochlear hair cell ribbon synapse A ribbon synpase of an auditory hair cell of the cochlear. These ribbon synapses contain spherical synaptic ribbons and lack and arciform density. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T16:16:49Z cellular_component owl:Class GO:0097470 biolink:NamedThing ribbon synapse Type of synapse characterized by an electron-dense ribbon, lamella (bar) or spherical body in the presynaptic process cytoplasm. tmpzr1t_l9r_go_relaxed.owl synapsis fasciolaris NIF_Subcellular:sao1884931180 pr 2013-02-21T07:40:01Z cellular_component owl:Class GO:0106250 biolink:NamedThing DNA-binding transcription repressor activity, RNA polymerase III-specific A DNA-binding transcription factor activity that represses or decreases the transcription of specific genes sets transcribed by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20253 For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. hjd 2020-02-19T19:34:18Z molecular_function owl:Class GO:0000332 biolink:NamedThing template for synthesis of G-rich strand of telomere DNA activity Provision of the template used by reverse transcriptase to synthesize the G-rich strand of telomeric DNA. tmpzr1t_l9r_go_relaxed.owl telomerase, template|telomerase RNA Note that this term describes the activity of an RNA gene product that interacts with other nucleic acid molecules via base pairing; it should not be used to annotate proteins. molecular_function owl:Class GO:0102156 biolink:NamedThing 2,5-DHBA UDP-glucosyltransferase activity Catalysis of the reaction: 2,5-dihydroxybenzoate + UDP-alpha-D-glucose <=> 2,5-dihydroxybenzoate 5-O-beta-D-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11705 molecular_function owl:Class GO:0031752 biolink:NamedThing D5 dopamine receptor binding Binding to a D5 dopamine receptor. tmpzr1t_l9r_go_relaxed.owl D5 dopamine receptor ligand|D1B dopamine receptor binding molecular_function owl:Class GO:0017172 biolink:NamedThing cysteine dioxygenase activity Catalysis of the reaction: L-cysteine + O(2) = 3-sulfino-L-alanine + H(+). tmpzr1t_l9r_go_relaxed.owl MetaCyc:CYSTEINE-DIOXYGENASE-RXN|Reactome:R-HSA-1614645|EC:1.13.11.20|RHEA:20441|KEGG_REACTION:R00893 molecular_function owl:Class GO:0090574 biolink:NamedThing RNA polymerase V transcription repressor complex A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase V promoter. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-09T13:26:16Z cellular_component owl:Class GO:0042105 biolink:NamedThing alpha-beta T cell receptor complex A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein. tmpzr1t_l9r_go_relaxed.owl alpha-beta T lymphocyte receptor complex|alpha-beta T-cell receptor complex|alpha-beta T-lymphocyte receptor complex|alpha-beta TCR complex cellular_component owl:Class GO:0047868 biolink:NamedThing dimethylmaleate hydratase activity Catalysis of the reaction: (2R,3S)-2,3-dimethylmalate = dimethylmaleate + H(2)O. tmpzr1t_l9r_go_relaxed.owl (2R,3S)-2,3-dimethylmalate hydro-lyase (dimethylmaleate-forming)|(2R,3S)-2,3-dimethylmalate hydro-lyase activity RHEA:20253|KEGG_REACTION:R03069|MetaCyc:DIMETHYLMALEATE-HYDRATASE-RXN|EC:4.2.1.85 molecular_function owl:Class GO:0106217 biolink:NamedThing tRNA C3-cytosine methylation The process whereby a cytosine in a tRNA is methylated at position 3 of the cytosine. tmpzr1t_l9r_go_relaxed.owl hjd 2019-07-19T19:52:40Z biological_process owl:Class GO:0016340 biolink:NamedThing calcium-dependent cell-matrix adhesion The binding of a cell to the extracellular matrix via adhesion molecules that require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047955 biolink:NamedThing glycerol dehydrogenase (acceptor) activity Catalysis of the reaction: A + glycerol = AH(2) + glycerone. tmpzr1t_l9r_go_relaxed.owl glycerol:(acceptor) 1-oxidoreductase activity|glycerol:acceptor 1-oxidoreductase activity EC:1.1.99.22|MetaCyc:GLYCEROL-DEHYDROGENASE-ACCEPTOR-RXN|RHEA:17493|KEGG_REACTION:R01045 molecular_function owl:Class GO:0089716 biolink:NamedThing Pip2-Oaf1 complex A heterodimeric complex consisting of Zn(2)Cys(6) containing transcription factors Pip2 and Oaf1. It binds to the oleate response element (ORE), found in the promoters of fatty acid-inducible genes in Saccharomyces where, in the presence of oleate this bound complex activates the transcription of genes encoding peroxisomal proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102252 biolink:NamedThing cellulose 1,4-beta-cellobiosidase activity (reducing end) Catalysis of the reaction: n H2O + a cellodextrin = n beta-cellobiose, releasing cellobiose from the reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12420|EC:3.2.1.176 molecular_function owl:Class GO:0004903 biolink:NamedThing growth hormone receptor activity Combining with a growth hormone and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042649 biolink:NamedThing prothylakoid Underdeveloped thylakoids found in etioplasts, lacking competent photosynthetic membranes. Rapidly develop into mature thylakoids in the presence of light. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033973 biolink:NamedThing dCTP deaminase (dUMP-forming) activity Catalysis of the reaction: dCTP + 2 H(2)O = diphosphate + dUMP + H(+) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl dCTP aminohydrolase (dUMP-forming) activity EC:3.5.4.30|MetaCyc:3.5.4.30-RXN|RHEA:19205|KEGG_REACTION:R07307 molecular_function owl:Class GO:0035370 biolink:NamedThing UBC13-UEV1A complex A heterodimeric ubiquitin conjugating enzyme complex that catalyzes assembly of K63-linked polyubiquitin chains and is involved in NF-kappaB activation. In humans at least, the complex comprises the ubiquitin-conjugating enzyme UBC13 and ubiquitin-conjugating enzyme variant 1A (UEV1A). tmpzr1t_l9r_go_relaxed.owl bf 2010-03-11T10:53:09Z cellular_component owl:Class GO:0033825 biolink:NamedThing oligosaccharide 4-alpha-D-glucosyltransferase activity Catalysis of the transfer of the non-reducing terminal alpha-D-glucose residue from a 1,4-alpha-D-glucan to the 4-position of an alpha-D-glucan, thus bringing about the hydrolysis of oligosaccharides. tmpzr1t_l9r_go_relaxed.owl 1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity|1,4-alpha-glucan:1,4-alpha-glucan 4-alpha-glucosyltransferase activity|amylase III activity EC:2.4.1.161|MetaCyc:2.4.1.161-RXN molecular_function owl:Class GO:0051698 biolink:NamedThing saccharopine oxidase activity Catalysis of the reaction: L-saccharopine + O2 = L-2-aminoadipic 6-semialdehyde + L-glutamate + H2O2. tmpzr1t_l9r_go_relaxed.owl SAX activity molecular_function owl:Class GO:0032578 biolink:NamedThing aleurone grain membrane The lipid bilayer surrounding an aleurone grain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071990 biolink:NamedThing maintenance of protein location to spindle pole body Any process in which a protein is maintained in a specific location at the spindle pole body, and is prevented from moving elsewhere. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location in spindle pole body|maintenance of protein location at spindle pole body mah 2010-10-25T11:02:31Z biological_process owl:Class GO:0005176 biolink:NamedThing ErbB-2 class receptor binding Binding to a protein-tyrosine kinase receptor Neu/ErbB-2/HER2. tmpzr1t_l9r_go_relaxed.owl ErbB-2 class receptor ligand|Neu receptor ligand|HER2 receptor ligand|Neu receptor binding|HER2 receptor binding molecular_function owl:Class GO:0043373 biolink:NamedThing CD4-positive, alpha-beta T cell lineage commitment The process in which an immature T cell becomes committed to becoming a CD4-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl CD4-positive, alpha-beta T lymphocyte lineage commitment|CD4-positive, alpha-beta T-lymphocyte lineage commitment|CD4-positive, alpha-beta T-cell lineage commitment biological_process owl:Class GO:0061573 biolink:NamedThing actin filament bundle retrograde transport A process of actin filament bundle distribution that results in the arrangement of actin filament bundles from the periphery toward the interior of the cell. tmpzr1t_l9r_go_relaxed.owl actin filament cable retrograde transport dph 2013-08-02T11:31:04Z biological_process owl:Class GO:0033913 biolink:NamedThing glucan endo-1,2-beta-glucosidase activity Catalysis of the random hydrolysis of (1->2)-glucosidic linkages in (1->2)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl endo-(1->2)-beta-D-glucanase activity|1,2-beta-D-glucan glucanohydrolase activity|endo-1,2-beta-glucanase activity|beta-D-1,2-glucanase activity MetaCyc:3.2.1.71-RXN|EC:3.2.1.71 molecular_function owl:Class GO:0090358 biolink:NamedThing positive regulation of tryptophan metabolic process Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. tmpzr1t_l9r_go_relaxed.owl positive regulation of tryptophan metabolism tb 2010-06-29T02:38:48Z biological_process owl:Class GO:0102916 biolink:NamedThing sesamin synthase activity Catalysis of the reaction: H+ + (+)-piperitol + NADPH + O2 <=> (+)-sesamin + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8696|EC:1.14.19.74 molecular_function owl:Class GO:0010283 biolink:NamedThing pinoresinol reductase activity Catalysis of the reaction: pinoresinol + NADPH + H+ = lariciresinol + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8683|MetaCyc:RXN-8678 molecular_function owl:Class GO:0018233 biolink:NamedThing peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine The modification of peptidyl-histidine and peptidyl-cysteine to form a 2'-(S-L-cysteinyl)-L-histidine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0109 biological_process owl:Class GO:0046588 biolink:NamedThing negative regulation of calcium-dependent cell-cell adhesion Any process that stops, prevents, or reduces the frequency, rate or extent of calcium-dependent cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium-dependent cell-cell adhesion|inhibition of calcium-dependent cell-cell adhesion|down regulation of calcium-dependent cell-cell adhesion|downregulation of calcium-dependent cell-cell adhesion biological_process owl:Class GO:0072559 biolink:NamedThing NLRP3 inflammasome complex An inflammasome complex that consists of three components, NLRP3 (NALP3), PYCARD and caspase-1. It is activated upon exposure to whole pathogens, as well as a number of structurally diverse pathogen- and danger-associated molecular patterns (PAMPs and DAMPs) and environmental irritants. Whole pathogens demonstrated to activate the NLRP3 inflammasome complex include the fungi Candida albicans and Saccharomyces cerevisiae, bacteria that produce pore-forming toxins, including Listeria monocytogenes and Staphylococcus aureus, and viruses such as Sendai virus, adenovirus, and influenza virus. tmpzr1t_l9r_go_relaxed.owl NALP3 inflammasome complex mah 2011-01-27T12:04:30Z cellular_component owl:Class GO:0075219 biolink:NamedThing modulation of zoospore encystment on host Any process that modulates the frequency, rate or extent of zoospore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032794 biolink:NamedThing GTPase activating protein binding Binding to a GTPase activating protein. tmpzr1t_l9r_go_relaxed.owl GAP binding molecular_function owl:Class GO:0004063 biolink:NamedThing aryldialkylphosphatase activity Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol. tmpzr1t_l9r_go_relaxed.owl A-esterase activity|esterase B1|phosphotriesterase activity|organophosphate hydrolase activity|paraoxon hydrolase activity|esterase E4|pirimiphos-methyloxon esterase activity|paraoxon esterase activity|OPH|paraoxonase activity|organophosphorus hydrolase activity|organophosphorus acid anhydrase activity|aryltriphosphate dialkylphosphohydrolase activity|aryltriphosphatase activity|organophosphate esterase activity UM-BBD_enzymeID:e0054|RHEA:18053|MetaCyc:ARYLDIALKYLPHOSPHATASE-RXN|EC:3.1.8.1 molecular_function owl:Class GO:0023059 biolink:NamedThing positive adaptation of signaling pathway The positive regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus. tmpzr1t_l9r_go_relaxed.owl positive adaptation of signalling pathway 2010-02-16T09:30:50Z biological_process owl:Class GO:0023058 biolink:NamedThing adaptation of signaling pathway The regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus. tmpzr1t_l9r_go_relaxed.owl adaptation of signalling pathway 2010-02-16T09:30:50Z biological_process owl:Class GO:0097706 biolink:NamedThing vascular endothelial cell response to oscillatory fluid shear stress Any response to oscillatory fluid shear stress that occurs in a vascular endothelial cell. tmpzr1t_l9r_go_relaxed.owl blood vessel endothelial cell response to oscillatory fluid shear stress pr 2016-01-27T14:25:34Z biological_process owl:Class GO:0097704 biolink:NamedThing cellular response to oscillatory fluid shear stress Any response to oscillatory fluid shear stress that occurs at the level of a cell. tmpzr1t_l9r_go_relaxed.owl pr 2016-01-27T14:20:54Z biological_process owl:Class GO:0038003 biolink:NamedThing G protein-coupled opioid receptor signaling pathway The series of molecular signals generated as a consequence of an opioid receptor binding to one of its physiological ligands. tmpzr1t_l9r_go_relaxed.owl opioid receptor signalling pathway|opioid receptor signaling pathway https://github.com/geneontology/go-ontology/issues/21110 Wikipedia:Opioid_receptor bf 2011-03-03T02:00:02Z biological_process owl:Class GO:0061821 biolink:NamedThing telomeric D-loop binding Binding to a telomeric D-loop. A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus. tmpzr1t_l9r_go_relaxed.owl telomeric Displacement-loop binding dph molecular_function owl:Class GO:0010236 biolink:NamedThing plastoquinone biosynthetic process The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast. tmpzr1t_l9r_go_relaxed.owl plastoquinone biosynthesis|plastoquinone synthesis|plastoquinone formation|plastoquinone anabolism MetaCyc:PWY-1581 biological_process owl:Class GO:0015221 biolink:NamedThing lipopolysaccharide transmembrane transporter activity Enables the transfer of lipopolysaccharides from one side of a membrane to the other. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl LPS transmembrane transporter activity molecular_function owl:Class GO:0043692 biolink:NamedThing monoterpene metabolic process The chemical reactions and pathways involving monoterpenes, terpenes with a C10 structure. tmpzr1t_l9r_go_relaxed.owl monoterpene metabolism biological_process owl:Class GO:0033822 biolink:NamedThing glucosyl-DNA beta-glucosyltransferase activity Catalysis of the transfer of a beta-D-glucosyl residue from UDP-glucose to a glucosylhydroxymethylcytosine residue in DNA. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:D-glucosyl-DNA beta-D-glucosyltransferase activity|UDPglucose:D-glucosyl-DNA beta-D-glucosyltransferase activity|uridine diphosphoglucose-glucosyldeoxyribonucleate beta-glucosyltransferase activity|T6-beta-glucosyl transferase activity|T6-glucosyl-HMC-beta-glucosyl transferase activity EC:2.4.1.28|MetaCyc:2.4.1.28-RXN molecular_function owl:Class GO:0000101 biolink:NamedThing sulfur amino acid transport The directed movement of amino acids containing sulfur (cystine, methionine and their derivatives) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sulphur amino acid transport biological_process owl:Class GO:0051089 biolink:NamedThing constitutive protein ectodomain proteolysis The proteolytic cleavage of transmembrane proteins and release of their ectodomain that occurs constantly, regardless of environmental conditions or demands. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039553 biolink:NamedThing suppression by virus of host chemokine activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host chemokine activity. tmpzr1t_l9r_go_relaxed.owl inhibition of host chemokines by virus|inhibition by virus of host chemokine activity|downregulation by virus of host chemokine activity|negative regulation by virus of host chemokine activity|down-regulation by virus of host chemokine activity VZ:813 bf 2012-02-28T01:29:55Z biological_process owl:Class GO:0039518 biolink:NamedThing suppression by virus of host cytokine activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host cytokine activity. tmpzr1t_l9r_go_relaxed.owl down-regulation by virus of host cytokine activity|inhibition by virus of host cytokine activity|downregulation by virus of host cytokine activity|negative regulation by virus of host cytokine activity bf 2011-06-22T04:09:41Z biological_process owl:Class GO:0004642 biolink:NamedThing phosphoribosylformylglycinamidine synthase activity Catalysis of the reaction: N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide + L-glutamine + ATP + H(2)O = 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-N-formyl-1-N-(5-phospho-D-ribosyl)glycinamide:L-glutamine amido-ligase (ADP-forming)|FGAR amidotransferase activity|phosphoribosylformylglycinamidine synthetase activity|FGAM synthase activity|formylglycinamide ribotide amidotransferase activity|formylglycinamide ribonucloetide amidotransferase activity|FGAM synthetase activity|FGARAT activity|phosphoribosylformylglycineamidine synthetase activity|5'-phosphoribosylformylglycinamide:L-glutamine amido-ligase (ADP-forming)|N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide:L-glutamine amido-ligase (ADP-forming) KEGG_REACTION:R04463|EC:6.3.5.3|RHEA:17129|Reactome:R-HSA-73812|MetaCyc:FGAMSYN-RXN molecular_function owl:Class GO:1901853 biolink:NamedThing 5,6,7,8-tetrahydrosarcinapterin metabolic process The chemical reactions and pathways involving 5,6,7,8-tetrahydrosarcinapterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydrosarcinapterin metabolism yaf 2013-01-28T11:47:52Z biological_process owl:Class GO:0045776 biolink:NamedThing negative regulation of blood pressure Any process in which the force of blood traveling through the circulatory system is decreased. tmpzr1t_l9r_go_relaxed.owl down regulation of blood pressure|inhibition of blood pressure|down-regulation of blood pressure|downregulation of blood pressure biological_process owl:Class GO:0051912 biolink:NamedThing CoB--CoM heterodisulfide reductase activity Catalysis of the reaction: coenzyme B + coenzyme M + methanophenazine = N-{7-[(2-sulfoethyl)dithio]heptanoyl}-3-O-phospho-L-threonine + dihydromethanophenazine. tmpzr1t_l9r_go_relaxed.owl coenzyme B--coenzyme M heterodisulfide reductase activity|soluble heterodisulfide reductase activity|CoB-CoM heterodisulfide reductase activity|coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity|heterodisulfide reductase activity|coenzyme B:coenzyme M:methanophenazine oxidoreductase activity MetaCyc:1.8.98.1-RXN|EC:1.8.98.1|RHEA:18085 molecular_function owl:Class GO:0070353 biolink:NamedThing GATA1-TAL1-TCF3-Lmo2 complex A protein complex that contains the zinc finger transcription factor GATA1, the LIM domain protein Lmo2 (RBTN2), the basic helix-loop-helix protein TAL1 and its binding partner TCF3. The complex is involved transcriptional regulation in hematopoiesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099619 biolink:NamedThing UDP-4-amino-4-deoxy-L-arabinose formyltransferase activity Catalysis of the reaction: 10-formyltetrahydrofolate + UDP-4-amino-4-deoxy-beta-L-arabinopyranose = 5,6,7,8-tetrahydrofolate + UDP-4-deoxy-4-formamido-beta-L-arabinopyranose. tmpzr1t_l9r_go_relaxed.owl 10-formyltetrahydrofolate:UDP-4-amino-4-deoxy-beta-L-arabinose N-formyltransferase activity|UDP-L-Ara4N formyltransferase activity|ArnAFT activity EC:2.1.2.13|RHEA:24706 molecular_function owl:Class GO:0048149 biolink:NamedThing behavioral response to ethanol Any process that results in a change in the behavior of an organism as a result of an ethanol stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural response to ethanol biological_process owl:Class GO:0045599 biolink:NamedThing negative regulation of fat cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of adipocyte differentiation. tmpzr1t_l9r_go_relaxed.owl inhibition of fat cell differentiation|negative regulation of adipocyte differentiation|negative regulation of adipocyte cell differentiation|down-regulation of fat cell differentiation|down regulation of fat cell differentiation|downregulation of fat cell differentiation biological_process owl:Class GO:0061543 biolink:NamedThing 3-demethylubiquinol-6 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-6 = S-adenosyl-L-homocysteine + ubiquinol-6. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-25T08:05:14Z molecular_function owl:Class GO:0071074 biolink:NamedThing eukaryotic initiation factor eIF2 binding Binding to eukaryotic initiation factor eIF2, a protein complex involved in the initiation of ribosome-mediated translation. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-06T01:39:02Z molecular_function owl:Class GO:0000348 biolink:NamedThing mRNA branch site recognition Recognition of the pre-mRNA branch site sequence by components of the assembling spliceosome. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA branch site recognition|spliceosomal B complex biosynthesis|U12-type nuclear mRNA branch site recognition|spliceosomal B complex formation|U2-type nuclear mRNA branch site recognition|spliceosomal A complex biosynthesis|spliceosomal A complex formation Note that this step represents the formation of the B complex (yeast) or the A complex (mammalian). GO:0000371|GO:0000370 biological_process owl:Class GO:0021791 biolink:NamedThing chemoattraction of branchiomotor neuron axon in branchial arch mesenchyme The process in which a branchiomotor neuron growth cone in the branchial arch mesenchyme is directed to a specific target site in the branchial arch mesenchyme in response to an attractive chemical cue. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis of branchiomotor neuron axon in branchial arch mesenchyme biological_process owl:Class GO:0021789 biolink:NamedThing branchiomotor neuron axon guidance in branchial arch mesenchyme The process in which a branchiomotor neuron growth cone in the branchial arch mesenchyme is directed to a specific target site in the branchial arch mesenchyme. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010716 biolink:NamedThing negative regulation of extracellular matrix disassembly Any process that decreases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl down-regulation of extracellular matrix disassembly|negative regulation of extracellular matrix degradation|down regulation of extracellular matrix disassembly|downregulation of extracellular matrix disassembly|negative regulation of extracellular matrix breakdown|inhibition of extracellular matrix disassembly biological_process owl:Class GO:0052672 biolink:NamedThing CTP:geranylgeraniol kinase activity Catalysis of the reaction: geranylgeraniol + CTP = all-trans-geranyl-geranyl monophosphate + CDP. tmpzr1t_l9r_go_relaxed.owl CTP:geranylgeraniol phosphotransferase activity EC:2.7.1.216|MetaCyc:RXN-11629 ai 2011-04-11T03:26:04Z molecular_function owl:Class GO:0070336 biolink:NamedThing flap-structured DNA binding Binding to a flap structure in DNA. A DNA flap structure is one in which a single-stranded length of DNA or RNA protrudes from a double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097454 biolink:NamedThing Schwann cell microvillus Small finger-like extension of a Schwann cell that contacts the nodal membrane. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1890444066 pr 2012-12-19T13:01:02Z cellular_component owl:Class GO:0031411 biolink:NamedThing gas vesicle An intracellular non-membrane-bounded organelle; a hollow structure made of protein, which usually has the form of a cylindrical tube closed by conical end caps. By regulating their relative gas vesicle content, aquatic microbes are able to perform vertical migrations. tmpzr1t_l9r_go_relaxed.owl gas vacuole Note that although this organelle is commonly referred to as a 'vesicle' or 'vacuole' in the literature, it is not surrounded by a membrane. cellular_component owl:Class GO:0102215 biolink:NamedThing thiocyanate methyltransferase activity Catalysis of the reaction: thiocyanate + S-adenosyl-L-methionine <=> methyl thiocyanate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12189|RHEA:28014 molecular_function owl:Class GO:0033607 biolink:NamedThing SOD1-Bcl-2 complex A heterodimeric protein complex formed of superoxide dismutase 1 and Bcl-2. Complex formation is thought to link superoxide dismutase to an apoptotic pathway. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071419 biolink:NamedThing cellular response to amphetamine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T04:09:02Z biological_process owl:Class GO:0071418 biolink:NamedThing cellular response to amine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-14T04:08:17Z biological_process owl:Class GO:0015951 biolink:NamedThing purine ribonucleotide interconversion The chemical reactions and pathways by which a purine ribonucleotide is synthesized from another purine ribonucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015544 biolink:NamedThing phenyl propionate uniporter activity Enables the transfer of phenyl propionate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl phenyl propionate permease activity molecular_function owl:Class GO:0015292 biolink:NamedThing uniporter activity Catalysis of the transport of a single molecular species across a membrane; transport is independent of the movement of any other molecular species. tmpzr1t_l9r_go_relaxed.owl facilitated diffusion carrier|uniport|single-species transporter activity molecular_function owl:Class GO:0039622 biolink:NamedThing T=16 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=16 symmetry. The T=16 capsid is composed of 12 pentameric and 150 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:807 bf 2012-07-18T02:20:23Z cellular_component owl:Class GO:0102877 biolink:NamedThing alpha-copaene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> alpha-copaene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8416|EC:4.2.3.133|RHEA:33991 molecular_function owl:Class GO:0005528 biolink:NamedThing FK506 binding Binding to a 23-membered macrolide lactone FK506. tmpzr1t_l9r_go_relaxed.owl FK506-sensitive peptidyl-prolyl cis-trans isomerase molecular_function owl:Class GO:1903063 biolink:NamedThing negative regulation of reverse cholesterol transport Any process that stops, prevents or reduces the frequency, rate or extent of reverse cholesterol transport. tmpzr1t_l9r_go_relaxed.owl down-regulation of reverse cholesterol transport|downregulation of reverse cholesterol transport|inhibition of reverse cholesterol transport|down regulation of reverse cholesterol transport rl 2014-05-28T15:15:34Z biological_process owl:Class GO:0103048 biolink:NamedThing tRNA m2A37 methyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + an adenine37 in tRNA <=> S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + a 2-methyladenine37 in tRNA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-7007 molecular_function owl:Class GO:0061715 biolink:NamedThing miRNA 2'-O-methylation The posttranscriptional addition of a methyl group to the 2' oxygen atom of a nucleotide residue in an miRNA molecule. tmpzr1t_l9r_go_relaxed.owl dph 2015-06-29T08:41:03Z biological_process owl:Class GO:0001510 biolink:NamedThing RNA methylation Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043163 biolink:NamedThing cell envelope organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell envelope, everything external to, but not including, the cytoplasmic membrane of bacteria, encompassing the periplasmic space, cell wall, and outer membrane if present. tmpzr1t_l9r_go_relaxed.owl cell envelope organisation|cell envelope organization and biogenesis biological_process owl:Class GO:0097245 biolink:NamedThing flavanol binding Binding to a flavanol. tmpzr1t_l9r_go_relaxed.owl flavan-3-ol binding pr 2012-02-17T03:52:10Z molecular_function owl:Class GO:0102422 biolink:NamedThing curcumin-4'-O-beta-D-gentiotrioside 1,6-glucosyltransferase activity Catalysis of the reaction: curcumin 4'-O-beta-D-gentiotrioside + UDP-alpha-D-glucose <=> curcumin 4'-O-beta-D-gentiotetraside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13814 molecular_function owl:Class GO:0047807 biolink:NamedThing cytokinin 7-beta-glucosyltransferase activity Catalysis of the reaction: 6-alkylaminopurine + UDP-D-glucose = 6-alkylamino-7-beta-D-glucosylpurine + H+ + UDP. This reaction is an N-glucosylation event. tmpzr1t_l9r_go_relaxed.owl cytokinin 7-glucosyltransferase activity|UDP-glucose:zeatin 7-glucosyltransferase activity|cytokinin 7-b-glucosyltransferase activity|UDPglucose:zeatin 7-glucosyltransferase activity|uridine diphosphoglucose-zeatin 7-glucosyltransferase activity|UDP-glucose-zeatin 7-glucosyltransferase activity EC:2.4.1.118|KEGG_REACTION:R04071|RHEA:23272|MetaCyc:CYTOKININ-7-BETA-GLUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0004335 biolink:NamedThing galactokinase activity Catalysis of the reaction: D-galactose + ATP = alpha-D-galactose 1-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:D-galactose-1-phosphotransferase activity|ATP:D-galactose 1-phosphotransferase activity|galactokinase (phosphorylating) EC:2.7.1.6|MetaCyc:GALACTOKIN-RXN|Reactome:R-HSA-5610026|RHEA:13553|KEGG_REACTION:R01092|Reactome:R-HSA-70355 molecular_function owl:Class GO:0033175 biolink:NamedThing chloroplast proton-transporting ATP synthase complex, coupling factor CF(o) All non-F1 subunits of the chloroplast hydrogen-transporting ATP synthase, including integral and peripheral chloroplast thylakoid membrane proteins. tmpzr1t_l9r_go_relaxed.owl chloroplast proton-transporting F-type ATPase complex, coupling factor CF(o)|chloroplast proton-transporting ATP synthase complex, coupling factor CF(0) cellular_component owl:Class GO:0070630 biolink:NamedThing (1->4)-alpha-glucan biosynthetic process The chemical reactions and pathways resulting in the formation of (1->4)-alpha-glucans, compounds composed of glucose residues linked by (1->4)-alpha-D-glucosidic bonds. tmpzr1t_l9r_go_relaxed.owl alpha-1,4 glucan biosynthetic process|1,4-alpha-glucan biosynthetic process|1,4-alpha-glucan formation|alpha-1,4 glucan biosynthesis|1,4-alpha-glucan anabolism|alpha-1,4 glucan formation|alpha-1,4 glucan anabolism|(1->4)-alpha-D-glucan synthesis|1,4-alpha-glucan synthesis|(1->4)-alpha-D-glucan formation|1,4-alpha-glucan biosynthesis|(1->4)-alpha-D-glucan anabolism|(1->4)-alpha-D-glucan biosynthesis|alpha-1,4 glucan synthesis mah 2009-05-01T04:46:34Z biological_process owl:Class GO:0060687 biolink:NamedThing regulation of branching involved in prostate gland morphogenesis Any process that modulates the rate, frequency, or extent of prostate gland branching, the process in which the branching structure of the prostate gland is generated and organized. A branch is a division or offshoot from a main stem. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-05T12:37:14Z biological_process owl:Class GO:0039675 biolink:NamedThing exit of virus from host cell nucleus through nuclear pore The directed movement of the viral genome or a viral particle out of the host cell nucleus through the nuclear pore. tmpzr1t_l9r_go_relaxed.owl exit of virus from host cell nucleus through nuclear pore complex|nuclear pore exit of virus|viral enome export through nuclear pore VZ:1953 bf 2013-09-25T14:10:03Z biological_process owl:Class GO:0006747 biolink:NamedThing FAD biosynthetic process The chemical reactions and pathways resulting in the formation of FAD, the oxidized form of flavin-adenine dinucleotide. tmpzr1t_l9r_go_relaxed.owl FAD biosynthesis|oxidized flavin-adenine dinucleotide biosynthetic process|oxidized flavin adenine dinucleotide biosynthesis|oxidized flavin-adenine dinucleotide biosynthesis|oxidized flavin adenine dinucleotide biosynthetic process|FAD anabolism|FAD synthesis|FAD formation biological_process owl:Class GO:0044518 biolink:NamedThing positive regulation of vasoactive intestinal polypeptide receptor activity in other organism A process that activates or increases the frequency, rate or extent of the activity of a vasoactive intestinal polypeptide receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of VIP receptor activity in other organism jl 2012-02-26T11:50:34Z biological_process owl:Class GO:0044517 biolink:NamedThing modulation of vasoactive intestinal polypeptide receptor activity in other organism The process in which an organism effects a change in the activity of a vasoactive intestinal polypeptide receptor in a second organism. tmpzr1t_l9r_go_relaxed.owl modulation of VIP receptor activity in other organism|regulation of vasoactive intestinal polypeptide receptor activity in other organism jl 2012-02-26T11:48:32Z biological_process owl:Class GO:0019706 biolink:NamedThing protein-cysteine S-palmitoyltransferase activity Catalysis of the transfer of a palmitoyl (systematic name, hexadecanoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl protein-cysteine S-palmitoleyltransferase activity RHEA:36683|Reactome:R-HSA-9647982|Reactome:R-HSA-9021072|EC:2.3.1.225|Reactome:R-HSA-5682084 molecular_function owl:Class GO:1904719 biolink:NamedThing positive regulation of AMPA glutamate receptor clustering Any process that activates or increases the frequency, rate or extent of AMPA glutamate receptor clustering. tmpzr1t_l9r_go_relaxed.owl activation of AMPA glutamate receptor clustering|up-regulation of AMPA glutamate receptor clustering|upregulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|activation of AMPA receptor clustering|up regulation of AMPA glutamate receptor clustering|positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|up-regulation of AMPA receptor clustering|up regulation of AMPA receptor clustering|activation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|positive regulation of AMPA receptor clustering|up regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering|upregulation of AMPA glutamate receptor clustering|upregulation of AMPA receptor clustering|up-regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering hjd 2015-10-07T19:32:34Z biological_process owl:Class GO:0015328 biolink:NamedThing cystine secondary active transmembrane transporter activity Enables the transfer of cystine from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl lysosomal cystine transporter|cystinosin|cystine porter activity molecular_function owl:Class GO:0070219 biolink:NamedThing cellular sulfide ion homeostasis Any process involved in the maintenance of an internal steady state of sulfide ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular sulphide ion homeostasis|cellular sulphide homeostasis|cellular sulfide homeostasis biological_process owl:Class GO:0050397 biolink:NamedThing Watasenia-luciferin 2-monooxygenase activity Catalysis of the reaction: Watasenia luciferin + O2 = oxidized Watasenia luciferin + CO2 + light. tmpzr1t_l9r_go_relaxed.owl Watasenia-luciferin:oxygen 2-oxidoreductase (decarboxylating)|Watasenia-type luciferase activity|luciferase activity MetaCyc:WATASEMIA-LUCIFERIN-2-MONOOXYGENASE-RXN|RHEA:18057|EC:1.13.12.8 molecular_function owl:Class GO:0035573 biolink:NamedThing N-terminal peptidyl-serine trimethylation The trimethylation of the N-terminal serine of proteins to form the derivative N,N,N-trimethylserine. tmpzr1t_l9r_go_relaxed.owl bf 2010-08-06T02:00:42Z biological_process owl:Class GO:2000971 biolink:NamedThing negative regulation of detection of glucose Any process that stops, prevents or reduces the frequency, rate or extent of detection of glucose. tmpzr1t_l9r_go_relaxed.owl negative regulation of glucose detection|negative regulation of glucose perception|negative regulation of glucose sensing vk 2011-08-02T10:18:54Z biological_process owl:Class GO:1990523 biolink:NamedThing bone regeneration The regrowth of bone following its loss or destruction. tmpzr1t_l9r_go_relaxed.owl sl 2014-10-30T15:47:39Z biological_process owl:Class GO:2000549 biolink:NamedThing positive regulation of dendritic cell dendrite assembly Any process that activates or increases the frequency, rate or extent of dendritic cell dendrite assembly. tmpzr1t_l9r_go_relaxed.owl positive regulation of dendritic extension ebc 2011-04-03T07:22:06Z biological_process owl:Class GO:0106138 biolink:NamedThing Sec61 translocon complex binding Binding to a Sec61 translocon complex. tmpzr1t_l9r_go_relaxed.owl hjd 2018-08-15T14:50:29Z molecular_function owl:Class GO:0072743 biolink:NamedThing cellular response to erythromycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an erythromycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-08-31T12:24:52Z biological_process owl:Class GO:0007445 biolink:NamedThing determination of imaginal disc primordium Allocation of embryonic cells to the imaginal disc founder populations, groups of cells that are committed to contribute to the formation of an imaginal disc compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016248 biolink:NamedThing channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a channel. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008718 biolink:NamedThing D-amino-acid dehydrogenase activity Catalysis of the reaction: a D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-amino-acid:(acceptor) oxidoreductase (deaminating)|D-amino-acid:acceptor oxidoreductase (deaminating) RHEA:18125|MetaCyc:DAADEHYDROG-RXN molecular_function owl:Class GO:0002478 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC protein complex. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. tmpzr1t_l9r_go_relaxed.owl exogenous peptide antigen processing and presentation biological_process owl:Class GO:0106336 biolink:NamedThing yolk syncytial layer development The progression of the yolk syncytial layer over time, from its initial formation to the mature structure. The yolk syncytial layer is the peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. tmpzr1t_l9r_go_relaxed.owl YSL development The "yolk syncytial layer" structure can be found in Teleostei, Myxini, Chondrichthyes, Lepisosteiformes and Cephalopoda according. hjd 2020-11-05T17:56:43Z biological_process owl:Class GO:0047247 biolink:NamedThing luteolin-7-O-diglucuronide 4'-O-glucuronosyltransferase activity Catalysis of the reaction: luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] + UDP-alpha-D-glucuronate = H(+) + luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] 4'-O-beta-D-glucosiduronate + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronate:luteolin-7-O-beta-D-diglucuronide 4'-O-glucuronosyltransferase activity|UDPglucuronate:luteolin-7-O-beta-D-diglucuronide 4'-O-glucuronosyltransferase activity|uridine diphosphoglucuronate-luteolin 7-O-diglucuronide glucuronosyltransferase activity|UDPglucuronate:luteolin 7-O-diglucuronide-4'-O-glucuronosyl-transferase activity|UDP-glucuronate:luteolin 7-O-diglucuronide-glucuronosyltransferase activity|LDT KEGG_REACTION:R06828|EC:2.4.1.191|RHEA:22116|MetaCyc:2.4.1.191-RXN molecular_function owl:Class GO:0047745 biolink:NamedThing chlorogenate hydrolase activity Catalysis of the reaction: chlorogenate + H(2)O = (-)-quinate + cis-caffeate + H(+). tmpzr1t_l9r_go_relaxed.owl chlorogenase activity|chlorogenic acid esterase activity MetaCyc:CHLOROGENATE-HYDROLASE-RXN|KEGG_REACTION:R02997|EC:3.1.1.42|RHEA:20689 molecular_function owl:Class GO:0022613 biolink:NamedThing ribonucleoprotein complex biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex. tmpzr1t_l9r_go_relaxed.owl RNA-protein complex biogenesis|ribonucleoprotein complex biogenesis and assembly biological_process owl:Class GO:0140496 biolink:NamedThing gamma-tubulin complex binding Binding to a gamma-tubulin complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19788 pg 2020-07-17T08:14:32Z molecular_function owl:Class GO:0007541 biolink:NamedThing sex determination, primary response to X:A ratio The developmental process in which an organism interprets its X to autosomal chromosomal complement. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030795 biolink:NamedThing methyl jasmonate methylesterase activity Catalysis of the reaction: S-adenosyl-L-methionine + a jasmonate = S-adenosyl-L-homocysteine + a methyljasmonate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:jasmonate O-methyltransferase activity|S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase activity|jasmonic acid carboxyl methyltransferase activity RHEA:13349|EC:2.1.1.141|MetaCyc:RXN-10768 GO:0102078|GO:0045546 molecular_function owl:Class GO:1903511 biolink:NamedThing orotic acid metabolic process The chemical reactions and pathways involving orotic acid. tmpzr1t_l9r_go_relaxed.owl orotic acid metabolism dph 2014-10-01T21:58:06Z biological_process owl:Class GO:0098551 biolink:NamedThing lumenal side of late endosome membrane The side (leaflet) of the late endosome membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal side of late endosome membrane|internal leaflet of late endosome membrane cellular_component owl:Class GO:0046900 biolink:NamedThing tetrahydrofolylpolyglutamate metabolic process The chemical reactions and pathways involving tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues. tmpzr1t_l9r_go_relaxed.owl tetrahydrofolyl-[Glu](n) metabolic process|tetrahydrofolyl-[Glu](n) metabolism|tetrahydrofolylpolyglutamate metabolism biological_process owl:Class GO:0018101 biolink:NamedThing protein citrullination The hydrolysis of peptidyl-arginine to form peptidyl-citrulline. tmpzr1t_l9r_go_relaxed.owl peptidyl-citrulline synthesis from peptidyl-arginine|peptidyl-citrulline biosynthetic process from peptidyl-arginine|peptidyl-citrulline anabolism from peptidyl-arginine|deimination|peptidyl-citrulline formation from peptidyl-arginine RESID:AA0214 Citrullination is distinct from the formation of the free amino acid citrulline (e.g. as part of the urea cycle). biological_process owl:Class GO:0000834 biolink:NamedThing inositol heptakisphosphate 6-kinase activity Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 5,6-bisdiphosphoinositol-1D-myoinositol (1,2,3,4)tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062122 biolink:NamedThing histone methyltransferase activity (H3-K37 specific) Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 37) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 37). This reaction is the addition of a methyl group onto lysine at position 37 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone lysine N-methyltransferase activity (H3-K37 specific) dph 2019-04-01T13:30:11Z molecular_function owl:Class GO:0044104 biolink:NamedThing 2,5-dioxovalerate dehydrogenase (NAD+) activity Catalysis of the reaction: 2,5-dioxopentanoate + NAD+ + H2O = 2-oxoglutarate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 2,5-dioxopentanoate:NAD+ 5-oxidoreductase activity|2,5-dioxopentanoate dehydrogenase (NAD+) activity jl 2009-07-09T04:15:14Z molecular_function owl:Class GO:0060710 biolink:NamedThing chorio-allantoic fusion The cell-cell adhesion process in which the cells of the chorion fuse to the cells of the allantois. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T03:24:27Z biological_process owl:Class GO:1990037 biolink:NamedThing Lewy body core The center portion of a Lewy body. In Parkinson's disease, it contains a matted meshwork of filaments. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao6587439252 pr 2013-02-08T12:56:59Z cellular_component owl:Class GO:0030733 biolink:NamedThing fatty acid O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a fatty acid = S-adenosyl-L-homocysteine + a fatty acid methyl ester. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:fatty-acid O-methyltransferase activity|fatty acid methyltransferase activity|fatty-acid O-methyltransferase activity MetaCyc:FATTY-ACID-O-METHYLTRANSFERASE-RXN|RHEA:23012|EC:2.1.1.15 molecular_function owl:Class GO:0102969 biolink:NamedThing 10-oxogeraniol oxidoreductase activity Catalysis of the reaction: (6E)-8-oxogeraniol + NADP <=> (6E)-8-oxogeranial + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:32615|MetaCyc:RXN-9370 molecular_function owl:Class GO:1904185 biolink:NamedThing equatorial microtubule organizing center assembly The aggregation, arrangement and bonding together of a set of components to form an equatorial microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl EMTOC formation|equatorial microtubule organising centre assembly|equatorial microtubule organizing center formation|equatorial microtubule organising centre formation|EMTOC assembly mah 2015-05-05T14:24:30Z biological_process owl:Class GO:0047801 biolink:NamedThing L-cysteine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-cysteine + 2-oxoglutarate = mercaptopyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-cysteine aminotransferase activity|cysteine transaminase activity|cysteine aminotransferase activity|CGT EC:2.6.1.3|Reactome:R-HSA-9012597|RHEA:17441|MetaCyc:CYSTEINE-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0034546 biolink:NamedThing 2,4-dichloroaniline reductive dehalogenase activity Catalysis of the reaction: 2,4-dichloroaniline + 2 H+ + 2 e- = 4-chloroaniline + HCl. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0819 molecular_function owl:Class GO:0051013 biolink:NamedThing microtubule severing The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends. tmpzr1t_l9r_go_relaxed.owl microtubule severing activity biological_process owl:Class GO:0035486 biolink:NamedThing cytosine/cytosine mispair binding Binding to a double-stranded DNA region containing a C/C mispair. tmpzr1t_l9r_go_relaxed.owl C/C mispair binding bf 2010-04-23T10:56:10Z molecular_function owl:Class GO:0030778 biolink:NamedThing columbamine O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + columbamine = S-adenosyl-L-homocysteine + H(+) + palmatine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:columbamine O-methyltransferase activity MetaCyc:2.1.1.118-RXN|RHEA:15373|KEGG_REACTION:R03721|EC:2.1.1.118 molecular_function owl:Class GO:0050363 biolink:NamedThing tryptophan dehydrogenase activity Catalysis of the reaction: L-tryptophan + NAD(P)+ = (indol-3-yl)pyruvate + NH3 + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl TrpDH activity|L-tryptophan dehydrogenase activity|L-Trp-dehydrogenase activity|TDH|L-tryptophan:NAD(P)+ oxidoreductase (deaminating)|NAD(P)+-L-tryptophan dehydrogenase activity MetaCyc:TRYPTOPHAN-DEHYDROGENASE-RXN|EC:1.4.1.19 molecular_function owl:Class GO:0051754 biolink:NamedThing meiotic sister chromatid cohesion, centromeric The cell cycle process in which centromeres of sister chromatids are joined during meiosis. tmpzr1t_l9r_go_relaxed.owl centromeric meiotic sister chromatin cohesion|meiotic sister chromatid cohesion at centromere|sister chromatid cohesion at centromere at meiosis I biological_process owl:Class GO:0015989 biolink:NamedThing light-driven proton transport The transport of protons against an electrochemical gradient, using energy from light. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902064 biolink:NamedThing regulation of transcription from RNA polymerase II promoter involved in spermatogenesis Any regulation of transcription from RNA polymerase II promoter that is involved in spermatogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of global transcription from Pol II promoter involved in generation of spermatozoa|regulation of transcription from RNA polymerase II promoter, global involved in generation of spermatozoa|regulation of transcription from RNA polymerase II promoter, global involved in spermatogenesis|regulation of transcription from RNA polymerase II promoter involved in generation of spermatozoa|regulation of gene-specific transcription from RNA polymerase II promoter involved in spermatogenesis|regulation of gene-specific transcription from RNA polymerase II promoter involved in generation of spermatozoa|global transcription regulation from Pol II promoter involved in generation of spermatozoa|regulation of transcription from Pol II promoter involved in generation of spermatozoa|regulation of global transcription from Pol II promoter involved in spermatogenesis|regulation of transcription from Pol II promoter involved in spermatogenesis|global transcription regulation from Pol II promoter involved in spermatogenesis kmv 2013-04-16T20:27:18Z biological_process owl:Class GO:0015666 biolink:NamedThing restriction endodeoxyribonuclease activity Catalysis of endonucleolytic cleavage of DNA in a site-specific manner, resulting in double-strand breaks. tmpzr1t_l9r_go_relaxed.owl restriction endonuclease activity|restriction enzyme activity molecular_function owl:Class GO:0080115 biolink:NamedThing myosin XI tail binding Binding to the tail region of a myosin XI heavy chain. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T03:31:45Z molecular_function owl:Class GO:1900725 biolink:NamedThing osmoregulated periplasmic glucan metabolic process The chemical reactions and pathways involving osmoregulated periplasmic glucan. tmpzr1t_l9r_go_relaxed.owl osmoregulated periplasmic glucan metabolism jl 2012-05-24T03:18:32Z biological_process owl:Class GO:1903816 biolink:NamedThing positive regulation of collecting lymphatic vessel constriction Any process that activates or increases the frequency, rate or extent of collecting lymphatic vessel constriction. tmpzr1t_l9r_go_relaxed.owl up regulation of lymphatic vessel myogenic constriction|activation of collecting lymphatic vessel constriction|up-regulation of collecting lymphatic vessel constriction|positive regulation of lymphatic vessel myogenic constriction|upregulation of collecting lymphatic vessel constriction|activation of lymphatic vessel myogenic constriction|upregulation of lymphatic vessel myogenic constriction|up regulation of collecting lymphatic vessel constriction|up-regulation of lymphatic vessel myogenic constriction sl 2015-01-16T17:02:08Z biological_process owl:Class GO:0050534 biolink:NamedThing 3-deoxyoctulosonase activity Catalysis of the reaction: 3-deoxyoctulosonyl-lipopolysaccharide + H2O = 3-deoxyoctulosonic acid + lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl 3-deoxyoctulosonyl-lipopolysaccharide hydrolase activity|alpha-Kdo-ase activity EC:3.2.1.144|MetaCyc:3.2.1.144-RXN molecular_function owl:Class GO:0032130 biolink:NamedThing medial membrane band assembly The assembly of a sterol-rich region of the plasma membrane at the cell surface overlying the contractile ring. tmpzr1t_l9r_go_relaxed.owl medial membrane band formation biological_process owl:Class GO:0042893 biolink:NamedThing polymyxin transport The directed movement of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098826 biolink:NamedThing endoplasmic reticulum tubular network membrane The membrane of the endoplasmic reticulum tubular network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001651 biolink:NamedThing dense fibrillar component A structure found in the nucleolus, which contains newly synthesized preribosomal RNA (pre-rRNA) and a collection of proteins. tmpzr1t_l9r_go_relaxed.owl pars fibrosa NIF_Subcellular:sao1841764412 cellular_component owl:Class GO:0042915 biolink:NamedThing group A colicin transport The directed movement of group A colicins (colicins E1, E2, E3, A, K, and N) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043579 biolink:NamedThing elaioplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an elaioplast, a leucoplast in which oil is stored. tmpzr1t_l9r_go_relaxed.owl elaioplast organization and biogenesis|elaioplast organisation biological_process owl:Class GO:0009659 biolink:NamedThing leucoplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a leucoplast. A leucoplast is a colorless plastid involved in the synthesis of monoterpenes. tmpzr1t_l9r_go_relaxed.owl leucoplast organisation|leucoplast organization and biogenesis biological_process owl:Class GO:0046544 biolink:NamedThing development of secondary male sexual characteristics The process whose specific outcome is the progression of the secondary male sexual characteristics over time, from their formation to the mature structures. In male humans, these include growth of axillary, chest, and pubic hair, voice changes, and testicular/penile enlargement. Development occurs in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007633 biolink:NamedThing pattern orientation The actions or reactions of an individual in response to the orientation of a visual pattern. This is exemplified by some classes of insects which are able to detect and learn the orientation of a set of stripes and subsequently behaviorally discriminate between horizontal, vertical or 45 degree stripes. tmpzr1t_l9r_go_relaxed.owl behavioral response to pattern orientation|behavioural response to pattern orientation biological_process owl:Class GO:0047559 biolink:NamedThing 3-dehydro-L-gulonate 2-dehydrogenase activity Catalysis of the reaction: 3-dehydro-L-gulonate + NAD(P)+ = (4R,5S)-4,5,6-trihydroxy-2,3-dioxohexanoate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 3-keto-L-gulonate dehydrogenase activity|2,3-diketo-L-gulonate reductase activity|3-ketogulonate dehydrogenase activity|3-dehydro-L-gulonate:NAD(P)+ 2-oxidoreductase activity MetaCyc:3-DEHYDRO-L-GULONATE-2-DEHYDROGENASE-RXN|EC:1.1.1.130 molecular_function owl:Class GO:0001154 biolink:NamedThing TFIIIB-class transcription factor complex binding Binding to a general RNA polymerase III transcription factor belonging to the TFIIB complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl TFIIIB-class transcription factor binding krc 2011-01-27T04:53:50Z molecular_function owl:Class GO:1904285 biolink:NamedThing regulation of protein-pyridoxal-5-phosphate linkage Any process that modulates the frequency, rate or extent of protein-pyridoxal-5-phosphate linkage. tmpzr1t_l9r_go_relaxed.owl mcc 2015-06-05T17:21:14Z biological_process owl:Class GO:0019746 biolink:NamedThing hopanoid biosynthetic process The chemical reactions and pathways resulting in the formation of hopanoids, pentacyclic sterol-like compounds based on the hopane nucleus. tmpzr1t_l9r_go_relaxed.owl hopanoid biosynthesis|hopanoid formation|hopanoid synthesis|hopanoid anabolism biological_process owl:Class GO:0004419 biolink:NamedThing hydroxymethylglutaryl-CoA lyase activity Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-3-methylglutaryl coenzyme A lyase activity|3-hydroxy-3-methylglutarate-CoA lyase activity|(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase activity|(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase (acetyl-CoA-forming)|3-hydroxy-3-methylglutaryl-CoA lyase activity|3-hydroxy-3-methylglutaryl CoA cleaving enzyme|hydroxymethylglutaryl coenzyme A-cleaving enzyme|HMG-CoA lyase activity|hydroxymethylglutaryl coenzyme A lyase activity MetaCyc:HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN|EC:4.1.3.4|RHEA:24404|Reactome:R-HSA-6788597|Reactome:R-HSA-74180|KEGG_REACTION:R01360 molecular_function owl:Class GO:0051982 biolink:NamedThing copper-nicotianamine transmembrane transporter activity Enables the transfer of the copper chelate copper-nicotianamine (Cu-NA) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Cu-NA chelate transporter activity molecular_function owl:Class GO:0018341 biolink:NamedThing peptidyl-lysine modification to peptidyl-N6-pyruvic acid 2-iminyl-L-lysine The modification of peptidyl-lysine to form peptidyl-N6-pyruvic acid 2-iminyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl peptidyl-N6-pyruvic acid 2-iminyl-L-lysine anabolism|peptidyl-N6-pyruvic acid 2-iminyl-L-lysine synthesis|peptidyl-N6-pyruvic acid 2-iminyl-L-lysine biosynthesis|peptidyl-N6-pyruvic acid 2-iminyl-L-lysine formation|peptidyl-N6-pyruvic acid 2-iminyl-L-lysine biosynthetic process biological_process owl:Class GO:0061623 biolink:NamedThing glycolytic process from galactose The chemical reactions and pathways resulting in the breakdown of galactose into pyruvate, with the concomitant production of a small amount of ATP. tmpzr1t_l9r_go_relaxed.owl dph 2014-04-28T08:13:38Z biological_process owl:Class GO:1900248 biolink:NamedThing negative regulation of cytoplasmic translational elongation Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translational elongation. tmpzr1t_l9r_go_relaxed.owl inhibition of cytoplasmic translational elongation|downregulation of cytoplasmic translational elongation|down-regulation of cytoplasmic translational elongation|down regulation of cytoplasmic translational elongation vw 2012-04-03T05:07:14Z biological_process owl:Class GO:0007007 biolink:NamedThing inner mitochondrial membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl inner mitochondrial membrane organization and biogenesis|inner mitochondrial membrane organisation|mitochondrial inner membrane organization See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'. biological_process owl:Class GO:0015624 biolink:NamedThing ABC-type ferric-enterobactin transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + ferric-enterobactin(out) = ADP + phosphate + ferric-enterobactin(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent ferric-enterobactin transmembrane transporter activity|ferric-enterobactin ABC transporter|ferric-enterobactin porter activity|ATPase-coupled ferric-enterobactin transmembrane transporter activity|ferric-enterobactin-transporting ATPase activity MetaCyc:ABC-10-RXN|RHEA:58492|EC:7.2.2.17 molecular_function owl:Class GO:0033208 biolink:NamedThing UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetylgalactosamine + N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide = UDP + N-acetylgalactosaminyl-N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide. tmpzr1t_l9r_go_relaxed.owl UDP-GalNAc:Neu5Ac-alpha-2-Gal-beta-1-R beta-1,4-N-acetylgalactosaminyltransferase activity|Sda beta 1,4GalNAc transferase molecular_function owl:Class GO:0033207 biolink:NamedThing beta-1,4-N-acetylgalactosaminyltransferase activity Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming a beta-1,4 linkage. tmpzr1t_l9r_go_relaxed.owl beta-1,4-GalNAc transferase activity molecular_function owl:Class GO:0002117 biolink:NamedThing amphibian larval development The process whose specific outcome is the progression of the amphibian larva over time, from its formation to the mature structure. Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0040035 biolink:NamedThing hermaphrodite genitalia development The process whose specific outcome is the progression of the hermaphrodite genitalia over time, from formation to the mature structures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031274 biolink:NamedThing positive regulation of pseudopodium assembly Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia. tmpzr1t_l9r_go_relaxed.owl stimulation of pseudopodium formation|up-regulation of pseudopodium formation|activation of pseudopodium formation|up regulation of pseudopodium formation|positive regulation of pseudopodium formation|upregulation of pseudopodium formation biological_process owl:Class GO:0010486 biolink:NamedThing manganese:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Mn2+(in) + H+(out) = Mn2+(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl manganese:hydrogen antiporter activity molecular_function owl:Class GO:0060594 biolink:NamedThing mammary gland specification The regionalization process in which the mammary line is specified. The mammary line is a ridge of epidermal cells that will form the mammary placodes. tmpzr1t_l9r_go_relaxed.owl mammary line specification dph 2009-05-13T10:09:10Z biological_process owl:Class GO:0019092 biolink:NamedThing mitochondrial srRNA export from mitochondrion The process in which a srRNA, small subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol. tmpzr1t_l9r_go_relaxed.owl mitochondrial srRNA export from mitochondria|export of mitochondrial srRNA|mitochondrial srRNA transport from mitochondrion|mitochondrial srRNA, mitochondrial export|mitochondrial srRNA export out of mitochondrion|mitochondrial srRNA export biological_process owl:Class GO:0043621 biolink:NamedThing protein self-association Binding to a domain within the same polypeptide. tmpzr1t_l9r_go_relaxed.owl protein self binding|protein self association|intramolecular protein binding molecular_function owl:Class GO:0052034 biolink:NamedThing effector-mediated suppression of host pattern-triggered immunity A process mediated by a molecule secreted by a symbiont that results in the suppression of the innate immune response of the host organism via recognition of a microbe-associated molecular pattern. The innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression of general elicitor induced host innate immunity|suppression of MAMP-induced host innate immunity|negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immune response|negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immunity|inhibition by symbiont of pathogen-associated molecular pattern-induced host innate immunity|negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction|downregulation by symbiont of pathogen-associated molecular pattern-induced host innate immunity|suppression by symbiont of microbe-associated molecular pattern-induced host innate immune response|suppression of PAMP induced host innate immunity|down regulation by symbiont of pathogen-associated molecular pattern-induced host innate immunity|down-regulation by symbiont of pathogen-associated molecular pattern-induced host innate immunity|suppression of MAMP induced host innate immunity|suppression of general elicitor-induced host innate immunity|suppression of PAMP-induced host innate immunity|suppression of pathogen-associated molecular pattern-induced host innate immunity https://github.com/geneontology/go-ontology/issues/21161 GO:0052258 biological_process owl:Class GO:0009061 biolink:NamedThing anaerobic respiration The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which uses compounds other than oxygen (e.g. nitrate, sulfate) as the terminal electron acceptor. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cellular_respiration#Anaerobic_respiration|MetaCyc:ANARESP1-PWY|Wikipedia:Anaerobic_respiration biological_process owl:Class GO:0020020 biolink:NamedThing food vacuole Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa. tmpzr1t_l9r_go_relaxed.owl digestive vacuole GO:0005772 cellular_component owl:Class GO:0051788 biolink:NamedThing response to misfolded protein Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047579 biolink:NamedThing 4-hydroxymandelate oxidase activity Catalysis of the reaction: (S)-4-hydroxymandelate + H(+) + O(2) = 4-hydroxybenzaldehyde + CO(2) + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl L-4-hydroxymandelate oxidase (decarboxylating)|(S)-2-hydroxy-2-(4-hydroxyphenyl)acetate:oxygen 1-oxidoreductase activity MetaCyc:4-HYDROXYMANDELATE-OXIDASE-RXN|RHEA:15833|KEGG_REACTION:R02673|EC:1.1.3.19 molecular_function owl:Class GO:0015974 biolink:NamedThing guanosine pentaphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates. tmpzr1t_l9r_go_relaxed.owl guanosine pentaphosphate breakdown|guanosine pentaphosphate (5'-pppGpp-3') catabolism|guanosine pentaphosphate catabolism|guanosine pentaphosphate (5'-pppGpp-3') catabolic process|guanosine pentaphosphate degradation biological_process owl:Class GO:0017025 biolink:NamedThing TBP-class protein binding Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). tmpzr1t_l9r_go_relaxed.owl TATA-binding protein binding|TBP-related factor (TRF) protein binding|TBP binding molecular_function owl:Class GO:0061015 biolink:NamedThing snRNA import into nucleus The directed movement of snRNA, small nuclear ribonucleic acid into the nucleus. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-29T02:36:00Z biological_process owl:Class GO:0060333 biolink:NamedThing interferon-gamma-mediated signaling pathway A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far. tmpzr1t_l9r_go_relaxed.owl type II interferon-mediated signaling pathway|immune interferon signaling pathway|gamma-interferon-mediated signaling pathway|type II IFN-mediated signaling pathway|interferon-gamma-mediated signalling pathway biological_process owl:Class GO:0098029 biolink:NamedThing icosahedral viral capsid, spike A short structure attached to an icosahedral virion capsid, and used for attachment to the host cell. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-19T14:37:11Z cellular_component owl:Class GO:0006670 biolink:NamedThing sphingosine metabolic process The chemical reactions and pathways involving sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues. tmpzr1t_l9r_go_relaxed.owl (4E)-sphing-4-enine metabolism|sphingosine metabolism|sphing-4-enine metabolism|(4E)-sphing-4-enine metabolic process|sphing-4-enine metabolic process biological_process owl:Class GO:0071920 biolink:NamedThing cleavage body A nuclear body that contains proteins involved in pre-mRNA 3'-end cleavage and polyadenylation, such as DDX1, CSTF2 and CPSFs, as well as the transcription factors TFIIE and TFIIF. Cleavage bodies are localized adjacent to Cajal bodies and are involved in mRNA3'-end processing. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-28T10:35:05Z cellular_component owl:Class GO:0015505 biolink:NamedThing uracil:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: uracil(out) + cation(out) = uracil(in) + cation(in). tmpzr1t_l9r_go_relaxed.owl uracil permease activity molecular_function owl:Class GO:0042008 biolink:NamedThing interleukin-18 receptor activity Combining with interleukin-18 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-18R|IL-18 receptor activity molecular_function owl:Class GO:0010473 biolink:NamedThing GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity Catalysis of the reaction: GDP-L-galactose + myo-inositol 1-phosphate = alpha-L-galactose-1-phosphate + GDP-myoinositol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033058 biolink:NamedThing directional locomotion Self-propelled movement of a cell or organism from one location to another along an axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098820 biolink:NamedThing trans-synaptic protein complex A protein complex that spans the synaptic cleft and has parts in both the pre- and post-synaptic membranes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050815 biolink:NamedThing phosphoserine residue binding Binding to a phosphorylated serine residue within a protein. tmpzr1t_l9r_go_relaxed.owl phosphoserine binding molecular_function owl:Class GO:1904384 biolink:NamedThing cellular response to sodium phosphate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium phosphate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T16:55:13Z biological_process owl:Class GO:0018569 biolink:NamedThing hydroquinone 1,2-dioxygenase activity Catalysis of the reaction: hydroquinone + O2 = cis,trans-4-hydroxymuconic semialdehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0228|EC:1.13.11.- molecular_function owl:Class GO:0005151 biolink:NamedThing interleukin-1, type II receptor binding Binding to a Type II interleukin-1 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-1, type II receptor ligand|IL-1 type II molecular_function owl:Class GO:0052925 biolink:NamedThing dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity Catalysis of the reaction: an alpha-D-man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl D-mannosyl phosphate = H(+) + alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl phosphate. tmpzr1t_l9r_go_relaxed.owl dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase activity|man(5)GlcNAc(2)-PP-Dol mannosyltransferase activity MetaCyc:RXN-5466|RHEA:29527|EC:2.4.1.258|KEGG_REACTION:R06258 molecular_function owl:Class GO:0001732 biolink:NamedThing formation of cytoplasmic translation initiation complex Joining of the large subunit, with release of IF2/eIF2 and IF3/eIF3. This leaves the functional ribosome at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site. tmpzr1t_l9r_go_relaxed.owl translation initiation complex assembly|cytoplasmic translation initiation complex assembly|formation of translation initiation complex biological_process owl:Class GO:0017176 biolink:NamedThing phosphatidylinositol N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine alpha-1,6-acetyl-D-glucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:1-phosphatidyl-1D-myo-inositol 6-(N-acetyl-alpha-D-glucosaminyl)transferase activity|uridine diphosphoacetylglucosamine alpha1,6-acetyl-D-glucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:phosphatidylinositol N-acetyl-D-glucosaminyltransferase activity RHEA:14789|EC:2.4.1.198|MetaCyc:2.4.1.198-RXN molecular_function owl:Class GO:0097375 biolink:NamedThing spinal sensory neuron axon guidance The process in which the migration of an axon growth cone of a spinal sensory neuron is directed to a specific target site in response to a combination of attractive and repulsive cues. A spinal sensory neuron is a sensory neuron that project to the spinal cord. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-01T10:17:20Z biological_process owl:Class GO:1905903 biolink:NamedThing negative regulation of mesoderm formation Any process that stops, prevents or reduces the frequency, rate or extent of mesoderm formation. tmpzr1t_l9r_go_relaxed.owl inhibition of mesoderm formation|downregulation of mesoderm formation|down-regulation of mesoderm formation|down regulation of mesoderm formation rph 2017-02-03T12:28:29Z biological_process owl:Class GO:1990028 biolink:NamedThing intermediate voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by an intermediate voltage-gated channel. An intermediate voltage-gated channel is a channel whose open state is dependent on intermediate voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl R-type calcium channel pr 2013-02-06T20:55:41Z molecular_function owl:Class GO:0102165 biolink:NamedThing (Z)-3-hexen-1-ol acetyltransferase activity Catalysis of the reaction: acetyl-CoA + (Z)-hex-3-en-1-ol <=> (3Z)-hex-3-en-1-yl acetate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11852|RHEA:28254|EC:2.3.1.195 molecular_function owl:Class GO:0030790 biolink:NamedThing chlorophenol O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + trichlorophenol = S-adenosyl-L-homocysteine + trichloroanisole. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:trichlorophenol O-methyltransferase activity|trichlorophenol O-methyltransferase activity|halogenated phenol O-methyltransferase activity MetaCyc:2.1.1.136-RXN|RHEA:18909|EC:2.1.1.136 molecular_function owl:Class GO:0051876 biolink:NamedThing pigment granule dispersal The directed movement of pigment granules within a cell towards the cell periphery. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048061 biolink:NamedThing positive gravitaxis The directed movement of a motile cell or organism towards the source of gravity. tmpzr1t_l9r_go_relaxed.owl positive taxis in response to gravity|positive geotactic behavior|positive geotactic behaviour|positive taxis in response to gravitytaxis in response to gravitational stimulus|positive gravitactic behavior|positive gravitactic behaviour GO:0048064 biological_process owl:Class GO:0048375 biolink:NamedThing negative regulation of lateral mesodermal cell fate determination Any process that stops, prevents, or reduces the frequency, rate or extent of lateral mesoderm cell fate determination. tmpzr1t_l9r_go_relaxed.owl inhibition of lateral mesodermal cell fate determination|down regulation of lateral mesodermal cell fate determination|down-regulation of lateral mesodermal cell fate determination|downregulation of lateral mesodermal cell fate determination|negative regulation of lateral plate mesodermal cell fate determination biological_process owl:Class GO:0031053 biolink:NamedThing primary miRNA processing Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule. tmpzr1t_l9r_go_relaxed.owl primary microRNA processing|pri-miRNA processing biological_process owl:Class GO:0023028 biolink:NamedThing MHC class I protein binding, via lateral surface Binding to a major histocompatibility complex class I molecules via the lateral surface. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0071562 biolink:NamedThing nucleus-vacuole junction assembly The aggregation, arrangement and bonding together of a set of components to form a nucleus-vacuole junction, which are membrane contact sites formed between the vacuole membrane and the outer nuclear membrane. In S. cerevisiae these contacts are mediated through direct physical interaction between Vac8p and Nvj1p. tmpzr1t_l9r_go_relaxed.owl NVJ formation|nucleus-vacuole junction formation|NV junction formation|NV junction assembly|NVJ assembly mah 2010-01-20T02:16:36Z biological_process owl:Class GO:0033717 biolink:NamedThing gluconate 2-dehydrogenase (acceptor) activity Catalysis of the reaction: D-gluconate + acceptor = 2-dehydro-D-gluconate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-gluconate dehydrogenase activity|gluconate oxidase activity|2-ketogluconate reductase activity|gluconic acid dehydrogenase activity|gluconic dehydrogenase activity|D-gluconate dehydrogenase, 2-keto-D-gluconate-yielding activity|D-gluconate:(acceptor) 2-oxidoreductase activity|D-gluconate:acceptor 2-oxidoreductase activity EC:1.1.99.3|RHEA:12769|MetaCyc:GLUCONATE-2-DEHYDROGENASE-RXN molecular_function owl:Class GO:0016403 biolink:NamedThing dimethylargininase activity Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline. tmpzr1t_l9r_go_relaxed.owl N(G),N(G)-dimethylarginine dimethylaminohydrolase activity|NG,NG-dimethyl-L-arginine dimethylamidohydrolase activity|dimethylarginine dimethylaminohydrolase activity|NG,NG-dimethylarginine dimethylaminohydrolase activity EC:3.5.3.18|Reactome:R-HSA-5693373|RHEA:17305|MetaCyc:DIMETHYLARGININASE-RXN molecular_function owl:Class GO:0019669 biolink:NamedThing anaerobic glycine catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of glycine, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glycine fermentation biological_process owl:Class GO:0050069 biolink:NamedThing lysine dehydrogenase activity Catalysis of the reaction: L-lysine + NAD+ = 1,2-didehydropiperidine-2-carboxylate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl L-lysine:NAD+ oxidoreductase (deaminating, cyclizing) RHEA:18505|MetaCyc:LYSINE-DEHYDROGENASE-RXN|EC:1.4.1.15 molecular_function owl:Class GO:0102554 biolink:NamedThing lipoyl synthase activity (acting on 2-oxoglutarate-dehydrogenase E2 protein Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [2-oxoglutarate-dehydrogenase E2 protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + 2 H+ + a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14959 molecular_function owl:Class GO:0016514 biolink:NamedThing SWI/SNF complex A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof. tmpzr1t_l9r_go_relaxed.owl SWI-SNF complex cellular_component owl:Class GO:0042806 biolink:NamedThing fucose binding Binding to fucose, the pentose 6-deoxygalactose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102205 biolink:NamedThing cholesterol alpha-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + cholesterol = UDP + cholesteryl beta-D-glucoside + H+. tmpzr1t_l9r_go_relaxed.owl cholesterol UDP-glucosyltransferase activity|cholesterol allpha-glucosyltransferase activity MetaCyc:RXN-12127|EC:2.4.1.173|RHEA:61848 GO:0051505 molecular_function owl:Class GO:0010881 biolink:NamedThing regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion Any process that modulates the frequency, rate or extent of cardiac muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050473 biolink:NamedThing arachidonate 15-lipoxygenase activity Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,11Z,13E)-(15S)-15-hydroperoxyicosa-5,8,11,13-tetraenoate. tmpzr1t_l9r_go_relaxed.owl 15-lipoxygenase activity|arachidonate omega6 lipoxygenase activity|linoleic acid omega6-lipoxygenase activity|arachidonate:oxygen 15-oxidoreductase activity|omega6 lipoxygenase activity|arachidonate omega(6) lipoxygenase activity Reactome:R-HSA-2162002|Reactome:R-HSA-9020275|Reactome:R-HSA-9028255|RHEA:16869|Reactome:R-HSA-9020262|Reactome:R-HSA-9018907|EC:1.13.11.33|Reactome:R-HSA-9026003|Reactome:R-HSA-9024872|Reactome:R-HSA-2161951|Reactome:R-HSA-9025152|Reactome:R-HSA-9027532|MetaCyc:ARACHIDONATE-15-LIPOXYGENASE-RXN|Reactome:R-HSA-9024881|Reactome:R-HSA-9020261|Reactome:R-HSA-9027607|Reactome:R-HSA-9027627|Reactome:R-HSA-9020610 molecular_function owl:Class GO:0071186 biolink:NamedThing protocadherin-alpha-v4-protocadherin-gamma-b2 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdhga1-Pcdhgb2 complex mah 2009-11-23T04:21:33Z cellular_component owl:Class GO:0009423 biolink:NamedThing chorismate biosynthetic process The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. tmpzr1t_l9r_go_relaxed.owl chorismate formation|shikimate synthesis|shikimate pathway|shikimate anabolism|shikimate biosynthetic process|shikimate biosynthesis|chorismate synthesis|chorismate anabolism|chorismate biosynthesis MetaCyc:ARO-PWY GO:0033587 biological_process owl:Class GO:0034958 biolink:NamedThing aminohydroquinone monooxygenase activity Catalysis of the reaction: aminohydroquinone + 2 e- + 2 H+ + 1/2 O2 = 1,2,4-benzenetriol + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.99.-|UM-BBD_reactionID:r1497 molecular_function owl:Class GO:0008667 biolink:NamedThing 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity Catalysis of the reaction: (2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate + NAD(+) = 2,3-dihydroxybenzoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydro-2,3-dihydroxybenzoate:NAD+ oxidoreductase activity|2,3-DHB dehydrogenase activity KEGG_REACTION:R01505|EC:1.3.1.28|MetaCyc:DHBDEHYD-RXN|RHEA:23824 molecular_function owl:Class GO:0044516 biolink:NamedThing positive regulation of glucagon-like peptide receptor 1 activity in other organism A process that activates or increases the frequency, rate or extent of the activity of a glucagon-like peptide receptor 1 in a second organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-26T11:09:44Z biological_process owl:Class GO:0098736 biolink:NamedThing negative regulation of the force of heart contraction Any process that decreases the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033154 biolink:NamedThing ABC-type oligogalacturonide transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + oligogalacturonide(out) = ADP + phosphate + oligogalacturonide(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled oligogalacturonide transmembrane transporter activity|oligogalacturonide transmembrane transporter activity|ATP-dependent oligogalacturonide transmembrane transporter activity|oligogalacturonide-transporting ATPase activity|oligogalacturonide transporting ATPase activity TC:3.A.1.1.11 GO:0033155 molecular_function owl:Class GO:0008442 biolink:NamedThing 3-hydroxyisobutyrate dehydrogenase activity Catalysis of the reaction: 3-hydroxy-2-methylpropanoate + NAD+ = 2-methyl-3-oxopropanoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-70885|RHEA:17681|MetaCyc:3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|Reactome:R-HSA-508473|EC:1.1.1.31 molecular_function owl:Class GO:0097129 biolink:NamedThing cyclin D2-CDK4 complex A protein complex consisting of cyclin D2 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:53:15Z cellular_component owl:Class GO:0000249 biolink:NamedThing C-22 sterol desaturase activity Catalysis of the formation of the C-22(23) double bond in the sterol side chain. An example reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047107 biolink:NamedThing gamma-guanidinobutyraldehyde dehydrogenase activity Catalysis of the reaction: 4-guanidinobutanal + H(2)O + NAD(+) = 4-guanidinobutanoate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 4-guanidinobutanal:NAD+ 1-oxidoreductase activity|alpha-guanidinobutyraldehyde dehydrogenase activity|4-guanidinobutyraldehyde dehydrogenase activity|GBAL dehydrogenase activity KEGG_REACTION:R03177|RHEA:14381|EC:1.2.1.54|MetaCyc:1.2.1.54-RXN molecular_function owl:Class GO:0102588 biolink:NamedThing cyanidin 3-O-glucoside 6''-O-malonyltransferase activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + malonyl-CoA <=> cyanidin 3-O-(6-O-malonyl-beta-D-glucoside) + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15335|EC:2.3.1.171 molecular_function owl:Class GO:0030382 biolink:NamedThing sperm mitochondrion organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of sperm mitochondria; the process in which they take on their characteristic morphology; they are flattened, elongated, and arranged circumferentially into a tight helical coil around the tail-dense fibers of the mature sperm. tmpzr1t_l9r_go_relaxed.owl sperm mitochondria organisation|sperm mitochondria organization and biogenesis|sperm mitochondrion organization and biogenesis biological_process owl:Class GO:0022620 biolink:NamedThing vegetative cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a vegetative cell. The vegetative cell is gives rise to the pollen tube. tmpzr1t_l9r_go_relaxed.owl tube cell differentiation biological_process owl:Class GO:0001602 biolink:NamedThing pancreatic polypeptide receptor activity Combining with pancreatic polypeptide PP to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004983 biolink:NamedThing neuropeptide Y receptor activity Combining with neuropeptide Y to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072050 biolink:NamedThing S-shaped body morphogenesis The process in which the S-shaped body is generated and organized. The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T03:45:19Z biological_process owl:Class GO:0071178 biolink:NamedThing MAML2-RBP-Jkappa-ICN4 complex A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML2-RBP-Jkappa-Notch4 complex mah 2009-11-23T02:49:21Z cellular_component owl:Class GO:1903048 biolink:NamedThing regulation of acetylcholine-gated cation channel activity Any process that modulates the frequency, rate or extent of acetylcholine-gated cation channel activity. tmpzr1t_l9r_go_relaxed.owl bf 2014-05-22T14:46:53Z biological_process owl:Class GO:0019496 biolink:NamedThing serine-isocitrate lyase pathway A one-carbon metabolic process in which acetyl-CoA is produced from formaldehyde and carbon dioxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006730 biolink:NamedThing one-carbon metabolic process The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. tmpzr1t_l9r_go_relaxed.owl one-carbon metabolism|one-carbon transfer metabolism|one-carbon transfer metabolic process|one carbon metabolism|one carbon metabolic process UM-BBD_pathwayID:C1cyc GO:0019754|GO:0019753 biological_process owl:Class GO:0070251 biolink:NamedThing pristanate-CoA ligase activity Catalysis of the reaction: ATP + pristanate + CoA = AMP + diphosphate + pristanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl pristanoyl-CoA ligase activity|pristanate:CoA ligase (AMP-forming) Reactome:R-HSA-389632|RHEA:47264 molecular_function owl:Class GO:0102377 biolink:NamedThing steviol 13-O glucosyltransferase activity Catalysis of the reaction: steviol + UDP-alpha-D-glucose = steviolmonoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13511 molecular_function owl:Class GO:1902223 biolink:NamedThing erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of erythrose 4-phosphate/phosphoenolpyruvate family amino acid. tmpzr1t_l9r_go_relaxed.owl erythrose 4-phosphate/phosphoenolpyruvate family amino acid synthesis|erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthesis|erythrose 4-phosphate/phosphoenolpyruvate family amino acid formation|erythrose 4-phosphate/phosphoenolpyruvate family amino acid anabolism pr 2013-06-13T10:37:49Z biological_process owl:Class GO:0097327 biolink:NamedThing response to antineoplastic agent Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antineoplastic agent stimulus. An antineoplastic agent is a substance that inhibits or prevents the proliferation of neoplasms. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T10:48:28Z biological_process owl:Class GO:0042000 biolink:NamedThing translocation of peptides or proteins into host The directed movement of peptides or proteins produced by an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl transport of peptides or proteins into host|translocation of peptides or proteins into other organism involved in symbiotic interaction|transport of peptides or proteins into other organism during symbiotic interaction|translocation of peptides or proteins into other organism during symbiotic interaction GO:0051808 biological_process owl:Class GO:0120197 biolink:NamedThing mucociliary clearance The respiratory system process driven by motile cilia on epithelial cells of the respiratory tract by which mucus and associated inhaled particles and pathogens trapped within it are moved out of the airways. tmpzr1t_l9r_go_relaxed.owl MCC|MCT|mucociliary transport krc 2019-04-26T16:16:50Z biological_process owl:Class GO:0047959 biolink:NamedThing glycine dehydrogenase (cytochrome) activity Catalysis of the reaction: glycine + H2O + 2 ferricytochrome c = glyoxylate + NH3 + 2 ferrocytochrome c. tmpzr1t_l9r_go_relaxed.owl glycine:ferricytochrome-c oxidoreductase (deaminating)|reductase, glycine-cytochrome c|glycine-cytochrome c reductase activity RHEA:16909|MetaCyc:GLYCINE-DEHYDROGENASE-CYTOCHROME-RXN|EC:1.4.2.1 molecular_function owl:Class GO:0016640 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, cytochrome as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a cytochrome molecule. tmpzr1t_l9r_go_relaxed.owl EC:1.4.2.- molecular_function owl:Class GO:0102463 biolink:NamedThing quercetin 3-gentiobioside 7-O-rhamnosyltransferase activity Catalysis of the reaction: quercetin-3-gentiobioside + UDP-L-rhamnose <=> quercetin 3-O-gentiobioside-7-O-rhamnoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14012 molecular_function owl:Class GO:0003304 biolink:NamedThing myocardial epithelial involution involved in heart jogging The morphogenetic process in which the myocardium bends along a linear axis and contributes to the process of heart jogging. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T11:03:33Z biological_process owl:Class GO:0000476 biolink:NamedThing maturation of 4.5S rRNA Any process involved in the maturation of a precursor 4.5S ribosomal RNA (rRNA) molecule into a mature 4.5S rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902084 biolink:NamedThing fumagillin metabolic process The chemical reactions and pathways involving fumagillin. tmpzr1t_l9r_go_relaxed.owl fumagillin metabolism di 2013-04-25T14:00:41Z biological_process owl:Class GO:0070626 biolink:NamedThing (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity Catalysis of the reaction: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide. tmpzr1t_l9r_go_relaxed.owl succino AMP-lyase activity|SAICAR-lyase (fumarate forming) activity|(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|adenylosuccinase activity|adenylosuccinate lyase activity KEGG_REACTION:R04559|EC:4.3.2.2|MetaCyc:AICARSYN-RXN|RHEA:23920 mah 2009-05-01T04:13:49Z molecular_function owl:Class GO:0102538 biolink:NamedThing UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-quinovosamine + NAD(P) = UDP-2-acetamido-4-dehydro-2,6-dideoxy-beta-D-glucose + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14767 molecular_function owl:Class GO:0046988 biolink:NamedThing asioloorosomucoid beta-1,3-glucuronosyltransferase activity Catalysis of the transfer, in a beta 1,3 linkage, of D-glucuronic acid (GlcUA) from UDP-GlcUA to asioloorosomucoid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008894 biolink:NamedThing guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity Catalysis of the reaction: guanosine 5'-triphosphate,3'-diphosphate + H2O = guanosine 5'-diphosphate,3'-diphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl guanosine-5'-triphosphate,3'-diphosphate 5'-phosphohydrolase activity|pppGpp 5'-phosphohydrolase activity|guanosine 5'-triphosphate-3'-diphosphate 5'-phosphohydrolase activity|guanosine 5'-triphosphate 3'-diphosphate 5'-phosphatase activity|guanosine pentaphosphatase activity|guanosine pentaphosphate phosphatase activity|guanosine pentaphosphate phosphohydrolase activity|guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase activity MetaCyc:PPPGPPHYDRO-RXN|RHEA:13073|EC:3.6.1.40 molecular_function owl:Class GO:0007536 biolink:NamedThing activation of recombination (HML) The activation of recombination at a mating type locus, such that it is used in preference to the other donor locus for mating type switching; exemplified by the HML locus and surrounding sequences on Chromosome III in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008179 biolink:NamedThing adenylate cyclase binding Binding to an adenylate cyclase. tmpzr1t_l9r_go_relaxed.owl adenylyl cyclase binding Reactome:R-HSA-170672 molecular_function owl:Class GO:0097383 biolink:NamedThing dIDP diphosphatase activity Catalysis of the reaction: dIDP + H2O = dIMP + phosphate. tmpzr1t_l9r_go_relaxed.owl deoxyinosine-diphosphatase activity RHEA:35211|Reactome:R-HSA-2509793 pr 2012-10-11T16:04:40Z molecular_function owl:Class GO:0097382 biolink:NamedThing deoxynucleoside-diphosphatase activity Catalysis of the reaction: a deoxynucleoside diphosphate + H2O = a deoxynucleotide + phosphate. tmpzr1t_l9r_go_relaxed.owl pr 2012-10-11T16:03:22Z molecular_function owl:Class GO:0071068 biolink:NamedThing alpha9-beta1 integrin-ADAM12 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM12. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM12 complex mah 2009-11-03T04:05:15Z cellular_component owl:Class GO:0050149 biolink:NamedThing o-aminophenol oxidase activity Catalysis of the reaction: 2 2-aminophenol + 3 O2 = 2 isophenoxazine + 6 H2O. tmpzr1t_l9r_go_relaxed.owl o-aminophenol:O2 oxidoreductase activity|isophenoxazine synthase activity|2-aminophenol:O2 oxidoreductase activity|GriF|2-aminophenol:oxygen oxidoreductase activity MetaCyc:O-AMINOPHENOL-OXIDASE-RXN|EC:1.10.3.4|RHEA:40963 molecular_function owl:Class GO:0047136 biolink:NamedThing 4-(dimethylamino)phenylazoxybenzene reductase activity Catalysis of the reaction: 4-(dimethylamino)azobenzene + H(2)O + NADP(+) = 4-(dimethylamino)phenylazoxybenzene + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl NADPH-dependent DMAB N-oxide reductase activity|NADPH2:4-(dimethylamino)phenylazoxybenzene oxidoreductase activity|4-(dimethylamino)phenylazobenzene:NADP+ oxidoreductase activity|dimethylaminoazobenzene N-oxide reductase activity|NADPH:4-(dimethylamino)phenylazoxybenzene oxidoreductase activity|N,N-dimethyl-p-aminoazobenzene oxide reductase activity MetaCyc:1.6.6.12-RXN|EC:1.7.1.11|KEGG_REACTION:R04303|RHEA:19789 molecular_function owl:Class GO:0060489 biolink:NamedThing planar dichotomous subdivision of terminal units involved in lung branching morphogenesis The process in which a lung bud bifurcates parallel to the plane of the previous bud. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047683 biolink:NamedThing aryl-aldehyde dehydrogenase (NADP+) activity Catalysis of the reaction: an aromatic aldehyde + NADP+ + AMP + diphosphate + H2O = an aromatic acid + NADPH + ATP. tmpzr1t_l9r_go_relaxed.owl aryl-aldehyde:NADP+ oxidoreductase (ATP-forming)|aromatic acid reductase activity MetaCyc:ARYL-ALDEHYDE-DEHYDROGENASE-NADP+-RXN|EC:1.2.1.30|RHEA:19229 molecular_function owl:Class GO:0009429 biolink:NamedThing bacterial-type flagellum basal body, proximal rod The portion of the central rod of the bacterial-type flagellar basal body that is proximal to the cell membrane; the proximal rod connects the distal rod to the flagellar motor. tmpzr1t_l9r_go_relaxed.owl flagellar basal body, proximal rod|flagellin-based flagellum basal body, proximal rod cellular_component owl:Class GO:0070978 biolink:NamedThing voltage-gated calcium channel complex assembly Cellular protein complex assembly that results in the formation of a voltage-gated calcium channel complex. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-06T04:51:13Z biological_process owl:Class GO:0016520 biolink:NamedThing growth hormone-releasing hormone receptor activity Combining with growth hormone-releasing hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019935 biolink:NamedThing cyclic-nucleotide-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via a cyclic nucleotide. Includes production or release of the cyclic nucleotide, and downstream effectors that further transmit the signal within the cell. tmpzr1t_l9r_go_relaxed.owl cyclic-nucleotide-mediated signalling biological_process owl:Class GO:0008566 biolink:NamedThing mitochondrial protein-transporting ATPase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate; drives the transport of proteins into the mitochondrion via the mitochondrial inner membrane translocase complex. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled mitochondrial protein transporter activity MetaCyc:3.6.3.51-RXN|EC:7.4.2.3 See also the cellular component term 'mitochondrial inner membrane presequence translocase complex ; GO:0005744'. molecular_function owl:Class GO:0102264 biolink:NamedThing tRNA-dihydrouridine20 synthase activity Catalysis of the reaction: a 5,6-dihydrouracil20 in tRNA + NAD(P) <=> H+ + a uracil20 in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.91|MetaCyc:RXN-12456 molecular_function owl:Class GO:0102118 biolink:NamedThing gibberellin A4 carboxyl methyltransferase activity Catalysis of the reaction: gibberellin A4 + S-adenosyl-L-methionine <=> gibberellin A4 methyl ester + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:36107|MetaCyc:RXN-11359|EC:2.1.1.276 molecular_function owl:Class GO:1905079 biolink:NamedThing regulation of cerebellar neuron development Any process that modulates the frequency, rate or extent of cerebellar neuron development. tmpzr1t_l9r_go_relaxed.owl hjd 2016-03-24T19:45:17Z biological_process owl:Class GO:0098579 biolink:NamedThing active sex chromosome A sex chromosome that has not been inactivated. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033991 biolink:NamedThing aldos-2-ulose dehydratase activity Catalysis of the reactions: 1,5-anhydro-D-fructose = 2-hydroxy-2-(hydroxymethyl)-2H-pyran-3(6H)-one + H2O; (1a) 1,5-anhydro-D-fructose = 1,5-anhydro-4-deoxy-D-glycero-hex-3-en-2-ulose + H2O and (1b) 1,5-anhydro-4-deoxy-D-glycero-hex-3-en-2-ulose = 2-hydroxy-2-(hydroxymethyl)-2H-pyran-3(6H)-one. tmpzr1t_l9r_go_relaxed.owl 1,5-anhydro-D-fructose hydro-lyase (microthecin-forming) activity|1,5-anhydro-D-fructose dehydratase (microthecin-forming) activity|AUDH|pyranosone dehydratase activity RHEA:12100|MetaCyc:4.2.1.110-RXN|EC:4.2.1.110 molecular_function owl:Class GO:0019871 biolink:NamedThing sodium channel inhibitor activity Binds to and stops, prevents, or reduces the activity of a sodium channel. tmpzr1t_l9r_go_relaxed.owl GO:0019868 molecular_function owl:Class GO:0052766 biolink:NamedThing mannoside alpha-1,4-mannosidase activity Catalysis of the hydrolysis of the alpha-(1->4) linkage of the terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides. tmpzr1t_l9r_go_relaxed.owl mannoside alpha-1,4-exomannosidase activity|alpha-1,4-exomannosidase activity|mannoside exo-alpha-1,4-mannosidase activity|alpha-1,4-mannosidase activity ai 2011-09-30T12:55:24Z molecular_function owl:Class GO:0030285 biolink:NamedThing integral component of synaptic vesicle membrane The component of the synaptic vesicle membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl integral to synaptic vesicle membrane cellular_component owl:Class GO:0051787 biolink:NamedThing misfolded protein binding Binding to a misfolded protein. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5324632 molecular_function owl:Class GO:0018596 biolink:NamedThing dimethylsilanediol hydroxylase activity Catalysis of the reaction: dimethylsilanediol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylmethylsilanediol. tmpzr1t_l9r_go_relaxed.owl DMSD hydroxylase activity UM-BBD_reactionID:r0637 molecular_function owl:Class GO:0034797 biolink:NamedThing fosfomycin 2-glutathione ligase activity Catalysis of the reaction: hydrogen (2R,3S)-3-methyloxiran-2-ylphosphonic acid + glutathione = hydrogen (1R,2R)-1-glutathio-2-hydroxypropylphosphonic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1073 molecular_function owl:Class GO:0044083 biolink:NamedThing modulation by symbiont of host Rho protein signal transduction Any process in which a symbiont organism modulates the frequency, rate or extent of Rho protein signal transduction in its host organism. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host Rho protein-mediated signal transduction|modulation by symbiont of host Rho protein mediated signal transduction|modulation of host Rho protein signaling by symbiont|regulation by symbiont of host Rho protein signal transduction|modulation of host Rho protein signal transduction by symbiont|modulation of host Rho protein signalling by symbiont biological_process owl:Class GO:0015652 biolink:NamedThing quaternary ammonium group:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: quaternary ammonium group(out) + H+(out) = quaternary ammonium group(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl quaternary ammonium group:hydrogen symporter activity molecular_function owl:Class GO:0033323 biolink:NamedThing choline biosynthetic process via CDP-choline The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate CDP-choline. tmpzr1t_l9r_go_relaxed.owl choline biosynthesis via CDP-choline|choline formation via CDP-choline|choline synthesis via CDP-choline|choline anabolism via CDP-choline MetaCyc:PWY-4762|MetaCyc:PWY-3561 biological_process owl:Class GO:1902728 biolink:NamedThing positive regulation of growth factor dependent skeletal muscle satellite cell proliferation Any process that activates or increases the frequency, rate or extent of satellite cell proliferation; dependent on specific growth factor activity such as fibroblast growth factors and transforming growth factor beta. tmpzr1t_l9r_go_relaxed.owl mr 2014-02-24T16:10:33Z biological_process owl:Class GO:2000287 biolink:NamedThing positive regulation of myotome development Any process that activates or increases the frequency, rate or extent of myotome development. tmpzr1t_l9r_go_relaxed.owl rl 2010-12-16T05:17:15Z biological_process owl:Class GO:0052712 biolink:NamedThing inositol phosphosphingolipid phospholipase activity Catalysis of the reaction: inositol phosphosphingolipid + H2O = sphingolipid + phosphorylinositol. tmpzr1t_l9r_go_relaxed.owl ai 2011-08-05T04:49:13Z molecular_function owl:Class GO:0055079 biolink:NamedThing aluminum ion homeostasis Any process involved in the maintenance of an internal steady state of aluminum ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl aluminium ion homeostasis biological_process owl:Class GO:0043817 biolink:NamedThing phosphosulfolactate synthase activity Catalysis of the reaction: (2R)-O-phospho-3-sulfolactate = phosphoenolpyruvate + sulfite. tmpzr1t_l9r_go_relaxed.owl (2R)-O-phospho-3-sulfolactate sulfo-lyase activity|(2R)-phospho-3-sulfolactate synthase activity|PSL synthase activity|(2R)-O-phospho-3-sulfolactate sulfo-lyase (phosphoenolpyruvate-forming) EC:4.4.1.19|RHEA:22784|MetaCyc:R228-RXN|MetaCyc:4.4.1.19-RXN|KEGG_REACTION:R07476 molecular_function owl:Class GO:1901908 biolink:NamedThing diadenosine hexaphosphate metabolic process The chemical reactions and pathways involving diadenosine hexaphosphate. tmpzr1t_l9r_go_relaxed.owl diadenosyl hexaphosphate metabolism|diadenosine hexaphosphate metabolism|diadenosyl hexaphosphate metabolic process al 2013-02-13T13:50:40Z biological_process owl:Class GO:0030507 biolink:NamedThing spectrin binding Binding to spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902258 biolink:NamedThing positive regulation of apoptotic process involved in outflow tract morphogenesis Any process that activates or increases the frequency, rate or extent of apoptotic process involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of apoptotic process involved in outflow tract morphogenesis|up-regulation of apoptosis involved in outflow tract morphogenesis|activation of apoptosis involved in outflow tract morphogenesis|activation of apoptotic process involved in outflow tract morphogenesis|upregulation of apoptotic process involved in outflow tract morphogenesis|upregulation of apoptosis involved in outflow tract morphogenesis|up regulation of apoptosis involved in outflow tract morphogenesis|up regulation of apoptotic process involved in outflow tract morphogenesis|positive regulation of apoptosis involved in outflow tract morphogenesis dph 2013-06-24T19:12:42Z biological_process owl:Class GO:1902711 biolink:NamedThing GABA-A receptor complex A protein complex which is capable of GABA-A receptor activity. In human, it is usually composed of either two alpha, two beta and one gamma chain of the GABA-A receptor subunits or 5 chains of the GABA-A receptor subunits rho1-3 (formally known as GABA-C receptor). tmpzr1t_l9r_go_relaxed.owl An example of this is GBRA1 in human (UniProt symbol P14867) in PMID:18790874. bhm 2014-02-21T09:19:58Z cellular_component owl:Class GO:2000743 biolink:NamedThing negative regulation of anterior head development Any process that stops, prevents or reduces the frequency, rate or extent of anterior head development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T09:44:14Z biological_process owl:Class GO:0018470 biolink:NamedThing 4-hydroxybutaraldehyde dehydrogenase activity Catalysis of the reaction: 4-hydroxybutyraldehyde + H2O = 2 H+ + 2 e- + 4-hydroxybutanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0014 molecular_function owl:Class GO:0031208 biolink:NamedThing POZ domain binding Binding to a POZ (poxvirus and zinc finger) domain of a protein, a protein-protein interaction domain found in many transcription factors. tmpzr1t_l9r_go_relaxed.owl BTB domain|broad-complex, tramtrack, and bric-a-brac domain binding molecular_function owl:Class GO:0003833 biolink:NamedThing beta-alanyl-dopamine synthase activity Catalysis of the synthesis of beta-alanyl-dopamine from the precursor dopamine (3,4-dihydroxyphenylethylamine). tmpzr1t_l9r_go_relaxed.owl N-beta-alanyl dopamine synthetase activity|NBAD transferase activity molecular_function owl:Class GO:0019161 biolink:NamedThing diamine transaminase activity Catalysis of the reaction: an alpha,omega-diamine + 2-oxoglutarate = an omega-aminoaldehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl diamine-ketoglutaric transaminase activity|diamine aminotransferase activity|diamine:2-oxoglutarate aminotransferase activity|amine transaminase activity|amine-ketoacid transaminase activity MetaCyc:DIAMTRANSAM-RXN|RHEA:18217|EC:2.6.1.29 molecular_function owl:Class GO:0030735 biolink:NamedThing carnosine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + carnosine = S-adenosyl-L-homocysteine + anserine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:carnosine N-methyltransferase activity KEGG_REACTION:R02144|EC:2.1.1.22|RHEA:14205|Reactome:R-HSA-8876789|MetaCyc:CARNOSINE-N-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0070533 biolink:NamedThing BRCA1-C complex A protein complex that contains the BRCA1-BARD1 heterodimer, CtIP and Mre11/Rad50/NBS1 (M/R/N) complex, and binds to DNA at DNA damage sites. BRCA1-C binding ta damaged DNA is required for DNA damage-induced Chk1 phosphorylation and the G2/M transition checkpoint. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048238 biolink:NamedThing smooth endoplasmic reticulum lumen The volume enclosed by the membranes of the smooth endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl smooth ER lumen|SER lumen NIF_Subcellular:sao927884761 cellular_component owl:Class GO:0102031 biolink:NamedThing 4-acetamido-4,6-dideoxy-D-galactose transferase activity Catalysis of the reaction: dTDP-4-acetamido-4,6-dideoxy-alpha-D-galactose + beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-1-diphospho-ditrans,polycis-undecaprenol <=> H+ + alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate + dTDP. tmpzr1t_l9r_go_relaxed.owl RHEA:28759|EC:2.4.1.325|MetaCyc:FUC4NACTRANS-RXN molecular_function owl:Class GO:1903905 biolink:NamedThing positive regulation of establishment of T cell polarity Any process that activates or increases the frequency, rate or extent of establishment of T cell polarity. tmpzr1t_l9r_go_relaxed.owl upregulation of T lymphocyte polarization|up-regulation of T-cell polarization|positive regulation of establishment of T-cell polarity|up-regulation of establishment of T lymphocyte polarity|upregulation of T-cell polarization|upregulation of T cell polarization|positive regulation of T-cell polarization|upregulation of establishment of T-lymphocyte polarity|activation of establishment of T cell polarity|up regulation of T cell polarization|up-regulation of establishment of T cell polarity|up regulation of establishment of T cell polarity|up-regulation of T lymphocyte polarization|activation of T cell polarization|positive regulation of T lymphocyte polarization|up regulation of establishment of T-lymphocyte polarity|positive regulation of establishment of T lymphocyte polarity|up regulation of establishment of T-cell polarity|activation of T-cell polarization|positive regulation of T cell polarization|up regulation of T lymphocyte polarization|up regulation of establishment of T lymphocyte polarity|activation of establishment of T-cell polarity|upregulation of establishment of T lymphocyte polarity|activation of establishment of T-lymphocyte polarity|up-regulation of T cell polarization|activation of T lymphocyte polarization|up regulation of T-cell polarization|up-regulation of establishment of T-cell polarity|upregulation of establishment of T-cell polarity|up-regulation of establishment of T-lymphocyte polarity|activation of establishment of T lymphocyte polarity|upregulation of establishment of T cell polarity|positive regulation of establishment of T-lymphocyte polarity als 2015-02-09T10:50:40Z biological_process owl:Class GO:1901749 biolink:NamedThing leukotriene D4 catabolic process The chemical reactions and pathways resulting in the breakdown of leukotriene D4. tmpzr1t_l9r_go_relaxed.owl leukotriene D4 degradation|leukotriene D4 catabolism|leukotriene D4 breakdown yaf 2013-01-14T10:56:17Z biological_process owl:Class GO:0071658 biolink:NamedThing regulation of IP-10 production Any process that modulates the frequency, rate, or extent of production of IP-10. tmpzr1t_l9r_go_relaxed.owl regulation of chemokine (C-C motif) ligand 10 production|regulation of CXCL10 production mah 2010-02-12T10:41:14Z biological_process owl:Class GO:0008948 biolink:NamedThing oxaloacetate decarboxylase activity Catalysis of the reaction: oxaloacetate = pyruvate + CO2. tmpzr1t_l9r_go_relaxed.owl oxaloacetate carboxy-lyase (pyruvate-forming)|oxalate beta-decarboxylase activity|oxalacetic acid decarboxylase activity|oxaloacetate carboxy-lyase activity|oxaloacetate beta-decarboxylase activity MetaCyc:OXALODECARB-RXN|EC:1.1.1.38|EC:1.1.1.40|EC:4.1.1.112|Reactome:R-HSA-9012016|KEGG_REACTION:R00217|RHEA:15641 molecular_function owl:Class GO:1904270 biolink:NamedThing pyroptosome complex assembly The aggregation, arrangement and bonding together of a set of components to form a pyroptosome complex. tmpzr1t_l9r_go_relaxed.owl ASC pyroptosome assembly|pyroptosome complex formation|ASC pyroptosome formation lb 2015-05-29T08:25:45Z biological_process owl:Class GO:0043512 biolink:NamedThing inhibin A complex Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit. tmpzr1t_l9r_go_relaxed.owl Note that the actions of the inhibin complex are the opposite of those of the activin complex, which is a dimer of an inhibin beta-A and/or inhibin beta-B subunit. See also the cellular component term 'activin complex ; GO:0048180'. cellular_component owl:Class GO:0019860 biolink:NamedThing uracil metabolic process The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. tmpzr1t_l9r_go_relaxed.owl uracil metabolism biological_process owl:Class GO:0090294 biolink:NamedThing nitrogen catabolite activation of transcription A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription by nitrogen catabolites tb 2010-02-24T02:31:53Z biological_process owl:Class GO:0019917 biolink:NamedThing peptidyl-D-alanine racemization via peptidyl-L-serine The dehydration of peptidyl-serine, followed by hydrogenation to produce peptidyl-D-alanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0191 biological_process owl:Class GO:0031179 biolink:NamedThing peptide modification The covalent alteration of one or more amino acid residues within a peptide, resulting in a change in the properties of that peptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070149 biolink:NamedThing mitochondrial glutamyl-tRNA aminoacylation The process of coupling glutamate to glutamyl-tRNA in a mitochondrion, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006424 biolink:NamedThing glutamyl-tRNA aminoacylation The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903572 biolink:NamedThing positive regulation of protein kinase D signaling Any process that activates or increases the frequency, rate or extent of protein kinase D signaling. tmpzr1t_l9r_go_relaxed.owl activation of PKD signal transduction|up-regulation of PKD signaling cascade|up-regulation of protein kinase D signaling|up regulation of protein kinase D signal transduction|upregulation of protein kinase D signaling cascade|upregulation of PKD signal transduction|up regulation of PKD signal transduction|positive regulation of protein kinase D signal transduction|activation of PKD signaling cascade|up-regulation of PKD signal transduction|positive regulation of PKD signal transduction|activation of protein kinase D signaling cascade|positive regulation of protein kinase D signalling cascade|positive regulation of protein kinase D signaling cascade|upregulation of protein kinase D signaling|up-regulation of protein kinase D signal transduction|upregulation of protein kinase D signalling cascade|up regulation of PKD signaling cascade|activation of protein kinase D signalling cascade|upregulation of PKD signaling cascade|upregulation of protein kinase D signal transduction|activation of protein kinase D signaling|up-regulation of protein kinase D signalling cascade|activation of protein kinase D signal transduction|up regulation of protein kinase D signalling cascade|up regulation of protein kinase D signaling cascade|up-regulation of protein kinase D signaling cascade|positive regulation of PKD signaling cascade|up regulation of protein kinase D signaling rl 2014-10-27T15:18:18Z biological_process owl:Class GO:0072754 biolink:NamedThing cellular response to purvalanol A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purvalanol A stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-07T12:05:57Z biological_process owl:Class GO:1901560 biolink:NamedThing response to purvalanol A Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purvalanol A stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-02T15:32:28Z biological_process owl:Class GO:0007355 biolink:NamedThing anterior region determination Specification of the anterior (head and thoracic segments) of the embryo by the gap genes; exemplified in insects by the actions of hunchback gene product. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075038 biolink:NamedThing negative regulation of appressorium maturation Any process that stops, prevents, or reduces the frequency, rate or extent symbiont appressorium maturation. tmpzr1t_l9r_go_relaxed.owl negative regulation of maturation of appressorium on or near host|negative regulation of appressorium maturation on or near host biological_process owl:Class GO:0062151 biolink:NamedThing catalase complex A protein-containing complex that is capable of catalase activity. tmpzr1t_l9r_go_relaxed.owl dph 2019-09-17T12:18:02Z cellular_component owl:Class GO:0035617 biolink:NamedThing stress granule disassembly The disaggregation of a stress granule into its constituent protein and RNA parts. tmpzr1t_l9r_go_relaxed.owl SG disassembly bf 2010-12-03T10:38:57Z biological_process owl:Class GO:0090363 biolink:NamedThing regulation of proteasome core complex assembly Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. tmpzr1t_l9r_go_relaxed.owl tb 2010-07-12T10:48:57Z biological_process owl:Class GO:0018120 biolink:NamedThing peptidyl-arginine ADP-ribosylation The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0168 biological_process owl:Class GO:0047911 biolink:NamedThing galacturan 1,4-alpha-galacturonidase activity Catalysis of the reaction: [(1->4)-alpha-D-galacturonide](n) + H2O = [(1->4)-alpha-D-galacturonide](n-1) + D-galacturonate. tmpzr1t_l9r_go_relaxed.owl exo-D-galacturonase activity|exo-polygalacturonase activity|exo-D-galacturonanase activity|poly(1,4-alpha-D-galacturonide) galacturonohydrolase activity|exopolygalacturonase activity|exopoly-D-galacturonase activity|galacturan alpha-1,4-galacturonidase activity|poly(galacturonate) hydrolase activity MetaCyc:GALACTURAN-14-ALPHA-GALACTURONIDASE-RXN|RHEA:14117|EC:3.2.1.67 molecular_function owl:Class GO:0001762 biolink:NamedThing beta-alanine transport The directed movement of beta-alanine, 3-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001080 biolink:NamedThing nitrogen catabolite activation of transcription from RNA polymerase II promoter A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter by nitrogen catabolites krc 2010-10-27T03:32:34Z biological_process owl:Class GO:0051730 biolink:NamedThing GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity Catalysis of the reaction: GTP + 5'-dephospho-RNA = GDP + 5'-phospho-RNA. tmpzr1t_l9r_go_relaxed.owl GTP-dependent RNA kinase activity|GTP-dependent RNA 5'-hydroxyl-kinase activity|GTP:5'-dephosphopolyribonucleotide 5'-phosphotransferase activity|GTP-dependent polynucleotide 5'-hydroxyl-kinase activity|GTP-dependent polyribonucleotide kinase activity molecular_function owl:Class GO:0034584 biolink:NamedThing piRNA binding Binding to a piRNA, a Piwi-associated RNA, a 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. tmpzr1t_l9r_go_relaxed.owl Piwi-associated RNA binding molecular_function owl:Class GO:0061980 biolink:NamedThing regulatory RNA binding Binding to a small regulatory RNA, a short RNA (usually 50-200 nt long) that is either independently transcribed or processed from a longer RNA by an RNAse enzyme. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-13T21:46:08Z molecular_function owl:Class GO:0110103 biolink:NamedThing RNA polymerase II termination complex A conserved protein complex capable of 5'-3' exoribonuclease activity. It is able to promote RNA polymerase II (RNAPII) transcription termination by degrading pre-mRNA from the newly formed 5' phosphorylated end. tmpzr1t_l9r_go_relaxed.owl TXT complex In S. cerevisiae, this complex is formed by RAI1 and RAT1; in H. sapiens it is formed by Twi12, Xrn2 and Tan1. kmv 2018-03-16T18:55:17Z cellular_component owl:Class GO:0071478 biolink:NamedThing cellular response to radiation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation. tmpzr1t_l9r_go_relaxed.owl cellular response to radiation stimulus|cellular response to electromagnetic radiation stimulus Note that 'radiation' refers to electromagnetic radiation of any wavelength. mah 2009-12-18T01:59:37Z biological_process owl:Class GO:0052864 biolink:NamedThing 1-deoxy-D-xylulose 5-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of 1-deoxy-D-xylulose 5-phosphate, the 5-phospho derivative of 1-deoxy-D-xylulose. 1-deoxy-D-xylulose 5-phosphate is an intermediate in the non-mevalonate pathway and a common precursor for isoprenoid, thiamin, and pyridoxol biosynthesis. tmpzr1t_l9r_go_relaxed.owl (2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate catabolic process|1-deoxy-D-xylulose 5-phosphate degradation|1-deoxy-D-xylulose 5-phosphate catabolism|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate catabolism|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate breakdown|(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate degradation|1-deoxy-D-xylulose 5-phosphate breakdown biological_process owl:Class GO:2000096 biolink:NamedThing positive regulation of Wnt signaling pathway, planar cell polarity pathway Any process that activates or increases the frequency, rate or extent of Wnt signaling pathway, planar cell polarity pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of PCP pathway|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway|positive regulation of Wnt receptor signalling pathway, planar cell polarity pathway|positive regulation of non-canonical Wnt signaling pathway|positive regulation of Wnt-JNK signaling pathway|positive regulation of Wnt-PCP signaling pathway|positive regulation of Wnt-activated signaling pathway, planar cell polarity pathway jl 2010-09-08T01:07:42Z biological_process owl:Class GO:0071678 biolink:NamedThing olfactory bulb axon guidance The process in which the migration of an axon growth cone of a neuron in the olfactory bulb is directed to its target in the brain in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl olfactory bulb axon pathfinding mah 2010-02-17T02:09:34Z biological_process owl:Class GO:0047052 biolink:NamedThing (S)-stylopine synthase activity Catalysis of the reaction: (S)-cheilanthifoline + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-stylopine + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl (S)-cheilanthifoline,NADPH:oxygen oxidoreductase (methylenedioxy-bridge-forming)|(S)-cheilanthifoline oxidase (methylenedioxy-bridge-forming) activity https://github.com/geneontology/go-ontology/issues/21133 EC:1.14.19.64|MetaCyc:1.1.3.32-RXN|RHEA:13773|KEGG_REACTION:R04690 molecular_function owl:Class GO:0097276 biolink:NamedThing cellular creatinine homeostasis Any biological process involved in the maintenance of an internal steady state of creatinine at the level of the cell. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-22T02:55:46Z biological_process owl:Class GO:0015870 biolink:NamedThing acetylcholine transport The directed movement of acetylcholine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acetylcholine is an acetic acid ester of the organic base choline and functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042773 biolink:NamedThing ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019034 biolink:NamedThing viral replication complex Specific locations and structures in the virus infected cell involved in replicating the viral genome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072208 biolink:NamedThing metanephric smooth muscle tissue development The process whose specific outcome is the progression of smooth muscle in the metanephros over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T11:51:59Z biological_process owl:Class GO:0080129 biolink:NamedThing proteasome core complex assembly The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. tmpzr1t_l9r_go_relaxed.owl 20S proteasome assembly dhl 2009-04-29T03:34:50Z biological_process owl:Class GO:1902269 biolink:NamedThing positive regulation of polyamine transmembrane transport Any process that activates or increases the frequency, rate or extent of polyamine transmembrane transport. tmpzr1t_l9r_go_relaxed.owl activation of polyamine transmembrane transport|up regulation of polyamine transmembrane transport|upregulation of polyamine transmembrane transport|up-regulation of polyamine transmembrane transport mcc 2013-06-28T21:34:47Z biological_process owl:Class GO:0062031 biolink:NamedThing filamentous growth MAPK cascade The MAPK cascade which is activated as a result of partial nutrient deprivation and which results in filamentous growth. tmpzr1t_l9r_go_relaxed.owl dph 2018-04-17T15:18:44Z biological_process owl:Class GO:0008145 biolink:NamedThing phenylalkylamine binding Binding to phenylalkylamine or one of its derivatives. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047096 biolink:NamedThing androst-4-ene-3,17-dione monooxygenase activity Catalysis of the reaction: AH(2) + androst-4-ene-3,17-dione + O(2) = A + H(2)O + testololactone. tmpzr1t_l9r_go_relaxed.owl 4-androstene-3,17-dione monooxygenase activity|androstene-3,17-dione hydroxylase activity|androstenedione monooxygenase activity|androst-4-ene-3,17-dione 17-oxidoreductase activity|androst-4-ene-3,17-dione hydroxylase activity|androst-4-ene-3,17-dione-hydrogen-donor:oxygen oxidoreductase (13-hydroxylating, lactonizing) KEGG_REACTION:R01833|RHEA:22696|EC:1.14.99.12|MetaCyc:1.14.99.12-RXN molecular_function owl:Class GO:0047444 biolink:NamedThing N-acylneuraminate-9-phosphate synthase activity Catalysis of the reaction: H2O + phosphoenolpyruvate + N-acyl-D-mannosamine 6-phosphate = phosphate + N-acylneuraminate 9-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetylneuraminic acid phosphate synthase activity|phosphoenolpyruvate:N-acyl-D-mannosamine-6-phosphate 1-(2-carboxy-2-oxoethyl)transferase activity|N-acylneuraminate-9-phosphate pyruvate-lyase (pyruvate-phosphorylating) activity|N-acetylneuraminate 9-phosphate sialic acid 9-phosphate synthase activity|N-acetylneuraminate 9-phosphate lyase activity|sialic acid 9-phosphate synthetase activity|N-acetylneuraminate 9-phosphate synthetase activity RHEA:13421|Reactome:R-HSA-4084976|MetaCyc:4.1.3.20-RXN|EC:2.5.1.57 GO:0019007 molecular_function owl:Class GO:0061553 biolink:NamedThing ganglion maturation A developmental process, independent of morphogenetic (shape) change, that is required for ganglion to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl ganglia maturation dph 2013-07-10T08:45:59Z biological_process owl:Class GO:0008747 biolink:NamedThing N-acetylneuraminate lyase activity Catalysis of the reaction: N-acetylneuraminate = N-acetyl-D-mannosamine + pyruvate. tmpzr1t_l9r_go_relaxed.owl sialic aldolase activity|acetylneuraminate lyase activity|N-acetylneuraminic lyase activity|N-acetylneuraminic aldolase activity|neuraminic acid aldolase activity|NANA lyase activity|N-acetylneuraminate pyruvate-lyase activity|neuraminate aldolase activity|N-acetylneuraminic acid aldolase activity|N-acetylneuraminic acid lyase activity|NPL|sialic acid aldolase activity|N-acetylneuraminate aldolase activity|N-acetylneuraminate pyruvate-lyase (N-acetyl-D-mannosamine-forming)|acetylneuraminate pyruvate-lyase activity|neuraminic aldolase activity|NALase activity|sialate lyase activity Reactome:R-HSA-4085217|EC:4.1.3.3|RHEA:23296|MetaCyc:ACNEULY-RXN|KEGG_REACTION:R01811 molecular_function owl:Class GO:0070690 biolink:NamedThing L-threonine catabolic process to acetyl-CoA The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) into glycine and acetaldehyde, with acetaldehyde being subsequently converted to acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl L-threonine catabolism to acetyl-CoA|L-threonine degradation to acetyl-CoA|L-threonine breakdown to acetyl-CoA|threonine catabolic process to acetyl-CoA MetaCyc:PWY-5436 mah 2009-06-03T01:40:22Z biological_process owl:Class GO:0031372 biolink:NamedThing UBC13-MMS2 complex A heterodimeric ubiquitin conjugating enzyme complex that catalyzes assembly of K63-linked polyubiquitin chains, which act as a signal to promote error-free DNA postreplication repair; in Saccharomyces the complex comprises Ubc13p and Mms2p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047574 biolink:NamedThing 4-acetamidobutyryl-CoA deacetylase activity Catalysis of the reaction: 4-acetamidobutanoyl-CoA + H(2)O = 4-aminobutanoyl-CoA + acetate. tmpzr1t_l9r_go_relaxed.owl deacetylase-thiolesterase activity|aminobutyryl-CoA thiolesterase activity|4-acetamidobutanoyl-CoA amidohydrolase activity RHEA:22928|MetaCyc:4-ACETAMIDOBUTYRYL-COA-DEACETYLASE-RXN|KEGG_REACTION:R04056|EC:3.5.1.51 molecular_function owl:Class GO:1900760 biolink:NamedThing negative regulation of sterigmatocystin biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of sterigmatocystin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl inhibition of sterigmatocystin biosynthesis|downregulation of sterigmatocystin formation|downregulation of sterigmatocystin biosynthesis|down-regulation of sterigmatocystin synthesis|downregulation of sterigmatocystin biosynthetic process|down-regulation of sterigmatocystin anabolism|negative regulation of sterigmatocystin synthesis|down regulation of sterigmatocystin anabolism|negative regulation of sterigmatocystin biosynthesis|inhibition of sterigmatocystin synthesis|downregulation of sterigmatocystin synthesis|down regulation of sterigmatocystin formation|down regulation of sterigmatocystin biosynthesis|inhibition of sterigmatocystin anabolism|downregulation of sterigmatocystin anabolism|negative regulation of sterigmatocystin anabolism|down-regulation of sterigmatocystin biosynthesis|inhibition of sterigmatocystin formation|down regulation of sterigmatocystin biosynthetic process|inhibition of sterigmatocystin biosynthetic process|down-regulation of sterigmatocystin formation|down regulation of sterigmatocystin synthesis|down-regulation of sterigmatocystin biosynthetic process|negative regulation of sterigmatocystin formation di 2012-06-04T08:38:30Z biological_process owl:Class GO:1902704 biolink:NamedThing hexose catabolic process to acetone The chemical reactions and pathways resulting in the breakdown of hexose to acetone. tmpzr1t_l9r_go_relaxed.owl solventogenesis|hexose breakdown to acetone|hexose catabolic process to 2-propanone|hexose catabolism to acetone|hexose degradation to acetone tb 2014-02-19T18:43:13Z GO:1990285 biological_process owl:Class GO:0021514 biolink:NamedThing ventral spinal cord interneuron differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of ventral spinal cord interneurons. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102484 biolink:NamedThing esculetin glucosyltransferase activity Catalysis of the reaction: esculetin + UDP-alpha-D-glucose(2-) <=> esculin + UDP(3-) + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14182 molecular_function owl:Class GO:0008818 biolink:NamedThing cobalamin 5'-phosphate synthase activity Catalysis of the reaction: adenosylcobinamide-GDP + alpha-ribazole-5'-phosphate = adenosylcobalamin-5'-phosphate + GMP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:COBALAMIN5PSYN-RXN|RHEA:23560 molecular_function owl:Class GO:0047014 biolink:NamedThing glycerol-3-phosphate 1-dehydrogenase [NADP+] activity Catalysis of the reaction: sn-glycerol 3-phosphate + NADP(+) = D-glyceraldehyde 3-phosphate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl sn-glycerol-3-phosphate:NADP+ 1-oxidoreductase activity|glycerin-3-phosphate dehydrogenase activity|NADPH-dependent glycerin-3-phosphate dehydrogenase activity|L-glycerol 3-phosphate:NADP oxidoreductase activity|glycerol phosphate (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity RHEA:19773|EC:1.1.1.177|KEGG_REACTION:R00845|MetaCyc:1.1.1.177-RXN molecular_function owl:Class GO:0005988 biolink:NamedThing lactose metabolic process The chemical reactions and pathways involving lactose, the disaccharide galactopyranosyl-glucose. tmpzr1t_l9r_go_relaxed.owl lactose metabolism biological_process owl:Class GO:0008866 biolink:NamedThing fructuronate reductase activity Catalysis of the reaction: D-mannonate + NAD(+) = D-fructuronate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-mannonate:NAD oxidoreductase activity|mannonic dehydrogenase activity|mannonate oxidoreductase activity|D-mannonate dehydrogenase activity|D-mannonate:NAD+ 5-oxidoreductase activity|D-mannonate oxidoreductase activity RHEA:15729|MetaCyc:MANNONOXIDOREDUCT-RXN|KEGG_REACTION:R02454|EC:1.1.1.57 molecular_function owl:Class GO:0047324 biolink:NamedThing phosphoenolpyruvate-glycerone phosphotransferase activity Catalysis of the reaction: glycerone + phosphoenolpyruvate = glycerone phosphate + pyruvate. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate:glycerone phosphotransferase activity EC:2.7.1.121|KEGG_REACTION:R01012|RHEA:18381|MetaCyc:2.7.1.121-RXN molecular_function owl:Class GO:1901125 biolink:NamedThing candicidin metabolic process The chemical reactions and pathways involving candicidin. tmpzr1t_l9r_go_relaxed.owl candicidin metabolism yaf 2012-07-11T03:16:32Z biological_process owl:Class GO:0042370 biolink:NamedThing thiamine diphosphate dephosphorylation The removal of one or more phosphate groups from thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. tmpzr1t_l9r_go_relaxed.owl TPP dephosphorylation|thiamin diphosphate dephosphorylation biological_process owl:Class GO:0071858 biolink:NamedThing corazonin receptor binding Binding to a corazonin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:23:40Z molecular_function owl:Class GO:0002401 biolink:NamedThing tolerance induction in mucosal-associated lymphoid tissue Tolerance induction taking place in the mucosal-associated lymphoid tissue (MALT). tmpzr1t_l9r_go_relaxed.owl tolerance induction in MALT biological_process owl:Class GO:1990659 biolink:NamedThing sequestering of manganese ion The process of binding or confining manganese ions such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl manganese ion storage|storage of manganese ion|retention of manganese ion|manganese ion sequestration|manganese ion sequestering|manganese ion retention|sequestration of manganese ion An example of this is S100A9 in human (UniProt symbol P06702) in PMID:25417112 (inferred from direct assay). bhm 2015-02-25T11:41:12Z biological_process owl:Class GO:0034376 biolink:NamedThing conversion of discoidal high-density lipoprotein particle to spherical high-density lipoprotein particle The process in which a discoidal high-density lipoprotein (HDL) particle acquires additional lipid or protein molecules, and cholesterol in the particle is converted to tightly bound cholesterol esters by the action of phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT), resulting in the formation of a spherical HDL particle. tmpzr1t_l9r_go_relaxed.owl conversion of discoidal HDL to spherical HDL|discoidal HDL remodeling|discoidal high-density lipoprotein remodeling biological_process owl:Class GO:0036116 biolink:NamedThing long-chain fatty-acyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a medium-chain fatty-acyl group. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain fatty-acyl-CoA degradation|long-chain fatty-acyl-CoA breakdown|long-chain fatty-acyl-CoA catabolism bf 2012-02-15T11:30:24Z biological_process owl:Class GO:1905509 biolink:NamedThing protein localization to interphase microtubule organizing center A process in which a protein is transported to, or maintained in, a location within an interphase microtubule organizing center. tmpzr1t_l9r_go_relaxed.owl protein localisation to interphase microtubule organizing center|protein localisation in interphase microtubule organizing center|protein localization in interphase microtubule organizing center mah 2016-09-28T12:32:24Z biological_process owl:Class GO:0004733 biolink:NamedThing pyridoxamine-phosphate oxidase activity Catalysis of the reaction: pyridoxamine 5'-phosphate + H2O + O2 = pyridoxal 5'-phosphate + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl pyridoxine (pyridoxamine)phosphate oxidase activity|pyridoxamine phosphate oxidase activity|pyridoxine (pyridoxamine) 5'-phosphate oxidase activity|pyridoxal 5'-phosphate synthase activity|PMP oxidase activity|PdxH|pyridoxaminephosphate oxidase deaminating|pyridoxamine 5'-phosphate oxidase activity|pyridoxamine-5'-phosphate:oxygen oxidoreductase (deaminating)|pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) MetaCyc:PMPOXI-RXN|EC:1.4.3.5|RHEA:15817|Reactome:R-HSA-965019|Reactome:R-HSA-965079 molecular_function owl:Class GO:0071641 biolink:NamedThing negative regulation of macrophage inflammatory protein 1 alpha production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha. tmpzr1t_l9r_go_relaxed.owl negative regulation of CCL3 production|negative regulation of MIP-1a production|negative regulation of macrophage inflammatory protein production|negative regulation of chemokine (C-C motif) ligand 3 production mah 2010-02-12T10:39:51Z biological_process owl:Class GO:0047102 biolink:NamedThing aminomuconate-semialdehyde dehydrogenase activity Catalysis of the reaction: H2O + NAD+ + 2-aminomuconate semialdehyde = NADH + 2-amino-muconate. tmpzr1t_l9r_go_relaxed.owl 2-aminomuconate-6-semialdehyde:NAD+ 6-oxidoreductase activity|2-hydroxymuconic semialdehyde dehydrogenase activity|2-hydroxymuconic acid semialdehyde dehydrogenase activity|alpha-aminomuconic epsilon-semialdehyde dehydrogenase activity|2-aminomuconate semialdehyde dehydrogenase activity|2-hydroxymuconate semialdehyde dehydrogenase activity|alpha-hydroxymuconic epsilon-semialdehyde dehydrogenase activity Reactome:R-HSA-71239|MetaCyc:1.2.1.32-RXN|RHEA:14469|EC:1.2.1.32|UM-BBD_reactionID:r1434 molecular_function owl:Class GO:0062226 biolink:NamedThing regulation of adult somatic muscle development Any process that modulates the rate, frequency or extent of adult somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:24:07Z biological_process owl:Class GO:0036047 biolink:NamedThing peptidyl-lysine demalonylation The process of removing a malonyl group (CO-CH2-CO) from an malonylated lysine residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T09:39:17Z biological_process owl:Class GO:0099138 biolink:NamedThing altruistic, chimeric sorocarp development Development of a chimeric sorocarp in which cells of all genotypes have an equal chance of becoming a spore cell. tmpzr1t_l9r_go_relaxed.owl fully co-operative, chimeric sorocarp development biological_process owl:Class GO:0031673 biolink:NamedThing H zone A relatively pale zone traversing the center of the A band of a sarcomere, visible in relaxed muscle fibers; consists of the central portion of thick (myosin) filaments that are not overlapped by thin (actin) filaments. tmpzr1t_l9r_go_relaxed.owl H disc|H band Wikipedia:Sarcomere#bands cellular_component owl:Class GO:0071483 biolink:NamedThing cellular response to blue light Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. tmpzr1t_l9r_go_relaxed.owl cellular response to blue light stimulus mah 2009-12-18T02:09:48Z biological_process owl:Class GO:0034612 biolink:NamedThing response to tumor necrosis factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to TNF biological_process owl:Class GO:1990646 biolink:NamedThing cellular response to prolactin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prolactin stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-18T16:53:11Z biological_process owl:Class GO:1990637 biolink:NamedThing response to prolactin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prolactin stimulus. The anterior pituitary hormone prolactin has a number of roles including being essential for lactation. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-10T23:47:11Z biological_process owl:Class GO:0102407 biolink:NamedThing sn-2-glycerol-3-phosphate C22:0-DCA-CoA acyl transferase activity Catalysis of the reaction: C22:0-DCA-CoA + sn-glycerol 3-phosphate <=> coenzyme A + 2-C22:0-DCA-LPA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13734 molecular_function owl:Class GO:0008745 biolink:NamedThing N-acetylmuramoyl-L-alanine amidase activity Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides. tmpzr1t_l9r_go_relaxed.owl acetylmuramoyl-alanine amidase activity|N-acetylmuramylalanine amidase activity|N-acetylmuramic acid L-alanine amidase activity|N-acylmuramyl-L-alanine amidase activity|N-acetylmuramyl-L-alanine amidase activity|acetylmuramyl-L-alanine amidase activity|N-acetylmuramoyl-L-alanine amidase type II|acetylmuramyl-alanine amidase activity|N-acetylmuramoyl-L-alanine amidase type I MetaCyc:3.5.1.28-RXN|Reactome:R-HSA-6799977|EC:3.5.1.28 molecular_function owl:Class GO:0030723 biolink:NamedThing ovarian fusome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fusome of ovarian cells, an organelle derived from the spectrosome. It anchors the mitotic spindle pole to provide orientation during cystoblast cell divisions. tmpzr1t_l9r_go_relaxed.owl ovarian fusome organisation|ovarian fusome organization and biogenesis biological_process owl:Class GO:0051699 biolink:NamedThing proline oxidase activity Catalysis of the reaction: L-proline + O2 + H2O = L-delta1-pyrroline-5-carboxylate + H2O2. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-821|RHEA:26124 molecular_function owl:Class GO:0035180 biolink:NamedThing larval wandering behavior The movement of a third instar larva through a substrate in search of a pupation site. This movement occurs without feeding and is characterized by short bursts of forward movement, separated by stops and repeated side-to-side head probes, followed normally by a change in direction. tmpzr1t_l9r_go_relaxed.owl larval wandering behaviour biological_process owl:Class GO:0019547 biolink:NamedThing arginine catabolic process to ornithine The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine. tmpzr1t_l9r_go_relaxed.owl arginine degradation to ornithine|arginine breakdown to ornithine biological_process owl:Class GO:0097226 biolink:NamedThing sperm mitochondrial sheath The tightly packed helical sheath of ATP-producing mitochondria restricted to the midpiece of the sperm flagellum. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-25T01:25:08Z cellular_component owl:Class GO:0097658 biolink:NamedThing Asi complex A nuclear ubiquitin ligase multiprotein complex located in the inner nuclear membrane (INM) that recognizes and ubiquitinates misfolded INM proteins and also some proteins involved in sterol biosynthesis, during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligases Asi1p and Asi3p. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-29T15:08:29Z cellular_component owl:Class GO:2001013 biolink:NamedThing epithelial cell proliferation involved in renal tubule morphogenesis Any epithelial cell proliferation that is involved in renal tubule morphogenesis. tmpzr1t_l9r_go_relaxed.owl yaf 2011-08-12T11:37:29Z biological_process owl:Class GO:0000341 biolink:NamedThing RNA trimethylguanosine cap binding Binding to the trimethylguanosine (m(3)(2,2,7)-GTP) group located at the 5' end of some RNA molecules. Such trimethylated cap structures, generally produced by posttranscriptional modification of a 7-methylguanosine cap, are often found on snRNAs and snoRNAs transcribed by RNA polymerase II, but have also be found on snRNAs transcribed by RNA polymerase III. They have also been found on a subset of the mRNA population in some species, e.g. C. elegans. tmpzr1t_l9r_go_relaxed.owl RNA m2,2,7G cap binding molecular_function owl:Class GO:0051036 biolink:NamedThing regulation of endosome size Any process that modulates the volume of an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. tmpzr1t_l9r_go_relaxed.owl endosome enlargement biological_process owl:Class GO:0060365 biolink:NamedThing coronal suture morphogenesis The process in which the coronal suture is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035928 biolink:NamedThing rRNA import into mitochondrion The process in which a rRNA, ribosomal ribonucleic acid, transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl cytoplasmic rRNA import into mitochondrion|nuclear-encoded rRNA import into mitochondrion bf 2011-07-19T09:41:42Z biological_process owl:Class GO:0120285 biolink:NamedThing tyrosine sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of tyrosine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20181 krc 2020-11-18T01:19:42Z molecular_function owl:Class GO:0046054 biolink:NamedThing dGMP metabolic process The chemical reactions and pathways involving dGMP, deoxyguanosine monophosphate (2'-deoxyguanosine 5'-phosphate). tmpzr1t_l9r_go_relaxed.owl dGMP metabolism biological_process owl:Class GO:0039651 biolink:NamedThing induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process Any process in which a virus increases the frequency, rate or extent of host cysteine-type endopeptidase activity (also called caspase activity) which contributes to the apoptotic process. tmpzr1t_l9r_go_relaxed.owl induction by virus of host caspase activity|activation of host caspases by virus bf 2012-10-09T15:44:29Z biological_process owl:Class GO:0033887 biolink:NamedThing chondro-4-sulfatase activity Catalysis of the reaction: 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine 4-sulfate + H(2)O = 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-4-sulfate 4-sulfohydrolase activity RHEA:11444|MetaCyc:CHONDRO-4-SULFATASE-RXN|EC:3.1.6.9|KEGG_REACTION:R03517 molecular_function owl:Class GO:0060545 biolink:NamedThing positive regulation of necroptotic process Any process that increases the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors. tmpzr1t_l9r_go_relaxed.owl positive regulation of necroptosis dph 2009-04-13T01:47:27Z biological_process owl:Class GO:0060544 biolink:NamedThing regulation of necroptotic process Any process that modulates the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors. tmpzr1t_l9r_go_relaxed.owl regulation of necroptosis dph 2009-04-13T01:43:22Z biological_process owl:Class GO:0120187 biolink:NamedThing positive regulation of protein localization to chromatin Any process that activates or increases the frequency, rate or extent of protein localization to chromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localisation to chromatin krc 2018-07-14T00:21:28Z biological_process owl:Class GO:1901709 biolink:NamedThing (+)-larreatricin metabolic process The chemical reactions and pathways involving (+)-larreatricin. tmpzr1t_l9r_go_relaxed.owl (+)-larreatricin metabolism ms 2012-12-19T14:44:29Z biological_process owl:Class GO:0072517 biolink:NamedThing host cell viral assembly compartment A membrane-bounded compartment that forms in the cytoplasm of the host cell, in which virus assembly takes place. tmpzr1t_l9r_go_relaxed.owl host cell viral assembly site|viral assembly site|virion assembly compartment|viral assembly compartment|host cell virion assembly compartment mah 2010-12-21T03:08:42Z GO:0072516 cellular_component owl:Class GO:0080081 biolink:NamedThing 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity Catalysis of the hydrolysis of glucosidic link in 4-methylumbelliferyl-beta-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T04:09:06Z molecular_function owl:Class GO:1905499 biolink:NamedThing trichome papilla formation The aggregation, arrangement and bonding together of a set of components to form a trichome papilla. tmpzr1t_l9r_go_relaxed.owl trichome papilla assembly tb 2016-09-27T00:28:06Z biological_process owl:Class GO:1902014 biolink:NamedThing poly(glycerol phosphate) teichoic acid biosynthetic process The chemical reactions and pathways resulting in the formation of poly(glycerol phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(glycerol phosphate) teichoic acid formation|poly(glycerol phosphate) teichoic acid biosynthesis|poly(glycerol phosphate) teichoic acid anabolism|poly(glycerol phosphate) teichoic acid synthesis tb 2013-03-22T15:43:50Z biological_process owl:Class GO:0047022 biolink:NamedThing 7-beta-hydroxysteroid dehydrogenase (NADP+) activity Catalysis of the reaction: NADP+ + a 7-beta-hydroxysteroid = NADPH + H+ + a 7-oxosteroid. tmpzr1t_l9r_go_relaxed.owl 7beta-hydroxysteroid:NADP+ 7-oxidoreductase activity|NADP-dependent 7-beta-hydroxysteroid dehydrogenase activity|NADP-dependent 7beta-hydroxysteroid dehydrogenase activity|7beta-hydroxysteroid dehydrogenase (NADP+) MetaCyc:1.1.1.201-RXN|Wikipedia:7beta-hydroxysteroid_dehydrogenase_(NADP+)|EC:1.1.1.201|RHEA:20233 molecular_function owl:Class GO:0000810 biolink:NamedThing diacylglycerol diphosphate phosphatase activity Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl DGPP phosphatase activity|diacylglycerol pyrophosphate phosphatase activity|DGPP phosphohydrolase activity RHEA:27449|EC:3.1.3.81|MetaCyc:RXN-11277 molecular_function owl:Class GO:1905838 biolink:NamedThing regulation of telomeric D-loop disassembly Any process that modulates the frequency, rate or extent of telomeric D-loop disassembly. tmpzr1t_l9r_go_relaxed.owl nc 2017-01-18T11:01:38Z biological_process owl:Class GO:0021654 biolink:NamedThing rhombomere boundary formation The process that gives rise to a rhombomere boundary. This process pertains to the initial formation of a boundary delimiting a rhombomere. Rhombomeres are transverse segments of the developing rhombencephalon that are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035778 biolink:NamedThing pronephric nephron tubule epithelial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the pronephric nephron tubule as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-04T11:07:47Z biological_process owl:Class GO:0047160 biolink:NamedThing alkylglycerophosphate 2-O-acetyltransferase activity Catalysis of the reaction: 1-alkyl-sn-glycerol 3-phosphate + acetyl-CoA = 1-alkyl-2-acetyl-sn-glycerol 3-phosphate + CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:1-alkyl-sn-glycero-3-phosphate 2-O-acetyltransferase activity|alkyllyso-GP:acetyl-CoA acetyltransferase activity RHEA:18557|KEGG_REACTION:R03455|MetaCyc:2.3.1.105-RXN|EC:2.3.1.105 molecular_function owl:Class GO:1990305 biolink:NamedThing RAD6-UBR2 ubiquitin ligase complex A ubiquitin ligase complex consisting of RAD6 and UBR2 components. It may act in a quality control pathway for proteins synthesized on cytosolic ribosomes. The UBR2 component lacks sequence motifs required for N-end rule degradation. tmpzr1t_l9r_go_relaxed.owl RAD6-UBR2 complex This complex has been identified in Saccharomyces cerevisiae (P19812) - see PMID:15504724 bhm 2014-03-03T22:14:32Z cellular_component owl:Class GO:0021989 biolink:NamedThing olfactory cortex development The progression of the olfactory cortex over time from its initial formation until its mature state. The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046025 biolink:NamedThing precorrin-6Y C5,15-methyltransferase (decarboxylating) activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + precorrin-6Y = 2 S-adenosyl-L-homocysteine + precorrin-8X + CO2. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:1-precorrin-6Y C5,15-methyltransferase (C-12-decarboxylating)|precorrin-6 methyltransferase activity|precorrin-6Y methylase activity EC:2.1.1.132|MetaCyc:2.1.1.132-RXN|RHEA:17477 molecular_function owl:Class GO:0017118 biolink:NamedThing lipoyltransferase activity Catalysis of the transfer of the lipoyl group from lipoyl-AMP to the lysine residue of lipoate-dependent enzyme. tmpzr1t_l9r_go_relaxed.owl RHEA:20473 molecular_function owl:Class GO:0009327 biolink:NamedThing NAD(P)+ transhydrogenase complex (AB-specific) A protein complex that possesses NAD(P)+ transhydrogenase (AB-specific) activity. Homodimeric, trimeric, and heterotetrameric complexes have been identified. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044295 biolink:NamedThing axonal growth cone The migrating motile tip of a growing nerve cell axon. tmpzr1t_l9r_go_relaxed.owl axon growth cone NIF_Subcellular:sao203987954|NIF_Subcellular:sao1594955670 jl 2010-02-04T03:57:16Z cellular_component owl:Class GO:0006405 biolink:NamedThing RNA export from nucleus The directed movement of RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl RNA export from cell nucleus|RNA-nucleus export|RNA transport from nucleus to cytoplasm|RNA export out of nucleus biological_process owl:Class GO:0070392 biolink:NamedThing detection of lipoteichoic acid The series of events in which a lipoteichoic acid stimulus is received by a cell and converted into a molecular signal; lipoteichoic acid is a major component of the cell wall of gram-positive bacteria and typically consists of a chain of glycerol-phosphate repeating units linked to a glycolipid anchor. tmpzr1t_l9r_go_relaxed.owl detection of LTA biological_process owl:Class GO:0032418 biolink:NamedThing lysosome localization Any process in which a lysosome is transported to, and/or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl lysosome localisation biological_process owl:Class GO:0034583 biolink:NamedThing 21U-RNA binding Binding to a 21U-RNA, a 21-nucleotide RNA characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900598 biolink:NamedThing demethylkotanin catabolic process The chemical reactions and pathways resulting in the breakdown of demethylkotanin. tmpzr1t_l9r_go_relaxed.owl demethylkotanin breakdown|demethylkotanin degradation|demethylkotanin catabolism di 2012-05-15T06:55:14Z biological_process owl:Class GO:1900357 biolink:NamedThing regulation of nigerotriose transport Any process that modulates the frequency, rate or extent of nigerotriose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T02:18:06Z biological_process owl:Class GO:0002394 biolink:NamedThing tolerance induction in gut-associated lymphoid tissue Tolerance induction taking place in the gut-associated lymphoid tissue (GALT). tmpzr1t_l9r_go_relaxed.owl tolerance induction in GALT|oral tolerance biological_process owl:Class GO:0046753 biolink:NamedThing non-lytic viral release The exit of a viral particle from a cell that does not involve cell lysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18852 biological_process owl:Class GO:0060924 biolink:NamedThing atrial cardiac muscle cell fate commitment The commitment of cells to atrial cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte cell fate commitment|atrial heart muscle cell fate commitment dph 2009-09-29T11:46:10Z biological_process owl:Class GO:0019250 biolink:NamedThing aerobic cobalamin biosynthetic process The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12) in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic cobalamin formation|vitamin B12 biosynthesis, aerobic|aerobic vitamin B12 biosynthetic process|vitamin B12 biosynthetic process, aerobic|aerobic cobalamin biosynthesis|cobalamin biosynthesis, aerobic|aerobic cobalamin anabolism|aerobic cobalamin synthesis|cobalamin biosynthetic process, aerobic|aerobic vitamin B12 biosynthesis MetaCyc:P381-PWY biological_process owl:Class GO:0033808 biolink:NamedThing 6'-deoxychalcone synthase activity Catalysis of the reaction: 3 malonyl-CoA + 4-coumaroyl-CoA + NADPH + H+ = 4 CoA + isoliquiritigenin + 3 CO2 + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:4-coumaroyl-CoA malonyltransferase (cyclizing, reducing) activity RHEA:10584|EC:2.3.1.170|MetaCyc:RXN-3142 molecular_function owl:Class GO:0060214 biolink:NamedThing endocardium formation Formation of the endocardium of the heart. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015898 biolink:NamedThing amiloride transport The directed movement amiloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Amiloride is a potent and specific inhibitor of sodium ion entry into cells. It is used as a potassium-sparing diuretic. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097338 biolink:NamedThing response to clozapine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a clozapine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:07:01Z biological_process owl:Class GO:0034425 biolink:NamedThing etioplast envelope The double lipid bilayer enclosing the etioplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033290 biolink:NamedThing eukaryotic 48S preinitiation complex A protein complex composed of the small ribosomal subunit, eIF3, eIF1A, methionyl-initiatior methionine and a capped mRNA. The complex is initially positioned at the 5'-end of the capped mRNA. tmpzr1t_l9r_go_relaxed.owl eukaryotic 48S initiation complex|eukaryotic 48S pre-initiation complex GO:0016283 cellular_component owl:Class GO:0102960 biolink:NamedThing momilactone-A synthase activity Catalysis of the reaction: 3beta-hydroxy-9beta-pimara-7,15-diene-19,6beta-olide + NAD(P) = momilactone A + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9290|RHEA:25367|EC:1.1.1.295 molecular_function owl:Class GO:0047191 biolink:NamedThing 1-alkylglycerophosphocholine O-acyltransferase activity Catalysis of the reaction: 1-alkyl-sn-glycero-3-phosphocholine + acyl-CoA = 1-alkyl-2-acyl-sn-glycero-3-phosphocholine + CoA. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine O-acyltransferase activity RHEA:23992|EC:2.3.1.63|MetaCyc:2.3.1.63-RXN molecular_function owl:Class GO:1901704 biolink:NamedThing L-glutamine biosynthetic process The chemical reactions and pathways resulting in the formation of L-glutamine. tmpzr1t_l9r_go_relaxed.owl L-glutamine biosynthesis|L-glutamine synthesis|L-glutamine anabolism|L-glutamine formation pde 2012-12-13T23:32:52Z biological_process owl:Class GO:0110064 biolink:NamedThing lncRNA catabolic process The chemical reactions and pathways resulting in the breakdown of lncRNAs, non-coding RNAs over 200 nucleotides in length. tmpzr1t_l9r_go_relaxed.owl lncRNA breakdown|lncRNA catabolism|lncRNA degradation kmv 2017-11-06T13:49:49Z biological_process owl:Class GO:0072588 biolink:NamedThing box H/ACA RNP complex A ribonucleoprotein complex that contains an RNA of the box H/ACA type and the four core proteins dyskerin, NOP10, NHP2, and GAR1 (human protein nomenclature). RNA pseudouridylation (isomerization of uridine to pseudouridine) is the major, and most likely the ancestral, function of H/ACA RNPs. Pseudouridylation targets include both large and small ribosomal RNAs (rRNAs), and small nuclear RNA (U2 snRNA). In addition to these catalytic H/ACA RNPs, a less abundant but more diverse class of structural H/ACA RNPs exists, which does not have pseudouridylation activity. These include the vertebrate telomerase RNP complex. tmpzr1t_l9r_go_relaxed.owl sRNP complex|box H/ACA snoRNP pseudouridylase complex https://github.com/geneontology/go-ontology/issues/20416 mah 2011-02-10T01:43:37Z cellular_component owl:Class GO:0120204 biolink:NamedThing methylcytosine to 5-glyceryl-methylcytosine dioxygenase activity Catalysis of the reaction: methylcytosine + L-ascorbate + O2 = 5-glyceryl-methylcytosine + glyoxylate + CO2. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-10T15:58:47Z molecular_function owl:Class GO:0070850 biolink:NamedThing TACC/TOG complex A protein complex that contains the transforming acidic coiled coil (TACC) protein and the TOG protein (Mia1p/Alp7p and Alp14, respectively, in fission yeast), and is involved in microtubule array remodeling as cells progress through the cell cycle. The TACC/TOG complex is conserved in eukaryotes, associates with microtubules, and shuttles between the nucleus and the cytoplasm during interphase. tmpzr1t_l9r_go_relaxed.owl mah 2009-08-05T03:06:08Z cellular_component owl:Class GO:0034512 biolink:NamedThing box C/D RNA binding Binding to a box C/D small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl box C/D sRNA binding|box C/D snoRNA binding https://github.com/geneontology/go-ontology/issues/20416 molecular_function owl:Class GO:0102248 biolink:NamedThing diacylglycerol transacylase activity Catalysis of the reaction: 2 a 1,2-diacyl-sn-glycerol = a triacyl-sn-glycerol + a 2-monoglyceride. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12383 molecular_function owl:Class GO:0004589 biolink:NamedThing orotate reductase (NADH) activity Catalysis of the reaction: (S)-dihydroorotate + NAD(+) = H(+) + NADH + orotate. tmpzr1t_l9r_go_relaxed.owl (S)-dihydroorotate:NAD+ oxidoreductase activity KEGG_REACTION:R01869|MetaCyc:OROTATE-REDUCTASE-NADH-RXN|EC:1.3.1.14|RHEA:13513 molecular_function owl:Class GO:0039576 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of JAK1 activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of a JAK-STAT signal cascade in a host organism by reducing the activity of host JAK1 (Janus Kinase 1). tmpzr1t_l9r_go_relaxed.owl suppression by virus of host janus kinase 1 activity|inhibition of host JAK activity by virus|suppression by virus of tyrosine phosphorylation of host STAT protein|negative regulation by virus of tyrosine phosphorylation of host STAT protein|negative regulation by virus of host JAK|viral inhibition of tyrosine phosphorylation of host STAT protein|suppression by virus of host JAK1 activity https://github.com/geneontology/go-ontology/issues/21963 VZ:784 bf GO:0039515 biological_process owl:Class GO:0045793 biolink:NamedThing positive regulation of cell size Any process that increases cell size. tmpzr1t_l9r_go_relaxed.owl up-regulation of cell size|up regulation of cell size|activation of cell size|upregulation of cell size|stimulation of cell size biological_process owl:Class GO:0052801 biolink:NamedThing bicyclic nitroimidazole metabolic process The chemical reactions and pathways involving bicyclic nitroimidazoles, imidazole derivatives with two rings and a nitro group attached to one ring. tmpzr1t_l9r_go_relaxed.owl bicyclic nitroimidazole metabolism biological_process owl:Class GO:0055054 biolink:NamedThing fructose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fructose + H+ = fructose + H+. tmpzr1t_l9r_go_relaxed.owl fructose:hydrogen symporter activity molecular_function owl:Class GO:0010426 biolink:NamedThing DNA methylation on cytosine within a CHH sequence The covalent transfer of a methyl group, to C-5 or N-4, of a cytosine located within an asymmetric CHH sequence in a DNA molecule. H stands for an adenine, cytosine, or thymine nucleotide. tmpzr1t_l9r_go_relaxed.owl cytosine methylation within a CHH sequence|DNA methylation on cytosine within a CNN sequence|cytosine methylation within a CNN sequence biological_process owl:Class GO:0050108 biolink:NamedThing monoterpenyl-diphosphatase activity Catalysis of the reaction: monoterpenyl diphosphate + H2O = monoterpenol + diphosphate. tmpzr1t_l9r_go_relaxed.owl monoterpenyl-pyrophosphatase activity|bornyl diphosphate hydrolase activity|bornyl pyrophosphate hydrolase activity|monoterpenyl-diphosphate diphosphohydrolase activity EC:3.1.7.3|MetaCyc:MONOTERPENYL-PYROPHOSPHATASE-RXN molecular_function owl:Class GO:1902056 biolink:NamedThing (25S)-Delta(7)-dafachronate metabolic process The chemical reactions and pathways involving (25S)-Delta(7)-dafachronate. tmpzr1t_l9r_go_relaxed.owl (25S)-Delta(7)-dafachronate metabolism ab 2013-04-13T09:05:27Z biological_process owl:Class GO:0047449 biolink:NamedThing 2-dehydro-3-deoxy-L-arabinonate dehydratase activity Catalysis of the reaction: 2-dehydro-3-deoxy-L-arabinonate = 2,5-dioxopentanoate + H(2)O. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-L-arabinonate hydro-lyase (2,5-dioxopentanoate-forming)|2-keto-3-deoxy-L-arabinonate dehydratase activity|2-dehydro-3-deoxy-L-arabinonate hydro-lyase activity EC:4.2.1.43|RHEA:17201|KEGG_REACTION:R02278|MetaCyc:4.2.1.43-RXN molecular_function owl:Class GO:0009401 biolink:NamedThing phosphoenolpyruvate-dependent sugar phosphotransferase system The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC. tmpzr1t_l9r_go_relaxed.owl PTS system biological_process owl:Class GO:0052818 biolink:NamedThing heteroglycan 3-alpha-mannosyltransferase activity Catalysis of the reaction: heteroglycan + GDP-mannose = (1->3)-alpha-D-mannosylheteroglycan + GDP. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphomannose-heteroglycan 3-alpha-mannosyltransferase activity|heteropolysaccharide 3-alpha-mannosyltransferase activity|GDP mannose 3-alpha-mannosyltransferase activity|GDP-mannose:heteroglycan 3-alpha-D-mannosyltransferase activity MetaCyc:RXN-7992|EC:2.4.1.48|KEGG_REACTION:R03769 ai 2011-10-27T12:36:10Z molecular_function owl:Class GO:1904952 biolink:NamedThing hydroxycinnamic acid transport The directed movement of a hydroxycinnamic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl lr 2016-02-05T22:00:38Z biological_process owl:Class GO:0050110 biolink:NamedThing mucinaminylserine mucinaminidase activity Catalysis of the reaction: D-galactosyl-3-(N-acetyl-beta-D-galactosaminyl)-L-serine + H2O = D-galactosyl-3-N-acetyl-beta-D-galactosamine + L-serine. tmpzr1t_l9r_go_relaxed.owl endo-beta-N-acetylgalactosaminidase|endo-beta-N-acetyl-D-galactosaminidase activity|D-galactosyl-3-(N-acetyl-beta-D-galactosaminyl)-L-serine mucinaminohydrolase activity EC:3.2.1.97|MetaCyc:3.2.1.110-RXN|KEGG_REACTION:R04527 molecular_function owl:Class GO:0006174 biolink:NamedThing dADP phosphorylation The process of introducing a phosphate group into dADP, deoxyadenosine diphosphate, to produce dATP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018748 biolink:NamedThing iprodione amidohydrolase activity Catalysis of the reaction: iprodione + OH- = 3,5-dichlorophenylcarboximide + N-isopropylcarbamate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0706 molecular_function owl:Class GO:0018948 biolink:NamedThing xylene metabolic process The chemical reactions and pathways involving xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene. tmpzr1t_l9r_go_relaxed.owl xylene metabolism biological_process owl:Class GO:0071196 biolink:NamedThing Kv4.3-KChIP1 channel complex A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.3. tmpzr1t_l9r_go_relaxed.owl CORUM:3091 mah 2009-11-23T04:59:38Z cellular_component owl:Class GO:0150137 biolink:NamedThing interleukin-37 production The appearance of interleukin-37 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-37 biosynthetic process bc 2019-12-08T08:43:09Z biological_process owl:Class GO:0014845 biolink:NamedThing stomach body smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the body of stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007387 biolink:NamedThing anterior compartment pattern formation The process giving rise to specification of cell identity in the anterior compartments of the segmented embryo. tmpzr1t_l9r_go_relaxed.owl anterior compartment pattern specification biological_process owl:Class GO:0034527 biolink:NamedThing 1,2-dihydroxy-8-carboxynaphthalene dioxygenase activity Catalysis of the reaction: 1,2-dihydroxy-8-carboxynaphthalene + O2 = 2-carboxy-2-hydroxy-8-carboxychromene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0790 molecular_function owl:Class GO:1990300 biolink:NamedThing cellulosome binding Binding to a cellulosome, an extracellular multi-enzyme complex containing several enzymes aligned on a non-catalytic scaffolding that functions to hydrolyze plant cell wall polysaccharides. tmpzr1t_l9r_go_relaxed.owl scaffoldin complex binding 2014-02-26T22:41:22Z GO:1990301 molecular_function owl:Class GO:0048867 biolink:NamedThing stem cell fate determination The process in which a cell becomes capable of differentiating autonomously into a stem cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102756 biolink:NamedThing very-long-chain 3-ketoacyl-CoA synthase activity Catalysis of the reaction: malonyl-CoA + a very-long-chain 2,3,4-saturated fatty acyl CoA = carbon dioxide + coenzyme A + a very-long-chain oxoacyl-CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:32727|MetaCyc:RXN-7697|EC:2.3.1.199 molecular_function owl:Class GO:0005005 biolink:NamedThing transmembrane-ephrin receptor activity Combining with a transmembrane ephrin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl transmembrane-Eph receptor activity molecular_function owl:Class GO:0060207 biolink:NamedThing diestrus The estrous cycle phase which is a period of sexual quiescence and represents the phase of the mature corpus luteum. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0001010 biolink:NamedThing RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity The function of binding to a specific DNA sequence and recruiting another transcription factor to the DNA in order to modulate transcription. The recruited factor may bind DNA directly, or may be colocalized via protein-protein interactions. tmpzr1t_l9r_go_relaxed.owl sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription factor activity, sequence-specific DNA-binding transcription factor recruiting|transcription factor activity, sequence-specific DNA binding transcription factor recruiting krc 2010-08-18T06:46:33Z molecular_function owl:Class GO:0018556 biolink:NamedThing 2,2',3-trihydroxybiphenyl dioxygenase activity Catalysis of the reaction: 2,3-dihydroxybenzenoid + O2 = H+ + distal extradiol ring cleavage. Substrates are 2,2',3-trihydroxybiphenyl (forms 2-hydroxy-6-oxo-6-(2-hydroxyphenyl)-hexa-2,4-dienoate) and 2,2',3-trihydroxydiphenylether (forms 2,3-hydroxy-6-oxo-6-(2-hydroxyphenyl)-hexa-2,4-dienoate). tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0032|EC:1.13.11.- molecular_function owl:Class GO:0097589 biolink:NamedThing archaeal-type flagellum A non-membrane-bounded organelle superficially similar to a bacterial-type flagellum; they both consist of filaments extending outside the cell, and rotate to propel the cell, but the archaeal flagella (also called archaella) have a unique structure which lacks a central channel. Similar to bacterial type IV pilins, the archaeal flagellins (archaellins) are made with class 3 signal peptides and they are processed by a type IV prepilin peptidase-like enzyme. The archaellins are typically modified by the addition of N-linked glycans which are necessary for proper assembly and/or function. tmpzr1t_l9r_go_relaxed.owl archaeal flagellum|archaellum|archaella pr 2014-03-25T20:36:24Z cellular_component owl:Class GO:0010402 biolink:NamedThing pectic arabinan metabolic process The chemical reactions and pathways involving pectic arabinan, a polymer with an alpha-(1->5)-linked L-arabinofuranose (Araf) backbone that can be substituted with Araf-alpha-(1->2)-, Araf-alpha-(1->3)-, and/or Araf-alpha-(1->3)-Araf-alpha-(1->3)-side chains. Arabinan can be found as a side chain of the pectin rhamnogalacturonan I. tmpzr1t_l9r_go_relaxed.owl pectic arabinan metabolism biological_process owl:Class GO:0060469 biolink:NamedThing positive regulation of transcription involved in egg activation Any process that increases the rate, frequency or extent of transcription as a part of the process of egg activation. tmpzr1t_l9r_go_relaxed.owl activation of the maternal genome|activation of the egg genome biological_process owl:Class GO:0010047 biolink:NamedThing fruit dehiscence The process leading to the spontaneous opening of the fruit permitting the escape of seeds. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140490 biolink:NamedThing microtubule nucleator activity The action of a molecule that provides a shape mimicking the end of a microtubule to seed the formation of a new microtubule via self-assembly. tmpzr1t_l9r_go_relaxed.owl microtubule nucleation template activity https://github.com/geneontology/go-ontology/issues/19709 pg 2020-07-01T08:47:54Z molecular_function owl:Class GO:0047645 biolink:NamedThing alkan-1-ol dehydrogenase (acceptor) activity Catalysis of the reaction: primary alcohol + acceptor = aldehyde + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl alkan-1-ol:acceptor oxidoreductase activity|alkan-1-ol:(acceptor) oxidoreductase activity|polyethylene glycol dehydrogenase activity MetaCyc:ALKAN-1-OL-DEHYDROGENASE-ACCEPTOR-RXN|EC:1.1.99.20|RHEA:14685 molecular_function owl:Class GO:0140381 biolink:NamedThing 4-hydroxytryptamine 4-phosphate methyltransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine (SAM) + 4-hydroxytryptamine 4-phosphate (norbaeocystin) <=> 2 S-adenosyl-L-homocysteine + psilocybin. tmpzr1t_l9r_go_relaxed.owl psilocybin synthase|norbaeocystin methyltransferase EC:2.1.1.345|RHEA:55568 pg 2019-11-20T10:16:28Z molecular_function owl:Class GO:0051571 biolink:NamedThing positive regulation of histone H3-K4 methylation Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone H3-K4 methylation|stimulation of histone H3-K4 methylation|upregulation of histone H3-K4 methylation|activation of histone H3-K4 methylation|up regulation of histone H3-K4 methylation biological_process owl:Class GO:0033225 biolink:NamedThing ATPase-coupled 2-aminoethylphosphonate transporter activity Enables the directed movement of 2-aminoethylphosphonate from one side of a membrane to the other by catalysis of the reaction: ATP + H2O + 2-aminoethylphosphonate(out) = ADP + phosphate + 2-aminoethylphosphonate(in). tmpzr1t_l9r_go_relaxed.owl ciliatine transporter activity|2-phosphonoethylamine transporting ATPase activity|2-aminoethylphosphonate-transporting ATPase activity|2-phosphonoethylamine transmembrane transporter activity|ATP-dependent 2-aminoethylphosphonate transporter activity|2-aminoethylphosphonate transmembrane transporter activity|2-aminoethylphosphonate transporting ATPase activity|ciliatine transportingATPase activity RHEA:32775 There is no annotated example of this MF; therefore we cannot classify it more precisely. GO:0033224 molecular_function owl:Class GO:1905703 biolink:NamedThing negative regulation of inhibitory synapse assembly Any process that stops, prevents or reduces the frequency, rate or extent of inhibitory synapse assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of inhibitory synapse formation|inhibition of inhibitory synapse assembly|downregulation of inhibitory synapse assembly|negative regulation of inhibitory synapse formation|inhibition of inhibitory synapse formation|down regulation of inhibitory synapse assembly|down-regulation of inhibitory synapse formation|downregulation of inhibitory synapse formation|down-regulation of inhibitory synapse assembly tb 2016-11-16T18:55:40Z biological_process owl:Class GO:0070463 biolink:NamedThing tubulin-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of a tubulin dimer to accelerate release of ADP and phosphate. tmpzr1t_l9r_go_relaxed.owl tubulin-activated ATPase activity molecular_function owl:Class GO:0075530 biolink:NamedThing establishment of latency as a linear episome A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as linear structure. tmpzr1t_l9r_go_relaxed.owl establishment of linear plasmid latency|establishment of latency as a linear plasmid jl 2011-08-04T03:14:23Z biological_process owl:Class GO:0047786 biolink:NamedThing cortisone alpha-reductase activity Catalysis of the reaction: 4,5alpha-dihydrocortisone + NADP(+) = cortisone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl microsomal steroid reductase (5alpha)|delta4-3-ketosteroid reductase (5alpha)|delta4-5alpha-reductase activity|4,5alpha-dihydrocortisone:NADP+ delta4-oxidoreductase activity|delta4-3-oxosteroid-5alpha-reductase|cortisone a-reductase activity|NADPH:Delta4-3-oxosteroid-5alpha-oxidoreductase activity|cortisone delta4-5alpha-reductase activity KEGG_REACTION:R02892|RHEA:17981|MetaCyc:CORTISONE-ALPHA-REDUCTASE-RXN molecular_function owl:Class GO:0011000 biolink:NamedThing replication fork arrest at mating type locus A process that impedes the progress of the DNA replication fork at natural replication fork pausing sites within the mating type locus. tmpzr1t_l9r_go_relaxed.owl tb 2009-06-24T12:02:48Z biological_process owl:Class GO:0046331 biolink:NamedThing lateral inhibition Signaling between cells of equivalent developmental potential that results in these cells adopting different developmental fates. An example is the suppression by cells with a particular fate of the adoption of the same fate by surrounding cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086053 biolink:NamedThing AV node cell to bundle of His cell communication by electrical coupling The process that mediates signaling interactions between an AV node cardiomyocyte and a bundle of His cardiac muscle cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl atrioventricular node cell to bundle of His cell communication by electrical coupling dph 2011-11-16T12:31:08Z biological_process owl:Class GO:0051896 biolink:NamedThing regulation of protein kinase B signaling Any process that modulates the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B. tmpzr1t_l9r_go_relaxed.owl regulation of AKT signaling cascade|regulation of PKB signaling cascade|regulation of protein kinase B signaling cascade|regulation of PKB signalling cascade|regulation of AKT signalling cascade|regulation of protein kinase B signalling cascade biological_process owl:Class GO:1990463 biolink:NamedThing lateral cortical node A protein complex that is anchored at the cortical face of the plasma membrane, and contains proteins involved in regulating cell cycle progression. In Schizosaccharomyces pombe, lateral cortical nodes are several megadaltons in size, and contain Slf1, which anchors the complex at the membrane, and the methyltransferase Skb1 in stoichiometric quantities, and may contain other proteins. tmpzr1t_l9r_go_relaxed.owl Skb1-containing cortical node pr 2014-08-20T09:04:45Z cellular_component owl:Class GO:0047524 biolink:NamedThing 16-hydroxysteroid epimerase activity Catalysis of the reaction: 16-alpha-hydroxysteroid = 16-beta-hydroxysteroid. tmpzr1t_l9r_go_relaxed.owl 16-hydroxysteroid 16-epimerase activity RHEA:15829|MetaCyc:16-HYDROXYSTEROID-EPIMERASE-RXN|EC:5.1.99.2 molecular_function owl:Class GO:1902346 biolink:NamedThing meiotic strand displacement involved in double-strand break repair via SDSA Any meiotic strand displacement that is involved in double-strand break repair via synthesis-dependent strand annealing (SDSA). tmpzr1t_l9r_go_relaxed.owl meiotic strand displacement involved in SDSA|meiotic D-loop dissociation involved in mitotic gene conversion|meiotic displacement loop processing involved in mitotic gene conversion|meiotic strand displacement involved in mitotic gene conversion|meiotic displacement loop processing involved in double-strand break repair via synthesis-dependent strand annealing|meiotic displacement loop dissociation involved in mitotic gene conversion|meiotic displacement loop dissociation involved in double-strand break repair via synthesis-dependent strand annealing|meiotic D-loop processing involved in mitotic gene conversion|meiotic strand displacement involved in double-strand break repair via synthesis-dependent strand annealing|meiotic D-loop processing involved in double-strand break repair via synthesis-dependent strand annealing|meiotic D-loop dissociation involved in double-strand break repair via synthesis-dependent strand annealing pr 2013-08-07T12:56:20Z biological_process owl:Class GO:0000714 biolink:NamedThing meiotic strand displacement The cell cycle process in which the broken 3' single-strand DNA molecule that formed heteroduplex DNA with its complement in an intact duplex DNA is rejected. The Watson-Crick base pairing in the original duplex is restored. The rejected 3' single-strand DNA molecule reanneals with its original complement to reform two intact duplex molecules. This occurs during meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic displacement loop processing|meiotic D-loop dissociation|meiotic D-loop processing|meiotic displacement loop dissociation biological_process owl:Class GO:0050531 biolink:NamedThing mannosyl-3-phosphoglycerate phosphatase activity Catalysis of the reaction: 2-(alpha-D-mannosyl)-3-phosphoglycerate + H(2)O = 2-(alpha-D-mannosyl)-D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl alpha-D-mannosyl-3-phosphoglycerate phosphohydrolase activity RHEA:19309|EC:3.1.3.70|MetaCyc:3.1.3.70-RXN|KEGG_REACTION:R05790 molecular_function owl:Class GO:0106330 biolink:NamedThing sialate 9-O-acetylesterase activity Catalysis of the reaction: H2O + N-acetyl-9-O-acetylneuraminate = acetate + H(+) + N-acetylneuraminate. tmpzr1t_l9r_go_relaxed.owl RHEA:22600|EC:3.1.1.53 hjd 2020-09-30T19:38:44Z molecular_function owl:Class GO:0010690 biolink:NamedThing negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to stress Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a disturbance in organismal or cellular homeostasis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046100 biolink:NamedThing hypoxanthine metabolic process The chemical reactions and pathways involving hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate. tmpzr1t_l9r_go_relaxed.owl hypoxanthine metabolism biological_process owl:Class GO:0004836 biolink:NamedThing tyramine-beta hydroxylase activity Catalysis of the hydroxylation of tyramine to form octopamine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005516 biolink:NamedThing calmodulin binding Binding to calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052748 biolink:NamedThing baicalin beta-D-glucuronidase activity Catalysis of the reaction: baicalin + H2O = baicalein + D-glucuronate. tmpzr1t_l9r_go_relaxed.owl 5,6,7-trihydroxyflavone-7-O-beta-D-glucupyranosiduronate glucuronosylhydrolase activity|baicalinase activity KEGG_REACTION:R09533|EC:3.2.1.167|MetaCyc:RXN-11760|RHEA:28130 ai 2011-09-21T12:58:43Z molecular_function owl:Class GO:0035096 biolink:NamedThing larval midgut cell programmed cell death The stage-specific programmed cell death of cells of the larval midgut, during histolysis of the larval organ. tmpzr1t_l9r_go_relaxed.owl larval midgut cell death|programmed cell death of larval midgut cells biological_process owl:Class GO:0036530 biolink:NamedThing protein deglycation, methylglyoxal removal The removal of methylglyoxal from a glycated protein, to form lactate and a deglycated protein. tmpzr1t_l9r_go_relaxed.owl protein deglycation of methylglyoxal-glycated protein bf 2016-08-04T10:42:26Z biological_process owl:Class GO:0019635 biolink:NamedThing 2-aminoethylphosphonate catabolic process The chemical reactions and pathways resulting in the breakdown of 2-aminoethylphosphonate, also known as ciliatine. tmpzr1t_l9r_go_relaxed.owl ciliatine catabolic process|ciliatine catabolism|2-aminoethylphosphonate degradation|2-aminoethylphosphonate catabolism|2-phosphonoethylamine catabolism|2-phosphonoethylamine catabolic process|2-aminoethylphosphonate breakdown MetaCyc:PHOSPHONOTASE-PWY biological_process owl:Class GO:0060805 biolink:NamedThing negative regulation of trophoblast cell differentiation by transcription regulation from RNA polymerase II promoter Any process that modulates the rate, frequency or extent of transcription from an RNA polymerase II promoter ultimately resulting in a decrease in trophoblast stem cells differentiating into the more mature cells of the trophoblast. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-06T01:58:25Z biological_process owl:Class GO:0015571 biolink:NamedThing N-acetylgalactosamine transmembrane transporter activity Enables the transfer of N-acetylgalactosamine from one side of a membrane to the other. N-acetylgalactosamine, 2-acetamido-2-deoxygalactopyranose, is the n-acetyl derivative of galactosamine. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine permease activity GO:0015590 molecular_function owl:Class GO:0032532 biolink:NamedThing regulation of microvillus length A process that modulates the length of a microvillus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043529 biolink:NamedThing GET complex An endoplasmic reticulum protein-containing complex that is conserved in eukaryotics and that mediates the insertion of tail-anchored proteins into the ER membrane. In yeast, includes Get1p, Get2p and Get3p proteins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20244 cellular_component owl:Class GO:0050985 biolink:NamedThing peptidyl-threonine sulfation The sulfation of peptidyl-threonine to form peptidyl-O-sulfo-L-threonine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0362 biological_process owl:Class GO:1905773 biolink:NamedThing 8-hydroxy-2'-deoxyguanosine DNA binding Binding to 8-hydroxy-2'-deoxyguanosine an oxidized purine residue found in damaged DNA. tmpzr1t_l9r_go_relaxed.owl nc 2016-12-21T15:57:27Z molecular_function owl:Class GO:0120225 biolink:NamedThing coenzyme A binding Binding to coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. tmpzr1t_l9r_go_relaxed.owl CoA binding krc 2020-05-06T18:22:56Z molecular_function owl:Class GO:0032033 biolink:NamedThing myosin II light chain binding Binding to a light chain of a myosin II complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0017054 biolink:NamedThing negative cofactor 2 complex A heterodimeric protein complex that can stably associate with TATA-binding protein on promoters, thereby preventing the assembly of transcription factors TFIIA and TFIIB and leading to repression of RNA polymerase II transcription. The two subunits, NC2alpha (Drap1) and NC2beta (Dr1), dimerize through histone fold domains of the H2A/H2B type present in the amino termini. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019256 biolink:NamedThing acrylonitrile catabolic process The chemical reactions and pathways resulting in the breakdown of acrylonitrile, a colorless, volatile liquid with a pungent odor. Acrylonitrile is used in the production of acrylic fibers, plastics, and synthetic rubbers. tmpzr1t_l9r_go_relaxed.owl acrylonitrile breakdown|acrylonitrile degradation|acrylonitrile catabolism MetaCyc:P344-PWY biological_process owl:Class GO:0061409 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to freezing Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a freezing stimulus, temperatures below 0 degrees Celsius. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T12:11:06Z biological_process owl:Class GO:0046423 biolink:NamedThing allene-oxide cyclase activity Catalysis of the reaction: (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoate = (15Z)-12-oxophyto-10,15-dienoate. tmpzr1t_l9r_go_relaxed.owl (9Z)-(13S)-12,13-epoxyoctadeca-9,11,15-trienoate isomerase (cyclizing) RHEA:22592|MetaCyc:ALLENE-OXIDE-CYCLASE-RXN|KEGG_REACTION:R03402|EC:5.3.99.6 molecular_function owl:Class GO:0102625 biolink:NamedThing cirsimaritin 4'-O-methyltransferase activity Catalysis of the reaction: cirsimaritin + S-adenosyl-L-methionine <=> salvigenin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15530 molecular_function owl:Class GO:1990310 biolink:NamedThing type-III dockerin domain binding Binding to a type-III dockerin domain of a protein. Type-III dockerin domain is the binding partner of type-III cohesin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T03:22:36Z molecular_function owl:Class GO:0008116 biolink:NamedThing prostaglandin-I synthase activity Catalysis of the reaction: prostaglandin H(2) = prostaglandin I(2). tmpzr1t_l9r_go_relaxed.owl PGI2 synthase activity|PGI(2) synthetase activity|PGI(2) synthase activity|prostacyclin synthase activity|PGI2 synthetase activity|prostacycline synthetase activity|(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate 6-isomerase activity|prostagladin I2 synthetase activity|cytochrome P450 CYP8A1 EC:5.3.99.4|RHEA:23580|KEGG_REACTION:R02267|Reactome:R-HSA-76496|MetaCyc:PROSTAGLANDIN-I-SYNTHASE-RXN molecular_function owl:Class GO:0047824 biolink:NamedThing D-iditol 2-dehydrogenase activity Catalysis of the reaction: D-iditol + NAD+ = D-sorbose + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:12725|MetaCyc:D-IDITOL-2-DEHYDROGENASE-RXN|EC:1.1.1.15 molecular_function owl:Class GO:0090660 biolink:NamedThing cerebrospinal fluid circulation The neurological system process driven by motile cilia on ependymal cells of the brain by which cerebrospinal fluid circulates from the sites of secretion to the sites of absorption. In ventricular cavities, the flow is unidirectional and rostrocaudal, in subarachnoid spaces, the flow is multi-directional. tmpzr1t_l9r_go_relaxed.owl CSF circulation|cerebrospinal fluid flow|CSF flow tb 2015-09-11T15:49:59Z biological_process owl:Class GO:0140212 biolink:NamedThing regulation of long-chain fatty acid import into cell Any process that modulates the frequency, rate or extent of long-chain fatty acid import into a cell. tmpzr1t_l9r_go_relaxed.owl pg 2018-04-10T15:10:41Z biological_process owl:Class GO:2001081 biolink:NamedThing (1->4)-beta-D-galactan binding Binding to (1->4)-beta-D-galactan. tmpzr1t_l9r_go_relaxed.owl (1,4)-beta-D-galactan binding jl 2011-09-15T01:21:50Z molecular_function owl:Class GO:0071529 biolink:NamedThing cementum mineralization The process in which calcium salts, mainly carbonated hydroxyapatite, are deposited into the initial acellular cementum. tmpzr1t_l9r_go_relaxed.owl cementum formation mah 2010-01-07T04:18:54Z biological_process owl:Class GO:0021619 biolink:NamedThing hypoglossal nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the hypoglossal nerve to attain its fully functional state. This motor nerve innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. tmpzr1t_l9r_go_relaxed.owl CN XII maturation biological_process owl:Class GO:0102829 biolink:NamedThing ajugose synthase activity Catalysis of the reaction: 2 verbascose <=> ajugose + stachyose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8285 molecular_function owl:Class GO:0052579 biolink:NamedThing (+)-pulegone reductase, (+)-isomenthone as substrate, activity Catalysis of the reaction: (+)-isomenthone + NADP+ = (+)-pulegone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl (+)-isomenthone:NADP+ oxidoreductase activity MetaCyc:RXN-5164|EC:1.3.1.81 ai 2010-08-09T04:28:00Z molecular_function owl:Class GO:0097156 biolink:NamedThing fasciculation of motor neuron axon The collection of motor neuron axons into a bundle of rods, known as a fascicle. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-16T09:20:46Z biological_process owl:Class GO:0097372 biolink:NamedThing NAD-dependent histone deacetylase activity (H3-K18 specific) Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 18) + H2O = histone H3 L-lysine (position 18) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 18 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl pr 2012-09-05T13:16:39Z molecular_function owl:Class GO:0052545 biolink:NamedThing callose localization Any process in which callose is transported to, and/or maintained in, a specific location. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. tmpzr1t_l9r_go_relaxed.owl callose localisation biological_process owl:Class GO:0102972 biolink:NamedThing gibberellin A12,2-oxoglutarate:oxygen oxidoreductase activity (gibberellin A110-forming) Catalysis of the reaction: gibberellin A12 + 2-oxoglutarate + O2 = gibberellin A110 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-947 molecular_function owl:Class GO:0000113 biolink:NamedThing nucleotide-excision repair factor 4 complex One of several protein complexes involved in nucleotide-excision repair; possesses DNA damage recognition and DNA-dependent ATPase activities. In S. cerevisiae, it is composed of Rad7p and Rad16p. tmpzr1t_l9r_go_relaxed.owl NEF4 complex Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0102466 biolink:NamedThing beta-carotene 2,2'-beta-hydroxylase activity Catalysis of the reaction: beta-carotene + 2 NADH + 2 H+ + 2 O2 = (2R,2'R)-dihydroxy-all-trans-beta-carotene + 2 NAD + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14019 molecular_function owl:Class GO:0070110 biolink:NamedThing ciliary neurotrophic factor receptor complex A protein complex that acts as a receptor for the cytokine ciliary neurotrophic factor (CNTF). In humans the receptor complex is a hexamer composed of two molecules each of CNTF and CNTFR and one molecule each of gp130 and LIFR. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019331 biolink:NamedThing anaerobic respiration, using ammonium as electron donor The oxidation of ammonium (NH4) to nitrogen (N2) in the absence of oxygen, using nitrite (NO2) as the electron acceptor. It is suggested that hydroxylamine and ammonium are combined to yield hydrazine, which is subsequently oxidized to N2. tmpzr1t_l9r_go_relaxed.owl anammox|anaerobic ammonium oxidation Wikipedia:Anammox|MetaCyc:P303-PWY biological_process owl:Class GO:0102536 biolink:NamedThing sakuranetin 6-hydroxylase activity Catalysis of the reaction: sakuranetin + O2 + NADPH + H+ <=> carthamidin-7-methyl ether + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14754 molecular_function owl:Class GO:0050343 biolink:NamedThing trans-2-enoyl-CoA reductase (NAD+) activity Catalysis of the reaction: acyl-CoA + NAD+ = trans-didehydroacyl-CoA + NADH. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:NAD+ trans-2-oxidoreductase activity EC:1.3.1.44|MetaCyc:TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN|RHEA:18177 molecular_function owl:Class GO:0043338 biolink:NamedThing CTP:2,3-di-O-geranylgeranyl-sn-glycero-1-phosphate cytidyltransferase activity Catalysis of the reaction: CTP + 2,3-di-O-geranylgeranyl-sn-glycero-1-phosphate = CDP-2,3-di-O-geranylgeranyl-sn-glycerol. tmpzr1t_l9r_go_relaxed.owl CDP-2,3-di-O-geranylgeranyl-sn-glycerol synthase EC:2.7.7.67|RHEA:25690 molecular_function owl:Class GO:0000937 biolink:NamedThing dolipore septum A septum, or cross-wall, between two portions of a cell or hypha; contains a central pore around which the septum is swollen to form a barrel-shaped structure; pore is covered on each side of the septum by a septal pore cap (parenthosome). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033937 biolink:NamedThing 3-deoxy-2-octulosonidase activity Catalysis of the endohydrolysis of the beta-ketopyranosidic linkages of 3-deoxy-D-manno-2-octulosonate in capsular polysaccharides. tmpzr1t_l9r_go_relaxed.owl octulosylono hydrolase activity|octulofuranosylono hydrolase activity|2-keto-3-deoxyoctonate hydrolase activity|capsular-polysaccharide 3-deoxy-D-manno-2-octulosonohydrolase activity|octulopyranosylonohydrolase activity EC:3.2.1.124|MetaCyc:3.2.1.124-RXN molecular_function owl:Class GO:0035334 biolink:NamedThing Notch receptor processing, ligand-independent The proteolytic cleavages to the Notch protein that occur prior to ligand binding. A primary cleavage event within the extracellular domain whilst the Notch protein in still in the secretory pathway, leads to the transportation of a processed heterodimer to the cell surface. tmpzr1t_l9r_go_relaxed.owl Notch S1 cleavage bf 2010-02-26T02:32:46Z biological_process owl:Class GO:0032014 biolink:NamedThing positive regulation of ARF protein signal transduction Any process that activates or increases the frequency, rate or extent of ARF protein signal transduction. tmpzr1t_l9r_go_relaxed.owl up-regulation of ARF protein signal transduction|activation of ARF protein signal transduction|up regulation of ARF protein signal transduction|stimulation of ARF protein signal transduction|upregulation of ARF protein signal transduction biological_process owl:Class GO:0097611 biolink:NamedThing dinoflagellate cingulum A cell surface furrow that wraps around a dinoflagellate cell; the transverse flagellum lies in it. tmpzr1t_l9r_go_relaxed.owl girdle|cingulum|transverse groove The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2014-06-09T11:28:22Z cellular_component owl:Class GO:0062061 biolink:NamedThing TAP complex binding Binding to a TAP complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T13:54:22Z molecular_function owl:Class GO:0070311 biolink:NamedThing nucleosomal methylation activator complex A protein complex that contains eight subunits in common with the SWI/SNF complex, plus the ATPase BRG1 (SMARCA4) and the histone methyltransferase CARM1; the complex is involved in regulating nuclear receptor-dependent transcription. tmpzr1t_l9r_go_relaxed.owl NUMAC cellular_component owl:Class GO:0106319 biolink:NamedThing (R)-limonene 1,2-monooxygenase NADH activity Catalysis of the reaction: (4R)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4R)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.107|RHEA:26093 hjd 2020-09-23T15:20:27Z molecular_function owl:Class GO:0098892 biolink:NamedThing extrinsic component of postsynaptic specialization membrane The component of the postsynaptic specialization membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061793 biolink:NamedThing chromatin lock complex A chromatin silencing complex that binds and bridges separate nucleosomal histones resulting in heterochromatin assembly and chromatin looping. tmpzr1t_l9r_go_relaxed.owl nucleosome bridging complex dph 2016-09-09T13:47:27Z cellular_component owl:Class GO:0000246 biolink:NamedThing delta24(24-1) sterol reductase activity Catalysis of the reaction: ergosterol + NADP(+) = ergosta-5,7,22,24(24(1))-tetraen-3beta-ol + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl sterol delta24(28)-methylene reductase activity|C-24(28) sterol reductase activity|D24(24-1)-sterol reductase activity|sterol delta-24(28) methylene reductase activity|sterol Delta(24(28))-reductase activity|sterol delta-24(28) reductase activity|ergosterol:NADP+ delta24(241)-oxidoreductase activity|sterol delta24(28)-reductase activity|delta24(241)-sterol reductase activity|sterol Delta(24(28))-methylene reductase activity MetaCyc:1.3.1.71-RXN|KEGG_REACTION:R05641|RHEA:18501|EC:1.3.1.71 molecular_function owl:Class GO:0080172 biolink:NamedThing petal epidermis patterning The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the cells in the petal epidermis. tmpzr1t_l9r_go_relaxed.owl dhl 2011-04-25T04:44:06Z biological_process owl:Class GO:0030908 biolink:NamedThing protein splicing The post-translational removal of peptide sequences from within a protein sequence. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Protein_splicing biological_process owl:Class GO:0031889 biolink:NamedThing urotensin receptor binding Binding to a urotensin receptor. tmpzr1t_l9r_go_relaxed.owl urotensin receptor ligand molecular_function owl:Class GO:0016314 biolink:NamedThing phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity Catalysis of the reaction: phosphatidylinositol-3,4,5-trisphosphate + H2O = phosphatidylinositol-4,5-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl PtdIns(3,4,5)P3 3-phosphatase activity|1-phosphatidyl-1D-myo-inositol-3,4,5-trisphosphate 3-phosphohydrolase activity|PI(3,4,5)P3 3-phosphatase activity|PI(3)P 3-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphohydrolase activity|MMAC1 Reactome:R-HSA-2317387|RHEA:25017|EC:3.1.3.67|Reactome:R-HSA-199456|MetaCyc:3.1.3.67-RXN|Reactome:R-HSA-202237 molecular_function owl:Class GO:0044686 biolink:NamedThing cysteate synthase activity Catalysis of the reaction: L-phosphoserine + SO32- = L-cysteate + HPO4-. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.76|MetaCyc:RXN-11108|RHEA:26486 jl 2012-08-15T14:16:05Z molecular_function owl:Class GO:1900777 biolink:NamedThing fumiquinazoline A catabolic process The chemical reactions and pathways resulting in the breakdown of fumiquinazoline A. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline A degradation|fumiquinazoline A breakdown|fumiquinazoline A catabolism di 2012-06-04T09:30:18Z biological_process owl:Class GO:0018567 biolink:NamedThing styrene dioxygenase activity Catalysis of the reaction: styrene + O2 + NADH + H+ = NAD+ + styrene cis-glycol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0256|EC:1.13.11.- molecular_function owl:Class GO:1990647 biolink:NamedThing C/EBP complex A dimeric, sequence specific DNA-binding transcription factor complex regulating the expression of genes involved in immune and inflammatory responses. Exists at least as alpha and beta homodimeric forms. Binds to regulatory regions of several acute-phase and cytokines genes and probably plays a role in the regulation of acute-phase reaction, inflammation and hemopoiesis. The consensus recognition site is 5'-T[TG]NNGNAA[TG]-3'. Transcription factor activity is inhibited by binding of CHOP forming heterodimers with alternative transcription factor activities. tmpzr1t_l9r_go_relaxed.owl C/EBPalpha complex|C/EBPbeta complex|C/EBP homodimer complex|C/EBPalpha homodimer complex|C/EBPbeta homodimer complex|C/EBP transcription factor complex An example of this is Cebpa in rat (P05554) in PMID:8657121 (inferred from direct assay). bhm 2015-02-19T11:00:09Z cellular_component owl:Class GO:0042382 biolink:NamedThing paraspeckles Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Paraspeckle cellular_component owl:Class GO:0009885 biolink:NamedThing transmembrane histidine kinase cytokinin receptor activity Combining with a cytokinin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-histidine = ADP + a protein-L-histidine phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008801 biolink:NamedThing beta-phosphoglucomutase activity Catalysis of the reaction: beta-D-glucose 1-phosphate = beta-D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl beta-D-glucose 1,6-phosphomutase activity MetaCyc:BETA-PHOSPHOGLUCOMUTASE-RXN|RHEA:20113|KEGG_REACTION:R02728|EC:5.4.2.6 molecular_function owl:Class GO:0050654 biolink:NamedThing chondroitin sulfate proteoglycan metabolic process The chemical reactions and pathways involving chondroitin sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are chondroitin sulfate. Chondroitin sulfates are a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues; the repeat units consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate. tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate proteoglycan metabolism|chondroitin sulphate proteoglycan metabolic process|chondroitin sulfate proteoglycan metabolism biological_process owl:Class GO:0003225 biolink:NamedThing left ventricular trabecular myocardium morphogenesis The process in which the anatomical structures of cardiac left ventricular trabecular myocardium are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T10:45:09Z biological_process owl:Class GO:0052168 biolink:NamedThing modulation by symbiont of defense-related host calcium-dependent protein kinase pathway Any process in which an organism modulates the frequency, rate or extent of the host calcium-dependent protein kinase signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related calcium-dependent protein kinase pathway in other organism involved in symbiotic interaction|modulation by organism of defense-related host CDPK pathway GO:0052307 biological_process owl:Class GO:0008819 biolink:NamedThing cobinamide kinase activity Catalysis of the reaction: cobinamide + ATP = cobinamide phosphate + ADP. This reaction is the phosphorylation of the hydroxyl group of the 1-amino-2-propanol residue of cobinamide, in the presence of ATP, to form cobinamide phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016992 biolink:NamedThing lipoate synthase activity Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl. tmpzr1t_l9r_go_relaxed.owl lipoyl synthase activity|lipoic acid synthase|protein 6-N-(octanoyl)lysine:sulfur sulfurtransferase activity|LipA|LS|protein N6-(octanoyl)lysine:sulfur sulfurtransferase activity Reactome:R-HSA-6793591|EC:2.8.1.8|MetaCyc:RXN0-949|RHEA:16585 GO:0017140 molecular_function owl:Class GO:0010018 biolink:NamedThing far-red light signaling pathway The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. tmpzr1t_l9r_go_relaxed.owl far-red light signal transduction|far red light signalling pathway|far red signaling pathway biological_process owl:Class GO:0070337 biolink:NamedThing 3'-flap-structured DNA binding Binding to a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018095 biolink:NamedThing protein polyglutamylation The addition of one or more alpha-linked glutamyl units to the gamma carboxyl group of peptidyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0202 biological_process owl:Class GO:0072095 biolink:NamedThing regulation of branch elongation involved in ureteric bud branching Any process that modulates the frequency, rate or extent of branch elongation involved in ureteric bud branching, the growth of a branch of the ureteric bud along its axis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-10T01:41:18Z biological_process owl:Class GO:0042329 biolink:NamedThing structural constituent of collagen and cuticulin-based cuticle The action of a molecule that contributes to the structural integrity of a collagen and cuticulin-based cuticle. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl structural constituent of cuticle molecular_function owl:Class GO:0045515 biolink:NamedThing interleukin-18 receptor binding Binding to an interleukin-18 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-18 receptor ligand|IL-18 molecular_function owl:Class GO:0034297 biolink:NamedThing oidium formation The process in which oidia, a type of asexual spore found in fungi, are formed. Oidia are borne a few at a time on very simple hyphae that protrude a short distance into the substrate, and are usually presumed not to constitute the main reproductive strategy of the fungus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990976 biolink:NamedThing protein transport along microtubule to mitotic spindle pole body The directed movement of a protein along a microtubule to the mitotic spindle pole body, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl vw 2016-06-30T13:09:08Z biological_process owl:Class GO:0003328 biolink:NamedThing pancreatic D cell fate commitment The commitment of a cell to a pancreatic D cell fate and its capacity to differentiate into a pancreatic D cell. A delta cell is a cell of the pancreas that produces somatostatin. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T08:33:36Z biological_process owl:Class GO:0071909 biolink:NamedThing determination of stomach left/right asymmetry Determination of the asymmetric location of the stomach with respect to the left and right halves of the organism. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-22T10:25:30Z biological_process owl:Class GO:0046918 biolink:NamedThing N-terminal peptidyl-glycine N-palmitoylation The covalent attachment of a palmitoyl group to a nitrogen (N) atom in an N-terminal glycine residue to form N-palmitoyl-glycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0339 Palmitoylation of glycine only occurs when glycine is at the N-terminal position of a protein. biological_process owl:Class GO:0071542 biolink:NamedThing dopaminergic neuron differentiation The process in which a neuroblast acquires the specialized structural and functional features of a dopaminergic neuron, a neuron that secretes dopamine. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-12T02:28:44Z biological_process owl:Class GO:0006207 biolink:NamedThing 'de novo' pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. tmpzr1t_l9r_go_relaxed.owl 'de novo' pyrimidine base formation|'de novo' pyrimidine base biosynthetic process|'de novo' pyrimidine base anabolism|'de novo' pyrimidine base synthesis|'de novo' pyrimidine base biosynthesis biological_process owl:Class GO:0106235 biolink:NamedThing ceramide-1-phosphate phosphatase activity Catalysis of the reaction: ceramide-1-phosphate + H2O = ceramide+ phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:50888 hjd 2019-11-21T20:40:39Z molecular_function owl:Class GO:0042577 biolink:NamedThing lipid phosphatase activity Catalysis of the reaction: a phospholipid + H2O = a lipid + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904843 biolink:NamedThing cellular response to nitroglycerin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitroglycerin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to nitroglycerine|cellular response to nitroglycerol|cellular response to trinitroglycerol|cellular response to trinitroglycerin sl 2015-12-07T18:30:55Z biological_process owl:Class GO:1904198 biolink:NamedThing negative regulation of regulation of vascular associated smooth muscle cell membrane depolarization Any process that stops, prevents or reduces the frequency, rate or extent of regulation of vascular smooth muscle cell membrane depolarization. tmpzr1t_l9r_go_relaxed.owl down regulation of regulation of vascular smooth muscle cell membrane depolarization|inhibition of regulation of vascular smooth muscle cell membrane depolarization|down-regulation of regulation of vascular smooth muscle cell membrane depolarization|negative regulation of regulation of vascular smooth muscle cell membrane depolarization|downregulation of regulation of vascular smooth muscle cell membrane depolarization sl 2015-05-07T17:16:44Z biological_process owl:Class GO:0008812 biolink:NamedThing choline dehydrogenase activity Catalysis of the reaction: A + choline = AH(2) + betaine aldehyde. tmpzr1t_l9r_go_relaxed.owl choline:acceptor 1-oxidoreductase activity|choline oxidase activity|choline:(acceptor) 1-oxidoreductase activity|choline:(acceptor) oxidoreductase activity|choline-cytochrome c reductase activity Reactome:R-HSA-6797961|RHEA:17433|EC:1.1.99.1|KEGG_REACTION:R01025|MetaCyc:CHD-RXN molecular_function owl:Class GO:0009979 biolink:NamedThing 16:0 monogalactosyldiacylglycerol desaturase activity Catalysis of the introduction of an omega-3 double bond into an unsaturated 16-carbon fatty acid in a monogalactosyldiacylglycerol molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042389 biolink:NamedThing omega-3 fatty acid desaturase activity Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003949 biolink:NamedThing 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity Catalysis of the reaction: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide. tmpzr1t_l9r_go_relaxed.owl 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide aldose-ketose-isomerase activity|1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide ketol-isomerase activity|phosphoribosylformiminoaminophosphoribosylimidazolecarboxamide isomerase activity|N-(phosphoribosylformimino) aminophosphoribosylimidazolecarboxamide isomerase activity|phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase activity|N-(5'-phospho-D-ribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide isomerase activity MetaCyc:PRIBFAICARPISOM-RXN|EC:5.3.1.16|RHEA:15469|KEGG_REACTION:R04640 molecular_function owl:Class GO:0060982 biolink:NamedThing coronary artery morphogenesis The process in which the anatomical structures of coronary arteries are generated and organized. Coronary arteries are blood vessels that transport blood to the heart muscle. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-06T02:58:52Z biological_process owl:Class GO:0047157 biolink:NamedThing myelin-proteolipid O-palmitoyltransferase activity Catalysis of the reaction: [myelin proteolipid] + palmityl-CoA = [myelin proteolipid] O-palmitoylprotein + CoA. tmpzr1t_l9r_go_relaxed.owl myelin PLP acyltransferase activity|[myelin-proteolipid] O-palmitoyltransferase activity|acyl-protein synthase activity|palmitoyl-CoA:[myelin-proteolipid] O-palmitoyltransferase activity https://github.com/geneontology/go-ontology/issues/21319 EC:2.3.1.100|MetaCyc:2.3.1.100-RXN molecular_function owl:Class GO:0010367 biolink:NamedThing extracellular isoamylase complex A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in animals are localized in the extracellular space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047730 biolink:NamedThing carnosine synthase activity Catalysis of the reaction: ATP + L-histidine + beta-alanine = AMP + diphosphate + carnosine. tmpzr1t_l9r_go_relaxed.owl carnosine-homocarnosine synthetase activity|L-histidine:beta-alanine ligase (AMP-forming)|carnosine synthetase activity|homocarnosine-carnosine synthetase activity|carnosine-anserine synthetase activity MetaCyc:CARNOSINE-SYNTHASE-RXN|EC:6.3.2.11|Reactome:R-HSA-6786245|RHEA:19297 molecular_function owl:Class GO:0006785 biolink:NamedThing heme B biosynthetic process The chemical reactions and pathways resulting in the formation of heme B, a Fe(II) porphyrin complex readily isolated from the hemoglobin of beef blood, but also found in other proteins including other hemoglobins, myoglobins, cytochromes P-450, catalases, peroxidases as well as b type cytochromes. tmpzr1t_l9r_go_relaxed.owl heme B synthesis|protoheme biosynthesis|heme B biosynthesis|heme B anabolism|heme B formation|protoheme biosynthetic process|haem B biosynthesis|haem B biosynthetic process biological_process owl:Class GO:1990328 biolink:NamedThing RPB4-RPB7 complex A protein complex that cycles between the nucleus where it is part of the RNA polymerase II and the cytoplasmic mRNA processing body where it mediates the two major cytoplasmic mRNA decay pathways. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II, RPB4-RPB7 subcomplex https://github.com/geneontology/go-ontology/issues/10931 bhm 2014-03-17T09:37:07Z cellular_component owl:Class GO:0061055 biolink:NamedThing myotome development The progression of the myotome over time, from its formation to the mature structure. The myotome is the portion of the somite that will give rise to muscle. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-02T12:11:01Z biological_process owl:Class GO:0000703 biolink:NamedThing oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity Catalysis of the removal oxidized pyrimidine bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar. The reaction involves formation of a covalent enzyme-pyrimidine base intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl pyrimidine-specific oxidized base lesion DNA N-glycosylase activity|endonuclease III|oxidized pyrimidine base lesion DNA N-glycosylase activity|DNA glycosylase/beta-lyase|bifunctional DNA glycosylase|endodeoxyribonuclease III|endonuclease VIII activity|DNA glycosylase/AP-lyase Reactome:R-HSA-110227|Reactome:R-HSA-110226|Reactome:R-HSA-110224 Consider also annotating to the molecular function term 'DNA-(apurinic or apyrimidinic site) lyase activity ; GO:0003906'. GO:0019004 molecular_function owl:Class GO:0010349 biolink:NamedThing L-galactose dehydrogenase activity Catalysis of the reaction: L-galactose + NAD+ = L-galactono-1,4-lactone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl L-galactose 1-dehydrogenase activity https://github.com/geneontology/go-ontology/issues/21831|https://github.com/geneontology/go-ontology/issues/3975 MetaCyc:RXN-1884|EC:1.1.1.316|RHEA:31559 molecular_function owl:Class GO:0140208 biolink:NamedThing apoptotic process in response to mitochondrial fragmentation Any apoptotic process that occurs as a result of mitochondrial fragmentation. tmpzr1t_l9r_go_relaxed.owl apoptosis in response to mitochondrial fragmentation pg 2018-03-08T16:54:17Z biological_process owl:Class GO:1901499 biolink:NamedThing response to hexane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T15:14:49Z biological_process owl:Class GO:0034690 biolink:NamedThing integrin alphaD-beta2 complex An integrin complex that comprises one alphaD subunit and one beta2 subunit. tmpzr1t_l9r_go_relaxed.owl Itgad-Itgb2 complex|alphaD-beta2 integrin complex cellular_component owl:Class GO:0018727 biolink:NamedThing 2-phenanthrol sulfotransferase activity Catalysis of the reaction: 2-phenanthrol + X-SO3(-) = HX + 2-phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl 2-phenanthrol sulphotransferase activity UM-BBD_reactionID:r0563 molecular_function owl:Class GO:0010583 biolink:NamedThing response to cyclopentenone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902286 biolink:NamedThing semaphorin-plexin signaling pathway involved in dendrite guidance Any semaphorin-plexin signaling pathway that is involved in dendrite guidance. tmpzr1t_l9r_go_relaxed.owl semaphorin-plexin signaling pathway involved in dendritic guidance|semaphorin-plexin signalling pathway involved in dendritic guidance|semaphorin-plexin signalling pathway involved in dendrite guidance pr 2013-07-08T16:06:55Z biological_process owl:Class GO:0097593 biolink:NamedThing ventral disc microtubule array A part of the ventral disc of Giardia species (trophozoite stage) consisting of a spiral array of microtubules linked to the ventral membrane. These microtubules form the base of the ventral disc dorsal microribbons that extend nearly perpendicular from the membrane. tmpzr1t_l9r_go_relaxed.owl ventral disc spiral microtubule array|ventral disk microtubule array|spiral microtubule array Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-04-03T11:17:17Z cellular_component owl:Class GO:0005582 biolink:NamedThing collagen type XV trimer A collagen homotrimer of alpha1(XV) chains; a chondroitin sulfate proteoglycan often found in specialized basement membranes where it bridges between fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070709 biolink:NamedThing RNA guanosine insertion The modification of an RNA molecule by insertion of a guanosine nucleotide. tmpzr1t_l9r_go_relaxed.owl RNA G insertion mah 2009-06-08T04:57:26Z biological_process owl:Class GO:0061945 biolink:NamedThing regulation of protein K48-linked ubiquitination Any process that modulates the rate, frequency or extent of protein K-48-linked ubiquitination, a protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-22T11:45:43Z biological_process owl:Class GO:0062205 biolink:NamedThing miltiradiene synthase activity Catalysis of the reaction: (+)-copalyl diphosphate = diphosphate + miltiradiene. tmpzr1t_l9r_go_relaxed.owl multiradiene synthase activity MetaCyc:RXN-13338|EC:4.2.3.131|RHEA:33983 dph 2020-01-03T14:05:49Z GO:0102353 molecular_function owl:Class GO:0031830 biolink:NamedThing type 5A serotonin receptor binding Binding to a type 5A serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 5A receptor binding|type 5A serotonin receptor ligand molecular_function owl:Class GO:0071549 biolink:NamedThing cellular response to dexamethasone stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-13T01:24:49Z biological_process owl:Class GO:0048170 biolink:NamedThing positive regulation of long-term neuronal synaptic plasticity A process that increases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers. tmpzr1t_l9r_go_relaxed.owl up regulation of long-term neuronal synaptic plasticity|up-regulation of long-term neuronal synaptic plasticity|activation of long-term neuronal synaptic plasticity|stimulation of long-term neuronal synaptic plasticity|upregulation of long-term neuronal synaptic plasticity Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0098505 biolink:NamedThing G-rich strand telomeric DNA binding Binding to G-rich, single-stranded, telomere-associated DNA. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-23T13:16:24Z molecular_function owl:Class GO:0070766 biolink:NamedThing endobrevin-synaptobrevin 2-alpha-SNAP-NSF-syntaxin-4 complex A SNARE complex that contains endobrevin (VAMP8), synaptobrevin 2 (VAMP2), alpha-SNAP, NSF, and syntaxin 4 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Stx4-Napa-Vamp3-Nsf-Vamp2 complex|SNARE complex (Stx4, Napa, Vamp3, Nsf, Vamp2) mah 2009-06-29T04:41:55Z cellular_component owl:Class GO:0034633 biolink:NamedThing retinol transport The directed movement of retinol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Retinol is vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl vitamin A1 transport biological_process owl:Class GO:0035093 biolink:NamedThing spermatogenesis, exchange of chromosomal proteins The replacement of somatic histones within sperm chromatin with sperm-specific histones or protamines with unique DNA-binding properties, resulting in condensation of the sperm chromatin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22255 biological_process owl:Class GO:0140301 biolink:NamedThing pollen-stigma interaction The interactions (or cell to cell communication) that occur between the pollen grain (male gametophyte) and the stigmatic tissues of the female sporophyte after the pollen reaches the stigmatic papillae. tmpzr1t_l9r_go_relaxed.owl pg 2019-02-22T13:58:21Z biological_process owl:Class GO:0098846 biolink:NamedThing podocyte foot A cell projection of a podocyte (glomerular visceral epithelial cell) forming a foot-like structure projecting from a podocyte primary projection, that wraps around capillaries of a renal glomerulus. Adjacent feet (pedicels) interdigitate, leaving thin filtration slits between them, which are covered by slit diaphragms. tmpzr1t_l9r_go_relaxed.owl secondary podocyte projection|pedicel|podocyte foot process Wikipedia:Podocyte cellular_component owl:Class GO:0014031 biolink:NamedThing mesenchymal cell development The process aimed at the progression of a mesenchymal cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051525 biolink:NamedThing NFAT protein binding Binding to NFAT (nuclear factor of activated T cells) proteins, a family of transcription factors. NFAT proteins have crucial roles in the development and function of the immune system. tmpzr1t_l9r_go_relaxed.owl NFATx binding|NFATc4 binding|non-calcium-regulated NFAT protein binding|NFATc2 binding|NFATc binding|NFAT3 protein binding|NFAT2 protein binding|NFAT4 protein binding|NFATp binding|NFAT1 protein binding|nuclear factor of activated T cell protein binding|NFATc1 binding|NFAT binding|NFAT5 protein binding|NFATc3 binding GO:0051526|GO:0051529|GO:0051527|GO:0051530|GO:0051528 molecular_function owl:Class GO:0051433 biolink:NamedThing BH2 domain binding Binding to a BH2 protein domain, present in Bcl-2 family members. Proteins that act as inhibitors of apoptosis harbour at least three BH domains: BH1, BH2 and BH3; the BH1 and BH2 domains are found in all death antagonists of the Bcl-2 family but only in one class of death agonists. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046036 biolink:NamedThing CTP metabolic process The chemical reactions and pathways involving CTP, cytidine triphosphate. tmpzr1t_l9r_go_relaxed.owl CTP metabolism|CTP deamination GO:0006243 biological_process owl:Class GO:0048528 biolink:NamedThing post-embryonic root development The process whose specific outcome is the progression of the post-embryonic root over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018008 biolink:NamedThing N-terminal peptidyl-glycine N-myristoylation The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine. tmpzr1t_l9r_go_relaxed.owl N-terminal peptidyl-glycine N-myristylation RESID:AA0059 biological_process owl:Class GO:0140625 biolink:NamedThing opioid growth factor receptor activity Combining with the opioid growth factor (OGF, met-enkephalin) and transmitting the signal across the nuclear membrane. Met-enkephalin is an endogenous opioid peptide that binds to opioid and opioid growth factor receptors, regulating tissue growth in a variety of cellular processes. tmpzr1t_l9r_go_relaxed.owl methionine enkephalin receptor activity|metenkefalin receptor activity|met-enkephalin receptor activity https://github.com/geneontology/go-ontology/issues/21110 pg 2021-03-17T13:15:33Z molecular_function owl:Class GO:0006211 biolink:NamedThing 5-methylcytosine catabolic process The chemical reactions and pathways resulting in the breakdown of 5-methylcytosine, a methylated base of DNA. tmpzr1t_l9r_go_relaxed.owl 5-methylcytosine breakdown|5-methylcytosine catabolism|5-methylcytosine degradation biological_process owl:Class GO:1903563 biolink:NamedThing microtubule bundle formation involved in horsetail-astral microtubule organization Any microtubule bundle formation that is involved in horsetail-astral microtubule organization. tmpzr1t_l9r_go_relaxed.owl microtubule bundling involved in horsetail-astral microtubule organisation|microtubule bundling involved in horsetail-astral microtubule organization|microtubule bundle formation involved in horsetail-astral microtubule organisation|microtubule bundle formation involved in horsetail-astral microtubule array organization|microtubule bundling involved in horsetail-astral microtubule array organization vw 2014-10-23T11:06:35Z biological_process owl:Class GO:0009538 biolink:NamedThing photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. tmpzr1t_l9r_go_relaxed.owl photosystem I reaction centre cellular_component owl:Class GO:0052662 biolink:NamedThing zeaxanthin epoxidase activity Catalysis of the reaction: all-trans-zeaxanthin + 4 H+ + 2 O2 + 4 reduced [2Fe-2S]-[ferredoxin] = all-trans-violaxanthin + 2 H2O + 4 oxidized [2Fe-2S]-[ferredoxin]. tmpzr1t_l9r_go_relaxed.owl zeaxanthin epoxidase [overall] activity|antheraxanthin epoxidase activity|zea-epoxidase activity https://github.com/geneontology/go-ontology/issues/21412 KEGG_REACTION:R06947|KEGG_REACTION:R07200|KEGG_REACTION:R07199|EC:1.14.15.21|MetaCyc:RXN-7979|MetaCyc:RXN-7978|KEGG_REACTION:R06946|RHEA:24084 Multi-step reaction: RHEA:14937 and RHEA:24084. Formerly EC:1.14.13.90. GO:0052663|GO:0009540 molecular_function owl:Class GO:0004530 biolink:NamedThing deoxyribonuclease I activity Catalysis of the endonucleolytic cleavage of DNA to 5'-phosphodinucleotide and 5'-phosphooligonucleotide end products. tmpzr1t_l9r_go_relaxed.owl DNase I|thymonuclease, dornase activity|thymonuclease activity|pancreatic deoxyribonuclease|pancreatic dornase|dornava|Escherichia coli endonuclease I|DNA endonuclease activity|DNase activity|deoxyribonuclease A|DNA nuclease activity|endodeoxyribonuclease I|deoxyribonuclease (pancreatic)|pancreatic DNase activity|DNAase activity|deoxyribonucleic phosphatase activity|dornavac|DNA depolymerase activity|alkaline deoxyribonuclease activity|alkaline DNase activity EC:3.1.21.1|MetaCyc:3.1.21.1-RXN molecular_function owl:Class GO:0007546 biolink:NamedThing somatic processes downstream of sex determination signal The events determining the somatic sexual phenotype after the initial transmission of that phenotype to soma-specific information pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032482 biolink:NamedThing Rab protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033401 biolink:NamedThing UUU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UUU codon. tmpzr1t_l9r_go_relaxed.owl phenylalanine tRNA|TTT codon-amino acid adaptor activity Note that in the standard genetic code, TTT codes for phenylalanine. molecular_function owl:Class GO:1990909 biolink:NamedThing Wnt signalosome A multiprotein protein complex containing membrane-localized Wnt receptors and cytosolic protein complexes, which is capable of transmitting the Wnt signal. Contains at least a Wnt protein, LRP5 or LRP6, a member of the Frizzled (Fz) family, Axin and and a Dishevelled (DVL) protein. tmpzr1t_l9r_go_relaxed.owl Wnt-LRP5/6 signalosome|LRP5/6 signalosome|Wnt signalosome complex|LRP6 signalosome Within the Wnt signalosome, beta-catenin phosphorylation is inhibited through internalization of the signalosome complex, resulting in the sequestration of GSK3-beta into multi-vesicular bodies. No longer phosphorylated and targeted for degradation, beta-catenin is free to enter the nucleus and modulate downstream transcription. bf 2015-12-07T14:04:23Z cellular_component owl:Class GO:0097420 biolink:NamedThing skein-like inclusion Intracytoplasmic filamentous structure frequently encountered in preparations immunostained for ubiquitin. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_20090103 pr 2012-11-06T20:58:35Z cellular_component owl:Class GO:0016664 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an iron-sulfur protein. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulphur protein as acceptor EC:1.7.7.- molecular_function owl:Class GO:1904428 biolink:NamedThing negative regulation of tubulin deacetylation Any process that stops, prevents or reduces the frequency, rate or extent of tubulin deacetylation. tmpzr1t_l9r_go_relaxed.owl inhibition of tubulin deacetylation|down regulation of tubulin deacetylation|downregulation of tubulin deacetylation|down-regulation of tubulin deacetylation sart 2015-07-03T14:42:58Z biological_process owl:Class GO:0021606 biolink:NamedThing accessory nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the accessory nerve to attain its fully functional state. The spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve. tmpzr1t_l9r_go_relaxed.owl CN XI maturation|spinal accessory nerve maturation biological_process owl:Class GO:0039683 biolink:NamedThing rolling circle double-stranded viral DNA replication A rolling circle viral DNA replication that begins with a double-stranded viral DNA genome. tmpzr1t_l9r_go_relaxed.owl dsDNA rolling circle replication VZ:2676 bf 2013-10-17T14:15:04Z biological_process owl:Class GO:0072494 biolink:NamedThing host multivesicular body A late endosome in which regions of the limiting host cell endosomal membrane invaginate to form internal vesicles; host membrane proteins that enter the internal vesicles are sequestered from the host cytoplasm. tmpzr1t_l9r_go_relaxed.owl host cell multivesicular body mah 2010-12-15T11:48:39Z cellular_component owl:Class GO:0034809 biolink:NamedThing benzo(a)pyrene-cis-4,5-dihydrodiol dehydrogenase activity Catalysis of the reaction: benzo(a)pyrene-cis-4,5-dihydrodiol = 4,5-dihydroxybenzo(a)pyrene + H2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1127 molecular_function owl:Class GO:0042818 biolink:NamedThing pyridoxamine metabolic process The chemical reactions and pathways involving 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxamine metabolism biological_process owl:Class GO:0070843 biolink:NamedThing misfolded protein transport The directed movement of misfolded proteins in a cell, including the movement of proteins between specific compartments or structures within a cell. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-31T12:50:00Z biological_process owl:Class GO:0047516 biolink:NamedThing 1,3-propanediol dehydrogenase activity Catalysis of the reaction: propane-1,3-diol + NAD+ = 3-hydroxypropanal + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 1,3-PD:NAD+ oxidoreductase activity|3-hydroxypropionaldehyde reductase activity|propane-1,3-diol:NAD+ 1-oxidoreductase activity|1,3-propanediol oxidoreductase activity|1,3-propanediol:NAD+ oxidoreductase activity EC:1.1.1.202|MetaCyc:13-PROPANEDIOL-DEHYDROGENASE-RXN|RHEA:23188 molecular_function owl:Class GO:0120154 biolink:NamedThing negative regulation of ERBB4 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of ERBB4 signaling pathway. tmpzr1t_l9r_go_relaxed.owl krc 2018-05-01T17:12:23Z biological_process owl:Class GO:0043015 biolink:NamedThing gamma-tubulin binding Binding to the microtubule constituent protein gamma-tubulin. tmpzr1t_l9r_go_relaxed.owl gamma tubulin binding molecular_function owl:Class GO:0034458 biolink:NamedThing 3'-5' RNA helicase activity Unwinding of an RNA helix in the 3' to 5' direction, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl 3' to 5' RNA helicase activity|ATP-dependent 3' to 5' RNA helicase activity|ATP-dependent 3'-5' RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 GO:0034459 molecular_function owl:Class GO:0038170 biolink:NamedThing somatostatin signaling pathway The series of molecular signals generated as a consequence of the peptide somatostatin (SST) binding to a somatostatin receptor (SSTR). The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl somatostatin signalling pathway|somatotrophin release inhibiting factor signaling pathway|SST signaling pathway|SRIF signaling pathway|somatostatin-activated somatostatin receptor signaling pathway|somatostatin-mediated signaling pathway bf 2012-06-12T10:33:21Z biological_process owl:Class GO:0038169 biolink:NamedThing somatostatin receptor signaling pathway The series of molecular signals generated as a consequence of a somatostatin receptor (SSTR) binding to one of its physiological ligands and transmitting the signal to a heterotrimeric G-protein complex. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl SSTR signaling pathway|SST receptor signaling pathway In addition to somatostatin (SST), the somatostatin receptors (SSTRs) can also be activated by the agonist cortistatin (CST). For signal transduction specifically initiated by the ligand somatostatin, consider instead annotating to the child term 'somatostatin signaling pathway ; GO:0038170'. bf 2012-06-12T10:30:01Z biological_process owl:Class GO:0039530 biolink:NamedThing MDA-5 signaling pathway Any series of molecular signals generated as a consequence of the cytoplasmic pattern recognition receptor (PRR) MDA-5 (also known as IFIH1) binding to viral RNA. MDA-5 detects RNA synthesized during active viral replication and triggers a signaling pathway to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. tmpzr1t_l9r_go_relaxed.owl MDA5 signaling pathway|MDA-5 signalling pathway|melanoma differentiation-associated gene 5 signaling pathway|IFIH1 signaling pathway bf 2011-12-20T03:14:52Z biological_process owl:Class GO:0000493 biolink:NamedThing box H/ACA snoRNP assembly The aggregation, arrangement and bonding together of proteins and a box H/ACA snoRNA to form a box H/ACA small nucleolar ribonucleoprotein (snoRNP) complex. tmpzr1t_l9r_go_relaxed.owl box H/ACA small nucleolar ribonucleoprotein complex assembly biological_process owl:Class GO:0034925 biolink:NamedThing pyrene 4,5-monooxygenase activity Catalysis of the reaction: pyrene + O2 + 2 H+ + 2 e- = pyrene-4,5-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0941 molecular_function owl:Class GO:0008114 biolink:NamedThing phosphogluconate 2-dehydrogenase activity Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = 6-phospho-2-dehydro-D-gluconate + NADPH. tmpzr1t_l9r_go_relaxed.owl phosphogluconate dehydrogenase activity|6-phosphogluconate dehydrogenase (NAD)|gluconate 6-phosphate dehydrogenase activity|6-phosphogluconate 2-dehydrogenase activity|6-phospho-D-gluconate:NAD(P)+ 2-oxidoreductase activity|6-phosphogluconic dehydrogenase activity|2-keto-6-phosphogluconate reductase activity EC:1.1.1.43|MetaCyc:1.1.1.43-RXN molecular_function owl:Class GO:0036216 biolink:NamedThing cellular response to stem cell factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stem cell factor (SCF) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to KITLG|cellular response to KIT ligand|cellular response to SCF|cellular response to hematopoietic growth factor KL bf 2012-04-27T10:30:53Z biological_process owl:Class GO:2000099 biolink:NamedThing regulation of establishment or maintenance of bipolar cell polarity Any process that modulates the frequency, rate or extent of establishment or maintenance of bipolar cell polarity. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-14T04:40:51Z biological_process owl:Class GO:0030741 biolink:NamedThing inositol 1-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + myo-inositol = 1D-1-O-methyl-myo-inositol + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl inositol 3-O-methyltransferase activity|inositol 3-O-methyltransferase (name based on 1L-numbering system and not 1D-numbering)|S-adenosylmethionine:myo-inositol 3-methyltransferase activity|myo-inositol 3-O-methyltransferase activity|S-adenosyl-L-methionine:myo-inositol 3-O-methyltransferase activity|inositol D-1-methyltransferase activity|S-adenosyl-L-methionine:1D-myo-inositol 1-O-methyltransferase activity KEGG_REACTION:R01188|EC:2.1.1.40|MetaCyc:MYO-INOSITOL-3-O-METHYLTRANSFERASE-RXN|RHEA:17565 molecular_function owl:Class GO:0052792 biolink:NamedThing endo-xylogalacturonan hydrolase activity Catalysis of the endohydrolysis of xylogalacturonate by cleavage of the alpha-(1,4)-linkage. Xylogalacturonate (XGA) is composed of a chain of alpha-(1,4)-linked D-galacturonic acid residues with beta-D-xylose substituted at the O3 position. tmpzr1t_l9r_go_relaxed.owl endo-galacturonase activity ai 2011-10-05T03:57:30Z molecular_function owl:Class GO:0052813 biolink:NamedThing phosphatidylinositol bisphosphate kinase activity Catalysis of the reaction: ATP + a phosphatidylinositol bisphosphate = ADP + a phosphatidylinositol trisphosphate. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-21T03:55:36Z molecular_function owl:Class GO:0030554 biolink:NamedThing adenyl nucleotide binding Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061857 biolink:NamedThing endoplasmic reticulum stress-induced pre-emptive quality control The response to endoplasimic reticulum stress in which nascent proteins are degraded by attenuation of their translocation into the ER followed by rerouting to the cytosol without cleavage of the signal peptide, and subsequent degradation by the proteasome. tmpzr1t_l9r_go_relaxed.owl ER pQC|ER stress-indiced pre-emptive quality control dph 2017-03-28T13:05:03Z biological_process owl:Class GO:0030287 biolink:NamedThing cell wall-bounded periplasmic space The region between the plasma membrane and the cell wall in organisms lacking an outer cell membrane such as yeast and Gram positive bacteria. The region is thinner than the equivalent in Gram negative bacteria. tmpzr1t_l9r_go_relaxed.owl cell wall-enclosed periplasmic space|IWZ|inner wall zone|cell wall bounded periplasmic space cellular_component owl:Class GO:0052675 biolink:NamedThing 3-methylbutanol:NADP oxidoreductase activity Catalysis of the reaction: 3-methylbutanol + NADP+ = 3-methylbutanal + NADPH + H+. 3-methylbutanal is also known as isovaleraldehyde. tmpzr1t_l9r_go_relaxed.owl 3-methylbutanol:NADP+ oxidoreductase activity|3-methylbutyraldehyde reductase (NADP) activity|3-methylbutanal reductase (NADP) activity|isoamyl alcohol oxidase (NADP) activity KEGG_REACTION:R05686|RHEA:18525 ai 2011-04-12T11:19:27Z molecular_function owl:Class GO:0097164 biolink:NamedThing ammonium ion metabolic process The chemical reactions and pathways involving the ammonium ion. tmpzr1t_l9r_go_relaxed.owl ammonium metabolic process|ammonium ion metabolism pr 2011-09-28T04:21:30Z biological_process owl:Class GO:0008396 biolink:NamedThing oxysterol 7-alpha-hydroxylase activity Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP7B1 Reactome:R-HSA-5602885|Reactome:R-HSA-192178|Reactome:R-HSA-191972|Reactome:R-HSA-192065 molecular_function owl:Class GO:0001860 biolink:NamedThing complement component C3d receptor activity Combining with the C3d product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048847 biolink:NamedThing adenohypophysis formation The process that gives rise to adenohypophysis. This process pertains to the initial formation of a structure from unspecified parts. The adenohypophysis is the anterior part of the pituitary. It secretes a variety of hormones and its function is regulated by the hypothalamus. tmpzr1t_l9r_go_relaxed.owl anterior pituitary gland biosynthesis|anterior pituitary biosynthesis|adenophysis biosynthesis|adenophysis formation|anterior pituitary gland formation|anterior pituitary formation biological_process owl:Class GO:0050208 biolink:NamedThing polysialic-acid O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an alpha-2,8-linked polymer of sialic acid = CoA + polysialic acid acetylated at O-7 or O-9. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:polysialic-acid O-acetyltransferase activity MetaCyc:POLYSIALIC-ACID-O-ACETYLTRANSFERASE-RXN|RHEA:11604|EC:2.3.1.136 molecular_function owl:Class GO:2000518 biolink:NamedThing negative regulation of T-helper 1 cell activation Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 1 cell activation. tmpzr1t_l9r_go_relaxed.owl negative regulation of Th1 cell activation ebc 2011-03-22T10:40:26Z biological_process owl:Class GO:0016546 biolink:NamedThing male courtship behavior, proboscis-mediated licking The process during courtship where the male fly licks the genitalia of a stationary female fly with his proboscis. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behaviour, proboscis-mediated licking|male courtship behavior, licking|male courtship behaviour, licking biological_process owl:Class GO:0050042 biolink:NamedThing lactate-malate transhydrogenase activity Catalysis of the reaction: (S)-lactate + oxaloacetate = malate + pyruvate. tmpzr1t_l9r_go_relaxed.owl malate-lactate transhydrogenase activity|(S)-lactate:oxaloacetate oxidoreductase activity EC:1.1.99.7|RHEA:10984|KEGG_REACTION:R01447|MetaCyc:LACTATE-MALATE-TRANSHYDROGENASE-RXN molecular_function owl:Class GO:0004610 biolink:NamedThing phosphoacetylglucosamine mutase activity Catalysis of the reaction: N-acetyl-alpha-D-glucosamine 1-phosphate = N-acetyl-D-glucosamine 6-phosphate. tmpzr1t_l9r_go_relaxed.owl N-acetyl-alpha-D-glucosamine 1,6-phosphomutase activity|N-acetylglucosamine-phosphate mutase activity|N-acetyl-D-glucosamine 1,6-phosphomutase activity|acetylaminodeoxyglucose phosphomutase activity|acetylglucosamine phosphomutase activity|phospho-N-acetylglucosamine mutase activity Reactome:R-HSA-446185|RHEA:23804|EC:5.4.2.3|KEGG_REACTION:R08193|MetaCyc:PHOSACETYLGLUCOSAMINEMUT-RXN molecular_function owl:Class GO:0031567 biolink:NamedThing mitotic cell size control checkpoint signaling A signal transduction process that contributes to a cell size control checkpoint during mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle cell size control checkpoint|signal transduction involved in cell size control checkpoint|mitotic cell size control checkpoint GO:0072471 biological_process owl:Class GO:0098899 biolink:NamedThing spine apparatus lumen The volume enclosed by the spine apparatus membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042242 biolink:NamedThing cobyrinic acid a,c-diamide synthase activity Catalysis of the conversion of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide. tmpzr1t_l9r_go_relaxed.owl cobyrinate a,c-diamide synthase activity|cobyrinate a,c diamide synthase activity|cobyrinate a c diamide synthase activity|CobB|cobyrinate a c-diamide synthase activity EC:6.3.5.11|RHEA:26289 GO:0043775 molecular_function owl:Class GO:0090323 biolink:NamedThing prostaglandin secretion involved in immune response The regulated release of a prostaglandin that contributes to the immune response. Prostaglandins are a group of biologically active metabolites which contain a cyclopentane ring. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. tb 2010-05-12T10:41:04Z biological_process owl:Class GO:0019768 biolink:NamedThing high-affinity IgE receptor activity Combining with high affinity with an immunoglobulin of the IgE isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl high affinity IgE receptor activity|high affinity Fc receptor activity molecular_function owl:Class GO:0050171 biolink:NamedThing phenol beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a phenol = UDP + an aryl beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucosyltransferase activity|phenol-beta-D-glucosyltransferase activity|UDP-glucose glucosyltransferase activity|UDP-glucose:phenol beta-D-glucosyltransferase activity|UDPglucose:phenol beta-D-glucosyltransferase activity|UDPglucosyltransferase activity|phenol b-glucosyltransferase activity|UDP glucosyltransferase activity MetaCyc:PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN|EC:2.4.1.35 molecular_function owl:Class GO:0047925 biolink:NamedThing geranoyl-CoA carboxylase activity Catalysis of the reaction: ATP + bicarbonate + geranoyl-CoA = 3-(4-methylpent-3-en-1-yl)pent-2-enedioyl-CoA + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl geranyl-CoA carboxylase activity|geranoyl coenzyme A carboxylase activity|geranoyl-CoA:carbon-dioxide ligase (ADP-forming) MetaCyc:GERANOYL-COA-CARBOXYLASE-RXN|UM-BBD_reactionID:r1166|EC:6.4.1.5|KEGG_REACTION:R03494|RHEA:17701 molecular_function owl:Class GO:0071159 biolink:NamedThing NF-kappaB complex A protein complex that consists of a homo- or heterodimer of members of a family of structurally related proteins that contain a conserved N-terminal region called the Rel homology domain (RHD). In the nucleus, NF-kappaB complexes act as transcription factors. In unstimulated cells, NF-kappaB dimers are sequestered in the cytoplasm by IkappaB monomers; signals that induce NF-kappaB activity cause degradation of IkappaB, allowing NF-kappaB dimers to translocate to the nucleus and induce gene expression. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-17T02:03:34Z cellular_component owl:Class GO:0001671 biolink:NamedThing ATPase activator activity Binds to and increases the activity of an ATP hydrolysis activity. tmpzr1t_l9r_go_relaxed.owl ATPase stimulator activity https://github.com/geneontology/go-ontology/issues/20955 Reactome:R-HSA-5251955|Reactome:R-HSA-5251959 molecular_function owl:Class GO:0002389 biolink:NamedThing tolerance induction in Peyer's patch Tolerance induction taking place in the Peyer's patches. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044488 biolink:NamedThing modulation of voltage-gated sodium channel activity in other organism Any process in which an organism effects a change in the frequency, rate or extent of the activity of a voltage-gated sodium channel in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-01T11:48:25Z biological_process owl:Class GO:1905431 biolink:NamedThing microcystin transport The directed movement of a microcystin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl cvs 2016-09-13T23:15:51Z biological_process owl:Class GO:0120058 biolink:NamedThing positive regulation of small intestinal transit Any process that increases the frequency, rate or extent of any small intestinal transit process, the migration of ingested material along the length of the small intestine. tmpzr1t_l9r_go_relaxed.owl positive regulation of small intestine transit|positive regulation of small bowel transit krc 2017-06-13T20:58:23Z biological_process owl:Class GO:0034195 biolink:NamedThing L-galactonate catabolic process The chemical reactions and pathways resulting in the breakdown of L-galactonate, the anion of L-galactonic acid. tmpzr1t_l9r_go_relaxed.owl L-galactonate degradation|L-galactonate breakdown|L-galactonate catabolism MetaCyc:GALACTCAT-PWY biological_process owl:Class GO:0019886 biolink:NamedThing antigen processing and presentation of exogenous peptide antigen via MHC class II The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein. tmpzr1t_l9r_go_relaxed.owl antigen presentation, exogenous antigen via MHC class II|antigen processing, exogenous antigen via major histocompatibility complex class II|antigen presentation, exogenous peptide antigen|exogenous peptide antigen processing and presentation via MHC class II GO:0048005|GO:0042591 biological_process owl:Class GO:0004754 biolink:NamedThing saccharopine dehydrogenase (NAD+, L-lysine-forming) activity Catalysis of the reaction: L-saccharopine + H(2)O + NAD(+) = 2-oxoglutarate + L-lysine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl N6-(glutar-2-yl)-L-lysine:NAD oxidoreductase (L-lysine-forming)|N6-(L-1,3-dicarboxypropyl)-L-lysine:NAD+ oxidoreductase (L-lysine-forming)|6-N-(L-1,3-dicarboxypropyl)-L-lysine:NAD+ oxidoreductase (L-lysine-forming)|dehydrogenase, saccharopine (nicotinamide adenine dinucleotide, lysine forming)|epsilon-N-(L-glutaryl-2)-L-lysine:NAD oxidoreductase (L-lysine forming) EC:1.5.1.7|MetaCyc:1.5.1.7-RXN|KEGG_REACTION:R00715|RHEA:12440 molecular_function owl:Class GO:1903428 biolink:NamedThing positive regulation of reactive oxygen species biosynthetic process Any process that activates or increases the frequency, rate or extent of reactive oxygen species biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of reactive oxygen species generation|upregulation of reactive oxygen species biosynthetic process|up regulation of reactive oxygen species synthesis|upregulation of ROS generation|activation of reactive oxygen species synthesis|up-regulation of reactive oxygen species formation|upregulation of reactive oxygen species synthesis|activation of reactive oxygen species biosynthetic process|up-regulation of reactive oxygen species biosynthesis|up-regulation of ROS generation|upregulation of reactive oxygen species formation|positive regulation of reactive oxygen species biosynthesis|upregulation of reactive oxygen species anabolism|activation of reactive oxygen species anabolism|positive regulation of reactive oxygen species anabolism|up regulation of ROS formation|up regulation of reactive oxygen species biosynthesis|up regulation of reactive oxygen species formation|activation of ROS formation|up-regulation of reactive oxygen species anabolism|activation of reactive oxygen species generation|upregulation of ROS formation|up-regulation of reactive oxygen species generation|upregulation of reactive oxygen species biosynthesis|activation of ROS generation|positive regulation of reactive oxygen species synthesis|upregulation of reactive oxygen species generation|positive regulation of ROS formation|up regulation of reactive oxygen species generation|up regulation of ROS generation|up-regulation of reactive oxygen species synthesis|up-regulation of reactive oxygen species biosynthetic process|up-regulation of ROS formation|up regulation of reactive oxygen species biosynthetic process|positive regulation of ROS generation|positive regulation of reactive oxygen species formation|up regulation of reactive oxygen species anabolism|activation of reactive oxygen species formation|activation of reactive oxygen species biosynthesis bf 2014-09-11T10:02:05Z biological_process owl:Class GO:0071690 biolink:NamedThing cardiac muscle myosin thick filament assembly The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in cardiac muscle. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-25T03:55:44Z biological_process owl:Class GO:0032611 biolink:NamedThing interleukin-1 beta production The appearance of interleukin-1 beta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-1 beta secretion|interleukin-1 beta biosynthetic process|IL-1 beta production GO:0050720|GO:0050702 biological_process owl:Class GO:0034028 biolink:NamedThing 5-(carboxyamino)imidazole ribonucleotide synthase activity Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole + ATP + bicarbonate = 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + ADP + 3 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 5-amino-1-(5-phospho-D-ribosyl)imidazole:carbon-dioxide ligase (ADP-forming) activity|N5-carboxyaminoimidazole ribonucleotide synthetase activity|PurK|N5-CAIR synthetase activity EC:6.3.4.18|RHEA:19317|MetaCyc:RXN0-742|KEGG_REACTION:R07404 molecular_function owl:Class GO:0090587 biolink:NamedThing protein-phosphocysteine-glucosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + glucosamine (out) = protein cysteine + glucosamine-6-phosphate (in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0047698 biolink:NamedThing beta-alanyl-CoA ammonia-lyase activity Catalysis of the reaction: beta-alanyl-CoA = acryloyl-CoA + NH3. tmpzr1t_l9r_go_relaxed.owl beta-alanyl coenzyme A ammonia-lyase activity|b-alanyl-CoA ammonia-lyase activity|beta-alanyl-CoA ammonia-lyase (acryloyl-CoA-forming) EC:4.3.1.6|RHEA:12416|MetaCyc:BETA-ALANYL-COA-AMMONIA-LYASE-RXN molecular_function owl:Class GO:0044296 biolink:NamedThing dendritic tuft The terminal specialization found in some types of dendrites which consists of numerous small terminal branches, giving the dendrite a tufted appearance. tmpzr1t_l9r_go_relaxed.owl dendrite tuft NIF_Subcellular:sao1340260079 jl 2010-02-04T04:03:29Z cellular_component owl:Class GO:0033509 biolink:NamedThing glutamate catabolic process to propionate The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including propionate. tmpzr1t_l9r_go_relaxed.owl glutamate breakdown to propionate|glutamate degradation to propionate MetaCyc:PWY-5088 biological_process owl:Class GO:0031367 biolink:NamedThing N-terminal peptidyl-glutamine deamination The removal of an amino group from the side chain of an N-terminal glutamine residue of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008872 biolink:NamedThing glucarate dehydratase activity Catalysis of the reaction: D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O. tmpzr1t_l9r_go_relaxed.owl D-glucarate dehydratase activity|D-glucarate hydro-lyase (5-dehydro-4-deoxy-D-glucarate-forming)|D-glucarate hydro-lyase activity RHEA:14573|EC:4.2.1.40|MetaCyc:GLUCARDEHYDRA-RXN molecular_function owl:Class GO:0102390 biolink:NamedThing mycophenolic acid acyl-glucuronide esterase activity Catalysis of the reaction: mycophenolic acid O-acyl-glucuronide(1-) + H2O <=> mycophenolate + H+ + D-glucopyranuronate. tmpzr1t_l9r_go_relaxed.owl RHEA:34179|MetaCyc:RXN-13605|EC:3.1.1.93 molecular_function owl:Class GO:0031955 biolink:NamedThing short-chain fatty acid-CoA ligase activity Catalysis of the reaction: ATP + a short-chain fatty acid + CoA = AMP + diphosphate + an acyl-CoA; short-chain fatty acids are fatty acids with a chain length of less than C6. tmpzr1t_l9r_go_relaxed.owl short-chain fatty acid activation|short-chain-fatty-acid-CoA ligase activity|short-chain fatty-acid-CoA ligase activity molecular_function owl:Class GO:0070325 biolink:NamedThing lipoprotein particle receptor binding Binding to a lipoprotein particle receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001093 biolink:NamedThing TFIIB-class transcription factor binding Binding to a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl krc 2010-10-28T02:46:15Z molecular_function owl:Class GO:0018039 biolink:NamedThing C-terminal peptidyl-glutamine amidation The formation of a C-terminal peptidyl-glutamine amide by hydrolysis and oxidation of an interior Gln-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0086 biological_process owl:Class GO:0032082 biolink:NamedThing negative regulation of type III site-specific deoxyribonuclease activity Any process that stops or reduces the rate of type III restriction endodeoxyribonuclease activity. tmpzr1t_l9r_go_relaxed.owl inhibition of type III restriction endodeoxyribonuclease activity|downregulation of type III restriction endodeoxyribonuclease activity|type III restriction enzyme inhibitor|type III restriction endodeoxyribonuclease inhibitor|negative regulation of type III restriction endodeoxyribonuclease activity|down-regulation of type III restriction endodeoxyribonuclease activity|down regulation of type III restriction endodeoxyribonuclease activity biological_process owl:Class GO:0032073 biolink:NamedThing negative regulation of restriction endodeoxyribonuclease activity Any process that stops or reduces the rate of a restriction endodeoxyribonuclease activity, the catalysis of endonucleolytic cleavage of DNA in a site-specific manner, resulting in double-strand breaks. tmpzr1t_l9r_go_relaxed.owl restriction alleviation|restriction endodeoxyribonuclease inhibitor|restriction enzyme inhibitor|down regulation of restriction endodeoxyribonuclease activity|downregulation of restriction endodeoxyribonuclease activity|inhibition of restriction endodeoxyribonuclease activity|down-regulation of restriction endodeoxyribonuclease activity biological_process owl:Class GO:2000444 biolink:NamedThing negative regulation of toll-like receptor 21 signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of toll-like receptor 21 signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of toll-like receptor 21 signalling pathway|negative regulation of TLR21 signaling pathway bf 2011-03-04T10:32:29Z biological_process owl:Class GO:0018444 biolink:NamedThing translation release factor complex A heterodimeric complex involved in the release of a nascent polypeptide chain from a ribosome. tmpzr1t_l9r_go_relaxed.owl eukaryotic peptide chain release factor|peptide chain release factor cellular_component owl:Class GO:0005922 biolink:NamedThing connexin complex An assembly of six molecules of connexin, made in the Golgi apparatus and subsequently transported to the plasma membrane, where docking of two connexons on apposed plasma membranes across the extracellular space forms a gap junction. tmpzr1t_l9r_go_relaxed.owl connexon|connexon complex NIF_Subcellular:sao445019788 cellular_component owl:Class GO:0102511 biolink:NamedThing pelargonidin 3-O-glucoside 7-O-glucosyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose <=> pelargonidin 3,7-di-O-beta-D-glucoside + vanillate + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.300|MetaCyc:RXN-14440 molecular_function owl:Class GO:0072706 biolink:NamedThing response to sodium dodecyl sulfate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium dodecyl sulfate (SDS) stimulus. tmpzr1t_l9r_go_relaxed.owl response to SDS mah 2012-04-11T03:35:07Z biological_process owl:Class GO:1905846 biolink:NamedThing regulation of cellular response to oxidopamine Any process that modulates the frequency, rate or extent of cellular response to oxidopamine. tmpzr1t_l9r_go_relaxed.owl rz 2017-01-19T10:46:46Z biological_process owl:Class GO:0008772 biolink:NamedThing [isocitrate dehydrogenase (NADP+)] kinase activity Catalysis of the reaction: ATP + (isocitrate dehydrogenase (NADP)) = ADP + (isocitrate dehydrogenase (NADP)) phosphate. tmpzr1t_l9r_go_relaxed.owl isocitrate dehydrogenase kinase/phosphatase activity|IDH kinase/phosphatase activity|isocitrate dehydrogenase (NADP+) kinase activity|IDHK/P|isocitrate dehydrogenase kinase activity|ICDH kinase/phosphatase activity|ATP:isocitrate dehydrogenase (NADP+) phosphotransferase activity|isocitrate dehydrogenase kinase (phosphorylating) activity|isocitrate dehydrogenase (NADP) kinase activity|IDH kinase activity|IDH-K/P RHEA:43540|EC:2.7.11.5|MetaCyc:PHOSICITDEHASE-RXN molecular_function owl:Class GO:0042106 biolink:NamedThing gamma-delta T cell receptor complex A T cell receptor complex in which the TCR heterodimer comprises gamma and delta chains, associated with the CD3 complex; recognizes antigen directly, without a requirement for processing and presentation by an MHC protein. tmpzr1t_l9r_go_relaxed.owl gamma-delta T-lymphocyte receptor complex|gamma-delta T-cell receptor complex|gamma-delta T lymphocyte receptor complex|gamma-delta TCR complex cellular_component owl:Class GO:0018752 biolink:NamedThing epsilon-caprolactam lactamase activity Catalysis of the reaction: epsilon-caprolactam + H2O = H+ + 6-aminohexanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0448|MetaCyc:R561-RXN molecular_function owl:Class GO:0061819 biolink:NamedThing telomeric DNA-containing double minutes formation A telomere maintenance process that results in the formation of small fragments of circular extrachromosomal DNA elements which contain telomeric DNA. It is speculated that telomeric DNA-containing double minutes are formed through a recombination event between the telomere and chromosome-internal TTAGGG-like sequences. Telomeric DNA-containing double minutes appear as two closely positioned dots in metaphase. tmpzr1t_l9r_go_relaxed.owl TDMs formation dph 2016-12-20T09:49:03Z biological_process owl:Class GO:0032478 biolink:NamedThing heterotetrameric decaprenyl diphosphate synthase complex A heterotetrameric complex located in the mitochondrial inner membrane that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis. In S. pombe it is a heterotetramer of Dlp1 and Dps1. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046101 biolink:NamedThing hypoxanthine biosynthetic process The chemical reactions and pathways resulting in the formation of hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate. tmpzr1t_l9r_go_relaxed.owl hypoxanthine synthesis|hypoxanthine biosynthesis|hypoxanthine formation|hypoxanthine anabolism biological_process owl:Class GO:0106245 biolink:NamedThing L-serine-phosphatidylethanolamine phosphatidyltransferase activity Catalysis of the reaction: L-1-phosphatidylethanolamine + L-serine <=> L-1-phosphatidylserine + ethanolamine. tmpzr1t_l9r_go_relaxed.owl RHEA:27606|EC:2.7.8.29 hjd 2020-01-22T15:27:57Z molecular_function owl:Class GO:0071304 biolink:NamedThing cellular response to vitamin B6 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B6 stimulus. Vitamin B6 encompasses pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:35:23Z biological_process owl:Class GO:0050508 biolink:NamedThing glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Catalysis of the reaction: beta-D-glucuronosyl-(1,4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan + UDP-N-acetyl-D-glucosamine = N-acetyl-alpha-D-glucosaminyl-(1,4)-beta-D-glucuronosyl-(1,4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl glucuronyl-N-acetylglucosaminylproteoglycan alpha-1,4-N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|alpha-N-acetylglucosaminyltransferase II activity|glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-a-N-acetylglucosaminyltransferase activity Reactome:R-HSA-2022851|RHEA:16213|Reactome:R-HSA-3656254|MetaCyc:2.4.1.224-RXN|Reactome:R-HSA-2022919|Reactome:R-HSA-9036283|Reactome:R-HSA-9036290|Reactome:R-HSA-3656261|EC:2.4.1.224 molecular_function owl:Class GO:0018846 biolink:NamedThing styrene-oxide isomerase activity Catalysis of the reaction: styrene oxide = phenylacetaldehyde. tmpzr1t_l9r_go_relaxed.owl styrene-oxide isomerase (epoxide-cleaving)|styrene oxide isomerase activity|SOI activity KEGG_REACTION:R02615|UM-BBD_reactionID:r0034|EC:5.3.99.7|RHEA:21604|MetaCyc:STYRENE-OXIDE-ISOMERASE-RXN molecular_function owl:Class GO:0102564 biolink:NamedThing aurachin C epoxide hydrolase/isomerase activity Catalysis of the reaction: aurachin C epoxide + H+ + NAD(P)H <=> aurachin B + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15030|RHEA:48728 molecular_function owl:Class GO:0048473 biolink:NamedThing D-methionine transport The directed movement of D-methionine into, out of, within, or between cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021672 biolink:NamedThing rhombomere 7 structural organization The process that contributes to creating the structural organization of rhombomere 7. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 7 structural organisation biological_process owl:Class GO:0031289 biolink:NamedThing actin phosphorylation The transfer of one or more phosphate groups to an actin molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042135 biolink:NamedThing neurotransmitter catabolic process The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell. tmpzr1t_l9r_go_relaxed.owl neurotransmitter catabolism|neurotransmitter breakdown|neurotransmitter degradation biological_process owl:Class GO:0018254 biolink:NamedThing peptidyl-tyrosine adenylylation The adenylylation of peptidyl-tyrosine to form peptidyl-O4'-(phospho-5'-adenosine)-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl peptidyl-tyrosine adenylation RESID:AA0203 biological_process owl:Class GO:0051434 biolink:NamedThing BH3 domain binding Binding to a BH3 protein domain, present in Bcl-2 family members. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902809 biolink:NamedThing regulation of skeletal muscle fiber differentiation Any process that modulates the frequency, rate or extent of skeletal muscle fiber differentiation. tmpzr1t_l9r_go_relaxed.owl mr 2014-03-26T21:18:26Z biological_process owl:Class GO:0060013 biolink:NamedThing righting reflex A reflex process in which an animal immediately tries to turn over after being placed in a supine position. tmpzr1t_l9r_go_relaxed.owl righting response biological_process owl:Class GO:0023003 biolink:NamedThing nuclear migration to the embryo sac center Migration of one of the four nuclei at each pole of the eight-nucleate embryo sac, to the center of the cell. tmpzr1t_l9r_go_relaxed.owl nuclear migration to the embryo sac centre|nucleus migration to the female gametophyte center|nucleus migration to the female gametophyte centre|nuclear migration to the megagametophyte center|nuclear migration to the female gametophyte center|nuclear migration to the female gametophyte centre|nuclear migration to the megagametophyte centre biological_process owl:Class GO:0060870 biolink:NamedThing cell wall disassembly involved in floral organ abscission A cellular process that results in the breakdown of the cell wall that contributes to the process of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T07:15:36Z biological_process owl:Class GO:0047282 biolink:NamedThing dTDP-dihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity Catalysis of the reaction: dTDP-L-dihydrostreptose + streptidine 6-phosphate = O-(1->4)-alpha-L-dihydrostreptosyl-streptidine 6-phosphate + dTDP + H(+). tmpzr1t_l9r_go_relaxed.owl dTDPdihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity|dTDP-L-dihydrostreptose:streptidine-6-phosphate dihydrostreptosyltransferase activity|thymidine diphosphodihydrostreptose-streptidine 6-phosphate dihydrostreptosyltransferase activity EC:2.4.2.27|KEGG_REACTION:R04222|RHEA:24392|MetaCyc:2.4.2.27-RXN molecular_function owl:Class GO:0071381 biolink:NamedThing cellular response to prostaglandin F stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin F stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:34:57Z biological_process owl:Class GO:0034652 biolink:NamedThing extrachromosomal circular DNA localization involved in cell aging A process in which extrachromosomal circular DNA molecules are transported to, or maintained in, a specific location in cells contributing to their aging. tmpzr1t_l9r_go_relaxed.owl extrachromosomal circular DNA localisation involved in cell aging|extrachromosomal circular DNA localization during cell ageing|extrachromosomal circular DNA localization during cell aging Note that the term string was changed to be consistent with placement of this term in cell aging hierarchy. biological_process owl:Class GO:0097295 biolink:NamedThing morphine biosynthetic process The chemical reactions and pathways resulting in the formation of morphine, 17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol. Morphine is a highly potent opiate analgesic psychoactive drug obtained form the opium poppy, Papaver somniferum. tmpzr1t_l9r_go_relaxed.owl morphine biosynthesis|morphine anabolism|morphine synthesis|morphine formation pr 2012-05-02T09:51:19Z biological_process owl:Class GO:1900942 biolink:NamedThing negative regulation of (Z)-nonadeca-1,14-diene biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of (Z)-nonadeca-1,14-diene biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of (Z)-nonadeca-1,14-diene synthesis|negative regulation of (Z)-nonadeca-1,14-diene anabolism|inhibition of (Z)-nonadeca-1,14-diene anabolism|downregulation of (Z)-nonadeca-1,14-diene formation|negative regulation of (Z)-nonadeca-1,14-diene synthesis|inhibition of (Z)-nonadeca-1,14-diene biosynthesis|downregulation of (Z)-nonadeca-1,14-diene biosynthetic process|down regulation of (Z)-nonadeca-1,14-diene anabolism|down regulation of (Z)-nonadeca-1,14-diene biosynthetic process|down-regulation of (Z)-nonadeca-1,14-diene biosynthesis|down-regulation of (Z)-nonadeca-1,14-diene anabolism|down-regulation of (Z)-nonadeca-1,14-diene synthesis|inhibition of (Z)-nonadeca-1,14-diene synthesis|inhibition of (Z)-nonadeca-1,14-diene formation|negative regulation of (Z)-nonadeca-1,14-diene biosynthesis|down-regulation of (Z)-nonadeca-1,14-diene biosynthetic process|negative regulation of (Z)-nonadeca-1,14-diene formation|down-regulation of (Z)-nonadeca-1,14-diene formation|inhibition of (Z)-nonadeca-1,14-diene biosynthetic process|downregulation of (Z)-nonadeca-1,14-diene biosynthesis|down regulation of (Z)-nonadeca-1,14-diene formation|downregulation of (Z)-nonadeca-1,14-diene anabolism|downregulation of (Z)-nonadeca-1,14-diene synthesis|down regulation of (Z)-nonadeca-1,14-diene biosynthesis tt 2012-06-14T03:17:54Z biological_process owl:Class GO:0016990 biolink:NamedThing arginine deiminase activity Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3. tmpzr1t_l9r_go_relaxed.owl L-arginine deiminase activity|citrulline iminase activity|L-arginine iminohydrolase activity|arginine dihydrolase activity RHEA:19597|MetaCyc:ARGININE-DEIMINASE-RXN|EC:3.5.3.6 molecular_function owl:Class GO:0034886 biolink:NamedThing gamma-aminovinylacetate deaminase activity Catalysis of the reaction: gamma-aminovinylacetate + H2O = succinic semialdehyde + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.99.-|UM-BBD_reactionID:r1351 molecular_function owl:Class GO:0003112 biolink:NamedThing positive regulation of heart rate by neuronal epinephrine The process in which the secretion of epinephrine from nerve endings increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart rate by neuronal adrenaline biological_process owl:Class GO:0044816 biolink:NamedThing Nsk1-Dlc1 complex A dimer of Nsk1 (nucleolus spindle kinetochore 1) and the dynein light chain, Dlc1. The dimers form an oligomeric chain structure. Functions in the regulation of kinetochore-microtubule interactions and chromosome segregation. tmpzr1t_l9r_go_relaxed.owl jl 2013-10-21T14:38:16Z cellular_component owl:Class GO:0033221 biolink:NamedThing ATPase-coupled urea transmembrane transporter activity Catalysis of the reaction: ATP + H2O + urea(out) = ADP + phosphate + urea(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent urea transmembrane transporter activity|carbamide-transporting ATPase activity|urea-transporting ATPase activity RHEA:32803 molecular_function owl:Class GO:0047403 biolink:NamedThing lacto-N-biosidase activity Catalysis of the reaction: H2O + beta-D-Gal-(1,3)-beta-D-GlcNAc-(1,3)-beta-D-Gal-(1,4)-D-Glc = beta-D-Gal-(1,4)-D-Glc + beta-D-Gal-(1,3)-D-GlcNAc. tmpzr1t_l9r_go_relaxed.owl oligosaccharide lacto-N-biosylhydrolase activity EC:3.2.1.140|RHEA:21568 molecular_function owl:Class GO:0003712 biolink:NamedThing transcription coregulator activity A transcription regulator activity that modulates the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcriptional cofactor activity|transcription cofactor activity|transcriptional co-regulator https://github.com/geneontology/go-ontology/issues/20464|https://github.com/geneontology/go-ontology/issues/15998|https://github.com/geneontology/go-ontology/issues/15665|https://github.com/geneontology/go-ontology/issues/20962|https://github.com/geneontology/go-ontology/issues/20862|https://github.com/geneontology/go-ontology/issues/20253|https://github.com/geneontology/go-ontology/issues/15536 Usage guidance: Most transcription coregulators do not bind DNA. Those that do usually bind DNA either in a non-specific or non-direct manner. If a protein binds DNA specifically, consider annotating to GO:0003700 DNA binding transcription factor activity. krc 2010-11-24T03:02:15Z GO:0016455|GO:0001104 molecular_function owl:Class GO:0047074 biolink:NamedThing 4-hydroxycatechol 1,2-dioxygenase activity Catalysis of the reaction: O2 + benzene-1,2,4-triol = maleylacetate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R308-RXN|MetaCyc:RXN-10137|RHEA:35595|EC:1.13.11.37 molecular_function owl:Class GO:0034189 biolink:NamedThing very-low-density lipoprotein particle binding Binding to a very-low-density lipoprotein particle, a triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. tmpzr1t_l9r_go_relaxed.owl VLDL binding|very-low-density lipoprotein binding molecular_function owl:Class GO:0003941 biolink:NamedThing L-serine ammonia-lyase activity Catalysis of the reaction: L-serine = pyruvate + NH3. tmpzr1t_l9r_go_relaxed.owl L-hydroxyaminoacid dehydratase activity|L-serine deaminase activity|L-serine dehydratase activity|L-serine ammonia-lyase (pyruvate-forming) activity|L-serine hydro-lyase (deaminating) activity|L-serine dehydration activity|serine deaminase activity MetaCyc:4.3.1.17-RXN|EC:4.3.1.17|RHEA:19169 Note that this function was formerly EC:4.3.1.13. molecular_function owl:Class GO:0080160 biolink:NamedThing selenate transport The directed movement of selenate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-01T04:17:38Z biological_process owl:Class GO:0097258 biolink:NamedThing 20-hydroxy-leukotriene B4 omega oxidase activity Catalysis of the reaction: 20-hydroxy-leukotriene B4 + O2 + reduced [NADPH-hemoprotein reductase] = 20-oxo-leukotriene B4 + H+ + 2 H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl 20-hydroxy-leukotriene B4 omega-oxidase activity|20-hydroxy-leukotriene B4 omega-oxidation Reactome:R-HSA-2161745|RHEA:48668 pr 2012-03-07T03:37:53Z molecular_function owl:Class GO:0062041 biolink:NamedThing positive regulation of meiotic sister chromatid arm separation Any process that increases the rate or exent of meiotic sister chromatid arm separation, the cell cycle process in which sister chromatid arms are physically detached from each other during meiosis. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-04T18:20:28Z biological_process owl:Class GO:0019623 biolink:NamedThing atrazine catabolic process to urea The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into urea. tmpzr1t_l9r_go_relaxed.owl atrazine breakdown to urea|atrazine degradation to urea biological_process owl:Class GO:0043821 biolink:NamedThing propionyl-CoA:succinate CoA-transferase activity Catalysis of the reaction: succinate + propionyl-CoA = succinyl-CoA + propionate. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA:succinate CoA transferase activity|propionyl-CoA succinate CoA-transferase activity RHEA:28010|MetaCyc:RXN0-268 molecular_function owl:Class GO:1905636 biolink:NamedThing positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding. tmpzr1t_l9r_go_relaxed.owl up regulation of RNA polymerase II regulatory region sequence-specific DNA binding|activation of RNA polymerase II regulatory region sequence-specific DNA binding|upregulation of RNA polymerase II regulatory region sequence-specific DNA binding|up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding bc 2016-11-03T12:03:07Z biological_process owl:Class GO:0099574 biolink:NamedThing regulation of protein catabolic process at synapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating protein degradation at the synapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0098608 biolink:NamedThing methylselenol demethylase activity Catalysis of the reaction: methylselenol + H2O => H2Se + CH3OH. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408530 dos 2014-04-16T11:28:00Z molecular_function owl:Class GO:1901140 biolink:NamedThing p-coumaryl alcohol transport The directed movement of a p-coumaryl alcohol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl 4-hydroxycinnamyl alcohol transport tb 2012-07-12T09:46:16Z biological_process owl:Class GO:0034018 biolink:NamedThing ascopyrone tautomerase activity Catalysis of the reaction: 1,5-anhydro-4-deoxy-D-glycero-hex-3-en-2-ulose = 1,5-anhydro-4-deoxy-D-glycero-hex-1-en-3-ulose. tmpzr1t_l9r_go_relaxed.owl APTM|1,5-anhydro-D-glycero-hex-3-en-2-ulose delta3-delta1-isomerase activity|ascopyrone P tautomerase activity|1,5-anhydro-D-glycero-hex-3-en-2-ulose tautomerase activity|APM tautomerase activity|ascopyrone isomerase activity|ascopyrone intramolecular oxidoreductase activity MetaCyc:5.3.3.15-RXN|RHEA:22568|EC:5.3.2.7 molecular_function owl:Class GO:0031741 biolink:NamedThing type B gastrin/cholecystokinin receptor binding Binding to a type B gastrin/cholecystokinin receptor. tmpzr1t_l9r_go_relaxed.owl type B gastrin/cholecystokinin receptor ligand molecular_function owl:Class GO:0047002 biolink:NamedThing L-arabinitol 2-dehydrogenase activity Catalysis of the reaction: L-arabinitol + NAD(+) = L-ribulose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-arabinitol 2-dehydrogenase (ribulose forming) activity MetaCyc:1.1.1.13-RXN|EC:1.1.1.13|KEGG_REACTION:R02441|RHEA:21356 molecular_function owl:Class GO:1900130 biolink:NamedThing regulation of lipid binding Any process that modulates the frequency, rate or extent of lipid binding. tmpzr1t_l9r_go_relaxed.owl pm 2012-02-23T04:05:03Z biological_process owl:Class GO:0004755 biolink:NamedThing saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity Catalysis of the reaction: L-saccharopine + H(2)O + NADP(+) = L-allysine + L-glutamate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl aminoadipic semialdehyde-glutamate reductase activity|saccharopine reductase activity|aminoadipic semialdehyde-glutamic reductase activity|saccharopine (nicotinamide adenine dinucleotide phosphate, glutamate-forming) dehydrogenase activity|aminoadipate semialdehyde-glutamate reductase activity|epsilon-N-(L-glutaryl-2)-L-lysine:NAD+(P) oxidoreductase (L-2-aminoadipate-semialdehyde forming)|N6-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-glutamate-forming)|6-N-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-glutamate-forming) MetaCyc:RXN3O-127|RHEA:10020|EC:1.5.1.10|KEGG_REACTION:R02315 molecular_function owl:Class GO:0039661 biolink:NamedThing host organelle outer membrane The outer, i.e. cytoplasm-facing in a cellular organelle, lipid bilayer of an organelle envelope, occurring in a host cell. tmpzr1t_l9r_go_relaxed.owl bf 2013-08-25T10:44:43Z cellular_component owl:Class GO:0098841 biolink:NamedThing protein localization to cell division site after cytokinesis A cellular protein localization process in which a protein is transported to, or maintained at, the site of cell division following cytokinesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042151 biolink:NamedThing nematocyst An organelle found in cnidoblast (nematoblast) cells. When matured, these stinging organelles store toxins and can deliver them when the cnidocil (a short extension of the cnidocyst) is stimulated by a prey or another stimulus. tmpzr1t_l9r_go_relaxed.owl cnidocyst Wikipedia:Cnidocyte cellular_component owl:Class GO:0036485 biolink:NamedThing dorsolateral trunk neural crest cell migration The movement of trunk neural crest cells from the neural tube, travelling dorso-laterally into the ectoderm and continuing toward the ventral midline of the belly. These migrating trunk neural crest cells become melanocytes, the melanin-forming pigment cells. tmpzr1t_l9r_go_relaxed.owl dorsolateral trunk NCC migration bf 2014-08-26T15:29:04Z biological_process owl:Class GO:0016608 biolink:NamedThing growth hormone-releasing hormone activity The action characteristic of growth hormone-releasing hormone, any of a family of peptide hormones that act on the anterior pituitary to stimulate the secretion of growth hormone and exert a trophic effect on the gland. tmpzr1t_l9r_go_relaxed.owl GHRH activity|GHRF activity molecular_function owl:Class GO:0019602 biolink:NamedThing toluene oxidation via 3-hydroxytoluene The degradation of toluene to form pyruvate and acetaldehyde; the first step in the pathway is the oxidation of toluene to form 3-hydroxytoluene (m-cresol). tmpzr1t_l9r_go_relaxed.owl MetaCyc:TOLUENE-DEG-3-OH-PWY biological_process owl:Class GO:0071618 biolink:NamedThing lysophosphatidylethanolamine acyltransferase activity Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-08T04:59:07Z molecular_function owl:Class GO:0042544 biolink:NamedThing melibiose biosynthetic process The chemical reactions and pathways resulting in the formation of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose. tmpzr1t_l9r_go_relaxed.owl melibiose formation|melibiose synthesis|melibiose biosynthesis|melibiose anabolism biological_process owl:Class GO:1901431 biolink:NamedThing regulation of response to cycloalkane Any process that modulates the frequency, rate or extent of response to cycloalkane. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T21:01:58Z biological_process owl:Class GO:0044399 biolink:NamedThing multi-species biofilm formation A process in which planktonically growing microorganisms of different species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription. tmpzr1t_l9r_go_relaxed.owl multi-species submerged biofilm formation|multi-species surface biofilm formation|multi-species biofilm formation in or on host organism|multi-species biofilm formation on inanimate substrate GO:0090607|GO:0090608|GO:0044400|GO:0044401 biological_process owl:Class GO:0047149 biolink:NamedThing thetin-homocysteine S-methyltransferase activity Catalysis of the reaction: L-homocysteine + dimethylsulfonioacetate = (methylthio)acetate + L-methionine + H(+). tmpzr1t_l9r_go_relaxed.owl dimethylsulfonioacetate:L-homocysteine S-methyltransferase activity|dimethylthetin-homocysteine methyltransferase activity|thetin-homocysteine methylpherase activity RHEA:22788|EC:2.1.1.3|KEGG_REACTION:R04153|MetaCyc:2.1.1.3-RXN molecular_function owl:Class GO:0018803 biolink:NamedThing 4-(2-carboxyphenyl)-2-oxobut-3-enoate aldolase activity Catalysis of the reaction: (3E)-4-(2-carboxyphenyl)-2-oxobut-3-enoate = 2-carboxybenzaldehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl trans-2'-carboxybenzalpyruvate hydratase-aldolase activity|(3Z)-4-(2-carboxyphenyl)-2-oxobut-3-enoate 2-carboxybenzaldehyde-lyase (pyruvate-forming)|2'-carboxybenzalpyruvate aldolase activity|(3Z)-4-(2-carboxyphenyl)-2-oxobut-3-enoate 2-carboxybenzaldehyde-lyase activity|(3E)-4-(2-carboxyphenyl)-2-oxobut-3-enoate 2-carboxybenzaldehyde-lyase activity RHEA:16453|EC:4.1.2.34|UM-BBD_reactionID:r0487|MetaCyc:4.1.2.34-RXN molecular_function owl:Class GO:0021643 biolink:NamedThing vagus nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the vagus nerve to attain its fully functional state. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis. tmpzr1t_l9r_go_relaxed.owl CN X maturation biological_process owl:Class GO:0007139 biolink:NamedThing meiotic telophase II The cell cycle phase which follows anaphase II of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0014810 biolink:NamedThing positive regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion Any process that activates, maintains or increases the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902629 biolink:NamedThing regulation of mRNA stability involved in cellular response to UV Any regulation of mRNA stability that is involved in cellular response to UV. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA stability involved in cellular response to ultraviolet radiation stimulus|regulation of mRNA stability involved in cellular response to UV radiation stimulus|regulation of mRNA stability involved in cellular response to UV light stimulus|regulation of mRNA stability involved in cellular response to ultraviolet light stimulus mah 2014-01-17T12:23:38Z biological_process owl:Class GO:0006583 biolink:NamedThing melanin biosynthetic process from tyrosine The chemical reactions and pathways resulting in the formation of melanin from other compounds, including tyrosine. tmpzr1t_l9r_go_relaxed.owl melanin synthesis from tyrosine|melanin formation from tyrosine|melanin anabolism from tyrosine biological_process owl:Class GO:0102074 biolink:NamedThing OPC6-trans-2-enoyl-CoA hydratase activity Catalysis of the reaction: OPC6-3-hydroxyacyl-CoA <=> OPC6-trans-2-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10704 molecular_function owl:Class GO:0045243 biolink:NamedThing cytosolic isocitrate dehydrogenase complex (NAD+) Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity. tmpzr1t_l9r_go_relaxed.owl isocitrate dehydrogenase complex (NAD+) cellular_component owl:Class GO:0045242 biolink:NamedThing isocitrate dehydrogenase complex (NAD+) Complex that possesses isocitrate dehydrogenase (NAD+) activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901182 biolink:NamedThing regulation of camalexin biosynthetic process Any process that modulates the frequency, rate or extent of camalexin biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of camalexin synthesis|regulation of camalexin biosynthesis|regulation of camalexin anabolism|regulation of camalexin formation tb 2012-07-23T02:16:52Z biological_process owl:Class GO:0050365 biolink:NamedThing tryptophanamidase activity Catalysis of the reaction: L-tryptophanamide + H(2)O = L-tryptophan + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-tryptophanamide amidohydrolase activity|L-tryptophan aminopeptidase|tryptophan aminopeptidase KEGG_REACTION:R00682|MetaCyc:TRYPTOPHANAMIDASE-RXN|EC:3.5.1.57|RHEA:11012 molecular_function owl:Class GO:0050342 biolink:NamedThing tocopherol O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + gamma-tocopherol = S-adenosyl-L-homocysteine + alpha-tocopherol. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:gamma-tocopherol 5-O-methyltransferase activity|gamma-tocopherol methyltransferase activity EC:2.1.1.95|MetaCyc:TOCOPHEROL-O-METHYLTRANSFERASE-RXN|RHEA:24012 molecular_function owl:Class GO:0102085 biolink:NamedThing N-(4-aminobenzoyl)-L-glutamate synthetase activity Catalysis of the reaction: 4-aminobenzoate + L-glutamate + ATP <=> H+ + p-aminobenzoyl glutamate + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10884 molecular_function owl:Class GO:0001096 biolink:NamedThing TFIIF-class transcription factor complex binding Binding to a general RNA polymerase II transcription factor belonging to the TFIIF complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl TFIIF-class transcription factor binding krc 2010-10-28T02:51:20Z molecular_function owl:Class GO:0070523 biolink:NamedThing 11-beta-hydroxysteroid dehydrogenase (NAD+) activity Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD+ = an 11-oxosteroid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21915 Wikipedia:11beta-hydroxysteroid_dehydrogenase|RHEA:53116 molecular_function owl:Class GO:0003845 biolink:NamedThing 11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H(+). tmpzr1t_l9r_go_relaxed.owl 11beta-hydroxysteroid dehydrogenase|11beta-hydroxy steroid dehydrogenase|corticosteroid 11-reductase|corticosteroid 11beta-dehydrogenase|beta-hydroxysteroid dehydrogenase https://github.com/geneontology/go-ontology/issues/21915 Reactome:R-HSA-194023|MetaCyc:11-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN|Wikipedia:11beta-hydroxysteroid_dehydrogenase molecular_function owl:Class GO:0008615 biolink:NamedThing pyridoxine biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. tmpzr1t_l9r_go_relaxed.owl pyridoxine biosynthesis|pyridoxine synthesis|pyridoxine formation|pyridoxine anabolism biological_process owl:Class GO:0072647 biolink:NamedThing interferon-epsilon production The appearance of interferon-epsilon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-epsilon production|interferon-epsilon secretion|IFNE production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072648 biological_process owl:Class GO:0050049 biolink:NamedThing leucine dehydrogenase activity Catalysis of the reaction: L-leucine + H2O + NAD+ = 4-methyl-2-oxopentanoate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl LeuDH activity|L-leucine:NAD+ oxidoreductase, deaminating|L-leucine:NAD+ oxidoreductase (deaminating)|L-leucine dehydrogenase activity MetaCyc:LEUCINE-DEHYDROGENASE-RXN|EC:1.4.1.9|RHEA:12220 molecular_function owl:Class GO:0050340 biolink:NamedThing thymidylate 5'-phosphatase activity Catalysis of the reaction: thymidylate + H2O = thymidine + phosphate. tmpzr1t_l9r_go_relaxed.owl deoxythymidylic 5'-nucleotidase activity|thymidylate 5'-phosphohydrolase activity|thymidylate 5' phosphatase activity|deoxythymidylate 5'-nucleotidase activity|thymidylate nucleotidase activity|dTMPase activity|deoxythymidylate phosphohydrolase activity|thymidylate 5'-nucleotidase activity MetaCyc:THYMIDYLATE-5-PHOSPHATASE-RXN|EC:3.1.3.35|RHEA:11080 molecular_function owl:Class GO:1990779 biolink:NamedThing glycoprotein Ib-IX-V complex A transmembrane signalling receptor complex found exclusively on platelets. Involved in haemostasis and thrombosis where it aids blood coagulation. tmpzr1t_l9r_go_relaxed.owl GPIb-IX-V complex|CD42|GPIb-V-IX complex An example of this is GB1BA in human (P07359) in PMID:1730602 (inferred from direct assay). bhm 2015-06-23T11:22:12Z cellular_component owl:Class GO:0106097 biolink:NamedThing cellular response to ceramide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ceramide stimulus. tmpzr1t_l9r_go_relaxed.owl hjd 2018-02-12T19:52:55Z biological_process owl:Class GO:0047620 biolink:NamedThing acylglycerol kinase activity Catalysis of the reaction: ATP + acylglycerol = ADP + acyl-sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl monoglyceride kinase activity|sn-2-monoacylglycerol kinase activity|monoacylglycerol kinase activity|ATP:acylglycerol 3-phosphotransferase activity|monoacylglycerol kinase (phosphorylating)|MGK|monoglyceride phosphokinase activity EC:2.7.1.94|MetaCyc:ACYLGLYCEROL-KINASE-RXN|RHEA:19293|Reactome:R-HSA-5696074 molecular_function owl:Class GO:0102124 biolink:NamedThing gibberellin A12 16alpha,17 epoxidase activity Catalysis of the reaction: gibberellin A12 + O2 + H+ + NAD(P)H <=> 16alpha, 17-epoxy gibberellin A12 + H2O + NAD(P). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11387 molecular_function owl:Class GO:0034972 biolink:NamedThing histone H3-R26 methylation The modification of histone H3 by addition of a methyl group to arginine at position 26 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H3 R26 methylation|histone H3 R26 methylation|histone H3R26me biological_process owl:Class GO:1901813 biolink:NamedThing astaxanthin metabolic process The chemical reactions and pathways involving astaxanthin. tmpzr1t_l9r_go_relaxed.owl astaxanthin metabolism yaf 2013-01-22T10:36:59Z biological_process owl:Class GO:0070418 biolink:NamedThing DNA-dependent protein kinase complex A protein complex that is involved in the repair of DNA double-strand breaks and, in mammals, V(D)J recombination events. It consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs) and the DNA end-binding heterodimer Ku. tmpzr1t_l9r_go_relaxed.owl DNA-PK-Ku antigen complex|DNA-PK complex|DNA-dependent protein kinase, DNA-end-binding complex cellular_component owl:Class GO:0033826 biolink:NamedThing xyloglucan 4-glucosyltransferase activity Catalysis of the transfer of a beta-D-glucosyl residue from UDP-glucose on to a glucose residue in xyloglucan, forming a beta-1,4-D-glucosyl-D-glucose linkage. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:xyloglucan 1,4-beta-D-glucosyltransferase activity|uridine diphosphoglucose-xyloglucan 4beta-glucosyltransferase activity|xyloglucan glucosyltransferase activity|xyloglucan 4beta-D-glucosyltransferase activity|UDPglucose:xyloglucan 1,4-beta-D-glucosyltransferase activity MetaCyc:2.4.1.168-RXN|EC:2.4.1.168 molecular_function owl:Class GO:0019198 biolink:NamedThing transmembrane receptor protein phosphatase activity Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0150092 biolink:NamedThing regulation of synaptic scaling A process that modulates synaptic scaling. Synaptic scaling is a form of synaptic plasticity, which entails uniform adjustments in the strength of all synapses on a cell in response to prolonged changes in the electrical activity of the cell. tmpzr1t_l9r_go_relaxed.owl regulation of homeostatic synaptic scaling|homeostatic synaptic scaling bc 2018-08-09T16:27:28Z biological_process owl:Class GO:0050213 biolink:NamedThing progesterone 5-alpha-reductase activity Catalysis of the reaction: 5-alpha-pregnan-3,20-dione + NADP+ = progesterone + NADPH. tmpzr1t_l9r_go_relaxed.owl delta4-steroid 5alpha-reductase (progesterone)|progesterone 5a-reductase activity|progesterone 5alpha-reductase activity|5alpha-pregnan-3,20-dione:NADP+ 5-oxidoreductase activity|steroid 5-alpha-reductase activity EC:1.3.1.30|MetaCyc:PROGESTERONE-5-ALPHA-REDUCTASE-RXN|RHEA:21952 molecular_function owl:Class GO:0050186 biolink:NamedThing phosphoadenylylsulfatase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + H2O = adenosine 3',5'-bisphosphate + sulfate. tmpzr1t_l9r_go_relaxed.owl 3-phosphoadenosine 5-phosphosulfate sulfatase activity|phosphoadenylylsulphatase activity|3-phosphoadenylyl sulfatase activity|PAPS sulfatase activity|3'-phosphoadenylylsulfate sulfohydrolase activity MetaCyc:PHOSPHOADENYLYLSULFATASE-RXN|RHEA:11232|EC:3.6.2.2 molecular_function owl:Class GO:0097714 biolink:NamedThing response to viscosity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a viscosity stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2016-08-23T14:32:46Z biological_process owl:Class GO:0052730 biolink:NamedThing sarcosine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + sarcosine = S-adenosyl-L-homocysteine + N,N-dimethylglycine. tmpzr1t_l9r_go_relaxed.owl SDMT|S-adenosyl-L-methionine:N,N-sarcosine N-methyltransferase activity RHEA:15453|EC:2.1.1.162|EC:2.1.1.156|MetaCyc:RXN-9679|EC:2.1.1.157|MetaCyc:RXN-7042|KEGG_REACTION:R07243|MetaCyc:R481-RXN ai 2011-08-16T03:45:39Z molecular_function owl:Class GO:0010742 biolink:NamedThing macrophage derived foam cell differentiation The process in which a monocyte acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070699 biolink:NamedThing type II activin receptor binding Binding to a type II activin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-04T04:16:26Z molecular_function owl:Class GO:2000566 biolink:NamedThing positive regulation of CD8-positive, alpha-beta T cell proliferation Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation. tmpzr1t_l9r_go_relaxed.owl ebc 2011-04-03T09:03:24Z biological_process owl:Class GO:0103092 biolink:NamedThing methylthioalkylmalate isomerase activity Catalysis of the reaction: 2-(7'-methylthio)heptylmalate <=> 3-(7'-methylthio)heptylmalate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4176 molecular_function owl:Class GO:0019389 biolink:NamedThing glucuronoside metabolic process The chemical reactions and pathways involving glucuronosides, any compound formed by combination in glycosidic linkage of a hydroxy compound with the anomeric carbon atom of a glucuronate. tmpzr1t_l9r_go_relaxed.owl glucuronoside metabolism|glucuronide metabolic process|glucuronide metabolism biological_process owl:Class GO:0010307 biolink:NamedThing acetylglutamate kinase regulator activity Modulates the enzyme activity of acetylglutamate kinase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044850 biolink:NamedThing menstrual cycle A type of ovulation cycle where the endometrium is shed if pregnancy does not occur. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Menstrual_cycle jl 2014-07-16T13:51:29Z biological_process owl:Class GO:0097547 biolink:NamedThing synaptic vesicle protein transport vesicle A cytoplasmic vesicle composed of both tubulovesicular and clear core vesicles that transport synaptic vesicle-associated proteins. Proteins carried by synaptic vesicle protein transport vesicles (STVs) include synaptophysin, synapsin Ia, synaptotagmin and synaptobrevin/vesicle-associated membrane protein 2 (VAMP2). STVs are packaged via the trans-Golgi network before being transported through the axon. tmpzr1t_l9r_go_relaxed.owl STV This term should not be confused with GO:0008021 'synaptic vesicle'. STVs and synaptic vesicles differ both functionally and morphologically. Functionally, STVs are transport vesicles that deliver synaptic vesicle proteins to synapses, while synaptic vesicles are responsible for transmitter release at synapses. Morphologically, synaptic vesicles are very homogeneous, while STVs are very heterogeneous in size and shape. STVs might be a precursor for synaptic vesicles. pr 2013-12-20T09:22:03Z cellular_component owl:Class GO:0008154 biolink:NamedThing actin polymerization or depolymerization Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030240 biolink:NamedThing skeletal muscle thin filament assembly The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061843 biolink:NamedThing Sertoli cell barrier remodeling The tissue remodeling process by which the Sertoli cell barrier is temporarily disrupted and reorganized to accommodate the transit of preleptotene spermatocytes at stage VIII of the epithelial cycle. tmpzr1t_l9r_go_relaxed.owl blood testis barrier restructuring|restructuring of blood-testis barrier|restructuring of BTB|Sertoli cell barrier restructuring|restructuring of SCB|SCB remodeling biological_process owl:Class GO:0099035 biolink:NamedThing anchored component of spine apparatus membrane The component of the spine apparatus membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102637 biolink:NamedThing 5-aminolevulinate-CoA ligase activity Catalysis of the reaction: 5-ammoniolevulinate + coenzyme A + ATP <=> 5-aminolevulinyl-CoA + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15714 molecular_function owl:Class GO:0047217 biolink:NamedThing sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase activity Catalysis of the reaction: sucrose + 1,6-alpha-D-glucosyl(n) = 1,6-alpha-D-glucosyl(n+1) + fructose. tmpzr1t_l9r_go_relaxed.owl GTF-S|sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase activity|sucrose:1,6-, 1,3-alpha-D-glucan 3-alpha- and 6-alpha-D-glucosyltransferase|sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase activity|water-soluble-glucan synthase activity MetaCyc:2.4.1.125-RXN|EC:2.4.1.125 molecular_function owl:Class GO:0102804 biolink:NamedThing oripavine 6-O-demethylase activity Catalysis of the reaction: oripavine + 2-oxoglutarate + O2 <=> morphinone + formaldehyde + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8151|EC:1.14.11.31 molecular_function owl:Class GO:0033938 biolink:NamedThing 1,6-alpha-L-fucosidase activity Catalysis of the hydrolysis of (1->6) linkages between alpha-L-fucose and N-acetyl-D-glucosamine in glycopeptides such as immunoglobulin G glycopeptide and fucosyl-asialo-agalacto-fetuin. tmpzr1t_l9r_go_relaxed.owl 1,6-L-fucosyl-N-acetyl-D-glucosaminylglycopeptide fucohydrolase activity MetaCyc:3.2.1.127-RXN|EC:3.2.1.127 molecular_function owl:Class GO:1903142 biolink:NamedThing positive regulation of establishment of endothelial barrier Any process that activates or increases the frequency, rate or extent of establishment of endothelial barrier. tmpzr1t_l9r_go_relaxed.owl up-regulation of establishment of endothelial barrier|up regulation of establishment of endothelial barrier|upregulation of establishment of endothelial barrier|activation of establishment of endothelial barrier als 2014-07-01T12:12:52Z biological_process owl:Class GO:1901552 biolink:NamedThing positive regulation of endothelial cell development Any process that activates or increases the frequency, rate or extent of endothelial cell development. tmpzr1t_l9r_go_relaxed.owl upregulation of endothelial cell development|activation of endothelial cell development|up regulation of endothelial cell development|up-regulation of endothelial cell development pr 2012-10-30T12:59:58Z biological_process owl:Class GO:0034980 biolink:NamedThing FHL2-CREB complex A protein complex that contains CREB and FHL2, and is involved in transcriptional regulation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019333 biolink:NamedThing denitrification pathway The reduction of nitrate to dinitrogen by four reactions; each intermediate is transformed to the next lower oxidation state; also part of cellular bioenergetics; the nitrogen compounds can serve as terminal acceptors for electron transport phosphorylation in place of oxygen. tmpzr1t_l9r_go_relaxed.owl MetaCyc:DENITRIFICATION-PWY biological_process owl:Class GO:0070334 biolink:NamedThing alpha6-beta4 integrin-laminin 5 complex A protein complex that consists of an alpha6-beta4 integrin complex bound to laminin 5. tmpzr1t_l9r_go_relaxed.owl alpha6-beta4 integrin-laminin-332 complex|ITGA6-ITGB4-LAMA5 complex cellular_component owl:Class GO:0061735 biolink:NamedThing DNM1L-mediated stimulation of mitophagy in response to mitochondrial depolarization A positive regulation of the macromitophagy pathway that is triggered by mitochondrial depolarization and requires the function of a DNM1L-family molecule. tmpzr1t_l9r_go_relaxed.owl dynamin-like protein-mediated stimulation of mitophagy in response to mitochondrial depolarization dph 2015-09-14T14:00:43Z biological_process owl:Class GO:0018001 biolink:NamedThing N-terminal peptidyl-valine acetylation The acetylation of the N-terminal tyrosine of proteins to form the derivative N-acetyl-L-valine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0054 biological_process owl:Class GO:0071401 biolink:NamedThing cellular response to triglyceride Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triglyceride stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to triacylglyceride|cellular response to triacylglycerol mah 2009-12-11T04:40:56Z biological_process owl:Class GO:0047977 biolink:NamedThing hepoxilin-epoxide hydrolase activity Catalysis of the reaction: (5Z,9E,14Z)-(8x,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate + H2O = (5Z,9E,14Z)-(8x,11x,12S)-8,11,12-trihydroxyicosa-5,9,14-trienoate. tmpzr1t_l9r_go_relaxed.owl (5Z,9E,14Z)-(8xi,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate hydrolase activity|hepoxilin A3 hydrolase activity|hepoxilin epoxide hydrolase activity|hepoxilin A(3) hydrolase activity|hepoxylin hydrolase activity MetaCyc:HEPOXILIN-EPOXIDE-HYDROLASE-RXN|RHEA:16665|Reactome:R-HSA-2161949|EC:3.3.2.7 molecular_function owl:Class GO:2001043 biolink:NamedThing positive regulation of septum digestion after cytokinesis Any process that activates or increases the frequency, rate or extent of the process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell separation after cytokinesis|positive regulation of cytokinetic cell separation mcc 2011-08-30T05:16:57Z biological_process owl:Class GO:0004515 biolink:NamedThing nicotinate-nucleotide adenylyltransferase activity Catalysis of the reaction: ATP + nicotinate ribonucleotide = diphosphate + deamido-NAD+. tmpzr1t_l9r_go_relaxed.owl ATP:nicotinate-ribonucleotide adenylyltransferase activity|ATP:nicotinate-nucleotide adenylyltransferase activity|deamidonicotinamide adenine dinucleotide pyrophosphorylase activity|deamido-NAD+ pyrophosphorylase activity|nicotinate mononucleotide adenylyltransferase activity|nicotinic acid mononucleotide adenylyltransferase|deamido-NAD(+) diphosphorylase activity|deamido-NAD(+) pyrophosphorylase activity|NaMN-ATase activity Reactome:R-HSA-200512|EC:2.7.7.18|Reactome:R-HSA-197235|MetaCyc:NICONUCADENYLYLTRAN-RXN|RHEA:22860|Reactome:R-HSA-200474 molecular_function owl:Class GO:0048197 biolink:NamedThing Golgi membrane coat protein complex assembly The aggregation, arrangement and bonding together of priming complexes to form a coat on a Golgi membrane. Priming complexes associate laterally and additional coat proteins are recruited from the cytosol to the forming coat. Cargo proteins diffuse into the budding site and become trapped by their interactions with the coat. tmpzr1t_l9r_go_relaxed.owl dictyosome membrane binding by cytosolic coat proteins|dictyosome membrane bud coat oligomerisation|Golgi membrane bud coat oligomerisation biological_process owl:Class GO:0004876 biolink:NamedThing complement component C3a receptor activity Combining with the C3a product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl C3a anaphylatoxin receptor activity GO:0004943 molecular_function owl:Class GO:0102592 biolink:NamedThing delphinidin 7-O-(6-O-(4-O-(glucosyl)-oxybenzoyl)-glucoside) acyltransferase (acyl-glucose dependent activity Catalysis of the reaction: delphinidin 3-O-rutinoside-7-O-(6-O-(4-O-(glucosyl)-oxybenzoyl)-glucoside) + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> violdelphin + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15354 molecular_function owl:Class GO:0102660 biolink:NamedThing caffeoyl-CoA:shikimate O-(hydroxycinnamoyl)transferase activity Catalysis of the reaction: caffeoylshikimate + coenzyme A <=> caffeoyl-CoA + shikimate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2621 molecular_function owl:Class GO:0102634 biolink:NamedThing 1,3,6,8-tetrahydroxynaphthalene monooxygenase (quinone-forming) activity Catalysis of the reaction: naphthalene-1,3,6,8-tetrol + O2 <=> flaviolin-2-olate + H2O + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15586 molecular_function owl:Class GO:0019140 biolink:NamedThing inositol 3-kinase activity Catalysis of the reaction: ATP + myo-inositol = ADP + 1D-myo-inositol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl myoinositol kinase activity|myo-inositol 1-kinase activity|myo-inositol 3-kinase activity|inositol-1-kinase (phosphorylating)|inositol 1-kinase activity|ATP:myo-inositol 1-phosphotransferase activity EC:2.7.1.64|RHEA:21804|MetaCyc:MYO-INOSITOL-1-KINASE-RXN molecular_function owl:Class GO:0009276 biolink:NamedThing Gram-negative-bacterium-type cell wall The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain. tmpzr1t_l9r_go_relaxed.owl 1-2nm peptidoglycan-based cell wall|cell wall inner membrane cellular_component owl:Class GO:1903032 biolink:NamedThing negative regulation of microtubule plus-end binding Any process that stops, prevents or reduces the frequency, rate or extent of microtubule plus-end binding. tmpzr1t_l9r_go_relaxed.owl inhibition of microtubule plus-end binding|down regulation of microtubule plus-end binding|down-regulation of microtubule plus-end binding|downregulation of microtubule plus-end binding hjd 2014-05-16T18:38:32Z biological_process owl:Class GO:0034900 biolink:NamedThing 3-(N-formyl)-formiminopyruvate hydrolase activity Catalysis of the reaction: 3-(N-formyl)-formiminopyruvate + H2O = 3-formiminopyruvate + formate. tmpzr1t_l9r_go_relaxed.owl EC:3.5.99.-|UM-BBD_reactionID:r1399 molecular_function owl:Class GO:0043908 biolink:NamedThing Ser(Gly)-tRNA(Ala) hydrolase activity Catalysis of the hydrolysis of misacylated Ser-tRNA(Ala) and Gly-tRNA(Ala). tmpzr1t_l9r_go_relaxed.owl Ser(Gly)-tRNAAla hydrolase activity EC:3.1.1.- molecular_function owl:Class GO:0072305 biolink:NamedThing negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis Any process that reduces the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the metanephros. tmpzr1t_l9r_go_relaxed.owl negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis mah 2010-04-09T05:03:41Z biological_process owl:Class GO:1904614 biolink:NamedThing response to biphenyl Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biphenyl stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-27T19:08:43Z biological_process owl:Class GO:0008899 biolink:NamedThing homoserine O-succinyltransferase activity Catalysis of the reaction: L-homoserine + succinyl-CoA = O-succinyl-L-homoserine + CoA. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA:L-homoserine O-succinyltransferase activity|homoserine succinyltransferase activity|homoserine O-transsuccinylase activity MetaCyc:HOMSUCTRAN-RXN|RHEA:22008|KEGG_REACTION:R01777|EC:2.3.1.46 molecular_function owl:Class GO:0034786 biolink:NamedThing 9-fluorenone-3,4-dioxygenase activity Catalysis of the reaction: 9-fluorenone + O2 + 2 H+ + 2 e- = 1-hydro-1,1a-dihydroxy-9-fluorenone. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1039 molecular_function owl:Class GO:0016528 biolink:NamedThing sarcoplasm The cytoplasm of a muscle cell; includes the sarcoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sarcoplasm cellular_component owl:Class GO:0016309 biolink:NamedThing 1-phosphatidylinositol-5-phosphate 4-kinase activity Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 5-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol-5-phosphate kinase|PIP4K|ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase activity|type II PIP kinase activity Reactome:R-HSA-1675776|MetaCyc:2.7.1.149-RXN|RHEA:12280|EC:2.7.1.149|Reactome:R-HSA-6811522 molecular_function owl:Class GO:0047412 biolink:NamedThing N-(long-chain-acyl)ethanolamine deacylase activity Catalysis of the reaction: H2O + N-(long-chain-acyl)ethanolamine = ethanolamine + a fatty acid. tmpzr1t_l9r_go_relaxed.owl acylethanolamine amidase activity|N-(long-chain-acyl)ethanolamine amidohydrolase activity|N-acylethanolamine amidohydrolase activity RHEA:17505|MetaCyc:3.5.1.60-RXN|EC:3.5.1.60 molecular_function owl:Class GO:0071749 biolink:NamedThing polymeric IgA immunoglobulin complex A protein complex composed of two, three, or four monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through disulfide binded monomers of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl pIgA1 antibody|polymeric IgA antibody|polymeric IgA1 antibody|pIgA antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Dimeric IgA is by far the most common form of polymeric IgA. In human only the IgA1 isotype is capable of a polymeric forms. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0003195 biolink:NamedThing tricuspid valve formation The developmental process pertaining to the initial formation of the tricuspid valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:14:40Z biological_process owl:Class GO:0102299 biolink:NamedThing linolenate 9R-lipoxygenase activity Catalysis of the reaction: alpha-linolenate + O2 <=> (9R,10E,12Z,15Z)-9-hydroperoxyoctadeca-10,12,15-trienoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.61|RHEA:31687|MetaCyc:RXN-12759 molecular_function owl:Class GO:0031914 biolink:NamedThing negative regulation of synaptic plasticity A process that decreases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers. tmpzr1t_l9r_go_relaxed.owl downregulation of synaptic plasticity|inhibition of synaptic plasticity|down regulation of synaptic plasticity|down-regulation of synaptic plasticity biological_process owl:Class GO:0010021 biolink:NamedThing amylopectin biosynthetic process The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages. tmpzr1t_l9r_go_relaxed.owl amylopectin formation|amylopectin synthesis|amylopectin biosynthesis|amylopectin anabolism biological_process owl:Class GO:0031316 biolink:NamedThing extrinsic component of nuclear outer membrane The component of a nuclear outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl extrinsic to nuclear outer membrane cellular_component owl:Class GO:0047892 biolink:NamedThing flavone apiosyltransferase activity Catalysis of the reaction: UDP-apiose + 7-O-beta-D-glucosyl-5,7,4'-trihydroxyflavone = UDP + 7-O-(beta-D-apiofuranosyl-1,2-beta-D-glucosyl)-5,7,4'-trihydroxyflavone. tmpzr1t_l9r_go_relaxed.owl UDP-apiose:5,4'-dihydroxyflavone 7-O-beta-D-glucoside 2''-O-beta-D-apiofuranosyltransferase activity|uridine diphosphoapiose-flavone apiosyltransferase activity|UDP-apiose:7-O-(beta-D-glucosyl)-flavone apiosyltransferase activity MetaCyc:FLAVONE-APIOSYLTRANSFERASE-RXN|RHEA:19153|EC:2.4.2.25 molecular_function owl:Class GO:0042794 biolink:NamedThing plastid rRNA transcription The synthesis of ribosomal RNA (rRNA) from a plastid DNA template, usually by a specific plastid RNA polymerase. tmpzr1t_l9r_go_relaxed.owl rRNA transcription from plastid promoter https://github.com/geneontology/go-ontology/issues/14854 biological_process owl:Class GO:0021967 biolink:NamedThing corticospinal neuron axon guidance through the cerebral cortex The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed from its cell body in layer V through the cerebral cortex in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through the cerebral cortex biological_process owl:Class GO:1990919 biolink:NamedThing proteasome-nuclear membrane anchor activity The binding activity of a molecule that brings together a proteasome complex and a nuclear inner membrane, to maintain the nuclear membrane localization of the proteasome. tmpzr1t_l9r_go_relaxed.owl nuclear membrane proteasome tether activity|nuclear membrane proteasome tether|nuclear membrane-proteasome anchor activity|tethering factor for nuclear proteasome|nuclear membrane-proteasome tether activity|nuclear membrane proteasome adaptor|nuclear membrane proteasome anchor https://github.com/geneontology/go-ontology/issues/19119 vw 2015-12-14T14:01:45Z molecular_function owl:Class GO:0002499 biolink:NamedThing proteolysis within endosome associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein by endosomal resident proteases contributing to antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl endosomal proteolysis associated with antigen processing and presentation biological_process owl:Class GO:0097333 biolink:NamedThing response to olanzapine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an olanzapine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:00:04Z biological_process owl:Class GO:0030474 biolink:NamedThing spindle pole body duplication Construction of a new spindle pole body. tmpzr1t_l9r_go_relaxed.owl spindle pole body duplication in cytoplasm|spindle pole body biogenesis|spindle pole body biosynthesis|spindle pole body replication|spindle pole body assembly|spindle pole body duplication associated with nuclear envelope|spindle pole body formation GO:0007103|GO:0031046 biological_process owl:Class GO:0031962 biolink:NamedThing mineralocorticoid receptor binding Binding to a mineralocorticoid receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120232 biolink:NamedThing prenyl-FMNH2 biosynthetic process The chemical reactions and pathways resulting in prenyl-FMNH2, an essential cofactor for the decarboxylase enzymes UbiD and Fdc1. tmpzr1t_l9r_go_relaxed.owl prenylated FMNH2 anabolism|prenyl-FMNH2 synthesis|prenylated FMNH2 biosynthetic process|prenyl-FMNH2 biosynthesis|prenylated FMNH2 formation|prenyl-FMNH2 anabolism|prenylated FMNH2 synthesis|prenyl-FMNH2 formation|prenylated FMNH2 biosynthesis https://github.com/geneontology/go-ontology/issues/19244 krc 2020-06-30T19:09:11Z biological_process owl:Class GO:1990964 biolink:NamedThing actin cytoskeleton-regulatory complex A protein complex probably required for the internalization of endosomes during actin-coupled endocytosis. Links the site of endocytosis to the cell membrane-associated actin cytoskeleton, coordinating ARP2/3 stimulation at the later stages of endocytosis. Present in the late endocytic coat. tmpzr1t_l9r_go_relaxed.owl An example of this is Pan1 in Saccharomyces cerevisiae (UniProt ID P32521) in PMID:10594004 (inferred from direct assay). bhm 2016-06-09T12:18:30Z cellular_component owl:Class GO:0047482 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase activity Catalysis of the reaction: L-lysine + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine synthetase activity|UPD-MurNAc-L-Ala-D-Glu:L-Lys ligase activity|MurE synthetase activity|uridine diphospho-N-acetylmuramoylalanyl-D-glutamyllysine synthetase activity|L-lysine-adding enzyme activity|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:L-lysine gamma-ligase (ADP-forming) EC:6.3.2.7|MetaCyc:6.3.2.7-RXN|RHEA:17969|KEGG_REACTION:R02786 molecular_function owl:Class GO:0072375 biolink:NamedThing medium-term memory The memory process that deals with the storage, retrieval and modification of information received at a time ago that is intermediate between that of short and long term memory (30min - 7hrs in Drosophila melanogaster). tmpzr1t_l9r_go_relaxed.owl MTM|middle-term memory mah 2010-11-22T11:26:54Z biological_process owl:Class GO:1903283 biolink:NamedThing negative regulation of glutathione peroxidase activity Any process that stops, prevents or reduces the frequency, rate or extent of glutathione peroxidase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of glutathione:hydrogen-peroxide oxidoreductase activity|down regulation of non-selenium glutathione peroxidase activity|down-regulation of glutathione peroxidase activity|down regulation of glutathione:hydrogen-peroxide oxidoreductase activity|downregulation of glutathione peroxidase activity|down regulation of selenium-glutathione peroxidase activity|down regulation of GSH peroxidase activity|down-regulation of selenium-glutathione peroxidase activity|down-regulation of non-selenium glutathione peroxidase activity|negative regulation of selenium-glutathione peroxidase activity|downregulation of reduced glutathione peroxidase activity|downregulation of non-selenium glutathione peroxidase activity|inhibition of selenium-glutathione peroxidase activity|inhibition of GSH peroxidase activity|downregulation of glutathione:hydrogen-peroxide oxidoreductase activity|negative regulation of reduced glutathione peroxidase activity|negative regulation of non-selenium glutathione peroxidase activity|down-regulation of GSH peroxidase activity|down-regulation of reduced glutathione peroxidase activity|inhibition of reduced glutathione peroxidase activity|down regulation of glutathione peroxidase activity|down regulation of reduced glutathione peroxidase activity|down-regulation of glutathione:hydrogen-peroxide oxidoreductase activity|negative regulation of GSH peroxidase activity|inhibition of non-selenium glutathione peroxidase activity|inhibition of glutathione:hydrogen-peroxide oxidoreductase activity|inhibition of glutathione peroxidase activity|downregulation of selenium-glutathione peroxidase activity|downregulation of GSH peroxidase activity bf 2014-08-11T13:14:22Z biological_process owl:Class GO:0061752 biolink:NamedThing telomeric repeat-containing RNA binding Binding to long non-coding RNA molecules transcribed from subtelomeric regions in most eukaryotes. Telomeric repeat-containing RNA (TERRA) molecules consist of subtelomeric-derived sequences and G-rich telomeric repeats. tmpzr1t_l9r_go_relaxed.owl TERRA binding dph 2015-11-13T07:55:06Z molecular_function owl:Class GO:0009186 biolink:NamedThing deoxyribonucleoside diphosphate metabolic process The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar. tmpzr1t_l9r_go_relaxed.owl deoxyribonucleoside diphosphate metabolism biological_process owl:Class GO:0045320 biolink:NamedThing chloroplast proton-transporting ATP synthase complex A proton-transporting ATP synthase complex found in the chloroplast thylakoid membrane; it catalyzes the phosphorylation of ADP to ATP during photo-phosphorylation. tmpzr1t_l9r_go_relaxed.owl chloroplast hydrogen-translocating F-type ATPase complex|hydrogen-translocating F-type ATPase complex|chloroplast proton-transporting F-type ATPase complex cellular_component owl:Class GO:0071754 biolink:NamedThing IgM immunoglobulin complex, circulating A polymer of five or six IgM core units each composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds; the individual IgM core units are held together via disulfide bonds with a single J chain polypeptide acting as a bridge between two of the polymeric units. Circulating IgM is present in the extracellular space, in mucosal areas or other tissues, or in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgM antibody Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0039660 biolink:NamedThing structural constituent of virion The action of a molecule that contributes to the structural integrity of a virion. tmpzr1t_l9r_go_relaxed.owl viral matrix protein bf 2013-07-22T16:43:41Z molecular_function owl:Class GO:0099112 biolink:NamedThing microtubule polymerization based protein transport The transport of a protein driven by polymerization of a microtubule to which it is attached. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048531 biolink:NamedThing beta-1,3-galactosyltransferase activity Catalysis of the transfer of a galactose residue from a donor molecule to an oligosaccharide, forming a beta-1,3-linkage. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036305 biolink:NamedThing ameloblast differentiation The process in which a relatively unspecialized cell acquires specialized features of an ameloblast, a cylindrical epithelial cell in the innermost layer of the enamel organ. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T13:49:15Z biological_process owl:Class GO:0036070 biolink:NamedThing light-independent bacteriochlorophyll biosynthetic process The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, which occur in the absence of light. Bacteriochlorophylls are any of the chlorophylls of photosynthetic bacteria; they differ structurally from the chlorophylls of higher plants. tmpzr1t_l9r_go_relaxed.owl light independent bacteriochlorophyll biosynthetic process|light-independent bacteriochlorophyll synthesis|light-independent bacteriochlorophyll formation|light-independent bacteriochlorophyll biosynthesis|light-independent bacteriochlorophyll anabolism bf 2011-12-15T04:46:25Z biological_process owl:Class GO:0017061 biolink:NamedThing S-methyl-5-thioadenosine phosphorylase activity Catalysis of the reaction: 5'-methylthioadenosine + phosphate = adenine + 5-methylthio-D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl MeSAdo phosphorylase activity|5'-deoxy-5'-methylthioadenosine phosphorylase activity|5'-methylthioadenosine:phosphate methylthio-D-ribosyl-transferase activity|methylthioadenosine phosphorylase activity|MTA phosphorylase activity|methylthioadenosine nucleoside phosphorylase activity|S-methyl-5-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase activity|MTAPase activity|5'-methylthioadenosine phosphorylase activity|MeSAdo/Ado phosphorylase activity MetaCyc:5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN|Reactome:R-HSA-1237160|EC:2.4.2.28|RHEA:11852 molecular_function owl:Class GO:0071835 biolink:NamedThing mating pheromone secretion involved in regulation of conjugation The regulated release of a mating pheromone, a peptide hormone that induces a behavioral or physiological response(s) from a responding organism or cell, that regulates the union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. tmpzr1t_l9r_go_relaxed.owl mating-type pheromone secretion involved in conjugation mah 2010-09-09T11:23:19Z biological_process owl:Class GO:0009346 biolink:NamedThing ATP-independent citrate lyase complex Citrate lyase is a multienzyme complex with three constituents: the alpha subunit, citrate-ACP transferase; the beta subunit, citryl-ACP lyase; and the gamma subunit, an acyl-carrier protein which also carries the prosthetic group components. All three subunits are required for citrate lyase enzyme activity. This enzyme has only been found in bacteria. tmpzr1t_l9r_go_relaxed.owl citrate synthase complex|citrate lyase complex https://github.com/geneontology/go-ontology/issues/21028 MetaCyc:ACECITLY-CPLX Note that this complex has only been found in bacteria. For eukaryotic cytrate lyases, consider GO:0140615 ; ATP-dependent citrate lyase complex. cellular_component owl:Class GO:0140031 biolink:NamedThing phosphorylation-dependent protein binding Binding to a protein upon phosphorylation of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require phosphorylation of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of phosphorylation. It may be that the phosphorylation causes a conformational change that allows binding of the protein to another region; this type of phosphorylation-dependent protein binding is valid for annotation to this term. pg 2017-05-17T15:15:19Z molecular_function owl:Class GO:0044073 biolink:NamedThing modulation by symbiont of host translation The process in which a symbiont organism effects a change in translation, the chemical reactions and pathways resulting in the formation of a protein, in its host organism. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host translation|regulation by symbiont of host translation|modulation of host translation by symbiont biological_process owl:Class GO:0004168 biolink:NamedThing dolichol kinase activity Catalysis of the reaction: CTP + dolichol = CDP + dolichyl phosphate. tmpzr1t_l9r_go_relaxed.owl dolichol phosphokinase activity|CTP:dolichol O-phosphotransferase activity MetaCyc:DOLICHOL-KINASE-RXN|RHEA:13133|Reactome:R-HSA-4755600|EC:2.7.1.108|Reactome:R-HSA-446195 molecular_function owl:Class GO:0000159 biolink:NamedThing protein phosphatase type 2A complex A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. tmpzr1t_l9r_go_relaxed.owl PP2A-pi|PP2A complex|PP2a-protector|protein phosphatase 2 complex cellular_component owl:Class GO:1905542 biolink:NamedThing negative regulation of L-arginine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-arginine import across plasma membrane. tmpzr1t_l9r_go_relaxed.owl inhibition of L-arginine import into cell|negative regulation of L-arginine import into cell|downregulation of L-arginine import into cell|down regulation of L-arginine import into cell mah 2014-03-31T14:30:46Z GO:1902827 biological_process owl:Class GO:0007225 biolink:NamedThing patched ligand maturation The posttranslational modification of members of the Hedgehog family of signaling proteins in order for Hedgehog to exert its biological activity. These modifications include cleavage of its signal sequence, autocatalytic protein cleavage and the attachment of sterol groups. tmpzr1t_l9r_go_relaxed.owl hh protein processing|patched ligand processing|Hedgehog protein processing biological_process owl:Class GO:0071316 biolink:NamedThing cellular response to nicotine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:05:05Z biological_process owl:Class GO:1901130 biolink:NamedThing gentamycin biosynthetic process The chemical reactions and pathways resulting in the formation of gentamycin. tmpzr1t_l9r_go_relaxed.owl gentamycin anabolism|gentamycin formation|gentamycin synthesis|gentamycin biosynthesis yaf 2012-07-11T03:26:59Z biological_process owl:Class GO:0097160 biolink:NamedThing polychlorinated biphenyl binding Binding to a polychlorinated biphenyl (PCB), a biphenyl compound containing between 2 and 10 chlorine atoms attached to the two benzene rings. tmpzr1t_l9r_go_relaxed.owl polychlorobiphenyl binding|PCB binding pr 2011-09-23T02:33:22Z molecular_function owl:Class GO:0099167 biolink:NamedThing integral component of postsynaptic specialization membrane of symmetric synapse The component of the postsynaptic specialization membrane of a symmetric synapse consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl dos 2017-09-10T11:58:46Z cellular_component owl:Class GO:0048040 biolink:NamedThing UDP-glucuronate decarboxylase activity Catalysis of the reaction: H(+) + UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose. tmpzr1t_l9r_go_relaxed.owl UDP-D-glucuronate carboxy-lyase activity|UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)|uridine-diphosphoglucuronate decarboxylase activity|UDPglucuronate decarboxylase activity|UDP-glucuronic acid decarboxylase activity RHEA:23916|MetaCyc:UDP-GLUCURONATE-DECARBOXYLASE-RXN|EC:4.1.1.35|KEGG_REACTION:R01384 molecular_function owl:Class GO:0018311 biolink:NamedThing peptidyl-N4-hydroxymethyl-L-asparagine biosynthetic process from peptidyl-asparagine The chemical reactions and pathways resulting in the formation of N4-hydroxymethyl-L-asparagine from other compounds, including peptidyl-asparagine. tmpzr1t_l9r_go_relaxed.owl peptidyl-N4-hydroxymethyl-L-asparagine synthesis from peptidyl-asparagine|peptidyl-N4-hydroxymethyl-L-asparagine formation from peptidyl-asparagine|peptidyl-N4-hydroxymethyl-L-asparagine anabolism from peptidyl-asparagine RESID:AA0236 biological_process owl:Class GO:0018944 biolink:NamedThing tri-n-butyltin metabolic process The chemical reactions and pathways involving tri-n-butyltin, an organometallic compound composed of three butyl chains attached to a tin atom. Tri-n-butyltin is used as an antifouling agent in ship bottom paints and can be toxic to many marine organisms. tmpzr1t_l9r_go_relaxed.owl tri-n-butyltin metabolism UM-BBD_pathwayID:tbt biological_process owl:Class GO:0018943 biolink:NamedThing organotin metabolic process The chemical reactions and pathways involving organotin, an organic compound containing a tin atom. tmpzr1t_l9r_go_relaxed.owl organotin metabolism biological_process owl:Class GO:0035644 biolink:NamedThing phosphoanandamide dephosphorylation The process of removing one or more phosphate groups from a phosphorylated anandamide. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-21T02:14:04Z biological_process owl:Class GO:0017146 biolink:NamedThing NMDA selective glutamate receptor complex An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD. tmpzr1t_l9r_go_relaxed.owl N-methyl-D-aspartate selective glutamate receptor complex|NMDA-selective glutamate receptor cellular_component owl:Class GO:0098958 biolink:NamedThing retrograde axonal transport of mitochondrion The directed movement of mitochondria along microtubules in axons towards the cell body and away from the presynapse. tmpzr1t_l9r_go_relaxed.owl retrograde axon transport of mitochondria biological_process owl:Class GO:0150025 biolink:NamedThing oxidised low-density lipoprotein particle receptor activity Combining with an oxidised low-density lipoprotein particle and delivering the oxidised low-density lipoprotein particle into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl oxidised LDL particle receptor activity|ox-LDL receptor activity|oxidised low-density lipoprotein receptor activity|ox-LDL particle receptor activity|oxidized LDL particle receptor activity|oxidized LDL receptor activity|oxidised LDL receptor activity|oxidized low-density lipoprotein receptor activity|oxLDL particle receptor activity|oxidized low-density lipoprotein particle receptor activity|oxLDL receptor activity bc 2018-02-06T14:17:33Z molecular_function owl:Class GO:0042134 biolink:NamedThing rRNA primary transcript binding Binding to an unprocessed ribosomal RNA transcript. tmpzr1t_l9r_go_relaxed.owl pre-rRNA binding molecular_function owl:Class GO:1901928 biolink:NamedThing cadinene biosynthetic process The chemical reactions and pathways resulting in the formation of cadinene. tmpzr1t_l9r_go_relaxed.owl cadinene synthesis|cadinene formation|cadinene biosynthesis|cadinene anabolism ms 2013-02-18T14:54:34Z biological_process owl:Class GO:0061405 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-10T03:24:51Z biological_process owl:Class GO:0018513 biolink:NamedThing dibenzothiophene dihydrodiol dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydroxy-1,2-dihydrodibenzothiophene + NAD(+) = 1,2-dihydroxydibenzothiophene + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cis-1,2-dihydroxy-1,2-dihydrodibenzothiophene:NAD+ oxidoreductase activity KEGG_REACTION:R05310|EC:1.3.1.60|MetaCyc:1.3.1.60-RXN|RHEA:24188|UM-BBD_reactionID:r0161 molecular_function owl:Class GO:1901740 biolink:NamedThing negative regulation of myoblast fusion Any process that stops, prevents or reduces the frequency, rate or extent of myoblast fusion. tmpzr1t_l9r_go_relaxed.owl down regulation of myoblast fusion|down-regulation of myoblast fusion|downregulation of myoblast fusion|inhibition of myoblast fusion rl 2013-01-11T20:23:55Z biological_process owl:Class GO:0019231 biolink:NamedThing perception of static position The perception of the orientation of different parts of the body with respect to one another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033432 biolink:NamedThing CGG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CGG codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA Note that in the standard genetic code, CGG codes for arginine. molecular_function owl:Class GO:0043804 biolink:NamedThing imidazolone hydrolase activity Catalysis of the reaction: N-formimidoylglycine => H2O + imidazol-4-one. tmpzr1t_l9r_go_relaxed.owl RHEA:24935 Note that this reaction can occur spontaneously (see RHEA:24937). molecular_function owl:Class GO:0018838 biolink:NamedThing mandelate racemase activity Catalysis of the reaction: (S)-mandelate = (R)-mandelate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:MANDELATE-RACEMASE-RXN|RHEA:13945|EC:5.1.2.2|UM-BBD_reactionID:r0091 molecular_function owl:Class GO:0045895 biolink:NamedThing positive regulation of mating-type specific transcription, DNA-templated Any mating-type specific process that activates or increases the rate of cellular DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl positive regulation of mating-type specific transcription, DNA-dependent|up regulation of transcription, mating-type specific|up-regulation of transcription, mating-type specific|activation of transcription, mating-type specific|stimulation of transcription, mating-type specific|upregulation of transcription, mating-type specific biological_process owl:Class GO:0102996 biolink:NamedThing beta,beta digalactosyldiacylglycerol galactosyltransferase activity Catalysis of the reaction: a 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + a beta,beta digalactosyldiacylglycerol <=> a trigalactosyldiacylglycerol + a 1,2-diacyl-sn-glycerol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9721|EC:2.4.1.184 molecular_function owl:Class GO:0075527 biolink:NamedThing viral RNA editing The process by which bases in viral mRNA are chemically altered during viral transcription. This is usually the incorporation of 1 - 6 additional nucleotides, which shifts the reading frame, allowing the generation of different protein products or through a specific nucleotide change that eliminates the termination codon. tmpzr1t_l9r_go_relaxed.owl RNA editing involved in viral mRNA transcription VZ:857 jl 2011-08-04T02:07:03Z biological_process owl:Class GO:0046910 biolink:NamedThing pectinesterase inhibitor activity Binds to and stops, prevents or reduces the activity of pectinesterase. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'pectinesterase activity ; GO:0030599'. molecular_function owl:Class GO:0050175 biolink:NamedThing phenylalanine dehydrogenase activity Catalysis of the reaction: L-phenylalanine + H2O + NAD+ = phenylpyruvate + NH3 + NADH. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine dehydrogenase activity|PHD|L-phenylalanine:NAD+ oxidoreductase (deaminating)|PheDH activity EC:1.4.1.20|MetaCyc:PHENYLALANINE-DEHYDROGENASE-RXN|RHEA:21408 molecular_function owl:Class GO:0033487 biolink:NamedThing pelargonidin 3-O-glucoside biosynthetic process The chemical reactions and pathways resulting in the formation of pelargonidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits. tmpzr1t_l9r_go_relaxed.owl pelargonidin 3-O-glucoside anabolism|pelargonidin 3-O-glucoside biosynthesis|pelargonidin 3-O-glucoside formation|pelargonidin 3-O-glucoside synthesis MetaCyc:PWY-5125 biological_process owl:Class GO:0018782 biolink:NamedThing cis-chloroacrylic acid dehalogenase activity Catalysis of the reaction: cis-3-chloroacrylic acid + H2O = H+ + HCl + malonate semialdehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0688 molecular_function owl:Class GO:0051199 biolink:NamedThing regulation of prosthetic group metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group. tmpzr1t_l9r_go_relaxed.owl regulation of coenzyme and prosthetic group metabolism|regulation of prosthetic group metabolism|regulation of coenzyme and prosthetic group metabolic process biological_process owl:Class GO:0098869 biolink:NamedThing cellular oxidant detoxification Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098669 biolink:NamedThing superinfection exclusion The process by which a preexisting viral infection prevents a secondary infection with the same or a closely related virus. Typically some aspect of viral entry is inhibited, but post entry mechanisms have also been documented. tmpzr1t_l9r_go_relaxed.owl VZ:3971 dos 2017-01-16T17:25:21Z biological_process owl:Class GO:0106015 biolink:NamedThing negative regulation of inflammatory response to wounding Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response to wounding. tmpzr1t_l9r_go_relaxed.owl hjd 2017-04-28T20:09:46Z biological_process owl:Class GO:1990460 biolink:NamedThing leptin receptor binding Binding to a leptin receptor. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-18T20:17:43Z molecular_function owl:Class GO:0003050 biolink:NamedThing regulation of systemic arterial blood pressure by atrial natriuretic peptide The regulation of blood pressure mediated by the signaling molecule atrial natriuretic peptide. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by atrial natriuretic peptide|blood pressure regulation by ANP biological_process owl:Class GO:0090163 biolink:NamedThing establishment of epithelial cell planar polarity The specification and formation of the polarity of an epithelial cell along the plane of the epithelial tissue. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T08:59:57Z biological_process owl:Class GO:0070905 biolink:NamedThing serine binding Binding to 2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl Ser binding mah 2009-09-04T03:28:29Z molecular_function owl:Class GO:0033889 biolink:NamedThing N-sulfoglucosamine-3-sulfatase activity Catalysis of the hydrolysis of the 3-sulfate groups of the N-sulfo-D-glucosamine 3-O-sulfate units of heparin. tmpzr1t_l9r_go_relaxed.owl chondroitinsulfatase activity|N-sulfo-3-sulfoglucosamine 3-sulfohydrolase activity MetaCyc:3.1.6.15-RXN|EC:3.1.6.15 molecular_function owl:Class GO:0036455 biolink:NamedThing iron-sulfur transferase activity Catalysis of the transfer of a iron-sulfur cluster from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl Fe-S transferase activity Reactome:R-HSA-2564828 bf 2013-11-14T11:17:37Z molecular_function owl:Class GO:0102339 biolink:NamedThing 3-oxo-arachidoyl-CoA reductase activity Catalysis of the reaction: (R)-3-hydroxyicosanoyl-CoA(4-) + NADP(3-) <=> 3-oxoicosanoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13298|EC:1.1.1.330 molecular_function owl:Class GO:0070075 biolink:NamedThing tear secretion The regulated release of the aqueous layer of the tear film from the lacrimal glands. Tears are the liquid product of a process of lacrimation to clean and lubricate the eyes. Tear fluid contains water, mucin, lipids, lysozyme, lactoferrin, lipocalin, lacritin, immunoglobulins, glucose, urea, sodium, and potassium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098872 biolink:NamedThing G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration A G protein-coupled neurotransmitter receptor activity occurring in the postsynaptic membrane, that is involved in regulating the cytosolic concentration of calcium ions in the postsynapse. tmpzr1t_l9r_go_relaxed.owl G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels|G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration molecular_function owl:Class GO:0006060 biolink:NamedThing sorbitol metabolic process The chemical reactions and pathways involving sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl sorbitol metabolism MetaCyc:P461-PWY biological_process owl:Class GO:0001081 biolink:NamedThing nitrogen catabolite repression of transcription from RNA polymerase II promoter A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter by nitrogen catabolites krc 2010-10-27T03:38:05Z biological_process owl:Class GO:0015421 biolink:NamedThing ABC-type oligopeptide transporter activity Catalysis of the reaction: ATP + H2O + oligopeptide(out) = ADP + phosphate + oligopeptide(in). tmpzr1t_l9r_go_relaxed.owl ABC-type oligopeptide transporter|oligopeptide ABC transporter|ATP-dependent oligopeptide transmembrane transporter activity|oligopeptide permease activity|ATPase-coupled oligopeptide transmembrane transporter activity|oligopeptide-transporting ATPase activity EC:7.4.2.6|RHEA:37271|Reactome:R-HSA-5223317|MetaCyc:3.6.3.23-RXN molecular_function owl:Class GO:0070230 biolink:NamedThing positive regulation of lymphocyte apoptotic process Any process that activates or increases the frequency, rate or extent of lymphocyte death by apoptotic process. tmpzr1t_l9r_go_relaxed.owl upregulation of lymphocyte apoptosis|positive regulation of lymphocyte apoptosis|stimulation of lymphocyte apoptosis|up regulation of lymphocyte apoptosis|up-regulation of lymphocyte apoptosis|activation of lymphocyte apoptosis Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). biological_process owl:Class GO:0050944 biolink:NamedThing negative regulation of xanthophore differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of xanthophore differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of xanthophore differentiation|inhibition of xanthophore differentiation|down-regulation of xanthophore differentiation|down regulation of xanthophore differentiation Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. biological_process owl:Class GO:0032686 biolink:NamedThing negative regulation of hepatocyte growth factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of hepatocyte growth factor production. tmpzr1t_l9r_go_relaxed.owl negative regulation of HGF production|negative regulation of scatter factor production|down regulation of hepatocyte growth factor production|negative regulation of hepatocyte growth factor biosynthetic process|inhibition of hepatocyte growth factor production|downregulation of hepatocyte growth factor production|down-regulation of hepatocyte growth factor production GO:0048178 biological_process owl:Class GO:0005131 biolink:NamedThing growth hormone receptor binding Binding to a growth hormone receptor. tmpzr1t_l9r_go_relaxed.owl growth hormone|growth hormone receptor ligand molecular_function owl:Class GO:0008782 biolink:NamedThing adenosylhomocysteine nucleosidase activity Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenine + S-D-ribosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl AdoHcy/MTA nucleosidase activity|S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase activity|5'-methyladenosine nucleosidase activity|S-adenosyl-L-homocysteine homocysteinylribohydrolase activity|S-adenosylhomocysteine nucleosidase activity|S-adenosylhomocysteine hydrolase activity MetaCyc:ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN|EC:3.2.2.9|RHEA:17805 molecular_function owl:Class GO:0009711 biolink:NamedThing purine alkaloid biosynthetic process The chemical reactions and pathways resulting in the breakdown of purine alkaloids, compounds derived from purine and composed of an N-containing double ring structure. tmpzr1t_l9r_go_relaxed.owl purine alkaloid anabolism|purine alkaloid synthesis|purine alkaloid biosynthesis|purine alkaloid formation biological_process owl:Class GO:0097624 biolink:NamedThing UDP-galactose transmembrane import into Golgi lumen The directed movement of UDP-galactose into the Golgi lumen across the Golgi membrane. tmpzr1t_l9r_go_relaxed.owl UDP-galactose import into Golgi lumen pr 2014-08-18T14:59:23Z biological_process owl:Class GO:0036127 biolink:NamedThing 3-sulfino-L-alanine binding Binding to 3-sulfino-L-alanine (cysteine sulfinate). tmpzr1t_l9r_go_relaxed.owl cysteine sulfinate binding bf 2012-02-28T03:15:40Z molecular_function owl:Class GO:0048017 biolink:NamedThing inositol lipid-mediated signaling A series of molecular signals in which a cell uses an inositol-containing lipid to convert a signal into a response. Inositol lipids include the phosphoinositides (phosphatidylinositol and its phosphorylated derivatives), ceramides containing inositol, and inositol glycolipids. tmpzr1t_l9r_go_relaxed.owl inositol phospholipid-mediated signaling|inositol lipid-mediated signal transduction|inositol lipid-mediated signalling biological_process owl:Class GO:0016251 biolink:NamedThing RNA polymerase II general transcription initiation factor activity A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase II. The general transcription factors for RNA polymerase II include TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBP). In most species, RNA polymerase II transcribes all messenger RNAs (mRNAs), most untranslated regulatory RNAs, the majority of the snoRNAs, four of the five snRNAs (U1, U2, U4, and U5), and other small noncoding RNAs. For some small RNAs there is variability between species as to whether it is transcribed by RNA polymerase II or RNA polymerase III. However there are also rare exceptions, such as Trypanosoma brucei, where RNA polymerase I transcribes certain mRNAs in addition to its normal role in rRNA transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly|sequence-specific core promoter binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly|general RNA polymerase II transcription factor activity|GTF2 activity|transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly|basal RNA polymerase II transcription factor activity https://github.com/geneontology/go-ontology/issues/20253 General transcription factors assemble with the RNA polymerase at promoter DNA to form the pre-initiation complex (PIC), bind to and open promoter DNA, initiate RNA synthesis and stimulate the escape of the polymerase from the promoter. Not all subunits of the general transcription factor are necessarily present in all promoters to initiate transcription. The distinction between general transcription factors and DNA-binding transcription factors is that the latter modulate the selection of which genes are expressed under specific conditions, while general transcription factors belong to the constitutive machinery required for transcription to occur. GO:0001075|GO:0000983|GO:0003703 molecular_function owl:Class GO:0050590 biolink:NamedThing desacetoxyvindoline 4-hydroxylase activity Catalysis of the reaction: desacetoxyvindoline + 2-oxoglutarate + O2 = desacetylvindoline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl desacetoxyvindoline,2-oxoglutarate:oxygen oxidoreductase (4beta-hydroxylating)|desacetoxyvindoline,2-oxoglutarate:oxygen oxidoreductase (4-beta-hydroxylating) activity|desacetoxyvindoline-4-hydroxylase activity|D17H activity|deacetoxyvindoline,2-oxoglutarate:oxygen oxidoreductase (4beta-hydroxylating)|desacetyoxyvindoline-17-hydroxylase activity KEGG_REACTION:R05857|MetaCyc:1.14.11.20-RXN|RHEA:18973|EC:1.14.11.20 molecular_function owl:Class GO:0042017 biolink:NamedThing interleukin-22 binding Binding to interleukin-22. tmpzr1t_l9r_go_relaxed.owl IL-22 binding molecular_function owl:Class GO:0061880 biolink:NamedThing regulation of anterograde axonal transport of mitochondrion Any process that modulates the frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse. tmpzr1t_l9r_go_relaxed.owl regulation of anterograde axon transport of mitochondria dph 2017-05-30T14:15:46Z biological_process owl:Class GO:1903135 biolink:NamedThing cupric ion binding Binding to a cupric ion, copper(2+). tmpzr1t_l9r_go_relaxed.owl Cu(II) binding|copper(2+)binding|Cu(2+) binding bf 2014-06-26T14:38:16Z molecular_function owl:Class GO:0008833 biolink:NamedThing deoxyribonuclease IV (phage-T4-induced) activity Catalysis of the endonucleolytic cleavage to 5'-phosphooligonucleotide end-products. tmpzr1t_l9r_go_relaxed.owl E. coli endonuclease IV|DNA-adenine-transferase activity|endonuclease II|endonuclease IV activity|endodeoxyribonuclease IV (phage T4-induced) activity|Escherichia coli endonuclease II|endodeoxyribonuclease IV (phage T(4)-induced) activity|redoxyendonuclease activity|deoxriboendonuclease activity|deoxyribonuclease IV (phage T4-induced) activity EC:3.1.21.2|MetaCyc:3.1.21.2-RXN molecular_function owl:Class GO:0015092 biolink:NamedThing high-affinity ferric iron transmembrane transporter activity Enables the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity ferric uptake transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/14372 molecular_function owl:Class GO:1903876 biolink:NamedThing 11-deoxycortisol binding Binding to 11-deoxycortisol. tmpzr1t_l9r_go_relaxed.owl mr 2015-02-06T16:02:44Z molecular_function owl:Class GO:0034321 biolink:NamedThing alcohol O-octanoyltransferase activity Catalysis of the reaction: octanoyl-CoA + an alcohol = CoA + an octyl ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071748 biolink:NamedThing monomeric IgA immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl monomeric IgA1 antibody|monomeric IgA antibody|monomeric IgA2 antibody Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0034717 biolink:NamedThing Gemin6-Gemin7-unrip complex A protein complex that contains Gemin6, Gemin7, and unrip (STRAP), and can bind to snRNAs; may play a role in snRNP assembly. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070928 biolink:NamedThing regulation of mRNA stability, ncRNA-mediated Any process, mediated by small non-coding RNAs, that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs. tmpzr1t_l9r_go_relaxed.owl regulation of mRNA stability, non-coding RNA-mediated|ncRNA-mediated regulation of mRNA stability mah 2009-09-16T03:26:21Z biological_process owl:Class GO:0061675 biolink:NamedThing RBL family protein binding Binding to a member of the rhamnose-binding lectin (RBL) family, a family of animal lectins that show specific binding activities to L-rhamnose or D-galactose. tmpzr1t_l9r_go_relaxed.owl rhamnose-binding lectin family protein binding dph 2015-01-10T18:22:42Z molecular_function owl:Class GO:0036370 biolink:NamedThing D-alanyl carrier activity Binding a D-alanine and presenting it for processing or offloading to a cognate enzyme. Covalently binds the D-alanine via a phosphopantetheine prosthetic group and mediates protein-protein interactions with the enzyme conferring specificity. The carrier protein provides an essential link between the D-alanine-D-alanyl carrier protein ligase and the incorporation of D-alanine into lipoteichoic acid by transferring activated D-alanine to cell membrane phosphatidylglycerol (PG). tmpzr1t_l9r_go_relaxed.owl D-alanyl carrier protein bf 2012-10-08T10:30:33Z molecular_function owl:Class GO:0009671 biolink:NamedThing nitrate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nitrate(out) + H+(out) = nitrate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl nitrate:hydrogen symporter activity|nitrate(chlorate):hydrogen symporter activity|nitrate(chlorate):proton symporter activity molecular_function owl:Class GO:0018801 biolink:NamedThing glutaconyl-CoA decarboxylase activity Catalysis of the reaction: trans-glutaconyl-CoA + H(+) = but-2-enoyl-CoA + CO(2). tmpzr1t_l9r_go_relaxed.owl pent-2-enoyl-CoA carboxy-lyase activity|4-carboxybut-2-enoyl-CoA carboxy-lyase activity|4-carboxybut-2-enoyl-CoA carboxy-lyase (but-2-enoyl-CoA-forming)|glutaconyl coenzyme A decarboxylase activity EC:7.2.4.5|MetaCyc:GLUTACONYL-COA-DECARBOXYLASE-RXN|UM-BBD_reactionID:r0199|RHEA:23972|KEGG_REACTION:R03028 molecular_function owl:Class GO:0070885 biolink:NamedThing negative regulation of calcineurin-NFAT signaling cascade Any process that stops, prevents, or reduces the frequency, rate or extent of the calcineurin-NFAT signaling cascade. tmpzr1t_l9r_go_relaxed.owl inhibition of NFAT protein import into nucleus|negative regulation of NFAT protein import into nucleus|down-regulation of calcineurin-NFAT signaling cascade|negative regulation of calcineurin-NFAT signaling pathway|termination of calcineurin-NFAT signaling cascade|inhibition of calcineurin-NFAT signaling cascade|downregulation of calcineurin-NFAT signaling cascade|down regulation of calcineurin-NFAT signaling cascade|negative regulation of calcineurin-NFAT signalling cascade mah 2009-08-26T03:29:33Z GO:0051534 biological_process owl:Class GO:0004732 biolink:NamedThing pyridoxal oxidase activity Catalysis of the reaction: pyridoxal + H2O + O2 = 4-pyridoxate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl pyridoxal:oxygen 4-oxidoreductase activity MetaCyc:PYRIDOXAL-OXIDASE-RXN|EC:1.2.3.8|RHEA:23724 molecular_function owl:Class GO:0005159 biolink:NamedThing insulin-like growth factor receptor binding Binding to an insulin-like growth factor receptor. tmpzr1t_l9r_go_relaxed.owl insulin-like growth factor receptor ligand|insulin-like growth factor|IGF receptor binding GO:0005067 molecular_function owl:Class GO:2000638 biolink:NamedThing regulation of SREBP signaling pathway Any process that modulates the frequency, rate or extent of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of SREBP-mediated signaling pathway|regulation of SREBP-mediated signalling pathway vk 2011-04-20T02:45:59Z biological_process owl:Class GO:0015840 biolink:NamedThing urea transport The directed movement of urea into, out of or within the cell. Urea is the water-soluble compound H2N-CO-NH2. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046052 biolink:NamedThing UTP catabolic process The chemical reactions and pathways resulting in the breakdown of UTP, uridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl UTP catabolism|UTP degradation|UTP hydrolysis|UTP breakdown biological_process owl:Class GO:0102250 biolink:NamedThing linear malto-oligosaccharide phosphorylase activity Catalysis of the reaction: hydrogenphosphate + a linear malto-oligosaccharide = alpha-D-glucose 1-phosphate + a linear malto-oligosaccharide. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.1|MetaCyc:RXN-12392 molecular_function owl:Class GO:0085034 biolink:NamedThing suppression by symbiont of host I-kappaB kinase/NF-kappaB cascade Any process that stops, prevents, or reduces the frequency, rate or extent of host NF-kappaB-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade jl 2010-07-27T03:32:44Z biological_process owl:Class GO:0045509 biolink:NamedThing interleukin-27 receptor activity Combining with interleukin-27 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-27 receptor activity|IL-27R molecular_function owl:Class GO:1904681 biolink:NamedThing response to 3-methylcholanthrene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3-methylcholanthrene stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-09-22T19:50:03Z biological_process owl:Class GO:0005461 biolink:NamedThing UDP-glucuronic acid transmembrane transporter activity Enables the transfer of a UDP-glucuronic acid from one side of a membrane to the other. UDP-glucuronic acid is a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5603297|Reactome:R-HSA-174368 molecular_function owl:Class GO:0046452 biolink:NamedThing dihydrofolate metabolic process The chemical reactions and pathways involving dihydrofolate, the dihydroxylated derivative of folate. tmpzr1t_l9r_go_relaxed.owl dihydrofolate metabolism|dihydrofolate reduction biological_process owl:Class GO:0071364 biolink:NamedThing cellular response to epidermal growth factor stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to EGF stimulus mah 2009-12-11T03:05:34Z biological_process owl:Class GO:1903101 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate degradation|1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate breakdown|1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate catabolism bhm 2014-06-04T14:14:30Z biological_process owl:Class GO:0052856 biolink:NamedThing NADHX epimerase activity Catalysis of the reaction: (R)-NADHX = (S)-NADHX. tmpzr1t_l9r_go_relaxed.owl RHEA:32215|EC:5.1.99.6 molecular_function owl:Class GO:0039719 biolink:NamedThing tube viral factory A cytoplasmic viral factory derived from the Golgi in which Bunyaviridae replication takes place. Tubes are membranous structures close to the assembly and budding sites, and their function may be to connect viral replication and morphogenesis inside viral factories. tmpzr1t_l9r_go_relaxed.owl bf 2013-12-19T15:34:56Z cellular_component owl:Class GO:0004173 biolink:NamedThing ecdysone O-acyltransferase activity Catalysis of the reaction: Ecdysone + palmitoyl-CoA = CoA + ecdysone palmitate. tmpzr1t_l9r_go_relaxed.owl fatty acyl-CoA:ecdysone acyltransferase activity|acyl-CoA:ecdysone acyltransferase activity|palmitoyl-CoA:ecdysone palmitoyltransferase activity MetaCyc:ECDYSONE-O-ACYLTRANSFERASE-RXN|KEGG_REACTION:R02375|EC:2.3.1.139|RHEA:15217 molecular_function owl:Class GO:0044585 biolink:NamedThing cellobiose binding Binding to cellobiose, a disaccharide that represents the basic repeating unit of cellulose. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-24T04:55:10Z molecular_function owl:Class GO:0021746 biolink:NamedThing solitary nucleus development The process whose specific outcome is the progression of the solitary nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090345 biolink:NamedThing cellular organohalogen metabolic process The chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:1901002 biolink:NamedThing positive regulation of response to salt stress Any process that activates or increases the frequency, rate or extent of response to salt stress. tmpzr1t_l9r_go_relaxed.owl upregulation of response to ionic osmotic stress|up-regulation of response to ionic osmotic stress|positive regulation of response to ionic osmotic stress|activation of response to salt stress|activation of response to ionic osmotic stress|up-regulation of response to salt stress|up regulation of response to ionic osmotic stress|up regulation of response to salt stress|upregulation of response to salt stress|upregulation of salinity response|positive regulation of salinity response|activation of salinity response|up regulation of salinity response|up-regulation of salinity response dhl 2012-06-14T05:41:50Z biological_process owl:Class GO:0140067 biolink:NamedThing peptidyl-lysine butyrylation The butyrylation of a lysine residue in a protein. Butyryl is the univalent radical C3H7COO- derived from butyric acid. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-20T16:52:19Z biological_process owl:Class GO:0002056 biolink:NamedThing cytosine binding Binding to cytosine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021518 biolink:NamedThing spinal cord commissural neuron specification The process in which a cell becomes capable of differentiating autonomously into a commissural neuron in an environment that is neutral with respect to the developmental pathway. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102084 biolink:NamedThing L-dopa O-methyltransferase activity Catalysis of the reaction: L-dopa + S-adenosyl-L-methionine <=> 3-O-methyldopa + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.6|MetaCyc:RXN-10870 molecular_function owl:Class GO:0030466 biolink:NamedThing silent mating-type cassette heterochromatin assembly Repression of transcription at silent mating-type loci by alteration of the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl chromatin silencing at silent mating-type cassette|heterochromatic silencing at silent mating-type cassette|silent mating-type cassette chromatin silencing|aging-dependent sterility|establishment of chromatin silencing at silent mating-type cassette|chromatin silencing at HML and HMR https://github.com/geneontology/go-ontology/issues/19112 GO:0035389|GO:0006347 biological_process owl:Class GO:0103031 biolink:NamedThing L-Ala-D/L-Glu epimerase activity Catalysis of the reaction: L-alanyl-D-glutamate = L-alanyl-L-glutamate. tmpzr1t_l9r_go_relaxed.owl RHEA:28394|MetaCyc:RXN0-5228 molecular_function owl:Class GO:0120298 biolink:NamedThing peptide noradrenalinyltransferase activity Catalysis of the reaction: (R)-noradrenaline + L-glutaminyl-[protein] = 5-(R)-noradrenalinyl-L-glutamyl-[protein] + NH4(+). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 RHEA:66560 krc 2021-01-19T03:20:26Z molecular_function owl:Class GO:0070210 biolink:NamedThing Rpd3L-Expanded complex A protein complex that contains a histone deacetylase and is part of the chromatin remodeling machinery. In Saccharomyces cerevisiae this complex contains the Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p, Ash1p, Dot6p, Snt1, Sif2p, Set3p, Hos2p, Tos4p and Tod6p proteins. tmpzr1t_l9r_go_relaxed.owl Clr6-LE complex cellular_component owl:Class GO:2000086 biolink:NamedThing positive regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis Any process that activates or increases the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis. tmpzr1t_l9r_go_relaxed.owl positive regulation of mesonephric mesenchyme to epithelial transition dph 2010-09-03T06:08:24Z biological_process owl:Class GO:0071493 biolink:NamedThing cellular response to UV-B Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. tmpzr1t_l9r_go_relaxed.owl cellular response to UV-B light stimulus|cellular response to UVB radiation stimulus|cellular response to UVB light stimulus|cellular response to medium wave ultraviolet light stimulus|cellular response to UV-B radiation stimulus|cellular response to medium wave ultraviolet radiation stimulus mah 2009-12-18T02:21:56Z biological_process owl:Class GO:0010224 biolink:NamedThing response to UV-B Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. tmpzr1t_l9r_go_relaxed.owl response to medium wave ultraviolet radiation stimulus|response to UVB light stimulus|response to medium wave ultraviolet light stimulus|response to UVB radiation stimulus|response to UV-B light stimulus|response to UV-B radiation stimulus biological_process owl:Class GO:1902197 biolink:NamedThing isovaleryl-CoA(4-) biosynthetic process The chemical reactions and pathways resulting in the formation of isovaleryl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl isovaleryl-CoA(4-) synthesis|isovaleryl-CoA(4-) biosynthesis|isovaleryl-CoA(4-) anabolism|isovaleryl-CoA(4-) formation ms 2013-06-06T09:56:05Z biological_process owl:Class GO:0060659 biolink:NamedThing nipple sheath formation The developmental process pertaining to the initial formation of the nipple sheath from the unspecified epidermis. This process begins with a circular ingrowth of the epidermis around the region of the mammary sprout. It ends before the region begins to elevate. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T10:48:39Z biological_process owl:Class GO:0070309 biolink:NamedThing lens fiber cell morphogenesis The process in which the structures of a lens fiber cell are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a lens fiber cell. A lens fiber cell is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl lens fiber cell morphogenesis during differentiation|elongation of lens fiber cell|lens fibre cell morphogenesis biological_process owl:Class GO:0060141 biolink:NamedThing positive regulation of syncytium formation by virus The process in which a virus increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells. tmpzr1t_l9r_go_relaxed.owl syncytium formation induced by viral infection biological_process owl:Class GO:0005298 biolink:NamedThing proline:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: proline(out) + Na+(out) = proline(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium/proline symporter activity Reactome:R-HSA-444100|RHEA:28967 molecular_function owl:Class GO:0097335 biolink:NamedThing response to quetiapine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a quetiapine stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:03:22Z biological_process owl:Class GO:0032729 biolink:NamedThing positive regulation of interferon-gamma production Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. tmpzr1t_l9r_go_relaxed.owl upregulation of interferon-gamma production|activation of interferon-gamma production|stimulation of interferon-gamma production|up regulation of interferon-gamma production|positive regulation of interferon-gamma biosynthetic process|up-regulation of interferon-gamma production|positive regulation of interferon-gamma secretion|positive regulation of type II interferon production GO:0045078|GO:1902715 biological_process owl:Class GO:0090159 biolink:NamedThing sphingolipid biosynthesis involved in endoplasmic reticulum membrane organization The chemical reactions and pathways resulting in the formation of sphingolipids that contributes to endoplasmic reticulum membrane organization. tmpzr1t_l9r_go_relaxed.owl sphingolipid biosynthesis involved in endoplasmic reticulum membrane organisation tb 2009-12-08T08:31:13Z biological_process owl:Class GO:0004936 biolink:NamedThing alpha-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha-adrenergic receptors. tmpzr1t_l9r_go_relaxed.owl alpha adrenoceptor molecular_function owl:Class GO:0043820 biolink:NamedThing propionyl-CoA dehydrogenase activity Catalysis of the irreversible NADH-dependent formation of propionyl-CoA from acryloyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:1.3.99.- molecular_function owl:Class GO:0097520 biolink:NamedThing nucleotide-excision repair, preincision complex A multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage. tmpzr1t_l9r_go_relaxed.owl UvrB dimer|UvrA(2)-UvrB(2) complex|UvrA(2)B(2) complex pr 2013-10-17T14:32:37Z cellular_component owl:Class GO:0051700 biolink:NamedThing fructosyl-amino acid oxidase activity Catalysis of the reaction: fructosyl-amino acid + O2 = corresponding amino acid + glucosone + H2O2. tmpzr1t_l9r_go_relaxed.owl FAOD activity molecular_function owl:Class GO:0007490 biolink:NamedThing tergite morphogenesis The process in which the anatomical structures of the tergite are generated and organized. The tergite is the primary plate or sclerite forming the dorsal surface of any insect body segment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090444 biolink:NamedThing regulation of nematode larval development, heterochronic Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and the rate at which this time point is reached. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-24T13:24:43Z biological_process owl:Class GO:0140348 biolink:NamedThing lysophosphatidylcholine flippase activity Catalysis of the movement of lysophosphatidylcholine from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl lysophosphatidylcholine flippase activity (exoplasmic to cytosolic leaftlet) pg 2019-05-16T13:45:17Z molecular_function owl:Class GO:0022894 biolink:NamedThing Intermediate conductance calcium-activated potassium channel activity Enables the transmembrane transfer of potassium by a channel with a unit conductance of 20 to 85 picoSiemens that opens in response to stimulus by internal calcium ions. Intermediate conductance calcium-activated potassium channels are more sensitive to calcium than are large conductance calcium-activated potassium channels. Transport by a channel involves catalysis of facilitated diffusion of a solute (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel, without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl IK KCa channels|intermdiate conductance KCa channels|IK calcium-activated potassium channel activity molecular_function owl:Class GO:0043658 biolink:NamedThing host symbiosome A double-enveloped cell compartment, composed of the endosymbiont with its plasmalemma (as inner envelope) and an outer envelope (the perisymbiontic membrane) derived from the host cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140455 biolink:NamedThing cytoplasm protein quality control The chemical reactions and pathways resulting in the breakdown of misfolded proteins in the cytoplasm, which are either targeted to cytoplasmic proteasomes for degradation or protected by chaperones to shield thermosensitive proteins from degradation until conditions allow disaggregation and refolding. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19172 pg 2020-04-20T15:46:20Z biological_process owl:Class GO:0042838 biolink:NamedThing D-glucarate catabolic process The chemical reactions and pathways resulting in the breakdown of D-glucarate, the D-enantiomer of glucarate. tmpzr1t_l9r_go_relaxed.owl D-glucarate breakdown|D-glucarate catabolism|D-glucarate degradation|saccharate catabolic process|saccharate catabolism biological_process owl:Class GO:0046575 biolink:NamedThing rhamnogalacturonan acetylesterase activity Catalysis of the removal of acetylesters (as acetate) from galacturonic acid residues in the backbone of rhamnogalacturonan. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071261 biolink:NamedThing Ssh1 translocon complex A translocon complex that contains a core heterotrimer of alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Ssh1p, Sbh2p, and Sss1p. The Ssh1 translocon complex is involved in the cotranslational pathway of protein transport across the ER membrane, and recognizes proteins bearing strongly hydrophobic signal sequences. tmpzr1t_l9r_go_relaxed.owl Ssh1p-Sss1p-Sbh2p complex mah 2009-12-08T02:22:55Z cellular_component owl:Class GO:0020030 biolink:NamedThing infected host cell surface knob Protrusion that develops in the plasma membrane of a parasitized erythrocyte. An example of this component is found in Plasmodium species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052842 biolink:NamedThing inositol diphosphate pentakisphosphate diphosphatase activity Catalysis of the reaction: inositol diphosphate pentakisphosphate + H2O = inositol hexakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R05779|Reactome:R-HSA-1855198|RHEA:22384|Reactome:R-HSA-2023971|EC:3.6.1.52 ai 2011-11-29T04:14:22Z molecular_function owl:Class GO:0030346 biolink:NamedThing protein phosphatase 2B binding Binding to a protein phosphatase 2B. tmpzr1t_l9r_go_relaxed.owl calcineurin binding|protein phosphatase 3 binding molecular_function owl:Class GO:0018044 biolink:NamedThing C-terminal peptidyl-leucine amidation The formation of a C-terminal peptidyl-leucine amide by hydrolysis and oxidation of an interior Leu-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0091 biological_process owl:Class GO:0061649 biolink:NamedThing ubiquitin modification-dependent histone binding Binding to a histone protein in which a residue has been modified by ubiquitination. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl ubiquitinated histone binding dph 2014-11-04T10:21:04Z molecular_function owl:Class GO:0140036 biolink:NamedThing ubiquitin-dependent protein binding Binding to a protein upon ubiquitination of the target protein. tmpzr1t_l9r_go_relaxed.owl This term should only be used when the binding is shown to require ubiquitination of the target protein: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of ubiquitination. It may be that the ubiquitination causes a conformational change that allows binding of the protein to another region; this type of ubiquitination-dependent protein binding is valid for annotation to this term. pg 2017-05-18T06:29:14Z molecular_function owl:Class GO:0071846 biolink:NamedThing actin filament debranching An actin filament severing process that results in the removal of actin filament branches specifically at the branch points. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T02:15:42Z biological_process owl:Class GO:0050141 biolink:NamedThing nitroethane oxidase activity Catalysis of the reaction: nitroethane + H2O + O2 = acetaldehyde + nitrite + H2O2. tmpzr1t_l9r_go_relaxed.owl nitroethane:oxygen oxidoreductase activity|nitroethane reductase activity MetaCyc:NITROETHANE-OXIDASE-RXN|EC:1.7.3.1 molecular_function owl:Class GO:0052664 biolink:NamedThing nitroalkane oxidase activity Catalysis of the reaction: nitroalkane + H2O + O2 = an aldehyde or ketone + nitrite + H2O2. tmpzr1t_l9r_go_relaxed.owl NAO activity|nitroalkane:oxygen oxidoreductase activity|nitroalkane reductase activity MetaCyc:RXN-11045|EC:1.7.3.1|KEGG_REACTION:R00799 2010-10-11T10:50:59Z molecular_function owl:Class GO:0001967 biolink:NamedThing suckling behavior Specific behavior of a newborn or infant mammal that results in the derivation of nourishment from the breast. tmpzr1t_l9r_go_relaxed.owl nursing behavior biological_process owl:Class GO:0070369 biolink:NamedThing beta-catenin-TCF7L2 complex A protein complex that contains beta-catenin and TCF7L2 (TCF4), binds to the TCF DNA motif within a promoter element, and is involved in the regulation of WNT target gene transcription. tmpzr1t_l9r_go_relaxed.owl beta-catenin-TCF4 complex cellular_component owl:Class GO:1990907 biolink:NamedThing beta-catenin-TCF complex A protein complex that contains beta-catenin and a member of the T-cell factor (TCF)/lymphoid enhancer binding factor (LEF) family of transcription factors. tmpzr1t_l9r_go_relaxed.owl beta-catenin/LEF complex|beta-catenin/lymphoid enhancer binding factor complex|beta-catenin/T-cell factor complex bf 2015-12-01T16:32:44Z cellular_component owl:Class GO:0042190 biolink:NamedThing vanillin catabolic process The chemical reactions and pathways resulting in the breakdown of vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods. tmpzr1t_l9r_go_relaxed.owl vanillin degradation|vanillin breakdown|vanillin catabolism|vanillic aldehyde catabolic process|vanillic aldehyde catabolism biological_process owl:Class GO:0016287 biolink:NamedThing glycerone-phosphate O-acyltransferase activity Catalysis of the reaction: acyl-CoA + glycerone phosphate = 1-acylglycerone 3-phosphate + CoA. tmpzr1t_l9r_go_relaxed.owl dihydroxyacetone phosphate acyltransferase activity|acyl-CoA:glycerone-phosphate O-acyltransferase activity RHEA:17657|EC:2.3.1.42|MetaCyc:2.3.1.42-RXN|Reactome:R-HSA-75879|KEGG_REACTION:R01013|Reactome:R-HSA-1483002 molecular_function owl:Class GO:0106176 biolink:NamedThing clathrin-coated endocytic vesicle lumen The volume enclosed by the membrane of a clathrin-coated endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-12T15:44:51Z cellular_component owl:Class GO:0004534 biolink:NamedThing 5'-3' exoribonuclease activity Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl EC:3.1.13.-|Reactome:R-HSA-429845 molecular_function owl:Class GO:0097203 biolink:NamedThing phagocytic cup lip The tip or margin of the progressing circular lamella that engulfs a particle during phagocytosis. When the two lips of the cup fuse it is converted into a phagosome. tmpzr1t_l9r_go_relaxed.owl pr 2011-12-21T10:26:41Z cellular_component owl:Class GO:0090392 biolink:NamedThing sepal giant cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sepal giant cell. A sepal giant cell is a pavement cell that is part of the sepal epidermis and stretches one fifth the length of the sepal with a chromosome content of 16C. tmpzr1t_l9r_go_relaxed.owl tb 2010-12-14T04:38:06Z biological_process owl:Class GO:1903265 biolink:NamedThing positive regulation of tumor necrosis factor-mediated signaling pathway Any process that activates or increases the frequency, rate or extent of tumor necrosis factor-mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of adipocytokine signaling pathway|upregulation of tumor necrosis factor alpha-mediated signaling pathway|upregulation of adipocytokine signaling pathway|up regulation of tumor necrosis factor-mediated signaling pathway|positive regulation of TNF-alpha-mediated signaling pathway|activation of tumor necrosis factor alpha-mediated signaling pathway|up regulation of adipocytokine signaling pathway|activation of adipocytokine signaling pathway|positive regulation of tumor necrosis factor-mediated signalling pathway|positive regulation of tumor necrosis factor alpha-mediated signaling pathway|up-regulation of tumor necrosis factor-mediated signaling pathway|up-regulation of TNF-alpha-mediated signaling pathway|upregulation of tumor necrosis factor-mediated signalling pathway|up-regulation of tumor necrosis factor-mediated signalling pathway|activation of TNF-alpha-mediated signaling pathway|activation of tumor necrosis factor-mediated signaling pathway|activation of tumor necrosis factor-mediated signalling pathway|upregulation of TNF-alpha-mediated signaling pathway|up-regulation of adipocytokine signaling pathway|up regulation of tumor necrosis factor-mediated signalling pathway|up regulation of tumor necrosis factor alpha-mediated signaling pathway|up-regulation of tumor necrosis factor alpha-mediated signaling pathway|upregulation of tumor necrosis factor-mediated signaling pathway|up regulation of TNF-alpha-mediated signaling pathway bf 2014-08-07T10:26:59Z biological_process owl:Class GO:0045667 biolink:NamedThing regulation of osteoblast differentiation Any process that modulates the frequency, rate or extent of osteoblast differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005365 biolink:NamedThing myo-inositol transmembrane transporter activity Enables the transfer of myo-inositol from one side of a membrane to the other. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl vitamin Bh transporter activity molecular_function owl:Class GO:0034940 biolink:NamedThing 5-oxo-4,5-dihydropyrrole-2-carboxylate amidase activity Catalysis of the reaction: 5-oxo-4,5-dihydropyrrole-2-carboxylate + 2 H2O = 2-oxoglutarate + NH3. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0984 molecular_function owl:Class GO:0033749 biolink:NamedThing histone H3-methyl-arginine-3 demethylase activity Catalysis of the removal of the methyl group from a modified arginine residue at position 3 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3R3me demethylase activity|histone demethylase activity (H4-R3 specific) https://github.com/geneontology/go-ontology/issues/21089 molecular_function owl:Class GO:0035214 biolink:NamedThing eye-antennal disc development Progression of the eye-antennal imaginal disc over time, from its initial formation through to its metamorphosis to form adult structures including the eye, antenna, head capsule and maxillary palps. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071583 biolink:NamedThing negative regulation of zinc ion transmembrane transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of zinc ions (Zn2+) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl negative regulation of zinc ion membrane transport mah 2010-01-28T03:15:54Z biological_process owl:Class GO:0052096 biolink:NamedThing formation of syncytium involving giant cell for nutrient acquisition The assembly of a syncytium, a multi-nucleate and physiologically active aggregation of fused root cells induced by a symbiotic nematode in a plant host. The syncytium exclusively provides the nematode with nourishment during its sedentary life, for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation by organism of syncytium involving giant cell for nutrient acquisition from host|formation by symbiont of syncytium involving giant cell for nutrient acquisition from host https://github.com/geneontology/go-ontology/issues/20305 biological_process owl:Class GO:0036228 biolink:NamedThing protein localization to nuclear inner membrane A process in which a protein is transported to, or maintained in, a location within the nuclear inner membrane. tmpzr1t_l9r_go_relaxed.owl protein targeting to nuclear inner membrane|protein targeting to INM bf 2012-05-11T10:42:34Z biological_process owl:Class GO:0097442 biolink:NamedThing CA3 pyramidal cell dendrite A dendrite of a hippocampal CA3 pyramidal cell. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_1005001 pr 2012-12-06T13:47:23Z cellular_component owl:Class GO:0009307 biolink:NamedThing DNA restriction-modification system A defense process found in many bacteria and archaea that protects the organism from invading foreign DNA by cleaving it with a restriction endonuclease. The organism's own DNA is protected by methylation of a specific nucleotide, which occurs immediately following replication, in the same target site as the restriction enzyme. tmpzr1t_l9r_go_relaxed.owl DNA restriction biological_process owl:Class GO:0004638 biolink:NamedThing phosphoribosylaminoimidazole carboxylase activity Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + 2 H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO(2). tmpzr1t_l9r_go_relaxed.owl 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate carboxy-lyase activity|AIR carboxylase activity|class II PurE|5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate carboxy-lyase [5-amino-1-(5-phospho-D-ribosyl)imidazole-forming]|ADE2|5-amino-1-ribosylimidazole 5-phosphate carboxylase activity|1-(5-phosphoribosyl)-5-amino-4-imidazolecarboxylate carboxy-lyase activity|5-phosphoribosyl-5-aminoimidazole carboxylase activity RHEA:10792|MetaCyc:AIRCARBOXY-RXN|EC:4.1.1.21|Reactome:R-HSA-73806|KEGG_REACTION:R04209 molecular_function owl:Class GO:0042006 biolink:NamedThing masculinization of hermaphroditic germ-line The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite. An example of this is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070580 biolink:NamedThing base J metabolic process The chemical reactions and pathways involving base J (beta-D-glucosyl-hydroxymethyluracil), a hypermodified thymidine residue found in the genome of kinetoplastid parasites. This modified base is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. The base is synthesized in a two-step pathway. Initially, a thymidine residue in DNA is hydroxylated by a thymidine hydroxylase (TH) to form the intermediate hydroxymethyluracil, which is then glucosylated to form base J. tmpzr1t_l9r_go_relaxed.owl beta-D-glucosyl-hydroxymethyluracil metabolism|beta-D-glucosyl-HOMedU metabolic process|base J metabolism mah 2009-04-22T02:37:23Z biological_process owl:Class GO:0047093 biolink:NamedThing 4-hydroxyquinoline 3-monooxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + quinolin-4-ol = H(2)O + NAD(+) + quinoline-3,4-diol. tmpzr1t_l9r_go_relaxed.owl quinolin-4(1H)-one 3-monooxygenase activity|quinolin-4(1H)-one,NADH:oxygen oxidoreductase (3-oxygenating)|1-H-4-oxoquinoline 3-monooxygenase activity EC:1.14.13.62|MetaCyc:1.14.13.62-RXN|KEGG_REACTION:R05154|RHEA:19325 molecular_function owl:Class GO:0070883 biolink:NamedThing pre-miRNA binding Binding to a precursor microRNA (pre-miRNA) transcript, a stem-loop-containing precursor of microRNA. tmpzr1t_l9r_go_relaxed.owl precursor microRNA binding|pre-microRNA binding mah 2009-08-24T04:36:24Z molecular_function owl:Class GO:0043796 biolink:NamedThing glyceraldehyde dehydrogenase (NADP) activity Catalysis of the reaction: D-glyceraldehyde + H2O + NADP+ = D-glycerate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.89|RHEA:40163 molecular_function owl:Class GO:0034573 biolink:NamedThing didemethylisoproturon amidohydrolase activity Catalysis of the reaction: didemethylisoproturon + H2O = carbamic acid + 4-isopropylaniline. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0898 molecular_function owl:Class GO:0098974 biolink:NamedThing postsynaptic actin cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins in the postsynaptic actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901085 biolink:NamedThing pyrrolizidine alkaloid biosynthetic process The chemical reactions and pathways resulting in the formation of pyrrolizidine alkaloid. tmpzr1t_l9r_go_relaxed.owl pyrrolizidine alkaloid formation|pyrrolizidine alkaloid synthesis|pyrrolizidine alkaloid anabolism|pyrrolizidine alkaloid biosynthesis yaf 2012-07-05T10:28:28Z biological_process owl:Class GO:0071707 biolink:NamedThing immunoglobulin heavy chain V-D-J recombination The process in which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). tmpzr1t_l9r_go_relaxed.owl immunoglobulin V(D)J joining|immunoglobulin V-D-J joining|immunoglobulin V(D)J recombination mah 2010-03-09T04:20:31Z biological_process owl:Class GO:0036307 biolink:NamedThing 23S rRNA (adenine(2030)-N(6))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + adenine(2030) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(2030) in 23S rRNA. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-08T14:15:48Z molecular_function owl:Class GO:0033748 biolink:NamedThing hydrogenase (acceptor) activity Catalysis of the reaction: H2 + A = AH2. tmpzr1t_l9r_go_relaxed.owl hydrogenlyase activity|uptake hydrogenase activity|H2 producing hydrogenase activity|hydrogen:(acceptor) oxidoreductase activity|hydrogen-lyase activity|hydrogen:acceptor oxidoreductase activity MetaCyc:RXN0-5256|RHEA:12116|EC:1.12.99.6|MetaCyc:RXN0-4141 molecular_function owl:Class GO:0032866 biolink:NamedThing D-xylose:NADP reductase activity Catalysis of the reaction: D-xylitol + NADP+ = D-xylose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl xylose reductase activity|D-xylose reductase activity MetaCyc:RXN-8773|RHEA:27445 molecular_function owl:Class GO:0072061 biolink:NamedThing inner medullary collecting duct development The process whose specific outcome is the progression of the inner medullary collecting duct over time, from its formation to the mature structure. The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-25T04:08:45Z biological_process owl:Class GO:0018519 biolink:NamedThing cis-dihydroethylcatechol dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydro-3-ethylcatechol + NAD(+) = 3-ethylcatechol + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cis-1,2-dihydro-3-ethylcatechol:NAD+ oxidoreductase activity|cis-ethylbenzene glycol dehydrogenase activity UM-BBD_reactionID:r0309|RHEA:18101|KEGG_REACTION:R05313|EC:1.3.1.66|MetaCyc:1.3.1.66-RXN molecular_function owl:Class GO:0016711 biolink:NamedThing flavonoid 3'-monooxygenase activity Catalysis of the reaction: a flavonoid + NADPH + H+ + O2 = 3'-hydroxyflavonoid + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl flavonoid,NADPH:oxygen oxidoreductase (3'-hydroxylating)|NADPH:flavonoid-3'-hydroxylase activity|flavonoid 3'-hydroxylase activity|flavonoid 3-monooxygenase|flavonoid 3-hydroxylase EC:1.14.14.82|MetaCyc:FLAVONOID-3-MONOOXYGENASE-RXN|RHEA:16337 molecular_function owl:Class GO:0000372 biolink:NamedThing Group I intron splicing The splicing of Group I introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group I introns and involved in determining the locations of the splice sites (there do not appear to be consensus splice site sequences) as well as having a role in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions, generally with exogenous guanosine as the initiating nucleophile. The intron is excised as a linear piece (though it may subsequently circularize). tmpzr1t_l9r_go_relaxed.owl mRNA splicing Note that Group I introns are known to be found in a number of places: rRNA, mRNA, and tRNA in organelles of fungi, plants, and protists; tRNA and mRNA of bacteria and bacteriophage; rRNA of protists and fungi; and occasionally in mRNA of animal mitochondria (e.g. sea anemone). biological_process owl:Class GO:0004640 biolink:NamedThing phosphoribosylanthranilate isomerase activity Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl PRA isomerase activity|PRAI activity|IGPS:PRAI (indole-3-glycerol-phosphate synthetase/N-5'-phosphoribosylanthranilate isomerase complex)|N-(5-phospho-beta-D-ribosyl)anthranilate aldose-ketose-isomerase activity|N-(5-phospho-beta-D-ribosyl)anthranilate ketol-isomerase activity|N-(5'-phosphoribosyl)anthranilate isomerase activity EC:5.3.1.24|MetaCyc:PRAISOM-RXN|KEGG_REACTION:R03509|RHEA:21540 molecular_function owl:Class GO:0032216 biolink:NamedThing glucosaminyl-phosphatidylinositol O-acyltransferase activity Catalysis of the reaction: glucosaminyl-phosphatidylinositol + fatty acyl-CoA = glucosaminyl-acyl-phasphotidylinositol + CoA. tmpzr1t_l9r_go_relaxed.owl glucosaminyl-phosphotidylinositol O-acyltransferase activity|GPI-inositol acyltransferase molecular_function owl:Class GO:0080146 biolink:NamedThing L-cysteine desulfhydrase activity Catalysis of the reaction: L-cysteine + H2O = ammonia + pyruvate + hydrogen sulfide + H+. tmpzr1t_l9r_go_relaxed.owl EC:4.4.1.1|RHEA:24931|Reactome:R-HSA-1614591|MetaCyc:LCYSDESULF-RXN|Reactome:R-HSA-1614614 dhl 2010-01-27T04:50:43Z molecular_function owl:Class GO:0031780 biolink:NamedThing corticotropin hormone receptor binding Binding to a corticotropin hormone receptor. tmpzr1t_l9r_go_relaxed.owl adrenocorticotropin hormone receptor binding|adrenocorticotropic hormone receptor ligand|ACTH receptor binding|corticotropin receptor binding|adrenocorticotropin receptor binding GO:0071856 molecular_function owl:Class GO:0003276 biolink:NamedThing apoptotic process involved in heart valve morphogenesis Any apoptotic process that contributes to the shaping of a heart valve. tmpzr1t_l9r_go_relaxed.owl apoptosis involved in heart valve morphogenesis dph 2009-10-20T09:34:29Z biological_process owl:Class GO:0045952 biolink:NamedThing regulation of juvenile hormone catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl regulation of juvenile hormone breakdown|regulation of juvenile hormone degradation|regulation of juvenile hormone catabolism biological_process owl:Class GO:0009042 biolink:NamedThing valine-pyruvate transaminase activity Catalysis of the reaction: L-valine + pyruvate = 3-methyl-2-oxobutanoate + L-alanine. tmpzr1t_l9r_go_relaxed.owl alanine--valine transaminase activity|alanine-oxoisovalerate aminotransferase activity|transaminase C activity|valine-pyruvate aminotransferase activity|valine--pyruvate aminotransferase activity|L-valine:pyruvate aminotransferase activity RHEA:22912|EC:2.6.1.66|MetaCyc:VALINE-PYRUVATE-AMINOTRANSFER-RXN|KEGG_REACTION:R01215 molecular_function owl:Class GO:0106291 biolink:NamedThing superoxide-generating NADH oxidase activity. Catalysis of the reaction: NADH + 2 O2 = H(+) + NAD(+) + 2 superoxide. tmpzr1t_l9r_go_relaxed.owl RHEA:63184 hjd 2020-08-19T15:56:43Z molecular_function owl:Class GO:1904288 biolink:NamedThing BAT3 complex binding Binding to a BAT3 complex. tmpzr1t_l9r_go_relaxed.owl BAT3-TRC35-UBL4A complex binding|BAG6-UBL4A-TRC35 complex binding|Bag6 complex binding bf 2015-06-07T19:48:55Z molecular_function owl:Class GO:0106304 biolink:NamedThing mannogen biosynthetic process The chemical reactions and pathways resulting in the formation of mannogen, a mannose-containing polysaccharide that is a major energy reserve in Leishmania. tmpzr1t_l9r_go_relaxed.owl mannogen biosynthesis|mannogen formation|mannogen anabolism|beta-1,2-mannan biosynthetic process|mannogen synthesis hjd 2020-09-09T13:52:26Z biological_process owl:Class GO:0033896 biolink:NamedThing ribonuclease IX activity Catalysis of the endonucleolytic cleavage of poly(U) or poly(C) to fragments terminated by 3'-hydroxy and 5'-phosphate groups. tmpzr1t_l9r_go_relaxed.owl poly(U)- and poly(C)-specific endoribonuclease activity MetaCyc:3.1.26.10-RXN|EC:3.1.26.10 molecular_function owl:Class GO:0080156 biolink:NamedThing mitochondrial mRNA modification The covalent alteration within the mitochondrion of one or more nucleotides within an mRNA to produce an mRNA molecule with a sequence that differs from that coded genetically. tmpzr1t_l9r_go_relaxed.owl mitochondrial mRNA editing|mitochondrial RNA editing dhl 2010-09-01T03:55:48Z biological_process owl:Class GO:1901199 biolink:NamedThing positive regulation of calcium ion transport into cytosol involved in cellular response to salt stress Any positive regulation of calcium ion transport into cytosol that is involved in cellular response to salt stress. tmpzr1t_l9r_go_relaxed.owl positive regulation of calcium ion transport into cytosol involved in cellular response to ionic osmotic stress|positive regulation of calcium ion transport into cytosol involved in cellular salinity response al 2012-07-27T11:09:37Z biological_process owl:Class GO:0018759 biolink:NamedThing methenyltetrahydromethanopterin cyclohydrolase activity Catalysis of the reaction: 5,10-methenyl-5,6,7,8-tetrahydromethanopterin + H(2)O = N(5)-formyl-5,6,7,8-tetrahydromethanopterin + H(+). tmpzr1t_l9r_go_relaxed.owl N5,N10-methenyltetrahydromethanopterin cyclohydrolase activity|5,10-methenyltetrahydromethanopterin 10-hydrolase (decyclizing)|methenyl-H4MPT cyclohydrolase activity|5,10-methenyltetrahydromethanopterin cyclohydrolase activity|methenyl-H(4)MPT cyclohydrolase activity RHEA:19053|MetaCyc:3.5.4.27-RXN|KEGG_REACTION:R03464|EC:3.5.4.27|UM-BBD_reactionID:r0347 molecular_function owl:Class GO:0009365 biolink:NamedThing protein histidine kinase complex A complex that possesses protein histidine kinase activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051478 biolink:NamedThing mannosylglycerate metabolic process The chemical reactions and pathways involving mannosylglycerate, a very common compatible solute in thermophilic and hyperthermophilic organisms. tmpzr1t_l9r_go_relaxed.owl mannosylglycerate metabolism biological_process owl:Class GO:0052572 biolink:NamedThing response to host immune response Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to immune response of other organism involved in symbiotic interaction GO:0052564 biological_process owl:Class GO:0047670 biolink:NamedThing anhydrotetracycline monooxygenase activity Catalysis of the reaction: anhydrotetracycline + H(+) + NADPH + O(2) = 12-dehydrotetracycline + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl ATC oxygenase activity|anhydrotetracycline,NADPH:oxygen oxidoreductase (6-hydroxylating)|anhydrotetracycline oxygenase activity MetaCyc:ANHYDROTETRACYCLINE-MONOOXYGENASE-RXN|KEGG_REACTION:R04060|RHEA:11976|EC:1.14.13.38 molecular_function owl:Class GO:0034991 biolink:NamedThing nuclear meiotic cohesin complex A cohesin complex that mediates sister chromatid cohesion in the nucleus during meiosis; has a subunit composition distinct from that of the mitotic cohesin complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0120230 biolink:NamedThing recombinase activator activity Binds to and increases the activity of a recombinase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19631|https://github.com/geneontology/go-ontology/issues/19555 krc 2020-06-18T15:54:26Z molecular_function owl:Class GO:0034139 biolink:NamedThing regulation of toll-like receptor 3 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 3 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of TLR3 signaling pathway|regulation of toll-like receptor 3 signalling pathway biological_process owl:Class GO:0010474 biolink:NamedThing glucose-1-phosphate guanylyltransferase (GDP) activity Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate + GDP-glucose. tmpzr1t_l9r_go_relaxed.owl GDP:glucose-1-phosphate guanyltransferase activity molecular_function owl:Class GO:0016210 biolink:NamedThing naringenin-chalcone synthase activity Catalysis of the reaction: 3 malonyl-CoA + 4-coumaroyl-CoA = 4 CoA + naringenin chalcone + 3 CO2. tmpzr1t_l9r_go_relaxed.owl DOCS|malonyl-CoA:4-coumaroyl-CoA malonyltransferase (cyclizing) RHEA:11128|EC:2.3.1.74|MetaCyc:NARINGENIN-CHALCONE-SYNTHASE-RXN molecular_function owl:Class GO:0097022 biolink:NamedThing lymphocyte migration into lymph node The movement of a lymphocyte within the lymphatic system into a lymph node, and its subsequent positioning within defined functional compartments such as sites of cell activation by antigen. tmpzr1t_l9r_go_relaxed.owl lymphocyte homing pr 2011-03-29T04:29:27Z biological_process owl:Class GO:0097021 biolink:NamedThing lymphocyte migration into lymphoid organs The movement of a lymphocyte within the lymphatic system into lymphoid organs such as lymph nodes, spleen or Peyer's patches, and its subsequent positioning within defined functional compartments such as sites of cell activation by antigen. tmpzr1t_l9r_go_relaxed.owl lymphocyte homing pr 2011-03-29T04:26:08Z biological_process owl:Class GO:1905223 biolink:NamedThing epicardium morphogenesis The developmental process by which an epicardium is generated and organized. tmpzr1t_l9r_go_relaxed.owl heart epicardium morphogenesis|visceral serous pericardium of heart morphogenesis|visceral serous pericardium proper morphogenesis|pericardium visceral mesothelium morphogenesis rl 2016-06-07T10:02:32Z biological_process owl:Class GO:1905072 biolink:NamedThing cardiac jelly development The process whose specific outcome is the progression of cardiac jelly over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl heart cardiac jelly development rl 2016-03-23T13:17:59Z biological_process owl:Class GO:1904148 biolink:NamedThing cellular response to nonylphenol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonylphenol stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-04-14T17:01:50Z biological_process owl:Class GO:0110056 biolink:NamedThing positive regulation of actin filament annealing Any process that activates or increases the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-20T20:13:09Z biological_process owl:Class GO:0018777 biolink:NamedThing 1,3,4,6-tetrachloro-1,4-cyclohexadiene halidohydrolase activity Catalysis of the reaction: alkyl halide + H2O = alcohol + HCl. Substrates are 1,3(R),4,6(R)-tetrachloro-1,4-cyclohexadiene (forms 2,4,5-trichloro-2,5-cyclohexadiene-1-ol) and 2,4,5-trichloro-2,5-cyclohexadiene-1-ol (forms 2,5-dichloro-2,5-cyclohexadiene-1,4-diol). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070502 biolink:NamedThing capsule poly-gamma-glutamate biosynthetic process The chemical reactions and pathways resulting in the formation of poly-gamma-glutamate, a polymer of D- and/or L-glutamic acid residues linked by gamma-peptidyl bonds, that forms all or part of a bacterial capsule. tmpzr1t_l9r_go_relaxed.owl capsule poly-gamma-glutamate formation|capsule poly-gamma-glutamate synthesis|capsule poly-gamma-glutamate anabolism|capsule poly-gamma-glutamate biosynthesis|capsular poly-gamma-glutamate biosynthetic process biological_process owl:Class GO:0030431 biolink:NamedThing sleep Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain. tmpzr1t_l9r_go_relaxed.owl diapause|lethargus|dormancy Wikipedia:Sleep biological_process owl:Class GO:0061956 biolink:NamedThing penetration of cumulus oophorus The infiltration by sperm of the cumulus oophorus to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm. tmpzr1t_l9r_go_relaxed.owl penetration of cumulus mass|penetration of cumulus cells layer dph 2017-11-10T20:14:18Z biological_process owl:Class GO:1904558 biolink:NamedThing response to dextromethorphan Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dextromethorphan stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2015-08-14T16:09:17Z biological_process owl:Class GO:0120164 biolink:NamedThing conidium germination The physiological and developmental changes that occur in a conidium or asexual spore following release from dormancy up to the earliest signs of development such as swelling of conidia, adhesion and nuclear decondensation followed by hyphal growth several hours later. In many genera of plant pathogenic fungi (e.g. Magnaporthe, Colletotrichum, Ustilago), swelling of the hyphal tips to form appressorium, metabolic activities including respiration, RNA and protein synthesis and trehalose breakdown and changes in cell wall composition can be detected in conidium germination. tmpzr1t_l9r_go_relaxed.owl krc 2018-05-17T17:03:32Z biological_process owl:Class GO:0033971 biolink:NamedThing hydroxyisourate hydrolase activity Catalysis of the reaction: 5-hydroxyisourate + H(2)O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+). tmpzr1t_l9r_go_relaxed.owl HIUHase activity|5-hydroxyisourate hydrolase activity|5-hydroxyisourate amidohydrolase activity MetaCyc:3.5.2.17-RXN|KEGG_REACTION:R06601|EC:3.5.2.17|RHEA:23736 molecular_function owl:Class GO:0102699 biolink:NamedThing 2-methylpropionitrile hydroxylase activity Catalysis of the reaction: H+ + 2-methylpropionitrile + O2 + NADPH <=> 2-hydroxy-2-methylpropanenitrile + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:51964|MetaCyc:RXN-5082 molecular_function owl:Class GO:2001111 biolink:NamedThing positive regulation of lens epithelial cell proliferation Any process that activates or increases the frequency, rate or extent of lens epithelial cell proliferation. tmpzr1t_l9r_go_relaxed.owl yaf 2011-09-30T02:04:59Z biological_process owl:Class GO:0018237 biolink:NamedThing urease activator activity Increases the activity of urease by promoting the incorporation of nickel into the active site. tmpzr1t_l9r_go_relaxed.owl urease activase activity molecular_function owl:Class GO:0036266 biolink:NamedThing Cdc48p-Npl4p-Vms1p AAA ATPase complex A multiprotein ATPase complex involved in the release of polyubiquitinated proteins, including those damaged by oxidative stress, from the outer mitochondria membrane into the cytoplasm where they are presented to the proteasome for proteolysis, a process also referred to as mitochondria-associated degradation (MAD). In budding yeast, this complex includes Cdc48p, Npl4p and Vms1p. tmpzr1t_l9r_go_relaxed.owl Vms1p-Cdc48p-Npl4p complex|Cdc48p-Npl4p-Vms1p complex|Vms1-Cdc48-Npl4 complex bf 2012-06-29T10:57:48Z cellular_component owl:Class GO:0102091 biolink:NamedThing phosphatidylinositol-5-phosphate 5-phosphatase activity Catalysis of the reaction: H2O + a 1-phosphatidyl-1D-myo-inositol 5-phosphate = hydrogenphosphate + an L-1-phosphatidyl-inositol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10962 molecular_function owl:Class GO:0050273 biolink:NamedThing S-succinylglutathione hydrolase activity Catalysis of the reaction: S-succinylglutathione + H(2)O = glutathione + H(+) + succinate. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R00499|MetaCyc:S-SUCCINYLGLUTATHIONE-HYDROLASE-RXN|RHEA:16713|EC:3.1.2.13 molecular_function owl:Class GO:0035831 biolink:NamedThing palmatine biosynthetic process The chemical reactions and pathways resulting in the formation of palmatine, a berberine alkaloid found in many plants. tmpzr1t_l9r_go_relaxed.owl palmatine anabolism|palmatine biosynthesis|palmatine formation|palmatine synthesis bf 2011-05-04T03:06:06Z biological_process owl:Class GO:0043776 biolink:NamedThing cobalt-precorrin-6B C5-methyltransferase activity Catalysis of the reaction: S-adenosylmethionine + cobalt-precorrin 6B = S-adenosylhomocysteine + cobalt-precorrin 7. tmpzr1t_l9r_go_relaxed.owl precorrin-6Y methylase|precorrin-6 methyltransferase activity|cobalt-precorrin 6B C5-methyltransferase activity|precorrin-6Y C5,15-methyltransferase (decarboxylating) MetaCyc:RXN-8766|RHEA:36067 molecular_function owl:Class GO:0061899 biolink:NamedThing 11-cis-retinal 3,4-desaturase activity Catalysis of the reaction: 11-cis-retinal + 2 H(+) + O2 + 2 reduced [adrenodoxin] = 11-cis-3,4-didehydro-retinal + 2 H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-12T15:03:57Z molecular_function owl:Class GO:0050423 biolink:NamedThing thiamine oxidase activity Catalysis of the reaction: thiamine + 2 O2 = thiamine acetic acid + 2 H2O2. tmpzr1t_l9r_go_relaxed.owl thiamin:oxygen 5-oxidoreductase activity|thiamine dehydrogenase activity|thiamin dehydrogenase activity|thiamine:oxygen 5-oxidoreductase activity|thiamin oxidase activity RHEA:21280|EC:1.1.3.23|MetaCyc:THIAMIN-OXIDASE-RXN molecular_function owl:Class GO:0007042 biolink:NamedThing lysosomal lumen acidification Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl lysosome pH reduction biological_process owl:Class GO:0050505 biolink:NamedThing hydroquinone glucosyltransferase activity Catalysis of the reaction: hydroquinone + UDP-D-glucose = H(+) + hydroquinone O-beta-D-glucopyranoside + UDP. tmpzr1t_l9r_go_relaxed.owl arbutin synthase activity|UDP-glucose:hydroquinone-O-beta-D-glucosyltransferase activity|hydroquinone:O-glucosyltransferase activity|UDPglucose:hydroquinone-O-beta-D-glucosyltransferase activity RHEA:12560|KEGG_REACTION:R05769|MetaCyc:2.4.1.218-RXN|EC:2.4.1.218 molecular_function owl:Class GO:0030622 biolink:NamedThing U4atac snRNA binding Binding to a U4atac small nuclear RNA (U4atac snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902920 biolink:NamedThing poly(hydroxyvalerate) metabolic process The chemical reactions and pathways involving poly(hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(hydroxyvalerate) metabolism tt 2014-04-21T19:12:32Z biological_process owl:Class GO:0098530 biolink:NamedThing positive regulation of strand invasion Any process that increases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. tmpzr1t_l9r_go_relaxed.owl positive regulation of D-loop formation|positive regulation of Rad51-mediated strand invasion|positive regulation of D-loop biosynthesis dos 2013-10-16T12:15:59Z biological_process owl:Class GO:0047629 biolink:NamedThing ADP deaminase activity Catalysis of the reaction: ADP + H2O = IDP + NH3. tmpzr1t_l9r_go_relaxed.owl adenosine diphosphate deaminase activity|adenosinepyrophosphate deaminase activity|ADP aminohydrolase activity RHEA:12741|EC:3.5.4.7|MetaCyc:ADP-DEAMINASE-RXN molecular_function owl:Class GO:1990564 biolink:NamedThing protein polyufmylation Covalent attachment of the ubiquitin-like protein UFM1 to a protein, forming an UFM1 chain. tmpzr1t_l9r_go_relaxed.owl jl 2014-11-26T14:15:36Z biological_process owl:Class GO:0071569 biolink:NamedThing protein ufmylation Covalent attachment of the ubiquitin-like protein UFM1 to another protein. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:12:01Z biological_process owl:Class GO:0072637 biolink:NamedThing interleukin-32 production The appearance of interleukin-32 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-32 biosynthetic process|IL-32 production|NK4 production|TAIF production|interleukin-32 secretion|IL32 production bc 2020-02-21T10:26:40Z GO:0150188|GO:0072638 biological_process owl:Class GO:0030060 biolink:NamedThing L-malate dehydrogenase activity Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl (S)-malate:NAD+ oxidoreductase activity|malic dehydrogenase activity|NAD-malate dehydrogenase activity|NAD-linked malate dehydrogenase activity|MDH|NAD-dependent malic dehydrogenase activity|malic acid dehydrogenase activity|L-malate-NAD+ oxidoreductase activity|NAD-L-malate dehydrogenase activity|malate (NAD) dehydrogenase activity|NAD-dependent malate dehydrogenase activity|NAD-malic dehydrogenase activity|NAD-specific malate dehydrogenase activity MetaCyc:MALATE-DEH-RXN|EC:1.1.1.37|Reactome:R-HSA-198508|Reactome:R-HSA-70979|RHEA:21432|Reactome:R-HSA-71783 molecular_function owl:Class GO:0060691 biolink:NamedThing epithelial cell maturation involved in salivary gland development The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell of the salivary gland to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T01:06:00Z biological_process owl:Class GO:1990180 biolink:NamedThing mitochondrial tRNA 3'-end processing The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl tRNA 3' processing in mitochondria|tRNA 3'-end processing in mitochondria|tRNA 3' processing in mitochondrion mah 2013-08-30T16:17:36Z biological_process owl:Class GO:0047215 biolink:NamedThing indole-3-acetate beta-glucosyltransferase activity Catalysis of the reaction: (indol-3-yl)acetate + UDP-D-glucose = 1-O-(indol-3-ylacetyl)-beta-D-glucose + UDP. tmpzr1t_l9r_go_relaxed.owl UDPG-indol-3-ylacetyl glucosyl transferase activity|UDP-glucose:indol-3-acetic acid glucosyltransferase activity|indol-3-ylacetylglucose synthase activity|UDP-glucose:auxin glucosyltransferase activity|UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase activity|UDP-glucose:indol-3-ylacetate glucosyl-transferase activity|IAA-Glu synthetase activity|uridine diphosphoglucose-indoleacetate glucosyltransferase activity|IAGlu synthase activity|UDPglucose:indole-3-acetate beta-D-glucosyltransferase activity|IAA-glucose synthase activity|UDP-glucose:indol-3-ylacetate glucosyltransferase activity KEGG_REACTION:R03094|MetaCyc:2.4.1.121-RXN|RHEA:14921|EC:2.4.1.121 molecular_function owl:Class GO:0060813 biolink:NamedThing anterior mRNA localization involved in anterior/posterior axis specification Any process in which a mRNA is transported to, and maintained in the anterior portion of the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl anterior mRNA localisation involved in anterior/posterior axis specification dph 2009-08-07T09:51:47Z biological_process owl:Class GO:0008124 biolink:NamedThing 4-alpha-hydroxytetrahydrobiopterin dehydratase activity Catalysis of the reaction: (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterin = (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7,8-dihydro-6H-pterin + H(2)O. tmpzr1t_l9r_go_relaxed.owl 4alpha-hydroxy-tetrahydropterin dehydratase activity|4a-hydroxytetrahydrobiopterin dehydratase activity|pterin-4-alpha-carbinolamine dehydratase activity|pterin-4alpha-carbinolamine dehydratase activity|4-alpha-hydroxy-tetrahydropterin dehydratase activity|tetrahydrobiopterin dehydratase activity|4a-hydroxytetrahydrobiopterin hydro-lyase activity|pterin-4a-carbinolamine dehydratase activity|(6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterin hydro-lyase [(6R)-6-(L-erythro-1,2-dihydroxypropyl)-7,8-dihydro-6H-pterin-forming] RHEA:11920|KEGG_REACTION:R04734|MetaCyc:RXN-7908|EC:4.2.1.96|Reactome:R-HSA-71146 molecular_function owl:Class GO:0034606 biolink:NamedThing response to hermaphrodite contact The response by the male to a hermaphrodite after initial contact following mate finding. The male stops forward locomotion, presses the ventral side of his tail against his partner's body, and begins moving backward along the hermaphrodite. Male response behavior is initiated when sensory neurons located in the rays of his tail contact a potential mate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042608 biolink:NamedThing T cell receptor binding Binding to a T cell receptor, the antigen-recognizing receptor on the surface of T cells. tmpzr1t_l9r_go_relaxed.owl T-cell receptor binding|T-lymphocyte receptor binding|TCR binding|T lymphocyte receptor binding molecular_function owl:Class GO:1901784 biolink:NamedThing p-cresol metabolic process The chemical reactions and pathways involving p-cresol. tmpzr1t_l9r_go_relaxed.owl p-cresol metabolism yaf 2013-01-16T11:03:59Z biological_process owl:Class GO:0009631 biolink:NamedThing cold acclimation Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106358 biolink:NamedThing glycerol-1-phosphate dehydrogenase [NADP+] activity Catalysis of the reaction: NADP+ + sn-glycerol 1-phosphate = dihydroxyacetone phosphate + H+ + NADPH. tmpzr1t_l9r_go_relaxed.owl RHEA:21416 hjd 2021-02-02T06:08:14Z molecular_function owl:Class GO:0050492 biolink:NamedThing glycerol-1-phosphate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: NAD(P)+ + sn-glycerol-1-phosphate = NAD(P)H + H+ + dihydroxy-acetone-phosphate. tmpzr1t_l9r_go_relaxed.owl sn-glycerol-1-phosphate:NAD(P)+ 2-oxidoreductase activity MetaCyc:1.1.1.261-RXN|EC:1.1.1.261 molecular_function owl:Class GO:0042500 biolink:NamedThing aspartic endopeptidase activity, intramembrane cleaving Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain, occurring within a membrane. tmpzr1t_l9r_go_relaxed.owl EC:3.4.23.-|Reactome:R-HSA-8863101 Note that although GO generally avoids the use of localization information in terms, in this case an exception was made. This is because the fact that the cleavage occurs within the membrane is integral to its function, as it is the only thing that distinguishes this group from other aspartic endopeptidases. molecular_function owl:Class GO:0070402 biolink:NamedThing NADPH binding Binding to the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide phosphate binding|reduced NADP binding|NADP (reduced) binding molecular_function owl:Class GO:0021790 biolink:NamedThing chemorepulsion of branchiomotor neuron axon in branchial arch mesenchyme The process in which a branchiomotor neuron growth cone in the branchial arch mesenchyme is directed to a specific target site in the branchial arch mesenchyme in response to a repulsive chemical cue. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis of branchiomotor neuron axon in branchial arch mesenchyme biological_process owl:Class GO:0103118 biolink:NamedThing UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase activity Catalysis of the reaction: UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine(1-) + an (3R)-3-hydroxymyristoyl-[acp] <=> UDP-2,3-bis[O-(3R)-3-hydroxymyristoyl]-alpha-D-glucosamine + H+ + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase activity MetaCyc:UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN|EC:2.3.1.191|RHEA:17817 GO:0043764 molecular_function owl:Class GO:0019074 biolink:NamedThing viral RNA genome packaging The packaging of viral RNA (single-stranded or double-stranded) into a nucleocapsid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003692 biolink:NamedThing left-handed Z-DNA binding Binding to DNA in the Z form, i.e. a left-handed helix in which the phosphate backbone zigzags. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905904 biolink:NamedThing positive regulation of mesoderm formation Any process that activates or increases the frequency, rate or extent of mesoderm formation. tmpzr1t_l9r_go_relaxed.owl activation of mesoderm formation|up regulation of mesoderm formation|up-regulation of mesoderm formation|upregulation of mesoderm formation rph 2017-02-03T12:28:38Z biological_process owl:Class GO:2000382 biolink:NamedThing positive regulation of mesoderm development Any process that activates or increases the frequency, rate or extent of mesoderm development. tmpzr1t_l9r_go_relaxed.owl vk 2011-02-15T03:10:12Z biological_process owl:Class GO:0007258 biolink:NamedThing JUN phosphorylation The process of introducing a phosphate group into a JUN protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000338 biolink:NamedThing protein deneddylation The removal of a ubiquitin-like protein of the NEDD8 type from a protein. tmpzr1t_l9r_go_relaxed.owl cullin deneddylation GO:0010388 biological_process owl:Class GO:0004027 biolink:NamedThing alcohol sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an alcohol = adenosine 3',5'-bisphosphate + an alkyl sulfate. tmpzr1t_l9r_go_relaxed.owl hydroxysteroid sulfotransferase activity|delta5-3beta-hydroxysteroid sulfokinase activity|HST|3'-phosphoadenylyl-sulfate:alcohol sulfotransferase activity|alcohol sulphotransferase activity|3beta-hydroxy steroid sulfotransferase activity|steroid sulfokinase activity|steroid alcohol sulfotransferase|alcohol/hydroxysteroid sulfotransferase activity|sterol sulfotransferase activity|5alpha-androstenol sulfotransferase activity|3-hydroxysteroid sulfotransferase activity|3beta-hydroxysteroid sulfotransferase activity|estrogen sulfokinase activity|sterol sulfokinase activity|dehydroepiandrosterone sulfotransferase activity|estrogen sulfotransferase EC:2.8.2.2|Reactome:R-HSA-176609|MetaCyc:ALCOHOL-SULFOTRANSFERASE-RXN|Reactome:R-HSA-176494|RHEA:22552 molecular_function owl:Class GO:0098724 biolink:NamedThing symmetric stem cell division Symmetric division of a stem cell to produce two stem cells of the same type as the parent. Symmetric stem cell division is necessary for amplification of stem cell populations in the absence of sources of stem cells external to an existing population. tmpzr1t_l9r_go_relaxed.owl Examples include the self-renewal of spermatogonial stem cells and (some) division during amplification of skeletal muscle satellite cell populations. biological_process owl:Class GO:0102714 biolink:NamedThing gibberellin A12,oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A12 + 2-oxoglutarate + O2 <=> gibberellin A14 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6544 molecular_function owl:Class GO:0070952 biolink:NamedThing regulation of neutrophil mediated killing of gram-positive bacterium Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a gram-positive bacterium, the directed killing of a gram-positive bacterium by a neutrophil. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-01T02:14:36Z biological_process owl:Class GO:0018009 biolink:NamedThing N-terminal peptidyl-L-cysteine N-palmitoylation The covalent attachment of a palmitoyl group to a nitrogen (N) atom in an N-terminal cysteine residue to form N-palmitoyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0060 biological_process owl:Class GO:0050250 biolink:NamedThing retinal oxidase activity Catalysis of the reaction: retinal + O2 + H2O = retinoate + H2O2. tmpzr1t_l9r_go_relaxed.owl retinene oxidase activity|retinal:oxygen oxidoreductase activity RHEA:22520|MetaCyc:RETINAL-OXIDASE-RXN|EC:1.2.3.11 molecular_function owl:Class GO:0070338 biolink:NamedThing 5'-flap-structured DNA binding Binding to a 5'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 5'-end of DNA or RNA protrudes from a double-stranded DNA molecule. 5'-flap structures can be formed during DNA repair or lagging strand synthesis; in the latter case RNA flaps form from lagging strand RNA primers. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1900086 biolink:NamedThing positive regulation of peptidyl-tyrosine autophosphorylation Any process that activates or increases the frequency, rate or extent of peptidyl-tyrosine autophosphorylation. tmpzr1t_l9r_go_relaxed.owl up-regulation of tyrosine autophosphorylation|activation of receptor tyrosine kinase autophosphorylation|up-regulation of peptidyl-tyrosine autophosphorylation|upregulation of tyrosine autophosphorylation|upregulation of peptidyl-tyrosine autophosphorylation|activation of peptidyl-tyrosine autophosphorylation|up regulation of peptidyl-tyrosine autophosphorylation|positive regulation of tyrosine autophosphorylation|up-regulation of receptor tyrosine kinase autophosphorylation|activation of tyrosine autophosphorylation|positive regulation of receptor tyrosine kinase autophosphorylation|up regulation of tyrosine autophosphorylation|upregulation of receptor tyrosine kinase autophosphorylation|up regulation of receptor tyrosine kinase autophosphorylation bf 2012-02-03T10:17:15Z biological_process owl:Class GO:0035753 biolink:NamedThing maintenance of DNA trinucleotide repeats Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-23T10:29:02Z biological_process owl:Class GO:0075053 biolink:NamedThing penetration peg formation The assembly by the symbiont of a peg-like structure for the purpose of penetration into its host organism, which penetrates through the host cuticle and epidermal cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl initiation of symbiont penetration peg|symbiont penetration peg formation for entry into host|symbiont penetration peg initiation|formation of symbiont penetration peg for entry into host https://github.com/geneontology/go-ontology/issues/18557 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. GO:0075057 biological_process owl:Class GO:0003127 biolink:NamedThing detection of nodal flow The series of events by which an endogenous stimulus is received by a cilium on a cell and converted to a molecular signal contributing to left/right asymmetry. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T02:45:48Z biological_process owl:Class GO:0030661 biolink:NamedThing chitosome membrane The lipid bilayer surrounding a chitosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044807 biolink:NamedThing macrophage migration inhibitory factor production The appearance of macrophage migration inhibitory factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl MIF production jl 2013-09-11T12:04:09Z biological_process owl:Class GO:0090284 biolink:NamedThing positive regulation of protein glycosylation in Golgi Any process that increases the rate, frequency, or extent of the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid in any compartment of the Golgi apparatus. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein amino acid glycosylation in Golgi tb 2010-02-18T02:43:55Z biological_process owl:Class GO:0039716 biolink:NamedThing viroplasm viral factory A cytoplasmic viral factory that is electron dense due to high levels of viral RNA. Produced by nucleo-cytoplasmic large DNA viruses (NCLDV) like Poxviridae, Asfarviridae and Iridoviridae, and dsRNA viruses like Reoviridae. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Viroplasm bf 2013-12-19T15:22:29Z cellular_component owl:Class GO:0034016 biolink:NamedThing polyenoic fatty acid isomerase activity Catalysis of the reaction: all-cis-icosa-5,8,11,14,17-pentaenoate = (5Z,7E,9E,14Z,17Z)-icosapentaenoate. tmpzr1t_l9r_go_relaxed.owl (5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate delta8,11-delta7,9-isomerase (trans-double-bond-forming) activity|(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate delta8,11-delta7,9-isomerase (trans-double-bond-forming) activity|(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate delta8,11-delta7,8-isomerase activity|eicosapentaenoate cis-delta5,8,11,14,17-eicosapentaenoate cis-delta5-trans-delta7,9-cis-delta14,17 isomerase activity|PFI KEGG_REACTION:R06502|EC:5.3.3.13|MetaCyc:5.3.3.13-RXN|RHEA:14889 molecular_function owl:Class GO:0071703 biolink:NamedThing detection of organic substance The series of events in which an organic substance stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-08T03:18:44Z biological_process owl:Class GO:0036211 biolink:NamedThing protein modification process The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). tmpzr1t_l9r_go_relaxed.owl protein modification bf 2012-04-26T01:47:12Z biological_process owl:Class GO:0007280 biolink:NamedThing pole cell migration The directed movement of a pole cell (germline progenitors in insects) from its site of production at the posterior pole of the embryo through to the site where the gonads will form. tmpzr1t_l9r_go_relaxed.owl See also the Cell Ontology term 'pole cell ; CL:0000301'. biological_process owl:Class GO:0008683 biolink:NamedThing 2-oxoglutarate decarboxylase activity Catalysis of the reaction: 2-oxoglutarate + H(+) = CO(2) + succinate semialdehyde. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate carboxy-lyase activity|alpha-ketoglutaric decarboxylase activity|2-oxoglutarate carboxy-lyase (succinate-semialdehyde-forming)|pre-2-oxoglutarate decarboxylase activity|alpha-ketoglutarate decarboxylase activity RHEA:10524|MetaCyc:RXN-7774|EC:4.1.1.71|KEGG_REACTION:R00272 molecular_function owl:Class GO:0034531 biolink:NamedThing 2-hydroxy-4-hydroxymethylbenzalpyruvate hydratase-aldolase activity Catalysis of the reaction: 2-hydroxy-4-hydroxymethylbenzalpyruvate + H2O = pyruvate + 4-hydroxymethylsalicylaldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0766 molecular_function owl:Class GO:0106262 biolink:NamedThing 1-acylglycerophosphoethanolamine O-acyltransferase activity Catalysis of the reaction: a 1-acyl-sn-glycero-3-phosphoethanolamine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:32995 hjd 2020-05-18T15:09:57Z molecular_function owl:Class GO:1900548 biolink:NamedThing heme B catabolic process The chemical reactions and pathways resulting in the breakdown of heme b, a Fe(II) porphyrin complex readily isolated from the hemoglobin of beef blood, but also found in other proteins including other hemoglobins, myoglobins, cytochromes P-450, catalases, peroxidases as well as b type cytochromes. tmpzr1t_l9r_go_relaxed.owl protoheme catabolic process|heme B breakdown|heme B degradation|protoheme degradation|heme B catabolism MetaCyc:PWY-5874 pr 2012-05-14T12:35:18Z biological_process owl:Class GO:0046492 biolink:NamedThing heme B metabolic process The chemical reactions and pathways involving heme b, a Fe(II) porphyrin complex readily isolated from the hemoglobin of beef blood, but also found in other proteins including other hemoglobins, myoglobins, cytochromes P-450, catalases, peroxidases as well as b type cytochromes. tmpzr1t_l9r_go_relaxed.owl haem B metabolism|protoheme metabolism|heme B metabolism|haem B metabolic process|protoheme metabolic process biological_process owl:Class GO:0006425 biolink:NamedThing glutaminyl-tRNA aminoacylation The process of coupling glutamine to glutaminyl-tRNA, catalyzed by glutaminyl-tRNA synthetase. The glutaminyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031480 biolink:NamedThing myosin X complex A myosin complex containing one or more class X myosin heavy chains and associated light chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1901277 biolink:NamedThing tartrate biosynthetic process The chemical reactions and pathways resulting in the formation of tartrate. tmpzr1t_l9r_go_relaxed.owl tartrate anabolism|tartrate biosynthesis|tartrate synthesis|tartrate formation yaf 2012-08-17T14:52:48Z biological_process owl:Class GO:0018610 biolink:NamedThing dibenzofuran 4,4a-dioxygenase activity Catalysis of the reaction: dibenzofuran + NADH + H+ + O2 = 2,2',3-trihydroxybiphenyl + NAD+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0030|MetaCyc:R606-RXN|RHEA:42460 molecular_function owl:Class GO:0042169 biolink:NamedThing SH2 domain binding Binding to a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008831 biolink:NamedThing dTDP-4-dehydrorhamnose reductase activity Catalysis of the reaction: dTDP-6-deoxy-L-mannose + NADP(+) = dTDP-4-dehydro-6-deoxy-L-mannose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl dTDP-4-ketorhamnose reductase activity|thymidine diphospho-4-ketorhamnose reductase activity|TDP-4-keto-rhamnose reductase activity|dTDP-6-deoxy-L-mannose:NADP+ 4-oxidoreductase activity|dTDP-6-deoxy-L-mannose dehydrogenase activity|dTDP-4-keto-L-rhamnose reductase activity|reductase, thymidine diphospho-4-ketorhamnose RHEA:21796|MetaCyc:DTDPDEHYRHAMREDUCT-RXN|EC:1.1.1.133|KEGG_REACTION:R02777 molecular_function owl:Class GO:0047200 biolink:NamedThing tetrahydrodipicolinate N-acetyltransferase activity Catalysis of the reaction: (S)-2,3,4,5-tetrahydrodipicolinate + acetyl-CoA + H(2)O = L-2-acetamido-6-oxopimelate + CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:(S)-2,3,4,5-tetrahydrodipicolinate-2,6-dicarboxylate N2-acetyltransferase activity|tetrahydrodipicolinate:acetyl-CoA acetyltransferase activity|acetyl-CoA:L-2,3,4,5-tetrahydrodipicolinate N2-acetyltransferase activity|tetrahydrodipicolinate acetylase activity|acetyl-CoA:(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate 2-N-acetyltransferase activity MetaCyc:2.3.1.89-RXN|KEGG_REACTION:R04364|RHEA:13085|EC:2.3.1.89 molecular_function owl:Class GO:0018847 biolink:NamedThing alpha-pinene lyase activity Catalysis of the reaction: alpha-pinene = limonene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0712|EC:5.5.1.- molecular_function owl:Class GO:0007228 biolink:NamedThing positive regulation of hh target transcription factor activity Any process that increases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates, members of the Gli protein family are activated in this way. Activation of the Gli/Ci transcription factor is distinct from its stabilization, when proteolytic cleavage is inhibited. tmpzr1t_l9r_go_relaxed.owl positive regulation of hedgehog target transcription factor|activation of hh target transcription factor biological_process owl:Class GO:1901545 biolink:NamedThing response to raffinose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a raffinose stimulus. tmpzr1t_l9r_go_relaxed.owl al 2012-10-26T14:32:23Z biological_process owl:Class GO:0045679 biolink:NamedThing regulation of R8 cell differentiation Any process that modulates the frequency, rate or extent of R8 differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016217 biolink:NamedThing N-ethylammeline chlorohydrolase activity Catalysis of the reaction: deethylsimazine + H2O = N-ethylammeline + chloride + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R465-RXN molecular_function owl:Class GO:0009756 biolink:NamedThing carbohydrate mediated signaling A series of molecular signals mediated by the detection of carbohydrate. tmpzr1t_l9r_go_relaxed.owl carbohydrate mediated signalling biological_process owl:Class GO:0010296 biolink:NamedThing prenylcysteine methylesterase activity Catalysis of the reaction: protein C-terminal S-farnesyl-L-cysteine methyl ester + H2O = protein C-terminal S-farnesyl-L-cysteine + methanol + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8409|RHEA:48520 molecular_function owl:Class GO:0004106 biolink:NamedThing chorismate mutase activity Catalysis of the reaction: chorismate = prephenate. tmpzr1t_l9r_go_relaxed.owl chorismate pyruvatemutase activity|hydroxyphenylpyruvate synthase activity KEGG_REACTION:R01715|RHEA:13897|MetaCyc:CHORISMATEMUT-RXN|EC:5.4.99.5 molecular_function owl:Class GO:0018082 biolink:NamedThing peptidyl-(Z)-dehydrobutyrine biosynthetic process from peptidyl-threonine The formation of (Z)-dehydrobutyrine by the dehydration of peptidyl-threonine. tmpzr1t_l9r_go_relaxed.owl peptidyl-(Z)-dehydrobutyrine formation from peptidyl-threonine|peptidyl-(Z)-dehydrobutyrine anabolism from peptidyl-threonine|peptidyl-(Z)-dehydrobutyrine synthesis from peptidyl-threonine RESID:AA0182 biological_process owl:Class GO:0007508 biolink:NamedThing larval heart development The process whose specific outcome is the progression of the larval heart over time, from its formation to the mature structure. In Drosophila the larval heart (dorsal vessel) is a continuous tube of mesodormal cells that runs beneath the dorsal midline of the epidermis, divided into an anterior aorta and a posterior heart proper. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097389 biolink:NamedThing chemokine (C-C motif) ligand 21 production The appearance of chemokine (C-C motif) ligand 21 (CCL21) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL21 production pr 2012-10-23T07:56:26Z biological_process owl:Class GO:0003396 biolink:NamedThing cell adhesion involved in amphid sensory organ dendrite retrograde extension The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension of a dendrite in a neuron of the amphid sensory organ. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T09:50:18Z biological_process owl:Class GO:1903412 biolink:NamedThing response to bile acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bile acid stimulus. tmpzr1t_l9r_go_relaxed.owl rl 2014-09-03T12:45:43Z biological_process owl:Class GO:0080077 biolink:NamedThing trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a trihydroxyferuloyl spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T04:00:45Z molecular_function owl:Class GO:1990893 biolink:NamedThing mitotic chromosome centromere condensation The cell cycle process in which centromere chromatin structure is compacted prior to and during mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic chromosome condensation at kinetochore vw 2015-11-03T14:26:29Z biological_process owl:Class GO:1901936 biolink:NamedThing beta-caryophyllene catabolic process The chemical reactions and pathways resulting in the breakdown of beta-caryophyllene. tmpzr1t_l9r_go_relaxed.owl beta-caryophyllene degradation|beta-caryophyllene catabolism|beta-caryophyllene breakdown ms 2013-02-18T14:55:13Z biological_process owl:Class GO:0034513 biolink:NamedThing box H/ACA snoRNA binding Binding to a box H/ACA small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033853 biolink:NamedThing aspartate-prephenate aminotransferase activity Catalysis of the reaction: L-arogenate + oxaloacetate = prephenate + L-aspartate. tmpzr1t_l9r_go_relaxed.owl PAT|L-aspartate:prephenate aminotransferase activity|prephenate transaminase activity|prephenate aspartate aminotransferase activity|L-arogenate:oxaloacetate aminotransferase activity EC:2.6.1.78|RHEA:20445|MetaCyc:PREPHENATE-ASP-TRANSAMINE-RXN molecular_function owl:Class GO:1902497 biolink:NamedThing iron-sulfur cluster transmembrane transport A process in which an iron-sulfur cluster is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl iron-sulfur cluster transport dph 2013-11-13T16:33:00Z biological_process owl:Class GO:0098782 biolink:NamedThing mechanosensitived potassium channel activity Enables the transmembrane transfer of a potassium ion by a channel that opens in response to a mechanical stress. tmpzr1t_l9r_go_relaxed.owl mechanically-gated potassium channel activity molecular_function owl:Class GO:0038019 biolink:NamedThing Wnt receptor recycling The process that results in the return of a Wnt receptor to an active state at the plasma membrane. An active state is when the receptor is ready to receive a Wnt signal. Internalized Wnt receptors can be recycled to the plasma membrane or sorted to lysosomes for protein degradation. tmpzr1t_l9r_go_relaxed.owl Frizzled recycling bf 2011-06-23T04:46:11Z biological_process owl:Class GO:0015762 biolink:NamedThing rhamnose transmembrane transport The process in which rhamnose is transported across a lipid bilayer, from one side of a membrane to the other. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids. tmpzr1t_l9r_go_relaxed.owl rhamnose transport biological_process owl:Class GO:2001087 biolink:NamedThing sophorose transport The directed movement of a sophoroseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T12:58:08Z biological_process owl:Class GO:0018745 biolink:NamedThing epoxide hydrolase A activity Catalysis of the hydrolysis of the ether in chloro-, bromo- or hydroxyepoxypropane to produce a chloro- or bromopropane diol or glycerol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0049|EC:3.3.2.- molecular_function owl:Class GO:0070068 biolink:NamedThing VAMP4-syntaxin-6-syntaxin-16-Vti1a complex A SNARE complex that contains VAMP4, syntaxin 6, syntaxin 16, and Vti1a (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Vamp4-Stx6-Stx16-Vti1a complex|SNARE complex (Vamp4, Stx6, Stx16, Vti1a) cellular_component owl:Class GO:0010012 biolink:NamedThing steroid 22-alpha hydroxylase activity Catalysis of the reaction: 5-alpha-campestanaol + O2 = 6-deoxocathasterone + H2O. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097474 biolink:NamedThing retinal cone cell apoptotic process Any apoptotic process in a retinal cone cell, one of the two photoreceptor cell types of the vertebrate retina. tmpzr1t_l9r_go_relaxed.owl cone photoreceptor apoptotic process pr 2013-03-21T09:46:22Z biological_process owl:Class GO:0098533 biolink:NamedThing ATPase dependent transmembrane transport complex A transmembrane protein complex that functions in ATPase dependent active transport across a membrane. tmpzr1t_l9r_go_relaxed.owl The location of this complex is implicit in its activity, so its location is asserted as a regular relationship rather than as a part of an intersection. dos 2013-10-22T12:12:52Z cellular_component owl:Class GO:0052682 biolink:NamedThing epi-cedrol synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + H2O = epi-cedrol + diphosphate. tmpzr1t_l9r_go_relaxed.owl epicedrol synthase activity|8-epicedrol synthase activity|(2E,6E)-farnesyl-diphosphate diphosphate-lyase (8-epi-cedrol-forming) activity KEGG_REACTION:R09140|EC:4.2.3.39|RHEA:26115|MetaCyc:RXN-10004 molecular_function owl:Class GO:0015702 biolink:NamedThing chlorate transport The directed movement of chlorate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0085017 biolink:NamedThing entry into host cell by a symbiont-containing vacuole The invasion by a symbiont of a cell of a host organism, forming a vacuole in which the symbiont resides. The vacuole membrane is formed from lipids and proteins derived from both host and symbiont. Begins when the symbiont attaches on to the host cell membrane which invaginates and deepens as the symbiont enters, and ends when the host cell membrane closes behind the newly-formed vacuole. tmpzr1t_l9r_go_relaxed.owl symbiont entry into host cell forming a parasitophorous vacuole|symbiont entry into host cell forming a symbiont-containing vacuole|symbiont entry into host cell forming a pathogen-containing vacuole jl 2010-05-20T02:55:34Z GO:0052370 biological_process owl:Class GO:0047355 biolink:NamedThing CDP-glycerol glycerophosphotransferase activity Catalysis of the reaction: glycerophosphate(n) + CDP-glycerol = glycerophosphate(n+1) + CMP. tmpzr1t_l9r_go_relaxed.owl CDPglycerol glycerophosphotransferase activity|poly(glycerol phosphate) polymerase activity|cytidine diphosphoglycerol glycerophosphotransferase activity|teichoic-acid synthase activity|teichoic acid glycerol transferase activity|glycerophosphate synthetase activity|CGPTase activity|CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase activity MetaCyc:2.7.8.12-RXN|RHEA:13565|EC:2.7.8.12 molecular_function owl:Class GO:1901115 biolink:NamedThing erythromycin biosynthetic process The chemical reactions and pathways resulting in the formation of erythromycin. tmpzr1t_l9r_go_relaxed.owl erythromycin biosynthesis|erythromycin synthesis|erythromycin anabolism|erythromycin formation yaf 2012-07-11T03:06:46Z biological_process owl:Class GO:0050440 biolink:NamedThing 2-methylcitrate synthase activity Catalysis of the reaction: H(2)O + oxaloacetate + propanoyl-CoA = (2R,3S)-2-methylcitrate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl methylcitrate synthase activity|2-methylcitrate oxaloacetate-lyase activity|methylcitrate synthetase activity|propanoyl-CoA:oxaloacetate C-propanoyltransferase (thioester-hydrolysing, 1-carboxyethyl-forming)|MCS activity MetaCyc:2-METHYLCITRATE-SYNTHASE-RXN|RHEA:23780|KEGG_REACTION:R00931|EC:2.3.3.5 molecular_function owl:Class GO:0046981 biolink:NamedThing beta-1,4-mannosylglycolipid beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the transfer of N-acetylglucosamine (GlcNAc) in a beta-1,3 linkage to the mannose(beta-1,4)Glc disaccharide core of glycolipids. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine:beta-D-mannosyl-glycolipid beta-1,3-N-acetylglucosaminyltransferase activity molecular_function owl:Class GO:1990617 biolink:NamedThing CHOP-ATF4 complex A heterodimeric transcription factor complex that is composed of CHOP (C/EBP homology protein, GADD153) and ATF4 (activating transcription factor 4, also known as cAMP response element binding protein-2/CREB-2) subunits. tmpzr1t_l9r_go_relaxed.owl ATF4-CHOP heterodimer|CHOP-CREB-2 complex|CHOP-ATF4 heterodimer|GADD153-ATF4 complex|CHOP/ATF4 complex bf 2015-01-22T11:29:51Z cellular_component owl:Class GO:0030107 biolink:NamedThing HLA-A specific inhibitory MHC class I receptor activity Combining with a MHC class I molecule of the HLA-A subclass to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048772 biolink:NamedThing leucophore differentiation The process in which a relatively unspecialized cell acquires the specialized features of a leucophore cell. Leucophores are pigment cells derived from the neural crest. They contain uric acid or other purine crystals, deposited in stacks called leucosomes. This gives them a white appearance. tmpzr1t_l9r_go_relaxed.owl leucophore cell differentiation biological_process owl:Class GO:0097366 biolink:NamedThing response to bronchodilator Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bronchodilator stimulus. A bronchodilator is a chemical that causes an increase in the expansion of a bronchus or bronchial tubes. tmpzr1t_l9r_go_relaxed.owl response to broncholytic agent|response to bronchodilator agent Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. pr 2012-08-01T16:13:31Z biological_process owl:Class GO:1990805 biolink:NamedThing central cylinder A scaffolding structure present within the inner region of the ciliary transition zone. The central cylinder lies between the outer doublet and inner singlet microtubules. tmpzr1t_l9r_go_relaxed.owl kmv 2015-07-17T17:48:17Z cellular_component owl:Class GO:0002947 biolink:NamedThing tumor necrosis factor receptor superfamily complex A receptor complex that contains one or more members of the tumor necrosis factor (TNF) receptor superfamily. tmpzr1t_l9r_go_relaxed.owl TNF receptor superfamily complex hjd 2012-12-20T13:26:39Z cellular_component owl:Class GO:0006683 biolink:NamedThing galactosylceramide catabolic process The chemical reactions and pathways resulting in the breakdown of galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl galactosylceramide catabolism|galactosylceramide degradation|galactosylceramide breakdown biological_process owl:Class GO:0102157 biolink:NamedThing (R)-sulfopropanediol 2-dehydrogenase activity Catalysis of the reaction: (2R)-3-sulfopropanediol(1-) + NAD <=> 2-oxo-3-hydroxy-propane-1-sulfonate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11729 molecular_function owl:Class GO:0050225 biolink:NamedThing pseudouridine kinase activity Catalysis of the reaction: ATP + pseudouridine = ADP + 2 H(+) + pseudouridine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:pseudouridine 5'-phosphotransferase activity|pseudouridine kinase (phosphorylating) RHEA:22448|KEGG_REACTION:R03315|MetaCyc:PSEUDOURIDINE-KINASE-RXN|EC:2.7.1.83 molecular_function owl:Class GO:0050661 biolink:NamedThing NADP binding Binding to nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. tmpzr1t_l9r_go_relaxed.owl NADP or NADPH binding|nicotinamide adenine dinucleotide phosphate binding|NADP+ or NADPH binding molecular_function owl:Class GO:0071576 biolink:NamedThing tetrahydrodictyopterin binding Binding to tetrahydrodictyopterin, the pterin 2-amino-6-[(1R,2R)-1,2-dihydroxypropyl]-5,6,7,8-tetrahydropteridin-4(3H)-one. tmpzr1t_l9r_go_relaxed.owl D-threo-tetrahydrobiopterin|DH4 binding mah 2010-01-26T05:24:59Z molecular_function owl:Class GO:0008788 biolink:NamedThing alpha,alpha-phosphotrehalase activity Catalysis of the reaction: alpha,alpha-trehalose 6-phosphate + H2O = D-glucose + D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl trehalose-6-phosphate hydrolase activity|alpha,alpha-trehalose-6-phosphate phosphoglucohydrolase activity|phosphotrehalase activity MetaCyc:TRE6PHYDRO-RXN|EC:3.2.1.93|RHEA:23008 molecular_function owl:Class GO:0044417 biolink:NamedThing translocation of molecules into host The directed movement of a molecule(s) produced by an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl translocation of molecules into other organism during symbiotic interaction|transport of molecules into other organism during symbiotic interaction|translocation of molecules into other organism involved in symbiotic interaction|transport of molecules into host GO:0051836 biological_process owl:Class GO:0046265 biolink:NamedThing thiocyanate catabolic process The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid. tmpzr1t_l9r_go_relaxed.owl thiocyanate degradation|thiocyanate breakdown|thiocyanate catabolism biological_process owl:Class GO:0150142 biolink:NamedThing positive regulation of CD86 production Any process that activates or increases the frequency, rate or extent of CD86 biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of CD86 biosynthetic process bc 2019-12-08T09:35:35Z biological_process owl:Class GO:0031412 biolink:NamedThing gas vesicle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a gas vesicle. A gas vesicle is a hollow structure made of protein, which usually has the form of a cylindrical tube closed by conical end caps. tmpzr1t_l9r_go_relaxed.owl gas vesicle formation|gas vesicle organization and biogenesis|gas vesicle organisation|gas vesicle biosynthesis Note that although gas vesicles are commonly referred to as 'vesicles' or 'vacuoles' in the literature, they are not surrounded by a membrane. biological_process owl:Class GO:0017062 biolink:NamedThing respiratory chain complex III assembly The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex, a transmembrane lipoprotein complex that it catalyzes the reduction of cytochrome c by accepting reducing equivalents from Coenzyme Q, by the aggregation, arrangement and bonding together of its constituents. tmpzr1t_l9r_go_relaxed.owl cytochrome bc(1) complex assembly|coenzyme Q and cytochrome c reductase complex biogenesis|coenzyme Q and cytochrome c reductase complex assembly|complex III assembly|complex III biogenesis|cytochrome bc(1) complex biogenesis biological_process owl:Class GO:0004667 biolink:NamedThing prostaglandin-D synthase activity Catalysis of the reaction: prostaglandin H(2) = prostaglandin D(2). tmpzr1t_l9r_go_relaxed.owl prostaglandin D2 synthase activity|(5,13)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate D-isomerase activity|PGH-PGD isomerase activity|prostaglandin-R-prostaglandin D isomerase activity|prostaglandin-H2 D-isomerase activity|PGD2 synthase activity EC:5.3.99.2|MetaCyc:PROSTAGLANDIN-D-SYNTHASE-RXN|RHEA:10600|KEGG_REACTION:R02266|Reactome:R-HSA-2161701|Reactome:R-HSA-2161620 molecular_function owl:Class GO:0048487 biolink:NamedThing beta-tubulin binding Binding to the microtubule constituent protein beta-tubulin. tmpzr1t_l9r_go_relaxed.owl beta tubulin binding molecular_function owl:Class GO:0006265 biolink:NamedThing DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. tmpzr1t_l9r_go_relaxed.owl DNA underwinding Note that the synonym 'DNA underwinding' should not be confused with 'DNA unwinding ; GO:0006268', which refers to DNA strand separation, and is a type of geometric change. GO:0006265 refers to alteration of the superhelical density of double-stranded DNA. Note that DNA topological change and DNA geometric change (GO:0032392) are distinct, but are usually coupled in vivo. biological_process owl:Class GO:0070193 biolink:NamedThing synaptonemal complex organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synaptonemal complex. A synaptonemal complex is a proteinaceous scaffold formed between homologous chromosomes during meiosis. tmpzr1t_l9r_go_relaxed.owl synaptonemal complex organisation biological_process owl:Class GO:0061816 biolink:NamedThing proteaphagy The selective autophagy process that clears 26S proteasomes; homeostatic mechanism within the ubiquitin system that modulates proteolytic capacity and eliminates damaged particles. tmpzr1t_l9r_go_relaxed.owl dph 2016-12-01T20:21:28Z biological_process owl:Class GO:0090687 biolink:NamedThing activation of meiosis I spindle assembly checkpoint Any process that starts the inactive process of a meiosis I cell cycle spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl tb 2016-07-20T16:49:17Z biological_process owl:Class GO:0043398 biolink:NamedThing HLH domain binding Binding to a Helix Loop Helix domain, a domain of 40-50 residues that occurs in specific DNA-binding proteins that act as transcription factors. The domain is formed of two amphipathic helices joined by a variable length linker region that can form a loop and it mediates protein dimerization. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0032444 biolink:NamedThing activin responsive factor complex A transcriptionally active complex that binds to an activin response element (ARE) in the promoter of target genes, and is composed of two SMAD2 proteins, one SMAD4 protein and a Forkhead activin signal transducer (FAST) transcription factor. tmpzr1t_l9r_go_relaxed.owl ARF complex Note that this term should not be confused with any of the molecular function and biological process terms that refer to the small GTPase ARF (ADP-ribosylation factor). cellular_component owl:Class GO:0009248 biolink:NamedThing K antigen biosynthetic process The chemical reactions and pathways resulting in the formation of a K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens. tmpzr1t_l9r_go_relaxed.owl K antigen synthesis|K antigen formation|K antigen biosynthesis|K antigen anabolism biological_process owl:Class GO:1903920 biolink:NamedThing positive regulation of actin filament severing Any process that activates or increases the frequency, rate or extent of actin filament severing. tmpzr1t_l9r_go_relaxed.owl positive regulation of F-actin severing|upregulation of actin filament severing|up regulation of actin filament severing|upregulation of F-actin severing|upregulation of actin filament severing activity|activation of actin filament severing|positive regulation of actin filament severing activity|activation of barbed-end actin capping/severing activity|upregulation of barbed-end actin capping/severing activity|up-regulation of F-actin severing|up regulation of actin filament severing activity|up-regulation of actin filament severing activity|up-regulation of actin filament severing|up regulation of barbed-end actin capping/severing activity|activation of F-actin severing|positive regulation of barbed-end actin capping/severing activity|up regulation of F-actin severing|up-regulation of barbed-end actin capping/severing activity|activation of actin filament severing activity als 2015-02-10T11:01:40Z biological_process owl:Class GO:1905006 biolink:NamedThing negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation Any process that stops, prevents or reduces the frequency, rate or extent of epithelial to mesenchymal transition involved in endocardial cushion formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of epithelial to mesenchymal transition involved in endocardial cushion formation|inhibition of epithelial to mesenchymal transition involved in endocardial cushion formation|downregulation of epithelial to mesenchymal transition involved in endocardial cushion formation|down regulation of epithelial to mesenchymal transition involved in endocardial cushion formation rl 2016-03-01T15:38:47Z biological_process owl:Class GO:0002950 biolink:NamedThing ceramide phosphoethanolamine synthase activity Catalysis of the reaction: CDP-ethanolamine + a ceramide = CMP + a ceramide phosphoethanolamine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8959462 hjd 2016-08-16T13:41:21Z molecular_function owl:Class GO:1903486 biolink:NamedThing establishment of mitotic actomyosin contractile ring localization Any establishment of actomyosin contractile ring localization that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl establishment of actomyosin contractile ring localization involved in mitotic cell cycle vw 2014-09-23T16:17:09Z biological_process owl:Class GO:0080104 biolink:NamedThing 5-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 5-methylthiopropyl-glucosinolate = 5-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T04:28:25Z molecular_function owl:Class GO:0030744 biolink:NamedThing luteolin O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + luteolin = 4',5,7-trihydroxy-3'-methoxyflavone + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl luteolin 3'-O-methyltransferase activity|S-adenosylmethionine:flavone/flavonol 3'-O-methyltransferase activity|o-dihydric phenol meta-O-methyltransferase activity|o-dihydric phenol methyltransferase activity|luteolin methyltransferase activity|o-diphenol m-O-methyltransferase activity|S-adenosyl-L-methionine:5,7,3',4'-tetrahydroxyflavone 3'-O-methyltransferase activity RHEA:14589|MetaCyc:LUTEOLIN-O-METHYLTRANSFERASE-RXN|KEGG_REACTION:R03587|EC:2.1.1.42 molecular_function owl:Class GO:0106033 biolink:NamedThing spine synapse A type of synapse occurring between an axon and a dendritic spine. tmpzr1t_l9r_go_relaxed.owl dendritic spine synapse hjd 2017-07-05T19:20:48Z cellular_component owl:Class GO:0102051 biolink:NamedThing indole-3-acetyl-tryptophan synthetase activity Catalysis of the reaction: indole-3-acetate + L-tryptophan + ATP(4-) <=> H+ + indole-3-acetyl-tryptophan + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10433 molecular_function owl:Class GO:0034373 biolink:NamedThing intermediate-density lipoprotein particle remodeling The acquisition, loss or modification of a protein or lipid within an intermediate-density lipoprotein particle. tmpzr1t_l9r_go_relaxed.owl LDL formation|IDL remodeling|low-density lipoprotein particle formation biological_process owl:Class GO:0019714 biolink:NamedThing peptidyl-glutamine esterification The addition of an ester group to a glutamine residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018070 biolink:NamedThing peptidyl-serine phosphopantetheinylation The phosphopantetheinylation of peptidyl-serine to form peptidyl-O-phosphopantetheine-L-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0150 biological_process owl:Class GO:0045735 biolink:NamedThing nutrient reservoir activity Functions in the storage of nutritious substrates. tmpzr1t_l9r_go_relaxed.owl yolk protein|storage protein of fat body|storage protein Note that this term can be used in place of the obsolete terms 'storage protein ; GO:0005187' and 'storage protein of fat body (sensu Insecta) ; GO:0008041'. molecular_function owl:Class GO:0043953 biolink:NamedThing protein transport by the Tat complex The process in which folded proteins are transported across cytoplasmic membranes of bacteria and membranes of organelles derived from bacteria (chloroplasts and mitochondria) by the TAT complex. tmpzr1t_l9r_go_relaxed.owl protein translocation by the twin-arginine translocation complex|protein translocation by the TAT complex|twin-arginine translocation pathway|protein secretion by the TAT complex Note that this term represents an activity and not a cellular structure. Consider also annotating to the cellular structure term 'TAT protein translocation system complex ; GO:0033281'. Note that this term is used for annotation of proteins that compose the transport complex but not the proteins being transported. biological_process owl:Class GO:0019933 biolink:NamedThing cAMP-mediated signaling Any intracellular signal transduction in which the signal is passed on within the cell via cyclic AMP (cAMP). Includes production of cAMP, and downstream effectors that further transmit the signal within the cell. tmpzr1t_l9r_go_relaxed.owl cAMP-mediated signal transduction|cAMP-mediated signalling|adenosine 3',5'-cyclophosphate-mediated signaling|cAMP signalling|3',5'-cAMP-mediated signaling|cyclic AMP-mediated signaling|cyclic AMP-mediated signalling|3',5' cAMP-mediated signaling|3',5'-cAMP-mediated signalling|3',5' cAMP-mediated signalling|adenosine 3',5'-cyclophosphate-mediated signalling|cAMP signaling biological_process owl:Class GO:0008659 biolink:NamedThing (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity Catalysis of the reaction: (3R)-3-hydroxytetradecanoyl-[acyl-carrier protein] = tetradecenoyl-[acyl-carrier protein] + H2O. tmpzr1t_l9r_go_relaxed.owl (3R)-hydroxymyristoyl-[acyl-carrier protein] dehydratase activity|(3R)-hydroxymyristoyl-ACP dehydratase activity RHEA:41892|EC:4.2.1.59 molecular_function owl:Class GO:0072354 biolink:NamedThing histone kinase activity (H3-T3 specific) Catalysis of the transfer of a phosphate group to the threonine-3 residue of the N-terminal tail of histone H3. tmpzr1t_l9r_go_relaxed.owl histone threonine kinase activity (H3-T3 specific)|histone-threonine kinase activity (H3-T3 specific) mah 2010-11-12T04:27:57Z molecular_function owl:Class GO:1900927 biolink:NamedThing negative regulation of L-threonine import across plasma membrane Any process that stops, prevents or reduces the frequency, rate or extent of L-threonine import into cell. tmpzr1t_l9r_go_relaxed.owl down-regulation of L-threonine import|downregulation of L-threonine uptake|inhibition of L-threonine uptake|down regulation of L-threonine uptake|inhibition of L-threonine import|downregulation of L-threonine import|negative regulation of L-threonine uptake|down regulation of L-threonine import|down-regulation of L-threonine uptake al 2012-06-13T07:41:52Z biological_process owl:Class GO:0047180 biolink:NamedThing salutaridinol 7-O-acetyltransferase activity Catalysis of the reaction: (7S)-salutaridinol + acetyl-CoA = (7S)-O-acetylsalutaridinol + CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:salutaridinol 7-O-acetyltransferase activity EC:2.3.1.150|KEGG_REACTION:R04723|MetaCyc:2.3.1.150-RXN|RHEA:22856 molecular_function owl:Class GO:0003861 biolink:NamedThing 3-isopropylmalate dehydratase activity Catalysis of the reaction: (2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate. tmpzr1t_l9r_go_relaxed.owl isopropylmalate isomerase activity|(2R,3S)-3-isopropylmalate hydro-lyase activity|alpha-IPM isomerase activity|beta-isopropylmalate dehydratase activity|alpha-isopropylmalate isomerase activity|(2R,3S)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming) MetaCyc:3-ISOPROPYLMALISOM-RXN|RHEA:32287|EC:4.2.1.33 molecular_function owl:Class GO:0035101 biolink:NamedThing FACT complex An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer. tmpzr1t_l9r_go_relaxed.owl Facilitates chromatin transcription complex https://github.com/geneontology/go-ontology/issues/19572 cellular_component owl:Class GO:0003292 biolink:NamedThing cardiac septum cell differentiation The process in which an endocardial cushion cell becomes a cell of a cardiac septum. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T11:03:46Z biological_process owl:Class GO:0004435 biolink:NamedThing phosphatidylinositol phospholipase C activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl phosphoinositidase C activity|1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase activity|1-phosphatidyl-D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase activity|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase activity|triphosphoinositide phosphodiesterase activity|phosphoinositide phospholipase C activity|monophosphatidylinositol phosphodiesterase activity|phosphatidylinositol-4,5-bisphosphate hydrolysis|PI-PLC activity Reactome:R-HSA-9032478|EC:3.1.4.11|Reactome:R-HSA-1855214|Reactome:R-HSA-111879|RHEA:33179|Reactome:R-HSA-1855177|MetaCyc:3.1.4.11-RXN|Reactome:R-HSA-2730847|Reactome:R-HSA-202407|Reactome:R-HSA-167686|Reactome:R-HSA-1855221|Reactome:R-HSA-622382|KEGG_REACTION:R03435|Reactome:R-HSA-5607735 molecular_function owl:Class GO:0030782 biolink:NamedThing (S)-tetrahydroprotoberberine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (S)-7,8,13,14-tetrahydroprotoberberine = S-adenosyl-L-homocysteine + cis-N-methyl-(S)-7,8,13,14-tetrahydroprotoberberine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(S)-7,8,13,14-tetrahydroprotoberberine cis-N-methyltransferase activity|tetrahydroprotoberberine cis-N-methyltransferase activity RHEA:12805|MetaCyc:2.1.1.122-RXN|EC:2.1.1.122 molecular_function owl:Class GO:0103096 biolink:NamedThing CYP79F1 dihomomethionine monooxygenase activity Catalysis of the reaction: dihomomethionine + 2 O2 + 2 NADPH + 2 H+ <=> 5-methylthiopentanaldoxime + 3 H2O + carbon dioxide + 2 NADP. tmpzr1t_l9r_go_relaxed.owl RHEA:32719|MetaCyc:RXNQT-4309 molecular_function owl:Class GO:0010216 biolink:NamedThing maintenance of DNA methylation Any process involved in maintaining the methylation state of a nucleotide sequence. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990727 biolink:NamedThing tubulin folding cofactor complex A multimeric protein complex involved in tubulin alpha-beta-subunit folding assembly consisting of beta-tubulin-TFC-D, alpha-tubulin-TFC-E and TFC-C, through which tubulin subunit association and dimer release occur. tmpzr1t_l9r_go_relaxed.owl pr 2015-04-08T10:29:43Z cellular_component owl:Class GO:0060903 biolink:NamedThing positive regulation of meiosis I Any process that increases the rate, frequency, or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-14T01:06:57Z biological_process owl:Class GO:0018462 biolink:NamedThing 4-(hydroxymethyl)benzenesulfonate dehydrogenase activity Catalysis of the reaction: 4-(hydroxymethyl)benzenesulfonate + NAD(+) = 4-formylbenzenesulfonate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 4-(hydroxymethyl)benzenesulfonate:NAD+ oxidoreductase activity|4-(hydroxymethyl)benzenesulphonate dehydrogenase activity|4-sulfobenzyl alcohol dehydrogenase activity KEGG_REACTION:R05271|RHEA:24412|UM-BBD_reactionID:r0291|MetaCyc:1.1.1.257-RXN|EC:1.1.1.257 molecular_function owl:Class GO:0034677 biolink:NamedThing integrin alpha7-beta1 complex An integrin complex that comprises one alpha7 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha7-beta1 integrin complex|ITGA7-ITGB1 complex cellular_component owl:Class GO:1900647 biolink:NamedThing negative regulation of chanoclavine-I aldehyde biosynthetic process Any process that stops, prevents or reduces the frequency, rate or extent of chanoclavine-I aldehyde biosynthetic process. tmpzr1t_l9r_go_relaxed.owl down regulation of chanoclavine-I aldehyde formation|downregulation of chanoclavine-I aldehyde formation|inhibition of chanoclavine-I aldehyde synthesis|inhibition of chanoclavine-I aldehyde biosynthesis|inhibition of chanoclavine-I aldehyde anabolism|downregulation of chanoclavine-I aldehyde biosynthetic process|down-regulation of chanoclavine-I aldehyde biosynthetic process|inhibition of chanoclavine-I aldehyde biosynthetic process|down regulation of chanoclavine-I aldehyde biosynthetic process|down-regulation of chanoclavine-I aldehyde formation|inhibition of chanoclavine-I aldehyde formation|negative regulation of chanoclavine-I aldehyde formation|negative regulation of chanoclavine-I aldehyde biosynthesis|downregulation of chanoclavine-I aldehyde anabolism|down regulation of chanoclavine-I aldehyde synthesis|downregulation of chanoclavine-I aldehyde synthesis|down regulation of chanoclavine-I aldehyde anabolism|negative regulation of chanoclavine-I aldehyde synthesis|down-regulation of chanoclavine-I aldehyde synthesis|down regulation of chanoclavine-I aldehyde biosynthesis|down-regulation of chanoclavine-I aldehyde anabolism|down-regulation of chanoclavine-I aldehyde biosynthesis|negative regulation of chanoclavine-I aldehyde anabolism|downregulation of chanoclavine-I aldehyde biosynthesis di 2012-05-22T04:04:59Z biological_process owl:Class GO:0098768 biolink:NamedThing meiotic prometaphase I The meiotic cell cycle phase in eukaryotes between meiotic prophase I and meiotic metaphase I. During meiotic prometaphase I, the nuclear envelope breaks down and one kinetochore forms per chromosome. Chromosomes attach to spindle microtubules and begin to move towards the metaphase plate. tmpzr1t_l9r_go_relaxed.owl This term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation should be to 'regulation of x/y phase transition' or to a process which occurs during the reported phase (e.g. mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0070581 biolink:NamedThing rolling circle DNA replication A DNA-dependent DNA replication process in which a single-stranded DNA molecule is synthesized from a circular duplex template. Replication typically does not cease when one circumference has been replicated, but continues around the circumference several more times, producing a long single strand comprising multimers of the replicon. tmpzr1t_l9r_go_relaxed.owl rolling circle replication mah 2009-04-22T02:53:52Z biological_process owl:Class GO:0009432 biolink:NamedThing SOS response An error-prone process for repairing damaged microbial DNA. tmpzr1t_l9r_go_relaxed.owl Wikipedia:SOS_response biological_process owl:Class GO:0015155 biolink:NamedThing lactose transmembrane transporter activity Enables the transfer of lactose from one side of a membrane to the other. Lactose is a disaccharide 4-O-beta-D-galactopyranosyl-D-glucose, and constitutes roughly 5% of the milk in almost all mammals. tmpzr1t_l9r_go_relaxed.owl lactose/glucose efflux transporter activity|lactose permease activity GO:0019189 molecular_function owl:Class GO:0018763 biolink:NamedThing hydroxydechloroatrazine ethylaminohydrolase activity Catalysis of the reaction: 4-(ethylamino)-2-hydroxy-6-(isopropylamino)-1,3,5-triazine + H2O = N-isopropylammelide + ethylamine. tmpzr1t_l9r_go_relaxed.owl hydroxyatrazine ethylaminohydrolase activity|AtzB|4-(ethylamino)-2-hydroxy-6-(isopropylamino)-1,3,5-triazine ethylaminohydrolase activity|hydroxyatrazine hydrolase activity RHEA:23092|UM-BBD_enzymeID:e0085|EC:3.5.4.43|MetaCyc:R122-RXN molecular_function owl:Class GO:0006847 biolink:NamedThing plasma membrane acetate transport The directed movement of acetate across a plasma membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031530 biolink:NamedThing gonadotropin-releasing hormone receptor binding Binding to a receptor for gonadotropin-releasing hormone (GnRH), a peptide hormone that is synthesized and released by the hypothalamus and is responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl GnRH receptor binding|gonadotrophin-releasing hormone receptor binding molecular_function owl:Class GO:0050100 biolink:NamedThing methylitaconate delta-isomerase activity Catalysis of the reaction: 2-methylene-3-methylsuccinate = dimethylmaleate. tmpzr1t_l9r_go_relaxed.owl methylitaconate D-isomerase activity|methylitaconate isomerase activity|methylitaconate delta2-delta3-isomerase activity MetaCyc:METHYLITACONATE-DELTA-ISOMERASE-RXN|EC:5.3.3.6|RHEA:23480|KEGG_REACTION:R03070 molecular_function owl:Class GO:0098757 biolink:NamedThing cellular response to interleukin-21 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-21 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-21 biological_process owl:Class GO:0098756 biolink:NamedThing response to interleukin-21 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-21 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-21 biological_process owl:Class GO:1990038 biolink:NamedThing Lewy body corona The periphery of a Lewy body. In Parkinson's disease, it contains spherical accumulations of filaments arranged in a loose, radiating array. tmpzr1t_l9r_go_relaxed.owl halo NIF_Subcellular:sao5764355747 pr 2013-02-08T13:03:27Z cellular_component owl:Class GO:0048535 biolink:NamedThing lymph node development The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes. tmpzr1t_l9r_go_relaxed.owl lymph gland development biological_process owl:Class GO:0120043 biolink:NamedThing stereocilium shaft The shaft comprises the majority of the length of the stereocilium. This region is notable for the extreme stability of actin filaments, which are highly crosslinked into a parallel bundle. tmpzr1t_l9r_go_relaxed.owl krc 2017-05-15T20:38:32Z cellular_component owl:Class GO:0050144 biolink:NamedThing nucleoside deoxyribosyltransferase activity Catalysis of the reaction: 2-deoxy-D-ribosyl-base1 + base2 = 2-deoxy-D-ribosyl-base2 + base1. tmpzr1t_l9r_go_relaxed.owl nucleoside deoxyribosyltransferase II [purine(pyrimidine) nucleoside:purine(pyrimidine) deoxyribosyltransferase]|purine(pyrimidine) nucleoside:purine(pyrimidine) deoxyribosyl transferase activity|trans-deoxyribosylase activity|nucleoside trans-N-deoxyribosylase activity|nucleoside:purine(pyrimidine) deoxy-D-ribosyltransferase activity|nucleoside deoxyribosyltransferase I (purine nucleoside:purine deoxyribosyltransferase: strictly specific for transfer between purine bases)|deoxyribose transferase activity|trans-N-deoxyribosylase activity|trans-N-glycosidase activity MetaCyc:NUCLEOSIDE-DEOXYRIBOSYLTRANSFERASE-RXN|EC:2.4.2.6 molecular_function owl:Class GO:0050039 biolink:NamedThing lactaldehyde reductase (NADPH) activity Catalysis of the reaction: NADP(+) + propane-1,2-diol = (S)-lactaldehyde + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 1,2-propanediol:NADP+ oxidoreductase activity|propanediol dehydrogenase activity|propane-1,2-diol:NADP+ oxidoreductase activity|lactaldehyde (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|NADP-1,2-propanediol dehydrogenase activity EC:1.1.1.55|MetaCyc:LACTALDEHYDE-REDUCTASE-NADPH-RXN|KEGG_REACTION:R02259|RHEA:15885 molecular_function owl:Class GO:0018269 biolink:NamedThing GPI anchor biosynthetic process via N-seryl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-serine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a seryl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor anabolism via N-seryl-glycosylphosphatidylinositolethanolamine|GPI anchor synthesis via N-seryl-glycosylphosphatidylinositolethanolamine|GPI anchor formation via N-seryl-glycosylphosphatidylinositolethanolamine RESID:AA0162 biological_process owl:Class GO:1901883 biolink:NamedThing 4-hydroxycoumarin catabolic process The chemical reactions and pathways resulting in the breakdown of 4-hydroxycoumarin. tmpzr1t_l9r_go_relaxed.owl 4-hydroxycoumarin catabolism|4-hydroxycoumarin degradation|4-hydroxycoumarin breakdown ms 2013-02-06T14:05:54Z biological_process owl:Class GO:0048478 biolink:NamedThing replication fork protection Any process that prevents the collapse of stalled replication forks. tmpzr1t_l9r_go_relaxed.owl replication fork maintenance|replication fork stabilization biological_process owl:Class GO:0046875 biolink:NamedThing ephrin receptor binding Binding to an ephrin receptor. tmpzr1t_l9r_go_relaxed.owl GPI-linked ephrin|transmembrane ephrin|Eph receptor binding|ephrin molecular_function owl:Class GO:0071205 biolink:NamedThing protein localization to juxtaparanode region of axon Any process in which a protein is transported to, or maintained at, the juxtaparanode region of an axon. tmpzr1t_l9r_go_relaxed.owl protein localisation to juxtaparanode region of axon mah 2009-11-25T01:13:55Z biological_process owl:Class GO:0000016 biolink:NamedThing lactase activity Catalysis of the reaction: lactose + H2O = D-glucose + D-galactose. tmpzr1t_l9r_go_relaxed.owl lactase-phlorizin hydrolase activity|lactose galactohydrolase activity EC:3.2.1.108|Reactome:R-HSA-5658001|Reactome:R-HSA-189062|MetaCyc:LACTASE-RXN|RHEA:10076 molecular_function owl:Class GO:0060230 biolink:NamedThing lipoprotein lipase activator activity Binds to and increases the activity of a lipoprotein lipase, an enzyme that catalyzes of the hydrolysis of a lipid within a lipoprotein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034199 biolink:NamedThing activation of protein kinase A activity Any process that initiates the activity of the inactive enzyme protein kinase A. tmpzr1t_l9r_go_relaxed.owl protein kinase A activation biological_process owl:Class GO:0051777 biolink:NamedThing ent-kaurenoate oxidase activity Catalysis of the reaction: ent-kaurenoate + NADPH + O2 = ent-7-alpha-hydroxykaurenoate + NADP+ + H2O. This is the first of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12). tmpzr1t_l9r_go_relaxed.owl ent-kaurenoic acid oxidase activity|ent-kaur-16-en-19-oate,NADPH:oxygen oxidoreductase (hydroxylating) activity MetaCyc:1.14.13.79-RXN|RHEA:19241 Note that the enzyme ent-kaurenoate oxidase also catalyzes the reactions represented by the molecular function terms 'ent-7-alpha-hydroxykaurenoate oxidase activity ; GO:0051778' and 'gibberellin 12-aldehyde oxidase activity ; GO:0051779'. molecular_function owl:Class GO:1900703 biolink:NamedThing positive regulation of orcinol biosynthetic process Any process that activates or increases the frequency, rate or extent of orcinol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of orcinol anabolism|up-regulation of orcinol anabolism|up regulation of orcinol biosynthetic process|up-regulation of orcinol synthesis|up-regulation of orcinol formation|activation of orcinol biosynthesis|positive regulation of orcinol synthesis|upregulation of orcinol biosynthesis|up regulation of orcinol formation|up regulation of orcinol synthesis|up regulation of orcinol biosynthesis|up-regulation of orcinol biosynthesis|up-regulation of orcinol biosynthetic process|positive regulation of orcinol biosynthesis|upregulation of orcinol synthesis|activation of orcinol anabolism|upregulation of orcinol biosynthetic process|positive regulation of orcinol formation|activation of orcinol biosynthetic process|activation of orcinol formation|up regulation of orcinol anabolism|upregulation of orcinol formation|upregulation of orcinol anabolism|activation of orcinol synthesis di 2012-05-22T04:58:28Z biological_process owl:Class GO:0140262 biolink:NamedThing mRNA cap binding complex binding Binding to a mRNA cap binding complex. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-12T12:56:16Z molecular_function owl:Class GO:0099180 biolink:NamedThing zinc ion import into synaptic vesicle The directed movement of Zn2+ ions from the cytoplasm into the lumen of a cytoplasmic vesicle. tmpzr1t_l9r_go_relaxed.owl Zn2+ import into synaptic vesicle|zinc import into synaptic vesicle biological_process owl:Class GO:0018165 biolink:NamedThing peptidyl-tyrosine uridylylation The uridylylation of peptidyl-tyrosine to form peptidyl-O4'-(phospho-5'-uridine)-L-tyrosine, found in glutamine synthetase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0256 biological_process owl:Class GO:0030098 biolink:NamedThing lymphocyte differentiation The process in which a relatively unspecialized precursor cell acquires specialized features of a lymphocyte. A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. tmpzr1t_l9r_go_relaxed.owl lymphocyte cell differentiation|lymphocytic blood cell differentiation|lymphocyte development Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. GO:0046650 biological_process owl:Class GO:0010024 biolink:NamedThing phytochromobilin biosynthetic process The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha. tmpzr1t_l9r_go_relaxed.owl phytochromobilin synthesis|phytochromobilin anabolism|phytochromobilin formation|phytochromobilin biosynthesis biological_process owl:Class GO:2001299 biolink:NamedThing N(omega),N(omega)-dimethyl-L-arginine catabolic process The chemical reactions and pathways resulting in the breakdown of N(omega),N(omega)-dimethyl-L-arginine, a methyl-L-arginine having two methyl groups both attached to the primary amino moiety of the guanidino group. tmpzr1t_l9r_go_relaxed.owl N(omega),N(omega)-dimethyl-L-arginine catabolism|N(omega),N(omega)-dimethyl-L-arginine breakdown|N(omega),N(omega)-dimethyl-L-arginine degradation pr 2012-02-14T03:40:03Z biological_process owl:Class GO:0036204 biolink:NamedThing abieta-7,13-dien-18-ol hydroxylase activity Catalysis of the reaction: abieta-7,13-dien-18-ol + NADPH + H+ + O2 = abieta-7,13-dien-18-al + NADP+ + 2 H2O. This is a two step reaction. The first step is: abieta-7,13-dien-18-ol + NADPH + H+ + O2 = abieta-7,13-dien-18,18-diol + + NADP+ + H2O. The second step is a spontaneous reaction: abieta-7,13-dien-18,18-diol = abieta-7,13-dien-18-al + H2O. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R06354|EC:1.14.14.145|MetaCyc:RXN-12799|RHEA:26221 bf 2012-04-24T02:37:15Z molecular_function owl:Class GO:0052691 biolink:NamedThing UDP-arabinopyranose mutase activity Catalysis of the reaction: UDP-beta-L-arabinofuranose = UDP-beta-L-arabinopyranose. tmpzr1t_l9r_go_relaxed.owl UDP-L-Ara mutase activity|UDP-L-arabinose mutase activity|uridine-diphosphate-L-arabinose mutase activity|UDP-L-arabinopyranose furanomutase activity|UDP-arabinopyranose pyranomutase activity RHEA:28350|EC:5.4.99.30|MetaCyc:RXN-11552 molecular_function owl:Class GO:0046424 biolink:NamedThing ferulate 5-hydroxylase activity Catalysis of the reaction: ferulic acid + NADPH + H+ + O2 = 5-hydroxyferulic acid + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1121 molecular_function owl:Class GO:0006062 biolink:NamedThing sorbitol catabolic process The chemical reactions and pathways resulting in the breakdown of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl sorbitol degradation|sorbitol catabolism|sorbitol breakdown MetaCyc:SORBDEG-PWY biological_process owl:Class GO:0071756 biolink:NamedThing pentameric IgM immunoglobulin complex A circulating form of IgM consisting of a pentamer of IgM core units with a single J chain polypeptide. tmpzr1t_l9r_go_relaxed.owl pentameric IgM antibody Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0102899 biolink:NamedThing dehydroabietadienol hydroxylase activity Catalysis of the reaction: H+ + dehydroabietadienol + NADPH + O2 <=> dehydroabietadiene-diol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8532 molecular_function owl:Class GO:0015309 biolink:NamedThing cycloheximide:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + cycloheximide(in) = H+(in) + cycloheximide(out). tmpzr1t_l9r_go_relaxed.owl cycloheximide:hydrogen antiporter activity molecular_function owl:Class GO:0032015 biolink:NamedThing regulation of Ran protein signal transduction Any process that modulates the frequency, rate or extent of Ran protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060459 biolink:NamedThing left lung development The biological process whose specific outcome is the progression of a left lung from an initial condition to its mature state. This process begins with the formation of the left lung and ends with the mature structure. The left lung is the lung which is on the left side of the anterior posterior axis looking from a dorsal to ventral aspect. tmpzr1t_l9r_go_relaxed.owl left pulmonary development biological_process owl:Class GO:0019916 biolink:NamedThing peptidyl-D-alanine racemization, direct The racemization of peptidyl-alanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0191 biological_process owl:Class GO:0043573 biolink:NamedThing leucoplast fission The creation of two or more leucoplasts by division of one leucoplast. A leucoplast is a colorless plastid involved in the synthesis of monoterpenes. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003842 biolink:NamedThing 1-pyrroline-5-carboxylate dehydrogenase activity Catalysis of the reaction: 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH + H(+). tmpzr1t_l9r_go_relaxed.owl delta1-pyrroline-5-carboxylate dehydrogenase activity|L-pyrroline-5-carboxylate-NAD+ oxidoreductase activity|pyrroline-5-carboxylate dehydrogenase activity|pyrroline-5-carboxylic acid dehydrogenase activity|1-pyrroline-5-carboxylate:NAD+ oxidoreductase activity|1-pyrroline dehydrogenase RHEA:16417|MetaCyc:PYRROLINECARBDEHYDROG-RXN|Reactome:R-HSA-6784399|EC:1.2.1.88|Reactome:R-HSA-70679 molecular_function owl:Class GO:2001125 biolink:NamedThing negative regulation of translational frameshifting Any process that stops, prevents or reduces the frequency, rate or extent of translational frameshifting. tmpzr1t_l9r_go_relaxed.owl dph 2011-10-12T05:52:27Z biological_process owl:Class GO:0014719 biolink:NamedThing skeletal muscle satellite cell activation The change of a skeletal muscle satellite cell from a mitotically quiescent to a mitotically active state following exposure to some activating factor such as a cellular or soluble ligand. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102320 biolink:NamedThing 1,8-cineole 2-exo-monooxygenase activity Catalysis of the reaction: 1,8-cineole + NADPH + H+ + O2 <=> 2-exo-hydroxy-1,8-cineole + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:32895|MetaCyc:RXN-13133|EC:1.14.14.56 molecular_function owl:Class GO:0090443 biolink:NamedThing FAR/SIN/STRIPAK complex A conserved protein phosphatase type 2A complex which contains a protein phosphatase type 2A, a protein phosphatase regulatory subunit, a striatin, an FHA domain protein and other subunits (at least six proteins). In fission yeast this complex negatively regulate the septation initiation network at the spindle pole body. tmpzr1t_l9r_go_relaxed.owl FAR complex|SIP complex|STRIPAK signalling complex|striatin interacting phosphatase and kinase complex tb 2012-08-23T14:20:39Z cellular_component owl:Class GO:0035900 biolink:NamedThing response to isolation stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lack of contact with other members of the same species. tmpzr1t_l9r_go_relaxed.owl response to social isolation bf 2011-06-22T09:39:57Z biological_process owl:Class GO:0031425 biolink:NamedThing chloroplast RNA processing The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035316 biolink:NamedThing non-sensory hair organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of non-sensory hairs. These hairs are polarized cellular extensions that cover much of the insect epidermis. tmpzr1t_l9r_go_relaxed.owl non-sensory hair organization and biogenesis|trichome organization and biogenesis|trichome organisation See also the fly_anatomy.ontology term 'trichome ; FBbt:00004979'. biological_process owl:Class GO:0018391 biolink:NamedThing C-terminal peptidyl-glutamic acid tyrosinylation The ATP-dependent addition of a tyrosine residue to a glutamic acid residue at the C-terminus of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017195 biolink:NamedThing N-terminal peptidyl-lysine N2-acetylation The acetylation of the N-terminal lysine of proteins to form the derivative N2-acetyl-L-lysine. The occurrence of this modification has not been confirmed. tmpzr1t_l9r_go_relaxed.owl RESID:AA0048 biological_process owl:Class GO:0102103 biolink:NamedThing demethoxycurcumin synthase Catalysis of the reaction: (4-coumaroyl)acetyl-CoA + 4-coumaryl-CoA + H2O <=> bisdemethoxycurcumin + 2 coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl RHEA:35119|MetaCyc:RXN-11223|EC:2.3.1.219 molecular_function owl:Class GO:0062032 biolink:NamedThing cichorine biosynthetic process The chemical reactions and pathways resulting in the formation of cichorine, a secondary metabolite found in some species of fungi. tmpzr1t_l9r_go_relaxed.owl cichorine formation|cichorine synthesis|cichorine anabolism|cichorine biosynthesis dph 2018-04-19T16:22:09Z biological_process owl:Class GO:0102697 biolink:NamedThing trans-zeatin-O-glucoside UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + O-beta-D-glucosyl-trans-zeatin = H+ + trans-zeatin-O-glucoside-7-N-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4736 molecular_function owl:Class GO:0046553 biolink:NamedThing D-malate dehydrogenase (decarboxylating) activity Catalysis of the reaction: (R)-malate + NAD(+) = CO(2) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl bifunctional L(+)-tartrate dehydrogenase-D(+)-malate (decarboxylating)|(R)-malate:NAD+ oxidoreductase (decarboxylating)|D-malic enzyme|D-malate dehydrogenase activity KEGG_REACTION:R00215|EC:1.1.1.83|RHEA:18365|MetaCyc:1.1.1.83-RXN molecular_function owl:Class GO:0005832 biolink:NamedThing chaperonin-containing T-complex A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor. tmpzr1t_l9r_go_relaxed.owl CCT particle|TriC cellular_component owl:Class GO:0090590 biolink:NamedThing protein-N(PI)-phosphohistidine-D-glucosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + D-glucosamine(out) = protein histidine + glucosamine-6-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:33:01Z molecular_function owl:Class GO:0140541 biolink:NamedThing piRNA transcription The cellular synthesis of Piwi-interacting RNA piRNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. tmpzr1t_l9r_go_relaxed.owl Piwi-associated RNA transcription|PIWI-interacting RNA transcription https://github.com/geneontology/go-ontology/issues/19530 pg 2020-11-09T16:53:25Z biological_process owl:Class GO:0018938 biolink:NamedThing 2-nitropropane metabolic process The chemical reactions and pathways involving 2-nitropropane, a clear, colorless liquid with a mild, fruity odor. 2-nitropropane is used principally as a solvent and chemical intermediate. As a solvent, it is used in inks, paints, adhesives, varnishes, polymers, and synthetic materials. It is a feedstock for the manufacture of 2-nitro-2-methyl-1-propanol and 2-amino-2-methyl-1-propanol. tmpzr1t_l9r_go_relaxed.owl 2-nitropropane metabolism MetaCyc:PWY-723|UM-BBD_pathwayID:npp biological_process owl:Class GO:1900447 biolink:NamedThing regulation of cell morphogenesis involved in phenotypic switching Any process that modulates the frequency, rate or extent of cell morphogenesis contributing a phenotypic switch. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells, such as the opaque cells of C. albicans, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. tmpzr1t_l9r_go_relaxed.owl positive regulation of cell shape and cell size of phenotypic dimorphism|negative regulation of cell shape and cell size of phenotypic dimorphism|regulation of cell morphogenesis of phenotypic dimorphism|regulation of cell shape and cell size of phenotypic dimorphism|negative regulation of cell shape and cell size of phenotypic switching|regulation of cell morphogenesis of phenotypic switching|regulation of cell shape and cell size of phenotypic switching|positive regulation of cell shape and cell size of phenotypic switching di 2012-04-27T02:43:32Z biological_process owl:Class GO:0120310 biolink:NamedThing amastigogenesis The morphological, biochemical and genetic changes that induce the differentiation of metacyclic parasites into amastigotes in some of the Trypanosomatidae species such as Leishmania parasites and Trypanosoma cruzi. This process occurs inside the cells of the mammalian hosts, particularly in macrophages and other phagocytic cells for Leishmania parasites. tmpzr1t_l9r_go_relaxed.owl krc 2021-03-23T21:17:19Z biological_process owl:Class GO:1904349 biolink:NamedThing positive regulation of small intestine smooth muscle contraction Any process that activates or increases the frequency, rate or extent of small intestine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl up-regulation of small intestine smooth muscle contraction|up regulation of small intestine smooth muscle contraction|activation of small intestine smooth muscle contraction|upregulation of small intestine smooth muscle contraction sl 2015-06-11T21:37:46Z biological_process owl:Class GO:1902858 biolink:NamedThing propionyl-CoA metabolic process The chemical reactions and pathways involving propionyl-CoA. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA metabolism tt 2014-04-03T03:10:17Z biological_process owl:Class GO:1902330 biolink:NamedThing synthesis of RNA primer involved in bacterial-type DNA replication Any synthesis of RNA primer that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl replication priming involved in bacterial-type DNA replication jl 2013-07-25T10:48:18Z biological_process owl:Class GO:0046762 biolink:NamedThing viral budding from endoplasmic reticulum membrane A viral budding that starts with formation of a membrane curvature in the host ER membrane. tmpzr1t_l9r_go_relaxed.owl viral budding from ER membrane|virus budding from ER membrane|ER membrane viral budding|endoplasmic reticulum membrane viral budding|virus budding from ER membrane during viral capsid envelopment|viral budding from ER membrane by viral capsid envelopment|ER membrane viral budding during viral capsid envelopment|viral budding from ER membrane during viral capsid envelopment|endoplasmic reticulum membrane viral budding during viral capsid envelopment|virus budding from ER membrane by viral capsid envelopment GO:0046751|GO:0046764 biological_process owl:Class GO:0071095 biolink:NamedThing alpha3-beta1 integrin-thrombospondin complex A protein complex that consists of an alpha3-beta1 integrin complex bound to thrombospondin. tmpzr1t_l9r_go_relaxed.owl ITGA3-ITGB1-THBS1 complex mah 2009-11-06T04:48:03Z cellular_component owl:Class GO:0033409 biolink:NamedThing UAU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UAU codon. tmpzr1t_l9r_go_relaxed.owl tyrosine tRNA|TAT codon-amino acid adaptor activity Note that in the standard genetic code, TAT codes for tyrosine. molecular_function owl:Class GO:1905353 biolink:NamedThing ciliary transition fiber assembly The aggregation, arrangement and bonding together of a set of components to form a ciliary transition fiber. tmpzr1t_l9r_go_relaxed.owl distal appendage of mother centriole formation|cilial transition fibre formation|cilial transition fiber formation|centriolar distal appendage assembly|distal appendage of basal body assembly|cilial transition fiber assembly|cilium transition fiber formation|centriolar distal appendage formation|ciliary transition fiber formation|distal appendage of mother centriole assembly|cilium transition fibre formation|distal appendage of centriole assembly|ciliary transition fibre assembly|cilium transition fiber assembly|ciliary transition fibre formation|cilium transition fibre assembly|cilial transition fibre assembly|distal appendage of basal body formation|distal appendage of centriole formation pr 2016-08-05T14:01:32Z biological_process owl:Class GO:0000131 biolink:NamedThing incipient cellular bud site The portion of the budding yeast plasma membrane where a daughter cell will emerge. The yeast marks this spot with bud-site selection proteins before bud emergence occurs. Actin is polarized to this spot just prior to and during bud emergence. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0072259 biolink:NamedThing metanephric interstitial fibroblast development The process whose specific outcome is the progression of a metanephric interstitial fibroblast over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl metanephros interstitial cell development mah 2010-03-19T04:18:00Z biological_process owl:Class GO:0051064 biolink:NamedThing TTP reductase activity Catalysis of the reaction: dTTP + thioredoxin disulfide + H2O = TTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl TTP reduction EC:1.17.4.- molecular_function owl:Class GO:0030283 biolink:NamedThing testosterone dehydrogenase [NAD(P)] activity Catalysis of the reaction: testosterone + NAD(P)+ = androst-4-ene-3,17-dione + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 3beta-hydroxysteroid dehydrogenase|3beta-hydroxy steroid dehydrogenase|17beta-hydroxy steroid dehydrogenase|3(or 17)beta-hydroxysteroid dehydrogenase activity|beta-hydroxy steroid dehydrogenase|3(or 17)beta-hydroxysteroid:NAD(P)+ oxidoreductase EC:1.1.1.51|MetaCyc:1.1.1.51-RXN|Reactome:R-HSA-193064 molecular_function owl:Class GO:0098615 biolink:NamedThing dimethyl selenide methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + dimethyl selenide => S-adenosyl-L-homocysteine + trimethylselenonium. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408554 molecular_function owl:Class GO:0034793 biolink:NamedThing cyclopropanecarboxylate-CoA ligase activity Catalysis of the reaction: cyclopropanecarboxylate + CoASH = cyclopropanecarboxyl-CoA + OH-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1056 molecular_function owl:Class GO:2000070 biolink:NamedThing regulation of response to water deprivation Any process that modulates the frequency, rate or extent of response to water deprivation. tmpzr1t_l9r_go_relaxed.owl regulation of drought tolerance|regulation of response to dehydration|regulation of response to thirst|regulation of response to drought tb 2010-08-23T11:32:32Z biological_process owl:Class GO:0036447 biolink:NamedThing cellular response to sugar-phosphate stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the accumulation of sugar-phosphate. tmpzr1t_l9r_go_relaxed.owl cellular response to presence of non-metabolizable sugars bf 2013-10-31T11:18:09Z biological_process owl:Class GO:0061707 biolink:NamedThing extracellular exosome macropinocytosis The single-organism macropinocytosis process that results in the uptake of an extracellular exosome. tmpzr1t_l9r_go_relaxed.owl dph 2015-06-15T16:02:38Z biological_process owl:Class GO:0019922 biolink:NamedThing protein-chromophore linkage via peptidyl-cysteine The covalent linking of a chromophore to a protein via peptidyl-cysteines. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043807 biolink:NamedThing 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) activity Catalysis of the reaction: 3-methyl-2-oxobutanoate + CoA + oxidized ferredoxin = S-(2-methylpropanoyl)-CoA + CO2 + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl ketoisovalerate ferredoxin reductase activity|3-methyl-2-oxobutanoate synthase (ferredoxin) activity|branched-chain oxo acid ferredoxin reductase activity|keto-valine-ferredoxin oxidoreductase activity|3-methyl-2-oxobutanoate:ferredoxin oxidoreductase (decarboxylating; CoA-2-methylpropanoylating)|ketoisovalerate oxidoreductase activity|branched-chain ketoacid ferredoxin reductase activity|2-oxoisovalerate ferredoxin reductase activity|VOR|2-ketoisovalerate ferredoxin reductase activity RHEA:11712|EC:1.2.7.7|MetaCyc:1.2.7.7-RXN molecular_function owl:Class GO:0120320 biolink:NamedThing lateral pseudopodium retraction The myosin-based contraction and retraction of a lateral pseudopodium. tmpzr1t_l9r_go_relaxed.owl lateral pseudopodium suppression krc 2021-06-23T21:50:09Z biological_process owl:Class GO:0016507 biolink:NamedThing mitochondrial fatty acid beta-oxidation multienzyme complex A complex that includes the long-chain 3-hydroxyacyl-CoA dehydrogenase and long-chain enoyl-CoA hydratase activities in two subunits (alpha and beta), catalyzing two steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl trifunctional enzyme|fatty acid beta-oxidation multienzyme complex cellular_component owl:Class GO:0075032 biolink:NamedThing negative regulation of formation of symbiont germ tube hook structure for appressorium development Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont germ tube hook structure formation. tmpzr1t_l9r_go_relaxed.owl negative regulation of germ tube tip of symbiont on or near the exterior of host|negative regulation of formation of symbiont germ tube hook structure on or near host|negative regulation of symbiont germ tube hook structure formation on or near host biological_process owl:Class GO:0051281 biolink:NamedThing positive regulation of release of sequestered calcium ion into cytosol Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria. tmpzr1t_l9r_go_relaxed.owl positive regulation of calcium ion (Ca2+) mobilization|positive regulation of release of sequestered calcium ion into cytoplasm|positive regulation of cytosolic release of sequestered calcium ion (Ca2+)|positive regulation of calcium mobilization|activation of release of sequestered calcium ion into cytosol|positive regulation of release of stored calcium ion (Ca2+)|positive regulation of release of stored calcium ion (Ca2+) into cytoplasm|up regulation of release of sequestered calcium ion into cytosol|positive regulation of cytoplasmic release of sequestered calcium ion (Ca2+)|positive regulation of cytoplasmic release of stored calcium ion (Ca2+)|upregulation of release of sequestered calcium ion into cytosol|stimulation of release of sequestered calcium ion into cytosol|positive regulation of release of stored calcium ion (Ca2+) into cytosol|positive regulation of cytosolic release of stored calcium ion (Ca2+)|up-regulation of release of sequestered calcium ion into cytosol|positive regulation of release of sequestered calcium ion (Ca2+) biological_process owl:Class GO:0070662 biolink:NamedThing mast cell proliferation The expansion of a mast cell population by cell division. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-28T05:27:51Z biological_process owl:Class GO:0044418 biolink:NamedThing translocation of DNA into host The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl transport of DNA into other organism during symbiotic interaction|transport of DNA into host|translocation of DNA into other organism involved in symbiotic interaction|translocation of DNA into other organism during symbiotic interaction GO:0051837 biological_process owl:Class GO:0033854 biolink:NamedThing glutamate-prephenate aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + L-arogenate = L-glutamate + prephenate. tmpzr1t_l9r_go_relaxed.owl L-arogenate:2-oxoglutarate aminotransferase activity|L-glutamate:prephenate aminotransferase activity|PAT|prephenate transaminase activity RHEA:22880|MetaCyc:PREPHENATE-TRANSAMINE-RXN|KEGG_REACTION:R07276|EC:2.6.1.79 molecular_function owl:Class GO:0042585 biolink:NamedThing germinal vesicle The enlarged, fluid filled nucleus of a primary oocyte, the development of which is suspended in prophase I of the first meiotic division between embryohood and sexual maturity. tmpzr1t_l9r_go_relaxed.owl primary oocyte nucleus cellular_component owl:Class GO:0001674 biolink:NamedThing female germ cell nucleus The nucleus of the female germ cell, a reproductive cell in females. tmpzr1t_l9r_go_relaxed.owl female germ-cell nucleus GO:0043080 cellular_component owl:Class GO:0008686 biolink:NamedThing 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+). tmpzr1t_l9r_go_relaxed.owl MetaCyc:DIOHBUTANONEPSYN-RXN|RHEA:18457|EC:4.1.99.12|KEGG_REACTION:R07281 molecular_function owl:Class GO:0097220 biolink:NamedThing simple sieve plate A sieve plate that contains a single specialized sieve area. tmpzr1t_l9r_go_relaxed.owl Often located on an end wall of a sieve tube member. Unspecialized sieve areas may occur on other parts of the cell. pr 2012-01-13T05:46:46Z cellular_component owl:Class GO:0031171 biolink:NamedThing ferricrocin biosynthetic process The chemical reactions and pathways resulting in the formation of ferricrocin, a cyclic hexapeptide siderophore with the structure Gly-Ser-Gly-(N5-acetyl-N5-hydroxyornithine)3. tmpzr1t_l9r_go_relaxed.owl ferricrocin formation|ferricrocin synthesis|ferricrocin biosynthetic process, peptide modification|ferricrocin biosynthetic process, peptide formation|ferricrocin biosynthesis|ferricrocin anabolism GO:0031185|GO:0031186 biological_process owl:Class GO:0047863 biolink:NamedThing dimethylallylcistransferase activity Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + neryl diphosphate. tmpzr1t_l9r_go_relaxed.owl neryl-diphosphate synthase activity|dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallylcistransferase activity MetaCyc:DIMETHYLALLYLCISTRANSFERASE-RXN|EC:2.5.1.28|RHEA:11328|KEGG_REACTION:R01659 molecular_function owl:Class GO:0050479 biolink:NamedThing glyceryl-ether monooxygenase activity Catalysis of the reaction: 1-alkyl-sn-glycerol + O2 + (tetrahydrobiopterin/tetrahydropteridine) = 1-hydroxyalkyl-sn-glycerol + H2O + (dihydrobiopterin/dihydropteridine). tmpzr1t_l9r_go_relaxed.owl glyceryl ether oxygenase activity|O-alkylglycerol monooxygenase activity|1-alkyl-sn-glycerol,tetrahydrobiopterin:oxygen oxidoreductase activity|glyceryl-ether cleaving enzyme activity|glyceryl etherase activity|alkylglycerol monooxygenase activity Reactome:R-HSA-5696119|RHEA:36255|MetaCyc:GLYCERYL-ETHER-MONOOXYGENASE-RXN|EC:1.14.16.5 molecular_function owl:Class GO:0070715 biolink:NamedThing sodium-dependent organic cation transport The directed, sodium-dependent, movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-09T03:26:27Z biological_process owl:Class GO:0030598 biolink:NamedThing rRNA N-glycosylase activity Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species. tmpzr1t_l9r_go_relaxed.owl RNA N-glycosidase activity|gelonin|rRNA N-glycohydrolase activity|mirabilis antiviral protein|saporins|ribosomal ribonucleate N-glycosidase activity|rRNA N-glycosidase activity|ricin|nigrin b|momorcochin-S MetaCyc:3.2.2.22-RXN|EC:3.2.2.22 molecular_function owl:Class GO:0075028 biolink:NamedThing negative regulation of appressorium initiation Any process that stops, prevents, or reduces the frequency, rate or extent symbiont appressorium initiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of initiation of appressorium on or near host|negative regulation of appressorium initiation on or near host biological_process owl:Class GO:0047338 biolink:NamedThing UTP:xylose-1-phosphate uridylyltransferase activity Catalysis of the reaction: alpha-D-xylose 1-phosphate + UTP = UDP-D-xylose + diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-xylose pyrophosphorylase activity|UTP-xylose-1-phosphate uridylyltransferase activity|uridine diphosphoxylose pyrophosphorylase activity|UTP:alpha-D-xylose-1-phosphate uridylyltransferase activity|xylose 1-phosphate uridylyltransferase activity|xylose-1-phosphate uridylyltransferase activity|uridylyltransferase, xylose 1-phosphate EC:2.7.7.11|MetaCyc:2.7.7.11-RXN|RHEA:18389 molecular_function owl:Class GO:0043514 biolink:NamedThing interleukin-12 complex A protein complex that is composed of an interleukin-12 alpha (p35, product of the IL12A gene) and an interleukin-12 beta subunit (p40, product of the IL12B gene) and is secreted into the extracellular space. tmpzr1t_l9r_go_relaxed.owl p35|IL12B|IL12A|p40|IL-12 complex Note that this heterodimeric cytokine utilizes the IL-12p35 subunit as its alpha chain, which is also used by IL-35 as its alpha chain, and utilizes the IL-12p40 subunit as its beta chain, which is also used by IL-23 as its beta chain. cellular_component owl:Class GO:1900875 biolink:NamedThing heptadec-1-ene biosynthetic process The chemical reactions and pathways resulting in the formation of heptadec-1-ene. tmpzr1t_l9r_go_relaxed.owl heptadec-1-ene synthesis|heptadec-1-ene formation|heptadec-1-ene biosynthesis|heptadec-1-ene anabolism tt 2012-06-13T01:50:11Z biological_process owl:Class GO:1902000 biolink:NamedThing homogentisate catabolic process The chemical reactions and pathways resulting in the breakdown of homogentisate. tmpzr1t_l9r_go_relaxed.owl homogentisate degradation|homogentisate breakdown|homogentisate catabolism tb 2013-03-21T00:01:12Z biological_process owl:Class GO:0047018 biolink:NamedThing indole-3-acetaldehyde reductase (NADH) activity Catalysis of the reaction: indole-3-ethanol + NAD(+) = (indol-3-yl)acetaldehyde + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (indol-3-yl)ethanol:NAD+ oxidoreductase activity|indole-3-ethanol:NAD+ oxidoreductase activity|indoleacetaldehyde reductase activity RHEA:14873|EC:1.1.1.190|KEGG_REACTION:R02679|MetaCyc:1.1.1.190-RXN molecular_function owl:Class GO:0090429 biolink:NamedThing detection of endogenous biotic stimulus The series of events in which an endogenous biotic stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl tb 2012-05-11T09:19:39Z biological_process owl:Class GO:1990388 biolink:NamedThing xylem-to-phloem iron transport The directed movement of iron ions into the phloem from the xylem. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-30T21:06:50Z biological_process owl:Class GO:0102639 biolink:NamedThing paspalicine synthase activity Catalysis of the reaction: 13-desoxypaxilline + NADPH + O2 + H+ <=> paspalicine + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15737 molecular_function owl:Class GO:0140337 biolink:NamedThing diacylglyceride transfer activity Directly binding to diacylglyceride and delivering it either to an acceptor molecule or to a specific location. tmpzr1t_l9r_go_relaxed.owl diacylglyceride carrier activity pg 2019-05-16T11:28:08Z molecular_function owl:Class GO:0004324 biolink:NamedThing ferredoxin-NADP+ reductase activity Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH:ferredoxin oxidoreductase activity|TPNH-ferredoxin reductase activity|NADP:ferredoxin oxidoreductase activity|ferredoxin-nicotinamide-adenine dinucleotide phosphate (oxidized) reductase activity|ferredoxin-TPN reductase activity|ferredoxin:NADP+ oxidoreductase activity|ferredoxin-NADP oxidoreductase activity|ferredoxin-nicotinamide adenine dinucleotide phosphate reductase activity|reduced nicotinamide adenine dinucleotide phosphate-adrenodoxin reductase activity|ferredoxin-NADP reductase activity|ferredoxin-NADP-oxidoreductase activity EC:1.18.1.2|MetaCyc:1.18.1.2-RXN|RHEA:20125 Note that this term specifically refers to the reaction proceeding in the direction shown; it should therefore be used to annotate gene products that catalyze the oxidation of reduced ferredoxin or adrenodoxin; also consider annotating to the molecular function term 'NADPH-adrenodoxin reductase activity ; GO:0015039'. molecular_function owl:Class GO:0008937 biolink:NamedThing ferredoxin-NAD(P) reductase activity Catalysis of the reaction: reduced ferredoxin + NAD(P)+ = oxidized ferredoxin + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl ferredoxin reductase activity molecular_function owl:Class GO:0036355 biolink:NamedThing 2-iminoacetate synthase activity Catalysis of the reaction: L-tyrosine + S-adenosyl-L-methionine + reduced acceptor = 2-iminoacetate + 4-methylphenol + 5'-deoxyadenosine + L-methionine + acceptor + 2 H+. tmpzr1t_l9r_go_relaxed.owl RHEA:26361|EC:4.1.99.19|MetaCyc:RXN-11319 bf 2012-09-19T14:52:51Z molecular_function owl:Class GO:0030020 biolink:NamedThing extracellular matrix structural constituent conferring tensile strength A constituent of the extracellular matrix that enables the matrix to resist longitudinal stress. tmpzr1t_l9r_go_relaxed.owl core matrisome|core extracellular matrix Extracellular matrix collagen proteins may be annotated to this term. PMID:29632050, PMID:24443019 molecular_function owl:Class GO:0097158 biolink:NamedThing pre-mRNA intronic pyrimidine-rich binding Binding to a pyrimidine-rich (CU-rich) intronic sequence of a pre-messenger RNA (pre-mRNA). tmpzr1t_l9r_go_relaxed.owl pre-messenger RNA intronic pyrimidine-rich binding pr 2011-09-23T11:29:03Z molecular_function owl:Class GO:0097157 biolink:NamedThing pre-mRNA intronic binding Binding to an intronic sequence of a pre-messenger RNA (pre-mRNA). tmpzr1t_l9r_go_relaxed.owl pre-messenger RNA intronic binding pr 2011-09-23T11:27:01Z molecular_function owl:Class GO:0043433 biolink:NamedThing negative regulation of DNA-binding transcription factor activity Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. tmpzr1t_l9r_go_relaxed.owl negative regulation of DNA binding transcription factor activity|down regulation of transcription factor activity|downregulation of transcription factor activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of androgen receptor activity|inhibition of transcription factor activity|down-regulation of transcription factor activity|negative regulation of transcription factor activity|negative regulation of thyroid hormone receptor activity 2011-07-15T10:56:12Z GO:1904168|GO:2000824 biological_process owl:Class GO:0046787 biolink:NamedThing viral DNA repair The process of restoring viral DNA after damage or errors in replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904585 biolink:NamedThing response to putrescine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a putrescine stimulus. tmpzr1t_l9r_go_relaxed.owl response to tetramethylenediamine|response to 1,4-Butanediamine|response to 1,4-Diaminobutane sl 2015-08-20T14:35:39Z biological_process owl:Class GO:0008748 biolink:NamedThing N-ethylmaleimide reductase activity Catalysis of the reaction: N-ethylmaleimide + NADPH + 2 H+ = N-ethylsuccinimide + NADP+. tmpzr1t_l9r_go_relaxed.owl RHEA:35523|MetaCyc:RXN0-5101 molecular_function owl:Class GO:0052608 biolink:NamedThing echinenone 3-hydroxylase activity Catalysis of the reaction: echinenone + a reduced electron acceptor + oxygen = 3-hydroxyechinenone + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl beta-carotene hydroxylase activity|carotene beta-ring hydroxylase activity|beta-ring carotenoid 3-hydroxylase activity MetaCyc:RXN-8214 molecular_function owl:Class GO:0033421 biolink:NamedThing CCU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CCU codon. tmpzr1t_l9r_go_relaxed.owl proline tRNA|CCT codon-amino acid adaptor activity Note that in the standard genetic code, CCT codes for proline. molecular_function owl:Class GO:0047228 biolink:NamedThing 1,2-diacylglycerol 3-glucosyltransferase activity Catalysis of the reaction: 1,2-diacylglycerol + UDP-D-glucose = 3-D-glucosyl-1,2-diacylglycerol + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:diacylglycerol glucosyltransferase activity|uridine diphosphoglucose-diacylglycerol glucosyltransferase activity|UDP-glucose:1,2-diacylglycerol glucosyltransferase activity|UDP-glucose:1,2-diacylglycerol 3-D-glucosyltransferase activity|UDPglucose:1,2-diacylglycerol 3-D-glucosyltransferase activity|UDP-glucose-diacylglycerol glucosyltransferase activity EC:2.4.1.157|MetaCyc:2.4.1.157-RXN molecular_function owl:Class GO:1990962 biolink:NamedThing xenobiotic transport across blood-brain barrier The directed movement of a xenobiotic through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl drug transport across blood-brain barrier sl 2016-06-07T17:39:33Z biological_process owl:Class GO:0102287 biolink:NamedThing 4-coumaroylhexanoylmethane synthase activity Catalysis of the reaction: 4-coumaryl-CoA + 3-oxooctanoyl-CoA + H2O <=> 4-coumaroylhexanoylmethane + 2 coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12668 molecular_function owl:Class GO:0010706 biolink:NamedThing ganglioside biosynthetic process via lactosylceramide The chemical reactions and pathways resulting in the formation of gangliosides that begins with the formation of lactosylceramides, Gal-beta-(1->4)-Glc-beta-(1->1') ceramides, any compound formed by the replacement of the glycosidic C1 hydroxyl group of lactose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl lactosylceramide biosynthetic process leading to ganglioside|ganglioside biosynthesis via lactosylceramide biosynthesis|lactosylceramide biosynthesis leading to ganglioside|biosynthesis of lactosylceramide precursor to ganglioside biological_process owl:Class GO:0016057 biolink:NamedThing regulation of membrane potential in photoreceptor cell Hyperpolarization (vertebrates) or depolarization (invertebrates) of the photoreceptor cell membrane via closing/opening of cation specific channels as a result of signals generated by rhodopsin activation by a photon. tmpzr1t_l9r_go_relaxed.owl changes in polarization state of photoreceptor cell membrane biological_process owl:Class GO:1904435 biolink:NamedThing regulation of transferrin receptor binding Any process that modulates the frequency, rate or extent of transferrin receptor binding. tmpzr1t_l9r_go_relaxed.owl kom 2015-07-06T13:49:01Z biological_process owl:Class GO:0018914 biolink:NamedThing chlorobenzene metabolic process The chemical reactions and pathways involving chlorobenzene, a derivative of benzene with a chlorine atoms attached to the ring. It is a colorless liquid that is manufactured for use as a solvent. It quickly evaporates in the air and is degraded by hydroxyl radicals that are produced photochemically. The gas acts as a source of ClOx, which helps in the breakdown of stratospheric ozone. tmpzr1t_l9r_go_relaxed.owl chlorobenzene metabolism UM-BBD_pathwayID:cb biological_process owl:Class GO:0046686 biolink:NamedThing response to cadmium ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to cadmium|cadmium sensitivity/resistance biological_process owl:Class GO:0008346 biolink:NamedThing larval walking behavior The behavior of a larval organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg. tmpzr1t_l9r_go_relaxed.owl larval walking behaviour biological_process owl:Class GO:0031686 biolink:NamedThing A1 adenosine receptor binding Binding to an A1 adenosine receptor. tmpzr1t_l9r_go_relaxed.owl A1 adenosine receptor ligand molecular_function owl:Class GO:0033193 biolink:NamedThing Lsd1/2 complex A nucleosome-binding protein complex that comprises two SWIRM domain histone demethylases and two PHD finger proteins. The complex is involved in transcriptional regulation via heterochromatic silencing and the regulation of chromatin boundary formation, and was first identified in fission yeast. tmpzr1t_l9r_go_relaxed.owl Swm1/2 complex|SAPHIRE complex|Swm complex cellular_component owl:Class GO:0052843 biolink:NamedThing inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity Catalysis of the reaction: inositol 1-diphosphate 2,3,4,5,6-pentakisphosphate + H2O = inositol 1,2,3,4,5,6-hexakisphosphate + phosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10977 ai 2011-12-05T10:42:00Z molecular_function owl:Class GO:1905962 biolink:NamedThing glutamatergic neuron differentiation The process in which a relatively unspecialized cell acquires the specialized features of a glutamatergic neuron. tmpzr1t_l9r_go_relaxed.owl sl 2017-02-23T17:40:43Z biological_process owl:Class GO:0106326 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-threonyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:56192|EC:2.4.1.148 hjd 2020-09-30T13:40:25Z molecular_function owl:Class GO:1902698 biolink:NamedThing pentose catabolic process to butyrate The chemical reactions and pathways resulting in the breakdown of pentose to butyrate. tmpzr1t_l9r_go_relaxed.owl acidogenesis|pentose breakdown to butyrate|pentose catabolism to butyrate|pentose degradation to butyrate tb 2014-02-19T18:28:28Z GO:1990288 biological_process owl:Class GO:0018793 biolink:NamedThing 3,5-dibromo-4-hydroxybenzoate decarboxylase activity Catalysis of the reaction: 3,5-dibromo-4-hydroxybenzoate + H+ = CO2 + 2,6-dibromophenol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0546 molecular_function owl:Class GO:0031880 biolink:NamedThing type 3 somatostatin receptor binding Binding to a type 3 somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl type 3 somatostatin receptor ligand molecular_function owl:Class GO:0046401 biolink:NamedThing lipopolysaccharide core region metabolic process The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues. The structure of this core oligosaccharide appears to be similar in closely related bacterial strains. tmpzr1t_l9r_go_relaxed.owl LPS core region metabolic process|lipopolysaccharide core region metabolism biological_process owl:Class GO:0030959 biolink:NamedThing peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine The modification of two peptidyl-tyrosines to form a 3'-(3'-L-tyrosinyl)-L-tyrosine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0367 biological_process owl:Class GO:0043825 biolink:NamedThing succinylornithine transaminase activity Catalysis of the reaction: 2-oxoglutarate + N(2)-succinyl-L-ornithine = N-succinyl-L-glutamate 5-semialdehyde + L-glutamate. tmpzr1t_l9r_go_relaxed.owl N2-succinylornithine 5-aminotransferase activity|N(2)-succinylornithine 5-aminotransferase activity|succinyl ornithine transaminase activity|2-N-succinyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity|succinyl-ornithine transaminase activity|AstC|succinylornithine aminotransferase activity|N2-succinyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity|SOAT MetaCyc:SUCCORNTRANSAM-RXN|EC:2.6.1.81|KEGG_REACTION:R04217|RHEA:16953 molecular_function owl:Class GO:0044076 biolink:NamedThing positive regulation by symbiont of host vacuole organization The process in which a symbiont organism activates or increases the frequency, rate or extent of vacuole organization in its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of host vacuole organization by symbiont|positive regulation by symbiont of host vacuole organisation|positive regulation by symbiont of host vacuole biogenesis biological_process owl:Class GO:0033257 biolink:NamedThing Bcl3/NF-kappaB2 complex A protein complex containing one Bcl protein and one or more copies of NF-kappaB2; formation of complexes of different stoichiometry depends on the Bcl3:NF-kappaB2 ratio, and allow Bcl3 to exert different regulatory effects on NF-kappaB2-dependent transcription. tmpzr1t_l9r_go_relaxed.owl Bcl3-NFKB2 complex|Bcl3-p52 complex cellular_component owl:Class GO:0033256 biolink:NamedThing I-kappaB/NF-kappaB complex A protein complex containing an inhibitory-kappaB (I-kappaB/IKB) protein and one or more copies of an NF-kappaB protein. In the resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004329 biolink:NamedThing formate-tetrahydrofolate ligase activity Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl 10-formyl-THF synthetase activity|tetrahydrofolic formylase activity|10-formyltetrahydrofolate synthetase activity|formyltetrahydrofolate synthetase activity|formate:tetrahydrofolate ligase (ADP-forming)|tetrahydrofolate formylase activity RHEA:20221|Reactome:R-HSA-5696839|Reactome:R-HSA-6801456|MetaCyc:FORMATETHFLIG-RXN|EC:6.3.4.3|Reactome:R-HSA-200711 molecular_function owl:Class GO:0106100 biolink:NamedThing beta-pinacene synthase activity Catalysis of the cyclization of geranylgeranyl pyrophosphate (GGPP) to yield the monocyclic diterpene beta-pinacene. tmpzr1t_l9r_go_relaxed.owl hjd 2018-02-15T16:51:59Z molecular_function owl:Class GO:0005642 biolink:NamedThing annulate lamellae Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102327 biolink:NamedThing 3-oxoacyl-CoA hydrolase activity Catalysis of the reaction: H2O + a 3-oxoacyl-CoA = H+ + coenzyme A + a 3-oxoacid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13247 molecular_function owl:Class GO:1901481 biolink:NamedThing L-glutamate import involved in cellular response to nitrogen starvation Any L-glutamate import that is involved in cellular response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl L-glutamate uptake involved in cellular response to nitrogen starvation al 2012-10-08T08:32:29Z biological_process owl:Class GO:0099103 biolink:NamedThing channel activator activity Direct interaction with a channel (binding or modification), resulting in its opening. A channel catalyzes energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. tmpzr1t_l9r_go_relaxed.owl channel gating activity molecular_function owl:Class GO:0016937 biolink:NamedThing short-branched-chain-acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue. tmpzr1t_l9r_go_relaxed.owl EC:1.3.99.- molecular_function owl:Class GO:0001401 biolink:NamedThing SAM complex A large complex of the mitochondrial outer membrane that mediates sorting of some imported proteins to the outer membrane and their assembly in the membrane; functions after import of incoming proteins by the mitochondrial outer membrane translocase complex. tmpzr1t_l9r_go_relaxed.owl TOB complex|mitochondrial sorting and assembly machinery complex See also the cellular component term 'mitochondrial outer membrane translocase complex ; GO:0005742'. cellular_component owl:Class GO:0044053 biolink:NamedThing translocation of peptides or proteins into host cell cytoplasm The directed movement of peptides or proteins produced by a symbiont organism to a location within the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl transport of peptides or proteins into host cell cytoplasm|translocation of symbiont peptides or proteins into host cell cytoplasm biological_process owl:Class GO:0019096 biolink:NamedThing pole plasm mitochondrial lrRNA localization Any process in which mitochondrial large ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of mitochondrial lrRNA localization in pole plasm|oocyte pole plasm mitochondrial lrRNA localization|pole plasm mitochondrial lrRNA localisation GO:0048118 biological_process owl:Class GO:0046659 biolink:NamedThing digestive hormone activity The action characteristic of a hormone that takes part in the digestion process. tmpzr1t_l9r_go_relaxed.owl secretin molecular_function owl:Class GO:0048244 biolink:NamedThing phytanoyl-CoA dioxygenase activity Catalysis of the reaction: 2-oxoglutarate + O(2) + phytanoyl-CoA = 2-hydroxyphytanoyl-CoA + CO(2) + succinate. tmpzr1t_l9r_go_relaxed.owl phytanoyl-CoA, 2-oxoglutarate:oxygen oxidoreductase (2-hydroxylating)|phytanoyl-CoA 2-hydroxylase activity|phytanoyl-CoA 2 oxoglutarate dioxygenase activity|phytanoyl-CoA alpha-hydroxylase activity|phytanoyl-CoA hydroxylase activity RHEA:16065|EC:1.14.11.18|KEGG_REACTION:R05722|Reactome:R-HSA-389639|MetaCyc:1.14.11.18-RXN molecular_function owl:Class GO:0042262 biolink:NamedThing DNA protection Any process in which DNA is protected from damage by, for example, oxidative stress. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008803 biolink:NamedThing bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity Catalysis of the reaction: P(1),P(4)-bis(5'-adenosyl) tetraphosphate + H(2)O = 2 ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl diadenosinetetraphosphatase (symmetrical) activity|diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase activity|adenosine tetraphosphate phosphodiesterase activity|diadenosine 5',5'''-P(1),P(4)-tetraphosphate pyrophosphohydrolase activity|symmetrical diadenosine tetraphosphate hydrolase activity|dinucleosidetetraphosphate (symmetrical)|P1,P4-bis(5'-nucleosyl)-tetraphosphate nucleosidebisphosphohydrolase activity|diadenosine 5',5'''-P1,P4-tetraphosphatase activity|Ap4A hydrolase activity|diadenosine tetraphosphatase (symmetrical)|diadenosine tetraphosphate hydrolase activity|diadenosine polyphosphate hydrolase activity|1-P,4-P-bis(5'-nucleosyl)-tetraphosphate nucleosidebisphosphohydrolase activity|dinucleosidetetraphosphatase (symmetrical) activity|bis(5'-adenosyl) tetraphosphatase activity|Ap(4)A hydrolase activity MetaCyc:3.6.1.41-RXN|EC:3.6.1.41|RHEA:24252|KEGG_REACTION:R00125 molecular_function owl:Class GO:0106139 biolink:NamedThing symbiont cell surface The cell surface of a secondary, endosymbiont organism with which the first organism is interacting. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl endosymbiont cell surface hjd 2018-08-15T18:56:57Z cellular_component owl:Class GO:0102664 biolink:NamedThing indole-3-acetyl-leucine synthetase activity Catalysis of the reaction: indole-3-acetate + L-leucine + ATP <=> H+ + indole-3-acetyl-leucine + diphosphoric acid + AMP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2945 molecular_function owl:Class GO:0060784 biolink:NamedThing regulation of cell proliferation involved in tissue homeostasis Any process that modulates the frequency, rate or extent of cell proliferation resulting in the maintenance of a steady-state number of cells within a tissue. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-31T01:46:28Z biological_process owl:Class GO:0050359 biolink:NamedThing tropomyosin kinase activity Catalysis of the reaction: ATP + tropomyosin = ADP + O-phosphotropomyosin. tmpzr1t_l9r_go_relaxed.owl tropomyosin kinase (phosphorylating) activity|STK|ATP:tropomyosin O-phosphotransferase activity MetaCyc:TROPOMYOSIN-KINASE-RXN|EC:2.7.11.28 molecular_function owl:Class GO:0046415 biolink:NamedThing urate metabolic process The chemical reactions and pathways involving urate, the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals. tmpzr1t_l9r_go_relaxed.owl urate metabolism biological_process owl:Class GO:0047369 biolink:NamedThing succinate-hydroxymethylglutarate CoA-transferase activity Catalysis of the reaction: (S)-3-hydroxy-3-methylglutarate + succinyl-CoA = 3-hydroxy-3-methyl-glutaryl-CoA + succinate. tmpzr1t_l9r_go_relaxed.owl dicarboxyl-CoA:dicarboxylic acid coenzyme A transferase activity|succinate:(S)-3-hydroxy-3-methylglutarate CoA-transferase activity|hydroxymethylglutarate coenzyme A-transferase activity MetaCyc:2.8.3.13-RXN|EC:2.8.3.13|RHEA:12284 molecular_function owl:Class GO:0006821 biolink:NamedThing chloride transport The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003860 biolink:NamedThing 3-hydroxyisobutyryl-CoA hydrolase activity Catalysis of the reaction: 3-hydroxy-2-methylpropanoyl-CoA + H2O = CoA + 3-hydroxy-2-methylpropanoate. tmpzr1t_l9r_go_relaxed.owl HIB CoA deacylase activity|3-hydroxy-isobutyryl CoA hydrolase activity|3-hydroxy-2-methylpropanoyl-CoA hydrolase activity MetaCyc:3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN|EC:3.1.2.4|RHEA:20888|Reactome:R-HSA-70881 molecular_function owl:Class GO:0018472 biolink:NamedThing 1-hydroxy-2-naphthaldehyde dehydrogenase activity Catalysis of the reaction: 1-hydroxy-2-naphthaldehyde + NAD+ + H2O = NADH + H+ + 1-hydroxy-2-naphthoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0485 molecular_function owl:Class GO:0140608 biolink:NamedThing cysteine-type endopeptidase activator activity Binds to and increases the activity of a cysteine-type endopeptidase. tmpzr1t_l9r_go_relaxed.owl caspase activator activator activity https://github.com/geneontology/go-ontology/issues/20916 pg 2021-02-18T08:58:58Z molecular_function owl:Class GO:0008780 biolink:NamedThing acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity Catalysis of the reaction: (R)-3-hydroxytetradecanoyl-[acyl-carrier protein] + UDP-N-acetylglucosamine = [acyl-carrier protein] + UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine. tmpzr1t_l9r_go_relaxed.owl acyl-[acyl-carrier protein]-UDP-N-acetylglucosamine O-acyltransferase activity|UDP-N-acetylglucosamine acyltransferase activity|acyl-acyl-carrier-protein-UDP-N-acetylglucosamine O-acyltransferase|uridine diphosphoacetylglucosamine acyltransferase activity|acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase activity|(R)-3-hydroxytetradecanoyl-acyl-carrier-protein:UDP-N-acetylglucosamine 3-O-(3-hydroxytetradecanoyl)transferase activity RHEA:13925|MetaCyc:UDPNACETYLGLUCOSAMACYLTRANS-RXN|EC:2.3.1.129 molecular_function owl:Class GO:0043870 biolink:NamedThing N-acetyl-gamma-aminoadipyl-phosphate reductase activity Catalysis of the reaction: N(2)-acetyl-L-aminoadipate-semialdehyde + NADP+ + phosphate = N(2)-acetyl-L-gamma-aminoadipyl phosphate + NADPH. tmpzr1t_l9r_go_relaxed.owl ArgC|N-acetyl-alpha-glutamyl-phosphate reductase activity|AGPR|N-acetyl-aminoadipate semialdehyde dehydrogenase activity|NAGSA dehydrogenase activity|LysY RHEA:41948|MetaCyc:RXN-5183 This function is part of the prokaryotic alpha-aminoadipate lysine biosynthesis pathway. molecular_function owl:Class GO:0000095 biolink:NamedThing S-adenosyl-L-methionine transmembrane transporter activity Enables the transfer of S-adenosylmethionine from one side of a membrane to the other. S-adenosylmethionine is S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. tmpzr1t_l9r_go_relaxed.owl S-adenosyl methionine permease activity|SAM transmembrane transporter activity|S-adenosylmethionine transmembrane transporter activity|S-adenosyl methionine transporter activity|S-adenosylmethionine permease activity|S-adenosylmethionine transporter activity Reactome:R-HSA-8855062 GO:0015177 molecular_function owl:Class GO:0031908 biolink:NamedThing glyoxysomal lumen The volume enclosed by the membranes of a glyoxysome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047205 biolink:NamedThing quinate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: feruloyl-CoA + quinate = O-feruloylquinate + CoA. tmpzr1t_l9r_go_relaxed.owl hydroxycinnamoyl coenzyme A-quinate transferase activity|feruloyl-CoA:quinate O-(hydroxycinnamoyl)transferase activity RHEA:15021|EC:2.3.1.99|MetaCyc:2.3.1.99-RXN molecular_function owl:Class GO:1901527 biolink:NamedThing abscisic acid-activated signaling pathway involved in stomatal movement Any abscisic acid mediated signaling pathway that is involved in stomatal movement. tmpzr1t_l9r_go_relaxed.owl abscisic acid mediated signalling involved in stomatal movement|abscisic acid mediated signaling pathway involved in stomatal movement tb 2012-10-23T23:09:34Z biological_process owl:Class GO:0005900 biolink:NamedThing oncostatin-M receptor complex A heterodimeric receptor for the cytokine oncostatin-M (OSM). In humans the receptor complex is made up of the gene products gp130 and OSMR-beta. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060295 biolink:NamedThing regulation of cilium movement involved in cell motility Any process that modulates the rate frequency or extent of cilium movement involved in ciliary motility. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036391 biolink:NamedThing medial cortex septin ring A ring-shaped structure that forms at the medial cortex of a symmetrically dividing cell at the onset of cytokinesis; composed of members of the conserved family of filament forming proteins called septins as well as septin-associated proteins. tmpzr1t_l9r_go_relaxed.owl bf 2013-06-06T16:12:06Z cellular_component owl:Class GO:1903611 biolink:NamedThing negative regulation of calcium-dependent ATPase activity Any process that stops, prevents or reduces the frequency, rate or extent of calcium-dependent ATPase activity. tmpzr1t_l9r_go_relaxed.owl down regulation of calcium-dependent ATPase activity|downregulation of calcium-dependent ATPase activity|down-regulation of calcium-dependent ATPase activity|inhibition of calcium-dependent ATPase activity sl 2014-11-18T00:42:57Z biological_process owl:Class GO:0003960 biolink:NamedThing NADPH:quinone reductase activity Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone. tmpzr1t_l9r_go_relaxed.owl quinone oxidoreductase activity|zeta-crystallin activity|NADPH:quinone oxidoreductase activity RHEA:14269|Reactome:R-HSA-6799722|EC:1.6.5.5|MetaCyc:QOR-RXN molecular_function owl:Class GO:0060655 biolink:NamedThing branching involved in mammary gland cord morphogenesis The process in which the branching structure of the mammary gland cord is generated and organized. The mammary gland cord is a solid epithelial structure that will hollow out, forming the mammary duct. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T09:29:32Z biological_process owl:Class GO:0018716 biolink:NamedThing 1-phenanthrol glycosyltransferase activity Catalysis of the reaction: 1-phenanthrol + glucose = 1-phenanthryl-beta-D-glucopyranoside + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0525 molecular_function owl:Class GO:0004079 biolink:NamedThing biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity Catalysis of the reaction: ATP + biotin + apo-(methylmalonyl-CoA:pyruvate carboxytransferase) = AMP + diphosphate + (methylmalonyl-CoA:pyruvate carboxytransferase). tmpzr1t_l9r_go_relaxed.owl methylmalonyl coenzyme A holotranscarboxylase synthetase activity|biotin-methylmalonyl-CoA-carboxyltransferase synthetase|biotin--[methylmalonyl-CoA-carboxyltransferase] synthetase activity|biotin-transcarboxylase synthetase activity|biotin--[methylmalonyl-CoA-carboxyltransferase] ligase activity|biotin-methylmalonyl-CoA-carboxytransferase ligase activity|biotin-methylmalonyl coenzyme A carboxyltransferase synthetase activity|biotin-methylmalonyl-CoA-carboxyltransferase ligase activity|biotin:apomethylmalonyl-CoA:pyruvate carboxyltransferase ligase (AMP-forming)|biotin-methylmalonyl-CoA-carboxytransferase synthetase activity|biotin--[methylmalonyl-CoA-carboxytransferase] synthetase activity|biotin:apomethylmalonyl-CoA:pyruvate carboxytransferase ligase (AMP-forming)|biotin-[methylmalonyl-CoA-carboxyltransferase] ligase activity MetaCyc:6.3.4.9-RXN|RHEA:23668|EC:6.3.4.9 molecular_function owl:Class GO:0097317 biolink:NamedThing invasive growth in response to biotic stimulus The growth of colonies in filamentous chains of cells as a result of a biotic stimulus. An example of this is Candida albicans forming invasive filaments in agar medium in response to a serum stimulus. tmpzr1t_l9r_go_relaxed.owl pr 2012-05-31T10:38:16Z biological_process owl:Class GO:0035080 biolink:NamedThing heat shock-mediated polytene chromosome puffing The decondensing (loosening) and swelling of the chromosomal sites of heat shock genes on polytene chromosomes in response to a heat shock stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061972 biolink:NamedThing dermal bone morphogenesis The process in which bone which forms superficially in the organism are generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T18:16:21Z biological_process owl:Class GO:0052718 biolink:NamedThing tRNA-specific adenosine-34 deaminase complex A protein complex that possesses tRNA-specific adenosine-34 deaminase activity. In eukaryotes the complex is a heterodimer; the subunits are known as Tad2p and Tad3p in yeasts and Adat2 and Adat3 in human. tmpzr1t_l9r_go_relaxed.owl tRNA-A34 deaminase complex ai 2011-08-12T11:53:26Z cellular_component owl:Class GO:1901198 biolink:NamedThing positive regulation of calcium ion transport into cytosol involved in cellular response to calcium ion Any positive regulation of calcium ion transport into cytosol that is involved in cellular response to calcium ion. tmpzr1t_l9r_go_relaxed.owl positive regulation of calcium ion transport into cytosol involved in cellular response to Ca2+ ion al 2012-07-27T11:07:43Z biological_process owl:Class GO:1902793 biolink:NamedThing glutamate decarboxylase complex A protein complex which is capable of glutamate decarboxylase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is GAD1 in human (Q99259) in PMID:17384644 (inferred from direct assay). bhm 2014-03-24T10:59:45Z cellular_component owl:Class GO:1905325 biolink:NamedThing regulation of meiosis I spindle assembly checkpoint Any process that modulates the frequency, rate or extent of the meiosis I spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl mah 2016-07-20T12:48:40Z biological_process owl:Class GO:0030268 biolink:NamedThing methylenetetrahydromethanopterin dehydrogenase activity Catalysis of the reaction: 5,10-methylenetetrahydromethanopterin + coenzyme F420 + 2 H(+) = 5,10-methenyl-5,6,7,8-tetrahydromethanopterin + reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase activity|5,10-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity|5,10-methylenetetrahydromethanopterin dehydrogenase activity MetaCyc:1.5.99.9-RXN|KEGG_REACTION:R04456|RHEA:16721|UM-BBD_reactionID:r0348|EC:1.5.98.1 GO:0018536 molecular_function owl:Class GO:1905593 biolink:NamedThing positive regulation of optical nerve axon regeneration Any process that activates or increases the frequency, rate or extent of optical nerve axon regeneration. tmpzr1t_l9r_go_relaxed.owl activation of optical nerve axon regeneration|upregulation of optical nerve axon regeneration|up-regulation of optical nerve axon regeneration|up regulation of optical nerve axon regeneration pga 2016-10-25T12:58:58Z biological_process owl:Class GO:1904673 biolink:NamedThing negative regulation of somatic stem cell population maintenance Any process that stops, prevents or reduces the frequency, rate or extent of somatic stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl downregulation of somatic stem cell population maintenance|down-regulation of somatic stem cell population maintenance|down regulation of somatic stem cell population maintenance|inhibition of somatic stem cell population maintenance rph 2015-09-14T08:40:25Z biological_process owl:Class GO:1904609 biolink:NamedThing cellular response to monosodium L-glutamate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosodium L-glutamate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-27T18:43:14Z biological_process owl:Class GO:0120023 biolink:NamedThing somatostatin binding Binding to somatostatin, a polypeptide hormone involved in regulating pancreatic alpha and pancreatic beta cells and controlling growth hormone secretion as well as many other functions. Somatostatin is produced by several cell types including pancreatic delta cells. There are several different mature forms of somatostatin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13143 krc 2017-03-17T14:54:21Z molecular_function owl:Class GO:0102549 biolink:NamedThing 1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity Catalysis of the reaction: 1-18:1-2-16:0-monogalactosyldiacylglycerol + H2O <=> sn-1-lyso-2-16:0-monogalactosyldiacylglycerol + oleate + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.26|MetaCyc:RXN-14912 molecular_function owl:Class GO:0004418 biolink:NamedThing hydroxymethylbilane synthase activity Catalysis of the reaction: H(2)O + 4 porphobilinogen = hydroxymethylbilane + 4 NH(4)(+). tmpzr1t_l9r_go_relaxed.owl pre-uroporphyrinogen synthase activity|(4-(2-carboxyethyl)-3-(carboxymethyl)pyrrol-2-yl)methyltransferase (hydrolyzing) activity|uroporphyrinogen synthetase activity|porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)|uroporphyrinogen synthase activity|(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)|porphobilinogen deaminase activity|porphobilinogen ammonia-lyase (polymerizing)|uroporphyrinogen I synthetase activity|HMB-synthase activity|uroporphyrinogen I synthase activity RHEA:13185|MetaCyc:OHMETHYLBILANESYN-RXN|EC:2.5.1.61|KEGG_REACTION:R00084|Reactome:R-HSA-189406 Note that this function was formerly EC:4.3.1.8. molecular_function owl:Class GO:0097219 biolink:NamedThing compound sieve plate A sieve plate that contains several specialized sieve areas in either a scalariform or reticulate arrangement. tmpzr1t_l9r_go_relaxed.owl Often located on an end wall of a sieve tube member. Unspecialized sieve areas may occur on other parts of the cell. pr 2012-01-13T05:45:23Z cellular_component owl:Class GO:0003409 biolink:NamedThing optic cup structural organization The process that contributes to creating the structural organization of the optic cup. This process pertains to the physical shaping of the rudimentary structure. tmpzr1t_l9r_go_relaxed.owl optic cup structural organisation dph 2009-12-21T02:44:20Z biological_process owl:Class GO:0019654 biolink:NamedThing acetate fermentation The anaerobic chemical reactions and pathways resulting in the breakdown of acetate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:P142-PWY biological_process owl:Class GO:0072386 biolink:NamedThing plus-end-directed organelle transport along microtubule The directed movement of an organelle towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an organelle to a microtubule, and ends when the organelle reaches its final destination. tmpzr1t_l9r_go_relaxed.owl microtubule plus-end-directed organelle distribution|microtubule plus-end-directed organelle localization mah 2010-12-01T05:02:09Z biological_process owl:Class GO:0031533 biolink:NamedThing mRNA cap methyltransferase complex A protein complex that consists of an RNA 5' triphosphatase and a guanyl transferase (Cet1p and Ceg1p in S. cerevisiae; Pct1 and Ceg1 in S. pombe) and is involved in mRNA capping. tmpzr1t_l9r_go_relaxed.owl mRNA (guanine-N7) methyltransferase complex|mRNA capping enzyme complex cellular_component owl:Class GO:0045964 biolink:NamedThing positive regulation of dopamine metabolic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving dopamine. tmpzr1t_l9r_go_relaxed.owl activation of dopamine metabolic process|up-regulation of dopamine metabolic process|positive regulation of dopamine metabolism|stimulation of dopamine metabolic process|upregulation of dopamine metabolic process|up regulation of dopamine metabolic process biological_process owl:Class GO:0021659 biolink:NamedThing rhombomere 3 structural organization The process that contributes to creating the structural organization of rhombomere 3. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 3 structural organisation biological_process owl:Class GO:0120269 biolink:NamedThing ciliary centrin arm A rod-shaped protein complex containing Centrin4 protein that flanks the flagellum attachment zone (FAZ) filament and the quartet microtubules. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20062 Note that cilia and eukaryotic flagella are deemed to be equivalent. In diplomonad species, such as Giardia, the axoneme may extend intracellularly up to 5um away from the plane of the plasma membrane. krc 2020-09-30T18:20:22Z cellular_component owl:Class GO:0031819 biolink:NamedThing P2Y10 nucleotide receptor binding Binding to a P2Y10 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y10 nucleotide receptor ligand molecular_function owl:Class GO:0102688 biolink:NamedThing dihydrozeatin UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + dihydrozeatin <=> H+ + 9-(alpha-D-glucosyl)dihydrozeatin + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4725 molecular_function owl:Class GO:0047785 biolink:NamedThing cortisol sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + cortisol = adenosine 3',5'-diphosphate + cortisol 21-sulfate + H(+). tmpzr1t_l9r_go_relaxed.owl glucocorticoid sulfotransferase activity|cortisol sulphotransferase activity|3'-phosphoadenylyl-sulfate:cortisol 21-sulfotransferase activity|glucocorticosteroid sulfotransferase activity KEGG_REACTION:R02839|MetaCyc:CORTISOL-SULFOTRANSFERASE-RXN|EC:2.8.2.18|RHEA:11884 molecular_function owl:Class GO:0006607 biolink:NamedThing NLS-bearing protein import into nucleus The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl NLS-bearing substrate import into nucleus|NLS-bearing substrate import into cell nucleus|NLS-bearing substrate transport from cytoplasm to nucleus|NLS-bearing substrate-nucleus import biological_process owl:Class GO:0042620 biolink:NamedThing poly(3-hydroxyalkanoate) metabolic process The chemical reactions and pathways involving poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria. tmpzr1t_l9r_go_relaxed.owl poly(3-hydroxyalkanoate) metabolism|PHA metabolism|PHA metabolic process biological_process owl:Class GO:0004157 biolink:NamedThing dihydropyrimidinase activity Catalysis of the reaction: 5,6-dihydrouracil + H2O = 3-ureidopropionate. tmpzr1t_l9r_go_relaxed.owl hydantoin peptidase activity|hydropyrimidine hydrase activity|pyrimidine hydrase activity|5,6-dihydropyrimidine amidohydrolase activity|D-hydantoinase activity|hydantoinase activity EC:3.5.2.2|Reactome:R-HSA-73618|MetaCyc:DIHYDROPYRIMIDINASE-RXN|Reactome:R-HSA-73589|RHEA:16121 molecular_function owl:Class GO:0048924 biolink:NamedThing posterior lateral line neuromast mantle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast mantle cell. (N.B. This may be development of neuromast mantle cell type or a set of cells of neuromast mantle cell type. This will involve the change of a cell or set of cells from one cell identity to another). Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051391 biolink:NamedThing tRNA acetylation The modification of tRNA structure by addition of an acetyl group to tRNA. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043964 biolink:NamedThing induction by symbiont of host adenylate cyclase-mediated signal transduction Any process in which an organism activates, maintains or increases the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host adenylate cyclase-mediated signal transduction biological_process owl:Class GO:0043963 biolink:NamedThing modulation by symbiont of host adenylate cyclase-mediated signal transduction Any process in which the symbiont modulates the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030034 biolink:NamedThing microvillar actin bundle assembly Assembly of the parallel bundle of actin filaments at the core of a microvillus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047259 biolink:NamedThing glucomannan 4-beta-mannosyltransferase activity Catalysis of the reaction: glucomannan(n) + GDP-mannose = glucomannan(n+1) + GDP. tmpzr1t_l9r_go_relaxed.owl glucomannan 4-b-mannosyltransferase activity|GDP-mannose:glucomannan 1,4-beta-D-mannosyltransferase activity|glucomannan-synthase activity|GDP-man-beta-mannan mannosyltransferase activity EC:2.4.1.32|MetaCyc:2.4.1.32-RXN molecular_function owl:Class GO:1990417 biolink:NamedThing snoRNA release from pre-rRNA The release of snoRNA from pre-rRNA. tmpzr1t_l9r_go_relaxed.owl An example of this process is yeast HAS1 from PMID:16908538, inferred from mutant phenotype assay. rb 2014-07-11T21:43:27Z biological_process owl:Class GO:0009088 biolink:NamedThing threonine biosynthetic process The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl threonine anabolism|threonine biosynthesis|threonine formation|threonine synthesis MetaCyc:HOMOSER-THRESYN-PWY|MetaCyc:THRESYN-PWY biological_process owl:Class GO:0102496 biolink:NamedThing GA5 2,3 epoxidase activity Catalysis of the reaction: gibberellin A5 + O2 + 2-oxoglutarate <=> gibberellin A6 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14327 molecular_function owl:Class GO:0070437 biolink:NamedThing Grb2-Shc complex A protein complex that contains Grb2 and the adaptor protein Shc, and is involved in linking epidermal growth factor receptor (EGFR) activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Grb2-Shc complex, EGF stimulated cellular_component owl:Class GO:0008764 biolink:NamedThing UDP-N-acetylmuramoylalanine-D-glutamate ligase activity Catalysis of the reaction: D-glutamate + ATP + UDP-N-acetylmuramoyl-L-alanine = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase activity|UDP-N-acetylmuramoyl-L-alanine:glutamate ligase (ADP-forming)|UDP-Mur-NAC-L-Ala:D-Glu ligase activity|uridine diphospho-N-acetylmuramoylalanyl-D-glutamate synthetase activity|D-glutamate-adding enzyme activity|D-glutamate ligase activity|MurD synthetase activity EC:6.3.2.9|MetaCyc:UDP-NACMURALA-GLU-LIG-RXN|KEGG_REACTION:R02783|RHEA:16429 molecular_function owl:Class GO:0003962 biolink:NamedThing cystathionine gamma-synthase activity Catalysis of the reaction: O-succinyl-L-homoserine + L-cysteine = cystathionine + succinate. tmpzr1t_l9r_go_relaxed.owl CTT gamma synthase activity|O-succinyl-L-homoserine (thiol)-lyase activity|cystathionine synthase activity|homoserine O-transsuccinylase activity|cystathionine gamma synthase activity|cystathionine synthetase activity|O-succinylhomoserine (thiol)-lyase activity|O-succinylhomoserine synthetase activity|cystathionine g-synthase activity|O-succinyl-L-homoserine succinate-lyase activity|homoserine transsuccinylase activity|O4-succinyl-L-homoserine:L-cysteine S-(3-amino-3-carboxypropyl)transferase activity|O-succinyl-L-homoserine succinate-lyase (adding cysteine) activity|O-succinylhomoserine synthase activity RHEA:20397|MetaCyc:O-SUCCHOMOSERLYASE-RXN|EC:2.5.1.48 GO:0000505 molecular_function owl:Class GO:0034790 biolink:NamedThing 3,4-dihydroxy-3,4-dihydrofluorene dehydrogenase activity Catalysis of the reaction: (+)-(3S,4R)-cis-3,4-dihydroxy-3,4-dihydrofluorene = 3,4-dihydroxyfluorene + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1043 molecular_function owl:Class GO:0047199 biolink:NamedThing phosphatidylcholine-dolichol O-acyltransferase activity Catalysis of the reaction: 1,2-diacyl-sn-glycero-3-phosphocholine + dolichol = 1-acyl-sn-glycero-3-phosphocholine + acyldolichol. tmpzr1t_l9r_go_relaxed.owl 3-sn-phosphatidylcholine:dolichol O-acyltransferase activity KEGG_REACTION:R04227|RHEA:19285|EC:2.3.1.83|MetaCyc:2.3.1.83-RXN molecular_function owl:Class GO:0018820 biolink:NamedThing cyanamide hydratase activity Catalysis of the reaction: urea = cyanamide + H(2)O. tmpzr1t_l9r_go_relaxed.owl urea hydro-lyase (cyanamide-forming)|urea hydro-lyase activity EC:4.2.1.69|KEGG_REACTION:R00778|MetaCyc:CYANAMIDE-HYDRATASE-RXN|UM-BBD_reactionID:r0668|RHEA:23056 molecular_function owl:Class GO:0004412 biolink:NamedThing homoserine dehydrogenase activity Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:HOMOSERDEHYDROG-RXN|RHEA:15761|EC:1.1.1.3 molecular_function owl:Class GO:0062040 biolink:NamedThing fungal biofilm matrix An extracellular matrix lying external to fungal cells. The fungal biofilm matrix consists of polysaccharides, proteins, lipids, and nucleic acids. Fungal biofilms mediate adherence to host tissues, and provide protection from host immune defenses. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-04T12:54:39Z cellular_component owl:Class GO:2000025 biolink:NamedThing regulation of leaf formation Any process that modulates the frequency, rate or extent of leaf formation. tmpzr1t_l9r_go_relaxed.owl tb 2010-08-05T11:25:37Z biological_process owl:Class GO:0090059 biolink:NamedThing protoxylem development The process whose specific outcome is the progression of the protoxylem over time, from its formation to the mature structure. The protoxylem comprises the first formed elements of the primary xylem. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-11T03:08:06Z biological_process owl:Class GO:0007087 biolink:NamedThing mitotic nuclear pore complex reassembly The cell cycle process in which nuclear pore complexes reform during mitotic cell division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097462 biolink:NamedThing Lewy neurite Elongated neuronal process, often with side branches and more than one branching point, described in brains of patients with Parkinson's disease. Lewy neurites stain positively for ubiquitin in brainstem and forebrain regions affected in Parkinson's disease. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao601362597 pr 2012-12-21T07:57:58Z cellular_component owl:Class GO:0035632 biolink:NamedThing mitochondrial prohibitin complex A complex composed of two proteins, prohibitin 1 and prohibitin 2 (PHB1/PHB-1 and PHB2/PHB-2) that is highly conserved amongst eukaryotes and associated with the inner mitochondrial membrane. The mitochondrial prohibitin complex is a macromolecular supercomplex composed of repeating heterodimeric subunits of PHB1 and PHB2. The mitochondrial prohibitin complex plays a role in a number of biological processes, including mitochondrial biogenesis and function, development, replicative senescence, and cell death. tmpzr1t_l9r_go_relaxed.owl mitochondrial inner membrane prohibitin complex bf 2010-12-21T10:38:59Z cellular_component owl:Class GO:0030170 biolink:NamedThing pyridoxal phosphate binding Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106063 biolink:NamedThing G protein-coupled folate receptor activity Combining with folate and transmitting the signal from one side of the membrane to the other by activating an associated G-protein, initiating a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G-protein coupled folic acid receptor activity|G-protein coupled folate receptor activity hjd 2017-10-27T17:10:07Z molecular_function owl:Class GO:1990224 biolink:NamedThing NMN phosphatase activity Catalysis of the reaction: beta-nicotinamide D-ribonucleotide (NMN-) + H2O = beta-nicotinamide D-riboside (nicotinamide ribose, NmR) + phosphate. tmpzr1t_l9r_go_relaxed.owl nicotinamide mononucleotide phosphatase activity|beta-nicotinamide D-ribonucleotide phosphatase activity RHEA:30815 rb 2013-10-21T18:03:41Z molecular_function owl:Class GO:0102948 biolink:NamedThing luteolin C-glucosyltransferase activity Catalysis of the reaction: 2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-olate luteolin-7-olate + a glucosylated glucose acceptor = isoorientin + a non glucosylated glucose acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9081 molecular_function owl:Class GO:0047596 biolink:NamedThing 6-methylsalicylate decarboxylase activity Catalysis of the reaction: 6-methylsalicylate + H(+) = 3-cresol + CO(2). tmpzr1t_l9r_go_relaxed.owl 6-methylsalicylate carboxy-lyase activity|6-methylsalicylic acid (2,6-cresotic acid) decarboxylase activity|6-MSA decarboxylase activity|6-methylsalicylate carboxy-lyase (3-cresol-forming) EC:4.1.1.52|KEGG_REACTION:R03567|RHEA:23112|MetaCyc:6-METHYLSALICYLATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0062131 biolink:NamedThing 3-butenylglucosinolate 2-hydroxylase activity Catalysis of the reaction: gluconapin + a reduced electron acceptor + O2 = xi-progoitrin + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl But-3-enyl Glucosinolate-2-hydroxylase activity RHEA:60628|MetaCyc:RXNQT-4343 dph 2019-06-24T16:45:18Z molecular_function owl:Class GO:0097467 biolink:NamedThing type III terminal bouton Terminal inflated portion of the axon of a non-glutamatergic neuron, containing the specialized apparatus necessary to release neurotransmitters at a regulatory synapse. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it. Type III terminal boutons are larger than type II ones. tmpzr1t_l9r_go_relaxed.owl type III terminal button pr 2013-02-06T09:39:18Z cellular_component owl:Class GO:0050608 biolink:NamedThing vanillin dehydrogenase activity Catalysis of the reaction: H(2)O + NAD(+) + vanillin = 2 H(+) + NADH + vanillate. tmpzr1t_l9r_go_relaxed.owl vanillin:NAD+ oxidoreductase activity MetaCyc:1.2.1.67-RXN|KEGG_REACTION:R05699|RHEA:13309|EC:1.2.1.67 molecular_function owl:Class GO:0106293 biolink:NamedThing NADH oxidase H202-forming activity Catalysis of the reaction: NADH + H+ + O2 = NAD + hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl RHEA:11264 hjd 2020-08-19T17:35:22Z molecular_function owl:Class GO:0039721 biolink:NamedThing peristromal region viral factory A nuclear viral factory formed at the periphery of the host cell nucleus by Baculoviruses. tmpzr1t_l9r_go_relaxed.owl PR bf 2013-12-19T15:54:00Z cellular_component owl:Class GO:0051989 biolink:NamedThing coproporphyrinogen dehydrogenase activity Catalysis of the reaction: coproporphyrinogen III + 2 S-adenosyl-L-methionine = protoporphyrinogen IX + 2 CO2 + 2 L-methionine + 2 5'-deoxyadenosine. tmpzr1t_l9r_go_relaxed.owl HemN|coproporphyrinogen-III:S-adenosyl-L-methionine oxidoreductase (decarboxylating)|oxygen-independent coproporphyrinogen-III oxidase activity|radical SAM enzyme activity|coproporphyrinogen III oxidase activity EC:1.3.98.3|RHEA:15425|MetaCyc:HEMN-RXN molecular_function owl:Class GO:0017125 biolink:NamedThing deoxycytidyl transferase activity Catalysis of the insertion of a dCMP residue opposite a template abasic site in DNA. tmpzr1t_l9r_go_relaxed.owl deoxycytidyl transferase activity, template-dependent Reactome:R-HSA-110308 GO:0019986 molecular_function owl:Class GO:0042334 biolink:NamedThing taxis to electron acceptor The directed movement of a motile cell or organism in response to the presence of an alternative electron acceptor, for example, nitrate. tmpzr1t_l9r_go_relaxed.owl taxis in response to electron acceptor biological_process owl:Class GO:0072371 biolink:NamedThing histone kinase activity (H2A-S121 specific) Catalysis of the transfer of a phosphate group to the serine-121 residue of the N-terminal tail of histone H2A. tmpzr1t_l9r_go_relaxed.owl histone-serine kinase activity (H2A-S121 specific)|histone serine kinase activity (H2A-S121 specific) mah 2010-11-16T03:42:59Z molecular_function owl:Class GO:0061593 biolink:NamedThing sulfoquinovose isomerase activity Catalysis of the reaction sulfoquinovose = 6-deoxy-6-sulfofructose. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-10T09:56:04Z molecular_function owl:Class GO:0034867 biolink:NamedThing 2,4,4-trimethylpent-2-enoyl-CoA hydratase activity Catalysis of the reaction: 2,4,4-trimethylpent-2-enoyl-CoA + H2O = 2,4,4-trimethyl-3-hydroxypentanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1277 molecular_function owl:Class GO:0032942 biolink:NamedThing inositol tetrakisphosphate 2-kinase activity Catalysis of the reaction: 1D-myo-inositol tetrakisphosphate + ATP = 1D-myo-inositol pentakisphosphate (containing 2-phosphate) + ADP. tmpzr1t_l9r_go_relaxed.owl 1D-myo-inositol-tetrakisphosphate 2-kinase activity|inositol 1,3,4,6-tetrakisphosphate 2-kinase activity|inositol-tetrakisphosphate 2-kinase activity EC:2.7.1.- molecular_function owl:Class GO:0085042 biolink:NamedThing periarbuscular membrane A host-derived membrane surrounding the symbiont arbuscule during symbiosis. tmpzr1t_l9r_go_relaxed.owl See also: arbuscule ; GO:0085041. jl 2010-07-27T04:31:37Z cellular_component owl:Class GO:0036334 biolink:NamedThing epidermal stem cell homeostasis Any biological process involved in the maintenance of the steady-state number of epidermal stem cells within a population of cells. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-05T10:21:23Z biological_process owl:Class GO:0061412 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of amino acids. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-12T12:54:05Z biological_process owl:Class GO:0032294 biolink:NamedThing peripheral nervous system non-myelinated axon ensheathment The process in which a non-myelinating Schwann cell membrane encircles an axon in the peripheral nervous system. A single non-myelinating Schwann cell will typically associate with multiple axons. tmpzr1t_l9r_go_relaxed.owl ensheathment of non-myelinated axons in peripheral nervous system biological_process owl:Class GO:0010148 biolink:NamedThing transpiration Release of water by the plant into the air as water vapor mainly through leaves. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Transpiration biological_process owl:Class GO:0140226 biolink:NamedThing RNA topoisomerase activity Catalysis of the transient cleavage and passage of individual RNA strands or double helices through one another, resulting a topological transformation in RNA. tmpzr1t_l9r_go_relaxed.owl pg 2018-05-29T11:06:37Z molecular_function owl:Class GO:0008358 biolink:NamedThing maternal determination of anterior/posterior axis, embryo The specification of the anterior/posterior axis of the embryo by gradients of maternally-transcribed gene products; exemplified in insects by the morphogens, bicoid and nanos. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004978 biolink:NamedThing corticotropin receptor activity Combining with corticotropin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl ACTH receptor activity|adrenocorticotropin receptor activity|adrenocorticotropic hormone receptor activity molecular_function owl:Class GO:0051916 biolink:NamedThing granulocyte colony-stimulating factor binding Binding to granulocyte colony-stimulating factor, G-CSF. tmpzr1t_l9r_go_relaxed.owl granulocyte colony stimulating factor binding|G-CSF binding molecular_function owl:Class GO:0061969 biolink:NamedThing maintenance of left sidedness The organization process that preserves the left sidedness in an organism's body plan or part of an organism with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T16:41:30Z biological_process owl:Class GO:0004078 biolink:NamedThing biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity Catalysis of the reaction: ATP + biotin + apo-(3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)) = AMP + diphosphate + (3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)). tmpzr1t_l9r_go_relaxed.owl biotin-methylcrotonoyl-CoA-carboxylase synthetase|biotin--[methylcrotonoyl-CoA-carboxylase] synthetase activity|biotin:apo-3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming) ligase (AMP-forming)|biotin-methylcrotonoyl-CoA-carboxylase ligase activity|beta-methylcrotonyl coenzyme A holocarboxylase synthetase activity|biotin-beta-methylcrotonyl coenzyme A carboxylase synthetase activity RHEA:24376|MetaCyc:6.3.4.11-RXN|EC:6.3.4.11 molecular_function owl:Class GO:1900333 biolink:NamedThing regulation of methane biosynthetic process from 3-(methylthio)propionic acid Any process that modulates the frequency, rate or extent of methane biosynthetic process from 3-(methylthio)propionic acid. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-06T01:56:13Z biological_process owl:Class GO:0003841 biolink:NamedThing 1-acylglycerol-3-phosphate O-acyltransferase activity Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol-3-phosphate = CoA + 1,2-diacyl-sn-glycerol-3-phosphate. tmpzr1t_l9r_go_relaxed.owl 1-acyl-sn-glycerol 3-phosphate acyltransferase activity|1-acylglycero-3-phosphate acyltransferase activity|acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase activity|1-acylglycerophosphate acyltransferase activity|lysophosphatidic acid-acyltransferase activity|lysophosphatidate acyltransferase activity|1-acyl-sn-glycero-3-phosphate acyltransferase activity|1-acylglycerolphosphate acyltransferase activity|1-acyl-sn-glycerol-3-phosphate acyltransferase activity Reactome:R-HSA-1482636|Reactome:R-HSA-8849345|Reactome:R-HSA-1482548|MetaCyc:RXN-1623|Reactome:R-HSA-1482598|Reactome:R-HSA-75885|Reactome:R-HSA-1482667|Reactome:R-HSA-1482894|Reactome:R-HSA-1482539|Reactome:R-HSA-1482547|RHEA:19709|EC:2.3.1.51|Reactome:R-HSA-1482689 GO:0004469 molecular_function owl:Class GO:0004069 biolink:NamedThing L-aspartate:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl oxaloacetate-aspartate aminotransferase activity|L-aspartate transaminase activity|aspartic acid aminotransferase activity|glutamic--aspartic transaminase activity|oxaloacetate transferase activity|L-aspartate-2-oxoglutarate aminotransferase activity|transaminase A activity|aspartic aminotransferase activity|AAT|aspartate aminotransferase activity|L-aspartate-2-ketoglutarate aminotransferase activity|2-oxoglutarate-glutamate aminotransferase activity|glutamic-oxalacetic transaminase activity|glutamate oxaloacetate transaminase activity|L-aspartic aminotransferase activity|aspartate transaminase activity|glutamic--oxaloacetic transaminase activity|aspartate alpha-ketoglutarate transaminase activity|glutamate-oxalate transaminase activity|aspartate:2-oxoglutarate aminotransferase activity|L-aspartate-alpha-ketoglutarate transaminase activity|aspartyl aminotransferase activity|L-aspartate-2-oxoglutarate-transaminase activity|glutamic oxalic transaminase activity|glutamic-aspartic aminotransferase activity|AspT|GOT (enzyme)|glutamate-oxalacetate aminotransferase activity|aspartate-2-oxoglutarate transaminase activity Reactome:R-HSA-70581|EC:2.6.1.1|Reactome:R-HSA-70592|KEGG_REACTION:R00355|Reactome:R-HSA-70613|Reactome:R-HSA-70596|MetaCyc:ASPAMINOTRANS-RXN|RHEA:21824 molecular_function owl:Class GO:0072631 biolink:NamedThing interleukin-29 production The appearance of interleukin-29 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL29 production|IL-29 production|interleukin-29 secretion|interferon lambda 1 production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072632 biological_process owl:Class GO:0002173 biolink:NamedThing low-affinity IgM receptor activity Combining with low affinity with an immunoglobulin of an IgM isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl low affinity IgM receptor activity hjd 2010-05-06T05:04:24Z molecular_function owl:Class GO:0047716 biolink:NamedThing imidazole N-acetyltransferase activity Catalysis of the reaction: 1H-imidazole + acetyl-CoA = N-acetylimidazole + CoA. tmpzr1t_l9r_go_relaxed.owl imidazole acetylase activity|imidazole acetyltransferase activity|acetyl-CoA:imidazole N-acetyltransferase activity RHEA:15813|KEGG_REACTION:R03621|MetaCyc:IMIDAZOLE-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.2 molecular_function owl:Class GO:0102334 biolink:NamedThing N,N'-diacetylbacilliosaminyl-1-phosphate transferase activity Catalysis of the reaction: ditrans,polycis-undecaprenyl phosphate + UDP-N,N'-diacetylbacillosamine <=> N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UMP. tmpzr1t_l9r_go_relaxed.owl RHEA:34515|EC:2.7.8.36|MetaCyc:RXN-13269 molecular_function owl:Class GO:0035577 biolink:NamedThing azurophil granule membrane The lipid bilayer surrounding an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid. tmpzr1t_l9r_go_relaxed.owl primary granule membrane bf 2010-10-05T01:29:10Z cellular_component owl:Class GO:0033434 biolink:NamedThing AUC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AUC codon. tmpzr1t_l9r_go_relaxed.owl ATC codon-amino acid adaptor activity|isoleucine tRNA Note that in the standard genetic code, ATC codes for isoleucine. molecular_function owl:Class GO:0018794 biolink:NamedThing 2-hydroxyisobutyrate decarboxylase activity Catalysis of the reaction: 2-hydroxyisobutyrate + H+ = CO2 + 2-propanol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0617 molecular_function owl:Class GO:2001132 biolink:NamedThing methane biosynthetic process from 3-(methylthio)propionic acid The chemical reactions and pathways resulting in the formation of a methane from a 3-(methylthio)propionic acid. tmpzr1t_l9r_go_relaxed.owl jl 2011-10-13T12:19:33Z biological_process owl:Class GO:0050477 biolink:NamedThing acyl-lysine deacylase activity Catalysis of the reaction: H2O + N6-acyl-L-lysine = L-lysine + a carboxylate. tmpzr1t_l9r_go_relaxed.owl epsilon-lysine acylase activity|N6-acyl-L-lysine amidohydrolase activity|6-N-acyl-L-lysine amidohydrolase activity MetaCyc:ACYL-LYSINE-DEACYLASE-RXN|EC:3.5.1.17|RHEA:24548 molecular_function owl:Class GO:0018313 biolink:NamedThing peptide cross-linking via L-alanyl-5-imidazolinone glycine The formation of a protein active site cross-link from the alpha-carboxyl carbon of residue N, an alanine, to the alpha-amino nitrogen of residue N+2, a glycine, coupled with the formation of a double bond to the alpha-amino nitrogen of residue N+1 which loses one hydrogen, and the loss of a molecule of water. tmpzr1t_l9r_go_relaxed.owl RESID:AA0187 biological_process owl:Class GO:0099176 biolink:NamedThing regulation of retrograde trans-synaptic signaling by trans-synaptic protein complex Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by a trans-synaptic complex. tmpzr1t_l9r_go_relaxed.owl regulation of trans-synaptic complex mediated retrograde trans-synaptic signaling biological_process owl:Class GO:0044495 biolink:NamedThing modulation of blood pressure in other organism A process by which one organism modulates the force with which blood travels through the circulatory system of another organism. tmpzr1t_l9r_go_relaxed.owl regulation of blood pressure in other organism jl 2012-02-01T02:10:15Z biological_process owl:Class GO:0035728 biolink:NamedThing response to hepatocyte growth factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hepatocyte growth factor stimulus. tmpzr1t_l9r_go_relaxed.owl response to hepatocyte growth factor stimulus|response to HGF stimulus bf 2011-03-10T03:02:47Z biological_process owl:Class GO:0048249 biolink:NamedThing high-affinity phosphate transmembrane transporter activity Enables the transfer of phosphate from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity phosphate transmembrane transporter activity molecular_function owl:Class GO:0032685 biolink:NamedThing negative regulation of granulocyte macrophage colony-stimulating factor production Any process that stops, prevents, or reduces the frequency, rate, or extent of granulocyte macrophage colony-stimulating factor production. tmpzr1t_l9r_go_relaxed.owl down regulation of granulocyte macrophage colony-stimulating factor production|negative regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|down-regulation of granulocyte macrophage colony-stimulating factor production|inhibition of granulocyte macrophage colony-stimulating factor production|negative regulation of GM-CSF production|downregulation of granulocyte macrophage colony-stimulating factor production|negative regulation of granulocyte macrophage colony stimulating factor production GO:0045424 biological_process owl:Class GO:0050633 biolink:NamedThing acetyl-CoA C-myristoyltransferase activity Catalysis of the reaction: myristoyl-CoA + acetyl-CoA = 3-oxopalmitoyl-CoA + CoA. tmpzr1t_l9r_go_relaxed.owl 3-oxopalmitoyl-CoA-CoA acetyltransferase activity|myristoyl-CoA:acetyl-CoA C-myristoyltransferase activity|3-oxopalmitoyl-CoA hydrolase activity|myristoyl-CoA C-acetyltransferase activity MetaCyc:2.3.1.155-RXN|EC:2.3.1.155|RHEA:18161 molecular_function owl:Class GO:0043864 biolink:NamedThing indoleacetamide hydrolase activity Catalysis of the reaction: indole-3-acetamide + H2O = indole-3-acetate + NH3. Indole-3-acetamide is known as IAM and indole-3-acetate as IAA. tmpzr1t_l9r_go_relaxed.owl Tms2|IaaH|indole-3-acetamide hydrolase activity|indole acetamide hydrolase activity|IAH EC:3.5.1.4|MetaCyc:G-5841|RHEA:34371 molecular_function owl:Class GO:0039556 biolink:NamedThing MDA-5 binding Binding to MDA-5, a cytosolic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral dsRNA. tmpzr1t_l9r_go_relaxed.owl MDA5 binding bf 2012-03-09T04:12:33Z molecular_function owl:Class GO:0046600 biolink:NamedThing negative regulation of centriole replication Any process that stops, prevents, or reduces the frequency, rate or extent of centriole replication. tmpzr1t_l9r_go_relaxed.owl down-regulation of centriole replication|inhibition of centriole replication|downregulation of centriole replication|down regulation of centriole replication biological_process owl:Class GO:0071979 biolink:NamedThing cytoskeleton-mediated cell swimming Cell motility in which contractile cytoskeletal elements alter cell shape, resulting in the smooth movement of a cell through a liquid medium. tmpzr1t_l9r_go_relaxed.owl cytoskeleton-mediated swimming motility mah 2010-10-21T03:02:36Z biological_process owl:Class GO:2000019 biolink:NamedThing negative regulation of male gonad development Any process that stops, prevents, or reduces the frequency, rate or extent of male gonad development. tmpzr1t_l9r_go_relaxed.owl negative regulation of testicular development|negative regulation of testis development jl 2010-07-15T03:29:10Z biological_process owl:Class GO:0047631 biolink:NamedThing ADP-ribose diphosphatase activity Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl adenosine diphosphoribose pyrophosphatase activity|ADP-ribose pyrophosphatase activity|ADP-ribose ribophosphohydrolase activity|ADPribose pyrophosphatase activity|ADPR-PPase activity|ADPribose diphosphatase activity|ADP-ribose phosphohydrolase activity RHEA:10412|Reactome:R-HSA-2393954|EC:3.6.1.13|Reactome:R-HSA-5696049|MetaCyc:RXN0-1441|Reactome:R-HSA-2393939 molecular_function owl:Class GO:0030341 biolink:NamedThing chondroitin AC lyase activity Catalysis of the eliminative degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucuronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups. tmpzr1t_l9r_go_relaxed.owl chondroitin sulfate lyase activity|chondroitin lyase activity|ChnAC|chondroitinase activity|chondroitinase AC|chondroitin AC eliminase activity MetaCyc:4.2.2.5-RXN|EC:4.2.2.5 molecular_function owl:Class GO:0039641 biolink:NamedThing viral inner membrane The lipid bilayer of a virion contained inside the protein capsid. tmpzr1t_l9r_go_relaxed.owl virion inner membrane bf 2012-09-07T13:29:48Z cellular_component owl:Class GO:0050637 biolink:NamedThing lovastatin nonaketide synthase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + acetyl-CoA + 18 H(+) + 8 malonyl-CoA + 11 NADPH = S-adenosyl-L-homocysteine + 8 CO(2) + 9 CoA + dihydromonacolin L + 6 H(2)O + 11 NADP(+). tmpzr1t_l9r_go_relaxed.owl acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing, thioester-hydrolysing) KEGG_REACTION:R07251|MetaCyc:2.3.1.161-RXN|RHEA:18565|EC:2.3.1.161 molecular_function owl:Class GO:0102532 biolink:NamedThing genkwanin 6-hydroxylase activity Catalysis of the reaction: genkwanin + O2 + NADPH + H+ <=> scutellarein 7-methyl ether + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14748 molecular_function owl:Class GO:2000713 biolink:NamedThing negative regulation of maintenance of meiotic sister chromatid cohesion, arms Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion along the chromosome arms. tmpzr1t_l9r_go_relaxed.owl negative regulation of maintenance of meiotic sister chromatin cohesion along arms|negative regulation of maintenance of sister chromatin cohesion along arms at meiosis I mah 2011-06-01T12:45:39Z biological_process owl:Class GO:0038018 biolink:NamedThing Wnt receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a Wnt receptor. Internalized Wnt receptors can be recycled to the plasma membrane or sorted to lysosomes for protein degradation. tmpzr1t_l9r_go_relaxed.owl negative regulation of Wnt receptor signaling pathway by Wnt receptor degradation|Wnt receptor breakdown|Frizzled degradation|Wnt receptor catabolism|Wnt receptor degradation bf 2011-06-23T04:38:12Z biological_process owl:Class GO:0021565 biolink:NamedThing accessory nerve development The process whose specific outcome is the progression of the accessory nerve over time, from its formation to the mature structure. In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve. tmpzr1t_l9r_go_relaxed.owl cranial nerve 11 development|spinal accessory nerve development|cranial nerve XI development|CN XI development biological_process owl:Class GO:0070154 biolink:NamedThing mitochondrial lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA in a mitochondrion, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045436 biolink:NamedThing lycopene beta cyclase activity Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. tmpzr1t_l9r_go_relaxed.owl crtL|lycopene cyclase MetaCyc:RXN1F-150|RHEA:32219 molecular_function owl:Class GO:1990902 biolink:NamedThing new cell pole The cell pole proximal to the most recent cell division. tmpzr1t_l9r_go_relaxed.owl pr 2015-11-17T16:44:53Z cellular_component owl:Class GO:0021686 biolink:NamedThing cerebellar granular layer maturation A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar granular layer to attain its fully functional state. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030956 biolink:NamedThing glutamyl-tRNA(Gln) amidotransferase complex A protein complex that possesses glutamyl-tRNA(Gln) amidotransferase activity, and therefore creates Gln-tRNA by amidating Glu-tRNA; usually composed of 3 subunits: A, B, and C. Note that the C subunit may not be required in all organisms. tmpzr1t_l9r_go_relaxed.owl AdT|GatCAB|GatFAB Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity ; GO:0050567'. cellular_component owl:Class GO:0022869 biolink:NamedThing protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + lactose(out) = protein histidine + lactose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl lactose PTS transporter activity molecular_function owl:Class GO:0043560 biolink:NamedThing insulin receptor substrate binding Binding to an insulin receptor substrate (IRS) protein, an adaptor protein that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex. tmpzr1t_l9r_go_relaxed.owl IRS binding|insulin receptor substrate [protein] binding|IRS [protein] binding molecular_function owl:Class GO:0050743 biolink:NamedThing protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine The formation of a protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0352 biological_process owl:Class GO:0120311 biolink:NamedThing ciliary pro-basal body maturation A process that is carried out at the cellular level which results in the conversion of an immature and partially assembled ciliary pro-basal body into a mature basal body that is capable of nucleating a cilium. tmpzr1t_l9r_go_relaxed.owl flagellar pro-basal body maturation|pro-basal body maturation|flagellar probasal body maturation krc 2021-03-26T17:41:59Z biological_process owl:Class GO:1901427 biolink:NamedThing response to propan-1-ol Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a propan-1-ol stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-01T18:55:48Z biological_process owl:Class GO:1903962 biolink:NamedThing arachidonate transmembrane transporter activity Enables the transfer of arachidonate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl arachidonate transporter activity|arachidonic acid transporter activity An example of this is S100A9 in human (P06702) in PMID:15642721 (inferred from direct assay). bhm 2015-02-25T15:51:12Z molecular_function owl:Class GO:0039642 biolink:NamedThing virion nucleoid The region of a virion in which the nucleic acid is confined. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-07T14:14:52Z cellular_component owl:Class GO:0043816 biolink:NamedThing phosphoserine-tRNA(Cys) ligase activity Catalysis of the reaction: tRNA(Cys) + O-phospho-L-serine + ATP = AMP + diphosphate + phosphoseryl-tRNA(Cys). tmpzr1t_l9r_go_relaxed.owl phosphoserine-tRNACys ligase activity|O-phosphoseryl-tRNA(Cys) synthetase activity|phosphoserine--tRNA(Cys) ligase activity|SepRS EC:6.1.1.27|RHEA:25678 molecular_function owl:Class GO:0090663 biolink:NamedThing galanin-activated signaling pathway The series of molecular signals generated as a consequence of the peptide neurotransmitter galanin binding to a cell surface receptor. tmpzr1t_l9r_go_relaxed.owl galanin-activated signalling pathway|galanin signaling pathway|galanin signalling pathway tb 2015-10-21T13:38:04Z biological_process owl:Class GO:0046682 biolink:NamedThing response to cyclodiene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclodiene stimulus. A cyclodiene is any organic insecticide (as dieldrin or chlordane) with a chlorinated methylene group forming a bridge across a 6-membered carbon ring. tmpzr1t_l9r_go_relaxed.owl cyclodiene resistance|cyclodiene susceptibility/resistance biological_process owl:Class GO:0036179 biolink:NamedThing osteoclast maturation A developmental process, independent of morphogenetic (shape) change, that is required for an osteoclast cell to attain its fully functional state. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, and which typically differentiates from monocytes. tmpzr1t_l9r_go_relaxed.owl chondroclast maturation bf 2012-03-29T02:04:00Z biological_process owl:Class GO:0102453 biolink:NamedThing anthocyanidin 3-O-glucoside 6''-O-acyltransferase activity Catalysis of the reaction: 4-coumaryl-CoA + H+ + an anthocyanidin-3-O-beta-D-glucoside = coenzyme A + H+ + an anthocyanidin-3-O-[6-O-(hydroxycinnamoyl)-beta-D-glucoside]. tmpzr1t_l9r_go_relaxed.owl RHEA:35411|EC:2.3.1.215|MetaCyc:RXN-13959 molecular_function owl:Class GO:1990350 biolink:NamedThing glucose transporter complex A protein complex facilitating glucose transport into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl An example of this is GTR1 in human (UniProt symbol P11166) in PMID:15449578 (inferred from direct assay). bhm 2014-03-26T14:12:05Z cellular_component owl:Class GO:0002575 biolink:NamedThing basophil chemotaxis The movement of a basophil in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099540 biolink:NamedThing trans-synaptic signaling by neuropeptide Cell-cell signaling between presynapse and postsynapse mediated by a peptide ligand crossing the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060397 biolink:NamedThing growth hormone receptor signaling pathway via JAK-STAT The process in which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of physiological ligands to the growth hormone receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes. tmpzr1t_l9r_go_relaxed.owl JAK-STAT cascade involved in growth hormone signalling pathway biological_process owl:Class GO:0030604 biolink:NamedThing 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 2-C-methyl-D-erythritol-4-phosphate:NADP+ oxidoreductase (isomerizing)|1-deoxyxylulose-5-phosphate reductoisomerase activity|2C-methyl-D-erythritol-4-phosphate (MEP) synthase activity|1-deoxy-D-xylulose-5-phosphate isomeroreductase activity|DOXP reductoisomerase activity|DXP-reductoisomerase activity MetaCyc:DXPREDISOM-RXN|EC:1.1.1.267|KEGG_REACTION:R05688|RHEA:13717 molecular_function owl:Class GO:0030197 biolink:NamedThing extracellular matrix constituent, lubricant activity Functions as a lubricant for an extracellular matrix, such as a mucous membrane. tmpzr1t_l9r_go_relaxed.owl core matrisome|core extracellular matrix Extracellular matrix mucin proteins may be annotated to this term. PMID:14711375, PMID:18601586 molecular_function owl:Class GO:0001647 biolink:NamedThing G protein-coupled cytokinin receptor activity Combining with cytokinin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G protein coupled cytokinin receptor activity|cytokinin receptor activity, G-protein coupled|G-protein coupled cytokinin receptor activity molecular_function owl:Class GO:0106302 biolink:NamedThing arachidonic acid 8,9-epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-8,9-epoxyeicosatrienoic acid. tmpzr1t_l9r_go_relaxed.owl RHEA:64984 hjd 2020-08-28T19:10:07Z molecular_function owl:Class GO:1904724 biolink:NamedThing tertiary granule lumen Any membrane-enclosed lumen that is part of a tertiary granule. tmpzr1t_l9r_go_relaxed.owl tertiary granule membrane-enclosed lumen|membrane-enclosed lumen of tertiary granule|gelatinase granule membrane-enclosed lumen|membrane-enclosed lumen of gelatinase granule mec 2015-10-12T12:53:10Z cellular_component owl:Class GO:0047296 biolink:NamedThing homospermidine synthase activity Catalysis of the reaction: 2 putrescine = NH3 + sym-homospermidine. tmpzr1t_l9r_go_relaxed.owl putrescine:putrescine 4-aminobutyltransferase (ammonia-forming) MetaCyc:2.5.1.44-RXN|EC:2.5.1.44|RHEA:18645 molecular_function owl:Class GO:1905867 biolink:NamedThing epididymis development The process whose specific outcome is the progression of an epididymis over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl epididymus development sl 2017-01-27T00:00:33Z biological_process owl:Class GO:0002125 biolink:NamedThing maternal aggressive behavior Aggressive behavior of a female to protect her offspring from a threat. tmpzr1t_l9r_go_relaxed.owl maternal aggression Paternal aggression also exists. Serves to protect the offspring from intruders. biological_process owl:Class GO:1900828 biolink:NamedThing D-tyrosine metabolic process The chemical reactions and pathways involving D-tyrosine. tmpzr1t_l9r_go_relaxed.owl D-tyrosine metabolism se 2012-06-06T09:27:00Z biological_process owl:Class GO:0061342 biolink:NamedThing regulation of cell adhesion involved in heart morphogenesis by non-canonical Wnt signaling pathway Any process that decreased the extent of cell adhesion that contributes to the shaping of the heart. tmpzr1t_l9r_go_relaxed.owl regulation of cell adhesion involved in heart morphogenesis by non-canonical Wnt signalling pathway dph 2010-09-29T11:30:15Z biological_process owl:Class GO:0102826 biolink:NamedThing kaempferol-3-glucoside-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + kaempferol 3-O-glucoside <=> kaempferol 3,7-O-diglucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8270 molecular_function owl:Class GO:0106294 biolink:NamedThing NADPH oxidase H202-forming activity Catalysis of the reaction: NADPH + H+ + O2 = NADP + hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl RHEA:11260 hjd 2020-08-19T17:38:36Z molecular_function owl:Class GO:0061786 biolink:NamedThing peptidoglycan stem peptide endopeptidase activity A peptidoglycan endopeptidase activity that acts on a stem peptide of peptidoglycan. tmpzr1t_l9r_go_relaxed.owl dph 2016-09-07T16:47:04Z molecular_function owl:Class GO:0039643 biolink:NamedThing host cell viral nucleoid The region of a host cell that contains the viral genome. tmpzr1t_l9r_go_relaxed.owl To annotate the region of the complete virus particle in which the viral genome is contained, instead use 'virion nucleoid ; GO:0039642'. bf 2012-09-07T15:41:18Z cellular_component owl:Class GO:0016235 biolink:NamedThing aggresome An inclusion body formed by dynein-dependent retrograde transport of an aggregated protein on microtubules. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Aggresome cellular_component owl:Class GO:0062072 biolink:NamedThing H3K9me3 modified histone binding Binding to a histone H3 in which the lysine residue at position 9 has been modified by trimethylation. tmpzr1t_l9r_go_relaxed.owl dph 2018-09-05T12:58:43Z molecular_function owl:Class GO:0071535 biolink:NamedThing RING-like zinc finger domain binding Binding to a RING-like zinc finger domain domain of a protein. The RING-like domain is a zinc finger domain that is related to the C3HC4 RING finger domain. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-08T03:10:14Z molecular_function owl:Class GO:1904021 biolink:NamedThing negative regulation of G protein-coupled receptor internalization Any process that stops, prevents or reduces the frequency, rate or extent of G protein-coupled receptor internalization. tmpzr1t_l9r_go_relaxed.owl inhibition of G-protein coupled receptor internalization|negative regulation of G-protein coupled receptor internalization|down-regulation of G-protein coupled receptor internalization|down regulation of G-protein coupled receptor internalization|downregulation of G-protein coupled receptor internalization pga 2015-03-10T17:10:50Z biological_process owl:Class GO:0140122 biolink:NamedThing regulation of Lewy body formation Any process that modulates the frequency, rate or extent of Lewy body formation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14160 pg 2017-10-25T07:03:29Z biological_process owl:Class GO:1900804 biolink:NamedThing brevianamide F catabolic process The chemical reactions and pathways resulting in the breakdown of brevianamide F. tmpzr1t_l9r_go_relaxed.owl tryptophan-proline diketopiperazine catabolic process|L-prolyl-L-tryptophan anhydride breakdown|cyclo-L-tryptophanyl-L-proline catabolic process|cyclo-(Trp-Pro) degradation|L-tryptophyl-L-proline cyclic anhydride breakdown|cyclo-L-tryptophanyl-L-proline breakdown|brevianamide F catabolism|cyclo-L-Trp-L-Pro catabolism|tryptophan-proline diketopiperazine degradation|cyclo-L-Trp-L-Pro catabolic process|L-tryptophyl-L-proline cyclic anhydride catabolism|L-tryptophyl-L-proline cyclic anhydride catabolic process|cyclo-(Trp-Pro) catabolism|tryptophan-proline diketopiperazine catabolism|tryptophan-proline diketopiperazine breakdown|brevianamide F breakdown|cyclo-(Trp-Pro) catabolic process|L-prolyl-L-tryptophan anhydride catabolism|cyclo-L-Trp-L-Pro degradation|brevianamide F degradation|L-prolyl-L-tryptophan anhydride degradation|cyclo-L-tryptophanyl-L-proline degradation|cyclo-L-tryptophanyl-L-proline catabolism|L-tryptophyl-L-proline cyclic anhydride degradation|L-prolyl-L-tryptophan anhydride catabolic process|cyclo-L-Trp-L-Pro breakdown|cyclo-(Trp-Pro) breakdown di 2012-06-04T09:52:41Z biological_process owl:Class GO:0106080 biolink:NamedThing GATOR1 complex binding Binding to a GATOR1 complex. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-22T14:49:54Z molecular_function owl:Class GO:0140644 biolink:NamedThing neutrophil extracellular trap Extracellular microbicidal structure composed of nuclear chromatin, histones and granular antimicrobial proteins. Histones and several neutrophil granule proteins associated with the DNA framework damage entrapped microorganisms. tmpzr1t_l9r_go_relaxed.owl NET https://github.com/geneontology/go-ontology/issues/21416 pg 2021-05-12T07:03:05Z cellular_component owl:Class GO:0046761 biolink:NamedThing viral budding from plasma membrane A viral budding that starts with formation of a membrane curvature in the host plasma membrane. tmpzr1t_l9r_go_relaxed.owl viral budding from plasma membrane during viral capsid envelopment|virus budding from plasma membrane|plasma membrane viral budding|viral budding from plasma membrane by viral capsid envelopment|plasma membrane viral budding during viral capsid envelopment|virus budding from plasma membrane by viral capsid envelopment|virus budding from plasma membrane during viral capsid envelopment GO:0046766|GO:0046767 biological_process owl:Class GO:0035049 biolink:NamedThing juvenile hormone acid methyltransferase activity Catalysis of the transfer of a methyl group to juvenile hormone acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061917 biolink:NamedThing leading edge of dendritic growth cone That part of the dendritic growth cone which represents the distal part of the structure. tmpzr1t_l9r_go_relaxed.owl dendritic growth cone leading edge|distal tip of dendritic growth cone dph 2017-07-10T19:25:23Z cellular_component owl:Class GO:0071924 biolink:NamedThing chemokine (C-C motif) ligand 22 production The appearance of chemokine (C-C motif) ligand 22 (CCL22) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL-22 production|C-C motif chemokine 22 production|CCL22 production mah 2010-09-28T11:33:13Z biological_process owl:Class GO:0022842 biolink:NamedThing narrow pore channel activity Enables the transport of a solute across a membrane via a narrow pore channel that may be gated or ungated. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047692 biolink:NamedThing ATP deaminase activity Catalysis of the reaction: ATP + H2O = ITP + NH3. tmpzr1t_l9r_go_relaxed.owl ATP aminohydrolase activity|adenosine triphosphate deaminase activity MetaCyc:ATP-DEAMINASE-RXN|RHEA:13037|EC:3.5.4.18 molecular_function owl:Class GO:0010471 biolink:NamedThing GDP-galactose:mannose-1-phosphate guanylyltransferase activity Catalysis of the reaction: GDP-L-galactose + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + alpha-L-galactose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl GDP-L-galactose phosphorylase activity|GDP-L-galactose:mannose-1-phosphate guanylyltransferase activity MetaCyc:RXN4FS-12 molecular_function owl:Class GO:0006370 biolink:NamedThing 7-methylguanosine mRNA capping Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript. tmpzr1t_l9r_go_relaxed.owl 5' mRNA capping|5'-end processing|mRNA capping|5' end capping|5'-end mRNA processing biological_process owl:Class GO:0015528 biolink:NamedThing lactose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: lactose(out) + H+(out) = lactose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl lactose:hydrogen symporter activity|lactose, galactose:hydrogen symporter activity molecular_function owl:Class GO:0018502 biolink:NamedThing 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase activity Catalysis of the reaction: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol + NAD+ = NADH + H+ + 2,5-dichlorohydroquinone. tmpzr1t_l9r_go_relaxed.owl RHEA:15741|UM-BBD_reactionID:r0553|MetaCyc:LINC-RXN molecular_function owl:Class GO:0047377 biolink:NamedThing 5-(3,4-diacetoxybut-1-ynyl)-2,2'-bithiophene deacetylase activity Catalysis of the reaction: 5-(3,4-diacetoxybut-1-ynyl)-2,2'-bithiophene + H(2)O = 5-(3-hydroxy-4-acetoxybut-1-ynyl)-2,2'-bithiophene + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl 5-(3,4-diacetoxybut-1-ynyl)-2,2'-bithiophene acetylhydrolase activity|3,4-diacetoxybutinylbithiophene:4-acetate esterase activity|diacetoxybutynylbithiophene acetate esterase activity EC:3.1.1.66|KEGG_REACTION:R04525|MetaCyc:3.1.1.66-RXN|RHEA:16313 molecular_function owl:Class GO:0008856 biolink:NamedThing exodeoxyribonuclease X activity Catalysis of the endonucleolytic cleavage of supercoiled plasma DNA to linear DNA duplexes. tmpzr1t_l9r_go_relaxed.owl Escherichia coli endodeoxyribonuclease activity|Escherichia coli endodeoxyribonuclease X activity|deoxyribonuclease X activity MetaCyc:3.1.22.5-RXN|EC:3.1.11.- molecular_function owl:Class GO:0000243 biolink:NamedThing commitment complex A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript. tmpzr1t_l9r_go_relaxed.owl mammalian spliceosomal E complex|mammalian spliceosomal complex E|yeast spliceosomal complex CC cellular_component owl:Class GO:0048811 biolink:NamedThing male analia morphogenesis The process in which the anatomical structures of the analia of the male are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052653 biolink:NamedThing 3',5'-cyclic diguanylic acid metabolic process The chemical reactions and pathways involving 3',5'-cyclic diguanylic acid, a cyclic purine dinucleotide in which the base groups are guanine. tmpzr1t_l9r_go_relaxed.owl cyclic diguanylate metabolic process|cdiGMP metabolism|cyclic diguanylate metabolism|cdiGMP metabolic process|3',5'-cyclic diguanylic acid metabolism ai 2010-09-23T11:16:56Z biological_process owl:Class GO:0071114 biolink:NamedThing alphaV-beta3 integrin-tumstatin complex A protein complex that consists of an alphaV-beta3 integrin complex bound to tumstatin, the NC1 domain of the alpha3 chain of type IV collagen. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-COL4A3 complex mah 2009-11-13T02:18:29Z cellular_component owl:Class GO:0018278 biolink:NamedThing N-terminal peptidyl-threonine deamination The deamination of N-terminal peptidyl-threonine to form peptidyl-2-oxobutanoic acid. tmpzr1t_l9r_go_relaxed.owl RESID:AA0129 biological_process owl:Class GO:0047856 biolink:NamedThing dihydrocoumarin hydrolase activity Catalysis of the reaction: 3,4-dihydrocoumarin + H(2)O = 3-(2-hydroxyphenyl)propanoate + H(+). tmpzr1t_l9r_go_relaxed.owl dihydrocoumarin lactonohydrolase activity|dihydrocoumarin lipase activity KEGG_REACTION:R03692|EC:3.1.1.35|RHEA:10360|MetaCyc:DIHYDROCOUMARIN-LIPASE-RXN molecular_function owl:Class GO:0047779 biolink:NamedThing citrate-CoA ligase activity Catalysis of the reaction: ATP + citrate + CoA = (3S)-citryl-CoA + ADP + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl citrate thiokinase activity|citrate:CoA ligase (ADP-forming)|citrate:CoA ligase activity|citryl-CoA synthetase activity MetaCyc:CITRATE--COA-LIGASE-RXN|RHEA:21472|EC:6.2.1.18|KEGG_REACTION:R01322 molecular_function owl:Class GO:0042567 biolink:NamedThing insulin-like growth factor ternary complex A complex of three proteins, which in animals is approximately 150kDa and consists of the insulin-like growth factor (IGF), the insulin-like growth factor binding protein-3 (IGFBP-3), or -5 (IGFBP-5) and an acid-labile subunit (ALS). The complex plays a role in growth and development. tmpzr1t_l9r_go_relaxed.owl IGF ternary complex cellular_component owl:Class GO:0030538 biolink:NamedThing embryonic genitalia morphogenesis The process, occurring in the embryo, by which the anatomical structures of the genitalia are generated and organized. tmpzr1t_l9r_go_relaxed.owl embryonic genital morphogenesis biological_process owl:Class GO:0102867 biolink:NamedThing molybdenum cofactor sulfurtransferase activity Catalysis of the reaction: 2 H+ + MoO2-molybdopterin cofactor(2-) + L-cysteine <=> thio-molybdenum cofactor + L-alanine + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8351|EC:2.8.1.9|RHEA:42636 molecular_function owl:Class GO:0034511 biolink:NamedThing U3 snoRNA binding Binding to a U3 small nucleolar RNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903139 biolink:NamedThing positive regulation of cell wall integrity MAPK cascade Any process that activates or increases the frequency, rate or extent of MAPK cascade involved in cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl up-regulation of Slt2 cascade|up regulation of MAPK cascade involved in cell wall biogenesis|upregulation of PMK1-MAPK signal transduction pathway|upregulation of MAPKKK cascade involved in cell wall biogenesis|up-regulation of cell integrity MAPK pathway|upregulation of Pmk1 MAPK cell integrity signaling|positive regulation of Slt2 cascade|positive regulation of Mpk1 cascade|up regulation of cell integrity MAPK pathway|positive regulation of MAPKKK cascade involved in cell wall biogenesis|activation of cell integrity MAPK pathway|upregulation of cell integrity MAPK pathway|activation of Slt2 cascade|positive regulation of Pmk1 MAPK cell integrity signaling|up regulation of PMK1-MAPK signal transduction pathway|up-regulation of MAPK cascade involved in cell wall organization or biogenesis|up regulation of Mpk1 cascade|up regulation of Slt2 cascade|up regulation of Pmk1 MAPK cell integrity signaling|positive regulation of cell integrity MAPK pathway|upregulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|upregulation of MAPK cascade involved in cell wall biogenesis|activation of MAPK cascade involved in cell wall organization or biogenesis|up-regulation of MAPKKK cascade involved in cell wall biogenesis|upregulation of MAPK cascade involved in cell wall organization or biogenesis|positive regulation of cell wall biogenesis, MAPKKK cascade|up-regulation of cell wall biogenesis, MAPKKK cascade|up-regulation of Pmk1 MAPK cell integrity signaling|activation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|positive regulation of MAPK cascade involved in cell wall organization or biogenesis|activation of MAPKKK cascade involved in cell wall biogenesis|up-regulation of PMK1-MAPK signal transduction pathway|activation of cell wall biogenesis, MAPKKK cascade|activation of Mpk1 cascade|activation of MAPK cascade involved in cell wall biogenesis|upregulation of Slt2 cascade|up-regulation of Mpk1 cascade|up regulation of MAPKKK cascade involved in cell wall biogenesis|activation of Pmk1 MAPK cell integrity signaling|upregulation of Mpk1 cascade|up regulation of MAPK cascade involved in cell wall organization or biogenesis|up-regulation of MAPK cascade involved in cell wall biogenesis|up regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|positive regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|upregulation of cell wall biogenesis, MAPKKK cascade|positive regulation of PMK1-MAPK signal transduction pathway|activation of PMK1-MAPK signal transduction pathway|positive regulation of MAPK cascade involved in cell wall biogenesis|up-regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway|up regulation of cell wall biogenesis, MAPKKK cascade https://github.com/geneontology/go-ontology/issues/20131 mah 2014-07-01T10:22:05Z biological_process owl:Class GO:0005199 biolink:NamedThing structural constituent of cell wall The action of a molecule that contributes to the structural integrity of a cell wall. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102947 biolink:NamedThing (+)-delta-cadinene-8-hydroxylase activity Catalysis of the reaction: H+ + (+)-delta-cadinene + NADPH + O2 <=> 8-hydroxy-(+)-delta-cadinene + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9045 molecular_function owl:Class GO:0120165 biolink:NamedThing perithecium development The process whose specific outcome is the progression of a perithecium over time, from its formation to the mature structure. Peritheicum is a flask-shaped fruiting body of certain molds and ascomycetous fungi having a pore for the escape of spores. In the ascomycetous fungi such as Neurospora crassa and Sordaria macrospora, these perithecia are formed in the sexual phase and they discharge ascospores through the ostiolum at the tip of the perithecial neck. tmpzr1t_l9r_go_relaxed.owl krc 2018-05-17T17:17:44Z biological_process owl:Class GO:0050323 biolink:NamedThing taurine dehydrogenase activity Catalysis of the reaction: A + H(2)O + taurine = AH(2) + NH(4)(+) + sulfoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl taurine:(acceptor) oxidoreductase (deaminating)|taurine:acceptor oxidoreductase (deaminating) EC:1.4.99.2|RHEA:18709|KEGG_REACTION:R07167|MetaCyc:TAURINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0120047 biolink:NamedThing positive regulation of protein localization to medial cortical node Any process that activates or increases the frequency, rate or extent of protein localization to a medial cortical node. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-02T17:30:38Z biological_process owl:Class GO:0008272 biolink:NamedThing sulfate transport The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl sulphate transport GO:0006870 biological_process owl:Class GO:0001193 biolink:NamedThing maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter krc 2011-09-02T02:31:00Z biological_process owl:Class GO:1902518 biolink:NamedThing response to cyclophosphamide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclophosphamide stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2013-12-02T09:34:08Z biological_process owl:Class GO:0103075 biolink:NamedThing indole-3-pyruvate monooxygenase activity Catalysis of the reaction: 3-(indol-3-yl)pyruvate + NADPH + O2 + H+ <=> indole-3-acetate + carbon dioxide + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:34331|MetaCyc:RXNDQC-2|EC:1.14.13.168 molecular_function owl:Class GO:0003866 biolink:NamedThing 3-phosphoshikimate 1-carboxyvinyltransferase activity Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase activity|5-enolpyruvylshikimate-3-phosphate synthase activity|EPSP synthase activity|3-enol-pyruvoylshikimate-5-phosphate synthase activity EC:2.5.1.19|KEGG_REACTION:R03460|MetaCyc:2.5.1.19-RXN|RHEA:21256 molecular_function owl:Class GO:0018661 biolink:NamedThing orcinol 2-monooxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + orcinol = 2,3,5-trihydroxytoluene + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl orcinol,NADH:oxygen oxidoreductase (2-hydroxylating)|orcinol hydroxylase activity MetaCyc:ORCINOL-2-MONOOXYGENASE-RXN|RHEA:19601|EC:1.14.13.6|UM-BBD_reactionID:r0092|KEGG_REACTION:R02830 molecular_function owl:Class GO:0140343 biolink:NamedThing phosphatidylserine transfer activity Removes phosphatidylserine from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. tmpzr1t_l9r_go_relaxed.owl intermembrane phosphatidylserine carrier activity pg 2019-05-16T11:46:19Z molecular_function owl:Class GO:0070313 biolink:NamedThing RGS6-DNMT1-DMAP1 complex A protein complex formed by the association of RGS6, a negative regulator of heterotrimeric G protein signaling, with the DMAP1-Dnmt1 transcriptional repressor complex; in the complex, RGS6 inhibits the transcriptional repressor activity of DMAP1. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905642 biolink:NamedThing negative regulation of DNA methylation Any process that stops, prevents or reduces the frequency, rate or extent of DNA methylation. tmpzr1t_l9r_go_relaxed.owl down regulation of DNA methylation|inhibition of DNA methylation|downregulation of DNA methylation|down-regulation of DNA methylation bc 2016-11-04T16:43:13Z biological_process owl:Class GO:0047538 biolink:NamedThing 2-carboxy-D-arabinitol-1-phosphatase activity Catalysis of the reaction: 2-carboxy-D-arabinitol 1-phosphate + H(2)O = 2-carboxy-D-arabinitol + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-carboxy-D-arabinitol 1-phosphate phosphohydrolase activity|2-carboxy-D-arabinitol-1-phosphate 1-phosphohydrolase activity|2-carboxyarabinitol 1-phosphatase activity RHEA:17837|MetaCyc:2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RXN|EC:3.1.3.63|KEGG_REACTION:R04167 molecular_function owl:Class GO:0021599 biolink:NamedThing abducens nerve formation The process that gives rise to the abducens nerve. This process pertains to the initial formation of a structure from unspecified parts. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye. tmpzr1t_l9r_go_relaxed.owl CN VI formation|CN VI biosynthesis biological_process owl:Class GO:0042468 biolink:NamedThing klinokinesis The movement of a cell or organism in response to a stimulus in which the frequency or magnitude of turning behavior is altered. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990624 biolink:NamedThing guanyl nucleotide exchange factor inhibitor activity Binds to and stops, prevents or reduces the activity of a guanyl nucleotide exchange factor. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-31T15:17:01Z molecular_function owl:Class GO:0046523 biolink:NamedThing S-methyl-5-thioribose-1-phosphate isomerase activity Catalysis of the reaction: S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl S-methyl-5-thio-alpha-D-ribose-1-phosphate aldose-ketose-isomerase activity|1-phospho-5'-S-methylthioribose isomerase activity|methylthioribose 1-phosphate isomerase activity|S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate ketol-isomerase activity|5-methylthioribose-1-phosphate isomerase activity|MTR-1-P isomerase activity|S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase activity|S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate aldose-ketose-isomerase activity|1-PMTR isomerase activity|5-methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase activity MetaCyc:5.3.1.23-RXN|Reactome:R-HSA-1299507|Reactome:R-HSA-1237096|RHEA:19989|KEGG_REACTION:R04420|EC:5.3.1.23 molecular_function owl:Class GO:0072571 biolink:NamedThing mono-ADP-D-ribose binding Binding to monomeric ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment. tmpzr1t_l9r_go_relaxed.owl mono-ADP-ribose binding|mADPr binding mah 2011-01-31T02:39:12Z molecular_function owl:Class GO:0032799 biolink:NamedThing low-density lipoprotein receptor particle metabolic process The chemical reactions and pathways involving low-density lipoprotein receptors. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein receptor metabolic process|low-density lipoprotein receptor metabolism|LDL receptor metabolic process biological_process owl:Class GO:1905633 biolink:NamedThing establishment of protein localization to euchromatin The directed movement of a protein to a specific location in an euchromatin. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation in euchromatin|establishment of protein localization in euchromatin|establishment of protein localisation to euchromatin pga 2016-11-01T16:16:22Z biological_process owl:Class GO:1905632 biolink:NamedThing protein localization to euchromatin A process in which a protein is transported to, or maintained in, a location within an euchromatin. tmpzr1t_l9r_go_relaxed.owl protein localization in euchromatin|protein localisation in euchromatin|protein localisation to euchromatin pga 2016-11-01T16:16:14Z biological_process owl:Class GO:0110113 biolink:NamedThing positive regulation of lipid transporter activity Any process that increases the frequency, rate, or extent of lipid transporter activity. tmpzr1t_l9r_go_relaxed.owl kmv 2018-07-06T19:14:13Z biological_process owl:Class GO:0050568 biolink:NamedThing protein-glutamine glutaminase activity Catalysis of the reaction: protein L-glutamine + H2O = protein L-glutamate + NH3. tmpzr1t_l9r_go_relaxed.owl peptidylglutaminase II|glutaminylpeptide glutaminase activity|destabilase activity|peptidoglutaminase II activity|protein-L-glutamine amidohydrolase activity|glutaminyl-peptide glutaminase activity EC:3.5.1.44|RHEA:16441|MetaCyc:CHEBDEAMID-RXN molecular_function owl:Class GO:0061148 biolink:NamedThing extracellular matrix organization involved in endocardium development A process which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix of the endocardium. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers. tmpzr1t_l9r_go_relaxed.owl extracellular matrix organisation involved in endocardium development dph 2010-06-03T09:18:02Z biological_process owl:Class GO:0033499 biolink:NamedThing galactose catabolic process via UDP-galactose The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose. tmpzr1t_l9r_go_relaxed.owl galactose catabolism via UDP-galactose|galactose breakdown via UDP-galactose|Leloir Pathway|galactose degradation via UDP-galactose MetaCyc:PWY-3821 biological_process owl:Class GO:0005128 biolink:NamedThing erythropoietin receptor binding Binding to an erythropoietin receptor. tmpzr1t_l9r_go_relaxed.owl erythropoietin|erythropoietin receptor ligand molecular_function owl:Class GO:0050264 biolink:NamedThing rifamycin-B oxidase activity Catalysis of the reaction: 2 H(+) + O(2) + rifamycin B = H(2)O(2) + rifamycin O. tmpzr1t_l9r_go_relaxed.owl rifamycin B oxidase activity|rifamycin-B:oxygen oxidoreductase activity|rifamycin-B-oxidase activity KEGG_REACTION:R03736|MetaCyc:RIFAMYCIN-B-OXIDASE-RXN|RHEA:11292|EC:1.10.3.6 molecular_function owl:Class GO:0021739 biolink:NamedThing mesencephalic trigeminal nucleus development The process whose specific outcome is the progression of the mesencephalic trigeminal nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047848 biolink:NamedThing dephospho-[reductase kinase] kinase activity Catalysis of the reaction: ATP + dephospho-[[hydroxymethylglutaryl-CoA reductase (NADPH)] kinase] = ADP + [[hydroxymethylglutaryl-CoA reductase (NADPH)] kinase]. tmpzr1t_l9r_go_relaxed.owl reductase kinase activity|AMP-activated protein kinase kinase activity|hydroxymethylglutaryl coenzyme A reductase kinase kinase activity|dephospho-reductase kinase kinase activity|hydroxymethylglutaryl coenzyme A reductase kinase kinase (phosphorylating) activity|AMP-activated kinase activity|STK30|ATP:dephospho-{hydroxymethylglutaryl-CoA reductase (NADPH)kinase} phosphotransferase activity|reductase kinase kinase activity EC:2.7.11.3|MetaCyc:DEPHOSPHO-REDUCTASE-KINASE-KINASE-RXN molecular_function owl:Class GO:0052924 biolink:NamedThing all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity Catalysis of the reaction: geranylgeranyl diphosphate + 5 isopentenyl diphosphate = 5 diphosphate + all-trans-nonaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl nonaprenyl diphosphate synthase activity|solanesyl diphosphate synthetase activity|solanesyl diphosphate synthase activity KEGG_REACTION:R09251|RHEA:27594|MetaCyc:RXN-11486|EC:2.5.1.85 molecular_function owl:Class GO:0004794 biolink:NamedThing L-threonine ammonia-lyase activity Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3. tmpzr1t_l9r_go_relaxed.owl threonine dehydrase activity|L-threonine hydro-lyase (deaminating) activity|L-threonine deaminase activity|L-threonine dehydratase activity|threonine dehydratase activity|threonine deaminase activity|serine deaminase activity|threonine ammonia-lyase activity|L-threonine ammonia-lyase (2-oxobutanoate-forming)|L-serine dehydratase activity UM-BBD_reactionID:r0433|EC:4.3.1.19|RHEA:22108|MetaCyc:THREDEHYD-RXN Note that this function was formerly EC:4.2.1.16. molecular_function owl:Class GO:0030796 biolink:NamedThing cycloartenol 24-C-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + cycloartenol = (24R)-24-methylcycloart-25-en-3beta-ol + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:cycloartenol 24-C-methyltransferase activity|sterol C-methyltransferase activity EC:2.1.1.142|RHEA:13137|MetaCyc:2.1.1.142-RXN|KEGG_REACTION:R05760 molecular_function owl:Class GO:0051909 biolink:NamedThing acetylenecarboxylate hydratase activity, producing 3-hydroxypropenoate Catalysis of the reaction: 3-hydroxypropenoate = propynoate + H2O. tmpzr1t_l9r_go_relaxed.owl acetylenecarboxylate hydratase activity|acetylenemonocarboxylate hydratase activity|3-hydroxypropenoate dehydratase activity|alkynoate hydratase activity EC:4.2.1.27 molecular_function owl:Class GO:0086076 biolink:NamedThing gap junction channel activity involved in atrial cardiac muscle cell-AV node cell electrical coupling A wide pore channel activity that enables a direct cytoplasmic connection from an atrial cardiomyocyte to an AV node cell. The gap junction passes electrical signals between the cells contributing to cardiac conduction. tmpzr1t_l9r_go_relaxed.owl gap junction channel activity involved in atrial cardiomyocyte-atrioventricular node cell electrical coupling|gap junction channel activity involved in atrial cardiomyocyte-AV node cell electrical coupling dph 2011-11-22T10:26:27Z molecular_function owl:Class GO:0019680 biolink:NamedThing L-methylmalonyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of L-methylmalonyl-CoA, the L-enantiomer of 2-carboxypropanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl L-methylmalonyl-CoA formation|L-methylmalonyl-CoA anabolism|L-methylmalonyl-CoA biosynthesis|L-methylmalonyl-CoA synthesis MetaCyc:PWY0-43 biological_process owl:Class GO:0062102 biolink:NamedThing female germline stem cell symmetric division Division of a female germline stem cell to produce two germline stem cells of the same type as the parent. tmpzr1t_l9r_go_relaxed.owl dph 2018-12-18T14:17:54Z biological_process owl:Class GO:1905233 biolink:NamedThing response to codeine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a codeine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2016-06-07T21:26:45Z biological_process owl:Class GO:0007524 biolink:NamedThing adult visceral muscle development The process whose specific outcome is the progression of the adult visceral muscle over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033414 biolink:NamedThing UGC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UGC codon. tmpzr1t_l9r_go_relaxed.owl cysteine tRNA|TGC codon-amino acid adaptor activity Note that in the standard genetic code, TGC codes for cysteine. molecular_function owl:Class GO:0120073 biolink:NamedThing negative regulation of pyloric antrum smooth muscle contraction Any process that decreases the frequency, rate or extent of any pyloric antrum smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T23:33:11Z biological_process owl:Class GO:0005041 biolink:NamedThing low-density lipoprotein particle receptor activity Combining with a low-density lipoprotein particle and delivering the low-density lipoprotein particle into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein receptor activity|LDLR activity|LDL receptor Wikipedia:LDL_receptor|Reactome:R-HSA-2404131|Reactome:R-HSA-2424254 GO:0008032 molecular_function owl:Class GO:0034206 biolink:NamedThing enhanceosome A protein-DNA complex formed by the association of a distinct set of general and specific transcription factors with a region of enhancer DNA. The cooperative assembly of an enhanceosome confers specificity of transcriptional regulation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Enhanceosome cellular_component owl:Class GO:0032793 biolink:NamedThing positive regulation of CREB transcription factor activity Any process that activates or increases the frequency, rate or extent of activity of the transcription factor CREB. tmpzr1t_l9r_go_relaxed.owl activation of CREB transcription factor|activation of CREB|CREB activator biological_process owl:Class GO:0080113 biolink:NamedThing regulation of seed growth Any process that modulates the frequency, rate or extent of growth of the seed of an plant. tmpzr1t_l9r_go_relaxed.owl regulation of seed size dhl 2009-04-27T02:55:01Z biological_process owl:Class GO:0008113 biolink:NamedThing peptide-methionine (S)-S-oxide reductase activity Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. tmpzr1t_l9r_go_relaxed.owl methionine S-oxide reductase activity|peptide methionine sulfoxide reductase activity|methionine sulfoxide reductase A activity|methionine sulfoxide (protein) reductase activity|peptide-L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine (S)-S-oxide-forming] activity|peptide-methionine-(S)-S-oxide reductase activity|MsrA|methionine sulphoxide reductase A activity|methionine sulfoxide reductase activity|protein-methionine-S-oxide reductase activity|methionine S-oxide reductase (S-form oxidizing) activity|peptide Met(O) reductase activity EC:1.8.4.11|Reactome:R-HSA-1222363|RHEA:14217|MetaCyc:RXN-8669|Reactome:R-HSA-5676940|MetaCyc:RXN-8668 GO:0072561|GO:0033742 molecular_function owl:Class GO:0015191 biolink:NamedThing L-methionine transmembrane transporter activity Enables the transfer of L-methionine from one side of a membrane to the other. L-methionine is 2-amino-4-(methylthio)butanoic acid. tmpzr1t_l9r_go_relaxed.owl L-methionine transporter activity molecular_function owl:Class GO:0021972 biolink:NamedThing corticospinal neuron axon guidance through spinal cord The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after decussation through the spinal cord in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl corticospinal neuron axon pathfinding through spinal cord biological_process owl:Class GO:0030963 biolink:NamedThing peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine The dihydroxylation of peptidyl-lysine to peptidyl-4,5-dihydroxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0370 biological_process owl:Class GO:0000053 biolink:NamedThing argininosuccinate metabolic process The chemical reactions and pathways involving argininosuccinate, 2-(N(omega)-arginino)succinate, an intermediate in the ornithine-urea cycle, where it is synthesized from citrulline and aspartate. tmpzr1t_l9r_go_relaxed.owl argininosuccinate metabolism biological_process owl:Class GO:0033486 biolink:NamedThing delphinidin 3-O-glucoside biosynthetic process The chemical reactions and pathways resulting in the formation of delphinidin 3-O-glucoside, a basic, water-soluble anthocyanin responsible for blue coloration of flowers and fruits. tmpzr1t_l9r_go_relaxed.owl delphinidin 3-O-glucoside anabolism|delphinidin 3-O-glucoside synthesis|delphinidin 3-O-glucoside formation|delphinidin 3-O-glucoside biosynthesis MetaCyc:PWY-5153 biological_process owl:Class GO:0043912 biolink:NamedThing D-lysine oxidase activity Catalysis of the reaction: D-lysine + O2 + H2O = 6-amino-2-oxohexanoate + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl EC:1.4.3.- molecular_function owl:Class GO:0034906 biolink:NamedThing N-isopropylaniline 1,2-dixoxygenase activity Catalysis of the reaction: N-isopropylaniline + O2 + 2 H+ + NADH = catechol + NAD+ + isopropylamine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0721|EC:1.14.12.- molecular_function owl:Class GO:0047065 biolink:NamedThing sulochrin oxidase [(-)-bisdechlorogeodin-forming] activity Catalysis of the reaction: O(2) + 2 sulochrin = 2 (2R)-bisdechlorogeodin + 2 H(2)O. tmpzr1t_l9r_go_relaxed.owl sulochrin oxidase activity|sulochrin:oxygen oxidoreductase (cyclizing, (-)-specific) MetaCyc:1.10.3.8-RXN|RHEA:22616|KEGG_REACTION:R00061|EC:1.21.3.5 molecular_function owl:Class GO:0010773 biolink:NamedThing meiotic DNA recombinase assembly involved in meiotic gene conversion The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process in which genetic information is transferred from one helix to another. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051923 biolink:NamedThing sulfation The addition of a sulfate group to a molecule. tmpzr1t_l9r_go_relaxed.owl sulfonation|phase II metabolism|sulphation|sulfur addition|sulphur addition biological_process owl:Class GO:0070080 biolink:NamedThing titin Z domain binding Binding to a titin Z protein domain, which recognizes and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34. tmpzr1t_l9r_go_relaxed.owl Z repeat domain binding molecular_function owl:Class GO:2000253 biolink:NamedThing positive regulation of feeding behavior Any process that activates or increases the frequency, rate or extent of feeding behavior. tmpzr1t_l9r_go_relaxed.owl positive regulation of drinking|positive regulation of feeding behaviour|positive regulation of behavioral response to food|positive regulation of behavioural response to food|positive regulation of eating yaf 2010-11-18T11:24:18Z biological_process owl:Class GO:0030369 biolink:NamedThing ICAM-3 receptor activity Combining with ICAM-3, intercellular adhesion molecule 3, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. ICAM-3, or CD50, are constitutively expressed on monocytes, granulocytes and lymphocytes; on physiological stimulation, they become transiently phosphorylated on serine residues. tmpzr1t_l9r_go_relaxed.owl Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'cell adhesion molecule binding ; GO:0050839' and 'receptor binding ; GO:0005102' and the biological process term 'cell adhesion ; GO:0007155'. molecular_function owl:Class GO:0102793 biolink:NamedThing soyasapogenol B glucuronosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucuronate + soyasapogenol B <=> H+ + UDP + soyasapogenol B 3-O-beta-glucuronate. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.262|MetaCyc:RXN-8086|RHEA:31475 molecular_function owl:Class GO:0009655 biolink:NamedThing PSII associated light-harvesting complex II, core complex The pigment-protein complex primarily associated to PSII in higher plants, green algae and cyanobacteria that directly transfers electrons to the reaction center. tmpzr1t_l9r_go_relaxed.owl PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex|PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex|PSII associated light-harvesting complex II, core complex, LHCIId subcomplex cellular_component owl:Class GO:0102238 biolink:NamedThing geraniol kinase activity (ATP-dependent) activity Catalysis of the reaction: geraniol + ATP = geranyl monophosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12307 molecular_function owl:Class GO:0047094 biolink:NamedThing 3-hydroxyphenylacetate 6-hydroxylase activity Catalysis of the reaction: O2 + NAD(P)H + 3-hydroxyphenylacetate = H2O + NAD(P)+ + homogentisate. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenylacetate,NAD(P)H:oxygen oxidoreductase (6-hydroxylating)|3-hydroxyphenylacetate 6-monooxygenase activity MetaCyc:1.14.13.63-RXN|EC:1.14.13.63 molecular_function owl:Class GO:0070273 biolink:NamedThing phosphatidylinositol-4-phosphate binding Binding to phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097353 biolink:NamedThing centrolateral pattern formation The regionalization process in which the areas along the centrolateral axis are established that will lead to differences in cell differentiation, or in which cells interpret a specific environment. tmpzr1t_l9r_go_relaxed.owl mediolateral pattern formation pr 2012-07-02T11:34:08Z biological_process owl:Class GO:1905275 biolink:NamedThing Rohon-Beard neuron differentiation The process in which a relatively unspecialized cell acquires the specialized features of a Rohon-Beard neuron. tmpzr1t_l9r_go_relaxed.owl cjm 2016-06-16T23:17:04Z biological_process owl:Class GO:0035044 biolink:NamedThing sperm aster formation Formation and organization of an aster composed of microtubule arrays originating from the sperm basal body and extending virtually to the egg periphery. The sperm aster ensures the appropriate positioning of the male and female pronuclei. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902672 biolink:NamedThing right anterior basal body Any ciliary basal body that is part of a right anterior flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl cilial basal body of right anterior cilium|ciliary basal body of right anterior flagellum|cilium basal body of right anterior flagellum|microtubule basal body of right anterior flagellum|right anterior flagellum ciliary basal body|cilial basal body of right anterior flagellum|ciliary basal body of right anterior cilium|cilium basal body of right anterior cilium|microtubule basal body of right anterior cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:46:26Z cellular_component owl:Class GO:0047945 biolink:NamedThing L-glutamine:pyruvate aminotransferase activity Catalysis of the reaction: L-glutamine + pyruvate = 2-oxoglutaramate + L-alanine. tmpzr1t_l9r_go_relaxed.owl glutamine-keto acid aminotransferase activity|glutamine--pyruvate aminotransferase activity|glutamine-alpha-keto acid transaminase activity|glutamine-pyruvate transaminase activity|glutamine-oxo acid aminotransferase activity|L-glutamine transaminase L|gamma-glutaminyltransferase activity|glutamine--oxo-acid transaminase activity|glutaminase II activity|glutamine transaminase activity|glutamine-alpha-keto acid transamidase activity|glutamine transaminase L activity KEGG_REACTION:R00576|RHEA:10400|MetaCyc:GLUTAMINE--PYRUVATE-AMINOTRANSFERASE-RXN|Reactome:R-HSA-893616|EC:2.6.1.15 molecular_function owl:Class GO:0047185 biolink:NamedThing N-acetylneuraminate 4-O-acetyltransferase activity Catalysis of the reaction: N-acetylneuraminate + acetyl-CoA = N-acetyl-4-O-acetylneuraminate + CoA. tmpzr1t_l9r_go_relaxed.owl sialate O-acetyltransferase|acetyl-CoA:N-acetylneuraminate 4-O-acetyltransferase activity EC:2.3.1.44|KEGG_REACTION:R01806|RHEA:18305|MetaCyc:2.3.1.44-RXN molecular_function owl:Class GO:1902790 biolink:NamedThing undecan-2-one metabolic process The chemical reactions and pathways involving undecan-2-one. tmpzr1t_l9r_go_relaxed.owl undecan-2-one metabolism tt 2014-03-22T02:13:01Z biological_process owl:Class GO:0046254 biolink:NamedThing anaerobic toluene catabolic process The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic toluene catabolism|anaerobic toluene degradation|anaerobic toluene breakdown MetaCyc:PWY-81 biological_process owl:Class GO:0098684 biolink:NamedThing photoreceptor ribbon synapse A ribbon synapse between a retinal photoreceptor cell (rod or cone) and a retinal bipolar cell. These contain a plate-like synaptic ribbon. tmpzr1t_l9r_go_relaxed.owl dos 2017-02-05T16:26:27Z cellular_component owl:Class GO:0018460 biolink:NamedThing cyclohexanol dehydrogenase activity Catalysis of the reaction: cyclohexanol + NAD+ = cyclohexanone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl cyclohexanol:NAD+ oxidoreductase activity EC:1.1.1.245|UM-BBD_reactionID:r0165|RHEA:10044|MetaCyc:CYCLOHEXANOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0004316 biolink:NamedThing 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl beta-ketoacyl-acyl-carrier protein(ACP) reductase activity|beta-ketoacyl thioester reductase activity|beta-ketoacyl acyl carrier protein (ACP) reductase activity|beta-ketoacyl-acyl carrier protein reductase activity|3-oxoacyl-acyl-carrier-protein reductase activity|3-oxoacyl-[acyl-carrier protein] reductase activity|3-ketoacyl acyl carrier protein reductase activity|NADPH-specific 3-oxoacyl-acylcarrier proteinreductase activity|3-oxoacyl-ACP reductase activity|beta-ketoacyl-ACP reductase activity|beta-ketoacyl reductase activity|3-oxoacyl-ACPreductase activity|(3R)-3-hydroxyacyl-acyl-carrier-protein:NADP+ oxidoreductase activity https://github.com/geneontology/go-ontology/issues/21876 RHEA:17397|EC:1.1.1.100|Reactome:R-HSA-8862152|MetaCyc:3-OXOACYL-ACP-REDUCT-RXN molecular_function owl:Class GO:0046163 biolink:NamedThing heme C catabolic process The chemical reactions and pathways resulting in the breakdown of heme C, a derivative of heme found in cytochromes c, b4, and f. tmpzr1t_l9r_go_relaxed.owl haem C catabolism|heme C breakdown|heme C catabolism|heme C degradation|haem C catabolic process biological_process owl:Class GO:0002301 biolink:NamedThing CD4-positive, alpha-beta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD4-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl CD4-positive, alpha-beta intraepithelial T-lymphocyte differentiation|CD4-positive, alpha-beta intraepithelial T cell development|CD4-positive, alpha-beta intraepithelial T lymphocyte differentiation|CD4-positive, alpha-beta intraepithelial T-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0047491 biolink:NamedThing poly(alpha-L-guluronate) lyase activity Catalysis of the reaction: polysaccharides containing a terminal alpha-L-guluronate group = oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enuronosyl end. This reaction is the eliminative cleavage of polysaccharides containing a terminal a-L-guluronate group, to give oligopolysaccharides with 4-deoxy-a-L-erythro-hex-4-enuronosyl groups at their nonreducing ends. tmpzr1t_l9r_go_relaxed.owl poly-alpha-L-guluronate lyase activity|polyguluronate-specific alginate lyase activity|L-guluronan lyase activity|alginase II activity|guluronate lyase activity|poly(alpha-L-1,4-guluronide) exo-lyase activity|L-guluronate lyase activity MetaCyc:4.2.2.11-RXN|EC:4.2.2.11 molecular_function owl:Class GO:1904612 biolink:NamedThing response to 2,3,7,8-tetrachlorodibenzodioxine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 2,3,7,8-tetrachlorodibenzodioxine stimulus. tmpzr1t_l9r_go_relaxed.owl response to dioxin|response to TCDD sl 2015-08-27T19:01:52Z biological_process owl:Class GO:0002149 biolink:NamedThing hypochlorous acid biosynthetic process The chemical reactions and pathways resulting in the formation of hypochlorous acid. tmpzr1t_l9r_go_relaxed.owl HOCl biosynthetic process|HClO biosynthetic process|hypochlorite biosynthetic process|hypochlorous acid biosynthesis Note that this reaction is catalyzed by myeloperoxidase in neutrophils. hjd 2009-10-13T10:32:35Z biological_process owl:Class GO:0006564 biolink:NamedThing L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl L-serine formation|L-serine biosynthesis|L-serine anabolism|L-serine synthesis MetaCyc:SERSYN-PWY biological_process owl:Class GO:1904097 biolink:NamedThing acid phosphatase complex A protein complex which is capable of acid phosphatase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is ACPP in human (UniProt symbol P15309) in PMID:22389722 (inferred from physical interaction). bhm 2015-03-27T14:36:36Z cellular_component owl:Class GO:0050296 biolink:NamedThing stipitatonate decarboxylase activity Catalysis of the reaction: H(2)O + stipitatonate = CO(2) + H(+) + stipitatate. tmpzr1t_l9r_go_relaxed.owl stipitatonate carboxy-lyase (decyclizing, stipitatate-forming)|stipitatonate carboxy-lyase (decyclizing) KEGG_REACTION:R03739|MetaCyc:STIPITATONATE-DECARBOXYLASE-RXN|EC:4.1.1.60|RHEA:13885 molecular_function owl:Class GO:0009234 biolink:NamedThing menaquinone biosynthetic process The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2. tmpzr1t_l9r_go_relaxed.owl vitamin K2 biosynthesis|menaquinone anabolism|vitamin K2 biosynthetic process|multiprenylmenaquinone biosynthesis|menatetrenone biosynthetic process|menaquinone formation|menatetrenone biosynthesis|menaquinone biosynthesis|menaquinone synthesis|multiprenylmenaquinone biosynthetic process MetaCyc:MENAQUINONESYN-PWY biological_process owl:Class GO:0090582 biolink:NamedThing protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + D-fructose(out) = protein cysteine + D-fructose-1-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0047540 biolink:NamedThing 2-enoate reductase activity Catalysis of the reaction: butanoate + NAD+ = 2-butenoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl enoate reductase activity|butanoate:NAD+ delta2-oxidoreductase activity EC:1.3.1.31|MetaCyc:2-ENOATE-REDUCTASE-RXN|RHEA:10200 molecular_function owl:Class GO:0012507 biolink:NamedThing ER to Golgi transport vesicle membrane The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-Golgi transport vesicle membrane|ER to Golgi constitutive secretory pathway transport vesicle membrane|endoplasmic reticulum to Golgi transport vesicle membrane|COPII coated vesicle membrane|ER-Golgi transport vesicle membrane GO:0030664 cellular_component owl:Class GO:0031964 biolink:NamedThing beta-alanyl-histamine hydrolase activity Catalysis of the reaction: N-beta-alanyl histamine + H2O = histamine + beta-alanine. tmpzr1t_l9r_go_relaxed.owl carcinine hydrolase activity molecular_function owl:Class GO:0004768 biolink:NamedThing stearoyl-CoA 9-desaturase activity Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl delta9-desaturase|delta(9)-desaturase activity|fatty acid desaturase|stearoyl-CoA desaturase activity|acyl-CoA desaturase EC:1.14.19.1|MetaCyc:1.14.19.1-RXN|RHEA:19721|Reactome:R-HSA-5690565|Reactome:R-HSA-8847579 Note that this function was formerly EC:1.14.99.5. GO:0016214|GO:0043735 molecular_function owl:Class GO:1904768 biolink:NamedThing all-trans-retinol binding Binding to all-trans-retinol. tmpzr1t_l9r_go_relaxed.owl kmv 2015-10-27T21:14:47Z molecular_function owl:Class GO:0030769 biolink:NamedThing macrocin O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + macrocin = S-adenosyl-L-homocysteine + H(+) + tylosin. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:macrocin 3'''-O-methyltransferase activity|macrocin methyltransferase activity|S-adenosyl-L-methionine-macrocin O-methyltransferase activity KEGG_REACTION:R02858|EC:2.1.1.101|MetaCyc:MACROCIN-O-METHYLTRANSFERASE-RXN|RHEA:17269 molecular_function owl:Class GO:0106239 biolink:NamedThing 9,13-epoxylabda-14-ene synthase activity Catalysis of the reaction:peregrinol diphosphate = (13R)-9,13-epoxylabd-14-ene + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:54512|EC:4.2.3.189 hjd 2019-12-19T16:00:49Z molecular_function owl:Class GO:0050080 biolink:NamedThing malonyl-CoA decarboxylase activity Catalysis of the reaction: malonyl-CoA = acetyl-CoA + CO2. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA carboxy-lyase activity|malonyl-CoA carboxy-lyase (acetyl-CoA-forming)|malonyl coenzyme A decarboxylase activity RHEA:18781|MetaCyc:MALONYL-COA-DECARBOXYLASE-RXN|Reactome:R-HSA-977317|EC:4.1.1.9 molecular_function owl:Class GO:0018703 biolink:NamedThing 2,4-dichlorophenoxyacetate dehalogenase activity Catalysis of the reaction: 2,4-dichlorophenoxyacetic acid + H+ + 2 e- = Cl- + 4-chlorophenoxyacetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0280 molecular_function owl:Class GO:0044299 biolink:NamedThing C-fiber The axon of a dorsal root ganglion cell that are responsive to pain and temperature. C-fibers are small in diameter (0.2-1.5 um) and unmyelinated. tmpzr1t_l9r_go_relaxed.owl C-fibre NIF_Subcellular:nlx_subcell_20090210 jl 2010-02-05T11:14:51Z cellular_component owl:Class GO:0018581 biolink:NamedThing hydroxyquinol 1,2-dioxygenase activity Catalysis of the reaction: benzene-1,2,4-triol + O2 = 3-hydroxy-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl hydroxyquinol dioxygenase activity|benzene-1,2,4-triol:oxygen 1,2-oxidoreductase (decyclizing) UM-BBD_reactionID:r0232|EC:1.13.11.37|RHEA:19441|MetaCyc:HYDROXYQUINOL-12-DIOXYGENASE-RXN molecular_function owl:Class GO:0050006 biolink:NamedThing isomaltulose synthase activity Catalysis of the reaction: sucrose = 6-O-alpha-D-glucopyranosyl-D-fructofuranose. tmpzr1t_l9r_go_relaxed.owl trehalulose synthase activity|sucrose glucosylmutase activity|isomaltulose synthetase activity|sucrose alpha-glucosyltransferase activity RHEA:24032|EC:5.4.99.11|MetaCyc:ISOMALTULOSE-SYNTHASE-RXN molecular_function owl:Class GO:0061527 biolink:NamedThing dopamine secretion, neurotransmission The regulated release of dopamine by a cell in which the dopamine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dph 2013-06-21T15:43:15Z biological_process owl:Class GO:0022831 biolink:NamedThing narrow pore, gated channel activity Enables the transport of a solute across a membrane via a narrow pore channel that opens in response to a particular stimulus. tmpzr1t_l9r_go_relaxed.owl ion channels Wikipedia:Ion_channels molecular_function owl:Class GO:0106273 biolink:NamedThing cytosol to ERGIC protein transport The directed movement of proteins from the cystosol to the endoplasmic reticulum-Golgi intermediate compartment (ERGIC). tmpzr1t_l9r_go_relaxed.owl hjd 2020-07-01T17:28:07Z biological_process owl:Class GO:0000111 biolink:NamedThing nucleotide-excision repair factor 2 complex One of several protein complexes involved in nucleotide-excision repair; possesses damaged DNA binding activity. In S. cerevisiae, it is composed of Rad4p and Rad23p. tmpzr1t_l9r_go_relaxed.owl NEF2 complex Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0008456 biolink:NamedThing alpha-N-acetylgalactosaminidase activity Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D-galactosaminides. tmpzr1t_l9r_go_relaxed.owl alpha-NAGA activity|alpha-N-acetyl-D-galactosaminide N-acetylgalactosaminohydrolase activity|N-acetyl-alpha-galactosaminidase activity|alpha-acetylgalactosaminidase activity|N-acetyl-alpha-D-galactosaminidase activity|alpha-galactosidase B activity EC:3.2.1.49|MetaCyc:3.2.1.49-RXN|RHEA:15085 molecular_function owl:Class GO:0102627 biolink:NamedThing parthenolide 3beta-hydroxylase activity Catalysis of the reaction: parthenolide + NADPH + O2 + H+ <=> 3beta-hydroxyparthenolide + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15532 molecular_function owl:Class GO:0070412 biolink:NamedThing R-SMAD binding Binding to a receptor-regulated SMAD signaling protein. tmpzr1t_l9r_go_relaxed.owl pathway-restricted SMAD binding|receptor-regulated SMAD binding|pathway restricted SMAD binding|receptor regulated SMAD binding molecular_function owl:Class GO:0071315 biolink:NamedThing cellular response to morphine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:53:46Z biological_process owl:Class GO:0044101 biolink:NamedThing (R)-citramalyl-CoA lyase activity Catalysis of the reaction: (R)-citramalyl-CoA = pyruvate + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl R-citramalyl-CoA lyase activity|Ccl EC:4.1.3.46|MetaCyc:RXN-8967 jl 2009-07-09T03:14:15Z molecular_function owl:Class GO:0048537 biolink:NamedThing mucosa-associated lymphoid tissue development The process whose specific outcome is the progression of mucosal-associated lymphoid tissue over time, from its formation to the mature structure. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes. tmpzr1t_l9r_go_relaxed.owl GALT development|NALT development|BALT development|nasopharyngeal-associated lymphoid tissue development|gut-associated lymphoid tissue development|mucosal-associated lymphoid tissue development|bronchial-associated lymphoid tissue development https://github.com/geneontology/go-ontology/issues/19918 biological_process owl:Class GO:0071874 biolink:NamedThing cellular response to norepinephrine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a norepinephrine stimulus. Norepinephrine is a catecholamine that has the formula C8H11NO3; it acts as a hormone, and as a neurotransmitter in most of the sympathetic nervous system. tmpzr1t_l9r_go_relaxed.owl cellular response to noradrenaline stimulus Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. mah 2010-09-13T03:33:32Z biological_process owl:Class GO:0008935 biolink:NamedThing 1,4-dihydroxy-2-naphthoyl-CoA synthase activity Catalysis of the reaction: 2-succinylbenzoyl-CoA + H+ = 1,4-dihydroxy-2-naphthoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl dihydroxynaphthoic acid synthetase activity|O-succinylbenzoyl-CoA 1,4-dihydroxy-2-naphthoate-lyase (cyclizing) activity|dihydroxynaphthoate synthase activity|DHNA synthetase activity|naphthoate synthase activity https://github.com/geneontology/go-ontology/issues/21763 RHEA:26562|KEGG_REACTION:R04150|EC:4.1.3.36|MetaCyc:NAPHTHOATE-SYN-RXN molecular_function owl:Class GO:0036038 biolink:NamedThing MKS complex A protein complex that is located at the ciliary transition zone and consists of several proteins some of which are membrane bound. Acts as an organiser of transition zone inner structure, specifically the Y-shaped links, in conjunction with the NPHP complex. The MKS complex also acts as part of the selective barrier that prevents diffusion of proteins between the ciliary cytoplasm and cellular cytoplasm as well as between the ciliary membrane and plasma membrane. tmpzr1t_l9r_go_relaxed.owl tectonic complex|tectonic-like complex|MKS module|TCTN-B9D complex|B9 complex Although there is some evidence, it is still unclear if the MKS and NPHP complexes are constituents parts of the Y-shaped links or are simply responsible for aligning and attaching the Y-shaped links to the membrane and axoneme. bf 2011-11-22T11:21:28Z cellular_component owl:Class GO:0033891 biolink:NamedThing CC-preferring endodeoxyribonuclease activity Catalysis of the endonucleolytic cleavage to give 5'-phosphooligonucleotide end-products, with a preference for cleavage within the sequence CC. tmpzr1t_l9r_go_relaxed.owl Streptomyces glaucescens exocytoplasmic dodeoxyribonuclease activity|Streptomyces glaucescens exocytoplasmic endonuclease activity|Streptomyces glaucescens exocytoplasmic endodeoxyribonuclease activity|5'-CC-3'-preferring endodeoxyribonuclease activity EC:3.1.21.6|MetaCyc:3.1.21.6-RXN molecular_function owl:Class GO:0102832 biolink:NamedThing verbascose galactinol:ajugose galactosyltransferase activity Catalysis of the reaction: verbascose + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> ajugose + myo-inositol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8288 molecular_function owl:Class GO:1902860 biolink:NamedThing propionyl-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of propionyl-CoA. tmpzr1t_l9r_go_relaxed.owl propionyl-CoA formation|propionyl-CoA anabolism|propionyl-CoA synthesis|propionyl-CoA biosynthesis tt 2014-04-03T03:10:29Z biological_process owl:Class GO:0051719 biolink:NamedThing DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpN = S-adenosyl-L-homocysteine + DNA containing 5-MeCpN. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5334097|Reactome:R-HSA-5334152 molecular_function owl:Class GO:0031173 biolink:NamedThing otolith mineralization completed early in development The formation of otoliths during embryogenesis with completion in early postembryonic development. Formation occurs by precipitation of specific crystal forms of calcium carbonate around an organic core of extracellular matrix proteins. Otoconia (otoliths) are small (~10 micron) dense extracellular particles present in the otolith end organs of the vertebrate inner ear. tmpzr1t_l9r_go_relaxed.owl otoconium mineralization|otoconia mineralization biological_process owl:Class GO:0048036 biolink:NamedThing central complex development The process whose specific outcome is the progression of the central complex over time, from its formation to the mature structure. The central complex region of the insect brain is thought to be crucial for control of locomotive behavior. Located in the middle of the two protocerebral hemispheres, it comprises four neuropilar regions, the fan-shaped body, the ellipsoid body, the protocerebral bridge and the paired noduli. tmpzr1t_l9r_go_relaxed.owl central body development biological_process owl:Class GO:0033391 biolink:NamedThing chromatoid body A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102604 biolink:NamedThing naringenin,NADPH:oxygen oxidoreductase activity Catalysis of the reaction: (S)-naringenin(1-) + O2 + NADPH + H+ <=> 2-hydroxy-2,3-dihydrogenistein-7-olate + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1541|RHEA:35487|EC:1.14.14.87 molecular_function owl:Class GO:0021608 biolink:NamedThing accessory nerve formation The process that gives rise to the accessory nerve. This process pertains to the initial formation of a structure from unspecified parts. The spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve. tmpzr1t_l9r_go_relaxed.owl CN XI biosynthesis|CN XI formation biological_process owl:Class GO:0015680 biolink:NamedThing protein maturation by copper ion transfer A process that contributes to the delivery of copper ions to a target protein. tmpzr1t_l9r_go_relaxed.owl intracellular copper ion delivery|intracellular copper ion transport|intracellular copper delivery biological_process owl:Class GO:0103083 biolink:NamedThing methylthiobutylmalate isomerase activity Catalysis of the reaction: 2-(4'-methylthio)butylmalate <=> 3-(4'-methylthio)butylmalate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4167 molecular_function owl:Class GO:0140552 biolink:NamedThing TEAD-YAP complex A transcription factor complex that is composed of the one DNA binding protein of the TEAD family and the transcriptional coactivator YAP. tmpzr1t_l9r_go_relaxed.owl TEAD-4-YAP complex|TEAD-2 multiprotein complex|TEAD-1-YAP complex|TEAD-2-YAP complex|TEAD-3-YAP complex https://github.com/geneontology/go-ontology/issues/9300 CORUM:2870 pg 2020-11-17T07:05:23Z GO:0071150|GO:0071148|GO:0071149|GO:0071151|GO:0071147 cellular_component owl:Class GO:0002160 biolink:NamedThing desmosome maintenance The maintenance of a desmosome. A desmosome is a patch-like intercellular junctions found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an interspace of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm. tmpzr1t_l9r_go_relaxed.owl Desmosomes link two cells together; hemidesmosomes attach one cell to the extracellular matrix. hjd 2010-02-09T10:50:59Z biological_process owl:Class GO:0032944 biolink:NamedThing regulation of mononuclear cell proliferation Any process that modulates the frequency, rate or extent of mononuclear cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of peripheral blood mononuclear cell proliferation|regulation of PBMC proliferation biological_process owl:Class GO:0050096 biolink:NamedThing methylaspartate ammonia-lyase activity Catalysis of the reaction: threo-3-methyl-L-aspartate = mesaconate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-threo-3-methylaspartate ammonia-lyase (mesaconate-forming)|L-threo-3-methylaspartate ammonia-lyase activity|beta-methylaspartase activity|3-methylaspartase activity KEGG_REACTION:R03696|EC:4.3.1.2|RHEA:12829|MetaCyc:METHYLASPARTATE-AMMONIA-LYASE-RXN molecular_function owl:Class GO:0019458 biolink:NamedThing methionine catabolic process via 2-oxobutanoate The chemical reactions and pathways resulting in the breakdown of methionine, via the intermediate 2-oxobutanoate. tmpzr1t_l9r_go_relaxed.owl methionine breakdown via 2-oxobutanoate|methionine degradation via 2-oxobutanoate MetaCyc:PWY-701 biological_process owl:Class GO:0017067 biolink:NamedThing tyrosine-ester sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + L-tyrosine methyl ester = L-tyrosine methyl ester 4-sulfate + adenosine 3',5'-diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl aryl sulfotransferase IV|3'-phosphoadenylyl-sulfate:L-tyrosine-methyl-ester sulfotransferase activity|tyrosine-ester sulphotransferase activity|L-tyrosine methyl ester sulfotransferase activity KEGG_REACTION:R04213|EC:2.8.2.9|MetaCyc:TYROSINE-ESTER-SULFOTRANSFERASE-RXN|RHEA:19977 GO:0008128 molecular_function owl:Class GO:0050272 biolink:NamedThing S-carboxymethylcysteine synthase activity Catalysis of the reaction: 3-chloro-L-alanine + thioglycolate = S-carboxymethyl-L-cysteine + chloride + H(+). tmpzr1t_l9r_go_relaxed.owl 3-chloro-L-alanine chloride-lyase (adding thioglycolate)|3-chloro-L-alanine chloride-lyase (adding thioglycolate; S-carboxymethyl-L-cysteine-forming)|S-carboxymethyl-L-cysteine synthase activity RHEA:22868|KEGG_REACTION:R04003|MetaCyc:S-CARBOXYMETHYLCYSTEINE-SYNTHASE-RXN|EC:4.5.1.5 molecular_function owl:Class GO:0042410 biolink:NamedThing 6-carboxyhexanoate-CoA ligase activity Catalysis of the reaction: ATP + CoA + pimelate = AMP + diphosphate + H(+) + pimelyl-CoA. tmpzr1t_l9r_go_relaxed.owl 6-carboxyhexanoate:CoA ligase (AMP-forming)|pimeloyl-CoA synthetase activity|6-carboxyhexanoyl-CoA synthetase activity|pimelyl-CoA synthetase activity RHEA:14781|KEGG_REACTION:R03209|MetaCyc:6-CARBOXYHEXANOATE--COA-LIGASE-RXN|EC:6.2.1.14 molecular_function owl:Class GO:0009342 biolink:NamedThing glutamate synthase complex (NADPH) A complex that possesses glutamate synthase (NADPH) activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097487 biolink:NamedThing multivesicular body, internal vesicle A membrane-bounded vesicle wholly contained within a multivesicular body. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-08T20:34:51Z cellular_component owl:Class GO:0090213 biolink:NamedThing regulation of radial pattern formation Any process that modulates the rate, frequency or extent of radial pattern formation, the regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur. tmpzr1t_l9r_go_relaxed.owl regulation of radial pattern specification tb 2010-01-05T10:59:10Z biological_process owl:Class GO:0003233 biolink:NamedThing bulbus arteriosus morphogenesis The process in which the bulbus arteriosus is generated and organized. The bulbus arteriosus is an elastic cardiac chamber. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:07:30Z biological_process owl:Class GO:0047840 biolink:NamedThing dCTP diphosphatase activity Catalysis of the reaction: dCTP + H2O = dCMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl dCTPase activity|dCTP pyrophosphatase activity|dCTP nucleotidohydrolase activity|deoxy-CTPase activity|deoxycytidine-triphosphatase activity|deoxycytidine triphosphatase activity EC:3.6.1.12|RHEA:22636|Reactome:R-HSA-6786257|MetaCyc:DCTP-PYROPHOSPHATASE-RXN molecular_function owl:Class GO:0047597 biolink:NamedThing 6-oxocineole dehydrogenase activity Catalysis of the reaction: 6-oxocineole + H(+) + NADPH + O(2) = 1,6,6-trimethyl-2,7-dioxabicyclo[3.2.2]nonan-3-one + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 6-oxocineole oxygenase activity|6-oxocineole,NADPH:oxygen oxidoreductase activity KEGG_REACTION:R02995|EC:1.14.13.51|RHEA:24324|MetaCyc:6-OXOCINEOLE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0140295 biolink:NamedThing pathogen-derived receptor ligand activity The activity of a pathogen-derived entity that interacts with a host receptor to activate effector-triggered immunity. tmpzr1t_l9r_go_relaxed.owl innate receptor ligand activity https://github.com/geneontology/go-ontology/issues/16656|https://github.com/geneontology/go-ontology/issues/19194 Note that this term is meant to annotate effectors for which the evolved activity is to act as a ligand to activate (for necrotrophs) or suppress (for biotrophs) the host immune system. It should not be used to annotate PAMPs (pathogen-associated molecular pattern molecules) or similar types of microbial proteins recognized by the host innate immune system (for example, PAMPs are recognized by toll-like receptors (TLRs) and other pattern recognition receptors (PRRs) in both plants and animals). PAMPs activate innate immune responses, protecting the host from infection, but this is not the molecular function of PAMPs; those usually form the structure of the bacterial cell wall. pg 2018-11-26T13:30:21Z molecular_function owl:Class GO:0006307 biolink:NamedThing DNA dealkylation involved in DNA repair The repair of alkylation damage, e.g. the removal of the alkyl group at the O6-position of guanine by O6-alkylguanine-DNA alkyltransferase (AGT). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043818 biolink:NamedThing precorrin-3B synthase activity Catalysis of the reaction: H(+) + NADH + O(2) + precorrin-3A = H(2)O + NAD(+) + precorrin-3B. tmpzr1t_l9r_go_relaxed.owl precorrin-3A,NADH:oxygen oxidoreductase (20-hydroxylating)|precorrin-3X synthase activity|CobG RHEA:17293|MetaCyc:R321-RXN|EC:1.14.13.83|KEGG_REACTION:R05217 molecular_function owl:Class GO:0039009 biolink:NamedThing rectal diverticulum development The process whose specific outcome is the progression of the rectal diverticulum over time, from its formation to the mature structure. The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior. tmpzr1t_l9r_go_relaxed.owl pronephric rectal diverticulum development bf 2010-07-02T09:48:58Z biological_process owl:Class GO:0015167 biolink:NamedThing arabitol transmembrane transporter activity Enables the transfer of an arabitol from one side of a membrane to the other. Arabitol is the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. The D enantiomer is present in lichens and mushrooms. tmpzr1t_l9r_go_relaxed.owl arabinitol transporter activity molecular_function owl:Class GO:0033957 biolink:NamedThing lambda-carrageenase activity Catalysis of the endohydrolysis of beta-1,4-linkages in the backbone of lambda-carrageenan, resulting in the tetrasaccharide alpha-D-Galp2,6S2-(1->3)-beta-D-Galp2S-(1->4)-alpha-D-Galp2,6S2-(1->3)-D-Galp2S. tmpzr1t_l9r_go_relaxed.owl endo-beta-1,4-carrageenose 2,6,2'-trisulfate-hydrolase activity MetaCyc:3.2.1.162-RXN|EC:3.2.1.162 molecular_function owl:Class GO:0003049 biolink:NamedThing regulation of systemic arterial blood pressure by capillary fluid shift The intrinsic circulatory process resulting from capillary fluid shift that modulates the force with which blood travels through the systemic arterial circulatory system. Capillary fluid shift is the movement of fluid across the capillary membrane between the blood and the interstitial fluid compartment. tmpzr1t_l9r_go_relaxed.owl blood pressure regulation by capillary fluid shift biological_process owl:Class GO:0072551 biolink:NamedThing diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity Catalysis of the reaction: diferuloyl mono-(hydroxyferuloyl) spermidine + NADPH + O2 = monoferuloyl di-(hydroxyferuloyl) spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-25T03:04:16Z molecular_function owl:Class GO:0004773 biolink:NamedThing steryl-sulfatase activity Catalysis of the reaction: 3-beta-hydroxyandrost-5-en-17-one 3-sulfate + H2O = 3-beta-hydroxyandrost-5-en-17-one + sulfate. tmpzr1t_l9r_go_relaxed.owl dehydroepiandrosterone sulfate sulfatase activity|steroid sulfate sulfohydrolase activity|steryl-sulfate sulfohydrolase activity|arylsulfatase C activity|steroid sulfatase activity|dehydroepiandrosterone sulfatase activity|phenolic steroid sulfatase activity|sterol sulfatase activity|steroid 3-sulfatase activity|3-beta-hydroxysteroid sulfate sulfatase activity|steryl-sulphatase activity|pregnenolone sulfatase activity RHEA:19873|MetaCyc:STERYL-SULFATASE-RXN|EC:3.1.6.2|Reactome:R-HSA-1606839 molecular_function owl:Class GO:0047452 biolink:NamedThing protoaphin-aglucone dehydratase (cyclizing) activity Catalysis of the reaction: protoaphin aglucone = H(2)O + xanthoaphin. tmpzr1t_l9r_go_relaxed.owl protoaphin dehydratase activity|protoaphin-aglucone hydro-lyase (cyclizing; xanthoaphin-forming)|protoaphin-aglucone hydro-lyase (cyclizing)|protoaphin dehydratase (cyclizing) MetaCyc:4.2.1.73-RXN|EC:4.2.1.73|RHEA:23876|KEGG_REACTION:R03742 molecular_function owl:Class GO:0040039 biolink:NamedThing inductive cell migration Migration of a cell in a multicellular organism that, having changed its location, is required to induce normal properties in one or more cells at its new location. An example of this would be the distal tip cells of Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070635 biolink:NamedThing nicotinamide riboside hydrolase activity Catalysis of the reaction: nicotinamide riboside + H2O = nicotinamide + D-ribose. tmpzr1t_l9r_go_relaxed.owl N-ribosylnicotinamide hydrolase activity|nicotinamide ribonucleoside hydrolase activity MetaCyc:RXN-8441 mah 2009-05-07T02:01:42Z molecular_function owl:Class GO:0071122 biolink:NamedThing alpha9-beta1 integrin-VEGF-A complex A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor A. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-VEGFA complex mah 2009-11-13T02:22:01Z cellular_component owl:Class GO:0019658 biolink:NamedThing glucose fermentation to lactate and acetate The anaerobic chemical reactions and pathways resulting in the breakdown of glucose to lactate and acetate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glucose catabolic process to lactate and acetate|bifidum pathway MetaCyc:P124-PWY biological_process owl:Class GO:0060640 biolink:NamedThing positive regulation of dentin-containing tooth bud formation by mesenchymal-epithelial signaling Any process that initiates the formation of a tooth bud by the secretion of a signal from a mesenchymal cell and its reception and subsequent change in the identity of an epithelial cell of the tooth bud. tmpzr1t_l9r_go_relaxed.owl positive regulation of dentine-containing tooth bud formation by mesenchymal-epithelial signaling|positive regulation of dentine-containing tooth bud formation by mesenchymal-epithelial signalling dph 2009-05-20T04:33:52Z biological_process owl:Class GO:0043252 biolink:NamedThing sodium-independent organic anion transport The directed, sodium-independent, movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033350 biolink:NamedThing apiose biosynthetic process The chemical reactions and pathways resulting in the formation of apiose, the branched tetrose 3-C-(hydroxymethyl)-D-glycero-tetrose. tmpzr1t_l9r_go_relaxed.owl apiose anabolism|apiose synthesis|apiose formation|apiose biosynthesis biological_process owl:Class GO:0033349 biolink:NamedThing apiose metabolic process The chemical reactions and pathways involving apiose, the branched tetrose 3-C-(hydroxymethyl)-D-glycero-tetrose. tmpzr1t_l9r_go_relaxed.owl apiose metabolism biological_process owl:Class GO:1990389 biolink:NamedThing CUE1-UBC7 ubiquitin-conjugating enzyme complex A protein complex capable of ubiquitin-conjugating enzyme activity during ER-associated protein degradation (ERAD). In S. cerevisiae, UBC7 is the ubiquitin-conjugating enzyme (E2) and requires binding to the ER surface by CUE1. tmpzr1t_l9r_go_relaxed.owl CUE1-UBC7 ubiquitin-conjugating enzyme (E2) An example of this is UBC7 in Saccharomyces cerevisiae (Q02159) in PMID:16179953 (inferred from direct assay). bhm 2014-06-02T15:35:58Z cellular_component owl:Class GO:0031172 biolink:NamedThing ornithine N5-monooxygenase activity Catalysis of the reaction: L-ornithine + O2 + H+ = N5-hydroxy-L-ornithine + H2O. tmpzr1t_l9r_go_relaxed.owl L-ornithine 5-monooxygenase activity MetaCyc:RXN-11128|RHEA:41508 molecular_function owl:Class GO:1990527 biolink:NamedThing Tec1p-Ste12p-Dig1p complex A multiprotein complex that is involved in the transcriptional regulation of primarily filamentation genes, but also mating genes, in the yeast S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl rb 2014-11-05T22:55:17Z cellular_component owl:Class GO:0062213 biolink:NamedThing peroxynitrite isomerase activity Catalysis of the reaction: peroxynitrite = nitrate. tmpzr1t_l9r_go_relaxed.owl RHEA:63116 dph 2020-02-22T13:57:50Z molecular_function owl:Class GO:0036285 biolink:NamedThing SAGA complex assembly The aggregation, arrangement and bonding together of a set of components to form a SAGA complex, a SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof. tmpzr1t_l9r_go_relaxed.owl SAGA complex formation bf 2012-07-16T10:30:00Z biological_process owl:Class GO:0016499 biolink:NamedThing orexin receptor activity Combining with orexin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042007 biolink:NamedThing interleukin-18 binding Binding to interleukin-18. tmpzr1t_l9r_go_relaxed.owl IL-18 binding molecular_function owl:Class GO:0030643 biolink:NamedThing cellular phosphate ion homeostasis Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055062 biolink:NamedThing phosphate ion homeostasis Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004581 biolink:NamedThing dolichyl-phosphate beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + dolichyl phosphate = UDP + dolichyl beta-D-glucosyl phosphate. tmpzr1t_l9r_go_relaxed.owl UDP-glucose dolichyl-phosphate glucosyltransferase activity|UDP-glucose:dolichyl-phosphate beta-D-glucosyltransferase activity|uridine diphosphoglucose-dolichol glucosyltransferase activity|polyprenyl phosphate:UDP-D-glucose glucosyltransferase activity|UDP-glucose:dolichyl monophosphate glucosyltransferase activity|UDP-glucose:dolicholphosphoryl glucosyltransferase activity|UDPglucose:dolichyl-phosphate beta-D-glucosyltransferase activity|UDP-glucose:dolichyl phosphate glucosyltransferase activity|UDP-glucose:dolichol phosphate glucosyltransferase activity EC:2.4.1.117|RHEA:15401|Reactome:R-HSA-446214|MetaCyc:2.4.1.117-RXN molecular_function owl:Class GO:0002151 biolink:NamedThing G-quadruplex RNA binding Binding to a G-quadruplex RNA structure, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad. tmpzr1t_l9r_go_relaxed.owl G quadruplex binding|G quartet binding|G quartet RNA binding|G-quartet binding The structures of RNA and DNA G quartets differ regarding sugar conformation so that a protein binding to the RNA structure might not bind to the DNA structure. hjd 2009-10-22T01:38:02Z molecular_function owl:Class GO:2001296 biolink:NamedThing N(omega)-methyl-L-arginine metabolic process The chemical reactions and pathways involving N(omega)-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl N(omega)-methyl-L-arginine metabolism pr 2012-02-14T03:38:16Z biological_process owl:Class GO:0006049 biolink:NamedThing UDP-N-acetylglucosamine catabolic process The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylglucosamine catabolism|UDP-N-acetylglucosamine degradation|UDP-N-acetylglucosamine breakdown biological_process owl:Class GO:0060418 biolink:NamedThing yolk plasma Discrete structures that partition the water-soluble portion of the yolk of oocytes and ova, which may or may not be membrane enclosed. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018459 biolink:NamedThing carveol dehydrogenase activity Catalysis of the reaction: (1S,5R)-carveol + NADP(+) = (R)-carvone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (-)-trans-carveol:NADP+ oxidoreductase activity|(-)-trans-carveol dehydrogenase activity UM-BBD_reactionID:r0714|RHEA:13629|KEGG_REACTION:R03114|MetaCyc:CARVEOL-DEHYDROGENASE-RXN|EC:1.1.1.243 molecular_function owl:Class GO:0007428 biolink:NamedThing primary branching, open tracheal system Formation of primary branches in the open tracheal system. These form from small groups of cells that migrate out at specific positions, organizing into tubes as they migrate. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl primary tracheal branching biological_process owl:Class GO:0047345 biolink:NamedThing ribose-5-phosphate adenylyltransferase activity Catalysis of the reaction: D-ribose 5-phosphate + ADP + H(+) = ADP-ribose + phosphate. tmpzr1t_l9r_go_relaxed.owl ADP ribose phosphorylase activity|adenosine diphosphoribose phosphorylase activity|ADP:D-ribose-5-phosphate adenylyltransferase activity|ADP-ribose phosphorylase activity|ADP:ribose-5-phosphate adenylyltransferase activity EC:2.7.7.35|MetaCyc:2.7.7.35-RXN|KEGG_REACTION:R01052|RHEA:14529 molecular_function owl:Class GO:0034951 biolink:NamedThing o-hydroxylaminobenzoate mutase activity Catalysis of the reaction: o-hydroxylaminobenzoate = 3-hydroxyanthranilate. tmpzr1t_l9r_go_relaxed.owl EC:5.4.99.-|MetaCyc:RXN-8846|UM-BBD_reactionID:r1026 molecular_function owl:Class GO:0018740 biolink:NamedThing 2'-hydroxybiphenyl-2-sulfinate desulfinase activity Catalysis of the reaction: 2'-hydroxybiphenyl-2-sulfinate + H(2)O = biphenyl-2-ol + sulfite. tmpzr1t_l9r_go_relaxed.owl 2'-hydroxybiphenyl-2-sulfinate sulfinolyase activity|DszB|2-(2-hydroxyphenyl)benzenesulfinate desulfinase activity|gene dszB-encoded hydrolase activity|2-(2-hydroxyphenyl) benzenesulfinate sulfohydrolase activity|2-(2-hydroxyphenyl) benzenesulfinate:H2O hydrolase activity|HPBS desulfinase activity|2'-hydroxybiphenyl-2-sulfinate sulfohydrolase activity|2-(2-hydroxyphenyl)benzenesulphinate hydrolase activity|2-(2-hydroxyphenyl)benzenesulfinate hydrolase activity|dibenzothiophene desulfurization enzyme B|HBPSi desulfinase activity|2-(2'-hydroxyphenyl)benzenesulfinate desulfinase activity EC:3.13.1.3|KEGG_REACTION:R07311|MetaCyc:RXN-624|RHEA:12945|UM-BBD_enzymeID:e0216 molecular_function owl:Class GO:0017042 biolink:NamedThing glycosylceramidase activity Catalysis of the reaction: glycosyl-N-acylsphingosine + H2O = a sugar + N-acylsphingosine. tmpzr1t_l9r_go_relaxed.owl glycosyl ceramide glycosylhydrolase activity|lactase-phlorizin hydrolase|phloridzin beta-glucosidase activity|cerebrosidase activity|glycosyl-N-acylsphingosine glycohydrolase activity|phloridzin glucosidase activity|phlorizin hydrolase activity|phloretin-glucosidase activity MetaCyc:GLYCOSYLCERAMIDASE-RXN|EC:3.2.1.62 molecular_function owl:Class GO:0019305 biolink:NamedThing dTDP-rhamnose biosynthetic process The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP-rhamnose synthesis|dTDP-rhamnose anabolism|dTDP-rhamnose biosynthesis|dTDP-rhamnose formation MetaCyc:DTDPRHAMSYN-PWY|MetaCyc:PWY-3221 biological_process owl:Class GO:0034796 biolink:NamedThing adipate-CoA ligase activity Catalysis of the reaction: adipate + CoASH = adipyl-CoA + OH-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1060 molecular_function owl:Class GO:0043724 biolink:NamedThing 2-keto-3-deoxygalactonate aldolase activity Catalysis of the reaction: 2-keto-3-deoxygalactonate = D-glyceraldehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl KDGal aldolase activity molecular_function owl:Class GO:0062132 biolink:NamedThing regulation of L-glutamine biosynthetic process Any process that modulates the rate, frequency or extent of L-glutamine biosynthesis. tmpzr1t_l9r_go_relaxed.owl dph 2019-06-27T13:44:21Z biological_process owl:Class GO:0050579 biolink:NamedThing vellosimine dehydrogenase activity Catalysis of the reaction: 10-deoxysarpagine + NADP(+) = H(+) + NADPH + vellosimine. tmpzr1t_l9r_go_relaxed.owl 10-deoxysarpagine:NADP+ oxidoreductase activity EC:1.1.1.273|RHEA:20029|KEGG_REACTION:R05827|MetaCyc:1.1.1.273-RXN molecular_function owl:Class GO:0070462 biolink:NamedThing plus-end specific microtubule depolymerization The removal of tubulin heterodimers from the plus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015218 biolink:NamedThing pyrimidine nucleotide transmembrane transporter activity Enables the transfer of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905177 biolink:NamedThing tracheary element differentiation The process in which a relatively unspecialized cell acquires the specialized features of a tracheary element. tmpzr1t_l9r_go_relaxed.owl tb 2016-05-04T22:14:33Z biological_process owl:Class GO:0061617 biolink:NamedThing MICOS complex Mitochondrial inner membrane complex involved in maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. In Saccharomyces cerevisiae the complex has six subunits: MIC10, MIC12, MIC19, MIC26, MIC27, and MIC60. tmpzr1t_l9r_go_relaxed.owl mitochondrial contact site and cristae organizing system|Fcj1 complex|MINOS complex|MitOS complex dph 2014-04-14T07:18:13Z cellular_component owl:Class GO:0015612 biolink:NamedThing ABC-type L-arabinose transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + L-arabinose(out) -> ADP + phosphate + L-arabinose(in). tmpzr1t_l9r_go_relaxed.owl L-arabinose-importing ATPase activity|L-arabinose porter activity EC:7.5.2.13|MetaCyc:ABC-2-RXN|EC:7.5.2.12|RHEA:30007 molecular_function owl:Class GO:0050300 biolink:NamedThing aminoglycoside 6-kinase activity Catalysis of the reaction: ATP + streptomycin = ADP + 2 H(+) + streptomycin 6-phosphate. tmpzr1t_l9r_go_relaxed.owl streptomycin 6-kinase (phosphorylating)|SM 6-kinase activity|streptidine kinase activity|streptomycin 6-O-phosphotransferase activity|streptomycin 6-phosphotransferase activity|streptidine kinase (phosphorylating)|ATP:streptomycin 6-phosphotransferase activity|APH(6) activity|streptomycin 6-kinase activity MetaCyc:STREPTOMYCIN-6-KINASE-RXN|EC:2.7.1.72|KEGG_REACTION:R02225|RHEA:22268 molecular_function owl:Class GO:1902343 biolink:NamedThing regulation of maltose transport Any process that modulates the frequency, rate or extent of maltose transport. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T17:16:18Z biological_process owl:Class GO:0071204 biolink:NamedThing histone pre-mRNA 3'end processing complex A ribonucleoprotein that binds to specific sites in, and is required for cleavage of, the 3'-end of histone pre-mRNAs. The complex contains the U7 snRNP and additional proteins, including the stem-loop binding protein (SLBP) and the exonuclease 3'hExo/Eri-1. tmpzr1t_l9r_go_relaxed.owl histone 3'end pre-mRNA complex mah 2009-11-25T11:11:02Z cellular_component owl:Class GO:0002306 biolink:NamedThing CD4-positive gamma-delta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD4-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl CD4-positive, gamma-delta intraepithelial T-cell differentiation|CD4-positive, gamma-delta intraepithelial T-lymphocyte differentiation|CD4-positive, gamma-delta intraepithelial T cell development|CD4-positive, gamma-delta intraepithelial T lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0035087 biolink:NamedThing siRNA loading onto RISC involved in RNA interference The transfer of small interfering RNA molecules (siRNAs) from the Dicer family of enzymes that cleave the double-stranded RNA, onto the nuclease-containing RNA-initiated silencing complex (RISC), in the context of RNA interference. tmpzr1t_l9r_go_relaxed.owl RNA interference, siRNA loading onto RISC biological_process owl:Class GO:0019561 biolink:NamedThing anaerobic phenylalanine oxidation The chemical reactions and pathways resulting in the breakdown of phenylalanine under anaerobic conditions; occurs via the intermediates phenylpyruvate and phenylacetaldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ANAPHENOXI-PWY biological_process owl:Class GO:0102692 biolink:NamedThing benzyladenine UDP glycosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + N-benzyladenine <=> H+ + N-benzyl-9-(alpha-D-glucosyl)adenine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4730 molecular_function owl:Class GO:0031899 biolink:NamedThing chromoplast inner membrane The inner, i.e. lumen-facing, lipid bilayer of the chromoplast envelope; also faces the chromoplast stroma. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042618 biolink:NamedThing poly-hydroxybutyrate metabolic process The chemical reactions and pathways involving poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells. tmpzr1t_l9r_go_relaxed.owl PHB metabolism|PHB metabolic process|poly-hydroxybutyrate metabolism biological_process owl:Class GO:0015143 biolink:NamedThing urate transmembrane transporter activity Enables the transfer of urate from one side of a membrane to the other. Urate is the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals. tmpzr1t_l9r_go_relaxed.owl uric acid transmembrane transporter activity Reactome:R-HSA-561253|Reactome:R-HSA-2872497|Reactome:R-HSA-5625210 molecular_function owl:Class GO:1901702 biolink:NamedThing salt transmembrane transporter activity Enables the transfer of salt from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl pr 2012-12-13T15:14:47Z molecular_function owl:Class GO:0072357 biolink:NamedThing PTW/PP1 phosphatase complex A protein serine/threonine phosphatase complex that contains a catalytic subunit (PPP1CA, PPP1CB or PPP1CC) and the regulatory subunits PPP1R10 (PNUTS), TOX4 and WDR82, and plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-15T03:32:27Z cellular_component owl:Class GO:1901253 biolink:NamedThing negative regulation of intracellular transport of viral material Any process that stops, prevents or reduces the frequency, rate or extent of intracellular transport of viral material. tmpzr1t_l9r_go_relaxed.owl inhibition of egress of virus within host cell|negative regulation of movement of virus within host cell|down regulation of viral egress|negative regulation of egress of virus within host cell|downregulation of movement of virus within host cell|down-regulation of viral egress|down-regulation of egress of virus within host cell|down regulation of movement of virus within host cell|inhibition of movement of virus within host cell|inhibition of viral egress|down regulation of egress of virus within host cell|downregulation of viral egress|negative regulation of viral egress|down-regulation of movement of virus within host cell|downregulation of egress of virus within host cell ss 2012-08-09T05:45:47Z biological_process owl:Class GO:0047827 biolink:NamedThing D-lysopine dehydrogenase activity Catalysis of the reaction: D-lysopine + H(2)O + NADP(+) = L-lysine + H(+) + NADPH + pyruvate. tmpzr1t_l9r_go_relaxed.owl N2-(D-1-carboxyethyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming)|2-N-(D-1-carboxyethyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming)|lysopine dehydrogenase activity|D(+)-lysopine dehydrogenase activity|D-lysopine synthase activity EC:1.5.1.16|KEGG_REACTION:R00452|MetaCyc:D-LYSOPINE-DEHYDROGENASE-RXN|RHEA:17625 molecular_function owl:Class GO:0035443 biolink:NamedThing tripeptide transmembrane transport The directed movement of a tripeptide across a membrane by means of some agent such as a transporter or pore. A tripeptide is a compound containing three amino acids linked together by peptide bonds. tmpzr1t_l9r_go_relaxed.owl tripeptide membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-13T09:20:25Z biological_process owl:Class GO:0000342 biolink:NamedThing RNA cap 4 binding Binding to a hypermethylated cap structure consisting of 7-methylguanosine (m(7)G) followed by four methylated nucleotides (cap 4): 7-methylguanosine-ppp-N6, N6, 2'-O-trimethyladenosine-p-2'-O-methyladenosine-p-2'-O-methylcytosine-p-N3, 2'-O-dimethyluridine Such caps are known to be found at the 5' ends of SL RNAs of trypanosomatid protozoa. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010211 biolink:NamedThing IAA-Leu conjugate hydrolase activity Catalysis of the reaction: indole-3-acetyl-leucine + H2O = indole-3-acetate + L-leucine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2982 molecular_function owl:Class GO:0021942 biolink:NamedThing radial glia guided migration of Purkinje cell The migration of postmitotic a Purkinje cell along radial glial cells from the ventricular zone to the Purkinje cell layer. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140246 biolink:NamedThing protein catabolic process at synapse The chemical reactions and pathways resulting in the breakdown of a protein at a synapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/210 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:12:51Z biological_process owl:Class GO:0052891 biolink:NamedThing aliphatic (S)-hydroxynitrile lyase activity Catalysis of the reaction: an aliphatic (S)-hydroxynitrile = an aliphatic aldehyde or ketone + cyanide. tmpzr1t_l9r_go_relaxed.owl (S)-oxynitrilase activity|hydroxynitrile lyase activity|(S)-selective hydroxynitrile lyase activity|(S)-cyanohydrin producing hydroxynitrile lyase activity|oxynitrilase activity|(S)-hydroxynitrile lyase activity|(S)-cyanohydrin carbonyl-lyase (cyanide forming) activity EC:4.1.2.47|MetaCyc:RXN-11731 molecular_function owl:Class GO:0043693 biolink:NamedThing monoterpene biosynthetic process The chemical reactions and pathways resulting in the formation of monoterpenes, terpenes with a C10 structure. tmpzr1t_l9r_go_relaxed.owl monoterpene biosynthesis biological_process owl:Class GO:0010082 biolink:NamedThing regulation of root meristem growth Any process involved in maintaining the size and shape of a root meristem. tmpzr1t_l9r_go_relaxed.owl regulation of root meristem size biological_process owl:Class GO:0010475 biolink:NamedThing galactose-1-phosphate guanylyltransferase (GDP) activity Catalysis of the reaction: GDP + L-galactose 1-phosphate = phosphate + GDP-galactose. tmpzr1t_l9r_go_relaxed.owl GDP:galactose-1-phosphate guanyltransferase activity molecular_function owl:Class GO:0033923 biolink:NamedThing glucan 1,6-alpha-isomaltosidase activity Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in polysaccharides, to remove successive isomaltose units from the non-reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl isomalto-dextranase activity|isomaltodextranase activity|exo-isomaltohydrolase activity|1,6-alpha-D-glucan isomaltohydrolase activity|G2-dextranase activity MetaCyc:3.2.1.94-RXN|EC:3.2.1.94 molecular_function owl:Class GO:0010459 biolink:NamedThing negative regulation of heart rate Any process that stops, prevents or reduces the frequency or rate of heart contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902933 biolink:NamedThing isopentenol metabolic process The chemical reactions and pathways involving isopentenol. tmpzr1t_l9r_go_relaxed.owl isopentenol metabolism tt 2014-04-24T16:51:35Z biological_process owl:Class GO:0032574 biolink:NamedThing 5'-3' RNA helicase activity Unwinding of an RNA helix in the 5' to 3' direction, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent 5'-3' RNA helicase activity|5' to 3' RNA helicase activity|ATP-dependent 5' to 3' RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 Reactome:R-HSA-9694265|Reactome:R-HSA-9682695 GO:0032575 molecular_function owl:Class GO:0090292 biolink:NamedThing nuclear matrix anchoring at nuclear membrane The process in which the nuclear matrix, the dense fibrillar network lying on the inner side of the nuclear membrane, is directly or indirectly linked to the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl nucleoskeleton anchoring at nuclear membrane tb 2010-02-22T03:05:13Z biological_process owl:Class GO:0043578 biolink:NamedThing nuclear matrix organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear matrix, the dense fibrillar network lying on the inner side of the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl nuclear matrix organisation|nucleoskeleton organization|nuclear matrix organization and biogenesis biological_process owl:Class GO:0010409 biolink:NamedThing extensin metabolic process The chemical reactions and pathways involving extensins, a group of 60-90 kDNA hydroxyproline (Hyp)-rich glycoproteins whose polypeptide backbone consists of many repeats of structural Ser(Hyp)4-6 motifs, with heavily glycosylated 1-4 arabinose residues O-linked to contiguous stretches of Hyp residues, with most of the Ser residues being O-galactosylated. tmpzr1t_l9r_go_relaxed.owl extensin metabolism biological_process owl:Class GO:0010404 biolink:NamedThing cell wall hydroxyproline-rich glycoprotein metabolic process The chemical reactions and pathways involving a cell wall hydroxyproline-rich glycoprotein that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. tmpzr1t_l9r_go_relaxed.owl cell wall hydroxyproline-rich glycoprotein metabolism biological_process owl:Class GO:0050048 biolink:NamedThing L-leucine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl leucine-alpha-ketoglutarate transaminase activity|leucine transaminase activity|L-leucine aminotransferase activity|leucine aminotransferase activity|leucine 2-oxoglutarate transaminase activity RHEA:18321|MetaCyc:LEUCINE-AMINOTRANSFERASE-RXN|EC:2.6.1.6 molecular_function owl:Class GO:0031021 biolink:NamedThing interphase microtubule organizing center A microtubule organizing center found in interphase cells, which organize a longitudinal array of three to five MT bundles from the nuclear envelope during interphase. Each MT bundle is composed of two to seven MTs arranged in an antiparallel configuration, with the dynamic MT plus ends extending toward the cell tips and stable minus ends near the nucleus. tmpzr1t_l9r_go_relaxed.owl interphase microtubule organising center|interphase MTOC|iMTOC cellular_component owl:Class GO:2000308 biolink:NamedThing negative regulation of tumor necrosis factor (ligand) superfamily member 11 production Any process that stops, prevents or reduces the frequency, rate or extent of tumor necrosis factor (ligand) superfamily member 11 production. tmpzr1t_l9r_go_relaxed.owl negative regulation of RANKL production|negative regulation of TNFSF11 production mah 2011-01-17T10:44:33Z biological_process owl:Class GO:0033226 biolink:NamedThing 2-aminoethylphosphonate binding Binding to 2-aminoethylphosphonate. tmpzr1t_l9r_go_relaxed.owl ciliatine binding|2-phosphonoethylamine binding molecular_function owl:Class GO:0102154 biolink:NamedThing 8C-naringenin dibenzoylmethane tautomer glucosyltransferase activity Catalysis of the reaction: 2,4,4',6-tetrahydroxydibenzoylmethane + UDP-alpha-D-glucose <=> 8C-glucosyl-2-hydroxynaringenin + UDP + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11685 molecular_function owl:Class GO:0080013 biolink:NamedThing (E,E)-geranyllinalool synthase activity Catalysis of the reaction: all-trans-geranyl-geranyl diphosphate + H2O = (E,E)-geranyllinalool + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:38155|MetaCyc:RXN-10441 molecular_function owl:Class GO:0090058 biolink:NamedThing metaxylem development The process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-11T03:05:15Z biological_process owl:Class GO:0030626 biolink:NamedThing U12 snRNA binding Binding to a U12 small nuclear RNA (U12 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904414 biolink:NamedThing positive regulation of cardiac ventricle development Any process that activates or increases the frequency, rate or extent of cardiac ventricle development. tmpzr1t_l9r_go_relaxed.owl up-regulation of cardiac ventricle development|up regulation of cardiac ventricle development|upregulation of cardiac ventricle development|activation of cardiac ventricle development sl 2015-06-25T19:52:27Z biological_process owl:Class GO:0050429 biolink:NamedThing calcium-dependent phospholipase C activity Catalysis of the reaction: a phosphatidylcholine + H2O = 1,2-diacylglycerol + choline phosphate. This reaction requires Ca2+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006212 biolink:NamedThing uracil catabolic process The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. tmpzr1t_l9r_go_relaxed.owl uracil catabolism|uracil breakdown|uracil degradation biological_process owl:Class GO:0050548 biolink:NamedThing trans-feruloyl-CoA hydratase activity Catalysis of the reaction: trans-feruloyl-CoA + H2O = 4-hydroxy-3-methoxyphenyl-beta-hydroxypropionyl-CoA. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-3-methoxyphenyl-beta-hydroxypropanoyl-CoA hydro-lyase (trans-feruloyl-CoA-forming)|trans-feruloyl-CoA hydro-lyase activity EC:4.2.1.101|MetaCyc:4.2.1.101-RXN|RHEA:14517 molecular_function owl:Class GO:0090736 biolink:NamedThing MATH domain binding Binding to a meprin and TRAF homology (MATH) domain. tmpzr1t_l9r_go_relaxed.owl tb 2017-02-06T17:08:28Z molecular_function owl:Class GO:0033540 biolink:NamedThing fatty acid beta-oxidation using acyl-CoA oxidase A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed by oxidation pass directly to oxygen and produce hydrogen peroxide, which is cleaved by peroxisomal catalases. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5136 biological_process owl:Class GO:0061533 biolink:NamedThing norepinephrine secretion, neurotransmission The regulated release of norepinephrine by a cell, in which the norepinephrine acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl noradrenaline secretion, neurotransmission dph 2013-06-21T16:05:08Z biological_process owl:Class GO:0072003 biolink:NamedThing kidney rudiment formation The developmental process pertaining to the initial formation of a kidney rudiment from unspecified parts. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine. tmpzr1t_l9r_go_relaxed.owl kidney anlage formation mah 2010-01-25T11:18:58Z biological_process owl:Class GO:0047613 biolink:NamedThing aconitate decarboxylase activity Catalysis of the reaction: cis-aconitate + H(+) = CO(2) + itaconate. tmpzr1t_l9r_go_relaxed.owl cis-aconitic decarboxylase activity|cis-aconitate carboxy-lyase activity|CAD activity|cis-aconitate carboxy-lyase (itaconate-forming) MetaCyc:ACONITATE-DECARBOXYLASE-RXN|KEGG_REACTION:R02243|RHEA:15253|EC:4.1.1.6 molecular_function owl:Class GO:0036261 biolink:NamedThing 7-methylguanosine cap hypermethylation Hypermethylation of the 7-(mono)methylguanosine (m(7)G) cap structure at the 2' position of the guanosine residue to convert a mono-methylated cap to a 2,2,7-trimethylguanosine cap structure. This type of cap modification occurs on small nuclear RNAs (snRNAs) and small nucleolar RNAs (snoRNAs) and is dependent on prior guanine-N7 methylation. tmpzr1t_l9r_go_relaxed.owl 2,2,7-trimethylguanosine cap formation|hypermethylation of snRNA cap|snRNA capping|TMG cap formation|hypermethylation of snoRNA cap|conversion of m(7)G to m(3)G|snoRNA capping|m(7)G cap hypermethylation bf 2012-06-15T02:21:39Z biological_process owl:Class GO:0018818 biolink:NamedThing acetylene hydratase activity Catalysis of the reaction: acetaldehyde = acetylene + H(2)O. tmpzr1t_l9r_go_relaxed.owl acetaldehyde hydro-lyase activity|AH|AHy MetaCyc:R141-RXN|UM-BBD_reactionID:r0591|EC:4.2.1.112|RHEA:17885|KEGG_REACTION:R05380 molecular_function owl:Class GO:0051501 biolink:NamedThing diterpene phytoalexin metabolic process The chemical reactions and pathways involving diterpene phytoalexins, a class of diterpene formed in plants in response to fungal infection, physical damage, chemical injury, or a pathogenic process; they are sometimes referred to as plant antibiotics. Diterpenes are unsaturated hydrocarbons containing 20 carbon atoms and 4 branched methyl groups and are made up of isoprenoid units. tmpzr1t_l9r_go_relaxed.owl diterpene phytoalexin metabolism biological_process owl:Class GO:0035069 biolink:NamedThing larval midgut histolysis The stage-specific break down of the larval midgut during Drosophila metamorphosis, to allow replacement of larval structures by tissues and structures that form the adult fly. tmpzr1t_l9r_go_relaxed.owl larval midgut regression biological_process owl:Class GO:0015374 biolink:NamedThing neutral, basic amino acid:sodium:chloride symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neutral/basic amino acid(out) + Na+(out) + Cl-(out) = neutral/basic amino acid(in) + Na+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl neutral, cationic amino acid:sodium:chloride symporter activity molecular_function owl:Class GO:0015553 biolink:NamedThing xanthosine transmembrane transporter activity Enables the transfer of xanthosine, xanthine riboside, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071996 biolink:NamedThing glutathione transmembrane import into vacuole The directed movement of glutathione into the vacuole across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl glutathione transport into vacuole mah 2010-10-25T02:12:01Z biological_process owl:Class GO:0033758 biolink:NamedThing clavaminate synthase activity Catalysis of the reactions: deoxyamidinoproclavaminate + 2-oxoglutarate + O2 = amidinoproclavaminate + succinate + CO2 + H2O; proclavaminate + 2-oxoglutarate + O2 = dihydroclavaminate + succinate + CO2 + 2 H2O; and dihydroclavaminate + 2-oxoglutarate + O2 = clavaminate + succinate + CO2 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl clavaminic acid synthase activity|clavaminate synthase 2 activity|deoxyamidinoproclavaminate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity EC:1.14.11.21|RHEA:20021|MetaCyc:1.14.11.21-RXN molecular_function owl:Class GO:0050462 biolink:NamedThing N-acetylneuraminate synthase activity Catalysis of the reaction: phosphoenolpyruvate + N-acetyl-D-mannosamine + H2O = phosphate + N-acetylneuraminate. tmpzr1t_l9r_go_relaxed.owl (NANA)condensing enzyme activity|NeuAc synthase activity|N-acetylneuraminate pyruvate-lyase (pyruvate-phosphorylating) activity|phosphoenolpyruvate:N-acetyl-D-mannosamine C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)|N-acetylneuraminic acid synthase activity EC:2.5.1.56|RHEA:19273|MetaCyc:N-ACETYLNEURAMINATE-SYNTHASE-RXN molecular_function owl:Class GO:0046003 biolink:NamedThing negative regulation of syncytial blastoderm mitotic cell cycle Any process that stops, prevents or reduces the rate or extent of progression through the syncytial blastoderm mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of syncytial blastoderm cell cycle progression|inhibition of progression through syncytial blastoderm mitotic cell cycle|negative regulation of progression through syncytial blastoderm mitotic cell cycle|down regulation of progression through syncytial blastoderm mitotic cell cycle|downregulation of progression through syncytial blastoderm mitotic cell cycle|down-regulation of progression through syncytial blastoderm mitotic cell cycle biological_process owl:Class GO:0106077 biolink:NamedThing histone succinylation The modification of a histone by the addition of an succinyl group. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-15T18:27:16Z biological_process owl:Class GO:0031887 biolink:NamedThing lipid droplet transport along microtubule The directed movement of a lipid droplet along a microtubule, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl lipid particle transport along microtubule|adiposome transport along microtubule|lipid body transport along microtubule biological_process owl:Class GO:0080075 biolink:NamedThing spermidine:feruloyl CoA N-acyltransferase activity Catalysis of the transfer of a feruloyl group to a nitrogen atom on the spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T04:17:50Z molecular_function owl:Class GO:0102657 biolink:NamedThing 1-18:1-2-16:0-monogalactosyldiacylglycerol palmitoyl-lipid 7-desaturase activity Catalysis of the reaction: 1-18:1-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:1-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.42|MetaCyc:RXN-1728 molecular_function owl:Class GO:1990277 biolink:NamedThing parasexual conjugation with cellular fusion A conjugation process that results in the union of cellular and genetic information from compatible mating types, without the formation of zygotes. An example of this process is found in Candida albicans. tmpzr1t_l9r_go_relaxed.owl mating pr 2014-01-28T10:30:20Z biological_process owl:Class GO:0017171 biolink:NamedThing serine hydrolase activity Catalysis of the hydrolysis of a substrate by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042673 biolink:NamedThing regulation of retinal cone cell fate specification Any process that mediates the specification of a cell into a retinal cone cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900625 biolink:NamedThing positive regulation of monocyte aggregation Any process that activates or increases the frequency, rate or extent of monocyte aggregation. tmpzr1t_l9r_go_relaxed.owl up-regulation of monocyte aggregation|up-regulation of mononuclear phagocyte aggregation|activation of mononuclear phagocyte aggregation|upregulation of mononuclear phagocyte aggregation|activation of monocyte aggregation|upregulation of monocyte aggregation|up regulation of monocyte aggregation|positive regulation of mononuclear phagocyte aggregation|up regulation of mononuclear phagocyte aggregation vk 2012-05-21T01:07:44Z biological_process owl:Class GO:0002558 biolink:NamedThing type I hypersensitivity mediated by mast cells An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047592 biolink:NamedThing 5-pyridoxate dioxygenase activity Catalysis of the reaction: 5-pyridoxate + NADPH + O(2) = 2-(acetamidomethylene)-3-(hydroxymethyl)succinate) + NADP(+). tmpzr1t_l9r_go_relaxed.owl 5-pyridoxate oxidase activity https://github.com/geneontology/go-ontology/issues/21412 EC:1.14.13.241|RHEA:11152|KEGG_REACTION:R04570|MetaCyc:5-PYRIDOXATE-DIOXYGENASE-RXN Formerly EC:1.14.12.5. molecular_function owl:Class GO:0097124 biolink:NamedThing cyclin A2-CDK2 complex A protein complex consisting of cyclin A2 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:44:19Z cellular_component owl:Class GO:0010177 biolink:NamedThing 2-(2'-methylthio)ethylmalate synthase activity Catalysis of the reaction: 2-oxo-4-methylthiobutanoate + acetyl-CoA + H2O = 2-(2'-methylthio)ethylmalic-acid + coenzyme A + H+. tmpzr1t_l9r_go_relaxed.owl methylthioalkylmalate synthase activity MetaCyc:RXN-2202|EC:2.3.3.17 molecular_function owl:Class GO:0102732 biolink:NamedThing myo-inositol-1,2,3,4,6-heptakisphosphate 5-kinase activity Catalysis of the reaction: 1L-myo-inositol 1,2,3,4,6-pentakisphosphate(10-) + ATP = H+ + myo-inositol hexakisphosphate(12-) + ADP. tmpzr1t_l9r_go_relaxed.owl EC:2.7.1.140|MetaCyc:RXN-7186 molecular_function owl:Class GO:1990217 biolink:NamedThing suppression by symbiont of host phytoalexin production Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of phytoalexin production in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host phytoalexin production ml 2013-10-10T15:49:33Z biological_process owl:Class GO:0044231 biolink:NamedThing host cell presynaptic membrane A specialized area of membrane of the host axon terminal that faces the plasma membrane of the host neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many host synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane. tmpzr1t_l9r_go_relaxed.owl other organism presynaptic membrane|other organism pre-synaptic membrane|host cell pre-synaptic membrane jl 2009-12-08T02:11:18Z GO:0072556 cellular_component owl:Class GO:0090505 biolink:NamedThing epiboly involved in wound healing The expansion of one cell sheet over other cells involved in wound healing. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-22T12:38:51Z biological_process owl:Class GO:0060840 biolink:NamedThing artery development The progression of the artery over time, from its initial formation to the mature structure. An artery is a blood vessel that carries blood away from the heart to a capillary bed. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:10:51Z biological_process owl:Class GO:0031702 biolink:NamedThing type 1 angiotensin receptor binding Binding to a type 1 angiotensin receptor. tmpzr1t_l9r_go_relaxed.owl AT1 receptor binding|type 1 angiotensin receptor ligand molecular_function owl:Class GO:0031356 biolink:NamedThing intrinsic component of chloroplast inner membrane The component of the chloroplast inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane. tmpzr1t_l9r_go_relaxed.owl intrinsic to chloroplast inner membrane cellular_component owl:Class GO:0033188 biolink:NamedThing sphingomyelin synthase activity Catalysis of the reaction: 1,2-diacyl-sn-glycero-3-phosphocholine + ceramide = 1,2-diacyl-sn-glycerol + sphingomyelin. tmpzr1t_l9r_go_relaxed.owl SMS1|ceramide:phosphatidylcholine cholinephosphotransferase activity|phosphatidylcholine:ceramide cholinephosphotransferase activity|SM synthase activity|SMS2 Reactome:R-HSA-429786|KEGG_REACTION:R08969|EC:2.7.8.27|RHEA:18765|MetaCyc:2.7.8.27-RXN|Reactome:R-HSA-429798 molecular_function owl:Class GO:0034042 biolink:NamedThing 5-formyluracil DNA N-glycosylase activity Catalysis of the removal of 5-formyluracil bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar. tmpzr1t_l9r_go_relaxed.owl 5-foU DNA N-glycosylase activity molecular_function owl:Class GO:1905805 biolink:NamedThing excitatory synapse pruning The disaggregation of an excitatory synapse into its constituent components. tmpzr1t_l9r_go_relaxed.owl synapse elimination|synapse disassembly|synapse removal|synapse clearance tb 2017-01-11T22:03:06Z biological_process owl:Class GO:0044669 biolink:NamedThing sodium:galactoside symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sodium(out)+ galactoside(out) = sodium(in) + galactoside(in). tmpzr1t_l9r_go_relaxed.owl jl 2012-08-08T12:55:32Z molecular_function owl:Class GO:0097505 biolink:NamedThing Rad6-Rad18 complex A ubiquitin ligase complex found to be involved in post-replicative bypass of UV-damaged DNA and UV mutagenesis. In S. cerevisiae, the complex contains the ubiquitin conjugating enzyme Rad6 and Rad18, a protein containing a RING finger motif and a nucleotide binding motif. The yeast Rad6-Rad18 heterodimer has ubiquitin conjugating activity, binds single-stranded DNA, and possesses single-stranded DNA-dependent ATPase activity. tmpzr1t_l9r_go_relaxed.owl pr 2013-09-26T13:42:58Z cellular_component owl:Class GO:1905761 biolink:NamedThing SCF ubiquitin ligase complex binding Binding to a SCF ubiquitin ligase complex. tmpzr1t_l9r_go_relaxed.owl cullin-RING ligase 1 binding|SCF complex substrate recognition subunit binding|CRL1 complex binding|CDL1 complex binding|Cul1-RING ubiquitin ligase complex binding|Skp1/Cul1/F-box protein complex binding|SCF complex binding dph 2016-12-14T15:08:12Z molecular_function owl:Class GO:0102759 biolink:NamedThing campestanol hydroxylase activity Catalysis of the reaction: H+ + campestanol + O2 + NADPH <=> 6-deoxycathasterone + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-773 molecular_function owl:Class GO:0043265 biolink:NamedThing ectoplasm Granule free cytoplasm, lying immediately below the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031858 biolink:NamedThing pituitary adenylate cyclase-activating polypeptide receptor binding Binding to a pituitary adenylate cyclase-activating polypeptide receptor. tmpzr1t_l9r_go_relaxed.owl PACAP receptor binding|pituitary adenylate cyclase-activating peptide receptor ligand|pituitary adenylate cyclase activating peptide receptor binding molecular_function owl:Class GO:0098881 biolink:NamedThing exocytic insertion of neurotransmitter receptor to plasma membrane The exocytic fusion of neurotransmitter receptor-containing vesicles with plasma membrane, resulting in the integration of neurotransmitter receptors into the plasma membrane. This process includes tethering and docking steps that prepare vesicles for fusion. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor insertion biological_process owl:Class GO:0047263 biolink:NamedThing N-acylsphingosine galactosyltransferase activity Catalysis of the reaction: ceramide + UDP-galactose = D-galactosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphogalactose-acylsphingosine galactosyltransferase activity|UDP galactose-N-acylsphingosine galactosyltransferase activity|UDP-galactose:N-acylsphingosine D-galactosyltransferase activity|UDPgalactose:N-acylsphingosine D-galactosyltransferase activity MetaCyc:2.4.1.47-RXN|RHEA:13093|Reactome:R-HSA-6785933|EC:2.4.1.47 molecular_function owl:Class GO:0033561 biolink:NamedThing regulation of water loss via skin A process that modulates the rate or extent of water loss from an organism via the skin. tmpzr1t_l9r_go_relaxed.owl skin barrier function biological_process owl:Class GO:0010775 biolink:NamedThing meiotic strand invasion involved in meiotic gene conversion The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate resulting in meiotic recombination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043890 biolink:NamedThing N-acetylgalactosamine-6-sulfatase activity Catalysis of the hydrolysis of the 6-sulfate groups of the N-acetyl-D-galactosamine 6-sulfate units of chondroitin sulfate and of the D-galactose 6-sulfate units of keratan sulfate. tmpzr1t_l9r_go_relaxed.owl acetylgalactosamine 6-sulfatase activity|chondroitinsulfatase|chondroitinase|N-acetylgalactosamine-6-sulfate sulfatase activity|galactose-6-sulfate sulfatase activity|N-acetyl-D-galactosamine-6-sulfate 6-sulfohydrolase activity|N-acetylgalactosamine 6-sulfatase activity|chondroitin sulfatase EC:3.1.6.4|Reactome:R-HSA-2263490|MetaCyc:3.1.6.4-RXN|Reactome:R-HSA-1630304 molecular_function owl:Class GO:0009375 biolink:NamedThing ferredoxin hydrogenase complex An enzyme complex that catalyzes the oxidation of reduced ferredoxin. Hydrogenase contains iron-sulfur clusters, and some contain nickel; it can use molecular hydrogen for the reduction of a variety of substances. tmpzr1t_l9r_go_relaxed.owl hydrogenase complex cellular_component owl:Class GO:0051269 biolink:NamedThing alpha-keto ester reductase activity Catalysis of the reaction: alpha-keto ester + 2 H+ (from donor) = (R)-hydroxy ester. Alpha-keto esters are of the form R(1)-CO-CO-O-R(2), where the R groups may be aromatic or aliphatic. tmpzr1t_l9r_go_relaxed.owl EC:1.2.-.- molecular_function owl:Class GO:0102454 biolink:NamedThing cyanidin 3-O-galactosyltransferase activity Catalysis of the reaction: cyanidin + UDP-D-galactose = cyanidin 3-O-beta-D-galactoside betaine + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.294|MetaCyc:RXN-13960|RHEA:35631 molecular_function owl:Class GO:0018684 biolink:NamedThing 2,5-diketocamphane 1,2-monooxygenase Catalysis of the reaction: 1R,4R)-bornane-2,5-dione + FMNH2 + O2 = (1R,4R)-5-oxo-1,2-campholide + FMN + H+ + H2O. tmpzr1t_l9r_go_relaxed.owl (+)-camphor,reduced-rubredoxin:oxygen oxidoreductase (1,2-lactonizing)|camphor ketolactonase I activity|camphor 1,2-monooxygenase activity|2,5-diketocamphane lactonizing enzyme activity https://github.com/geneontology/go-ontology/issues/21412 RHEA:34415|UM-BBD_enzymeID:e0302|EC:1.14.14.108|MetaCyc:CAMPHOR-12-MONOOXYGENASE-RXN Formerly EC:1.14.15.2. molecular_function owl:Class GO:0097142 biolink:NamedThing PUMA-BCL-2 complex A heterodimeric protein complex consisting of PUMA and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:43:18Z cellular_component owl:Class GO:0004425 biolink:NamedThing indole-3-glycerol-phosphate synthase activity Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl indoleglycerol phosphate synthase activity|1-(2-carboxyphenylamino)-1-deoxy-D-ribulose-5-phosphate carboxy-lyase [cyclizing; 1-C-(3-indolyl)-glycerol-3-phosphate-forming]|indoleglycerol phosphate synthetase activity|indole-3-glycerophosphate synthase activity|1-(2-carboxyphenylamino)-1-deoxy-D-ribulose-5-phosphate carboxy-lyase (cyclizing) MetaCyc:IGPSYN-RXN|RHEA:23476|EC:4.1.1.48 molecular_function owl:Class GO:0061977 biolink:NamedThing hip joint articular cartilage development The process whose specific outcome is the progression of hip joint articular cartilage over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T20:03:22Z biological_process owl:Class GO:0062119 biolink:NamedThing LinE complex A protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins. tmpzr1t_l9r_go_relaxed.owl dph 2019-03-19T14:00:26Z cellular_component owl:Class GO:1990576 biolink:NamedThing G protein-coupled glucose receptor activity Combining with an extracellular glucose molecule and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled glucose receptor activity al 2014-12-08T03:15:12Z molecular_function owl:Class GO:0018588 biolink:NamedThing tri-n-butyltin dioxygenase activity Catalysis of the reaction: tri-n-butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyldibutyltin. tmpzr1t_l9r_go_relaxed.owl TBT dioxygenase activity UM-BBD_reactionID:r0643 molecular_function owl:Class GO:0061835 biolink:NamedThing ventral surface of cell The surface of a migrating cell that is in contact with the substratum or cell layer. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009378 biolink:NamedThing four-way junction helicase activity Unwinding a DNA helix of DNA containing four-way junctions, including Holliday junctions, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent Holliday junction helicase activity|Holliday junction helicase activity|ATP-dependent four-way junction DNA helicase activity|ATP-dependent four-way junction helicase activity pr 2013-08-07T13:36:54Z GO:1990163 molecular_function owl:Class GO:0005366 biolink:NamedThing myo-inositol:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: myo-inositol(out) + H+(out) = myo-inositol(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl hydrogen/myo-inositol transporter activity|myo-inositol:hydrogen symporter activity Reactome:R-HSA-429101|RHEA:60364 molecular_function owl:Class GO:0014732 biolink:NamedThing skeletal muscle atrophy A process, occurring in skeletal muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046966 biolink:NamedThing thyroid hormone receptor binding Binding to a thyroid hormone receptor. tmpzr1t_l9r_go_relaxed.owl ligand-dependent thyroid hormone receptor interactor activity molecular_function owl:Class GO:0036428 biolink:NamedThing adenosylcobinamide kinase (GTP-specific) activity Catalysis of the reaction: adenosylcobinamide + GTP = adenosylcobinamide phosphate + GDP + H+. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R06558|MetaCyc:RXN-14063|RHEA:15765 bf 2013-09-16T14:05:39Z molecular_function owl:Class GO:0140570 biolink:NamedThing extraction of mislocalized protein from mitochondrial outer membrane The removal of a mislocalized protein from the mitochondrial outer membrane. tmpzr1t_l9r_go_relaxed.owl extraction of mislocalized protein from outer mitochondrion membrane https://github.com/geneontology/go-ontology/issues/20237 pg 2020-12-15T07:37:12Z biological_process owl:Class GO:0050041 biolink:NamedThing lactate aldolase activity Catalysis of the reaction: (S)-lactate = acetaldehyde + formate. tmpzr1t_l9r_go_relaxed.owl (S)-lactate acetaldehyde-lyase (formate-forming)|(S)-lactate acetaldehyde-lyase activity|lactate synthase activity KEGG_REACTION:R00753|MetaCyc:LACTATE-ALDOLASE-RXN|RHEA:17909|EC:4.1.2.36 molecular_function owl:Class GO:0021974 biolink:NamedThing trigeminothalamic tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the trigeminothalamic tract, one of the major routes of nociceptive and temperature signaling from the face. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008962 biolink:NamedThing phosphatidylglycerophosphatase activity Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl PGP phosphatase activity|phosphatidylglycerol phosphate phosphatase activity|phosphatidylglycerophosphate phosphohydrolase activity|phosphatidylglycerol phosphatase activity RHEA:16725|EC:3.1.3.27|MetaCyc:PGPPHOSPHA-RXN|Reactome:R-HSA-1483197 molecular_function owl:Class GO:0006028 biolink:NamedThing galactosaminoglycan catabolic process The chemical reactions and pathways resulting in the breakdown of galactosaminoglycans, any of a group of polysaccharides that contain amino sugars derived from the galactose. tmpzr1t_l9r_go_relaxed.owl galactosaminoglycan degradation|galactosaminoglycan breakdown|galactosaminoglycan catabolism biological_process owl:Class GO:0046350 biolink:NamedThing galactosaminoglycan metabolic process The chemical reactions and pathways involving galactosaminoglycans, any one of a group of polysaccharides that contain amino sugars derived from the galactose. tmpzr1t_l9r_go_relaxed.owl galactosaminoglycan metabolism biological_process owl:Class GO:0070940 biolink:NamedThing dephosphorylation of RNA polymerase II C-terminal domain The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. tmpzr1t_l9r_go_relaxed.owl CTD domain dephosphorylation of RNA polymerase II|generation of hypophosphorylated CTD of RNA polymerase II|generation of II(A) form of RNA polymerase II mah 2009-09-29T04:34:14Z biological_process owl:Class GO:0035488 biolink:NamedThing cytosine/thymine mispair binding Binding to a double-stranded DNA region containing a C/T mispair. tmpzr1t_l9r_go_relaxed.owl T/C mispair binding|C/T mispair binding|thymine/cytosine mispair binding bf 2010-04-23T10:57:13Z molecular_function owl:Class GO:0150058 biolink:NamedThing amylin receptor complex 3 A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 3. Amylin receptor complex 3 (AMY3) also serves as a receptor for the amyloid-beta complex. Ligand binding to AMY3 results in increased cytosolic calcium ion levels and in activation on multiple intracellular signalling pathways. tmpzr1t_l9r_go_relaxed.owl AMY3 complex bc 2018-06-21T10:54:00Z cellular_component owl:Class GO:0010042 biolink:NamedThing response to manganese ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to manganese biological_process owl:Class GO:0010509 biolink:NamedThing polyamine homeostasis Any biological process involved in the maintenance of an internal steady state of a polyamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018734 biolink:NamedThing butyrolactone hydrolase activity Catalysis of the reaction: butyrolactone + H2O = 4-hydroxybutanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0016 molecular_function owl:Class GO:0008889 biolink:NamedThing glycerophosphodiester phosphodiesterase activity Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl IgD-binding protein D|glycerophosphoryl diester phosphodiesterase activity|gene hpd protein|glycerophosphodiester glycerophosphohydrolase activity MetaCyc:GLYCPDIESTER-RXN|RHEA:12969|Reactome:R-HSA-1483107|Reactome:R-HSA-1483116|EC:3.1.4.46 molecular_function owl:Class GO:0102198 biolink:NamedThing L-idonate 5-dehydrogenase activity (NAD-dependent) Catalysis of the reaction: L-idonate + NAD = 5-dehydro-D-gluconate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12107|EC:1.1.1.366|RHEA:21172 molecular_function owl:Class GO:1904858 biolink:NamedThing negative regulation of endothelial cell chemotaxis to vascular endothelial growth factor Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell chemotaxis to vascular endothelial growth factor. tmpzr1t_l9r_go_relaxed.owl down-regulation of endothelial cell chemotaxis to vascular endothelial growth factor|downregulation of endothelial cell chemotaxis to vascular endothelial growth factor|down regulation of endothelial cell chemotaxis to vascular endothelial growth factor|inhibition of endothelial cell chemotaxis to vascular endothelial growth factor rph 2015-12-16T11:47:52Z biological_process owl:Class GO:0036017 biolink:NamedThing response to erythropoietin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an erythropoietin stimulus. Erythropoietin is a glycoprotein hormone that controls erythropoiesis. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-12T10:11:04Z biological_process owl:Class GO:0019456 biolink:NamedThing L-cysteine catabolic process via cystine, using cysteine transaminase The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme cysteine transaminase (EC:2.6.1.3). tmpzr1t_l9r_go_relaxed.owl L-cysteine breakdown via cystine, using cysteine transaminase|L-cysteine degradation via cystine, using cysteine transaminase biological_process owl:Class GO:0051379 biolink:NamedThing epinephrine binding Binding to epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. tmpzr1t_l9r_go_relaxed.owl adrenaline binding molecular_function owl:Class GO:0045127 biolink:NamedThing N-acetylglucosamine kinase activity Catalysis of the reaction: N-acetyl-D-glucosamine + ATP = N-acetyl-D-glucosamine 6-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl acetylaminodeoxyglucokinase activity|ATP:2-acetylamino-2-deoxy-D-glucose 6-phosphotransferase activity|2-acetylamino-2-deoxy-D-glucose kinase activity|acetylglucosamine kinase (phosphorylating)|ATP:N-acetyl-D-glucosamine 6-phosphotransferase activity|GlcNAc kinase activity EC:2.7.1.59|MetaCyc:N-ACETYLGLUCOSAMINE-KINASE-RXN|KEGG_REACTION:R01201|Reactome:R-HSA-6803771|RHEA:17417 molecular_function owl:Class GO:0015708 biolink:NamedThing silicic acid import across plasma membrane The directed movement of silicates from outside of a cell, across the plasma membrane and into the cytosol. Silicates are the salts of silicic acids, and are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates. tmpzr1t_l9r_go_relaxed.owl silicate transport|silicon uptake|silicic acid import|silicic acid transport tb 2013-04-17T20:53:16Z GO:1902067|GO:0051207 biological_process owl:Class GO:0047460 biolink:NamedThing L-2-amino-4-chloropent-4-enoate dehydrochlorinase activity Catalysis of the reaction: L-2-amino-4-chloropent-4-enoate + H(2)O = 2-oxopent-4-enoate + chloride + H(+) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-2-amino-4-chloro-4-pentenoate dehalogenase activity|L-2-amino-4-chloropent-4-enoate chloride-lyase (adding H2O; deaminating; 2-oxopent-4-enoate-forming)|L-2-amino-4-chloropent-4-enoate chloride-lyase (deaminating) KEGG_REACTION:R02605|EC:4.5.1.4|MetaCyc:4.5.1.4-RXN|RHEA:11620 molecular_function owl:Class GO:0060490 biolink:NamedThing lateral sprouting involved in lung morphogenesis The process in which a branch forms along the side of the lung epithelial tube. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0101028 biolink:NamedThing positive regulation of liquid surface tension Any process that activates or increases the surface tension of a liquid. tmpzr1t_l9r_go_relaxed.owl positive regulation of surface tension of a liquid biological_process owl:Class GO:0050828 biolink:NamedThing regulation of liquid surface tension Any process that modulates the surface tension of a liquid. Surface tension is the property that makes a liquid behave as if it had an elastic skin on its surface at the interface with a gas or an immiscible liquid. tmpzr1t_l9r_go_relaxed.owl regulation of surface tension of a liquid|surfactant activity biological_process owl:Class GO:0009643 biolink:NamedThing photosynthetic acclimation A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. tmpzr1t_l9r_go_relaxed.owl photoacclimation|light acclimatization biological_process owl:Class GO:0102106 biolink:NamedThing curcumin synthase activity Catalysis of the reaction: feruloylacetyl-CoA + feruloyl-CoA(4-) + H2O <=> curcumin + 2 coenzyme A(4-) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11226|RHEA:34823|EC:2.3.1.217 molecular_function owl:Class GO:0102812 biolink:NamedThing 4-coumaroyl-CoA:cyanidin-3-O-beta-D-glucoside-6''-O-acyltransferase activity Catalysis of the reaction: 4-coumaryl-CoA + cyanidin 3-O-beta-D-glucoside betaine <=> cyanidin 3-(p-coumaroyl)-glucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8204 molecular_function owl:Class GO:1905748 biolink:NamedThing hard palate morphogenesis The developmental process by which a hard palate is generated and organized. tmpzr1t_l9r_go_relaxed.owl palatum durum morphogenesis pga 2016-12-09T12:22:24Z biological_process owl:Class GO:0019273 biolink:NamedThing L-alanine biosynthetic process via ornithine The chemical reactions and pathways resulting in the formation of L-alanine, via the intermediate ornithine. tmpzr1t_l9r_go_relaxed.owl L-alanine anabolism via ornithine|L-alanine formation via ornithine|L-alanine synthesis via ornithine biological_process owl:Class GO:0102966 biolink:NamedThing arachidoyl-CoA:1-dodecanol O-acyltransferase activity Catalysis of the reaction: icosanoyl-CoA + dodecan-1-ol = arachidoyl dodecanoate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9356|EC:2.3.1.75 molecular_function owl:Class GO:0044392 biolink:NamedThing peptidyl-lysine malonylation The addition of a malonyl group (CO-CH2-CO) to peptidyl-lysine to form N6-malonyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl lysine malonylation RESID:AA0568 bf 2011-12-12T09:31:42Z biological_process owl:Class GO:0099137 biolink:NamedThing altruistic, chimeric, non-reproductive fruiting body development Development of a chimeric, non-reproductive fruiting body in which cells of all genotypes have an equal chance of becoming a spore cell. tmpzr1t_l9r_go_relaxed.owl fully co-operative, chimeric, non-reproductive fruiting body development biological_process owl:Class GO:0102013 biolink:NamedThing ATPase-coupled L-glutamate tranmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + L-glutamate(out) -> ADP + phosphate + L-glutamate(in). tmpzr1t_l9r_go_relaxed.owl L-glutamate-importing ATPase activity MetaCyc:ABC-13-RXN molecular_function owl:Class GO:0015426 biolink:NamedThing ATPase-coupled polar amino acid-transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in). tmpzr1t_l9r_go_relaxed.owl polar-amino acid ABC transporter|cystine/diaminopimelate porter activity|histidine permease activity|polar-amino-acid-transporting ATPase activity|polar-amino acid-transporting ATPase activity|polar-amino acid-importing ATPase activity|polar amino acid-importing ATPase activity|ATP-dependent polar amino acid-transporter activity|glutamate/aspartate porter activity|histidine/arginine/lysine/ornithine porter activity|polar amino acid uptake transporter activity RHEA:14673|MetaCyc:3.6.3.21-RXN|EC:7.4.2.1 molecular_function owl:Class GO:0030763 biolink:NamedThing isobutyraldoxime O-methyltransferase activity Catalysis of the reaction: 2-methylpropanal oxime + S-adenosyl-L-methionine = 2-methylpropanal O-methyloxime + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl aldoxime methyltransferase activity|S-adenosyl-L-methionine:2-methylpropanal-oxime O-methyltransferase activity|aldoxime O-methyltransferase activity|S-adenosylmethionine:aldoxime O-methyltransferase activity KEGG_REACTION:R04169|RHEA:10996|EC:2.1.1.91|MetaCyc:ISOBUTYRALDOXIME-O-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:1902445 biolink:NamedThing regulation of mitochondrial membrane permeability involved in programmed necrotic cell death Any regulation of mitochondrial membrane permeability that is involved in programmed necrotic cell death. tmpzr1t_l9r_go_relaxed.owl regulation of transport across mitochondrial membrane involved in programmed necrotic cell death dph 2013-10-11T13:11:20Z biological_process owl:Class GO:0005477 biolink:NamedThing pyruvate secondary active transmembrane transporter activity Enables the transfer of pyruvate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. tmpzr1t_l9r_go_relaxed.owl pyruvate carrier activity molecular_function owl:Class GO:0030586 biolink:NamedThing [methionine synthase] reductase activity Catalysis of the reaction: [methionine synthase]-cob(II)alamin + NADPH + H+ + S-adenosyl methionine = [methionine synthase]-methylcob(I)alamin + S-adenosylhomocysteine + NADP+. tmpzr1t_l9r_go_relaxed.owl 5-methyltetrahydrofolate-homocysteine methyltransferase reductase|[methionine synthase]-cobalamin methyltransferase (cob(II)alamin reducing) activity|methionine synthase reductase activity|methionine synthase-methylcob(I)alamin,S-adenosylhomocysteine:NADP+ oxidoreductase activity|methionine synthase cob(II)alamin reductase (methylating) activity|methionine synthase-cobalamin methyltransferase (cob(II)alamin reducing) Reactome:R-HSA-3149518|MetaCyc:2.1.1.135-RXN|EC:1.16.1.8|RHEA:23908 Formerly EC:2.1.1.135. molecular_function owl:Class GO:0034783 biolink:NamedThing pivalate-CoA ligase activity Catalysis of the reaction: pivalate + H+ + HSCoA + ATP = pivalyl-CoA + PPi + AMP. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1032 molecular_function owl:Class GO:0061463 biolink:NamedThing O-acetyl-ADP-ribose deacetylase activity Catalysis of the reaction O-acetyl-ADP-ribose + H2O = ADP-ribose + acetate. tmpzr1t_l9r_go_relaxed.owl dph 2012-10-05T11:05:06Z molecular_function owl:Class GO:0033734 biolink:NamedThing (R)-benzylsuccinyl-CoA dehydrogenase activity Catalysis of the reaction: (R)-2-benzylsuccinyl-CoA + 2 electron-transferring flavoprotein = (E)-2-benzylidenesuccinyl-CoA + 2 reduced electron-transferring flavoprotein. tmpzr1t_l9r_go_relaxed.owl BbsG|(R)-benzylsuccinyl-CoA:(acceptor) oxidoreductase activity|(R)-benzylsuccinyl-CoA:acceptor oxidoreductase activity RHEA:20876|UM-BBD_reactionID:r0330|EC:1.3.8.3 molecular_function owl:Class GO:0018861 biolink:NamedThing 4-chlorobenzoate-CoA ligase activity Catalysis of the reaction: 4-chlorobenzoate + CoA + ATP = 4-chlorobenzoyl-CoA + AMP + diphosphate. This reaction requires magnesium and is part of the bacterial 2,4-dichlorobenzoate degradation pathway. tmpzr1t_l9r_go_relaxed.owl 4-chlorobenzoate:CoA ligase activity KEGG_REACTION:R03932|RHEA:23220|UM-BBD_reactionID:r0139|EC:6.2.1.33|MetaCyc:6.2.1.33-RXN molecular_function owl:Class GO:0102724 biolink:NamedThing UDP-glucose:curcumin monoglucoside glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + curcumin monoglucoside = H+ + curcumin diglucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7063 molecular_function owl:Class GO:0035756 biolink:NamedThing transepithelial migration of symbiont in host The directional movement of an organism from one side of an epithelium to the other within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl migration of symbiont within host by transepithelial trafficking|transmigration of symbiont in host|migration in host through an epithelial cell layer bf 2011-03-24T10:20:03Z biological_process owl:Class GO:1904763 biolink:NamedThing chaperone-mediated autophagy translocation complex assembly The aggregation, arrangement and bonding together of a set of components to form a chaperone-mediated autophagy translocation complex. tmpzr1t_l9r_go_relaxed.owl CMA receptor complex formation|chaperone-mediated autophagy translocation complex formation|CMA receptor complex assembly|chaperone-mediated autophagy receptor complex assembly|CMA translocation complex formation|CMA translocation complex assembly|chaperone-mediated autophagy receptor complex formation pad 2015-10-26T16:34:29Z biological_process owl:Class GO:0008854 biolink:NamedThing exodeoxyribonuclease V activity Catalysis of the exonucleolytic cleavage (in the presence of ATP) in either 5' to 3' or 3' to 5' direction to yield 5'-phosphooligonucleotides. tmpzr1t_l9r_go_relaxed.owl gene recBC endoenzyme|E. coli exonuclease V activity|exonuclease V activity|Escherichia coli exonuclease V|gene recBC DNase activity|E. coli exonuclease V|RecBC deoxyribonuclease activity|gene recBCD enzymes EC:3.1.11.5|MetaCyc:3.1.11.5-RXN molecular_function owl:Class GO:0004656 biolink:NamedThing procollagen-proline 4-dioxygenase activity Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl prolylprotocollagen dioxygenase activity|proline protocollagen hydroxylase activity|prolyl-glycyl-peptide, 2-oxoglutarate:oxygen oxidoreductase, 4-hydroxylating activity|collagen proline hydroxylase activity|peptidyl proline hydroxylase activity|protocollagen hydroxylase activity|protocollagen proline 4-hydroxylase activity|hydroxylase, collagen proline activity|proline, 2-oxoglutarate dioxygenase activity|prolyl 4-hydroxylase activity|protocollagen proline hydroxylase activity|prolyl hydroxylase activity|proline hydroxylase activity|prolylprotocollagen hydroxylase activity|procollagen-L-proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating) activity|procollagen-proline,2-oxoglutarate-4-dioxygenase activity|protocollagen proline dioxygenase activity|protocollagen prolyl hydroxylase activity|proline,2-oxoglutarate 4-dioxygenase activity KEGG_REACTION:R03219|RHEA:18945|MetaCyc:1.14.11.2-RXN|EC:1.14.11.2|Reactome:R-HSA-1650808 molecular_function owl:Class GO:0018114 biolink:NamedThing threonine racemase activity Catalysis of the reaction: L-threonine = D-threonine. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R01467|EC:5.1.1.6|MetaCyc:THREONINE-RACEMASE-RXN|RHEA:13913 molecular_function owl:Class GO:0015763 biolink:NamedThing N-acetylgalactosamine transport The directed movement of N-acetylgalactosamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. N-acetylgalactosamine, 2-acetamido-2-deoxygalactopyranose, is the n-acetyl derivative of galactosamine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010541 biolink:NamedThing acropetal auxin transport The unidirectional movement of auxin from the base towards the apex of an organ, including the shoot, leaf, primary root, or lateral root. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047869 biolink:NamedThing dimethylpropiothetin dethiomethylase activity Catalysis of the reaction: S,S-dimethyl-beta-propiothetin = acrylate + dimethyl sulfide + H(+). tmpzr1t_l9r_go_relaxed.owl desulfhydrase activity|S,S-dimethyl-beta-propiothetin dimethyl-sulfide-lyase activity|S,S-dimethyl-beta-propiothetin dimethyl-sulfide-lyase (acrylate-forming) EC:4.4.1.3|RHEA:19965|MetaCyc:DIMETHYLPROPIOTHETIN-DETHIOMETHYLASE-RXN|KEGG_REACTION:R02574 molecular_function owl:Class GO:0033926 biolink:NamedThing glycopeptide alpha-N-acetylgalactosaminidase activity Catalysis of the reaction: D-galactosyl-3-(N-acetyl-alpha-D-galactosaminyl)-L-serine + H2O = D-galactosyl-3-N-acetyl-alpha-D-galactosamine + L-serine in mucin-type glycoproteins. tmpzr1t_l9r_go_relaxed.owl endo-alpha-N-acetylgalactosaminidase activity|D-galactosyl-N-acetyl-alpha-D-galactosamine D-galactosyl-N-acetyl-galactosaminohydrolase activity|endo-alpha-acetylgalactosaminidase activity EC:3.2.1.97|MetaCyc:3.2.1.97-RXN molecular_function owl:Class GO:1903212 biolink:NamedThing protein localization to mating-type region heterochromatin A process in which a protein is transported to, or maintained in, a location within a mating-type region heterochromatin. tmpzr1t_l9r_go_relaxed.owl protein localisation to mating-type region heterochromatin|protein localization in mating-type region heterochromatin|protein localisation in mating-type region heterochromatin mah 2014-07-24T09:38:12Z biological_process owl:Class GO:0035613 biolink:NamedThing RNA stem-loop binding Binding to a stem-loop in an RNA molecule. An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. tmpzr1t_l9r_go_relaxed.owl RNA hairpin loop binding|RNA hairpin binding bf 2010-11-26T10:41:49Z molecular_function owl:Class GO:0006896 biolink:NamedThing Golgi to vacuole transport The directed movement of substances from the Golgi to the vacuole. tmpzr1t_l9r_go_relaxed.owl Golgi to vacuole vesicle-mediated transport biological_process owl:Class GO:0050068 biolink:NamedThing lysine carbamoyltransferase activity Catalysis of the reaction: L-lysine + carbamoyl phosphate = L-homocitrulline + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl carbamoyl-phosphate:L-lysine carbamoyltransferase activity|lysine transcarbamylase activity MetaCyc:LYSINE-CARBAMOYLTRANSFERASE-RXN|EC:2.1.3.8|KEGG_REACTION:R01396|RHEA:17121 molecular_function owl:Class GO:0038035 biolink:NamedThing G protein-coupled receptor signaling in absence of ligand A series of molecular signals beginning with a consequence of a G protein-coupled receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex, where the G protein-coupled receptor is not bound to an agonist. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor signaling in absence of agonist|G-protein coupled receptor signalling in absence of ligand|basal G-protein coupled receptor signaling|G-protein coupled receptor signaling in absence of ligand This term is intended for use by G protein-coupled receptors which signal at a low-level in the absence of agonist binding. bf 2011-10-26T02:31:37Z biological_process owl:Class GO:0004957 biolink:NamedThing prostaglandin E receptor activity Combining with prostaglandin E (PGE(2)) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PGE(2) receptor activity|PGE receptor activity molecular_function owl:Class GO:0002417 biolink:NamedThing B cell antigen processing and presentation mediated by B cell receptor uptake of antigen B cell antigen processing and presentation which is initiated by uptake of antigen bound to the B cell receptor. tmpzr1t_l9r_go_relaxed.owl B-cell antigen processing and presentation mediated by B cell receptor uptake of antigen|B-lymphocyte antigen processing and presentation mediated by B cell receptor uptake of antigen|B lymphocyte antigen processing and presentation mediated by B cell receptor uptake of antigen biological_process owl:Class GO:0018404 biolink:NamedThing protein-heparan sulfate linkage via heparan sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine Heparan sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues. tmpzr1t_l9r_go_relaxed.owl protein-heparan sulphate linkage via heparan sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine RESID:AA0210 biological_process owl:Class GO:0044103 biolink:NamedThing L-arabinose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: L-arabinose + NADP+ = L-arabinono-1,4-lactone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.376 jl 2009-07-09T04:00:30Z molecular_function owl:Class GO:0003844 biolink:NamedThing 1,4-alpha-glucan branching enzyme activity Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain. tmpzr1t_l9r_go_relaxed.owl enzymatic branching factor|alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase activity|starch branching enzyme|alpha-glucan-branching glycosyltransferase activity|branching enzyme activity|1,4-glucan-6-(1,4-glucano)-transferase activity|glucosan transglycosylase activity|plant branching enzyme|Q-enzyme|amylo-(1,4 to 1,6)transglucosidase activity|glycogen branching enzyme activity|branching glycosyltransferase activity|enzyme Q|1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase activity|amylo-(1,4->1,6)-transglycosylase activity|amylose isomerase activity MetaCyc:GLYCOGEN-BRANCH-RXN|Reactome:R-HSA-3322016|Reactome:R-HSA-3322005|Reactome:R-HSA-3322057|Reactome:R-HSA-3878762|EC:2.4.1.18 molecular_function owl:Class GO:0033537 biolink:NamedThing ajugose biosynthetic process using galactinol:raffinose galactosyltransferase The chemical reactions and pathways resulting in the formation of ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside, by a pathway in which galactinol:raffinose galactosyltransferase catalyzes chain elongation by transferring the alpha-galactosyl residue of galactinol to the oligosaccharide. tmpzr1t_l9r_go_relaxed.owl ajugose formation using galactinol:raffinose galactosyltransferase|ajugose biosynthesis using galactinol:raffinose galactosyltransferase|ajugose anabolism using galactinol:raffinose galactosyltransferase|ajugose synthesis using galactinol:raffinose galactosyltransferase MetaCyc:PWY-5342 biological_process owl:Class GO:0033536 biolink:NamedThing ajugose biosynthetic process The chemical reactions and pathways resulting in the formation of ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl ajugose synthesis|ajugose biosynthesis|ajugose anabolism|ajugose formation biological_process owl:Class GO:0001179 biolink:NamedThing RNA polymerase I general transcription initiation factor binding Binding to an RNA polymerase I transcription factor, a protein required to initiate or regulate transcription by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor binding krc 2011-08-12T03:03:03Z molecular_function owl:Class GO:0047254 biolink:NamedThing 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucosyltransferase activity Catalysis of the reaction: 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one + UDP-D-glucose = 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucosyltransferase activity|UDPglucose:2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucosyltransferase activity|uridine diphosphoglucose-2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-glucosyltransferase activity EC:2.4.1.202|RHEA:15541|MetaCyc:2.4.1.202-RXN molecular_function owl:Class GO:0010288 biolink:NamedThing response to lead ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047169 biolink:NamedThing galactarate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: feruloyl-CoA + galactarate = 2-(E)-O-feruloyl-D-galactarate + CoA. tmpzr1t_l9r_go_relaxed.owl galacturate hydroxycinnamoyltransferase activity|feruloyl-CoA:galactarate O-(hydroxycinnamoyl)transferase activity KEGG_REACTION:R03727|MetaCyc:2.3.1.130-RXN|EC:2.3.1.130|RHEA:12997 molecular_function owl:Class GO:0060817 biolink:NamedThing inactivation of paternal X chromosome Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes specifically on the paternal X-chromosome in the XX sex. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T10:50:20Z biological_process owl:Class GO:0038106 biolink:NamedThing choriogonadotropin hormone binding Binding to choriogonadotropin hormone, a heterodimer, with an alpha subunit identical to that of luteinizing hormone (LH), follicle-stimulating hormone (FSH) and thyroid-stimulating hormone (TSH), and a unique beta subunit. tmpzr1t_l9r_go_relaxed.owl chorionic gonadotropin binding|chorionic gonadotrophin binding bf 2012-03-08T03:58:40Z molecular_function owl:Class GO:0062074 biolink:NamedThing pollen aperture An area where exine is reduced or absent, in the pollen wall. tmpzr1t_l9r_go_relaxed.owl dph 2018-09-19T19:19:58Z cellular_component owl:Class GO:0061163 biolink:NamedThing endoplasmic reticulum polarization The endoplasmic reticulum organization process that results in the structure of the endoplasmic reticulum being oriented in the cell. Endoplasmic reticulum polarization serves as a mechanism to compartmentalize cellular activities and to establish cell polarity. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum localization involved in endoplasmic reticulum polarization at cell division site|establishment of endoplasmic reticulum localisation involved in endoplasmic reticulum polarization at cell division site|ER polarization|endoplasmic reticulum localisation involved in endoplasmic reticulum polarization at cell division site|transitional endoplasmic reticulum polarization at cell division site|ER localization involved in ER polarization at cell division site|establishment of endoplasmic reticulum localization involved in endoplasmic reticulum polarization at cell division site|maintenance of endoplasmic reticulum location involved in endoplasmic reticulum polarization at cell division site https://github.com/geneontology/go-ontology/issues/20666 dph 2010-06-25T09:51:48Z GO:0061164|GO:0061167|GO:0061166|GO:0061165 biological_process owl:Class GO:0032020 biolink:NamedThing ISG15-protein conjugation The covalent addition to a protein of ISG15, a ubiquitin-like protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120124 biolink:NamedThing membrane fusion priming complex A protein complex that primes vacuolar or vesicular membranes for fusion with other intracellular membranes, by promoting the dissociation of cis-SNARE complexes. tmpzr1t_l9r_go_relaxed.owl LMA1 complex|GATE-16 complex krc 2018-02-06T22:22:47Z cellular_component owl:Class GO:0000077 biolink:NamedThing DNA damage checkpoint signaling A signal transduction process that contributes to a DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl DNA damage response, signal transduction resulting in cell cycle arrest|DNA damage checkpoint|signal transduction involved in DNA damage checkpoint Wikipedia:DNA_damage_checkpoint|Wikipedia:Postreplication_checkpoint mah 2010-12-08T04:18:11Z GO:0072422 biological_process owl:Class GO:0021960 biolink:NamedThing anterior commissure morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in one half of the cerebral cortex towards target cells in the contralateral half. This axonal process is a member of those that make up the anterior commissure, a small midline fiber tract that lies at the anterior end of the corpus callosum. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000223 biolink:NamedThing plasma membrane proton-transporting V-type ATPase, V1 domain The V1 domain of a proton-transporting V-type ATPase found in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane hydrogen ion-transporting ATPase V1 domain cellular_component owl:Class GO:0007358 biolink:NamedThing establishment of central gap gene boundaries Specification of the borders of central gap gene expression mediated largely by the effects of other gap genes; in insects this is exemplified by knirps repression of Kruppel. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019696 biolink:NamedThing toluene oxidation via toluene-cis-1,2-dihydrodiol The degradation of toluene to form pyruvate and acetaldehyde; the first step in the pathway is the oxidation of toluene to form toluene-cis-1,2-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:TOLUENE-DEG-DIOL-PWY biological_process owl:Class GO:0035154 biolink:NamedThing terminal cell fate specification, open tracheal system The process in which a cell in an open tracheal system becomes capable of differentiating autonomously into a terminal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. Terminal cells send long and bifurcated hollow branches toward target tissues to allow oxygen exchange. tmpzr1t_l9r_go_relaxed.owl terminal cell fate specification biological_process owl:Class GO:0097173 biolink:NamedThing N-acetylmuramic acid catabolic process The chemical reactions and pathways resulting in the breakdown of N-acetylmuramic acid (MurNAc), a monosaccharide derivative of N-acetylglucosamine. tmpzr1t_l9r_go_relaxed.owl N-acetylmuramate catabolism|N-acetylmuramic acid breakdown|N-acetylmuramate catabolic process|N-acetylmuramate breakdown|N-acetylmuramate degradation|N-acetylmuramic acid degradation|N-acetylmuramic acid catabolism pr 2011-10-07T12:48:47Z biological_process owl:Class GO:0002058 biolink:NamedThing uracil binding Binding to uracil. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061516 biolink:NamedThing monocyte proliferation The expansion of a monocyte population by cell division. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:14:24Z biological_process owl:Class GO:0071903 biolink:NamedThing protein N-linked N-acetylglucosaminylation via asparagine A process of protein N-linked glycosylation via asparagine in which N-acetylglucosamine is added to the N4 of asparagine, forming an (S)-2-amino-4-(2-acetamido-2-deoxy-beta-D-glucopyranosyl)amino-4-oxobutanoic acid residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked N-acetylglucosaminylation via asparagine RESID:AA0151 mah 2010-09-15T03:49:16Z biological_process owl:Class GO:0022882 biolink:NamedThing protein-N(PI)-phosphohistidine-beta-glucoside phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + beta-glucoside(out) = protein histidine + beta-glucoside phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl beta-glucoside PTS transporter activity molecular_function owl:Class GO:0008142 biolink:NamedThing oxysterol binding Binding to oxysterol, an oxidized form of cholesterol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061142 biolink:NamedThing mesothelial-mesenchymal cell signaling involved in early lung development Any process that mediates the transfer of information from a mesothelial cell to an epithelial cell and contributes to the development of the lung. tmpzr1t_l9r_go_relaxed.owl mesothelial-mesenchymal cell signalling involved in early lung development dph 2010-05-25T09:35:32Z biological_process owl:Class GO:0046695 biolink:NamedThing SLIK (SAGA-like) complex A SAGA-type histone acetyltransferase complex that contains a smaller form of Spt7 (lacking the SPT8 binding region) than the fungal SAGA complex, and consequently lacks Spt8. The complex is involved in the yeast retrograde response pathway, which is important for gene expression changes during mitochondrial dysfunction. tmpzr1t_l9r_go_relaxed.owl SAGA (alt) complex|SALSA complex|SLIK/SALSA complex See also the cellular component term 'SAGA complex ; GO:0000124'. cellular_component owl:Class GO:0070461 biolink:NamedThing SAGA-type complex A histone acetyltransferase complex that acetylates nucleosomal histones H2B, H3, or H4 and is required for the expression of a subset of Pol II-transcribed genes. This complex includes the acetyltransferases GCN5/KAT2A or PCAF/KAT2B, several proteins of the ADA, SGF and SPT families, and several TBP-associate proteins (TAFs). tmpzr1t_l9r_go_relaxed.owl SAGA family complex cellular_component owl:Class GO:0018257 biolink:NamedThing peptidyl-lysine formylation The modification of peptidyl-lysine to form peptidyl-N6-formyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0211 biological_process owl:Class GO:0050883 biolink:NamedThing musculoskeletal movement, spinal reflex action Involuntary movement caused by the application of a stimulus to an organism and a subsequent movement. The signal processing of this movement takes place in the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903728 biolink:NamedThing luteal cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a luteal cell. Large luteal cells develop from granulosa cells. Small luteal cells develop from theca cells. tmpzr1t_l9r_go_relaxed.owl lutein cell differentiation cjm 2014-12-10T01:36:43Z biological_process owl:Class GO:0042601 biolink:NamedThing endospore-forming forespore Portion of the cell formed during the process of bacterial sporulation that will ultimately become the core of the endospore. An endospore is a type of dormant cell that is resistant to adverse conditions. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010327 biolink:NamedThing acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity Catalysis of the reaction: acetyl-CoA + (Z)-3-hexen-1-ol = CoA + (Z)-3-hexen-1-yl acetate. tmpzr1t_l9r_go_relaxed.owl hexenol acetyltransferase molecular_function owl:Class GO:0036298 biolink:NamedThing recombinational interstrand cross-link repair Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous DNA region. tmpzr1t_l9r_go_relaxed.owl recombination-dependent interstrand cross-link repair bf 2012-08-07T11:11:59Z biological_process owl:Class GO:0036297 biolink:NamedThing interstrand cross-link repair Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA. DNA interstrand crosslinks occur when both strands of duplex DNA are covalently tethered together (e.g. by an exogenous or endogenous agent), thus preventing the strand unwinding necessary for essential DNA functions such as transcription and replication. tmpzr1t_l9r_go_relaxed.owl ICL repair bf 2012-08-07T11:05:19Z biological_process owl:Class GO:0042901 biolink:NamedThing arabinan transmembrane transporter activity Enables the transfer of an arabinan, a polysaccharide composed of arabinose residues, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008066 biolink:NamedThing glutamate receptor activity Combining with glutamate and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070912 biolink:NamedThing Ddb1-Ckn1 complex A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Ckn1 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-09T03:41:04Z cellular_component owl:Class GO:0047295 biolink:NamedThing geranylgeranylglycerol-phosphate geranylgeranyltransferase activity Catalysis of the reaction: sn-3-O-(geranylgeranyl)glycerol 1-phosphate + all-trans-geranylgeranyl diphosphate = 2,3-di-O-(geranylgeranyl)glycerol 1-phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyloxyglycerol phosphate geranylgeranyltransferase activity|geranylgeranyltransferase II|geranylgeranyl diphosphate:sn-3-O-(geranylgeranyl)glycerol 1-phosphate geranylgeranyltransferase activity EC:2.5.1.42|MetaCyc:2.5.1.42-RXN|KEGG_REACTION:R04520|RHEA:18109 molecular_function owl:Class GO:0033413 biolink:NamedThing UGU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UGU codon. tmpzr1t_l9r_go_relaxed.owl TGT codon-amino acid adaptor activity|cysteine tRNA Note that in the standard genetic code, TGT codes for cysteine. molecular_function owl:Class GO:0060208 biolink:NamedThing proestrus The estrous cycle phase in which there is heightened follicular activity. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0050384 biolink:NamedThing urate-ribonucleotide phosphorylase activity Catalysis of the reaction: 3-(beta-D-ribofuranosyl)uric acid + phosphate = alpha-D-ribose 1-phosphate + H(+) + urate. tmpzr1t_l9r_go_relaxed.owl urate-ribonucleotide:phosphate alpha-D-ribosyltransferase activity|urate-ribonucleotide:phosphate D-ribosyltransferase activity|UAR phosphorylase activity RHEA:13909|KEGG_REACTION:R02646|MetaCyc:URATE-RIBONUCLEOTIDE-PHOSPHORYLASE-RXN|EC:2.4.2.16 molecular_function owl:Class GO:0042768 biolink:NamedThing ecdysteroid 2-hydroxylase activity Catalysis of the hydroxylation of an ecdysteroid at carbon position 2. tmpzr1t_l9r_go_relaxed.owl Note that in the ecdysteroidogenic pathway, this activity catalyzes the conversion of 2-deoxyecdysone to ecdysone. It can also catalyze the conversion of 2,22-dideoxyecdysone (ketotriol) to 22-deoxyecdysone. molecular_function owl:Class GO:0099622 biolink:NamedThing cardiac muscle cell membrane repolarization The process in which ions are transported across the plasma membrane of a cardiac muscle cell such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055087 biolink:NamedThing Ski complex A protein complex that regulates RNA degradation by the exosome complex. In Saccharomyces the complex has a heterotetrameric stoichiometry consisting of one copy each of Ski2p and Ski3 and two copies of Ski8p. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Ski_complex cellular_component owl:Class GO:0061201 biolink:NamedThing clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen The volume enclosed by the membrane of the clathrin-sculpted gamma-aminobutyric acid transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted GABA transport vesicle lumen|clathrin sculpted gamma-aminobutyric acid transport vesicle lumen dph 2010-07-29T10:45:05Z cellular_component owl:Class GO:0033608 biolink:NamedThing formyl-CoA transferase activity Catalysis of the reaction: formyl-CoA + oxalate = formate + oxalyl-CoA. tmpzr1t_l9r_go_relaxed.owl formyl-CoA:oxalate CoA-transferase activity|formyl-coenzyme A transferase activity|formyl-CoA oxalate CoA-transferase activity MetaCyc:RXN0-1382|EC:2.8.3.16|KEGG_REACTION:R07290|RHEA:16545 molecular_function owl:Class GO:0047365 biolink:NamedThing quercetin-3-sulfate 3'-sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + quercetin 3-sulfate = adenosine 3',5'-diphosphate + H(+) + quercetin 3,3'-disulfate. tmpzr1t_l9r_go_relaxed.owl flavonol 3'-sulfotransferase activity|quercetin-3-sulphate 3'-sulphotransferase activity|3'-phosphoadenylyl-sulfate:quercetin-3-sulfate 3'-sulfotransferase activity|PAPS:flavonol 3-sulfate 3'-sulfotransferase activity|3'-sulfotransferase activity KEGG_REACTION:R02632|EC:2.8.2.26|RHEA:22504|MetaCyc:2.8.2.26-RXN molecular_function owl:Class GO:1902783 biolink:NamedThing cellular response to decane Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a decane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T12:50:14Z biological_process owl:Class GO:0047104 biolink:NamedThing hexadecanal dehydrogenase (acylating) activity Catalysis of the reaction: CoA + NAD(+) + palmitaldehyde = H(+) + NADH + palmitoyl-CoA. tmpzr1t_l9r_go_relaxed.owl fatty acyl-CoA reductase activity|hexadecanal:NAD+ oxidoreductase (CoA-acylating) MetaCyc:1.2.1.42-RXN|UM-BBD_reactionID:r1374|KEGG_REACTION:R01277|RHEA:19705|EC:1.2.1.42 molecular_function owl:Class GO:0038139 biolink:NamedThing ERBB4-EGFR complex A heterodimeric complex between the tyrosine kinase receptors ERBB4 (also called HER4) and epidermal growth factor receptor (EGFR/ERBB1). tmpzr1t_l9r_go_relaxed.owl ERBB4:EGFR heterodimer|EGFR-ERBB4 complex bf 2012-03-30T01:59:41Z cellular_component owl:Class GO:0002945 biolink:NamedThing cyclin K-CDK13 complex A protein complex consisting of cyclin Kand cyclin-dependent kinase 13 (CDK13). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl CycK/Cdk13 complex hjd 2012-12-05T16:13:28Z cellular_component owl:Class GO:0140685 biolink:NamedThing histone H3-di/monomethyl-lysine-9 FAD-dependent demethylase activity Catalysis of the removal of a methyl group from a di- or a monomethyl-lysine residue at position 9 of the histone H3 protein. This is a flavin adenine dinucleotide (FAD)-dependent amine oxidation reaction. tmpzr1t_l9r_go_relaxed.owl histone H3K9me demethylase activity|histone H3K9me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 pg 2021-07-09T07:18:00Z molecular_function owl:Class GO:0009906 biolink:NamedThing response to photoperiod, blue light Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a blue light photoperiod stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045486 biolink:NamedThing naringenin 3-dioxygenase activity Catalysis of the reaction: naringenin + 2-oxoglutarate + O2 = dihydrokaempferol + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl flavanone 3beta-hydroxylase activity|(2S)-flavanone 3-hydroxylase activity|flavanone 3-beta-hydroxylase activity|flavanone 3-dioxygenase activity|flavanone 3-hydroxylase activity|naringenin 3-hydroxylase activity|flavanone,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)|naringenin,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity|flavanone synthase I activity MetaCyc:NARINGENIN-3-DIOXYGENASE-RXN|EC:1.14.11.9|RHEA:18621 molecular_function owl:Class GO:0043965 biolink:NamedThing suppression by symbiont of host adenylate cyclase-mediated signal transduction Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by symbiont of host adenylate cyclase-mediated signal transduction biological_process owl:Class GO:0019137 biolink:NamedThing thioglucosidase activity Catalysis of the reaction: a thioglucoside + H2O = a thiol + a sugar. tmpzr1t_l9r_go_relaxed.owl myrosinase activity|sinigrase activity|thioglucoside glucohydrolase activity|sinigrinase activity MetaCyc:RXN-9946|EC:3.2.1.147 molecular_function owl:Class GO:0000908 biolink:NamedThing taurine dioxygenase activity Catalysis of the reaction: 2-oxoglutarate + O(2) + taurine = aminoacetaldehyde + CO(2) + succinate + sulfite. tmpzr1t_l9r_go_relaxed.owl 2-aminoethanesulfonate dioxygenase activity|alpha-ketoglutarate-dependent taurine dioxygenase activity|taurine, 2-oxoglutarate:O2 oxidoreductase (sulfite-forming) RHEA:15909|EC:1.14.11.17|MetaCyc:RXN0-299|KEGG_REACTION:R05320 molecular_function owl:Class GO:0097620 biolink:NamedThing (R)-mandelate dehydrogenase activity Catalysis of the reaction: (R)-2-hydroxy-2-phenylacetate + acceptor = phenylglyoxylate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl D-mandelate dehydrogenase activity RHEA:43112 In the yeast Rhodotorula graminis, (R)-mandelate dehydrogenase is the first enzyme of the mandelate pathway, and catalyzes the NAD-dependent oxidation of (R)-mandelate to phenylglyoxylate. pr 2014-07-30T09:53:23Z molecular_function owl:Class GO:0003259 biolink:NamedThing cardioblast anterior-lateral migration The orderly movement of a cardioblast toward the head and laterally to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T01:17:28Z biological_process owl:Class GO:0003260 biolink:NamedThing cardioblast migration The orderly movement of a cardiac progenitor cell to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T01:52:25Z biological_process owl:Class GO:0140384 biolink:NamedThing metacyclogenesis The morphological, biochemical and genetic changes that induce the differentiation of non-pathogenic parasites into pathogenic metacyclic parasites in the Trypanosomatidae species. The pathogenic parasites are known as metacyclic trypomastigotes in Trypanosoma and metacyclic promastigotes in Leishmania. tmpzr1t_l9r_go_relaxed.owl pg 2019-11-20T13:25:55Z biological_process owl:Class GO:0052775 biolink:NamedThing endo-1,3-alpha-L-rhamnosidase activity Catalysis of the reaction: R1-L-rhamnose-(1->3)-alpha-L-rhamnose-R2 + H2O = R1-L-rhamnose + L-rhamnose-R2. This reaction is the hydrolysis of an alpha-(1->3) linkage between two rhamnose residues in a polysaccharide chain. tmpzr1t_l9r_go_relaxed.owl endo-(1,3)-alpha-L-rhamnosidase activity|endorhamnosidase activity|endo-(1->3)-alpha-L-rhamnosidase activity ai 2011-10-05T03:30:33Z molecular_function owl:Class GO:0004639 biolink:NamedThing phosphoribosylaminoimidazolesuccinocarboxamide synthase activity Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate + ATP = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoribosylaminoimidazolesuccinocarboxamide synthetase activity|phosphoribosylaminoimidazole-succinocarboxamide synthase activity|SAICARs activity|phosphoribosylaminoimidazole-succinocarboxamide synthetase activity|4-[(N-succinylamino)carbonyl]-5-aminoimidazole ribonucleotide synthetase activity|4-(N-succinocarboxamide)-5-aminoimidazole synthetase activity|PurC|SAICAR synthase activity|4-((N-succinylamino)carbonyl)-5-aminoimidazole ribonucleotide synthetase activity|5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate:L-aspartate ligase (ADP-forming)|SAICAR synthetase activity|5-aminoimidazole-4-N-succinocarboxamide ribonucleotide synthetase activity Reactome:R-HSA-73805|RHEA:22628|MetaCyc:SAICARSYN-RXN|KEGG_REACTION:R04591|EC:6.3.2.6 molecular_function owl:Class GO:0018238 biolink:NamedThing peptidyl-lysine carboxyethylation The modification of peptidyl-lysine to form peptidyl-N6-1-carboxyethyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl protein amino acid carboxyethylation RESID:AA0115 GO:0018239 biological_process owl:Class GO:0071945 biolink:NamedThing regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed A process that modulates flagellum-dependent motility in bacteria by modulating the speed or direction of rotation of a rotary flagellar motor, mediated by interactions between the braking protein. tmpzr1t_l9r_go_relaxed.owl regulation of bacterial-type flagellum cell motility by regulation of motor speed|regulation of flagellar cell motility by regulation of motor speed|regulation of bacterial-type flagellar cell motility by regulation of motor speed mah 2010-10-05T04:10:27Z biological_process owl:Class GO:0019194 biolink:NamedThing sorbose transmembrane transporter activity Enables the transfer of sorbose from one side of a membrane to the other. Sorbose is the ketohexose xylo-2-hexulose; L-sorbose is formed by bacterial oxidation of sorbitol. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid. tmpzr1t_l9r_go_relaxed.owl sorbose porter activity GO:0019193 molecular_function owl:Class GO:0050217 biolink:NamedThing propioin synthase activity Catalysis of the reaction: 4-hydroxyhexan-3-one = 2 propanal. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-3-hexanone propanal-lyase activity|4-hydroxy-3-hexanone aldolase activity|4-hydroxy-3-hexanone propanal-lyase (propanal-forming) MetaCyc:PROPIOIN-SYNTHASE-RXN|KEGG_REACTION:R00038|EC:4.1.2.35|RHEA:11100 molecular_function owl:Class GO:0021975 biolink:NamedThing pons reticulospinal tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090471 biolink:NamedThing 9,15,9'-tri-cis-zeta-carotene isomerase activity Catalysis of the reaction: 9,15,9'-tricis-zeta-carotene = 9,9'-dicis-zeta-carotene. tmpzr1t_l9r_go_relaxed.owl 9,15,9'-tricis-zeta-carotene cis-trans-isomerase tb 2012-09-24T16:29:49Z molecular_function owl:Class GO:0061470 biolink:NamedThing T follicular helper cell differentiation The process in which a relatively unspecialized T cell acquires specialized features of a mature T follicular helper cell. tmpzr1t_l9r_go_relaxed.owl T-helper follicular cell differentiation dph 2012-11-02T09:01:48Z biological_process owl:Class GO:0033513 biolink:NamedThing L-lysine catabolic process to acetyl-CoA via 5-aminopentanamide The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate 5-aminopentanamide. tmpzr1t_l9r_go_relaxed.owl L-lysine breakdown to acetyl-CoA via 5-aminopentanamide|L-lysine degradation to acetyl-CoA via 5-aminopentanamide MetaCyc:PWY-5280 biological_process owl:Class GO:0061384 biolink:NamedThing heart trabecula morphogenesis The process of shaping a trabecula in the heart. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue. tmpzr1t_l9r_go_relaxed.owl dph 2010-12-02T08:54:20Z biological_process owl:Class GO:0030833 biolink:NamedThing regulation of actin filament polymerization Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. tmpzr1t_l9r_go_relaxed.owl regulation of actin polymerization biological_process owl:Class GO:1990142 biolink:NamedThing envenomation resulting in hemolysis in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with hemolysis in the bitten organism. tmpzr1t_l9r_go_relaxed.owl sp 2013-07-18T10:46:03Z biological_process owl:Class GO:0044649 biolink:NamedThing envenomation resulting in cytolysis in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with cytolysis in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-11T02:13:38Z biological_process owl:Class GO:0061759 biolink:NamedThing alpha-ketoglutarate reductase activity Catalysis of the reaction: 2-oxoglutarate + reduced acceptor = (S)-2-hydroxyglutarate + acceptor. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate reductase activity|2-hydroxyglutarate dehydrogenase activity, reverse reaction|2-ketoglutarate reductase activity|D-2HG reductase activity RHEA:21254 dph 2016-03-07T08:38:57Z molecular_function owl:Class GO:1904929 biolink:NamedThing coreceptor activity involved in Wnt signaling pathway, planar cell polarity pathway Any coreceptor activity that is involved in Wnt signaling pathway, planar cell polarity pathway. tmpzr1t_l9r_go_relaxed.owl Wnt co-receptor activity, non-canonical signaling|coreceptor activity involved in Wnt receptor signaling pathway, planar cell polarity pathway|coreceptor, soluble ligand activity involved in Wnt signaling pathway, planar cell polarity pathway|coreceptor, insoluble ligand activity involved in Wnt-JNK signaling pathway|coreceptor, insoluble ligand activity involved in Wnt receptor signaling pathway, planar cell polarity pathway|coreceptor activity involved in Wnt-PCP signaling pathway|coreceptor, insoluble ligand activity involved in planar cell polarity pathway|coreceptor, soluble ligand activity involved in planar cell polarity pathway|coreceptor, soluble ligand activity involved in PCP pathway|coreceptor, insoluble ligand activity involved in Wnt-activated signaling pathway, planar cell polarity pathway|coreceptor, insoluble ligand activity involved in Wnt receptor signalling pathway, planar cell polarity pathway|coreceptor, soluble ligand activity involved in non-canonical Wnt signaling pathway|coreceptor activity involved in Wnt-JNK signaling pathway|coreceptor, soluble ligand activity involved in Wnt-PCP signaling pathway|coreceptor, soluble ligand activity involved in Wnt-activated signaling pathway, planar cell polarity pathway|coreceptor, insoluble ligand activity involved in non-canonical Wnt signaling pathway|coreceptor activity involved in non-canonical Wnt signaling pathway|Wnt/PCP co-receptor activity|coreceptor, soluble ligand activity involved in Wnt receptor signaling pathway, planar cell polarity pathway|coreceptor activity involved in Wnt-activated signaling pathway, planar cell polarity pathway|coreceptor activity involved in PCP pathway|coreceptor, insoluble ligand activity involved in Wnt-PCP signaling pathway|coreceptor, soluble ligand activity involved in Wnt receptor signalling pathway, planar cell polarity pathway|coreceptor activity involved in Wnt receptor signalling pathway, planar cell polarity pathway|coreceptor, insoluble ligand activity involved in PCP pathway|coreceptor, insoluble ligand activity involved in Wnt signaling pathway, planar cell polarity pathway|coreceptor activity involved in planar cell polarity pathway|coreceptor, soluble ligand activity involved in Wnt-JNK signaling pathway|Wnt co-receptor, non-canonical pathway bf 2016-01-28T15:15:01Z molecular_function owl:Class GO:0002656 biolink:NamedThing negative regulation of tolerance induction to nonself antigen Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction to nonself antigen. tmpzr1t_l9r_go_relaxed.owl down regulation of tolerance induction to nonself antigen|inhibition of tolerance induction to nonself antigen|downregulation of tolerance induction to nonself antigen|down-regulation of tolerance induction to nonself antigen biological_process owl:Class GO:0018123 biolink:NamedThing peptidyl-cysteine ADP-ribosylation The transfer, from NAD, of ADP-ribose to peptidyl-cysteine to form peptidyl-S-(ADP-ribosyl)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0169 biological_process owl:Class GO:0045902 biolink:NamedThing negative regulation of translational fidelity Any process that decreases the ability of the translational apparatus to interpret the genetic code. tmpzr1t_l9r_go_relaxed.owl down regulation of translational fidelity|downregulation of translational fidelity|down-regulation of translational fidelity|inhibition of translational fidelity biological_process owl:Class GO:0047522 biolink:NamedThing 15-oxoprostaglandin 13-oxidase activity Catalysis of the reaction: (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprostanoate + NAD(P)+ -> (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprosta-13-enoate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl (5Z)-(15S)-11alpha-hydroxy-9,15-dioxoprostanoate:NAD(P)+ delta13-oxidoreductase activity KEGG_REACTION:R04557|MetaCyc:15-OXOPROSTAGLANDIN-13-REDUCTASE-RXN|EC:1.3.1.48|KEGG_REACTION:R04556 Note that this is the reverse of the reaction described in '13-prostaglandin reductase activity ; GO:0036132'. molecular_function owl:Class GO:0036331 biolink:NamedThing avascular cornea development in camera-type eye The progression of an avascular cornea over time, from its formation to the mature structure. Corneal avascularity (the absence of blood vessels in the cornea) is required for optical clarity and optimal vision. Avascular corneas are present in most animals, except Manatees. tmpzr1t_l9r_go_relaxed.owl avascular cornea development bf 2012-09-05T09:07:14Z biological_process owl:Class GO:0071290 biolink:NamedThing cellular response to platinum ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platinum stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to platinum mah 2009-12-10T04:08:06Z biological_process owl:Class GO:0047714 biolink:NamedThing galactolipase activity Catalysis of the reaction: 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + 2 H2O = 3-beta-D-galactosyl-sn-glycerol + 2 carboxylates. tmpzr1t_l9r_go_relaxed.owl galactolipid acylhydrolase activity|1,2-diacyl-3-beta-D-galactosyl-sn-glycerol acylhydrolase activity|galactolipid lipase activity|polygalactolipase activity RHEA:13189|MetaCyc:GALACTOLIPASE-RXN|EC:3.1.1.26 molecular_function owl:Class GO:0071757 biolink:NamedThing hexameric IgM immunoglobulin complex A circulating form of IgM consisting of a hexamer of IgM core units with a single J chain polypeptide. tmpzr1t_l9r_go_relaxed.owl hexameric IgM antibody Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0071952 biolink:NamedThing conversion of O-phosphoseryl-tRNA to cysteinyl-tRNA The modification process that results in the conversion of O-phosphoserine charged on a tRNA(Cys) to cysteinyl-tRNA. tmpzr1t_l9r_go_relaxed.owl Note that this process has been observed in some archaeal and bacterial species. mah 2010-10-08T12:02:00Z biological_process owl:Class GO:0031815 biolink:NamedThing P2Y5 nucleotide receptor binding Binding to a P2Y5 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y5 nucleotide receptor ligand molecular_function owl:Class GO:1905190 biolink:NamedThing negative regulation of metaphase/anaphase transition of meiosis II Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of meiosis II. tmpzr1t_l9r_go_relaxed.owl negative regulation of meiosis II metaphase/anaphase transition vw 2016-05-10T16:46:57Z biological_process owl:Class GO:2000436 biolink:NamedThing positive regulation of protein neddylation Any process that activates or increases the frequency, rate or extent of protein neddylation. tmpzr1t_l9r_go_relaxed.owl positive regulation of RUB1-protein conjugation vw 2011-03-03T02:06:19Z biological_process owl:Class GO:0102726 biolink:NamedThing DIMBOA glucoside beta-D-glucosidase activity Catalysis of the reaction: (2R)-DIMBOA glucoside + H2O = H+ + DIMBOA + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl RHEA:33975|MetaCyc:RXN-7082|EC:3.2.1.182 molecular_function owl:Class GO:0044074 biolink:NamedThing negative regulation by symbiont of host translation The process in which a symbiont organism stops, prevents, or reduces the frequency, rate or extent of translation, the chemical reactions and pathways resulting in the formation of a protein, in its host organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of host translation by symbiont biological_process owl:Class GO:0120170 biolink:NamedThing intraciliary transport particle B binding Binding to an intraciliary transport particle B (IFT B) complex. tmpzr1t_l9r_go_relaxed.owl IFT B complex binding|intraciliary transport complex B binding|intraflagellar transport complex B binding|intraflagellar transport particle B binding krc 2018-05-11T22:28:11Z molecular_function owl:Class GO:0060559 biolink:NamedThing positive regulation of calcidiol 1-monooxygenase activity Any process that increases the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is the catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl dph 2009-04-13T02:57:28Z biological_process owl:Class GO:0047923 biolink:NamedThing gentisate decarboxylase activity Catalysis of the reaction: 2,5-dihydroxybenzoate + H(+) = CO(2) + hydroquinone. tmpzr1t_l9r_go_relaxed.owl 2,5-dihydroxybenzoate decarboxylase activity|gentisate carboxy-lyase activity|2,5-dihydroxybenzoate carboxy-lyase (hydroquinone-forming) KEGG_REACTION:R02489|RHEA:21312|EC:4.1.1.62|MetaCyc:GENTISATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:1903241 biolink:NamedThing U2-type prespliceosome assembly The aggregation, arrangement and bonding together of a set of components to form an U2-type prespliceosome. tmpzr1t_l9r_go_relaxed.owl major prespliceosome assembly|yeast U2-type spliceosomal complex B assembly|GT-AG prespliceosome formation|mammalian U2-type spliceosomal complex A formation|U2-type prespliceosome formation|mammalian U2-type spliceosomal complex A assembly|GT-AG prespliceosome assembly|yeast U2-type spliceosomal complex B formation|major prespliceosome formation mah 2014-08-01T14:33:45Z biological_process owl:Class GO:0047939 biolink:NamedThing L-glucuronate reductase activity Catalysis of the reaction: L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl glucuronate reductase activity|D-glucuronate reductase activity|D-glucuronate dehydrogenase activity|NADP-L-gulonate dehydrogenase activity|TPN-L-gulonate dehydrogenase activity|glucuronate dehydrogenase activity|aldehyde reductase II activity KEGG_REACTION:R01481|Reactome:R-HSA-5661256|EC:1.1.1.19|MetaCyc:GLUCURONATE-REDUCTASE-RXN|RHEA:14909 molecular_function owl:Class GO:0008689 biolink:NamedThing 3-demethylubiquinone-9 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinone-9 = S-adenosyl-L-homocysteine + ubiquinone-9. tmpzr1t_l9r_go_relaxed.owl OMHMB-methyltransferase activity|S-adenosyl-L-methionine:2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone 3-O-methyltransferase activity|5-demethylubiquinone-9 methyltransferase activity|S-adenosyl-L-methionine:2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone-O-methyltransferase activity EC:2.1.1.64|RHEA:17049|MetaCyc:DHHB-METHYLTRANSFER-RXN molecular_function owl:Class GO:2000347 biolink:NamedThing positive regulation of hepatocyte proliferation Any process that activates or increases the frequency, rate or extent of hepatocyte proliferation. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-03T10:27:24Z biological_process owl:Class GO:0008675 biolink:NamedThing 2-dehydro-3-deoxy-phosphogluconate aldolase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate 6-phosphate = pyruvate + D-glyceraldehyde 3-phosphate. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxy-6-phosphogluconic aldolase activity|6-phospho-2-keto-3-deoxygluconate aldolase activity|2-dehydro-3-deoxy-D-gluconate-6-phosphate D-glyceraldehyde-3-phosphate-lyase activity|2-dehydro-3-deoxy-D-gluconate-6-phosphate D-glyceraldehyde-3-phosphate-lyase (pyruvate-forming)|phospho-2-keto-3-deoxygluconate aldolase activity|2-keto-3-deoxygluconate-6-phosphate aldolase activity|KDPG-aldolase activity|KDPG aldolase activity|phospho-2-keto-3-deoxygluconic aldolase activity|ODPG aldolase activity|2-keto-3-deoxy-6-phosphogluconate aldolase activity|2-keto-3-deoxygluconate-6-P-aldolase activity|2-oxo-3-deoxy-6-phosphogluconate aldolase activity|phospho-2-dehydro-3-deoxygluconate aldolase activity EC:4.1.2.14|MetaCyc:KDPGALDOL-RXN|RHEA:17089 molecular_function owl:Class GO:0047339 biolink:NamedThing nucleoside-triphosphate-hexose-1-phosphate nucleotidyltransferase activity Catalysis of the reaction: hexose 1-phosphate + nucleoside triphosphate = NDP-hexose + diphosphate. tmpzr1t_l9r_go_relaxed.owl hexose-1-phosphate guanylyltransferase activity|NDP-hexose pyrophosphorylase activity|hexose 1-phosphate guanylyltransferase activity|nucleoside-triphosphate-aldose-1-phosphate nucleotidyltransferase activity|nucleoside diphosphohexose pyrophosphorylase activity|NTP:hexose-1-phosphate nucleotidyltransferase activity|NDP-hexose diphosphorylase activity|NDP hexose pyrophosphorylase activity|hexose nucleotidylating enzyme activity|GDP hexose pyrophosphorylase activity|hexose 1-phosphate nucleotidyltransferase activity|NTP:alpha-D-aldose-1-phosphate nucleotidyltransferase activity|guanosine diphosphohexose pyrophosphorylase activity|GTP:hexose-1-phosphate guanylyltransferase activity|GTP:alpha-D-hexose-1-phosphate guanylyltransferase activity MetaCyc:2.7.7.28-RXN|EC:2.7.7.28 GO:0047340 molecular_function owl:Class GO:1900137 biolink:NamedThing negative regulation of chemokine activity Any process that stops, prevents or reduces the frequency, rate or extent of chemokine activity. tmpzr1t_l9r_go_relaxed.owl downregulation of chemokine activity|down regulation of chemokine activity|down-regulation of chemokine activity|inhibition of chemokine activity bf 2012-02-28T01:36:33Z biological_process owl:Class GO:0016005 biolink:NamedThing phospholipase A2 activator activity Increases the activity of the enzyme phospholipase A2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051509 biolink:NamedThing tomatidine UDP-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + tomatidine = UDP + O-glucosyl-tomatidine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047433 biolink:NamedThing branched-chain-2-oxoacid decarboxylase activity Catalysis of the reaction: (S)-3-methyl-2-oxopentanoate + H(+) = 2-methylbutanal + CO(2). tmpzr1t_l9r_go_relaxed.owl branched-chain alpha-keto acid decarboxylase activity|(3S)-3-methyl-2-oxopentanoate carboxy-lyase activity|BCKA|branched-chain oxo acid decarboxylase activity|branched-chain keto acid decarboxylase activity|(3S)-3-methyl-2-oxopentanoate carboxy-lyase (2-methylbutanal-forming) RHEA:21108|EC:4.1.1.72|KEGG_REACTION:R03894|MetaCyc:4.1.1.72-RXN molecular_function owl:Class GO:0070473 biolink:NamedThing negative regulation of uterine smooth muscle contraction Any process that decreases the frequency, rate or extent of uterine smooth muscle contraction. tmpzr1t_l9r_go_relaxed.owl down regulation of uterine smooth muscle contraction|down-regulation of uterine smooth muscle contraction|negative regulation of myometrial smooth muscle contraction|negative regulation of myometrial contraction|negative regulation of myometrium contraction|inhibition of uterine smooth muscle contraction|downregulation of uterine smooth muscle contraction|uterine smooth muscle relaxation biological_process owl:Class GO:0022819 biolink:NamedThing potassium ion uniporter activity Catalysis of the active transport of a potassium ion across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905506 biolink:NamedThing gerontoplast stroma Any plastid stroma that is part of a gerontoplast. tmpzr1t_l9r_go_relaxed.owl tb 2016-09-27T20:01:34Z cellular_component owl:Class GO:0033899 biolink:NamedThing ribonuclease U2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides ending in Ap or Gp with 2',3'-cyclic phosphate intermediates. tmpzr1t_l9r_go_relaxed.owl purine specific endoribonuclease activity|ribonuclease (purine) activity|purine-specific RNase activity|pleospora RNase activity|purine-specific ribonuclease activity|trichoderma koningi RNase III activity|RNase U2 activity EC:4.6.1.20|MetaCyc:3.1.27.4-RXN molecular_function owl:Class GO:0047293 biolink:NamedThing 4-hydroxybenzoate nonaprenyltransferase activity Catalysis of the reaction: p-hydroxybenzoate + solanesyl pyrophosphate = nonaprenyl-4-hydroxybenzoate + diphosphate. tmpzr1t_l9r_go_relaxed.owl p-hydroxybenzoate polyprenyltransferase activity|p-hydroxybenzoic acid-polyprenyl transferase activity|4-hydroxybenzoate transferase activity|p-hydroxybenzoic-polyprenyl transferase activity|p-hydroxybenzoate dimethylallyltransferase activity|solanesyl-diphosphate:4-hydroxybenzoate nonaprenyltransferase activity|nonaprenyl-4-hydroxybenzoate transferase activity MetaCyc:2.5.1.39-RXN|RHEA:17709|EC:2.5.1.39 molecular_function owl:Class GO:0052767 biolink:NamedThing mannosyl-oligosaccharide 1,6-alpha-mannosidase activity Catalysis of the hydrolysis of the alpha-(1->6) bonds of alpha-D-mannose residues in mannosyl-oligosaccharide. tmpzr1t_l9r_go_relaxed.owl 1,6-alpha-mannosidase activity|alpha-1,6-mannosyl-oligosaccharide alpha-D-mannohydrolase activity|1,6-alpha-mannosyl-oligosaccharide alpha-D-mannohydrolase activity|alpha-1,6-mannosidase activity EC:3.1.1.- ai 2011-09-30T12:55:24Z molecular_function owl:Class GO:0009015 biolink:NamedThing N-succinylarginine dihydrolase activity Catalysis of the reaction: N(2)-succinyl-L-arginine + 2 H(2)O + 2 H(+) = N(2)-succinyl-L-ornithine + CO(2) + 2 NH(4)(+). tmpzr1t_l9r_go_relaxed.owl N2-succinylarginine dihydrolase activity|arginine succinylhydrolase activity|AruB|2-N-succinyl-L-arginine iminohydrolase (decarboxylating)|N2-succinyl-L-arginine iminohydrolase (decarboxylating)|SADH|succinylarginine dihydrolase activity|AstB MetaCyc:SUCCARGDIHYDRO-RXN|KEGG_REACTION:R04189|EC:3.5.3.23|RHEA:19533 molecular_function owl:Class GO:0097005 biolink:NamedThing adipokinetic hormone receptor binding Binding to an adipokinetic hormone receptor. Adipokinetic hormones (AKHs) are peptide hormones that are involved in the mobilization of sugar and lipids from the insect fat body during energy-requiring activities such as flight and locomotion. They also contribute to hemolymph sugar homeostasis. tmpzr1t_l9r_go_relaxed.owl AKH receptor binding pr 2011-03-14T12:58:19Z molecular_function owl:Class GO:0018897 biolink:NamedThing dibenzothiophene desulfurization The removal of the sulfur atom from dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond. tmpzr1t_l9r_go_relaxed.owl dibenzothiophene desulphurization MetaCyc:PWY-681|UM-BBD_pathwayID:dbt biological_process owl:Class GO:0018542 biolink:NamedThing 2,3-dihydroxy DDT 1,2-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxy DDT + O2 = 6-oxo-2-hydroxy-7-(4-chlorophenyl)-3,8,8,8-tetrachloroocta-2E,4E-dienoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0452 molecular_function owl:Class GO:0036333 biolink:NamedThing hepatocyte homeostasis Any biological process involved in the maintenance of the steady-state number of hepatocytes within a population of cells. Hepatocytes are specialized epithelial cells of the liver that are organized into interconnected plates called lobules. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-05T10:17:07Z biological_process owl:Class GO:1903849 biolink:NamedThing positive regulation of aorta morphogenesis Any process that activates or increases the frequency, rate or extent of aorta morphogenesis. tmpzr1t_l9r_go_relaxed.owl activation of aorta morphogenesis|up regulation of aorta morphogenesis|up-regulation of aorta morphogenesis|upregulation of aorta morphogenesis rph 2015-01-23T14:01:09Z biological_process owl:Class GO:0033980 biolink:NamedThing phosphonopyruvate decarboxylase activity Catalysis of the reaction: 3-phosphonopyruvate + 2 H(+) = CO(2) + phosphonoacetaldehyde. tmpzr1t_l9r_go_relaxed.owl 3-phosphonopyruvate carboxy-lyase (2-phosphonoacetaldehyde-forming) activity|3-phosphonopyruvate carboxy-lyase activity EC:4.1.1.82|KEGG_REACTION:R04053|MetaCyc:4.1.1.82-RXN|RHEA:20768 molecular_function owl:Class GO:0052725 biolink:NamedThing inositol-1,3,4-trisphosphate 6-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4-trisphosphate + ATP = 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl inositol 1,3,4-trisphosphate 6-kinase activity|1D-myo-inositol-trisphosphate 6-kinase activity|inositol-trisphosphate 6-kinase activity|Ins(1,3,4)P3 6-kinase activity|IP3 6-kinase activity|ATP:1D-myo-inositol-1,3,4-trisphosphate 6-phosphotransferase activity|ins(1,3,4)P(3) 6-kinase activity RHEA:20940|EC:2.7.1.159|Reactome:R-HSA-2267372|MetaCyc:2.7.1.133-RXN|Reactome:R-HSA-1855197 ai 2011-08-16T12:42:59Z molecular_function owl:Class GO:0021759 biolink:NamedThing globus pallidus development The progression of the globus pallidus over time from its initial formation until its mature state. The globus pallidus is one of the basal ganglia involved with control of voluntary movement in the brain. tmpzr1t_l9r_go_relaxed.owl pallidum development biological_process owl:Class GO:0102491 biolink:NamedThing dGTP phosphohydrolase activity Catalysis of the reaction: dGTP + 2 H2O = dGMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.5|MetaCyc:RXN-14208 molecular_function owl:Class GO:0036087 biolink:NamedThing glutathione synthase complex A protein complex composed of two or more polypeptide subunits, and which possesses glutathione synthase activity (catalysis of the reaction: L-gamma-glutamyl-L-cysteine + ATP + glycine = ADP + glutathione + 2 H(+) + phosphate). In eukaryotes, the complex is homodimeric, in E. coli glutathione synthase exists as a tetramer, and in S. pombe the complex exists as a homodimer or a heterotetramer. tmpzr1t_l9r_go_relaxed.owl glutathione synthetase complex bf 2012-01-05T04:29:20Z cellular_component owl:Class GO:0017193 biolink:NamedThing N-terminal peptidyl-glycine acetylation The acetylation of the N-terminal glycine of proteins to form the derivative N-acetylglycine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0046 biological_process owl:Class GO:0031843 biolink:NamedThing type 2 neuropeptide Y receptor binding Binding to a type 2 neuropeptide Y receptor. tmpzr1t_l9r_go_relaxed.owl type 2 neuropeptide Y receptor ligand molecular_function owl:Class GO:0031841 biolink:NamedThing neuropeptide Y receptor binding Binding to a neuropeptide Y receptor. tmpzr1t_l9r_go_relaxed.owl neuropeptide Y receptor ligand|NPY receptor binding molecular_function owl:Class GO:0033562 biolink:NamedThing co-transcriptional gene silencing by RNA interference machinery A process in which the RNAi machinery mediates the degradation of nascent transcripts in association with chromatin. tmpzr1t_l9r_go_relaxed.owl co-transcriptional gene silencing by small RNA|cotranscriptional gene silencing by small RNA|RNAi-mediated CTGS|cotranscriptional gene silencing by RNA interference machinery|small RNA-mediated cotranscriptional gene silencing biological_process owl:Class GO:0018507 biolink:NamedThing cis-3,4-dihydrophenanthrene-3,4-diol dehydrogenase activity Catalysis of the reaction: (3S,4R)-3,4-dihydrophenanthrene-3,4-diol + NAD(+) = H(+) + NADH + phenanthrene-3,4-diol. tmpzr1t_l9r_go_relaxed.owl (+)-cis-3,4-dihydrophenanthrene-3,4-diol:NAD+ 3,4-oxidoreductase activity|cis-3,4-dihydroxy-3,4-dihydrophenanthrene dehydrogenase activity UM-BBD_reactionID:r0488|MetaCyc:1.3.1.49-RXN|RHEA:16253|KEGG_REACTION:R04151|EC:1.3.1.49 molecular_function owl:Class GO:1902013 biolink:NamedThing poly(glycerol phosphate) teichoic acid metabolic process The chemical reactions and pathways involving poly(glycerol phosphate) teichoic acid. tmpzr1t_l9r_go_relaxed.owl poly(glycerol phosphate) teichoic acid metabolism tb 2013-03-22T15:43:45Z biological_process owl:Class GO:0001535 biolink:NamedThing radial spoke head Protein complex forming part of eukaryotic flagellar apparatus. tmpzr1t_l9r_go_relaxed.owl radial spokehead cellular_component owl:Class GO:0048309 biolink:NamedThing endoplasmic reticulum inheritance The partitioning of endoplasmic reticulum between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl ER inheritance biological_process owl:Class GO:0102188 biolink:NamedThing 4alpha-methyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-methyl-5alpha-cholesta-7,24-dien-3beta-ol + O2 + NADH(2-) + H+ <=> 4alpha-hydroxymethyl-5alpha-cholesta-7,24-dien-3beta-ol + NAD(1-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11956 molecular_function owl:Class GO:0038006 biolink:NamedThing netrin receptor activity involved in chemoattraction Combining with a netrin signal and transmitting the signal from one side of the membrane to the other to contribute to the directed movement of a motile cell towards a higher concentration of netrin. tmpzr1t_l9r_go_relaxed.owl netrin receptor activity involved in positive chemotaxis|attractive netrin receptor activity bf 2011-06-10T02:22:29Z molecular_function owl:Class GO:0031506 biolink:NamedThing cell wall glycoprotein biosynthetic process The chemical reactions and pathways resulting in the formation of cell wall glycoproteins, any cell wall protein that contains covalently bound sugar residues. tmpzr1t_l9r_go_relaxed.owl cell wall glycoprotein synthesis|cell wall glycoprotein formation|cell wall glycoprotein anabolism|cell wall glycoprotein biosynthesis biological_process owl:Class GO:0034022 biolink:NamedThing 3-(hydroxyamino)phenol mutase activity Catalysis of the reaction: 3-hydroxyaminophenol = aminohydroquinone. tmpzr1t_l9r_go_relaxed.owl 3-(hydroxyamino)phenol hydroxymutase activity|3-hydroxylaminophenol mutase activity|3HAP mutase activity KEGG_REACTION:R06988|UM-BBD_enzymeID:e0953|RHEA:20577|EC:5.4.4.3|MetaCyc:5.4.4.3-RXN molecular_function owl:Class GO:0070431 biolink:NamedThing nucleotide-binding oligomerization domain containing 2 signaling pathway Any series of molecular signals generated as a consequence of binding to nucleotide-binding oligomerization domain containing 2 (NOD2). tmpzr1t_l9r_go_relaxed.owl nucleotide-binding oligomerization domain containing 2 signalling pathway|NOD2 signaling pathway biological_process owl:Class GO:0050275 biolink:NamedThing scopoletin glucosyltransferase activity Catalysis of the reaction: scopoletin + UDP-D-glucose = H(+) + scopolin + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:scopoletin glucosyltransferase activity|SGTase activity|UDPglucose:scopoletin O-beta-D-glucosyltransferase activity|UDP-glucose:scopoletin O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-scopoletin glucosyltransferase activity RHEA:20453|KEGG_REACTION:R03594|EC:2.4.1.128|MetaCyc:SCOPOLETIN-GLUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0019802 biolink:NamedThing cyclization of glutamine involved in intein-mediated protein splicing The cyclization of glutamine to yield an L-glutamimide residue at the C-terminus of an excised intein during protein splicing. tmpzr1t_l9r_go_relaxed.owl cyclization of glutamine, during protein splicing RESID:AA0303 Note that this term should not be confused with 'peptidyl-pyroglutamic acid biosynthesis, using glutaminyl-peptide cyclotransferase ; GO:0017186'. See also the biological process term 'intein-mediated protein splicing ; GO:0016539'. biological_process owl:Class GO:0043212 biolink:NamedThing carbohydrate-exporting ABC transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + carbohydrate(in) -> ADP + phosphate + carbohydrate(out). tmpzr1t_l9r_go_relaxed.owl carbohydrate-exporting ATPase activity https://github.com/geneontology/go-ontology/issues/17289 molecular_function owl:Class GO:0031271 biolink:NamedThing lateral pseudopodium assembly The extension of a pseudopodium from the lateral area of a cell. tmpzr1t_l9r_go_relaxed.owl lateral pseudopodium formation biological_process owl:Class GO:0016540 biolink:NamedThing protein autoprocessing Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071005 biolink:NamedThing U2-type precatalytic spliceosome A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs. tmpzr1t_l9r_go_relaxed.owl major precatalytic spliceosome|mammalian U2-type spliceosomal complex B|GT-AG precatalytic spliceosome|mammalian U2-type spliceosomal complex B1|yeast U12-type spliceosomal complex A2-1 mah 2009-07-30T12:00:35Z cellular_component owl:Class GO:1902396 biolink:NamedThing protein localization to bicellular tight junction A process in which a protein is transported to, or maintained in, a location within a bicellular tight junction. tmpzr1t_l9r_go_relaxed.owl protein localization in tight junction|protein localisation to tight junction|protein localisation in tight junction tb 2013-09-11T21:43:13Z biological_process owl:Class GO:0005227 biolink:NamedThing calcium activated cation channel activity Enables the calcium concentration-regulatable energy-independent passage of cations across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl intracellular calcium-activated potassium channel|polycystin molecular_function owl:Class GO:0006965 biolink:NamedThing positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl stimulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|upregulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|anti-Gram-positive bacterial peptide induction|anti-Gram-positive bacterial polypeptide induction|up regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|up-regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|activation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria biological_process owl:Class GO:0047268 biolink:NamedThing galactinol-raffinose galactosyltransferase activity Catalysis of the reaction: raffinose + 1-alpha-D-galactosyl-myo-inositol = stachyose + myo-inositol. tmpzr1t_l9r_go_relaxed.owl alpha-D-(1->3)-galactosyl-myo-inositol:raffinose galactosyltransferase activity|stachyose synthetase activity MetaCyc:2.4.1.67-RXN|RHEA:20776|EC:2.4.1.67 molecular_function owl:Class GO:1904484 biolink:NamedThing cloacal gland development The process whose specific outcome is the progression of a cloacal gland over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl mr 2015-07-15T22:14:39Z biological_process owl:Class GO:0004771 biolink:NamedThing sterol esterase activity Catalysis of the reaction: a steryl ester + H2O = a sterol + a fatty acid. tmpzr1t_l9r_go_relaxed.owl cholesterase activity|triterpenol esterase activity|sterol ester hydrolase activity|cholesterol ester hydrolase activity|cholesterol ester synthase activity|cholesteryl ester synthase activity|acylcholesterol lipase activity|steryl-ester acylhydrolase activity|cholesterol esterase activity|cholesteryl ester hydrolase activity|cholesteryl esterase activity EC:3.1.1.13|Reactome:R-HSA-6813720|Reactome:R-HSA-8865667|RHEA:10100|Reactome:R-HSA-192417|MetaCyc:STEROL-ESTERASE-RXN molecular_function owl:Class GO:0140698 biolink:NamedThing attachment of telomeric heterochromatin to nuclear envelope The process in which physical connections are formed between sub-telomeric heterochromatin and the nuclear envelope facilitating bouquet formation. tmpzr1t_l9r_go_relaxed.owl attachment of telomeres to nuclear envelope|heterochromatin organization|attachment of telomeric chromatin to nuclear envelope https://github.com/geneontology/go-ontology/issues/22043|https://github.com/geneontology/go-ontology/issues/22083 pg 2021-08-26T14:46:17Z biological_process owl:Class GO:0004509 biolink:NamedThing steroid 21-monooxygenase activity Catalysis of the reaction: A C(21) steroid + [reduced NADPH--hemoprotein reductase] + O(2) = a 21-hydroxy-C(21)-steroid + [oxidized NADPH--hemoprotein reductase] + H(2)O. tmpzr1t_l9r_go_relaxed.owl 21-hydroxylase activity|cytochrome p450 XXIA1 activity|steroid,hydrogen-donor:oxygen oxidoreductase (21-hydroxylating)|cytochrome P450 CYP21A1|steroid 21-hydroxylase activity EC:1.14.14.16|RHEA:65612|Reactome:R-HSA-193964|MetaCyc:STEROID-21-MONOOXYGENASE-RXN|Reactome:R-HSA-5601976|Reactome:R-HSA-193981 molecular_function owl:Class GO:0110075 biolink:NamedThing regulation of ferroptosis Any process that modulates the frequency, rate or extent of ferroptosis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-01-11T17:51:48Z biological_process owl:Class GO:0015018 biolink:NamedThing galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein. tmpzr1t_l9r_go_relaxed.owl UDPglucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity|UDP-glucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity|glucuronosyltransferase I activity|uridine diphosphate glucuronic acid:acceptor glucuronosyltransferase activity Reactome:R-HSA-1889955|RHEA:24168|EC:2.4.1.135|Reactome:R-HSA-3560802|MetaCyc:2.4.1.135-RXN|Reactome:R-HSA-9638064 molecular_function owl:Class GO:0080070 biolink:NamedThing 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 8-methylthiooctyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 8-methylthiooctyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4333 dhl 2009-04-13T04:07:58Z molecular_function owl:Class GO:0036361 biolink:NamedThing racemase activity, acting on amino acids and derivatives Catalysis of the interconversion of the two enantiomers of a chiral amino acid or amino acid derivative. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-21T11:13:47Z molecular_function owl:Class GO:0070264 biolink:NamedThing transcription factor TFIIIE complex A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIE contains a specific subset of ribosomal proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042392 biolink:NamedThing sphingosine-1-phosphate phosphatase activity Catalysis of the reaction: sphingosine 1-phosphate + H2O = sphingosine + phosphate. tmpzr1t_l9r_go_relaxed.owl SPPase activity|sphingosine-1-phosphate phosphohydrolase activity|SPP phosphatase activity Reactome:R-HSA-428696|MetaCyc:RXN3DJ-25|Reactome:R-HSA-428690|Reactome:R-HSA-428701|RHEA:27518 molecular_function owl:Class GO:0001006 biolink:NamedThing RNA polymerase III type 3 promoter sequence-specific DNA binding Binding to a sequence of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III (Pol III). A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not been observed in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 3 promoter DNA binding krc 2010-08-18T06:02:26Z GO:0001032 molecular_function owl:Class GO:1904813 biolink:NamedThing ficolin-1-rich granule lumen Any membrane-enclosed lumen that is part of a ficolin-1-rich granule. tmpzr1t_l9r_go_relaxed.owl membrane-enclosed lumen of ficolin granule|membrane-enclosed lumen of ficolin-1-rich granule|ficolin-1-rich granule membrane-enclosed lumen|membrane-enclosed lumen of ficolin-1 rich granule mec 2015-11-13T11:58:20Z cellular_component owl:Class GO:0022849 biolink:NamedThing glutamate-gated calcium ion channel activity Enables the transmembrane transfer of a calcium ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047034 biolink:NamedThing 15-hydroxyicosatetraenoate dehydrogenase activity Catalysis of the reaction: NAD(P)+ + (15S)-15-hydroxy-5,8,11-cis-13-trans-icosatetraenoate = NAD(P)H + H+ + 15-oxo-5,8,11-cis-13-trans-icosatetraenoate. tmpzr1t_l9r_go_relaxed.owl 15-hydroxyeicosatetraenoate dehydrogenase activity|(15S)-15-hydroxy-5,8,11-cis-13-trans-icosatetraenoate:NAD(P)+ 15-oxidoreductase activity Reactome:R-HSA-2161789|MetaCyc:1.1.1.232-RXN|EC:1.1.1.232 molecular_function owl:Class GO:0010617 biolink:NamedThing circadian regulation of calcium ion oscillation Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl circadian regulation of Ca2+ oscillation|circadian regulation of cytosolic calcium ion homeostasis|circadian regulation of cytosolic free calcium ion oscillation|circadian regulation of [Ca2+]cyt oscillation biological_process owl:Class GO:0034269 biolink:NamedThing discadenine catabolic process The chemical reactions and pathways resulting in the breakdown of discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid. tmpzr1t_l9r_go_relaxed.owl discadenine catabolism|discadenine degradation|discadenine breakdown biological_process owl:Class GO:0043554 biolink:NamedThing aerobic respiration, using arsenite as electron donor The oxidation of arsenite to arsenate, using oxygen (O2) as the electron acceptor. Arsenite oxidase provides electrons to an electron carrier which transfers them to oxygen utilizing respiratory systems. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033381 biolink:NamedThing establishment of granzyme B localization to T cell secretory granule The directed movement of the protease granzyme B to a location within a secretory granule in a T cell. tmpzr1t_l9r_go_relaxed.owl T-lymphocyte secretory granule storage of granzyme B|establishment of granzyme B localisation in T cell secretory granule|establishment of granzyme B localization in T lymphocyte secretory granule|establishment of granzyme B localization in T-lymphocyte secretory granule|establishment of granzyme B localization in T-cell secretory granule|establishment of granzyme B localization in T cell secretory granule biological_process owl:Class GO:0102817 biolink:NamedThing caffeoyl-CoA:3-O-glucosyl-5-O-(caffeoylglucoside-3'-O-glucoside) 3'-O-hydroxycinnamoyltransferase activity Catalysis of the reaction: delphinidin 3-O-glucosyl-5-O-(caffeoylglucoside-3'-O-glucoside) + caffeoyl-CoA <=> gentiodelphin + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8235 molecular_function owl:Class GO:0043768 biolink:NamedThing S-ribosylhomocysteine lyase activity Catalysis of the reaction: S-(5-deoxy-D-ribos-5-yl)-L-homocysteine = (S)-4,5-dihydroxypentane-2,3-dione + L-homocysteine. tmpzr1t_l9r_go_relaxed.owl LuxS|ribosylhomocysteinase activity|S-(5-deoxy-D-ribos-5-yl)-L-homocysteine homocysteine-lyase [(4S)-4,5-dihydroxypentan-2,3-dione-forming]|S-ribosylhomocysteinase activity EC:4.4.1.21|RHEA:17753|KEGG_REACTION:R01291|MetaCyc:RIBOSYLHOMOCYSTEINASE-RXN GO:0019138 molecular_function owl:Class GO:0097616 biolink:NamedThing positive regulation by host of symbiont type IV pilus-dependent motility Any process in which an organism activates, maintains or increases the frequency, rate or extent of the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of bacterial type IV pilus-dependent motility pr 2014-06-10T13:19:51Z biological_process owl:Class GO:0097615 biolink:NamedThing modulation by host of symbiont type IV pilus-dependent motility The process in which an organism effects a change in the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of bacterial type IV pilus-dependent motility pr 2014-06-10T13:17:13Z biological_process owl:Class GO:0031825 biolink:NamedThing type 1F serotonin receptor binding Binding to a type 1F serotonin receptor. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptamine 1F receptor binding|type 1F serotonin receptor ligand molecular_function owl:Class GO:0072563 biolink:NamedThing endothelial microparticle A blood microparticle that is derived from, and contains membrane receptors as well as other proteins characteristic of, an endothelial cell. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-28T01:53:25Z cellular_component owl:Class GO:0060992 biolink:NamedThing response to fungicide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fungicide stimulus. Fungicides are chemicals used to kill fungi. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-13T08:05:58Z biological_process owl:Class GO:0060068 biolink:NamedThing vagina development The reproductive developmental process whose specific outcome is the progression of the vagina over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901359 biolink:NamedThing tungstate binding Binding to tungstate. tmpzr1t_l9r_go_relaxed.owl crds 2012-09-14T08:33:56Z molecular_function owl:Class GO:0002116 biolink:NamedThing semaphorin receptor complex A stable binary complex of a neurophilin and a plexin, together forming a functional semaphorin receptor. tmpzr1t_l9r_go_relaxed.owl plexin-neurophilin complex cellular_component owl:Class GO:0016980 biolink:NamedThing creatinase activity Catalysis of the reaction: creatine + H(2)O = sarcosine + urea. tmpzr1t_l9r_go_relaxed.owl creatine amidinohydrolase activity MetaCyc:CREATINASE-RXN|RHEA:22456|EC:3.5.3.3|KEGG_REACTION:R01566 molecular_function owl:Class GO:0102493 biolink:NamedThing wogonin 7-O-glucosyltransferase activity Catalysis of the reaction: wogonin + UDP-alpha-D-glucose <=> wogonin 7-O-beta-D-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14239 molecular_function owl:Class GO:0044027 biolink:NamedThing hypermethylation of CpG island An increase in the epigenetic methylation of cytosine and adenosine residues in a CpG island in DNA. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes. tmpzr1t_l9r_go_relaxed.owl DNA hypermethylation of CpG island biological_process owl:Class GO:0044026 biolink:NamedThing DNA hypermethylation An increase in the epigenetic methylation of cytosine and adenosine residues in DNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016006 biolink:NamedThing Nebenkern A product of the fusion of the mitochondria during spermatogenesis. After the completion of meiosis the mitochondria of the spermatid collect along side the nucleus and fuse into two masses; these wrap around each other to produce the spherical Nebenkern. During flagellum elongation the Nebenkern unfolds and the two derivatives (major and minor mitochondrial derivatives) elongate down the axoneme. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20737 cellular_component owl:Class GO:0071980 biolink:NamedThing cell surface adhesin-mediated gliding motility Cell gliding that results from the actions of cell surface adhesin proteins that are propelled by membrane motor proteins. tmpzr1t_l9r_go_relaxed.owl mah 2010-10-21T03:03:44Z biological_process owl:Class GO:0103003 biolink:NamedThing oleate peroxygenase activity Catalysis of the reaction: oleate + a lipid hydroperoxide <=> 9,10-epoxystearate + a lipid alcohol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9804 molecular_function owl:Class GO:0047640 biolink:NamedThing aldose 1-dehydrogenase activity Catalysis of the reaction: D-aldose + NAD+ = D-aldonolactone + NADH. tmpzr1t_l9r_go_relaxed.owl D-aldose:NAD+ 1-oxidoreductase activity|aldose dehydrogenase activity|dehydrogenase, D-aldohexose EC:1.1.1.121|MetaCyc:ALDOSE-1-DEHYDROGENASE-RXN|RHEA:15917 molecular_function owl:Class GO:0008893 biolink:NamedThing guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity Catalysis of the reaction: guanosine 3',5'-bis(diphosphate) + H2O = guanosine 5'-diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl penta-phosphate guanosine-3'-pyrophosphohydrolase activity|(ppGpp)ase activity|penta-phosphate guanosine-3'-diphosphohydrolase activity|guanosine-3',5'-bis(diphosphate) 3'-diphosphohydrolase activity|PpGpp phosphohydrolase activity|PpGpp-3'-pyrophosphohydrolase activity|guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase activity|guanosine-3',5'-bis(diphosphate) 3'-pyrophosphatase activity MetaCyc:PPGPPSYN-RXN|EC:3.1.7.2|RHEA:14253 molecular_function owl:Class GO:0050254 biolink:NamedThing rhodopsin kinase activity Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin. tmpzr1t_l9r_go_relaxed.owl opsin kinase (phosphorylating) activity|GPCR kinase 1 activity|ATP:rhodopsin phosphotransferase activity|GRK7|G-protein-coupled receptor kinase 1 activity|GRK1|opsin kinase activity|STK14|RK|rhodopsin kinase (phosphorylating) activity|cone opsin kinase activity EC:2.7.11.14|Reactome:R-HSA-2581474|MetaCyc:2.7.11.14-RXN|RHEA:23356 molecular_function owl:Class GO:0019505 biolink:NamedThing resorcinol metabolic process The chemical reactions and pathways involving resorcinol (C6H4(OH)2), a benzene derivative with many applications, including dyes, explosives, resins and as an antiseptic. tmpzr1t_l9r_go_relaxed.owl 1,3-dihydroxybenzene metabolic process|1,3-benzenediol metabolic process|resorcinol metabolism|1,3-benzenediol metabolism|1,3-dihydroxybenzene metabolism MetaCyc:P343-PWY biological_process owl:Class GO:0120238 biolink:NamedThing sperm glycocalyx The carbohydrate rich layer at the outermost periphery of a sperm cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19782 krc 2020-07-27T21:42:50Z cellular_component owl:Class GO:0019082 biolink:NamedThing viral protein processing Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035230 biolink:NamedThing cytoneme A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um. tmpzr1t_l9r_go_relaxed.owl membrane nanotube Wikipedia:Membrane_nanotube cellular_component owl:Class GO:0004776 biolink:NamedThing succinate-CoA ligase (GDP-forming) activity Catalysis of the reaction: GTP + succinate + CoA = GDP + succinyl-CoA + phosphate. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA synthetase (GDP-forming) activity|succinate-phosphorylating enzyme|succinyl coenzyme A synthetase (guanosine diphosphate-forming) activity|G-STK|P-enzyme|succinyl CoA synthetase activity|succinate:CoA ligase (GDP-forming) activity|succinyl coenzyme A synthetase|succinyl coenzyme A synthetase (GDP-forming) activity|SCS|succinic thiokinase EC:6.2.1.4|RHEA:22120|Reactome:R-HSA-71775|MetaCyc:SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|KEGG_REACTION:R00432 molecular_function owl:Class GO:0009575 biolink:NamedThing chromoplast stroma The space enclosed by the double membrane of a chromoplast but excluding the photosynthetic material. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061029 biolink:NamedThing eyelid development in camera-type eye The progression of the eyelid in a camera-type eye from its formation to the mature state. The eyelid is a membranous cover that helps protect and lubricate the eye. tmpzr1t_l9r_go_relaxed.owl dph 2010-02-09T09:36:11Z biological_process owl:Class GO:0038105 biolink:NamedThing sequestering of TGFbeta from receptor via TGFbeta binding Binding to a transforming growth factor-beta (TGFbeta) protein in the extracellular region, and inhibiting TGFbeta signaling by preventing TGFbeta from binding to its cell surface receptor. tmpzr1t_l9r_go_relaxed.owl extracellular sequestering of transforming growth factor-beta|extracellular sequestering of TGFbeta This term is for annotation of gene products that bind to TGFbeta. For gene products that tether the TGFbeta-containing latency complex to the extracellular matrix, but do not necessarily bind TGF-beta directly, consider instead annotating to 'sequestering of TGFbeta in extracellular matrix ; GO:0035583'. bf 2012-02-22T11:35:58Z biological_process owl:Class GO:1900728 biolink:NamedThing cardiac neural crest cell delamination involved in outflow tract morphogenesis Any cardiac neural crest cell delamination that is involved in outflow tract morphogenesis. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-25T09:50:24Z biological_process owl:Class GO:0036036 biolink:NamedThing cardiac neural crest cell delamination The negative regulation of cell adhesion process in which a cardiac neural crest cell physically separates from the rest of the neural tube. tmpzr1t_l9r_go_relaxed.owl bf 2011-11-02T05:23:29Z biological_process owl:Class GO:0008828 biolink:NamedThing dATP pyrophosphohydrolase activity Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-(deoxy)adenosine-triphosphate pyrophosphatase activity|2-hydroxy-(d)ATP pyrophosphatase activity|2-hydroxy-adenosine triphosphate pyrophosphatase activity|2-hydroxy-ATP pyrophosphatase activity https://github.com/geneontology/go-ontology/issues/20656 Reactome:R-HSA-2395872|MetaCyc:RXN0-384|Reactome:R-HSA-2395818|EC:3.6.1.56 jl 2012-10-18T13:22:38Z GO:0044713|GO:0044714 molecular_function owl:Class GO:0061139 biolink:NamedThing bud field specification The regionalization process in which the identity of a bud primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T09:21:01Z biological_process owl:Class GO:0021876 biolink:NamedThing Notch signaling pathway involved in forebrain neuroblast division The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to the self renewal of neuroblasts in the forebrain. tmpzr1t_l9r_go_relaxed.owl Notch signalling pathway in forebrain neuroblast division biological_process owl:Class GO:0050476 biolink:NamedThing acetylenedicarboxylate decarboxylase activity Catalysis of the reaction: H2O + acetylenedicarboxylate = CO2 + pyruvate. tmpzr1t_l9r_go_relaxed.owl acetylenedicarboxylate carboxy-lyase (pyruvate-forming)|acetylenedicarboxylate carboxy-lyase activity|acetylenedicarboxylate hydrase activity|acetylenedicarboxylate hydratase activity EC:4.1.1.78|RHEA:17733|MetaCyc:4.1.1.78-RXN molecular_function owl:Class GO:0003236 biolink:NamedThing sinus venosus morphogenesis The process in which the sinus venosus is generated and organized. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:16:52Z biological_process owl:Class GO:1903093 biolink:NamedThing regulation of protein K48-linked deubiquitination Any process that modulates the frequency, rate or extent of protein K48-linked deubiquitination. tmpzr1t_l9r_go_relaxed.owl bf 2014-06-03T12:27:48Z biological_process owl:Class GO:0035784 biolink:NamedThing nickel cation homeostasis Any process involved in the maintenance of an internal steady state of nickel cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl nickel homeostasis bf 2011-04-05T09:55:14Z biological_process owl:Class GO:0000224 biolink:NamedThing peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Catalysis of the reaction: 4-N-(N-acetyl-D-glucosaminyl)-protein + H2O = N-acetyl-beta-D-glucosaminylamine + peptide L-aspartate. This reaction is the hydrolysis of an N4-(acetyl-beta-D-glucosaminyl)asparagine residue in which the N-acetyl-D-glucosamine residue may be further glycosylated, to yield a (substituted) N-acetyl-beta-D-glucosaminylamine and the peptide containing an aspartic residue. tmpzr1t_l9r_go_relaxed.owl glycopeptide N-glycosidase activity|PNGase|glycopeptidase activity|peptide:N-glycanase|N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase activity|N-oligosaccharide glycopeptidase activity|jack-bean glycopeptidase|N-glycanase activity|PNGase A|PNGase F EC:3.5.1.52|Reactome:R-HSA-8850594|MetaCyc:3.5.1.52-RXN molecular_function owl:Class GO:0046356 biolink:NamedThing acetyl-CoA catabolic process The chemical reactions and pathways resulting in the breakdown of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA breakdown|acetyl-CoA catabolism|acetyl-CoA degradation biological_process owl:Class GO:0019918 biolink:NamedThing peptidyl-arginine methylation, to symmetrical-dimethyl arginine The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N'(omega)-dimethyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0067|RESID:AA0069 biological_process owl:Class GO:0001522 biolink:NamedThing pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. tmpzr1t_l9r_go_relaxed.owl pseudouridylation Wikipedia:Pseudouridylation|Wikipedia:Pseudouridine biological_process owl:Class GO:0032487 biolink:NamedThing regulation of Rap protein signal transduction Any process that modulates the frequency, rate or extent of Rap protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032486 biolink:NamedThing Rap protein signal transduction A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061266 biolink:NamedThing mesonephric interstitial fibroblast differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the interstitial fibroblasts of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl mesonephros interstitial cell differentiation dph 2010-08-30T03:12:17Z biological_process owl:Class GO:1902602 biolink:NamedThing aluminum ion transmembrane transport The process in which an aluminium ion is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl aluminium transmembrane transport|aluminum transmembrane transport|aluminium ion transmembrane transport pr 2013-12-20T11:09:01Z biological_process owl:Class GO:0071791 biolink:NamedThing chemokine (C-C motif) ligand 5 binding Binding to chemokine (C-C motif) ligand 5. tmpzr1t_l9r_go_relaxed.owl Regulated upon Activation, Normal T-cell Expressed, and Secreted binding|CCL5 binding|RANTES binding mah 2010-09-01T02:28:22Z molecular_function owl:Class GO:0042953 biolink:NamedThing lipoprotein transport The directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086088 biolink:NamedThing voltage-gated potassium channel activity involved in Purkinje myocyte action potential repolarization Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a Purkinje myocyte contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. tmpzr1t_l9r_go_relaxed.owl dph 2011-11-22T01:32:02Z molecular_function owl:Class GO:0043595 biolink:NamedThing endospore cortex A layer surrounding a bacterial endospore found inside the outer endospore membrane, but outside the membrane surrounding the endospore core. It consists of peptidoglycan of a different chemical nature than that found in vegetative cell walls which results in less cross-linking of peptidoglycan. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0007481 biolink:NamedThing haltere disc morphogenesis The process in which the anatomical structures derived from the haltere disc are generated and organized. This includes the transformation of a haltere imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into the recognizable adult capitellum, pedicel, haltere sclerite, metathoracic spiracle and metanotum. tmpzr1t_l9r_go_relaxed.owl haltere disc metamorphosis biological_process owl:Class GO:0046922 biolink:NamedThing peptide-O-fucosyltransferase activity Catalysis of the transfer of an alpha-L-fucosyl residue from GDP- beta-L-fucose to the serine hydroxy group of a protein acceptor. tmpzr1t_l9r_go_relaxed.owl GDP-beta-L-fucose:polypeptide O-alpha-L-fucosyltransferase activity|GDP-L-fucose:polypeptide fucosyltransferase activity|GDP-fucose protein O-fucosyltransferase activity|GDP-fucose:polypeptide fucosyltransferase activity MetaCyc:2.4.1.221-RXN|EC:2.4.1.221|Reactome:R-HSA-5173192|Reactome:R-HSA-1912349 molecular_function owl:Class GO:0036066 biolink:NamedThing protein O-linked fucosylation The process of transferring a fucosyl group to a serine or threonine residues in a protein acceptor molecule, to form an O-linked protein-sugar linkage. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-15T11:17:20Z biological_process owl:Class GO:0051131 biolink:NamedThing chaperone-mediated protein complex assembly The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. tmpzr1t_l9r_go_relaxed.owl cellular chaperone-mediated protein complex assembly|chaperone activity|protein complex assembly, multichaperone pathway GO:0034619 biological_process owl:Class GO:0090380 biolink:NamedThing seed trichome maturation A developmental process, independent of morphogenetic (shape) change, that is required for a seed trichome to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl These processes continue to 60 DPA in Gossypium spp. tb 2010-09-15T02:29:42Z biological_process owl:Class GO:0008065 biolink:NamedThing establishment of blood-nerve barrier The establishment of the barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl establishment of blood/nerve barrier biological_process owl:Class GO:0070589 biolink:NamedThing cellular component macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule that is destined to form part of a specific cellular component. tmpzr1t_l9r_go_relaxed.owl cellular component macromolecule biosynthesis mah 2009-04-28T11:01:25Z biological_process owl:Class GO:0042019 biolink:NamedThing interleukin-23 binding Binding to interleukin-23. tmpzr1t_l9r_go_relaxed.owl IL-23 binding molecular_function owl:Class GO:0048756 biolink:NamedThing sieve cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a sieve cell. A sieve cell is a type of sieve element that has relatively undifferentiated sieve areas (with narrow pores). The sieve areas are rather uniform in structure on all walls; that is, there are no sieve plates. Typical of gymnosperms and lower vascular plants. The sieve element is the cell in the phloem tissue concerned with mainly longitudinal conduction of food materials. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060228 biolink:NamedThing phosphatidylcholine-sterol O-acyltransferase activator activity Increases the activity of phosphatidylcholine-sterol O-acyltransferase, an enzyme that converts cholesterol and phosphatidylcholine (lecithins) to cholesteryl esters and lyso-phosphatidylcholines. tmpzr1t_l9r_go_relaxed.owl LCAT activator activity molecular_function owl:Class GO:0005344 biolink:NamedThing oxygen carrier activity Binding to oxygen and delivering it to an acceptor molecule or a specific location. tmpzr1t_l9r_go_relaxed.owl hemocyanin|hemerythrin|oxygen-carrying|globin https://github.com/geneontology/go-ontology/issues/17399 GO:0015033 molecular_function owl:Class GO:0021950 biolink:NamedThing chemorepulsion involved in precerebellar neuron migration The creation and reception of signals that repel a precerebellar neuron as a component of the process of tangential migration. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis involved in precerebellar neuron migration biological_process owl:Class GO:0043846 biolink:NamedThing DNA polymerase III, clamp loader complex A heptamer that includes the tau and gamma products of the dnaX gene and the chi/psi subcomplex. Confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands. tmpzr1t_l9r_go_relaxed.owl DNA polymerase III, DnaX subcomplex|clamp loader complex|DNA polymerase III, DnaX complex cellular_component owl:Class GO:0090014 biolink:NamedThing leaflet formation The developmental process pertaining to the initial formation of a leaflet from unspecified parts. A leaflet is one of the ultimate segments of a compound leaf. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T11:05:37Z biological_process owl:Class GO:0009410 biolink:NamedThing response to xenobiotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a xenobiotic, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. tmpzr1t_l9r_go_relaxed.owl drug resistance|drug susceptibility/resistance|response to drug https://github.com/geneontology/go-ontology/issues/19460 GO:0042493|GO:0017104|GO:0017035 biological_process owl:Class GO:0099007 biolink:NamedThing extrinsic component of presynaptic endosome membrane The component of the presynaptic endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016062 biolink:NamedThing adaptation of rhodopsin mediated signaling The process in which a rhodopsin-mediated signaling pathway is adjusted to modulate the sensitivity and response of a visual system to light stimuli (that might vary over more than 6 magnitudes in intensity) without response saturation. tmpzr1t_l9r_go_relaxed.owl adaptation of rhodopsin mediated signalling biological_process owl:Class GO:0009331 biolink:NamedThing glycerol-3-phosphate dehydrogenase complex An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031604 biolink:NamedThing nuclear proteasome core complex, alpha-subunit complex The subunits forming the outer ring of the core complex of a proteasome located in the nucleus of a cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0006035 biolink:NamedThing cuticle chitin biosynthetic process The chemical reactions and pathways resulting in the formation of cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles. tmpzr1t_l9r_go_relaxed.owl cuticle chitin anabolism|cuticle chitin biosynthesis|cuticle chitin formation|cuticle chitin synthesis biological_process owl:Class GO:0033686 biolink:NamedThing positive regulation of luteinizing hormone secretion Any process that activates or increases the frequency, rate or extent of the regulated release of luteinizing hormone. tmpzr1t_l9r_go_relaxed.owl activation of luteinizing hormone secretion|up-regulation of luteinizing hormone secretion|upregulation of luteinizing hormone secretion|stimulation of luteinizing hormone secretion|up regulation of luteinizing hormone secretion biological_process owl:Class GO:0035201 biolink:NamedThing leg disc anterior/posterior lineage restriction Formation and/or maintenance of a lineage boundary between anterior and posterior compartments of the leg disc that cells cannot cross, thus separating the populations of cells in each compartment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003004 biolink:NamedThing follicular fluid formation in ovarian follicle antrum involved in distinct antral spaces stage The menstrual cycle process in which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed as part of the antral spaces stage of oogenesis. tmpzr1t_l9r_go_relaxed.owl follicular fluid formation in ovarian follicle antrum during distinct antral spaces stage biological_process owl:Class GO:0003335 biolink:NamedThing corneocyte development The process whose specific outcome is the progression of the corneocyte over time, from its formation to the mature structure. A corneocyte is the last stage of development of a keratinocyte where the keratinocyte flattens, loses its nucleus and eventually delaminates from the epidermis. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-24T09:01:02Z biological_process owl:Class GO:0001548 biolink:NamedThing follicular fluid formation in ovarian follicle antrum The menstrual cycle process that results in the formation of one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells during the various stages of oogenesis. tmpzr1t_l9r_go_relaxed.owl ovarian follicle antrum/follicular fluid biosynthesis|ovarian follicle antrum/follicular fluid formation biological_process owl:Class GO:0001769 biolink:NamedThing establishment of B cell polarity The directed orientation of B cell signaling molecules and associated membrane rafts towards a chemokine gradient of a contact point with an antigen displaying cell. tmpzr1t_l9r_go_relaxed.owl establishment of B-cell polarity|establishment of B-lymphocyte polarity|B cell polarization|B lymphocyte polarization|establishment of B lymphocyte polarity|B-cell polarization Note that 'antigen displaying cell' in this term encompasses cell types such as follicular dendritic cells which display the unprocessed antigens of a B cell, leading to activation of the B cells and antigen uptake and processing by the B cells. biological_process owl:Class GO:0061563 biolink:NamedThing trigeminal ganglion structural organization The process that contributes to creating the structural organization of the trigeminal ganglion This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl trigeminal ganglia organization dph 2013-07-10T09:12:11Z biological_process owl:Class GO:0070289 biolink:NamedThing extracellular ferritin complex A ferritin complex located in the extracellular region. Extracellular ferritin complexes contain L (light) chains but few or no H (heavy) chains. tmpzr1t_l9r_go_relaxed.owl serum ferritin complex cellular_component owl:Class GO:0031395 biolink:NamedThing bursicon neuropeptide hormone complex A neuropeptide hormone secreted by the central nervous system of insects that stimulates the tanning and sclerotization of the adult cuticle following eclosion. The active hormone consists of an obligate heterodimer of the alpha and beta subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003148 biolink:NamedThing outflow tract septum morphogenesis The process in which the anatomical structures of the outflow tract septum are generated and organized. The outflow tract septum is a partition in the outflow tract. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-22T07:51:01Z biological_process owl:Class GO:0060087 biolink:NamedThing relaxation of vascular associated smooth muscle A negative regulation of smooth muscle contraction resulting in relaxation of vascular smooth muscle. The relaxation is mediated by a decrease in the phosphorylation state of myosin light chain. This can be achieved by removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases leading to a decrease myosin light chain kinase activity, and through calcium-independent pathways leading to a increase in myosin light chain phosphatase activity. tmpzr1t_l9r_go_relaxed.owl relaxation of vascular smooth muscle|negative regulation of relaxation of vascular smooth muscle|positive regulation of relaxation of vascular smooth muscle|vascular smooth muscle relaxation|regulation of relaxation of vascular smooth muscle GO:1905659|GO:1905657|GO:1905658 biological_process owl:Class GO:0036132 biolink:NamedThing 13-prostaglandin reductase activity Catalysis of the reaction: 15-keto-prostaglandin + NAD(P)H + H+ -> 13,14-dihydro-15-keto-prostaglandin + NAD(P)+. This reaction is the reduction of 15-keto-prostaglandin. tmpzr1t_l9r_go_relaxed.owl 15-oxo-delta13-prostaglandin reductase activity|prostaglandin 13-reductase activity|delta13-15-ketoprostaglandin reductase activity|15-oxoprostaglandin 13-reductase activity|15-ketoprostaglandin delta13-reductase activity|prostaglandin delta13-reductase activity EC:1.3.1.48|KEGG_REACTION:R04557|KEGG_REACTION:R04556|Reactome:R-HSA-2161692 Note that this is the reverse of the reaction described in '15-oxoprostaglandin 13-oxidase activity ; GO:0047522'. bf 2012-03-05T10:42:22Z molecular_function owl:Class GO:0000472 biolink:NamedThing endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage between the 5'-External Transcribed Spacer (5'-ETS) and the 5' end of the SSU-rRNA of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. tmpzr1t_l9r_go_relaxed.owl endonucleolytic cleavage at A1 biological_process owl:Class GO:0034974 biolink:NamedThing Swi5-Swi2 complex A protein complex involved that contains proteins known in Schizosaccharomyces as Swi5 monomers and Swi2, and is involved in mating type switching. tmpzr1t_l9r_go_relaxed.owl Swi5 complex Note that this term refers to Schizosaccharomyces pombe Swi5 and Swi2, which should not be confused with the unrelated Saccharomyces Swi5p and Swi2p. cellular_component owl:Class GO:1905014 biolink:NamedThing positive regulation of 'de novo' NAD biosynthetic process from tryptophan Any process that activates or increases the frequency, rate or extent of 'de novo' NAD biosynthetic process from tryptophan. tmpzr1t_l9r_go_relaxed.owl up-regulation of 'de novo' NAD biosynthetic process from tryptophan|upregulation of 'de novo' NAD biosynthetic process from tryptophan|up-regulation of de novo NAD biosynthetic process from tryptophan|up regulation of de novo NAD biosynthetic process from tryptophan|up regulation of 'de novo' NAD biosynthetic process from tryptophan|activation of 'de novo' NAD biosynthetic process from tryptophan|activation of de novo NAD biosynthetic process from tryptophan|upregulation of de novo NAD biosynthetic process from tryptophan|positive regulation of de novo NAD biosynthetic process from tryptophan bf 2016-03-03T10:01:10Z biological_process owl:Class GO:0019044 biolink:NamedThing maintenance of viral latency The perpetuation of a latent state, generally by repressing the viruses own lytic genes expression and ensuring expression of viral genes which function to keep the viral genome from being detected by the host defense mechanisms. tmpzr1t_l9r_go_relaxed.owl provirus maintenance|latent virus maintenance|prophage maintenance GO:0032360|GO:0075716 biological_process owl:Class GO:0044479 biolink:NamedThing envenomation resulting in modulation of mast cell degranulation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of blood mast cell degranulation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:51:51Z biological_process owl:Class GO:0050885 biolink:NamedThing neuromuscular process controlling balance Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors. tmpzr1t_l9r_go_relaxed.owl regulation of balance biological_process owl:Class GO:0016282 biolink:NamedThing eukaryotic 43S preinitiation complex A protein complex composed of the 40S ribosomal subunit plus eIF1A, eIF3, and eIF2-GTP-bound methionyl-initiator methionine tRNA. tmpzr1t_l9r_go_relaxed.owl eukaryotic 43S pre-initiation complex cellular_component owl:Class GO:0022627 biolink:NamedThing cytosolic small ribosomal subunit The small subunit of a ribosome located in the cytosol. tmpzr1t_l9r_go_relaxed.owl prokaryotic small ribosomal subunit|40S ribosomal subunit|eukaryotic ribosomal SSU|30S ribosomal subunit GO:0005843|GO:0030873|GO:0009283|GO:0030499 cellular_component owl:Class GO:2000952 biolink:NamedThing negative regulation of xyloglucan catabolic process Any process that stops, prevents or reduces the frequency, rate or extent of xyloglucan catabolic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of xyloglucan catabolism tt 2011-08-01T02:20:21Z biological_process owl:Class GO:0070942 biolink:NamedThing neutrophil mediated cytotoxicity The directed killing of a target cell by a neutrophil. tmpzr1t_l9r_go_relaxed.owl neutrophil mediated cell killing mah 2009-10-01T01:49:30Z biological_process owl:Class GO:0071910 biolink:NamedThing determination of liver left/right asymmetry Determination of the asymmetric location of the liver with respect to the left and right halves of the organism. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-22T10:26:47Z biological_process owl:Class GO:0060791 biolink:NamedThing sebaceous gland placode formation The developmental process in which a sebaceous gland placode forms. A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:23:09Z biological_process owl:Class GO:0061102 biolink:NamedThing stomach neuroendocrine cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuroendocrine cell of the stomach epithelium. tmpzr1t_l9r_go_relaxed.owl gastric neuroendocrine cell differentiation dph 2010-04-28T09:47:07Z biological_process owl:Class GO:0043272 biolink:NamedThing ethylene biosynthesis involved in jasmonic acid and ethylene-dependent systemic resistance The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), occurring as part of the process of jasmonic acid and ethylene-dependent systemic resistance. tmpzr1t_l9r_go_relaxed.owl ethylene formation during jasmonic acid and ethylene-dependent systemic resistance|ethylene synthesis during jasmonic acid and ethylene-dependent systemic resistance|ethylene anabolism during jasmonic acid and ethylene-dependent systemic resistance|ethylene biosynthetic process during jasmonic acid and ethylene-dependent systemic resistance biological_process owl:Class GO:0000938 biolink:NamedThing GARP complex A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles. tmpzr1t_l9r_go_relaxed.owl VFT tethering complex|Golgi associated retrograde protein complex|Vps fifty three tethering complex cellular_component owl:Class GO:0016027 biolink:NamedThing inaD signaling complex A complex of proteins that are involved in phototransduction and attached to the transient receptor potential (TRP) channel. The protein connections are mediated through inaD. tmpzr1t_l9r_go_relaxed.owl inaD signalling complex cellular_component owl:Class GO:1901208 biolink:NamedThing negative regulation of heart looping Any process that stops, prevents or reduces the frequency, rate or extent of heart looping. tmpzr1t_l9r_go_relaxed.owl down-regulation of heart looping|negative regulation of cardiac looping|down regulation of heart looping|down-regulation of cardiac looping|inhibition of heart looping|downregulation of heart looping|downregulation of cardiac looping|down regulation of cardiac looping|inhibition of cardiac looping rl 2012-07-31T07:16:10Z biological_process owl:Class GO:0000811 biolink:NamedThing GINS complex A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks. tmpzr1t_l9r_go_relaxed.owl Go, Ichi, Ni and San complex cellular_component owl:Class GO:0051936 biolink:NamedThing gamma-aminobutyric acid reuptake The uptake of gamma-aminobutyric acid (GABA, 4-aminobutyrate) by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyric acid import into neuron|GABA recycling|gamma-aminobutyric acid uptake during transmission of nerve impulse|GABA import into glial cell|GABA reuptake|gamma-aminobutyric acid import into glial cell|GABA import into neuron|gamma-aminobutyric acid recycling|gamma-aminobutyric acid uptake involved in synaptic transmission biological_process owl:Class GO:0031615 biolink:NamedThing cytosolic proteasome regulatory particle, lid subcomplex The subcomplex of the cytosolic proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1902280 biolink:NamedThing regulation of RNA helicase activity Any process that modulates the frequency, rate or extent of ATP-dependent RNA helicase activity. tmpzr1t_l9r_go_relaxed.owl regulation of ATP-dependent RNA helicase activity rb 2013-07-03T18:05:19Z biological_process owl:Class GO:0048452 biolink:NamedThing petal structural organization The process that contributes to the act of creating the structural organization of the petal. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl petal structural organisation GO:0048420 biological_process owl:Class GO:0098510 biolink:NamedThing sensory perception of high humidity The series of events required for an organism to detect high environmental humidity, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T13:57:27Z biological_process owl:Class GO:0009382 biolink:NamedThing imidazoleglycerol-phosphate synthase complex Complex that possesses imidazoleglycerol-phosphate synthase activity. tmpzr1t_l9r_go_relaxed.owl imidazoleglycerol phosphate synthase complex See also the molecular function term 'imidazoleglycerol-phosphate synthase activity ; GO:0000107'. cellular_component owl:Class GO:0009833 biolink:NamedThing plant-type primary cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl cellulose and pectin-containing primary cell wall biogenesis|primary cell wall biogenesis|primary cell wall formation|primary cell wall biosynthetic process|primary cell wall anabolism|primary cell wall synthesis biological_process owl:Class GO:0048803 biolink:NamedThing imaginal disc-derived male genitalia morphogenesis The process in which the anatomical structures of male genitalia are generated and organized from the genital imaginal disc. tmpzr1t_l9r_go_relaxed.owl male genital morphogenesis biological_process owl:Class GO:0003042 biolink:NamedThing vasoconstriction of artery involved in carotid body chemoreceptor response to lowering of systemic arterial blood pressure A process that is triggered by carotid body-vasomotor excitation and results in a decrease in the diameter of an artery during the chemoreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl vasoconstriction of artery during carotid body chemoreceptor response to lowering of systemic arterial blood pressure biological_process owl:Class GO:0060797 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in primary germ layer cell fate commitment A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to an unspecified cell adopting a mesoderm fate. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in primary germ layer cell fate commitment dph 2009-08-04T03:41:44Z biological_process owl:Class GO:0048921 biolink:NamedThing posterior lateral line neuromast cupula development The process whose specific outcome is the progression of the posterior lateral line neuromast cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072488 biolink:NamedThing ammonium transmembrane transport The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+. tmpzr1t_l9r_go_relaxed.owl ammonia transport|ammonium membrane transport|ammonium transport https://github.com/geneontology/go-ontology/issues/22228 Note that this term is not intended for use in annotating lateral movement within membranes. mah 2010-12-10T10:29:57Z GO:0015696 biological_process owl:Class GO:0097014 biolink:NamedThing ciliary plasm All of the contents of a cilium, excluding the plasma membrane surrounding the cilium. tmpzr1t_l9r_go_relaxed.owl cilium cytoplasm|microtubule-based flagellum matrix|ciliary cytoplasm|microtubule-based flagellum cytoplasm|cilium plasm|microtubule-based flagellar matrix|microtubule-based flagellar cytoplasm|cilial cytoplasm Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm". pr 2011-03-23T01:52:31Z cellular_component owl:Class GO:0140545 biolink:NamedThing protein disaggregase activity An ATP-dependent molecular chaperone activity that mediates the solubilization of ordered protein aggregates. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19173 pg 2020-11-10T16:57:19Z molecular_function owl:Class GO:0072576 biolink:NamedThing liver morphogenesis The process in which the anatomical structures of the liver are generated and organized. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-02T03:41:30Z biological_process owl:Class GO:0030233 biolink:NamedThing deoxynucleotide transmembrane transporter activity Catalyzes transport of all four deoxy (d) NDPs, and, less efficiently, the corresponding dNTPs, in exchange for dNDPs, ADP, or ATP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000438 biolink:NamedThing core TFIIH complex portion of holo TFIIH complex The core TFIIH complex when it is part of the general transcription factor TFIIH. tmpzr1t_l9r_go_relaxed.owl SSL2-core TFIIH complex portion of holo TFIIH complex GO:0000443 cellular_component owl:Class GO:0009853 biolink:NamedThing photorespiration A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. tmpzr1t_l9r_go_relaxed.owl photorespiratory pathway Wikipedia:Photorespiration|MetaCyc:PWY-181 biological_process owl:Class GO:0090389 biolink:NamedThing phagosome-lysosome fusion involved in apoptotic cell clearance The creation of a phagolysosome from a phagosome and a lysosome as a part of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:57:39Z biological_process owl:Class GO:0090387 biolink:NamedThing phagolysosome assembly involved in apoptotic cell clearance The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:57:39Z biological_process owl:Class GO:0010730 biolink:NamedThing negative regulation of hydrogen peroxide biosynthetic process Any process that decreases the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of hydrogen peroxide biosynthesis biological_process owl:Class GO:0005831 biolink:NamedThing steroid hormone aporeceptor complex A protein complex consisting of a steroid receptor associated with nonreceptor proteins, minimally a dimer of Hsp90 and a monomer of hsp56/FKBP59; forms in the absence of bound ligand. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061237 biolink:NamedThing convergent extension involved in mesonephric nephron morphogenesis The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron in the mesonephros. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T03:02:44Z biological_process owl:Class GO:0010434 biolink:NamedThing bract formation The process that gives rise to a bract. This process pertains to the initial formation of a structure from unspecified parts. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045276 biolink:NamedThing plasma membrane respiratory chain complex III A part of the respiratory chain located in the plasma membrane, containing about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1. Examples of this component are found in bacterial species. tmpzr1t_l9r_go_relaxed.owl ubiquinol-cytochrome c oxidoreductase complex|respiratory chain complex III|plasma membrane coenzyme Q-cytochrome c reductase complex|plasma membrane ubiquinol-cytochrome-c reductase complex|ubiquinol-cytochrome-c reductase complex|plasma membrane cytochrome bc1 complex|plasma membrane coenzyme Q-cytochrome c oxidoreductase complex GO:0045286 cellular_component owl:Class GO:0060374 biolink:NamedThing mast cell differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010996 biolink:NamedThing response to auditory stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auditory stimulus. tmpzr1t_l9r_go_relaxed.owl response to sound|response to sound stimulus tb 2009-06-10T11:09:38Z biological_process owl:Class GO:0042890 biolink:NamedThing 3-phenylpropionic acid transmembrane transporter activity Enables the transfer of 3-phenylpropionic acid from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl hydrocinnamic acid transporter activity|HCA transporter activity|3-phenylpropionate acid transporter activity molecular_function owl:Class GO:0035472 biolink:NamedThing choriogonadotropin hormone receptor activity Combining with the choriogonadotropin hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl chorio-gonadotrophin receptor activity|CG receptor activity|chorionic gonadotropin hormone receptor bf 2010-04-22T04:49:57Z molecular_function owl:Class GO:2001090 biolink:NamedThing maltotriulose transport The directed movement of a maltotriuloseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T01:44:15Z biological_process owl:Class GO:0006388 biolink:NamedThing tRNA splicing, via endonucleolytic cleavage and ligation Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. tmpzr1t_l9r_go_relaxed.owl tRNA-Y splicing Note that while typically associated with tRNA splicing, splicing via endonucleolytic cleavages and subsequent ligation of the free exon ends is known to be used for some non-tRNA substrates, e.g. HAC1 (YFL031W) in S. cerevisiae and an intron in the 23S rRNA of the Archaeal species Desulfurococcus mobilis. biological_process owl:Class GO:0042588 biolink:NamedThing zymogen granule A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048773 biolink:NamedThing erythrophore differentiation The process in which a relatively unspecialized cell acquires the specialized features of an erythrophore cell. Erythrophores are pigment cells derived from the neural crest. They contain pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives them an orange to red appearance. tmpzr1t_l9r_go_relaxed.owl erythrophore cell differentiation biological_process owl:Class GO:0022038 biolink:NamedThing corpus callosum development The process whose specific outcome is the progression of the corpus callosum over time, from its formation to the mature structure. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provide communication between the right and left cerebral hemispheres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060722 biolink:NamedThing cell proliferation involved in embryonic placenta development The multiplication or reproduction of cells, resulting in the expansion of the population in the embryonic placenta. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-12T12:46:04Z biological_process owl:Class GO:0015768 biolink:NamedThing maltose transport The directed movement of maltose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000002 biolink:NamedThing mitochondrial genome maintenance The maintenance of the structure and integrity of the mitochondrial genome; includes replication and segregation of the mitochondrial chromosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051867 biolink:NamedThing general adaptation syndrome, behavioral process The set of behavioral processes that occur as part of the general adaptation syndrome, the response of the body to a strong, stressful stimulus. tmpzr1t_l9r_go_relaxed.owl behavioural process during general adaptation syndrome|general adaptation syndrome, behavioral response|general adaptation syndrome, behavioural process|behavioural response during general adaptation syndrome|general adaptation syndrome, behavioural response|behavioral process during general adaptation syndrome|behavioral response during general adaptation syndrome biological_process owl:Class GO:0010287 biolink:NamedThing plastoglobule A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. tmpzr1t_l9r_go_relaxed.owl PG|plastoglobuli GO:0010502 cellular_component owl:Class GO:0099560 biolink:NamedThing synaptic membrane adhesion The attachment of presynaptic membrane to postsynaptic membrane via adhesion molecules that are at least partially embedded in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl synapse adhesion between pre- and post-synapse biological_process owl:Class GO:0021758 biolink:NamedThing putamen development The progression of the putamen over time from its initial formation until its mature state. The putamen is the lens-shaped basal ganglion involved with control of voluntary movement in the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044294 biolink:NamedThing dendritic growth cone The migrating motile tip of a growing nerve cell dendrite. tmpzr1t_l9r_go_relaxed.owl dendrite growth cone NIF_Subcellular:sao1594955670 jl 2010-02-04T03:45:27Z cellular_component owl:Class GO:0044177 biolink:NamedThing host cell Golgi apparatus A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. tmpzr1t_l9r_go_relaxed.owl host Golgi apparatus jl 2009-09-04T03:14:38Z cellular_component owl:Class GO:1904756 biolink:NamedThing negative regulation of gut granule assembly Any process that stops, prevents or reduces the frequency, rate or extent of gut granule assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of gut granule formation|negative regulation of gut granule biogenesis|down regulation of gut granule biogenesis|down regulation of gut granule assembly|downregulation of gut granule biogenesis|inhibition of gut granule biogenesis|down regulation of gut granule formation|down-regulation of gut granule assembly|negative regulation of gut granule formation|down-regulation of gut granule biogenesis|inhibition of gut granule assembly|inhibition of gut granule formation|down-regulation of gut granule formation|downregulation of gut granule assembly ah 2015-10-21T08:43:51Z biological_process owl:Class GO:1990071 biolink:NamedThing TRAPPII protein complex A complex that mediates intra-Golgi traffic, Golgi exit, endosome-to-Golgi traffic, and the trafficking of autophagy proteins from Golgi to the phagophore assembly site. Binds to a component of the COPI coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Tca17, Trs20, Trs23, Trs31, Trs33, Trs65, Trs120, Trs130. The whole complex is thought to dimerize with itself. tmpzr1t_l9r_go_relaxed.owl bhm 2013-03-28T14:24:08Z cellular_component owl:Class GO:1900261 biolink:NamedThing positive regulation of RNA-directed 5'-3' RNA polymerase activity Any process that activates or increases the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of RNA synthetase activity|upregulation of RNA-dependent RNA polymerase activity|up regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|upregulation of PB1 proteins|upregulation of RDRP|positive regulation of PB1 proteins|positive regulation of RNA-dependent RNA polymerase activity|up regulation of RNA-dependent RNA replicase activity|upregulation of transcriptase|activation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|up regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|up-regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|positive regulation of transcriptase|up-regulation of phage f2 replicase|activation of PB2 proteins|up regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|up regulation of ribonucleic replicase activity|upregulation of RNA replicase activity|positive regulation of ribonucleic synthetase activity|upregulation of RNA synthetase activity|up regulation of Q-beta replicase activity|activation of transcriptase|upregulation of RNA-dependent ribonucleate nucleotidyltransferase activity|upregulation of 3D polymerase activity|positive regulation of RNA-directed RNA polymerase activity|up regulation of RNA replicase activity|activation of 3D polymerase activity|activation of RNA-directed RNA polymerase activity|positive regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|up regulation of RNA-dependent RNA polymerase activity|up regulation of 3D polymerase activity|positive regulation of ribonucleic acid replicase activity|activation of phage f2 replicase|up-regulation of transcriptase|up-regulation of RNA synthetase activity|activation of RNA replicase activity|activation of Q-beta replicase activity|activation of RNA-dependent ribonucleate nucleotidyltransferase activity|activation of polymerase L|upregulation of ribonucleic acid replicase activity|up-regulation of ribonucleic replicase activity|activation of RNA-dependent RNA polymerase activity|up regulation of polymerase L|positive regulation of RNA-dependent ribonucleate nucleotidyltransferase activity|up regulation of RNA nucleotidyltransferase (RNA-directed) activity|positive regulation of polymerase L|up-regulation of RNA-dependent RNA replicase activity|upregulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|up-regulation of PB1 proteins|upregulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|positive regulation of RNA nucleotidyltransferase (RNA-directed) activity|activation of PB1 proteins|up regulation of PB2 proteins|upregulation of RNA-directed RNA polymerase activity|activation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|upregulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|positive regulation of RDRP|up regulation of PB1 proteins|upregulation of polymerase L|up-regulation of RNA-dependent RNA polymerase activity|up-regulation of Q-beta replicase activity|up regulation of phage f2 replicase|up-regulation of ribonucleic acid replicase activity|up regulation of transcriptase|upregulation of RNA-dependent RNA replicase activity|activation of RDRP|up-regulation of RDRP|upregulation of PB2 proteins|positive regulation of RNA replicase activity|positive regulation of 3D polymerase activity|activation of RNA synthetase activity|upregulation of phage f2 replicase|positive regulation of phage f2 replicase|up-regulation of RNA-directed RNA polymerase activity|up regulation of ribonucleic acid replicase activity|upregulation of Q-beta replicase activity|activation of ribonucleic replicase activity|up regulation of ribonucleic synthetase activity|activation of RNA nucleotidyltransferase (RNA-directed) activity|activation of ribonucleic acid-dependent ribonucleic acid polymerase activity|up-regulation of RNA nucleotidyltransferase (RNA-directed) activity|upregulation of ribonucleic replicase activity|up-regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|positive regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|up regulation of RNA-directed RNA polymerase activity|up regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity|upregulation of RNA nucleotidyltransferase (RNA-directed) activity|activation of ribonucleic acid replicase activity|up-regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|positive regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)|up-regulation of polymerase L|activation of RNA-dependent RNA replicase activity|positive regulation of RNA-dependent RNA replicase activity|up-regulation of ribonucleic synthetase activity|positive regulation of RNA synthetase activity|up-regulation of 3D polymerase activity|up-regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity|up-regulation of RNA replicase activity|activation of ribonucleic synthetase activity|upregulation of ribonucleic synthetase activity|up-regulation of PB2 proteins|positive regulation of Q-beta replicase activity|up regulation of RDRP|positive regulation of ribonucleic replicase activity|positive regulation of PB2 proteins tb 2012-04-03T11:02:11Z biological_process owl:Class GO:0044823 biolink:NamedThing retroviral integrase activity Catalysis of the covalent insertion of double-stranded retroviral DNA into host DNA. Proceeds by an endonucleolytic cleavage at each 3'-OH extremity of the viral genome, named 3'-processing, followed by a strand transfer reaction leading to the insertion of the processed viral DNA into the target DNA by a trans-esterification mechanism. tmpzr1t_l9r_go_relaxed.owl jl 2014-02-04T14:09:34Z molecular_function owl:Class GO:0060036 biolink:NamedThing notochord cell vacuolation The assembly and arrangement of a vacuole within a cell of the notochord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001018 biolink:NamedThing mitochondrial promoter sequence-specific DNA binding Binding to a DNA region that controls the transcription of the mitochondrial DNA. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA polymerase core promoter sequence-specific DNA binding|mitochondrial light strand promoter sense binding|LSPas binding|LSP non-coding strand binding|mitochondrial RNA polymerase regulatory region DNA binding|LSP coding strand binding|HSPs binding|mitochondrial proximal promoter sequence-specific DNA binding|mitochondrial heavy strand promoter anti-sense binding|HSP coding strand binding|LSPs binding|mitochondrial RNA polymerase regulatory region sequence-specific DNA binding|mitochondrial light strand promoter anti-sense binding|HSPas binding|mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding|HSP non-coding strand binding|mitochondrial heavy strand promoter sense binding krc 2010-08-25T04:11:49Z GO:0070362|GO:0070363|GO:0070361|GO:0001044|GO:0070364|GO:0000997|GO:0001045 molecular_function owl:Class GO:0090248 biolink:NamedThing cell migration involved in somitogenic axis elongation Any process involved in the controlled self-propelled movement of a cell that contributes to somitogenic axis elongation. tmpzr1t_l9r_go_relaxed.owl cell motility involved in somitogenic axis elongation https://github.com/geneontology/go-annotation/issues/2040 tb 2010-01-22T11:13:59Z GO:0090247 biological_process owl:Class GO:0042934 biolink:NamedThing achromobactin transmembrane transporter activity Enables the transfer of achromobactin, a citrate siderophore, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl achromobactin transporter activity molecular_function owl:Class GO:0031521 biolink:NamedThing spitzenkorper Structure within the hyphal tip of filamentous fungi that acts as an organizing center for hyphal tip growth; may function to supply vesicles to the elongating tip and/or to organize cytoskeletal microfilaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904691 biolink:NamedThing negative regulation of type B pancreatic cell proliferation Any process that stops, prevents or reduces the frequency, rate or extent of type B pancreatic cell proliferation. tmpzr1t_l9r_go_relaxed.owl downregulation of type B pancreatic cell proliferation|inhibition of type B pancreatic cell proliferation|inhibition of pancreatic beta cell proliferation|down regulation of pancreatic beta cell proliferation|inhibition of pancreatic B cell proliferation|down regulation of pancreatic B cell proliferation|down regulation of type B pancreatic cell proliferation|negative regulation of pancreatic B cell proliferation|negative regulation of pancreatic beta cell proliferation|down-regulation of pancreatic B cell proliferation|downregulation of pancreatic beta cell proliferation|downregulation of pancreatic B cell proliferation|down-regulation of type B pancreatic cell proliferation|down-regulation of pancreatic beta cell proliferation sl 2015-09-25T15:23:38Z biological_process owl:Class GO:0044342 biolink:NamedThing type B pancreatic cell proliferation The multiplication or reproduction of pancreatic B cells, resulting in the expansion of an pancreatic B cell population. Pancreatic B cell are cells of the pancreas that secrete insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic beta cell proliferation|pancreatic B cell proliferation jl 2010-08-25T01:44:51Z biological_process owl:Class GO:0021978 biolink:NamedThing telencephalon regionalization The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021973 biolink:NamedThing corticospinal neuron axon decussation The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed to cross the midline to the contralateral side. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001112 biolink:NamedThing DNA-templated transcription open complex formation Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble. tmpzr1t_l9r_go_relaxed.owl transcriptional open complex formation at bacterial-type RNA polymerase promoter|DNA-dependent transcriptional open complex formation|transcription open complex formation at bacterial-type RNA polymerase promoter|DNA-templated transcriptional open complex formation|promoter melting krc 2010-12-02T02:15:04Z GO:0001127 biological_process owl:Class GO:0060503 biolink:NamedThing bud dilation involved in lung branching The process in which a bud in the lung increases radially. tmpzr1t_l9r_go_relaxed.owl bud expansion biological_process owl:Class GO:0005631 biolink:NamedThing chitosan layer of spore wall The second outermost layer of the spore wall, as described in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070545 biolink:NamedThing PeBoW complex A protein complex that is involved in coordinating ribosome biogenesis with cell cycle progression. In human, it is composed of Pes1, Bop1, and WDR12; in Saccharomyces the proteins are known as Nop7p, Erb1 and Ytm1 respectively. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060672 biolink:NamedThing epithelial cell morphogenesis involved in placental branching The change in form (cell shape and size) that occurs when a trophoblast cell elongates to contribute to the branching of the placenta. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T12:44:52Z biological_process owl:Class GO:0001072 biolink:NamedThing transcription antitermination factor activity, RNA binding Binds to RNA, typically within the nascent RNA transcript, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind the nascent RNA include the lambda N protein and the HIV-1 tat protein. tmpzr1t_l9r_go_relaxed.owl RNA binding transcription antitermination factor activity krc 2010-10-21T04:48:17Z molecular_function owl:Class GO:0021861 biolink:NamedThing forebrain radial glial cell differentiation The process in which neuroepithelial cells of the neural tube give rise to radial glial cells, specialized bipotential progenitors cells of the forebrain. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl radial glial cell differentiation in forebrain biological_process owl:Class GO:0071361 biolink:NamedThing cellular response to ethanol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:02:59Z biological_process owl:Class GO:0035846 biolink:NamedThing oviduct epithelium development The progression of the oviduct epithelium over time from its initial formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. The oviduct epithelium is the specialized epithelium that lines the oviduct. tmpzr1t_l9r_go_relaxed.owl fallopian tube epithelium development bf 2011-05-10T10:53:05Z biological_process owl:Class GO:0086082 biolink:NamedThing cell adhesive protein binding involved in AV node cell-bundle of His cell communication Binding to a protein or protein complex that results in the connection of an AV node cell with a bundle of His cell and contributes to the communication between the two cells. tmpzr1t_l9r_go_relaxed.owl cell adhesive protein binding involved in atrioventricular node cell-bundle of His cell communication dph 2011-11-22T11:09:37Z molecular_function owl:Class GO:0120113 biolink:NamedThing cytoplasm to vacuole transport by the NVT pathway A pathway targeting soluble cytosolic proteins to the vacuole lumen. It uses a selective autophagy receptor protein Nbr1, which is an ortholog of mammalian NBR1, and is remotely related to S. cerevisiae Cvt pathway receptor protein Atg19. Similar to the Cvt pathway, the cargos transported by this pathway are hydrolases, which presumably contribute to the hydrolytic activities in the vacuole lumen. Different from the Cvt pathway, this pathway does not require the macroautophagy machinery, but instead relies on the ESCRT machinery for cargo sequestration. This pathway is observed in the fission yeast S. pombe. tmpzr1t_l9r_go_relaxed.owl protein localization by the NVT pathway|cytoplasm to vacuole targeting|protein localization by the Nbr1-mediated vacuolar targeting pathway|cytoplasm-to-vacuole targeting krc 2017-11-03T16:07:55Z biological_process owl:Class GO:1990758 biolink:NamedThing mitotic sister chromatid biorientation The mitotic cell cycle process in which sister chromatids establish stable, end-on attachments to the plus ends of microtubules emanating from opposite spindle poles, oriented such that separation can proceed. This is the final step in metaphase plate congression. tmpzr1t_l9r_go_relaxed.owl vw 2015-06-02T12:36:17Z biological_process owl:Class GO:0002882 biolink:NamedThing positive regulation of chronic inflammatory response to non-antigenic stimulus Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response to a non-antigenic stimulus. tmpzr1t_l9r_go_relaxed.owl up regulation of chronic inflammatory response to non-antigenic stimulus|upregulation of chronic inflammatory response to non-antigenic stimulus|stimulation of chronic inflammatory response to non-antigenic stimulus|activation of chronic inflammatory response to non-antigenic stimulus|up-regulation of chronic inflammatory response to non-antigenic stimulus biological_process owl:Class GO:0002545 biolink:NamedThing chronic inflammatory response to non-antigenic stimulus A chronic inflammatory response to a non-antigenic stimulus such as heat or physical trauma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004689 biolink:NamedThing phosphorylase kinase activity Catalysis of the reaction: 4 ATP + 2 phosphorylase b = 4 ADP + phosphorylase a. tmpzr1t_l9r_go_relaxed.owl glycogen phosphorylase kinase activity|phosphorylase kinase, intrinsic catalyst activity|PHK|dephosphophosphorylase kinase activity|phosphorylase kinase (phosphorylating) activity|STK17|ATP:phosphorylase-b phosphotransferase activity|phosphorylase B kinase activity Reactome:R-HSA-71541|Reactome:R-HSA-71588|MetaCyc:2.7.11.19-RXN|Reactome:R-HSA-453337|EC:2.7.11.19 GO:0008606 molecular_function owl:Class GO:0005459 biolink:NamedThing UDP-galactose transmembrane transporter activity Enables the transfer of a UDP-galactose from one side of a membrane to the other. UDP-galactose is a substance composed of galactose in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5652099|Reactome:R-HSA-735702 molecular_function owl:Class GO:0046935 biolink:NamedThing 1-phosphatidylinositol-3-kinase regulator activity Modulates the activity of the enzyme 1-phosphatidylinositol-3-kinase activity. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase, class I, regulator activity|1-phosphatidylinositol 3-kinase regulator activity See also the molecular function term '1-phosphatidylinositol-3-kinase activity ; GO:0016303'. molecular_function owl:Class GO:0021612 biolink:NamedThing facial nerve structural organization The process that contributes to the act of creating the structural organization of the facial nerve. This process pertains to the physical shaping of a rudimentary structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities. tmpzr1t_l9r_go_relaxed.owl CN VII structural organization|facial nerve structural organisation biological_process owl:Class GO:0048298 biolink:NamedThing positive regulation of isotype switching to IgA isotypes Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes. tmpzr1t_l9r_go_relaxed.owl stimulation of isotype switching to IgA isotypes|positive regulation of isotype switch recombination to IgA isotypes|positive regulation of class switching to IgA isotypes|up-regulation of isotype switching to IgA isotypes|up regulation of isotype switching to IgA isotypes|activation of isotype switching to IgA isotypes|positive regulation of class switch recombination to IgA isotypes|upregulation of isotype switching to IgA isotypes biological_process owl:Class GO:1990205 biolink:NamedThing taurine dioxygenase complex A protein complex capable of catalyzing the conversion of taurine and alpha-ketoglutarate to sulfite, aminoacetaldehyde and succinate under sulfur or cysteine starvation conditions. Its expression is repressed by the presence of sulfate or cysteine. In E. coli it is a homodimer or homotetramer of the protein TauD. tmpzr1t_l9r_go_relaxed.owl TauD complex|alpha-ketoglutarate-dependent taurine dioxygenase complex|2-aminoethanesulfonate dioxygenase complex bhm 2013-10-07T13:03:15Z cellular_component owl:Class GO:0007478 biolink:NamedThing leg disc morphogenesis The process in which the anatomical structures derived from the leg disc are generated and organized. This includes the transformation of a leg imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the leg, coxa and ventral thoracic pleura. tmpzr1t_l9r_go_relaxed.owl leg disc metamorphosis biological_process owl:Class GO:0072684 biolink:NamedThing mitochondrial tRNA 3'-trailer cleavage, endonucleolytic Endonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial endonucleolytic tRNA 3'-trailer cleavage|mitochondrial tRNA 3'-end cleavage, endonucleolytic|mitochondrial endonucleolytic tRNA 3'-end cleavage mah 2011-02-23T01:32:52Z biological_process owl:Class GO:0004741 biolink:NamedThing [pyruvate dehydrogenase (lipoamide)] phosphatase activity Catalysis of the reaction: [pyruvate dehydrogenase (lipoamide)] phosphate + H2O = [pyruvate dehydrogenase (lipoamide)] + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphopyruvate dehydrogenase phosphatase activity|pyruvate dehydrogenase (lipoamide)-phosphatase activity|pyruvate dehydrogenase (lipoamide) phosphatase activity|pyruvate dehydrogenase phosphatase activity|pyruvate dehydrogenase (lipoamide)-phosphate phosphohydrolase activity|[pyruvate dehydrogenase (lipoamide)] phosphatase, intrinsic catalyst activity Reactome:R-HSA-204169|RHEA:12669|EC:3.1.3.43|MetaCyc:3.1.3.43-RXN GO:0019906 molecular_function owl:Class GO:0044852 biolink:NamedThing nonrepetitive DNA condensation The process in which chromatin structure of nonrepetitive regions of DNA is compacted prior to and during mitosis in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl nonrepetitive DNA packaging jl 2014-07-17T14:13:23Z biological_process owl:Class GO:0016176 biolink:NamedThing superoxide-generating NADPH oxidase activator activity Increases the activity of the enzyme superoxide-generating NADPH oxidase. tmpzr1t_l9r_go_relaxed.owl neutrophil cytosol factor 2 molecular_function owl:Class GO:0000448 biolink:NamedThing cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Endonucleolytic cleavage within ITS2 between the 5.8S rRNA and the LSU-rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl cleavage in ITS2 of tricistronic rRNA transcript to separate 5.8S and LSU rRNAs (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|cleavage at C2 GO:0000490 biological_process owl:Class GO:0042685 biolink:NamedThing cardioblast cell fate specification The process in which a cell becomes capable of differentiating autonomously into a cardioblast cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090010 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in primitive streak formation A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the formation of the primitive streak. tmpzr1t_l9r_go_relaxed.owl TGFbeta signaling pathway involved in primitive streak formation|transforming growth factor beta receptor signalling pathway involved in primitive streak formation tb 2009-07-29T10:38:40Z biological_process owl:Class GO:0021682 biolink:NamedThing nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for a nerve to attain its fully functional state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006097 biolink:NamedThing glyoxylate cycle A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. tmpzr1t_l9r_go_relaxed.owl glyoxylate bypass MetaCyc:GLYOXYLATE-BYPASS|Wikipedia:Glyoxylate_cycle biological_process owl:Class GO:1905397 biolink:NamedThing activated CD8-positive, alpha-beta T cell apoptotic process Any apoptotic process in an activated CD8-positive, alpha-beta T cell. tmpzr1t_l9r_go_relaxed.owl activated CD8-positive, alpha-beta T-lymphocyte apoptotic process|activated CD8-positive, alpha-beta T lymphocyte apoptosis|activated CD8-positive, alpha-beta T cell apoptosis|activated CD8-positive, alpha-beta T-cell apoptotic process|activated CD8-positive, alpha-beta T lymphocyte apoptotic process|activated CD8-positive, alpha-beta T-cell apoptosis|activated CD8-positive, alpha-beta T-lymphocyte apoptosis pga 2016-08-25T08:09:27Z biological_process owl:Class GO:0022619 biolink:NamedThing generative cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a generative cell. The generative cell gives rise to the sperm cells in the male gametophyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032062 biolink:NamedThing positive regulation of translation in response to osmotic stress Any process that activates or increases the frequency, rate or extent of translation as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl up-regulation of translation in response to osmotic stress|stimulation of translation in response to osmotic stress|activation of translation in response to osmotic stress|upregulation of translation in response to osmotic stress|up regulation of translation in response to osmotic stress biological_process owl:Class GO:0072165 biolink:NamedThing anterior mesonephric tubule development The progression of the anterior mesonephric tubule over time, from its initial formation to the mature structure. The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:47:26Z biological_process owl:Class GO:0090029 biolink:NamedThing negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-03T10:27:04Z biological_process owl:Class GO:0005960 biolink:NamedThing glycine cleavage complex A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T. tmpzr1t_l9r_go_relaxed.owl glycine cleavage system|glycine synthase complex|glycine decarboxylase complex|glycine dehydrogenase (decarboxylating) complex|glycine dehydrogenase complex (decarboxylating) Wikipedia:Glycine_decarboxylase_complex GO:0070015|GO:0005961 cellular_component owl:Class GO:0051594 biolink:NamedThing detection of glucose The series of events in which a glucose stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl glucose sensing|glucose detection|glucose perception biological_process owl:Class GO:0035913 biolink:NamedThing ventral aorta morphogenesis The process in which the anatomical structures of the ventral aorta are generated and organized. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:24:36Z biological_process owl:Class GO:0050959 biolink:NamedThing echolocation Echolocation is the method used by some animals (e.g. bats, dolphins and some whales) to determine the location of something by measuring the time it takes for an echo to return from it. These animals emit sound waves and listen for the echo, calculating the distance to the object from the time lapse between sound emission and the echo returning. tmpzr1t_l9r_go_relaxed.owl biological sonar|perception of environment using reflected sound waves Wikipedia:Echolocation biological_process owl:Class GO:0061229 biolink:NamedThing mesonephric juxtaglomerulus cell development The process whose specific outcome is the progression of a mesonephric juxtaglomerulus cell over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:34:25Z biological_process owl:Class GO:0000222 biolink:NamedThing plasma membrane proton-transporting V-type ATPase, V0 domain The V0 domain of a proton-transporting V-type ATPase found in the plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane hydrogen ion-transporting ATPase V0 domain cellular_component owl:Class GO:0034060 biolink:NamedThing cyanelle stroma The space enclosed by the double membrane of a cyanelle. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048133 biolink:NamedThing male germ-line stem cell asymmetric division The self-renewing division of a germline stem cell in the male gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the male gametes. tmpzr1t_l9r_go_relaxed.owl male germ-line stem cell renewal biological_process owl:Class GO:0003218 biolink:NamedThing cardiac left ventricle formation The developmental process pertaining to the initial formation of a left cardiac ventricle from unspecified parts. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:54:33Z biological_process owl:Class GO:0003214 biolink:NamedThing cardiac left ventricle morphogenesis The process in which the left cardiac ventricle is generated and organized. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:50:08Z biological_process owl:Class GO:0031176 biolink:NamedThing endo-1,4-beta-xylanase activity Catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans. tmpzr1t_l9r_go_relaxed.owl beta-xylanase activity|endo-(1,4)-beta-xylanase(1,4)-beta-xylan 4-xylanohydrolase activity|beta-1,4-xylanase activity|xylanase|1,4-beta-D-xylan xylanohydrolase activity|1,4-beta-xylan xylanohydrolase activity|endo-1,4-xylanase activity|endo-1,4-beta-D-xylanase activity|beta-D-xylanase activity|endo-(1->4)-beta-xylanase(1->4)-beta-xylan 4-xylanohydrolase activity|endo-beta-1,4-xylanase activity|beta-1,4-xylan xylanohydrolase activity MetaCyc:3.2.1.8-RXN|EC:3.2.1.8 molecular_function owl:Class GO:0004751 biolink:NamedThing ribose-5-phosphate isomerase activity Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl ribose 5-phosphate epimerase activity|ribose phosphate isomerase activity|D-ribose-5-phosphate ketol-isomerase activity|phosphopentosisomerase activity|5-phosphoribose isomerase activity|D-ribose 5-phosphate isomerase activity|phosphoriboisomerase activity|D-ribose-5-phosphate aldose-ketose-isomerase activity|phosphopentoseisomerase activity EC:5.3.1.6|Reactome:R-HSA-71306|MetaCyc:RIB5PISOM-RXN|Reactome:R-HSA-177784|RHEA:14657|KEGG_REACTION:R01056|Reactome:R-HSA-5660015|Reactome:R-HSA-5660013 molecular_function owl:Class GO:1904941 biolink:NamedThing positive regulation of DNA nucleotidylexotransferase activity Any process that activates or increases the frequency, rate or extent of DNA nucleotidylexotransferase activity. tmpzr1t_l9r_go_relaxed.owl up regulation of terminal deoxynucleotide transferase activity|positive regulation of deoxyribonucleic acid nucleotidyltransferase activity|up-regulation of terminal deoxynucleotidyltransferase activity|activation of terminal transferase activity|up regulation of DNA nucleotidylexotransferase activity|up regulation of deoxyribonucleic nucleotidyltransferase activity|upregulation of deoxyribonucleic nucleotidyltransferase activity|activation of DNA nucleotidylexotransferase activity|positive regulation of TdT|up regulation of deoxyribonucleic acid nucleotidyltransferase activity|upregulation of terminal transferase activity|up regulation of terminal deoxyribonucleotidyltransferase activity|up-regulation of deoxyribonucleic acid nucleotidyltransferase activity|upregulation of terminal deoxyribonucleotidyltransferase activity|up-regulation of addase activity|up regulation of addase activity|upregulation of terminal deoxynucleotidyltransferase activity|upregulation of TdT|up-regulation of terminal transferase activity|positive regulation of terminal transferase activity|up-regulation of terminal deoxyribonucleotidyltransferase activity|up-regulation of deoxyribonucleic nucleotidyltransferase activity|up regulation of terminal transferase activity|upregulation of addase activity|up regulation of terminal addition enzyme activity|upregulation of terminal addition enzyme activity|positive regulation of terminal addition enzyme activity|activation of deoxyribonucleic nucleotidyltransferase activity|activation of TdT|up regulation of terminal deoxynucleotidyltransferase activity|upregulation of terminal deoxynucleotide transferase activity|up-regulation of DNA nucleotidylexotransferase activity|up regulation of deoxynucleotidyl terminal transferase activity|upregulation of deoxynucleotidyl terminal transferase activity|upregulation of DNA nucleotidylexotransferase activity|up-regulation of terminal addition enzyme activity|activation of terminal addition enzyme activity|up regulation of TdT|positive regulation of terminal deoxyribonucleotidyltransferase activity|positive regulation of deoxynucleotidyl terminal transferase activity|activation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|positive regulation of deoxyribonucleic nucleotidyltransferase activity|activation of terminal deoxyribonucleotidyltransferase activity|activation of deoxynucleotidyl terminal transferase activity|up regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|positive regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|upregulation of deoxyribonucleic acid nucleotidyltransferase activity|up-regulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|positive regulation of addase activity|activation of addase activity|positive regulation of terminal deoxynucleotidyltransferase activity|upregulation of nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity|activation of deoxyribonucleic acid nucleotidyltransferase activity|up-regulation of deoxynucleotidyl terminal transferase activity|up-regulation of terminal deoxynucleotide transferase activity|activation of terminal deoxynucleotidyltransferase activity|activation of terminal deoxynucleotide transferase activity|up-regulation of TdT|positive regulation of terminal deoxynucleotide transferase activity bc 2016-02-02T15:16:12Z biological_process owl:Class GO:0007279 biolink:NamedThing pole cell formation Formation of a small group of cells (pole cells) at the posterior pole of the insect blastula. They are the first cells to cellularize after the arrival of nuclei at the end of the syncytial blastula stage and are the precursors to the insect germ cells. tmpzr1t_l9r_go_relaxed.owl See also the Cell Ontology term 'pole cell ; CL:0000301'. biological_process owl:Class GO:1904670 biolink:NamedThing actin filament polymerization involved in mitotic actomyosin contractile ring assembly Any actin filament polymerization that is involved in mitotic actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-09T20:05:56Z biological_process owl:Class GO:0098550 biolink:NamedThing lumenal side of early endosome membrane The side (leaflet) of the early endosome membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl internal side of early endosome membrane|internal leaflet of early endosome membrane cellular_component owl:Class GO:0001110 biolink:NamedThing promoter clearance from RNA polymerase III promoter Any process involved in the transition from the initiation to the elongation phases of transcription by RNA polymerase III, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-01T03:08:29Z biological_process owl:Class GO:0036513 biolink:NamedThing Derlin-1 retrotranslocation complex A protein complex that functions in the retrotranslocation step of ERAD (ER-associated protein degradation), and includes at its core Derlin-1 oligomers forming a retrotranslocation channel. tmpzr1t_l9r_go_relaxed.owl Derlin-1 retrotranslocon|Derlin-1 complex|Derlin-1 retro-translocation complex|Derlin-1 protein dislocation complex|ERAD protein dislocation complex The Derlin-1 retrotranslocation complex is likely to assemble in steps, thereby containing different components at different stages of the retrotranslocation process. bf 2015-07-01T10:17:30Z cellular_component owl:Class GO:1990110 biolink:NamedThing callus formation The process by which a callus is formed at a wound site. A plant callus is a portion of plant tissue that consists of mass of undifferentiated plant cells. It consists primarily of parenchyma cells but possibly contains other cell types as the callus begins to differentiate. tmpzr1t_l9r_go_relaxed.owl tb 2013-05-29T22:02:52Z biological_process owl:Class GO:0000015 biolink:NamedThing phosphopyruvate hydratase complex A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water. tmpzr1t_l9r_go_relaxed.owl enolase complex cellular_component owl:Class GO:0008036 biolink:NamedThing diuretic hormone receptor activity Combining with a diuretic hormone and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031928 biolink:NamedThing pyridoxine transmembrane transporter activity Enables the transfer of pyridoxine from one side of a membrane to the other. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxine transporter activity molecular_function owl:Class GO:1903092 biolink:NamedThing pyridoxine transmembrane transport The process in which pyridoxine is transported across a membrane. tmpzr1t_l9r_go_relaxed.owl al 2014-06-03T10:41:26Z biological_process owl:Class GO:0120309 biolink:NamedThing cilium attachment to cell body A process that is carried out at the cellular level which results in the lateral attachment of the cilium to the cell body via the flagellar attachment zone in some trypanosomatid species. tmpzr1t_l9r_go_relaxed.owl cilial attachment to cell body|ciliary attachment to cell body|flagellar attachment to cell body|flagellum attachment to cell body krc 2021-03-23T18:01:14Z biological_process owl:Class GO:0061321 biolink:NamedThing garland nephrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a garland nephrocyte. A garland nephrocyte is an insect renal cell that filters hemolymph and forms a ring with other garland nephrocytes around the esophagus. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl garland cell differentiation dph 2010-09-24T12:28:16Z GO:0007514 biological_process owl:Class GO:0003272 biolink:NamedThing endocardial cushion formation The developmental process pertaining to the initial formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T08:53:19Z biological_process owl:Class GO:0044312 biolink:NamedThing crystalloid A transient, cytoplasmic organelle found in Plasmodium species that resembles a cytoplasmic inclusion body and whose function is poorly understood. Crystalloids form in ookinetes and disappear after ookinete-to-oocyst transformation. tmpzr1t_l9r_go_relaxed.owl jl 2010-02-18T03:58:55Z cellular_component owl:Class GO:0022622 biolink:NamedThing root system development The process whose specific outcome is the progression of the root system over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001792 biolink:NamedThing polymeric immunoglobulin receptor activity Combining with a J-chain-containing polymeric immunoglobulin of the IgA or IgM isotypes via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0001790 biolink:NamedThing polymeric immunoglobulin binding Binding to a J-chain-containing polymeric immunoglobulin of the IgA or IgM isotypes. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016256 biolink:NamedThing N-glycan processing to lysosome The modification of high-mannose N-glycans by UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase and the subsequent removal of the N-acetylglucosamine residues yielding mannose-6-P that occurs in the ER-Golgi apparatus to N-glycans destined for the lysosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043951 biolink:NamedThing negative regulation of cAMP-mediated signaling Any process which stops, prevents, or reduces the frequency, rate or extent of cAMP-mediated signaling, a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response. tmpzr1t_l9r_go_relaxed.owl negative regulation of cAMP-mediated signalling biological_process owl:Class GO:0097555 biolink:NamedThing right anterior flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It originates at the right anterior basal body, extends laterally through the cytoplasm, crosses the left anterior axoneme, and exits as a membrane-bound flagellum on the anterior right side of the cell. tmpzr1t_l9r_go_relaxed.owl right anterior cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:18:36Z cellular_component owl:Class GO:0061032 biolink:NamedThing visceral serous pericardium development The progression of the visceral serous pericardium from its formation to the mature structure. The visceral serous pericardium is the inner layer of the pericardium. tmpzr1t_l9r_go_relaxed.owl epicardium development dph 2010-02-09T09:52:49Z biological_process owl:Class GO:0060039 biolink:NamedThing pericardium development The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031911 biolink:NamedThing cytoproct Stable, specialized structure for extrusion of waste by the cell into the surrounding medium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000345 biolink:NamedThing cytosolic DNA-directed RNA polymerase complex The eubacterial DNA-directed RNA polymerase is a multisubunit complex with a core composed of the essential subunits beta-prime, beta, and two copies of alpha and a fifth nonessential subunit called omega. An additional subunit, a sigma factor, is required for promoter recognition and specificity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0015795 biolink:NamedThing sorbitol transport The directed movement of sorbitol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Sorbitol, also known as glucitol, is the hexitol derived by the reduction of the aldehyde group of glucose. tmpzr1t_l9r_go_relaxed.owl glucitol transport biological_process owl:Class GO:0033344 biolink:NamedThing cholesterol efflux The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl cholesterol export biological_process owl:Class GO:0072242 biolink:NamedThing metanephric DCT cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric distal convoluted tubule cell. tmpzr1t_l9r_go_relaxed.owl metanephric distal convoluted tubule cell fate commitment mah 2010-03-19T03:27:00Z biological_process owl:Class GO:0071936 biolink:NamedThing coreceptor activity involved in Wnt signaling pathway In cooperation with a primary Wnt receptor, initiating a change in cell activity through the Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl Wnt co-receptor activity|coreceptor activity involved in Wnt receptor signaling pathway|coreceptor activity involved in Wnt-activated signaling pathway|coreceptor activity involved in Wnt receptor signalling pathway mah 2010-09-30T03:54:34Z molecular_function owl:Class GO:0101004 biolink:NamedThing cytolytic granule membrane The lipid bilayer surrounding the cytolytic granule. tmpzr1t_l9r_go_relaxed.owl mec 2015-12-15T04:32:00Z cellular_component owl:Class GO:0097117 biolink:NamedThing guanylate kinase-associated protein clustering The clustering process in which guanylate kinase-associated proteins (GKAPs) are localized to distinct domains in the cell membrane. GKAP facilitates assembly of the post synaptic density of neurons. tmpzr1t_l9r_go_relaxed.owl GKAP clustering pr 2011-07-31T05:44:35Z biological_process owl:Class GO:0072681 biolink:NamedThing fibronectin-dependent thymocyte migration The movement of a thymocyte through distinct intrathymic niches (e.g. medulla, cortex), where it receives a unique set of developmental cues required for T-cell development, dependent on fibronectin in the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl fibronectin-dependent immature T-cell migration|fibronectin-dependent immature T-lymphocyte migration|fibronectin-dependent immature T lymphocyte migration|fibronectin-dependent thymic lymphocyte migration|fibronectin-dependent immature T cell migration mah 2011-02-22T03:53:06Z biological_process owl:Class GO:0097475 biolink:NamedThing motor neuron migration The orderly movement of a motor neuron from one site to another. A motor neuron is an efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement. tmpzr1t_l9r_go_relaxed.owl pr 2013-04-23T13:00:46Z biological_process owl:Class GO:0051422 biolink:NamedThing negative regulation of endo-1,4-beta-xylanase activity Any process that stops or reduces the rate of endo-(1->4)-beta-xylanase activity, the catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans. tmpzr1t_l9r_go_relaxed.owl endo-1,4-beta-xylanase inhibitor|xylanase inhibitor|inhibition of endo-1,4-beta-xylanase activity|down-regulation of endo-1,4-beta-xylanase activity|downregulation of endo-1,4-beta-xylanase activity|down regulation of endo-1,4-beta-xylanase activity biological_process owl:Class GO:0099576 biolink:NamedThing regulation of protein catabolic process at postsynapse, modulating synaptic transmission Any process that modulates synaptic transmission by regulating a catabolic process occurring at a postsynapse. tmpzr1t_l9r_go_relaxed.owl Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. biological_process owl:Class GO:0090594 biolink:NamedThing inflammatory response to wounding The immediate defensive reaction by vertebrate tissue to injury caused by chemical or physical agents. tmpzr1t_l9r_go_relaxed.owl tb 2014-08-12T12:13:53Z biological_process owl:Class GO:0048223 biolink:NamedThing hemicellulose network Network composed of hemicelluloses; members of a class of plant cell wall polysaccharide that cannot be extracted from the wall by hot water or chelating agents, but can be extracted by aqueous alkali. Includes xylan, glucuronoxylan, arabinoxylan, arabinogalactan II, glucomannan, xyloglucan and galactomannan. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0005055 biolink:NamedThing laminin receptor activity Combining with a laminin, a glycoprotein that constitutes the majority of proteins in the basement membrane, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'cell adhesion molecule binding ; GO:0050839' and 'receptor binding ; GO:0005102' and the biological process term 'cell adhesion ; GO:0007155'. molecular_function owl:Class GO:0072031 biolink:NamedThing proximal convoluted tubule segment 1 development The process whose specific outcome is the progression of the S1 portion of the proximal convoluted tubule over time, from its formation to the mature structure. The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes. tmpzr1t_l9r_go_relaxed.owl S1 development mah 2010-01-25T02:55:57Z biological_process owl:Class GO:0044190 biolink:NamedThing host cell mitochondrial envelope The double lipid bilayer enclosing the host cell mitochondrion and separating its contents from the host cell cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-15T04:12:55Z cellular_component owl:Class GO:0060460 biolink:NamedThing left lung morphogenesis The process in which anatomical structures of the left lung are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098506 biolink:NamedThing polynucleotide 3' dephosphorylation The process of removing one or more phosphate groups from the 3' end of a polynucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061057 biolink:NamedThing peptidoglycan recognition protein signaling pathway A series of molecular signals initiated by binding of peptidoglycan to a receptor and ending with regulation of a downstream cellular process. The main outcome of the Imd signaling is the production of antimicrobial peptides. tmpzr1t_l9r_go_relaxed.owl PGRP signaling pathway|Imd signaling pathway|Imd signalling pathway|immune deficiency signaling pathway|immune deficiency pathway dph 2010-03-02T12:20:10Z biological_process owl:Class GO:0051316 biolink:NamedThing attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation The cell cycle process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex contributing to meiotic chromosome segregation. tmpzr1t_l9r_go_relaxed.owl attachment of spindle microtubules to kinetochore during meiosis|attachment of spindle microtubules to meiotic chromosome|attachment of spindle microtubules to kinetochore during meiotic chromosome segregation GO:0051317 biological_process owl:Class GO:0031517 biolink:NamedThing red light photoreceptor activity The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 660nm. The response may involve a change in conformation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0086095 biolink:NamedThing positive regulation of IKACh channel activity by G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate A G protein-coupled acetylcholine receptor signaling pathway that contributes to a decrease in frequency or rate of heart contraction through activation of the IKACh potassium channel. Binding of acetylcholine to a G protein-coupled acetylcholine receptor (muscarinic receptor) on the surface of the signal-receiving cell results in liberation of the G-beta/gamma complex from the alpha subunit. The G-beta/gamma complex binds directly to the inward-rectifying potassium channel IKACh. Once the ion channel is activated, potassium ions (K+) flow out of the cell and cause it to hyperpolarize. In its hyperpolarized state, action potentials cannot be fired as quickly as possible, which slows the heart rate. tmpzr1t_l9r_go_relaxed.owl muscarinic receptor signaling pathway involved in activation of IKACH|cardiac muscarinic receptor signaling via Gbeta/gamma|muscarinic receptor signaling pathway involved in ion channel activation|Gbeta/gamma-coupled muscarinic receptor signaling pathway involved in negative regulation of heart rate|positive regulation of IKACh channel activity by G-protein coupled acetylcholine receptor signaling bf biological_process owl:Class GO:1904406 biolink:NamedThing negative regulation of nitric oxide metabolic process Any process that stops, prevents or reduces the frequency, rate or extent of nitric oxide metabolic process. tmpzr1t_l9r_go_relaxed.owl down regulation of nitric oxide metabolism|down-regulation of nitric oxide metabolic process|downregulation of nitric oxide metabolism|downregulation of nitric oxide metabolic process|down regulation of nitric oxide metabolic process|negative regulation of nitric oxide metabolism|inhibition of nitric oxide metabolism|inhibition of nitric oxide metabolic process|down-regulation of nitric oxide metabolism sl 2015-06-24T20:56:41Z biological_process owl:Class GO:0090636 biolink:NamedThing outer dense plaque of desmosome The desmosomal part containing plakoglobins, plakophilins, the N-termini of desmoplakins, as well as the cytoplasmic tails of the desmosomal cadherins, which together attach the plaque to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-20T16:10:51Z cellular_component owl:Class GO:0034274 biolink:NamedThing Atg12-Atg5-Atg16 complex A protein complex required for the expansion of the autophagosomal membrane. In budding yeast, this complex consists of Atg12p, Atg5p and Atg16p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035209 biolink:NamedThing pupal development The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904652 biolink:NamedThing protein localization to cell division site involved in cell separation after cytokinesis Any protein localization to cell division site that is involved in cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl vw 2015-09-01T21:04:45Z biological_process owl:Class GO:0071697 biolink:NamedThing ectodermal placode morphogenesis The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-02T11:49:51Z biological_process owl:Class GO:0046540 biolink:NamedThing U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex that is formed by the association of the U4/U6 and U5 snRNPs. tmpzr1t_l9r_go_relaxed.owl U4/U6.U5 snRNP complex cellular_component owl:Class GO:1905438 biolink:NamedThing non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation Any non-canonical Wnt signaling pathway that is involved in midbrain dopaminergic neuron differentiation. tmpzr1t_l9r_go_relaxed.owl beta-catenin-independent Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|beta-catenin-independent Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate|beta-catenin-independent Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate|non-canonical Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate|non-canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate|non-canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt-activated signaling pathway involved in mDA neuron differentiation|non-canonical Wnt signaling pathway involved in midbrain DA neurogenesis|non-canonical Wnt-activated signaling pathway involved in midbrain DA neurogenesis|non-canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt receptor signaling pathway involved in mDA neuron differentiation|non-canonical Wnt receptor signalling pathway involved in mDA neuron differentiation|non-canonical Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt receptor signalling pathway involved in midbrain DA neurogenesis|non-canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation|non-canonical Wnt receptor signaling pathway involved in midbrain DA neurogenesis|beta-catenin-independent Wnt receptor signaling pathway involved in midbrain DA neurogenesis|beta-catenin-independent Wnt receptor signaling pathway involved in mDA neuron differentiation|non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron production|non-canonical Wnt signaling pathway involved in mDA neuron differentiation|non-canonical Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate bc 2016-09-14T15:52:22Z biological_process owl:Class GO:0007305 biolink:NamedThing vitelline membrane formation involved in chorion-containing eggshell formation Construction of the vitelline membrane portion of a chorion-containing eggshell. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl vitelline membrane formation in chorion-containing eggshell biological_process owl:Class GO:0007426 biolink:NamedThing tracheal outgrowth, open tracheal system The projection of branches of an open tracheal system towards their target tissues. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904466 biolink:NamedThing positive regulation of matrix metallopeptidase secretion Any process that activates or increases the frequency, rate or extent of matrix metallopeptidase secretion. tmpzr1t_l9r_go_relaxed.owl activation of MMP secretion|up-regulation of MMP secretion|upregulation of matrix metalloproteinase secretion|activation of matrix metalloproteinase secretion|up-regulation of matrix metalloproteinase secretion|up-regulation of matrix metallopeptidase secretion|upregulation of matrix metallopeptidase secretion|up regulation of matrix metallopeptidase secretion|positive regulation of matrix metalloproteinase secretion|up regulation of MMP secretion|upregulation of MMP secretion|activation of matrix metallopeptidase secretion|up regulation of matrix metalloproteinase secretion|positive regulation of MMP secretion sl 2015-07-09T19:46:30Z biological_process owl:Class GO:0060961 biolink:NamedThing phospholipase D inhibitor activity Binds to and stops, prevents or reduces the activity of phospholipase D. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-05T02:47:26Z molecular_function owl:Class GO:0060941 biolink:NamedThing epicardium-derived cardiac fibroblast cell fate commitment The commitment of an epicardial cell to a cardiac fibroblast cell fate and its capacity to differentiate into a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules. tmpzr1t_l9r_go_relaxed.owl dph 2009-09-29T01:44:36Z biological_process owl:Class GO:0030229 biolink:NamedThing very-low-density lipoprotein particle receptor activity Combining with a very-low-density lipoprotein particle and delivering the very-low-density lipoprotein into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl apolipoprotein E receptor activity|VLDL receptor|very-low-density lipoprotein receptor activity Wikipedia:VLDL_receptor molecular_function owl:Class GO:0120203 biolink:NamedThing rod photoreceptor disc lumen The volume enclosed by the membrane of a rod photoreceptor cell disc membrane. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-07T23:49:50Z cellular_component owl:Class GO:0120200 biolink:NamedThing rod photoreceptor outer segment The outer segment of a vertebrate rod photoreceptor that contains sealed membrane discs that are not connected to the ciliary membrane and containing rhodopsin photoreceptor proteins. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-07T22:47:20Z cellular_component owl:Class GO:0039006 biolink:NamedThing pronephric nephron tubule formation The developmental process pertaining to the initial formation of a pronephric nephron tubule from unspecified parts. A pronephric nephron tubule is an epithelial tube that is part of a nephron in the pronephros. tmpzr1t_l9r_go_relaxed.owl pronephric tubule formation|pronephros tubule formation bf 2010-07-02T09:37:27Z biological_process owl:Class GO:0004984 biolink:NamedThing olfactory receptor activity Combining with an odorant and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity in response to detection of smell. tmpzr1t_l9r_go_relaxed.owl odorant receptor activity molecular_function owl:Class GO:0098652 biolink:NamedThing collagen type VII anchoring fibril An antiparallel dimer of two collagen VII trimers, one end of which is embedded in the lamina densa while the other end attaches to banded collagen fibrils in the dermis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904866 biolink:NamedThing ventral tegmental area development The process whose specific outcome is the progression of a ventral tegmental area (VTA) over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl area tegmentalis ventralis development|ventral tegmental area (Tsai) development|a10a development|ventral tegmental nucleus of tsai development|ventral tegmentum development|ventral brain stem development|ventral tegmental area of tsai development|ventral tegmental nucleus (tsai) development|ventromedial mesencephalic tegmentum development|tegmentum ventrale development|VTA development|area tegmentalis ventralis (Tsai) development|ventral tegmental nucleus (Rioch) development bf 2015-12-17T14:44:18Z biological_process owl:Class GO:0140247 biolink:NamedThing protein catabolic process at presynapse The chemical reactions and pathways resulting in the breakdown of a protein at a presynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/204 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:23:49Z biological_process owl:Class GO:0060054 biolink:NamedThing positive regulation of epithelial cell proliferation involved in wound healing Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007477 biolink:NamedThing notum development The process whose specific outcome is the progression of the dorsal part of the body over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035996 biolink:NamedThing rhabdomere microvillus Thin cylindrical membrane-covered projection on the surface of a rhabdomere. tmpzr1t_l9r_go_relaxed.owl bf 2011-09-01T02:18:30Z cellular_component owl:Class GO:0090009 biolink:NamedThing primitive streak formation The developmental process pertaining to the initial formation of the primitive streak from unspecified parts. The primitive streak is a ridge of cells running along the midline of the embryo where the mesoderm ingresses. It defines the anterior-posterior axis. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T10:31:31Z biological_process owl:Class GO:0075201 biolink:NamedThing penetration hypha formation The assembly by the symbiont of a threadlike, tubular structure, which may contain multiple nuclei and may or may not be divided internally by septa or cross-walls, for the purpose of penetration into its host organism. In the case of an appressorium existing, this term is defined in further details as the process in which the symbiont penetration peg expands to form a hypha which traverses the epidermal cell and emerges into the intercellular space of the mesophyll tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation of symbiont penetration hypha for entry into host|symbiont penetration hypha formation for entry into host https://github.com/geneontology/go-ontology/issues/18557 Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0030478 biolink:NamedThing actin cap Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl GO:0000143 cellular_component owl:Class GO:0005896 biolink:NamedThing interleukin-6 receptor complex A hexameric protein complex consisting of two molecules each of interleukin-6, interleukin-6 receptor alpha chain, and gp-130. tmpzr1t_l9r_go_relaxed.owl IL-6 receptor complex cellular_component owl:Class GO:0034441 biolink:NamedThing plasma lipoprotein particle oxidation The modification of a lipid or protein within a plasma lipoprotein particle by oxidation of the lipid or one or more amino acids. tmpzr1t_l9r_go_relaxed.owl plasma lipoprotein oxidation biological_process owl:Class GO:0010659 biolink:NamedThing cardiac muscle cell apoptotic process A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. tmpzr1t_l9r_go_relaxed.owl cardiac muscle cell apoptosis biological_process owl:Class GO:1900029 biolink:NamedThing positive regulation of ruffle assembly Any process that activates or increases the frequency, rate or extent of ruffle assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of ruffle assembly|positive regulation of membrane ruffle formation|positive regulation of membrane ruffling|up regulation of membrane ruffle formation|up regulation of membrane ruffling yaf 2012-01-12T05:00:56Z biological_process owl:Class GO:0051755 biolink:NamedThing meiotic sister chromatid arm separation The cell cycle process in which sister chromatid arms are physically detached from each other during meiosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039705 biolink:NamedThing viral translational readthrough The continuation of translation of a viral mRNA beyond a stop codon by the use of a special tRNA that recognizes the UAG and UGA codons as modified amino acids, rather than as termination codons. tmpzr1t_l9r_go_relaxed.owl viral RNA suppression of termination|viral stop codon readthrough VZ:859 This term is intended to annotate gene products involved in the process of viral translational readthrough, not viral proteins produced by this translation process. bf 2013-11-25T13:20:37Z biological_process owl:Class GO:0052607 biolink:NamedThing 7-hydroxy-chlorophyllide a oxygenase activity Catalysis of the reaction: 7-hydroxychlorophyllide a + NADPH + O2 + H+ = chlorophyllide b + NADP+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl CAO activity|7-hydroxychlorophyllide-a oxygenase activity|7-hydroxychlorophyllide a:oxygen 7-oxidoreductase activity|chlorophyll b synthetase activity|chlorophyll-b synthase activity RHEA:22136|MetaCyc:RXN-7677|KEGG_REACTION:R08204 molecular_function owl:Class GO:0140053 biolink:NamedThing mitochondrial gene expression The process in which a mitochondrial gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl pg 2017-06-26T10:57:45Z biological_process owl:Class GO:0016338 biolink:NamedThing calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl calcium-independent cell adhesion molecule activity biological_process owl:Class GO:0098639 biolink:NamedThing collagen binding involved in cell-matrix adhesion Any collagen binding that occurs as part of cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0120102 biolink:NamedThing bacterial-type flagellum secretion apparatus A part of the bacterial-type flagellum that is located at the cytoplasmic side of the MS ring and composed of six membrane proteins (FlhA, FlhB, FliP, FliQ, FliR, and FliO, or orthologs thereof) and three soluble proteins (FliI, FliH, and FliJ, or orthologs thereof) in the cytoplasm. It is responsible for secretion of flagellar type III protein substrates, including the proteins of the flagellar rod, hook, and filament. tmpzr1t_l9r_go_relaxed.owl bacterial-type flagellum export apparatus krc 2017-10-03T16:13:24Z cellular_component owl:Class GO:0043593 biolink:NamedThing endospore coat The layer in a bacterial endospore that lies under the exosporium, and is impermeable to many toxic molecules. The coat may also contain enzymes that are involved in endospore germination. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001795 biolink:NamedThing type IIb hypersensitivity An inflammatory response resulting in cell death or dysfunction mediated by the direct binding of antibody to cellular receptors. tmpzr1t_l9r_go_relaxed.owl type V hypersensitivity Note that some type IIa hypersensitivity response (GO:0001794) are referred to simply as type II hypersensitivity in the earlier literature, but are mechanistically distinct from type IIb hypersensitivity. biological_process owl:Class GO:1990095 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to reactive oxygen species Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. tmpzr1t_l9r_go_relaxed.owl pr 2013-05-07T12:10:32Z biological_process owl:Class GO:0021850 biolink:NamedThing subpallium glioblast cell division The division of glioblasts in the subpallium. These cells will give rise to oligodendrocytes. tmpzr1t_l9r_go_relaxed.owl glioblast division in ventral telencephalon|glioblast cell division in subpallium biological_process owl:Class GO:0070488 biolink:NamedThing neutrophil aggregation The adhesion of one neutrophil to one or more other neutrophils via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl neutrocyte aggregation|neutrophilic leukocyte aggregation|neutrophilic leucocyte aggregation|neutrophil leucocyte aggregation|neutrophil leukocyte aggregation biological_process owl:Class GO:1902736 biolink:NamedThing positive regulation of receptor-mediated virion attachment to host cell Any process that activates or increases the frequency, rate or extent of receptor-mediated virion attachment to host cell. tmpzr1t_l9r_go_relaxed.owl activation of virion attachment, binding of host cell surface receptor|up-regulation of receptor-mediated virion attachment to host cell|activation of receptor-mediated virion attachment to host cell|up regulation of virion attachment, binding of host cell surface receptor|up regulation of receptor-mediated virion attachment to host cell|positive regulation of virion attachment, binding of host cell surface receptor|upregulation of virion attachment, binding of host cell surface receptor|upregulation of receptor-mediated virion attachment to host cell|up-regulation of virion attachment, binding of host cell surface receptor als 2014-02-25T12:26:16Z biological_process owl:Class GO:0044581 biolink:NamedThing butyryl-CoA catabolic process to butyrate The chemical reactions a resulting in the resulting in the breakdown of butyryl-CoA to form butyrate. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA catabolism to butyrate jl 2012-04-19T04:29:40Z biological_process owl:Class GO:1990101 biolink:NamedThing DnaA-oriC complex A protein-DNA complex containing the initiator protein DnaA bound to high-affinity recognition sites in the unique origin of replication, oriC. DnaA-oriC binding is the first step in assembly of a bacterial pre-replicative complex (pre-RC) and is responsible for the timely initiation of replication once per cell cycle. tmpzr1t_l9r_go_relaxed.owl DnaA-DNA complex bhm 2013-05-14T12:07:04Z cellular_component owl:Class GO:0060437 biolink:NamedThing lung growth The increase in size or mass of a lung. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990728 biolink:NamedThing mitotic spindle assembly checkpoint MAD1-MAD2 complex A protein complex involved in the assembly of the mitotic checkpoint complex that in turn inhibits the anaphase promoting complex/cyclosome (APC/C). The MAD1 dimer recruits the open form of MAD2 (O-MAD2) turning it into the closed form (C-MAD2) upon binding. C-MAD2 inhibits CDC20, a member of the APC/C, upon release from the MAD1-MAD2 complex. tmpzr1t_l9r_go_relaxed.owl MAD1-MAD2 complex An example of this is MAD1 in human (Q9Y6D9) in PMID:12006501 (inferred from physical interaction). bhm 2015-04-15T10:14:17Z cellular_component owl:Class GO:0015771 biolink:NamedThing trehalose transport The directed movement of trehalose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Trehalose is a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021919 biolink:NamedThing BMP signaling pathway involved in spinal cord dorsal/ventral patterning A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the spatial identity of regions along the dorsal-ventral axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl BMP signalling pathway involved in spinal cord dorsal-ventral patterning|bone morphogenetic protein signalling pathway involved in spinal cord dorsal-ventral patterning|BMP signaling pathway involved in spinal cord dorsal-ventral patterning|bone morphogenetic protein signaling pathway in spinal cord dorsal-ventral patterning|BMP signaling pathway in spinal cord dorsoventral patterning biological_process owl:Class GO:0048381 biolink:NamedThing lateral mesoderm structural organization The process that contributes to the act of creating the structural organization of the lateral mesoderm. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl lateral mesoderm structural organisation|lateral plate mesoderm structural organization biological_process owl:Class GO:0061195 biolink:NamedThing taste bud formation The developmental process pertaining to the initial formation of the taste bud from unspecified parts. The taste bud is a specialized area of the tongue that contains taste receptors. tmpzr1t_l9r_go_relaxed.owl dph 2010-07-27T12:22:26Z biological_process owl:Class GO:0060709 biolink:NamedThing glycogen cell differentiation involved in embryonic placenta development The process in which a relatively unspecialized cell acquires specialized features of a glycogen cell of the placenta. A glycogen cell is a vacuolated glycogen-rich cell that appears in compact cell islets of the spongiotrophoblast layer. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-09T10:41:08Z biological_process owl:Class GO:2000032 biolink:NamedThing regulation of secondary shoot formation Any process that modulates the frequency, rate or extent of secondary shoot formation. tmpzr1t_l9r_go_relaxed.owl regulation of axillary shoot system formation|regulation of axillary shoot formation|regulation of shoot branching|regulation of auxiliary shoot formation tb 2010-08-05T11:32:50Z biological_process owl:Class GO:0120150 biolink:NamedThing regulation of mitotic actomyosin contractile ring disassembly Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring disassembly. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic CAR disassembly|regulation of mitotic actomyosin ring disassembly|regulation of mitotic cytokinetic ring disassembly|regulation of mitotic contractile actomyosin ring disassembly|regulation of mitotic constriction ring disassembly krc 2018-04-24T15:06:28Z biological_process owl:Class GO:1990920 biolink:NamedThing proteasome localization to nuclear periphery Any process in which the proteasome is transported to, or maintained at the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl vw 2015-12-14T17:14:00Z biological_process owl:Class GO:0048142 biolink:NamedThing germarium-derived cystoblast division The four rounds of incomplete mitosis undergone by a cystoblast to form a 16-cell cyst of interconnected cells within a germarium. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl germarium-derived cystoblast cell division biological_process owl:Class GO:0030727 biolink:NamedThing germarium-derived female germ-line cyst formation Formation, in a germarium, of a group of interconnected cells derived from a single female gonial founder cell (a cystoblast). The germarium is the most anterior portion of an insect ovariole. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl germarium-derived female germline cyst formation biological_process owl:Class GO:0035289 biolink:NamedThing posterior head segmentation Partitioning the posterior region of the insect head anlage into gnathal (mandibular, maxillary and labial) segments. Unlike the anterior head (procephalic) segments, formation of the posterior head (gnathal) segments occurs by a similar mechanism to trunk segmentation, where a cascade of gap genes, pair-rule genes and segment-polarity genes subdivide the embryo into progressively smaller domains. tmpzr1t_l9r_go_relaxed.owl gnathal segmentation See also the fly_anatomy.ontology term 'gnathal segment ; FBbt:00000011' and its children. biological_process owl:Class GO:0048596 biolink:NamedThing embryonic camera-type eye morphogenesis The process in which the anatomical structures of the eye are generated and organized during embryonic development. tmpzr1t_l9r_go_relaxed.owl embryonic eye morphogenesis biological_process owl:Class GO:1905528 biolink:NamedThing positive regulation of Golgi lumen acidification Any process that activates or increases the frequency, rate or extent of Golgi lumen acidification. tmpzr1t_l9r_go_relaxed.owl up-regulation of Golgi lumen acidification|activation of Golgi lumen acidification|up regulation of Golgi lumen acidification|upregulation of Golgi lumen acidification dph 2016-10-05T13:16:41Z biological_process owl:Class GO:0038186 biolink:NamedThing lithocholic acid receptor activity Combining with lithocholic acid and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl LCA receptor activity bf 2013-05-16T11:13:38Z molecular_function owl:Class GO:0071644 biolink:NamedThing negative regulation of chemokine (C-C motif) ligand 4 production Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 4. tmpzr1t_l9r_go_relaxed.owl negative regulation of macrophage inflammatory protein production|negative regulation of MIP-1b production|negative regulation of CCL4 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0010007 biolink:NamedThing magnesium chelatase complex A heterotrimeric enzyme complex composed of three subunits, all of which are required for enzyme activity, which catalyzes the chelation of Mg by proto IX in an ATP-dependent manner. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990394 biolink:NamedThing cellular response to cell wall damage Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cell wall damage. The process begins with detection of the damage and ends with a change in state or activity of the cell. tmpzr1t_l9r_go_relaxed.owl al 2014-06-05T16:45:33Z biological_process owl:Class GO:0071433 biolink:NamedThing cell wall repair A process of cell wall organization that results in the restoration of the cell wall following damage. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T11:00:50Z biological_process owl:Class GO:0150037 biolink:NamedThing regulation of calcium-dependent activation of synaptic vesicle fusion Any process that modulates the frequency, rate or extent of calcium-dependent activation of synaptic vesicle fusion. tmpzr1t_l9r_go_relaxed.owl bc 2018-04-18T12:47:38Z biological_process owl:Class GO:0099502 biolink:NamedThing calcium-dependent activation of synaptic vesicle fusion The regulatory process by which increased cytosolic calcium levels lead to the the fusion of synaptic vesicles with the presynaptic active zone membrane by bringing primed synaptic vesicle membrane into contact with membrane presynaptic active zone membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140253 biolink:NamedThing cell-cell fusion A cellular process in which two or more cells combine together, their plasma membrane fusing, producing a single cell. In some cases, nuclei fuse, producing a polyploid cell, while in other cases, nuclei remain separate, producing a syncytium. tmpzr1t_l9r_go_relaxed.owl cell cell fusion|cell fusion https://github.com/geneontology/go-ontology/issues/15939 pg 2018-08-13T18:38:18Z biological_process owl:Class GO:0072287 biolink:NamedThing metanephric distal tubule morphogenesis The process in which the anatomical structures of a metanephric distal tubule are generated and organized. The metanephric distal tubule is a metanephric nephron tubule that begins at the macula densa and extends to the metanephric connecting tubule. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-09T03:41:47Z biological_process owl:Class GO:0019778 biolink:NamedThing Atg12 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier APG12, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl APG12 activating enzyme activity molecular_function owl:Class GO:0005948 biolink:NamedThing acetolactate synthase complex A dimeric (a large and a small chain) or tetrameric (two large and two small chains) enzyme complex. Catalyzes the formation of acetolactate from pyruvate. tmpzr1t_l9r_go_relaxed.owl acetohydroxyacid synthase complex See also the molecular function term 'acetolactate synthase activity ; GO:0003984'. cellular_component owl:Class GO:0007547 biolink:NamedThing germ-line processes downstream of sex determination signal The events determining the germ-line sexual phenotype after the initial transmission of that phenotype to germ-line-specific information pathways. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003038 biolink:NamedThing detection of reduced oxygen by aortic body chemoreceptor signaling The process in which information about the levels of oxygen are received and are converted to a molecular signal by chemoreceptors in an aortic body. tmpzr1t_l9r_go_relaxed.owl detection of reduced oxygen by aortic body chemoreceptor signalling biological_process owl:Class GO:0035905 biolink:NamedThing ascending aorta development The progression of the ascending aorta over time, from its initial formation to the mature structure. The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta. In a two-pass circulatory system blood passes twice through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:02:01Z biological_process owl:Class GO:2000854 biolink:NamedThing positive regulation of corticosterone secretion Any process that activates or increases the frequency, rate or extent of corticosterone secretion. tmpzr1t_l9r_go_relaxed.owl bf 2011-07-26T08:45:45Z biological_process owl:Class GO:0001850 biolink:NamedThing complement component C3a binding Binding to a C3a product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031898 biolink:NamedThing chromoplast envelope The double lipid bilayer enclosing the chromoplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0060081 biolink:NamedThing membrane hyperpolarization The process in which membrane potential increases with respect to its steady-state potential, usually from negative potential to a more negative potential. For example, during the repolarization phase of an action potential the membrane potential often becomes more negative or hyperpolarized before returning to the steady-state resting potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070755 biolink:NamedThing negative regulation of interleukin-35 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-35 production. tmpzr1t_l9r_go_relaxed.owl downregulation of interleukin-35 production|negative regulation of IL-35 production|down-regulation of interleukin-35 production|down regulation of interleukin-35 production|inhibition of interleukin-35 production|negative regulation of interleukin-35 biosynthetic process mah 2009-06-23T01:34:54Z GO:0070751 biological_process owl:Class GO:0034632 biolink:NamedThing retinol transmembrane transporter activity Enables the transfer of retinol from one side of a membrane to the other. Retinol is vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl retinol transporter activity|vitamin A1 transporter activity Reactome:R-HSA-2466749|Reactome:R-HSA-1467466|Reactome:R-HSA-2466802 molecular_function owl:Class GO:0060698 biolink:NamedThing endoribonuclease inhibitor activity Binds to and stops, prevents or reduces the activity of endoribonuclease. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-08T02:37:19Z molecular_function owl:Class GO:0015676 biolink:NamedThing vanadium ion transport The directed movement of vanadium (V) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1901538 biolink:NamedThing changes to DNA methylation involved in embryo development The addition or removal of methyl groups to DNA that contributes to the epigenetic regulation of embryonic gene expression. tmpzr1t_l9r_go_relaxed.owl changes in DNA methylation involved in embryogenesis|changes in DNA methylation involved in embryo development|DNA methylation or demethylation involved in embryogenesis|changes in DNA methylation involved in embryonal development|DNA methylation or demethylation involved in embryonal development jl 2012-10-25T14:53:43Z biological_process owl:Class GO:0048938 biolink:NamedThing lateral line nerve glial cell morphogenesis involved in differentiation The process in which the structure of a glial cell in a lateral line nerve is generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a glial cell in a lateral line nerve. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006617 biolink:NamedThing SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition The process in which SRP binds to the signal peptide in a nascent protein, causing protein elongation to pause, during cotranslational membrane targeting. tmpzr1t_l9r_go_relaxed.owl SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition|signal sequence recognition during SRP-dependent cotranslational protein targeting to membrane|SRP-dependent cotranslational membrane targeting, signal sequence recognition biological_process owl:Class GO:0030875 biolink:NamedThing rDNA protrusion Any of the tandem arrays of rDNA localized at the periphery of the nucleus and protruding into the nucleolus, and associated proteins. May be visible as a single or double spot by DAPI staining. tmpzr1t_l9r_go_relaxed.owl ribosomal DNA protrusion Note that this component is characterized in Schizosaccharomyces, particularly with respect to the DAPI staining pattern. cellular_component owl:Class GO:0042697 biolink:NamedThing menopause Cessation of menstruation, occurring in (e.g.) the human female usually around the age of 50. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Menopause Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0033269 biolink:NamedThing internode region of axon An axon part that is located between the nodes of Ranvier and surrounded by compact myelin sheath. tmpzr1t_l9r_go_relaxed.owl internode NIF_Subcellular:sao206157942 cellular_component owl:Class GO:0007378 biolink:NamedThing amnioserosa formation Formation of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis. This occurs by the transformation of a narrow strip of cells at the dorsal midline of the blastoderm from columnar to squamous cells, accompanied by a lateral shift. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036278 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-11T11:02:55Z biological_process owl:Class GO:0060058 biolink:NamedThing positive regulation of apoptotic process involved in mammary gland involution Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process of mammary epithelial cells during mammary gland involution. tmpzr1t_l9r_go_relaxed.owl positive regulation of apoptosis involved in mammary gland involution biological_process owl:Class GO:0086039 biolink:NamedThing P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential A calcium-transporting P-type ATPase activity involved in regulation of the plasma membrane potential. tmpzr1t_l9r_go_relaxed.owl calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential tb 2011-11-11T03:33:44Z molecular_function owl:Class GO:0048905 biolink:NamedThing anterior lateral line neuromast mantle cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an anterior lateral line neuromast mantle cell. Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001986 biolink:NamedThing negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure Any process that decreases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the baroreceptor response to increased blood pressure. tmpzr1t_l9r_go_relaxed.owl decreased force of heart contraction during baroreceptor response to increased systemic arterial blood pressure|decreased strength of cardiac contraction during baroreceptor response to increased blood pressure biological_process owl:Class GO:0072546 biolink:NamedThing EMC complex A transmembrane protein complex located in the endoplasmic reticulum (ER) involved in the insertion of newly synthesized proteins in the membrane of the ER. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum membrane protein complex|ER membrane protein complex https://github.com/geneontology/go-ontology/issues/20234 Note that this complex used to be thought to be involved in ER-mitochondrial membrane tethering, which is required to facilitate lipid transfer from the ER to the mitochondrial membrane, but newer findings show that this was incorrect. mah 2011-01-19T06:16:53Z cellular_component owl:Class GO:0016201 biolink:NamedThing synaptic target inhibition The process in which a neuronal cell in a multicellular organism recognizes chemorepellent signals that inhibit its growth toward the source. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048101 biolink:NamedThing calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity Catalysis of the reaction: guanosine 3',5'-cyclic phosphate + H2O = guanosine 5'-phosphate. The reaction is calmodulin and calcium-sensitive. tmpzr1t_l9r_go_relaxed.owl calcium/calmodulin-regulated cGMP-specific phosphodiesterase activity|calcium- and calmodulin-regulated cyclic-GMP phosphodiesterase activity|calcium- and calmodulin-regulated cGMP phosphodiesterase activity|calcium- and calmodulin-regulated cGMP-specific phosphodiesterase activity molecular_function owl:Class GO:0008448 biolink:NamedThing N-acetylglucosamine-6-phosphate deacetylase activity Catalysis of the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetate. tmpzr1t_l9r_go_relaxed.owl 2-acetamido-2-deoxy-D-glucose-6-phosphate amidohydrolase activity|N-acetyl-D-glucosamine-6-phosphate amidohydrolase activity|acetylaminodeoxyglucosephosphate acetylhydrolase activity|acetylglucosamine phosphate deacetylase activity MetaCyc:NAG6PDEACET-RXN|Reactome:R-HSA-6803789|RHEA:22936|EC:3.5.1.25 molecular_function owl:Class GO:0048479 biolink:NamedThing style development The process whose specific outcome is the progression of the style over time, from its formation to the mature structure. The style is an elongated part of a carpel, or group of fused carpels, and it lies between the ovary and the stigma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990352 biolink:NamedThing BRE1 E3 ubiquitin ligase complex A homodimeric protein complex composed of the E3 ubiquitin-protein ligase BRE1. Plays a role in regulating association of RNA polymerase II with active genes. tmpzr1t_l9r_go_relaxed.owl BRE1 E3 ubiquitin-protein ligase complex|BRE1 oligomer An example of this is BRE1 in Saccharomyces cerevisiae (UniProt symbol Q07457) in PMID:19531475 (inferred from direct assay). bhm 2014-03-27T13:49:05Z cellular_component owl:Class GO:0052373 biolink:NamedThing suppression of symbiont entry into host Any process in which an organism stops, prevents, or reduces the frequency, rate or extent to which it enters into a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by organism of entry into other organism during symbiotic interaction|inhibition by organism of entry into other organism during symbiotic interaction|negative regulation by organism of entry into other organism during symbiotic interaction|negative regulation by organism of entry into other organism involved in symbiotic interaction|down-regulation by organism of entry into other organism during symbiotic interaction|suppression of symbiont entry into host by host|downregulation by organism of entry into other organism during symbiotic interaction biological_process owl:Class GO:1902355 biolink:NamedThing endothelial tube lumen extension involved in blood vessel lumen ensheathment Any endothelial tube lumen extension that is involved in blood vessel lumen ensheathment. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-14T10:22:09Z biological_process owl:Class GO:0052623 biolink:NamedThing ADP dimethylallyltransferase activity Catalysis of the reaction: delta2-isopentenyl diphosphate + ADP = diphosphate + N6-(delta(2)-isopentenyl)adenosine 5'-diphosphate. tmpzr1t_l9r_go_relaxed.owl 2-isopentenyl-diphosphate:ADP 2-isopentenyltransferase activity|dimethylallyl-diphosphate:ADP dimethylallyltransferase activity|ADP isopentenyltransferase activity|2-isopentenyl-diphosphate:ADP delta2-isopentenyltransferase activity KEGG_REACTION:R08051|EC:2.5.1.-|MetaCyc:RXN-4305 ai 2010-08-26T10:45:44Z molecular_function owl:Class GO:0000007 biolink:NamedThing low-affinity zinc ion transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Zn2+ = Zn2+, probably powered by proton motive force. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018725 biolink:NamedThing trans-3,4-dihydrodiolphenanthrene sulfotransferase activity Catalysis of the reaction: trans-3,4-dihydrodiolphenanthrene + 2 X-SO3(-) = 2 HX + phenanthrene-3,4-dihydrodiolsulfate conjugate. tmpzr1t_l9r_go_relaxed.owl trans-3,4-dihydrodiolphenanthrene sulphotransferase activity UM-BBD_reactionID:r0558 molecular_function owl:Class GO:0036121 biolink:NamedThing double-stranded DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of double-stranded DNA; drives the unwinding of a DNA helix. tmpzr1t_l9r_go_relaxed.owl double-stranded DNA-dependent ATP-dependent DNA helicase activity|double-stranded DNA-dependent ATPase activity|dsDNA-dependent ATP-dependent DNA helicase activity|dsDNA-dependent ATPase activity bf 2012-02-20T02:53:51Z GO:0033676 molecular_function owl:Class GO:1902764 biolink:NamedThing positive regulation of embryonic skeletal joint development Any process that activates or increases the frequency, rate or extent of embryonic skeletal joint development. tmpzr1t_l9r_go_relaxed.owl activation of embryonic skeletal joint development|up-regulation of embryonic skeletal joint development|upregulation of embryonic skeletal joint development|up regulation of embryonic skeletal joint development mr 2014-03-07T17:46:13Z biological_process owl:Class GO:0019586 biolink:NamedThing galacturonate metabolic process The chemical reactions and pathways involving galacturonate, the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. tmpzr1t_l9r_go_relaxed.owl galacturonate metabolism biological_process owl:Class GO:0052922 biolink:NamedThing hexaprenyl diphosphate synthase (geranylgeranyl-diphosphate specific) activity Catalysis of the reaction: geranylgeranyl diphosphate + 2 isopentenyl diphosphate = 2 diphosphate + all-trans-hexaprenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl (all-E) hexaprenyl diphosphate synthase activity|(all-trans)-hexaprenyl-diphosphate synthase activity|hexaprenyl diphosphate synthase activity|hexaprenyl pyrophosphate synthetase activity RHEA:27555|KEGG_REACTION:R09246|EC:2.5.1.82|MetaCyc:RXN-11485 molecular_function owl:Class GO:0071837 biolink:NamedThing HMG box domain binding Binding to an HMG box domain, a protein domain that consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T12:05:45Z molecular_function owl:Class GO:0072520 biolink:NamedThing seminiferous tubule development The reproductive developmental process whose specific outcome is the progression of the seminiferous tubule over time, from its formation to the mature structure. Seminiferous tubules are ducts located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-04T12:50:36Z biological_process owl:Class GO:0018682 biolink:NamedThing atrazine N-dealkylase activity Catalysis of the reaction: atrazine + O2 + 2 H+ = deethylatrazine + acetaldehyde + H2O. tmpzr1t_l9r_go_relaxed.owl atrazine monooxygenase activity EC:1.14.15.-|MetaCyc:R461-RXN|UM-BBD_reactionID:r0127 molecular_function owl:Class GO:0070047 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-4 complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 4 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Stx4-Snap25-Vamp2 complex|SNARE complex (Stx4, Snap25, Vamp2) cellular_component owl:Class GO:0140671 biolink:NamedThing ADA complex A chromatin remodelling complex that regulates transcription via acetylation primarily of nucleosomal histones H3 and H2B. In budding yeast shares the histone acetylation (HAT) module of ADA2-GCN5-NGG1-SGF29 with the related SAGA complex. tmpzr1t_l9r_go_relaxed.owl ADA histone acetyltransferase complex|ADA HAT complex|scADA|Ada2/Gcn5/Ada3 transcription activator complex https://github.com/geneontology/go-ontology/issues/21335 pg 2021-06-25T11:02:49Z cellular_component owl:Class GO:0103050 biolink:NamedThing isobutyraldehyde reductase activity Catalysis of the reaction: isobutanol + NADP <=> isobutyraldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-7119 molecular_function owl:Class GO:0001120 biolink:NamedThing protein-DNA complex remodeling The acquisition, loss, or modification of macromolecules within a protein-DNA complex, resulting in the alteration of an existing complex. tmpzr1t_l9r_go_relaxed.owl krc 2010-12-03T04:17:15Z biological_process owl:Class GO:0018439 biolink:NamedThing peptidyl-L-leucine methyl ester biosynthetic process from peptidyl-leucine The modification of a C-terminal peptidyl-leucine to form peptidyl-L-leucine methyl ester. tmpzr1t_l9r_go_relaxed.owl peptidyl-leucine esterification RESID:AA0299 GO:0018440 biological_process owl:Class GO:0061654 biolink:NamedThing NEDD8 conjugating enzyme activity Isoenergetic transfer of NEDD8 from one protein to another via the reaction X-NEDD8 + Y -> Y-NEDD8 + X, where both the X-NEDD8 and Y-NEDD8 linkages are thioester bonds between the C-terminal amino acid of NEDD8 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:27:56Z molecular_function owl:Class GO:1990120 biolink:NamedThing messenger ribonucleoprotein complex assembly The aggregation, arrangement and bonding together of proteins and messenger RNA (mRNA) molecules to form a messenger ribonucleoprotein (mRNP) complex. tmpzr1t_l9r_go_relaxed.owl mRNP assembly|mRNA-protein complex assembly|mRNP complex assembly|messenger ribonucleoprotein assembly rb 2013-06-11T21:18:20Z biological_process owl:Class GO:0034983 biolink:NamedThing peptidyl-lysine deacetylation The removal of an acetyl group from an acetylated lysine residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl protein lysine acetylation biological_process owl:Class GO:0034523 biolink:NamedThing 3-formylsalicylate oxidase activity Catalysis of the reaction: 3-formylsalicylic acid + O2 + H2O = 2-hydroxyisophthalic acid + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0777 molecular_function owl:Class GO:0047612 biolink:NamedThing acid-CoA ligase (GDP-forming) activity Catalysis of the reaction: a carboxylate + CoA + GTP = acyl-CoA + GDP + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl acyl-CoA synthetase (GDP-forming) activity|acid:CoA ligase (GDP-forming)|acyl coenzyme A synthetase (guanosine diphosphate forming) EC:6.2.1.10|MetaCyc:ACID--COA-LIGASE-GDP-FORMING-RXN|KEGG_REACTION:R00394|RHEA:10968 molecular_function owl:Class GO:0009389 biolink:NamedThing dimethyl sulfoxide reductase activity Catalysis of the reaction: dimethyl sulfoxide + H+ = dimethyl sulfide + H2O. tmpzr1t_l9r_go_relaxed.owl dimethyl sulphoxide reductase activity UM-BBD_reactionID:r0207|EC:1.8.99.- molecular_function owl:Class GO:0061680 biolink:NamedThing Entner-Doudoroff pathway through gluconate to D-glyceraldehyde The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate and yields pyruvate and D-glyceraldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ENTNER-DOUDOROFF-PWY-II dph 2015-01-22T08:51:31Z biological_process owl:Class GO:1990249 biolink:NamedThing nucleotide-excision repair, DNA damage recognition complex A protein complex that is capable of identifying lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests that the repair complex recognizes distortions in the DNA helix. It subsequently recruits a nucleotide-excision repair, preincision complex. tmpzr1t_l9r_go_relaxed.owl bhm 2013-12-05T16:26:51Z cellular_component owl:Class GO:0060945 biolink:NamedThing cardiac neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuron of the heart. tmpzr1t_l9r_go_relaxed.owl heart neuron differentiation dph 2009-09-29T02:45:33Z biological_process owl:Class GO:1904272 biolink:NamedThing L-tryptophan import across plasma membrane The directed movement of L-tryptophan from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl kmv 2015-05-29T13:39:27Z biological_process owl:Class GO:0021826 biolink:NamedThing substrate-independent telencephalic tangential migration The process where neuronal precursors migrate tangentially in the telencephalon, primarily guided by interactions that do not require cell-cell contact. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017071 biolink:NamedThing intracellular cyclic nucleotide activated cation channel complex A protein complex that forms a transmembrane channel through which cations ions may pass in response to an intracellular cyclic nucleotide binding to the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0086044 biolink:NamedThing atrial cardiac muscle cell to AV node cell communication by electrical coupling The process that mediates signaling interactions between an atrial cardiomyocyte and an AV node cell by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl atrial cardiomyocyte to atrioventricular node cell communication by electrical coupling|atrial cardiomyocyte to AV node cell communication by electrical coupling dph 2011-11-15T02:51:29Z biological_process owl:Class GO:0036016 biolink:NamedThing cellular response to interleukin-3 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-3 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-3 bf 2011-10-12T10:09:10Z biological_process owl:Class GO:0097627 biolink:NamedThing high-affinity L-ornithine transmembrane transporter activity Enables the transfer of L-ornithine from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity L-ornithine transmembrane transporter activity pr 2014-08-20T14:26:33Z molecular_function owl:Class GO:0033150 biolink:NamedThing cytoskeletal calyx A large cytoskeletal structure located at the posterior end of the perinuclear theca of a mammalian sperm head. The nucleus is tightly associated with the calyx, which contains calicin and basic cylicin proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031840 biolink:NamedThing type 2 neuromedin U receptor binding Binding to a type 2 neuromedin U receptor. tmpzr1t_l9r_go_relaxed.owl type 2 neuromedin U receptor ligand molecular_function owl:Class GO:0061634 biolink:NamedThing alpha-D-xyloside xylohydrolase Catalysis of the hydrolysis of terminal, non-reducing alpha-D-xylose residues with release of alpha-D-xylose. tmpzr1t_l9r_go_relaxed.owl alpha-xylosidase EC:3.2.1.177 dph 2014-07-28T08:12:39Z molecular_function owl:Class GO:0140576 biolink:NamedThing ascorbate homeostasis Any process involved in the maintenance of an internal steady state of ascorbate at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular ascorbate homeostasis https://github.com/geneontology/go-ontology/issues/20602|https://github.com/geneontology/go-ontology/issues/20672 pg 2021-01-07T16:50:44Z biological_process owl:Class GO:0048045 biolink:NamedThing trans-pentaprenyltranstransferase activity Catalysis of the reaction: all-trans-pentaprenyl diphosphate + isopentenyl diphosphate = all-trans-hexaprenyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl hexaprenyl pyrophosphate synthetase activity|all-trans-hexaprenyl-diphosphate synthase activity|all-trans-pentaprenyl-diphosphate:isopentenyl-diphosphate pentaprenyltranstransferase activity|hexaprenyl diphosphate synthase activity KEGG_REACTION:R05613|RHEA:22632 molecular_function owl:Class GO:0018541 biolink:NamedThing p-benzoquinone reductase (NADPH) activity Catalysis of the reaction: 1,4-benzoquinone + H(+) + NADPH = hydroquinone + NADP(+). tmpzr1t_l9r_go_relaxed.owl NADPH:p-benzoquinone oxidoreductase activity KEGG_REACTION:R05244|UM-BBD_enzymeID:e0422|MetaCyc:1.6.5.6-RXN|EC:1.6.5.6|RHEA:23488 molecular_function owl:Class GO:0048224 biolink:NamedThing lignin network An extracellular matrix part that consists of lignin in the form of a three-dimensional polymeric network. Lignins are complex racemic aromatic heteropolymers derived from a variety of phenylpropane monomers coupled together by an assortment of carbon-carbon and ether linkages. Lignin is crucial for structural integrity of the cell wall and stiffness and strength of the stem. In addition, lignin waterproofs the cell wall, enabling transport of water and solutes through the vascular system, and plays a role in protecting plants against pathogens. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030487 biolink:NamedThing inositol-4,5-bisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 4,5-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0089702 biolink:NamedThing undecaprenyl-phosphate glucose phosphotransferase activity Catalysis of the reaction: UDP-glucose + ditrans,octacis-undecaprenyl phosphate = UMP + alpha-D-glucopyranosyl-diphospho-ditrans,octacis-undecaprenol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019358 biolink:NamedThing nicotinate nucleotide salvage The generation of nicotinate nucleotide without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl nicotinate nucleotide biosynthetic process, salvage pathway|nicotinate nucleotide biosynthesis, salvage pathway MetaCyc:PYRIDNUCSAL-PWY|MetaCyc:PWY-5381 biological_process owl:Class GO:0102555 biolink:NamedThing octanoyl transferase activity (acting on glycine-cleavage complex H protein) Catalysis of the reaction: [glycine cleavage system lipoyl-carrier protein]-L-lysine + octanoyl-ACP = H+ + a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14966|EC:2.3.1.181|RHEA:17665 molecular_function owl:Class GO:0048203 biolink:NamedThing vesicle targeting, trans-Golgi to endosome The process in which vesicles are directed to specific destination membranes during transport from the trans-Golgi to the endosome. tmpzr1t_l9r_go_relaxed.owl trans-Golgi to endosome targeting biological_process owl:Class GO:0001987 biolink:NamedThing vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure A process that is triggered by vasomotor excitation and results in a decrease in the diameter of an artery during the baroreceptor response to decreased blood pressure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0039540 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of host RIG-I activity Any process in which a virus stops, prevents, or reduces a host viral-induced cytoplasmic pattern recognition receptor signaling pathway by inhibiting the activity of RIG-1 (also known as DDX58). The cytoplasmic pattern recognition RIG-I recognizes viral RNA synthesized during active viral replication and signals to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host RIG-I signaling|inhibition by virus of host RIG-I|inhibition of host DDX58/RIG-I by virus|inhibition by virus of host DDX58 activity|suppression by virus of host RIG-I signalling pathway|suppression by virus of host DDX58 signaling pathway|suppression by virus of host RIG-I signaling pathway|suppression by virus of host RIG-I activity https://github.com/geneontology/go-ontology/issues/21984 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response initiated by host RIG-I, either by binding and inhibiting host RIG-I directly, or by interfering with other processes so that RIG-I is unable to carry out its normal function (e.g. by processing viral RNA so it cannot be recognized by RIG-I, or by promoting the degradation of RIG-I). bf 2012-01-18T02:24:20Z GO:0039538 biological_process owl:Class GO:0018362 biolink:NamedThing peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester The covalent linkage of heme to peroxidase via dihydroxyheme-L-aspartyl ester-L-glutamyl ester. tmpzr1t_l9r_go_relaxed.owl peroxidase-haem linkage via dihydroxyhaem-L-aspartyl ester-L-glutamyl ester RESID:AA0279 GO:0019924 biological_process owl:Class GO:0043152 biolink:NamedThing induction of bacterial agglutination Any process in which infecting bacteria are clumped together by a host organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019426 biolink:NamedThing bisulfite reduction The chemical reactions and pathways resulting in the reduction of sulfate to thiosulfate via bisulfite. tmpzr1t_l9r_go_relaxed.owl bisulphite reduction MetaCyc:P224-PWY biological_process owl:Class GO:0001605 biolink:NamedThing adrenomedullin receptor activity Combining with adrenomedullin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl G10D receptor molecular_function owl:Class GO:0061143 biolink:NamedThing alveolar primary septum development The progression of a primary alveolar septum over time, from its formation to the mature structure. A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T10:21:27Z biological_process owl:Class GO:0050274 biolink:NamedThing salicyl-alcohol beta-D-glucosyltransferase activity Catalysis of the reaction: salicyl alcohol + UDP-D-glucose = H(+) + salicin + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:salicyl alcohol phenyl-glucosyltransferase activity|salicyl-alcohol b-D-glucosyltransferase activity|UDP-glucose:salicyl-alcohol beta-D-glucosyltransferase activity|UDPglucose:salicyl-alcohol beta-D-glucosyltransferase activity|uridine diphosphoglucose-salicyl alcohol 2-glucosyltransferase activity|salicyl-alcohol glucosyltransferase activity EC:2.4.1.172|RHEA:11512|MetaCyc:SALICYL-ALCOHOL-GLUCOSYLTRANSFERASE-RXN|KEGG_REACTION:R03558 molecular_function owl:Class GO:0047685 biolink:NamedThing amine sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an amine = adenosine 3',5'-bisphosphate + a sulfamate. tmpzr1t_l9r_go_relaxed.owl arylamine sulfotransferase activity|3'-phosphoadenylyl-sulfate:amine N-sulfotransferase activity|amine sulphotransferase activity|amine N-sulfotransferase activity EC:2.8.2.3|MetaCyc:ARYLAMINE-SULFOTRANSFERASE-RXN|RHEA:24136 molecular_function owl:Class GO:0010399 biolink:NamedThing rhamnogalacturonan I backbone metabolic process The chemical reactions and pathways involving the alternating alpha-(1->2)-linked rhamnose and alpha-(1->2)-linked B-galacturonic acid residues of the rhamnogalacturonan I backbone. tmpzr1t_l9r_go_relaxed.owl rhamnogalacturonan I backbone metabolism biological_process owl:Class GO:0039710 biolink:NamedThing cytoplasmic icosahedral capsid assembly The assembly of an icosahedral viral capsid in the cytoplasm. Often occurs by assembling around the viral genome. tmpzr1t_l9r_go_relaxed.owl bf 2013-11-28T15:20:50Z biological_process owl:Class GO:0018136 biolink:NamedThing peptidyl-thiazoline dehydrogenase activity Catalysis of the reduction of a peptide-linked thiazoline to thiazole. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046179 biolink:NamedThing keto-D-gluconate biosynthetic process The chemical reactions and pathways resulting in the formation of keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl keto-D-gluconate anabolism|keto-D-gluconate synthesis|keto-D-gluconate biosynthesis|keto-D-gluconate formation biological_process owl:Class GO:0047598 biolink:NamedThing 7-dehydrocholesterol reductase activity Catalysis of the reaction: cholesterol + NADP+ = cholesta-5,7-dien-3-beta-ol + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 7-DHC reductase activity|sterol Delta(7)-reductase activity|sterol delta7-reductase activity|cholesterol:NADP+ delta7-oxidoreductase activity EC:1.3.1.21|Reactome:R-HSA-6807055|RHEA:23984|MetaCyc:RXN66-323|Reactome:R-HSA-196402 molecular_function owl:Class GO:0071291 biolink:NamedThing cellular response to selenium ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:15:52Z biological_process owl:Class GO:0052796 biolink:NamedThing exo-alpha-(2->8)-sialidase activity Catalysis of the hydrolysis of alpha-(2->8)-glycosidic linkages of terminal sialic residues in substrates. tmpzr1t_l9r_go_relaxed.owl exo-alpha-(2,8)-sialidase activity|exo-alpha-2,8-sialidase activity EC:3.2.1.18 molecular_function owl:Class GO:0061897 biolink:NamedThing all-trans retinal 3,4-desaturase activity Catalysis of the reaction: all-trans-retinal + 2 H(+) + O2 + 2 reduced [adrenodoxin] = all-trans-3,4-didehydro retinal + 2 H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl dph 2017-06-12T14:56:58Z molecular_function owl:Class GO:0072764 biolink:NamedThing cellular response to reversine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reversine stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-11-09T11:52:22Z biological_process owl:Class GO:0010295 biolink:NamedThing (+)-abscisic acid 8'-hydroxylase activity Catalysis of the reaction: (+)-abscisate + H(+) + NADPH + O(2) = (+)-8'-hydroxyabscisate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl ABA 8'-hydroxylase activity|abscisic acid 8'-hydroxylase activity|abscisate,NADPH:oxygen oxidoreductase (8'-hydroxylating)|(+)-ABA 8'-hydroxylase activity|ABA 8'-Hydroxylase activity, Abscisate 8'-hydroxylase activity RHEA:12897|MetaCyc:1.14.13.93-RXN|KEGG_REACTION:R07202|EC:1.14.14.137 molecular_function owl:Class GO:1902584 biolink:NamedThing positive regulation of response to water deprivation Any process that activates or increases the frequency, rate or extent of response to water deprivation. tmpzr1t_l9r_go_relaxed.owl upregulation of drought tolerance|activation of response to dehydration|activation of response to drought|upregulation of response to water deprivation|activation of drought tolerance|positive regulation of response to dehydration|up regulation of response to water deprivation|up-regulation of drought tolerance|up-regulation of response to drought|positive regulation of response to thirst|positive regulation of drought tolerance|up regulation of response to drought|up-regulation of response to thirst|activation of response to thirst|up regulation of response to dehydration|upregulation of response to drought|upregulation of response to dehydration|activation of response to water deprivation|up regulation of drought tolerance|up regulation of response to thirst|positive regulation of response to drought|up-regulation of response to water deprivation|upregulation of response to thirst|up-regulation of response to dehydration tb 2013-12-19T00:31:58Z biological_process owl:Class GO:0003972 biolink:NamedThing RNA ligase (ATP) activity Catalysis of the reaction: ATP + ribonucleotide(n) + ribonucleotide(m) = AMP + diphosphate + ribonucleotide(n+m). tmpzr1t_l9r_go_relaxed.owl ribonucleic ligase activity|polyribonucleotide synthase (ATP) activity|polyribonucleotide ligase activity|poly(ribonucleotide):poly(ribonucleotide) ligase (AMP-forming) MetaCyc:RNA-LIGASE-ATP-RXN|EC:6.5.1.3|Reactome:R-HSA-5696816 molecular_function owl:Class GO:0018646 biolink:NamedThing 1-hydroxy-2-oxolimonene 1,2-monooxygenase activity Catalysis of the reaction: (1S,4R)-1-hydroxy-2-oxolimonene + NADPH + O2 = NADP+ + OH- + (3R)-3-isopropenyl-6-oxoheptanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0736|EC:1.14.13.- molecular_function owl:Class GO:0102160 biolink:NamedThing cyanidin-3-O-glucoside 2-O-glucuronosyltransferase activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + UDP-alpha-D-glucuronate <=> H+ + cyanidin 3-O-beta-(2-O-beta-D-glucuronosyl)-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.254|RHEA:28258|MetaCyc:RXN-11756 molecular_function owl:Class GO:0070680 biolink:NamedThing asparaginyl-tRNAAsn biosynthesis via transamidation A tRNA aminoacylation process in which asparaginyl-tRNAAsn is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating aspartyl-tRNA synthetase generates the misacylated L-aspartyl-tRNAAsn species, and in the second step it is amidated to the correctly charged L-asparaginyl-tRNAAsn by the heterotrimeric aspartyl-tRNAAsn amidotransferase. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY490-4 mah 2009-06-02T03:11:19Z biological_process owl:Class GO:0045458 biolink:NamedThing recombination within rDNA repeats Genetic recombination within the DNA of the genes coding for ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl recombination within ribosomal DNA repeats Note that this term was reinstated from obsolete. biological_process owl:Class GO:0140560 biolink:NamedThing xylosyl alpha-1,3-xylosyltransferase activity Catalyzes the reaction: UDP-alpha-D-xylose + [protein with EGF-like domain]-3-O-(alpha-D-xylosyl-(1->3)-beta-D-glucosyl)-L-serine <=> UDP + [protein with EGF-like domain]-3-O-(alpha-D-xylosyl-(1->3)-alpha-D-xylosyl-(1->3)-beta-D-glucosyl)-L-serine. The enzyme, found in animals and insects, is involved in the biosynthesis of the alpha-D-xylosyl-(1->3)-alpha-D-xylosyl-(1->3)- beta-D-glucosyl trisaccharide on epidermal growth factor-like (EGF- like) domains. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16869 RHEA:22820|EC:2.4.2.62 pg 2020-11-25T13:45:18Z molecular_function owl:Class GO:0019450 biolink:NamedThing L-cysteine catabolic process to pyruvate The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation to pyruvate|L-cysteine breakdown to pyruvate MetaCyc:LCYSDEG-PWY biological_process owl:Class GO:0061334 biolink:NamedThing cell rearrangement involved in Malpighian tubule morphogenesis The movement of an epithelial cell with respect to other epithelial cells that contributes to the shaping of the Malpighian tubule. tmpzr1t_l9r_go_relaxed.owl cell migration involved in Malpighian tubule morphogenesis dph 2010-09-28T02:04:05Z biological_process owl:Class GO:0034795 biolink:NamedThing cyclohexane monooxygenase activity Catalysis of the reaction: cyclohexane + O2 + NAD(P)H + H+ = cyclohexanol + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl cyclohexane hydroxylase activity|butane monooxygenase activity MetaCyc:RXN-8697|UM-BBD_reactionID:r1059|KEGG_REACTION:R06945|EC:1.14.15.- molecular_function owl:Class GO:0047406 biolink:NamedThing beta-aspartyl-N-acetylglucosaminidase activity Catalysis of the reaction: N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-D-glucosamine + L-asparagine. tmpzr1t_l9r_go_relaxed.owl 1-beta-aspartyl-N-acetyl-D-glucosaminylamine L-asparaginohydrolase activity|beta-aspartylacetylglucosaminidase activity KEGG_REACTION:R01266|RHEA:12324|EC:3.2.2.11|MetaCyc:3.2.2.11-RXN molecular_function owl:Class GO:0035705 biolink:NamedThing T-helper 17 cell chemotaxis The directed movement of a T-helper 17 cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl Th17 cell chemotaxis bf 2011-03-02T02:35:16Z biological_process owl:Class GO:0097002 biolink:NamedThing mitochondrial inner boundary membrane The portion of the mitochondrial inner membrane that is not invaginated to form cristae. The inner boundary membrane lies parallel to the outer membrane. tmpzr1t_l9r_go_relaxed.owl inner bounding mitochondrial membrane NIF_Subcellular:sao18461326 pr 2011-03-10T04:11:50Z cellular_component owl:Class GO:0018623 biolink:NamedThing benzoate 1,2-dioxygenase activity Catalysis of the reaction: benzoate + NADH + H+ + O2 = catechol + CO2 + NAD+. tmpzr1t_l9r_go_relaxed.owl benzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating, decarboxylating)|benzoate dioxygenase activity|benzoic hydroxylase activity|benzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating)|benzoate hydroxylase activity RHEA:12633|UM-BBD_enzymeID:e0154|EC:1.14.12.10|MetaCyc:BENZOATE-12-DIOXYGENASE-RXN molecular_function owl:Class GO:1904731 biolink:NamedThing positive regulation of intestinal lipid absorption Any process that activates or increases the frequency, rate or extent of intestinal lipid absorption. tmpzr1t_l9r_go_relaxed.owl up regulation of intestinal lipid absorption|activation of intestinal lipid absorption|up-regulation of intestinal lipid absorption|upregulation of intestinal lipid absorption sl 2015-10-14T15:25:10Z biological_process owl:Class GO:1990374 biolink:NamedThing Kir2 inward rectifier potassium channel complex A inward rectifier potassium channel complex. Homo- or heterotetramer composed of subunits of the eukaryotic Kir2 protein family. Plays a key role in maintaining the correct resting potential in eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl Kir2.1 complex An example of this is Kcnj2 in mouse (P35561) in PMID:16834334 (inferred from direct assay). bhm 2014-04-25T15:29:15Z cellular_component owl:Class GO:0072482 biolink:NamedThing response to mitotic cell cycle spindle orientation checkpoint signaling A process that occurs in response to signals generated as a result of mitotic cell cycle spindle orientation checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in mitotic cell cycle spindle orientation checkpoint|mitotic cell cycle spindle orientation checkpoint effector process mah 2010-12-09T12:11:56Z biological_process owl:Class GO:0140649 biolink:NamedThing cell-to-cell migration by invasive hypha The directional movement of a hyphal filament from one host cell to another. This process involves the clearance of plant-derived plasmodesmal occlusion materials, cytoskeleton based constriction of invasive hypha to traverse plasmodesmata. Septins and F-actin are reorganized into an hourglass shape at the point of maximum hyphal constriction. tmpzr1t_l9r_go_relaxed.owl host tissue colonization|invasive hyphae formation|plant tissue colonization|invasive growth https://github.com/geneontology/go-ontology/issues/21125 Do not confuse with ' GO:0036267 invasive filamentous growth ', which doesn't include invasion of cells within the host. pg 2021-05-25T07:42:38Z biological_process owl:Class GO:0050028 biolink:NamedThing L-lysine-lactamase activity Catalysis of the reaction: L-2-aminohexano-6-lactam + H(2)O = L-lysine. tmpzr1t_l9r_go_relaxed.owl L-alpha-aminocaprolactam hydrolase activity|L-lysine-1,6-lactam lactamhydrolase activity|L-lysinamidase activity RHEA:21388|KEGG_REACTION:R00463|EC:3.5.2.11|MetaCyc:L-LYSINE-LACTAMASE-RXN molecular_function owl:Class GO:0033065 biolink:NamedThing Rad51C-XRCC3 complex A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51C and XRCC3, or orthologs thereof. tmpzr1t_l9r_go_relaxed.owl CX3 complex cellular_component owl:Class GO:0000384 biolink:NamedThing first spliceosomal transesterification activity Catalysis of the first transesterification reaction of spliceosomal mRNA splicing. The intron branch site adenosine is the nucleophile attacking the 5' splice site, resulting in cleavage at this position. In cis splicing, this is the step that forms a lariat structure of the intron RNA, while it is still joined to the 3' exon. tmpzr1t_l9r_go_relaxed.owl lariat formation, 5'-splice site cleavage molecular_function owl:Class GO:0001691 biolink:NamedThing pseudophosphatase activity Maintains the phosphorylation state of certain molecules by associating with them and preventing them from associating with active phosphatases, and thus inhibiting the enzyme activity without interacting with the enzyme. Often pertains to proteins belonging to dual-specificity phosphatase family but lacking critical active site residues. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047618 biolink:NamedThing acylagmatine amidase activity Catalysis of the reaction: N(4)-benzoylagmatine + H(2)O = agmatine + benzoate. tmpzr1t_l9r_go_relaxed.owl benzoylagmatine amidohydrolase activity|acylagmatine amidohydrolase activity|acylagmatine deacylase activity RHEA:15065|KEGG_REACTION:R01425|MetaCyc:ACYLAGMATINE-AMIDASE-RXN|EC:3.5.1.40 molecular_function owl:Class GO:0090350 biolink:NamedThing negative regulation of cellular organofluorine metabolic process Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells. tmpzr1t_l9r_go_relaxed.owl tb 2010-06-02T10:36:42Z biological_process owl:Class GO:0003113 biolink:NamedThing positive regulation of heart rate by neuronal norepinephrine The process in which the secretion of norepinephrine released from nerve endings increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart rate by neuronal noradrenaline biological_process owl:Class GO:0106331 biolink:NamedThing sialate 4-O-acetylesterase activity Catalysis of the reaction: H2O + N-acetyl-4-O-acetylneuraminate = acetate + H(+) + N-acetylneuraminate. tmpzr1t_l9r_go_relaxed.owl RHEA:25564|EC:3.1.1.53 hjd 2020-09-30T19:40:24Z molecular_function owl:Class GO:0043273 biolink:NamedThing CTPase activity Catalysis of the reaction: CTP + H2O = CDP + phosphate. May or may not be coupled to another reaction. tmpzr1t_l9r_go_relaxed.owl CTPase activity, coupled|single-stranded DNA-dependent CTPase activity|cytidine triphosphatase activity https://github.com/geneontology/go-ontology/issues/19078 dph 2015-11-11T13:05:32Z GO:0061747|GO:0061748 molecular_function owl:Class GO:0102217 biolink:NamedThing 6-phosphoglucan, water dikinase activity Catalysis of the reaction: n ATP + n H2O + a 6-phosphogluco-maltodextrin = n AMP + n hydrogenphosphate + a poly-6-phosphogluco-maltodextrin. tmpzr1t_l9r_go_relaxed.owl RHEA:10256|EC:2.7.9.5|MetaCyc:RXN-12202 molecular_function owl:Class GO:0070331 biolink:NamedThing CD20-Lck-Fyn complex A protein complex that contains the cell-surface protein CD20 and the Src family tyrosine kinases Lck and Fyn. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0140561 biolink:NamedThing EGF-domain serine glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + [protein with EGF-like domain]-L-serine <=> UDP + [protein with EGF-like domain]-3-O-(beta-D-glucosyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16869 EC:2.4.1.376|RHEA:58116 pg 2020-11-25T14:19:23Z molecular_function owl:Class GO:0102512 biolink:NamedThing delphinidin 3-O-glucoside 5-O-glucosyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose <=> delphinidin 3-O-beta-D-glucoside-5-O-beta-D-glucoside betaine + vanillate + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.299|MetaCyc:RXN-14441 molecular_function owl:Class GO:0014846 biolink:NamedThing esophagus smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the esophagus. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The esophagus is the muscular membranous segment between the pharynx and the stomach in the upper gastrointestinal tract. tmpzr1t_l9r_go_relaxed.owl oesophagus smooth muscle contraction biological_process owl:Class GO:0102486 biolink:NamedThing dCTP phosphohydrolase activity Catalysis of the reaction: dCTP + 2 H2O = dCMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14198|EC:3.6.1.5 molecular_function owl:Class GO:0019964 biolink:NamedThing interferon-gamma binding Binding to interferon-gamma. Interferon gamma is the only member of the type II interferon found so far. tmpzr1t_l9r_go_relaxed.owl IFNG binding|IFN-gamma binding|type II interferon binding molecular_function owl:Class GO:0001965 biolink:NamedThing G-protein alpha-subunit binding Binding to a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide. tmpzr1t_l9r_go_relaxed.owl G-alpha protein subunit binding molecular_function owl:Class GO:0044808 biolink:NamedThing oncostatin M production The appearance of oncostatin M due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl OSM production jl 2013-09-11T12:18:00Z biological_process owl:Class GO:0018888 biolink:NamedThing 3-chloroacrylic acid metabolic process The chemical reactions and pathways involving 3-chloroacrylic acid, ClHC=CHCOOH, a chlorinated derivative of acrylic acid. tmpzr1t_l9r_go_relaxed.owl 3-chloroacrylic acid metabolism UM-BBD_pathwayID:caa biological_process owl:Class GO:0031250 biolink:NamedThing anaerobic ribonucleoside-triphosphate reductase complex An enzyme complex composed of 4 subunits, 2 copies of the large protein (nrdD in E. coli) and 2 copies of the small protein (nrdG in E. coli). It catalyzes the generation of 2'deoxyribonucleotides under anaerobic growth conditions. The larger subunit is the catalytic unit that is activated by the smaller iron-binding subunit. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097412 biolink:NamedThing hyaline inclusion A glass-like, pale intracellular inclusion. tmpzr1t_l9r_go_relaxed.owl pale body NIF_Subcellular:nlx_subcell_20090104 pr 2012-11-06T16:24:58Z cellular_component owl:Class GO:0043997 biolink:NamedThing histone acetyltransferase activity (H4-K12 specific) Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 12) = CoA + histone H4 N6-acetyl-L-lysine (position 12). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H4-K12 specific) molecular_function owl:Class GO:0008413 biolink:NamedThing 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity Catalysis of the reaction: 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) + H2O = 8-oxo-7,8-dihydroguanosine diphosphate (8-oxo-GDP) + phosphate. 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) is the oxidised form of the free guanine nucleotide and can act as a potent mutagenic substrate for transcription. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydro-8-oxoguanine-triphosphatase activity|8-oxo-7,8-dihydroguanosine triphosphatase activity|8-oxo-GTPase activity|8-oxo-7,8-dihydroguanine triphosphatase activity EC:3.6.1.69|RHEA:60032 molecular_function owl:Class GO:0102954 biolink:NamedThing dalcochinase activity Catalysis of the reaction: dalcochinin-8'-O-beta-glucoside + H2O <=> dalcochinin + D-glucopyranose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9162 molecular_function owl:Class GO:0018498 biolink:NamedThing 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase activity Catalysis of the reaction: cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ = NADH + H+ + 3-(2,3-dihydroxyphenyl)propionate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PHENPRODIOLDEHYDROG-RXN|RHEA:25062|UM-BBD_enzymeID:e0308 molecular_function owl:Class GO:0009779 biolink:NamedThing noncyclic photosynthetic phosphorylation A photosynthetic phosphorylation process in which ATP synthesis is linked to the transport of electrons from water to NADP+ with the production of NADPH and dioxygen (O2). Involves photosystem I and photosystem II. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038141 biolink:NamedThing ERBB4-ERBB4 complex A homodimeric complex containing two monomers of the tyrosine kinase receptor ERBB4 (also called HER4). tmpzr1t_l9r_go_relaxed.owl ERBB4 homodimer bf 2012-03-30T02:06:20Z cellular_component owl:Class GO:0000310 biolink:NamedThing xanthine phosphoribosyltransferase activity Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + xanthine = (9-D-ribosylxanthine)-5'-phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl xanthosine 5'-phosphate pyrophosphorylase activity|5-phospho-alpha-D-ribose-1-diphosphate:xanthine phospho-D-ribosyltransferase activity|xanthylate pyrophosphorylase activity|xanthine-guanine phosphoribosyltransferase activity|XMP pyrophosphorylase activity|XMP:diphosphate 5-phospho-alpha-D-ribosyltransferase activity|Xan phosphoribosyltransferase activity|xanthylic pyrophosphorylase activity RHEA:10800|EC:2.4.2.22|MetaCyc:XANPRIBOSYLTRAN-RXN GO:0009043 molecular_function owl:Class GO:0001650 biolink:NamedThing fibrillar center A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures. tmpzr1t_l9r_go_relaxed.owl fibrillar centre cellular_component owl:Class GO:0004001 biolink:NamedThing adenosine kinase activity Catalysis of the reaction: ATP + adenosine = ADP + AMP. tmpzr1t_l9r_go_relaxed.owl adenosine kinase (phosphorylating)|ATP:adenosine 5'-phosphotransferase activity|adenosine 5-phosphotransferase activity MetaCyc:ADENOSINE-KINASE-RXN|EC:2.7.1.20|Reactome:R-HSA-109624|RHEA:20824 molecular_function owl:Class GO:0005297 biolink:NamedThing proline:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: proline(out) + H+(out) = proline(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl hydrogen/proline transporter molecular_function owl:Class GO:0052810 biolink:NamedThing 1-phosphatidylinositol-5-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = a 1-phosphatidyl-1D-myo-inositol 5-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol 5-kinase activity|ATP:1-phosphatidyl-1D-myo-inositol 5-phosphotransferase activity Reactome:R-HSA-1675810|RHEA:44680|Reactome:R-HSA-1675866 ai 2011-10-21T03:37:20Z molecular_function owl:Class GO:0003979 biolink:NamedThing UDP-glucose 6-dehydrogenase activity Catalysis of the reaction: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.22|MetaCyc:UGD-RXN|RHEA:23596|KEGG_REACTION:R00286|Reactome:R-HSA-173597 molecular_function owl:Class GO:0035277 biolink:NamedThing spiracle morphogenesis, open tracheal system The process in which the anatomical structures of a spiracle are generated and organized. Spiracles are the openings in the insect open tracheal system; externally they connect to the epidermis and internally they connect to the tracheal trunk. tmpzr1t_l9r_go_relaxed.owl spiracle morphogenesis biological_process owl:Class GO:0097123 biolink:NamedThing cyclin A1-CDK2 complex A protein complex consisting of cyclin A1 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:43:18Z cellular_component owl:Class GO:0061604 biolink:NamedThing molybdopterin-synthase sulfurtransferase activity Catalysis of the reaction: [Molybdopterin-synthase sulfur-carrier protein]-Gly-Gly-AMP + [cysteine desulfurase]-S-sulfanyl-L-cysteine <=> AMP [molybdopterin-synthase sulfur-carrier protein]-Gly-NH-CH(2)-C(O)SH + cysteine desulfurase. tmpzr1t_l9r_go_relaxed.owl RHEA:48612|EC:2.8.1.11 dph 2014-02-11T11:56:16Z molecular_function owl:Class GO:0009345 biolink:NamedThing glycine-tRNA ligase complex A multimeric enzyme complex which, in bacteria, is usually a tetramer of two alpha and two beta chains and in eukaryotes, is usually a homodimer. Functions in the ligation of glycine and tRNA(Gly) to form glycyl-tRNA(Gly). tmpzr1t_l9r_go_relaxed.owl glycine-tRNA synthetase complex cellular_component owl:Class GO:0047539 biolink:NamedThing 2-deoxyglucosidase activity Catalysis of the reaction: H2O + a 2-deoxy-alpha-D-glucoside = 2-deoxy-D-glucose + an alcohol. tmpzr1t_l9r_go_relaxed.owl 2-deoxy-alpha-glucosidase activity|2-deoxy-alpha-D-glucosidase activity|2-deoxy-alpha-D-glucoside deoxyglucohydrolase activity MetaCyc:2-DEOXYGLUCOSIDASE-RXN|RHEA:15317|EC:3.2.1.112 molecular_function owl:Class GO:0010344 biolink:NamedThing seed oilbody biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a seed oilbody. Seed oilbodies are simple organelles comprising a matrix of triglyceride surrounded by a phospholipid monolayer embedded and covered with unique proteins called oleosins. Seed oilbodies supply the energy requirements for the growth of the seedling after germination. tmpzr1t_l9r_go_relaxed.owl seed oil body organization|spherosome biogenesis|oleosome biogenesis biological_process owl:Class GO:1902556 biolink:NamedThing phosphatidylinositol transporter complex A protein complex which is capable of phosphatidylinositol transporter activity. tmpzr1t_l9r_go_relaxed.owl Ire1 complex homodimer|Ire1 complex homooligomer|Ire1 complex dimer An example is PDR16 in S. cerevisiae (UniProt ID P53860) in PMID:9890948 (inferred from direct assay). bhm 2013-12-06T16:12:25Z cellular_component owl:Class GO:0050388 biolink:NamedThing uronate dehydrogenase activity Catalysis of the reaction: D-galacturonate + H(2)O + NAD(+) = galactarate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl uronate:NAD+ 1-oxidoreductase activity|uronic acid dehydrogenase activity|uronate: NAD-oxidoreductase activity RHEA:22404|MetaCyc:URONATE-DEHYDROGENASE-RXN|EC:1.1.1.203|KEGG_REACTION:R01981 molecular_function owl:Class GO:0046965 biolink:NamedThing retinoid X receptor binding Binding to a retinoid X receptor. tmpzr1t_l9r_go_relaxed.owl RXR binding molecular_function owl:Class GO:0042974 biolink:NamedThing retinoic acid receptor binding Binding to a retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily. tmpzr1t_l9r_go_relaxed.owl RAR binding molecular_function owl:Class GO:0060210 biolink:NamedThing metestrus The estrous cycle phase in which there is subsiding follicular function. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0070671 biolink:NamedThing response to interleukin-12 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-12 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-12 mah 2009-05-29T10:02:31Z biological_process owl:Class GO:0030603 biolink:NamedThing oxaloacetase activity Catalysis of the reaction: H(2)O + oxaloacetate = acetate + H(+) + oxalate. tmpzr1t_l9r_go_relaxed.owl oxalacetic hydrolase activity|oxaloacetate acetylhydrolase activity EC:3.7.1.1|MetaCyc:OXALOACETASE-RXN|RHEA:24432|KEGG_REACTION:R00338 molecular_function owl:Class GO:0003977 biolink:NamedThing UDP-N-acetylglucosamine diphosphorylase activity Catalysis of the reaction: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine. tmpzr1t_l9r_go_relaxed.owl uridine diphosphate-N-acetylglucosamine pyrophosphorylase activity|UTP:N-acetyl-alpha-D-glucosamine-1-phosphate uridylyltransferase activity|N-acetylglucosamine-1-phosphate uridyltransferase activity|uridine diphosphoacetylglucosamine pyrophosphorylase activity|GlmU uridylyltransferase activity|acetylglucosamine 1-phosphate uridylyltransferase|UDP-acetylglucosamine pyrophosphorylase activity|uridine diphosphoacetylglucosamine phosphorylase activity|UDP-GlcNAc pyrophosphorylase activity|UDP-N-acetylglucosamine pyrophosphorylase activity|UTP:2-acetamido-2-deoxy-alpha-D-glucose-1-phosphate uridylyltransferase activity KEGG_REACTION:R00416|Reactome:R-HSA-446204|MetaCyc:NAG1P-URIDYLTRANS-RXN|EC:2.7.7.23|RHEA:13509 molecular_function owl:Class GO:0010068 biolink:NamedThing protoderm histogenesis The formation of the primary meristem or meristematic tissue that gives rise to the epidermis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047719 biolink:NamedThing indole 2,3-dioxygenase activity Catalysis of the reaction: indole + O(2) = 2-formamidobenzaldehyde. tmpzr1t_l9r_go_relaxed.owl indole:O2 oxidoreductase activity|indole-oxygen 2,3-oxidoreductase (decyclizing)|IDO|indole:oxygen 2,3-oxidoreductase (decyclizing)|indole oxidase activity MetaCyc:INDOLE-23-DIOXYGENASE-RXN|RHEA:11212|KEGG_REACTION:R02338|EC:1.13.11.17 molecular_function owl:Class GO:0097582 biolink:NamedThing dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex A protein dimer complex that possesses dolichyl-phosphate-mannose-protein mannosyltransferase activity and, in S. cerevisiae, is composed of Pmt1p-Pmt2p. tmpzr1t_l9r_go_relaxed.owl Pmt1p-Pmt2p complex pr 2014-03-02T18:13:34Z cellular_component owl:Class GO:0120117 biolink:NamedThing T cell meandering migration The random-like motility observed for T cells in lymph nodes which enhances surveillance of antigens presented by major histocompatibility complex (MHC) molecules on antigen presenting cells (APCs). tmpzr1t_l9r_go_relaxed.owl lymph node surveillance|T cell meandering search krc 2017-11-22T18:13:01Z biological_process owl:Class GO:0097270 biolink:NamedThing dishabituation The temporary recovery of response to a stimulus when a novel stimulus is added. tmpzr1t_l9r_go_relaxed.owl pr 2012-03-20T01:39:25Z biological_process owl:Class GO:0002100 biolink:NamedThing tRNA wobble adenosine to inosine editing The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099005 biolink:NamedThing extrinsic component of postsynaptic recycling endosome membrane The component of the postsynaptic recycling endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098931 biolink:NamedThing virion attachment to host cell flagellum The process by which a virion attaches to a the host cell flagellum. Some DNA bacterial viruses use flagella to attach to the host cell. This contact with the flagellum facilitates concentration of phage particles around the entry receptor on the bacterial cell surface. tmpzr1t_l9r_go_relaxed.owl VZ:3949 biological_process owl:Class GO:0035695 biolink:NamedThing mitophagy by induced vacuole formation The process in which cells degrade mitochondria by inducing a vacuole-like structure which directly engulfs and degrades the unhealthy mitochondria by accumulating lysosomes. tmpzr1t_l9r_go_relaxed.owl MIV-mediated mitophagy In this mechanism of mitochondrion degradation, the mitochondrion is directly engulfed by a lysosome-like vacuole. It is therefore distinct from canonical autophagy, which is mediated by a double-membrane autophagosome. bf 2011-02-28T03:01:04Z biological_process owl:Class GO:0006707 biolink:NamedThing cholesterol catabolic process The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. tmpzr1t_l9r_go_relaxed.owl cholesterol catabolism|cholesterol breakdown|cholesterol degradation biological_process owl:Class GO:0098511 biolink:NamedThing sensory perception of low humidity The series of events required for an organism to detect low environmental humidity, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process. tmpzr1t_l9r_go_relaxed.owl dos 2013-09-25T14:02:02Z biological_process owl:Class GO:0050057 biolink:NamedThing linamarin synthase activity Catalysis of the reaction: UDP-glucose + 2-hydroxy-2-methylpropanenitrile = UDP + linamarin. tmpzr1t_l9r_go_relaxed.owl UDPglucose:ketone cyanohydrin beta-glucosyltransferase activity|uridine diphosphate-glucose-ketone cyanohydrin beta-glucosyltransferase activity|UDP-glucose:2-hydroxy-2-methylpropanenitrile beta-D-glucosyltransferase activity|UDPglucose:2-hydroxy-2-methylpropanenitrile beta-D-glucosyltransferase activity|uridine diphosphoglucose-ketone cyanohydrin glucosyltransferase activity|uridine diphosphoglucose-ketone glucosyltransferase activity|UDP glucose ketone cyanohydrin glucosyltransferase activity RHEA:20009|MetaCyc:LINAMARIN-SYNTHASE-RXN|EC:2.4.1.63 molecular_function owl:Class GO:1904313 biolink:NamedThing response to methamphetamine hydrochloride Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methamphetamine hydrochloride stimulus. tmpzr1t_l9r_go_relaxed.owl response to methamphetamine HCL sl 2015-06-10T17:47:09Z biological_process owl:Class GO:0103072 biolink:NamedThing straight chain (R)-2-hydroxy fatty acyl-CoA lyase activity Catalysis of the reaction: a (R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acyl CoA = formyl-CoA + an odd numbered straight chain 2,3,4-saturated fatty aldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN66-475 molecular_function owl:Class GO:0047776 biolink:NamedThing citramalate lyase activity Catalysis of the reaction: S-citramalate = acetate + pyruvate. tmpzr1t_l9r_go_relaxed.owl (+)-citramalate pyruvate-lyase activity|citramalic-condensing enzyme|(S)-citramalate lyase activity|citramalate synthetase activity|citramalic synthase activity|(3S)-citramalate pyruvate-lyase activity|citramalate pyruvate-lyase activity|(3S)-citramalate pyruvate-lyase (acetate-forming)|citramalate pyruvate lyase activity MetaCyc:CITRAMALATE-LYASE-RXN|EC:4.1.3.22|RHEA:15545|KEGG_REACTION:R00325 molecular_function owl:Class GO:0014897 biolink:NamedThing striated muscle hypertrophy The enlargement or overgrowth of all or part of an organ due to an increase in size of muscle cells without cell division. In the case of striated muscle, this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0089707 biolink:NamedThing L-lysine transmembrane export from vacuole The directed movement of L-lysine out of the vacuole, across the vacuolar membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010335 biolink:NamedThing response to non-ionic osmotic stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000170 biolink:NamedThing sphingosine hydroxylase activity Catalysis of the hydroxylation of sphingolipid long chain bases. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-428260 molecular_function owl:Class GO:0033886 biolink:NamedThing cellulose-polysulfatase activity Catalysis of the hydrolysis of the 2- and 3-sulfate groups of the polysulfates of cellulose and charonin. tmpzr1t_l9r_go_relaxed.owl cellulose-sulfate sulfohydrolase activity EC:3.1.6.7|MetaCyc:3.1.6.7-RXN molecular_function owl:Class GO:0004167 biolink:NamedThing dopachrome isomerase activity Catalysis of the reaction: L-dopachrome = 5,6-dihydroxyindole-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl dopachrome-rearranging enzyme|DCF activity|dopachrome Delta(7),Delta(2)-isomerase activity|dopachrome rearranging enzyme activity|dopachrome oxidoreductase activity|dopachrome conversion activity|TRP2|L-dopachrome isomerase activity|TRP-2|L-dopachrome keto-enol isomerase activity|dopachrome tautomerase activity|TRP-1|TRP activity|dopachrome keto-enol isomerase activity|L-dopachrome-methyl ester tautomerase activity|dopachrome delta-isomerase activity|tryosinase-related protein-2|tyrosinase-related protein 2 activity|dopachrome delta7,Delta2-isomerase activity|dopachrome conversion factor activity|DCT activity KEGG_REACTION:R03673|RHEA:13041|MetaCyc:DOPACHROME-DELTA-ISOMERASE-RXN|EC:5.3.3.12 GO:0048059 molecular_function owl:Class GO:0047250 biolink:NamedThing 4-hydroxybenzoate 4-O-beta-D-glucosyltransferase activity Catalysis of the reaction: 4-hydroxybenzoate + UDP-D-glucose = 4-(beta-D-glucosyloxy)benzoate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucose-4-hydroxybenzoate glucosyltransferase activity|PHB-O-glucosyltransferase activity|UDP-glucose:4-hydroxybenzoate 4-O-beta-D-glucosyltransferase activity|PHB glucosyltransferase activity|p-hydroxybenzoate glucosyltransferase activity|UDP-glucose:4-(beta-D-glucopyranosyloxy)benzoic acid glucosyltransferase activity|UDPglucose:4-hydroxybenzoate 4-O-beta-D-glucosyltransferase activity|HBA glucosyltransferase activity KEGG_REACTION:R01304|EC:2.4.1.194|MetaCyc:2.4.1.194-RXN|RHEA:15153 molecular_function owl:Class GO:0034529 biolink:NamedThing 2-hydroxy-3-carboxy-benzalpyruvate hydratase-aldolase activity Catalysis of the reaction: 2-hydroxy-3-carboxybenzalpyruvate + H2O = 3-formylsalicylic acid + pyruvate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0792 molecular_function owl:Class GO:0000432 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter by glucose Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription from RNA polymerase II promoter by glucose|stimulation of transcription from RNA polymerase II promoter by glucose|up regulation of transcription from RNA polymerase II promoter by glucose|activation of transcription from RNA polymerase II promoter by glucose|upregulation of transcription from RNA polymerase II promoter by glucose biological_process owl:Class GO:0050268 biolink:NamedThing coniferyl-alcohol dehydrogenase activity Catalysis of the reaction: coniferyl alcohol + NADP+ = coniferyl aldehyde + NADPH. tmpzr1t_l9r_go_relaxed.owl coniferyl-alcohol:NADP+ oxidoreductase activity EC:1.1.1.194|MetaCyc:RXN-2602|RHEA:22444 molecular_function owl:Class GO:0018003 biolink:NamedThing peptidyl-lysine N6-acetylation The acetylation of the peptidyl-lysine of proteins to form the derivative peptidyl-N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0055 See also the molecular function term 'tubulin N-acetyltransferase activity ; GO:0019799'. biological_process owl:Class GO:0043602 biolink:NamedThing nitrate catabolic process The chemical reactions and pathways resulting in the breakdown of nitrates, inorganic or organic salts and esters of nitric acid. tmpzr1t_l9r_go_relaxed.owl nitrate dissimilation|nitrate disassimilation biological_process owl:Class GO:0051071 biolink:NamedThing 4,6-pyruvylated galactose residue metabolic process The chemical reactions and pathways involving the pyruvylated galactose residue 4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3-. The galactose residue is part of a larger polysaccharide chain. tmpzr1t_l9r_go_relaxed.owl PvGal metabolic process|4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 metabolism|4,6-pyruvylated galactose residue metabolism|PvGal metabolism|4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 metabolic process biological_process owl:Class GO:0004176 biolink:NamedThing ATP-dependent peptidase activity Catalysis of the hydrolysis of peptide bonds, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent proteolysis https://github.com/geneontology/go-ontology/issues/21612 Reactome:R-HSA-9698929 GO:0004280 molecular_function owl:Class GO:0004760 biolink:NamedThing serine-pyruvate transaminase activity Catalysis of the reaction: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine. tmpzr1t_l9r_go_relaxed.owl hydroxypyruvate:L-alanine transaminase activity|serine-pyruvate aminotransferase, type 2B|serine-pyruvate aminotransferase activity|L-serine:pyruvate aminotransferase activity|serine-pyruvate aminotransferase, type 1|serine--pyruvate aminotransferase activity|SPT|serine-pyruvate aminotransferase, type 2A KEGG_REACTION:R00585|EC:2.6.1.51|MetaCyc:SERINE--PYRUVATE-AMINOTRANSFERASE-RXN|RHEA:22852 GO:0004762|GO:0004763|GO:0004761 molecular_function owl:Class GO:0031477 biolink:NamedThing myosin VII complex A myosin complex containing a dimer of class VII myosin heavy chains and associated light chains. Myosin VII (240 kDa) is predicted to be a dimeric molecule with 5 IQ motifs and a tail region with a short stretch of coiled coil followed by two myosin-tail homology (MyTH4) domains, two talin-binding (FERM) domains and an SH3-domain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904379 biolink:NamedThing protein localization to cytosolic proteasome complex involved in ERAD pathway Any protein localization to cytosolic proteasome complex that is involved in ERAD pathway. Following their retrotranslocation out of the endoplasmic reticulum, protein substrates must be shuttled to the cytosolic proteasome for degradation. tmpzr1t_l9r_go_relaxed.owl protein localization to cytosolic proteasome complex involved in endoplasmic reticulum-associated degradation|protein localization to cytosolic proteasome complex involved in endoplasmic reticulum-associated protein degradation pathway|protein localisation to cytosolic proteasome complex involved in ER-associated degradation pathway|protein localization in cytosolic proteasome complex involved in endoplasmic reticulum-associated protein degradation pathway|protein localisation in cytosolic proteasome complex involved in ER-associated degradation pathway|protein localisation to cytosolic proteasome complex involved in ERAD pathway|protein localisation in cytosolic proteasome complex involved in endoplasmic reticulum-associated degradation|protein localisation in cytosolic proteasome complex involved in endoplasmic reticulum-associated protein degradation pathway|protein localization in cytosolic proteasome complex involved in endoplasmic reticulum-associated degradation|protein localization to cytosolic proteasome complex involved in ER-associated degradation pathway|protein localisation to cytosolic proteasome complex involved in endoplasmic reticulum-associated degradation|protein localisation in cytosolic proteasome complex involved in ERAD pathway|protein localization in cytosolic proteasome complex involved in ERAD pathway|protein localisation to cytosolic proteasome complex involved in endoplasmic reticulum-associated protein degradation pathway|protein localization in cytosolic proteasome complex involved in ER-associated degradation pathway bf 2015-06-23T09:30:07Z biological_process owl:Class GO:0015248 biolink:NamedThing sterol transporter activity Enables the directed movement of sterols into, out of or within a cell, or between cells. Sterol are steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5250531|Reactome:R-HSA-8867667|RHEA:39747|Reactome:R-HSA-5679101|Reactome:R-HSA-5679145|Reactome:R-HSA-8868402|Reactome:R-HSA-265783 molecular_function owl:Class GO:0140293 biolink:NamedThing ADP-ribosylglutamate hydrolase activity Catalysis of the reaction: (ADP-D-ribosyl)-L-glutamyl-[protein] + H2O = L-glutamyl-[protein] + ADP-ribose. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T14:36:37Z molecular_function owl:Class GO:0039723 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity Any process in which a virus stops, prevents, or reduces a viral-induced cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of a host serine/threonine kinase TBK1. tmpzr1t_l9r_go_relaxed.owl inhibition of host TBK1 by virus|suppression by virus of host TBK1 activity https://github.com/geneontology/go-ontology/issues/21970 bf 2014-01-06T12:04:44Z biological_process owl:Class GO:2000309 biolink:NamedThing positive regulation of tumor necrosis factor (ligand) superfamily member 11 production Any process that activates or increases the frequency, rate or extent of tumor necrosis factor (ligand) superfamily member 11 production. tmpzr1t_l9r_go_relaxed.owl positive regulation of TNFSF11 production|positive regulation of RANKL production mah 2011-01-17T10:44:54Z biological_process owl:Class GO:0035165 biolink:NamedThing embryonic crystal cell differentiation The process in which an embryonic mesoderm-derived hemocyte precursor cell acquires the specialized features of a crystal cell. Crystal cells are a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042707 biolink:NamedThing ocellus photoreceptor cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into photoreceptor cell in the ocellus. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120139 biolink:NamedThing positive regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Any process that activates or increases the frequency, rate or extent of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. tmpzr1t_l9r_go_relaxed.owl krc 2018-03-22T16:24:20Z biological_process owl:Class GO:0061395 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. tmpzr1t_l9r_go_relaxed.owl dph 2011-12-14T08:53:20Z biological_process owl:Class GO:0061394 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. tmpzr1t_l9r_go_relaxed.owl dph 2011-12-14T08:48:36Z biological_process owl:Class GO:0030600 biolink:NamedThing feruloyl esterase activity Catalysis of the reaction: feruloyl-polysaccharide + H2O = ferulate + polysaccharide. tmpzr1t_l9r_go_relaxed.owl hydroxycinnamoyl esterase activity|hemicellulase accessory|cinnamoyl ester hydrolase activity|FAE-III|FAEA|ferulic acid esterase activity|cinnAE|FAE-II|4-hydroxy-3-methoxycinnamoyl-sugar hydrolase activity|FAE-I MetaCyc:3.1.1.73-RXN|EC:3.1.1.73 molecular_function owl:Class GO:0050419 biolink:NamedThing hydroxymandelonitrile lyase activity Catalysis of the reaction: 4-hydroxymandelonitrile = 4-hydroxybenzaldehyde + hydrocyanate. tmpzr1t_l9r_go_relaxed.owl sorghum hydroxynitrile lyase activity|hydroxynitrile lyase activity|(S)-4-hydroxymandelonitrile hydroxybenzaldehyde-lyase activity|(S)-4-hydroxymandelonitrile 4-hydroxybenzaldehyde-lyase (cyanide-forming) EC:4.1.2.11|RHEA:15977|MetaCyc:HYDROXYMANDELONITRILE-LYASE-RXN molecular_function owl:Class GO:0018547 biolink:NamedThing nitroglycerin reductase activity Catalysis of the removal of one or more nitrite (NO2-) groups from nitroglycerin or a derivative. tmpzr1t_l9r_go_relaxed.owl NG reductase activity UM-BBD_enzymeID:e0038 molecular_function owl:Class GO:0060067 biolink:NamedThing cervix development The reproductive developmental process whose specific outcome is the progression of the cervix over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl Mullerian tract development biological_process owl:Class GO:0036053 biolink:NamedThing glomerular endothelium fenestra A large plasma membrane-lined circular pore that perforates the flattened glomerular endothelium and, unlike those of other fenestrated capillaries, is not spanned by diaphragms; the density and size of glomerular fenestrae account, at least in part, for the high permeability of the glomerular capillary wall to water and small solutes. tmpzr1t_l9r_go_relaxed.owl glomerular endothelial cell fenestration|GEnC fenestration bf 2011-12-12T10:53:24Z cellular_component owl:Class GO:0050573 biolink:NamedThing dTDP-4-dehydro-6-deoxyglucose reductase activity Catalysis of the reaction: dTDP-D-fucose + NADP(+) = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl dTDP-D-fucose:NADP+ oxidoreductase activity|dTDP-4-keto-6-deoxyglucose reductase activity RHEA:36583|EC:1.1.1.266|MetaCyc:1.1.1.266-RXN|KEGG_REACTION:R05687 molecular_function owl:Class GO:0004038 biolink:NamedThing allantoinase activity Catalysis of the reaction: allantoin + H2O = allantoate. tmpzr1t_l9r_go_relaxed.owl (S)-allantoin amidohydrolase activity MetaCyc:ALLANTOINASE-RXN|RHEA:17029|EC:3.5.2.5 molecular_function owl:Class GO:0043854 biolink:NamedThing cyclic nucleotide-gated mechanosensitive ion channel activity Enables the transmembrane transfer of an ion by a channel that opens in response to a mechanical stress and when a cyclic nucleotide has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl cyclic nucleotide-regulated mechanosensitive ion channel|cyclic nucleotide regulated mechanosensitive ion channel|cyclic nucleotide gated mechanosensitive ion channel activity|MscS|small conductance mechanosensitive ion channel|cyclic nucleotide-regulated small mechanosensitive ion channel molecular_function owl:Class GO:0047176 biolink:NamedThing beta-glucogallin-tetrakisgalloylglucose O-galloyltransferase activity Catalysis of the reaction: 1,2,3,6-tetrakis-O-galloyl-beta-D-glucose + 1-O-galloyl-beta-D-glucose = 1,2,3,4,6-pentakis-O-galloyl-beta-D-glucose + D-glucose. tmpzr1t_l9r_go_relaxed.owl beta-glucogallin:1,2,3,6-tetra-O-galloyl-beta-D-glucose 4-O-galloyltransferase activity|beta-glucogallin-tetragalloylglucose 4-galloyltransferase activity|beta-glucogallin:1,2,3,6-tetra-O-galloylglucose 4-O-galloyltransferase activity|1-O-galloyl-beta-D-glucose:1,2,3,6-tetrakis-O-galloyl-beta-D-glucose 4-O-galloyltransferase activity KEGG_REACTION:R04498|EC:2.3.1.143|MetaCyc:2.3.1.143-RXN|RHEA:19109 molecular_function owl:Class GO:0080007 biolink:NamedThing S-nitrosoglutathione reductase activity Catalysis of the reaction: glutathione N-hydroxysulfenamide + NADH + H+ = S-nitrosoglutathione + NAD+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10742 molecular_function owl:Class GO:1904391 biolink:NamedThing response to ciliary neurotrophic factor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ciliary neurotrophic factor stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T19:13:04Z biological_process owl:Class GO:0016805 biolink:NamedThing dipeptidase activity Catalysis of the hydrolysis of a dipeptide. tmpzr1t_l9r_go_relaxed.owl cytosolic dipeptidase activity Reactome:R-HSA-5693783|Reactome:R-HSA-9026771|EC:3.4.13.-|Reactome:R-HSA-5433067|Reactome:R-HSA-266012 GO:0102008 molecular_function owl:Class GO:1905199 biolink:NamedThing manchette disassembly The disaggregation of a manchette into its constituent components. tmpzr1t_l9r_go_relaxed.owl krc 2016-05-12T15:19:16Z biological_process owl:Class GO:0004017 biolink:NamedThing adenylate kinase activity Catalysis of the reaction: ATP + AMP = 2 ADP. tmpzr1t_l9r_go_relaxed.owl myokinase activity|ATP:AMP phosphotransferase activity|adenylokinase activity|adenylic kinase activity|5'-AMP-kinase activity Reactome:R-HSA-110141|RHEA:12973|Reactome:R-HSA-74220|MetaCyc:ADENYL-KIN-RXN|Reactome:R-HSA-110144|Reactome:R-HSA-110145|EC:2.7.4.3 molecular_function owl:Class GO:0035061 biolink:NamedThing interchromatin granule A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs). tmpzr1t_l9r_go_relaxed.owl ICG NIF_Subcellular:sao1049471211 cellular_component owl:Class GO:0045439 biolink:NamedThing isopenicillin-N epimerase activity Catalysis of the reaction: isopenicillin N = penicillin N. tmpzr1t_l9r_go_relaxed.owl penicillin-N 5-amino-5-carboxypentanoyl-epimerase activity|isopenicillin N epimerase activity EC:5.1.1.17|KEGG_REACTION:R04147|RHEA:20033|MetaCyc:5.1.1.17-RXN molecular_function owl:Class GO:1901492 biolink:NamedThing positive regulation of lymphangiogenesis Any process that activates or increases the frequency, rate or extent of lymphangiogenesis. tmpzr1t_l9r_go_relaxed.owl upregulation of lymphangiogenesis|positive regulation of lymph vessel formation|up regulation of lymph vessel formation|activation of lymph vessel formation|activation of lymphangiogenesis|up regulation of lymphangiogenesis|up-regulation of lymph vessel formation|upregulation of lymph vessel formation|up-regulation of lymphangiogenesis dph 2012-10-15T13:08:25Z biological_process owl:Class GO:0044864 biolink:NamedThing positive regulation by virus of host cell division Any process where an infecting virus activates or increases the frequency, rate or extent of its host's cell division. tmpzr1t_l9r_go_relaxed.owl jl 2014-08-05T16:31:20Z biological_process owl:Class GO:0034564 biolink:NamedThing 4,4'-dihydroxy-alpha-methylstilbene dioxygenase activity Catalysis of the reaction: 4,4'-dihydroxy-alpha-methylstilbene + O2 = 4-hydroxybenzaldehyde + 4-hydroxyacetophenone + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0866 molecular_function owl:Class GO:0042809 biolink:NamedThing vitamin D receptor binding Binding to a vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes. tmpzr1t_l9r_go_relaxed.owl VDR binding|calciferol receptor binding molecular_function owl:Class GO:0097418 biolink:NamedThing neurofibrillary tangle Intracellular mass of paired, helically wound protein filaments (also called PHF) lying in the cytoplasm of neuronal cell bodies and neuritic cell processes. Neurofibrillary tangles contain an abnormally phosphorylated form of a microtubule-associated protein, tau. The shape of these inclusions may resemble a flame or a star. tmpzr1t_l9r_go_relaxed.owl flame-shaped neurofibrillary tangle|star-shaped neurofibrillary tangle NIF_Subcellular:nlx_subcell_20090202|NIF_Subcellular:sao2409833926|NIF_Subcellular:nlx_subcell_20090201 Neurofibrillary tangles have been found in aging population; their formation is increased in Alzheimer's disease patients (and in other neurological diseases) compared to normal controls (see PMID:848276 and PMID:8584267). pr 2012-11-06T16:49:35Z cellular_component owl:Class GO:0033981 biolink:NamedThing D-dopachrome decarboxylase activity Catalysis of the reaction: D-dopachrome + H(+) = 5,6-dihydroxyindole + CO(2). tmpzr1t_l9r_go_relaxed.owl D-dopachrome carboxy-lyase activity|phenylpyruvate tautomerase II activity|dopachrome conversion activity|D-dopachrome tautomerase activity|D-dopachrome carboxy-lyase (5,6-dihydroxyindole-forming) activity|dopachrome decarboxylase activity|D-tautomerase activity KEGG_REACTION:R07313|MetaCyc:4.1.1.84-RXN|RHEA:18441|EC:4.1.1.84 GO:0030928 molecular_function owl:Class GO:1905466 biolink:NamedThing negative regulation of G-quadruplex DNA unwinding Any process that stops, prevents or reduces the frequency, rate or extent of G-quadruplex DNA unwinding. tmpzr1t_l9r_go_relaxed.owl down regulation of G-quadruplex DNA unwinding|downregulation of G-quadruplex DNA unwinding|inhibition of G-quadruplex DNA unwinding|down-regulation of G-quadruplex DNA unwinding ans 2016-09-19T12:15:53Z biological_process owl:Class GO:0099089 biolink:NamedThing establishment of endoplasmic reticulum localization to postsynapse The directed movement of endoplasmic reticulum into a postsynaptic compartment such as a dendritic spine. tmpzr1t_l9r_go_relaxed.owl establishment of ER localization to postsynapse biological_process owl:Class GO:1904645 biolink:NamedThing response to amyloid-beta Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a amyloid-beta stimulus. tmpzr1t_l9r_go_relaxed.owl response to beta-amyloid|response to beta-amyloids sl 2015-08-31T20:44:43Z biological_process owl:Class GO:0010298 biolink:NamedThing dihydrocamalexic acid decarboxylase activity Catalysis of the reaction: dihydrocamalexic acid = camalexin + CO2 + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:34807|MetaCyc:RXN-8275 molecular_function owl:Class GO:1903229 biolink:NamedThing xanthosine biosynthetic process The chemical reactions and pathways resulting in the formation of xanthosine. tmpzr1t_l9r_go_relaxed.owl xanthosine anabolism|xanthosine synthesis|xanthosine biosynthesis|xanthosine formation jl 2014-07-31T09:21:58Z biological_process owl:Class GO:0033737 biolink:NamedThing 1-pyrroline dehydrogenase activity Catalysis of the reaction: 1-pyrroline + NAD+ + 2 H2O = 4-aminobutanoate + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl 1-pyrroline:NAD+ oxidoreductase activity|YdcW|ABALDH|gamma-aminobutyraldehyde dehydrogenase activity MetaCyc:1.5.1.35-RXN|EC:1.2.1.19 molecular_function owl:Class GO:0036436 biolink:NamedThing Isw1a complex An Isw1 complex that binds DNA and has nucleosome-stimulated ATPase activity. In S. cerevisiae, contains an Isw1p ATPase subunit in complex with Ioc3p. tmpzr1t_l9r_go_relaxed.owl bf 2013-09-18T16:45:41Z cellular_component owl:Class GO:0016587 biolink:NamedThing Isw1 complex A protein complex that contains an Isw1 subunit from the ISWI-family of ATPases and acts to modify chromatin structure. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0099150 biolink:NamedThing regulation of postsynaptic specialization assembly Any process that modulates the frequency, rate or extent of postsynaptic specialization assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization. tmpzr1t_l9r_go_relaxed.owl dos 2017-07-05T13:20:48Z biological_process owl:Class GO:0090204 biolink:NamedThing protein localization to nuclear pore A process in which a protein is transported to, or maintained in, a nuclear pore. tmpzr1t_l9r_go_relaxed.owl protein localisation to nuclear pore tb 2009-12-18T12:05:01Z biological_process owl:Class GO:0043203 biolink:NamedThing axon hillock Portion of the neuronal cell soma from which the axon originates. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao627227260|Wikipedia:Axon_hillock cellular_component owl:Class GO:0070386 biolink:NamedThing procollagen-proline 4-dioxygenase complex, alpha(I) type A procollagen-proline 4-dioxygenase complex that contains alpha subunits of the type I isoform; its activity is readily inhibited by poly(L-proline). tmpzr1t_l9r_go_relaxed.owl prolyl 4-hydroxylase complex (alpha(I)-type)|procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, alpha(I) type cellular_component owl:Class GO:0071076 biolink:NamedThing RNA 3' uridylation The enzymatic addition of a sequence of uridylyl residues at the 3' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-06T02:41:23Z biological_process owl:Class GO:0043489 biolink:NamedThing RNA stabilization Prevention of degradation of RNA molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120212 biolink:NamedThing sperm head-tail coupling apparatus A centrosome-based structure consisting of two cylindrical microtubule-based centrioles and associated components which anchors the flagellum to the sperm head. tmpzr1t_l9r_go_relaxed.owl HTCA|head-tail coupling apparatus krc 2019-06-07T23:08:46Z cellular_component owl:Class GO:1905225 biolink:NamedThing response to thyrotropin-releasing hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyrotropin-releasing hormone (TRH) stimulus. TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl response to TRH|response to protirelin pr 2016-06-07T12:11:28Z biological_process owl:Class GO:0047243 biolink:NamedThing flavanone 7-O-beta-glucosyltransferase activity Catalysis of the reaction: a flavanone + UDP-D-glucose = a flavanone 7-O-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucose-flavanone 7-O-glucosyltransferase activity|naringenin 7-O-glucosyltransferase activity|hesperetin 7-O-glucosyl-transferase activity|UDP-glucose:flavanone 7-O-beta-D-glucosyltransferase activity|UDPglucose:flavanone 7-O-beta-D-glucosyltransferase activity MetaCyc:2.4.1.185-RXN|EC:2.4.1.185 molecular_function owl:Class GO:0047588 biolink:NamedThing 5-aminopentanamidase activity Catalysis of the reaction: 5-aminopentanamide + H2O = 5-aminopentanoate + NH3. tmpzr1t_l9r_go_relaxed.owl 5-aminopentanamide amidohydrolase activity|5-aminovaleramidase activity|5-aminonorvaleramidase activity MetaCyc:5-AMINOPENTANAMIDASE-RXN|RHEA:15677|EC:3.5.1.30 molecular_function owl:Class GO:0072715 biolink:NamedThing cellular response to selenite ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a selenite ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-19T02:47:50Z biological_process owl:Class GO:0030755 biolink:NamedThing quercetin 3-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3,5,7,3',4'-pentahydroxyflavone = S-adenosyl-L-homocysteine + 3-methoxy-5,7,3',4'-tetrahydroxy-flavone. tmpzr1t_l9r_go_relaxed.owl flavonoid 3-methyltransferase activity|S-adenosyl-L-methionine:3,5,7,3',4'-pentahydroxyflavone 3-O-methyltransferase activity|flavonol 3-O-methyltransferase activity EC:2.1.1.76|RHEA:17673|MetaCyc:QUERCETIN-3-O-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0032296 biolink:NamedThing double-stranded RNA-specific ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in double-stranded RNA molecules. tmpzr1t_l9r_go_relaxed.owl dsRNA-specific RNase activity|double-stranded RNA-specific RNase activity|dsRNA-specific ribonuclease activity molecular_function owl:Class GO:0102444 biolink:NamedThing isorhamnetin 3-O-methyltransferase activity Catalysis of the reaction: isorhamnetin + S-adenosyl-L-methionine <=> 3,3'-dimethylquercetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13929 molecular_function owl:Class GO:0120249 biolink:NamedThing lateral wall of outer hair cell The lateral wall of an outer hair cell (OHC) is a unique trilaminate composite consisting of the plasma membrane, an underlying cytoskeletal network containing an actin-spectrin cortical lattice, and an adjacent system of circumferential lamellar organelles known as the subsurface cisternae. tmpzr1t_l9r_go_relaxed.owl outer hair cell lateral wall|OHC lateral wall|lateral wall of OHC krc 2020-08-27T23:53:44Z cellular_component owl:Class GO:0102116 biolink:NamedThing laurate hydroxylase activity Catalysis of the reaction: dodecanoate + NADPH + O2 + H+ <=> 11-hydroxylaurate + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11340 molecular_function owl:Class GO:0031423 biolink:NamedThing hexon binding Binding to a hexon, the major protein component of the icosahedral capsid of an adenovirus. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004110 biolink:NamedThing corticosteroid side-chain-isomerase activity Catalysis of the reaction: 11-deoxycorticosterone = 20-hydroxy-3-oxopregn-4-en-21-al. tmpzr1t_l9r_go_relaxed.owl 11-deoxycorticosterone aldose-ketose-isomerase activity|11-deoxycorticosterone ketol-isomerase activity EC:5.3.1.21|KEGG_REACTION:R04165|RHEA:17861|MetaCyc:CORTICOSTEROID-SIDE-CHAIN-ISOMERASE-RXN molecular_function owl:Class GO:0034569 biolink:NamedThing monodemethylisoproturon dehydrogenase activity Catalysis of the reaction: monodemethylisoproturon + H2O = hydroxymonodemethylisoproturon + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.17.99.-|UM-BBD_reactionID:r0893 molecular_function owl:Class GO:0032044 biolink:NamedThing DSIF complex A heterodimeric protein complex formed of Spt4 and Spt5 proteins which is expressed in eukaryotes from yeast to man. DSIF is an inhibitory elongation factor that promotes RNA polymerase II transcriptional pausing, but can also stimulate transcriptional elongation under certain conditions, and may play a role in RNA processing via its physical association with mRNA capping enzymes. tmpzr1t_l9r_go_relaxed.owl DRB sensitivity inducing factor complex|5,6-Dichloro-1-beta-D-ribofuranosylbenzimidazole sensitivity inducing factor complex|Spt5-Spt4 complex|Spt4-Spt5 complex cellular_component owl:Class GO:0031698 biolink:NamedThing beta-2 adrenergic receptor binding Binding to a beta-2 adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl beta-2 adrenergic receptor ligand molecular_function owl:Class GO:0055068 biolink:NamedThing cobalt ion homeostasis Any process involved in the maintenance of an internal steady state of cobalt ions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl cobalt homeostasis biological_process owl:Class GO:0003985 biolink:NamedThing acetyl-CoA C-acetyltransferase activity Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-methylacetoacetyl-CoA thiolase|acetyl coenzyme A thiolase activity|acetoacetyl-CoA thiolase activity|thiolase II|3-oxothiolase activity|acetyl-CoA:acetyl-CoA C-acetyltransferase activity|acetyl-CoA acetyltransferase activity|beta-acetoacetyl coenzyme A thiolase activity|acetyl-CoA:N-acetyltransferase activity Reactome:R-HSA-70844|Reactome:R-HSA-8848215|UM-BBD_enzymeID:e0144|RHEA:21036|EC:2.3.1.9|MetaCyc:ACETYL-COA-ACETYLTRANSFER-RXN|Reactome:R-HSA-73916|Reactome:R-HSA-74181 molecular_function owl:Class GO:0003988 biolink:NamedThing acetyl-CoA C-acyltransferase activity Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-methylacetoacetyl-CoA thiolase|beta-ketothiolase activity|3-ketoacyl coenzyme A thiolase activity|ketoacyl-CoA acyltransferase activity|ketoacyl-coenzyme A thiolase activity|pro-3-ketoacyl-CoA thiolase activity|beta-ketoacyl-CoA thiolase activity|3-ketoacyl CoA thiolase activity|2-keto-acyl thiolase activity|KAT|acyl-CoA:acetyl-CoA C-acyltransferase activity|3-ketoacyl thiolase activity|beta-ketoadipyl coenzyme A thiolase activity|3-ketothiolase activity|beta-ketoacyl coenzyme A thiolase activity|6-oxoacyl-CoA thiolase activity|acetyl-CoA acyltransferase activity|3-oxoacyl-coenzyme A thiolase activity|thiolase I|long-chain 3-oxoacyl-CoA thiolase activity|oxoacyl-coenzyme A thiolase activity|3-ketoacyl-CoA thiolase activity|3-oxoacyl-CoA thiolase activity|acetoacetyl-CoA beta-ketothiolase activity|beta-ketoadipyl-CoA thiolase activity EC:2.3.1.16|UM-BBD_reactionID:r1051|Reactome:R-HSA-390250|Reactome:R-HSA-77271|MetaCyc:KETOACYLCOATHIOL-RXN|Reactome:R-HSA-77304|Reactome:R-HSA-77329|Reactome:R-HSA-8874745|Reactome:R-HSA-77340|Reactome:R-HSA-77321|RHEA:21564|Reactome:R-HSA-77309 molecular_function owl:Class GO:1990195 biolink:NamedThing macrolide transmembrane transporter complex A bacterial transmembrane transporter complex that spans the entire cell membrane system and possesses ATP-dependent xenobiotic transport activity pumping drugs (typically antibiotics) and other toxins directly from the cytosol out of the bacterial cell. Typically, it is trimeric consisting of a inner membrane ATPase (IMP), a periplasmic membrane fusion protein (MFP) and an outer membrane factor (OMF). In E. coli, macrolide transporter complexes may consists of MacB (IMP), MacA (MFP) and TolC (OMF) or AcrB (IMP), AcrA (MFP) and TolC (OMF). Trimeric TolC is a common OMF found in many macrolide transporter complexes. tmpzr1t_l9r_go_relaxed.owl AcrAB-TolC complex|MacAB-TolC complex|macrolide transporter|macrolide transporter complex bhm 2013-09-23T11:22:26Z cellular_component owl:Class GO:0016401 biolink:NamedThing palmitoyl-CoA oxidase activity Catalysis of the reaction: palmitoyl-CoA + O2 = trans-2,3-dehydropalmitoyl-CoA + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl EC:1.3.3.- molecular_function owl:Class GO:0038063 biolink:NamedThing collagen-activated tyrosine kinase receptor signaling pathway A series of molecular signals initiated by the binding of collagen to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity. The pathway ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl collagen-activated RTK signaling pathway|DDR signaling pathway|discoidin domain receptor signaling pathway|collagen-activated tyrosine kinase receptor signalling pathway bf 2012-01-18T01:43:20Z biological_process owl:Class GO:1903600 biolink:NamedThing glutaminase complex A protein complex which is capable of glutaminase activity. tmpzr1t_l9r_go_relaxed.owl Sno1p-Snz1p ew 2014-11-11T18:41:42Z cellular_component owl:Class GO:0002930 biolink:NamedThing trabecular meshwork development The progression of the trabecular meshwork over time, from its formation to the mature structure. The trabecular meshwork is a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris. The trabecular meshwork provides drainage for the aqueous humor. tmpzr1t_l9r_go_relaxed.owl hjd 2012-04-19T04:50:06Z biological_process owl:Class GO:0070713 biolink:NamedThing RNA guanosine-cytidine insertion The modification of an RNA molecule by insertion of an guanosine-cytidine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RNA GC insertion mah 2009-06-08T05:31:43Z biological_process owl:Class GO:0071173 biolink:NamedThing spindle assembly checkpoint signaling A signaling process that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in spindle assembly checkpoint|SAC|spindle assembly checkpoint https://github.com/geneontology/go-ontology/issues/20935 Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of spindle assembly checkpoint (mitotic or meiotic). mah 2009-11-23T12:36:57Z GO:0072486 biological_process owl:Class GO:0034454 biolink:NamedThing microtubule anchoring at centrosome Any process in which a microtubule is maintained in a specific location in a cell by attachment to a centrosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060595 biolink:NamedThing fibroblast growth factor receptor signaling pathway involved in mammary gland specification The series of molecular signals initiated by binding of a fibroblast growth factor to its receptor on the surface of al cell in the epidermis resulting in the formation of the mammary line. The mammary line is a ridge of epidermal cells that will form the mammary placodes. tmpzr1t_l9r_go_relaxed.owl fibroblast growth factor receptor signalling pathway involved in mammary gland specification dph 2009-05-13T10:38:18Z biological_process owl:Class GO:0050872 biolink:NamedThing white fat cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole. tmpzr1t_l9r_go_relaxed.owl white adipocyte cell differentiation|white adipocyte differentiation biological_process owl:Class GO:0031740 biolink:NamedThing type A cholecystokinin receptor binding Binding to a type A cholecystokinin receptor. tmpzr1t_l9r_go_relaxed.owl type A cholecystokinin receptor ligand molecular_function owl:Class GO:0051874 biolink:NamedThing sphinganine-1-phosphate catabolic process The chemical reactions and pathways resulting in the breakdown of sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol. tmpzr1t_l9r_go_relaxed.owl dihydrosphingosine-1-phosphate catabolic process|dihydrosphingosine-1-phosphate catabolism biological_process owl:Class GO:0072225 biolink:NamedThing metanephric late distal convoluted tubule development The process whose specific outcome is the progression of the metanephric late distal convoluted tubule over time, from its formation to the mature structure. The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:37:04Z biological_process owl:Class GO:0043328 biolink:NamedThing protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway The process of directing proteins towards the vacuole that contributes to protein catabolism via the multivesicular body (MVB) pathway. tmpzr1t_l9r_go_relaxed.owl protein targeting to vacuole during ubiquitin-dependent protein degradation via the MVB pathway|protein targeting to vacuole during ubiquitin-dependent protein breakdown via the MVB pathway|protein-vacuole targeting during ubiquitin-dependent protein catabolic process via the MVB pathway|protein vacuolar targeting during ubiquitin-dependent protein catabolism via the MVB pathway|protein-vacuole targeting during ubiquitin-dependent protein catabolism via the MVB pathway|protein-vacuolar targeting during ubiquitin-dependent protein degradation via the MVB pathway|protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway|protein vacuolar targeting during ubiquitin-dependent protein catabolic process via the MVB pathway|protein-vacuolar targeting during ubiquitin-dependent protein breakdown via the MVB pathway biological_process owl:Class GO:0004399 biolink:NamedThing histidinol dehydrogenase activity Catalysis of the reaction: L-histidinol + NAD+ = L-histidine + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:HISTOLDEHYD-RXN|RHEA:20641|MetaCyc:HISTALDEHYD-RXN|EC:1.1.1.23 molecular_function owl:Class GO:0008672 biolink:NamedThing 2-dehydro-3-deoxyglucarate aldolase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-glucarate = pyruvate + tartronate semialdehyde. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase (pyruvate-forming)|alpha-keto-beta-deoxy-D-glucarate aldolase activity|2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase activity|2-keto-3-deoxyglucarate aldolase activity EC:4.1.2.20|RHEA:10268|MetaCyc:KDGALDOL-RXN molecular_function owl:Class GO:0045505 biolink:NamedThing dynein intermediate chain binding Binding to an intermediate chain of the dynein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033866 biolink:NamedThing nucleoside bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar. tmpzr1t_l9r_go_relaxed.owl nucleoside bisphosphate formation|nucleoside bisphosphate anabolism|nucleoside bisphosphatehate synthesis|nucleoside bisphosphate biosynthesis biological_process owl:Class GO:0102109 biolink:NamedThing tricaffeoyl spermidine O-methyltransferase activity Catalysis of the reaction: tricaffeoyl spermidine + 3 S-adenosyl-L-methionine <=> 3 H+ + triferuloyl spermidine + 3 S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11261 molecular_function owl:Class GO:0048877 biolink:NamedThing homeostasis of number of retina cells Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in the retina. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004740 biolink:NamedThing pyruvate dehydrogenase (acetyl-transferring) kinase activity Catalysis of the reaction: ATP + pyruvate dehydrogenase (acetyl-transferring) = ADP + pyruvate dehydrogenase (acetyl-transferring) phosphate. tmpzr1t_l9r_go_relaxed.owl PDH kinase activity|pyruvate dehydrogenase kinase activity|PDK|PDHK|pyruvate dehydrogenase kinase (phosphorylating) activity Reactome:R-HSA-203946|RHEA:23052|EC:2.7.11.2|MetaCyc:2.7.11.2-RXN molecular_function owl:Class GO:0006710 biolink:NamedThing androgen catabolic process The chemical reactions and pathways resulting in the breakdown of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics. tmpzr1t_l9r_go_relaxed.owl androgen breakdown|androgen degradation|androgen catabolism biological_process owl:Class GO:0008209 biolink:NamedThing androgen metabolic process The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics. tmpzr1t_l9r_go_relaxed.owl androgen metabolism biological_process owl:Class GO:0060773 biolink:NamedThing flower phyllotactic patterning The radial pattern formation process that results in the formation of floral organ primordia around a central axis in a flower primordium. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T06:28:38Z biological_process owl:Class GO:0050495 biolink:NamedThing peptidyl-glycyl-phosphatidylethanolamine biosynthetic process from peptidyl-glycine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-glycine ethanolamide-linked phosphatide following hydrolysis of a glycyl-peptide bond, as in the cleavage of arginine from the carboxy-terminal of Apg8 followed by its amidation with phosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl peptidyl-glycyl-phosphatidylethanolamine anabolism from peptidyl-glycine|peptidyl-glycyl-phosphatidylethanolamine formation from peptidyl-glycine|peptidyl-glycyl-phosphatidylethanolamine synthesis from peptidyl-glycine RESID:AA0346 biological_process owl:Class GO:0008927 biolink:NamedThing mannonate dehydratase activity Catalysis of the reaction: D-mannonate = 2-dehydro-3-deoxy-D-gluconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl altronate hydrolase activity|mannonate hydrolyase activity|mannonic hydrolase activity|D-mannonate hydro-lyase activity|D-mannonate hydrolyase activity|altronic hydro-lyase activity|D-mannonate hydro-lyase (2-dehydro-3-deoxy-D-gluconate-forming) EC:4.2.1.8|RHEA:20097|KEGG_REACTION:R05606|MetaCyc:MANNONDEHYDRAT-RXN molecular_function owl:Class GO:0019470 biolink:NamedThing 4-hydroxyproline catabolic process The chemical reactions and pathways resulting in the breakdown of 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline. tmpzr1t_l9r_go_relaxed.owl 4-hydroxyproline degradation|4-hydroxyproline breakdown|4-hydroxyproline catabolism MetaCyc:HYDROXYPRODEG-PWY biological_process owl:Class GO:0008707 biolink:NamedThing 4-phytase activity Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = 1-myo-inositol 1,2,3,4,5-pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl myo-inositol-hexakisphosphate 6-phosphohydrolase activity|phytase activity|phytate 6-phosphatase activity|6-phytase (name based on 1L-numbering system and not 1D-numbering)|6-phytase activity MetaCyc:6-PHYT-RXN|RHEA:20960|EC:3.1.3.26 molecular_function owl:Class GO:0018524 biolink:NamedThing acetophenone carboxylase activity Catalysis of the reaction: acetophenone + CO2 = H+ + benzoyl acetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0033|EC:6.4.1.- GO:0018797 molecular_function owl:Class GO:0019412 biolink:NamedThing aerobic respiration, using hydrogen as electron donor The oxidation of hydrogen (H2) to water (H2O), using oxygen (O2) as the electron acceptor. A hydrogenase enzyme binds H2 and the hydrogen atoms are passed through an electron transfer chain to O2 to form water. tmpzr1t_l9r_go_relaxed.owl hydrogen oxidation MetaCyc:P283-PWY biological_process owl:Class GO:0008398 biolink:NamedThing sterol 14-demethylase activity Catalysis of the reaction: obtusifoliol + 3 O2 + 3 NADPH + 3 H+ = 4-alpha-methyl-5-alpha-ergosta-8,14,24(28)-trien-3-beta-ol + formate + 3 NADP+ + 3 H2O. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 51 activity|lanosterol 14-alpha-demethylase activity|cytochrome P450 CYP51|sterol 14-alpha-demethylase activity|sterol 14alpha-demethylase activity|obtusufoliol 14-demethylase activity|sterol,NADPH:oxygen oxidoreductase (14-methyl cleaving)|lanosterol 14-demethylase activity|lanosterol 14alpha-demethylase activity MetaCyc:1.14.13.70-RXN|Reactome:R-HSA-194678|EC:1.14.13.70|RHEA:14917 molecular_function owl:Class GO:0034338 biolink:NamedThing short-chain carboxylesterase activity Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion, where the carboxylic chain has 8 or fewer carbon atoms. tmpzr1t_l9r_go_relaxed.owl butyrate esterase activity|methylbutyrate esterase activity|propionyl esterase activity|short-chain esterase activity|monobutyrase activity|methylbutyrase activity|butyryl esterase activity molecular_function owl:Class GO:0102169 biolink:NamedThing pyocyanin hydroxylase activity Catalysis of the reaction: 5-methylphenazine-1-carboxylate + NADH + O2 + 2 H+ = pyocyanin + NAD + carbon dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.218|MetaCyc:RXN-11898|RHEA:48976 molecular_function owl:Class GO:0102139 biolink:NamedThing 2-hydroxy-6-oxo-6-(2'-aminophenyl)-hexa-2,4dienoate hydrolase activity Catalysis of the reaction: (2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoate + H2O <=> H+ + anthranilate + (2E)-2-hydroxypenta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl RHEA:27870|EC:3.7.1.13|MetaCyc:RXN-11543 molecular_function owl:Class GO:0000298 biolink:NamedThing endopolyphosphatase activity Catalysis of the reaction: polyphosphate + n H2O = (n+1) oligophosphate. The product contains 4 or 5 phosphate residues. tmpzr1t_l9r_go_relaxed.owl polymetaphosphatase activity|polyphosphate depolymerase activity|polyphosphate polyphosphohydrolase activity|metaphosphatase activity|polyphosphatase activity MetaCyc:ENDOPOLYPHOSPHATASE-RXN|EC:3.6.1.10|RHEA:22452 molecular_function owl:Class GO:0061701 biolink:NamedThing bacterial outer membrane vesicle A spherical, bilayered proteolipid vesicle released from gram-negative bacterial outer membranes. tmpzr1t_l9r_go_relaxed.owl dph 2015-05-07T13:53:47Z cellular_component owl:Class GO:0004810 biolink:NamedThing tRNA adenylyltransferase activity Catalysis of the reaction: ATP + tRNA(n) = diphosphate + tRNA(n+1). tmpzr1t_l9r_go_relaxed.owl transfer ribonucleic-terminal trinucleotide nucleotidyltransferase|transfer ribonucleic adenylyl (cytidylyl) transferase|CTP(ATP):tRNA nucleotidyltransferase|tRNA adenylyl(cytidylyl)transferase|-C-C-A pyrophosphorylase|ATP:tRNA adenylyltransferase activity|transfer ribonucleate nucleotidyltransferase|tRNA CCA-diphosphorylase activity|transfer-RNA nucleotidyltransferase|CCA-adding enzyme activity|ATP (CTP):tRNA nucleotidyltransferase|tRNA-nucleotidyltransferase activity|transfer ribonucleate adenyltransferase activity|transfer RNA adenylyltransferase|transfer ribonucleate adenylyltransferase|tRNA CCA-pyrophosphorylase activity|transfer ribonucleate cytidylyltransferase|ATP(CTP)-tRNA nucleotidyltransferase|transfer ribonucleic acid nucleotidyl transferase|ribonucleic cytidylyltransferase|ribonucleic cytidylic cytidylic adenylic pyrophosphorylase MetaCyc:TRNA-ADENYLYLTRANSFERASE-RXN|EC:2.7.7.72 molecular_function owl:Class GO:0018906 biolink:NamedThing methyl tert-butyl ether metabolic process The chemical reactions and pathways involving methyl tert-butyl ether, 2-methoxy-2-methylpropane. Methyl tert-butyl ether is a synthetic chemical which is mixed with gasoline for use in reformulated gasoline. It was first introduced as an additive for unleaded gasoline in the 1980s. It is also used as a laboratory reagent and a pharmaceutical agent. tmpzr1t_l9r_go_relaxed.owl methyl tert-butyl ether metabolism UM-BBD_pathwayID:mtb biological_process owl:Class GO:0050074 biolink:NamedThing malate-CoA ligase activity Catalysis of the reaction: ATP + malate + CoA = ADP + phosphate + malyl-CoA. tmpzr1t_l9r_go_relaxed.owl malate:CoA ligase (ADP-forming)|malyl-CoA synthetase activity|malyl coenzyme A synthetase activity|malate thiokinase activity EC:6.2.1.9|RHEA:26193|MetaCyc:MALATE--COA-LIGASE-RXN molecular_function owl:Class GO:0030631 biolink:NamedThing pyrrolysine incorporation The incorporation of pyrrolysine, also known as lysine methylamine methyltransferase cofactor adduct, into a peptide; uses a special tRNA that recognizes the UAG codon as a modified lysine, rather than as a termination codon. Pyrrolysine may be synthesized as a free amino acid or synthesized from a lysine charged tRNA before its incorporation; it is not a posttranslational modification of peptidyl-lysine; this modification is found in several Methanosarcina methylamine methyltransferases. tmpzr1t_l9r_go_relaxed.owl lysine methylamine methyltransferase cofactor adduct incorporation|monomethylamine methyltransferase cofactor lysine adduct incorporation RESID:AA0321 biological_process owl:Class GO:0045484 biolink:NamedThing L-lysine 6-transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-lysine = L-glutamate + allysine. tmpzr1t_l9r_go_relaxed.owl L-lysine transaminase activity|lysine epsilon-aminotransferase activity|L-lysine aminotransferase activity|lysine 6-aminotransferase activity|L-lysine:2-oxoglutarate 6-aminotransferase activity|lysine:2-ketoglutarate 6-aminotransferase activity|L-lysine-alpha-ketoglutarate 6-aminotransferase activity|lysine epsilon-transaminase activity|L-lysine-alpha-ketoglutarate aminotransferase activity KEGG_REACTION:R00457|MetaCyc:L-LYSINE-AMINOTRANSFERASE-RXN|RHEA:21200|EC:2.6.1.36 molecular_function owl:Class GO:0106387 biolink:NamedThing 'de novo' GMP biosynthetic process The chemical reactions and pathways resulting in the formation of guanosine 5'-monophosphate (GMP) through an inosine 5'-monophosphate (IMP) intermediate. tmpzr1t_l9r_go_relaxed.owl 'de novo' guanosine 5'-monophosphate biosynthetic process hjd 2021-07-07T17:27:01Z biological_process owl:Class GO:0098525 biolink:NamedThing excitatory neuromuscular junction of somatic myotube A neuromuscular junction that functions in the excitation of somatic muscle myotubes, such as an arthropod somatic muscle cells. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-14T12:06:08Z cellular_component owl:Class GO:0018111 biolink:NamedThing methionine racemase activity Catalysis of the reaction: L-methionine = D-methionine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:METHIONINE-RACEMASE-RXN|RHEA:12492|EC:5.1.1.2|KEGG_REACTION:R00655 molecular_function owl:Class GO:0031732 biolink:NamedThing CCR7 chemokine receptor binding Binding to a CCR7 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl MIP-3 beta receptor binding|type 1 EBV-induced G-protein coupled receptor binding|CCR7 chemokine receptor ligand molecular_function owl:Class GO:0102187 biolink:NamedThing 4alpha-carboxy,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol dehydrogenase/C4-decarboxylase activity Catalysis of the reaction: 4alpha-carboxy,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NAD(1-) <=> 4alpha,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3-one + NADH(2-) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11949 molecular_function owl:Class GO:0045033 biolink:NamedThing peroxisome inheritance The acquisition of peroxisomes by daughter cells from the mother cell after replication. In Saccharomyces cerevisiae, the number of peroxisomes cells is fairly constant; a subset of the organelles are targeted and segregated to the bud in a highly ordered, vectorial process. Efficient segregation of peroxisomes from mother to bud is dependent on the actin cytoskeleton, and active movement of peroxisomes along actin filaments is driven by the class V myosin motor protein, Myo2p. tmpzr1t_l9r_go_relaxed.owl Note that 'vectorial' is used in the definition in the mathematical and physical sense of pertaining to 'a quantity having direction as well as magnitude, especially as determining the position of one point in space relative to another. biological_process owl:Class GO:0015675 biolink:NamedThing nickel cation transport The directed movement of nickel (Ni) cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047219 biolink:NamedThing monoterpenol beta-glucosyltransferase activity Catalysis of the reaction: (-)-menthol + UDP-D-glucose = (-)-menthyl beta-D-glucoside + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:(-)-menthol O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-monoterpenol glucosyltransferase activity|UDPglucose:monoterpenol glucosyltransferase activity|UDP-glucose:(-)-menthol O-beta-D-glucosyltransferase activity EC:2.4.1.127|RHEA:11520|MetaCyc:2.4.1.127-RXN|KEGG_REACTION:R02179 molecular_function owl:Class GO:0048250 biolink:NamedThing iron import into the mitochondrion The process in which iron is transported from the cytosol into the mitochondrial matrix. tmpzr1t_l9r_go_relaxed.owl mitochondrial iron transport|mitochondrial iron ion transmembrane transport|mitochondrial iron ion transport|mitochondrial iron cation transmembrane transport al 2016-02-10T11:24:22Z GO:1990925 biological_process owl:Class GO:0033994 biolink:NamedThing glucuronan lyase activity Catalysis of the reaction: (1->4)-beta-D-glucuronan = an oligosaccharide with 4-deoxy-beta-D-gluc-4-enuronosyl end + (1->4)-beta-D-glucuronan. This reaction is the eliminative cleavage of (1->4)-beta-D-glucuronans to give oligosaccharides with 4-deoxy-beta-D-gluc-4-enuronosyl groups at their non-reducing ends. Complete degradation of glucuronans results in the formation of tetrasaccharides. tmpzr1t_l9r_go_relaxed.owl (1,4)-beta-D-glucuronan lyase activity EC:4.2.2.14|MetaCyc:4.2.2.14-RXN molecular_function owl:Class GO:0045210 biolink:NamedThing FasL biosynthetic process The chemical reactions and pathways resulting in the formation of fas ligand (FasL or CD95L), an antigen originally found to be expressed on the cell surface of activated human T-lymphocytes and B-lymphocytes and a variety of malignant human lymphoid cell lines. tmpzr1t_l9r_go_relaxed.owl FasL synthesis|FASLG biosynthetic process|FasL biosynthesis|APT1LG1 biosynthetic process|FasL formation|Fas-L biosynthetic process|CD95L biosynthesis|CD178 biosynthetic process|FasL anabolism|fas ligand biosynthetic process|CD95L biosynthetic process biological_process owl:Class GO:0102510 biolink:NamedThing pelargonidin 3-O-glucoside 5-O-glucosyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose <=> anthocyanidin 3,5-di-O-beta-D-glucoside + vanillate + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.299|MetaCyc:RXN-14439 molecular_function owl:Class GO:0044555 biolink:NamedThing negative regulation of heart rate in other organism Any process that stops, prevents or reduces the frequency of heart contraction of another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-29T03:01:20Z biological_process owl:Class GO:0071200 biolink:NamedThing Kv4.2-DPP6 channel complex A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.2. tmpzr1t_l9r_go_relaxed.owl Kv4.2-DPPX channel complex CORUM:603 mah 2009-11-23T05:18:31Z cellular_component owl:Class GO:0043904 biolink:NamedThing isochorismate pyruvate lyase activity Catalysis of the reaction: isochorismate = salicylate + pyruvate. tmpzr1t_l9r_go_relaxed.owl IPL|isochorismate-pyruvate lyase activity RHEA:27874|MetaCyc:RXN-1981|EC:4.2.99.21 molecular_function owl:Class GO:0005340 biolink:NamedThing nucleotide-sulfate transmembrane transporter activity Enables the transfer of nucleotide-sulfate from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl nucleotide-sulphate transporter activity GO:0005341 molecular_function owl:Class GO:0046821 biolink:NamedThing extrachromosomal DNA DNA structures that are not part of a chromosome. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Extrachromosomal_DNA cellular_component owl:Class GO:0043851 biolink:NamedThing methanol-specific methylcobalamin:coenzyme M methyltransferase activity Catalysis of the reaction: a methylated methanol corrinoid protein + coenzyme M = a methanol corrinoid protein + methyl-CoM. This reaction is the transfer of the methyl group from the methylated corrinoid cofactor of a methylamine corrinoid protein to coenzyme M. tmpzr1t_l9r_go_relaxed.owl MtaA|MtaC protein:coenzyme M methyltransferase activity|methanol-specific methylcobalamin:CoM methyltransferase activity|MtaC protein: coenzyme M methyltransferase activity|MT2|methanol-specific methylcobalamin: coenzyme M methyltransferase activity|methyltransferase 2 MetaCyc:RXN-8096 This function is the second step in the pathway of methanogenesis from methanol. molecular_function owl:Class GO:0030766 biolink:NamedThing 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 11-O-demethyl-17-O-deacetylvindoline = S-adenosyl-L-homocysteine + 17-O-deacetylvindoline. tmpzr1t_l9r_go_relaxed.owl 11-demethyl-17-deacetylvindoline 11-methyltransferase activity|tabersonine 16-O-methyltransferase activity|S-adenosyl-L-methionine:16-hydroxytabersonine 16-O-methyltransferase activity|S-adenosyl-L-methionine:11-O-demethyl-17-O-deacetylvindoline 11-O-methyltransferase activity RHEA:20992|EC:2.1.1.94|MetaCyc:2.1.1.94-RXN molecular_function owl:Class GO:0052637 biolink:NamedThing delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity Catalysis of the reaction: 1-18:3-3-16:0-phosphatidylglycerol = 1-18:3-3-trans-16:1-phosphatidylglycerol + 2 H+. This reaction is the formation of a trans double bond between carbon 3 and carbon 4 (counting from the carboxyl end) of palmitic acid, which is specifically esterified to the sn-2 glyceryl carbon of phosphatidylglycerol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003048 biolink:NamedThing regulation of systemic arterial blood pressure by norepinephrine The regulation of blood pressure mediated by the catecholamine signaling molecule norepinephrine. tmpzr1t_l9r_go_relaxed.owl regulation of blood pressure by noradrenaline|blood pressure regulation by norepinephrine biological_process owl:Class GO:0005044 biolink:NamedThing scavenger receptor activity Combining with any modified low-density lipoprotein (LDL) or other polyanionic ligand and delivering the ligand into the cell via endocytosis. Ligands include acetylated and oxidized LDL, Gram-positive and Gram-negative bacteria, apoptotic cells, amyloid-beta fibrils, and advanced glycation end products (AGEs). tmpzr1t_l9r_go_relaxed.owl macrophage receptor activity Note that many gene products that are called scavenger receptors have a broad range of potential ligands and also can be annotated to 'pattern recognition receptor activity ; GO:0038187' or its child terms, or to 'lipoprotein receptor activity ; GO:0030228' or its child terms. For receptors that transduce a signal rather than endocytose their ligand, consider instead the terms 'signaling receptor activity ; GO:0038023' and its children. molecular_function owl:Class GO:0071255 biolink:NamedThing Cvt vesicle assembly A vesicle organization process that takes place as part of the Cvt pathway, and results in the formation of a double membrane-bounded cytosolic structure that sequesters precursor aminopeptidase I (prAPI). tmpzr1t_l9r_go_relaxed.owl cytoplasm to vacuole targeting vesicle assembly|Cvt vesicle formation|Cvt vesicle biosynthesis|cytoplasm-to-vacuole targetin vesicle assembly mah 2009-12-04T10:39:50Z biological_process owl:Class GO:0010397 biolink:NamedThing apiogalacturonan metabolic process The chemical reactions and pathways involving the pectic apiogalacturonan, characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted with apiose and apiobiose (D-apiofuranosyl-beta-(1->3)-D-apiose) side chains via O-2 or O-3 links. tmpzr1t_l9r_go_relaxed.owl apiogalacturonan metabolism biological_process owl:Class GO:0006223 biolink:NamedThing uracil salvage Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043100 biolink:NamedThing pyrimidine nucleobase salvage Any process that generates pyrimidine nucleobases, 1,3-diazine organic nitrogenous bases, from derivatives of them without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl pyrimidine base salvage biological_process owl:Class GO:0003937 biolink:NamedThing IMP cyclohydrolase activity Catalysis of the reaction: IMP + H2O = 5-formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide. tmpzr1t_l9r_go_relaxed.owl IMP synthetase activity|inosinate cyclohydrolase activity|inosinicase activity|IMP 1,2-hydrolase (decyclizing) Reactome:R-HSA-73797|RHEA:18445|EC:3.5.4.10|MetaCyc:IMPCYCLOHYDROLASE-RXN molecular_function owl:Class GO:0015327 biolink:NamedThing cystine:glutamate antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: cystine(out) + glutamate(in) = cystine(in) + glutamate(out). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052778 biolink:NamedThing diacetylchitobiose metabolic process The chemical reactions and pathways involving diacetylchitobiose, the N,N'-diacetylated derivative of chitobiose. tmpzr1t_l9r_go_relaxed.owl diacetylchitobiose metabolism biological_process owl:Class GO:0052905 biolink:NamedThing tRNA (guanine(9)-N(1))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanine(9) in tRNA = N(1)-methylguanine(9) in tRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl tRNA(m(1)G(9)/m(1)A(9))Mtase activity|tRNA(m(1)G(9)/m(1)A(9))-methyltransferase activity|tRNA m(1)G(9) Mtase activity|tRNA m(1)G(9)-methyltransferase activity|tRNA (guanine-N(1)-)-methyltransferase activity RHEA:43156|MetaCyc:RXN-12459|EC:2.1.1.221 molecular_function owl:Class GO:1990386 biolink:NamedThing mitotic cleavage furrow ingression Advancement of the mitotic cleavage furrow from the outside of the cell inward towards the center of the cell. The cleavage furrow acts as a 'purse string' which draws tight to separate daughter cells during mitotic cytokinesis and partition the cytoplasm between the two daughter cells. The furrow ingresses until a cytoplasmic bridge is formed. tmpzr1t_l9r_go_relaxed.owl kmv 2014-05-29T20:58:27Z biological_process owl:Class GO:0009744 biolink:NamedThing response to sucrose Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. tmpzr1t_l9r_go_relaxed.owl response to sucrose stimulus biological_process owl:Class GO:0009319 biolink:NamedThing cytochrome o ubiquinol oxidase complex A protein complex that possesses cytochrome o ubiquinol oxidase activity; consists of four polypeptide subunits and associated prosthetic groups. tmpzr1t_l9r_go_relaxed.owl MetaCyc:CYT-O-UBIOX-CPLX See also the molecular function term 'cytochrome o ubiquinol oxidase activity ; GO:0008827'. cellular_component owl:Class GO:1904672 biolink:NamedThing regulation of somatic stem cell population maintenance Any process that modulates the frequency, rate or extent of somatic stem cell population maintenance. tmpzr1t_l9r_go_relaxed.owl rph 2015-09-14T08:40:19Z biological_process owl:Class GO:0140633 biolink:NamedThing CARD8 inflammasome complex assembly The aggregation, arrangement and bonding together of a set of components to form a CARD8 inflammasome complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21092 pg 2021-04-09T11:19:51Z biological_process owl:Class GO:0070225 biolink:NamedThing sulfide dehydrogenase activity Catalysis of the reaction: hydrogen sulfide + oxidized cytochrome c = S + reduced cytochrome c. tmpzr1t_l9r_go_relaxed.owl sulphide dehydrogenase activity|flavocytochrome c sulfide dehydrogenase activity EC:1.8.2.3|RHEA:30223|MetaCyc:RXN-8156 molecular_function owl:Class GO:0032408 biolink:NamedThing MutSbeta complex binding Binding to a MutSbeta mismatch repair complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005630 biolink:NamedThing dityrosine layer of spore wall The outermost layer of the spore wall, as described in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052727 biolink:NamedThing capsanthin synthase activity Catalysis of the reaction: antheraxanthin = capsanthin. tmpzr1t_l9r_go_relaxed.owl CCS|capsanthin-capsorubin synthase activity|ketoxanthophyll synthase activity MetaCyc:RXN-7947|EC:5.3.99.8|RHEA:17373 ai 2011-08-16T03:09:21Z molecular_function owl:Class GO:0071625 biolink:NamedThing vocalization behavior The behavior in which an organism produces sounds by a mechanism involving its respiratory system. tmpzr1t_l9r_go_relaxed.owl vocalisation behaviour mah 2010-02-10T11:02:58Z biological_process owl:Class GO:0102595 biolink:NamedThing cyanidin 7-O-(6-O-(4-O-(glucosyl)-oxybenzoyl)-glucoside) acyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-glucoside-7-O-(6-O-(4-O-(glucosyl)-oxybenzoyl)-glucoside) + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> cyanidin 3-O-glucoside-7-O-(6-O-(4-O-(6-O-(p-hydroxybenzoyl)-glucosyl)-oxybenzoyl)-glucoside) + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15374 molecular_function owl:Class GO:0099153 biolink:NamedThing synaptic transmission, serotonergic The vesicular release of serotonin from a presynapse, across a chemical synapse, the subsequent activation of serotonin receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. tmpzr1t_l9r_go_relaxed.owl serotonergic synaptic transmission dos 2017-07-05T14:16:51Z biological_process owl:Class GO:0005633 biolink:NamedThing ascus lipid droplet Any particle of coalesced lipids in an ascus or ascospore. May include associated proteins. tmpzr1t_l9r_go_relaxed.owl ascus lipid particle cellular_component owl:Class GO:0042469 biolink:NamedThing versicolorin reductase activity Catalysis of the reduction of versicolorin A to sterigmatocystin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000240 biolink:NamedThing diplotene The cell cycle phase which follows pachytene during prophase I of meiosis, during which the homologous chromosomes begin to separate and the synaptonemal complex dissolves. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Meiosis#Diplotene|Wikipedia:Diplotene Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0003681 biolink:NamedThing bent DNA binding Binding to DNA in a bent conformation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102385 biolink:NamedThing patchoulol synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> seychellene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13522 molecular_function owl:Class GO:0061930 biolink:NamedThing regulation of erythrocyte enucleation Any process that modulates the frequency, rate or extent of erythrocyte enucleation. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T12:48:05Z biological_process owl:Class GO:0032163 biolink:NamedThing hyphal septin band A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0062078 biolink:NamedThing TSC1-TSC2 complex binding Binding to a TSC1-TSC2 complex. tmpzr1t_l9r_go_relaxed.owl tuberin sclerosis complex binding|tuberin-hamartin complex binding dph 2018-10-11T12:31:42Z molecular_function owl:Class GO:0070771 biolink:NamedThing alphaIIb-beta3 integrin-CD47-Src complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase c-Src. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-CD47-SRC complex mah 2009-06-29T05:46:53Z cellular_component owl:Class GO:0046422 biolink:NamedThing violaxanthin de-epoxidase activity Catalysis of the reaction: violaxanthin + 2 ascorbate = zeaxanthin + 2 dehydroascorbate + 2 H2O; and antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O. tmpzr1t_l9r_go_relaxed.owl violaxanthin:ascorbate oxidoreductase activity|VDE EC:1.23.5.1|RHEA:32371 molecular_function owl:Class GO:0043810 biolink:NamedThing ornithine-acyl [acyl carrier protein] N-acyltransferase activity Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + L-ornithine = lyso-ornithine lipid + [acyl-carrier protein]. The enzyme, found in bacteria, catalyzes the first step in the biosynthesis of ornithine lipids. tmpzr1t_l9r_go_relaxed.owl ornithine-acyl[acyl carrier protein] N-acyltransferase activity|L-ornithine N(alpha)-acyltransferase RHEA:20633|EC:2.3.2.30 molecular_function owl:Class GO:0032426 biolink:NamedThing stereocilium tip A distinct compartment at the tip of a stereocilium, distal to the site of attachment to the apical cell surface. It consists of a dense matrix bridging the barbed ends of the stereocilium actin filaments with the overlying plasma membrane, is dynamic compared to the shaft, and is required for stereocilium elongation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052635 biolink:NamedThing C-20 gibberellin 2-beta-dioxygenase activity Catalysis of the reaction: a C-20 gibberellin + 2-oxoglutarate + O2 = a C-20 2-beta-hydroxygibberellin + succinate + CO2. C-20 gibberellin refers to a gibberellin with twenty carbons. tmpzr1t_l9r_go_relaxed.owl C-20 gibberellin 2-oxidase activity|C-20 gibberellin 2beta-dioxygenase activity|C-20 gibberellin 2-beta-hydroxylase activity|(C-20 gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating)|C(20) gibberellin 2-oxidase activity|C-20 gibberellin 2beta-hydroxylase activity|C-20 GA 2-oxidase activity molecular_function owl:Class GO:0005607 biolink:NamedThing laminin-2 complex A laminin complex composed of alpha2, beta1 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-211 complex cellular_component owl:Class GO:0004982 biolink:NamedThing N-formyl peptide receptor activity Combining with an N-formyl peptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Fmet-leu-phe receptor molecular_function owl:Class GO:1902391 biolink:NamedThing positive regulation of N-terminal peptidyl-serine acetylation Any process that activates or increases the frequency, rate or extent of N-terminal peptidyl-serine acetylation. tmpzr1t_l9r_go_relaxed.owl activation of N-terminal peptidyl-serine acetylation|up regulation of N-terminal peptidyl-serine acetylation|up-regulation of N-terminal peptidyl-serine acetylation|upregulation of N-terminal peptidyl-serine acetylation al 2013-09-11T14:46:54Z biological_process owl:Class GO:0097432 biolink:NamedThing hippocampal pyramidal neuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a hippocampal pyramidal neuron, a pyramidal cell of the hippocampus. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-22T09:33:31Z biological_process owl:Class GO:0102975 biolink:NamedThing versiconal hemiacetal acetate reductase activity Catalysis of the reaction: versiconol acetate + NADP <=> versiconal hemiacetal acetate + NADPH. tmpzr1t_l9r_go_relaxed.owl RHEA:35695|EC:1.1.1.353|MetaCyc:RXN-9490 molecular_function owl:Class GO:0018609 biolink:NamedThing chlorobenzene dioxygenase activity Catalysis of the reaction: 2,3-unsubstituted benzenoid + O2 + NAD(P)H + H+ = 2,3-cis-dihydroxydihydrobenzenoid + NAD(P)+. Substrates include 1,4-dichlorobenzene (forms 3,6-dichloro-cis-1,2-dihydroxycyclohexa-3,5-diene), 1,2,3,4-tetrachlorobenzene (forms cis-chlorobenzene dihydrodiol) and 1,2,4-trichlorobenzene (forms 3,4,6-trichloro-cis-1,2-dihydroxycyclohexa-3,5-diene). tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_enzymeID:e0062 molecular_function owl:Class GO:0046987 biolink:NamedThing N-acetyllactosamine beta-1,3-glucuronosyltransferase activity Catalysis of the transfer, in a beta 1,3 linkage, of D-glucuronic acid (GlcUA) from UDP-D-glucuronic acid to N-acetyllactosamine (galactosyl beta-1,4-N-acetylglucosamine). tmpzr1t_l9r_go_relaxed.owl galactosyl beta-1,4 N-acetylglucosamine beta-1,3 glucuronosyltransferase activity molecular_function owl:Class GO:0035741 biolink:NamedThing activated CD4-positive, alpha-beta T cell proliferation The expansion of an activated CD4-positive, alpha-beta T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-17T02:18:39Z biological_process owl:Class GO:0018072 biolink:NamedThing peptidyl-L-glutamyl 5-glycerylphosphorylethanolamine biosynthetic process from peptidyl-glutamic acid The modification of peptidyl-glutamic acid residues by the covalent attachment of ethanolamine, itself further modified by the addition of a phosphoglycerol unit. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-glutamyl 5-glycerylphosphorylethanolamine formation from peptidyl-glutamic acid|peptidyl-L-glutamyl 5-glycerylphosphorylethanolamine synthesis from peptidyl-glutamic acid|peptidyl-L-glutamyl 5-glycerylphosphorylethanolamine anabolism from peptidyl-glutamic acid RESID:AA0170 biological_process owl:Class GO:0015539 biolink:NamedThing hexuronate:cation symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexuronate(out) + cation(out) = hexuronate(in) + cation(in). The hexuronate may be glucuronate or galacturonate. tmpzr1t_l9r_go_relaxed.owl hexuronate (glucuronate/galacturonate) porter activity|hexuronate porter activity molecular_function owl:Class GO:1905091 biolink:NamedThing positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization Any process that activates or increases the frequency, rate or extent of parkin-mediated mitophagy in response to mitochondrial depolarization. tmpzr1t_l9r_go_relaxed.owl up-regulation of parkin-mediated mitophagy in response to mitochondrial depolarization|up regulation of parkin-mediated mitophagy in response to mitochondrial depolarization|positive regulation of Park2-mediated stimulation of mitophagy in response to mitochondrial depolarization|upregulation of parkin-mediated mitophagy in response to mitochondrial depolarization|positive regulation of PRKN-mediated stimulation of mitophagy in response to mitochondrial depolarization|activation of parkin-mediated mitophagy in response to mitochondrial depolarization pad 2016-03-30T15:34:47Z biological_process owl:Class GO:0036024 biolink:NamedThing protein C inhibitor-TMPRSS7 complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and transmembrane protease serine 7 (TMPRSS7); formation of the complex inhibits the serine protease activity of transmembrane protease serine 7. tmpzr1t_l9r_go_relaxed.owl serpin A5-TMPRSS7 complex|SERPINA5-TMPRSS7 complex|plasma serine protease inhibitor-TMPRSS7 complex|protein C inhibitor-matriptase-3 complex|PCI-TMPRSS7 complex|protein C inhibitor-transmembrane protease serine 7 complex bf 2011-10-19T01:25:06Z cellular_component owl:Class GO:0036375 biolink:NamedThing Kibra-Ex-Mer complex An apical protein complex that contains the proteins Kibra, Expanded and Merlin (Mer), or orthologs thereof. In humans, the complex contains KIBRA, FDM6 and NF2. tmpzr1t_l9r_go_relaxed.owl Kbr, Ex and Mer complex|KEM complex bf 2013-05-07T10:05:15Z cellular_component owl:Class GO:1903983 biolink:NamedThing positive regulation of microvillus length A process that increases the length of a microvillus. tmpzr1t_l9r_go_relaxed.owl up-regulation of regulation of microvillus length|upregulation of regulation of microvillus length|activation of regulation of microvillus length|up regulation of regulation of microvillus length als 2015-03-03T13:23:58Z biological_process owl:Class GO:0047233 biolink:NamedThing N-acetylneuraminylgalactosylglucosylceramide beta-1,4-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: N-acetylneuraminyl-2,3-alpha-D-galactosyl-1,4-beta-D-glucosylceramide + UDP-N-acetylgalactosamine = N-acetyl-beta-D-galactosaminyl-1,4-(N-acetyl-alpha-neuraminyl-2,3)-beta-D-galactosyl-1,4-beta-D-glucosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylgalactosamine-acetylneuraminyl(alpha2->3)galactosyl(beta1->4)glucosyl beta1->4-acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:N-acetylneuraminyl-2,3-alpha-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,4-N-acetylgalactosaminyltransferase activity EC:2.4.1.165|RHEA:13569|MetaCyc:2.4.1.165-RXN molecular_function owl:Class GO:0015395 biolink:NamedThing nucleoside transmembrane transporter activity, down a concentration gradient Enables the transfer of a nucleoside, from one side of a membrane to the other, down the concentration gradient. tmpzr1t_l9r_go_relaxed.owl equilibrative nucleoside transporter activity|equilibrative nucleoside transmembrane transporter, nitrobenzyl-thioinosine-insensitive activity|equilibrative nucleoside transmembrane transporter, nitrobenzyl-thioinosine-sensitive activity GO:0015397|GO:0015396 molecular_function owl:Class GO:0019465 biolink:NamedThing aspartate transamidation The exchange of the amino group of aspartate, the anion derived from aspartic acid, for another amino group. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ASPARTATESYN-PWY|MetaCyc:ASPARTATE-DEG1-PWY biological_process owl:Class GO:0004769 biolink:NamedThing steroid delta-isomerase activity Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid. tmpzr1t_l9r_go_relaxed.owl delta5-ketosteroid isomerase activity|hydroxysteroid isomerase activity|delta5-3-ketosteroid isomerase activity|delta(5)-3-keto steroid isomerase activity|3-oxosteroid isomerase activity|steroid D-isomerase activity|delta(5)-3-ketosteroid isomerase activity|delta5-steroid isomerase activity|delta(5)-3-oxosteroid isomerase activity|delta5-3-keto steroid isomerase activity|delta5-3-oxosteroid isomerase activity|3-oxosteroid delta5-delta4-isomerase activity|delta5(or delta4)-3-keto steroid isomerase activity|delta(5)-steroid isomerase activity|steroid isomerase activity Reactome:R-HSA-195690|Reactome:R-HSA-193073|Reactome:R-HSA-193052|Reactome:R-HSA-193961|MetaCyc:STEROID-DELTA-ISOMERASE-RXN|RHEA:14709|Reactome:R-HSA-6807052|EC:5.3.3.1 molecular_function owl:Class GO:0047466 biolink:NamedThing 2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase activity Catalysis of the reaction: cis-2-chloro-4-carboxymethylenebut-2-en-1,4-olide = trans-2-chloro-4-carboxymethylenebut-2-en-1,4-olide. tmpzr1t_l9r_go_relaxed.owl 2-chloro-4-carboxymethylenebut-2-en-1,4-olide cis-trans-isomerase activity|2-chlorocarboxymethylenebutenolide isomerase activity|chlorodienelactone isomerase activity KEGG_REACTION:R04576|EC:5.2.1.10|MetaCyc:5.2.1.10-RXN|UM-BBD_reactionID:r0278|RHEA:10924 GO:0018840 molecular_function owl:Class GO:0008199 biolink:NamedThing ferric iron binding Binding to a ferric iron ion, Fe(III). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009349 biolink:NamedThing riboflavin synthase complex An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043585 biolink:NamedThing nose morphogenesis The process in which the anatomical structures of the nose are generated and organized. The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity). tmpzr1t_l9r_go_relaxed.owl nasus morphogenesis biological_process owl:Class GO:0019343 biolink:NamedThing cysteine biosynthetic process via cystathionine The chemical reactions and pathways resulting in the formation of cysteine, via the intermediate cystathionine. tmpzr1t_l9r_go_relaxed.owl cysteine synthesis via cystathionine|cysteine anabolism via cystathionine|cysteine formation via cystathionine biological_process owl:Class GO:0044844 biolink:NamedThing meiotic interphase II The cell cycle phase which begins at the end of meiosis I cytokinesis and ends when meiosis II prophase begins. During meiotic interphase II no DNA replication takes place, but the centrioles duplicate and spindle fibres emerge. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). jl 2014-03-26T16:52:27Z biological_process owl:Class GO:0009784 biolink:NamedThing transmembrane receptor histidine kinase activity Combining with a signal and transmitting the signal from one side of a membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-histidine = ADP + a protein-L-histidine phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061431 biolink:NamedThing cellular response to methionine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methionine stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-02-07T10:27:01Z biological_process owl:Class GO:0003265 biolink:NamedThing regulation of primary heart field cardioblast proliferation Any process that modulates the frequency, rate or extent of cardioblast proliferation in the primary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. In mammals the primary heart field gives rise to the left ventricle. tmpzr1t_l9r_go_relaxed.owl regulation of first heart field cardioblast proliferation|regulation of FHF cardioblast proliferation|regulation of first heart field cardiac proliferation dph 2009-10-15T02:25:26Z biological_process owl:Class GO:0030841 biolink:NamedThing positive regulation of intermediate filament polymerization Any process that activates or increases the frequency, rate or extent of intermediate filament polymerization. tmpzr1t_l9r_go_relaxed.owl stimulation of intermediate filament polymerization|activation of intermediate filament polymerization|positive regulation of intermediate filament polymerization and/or depolymerization|upregulation of intermediate filament polymerization|up-regulation of intermediate filament polymerization|up regulation of intermediate filament polymerization Note that this term was split from 'positive regulation of intermediate filament polymerization and/or depolymerization ; GO:0045826' (sibling term 'positive regulation of intermediate filament depolymerization ; GO:0030844'). biological_process owl:Class GO:1990538 biolink:NamedThing xylan O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + a xylan= CoA + an acetylated xylan. tmpzr1t_l9r_go_relaxed.owl tb 2014-11-18T20:02:51Z molecular_function owl:Class GO:0022625 biolink:NamedThing cytosolic large ribosomal subunit The large subunit of a ribosome located in the cytosol. tmpzr1t_l9r_go_relaxed.owl prokaryotic large ribosomal subunit|eukaryotic ribosomal LSU|50S ribosomal subunit|60S ribosomal subunit GO:0009282|GO:0005842|GO:0030498|GO:0030872 cellular_component owl:Class GO:1901924 biolink:NamedThing positive regulation of sclerotium development Any process that activates or increases the frequency, rate or extent of sclerotium development. tmpzr1t_l9r_go_relaxed.owl up-regulation of sclerotium development|upregulation of sclerotium development|up regulation of sclerotium development|activation of sclerotium development di 2013-02-15T20:00:28Z biological_process owl:Class GO:1903165 biolink:NamedThing response to polycyclic arene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-07-09T18:32:59Z biological_process owl:Class GO:0015414 biolink:NamedThing ABC-type nitrate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nitrate(out) = ADP + phosphate + nitrate(in). tmpzr1t_l9r_go_relaxed.owl nitrate transporting ATPase activity|nitrate transmembrane-transporting ATPase activity|nitrate-transporting ATPase activity|ATPase-coupled nitrate transmembrane transporter activity|nitrate ABC transporter EC:7.3.2.4|MetaCyc:3.6.3.26-RXN|RHEA:13181 molecular_function owl:Class GO:0061826 biolink:NamedThing podosome ring The ring structure surrounding the podosome core, containing proteins such as vinculin and talin. tmpzr1t_l9r_go_relaxed.owl dph 2017-01-14T14:44:53Z cellular_component owl:Class GO:0005919 biolink:NamedThing pleated septate junction A septate junction in which regular arrays of electron-dense septae span the intermembrane space. tmpzr1t_l9r_go_relaxed.owl pleated desmosome cellular_component owl:Class GO:0070858 biolink:NamedThing negative regulation of bile acid biosynthetic process Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of bile acids. tmpzr1t_l9r_go_relaxed.owl downregulation of bile acid biosynthetic process|down-regulation of bile acid biosynthetic process|down regulation of bile acid biosynthetic process|negative regulation of bile acid biosynthesis|negative regulation of bile acid synthesis|negative regulation of bile acid formation|inhibition of bile acid biosynthetic process|negative regulation of bile acid anabolism mah 2009-08-14T03:16:40Z biological_process owl:Class GO:0018816 biolink:NamedThing 2-hydroxyisobutyrate dehydratase activity Catalysis of the reaction: 2-hydroxyisobutyrate = H2O + methacrylate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0618 molecular_function owl:Class GO:0051028 biolink:NamedThing mRNA transport The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071194 biolink:NamedThing Kv4.2-KChIP3 channel complex A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP3 associated with the channel via interaction with the Kv alpha subunit 4.2. tmpzr1t_l9r_go_relaxed.owl CORUM:608 mah 2009-11-23T04:58:41Z cellular_component owl:Class GO:0036136 biolink:NamedThing kynurenine-oxaloacetate transaminase activity Catalysis of the reaction: L-kynurenine + 2-oxoglutarate = 4-(2-aminophenyl)-2,4-dioxobutanoate + L-aspartate. tmpzr1t_l9r_go_relaxed.owl L-kynurenine-oxaloacetate transaminase activity bf 2012-03-06T02:14:11Z molecular_function owl:Class GO:0008682 biolink:NamedThing 2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase activity Catalysis of the reaction: 2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone + O2 = 2-octoprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone. tmpzr1t_l9r_go_relaxed.owl demethoxyubiquinone monooxygenase|demethoxy-ubiquinone hydroxylase RHEA:50908|MetaCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN|EC:1.14.99.60 molecular_function owl:Class GO:0014023 biolink:NamedThing neural rod formation The formation of a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015714 biolink:NamedThing phosphoenolpyruvate transport The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047410 biolink:NamedThing N-formylmethionylaminoacyl-tRNA deformylase activity Catalysis of the reaction: H2O + charged-fMet-tRNAs = L-methionylaminoacyl-tRNA + formate. tmpzr1t_l9r_go_relaxed.owl N-formyl-L-methionylaminoacyl-tRNA amidohydrolase activity MetaCyc:3.5.1.27-RXN molecular_function owl:Class GO:0019874 biolink:NamedThing 6-aminohexanoate-cyclic-dimer hydrolase activity Catalysis of the reaction: 1,8-diazacyclotetradecane-2,9-dione + H(2)O = N-(6-aminohexanoyl)-6-aminohexanoate. tmpzr1t_l9r_go_relaxed.owl 1,8-diazacyclotetradecane-2,9-dione lactamhydrolase activity MetaCyc:3.5.2.12-RXN|RHEA:16225|EC:3.5.2.12|KEGG_REACTION:R03448|UM-BBD_reactionID:r1097 molecular_function owl:Class GO:0072492 biolink:NamedThing host cell mitochondrial intermembrane space The region between the inner and outer lipid bilayers of the host cell mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-15T11:44:02Z cellular_component owl:Class GO:0031035 biolink:NamedThing myosin filament disassembly The disassembly of a filament composed of myosin molecules. tmpzr1t_l9r_go_relaxed.owl myosin depolymerization biological_process owl:Class GO:0003121 biolink:NamedThing epinephrine-mediated vasodilation A vasodilation process resulting from secretion of epinephrine into the bloodstream or released by nerve endings. tmpzr1t_l9r_go_relaxed.owl regulation of vasodilation by epinephrine|regulation of vasodilation by neuronal epinephrine|regulation of vasodilation by circulating adrenaline|regulation of vasodilation by neuronal adrenaline|regulation of vasodilation by adrenaline|regulation of vasodilation by circulating epinephrine GO:0003124|GO:0003123 biological_process owl:Class GO:1904976 biolink:NamedThing cellular response to bleomycin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bleomycin stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2016-02-18T15:21:31Z biological_process owl:Class GO:0102572 biolink:NamedThing N-glutamylanilide hydrolase activity Catalysis of the reaction: N5-phenyl-L-glutamine + H2O = L-glutamate + aniline + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15251|RHEA:50684 molecular_function owl:Class GO:1901986 biolink:NamedThing response to ketamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ketamine stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2013-03-15T19:16:35Z biological_process owl:Class GO:0043631 biolink:NamedThing RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0120159 biolink:NamedThing rRNA pseudouridine synthase activity Catalysis of the reaction: an rRNA uridine = an rRNA pseudouridine. Conversion of uridine in an rRNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. tmpzr1t_l9r_go_relaxed.owl 23S rRNA pseudouridine(2604) synthase|21S rRNA pseudouridine(2819) synthase|16S rRNA pseudouridine(516) synthase|23S rRNA pseudouridine(1911/1915/1917) synthase|23S rRNA pseudouridine(2457) synthase|23S rRNA pseudouridine(955/2504/2580) synthase|23S rRNA pseudouridine(2605) synthase|23S rRNA pseudouridine(746) synthase EC:5.4.99.24|EC:5.4.99.22|EC:5.4.99.29|EC:5.4.99.19|EC:5.4.99.43|EC:5.4.99.21|EC:5.4.99.20|EC:5.4.99.23 krc 2018-05-11T21:24:19Z molecular_function owl:Class GO:0045281 biolink:NamedThing succinate dehydrogenase complex A multimeric complex which consists of flavoprotein (subunit A ; InterPro:IPR003952), iron-sulfur protein (subunit B) and membrane-bound cytochrome b560 (subunit C; InterPro:IPR000701). In some Archaea, the membrane-bound subunits (C or C and D) do not necessarily contain heme. Membrane-bound subunits can bind or react with quinones. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050031 biolink:NamedThing L-pipecolate oxidase activity Catalysis of the reaction: L-pipecolate + O(2) = 2,3,4,5-tetrahydropyridine-2-carboxylate + H(2)O(2) + H(+). Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl L-pipecolic acid oxidase activity|L-pipecolate:oxygen 1,6-oxidoreductase activity MetaCyc:L-PIPECOLATE-OXIDASE-RXN|Reactome:R-HSA-6783880|RHEA:11992|KEGG_REACTION:R02204|EC:1.5.3.7 molecular_function owl:Class GO:0052893 biolink:NamedThing N1-acetylspermine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity Catalysis of the reaction: N1-acetylspermine + oxygen + H2O = N-(3-acetamidopropyl)-4-aminobutanal + propane-1,3-diamine + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl polyamine oxidase (propane-1,3-diamine-forming) activity EC:1.5.3.14|MetaCyc:RXN-10465|RHEA:25996 molecular_function owl:Class GO:0051221 biolink:NamedThing tungsten incorporation into metallo-sulfur cluster The incorporation of tungsten into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl tungsten incorporation into metallo-sulphur cluster biological_process owl:Class GO:0070021 biolink:NamedThing transforming growth factor beta ligand-receptor complex A protein complex that is formed by the association of a TGF-beta dimeric ligand with 2 molecules of each receptor molecule, TGF-beta type I receptor and TGF-beta type II receptor. The receptor molecules may form homo- or heterodimers but only once bound by the ligand. tmpzr1t_l9r_go_relaxed.owl TGFbeta ligand-receptor complex|TGF-beta1-beta2 ligand-receptor complex|TGFbeta1 ligand-receptor complex|transforming growth factor beta1-type II receptor-type I receptor complex|TGFb ligand-receptor complex|TGF-beta 1:type II receptor:type I receptor complex|TGF-beta2 ligand-receptor complex|TGFbeta1-beta2 ligand-receptor complex|TGF-beta ligand-receptor complex|TGF-beta1-type II receptor-type I receptor complex|TGF-beta receptor II-TGF-beta receptor I-TGF-beta1 complex|TGF-beta1 ligand-receptor complex|TGFbeta2 ligand-receptor complex cellular_component owl:Class GO:0070324 biolink:NamedThing thyroid hormone binding Binding to thyroxine (T4) or triiodothyronine (T3), tyrosine-based hormones produced by the thyroid gland. tmpzr1t_l9r_go_relaxed.owl triiodothyronine binding|thyroxine binding molecular_function owl:Class GO:0010077 biolink:NamedThing maintenance of inflorescence meristem identity The process in which an organism retains a population of inflorescence meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021762 biolink:NamedThing substantia nigra development The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis). tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006063 biolink:NamedThing uronic acid metabolic process The chemical reactions and pathways involving uronic acid, any monocarboxylic acid formally derived by oxidizing to a carboxyl group the terminal hydroxymethylene group of either an aldose with four or more carbon atoms in the molecule, or of any glycoside derived from such an aldose. tmpzr1t_l9r_go_relaxed.owl uronic acid metabolism biological_process owl:Class GO:0033711 biolink:NamedThing 4-phosphoerythronate dehydrogenase activity Catalysis of the reaction: 4-phospho-D-erythronate + NAD(+) = (R)-3-hydroxy-2-oxo-4-phosphonooxybutanoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl erythronate-4-phosphate dehydrogenase activity|PdxB|4PE dehydrogenase activity|PdxB 4PE dehydrogenase activity|4-phospho-D-erythronate:NAD+ 2-oxidoreductase activity|4-O-phosphoerythronate dehydrogenase activity KEGG_REACTION:R04210|MetaCyc:ERYTHRON4PDEHYDROG-RXN|RHEA:18829|EC:1.1.1.290 molecular_function owl:Class GO:0140497 biolink:NamedThing mannan polymerase II complex A complex with alpha-(1->6)-mannosyltransferase activity, located in the cis Golgi membrane; adds mannan to N-linked glycans on proteins as part of the elongation of alpha 1,6-linked Man backbone. In S. cerevisiae, contains Mnn9p, Anp1p, Mnn10p, Mnn11p, and Hoc1p. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19817 pg 2020-07-22T14:33:57Z cellular_component owl:Class GO:0001608 biolink:NamedThing G protein-coupled nucleotide receptor activity Combining with a nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G protein coupled nucleotide receptor activity|nucleotide receptor activity, G protein coupled|G-protein coupled nucleotide receptor activity|nucleotide receptor activity, G-protein coupled molecular_function owl:Class GO:0052629 biolink:NamedThing phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + H2O = a 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10958|Reactome:R-HSA-6809944|Reactome:R-HSA-6809778|Reactome:R-HSA-1676065|Reactome:R-HSA-6809320|Reactome:R-HSA-1676105|RHEA:39019|EC:3.1.3.95|Reactome:R-HSA-1676203 molecular_function owl:Class GO:0019115 biolink:NamedThing benzaldehyde dehydrogenase [NAD(P)+] activity Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.- molecular_function owl:Class GO:0005731 biolink:NamedThing nucleolus organizer region A region of a chromosome where nucleoli form during interphase, and where genes encoding the largest rRNA precursor transcript are tandemly arrayed. tmpzr1t_l9r_go_relaxed.owl NOR|nucleolus organiser region|nucleolus organizer complex Wikipedia:Nucleolus_organizer_region cellular_component owl:Class GO:0102073 biolink:NamedThing OPC8-trans-2-enoyl-CoA hydratase activity Catalysis of the reaction: OPC8-3-hydroxyacyl-CoA <=> OPC8-trans-2-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10697 molecular_function owl:Class GO:0022818 biolink:NamedThing sodium ion uniporter activity Catalysis of the active transport of a sodium ion across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010263 biolink:NamedThing tricyclic triterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings. tmpzr1t_l9r_go_relaxed.owl tricyclic triterpenoid synthesis|tricyclic triterpenoid anabolism|tricyclic triterpenoid formation|tricyclic triterpenoid biosynthesis biological_process owl:Class GO:0097513 biolink:NamedThing myosin II filament A bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T13:06:20Z cellular_component owl:Class GO:0080027 biolink:NamedThing response to herbivore Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904308 biolink:NamedThing cellular response to desipramine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desipramine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T17:00:37Z biological_process owl:Class GO:0021958 biolink:NamedThing gracilis tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the dorsal root ganglion towards target cells in the medulla. This axonal process is a member of those that make up the gracilis tract, a group of axons that are from neurons involved in proprioception from the lower trunk and lower limb. tmpzr1t_l9r_go_relaxed.owl tract of Goll morphogenesis biological_process owl:Class GO:0043049 biolink:NamedThing otic placode formation The initial developmental process that will lead to the formation of the vertebrate inner ear. The otic placode forms as a thickening of the head ectoderm adjacent to the developing hindbrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030946 biolink:NamedThing protein tyrosine phosphatase activity, metal-dependent Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. This reaction requires metal ions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060344 biolink:NamedThing liver trabecula formation The process of creating a trabecula in the liver. A trabecula is a tissue element in the form of a small beam, strut or rod. tmpzr1t_l9r_go_relaxed.owl liver trabeculation|liver trabecula biogenesis biological_process owl:Class GO:0033810 biolink:NamedThing anthocyanin 5-O-glucoside 6'''-O-malonyltransferase activity Catalysis of the reaction: malonyl-CoA + pelargonidin 3-O-(6-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside = CoA + 4'''-demalonylsalvianin. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:pelargonidin-3-O-(6-caffeoyl-beta-D-glucoside)-5-O-beta-D-glucoside 6'''-O-malonyltransferase activity|Ss5MaT1 RHEA:21988|EC:2.3.1.172|MetaCyc:2.3.1.172-RXN molecular_function owl:Class GO:0018535 biolink:NamedThing nicotine dehydrogenase activity Catalysis of the reaction: nicotine + acceptor + H2O = (S)-6-hydroxynicotine + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl nicotine:acceptor 6-oxidoreductase (hydroxylating)|D-nicotine oxidase activity|nicotine oxidase activity|nicotine:(acceptor) 6-oxidoreductase (hydroxylating) MetaCyc:NICOTINE-DEHYDROGENASE-RXN|UM-BBD_enzymeID:e0337|EC:1.5.99.4|RHEA:14769 molecular_function owl:Class GO:0030619 biolink:NamedThing U1 snRNA binding Binding to a U1 small nuclear RNA (U1 snRNA). tmpzr1t_l9r_go_relaxed.owl Note that this term may be useful for annotating other small nuclear RNAs (snRNAs). molecular_function owl:Class GO:0050209 biolink:NamedThing polyvinyl-alcohol oxidase activity Catalysis of the reaction: polyvinyl alcohol + O2 = oxidized polyvinyl alcohol + H2O2. tmpzr1t_l9r_go_relaxed.owl polyvinyl-alcohol:oxygen oxidoreductase activity|dehydrogenase, polyvinyl alcohol|PVA oxidase activity EC:1.1.3.30|MetaCyc:POLYVINYL-ALCOHOL-OXIDASE-RXN|RHEA:21688 molecular_function owl:Class GO:0120160 biolink:NamedThing intraciliary transport particle A binding Binding to an intraciliary transport particle A (IFT A) complex. tmpzr1t_l9r_go_relaxed.owl intraflagellar transport particle A binding|intraflagellar transport complex A binding|IFT A complex binding|intraciliary transport complex A binding krc 2018-05-11T22:28:11Z molecular_function owl:Class GO:0061635 biolink:NamedThing regulation of protein complex stability Any process that affects the structure and integrity of a protein complex by altering the likelihood of its assembly or disassembly. tmpzr1t_l9r_go_relaxed.owl dph 2014-08-13T14:40:21Z biological_process owl:Class GO:0004049 biolink:NamedThing anthranilate synthase activity Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl anthranilate synthetase activity|chorismate pyruvate-lyase (amino-accepting) activity EC:4.1.3.27|RHEA:21732|MetaCyc:ANTHRANSYN-RXN molecular_function owl:Class GO:0080018 biolink:NamedThing anthocyanin 5-O-glucosyltransferase activity Catalysis of the reaction: an anthocyanin + UDP-D-glucose = an anthocyanin-5-O-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015264 biolink:NamedThing methylammonium channel activity Enables the facilitated diffusion of methylammonium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. Methylammonium is CH3NH2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090449 biolink:NamedThing phloem glucosinolate loading The process of loading glucosinolates into the sieve tube or companion cell of the phloem for long distance transport from source to sink. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-07T16:21:22Z biological_process owl:Class GO:0070400 biolink:NamedThing teichoic acid D-alanylation The formation of a D-alanyl ester of teichoic acid. Alanylation of teichoic acids modulates the properties of the bacterial cell wall and modulates the inflammatory properties of the teichoic acid. tmpzr1t_l9r_go_relaxed.owl teichoic acid alanylation biological_process owl:Class GO:0034732 biolink:NamedThing transcription factor TFIIIB-alpha complex A transcription factor TFIIIB-beta complex that contains the TATA-binding protein (TBP), B'' and a specialized homolog of the conserved subunit BRF referred to as BRFU or TFIIIB50, which found in human but not conserved in yeast; the complex is involved in the regulation of transcription from type 3 (upstream) RNA polymerase III promoters. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043125 biolink:NamedThing ErbB-3 class receptor binding Binding to the protein-tyrosine kinase receptor ErbB-3/HER3. tmpzr1t_l9r_go_relaxed.owl Neu/ErbB-2 receptor activity|HER3 receptor binding molecular_function owl:Class GO:0034674 biolink:NamedThing integrin alpha5-beta1 complex An integrin complex that comprises one alpha5 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha5-beta1 integrin complex|ITGA5-ITGB1 complex|VLA-5 complex cellular_component owl:Class GO:0050188 biolink:NamedThing phosphoenolpyruvate mutase activity Catalysis of the reaction: phosphoenolpyruvate = 3-phosphonopyruvate. tmpzr1t_l9r_go_relaxed.owl PEPPM|PEP phosphomutase activity|phosphoenolpyruvate-phosphonopyruvate phosphomutase activity|phosphoenolpyruvate 2,3-phosphonomutase activity|PEP mutase activity|phosphoenolpyruvate phosphomutase activity KEGG_REACTION:R00661|RHEA:17013|MetaCyc:PHOSPHOENOLPYRUVATE-MUTASE-RXN|EC:5.4.2.9 molecular_function owl:Class GO:0008785 biolink:NamedThing alkyl hydroperoxide reductase activity Catalysis of the reaction: octane hydroperoxide + NADH + H+ = H2O + NAD+ + 1-octanol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0684|Reactome:R-HSA-1222526 molecular_function owl:Class GO:0060928 biolink:NamedThing atrioventricular node cell development The process whose specific outcome is the progression of an atrioventricular (AV) node cell over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl AV node cell development dph 2009-09-29T11:59:26Z biological_process owl:Class GO:0061685 biolink:NamedThing diphthine methylesterase activity Catalysis of the reaction: diphthine methyl ester + H2O <=> diphthine + H+ + methanol. tmpzr1t_l9r_go_relaxed.owl RHEA:42656|EC:3.1.1.97 dph 2015-03-04T16:00:21Z molecular_function owl:Class GO:0047548 biolink:NamedThing 2-methyleneglutarate mutase activity Catalysis of the reaction: 2-methyleneglutarate = 2-methylene-3-methylsuccinate. tmpzr1t_l9r_go_relaxed.owl 2-methyleneglutarate carboxy-methylenemethylmutase activity|alpha-methyleneglutarate mutase activity MetaCyc:2-METHYLENEGLUTARATE-MUTASE-RXN|KEGG_REACTION:R03908|EC:5.4.99.4|RHEA:13793 molecular_function owl:Class GO:0004484 biolink:NamedThing mRNA guanylyltransferase activity Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue. tmpzr1t_l9r_go_relaxed.owl GTP--RNA guanylyltransferase activity|mRNA capping enzyme activity|GTP:mRNA guanylyltransferase activity|messenger RNA guanylyltransferase activity|protein lambda2 MetaCyc:MRNA-GUANYLYLTRANSFERASE-RXN|RHEA:54592|EC:2.7.7.50|Reactome:R-HSA-77081|Reactome:R-HSA-77083 molecular_function owl:Class GO:0031487 biolink:NamedThing myosin XVII complex A myosin complex containing one or more class XVII myosin heavy chains and associated light chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046210 biolink:NamedThing nitric oxide catabolic process The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. tmpzr1t_l9r_go_relaxed.owl nitric oxide catabolism|nitric oxide breakdown|nitric oxide degradation biological_process owl:Class GO:0038144 biolink:NamedThing ERBB4:ERBB2 complex A heterodimeric complex between the tyrosine kinase receptor ERBB2 and a ligand-activated receptor ERBB4. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB4. tmpzr1t_l9r_go_relaxed.owl ERBB4:ERBB2 heterodimer|NRGs/EGFLs:ERBB4:ERBB2 bf 2012-03-30T02:24:01Z cellular_component owl:Class GO:0103028 biolink:NamedThing murein hydrolase activity Catalysis of the reaction: a peptidoglycan dimer (generic) = a lipid II + GlcNAc-1,6-anhydro-MurNAc-pentapeptide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5190 molecular_function owl:Class GO:0033841 biolink:NamedThing 6G-fructosyltransferase activity Catalysis of the reaction: [1-beta-D-fructofuranosyl-(2->1)-]m+1 alpha-D-glucopyranoside + [1-beta-D-fructofuranosyl-(2->1)-]n+1 alpha-D-glucopyranoside = [1-beta-D-fructofuranosyl-(2->1)-]m alpha-D-glucopyranoside + [1-beta-D-fructofuranosyl-(2->1)-]n+1 beta-D-fructofuranosyl-(2->6)-alpha-D-glucopyranoside (m > 0; n >= 0). tmpzr1t_l9r_go_relaxed.owl fructan:fructan 6G-fructosyltransferase activity|6G-FFT|6G-fructotransferase activity|6G-FT|1F-oligo[beta-D-fructofuranosyl-(2->1)-]sucrose 6G-beta-D-fructotransferase activity MetaCyc:2.4.1.243-RXN|EC:2.4.1.243 molecular_function owl:Class GO:0061740 biolink:NamedThing protein targeting to lysosome involved in chaperone-mediated autophagy The targeting of a protein to the lysosome process in which an input protein binds to a chaperone and subsequently to a lysosomal receptor. tmpzr1t_l9r_go_relaxed.owl dph 2015-10-21T08:41:29Z biological_process owl:Class GO:0140294 biolink:NamedThing NAD DNA ADP-ribosyltransferase activity Catalysis of the transfer of the ADP-ribose group of NAD+ to a residue in double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T15:45:35Z molecular_function owl:Class GO:0033488 biolink:NamedThing cholesterol biosynthetic process via 24,25-dihydrolanosterol The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate 24,25-dihydrolanosterol. tmpzr1t_l9r_go_relaxed.owl cholesterol synthesis via 24,25-dihydrolanosterol|cholesterol formation via 24,25-dihydrolanosterol|cholesterol biosynthesis via 24,25-dihydrolanosterol|cholesterol anabolism via 24,25-dihydrolanosterol MetaCyc:PWY66-3 biological_process owl:Class GO:0047131 biolink:NamedThing saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity Catalysis of the reaction: L-saccharopine + H(2)O + NAD(+) = L-glutamate + allysine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl dehydrogenase, saccharopine (nicotinamide adenine dinucleotide, glutamate-forming)|6-N-(L-1,3-dicarboxypropyl)-L-lysine:NAD+ oxidoreductase (L-glutamate-forming)|NAD+ oxidoreductase (L-2-aminoadipic-delta-semialdehyde and glutamate forming)|N6-(L-1,3-dicarboxypropyl)-L-lysine:NAD+ oxidoreductase (L-glutamate-forming)|saccharopin dehydrogenase activity|aminoadipic semialdehyde synthase activity EC:1.5.1.9|MetaCyc:1.5.1.9-RXN|RHEA:24520|KEGG_REACTION:R02313|Reactome:R-HSA-70940 molecular_function owl:Class GO:0070772 biolink:NamedThing PAS complex A class III phosphatidylinositol 3-kinase complex that contains a phosphatidylinositol-3-phosphate 5-kinase subunit (Fab1p in yeast; PIKfyve in mammals), a kinase activator, and a phosphatase, and may also contain additional proteins; it is involved in regulating the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate. In mammals the complex is composed of PIKFYVE, FIG4 and VAC14. In yeast it is composed of Atg18p, Fig4p, Fab1p, Vac14p and Vac7p. tmpzr1t_l9r_go_relaxed.owl autophagy-specific phosphatidylinositol 3-kinase complex mah 2009-06-30T11:13:32Z cellular_component owl:Class GO:0102196 biolink:NamedThing cortisol dehydrogenase activity Catalysis of the reaction: cortisol + NADP <=> cortisone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12085|EC:1.1.1.146|RHEA:53484 molecular_function owl:Class GO:1990905 biolink:NamedThing dinoflagellate peduncle A small, flexible, finger-like projection of cytoplasm containing an array of microtubles and located near the flagellar pores in some photosynthetic as well as nonphotosynthetic dinoflagellate species. Its functions are not fully understood, but it has been associated with feeding behavior (phagotrophy). tmpzr1t_l9r_go_relaxed.owl The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. pr 2015-11-22T10:22:46Z cellular_component owl:Class GO:0033977 biolink:NamedThing 2-haloacid dehalogenase (configuration-retaining) activity Catalysis of the reactions: (S)-2-haloacid + H2O = (S)-2-hydroxyacid + halide, and (R)-2-haloacid + H2O = (R)-2-hydroxyacid + halide. tmpzr1t_l9r_go_relaxed.owl 2-haloalkanoic acid dehalogenase activity|DL-DEXr|2-haloalkanoid acid halidohydrolase activity|DL-2-haloacid dehalogenase activity MetaCyc:3.8.1.11-RXN|EC:3.8.1.11|RHEA:12072 molecular_function owl:Class GO:0001862 biolink:NamedThing collectin binding Binding to a collectin, a member of a group of structurally related pattern recognition molecules characterized by having a carbohydrate recognition domain of the C-type lectin family at the C-terminus and a collagenous domain at the N-terminus. tmpzr1t_l9r_go_relaxed.owl Note that collectins include such proteins as mannose-binding lectins (MBL) and surfactant proteins A and D (SP-A and SP-D). molecular_function owl:Class GO:0045520 biolink:NamedThing interleukin-24 receptor binding Binding to an interleukin-24 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-24 receptor ligand|IL-24 molecular_function owl:Class GO:0102255 biolink:NamedThing neo-lambda-carrahexaose hydrolase activity Catalysis of the reaction: neo-lambda-carrahexaose + H2O <=> neo-lambda-carratetraose + neo-lambda-carrabiose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12428|EC:3.2.1.162 molecular_function owl:Class GO:0102932 biolink:NamedThing pterocarpan reductase activity Catalysis of the reaction: H+ + (-)-medicarpin + NADPH = (+)-vestitol + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8936 molecular_function owl:Class GO:0017131 biolink:NamedThing uridine-rich cytoplasmic polyadenylylation element binding Binding to a U-rich sequence in the 3'-end of nuclear-transcribed mRNAs; required for cytoplasmic polyadenylylation. tmpzr1t_l9r_go_relaxed.owl U-rich CPE binding|uridine-rich cytoplasmic polyadenylation element binding molecular_function owl:Class GO:0036217 biolink:NamedThing dGTP diphosphatase activity Catalysis of the reaction: dGTP + H2O = dGMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2'-deoxyguanosine 5'-triphosphate diphosphohydrolase RHEA:28362|KEGG_REACTION:R01855 bf 2012-05-08T01:47:59Z molecular_function owl:Class GO:0006219 biolink:NamedThing deoxyuridine catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyuridine catabolism|deoxyuridine degradation|deoxyuridine breakdown biological_process owl:Class GO:0046096 biolink:NamedThing deoxyuridine metabolic process The chemical reactions and pathways involving deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA. tmpzr1t_l9r_go_relaxed.owl deoxyuridine metabolism biological_process owl:Class GO:1990555 biolink:NamedThing mitochondrial oxaloacetate transmembrane transport The process in which oxaloacetate is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T12:45:37Z biological_process owl:Class GO:0043985 biolink:NamedThing histone H4-R3 methylation The modification of histone H4 by addition of a methyl group to arginine at position 3 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 R3 methylation|histone H4 methylation at R3|histone H4R3me biological_process owl:Class GO:0010448 biolink:NamedThing vegetative meristem growth The increase in size or mass of a vegetative meristem, a population of undifferentiated cells in a plant shoot which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into lateral organ primordia. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090410 biolink:NamedThing malonate catabolic process The chemical reactions and pathways resulting in the breakdown of malonate, the propanedioate ion. tmpzr1t_l9r_go_relaxed.owl tb 2011-06-10T01:53:43Z biological_process owl:Class GO:0071061 biolink:NamedThing alpha6-beta4 integrin-CD151 complex A protein complex that consists of an alpha6-beta4 integrin complex bound to the tetraspanin CD151. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB4-CD151 complex mah 2009-11-03T04:02:37Z cellular_component owl:Class GO:1905679 biolink:NamedThing positive regulation of adaptive immune effector response Any process that activates or increases the frequency, rate or extent of adaptive immune effector response. tmpzr1t_l9r_go_relaxed.owl up regulation of adaptive immune effector response|up-regulation of adaptive immune effector response|upregulation of adaptive immune effector response|activation of adaptive immune effector response tb 2016-11-11T22:25:13Z biological_process owl:Class GO:0033427 biolink:NamedThing CAA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CAA codon. tmpzr1t_l9r_go_relaxed.owl glutamine tRNA Note that in the standard genetic code, CAA codes for glutamine. molecular_function owl:Class GO:0050085 biolink:NamedThing mannitol 2-dehydrogenase (NADP+) activity Catalysis of the reaction: D-mannitol + NADP(+) = D-fructose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl D-mannitol:NADP+ 2-oxidoreductase activity|NADP-dependent mannitol dehydrogenase activity MetaCyc:MANNITOL-2-DEHYDROGENASE-NADP+-RXN|RHEA:16765|KEGG_REACTION:R00870|EC:1.1.1.138 molecular_function owl:Class GO:0070326 biolink:NamedThing very-low-density lipoprotein particle receptor binding Binding to a very-low-density lipoprotein receptor. tmpzr1t_l9r_go_relaxed.owl apolipoprotein E receptor binding|VLDLR binding|VLDL receptor binding|very-low-density lipoprotein receptor binding molecular_function owl:Class GO:1990566 biolink:NamedThing I(KACh) inward rectifier potassium channel complex An inward rectifier potassium channel complex expressed in cardiac muscle, specifically the sinoatrial node and atria, where it controls the heart rate, via regulation by G protein-coupled receptor signalling. In mammals it is composed of GIRK1 (or Kir3.1) and GIRK4 (or Kir3.4) subunits. tmpzr1t_l9r_go_relaxed.owl muscarinic potassium channel complex|Kir3.1-Kir3.4 G protein-coupled atrial inward rectifier potassium channel complex|GIRK1-GIRK4 G protein-coupled atrial inward rectifier potassium channel complex Examples of this are KCNJ3 and KCNJ5 in human (Uniprot symbols P48549 and P48544) in PMID:9765280 inferred from orthology sequence evidence. ame 2014-11-26T15:16:14Z cellular_component owl:Class GO:0004095 biolink:NamedThing carnitine O-palmitoyltransferase activity Catalysis of the reaction: palmitoyl-CoA + L-carnitine = CoA + L-palmitoylcarnitine. tmpzr1t_l9r_go_relaxed.owl CPTi|carnitine palmitoyltransferase II|outer malonyl-CoA inhibitable carnitine palmitoyltransferase activity|acylcarnitine transferase activity|CPT|CPT I (outer membrane carnitine palmitoyl transferase)|carnitine palmitoyltransferase-A|CPT-B|palmitoylcarnitine transferase activity|palmitoyl-CoA:L-carnitine O-palmitoyltransferase activity|carnitine palmitoyltransferase I|L-carnitine palmitoyltransferase activity|carnitine palmitoyltransferase activity|CPT-A|CPTo MetaCyc:CARNITINE-O-PALMITOYLTRANSFERASE-RXN|EC:2.3.1.21|Reactome:R-HSA-200406|RHEA:12661|Reactome:R-HSA-200410 molecular_function owl:Class GO:0035999 biolink:NamedThing tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-2201|UniPathway:UPA00193 bf 2011-09-02T01:35:49Z biological_process owl:Class GO:0052835 biolink:NamedThing inositol-3,4,6-trisphosphate 1-kinase activity Catalysis of the reaction: 1D-myo-inositol 3,4,6-trisphosphate + ATP = 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl inositol-trisphosphate 1-kinase activity|ATP:1D-myo-inositol-3,4,6-trisphosphate 1-phosphotransferase activity|IP3 1-kinase activity|ins(3,4,6)P(3) 1-kinase activity|inositol 3,4,6-trisphosphate 1-kinase activity|Ins(3,4,6)P3 1-kinase activity|1D-myo-inositol-trisphosphate 1-kinase activity EC:2.7.1.-|Reactome:R-HSA-1855169 ai 2011-11-29T01:06:01Z molecular_function owl:Class GO:0035013 biolink:NamedThing myosuppressin receptor activity Combining with the peptide myosuppressin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905527 biolink:NamedThing negative regulation of Golgi lumen acidification Any process that stops, prevents or reduces the frequency, rate or extent of Golgi lumen acidification. tmpzr1t_l9r_go_relaxed.owl down regulation of Golgi lumen acidification|inhibition of Golgi lumen acidification|down-regulation of Golgi lumen acidification|downregulation of Golgi lumen acidification dph 2016-10-05T13:16:33Z biological_process owl:Class GO:0047572 biolink:NamedThing 3-phosphoglycerate phosphatase activity Catalysis of the reaction: 3-phospho-D-glycerate + H(2)O = D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl D-3-phosphoglycerate phosphatase activity|3-PGA phosphatase activity|D-glycerate-3-phosphate phosphohydrolase activity RHEA:12412|MetaCyc:3-PHOSPHOGLYCERATE-PHOSPHATASE-RXN|EC:3.1.3.38|KEGG_REACTION:R01511 molecular_function owl:Class GO:0036389 biolink:NamedThing bacterial pre-replicative complex A protein-DNA complex that forms at the bacterial oriC during the initial step of DNA replication and allows the origin to become competent, or 'licensed', for replication. tmpzr1t_l9r_go_relaxed.owl bacterial pre-RC bf 2013-06-05T16:41:47Z cellular_component owl:Class GO:0102312 biolink:NamedThing 4-coumaroyl 2'-hydroxylase activity Catalysis of the reaction: 4-coumaryl-CoA + 2-oxoglutarate + O2 <=> 2,4-dihydroxycinnamoyl-CoA + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.11.62|RHEA:57868|MetaCyc:RXN-12963 molecular_function owl:Class GO:0018573 biolink:NamedThing 2-aminophenol 1,6-dioxygenase activity Catalysis of the reaction: 2-aminophenol + O2 = 2-aminomuconic semialdehyde. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0305 molecular_function owl:Class GO:0035294 biolink:NamedThing determination of wing disc primordium Allocation of embryonic cells to the wing disc founder populations, groups of cells that are committed to contribute to the formation of a wing imaginal disc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051907 biolink:NamedThing S-(hydroxymethyl)glutathione synthase activity Catalysis of the reaction: S-(hydroxymethyl)glutathione = formaldehyde + glutathione. tmpzr1t_l9r_go_relaxed.owl Gfa|glutathione-dependent formaldehyde-activating enzyme activity|S-(hydroxymethyl)glutathione formaldehyde-lyase (glutathione-forming)|S-(hydroxymethyl)glutathione formaldehyde-lyase activity EC:4.4.1.22|UM-BBD_reactionID:r1145|KEGG_REACTION:R06982|RHEA:22488|MetaCyc:RXN-2961 molecular_function owl:Class GO:0140133 biolink:NamedThing suppression by symbiont of host cytokine production Any process in which a symbiont stops, prevents, or reduces the rate or extent of cytokine production by the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression by symbiont of host cytokine secretion|negative regulation by symbiont of host cytokine production https://github.com/geneontology/go-ontology/issues/14553 pg 2017-11-14T07:07:04Z biological_process owl:Class GO:0098623 biolink:NamedThing selenite reductase activity Catalysis of the reaction: SeO3(2-) + 3NADPH + 5H+ = H2Se + 3NADP+ + 3H2O. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408558 molecular_function owl:Class GO:0047468 biolink:NamedThing phosphoglucomutase (glucose-cofactor) activity Catalysis of the reaction: glucose-1-phosphate = glucose-6-phosphate; using D-glucose as a cofactor. tmpzr1t_l9r_go_relaxed.owl alpha-D-glucose 1,6-phosphomutase (glucose-cofactor)|glucose-1-phosphate phosphotransferase activity EC:5.4.2.5|MetaCyc:5.4.2.5-RXN molecular_function owl:Class GO:0033457 biolink:NamedThing GAU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GAU codon. tmpzr1t_l9r_go_relaxed.owl aspartic acid tRNA|GAT codon-amino acid adaptor activity Note that in the standard genetic code, GAT codes for aspartic acid. molecular_function owl:Class GO:0002204 biolink:NamedThing somatic recombination of immunoglobulin genes involved in immune response The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, also known as immunoglobulin gene segments, within a single locus following the induction of and contributing to an immune response. tmpzr1t_l9r_go_relaxed.owl somatic recombination of antibody genes during immune response|somatic recombination of immunoglobulin genes during immune response biological_process owl:Class GO:0018664 biolink:NamedThing benzoate 4-monooxygenase activity Catalysis of the reaction: benzoate + H(+) + NADPH + O(2) = 4-hydroxybenzoate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl benzoate,NADPH:oxygen oxidoreductase (4-hydroxylating)|benzoate-para-hydroxylase activity|benzoic acid 4-hydroxylase activity|4-hydroxybenzoic hydroxylase activity|benzoate-p-hydroxylase activity|p-hydroxybenzoate hydroxylase activity|benzoate 4-hydroxylase activity|benzoic 4-hydroxylase activity UM-BBD_reactionID:r0623|RHEA:18033|EC:1.14.14.92|KEGG_REACTION:R01295|MetaCyc:BENZOATE-4-MONOOXYGENASE-RXN molecular_function owl:Class GO:0004109 biolink:NamedThing coproporphyrinogen oxidase activity Catalysis of the reaction: coproporphyrinogen III + 2 H(+) + O(2) = 2 CO(2) + 2 H(2)O + protoporphyrinogen IX. tmpzr1t_l9r_go_relaxed.owl coproporphyrinogenase activity|coproporphyrinogen-III oxidase activity|coproporphyrinogen:oxygen oxidoreductase (decarboxylating)|coprogen oxidase activity KEGG_REACTION:R03220|MetaCyc:RXN0-1461|RHEA:18257|EC:1.3.3.3|Reactome:R-HSA-189421 molecular_function owl:Class GO:1904067 biolink:NamedThing ascr#2 binding Binding to ascr#2. tmpzr1t_l9r_go_relaxed.owl kmv 2015-03-20T01:39:04Z molecular_function owl:Class GO:0090304 biolink:NamedThing nucleic acid metabolic process Any cellular metabolic process involving nucleic acids. tmpzr1t_l9r_go_relaxed.owl tb 2010-04-07T10:18:47Z biological_process owl:Class GO:0102142 biolink:NamedThing [dermatan sulfate]-L-iduronyl 2-Osulfotransferase activity Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + [dermatan]-alpha-L-iduronate <=> adenosine 3',5'-bismonophosphate + [dermatan-sulfate]-2-O-sulfo-alpha-L-iduronate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11561 molecular_function owl:Class GO:0034902 biolink:NamedThing endosulfan sulfate hydrolase activity Catalysis of the reaction: endosulfan sulfate + H2O = endosulfan diol + sulfite. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1387 molecular_function owl:Class GO:0000831 biolink:NamedThing inositol hexakisphosphate 6-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018457 biolink:NamedThing perillyl-alcohol dehydrogenase activity Catalysis of the reaction: NAD(+) + perillyl alcohol = H(+) + NADH + perillyl aldehyde. tmpzr1t_l9r_go_relaxed.owl perillyl alcohol dehydrogenase activity|perillyl-alcohol:NAD+ oxidoreductase activity UM-BBD_reactionID:r0729|RHEA:10664|MetaCyc:PERILLYL-ALCOHOL-DEHYDROGENASE-RXN|KEGG_REACTION:R03945|EC:1.1.1.144 molecular_function owl:Class GO:0019771 biolink:NamedThing high-affinity IgG receptor activity Combining with high affinity with an immunoglobulin of an IgG isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl high affinity Fc receptor activity|high affinity IgG receptor activity molecular_function owl:Class GO:0098690 biolink:NamedThing glycinergic synapse A synapse that uses glycine as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dos 2017-03-07T14:50:33Z cellular_component owl:Class GO:0110086 biolink:NamedThing meiotic actomyosin contractile ring A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the meiotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the meiotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In fungal cells, the meiotic contractile ring forms beneath the plasma membrane of the prospore envelope in preparation for completing cytokinesis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-12T17:26:17Z cellular_component owl:Class GO:0034804 biolink:NamedThing benzo(a)pyrene 11,12-epoxidase activity Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-11,12-epoxide. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1119 molecular_function owl:Class GO:0035777 biolink:NamedThing pronephric distal tubule development The process whose specific outcome is the progression of the pronephric distal tubule over time, from its formation to the mature structure. A pronephric nephron tubule is an epithelial tube that is part of the pronephros. tmpzr1t_l9r_go_relaxed.owl bf 2011-04-04T11:06:01Z biological_process owl:Class GO:0034025 biolink:NamedThing D-aspartate ligase activity Catalysis of the reaction: ATP + D-aspartate + [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n = [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-6-N-(beta-D-Asp)-L-Lys-D-Ala-D-Ala)]n + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl aslfm|D-aspartic acid-activating enzyme|D-aspartate:[beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n ligase (ADP-forming) activity|UDP-MurNAc-pentapeptide:D-aspartate ligase activity MetaCyc:6.3.1.12-RXN|RHEA:10752|EC:6.3.1.12 molecular_function owl:Class GO:0010609 biolink:NamedThing mRNA localization resulting in posttranscriptional regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression after the production of a mRNA transcript by its transport into, or maintainance in, a specific location within the cell. tmpzr1t_l9r_go_relaxed.owl posttranscriptional regulation of gene expression by mRNA localisation|posttranscriptional regulation of gene expression by mRNA localization|mRNA localisation resulting in posttranscriptional regulation of gene expression biological_process owl:Class GO:0051976 biolink:NamedThing lysine biosynthetic process via alpha-aminoadipate and N2-acetyl-alpha-aminoadipate The chemical reactions and pathways resulting in the formation of lysine via the intermediates alpha-aminoadipic acid and N2-acetyl-alpha-aminoadipate. This pathway of prokaryotic lysine biosynthesis via alpha-aminoadipate was discovered in the hyper-thermophilic Gram-negative eubacterium Thermus thermophilus. The pathway proceeds as follows: alpha-ketoglutarate is converted to homocitrate, which is metabolized to 3-carboxyhex-2-enedioate and then homoisocitrate. This is then decarboxylated to form alpha-ketoadipate, which is then converted to alpha-aminoadipate. This undergoes acetylation, to form N2-acetyl-alpha-aminoadipate, and is then phosphorylated to give N2-acetyl-alpha-aminoadipyl-delta-phosphate. This is converted to N2-acetyl-alpha-aminoadipate semialdehyde, which is then converted to N2-acetyl-L-lysine. A final deacetylation reaction produces L-lysine. tmpzr1t_l9r_go_relaxed.owl lysine biosynthesis via aminoadipic acid and N2-acetyl-alpha-aminoadipate|lysine biosynthetic process via aminoadipic acid and N2-acetyl-alpha-aminoadipate MetaCyc:PWY-3081 biological_process owl:Class GO:0004018 biolink:NamedThing N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP. tmpzr1t_l9r_go_relaxed.owl adenylosuccinate lyase activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase activity|6-N-(1,2-dicarboxyethyl)AMP AMP-lyase activity|succino AMP-lyase activity|adenylosuccinase activity Reactome:R-HSA-73800|RHEA:16853|EC:4.3.2.2|Reactome:R-HSA-73828|KEGG_REACTION:R01083|MetaCyc:AMPSYN-RXN molecular_function owl:Class GO:0072487 biolink:NamedThing MSL complex A histone acetyltransferase complex that catalyzes the acetylation of a histone H4 lysine residue at position 16. In human, it contains the catalytic subunit MOF, and MSL1, MSL2 and MSL3. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-10T10:15:11Z cellular_component owl:Class GO:0102675 biolink:NamedThing C4-methyltransferase activity Catalysis of the reaction: 24-ethylidenelophenol + a demethylated methyl acceptor <=> avenasterol + a methylated methyl acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4208 molecular_function owl:Class GO:0033191 biolink:NamedThing macrophomate synthase activity Catalysis of the reaction: a 2-pyrone + oxalacetate = macrophomate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016167 biolink:NamedThing glial cell-derived neurotrophic factor receptor activity Combining with glial cell line-derived neurotrophic factor and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl glial cell line-derived neurotrophic factor receptor activity|GDNF receptor activity molecular_function owl:Class GO:0070966 biolink:NamedThing nuclear-transcribed mRNA catabolic process, no-go decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation. tmpzr1t_l9r_go_relaxed.owl nuclear-transcribed mRNA degradation, no-go decay|no-go decay|nuclear-transcribed mRNA breakdown, no-go decay|nuclear-transcribed mRNA catabolism, no-go decay|no-go mRNA decay mah 2009-10-01T02:36:22Z biological_process owl:Class GO:0002222 biolink:NamedThing stimulatory killer cell immunoglobulin-like receptor signaling pathway Any series of molecular signals generated as a consequence of binding to a killer cell immunoglobulin-like receptor capable of cellular activation. tmpzr1t_l9r_go_relaxed.owl stimulatory KIR signaling pathway|stimulatory killer cell immunoglobulin-like receptor signalling pathway biological_process owl:Class GO:0070823 biolink:NamedThing HDA1 complex A tetrameric histone deacetylase complex that contains a Class II deacetylase catalytic subunit. In S. cerevisiae it is composed of two Hda1p subunits along with Hda2p and Hda3p. tmpzr1t_l9r_go_relaxed.owl mah 2009-07-20T04:47:11Z cellular_component owl:Class GO:0047726 biolink:NamedThing iron-cytochrome-c reductase activity Catalysis of the reaction: ferrocytochrome c + Fe3+ = ferricytochrome c + Fe2+. tmpzr1t_l9r_go_relaxed.owl iron-cytochrome c reductase activity|ferrocytochrome-c:Fe3+ oxidoreductase activity MetaCyc:IRON--CYTOCHROME-C-REDUCTASE-RXN|EC:1.9.98.1|RHEA:15617 molecular_function owl:Class GO:0033732 biolink:NamedThing pyrroloquinoline-quinone synthase activity Catalysis of the reaction: 6-(2-amino-2-carboxyethyl)-7,8-dioxo-1,2,3,4,7,8-hexahydroquinoline-2,4-dicarboxylate + 3 O(2) = 2 H(2)O + 2 H(2)O(2) + H(+) + pyrroloquinoline quinone. tmpzr1t_l9r_go_relaxed.owl 6-(2-amino-2-carboxyethyl)-7,8-dioxo-1,2,3,4,5,6,7,8-octahydroquinoline-2,4-dicarboxylate:oxygen oxidoreductase (cyclizing) activity|PqqC KEGG_REACTION:R07353|RHEA:10692|EC:1.3.3.11|MetaCyc:1.3.3.11-RXN molecular_function owl:Class GO:0044288 biolink:NamedThing puncta adhaerentia A small version of the zonula adherens type junction, characterized by a symmetrical adherent point between two cells. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao257629430 jl 2010-02-04T02:19:38Z cellular_component owl:Class GO:0047495 biolink:NamedThing membrane-oligosaccharide glycerophosphotransferase activity Catalysis of the transfer of a glycerophospho group from one membrane-derived oligosaccharide to another. tmpzr1t_l9r_go_relaxed.owl phosphoglycerol cyclase activity|membrane-derived-oligosaccharide-6-(glycerophospho)-D-glucose:membrane-derived-oligosaccharide-D-glucose glycerophosphotransferase activity|periplasmic phosphoglycerotransferase activity MetaCyc:2.7.8.21-RXN|EC:2.7.8.21 molecular_function owl:Class GO:0062236 biolink:NamedThing ionocyte differentiation The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an ionocyte. Ionocytes are specialized epithelial cells that contribute to osmotic homeostasis. tmpzr1t_l9r_go_relaxed.owl dph 2020-04-20T12:30:35Z biological_process owl:Class GO:0050405 biolink:NamedThing [acetyl-CoA carboxylase] kinase activity Catalysis of the reaction: ATP + [acetyl-CoA carboxylase] = ADP + [acetyl-CoA carboxylase] phosphate. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA carboxylase kinase 2 activity|acetyl-CoA carboxylase kinase activity|acetyl-CoA carboxylase kinase-3 (AMP-activated) activity|AMPK|acetyl coenzyme A carboxylase kinase (phosphorylating) activity|I-peptide kinase activity|acetyl-CoA carboxylase kinase (cAMP-independent) activity|acetyl-CoA carboxylase bound kinase activity|ACK2|acetyl-CoA carboxylase kinase (AMP-activated) activity|acetyl-CoA carboxylase kinase-2 activity|STK5|ACK3|ATP:acetyl-CoA carboxylase phosphotransferase activity|acetyl-coenzyme A carboxylase kinase activity RHEA:20333|EC:2.7.11.27|MetaCyc:2.7.11.27-RXN molecular_function owl:Class GO:0002953 biolink:NamedThing 5'-deoxynucleotidase activity Catalysis of the reaction:a 2'-deoxyribonucleoside 5'-monophosphate + H20=a 2'-deoxyribonucleoside + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005502 biolink:NamedThing 11-cis retinal binding Binding to 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A. tmpzr1t_l9r_go_relaxed.owl 11-cis-retinal binding|11-cis retinaldehyde binding|vitamin A binding molecular_function owl:Class GO:0034806 biolink:NamedThing benzo(a)pyrene 11,12-dioxygenase activity Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-cis-11,12-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1124 molecular_function owl:Class GO:0090647 biolink:NamedThing modulation of age-related behavioral decline Any process that modulates the processes that arise as an organism progresses toward the end of its lifespan that results in a decline in behavioral activities such as locomotory behavior, and learning or memory. tmpzr1t_l9r_go_relaxed.owl tb 2015-06-15T12:45:44Z biological_process owl:Class GO:0070519 biolink:NamedThing alpha4-beta1 integrin-CD63 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD63, a member of the tetraspan family. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-CD63 complex cellular_component owl:Class GO:0016015 biolink:NamedThing morphogen activity Acts as a trigger for a pattern specification process when present at a specific concentration within a gradient. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102182 biolink:NamedThing 4alpha-carboxy-stigmasta-7,24(241)-dien-3beta-ol dehydrogenase/C4-decarboxylase activity Catalysis of the reaction: 4alpha-carboxy-stigmasta-7,24(241)-dien-3beta-ol + NAD <=> avenastenone + NADH + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11938 molecular_function owl:Class GO:0102980 biolink:NamedThing 2-butyl-4-hydroxy-5-methyl-3(2H)-furanoneoxidoreductase activity Catalysis of the reaction: 2-butyl-4-hydroxy-5-methyl-3(2H)-furanone + NADP <=> (2E)-2-butylidene-4-hydroxy-5-methyl-3(2H)-furanone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9565 molecular_function owl:Class GO:0033921 biolink:NamedThing capsular-polysaccharide endo-1,3-alpha-galactosidase activity Catalysis of the random hydrolysis of (1->3)-alpha-D-galactosidic linkages in Aerobacter aerogenes capsular polysaccharide. tmpzr1t_l9r_go_relaxed.owl polysaccharide depolymerase activity|aerobacter-capsular-polysaccharide galactohydrolase activity|capsular polysaccharide galactohydrolase activity EC:3.2.1.87|MetaCyc:3.2.1.87-RXN molecular_function owl:Class GO:0061468 biolink:NamedThing karyomere A membrane-bound intermediate cleavage-stage structure of individual or groups of chromosomes that coalesces and fuses with other karyomeres to form a nucleus during interphase. Karyomere formation occurs in blastomeres undergoing rapid cell division. tmpzr1t_l9r_go_relaxed.owl dph 2012-10-22T14:19:29Z cellular_component owl:Class GO:0120307 biolink:NamedThing Hechtian strand An extended membranous thread which firmly connects the plasma membrane to the cell wall during plasmolysis such that the plasma membrane does not separate from the cell wall completely. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21138 Wikipedia:Hechtian_strand krc 2021-03-19T20:31:15Z cellular_component owl:Class GO:0102708 biolink:NamedThing S-adenosyl-L-methionine:N-methyl-beta-alanine N-methyltransferase activity Catalysis of the reaction: N-methyl-beta-alanine + S-adenosyl-L-methionine = H+ + N,N-dimethyl-beta-alanine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6462 molecular_function owl:Class GO:1903514 biolink:NamedThing release of sequestered calcium ion into cytosol by endoplasmic reticulum The directed movement of calcium ion from endoplasmic reticulum to cytosol. tmpzr1t_l9r_go_relaxed.owl calcium ion transport from endoplasmic reticulum to cytosol rl 2014-10-02T11:30:34Z biological_process owl:Class GO:0001635 biolink:NamedThing calcitonin gene-related peptide receptor activity Combining with a calcitonin gene-related polypeptide (CGRP) to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl calcitonin gene-related polypeptide receptor activity|CGRP receptor Wikipedia:CALCRL molecular_function owl:Class GO:0102542 biolink:NamedThing aclacinomycin A methylesterase activity Catalysis of the reaction: aclacinomycin A + H2O <=> 15-demethoxy-aclacinomycin A + methanol + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.95|MetaCyc:RXN-14863 molecular_function owl:Class GO:0052603 biolink:NamedThing 1-chloro-4-nitrosobenzene nitroreductase activity Catalysis of the reaction: 1-chloro-4-nitrosobenzene + NADPH + H+ = 1-chloro-4-hydroxylaminobenzene + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8834|UM-BBD_enzymeID:e0245 molecular_function owl:Class GO:0050331 biolink:NamedThing thiamine-diphosphate kinase activity Catalysis of the reaction: ATP + thiamin diphosphate = ADP + thiamin triphosphate. tmpzr1t_l9r_go_relaxed.owl TDP kinase activity|ATP:thiamin-diphosphate phosphotransferase activity|thiamin pyrophosphate kinase activity|thiamin diphosphate kinase activity|thiamine diphosphate kinase activity|protein bound thiamin diphosphate:ATP phosphoryltransferase activity|thiamin diphosphate phosphotransferase activity|ATP:thiamine-diphosphate phosphotransferase activity|thiamin-diphosphate kinase activity MetaCyc:THIAMIN-DIPHOSPHATE-KINASE-RXN|EC:2.7.4.15|Reactome:R-HSA-997381|RHEA:11240 molecular_function owl:Class GO:0070144 biolink:NamedThing mitochondrial arginyl-tRNA aminoacylation The process of coupling arginine to arginyl-tRNA in a mitochondrion, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0055077 biolink:NamedThing gap junction hemi-channel activity A wide pore channel activity that enables the transport of a solute across a membrane via a gap junction hemi-channel. Two gap junction hemi-channels coupled together form a complete gap junction. tmpzr1t_l9r_go_relaxed.owl connexon channel activity molecular_function owl:Class GO:1904584 biolink:NamedThing cellular response to polyamine macromolecule Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polyamine macromolecule stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to polyamine|cellular response to polyamines sl 2015-08-20T14:35:32Z biological_process owl:Class GO:0140203 biolink:NamedThing spermidine import across plasma membrane The directed movement of spermidine from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-21T19:10:07Z biological_process owl:Class GO:0060987 biolink:NamedThing lipid tube A macromolecular complex that contains a tube of lipid surrounded by a protein coat. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-11T01:54:25Z cellular_component owl:Class GO:0035444 biolink:NamedThing nickel cation transmembrane transport The directed movement of nickel (Ni) cations across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl nickel cation membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-04-13T09:22:51Z biological_process owl:Class GO:0004495 biolink:NamedThing mevaldate reductase activity Catalysis of the reaction: (R)-mevalonate + acceptor = mevaldate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035456 biolink:NamedThing response to interferon-beta Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon. tmpzr1t_l9r_go_relaxed.owl response to fiblaferon|response to beta-1 interferon|response to fibroblast interferon|response to interferon beta bf 2010-04-16T11:06:12Z biological_process owl:Class GO:0070514 biolink:NamedThing SRF-myogenin-E12 complex A transcription factor complex that contains the serum response factor (SRF) and the basic helix-loop-helix proteins myogenin and E12, and is involved in activating transcription of muscle-specific genes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042682 biolink:NamedThing regulation of compound eye cone cell fate specification Any process that mediates the specification of a cell into a compound eye cone cell. tmpzr1t_l9r_go_relaxed.owl GO:0042681 biological_process owl:Class GO:0050609 biolink:NamedThing phosphonate dehydrogenase activity Catalysis of the reaction: H(2)O + NAD(+) + phosphonate = 2 H(+) + NADH + phosphate. tmpzr1t_l9r_go_relaxed.owl NAD-dependent phosphite dehydrogenas activity|phosphonate:NAD+ oxidoreductase activity|NAD:phosphite oxidoreductase activity|phosphite dehydrogenase activity KEGG_REACTION:R05746|EC:1.20.1.1|RHEA:13173|MetaCyc:1.20.1.1-RXN|UM-BBD_reactionID:r1055 molecular_function owl:Class GO:0050499 biolink:NamedThing oxidoreductase activity, acting on phosphorus or arsenic in donors, with NAD(P)+ as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a NAD(P)+ to NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.20.1.- molecular_function owl:Class GO:0071739 biolink:NamedThing IgD immunoglobulin complex, circulating A protein complex composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl IgD antibody Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0033798 biolink:NamedThing thyroxine 5-deiodinase activity Catalysis of the reaction: 3,3',5'-triiodo-L-thyronine + iodide + A + H+ = L-thyroxine + AH2. tmpzr1t_l9r_go_relaxed.owl inner ring-deiodinating pathway|iodothyronine 5-deiodinase activity|acceptor:3,3',5'-triiodo-L-thyronine oxidoreductase (iodinating) activity|diiodothyronine 5'-deiodinase activity|type III iodothyronine deiodinase activity|iodothyronine inner ring monodeiodinase activity MetaCyc:1.97.1.11-RXN|EC:1.21.99.3|RHEA:18897 molecular_function owl:Class GO:0047736 biolink:NamedThing cellobiose epimerase activity Catalysis of the reaction: cellobiose = D-glucosyl-D-mannose. tmpzr1t_l9r_go_relaxed.owl cellobiose 2-epimerase activity EC:5.1.3.11|RHEA:23384|MetaCyc:CELLOBIOSE-EPIMERASE-RXN molecular_function owl:Class GO:1902277 biolink:NamedThing negative regulation of pancreatic amylase secretion Any process that stops, prevents or reduces the frequency, rate or extent of pancreatic amylase secretion. tmpzr1t_l9r_go_relaxed.owl down-regulation of pancreatic amylase secretion|down regulation of pancreatic amylase secretion|inhibition of pancreatic amylase secretion|downregulation of pancreatic amylase secretion bf 2013-07-03T12:15:26Z biological_process owl:Class GO:0050262 biolink:NamedThing ribosylnicotinamide kinase activity Catalysis of the reaction: N-ribosylnicotinamide + ATP = ADP + 2 H(+) + nicotinamide mononucleotide. tmpzr1t_l9r_go_relaxed.owl ATP:N-ribosylnicotinamide 5'-phosphotransferase activity|nicotinamide riboside kinase activity|ribosylnicotinamide kinase (phosphorylating) KEGG_REACTION:R02324|Reactome:R-HSA-8869633|MetaCyc:RIBOSYLNICOTINAMIDE-KINASE-RXN|EC:2.7.1.22|Reactome:R-HSA-8869627|RHEA:14017 GO:0000816 molecular_function owl:Class GO:0000412 biolink:NamedThing histone peptidyl-prolyl isomerization The modification of a histone by cis-trans isomerization of a proline residue. tmpzr1t_l9r_go_relaxed.owl histone proline isomerization biological_process owl:Class GO:0052795 biolink:NamedThing exo-alpha-(2->6)-sialidase activity Catalysis of the hydrolysis of alpha-(2->6)-glycosidic linkages of terminal sialic residues in substrates. tmpzr1t_l9r_go_relaxed.owl exo-alpha-(2,6)-sialidase activity|exo-alpha-2,6-sialidase activity EC:3.2.1.18 molecular_function owl:Class GO:0071962 biolink:NamedThing mitotic sister chromatid cohesion, centromeric The cell cycle process in which centromeres of sister chromatids are joined during mitosis. tmpzr1t_l9r_go_relaxed.owl sister chromatid cohesion at centromere at mitosis|mitotic sister chromatid cohesion at centromere|centromeric mitotic sister chromatin cohesion mah 2011-06-02T11:24:17Z biological_process owl:Class GO:0019688 biolink:NamedThing purine deoxyribonucleoside interconversion The chemical reactions and pathways by which a purine deoxyribonucleoside is synthesized from another purine deoxyribonucleoside. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001325 biolink:NamedThing formation of extrachromosomal circular DNA Excision from the chromosome and circularization of a region of chromosomal DNA, generally, but not always, via homologous recombination between direct tandem repeats. tmpzr1t_l9r_go_relaxed.owl assembly of extrachromosomal circular DNA biological_process owl:Class GO:0071434 biolink:NamedThing cell chemotaxis to angiotensin The directed movement of a motile cell in response to the presence of angiotensin. tmpzr1t_l9r_go_relaxed.owl angiotensin mediated chemotaxis|angiotensin-mediated cell chemotaxis mah 2009-12-16T11:07:15Z biological_process owl:Class GO:0102733 biolink:NamedThing typhasterol C-23 hydroxylase activity Catalysis of the reaction: typhasterol + O2 + a reduced electron acceptor = castasterone + H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-719 molecular_function owl:Class GO:0046559 biolink:NamedThing alpha-glucuronidase activity Catalysis of the reaction: an alpha-D-glucuronoside + H2O = an alcohol + D-glucuronate. tmpzr1t_l9r_go_relaxed.owl alpha-glucosiduronase activity|alpha-D-glucosiduronate glucuronohydrolase activity MetaCyc:3.2.1.139-RXN|EC:3.2.1.139|RHEA:20005 molecular_function owl:Class GO:1990111 biolink:NamedThing spermatoproteasome complex A proteasome specifically found in mammalian testis. Contains the proteasome activator PA200 in the regulatory particle, and beta1i, beta2i, beta5i and/or alpha4s in the core (20S) subunit. Beta1i, beta2i and beta5i are inducible catalytic subunits, closely related to beta1, beta2 and beta5. Alpha4s is a sperm-specific 20S subunit, but unlike other alternative 20S subunits alpha4s lies in the outer alpha-ring and lacks catalytic activity. tmpzr1t_l9r_go_relaxed.owl sp 2013-05-31T11:56:52Z cellular_component owl:Class GO:0070513 biolink:NamedThing death domain binding Binding to a death domain of a protein. The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD bind each other forming oligomers. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB. tmpzr1t_l9r_go_relaxed.owl For binding to the death effector domain, consider instead the term 'death effector domain binding ; GO:0035877'. molecular_function owl:Class GO:0045051 biolink:NamedThing protein insertion into ER membrane by internal uncleaved signal-anchor sequence A process of protein insertion into the endoplasmic reticulum (ER) membrane in which signal anchor sequences function as both ER signal sequences and membrane anchor sequences. tmpzr1t_l9r_go_relaxed.owl protein insertion into ER membrane, internal uncleaved signal-anchor sequence mediated|protein insertion into endoplasmic reticulum membrane by internal uncleaved signal-anchor sequence|protein-endoplasmic reticulum insertion by internal uncleaved signal-anchor sequence|internal uncleaved signal-anchor sequence mediated protein insertion into ER membrane|protein-ER insertion by internal uncleaved signal-anchor sequence biological_process owl:Class GO:0061923 biolink:NamedThing (2S,3R,6S,9S)-(-)-protoillud-7-ene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (2S,3R,6S,9S)-(-)-protoillud-7-ene. tmpzr1t_l9r_go_relaxed.owl protoillud-7-ene synthase activity dph 2017-08-02T15:48:21Z molecular_function owl:Class GO:0048135 biolink:NamedThing female germ-line cyst formation Formation of a group of interconnected cells derived from a single female gonial founder cell. tmpzr1t_l9r_go_relaxed.owl female germline cyst formation biological_process owl:Class GO:1990166 biolink:NamedThing protein localization to site of double-strand break Any process in which a protein is transported to, or maintained at, a region of a chromosome at which a DNA double-strand break has occurred. tmpzr1t_l9r_go_relaxed.owl protein localisation to site of double-strand break|protein localization to double-strand break site|protein localization to site of DSB mah 2013-08-08T11:27:00Z biological_process owl:Class GO:0060494 biolink:NamedThing inductive mesenchymal-endodermal cell signaling Any process that mediates the transfer of information from a mesenchymal cell to an endodermal cell changing the fate of the endodermal cell. tmpzr1t_l9r_go_relaxed.owl inductive mesenchymal-endodermal cell signalling biological_process owl:Class GO:0030985 biolink:NamedThing high molecular weight kininogen binding Binding to a kininogen of high molecular mass. tmpzr1t_l9r_go_relaxed.owl HK binding|HMW kininogen binding molecular_function owl:Class GO:0006295 biolink:NamedThing nucleotide-excision repair, DNA incision, 3'-to lesion The endonucleolytic cleavage of the damaged strand of DNA 3' to the site of damage. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound. The incision precedes the incision formed 5' to the site of damage. tmpzr1t_l9r_go_relaxed.owl nucleotide-excision repair, DNA incision, 3' to lesion biological_process owl:Class GO:0034017 biolink:NamedThing trans-2-decenoyl-acyl-carrier-protein isomerase activity Catalysis of the reaction: trans-dec-2-enoyl-[acyl-carrier protein] = cis-dec-3-enoyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl trans-2-cis-3-decenoyl-ACP isomerase activity|decenoyl-acyl-carrier-protein delta2-trans-delta3-cis-isomerase activity|trans-2,cis-3-decenoyl-ACP isomerase activity|FabM|trans-2, cis-3 decenoyl-[acyl-carrier-protein] isomerase activity|beta-hydroxydecanoyl thioester dehydrase activity|trans-2, cis-3 decenoyl-ACP isomerase activity|trans-2-decenoyl-ACP isomerase activity RHEA:23568|EC:5.3.3.14|MetaCyc:5.3.3.14-RXN GO:0043832 molecular_function owl:Class GO:0044750 biolink:NamedThing high-affinity nickel cation transmembrane transporter activity Catalysis of the high-affinity transfer of nickel (Ni) cations from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl jl 2012-11-20T15:15:59Z molecular_function owl:Class GO:0102136 biolink:NamedThing 3-epi-6-deoxocathasterone C-23 hydroxylase activity Catalysis of the reaction: H+ + 3-epi-6-deoxocathasterone + reduced (NADPH-hemoprotein reducdtase) + O2 = 6=deoxotyphasterol + oxidized (NADPH-hemoprotein reductase) + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:27321|MetaCyc:RXN-11531|EC:1.14.14.147 molecular_function owl:Class GO:0018028 biolink:NamedThing peptidyl-lysine myristoylation The myristoylation of peptidyl-lysine to form peptidyl-N6-myristoyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl peptidyl-lysine myristylation RESID:AA0078 biological_process owl:Class GO:0021754 biolink:NamedThing facial nucleus development The process whose specific outcome is the progression of the facial nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009569 biolink:NamedThing chloroplast starch grain Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in chloroplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped. tmpzr1t_l9r_go_relaxed.owl chloroplast starch granule cellular_component owl:Class GO:0032299 biolink:NamedThing ribonuclease H2 complex A protein complex that possesses ribonuclease H activity, in which the catalytic subunit is a member of the RNase H2 (or HII) class. For example, in Saccharomyces the complex contains Rnh201p, Rnh202p and Rnh203p. tmpzr1t_l9r_go_relaxed.owl RNase H2 complex cellular_component owl:Class GO:0035366 biolink:NamedThing negative regulation of thymine transport Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl negative regulation of 5-methyluracil transport bf 2010-03-11T10:23:42Z biological_process owl:Class GO:0044373 biolink:NamedThing cytokinin binding Binding to a cytokinin, any of a class of adenine-derived compounds that can function in plants as growth regulators. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-01T03:42:10Z molecular_function owl:Class GO:0120327 biolink:NamedThing telopode A telopode is a plasma membrane bounded cell projection that is present on a telocyte and is tens to hundreds of microns long. Telopodes form a labyrinthine system communicating through gap junctions. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21973 krc 2021-08-16T16:45:21Z cellular_component owl:Class GO:0099077 biolink:NamedThing histone-dependent DNA binding DNA-binding activity that is dependent on binding to a histone. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090581 biolink:NamedThing protein-phosphocysteine-mannosylglycerate-phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + mannosylglycerate(out) = protein cysteine + mannosylglycerate phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0034008 biolink:NamedThing R-linalool synthase activity Catalysis of the reaction: geranyl diphosphate + H(2)O = (R)-linalool + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyl-diphosphate diphosphate-lyase [(3R)-linalool-forming] activity|(3R)-linalool synthase activity|(-)-3R-linalool synthase activity MetaCyc:4.2.3.26-RXN|RHEA:15809|KEGG_REACTION:R07632|EC:4.2.3.26 molecular_function owl:Class GO:0031912 biolink:NamedThing oral apparatus Complex basket- or funnel-like structure used by the cell to collect food and channel it to the cytostome; includes specialized sub-structures made up of closely-spaced cilia and underlying basal bodies and fibrillar systems. tmpzr1t_l9r_go_relaxed.owl Note that this term refers to a subcellular structure characteristic of ciliate protozoans, and should not be confused with oral anatomical structures of multicellular animals. cellular_component owl:Class GO:0097618 biolink:NamedThing dinoflagellate sulcal notch A dinoflagellate sulcus that extends all the way to the posterior end of the cell (also known as antapex). The presence of a sulcal notch makes the dinoflagellate hypocone appear bilobed. tmpzr1t_l9r_go_relaxed.owl dinoflagellate sulcus notch|sulcal notch The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. Also, the ventral (front) side of a dinoflagellate cell is the one where the sulcus is located (as opposed to the dorsal (back) side). The term 'sulcal notch' appears mostly in older literature; more recently, indication of a bilobed hypocone is used to express the same. pr 2014-06-27T16:28:49Z cellular_component owl:Class GO:0097612 biolink:NamedThing dinoflagellate sulcus A cell surface furrow that occurs on the ventral side of a dinoflagellate cell. It partially houses the longitudinal flagellum. The sulcus intersects with the cingulum on the ventral side of a dinoflagellate cell. tmpzr1t_l9r_go_relaxed.owl longitudinal groove|longitudinal furrow|sulcus The term name refers to a taxonomic group to make the label unique with respect to similarly-named anatomical structures. Also, the ventral (front) side of a dinoflagellate cell is the one where the sulcus is located (as opposed to the dorsal (back) side). pr 2014-06-09T11:31:05Z cellular_component owl:Class GO:0018268 biolink:NamedThing GPI anchor biosynthetic process via N-glycyl-glycosylphosphatidylinositolethanolamine The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-glycine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of a glycyl-peptide bond in the carboxy-terminal region of a membrane-associated protein. tmpzr1t_l9r_go_relaxed.owl GPI anchor synthesis via N-glycyl-glycosylphosphatidylinositolethanolamine|GPI anchor formation via N-glycyl-glycosylphosphatidylinositolethanolamine|GPI anchor anabolism via N-glycyl-glycosylphosphatidylinositolethanolamine RESID:AA0161 biological_process owl:Class GO:0031590 biolink:NamedThing wybutosine metabolic process The chemical reactions and pathways involving wybutosine, 3H-imidazo[1,2-alpha]purine-7-butanoic acid, 4,9-dihydro- alpha-[(methoxycarbonyl)amino]- 4,6-dimethyl-9-oxo- 3-beta-D-ribofuranosyl methyl ester, a modified nucleoside found in some tRNA molecules. tmpzr1t_l9r_go_relaxed.owl yW metabolic process|yW metabolism|wybutosine metabolism biological_process owl:Class GO:0039720 biolink:NamedThing virogenic stroma A nuclear viral factory formed by Baculoviruses. A vesicular structure in which virions are assembled. tmpzr1t_l9r_go_relaxed.owl VS bf 2013-12-19T15:45:32Z cellular_component owl:Class GO:0071128 biolink:NamedThing alpha5-beta1 integrin-osteopontin complex A protein complex that consists of an alpha5-beta1 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-SPP1 complex mah 2009-11-13T02:24:43Z cellular_component owl:Class GO:0031882 biolink:NamedThing type 5 somatostatin receptor binding Binding to a type 5 somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl type 5 somatostatin receptor ligand molecular_function owl:Class GO:0018702 biolink:NamedThing 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene dehalogenase activity Catalysis of the reaction: 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene + H+ + 2 e- = Cl- + 1-chloro-2,2-bis(4-chlorophenyl)ethene. 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene is also known as DDE; 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU. tmpzr1t_l9r_go_relaxed.owl DDE dehalogenase activity|1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene dehalogenase activity EC:1.97.1.-|UM-BBD_reactionID:r0440 molecular_function owl:Class GO:0044220 biolink:NamedThing host cell perinuclear region of cytoplasm The host cell cytoplasm situated near, or occurring around, the host nucleus. tmpzr1t_l9r_go_relaxed.owl jl 2009-11-12T02:58:13Z cellular_component owl:Class GO:0034580 biolink:NamedThing 4-methyloctanoyl-CoA dehydrogenase activity Catalysis of the reaction: 4-methyloctanoyl-CoA = 4-methyloct-2-enoyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl EC:1.3.99.-|UM-BBD_reactionID:r0924 molecular_function owl:Class GO:0039606 biolink:NamedThing suppression by virus of host translation initiation Any process in which a virus prevents or reduces the frequency, rate or extent of host translation initiation, the host process preceding formation of the peptide bond between the first two amino acids of a protein. tmpzr1t_l9r_go_relaxed.owl bf 2012-07-05T04:44:10Z biological_process owl:Class GO:0018020 biolink:NamedThing peptidyl-glutamic acid methylation The addition of a methyl group to a glutamic acid residue in a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031789 biolink:NamedThing G protein-coupled acetylcholine receptor binding Binding to a G protein-coupled acetylcholine receptor. tmpzr1t_l9r_go_relaxed.owl M2 muscarinic acetylcholine receptor ligand|G-protein coupled acetylcholine receptor binding|M1 muscarinic acetylcholine receptor ligand|M5 muscarinic acetylcholine receptor binding|M3 muscarinic acetylcholine receptor binding|muscarinic acetylcholine receptor binding|M1 muscarinic acetylcholine receptor binding|M2 muscarinic acetylcholine receptor binding|M5 muscarinic acetylcholine receptor ligand|M4 muscarinic acetylcholine receptor ligand|M4 muscarinic acetylcholine receptor binding|muscarinic acetylcholine receptor ligand|M3 muscarinic acetylcholine receptor ligand GO:0031790|GO:0031794|GO:0031793|GO:0031791|GO:0031792 molecular_function owl:Class GO:0071570 biolink:NamedThing cement gland development The process whose specific outcome is the progression of the cement gland over time, from its formation to the mature structure. The cement gland is a simple mucus-secreting organ positioned at the anterior of amphibious embryos. The cement gland attaches the newly hatched embryo to a support before the hatchling can swim well or feed. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:31:04Z biological_process owl:Class GO:1990537 biolink:NamedThing mitotic spindle polar microtubule Any of the mitotic spindle microtubules that come from each pole and overlap at the spindle midzone. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-14T15:32:38Z cellular_component owl:Class GO:0019033 biolink:NamedThing viral tegument A structure lying between the capsid and envelope of a virus, varying in thickness and often distributed asymmetrically. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Viral_tegument cellular_component owl:Class GO:0009016 biolink:NamedThing succinyldiaminopimelate transaminase activity Catalysis of the reaction: 2-oxoglutarate + N-succinyl-LL-2,6-diaminopimelate = L-2-succinylamino-6-oxopimelate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl succinyldiaminopimelate aminotransferase activity|N-succinyl-L-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase activity|N-succinyl-L-diaminopimelic glutamic transaminase activity|succinyldiaminopimelate transferase activity KEGG_REACTION:R04475|MetaCyc:SUCCINYLDIAMINOPIMTRANS-RXN|EC:2.6.1.17|RHEA:11960 molecular_function owl:Class GO:0004048 biolink:NamedThing anthranilate phosphoribosyltransferase activity Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate. tmpzr1t_l9r_go_relaxed.owl phosphoribosyl-anthranilate pyrophosphorylase activity|anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase activity|anthranilate-PP-ribose-P phosphoribosyltransferase activity|phosphoribosyl-anthranilate diphosphorylase activity|anthranilate phosphoribosylpyrophosphate phosphoribosyltransferase activity|phosphoribosylanthranilate transferase activity|phosphoribosylanthranilate pyrophosphorylase activity|N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase activity|PRT RHEA:11768|MetaCyc:PRTRANS-RXN|EC:2.4.2.18|KEGG_REACTION:R01073 molecular_function owl:Class GO:0051148 biolink:NamedThing negative regulation of muscle cell differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl downregulation of muscle cell differentiation|down-regulation of muscle cell differentiation|inhibition of muscle cell differentiation|down regulation of muscle cell differentiation biological_process owl:Class GO:0046067 biolink:NamedThing dGDP catabolic process The chemical reactions and pathways resulting in the breakdown of dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate). tmpzr1t_l9r_go_relaxed.owl dGDP catabolism|dGDP degradation|dGDP breakdown biological_process owl:Class GO:0018080 biolink:NamedThing peptidyl-tryptophan bromination The bromination of peptidyl-tryptophan, to form peptidyl-L-6'-bromotryptophan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0179 biological_process owl:Class GO:0004676 biolink:NamedThing 3-phosphoinositide-dependent protein kinase activity Phosphatidylinositol-3-phosphate-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl PDK activity|phosphatidylinositol-3-phosphate protein kinase activity Reactome:R-HSA-437195 This reaction requires the presence of a phosphatidylinositol-3-phosphate. molecular_function owl:Class GO:0018663 biolink:NamedThing 2,6-dihydroxypyridine 3-monooxygenase activity Catalysis of the reaction: 2,6-dihydroxypyridine + H(+) + NADH + O(2) = 2,3,6-trihydroxypyridine + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 2,6-dihydroxypyridine oxidase activity|2,6-dihydroxypyridine,NADH:oxygen oxidoreductase (3-hydroxylating) KEGG_REACTION:R04130|UM-BBD_reactionID:r0479|MetaCyc:1.14.13.10-RXN|RHEA:16917|EC:1.14.13.10 molecular_function owl:Class GO:0046866 biolink:NamedThing tetraterpenoid transport The directed movement of tetraterpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetraterpenoids are terpenoids with eight isoprene units. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102329 biolink:NamedThing hentriaconta-3,6,9,12,19,22,25,28-octaene-16-one-15-oyl-CoA reductase activity Catalysis of the reaction: 16-hydroxy-hentriaconta-3,6,9,12,19,22,25,28-octaene-15-oyl-CoA + NADP <=> hentriaconta-3,6,9,12,19,22,25,28-octaene-16-one-15-oyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13251 molecular_function owl:Class GO:0047374 biolink:NamedThing methylumbelliferyl-acetate deacetylase activity Catalysis of the reaction: 4-methylumbelliferyl acetate + H(2)O = 4-methylumbelliferone + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl 4-methylumbelliferyl-acetate acylhydrolase activity|esterase D activity RHEA:12208|MetaCyc:3.1.1.56-RXN|EC:3.1.1.56|KEGG_REACTION:R04141 molecular_function owl:Class GO:0008236 biolink:NamedThing serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). tmpzr1t_l9r_go_relaxed.owl serine protease activity Reactome:R-HSA-1461993|Reactome:R-HSA-2022383|Reactome:R-HSA-3132753|Reactome:R-HSA-6801766 molecular_function owl:Class GO:0021646 biolink:NamedThing vagus nerve formation The process that gives rise to the vagus nerve. This process pertains to the initial formation of a structure from unspecified parts. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis. tmpzr1t_l9r_go_relaxed.owl CN X biosynthesis|CN X formation biological_process owl:Class GO:0019664 biolink:NamedThing mixed acid fermentation The anaerobic chemical reactions and pathways resulting in the breakdown of glucose into ethanol, lactate, formate, succinate, and acetate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl glucose catabolic process to mixed acids|glucose fermentation to mixed acids Wikipedia:Mixed_acid_fermentation biological_process owl:Class GO:0140207 biolink:NamedThing tripeptide import across plasma membrane The directed movement of a tripeptide from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-22T15:49:55Z biological_process owl:Class GO:0050032 biolink:NamedThing L-rhamnonate dehydratase activity Catalysis of the reaction: L-rhamnonate = 2-dehydro-3-deoxy-L-rhamnonate + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-rhamnonate hydro-lyase activity|L-rhamnonate hydro-lyase (2-dehydro-3-deoxy-L-rhamnonate-forming) EC:4.2.1.90|MetaCyc:L-RHAMNONATE-DEHYDRATASE-RXN|RHEA:23080|KEGG_REACTION:R03774 molecular_function owl:Class GO:0042030 biolink:NamedThing ATPase inhibitor activity Binds to and stops, prevents or reduces an ATP hydrolysis activity. tmpzr1t_l9r_go_relaxed.owl adenosinetriphosphatase inhibitor https://github.com/geneontology/go-ontology/issues/20955 molecular_function owl:Class GO:0036486 biolink:NamedThing ventral trunk neural crest cell migration The movement of trunk neural crest cells from the neural tube, travelling ventrally through the anterior half of each sclerotome. Trunk neural crest cells that remain in the sclerotome form the dorsal root ganglia containing the sensory neurons. Trunk neural crest cells that continue more ventrally form the sympathetic ganglia, the adrenal medulla, and the nerve clusters surrounding the aorta. tmpzr1t_l9r_go_relaxed.owl trunk NCC migration within somite|trunk NCC migration through anterior sclerotome|ventral trunk NCC migration bf 2014-08-26T15:30:16Z biological_process owl:Class GO:0070612 biolink:NamedThing histone methyltransferase activity (H2A-R3 specific) Catalysis of the reaction: S-adenosyl-L-methionine + (histone H2A)-arginine (position 3) = S-adenosyl-L-homocysteine + (histone H2A)-N-methyl-arginine (position 3). This reaction is the addition of a methyl group to arginine at position 3 of histone H2A. tmpzr1t_l9r_go_relaxed.owl histone-arginine N-methyltransferase activity (H2A-R3 specific)|histone methylase activity (H2A-R3 specific) mah 2009-04-29T02:06:45Z molecular_function owl:Class GO:0061574 biolink:NamedThing ASAP complex A protein complex involved in regulation of mRNA processing and apoptosis. It binds to RNA in a sequence-independent manner and is recruited to the EJC prior to or during the splicing process. In humans the core proteins are RNPS1, SAP18 and ACIN1. tmpzr1t_l9r_go_relaxed.owl dph 2013-10-08T13:09:16Z cellular_component owl:Class GO:0010408 biolink:NamedThing fasciclin-like arabinogalactan protein metabolic process The chemical reactions and pathways involving the cell wall arabinogalactan II glycoprotein variant which contains both an arabinogalactan protein (AGP) motif and a fasciclin domain. tmpzr1t_l9r_go_relaxed.owl fasciclin-like arabinogalactan protein metabolism biological_process owl:Class GO:0010405 biolink:NamedThing arabinogalactan protein metabolic process The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, O-3 and O-6 positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures. tmpzr1t_l9r_go_relaxed.owl arabinogalactan protein metabolism biological_process owl:Class GO:0106177 biolink:NamedThing cyclic-GMP-AMP hydrolase activity Catalysis of the reaction: cyclic GMP-AMP + 2 H2O = AMP + GMP. tmpzr1t_l9r_go_relaxed.owl RHEA:58808 hjd 2019-03-07T21:06:24Z molecular_function owl:Class GO:0098735 biolink:NamedThing positive regulation of the force of heart contraction Any process that increases the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034131 biolink:NamedThing regulation of toll-like receptor 1 signaling pathway Any process that modulates the frequency, rate, or extent of toll-like receptor 1 signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of toll-like receptor 1 signalling pathway|regulation of TLR1 signaling pathway biological_process owl:Class GO:0072703 biolink:NamedThing cellular response to methyl methanesulfonate Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methyl methanesulfonate (MMS) stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to MMS mah 2012-04-11T03:04:18Z biological_process owl:Class GO:0072702 biolink:NamedThing response to methyl methanesulfonate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methyl methanesulfonate (MMS) stimulus. tmpzr1t_l9r_go_relaxed.owl response to MMS mah 2012-04-11T03:04:12Z biological_process owl:Class GO:0042426 biolink:NamedThing choline catabolic process The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. tmpzr1t_l9r_go_relaxed.owl choline catabolism|choline degradation|choline breakdown biological_process owl:Class GO:1905069 biolink:NamedThing allantois development The process whose specific outcome is the progression of an allantois over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl allantoic bud development cls 2016-03-21T15:18:21Z biological_process owl:Class GO:0001758 biolink:NamedThing retinal dehydrogenase activity Catalysis of the reaction: retinal + NAD+ + H2O = retinoate + NADH. Acts on both 11-trans and 13-cis forms of retinal. tmpzr1t_l9r_go_relaxed.owl retinal:NAD+ oxidoreductase activity|cytosolic retinal dehydrogenase activity RHEA:16177|EC:1.2.1.36|MetaCyc:RETINAL-DEHYDROGENASE-RXN|Reactome:R-HSA-5696101|Reactome:R-HSA-5362522 molecular_function owl:Class GO:0004692 biolink:NamedThing cGMP-dependent protein kinase activity cGMP dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl PKG 1alpha|ATP:protein phosphotransferase (cGMP-dependent) activity|PKG|PKG II|STK23|cGMP-dependent protein kinase ibeta activity|3':5'-cyclic GMP-dependent protein kinase activity|guanosine 3':5'-cyclic monophosphate-dependent protein kinase activity|PKG 1beta MetaCyc:2.7.11.12-RXN|Reactome:R-HSA-418549|Reactome:R-HSA-1497853|Reactome:R-HSA-1475422|Reactome:R-HSA-418442|EC:2.7.11.12 This reaction requires the presence of cGMP. molecular_function owl:Class GO:0004690 biolink:NamedThing cyclic nucleotide-dependent protein kinase activity cNMP-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl This reaction requires the presence of a cyclic nucleotide. molecular_function owl:Class GO:0031478 biolink:NamedThing myosin VIII complex A myosin complex containing a dimer of class VIII myosin heavy chains and associated light chains. Myosin VIII is predicted to be dimeric, and contain an unusual 100-190 residue N-terminal extension prior to their motor domains, 3-4 IQ motifs, a short region (~70 residues) of predicted alpha-helical coiled coil and a C-terminal domain. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0009731 biolink:NamedThing detection of sucrose stimulus The series of events in which a sucrose stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of sucrose stimulus biological_process owl:Class GO:0070194 biolink:NamedThing synaptonemal complex disassembly The controlled breakdown of a synaptonemal complex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051717 biolink:NamedThing inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity Catalysis of the reaction: inositol-1,3,4,5-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol 1,3,4,5-tetrakisphosphate 3-phosphomonoesterase activity|inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase activity|inositol 1,3,4,5-tetrakisphosphate-5-phosphomonoesterase activity Reactome:R-HSA-1855205|MetaCyc:3.1.3.62-RXN|Reactome:R-HSA-1855200 molecular_function owl:Class GO:0002414 biolink:NamedThing immunoglobulin transcytosis in epithelial cells The process of transporting immunoglobulin, via transcytosis, from one side of an epithelial cell to the other. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071054 biolink:NamedThing alpha9-beta1 integrin-ADAM3 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM3. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM3 complex mah 2009-11-03T03:59:02Z cellular_component owl:Class GO:0004657 biolink:NamedThing proline dehydrogenase activity Catalysis of the reaction: L-proline + acceptor = (S)-1-pyrroline-5-carboxylate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl L-proline:acceptor oxidoreductase activity|L-proline dehydrogenase activity|L-proline:(acceptor) oxidoreductase activity MetaCyc:RXN-7181|Reactome:R-HSA-6784224|Reactome:R-HSA-70670|RHEA:23784|EC:1.5.99.8|Reactome:R-HSA-8955817 molecular_function owl:Class GO:0140441 biolink:NamedThing protein-cysteine S-arachidonoyltransferase activity Catalysis of the transfer of an arachidonoyl (systematic name, (5Z,8Z,11Z,14Z)-eicosatetraenoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: in the reaction: (5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoA + L-cysteinyl-[protein] = CoA + S-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-L-cysteinyl-[protein]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18882 RHEA:59748 pg 2020-03-11T09:56:24Z molecular_function owl:Class GO:0102596 biolink:NamedThing cytochrome P450 dependent ent-sandaracopimaradiene 3-hydroxylase activity Catalysis of the reaction: ent-sandaracopimara-8(14),15-diene + NADPH + H+ + O2 <=> ent-sandaracopimaradien-3beta-ol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15379|RHEA:41464|EC:1.14.14.70 molecular_function owl:Class GO:0010653 biolink:NamedThing negative regulation of cell communication by chemical coupling Any process that decreases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042137 biolink:NamedThing sequestering of neurotransmitter The process of binding or confining a neurotransmitter such that it is separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl retention of neurotransmitter|sequestration of neurotransmitter|neurotransmitter storage|neurotransmitter retention|neurotransmitter biosynthesis and storage|storage of neurotransmitter|neurotransmitter biosynthetic process and storage|neurotransmitter sequestration biological_process owl:Class GO:0051018 biolink:NamedThing protein kinase A binding Binding to a protein kinase A. tmpzr1t_l9r_go_relaxed.owl PKA binding|protein kinase A anchoring activity Note that this term is a direct child of 'protein binding ; GO:0005515' because it encompasses binding to either the catalytic or regulatory subunit of protein kinase A, and the latter does not have kinase activity. molecular_function owl:Class GO:0048453 biolink:NamedThing sepal formation The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048423 biological_process owl:Class GO:0033222 biolink:NamedThing xylose binding Binding to the D- or L-enantiomer of xylose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050402 biolink:NamedThing xylono-1,4-lactonase activity Catalysis of the reaction: D-xylono-1,4-lactone + H2O = D-xylonate. tmpzr1t_l9r_go_relaxed.owl xylonolactonase activity|xylono-g-lactonase activity|D-xylono-1,4-lactone lactonohydrolase activity RHEA:18341|MetaCyc:XYLONO-14-LACTONASE-RXN|EC:3.1.1.68 molecular_function owl:Class GO:0035479 biolink:NamedThing angioblast cell migration from lateral mesoderm to midline The directed movement of angioblasts from the lateral mesoderm to the midline which occurs as part of the formation of the early midline vasculature. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:38:05Z biological_process owl:Class GO:0102805 biolink:NamedThing codeine O-demethylase activity Catalysis of the reaction: codeine + 2-oxoglutarate + O2 <=> morphine + formaldehyde + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl RHEA:27413|EC:1.14.11.32|MetaCyc:RXN-8152 molecular_function owl:Class GO:0106212 biolink:NamedThing centromere detachment from spindle pole body involved in meiotic chromosome organization The cell cycle process in which centromeres dissociate from the spindle pole body, contributing to the rearrangement of chromosomes into the orientation characteristic of meiotic prophase I. tmpzr1t_l9r_go_relaxed.owl centromere detachment from SPB involved in meiotic chromosome organization|centromere detachment from spindle pole body involved in chromosome organization involved in meiotic cell cycle hjd 2019-06-25T18:28:39Z biological_process owl:Class GO:0033982 biolink:NamedThing 3-dehydro-L-gulonate-6-phosphate decarboxylase activity Catalysis of the reaction: 3-dehydro-L-gulonate 6-phosphate + H(+) = L-xylulose 5-phosphate + CO(2). tmpzr1t_l9r_go_relaxed.owl KGPDC|UlaD|3-keto-L-gulonate 6-phosphate decarboxylase activity|3-dehydro-L-gulonate-6-phosphate carboxy-lyase (L-xylulose-5-phosphate-forming) activity|SgaH|SgbH|3-dehydro-L-gulonate-6-phosphate carboxy-lyase activity EC:4.1.1.85|MetaCyc:RXN0-705|RHEA:14353|KEGG_REACTION:R07125 molecular_function owl:Class GO:0090497 biolink:NamedThing mesenchymal cell migration The orderly movement of a mesenchymal cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-17T12:08:17Z biological_process owl:Class GO:1990196 biolink:NamedThing MacAB-TolC complex The MacAB-TolC complex is a macrolide transporter complex found in E.coli and related gram-negative bacteria. Its transport activity is specific to macrolide compounds containing 14- and 15-membered lactones. It consists of the dimeric inner membrane ATPase MacB, the hexameric, periplasmic membrane fusion protein MacA and the trimeric outer membrane factor TolC. tmpzr1t_l9r_go_relaxed.owl macrolide transporter MacAB-TolC complex bhm 2013-09-23T11:29:28Z cellular_component owl:Class GO:0050617 biolink:NamedThing 15,16-dihydrobiliverdin:ferredoxin oxidoreductase activity Catalysis of the reaction: 15,16-dihydrobiliverdin + oxidized ferredoxin = biliverdin IXa + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl PebA EC:1.3.7.2|RHEA:10168|MetaCyc:1.3.7.2-RXN molecular_function owl:Class GO:0044180 biolink:NamedThing filamentous growth of a unicellular organism The process in which a unicellular organism grows in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl jl 2009-09-25T10:16:01Z biological_process owl:Class GO:0050086 biolink:NamedThing mannitol 2-dehydrogenase activity Catalysis of the reaction: D-mannitol + NAD+ = D-fructose + NADH. tmpzr1t_l9r_go_relaxed.owl D-mannitol dehydrogenase activity|D-mannitol:NAD+ 2-oxidoreductase activity EC:1.1.1.67|RHEA:12084|MetaCyc:MANNITOL-2-DEHYDROGENASE-RXN molecular_function owl:Class GO:0061911 biolink:NamedThing amphisome-lysosome fusion The process in which amphisomes fuse with a vacuole (yeast) or lysosome (e.g. mammals and insects). In the case of yeast, inner membrane-bounded structures (autophagic bodies) appear in the vacuole. Fusion provides an acidic environment and digestive function to the interior of the amphisome. tmpzr1t_l9r_go_relaxed.owl dph 2017-07-05T18:54:52Z biological_process owl:Class GO:0046269 biolink:NamedThing toluene-4-sulfonate catabolic process The chemical reactions and pathways resulting in the breakdown of toluene-4-sulfonate, 4-methylbenzenesulfonate, the anion of sulfonic acid attached to a methylbenzene molecule. tmpzr1t_l9r_go_relaxed.owl toluene-4-sulfonate breakdown|4-toluenesulfonate catabolism|toluene-4-sulphonate catabolic process|toluene-4-sulfonate catabolism|toluene-4-sulfonate degradation|4-toluenesulfonate catabolic process|toluene-4-sulphonate catabolism biological_process owl:Class GO:0071134 biolink:NamedThing alpha9-beta1 integrin-thrombospondin-1 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to thrombospondin-1. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-THBS1 complex mah 2009-11-13T02:29:07Z cellular_component owl:Class GO:0015950 biolink:NamedThing purine nucleotide interconversion The chemical reactions and pathways by which a purine nucleotide is synthesized from another purine nucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030506 biolink:NamedThing ankyrin binding Binding to ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006025 biolink:NamedThing galactosaminoglycan biosynthetic process The chemical reactions and pathways resulting in the formation of galactosaminoglycans, any of a group of polysaccharides that contain amino sugars derived from the galactose. tmpzr1t_l9r_go_relaxed.owl galactosaminoglycan synthesis|galactosaminoglycan biosynthesis|galactosaminoglycan anabolism|galactosaminoglycan formation biological_process owl:Class GO:0097093 biolink:NamedThing polyacyltrehalose biosynthetic process The chemical reactions and pathways resulting in the formation of polyacyltrehalose, a pentaacylated, trehalose-based glycolipid. tmpzr1t_l9r_go_relaxed.owl polyacyltrehalose formation|polyacyltrehalose synthesis|polyacyltrehalose biosynthesis|polyacyltrehalose anabolism pr 2011-07-05T02:01:08Z biological_process owl:Class GO:0097092 biolink:NamedThing polyacyltrehalose metabolic process The chemical reactions and pathways involving polyacyltrehalose, a pentaacylated, trehalose-based glycolipid. tmpzr1t_l9r_go_relaxed.owl polyacyltrehalose metabolism pr 2011-07-05T01:58:28Z biological_process owl:Class GO:0033406 biolink:NamedThing UCC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UCC codon. tmpzr1t_l9r_go_relaxed.owl serine tRNA|TCC codon-amino acid adaptor activity Note that in the standard genetic code, TCC codes for serine. molecular_function owl:Class GO:0008226 biolink:NamedThing tyramine receptor activity Combining with the biogenic amine tyramine to initiate a change in cell activity. Tyramine is a sympathomimetic amine derived from tyrosine with an action resembling that of epinephrine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102800 biolink:NamedThing caffeoyl-CoA:pelargonidin-3,5-diglucoside-6''-O-acyltransferase activity Catalysis of the reaction: anthocyanidin 3,5-di-O-beta-D-glucoside + caffeoyl-CoA = pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8138 molecular_function owl:Class GO:0033855 biolink:NamedThing nicotianamine aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + nicotianamine = 3''-deamino-3''-oxonicotianamine + L-glutamate. tmpzr1t_l9r_go_relaxed.owl NAAT-II|nicotianamine transaminase activity|NAAT-I|NAAT-III|NAAT|nicotianamine:2-oxoglutarate aminotransferase activity KEGG_REACTION:R07277|MetaCyc:2.6.1.80-RXN|EC:2.6.1.80|RHEA:22104 molecular_function owl:Class GO:0072370 biolink:NamedThing histone H2A-S121 phosphorylation The modification of histone H2A by the addition of an phosphate group to a serine residue at position 121 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2AS121 phosphorylation|histone H2A phosphorylation at S121 mah 2010-11-16T03:42:52Z biological_process owl:Class GO:0034618 biolink:NamedThing arginine binding Binding to 2-amino-5-(carbamimidamido)pentanoic acid. tmpzr1t_l9r_go_relaxed.owl Arg binding|aminopentanoic acid binding molecular_function owl:Class GO:0048067 biolink:NamedThing cuticle pigmentation Establishment of a pattern of pigment in the cuticle of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052064 biolink:NamedThing induction by symbiont of defense-related host reactive oxygen species production The activation by a symbiont of the production of reactive oxygen species as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by symbiont of defense-related host ROI production|activation by symbiont of defense-related host oxidative burst|activation by symbiont of defense-related host respiratory burst|induction by organism of defense-related reactive oxygen species production in other organism involved in symbiotic interaction|activation by symbiont of defense-related host metabolic burst|up-regulation by symbiont of defense-related host reactive oxygen species production|upregulation by symbiont of defense-related host reactive oxygen species production|induction by symbiont of defense-related host reactive oxidative species production|induction by symbiont of defense-related host oxidative burst|activation by symbiont of defense-related host reactive oxygen species production|stimulation by symbiont of defense-related host reactive oxygen species production|positive regulation by symbiont of defense-related host reactive oxygen species production|activation by symbiont of defense-related host reactive oxidative species production|activation by symbiont of defense-related host reactive oxygen intermediate production|positive regulation by organism of defense-related reactive oxygen species production in other organism involved in symbiotic interaction|induction by symbiont of defense-related reactive oxygen species production in other organism involved in symbiotic interaction|induction by symbiont of defense-related host AOS production|induction by symbiont of defense-related host metabolic burst|activation by symbiont of defense-related host ROS production|up regulation by symbiont of defense-related host reactive oxygen species production|induction by symbiont of defense-related host active oxygen species production GO:0052348|GO:0052369|GO:0052264 biological_process owl:Class GO:1902521 biolink:NamedThing response to etoposide Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an etoposide stimulus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. dw 2013-12-02T09:44:22Z biological_process owl:Class GO:0120155 biolink:NamedThing MIH complex A trimeric complex involved in cytokinesis. Proposed to bridge actomyosin ring contraction and septum synthesis in yeast, resulting in the coordination of these processes, and leading to plasma membrane ingression and fusion. In the yeast Saccharomyces cerevisiae this complex consists of Mlc1p, Iqg1p and Hof1p proteins. tmpzr1t_l9r_go_relaxed.owl Mlc1p-Iqg1p-Hof1p complex krc 2018-05-01T17:50:23Z cellular_component owl:Class GO:0047006 biolink:NamedThing 17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity Catalysis of the reaction: NAD(P)+ + 17-alpha,20-alpha-dihydroxypregn-4-en-3-one = NAD(P)H + H+ + 17-alpha-hydroxyprogesterone. tmpzr1t_l9r_go_relaxed.owl 20alpha-hydroxy steroid dehydrogenase activity|20alpha-HSD|20alpha-hydroxysteroid dehydrogenase|20alpha-HSDH|20alpha-hydroxysteroid:NAD(P)+ 20-oxidoreductase activity MetaCyc:1.1.1.149-RXN|EC:1.1.1.149 molecular_function owl:Class GO:1902552 biolink:NamedThing negative regulation of catalase activity Any process that stops, prevents or reduces the frequency, rate or extent of catalase activity. tmpzr1t_l9r_go_relaxed.owl downregulation of equilase activity|inhibition of heme catalase activity|down regulation of optidase activity|down-regulation of catalase reaction|inhibition of CAT|inhibition of manganese catalase activity|down-regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|negative regulation of bacterial catalase-peroxidase activity|downregulation of manganese catalase activity|down-regulation of catalase-peroxidase activity|negative regulation of CAT|negative regulation of optidase activity|inhibition of caperase activity|inhibition of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|down regulation of catalase-peroxidase activity|down regulation of CAT|inhibition of bacterial catalase-peroxidase activity|inhibition of catalase activity|inhibition of equilase activity|downregulation of optidase activity|inhibition of haem catalase activity|down-regulation of catalase activity|down regulation of equilase activity|down regulation of catalase activity|negative regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|inhibition of optidase activity|negative regulation of catalase reaction|negative regulation of manganese catalase activity|inhibition of catalase reaction|down regulation of caperase activity|downregulation of catalase reaction|downregulation of bacterial catalase-peroxidase activity|down-regulation of CAT|downregulation of haem catalase activity|down-regulation of caperase activity|downregulation of CAT|down regulation of manganese catalase activity|down regulation of haem catalase activity|down regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|negative regulation of heme catalase activity|negative regulation of caperase activity|downregulation of caperase activity|down-regulation of equilase activity|down-regulation of bacterial catalase-peroxidase activity|downregulation of catalase activity|negative regulation of haem catalase activity|inhibition of catalase-peroxidase activity|downregulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity|down-regulation of heme catalase activity|downregulation of catalase-peroxidase activity|down regulation of catalase reaction|negative regulation of catalase-peroxidase activity|down regulation of heme catalase activity|down-regulation of manganese catalase activity|negative regulation of equilase activity|down-regulation of optidase activity|down regulation of bacterial catalase-peroxidase activity|down-regulation of haem catalase activity|downregulation of heme catalase activity tb 2013-12-04T21:55:55Z biological_process owl:Class GO:0034004 biolink:NamedThing germacradienol synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + H2O = (1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol-forming] activity KEGG_REACTION:R07647|MetaCyc:RXN-8648|RHEA:22436|EC:4.2.3.22 molecular_function owl:Class GO:0019261 biolink:NamedThing 1,4-dichlorobenzene catabolic process The chemical reactions and pathways resulting in the breakdown of 1,4-dichlorobenzene (p-dichlorobenzene or paramoth), a derivative of benzene with two chlorine atoms attached at opposite positions on the ring. tmpzr1t_l9r_go_relaxed.owl 1,4-dichlorobenzene catabolism|1,4-dichlorobenzene breakdown|1,4-dichlorobenzene degradation MetaCyc:14DICHLORBENZDEG-PWY biological_process owl:Class GO:0015614 biolink:NamedThing ABC-type D-xylose transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-xylose(out) -> ADP + phosphate + D-xylose(in). tmpzr1t_l9r_go_relaxed.owl D-xylose porter activity|D-xylose-importing ATPase activity|ATPase-coupled D-xylose transmembrane transporter activity EC:7.5.2.10|RHEA:29899 molecular_function owl:Class GO:0033824 biolink:NamedThing alternansucrase activity Catalysis of the transfer of an alpha-D-glucosyl residue from sucrose to alternately the 6-position and the 3-position of the non-reducing terminal residue of an alpha-D-glucan, thus producing a glucan having alternating alpha-1,6- and alpha-1,3-linkages. tmpzr1t_l9r_go_relaxed.owl sucrose:1,6-, 1,3-alpha-D-glucan 3-alpha- and 6-alpha-D-glucosyltransferase activity|sucrose:1,6(1,3)-alpha-D-glucan 6(3)-alpha-D-glucosyltransferase activity|sucrose-1,6(3)-alpha-glucan 6(3)-alpha-glucosyltransferase activity MetaCyc:2.4.1.140-RXN|EC:2.4.1.140 molecular_function owl:Class GO:0005364 biolink:NamedThing maltose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: maltose(out) + H+(out) = maltose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl maltose permease|hydrogen/maltose transporter activity|maltose:hydrogen symporter activity molecular_function owl:Class GO:0018402 biolink:NamedThing protein-chondroitin sulfate linkage via chondroitin sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine Chondroitin sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues. tmpzr1t_l9r_go_relaxed.owl protein-chondroitin sulphate linkage via chondroitin sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine RESID:AA0208 biological_process owl:Class GO:0070824 biolink:NamedThing SHREC complex A histone deacetylase complex that contains a core of four proteins -- Clr1, Clr2, Clr3, and Mit1 in fission yeast -- and localizes to all heterochromatic regions in the genome as well as some euchromatic sites. The complex is involved in regulating nucleosome positioning to assemble higher-order chromatin structures. tmpzr1t_l9r_go_relaxed.owl Snf2/Hdac repressive complex|Snf2/HDAC containing repressor complex https://github.com/geneontology/go-ontology/issues/20938 mah 2009-07-20T05:02:12Z cellular_component owl:Class GO:0052798 biolink:NamedThing beta-galactoside alpha-2,3-sialyltransferase activity Catalysis of the transfer of sialyl residues alpha-2,3-linked to a beta galactosyl residue on the donor to form an alpha-2,3 linkage to a terminal beta galactosyl residue on the acceptor. tmpzr1t_l9r_go_relaxed.owl trans-sialidase activity molecular_function owl:Class GO:0033778 biolink:NamedThing 7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity Catalysis of the reaction: 7alpha-hydroxycholest-4-en-3-one + H(+) + NADPH + O(2) = 7alpha,12alpha-dihydroxycholest-4-en-3-one + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl 7alpha-hydroxy-4-cholesten-3-one 12alpha-monooxygenase activity|7alpha-hydroxycholest-4-en-3-one,NADPH:oxygen oxidoreductase (12alpha-hydroxylating) activity|CYP12|HCO 12alpha-hydroxylase activity|sterol 12alpha-hydroxylase activity RHEA:10504|MetaCyc:1.14.13.95-RXN|Reactome:R-HSA-193845|KEGG_REACTION:R04826|EC:1.14.14.139|Reactome:R-HSA-193709|Reactome:R-HSA-192157 molecular_function owl:Class GO:1905594 biolink:NamedThing resveratrol binding Binding to resveratrol. tmpzr1t_l9r_go_relaxed.owl (5-(aziridin-1-yl)-2,4-dinitrobenzamide pga 2016-10-25T15:23:37Z molecular_function owl:Class GO:0120201 biolink:NamedThing cone photoreceptor disc membrane Stack of disc membranes located inside a cone photoreceptor outer segment, and containing densely packed molecules of opsin photoreceptor proteins that traverse the lipid bilayer. Cone disc membranes arise as evaginations of the ciliary membrane during the development of the cone outer segment and remain contiguous with the ciliary membrane. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-07T23:17:43Z cellular_component owl:Class GO:0043769 biolink:NamedThing Tpg-containing telomere binding complex A complex composed of four polypeptides, a telomere-protecting terminal protein (Tpg), a telomere-associated protein (Tap), DNA polymerase (PolA) and topoisomerase I (TopA), that functions in the replication of the telomeric regions of linear chromosomes, plasmids and circular replicons of some bacterial species. tmpzr1t_l9r_go_relaxed.owl telomere complex cellular_component owl:Class GO:0031734 biolink:NamedThing CCR9 chemokine receptor binding Binding to a CCR9 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR9 chemokine receptor ligand molecular_function owl:Class GO:1903259 biolink:NamedThing exon-exon junction complex disassembly The disaggregation of an exon-exon junction complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl EJC disassembly sart 2014-08-06T09:44:06Z biological_process owl:Class GO:0006433 biolink:NamedThing prolyl-tRNA aminoacylation The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006335 biolink:NamedThing DNA replication-dependent chromatin assembly The formation of nucleosomes on newly replicated DNA, coupled to strand elongation. tmpzr1t_l9r_go_relaxed.owl DNA replication-dependent nucleosome assembly https://github.com/geneontology/go-ontology/issues/22130 biological_process owl:Class GO:0000121 biolink:NamedThing glycerol-1-phosphatase activity Catalysis of the reaction: glycerol-1-phosphate + H2O = glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl glycerol 3-phosphate phosphohydrolase activity|glycerol-3-phosphate phosphatase activity|alpha-glycerophosphatase activity|alpha-glycerol phosphatase activity|glycerol-1-phosphate phosphohydrolase activity|glycerol 3-phosphatase activity MetaCyc:GLYCEROL-1-PHOSPHATASE-RXN|EC:3.1.3.21|RHEA:11476 molecular_function owl:Class GO:0071564 biolink:NamedThing npBAF complex A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T03:33:42Z cellular_component owl:Class GO:0018000 biolink:NamedThing N-terminal peptidyl-tyrosine acetylation The acetylation of the N-terminal tyrosine of proteins to form the derivative N-acetyl-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0053 biological_process owl:Class GO:1905222 biolink:NamedThing atrioventricular canal morphogenesis The developmental process by which an atrioventricular canal is generated and organized. tmpzr1t_l9r_go_relaxed.owl AVC morphogenesis|ependymal canal morphogenesis|atrial canal morphogenesis|AV canal morphogenesis|canalis atrioventricularis morphogenesis|atrio-ventricular canal morphogenesis rl 2016-06-07T09:09:51Z biological_process owl:Class GO:0043715 biolink:NamedThing 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity Catalysis of the reaction: 2,3-diketo-5-methylthiopentyl-1-phosphate = H+ + 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate. 2,3-diketo-5-methylthiopentyl-1-phosphate is also known as DK-MTP-1-P, and 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate as HK-MTPenyl-1-P. tmpzr1t_l9r_go_relaxed.owl E-1|mtnW|MasA|DK-MTP-1-P enolase activity RHEA:18769|MetaCyc:R82-RXN|EC:5.3.2.5 This function is part of the process of methionine salvage. molecular_function owl:Class GO:0044383 biolink:NamedThing host chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information, occurring within a host cell. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-13T03:58:38Z cellular_component owl:Class GO:0051991 biolink:NamedThing UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity Catalysis of the reaction: N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:NACGLCTRANS-RXN|EC:2.4.1.227|RHEA:31227 Note that EC classifies 'UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity ; GO:0051991' and 'undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity ; GO:0050511' under the same EC number, EC:2.4.1.227. ai 2010-07-06T11:53:19Z molecular_function owl:Class GO:1904969 biolink:NamedThing slow muscle cell migration The orderly movement of a slow muscle cell from one site to another. tmpzr1t_l9r_go_relaxed.owl slow-twitch muscle cell migration The directional migration of a slow muscle cell from one site to another within the embryo. ymb 2016-02-16T21:20:11Z biological_process owl:Class GO:0001519 biolink:NamedThing peptide amidation The posttranslational conversion of C-terminal glycine-extended peptides to C-terminal alpha-amidated peptides. Occurs to over half of all peptide hormones to give bioactive peptides. This is a two step process catalyzed by a peptidyl-glycine alpha-hydroxylating monooxygenase and a peptidyl-alpha-hydroxyglycine alpha-amidating lyase. In some organisms, this process is catalyzed by two separate enzymes, whereas in higher organisms, one polypeptide catalyzes both reactions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031803 biolink:NamedThing type 6 metabotropic glutamate receptor binding Binding to a type 6 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 6 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0044099 biolink:NamedThing polar tube A highly specialized structure unique to microsporidia that is required for host cell invasion. In the spore, the polar tube is connected at the anterior end, and then coils around the sporoplasm. Upon appropriate environmental stimulation, the polar tube rapidly discharges out of the spore, pierces a cell membrane and serves as a conduit for sporoplasm passage into the new host cell. tmpzr1t_l9r_go_relaxed.owl jl 2009-06-09T03:12:32Z cellular_component owl:Class GO:0038039 biolink:NamedThing G protein-coupled receptor heterodimeric complex A protein complex that contains two G protein-coupled receptors (GPCRs) of different subtypes. Formation of a GPCR heterodimer may alter the functional property of the GPCR. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor heterodimeric complex|GPCR heterodimer|G-protein coupled receptor heterodimer bf 2011-11-02T04:44:20Z cellular_component owl:Class GO:0019668 biolink:NamedThing anaerobic catabolism of pairs of amino acids The anaerobic chemical reactions and pathways resulting in the breakdown of amino acids; in these reactions, one amino acid is oxidised (acts as an electron donor) and a different amino acid is reduced (acts as an electron acceptor); oxidation of the electron-donating amino acid yields energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl cofermentation of pairs of amino acids|Stickland reaction biological_process owl:Class GO:0018719 biolink:NamedThing 6-aminohexanoate transaminase activity Catalysis of the reaction: 6-aminohexanoate + alpha-ketoglutarate = glutamate + 6-oxohexanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0449|MetaCyc:R562-RXN molecular_function owl:Class GO:0016691 biolink:NamedThing chloride peroxidase activity Catalysis of the reaction: 2 R-H + 2 chloride + hydrogen peroxide = 2 R-Cl + 2 H2O. tmpzr1t_l9r_go_relaxed.owl flavin-heme chloroperoxidase activity|flavin-haem chloroperoxidase activity|cofactor-free chloroperoxidase activity|chloroperoxidase activity|vanadium chloroperoxidase activity|heme chloroperoxidase activity|haem chloroperoxidase activity|chloride:hydrogen-peroxide oxidoreductase EC:1.11.1.10|MetaCyc:CHLORIDE-PEROXIDASE-RXN GO:0016956|GO:0016955|GO:0016958|GO:0016957 molecular_function owl:Class GO:0017194 biolink:NamedThing N-terminal peptidyl-isoleucine acetylation The acetylation of the N-terminal isoleucine of proteins to form the derivative N-acetyl-L-isoleucine. The occurrence of this modification has not been confirmed. tmpzr1t_l9r_go_relaxed.owl RESID:AA0047 biological_process owl:Class GO:0120136 biolink:NamedThing dUMP kinase activity Catalysis of the reaction: ATP + dUMP = ADP + dUDP. tmpzr1t_l9r_go_relaxed.owl deoxyuridine monophosphate kinase activity|ATP:dUMP phosphotransferase activity|dUMP-kinase activity RHEA:30655 krc 2018-03-21T21:16:06Z molecular_function owl:Class GO:2001142 biolink:NamedThing nicotinate transport The directed movement of a nicotinateacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl tb 2011-10-18T05:09:50Z biological_process owl:Class GO:0033834 biolink:NamedThing kaempferol 3-O-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + kaempferol = UDP + kaempferol 3-O-beta-D-galactoside. tmpzr1t_l9r_go_relaxed.owl F3GalTase activity|UDP-galactose:kaempferol 3-O-beta-D-galactosyltransferase activity EC:2.4.1.234|MetaCyc:2.4.1.234-RXN|RHEA:15709 molecular_function owl:Class GO:0018710 biolink:NamedThing acetone carboxylase activity Catalysis of the reaction: acetone + ATP + CO(2) + 2 H(2)O = acetoacetate + AMP + 4 H(+) + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl acetone:carbon-dioxide ligase (AMP-forming) KEGG_REACTION:R05735|MetaCyc:6.4.1.6-RXN|EC:6.4.1.6|RHEA:18385 molecular_function owl:Class GO:0098595 biolink:NamedThing perivitelline space The space between the membrane of an oocyte and a surrounding membranous structure (zona pellucida or perivitelline membrane). tmpzr1t_l9r_go_relaxed.owl dos 2014-04-08T16:07:31Z cellular_component owl:Class GO:0035877 biolink:NamedThing death effector domain binding Binding to a DED domain (death effector domain) of a protein, a homotypic protein interaction module composed of a bundle of six alpha-helices that is related in structure to the death domain (DD). tmpzr1t_l9r_go_relaxed.owl DED binding For binding to the death domain, consider instead the term 'death domain binding ; GO:0070513'. bf 2011-05-31T09:40:46Z molecular_function owl:Class GO:0003374 biolink:NamedThing dynamin family protein polymerization involved in mitochondrial fission The process of creating dynamin protein family polymers, compounds composed of a large number of dynamin family monomers around a lipid tube of a dividing mitochondrion. Dynamin polymers form around lipid tubes and contribute to membrane fission. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T05:39:52Z biological_process owl:Class GO:0090717 biolink:NamedThing adaptive immune memory response involving T cells and B cells An immune response mediated by reactivated memory T cells and B cells and directed against a previously encountered antigen, being quicker and quantitatively better compared with the primary response. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:35:19Z biological_process owl:Class GO:0033943 biolink:NamedThing galactan 1,3-beta-galactosidase activity Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in (1->3)-beta-D-galactopyranans. tmpzr1t_l9r_go_relaxed.owl galactan (1,3)-beta-D-galactosidase activity|galactan (1->3)-beta-D-galactosidase activity MetaCyc:3.2.1.145-RXN|EC:3.2.1.145 molecular_function owl:Class GO:0004803 biolink:NamedThing transposase activity Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element. tmpzr1t_l9r_go_relaxed.owl P-element encoded transposase activity GO:0004804 molecular_function owl:Class GO:0044809 biolink:NamedThing chemokine (C-C motif) ligand 17 production The appearance of chemokine (C-C motif) ligand 17 (CCL17) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CCL17 production|thymus and activation regulated chemokine production|TARC production jl 2013-09-11T12:21:31Z biological_process owl:Class GO:0071873 biolink:NamedThing response to norepinephrine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a norepinephrine stimulus. Norepinephrine is a catecholamine that has the formula C8H11NO3; it acts as a hormone, and as a neurotransmitter in most of the sympathetic nervous system. tmpzr1t_l9r_go_relaxed.owl response to norepinephrine stimulus|response to noradrenaline stimulus Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. mah 2010-09-13T03:31:53Z biological_process owl:Class GO:0060816 biolink:NamedThing random inactivation of X chromosome Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on either the paternal or maternal X-chromosome in the XX sex. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-11T10:47:30Z biological_process owl:Class GO:0006382 biolink:NamedThing adenosine to inosine editing The conversion of an adenosine residue to inosine in an RNA molecule by deamination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047968 biolink:NamedThing glyoxylate dehydrogenase (acylating) activity Catalysis of the reaction: CoA + glyoxylate + NADP(+) = H(+) + NADPH + oxalyl-CoA. tmpzr1t_l9r_go_relaxed.owl glyoxylate:NADP+ oxidoreductase (CoA-oxalylating) EC:1.2.1.17|MetaCyc:GLYOXYLATE-DEHYDROGENASE-ACYLATING-RXN|KEGG_REACTION:R00468|RHEA:21024 molecular_function owl:Class GO:0047172 biolink:NamedThing shikimate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: shikimate + coumaroyl-CoA = 4-coumaroylshikimate + CoA. tmpzr1t_l9r_go_relaxed.owl shikimate hydroxycinnamoyltransferase activity|4-coumaroyl-CoA:shikimate O-(hydroxycinnamoyl)transferase activity EC:2.3.1.133|MetaCyc:2.3.1.133-RXN|RHEA:12124 molecular_function owl:Class GO:0140306 biolink:NamedThing lipoprotein releasing activity The activity of recognizing mature outer membrane lipoproteins in the inner membrane and releasing from the inner membrane so that they can be transported across the periplasmic space to their target location, the outer membrane. This function exists in diderm bacteria, mediated by the LolCDE complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17058 pg 2019-03-22T14:25:43Z molecular_function owl:Class GO:0043562 biolink:NamedThing cellular response to nitrogen levels Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019781 biolink:NamedThing NEDD8 activating enzyme activity Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade. tmpzr1t_l9r_go_relaxed.owl RUB1 activating enzyme activity https://github.com/geneontology/go-ontology/issues/22387 EC:6.2.1.64 GO:0019944 molecular_function owl:Class GO:0003721 biolink:NamedThing telomerase RNA reverse transcriptase activity Catalysis of the extension of the 3' end of a DNA strand by one deoxynucleotide at a time. Cannot initiate a chain de novo; uses the RNA subunit of the telomerase enzyme complex as its template. tmpzr1t_l9r_go_relaxed.owl telomerase, catalyst molecular_function owl:Class GO:0102164 biolink:NamedThing 2-heptyl-3-hydroxy-4(1H)-quinolone synthase activity Catalysis of the reaction: 2-heptyl-4-quinolone + NADH + O2 + H+ <=> 2-heptyl-3-hydroxy-4-quinolone + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.182|MetaCyc:RXN-11849|RHEA:37871 molecular_function owl:Class GO:2001092 biolink:NamedThing arabinotriose transport The directed movement of an arabinotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T01:59:36Z biological_process owl:Class GO:0008823 biolink:NamedThing cupric reductase activity Catalysis of the reaction: Cu+ + NAD+ + H+ = Cu2+ + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R170-RXN|EC:1.16.1.- molecular_function owl:Class GO:0072651 biolink:NamedThing interferon-tau production The appearance of interferon-tau due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-tau production|IFNT production|interferon-tau secretion|IFN-tau secretion Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072652 biological_process owl:Class GO:0033790 biolink:NamedThing hydroxymethylfurfural reductase activity Catalysis of the reaction: 5-hydroxymethylfurfural + NAD(P)H + H+ = 2,5-bis-hydroxymethylfuran + NAD(P)+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004588 biolink:NamedThing orotate phosphoribosyltransferase activity Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl orotidine-5'-phosphate pyrophosphorylase activity|orotidine 5'-monophosphate pyrophosphorylase activity|orotidylate phosphoribosyltransferase activity|orotidylate pyrophosphorylase activity|orotidylic acid phosphorylase activity|orotic acid phosphoribosyltransferase activity|orotidylic acid pyrophosphorylase activity|orotidine monophosphate pyrophosphorylase activity|OPRTase activity|orotidylic phosphorylase activity|orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase activity|orotate phosphoribosyl pyrophosphate transferase activity|orotidine-5'-phosphate diphosphorylase activity|orotidine phosphoribosyltransferase activity|OPRT activity|orotidylic pyrophosphorylase activity Reactome:R-HSA-73567|EC:2.4.2.10|MetaCyc:OROPRIBTRANS-RXN|RHEA:10380 molecular_function owl:Class GO:0034480 biolink:NamedThing phosphatidylcholine phospholipase C activity Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate. tmpzr1t_l9r_go_relaxed.owl heat-labile hemolysin|phospholipase C, acting on phosphatidylcholine|Clostridium welchii alpha-toxin activity|Clostridium oedematiens beta- and gamma-toxins activity|lipophosphodiesterase I activity|alpha-toxin|phosphatidylcholine cholinephosphohydrolase activity RHEA:10604|MetaCyc:PHOSPHOLIPASE-C-RXN|EC:3.1.4.3 molecular_function owl:Class GO:0044606 biolink:NamedThing phosphocholine hydrolase activity Catalysis of the reaction: protein-serine-choline phosphate + H2O = protein-serine + choline phosphate. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-24T04:46:44Z molecular_function owl:Class GO:0034609 biolink:NamedThing spicule insertion Insertion of the male copulatory spicules into the hermaphrodite. Spicule insertion behavior initiates when the male cloaca contacts the vulva. During most mating encounters, the spicule tips will prod the vulva continuously until they partially penetrate, which then causes the protractors to contract completely so that the spicules extend through the vulva. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0017184 biolink:NamedThing peptidyl-diphthamide catabolic process The chemical reactions and pathways resulting in the breakdown of peptidyl-diphthamide, a modified histidine residue. tmpzr1t_l9r_go_relaxed.owl peptidyl-diphthamide degradation|peptidyl-diphthamide catabolism|peptidyl-diphthamide breakdown biological_process owl:Class GO:0006426 biolink:NamedThing glycyl-tRNA aminoacylation The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. The glycyll-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a glycine-accepting tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071131 biolink:NamedThing alphaV-beta3 integrin-laminin alpha-4 complex A protein complex that consists of an alphaV-beta3 integrin complex bound to laminin alpha-4. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-LAMA4 complex mah 2009-11-13T02:26:11Z cellular_component owl:Class GO:1905390 biolink:NamedThing cellular response to leukotriene B4 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukotriene B4 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to LTB4 sl 2016-08-18T16:37:31Z biological_process owl:Class GO:0090460 biolink:NamedThing threonine homeostasis Any process involved in the maintenance of an internal steady state of threonine within an organism or cell. tmpzr1t_l9r_go_relaxed.owl tb 2012-09-24T14:22:02Z biological_process owl:Class GO:0032957 biolink:NamedThing inositol trisphosphate metabolic process The chemical reactions and pathways involving myo-inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. tmpzr1t_l9r_go_relaxed.owl IP3 metabolism|myo-inositol trisphosphate metabolic process|inositol trisphosphate metabolism|IP3 metabolic process biological_process owl:Class GO:0016621 biolink:NamedThing cinnamoyl-CoA reductase activity Catalysis of the reaction: cinnamaldehyde + CoA + NADP+ = cinnamoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl feruloyl-CoA reductase activity|cinnamoyl-CoA:NADPH reductase activity|ferulyl-CoA reductase activity|cinnamoyl CoA reductase activity|feruloyl coenzyme A reductase activity|cinnamoyl-coenzyme A reductase activity|cinnamaldehyde:NADP+ oxidoreductase (CoA-cinnamoylating)|p-hydroxycinnamoyl coenzyme A reductase activity MetaCyc:CINNAMOYL-COA-REDUCTASE-RXN|RHEA:10620|EC:1.2.1.44 molecular_function owl:Class GO:0018603 biolink:NamedThing nitrobenzene 1,2-dioxygenase activity Catalysis of the reaction: nitrobenzene + NADH + O2 = NAD+ + nitrite + catechol. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0306 molecular_function owl:Class GO:0070178 biolink:NamedThing D-serine metabolic process The chemical reactions and pathways involving D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid. tmpzr1t_l9r_go_relaxed.owl D-serine metabolism biological_process owl:Class GO:0034586 biolink:NamedThing 21U-RNA catabolic process The chemical reactions and pathways resulting in the breakdown of 21U-RNAs, a class of single-stranded RNA molecules of about 21 nucleotides in length characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome. tmpzr1t_l9r_go_relaxed.owl 21U-RNA breakdown|21U-RNA degradation|21U-RNA catabolism biological_process owl:Class GO:0102176 biolink:NamedThing cycloeucalenone reductase activity Catalysis of the reaction: cycloeucalenone + NADPH + H+ <=> cycloeucalenol + NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.270|MetaCyc:RXN-11929 molecular_function owl:Class GO:1990970 biolink:NamedThing trans-activation response element binding Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. tmpzr1t_l9r_go_relaxed.owl TAR binding bf 2016-06-21T12:23:00Z molecular_function owl:Class GO:0008109 biolink:NamedThing N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,6-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R. tmpzr1t_l9r_go_relaxed.owl N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase activity|galbeta1->4GlcNAc-R beta1->6 N-acetylglucosaminyltransferase activity|N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:beta-D-galactosyl-1,4-N-acetyl-D-glucosaminide beta-1,6-N-acetyl-D-glucosaminyltransferase activity|uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->6-acetylglucosaminyltransferase|UDP-GlcNAc:Gal-R, beta-D-6-N-acetylglucosaminyltransferase activity RHEA:17413|EC:2.4.1.150|MetaCyc:2.4.1.150-RXN molecular_function owl:Class GO:0043989 biolink:NamedThing histone H4-S1 phosphorylation The modification of histone H4 by the addition of an phosphate group to a serine residue at position 1 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H4 phosphorylation at S1|histone H4S1 phosphorylation biological_process owl:Class GO:0014025 biolink:NamedThing neural keel formation The formation of a thickened region of the neurectoderm that is roughly triangular in cross section. The neural keel develops from the neural plate and develops into the neural rod. Neural keel formation occurs during primary neurulation in teleosts. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045095 biolink:NamedThing keratin filament A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins. tmpzr1t_l9r_go_relaxed.owl basic/neutral keratin|acidic keratin cellular_component owl:Class GO:0022417 biolink:NamedThing protein maturation by protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that results in the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018942 biolink:NamedThing organometal metabolic process The chemical reactions and pathways involving organometals, any metal-containing organic compound, especially one in which the metal atom is linked directly to one of more carbon atoms. tmpzr1t_l9r_go_relaxed.owl organometal metabolism biological_process owl:Class GO:0102828 biolink:NamedThing stachyose galactinol:verbascose galactosyltransferase activity Catalysis of the reaction: stachyose + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> verbascose + myo-inositol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8284 molecular_function owl:Class GO:0050360 biolink:NamedThing tryptophan 2'-dioxygenase activity Catalysis of the reaction: L-tryptophan + O2 = 3-indoleglycolaldehyde + CO2 + NH3. tmpzr1t_l9r_go_relaxed.owl L-tryptophan:oxygen 2'-oxidoreductase (side-chain-cleaving)|indolyl-3-alkan alpha-hydroxylase activity|TSO I|tryptophan side chain oxidase II|tryptophan side chain oxidase type I|TSO activity|tryptophan side chain oxidase activity|tryptophan side-chain alpha,beta-oxidase activity|tryptophan side-chain oxidase activity|TSO II|indole-3-alkane alpha-hydroxylase activity MetaCyc:TRYPTOPHAN-2-DIOXYGENASE-RXN|RHEA:22620|EC:1.13.99.3 molecular_function owl:Class GO:0034626 biolink:NamedThing fatty acid elongation, polyunsaturated fatty acid Elongation of a fatty acid chain into which two or more C-C double bonds have been introduced. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904599 biolink:NamedThing advanced glycation end-product binding Binding to advanced glycation end-product. tmpzr1t_l9r_go_relaxed.owl krc 2015-08-25T23:39:32Z molecular_function owl:Class GO:0052881 biolink:NamedThing 4-hydroxyphenylacetate 3-monooxygenase activity Catalysis of the reaction: (4-hydroxyphenyl)acetate + FADH(2) + O(2) = 3,4-dihydroxyphenylacetate + FAD + H(+) + H(2)O. tmpzr1t_l9r_go_relaxed.owl p-hydroxyphenylacetate hydroxylase activity|p-hydroxyphenylacetate 3-hydroxylase activity|p-hydroxyphenylacetate hydroxylase (FAD) activity|4-hydroxyphenylacetic acid-3-hydroxylase activity|p-hydroxyphenylacetate 3-hydroxylase (FAD) activity|4-hydroxyphenylacetate,FADH:oxygen oxidoreductase (3-hydroxylating) activity|4 HPA 3-hydroxylase activity EC:1.14.14.9|UM-BBD_reactionID:r0301|MetaCyc:RXN-8505|RHEA:30595 molecular_function owl:Class GO:0102896 biolink:NamedThing colnelenate synthase activity Catalysis of the reaction: (10E,12Z,15Z)-9-hydroperoxyoctadeca-10,12,15-trienoate <=> colnelenate + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8498|RHEA:28178 molecular_function owl:Class GO:0097266 biolink:NamedThing phenylacetyl-CoA 1,2-epoxidase activity Catalysis of the reaction: phenylacetyl-CoA + H(+) + NADPH + O2 = 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA + H2O + NADP(+). tmpzr1t_l9r_go_relaxed.owl phenylacetyl-CoA epoxidase activity|ring 1,2-phenylacetyl-CoA epoxidase activity|phenylacetyl-CoA monooxygenase activity RHEA:32171|EC:1.14.13.149|KEGG_REACTION:R09838 pr 2012-03-13T09:22:47Z molecular_function owl:Class GO:0015716 biolink:NamedThing organic phosphonate transport The directed movement of phosphonates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A phosphonate is any salt, anion, or ester of phosphonic acid (HPO(OH)2). tmpzr1t_l9r_go_relaxed.owl alkylphosphonate transport https://github.com/geneontology/go-ontology/issues/17164 GO:0042916 biological_process owl:Class GO:0046517 biolink:NamedThing octamethylcyclotetrasiloxane catabolic process The chemical reactions and pathways resulting in the breakdown of octamethylcyclotetrasiloxane, a cyclic silicone-oxygen ring compound with two methyl groups attached to each silicone atom. tmpzr1t_l9r_go_relaxed.owl octamethylcyclotetrasiloxane catabolism|octamethylcyclotetrasiloxane degradation|octamethylcyclotetrasiloxane breakdown biological_process owl:Class GO:0047861 biolink:NamedThing diiodotyrosine transaminase activity Catalysis of the reaction: 2-oxoglutarate + 3,5-diiodo-L-tyrosine = 3-(3,5-diiodo-4-hydroxyphenyl)pyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 3,5-diiodo-L-tyrosine:2-oxoglutarate aminotransferase activity|diiodotyrosine aminotransferase activity|halogenated tyrosine transaminase activity|halogenated tyrosine aminotransferase activity MetaCyc:DIIODOTYROSINE-AMINOTRANSFERASE-RXN|RHEA:19781|KEGG_REACTION:R03207|EC:2.6.1.24 molecular_function owl:Class GO:1990294 biolink:NamedThing peptidyl-threonine trans-autophosphorylation The phosphorylation of a peptidyl-threonine to form peptidyl-O-phospho-L-threonine on an identical protein. For example, phosphorylation by the other kinase within a homodimer. tmpzr1t_l9r_go_relaxed.owl al 2014-02-05T12:42:46Z biological_process owl:Class GO:1901356 biolink:NamedThing beta-D-galactofuranose metabolic process The chemical reactions and pathways involving beta-D-galactofuranose. tmpzr1t_l9r_go_relaxed.owl beta-D-galactofuranose metabolism di 2012-09-13T22:18:20Z biological_process owl:Class GO:0097121 biolink:NamedThing cyclin A1-CDK1 complex A protein complex consisting of cyclin A1 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:41:25Z cellular_component owl:Class GO:0050287 biolink:NamedThing sorbose 5-dehydrogenase (NADP+) activity Catalysis of the reaction: L-sorbose + NADP(+) = 5-dehydro-D-fructose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-sorbose:NADP+ 5-oxidoreductase activity|5-keto-D-fructose reductase activity|5-ketofructose reductase activity|sorbose (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|reduced nicotinamide adenine dinucleotide phosphate-linked reductase activity RHEA:15001|EC:1.1.1.123|KEGG_REACTION:R01694|MetaCyc:SORBOSE-5-DEHYDROGENASE-NADP+-RXN molecular_function owl:Class GO:0018424 biolink:NamedThing peptidyl-glutamic acid poly-ADP-ribosylation This modification produces peptidyl-glutamic acid poly-ADP-ribose found in a number of nuclear proteins under certain conditions including the repair of single strand DNA breaks. The activated form of the generating enzyme poly(ADP-ribose) polymerase is itself modified in this way. tmpzr1t_l9r_go_relaxed.owl RESID:AA0295 biological_process owl:Class GO:0019373 biolink:NamedThing epoxygenase P450 pathway The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008511 biolink:NamedThing sodium:potassium:chloride symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + K+(out) + Cl-(out) = Na+(in) + K+(in) + Cl-(in). tmpzr1t_l9r_go_relaxed.owl sodium/potassium/chloride symporter activity Reactome:R-HSA-426086|Reactome:R-HSA-5623588 molecular_function owl:Class GO:0072732 biolink:NamedThing cellular response to calcium ion starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of calcium ions. tmpzr1t_l9r_go_relaxed.owl cellular response to calcium starvation mah 2012-07-06T02:42:26Z biological_process owl:Class GO:0047653 biolink:NamedThing allantoin racemase activity Catalysis of the reaction: (S)-(+)-allantoin = (R)-(-)-allantoin. tmpzr1t_l9r_go_relaxed.owl EC:5.1.99.3|RHEA:10804|MetaCyc:ALLANTOIN-RACEMASE-RXN|KEGG_REACTION:R03925 molecular_function owl:Class GO:0019712 biolink:NamedThing peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from glutamic acid The methyl esterification of peptidyl-glutamic acid. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-glutamic acid 5-methyl ester anabolism from glutamic acid|peptidyl-L-glutamic acid 5-methyl ester synthesis from glutamic acid|peptidyl-L-glutamic acid 5-methyl ester formation from glutamic acid RESID:AA0072 biological_process owl:Class GO:0047265 biolink:NamedThing poly(glycerol-phosphate) alpha-glucosyltransferase activity Catalysis of the reaction: poly(glycerol phosphate) + UDP-D-glucose = alpha-D-glucosylpoly(glycerol phosphate) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:poly(glycerol-phosphate) alpha-D-glucosyltransferase activity|UDPglucose:poly(glycerol-phosphate) alpha-D-glucosyltransferase activity|UDP glucose-poly(glycerol-phosphate) alpha-glucosyltransferase activity|uridine diphosphoglucose-poly(glycerol-phosphate) alpha-glucosyltransferase activity EC:2.4.1.52|MetaCyc:2.4.1.52-RXN|RHEA:15845 molecular_function owl:Class GO:0047234 biolink:NamedThing raffinose-raffinose alpha-galactotransferase activity Catalysis of the reaction: 2 raffinose = sucrose + 1F-alpha-D-galactosylraffinose. tmpzr1t_l9r_go_relaxed.owl raffinose (raffinose donor) galactosyltransferase activity|raffinose-raffinose a-galactosyltransferase activity|raffinose:raffinose alpha-D-galactosyltransferase activity|raffinose:raffinose alpha-galactosyltransferase activity|raffinose-raffinose alpha-galactosyltransferase activity MetaCyc:2.4.1.166-RXN|EC:2.4.1.166|RHEA:14125 molecular_function owl:Class GO:0008874 biolink:NamedThing gluconate 5-dehydrogenase activity Catalysis of the reaction: D-gluconate + NADP+ = 5-dehydro-D-gluconate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 5-keto-D-gluconate reductase|5-ketogluconate reductase activity|D-gluconate:NAD(P)+ 5-oxidoreductase|5-ketogluconate 5-reductase activity|5-keto-D-gluconate 5-reductase activity MetaCyc:GLUCONATE-5-DEHYDROGENASE-RXN|EC:1.1.1.69 molecular_function owl:Class GO:0018477 biolink:NamedThing benzaldehyde dehydrogenase (NADP+) activity Catalysis of the reaction: benzaldehyde + NADP+ + H2O = benzoate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl benzaldehyde:NADP+ oxidoreductase|NADP-linked benzaldehyde dehydrogenase RHEA:21660|EC:1.2.1.7|MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN|UM-BBD_enzymeID:e0079 molecular_function owl:Class GO:0003726 biolink:NamedThing double-stranded RNA adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule. tmpzr1t_l9r_go_relaxed.owl double-stranded RNA specific editase activity Reactome:R-HSA-77615|Reactome:R-HSA-77614 GO:0003971 molecular_function owl:Class GO:0071176 biolink:NamedThing MAML2-RBP-Jkappa-ICN2 complex A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML2-RBP-Jkappa-Notch2 complex mah 2009-11-23T02:42:24Z cellular_component owl:Class GO:0019549 biolink:NamedThing glutamate catabolic process to succinate via succinate semialdehyde The chemical reactions and pathways resulting in the breakdown of glutamate into succinate, that includes the conversion of 4-aminobutyrate to succinate semialdehyde by the pyruvate-dependent gamma aminobutyrate (GABA) transaminase. tmpzr1t_l9r_go_relaxed.owl glutamate degradation to succinate|glutamate catabolic process to succinate via pyruvate-dependent GABA-transaminase activity|glutamate breakdown to succinate MetaCyc:PWY-4321 While mammals only have 2-oxoglutarate-dependent GABA-transaminase, both 2-oxoglutarate-dependent and pyruvate-dependent GABA-transaminase activities have been detected in plants. biological_process owl:Class GO:0089717 biolink:NamedThing spanning component of membrane The component of a membrane consisting of gene products and protein complexes that have some part that spans both leaflets of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070558 biolink:NamedThing alphaM-beta2 integrin-CD63 complex A protein complex that consists of an alphaM-beta2 integrin complex bound to membrane protein CD63, a member of the tetraspan family. tmpzr1t_l9r_go_relaxed.owl ITGAM-ITGB2-CD63 complex cellular_component owl:Class GO:0004098 biolink:NamedThing cerebroside-sulfatase activity Catalysis of the reaction: a cerebroside 3-sulfate + H2O = a cerebroside + sulfate. tmpzr1t_l9r_go_relaxed.owl cerebroside-sulphatase activity|arylsulfatase A activity|cerebroside-3-sulfate 3-sulfohydrolase activity|cerebroside sulfate sulfatase activity RHEA:21300|EC:3.1.6.8|Reactome:R-HSA-1606807|MetaCyc:CEREBROSIDE-SULFATASE-RXN molecular_function owl:Class GO:0070380 biolink:NamedThing high mobility group box 1 receptor activity Combining with high mobility group box 1 (HMBGB1) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl HMGB1 receptor activity molecular_function owl:Class GO:0015109 biolink:NamedThing chromate transmembrane transporter activity Enables the transfer of chromate from one side of a membrane to the other. Chromate is the anion of chromic acid, H2CrO4 (aq) or CrO3. tmpzr1t_l9r_go_relaxed.owl RHEA:32819 molecular_function owl:Class GO:0046780 biolink:NamedThing suppression by virus of host mRNA splicing Any viral process that inhibits the splicing of host mRNA, thus reducing host protein production. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host mRNA splicing|viral inhibition of host mRNA splicing|suppression by virus of host splicing factor activity|viral dispersion of host splicing factors GO:0046781 biological_process owl:Class GO:0102636 biolink:NamedThing 3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine gamma-glutamylcyclotransferase activity Catalysis of the reaction: 3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine <=> 3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine + 2 5-oxo-L-prolinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15681 molecular_function owl:Class GO:0102719 biolink:NamedThing S-adenosyl-L-methionine:eugenol-O-methyltransferase activity Catalysis of the reaction: eugenol + S-adenosyl-L-methionine = H+ + O-methyleugenol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6741|EC:2.1.1.146 molecular_function owl:Class GO:0005955 biolink:NamedThing calcineurin complex A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin. tmpzr1t_l9r_go_relaxed.owl protein phosphatase type 2B complex|calcium-dependent protein serine/threonine phosphatase complex cellular_component owl:Class GO:0033296 biolink:NamedThing rhamnose binding Binding to the D- or L-enantiomer of rhamnose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019382 biolink:NamedThing carbon tetrachloride catabolic process The chemical reactions and pathways resulting in the breakdown of carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations. It is also used as grain fumigant and a chemical intermediate in the production of refrigerants. tmpzr1t_l9r_go_relaxed.owl carbon tetrachloride breakdown|carbon tetrachloride degradation|carbon tetrachloride catabolism biological_process owl:Class GO:0046480 biolink:NamedThing galactolipid galactosyltransferase activity Catalysis of the reaction: 2 mono-beta-D-galactosyldiacylglycerol = alpha-D-galactosyl-beta-D-galactosyldiacylglycerol + 1,2-diacylglycerol. tmpzr1t_l9r_go_relaxed.owl galactolipid-galactolipid galactosyltransferase activity|digalactosyldiacylglycerol synthase activity|interlipid galactosyltransferase activity|DGDG synthase activity|galactolipid:galactolipid galactosyltransferase activity|3-(beta-D-galactosyl)-1,2-diacyl-sn-glycerol:mono-3-(beta-D-galactosyl)-1,2-diacyl-sn-glycerol beta-D-galactosyltransferase activity|GGGT activity RHEA:15921|EC:2.4.1.184|MetaCyc:RXN-1226 molecular_function owl:Class GO:0106059 biolink:NamedThing tRNA (cytidine 56-2'-O)-methyltransferase Catalysis of the reaction: S-adenosyl-L-methionine + cytidine56 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylcytidine56 in tRNA. tmpzr1t_l9r_go_relaxed.owl hjd 2017-10-05T19:02:22Z molecular_function owl:Class GO:0080019 biolink:NamedThing fatty-acyl-CoA reductase (alcohol-forming) activity Catalysis of the reaction: a very long chain fatty acyl-CoA + NADPH + H+ = a very long chain primary alcohol + NADP+ + CoA. tmpzr1t_l9r_go_relaxed.owl fatty acyl CoA reductase (alcohol-forming) activity|fatty acyl-CoA reductase (alcohol-forming) activity molecular_function owl:Class GO:0047580 biolink:NamedThing 4-hydroxyproline epimerase activity Catalysis of the reaction: trans-4-hydroxy-L-proline = cis-4-hydroxy-D-proline. tmpzr1t_l9r_go_relaxed.owl L-hydroxyproline epimerase activity|hydroxyproline 2-epimerase activity|hydroxyproline epimerase activity|4-hydroxyproline 2-epimerase activity KEGG_REACTION:R03296|RHEA:21152|MetaCyc:4-HYDROXYPROLINE-EPIMERASE-RXN|EC:5.1.1.8 molecular_function owl:Class GO:0050201 biolink:NamedThing fucokinase activity Catalysis of the reaction: L-fucose + ATP = beta-L-fucose 1-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:beta-L-fucose 1-phosphotransferase activity|L-fucose kinase activity|L-fucokinase activity|fucose kinase activity|ATP:6-deoxy-L-galactose 1-phosphotransferase activity|fucokinase (phosphorylating) activity EC:2.7.1.52|RHEA:13241|MetaCyc:FUCOKINASE-RXN|KEGG_REACTION:R03161|Reactome:R-HSA-6787540 molecular_function owl:Class GO:0016617 biolink:NamedThing 4-oxoproline reductase activity Catalysis of the reaction: 4-hydroxy-L-proline + NAD+ = 4-oxoproline + NADH + H+. tmpzr1t_l9r_go_relaxed.owl hydroxy-L-proline oxidase activity|4-hydroxy-L-proline:NAD+ oxidoreductase activity|hydroxyproline oxidase activity EC:1.1.1.104|MetaCyc:4-OXOPROLINE-REDUCTASE-RXN|RHEA:13601 molecular_function owl:Class GO:0102926 biolink:NamedThing solanidine glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + solanidine = H+ + gamma-chaconine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8882 molecular_function owl:Class GO:1904802 biolink:NamedThing RITS complex assembly The aggregation, arrangement and bonding together of a set of components to form a RITS complex. tmpzr1t_l9r_go_relaxed.owl RITS complex formation mah 2015-11-09T16:17:54Z biological_process owl:Class GO:0005862 biolink:NamedThing muscle thin filament tropomyosin A form of the tropomyosin dimer found associated with actin and the troponin complex in muscle thin filaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018717 biolink:NamedThing 9-phenanthrol glycosyltransferase activity Catalysis of the reaction: 9-phenanthrol + glucose = 9-phenanthryl-beta-D-glucopyranoside + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0511 molecular_function owl:Class GO:2001050 biolink:NamedThing negative regulation of tendon cell differentiation Any process that stops, prevents or reduces the frequency, rate or extent of tendon cell differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of muscle attachment cell differentiation|negative regulation of tenocyte differentiation yaf 2011-09-01T09:20:38Z biological_process owl:Class GO:0140445 biolink:NamedThing chromosome, telomeric repeat region A complex of DNA and protein that seals the end of a chromosome. The telomeric repeat DNA consists of simple tandemly repeated sequences specific for each species. Typically one strand is G-rich and the other C-rich. The G-rich strand forms a 3'-terminal overhang, the length of which varies with species. The single strand overhang is bound by a variety of proteins, including telomere capping proteins that bind to the single-stranded DNA and seal the telomeric loop. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19086 pg 2020-03-27T13:29:16Z cellular_component owl:Class GO:0060647 biolink:NamedThing mesenchymal cell condensation involved in mammary fat development The cell adhesion process in which mammary mesenchyme cells adhere to one another in the initial stages of the formation of mammary fat development. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-29T08:33:29Z biological_process owl:Class GO:0051994 biolink:NamedThing P-methyltransferase activity Catalysis of the transfer of a methyl group to the phosphorus atom of an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.- ai 2010-07-16T04:39:34Z molecular_function owl:Class GO:0014045 biolink:NamedThing establishment of endothelial blood-brain barrier Establishment of the endothelial barrier between the blood and the brain. The endothelial cells in the brain capillaries are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl establishment of endothelial BBB|establishment of endothelial blood/brain barrier biological_process owl:Class GO:0150111 biolink:NamedThing regulation of transepithelial transport Any process that modulates the frequency, rate or extent of transepithelial transport. tmpzr1t_l9r_go_relaxed.owl bc 2019-09-15T07:16:49Z biological_process owl:Class GO:0004504 biolink:NamedThing peptidylglycine monooxygenase activity Catalysis of the reaction: peptidyl-glycine + ascorbate + O2 = peptidyl(2-hydroxyglycine) + dehydroascorbate + H2O. tmpzr1t_l9r_go_relaxed.owl PAM-A|PAM-B|peptidylglycine alpha-hydroxylase activity|peptidylglycine 2-hydroxylase activity|synthase, peptide alpha-amide|peptidylglycine alpha-amidating monooxygenase activity|peptide alpha-amidating enzyme|peptide-alpha-amide synthetase activity|peptide alpha-amide synthase activity|peptidylglycine,ascorbate:oxygen oxidoreductase (2-hydroxylating)|peptidyl alpha-amidating enzyme activity|PAM activity RHEA:21452|MetaCyc:PEPTIDYLGLYCINE-MONOOXYGENASE-RXN|EC:1.14.17.3 molecular_function owl:Class GO:0140655 biolink:NamedThing mitochondrial proliferation The multiplication of mitochondria, resulting in the expansion of the number of mitochondria within a cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21537 pg 2021-06-04T10:23:02Z biological_process owl:Class GO:0047625 biolink:NamedThing adenosylmethionine cyclotransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) = S-methyl-5'-thioadenosine + homoserine lactone. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine alkyltransferase (cyclizing)|adenosyl methionine cyclotransferase activity|adenosylmethioninase activity EC:2.5.1.4|RHEA:21932|MetaCyc:ADENOSYLMETHIONINE-CYCLOTRANSFERASE-RXN|KEGG_REACTION:R00180 molecular_function owl:Class GO:1990663 biolink:NamedThing dihydroorotate dehydrogenase (fumarate) activity Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate. tmpzr1t_l9r_go_relaxed.owl EC:1.3.98.1|RHEA:30059 al 2015-02-26T15:47:30Z molecular_function owl:Class GO:0003925 biolink:NamedThing G protein activity A molecular function regulator that cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular processes. Intrinsic GTPase activity returns the G protein to its GDP-bound state. The return to the GDP-bound state can be accelerated by the action of a GTPase-activating protein (GAP). tmpzr1t_l9r_go_relaxed.owl large G-protein GTPase activity|large G-protein activity|small monomeric GTPase activity|small monomeric G protein activity|heterotrimeric G-protein GTPase activity|signaling G protein activity https://github.com/geneontology/go-ontology/issues/19082 EC:3.6.5.2|EC:3.6.5.1|MetaCyc:3.6.1.47-RXN|MetaCyc:3.6.1.46-RXN GO:0003927 molecular_function owl:Class GO:0060792 biolink:NamedThing sweat gland development The progression of the sweat gland over time, from its formation to the mature structure. Sweat glands secrete an aqueous solution that is used in thermoregulation. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-04T12:35:12Z biological_process owl:Class GO:0047261 biolink:NamedThing steroid N-acetylglucosaminyltransferase activity Catalysis of the reaction: estradiol-17alpha 3-D-glucuronoside + UDP-N-acetyl-alpha-D-glucosamine = 17alpha-(N-acetyl-D-glucosaminyl)-estradiol 3-D-glucuronoside + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:estradiol-17alpha-3-D-glucuronoside 17alpha-N-acetylglucosaminyltransferase activity|steroid acetylglucosaminyltransferase activity|hydroxy steroid acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-steroid acetylglucosaminyltransferase activity RHEA:14153|MetaCyc:2.4.1.39-RXN|EC:2.4.1.39|KEGG_REACTION:R04451 molecular_function owl:Class GO:0036236 biolink:NamedThing acyl glucuronidation The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside). tmpzr1t_l9r_go_relaxed.owl bf 2012-05-18T04:26:25Z biological_process owl:Class GO:0044334 biolink:NamedThing canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of epithelial cell to mesenchymal cell transition. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|canonical Wnt receptor signalling pathway involved in positive regulation of epithelial to mesenchymal transition|canonical Wnt-activated signaling pathway involved in positive regulation of epithelial to mesenchymal transition jl 2010-08-20T02:35:17Z biological_process owl:Class GO:0031174 biolink:NamedThing lifelong otolith mineralization The formation and growth of otoliths throughout the life of the organism. Otoliths are the large extracellular ear-stones of the fish inner ear, produced by precipitation of specific crystal forms of calcium carbonate on organic matrices. The otolith enlarges throughout the life of the fish, as layers of calcium carbonate are added. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015625 biolink:NamedThing ABC-type ferric hydroxamate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + ferric-hydroxamate(out) = ADP + phosphate + ferric-hydroxamate(in). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled iron-chelate transporter activity|ATPase-coupled ferric-hydroxamate transmembrane transporter activity|ATP-dependent iron-chelate transporter activity|iron-chelate-transporting ATPase activity|ATP-dependent ferric-hydroxamate transmembrane transporter activity|ferric-hydroxamate-transporting ATPase activity|ferric-hydroxamate ABC transporter|ferric-hydroxamate porter activity|ferric-hydroxamate transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/17164 EC:7.2.2.16|MetaCyc:ABC-11-RXN|MetaCyc:ABC-9-RXN|MetaCyc:3.6.3.34-RXN GO:0015622|GO:0015623|GO:0015409|GO:0102026 molecular_function owl:Class GO:0048028 biolink:NamedThing galacturonan binding Binding to a simple or complex galacturonan. Galacturonan is any glycan composed solely of galacturonic acid residues, a specific type of glycuronan, and a constituent of some pectins. tmpzr1t_l9r_go_relaxed.owl polygalacturonide binding molecular_function owl:Class GO:0034965 biolink:NamedThing intronic box C/D RNA processing Any process involved in the conversion of a primary box C/D type small nucleolar RNA (snoRNA) transcript that resides within, and is processed from, the intron of a pre-mRNA into a mature box C/D snoRNA. tmpzr1t_l9r_go_relaxed.owl intronic box C/D sRNA processing|intronic box C/D snoRNA processing biological_process owl:Class GO:1990530 biolink:NamedThing Cdc50p-Drs2p complex A protein complex that functions as a phospholipid-translocating P-Type ATPase. In budding yeast, this complex consists of Cdc50p and Drs2p proteins, and is involved in the trafficking of transport vesicles between the late Golgi and the early endosome. tmpzr1t_l9r_go_relaxed.owl rb 2014-11-06T01:29:31Z cellular_component owl:Class GO:1990531 biolink:NamedThing phospholipid-translocating ATPase complex A protein complex that functions as a phospholipid-translocating P-Type ATPase. tmpzr1t_l9r_go_relaxed.owl APLT complex|P4-ATPase complex|Dnf1-Lem3 complex|CDC50-DRS2 complex|DRS2-CDC50 complex|Lem3p-Dnf1p complex|Lem3-Dnf1 complex|Dnf2-Lem3 complex|DNF3-CRF1 complex|CRF1-DNF3 complex|phospholipid flippase complex|aminophospholipid translocase complex rb 2014-11-06T22:33:25Z cellular_component owl:Class GO:0033728 biolink:NamedThing divinyl chlorophyllide a 8-vinyl-reductase activity Catalysis of the reaction: chlorophyllide a + NADP+ = divinyl chlorophyllide a + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl chlorophyllide-a:NADP+ oxidoreductase activity|[4-vinyl]chlorophyllide a reductase activity|4VCR MetaCyc:RXN-5286|EC:1.3.1.75|RHEA:14449 molecular_function owl:Class GO:0004853 biolink:NamedThing uroporphyrinogen decarboxylase activity Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. tmpzr1t_l9r_go_relaxed.owl uroporphyrinogen-III carboxy-lyase (coproporphyrinogen-III-forming)|porphyrinogen decarboxylase activity|porphyrinogen carboxy-lyase activity|uroporphyrinogen-III carboxy-lyase activity|uroporphyrinogen III decarboxylase activity Reactome:R-HSA-189425|RHEA:19865|Reactome:R-HSA-190182|MetaCyc:UROGENDECARBOX-RXN|EC:4.1.1.37 molecular_function owl:Class GO:0050195 biolink:NamedThing phosphoribokinase activity Catalysis of the reaction: D-ribose 5-phosphate + ATP = D-ribose 1,5-diphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl phosphoribokinase (phosphorylating)|ATP:D-ribose-5-phosphate 1-phosphotransferase activity KEGG_REACTION:R01050|EC:2.7.1.18|MetaCyc:PHOSPHORIBOKINASE-RXN|RHEA:21216 molecular_function owl:Class GO:0102308 biolink:NamedThing erythromycin D 3''-o-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + erythromycin D <=> S-adenosyl-L-homocysteine + erythromycin B + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12924|EC:2.1.1.254|RHEA:32651 molecular_function owl:Class GO:0005964 biolink:NamedThing phosphorylase kinase complex An enzyme complex that catalyzes the phosphorylation of phosphorylase b to form phosphorylase a. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004795 biolink:NamedThing threonine synthase activity Catalysis of the reaction: O-phospho-L-homoserine + H2O = L-threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl O-phospho-L-homoserine phospho-lyase (adding water; L-threonine-forming)|threonine synthetase activity|O-phospho-L-homoserine phospho-lyase (adding water) MetaCyc:THRESYN-RXN|EC:4.2.3.1|RHEA:10840 molecular_function owl:Class GO:0000140 biolink:NamedThing acylglycerone-phosphate reductase activity Catalysis of the reaction: 1-palmitoylglycerol-3-phosphate + NADP+ = palmitoylglycerone phosphate + NADPH + H(+). tmpzr1t_l9r_go_relaxed.owl 1-acyldihydroxyacetone-phosphate reductase activity|acyldihydroxyacetone phosphate reductase activity|1-palmitoylglycerol-3-phosphate:NADP+ oxidoreductase activity|palmitoyl dihydroxyacetone phosphate reductase activity|palmitoyl-dihydroxyacetone-phosphate reductase activity|palmitoyldihydroxyacetone-phosphate reductase activity MetaCyc:ACYLGLYCERONE-PHOSPHATE-REDUCTASE-RXN|RHEA:17341|Reactome:R-HSA-75883|EC:1.1.1.101 molecular_function owl:Class GO:0062157 biolink:NamedThing mitochondrial ATP-gated potassium channel complex A protein-containing complex that is capable of the ATP-dependent diffusion of a potassium ion across the mitochondrial inner membrane. tmpzr1t_l9r_go_relaxed.owl dph 2019-09-20T16:17:05Z cellular_component owl:Class GO:0046359 biolink:NamedThing butyrate catabolic process The chemical reactions and pathways resulting in the breakdown of butyrate, the anion of butyric acid. tmpzr1t_l9r_go_relaxed.owl butyrate breakdown|butyrate catabolism|butyrate degradation|butanoic acid degradation|butanoic acid catabolism|butanoic acid breakdown|butanoic acid catabolic process GO:0043440 biological_process owl:Class GO:0055048 biolink:NamedThing anastral spindle assembly The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the absence of centrosomes. Formation is initiated by the nucleation of microtubules (MTs) in the vicinity of condensed chromatin. MTs then attach to and congress around the chromatin due to activity of microtubule motors. A bipolar spindle is formed by focusing of the terminal ends of the MT array into spindle poles by molecular motors and cross-linking proteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034662 biolink:NamedThing CFTR-NHERF-ezrin complex A protein complex that contains ezrin, Na+/H+ exchanger regulatory factor (NHERF, also called EBP50), and two copies of the cystic fibrosis transmembrane conductance regulator (CFTR). The CFTR molecules interact with NHERF via their cytoplasmic tail domains; the complex is thought to link the CFTR channel to the actin cytoskeleton and contribute to the regulation of channel activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0061744 biolink:NamedThing motor behavior The specific neuromuscular movement of a single organism in response to external or internal stimuli. tmpzr1t_l9r_go_relaxed.owl dph 2015-11-09T12:43:11Z biological_process owl:Class GO:0140091 biolink:NamedThing mBAF complex A muscle cell-specific SWI/SNF-type complex that contains eight to fourteen proteins, including both conserved (core) and nonconserved components; contains the ATPase product of either the SMARCA4/BAF190A/BRG1 gene, the mammalian ortholog of the yeast SNF2 gene, or the SMARCA2/BAF190B/BRM gene, the mammalian ortholog of the Drosophila brm (brahma) gene, or an ortholog of either of these genes, and the muscle-specific product of the DPF3/BAF45C gene or an ortholog thereof. tmpzr1t_l9r_go_relaxed.owl muscle-specific SWI/SNF complex|muscle-type SWI/SNF complex|muscle-specific BAF complex|muscle-type BAF complex pg 2017-09-05T09:20:45Z cellular_component owl:Class GO:0019926 biolink:NamedThing peptidyl-tryptophan oxidation to tryptophyl quinone The oxidation of peptidyl-tryptophan to form tryptophan-6,7-dione, otherwise known as tryptophyl quinone, which is further modified by cross-linking to either tryptophan or cysteine. tmpzr1t_l9r_go_relaxed.owl See also the biological process term 'peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone ; GO:0018069'. biological_process owl:Class GO:0000419 biolink:NamedThing RNA polymerase V complex RNA polymerase V is a multisubunit RNA polymerase complex found in the nucleus of plants and involved in accumulation of siRNAs and in DNA methylation-dependent silencing of endogenous repeated sequences. Pol V is composed of subunits that are paralogous or identical to the 12 subunits of Pol II. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The second largest subunit is also found in RNA polymerase IVa, while the largest subunit is found only in the IVa complex and contains an extended C-terminal domain (CTD) that includes multiple repeats of a 16 amino-acid consensus sequence as well as other sequences. The remainder of the complex is composed of smaller subunits. tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase IVb complex|DNA-directed RNA polymerase V complex GO:0080137 cellular_component owl:Class GO:0004395 biolink:NamedThing hexaprenyldihydroxybenzoate methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 3-hexaprenyl-4,5-dihydroxybenzoate = S-adenosyl-L-homocysteine + 3-hexaprenyl-4-hydroxy-5-methoxybenzoate. tmpzr1t_l9r_go_relaxed.owl DHHB methyltransferase activity|S-adenosyl-L-methionine:3-hexaprenyl-4,5-dihydroxylate O-methyltransferase activity|DHHB-Mt activity|dihydroxyhexaprenylbenzoate methyltransferase activity|3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase activity RHEA:14121|MetaCyc:2.1.1.114-RXN|EC:2.1.1.114 molecular_function owl:Class GO:0102898 biolink:NamedThing levopimaradienol hydroxylase activity Catalysis of the reaction: H+ + levopimaradienol + NADPH + O2 <=> levopiramadiene-diol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8517 molecular_function owl:Class GO:0062066 biolink:NamedThing PSII associated light-harvesting complex II binding Binding to a PSII associated light-harvesting complex II. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:06:01Z molecular_function owl:Class GO:0019772 biolink:NamedThing low-affinity IgG receptor activity Combining with low affinity with an immunoglobulin of an IgG isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl low affinity IgG receptor activity|low affinity Fc receptor activity molecular_function owl:Class GO:0035524 biolink:NamedThing proline transmembrane transport The directed movement of proline, pyrrolidine-2-carboxylic acid, across a membrane by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl proline membrane transport Note that this term is not intended for use in annotating lateral movement within membranes. bf 2010-05-04T04:52:46Z biological_process owl:Class GO:0046543 biolink:NamedThing development of secondary female sexual characteristics The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018150 biolink:NamedThing peptide cross-linking via 3-(3'-L-histidyl)-L-tyrosine The modification of peptidyl-histidine and peptidyl-tyrosine to form a 3-(3'-L-histidyl)-L-tyrosine protein cross-link. tmpzr1t_l9r_go_relaxed.owl RESID:AA0250 biological_process owl:Class GO:0055005 biolink:NamedThing ventricular cardiac myofibril assembly The process whose specific outcome is the progression of the ventricular cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells. tmpzr1t_l9r_go_relaxed.owl ventricular cardiac myofibril development|ventricular heart myofibril development biological_process owl:Class GO:0140638 biolink:NamedThing small ribosomal subunit processing complex A small heterodimeric protein complex that is required during early maturation of nascent 40S ribosomal subunits. The complex has endonuclease activity, it interacts with the small ribosomal subunit pre-rRNA and cleave it it to produce the mature 18S (or small ribosomal subunit) rRNA. In S. cerevisiae it is composed of Rcl1p and Bms1p. tmpzr1t_l9r_go_relaxed.owl small ribosomal subunit maturation complex https://github.com/geneontology/go-ontology/issues/15290 pg 2021-04-21T08:07:11Z cellular_component owl:Class GO:0050481 biolink:NamedThing mandelate 4-monooxygenase activity Catalysis of the reaction: (S)-mandelate + 5,6,7,8-tetrahydrobiopterin + O(2) = (S)-4-hydroxymandelate + 7,8-dihydrobiopterin + H(2)O. (S)-2-hydroxy-2-phenylacetate is also known as S-mandelate. tmpzr1t_l9r_go_relaxed.owl (S)-2-hydroxy-2-phenylacetate,tetrahydrobiopterin:oxygen oxidoreductase (4-hydroxylating)|L-mandelate 4-hydroxylase activity|mandelic acid 4-hydroxylase activity KEGG_REACTION:R03794|RHEA:21716|MetaCyc:MANDELATE-4-MONOOXYGENASE-RXN|EC:1.14.16.6 molecular_function owl:Class GO:0043135 biolink:NamedThing 5-phosphoribosyl 1-pyrophosphate pyrophosphatase activity Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + H2O = ribose 1,5 bisphosphate + phosphate + H+. tmpzr1t_l9r_go_relaxed.owl PRPP pyrophosphatase activity MetaCyc:RXN-10969 molecular_function owl:Class GO:0102094 biolink:NamedThing S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a demethylmenaquinol <=> S-adenosyl-L-homocysteine + H+ + a menaquinol. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.163|MetaCyc:RXN-11046|RHEA:26466 molecular_function owl:Class GO:0070677 biolink:NamedThing rRNA (cytosine-2'-O-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methylcytosine. tmpzr1t_l9r_go_relaxed.owl mah 2009-05-29T03:37:53Z molecular_function owl:Class GO:0090706 biolink:NamedThing specification of plant organ position The regionalization process in which information that determines the correct position at which plant organ primordia are formed is generated and perceived resulting in correct positioning of the new plant organ. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-05T12:33:21Z biological_process owl:Class GO:0001637 biolink:NamedThing G protein-coupled chemoattractant receptor activity Combining with a chemoattractant and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl G-protein coupled chemoattractant receptor activity|G protein chemoattractant receptor activity|G-protein chemoattractant receptor activity molecular_function owl:Class GO:0033452 biolink:NamedThing GUG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GUG codon. tmpzr1t_l9r_go_relaxed.owl GTG codon-amino acid adaptor activity|valine tRNA Note that in the standard genetic code, GTG codes for valine. molecular_function owl:Class GO:0102531 biolink:NamedThing ecdysteroid-phosphate phosphatase activity Catalysis of the reaction: H2O + an ecdysteroid 22-phosphate = hydrogenphosphate + an ecdysteroid. tmpzr1t_l9r_go_relaxed.owl RHEA:63576|MetaCyc:RXN-14734 molecular_function owl:Class GO:0006711 biolink:NamedThing estrogen catabolic process The chemical reactions and pathways resulting in the breakdown of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants. tmpzr1t_l9r_go_relaxed.owl estrogen degradation|oestrogen catabolism|estrogen breakdown|estrogen catabolism|oestrogen catabolic process biological_process owl:Class GO:0040027 biolink:NamedThing negative regulation of vulval development Any process that stops, prevents, or reduces the frequency, rate or extent of development of the vulva. Vulval development is the process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult. tmpzr1t_l9r_go_relaxed.owl down regulation of vulval development|down-regulation of vulval development|downregulation of vulval development|inhibition of vulval development biological_process owl:Class GO:0000474 biolink:NamedThing maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8 S rRNA, 2S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018570 biolink:NamedThing p-cumate 2,3-dioxygenase activity Catalysis of the reaction: p-cumate + NADH + H+ + O2 = NAD+ + cis-2,3-dihydroxy-2,3-dihydro-p-cumate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-664|EC:1.14.12.25|UM-BBD_reactionID:r0395|RHEA:42344 molecular_function owl:Class GO:0047899 biolink:NamedThing formate dehydrogenase (NADP+) activity Catalysis of the reaction: formate + NADP(+) = CO(2) + NADPH. tmpzr1t_l9r_go_relaxed.owl formate:NADP+ oxidoreductase activity|NADP-dependent formate dehydrogenase activity KEGG_REACTION:R00134|MetaCyc:FORMATE-DEHYDROGENASE-NADP+-RXN|EC:1.17.1.10|RHEA:12000 molecular_function owl:Class GO:0140364 biolink:NamedThing GW body A ribonucleoprotein granule located in the cytoplasm and the nucleus. GW-bodies minimally contain the Argonaute2 (Ago2) and TNRC6B proteins, together with specific target RNAs. tmpzr1t_l9r_go_relaxed.owl GW-body pg 2019-07-25T19:26:48Z cellular_component owl:Class GO:0009995 biolink:NamedThing soluble molecule recognition The recognition of soluble molecules in the environment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080083 biolink:NamedThing beta-gentiobiose beta-glucosidase activity Catalysis of the hydrolysis of glucosidic link in beta-gentiobiose. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T04:10:14Z molecular_function owl:Class GO:0034929 biolink:NamedThing 1-hydroxypyrene 7,8-monooxygenase activity Catalysis of the reaction: 1-hydroxypyrene + O2 + 2 H+ + 2 e- = 1-hydroxypyrene-7,8-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0949 molecular_function owl:Class GO:0003837 biolink:NamedThing beta-ureidopropionase activity Catalysis of the reaction: N-carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3. tmpzr1t_l9r_go_relaxed.owl N-carbamoyl-beta-alanine amidohydrolase activity RHEA:11184|EC:3.5.1.6|MetaCyc:BETA-UREIDOPROPIONASE-RXN|Reactome:R-HSA-73620|Reactome:R-HSA-73591 molecular_function owl:Class GO:0042603 biolink:NamedThing capsule A protective structure surrounding some fungi and bacteria, attached externally to the cell wall and composed primarily of polysaccharides. Capsules are highly organized structures that adhere strongly to cells and cannot be easily removed. Capsules play important roles in pathogenicity, preventing phagocytosis by other cells, adherance, and resistance to dessication. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Capsule_(microbiology) GO:0030113|GO:0042604 cellular_component owl:Class GO:0034640 biolink:NamedThing establishment of mitochondrion localization by microtubule attachment The directed movement of a mitochondrion by attachment to a microtubule, followed by elongation of the microtubule by tubulin polymerization. tmpzr1t_l9r_go_relaxed.owl mitochondrial localization by microtubule attachment|mitochondrion migration by microtubule attachment|establishment of mitochondrion localisation by microtubule attachment|mitochondrial migration by microtubule attachment biological_process owl:Class GO:0008826 biolink:NamedThing cysteine sulfinate desulfinase activity Catalysis of the reaction: 3-sulfinoalanine = L-alanine + sulfite. tmpzr1t_l9r_go_relaxed.owl cysteine sulphinate desulphinase activity MetaCyc:RXN0-279|RHEA:28278 molecular_function owl:Class GO:0034946 biolink:NamedThing 3-isopropylbut-3-enoyl-CoA thioesterase activity Catalysis of the reaction: 3-isopropylbut-3-enoyl-CoA + H2O = 3-isopropylbut-3-enoic acid + CoASH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0994 molecular_function owl:Class GO:0098638 biolink:NamedThing laminin binding involved in cell-matrix adhesion Any laminin protein binding that occurs as part of cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0002402 biolink:NamedThing B cell tolerance induction in mucosal-associated lymphoid tissue Tolerance induction taking place in the mucosal-associated lymphoid tissue (MALT) mediated by B cells. tmpzr1t_l9r_go_relaxed.owl B cell tolerance induction in MALT biological_process owl:Class GO:0071187 biolink:NamedThing protocadherin-alpha-v4-protocadherin-gamma-b4 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdhga1-Pcdhgb4 complex mah 2009-11-23T04:22:08Z cellular_component owl:Class GO:0062187 biolink:NamedThing anandamide 8,9 epoxidase activity Catalysis of the reaction: N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + O2 + reduced [NADPH--hemoprotein reductase] = H(+) + H2O + N-(8,9-epoxy-5Z,11Z,14Z-eicosatrienoyl)-ethanolamine + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:53140 dph 2019-11-26T18:51:34Z molecular_function owl:Class GO:0003959 biolink:NamedThing NADPH dehydrogenase activity Catalysis of the reaction: NADPH + H+ + acceptor = NADP+ + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl reduced nicotinamide adenine dinucleotide phosphate dehydrogenase activity|triphosphopyridine nucleotide diaphorase activity|triphosphopyridine diaphorase activity|NADPH:(acceptor) oxidoreductase activity|NADPH:acceptor oxidoreductase activity|TPNH-diaphorase activity|NADPH2 diaphorase activity|NADPH diaphorase activity|NADPH2-dehydrogenase activity|old yellow enzyme|OYE|NADPH-dehydrogenase activity|dihydronicotinamide adenine dinucleotide phosphate dehydrogenase activity|TPNH dehydrogenase activity Reactome:R-HSA-9018867|RHEA:13149|Reactome:R-HSA-9027632|UM-BBD_enzymeID:e0523|MetaCyc:NADPH-DEHYDROGENASE-RXN|Reactome:R-HSA-9018901|Reactome:R-HSA-9027625|EC:1.6.99.1|Reactome:R-HSA-9027631 GO:0008468|GO:0016660 molecular_function owl:Class GO:0047310 biolink:NamedThing glutamine-scyllo-inositol transaminase activity Catalysis of the reaction: 2,4,6/3,5-pentahydroxycyclohexanone + L-glutamine = 1-amino-1-deoxy-scyllo-inositol + 2-oxoglutaramate. tmpzr1t_l9r_go_relaxed.owl glutamine-scyllo-inosose aminotransferase activity|glutamine-scyllo-inosose transaminase activity|L-glutamine:2,4,6/3,5-pentahydroxycyclohexanone aminotransferase activity|glutamine--scyllo-inosose transaminase activity|L-glutamine-scyllo-inosose transaminase activity|glutamine--scyllo-inosose aminotransferase activity|glutamine scyllo-inosose aminotransferase activity|L-glutamine-keto-scyllo-inositol aminotransferase activity KEGG_REACTION:R02781|MetaCyc:2.6.1.50-RXN|RHEA:22920|EC:2.6.1.50 molecular_function owl:Class GO:0046936 biolink:NamedThing 2'-deoxyadenosine deaminase activity Catalysis of the reaction: 2'-deoxyadenosine + H2O = deoxyinosine + NH3. tmpzr1t_l9r_go_relaxed.owl deoxyadenosine deaminase reaction MetaCyc:ADDALT-RXN|RHEA:28190 molecular_function owl:Class GO:0102987 biolink:NamedThing palmitoleic acid delta 12 desaturase activity Catalysis of the reaction: palmitoleoyl-CoA + O2 + a reduced electron acceptor <=> (9Z,12Z)-hexadecadienoyl-CoA + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:45096|MetaCyc:RXN-9616 molecular_function owl:Class GO:0002491 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class II The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class II biological_process owl:Class GO:0102350 biolink:NamedThing trans-cerot-2-enoyl-CoA reductase activity Catalysis of the reaction: hexacosanoyl-CoA(4-) + NADP(3-) <=> trans-2-hexacosenoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13309 molecular_function owl:Class GO:0006102 biolink:NamedThing isocitrate metabolic process The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. tmpzr1t_l9r_go_relaxed.owl isocitrate metabolism biological_process owl:Class GO:0010478 biolink:NamedThing chlororespiration A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and O2) involving both a nonphotochemical reduction and re-oxidation of PQ pool. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102279 biolink:NamedThing lecithin:11-cis retinol acyltransferase activity Catalysis of the reaction: an 11-cis retinol-[cellular-retinol-binding-protein] + a phosphatidylcholine <=> a cellular-retinol-binding protein + an 11-cis-retinyl ester + a 1-lysophosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.135|MetaCyc:RXN-12563 molecular_function owl:Class GO:0002530 biolink:NamedThing regulation of systemic arterial blood pressure involved in acute-phase response Any process that modulates the force with which blood travels through the circulatory system that contributes to the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein. tmpzr1t_l9r_go_relaxed.owl regulation of systemic arterial blood pressure during acute phase response|blood pressure regulation during acute phase response biological_process owl:Class GO:0006296 biolink:NamedThing nucleotide-excision repair, DNA incision, 5'-to lesion The endonucleolytic cleavage of the damaged strand of DNA 5' to the site of damage. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound. The incision follows the incision formed 3' to the site of damage. tmpzr1t_l9r_go_relaxed.owl nucleotide-excision repair, DNA incision, 5' to lesion biological_process owl:Class GO:0098979 biolink:NamedThing polyadic synapse A synapse consisting of a single presynapse and multiple postsynapses. These postsynapses may come from the same cell of from different cells. Polyadic synapses are common in arthropod and nematode central nervous systems. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031760 biolink:NamedThing Edg-7 lysophosphatidic acid receptor binding Binding to an Edg-7 lysophosphatidic acid receptor. tmpzr1t_l9r_go_relaxed.owl LPA3 receptor binding|Edg-7 lysophosphatidic acid receptor ligand molecular_function owl:Class GO:0000110 biolink:NamedThing nucleotide-excision repair factor 1 complex One of several protein complexes involved in nucleotide-excision repair; possesses DNA damage recognition and endodeoxynuclease activities. In S. cerevisiae, it is composed of Rad1p, Rad10p, and Rad14p; in human the subunits are ERCC4/XPF, ERCC1 and XPA, respectively. tmpzr1t_l9r_go_relaxed.owl NEF1 complex|XPA-ERCC1-ERCC4 complex Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0021981 biolink:NamedThing subpallium radially oriented migration The migration of cells in the developing subpallium in which cells move from the ventricular and/or subventricular zone toward the surface of the brain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009017 biolink:NamedThing succinylglutamate desuccinylase activity Catalysis of the reaction: N-succinyl-L-glutamate + H(2)O = L-glutamate + succinate. tmpzr1t_l9r_go_relaxed.owl AstE|N2-succinylglutamate desuccinylase activity|SGDS|N-succinyl-L-glutamate amidohydrolase activity KEGG_REACTION:R00411|RHEA:15169|MetaCyc:SUCCGLUDESUCC-RXN|EC:3.5.1.96 molecular_function owl:Class GO:0052755 biolink:NamedThing reduced coenzyme F420:quinone oxidoreductase activity Catalysis of the reaction: reduced coenzyme F420 + 2,3-dimethyl-1,4-naphthoquinone = coenzyme F420 + reduced 2,3-dimethyl-1,4-naphthoquinone. Reduced 2,3-dimethyl-1,4-naphthoquinone is also known as 2,3-dimethyl-1,4-hydronaphthoquinone. tmpzr1t_l9r_go_relaxed.owl F420H2:2,3-dimethyl-1,4-naphthoquinone oxidoreductase activity|F420H2-dependent quinone oxidoreductase activity|F420H2:quinone oxidoreductase activity ai 2011-09-22T04:08:13Z molecular_function owl:Class GO:0051913 biolink:NamedThing regulation of synaptic plasticity by chemical substance The process in which a chemical substance modulates synaptic plasticity, the ability of synapses to change as circumstances require. tmpzr1t_l9r_go_relaxed.owl regulation of synaptic plasticity by drug biological_process owl:Class GO:0097456 biolink:NamedThing terminal loop Portion of myelin-forming Schwann cell consisting of terminal cytoplasmic extensions adhered to the axon at the beginning and end of the myelin sheath. tmpzr1t_l9r_go_relaxed.owl terminal loop of Schwann cell NIF_Subcellular:sao924713546 pr 2012-12-19T13:04:06Z cellular_component owl:Class GO:0005457 biolink:NamedThing GDP-fucose transmembrane transporter activity Enables the transfer of a GDP-fucose from one side of a membrane to the other. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5653596|Reactome:R-HSA-742345 molecular_function owl:Class GO:1990223 biolink:NamedThing positive regulation by symbiont of cytokinin levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the cytokinin levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-16T15:27:27Z biological_process owl:Class GO:0046899 biolink:NamedThing nucleoside triphosphate adenylate kinase activity Catalysis of the reaction: nucleoside triphosphate + AMP = nucleoside diphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl nucleoside-triphosphate-adenylate kinase activity|nucleoside-triphosphate:AMP phosphotransferase activity|guanosine triphosphate-adenylate kinase|nucleoside triphosphate-adenosine monophosphate transphosphorylase activity|GTP:AMP phosphotransferase|isozyme 3 of adenylate kinase activity MetaCyc:2.7.4.10-RXN|Reactome:R-HSA-1008248|EC:2.7.4.10|RHEA:13749 molecular_function owl:Class GO:1901345 biolink:NamedThing response to L-thialysine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-thialysine stimulus. tmpzr1t_l9r_go_relaxed.owl response to thialysine mah 2012-09-07T13:22:49Z biological_process owl:Class GO:0061485 biolink:NamedThing memory T cell proliferation The expansion of a memory T cell population by cell division. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-04T09:52:54Z biological_process owl:Class GO:0099085 biolink:NamedThing DIF dechlorinase activity Catalysis of the reaction: 1-[(3,5-dichloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one => 1-[(3-chloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one + Cl-. tmpzr1t_l9r_go_relaxed.owl DIF-1 3(5)-dechlorinase activity|1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one 3(5)-dechlorinase activity|1-[(3,5-dichloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one 3(5)-dechlorinase activity|differentiation-inducing factor 1 dechlorinase activity|DIF-1 dechlorinase activity|differentiation-inducing factor dechlorinase activity molecular_function owl:Class GO:0001641 biolink:NamedThing group II metabotropic glutamate receptor activity A G protein-coupled receptor that is activated by trans-1-aminocyclopentane-1,3-dicarboxylic acid (t-ACPD) and inhibits adenylate cyclase activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904550 biolink:NamedThing response to arachidonic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arachidonic acid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-13T20:53:24Z biological_process owl:Class GO:1990616 biolink:NamedThing magnesium ion export from mitochondrion The directed movement of magnesium ions out of mitochondrial matrix into the cytosol by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl magnesium ion efflux from mitochondrion mcc 2015-01-21T22:06:42Z biological_process owl:Class GO:0030623 biolink:NamedThing U5 snRNA binding Binding to a U5 small nuclear RNA (U5 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009727 biolink:NamedThing detection of ethylene stimulus The series of events in which an ethylene (ethene) stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of ethylene stimulus|perception of ethene stimulus|detection of ethene stimulus biological_process owl:Class GO:0050111 biolink:NamedThing mycocerosate synthase activity Catalysis of the reaction: acyl-CoA + 7n H(+) + n methylmalonyl-CoA + 2n NADPH = n CO(2) + n CoA + n H(2)O + multi-methyl-branched acyl-CoA + 2n NADP(+). tmpzr1t_l9r_go_relaxed.owl mycocerosic acid synthase activity|acyl-CoA:methylmalonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing) EC:2.3.1.111|KEGG_REACTION:R05189|MetaCyc:MYCOCEROSATE-SYNTHASE-RXN|RHEA:10588 molecular_function owl:Class GO:0047735 biolink:NamedThing cellobiose dehydrogenase (acceptor) activity Catalysis of the reaction: cellobiose + acceptor = cellobiono-1,5-lactone + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl cellobiose:oxygen 1-oxidoreductase activity|CDH activity|phanerochaete chrysosporium cellobiose oxidoreductase activity|cellobiose oxidoreductase activity|cellobiose:(acceptor) 1-oxidoreductase activity|cellobiose oxidase activity|cellobiose dehydrogenase (quinone) activity|cellobiose dehydrogenase activity|cellobiose:acceptor 1-oxidoreductase activity|cellobiose-quinone oxidoreductase activity|CBOR activity RHEA:23484|EC:1.1.99.18|MetaCyc:CELLOBIOSE-DEHYDROGENASE-ACCEPTOR-RXN GO:0047737 molecular_function owl:Class GO:0004856 biolink:NamedThing xylulokinase activity Catalysis of the reaction: D-xylulose + ATP = D-xylulose 5-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl xylulose kinase activity|xylulokinase (phosphorylating)|D-xylulokinase activity|ATP:D-xylulose 5-phosphotransferase activity MetaCyc:XYLULOKIN-RXN|KEGG_REACTION:R01639|EC:2.7.1.17|Reactome:R-HSA-5662466|RHEA:10964 molecular_function owl:Class GO:0140462 biolink:NamedThing pericentric heterochromatin organization The organization of chromatin into heterochromatin at the pericentric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19396|https://github.com/geneontology/go-ontology/issues/22288 pg 2020-05-06T07:47:09Z biological_process owl:Class GO:0050403 biolink:NamedThing trans-zeatin O-beta-D-glucosyltransferase activity Catalysis of the reaction: trans-zeatin + UDP-D-glucose = O-beta-D-glucosyl-trans-zeatin + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl zeatin O-glucosyltransferase activity|UDP-glucose:trans-zeatin O-beta-D-glucosyltransferase activity|zeatin O-beta-D-glucosyltransferase activity|UDPglucose:trans-zeatin O-beta-D-glucosyltransferase activity|zeatin O-b-D-glucosyltransferase activity|uridine diphosphoglucose-zeatin O-glucosyltransferase activity KEGG_REACTION:R02118|RHEA:23224|EC:2.4.1.203|MetaCyc:RXN-4723 molecular_function owl:Class GO:0102701 biolink:NamedThing tricyclene synthase activity Catalysis of the reaction: geranyl diphosphate(3-) <=> tricyclene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:32687|EC:4.2.3.105|MetaCyc:RXN-5121 molecular_function owl:Class GO:0018461 biolink:NamedThing fluoren-9-ol dehydrogenase activity Catalysis of the reaction: fluoren-9-ol + 2 NADP+ = fluoren-9-one + 2 NADPH + 2 H+. tmpzr1t_l9r_go_relaxed.owl fluoren-9-ol:NAD(P)+ oxidoreductase activity|9-fluorenol dehydrogenase activity MetaCyc:9-FLUORENOL-DEHYDROGENASE-RXN|UM-BBD_reactionID:r0408|EC:1.1.1.256 molecular_function owl:Class GO:0038152 biolink:NamedThing C-C chemokine receptor CCR4 signaling pathway A series of molecular signals initiated by a the C-C chemokine type 2 receptor (CCR4) on the surface of a cell binding to one of it's physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl C-C chemokine receptor type 4 signaling pathway|chemokine receptor CCR4 signaling pathway bf 2012-05-11T11:43:34Z biological_process owl:Class GO:0060430 biolink:NamedThing lung saccule development The biological process whose specific outcome is the progression of a lung saccule from an initial condition to its mature state. The lung saccule is the primitive gas exchange portion of the lung composed of type I and type II cells. tmpzr1t_l9r_go_relaxed.owl lung saccular development biological_process owl:Class GO:0140538 biolink:NamedThing negative regulation of conjugation with zygote A process that prevents a zygote from fusing an additional cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16329 pg 2020-11-07T07:50:23Z biological_process owl:Class GO:0061483 biolink:NamedThing sulfinylpropanyl adenylate synthase Catalysis of the reaction: cysteine sulfanate + GTP + IMP = sulfinylpropanyl adenylate + GDP + 3 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl SPA synthase dph 2012-11-16T10:08:15Z molecular_function owl:Class GO:0009934 biolink:NamedThing regulation of meristem structural organization Any process that modulates the frequency, rate or extent of meristem organization. tmpzr1t_l9r_go_relaxed.owl regulation of meristem organization|regulation of meristem organisation biological_process owl:Class GO:0097493 biolink:NamedThing structural molecule activity conferring elasticity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell, providing elasticity and recoiling. tmpzr1t_l9r_go_relaxed.owl pr 2013-07-26T09:47:26Z molecular_function owl:Class GO:0061486 biolink:NamedThing high-affinity fructose transmembrane transporter activity Enables the transfer of fructose from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity fructose transmembrane transporter activity dph 2012-12-04T10:34:55Z molecular_function owl:Class GO:0047462 biolink:NamedThing phenylalanine racemase (ATP-hydrolyzing) activity Catalysis of the reaction: L-phenylalanine + ATP + H(2)O = D-phenylalanine + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl phenylalanine racemase (adenosine triphosphate-hydrolysing)|gramicidin S synthetase I|phenylalanine racemase (ATP-hydrolysing)|phenylalanine racemase activity EC:5.1.1.11|MetaCyc:5.1.1.11-RXN|RHEA:20201|KEGG_REACTION:R00686 molecular_function owl:Class GO:0009050 biolink:NamedThing glycopeptide catabolic process The chemical reactions and pathways resulting in the breakdown of glycopeptides, a compound in which carbohydrate is covalently attached to an oligopeptide composed of residues of L and/or D-amino acids. The term usually denotes a product of proteolytic degradation of a glycoprotein but includes glycated peptide. tmpzr1t_l9r_go_relaxed.owl glycopeptide breakdown|glycopeptide catabolism|glycopeptide degradation biological_process owl:Class GO:0043786 biolink:NamedThing cinnamate reductase activity Catalysis of the reaction: 3-phenylpropanoate + NAD+ = (E)-cinnamate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.- molecular_function owl:Class GO:0106149 biolink:NamedThing indole-3-carbonyl nitrile 4-hydroxylase activity Catalysis of the reaction: indole-3-carbonyl nitrile + NADPH +O2=4-hydroxyindole-3- carbonyl nitrile + NADP(+) + H20. tmpzr1t_l9r_go_relaxed.owl RHEA:57864|EC:1.14.14.165 hjd 2018-09-10T19:44:15Z molecular_function owl:Class GO:0034722 biolink:NamedThing gamma-glutamyl-peptidase activity Catalysis of the cleavage of a gamma-linked glutamate bond. tmpzr1t_l9r_go_relaxed.owl gamma-glutamyl hydrolase activity RHEA:56784|MetaCyc:3.4.19.9-RXN|EC:3.4.19.9 molecular_function owl:Class GO:0019031 biolink:NamedThing viral envelope The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins. tmpzr1t_l9r_go_relaxed.owl viral glycoprotein|viral outside membrane Wikipedia:Viral_envelope cellular_component owl:Class GO:0015643 biolink:NamedThing toxic substance binding Binding to a toxic substance, a poisonous substance that causes damage to biological systems. tmpzr1t_l9r_go_relaxed.owl antitoxin activity|lipoprotein antitoxin molecular_function owl:Class GO:0047858 biolink:NamedThing dihydroxyfumarate decarboxylase activity Catalysis of the reaction: dihydroxyfumarate + H(+) = 2-hydroxy-3-oxopropanoate + CO(2). tmpzr1t_l9r_go_relaxed.owl dihydroxyfumarate carboxy-lyase activity|dihydroxyfumarate carboxy-lyase (tartronate-semialdehyde-forming) MetaCyc:DIHYDROXYFUMARATE-DECARBOXYLASE-RXN|EC:4.1.1.54|KEGG_REACTION:R03127|RHEA:13845 molecular_function owl:Class GO:0060096 biolink:NamedThing serotonin secretion, neurotransmission The regulated release of serotonin by a cell, in which released serotonin acts as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl serotonin release, neurotransmission biological_process owl:Class GO:0002032 biolink:NamedThing desensitization of G protein-coupled receptor signaling pathway by arrestin The process that inhibits the signaling function of a G protein-coupled receptor by uncoupling the receptor from its downstream G proteins. tmpzr1t_l9r_go_relaxed.owl arrestin-mediated desensitization of G-protein coupled receptor protein signaling pathway|arrestin mediated desensitisation of G-protein coupled receptor protein signalling pathway|arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway|desensitization of G-protein coupled receptor protein signaling pathway by arrestin biological_process owl:Class GO:0047316 biolink:NamedThing glutamine-phenylpyruvate transaminase activity Catalysis of the reaction: keto-phenylpyruvate + L-glutamine = 2-oxoglutaramate + L-phenylalanine. tmpzr1t_l9r_go_relaxed.owl glutamine transaminase K activity|L-glutamine:phenylpyruvate aminotransferase activity|glutamine--phenylpyruvate aminotransferase activity|glutamine-phenylpyruvate aminotransferase activity EC:2.6.1.64|MetaCyc:2.6.1.64-RXN|RHEA:17593|KEGG_REACTION:R01375 molecular_function owl:Class GO:0106384 biolink:NamedThing dGMP salvage Any process which produces a dGMP from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl hjd 2021-06-11T19:36:06Z biological_process owl:Class GO:0008692 biolink:NamedThing 3-hydroxybutyryl-CoA epimerase activity Catalysis of the reaction: (S)-3-hydroxybutanoyl-CoA = (R)-3-hydroxybutanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-hydroxybutanoyl-CoA 3-epimerase activity|3-hydroxyacyl-CoA epimerase activity|3-hydroxybutyryl coenzyme A epimerase activity RHEA:21760|MetaCyc:OHBUTYRYL-COA-EPIM-RXN|EC:5.1.2.3 molecular_function owl:Class GO:0071885 biolink:NamedThing N-terminal protein N-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine (AdoMet) to the alpha-amino group of the N-terminal amino or imino acid residue of a protein substrate. For example, yeast Tae1p and mammalian family member METTL11A preferentially modify the N-terminal residue of substrates with the N-terminal sequence X-Pro-Lys, where X can be Pro, Ala, or Ser. tmpzr1t_l9r_go_relaxed.owl X-Pro-Lys N-terminal methyltransferase mah 2010-09-13T04:53:57Z molecular_function owl:Class GO:1904615 biolink:NamedThing cellular response to biphenyl Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biphenyl stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-27T19:08:49Z biological_process owl:Class GO:0035458 biolink:NamedThing cellular response to interferon-beta Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon. tmpzr1t_l9r_go_relaxed.owl cellular response to beta-1 interferon|cellular response to fiblaferon|cellular response to fibroblast interferon bf 2010-04-16T11:10:40Z biological_process owl:Class GO:0048001 biolink:NamedThing erythrose-4-phosphate dehydrogenase activity Catalysis of the reaction: D-erythrose 4-phosphate + H(2)O + NAD(+) = 4-phospho-D-erythronate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl erythrose 4-phosphate dehydrogenase activity|D-erythrose 4-phosphate:NAD+ oxidoreductase activity|Epd dehydrogenase activity|E4P dehydrogenase activity|E4PDH|GapB KEGG_REACTION:R01825|EC:1.2.1.72|MetaCyc:ERYTH4PDEHYDROG-RXN|RHEA:12056 GO:0033724 molecular_function owl:Class GO:0098527 biolink:NamedThing neuromuscular junction of somatic muscle A neuromuscular junction in which the target muscle cell is a somatic muscle cell, such as those found in nematodes and arthropods. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-14T12:07:05Z cellular_component owl:Class GO:0035610 biolink:NamedThing protein side chain deglutamylation The removal of a glutamate residue from the side chain of a protein. Glutamate side chains are added to glutamic acid residues within the primary protein sequence during polyglutamylation. tmpzr1t_l9r_go_relaxed.owl removal of posttranslational polyglutamylation|shortening of glutamate side chain bf 2010-11-18T01:09:03Z biological_process owl:Class GO:0002195 biolink:NamedThing 2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine-tRNA biosynthesis The chemical reactions and pathways involved in the biosynthesis of 2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine (ms2io6A), a modified nucleoside present in position 37 (adjacent to and 3' of the anticodon) of tRNAs. tmpzr1t_l9r_go_relaxed.owl In Salmonella typhimurium, 2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine (ms2io6A; also referred to as 2-methylthio cis-ribozeatin) is found in tRNA, most likely in the species that have ms2i6A in E. coli. hjd 2011-08-31T02:20:06Z biological_process owl:Class GO:0004577 biolink:NamedThing N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-D-glucosaminyl-diphosphodolichol = UDP + N,N''-diacetylchitobiosyldiphosphodolichol. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylglucosamine-dolichylacetylglucosamine pyrophosphate acetylglucosaminyltransferase activity|UDP-GlcNAc:dolichyl-pyrophosphoryl-GlcNAc GlcNAc transferase activity|UDP-N-acetyl-D-glucosamine:N-acetyl-D-glucosaminyl-diphosphodolichol N-acetyl-D-glucosaminyltransferase activity|N,N'-diacetylchitobiosylpyrophosphoryldolichol synthase activity MetaCyc:2.4.1.141-RXN|Reactome:R-HSA-446207|Reactome:R-HSA-5633241|RHEA:23380|EC:2.4.1.141 molecular_function owl:Class GO:0102713 biolink:NamedThing gibberellin A25 hydroxylase activity Catalysis of the reaction: gibberellin A25 + 2-oxoglutarate(2-) + O2 <=> gibberellin A46 + succinate(2-) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6543 molecular_function owl:Class GO:0004409 biolink:NamedThing homoaconitate hydratase activity Catalysis of the reaction: (-)-homoisocitrate = cis-homoaconitate + H(2)O. tmpzr1t_l9r_go_relaxed.owl (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate hydro-lyase [(Z)-but-1-ene-1,2,4-tricarboxylate-forming]|LysF|2-hydroxybutane-1,2,4-tricarboxylate hydro-lyase activity|Lys4|cis-homoaconitase activity|homoaconitase activity|HACN activity EC:4.2.1.36|MetaCyc:HOMOACONITATE-HYDRATASE-RXN|RHEA:15485|KEGG_REACTION:R04371 molecular_function owl:Class GO:0061116 biolink:NamedThing ductus venosus closure The morphogenesis process in which the ductus venosus changes to no longer permit blood flow after birth. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T07:21:53Z biological_process owl:Class GO:0010813 biolink:NamedThing neuropeptide catabolic process The chemical reactions and pathways resulting in the breakdown of neuropeptides. Neuropeptides are signaling peptides that travel across a synaptic junction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062092 biolink:NamedThing Yae1-Lto1 complex A cytosolic complex that functions as an substrate-specific adaptor, linking the cytosolic iron-sulfur protein assembly (CIA) targeting complex to apo-Rli1p, an ABC protein involved in ribosome recycling, facilitating Fe-S cluster insertion and the maturation of the Rli1p. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-15T17:39:46Z cellular_component owl:Class GO:0047835 biolink:NamedThing D-tryptophan N-acetyltransferase activity Catalysis of the reaction: D-tryptophan + acetyl-CoA = N-acetyl-D-tryptophan + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:D-tryptophan N-acetyltransferase activity|D-tryptophan acetyltransferase activity|acetyl-CoA-D-tryptophan-alpha-N-acetyltransferase activity KEGG_REACTION:R02481|RHEA:10060|MetaCyc:D-TRYPTOPHAN-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.34 molecular_function owl:Class GO:0140451 biolink:NamedThing counting factor complex A secreted multiprotein complex composed of 4 proteins, regulating group size during aggregation in cooperative development. An example of this complex is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19220 pg 2020-04-15T08:52:26Z cellular_component owl:Class GO:0036158 biolink:NamedThing outer dynein arm assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal dynein outer arm, an outer arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. tmpzr1t_l9r_go_relaxed.owl ODA assembly bf 2012-03-21T02:25:01Z biological_process owl:Class GO:1900074 biolink:NamedThing negative regulation of neuromuscular synaptic transmission Any process that stops, prevents or reduces the frequency, rate or extent of neuromuscular synaptic transmission. tmpzr1t_l9r_go_relaxed.owl inhibition of neuromuscular synaptic transmission|down-regulation of neuromuscular synaptic transmission|down regulation of neuromuscular synaptic transmission|downregulation of neuromuscular synaptic transmission kmv 2012-01-26T10:14:18Z biological_process owl:Class GO:0034805 biolink:NamedThing benzo(a)pyrene-trans-11,12-dihydrodiol dehydrogenase activity Catalysis of the reaction: benzo(a)pyrene-trans-11,12-dihydrodiol = 11,12-dihydroxybenzo(a)pyrene + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1121 molecular_function owl:Class GO:0052847 biolink:NamedThing inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity Catalysis of the reaction: 1,5-bisdiphosphoinositol-1D-myo-inositol 2,3,4,6-tetrakisphosphate + H2O = 1-diphospho-1D-myo-inositol 2,3,4,5,6-pentakisphosphate + phosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10975 ai 2011-12-05T11:02:23Z molecular_function owl:Class GO:0071479 biolink:NamedThing cellular response to ionizing radiation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. tmpzr1t_l9r_go_relaxed.owl cellular response to ionising radiation|cellular response to ionizing radiation stimulus mah 2009-12-18T02:00:31Z biological_process owl:Class GO:0042718 biolink:NamedThing yolk granule Discrete structures that partition the water-insoluble portion of the yolk of oocytes and ova, which may or may not be membrane enclosed. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033366 biolink:NamedThing protein localization to secretory granule A process in which a protein is transported to, or maintained in, a location within a secretory granule. tmpzr1t_l9r_go_relaxed.owl protein localization in secretory granule|protein localisation in secretory granule biological_process owl:Class GO:0106035 biolink:NamedThing protein maturation by [4Fe-4S] cluster transfer The transfer of an assembled 4Fe-4S] cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-07T17:26:10Z biological_process owl:Class GO:1990030 biolink:NamedThing pericellular basket Ramification of basket cell axon surrounding cell bodies, forming the characteristic pericellular baskets from which the cell class derives its name. tmpzr1t_l9r_go_relaxed.owl peri-cellular basket|peri cellular basket NIF_Subcellular:sao413722576 pr 2013-02-07T12:53:54Z cellular_component owl:Class GO:0018523 biolink:NamedThing quinoline 2-oxidoreductase activity Catalysis of the reaction: quinoline + acceptor + H2O = isoquinolin-1(2H)-one + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl quinoline:acceptor 2-oxidoreductase (hydroxylating) RHEA:17749|MetaCyc:1.3.99.17-RXN|UM-BBD_reactionID:r0045|EC:1.3.99.17 molecular_function owl:Class GO:0004704 biolink:NamedThing NF-kappaB-inducing kinase activity Catalysis of the phosphorylation of the alpha or beta subunit of the inhibitor of kappaB kinase complex (IKK). tmpzr1t_l9r_go_relaxed.owl NIK molecular_function owl:Class GO:0051168 biolink:NamedThing nuclear export The directed movement of substances out of the nucleus. tmpzr1t_l9r_go_relaxed.owl nucleus export|substance nuclear export|export from nucleus biological_process owl:Class GO:0038046 biolink:NamedThing G protein-coupled enkephalin receptor activity Combining with an enkephalin, and transmitting the signal across the membrane by activating an associated G-protein. A enkephalin is a pentapeptide (Tyr-Gly-Gly-Phe-Met or Tyr-Gly-Gly-Phe-Leu) involved in regulating nociception in the body. tmpzr1t_l9r_go_relaxed.owl delta-opioid receptor activity|enkephalin receptor activity https://github.com/geneontology/go-ontology/issues/21110 bf 2011-11-14T01:30:14Z molecular_function owl:Class GO:0033739 biolink:NamedThing preQ1 synthase activity Catalysis of the reaction: 7-aminomethyl-7-deazaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl preQ0 oxidoreductase activity|7-aminomethyl-7-carbaguanine:NADP+ oxidoreductase activity|YkvM|preQ0 reductase activity|7-cyano-7-deazaguanine reductase activity|queuine:NADP+ oxidoreductase activity|queuine synthase activity|QueF RHEA:13409|MetaCyc:RXN0-4022|KEGG_REACTION:R07605|EC:1.7.1.13 molecular_function owl:Class GO:1902312 biolink:NamedThing negative regulation of copper ion transmembrane transport Any process that stops, prevents or reduces the frequency, rate or extent of copper ion transmembrane transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of copper cation transmembrane transport|down-regulation of copper cation transmembrane transport|inhibition of copper ion membrane transport|down-regulation of copper ion membrane transport|inhibition of copper ion transmembrane transport|down regulation of copper ion transmembrane transport|downregulation of copper ion transmembrane transport|downregulation of copper ion membrane transport|inhibition of copper cation transmembrane transport|downregulation of copper cation transmembrane transport|down regulation of copper ion membrane transport|down-regulation of copper ion transmembrane transport|down regulation of copper cation transmembrane transport|negative regulation of copper ion membrane transport di 2013-07-19T20:59:37Z biological_process owl:Class GO:0031177 biolink:NamedThing phosphopantetheine binding Binding to phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052830 biolink:NamedThing inositol-1,3,4,6-tetrakisphosphate 6-phosphatase activity Catalysis of the reaction: inositol-1,3,4,6-tetrakisphosphate + H2O = inositol-1,3,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855171 ai 2011-11-29T10:56:59Z molecular_function owl:Class GO:0010407 biolink:NamedThing non-classical arabinogalactan protein metabolic process The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein where other amino acids besides Hyp, Ala, Ser, Thr and Gly can be present and grouped into regions, such as a Cys-rich or Asn-rich domains. tmpzr1t_l9r_go_relaxed.owl non-classical arabinogalactan protein metabolism biological_process owl:Class GO:0033252 biolink:NamedThing regulation of beta-lactamase activity Any process that modulates the frequency, rate or extent of beta-lactamase activity, the hydrolysis of a beta-lactam to yield a substituted beta-amino acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050016 biolink:NamedThing kynurenine 7,8-hydroxylase activity Catalysis of the reaction: kynurenate + donor-H2 + O2 = 7,8-dihydro-7,8-dihydroxykynurenate + acceptor. tmpzr1t_l9r_go_relaxed.owl kynurenate 7,8-hydroxylase activity|kynurenic acid hydroxylase activity|kynurenate,hydrogen-donor:oxygen oxidoreductase (hydroxylating)|kynurenic hydroxylase activity RHEA:11968|MetaCyc:KYNURENINE-78-HYDROXYLASE-RXN|EC:1.14.99.2 molecular_function owl:Class GO:0070732 biolink:NamedThing spindle envelope An organelle envelope that surrounds the chromosomes and the central part of the spindle apparatus during mitosis and meiosis; observed in many invertebrates. The spindle envelope consists of membrane layers, called parafusorial membranes, derived from endoplasmic reticulum membrane; in male meiosis it forms during prometaphase and persists until early in the ensuing interphase. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-18T12:00:59Z cellular_component owl:Class GO:0004024 biolink:NamedThing alcohol dehydrogenase activity, zinc-dependent Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+, requiring the presence of zinc. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-71707 molecular_function owl:Class GO:0006621 biolink:NamedThing protein retention in ER lumen The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. tmpzr1t_l9r_go_relaxed.owl maintenance of protein location in ER lumen biological_process owl:Class GO:0005546 biolink:NamedThing phosphatidylinositol-4,5-bisphosphate binding Binding to phosphatidylinositol-4,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' and 5' positions. tmpzr1t_l9r_go_relaxed.owl PtdIns(4,5)P2 binding|1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate binding|phosphatidylinositol 4,5-bisphosphate binding|PIP2 binding molecular_function owl:Class GO:0042629 biolink:NamedThing mast cell granule Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042422 biolink:NamedThing norepinephrine catabolic process The chemical reactions and pathways resulting in the breakdown of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl norepinephrine breakdown|norepinephrine degradation|noradrenaline catabolic process|levarterenol catabolic process|levarterenol catabolism|norepinephrine catabolism|noradrenaline catabolism Wikipedia:Norepinephrine#Degradation biological_process owl:Class GO:1990666 biolink:NamedThing PCSK9-LDLR complex A protein complex consisting of the serine protease PCSK9 (proprotein convertase subtilisin/kexin-9) and a low-density lipoprotein receptor (LDLR). Interaction typically occurs through the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR, and complex formation promotes degradation of the LDLR through the endosome/lysosome pathway. tmpzr1t_l9r_go_relaxed.owl PCSK9.LDLR complex|PCSK9:low-density lipoprotein receptor complex|PCSK9:EGF-A complex|PCSK9/LDL-R complex bf 2015-03-02T10:19:15Z cellular_component owl:Class GO:0035377 biolink:NamedThing transepithelial water transport The directed movement of water (H2O) from one side of an epithelium to the other. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-18T10:55:38Z biological_process owl:Class GO:0044338 biolink:NamedThing canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in mesenchymal stem cell differentiation. tmpzr1t_l9r_go_relaxed.owl canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signalling pathway involved in mesenchymal stem cell differentiation|canonical Wnt-activated signaling pathway involved in mesenchymal stem cell differentiation jl 2010-08-20T03:43:36Z biological_process owl:Class GO:0052650 biolink:NamedThing NADP-retinol dehydrogenase activity Catalysis of the reaction: all-trans-retinol + NADP+ = all-trans-retinal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl all-trans retinal reductase activity|all-trans-retinol dehydrogenase activity|retinol dehydrogenase activity|retinol:NADP+ oxidoreductase activity|NADP(H)-dependent retinol dehydrogenase/reductase activity|retinol dehydrogenase [NADP+] activity Reactome:R-HSA-5623643|EC:1.1.1.300|Reactome:R-HSA-74872|MetaCyc:RXN-10841|Reactome:R-HSA-2464803|Reactome:R-HSA-2466861|Reactome:R-HSA-2471670|Reactome:R-HSA-5419165|Reactome:R-HSA-5615668|Reactome:R-HSA-2464822|Reactome:R-HSA-2465921|KEGG_REACTION:R08379|Reactome:R-HSA-2465940|RHEA:25033 molecular_function owl:Class GO:0032151 biolink:NamedThing mitotic septin complex A heterooligomeric septin complex that acts during mitotic cell division. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051203 biolink:NamedThing peptidyl-aspartic acid reduction to form L-aspartyl aldehyde The reduction of peptidyl-aspartic acid to form peptidyl-L-aspartyl aldehyde, as found photosystem II P680 chlorophyll A apoprotein. tmpzr1t_l9r_go_relaxed.owl peptidyl-aspartic acid reduction to form L-beta-formylalanine|peptidyl-aspartic acid reduction to form L-aspartate-beta-semialdehyde RESID:AA0373 See also UniProtKB:P04160. biological_process owl:Class GO:0030493 biolink:NamedThing bacteriochlorophyll metabolic process The chemical reactions and pathways involving a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants. tmpzr1t_l9r_go_relaxed.owl bacteriochlorophyll metabolism biological_process owl:Class GO:0010345 biolink:NamedThing suberin biosynthetic process The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-1121 biological_process owl:Class GO:0035384 biolink:NamedThing thioester biosynthetic process The chemical reactions and pathways resulting in the formation of a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. tmpzr1t_l9r_go_relaxed.owl thioester biosynthesis|thioester synthesis|thioester anabolism|thioester formation bf 2010-03-18T01:52:11Z biological_process owl:Class GO:0034853 biolink:NamedThing 2,4,4-trimethyl-3-oxopentanoate decarboxylase activity Catalysis of the reaction: 2,4,4-trimethyl-3-oxopentanoate + H+ = 2,2-dimethyl-3-pentanone + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1278 molecular_function owl:Class GO:0043261 biolink:NamedThing laminin-12 complex A laminin complex composed of alpha2, beta1 and gamma3 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-213 complex cellular_component owl:Class GO:0003877 biolink:NamedThing ATP adenylyltransferase activity Catalysis of the reaction: ADP + ATP = phosphate + P(1),P(4)-bis(5'-adenosyl)tetraphosphate. tmpzr1t_l9r_go_relaxed.owl diadenosinetetraphosphate alpha-beta-phosphorylase activity|bis(5'-nucleosyl)-tetraphosphate phosphorylase (NDP-forming) activity|adenine triphosphate adenylyltransferase activity|diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase activity|dinucleoside oligophosphate alphabeta-phosphorylase activity|diadenosine 5',5'''-P(1),P(4)-tetraphosphate phosphorylase activity|diadenosine 5',5'''-P1,P4-tetraphosphate alphabeta-phosphorylase (ADP-forming)|AP-4-A phosphorylase activity|ADP:ATP adenylyltransferase activity|diadenosinetetraphosphate alphabeta-phosphorylase activity RHEA:16577|EC:2.7.7.53|MetaCyc:ATP-ADENYLYLTRANSFERASE-RXN molecular_function owl:Class GO:0035496 biolink:NamedThing lipopolysaccharide-1,5-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + lipopolysaccharide = UDP + 1,5 alpha-D-galactosyl-lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl UDP-D-galactose:(glucosyl)lipopolysaccharide-1,5-D-galactosyltransferase|LPS-1,5-galactosyltransferase activity bf 2010-04-26T03:00:21Z molecular_function owl:Class GO:0046061 biolink:NamedThing dATP catabolic process The chemical reactions and pathways resulting in the breakdown of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate). tmpzr1t_l9r_go_relaxed.owl dATP catabolism|dATP breakdown|dATP degradation biological_process owl:Class GO:0006305 biolink:NamedThing DNA alkylation The addition of alkyl groups to many positions on all four bases of DNA. Alkylating agents can also modify the bases of incoming nucleotides in the course of DNA synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036072 biolink:NamedThing direct ossification The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance, that does not require the replacement of preexisting tissues. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-19T01:47:22Z biological_process owl:Class GO:0034820 biolink:NamedThing 4,9-DSHA hydrolase activity Catalysis of the reaction: (3E,1Z)-4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate + H2O = (2E,4E)-2-hydroxyhexa-2,4-dienoate + 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1152 molecular_function owl:Class GO:0010328 biolink:NamedThing auxin influx transmembrane transporter activity Enables the transfer of auxin, from one side of a membrane to the other, into a cell. tmpzr1t_l9r_go_relaxed.owl auxin influx facilitator molecular_function owl:Class GO:0018129 biolink:NamedThing peptidyl-oxazoline dehydrogenase activity Catalysis of the reduction of a peptide-linked oxazoline to oxazole. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050128 biolink:NamedThing N-feruloylglycine deacylase activity Catalysis of the reaction: N-feruloylglycine + H(2)O = ferulate + glycine. tmpzr1t_l9r_go_relaxed.owl N-feruloylglycine amidohydrolase activity|N-feruloylglycine hydrolase activity EC:3.5.1.71|RHEA:10484|KEGG_REACTION:R03579|MetaCyc:N-FERULOYLGLYCINE-DEACYLASE-RXN molecular_function owl:Class GO:0047470 biolink:NamedThing (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity Catalysis of the reaction: 4-[(1->4)-alpha-D-glucosyl](n-1)-D-glucose = 1-alpha-D-[(1->4)-alpha-D-glucosyl](n-1)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase|maltodextrin alpha-D-glucosyltransferase activity|malto-oligosyltrehalose synthase activity EC:5.4.99.15|RHEA:13621|MetaCyc:5.4.99.15-RXN molecular_function owl:Class GO:0033704 biolink:NamedThing 3beta-hydroxy-5alpha-steroid dehydrogenase activity Catalysis of the reaction: 3beta-hydroxy-5alpha-pregnane-20-one + NADP(+) = 5alpha-pregnane-3,20-dione + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3beta-hydroxy-5alpha-steroid:NADP+ 3-oxidoreductase activity RHEA:18137|EC:1.1.1.278|MetaCyc:1.1.1.278-RXN|KEGG_REACTION:R07138 molecular_function owl:Class GO:0009769 biolink:NamedThing photosynthesis, light harvesting in photosystem II After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem II, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042565 biolink:NamedThing RNA nuclear export complex A complex which usually consists of three components, e.g. in Xenopus and yeast, the export receptor CRM1 (also known as exportin 1), the Ran protein and any RNA with a nuclear export sequence (NES). The complex acts to export RNA molecules with a NES from the nucleus through a nuclear pore. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031074 biolink:NamedThing nucleocytoplasmic transport complex Any complex that acts to move proteins or RNAs into or out of the nucleus through nuclear pores. tmpzr1t_l9r_go_relaxed.owl nucleocytoplasmic shuttling complex cellular_component owl:Class GO:0102615 biolink:NamedThing ent-cassadiene-C2-hydroxylase activity Catalysis of the reaction: ent-cassa-12,15-diene + NADPH + O2 + H+ <=> 2alpha-hydroxy-ent-cassadiene + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:55484|MetaCyc:RXN-15462 molecular_function owl:Class GO:0102853 biolink:NamedThing 1-18:1-2-18:1-sn-glycerol-3-phosphocholine desaturase activity Catalysis of the reaction: 1-18:1-2-18:1-sn-glycerol-3-phosphocholine + O2 + a reduced electron acceptor <=> 1-18:2-2-18:1-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8320 molecular_function owl:Class GO:0047708 biolink:NamedThing biotinidase activity Catalysis of the reaction: biotin amide + H2O = biotin + NH3. tmpzr1t_l9r_go_relaxed.owl biotin-amide amidohydrolase activity|amidohydrolase biotinidase activity Reactome:R-HSA-3076905|RHEA:13081|Reactome:R-HSA-3325540|Reactome:R-HSA-4167509|EC:3.5.1.12|Reactome:R-HSA-4225086|MetaCyc:BIOTINIDASE-RXN molecular_function owl:Class GO:0021660 biolink:NamedThing rhombomere 3 formation The process that gives rise to rhombomere 3. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008330 biolink:NamedThing protein tyrosine/threonine phosphatase activity Catalysis of the reactions: protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0046478 biolink:NamedThing lactosylceramide metabolic process The chemical reactions and pathways involving lactosylceramides, Gal-beta-(1->4)-Glc-beta-(1->1') ceramides, any compound formed by the replacement of the glycosidic C1 hydroxyl group of lactose by a ceramide group. They are the precursors of both gangliosides and globosides. tmpzr1t_l9r_go_relaxed.owl lactosylceramide metabolism biological_process owl:Class GO:0045175 biolink:NamedThing basal protein localization Any process in which a protein is transported to, or maintained in, basal regions of the cell. tmpzr1t_l9r_go_relaxed.owl establishment and maintenance of basal protein localization|establishment and maintenance of protein localization in basal part of cell|basal protein localisation biological_process owl:Class GO:0033745 biolink:NamedThing L-methionine-(R)-S-oxide reductase activity Catalysis of the reaction: L-methionine + thioredoxin disulfide + H2O = L-methionine (R)-S-oxide + thioredoxin. tmpzr1t_l9r_go_relaxed.owl FRMsr|free met-R-(o) reductase activity|L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine (R)-S-oxide-forming] activity|free-methionine (R)-S-oxide reductase activity RHEA:21260|EC:1.8.4.14|MetaCyc:1.8.4.14-RXN molecular_function owl:Class GO:0048104 biolink:NamedThing establishment of body hair or bristle planar orientation Orientation of hairs or sensory bristles that cover the body surface of an adult, such that they all point in a uniform direction along the plane of the epithelium from which they project. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070549 biolink:NamedThing siRNA-mediated gene silencing by inhibition of translation A process of negative regulation of translation that is mediated by the association of small interfering RNAs (siRNAs) with a cognate target mRNA. tmpzr1t_l9r_go_relaxed.owl RNA interference, negative regulation of translation|negative regulation of translation involved in RNA interference|inhibition of translation involved in RNA interference|downregulation of translation involved in RNA interference|down regulation of translation involved in RNA interference|down-regulation of translation involved in RNA interference biological_process owl:Class GO:0008134 biolink:NamedThing transcription factor binding Binding to a transcription factor, a protein required to initiate or regulate transcription. tmpzr1t_l9r_go_relaxed.owl TF binding https://github.com/geneontology/go-ontology/issues/19354 Note that this term should not be used for direct annotation. Please consier one of the more specific descendants, GO:0140297 ; DNA-binding transcription factor binding, GO:0140296 ; general transcription initiation factor binding or GO:0001221 ; transcription coregulator binding. molecular_function owl:Class GO:0001563 biolink:NamedThing detection of protozoan The series of events in which a stimulus from a protozoan is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl detection of protozoa|detection of protozoon|perception of protozoa biological_process owl:Class GO:0102961 biolink:NamedThing 4,4'-diapophytofluene desaturase activity Catalysis of the reaction: all-trans-4,4'-diapophytofluene + FAD + H+ = all-trans-4,4'-diapo-zeta-carotene + FADH2. tmpzr1t_l9r_go_relaxed.owl RHEA:31399|MetaCyc:RXN-9304 molecular_function owl:Class GO:0016040 biolink:NamedThing glutamate synthase (NADH) activity Catalysis of the reaction: 2 L-glutamate + NAD(+) = 2-oxoglutarate + L-glutamine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-glutamate synthase activity|NADH-dependent glutamate synthase activity|GOGAT activity|glutamate (reduced nicotinamide adenine dinucleotide) synthase|NADH-glutamate synthase activity|L-glutamate synthase (NADH)|L-glutamate:NAD+ oxidoreductase (transaminating)|NADH: GOGAT|L-glutamate synthetase activity MetaCyc:GLUTAMATE-SYNTHASE-NADH-RXN|RHEA:13753|EC:1.4.1.14|KEGG_REACTION:R00093 molecular_function owl:Class GO:0062243 biolink:NamedThing double membrane vesicle viral factory outer membrane The outer of the two endoplasmic reticulum-derived lipid bilayer membranes that bound a double membrane vesicle viral factory. tmpzr1t_l9r_go_relaxed.owl outer membrane of double membrane vesicle viral factory dph 2020-04-20T20:47:40Z cellular_component owl:Class GO:1990268 biolink:NamedThing response to gold nanoparticle Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold nanoparticle stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2014-01-10T17:37:34Z biological_process owl:Class GO:0042720 biolink:NamedThing mitochondrial inner membrane peptidase complex Protease complex of the mitochondrial inner membrane, consisting of at least two subunits, involved in processing of both nuclear- and mitochondrially-encoded proteins targeted to the intermembrane space. tmpzr1t_l9r_go_relaxed.owl IMP|mitochondrion inner membrane peptidase complex cellular_component owl:Class GO:0102762 biolink:NamedThing eriodictyol 4'-O-methyltransferase activity Catalysis of the reaction: eriodictyol + S-adenosyl-L-methionine <=> H+ + hesperetin(1-) + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7754 molecular_function owl:Class GO:0031037 biolink:NamedThing myosin II filament disassembly The disassembly of a bipolar filament composed of myosin II molecules. tmpzr1t_l9r_go_relaxed.owl myosin II depolymerization biological_process owl:Class GO:1902782 biolink:NamedThing response to decane Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a decane stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-21T12:50:08Z biological_process owl:Class GO:0097625 biolink:NamedThing low-affinity basic amino acid transmembrane transporter activity Enables the transfer of basic amino acids from one side of a membrane to the other. Basic amino acids have a pH above 7. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity basic amino acid transmembrane transporter activity pr 2014-08-20T14:23:18Z molecular_function owl:Class GO:1990150 biolink:NamedThing VEGF-A complex A homodimeric, extracellular protein complex containing two VEGF-A monomers. Binds to and activates a receptor tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl vascular endothelial growth factor A complex bhm 2013-07-30T13:24:41Z cellular_component owl:Class GO:1902328 biolink:NamedThing bacterial-type DNA replication initiation Any DNA replication initiation that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication initiation involved in bacterial-type DNA replication|DNA endoreduplication initiation involved in bacterial-type DNA replication|DNA re-replication initiation involved in bacterial-type DNA replication|DNA-dependent DNA replication initiation involved in bacterial-type DNA replication jl 2013-07-25T10:48:02Z biological_process owl:Class GO:1990488 biolink:NamedThing anaerobic cellulose catabolic process The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, in absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic cellulose degradation tt 2014-09-20T17:43:59Z biological_process owl:Class GO:0018834 biolink:NamedThing dichloromethane dehalogenase activity Catalysis of the reaction: dichloromethane + H(2)O = 2 chloride + formaldehyde + 2 H(+). tmpzr1t_l9r_go_relaxed.owl dichloromethane chloride-lyase (adding H2O; chloride-hydrolysing; formaldehyde-forming)|dichloromethane chloride-lyase (chloride-hydrolysing) MetaCyc:DICHLOROMETHANE-DEHALOGENASE-RXN|UM-BBD_reactionID:r0188|EC:4.5.1.3|KEGG_REACTION:R00603|RHEA:15397 molecular_function owl:Class GO:0003974 biolink:NamedThing UDP-N-acetylglucosamine 4-epimerase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-galactosamine. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine 4-epimerase activity|uridine diphosphoacetylglucosamine epimerase activity|uridine diphosphate N-acetylglucosamine-4-epimerase activity|UDP-GlcNAc 4-epimerase activity|uridine 5'-diphospho-N-acetylglucosamine-4-epimerase activity|UDP acetylglucosamine epimerase activity EC:5.1.3.7|MetaCyc:UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN|RHEA:20517 molecular_function owl:Class GO:0016223 biolink:NamedThing beta-alanine-pyruvate transaminase activity Catalysis of the reaction: L-alanine + 2-oxopropanoate = pyruvate + beta-alanine. tmpzr1t_l9r_go_relaxed.owl beta-alanine-pyruvate aminotransferase activity|beta-alanine--pyruvate aminotransferase activity|L-alanine:3-oxopropanoate aminotransferase activity|omega-amino acid--pyruvate aminotransferase activity|beta-alanine-alpha-alanine transaminase activity EC:2.6.1.18|Reactome:R-HSA-909776|MetaCyc:2.6.1.18-RXN|RHEA:14077 molecular_function owl:Class GO:0062079 biolink:NamedThing ATG2-ATG18 complex A protein complex essential for autophagy during nutrient deprivation, a catabolic process that sequesters undesired cellular material into autophagosomes for delivery to lysosomes for degradation. Contributes to nutrition homeostasis and damage control in eukaryotic cells. Functions at a late step of autophagosome formation for efficient completion of sequestration, probably through facilitating recruitment of ATG8-phosphatidylethanolamine (PE) to the preautophagosomal structure (PAS) and/or its protection from deconjugation by ATG4. Composed of ATG2 and ATG18 in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl dph 2018-10-12T13:47:25Z cellular_component owl:Class GO:0003954 biolink:NamedThing NADH dehydrogenase activity Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl NADH diaphorase activity|diphosphopyrinase activity|NADH:acceptor oxidoreductase activity|beta-NADH dehydrogenase dinucleotide activity|NADH:(acceptor) oxidoreductase activity|NADH2 dehydrogenase activity|DPNH diaphorase activity|reduced diphosphopyridine nucleotide diaphorase activity|dihydrocodehydrogenase I dehydrogenase activity|NADH oxidoreductase activity|type I dehydrogenase activity|type 1 dehydrogenase activity|diphosphopyridine diaphorase activity|diaphorase activity|cytochrome c reductase activity|NADH hydrogenase activity|NADH:cytochrome c oxidoreductase activity|NADH-menadione oxidoreductase activity|dihydronicotinamide adenine dinucleotide dehydrogenase activity RHEA:11356|MetaCyc:NADH-DEHYDROGENASE-RXN molecular_function owl:Class GO:0050471 biolink:NamedThing uracilylalanine synthase activity Catalysis of the reaction: O3-acetyl-L-serine + uracil = 3-(uracil-1-yl)-L-alanine + acetate. tmpzr1t_l9r_go_relaxed.owl O3-acetyl-L-serine:uracil 1-(2-amino-2-carboxyethyl)transferase activity|3-O-acetyl-L-serine:uracil 1-(2-amino-2-carboxyethyl)transferase activity|O(3)-acetyl-L-serine acetate-lyase (adding uracil) activity|isowillardiine synthase activity|Willardiine synthase activity|O3-acetyl-L-serine acetate-lyase (adding uracil) RHEA:11496|MetaCyc:URACILYLALANINE-SYNTHASE-RXN|EC:2.5.1.53 molecular_function owl:Class GO:0106153 biolink:NamedThing phosphorylated histone binding Binding to a histone in which a residue has been modified by phosphorylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-19T17:23:06Z molecular_function owl:Class GO:0072205 biolink:NamedThing metanephric collecting duct development The process whose specific outcome is the progression of a collecting duct in the metanephros over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T11:15:37Z biological_process owl:Class GO:0051109 biolink:NamedThing crotonobetaine-CoA ligase activity Catalysis of the reaction: CoA + crotono-betaine + ATP = AMP + diphosphate + crotonobetainyl-CoA. tmpzr1t_l9r_go_relaxed.owl crotonobetaine/carnitine-CoA ligase activity|crotonobetaine-CoA synthase activity MetaCyc:CROTCOALIG-RXN|RHEA:30079 molecular_function owl:Class GO:0033307 biolink:NamedThing phytol salvage A process that generates phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl phytol salvage pathway MetaCyc:PWY-5107 biological_process owl:Class GO:1901938 biolink:NamedThing (-)-exo-alpha-bergamotene metabolic process The chemical reactions and pathways involving (-)-exo-alpha-bergamotene. tmpzr1t_l9r_go_relaxed.owl (-)-exo-alpha-bergamotene metabolism ms 2013-02-18T14:55:23Z biological_process owl:Class GO:0033776 biolink:NamedThing phenylacetone monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + phenylacetone = benzyl acetate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl phenylacetone,NADPH:oxygen oxidoreductase activity|PAMO KEGG_REACTION:R07201|EC:1.14.13.92|RHEA:10124|MetaCyc:1.14.13.92-RXN molecular_function owl:Class GO:1903794 biolink:NamedThing cortisol binding Binding to cortisol. tmpzr1t_l9r_go_relaxed.owl mr 2015-01-14T19:02:31Z molecular_function owl:Class GO:0047584 biolink:NamedThing 4-oxalmesaconate hydratase activity Catalysis of the reaction: 2-hydroxy-4-oxobutane-1,2,4-tricarboxylate = (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate + H(2)O. tmpzr1t_l9r_go_relaxed.owl oxalmesaconate hydratase activity|2-hydroxy-4-oxobutane-1,2,4-tricarboxylate 2,3-hydro-lyase [(E)-4-oxobut-1-ene-1,2,4-tricarboxylate-forming]|2-hydroxy-4-oxobutane-1,2,4-tricarboxylate 2,3-hydro-lyase activity|4-carboxy-2-oxohexenedioate hydratase activity|gamma-oxalmesaconate hydratase activity|4-carboxy-2-oxobutane-1,2,4-tricarboxylate 2,3-hydro-lyase activity RHEA:17401|EC:4.2.1.83|KEGG_REACTION:R04478|MetaCyc:RXN-2463 molecular_function owl:Class GO:0008842 biolink:NamedThing diphosphate-purine nucleoside kinase activity Catalysis of the reaction: diphosphate + a purine nucleoside = monophosphate + a purine mononucleotide. tmpzr1t_l9r_go_relaxed.owl diphosphate:purine nucleoside phosphotransferase activity|diphosphate-dependent nucleoside kinase activity|pyrophosphate-purine nucleoside kinase activity|pyrophosphate-dependent nucleoside kinase activity EC:2.7.1.143|MetaCyc:2.7.1.143-RXN molecular_function owl:Class GO:0097727 biolink:NamedThing blepharoplast An intracellular non-membrane-bounded organelle found in multi-ciliated sperm cells of some primitive land plants, and consisting of many radially arranged ninefold symmetric cylinders. The blepharoplast is involved in de novo formation of multiple centrioles; it enlarges and then disintegrates into many procentrioles, which elongate and ultimately nucleate cilia on the surface of the sperm cell. tmpzr1t_l9r_go_relaxed.owl The blepharoplast should not be confused with a basal body; rather, it acts as the precursor assembly zone for multiple basal bodies. pr 2016-09-23T10:57:18Z cellular_component owl:Class GO:0060197 biolink:NamedThing cloacal septation The separation of the single opening of the digestive, urinary, and reproductive tracts, the cloaca, into multiple isolated openings during development. tmpzr1t_l9r_go_relaxed.owl cloaca septation biological_process owl:Class GO:0047820 biolink:NamedThing D-glutamate cyclase activity Catalysis of the reaction: D-glutamate = 5-oxo-D-proline + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-glutamate hydro-lyase (cyclizing)|D-glutamate hydro-lyase (cyclizing; 5-oxo-D-proline-forming) RHEA:22360|KEGG_REACTION:R01583|EC:4.2.1.48|MetaCyc:D-GLUTAMATE-CYCLASE-RXN molecular_function owl:Class GO:0102835 biolink:NamedThing 1-18:2-2-16:0-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:0-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8295|EC:1.14.19.35 molecular_function owl:Class GO:0035460 biolink:NamedThing L-ascorbate 6-phosphate lactonase activity Catalysis of the reaction: L-ascorbate 6-phosphate + H2O = 3-keto-L-gulonate 6-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28803 bf 2010-04-16T02:05:41Z molecular_function owl:Class GO:0080180 biolink:NamedThing 2-methylguanosine metabolic process The chemical reactions and pathways involving 2-methylguanosine. tmpzr1t_l9r_go_relaxed.owl dhl 2011-04-28T04:41:01Z biological_process owl:Class GO:0080030 biolink:NamedThing methyl indole-3-acetate esterase activity Catalysis of the reaction: methyl indole-3-acetate + H2O = indole-3-acetate + methanol + H+. tmpzr1t_l9r_go_relaxed.owl Methyl IAA esterase activity|MeIAA esterase activity|indole-3-Acetic acid methyl ester esterase activity EC:3.1.1.1|MetaCyc:RXN-10711 molecular_function owl:Class GO:0071283 biolink:NamedThing cellular response to iron(III) ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(III) ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to iron(III) mah 2009-12-10T03:58:00Z biological_process owl:Class GO:0004590 biolink:NamedThing orotidine-5'-phosphate decarboxylase activity Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP. tmpzr1t_l9r_go_relaxed.owl ODCase activity|orotidylic acid decarboxylase activity|orotate monophosphate decarboxylase activity|orotidine-5'-phosphate carboxy-lyase activity|OMP decarboxylase activity|orotidine monophosphate decarboxylase activity|uridine 5'-monophosphate synthase activity|orotidine phosphate decarboxylase activity|orotic decarboxylase activity|OMP-DC|orotidylic decarboxylase activity|OMPdcase activity|orotidine 5'-phosphate decarboxylase activity|orotidine-5'-phosphate carboxy-lyase (UMP-forming)|UMP synthase activity|orotidine-5'-monophosphate decarboxylase activity|orotodylate decarboxylase activity|orotate decarboxylase activity Reactome:R-HSA-73564|EC:4.1.1.23|MetaCyc:OROTPDECARB-RXN|RHEA:11596|KEGG_REACTION:R00965 molecular_function owl:Class GO:0050076 biolink:NamedThing maleate isomerase activity Catalysis of the reaction: maleate = fumarate. tmpzr1t_l9r_go_relaxed.owl maleate cis-trans-isomerase activity RHEA:13169|MetaCyc:MALEATE-ISOMERASE-RXN|EC:5.2.1.1|KEGG_REACTION:R01087 molecular_function owl:Class GO:0003828 biolink:NamedThing alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R = CMP + alpha-N-acetylneuraminyl-(2->8)-alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R. tmpzr1t_l9r_go_relaxed.owl CMP-NeuAc:LM1 alpha-(2->8)-sialyltranferase activity|CMP-N-acetylneuraminate:alpha-N-acetylneuraminyl-2,3-beta-D-galactoside alpha-2,8-N-acetylneuraminyltransferase activity|GD3 synthase activity|CMP-NeuAc:LM1(alpha-2,8) sialyltranferase activity|ganglioside GD3 synthase activity|SAT-2|alpha-N-acetylneuraminide alpha-2,8-sialyltransferase activity|alpha-2,8-sialyltransferase activity|cytidine monophosphoacetylneuraminate-ganglioside GM3|ganglioside GD3 synthetase sialyltransferase activity Reactome:R-HSA-422454|MetaCyc:2.4.99.8-RXN|Reactome:R-HSA-1022133|RHEA:19313|Reactome:R-HSA-4084978|EC:2.4.99.8 molecular_function owl:Class GO:0050550 biolink:NamedThing pinene synthase activity Catalysis of the reaction: geranyl diphosphate = pinene + diphosphate. tmpzr1t_l9r_go_relaxed.owl geranyldiphosphate diphosphate lyase (pinene forming)|(-)-(1S,5S)-pinene synthase activity|geranyl-diphosphate diphosphate-lyase (cyclizing, pinene-forming)|beta-geraniolene synthase activity EC:4.2.3.14|MetaCyc:4.2.3.14-RXN molecular_function owl:Class GO:0097271 biolink:NamedThing protein localization to bud neck A process in which a protein is transported to, or maintained at, a location within a cellular bud neck. tmpzr1t_l9r_go_relaxed.owl protein localisation to bud neck|protein localization to cellular bud neck pr 2012-03-20T03:39:20Z biological_process owl:Class GO:0018851 biolink:NamedThing alpha-pinene-oxide decyclase activity Catalysis of the reaction: alpha-pinene oxide = (Z)-2-methyl-5-isopropylhexa-2,5-dienal. tmpzr1t_l9r_go_relaxed.owl alpha-pinene-oxide lyase (decyclizing)|alpha-pinene oxide lyase activity RHEA:16693|UM-BBD_reactionID:r0743|EC:5.5.1.10|KEGG_REACTION:R04040|MetaCyc:ALPHA-PINENE-OXIDE-DECYCLASE-RXN molecular_function owl:Class GO:0071096 biolink:NamedThing alphaV-beta3 integrin-gelsolin complex A protein complex that consists of an alphaV-beta3 integrin complex bound to gelsolin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-Gsn complex mah 2009-11-06T04:49:31Z cellular_component owl:Class GO:0090404 biolink:NamedThing pollen tube tip The region at growing end of the pollen tube cell, where polarized growth occurs. tmpzr1t_l9r_go_relaxed.owl tb 2011-01-10T10:25:58Z cellular_component owl:Class GO:2000584 biolink:NamedThing negative regulation of platelet-derived growth factor receptor-alpha signaling pathway Any process that stops, prevents or reduces the frequency, rate or extent of platelet-derived growth factor receptor-alpha signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of platelet-derived growth factor receptor-alpha signalling pathway|negative regulation of alphaPDGF receptor signaling pathway|negative regulation of PDGFR-alpha signaling pathway|negative regulation of PDGF receptor-alpha signaling pathway bf 2011-04-07T03:26:31Z biological_process owl:Class GO:0061648 biolink:NamedThing tooth replacement The process whose specific outcome is the replacement of an existing tooth with another tooth. tmpzr1t_l9r_go_relaxed.owl dph 2014-10-02T15:26:53Z biological_process owl:Class GO:2001297 biolink:NamedThing N(omega)-methyl-L-arginine catabolic process The chemical reactions and pathways resulting in the breakdown of N(omega)-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl N(omega)-methyl-L-arginine catabolism|N(omega)-methyl-L-arginine degradation|N(omega)-methyl-L-arginine breakdown pr 2012-02-14T03:38:21Z biological_process owl:Class GO:0045313 biolink:NamedThing rhabdomere membrane biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a rhabdomere membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047799 biolink:NamedThing cyclopentanone monooxygenase activity Catalysis of the reaction: cyclopentanone + H(+) + NADPH + O(2) = 5-valerolactone + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl cyclopentanone oxygenase activity|cyclopentanone 1,2-monooxygenase activity|cyclopentanone,NADPH:oxygen oxidoreductase (5-hydroxylating, lactonizing) MetaCyc:CYCLOPENTANONE-MONOOXYGENASE-RXN|KEGG_REACTION:R02554|EC:1.14.13.16|RHEA:15737 molecular_function owl:Class GO:0010045 biolink:NamedThing response to nickel cation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel cation stimulus. tmpzr1t_l9r_go_relaxed.owl response to nickel biological_process owl:Class GO:0102641 biolink:NamedThing (R)-lactaldehyde dehydrogenase activity Catalysis of the reaction: (R)-propane-1,2-diol + NADP <=> (R)-lactaldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15743 molecular_function owl:Class GO:0102594 biolink:NamedThing cyanidin 7-O-glucoside acyltransferase(acyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3,7-di-O-beta-D-glucoside betaine + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> cyanidin 3-O-glucoside-7-O-(6-O-(p-hydroxybenzoyl)-glucoside) + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15372 molecular_function owl:Class GO:0098618 biolink:NamedThing selenomethionine-tRNA ligase activity Catalysis of the reaction: ATP + L-selenomethionine + tRNA(Met) => AMP + diphosphate + selenomethionyl-tRNA(Met). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408546 molecular_function owl:Class GO:0060896 biolink:NamedThing neural plate pattern specification The developmental process that results in the creation of defined areas or spaces within the neural plate to which cells respond and eventually are instructed to differentiate. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T02:06:27Z biological_process owl:Class GO:0033458 biolink:NamedThing GAC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GAC codon. tmpzr1t_l9r_go_relaxed.owl aspartic acid tRNA Note that in the standard genetic code, GAC codes for aspartic acid. molecular_function owl:Class GO:0072230 biolink:NamedThing metanephric proximal straight tubule development The process whose specific outcome is the progression of the metanephric proximal straight tubule over time, from its formation to the mature structure. The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule. tmpzr1t_l9r_go_relaxed.owl metanephric S3 development mah 2010-03-18T03:38:53Z biological_process owl:Class GO:0033856 biolink:NamedThing pyridoxine 5'-phosphate synthase activity Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = 2 H(2)O + H(+) + phosphate + pyridoxine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl 1-deoxy-D-xylulose-5-phosphate:3-amino-2-oxopropyl phosphate 3-amino-2-oxopropyltransferase (phosphate-hydrolysing; cyclizing) activity|PNP synthase activity|pyridoxine 5-phosphate phospho lyase activity RHEA:15265|EC:2.6.99.2|MetaCyc:PDXJ-RXN|KEGG_REACTION:R05838 molecular_function owl:Class GO:0062011 biolink:NamedThing mitochondrial respiratory chain complex IV pre-assembly complex A protein complex that contributes to and regulates mitochondrial respiratory chain complex IV (COX) formation. It acts by regulating mitochondrial COX1 translation and by promoting the assembly of COX components. tmpzr1t_l9r_go_relaxed.owl COX1 preassemply complex|COX pre-assemply complex dph 2018-02-28T14:50:26Z cellular_component owl:Class GO:0097296 biolink:NamedThing activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway Any process that initiates the activity of an inactive cysteine-type endopeptidase involved in the apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl activation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway|activation of initiator caspase activity Components of the DISC (death-inducing signaling complex) may be annotated to this term. These include ligand-bound receptors such as FAS/CD95 (though care should be taken because FAS can also act as a non-apoptotic signal transducer), and signaling molecules such as FADD (FAS-associated protein with a death domain), cIAPs (cellular inhibitor of apoptosis proteins), c-FLIPs and caspases 8 and 10. Note that GO:0097296 should only be used to annotate gene products directly involved in the initiation or start up of an inactive cysteine-type endopeptidase activity involved in the apoptotic signaling pathway (also known as an initiator caspase). If the evidence provided is not sufficient to account for direct activation of this enzymatic activity, consider using the more generic terms GO:2001269 positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway or GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. pr 2012-05-02T03:19:35Z biological_process owl:Class GO:0033767 biolink:NamedThing 4-hydroxyacetophenone monooxygenase activity Catalysis of the reaction: 4'-hydroxyacetophenone + H(+) + NADPH + O(2) = 4-hydroxyphenyl acetate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl HAPMO|(4-hydroxyphenyl)ethan-1-one,NADPH:oxygen oxidoreductase (ester-forming) activity KEGG_REACTION:R06892|EC:1.14.13.84|UM-BBD_reactionID:r0756|MetaCyc:1.14.13.84-RXN|RHEA:22916 molecular_function owl:Class GO:0018426 biolink:NamedThing O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine. The polypeptide backbones of glycoproteins and mucin-like proteoglycans are extensively modified with a complex array of phosphoglycan chains that are linked to Ser/Thr-rich domains via a common Man-alpha1-PO4-Ser linkage. tmpzr1t_l9r_go_relaxed.owl O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine anabolism|O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine synthesis|O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine formation|O3-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine biosynthesis RESID:AA0297 biological_process owl:Class GO:0019324 biolink:NamedThing L-lyxose metabolic process The chemical reactions and pathways involving L-lyxose, the L-enantiomer of aldopentose lyxo-pentose, the C-2 epimer of xylose. tmpzr1t_l9r_go_relaxed.owl L-lyxose metabolism MetaCyc:LYXMET-PWY biological_process owl:Class GO:0090638 biolink:NamedThing phosphatidylcholine biosynthesis from phosphatidylethanolamine The phosphatidylcholine biosynthetic process that depends on direct conversion of the phosphatidyl-base phosphatidylethanolamine to phosphatidylcholine by successive methylations. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-23T15:56:12Z biological_process owl:Class GO:0061987 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter by glucose Any process involving glucose that decreases the frequency, rate or extent or transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-15T17:48:00Z biological_process owl:Class GO:0033071 biolink:NamedThing vancomycin metabolic process The chemical reactions and pathways involving vancomycin, (3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid, a complex glycopeptide from Streptomyces orientalis that inhibits a specific step in the synthesis of the peptidoglycan layer in Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl vancomycin metabolism biological_process owl:Class GO:0106364 biolink:NamedThing 4-hydroxy-3-all-trans-hexaprenylbenzoate oxygenase activity 4-hydroxy-3-all-trans-hexaprenylbenzoate + 2 H+ + O2 + 2 reduced [2Fe-2S]-[ferredoxin] = 3,4-dihydroxy-5-all-trans-hexaprenylbenzoate + H2O + 2 oxidized [2Fe-2S]-[ferredoxin]. tmpzr1t_l9r_go_relaxed.owl RHEA:20361 hjd 2021-02-09T15:52:26Z molecular_function owl:Class GO:0046555 biolink:NamedThing acetylxylan esterase activity Catalysis of the deacetylation of xylans and xylo-oligosaccharides. tmpzr1t_l9r_go_relaxed.owl MetaCyc:3.1.1.72-RXN|EC:3.1.1.72 molecular_function owl:Class GO:0006180 biolink:NamedThing deoxyguanosine salvage Any process that generates deoxyguanosine from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062154 biolink:NamedThing N6-mAMP deaminase activity Catalysis of the reaction: H(+) + H2O + N6-methyl-AMP = IMP + methylamine. tmpzr1t_l9r_go_relaxed.owl MAPDA RHEA:16001 dph 2019-09-20T13:16:37Z molecular_function owl:Class GO:0062049 biolink:NamedThing protein phosphatase inhibitor complex A protein-containing complex that inhibits protein phosphatase activity by directly binding to a protein phosphatase. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-30T19:03:26Z cellular_component owl:Class GO:0046870 biolink:NamedThing cadmium ion binding Binding to a cadmium ion (Cd). tmpzr1t_l9r_go_relaxed.owl copper/cadmium binding|cadmium binding|Cd ion binding molecular_function owl:Class GO:0047560 biolink:NamedThing 3-dehydrosphinganine reductase activity Catalysis of the reaction: NADP(+) + sphinganine = 3-dehydrosphinganine + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-oxosphinganine reductase activity|D-3-oxosphinganine reductase activity|DSR activity|3-oxosphinganine:NADPH oxidoreductase activity|D-3-dehydrosphinganine reductase activity|D-3-oxosphinganine:B-NADPH oxidoreductase activity|3-ketosphinganine reductase activity|D-erythro-dihydrosphingosine:NADP+ 3-oxidoreductase activity|KTS reductase activity EC:1.1.1.102|RHEA:22640|Reactome:R-HSA-428123|MetaCyc:3-DEHYDROSPHINGANINE-REDUCTASE-RXN|KEGG_REACTION:R02978 molecular_function owl:Class GO:0009973 biolink:NamedThing adenylyl-sulfate reductase activity Catalysis of the reaction: AMP + sulfite + acceptor = adenylyl sulfate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl AMP, sulfite:acceptor oxidoreductase (adenosine-5'-phosphosulfate-forming)|AMP, sulfite:(acceptor) oxidoreductase (adenosine-5'-phosphosulfate-forming)|adenosine 5'-phosphosulfate reductase|adenosine phosphosulfate reductase activity|APS reductase activity|adenylyl-sulphate reductase activity|APS-reductase RHEA:24240|EC:1.8.99.2|MetaCyc:ADENYLYLSULFATE-REDUCTASE-RXN molecular_function owl:Class GO:0072263 biolink:NamedThing metanephric intraglomerular mesangial cell proliferation The multiplication or reproduction of intraglomerular glomerular mesangium cells in the metanephros by cell division, resulting in the expansion of their population. Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney. They are required for filtration, structural support and phagocytosis. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-30T02:27:53Z biological_process owl:Class GO:0072123 biolink:NamedThing intraglomerular mesangial cell proliferation The multiplication or reproduction of intraglomerular glomerular mesangium cells by cell division, resulting in the expansion of their population. Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney. They are required for filtration, structural support and phagocytosis. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T01:44:29Z biological_process owl:Class GO:0034201 biolink:NamedThing response to oleic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oleic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to oleate biological_process owl:Class GO:0047183 biolink:NamedThing anthocyanin 5-aromatic acyltransferase activity Catalysis of the reaction: anthocyanidin-3,5-diglucoside + hydroxycinnamoyl-CoA = anthocyanidin 3-glucoside-5-hydroxycinnamoylglucoside + CoA. tmpzr1t_l9r_go_relaxed.owl hydroxycinnamoyl-CoA:anthocyanidin 3,5-diglucoside 5-O-glucoside-6'''-O-hydroxycinnamoyltransferase activity MetaCyc:RXN-7945|EC:2.3.1.153|RHEA:15661 molecular_function owl:Class GO:0102782 biolink:NamedThing cholestanol hydroxylase activity Catalysis of the reaction: H+ + epidihydrocholesterin + O2 + NADPH = (22alpha)-hydroxy-cholestanol + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7878 molecular_function owl:Class GO:1903391 biolink:NamedThing regulation of adherens junction organization Any process that modulates the frequency, rate or extent of adherens junction organization. tmpzr1t_l9r_go_relaxed.owl regulation of adherens junction assembly and maintenance|regulation of adherens junction organisation als 2014-08-27T10:08:38Z biological_process owl:Class GO:0097343 biolink:NamedThing ripoptosome assembly The aggregation, arrangement and bonding together of a set of components to form a ripoptosome, a protein complex whose formation can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-18T12:57:20Z biological_process owl:Class GO:0086021 biolink:NamedThing SA node cell to atrial cardiac muscle cell communication by electrical coupling The process that mediates signaling interactions between an SA node cardiomyocyte and an atrial cardiomyocyte by transfer of current between their adjacent cytoplasms via intercellular protein channels. tmpzr1t_l9r_go_relaxed.owl SA node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling|sinoatrial node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling|SA node cardiac muscle cell to atrial cardiac muscle cell communication by electrical coupling|SAN cardiomyocyte to atrial cardiomyocyte communication by electrical coupling|sinus node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling tb 2011-11-10T09:20:39Z biological_process owl:Class GO:0080044 biolink:NamedThing quercetin 7-O-glucosyltransferase activity Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034866 biolink:NamedThing 2,4,4-trimethylpentanoyl-CoA dehydrogenase activity Catalysis of the reaction: 2,4,4-trimethylpentanoyl-CoA = 2,4,4-trimethylpent-2-enoyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1276 molecular_function owl:Class GO:0050113 biolink:NamedThing inositol oxygenase activity Catalysis of the reaction: myo-inositol + O(2) = D-glucuronate + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl MOO activity|meso-inositol oxygenase activity|myo-inositol oxygenase activity|myo-inositol:oxygen oxidoreductase activity Reactome:R-HSA-5678327|EC:1.13.99.1|MetaCyc:MYO-INOSITOL-OXYGENASE-RXN|KEGG_REACTION:R01184|RHEA:23696 molecular_function owl:Class GO:0047556 biolink:NamedThing 3,4-dihydroxyphthalate decarboxylase activity Catalysis of the reaction: 3,4-dihydroxyphthalate + H(+) = 3,4-dihydroxybenzoate + CO(2). tmpzr1t_l9r_go_relaxed.owl 3,4-dihydroxyphthalate 2-decarboxylase activity|3,4-dihydroxyphthalate carboxy-lyase (3,4-dihydroxybenzoate-forming)|3,4-dihydroxyphthalate carboxy-lyase activity EC:4.1.1.69|KEGG_REACTION:R01634|RHEA:18601|UM-BBD_reactionID:r1447|MetaCyc:34-DIHYDROXYPHTHALATE-DECARBOXYLASE-RXN GO:0034913 molecular_function owl:Class GO:0080064 biolink:NamedThing 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4,4-dimethyl-9beta,19-cyclopropylsterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy, 4-beta-methyl-9beta,19-cyclopropylsterol + 3 NADP+ + 3 H2O. tmpzr1t_l9r_go_relaxed.owl 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity dhl 2009-04-13T03:39:58Z biological_process owl:Class GO:0055129 biolink:NamedThing L-proline biosynthetic process The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl pyrrolidine-2-carboxylic acid biosynthetic process jid 2009-10-22T01:59:56Z biological_process owl:Class GO:0019469 biolink:NamedThing octopine catabolic process The chemical reactions and pathways resulting in the breakdown of octopine (N-(1-carboxy-4-guanidinobutyl)-L-alanine), an amino acid derived opine. tmpzr1t_l9r_go_relaxed.owl octopine breakdown|octopine degradation|octopine catabolism MetaCyc:OCTOPINEDEG-PWY biological_process owl:Class GO:0002287 biolink:NamedThing alpha-beta T cell activation involved in immune response The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response. tmpzr1t_l9r_go_relaxed.owl alpha-beta T-cell activation during immune response|alpha-beta T-lymphocyte activation during immune response|alpha-beta T cell activation during immune response|alpha-beta T lymphocyte activation during immune response biological_process owl:Class GO:0031894 biolink:NamedThing V1A vasopressin receptor binding Binding to a V1A vasopressin receptor. tmpzr1t_l9r_go_relaxed.owl V1A vasopressin receptor ligand molecular_function owl:Class GO:0009510 biolink:NamedThing plasmodesmatal desmotubule A tightly wound cylinder of membrane that is located within the plasmodesmal pore and runs the length of the plasmodesma. The desmotubule likely provides a rigid stability to plasmodesmata and confers a fixed diameter and pore size to the plasmodesmal canal, and is linked to the endoplasmic reticulum in each of the adjacent cell. tmpzr1t_l9r_go_relaxed.owl desmotubule central rod GO:0009572 cellular_component owl:Class GO:0102833 biolink:NamedThing sequoyitol galactinol:D-galactosylononitol galactosyltransferase activity Catalysis of the reaction: 1D-5-O-methyl-myo-inositol + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> D-galactosylononitol + myo-inositol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8292 molecular_function owl:Class GO:0036456 biolink:NamedThing L-methionine-(S)-S-oxide reductase activity Catalysis of the reaction: L-methionine (S)-S-oxide + thioredoxin -> L-methionine + thioredoxin disulfide + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:19995 bf 2013-11-27T11:07:19Z molecular_function owl:Class GO:0034565 biolink:NamedThing 1-nitro-1,2-dihydro-1,3,5-triazine hydrolase activity Catalysis of the reaction: 1-nitro-1,2-dihydro-1,3,5-triazine + 2 H2O = 1-nitro-1,3,5-triazinane-2,4-diol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0872|EC:3.5.99.- molecular_function owl:Class GO:0044210 biolink:NamedThing 'de novo' CTP biosynthetic process The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components. tmpzr1t_l9r_go_relaxed.owl 'de novo' cytidine 5'-triphosphate biosynthetic process jl 2009-10-22T03:22:34Z biological_process owl:Class GO:0071443 biolink:NamedThing tDNA binding Binding to DNA sequences encoding transfer RNA. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-16T03:47:31Z molecular_function owl:Class GO:0019371 biolink:NamedThing cyclooxygenase pathway The chemical reactions and pathways by which prostaglandins are formed from arachidonic acid, and in which prostaglandin-endoperoxide synthase (cyclooxygenase) catalyzes the committed step in the conversion of arachidonic acid to the prostaglandin-endoperoxides PGG2 and PGH2. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008412 biolink:NamedThing 4-hydroxybenzoate octaprenyltransferase activity Catalysis of the reaction: farnesylfarnesylgeranyl diphosphate + p-hydroxybenzoate = 3-octaprenyl-4-hydroxybenzoate + diphosphate. tmpzr1t_l9r_go_relaxed.owl PHB polyprenyl diphosphate transferase activity|para-hydroxybenzoate transferase activity|4-HB polyprenyltransferase activity|para-hydroxybenzoate:polyprenyltransferase activity|para-hydroxybenzoate-polyprenyl diphosphate transferase activity RHEA:27782|MetaCyc:4OHBENZOATE-OCTAPRENYLTRANSFER-RXN|EC:2.5.1.39 GO:0048043|GO:0000043|GO:0048044 molecular_function owl:Class GO:0140672 biolink:NamedThing ATAC complex A chromatin remodelling complex that regulates transcription via acetylation primarily of nucleosomal histones H3 and possibly H4. Shares the histone acetylation (HAT) module of GCN5/PCAF-ADA2-ADA3-SGF29 (or orthologs) with the related SAGA complex (GO:0000124). Contains HAT subunits GCN5 or PCAF in a mutually exclusive manner. In addition to the HAT module contains DR1/NC2B, KAT14, MBIP, WDR5, YEATS2 and ZZZ3 or orthologs. Also regulates the activity of non-histone targets and orchestrates mitotic progression by regulating Cyclin A degradation through acetylation. tmpzr1t_l9r_go_relaxed.owl G-ATAC complex|KAT2A-containing ATAC complex|Ada two A containing complex|Ada Two-A containing complex|ADA2A-containing complex|KAT2B-containing ATAC complex|Ada-Two-A-containing complex https://github.com/geneontology/go-ontology/issues/21335 pg 2021-06-25T11:05:14Z cellular_component owl:Class GO:0047171 biolink:NamedThing glucarolactone O-hydroxycinnamoyltransferase activity Catalysis of the reaction: glucarolactone + sinapoyl-CoA = O-sinapoylglucarolactone + CoA. tmpzr1t_l9r_go_relaxed.owl sinapoyl-CoA:glucarolactone O-(hydroxycinnamoyl)transferase activity EC:2.3.1.132|RHEA:14261|MetaCyc:2.3.1.132-RXN molecular_function owl:Class GO:0060890 biolink:NamedThing limb spinous cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal spinous cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-13T01:31:30Z biological_process owl:Class GO:0046867 biolink:NamedThing carotenoid transport The directed movement of carotenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carotenoids are tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009026 biolink:NamedThing tagaturonate reductase activity Catalysis of the reaction: D-altronate + NAD(+) = D-tagaturonate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl TagUAR|altronate oxidoreductase activity|D-tagaturonate reductase activity|altronic oxidoreductase activity|altronate dehydrogenase activity|D-altronate:NAD+ 3-oxidoreductase activity|tagaturonate dehydrogenase activity RHEA:17813|EC:1.1.1.58|KEGG_REACTION:R02555|MetaCyc:ALTRO-OXIDOREDUCT-RXN molecular_function owl:Class GO:0042786 biolink:NamedThing evasion of host immune response via regulation of host antigen processing and presentation Any mechanism of active immune avoidance which works by regulating the host's antigen processing or presentation pathways, e.g. by blocking any stage in MHC class II presentation. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active immune evasion via regulation of antigen processing and presentation|active immune evasion via modulation of antigen processing and presentation|active evasion of host immune response via regulation of host antigen processing and presentation|active evasion of host immune response via regulation of host antigen processing and presentation pathway|active immune evasion via modulation of antigen processing/presentation|active evasion of immune response of other organism via regulation of antigen processing and presentation in other organism involved in symbiotic interaction GO:0051813 biological_process owl:Class GO:0050252 biolink:NamedThing retinol O-fatty-acyltransferase activity Catalysis of the reaction: acyl-CoA + retinol = CoA + retinyl ester. tmpzr1t_l9r_go_relaxed.owl retinol fatty-acyltransferase activity|retinol acyltransferase activity|acyl-CoA:retinol O-acyltransferase activity RHEA:11488|MetaCyc:RETINOL-O-FATTY-ACYLTRANSFERASE-RXN|Reactome:R-HSA-8848585|Reactome:R-HSA-2465919|EC:2.3.1.76 molecular_function owl:Class GO:0061175 biolink:NamedThing type II terminal bouton Terminal inflated portion of the axon of a non-glutamatergic neuron, containing the specialized apparatus necessary to release neurotransmitters at a regulatory synapse. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it. tmpzr1t_l9r_go_relaxed.owl type II terminal button dph 2010-07-13T09:18:01Z cellular_component owl:Class GO:0047573 biolink:NamedThing 4-acetamidobutyrate deacetylase activity Catalysis of the reaction: 4-acetamidobutanoate + H2O = acetate + 4-aminobutanoate. tmpzr1t_l9r_go_relaxed.owl 4-acetamidobutanoate amidohydrolase activity EC:3.5.1.63|MetaCyc:4-ACETAMIDOBUTYRATE-DEACETYLASE-RXN|RHEA:15897 molecular_function owl:Class GO:1902615 biolink:NamedThing immune response involved in response to exogenous dsRNA Any immune response that is involved in response to exogenous dsRNA. tmpzr1t_l9r_go_relaxed.owl immune response involved in response to exogenous double-stranded RNA|immune response involved in response to viral dsRNA tb 2014-01-10T01:29:25Z biological_process owl:Class GO:0018754 biolink:NamedThing ammelide aminohydrolase activity Catalysis of the reaction: ammelide + H2O = cyanuric acid + NH3. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8017 molecular_function owl:Class GO:0038108 biolink:NamedThing negative regulation of appetite by leptin-mediated signaling pathway A series of molecular signals initiated by the binding of leptin to a receptor on the surface of a cell, which reduces appetite, the desire or physical craving for food. tmpzr1t_l9r_go_relaxed.owl negative regulation of appetite by leptin-mediated signalling pathway|inhibition of appetite by leptin signaling|reduction of appetite by leptin-mediated signaling|suppression of appetite by leptin-mediated signaling pathway bf 2012-03-09T11:14:36Z biological_process owl:Class GO:0033762 biolink:NamedThing response to glucagon Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus. tmpzr1t_l9r_go_relaxed.owl response to glucagon stimulus biological_process owl:Class GO:0030381 biolink:NamedThing chorion-containing eggshell pattern formation The regionalization process that gives rise to the structural pattern of a chorion-containing eggshell such as those found in insects. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0086098 biolink:NamedThing angiotensin-activated signaling pathway involved in heart process An angiotensin receptor signaling pathway which contributes to a circulatory system process carried out by the heart. tmpzr1t_l9r_go_relaxed.owl angiotensin receptor signalling pathway involved in heart process|angiotensin-mediated signaling pathway involved in heart process|angiotensin receptor signaling pathway involved in heart process bf biological_process owl:Class GO:0019237 biolink:NamedThing centromeric DNA binding Binding to a centromere, a region of chromosome where the spindle fibers attach during mitosis and meiosis. tmpzr1t_l9r_go_relaxed.owl centromere binding molecular_function owl:Class GO:0006436 biolink:NamedThing tryptophanyl-tRNA aminoacylation The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. The tryptophanyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a tryptophan-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004042 biolink:NamedThing acetyl-CoA:L-glutamate N-acetyltransferase activity Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl amino acid acetyltransferase activity|N-acetylglutamate synthase activity|acetylglutamate acetylglutamate synthetase activity|amino-acid N-acetyltransferase activity|AGAS Reactome:R-HSA-70542|KEGG_REACTION:R00259|EC:2.3.1.1|MetaCyc:N-ACETYLTRANSFER-RXN|RHEA:24292 molecular_function owl:Class GO:0047461 biolink:NamedThing (+)-delta-cadinene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (+)-delta-cadinene. tmpzr1t_l9r_go_relaxed.owl 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, (+)-delta-cadinene-forming)|D-cadinene synthase activity EC:4.2.3.13|MetaCyc:4.6.1.11-RXN|RHEA:19525 molecular_function owl:Class GO:0051421 biolink:NamedThing regulation of endo-1,4-beta-xylanase activity Any process that modulates the frequency, rate or extent of endo-(1->4)-beta-xylanase activity, the catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans. tmpzr1t_l9r_go_relaxed.owl endo-1,4-beta-xylanase regulator|xylanase regulator biological_process owl:Class GO:0072150 biolink:NamedThing juxtaglomerulus cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a juxtaglomerulus cell. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-24T02:09:49Z biological_process owl:Class GO:0018644 biolink:NamedThing toluene 2-monooxygenase activity Catalysis of the reaction: toluene + 1/2 O2 = 2-hydroxytoluene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0222|EC:1.14.13.243|RHEA:20349|MetaCyc:TOLUENE-2-MONOOXYGENASE-RXN molecular_function owl:Class GO:0033956 biolink:NamedThing beta-apiosyl-beta-glucosidase activity Catalysis of the reaction: 7-[beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranosyloxy]isoflavonoid + H2O = a 7-hydroxyisoflavonoid + beta-D-apiofuranosyl-(1->6)-D-glucose. tmpzr1t_l9r_go_relaxed.owl isoflavonoid-7-O-beta[D-apiosyl-(1->6)-beta-D-glucoside] disaccharidase activity|furcatin hydrolase activity|7-[beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranosyloxy]isoflavonoid beta-D-apiofuranosyl-(1->6)-D-glucohydrolase activity|isoflavonoid 7-O-beta-apiosyl-glucoside beta-glucosidase activity MetaCyc:3.2.1.161-RXN|EC:3.2.1.161|MetaCyc:RXN-9156|RHEA:21488 molecular_function owl:Class GO:0015050 biolink:NamedThing methane monooxygenase complex A protein complex that possesses methane monooxygenase activity; dimeric and trimeric complexes have been characterized. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047239 biolink:NamedThing hydroxymandelonitrile glucosyltransferase activity Catalysis of the reaction: 4-hydroxymandelonitrile + UDP-D-glucose = H(+) + taxiphyllin + UDP. tmpzr1t_l9r_go_relaxed.owl cyanohydrin glucosyltransferase activity|UDP-glucose:4-hydroxymandelonitrile glucosyltransferase activity|UDPglucose:4-hydroxymandelonitrile glucosyltransferase activity EC:2.4.1.178|RHEA:15961|KEGG_REACTION:R02709|MetaCyc:2.4.1.178-RXN molecular_function owl:Class GO:0060758 biolink:NamedThing foraging behavior by probing substrate Foraging behavior in which an anatomical part of the organism is inserted into the substrate to locate food. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T02:53:09Z biological_process owl:Class GO:0102253 biolink:NamedThing neoagarobiose 1,3-alpha-3,6-anhydro-L-galactosidase activity Catalysis of the reaction: neoagarobiose + H2O <=> 3,6-anhydro-alpha-L-galactopyranose + beta-D-galactoside. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.159|MetaCyc:RXN-12426 molecular_function owl:Class GO:0033475 biolink:NamedThing indoleacetic acid amide conjugate biosynthetic process The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid amide conjugate, a form of indoleacetic acid covalently bound to an amino acid or polypeptide through an amide bond. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid amide conjugate anabolism|indoleacetic acid amide conjugate synthesis|indoleacetic acid amide conjugate formation|indoleacetic acid amide conjugate biosynthesis|indole acetic acid amide conjugate biosynthesis|indole acetic acid amide conjugate biosynthetic process|IAA amide conjugate biosynthetic process MetaCyc:PWY-1782 biological_process owl:Class GO:0085016 biolink:NamedThing dormancy exit of symbiont in host Exit from dormant state, also known as resuscitation, of the symbiont within the host organism. tmpzr1t_l9r_go_relaxed.owl resuscitation of symbiont jl 2010-05-19T03:23:07Z biological_process owl:Class GO:0031704 biolink:NamedThing apelin receptor binding Binding to an apelin receptor. tmpzr1t_l9r_go_relaxed.owl apelin receptor ligand|APJ receptor binding GO:0042569 molecular_function owl:Class GO:0015066 biolink:NamedThing alpha-amylase inhibitor activity Binds to and stops, prevents or reduces the activity of alpha-amylase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1904392 biolink:NamedThing cellular response to ciliary neurotrophic factor Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ciliary neurotrophic factor stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T19:13:10Z biological_process owl:Class GO:0009455 biolink:NamedThing redox taxis The directed movement of a motile cell or organism in response to redox potential. tmpzr1t_l9r_go_relaxed.owl taxis in response to redox potential|taxis in response to redox stimulus|redoxtaxis biological_process owl:Class GO:0010078 biolink:NamedThing maintenance of root meristem identity The process in which an organism retains a population of root meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0001742 biolink:NamedThing oenocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of an oenocyte. Oenocytes are large secretory cells found in clusters underlying the epidermis of larval abdominal segments. tmpzr1t_l9r_go_relaxed.owl oenocyte cell differentiation biological_process owl:Class GO:0042409 biolink:NamedThing caffeoyl-CoA O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + caffeoyl-CoA = S-adenosyl-L-homocysteine + feruloyl-CoA. tmpzr1t_l9r_go_relaxed.owl caffeoyl-CoA 3-O-methyltransferase activity|S-adenosyl-L-methionine:caffeoyl-CoA 3-O-methyltransferase activity|caffeoyl coenzyme A methyltransferase activity|trans-caffeoyl-CoA 3-O-methyltransferase activity RHEA:16925|MetaCyc:CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN|EC:2.1.1.104 molecular_function owl:Class GO:0071544 biolink:NamedThing diphosphoinositol polyphosphate catabolic process The chemical reactions and pathways resulting in the breakdown of a diphosphoinositol polyphosphate, 1,2,3,4,5,6-cyclohexanehexol with one or more diphosphate groups and multiple monophosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diphosphoinositol polyphosphate breakdown|diphosphoinositol polyphosphate degradation|diphosphoinositol polyphosphate catabolism mah 2010-01-12T05:07:10Z biological_process owl:Class GO:0071543 biolink:NamedThing diphosphoinositol polyphosphate metabolic process The chemical reactions and pathways involving a diphosphoinositol polyphosphate, 1,2,3,4,5,6-cyclohexanehexol with one or more diphosphate groups and multiple monophosphate groups attached. tmpzr1t_l9r_go_relaxed.owl diphosphoinositol polyphosphate metabolism mah 2010-01-12T05:04:00Z biological_process owl:Class GO:0004621 biolink:NamedThing glycosylphosphatidylinositol phospholipase D activity Catalysis of the reaction: glycoprotein phosphatidylinositol + H2O = phosphatidate + glycoprotein inositol. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol-specific phospholipase D activity|phosphatidylinositol-glycan-specific phospholipase D activity|glycoprotein phospholipase D activity|GPI-PLD activity|phosphatidylinositol phospholipase D activity|glycoprotein-phosphatidylinositol phosphatidohydrolase activity MetaCyc:GLYCOPROTEIN-PHOSPHOLIPASE-D-RXN|RHEA:10832|Reactome:R-HSA-8940388|EC:3.1.4.50 molecular_function owl:Class GO:0009652 biolink:NamedThing thigmotropism The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Thigmotropism biological_process owl:Class GO:0102747 biolink:NamedThing chlorophyllide-a:geranyl-geranyl diphosphate geranyl-geranyl transferase activity Catalysis of the reaction: H+ + chlorophyllide a(1-) + 2-trans,6-trans,10-trans-geranylgeranyl diphosphate(3-) <=> geranylgeranyl-chlorophyll a + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7663 molecular_function owl:Class GO:0098519 biolink:NamedThing nucleotide phosphatase activity, acting on free nucleotides Catalysis of the reaction: nucleotide + H2O = nucleotide + phosphate. tmpzr1t_l9r_go_relaxed.owl nucleotide phosphatase activity To be used for NTP->NDP or NDP -> NMP. For nucleotide -> nucleoside (all phosphates removed) use nucleotidase. dos 2013-09-26T11:04:45Z molecular_function owl:Class GO:0031885 biolink:NamedThing type 1 member 2 taste receptor binding Binding to a type 1 member 2 taste receptor. tmpzr1t_l9r_go_relaxed.owl type 1 member 2 taste receptor ligand molecular_function owl:Class GO:0018715 biolink:NamedThing 9-phenanthrol UDP-glucuronosyltransferase activity Catalysis of the reaction: 9-phenanthrol + UDP-glucuronate = 9-phenanthryl-beta-D-glucuronide + UDP. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0567 molecular_function owl:Class GO:0061561 biolink:NamedThing trigeminal ganglion formation The process that gives rise to the trigeminal ganglion. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl trigeminal ganglia formation dph 2013-07-10T09:08:13Z biological_process owl:Class GO:0061560 biolink:NamedThing cranial ganglion formation The process that gives rise to a cranial ganglion. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl cranial ganglia formation dph 2013-07-10T09:07:27Z biological_process owl:Class GO:0070780 biolink:NamedThing dihydrosphingosine-1-phosphate phosphatase activity Catalysis of the reaction: dihydrosphingosine 1-phosphate + H2O = dihydrosphingosine + phosphate. tmpzr1t_l9r_go_relaxed.owl dihydrosphingosine-1-phosphate phosphohydrolase activity|sphinganine-1-phosphate phosphatase activity RHEA:27514|Reactome:R-HSA-428664|MetaCyc:RXN3DJ-25 mah 2009-07-02T02:13:49Z molecular_function owl:Class GO:0047739 biolink:NamedThing cephalosporin-C deacetylase activity Catalysis of the reaction: cephalosporin C + H(2)O = acetate + deacetylcephalosporin C + H(+). tmpzr1t_l9r_go_relaxed.owl cephalosporin C deacetylase activity|cephalosporin C acetylase activity|cephalosporin-C acetylhydrolase activity|cephalosporin C acetyl-hydrolase activity|cephalosporin C acetylesterase activity|cephalosporin C acetyl-esterase activity|cephalosporin acetylesterase activity RHEA:22596|MetaCyc:CEPHALOSPORIN-C-DEACETYLASE-RXN|EC:3.1.1.41|KEGG_REACTION:R03062 molecular_function owl:Class GO:0102537 biolink:NamedThing ecdysone-phosphate phosphatase activity Catalysis of the reaction: ecdysone 22-phosphate + H2O <=> ecdysone + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14766 molecular_function owl:Class GO:0034723 biolink:NamedThing DNA replication-dependent chromatin organization The formation or destruction of chromatin structures on newly replicated DNA, coupled to strand elongation. tmpzr1t_l9r_go_relaxed.owl DNA replication-dependent nucleosome organization|DNA replication-dependent nucleosome organisation https://github.com/geneontology/go-ontology/issues/22130 biological_process owl:Class GO:0071329 biolink:NamedThing cellular response to sucrose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:31:22Z biological_process owl:Class GO:1905474 biolink:NamedThing canonical Wnt signaling pathway involved in stem cell proliferation Any canonical Wnt signaling pathway that is involved in stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signaling pathway via beta-catenin involved in stem cell proliferation|Wnt receptor signaling pathway through beta-catenin involved in stem cell proliferation|canonical Wnt-activated signaling pathway involved in stem cell proliferation|canonical Wnt receptor signaling pathway involved in stem cell proliferation|frizzled-1 receptor signaling pathway involved in stem cell proliferation|Wnt receptor signalling pathway through beta-catenin involved in stem cell proliferation bc 2016-09-21T15:59:53Z biological_process owl:Class GO:0044529 biolink:NamedThing regulation of mitochondrial rRNA stability Any process that modulates the propensity of mitochondrial rRNA molecules to degradation. Includes processes that both stabilize and destabilize mitochondrial rRNAs. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-15T03:22:19Z biological_process owl:Class GO:0098770 biolink:NamedThing FBXO family protein binding Binding to a member of the FBXO protein family. Members of this family have an F-box protein motif of approximately 50 amino acids that functions as a site of protein-protein interaction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0110134 biolink:NamedThing meiotic drive A biological process that results in the unequal transmission of alleles, haplotypes, or chromosomes from a parental genome to gametes. In the absence of meiotic drive, the two copies of each gene or chromosome in a diploid organism are transmitted to offspring with equal probability, whereas meiotic drive results in overrepresentation of the driving allele among the surviving products of meiosis. tmpzr1t_l9r_go_relaxed.owl kmv 2019-01-02T17:37:09Z biological_process owl:Class GO:0009940 biolink:NamedThing amino-terminal vacuolar sorting propeptide binding Binding to an amino terminal propeptide, which functions as a sorting signal to sort away the soluble vacuolar protein from Golgi to lytic vacuole via clathrin-coated vesicles. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010209 biolink:NamedThing vacuolar sorting signal binding Binding to a vacuolar sorting signal, a specific peptide sequence that acts as a signal to localize the protein within the vacuole. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098727 biolink:NamedThing maintenance of cell number Any process by which the numbers of cells of a particular type or in a tissue are maintained. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102059 biolink:NamedThing 2-cis,6-cis-farnesyl pyrophosphate synthase activity Catalysis of the reaction: dimethylallyl diphosphate + 2 isopentenyl diphosphate <=> 2 diphosphate + (2Z,6Z)-farnesyl diphosphate. tmpzr1t_l9r_go_relaxed.owl neryl-diphosphate:isopentenyl-diphosphate cistransferase activity EC:2.5.1.92|MetaCyc:RXN-11973|MetaCyc:RXN-10481|RHEA:27810 GO:0102192 molecular_function owl:Class GO:0098629 biolink:NamedThing trans-Golgi network membrane organization A process which results in the assembly, arrangement of constituent parts, or disassembly of a trans-Golgi network membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008688 biolink:NamedThing 3-(3-hydroxyphenyl)propionate hydroxylase activity Catalysis of the reaction: 3-(3-hydroxyphenyl)propionate + NADH + oxygen + H+ = 3-(2,3-dihydroxyphenyl)propionate + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.127|RHEA:24785|MetaCyc:MHPHYDROXY-RXN|KEGG_REACTION:R06786 molecular_function owl:Class GO:0035197 biolink:NamedThing siRNA binding Binding to a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme. tmpzr1t_l9r_go_relaxed.owl small interfering RNA binding molecular_function owl:Class GO:0097125 biolink:NamedThing cyclin B1-CDK1 complex A protein complex consisting of cyclin B1 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:45:15Z cellular_component owl:Class GO:0018187 biolink:NamedThing molybdenum incorporation via L-cysteinyl molybdopterin guanine dinucleotide The incorporation of molybdenum into a protein by L-cysteinyl molybdopterin guanine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0281 biological_process owl:Class GO:0062064 biolink:NamedThing box C/D snoRNP complex binding Binding to a box C/D snoRNP complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:01:03Z molecular_function owl:Class GO:0002268 biolink:NamedThing follicular dendritic cell differentiation The process in which a relatively unspecialized precursor cell acquires the specialized features of a follicular dendritic cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047788 biolink:NamedThing 2-coumarate reductase activity Catalysis of the reaction: 3-(2-hydroxyphenyl)propanoate + NAD(+) = trans-2-coumarate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 3-(2-hydroxyphenyl)propanoate:NAD+ oxidoreductase activity|coumarate reductase activity|melilotate dehydrogenase activity EC:1.3.1.11|MetaCyc:COUMARATE-REDUCTASE-RXN|RHEA:21444|KEGG_REACTION:R03709 molecular_function owl:Class GO:0033309 biolink:NamedThing SBF transcription complex A protein complex that binds to the Swi4/6 cell cycle box (SCB) promoter element, consensus sequence CRCGAAA, and activates transcription during the G1/S transition of the cell cycle. In Saccharomyces, the complex contains a heterodimer of the DNA binding protein Swi4p and the activator Swi6p, and is associated with additional proteins known as Whi5p and Msa1p. tmpzr1t_l9r_go_relaxed.owl SBF complex cellular_component owl:Class GO:0002748 biolink:NamedThing antigen processing and presentation initiated by pattern recognition receptor mediated uptake of antigen Antigen processing and presentation which is initiated by uptake of antigen bound to a cell surface pattern recognition receptor (PRR). tmpzr1t_l9r_go_relaxed.owl antigen processing and presentation initiated by PRR mediated uptake of antigen|antigen processing and presentation initiated by PAMP receptor mediated uptake of antigen biological_process owl:Class GO:0031730 biolink:NamedThing CCR5 chemokine receptor binding Binding to a CCR5 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR5 chemokine receptor ligand molecular_function owl:Class GO:0009390 biolink:NamedThing dimethyl sulfoxide reductase complex An enzyme complex that catalyzes the formation of dimethyl sulfide from dimethyl sulfoxide. tmpzr1t_l9r_go_relaxed.owl dimethyl sulphoxide reductase complex cellular_component owl:Class GO:0032935 biolink:NamedThing sterol sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of a sterol. tmpzr1t_l9r_go_relaxed.owl sterol-sensing domain molecular_function owl:Class GO:0140206 biolink:NamedThing dipeptide import across plasma membrane The directed movement of a dipeptide from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl pg 2018-02-22T15:49:19Z biological_process owl:Class GO:0047817 biolink:NamedThing D-arginase activity Catalysis of the reaction: D-arginine + H(2)O = D-ornithine + urea. tmpzr1t_l9r_go_relaxed.owl D-arginine amidinohydrolase activity EC:3.5.3.10|RHEA:12901|MetaCyc:D-ARGINASE-RXN|KEGG_REACTION:R02458 molecular_function owl:Class GO:0000048 biolink:NamedThing peptidyltransferase activity Catalysis of the reaction: peptidyl-tRNA(1) + aminoacyl-tRNA(2) = tRNA(1) + peptidylaminoacyl-tRNA(2). tmpzr1t_l9r_go_relaxed.owl peptidyl-tRNA:aminoacyl-tRNA N-peptidyltransferase activity https://github.com/geneontology/go-ontology/issues/22192 Reactome:R-HSA-156912|EC:2.3.2.12|MetaCyc:PEPTIDYLTRANSFERASE-RXN molecular_function owl:Class GO:0070123 biolink:NamedThing transforming growth factor beta receptor activity, type III Combining with transforming growth factor beta to initiate a change in cell activity; facilitates ligand binding to type I and type II TGF-beta receptors. tmpzr1t_l9r_go_relaxed.owl betaglycan|type III transforming growth factor beta receptor activity|transforming growth factor beta ligand binding to type III receptor|type III TGFbeta receptor activity|type III TGF-beta receptor activity|endoglin molecular_function owl:Class GO:0008266 biolink:NamedThing poly(U) RNA binding Binding to a sequence of uracil residues in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl poly(U) binding molecular_function owl:Class GO:0090122 biolink:NamedThing cholesterol ester hydrolysis involved in cholesterol transport The cholesterol metabolic process in which cholesterol esters are hydrolyzed into free fatty acids and cholesterol in the lysosome that contributes to intracellular cholesterol transport. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-07T01:06:54Z biological_process owl:Class GO:0120146 biolink:NamedThing sulfatide binding Binding to sulfatide, also known as 3-O-sulfogalactosylceramide, SM4, or sulfated galactocerebroside. Sulfatide is a class of sulfoglycolipid, which are glycolipids that contain a sulfate group. tmpzr1t_l9r_go_relaxed.owl SM4 binding|3-O-sulfogalactosylceramide binding|sulfated galactocerebroside binding krc 2018-03-30T20:44:03Z molecular_function owl:Class GO:0005953 biolink:NamedThing CAAX-protein geranylgeranyltransferase complex A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050640 biolink:NamedThing isopenicillin-N N-acyltransferase activity Catalysis of the reaction: phenylacetyl-CoA + isopenicillin N + H2O = CoA + penicillin G + L-2-aminohexanedioate. tmpzr1t_l9r_go_relaxed.owl acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase activity|acyl-CoA:isopenicillin N N-acyltransferase activity|acyl-coenzyme A:isopenicillin N acyltransferase activity|isopenicillin N:acyl-CoA acyltransferase activity|isopenicillin-N acyltransferase activity MetaCyc:2.3.1.164-RXN|EC:2.3.1.164|RHEA:20720 GO:0042319|GO:0045440 molecular_function owl:Class GO:0006178 biolink:NamedThing guanine salvage Any process that generates guanine, 2-amino-6-hydroxypurine, from derivatives of it without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl guanine, xanthine and their nucleoside salvage biological_process owl:Class GO:0018528 biolink:NamedThing iminodiacetate dehydrogenase activity Catalysis of the reaction: iminodiacetate + OH- = H+ + 2 e- + glyoxylate + glycine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0589 molecular_function owl:Class GO:0047794 biolink:NamedThing cyclohexadienyl dehydrogenase activity Catalysis of the reaction: L-arogenate + NAD+ = L-tyrosine + NADH + CO2. tmpzr1t_l9r_go_relaxed.owl pretyrosine dehydrogenase activity|L-arogenate:NAD(+) oxidoreductase activity|L-arogenate:NAD+ oxidoreductase activity|arogenate dehydrogenase activity|L-arogenate:NAD+ oxidoreductase (decarboxylating)|arogenic dehydrogenase activity EC:1.3.1.43|MetaCyc:CYCLOHEXADIENYL-DEHYDROGENASE-RXN|RHEA:12256 molecular_function owl:Class GO:0050301 biolink:NamedThing streptomycin-6-phosphatase activity Catalysis of the reaction: H(2)O + streptomycin 6-phosphate = phosphate + streptomycin. tmpzr1t_l9r_go_relaxed.owl streptomycin 6-phosphate phosphohydrolase activity|streptomycin-6-phosphate phosphohydrolase activity|streptomycin 6-phosphate phosphatase activity|streptomycin-6-P phosphohydrolase activity KEGG_REACTION:R02228|RHEA:10688|MetaCyc:STREPTOMYCIN-6-PHOSPHATASE-RXN|EC:3.1.3.39 molecular_function owl:Class GO:0102352 biolink:NamedThing phosphatidate kinase activity Catalysis of the reaction: ATP + a 1,2-diacyl-sn-glycerol 3-phosphate = ADP + a 1,2-diacyl-sn-glycerol 3-diphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13336 molecular_function owl:Class GO:0015830 biolink:NamedThing diaminopimelate transport The directed movement of diaminopimelate, the anion of 2,6-diaminoheptanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022810 biolink:NamedThing membrane potential driven uniporter activity Enables the active transport of a solute across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged. tmpzr1t_l9r_go_relaxed.owl porter molecular_function owl:Class GO:0080034 biolink:NamedThing host response to induction by symbiont of tumor, nodule or growth in host Any process that results in a change in the state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the formation of an abnormal mass of cells in the host organism, induced by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046088 biolink:NamedThing cytidine biosynthetic process The chemical reactions and pathways resulting in the formation of cytidine, cytosine riboside, a widely distributed nucleoside. tmpzr1t_l9r_go_relaxed.owl cytidine anabolism|cytidine biosynthesis|cytidine synthesis|cytidine formation biological_process owl:Class GO:0030169 biolink:NamedThing low-density lipoprotein particle binding Binding to a low-density lipoprotein particle, a lipoprotein particle that is rich in cholesterol esters and low in triglycerides, is typically composed of APOB100 and APOE, and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. tmpzr1t_l9r_go_relaxed.owl LDL binding molecular_function owl:Class GO:0097370 biolink:NamedThing protein O-GlcNAcylation via threonine The glycosylation of a protein by addition of N-acetylglucosamine via the O3 atom of peptidyl-threonine, forming O3-N-acetylglucosamine-L-threonine. tmpzr1t_l9r_go_relaxed.owl pr 2012-08-06T16:57:37Z biological_process owl:Class GO:0052156 biolink:NamedThing modulation by symbiont of host T-cell mediated immune response Any process in which an organism modulates the frequency, rate or extent of the T-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of T-cell mediated immune response of other organism involved in symbiotic interaction GO:0052295 biological_process owl:Class GO:0008437 biolink:NamedThing thyrotropin-releasing hormone activity The action characteristic of thyrotropin-releasing hormone (TRH), a hormone released by the mammalian hypothalamus into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl thyrotropin releasing hormone activity|TRH activity molecular_function owl:Class GO:0102372 biolink:NamedThing alpha-amyrin 28-monooxygenase activity Catalysis of the reaction: alpha-amyrin + NADPH(4-) + O2 + H+ <=> uvaol + NADP(3-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13500 molecular_function owl:Class GO:0102539 biolink:NamedThing UDP-N-acetyl-alpha-D-fucosamine dehydrogenase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-fucosamine + NAD(P) = UDP-2-acetamido-4-dehydro-2,6-dideoxy-beta-D-glucose + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14769 molecular_function owl:Class GO:0120312 biolink:NamedThing ciliary basal body segregation The process in which the duplicated basal bodies migrate in pairs to the mitotic poles of the nucleus and results in equal distribution in the daughter cells. Ciliary basal body segregation ensures inheritance of the duplicated mitochondrial DNA to the two daughter cells in the Trypanosoma parasites. tmpzr1t_l9r_go_relaxed.owl microtubule basal body segregation|ciliary basal body separation|microtubule basal body separation krc 2021-03-27T04:04:14Z biological_process owl:Class GO:0008569 biolink:NamedThing minus-end-directed microtubule motor activity A motor activity that generates movement along a microtubule toward the minus end, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent minus-end-directed microtubule motor activity|microtubule motor activity, minus-end-directed|kinesin ATP phosphohydrolase (minus-end-directed)|ATP-dependent microtubule motor activity, minus-end-directed|dynein ATPase|minus-end-directed ATP-dependent microtubule motor activity|minus-end-directed kinesin ATPase activity https://github.com/geneontology/go-ontology/issues/18664|https://github.com/geneontology/go-ontology/issues/21289 MetaCyc:3.6.4.5-RXN molecular_function owl:Class GO:0070651 biolink:NamedThing nonfunctional rRNA decay An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system. tmpzr1t_l9r_go_relaxed.owl NRD mah 2009-05-28T02:22:49Z biological_process owl:Class GO:0110080 biolink:NamedThing positive regulation of placenta blood vessel development Any process that activates or increases the frequency, rate or extent of placenta blood vessel development. tmpzr1t_l9r_go_relaxed.owl kmv 2018-02-01T14:55:30Z biological_process owl:Class GO:0036106 biolink:NamedThing peroxisome membrane class-2 targeting sequence binding Binding to a class II peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane in a PEX19-independent manner. tmpzr1t_l9r_go_relaxed.owl class 2 mPTS binding|PEX19-independent mPTS binding Currently identified mPTSs vary greatly in length, and cannot be distinguished by primary structure analysis, suggesting that the peroxisomal sorting information is not contained within a specific amino acid sequence. There do however appear to be two classes of mPTSs: class 1 mPTSs that are bound by PEX19 and imported in a PEX19-dependent manner, and class 2 mPTSs that are not bound by PEX19 and mediate protein import independently of PEX19. The two classes cannot be defined based on their amino acid sequence. bf 2012-01-27T02:02:22Z molecular_function owl:Class GO:0102393 biolink:NamedThing decanoyl-[acp] 2-dehydrogenase activity Catalysis of the reaction: FAD + H+ + a decanoyl-HmqF protein <=> FADH2(2-) + a 2,3-dehydro-decanoyl-HmqF. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13624 molecular_function owl:Class GO:0034920 biolink:NamedThing pyrene dioxygenase activity Catalysis of the reaction: pyrene + 2 H+ + 2 e- + O2 = cis-4,5-dihydroxy-4,5-dihydropyrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0934|EC:1.13.11.- molecular_function owl:Class GO:1990931 biolink:NamedThing mRNA N6-methyladenosine dioxygenase activity Catalysis of the oxidative demethylation of N6-methyladenosine RNA, with concomitant decarboxylation of 2-oxoglutarate and releases oxidized methyl group on N6-methyladenosine as formaldehyde. tmpzr1t_l9r_go_relaxed.owl RNA N6-methyladenosine dioxygenase activity|mRNA N(6)-methyladenine demethylase|mRNA N(6)-methyladenosine dioxygenase activity https://github.com/geneontology/go-ontology/issues/21812 EC:1.14.11.53|RHEA:49520 sp 2016-03-10T08:10:10Z molecular_function owl:Class GO:0097175 biolink:NamedThing 1,6-anhydro-N-acetyl-beta-muramic acid catabolic process The chemical reactions and pathways resulting in the breakdown of 1,6-anhydro-N-acetylmuramic acid, the 1,6-anhydro-derivative of N-acetyl-beta-muramic acid. tmpzr1t_l9r_go_relaxed.owl 1,6-anhydro-N-acetyl-beta-muramate catabolic process|1,6-anhydro-N-acetylmuramate degradation|1,6-anhydro-N-acetylmuramic acid breakdown|1,6-anhydro-N-acetylmuramic acid catabolism|1,6-anhydro-N-acetyl-beta-muramic acid catabolism|1,6-anhydro-N-acetylmuramic acid catabolic process|1,6-anhydro-N-acetyl-beta-muramic acid breakdown|1,6-anhydro-N-acetylmuramate catabolic process|1,6-anhydro-N-acetyl-beta-muramate breakdown|1,6-anhydro-N-acetyl-beta-muramate catabolism|1,6-anhydro-N-acetylmuramate catabolism|1,6-anhydro-N-acetylmuramate breakdown|1,6-anhydro-N-acetyl-beta-muramate degradation|1,6-anhydro-N-acetyl-beta-muramic acid degradation|1,6-anhydro-N-acetylmuramic acid degradation pr 2011-10-07T12:58:32Z biological_process owl:Class GO:0009899 biolink:NamedThing ent-kaurene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-kaur-16-ene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-kaurene synthetase B activity|ent-copalyl-diphosphate diphosphate-lyase (cyclizing)|ent-copalyl-diphosphate diphosphate-lyase (cyclizing, ent-kaurene-forming)|ent-kaurene synthase B activity RHEA:22220|MetaCyc:4.2.3.19-RXN|EC:4.2.3.19|KEGG_REACTION:R05092 molecular_function owl:Class GO:0004989 biolink:NamedThing octopamine receptor activity Combining with the biogenic amine octopamine to initiate a change in cell activity. Octopamine is found in both vertebrates and invertebrates and can have properties both of a hormone and a neurotransmitter and acts as an adrenergic agonist. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0006893 biolink:NamedThing Golgi to plasma membrane transport The directed movement of substances from the Golgi to the plasma membrane in transport vesicles that move from the trans-Golgi network to the plasma membrane, where they fuse and release their contents by exocytosis. tmpzr1t_l9r_go_relaxed.owl Golgi to plasma membrane vesicle-mediated transport biological_process owl:Class GO:0010225 biolink:NamedThing response to UV-C Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm. tmpzr1t_l9r_go_relaxed.owl response to UV-C radiation stimulus|response to UV-C light stimulus|response to germicidal ultraviolet radiation stimulus|response to UVC radiation stimulus|response to shortwave ultraviolet radiation stimulus|response to germicidal ultraviolet light stimulus|response to shortwave ultraviolet light stimulus|response to UVC light stimulus biological_process owl:Class GO:0071740 biolink:NamedThing IgD B cell receptor complex An IgD immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl surface IgD|membrane-bound IgD Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0070433 biolink:NamedThing negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway Any process that stops, prevents, or reduces the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 2 (NOD2) pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of nucleotide-binding oligomerization domain containing 2 signalling pathway|negative regulation of NOD2 signaling pathway biological_process owl:Class GO:0050124 biolink:NamedThing N-acylneuraminate-9-phosphatase activity Catalysis of the reaction: N-acylneuraminate 9-phosphate + H2O = N-acylneuraminate + phosphate. tmpzr1t_l9r_go_relaxed.owl acylneuraminate 9-phosphatase activity|N-acylneuraminic (sialic) acid 9-phosphatase activity|N-acylneuraminic acid 9-phosphate phosphatase activity|N-acylneuraminate-9-phosphate phosphohydrolase activity RHEA:13057|EC:3.1.3.29|Reactome:R-HSA-4084989|MetaCyc:N-ACYLNEURAMINATE-9-PHOSPHATASE-RXN molecular_function owl:Class GO:1990165 biolink:NamedThing single-strand break-containing DNA binding Binding to damaged DNA containing single-strand breaks (SSBs). tmpzr1t_l9r_go_relaxed.owl single-strand break-containing damaged DNA binding|SSB-containing DNA binding pr 2013-08-08T11:16:04Z molecular_function owl:Class GO:0002539 biolink:NamedThing prostaglandin production involved in inflammatory response The synthesis or release of any prostaglandin following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl prostaglandin production involved in acute inflammatory response biological_process owl:Class GO:0050298 biolink:NamedThing stizolobinate synthase activity Catalysis of the reaction: 3,4-dihydroxy-L-phenylalanine + O2 = 5-(L-alanin-3-yl)-2-hydroxy-cis,cis-muconate 6-semialdehyde. tmpzr1t_l9r_go_relaxed.owl 3,4-dihydroxy-L-phenylalanine:oxygen 2,3-oxidoreductase (recyclizing) MetaCyc:STIZOLOBINATE-SYNTHASE-RXN|EC:1.13.11.30|RHEA:18465 molecular_function owl:Class GO:0070180 biolink:NamedThing large ribosomal subunit rRNA binding Binding to large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA. tmpzr1t_l9r_go_relaxed.owl 25S rRNA binding|LSU rRNA binding molecular_function owl:Class GO:0031774 biolink:NamedThing leukotriene receptor binding Binding to a leukotriene receptor. tmpzr1t_l9r_go_relaxed.owl leukotriene receptor ligand molecular_function owl:Class GO:0080171 biolink:NamedThing lytic vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole. tmpzr1t_l9r_go_relaxed.owl lytic vacuole organisation|lytic vacuolar assembly|lytic vacuole biogenesis|lytic vacuole organization and biogenesis dhl 2011-04-25T04:40:46Z biological_process owl:Class GO:0097692 biolink:NamedThing histone H3-K4 monomethylation The modification of histone H3 by addition of one methyl group to lysine at position 4 of the histone. tmpzr1t_l9r_go_relaxed.owl pr 2015-11-05T11:23:15Z biological_process owl:Class GO:0043333 biolink:NamedThing 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity Catalysis of the reaction: 2-octaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 2-octaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity https://github.com/geneontology/go-ontology/issues/15686 EC:2.1.1.201|MetaCyc:2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN Note that the polyprenyl sidechain substrate for these methyltransferases varies in length between species, for example, 6 units in S. cerevisiae, 8 units in E. coli and 10 units in G. suboxidans. Where the length of the substrate polyprenyl chain is unknown, the term '2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity ; GO:0008425' should be used. GO:0102005 molecular_function owl:Class GO:0048312 biolink:NamedThing intracellular distribution of mitochondria Any process that establishes the spatial arrangement of mitochondria within the cell. tmpzr1t_l9r_go_relaxed.owl mitochondrion positioning within cell|mitochondria positioning within cell biological_process owl:Class GO:0035584 biolink:NamedThing calcium-mediated signaling using intracellular calcium source A series of molecular signals in which a cell uses calcium ions released from an intracellular store to convert a signal into a response. tmpzr1t_l9r_go_relaxed.owl calcium signaling using intracellular calcium source|calcium signalling using intracellular calcium source|calcium-mediated signalling using intracellular calcium source bf 2010-10-18T11:01:08Z biological_process owl:Class GO:0050118 biolink:NamedThing N-acetyldiaminopimelate deacetylase activity Catalysis of the reaction: N-acetyl-LL-2,6-diaminopimelate + H(2)O = LL-2,6-diaminopimelate + acetate. tmpzr1t_l9r_go_relaxed.owl N6-acetyl-LL-2,6-diaminoheptanedioate amidohydrolase activity|N-acetyl-LL-diaminopimelate deacylase activity|6-N-acetyl-LL-2,6-diaminoheptanedioate amidohydrolase activity|N-acetyl-L-diaminopimelic acid deacylase activity EC:3.5.1.47|KEGG_REACTION:R02733|MetaCyc:N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN|RHEA:20405 molecular_function owl:Class GO:0047494 biolink:NamedThing serine-phosphoethanolamine synthase activity Catalysis of the reaction: L-serine + CDP-ethanolamine = L-serine-phosphoethanolamine + CMP + H(+). tmpzr1t_l9r_go_relaxed.owl CDP-ethanolamine:L-serine ethanolamine phosphotransferase activity|serine-phosphinico-ethanolamine synthase activity|serine ethanolamine phosphodiester synthase activity|serine ethanolaminephosphotransferase activity|serine ethanolamine phosphate synthetase activity|serinephosphoethanolamine synthase activity RHEA:22656|KEGG_REACTION:R02563|EC:2.7.8.4|MetaCyc:SERINE-PHOSPHOETHANOLAMINE-SYNTHASE-RXN molecular_function owl:Class GO:0000352 biolink:NamedThing trans assembly of SL-containing precatalytic spliceosome Assembly of a spliceosomal complex containing the SL RNA and the pre-mRNA to be joined, as well as all the spliceosomal snRNPs involved in trans leader splicing. Formation of the trans leader spliceosome brings together the quadruple SL/U4/U5/U6 snRNP and the complex of the U2 snRNP with the splice site of the pre-mRNA. tmpzr1t_l9r_go_relaxed.owl trans assembly of spliced leader-containing precatalytic spliceosome biological_process owl:Class GO:0098030 biolink:NamedThing icosahedral viral capsid, neck A region of constriction located below the head and above the tail sheath of viruses with contractile tails (Myoviridae). tmpzr1t_l9r_go_relaxed.owl bm 2012-07-19T14:56:28Z cellular_component owl:Class GO:0033476 biolink:NamedThing indoleacetic acid ester conjugate biosynthetic process The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid amide conjugate, a form of indoleacetic acid covalently bound to an a sugar or polyol through an ester bond. tmpzr1t_l9r_go_relaxed.owl indole acetic acid ester conjugate biosynthetic process|indoleacetic acid ester conjugate synthesis|indole acetic acid ester conjugate biosynthesis|indoleacetic acid ester conjugate anabolism|indoleacetic acid ester conjugate formation|indoleacetic acid ester conjugate biosynthesis|IAA ester conjugate biosynthetic process MetaCyc:PWY-1741 biological_process owl:Class GO:0019361 biolink:NamedThing 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process The chemical reactions and pathways resulting in the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA, a derivative of coenzyme A. tmpzr1t_l9r_go_relaxed.owl 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA synthesis|2'-(5''-triphosphoribosyl)-3'-dephospho-CoA anabolism|2'-(5''-triphosphoribosyl)-3'-dephospho-CoA formation|2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthesis MetaCyc:P2-PWY biological_process owl:Class GO:0050389 biolink:NamedThing uronolactonase activity Catalysis of the reaction: D-glucurono-6,2-lactone + H2O = D-glucuronate. tmpzr1t_l9r_go_relaxed.owl D-glucurono-6,2-lactone lactonohydrolase activity|glucuronolactonase activity EC:3.1.1.19|MetaCyc:URONOLACTONASE-RXN|RHEA:13337 molecular_function owl:Class GO:0033324 biolink:NamedThing choline biosynthetic process via N-monomethylethanolamine The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate N-monomethylethanolamine. tmpzr1t_l9r_go_relaxed.owl choline formation via N-monomethylethanolamine|choline anabolism via N-monomethylethanolamine|choline synthesis via N-monomethylethanolamine|choline biosynthesis via N-monomethylethanolamine MetaCyc:PWY-3542|MetaCyc:PWY-4762 biological_process owl:Class GO:0035533 biolink:NamedThing positive regulation of chemokine (C-C motif) ligand 6 production Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 6 (CCL6). tmpzr1t_l9r_go_relaxed.owl positive regulation of chemokine (C-C motif) ligand 6 secretion|positive regulation of CCL6 production bf 2010-05-07T10:24:21Z GO:0035537 biological_process owl:Class GO:0018741 biolink:NamedThing alkyl sulfatase activity Catalysis of the reaction: dodecyl sulfate + H2O = sulfate + H+ + 1-dodecanol. tmpzr1t_l9r_go_relaxed.owl alkyl sulphatase activity EC:3.1.6.-|UM-BBD_reactionID:r0602 molecular_function owl:Class GO:0032040 biolink:NamedThing small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. tmpzr1t_l9r_go_relaxed.owl SSU processome|small subunit processome cellular_component owl:Class GO:0005000 biolink:NamedThing vasopressin receptor activity Combining with vasopressin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl vasopressin activated calcium mobilizing receptor activity GO:0016931 molecular_function owl:Class GO:0140373 biolink:NamedThing histone H3-K14 ubiquitination The modification of histone H3 by the addition of one or more ubiquitin groups to a lysine residue at position 14 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H3K14 ubiquitination|histone H3 ubiquitination at K14|histone H3-K14 ubiquitylation pg 2019-10-03T15:31:15Z biological_process owl:Class GO:0098605 biolink:NamedThing selenocystathionine beta-synthase activity Catalysis of the reaction: L-Serine + Selenohomocysteine => L-Selenocystathionine + H2O. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408559 dos 2014-04-16T11:07:50Z molecular_function owl:Class GO:1990540 biolink:NamedThing mitochondrial manganese ion transmembrane transport The process in which a manganese ion is transported across a mitochondrial membrane, into or out of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T11:03:09Z biological_process owl:Class GO:0033586 biolink:NamedThing L-phenylalanine biosynthetic process from chorismate via L-arogenate The chemical reactions and pathways resulting in the formation of L-phenylalanine from other compounds, including chorismate, via the intermediate L-arogenate. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine formation from chorismate via L-arogenate|L-phenylalanine biosynthesis from chorismate via L-arogenate|L-phenylalanine anabolism from chorismate via L-arogenate|L-phenylalanine synthesis from chorismate via L-arogenate MetaCyc:PWY-3462 biological_process owl:Class GO:0015010 biolink:NamedThing tetrahydrocorphin metabolic process The chemical reactions and pathways involving tetrahydrocorphins, tetrapyrroles that combine the structural elements of both porphyrins and corrins. tmpzr1t_l9r_go_relaxed.owl tetrahydrocorphin metabolism biological_process owl:Class GO:0015011 biolink:NamedThing nickel-tetrapyrrole coenzyme metabolic process The chemical reactions and pathways involving an enzyme cofactor consisting of a tetrapyrrole structure containing nickel, such as the F-430 cofactor found in methyl-coenzyme M reductase. tmpzr1t_l9r_go_relaxed.owl nickel-tetrapyrrole coenzyme metabolism|coenzyme F430 metabolic process biological_process owl:Class GO:0106147 biolink:NamedThing fraxetin biosynthesis The chemical reactions and pathways resulting in the formation of fraxetin. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-07T18:32:47Z biological_process owl:Class GO:0090060 biolink:NamedThing regulation of metaxylem development Any process that modulates the frequency, rate, or extent of metaxylem development. Metaxylem development is the process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed. tmpzr1t_l9r_go_relaxed.owl tb 2009-08-11T03:14:54Z biological_process owl:Class GO:0140368 biolink:NamedThing decoy receptor complex A receptor complex that recognizes, binds and sequesters a specific receptor ligand to prevent it from binding to its regular receptor. May be soluble or membrane bound. tmpzr1t_l9r_go_relaxed.owl osteoprotegerin complex|osteoclastogenesis inhibitory factor pg 2019-09-13T16:39:24Z cellular_component owl:Class GO:0004118 biolink:NamedThing cGMP-stimulated cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is increased in the presence of cGMP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0072344 biolink:NamedThing rescue of stalled ribosome A process of translational elongation that takes place when a ribosome has stalled during translation, and results in freeing the ribosome from the stalled translation complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/6481|https://github.com/geneontology/go-ontology/issues/22227 mah 2010-11-10T11:54:26Z biological_process owl:Class GO:0071651 biolink:NamedThing positive regulation of chemokine (C-C motif) ligand 5 production Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 5. tmpzr1t_l9r_go_relaxed.owl positive regulation of RANTES production|positive regulation of Regulated upon Activation, Normal T-cell Expressed, and Secreted production|positive regulation of CCL5 production mah 2010-02-12T10:40:19Z biological_process owl:Class GO:0047260 biolink:NamedThing alpha,alpha-trehalose-phosphate synthase (GDP-forming) activity Catalysis of the reaction: GDP-D-glucose + glucose-6-phosphate = alpha,alpha-trehalose 6-phosphate + GDP. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphoglucose-glucose phosphate glucosyltransferase activity|GDP-glucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase activity|GDPglucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase activity|GDPglucose-glucose-phosphate glucosyltransferase activity|trehalose phosphate synthase (GDP-forming) activity|GDP-glucose-glucosephosphate glucosyltransferase activity MetaCyc:2.4.1.36-RXN|EC:2.4.1.36|RHEA:14605 molecular_function owl:Class GO:0052848 biolink:NamedThing inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity Catalysis of the reaction: 3,5-bisdiphosphoinositol-1D-myo-inositol 2,3,4,6-tetrakisphosphate + H2O = 3-diphospho-1D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10976 ai 2011-12-05T11:02:23Z molecular_function owl:Class GO:0085020 biolink:NamedThing protein K6-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is added to a protein. K6-linked ubiquitination is involved in DNA repair. tmpzr1t_l9r_go_relaxed.owl protein K6-linked polyubiquitination jl 2010-06-01T03:05:03Z biological_process owl:Class GO:0031814 biolink:NamedThing P2Y4 nucleotide receptor binding Binding to a P2Y4 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y4 nucleotide receptor ligand molecular_function owl:Class GO:0102769 biolink:NamedThing dihydroceramide glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + a dihydroceramide = UDP + H+ + a D-glucosyl-N-acylsphinganine. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.80|MetaCyc:RXN-7793 molecular_function owl:Class GO:1905575 biolink:NamedThing ganglioside GM3 binding Binding to ganglioside GM3. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T11:17:10Z molecular_function owl:Class GO:0070619 biolink:NamedThing Shc-Grb2-Sos complex A protein complex that contains Grb2, the adaptor protein Shc and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Shc-Grb2-mSos1 complex, EGF stimulated mah 2009-04-29T04:30:00Z cellular_component owl:Class GO:0043431 biolink:NamedThing 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol + S-adenosyl-L-methionine = ubiquinol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 3-demethylubiquinone-9 3-methyltransferase activity|2-octaprenyl-6-hydroxy phenol methylase activity MetaCyc:2.1.1.64-RXN molecular_function owl:Class GO:0010814 biolink:NamedThing substance P catabolic process The chemical reactions and pathways resulting in the breakdown of the neuropeptide substance P. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032089 biolink:NamedThing NACHT domain binding Binding to a NACHT (NAIP, CIITA, HET-E and TP1) domain. The NACHT domain consists of seven distinct conserved motifs, including an ATP/GTPase specific P-loop, a Mg(2+)-binding site and five more specific motifs. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0062182 biolink:NamedThing all-trans retinoic acid 4-hydrolase activity Catalysis of the reaction: all-trans-retinoate + O2 + reduced [NADPH--hemoprotein reductase] = all-trans-(4S)-hydroxyretinoate + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:51492 dph 2019-11-26T18:36:06Z molecular_function owl:Class GO:1990455 biolink:NamedThing PTEN phosphatase complex A phospholipid phosphatase complex that catalyses the hydrolysis of the second messenger PtdIns (3,4,5)P3. Will also dephosphorylate PtdIns(3,4)P2, PtdIns3P, and Ins(1,3,4,5)P4. Dimerization is critical for its lipid phosphatase function. tmpzr1t_l9r_go_relaxed.owl phosphatase and tensin homolog|phosphatase and tensin homolog deleted on chromosome ten homodimer|phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN homodimer An example of this is PTEN in human (P60484) in PMID:24766807 (inferred from direct assay). bhm 2014-08-13T10:21:20Z cellular_component owl:Class GO:0030290 biolink:NamedThing sphingolipid activator protein activity Any of a group of peptide cofactors of enzymes for the lysosomal degradation of sphingolipids. They stimulate various enzymes, including glucosylceramidase, galactosylceramidase, cerebroside-sulfatase, alpha-galactosidase, beta-galactosidase, and sphingomyelin phosphodiesterase. tmpzr1t_l9r_go_relaxed.owl saposin Reactome:R-HSA-1605717 molecular_function owl:Class GO:1902246 biolink:NamedThing cis-abienol biosynthetic process The chemical reactions and pathways resulting in the formation of cis-abienol. tmpzr1t_l9r_go_relaxed.owl cis-abienol biosynthesis|cis-abienol anabolism|cis-abienol formation|cis-abienol synthesis ms 2013-06-20T09:10:02Z biological_process owl:Class GO:0003855 biolink:NamedThing 3-dehydroquinate dehydratase activity Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3-dehydroquinate hydro-lyase (3-dehydroshikimate-forming)|3-dehydroquinase activity|3-dehydroquinate hydro-lyase activity|dehydroquinate dehydratase activity|dehydroquinase activity|5-dehydroquinate hydro-lyase activity|3-dehydroquinate hydrolase activity|5-dehydroquinase activity|DHQase|5-dehydroquinate dehydratase activity EC:4.2.1.10|RHEA:21096|MetaCyc:3-DEHYDROQUINATE-DEHYDRATASE-RXN|KEGG_REACTION:R03084 molecular_function owl:Class GO:0072591 biolink:NamedThing citrate-L-glutamate ligase activity Catalysis of the reaction: ATP + citrate + L-glutamate = ADP + phosphate + beta-citryl-L-glutamate. tmpzr1t_l9r_go_relaxed.owl mah 2011-02-10T03:24:26Z molecular_function owl:Class GO:0015554 biolink:NamedThing tartrate transmembrane transporter activity Enables the transfer of tartrate from one side of a membrane to the other. Tartrate is the anion of 2,3-dihydroxybutanedioic acid, one of the aldaric acids. The L(+) enantiomer occurs widely in plants, especially in grape juice, and in fungi and bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021991 biolink:NamedThing neural plate thickening The process of apical-basal elongation of individual ectodermal cells during the formation of the neural placode. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140674 biolink:NamedThing ATP-dependent histone loader activity Depositing a histone or a histone complex onto DNA. tmpzr1t_l9r_go_relaxed.owl histone loader activity|histone loading activity https://github.com/geneontology/go-ontology/issues/21733 pg 2021-06-29T12:42:57Z molecular_function owl:Class GO:0036322 biolink:NamedThing pancreatic polypeptide secretion The regulated release of pancreatic polypeptide (PP) from a cell. Pancreatic polypeptide is a 36 amino acid polypeptide secreted by islets of Langerhans cells in the pancreas. tmpzr1t_l9r_go_relaxed.owl PP secretion bf 2012-09-04T14:39:03Z biological_process owl:Class GO:1903864 biolink:NamedThing P granule disassembly The disaggregation of a P granule into its constituent components. tmpzr1t_l9r_go_relaxed.owl polar granule disassembly|germline granule disassembly kmv 2015-02-04T15:27:12Z biological_process owl:Class GO:0097512 biolink:NamedThing cardiac myofibril A cardiac myofibril is a myofibril specific to cardiac muscle cells. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T13:04:58Z cellular_component owl:Class GO:0031718 biolink:NamedThing type 1 cannabinoid receptor binding Binding to a type 1 cannabinoid receptor. tmpzr1t_l9r_go_relaxed.owl type 1 cannabinoid receptor ligand molecular_function owl:Class GO:0047634 biolink:NamedThing agmatine N4-coumaroyltransferase activity Catalysis of the reaction: 4-coumaroyl-CoA + agmatine = N-(4-guanidiniumylbutyl)-4-hydroxycinnamamide + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 4-coumaroyl-CoA:agmatine N4-coumaroyltransferase activity|agmatine coumaroyltransferase activity|4-coumaroyl-CoA:agmatine 4-N-coumaroyltransferase activity|p-coumaroyl-CoA-agmatine N-p-coumaroyltransferase activity EC:2.3.1.64|KEGG_REACTION:R01617|MetaCyc:AGMATINE-N4-COUMAROYLTRANSFERASE-RXN|RHEA:13405 molecular_function owl:Class GO:0097246 biolink:NamedThing catechin binding Binding to a catechin, a polyphenolic antioxidant plant metabolite with a flavonoid or flavan-3-ol structure. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-17T03:53:54Z molecular_function owl:Class GO:0102062 biolink:NamedThing alpha-santalene synthase activity Catalysis of the reaction: 2-cis,6-cis-farnesyl diphosphate <=> (+)-alpha-santalene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl RHEA:30463|EC:4.2.3.50|MetaCyc:RXN-10567 molecular_function owl:Class GO:0018429 biolink:NamedThing copper incorporation into copper-sulfur cluster via heptakis-L-histidino tetracopper mu4-sulfide hydroxide The incorporation of copper into a 4Cu-S copper-sulfur cluster via heptakis-L-histidino tetracopper mu4-sulfide hydroxide. tmpzr1t_l9r_go_relaxed.owl copper incorporation into copper-sulphur cluster via heptakis-L-histidino tetracopper mu4-sulphide hydroxide RESID:AA0298 biological_process owl:Class GO:0018428 biolink:NamedThing copper incorporation into copper-sulfur cluster The incorporation of copper into a copper-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl copper incorporation into copper-sulphur cluster biological_process owl:Class GO:0052845 biolink:NamedThing inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity Catalysis of the reaction: inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate + H2O = inositol 1,2,3,4,5,6-hexakisphosphate + phosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10964 ai 2011-12-05T10:59:20Z molecular_function owl:Class GO:0102691 biolink:NamedThing UDP-glucose:benzyladenine 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + N-benzyladenine <=> H+ + benzyladenine-7-N-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4729 molecular_function owl:Class GO:0097736 biolink:NamedThing aerial mycelium formation The process by which hyphae grow in an upward or outward direction from the surface of the substrate; from there, propagative spores develop in or on characteristic structures that are distinctive of some fungal and bacterial species. The species that form an aerial mycelium develop conidiophores at the ends of the aerial hyphae. tmpzr1t_l9r_go_relaxed.owl fertile mycelium formation|aerial hyphal growth pr 2016-10-14T14:25:22Z biological_process owl:Class GO:0004650 biolink:NamedThing polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. tmpzr1t_l9r_go_relaxed.owl pectolase activity|endo-D-galacturonase activity|endogalacturonase activity|endopolygalacturonase activity|poly(1,4-alpha-D-galacturonide) glycanohydrolase activity|pectinase activity|pectin depolymerase activity|pectin hydrolase activity|poly-alpha-1,4-galacturonide glycanohydrolase activity|endo-polygalacturonase activity|pectin polygalacturonase activity EC:3.2.1.15|MetaCyc:RXN-2103 molecular_function owl:Class GO:0021894 biolink:NamedThing cerebral cortex GABAergic interneuron development The process whose specific outcome is the progression of a cerebral cortex GABAergic interneuron over time, from initial commitment to its fate, to the fully functional differentiated cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052833 biolink:NamedThing inositol monophosphate 4-phosphatase activity Catalysis of the reaction: myo-inositol 4-phosphate + H2O = myo-inositol + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol-1(or 4)-monophosphatase activity|myo-inositol-1(or 4)-monophosphatase activity|myo-inositol-1(or 4)-phosphate phosphohydrolase activity RHEA:30735|EC:3.1.3.25|Reactome:R-HSA-1855211|MetaCyc:RXN-10952 ai 2011-11-29T11:02:15Z molecular_function owl:Class GO:0035236 biolink:NamedThing proctolin receptor activity Combining with the neuropeptide proctolin, to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140450 biolink:NamedThing protein targeting to Golgi apparatus The process of targeting specific proteins to the Golgi apparatus. Usually requires an organelle-specific protein sequence motif or a protein modification (for example a palmitoylation). tmpzr1t_l9r_go_relaxed.owl pg 2020-04-08T13:10:10Z biological_process owl:Class GO:0031869 biolink:NamedThing prostacyclin receptor binding Binding to a prostacyclin receptor. tmpzr1t_l9r_go_relaxed.owl prostacyclin receptor ligand|prostanoid IP receptor binding molecular_function owl:Class GO:0007624 biolink:NamedThing ultradian rhythm The specific actions or reactions of an organism that recur with a regularity more frequent than every 24 hours. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031219 biolink:NamedThing levanase activity Catalysis of the random hydrolysis of 2,6-beta-D-fructofuranosidic linkages in 2,6-beta-D-fructans (levans) containing more than 3 fructose units. tmpzr1t_l9r_go_relaxed.owl 2,6-beta-D-fructan fructanohydrolase activity|levan hydrolase activity EC:3.2.1.65|MetaCyc:3.2.1.65-RXN molecular_function owl:Class GO:0019601 biolink:NamedThing toluene oxidation via 2-hydroxytoluene The degradation of toluene to form pyruvate and acetaldehyde; the first step in the pathway is the oxidation of toluene to form 2-hydroxytoluene (o-cresol). tmpzr1t_l9r_go_relaxed.owl MetaCyc:TOLUENE-DEG-2-OH-PWY biological_process owl:Class GO:0008921 biolink:NamedThing lipopolysaccharide-1,6-galactosyltransferase activity Catalysis of the reaction: UDP-galactose + lipopolysaccharide = UDP + 1,6 alpha-D-galactosyl-lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl LPS-1,6-galactosyltransferase activity molecular_function owl:Class GO:0035616 biolink:NamedThing histone H2B conserved C-terminal lysine deubiquitination A histone deubiquitination process in which a ubiquitin monomer is removed from a conserved lysine residue in the C-terminus of histone H2B. The conserved lysine residue is K119 in fission yeast, K123 in budding yeast, or K120 in mammals. tmpzr1t_l9r_go_relaxed.owl mammalian H2B K120 deubiquitination|budding yeast H2B K123 deubiquitination|fission yeast H2B K119 deubiquitination bf 2010-12-03T10:36:44Z biological_process owl:Class GO:0033904 biolink:NamedThing dextranase activity Catalysis of the endohydrolysis of 1,6-alpha-D-glucosidic linkages in dextran. tmpzr1t_l9r_go_relaxed.owl alpha-1,6-glucan-6-glucanohydrolase activity|endo-dextranase activity|dextran hydrolase activity|dextranase DL 2 activity|DL 2|1,6-alpha-D-glucan 6-glucanohydrolase activity|endodextranase activity|alpha-D-1,6-glucan-6-glucanohydrolase activity MetaCyc:3.2.1.11-RXN|EC:3.2.1.11 molecular_function owl:Class GO:0043592 biolink:NamedThing exosporium The outermost layer of a bacterial endospore, which is loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid. tmpzr1t_l9r_go_relaxed.owl perispore|exospore|epispore cellular_component owl:Class GO:0055015 biolink:NamedThing ventricular cardiac muscle cell development The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ. tmpzr1t_l9r_go_relaxed.owl ventricular heart muscle cell development|ventricular cardiomyocyte development biological_process owl:Class GO:0060814 biolink:NamedThing posterior mRNA localization involved in anterior/posterior axis specification Any process in which a mRNA is transported to and maintained in the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl posterior mRNA localisation involved in anterior/posterior axis specification dph 2009-08-07T09:54:54Z biological_process owl:Class GO:0039695 biolink:NamedThing DNA-templated viral transcription A transcription process that uses a viral DNA as a template. tmpzr1t_l9r_go_relaxed.owl VZ:1942 bf 2013-10-28T13:25:20Z biological_process owl:Class GO:0050689 biolink:NamedThing negative regulation of defense response to virus by host Any host process that results in the inhibition of antiviral immune response mechanisms, thereby facilitating viral replication. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down-regulation of antiviral response by host|negative regulation by host of antiviral response|downregulation of antiviral response by host|down regulation of antiviral response by host|inhibition of antiviral response by host|negative regulation of antiviral response by host biological_process owl:Class GO:0018616 biolink:NamedThing trihydroxytoluene dioxygenase activity Catalysis of the reaction: 2,3,5-trihydroxytoluene + O2 = 2,4,6-trioxoheptanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0093|MetaCyc:R305-RXN molecular_function owl:Class GO:0071306 biolink:NamedThing cellular response to vitamin E Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to DL-alpha-tocopheryl acetate|cellular response to DL-alpha-tocopherol acetate|cellular response to O-Acetyl-alpha-tocopherol mah 2009-12-10T04:35:58Z biological_process owl:Class GO:0023002 biolink:NamedThing nuclear migration to embryo sac poles Migration of the nuclei of the two-nucleate embryo sac to opposite poles of the cell. tmpzr1t_l9r_go_relaxed.owl nucleus migration to female gametophyte poles|nucleus migration to megagametophyte poles|nuclear migration to female gametophyte poles|nucleus migration to embryo sac poles|nuclear migration to megagametophyte poles biological_process owl:Class GO:0034827 biolink:NamedThing 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene extradiol dioxygenase activity Catalysis of the reaction: 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene + O2 = 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1171|EC:1.13.11.- molecular_function owl:Class GO:0010336 biolink:NamedThing gibberellic acid homeostasis Any biological process involved in the maintenance of an internal steady state of gibberellic acid; may involve transport, biosynthesis, catabolism or conjugation. tmpzr1t_l9r_go_relaxed.owl gibberellin homeostasis biological_process owl:Class GO:0070181 biolink:NamedThing small ribosomal subunit rRNA binding Binding to small ribosomal subunit RNA (SSU rRNA), a constituent of the small ribosomal subunit. In S. cerevisiae, this is the 18S rRNA. tmpzr1t_l9r_go_relaxed.owl SSU rRNA binding|18S rRNA binding molecular_function owl:Class GO:0035398 biolink:NamedThing helper T cell enhancement of T cell mediated immune response Positive regulation of a T cell mediated immune response mediated via cytokine production by a helper T cell. tmpzr1t_l9r_go_relaxed.owl helper T cell enhancement of T cell mediated immunity|provision of T cell help to T cell bf 2010-03-23T10:40:00Z biological_process owl:Class GO:0042452 biolink:NamedThing deoxyguanosine biosynthetic process The chemical reactions and pathways resulting in the formation of deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose. tmpzr1t_l9r_go_relaxed.owl deoxyguanosine biosynthesis|deoxyguanosine formation|deoxyguanosine synthesis|deoxyguanosine anabolism biological_process owl:Class GO:0062177 biolink:NamedThing radial spoke assembly The aggregation, arrangement and bonding together of a set of components to form the radial spoke, a protein complex that links the outer microtubule doublet of the ciliary or flagellum axoneme with the sheath that surrounds the central pair of microtubules. tmpzr1t_l9r_go_relaxed.owl dph 2019-11-20T17:50:08Z biological_process owl:Class GO:0000254 biolink:NamedThing C-4 methylsterol oxidase activity Catalysis of the reaction: 4,4-dimethyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)H + H(+) + O2 = 4-beta-hydroxymethyl-4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl 4-methylsterol oxidase activity|4,4-dimethyl-5alpha-cholest-7-en-3beta-ol,NAD(P)H:oxygen oxidoreductase (hydroxylating)|methylsterol monooxygenase activity|4,4-dimethyl-5alpha-cholest-7-en-3beta-ol,hydrogen-donor:oxygen oxidoreductase (hydroxylating)|methylsterol hydroxylase activity EC:1.14.18.9|Reactome:R-HSA-194669|MetaCyc:1.14.13.72-RXN|RHEA:55220|Reactome:R-HSA-194641 Note that zymosterol is cholesta-8,24-dien-3-ol. molecular_function owl:Class GO:0140704 biolink:NamedThing 3',2'-cyclic GMP-AMP binding Binding to 3',2' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 3',5' and 2',5' linkages. tmpzr1t_l9r_go_relaxed.owl 3',2' cyclic-GMP-AMP binding|3',2'-cyclic GAMP binding|3',2'-cGAMP binding https://github.com/geneontology/go-ontology/issues/21980 pg 2021-08-27T05:44:28Z molecular_function owl:Class GO:0034926 biolink:NamedThing pyrene-4,5-epoxide hydrolase activity Catalysis of the reaction: pyrene-4,5-oxide + H2O = trans-4,5-dihydroxy-4,5-dihydropyrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0942 molecular_function owl:Class GO:0050242 biolink:NamedThing pyruvate, phosphate dikinase activity Catalysis of the reaction: ATP + phosphate + pyruvate = AMP + diphosphate + 2 H(+) + phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl pyruvate,phosphate dikinase activity|pyruvate-phosphate dikinase (phosphorylating)|pyruvate-inorganic phosphate dikinase activity|pyruvate-phosphate dikinase activity|pyruvic-phosphate dikinase activity|orthophosphate dikinase pyruvate|pyruvate-phosphate ligase activity|PPDK|ATP:pyruvate, phosphate phosphotransferase activity|pyruvic-phosphate ligase activity|pyruvate, Pi dikinase activity|pyruvate,orthophosphate dikinase activity EC:2.7.9.1|RHEA:10756|KEGG_REACTION:R00206|MetaCyc:PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN molecular_function owl:Class GO:0003854 biolink:NamedThing 3-beta-hydroxy-delta5-steroid dehydrogenase activity Catalysis of the reaction: a 3-beta-hydroxy-delta(5)-steroid + NAD+ = a 3-oxo-delta(5)-steroid + NADH + H(+). tmpzr1t_l9r_go_relaxed.owl 3beta-HSDH|3beta-hydroxy-delta5-steroid dehydrogenase activity|3beta-hydroxy-5-ene steroid dehydrogenase activity|progesterone reductase activity|3beta-hydroxy-5-ene-steroid dehydrogenase activity|3beta-hydroxy-delta5-C27-steroid oxidoreductase|5-ene-3-beta-hydroxysteroid dehydrogenase activity|3beta-hydroxy-5-ene-steroid oxidoreductase activity|3-beta-hydroxy-D5-steroid dehydrogenase activity|steroid-delta5-3beta-ol dehydrogenase activity|3beta-hydroxy steroid dehydrogenase/isomerase activity|3beta-hydroxy-delta5-C27-steroid dehydrogenase/isomerase activity|delta5-3beta-hydroxysteroid dehydrogenase activity|3-beta-hydroxy-5-ene steroid dehydrogenase activity|3beta-hydroxy-delta5-steroid:NAD+ 3-oxidoreductase activity Reactome:R-HSA-196372|MetaCyc:1.1.1.145-RXN|Reactome:R-HSA-196350|RHEA:24076|Reactome:R-HSA-193816|Reactome:R-HSA-192097|Reactome:R-HSA-193789|EC:1.1.1.145 molecular_function owl:Class GO:0070436 biolink:NamedThing Grb2-EGFR complex A protein complex that contains the epidermal growth factor receptor (EGFR) and Grb2, and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Grb2-Egfr complex, EGF stimulated cellular_component owl:Class GO:0046258 biolink:NamedThing anaerobic 2,4,6-trinitrotoluene catabolic process The chemical reactions and pathways resulting in the breakdown of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic 2,4,6-trinitrotoluene degradation|anaerobic 2,4,6-trinitrotoluene catabolism|anaerobic 2,4,6-trinitrotoluene breakdown biological_process owl:Class GO:0018975 biolink:NamedThing anaerobic 2,4,6-trinitrotoluene metabolic process The chemical reactions and pathways involving 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic 2,4,6-trinitrotoluene metabolism UM-BBD_pathwayID:tnt2 biological_process owl:Class GO:0061736 biolink:NamedThing engulfment of target by autophagosome The membrane invagination process by which an autophagosomal membrane surrounds an object that will be degraded by macroautophagy. tmpzr1t_l9r_go_relaxed.owl dph 2015-09-14T14:10:24Z biological_process owl:Class GO:0017095 biolink:NamedThing heparan sulfate 6-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + heparan sulfate = adenosine 3',5'-bisphosphate + heparan sulfate 6-O-sulfate; results in 6-O-sulfation of glucosamine residues in heparan sulfate. tmpzr1t_l9r_go_relaxed.owl heparin 6-O-sulfotransferase activity|heparan sulphate 6-O-sulphotransferase activity Reactome:R-HSA-2076419|EC:2.8.2.- molecular_function owl:Class GO:0071188 biolink:NamedThing protocadherin-alpha-v7-protocadherin-gamma-a1 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdha7-Pcdhga1 complex mah 2009-11-23T04:23:25Z cellular_component owl:Class GO:0102394 biolink:NamedThing 4-hydroxy-L-isoleucine dehydrogenase activity Catalysis of the reaction: (2S,3R,4S)-4-hydroxy-L-isoleucine + NAD <=> (2S,3R)-2-amino-3-methyl-4-ketopentanoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13637 molecular_function owl:Class GO:0047123 biolink:NamedThing quinoline-4-carboxylate 2-oxidoreductase activity Catalysis of the reaction: A + H(2)O + quinoline-4-carboxylate = 2-oxo-1,2-dihydroquinoline-4-carboxylate + AH(2). tmpzr1t_l9r_go_relaxed.owl quinoline-4-carboxylate:acceptor 2-oxidoreductase (hydroxylating)|quinoline-4-carboxylic acid 2-oxidoreductase activity RHEA:14949|EC:1.3.99.19|KEGG_REACTION:R05183|MetaCyc:1.3.99.19-RXN molecular_function owl:Class GO:2001126 biolink:NamedThing positive regulation of translational frameshifting Any process that activates or increases the frequency, rate or extent of translational frameshifting. tmpzr1t_l9r_go_relaxed.owl dph 2011-10-12T05:52:30Z biological_process owl:Class GO:0044590 biolink:NamedThing iron-sulfur-molybdenum cofactor binding Binding to iron molybdenum cofactor, the cofactor located at the active site of the molybdenum nitrogenase. tmpzr1t_l9r_go_relaxed.owl FeMoco binding|FeMo co binding jl 2012-04-26T02:27:39Z molecular_function owl:Class GO:1900633 biolink:NamedThing pentadecane metabolic process The chemical reactions and pathways involving pentadecane. tmpzr1t_l9r_go_relaxed.owl pentadecane metabolism tt 2012-05-21T06:51:34Z biological_process owl:Class GO:0033140 biolink:NamedThing negative regulation of peptidyl-serine phosphorylation of STAT protein Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein. tmpzr1t_l9r_go_relaxed.owl inhibition of serine phosphorylation of STAT3 protein|downregulation of serine phosphorylation of STAT3 protein|negative regulation of serine phosphorylation of STAT3 protein|down regulation of serine phosphorylation of STAT3 protein|down-regulation of serine phosphorylation of STAT3 protein GO:1903262 biological_process owl:Class GO:0010284 biolink:NamedThing lariciresinol reductase activity Catalysis of the reaction: lariciresinol + NADPH + H+ = secoisolariciresinol + NADP+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8679|MetaCyc:RXN-8684 molecular_function owl:Class GO:1904551 biolink:NamedThing cellular response to arachidonic acid Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arachidonic acid stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-13T20:53:31Z biological_process owl:Class GO:1990485 biolink:NamedThing anaerobic lactate catabolic process The chemical reactions and pathways resulting in the breakdown of lactate (2-hydroxypropanoic acid) in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic lactic acid catabolic process tt 2014-09-20T16:48:06Z biological_process owl:Class GO:0036511 biolink:NamedThing trimming of first mannose on A branch The removal of the first alpha-1,2-linked mannose from the A-chain of a glycoprotein oligosaccharide in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl conversion of (Man)9(GlcNAc)2 to (Man)8A(GlcNAc)2|glycoprotein mannose trimming on A branch|conversion of M9 to M8A Consider also annotating to 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T14:14:03Z biological_process owl:Class GO:0018848 biolink:NamedThing pinocarveol isomerase activity Catalysis of the reaction: pinocarveol = carveol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0715|EC:5.5.1.- molecular_function owl:Class GO:0009039 biolink:NamedThing urease activity Catalysis of the reaction: urea + H2O = CO2 + 2 NH3. tmpzr1t_l9r_go_relaxed.owl urea amidohydrolase activity RHEA:20557|UM-BBD_reactionID:r0120|MetaCyc:UREASE-RXN|EC:3.5.1.5 molecular_function owl:Class GO:0140506 biolink:NamedThing endoplasmic reticulum-autophagosome adaptor activity The binding activity of a molecule that brings together an ER membrane and an autophagosome during reticulophagy. tmpzr1t_l9r_go_relaxed.owl autophagosome-ER anchor|ER- autophagosome anchor|autophagosome-endoplasmic reticulum anchor https://github.com/geneontology/go-ontology/issues/19873 pg 2020-08-27T11:04:43Z molecular_function owl:Class GO:0061803 biolink:NamedThing posterior cell cortex The region that lies just beneath the plasma membrane in the part of a cell that is closest to the posterior as defined by the developing, or existing, anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl dph 2016-11-06T22:55:45Z cellular_component owl:Class GO:0062076 biolink:NamedThing acyl-CoA delta5-desaturase activity Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = delta5-acyl-CoA + acceptor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl acyl-CoA delta(5)-desaturase activity|acyl-CoA D5-desaturase activity|acyl-CoA (8-3)-desaturase EC:1.14.19.44|RHEA:46424 dph 2018-09-24T15:33:59Z molecular_function owl:Class GO:0008725 biolink:NamedThing DNA-3-methyladenine glycosylase activity Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site. tmpzr1t_l9r_go_relaxed.owl DNA-3-methyladenine glycosylase I activity|deoxyribonucleate 3-methyladenine glycosidase I|DNA-3-methyladenine glycosidase I activity|alkylated-DNA glycohydrolase (releasing methyladenine and methylguanine)|DNA glycosidase I activity|3-methyladenine DNA glycosylase I MetaCyc:3.2.2.20-RXN|EC:3.2.2.20|MetaCyc:3.2.2.21-RXN|EC:3.2.2.21 molecular_function owl:Class GO:0032181 biolink:NamedThing dinucleotide repeat insertion binding Binding to a double-stranded DNA region containing a dinucleotide repeat insertion or a deletion resulting in unpaired dinucleotide repeats. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019930 biolink:NamedThing cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid peptidyl-aspartate ester biosynthetic process from peptidyl-aspartic acid The modification of peptidyl-aspartic acid to form peptidyl-cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid aspartate ester, typical of the barley lipid transfer protein 1. tmpzr1t_l9r_go_relaxed.owl cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid peptidyl-aspartate ester synthesis from peptidyl-aspartic acid|cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid peptidyl-aspartate ester anabolism from peptidyl-aspartic acid|cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid peptidyl-aspartate ester formation from peptidyl-aspartic acid RESID:AA0316 biological_process owl:Class GO:0042696 biolink:NamedThing menarche The beginning of the menstrual cycle; the first menstrual cycle in an individual. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Menarche Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0050204 biolink:NamedThing oxalomalate lyase activity Catalysis of the reaction: 3-oxalomalate = glyoxylate + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl 3-oxalomalate glyoxylate-lyase activity|3-oxalomalate glyoxylate-lyase (oxaloacetate-forming) MetaCyc:OXALOMALATE-LYASE-RXN|EC:4.1.3.13|RHEA:22032|KEGG_REACTION:R00477 molecular_function owl:Class GO:0016457 biolink:NamedThing dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome The aggregation, arrangement and bonding together of proteins on DNA to form the complex that mediates dosage compensation on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl dosage compensation complex assembly during dosage compensation by hyperactivation of X chromosome biological_process owl:Class GO:0018580 biolink:NamedThing nitronate monooxygenase activity Catalysis of the reaction: ethylnitronate + O(2) = acetaldehyde + nitrite. tmpzr1t_l9r_go_relaxed.owl nitronate:oxygen 2-oxidoreductase (nitrite-forming) activity|2-nitropropane dioxygenase activity EC:1.13.12.16|MetaCyc:2-NITROPROPANE-DIOXYGENASE-RXN|RHEA:28767 Where non-covalently bound FMN is used as the cofactor, see instead 'nitronate monooxygenase (FMN-linked) activity ; GO:0036434'. molecular_function owl:Class GO:0034869 biolink:NamedThing 2,4,4-trimethyl-3-oxopentanoyl-CoA thioesterase activity Catalysis of the reaction: 2,4,4-trimethyl-3-oxopentanoyl-CoA + OH- = 2,4,4-trimethyl-3-oxopentanoate + CoASH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1307 molecular_function owl:Class GO:0102319 biolink:NamedThing 2-deoxystreptamine N-acetyl-D-glucosaminyltransferase activity Catalysis of the reaction: 2-deoxystreptamine(2+) + UDP-N-acetyl-alpha-D-glucosamine <=> H+ + 2'-N-acetylparomamine(2+) + UDP(3-). tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.283|MetaCyc:RXN-13122|RHEA:33947 molecular_function owl:Class GO:0052868 biolink:NamedThing protein-lysine lysyltransferase activity Catalysis of the reaction: protein-lysine + protein-lysine = protein N6-(lysyl)-L-lysine + protein. This reaction is the addition of lysine group from one protein to a lysine residue in a second protein, producing N6-(lysyl)-L-lysine. tmpzr1t_l9r_go_relaxed.owl ai 2012-01-11T03:05:27Z molecular_function owl:Class GO:0043757 biolink:NamedThing adenosylcobinamide-phosphate synthase activity Catalysis of the reactions: ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate, and ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide. tmpzr1t_l9r_go_relaxed.owl AdoCbi-P synthase activity|CbiB|adenosylcobyric acid:(R)-1-aminopropan-2-yl phosphate ligase (ADP-forming) RHEA:21896|MetaCyc:RXN-6261|EC:6.3.1.10 molecular_function owl:Class GO:0046178 biolink:NamedThing D-gluconate biosynthetic process The chemical reactions and pathways resulting in the formation of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl D-gluconate synthesis|D-gluconate anabolism|D-gluconate formation|D-gluconate biosynthesis biological_process owl:Class GO:0019521 biolink:NamedThing D-gluconate metabolic process The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose. tmpzr1t_l9r_go_relaxed.owl D-gluconate metabolism biological_process owl:Class GO:0051680 biolink:NamedThing 6-alpha-maltosylglucose biosynthetic process The chemical reactions and pathways resulting in the formation of 6-alpha-maltosylglucose, also known as isopanose. tmpzr1t_l9r_go_relaxed.owl isopanose biosynthetic process|isopanose biosynthesis biological_process owl:Class GO:1990828 biolink:NamedThing hepatocyte dedifferentiation The process in which a hepatocyte (specialized epithelial cell of the liver) loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-20T14:14:57Z biological_process owl:Class GO:0033419 biolink:NamedThing CUA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CUA codon. tmpzr1t_l9r_go_relaxed.owl CTA codon-amino acid adaptor activity|leucine tRNA Note that in the standard genetic code, CTA codes for leucine. molecular_function owl:Class GO:0018808 biolink:NamedThing trans-4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate hydratase-aldolase activity Catalysis of the reaction: trans-4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate + H2O = pyruvate + 1-hydroxy-2-naphthaldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0484 molecular_function owl:Class GO:0046026 biolink:NamedThing precorrin-4 C11-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-4 = S-adenosyl-L-homocysteine + precorrin 5. tmpzr1t_l9r_go_relaxed.owl CobM|S-adenosyl-L-methionine:precorrin-4 C11 methyltransferase activity EC:2.1.1.133|MetaCyc:2.1.1.133-RXN|RHEA:22012 molecular_function owl:Class GO:1990723 biolink:NamedThing cytoplasmic periphery of the nuclear pore complex Cytoplasm situated in close proximity to a nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl associated with the nuclear pore https://github.com/geneontology/go-ontology/issues/21774 sl 2015-04-06T19:26:54Z cellular_component owl:Class GO:0062096 biolink:NamedThing kinetochore disassembly The disaggregation of a kinetochore into its constituent components. tmpzr1t_l9r_go_relaxed.owl dph 2018-11-26T16:34:55Z biological_process owl:Class GO:0051383 biolink:NamedThing kinetochore organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. tmpzr1t_l9r_go_relaxed.owl kinetochore organisation|kinetochore organization and biogenesis biological_process owl:Class GO:1990326 biolink:NamedThing collagen type XXVIII trimer A collagen homotrimer of alpha1(XXVIII) chains. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-16T23:15:28Z cellular_component owl:Class GO:0061652 biolink:NamedThing FAT10 conjugating enzyme activity Isoenergetic transfer of FAT10 from one protein to another via the reaction X-FAT10 + Y -> Y-FAT10 + X, where both the X-FAT10 and Y-FAT10 linkages are thioester bonds between the C-terminal amino acid of FAT10 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:21:50Z molecular_function owl:Class GO:0050373 biolink:NamedThing UDP-arabinose 4-epimerase activity Catalysis of the reaction: UDP-L-arabinose = UDP-alpha-D-xylose. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose 4-epimerase activity|UDP-D-xylose-4-epimerase activity|UDP-L-arabinose 4-epimerase activity|uridine diphosphoarabinose epimerase activity|UDParabinose 4-epimerase activity|uridine 5'-diphosphate-D-xylose 4-epimerase activity|UDP arabinose epimerase activity RHEA:11320|KEGG_REACTION:R01473|MetaCyc:UDP-ARABINOSE-4-EPIMERASE-RXN|EC:5.1.3.5 molecular_function owl:Class GO:0120199 biolink:NamedThing cone photoreceptor outer segment The outer segment of a vertebrate cone photoreceptor that contains membrane discs that are contiguous with the ciliary membrane and containing opsin photoreceptor proteins. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-07T22:23:28Z cellular_component owl:Class GO:0071069 biolink:NamedThing alpha4-beta1 integrin-thrombospondin-1 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-1. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-THBS1 complex mah 2009-11-03T04:05:35Z cellular_component owl:Class GO:0016913 biolink:NamedThing follicle-stimulating hormone activity The action characteristic of follicle-stimulating hormone (FSH), a gonadotrophic glycoprotein hormone secreted, in mammals, by the anterior pituitary gland. Upon receptor binding, FSH stimulates growth of Graafian follicles in the ovaries in females, and stimulates the epithelium of the seminiferous tubules to increase spermatogenesis. tmpzr1t_l9r_go_relaxed.owl FSH activity|follicle stimulating hormone activity|follitropin activity molecular_function owl:Class GO:0008661 biolink:NamedThing 1-deoxy-D-xylulose-5-phosphate synthase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). tmpzr1t_l9r_go_relaxed.owl 1-deoxyxylulose-5-phosphate synthase activity|DXP-synthase activity|pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase (decarboxylating)|DOXP synthase activity|1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) activity RHEA:12605|KEGG_REACTION:R05636|EC:2.2.1.7|MetaCyc:DXS-RXN molecular_function owl:Class GO:0047363 biolink:NamedThing triglucosylalkylacylglycerol sulfotransferase activity Catalysis of the reaction: alpha-D-glucosyl-1,6-alpha-D-glucosyl-1,6-alpha-D-glucosyl-1,3-1-O-alkyl-2-O-acylglycerol + 3'-phosphoadenosine 5'-phosphosulfate = 6-sulfo-alpha-D-glucosyl-1,6-alpha-D-glucosyl-1,6-alpha-D-glucosyl-1,3-1-O-alkyl-2-O-acylglycerol + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl triglucosylalkylacylglycerol sulphotransferase activity|3'-phosphoadenylyl-sulfate:triglucosyl-1-O-alkyl-2-O-acylglycerol 6-sulfotransferase activity|triglucosylmonoalkylmonoacyl sulfotransferase activity RHEA:13273|MetaCyc:2.8.2.19-RXN|EC:2.8.2.19 molecular_function owl:Class GO:0031770 biolink:NamedThing growth hormone-releasing hormone receptor binding Binding to a growth hormone-releasing hormone receptor. tmpzr1t_l9r_go_relaxed.owl growth hormone-releasing hormone receptor ligand molecular_function owl:Class GO:1902966 biolink:NamedThing positive regulation of protein localization to early endosome Any process that activates or increases the frequency, rate or extent of protein localization to early endosome. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein localisation in early endosome|activation of protein localisation to early endosome|up-regulation of protein localization in early endosome|up-regulation of protein localization to early endosome|up regulation of protein localisation to early endosome|upregulation of protein localization to early endosome|upregulation of protein localisation to early endosome|up regulation of protein localisation in early endosome|activation of protein localization in early endosome|activation of protein localisation in early endosome|up regulation of protein localization to early endosome|up regulation of protein localization in early endosome|up-regulation of protein localisation to early endosome|positive regulation of protein localisation to early endosome|activation of protein localization to early endosome|upregulation of protein localisation in early endosome|upregulation of protein localization in early endosome|positive regulation of protein localization in early endosome|up-regulation of protein localisation in early endosome sjp 2014-05-06T09:28:30Z biological_process owl:Class GO:0042712 biolink:NamedThing paternal behavior Male behaviors associated with the care and rearing offspring. tmpzr1t_l9r_go_relaxed.owl paternal behaviour biological_process owl:Class GO:0102203 biolink:NamedThing brassicasterol glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + brassicasterol <=> UDP(3-) + 3-O-beta-D-glucosyl-brassicasterol + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.173|RHEA:61840|MetaCyc:RXN-12125 molecular_function owl:Class GO:0102575 biolink:NamedThing 3-oxo-dodecanoyl-ACP hydrolase activity Catalysis of the reaction: H2O + a 3-oxo-dodecanoyl-[acp] = 3-oxododecanoate + H+ + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15281 molecular_function owl:Class GO:1901982 biolink:NamedThing maltose binding Binding to maltose. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-13T18:17:19Z molecular_function owl:Class GO:1990698 biolink:NamedThing palmitoleoyltransferase activity Catalysis of the transfer of a palmitoleyl group, a 16-carbon monounsaturated fatty acid (C16:1), to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl sp 2015-03-13T08:58:25Z molecular_function owl:Class GO:0098989 biolink:NamedThing NMDA selective glutamate receptor signaling pathway A series of molecular signals initiated by glutamate binding to an NMDA-selective glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007451 biolink:NamedThing dorsal/ventral lineage restriction, imaginal disc Formation and/or maintenance of a lineage boundary between dorsal and ventral compartments that cells cannot cross, thus separating the populations of cells in each compartment. tmpzr1t_l9r_go_relaxed.owl dorsal-ventral lineage restriction, imaginal disc|dorsoventral lineage restriction, imaginal disc biological_process owl:Class GO:0010815 biolink:NamedThing bradykinin catabolic process The chemical reactions and pathways resulting in the breakdown of the peptide bradykinin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033110 biolink:NamedThing Cvt vesicle membrane Either of the two lipid bilayers surrounding a Cvt vesicle, a vesicle that functions in the cytoplasm-to-vacuole targeting (Cvt) pathway. tmpzr1t_l9r_go_relaxed.owl cytoplasm to vacuole targeting vesicle membrane|cytoplasm-to-vacuole targeting vesicle membrane cellular_component owl:Class GO:0050367 biolink:NamedThing tyrosine-arginine ligase activity Catalysis of the reaction: L-arginine + L-tyrosine + ATP = L-tyrosyl-L-arginine + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl L-tyrosine:L-arginine ligase (AMP-forming)|kyotorphin synthetase activity|tyrosyl-arginine synthase activity|kyotorphin-synthesizing enzyme activity|kyotorphin synthase activity KEGG_REACTION:R00735|RHEA:15345|EC:6.3.2.24|MetaCyc:TYROSINE--ARGININE-LIGASE-RXN molecular_function owl:Class GO:0004400 biolink:NamedThing histidinol-phosphate transaminase activity Catalysis of the reaction: L-histidinol-phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl L-histidinol-phosphate:2-oxoglutarate aminotransferase activity|IAP transaminase activity|histidinol-phosphate aminotransferase activity|L-histidinol phosphate aminotransferase activity|histidinol phosphate aminotransferase activity|glutamic-imidazoleacetol phosphate transaminase activity|histidine:imidazoleacetol phosphate transaminase activity|imidazoleacetol phosphate transaminase activity|imidazole acetol-phosphate transaminase activity|imidazolylacetolphosphate transaminase activity|imidazolylacetolphosphate aminotransferase activity MetaCyc:HISTAMINOTRANS-RXN|RHEA:23744|EC:2.6.1.9 molecular_function owl:Class GO:0039512 biolink:NamedThing suppression by virus of host protein tyrosine kinase activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protein tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host protein tyrosine kinase activity|down-regulation by virus of host protein tyrosine kinase activity|inhibition by virus of host protein tyrosine kinase activity|downregulation by virus of host protein tyrosine kinase activity bf 2011-06-16T02:27:26Z biological_process owl:Class GO:0015599 biolink:NamedThing ATPase-coupled L-glutamine transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + glutamine(out) -> ADP + phosphate + glutamine(in). tmpzr1t_l9r_go_relaxed.owl glutamine porter activity|ATPase-coupled glutamine transmembrane transporter activity|glutamine-importing ATPase activity MetaCyc:ABC-12-RXN|EC:7.4.2.1 molecular_function owl:Class GO:0035626 biolink:NamedThing juvenile hormone mediated signaling pathway A series of molecular signals initiated by the binding of juvenile hormone to a receptor, and ending with regulation of cell state or activity. tmpzr1t_l9r_go_relaxed.owl juvenile hormone mediated signalling pathway|juvenile hormone-mediated signaling pathway bf 2010-12-08T04:45:25Z biological_process owl:Class GO:0036052 biolink:NamedThing protein localization to uropod A process in which a protein is transported to, or maintained in, a uropod. A uropod is a membrane projection with related cytoskeletal components at the trailing edge of a migrating cell. tmpzr1t_l9r_go_relaxed.owl protein localisation to uropod bf 2011-12-12T10:45:26Z biological_process owl:Class GO:0004450 biolink:NamedThing isocitrate dehydrogenase (NADP+) activity Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|isocitrate (NADP) dehydrogenase activity|NADP(+)-IDH activity|NADP(+)-linked isocitrate dehydrogenase activity|isocitrate:NADP+ oxidoreductase (decarboxylating)|triphosphopyridine nucleotide-linked isocitrate dehydrogenase activity|NADP-dependent isocitrate dehydrogenase activity|NADP-linked isocitrate dehydrogenase activity|NADP(+)-ICDH activity|NADP isocitric dehydrogenase activity|NADP-specific isocitrate dehydrogenase activity|isocitrate dehydrogenase (NADP-dependent) activity|isocitrate dehydrogenase (NADP) activity|NADP-dependent isocitric dehydrogenase activity|dual-cofactor-specific isocitrate dehydrogenase activity Reactome:R-HSA-450984|EC:1.1.1.42|Reactome:R-HSA-389540|RHEA:19629|MetaCyc:ISOCITDEH-RXN|Reactome:R-HSA-389550 molecular_function owl:Class GO:1905640 biolink:NamedThing response to acetaldehyde Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetaldehyde stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2016-11-04T15:07:18Z biological_process owl:Class GO:1990875 biolink:NamedThing nucleoplasmic side of nuclear pore The side of the nuclear pore complex (NPC) that faces the nucleoplasm. tmpzr1t_l9r_go_relaxed.owl nucleoplasmic side of nuclear pore complex|nucleoplasmic side of NPC|nucleoplasmic side of nucleopore sl 2015-10-01T21:32:22Z cellular_component owl:Class GO:0004030 biolink:NamedThing aldehyde dehydrogenase [NAD(P)+] activity Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl aldehyde:NAD(P)+ oxidoreductase activity|ALDH EC:1.2.1.5|Reactome:R-HSA-5696080|Reactome:R-HSA-5692283|Reactome:R-HSA-6808464|MetaCyc:ALDEHYDE-DEHYDROGENASE-NADP+-RXN molecular_function owl:Class GO:0060320 biolink:NamedThing rejection of self pollen The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the rejection of the self pollen by cells in the stigma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0150052 biolink:NamedThing regulation of postsynapse assembly Any process that modulates the frequency, rate or extent of postsynapse assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynapse. tmpzr1t_l9r_go_relaxed.owl bc 2018-05-08T16:38:55Z biological_process owl:Class GO:0034847 biolink:NamedThing naphthyl-2-hydroxymethyl-succinyl-CoA dehydrogenase activity Catalysis of the reaction: naphthyl-2-hydroxymethyl-succinyl-CoA = naphthyl-2-oxomethyl-succinyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1260 molecular_function owl:Class GO:0034881 biolink:NamedThing citrazinate hydrolase activity Catalysis of the reaction: citrazinate + H2O = cis-aconitamide. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1343 molecular_function owl:Class GO:0047880 biolink:NamedThing erythrulose reductase activity Catalysis of the reaction: D-threitol + NADP(+) = D-erythrulose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl D-erythrulose reductase activity|erythritol:NADP+ oxidoreductase activity RHEA:18005|EC:1.1.1.162|MetaCyc:ERYTHRULOSE-REDUCTASE-RXN|KEGG_REACTION:R08573 molecular_function owl:Class GO:0035648 biolink:NamedThing circadian mating behavior The fluctuation in mating behavior that occurs over an approximately 24 hour cycle. tmpzr1t_l9r_go_relaxed.owl circadian mating behaviour|circadian mating rhythm bf 2011-01-25T10:20:05Z biological_process owl:Class GO:0102092 biolink:NamedThing 5-diphosphoinositol pentakisphosphate 3-kinase activity Catalysis of the reaction: 5-diphospho-1D-myo-inositol pentakisphosphate + ATP = 3,5-bisdiphosphoinositol-1D-myo-inositol 2,3,4,6-tetrakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10979|EC:2.7.4.24 molecular_function owl:Class GO:0102587 biolink:NamedThing cyanidin 3-O-[2''-O-(2''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-[6''-O-(malonyl) glucoside] sinapoylglucose glucosyltransferase activity Catalysis of the reaction: cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-[6''-O-(malonyl) glucoside + 1-O-sinapoyl-beta-D-glucose <=> cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(2-O-sinapoyl-beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside) + trans-sinapate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15333 molecular_function owl:Class GO:0140334 biolink:NamedThing lipopolysaccharide localization to cell outer membrane A process in which a lipopolysaccharide is transported to the cell outer membrane. tmpzr1t_l9r_go_relaxed.owl LPS localization to cell outer membrane pg 2019-05-13T12:23:36Z biological_process owl:Class GO:0090618 biolink:NamedThing DNA clamp unloading The process of removing the PCNA complex from DNA when Okazaki fragments are completed or the replication fork terminates. tmpzr1t_l9r_go_relaxed.owl PCNA unloading tb 2014-10-29T12:57:05Z biological_process owl:Class GO:0047581 biolink:NamedThing 4-methyleneglutamate-ammonia ligase activity Catalysis of the reaction: 4-methylene-L-glutamate + ATP + NH(4)(+) = 4-methylene-L-glutamine + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 4-methyleneglutamine synthetase activity|4-methylene-L-glutamate:ammonia ligase (AMP-forming) MetaCyc:4-METHYLENEGLUTAMATE--AMMONIA-LIGASE-RXN|RHEA:13853|KEGG_REACTION:R02711|EC:6.3.1.7 molecular_function owl:Class GO:0071289 biolink:NamedThing cellular response to nickel ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to nickel mah 2009-12-10T04:07:31Z biological_process owl:Class GO:0050634 biolink:NamedThing phloroisovalerophenone synthase activity Catalysis of the reaction: isovaleryl-CoA + 3 malonyl-CoA = 4 CoASH + 3 CO2 + 3-methyl-1-(2,4,6-trihydroxyphenyl)butan-1-one. tmpzr1t_l9r_go_relaxed.owl isovaleryl-CoA:malonyl-CoA acyltransferase activity|valerophenone synthase activity|3-methyl-1-(trihydroxyphenyl)butan-1-one synthase activity RHEA:23572|EC:2.3.1.156|MetaCyc:2.3.1.156-RXN molecular_function owl:Class GO:0044081 biolink:NamedThing modulation by symbiont of host nitric oxide-mediated signal transduction Any process in which a symbiont organism modulates the rate, frequency or extent of nitric oxide mediated signal transduction in its host organism. Nitric oxide mediated signal transduction is a series of molecular signals mediated by the detection of nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl modulation of host nitric oxide-mediated signal transduction by symbiont|modulation of host nitric oxide-mediated signaling by symbiont|modulation of host nitric oxide-mediated signalling by symbiont|modulation by symbiont of host nitric oxide mediated signal transduction|regulation by symbiont of host nitric oxide-mediated signal transduction biological_process owl:Class GO:0034669 biolink:NamedThing integrin alpha4-beta7 complex An integrin complex that comprises one alpha4 subunit and one beta7 subunit. tmpzr1t_l9r_go_relaxed.owl alpha4-beta7 integrin complex|ITGA4-ITGB7 complex cellular_component owl:Class GO:0047001 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase activity Catalysis of the reaction: NAD+ + 2-dehydro-3-deoxy-D-gluconate = NADH + (4S)-4,6-dihydroxy-2,5-dioxohexanoate. tmpzr1t_l9r_go_relaxed.owl 2-keto-3-deoxy-D-gluconate (3-deoxy-D-glycero-2,5-hexodiulosonic acid) dehydrogenase activity|2-keto-3-deoxygluconate dehydrogenase activity|2-dehydro-3-deoxy-D-gluconate:NAD+ 5-oxidoreductase activity|2-keto-3-deoxygluconate 5-dehydrogenase activity|2-keto-3-deoxygluconate (nicotinamide adenine dinucleotide (phosphate)) dehydrogenase activity EC:1.1.1.127|MetaCyc:1.1.1.127-RXN|RHEA:24232 molecular_function owl:Class GO:0047049 biolink:NamedThing (R)-2-hydroxy-fatty acid dehydrogenase activity Catalysis of the reaction: (R)-2-hydroxystearate + NAD(+) = 2-oxostearate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (R)-2-hydroxystearate:NAD+ oxidoreductase activity|(R)-2-hydroxy-fatty-acid dehydrogenase activity|D-2-hydroxy fatty acid dehydrogenase activity|2-hydroxy fatty acid oxidase RHEA:15949|KEGG_REACTION:R03021|EC:1.1.1.98|MetaCyc:1.1.1.98-RXN molecular_function owl:Class GO:0047122 biolink:NamedThing quinaldate 4-oxidoreductase activity Catalysis of the reaction: A + H(2)O + quinaldate = AH(2) + kynurenate. tmpzr1t_l9r_go_relaxed.owl quinoline-2-carboxylate:acceptor 4-oxidoreductase (hydroxylating)|quinaldic acid 4-oxidoreductase activity EC:1.3.99.18|MetaCyc:1.3.99.18-RXN|KEGG_REACTION:R03687|RHEA:16697 molecular_function owl:Class GO:0052624 biolink:NamedThing 2-phytyl-1,4-naphthoquinone methyltransferase activity Catalysis of the reaction: demethylphylloquinone + S-adenosyl-L-methionine = phylloquinone + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:2-phytyl-1,4-naphthoquinone methyltransferase activity|SA methyltransferase activity|S-adenosyl-L-methionine:demethylphylloquinone methyltransferase activity|demethylphylloquinone methyltransferase activity|salicylic acid methyltransferase activity|S-adenosyl-L-methionine:salicylate carboxyl methyltransferase activity|salicylate methyltransferase activity MetaCyc:RXN-7569|KEGG_REACTION:R06859|MetaCyc:RXN-6723 ai 2010-08-26T12:00:06Z molecular_function owl:Class GO:0004805 biolink:NamedThing trehalose-phosphatase activity Catalysis of the reaction: trehalose 6-phosphate + H2O = trehalose + phosphate. tmpzr1t_l9r_go_relaxed.owl trehalose 6-phosphate phosphatase activity|trehalose 6-phosphatase activity|trehalose-6-phosphate phosphohydrolase activity|trehalose phosphatase activity EC:3.1.3.12|MetaCyc:TREHALOSEPHOSPHA-RXN|RHEA:23420 molecular_function owl:Class GO:0018767 biolink:NamedThing 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate + H2O = cis-2-hydroxypenta-2,4-dienoate + isobutyrate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0399 molecular_function owl:Class GO:1990841 biolink:NamedThing promoter-specific chromatin binding Binding to a section of chromatin that is associated with gene promoter sequences of DNA. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-28T14:48:29Z molecular_function owl:Class GO:0031694 biolink:NamedThing alpha-2A adrenergic receptor binding Binding to an alpha-2A adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-2A adrenergic receptor ligand molecular_function owl:Class GO:0102635 biolink:NamedThing 11-deoxycorticosterone reductase activity Catalysis of the reaction: 11-deoxycorticosterone + NADH + H+ <=> 4-pregnen-20,21-diol-3-one + NAD. tmpzr1t_l9r_go_relaxed.owl RHEA:47716|MetaCyc:RXN-15607 molecular_function owl:Class GO:0008481 biolink:NamedThing sphinganine kinase activity Catalysis of the reaction: ATP + sphinganine = ADP + sphinganine 1-phosphate. tmpzr1t_l9r_go_relaxed.owl sphingosine kinase activity|sphingosine kinase (phosphorylating)|ATP:sphinganine 1-phosphotransferase activity|dihydrosphingosine kinase (phosphorylating)|dihydrosphingosine kinase activity MetaCyc:SPHINGANINE-KINASE-RXN|RHEA:15465|Reactome:R-HSA-428214|EC:2.7.1.91 GO:0001728 molecular_function owl:Class GO:0052001 biolink:NamedThing type IV pili-dependent localized adherence to host Attachment of bacterial clusters to the surface of the host in a type IV pili dependent manner. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052737 biolink:NamedThing pyruvate dehydrogenase (quinone) activity Catalysis of the reaction: a ubiquinone + H2O + pyruvate = a ubiquinol + acetate + CO2. tmpzr1t_l9r_go_relaxed.owl pyruvate dehydrogenase activity|pyruvate:ubiquinone oxidoreductase activity|pyruvate:ubiquinone-8-oxidoreductase activity|pyruvic dehydrogenase activity MetaCyc:RXN-11496|RHEA:27405|KEGG_REACTION:R03145|EC:1.2.5.1 molecular_function owl:Class GO:0052738 biolink:NamedThing oxidoreductase activity, acting on the aldehyde or oxo group of donors, with a quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.2.5.- molecular_function owl:Class GO:0031837 biolink:NamedThing substance K receptor binding Binding to a substance K receptor. tmpzr1t_l9r_go_relaxed.owl neurokinin-A receptor binding|substance K receptor ligand molecular_function owl:Class GO:0031834 biolink:NamedThing neurokinin receptor binding Binding to a neurokinin receptor. tmpzr1t_l9r_go_relaxed.owl neurokinin receptor ligand molecular_function owl:Class GO:0071603 biolink:NamedThing endothelial cell-cell adhesion The attachment of an endothelial cell to another endothelial cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-04T05:21:30Z biological_process owl:Class GO:0097362 biolink:NamedThing MCM8-MCM9 complex A hexameric protein complex composed of MCM8 and MCM9 and involved in homologous recombination repair following DNA interstrand cross-links. tmpzr1t_l9r_go_relaxed.owl pr 2012-07-20T02:10:12Z cellular_component owl:Class GO:0035362 biolink:NamedThing protein-DNA ISRE complex assembly The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex, in which the complex is formed through interaction of the protein(s) with a interferon-stimulated response element (ISRE) in the DNA. tmpzr1t_l9r_go_relaxed.owl protein-DNA interferon-stimulated response element complex assembly bf 2010-03-10T10:40:09Z biological_process owl:Class GO:0017178 biolink:NamedThing diphthine-ammonia ligase activity Catalysis of the reaction: ATP + diphthine + NH(4)(+) = ADP + diphthamide + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl diphthamide synthetase activity|diphthamide synthase activity|diphthine:ammonia ligase (ADP-forming) KEGG_REACTION:R03613|RHEA:19753|Reactome:R-HSA-5358475|EC:6.3.1.14|MetaCyc:DIPHTINE--AMMONIA-LIGASE-RXN molecular_function owl:Class GO:0034914 biolink:NamedThing trinitrophenol hydride denitratase activity Catalysis of the reaction: trinitrophenol hydride Meisenheimer complex = 2,4-dinitrophenol + nitrite. Trinitrophenol is also known as TNP. tmpzr1t_l9r_go_relaxed.owl TNP hydride denitratase activity|2,4,6-trinitrophenol hydride denitratase activity EC:1.7.99.-|UM-BBD_reactionID:r1448 molecular_function owl:Class GO:0044203 biolink:NamedThing host cell nuclear lamina The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a host cell nucleus, composed of lamin filaments. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T11:11:56Z cellular_component owl:Class GO:0061260 biolink:NamedThing mesonephric mesangial cell differentiation The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesangial cells of the mesonephros as it progresses from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-30T02:25:08Z biological_process owl:Class GO:0050383 biolink:NamedThing uracil dehydrogenase activity Catalysis of the reaction: uracil + acceptor = barbiturate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.17.99.4|MetaCyc:URACIL-DEHYDROGENASE-RXN|RHEA:22752 molecular_function owl:Class GO:0036150 biolink:NamedThing phosphatidylserine acyl-chain remodeling Remodeling the acyl chains of phosphatidylserine, through sequential deacylation and re-acylation reactions, to generate phosphatidylserine containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl phosphatidyl-L-serine acyl-chain remodeling bf 2012-03-14T01:35:44Z biological_process owl:Class GO:0050992 biolink:NamedThing dimethylallyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate. tmpzr1t_l9r_go_relaxed.owl DPP biosynthesis|dimethylallyl diphosphate anabolism|dimethylallyl diphosphate biosynthesis|dimethylallyl diphosphate formation|dimethylallyl diphosphate synthesis|DPP biosynthetic process|dimethylallyl pyrophosphate biosynthetic process|dimethylallyl pyrophosphate biosynthesis biological_process owl:Class GO:0004852 biolink:NamedThing uroporphyrinogen-III synthase activity Catalysis of the reaction: hydroxymethylbilane = H(2)O + uroporphyrinogen III. tmpzr1t_l9r_go_relaxed.owl uroporphyrinogen III cosynthase activity|URO-synthase activity|hydroxymethylbilane hydro-lyase (cyclizing; uroporphyrinogen-III-forming)|porphobilinogenase activity|uroporphyrinogen isomerase activity|uroporphyrinogen-III cosynthase activity|uroporphyrinogen-III cosynthetase activity|hydroxymethylbilane hydro-lyase (cyclizing) activity RHEA:18965|Reactome:R-HSA-189488|MetaCyc:UROGENIIISYN-RXN|KEGG_REACTION:R03165|EC:4.2.1.75 molecular_function owl:Class GO:0098824 biolink:NamedThing peptidyl-cysteine sulfation The sulfation of peptidyl-cysteine to form S-sulfo-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0171 biological_process owl:Class GO:0047904 biolink:NamedThing fructose 5-dehydrogenase activity Catalysis of the reaction: D-fructose + A = 5-dehydro-D-fructose + AH(2). tmpzr1t_l9r_go_relaxed.owl D-fructose:(acceptor) 5-oxidoreductase activity|D-fructose dehydrogenase activity|D-fructose:acceptor 5-oxidoreductase activity|fructose 5-dehydrogenase (acceptor) KEGG_REACTION:R00873|MetaCyc:FRUCTOSE-5-DEHYDROGENASE-RXN|RHEA:22304|EC:1.1.99.11 molecular_function owl:Class GO:0033481 biolink:NamedThing galacturonate biosynthetic process The chemical reactions and pathways resulting in the formation of galacturonate, the anion of galacturonic acid. tmpzr1t_l9r_go_relaxed.owl galacturonate anabolism|galacturonate formation|galacturonate biosynthesis|galacturonate synthesis biological_process owl:Class GO:0036350 biolink:NamedThing mannose-specific flocculation The non-sexual aggregation of single-celled organisms mediated by the binding of cell wall proteins on one cell to mannose residues on the other. tmpzr1t_l9r_go_relaxed.owl cell-cell adhesion involved in mannose-specific flocculation bf 2012-09-19T10:57:34Z GO:0098612 biological_process owl:Class GO:0052774 biolink:NamedThing glucosyl-N-acetylglucosamine glucosaminidase activity Catalysis of the reaction: glucosyl-N-acetylglucosamine + H2O = glucosamine + N-acetylglucosamine. tmpzr1t_l9r_go_relaxed.owl ai 2011-10-03T12:01:05Z molecular_function owl:Class GO:0004070 biolink:NamedThing aspartate carbamoyltransferase activity Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl aspartate transcarbamoylase activity|L-aspartate transcarbamoylase activity|aspartate transcarbamylase activity|carbamoylaspartotranskinase activity|ATCase activity|carbamoyl-phosphate:L-aspartate carbamoyltransferase activity|aspartate carbamyltransferase activity|aspartic carbamyltransferase activity|aspartic acid transcarbamoylase activity|carbamylaspartotranskinase activity|aspartic transcarbamylase activity|L-aspartate transcarbamylase activity Reactome:R-HSA-73573|EC:2.1.3.2|RHEA:20013|KEGG_REACTION:R01397|MetaCyc:ASPCARBTRANS-RXN molecular_function owl:Class GO:0047871 biolink:NamedThing disulfoglucosamine-6-sulfatase activity Catalysis of the reaction: N(2),6-disulfo-D-glucosamine + H(2)O = N-sulfo-D-glucosamine + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl 6,N-disulfoglucosamine 6-O-sulfohydrolase activity|disulphoglucosamine-6-sulphatase activity|N,6-O-disulfo-D-glucosamine 6-sulfohydrolase activity|N-sulfoglucosamine-6-sulfatase activity EC:3.1.6.11|MetaCyc:DISULFOGLUCOSAMINE-6-SULFATASE-RXN|KEGG_REACTION:R03216|RHEA:15517 molecular_function owl:Class GO:0061799 biolink:NamedThing cyclic pyranopterin monophosphate synthase activity Catalysis of the reaction: (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-17809|EC:4.6.1.17|RHEA:49580 dph 2016-10-06T14:36:56Z molecular_function owl:Class GO:0102944 biolink:NamedThing medicagenate UDP-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose(2-) + medicagenate <=> UDP(3-) + a medicagenate monoglucoside. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9035 molecular_function owl:Class GO:0001717 biolink:NamedThing conversion of seryl-tRNAsec to selenocys-tRNAsec The modification process that results in the conversion of serine, carried by a specialized tRNA(ser) (which can read a UGA anticodon), to selenocysteine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015272 biolink:NamedThing ATP-activated inward rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by an inwardly-rectifying voltage-gated channel, where the inward rectification is due to a voltage-dependent block of the channel pore by ATP. An inwardly rectifying current-voltage relation is one where at any given driving force the inward flow of K+ ions exceeds the outward flow for the opposite driving force. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5683209 molecular_function owl:Class GO:0140525 biolink:NamedThing antipodal site The pole of the kinetoplast associated with kinetoplast DNA replication. The antipodal sites flank the kinetoplast DNA disk and are positioned approximately 180 degrees apart. In Trypanosoma brucei and Crithidia fasciculata, minicircles are attached at antipodal sites and they contain enzymes that catalyse some of the later reactions in minicircle replication. tmpzr1t_l9r_go_relaxed.owl antipodal zone https://github.com/geneontology/go-ontology/issues/20036 pg 2020-09-29T08:01:53Z cellular_component owl:Class GO:0110062 biolink:NamedThing negative regulation of angiotensin-activated signaling pathway Any process that stops, prevents, or reduces the frequency, rate or extent of the angiotensin-activated signaling pathway. tmpzr1t_l9r_go_relaxed.owl kmv 2017-10-26T17:42:17Z biological_process owl:Class GO:0061121 biolink:NamedThing regulation of positive chemotaxis to cAMP by DIF-2 Any process that modulates the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-2. DIF-2 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:16:21Z biological_process owl:Class GO:0018937 biolink:NamedThing nitroglycerin metabolic process The chemical reactions and pathways involving nitroglycerin, a well-known nitrate ester and an important component of dynamite and other propellants. Toxic to algae, invertebrate, and vertebrates. tmpzr1t_l9r_go_relaxed.owl NG metabolic process|nitroglycerin metabolism|NG metabolism MetaCyc:P201-PWY|UM-BBD_pathwayID:ng biological_process owl:Class GO:0051996 biolink:NamedThing squalene synthase activity Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. tmpzr1t_l9r_go_relaxed.owl squalene synthetase activity EC:2.5.1.21|MetaCyc:RXN66-281 Note that the two reactions performed by EC:2.5.1.21 are represented in GO by 'farnesyl-diphosphate farnesyltransferase activity ; GO:0004310' and 'squalene synthase activity ; GO:0051996'. ai 2010-07-16T05:10:24Z molecular_function owl:Class GO:0046491 biolink:NamedThing L-methylmalonyl-CoA metabolic process The chemical reactions and pathways involving L-methylmalonyl-CoA, the L-enantiomer of 2-carboxypropanoyl-CoA. S-methylmalonyl-CoA is an intermediate in the beta oxidation of odd-numbered fatty acids in animals. tmpzr1t_l9r_go_relaxed.owl L-methylmalonyl-CoA metabolism biological_process owl:Class GO:0061812 biolink:NamedThing cyclic ADP-ribose hydrolase Catalysis of the reaction: cyclic ADP-ribose + H20 = ADP-ribose (ADPR). tmpzr1t_l9r_go_relaxed.owl dph 2016-11-11T13:32:43Z molecular_function owl:Class GO:1990112 biolink:NamedThing RQC complex A multiprotein complex that forms a stable complex with large ribosomal subunits (60S in eukaryotes and 50S in prokaryotes) containing stalled polypeptides and triggers their degradation (ribosomal quality control). In budding yeast, this complex includes Cdc48p, Rkr1p, Tae2p, Rqc1p, Npl4p and Ufd1p proteins. tmpzr1t_l9r_go_relaxed.owl ribosome quality control complex|ribosome-bound quality control complex rb 2013-05-31T21:42:43Z cellular_component owl:Class GO:0098024 biolink:NamedThing virus tail, fiber The fibrous region of the virus tail used to scan, recognize and attach to the host cell. tmpzr1t_l9r_go_relaxed.owl bacteriophage tail fiber For tailed bacteriophages, fibers typically bind to particular Lipopolysaccharide (LPS), polysaccharide or protein receptors on the cell surface. bm 2012-07-19T14:14:50Z cellular_component owl:Class GO:0072671 biolink:NamedThing mitochondria-associated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of proteins transported from mitochondria and targeted to cytoplasmic proteasomes for degradation as a response to oxidative stress conditions. tmpzr1t_l9r_go_relaxed.owl mitochondrion-associated protein catabolic process|mitochondria-associated protein catabolic process|mitochondria-associated protein degradation|MAD mah 2011-02-18T11:53:28Z biological_process owl:Class GO:0036026 biolink:NamedThing protein C inhibitor-PLAT complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and tissue-type plasminogen activator (PLAT); formation of the complex inhibits the serine protease activity of tissue-type plasminogen activator. tmpzr1t_l9r_go_relaxed.owl protein C inhibitor-tissue-type plasminogen activator complex|SERPINA5-PLAT complex|serpin A5-PLAT complex|plasma serine protease inhibitor-PLAT complex|protein C inhibitor-tPA complex|PCI-PLAT complex bf 2011-10-19T01:30:56Z cellular_component owl:Class GO:0046027 biolink:NamedThing phospholipid:diacylglycerol acyltransferase activity Catalysis of the reaction: phospholipid + 1,2-diacylglycerol = lysophospholipid + triacylglycerol. tmpzr1t_l9r_go_relaxed.owl PDAT activity|phospholipid:1,2-diacyl-sn-glycerol O-acyltransferase activity RHEA:14057|MetaCyc:2.3.1.158-RXN|EC:2.3.1.158 molecular_function owl:Class GO:1990456 biolink:NamedThing mitochondrion-endoplasmic reticulum membrane tethering The attachment of a mitochondrion and an endoplasmic reticulum via molecular tethers that physically bridge their respective membranes and attach them to each other. The tethering may facilitate exchange of metabolites between the organelles. tmpzr1t_l9r_go_relaxed.owl mitochondrion-endoplasmic reticulum tethering|mitochondrion-endoplasmic reticulum attachment|mitochondrion-ER membrane tethering|mitochondrion-ER attachment|mitochondrion-ER tethering mcc 2014-08-14T13:32:30Z biological_process owl:Class GO:0071177 biolink:NamedThing MAML2-RBP-Jkappa-ICN3 complex A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML2-RBP-Jkappa-Notch3 complex mah 2009-11-23T02:48:56Z cellular_component owl:Class GO:0106117 biolink:NamedThing acidocalcisome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an acidocalcisome. An acidocalcisome is an electron-dense acidic membrane-bounded organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations. tmpzr1t_l9r_go_relaxed.owl volutin granule organization|acidocalcisome biogenesis|acidocalcisome organisation|metachromatic granule organization|polyphosphate vacuole organization|acidocalcisome organization and biogenesis hjd 2018-04-19T17:18:01Z biological_process owl:Class GO:0008915 biolink:NamedThing lipid-A-disaccharide synthase activity Catalysis of the reaction: 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + UDP-2,3-bis(3-hydroxytetradecanoyl)-D-glucosamine = 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-(1->6)-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine:2,3-bis-(3-hydroxytetradecanoyl)-beta-D-glucosaminyl-1-phosphate 2,3-bis(3-hydroxytetradecanoyl)-glucosaminyltransferase activity KEGG_REACTION:R04606|EC:2.4.1.182|RHEA:22668|MetaCyc:LIPIDADISACCHARIDESYNTH-RXN molecular_function owl:Class GO:0032443 biolink:NamedThing regulation of ergosterol biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070002 biolink:NamedThing glutamic-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism involving a glutamate/glutamine catalytic dyad. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050266 biolink:NamedThing rosmarinate synthase activity Catalysis of the reaction: caffeoyl-CoA + 3-(3,4-dihydroxyphenyl)lactate = CoA + rosmarinate. tmpzr1t_l9r_go_relaxed.owl rosmarinic acid synthase activity|caffeoyl-coenzyme A:3,4-dihydroxyphenyllactic acid caffeoyltransferase activity|caffeoyl-CoA:3-(3,4-dihydroxyphenyl)lactate 2'-O-caffeoyl-transferase activity|4-coumaroyl-CoA:4-hydroxyphenyllactic acid 4-coumaroyl transferase activity MetaCyc:ROSMARINATE-SYNTHASE-RXN|EC:2.3.1.140|RHEA:22344 molecular_function owl:Class GO:0050509 biolink:NamedThing N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity Catalysis of the reaction: N-acetyl-alpha-D-glucosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP-alpha-D-glucuronate = beta-D-glucuronosyl-(1,4)-N-acetyl-alpha-D-glucosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosaminylproteoglycan beta-1,4-glucuronyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-b-glucuronosyltransferase activity|UDP-alpha-D-glucuronate:N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-glucuronosyl-proteoglycan 4-beta-glucuronosyltransferase activity|heparan glucuronyltransferase II activity Reactome:R-HSA-3656257|MetaCyc:2.4.1.225-RXN|Reactome:R-HSA-9036285|EC:2.4.1.225|Reactome:R-HSA-2076392|RHEA:20908|Reactome:R-HSA-2022856|Reactome:R-HSA-3656267|Reactome:R-HSA-9036289 molecular_function owl:Class GO:0031824 biolink:NamedThing type 1E serotonin receptor binding Binding to a type 1E serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 1E serotonin receptor ligand|5-hydroxytryptamine 1E receptor binding molecular_function owl:Class GO:0002111 biolink:NamedThing BRCA2-BRAF35 complex A heterodimeric complex of BRCA2 and BRAF35 (BRCA2-associated factor 35). The BRCA2-BRAF35 complex is often associated with condensed chromatin during mitosis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033265 biolink:NamedThing choline binding Binding to choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0039616 biolink:NamedThing T=2 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=2 symmetry. The T=2 capsid is composed of 12 pentameric dimers. tmpzr1t_l9r_go_relaxed.owl VZ:838 The T=2 symmetry is an non-official appellation; strictly speaking the capsid has a T=1 symmetry with each unit composed of a homodimer. bf 2012-07-18T02:01:55Z cellular_component owl:Class GO:0090555 biolink:NamedThing phosphatidylethanolamine flippase activity Catalysis of the movement of phosphatidylethanolamine from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled phosphatidylethanolamine transporter activity|phosphatidylethanolamine flippase activity (exoplasmic to cytosolic leaftlet)|phosphatidylethanolamine-translocating ATPase activity|ATP-dependent phosphatidylethanolamine transporter activity RHEA:66132 Nomenclature note. Flippases and floppases are ATP-dependent transbilayer lipid translocators. According to an extensively used, though not universal, nomenclature, they catalyze lipid transfer towards the inward monolayer (flippases) or towards the outward monolayer (floppases). Scramblases are ATP-independent, non-selective, inducing non-specific transbilayer movements across the membrane. The direction of the translocation should be taken into account for annotation (from the exoplasmic to the cytosolic leaftlet of a membrane). tb 2013-10-24T16:07:20Z molecular_function owl:Class GO:1901471 biolink:NamedThing positive regulation of syringal lignin catabolic process Any process that activates or increases the frequency, rate or extent of syringal lignin catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of syringal lignin catabolism|upregulation of syringal lignin catabolic process|activation of syringal lignin breakdown|up-regulation of S-lignin catabolic process|up regulation of S-lignin catabolic process|positive regulation of syringal lignin catabolism|activation of syringal lignin catabolism|up regulation of syringal lignin degradation|up-regulation of syringal lignin catabolic process|activation of syringal lignin degradation|activation of syringal lignin catabolic process|upregulation of syringal lignin catabolism|positive regulation of syringal lignin degradation|upregulation of syringal lignin degradation|up regulation of syringal lignin breakdown|up-regulation of syringal lignin breakdown|positive regulation of syringal lignin breakdown|upregulation of S-lignin catabolic process|activation of S-lignin catabolic process|up-regulation of syringal lignin catabolism|upregulation of syringal lignin breakdown|positive regulation of S-lignin catabolic process|up regulation of syringal lignin catabolic process|up-regulation of syringal lignin degradation tt 2012-10-02T14:42:39Z biological_process owl:Class GO:0015381 biolink:NamedThing high-affinity sulfate transmembrane transporter activity Enables the secondary active high affinity transfer of sulfate from one side of a membrane to the other. Secondary active transport is the transfer of a solute across a membrane, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. In high-affinity transport the transporter is able to bind thesolute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity sulfate transmembrane transporter activity|high affinity sulphate permease activity|high affinity sulfate permease activity molecular_function owl:Class GO:0016163 biolink:NamedThing nitrogenase activity Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate. tmpzr1t_l9r_go_relaxed.owl iron-iron nitrogenase activity|vanadium-iron nitrogenase activity|molybdenum-iron nitrogenase activity|reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing) activity MetaCyc:NITROGENASE-RXN|RHEA:21448|EC:1.18.6.1|UM-BBD_enzymeID:e0395 molecular_function owl:Class GO:0102373 biolink:NamedThing uvaol dehydrogenase activity Catalysis of the reaction: uvaol + NADPH + O2 + H+ <=> ursolic aldehyde + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.126|MetaCyc:RXN-13501 molecular_function owl:Class GO:0034536 biolink:NamedThing 2-hydroxy-8-methylchromene-2-carboxylate isomerase activity Catalysis of the reaction: 2-hydroxy-8-methylchromene-2-carboxylate = 2-hydroxy-3-methylbenzalpyruvate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0782|EC:5.3.99.- molecular_function owl:Class GO:0047280 biolink:NamedThing nicotinamide phosphoribosyltransferase activity Catalysis of the reaction: diphosphate + nicotinamide mononucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + H(+) + nicotinamide. tmpzr1t_l9r_go_relaxed.owl NMN diphosphorylase activity|NMN pyrophosphorylase activity|nicotinamide mononucleotide pyrophosphorylase activity|nicotinamide mononucleotide synthetase activity|nicotinamide-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase activity|NMN synthetase activity Reactome:R-HSA-197250|EC:2.4.2.12|MetaCyc:2.4.2.12-RXN|RHEA:16149|KEGG_REACTION:R01271 molecular_function owl:Class GO:0070516 biolink:NamedThing CAK-ERCC2 complex A protein complex formed by the association of the cyclin-dependent protein kinase activating kinase (CAK) holoenzyme complex with ERCC2. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase activating kinase holoenzyme-ERCC2 complex cellular_component owl:Class GO:1900829 biolink:NamedThing D-tyrosine catabolic process The chemical reactions and pathways resulting in the breakdown of D-tyrosine. tmpzr1t_l9r_go_relaxed.owl D-tyrosine catabolism|D-tyrosine breakdown|D-tyrosine degradation se 2012-06-06T09:27:24Z biological_process owl:Class GO:0008984 biolink:NamedThing protein-glutamate methylesterase activity Catalysis of the reaction: protein L-glutamate O(5)-methyl ester + H2O = protein L-glutamate + methanol. tmpzr1t_l9r_go_relaxed.owl methyl-accepting chemotaxis protein methyl-esterase activity|chemotaxis-specific methylesterase activity|CheB methylesterase activity|protein-L-glutamate-O5-methyl-ester acylhydrolase activity|methylesterase CheB activity|protein-L-glutamate-5-O-methyl-ester acylhydrolase activity RHEA:23236|RESID:AA0072|MetaCyc:MCPMETEST-RXN|EC:3.1.1.61 molecular_function owl:Class GO:0052817 biolink:NamedThing very long chain acyl-CoA hydrolase activity Catalysis of the reaction: H2O + a very long chain acyl-CoA = a very long chain carboxylate + CoA. A very long chain has chain length greater than C18. tmpzr1t_l9r_go_relaxed.owl very long-chain acyl-thioester hydrolase activity|very long-chain hydrolase activity|very long-chain acyl coenzyme A hydrolase activity|very long-chain-acyl-CoA hydrolase activity ai 2011-10-27T12:18:28Z molecular_function owl:Class GO:0052816 biolink:NamedThing long-chain acyl-CoA hydrolase activity Catalysis of the reaction: H2O + a long-chain acyl-CoA = a long-chain carboxylate + CoA. A long chain is a chain of greater than 12 carbons in length. tmpzr1t_l9r_go_relaxed.owl long-chain hydrolase activity|long-chain acyl coenzyme A hydrolase activity|long-chain-acyl-CoA hydrolase activity|long-chain acyl-thioester hydrolase activity ai 2011-10-25T05:31:11Z molecular_function owl:Class GO:0038020 biolink:NamedThing insulin receptor recycling The process that results in the return of an insulin receptor to an active state at the plasma membrane. An active state is when the receptor is ready to receive an insulin signal. Internalized insulin receptors can be recycled to the plasma membrane or sorted to lysosomes for protein degradation. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-23T04:52:05Z biological_process owl:Class GO:0043034 biolink:NamedThing costamere Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Costamere cellular_component owl:Class GO:0018471 biolink:NamedThing 4-chlorobenzaldehyde oxidase activity Catalysis of the reaction: 4-chlorobenzaldehyde + 2 H2O = 4-chlorobenzoate + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0447|EC:1.14.13.- molecular_function owl:Class GO:0046193 biolink:NamedThing anaerobic phenol-containing compound catabolic process The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic phenol-containing compound breakdown|anaerobic phenol-containing compound catabolism|anaerobic phenol-containing compound degradation biological_process owl:Class GO:0016412 biolink:NamedThing serine O-acyltransferase activity Catalysis of the transfer of an acyl group to an oxygen atom on the serine molecule. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.30 molecular_function owl:Class GO:0006237 biolink:NamedThing deoxycytidine salvage Any process that generates deoxycytidine, 2-deoxyribosylcytosine, from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043695 biolink:NamedThing detection of pheromone The series of events in which a pheromone stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004496 biolink:NamedThing mevalonate kinase activity Catalysis of the reaction: (R)-mevalonate + ATP = (R)-5-phosphomevalonate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl MVA kinase activity|mevalonic kinase activity|mevalonic acid kinase activity|ATP:mevalonate 5-phosphotransferase activity|mevalonate phosphokinase activity|ATP:(R)-mevalonate 5-phosphotransferase activity|mevalonate 5-phosphotransferase activity|mevalonate kinase (phosphorylating) Reactome:R-HSA-191380|KEGG_REACTION:R02245|EC:2.7.1.36|MetaCyc:MEVALONATE-KINASE-RXN|RHEA:17065 molecular_function owl:Class GO:0006478 biolink:NamedThing peptidyl-tyrosine sulfation The sulfation of peptidyl-tyrosine residues to form peptidyl-O4'-sulfo-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl peptidyl-tyrosine sulphation RESID:AA0172 biological_process owl:Class GO:0046570 biolink:NamedThing methylthioribulose 1-phosphate dehydratase activity Catalysis of the reaction: S-methyl-5-thio-D-ribulose 1-phosphate = 5-(methylthio)-2,3-dioxopentyl phosphate + H(2)O. tmpzr1t_l9r_go_relaxed.owl S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase activity|1-PMT-ribulose dehydratase activity|methylthioribulose-1-phosphate dehydratase activity|S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase [5-(methylthio)-2,3-dioxopentyl-phosphate-forming]|5-methylthioribulose-1-phosphate 4-dehydratase activity|S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase[5-(methylthio)-2,3-dioxopentyl-phosphate-forming] RHEA:15549|EC:4.2.1.109|KEGG_REACTION:R07392|MetaCyc:R145-RXN|Reactome:R-HSA-1237140 GO:0043809 molecular_function owl:Class GO:0008821 biolink:NamedThing crossover junction endodeoxyribonuclease activity Catalysis of the endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction). tmpzr1t_l9r_go_relaxed.owl RusA holliday junction resolvase|Holliday junction nuclease activity|Holliday junction-cleaving endonuclease activity|Holliday junction endonuclease CCE1 activity|RusA endonuclease activity|endodeoxyribonuclease RUS activity|RusA Holliday junction resolvase activity|cruciform-cutting endonuclease activity|Holliday junction resolvase activity|Endo X3 activity|endo X3|resolving enzyme CCE1 activity|SpCCe1 holliday junction resolvase|endonuclease RuvC activity|Hje endonuclease activity|RuvC endonuclease activity|endonuclease X3 activity|endonuclease VII activity|crossover junction endoribonuclease activity|Holliday junction-resolving endoribonuclease activity|SpCCe1 Holliday junction resolvase activity MetaCyc:3.1.22.4-RXN|EC:3.1.22.4 GO:0008844 molecular_function owl:Class GO:0006901 biolink:NamedThing vesicle coating A protein coat is added to the vesicle to form the proper shape of the vesicle and to target the vesicle for transport to its destination. tmpzr1t_l9r_go_relaxed.owl vesicle coat assembly biological_process owl:Class GO:0099561 biolink:NamedThing synaptic membrane adhesion to extracellular matrix The binding of a synaptic membrane to the extracellular matrix via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990130 biolink:NamedThing GATOR1 complex A GTPase-activating protein (GAP) complex that regulates TORC1 signaling by interacting with the Rag GTPase. In human, the GATOR1 complex consists of DEPDC5, NPRL2, and NPRL3. In S. cerevisiae, this complex is referred to as SEACIT and contains the Iml1p, Npr2p, and Npr3p proteins. tmpzr1t_l9r_go_relaxed.owl IML1 complex|SEACIT complex https://github.com/geneontology/go-ontology/issues/21778 The Rag GTPase complex corresponds to Gtr1-Gtr2 GTPase complex ; GO:1990131. rb 2013-06-25T17:34:40Z cellular_component owl:Class GO:0061802 biolink:NamedThing anterior cell cortex The region that lies just beneath the plasma membrane in the part of a cell that is closest to the anterior as defined by the developing, or existing, anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl dph 2016-11-06T22:54:21Z cellular_component owl:Class GO:0004421 biolink:NamedThing hydroxymethylglutaryl-CoA synthase activity Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-3-methylglutaryl-coenzyme A synthase activity|beta-hydroxy-beta-methylglutaryl-CoA synthase activity|(s)-3-hydroxy-3-methylglutaryl-CoA acetoacetyl-CoA-lyase (CoA- acetylating) activity|acetoacetyl coenzyme A transacetase activity|3-hydroxy-3-methylglutaryl CoA synthetase activity|(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetyl-CoA-lyase (CoA-acetylating)|acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)|3-hydroxy-3-methylglutaryl-CoA synthase activity|3-hydroxy-3-methylglutaryl coenzyme A synthase activity|hydroxymethylglutaryl coenzyme A synthase activity|3-hydroxy-3-methylglutaryl coenzyme A synthetase activity|hydroxymethylglutaryl coenzyme alpha-condensing enzyme activity|hydroxymethylglutaryl coenzyme A-condensing enzyme|HMG-CoA synthase activity Reactome:R-HSA-191323|MetaCyc:HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN|Reactome:R-HSA-73918|RHEA:10188|EC:2.3.3.10|KEGG_REACTION:R01978 Note that this function was formerly EC:4.1.3.5. molecular_function owl:Class GO:1990092 biolink:NamedThing calcium-dependent self proteolysis The calcium-dependent hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds. tmpzr1t_l9r_go_relaxed.owl sl 2013-05-06T17:33:34Z biological_process owl:Class GO:0043803 biolink:NamedThing hydroxyneurosporene-O-methyltransferase activity Catalysis of the reaction: demethylspheroidene + S-adenosyl-L-methionine = H(+) + S-adenosyl-L-homocysteine + spheroidene. tmpzr1t_l9r_go_relaxed.owl 1-hydroxycarotenoid methylase|1-hydroxycarotenoid O-methylase|demethylspheroidene O-methyltransferase|1-HO-carotenoid methylase RHEA:30903|EC:2.1.1.210 molecular_function owl:Class GO:1900783 biolink:NamedThing fumiquinazoline F catabolic process The chemical reactions and pathways resulting in the breakdown of fumiquinazoline F. tmpzr1t_l9r_go_relaxed.owl fumiquinazoline F catabolism|fumiquinazoline F degradation|fumiquinazoline F breakdown di 2012-06-04T09:31:27Z biological_process owl:Class GO:0090633 biolink:NamedThing keto-deoxynonulosonic acid (KDN) cytidylyltransferase activity Catalysis of the reaction: CTP + KDN = diphosphate + CMP-KDN. tmpzr1t_l9r_go_relaxed.owl cytidine 5'-monophospho-2-Keto-3-deoxy-D-glycero-D-galacto-nononic acid synthetase activity|CMP-KDN synthetase activity tb 2015-03-19T15:05:54Z molecular_function owl:Class GO:0046911 biolink:NamedThing metal chelating activity The formation of bonds from two or more atoms within the same ligand to a metal atom in complexes in which the metal is part of a ring. tmpzr1t_l9r_go_relaxed.owl metal chelation|heavy metal chelation molecular_function owl:Class GO:0019509 biolink:NamedThing L-methionine salvage from methylthioadenosine The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. tmpzr1t_l9r_go_relaxed.owl methionine recycling|methionine salvage from methylthioadenosine|methionine regeneration|methionine salvage pathway MetaCyc:PWY-4361 biological_process owl:Class GO:0031083 biolink:NamedThing BLOC-1 complex A protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules. Many of the protein subunits are conserved between mouse and human; the mouse complex contains the Pallidin, Muted, Cappuccino, Dysbindin, Snapin, BLOS1, BLOS2, AND BLOS3 proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044541 biolink:NamedThing zymogen activation in other organism The chemical reactions and pathways performed by an organism resulting in the proteolytic processing of an inactive enzyme to an active form in another organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-22T11:39:41Z biological_process owl:Class GO:0000931 biolink:NamedThing gamma-tubulin large complex A complex of gamma tubulin and associated proteins thought to be formed by multimerization of gamma-tubulin small complexes. An example of this structure is found in Schizosaccharomyces pombe. tmpzr1t_l9r_go_relaxed.owl gamma-tubulin large complex, spindle pole body|gamma-tubulin large complex, mitotic spindle pole body|gamma-tubulin large complex, iMTOC|gamma-tubulin ring complex, centrosomal|gamma-tubulin large complex, interphase microtubule organizing center|gamma-tubulin ring complex|gamma-tubulin large complex, equatorial microtubule organizing center|gamma-tubulin large complex, equatorial microtubule organizing centre|gamma-tubulin large complex, interphase microtubule organizing centre|gamma-tubulin large complex, centrosomal|gamma-tubulin large complex, eMTOC https://github.com/geneontology/go-ontology/issues/20967 GO:0000924|GO:0055033|GO:0061494|GO:0000929|GO:0055032|GO:0000925|GO:0008274|GO:0000926|GO:0055031 cellular_component owl:Class GO:0071755 biolink:NamedThing IgM B cell receptor complex An IgM immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl membrane-bound IgM|surface IgM Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0042595 biolink:NamedThing behavioral response to starvation Any process that results in a change in the behavior of an organism as a result of deprivation of nourishment. tmpzr1t_l9r_go_relaxed.owl behavioural response to starvation biological_process owl:Class GO:0042464 biolink:NamedThing dosage compensation by hypoactivation of X chromosome Compensating for the two-fold variation in X:autosome chromosome ratios between sexes by an inactivation of a proportion of genes on both of the X chromosomes of the XX sex, leading to a decrease, of half, of the levels of gene expression from these chromosomes. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097665 biolink:NamedThing SCF-Mdm30 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Mdm30 in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:27:30Z cellular_component owl:Class GO:0033796 biolink:NamedThing sulfur reductase activity Catalysis of the reduction of elemental sulfur or polysulfide to hydrogen sulfide. tmpzr1t_l9r_go_relaxed.owl (donor):sulfur oxidoreductase activity|sulphur reductase activity EC:1.12.98.4|RHEA:35591|MetaCyc:RXN-8269|MetaCyc:1.97.1.3-RXN molecular_function owl:Class GO:0060463 biolink:NamedThing lung lobe morphogenesis The process in which the anatomical structures of a lung lobe are generated and organized. A lung lobe is a projection that extends from the lung. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044687 biolink:NamedThing geranylfarnesyl diphosphate synthase activity Catalysis of the reaction: geranylgeranyl diphosphate + isopentenyl diphosphate = (2E,6E,10E,14E)-geranylfarnesyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:25694|MetaCyc:RXN-8813|EC:2.5.1.81 jl 2012-08-15T14:20:25Z molecular_function owl:Class GO:0007074 biolink:NamedThing positive regulation of transcription involved in exit from mitosis, from RNA polymerase II promoter Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl activation of transcription on exit from mitosis, from Pol II promoter|activation of transcription on exit from mitosis, from RNA polymerase II promoter biological_process owl:Class GO:0002476 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class Ib The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0004592 biolink:NamedThing pantoate-beta-alanine ligase activity Catalysis of the reaction: ATP + (R)-pantoate + beta-alanine = AMP + diphosphate + (R)-pantothenate. tmpzr1t_l9r_go_relaxed.owl pantoate-activating enzyme activity|(R)-pantoate:beta-alanine ligase (AMP-forming)|D-pantoate:beta-alanine ligase (AMP-forming)|pantoic-activating enzyme activity|pantothenate synthetase activity MetaCyc:PANTOATE-BETA-ALANINE-LIG-RXN|RHEA:10912|EC:6.3.2.1 molecular_function owl:Class GO:0047616 biolink:NamedThing acyl-CoA dehydrogenase (NADP+) activity Catalysis of the reaction: acyl-CoA + NADP+ = 2,3-dehydroacyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl crotonyl coenzyme A reductase activity|enoyl coenzyme A reductase activity|dehydrogenase, acyl coenzyme A (nicotinamide adenine dinucleotide phosphate)|2-enoyl-CoA reductase activity|acyl-CoA:NADP+ 2-oxidoreductase activity EC:1.3.1.8|RHEA:22460|MetaCyc:ACYL-COA-DEHYDROGENASE-NADP+-RXN molecular_function owl:Class GO:0047908 biolink:NamedThing fusarinine-C ornithinesterase activity Catalysis of the reaction: N5-acyl-L-ornithine ester + H2O = N5-acyl-L-ornithine + an alcohol. tmpzr1t_l9r_go_relaxed.owl ornithine esterase activity|5-N-acyl-L-ornithine-ester hydrolase activity|N5-acyl-L-ornithine-ester hydrolase activity EC:3.1.1.48|MetaCyc:FUSARININE-C-ORNITHINESTERASE-RXN|RHEA:20165 molecular_function owl:Class GO:0052627 biolink:NamedThing vanillate amino acid synthetase activity Catalysis of the reaction: vanillate + ATP + amino acid = vanillate amino acid conjugate + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070738 biolink:NamedThing tubulin-glycine ligase activity Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target tubulin molecule; acts on alpha or beta tubulin. tmpzr1t_l9r_go_relaxed.owl tubulin glycylase activity mah 2009-06-19T02:02:01Z molecular_function owl:Class GO:0045771 biolink:NamedThing negative regulation of autophagosome size Any process that reduces autophagosome size. tmpzr1t_l9r_go_relaxed.owl negative regulation of autophagic vacuole size|inhibition of autophagic vacuole size|down-regulation of autophagic vacuole size|downregulation of autophagic vacuole size|down regulation of autophagic vacuole size biological_process owl:Class GO:0019410 biolink:NamedThing aerobic respiration, using carbon monoxide as electron donor The metabolic process in which carbon monoxide (CO) is oxidized to carbon dioxide (CO2) to generate energy. Conservation of energy in this process likely uses sodium ion gradients for ATP synthesis and is coupled to quantitative sulfide methylation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099018 biolink:NamedThing restriction-modification system evasion by virus Any process, either active or passive, by which a virus evades the DNA restriction modification system of its host. Some viruses encode their own methyltransferase in order to protect their genome from host restriction enzymes. Others directly inhibit restruction enzymes while some use unusual bases in their genome to avoid restriction. tmpzr1t_l9r_go_relaxed.owl VZ:3966 biological_process owl:Class GO:0034995 biolink:NamedThing SC5b-7 complex A protein complex that consist of complement components C5b6 and C7 stably inserted in a cell membrane. Formation of the SC5b-7 complex is the first phase of membrane attack complex assembly. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102452 biolink:NamedThing bisdemethoxycurcumin synthase activity Catalysis of the reaction: 2 4-coumaryl-CoA + malonyl-CoA + H2O + H+ <=> 3 coenzyme A + bisdemethoxycurcumin + 2 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13958|RHEA:34803|EC:2.3.1.211 molecular_function owl:Class GO:0140701 biolink:NamedThing 3',3'-cyclic GMP-AMP synthase activity Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic G-P(3'-5')A-P(3'-5') (cyclic 3',3' GAMP). tmpzr1t_l9r_go_relaxed.owl 3',3'-cyclic GAMP synthase activity|3',3' cyclic-GMP-AMP synthase activity|3',3' cyclic-GAMP synthase activity https://github.com/geneontology/go-ontology/issues/21980 RHEA:35647 pg 2021-08-27T05:13:09Z molecular_function owl:Class GO:0047806 biolink:NamedThing cytochrome-c3 hydrogenase activity Catalysis of the reaction: 2 H2 + ferricytochrome c3 = 4 H+ + ferrocytochrome c3. tmpzr1t_l9r_go_relaxed.owl hydrogen:ferricytochrome-c3 oxidoreductase activity|cytochrome c3 reductase activity|H2:ferricytochrome c3 oxidoreductase activity|H(2):ferricytochrome c3 oxidoreductase activity|cytochrome hydrogenase activity MetaCyc:CYTOCHROME-C3-HYDROGENASE-RXN|EC:1.12.2.1|UM-BBD_enzymeID:e0481|RHEA:20625 molecular_function owl:Class GO:0043483 biolink:NamedThing anthocyanin biosynthetic process involved in anthocyanin accumulation in response to UV light The chemical reactions and pathways resulting in the formation of the pigment anthocyanin, contributing to anthocyanin accumulation in a tissue in response to a UV light stimulus. tmpzr1t_l9r_go_relaxed.owl anthocyanin biosynthetic process during anthocyanin accumulation in tissues in response to UV light stimulus|anthocyanin biosynthesis during anthocyanin accumulation in tissues in response to UV light stimulus|anthocyanin biosynthetic process during anthocyanin accumulation in response to UV light biological_process owl:Class GO:0004380 biolink:NamedThing glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-N-acetyl-alpha-D-galactosaminyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose. tmpzr1t_l9r_go_relaxed.owl A transferase activity|blood-group substance alpha-acetyltransferase activity|UDP-N-acetyl-D-galactosamine:glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose 3-N-acetyl-D-galactosaminyltransferase activity|fucosylglycoprotein alpha-N-acetylgalactosaminyltransferase activity|histo-blood group A acetylgalactosaminyltransferase activity|blood-group substance A-dependent acetylgalactosaminyltransferase activity|UDP-GalNAc:Fucalpha1->2Galalpha1->3-N-acetylgalactosaminyltransferase activity|fucosylgalactose acetylgalactosaminyltransferase activity|fucosylgalactose alpha-N-acetylgalactosaminyltransferase activity|histo-blood group A glycosyltransferase (Fucalpha1->2Galalpha1->3-N-acetylgalactosaminyltransferase)|A-transferase activity|histo-blood group A transferase activity|alpha-3-N-acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:alpha-L-fucosyl-1,2-D-galactose 3-N-acetyl-D-galactosaminyltransferase activity RHEA:19021|Reactome:R-HSA-9034042|EC:2.4.1.40|MetaCyc:2.4.1.40-RXN|Reactome:R-HSA-9033959 molecular_function owl:Class GO:0034947 biolink:NamedThing terephthalate decarboxylase activity Catalysis of the reaction: terephthalate + H2O = benzoate + HCO3-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0321 molecular_function owl:Class GO:0007375 biolink:NamedThing anterior midgut invagination Internalization of the anterior midgut into the interior of the embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004077 biolink:NamedThing biotin-[acetyl-CoA-carboxylase] ligase activity Catalysis of the reaction: ATP + biotin + apo-(acetyl-CoA:carbon-dioxide ligase (ADP forming)) = AMP + diphosphate + (acetyl-CoA:carbon-dioxide ligase (ADP forming)). tmpzr1t_l9r_go_relaxed.owl HCS|biotin-acetyl-CoA-carboxylase ligase activity|acetyl CoA holocarboxylase synthetase activity|acetyl coenzyme A holocarboxylase synthetase activity|biotin holoenzyme synthetase activity|biotin:apo-acetyl-CoA:carbon-dioxide ligase (ADP-forming) ligase (AMP-forming)|biotin-acetyl coenzyme A carboxylase synthetase activity|biotin--protein ligase activity|biotin:apocarboxylase ligase activity|biotin--[acetyl-CoA carboxylase] synthetase activity|acetyl-CoA carboxylase biotin holoenzyme synthetase activity|biotin-acetyl-CoA carboxylase synthetase MetaCyc:BIOTINLIG-RXN|RHEA:11756|EC:6.3.4.15 molecular_function owl:Class GO:0071053 biolink:NamedThing alpha9-beta1 integrin-ADAM2 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM2. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-ADAM2 complex mah 2009-11-03T03:58:22Z cellular_component owl:Class GO:1902768 biolink:NamedThing isoprenoid biosynthetic process via 1-deoxy-D-xylulose 5-phosphate The chemical reactions and pathways resulting in the formation of isoprenoid via 1-deoxy-D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl isoprenoid synthesis via 1-deoxy-D-xylulose 5-phosphate|isoprenoid biosynthesis via 1-deoxy-D-xylulose 5-phosphate|isoprenoid anabolism via 1-deoxy-D-xylulose 5-phosphate|isoprenoid formation via 1-deoxy-D-xylulose 5-phosphate tt 2014-03-11T00:09:55Z biological_process owl:Class GO:0008510 biolink:NamedThing sodium:bicarbonate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + HCO3-(out) = Na+(in) + HCO3-(in). tmpzr1t_l9r_go_relaxed.owl sodium/bicarbonate cotransporter activity|sodium:bicarbonate cotransporter activity Reactome:R-HSA-425483|Reactome:R-HSA-5656219|Reactome:R-HSA-8878664 molecular_function owl:Class GO:0051500 biolink:NamedThing D-tyrosyl-tRNA(Tyr) deacylase activity Catalysis of the reaction: D-tyrosyl-tRNA(Tyr) = D-tyrosine + tRNA(Tyr). Hydrolysis of the removal of D-tyrosine from tyrosine residues in charged tRNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061582 biolink:NamedThing intestinal epithelial cell migration The orderly movement of an intestinal epithelial cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl dph 2013-12-23T07:30:55Z biological_process owl:Class GO:0060447 biolink:NamedThing bud outgrowth involved in lung branching The process in which a region of the lung epithelium initiates an outgrowth. tmpzr1t_l9r_go_relaxed.owl bud formation involved in lung branching biological_process owl:Class GO:0008459 biolink:NamedThing chondroitin 6-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:chondroitin 6'-sulfotransferase activity|terminal 6-sulfotransferase activity|chondroitin 6-sulphotransferase activity|3'-phosphoadenosine 5'-phosphosulfate (PAPS):chondroitin sulfate sulfotransferase activity|chondroitin 6-O-sulfotransferase activity MetaCyc:CHONDROITIN-6-SULFOTRANSFERASE-RXN|EC:2.8.2.17|Reactome:R-HSA-3595175|Reactome:R-HSA-2018682|RHEA:11108 molecular_function owl:Class GO:0034245 biolink:NamedThing mitochondrial DNA-directed RNA polymerase complex A DNA-directed RNA polymerase complex located in the mitochondrion. Mitochondrial RNA polymerase is composed of two subunits, a catalytic core, which resembles the enzymes from bacteriophage T7 and T3, and a specificity factor required for promoter recognition, which is similar to members of the eubacterial sigma factor family. In S. cerevisiae, these are encoded by the nuclear genes RPO41 and MTF1 and the specificity factor, required for promoter recognition and initiation, is not present in the elongating form. tmpzr1t_l9r_go_relaxed.owl mitochondrial RNA polymerase complex|mitochondrial RNA polymerase holoenzyme complex cellular_component owl:Class GO:2000701 biolink:NamedThing glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation The series of molecular signals generated as a consequence of a glial cell-derived neurotrophic factor receptor binding to one of its physiological ligands that contributes to the formation of the ureteric bud from the Wolffian duct. tmpzr1t_l9r_go_relaxed.owl GDNF receptor signaling pathway of ureteric bud formation|glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation|glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation|glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation yaf 2011-05-25T09:34:07Z biological_process owl:Class GO:0120318 biolink:NamedThing olfactory sociosexual communication The use of external chemical cues called pheromones to send social and sexual information between members of the same species, leading to specific behavioral responses. Pheromones may be detected by two olfactory sensory circuits, the main olfactory pathway and the vomeronasal system. tmpzr1t_l9r_go_relaxed.owl Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior. krc 2021-05-21T19:35:58Z biological_process owl:Class GO:0043850 biolink:NamedThing RecFOR complex A heterotrimeric complex composed of the subunits RecF, RecO and RecR. Mediates the loading of RecA protein specifically onto SSB-coated gapped DNA during DNA repair. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046383 biolink:NamedThing dTDP-rhamnose metabolic process The chemical reactions and pathways involving dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate. tmpzr1t_l9r_go_relaxed.owl dTDP-rhamnose metabolism biological_process owl:Class GO:0006705 biolink:NamedThing mineralocorticoid biosynthetic process The chemical reactions and pathways resulting in the formation of mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. tmpzr1t_l9r_go_relaxed.owl mineralocorticoid formation|mineralocorticoid synthesis|mineralocorticoid biosynthesis|mineralocorticoid anabolism biological_process owl:Class GO:0047928 biolink:NamedThing gibberellin beta-D-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + gibberellin = UDP + gibberellin 2-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl gibberellin b-glucosyltransferase activity|uridine diphosphoglucose-gibberellate 7-glucosyltransferase activity|UDP-glucose:gibberellin 2-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-gibberellate 3-O-glucosyltransferase activity|UDPglucose:gibberellin 2-O-beta-D-glucosyltransferase activity RHEA:20025|MetaCyc:GIBBERELLIN-BETA-GLUCOSYLTRANSFERASE-RXN|EC:2.4.1.176 molecular_function owl:Class GO:0102716 biolink:NamedThing gibberellin A28,oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A28 + 2-oxoglutarate + O2 <=> (2betaOH)-gibberellin28 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6547 molecular_function owl:Class GO:0018256 biolink:NamedThing protein formylation The addition of a formyl group to a protein amino acid. tmpzr1t_l9r_go_relaxed.owl protein amino acid formylation biological_process owl:Class GO:1902971 biolink:NamedThing mitotic DNA replication DNA duplex unwinding Any DNA duplex unwinding involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA duplex unwinding involved in mitotic DNA replication|DNA duplex unwinding involved in mitotic cell cycle DNA replication jl 2014-05-06T15:20:47Z biological_process owl:Class GO:0008697 biolink:NamedThing 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity Catalysis of the reaction: 5-dehydro-4-deoxy-D-glucuronate = 3-deoxy-D-glycero-2,5-hexodiulosonate. tmpzr1t_l9r_go_relaxed.owl 4-deoxy-L-threo-5-hexosulose-uronate aldose-ketose-isomerase activity|4-deoxy-L-threo-5-hexulose uronate isomerase activity|5-keto-4-deoxyuronate isomerase activity EC:5.3.1.17|KEGG_REACTION:R04383|RHEA:23896|MetaCyc:5.3.1.17-RXN molecular_function owl:Class GO:0072557 biolink:NamedThing IPAF inflammasome complex An inflammasome complex that consists of three components, IPAF, NAIP and caspase-1, and includes among its functions the sensing of flagellin derived from Legionella pneumophila, Salmonella typhimurium, Pseudomonas aeruginosa and Shigella flexneri. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-27T12:01:44Z cellular_component owl:Class GO:0038062 biolink:NamedThing protein tyrosine kinase collagen receptor activity Combining with collagen and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl collagen RTK activity|discoidin domain receptor bf 2012-01-18T01:38:40Z molecular_function owl:Class GO:0008404 biolink:NamedThing arachidonic acid 14,15-epoxygenase activity Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-14,15-epoxyeicosatrienoic acid. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 CYP2C39|cytochrome P450 CYP2C29 RHEA:51472 molecular_function owl:Class GO:0072169 biolink:NamedThing specification of posterior mesonephric tubule identity The process in which the tubules of the posterior mesonephros acquire their identity. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:54:06Z biological_process owl:Class GO:0004816 biolink:NamedThing asparagine-tRNA ligase activity Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl L-asparagine:tRNAAsn ligase (AMP-forming)|asparaginyl transfer RNA synthetase activity|asparaginyl-tRNA synthetase activity|asparaginyl-transfer ribonucleate synthetase activity|asparagyl-transfer RNA synthetase activity|asparagine translase activity|asparaginyl transfer ribonucleic acid synthetase activity Reactome:R-HSA-379996|RHEA:11180|MetaCyc:ASPARAGINE--TRNA-LIGASE-RXN|Reactome:R-HSA-380227|KEGG_REACTION:R03648|EC:6.1.1.22 molecular_function owl:Class GO:0034328 biolink:NamedThing decanoyltransferase activity Catalysis of the transfer of a decanoyl (CH3-[CH2]8-CO-) group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0103037 biolink:NamedThing L-glyceraldehyde 3-phosphate reductase activity Catalysis of the reaction: sn-glycerol 3-phosphate + NADP = H+ + L-glyceraldehyde 3-phosphate + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5410 molecular_function owl:Class GO:0031044 biolink:NamedThing O-glycan processing, core 8 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 8 O-glycan structure, Gal-alpha-(1->3)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070310 biolink:NamedThing ATR-ATRIP complex A protein complex that contains the protein kinase ATR and ATR-interacting protein (ATRIP) and binds single-stranded DNA; ssDNA binding affinity is increased in the presence of replication protein A. tmpzr1t_l9r_go_relaxed.owl Mec1-Lcd1 complex|Rad3-Rad26 complex cellular_component owl:Class GO:0050014 biolink:NamedThing ketotetrose-phosphate aldolase activity Catalysis of the reaction: L-erythrulose 1-phosphate = formaldehyde + glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl erythrulose-1-phosphate formaldehyde-lyase (glycerone-phosphate-forming)|erythrose-1-phosphate synthase activity|erythrulose-1-phosphate formaldehyde-lyase activity|erythrulose-1-phosphate synthetase activity|phosphoketotetrose aldolase activity RHEA:20932|MetaCyc:KETOTETROSE-PHOSPHATE-ALDOLASE-RXN|EC:4.1.2.2|KEGG_REACTION:R01014 molecular_function owl:Class GO:0032051 biolink:NamedThing clathrin light chain binding Binding to a clathrin light chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102777 biolink:NamedThing caffeoyl-CoA:pelargonidin-3,5-diglucoside 5-O-glucoside-6-O-hydroxycinnamoyltransferase activity Catalysis of the reaction: anthocyanidin 3,5-di-O-beta-D-glucoside + caffeoyl-CoA <=> pelargonidin-3,5-diglucoside-5-O-caffeoylglucoside + coenzyme A(4-). tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.153|MetaCyc:RXN-7842 molecular_function owl:Class GO:1903577 biolink:NamedThing cellular response to L-arginine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-arginine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-10-29T22:18:54Z biological_process owl:Class GO:0047852 biolink:NamedThing diferric-transferrin reductase activity Catalysis of the reaction: transferrin[Fe2+]2 + NAD+ = transferrin[Fe3+]2 + NADH. tmpzr1t_l9r_go_relaxed.owl transferrin reductase activity|diferric transferrin reductase activity|NADH diferric transferrin reductase activity|transferrin[Fe(II)]2:NAD+ oxidoreductase activity RHEA:13841|MetaCyc:DIFFERIC-TRANSFERRIN-REDUCTASE-RXN|EC:1.16.1.2 molecular_function owl:Class GO:0140423 biolink:NamedThing effector-mediated suppression of host pattern-triggered immunity signaling A process mediated by a molecule secreted by a symbiont that results in the suppression of a pattern-triggered immunity PTI signaling pathway. PTI signaling pathways are found in plants. tmpzr1t_l9r_go_relaxed.owl effector-mediated suppression of pattern-triggered immunity signaling|effector-mediated suppression of host PRR signalling|effector-mediated suppression of host PRR signaling|effector-mediated suppression of host pattern recognition receptor signaling|effector-mediated suppression of PTI signalling https://github.com/geneontology/go-ontology/issues/18683 pg 2020-02-03T09:50:33Z biological_process owl:Class GO:0052914 biolink:NamedThing 16S rRNA (guanine(1207)-N(2))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(1207) in 16S rRNA = N(2)-methylguanosine(1207) in 16S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl M(2)G1207 methyltransferase activity EC:2.1.1.172|KEGG_REACTION:R07234|RHEA:42736|MetaCyc:RXN-11576 molecular_function owl:Class GO:0102349 biolink:NamedThing trans-lignocero-2-enoyl-CoA reductase activity Catalysis of the reaction: tetracosanoyl-CoA + NADP <=> trans-2-tetracosenoyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13308 molecular_function owl:Class GO:0015382 biolink:NamedThing sodium:sulfate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + Na+(out) = sulfate(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium:sulfate cotransporter activity|sodium:sulphate symporter activity Reactome:R-HSA-433114|Reactome:R-HSA-433099 molecular_function owl:Class GO:0048555 biolink:NamedThing generative cell nucleus The nucleus of the generative cell, a cell contained within the pollen grain that will divide to produce two haploid sperm cells. tmpzr1t_l9r_go_relaxed.owl sperm cell nucleus|male germ cell nucleus cellular_component owl:Class GO:0102985 biolink:NamedThing delta12-fatty-acid desaturase activity Catalysis of the reaction: oleoyl-CoA + O2 + a reduced electron acceptor <=> linoleoyl-CoA + 2 H2O + an oxidized electron acceptor. This microsomal enzyme introduces a cis double bond at position 12 of fatty-acyl-CoAs that contain a cis double bond at position 9. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9601|EC:1.14.19.6|RHEA:25856 molecular_function owl:Class GO:1904350 biolink:NamedThing regulation of protein catabolic process in the vacuole Any process that modulates the frequency, rate or extent of protein catabolic process in the vacuole. tmpzr1t_l9r_go_relaxed.owl regulation of vacuolar protein degradation|regulation of vacuolar protein catabolism|regulation of vacuolar protein breakdown|regulation of vacuolar protein catabolic process rl 2015-06-12T09:10:36Z biological_process owl:Class GO:0047048 biolink:NamedThing 3-hydroxybenzyl-alcohol dehydrogenase activity Catalysis of the reaction: 3-hydroxybenzyl alcohol + NADP(+) = 3-hydroxybenzaldehyde + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-hydroxybenzyl-alcohol:NADP+ oxidoreductase activity|m-hydroxybenzyl alcohol (NADP) dehydrogenase activity|m-hydroxybenzylalcohol dehydrogenase activity|m-hydroxybenzyl alcohol dehydrogenase activity KEGG_REACTION:R04136|MetaCyc:1.1.1.97-RXN|EC:1.1.1.97|RHEA:22340 molecular_function owl:Class GO:0060279 biolink:NamedThing positive regulation of ovulation Any process that activates or increases the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043754 biolink:NamedThing dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine. tmpzr1t_l9r_go_relaxed.owl dihydrolipoyl transacylase activity|enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA S-(2-methylpropanoyl)transferase activity|2-methylpropanoyl-CoA:enzyme-N6-(dihydrolipoyl)lysine:S-(2-methylpropanoyl)transferase activity|2-methylpropanoyl-CoA:enzyme-6-N-(dihydrolipoyl)lysine:S-(2-methylpropanoyl)transferase activity MetaCyc:2.3.1.168-RXN|RHEA:18865|EC:2.3.1.168 molecular_function owl:Class GO:0106271 biolink:NamedThing D-arabinose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH. tmpzr1t_l9r_go_relaxed.owl RHEA:21892|EC:1.1.1.117 hjd 2020-06-23T18:47:25Z molecular_function owl:Class GO:1901062 biolink:NamedThing guaiacyl lignin catabolic process The chemical reactions and pathways resulting in the breakdown of guaiacyl lignin. tmpzr1t_l9r_go_relaxed.owl G-lignin catabolic process|guaiacyl lignin degradation|guaiacyl lignin catabolism|guaiacyl lignin breakdown tt 2012-06-29T02:47:03Z biological_process owl:Class GO:0003234 biolink:NamedThing bulbus arteriosus formation The developmental process pertaining to the initial formation of the bulbus arteriosus from unspecified parts. The bulbus arteriosus is an elastic chamber of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T11:10:02Z biological_process owl:Class GO:0047857 biolink:NamedThing dihydrouracil oxidase activity Catalysis of the reaction: 5,6-dihydrouracil + O(2) = H(2)O(2) + uracil. tmpzr1t_l9r_go_relaxed.owl 5,6-dihydrouracil:oxygen oxidoreductase activity EC:1.3.3.7|MetaCyc:DIHYDROURACIL-OXIDASE-RXN|KEGG_REACTION:R00975|RHEA:12384 molecular_function owl:Class GO:0140251 biolink:NamedThing regulation protein catabolic process at presynapse Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein at the presynapse. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/synapse/issues/204 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-15T10:35:39Z biological_process owl:Class GO:0031859 biolink:NamedThing platelet activating factor receptor binding Binding to a platelet activating factor receptor. tmpzr1t_l9r_go_relaxed.owl platelet activating factor receptor ligand molecular_function owl:Class GO:0098006 biolink:NamedThing viral DNA genome packaging, headful The encapsulation of the viral genome within the capsid where DNA is packaged into the capsid until the capsid is full. tmpzr1t_l9r_go_relaxed.owl phage headful packaging Generalized transducing phages usually use this mode of DNA packaging. bm 2012-07-18T16:15:09Z biological_process owl:Class GO:0070620 biolink:NamedThing EGFR-Grb2-Sos complex A protein complex that contains the epidermal growth factor receptor (EGFR), Grb2 and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway. tmpzr1t_l9r_go_relaxed.owl Egfr-Grb2-mSos1 complex, EGF stimulated mah 2009-04-29T04:36:30Z cellular_component owl:Class GO:0003119 biolink:NamedThing regulation of vasoconstriction by neuronal epinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of epinephrine released by nerve endings. tmpzr1t_l9r_go_relaxed.owl regulation of vasoconstriction by neuronal adrenaline biological_process owl:Class GO:0003115 biolink:NamedThing regulation of vasoconstriction by epinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of secretion of epinephrine into the bloodstream or released by nerve endings. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006735 biolink:NamedThing NADH regeneration A metabolic process that generates a pool of NADH by the reduction of NAD+. tmpzr1t_l9r_go_relaxed.owl reduced NAD regeneration|NAD (reduced) regeneration|reduced nicotinamide adenine dinucleotide regeneration biological_process owl:Class GO:0047357 biolink:NamedThing UDP-galactose-UDP-N-acetylglucosamine galactose phosphotransferase activity Catalysis of the reaction: UDP-N-acetyl-alpha-D-glucosamine + UDP-D-galactose = H(+) + UDP-N-acetyl-6-(D-galactose-1-phospho)-D-glucosamine + UMP. tmpzr1t_l9r_go_relaxed.owl UDPgalactose-UDP-N-acetylglucosamine galactose phosphotransferase activity|UDP-galactose:UDP-N-acetyl-D-glucosamine galactose phosphotransferase activity|galactose-1-phosphotransferase activity|galactosyl phosphotransferase activity|uridine diphosphogalactose-uridine diphosphoacetylglucosamine galactose-1-phosphotransferase activity|UDPgalactose:UDP-N-acetyl-D-glucosamine galactose phosphotransferase activity KEGG_REACTION:R00504|RHEA:22440|MetaCyc:2.7.8.18-RXN|EC:2.7.8.18 molecular_function owl:Class GO:0080069 biolink:NamedThing 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 7-methylthioheptyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 7-methylthioheptyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4332 dhl 2009-04-13T04:07:32Z molecular_function owl:Class GO:0031755 biolink:NamedThing Edg-2 lysophosphatidic acid receptor binding Binding to an Edg-2 lysophosphatidic acid receptor. tmpzr1t_l9r_go_relaxed.owl LPA1 receptor binding|Edg-2 lysophosphatidic acid receptor ligand molecular_function owl:Class GO:0098990 biolink:NamedThing AMPA selective glutamate receptor signaling pathway A series of molecular signals initiated by glutamate binding to an AMPA-selective glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035199 biolink:NamedThing salt aversion The specific avoidance actions or reactions of an organism in response to the perception of salt. tmpzr1t_l9r_go_relaxed.owl behavioral response to salt biological_process owl:Class GO:0005091 biolink:NamedThing guanyl-nucleotide exchange factor adaptor activity The binding activity of a molecule that brings together a guanyl-nucleotide exchange factor and one or more other proteins, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043841 biolink:NamedThing (S)-lactate 2-kinase activity Catalysis of the reaction: (S)-lactate + GTP = 2-phospho-(S)-lactate + GDP. tmpzr1t_l9r_go_relaxed.owl lactate 2-kinase activity MetaCyc:RXN-8076 molecular_function owl:Class GO:0043888 biolink:NamedThing (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase activity Catalysis of the transfer of a geranylgeranyl group from geranylgeranyl diphosphate to (S)-3-O-geranylgeranylglyceryl phosphate to form (S)-2,3-di-O-geranylgeranylglyceryl phosphate. tmpzr1t_l9r_go_relaxed.owl DGGGP synthase activity|DGGGPS|2,3-dGGGPS|UbiA EC:2.5.1.- This function is involved in archaeal lipid synthesis. molecular_function owl:Class GO:0031476 biolink:NamedThing myosin VI complex A myosin complex containing one or more class VI myosin heavy chains and associated light chains. Myosin VI has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain; a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034676 biolink:NamedThing integrin alpha6-beta4 complex An integrin complex that comprises one alpha6 subunit and one beta4 subunit. tmpzr1t_l9r_go_relaxed.owl alpha6-beta4 integrin complex|ITGA6-ITGB4 complex cellular_component owl:Class GO:0034210 biolink:NamedThing sterol deacetylation The removal of an acetyl group from a sterol molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034208 biolink:NamedThing steroid deacetylation The removal of an acetyl group from a steroid molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035862 biolink:NamedThing dITP metabolic process The chemical reactions and pathways involving dITP (deoxyinosine triphosphate (2'-deoxyinosine 5'-triphosphate). dITP is a deoxyinosine phosphate compound having a triphosphate group at the 5'-position. tmpzr1t_l9r_go_relaxed.owl 2'-Deoxyinosine-5'-triphosphate metabolic process|dITP metabolism|2'-Deoxyinosine 5'-triphosphate metabolic process|deoxyinosine 5'-triphosphate metabolic process|deoxyinosine triphosphate (2'-deoxyinosine 5'-triphosphate) metabolic process bf 2011-05-25T02:52:58Z biological_process owl:Class GO:0085030 biolink:NamedThing symbiotic process benefiting host A process carried out by symbiont gene products that enables a symbiotic interaction with a host organism, that is beneficial to the host organism. tmpzr1t_l9r_go_relaxed.owl mutualism jl 2010-07-27T01:25:21Z biological_process owl:Class GO:0009340 biolink:NamedThing DNA topoisomerase IV complex A heterodimeric enzyme, which in most bacterial species is composed of two subunits, ParC and ParE. Functions in chromosome segregation and can relax supercoiled DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000269 biolink:NamedThing toxin export channel activity Enables the energy independent passage of toxins, sized less than 1000 Da, across a membrane towards the outside of the cell. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0021752 biolink:NamedThing inferior salivary nucleus development The process whose specific outcome is the progression of the inferior salivary nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903982 biolink:NamedThing negative regulation of microvillus length A process that decreases the length of a microvillus. tmpzr1t_l9r_go_relaxed.owl down-regulation of regulation of microvillus length|downregulation of regulation of microvillus length|down regulation of regulation of microvillus length|inhibition of regulation of microvillus length als 2015-03-03T13:23:52Z biological_process owl:Class GO:0034066 biolink:NamedThing Ric1-Rgp1 guanyl-nucleotide exchange factor complex A protein complex that acts as a nucleotide exchange factor for the GTPase Ypt6p, and is required for fusion of endosome-derived vesicles with the Golgi. tmpzr1t_l9r_go_relaxed.owl Ric1p-Rgp1p complex cellular_component owl:Class GO:0070840 biolink:NamedThing dynein complex binding Binding to a dynein complex, a protein complex that contains two or three dynein heavy chains and several light chains, and has microtubule motor activity. tmpzr1t_l9r_go_relaxed.owl dynein binding mah 2009-07-31T01:22:47Z GO:0045502 molecular_function owl:Class GO:0052927 biolink:NamedThing CTP:tRNA cytidylyltransferase activity Catalysis of the reaction: a tRNA precursor + CTP = a tRNA with a 3' cytidine end + diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:2.7.7.72|KEGG_REACTION:R09383 molecular_function owl:Class GO:0008352 biolink:NamedThing katanin complex A complex possessing an activity that couples ATP hydrolysis to the severing of microtubules; usually a heterodimer comprising a catalytic subunit (often 60kDa) and a regulatory subunit (often 80 kDa). tmpzr1t_l9r_go_relaxed.owl Consider also annotating to the molecular function term 'microtubule-severing ATPase activity ; GO:0008568'. cellular_component owl:Class GO:0034832 biolink:NamedThing geranial dehydrogenase activity Catalysis of the reaction: geranial + NAD+ + OH- = geranylate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1164 molecular_function owl:Class GO:0102821 biolink:NamedThing bixin methyltransferase activity Catalysis of the reaction: bixin + S-adenosyl-L-methionine <=> bixin dimethyl ester + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8239 molecular_function owl:Class GO:0005056 biolink:NamedThing tiggrin receptor activity Combining with the extracellular matrix ligand tiggrin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0048032 biolink:NamedThing galacturonate binding Binding to a galacturonate. Galacturonate is the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. tmpzr1t_l9r_go_relaxed.owl galacturonic acid binding molecular_function owl:Class GO:0005827 biolink:NamedThing polar microtubule Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart. tmpzr1t_l9r_go_relaxed.owl pole-to-pole microtubule cellular_component owl:Class GO:0008440 biolink:NamedThing inositol-1,4,5-trisphosphate 3-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,4,5-trisphosphate + ATP = 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl IP3 3-kinase activity|1D-myo-inositol-trisphosphate 3-kinase activity|inositol trisphosphate 3-kinase activity|ATP:1D-myo-inositol-1,4,5-trisphosphate 3-phosphotransferase activity|Ins(1,4,5)P3 3-kinase activity|inositol-trisphosphate 3-kinase activity|IP3K activity|ins(1,4,5)P(3) 3-kinase activity Reactome:R-HSA-1855153|RHEA:11020|MetaCyc:2.7.1.127-RXN|Reactome:R-HSA-1855233|KEGG_REACTION:R03433|EC:2.7.1.127 molecular_function owl:Class GO:0047983 biolink:NamedThing homoglutathione synthase activity Catalysis of the reaction: beta-alanine + L-gamma-glutamyl-L-cysteine + ATP = gamma-L-glutamyl-L-cysteinyl-beta-alanine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl homoglutathione synthetase activity|beta-alanine specific hGSH synthetase activity|gamma-L-glutamyl-L-cysteine:beta-alanine ligase (ADP-forming) MetaCyc:HOMOGLUTATHIONE-SYNTHASE-RXN|RHEA:17993|KEGG_REACTION:R02741|EC:6.3.2.23 molecular_function owl:Class GO:1990439 biolink:NamedThing MAP kinase serine/threonine phosphatase activity Catalysis of the reaction: MAP kinase threonine phosphate + H2O = MAP kinase threonine + phosphate and MAP kinase serine phosphate + H2O = MAP kinase serine + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2014-07-31T12:21:04Z molecular_function owl:Class GO:1903824 biolink:NamedThing negative regulation of telomere single strand break repair Any process that stops, prevents or reduces the frequency, rate or extent of telomere single strand break repair. tmpzr1t_l9r_go_relaxed.owl down regulation of telomere single-strand break repair|downregulation of telomere SSBR|inhibition of telomere single strand break repair|inhibition of single strand break repair in telomere|down-regulation of single strand break repair in telomere|downregulation of telomeric single strand break repair|down-regulation of telomeric single strand break repair|inhibition of telomere single-strand break repair|inhibition of telomere SSBR|down regulation of telomere SSBR|inhibition of telomeric single strand break repair|downregulation of single strand break repair in telomere|negative regulation of telomere single-strand break repair|negative regulation of telomeric single strand break repair|downregulation of telomere single-strand break repair|down-regulation of telomere single strand break repair|down regulation of telomere single strand break repair|down regulation of single strand break repair in telomere|down-regulation of telomere single-strand break repair|negative regulation of telomere SSBR|downregulation of telomere single strand break repair|down regulation of telomeric single strand break repair|down-regulation of telomere SSBR|negative regulation of single strand break repair in telomere jl 2015-01-19T16:24:37Z biological_process owl:Class GO:0018549 biolink:NamedThing methanethiol oxidase activity Catalysis of the reaction: methanethiol + O2 + H2O = formaldehyde + hydrogen sulfide + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl (MM)-oxidase activity|methanethiol:oxygen oxidoreductase activity|methylmercaptan oxidase activity|MT-oxidase activity|methyl mercaptan oxidase activity RHEA:11812|MetaCyc:METHANETHIOL-OXIDASE-RXN|UM-BBD_reactionID:r0209|EC:1.8.3.4 molecular_function owl:Class GO:1990536 biolink:NamedThing phosphoenolpyruvate transmembrane import into Golgi lumen The directed movement of phosphoenolpyruvate into the Golgi lumen across the Golgi membrane. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-14T10:17:01Z biological_process owl:Class GO:0055036 biolink:NamedThing virion membrane The lipid bilayer surrounding a virion. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097147 biolink:NamedThing NOXA-BCL-2 complex A heterodimeric protein complex consisting of NOXA and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:50:14Z cellular_component owl:Class GO:0043842 biolink:NamedThing Kdo transferase activity Catalysis of the reactions: (KDO)-lipid IVA + CMP-3-deoxy-D-manno-octulosonate = KDO2-lipid IVA + CMP, and lipid IVA + CMP-3-deoxy-D-manno-octulosonate = (KDO)-lipid IVA + CMP. tmpzr1t_l9r_go_relaxed.owl 3-deoxy-D-manno-octulosonic-acid transferase activity|kdtA|WaaA EC:2.4.99.13|EC:2.4.99.12|EC:2.4.99.15|EC:2.4.99.14|MetaCyc:KDOTRANS-RXN|MetaCyc:KDOTRANS2-RXN molecular_function owl:Class GO:0046706 biolink:NamedThing CDP catabolic process The chemical reactions and pathways resulting in the breakdown of CDP, cytidine (5'-)diphosphate. tmpzr1t_l9r_go_relaxed.owl CDP breakdown|CDP degradation|CDP catabolism biological_process owl:Class GO:1990767 biolink:NamedThing prostaglandin receptor internalization The process that results in the uptake of a prostaglandin receptor into an endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T19:14:08Z biological_process owl:Class GO:0045173 biolink:NamedThing O-sialoglycoprotein catabolic process The chemical reactions and pathways resulting in the breakdown of O-sialoglycoproteins, glycoproteins which contain sialic acid as one of their carbohydrates. They are often found on or in the cell or tissue membranes and participate in a variety of biological activities. tmpzr1t_l9r_go_relaxed.owl O-sialoglycoprotein breakdown|O-sialoglycoprotein catabolism|O-sialoglycoprotein degradation biological_process owl:Class GO:0035792 biolink:NamedThing host cell postsynaptic membrane A postsynaptic membrane that is part of a host cell. A postsynaptic membrane is a specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters transmit the signal across the synaptic cleft to the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl other organism postsynaptic membrane|other organism post-synaptic membrane bf 2011-04-08T01:21:20Z cellular_component owl:Class GO:0031040 biolink:NamedThing micronucleus A membrane-bounded organelle of ciliated protozoan cells that contains a diploid copy of the cell's complete genome. Sections of contiguous sequence in the macronucleus are often interrupted by internal eliminated sequences (IES), and may be permuted, in micronuclei. Genic transcription is not found in micronuclei. Some ciliate species may contain multiple micronuclei per cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Micronucleus cellular_component owl:Class GO:0002354 biolink:NamedThing central B cell negative selection Any process leading to negative selection of B cells in the bone marrow. tmpzr1t_l9r_go_relaxed.owl central B lymphocyte negative selection|central B-lymphocyte negative selection|central B-cell negative selection biological_process owl:Class GO:0047933 biolink:NamedThing glucose-1,6-bisphosphate synthase activity Catalysis of the reaction: 3-phospho-D-glyceroyl phosphate + alpha-D-glucose 1-phosphate = 3-phospho-D-glycerate + alpha-D-glucose 1,6-bisphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl 3-phospho-D-glyceroyl-phosphate:D-glucose-1-phosphate 6-phosphotransferase activity|glucose-1,6-bisphosphate synthetase activity|glucose 1,6-diphosphate synthase activity|3-phospho-D-glyceroyl-phosphate:alpha-D-glucose-1-phosphate 6-phosphotransferase activity EC:2.7.1.106|RHEA:16769|Reactome:R-HSA-8955760|KEGG_REACTION:R01660|MetaCyc:GLUCOSE-16-BISPHOSPHATE-SYNTHASE-RXN molecular_function owl:Class GO:0090403 biolink:NamedThing oxidative stress-induced premature senescence A cellular senescence process associated with the dismantling of a cell as a response to oxidative stress, e.g. high levels of reactive oxygen species, such as superoxide anions, hydrogen peroxide, and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl tb 2011-01-05T02:37:57Z biological_process owl:Class GO:0090400 biolink:NamedThing stress-induced premature senescence A cellular senescence process associated with the dismantling of a cell as a response to environmental factors such as hydrogen peroxide or X-rays. tmpzr1t_l9r_go_relaxed.owl SIPS tb 2011-01-05T02:32:29Z biological_process owl:Class GO:0000454 biolink:NamedThing snoRNA guided rRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in an rRNA molecule during ribosome biogenesis using a snoRNA guide that targets the position of pseudouridylation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031118 biolink:NamedThing rRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010282 biolink:NamedThing senescence-associated vacuole A lytic vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast. tmpzr1t_l9r_go_relaxed.owl senescence associated vacuole cellular_component owl:Class GO:0047061 biolink:NamedThing glucose-fructose oxidoreductase activity Catalysis of the reaction: D-fructose + D-glucose = D-glucitol + D-glucono-1,5-lactone. tmpzr1t_l9r_go_relaxed.owl D-glucose:D-fructose oxidoreductase activity EC:1.1.99.28|MetaCyc:1.1.99.28-RXN|KEGG_REACTION:R00874|RHEA:20637 molecular_function owl:Class GO:0030332 biolink:NamedThing cyclin binding Binding to cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047804 biolink:NamedThing cysteine-S-conjugate beta-lyase activity Catalysis of the reaction: RS-CH2-CH(NH3+)COO- = RSH + NH3 + pyruvate. tmpzr1t_l9r_go_relaxed.owl glutamine transaminase K/cysteine conjugate beta-lyase activity|cysteine-S-conjugate b-lyase activity|L-cysteine-S-conjugate thiol-lyase (deaminating) activity|cysteine conjugate beta-lyase activity|L-cysteine-S-conjugate thiol-lyase (deaminating; pyruvate-forming) EC:4.4.1.13|MetaCyc:CYSTEINE-S-CONJUGATE-BETA-LYASE-RXN|RHEA:18121 molecular_function owl:Class GO:1904902 biolink:NamedThing ESCRT III complex assembly The aggregation, arrangement and bonding together of a set of components to form an ESCRT III complex. tmpzr1t_l9r_go_relaxed.owl ESCRT III complex formation pad 2016-01-18T13:38:07Z biological_process owl:Class GO:1904895 biolink:NamedThing ESCRT complex assembly The aggregation, arrangement and bonding together of a set of components to form an ESCRT complex. tmpzr1t_l9r_go_relaxed.owl ESCRT complex formation|endosomal sorting complex required for transport formation|endosomal sorting complex required for transport assembly pad 2016-01-12T10:27:11Z biological_process owl:Class GO:0097572 biolink:NamedThing right nucleus One of the two nuclei found in Giardia species (trophozoite stage). It is located on the right side of the cell when viewed from the dorsal side. tmpzr1t_l9r_go_relaxed.owl Due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-18T11:23:01Z cellular_component owl:Class GO:0060843 biolink:NamedThing venous endothelial cell differentiation The process in which a relatively unspecialized endothelial cell acquires specialized features of a venous endothelial cell, a thin flattened cell that lines the inside surfaces of veins. tmpzr1t_l9r_go_relaxed.owl dph 2009-08-12T10:43:40Z biological_process owl:Class GO:0050472 biolink:NamedThing zeatin reductase activity Catalysis of the reaction: dihydrozeatin + NADP(+) = H(+) + NADPH + zeatin. tmpzr1t_l9r_go_relaxed.owl dihydrozeatin:NADP+ oxidoreductase activity KEGG_REACTION:R05702|EC:1.3.1.69|RHEA:12757|MetaCyc:ZEATIN-REDUCTASE-RXN molecular_function owl:Class GO:0007168 biolink:NamedThing receptor guanylyl cyclase signaling pathway A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses guanylyl cyclase activity, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl receptor guanylyl cyclase signalling pathway biological_process owl:Class GO:0070644 biolink:NamedThing vitamin D response element binding Binding to a vitamin D response element (VDRE), a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. tmpzr1t_l9r_go_relaxed.owl VDRE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. mah 2009-05-08T04:23:44Z molecular_function owl:Class GO:0103099 biolink:NamedThing UDP-glucose:5-methylthiopentylhydroximate S-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 5-methylthiopentylhydroximate <=> H+ + 4-methylthiobutyldesulfoglucosinolate + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4324|EC:2.4.1.195 molecular_function owl:Class GO:0017147 biolink:NamedThing Wnt-protein binding Binding to a Wnt-protein, a secreted growth factor involved in signaling. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050044 biolink:NamedThing galactose-6-phosphate isomerase activity Catalysis of the reaction: D-galactose 6-phosphate = D-tagatose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl D-galactose-6-phosphate aldose-ketose-isomerase activity|D-galactose-6-phosphate ketol-isomerase activity MetaCyc:LACTOSE-6-PHOSPHATE-ISOMERASE-RXN|KEGG_REACTION:R03240|EC:5.3.1.26|RHEA:13033 molecular_function owl:Class GO:0031402 biolink:NamedThing sodium ion binding Binding to a sodium ion (Na+). tmpzr1t_l9r_go_relaxed.owl Na+ ion binding molecular_function owl:Class GO:0102483 biolink:NamedThing scopolin beta-glucosidase activity Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.21|MetaCyc:RXN-14179 molecular_function owl:Class GO:0070448 biolink:NamedThing laricitrin 5'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + laricitrin = S-adenosyl-L-homocysteine + syringetin. tmpzr1t_l9r_go_relaxed.owl flavonoid 3',5'-O-dimethyltransferase activity|S-adenosyl-L-methionine:myricetin O-methyltransferase activity|CrCOMT2 MetaCyc:RXN-8452|EC:2.1.1.267|RHEA:25633|KEGG_REACTION:R06816 Note that this term represents one of two reactions that are grouped together in EC:2.1.1.267. molecular_function owl:Class GO:0140363 biolink:NamedThing TIS granule A ribonucleoprotein granule located in the cytoplasm that is formed by the RNA-binding protein TIS11B and RNA molecules, enriched in membrane protein-encoding mRNAs with multiple AU-rich elements. TIS granules are reticular meshworks intertwined with the endoplasmic reticulum (ER). tmpzr1t_l9r_go_relaxed.owl pg 2019-07-25T19:20:58Z cellular_component owl:Class GO:0043843 biolink:NamedThing ADP-specific glucokinase activity Catalysis of the reaction: ADP + D-glucose = AMP + D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl ADP-dependent glucokinase activity|ADP:D-glucose 6-phosphotransferase activity Reactome:R-HSA-5696021|RHEA:11460|EC:2.7.1.147 molecular_function owl:Class GO:0048851 biolink:NamedThing hypophysis formation The process in which the anatomical structures of the hypophysis are generated and organized. The hypophysis is an endocrine gland that secretes hormones that regulate many other glands. tmpzr1t_l9r_go_relaxed.owl pituitary gland formation|pituitary gland biosynthesis|hypophysis biosynthesis biological_process owl:Class GO:0038095 biolink:NamedThing Fc-epsilon receptor signaling pathway A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl Fc-epsilon receptor signalling pathway bf 2012-02-16T05:23:51Z biological_process owl:Class GO:1990088 biolink:NamedThing [methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase activity Catalysis of the reaction: a [methyl-Co(III) methanol-specific corrinoid protein] + coenzyme M = methyl-CoM + a [Co(I) methanol-specific corrinoid protein]. tmpzr1t_l9r_go_relaxed.owl EC:2.1.1.246|RHEA:45208 hjd 2013-05-06T15:07:20Z molecular_function owl:Class GO:0031805 biolink:NamedThing type 8 metabotropic glutamate receptor binding Binding to a type 8 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 8 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0071446 biolink:NamedThing cellular response to salicylic acid stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to salicylate stimulus mah 2009-12-16T04:14:16Z biological_process owl:Class GO:0030721 biolink:NamedThing spectrosome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spectrosome, a germline specific spherical organelle that is the precursor to the fusome. tmpzr1t_l9r_go_relaxed.owl spectrosome organization and biogenesis|spectrosome organisation biological_process owl:Class GO:1990006 biolink:NamedThing amorphous vesicle A cytoplasmic membrane-bounded vesicle first described in dendrites, categorized by smooth membranes, electron-lucent interiors and irregular shapes. Sometimes occurs in clumps. Amorphous vesicles have been found to contain material taken up from the extracellular space, therefore suggesting that they may be part of the endosomal pathway. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1531915298 pr 2012-12-11T14:55:36Z cellular_component owl:Class GO:0033679 biolink:NamedThing 3'-5' DNA/RNA helicase activity Unwinding of a DNA/RNA duplex in the 3' to 5' direction, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl ATP-dependent 3' to 5' DNA/RNA helicase activity|ATP-dependent 3'-5' DNA/RNA helicase activity|3' to 5' DNA/RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 GO:0033681 molecular_function owl:Class GO:0061497 biolink:NamedThing inner plaque of mitotic spindle pole body One of three laminate structures that form the mitotic spindle pole body; the inner plaque is in the nucleus. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-11T09:15:12Z cellular_component owl:Class GO:0099105 biolink:NamedThing ion channel modulating, G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds through activation or inhibition of an ion channel. tmpzr1t_l9r_go_relaxed.owl ion channel modulating, G-protein coupled receptor signaling pathway biological_process owl:Class GO:0050133 biolink:NamedThing N6-hydroxylysine O-acetyltransferase activity Catalysis of the reaction: N(6)-hydroxy-L-lysine + acetyl-CoA = N(6)-acetyl-N(6)-hydroxy-L-lysine + CoA. tmpzr1t_l9r_go_relaxed.owl N6-hydroxylysine:acetyl CoA N6-transacetylase activity|acetyl-CoA:N6-hydroxy-L-lysine 6-acetyltransferase activity|acetyl-CoA:6-N-hydroxy-L-lysine 6-acetyltransferase activity|N(6)-hydroxylysine acetylase activity|N6-hydroxylysine acetylase activity MetaCyc:N6-HYDROXYLYSINE-O-ACETYLTRANSFERASE-RXN|KEGG_REACTION:R03168|EC:2.3.1.102|RHEA:22388 molecular_function owl:Class GO:0098624 biolink:NamedThing 3'-phosphoadenylylselenate reductase activity Catalysis of the reaction: 3'-phosphoadenylylselenate + NADPH => adenosine 3',5'-bisphosphate + selenite + NADP+ + H+. tmpzr1t_l9r_go_relaxed.owl PAPSe reductase activity Reactome:R-HSA-2408548 molecular_function owl:Class GO:1902141 biolink:NamedThing cellular response to inositol Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inositol stimulus. tmpzr1t_l9r_go_relaxed.owl al 2013-05-21T13:42:15Z biological_process owl:Class GO:0099609 biolink:NamedThing microtubule lateral binding Binding to the side of a microtubule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0103091 biolink:NamedThing 2-(7'-methylthio)heptylmalate synthase activity Catalysis of the reaction: 2-oxo-9-methylthiononanoate + acetyl-CoA + H2O <=> H+ + 2-(7'-methylthio)heptylmalate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4175 molecular_function owl:Class GO:0039560 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of host IRF9 activity Any process in which a virus stops, prevents, or reduces a JAK1-STAT signaling cascade in a host organism by reducing the activity of host IRF9 (interferon regulatory factor-9), a transcription factor involved in the innate immune response. Viral infection triggers binding of IRF9 to phosphorylated STAT1 and STAT2, forming the ISGF3 complex. The ISGF3 complex migrates to the nucleus and activates transcription of IFN-responsive genes. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host interferon regulatory factor 9 activity|suppression by virus of host IRF9 activity|inhibition of host IRF9 by virus|inhibition of host interferon regulatory factor-9 by virus https://github.com/geneontology/go-ontology/issues/21986 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-03-09T04:42:08Z biological_process owl:Class GO:0047179 biolink:NamedThing platelet-activating factor acetyltransferase activity Catalysis of the reaction: 1-radyl-2-acyl-sn-glycero-3-phospholipid + 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine = 1-alkyl-2-lyso-sn-glycero-3-phosphocholine + 1-radyl-2-acetyl-sn-glycero-3-phospholipid. tmpzr1t_l9r_go_relaxed.owl PAF acetyltransferase activity|1-alkyl-2-acyl-sn-glycero-3-phosphocholine:1-organyl-2-lyso-sn-glycero-3-phospholipid acetyltransferase activity MetaCyc:2.3.1.149-RXN|EC:2.3.1.149|RHEA:11048 molecular_function owl:Class GO:0051482 biolink:NamedThing positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway Any process that increases the concentration of calcium ions in the cytosol that occurs as part of a PLC-activating G protein-coupled receptor signaling pathway. G-protein-activated PLC hydrolyses phosphatidylinositol-bisphosphate (PIP2) to release diacylglycerol (DAG) and inositol trisphosphate (IP3). IP3 then binds to calcium release channels in the endoplasmic reticulum (ER) to trigger calcium ion release into the cytosol. tmpzr1t_l9r_go_relaxed.owl elevation of cytosolic calcium ion concentration during G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway|positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway|elevation of calcium ion concentration in cytosol during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|elevation of cytoplasmic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|elevation of cytoplasmic calcium ion concentration during G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)|elevation of calcium ion concentration in cytoplasm during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger biological_process owl:Class GO:0044317 biolink:NamedThing rod spherule A specialized neuron projection which is the site of synaptic transmission produced by retinal rod cells. Rod spherules are small round enlargements of the axon (3-5 micrometers diameter) or even extensions of the cell body. tmpzr1t_l9r_go_relaxed.owl rod cell spherule|rod photoreceptor spherule jl 2010-07-14T01:38:07Z cellular_component owl:Class GO:0040004 biolink:NamedThing collagen and cuticulin-based cuticle attachment to epithelium Attaching of a collagen and cuticulin-based cuticle to the epithelium underlying it. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl cuticular attachment to epithelium biological_process owl:Class GO:0047322 biolink:NamedThing [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity Catalysis of the reaction: [3-hydroxy-3-methylglutaryl-CoA reductase (NADPH)] + ATP = [3-hydroxy-3-methylglutaryl-CoA reductase (NADPH)] phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl hydroxymethylglutaryl coenzyme A reductase kinase (phosphorylating) activity|AMPK|reductase kinase activity|hydroxymethylglutaryl-CoA reductase (NADPH) kinase activity|ATP:hydroxymethylglutaryl-CoA reductase (NADPH) phosphotransferase activity|3-hydroxy-3-methylglutaryl coenzyme A reductase kinase activity|3-hydroxy-3-methylglutaryl-CoA reductase kinase activity|hydroxymethylglutaryl-CoA reductase (NADPH2) kinase activity|STK29|HMG-CoA reductase kinase activity|hydroxymethylglutaryl coenzyme A reductase kinase activity|beta-hydroxy-beta-methylglutaryl-CoA reductase kinase activity|hydroxymethylglutaryl-CoA reductase kinase activity EC:2.7.11.31|RHEA:23172|MetaCyc:2.7.1.109-RXN molecular_function owl:Class GO:0097473 biolink:NamedThing retinal rod cell apoptotic process Any apoptotic process in a retinal rod cell, one of the two photoreceptor cell types of the vertebrate retina. tmpzr1t_l9r_go_relaxed.owl rod photoreceptor apoptotic process pr 2013-03-21T09:44:45Z biological_process owl:Class GO:0047611 biolink:NamedThing acetylspermidine deacetylase activity Catalysis of the reaction: N(8)-acetylspermidine + H(2)O = acetate + spermidine. tmpzr1t_l9r_go_relaxed.owl N(1)-acetylspermidine amidohydrolase activity|N8-acetylspermidine amidohydrolase activity|N(8)-acetylspermidine deacetylase activity|8-N-acetylspermidine amidohydrolase activity|N1-acetylspermidine amidohydrolase activity|N(8)-monoacetylspermidine deacetylase activity|N(8)-acetylspermidine amidohydrolase activity|N8-acetylspermidine deacetylase activity|N8-monoacetylspermidine deacetylase activity|N-acetylspermidine deacetylase activity KEGG_REACTION:R07300|RHEA:23928|MetaCyc:ACETYLSPERMIDINE-DEACETYLASE-RXN|EC:3.5.1.48 molecular_function owl:Class GO:0034578 biolink:NamedThing limonene 8-hydratase activity Catalysis of the reaction: limonene + H2O = alpha-terpineol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0916 molecular_function owl:Class GO:0045498 biolink:NamedThing sex comb development The process whose specific outcome is the progression of the sex comb over time, from its formation to the mature structure. The sex combs are the male specific chaetae located on the prothoracic tarsal segment of the prothoracic leg. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140482 biolink:NamedThing iron sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of iron. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19433 pg 2020-06-25T20:58:02Z molecular_function owl:Class GO:0007491 biolink:NamedThing sternite morphogenesis The process in which the anatomical structures of the sternite are generated and organized. The sternite is the plate or sclerite on the underside of a body segment. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0002179 biolink:NamedThing homodimeric serine palmitoyltransferase complex A homodimeric complex which transfers a palmitoyl group onto serine, forming 3-dehydro-D-sphinganine. tmpzr1t_l9r_go_relaxed.owl This complex occurs primarily in bacteria. hjd 2010-12-03T10:50:59Z cellular_component owl:Class GO:0071136 biolink:NamedThing alpha7-beta1 integrin-laminin alpha-2 complex A protein complex that consists of an alpha7-beta1 integrin complex bound to laminin alpha-2. tmpzr1t_l9r_go_relaxed.owl ITGA7-ITGB1-LAMA2 complex mah 2009-11-13T02:29:42Z cellular_component owl:Class GO:0048407 biolink:NamedThing platelet-derived growth factor binding Binding to platelet-derived growth factor. tmpzr1t_l9r_go_relaxed.owl PDGF binding molecular_function owl:Class GO:0052585 biolink:NamedThing oxidoreductase activity, acting on the CH-NH2 group of donors, with a quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.4.5.- 2010-08-13T10:29:06Z molecular_function owl:Class GO:0047196 biolink:NamedThing long-chain-alcohol O-fatty-acyltransferase activity Catalysis of the reaction: a long-chain-alcohol + acyl-CoA = a long-chain ester + CoA. tmpzr1t_l9r_go_relaxed.owl wax ester synthase activity|wax-ester synthase activity|acyl-CoA:long-chain-alcohol O-acyltransferase activity|wax synthase activity Reactome:R-HSA-5696424|MetaCyc:RXNQT-4193|RHEA:38443|Reactome:R-HSA-8848582|EC:2.3.1.75|MetaCyc:2.3.1.75-RXN GO:0103095 molecular_function owl:Class GO:0031934 biolink:NamedThing mating-type region heterochromatin Heterochromatic regions of the chromosome found at silenced mating-type loci. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0004164 biolink:NamedThing diphthine synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + 2-(3-carboxy-3-aminopropyl)-L-histidine = S-adenosyl-L-homocysteine + 2-(3-carboxy-3-(methylammonio)propyl)-L-histidine. tmpzr1t_l9r_go_relaxed.owl diphthine methyltransferase activity|S-adenosyl-L-methionine:2-(3-carboxy-3-aminopropyl)-L-histidine methyltransferase activity|S-adenosyl-L-methionine:elongation factor 2 methyltransferase activity EC:2.1.1.98|MetaCyc:RXN-11370|RHEA:36415|Reactome:R-HSA-5358484 molecular_function owl:Class GO:0033038 biolink:NamedThing bitter taste receptor activity Combining with soluble bitter compounds to initiate a change in cell activity. These receptors are responsible for the sense of bitter taste. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990062 biolink:NamedThing RPAP3/R2TP/prefoldin-like complex A protein complex first characterized in human and comprised of a R2TP module (R2TP complex), a prefoldin-like module (containing both prefoldin-like proteins and canonical prefoldins), WD40 repeat protein Monad/WDR92 and DNA-dependent RNA polymerase subunit RPB5. This complex might have chaperone activity. tmpzr1t_l9r_go_relaxed.owl R2TP/prefoldin-like complex pr 2013-03-20T15:31:12Z cellular_component owl:Class GO:0046702 biolink:NamedThing galactoside 6-L-fucosyltransferase activity Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to a galactoside acceptor molecule, usually an N-glycan, to form an alpha(1,6)-fucosylated galactoside. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990115 biolink:NamedThing RNA polymerase III assembly The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase III complex. tmpzr1t_l9r_go_relaxed.owl RNA Polymerase III complex assembly|DNA-directed RNA polymerase III complex assembly rb 2013-05-31T21:49:19Z biological_process owl:Class GO:0046507 biolink:NamedThing UDPsulfoquinovose synthase activity Catalysis of the reaction: sulfite + UDP-D-glucose = H(2)O + UDP-6-sulfoquinovose. tmpzr1t_l9r_go_relaxed.owl UDP-6-sulfo-6-deoxyglucose sulfohydrolase activity|UDP-sulfoquinovose synthase activity|UDPsulphoquinovose synthase activity|sulfite:UDP-glucose sulfotransferase activity MetaCyc:RXN-1223|EC:3.13.1.1|KEGG_REACTION:R05775|RHEA:13197 molecular_function owl:Class GO:0071796 biolink:NamedThing K6-linked polyubiquitin modification-dependent protein binding Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 6 in the target protein. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-02T02:13:07Z molecular_function owl:Class GO:1990199 biolink:NamedThing MsbA transporter complex An ATP-binding cassette (ABC) transporter complex made up of a dimer of MsbA. Facilitates the export across the plasma membrane of, amongst others, lipid A and lipopolysaccharide. In contrast to most ABC transporter complexes, each chain of the homodimer contains both the transmembrane domain (TMD) and the cytoplasmic ATP-binding domain (NBD). tmpzr1t_l9r_go_relaxed.owl MsbA complex|MsbA dimer bhm 2013-10-01T07:49:41Z cellular_component owl:Class GO:0072373 biolink:NamedThing alpha-carotene epsilon hydroxylase activity Catalysis of the reaction: alpha-carotene + NADPH + O2 + H+ = alpha-cryptoxanthin + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-19T03:52:25Z molecular_function owl:Class GO:0043883 biolink:NamedThing malolactic enzyme activity Catalysis of the reaction: malate + H+ = L-lactate + CO2. tmpzr1t_l9r_go_relaxed.owl MleS This function is part of the process of degradation of L-malic acid by lactic acid bacteria. molecular_function owl:Class GO:0047281 biolink:NamedThing dioxotetrahydropyrimidine phosphoribosyltransferase activity Catalysis of the reaction: pyrophosphate + a 2,4-dioxotetrahydropyrimidine D-ribonucleotide = PRPP + a 2,4-dioxotetrahydropyrimidine. tmpzr1t_l9r_go_relaxed.owl dioxotetrahydropyrimidine-ribonucleotide diphosphorylase activity|2,4-dioxotetrahydropyrimidine-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase activity|dioxotetrahydropyrimidine-ribonucleotide pyrophosphorylase activity|dioxotetrahydropyrimidine phosphoribosyl transferase activity|dioxotetrahydropyrimidine ribonucleotide pyrophosphorylase activity EC:2.4.2.20|RHEA:10232|MetaCyc:2.4.2.20-RXN molecular_function owl:Class GO:0018582 biolink:NamedThing 1-hydroxy-2-naphthoate 1,2-dioxygenase activity Catalysis of the reaction: 1-hydroxy-2-naphthoate + O2 = (3E)-4-(2-carboxyphenyl)-2-oxobut-3-enoate. tmpzr1t_l9r_go_relaxed.owl 1-hydroxy-2-naphthoate:oxygen 1,2-oxidoreductase (decyclizing)|1-hydroxy-2-naphthoic acid dioxygenase activity|1-hydroxy-2-naphthoate dioxygenase activity|1-hydroxy-2-naphthoate-degrading enzyme activity MetaCyc:1.13.11.38-RXN|UM-BBD_reactionID:r0486|RHEA:14749|EC:1.13.11.38 molecular_function owl:Class GO:0016290 biolink:NamedThing palmitoyl-CoA hydrolase activity Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate. tmpzr1t_l9r_go_relaxed.owl palmityl-CoA deacylase activity|palmitoyl-CoA deacylase activity|palmitoyl coenzyme A hydrolase activity|long-chain fatty-acyl-CoA hydrolase activity|palmitoyl thioesterase activity|palmityl thioesterase activity|palmityl thioesterase I|fatty acyl thioesterase I EC:3.1.2.2|RHEA:16645|MetaCyc:PALMITOYL-COA-HYDROLASE-RXN|MetaCyc:PWY-5148 GO:0016293 molecular_function owl:Class GO:0030876 biolink:NamedThing interleukin-20 receptor complex A protein complex composed of an alpha and a beta receptor subunit and an interleukin ligand. In human, Interleukin-19, -20 and -24 bind IL20RA/IL20RB receptor subunits and Interleukin-20 and -24 bind IL22RA1/IL20RB receptor subunits. tmpzr1t_l9r_go_relaxed.owl IL-20 receptor complex cellular_component owl:Class GO:0015841 biolink:NamedThing chromaffin granule amine transport The directed movement of amines into, out of or within chromaffin granules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1903359 biolink:NamedThing lateral cortical node assembly The aggregation, arrangement and bonding together of a set of components to form a lateral cortical node. tmpzr1t_l9r_go_relaxed.owl Skb1-containing cortical node formation|lateral cortical node formation|Skb1-containing cortical node assembly mah 2014-08-21T10:22:51Z biological_process owl:Class GO:0033801 biolink:NamedThing vitexin 2''-O-rhamnoside 7-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + vitexin 2''-O-beta-L-rhamnoside = S-adenosyl-L-homocysteine + 7-O-methylvitexin 2''-O-beta-L-rhamnoside. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:vitexin-2''-O-beta-L-rhamnoside 7-O-methyltransferase activity EC:2.1.1.153|RHEA:11432|MetaCyc:RXN-4981 molecular_function owl:Class GO:0036042 biolink:NamedThing long-chain fatty acyl-CoA binding Binding to a long-chain fatty acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more. tmpzr1t_l9r_go_relaxed.owl long-chain fatty acyl-coenyme A binding https://github.com/geneontology/go-ontology/issues/19443 bf 2011-11-24T04:31:09Z molecular_function owl:Class GO:0043829 biolink:NamedThing tRNA-specific adenosine-37 deaminase activity Catalysis of the reaction: adenosine-37 + H2O = inosine-37 + NH3, in a tRNA-Ala molecule. tmpzr1t_l9r_go_relaxed.owl TAD1|tRNA(Ala)-A37 deaminase activity|tRNA-specific adenosine deaminase 1 molecular_function owl:Class GO:0047153 biolink:NamedThing deoxycytidylate 5-hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dCMP + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + 5-hydroxymethyldeoxycytidylate. tmpzr1t_l9r_go_relaxed.owl deoxycytidylic hydroxymethylase activity|dCMP hydroxymethylase activity|d-cytidine 5'-monophosphate hydroxymethylase activity|5,10-methylenetetrahydrofolate:deoxycytidylate 5-hydroxymethyltransferase activity|deoxycytidylate hydroxymethyltransferase activity|deoxycytidylate hydroxymethylase activity|deoxyCMP hydroxymethylase activity MetaCyc:2.1.2.8-RXN|KEGG_REACTION:R01669|EC:2.1.2.8|RHEA:11280 molecular_function owl:Class GO:0045264 biolink:NamedThing plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) All non-F1 subunits of the plasma membrane hydrogen-transporting ATP synthase, including integral and peripheral plasma membrane proteins. tmpzr1t_l9r_go_relaxed.owl proton-transporting ATP synthase complex, coupling factor F(o)|proton-transporting ATP synthase complex, coupling factor F(0)|hydrogen-transporting ATP synthase, F0 sector cellular_component owl:Class GO:1903554 biolink:NamedThing G protein-coupled receptor signaling pathway involved in defense response to Gram-negative bacterium Any G protein-coupled receptor signaling pathway that is involved in defense response to Gram-negative bacterium. tmpzr1t_l9r_go_relaxed.owl G-protein-coupled receptor protein signalling pathway involved in defense response to Gram-negative bacterium|G protein coupled receptor protein signalling pathway involved in defense response to Gram-negative bacterium|G-protein coupled receptor signalling pathway involved in defence response to Gram-negative bacterium|GPCR signalling pathway involved in Gram-negative antibacterial peptide activity|G protein coupled receptor protein signaling pathway involved in defense response to Gram-negative bacteria|G-protein-coupled receptor protein signalling pathway involved in Gram-negative antibacterial peptide activity|G-protein coupled receptor signalling pathway involved in defense response to Gram-negative bacterium|G protein coupled receptor protein signaling pathway involved in Gram-negative antibacterial peptide activity|GPCR signaling pathway involved in defense response to Gram-negative bacterium|G protein coupled receptor protein signalling pathway involved in defense response to Gram-negative bacteria|G-protein coupled receptor protein signaling pathway involved in defense response to Gram-negative bacterium|G-protein-coupled receptor protein signaling pathway involved in defence response to Gram-negative bacteria|G protein coupled receptor protein signaling pathway involved in defense response to Gram-negative bacterium|G-protein coupled receptor protein signaling pathway involved in defence response to Gram-negative bacteria|G-protein-coupled receptor protein signaling pathway involved in defence response to Gram-negative bacterium|G-protein coupled receptor protein signal transduction involved in defense response to Gram-negative bacteria|G-protein coupled receptor protein signal transduction involved in defence response to Gram-negative bacteria|GPCR signaling pathway involved in defense response to Gram-negative bacteria|G-protein coupled receptor protein signal transduction involved in defence response to Gram-negative bacterium|G protein coupled receptor protein signalling pathway involved in defence response to Gram-negative bacteria|G-protein-coupled receptor protein signalling pathway involved in defence response to Gram-negative bacterium|G-protein coupled receptor protein signal transduction involved in Gram-negative antibacterial peptide activity|GPCR signaling pathway involved in defence response to Gram-negative bacteria|G-protein coupled receptor protein signaling pathway involved in defence response to Gram-negative bacterium|G-protein coupled receptor protein signal transduction involved in defense response to Gram-negative bacterium|G-protein coupled receptor signaling pathway involved in Gram-negative antibacterial peptide activity|G-protein coupled receptor protein signaling pathway involved in Gram-negative antibacterial peptide activity|GPCR signalling pathway involved in defence response to Gram-negative bacterium|GPCR signaling pathway involved in Gram-negative antibacterial peptide activity|G-protein-coupled receptor protein signaling pathway involved in defense response to Gram-negative bacterium|G-protein coupled receptor protein signaling pathway involved in defense response to Gram-negative bacteria|G protein coupled receptor protein signaling pathway involved in defence response to Gram-negative bacterium|G protein coupled receptor protein signalling pathway involved in Gram-negative antibacterial peptide activity|G-protein coupled receptor signalling pathway involved in defense response to Gram-negative bacteria|G-protein-coupled receptor protein signalling pathway involved in defence response to Gram-negative bacteria|GPCR signaling pathway involved in defence response to Gram-negative bacterium|GPCR signalling pathway involved in defense response to Gram-negative bacterium|G-protein-coupled receptor protein signalling pathway involved in defense response to Gram-negative bacteria|GPCR signalling pathway involved in defence response to Gram-negative bacteria|G-protein coupled receptor signaling pathway involved in defence response to Gram-negative bacterium|G protein coupled receptor protein signaling pathway involved in defence response to Gram-negative bacteria|G-protein coupled receptor signalling pathway involved in Gram-negative antibacterial peptide activity|G-protein coupled receptor signaling pathway involved in defence response to Gram-negative bacteria|G-protein coupled receptor signaling pathway involved in defense response to Gram-negative bacteria|GPCR signalling pathway involved in defense response to Gram-negative bacteria|G-protein coupled receptor signalling pathway involved in defence response to Gram-negative bacteria|G-protein-coupled receptor protein signaling pathway involved in Gram-negative antibacterial peptide activity|G protein coupled receptor protein signalling pathway involved in defence response to Gram-negative bacterium kmv 2014-10-20T17:51:13Z biological_process owl:Class GO:0061847 biolink:NamedThing response to cholecystokinin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholecystokinin stimulus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140464 biolink:NamedThing silent mating-type cassette heterochromatin organization The organization of chromatin into heterochromatin at a silent mating-type cassette locus. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19396 pg 2020-05-13T05:13:24Z biological_process owl:Class GO:0004307 biolink:NamedThing ethanolaminephosphotransferase activity Catalysis of the reaction: CDP-ethanolamine + 1,2-diacylglycerol = CMP + a phosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl CDP-ethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase activity|diacylglycerol ethanolaminephosphotransferase activity|phosphorylethanolamine-glyceride transferase activity|EPT|CDPethanolamine diglyceride phosphotransferase activity MetaCyc:ETHANOLAMINEPHOSPHOTRANSFERASE-RXN|RHEA:32943|Reactome:R-HSA-1482962|EC:2.7.8.1 molecular_function owl:Class GO:0008758 biolink:NamedThing UDP-2,3-diacylglucosamine hydrolase activity Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP. tmpzr1t_l9r_go_relaxed.owl RHEA:25213|MetaCyc:LIPIDXSYNTHESIS-RXN molecular_function owl:Class GO:0008853 biolink:NamedThing exodeoxyribonuclease III activity Catalysis of the degradation of double-stranded DNA. It acts progressively in a 3' to 5' direction, releasing 5'-phosphomononucleotides. tmpzr1t_l9r_go_relaxed.owl Escherichia coli exonuclease III|E. coli exonuclease III|exonuclease III activity|E. coli exonuclease III activity|endoribonuclease III MetaCyc:3.1.11.2-RXN|EC:3.1.11.2 molecular_function owl:Class GO:0045870 biolink:NamedThing positive regulation of single stranded viral RNA replication via double stranded DNA intermediate Any process that activates or increases the frequency, rate or extent of retroviral genome replication. tmpzr1t_l9r_go_relaxed.owl upregulation of retroviral genome replication|stimulation of retroviral genome replication|up regulation of retroviral genome replication|activation of retroviral genome replication|up-regulation of retroviral genome replication|positive regulation of retroviral genome replication biological_process owl:Class GO:0102258 biolink:NamedThing 1,3-diacylglycerol acylhydrolase activity Catalysis of the reaction: H2O + a 1,3-diglyceride = a monoglyceride + a fatty acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12433 molecular_function owl:Class GO:1900285 biolink:NamedThing regulation of cellotriose transport Any process that modulates the frequency, rate or extent of cellotriose transport. tmpzr1t_l9r_go_relaxed.owl tt 2012-04-05T05:56:46Z biological_process owl:Class GO:0061970 biolink:NamedThing maintenance of right sidedness The organization process that preserves the right sidedness in an organism's body plan or part of an organism with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T16:45:33Z biological_process owl:Class GO:0030352 biolink:NamedThing inositol-1,4,5,6-tetrakisphosphate 6-phosphatase activity Catalysis of the reaction: inositol-1,4,5,6-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071117 biolink:NamedThing alpha5-beta1 integrin-fibronectin-NOV complex A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and the extracellular matrix protein NOV. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-FN-1-NOV complex mah 2009-11-13T02:19:52Z cellular_component owl:Class GO:0000401 biolink:NamedThing open form four-way junction DNA binding Binding to a DNA segment containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over. tmpzr1t_l9r_go_relaxed.owl open form Holliday junction binding molecular_function owl:Class GO:0102844 biolink:NamedThing 1-18:2-2-16:1-monogalactosyldiacylglycerol desaturase activity (SN2-16:2 forming) Catalysis of the reaction: 1-18:2-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8305|EC:1.14.19.23 molecular_function owl:Class GO:0047554 biolink:NamedThing 2-pyrone-4,6-dicarboxylate lactonase activity Catalysis of the reaction: 2-oxo-2H-pyran-4,6-dicarboxylate + H(2)O = 4-carboxy-2-hydroxyhexa-2,4-dienedioate + H(+). tmpzr1t_l9r_go_relaxed.owl 2-pyrone-4,6-dicarboxylate lactonohydrolase activity KEGG_REACTION:R04277|RHEA:10644|EC:3.1.1.57|MetaCyc:RXN-2462 molecular_function owl:Class GO:0102671 biolink:NamedThing 6a-hydroxymaackiain-3-O-methyltransferase activity Catalysis of the reaction: (+)-6a-hydroxymaackiain + S-adenosyl-L-methionine <=> H+ + (+)-pisatin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4002|RHEA:35471|EC:2.1.1.270 molecular_function owl:Class GO:0050088 biolink:NamedThing mannose-6-phosphate 6-reductase activity Catalysis of the reaction: D-mannitol 1-phosphate + NADP(+) = D-mannose 6-phosphate + 3 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl D-mannitol-1-phosphate:NADP+ 6-oxidoreductase activity|6-phosphomannose reductase activity|NADPH-dependent mannose 6-phosphate reductase activity|NADP-dependent mannose-6-P:mannitol-1-P oxidoreductase activity|NADPH-dependent M6P reductase activity|NADPH-mannose-6-P reductase activity|mannose-6-phosphate reductase activity MetaCyc:MANNOSE-6-PHOSPHATE-6-REDUCTASE-RXN|RHEA:14925|EC:1.1.1.224|KEGG_REACTION:R01817 molecular_function owl:Class GO:0034007 biolink:NamedThing S-linalool synthase activity Catalysis of the reaction: geranyl diphosphate + H(2)O = (S)-linalool + diphosphate. tmpzr1t_l9r_go_relaxed.owl 3S-linalool synthase activity|LIS|geranyl-diphosphate diphosphate-lyase [(3S)-linalool-forming] activity MetaCyc:4.2.3.25-RXN|EC:4.2.3.25|RHEA:24116|KEGG_REACTION:R07631 molecular_function owl:Class GO:1905519 biolink:NamedThing negative regulation of presynaptic active zone assembly Any process that stops, prevents or reduces the frequency, rate or extent of presynaptic active zone assembly. tmpzr1t_l9r_go_relaxed.owl down regulation of pre-synaptic active zone formation|down regulation of presynaptic active zone assembly|negative regulation of presynaptic active zone formation|negative regulation of pre-synaptic active zone assembly|down regulation of pre-synaptic active zone assembly|downregulation of pre-synaptic active zone component formation|inhibition of pre-synaptic active zone formation|down-regulation of presynaptic active zone assembly|downregulation of presynaptic active zone assembly|downregulation of presynaptic active zone formation|negative regulation of pre-synaptic active zone component assembly|down-regulation of pre-synaptic active zone component assembly|inhibition of pre-synaptic active zone assembly|downregulation of pre-synaptic active zone assembly|inhibition of presynaptic active zone assembly|down regulation of presynaptic active zone formation|downregulation of pre-synaptic active zone component assembly|down regulation of pre-synaptic active zone component formation|down-regulation of pre-synaptic active zone formation|down-regulation of presynaptic active zone formation|inhibition of pre-synaptic active zone component assembly|inhibition of presynaptic active zone formation|negative regulation of pre-synaptic active zone component formation|downregulation of pre-synaptic active zone formation|down-regulation of pre-synaptic active zone assembly|down regulation of pre-synaptic active zone component assembly|inhibition of pre-synaptic active zone component formation|down-regulation of pre-synaptic active zone component formation|negative regulation of pre-synaptic active zone formation rl 2016-10-01T09:38:00Z biological_process owl:Class GO:0036381 biolink:NamedThing pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity Catalysis of the reaction: D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + L-glutamine = pyridoxal 5'-phosphate + L-glutamate + 3 H2O + phosphate. The reaction occurs in two steps: L-glutamine + H2O = L-glutamate + NH3, and subsequently D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + NH3 = pyridoxal 5'-phosphate + 4 H2O + phosphate. tmpzr1t_l9r_go_relaxed.owl pyridoxal 5'-phosphate synthase (glutamine hydrolyzing) activity|PdxST activity EC:4.3.3.6|RHEA:31507|MetaCyc:RXN-11322|KEGG_REACTION:R10089 bf 2013-05-23T11:15:37Z molecular_function owl:Class GO:0021568 biolink:NamedThing rhombomere 2 development The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047156 biolink:NamedThing acetoin-ribose-5-phosphate transaldolase activity Catalysis of the reaction: D-ribose 5-phosphate + acetoin = 1-deoxy-D-altro-heptulose 7-phosphate + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl 1-deoxy-D-altro-heptulose-7-phosphate synthetase activity|3-hydroxybutan-3-one:D-ribose-5-phosphate aldehydetransferase activity|1-deoxy-D-altro-heptulose-7-phosphate synthase activity|3-hydroxybutan-2-one:D-ribose-5-phosphate aldehydetransferase activity RHEA:21504|MetaCyc:2.2.1.4-RXN|KEGG_REACTION:R02345|EC:2.2.1.4 molecular_function owl:Class GO:0004382 biolink:NamedThing guanosine-diphosphatase activity Catalysis of the reaction: GDP + H2O = GMP + phosphate. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphatase activity|GDP phosphohydrolase activity|guanosine 5'-diphosphatase activity|GDPase activity RHEA:22156|EC:3.6.1.42|MetaCyc:GUANOSINE-DIPHOSPHATASE-RXN molecular_function owl:Class GO:0044685 biolink:NamedThing tetrahydromethanopterin-dependent serine hydroxymethyltransferase activity Catalysis of the reaction: tetrahydromethanopterin + L-serine = 5,10-methylenetetrahydromethanopterin + glycine + H2O. tmpzr1t_l9r_go_relaxed.owl EC:2.1.2.- jl 2012-08-15T14:13:07Z molecular_function owl:Class GO:1904789 biolink:NamedThing regulation of mitotic actomyosin contractile ring maintenance Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring maintenance. tmpzr1t_l9r_go_relaxed.owl regulation of contractile ring maintenance involved in cell cycle cytokinesis involved in mitotic cell cycle|regulation of cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle involved in mitotic cell cycle mah 2015-11-06T15:42:49Z biological_process owl:Class GO:0102517 biolink:NamedThing oleate 12-hydroxylase activity Catalysis of the reaction: oleoyl-CoA + NADH + O2 + H+ = ricinoleyl-CoA + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14487 molecular_function owl:Class GO:0047795 biolink:NamedThing cyclohexane-1,2-diol dehydrogenase activity Catalysis of the reaction: trans-cyclohexane-1,2-diol + NAD+ = 2-hydroxycyclohexan-1-one + NADH. tmpzr1t_l9r_go_relaxed.owl trans-cyclohexane-1,2-diol:NAD+ 1-oxidoreductase activity RHEA:18141|MetaCyc:CYCLOHEXANE-12-DIOL-DEHYDROGENASE-RXN|EC:1.1.1.174 molecular_function owl:Class GO:0031486 biolink:NamedThing myosin XVI complex A myosin complex containing a class XVI myosin heavy chains and associated light chains; myosin XVI heavy chains contain ankyrin repeat. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035654 biolink:NamedThing clathrin-coated vesicle cargo loading, AP-3-mediated Formation of a macromolecular complex between proteins of the AP-3 adaptor complex and proteins and/or lipoproteins that are going to be transported by a clathrin-coated vesicle. In some cases, the AP-3 complex is a heterotetrameric AP-type membrane coat adaptor complex that, in some organisms, links clathrin to the membrane surface of a vesicle. tmpzr1t_l9r_go_relaxed.owl cargo loading into clathrin-coated vesicle, AP-3-mediated bf 2011-01-25T11:02:30Z biological_process owl:Class GO:0030322 biolink:NamedThing stabilization of membrane potential The accomplishment of a non-fluctuating membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048458 biolink:NamedThing floral whorl formation The process that gives rise to the floral whorl. This process pertains to the initial formation of a structure from unspecified parts. tmpzr1t_l9r_go_relaxed.owl GO:0048415 biological_process owl:Class GO:0005118 biolink:NamedThing sevenless binding Binding to a sevenless (sev) protein, a receptor tyrosine kinase. tmpzr1t_l9r_go_relaxed.owl sev ligand|sev binding|sevenless ligand molecular_function owl:Class GO:0033857 biolink:NamedThing diphosphoinositol-pentakisphosphate kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol 5-diphosphate pentakisphosphate = ADP + 1D-myo-inositol bisdiphosphate tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl PPIP5K|ATP:5-diphospho-1D-myo-inositol-pentakisphosphate phosphotransferase activity|PP-InsP5 kinase activity|PPIP5K2|PP-IP5 kinase activity|PPIP5K1|VIP2|VIP1 EC:2.7.4.24 molecular_function owl:Class GO:1904515 biolink:NamedThing positive regulation of TORC2 signaling Any process that activates or increases the frequency, rate or extent of TORC2 signaling. tmpzr1t_l9r_go_relaxed.owl up-regulation of TORC2 signaling|upregulation of TORC2 signaling|activation of TORC2 signal transduction|up-regulation of TORC2 signal transduction|upregulation of TORC2 signal transduction|up regulation of TORC2 signal transduction|up regulation of TORC2 signaling|activation of TORC2 signaling|positive regulation of TORC2 signal transduction al 2015-07-28T16:09:55Z biological_process owl:Class GO:0071141 biolink:NamedThing SMAD protein complex A protein complex that consists of only SMAD proteins; may be homomeric or heteromeric. Heteromeric complexes act as transcription factors while homomeric complexes exist but are transcriptionally inactive. Hetero- versus homotrimerization is largely enthalpy driven. tmpzr1t_l9r_go_relaxed.owl SMAD complex mah 2009-11-16T02:28:59Z cellular_component owl:Class GO:0043759 biolink:NamedThing methylbutanoate-CoA ligase activity Catalysis of the reaction: ATP + 2-methylbutanoate + CoA = AMP + diphosphate + 2-methylbutanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl branched chain acyl CoA synthetase (ADP-forming) activity|branched-chain acyl CoA synthetase (ADP-forming) activity|branched chain acyl-CoA synthetase (ADP-forming) activity|branched-chain acyl-CoA synthetase (ADP-forming) activity https://github.com/geneontology/go-ontology/issues/18967 RHEA:46180 molecular_function owl:Class GO:0099608 biolink:NamedThing regulation of action potential firing pattern Any process that regulates the temporal pattern of a sequence of action potentials in a neuron. tmpzr1t_l9r_go_relaxed.owl spike train sculpting biological_process owl:Class GO:0051800 biolink:NamedThing phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity Catalysis of the reaction: phosphatidylinositol-3,4-bisphosphate + H2O = phosphatidylinositol-4-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl PTEN activity Reactome:R-HSA-1676149|Reactome:R-HSA-1676204 molecular_function owl:Class GO:0102907 biolink:NamedThing sesquisabinene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> diphosphoric acid + sesquisabinene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8622 molecular_function owl:Class GO:0004137 biolink:NamedThing deoxycytidine kinase activity Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP. tmpzr1t_l9r_go_relaxed.owl arabinofuranosylcytosine kinase activity|Ara-C kinase activity|NTP:deoxycytidine 5'-phosphotransferase activity|deoxycytidine-cytidine kinase activity|2'-deoxycytidine kinase activity|deoxycytidine kinase (phosphorylating) RHEA:20061|EC:2.7.1.74|MetaCyc:DEOXYCYTIDINE-KINASE-RXN molecular_function owl:Class GO:0042632 biolink:NamedThing cholesterol homeostasis Any process involved in the maintenance of an internal steady state of cholesterol within an organism or cell. tmpzr1t_l9r_go_relaxed.owl regulation of cholesterol homeostasis|positive regulation of cholesterol homeostasis GO:2000188|GO:2000189 biological_process owl:Class GO:0055092 biolink:NamedThing sterol homeostasis Any process involved in the maintenance of an internal steady state of sterol within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102770 biolink:NamedThing inositol phosphorylceramide synthase activity Catalysis of the reaction: an L-1-phosphatidyl-inositol + a dihydroceramide = an inositol phosphodihydroceramide + a 1,2-diacyl-sn-glycerol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7795 molecular_function owl:Class GO:0015817 biolink:NamedThing histidine transport The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl L-histidine transport biological_process owl:Class GO:0036336 biolink:NamedThing dendritic cell migration The movement of a dendritic cell within or between different tissues and organs of the body. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-05T10:24:46Z biological_process owl:Class GO:0034013 biolink:NamedThing aliphatic aldoxime dehydratase activity Catalysis of the reaction: an aliphatic aldoxime = an aliphatic nitrile + H2O. tmpzr1t_l9r_go_relaxed.owl aliphatic aldoxime hydro-lyase activity|OxdA|aliphatic aldoxime hydro-lyase (aliphatic-nitrile-forming) activity EC:4.99.1.5|RHEA:11316|MetaCyc:4.99.1.5-RXN molecular_function owl:Class GO:0032359 biolink:NamedThing provirus excision The molecular events that lead to the excision of a viral genome from the host genome. tmpzr1t_l9r_go_relaxed.owl prophage excision biological_process owl:Class GO:0014886 biolink:NamedThing transition between slow and fast fiber The process of conversion of slow-contracting muscle fibers to a faster character. This may involve increasing of contractile rate, fast myosin gene induction, increase in glycolytic metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation. tmpzr1t_l9r_go_relaxed.owl transition between slow and fast fibre|transition slow-fast fiber|transition slow-fast fibre biological_process owl:Class GO:0090632 biolink:NamedThing N-glycolylneuraminic acid (Neu5Gc) cytidylyltransferase activity Catalysis of the reaction: CTP + Neu5Gc = diphosphate + CMP-Neu5Gc. tmpzr1t_l9r_go_relaxed.owl CMP-Neu5Gc synthetase activity tb 2015-03-19T15:05:54Z molecular_function owl:Class GO:0052092 biolink:NamedThing positive regulation of nutrient release by host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the release of nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by symbiont of nutrient release from host|stimulation by symbiont of nutrient release from host|upregulation by symbiont of nutrient release from host|positive regulation by symbiont of nutrient release from host|up regulation by symbiont of nutrient release from host|promotion of nutrient release from host|activation by symbiont of nutrient release from host biological_process owl:Class GO:0052091 biolink:NamedThing modulation of nutrient release by host Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of nutrient release from host biological_process owl:Class GO:0051116 biolink:NamedThing cobaltochelatase activity Catalysis of the reaction: ATP + Co(2+) + H(2)O + hydrogenobyrinate a,c-diamide = ADP + cob(II)yrinate a,c diamide + 4 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl hydrogenobyrinic-acid-a,c-diamide:cobalt cobalt-ligase (ADP-forming)|CobNST|hydrogenobyrinic acid a,c-diamide cobaltochelatase activity|CobN-CobST RHEA:15341|KEGG_REACTION:R05227|EC:6.6.1.2|MetaCyc:R342-RXN molecular_function owl:Class GO:0048027 biolink:NamedThing mRNA 5'-UTR binding Binding to an mRNA molecule at its 5' untranslated region. tmpzr1t_l9r_go_relaxed.owl mRNA 5' UTR binding molecular_function owl:Class GO:0019186 biolink:NamedThing acyl-CoA N-acyltransferase activity Catalysis of the transfer of an acyl group from acyl-CoA to a nitrogen atom on an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030056 biolink:NamedThing hemidesmosome A cell-substrate junction (attachment structure) found in epithelial cells that links intermediate filaments to extracellular matrices via transmembrane complexes. In vertebrates, hemidesmosomes mediate contact between the basal side of epithelial cells and the basal lamina. In C. elegans, hemidesmosomes connect epithelial cells to distinct extracellular matrices on both the apical and basal cell surfaces. tmpzr1t_l9r_go_relaxed.owl trans-epithelial attachment|epidermal attachment structure|fibrous organelle|hemi-adherens junction Wikipedia:Hemidesmosome cellular_component owl:Class GO:0000994 biolink:NamedThing RNA polymerase III core binding Binding to an RNA polymerase III core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits. tmpzr1t_l9r_go_relaxed.owl krc 2010-08-11T03:58:58Z molecular_function owl:Class GO:0002348 biolink:NamedThing central B cell positive selection Any process leading to positive selection of B cells in the bone marrow. Positive selection is the process in which B or T cells are selected to survive based on signaling through their antigen receptors. tmpzr1t_l9r_go_relaxed.owl central B-cell positive selection|central B lymphocyte positive selection|central B-lymphocyte positive selection biological_process owl:Class GO:0018743 biolink:NamedThing phenanthrene-9,10-epoxide hydrolase (9R,10R-forming) activity Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9R,10R-dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0560|EC:3.3.2.- molecular_function owl:Class GO:0140092 biolink:NamedThing bBAF complex A brain-specific SWI/SNF-type complex that contains eight or nine proteins, including both conserved (core) and nonconserved components; contains the ATPase product of either the SMARCA4/BAF190A/BRG1 gene, the mammalian ortholog of the yeast SNF2 gene, or the SMARCA2/BAF190B/BRM gene, the mammalian ortholog of the Drosophila brm (brahma) gene, or an ortholog of either of these genes. Compared to the neuron-specific nBAF complex (GO:0071565) it does not contain DPF1, DPF3 or SMARCC1 or their orthologs. May contain PB1/BAF180. tmpzr1t_l9r_go_relaxed.owl brain-specific BAF complex|brain-specific SWI/SNF complex pg 2017-09-05T09:22:41Z cellular_component owl:Class GO:0044720 biolink:NamedThing negative regulation of imaginal disc-derived wing size Any process that reduces the size of an imaginal disc-derived wing. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-18T13:50:49Z biological_process owl:Class GO:0047135 biolink:NamedThing bis-gamma-glutamylcystine reductase activity Catalysis of the reaction: 2 L-gamma-glutamyl-L-cysteine + NADP(+) = bis-gamma-glutamylcystine + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl Bis-gamma-glutamylcystine reductase (NADPH)|bis-gamma-glutamylcystine reductase (NADPH) activity|gamma-glutamylcysteine:NADP+ oxidoreductase activity|NADPH2:bis-gamma-glutamylcysteine oxidoreductase activity|NADPH:bis-gamma-glutamylcysteine oxidoreductase activity|bis-g-glutamylcystine reductase (NADPH) activity KEGG_REACTION:R02742|RHEA:11980|MetaCyc:1.6.4.9-RXN|EC:1.8.1.13 molecular_function owl:Class GO:0010217 biolink:NamedThing cellular aluminum ion homeostasis Any process involved in the maintenance of an internal steady state of aluminum ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular aluminium ion homeostasis biological_process owl:Class GO:0008908 biolink:NamedThing isochorismatase activity Catalysis of the reaction: H(2)O + isochorismate = 2,3-dihydroxy-2,3-dihydrobenzoate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydro-2,3-dihydroxybenzoate synthase activity|2,3 dihydro-2,3 dihydroxybenzoate synthase activity|2,3-dihydroxy-2,3-dihydrobenzoic synthase activity|2,3-dihydroxy-2,3-dihydrobenzoate synthase activity|isochorismate pyruvate-hydrolase activity RHEA:11112|KEGG_REACTION:R03037|EC:3.3.2.1|MetaCyc:ISOCHORMAT-RXN molecular_function owl:Class GO:0030058 biolink:NamedThing amine dehydrogenase activity Catalysis of the reaction: an aliphatic amine + an acceptor (A) + H2O = an aldehyde + a reduced acceptor (AH2) + NH4+. tmpzr1t_l9r_go_relaxed.owl MADH activity|primary-amine dehydrogenase activity|methylamine dehydrogenase activity|primary-amine:acceptor oxidoreductase (deaminating)|amine: (acceptor) oxidoreductase (deaminating) https://github.com/geneontology/go-ontology/issues/21650 RHEA:51128|UM-BBD_enzymeID:e0058 molecular_function owl:Class GO:0051562 biolink:NamedThing negative regulation of mitochondrial calcium ion concentration Any process that decreases the concentration of calcium ions in mitochondria. tmpzr1t_l9r_go_relaxed.owl mitochondrial calcium ion concentration reduction|reduction of calcium ion concentration in mitochondria|reduction of calcium ion concentration in mitochondrion|reduction of mitochondrial calcium ion concentration biological_process owl:Class GO:0002352 biolink:NamedThing B cell negative selection Any process leading to negative selection in B cells. Mechanisms of negative selection include anergy and deletion. tmpzr1t_l9r_go_relaxed.owl B-lymphocyte negative selection|B lymphocyte negative selection|B-cell negative selection biological_process owl:Class GO:0050121 biolink:NamedThing N-acylglucosamine 2-epimerase activity Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine 2-epimerase activity|GlcNAc 2-epimerase activity|N-acetyl-D-glucosamine 2-epimerase activity|N-acyl-D-glucosamine 2-epimerase activity|acylglucosamine 2-epimerase activity RHEA:19033|EC:5.1.3.8|Reactome:R-HSA-6803761|MetaCyc:N-ACYLGLUCOSAMINE-2-EPIMERASE-RXN molecular_function owl:Class GO:0047657 biolink:NamedThing alpha-1,3-glucan synthase activity Catalysis of the reaction: UDP-glucose + [alpha-D-glucosyl-(1,3)]n = UDP + [alpha-D-glucosyl-(1,3)]n+1. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:alpha-D-(1->3)-glucan 3-alpha-D-glucosyltransferase activity|uridine diphosphoglucose-1,3-alpha-glucan glucosyltransferase activity|1,3-alpha-D-glucan synthase activity|a-1,3-glucan synthase activity|1,3-alpha-glucan synthase activity|UDPglucose:alpha-D-(1->3)-glucan 3-alpha-D-glucosyltransferase activity MetaCyc:ALPHA-13-GLUCAN-SYNTHASE-RXN|RHEA:19749|EC:2.4.1.183 molecular_function owl:Class GO:1905543 biolink:NamedThing interleukin-15 receptor complex A protein complex that binds interleukin-15 (IL-15) and that consists of, at a minimum, an interleukin, an alpha, beta and gamma chain as well as optional additional kinase subunits. The alpha chain is unique to binds IL-15 while it shares the beta chain with the IL-2 receptor and the cytokine receptor common gamma chain with multiple interleukin receptors. tmpzr1t_l9r_go_relaxed.owl interleukin-15-receptor complex|IL15-receptor complex|IL-15 receptor complex|IL-15-receptor complex|IL15 receptor complex An example of this is IL15RA in human (Q13261) in PMID:23104097 (inferred from physical interaction). bhm 2016-10-10T13:38:12Z cellular_component owl:Class GO:0097600 biolink:NamedThing exoxylanase activity A xylanase activity that acts on one of the ends of a xylan polymer which does not contain side chains. tmpzr1t_l9r_go_relaxed.owl pr 2014-05-06T13:48:27Z molecular_function owl:Class GO:0052826 biolink:NamedThing inositol hexakisphosphate 2-phosphatase activity Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = myo-inositol 1,3,4,5,6-pentakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl 1D-myo-inositol-hexakisphosphate 2-phosphohydrolase activity Reactome:R-HSA-1855225|EC:3.1.3.62 ai 2011-11-29T09:52:14Z molecular_function owl:Class GO:0008824 biolink:NamedThing cyanate hydratase activity Catalysis of the reaction: cyanate + H2O = carbamate. tmpzr1t_l9r_go_relaxed.owl cyanate C-N-lyase activity|carbamate hydro-lyase activity|cyanate hydrolase activity|cyanase activity|cyanate aminohydrolase activity|cyanate lyase activity MetaCyc:R524-RXN|RHEA:11120|UM-BBD_reactionID:r0608|EC:4.2.1.104 Note that this function was formerly EC:4.3.99.1. molecular_function owl:Class GO:0010406 biolink:NamedThing classical arabinogalactan protein metabolic process The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein containing Hyp, Ala, Ser, Thr and Gly as the major amino acid constituents, and the C-terminus is GPI anchored. tmpzr1t_l9r_go_relaxed.owl classical-arabinogalactan protein metabolism biological_process owl:Class GO:0007089 biolink:NamedThing traversing start control point of mitotic cell cycle A cell cycle process by which a cell commits to entering S phase via a positive feedback mechanism between the regulation of transcription and G1 CDK activity. tmpzr1t_l9r_go_relaxed.owl GO:0000081 biological_process owl:Class GO:0044258 biolink:NamedThing intestinal lipid catabolic process The chemical reactions and pathways resulting in the breakdown into fatty acids and monoglycerides of lipids in the small intestine. Lipids are broken down by lipases released by the pancreas. tmpzr1t_l9r_go_relaxed.owl intestinal lipid breakdown|intestinal lipid catabolism|intestinal lipid degradation biological_process owl:Class GO:0106357 biolink:NamedThing glycerol-1-phosphate dehydrogenase [NAD+] activity Catalysis of the reaction: NAD+ + sn-glycerol 1-phosphate = dihydroxyacetone phosphate + H+ + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:21412 hjd 2021-02-02T06:07:55Z molecular_function owl:Class GO:0097522 biolink:NamedThing protein-DNA ISRE complex A protein-DNA complex formed through interaction of the protein(s) with an interferon-stimulated response element (ISRE) in the DNA. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-17T14:35:07Z cellular_component owl:Class GO:0052787 biolink:NamedThing alpha-linked polysaccharide catabolism to maltopentaose The breakdown of large alpha-linked polysaccharides by hydrolysis of (1->4)-alpha-D-glucosidic linkages to yield maltopentaose. tmpzr1t_l9r_go_relaxed.owl alpha-amylase-mediated polysaccharide catabolism, producing maltopentaose|maltopentaose-forming alpha-amylase activity ai 2011-10-04T10:06:44Z biological_process owl:Class GO:0034957 biolink:NamedThing 3-nitrophenol nitroreductase activity Catalysis of the reaction: 3-nitrophenol + 2 NADH + 2 H+ = 3-hydroxyaminophenol + 2 NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1495 molecular_function owl:Class GO:0047681 biolink:NamedThing aryl-alcohol dehydrogenase (NADP+) activity Catalysis of the reaction: an aromatic alcohol + NADP+ = an aromatic aldehyde + NADPH. tmpzr1t_l9r_go_relaxed.owl NADPH-linked benzaldehyde reductase activity|aryl-alcohol:NADP+ oxidoreductase activity|aryl alcohol dehydrogenase (nicotinamide adenine dinucleotide phosphate) MetaCyc:ARYL-ALCOHOL-DEHYDROGENASE-NADP+-RXN|EC:1.1.1.91|RHEA:17761 molecular_function owl:Class GO:0045296 biolink:NamedThing cadherin binding Binding to cadherin, a type I membrane protein involved in cell adhesion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018935 biolink:NamedThing aerobic nitrilotriacetate metabolic process The chemical reactions and pathways involving nitrilotriacetate, the aminotricarboxylic acid N(CH2COO-)3, that occur in the presence of oxygen. tmpzr1t_l9r_go_relaxed.owl aerobic nitrilotriacetate metabolism biological_process owl:Class GO:0005598 biolink:NamedThing short-chain collagen trimer Any collagen trimer that does not form fibrils and that is relatively short compared to the collagen trimers that do form fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050417 biolink:NamedThing glutamin-(asparagin-)ase activity Catalysis of the reaction: H2O + L-glutamine = NH3 + L-glutamate; and H2O + L-asparagine = NH3 + L-aspartate. tmpzr1t_l9r_go_relaxed.owl L-ASNase/L-GLNase activity|glutaminase-asparaginase activity|glutaminase-(asparagin-)ase activity|L-asparagine/L-glutamine amidohydrolase activity|L-glutamine(L-asparagine) amidohydrolase activity MetaCyc:GLUTAMINASE-ASPARAGIN-ASE-RXN|EC:3.5.1.38 molecular_function owl:Class GO:0103030 biolink:NamedThing ethylglyoxal reductase (NADH-dependent, hydroxyacetone-forming) activity Catalysis of the reaction: H+ + methylglyoxal + NADH = hydroxyacetone + NAD. tmpzr1t_l9r_go_relaxed.owl RHEA:35615|MetaCyc:RXN0-5213 molecular_function owl:Class GO:1904368 biolink:NamedThing regulation of sclerenchyma cell differentiation Any process that modulates the frequency, rate or extent of sclerenchyma cell differentiation. tmpzr1t_l9r_go_relaxed.owl tb 2015-06-17T19:53:00Z biological_process owl:Class GO:0050148 biolink:NamedThing nucleotide diphosphokinase activity Catalysis of the reaction: ATP + nucleoside 5'-phosphate = AMP + 5'-phosphonucleoside 3'-diphosphate. tmpzr1t_l9r_go_relaxed.owl nucleotide pyrophosphokinase activity|ATP nucleotide 3'-pyrophosphokinase activity|nucleotide 3'-pyrophosphokinase activity|ATP:nucleotide pyrophosphotransferase activity|ATP:nucleoside-5'-phosphate diphosphotransferase activity RHEA:12713|EC:2.7.6.4|MetaCyc:NUCLEOTIDE-PYROPHOSPHOKINASE-RXN molecular_function owl:Class GO:1902489 biolink:NamedThing hepatoblast apoptotic process Any apoptotic process in a hepatoblast. tmpzr1t_l9r_go_relaxed.owl hepatoblast apoptosis cls 2013-11-12T17:02:52Z biological_process owl:Class GO:0120216 biolink:NamedThing matrilin complex A cartilage extracellular matrix complex that mediates interactions between major components of the extracellular matrix such as collagens and proteoglycans and contributes to their fibrillar network. Exists as an obligate homotrimer. tmpzr1t_l9r_go_relaxed.owl matrilin family complex|matrilin-3 complex|matrilin-2 complex|matrilin-1 complex|matrilin-4 complex krc 2019-07-09T22:05:11Z cellular_component owl:Class GO:0097388 biolink:NamedThing chemokine (C-C motif) ligand 19 production The appearance of chemokine (C-C motif) ligand 19 (CCL19) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl macrophage inflammatory protein-3-beta production|CCL19 production|MIP-3-beta production|EBI1 ligand chemokine production|ELC production pr 2012-10-23T07:54:10Z biological_process owl:Class GO:0050338 biolink:NamedThing thiosulfate dehydrogenase activity Catalysis of the reaction: 2 thiosulfate + 2 ferricytochrome c = tetrathionate + 2 ferrocytochrome c. tmpzr1t_l9r_go_relaxed.owl thiosulfate-acceptor oxidoreductase activity|tetrathionate synthase activity|thiosulphate dehydrogenase activity|thiosulfate-oxidizing enzyme|thiosulfate:ferricytochrome-c oxidoreductase activity|thiosulfate oxidase activity RHEA:20549|EC:1.8.2.2|MetaCyc:THIOSULFATE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0090591 biolink:NamedThing protein-N(PI)-phosphohistidine-N-acetyl-mannosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetyl-mannosamine(out) = protein histidine +N-acetyl- mannosamine-6-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:33:01Z molecular_function owl:Class GO:0102298 biolink:NamedThing selenocystathione synthase activity Catalysis of the reaction: L-selenocysteine + O-phosphonato-L-homoserine = hydrogenphosphate + L-selenocystathionine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12728 molecular_function owl:Class GO:0036058 biolink:NamedThing filtration diaphragm assembly The aggregation, arrangement and bonding together of a set of components to form a filtration diaphragm, a specialized cell-cell junction found between the cells of the excretory system, which provides a barrier for filtration of blood or hemolymph. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T04:38:40Z biological_process owl:Class GO:0019973 biolink:NamedThing interleukin-13 binding Binding to interleukin-13. tmpzr1t_l9r_go_relaxed.owl IL-13 binding molecular_function owl:Class GO:0140365 biolink:NamedThing RNP body A ribonucleoprotein granule located in the cytoplasm of bacteria, minimally containing the RNase E protein and RNA molecules. Bacterial RNP-bodies are similar to eukaryotic P-bodies and stress granules. tmpzr1t_l9r_go_relaxed.owl BR-body pg 2019-07-25T19:31:17Z cellular_component owl:Class GO:0044181 biolink:NamedThing filamentous growth of a multicellular organism The process in which a multicellular organism grows in a threadlike, filamentous shape. tmpzr1t_l9r_go_relaxed.owl jl 2009-09-25T10:17:58Z biological_process owl:Class GO:0032168 biolink:NamedThing hyphal septin ring A tight ring-shaped structure that forms in the division plane within hyphae of filamentous fungi at sites where a septum will form; composed of septins as well as septin-associated proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090588 biolink:NamedThing protein-phosphocysteine-N-acetylmuramate phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + N-acetylmuramate (out) = protein cysteine + N-acetylmuramate-6-phosphate (in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0090548 biolink:NamedThing response to nitrate starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nitrate. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-22T13:57:16Z biological_process owl:Class GO:0035782 biolink:NamedThing mature natural killer cell chemotaxis The directed movement of a mature natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). A mature natural killer cell is a natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class and other stress related molecules. tmpzr1t_l9r_go_relaxed.owl activated natural killer cell chemotaxis bf 2011-04-04T11:23:13Z biological_process owl:Class GO:0090160 biolink:NamedThing Golgi to lysosome transport The directed movement of substances from the Golgi to lysosomes. tmpzr1t_l9r_go_relaxed.owl tb 2009-12-08T08:35:13Z biological_process owl:Class GO:1990756 biolink:NamedThing ubiquitin ligase-substrate adaptor activity The binding activity of a molecule that brings together a ubiquitin ligase and its substrate. Usually mediated by F-box BTB/POZ domain proteins. tmpzr1t_l9r_go_relaxed.owl protein binding, bridging involved in substrate recognition for ubiquitination|ubiquitin ligase substrate adaptor https://github.com/geneontology/go-ontology/issues/18655 vw 2015-06-01T08:35:16Z molecular_function owl:Class GO:0061479 biolink:NamedThing response to reverse transcriptase inhibitor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reverse transcriptase inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:10:51Z biological_process owl:Class GO:0003951 biolink:NamedThing NAD+ kinase activity Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+). tmpzr1t_l9r_go_relaxed.owl NADK|ATP:NAD+ 2'-phosphotransferase activity|NAD kinase activity|nicotinamide adenine dinucleotide kinase (phosphorylating)|nicotinamide adenine dinucleotide kinase activity|DPN kinase activity MetaCyc:NAD-KIN-RXN|KEGG_REACTION:R00104|Reactome:R-HSA-197198|RHEA:18629|EC:2.7.1.23|Reactome:R-HSA-8955030 molecular_function owl:Class GO:0102291 biolink:NamedThing 11alpha-hydroxy-beta-amyrin dehydrogenase activity Catalysis of the reaction: 11alpha-hydroxy-beta-amyrin + O2 + NADPH + H+ = 11-oxo-beta-amyrin + 2 H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12682|EC:1.14.14.152|RHEA:31719 molecular_function owl:Class GO:0047684 biolink:NamedThing arylamine glucosyltransferase activity Catalysis of the reaction: UDP-glucose + an arylamine = UDP + an N-D-glucosylarylamine. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:arylamine N-D-glucosyltransferase activity|UDP glucose-arylamine glucosyltransferase activity|uridine diphosphoglucose-arylamine glucosyltransferase activity|UDPglucose:arylamine N-D-glucosyltransferase activity MetaCyc:ARYLAMINE-GLUCOSYLTRANSFERASE-RXN|EC:2.4.1.71 molecular_function owl:Class GO:0008825 biolink:NamedThing cyclopropane-fatty-acyl-phospholipid synthase activity Catalysis of the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. tmpzr1t_l9r_go_relaxed.owl CFA synthase activity|cyclopropane fatty acid synthase activity|cyclopropane synthetase activity|cyclopropane synthase activity|unsaturated-phospholipid methyltransferase activity|cyclopropane fatty acid synthetase activity|S-adenosyl-L-methionine:unsaturated-phospholipid methyltransferase (cyclizing) MetaCyc:2.1.1.79-RXN|RHEA:11988|EC:2.1.1.79 molecular_function owl:Class GO:0072444 biolink:NamedThing response to mitotic DNA replication checkpoint signaling A process that occurs in response to signals generated as a result of mitotic DNA replication checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to S-M checkpoint signaling|response to signal involved in mitotic DNA replication checkpoint|S-M checkpoint effector process|response to signal involved in S-M checkpoint|mitotic DNA replication checkpoint effector process mah 2010-12-08T05:13:27Z GO:0072447 biological_process owl:Class GO:0002230 biolink:NamedThing positive regulation of defense response to virus by host Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication. tmpzr1t_l9r_go_relaxed.owl activation of antiviral response by host|up-regulation of antiviral response by host|up regulation of antiviral response by host|positive regulation of antiviral response by host|upregulation of antiviral response by host|stimulation of antiviral response by host biological_process owl:Class GO:0033566 biolink:NamedThing gamma-tubulin complex localization Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl gamma-tubulin complex localisation|establishment and maintenance of gamma-tubulin complex localization biological_process owl:Class GO:0036352 biolink:NamedThing histone H2A-K15 ubiquitination The modification of histone H2A by addition of ubiquitin group at lysine 15 (H2A-K15) in metazoans, and at the equivalent residue in other organisms. Monoubiquitin is first attached to H2A-K15 and K63-linked ubiquitin chains are then extended from this monoubiquitin. tmpzr1t_l9r_go_relaxed.owl histone H2A ubiquitination (H2A-K15) bf 2012-09-19T11:49:03Z biological_process owl:Class GO:0004163 biolink:NamedThing diphosphomevalonate decarboxylase activity Catalysis of the reaction: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + H(+) + isopentenyl diphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl pyrophosphomevalonate decarboxylase activity|pyrophosphomevalonic acid decarboxylase activity|ATP:(R)-5-diphosphomevalonate carboxy-lyase (adding ATP; isopentenyl-diphosphate-forming)|mevalonate-5-pyrophosphate decarboxylase activity|ATP:(R)-5-diphosphomevalonate carboxy-lyase (dehydrating)|5-pyrophosphomevalonate decarboxylase activity|mevalonate diphosphate decarboxylase activity|mevalonate 5-diphosphate decarboxylase activity|mevalonate pyrophosphate decarboxylase activity MetaCyc:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN|RHEA:23732|EC:4.1.1.33|Reactome:R-HSA-191414|KEGG_REACTION:R01121 molecular_function owl:Class GO:0071000 biolink:NamedThing response to magnetism Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus. tmpzr1t_l9r_go_relaxed.owl response to magnetic stimulus mah 2009-11-04T12:02:03Z biological_process owl:Class GO:0097660 biolink:NamedThing SCF-Cdc4 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Cdc4 in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:23:13Z cellular_component owl:Class GO:0103040 biolink:NamedThing aldose sugar dehydrogenase activity Catalysis of the reaction: H2O + an aldose + an oxidized electron acceptor = H+ + an aldonate + a reduced electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6371 molecular_function owl:Class GO:0005917 biolink:NamedThing nephrocyte diaphragm A specialized cell-cell junction found between nephrocytes of the insect kidney, which is adapted for filtration of hemolymph. The insect nephrocyte is anatomically and functionally similar to the glomerular podocyte of vertebrates. tmpzr1t_l9r_go_relaxed.owl nephrocyte junction cellular_component owl:Class GO:1990755 biolink:NamedThing mitotic spindle microtubule depolymerization The removal of tubulin heterodimers from one or both ends of a microtubule that is part of the mitotic spindle. tmpzr1t_l9r_go_relaxed.owl mitotic spindle microtubule depolymerisation mah 2015-05-28T15:42:06Z biological_process owl:Class GO:0047045 biolink:NamedThing testosterone 17-beta-dehydrogenase (NADP+) activity Catalysis of the reaction: NADP+ + testosterone = NADPH + H+ + androst-4-ene-3,17-dione. tmpzr1t_l9r_go_relaxed.owl NADP-dependent testosterone-17beta-oxidoreductase activity|17-ketoreductase activity|17beta-hydroxysteroid:NADP+ 17-oxidoreductase activity|testosterone 17beta-dehydrogenase (NADP+) RHEA:14981|Wikipedia:Testosterone_17beta-dehydrogenase_(NADP+)|EC:1.1.1.64|KEGG_REACTION:R01838|MetaCyc:1.1.1.64-RXN molecular_function owl:Class GO:0034860 biolink:NamedThing 2-mercaptobenzothiazole desulfurase activity Catalysis of the reaction: 2-mercaptobenzothiazole + reduced acceptor = benzothiazole + hydrogen sulfide + oxidized acceptor. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1288|EC:4.4.1.- molecular_function owl:Class GO:0031759 biolink:NamedThing Edg-6 sphingosine 1-phosphate receptor binding Binding to an Edg-6 sphingosine 1-phosphate receptor. tmpzr1t_l9r_go_relaxed.owl Edg-6 sphingosine 1-phosphate receptor ligand molecular_function owl:Class GO:0019010 biolink:NamedThing farnesoic acid O-methyltransferase activity Catalysis of the reaction: farnesoic acid + S-adenosyl-methionine = methyl farnesoate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-methionine:farnesoic acid O-methyltransferase activity molecular_function owl:Class GO:0090672 biolink:NamedThing telomerase RNA localization Any process in which telomerase RNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl tb 2015-12-17T14:08:01Z biological_process owl:Class GO:0018529 biolink:NamedThing nitrilotriacetate monooxygenase activity Catalysis of the reaction: nitrilotriacetate + NADH + H+ + O2 = NAD+ + H2O + glyoxylate + iminodiacetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0587|EC:1.14.14.10 molecular_function owl:Class GO:0102443 biolink:NamedThing L-2-hydroxycarboxylate dehydrogenase (NAD+) activity Catalysis of the reaction: NAD(1-) + a (2S)-2-hydroxycarboxylate <=> NADH(2-) + H+ + a 2-oxo carboxylate. tmpzr1t_l9r_go_relaxed.owl RHEA:34555|MetaCyc:RXN-13927|EC:1.1.1.337 molecular_function owl:Class GO:0061768 biolink:NamedThing magnesium:sodium antiporter activity Catalysis of the reaction: Na+(in) + Mg2+(out) = Na+(out) + Mg2+(in). tmpzr1t_l9r_go_relaxed.owl dph 2016-05-04T14:45:45Z molecular_function owl:Class GO:0070121 biolink:NamedThing Kupffer's vesicle development The progression of the Kupffer's vesicle over time from its initial formation until its mature state. The Kupffer's vesicle is a small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. tmpzr1t_l9r_go_relaxed.owl KV development biological_process owl:Class GO:0052338 biolink:NamedThing disruption by host of symbiont cell wall The chemical reactions and pathways performed by an organism resulting in the breakdown of the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism of symbiont cell wall by organism|degradation of symbiont cell wall by organism|disassembly by host of symbiont cell wall biological_process owl:Class GO:0052336 biolink:NamedThing modification by host of symbiont cell wall The process in which an organism effects a change in the structure or function of the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism of symbiont cell wall by organism biological_process owl:Class GO:1904068 biolink:NamedThing G protein-coupled receptor signaling pathway involved in social behavior Any G protein-coupled receptor signaling pathway that is involved in social behavior. tmpzr1t_l9r_go_relaxed.owl G protein coupled receptor protein signalling pathway involved in social behavior|GPCR signalling pathway involved in cooperative behavior|G protein coupled receptor protein signaling pathway involved in cooperative behavior|G-protein-coupled receptor protein signaling pathway involved in social behaviour|G protein coupled receptor protein signalling pathway involved in social behaviour|G protein coupled receptor protein signaling pathway involved in social behavior|G-protein coupled receptor signaling pathway involved in social behaviour|G-protein coupled receptor signaling pathway involved in social behavior|G-protein-coupled receptor protein signalling pathway involved in social behavior|G-protein-coupled receptor protein signaling pathway involved in cooperative behavior|G-protein coupled receptor signalling pathway involved in social behavior|G-protein coupled receptor protein signaling pathway involved in social behaviour|G-protein coupled receptor signalling pathway involved in cooperative behavior|GPCR signaling pathway involved in cooperative behavior|G protein coupled receptor protein signaling pathway involved in social behaviour|G-protein coupled receptor protein signaling pathway involved in cooperative behavior|G-protein-coupled receptor protein signalling pathway involved in social behaviour|G protein coupled receptor protein signalling pathway involved in cooperative behavior|G-protein coupled receptor protein signal transduction involved in cooperative behavior|G-protein coupled receptor signalling pathway involved in social behaviour|GPCR signaling pathway involved in social behaviour|GPCR signalling pathway involved in social behaviour|GPCR signalling pathway involved in social behavior|G-protein coupled receptor protein signal transduction involved in social behavior|G-protein coupled receptor protein signaling pathway involved in social behavior|G-protein coupled receptor protein signal transduction involved in social behaviour|G-protein coupled receptor signaling pathway involved in cooperative behavior|GPCR signaling pathway involved in social behavior|G-protein-coupled receptor protein signalling pathway involved in cooperative behavior|G-protein-coupled receptor protein signaling pathway involved in social behavior kmv 2015-03-20T01:51:10Z biological_process owl:Class GO:0010924 biolink:NamedThing regulation of inositol-polyphosphate 5-phosphatase activity Any process that modulates the rate or frequency of inositol-polyphosphate 5-phosphatase activity, the catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030379 biolink:NamedThing neurotensin receptor activity, non-G protein-coupled Combining with neurotensin, a neuropeptide active in the central and peripheral nervous system in mammals, and transmitting the signal from one side of the membrane to the other by a mechanism independent of coupling to G proteins. tmpzr1t_l9r_go_relaxed.owl non-G-protein coupled neurotensin receptor activity|non-G-protein-coupled neurotensin receptor activity|neurotensin receptor activity, non-G-protein coupled|neurotensin receptor activity, non G protein coupled|non G protein coupled neurotensin receptor activity molecular_function owl:Class GO:0035796 biolink:NamedThing ATP-binding cassette (ABC) transporter complex, transmembrane substrate-binding subunit-containing A complex for the transport of metabolites into the cell, consisting of 4 subunits: a transmembrane substrate-binding protein (known as the S component), and an energy-coupling module that comprises two ATP-binding proteins (known as the A and A' components) and a transmembrane protein (known as the T component). Transport of the substrate across the membrane is driven by the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl energy coupling factor (ECF)-type ABC transporter|energy-coupling factor transporter|ATP-binding cassette (ABC) transporter complex, ECF-type The ECF-type transporters differs from other types of ABC transporters because the substrate-binding subunit lies integral to the membrane. bf 2011-04-11T02:02:41Z cellular_component owl:Class GO:0019452 biolink:NamedThing L-cysteine catabolic process to taurine The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including taurine. tmpzr1t_l9r_go_relaxed.owl L-cysteine breakdown to taurine|L-cysteine degradation to taurine biological_process owl:Class GO:0070915 biolink:NamedThing lysophosphatidic acid receptor activity Combining with the phospholipid derivative lysophosphatidic acid, and transmitting the signal across the membrane by activating an associated G-protein. tmpzr1t_l9r_go_relaxed.owl LPA receptor activity mah 2009-09-10T05:05:13Z molecular_function owl:Class GO:0036437 biolink:NamedThing Isw1b complex An Isw1 complex that binds DNA and has nucleosome-stimulated ATPase activity. In S. cerevisiae, contains an Isw1p ATPase subunit in complex with Ioc2p and Ioc4p. tmpzr1t_l9r_go_relaxed.owl bf 2013-09-18T16:53:07Z cellular_component owl:Class GO:0031466 biolink:NamedThing Cul5-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul5 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein. tmpzr1t_l9r_go_relaxed.owl cullin-RING ligase 5|SCF5 complex|CRL5 complex|CDL5 complex|EC2S complex cellular_component owl:Class GO:0035273 biolink:NamedThing phthalate binding Binding to a phthalate, any ester or salt of phthalic acid. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050600 biolink:NamedThing myristoyl-CoA 11-(E) desaturase activity Catalysis of the reaction: myristoyl-CoA + NAD(P)H + H+ + O2 = (E)-11-tetradecenoyl-CoA + NAD(P)+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl n-tetradecanoyl-CoA,NAD(P)H:O2 oxidoreductase [11-(E) desaturating]|n-tetradecanoyl-CoA,NADPH:O2 oxidoreductase [11-(E) desaturating] EC:1.14.19.24|RHEA:46396|MetaCyc:1.14.99.31-RXN molecular_function owl:Class GO:0034792 biolink:NamedThing hypophosphite dioxygenase activity Catalysis of the reaction: hypophosphite + 2-oxoglutarate + O2 = succinate + phosphite + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1058 molecular_function owl:Class GO:0002327 biolink:NamedThing immature B cell differentiation The process in which a precursor cell type acquires the specialized features of an immature B cell. tmpzr1t_l9r_go_relaxed.owl immature B lymphocyte differentiation|immature B cell development|immature B-cell differentiation|immature B-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0002766 biolink:NamedThing innate immune response-inhibiting signal transduction The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately leading to inhibition of an innate immune response. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1902981 biolink:NamedThing synthesis of RNA primer involved in mitotic DNA replication Any synthesis of RNA primer involved in mitotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl synthesis of RNA primer involved in mitotic cell cycle DNA replication jl 2014-05-06T19:20:00Z GO:1903458 biological_process owl:Class GO:0047317 biolink:NamedThing N6-acetyl-beta-lysine transaminase activity Catalysis of the reaction: 2-oxoglutarate + 3-amino-6-acetamidohexanoate = L-glutamate + 3-oxo-6-acetamidohexanoate. tmpzr1t_l9r_go_relaxed.owl epsilon-acetyl-beta-lysine aminotransferase activity|6-acetamido-3-aminohexanoate:2-oxoglutarate aminotransferase activity|N6-acetyl-beta-lysine aminotransferase activity|N(6)-acetyl-beta-lysine aminotransferase activity MetaCyc:2.6.1.65-RXN|EC:2.6.1.65|RHEA:16889 molecular_function owl:Class GO:0090669 biolink:NamedThing telomerase RNA stabilization Prevention of degradation of telomerase RNA (TERC) molecules. tmpzr1t_l9r_go_relaxed.owl TERC stabilization tb 2015-12-17T14:01:11Z biological_process owl:Class GO:0006962 biolink:NamedThing male-specific antibacterial humoral response An immune response against bacteria, specific to males and mediated through a body fluid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097260 biolink:NamedThing eoxin A4 synthase activity Catalysis of the reaction: leukotriene A4 = eoxin A4. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2162019 pr 2012-03-08T02:57:23Z molecular_function owl:Class GO:0097707 biolink:NamedThing ferroptosis A programmed cell death characterized morphologically by the presence of smaller than normal mitochondria with condensed mitochondrial membrane densities, reduction or vanishing of mitochondria crista, and outer mitochondrial membrane rupture. Activation of mitochondrial voltage-dependent anion channels and mitogen-activated protein kinases, upregulation of endoplasmic reticulum stress, and inhibition of cystine/glutamate antiporter are involved in the induction of ferroptosis. This process is characterized by the accumulation of lipid peroxidation products and lethal reactive oxygen species (ROS) derived from iron metabolism. Glutathione peroxidase 4 (GPX4), heat shock protein beta-1, and nuclear factor erythroid 2-related factor 2 function as negative regulators of ferroptosis by limiting ROS production and reducing cellular iron uptake, respectively. In contrast, NADPH oxidase and p53 act as positive regulators of ferroptosis by promotion of ROS production and inhibition of expression of SLC7A11 (a specific light-chain subunit of the cystine/glutamate antiporter), respectively. Misregulated ferroptosis has been implicated in multiple physiological and pathological processes. tmpzr1t_l9r_go_relaxed.owl iron-dependent programmed cell death pr 2016-03-03T12:51:18Z biological_process owl:Class GO:0061824 biolink:NamedThing cytosolic ciliogenesis The process in which an axoneme is exposed entirely or partially to the cytoplasm or by which the cytoplasmic portion is assembled or extended. Cytosolic ciliogenesis can occur following compartmentalized ciliogenesis, in which the cilium is formed within a compartment separated from the cytoplasm. tmpzr1t_l9r_go_relaxed.owl intracellular ciliogenesis dph 2017-01-14T14:24:17Z biological_process owl:Class GO:0038134 biolink:NamedThing ERBB2-EGFR signaling pathway A series of molecular signals initiated by binding of a ligand to an epidermal growth factor receptor (EGFR/ERBB1) on the surface of a cell, followed by transmission of the signal by a heterodimeric complex of ERBB2 and EGFR. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as EGFR. tmpzr1t_l9r_go_relaxed.owl EGFR-HER2 signaling pathway|ERBB2-EGFR signalling pathway bf 2012-03-30T11:16:28Z biological_process owl:Class GO:0004427 biolink:NamedThing inorganic diphosphatase activity Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl inorganic pyrophosphatase activity|pyrophosphate phosphohydrolase activity|diphosphate phosphohydrolase activity Reactome:R-HSA-71732|Reactome:R-HSA-449937|RHEA:24576|MetaCyc:INORGPYROPHOSPHAT-RXN|KEGG_REACTION:R00004|EC:3.6.1.1|Reactome:R-HSA-6788912 molecular_function owl:Class GO:0044538 biolink:NamedThing host cell periphery The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures of a host cell. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-21T03:26:33Z cellular_component owl:Class GO:0071120 biolink:NamedThing alpha4-beta1 integrin-CD47 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell surface antigen CD47. tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB1-CB47 complex mah 2009-11-13T02:21:10Z cellular_component owl:Class GO:0061327 biolink:NamedThing anterior Malpighian tubule development The process whose specific outcome is the progression of the anterior Malpighian tubule over time, from its formation to the mature structure. The pair of anterior tubules arise from a dorsal region of the embryonic hindgut and projects forwards through the body cavity. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which connects with the posterior part of the gut. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T01:23:18Z biological_process owl:Class GO:0034904 biolink:NamedThing 5-chloro-2-oxopent-4-enoate hydratase activity Catalysis of the reaction: 5-chloro-2-oxopent-4-enoate + H2O = 5-chloro-4-hydroxy-2-oxopentanate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1436 molecular_function owl:Class GO:0051485 biolink:NamedThing terpenoid biosynthetic process, mevalonate-dependent The chemical reactions and pathways resulting in the formation of terpenoids via isopentenyl diphosphate, synthesized by the mevalonate pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in terpenoid biosynthesis, and in mevalonate-dependent terpenoid biosynthesis, acetate, in the form of acetyl-CoA, is converted to isopentenyl diphosphate (IPP) through a series of mevalonate intermediates. tmpzr1t_l9r_go_relaxed.owl terpene biosynthesis, mevalonate-dependent|terpene biosynthetic process, mevalonate-dependent|terpenoid anabolism, mevalonate-dependent|terpenoid formation, mevalonate-dependent|terpenoid synthesis, mevalonate-dependent biological_process owl:Class GO:0047590 biolink:NamedThing 5-dehydro-2-deoxygluconokinase activity Catalysis of the reaction: ATP + 5-dehydro-2-deoxy-D-gluconate = ADP + 6-phospho-5-dehydro-2-deoxy-D-gluconate. tmpzr1t_l9r_go_relaxed.owl 5-keto-2-deoxyglucono kinase (phosphorylating)|ATP:5-dehydro-2-deoxy-D-gluconate 6-phosphotransferase activity|DKH kinase activity|5-keto-2-deoxygluconokinase activity MetaCyc:5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN|EC:2.7.1.92|RHEA:13497 molecular_function owl:Class GO:0070973 biolink:NamedThing protein localization to endoplasmic reticulum exit site A process in which a protein is transported to, or maintained in, a location at an endoplasmic reticulum exit site. tmpzr1t_l9r_go_relaxed.owl protein localisation to endoplasmic reticulum exit site|protein localization to ER exit site mah 2009-10-02T12:45:41Z biological_process owl:Class GO:0032500 biolink:NamedThing muramyl dipeptide binding Interacting selectively and non-covalently, in a non-covalent manner, with muramyl dipeptide; muramyl dipeptide is derived from peptidoglycan. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106299 biolink:NamedThing resolution phase response An active host response phase of acute inflammation driven by specialized pro-resolving mediators (SPMs) and signaling pathways, enabling timely tissue regeneration and return of function. tmpzr1t_l9r_go_relaxed.owl Acute inflammatory response(s) are self-limited, resolve on their own and classically divide into initiation and resolution phases. SPMs are a superfamily of proresolving mediators that include resolvins (Rvs), protectins (PDs), maresins (MaRs) and lipoxins (LXs). hjd 2020-08-25T13:54:05Z biological_process owl:Class GO:0004737 biolink:NamedThing pyruvate decarboxylase activity Catalysis of the reaction: a 2-oxo acid = an aldehyde + CO2. tmpzr1t_l9r_go_relaxed.owl pyruvic decarboxylase activity|2-oxo-acid carboxy-lyase (aldehyde-forming)|alpha-ketoacid carboxylase activity|alpha-carboxylase activity|2-oxo-acid carboxy-lyase activity EC:4.1.1.1|MetaCyc:PYRUVATE-DECARBOXYLASE-RXN|RHEA:11628 molecular_function owl:Class GO:0033978 biolink:NamedThing phosphonopyruvate hydrolase activity Catalysis of the reaction: 3-phosphonopyruvate + H(2)O = phosphate + pyruvate. tmpzr1t_l9r_go_relaxed.owl PPH EC:3.11.1.3|RHEA:16673|MetaCyc:3.11.1.3-RXN|KEGG_REACTION:R08200 molecular_function owl:Class GO:0045052 biolink:NamedThing protein insertion into ER membrane by GPI attachment sequence A process of protein insertion into the endoplasmic reticulum (ER) membrane in which proteins become anchored to the phospholipid bilayer by a covalently attached glycosylphosphatidylinositol (GPI) molecule. tmpzr1t_l9r_go_relaxed.owl protein-ER insertion by GPI attachment sequence|protein insertion into ER membrane, GPI attachment sequence mediated|protein insertion into endoplasmic reticulum membrane by GPI attachment sequence|GPI attachment sequence mediated protein insertion into ER membrane|protein-endoplasmic reticulum insertion by GPI attachment sequence biological_process owl:Class GO:1903350 biolink:NamedThing response to dopamine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dopamine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-08-19T19:33:26Z biological_process owl:Class GO:0098817 biolink:NamedThing evoked excitatory postsynaptic potential A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell induced by the evoked release of many vesicles of excitatory neurotransmitter at the synapse. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004415 biolink:NamedThing hyalurononglucosaminidase activity Catalysis of the random hydrolysis of (1->4) linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate. tmpzr1t_l9r_go_relaxed.owl hyaluronidase activity|hyaluronate 4-glycanohydrolase activity|hyaluronoglucosaminidase activity|chondroitinase activity|hyaluronoglucosidase activity|chondroitinase I activity Reactome:R-HSA-2160874|Reactome:R-HSA-5693356|MetaCyc:3.2.1.35-RXN|Reactome:R-HSA-9036077|Reactome:R-HSA-1793209|Reactome:R-HSA-2318585|Reactome:R-HSA-2160892|EC:3.2.1.35 molecular_function owl:Class GO:0048254 biolink:NamedThing snoRNA localization Any process in which small nucleolar RNA is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl small nucleolar RNA localization|establishment and maintenance of snoRNA localization|snoRNA localisation biological_process owl:Class GO:0005166 biolink:NamedThing neurotrophin p75 receptor binding Binding to a neurotrophin p75 receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin p75 receptor ligand molecular_function owl:Class GO:1905389 biolink:NamedThing response to leukotriene B4 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukotriene B4 stimulus. tmpzr1t_l9r_go_relaxed.owl response to LTB4 sl 2016-08-18T16:37:24Z biological_process owl:Class GO:0004677 biolink:NamedThing DNA-dependent protein kinase activity DNA dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl This reaction requires the presence of DNA. molecular_function owl:Class GO:0043383 biolink:NamedThing negative T cell selection The process of elimination of immature T cells which react strongly with self-antigens. tmpzr1t_l9r_go_relaxed.owl negative T lymphocyte selection|negative T-lymphocyte selection|negative T-cell selection biological_process owl:Class GO:0098582 biolink:NamedThing innate vocalization behavior A vocalisation behavior that is innate, i.e. that does not need to be learned in order to occur. tmpzr1t_l9r_go_relaxed.owl dos 2014-01-24T12:47:01Z biological_process owl:Class GO:1902314 biolink:NamedThing hydroquinone binding Binding to hydroquinone. tmpzr1t_l9r_go_relaxed.owl quinol binding bhm 2013-07-22T10:10:12Z molecular_function owl:Class GO:0030321 biolink:NamedThing transepithelial chloride transport The directed movement of chloride ions from one side of an epithelium to the other. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048658 biolink:NamedThing anther wall tapetum development The process whose specific outcome is the progression of the anther wall tapetum over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tapetal layer development|tapetum development biological_process owl:Class GO:0071332 biolink:NamedThing cellular response to fructose stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T05:37:39Z biological_process owl:Class GO:1990050 biolink:NamedThing phosphatidic acid transfer activity Removes a phosphatidic acid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. Phosphatidic acid refers to a glycophospholipids with, in general, a saturated fatty acid bonded to carbon-1, an unsaturated fatty acid bonded to carbon-2, and a phosphate group bonded to carbon-3. tmpzr1t_l9r_go_relaxed.owl phosphatidic acid carrier activity|phosphatidic acid transporter activity|intermembrane PA transfer activity|intermembrane phosphatidic acid transfer activity rb 2013-02-21T00:45:28Z molecular_function owl:Class GO:0110001 biolink:NamedThing toxin-antitoxin complex A bacterial protein complex that neutralises its own toxin by complexing the toxin with the antitoxin. The antitoxin can be either a protein or an RNA. The neutralising toxin-antitoxin complex also acts as a transcriptional repressor of the toxin-antitoxin operon. tmpzr1t_l9r_go_relaxed.owl An example is YoeB (P69348) in Escherichia coli in PMID:16109374 (inferred by direct evidence). kmv cellular_component owl:Class GO:0047662 biolink:NamedThing aminobenzoate decarboxylase activity Catalysis of the reaction: 4(or 2)-aminobenzoate = aniline + CO2. tmpzr1t_l9r_go_relaxed.owl aminobenzoate carboxy-lyase (aniline-forming)|aminobenzoate carboxy-lyase activity EC:4.1.1.24|MetaCyc:AMINOBENZOATE-DECARBOXYLASE-RXN|RHEA:24200 molecular_function owl:Class GO:0009837 biolink:NamedThing fruit ripening, non-climacteric A fruit ripening process that does not involve a respiratory burst. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047550 biolink:NamedThing 2-oxoadipate reductase activity Catalysis of the reaction: 2-hydroxyadipate + NAD(+) = 2-oxoadipate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2-ketoadipate reductase activity|2-hydroxyadipate:NAD+ 2-oxidoreductase activity|alpha-ketoadipate reductase activity RHEA:14793|EC:1.1.1.172|MetaCyc:2-OXOADIPATE-REDUCTASE-RXN|KEGG_REACTION:R01932 molecular_function owl:Class GO:0099190 biolink:NamedThing postsynaptic spectrin-associated cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of spectrin-associated cytoskeleton and associated proteins in the postsynapse. tmpzr1t_l9r_go_relaxed.owl dos 2017-12-20T15:34:26Z biological_process owl:Class GO:0003385 biolink:NamedThing cell-cell signaling involved in amphid sensory organ development Any process that mediates the transfer of information from one cell to another and contributes to the progression of an amphid sensory organ over time, from its formation to the mature state. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in amphid sensory organ development dph 2009-12-09T08:55:37Z biological_process owl:Class GO:0030752 biolink:NamedThing 5-hydroxyfuranocoumarin 5-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 5-hydroxyfuranocoumarin = S-adenosyl-L-homocysteine + 5-methoxyfuranocoumarin. tmpzr1t_l9r_go_relaxed.owl BMT activity|furanocoumarin 5-O-methyltransferase activity|bergaptol 5-O-methyltransferase activity|S-adenosyl-L-methionine:5-hydroxyfuranocoumarin 5-O-methyltransferase activity|bergaptol methyltransferase activity|bergaptol O-methyltransferase activity|furanocoumarin 5-methyltransferase activity|S-adenosyl-L-methionine:5-hydroxyfurocoumarin 5-O-methyltransferase activity|S-adenosyl-L-methionine:bergaptol O-methyltransferase activity|S-adenosyl-L-methionine:bergaptolO-methyltransferase activity EC:2.1.1.69|RHEA:11808|MetaCyc:2.1.1.69-RXN GO:0030764 molecular_function owl:Class GO:0031778 biolink:NamedThing type 2 melanin-concentrating hormone receptor binding Binding to a type 2 melanin-concentrating hormone receptor. tmpzr1t_l9r_go_relaxed.owl type 2 melanin-concentrating hormone receptor ligand molecular_function owl:Class GO:0071477 biolink:NamedThing cellular hypotonic salinity response Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl cellular response to hypotonic salt stress mah 2009-12-18T11:53:20Z biological_process owl:Class GO:0102029 biolink:NamedThing D-lactate dehydrogenase (quinone) activity Catalysis of the reaction: (R)-lactate + an ubiquinone = pyruvate + an ubiquinol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:DLACTDEHYDROGFAD-RXN|RHEA:51468|EC:1.1.5.12 molecular_function owl:Class GO:0047244 biolink:NamedThing N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase activity Catalysis of the reaction: N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP-N-acetyl-D-mannosamine = N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetyl-mannosamineacetylglucosaminylpyrophosphorylundecaprenol acetylmannosaminyltransferase activity|UDP-N-acetylmannosamine:N-acetylglucosaminyl diphosphorylundecaprenol N-acetylmannosaminyltransferase activity|UDP-N-acetyl-D-mannosamine:N-acetyl-beta-D-glucosaminyldiphosphoundecaprenol beta-1,4-N-acetylmannosaminyltransferase activity|N-acetylmannosaminyltransferase activity EC:2.4.1.187|RHEA:16053|MetaCyc:TEICHOICSYN2-RXN molecular_function owl:Class GO:0004736 biolink:NamedThing pyruvate carboxylase activity Catalysis of the reaction: ATP + bicarbonate + pyruvate = ADP + 2 H(+) + oxaloacetate + phosphate. tmpzr1t_l9r_go_relaxed.owl pyruvic carboxylase activity|pyruvate:carbon-dioxide ligase (ADP-forming) EC:6.4.1.1|MetaCyc:PYRUVATE-CARBOXYLASE-RXN|Reactome:R-HSA-70501|RHEA:20844|KEGG_REACTION:R00344 molecular_function owl:Class GO:0080097 biolink:NamedThing L-tryptophan:pyruvate aminotransferase activity Catalysis of the reaction: L-tryptophan + pyruvate = 3-(indol-3-yl)pyruvate + L-alanine. tmpzr1t_l9r_go_relaxed.owl RHEA:27586|MetaCyc:RXN-10139|EC:2.6.1.99 This reaction falls within the larger set of reactions associated with EC:2.6.1.28 (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.28; note: 3-indole-2-oxopropanoate = indolepyruvate = 3-(indol-3-yl)pyruvate). dhl 2009-04-23T03:45:23Z molecular_function owl:Class GO:0097497 biolink:NamedThing blood vessel endothelial cell delamination The process of negative regulation of cell adhesion that results in blood vessel endothelial cells splitting off from an existing endothelial sheet. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-12T13:48:34Z biological_process owl:Class GO:1901558 biolink:NamedThing response to metformin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metformin stimulus. tmpzr1t_l9r_go_relaxed.owl hp 2012-11-02T09:46:24Z biological_process owl:Class GO:0140480 biolink:NamedThing mitotic spindle pole body insertion into the nuclear envelope A process in which the duplicated mitotic spindle pole body is inserted into a fenestra which opens in the nuclear envelope in early mitosis, and is subsequently tethered to the membrane. tmpzr1t_l9r_go_relaxed.owl establishment of spindle pole body localization to nuclear envelope|establishment of spindle pole body localisation in nuclear envelope|establishment of spindle pole body localization in nuclear envelope https://github.com/geneontology/go-ontology/issues/14887 pg 2020-06-25T14:45:40Z biological_process owl:Class GO:0071734 biolink:NamedThing biotin-[pyruvate-carboxylase] ligase activity Catalysis of the reaction: ATP + biotin + apo-(pyruvate-carboxylase) = AMP + diphosphate + biotin-(pyruvate-carboxylase). tmpzr1t_l9r_go_relaxed.owl biotin-pyruvate carboxylase synthetase activity|biotin-[pyruvate carboxylase] ligase activity|biotin-pyruvate-carboxylase ligase activity|biotin-[pyruvate carboxylase] synthetase activity|biotin:apo-pyruvate-carboxylase ligase EC:6.3.4.- mah 2010-03-19T02:37:24Z molecular_function owl:Class GO:0035880 biolink:NamedThing embryonic nail plate morphogenesis The process, occurring in the embryo, by which the anatomical structures of a nail plate are generated and organized. The nail plate is the hard and translucent portion of the nail, composed of keratin, and serves to protect the tips of digits. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-31T02:38:57Z biological_process owl:Class GO:0072204 biolink:NamedThing cell-cell signaling involved in metanephros development Any process that mediates the transfer of information from one cell to another and contributes to the progression of the metanephros over time, from its formation to the mature organ. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in metanephros development mah 2010-03-18T10:54:36Z biological_process owl:Class GO:0030386 biolink:NamedThing ferredoxin-thioredoxin reductase complex A protein complex that possesses ferredoxin-thioredoxin reductase activity. tmpzr1t_l9r_go_relaxed.owl ferredoxin:thioredoxin reductase complex Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'ferredoxin-thioredoxin reductase activity ; GO:0103012'. cellular_component owl:Class GO:0047918 biolink:NamedThing GDP-mannose 3,5-epimerase activity Catalysis of the reaction: GDP-mannose = GDP-L-galactose. tmpzr1t_l9r_go_relaxed.owl GDP-D-mannose:GDP-L-galactose epimerase activity|GDPmannose 3,5-epimerase activity|guanosine 5'-diphosphate D-mannose:guanosine 5'-diphosphate L-galactose epimerase activity RHEA:11144|EC:5.1.3.18|MetaCyc:RXN-1882 molecular_function owl:Class GO:0033992 biolink:NamedThing 1,5-anhydro-D-fructose dehydratase activity Catalysis of the reaction: 1,5-anhydro-D-fructose = 1,5-anhydro-4-deoxy-D-glycero-hex-3-en-2-ulose + H2O. tmpzr1t_l9r_go_relaxed.owl AF dehydratase activity|1,5-anhydro-D-arabino-hex-2-ulose dehydratase activity|1,5-anhydro-D-fructose 4-dehydratase activity|1,5-anhydro-D-fructose hydro-lyase (ascopyrone-M-forming) activity|1,5-anhydro-D-fructose hydro-lyase activity|AFDH|1,5-anhydro-D-fructose hydrolyase activity EC:4.2.1.111|MetaCyc:4.2.1.111-RXN|RHEA:15725 molecular_function owl:Class GO:0102939 biolink:NamedThing 3-methoxy-5-hydroxytoluene O-methyltransferase activity Catalysis of the reaction: 3-methoxy-5-hydroxytoluene + S-adenosyl-L-methionine = H+ + 3,5-dimethoxytoluene + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9018 molecular_function owl:Class GO:0005706 biolink:NamedThing polytene chromosome ectopic fiber A thread-like connection joining two regions of ectopically paired polytene chromosomes. tmpzr1t_l9r_go_relaxed.owl polytene chromosome ectopic fibre cellular_component owl:Class GO:0106351 biolink:NamedThing aspartate dehydrogenase NAD activity Catalysis of the reaction: L-aspartate + H2O + NAD+ = oxaloacetate + NH3 + NADH+ H+. tmpzr1t_l9r_go_relaxed.owl RHEA:11788 hjd 2021-01-20T17:39:50Z molecular_function owl:Class GO:0038103 biolink:NamedThing activin receptor antagonist activity involved in negative regulation of nodal signaling pathway Interacting with an activin receptor to reduce the action of the agonist nodal. A receptor antagonist does not initiate signaling upon binding to a receptor, but instead blocks an agonist from binding to the receptor. tmpzr1t_l9r_go_relaxed.owl nodal antagonist activity|activin receptor antagonist activity involved in negative regulation of nodal signalling pathway bf 2012-02-17T11:30:21Z molecular_function owl:Class GO:0046994 biolink:NamedThing oxidoreductase activity, acting on hydrogen as donor, with a quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.12.5.- molecular_function owl:Class GO:0090492 biolink:NamedThing N,N-Dihydroxy-L-tryptophan decarboxylase activity Catalyzes the reaction: N,N-Dihydroxy-L-tryptophan = Indole-3-acetaldehyde oxime + CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-16T16:32:30Z molecular_function owl:Class GO:0047305 biolink:NamedThing (R)-3-amino-2-methylpropionate-pyruvate transaminase activity Catalysis of the reaction: (2R)-3-amino-2-methylpropanoate + pyruvate = 2-methyl-3-oxopropanoate + L-alanine. tmpzr1t_l9r_go_relaxed.owl (R)-3-amino-2-methylpropanoate:pyruvate aminotransferase activity|beta-aminoisobutyrate-pyruvate aminotransferase activity|(R)-3-amino-2-methylpropionate--pyruvate aminotransferase activity|(R)-3-amino-2-methylpropanoate transaminase activity|(R)-3-amino-2-methylpropionate transaminase activity|beta-aminoisobutyrate--pyruvate transaminase activity|D-beta-aminoisobutyrate:pyruvate aminotransferase activity|(R)-3-amino-2-methylpropanoate aminotransferase activity|D-3-aminoisobutyrate-pyruvate transaminase activity|D-3-aminoisobutyrate--pyruvate aminotransferase activity|(R)-3-amino-2-methylpropionate-pyruvate aminotransferase activity|D-3-aminoisobutyrate--pyruvate transaminase activity|D-AIBAT activity Reactome:R-HSA-909780|EC:2.6.1.40|KEGG_REACTION:R02050|RHEA:18393|MetaCyc:2.6.1.40-RXN Note that this function was EC:2.6.1.61. GO:0047314 molecular_function owl:Class GO:0102414 biolink:NamedThing quercetin-3-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: quercetin-3-glucoside + UDP-alpha-D-glucose(2-) <=> quercetin-3-gentiobioside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13797 molecular_function owl:Class GO:0002136 biolink:NamedThing tRNA wobble base lysidine biosynthesis The process in which the carbonyl of cytosine at position 34 of a tRNA is post-transcriptionally replaced by lysine. tmpzr1t_l9r_go_relaxed.owl Exclusively located at the anticodon wobble position (i.e., position 34) of eubacterial and some organellar tRNAIle2. This modification converts the codon specificity from AUG to AUA, and it also converts the aminoacylation specificity of the tRNA from methionine to isoleucine. Requires ATP. biological_process owl:Class GO:0070541 biolink:NamedThing response to platinum ion Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platinum stimulus. tmpzr1t_l9r_go_relaxed.owl response to platinum biological_process owl:Class GO:0045772 biolink:NamedThing positive regulation of autophagosome size Any process that increases autophagosome size. tmpzr1t_l9r_go_relaxed.owl up regulation of autophagic vacuole size|upregulation of autophagic vacuole size|up-regulation of autophagic vacuole size|stimulation of autophagic vacuole size|positive regulation of autophagic vacuole size|activation of autophagic vacuole size biological_process owl:Class GO:0052869 biolink:NamedThing arachidonic acid omega-hydroxylase activity Catalysis of the reaction: arachidonic acid + O2 + NADPH + H+ = 20-HETE + NADP+ + H2O. Arachidonic acid is also known as (5Z,8Z,11Z,14Z)-icosatetraenoic acid, and 20-HETE is also known as (5Z,8Z,11Z,14Z)-20-hydroxyicosa-5,8,11,14-tetraenoic acid. tmpzr1t_l9r_go_relaxed.owl arachidonic acid hydroxylase activity|arachidonic acid:oxygen 1-oxidoreductase activity KEGG_REACTION:R07041|EC:1.14.15.3 ai 2012-01-30T03:05:27Z molecular_function owl:Class GO:0060273 biolink:NamedThing crying behavior The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102750 biolink:NamedThing tetrahydrogeranylgeranyl-chlorophyll a reductase activity Catalysis of the reaction: chlorophyll a + NADP = tetrahydrogeranylgeranyl-chlorophyll a + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7666 molecular_function owl:Class GO:0052887 biolink:NamedThing 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity Catalysis of the reaction: 7,9,9'-tri-cis-neurosporene + a quinone = 7,9,7',9'-tetra-cis-lycopene + a quinol. tmpzr1t_l9r_go_relaxed.owl ZDS activity|zeta-carotene desaturase activity|9,9'-di-cis-zeta-carotene desaturase activity MetaCyc:RXN-11357|EC:1.3.5.6|KEGG_REACTION:R09658 molecular_function owl:Class GO:0008738 biolink:NamedThing L-fuculose-phosphate aldolase activity Catalysis of the reaction: L-fuculose 1-phosphate = (S)-lactaldehyde + glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl L-fuculose-1-phosphate S-lactaldehyde-lyase (glycerone-phosphate-forming)|L-fuculose 1-phosphate aldolase activity|fuculose aldolase activity|L-fuculose-1-phosphate lactaldehyde-lyase activity EC:4.1.2.17|RHEA:12933|KEGG_REACTION:R02262|MetaCyc:FUCPALDOL-RXN molecular_function owl:Class GO:1990016 biolink:NamedThing neck portion of tanycyte Elongated portion of a tanycyte that sticks into the periventricular layer of neuropil where it appears to contact a blood vessel; characterized by numerous cytoplasmic extensions. A tanycyte is a specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS. tmpzr1t_l9r_go_relaxed.owl neck portion NIF_Subcellular:sao901230115 pr 2012-12-19T15:17:17Z cellular_component owl:Class GO:0045148 biolink:NamedThing tripeptide aminopeptidase activity Catalysis of the hydrolysis of a single N-terminal amino acid residue from a tripeptide. tmpzr1t_l9r_go_relaxed.owl lymphopeptidase activity|peptidase T|alanine-phenylalanine-proline arylamidase activity|imidoendopeptidase activity|aminotripeptidase activity|peptidase B|aminoexotripeptidase activity https://github.com/geneontology/go-ontology/issues/19681 EC:3.4.11.4|MetaCyc:3.4.11.4-RXN molecular_function owl:Class GO:0071043 biolink:NamedThing CUT metabolic process The chemical reactions and pathways involving cryptic unstable transcripts (CUTs), which are transcribed from intergenic regions. Many intergenic regions are heavily transcribed, but the transcripts are rarely detected due to rapid degradation by the nuclear exosome. tmpzr1t_l9r_go_relaxed.owl krc 2009-07-29T02:31:31Z biological_process owl:Class GO:0019415 biolink:NamedThing acetate biosynthetic process from carbon monoxide The chemical reactions and pathways resulting in the formation of acetate from other compounds, including carbon monoxide. tmpzr1t_l9r_go_relaxed.owl acetate anabolism from carbon monoxide|carbon monoxide dehydrogenase pathway|acetate synthesis from carbon monoxide|acetate formation from carbon monoxide biological_process owl:Class GO:0047814 biolink:NamedThing D-arabinokinase activity Catalysis of the reaction: D-arabinose + ATP = D-arabinose 5-phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl ATP:D-arabinose 5-phosphotransferase activity|D-arabinokinase (phosphorylating) EC:2.7.1.54|KEGG_REACTION:R01573|MetaCyc:D-ARABINOKINASE-RXN|RHEA:24588 molecular_function owl:Class GO:0019281 biolink:NamedThing L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-succinyl-L-homoserine and cystathionine. tmpzr1t_l9r_go_relaxed.owl methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|L-methionine anabolism from homoserine via O-succinyl-L-homoserine and cystathionine|L-methionine formation from homoserine via O-succinyl-L-homoserine and cystathionine|L-methionine synthesis from homoserine via O-succinyl-L-homoserine and cystathionine MetaCyc:MET-SAM-PWY biological_process owl:Class GO:0048836 biolink:NamedThing specification of increased petal number Any process that increases the number of petals produced in a developing flower. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102175 biolink:NamedThing 3-beta-hydroxysteroid dehydrogenase/C4-decarboxylase activity Catalysis of the reaction: a 3beta-hydroxysteroid-4alpha-carboxylate + NAD(+) = a 3-oxosteroid + CO2 + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11928|RHEA:34775 molecular_function owl:Class GO:0097494 biolink:NamedThing regulation of vesicle size Any process that modulates the size of a vesicle. tmpzr1t_l9r_go_relaxed.owl pr 2013-08-06T11:48:51Z biological_process owl:Class GO:0006242 biolink:NamedThing dCTP biosynthetic process The chemical reactions and pathways resulting in the formation of dCTP, deoxycytidine triphosphate. tmpzr1t_l9r_go_relaxed.owl dCTP anabolism|dCTP formation|dCTP synthesis|dCTP biosynthesis biological_process owl:Class GO:1902191 biolink:NamedThing 2-methylbutanoyl-CoA(4-) biosynthetic process The chemical reactions and pathways resulting in the formation of 2-methylbutanoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 2-methylbutanoyl-CoA(4-) anabolism|2-methylbutanoyl-CoA(4-) biosynthesis|2-methylbutanoyl-CoA(4-) synthesis|2-methylbutanoyl-CoA(4-) formation ms 2013-06-06T09:40:25Z biological_process owl:Class GO:0075284 biolink:NamedThing asexual sporulation resulting in formation of a multicellular or syncytial spore The formation of a multicellular or syncytial spore via septations derived from mitosis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044197 biolink:NamedThing Rel homology domain binding Binding to a Rel Homology Domain (RHD) of a protein. The RHD is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish and NFAT. tmpzr1t_l9r_go_relaxed.owl RHD binding jl 2009-10-20T03:57:48Z molecular_function owl:Class GO:0018511 biolink:NamedThing 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase activity Catalysis of the reaction: cis-2,3-dihydroxy-2,3-dihydro-p-cumate + NAD(+) = 2,3-dihydroxy-p-cumate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl cis-2,3-dihydroxy-2,3-dihydro-p-cumate:NAD+ oxidoreductase activity UM-BBD_reactionID:r0396|MetaCyc:RXN-665|RHEA:23772|EC:1.3.1.58|KEGG_REACTION:R05240 molecular_function owl:Class GO:0099129 biolink:NamedThing cochlear outer hair cell electromotile response A rapid, force generating length change of an outer hair cell in response to electical stimulation. This occurs naturally as during hearing where it serves a source of mechanical amplification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106009 biolink:NamedThing (4S)-4-hydroxy-2-oxoglutarate aldolase activity Catalysis of the reaction:(4S)-4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate. tmpzr1t_l9r_go_relaxed.owl RHEA:35639|EC:4.1.3.42 hjd 2017-04-25T14:14:58Z molecular_function owl:Class GO:0047964 biolink:NamedThing glyoxylate reductase (NAD+) activity Catalysis of the reaction: glycolate + NAD+ = glyoxylate + NADH. tmpzr1t_l9r_go_relaxed.owl glyoxylic acid reductase activity|glycolate reductase activity|NADH-dependent glyoxylate reductase activity MetaCyc:GLYCOLATE-REDUCTASE-RXN|RHEA:18229|EC:1.1.1.26 molecular_function owl:Class GO:0052022 biolink:NamedThing modulation by symbiont of jasmonic acid levels in host The alteration by an organism of the levels of jasmonic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of jasmonic acid levels in other organism involved in symbiotic interaction GO:0052456 biological_process owl:Class GO:0018788 biolink:NamedThing atrazine chlorohydrolase activity Catalysis of the reaction: atrazine + H(2)O = 4-(ethylamino)-2-hydroxy-6-(isopropylamino)-1,3,5-triazine + chloride + H(+). tmpzr1t_l9r_go_relaxed.owl AtzA KEGG_REACTION:R05558|MetaCyc:3.8.1.8-RXN|EC:3.8.1.8|RHEA:11312|UM-BBD_reactionID:r0113 molecular_function owl:Class GO:0019315 biolink:NamedThing D-allose biosynthetic process The chemical reactions and pathways resulting in the formation of D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose. tmpzr1t_l9r_go_relaxed.owl D-allose formation|D-allose synthesis|D-allose biosynthesis|D-allose anabolism biological_process owl:Class GO:0018448 biolink:NamedThing hydroxymethylmethylsilanediol oxidase activity Catalysis of the reaction: hydroxymethylmethylsilanediol + O2 + 2 H+ + 2 e- = formylmethylsilanediol + 2 H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0638 molecular_function owl:Class GO:0002211 biolink:NamedThing behavioral defense response to insect A behavioral response seeking to protect an organism from an a perceived external threat from an insect or insects to that organism. tmpzr1t_l9r_go_relaxed.owl behavioural defense response to insect biological_process owl:Class GO:0071112 biolink:NamedThing alpha4-beta4 integrin-EMILIN-1 complex A protein complex that consists of an alpha4-beta4 integrin complex bound to EMILIN-1 (ElastinMicrofibril Interface Located ProteIN). tmpzr1t_l9r_go_relaxed.owl ITGA4-ITGB4-EMILIN1 complex mah 2009-11-13T02:17:11Z cellular_component owl:Class GO:0047190 biolink:NamedThing 2-acylglycerophosphocholine O-acyltransferase activity Catalysis of the reaction: 2-acyl-sn-glycero-3-phosphocholine + acyl-CoA = 1,2-diacyl-sn-glycero-3-phosphocholine + CoA. tmpzr1t_l9r_go_relaxed.owl 2-acylglycerophosphocholine acyltransferase activity|2-acylglycerol-3-phosphorylcholine acyltransferase activity|acyl-CoA:2-acyl-sn-glycero-3-phosphocholine O-acyltransferase activity KEGG_REACTION:R01319|EC:2.3.1.62|MetaCyc:2.3.1.62-RXN|RHEA:10332 molecular_function owl:Class GO:1990910 biolink:NamedThing response to hypobaric hypoxia Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension combined with low atmospheric pressure. Hypoxia is defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95% and hypobaric is defined as atmospheric pressure below 0.74 atm (greater than 2,500 m above sea level). tmpzr1t_l9r_go_relaxed.owl sl 2015-12-07T19:34:14Z biological_process owl:Class GO:0101030 biolink:NamedThing tRNA-guanine transglycosylation The modification of a tRNA anticodon loop by replacing guanine with queuonine. Reaction is tRNA guanine + queuine = tRNA queuine + guanine. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019517 biolink:NamedThing L-threonine catabolic process to D-lactate The chemical reactions and pathways resulting in the breakdown of L- threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form the compound methylglyoxal, which is subsequently converted to D-lactate. tmpzr1t_l9r_go_relaxed.owl L-threonine catabolic process to pyruvate|L-threonine catabolic process to (R)-lactate|L-threonine catabolism to D-lactate|L-threonine degradation to D-lactate|L-threonine catabolic process to methylglyoxal|L-threonine breakdown to D-lactate|threonine catabolic process to D-lactate MetaCyc:THRDLCTCAT-PWY biological_process owl:Class GO:0047566 biolink:NamedThing 3-ketovalidoxylamine C-N-lyase activity Catalysis of the reaction: 4-nitrophenyl-3-ketovalidamine = 4-nitroaniline + 5-D-(5/6)-5-C-(hydroxymethyl)-2,6-dihydroxycyclohex-2-en-1-one + H(+). tmpzr1t_l9r_go_relaxed.owl 4-nitrophenyl-3-ketovalidamine 4-nitroaniline-lyase activity|4-nitrophenyl-3-ketovalidamine 4-nitroaniline-lyase [5-D-(5/6)-5-C-(hydroxymethyl)-2,6-dihydroxycyclohex-2-en-1-one-forming]|3-ketovalidoxylamine A C-N-lyase activity|p-nitrophenyl-3-ketovalidamine p-nitroaniline lyase activity EC:4.3.3.1|RHEA:22768|MetaCyc:3-KETOVALIDOXYLAMINE-C-N-LYASE-RXN|KEGG_REACTION:R04367 molecular_function owl:Class GO:0015361 biolink:NamedThing low-affinity sodium:dicarboxylate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. tmpzr1t_l9r_go_relaxed.owl low affinity sodium:dicarboxylate cotransporter activity|low affinity sodium:dicarboxylate symporter activity Reactome:R-HSA-433131 molecular_function owl:Class GO:0015648 biolink:NamedThing lipid-linked peptidoglycan transporter activity Enables the directed movement of lipid-linked peptidoglycans into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl lipid-linked murein transporter activity molecular_function owl:Class GO:0009974 biolink:NamedThing zeinoxanthin epsilon hydroxylase activity Catalysis of the reaction: zeinoxanthin + NADPH + O2 + H+ = lutein + NADP+ + H2O. Adds a hydroxyl group to the epsilon ring of the alpha-carotene. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.158|RHEA:57352|MetaCyc:RXN-5962 molecular_function owl:Class GO:0018480 biolink:NamedThing 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity Catalysis of the reaction: 5-carboxymethyl-2-hydroxymuconate semialdehyde + H2O + NAD+ = 5-carboxymethyl-2-hydroxymuconate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl carboxymethylhydroxymuconic semialdehyde dehydrogenase activity|5-carboxymethyl-2-hydroxymuconic-semialdehyde:NAD+ oxidoreductase activity MetaCyc:CHMS-DEHYDROGENASE-RXN|UM-BBD_reactionID:r0365|RHEA:15681|EC:1.2.1.60 molecular_function owl:Class GO:0031143 biolink:NamedThing pseudopodium A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding. tmpzr1t_l9r_go_relaxed.owl reticulopodium|axopodium|lobopodium|pseudopod|pseudopodial protrusion https://github.com/geneontology/go-ontology/issues/21141|https://github.com/geneontology/go-ontology/issues/21139 Wikipedia:Pseudopod cellular_component owl:Class GO:0009752 biolink:NamedThing detection of salicylic acid stimulus The series of events in which a salicylic acid stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of salicylic acid stimulus biological_process owl:Class GO:0043744 biolink:NamedThing N2-acetyl-L-aminoadipate kinase activity Catalysis of the reaction: ATP + N-acetyl-L-2-aminoadipate = ADP + N-acetyl-L-2-aminoadipate 6-phosphate. tmpzr1t_l9r_go_relaxed.owl acetylaminoadipate kinase activity|N-acetylaminoadipate kinase activity|N-acetyl-L-aminoadipate 5-phosphotransferase activity|[LysW]-aminoadipate kinase MetaCyc:RXN-5182|RHEA:41944 GO:0043868 molecular_function owl:Class GO:0102102 biolink:NamedThing homocarnosine synthase activity Catalysis of the reaction: gamma-aminobutyric acid + L-histidine + ATP = H+ + homocarnosine + ADP + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl EC:6.3.2.11|RHEA:59568|MetaCyc:RXN-11222 molecular_function owl:Class GO:0039627 biolink:NamedThing T=147 icosahedral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=147 symmetry. T=147 icosahedral capsid is composed of 12 pentameric and 1460 hexameric capsomeres for a total of 8820 capsid proteins. tmpzr1t_l9r_go_relaxed.owl bf 2012-08-03T16:18:49Z cellular_component owl:Class GO:0031464 biolink:NamedThing Cul4A-RING E3 ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul4A subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an adaptor protein. tmpzr1t_l9r_go_relaxed.owl SCF4 complex|CDL4 complex|DCX complex|CRL4 complex|VDC complex|cullin-RING ligase 4A cellular_component owl:Class GO:0080008 biolink:NamedThing Cul4-RING E3 ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul4 family and a RING domain protein form the catalytic core; substrate specificity is conferred by an adaptor protein. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102406 biolink:NamedThing omega-hydroxypalmitate O-sinapoyl transferase activity Catalysis of the reaction: sinapoyl-CoA + 16-hydroxypalmitate <=> coenzyme A + 16-sinapoyloxypalmitate. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.188|MetaCyc:RXN-13728|RHEA:26470 molecular_function owl:Class GO:0047092 biolink:NamedThing 27-hydroxycholesterol 7-alpha-monooxygenase activity Catalysis of the reaction: O2 + NADPH + 27-hydroxycholesterol = H2O + NADP+ + 7-alpha,27-dihydroxycholesterol. tmpzr1t_l9r_go_relaxed.owl 27-hydroxycholesterol 7a-hydroxylase activity|27-hydroxycholesterol 7alpha-hydroxylase activity|27-hydroxycholesterol,NADPH:oxygen oxidoreductase (7alpha-hydroxylating)|27-hydroxycholesterol 7alpha-monooxygenase activity|27-hydroxycholesterol 7-alpha-hydroxylase activity EC:1.14.14.29|MetaCyc:1.14.13.60-RXN|RHEA:24308 molecular_function owl:Class GO:0018585 biolink:NamedThing fluorene oxygenase activity Catalysis of the reaction: fluorene + 2 H+ + 2 e- + O2 = H2O + 9-fluorenol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0407 molecular_function owl:Class GO:0010751 biolink:NamedThing negative regulation of nitric oxide mediated signal transduction Any process that decreases the rate, frequency or extent of nitric oxide mediated signal transduction. Nitric oxide mediated signal transduction is a series of molecular signals mediated by the detection of nitric oxide (NO). tmpzr1t_l9r_go_relaxed.owl negative regulation of nitric oxide-mediated signal transduction biological_process owl:Class GO:0050975 biolink:NamedThing sensory perception of touch The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). tmpzr1t_l9r_go_relaxed.owl tactile sense|tactition|taction|perception of touch Wikipedia:Touch biological_process owl:Class GO:0060427 biolink:NamedThing lung connective tissue development The biological process whose specific outcome is the progression of lung connective tissue from an initial condition to its mature state. This process begins with the formation of lung connective tissue and ends with the mature structure. The lung connective tissue is a material made up of fibers forming a framework and support structure for the lungs. tmpzr1t_l9r_go_relaxed.owl pulmonary connective tissue development biological_process owl:Class GO:0052640 biolink:NamedThing salicylic acid glucosyltransferase (glucoside-forming) activity Catalysis of the reaction: salicylic acid + UDP-glucose = salicylic acid 2-O-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl UDP:glucose:SA glucosyltransferase (glucoside-forming) activity|salicylic acid glucosyltransferase activity|UDP:glucose:salicylate glucosyltransferase (glucoside-forming) activity|UDP:glucose:2-hydroxybenzoic acid glucosyltransferase (glucoside-forming) activity|UDP:glucose:salicylic acid glucosyltransferase (glucoside-forming) activity RHEA:62312|MetaCyc:RXN-11658 molecular_function owl:Class GO:0103107 biolink:NamedThing castasterone 23-O-glucosyltransferase activity Catalysis of the reaction: castasterone + UDP-alpha-D-glucose <=> castasterone-23-O-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4398 molecular_function owl:Class GO:1905602 biolink:NamedThing positive regulation of receptor-mediated endocytosis involved in cholesterol transport Any process that activates or increases the frequency, rate or extent of receptor-mediated endocytosis involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl upregulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|upregulation of receptor-mediated endocytosis of LDL|upregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|activation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|up regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|up regulation of receptor-mediated endocytosis of LDL|up regulation of receptor-mediated endocytosis involved in cholesterol transport|positive regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|positive regulation of receptor-mediated endocytosis of LDL|positive regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|upregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|upregulation of receptor-mediated endocytosis involved in cholesterol transport|up-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|activation of receptor-mediated endocytosis involved in intracellular cholesterol transport|positive regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|up regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|activation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|up-regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|up-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|up regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport|up-regulation of receptor-mediated endocytosis of LDL|up-regulation of receptor-mediated endocytosis involved in cholesterol transport|activation of receptor-mediated endocytosis involved in cholesterol transport|activation of receptor-mediated endocytosis of LDL pr 2016-10-26T13:01:59Z biological_process owl:Class GO:0050619 biolink:NamedThing phytochromobilin:ferredoxin oxidoreductase activity Catalysis of the reaction: (3Z)-phytochromobilin + oxidized ferredoxin = biliverdin IXa + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl HY2|(3Z)-phytochromobilin:ferredoxin oxidoreductase activity|phytochromobilin synthase activity|PPhiB synthase activity|P-Phi-B synthase activity|PFB synthase activity RHEA:16377|EC:1.3.7.4|MetaCyc:1.3.7.4-RXN molecular_function owl:Class GO:1902178 biolink:NamedThing fibroblast growth factor receptor apoptotic signaling pathway An apoptotic signaling pathway that starts with a ligand binding to, or being withdrawn from, a fibroblast growth factor receptor (FGFR). tmpzr1t_l9r_go_relaxed.owl FGF receptor signalling pathway involved in type I programmed cell death|FGFR signaling pathway involved in programmed cell death by apoptosis|FGFR signaling pathway involved in apoptotic cell death|FGFR signaling pathway involved in apoptotic process|fibroblast growth factor receptor signalling pathway involved in apoptotic process|FGF receptor signalling pathway involved in apoptotic program|FGFR signaling pathway involved in apoptotic program|FGF receptor signaling pathway involved in programmed cell death by apoptosis|fibroblast growth factor receptor signalling pathway involved in apoptotic cell death|fibroblast growth factor receptor signalling pathway involved in apoptotic program|fibroblast growth factor receptor signaling pathway involved in apoptosis|FGFR signaling pathway involved in apoptosis|fibroblast growth factor receptor signaling pathway involved in apoptotic process|FGF receptor signaling pathway involved in type I programmed cell death|FGF receptor signaling pathway involved in apoptotic process|fibroblast growth factor receptor signaling pathway involved in type I programmed cell death|fibroblast growth factor receptor signaling pathway involved in apoptotic programmed cell death|FGF receptor signalling pathway involved in apoptotic programmed cell death|fibroblast growth factor receptor signalling pathway involved in signaling (initiator) caspase activity|FGF receptor signalling pathway involved in programmed cell death by apoptosis|fibroblast growth factor receptor signalling pathway involved in type I programmed cell death|FGF receptor signalling pathway involved in apoptotic process|FGF receptor signaling pathway involved in apoptotic program|fibroblast growth factor receptor signaling pathway involved in apoptotic cell death|fibroblast growth factor receptor signaling pathway involved in signaling (initiator) caspase activity|FGF receptor signalling pathway involved in apoptosis|fibroblast growth factor receptor signalling pathway involved in apoptotic programmed cell death|FGFR signaling pathway involved in type I programmed cell death|FGF receptor signaling pathway involved in apoptosis|FGF receptor signaling pathway involved in signaling (initiator) caspase activity|FGF receptor signaling pathway involved in apoptotic cell death|FGFR signaling pathway involved in signaling (initiator) caspase activity|fibroblast growth factor receptor signaling pathway involved in apoptotic program|fibroblast growth factor receptor signaling pathway involved in programmed cell death by apoptosis|fibroblast growth factor receptor signalling pathway involved in programmed cell death by apoptosis|FGF receptor signalling pathway involved in signaling (initiator) caspase activity|FGF receptor signaling pathway involved in apoptotic programmed cell death|fibroblast growth factor receptor signalling pathway involved in apoptosis|FGFR signaling pathway involved in apoptotic programmed cell death|FGF receptor signalling pathway involved in apoptotic cell death pm 2013-05-30T13:59:57Z biological_process owl:Class GO:0016731 biolink:NamedThing oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.18.1.- molecular_function owl:Class GO:1990483 biolink:NamedThing Clr6 histone deacetylase complex I'' A histone deacetylase complex involved in chromatin organization. In Schizosaccharomyces pombe this complex consists of Clr6, Nts1, Mug165, and Png3. tmpzr1t_l9r_go_relaxed.owl al 2014-09-16T10:40:51Z cellular_component owl:Class GO:0018499 biolink:NamedThing cis-2,3-dihydrodiol DDT dehydrogenase activity Catalysis of the reaction: cis-2,3-dihydrodiol DDT + NADP+ = NADPH + 2,3-dihydroxy DDT. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0451 molecular_function owl:Class GO:0031832 biolink:NamedThing type 6 serotonin receptor binding Binding to a type 6 serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 6 serotonin receptor ligand|5-hydroxytryptamine 6 receptor binding molecular_function owl:Class GO:0030892 biolink:NamedThing mitotic cohesin complex A cohesin complex that mediates sister chromatid cohesion during mitosis; has a subunit composition distinct from that of the meiotic cohesin complex. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050134 biolink:NamedThing N6-methyl-lysine oxidase activity Catalysis of the reaction: N(6)-methyl-L-lysine + H(2)O + O(2) = L-lysine + formaldehyde + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl N6-methyllysine oxidase activity|epsilon-alkyllysinase activity|6-N-methyl-L-lysine:oxygen oxidoreductase (demethylating)|epsilon-N-methyllysine demethylase activity|N(6)-methyllysine oxidase activity|N6-methyl-L-lysine:oxygen oxidoreductase (demethylating)|epsilon-alkyl-L-lysine:oxygen oxidoreductase activity KEGG_REACTION:R00612|MetaCyc:N6-METHYL-LYSINE-OXIDASE-RXN|RHEA:23200|EC:1.5.3.4 molecular_function owl:Class GO:0050353 biolink:NamedThing trimethyllysine dioxygenase activity Catalysis of the reaction: 2-oxoglutarate + N(6),N(6),N(6)-trimethyl-L-lysine + O(2) = 3-hydroxy-N(6),N(6),N(6)-trimethyl-L-lysine + CO(2) + succinate. tmpzr1t_l9r_go_relaxed.owl N6,N6,N6-trimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)|trimethyllysine alpha-ketoglutarate dioxygenase activity|TML hydroxylase activity|TMLD activity|TML-alpha-ketoglutarate dioxygenase activity|epsilon-trimethyllysine 2-oxoglutarate dioxygenase activity|6-N,6-N,6-N-trimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)|trimethyllysine,2-oxoglutarate dioxygenase activity|TML dioxygenase activity MetaCyc:TRIMETHYLLYSINE-DIOXYGENASE-RXN|EC:1.14.11.8|RHEA:14181|Reactome:R-HSA-71241|KEGG_REACTION:R03451 molecular_function owl:Class GO:0052749 biolink:NamedThing glucose-6-phosphate dehydrogenase (coenzyme F420) activity Catalysis of the reaction: beta-D-glucose 6-phosphate + coenzyme F420 + H+ = 6-O-phosphono-D-glucono-1,5-lactone + reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl F420-dependent glucose-6-phosphate dehydrogenase activity|D-glucose-6-phosphate:F420 1-oxidoreductase activity|coenzyme F420-dependent glucose-6-phosphate dehydrogenase activity MetaCyc:RXN-11283|KEGG_REACTION:R09550|RHEA:27294|EC:1.1.98.2 ai 2011-09-21T01:21:54Z molecular_function owl:Class GO:0061186 biolink:NamedThing negative regulation of silent mating-type cassette heterochromatin assembly Any process that decreases the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl negative regulation of chromatin silencing at silent mating-type cassette https://github.com/geneontology/go-ontology/issues/19112 dph 2010-07-14T08:59:11Z biological_process owl:Class GO:0034817 biolink:NamedThing cis-9,10-dihydroanthracene-9,10-diol dehydrogenase activity Catalysis of the reaction: cis-9,10-dihydroanthracene-9,10-diol = 9,10-anthraquinone + 4 H+ + 4 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1144 molecular_function owl:Class GO:0080167 biolink:NamedThing response to karrikin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T05:07:22Z biological_process owl:Class GO:0031217 biolink:NamedThing glucan 1,4-beta-glucosidase activity Catalysis of the hydrolysis of (1->4) linkages in (1->4)-beta-D-glucans, to remove successive glucose units. tmpzr1t_l9r_go_relaxed.owl beta-1,4-glucanase activity|beta-1,4-beta-glucanase activity|exo-beta-1,4-glucanase activity|exo-1,4-beta-D-glucosidase activity|exo-1,4-beta-glucanase activity|1,4-beta-D-glucan glucohydrolase activity|exocellulase activity|exo-1,4-beta-glucosidase activity|exo-beta-1,4-glucosidase activity EC:3.2.1.74|MetaCyc:3.2.1.74-RXN molecular_function owl:Class GO:0018411 biolink:NamedThing protein glucuronidation The modification of a protein by amino acid glucuronidation. tmpzr1t_l9r_go_relaxed.owl protein amino acid glucuronidation biological_process owl:Class GO:0050137 biolink:NamedThing NADPH peroxidase activity Catalysis of the reaction: H(2)O(2) + H(+) + NADPH = 2 H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl TPNH peroxidase activity|TPN peroxidase activity|NADPH:hydrogen-peroxide oxidoreductase activity|triphosphopyridine nucleotide peroxidase activity|nicotinamide adenine dinucleotide phosphate peroxidase activity|NADP peroxidase activity KEGG_REACTION:R00113|RHEA:15173|MetaCyc:NADPH-PEROXIDASE-RXN|EC:1.11.1.2 molecular_function owl:Class GO:0007119 biolink:NamedThing budding cell isotropic bud growth Unlocalized bud growth such that the entire surface of the bud expands evenly, in a cell that reproduces by budding. tmpzr1t_l9r_go_relaxed.owl isotropic bud growth biological_process owl:Class GO:0030715 biolink:NamedThing oocyte growth in germarium-derived egg chamber The increase in volume of an oocyte during the growth phase of the egg chamber, once the egg chamber has left the germarium. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071461 biolink:NamedThing cellular response to redox state Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. tmpzr1t_l9r_go_relaxed.owl cellular redox signal response mah 2009-12-18T11:30:21Z biological_process owl:Class GO:0036074 biolink:NamedThing metaplastic ossification Direct ossification in which bone formation occurs as result of the direct transformation of non-bone cells into bone cells without cell division. tmpzr1t_l9r_go_relaxed.owl metaplasia Some intramembranous ossification may also be classified as metaplastic; the former classifies based on tissue type location, and the latter based on mechanism/cell division. bf 2011-12-19T01:50:35Z biological_process owl:Class GO:0035124 biolink:NamedThing embryonic caudal fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the caudal fin are generated and organized. The caudal fin is an unpaired medial fin mounted at the caudal end of the fish and is the main fin used for propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051675 biolink:NamedThing isopullulanase activity Catalysis of the hydrolysis of pullulan to isopanose (6-alpha-maltosylglucose). tmpzr1t_l9r_go_relaxed.owl pullulan 4-glucanohydrolase (isopanose-forming) activity EC:3.2.1.57|MetaCyc:3.2.1.57-RXN molecular_function owl:Class GO:0039586 biolink:NamedThing modulation by virus of host PP1 activity The process in which a virus effects a change in host protein phosphatase-1 (PP1) activity, a serine/threonine phosphatase. Different viruses modulate host PP1 activity to remove phosphates from various cellular substrates and downregulate the host's antiviral response. tmpzr1t_l9r_go_relaxed.owl modulation of host PP1 activity by virus|regulation by virus of host PP1 activity VZ:803 bf 2012-05-04T02:11:05Z biological_process owl:Class GO:1902439 biolink:NamedThing cellular response to vanadate(3-) Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vanadate(3-) stimulus. tmpzr1t_l9r_go_relaxed.owl di 2013-10-10T10:50:30Z biological_process owl:Class GO:0061016 biolink:NamedThing snRNA localization to Cajal body The directed movement of snRNA, small nuclear ribonucleic acid, to a Cajal body. tmpzr1t_l9r_go_relaxed.owl dph 2010-01-29T02:40:50Z biological_process owl:Class GO:0030628 biolink:NamedThing pre-mRNA 3'-splice site binding Binding to a pre-mRNA 3' splice site sequence. tmpzr1t_l9r_go_relaxed.owl pre-mRNA 3' splice site binding molecular_function owl:Class GO:0097056 biolink:NamedThing selenocysteinyl-tRNA(Sec) biosynthetic process The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine. tmpzr1t_l9r_go_relaxed.owl selenocysteinyl-tRNA(Sec) biosynthesis|selenocysteinyl-tRNA(Sec) formation|selenocysteinyl-tRNA(Sec) anabolism|selenocysteinyl-tRNA(Sec) synthesis pr 2011-05-25T05:33:19Z biological_process owl:Class GO:1990864 biolink:NamedThing response to growth hormone-releasing hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth hormone-releasing hormone stimulus. Growth hormone-releasing hormone regulates the release of growth hormone, as well as some pancreatic proteins, and possibly other proteins. tmpzr1t_l9r_go_relaxed.owl response to somatorelin|response to growth hormone-releasing factor|response to GHRF|response to sermorelin|response to GRF|response to somatocrinin|response to somatoliberin sl 2015-09-25T14:45:31Z biological_process owl:Class GO:0070049 biolink:NamedThing endobrevin-SNAP-25-syntaxin-2 complex A SNARE complex that contains endobrevin (VAMP8), SNAP-25, and syntaxin 2 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Stx2-Snap25-Vamp8 complex|SNARE complex (Stx2, Snap25, Vamp8) cellular_component owl:Class GO:0018647 biolink:NamedThing phenanthrene 1,2-monooxygenase activity Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-1,2-oxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_enzymeID:e0333 molecular_function owl:Class GO:0140302 biolink:NamedThing pollen-style interaction The interactions (or cell to cell communication) that occur between the male gametophyte (pollen/pollen tube) and the stylar tissues of the female sporophyte. tmpzr1t_l9r_go_relaxed.owl pg 2019-02-22T13:59:33Z biological_process owl:Class GO:0034825 biolink:NamedThing tetralin ring-hydroxylating dioxygenase activity Catalysis of the reaction: tetralin + O2 + NADH + H+ = cis-1,2-dihydroxy-1,2,5,6,7,8-hexahydronaphthalene + NAD+. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r1169 molecular_function owl:Class GO:0098848 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase activity Catalysis of the reaction: alpha-D-ribose 1-methylphosphonate 5-phosphate = alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + methane. tmpzr1t_l9r_go_relaxed.owl alpha-D-ribose-1-methylphosphonate-5-phosphate C-P-lyase (methane forming) EC:4.7.1.1|RHEA:34707 molecular_function owl:Class GO:0018835 biolink:NamedThing carbon phosphorus lyase activity Catalysis of the reaction: alkylphosphonic acid = R-CH3 + phosphate. Substrates include aminomethylphosphonic acid (AMPA) (forms methylamine), dimethylphosphinic acid (forms methylphosphonic acid), glyphosate (forms sarcosine) and methylphosphonic acid (forms phosphate). tmpzr1t_l9r_go_relaxed.owl EC:4.7.1.- GO:0009456 molecular_function owl:Class GO:0036510 biolink:NamedThing trimming of terminal mannose on C branch The removal of an alpha-1,2-linked mannose from the C-chain of a glycoprotein oligosaccharide in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl conversion of (Man)9(GlcNAc)2 to (Man)8C(GlcNAc)2|conversion of M9 to M8C|glycoprotein mannose trimming on C branch Consider also annotating to 'mannosyl-oligosaccharide 1,2-alpha-mannosidase activity ; GO:0004571'. bf 2015-06-11T14:10:52Z biological_process owl:Class GO:0102473 biolink:NamedThing eriodictyol dibenzoylmethane tautomer 8C-glucosyltransferase activity Catalysis of the reaction: eriodictyol dibenzoylmethane tautomer + UDP-alpha-D-glucose <=> 8C-beta-D-glucosyl-2-hydroxyeriodictyol + UDP(3-) + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14079 molecular_function owl:Class GO:0140483 biolink:NamedThing kinetochore adaptor activity The binding activity of a protein that brings the kinetochore and another molecule into contact, permitting those molecules to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl outer kinetochore adaptor activity|inner kinetochore adaptor activity https://github.com/geneontology/go-ontology/issues/21091|https://github.com/geneontology/go-ontology/issues/19701 pg 2020-06-29T08:53:10Z molecular_function owl:Class GO:0102149 biolink:NamedThing farnesylcysteine lyase activity Catalysis of the reaction: S-[(2E,6E)-farnesyl]-L-cysteine + O2 + H2O <=> (2-trans,6-trans)-farnesal + L-cysteine + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl RHEA:30231|EC:1.8.3.6|MetaCyc:RXN-11623 molecular_function owl:Class GO:0060095 biolink:NamedThing zinc potentiation of synaptic transmission, glycinergic Any process that activates or increases the frequency, rate or extent of glycinergic synaptic transmission in the presence of zinc. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine. tmpzr1t_l9r_go_relaxed.owl zinc potentiation of glycinergic synaptic transmission biological_process owl:Class GO:0044578 biolink:NamedThing butyryl-CoA biosynthetic process The chemical reactions and pathway resulting in the formation of butyryl-CoA. tmpzr1t_l9r_go_relaxed.owl butyryl-CoA biosynthesis jl 2012-04-19T04:23:26Z biological_process owl:Class GO:0021935 biolink:NamedThing cerebellar granule cell precursor tangential migration The early migration of granule cell precursors in which cells move orthogonal to the direction of radial migration and ultimately cover the superficial zone of the cerebellar primordium. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050546 biolink:NamedThing 4-hydroxyphenylpyruvate decarboxylase activity Catalysis of the reaction: (4-hydroxyphenyl)pyruvate + H(+) = (4-hydroxyphenyl)acetaldehyde + CO(2). tmpzr1t_l9r_go_relaxed.owl 4-hydroxyphenylpyruvate carboxy-lyase (4-hydroxyphenylacetaldehyde-forming)|4-hydroxyphenylpyruvate carboxy-lyase activity RHEA:18697|KEGG_REACTION:R03341|MetaCyc:4.1.1.80-RXN|EC:4.1.1.80 molecular_function owl:Class GO:0034476 biolink:NamedThing U5 snRNA 3'-end processing Any process involved in forming the mature 3' end of a U5 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl U5 snRNA 3' end processing biological_process owl:Class GO:0015057 biolink:NamedThing thrombin-activated receptor activity A G protein-coupled receptor activity that is activated by cleavage by thrombin, which exposes a tethered ligand corresponding to the new N-terminus, which binds to the receptor and activates it. tmpzr1t_l9r_go_relaxed.owl thrombin receptor activity, G-protein coupled|thrombin receptor activity GO:0010655 molecular_function owl:Class GO:0047326 biolink:NamedThing inositol tetrakisphosphate 5-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP. tmpzr1t_l9r_go_relaxed.owl inositol 1,3,4,6-tetrakisphosphate 5-kinase activity|inositol-tetrakisphosphate 5-kinase activity|ATP:1D-myo-inositol-1,3,4,6-tetrakisphosphate 5-phosphotransferase activity|1D-myo-inositol-tetrakisphosphate 5-kinase activity MetaCyc:2.7.1.140-RXN|Reactome:R-HSA-1855228|EC:2.7.1.140|RHEA:12717 molecular_function owl:Class GO:0090423 biolink:NamedThing phytochelatin-metal complex formation A phytochelatin metabolic process in which a metal is incorporated with phytochelatin to form a complex. tmpzr1t_l9r_go_relaxed.owl LWM phytochelatin complex formation|low molecular weight phytochelatin complex formation tb 2012-04-20T03:46:45Z biological_process owl:Class GO:0102119 biolink:NamedThing gibberellin A20 carboxyl methyltransferase activity Catalysis of the reaction: gibberellin A20 + S-adenosyl-L-methionine <=> gibberellin A20 methyl ester + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11360 molecular_function owl:Class GO:0034664 biolink:NamedThing Ig heavy chain-bound endoplasmic reticulum chaperone complex A protein complex that is located in the endoplasmic reticulum (ER) and is formed by the association of an immunoglobulin heavy chain with the proteins of the ER chaperone complex; the latter include BiP, GRP94; CaBP1, protein disulfide isomerase (PDI), ERdj3, cyclophilin B, ERp72, GRP170, UDP-glucosyltransferase, and SDF2-L1. tmpzr1t_l9r_go_relaxed.owl immunoglobulin heavy chain-bound endoplasmic reticulum chaperone complex|Ig heavy chain-bound ER chaperone complex cellular_component owl:Class GO:1990446 biolink:NamedThing U1 snRNP binding Binding to a U1 small nuclear ribonucleoprotein particle. tmpzr1t_l9r_go_relaxed.owl mah 2014-08-06T09:29:44Z molecular_function owl:Class GO:0052676 biolink:NamedThing 3-methylbutanol:NAD oxidoreductase activity Catalysis of the reaction: 3-methylbutanol + NAD+ = 3-methylbutanal + NADH + H+. 3-methylbutanal is also known as isovaleraldehyde. tmpzr1t_l9r_go_relaxed.owl 3-methylbutanol:NAD+ oxidoreductase activity|3-methylbutyraldehyde reductase (NAD) activity|3-methylbutanal reductase (NAD) activity|isoamyl alcohol oxidase (NAD) activity RHEA:18529|KEGG_REACTION:R05685 ai 2011-04-12T11:22:42Z molecular_function owl:Class GO:0008740 biolink:NamedThing L-rhamnose isomerase activity Catalysis of the reaction: L-rhamnose = L-rhamnulose. tmpzr1t_l9r_go_relaxed.owl L-rhamnose ketol-isomerase activity|L-rhamnose aldose-ketose-isomerase activity|rhamnose isomerase activity KEGG_REACTION:R02437|RHEA:23160|MetaCyc:RHAMNISOM-RXN|EC:5.3.1.14 molecular_function owl:Class GO:0102528 biolink:NamedThing 7,8,4'-trihydroxyflavone methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 7,8,4'-trihydroxyflavone <=> H+ + S-adenosyl-L-homocysteine + 7,4'-dihydroxy, 8-methoxyflavone. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14658 molecular_function owl:Class GO:1902701 biolink:NamedThing pentose catabolic process to propan-2-ol The chemical reactions and pathways resulting in the breakdown of pentose to propan-2-ol. tmpzr1t_l9r_go_relaxed.owl pentose breakdown to propan-2-ol|pentose degradation to propan-2-ol|pentose catabolic process to isopropyl alcohol|solventogenesis|pentose catabolic process to isopropanol|pentose catabolism to propan-2-ol tb 2014-02-19T18:28:57Z GO:1990291 biological_process owl:Class GO:1905350 biolink:NamedThing Y-shaped link assembly The aggregation, arrangement and bonding together of a set of components to form a Y-shaped link. Two distinct protein complexes are known to be involved in proper linker assembly: the MKS complex and the NPHP complex. Improper assembly of Y-shaped links may cause malfunctioning of the transition zone as a molecular gate. tmpzr1t_l9r_go_relaxed.owl Y-shaped fibre assembly|Y-link assembly|membrane-microtubule complex assembly|Y-link structure formation|Y-shaped fibre formation|membrane-microtubule complex formation|Y-shaped fiber formation|Y-shaped fiber assembly|Y-link formation|Y-link structure assembly|Y-shaped linker assembly|Y-shaped assemblage assembly|Y-shaped link formation|Y-shaped linker formation|Y-shaped assemblage formation pr 2016-08-04T16:04:26Z biological_process owl:Class GO:0071206 biolink:NamedThing establishment of protein localization to juxtaparanode region of axon The directed movement of a protein to the juxtaparanode region of an axon. tmpzr1t_l9r_go_relaxed.owl establishment of protein localisation to juxtaparanode region of axon mah 2009-11-25T01:15:23Z biological_process owl:Class GO:0043528 biolink:NamedThing tRNA (m2G10) methyltransferase complex A protein complex required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNA. In S. cerevisiae, this complex consists of at least two subunits, Trm11p and Trm112p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043527 biolink:NamedThing tRNA methyltransferase complex A multimeric protein complex involved in the methylation of specific nucleotides in tRNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032788 biolink:NamedThing saturated monocarboxylic acid metabolic process The chemical reactions and pathways involving saturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and fully saturated C-C bonds. tmpzr1t_l9r_go_relaxed.owl saturated monocarboxylate metabolic process|saturated monocarboxylic acid metabolism biological_process owl:Class GO:0050500 biolink:NamedThing 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase activity Catalysis of the reaction: phosphate + beta-D-galactopyranosyl-(1->3)-N-acetyl-D-glucosamine = N-acetyl-D-glucosamine + alpha-D-galactopyranose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl beta-D-galactopyranosyl-(1,3)-N-acetyl-D-hexosamine:phosphate galactosyltransferase activity|beta-1,3-galactosyl-N-acetylhexosamine phosphorylase activity|beta-D-galactopyranosyl-(1->3)-N-acetyl-D-hexosamine:phosphate galactosyltransferase activity RHEA:20285|EC:2.4.1.211|MetaCyc:2.4.1.211-RXN molecular_function owl:Class GO:0002201 biolink:NamedThing somatic diversification of DSCAM-based immune receptors The somatic process that results in the generation of sequence diversity of the DSCAM-based immune receptors of insects. tmpzr1t_l9r_go_relaxed.owl Note that this type of immune receptor may not be limited to insects. biological_process owl:Class GO:0047533 biolink:NamedThing 2,5-dioxovalerate dehydrogenase (NADP+) activity Catalysis of the reaction: 2,5-dioxopentanoate + NADP+ + H2O = 2-oxoglutarate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 2,5-dioxopentanoate:NADP+ 5-oxidoreductase activity|2-oxoglutarate semialdehyde dehydrogenase activity|alpha-ketoglutaric semialdehyde dehydrogenase activity MetaCyc:25-DIOXOVALERATE-DEHYDROGENASE-RXN|RHEA:11296|EC:1.2.1.26 molecular_function owl:Class GO:0006423 biolink:NamedThing cysteinyl-tRNA aminoacylation The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. A cysteinyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a cysteine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047401 biolink:NamedThing trithionate hydrolase activity Catalysis of the reaction: H(2)O + trithionate = H(+) + sulfate + thiosulfate. tmpzr1t_l9r_go_relaxed.owl trithionate thiosulfohydrolase activity MetaCyc:3.12.1.1-RXN|EC:3.12.1.1|KEGG_REACTION:R01930|RHEA:21884 molecular_function owl:Class GO:0008256 biolink:NamedThing protein histidine pros-kinase activity Catalysis of the reaction: ATP + protein L-histidine = ADP + protein N(pi)-phospho-L-histidine. tmpzr1t_l9r_go_relaxed.owl HK2|protein-histidine pros-kinase activity|ATP:protein-L-histidine Npi-phosphotransferase activity|ATP:protein-L-histidine N-pros-phosphotransferase activity RHEA:22720|EC:2.7.13.1|MetaCyc:2.7.13.1-RXN molecular_function owl:Class GO:0042835 biolink:NamedThing BRE binding Binding to a BRE RNA element (Bruno response element). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903858 biolink:NamedThing protein localization to old growing cell tip A process in which a protein is transported to, or maintained in, a location within an old growing cell tip. tmpzr1t_l9r_go_relaxed.owl protein localisation to old growing cell tip|protein localization in old growing cell tip|protein localisation in old growing cell tip mah 2015-02-02T13:53:29Z biological_process owl:Class GO:0098823 biolink:NamedThing peptidyl-cysteine modification to S-amindino-L-cysteine The amidinylation of peptidyl-cysteine to form peptidyl-S-amidino-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0335 biological_process owl:Class GO:0000253 biolink:NamedThing 3-keto sterol reductase activity Catalysis of the reaction: a 3-beta-hydroxyl sterol + NADP+ = a 3-keto sterol + NADPH + H(+). tmpzr1t_l9r_go_relaxed.owl 3-keto-steroid reductase activity|3-KSR activity|3beta-hydroxy-steroid:NADP+ 3-oxidoreductase MetaCyc:RXN66-24|Reactome:R-HSA-194689|MetaCyc:RXN66-19|MetaCyc:RXN3O-4110|RHEA:18409|MetaCyc:RXN66-319|Reactome:R-HSA-194632|MetaCyc:1.1.1.270-RXN|EC:1.1.1.270|MetaCyc:RXN66-314 Note that zymosterol is cholesta-8,24-dien-3-ol. GO:0050576 molecular_function owl:Class GO:0097550 biolink:NamedThing transcription preinitiation complex A protein-DNA complex composed of proteins binding promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription. tmpzr1t_l9r_go_relaxed.owl PIC|preinitiation complex|DNA-templated transcriptional preinitiation complex|transcriptional pre-initiation complex|transcriptional preinitiation complex pr 2014-01-22T09:33:44Z cellular_component owl:Class GO:0075343 biolink:NamedThing modulation by symbiont of abscisic acid levels in host The alteration by an organism of the levels of abscisic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Note that this term is intended for use in annotation of symbiont gene products. For host gene products that regulate abscisic acid levels in the host, consider annotating to 'regulation of abscisic acid mediated signaling ; GO:0009787' or 'regulation of abscisic acid biosynthetic process ; GO:0010115'. biological_process owl:Class GO:0043738 biolink:NamedThing reduced coenzyme F420 dehydrogenase activity Catalysis of the reaction: methanophenazine + reduced coenzyme F420 = dihydromethanophenazine + coenzyme F420. tmpzr1t_l9r_go_relaxed.owl 1,5-dihydrocoenzyme F420 dehydrogenase activity|F420H2 dehydrogenase activity MetaCyc:RXN-8106|EC:1.5.98.3|RHEA:54752 molecular_function owl:Class GO:0030288 biolink:NamedThing outer membrane-bounded periplasmic space The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall. tmpzr1t_l9r_go_relaxed.owl outer membrane bounded periplasmic space|outer membrane-enclosed periplasmic space Wikipedia:Periplasmic_space cellular_component owl:Class GO:0018566 biolink:NamedThing 1,2-dihydroxynaphthalene-6-sulfonate 1,8a-dioxygenase activity Catalysis of the reaction: 1,2-dihydroxynaphthalene-6-sulfonate + O2 = H+ + (Z)-4-(2-hydroxy-5-sulfonatophenyl)-2-oxo-3-butenoate. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydroxynaphthalene-6-sulphonate 1,8a-dioxygenase activity EC:1.13.11.-|UM-BBD_reactionID:r0324 molecular_function owl:Class GO:0047647 biolink:NamedThing alkylacetylglycerophosphatase activity Catalysis of the reaction: 1-alkyl-2-acetyl-sn-glycerol 3-phosphate + H(2)O = 2-acetyl-1-alkyl-sn-glycerol + phosphate. tmpzr1t_l9r_go_relaxed.owl 1-alkyl-2-lyso-sn-glycero-3-P:acetyl-CoA acetyltransferase activity|1-alkyl-2-acetyl-sn-glycero-3-phosphate phosphohydrolase activity|alkylacetylglycerophosphate phosphatase activity EC:3.1.3.59|MetaCyc:ALKYLACETYLGLYCEROPHOSPHATASE-RXN|KEGG_REACTION:R03454|RHEA:18221 molecular_function owl:Class GO:0102836 biolink:NamedThing 1-18:1-2-16:1-monogalactosyldiacylglyceroldesaturase activity Catalysis of the reaction: 1-18:1-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:2-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8296|EC:1.14.19.23 molecular_function owl:Class GO:0015694 biolink:NamedThing mercury ion transport The directed movement of mercury (Hg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl mercuric ion transport|mercury transport biological_process owl:Class GO:0016348 biolink:NamedThing imaginal disc-derived leg joint morphogenesis The process in which the anatomical structures of an imaginal disc-derived leg joint are generated and organized. The leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030429 biolink:NamedThing kynureninase activity Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine. tmpzr1t_l9r_go_relaxed.owl L-kynurenine hydrolase activity|kynurenine hydrolase activity MetaCyc:KYNURENINASE-RXN|EC:3.7.1.3|RHEA:16813|Reactome:R-HSA-71217 molecular_function owl:Class GO:0047248 biolink:NamedThing nuatigenin 3-beta-glucosyltransferase activity Catalysis of the reaction: nuatigenin + UDP-D-glucose = H(+) + nuatigenin 3-beta-D-glucopyranoside + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:(20S,22S,25S)-22,25-epoxyfurost-5-ene-3beta,26-diol 3-O-beta-D-glucosyltransferase activity|nuatigenin 3beta-glucosyltransferase activity|uridine diphosphoglucose-nuatigenin glucosyltransferase activity|UDPglucose:(20S,22S,25S)-22,25-epoxyfurost-5-ene-3beta,26-diol 3-O-beta-D-glucosyltransferase activity EC:2.4.1.192|KEGG_REACTION:R04577|MetaCyc:2.4.1.192-RXN|RHEA:19329 molecular_function owl:Class GO:0033389 biolink:NamedThing putrescine biosynthetic process from arginine, using agmatinase The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine; in this pathway, arginine is converted to agmatine, and agmatine is converted to putrescine in a single enzymatic step. tmpzr1t_l9r_go_relaxed.owl putrescine formation from arginine, using agmatinase|putrescine biosynthesis from arginine, using agmatinase|putrescine anabolism from arginine, using agmatinase|putrescine synthesis from arginine, using agmatinase biological_process owl:Class GO:0062193 biolink:NamedThing D-ribose pyranase activity Catalysis of the reaction: beta-D-ribopyranose = beta-D-ribofuranose. tmpzr1t_l9r_go_relaxed.owl RHEA:25432|EC:5.4.99.62 dph 2019-12-09T16:49:07Z molecular_function owl:Class GO:0047207 biolink:NamedThing 1,2-beta-fructan 1F-fructosyltransferase activity Catalysis of the reaction: [(1->2)-beta-D-fructosyl](n) + [(1->2)-beta-D-fructosyl](m) = [(1->2)-beta-D-fructosyl](n+1) + [(1->2)-beta-D-fructosyl](m-1). tmpzr1t_l9r_go_relaxed.owl 1,2-beta-D-fructan 1F-fructosyltransferase activity|2,1-fructan:2,1-fructan 1-fructosyltransferase activity|FFT activity|1,2-beta-D-fructan 1(F)-fructosyltransferase activity|1,2-beta-D-fructan:1,2-beta-D-fructan 1(F)-beta-D-fructosyltransferase activity|2,1-beta-D-fructan:2,1-beta-D-fructan 1-beta-D-fructosyltransferase activity|fructan:fructan fructosyl transferase activity|1,2-beta-fructan 1(F)-fructosyltransferase activity|1,2-beta-D-fructan:1,2-beta-D-fructan 1F-beta-D-fructosyltransferase activity MetaCyc:2.4.1.100-RXN|EC:2.4.1.100 molecular_function owl:Class GO:0015319 biolink:NamedThing sodium:inorganic phosphate symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + inorganic phosphate(out) = Na+(in) + inorganic phosphate(in). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016430 biolink:NamedThing tRNA (adenine-N6-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N6-methyladenine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:tRNA (adenine-6-N-)-methyltransferase activity|S-adenosyl-L-methionine:tRNA (adenine-N6-)-methyltransferase activity RHEA:16785|MetaCyc:TRNA-ADENINE-N6--METHYLTRANSFERASE-RXN|EC:2.1.1.55 molecular_function owl:Class GO:0033445 biolink:NamedThing AGU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AGU codon. tmpzr1t_l9r_go_relaxed.owl AGT codon-amino acid adaptor activity|serine tRNA Note that in the standard genetic code, AGT codes for serine. molecular_function owl:Class GO:0002297 biolink:NamedThing T-helper 2 cell lineage commitment The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 2 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to extracellular organisms such as helminths, enhanced production of particular antibody isotypes, and pathological conditions such as allergy. tmpzr1t_l9r_go_relaxed.owl T-helper 2 cell fate commitment|Th2 fate commitment biological_process owl:Class GO:0048900 biolink:NamedThing anterior lateral line neuromast primordium migration The migration of a cluster of a relatively undifferentiated cell along the developing anterior lateral line, originating from cranial ectodermal placodes situated between the eye and the ear. The neuromast primordium deposits proneuromasts along the lateral line, from which the neuromasts will develop. tmpzr1t_l9r_go_relaxed.owl ALL neuromast primordium migration biological_process owl:Class GO:0098033 biolink:NamedThing icosahedral viral capsid, neck fiber A fiber attached to the neck at the base of some icosahedral viral capsids. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-19T15:07:39Z cellular_component owl:Class GO:0034400 biolink:NamedThing gerontoplast A plastid found in senescing, formerly green tissues that is derived from a chloroplast that undergoes an organized developmental program of senescence. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097233 biolink:NamedThing alveolar lamellar body membrane The lipid bilayer surrounding an alveolar lamellar body, a specialized secretory organelle found in type II pneumocytes and involved in the synthesis, secretion, and reutilization of pulmonary surfactant. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-26T10:30:24Z cellular_component owl:Class GO:0097208 biolink:NamedThing alveolar lamellar body A specialized secretory organelle found in type II pneumocytes and involved in the synthesis, secretion, and reutilization of pulmonary surfactant. tmpzr1t_l9r_go_relaxed.owl pr 2012-01-04T02:33:04Z cellular_component owl:Class GO:0034777 biolink:NamedThing recycling endosome lumen The volume enclosed by the membranes of a recycling endosome. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1904693 biolink:NamedThing midbrain morphogenesis The developmental process by which a midbrain is generated and organized. tmpzr1t_l9r_go_relaxed.owl mesencephalon morphogenesis|MB morphogenesis bf 2015-09-29T09:15:28Z biological_process owl:Class GO:1904977 biolink:NamedThing lymphatic endothelial cell migration The orderly movement of a lymphatic endothelial cell from one site to another in the wall of a lymphatic vessel. tmpzr1t_l9r_go_relaxed.owl dgh 2016-02-18T20:49:43Z biological_process owl:Class GO:0021860 biolink:NamedThing pyramidal neuron development The progression of a pyramidal neuron from its initial formation to its mature state. tmpzr1t_l9r_go_relaxed.owl projection neuron development biological_process owl:Class GO:0009972 biolink:NamedThing cytidine deamination The removal of amino group in the presence of water. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097482 biolink:NamedThing muscle cell postsynaptic specialization A postsynaptic specialization that is part of a neuromuscular junction. tmpzr1t_l9r_go_relaxed.owl muscle cell postsynaptic density|muscle fiber postsynaptic density pr 2013-07-02T09:47:40Z cellular_component owl:Class GO:0061155 biolink:NamedThing pulmonary artery endothelial tube morphogenesis The process in which the anatomical structures of a tube are generated and organized from the pulmonary artery endothelium. An pulmonary artery endothelium is an epithelium that lines the pulmonary artery. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-15T09:09:04Z biological_process owl:Class GO:0048564 biolink:NamedThing photosystem I assembly The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl GO:0010251 biological_process owl:Class GO:1905060 biolink:NamedThing calcium:cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration Any calcium:cation antiporter activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium:cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion levels dos 2016-03-18T12:32:17Z molecular_function owl:Class GO:0009783 biolink:NamedThing photosystem II antenna complex The antenna complex of photosystem II. A photosystem has two closely linked components, an antenna containing light-absorbing pigments and a reaction center. Each antenna contains one or more light-harvesting complexes (LHCs). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1903627 biolink:NamedThing regulation of dUTP diphosphatase activity Any process that modulates the frequency, rate or extent of dUTP diphosphatase activity. tmpzr1t_l9r_go_relaxed.owl regulation of dUTP nucleotidohydrolase activity|regulation of dUTPase activity|regulation of desoxyuridine 5'-triphosphate nucleotidohydrolase activity|regulation of dUTP pyrophosphatase activity|regulation of desoxyuridine 5'-triphosphatase activity|regulation of deoxyuridine-triphosphatase activity sl 2014-11-20T00:00:36Z biological_process owl:Class GO:0071355 biolink:NamedThing cellular response to interleukin-9 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-9 stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to IL-9 mah 2009-12-11T02:51:26Z biological_process owl:Class GO:0060901 biolink:NamedThing regulation of hair cycle by canonical Wnt signaling pathway The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that modulates the rate, frequency or extent of the hair cycle. tmpzr1t_l9r_go_relaxed.owl regulation of hair cycle by canonical Wnt receptor signaling pathway|regulation of hair cycle by canonical Wnt-activated signaling pathway|regulation of hair cycle by Wnt receptor signaling pathway through beta-catenin|regulation of hair cycle by canonical Wnt receptor signalling pathway dph 2009-08-13T02:41:10Z biological_process owl:Class GO:0033012 biolink:NamedThing porosome A permanent cup-shaped structure at the cell plasma membrane in secretory cells. Following a secretory stimulus, secretory vesicles transiently dock and fuse at the base of porosomes and release intravesicular contents dictated by the turgor pressure generated from the swelling of secretory vesicles. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Porosome cellular_component owl:Class GO:0036131 biolink:NamedThing prostaglandin D2 11-ketoreductase activity Catalysis of the reaction: prostaglandin D2 + H+ + NADPH -> 11-epi-prostaglandin F2alpha + NADP+. tmpzr1t_l9r_go_relaxed.owl PGD2 11-ketoreductase|prostaglandin 11-keto reductase KEGG_REACTION:R02799|RHEA:45316|EC:1.1.1.188|Reactome:R-HSA-2161614 bf 2012-03-05T10:27:29Z molecular_function owl:Class GO:0021640 biolink:NamedThing trochlear nerve maturation A developmental process, independent of morphogenetic (shape) change, that is required for the trochlear nerve to attain its fully functional state. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle. tmpzr1t_l9r_go_relaxed.owl CN IV maturation biological_process owl:Class GO:0031071 biolink:NamedThing cysteine desulfurase activity Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine. tmpzr1t_l9r_go_relaxed.owl cysteine desulfurylase activity|NIFS|IscS|SufS|L-cysteine:enzyme cysteine sulfurtransferase activity Reactome:R-HSA-947514|EC:2.8.1.7|Reactome:R-HSA-1362408|RHEA:43892 molecular_function owl:Class GO:0031993 biolink:NamedThing light transducer activity Absorbing energy from one or more photons and transferring their energy to another molecule, usually a protein, within the cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000301 biolink:NamedThing retrograde transport, vesicle recycling within Golgi The retrograde movement of substances within the Golgi, mediated by COP I vesicles. Cis-Golgi vesicles are constantly moving forward through the Golgi stack by cisternal progression, eventually becoming trans-Golgi vesicles. They then selectively transport membrane and luminal proteins from the trans- to the medial-Golgi while leaving others behind in the trans-Golgi cisternae; similarly, they selectively move proteins from the medial- to the cis-Golgi. tmpzr1t_l9r_go_relaxed.owl retrograde (vesicle recycling within Golgi) transport biological_process owl:Class GO:0021717 biolink:NamedThing inferior olivary nucleus maturation A developmental process, independent of morphogenetic (shape) change, that is required for the inferior olivary nucleus to attain its fully functional state. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements. tmpzr1t_l9r_go_relaxed.owl inferior olive maturation biological_process owl:Class GO:0002446 biolink:NamedThing neutrophil mediated immunity Any process involved in the carrying out of an immune response by a neutrophil. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090104 biolink:NamedThing pancreatic epsilon cell differentiation The process in which relatively unspecialized cells acquire specialized structural and functional features of a pancreatic epsilon cell. A pancreatic epsilon cell is a cell in the pancreas that secretes ghrelin. tmpzr1t_l9r_go_relaxed.owl pancreatic E cell differentiation tb 2009-11-18T11:48:52Z biological_process owl:Class GO:0061446 biolink:NamedThing endocardial cushion cell fate determination The process involved in endocardial cushion cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T09:22:13Z biological_process owl:Class GO:0006794 biolink:NamedThing phosphorus utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary phosphorus source and then activates genes to scavenge the last traces of the primary phosphorus source and to transport and metabolize alternative phosphorus sources. The utilization process begins when the cell or organism detects phosphorus levels, includes the phosphorus-containing substances, and ends when phosphorus is incorporated into the cell or organism's metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072192 biolink:NamedThing ureter epithelial cell differentiation The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell in the urothelium. The urothelium is the epithelial tube of the ureter. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-01T01:53:17Z biological_process owl:Class GO:0060717 biolink:NamedThing chorion development The biological process whose specific outcome is the progression of a chorion from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The chorion is an extraembryonic membrane. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-11T02:37:50Z biological_process owl:Class GO:0044515 biolink:NamedThing envenomation resulting in positive regulation of glucagon-like peptide receptor 1 activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of glucagon-like peptide receptor 1 activity in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-02-26T11:08:08Z biological_process owl:Class GO:0038111 biolink:NamedThing interleukin-7-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-7 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-7-mediated signalling pathway|IL-7-mediated signaling pathway bf 2012-03-22T10:19:27Z biological_process owl:Class GO:0061354 biolink:NamedThing planar cell polarity pathway involved in pericardium morphogenesis The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the pericardium. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-01T03:12:53Z biological_process owl:Class GO:0034466 biolink:NamedThing chromaffin granule lumen The volume enclosed by the membrane of a chromaffin granule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021616 biolink:NamedThing glossopharyngeal nerve formation The process that gives rise to the glossopharyngeal nerve. This process pertains to the initial formation of a structure from unspecified parts. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion. tmpzr1t_l9r_go_relaxed.owl CN IX formation|CN IX biosynthesis biological_process owl:Class GO:0004341 biolink:NamedThing gluconolactonase activity Catalysis of the reaction: D-glucono-1,5-lactone + H2O = D-gluconate. tmpzr1t_l9r_go_relaxed.owl lactonase activity|D-glucono-1,5-lactone lactonohydrolase activity|aldonolactonase activity|glucono-delta-lactonase activity|gulonolactonase activity RHEA:10440|EC:3.1.1.17|MetaCyc:GLUCONOLACT-RXN molecular_function owl:Class GO:0060134 biolink:NamedThing prepulse inhibition The process in which a startle magnitude is reduced when the startling stimulus is preceded by a low-intensity prepulse. tmpzr1t_l9r_go_relaxed.owl pre-pulse inhibition|PPI Wikipedia:Prepulse_inhibition biological_process owl:Class GO:0072275 biolink:NamedThing metanephric glomerulus morphogenesis The process in which the anatomical structures of the metanephric glomerulus are generated and organized. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T02:46:58Z biological_process owl:Class GO:0061230 biolink:NamedThing mesonephric juxtaglomerulus cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric juxtaglomerulus cell. tmpzr1t_l9r_go_relaxed.owl dph 2010-08-19T02:36:23Z biological_process owl:Class GO:0003399 biolink:NamedThing cytoneme morphogenesis The process in which the anatomical structures of a cytoneme are shaped. A cytoneme is a long, thin and polarized actin-based cytoplasmic extension that projects from a cell. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-09T10:03:32Z biological_process owl:Class GO:0004111 biolink:NamedThing creatine kinase activity Catalysis of the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl creatine phosphotransferase activity|MiMi-CK|ATP:creatine N-phosphotransferase activity|MM-CK|phosphocreatine kinase activity|CK-BB|creatine phosphokinase activity|CK-MB|CK|ATP:creatine phosphotransferase activity|MB-CK|CK-MM|Mi-CK|BB-CK|adenosine triphosphate-creatine transphosphorylase activity|CKMiMi RHEA:17157|Reactome:R-HSA-200318|EC:2.7.3.2|Reactome:R-HSA-200326|MetaCyc:CREATINE-KINASE-RXN|KEGG_REACTION:R01881 molecular_function owl:Class GO:0017119 biolink:NamedThing Golgi transport complex A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. Composed of 8 subunits COG1-8. tmpzr1t_l9r_go_relaxed.owl Sec34/35 complex|COG complex|conserved oligomeric Golgi complex cellular_component owl:Class GO:0060055 biolink:NamedThing angiogenesis involved in wound healing Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003208 biolink:NamedThing cardiac ventricle morphogenesis The process in which the cardiac ventricle is generated and organized. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-13T09:38:44Z biological_process owl:Class GO:0007412 biolink:NamedThing axon target recognition The process in which an axon recognizes and binds to a set of cells with which it may form stable connections. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019197 biolink:NamedThing phosphoenolpyruvate-dependent sugar phosphotransferase complex Includes phosphoenolpyruvate-protein phosphatase (enzyme I of the phosphotransferase system) and protein-N(PI)-phosphohistidine-sugar phosphotransferase (enzyme II of the phosphotransferase system). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0043663 biolink:NamedThing host bacteroid-containing symbiosome A symbiosome containing any of various structurally modified bacteria, such as those occurring on the root nodules of leguminous plants, of a host cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030315 biolink:NamedThing T-tubule Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane. tmpzr1t_l9r_go_relaxed.owl triad|transverse tubule Wikipedia:T-tubule cellular_component owl:Class GO:0035643 biolink:NamedThing L-DOPA receptor activity Combining with L-DOPA to initiate a change in cell activity. L-DOPA is the modified amino acid (2S)-2-amino-3-(3,4-dihydroxyphenyl) propanoic acid, and is the precursor to dopamine, norepinephrine (noradrenaline) and epinephrine. tmpzr1t_l9r_go_relaxed.owl L-beta-(3,4-Dihydroxyphenyl)alanine receptor activity bf 2011-01-20T10:34:23Z molecular_function owl:Class GO:0072122 biolink:NamedThing extraglomerular mesangial cell proliferation The multiplication or reproduction of extraglomerular glomerular mesangium cells by cell division, resulting in the expansion of their population. Extraglomerular mesangial cells (also known as lacis cells, Goormaghtigh cells) are light-staining cells in the kidney found outside the glomerulus, near the vascular pole and macula densa. tmpzr1t_l9r_go_relaxed.owl lacis cell proliferation|Goormaghtigh proliferation mah 2010-02-22T01:42:23Z biological_process owl:Class GO:0098677 biolink:NamedThing virion maturation Maturation of a virion after separation from the host cell. Not all viruses mature after separation. In those that do, maturation typically involves rearangement and/or cleavage of viral proteins, resulting in the virion becoming competent for reinfection. tmpzr1t_l9r_go_relaxed.owl viral particle maturation|virus particle maturation VZ:1946|UniProtKB-KW:KW-0917 dos 2017-01-19T12:49:22Z biological_process owl:Class GO:0045496 biolink:NamedThing male analia development The process whose specific outcome is the progression of the analia of the male over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062229 biolink:NamedThing regulation of larval somatic muscle development Any process that modulates the rate, frequency or extent of larval somatic muscle development. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-16T13:42:44Z biological_process owl:Class GO:0097557 biolink:NamedThing right posteriolateral flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right posteriolateral basal body and extends cytoplasmically toward the cell posterior, marking the right anterior boundary of the lateral shield and the right lateral region of the funis before exiting at the right lateral region of the cell body. tmpzr1t_l9r_go_relaxed.owl right posteriolateral cilium|right posterolateral flagellum|right posterolateral cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T13:24:55Z cellular_component owl:Class GO:0036360 biolink:NamedThing sorocarp stalk morphogenesis The process in which the sorocarp stalk is generated and organized. The sorocarp stalk is a tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl fruiting body stalk morphogenesis bf 2012-09-20T11:21:30Z biological_process owl:Class GO:0031288 biolink:NamedThing sorocarp morphogenesis The process in which the sorocarp is generated and organized. An example of this process is found in Dictyostelium discoideum. tmpzr1t_l9r_go_relaxed.owl fruiting body morphogenesis biological_process owl:Class GO:0001761 biolink:NamedThing beta-alanine transmembrane transporter activity Enables the transfer of beta-alanine from one side of a membrane to the other. Beta-alanine is 3-aminopropanoic acid. tmpzr1t_l9r_go_relaxed.owl beta-alanine transporter activity molecular_function owl:Class GO:0032640 biolink:NamedThing tumor necrosis factor production The appearance of tumor necrosis factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Tumor necrosis factor is an inflammatory cytokine produced by macrophages/monocytes during acute inflammation and which is responsible for a diverse range of signaling events within cells, leading to necrosis or apoptosis. tmpzr1t_l9r_go_relaxed.owl tumor necrosis factor biosynthetic process|tumor necrosis factor biosynthesis|TNF-alpha biosynthetic process|TNF alpha biosynthesis|TNF-alpha biosynthesis|tumor necrosis factor anabolism|tumor necrosis factor secretion|tumor necrosis factor formation|Tnfa production|tumor necrosis factor-alpha production|tumor necrosis factor synthesis|TNF production|TNF biosynthesis|TNF biosynthetic process|TNF-alpha production|cachectin production Note that this term refers only to the specific, original 'tumor necrosis factor' protein (TNF) and not other members of the tumor necrosis factor superfamily (those with the gene symbol root 'TNFSF'). That this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. sl 2015-06-15T22:59:26Z GO:1990774|GO:0042533 biological_process owl:Class GO:0098558 biolink:NamedThing lumenal side of smooth endoplasmic reticulum membrane The side (leaflet) of the smooth endoplasmic reticulum membrane that faces the lumen. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T12:19:28Z cellular_component owl:Class GO:0030241 biolink:NamedThing skeletal muscle myosin thick filament assembly The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in skeletal muscle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0007351 biolink:NamedThing tripartite regional subdivision Subdivision of the embryo along the anterior/posterior axis into anterior, posterior and terminal regions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036332 biolink:NamedThing placental growth factor-activated receptor activity Combining with placental growth factor (PlGF) and transmitting the signal across the plasma membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl PlGF receptor activity|PlGF-activated receptor activity|placental growth factor receptor activity bf 2012-09-05T09:34:37Z molecular_function owl:Class GO:0036323 biolink:NamedThing vascular endothelial growth factor receptor-1 signaling pathway Any series of molecular signals initiated by the binding of an extracellular ligand to a vascular endothelial growth factor receptor-1 (VEGFR-1) located on the surface of the receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl VEGFR-1 signaling pathway|FLT1 signaling pathway|VEGFR1 signaling pathway bf 2012-09-04T15:11:21Z biological_process owl:Class GO:0004697 biolink:NamedThing protein kinase C activity Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. This reaction requires diacylglycerol. tmpzr1t_l9r_go_relaxed.owl PKCdelta|PKC activity|PKC|nPKCtheta|PKCalpha|nPKC|nPKCdelta|ATP:protein phosphotransferase (diacylglycerol-dependent) activity|diacylglycerol-activated phospholipid-dependent protein kinase C activity|PKCgamma|PKCbeta|PKCzeta|STK24|nPKCepsilon|PKCepsilon|cPKCalpha|cPKC|diacylglycerol-activated phospholipid-dependent PKC activity|nPKCeta|protein kinase Cepsilon activity|cPKCbeta|cPKCgamma|Pkc1p Reactome:R-HSA-1433508|Reactome:R-HSA-9010681|Reactome:R-HSA-5625784|Reactome:R-HSA-751040|Reactome:R-HSA-5671749|Reactome:R-HSA-927889|Reactome:R-HSA-5229194|Reactome:R-HSA-450533|EC:2.7.11.13|Reactome:R-HSA-9626817|Reactome:R-HSA-193703|Reactome:R-HSA-2730863|Reactome:R-HSA-74615|Reactome:R-HSA-5138432|Reactome:R-HSA-909552|Reactome:R-HSA-9021357|Reactome:R-HSA-8934446|Reactome:R-HSA-2179413|Reactome:R-HSA-429698|Reactome:R-HSA-5218823|Reactome:R-HSA-9632858|Reactome:R-HSA-450550|Reactome:R-HSA-198314|Reactome:R-HSA-374664|Reactome:R-HSA-5623667|MetaCyc:2.7.11.13-RXN|Reactome:R-HSA-5218805 GO:0004701 molecular_function owl:Class GO:0061524 biolink:NamedThing central canal development The process whose specific outcome is the formation of the central canal of the spinal cord from its formation to the mature structure. The central canal is a spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-20T08:18:31Z biological_process owl:Class GO:1903823 biolink:NamedThing telomere single strand break repair Single strand break repair that takes place in a telomere. tmpzr1t_l9r_go_relaxed.owl telomeric single strand break repair|telomere SSBR|single strand break repair in telomere|telomere single-strand break repair jl 2015-01-19T16:12:29Z biological_process owl:Class GO:0048160 biolink:NamedThing primary follicle stage The stage in oogenesis when a single layer of cuboidal follicle cells surrounds the oocyte. The oocyte nucleus is large. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 3 biological_process owl:Class GO:1902375 biolink:NamedThing nuclear tRNA 3'-trailer cleavage, endonucleolytic Any tRNA 3'-trailer cleavage, endonucleolytic that takes place in nucleus. tmpzr1t_l9r_go_relaxed.owl tRNA 3'-end cleavage, endonucleolytic in cell nucleus|endonucleolytic tRNA 3'-end cleavage in cell nucleus|tRNA 3'-end cleavage, endonucleolytic in nucleus|endonucleolytic tRNA 3'-trailer cleavage in cell nucleus|tRNA 3'-trailer cleavage, endonucleolytic in cell nucleus|endonucleolytic tRNA 3'-end cleavage in nucleus|endonucleolytic tRNA 3'-trailer cleavage in nucleus al 2013-08-30T09:17:30Z biological_process owl:Class GO:0020031 biolink:NamedThing polar ring of apical complex An electron dense ring at the most anterior position of the apical complex, from which the conoid fibers originate; formed during an invasive life cycle stage of an apicomplexan parasite. tmpzr1t_l9r_go_relaxed.owl anterior polar ring of apical complex|upper polar ring of apical complex cellular_component owl:Class GO:0002044 biolink:NamedThing blood vessel endothelial cell migration involved in intussusceptive angiogenesis The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during intussusceptive angiogenesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0003091 biolink:NamedThing renal water homeostasis Renal process involved in the maintenance of an internal steady state of water in the body. tmpzr1t_l9r_go_relaxed.owl water homeostasis by the renal system biological_process owl:Class GO:0048258 biolink:NamedThing 3-ketoglucose-reductase activity Catalysis of the reaction: NADP+ + 3-dehydro-alpha-D-glucose = NADPH + alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:KETOGLUCOSE-REDUCTASE-RXN molecular_function owl:Class GO:0014729 biolink:NamedThing regulation of the velocity of shortening of skeletal muscle modulating contraction Any process that modulates velocity of shortening of a skeletal muscle contraction. The shortening leads to reduction of the length of muscle fibers and sarcomeres. tmpzr1t_l9r_go_relaxed.owl regulation of the velocity of shortening of skeletal muscle during contraction biological_process owl:Class GO:0002010 biolink:NamedThing excitation of vasomotor center by baroreceptor signaling The process in which the molecular signal from the arterial baroreceptors is relayed to the vasomotor center causing it to signal increase arterial pressure. tmpzr1t_l9r_go_relaxed.owl excitation of vasomotor center by baroreceptor signalling biological_process owl:Class GO:0072260 biolink:NamedThing metanephric interstitial fibroblast fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric interstitial fibroblast. tmpzr1t_l9r_go_relaxed.owl metanephros interstitial cell fate commitment mah 2010-03-19T04:18:10Z biological_process owl:Class GO:0009947 biolink:NamedThing centrolateral axis specification The establishment, maintenance and elaboration of the centrolateral axis. In plants, this axis is duplicated and runs from the midrib to the margin of the leaf. tmpzr1t_l9r_go_relaxed.owl centrolateral axis determination|mediolateral axis specification biological_process owl:Class GO:0034188 biolink:NamedThing apolipoprotein A-I receptor activity Combining with apolipoprotein A-I and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0060342 biolink:NamedThing photoreceptor inner segment membrane The membrane surrounding the inner segment of a vertebrate photoreceptor. The photoreceptor inner segment contains mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071916 biolink:NamedThing dipeptide transmembrane transporter activity Enables the transfer of a dipeptide from one side of a membrane to the other. A dipeptide is a combination of two amino acids linked together by a peptide (-CO-NH-) bond. tmpzr1t_l9r_go_relaxed.owl dipeptide transporter activity mah 2010-09-24T10:32:36Z GO:0042936 molecular_function owl:Class GO:1902671 biolink:NamedThing left anterior basal body Any ciliary basal body that is part of a left anterior flagellum found in Giardia species (trophozoite stage). tmpzr1t_l9r_go_relaxed.owl left anterior flagellum ciliary basal body|cilium basal body of left anterior cilium|ciliary basal body of left anterior flagellum|cilial basal body of left anterior cilium|cilium basal body of left anterior flagellum|cilial basal body of left anterior flagellum|microtubule basal body of left anterior cilium|ciliary basal body of left anterior cilium|microtubule basal body of left anterior flagellum Note that we deem cilium and microtubule-based flagellum to be equivalent. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T14:28:44Z cellular_component owl:Class GO:0097554 biolink:NamedThing left anterior flagellum A cilium (also called flagellum) found in Giardia species (trophozoite stage). It originates at the left anterior basal body, extends laterally through the cytoplasm, crosses the right anterior axoneme, and exits as a membrane-bound flagellum on the anterior left side of the cell. tmpzr1t_l9r_go_relaxed.owl left anterior cilium Note that we deem cilium and microtubule-based flagellum to be equivalent; the primary term name reflects frequency of use. Also note that, due to the asymmetric nature of the Giardia trophozoite, this term is defined spatially as the trophozoite is viewed from the dorsal side, with the two nuclei dorsal to the ventral disc, and the ventral disc toward the anterior. pr 2014-02-05T12:47:41Z cellular_component owl:Class GO:0014035 biolink:NamedThing neural crest cell fate determination The process in which a cell becomes capable of differentiating autonomously into a neural crest cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035622 biolink:NamedThing intrahepatic bile duct development The progression of the intrahepatic bile ducts over time, from their formation to the mature structure. Intrahepatic bile ducts (bile ducts within the liver) collect bile from bile canaliculi in the liver, and connect to the extrahepatic bile ducts (bile ducts outside the liver). tmpzr1t_l9r_go_relaxed.owl intrahepatic biliary duct development|IHBD development bf 2010-12-08T04:10:50Z biological_process owl:Class GO:1904158 biolink:NamedThing axonemal central apparatus assembly The aggregation, arrangement and bonding together of a set of components to form an axonemal central apparatus. tmpzr1t_l9r_go_relaxed.owl axonemal central apparatus formation krc 2015-04-16T18:46:11Z biological_process owl:Class GO:0034749 biolink:NamedThing Scrib-APC complex A protein complex that contains the Scribble protein (a cell polarity determinant) and the tumor suppressor protein adenomatous polyposis coli (APC); may be involved in the control of cell proliferation. tmpzr1t_l9r_go_relaxed.owl hScrib-APC complex Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'. cellular_component owl:Class GO:0007495 biolink:NamedThing visceral mesoderm-endoderm interaction involved in midgut development The process of cell-cell signaling between visceral mesoderm cells and endoderm cells that is involved in the differentiation of cells in the midgut. tmpzr1t_l9r_go_relaxed.owl visceral mesoderm/endoderm interaction biological_process owl:Class GO:0050947 biolink:NamedThing negative regulation of early stripe melanocyte differentiation Any process that stops, prevents, or reduces the frequency, rate or extent of early stripe melanocyte differentiation. tmpzr1t_l9r_go_relaxed.owl negative regulation of early stripe melanophore differentiation|down-regulation of early stripe melanocyte differentiation|inhibition of early stripe melanocyte differentiation|down regulation of early stripe melanocyte differentiation|downregulation of early stripe melanocyte differentiation biological_process owl:Class GO:0015437 biolink:NamedThing lipopolysaccharide floppase activity Enables the transfer of a lipopolysaccharide from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl lipopolysaccharide-transporting ATPase activity|ATPase-coupled intramembrane lipopolysaccharide transporter activity|ATP-dependent intramembrane lipopolysaccharide transporter activity|lipopolysaccharide floppase activity (cytosolic to exoplasmic leaftlet)|LPS-transporting ATPase activity molecular_function owl:Class GO:0061734 biolink:NamedThing parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization A positive regulation of the macromitophagy pathway that is triggered by mitochondrial depolarization and requires the function of a parkin-family molecule. tmpzr1t_l9r_go_relaxed.owl Park2-mediated stimulation of mitophagy in response to mitochondrial depolarization|PRKN-mediated stimulation of mitophagy in response to mitochondrial depolarization dph 2015-09-14T13:48:57Z biological_process owl:Class GO:0061626 biolink:NamedThing pharyngeal arch artery morphogenesis The process in which the anatomical structures of a pharyngeal arch artery is generated and organized. The pharyngeal arch arteries are a series of six paired embryological vascular structures, the development of which give rise to several major arteries, such as the stapedial artery, the middle meningeal artery, the internal carotid artery and the pulmonary artery. tmpzr1t_l9r_go_relaxed.owl aortic arch artery morphogenesis dph 2014-05-09T15:34:06Z biological_process owl:Class GO:1902772 biolink:NamedThing positive regulation of phosphorelay signal transduction system involved in hydrogen peroxide mediated signaling pathway Any positive regulation of phosphorelay signal transduction system that is involved in hydrogen peroxide mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl up-regulation of two-component signal transduction involved in H2O2 mediated signaling pathway|stimulation of two-component signal transduction involved in hydrogen peroxide mediated signalling pathway|activation of two-component signal transduction involved in hydrogen peroxide mediated signaling pathway|up regulation of two-component signal transduction involved in hydrogen peroxide mediated signaling pathway|positive regulation of two-component signal transduction system (phosphorelay) involved in H2O2 mediated signaling pathway|up-regulation of two-component signal transduction involved in hydrogen peroxide mediated signaling pathway|positive regulation of histidyl-aspartyl phosphorelay involved in H2O2 mediated signaling pathway|positive regulation of two-component signal transduction system (phosphorelay) involved in hydrogen peroxide mediated signalling pathway|positive regulation of two-component signal transduction system (phosphorelay) involved in hydrogen peroxide mediated signaling pathway|positive regulation of phosphorelay signal transduction system involved in H2O2 mediated signaling pathway|activation of two-component signal transduction involved in hydrogen peroxide mediated signalling pathway|upregulation of two-component signal transduction involved in hydrogen peroxide mediated signaling pathway|stimulation of two-component signal transduction involved in H2O2 mediated signaling pathway|stimulation of two-component signal transduction involved in hydrogen peroxide mediated signaling pathway|up regulation of two-component signal transduction involved in H2O2 mediated signaling pathway|positive regulation of histidyl-aspartyl phosphorelay involved in hydrogen peroxide mediated signaling pathway|up-regulation of two-component signal transduction involved in hydrogen peroxide mediated signalling pathway|upregulation of two-component signal transduction involved in hydrogen peroxide mediated signalling pathway|positive regulation of phosphorelay signal transduction system involved in hydrogen peroxide mediated signalling pathway|activation of two-component signal transduction involved in H2O2 mediated signaling pathway|upregulation of two-component signal transduction involved in H2O2 mediated signaling pathway|positive regulation of histidyl-aspartyl phosphorelay involved in hydrogen peroxide mediated signalling pathway|up regulation of two-component signal transduction involved in hydrogen peroxide mediated signalling pathway al 2014-03-17T11:42:08Z biological_process owl:Class GO:0072360 biolink:NamedThing vascular cord development The progression of the vascular cord over time from its initial formation until its mature state. The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis. tmpzr1t_l9r_go_relaxed.owl mah 2010-11-16T11:46:55Z biological_process owl:Class GO:0001874 biolink:NamedThing (1->3)-beta-D-glucan immune receptor activity Combining with (1->3)-beta-D-glucans to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-glucan receptor activity|beta-1,3-D-glucan receptor activity|(1->3)-beta-D-glucan receptor activity|zymosan receptor activity|(1,3)-beta-D-glucan receptor activity molecular_function owl:Class GO:0120121 biolink:NamedThing tripartite attachment complex A three-part cytoskeletal structure in kinetoplastid species linking mitochondrial DNA organised in a kinetoplast through the mitochondrial membranes to the basal body. tmpzr1t_l9r_go_relaxed.owl TAC krc 2017-12-12T00:07:37Z cellular_component owl:Class GO:0071730 biolink:NamedThing beak formation The process that gives rise to the beak. This process pertains to the initial formation of a structure from unspecified parts. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-17T03:57:07Z biological_process owl:Class GO:0044514 biolink:NamedThing envenomation resulting in positive regulation of G protein-coupled receptor activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of G protein-coupled receptor activity in of the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in positive regulation of G-protein coupled receptor activity in other organism jl 2012-02-26T11:06:15Z biological_process owl:Class GO:0000237 biolink:NamedThing leptotene The cell cycle phase which is the first stage of prophase I in meiosis, and during which the chromosomes first become visible. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Leptotene|Wikipedia:Meiosis#Leptotene Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0003193 biolink:NamedThing pulmonary valve formation The developmental process pertaining to the initial formation of the pulmonary valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:11:20Z biological_process owl:Class GO:0106125 biolink:NamedThing reservosome matrix A matrix composed of planar membranes, vesicles and lipid inclusions within the reservosome. tmpzr1t_l9r_go_relaxed.owl hjd 2018-05-03T18:00:03Z cellular_component owl:Class GO:0003060 biolink:NamedThing negative regulation of the force of heart contraction by acetylcholine The process in which acetylcholine released from vagus nerve endings binds to muscarinic receptors and decreases the force of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl decreased force of heart contraction by acetylcholine biological_process owl:Class GO:1905720 biolink:NamedThing cytoplasmic microtubule bundle Any microtubule bundle that is part of a cytoplasm. tmpzr1t_l9r_go_relaxed.owl microtubule fascicle of cytoplasm|microtubule bundle of cytoplasm mah 2016-11-24T16:52:02Z cellular_component owl:Class GO:0034970 biolink:NamedThing histone H3-R2 methylation The modification of histone H3 by addition of a methyl group to arginine at position 2 of the histone. tmpzr1t_l9r_go_relaxed.owl histone lysine H3 R2 methylation|histone H3 R2 methylation|histone H3R2me biological_process owl:Class GO:0061447 biolink:NamedThing endocardial cushion cell fate specification The process involved in the specification of endocardial cushion cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. tmpzr1t_l9r_go_relaxed.owl dph 2012-03-13T09:25:56Z biological_process owl:Class GO:0044471 biolink:NamedThing envenomation resulting in pore formation in membrane of other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the aggregation, arrangement and bonding together of a set of components to form a pore complex in a membrane of the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T01:39:47Z biological_process owl:Class GO:0000475 biolink:NamedThing maturation of 2S rRNA Any process involved in the maturation of a precursor 2S ribosomal RNA (rRNA) molecule into a mature 2S rRNA molecule. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021834 biolink:NamedThing chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration The creation and reception of signals that guide olfactory bulb interneuron precursors down concentration gradients towards the olfactory bulb. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis involved in embryonic olfactory bulb interneuron precursor migration biological_process owl:Class GO:0010521 biolink:NamedThing telomerase inhibitor activity Binds to and stops, prevents or reduces the activity of telomerase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003410 biolink:NamedThing anterior rotation of the optic cup A 90 degree-rotation of the optic cup resulting in its alignment with the anterior-posterior body axis. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T02:49:48Z biological_process owl:Class GO:0042421 biolink:NamedThing norepinephrine biosynthetic process The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine. tmpzr1t_l9r_go_relaxed.owl levarterenol biosynthesis|norepinephrine formation|levarterenol biosynthetic process|noradrenaline biosynthetic process|noradrenaline biosynthesis|norepinephrine synthesis|norepinephrine biosynthesis|norepinephrine anabolism biological_process owl:Class GO:0061144 biolink:NamedThing alveolar secondary septum development The progression of a secondary alveolar septum over time, from its formation to the mature structure. A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-25T10:43:55Z biological_process owl:Class GO:0070267 biolink:NamedThing oncosis A cellular process that results in swelling of the cell body, and that is morphologically characteristic of necrotic cell death. tmpzr1t_l9r_go_relaxed.owl Note that oncosis is sometimes described as a type of cell death, but recent nomenclature recommendations define it as a feature of necrotic cell death rather than a distinct mode of cell death. biological_process owl:Class GO:1990717 biolink:NamedThing axonemal central bridge Part of the 9+2 axoneme, that occurs in most motile cilia, consisting of the two bridges which connect the central pair of single microtubules. tmpzr1t_l9r_go_relaxed.owl krc 2015-03-27T22:38:31Z cellular_component owl:Class GO:0047520 biolink:NamedThing 11-cis-retinyl-palmitate hydrolase activity Catalysis of the reaction: 11-cis-retinyl palmitate + H(2)O = 11-cis-retinol + H(+) + palmitate. tmpzr1t_l9r_go_relaxed.owl 11-cis-retinyl-palmitate acylhydrolase activity|RPH|11-cis-retinol palmitate esterase activity EC:3.1.1.63|KEGG_REACTION:R03049|Reactome:R-HSA-2465941|RHEA:19697|MetaCyc:11-CIS-RETINYL-PALMITATE-HYDROLASE-RXN molecular_function owl:Class GO:2000817 biolink:NamedThing regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore Any regulation of histone H3-T3 phosphorylation that is involved in chromosome passenger complex localization to kinetochore. tmpzr1t_l9r_go_relaxed.owl regulation of histone H3-T3 phosphorylation involved in CPC complex localization to kinetochore|regulation of histone H3-T3 phosphorylation involved in CPC localization to kinetochore|regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localisation to kinetochore|regulation of histone H3-T3 phosphorylation involved in chromosomal passenger complex localization to kinetochore mah 2011-07-12T11:37:40Z biological_process owl:Class GO:0034709 biolink:NamedThing methylosome A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains. tmpzr1t_l9r_go_relaxed.owl 20S methylosome|20S methyltransferase complex cellular_component owl:Class GO:0008158 biolink:NamedThing hedgehog receptor activity Combining with a member of the hedgehog protein family and transmitting the signal across the membrane to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl patched activity molecular_function owl:Class GO:0030599 biolink:NamedThing pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate. tmpzr1t_l9r_go_relaxed.owl pectin pectylhydrolase activity|pectase activity|pectin demethoxylase activity|pectin methyl esterase activity|pectin methoxylase activity|pectinoesterase activity|pectin methylesterase activity EC:3.1.1.11|MetaCyc:PECTINESTERASE-RXN|RHEA:22380 molecular_function owl:Class GO:0021725 biolink:NamedThing superior raphe nucleus development The process whose specific outcome is the progression of the superior raphe nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl anterior raphe nucleus development|superior central nucleus development biological_process owl:Class GO:0003326 biolink:NamedThing pancreatic A cell fate commitment The commitment of a cell to a pancreatic A cell and its capacity to differentiate into a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon. tmpzr1t_l9r_go_relaxed.owl dph 2009-11-02T08:29:00Z biological_process owl:Class GO:0034508 biolink:NamedThing centromere complex assembly The aggregation, arrangement and bonding together of proteins and centromeric DNA molecules to form a centromeric protein-DNA complex. Includes the formation of the chromatin structures which form a platform for the kinetochore, and assembly of the kinetochore onto this specialized chromatin. In fission yeast and higher eukaryotes this process also includes the formation of heterochromatin at the outer repeat (pericentric) regions of the centromere. tmpzr1t_l9r_go_relaxed.owl chromosome, centromeric region assembly|centromere assembly|centromere organization biological_process owl:Class GO:0044626 biolink:NamedThing envenomation resulting in positive regulation of cell migration in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the positive regulation of cell migration in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-07-04T05:08:21Z biological_process owl:Class GO:0090512 biolink:NamedThing eisosome membrane domain/MCC A plasma membrane part that is composed of a furrow-like plasma membrane domain and associated integral transmembrane proteins. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-07T17:00:19Z cellular_component owl:Class GO:0032483 biolink:NamedThing regulation of Rab protein signal transduction Any process that modulates the frequency, rate or extent of Rab protein signal transduction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106232 biolink:NamedThing hydroxyisourate hydrolase complex A hydrolase complex that converts 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline. This is the second step of the three-step enzymatic reaction that degrades uric acid to (S)-allantoin. tmpzr1t_l9r_go_relaxed.owl HIU hydrolase complex|HIUH complex|5-hydroxyisourate hydrolase complex hjd 2019-10-31T16:34:19Z cellular_component owl:Class GO:0001520 biolink:NamedThing outer dense fiber A supramolecular fiber found in the flagella of mammalian sperm that surrounds the nine microtubule doublets. These dense fibers are stiff and noncontractile. In human, they consist of about 10 major and at least 15 minor proteins, where all major proteins are ODF1, ODF2 or ODF2-related proteins. tmpzr1t_l9r_go_relaxed.owl outer dense fibre cellular_component owl:Class GO:0007381 biolink:NamedThing specification of segmental identity, labial segment The specification of the characteristic structures of the labial segment following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized. tmpzr1t_l9r_go_relaxed.owl See also the fly_anatomy.ontology term 'labial segment ; FBbt:00000014'. biological_process owl:Class GO:2000744 biolink:NamedThing positive regulation of anterior head development Any process that activates or increases the frequency, rate or extent of anterior head development. tmpzr1t_l9r_go_relaxed.owl yaf 2011-06-14T09:44:17Z biological_process owl:Class GO:0019902 biolink:NamedThing phosphatase binding Binding to a phosphatase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902577 biolink:NamedThing protein localization to medial cortical node A process in which a protein is transported to, or maintained in, a location within a medial cortical node. tmpzr1t_l9r_go_relaxed.owl protein localisation in medial cortical node|protein localization in medial cortical node|protein localisation to medial cortical node mah 2013-12-17T14:09:28Z biological_process owl:Class GO:0036071 biolink:NamedThing N-glycan fucosylation The process of transferring a fucosyl group to an N-glycan. An N-glycan is the carbohydrate portion of an N-glycoprotein when attached to a nitrogen from asparagine or arginine side-chains. tmpzr1t_l9r_go_relaxed.owl glycoprotein fucosylation bf 2011-12-15T04:54:24Z biological_process owl:Class GO:0021729 biolink:NamedThing superior reticular formation development The process whose specific outcome is the progression of the superior reticular formation over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005769 biolink:NamedThing early endosome A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_20090701 cellular_component owl:Class GO:0061779 biolink:NamedThing Tapasin-ERp57 complex Subunit of the MHC class I peptide loading complex (GO:0042824) (=PLC) involved in the assembly of the heavy-chain-beta2-microglobulin dimers of the MHC class I molecules that fold with eight to ten residue peptides in the endoplasmic reticulum. Required for the inhibition of the reduction of the disulfide bonds of the heavy chains and the assembly and stabilization of the PLC, suggesting it may play a structural rather than a catalytic role. tmpzr1t_l9r_go_relaxed.owl dph 2016-08-05T12:12:08Z cellular_component owl:Class GO:0060481 biolink:NamedThing lobar bronchus epithelium development The biological process whose specific outcome is the progression of a lobar bronchus epithelium from an initial condition to its mature state. This process begins with the formation of the lobar bronchus epithelium and ends with the mature structure. The lobar bronchus epithelium is the tissue made up of epithelial cells that lines the inside of the lobar bronchus. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048132 biolink:NamedThing female germ-line stem cell asymmetric division The self-renewing division of a germline stem cell in the female gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the female gametes. tmpzr1t_l9r_go_relaxed.owl female germ-line stem cell renewal GO:0048141 biological_process owl:Class GO:0016183 biolink:NamedThing synaptic vesicle coating The formation of clathrin coated pits in the presynaptic membrane endocytic zone, triggered by the presence of high concentrations of synaptic vesicle components. This process leads to, but does not include budding of the membrane to form new vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034535 biolink:NamedThing 1,2-dihydroxy-8-methylnaphthalene dioxygenase activity Catalysis of the reaction: 1,2-dihydroxy-8-methylnaphthalene + O2 = 2-hydroxy-8-methylchromene-2-carboxylate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0781 molecular_function owl:Class GO:0050161 biolink:NamedThing succinyl-CoA:oxalate CoA-transferase Catalysis of the reaction: oxalate + succinyl-CoA = oxalyl-CoA + succinate. tmpzr1t_l9r_go_relaxed.owl succinyl-beta-ketoacyl-CoA transferase activity|oxalate coenzyme A-transferase activity|oxalate CoA-transferase activity|succinyl-CoA:oxalate CoA-transferase activity RHEA:23588|EC:2.8.3.2|MetaCyc:OXALATE-COA-TRANSFERASE-RXN|KEGG_REACTION:R01559 molecular_function owl:Class GO:0080096 biolink:NamedThing phosphatidate-sterol O-acyltransferase activity Catalysis of the reaction: a phosphatidate + a sterol = a sterol ester + a lysophosphatidate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T03:41:42Z molecular_function owl:Class GO:0090506 biolink:NamedThing axillary shoot meristem initiation A developmental process that results in the initiation of an axillary shoot meristem. An axillary shoot meristem is a shoot meristem formed in the axil of a leaf. tmpzr1t_l9r_go_relaxed.owl axillary bud meristem initiation tb 2012-10-23T14:47:00Z biological_process owl:Class GO:0090383 biolink:NamedThing phagosome acidification Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion. tmpzr1t_l9r_go_relaxed.owl phagosomal acidification tb 2010-10-27T10:20:22Z biological_process owl:Class GO:0047262 biolink:NamedThing polygalacturonate 4-alpha-galacturonosyltransferase activity Catalysis of the reaction: UDP-D-galacturonate + 1,4-alpha-D-galacturonosyl(n) = 1,4-alpha-D-galacturonosyl(n+1) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-D-galacturonate:1,4-alpha-poly-D-galacturonate 4-alpha-D-galacturonosyltransferase activity|uridine diphosphogalacturonate-polygalacturonate alpha-galacturonosyltransferase activity|UDP galacturonate-polygalacturonate alpha-galacturonosyltransferase activity EC:2.4.1.43|RHEA:13573|MetaCyc:2.4.1.43-RXN GO:0050375 molecular_function owl:Class GO:0061579 biolink:NamedThing N-acyl homoserine lactone synthase activity Catalyzing the reaction: acyl-[acyl-carrier-protein] + S-adenosyl-L-methionine -> [acyl-carrier- protein] + S-methyl-5'-thioadenosine + N-acyl-L-homoserine lactone. tmpzr1t_l9r_go_relaxed.owl autoinducer-1 synthase RHEA:10096|EC:2.3.1.184 dph 2013-11-15T19:48:23Z molecular_function owl:Class GO:0102760 biolink:NamedThing 6-deoxocathasterone hydroxylase activity Catalysis of the reaction: 6-deoxycathasterone + O2 + a reduced electron acceptor <=> 6-deoxoteasterone + H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-774 molecular_function owl:Class GO:0031132 biolink:NamedThing serine 3-dehydrogenase activity Catalysis of the reaction: L-serine + NADP(+) = L-alpha-formylglycine + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-serine:NADP+ 3-oxidoreductase activity Wikipedia:Serine_3-dehydrogenase|MetaCyc:RXN0-2201|EC:1.1.1.276|KEGG_REACTION:R06126|RHEA:21596 molecular_function owl:Class GO:0010159 biolink:NamedThing specification of animal organ position The regionalization process in which information that determines the correct position at which animal organ primordia are formed is generated and perceived resulting in correct positioning of the new animal organ. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102880 biolink:NamedThing isobazzanene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> isobazzanene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8419 molecular_function owl:Class GO:0033940 biolink:NamedThing glucuronoarabinoxylan endo-1,4-beta-xylanase activity Catalysis of the endohydrolysis of (1->4)-beta-D-xylosyl links in some glucuronoarabinoxylans. tmpzr1t_l9r_go_relaxed.owl glucuronoarabinoxylan 1,4-beta-D-xylanohydrolase activity|feraxan endoxylanase activity|glucuronoxylan xylanohydrolase activity|endoarabinoxylanase activity|glucuronoxylanase activity|glucuronoxylan xylohydrolase activity|feraxanase activity MetaCyc:3.2.1.136-RXN|EC:3.2.1.136 molecular_function owl:Class GO:0035078 biolink:NamedThing induction of programmed cell death by ecdysone Any process induced by the steroid hormone 20-hydroxyecdysone (ecdysone) that directly activates any of the steps required for programmed cell death. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044586 biolink:NamedThing cellotetraose binding Binding to a cellotetraose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-24T04:56:10Z molecular_function owl:Class GO:0036270 biolink:NamedThing response to diuretic Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diuretic stimulus. A diuretic is an agent that promotes the excretion of urine through its effects on kidney function. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC. bf 2012-07-09T01:26:24Z biological_process owl:Class GO:0044605 biolink:NamedThing phosphocholine transferase activity Catalysis of the reaction: CDP-choline + protein-serine = CMP + protein-serine-choline phosphate. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-24T04:44:25Z molecular_function owl:Class GO:0140630 biolink:NamedThing all-trans-phytoene synthase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate -> all-trans-phytoene + 2 diphosphate. tmpzr1t_l9r_go_relaxed.owl phytoene synthase activity https://github.com/geneontology/go-ontology/issues/21165 pg 2021-03-25T18:04:01Z molecular_function owl:Class GO:0060209 biolink:NamedThing estrus The estrous cycle phase in which a female is sexually receptive. tmpzr1t_l9r_go_relaxed.owl oestrus Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0032182 biolink:NamedThing ubiquitin-like protein binding Binding to a small conjugating protein such as ubiquitin or a ubiquitin-like protein. tmpzr1t_l9r_go_relaxed.owl small conjugating protein binding molecular_function owl:Class GO:0050380 biolink:NamedThing undecaprenyl-diphosphatase activity Catalysis of the reaction: di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H+ + phosphate. tmpzr1t_l9r_go_relaxed.owl C55-isoprenyl diphosphatase activity|C(55)-isoprenyl pyrophosphatase activity|C(55)-isoprenyl diphosphatase activity|C55-isoprenyl pyrophosphatase activity|isoprenyl pyrophosphatase activity|undecaprenyl-diphosphate phosphohydrolase activity https://github.com/geneontology/go-ontology/issues/21789 KEGG_REACTION:R05627|MetaCyc:UNDECAPRENYL-DIPHOSPHATASE-RXN|RHEA:28094|EC:3.6.1.27 molecular_function owl:Class GO:0097449 biolink:NamedThing astrocyte projection A prolongation or process extending from the soma of an astrocyte and wrapping around neurons. tmpzr1t_l9r_go_relaxed.owl vellous process|peripheral astrocyte process|astrocyte process NIF_Subcellular:sao1630537580 pr 2012-12-17T13:29:55Z cellular_component owl:Class GO:0097391 biolink:NamedThing chemokine (C-X-C motif) ligand 13 production The appearance of chemokine (C-X-C motif) ligand 13 (CXCL13) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CXCL13 production pr 2012-10-23T07:58:28Z biological_process owl:Class GO:0051697 biolink:NamedThing protein delipidation The breakage of covalent bonds to detach lipid groups from a protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034794 biolink:NamedThing cyclopropanecarboxyl-CoA decyclase activity Catalysis of the reaction: cyclopropanecarboxyl-CoA = crotonoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1057|EC:5.5.1.- molecular_function owl:Class GO:1902791 biolink:NamedThing undecan-2-one biosynthetic process The chemical reactions and pathways resulting in the formation of undecan-2-one. tmpzr1t_l9r_go_relaxed.owl undecan-2-one anabolism|undecan-2-one biosynthesis|undecan-2-one formation|undecan-2-one synthesis tt 2014-03-22T02:13:07Z biological_process owl:Class GO:0008261 biolink:NamedThing allatostatin receptor activity Combining with allatostatin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902378 biolink:NamedThing VEGF-activated neuropilin signaling pathway involved in axon guidance Any VEGF-activated neuropilin signaling pathway that is involved in axon guidance. tmpzr1t_l9r_go_relaxed.owl VEGF-Npn-1 signaling involved in axon guidance|VEGF-activated neuropilin signaling pathway involved in axon pathfinding|VEGF-Npn-1 signaling involved in axon pathfinding|vascular endothelial growth factor-activated neuropilin signaling pathway involved in axon guidance|vascular endothelial growth factor-activated neuropilin signaling pathway involved in axon growth cone guidance|VEGF-activated neuropilin signaling pathway involved in axon chemotaxis|vascular endothelial growth factor-activated neuropilin signaling pathway involved in axon chemotaxis|vascular endothelial growth factor-activated neuropilin signaling pathway involved in axon pathfinding|VEGF-Npn-1 signaling involved in axon growth cone guidance|VEGF-activated neuropilin signaling pathway involved in axon growth cone guidance|VEGF-Npn-1 signaling involved in axon chemotaxis bf 2013-09-02T13:44:13Z biological_process owl:Class GO:0033912 biolink:NamedThing 2,6-beta-fructan 6-levanbiohydrolase activity Catalysis of the hydrolysis of (2->6)-beta-D-fructofuranan, to remove successive disaccharide residues as levanbiose, i.e. 6-(beta-D-fructofuranosyl)-D-fructose, from the end of the chain. tmpzr1t_l9r_go_relaxed.owl 2,6-beta-D-fructofuranan 6-(beta-D-fructosyl)-D-fructose-hydrolase activity|beta-2,6-fructan-6-levanbiohydrolase activity|2,6-beta-D-fructan 6-beta-D-fructofuranosylfructohydrolase activity|2,6-beta-D-fructan 6-levanbiohydrolase activity|levanbiose-producing levanase activity MetaCyc:3.2.1.64-RXN|EC:3.2.1.64 molecular_function owl:Class GO:1901906 biolink:NamedThing diadenosine pentaphosphate metabolic process The chemical reactions and pathways involving diadenosine pentaphosphate. tmpzr1t_l9r_go_relaxed.owl diadenosine pentaphosphate metabolism|diadenosyl pentaphosphate metabolism|diadenosyl pentaphosphate metabolic process al 2013-02-13T13:48:16Z biological_process owl:Class GO:0097143 biolink:NamedThing PUMA-BCL-xl complex A heterodimeric protein complex consisting of PUMA and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:44:10Z cellular_component owl:Class GO:0005714 biolink:NamedThing early recombination nodule An electron dense structure that is associated with meiotic chromosomes in leptotene or zygotene during meiosis I. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0032050 biolink:NamedThing clathrin heavy chain binding Binding to a clathrin heavy chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031681 biolink:NamedThing G-protein beta-subunit binding Binding to a G-protein beta subunit. tmpzr1t_l9r_go_relaxed.owl G-beta protein subunit binding molecular_function owl:Class GO:0090511 biolink:NamedThing periclinal cell division A cell division process where the division plane is parallel to the surface of the organ. It creates a new cell layer or cell file. tmpzr1t_l9r_go_relaxed.owl tb 2012-11-21T11:52:40Z biological_process owl:Class GO:0030620 biolink:NamedThing U2 snRNA binding Binding to a U2 small nuclear RNA (U2 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0007429 biolink:NamedThing secondary branching, open tracheal system Sprouting of secondary branches in an open tracheal system. These form from the tips of primary branches and are formed by individual cells that roll up into unicellular tubes. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl secondary tracheal branching biological_process owl:Class GO:0099057 biolink:NamedThing integral component of presynaptic endocytic zone membrane The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990597 biolink:NamedThing AIP1-IRE1 complex A protein complex consisting of IRE1 (inositol-requiring enzyme-1) bound to AIP1 (ASK1-interacting protein 1/DAB2-interacting protein). tmpzr1t_l9r_go_relaxed.owl IRE1-DAB2IP complex|AIP1-ERN1 complex|IRE1alpha-AIP1 complex bf 2015-01-05T15:14:35Z cellular_component owl:Class GO:0102998 biolink:NamedThing 4-sulfomuconolactone hydrolase activity Catalysis of the reaction: (5-oxo-2-sulfonato-2,5-dihydrofuran-2-yl)acetate + H2O <=> maleylacetate + sulfite + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.92|RHEA:33711|MetaCyc:RXN-9733 molecular_function owl:Class GO:0035401 biolink:NamedThing histone kinase activity (H3-Y41 specific) Catalysis of the transfer of a phosphate group to the tyrosine-41 residue of histone H3. tmpzr1t_l9r_go_relaxed.owl histone tyrosine kinase activity (H3-Y41 specific)|histone-tyrosine kinase activity (H3-Y41 specific) bf 2010-03-24T10:01:14Z molecular_function owl:Class GO:0005173 biolink:NamedThing stem cell factor receptor binding Binding to a stem cell factor receptor (SCFR), a type III transmembrane kinase receptor. tmpzr1t_l9r_go_relaxed.owl stem cell factor|KIT binding|SCF|SCFR binding|stem cell factor receptor ligand molecular_function owl:Class GO:0034864 biolink:NamedThing 2,4,4-trimethylpentanal dehydrogenase activity Catalysis of the reaction: 2,4,4-trimethylpentanal + H2O = 2,4,4-trimethylpentanoate + 3 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1275 molecular_function owl:Class GO:0010130 biolink:NamedThing anaerobic ethylbenzene catabolic process The chemical reactions and pathways resulting in the breakdown of ethylbenzene, a benzene derivative with an ethyl group attached to the ring, which occurs in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic ethylbenzene degradation|anaerobic ethylbenzene catabolism|anaerobic ethylbenzene breakdown MetaCyc:PWY-481 biological_process owl:Class GO:0018913 biolink:NamedThing anaerobic ethylbenzene metabolic process The chemical reactions and pathways involving ethylbenzene (phenylethane), a benzene derivative with an ethyl group attached to the ring, that occur in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic ethylbenzene metabolism UM-BBD_pathwayID:ethb biological_process owl:Class GO:0033998 biolink:NamedThing inulin fructotransferase (DFA-III-forming) activity Catalysis of the reaction: [(2->1)-beta-D-fructosyl](n) = [(2->1)-beta-D-fructosyl](n-1) + alpha-D-fructofuranose beta-D-fructofuranose 1,2':2,3'-dianhydride. This reaction is the production of alpha-D-fructofuranose beta-D-fructofuranose 1,2':2,3'-dianhydride (DFA III) by successively eliminating the diminishing (2->1)-beta-D-fructan (inulin) chain from the terminal D-fructosyl-D-fructosyl disaccharide. tmpzr1t_l9r_go_relaxed.owl inulinase II activity|inulin D-fructosyl-D-fructosyltransferase (1,2':2,3'-dianhydride-forming) activity|inulin D-fructosyl-D-fructosyltransferase (forming alpha-D-fructofuranose beta-D-fructofuranose 1,2':2,3'-dianhydride) activity|inulin fructotransferase (depolymerizing) activity|inulase II activity|inulin fructotransferase (depolymerizing, difructofuranose-1,2':2,3'-dianhydride-forming) activity|2,1-beta-D-fructan lyase (alpha-D-fructofuranose-beta-D-fructofuranose-1,2':2,3'-dianhydride-forming) activity|inulin fructotransferase (DFA-III-producing) activity EC:4.2.2.18|MetaCyc:4.2.2.18-RXN molecular_function owl:Class GO:0047450 biolink:NamedThing crotonoyl-[acyl-carrier-protein] hydratase activity Catalysis of the reaction: (3R)-3-hydroxybutanoyl-[acyl-carrier protein] = H2O + but-2-enoyl-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl (3R)-3-hydroxybutanoyl-acyl-carrier-protein hydro-lyase (but-2-enoyl-acyl-carrier protein-forming)|crotonoyl-ACP hydratase activity|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase activity|enoyl acyl carrier protein hydrase activity|3-hydroxybutyryl acyl carrier protein dehydratase activity|crotonyl acyl carrier protein hydratase activity|(3R)-3-hydroxybutanoyl-acyl-carrier-protein hydro-lyase activity|beta-hydroxybutyryl acyl carrier protein dehydrase activity|crotonoyl-[acyl-carrier protein] hydratase activity|crotonoyl-acyl-carrier-protein hydratase activity|beta-hydroxybutyryl acyl carrier protein (ACP) dehydrase activity KEGG_REACTION:R04428|EC:4.2.1.58|MetaCyc:4.2.1.58-RXN GO:0080063 molecular_function owl:Class GO:1990068 biolink:NamedThing seed dehydration The seed development process whose outcome is the drying of a maturing seed. tmpzr1t_l9r_go_relaxed.owl tb 2013-03-27T21:16:03Z biological_process owl:Class GO:1901629 biolink:NamedThing regulation of presynaptic membrane organization Any process that modulates the frequency, rate or extent of presynaptic membrane organization. tmpzr1t_l9r_go_relaxed.owl regulation of pre-synaptic membrane organization|regulation of presynaptic membrane organisation ans 2012-11-15T11:40:32Z biological_process owl:Class GO:0097248 biolink:NamedThing maintenance of protein location in cell cortex of cell tip A process in which a protein or protein complex is maintained in a specific location in the cell cortex of a cell tip, and is prevented from moving elsewhere. The cell cortex of a cell tip is the region directly beneath the plasma membrane at either end of the longest axis of a cylindrical or elongated cell. tmpzr1t_l9r_go_relaxed.owl pr 2012-02-20T04:27:31Z biological_process owl:Class GO:0031868 biolink:NamedThing prostaglandin F2-alpha receptor binding Binding to a prostaglandin F2-alpha receptor. tmpzr1t_l9r_go_relaxed.owl prostaglandin F2-alpha receptor ligand|prostanoid FP receptor binding molecular_function owl:Class GO:0004579 biolink:NamedThing dolichyl-diphosphooligosaccharide-protein glycotransferase activity Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine. tmpzr1t_l9r_go_relaxed.owl dolichyldiphosphoryloligosaccharide-protein oligosaccharyltransferase activity|dolichyldiphosphooligosaccharide-protein glycosyltransferase activity|dolichyl-diphosphooligosaccharide:protein-L-asparagine oligopolysaccharidotransferase activity|oligomannosyltransferase activity|dolichylpyrophosphodiacetylchitobiose-protein glycosyltransferase activity|asparagine N-glycosyltransferase activity|dolichyl-diphosphooligosaccharide-protein glycosyltransferase activity|dolichyldiphosphooligosaccharide-protein oligosaccharyltransferase activity Reactome:R-HSA-9694793|Reactome:R-HSA-446209|RHEA:22980|MetaCyc:2.4.1.119-RXN|EC:2.4.99.18 molecular_function owl:Class GO:0004576 biolink:NamedThing oligosaccharyl transferase activity Catalysis of the transfer of a oligosaccharyl group to an acceptor molecule, typically another carbohydrate or a lipid. tmpzr1t_l9r_go_relaxed.owl oligosaccharide transferase activity molecular_function owl:Class GO:0102336 biolink:NamedThing 3-oxo-arachidoyl-CoA synthase activity Catalysis of the reaction: stearoyl-CoA(4-) + malonyl-CoA(5-) + H+ <=> 3-oxoicosanoyl-CoA. + carbon dioxide + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13294|RHEA:35319 molecular_function owl:Class GO:0039501 biolink:NamedThing suppression by virus of host type I interferon production Any viral process that results in the inhibition of host cell type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host type I IFN production|suppression by virus of host interferon type I production|negative regulation by virus of host type I interferon production VZ:875 bf 2011-05-11T03:53:20Z biological_process owl:Class GO:0018487 biolink:NamedThing vanillate O-demethylase (anaerobic) activity Catalysis of the reaction: vanillate + Co+ = Co3+-CH3 + 3,4-dihydroxybenzoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0758 molecular_function owl:Class GO:0032136 biolink:NamedThing adenine/cytosine mispair binding Binding to a double-stranded DNA region containing an A/C mispair. tmpzr1t_l9r_go_relaxed.owl A/C mispair binding|C/A mispair binding|cytosine/adenine mispair binding molecular_function owl:Class GO:0032978 biolink:NamedThing protein insertion into membrane from inner side The process in which a protein is incorporated into a lipid bilayer, e.g., the prokaryotic, mitochondrial, or chloroplast inner membrane, from the inner side. tmpzr1t_l9r_go_relaxed.owl insertion of proteins into membrane from the inner side biological_process owl:Class GO:0044647 biolink:NamedThing host-symbiont bicellular tight junction An occluding cell-cell junction formed between the membranes of the apical end of an invading cell (e.g. a merozoite in Plasmodium) and a host target cell (e.g. erythrocyte for Plasmodium infection). The junction is a stable yet dynamic structure that moves around the symbiont cell during invasion, enclosing it in a vacuole surrounded by a membrane. tmpzr1t_l9r_go_relaxed.owl host-parasite tight junction|host-pathogen tight junction jl 2012-07-11T12:56:18Z cellular_component owl:Class GO:0102155 biolink:NamedThing S-sulfolactate dehydrogenase activity Catalysis of the reaction: (S)-3-sulfonatolactate + NAD <=> 3-sulfonatopyruvate(2-) + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:28194|EC:1.1.1.310|MetaCyc:RXN-11689 molecular_function owl:Class GO:0000838 biolink:NamedThing Hrd1p ubiquitin ligase ERAD-M complex A multiprotein complex that recognizes and ubiquitinates proteins with misfolded membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071762 biolink:NamedThing heavy chain immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgNAR isotype held together by disulfide bonds and lacking immunoglobulin light chains. tmpzr1t_l9r_go_relaxed.owl IgNAR immunoglobulin complex|HCab|Ig NAR immunoglobulin complex|IgNAR antibody Note that a heavy chain immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Note that IgNAR is found in serum of cartilaginous fish as a heavy chain dimer without immunoglobulin light chains. Note that HCab is found in camels as a heavy chain dimer without immunoglobulin light chains. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0052622 biolink:NamedThing ATP dimethylallyltransferase activity Catalysis of the reaction: delta(2)-isopentenyl diphosphate + ATP = diphosphate + N6-(delta(2)-isopentenyl)adenosine 5'-triphosphate. tmpzr1t_l9r_go_relaxed.owl ATP isopentenyltransferase activity|dimethylallyl-diphosphate:ATP dimethylallyltransferase activity|2-isopentenyl-diphosphate:ATP 2-isopentenyltransferase activity|2-isopentenyl-diphosphate:ATP delta2-isopentenyltransferase activity EC:2.5.1.-|MetaCyc:RXN-4303|KEGG_REACTION:R08052 ai 2010-08-26T10:45:38Z molecular_function owl:Class GO:0005150 biolink:NamedThing interleukin-1, type I receptor binding Binding to a Type I interleukin-1 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-1, type I receptor ligand|IL-1 type I molecular_function owl:Class GO:0070097 biolink:NamedThing delta-catenin binding Binding to the delta subunit of the catenin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030280 biolink:NamedThing structural constituent of skin epidermis The action of a molecule that contributes to the structural integrity of an epidermal cutaneous structure. tmpzr1t_l9r_go_relaxed.owl structural constituent of epidermis molecular_function owl:Class GO:1990753 biolink:NamedThing equatorial cell cortex The region of the cell cortex in a mitotically dividing cell that flanks the central spindle and corresponds to the site of actomyosin ring formation that results in cleavage furrow formation and ingression. tmpzr1t_l9r_go_relaxed.owl kmv 2015-05-27T19:12:41Z cellular_component owl:Class GO:0047036 biolink:NamedThing codeinone reductase (NADPH) activity Catalysis of the reaction: codeine + NADP(+) = codeinone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl codeine:NADP+ oxidoreductase activity RHEA:19209|KEGG_REACTION:R05124|MetaCyc:1.1.1.247-RXN|EC:1.1.1.247 molecular_function owl:Class GO:0000484 biolink:NamedThing cleavage between SSU-rRNA and 5.8S rRNA of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018856 biolink:NamedThing benzoyl acetate-CoA ligase activity Catalysis of the reaction: 3-oxo-3-phenylpropionate + CoA + ATP = AMP + diphosphate + benzoyl acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0242|SABIO-RK:5058|KEGG_REACTION:R05452 molecular_function owl:Class GO:0047303 biolink:NamedThing glycine-oxaloacetate transaminase activity Catalysis of the reaction: glycine + oxaloacetate = L-aspartate + glyoxylate. tmpzr1t_l9r_go_relaxed.owl glycine-oxaloacetate aminotransferase activity|glycine-oxalacetate aminotransferase activity|glycine--oxaloacetate aminotransferase activity|glycine:oxaloacetate aminotransferase activity MetaCyc:2.6.1.35-RXN|KEGG_REACTION:R00373|EC:2.6.1.35|RHEA:17141 molecular_function owl:Class GO:0102063 biolink:NamedThing beta-curcumene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> diphosphoric acid + (-)-beta-curcumene. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10598 molecular_function owl:Class GO:0004492 biolink:NamedThing methylmalonyl-CoA decarboxylase activity Catalysis of the reaction: (S)-2-methyl-3-oxopropanoyl-CoA = propanoyl-CoA + CO2. tmpzr1t_l9r_go_relaxed.owl methylmalonyl-coenzyme A decarboxylase activity|(S)-2-methyl-3-oxopropanoyl-CoA carboxy-lyase activity|(S)-methylmalonyl-CoA carboxy-lyase (propanoyl-CoA-forming)|(S)-methylmalonyl-CoA carboxy-lyase activity EC:7.2.4.3|MetaCyc:METHYLMALONYL-COA-DECARBOXYLASE-RXN|RHEA:21396 molecular_function owl:Class GO:0102272 biolink:NamedThing homophytochelatin synthase activity (polymer-forming) Catalysis of the reaction: glutathionate + a poly gamma-glutamylcysteine-beta-alanine = glycine + a poly gamma-glutamylcysteine-beta-alanine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12528 molecular_function owl:Class GO:0019155 biolink:NamedThing 3-(imidazol-5-yl)lactate dehydrogenase activity Catalysis of the reaction: (S)-3-(imidazol-5-yl)lactate + NADP+ = 3-(imidazol-5-yl)pyruvate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl (S)-3-(imidazol-5-yl)lactate:NAD(P)+ oxidoreductase activity|imidazol-5-yl lactate dehydrogenase activity MetaCyc:IMILACTDEHYDROG-RXN|EC:1.1.1.111 molecular_function owl:Class GO:0062124 biolink:NamedThing 4-hydroxybutyrate receptor activity Combining with 4-hydroxybutyrte to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl gamma-hydroxybutyrate receptor activity dph 2019-05-15T12:22:38Z molecular_function owl:Class GO:0010438 biolink:NamedThing cellular response to sulfur starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfur. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032545 biolink:NamedThing CURI complex A protein complex that is involved in the transcription of ribosomal genes. In Saccharomyces this complex consists of Ckb2p, Utp22p, Rrp7p and Ifh1p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000092 biolink:NamedThing mitotic anaphase B The cell cycle phase during which the polar microtubules elongate and the two poles of the spindle move farther apart as part of mitosis. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0043717 biolink:NamedThing 2-hydroxyglutaryl-CoA dehydratase activity Catalysis of the reaction: (R)-2-hydroxyglutaryl-CoA = H2O + glutaconyl-CoA. tmpzr1t_l9r_go_relaxed.owl (R)-2-hydroxyglutaryl-CoA dehydratase activity MetaCyc:RXN-1083|RHEA:42448 molecular_function owl:Class GO:0033906 biolink:NamedThing hyaluronoglucuronidase activity Catalysis of the random hydrolysis of 1,3-linkages between beta-D-glucuronate and N-acetyl-D-glucosamine residues in hyaluronate. tmpzr1t_l9r_go_relaxed.owl hyaluronidase activity|orgelase activity|glucuronoglucosaminoglycan hyaluronate lyase activity|hyaluronate 3-glycanohydrolase activity MetaCyc:3.2.1.36-RXN|EC:3.2.1.36 molecular_function owl:Class GO:1905599 biolink:NamedThing positive regulation of low-density lipoprotein receptor activity Any process that activates or increases the frequency, rate or extent of low-density lipoprotein receptor activity. tmpzr1t_l9r_go_relaxed.owl up regulation of LDL receptor|up regulation of low-density lipoprotein receptor activity|upregulation of LDL receptor|up-regulation of LDL receptor|up regulation of LDLR activity|positive regulation of LDLR activity|activation of LDLR activity|activation of low-density lipoprotein receptor activity|activation of LDL receptor|up-regulation of low-density lipoprotein receptor activity|upregulation of LDLR activity|positive regulation of LDL receptor|up-regulation of LDLR activity|upregulation of low-density lipoprotein receptor activity nc 2016-10-26T11:53:41Z biological_process owl:Class GO:0033984 biolink:NamedThing indole-3-glycerol-phosphate lyase activity Catalysis of the reaction: (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = indole + D-glyceraldehyde 3-phosphate. tmpzr1t_l9r_go_relaxed.owl indole synthase activity|tryptophan synthase alpha subunit activity|IGL|indoleglycerolphosphate aldolase activity|(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase activity|BX1|indole-3-glycerolphosphate D-glyceraldehyde-3-phosphate-lyase activity|indole glycerol phosphate hydrolase activity|(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase (indole-forming) activity|tryptophan synthase alpha activity|indole-3-glycerol phosphate lyase activity|TSA MetaCyc:RXN0-2381|RHEA:14081|MetaCyc:4.1.2.8-RXN|KEGG_REACTION:R02340|EC:4.1.2.8 molecular_function owl:Class GO:0097323 biolink:NamedThing B cell adhesion The attachment of a B cell to another cell via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-06T01:59:19Z biological_process owl:Class GO:0047111 biolink:NamedThing formate dehydrogenase (cytochrome-c-553) activity Catalysis of the reaction: ferricytochrome C-553 + formate = ferrocytochrome C-553 + CO2. tmpzr1t_l9r_go_relaxed.owl formate dehydrogenase (cytochrome c-553)|formate:ferricytochrome-c-553 oxidoreductase activity MetaCyc:1.2.2.3-RXN|EC:1.17.2.3|RHEA:15189 molecular_function owl:Class GO:0019174 biolink:NamedThing tetrahydrothiophene 1-oxide reductase activity Catalysis of the reaction: tetrahydrothiophene 1-oxide + reduced acceptor = tetrahydrothiophene + acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:THTOREDUCT-RXN molecular_function owl:Class GO:0003411 biolink:NamedThing cell motility involved in camera-type eye morphogenesis Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another and contributes to the physical shaping or formation of the camera-type eye. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-21T03:04:27Z biological_process owl:Class GO:1903040 biolink:NamedThing exon-exon junction complex assembly The aggregation, arrangement and bonding together of a set of components to form an exon-exon junction complex. tmpzr1t_l9r_go_relaxed.owl EJC assembly|EJC formation|exon-exon junction complex formation sart 2014-05-20T14:52:07Z biological_process owl:Class GO:0042568 biolink:NamedThing insulin-like growth factor binary complex A complex of two proteins, which in animals is 50kDa and consists of the insulin-like growth factor (IGF) and one of the insulin-like growth factor binding protein-1 (IGFBP-1), -2 (IGFBP-2), -4 (IGFBP-4) and -6 (IGFBP-6). The complex plays a role in growth and development. tmpzr1t_l9r_go_relaxed.owl IGF binary complex cellular_component owl:Class GO:0120067 biolink:NamedThing pyloric sphincter smooth muscle contraction A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the narrowest part of the pylorus that separates the stomach from the duodenum. tmpzr1t_l9r_go_relaxed.owl krc 2017-06-13T22:38:26Z biological_process owl:Class GO:0102449 biolink:NamedThing kaempferol 3-O-methyltransferase activity Catalysis of the reaction: kaempferol oxoanion + S-adenosyl-L-methionine <=> 3-O-methylkaempferol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13935 molecular_function owl:Class GO:0044305 biolink:NamedThing calyx of Held The terminal specialization of a calyciferous axon which forms large synapses in the mammalian auditory central nervous system. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao1684283879 jl 2010-02-05T02:33:20Z cellular_component owl:Class GO:1903951 biolink:NamedThing positive regulation of AV node cell action potential Any process that activates or increases the frequency, rate or extent of AV node cell action potential. tmpzr1t_l9r_go_relaxed.owl activation of AV node cardiac muscle cell action potential|activation of AV node cell action potential|upregulation of AV node cell action potential|activation of atrioventricular node cardiac muscle cell action potential|up-regulation of AV node cardiac muscle cell action potential|up regulation of AV node cardiac muscle cell action potential|positive regulation of atrioventricular node cardiac muscle cell action potential|up regulation of atrioventricular node cardiac muscle cell action potential|up-regulation of AV node cell action potential|upregulation of atrioventricular node cardiac muscle cell action potential|up-regulation of atrioventricular node cardiac muscle cell action potential|up regulation of AV node cell action potential|positive regulation of AV node cardiac muscle cell action potential|upregulation of AV node cardiac muscle cell action potential nc 2015-02-20T14:59:50Z biological_process owl:Class GO:0099642 biolink:NamedThing retrograde axonal protein transport The directed movement of proteins along microtubules from the cell periphery toward the cell body in nerve cell axons. tmpzr1t_l9r_go_relaxed.owl retrograde axon cargo transport biological_process owl:Class GO:0047688 biolink:NamedThing aspartate 4-decarboxylase activity Catalysis of the reaction: L-aspartate = L-alanine + CO2. tmpzr1t_l9r_go_relaxed.owl L-aspartate 4-carboxy-lyase activity|aspartate omega-decarboxylase activity|L-aspartate 4-carboxy-lyase (L-alanine-forming)|aminomalonic decarboxylase activity|aspartate beta-decarboxylase activity|desulfinase activity|cysteine sulfinic desulfinase activity|L-cysteine sulfinate acid desulfinase activity|aspartic beta-decarboxylase activity|aspartic omega-decarboxylase activity|L-aspartate beta-decarboxylase activity MetaCyc:ASPARTATE-4-DECARBOXYLASE-RXN|RHEA:12621|EC:4.1.1.12 molecular_function owl:Class GO:0008744 biolink:NamedThing L-xylulokinase activity Catalysis of the reaction: ATP + L-xylulose = ADP + L-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-xylulose kinase activity|ATP:L-xylulose 5-phosphotransferase activity|L-xylulokinase (phosphorylating) EC:2.7.1.53|RHEA:18869|MetaCyc:LYXK-RXN molecular_function owl:Class GO:0008810 biolink:NamedThing cellulase activity Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl endoglucanase activity|celluase A|beta-1,4-glucanase activity|cellulase A 3|beta-1,4-endoglucan hydrolase activity|endoglucanase D|carboxymethyl cellulase activity|cellulosin AP|endo-1,4-beta-D-glucanohydrolase activity|endo-1,4-beta-D-glucanase activity|endo-1,4-beta-glucanase activity|alkali cellulase activity|9.5 cellulase activity|1,4-(1,3;1,4)-beta-D-glucan 4-glucanohydrolase activity|celludextrinase activity|avicelase activity|pancellase SS MetaCyc:RXN-2043|EC:3.2.1.4 molecular_function owl:Class GO:0004076 biolink:NamedThing biotin synthase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + dethiobiotin + S(2-) = 2 5'-deoxyadenosine + 2 L-methionine + biotin + H(+). tmpzr1t_l9r_go_relaxed.owl dethiobiotin:sulfur sulfurtransferase activity|biotin synthetase activity EC:2.8.1.6|KEGG_REACTION:R01078|MetaCyc:2.8.1.6-RXN|RHEA:22060 molecular_function owl:Class GO:0071104 biolink:NamedThing response to interleukin-9 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-9 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-9 mah 2009-11-09T12:50:25Z biological_process owl:Class GO:0160005 biolink:NamedThing PAT complex A transmembrane protein complex located in the endoplasmic reticulum (ER) involved in the correct folding of multipass membrane proteins in the ER membrane after their release from the Sec61 translocon. In human, the substrate-binding Asterix (PAT10, WDR83OS) forms an obligate heterodimer with CCDC47. tmpzr1t_l9r_go_relaxed.owl PAT complex functions by shielding exposed hydrophilicity of transmembrane domains (TMDs) to prevent premature degradation and promote proper folding and bundling of TMDs. rynl 2021-09-03T23:12:58Z cellular_component owl:Class GO:0018558 biolink:NamedThing 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline dioxygenase activity Catalysis of the reaction: 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline + O2 = 3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0049|EC:1.13.11.- molecular_function owl:Class GO:0140696 biolink:NamedThing (S)-2-hydroxyglutarate dehydrogenase activity Catalysis of the reaction: (S)-2-hydroxyglutarate + a quinone = 2-oxoglutarate + a quinol. tmpzr1t_l9r_go_relaxed.owl L-2-hydroxyglutarate dehydrogenase activity https://github.com/geneontology/go-ontology/issues/21957 RHEA:58664|EC:1.1.5.13 pg 2021-08-11T14:16:32Z molecular_function owl:Class GO:0102837 biolink:NamedThing 1-18:2-2-16:1-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8297|EC:1.14.19.35 molecular_function owl:Class GO:0018545 biolink:NamedThing NAD(P)H nitroreductase activity Catalysis of the conversion of a nitrate group to an amino or hydroxylamino group on toluene or a toluene derivative. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0346 molecular_function owl:Class GO:0034200 biolink:NamedThing D,D-heptose 1,7-bisphosphate phosphatase activity Catalysis of the reaction: D-beta-D-heptose 1,7-bisphosphate + H2O = D-beta-D-heptose 1-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28518|MetaCyc:RXN0-4361 molecular_function owl:Class GO:0036445 biolink:NamedThing neuronal stem cell division The self-renewing division of a neuronal stem cell. tmpzr1t_l9r_go_relaxed.owl NSC division bf 2013-10-30T10:03:27Z biological_process owl:Class GO:0004411 biolink:NamedThing homogentisate 1,2-dioxygenase activity Catalysis of the reaction: homogentisate + O(2) = 4-maleylacetoacetate + H(+). tmpzr1t_l9r_go_relaxed.owl homogentisate oxygenase activity|homogentisate dioxygenase activity|homogentisic acid oxygenase activity|homogentisate:oxygen 1,2-oxidoreductase (decyclizing)|homogentisic acid oxidase activity|homogentisate oxidase activity|homogentisicase activity|homogentisic oxygenase activity RHEA:15449|MetaCyc:HOMOGENTISATE-12-DIOXYGENASE-RXN|Reactome:R-HSA-71164|KEGG_REACTION:R02519|EC:1.13.11.5|UM-BBD_reactionID:r0105 molecular_function owl:Class GO:0004501 biolink:NamedThing ecdysone 20-monooxygenase activity Catalysis of the reaction: AH(2) + Ecdysone + O(2) = 20-hydroxyecdysone + A + H(2)O. tmpzr1t_l9r_go_relaxed.owl ecdysone 20-hydroxylase activity|ecdysone,hydrogen-donor:oxygen oxidoreductase (20-hydroxylating)|ecdysone modification|alpha-ecdysone C-20 hydroxylase activity EC:1.14.99.22|KEGG_REACTION:R02374|RHEA:14021|MetaCyc:ECDYSONE-20-MONOOXYGENASE-RXN molecular_function owl:Class GO:0018559 biolink:NamedThing 1,1-dichloro-2-(dihydroxy-4-chlorophenyl)-(4-chlorophenyl)ethene 1,2-dioxygenase activity Catalysis of the reaction: 1,1-dichloro-2-(dihydroxy-4'-chorophenyl)-2-(4-chlorophenyl)ethene + O2 = 6-oxo-2-hydroxy-7-(4-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate. tmpzr1t_l9r_go_relaxed.owl 1,1-dichloro-2-(dihydroxy-4-chlorophenyl)-(4-chlorophenyl)ethylene 1,2-dioxygenase activity UM-BBD_reactionID:r0442|EC:1.13.11.- molecular_function owl:Class GO:0070653 biolink:NamedThing high-density lipoprotein particle receptor binding Binding to a high-density lipoprotein receptor. tmpzr1t_l9r_go_relaxed.owl high-density lipoprotein receptor binding|HDL receptor binding mah 2009-05-28T03:44:33Z molecular_function owl:Class GO:0009040 biolink:NamedThing ureidoglycolate dehydrogenase activity Catalysis of the reaction: (S)-ureidoglycolate + NAD(P)+ = oxalureate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl (S)-ureidoglycolate:NAD(P)+ oxidoreductase activity EC:1.1.1.154|MetaCyc:R165-RXN molecular_function owl:Class GO:0062121 biolink:NamedThing linear element maturation The meiotic cell cycle chromosome organization process in which LinE complexes closely associate with chromatin during meiotic prophase to form mature linear elements. tmpzr1t_l9r_go_relaxed.owl LinE focus formation|LinE chromosome loading dph 2019-03-19T14:19:27Z biological_process owl:Class GO:0098788 biolink:NamedThing dendritic knob The terminal swelling of an apical dendrite of a ciliated olfactory receptor neuron. Each knob gives rise to 5 to 20 long delicate nonmotile cilia, which extend into the mucus covering the sensory epithelium. tmpzr1t_l9r_go_relaxed.owl apical dendritic knob cellular_component owl:Class GO:0005047 biolink:NamedThing signal recognition particle binding Binding to a signal recognition particle. tmpzr1t_l9r_go_relaxed.owl signal recognition particle receptor|docking protein See also the cellular component term 'signal recognition particle, endoplasmic reticulum targeting ; GO:0005786'. molecular_function owl:Class GO:0090447 biolink:NamedThing glycerol-3-phosphate 2-O-acyltransferase activity Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl tb 2012-08-31T09:23:12Z molecular_function owl:Class GO:0047515 biolink:NamedThing 1,3-beta-oligoglucan phosphorylase activity Catalysis of the reaction: [oligomeric (1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl 1,3-beta-D-oligoglucan:phosphate alpha-D-glucosyltransferase activity|beta-1,3-oligoglucan:orthophosphate glucosyltransferase II activity|beta-1,3-oligoglucan phosphorylase activity MetaCyc:13-BETA-OLIGOGLUCAN-PHOSPHORYLASE-RXN|EC:2.4.1.30|RHEA:16041 molecular_function owl:Class GO:0099053 biolink:NamedThing activating signal cointegrator 1 complex A protein complex that contains TRIP4 (ASC1) and acts a transcriptional coactivator by interacting with transcription factors such as NF-kappa B. In humans this complex has 4 subunits: TRIP4 + ASCC1-3. tmpzr1t_l9r_go_relaxed.owl ASC-1 complex cellular_component owl:Class GO:0103068 biolink:NamedThing leukotriene C4 gamma-glutamyl transferase activity Catalysis of the reaction: leukotriene C4 + a standard alpha amino acid = leukotriene D4 + an (gamma-L-glutamyl)-L-amino acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN66-336|EC:2.3.2.2 molecular_function owl:Class GO:0090473 biolink:NamedThing lys-arg specific dibasic protein processing Any protein processing achieved by the cleavage of a peptide bond after a lysine-arginine amino acid residue combination within a protein. tmpzr1t_l9r_go_relaxed.owl tb 2012-10-01T10:42:30Z biological_process owl:Class GO:0090409 biolink:NamedThing malonyl-CoA synthetase activity Catalysis of the reaction: malonate + ATP + coenzyme A = malonyl-CoA + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12359|RHEA:32139|EC:6.2.1.n3 tb 2011-06-10T01:51:16Z molecular_function owl:Class GO:0120299 biolink:NamedThing peptide histaminyltransferase activity Catalysis of the reaction: histamine + L-glutaminyl-[protein] = 5-histaminyl-L-glutamyl-[protein]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20685 RHEA:66564 krc 2021-01-19T03:23:48Z molecular_function owl:Class GO:0009660 biolink:NamedThing amyloplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an amyloplast. An amyloplast is a plastid whose main function is to synthesize and store starch. tmpzr1t_l9r_go_relaxed.owl amyloplast organisation|amyloplast organization and biogenesis biological_process owl:Class GO:0050200 biolink:NamedThing plasmalogen synthase activity Catalysis of the reaction: acyl-CoA + 1-O-alk-1-enyl-glycero-3-phosphocholine = CoA + plasmenylcholine. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:1-O-alk-1-enyl-glycero-3-phosphocholine 2-O-acyltransferase activity|lysoplasmenylcholine acyltransferase activity|O-1-alkenylglycero-3-phosphorylcholine acyltransferase activity|1-alkenyl-glycero-3-phosphorylcholine:acyl-CoA acyltransferase activity EC:2.3.1.25|MetaCyc:PLASMALOGEN-SYNTHASE-RXN molecular_function owl:Class GO:0102953 biolink:NamedThing hypoglycin A gamma-glutamyl transpeptidase activity Catalysis of the reaction: glutathionate + hypoglycin A = L-cysteinylglycine + hypoglycin B. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9157|EC:2.3.2.2 molecular_function owl:Class GO:0060184 biolink:NamedThing cell cycle switching The process in which a cell switches cell cycle mode. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008281 biolink:NamedThing sulfonylurea receptor activity Combining with sulfonylurea, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl sulphonylurea receptor activity Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'potassium channel activity ; GO:0005267'. molecular_function owl:Class GO:0050122 biolink:NamedThing N-acylhexosamine oxidase activity Catalysis of the reaction: N-acetyl-D-glucosamine + H(2)O + O(2) = N-acetyl-D-glucosaminate + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl N-acyl-D-hexosamine oxidase activity|N-acyl-D-hexosamine:oxygen 1-oxidoreductase activity|N-acyl-beta-D-hexosamine:oxygen 1-oxidoreductase activity KEGG_REACTION:R01203|RHEA:13029|EC:1.1.3.29|MetaCyc:N-ACYLHEXOSAMINE-OXIDASE-RXN molecular_function owl:Class GO:0031994 biolink:NamedThing insulin-like growth factor I binding Binding to insulin-like growth factor I. tmpzr1t_l9r_go_relaxed.owl IGF-I binding molecular_function owl:Class GO:0061837 biolink:NamedThing neuropeptide processing Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a neuropeptide precursor. Processing leads to the attainment of the full functional capacity of the neuropeptide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1900080 biolink:NamedThing positive regulation of arginine biosynthetic process Any process that activates or increases the frequency, rate or extent of arginine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl upregulation of arginine formation|activation of arginine formation|activation of arginine biosynthetic process|up-regulation of arginine anabolism|upregulation of arginine biosynthesis|upregulation of arginine synthesis|activation of arginine anabolism|up regulation of arginine biosynthesis|up-regulation of arginine synthesis|up regulation of arginine anabolism|up regulation of arginine synthesis|up-regulation of arginine biosynthesis|positive regulation of arginine formation|positive regulation of arginine anabolism|positive regulation of arginine biosynthesis|positive regulation of arginine synthesis|activation of arginine biosynthesis|up regulation of arginine formation|up regulation of arginine biosynthetic process|activation of arginine synthesis|upregulation of arginine anabolism|upregulation of arginine biosynthetic process|up-regulation of arginine biosynthetic process|up-regulation of arginine formation pr 2012-02-01T03:57:41Z biological_process owl:Class GO:0042656 biolink:NamedThing JUN kinase kinase kinase kinase activity Catalysis of the phosphorylation and activation of JUN kinase kinase kinases (JNKKKs). tmpzr1t_l9r_go_relaxed.owl JUNKKKK activity molecular_function owl:Class GO:0043877 biolink:NamedThing galactosamine-6-phosphate isomerase activity Catalysis of the reaction: D-galactosamine 6-phosphate + H2O = D-tagatose 6-phosphate + NH3. tmpzr1t_l9r_go_relaxed.owl AgaI|galactosamine-6-phosphate deaminase activity This function is part of the pathway of N-acetyl-galactosamine and galactosamine utilization. molecular_function owl:Class GO:0005846 biolink:NamedThing nuclear cap binding complex A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export. tmpzr1t_l9r_go_relaxed.owl NCBP-NIP1 complex|snRNA cap binding complex|mRNA cap binding complex|CBC Note that this complex can be found in the cytoplasm as well as the nucleus. cellular_component owl:Class GO:0102418 biolink:NamedThing luteolin-7-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: luteolin 7-O-beta-D-glucoside + UDP-alpha-D-glucose = luteolin-7-O-gentiobioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13801 molecular_function owl:Class GO:0045523 biolink:NamedThing interleukin-27 receptor binding Binding to an interleukin-27 receptor. tmpzr1t_l9r_go_relaxed.owl IL-27|interleukin-27 receptor ligand molecular_function owl:Class GO:0019154 biolink:NamedThing glycolate dehydrogenase activity Catalysis of the reaction: A + glycolate = AH(2) + glyoxylate. tmpzr1t_l9r_go_relaxed.owl glycolic acid dehydrogenase activity|glycolate:acceptor 2-oxidoreductase activity|glycolate:(acceptor) 2-oxidoreductase activity|glycolate oxidoreductase activity KEGG_REACTION:R00476|MetaCyc:GLYCOLATEDEHYDRO-RXN|RHEA:21264|EC:1.1.99.14 molecular_function owl:Class GO:0120148 biolink:NamedThing host cell centrosome A structure in a host cell comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle. tmpzr1t_l9r_go_relaxed.owl host centrosome krc 2018-04-13T15:22:54Z cellular_component owl:Class GO:0044163 biolink:NamedThing host cytoskeleton Any of the various filamentous elements that form the internal framework of host cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the host cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the host cell. The various elements of the host cytoskeleton not only serve in the maintenance of host cellular shape but also have roles in other host cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. tmpzr1t_l9r_go_relaxed.owl jl 2009-08-11T04:27:04Z cellular_component owl:Class GO:0050623 biolink:NamedThing berberine reductase activity Catalysis of the reaction: (R)-canadine + 2 NADP(+) = berberine + H(+) + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl (R)-tetrahydroberberine:NADP+ oxidoreductase activity|(R)-canadine synthase activity EC:1.5.1.31|KEGG_REACTION:R07169|RHEA:21268|MetaCyc:1.5.1.31-RXN molecular_function owl:Class GO:0000344 biolink:NamedThing plastid-encoded plastid RNA polymerase complex B A plastid-encoded DNA-directed RNA polymerase complex that resembles eubacterial multisubunit RNA polymerases with a core composed of alpha, beta, and beta-prime subunits. An additional subunit, a sigma factor, is required for promoter recognition. PEP-B is distinguished from PEP-A by its sensitivity to the antibiotic rifampicin. PEP-B is found in both etioplasts and chloroplasts, but is the predominate form in etioplasts. It forms the core of the PEP-A form; the conversion from PEP-B to PEP-A occurs during chloroplast maturation. tmpzr1t_l9r_go_relaxed.owl PEP-B cellular_component owl:Class GO:0035318 biolink:NamedThing imaginal disc-derived wing hair outgrowth Extrusion of a cellular projection from the apical membrane of an epithelial cell in an imaginal disc-derived wing. Outgrowth initiates approximately 35 hours after puparium formation from the distal side of the cell, and at this stage the cellular extension is termed a prehair. tmpzr1t_l9r_go_relaxed.owl wing hair outgrowth|wing prehair outgrowth biological_process owl:Class GO:0098594 biolink:NamedThing mucin granule A secretory granule that contains mucin. tmpzr1t_l9r_go_relaxed.owl dos 2014-03-11T15:59:11Z cellular_component owl:Class GO:1903609 biolink:NamedThing negative regulation of inward rectifier potassium channel activity Any process that stops, prevents or reduces the frequency, rate or extent of inward rectifier potassium channel activity. tmpzr1t_l9r_go_relaxed.owl downregulation of Kir channel activity|down regulation of Kir channel activity|down-regulation of inward rectifier potassium channel activity|inhibition of inward rectifier potassium channel activity|downregulation of inward rectifier potassium channel activity|down regulation of inward rectifier potassium channel activity|inhibition of Kir channel activity|down-regulation of Kir channel activity|negative regulation of Kir channel activity rl 2014-11-14T20:29:14Z biological_process owl:Class GO:0021745 biolink:NamedThing nucleus ambiguus development The process whose specific outcome is the progression of the nucleus ambiguus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008902 biolink:NamedThing hydroxymethylpyrimidine kinase activity Catalysis of the reaction: 4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-phosphomethylpyrimidine + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl hydroxymethylpyrimidine kinase (phosphorylating)|ATP:4-amino-5-hydroxymethyl-2-methylpyrimidine 5-phosphotransferase activity RHEA:23096|MetaCyc:OHMETPYRKIN-RXN|EC:2.7.1.49|KEGG_REACTION:R03471 molecular_function owl:Class GO:0061966 biolink:NamedThing establishment of left/right asymmetry The initial formation of the type asymmetry in an organism's body plan or part of an organism with respect to the left and right halves. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T16:27:20Z biological_process owl:Class GO:0050372 biolink:NamedThing ubiquitin-calmodulin ligase activity Catalysis of the reaction: n ATP + calmodulin + n ubiquitin = n AMP + n diphosphate + ubiquitin(n)-calmodulin. tmpzr1t_l9r_go_relaxed.owl calmodulin:ubiquitin ligase (AMP-forming)|ubiquityl-calmodulin synthase activity|ubiquitin-calmodulin synthetase activity|uCaM-synthetase activity|ubiquityl-calmodulin synthetase activity MetaCyc:UBIQUITIN--CALMODULIN-LIGASE-RXN molecular_function owl:Class GO:1902899 biolink:NamedThing fatty acid methyl ester biosynthetic process The chemical reactions and pathways resulting in the formation of fatty acid methyl ester. tmpzr1t_l9r_go_relaxed.owl fatty acid methyl ester anabolism|fatty acid methyl ester biosynthesis|fatty acid methyl ester formation|FAME biosynthetic process|fatty acid methyl ester synthesis tt 2014-04-11T03:08:40Z biological_process owl:Class GO:0120112 biolink:NamedThing UDP-glucose transmembrane transport into endoplasmic reticulum The directed movement of UDP-glucose from cytosol to endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-02T15:56:51Z biological_process owl:Class GO:0031484 biolink:NamedThing myosin XIV complex A myosin complex containing a class XIV myosin heavy chain and associated light chains; myosin XIV heavy chains are the simplest known, containing a motor domain, no classic IQ motif and variable length tails. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051520 biolink:NamedThing termination of bipolar cell growth Any process that stops the active process of bipolar cell growth, polarized growth from both ends of a cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070222 biolink:NamedThing sulfide oxidation, using sulfide dehydrogenase A sulfide oxidation process that proceeds via the reaction catalyzed by sulfide dehydrogenase. tmpzr1t_l9r_go_relaxed.owl sulphide oxidation, using sulfide dehydrogenase MetaCyc:PWY-5274 biological_process owl:Class GO:0102748 biolink:NamedThing geranylgeranyl-chlorophyll a reductase activity Catalysis of the reaction: H+ + geranylgeranyl-chlorophyll a + NADPH = dihydrogeranylgeranyl-chlorophyll a + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7664 molecular_function owl:Class GO:0047256 biolink:NamedThing lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity Catalysis of the reaction: cytolipin-H + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:D-galactosyl-1,4-beta-D-glucosylceramide beta-1,3-acetylglucosaminyltransferase activity|beta1->3-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-lactosylceramide beta-acetylglucosaminyltransferase activity|lactosylceramide beta-acetylglucosaminyltransferase activity|LA2 synthase activity EC:2.4.1.206|MetaCyc:2.4.1.206-RXN|RHEA:13905 molecular_function owl:Class GO:0050566 biolink:NamedThing asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: L-glutamine + aspartyl-tRNA(Asn) + ATP = L-glutamate + asparaginyl-tRNA(Asn) + phosphate + ADP. tmpzr1t_l9r_go_relaxed.owl Asp-tRNA(Asn) amidotransferase activity|Asp-tRNAAsn:L-glutamine amido-ligase (ADP-forming)|aspartyl-tRNAAsn amidotransferase activity|aspartyl-tRNAAsn:L-glutamine amido-ligase (ADP-forming)|aspartyl-tRNA(Asn) amidotransferase activity|Asp-AdT activity|asparaginyl-tRNA synthase (glutamine-hydrolysing)|Asp-tRNAAsn amidotransferase activity MetaCyc:6.3.5.6-RXN|RHEA:14513|Wikipedia:Asparaginyl-tRNA_synthase_(glutamine-hydrolysing)|EC:6.3.5.6 molecular_function owl:Class GO:0102648 biolink:NamedThing D-ribose 5-phosphate:D-fructose 6-phosphate transaldolase activity Catalysis of the reaction: D-fructose 6-phosphate + D-ribose 5-phosphate <=> D-glycero-D-altro-octulose 8-phosphate + D-glyceraldehyde 3-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15790 molecular_function owl:Class GO:0043622 biolink:NamedThing cortical microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. tmpzr1t_l9r_go_relaxed.owl cortical microtubule cytoskeleton organization|cortical microtubule organization and biogenesis|cortical microtubule organisation biological_process owl:Class GO:0047349 biolink:NamedThing D-ribitol-5-phosphate cytidylyltransferase activity Catalysis of the reaction: D-ribitol 5-phosphate + CTP = CDP-ribitol + diphosphate. tmpzr1t_l9r_go_relaxed.owl cytidine diphosphoribitol pyrophosphorylase activity|ribitol 5-phosphate cytidylyltransferase activity|CDP-ribitol diphosphorylase activity|CDP-ribitol pyrophosphorylase activity|CDP ribitol pyrophosphorylase activity|cytidine diphosphate ribitol pyrophosphorylase activity|CTP:D-ribitol-5-phosphate cytidylyltransferase activity EC:2.7.7.40|MetaCyc:2.7.7.40-RXN|KEGG_REACTION:R02921|RHEA:12456 molecular_function owl:Class GO:0046281 biolink:NamedThing cinnamic acid catabolic process The chemical reactions and pathways resulting in the breakdown of cinnamic acid, 3-phenyl-2-propenoic acid. tmpzr1t_l9r_go_relaxed.owl cinnamylic acid catabolism|cinnamylic acid catabolic process|cinnamic acid degradation|phenylacrylic acid catabolism|cinnamic acid breakdown|phenylacrylic acid catabolic process|cinnamic acid catabolism biological_process owl:Class GO:0070768 biolink:NamedThing synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Unc13 complex A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Unc13b (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (Snap25, Syt1, Unc13b, Vamp2, Stx1b2, Stx1a)|Snap25-Syt1-Unc13b-Vamp2-Stx1b2-Stx1a complex mah 2009-06-29T05:14:04Z cellular_component owl:Class GO:0008965 biolink:NamedThing phosphoenolpyruvate-protein phosphotransferase activity Catalysis of the reaction: phosphoenolpyruvate + protein L-histidine = pyruvate + protein N(pi)-phospho-L-histidine. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate--protein phosphatase activity|sugar--PEP phosphotransferase enzyme I activity|phosphoenolpyruvate sugar phosphotransferase enzyme I activity|phosphopyruvate--protein factor phosphotransferase activity|enzyme I of the phosphotransferase system|phosphopyruvate--protein phosphotransferase activity|phosphoenolpyruvate:protein-L-histidine N-pros-phosphotransferase activity|phosphoenolpyruvate:protein-L-histidine Npi-phosphotransferase activity RHEA:23880|MetaCyc:2.7.3.9-RXN|EC:2.7.3.9 molecular_function owl:Class GO:0061737 biolink:NamedThing leukotriene signaling pathway A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-leukotriene interaction and ends with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl dph 2015-09-15T12:58:21Z biological_process owl:Class GO:0036469 biolink:NamedThing L-tryptophan decarboxylase activity Catalysis of the reaction: L-tryptophan + H+ = CO2 + tryptamine. tmpzr1t_l9r_go_relaxed.owl RHEA:30339|EC:4.1.1.105 bf 2014-07-21T09:22:24Z molecular_function owl:Class GO:0047426 biolink:NamedThing ricinine nitrilase activity Catalysis of the reaction: H2O + ricinine = NH3 + 3-carboxy-4-methoxy-N-methyl-2-pyridone. tmpzr1t_l9r_go_relaxed.owl ricinine aminohydrolase activity MetaCyc:3.5.5.2-RXN|EC:3.5.5.2|RHEA:22704 molecular_function owl:Class GO:0060373 biolink:NamedThing regulation of ventricular cardiac muscle cell membrane depolarization Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in a ventricular cardiomyocyte. tmpzr1t_l9r_go_relaxed.owl regulation of ventricular cardiomyocyte membrane depolarization|electrocardiogram QRS complex|ventricular depolarization biological_process owl:Class GO:0042495 biolink:NamedThing detection of triacyl bacterial lipopeptide The series of events in which a triacylated bacterial lipoprotein stimulus is received by a cell and converted into a molecular signal. Triacylated bacterial lipoproteins are lipopeptides of bacterial origin containing a nonprotein moiety consisting of three acyl groups. tmpzr1t_l9r_go_relaxed.owl perception of triacylated bacterial lipopeptide|detection of triacylated bacterial lipoprotein|perception of triacylated bacterial lipoprotein Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. biological_process owl:Class GO:0018387 biolink:NamedThing N-terminal peptidyl-amino acid deamination to pyruvic acid The oxidative deamination of N-terminal peptidyl-cysteine, or peptidyl-serine, to form pyruvic acid with an amide bond between its 1-carboxyl group and the N-terminal residue. tmpzr1t_l9r_go_relaxed.owl RESID:AA0127 biological_process owl:Class GO:0030748 biolink:NamedThing amine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + an amine = S-adenosyl-L-homocysteine + a methylated amine. tmpzr1t_l9r_go_relaxed.owl arylamine N-methyltransferase activity|S-adenosyl-L-methionine:amine N-methyltransferase activity|tryptamine N-methyltransferase activity|tryptamine methyltransferase|nicotine N-methyltransferase activity MetaCyc:AMINE-N-METHYLTRANSFERASE-RXN|EC:2.1.1.49 molecular_function owl:Class GO:0031560 biolink:NamedThing cellular bud neck polarisome Protein complex that has a role in determining cell polarity, found at the neck of a fungal bud before and during cytokinesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045131 biolink:NamedThing pre-mRNA branch point binding Binding to a pre-mRNA branch point sequence, located upstream of the 3' splice site. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052828 biolink:NamedThing inositol-3,4-bisphosphate 4-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 3,4-bisphosphate + H2O = 1D-myo-inositol 3-phosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855202|RHEA:43388 ai 2011-11-29T09:57:00Z molecular_function owl:Class GO:0097678 biolink:NamedThing SOCS family protein binding Binding to a member of the suppressor of cytokine signaling (SOCS) family of proteins. SOCS represent an important mechanism to extinguish cytokine and growth factor receptor signaling. Individual SOCS proteins are typically induced by specific cytokines and growth factors, thereby generating a negative feedback loop. SOCS proteins have important functions in development and homeostasis, and in disease, particularly tumor suppression and anti-inflammatory functions. tmpzr1t_l9r_go_relaxed.owl suppressor of cytokine signaling family protein binding pr 2014-11-04T11:32:49Z molecular_function owl:Class GO:0036181 biolink:NamedThing protein localization to linear element A cellular protein localization process in which a protein is transported to, or maintained at, a linear element. A linear element is a proteinaceous scaffold associated with S. pombe chromosomes during meiotic prophase. tmpzr1t_l9r_go_relaxed.owl protein localisation to linear element bf 2012-03-30T04:14:17Z biological_process owl:Class GO:2001071 biolink:NamedThing maltoheptaose binding Binding to maltoheptaose. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T12:04:30Z molecular_function owl:Class GO:0048331 biolink:NamedThing axial mesoderm structural organization The process that contributes to the act of creating the structural organization of the axial mesoderm. This process pertains to the physical shaping of a rudimentary structure. tmpzr1t_l9r_go_relaxed.owl axial mesoderm structural organisation biological_process owl:Class GO:0004060 biolink:NamedThing arylamine N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an arylamine = CoA + an N-acetylarylamine. tmpzr1t_l9r_go_relaxed.owl beta-naphthylamine N-acetyltransferase activity|acetyl CoA-arylamine N-acetyltransferase activity|arylamine acetyltransferase activity|4-aminobiphenyl N-acetyltransferase activity|2-naphthylamine N-acetyltransferase activity|p-aminosalicylate N-acetyltransferase activity|acetyl-CoA:arylamine N-acetyltransferase activity|arylamine acetylase activity|indoleamine N-acetyltransferase activity EC:2.3.1.5|Reactome:R-HSA-174967|RHEA:16613|Reactome:R-HSA-174963|UM-BBD_enzymeID:e0341|MetaCyc:ARYLAMINE-N-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0090577 biolink:NamedThing RNA polymerase IV transcription regulator complex A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase IV. tmpzr1t_l9r_go_relaxed.owl RNA polymerase IV transcription factor complex tb 2014-05-09T14:04:37Z cellular_component owl:Class GO:0007075 biolink:NamedThing positive regulation of transcription involved in exit from mitosis, from RNA polymerase III promoter Any process that increases the frequency, rate or extent of transcription from an RNA polymerase III promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place. tmpzr1t_l9r_go_relaxed.owl activation of transcription on exit from mitosis, from RNA polymerase III promoter|activation of transcription on exit from mitosis, from Pol III promoter biological_process owl:Class GO:0008752 biolink:NamedThing FMN reductase activity Catalysis of the reaction: FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl riboflavine mononucleotide reductase activity|NAD(P)H-dependent FMN reductase activity|riboflavin mononucleotide (reduced nicotinamide adenine dinucleotide (phosphate)) reductase activity|flavin mononucleotide reductase activity|NAD(P)H(2) dehydrogenase (FMN) activity|flavine mononucleotide reductase activity|NAD(P)H2 dehydrogenase (FMN)|riboflavin mononucleotide reductase activity|NAD(P)H dehydrogenase (FMN) activity|NAD(P)H(2):FMN oxidoreductase activity|FMNH2:NAD(P)+ oxidoreductase activity|NAD(P)H2:FMN oxidoreductase activity|NAD(P)H:flavin oxidoreductase activity|NAD(P)H-FMN reductase activity|SsuE|NAD(P)H:FMN oxidoreductase activity EC:1.5.1.39 molecular_function owl:Class GO:0000721 biolink:NamedThing (R,R)-butanediol dehydrogenase activity Catalysis of the reversible reaction: (R,R)-butane-2,3-diol + NAD+ = (R)-acetoin + NADH + H(+). tmpzr1t_l9r_go_relaxed.owl aminopropanol oxidoreductase activity|butyleneglycol dehydrogenase activity|(R)-2,3-butanediol dehydrogenase activity|1-amino-2-propanol dehydrogenase activity|D-butanediol dehydrogenase activity|diacetyl (acetoin) reductase activity|(R)-diacetyl reductase activity|D-1-amino-2-propanol dehydrogenase activity|butylene glycol dehydrogenase activity|D-aminopropanol dehydrogenase activity|D-(-)-butanediol dehydrogenase activity|1-amino-2-propanol oxidoreductase activity|D-1-amino-2-propanol:NAD(2) oxidoreductase activity|2,3-butanediol dehydrogenase activity EC:1.1.1.4|RHEA:24340|MetaCyc:RR-BUTANEDIOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0004643 biolink:NamedThing phosphoribosylaminoimidazolecarboxamide formyltransferase activity Catalysis of the reaction: 10-formyltetrahydrofolate + 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide = tetrahydrofolate + 5'-phosphoribosyl-5-formamido-4-imidazolecarboxamide. tmpzr1t_l9r_go_relaxed.owl aminoimidazolecarboxamide ribonucleotide transformylase activity|5-amino-4-imidazolecarboxamide ribonucleotide transformylase activity|10-formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase activity|10-formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazole-carboxamide N-formyltransferase activity|5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase activity|5-amino-1-ribosyl-4-imidazolecarboxamide 5'-phosphate transformylase activity|AICAR formyltransferase activity|AICAR transformylase activity|5-amino-4-imidazolecarboxamide ribotide transformylase activity EC:2.1.2.3|MetaCyc:AICARTRANSFORM-RXN|RHEA:22192|Reactome:R-HSA-73798 molecular_function owl:Class GO:0050664 biolink:NamedThing oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor EC:1.6.3.- molecular_function owl:Class GO:0070467 biolink:NamedThing RC-1 DNA recombination complex A protein complex that contains DNA ligase III, DNA polymerase epsilon, a 5'-3' exonuclease, and the SMC1 and SMC2 proteins, and is involved in recombinational repair of deletions and gaps in DNA. tmpzr1t_l9r_go_relaxed.owl RC-1 complex (recombination complex 1)|DNA recombination complex RC-1 cellular_component owl:Class GO:0102889 biolink:NamedThing beta-elemene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> beta-elemene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8432 molecular_function owl:Class GO:0098726 biolink:NamedThing symmetric division of skeletal muscle satellite stem cell The symmetric division of a skeletal muscle satellite stem cell, resulting in two skeletal muscle satellite stem cells. This process is involved in amplification of the pool of these cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0000830 biolink:NamedThing inositol hexakisphosphate 4-kinase activity Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042193 biolink:NamedThing methylmercury catabolic process The chemical reactions and pathways resulting in the breakdown of methylmercury (MeHg+), a highly toxic organometal. tmpzr1t_l9r_go_relaxed.owl methylmercury catabolism|methylmercury degradation|methylmercury breakdown biological_process owl:Class GO:0102265 biolink:NamedThing tRNA-dihydrouridine47 synthase activity Catalysis of the reaction: a 5,6-dihydrouracil47 in tRNA + NAD(P) <=> H+ + a uracil47 in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.89|MetaCyc:RXN-12457 molecular_function owl:Class GO:0050147 biolink:NamedThing nucleoside ribosyltransferase activity Catalysis of the reaction: D-ribosyl-base1 + base2 = D-ribosyl-base2 + base1. tmpzr1t_l9r_go_relaxed.owl nucleoside N-ribosyltransferase activity|nucleoside:purine(pyrimidine) D-ribosyltransferase activity MetaCyc:NUCLEOSIDE-RIBOSYLTRANSFERASE-RXN|EC:2.4.2.5 molecular_function owl:Class GO:1902922 biolink:NamedThing poly(3-hydroxyvalerate) metabolic process The chemical reactions and pathways involving poly(3-hydroxyvalerate). tmpzr1t_l9r_go_relaxed.owl poly(3-hydroxyvalerate) metabolism tt 2014-04-21T19:13:56Z biological_process owl:Class GO:0010342 biolink:NamedThing endosperm cellularization The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization. tmpzr1t_l9r_go_relaxed.owl cellularization of endosperm biological_process owl:Class GO:0014914 biolink:NamedThing myoblast maturation involved in muscle regeneration A developmental process, independent of morphogenetic (shape) change, that is required for a myoblast cell to attain its fully functional state involved in muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018289 biolink:NamedThing molybdenum incorporation into metallo-sulfur cluster The incorporation of molybdenum into a metallo-sulfur cluster. tmpzr1t_l9r_go_relaxed.owl molybdenum incorporation into metallo-sulphur cluster biological_process owl:Class GO:0019277 biolink:NamedThing UDP-N-acetylgalactosamine biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylgalactosamine synthesis|UDP-N-acetylgalactosamine anabolism|UDP-N-acetylgalactosamine formation|UDP-N-acetylgalactosamine biosynthesis MetaCyc:UDPNACETYLGALSYN-PWY biological_process owl:Class GO:0001052 biolink:NamedThing plastid PEP RNA polymerase core enzyme binding Binding to a bacterial-type plastid PEP RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one double prime subunit. tmpzr1t_l9r_go_relaxed.owl krc 2010-09-23T02:49:31Z molecular_function owl:Class GO:0001000 biolink:NamedThing bacterial-type RNA polymerase core enzyme binding Binding to a bacterial-type RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one omega subunit. tmpzr1t_l9r_go_relaxed.owl eubacterial-type RNA polymerase core enzyme binding Should omega be included here? krc 2010-08-17T04:59:00Z molecular_function owl:Class GO:0016267 biolink:NamedThing O-glycan processing, core 1 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 1 O-glycan structure, Gal-beta-(1->3)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047938 biolink:NamedThing glucose-6-phosphate 1-epimerase activity Catalysis of the reaction: alpha-D-glucose 6-phosphate = beta-D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl glucose-6 phosphate 1-epimerase activity|D-glucose-6-phosphate 1-epimerase activity EC:5.1.3.15|RHEA:16249|MetaCyc:GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN molecular_function owl:Class GO:0098018 biolink:NamedThing viral capsid, minor subunit The part of the viral capsid that comprises the less common capsomere type. For example, in a T=3 icosahedral capsid, which is composed of 12 pentameric and 20 hexameric capsomeres, the pentameric capsomeres are minor subunits. tmpzr1t_l9r_go_relaxed.owl minor head protein|minor capsomere bm 2012-07-19T11:28:18Z cellular_component owl:Class GO:0050216 biolink:NamedThing propanediol-phosphate dehydrogenase activity Catalysis of the reaction: NAD(+) + propane-1,2-diol 1-phosphate = H(+) + hydroxyacetone phosphate + NADH. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R04236|EC:1.1.1.7|MetaCyc:PROPANEDIOL-PHOSPHATE-DEHYDROGENASE-RXN|RHEA:21584 molecular_function owl:Class GO:0061653 biolink:NamedThing ISG15 conjugating enzyme activity Isoenergetic transfer of ISG15 from one protein to another via the reaction X-ISG15 + Y -> Y-ISG15 + X, where both the X-ISG15 and Y-ISG15 linkages are thioester bonds between the C-terminal amino acid of ISG15 and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:24:50Z molecular_function owl:Class GO:0034799 biolink:NamedThing dihydride TNP tautomerase activity Catalysis of the reaction: TNP dihydride Meisenheimer complex (aci form) = TNP dihydride Meisenheimer complex (nitro form). tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1070 molecular_function owl:Class GO:0046784 biolink:NamedThing viral mRNA export from host cell nucleus The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation. tmpzr1t_l9r_go_relaxed.owl intronless viral mRNA export out of nucleus|intronless viral mRNA-nucleus export|intronless viral mRNA export from host cell nucleus|intronless viral mRNA export from host nucleus|intronless viral mRNA transport from nucleus to cytoplasm biological_process owl:Class GO:0034931 biolink:NamedThing 1-hydroxypyrene methyltransferase activity Catalysis of the reaction: 1-hydroxypyrene + XCH3 = 1-methoxypyrene + HX. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0953 molecular_function owl:Class GO:0034855 biolink:NamedThing 4-AD 9alpha-hydroxylase activity Catalysis of the reaction: androst-4-ene-3,17-dione + O2 + 2 H+ + 2 e- = 9alpha-hydroxy-4-androstene-3,17-dione + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.15.-|UM-BBD_reactionID:r1153 molecular_function owl:Class GO:0102361 biolink:NamedThing esculetin 4-O-beta-glucosyltransferase activity Catalysis of the reaction: esculetin + UDP-alpha-D-glucose <=> 4-O-beta-D-glucosyl-esculetin + UDP + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.126|MetaCyc:RXN-13471 molecular_function owl:Class GO:0045925 biolink:NamedThing positive regulation of female receptivity Any process that activates or increases the receptiveness of a female to male advances. tmpzr1t_l9r_go_relaxed.owl activation of female receptivity|up-regulation of female receptivity|stimulation of female receptivity|up regulation of female receptivity|upregulation of female receptivity biological_process owl:Class GO:0007400 biolink:NamedThing neuroblast fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into a neuroblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. An example of this process is found in Mus musculus. tmpzr1t_l9r_go_relaxed.owl neuroblast cell fate determination|neuroblast identity determination GO:0007408|GO:0043347|GO:0043348 biological_process owl:Class GO:0060112 biolink:NamedThing generation of ovulation cycle rhythm The process which controls the timing of the type of sexual cycle seen in female mammals. tmpzr1t_l9r_go_relaxed.owl generation of menstrual cycle rhythm|generation of estrus cycle rhythm|generation of oestrus cycle rhythm biological_process owl:Class GO:0031465 biolink:NamedThing Cul4B-RING E3 ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul4B subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by unknown subunits. tmpzr1t_l9r_go_relaxed.owl cullin-RING ligase 4B cellular_component owl:Class GO:1901705 biolink:NamedThing L-isoleucine biosynthetic process The chemical reactions and pathways resulting in the formation of L-isoleucine. tmpzr1t_l9r_go_relaxed.owl L-isoleucine biosynthesis|L-isoleucine formation|L-isoleucine synthesis|L-isoleucine anabolism pde 2012-12-13T23:32:56Z biological_process owl:Class GO:0090593 biolink:NamedThing peptidyl-histidine autophosphorylation The phosphorylation by a protein of one or more of its own histidine residues, or a histidine residue on an identical protein. tmpzr1t_l9r_go_relaxed.owl tb 2014-06-06T14:19:46Z biological_process owl:Class GO:0034576 biolink:NamedThing N-isopropylacetanilide amidohydrolase activity Catalysis of the reaction: N-isopropylacetanilide + OH- = N-isopropylaniline + acetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0913 molecular_function owl:Class GO:0032840 biolink:NamedThing intramolecular proline-rich ligand binding Binding to a proline-rich region within the same polypeptide. tmpzr1t_l9r_go_relaxed.owl intramolecular proline-rich region binding molecular_function owl:Class GO:2000018 biolink:NamedThing regulation of male gonad development Any process that modulates the frequency, rate or extent of male gonad development. tmpzr1t_l9r_go_relaxed.owl regulation of testis development|regulation of testicular development jl 2010-07-15T03:29:05Z biological_process owl:Class GO:0048156 biolink:NamedThing tau protein binding Binding to tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905573 biolink:NamedThing ganglioside GM1 binding Binding to ganglioside GM1. tmpzr1t_l9r_go_relaxed.owl pga 2016-10-19T10:57:28Z molecular_function owl:Class GO:1901148 biolink:NamedThing gene expression involved in extracellular matrix organization Any gene expression that is involved in extracellular matrix organization. Gene expression includes both transcription to produce an RNA transcript, and the translation of that mRNA into protein. Protein maturation is included in gene expression when required to form an active form of a product from an inactive precursor form. tmpzr1t_l9r_go_relaxed.owl expression of extracellular matrix proteins|extracellular matrix protein production bf 2012-07-16T03:29:30Z biological_process owl:Class GO:0062233 biolink:NamedThing F2-isoprostane catabolic process The chemical reactions and pathways resulting in the breakdown of F2-isoprostane. tmpzr1t_l9r_go_relaxed.owl dph 2020-03-23T15:24:38Z biological_process owl:Class GO:0039699 biolink:NamedThing viral mRNA cap methylation Methylation of the 2'-O-ribose of the first or second transcribed nucleotide of a viral mRNA. Methylation allows evasion of the host innate immune response, which degrades cap0 (non-methylated) mRNAs. tmpzr1t_l9r_go_relaxed.owl IFIT mRNA restriction evasion by virus bf 2013-11-06T14:39:17Z biological_process owl:Class GO:0030485 biolink:NamedThing smooth muscle contractile fiber The contractile fiber of smooth muscle cells. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052878 biolink:NamedThing linoleate 8R-lipoxygenase activity Catalysis of the reaction: O(2) + linoleate = (8R,9Z,12Z)-8-hydroperoxyoctadeca-9,12-dienoate. tmpzr1t_l9r_go_relaxed.owl 5,8-LDS (bifunctional enzyme) activity|7,8-linoleate diol synthase (bifunctional enzyme) activity|5,8-linoleate diol synthase (bifunctional enzyme) activity|linoleate diol synthase activity|7,8-LDS (bifunctional enzyme) activity KEGG_REACTION:R07061|EC:1.13.11.60|RHEA:25395|MetaCyc:1.13.11.44-RXN molecular_function owl:Class GO:0047771 biolink:NamedThing carboxymethylhydantoinase activity Catalysis of the reaction: L-5-carboxymethylhydantoin + H(2)O = N-carbamoyl-L-aspartate + H(+). tmpzr1t_l9r_go_relaxed.owl L-5-carboxymethylhydantoin amidohydrolase activity|hydantoin hydrolase activity MetaCyc:CARBOXYMETHYLHYDANTOINASE-RXN|EC:3.5.2.4|KEGG_REACTION:R02284|RHEA:12028 molecular_function owl:Class GO:0062010 biolink:NamedThing primitive palate development The biological process whose specific outcome is the progression of the primitive palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-26T23:00:48Z biological_process owl:Class GO:1904016 biolink:NamedThing response to Thyroglobulin triiodothyronine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroglobulin triiodothyronine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-06T19:34:07Z biological_process owl:Class GO:0102391 biolink:NamedThing decanoate-CoA ligase activity Catalysis of the reaction: ATP + decanoate + CoA = AMP + diphosphate + decanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18967 MetaCyc:RXN-13614|RHEA:33627 molecular_function owl:Class GO:0003327 biolink:NamedThing type B pancreatic cell fate commitment The commitment of a cell to a type B pancreatic cell fate and its capacity to differentiate into a type B pancreatic cell. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin. tmpzr1t_l9r_go_relaxed.owl pancreatic B cell fate commitment dph 2009-11-02T08:31:24Z biological_process owl:Class GO:0019328 biolink:NamedThing anaerobic gallate catabolic process The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic gallic acid catabolism|anaerobic gallic acid catabolic process|anaerobic gallate degradation|anaerobic gallate catabolism|gallate fermentation|anaerobic gallate breakdown MetaCyc:P3-PWY biological_process owl:Class GO:0047204 biolink:NamedThing chlorogenate-glucarate O-hydroxycinnamoyltransferase activity Catalysis of the reaction: D-glucarate + chlorogenate = (-)-quinate + 2-O-caffeoylglucarate. tmpzr1t_l9r_go_relaxed.owl chlorogenate:glucarate caffeoyltransferase activity|chlorogenate:glucarate O-(hydroxycinnamoyl)transferase activity|chlorogenic acid:glucaric acid O-caffeoyltransferase activity KEGG_REACTION:R02998|MetaCyc:2.3.1.98-RXN|EC:2.3.1.98|RHEA:23204 molecular_function owl:Class GO:0016270 biolink:NamedThing O-glycan processing, core 4 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 4 O-glycan structure, GlcNAc-beta-(1->6)[GalNAc-beta-(1->3)]-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004397 biolink:NamedThing histidine ammonia-lyase activity Catalysis of the reaction: L-histidine = urocanate + NH3. tmpzr1t_l9r_go_relaxed.owl histidine alpha-deaminase activity|histidinase activity|L-histidine ammonia-lyase (urocanate-forming)|histidase activity|L-histidine ammonia-lyase activity RHEA:21232|Reactome:R-HSA-70899|MetaCyc:HISTIDINE-AMMONIA-LYASE-RXN|EC:4.3.1.3 molecular_function owl:Class GO:0035612 biolink:NamedThing AP-2 adaptor complex binding Binding to an AP-2 adaptor complex. The AP-2 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits and links clathrin to the membrane surface of a vesicle. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC). tmpzr1t_l9r_go_relaxed.owl AP-2 clathrin adaptor complex binding bf 2010-11-25T03:51:17Z molecular_function owl:Class GO:0071759 biolink:NamedThing IgX immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgX isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgX immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgX immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Note that IgX is found in amphibians. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0102436 biolink:NamedThing 7-methylmyricetin 4'-O-methyltransferase activity Catalysis of the reaction: 7-O-methylmyricetin + S-adenosyl-L-methionine <=> 7,4'-dimethylmyricetin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13911 molecular_function owl:Class GO:0045157 biolink:NamedThing electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the noncyclic electron transport pathway of photosynthesis. tmpzr1t_l9r_go_relaxed.owl cytochrome molecular_function owl:Class GO:0016402 biolink:NamedThing pristanoyl-CoA oxidase activity Catalysis of the reaction: pristanoyl-CoA + O2 = trans-2,3-dehydropristanoyl-CoA + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl RHEA:40459|Reactome:R-HSA-389889|Reactome:R-HSA-389891 molecular_function owl:Class GO:0090722 biolink:NamedThing receptor-receptor interaction The aggregation, arrangement and bonding together of two or more different receptor complexes that individually undergo combination with a hormone, neurotransmitter, drug or intracellular messenger to form a higher level receptor complex. The formation of the higher level complex initiates a change in cell function. tmpzr1t_l9r_go_relaxed.owl hetero-receptor complex formation tb 2016-11-11T17:41:56Z molecular_function owl:Class GO:0061993 biolink:NamedThing calcium:proton antiporter complex A protein complex that enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl CAX1 homodimer|CAX1-CAX3 complex|CAX3 homodimer dph 2018-02-16T02:17:10Z cellular_component owl:Class GO:0015987 biolink:NamedThing GTP synthesis coupled proton transport The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers GTP synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052602 biolink:NamedThing 4-chloronitrobenzene nitroreductase activity Catalysis of the reaction: 4-chloronitrobenzene + NADPH + H+ = 1-chloro-4-nitrosobenzene + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0245|MetaCyc:RXN-8833 molecular_function owl:Class GO:0050019 biolink:NamedThing L-arabinitol 4-dehydrogenase activity Catalysis of the reaction: L-arabinitol + NAD(+) = L-xylulose + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.12|MetaCyc:L-ARABINITOL-4-DEHYDROGENASE-RXN|KEGG_REACTION:R01903|RHEA:16381 molecular_function owl:Class GO:0022020 biolink:NamedThing medial ganglionic eminence cell proliferation The multiplication or reproduction of medial ganglionic eminence cells, resulting in the expansion of a cell population. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051742 biolink:NamedThing 2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-methyl-6-solanyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-solanyl-1,4-benzoquinone + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl MSBQ methyltransferase activity RHEA:37999|MetaCyc:RXN-2762 molecular_function owl:Class GO:0061689 biolink:NamedThing tricellular tight junction An specialized occluding junction where three epithelial cells meet. It is composed of a branching network of sealing strands that run perpendicularly to the bicellular tight junction at the point of contact between three epithelial cells in an epithelial sheet. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-12T10:34:19Z cellular_component owl:Class GO:0050005 biolink:NamedThing isohexenylglutaconyl-CoA hydratase activity Catalysis of the reaction: 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA = 3-(4-methylpent-3-en-1-yl)pent-2-enedioyl-CoA + H(2)O. tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-3-isohexenylglutaryl-CoA-hydrolase activity|3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA hydro-lyase activity|3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA hydro-lyase [3-(4-methylpent-3-en-1-yl)pent-2-enedioyl-CoA-forming]|isohexenylglutaconyl coenzyme A hydratase activity|beta-isohexenylglutaconyl-CoA-hydratase activity KEGG_REACTION:R03493|EC:4.2.1.57|MetaCyc:ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN|RHEA:24144|UM-BBD_reactionID:r1167 molecular_function owl:Class GO:0102117 biolink:NamedThing gibberellin A9 carboxyl methyltransferase activity Catalysis of the reaction: gibberellin A9 + S-adenosyl-L-methionine <=> gibberellin A9 methyl ester + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:36119|MetaCyc:RXN-11358|EC:2.1.1.275 molecular_function owl:Class GO:0045004 biolink:NamedThing DNA replication proofreading Correction of replication errors by DNA polymerase using a 3'-5' exonuclease activity. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008847 biolink:NamedThing Enterobacter ribonuclease activity Catalysis of the endonucleolytic cleavage to 3'-phosphomononucleotides and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. tmpzr1t_l9r_go_relaxed.owl Enterobacter RNase activity MetaCyc:3.1.27.6-RXN|EC:4.6.1.21 molecular_function owl:Class GO:0099071 biolink:NamedThing dynamic microtubule bundle A microtubule bundle that undergoes changes in length, and in which microtubule sliding takes place. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003120 biolink:NamedThing regulation of vasoconstriction by circulating epinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of secretion of epinephrine into the bloodstream. tmpzr1t_l9r_go_relaxed.owl regulation of vasoconstriction by circulating adrenaline biological_process owl:Class GO:1990738 biolink:NamedThing pseudouridine 5'-phosphatase activity Catalysis of the reaction: pseudouridine 5'-phosphate + H2O = pseudouridine + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:10944|EC:3.1.3.96 vw 2015-05-02T11:05:50Z molecular_function owl:Class GO:0004156 biolink:NamedThing dihydropteroate synthase activity Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate + 4-aminobenzoate = diphosphate + dihydropteroate. tmpzr1t_l9r_go_relaxed.owl 7,8-dihydropteroic acid synthetase activity|DHPS activity|(2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase activity|7,8-dihydropteroate synthase activity|2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase activity|dihydropteroic synthetase activity|dihydropteroate pyrophosphorylase activity|dihydropteroate synthetase activity|7,8-dihydropteroate synthetase activity|dihydropteroate diphosphorylase activity MetaCyc:H2PTEROATESYNTH-RXN|RHEA:19949|EC:2.5.1.15 molecular_function owl:Class GO:0052715 biolink:NamedThing mannosyl-diinositol phosphorylceramide phospholipase activity Catalysis of the reaction: mannosyl-diinositol phosphorylceramide + H2O = C26-phytoceramide + mannosyldiphosphorylinositol. tmpzr1t_l9r_go_relaxed.owl ai 2011-08-05T08:02:57Z molecular_function owl:Class GO:0007489 biolink:NamedThing maintenance of imaginal histoblast diploidy The negative regulation of the differentiation of polytenized larval hypodermal cells from abdominal histoblasts. The abdominal histoblasts remain a small cluster of diploid cells among the polytenized larval hypodermal cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018484 biolink:NamedThing 4-hydroxybenzaldehyde dehydrogenase activity Catalysis of the reaction: 4-hydroxybenzaldehyde + NAD+ + H2O = 4-hydroxybenzoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 3-hydroxybenzaldehyde:NAD+ oxidoreductase activity|p-hydroxybenzaldehyde dehydrogenase activity EC:1.2.1.64|UM-BBD_reactionID:r0273|MetaCyc:HYDROXYBENZALDEHYDE-OXIDATION-NAD-RXN|RHEA:20305 molecular_function owl:Class GO:0006147 biolink:NamedThing guanine catabolic process The chemical reactions and pathways resulting in the breakdown of guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important. tmpzr1t_l9r_go_relaxed.owl guanine catabolism|guanine degradation|guanine breakdown biological_process owl:Class GO:0005596 biolink:NamedThing collagen type XIV trimer A collagen homotrimer of alpha1(XIV) chains; type XIV collagen triple helices may link sheet-forming or fibrillar collagens to other structures. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035301 biolink:NamedThing Hedgehog signaling complex A multiprotein complex that binds microtubules in a Hedgehog-dependent manner, and is required for signal transduction by members of the Hedgehog family of proteins. The core components of the complex are the serine/threonine protein kinase Fused, the kinesin motor protein Costal2 (Cos2), and a zinc finger transcription factor (Gli family members in humans, and Cubitus interruptus (Ci) in Drosophila). tmpzr1t_l9r_go_relaxed.owl Hedgehog signalling complex|HSC cellular_component owl:Class GO:0062046 biolink:NamedThing dehydropipecolic acid reductase Catalysis of the reaction: dehydropipecolic acid + NAD(P)H + H+ = L-pipecolic acid + NAD(P)+. tmpzr1t_l9r_go_relaxed.owl dph 2018-05-11T12:16:00Z molecular_function owl:Class GO:1901051 biolink:NamedThing atropine biosynthetic process The chemical reactions and pathways resulting in the formation of atropine. tmpzr1t_l9r_go_relaxed.owl atropine formation|atropine biosynthesis|atropine anabolism|atropine synthesis yaf 2012-06-28T04:51:59Z biological_process owl:Class GO:0033829 biolink:NamedThing O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity Catalysis of the transfer of a beta-D-GlcNAc residue from UDP-D-GlcNAc to the fucose residue of a fucosylated protein acceptor. tmpzr1t_l9r_go_relaxed.owl UDP-D-GlcNAc:O-L-fucosylpeptide 3-beta-N-acetyl-D-glucosaminyltransferase activity|O-fucosylpeptide beta-1,3-N-acetylglucosaminyltransferase activity MetaCyc:2.4.1.222-RXN|EC:2.4.1.222|Reactome:R-HSA-5096538|Reactome:R-HSA-1912355 molecular_function owl:Class GO:0042351 biolink:NamedThing 'de novo' GDP-L-fucose biosynthetic process The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271). tmpzr1t_l9r_go_relaxed.owl GDP-L-fucose biosynthetic process, de novo pathway|GDP-L-fucose biosynthesis, de novo pathway|'de novo' GDP-L-fucose formation|'de novo' GDP-L-fucose biosynthesis|'de novo' GDP-L-fucose anabolism|'de novo' GDP-L-fucose synthesis MetaCyc:PWY-66 biological_process owl:Class GO:1990533 biolink:NamedThing Dom34-Hbs1 complex A protein complex consisting of one subunit known as Dom34 or Pelota that has similarity to translation termination factor eRF1, and another subunit, Hbs1, that is a GTPase with similarity to translation termination factor eRF3. The Dom34-Hbs1 complex has a role in cotranslational mRNA quality control by promoting ribosomal subunit dissociation and peptidyl-tRNA release when translation is stalled, facilitating no-go decay and nonstop decay. tmpzr1t_l9r_go_relaxed.owl Dom34:Hbs1 complex mcc 2014-11-07T20:49:03Z cellular_component owl:Class GO:0070294 biolink:NamedThing renal sodium ion absorption A renal system process in which sodium ions are taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl nephron sodium ion absorption|renal sodium ion reabsorption biological_process owl:Class GO:0050079 biolink:NamedThing acetylenecarboxylate hydratase activity, producing 3-oxopropanoate Catalysis of the reaction: 3-oxopropanoate = propynoate + H2O. tmpzr1t_l9r_go_relaxed.owl acetylenecarboxylate hydratase activity, producing malonate-semialdehyde|3-oxopropanoate hydro-lyase (propynoate-forming)|acetylenemonocarboxylate hydrase activity|acetylenecarboxylate hydratase activity|malonate-semialdehyde dehydratase activity|acetylmonocarboxylic acid hydrase activity|acetylenemonocarboxylate hydratase activity|alkynoate hydratase activity|3-oxopropanoate hydro-lyase activity RHEA:17957|MetaCyc:MALONATE-SEMIALDEHYDE-DEHYDRATASE-RXN|EC:4.2.1.27 Note that this function was formerly EC:4.2.1.71. GO:0047607 molecular_function owl:Class GO:1902051 biolink:NamedThing (25S)-Delta(4)-dafachronate binding Binding to (25S)-Delta(4)-dafachronate. tmpzr1t_l9r_go_relaxed.owl ab 2013-04-11T08:33:41Z molecular_function owl:Class GO:0042075 biolink:NamedThing nickel incorporation into nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide The incorporation of nickel into a nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide, found in carbon monoxide dehydrogenase. tmpzr1t_l9r_go_relaxed.owl nickel incorporation into nickel-iron-sulphur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulphide RESID:AA0310 biological_process owl:Class GO:0030553 biolink:NamedThing cGMP binding Binding to cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl 3',5' cGMP binding|cyclic GMP binding|3',5'-cGMP binding molecular_function owl:Class GO:0051634 biolink:NamedThing inhibition of acetylcholine uptake Any process that prevents the activation of the directed movement of acetylcholine into a cell. tmpzr1t_l9r_go_relaxed.owl inhibition of acetylcholine import biological_process owl:Class GO:0033693 biolink:NamedThing neurofilament bundle assembly The assembly of neurofilaments into bundles, in which the filaments are longitudinally oriented, with numerous crossbridges between them. Neurofilament bundles may be cross-linked to each other, to membrane-bounded organelles or other cytoskeletal structures such as microtubules. tmpzr1t_l9r_go_relaxed.owl NF bundle assembly biological_process owl:Class GO:0050385 biolink:NamedThing ureidoglycolate lyase activity Catalysis of the reaction: (S)-ureidoglycolate = glyoxylate + urea. tmpzr1t_l9r_go_relaxed.owl (S)-ureidoglycolate urea-lyase activity|ureidoglycolate hydrolase activity|ureidoglycolatase activity|(S)-ureidoglycolate urea-lyase (glyoxylate-forming)|ureidoglycolase activity RHEA:11304|KEGG_REACTION:R00776|EC:4.3.2.3|MetaCyc:UREIDOGLYCOLATE-LYASE-RXN Take care to annotate to the reaction, not simply by enzyme name. Note that the name "ureidoglycolate hydrolase" (listed as a synonym here) has variously been used to refer to two distinctly different enzymes. Both enzymes act on ureidoglycolate and produce glyoxylate, but the mechanism and reaction products are different. The "ureidoglycolate hydrolase" listed in the Enzyme commission (EC) is a ureidoglycolate amidohydrolase, releasing ammonia, (EC:3.5.3.19 ; GO:0004848). The "ureidoglycolate hydrolase" characterized in PMID:3915539 (published prior to the EC designation of EC:3.5.3.19) is a ureidoglycolate lyase, releasing urea (EC:4.3.2.3 ; GO:0050385). The inappropriate labelling of ureidoglycolate lyase as EC:3.5.3.19 has caused much confusion in the literature (see PMID:24107613). Take care to correctly annotate based on the reaction products, rather than name. molecular_function owl:Class GO:1904620 biolink:NamedThing cellular response to dimethyl sulfoxide Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dimethyl sulfoxide stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to DMSO sl 2015-08-27T19:14:07Z biological_process owl:Class GO:0019325 biolink:NamedThing anaerobic fructose catabolic process The chemical reactions and pathways resulting in the breakdown of fructose that occurs in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic fructose degradation|anaerobic fructose breakdown|anaerobic fructose catabolism MetaCyc:ANAEROFRUCAT-PWY biological_process owl:Class GO:0004150 biolink:NamedThing dihydroneopterin aldolase activity Catalysis of the reaction: 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine = 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + glycolaldehyde. tmpzr1t_l9r_go_relaxed.owl 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase (2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine-forming)|2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase activity RHEA:10540|MetaCyc:H2NEOPTERINALDOL-RXN|EC:4.1.2.25 molecular_function owl:Class GO:1904928 biolink:NamedThing coreceptor activity involved in canonical Wnt signaling pathway Any coreceptor activity that is involved in a canonical Wnt signaling pathway. tmpzr1t_l9r_go_relaxed.owl coreceptor, soluble ligand activity involved in frizzled-1 receptor signaling pathway|coreceptor, insoluble ligand activity involved in Wnt receptor signalling pathway through beta-catenin|coreceptor, insoluble ligand activity involved in canonical Wnt-activated signaling pathway|coreceptor activity involved in canonical Wnt receptor signaling pathway|coreceptor, insoluble ligand activity involved in frizzled-1 receptor signaling pathway|coreceptor, soluble ligand activity involved in canonical Wnt receptor signaling pathway|coreceptor activity involved in Wnt receptor signalling pathway through beta-catenin|Wnt co-receptor, canonical pathway|coreceptor activity involved in Wnt receptor signaling pathway via beta-catenin|coreceptor, insoluble ligand activity involved in Wnt receptor signaling pathway via beta-catenin|coreceptor activity involved in frizzled-1 receptor signaling pathway|coreceptor, insoluble ligand activity involved in canonical Wnt receptor signaling pathway|coreceptor, insoluble ligand activity involved in canonical Wnt signaling pathway|coreceptor, soluble ligand activity involved in canonical Wnt signaling pathway|coreceptor, soluble ligand activity involved in Wnt receptor signalling pathway through beta-catenin|coreceptor, soluble ligand activity involved in Wnt receptor signaling pathway through beta-catenin|coreceptor activity involved in canonical Wnt-activated signaling pathway|Wnt co-receptor activity, canonical signaling|coreceptor activity involved in Wnt receptor signaling pathway through beta-catenin|coreceptor, insoluble ligand activity involved in Wnt receptor signaling pathway through beta-catenin|coreceptor, soluble ligand activity involved in canonical Wnt-activated signaling pathway|coreceptor, soluble ligand activity involved in Wnt receptor signaling pathway via beta-catenin bf 2016-01-28T15:14:46Z molecular_function owl:Class GO:0140232 biolink:NamedThing intracellular cAMP-activated cation channel activity involved in regulation of presynaptic membrane potential Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts, to regulate the presynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl intracellular cAMP activated cation channel activity involved in regulation of presynaptic membrane potential https://github.com/geneontology/synapse/issues/231 Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. pg 2018-07-09T11:30:40Z molecular_function owl:Class GO:0097390 biolink:NamedThing chemokine (C-X-C motif) ligand 12 production The appearance of chemokine (C-X-C motif) ligand 12 (CXCL12) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl CXCL12 production pr 2012-10-23T07:57:28Z biological_process owl:Class GO:0098616 biolink:NamedThing selenate adenylyltransferase (ATP) activity Catalysis of the reaction: ATP + H2SeO4 => diphosphate + adenylylselenate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408525 molecular_function owl:Class GO:0035369 biolink:NamedThing pre-B cell receptor complex An immunoglobulin-like complex that is present in at least the plasma membrane of pre-B cells, and that is composed of two identical immunoglobulin heavy chains and two surrogate light chains, each composed of the lambda-5 and VpreB proteins, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. tmpzr1t_l9r_go_relaxed.owl pre-BCR Despite its name, the pre-BCR is not a receptor complex, as it appears to provide a low level of signal not dependent on a ligand, but rather simply on correct assembly of the complex as a measure for correct Ig heavy chain recombination and folding. A significant proportion of pre-BCR complexes fail to reach the cell surface, and in some cases may provide their signaling function from the trans-Golgi network or lysosome. bf 2010-03-11T10:46:10Z cellular_component owl:Class GO:1990567 biolink:NamedThing DPS complex A protein serine/threonine phosphatase complex that in S. pombe consists of the proteins Dis2, Ppn1, and Swd22. tmpzr1t_l9r_go_relaxed.owl al 2014-11-27T09:56:18Z cellular_component owl:Class GO:1990636 biolink:NamedThing reproductive senescence A natural reduction in reproductive capacity with aging, often taking the form of a switch from regular reproductive cycles to irregular and infrequent ones. tmpzr1t_l9r_go_relaxed.owl sl 2015-02-10T23:17:56Z biological_process owl:Class GO:1901084 biolink:NamedThing pyrrolizidine alkaloid catabolic process The chemical reactions and pathways resulting in the breakdown of pyrrolizidine alkaloid. tmpzr1t_l9r_go_relaxed.owl pyrrolizidine alkaloid catabolism|pyrrolizidine alkaloid breakdown|pyrrolizidine alkaloid degradation yaf 2012-07-05T10:28:20Z biological_process owl:Class GO:0016058 biolink:NamedThing maintenance of membrane potential in photoreceptor cell by rhodopsin mediated signaling Maintenance of the excited state of a photoreceptor cell to produce a steady-state current as a result of signals generated by rhodopsin activation by a photon. tmpzr1t_l9r_go_relaxed.owl maintenance of rhodopsin mediated signalling|maintenance of rhodopsin mediated signaling biological_process owl:Class GO:0035653 biolink:NamedThing clathrin-coated vesicle cargo loading, AP-1-mediated Formation of a macromolecular complex between proteins of the AP-1 adaptor complex and proteins and/or lipoproteins that are going to be transported by a clathrin-coated vesicle. The AP-1 adaptor protein complex is a component of the cytoplasmic coat found on clathrin-coated vesicles, and binds to sorting signals of cargo to facilitate their trafficking. tmpzr1t_l9r_go_relaxed.owl cargo loading into clathrin-coated vesicle, AP-1-mediated bf 2011-01-25T11:01:38Z biological_process owl:Class GO:0140700 biolink:NamedThing 3',2'-cyclic GMP-AMP synthase activity Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic G-P(3'-5')A-P(2'-5') (cyclic 3',2' GAMP). tmpzr1t_l9r_go_relaxed.owl 3',2' cyclic-GMP-AMP synthase activity|3',2'-cyclic GAMP synthase activity https://github.com/geneontology/go-ontology/issues/21980 pg 2021-08-27T05:11:54Z molecular_function owl:Class GO:0047108 biolink:NamedThing (R)-3-hydroxyacid-ester dehydrogenase activity Catalysis of the reaction: ethyl (R)-3-hydroxyhexanoate + NADP(+) = ethyl 3-oxohexanoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (R)-3-hydroxyacid ester dehydrogenase activity|3-oxo ester (R)-reductase activity|ethyl-(R)-3-hydroxyhexanoate:NADP+ 3-oxidoreductase activity RHEA:24352|MetaCyc:1.2.1.55-RXN|KEGG_REACTION:R04105|EC:1.1.1.279 Note that this term was EC:1.2.1.55. molecular_function owl:Class GO:0001571 biolink:NamedThing non-tyrosine kinase fibroblast growth factor receptor activity Combining with fibroblast growth factor (FGF) and transmitting the signal from one side of the membrane to the other by a mechanism independent of tyrosine kinase activity. tmpzr1t_l9r_go_relaxed.owl non-tyrosine kinase FGF receptor activity|non-tyrosine kinase FGFR activity molecular_function owl:Class GO:1905316 biolink:NamedThing superior endocardial cushion morphogenesis The developmental process by which a superior endocardial cushion is generated and organized. tmpzr1t_l9r_go_relaxed.owl dorsal endocardial cushion morphogenesis rl 2016-07-12T14:08:35Z biological_process owl:Class GO:0031011 biolink:NamedThing Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity. tmpzr1t_l9r_go_relaxed.owl INO80 chromatin remodeling complex cellular_component owl:Class GO:0033062 biolink:NamedThing Rhp55-Rhp57 complex A conserved heterodimeric DNA recombinase mediator complex that contains the RecA family proteins Rhp55p and Rph57 in Schizosaccharomyces, or orthologs thereof (e.g. Rad55p and Rad57p in Saccharomyces). tmpzr1t_l9r_go_relaxed.owl Rad55-Rad57 complex cellular_component owl:Class GO:0048166 biolink:NamedThing mature follicle stage The stage in oogenesis when the antrum is swollen with follicular fluid. The ovum is ready to erupt from the ovary and is arrested at metaphase of the second meiotic division. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 9 biological_process owl:Class GO:0106286 biolink:NamedThing (E)-caffeate-CoA ligase activity Catalysis of the reaction: (E)-caffeate + ATP + CoA = (E)-caffeoyl-CoA + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:36299 hjd 2020-07-30T14:26:08Z molecular_function owl:Class GO:0018565 biolink:NamedThing dihydroxydibenzothiophene dioxygenase activity Catalysis of the reaction: 1,2-dihydroxydibenzothiophene + O2 = cis-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0162 molecular_function owl:Class GO:0070333 biolink:NamedThing alpha6-beta4 integrin-Shc-Grb2 complex A protein complex that consists of an alpha6-beta4 integrin complex bound to the adaptor proteins Shc and Grb2. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB4-SHC-GRB2 complex cellular_component owl:Class GO:0062173 biolink:NamedThing brexanolone metabolic process The chemical reactions and pathways by which living organisms transform brexanolone. tmpzr1t_l9r_go_relaxed.owl allotetrahydroprogesterone metabolic process|allotetrahydroprogesterone metabolism|allopregnanolone metabolism|brexanolone metabolism|allopregnanolone metabolic process dph 2019-11-18T19:42:45Z biological_process owl:Class GO:0018778 biolink:NamedThing DL-2 haloacid dehalogenase activity Catalysis of the reaction: trichloroacetate + 2 H2O = 3 H+ + 3 Cl- + oxalate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0382|EC:3.8.1.10|MetaCyc:RXN-9150 molecular_function owl:Class GO:0098630 biolink:NamedThing aggregation of unicellular organisms The clustering together of unicellular organisms in suspension form aggregates. tmpzr1t_l9r_go_relaxed.owl aggregation of single cell organisms biological_process owl:Class GO:0018222 biolink:NamedThing peptidyl-L-cysteine methyl disulfide biosynthetic process from peptidyl-cysteine The modification of peptidyl-cysteine to form peptidyl-L-cysteine methyl disulfide. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-cysteine methyl disulfide synthesis from peptidyl-cysteine|peptidyl-L-cysteine methyl disulfide formation from peptidyl-cysteine|peptidyl-L-cysteine methyl disulphide biosynthetic process from peptidyl-cysteine|peptidyl-L-cysteine methyl disulfide anabolism from peptidyl-cysteine|peptidyl-L-cysteine methyl disulphide biosynthesis from peptidyl-cysteine RESID:AA0101 biological_process owl:Class GO:0033612 biolink:NamedThing receptor serine/threonine kinase binding Binding to a receptor that possesses protein serine/threonine kinase activity. tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein serine/threonine kinase ligand binding molecular_function owl:Class GO:0004938 biolink:NamedThing alpha2-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha2-adrenergic receptors; the activity involves transmitting the signal to the Gi alpha subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl alpha2 adrenoceptor molecular_function owl:Class GO:0036472 biolink:NamedThing suppression by virus of host protein-protein interaction Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of interaction between host proteins. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host protein interaction|suppression by virus of host protein:protein interaction|suppression by virus of host protein:protein binding|suppression by virus of host protein binding bf 2014-07-21T11:18:51Z biological_process owl:Class GO:0045522 biolink:NamedThing interleukin-26 receptor binding Binding to an interleukin-26 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-26 receptor ligand|IL-26 molecular_function owl:Class GO:0061953 biolink:NamedThing mRNA (adenine-N1-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + adenine in mRNA = S-adenosyl-L-homocysteine + N(1)-methyladenine in mRNA. tmpzr1t_l9r_go_relaxed.owl dph 2017-11-08T13:26:35Z molecular_function owl:Class GO:0002383 biolink:NamedThing immune response in brain or nervous system An immune response taking place in the brain or nervous system. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071284 biolink:NamedThing cellular response to lead ion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-10T04:00:41Z biological_process owl:Class GO:0046441 biolink:NamedThing D-lysine metabolic process The chemical reactions and pathways involving D-lysine, the D-enantiomer of lysine; i.e. (2R)-2,6-diaminohexanoic acid. tmpzr1t_l9r_go_relaxed.owl D-lysine metabolism biological_process owl:Class GO:0034873 biolink:NamedThing thioacetamide S-oxygenase activity Catalysis of the reaction: thioacetamide + O2 + 2 H+ + 2 e- = thioacetamide S-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1312 molecular_function owl:Class GO:0034317 biolink:NamedThing nicotinic acid riboside kinase activity Catalysis of the reaction: ATP + nicotinic acid riboside = ADP + nicotinic acid mononucleotide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8443 molecular_function owl:Class GO:0071032 biolink:NamedThing nuclear mRNA surveillance of mRNP export The set of processes involved in identifying and degrading incorrectly formed or aberrant nuclear mRNPs docked at the nuclear pore complex prior to export to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl nuclear mRNA catabolic process of mRNAs in aberrant mRNPs|nuclear mRNA quality control of mRNAs in aberrant mRNPs krc 2009-07-28T04:31:57Z biological_process owl:Class GO:1903544 biolink:NamedThing response to butyrate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butyrate stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-10-17T13:57:25Z biological_process owl:Class GO:0070090 biolink:NamedThing metaphase plate The intracellular plane, located halfway between the poles of the spindle, where chromosomes align during metaphase of mitotic or meiotic nuclear division. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042966 biolink:NamedThing biotin carboxyl carrier protein biosynthetic process The chemical reactions and pathways resulting in the formation of the biotin carboxyl carrier protein, a subunit of acetyl-coenzyme A carboxylase. tmpzr1t_l9r_go_relaxed.owl biotin carboxyl carrier protein synthesis|BCCP biosynthetic process|biotin carboxyl carrier protein formation|biotin carboxyl carrier protein anabolism|BCCP biosynthesis|biotin carboxyl carrier protein biosynthesis biological_process owl:Class GO:0070721 biolink:NamedThing ISGF3 complex A transcription factor complex that consists of a Stat1-Stat2 heterodimer and the IRF9 protein. tmpzr1t_l9r_go_relaxed.owl interferon-stimulated gene factor 3 transcription complex mah 2009-06-10T05:22:05Z cellular_component owl:Class GO:0019593 biolink:NamedThing mannitol biosynthetic process The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. tmpzr1t_l9r_go_relaxed.owl mannitol formation|mannitol synthesis|mannitol biosynthesis|mannitol anabolism MetaCyc:PWY-3881 biological_process owl:Class GO:0120091 biolink:NamedThing jasmonic acid hydrolase Catalyzes the hydroxylation of jasmonic acid to 12OH-jasmonic acid. tmpzr1t_l9r_go_relaxed.owl 2-oxoglutarate dioxygenase krc 2017-08-18T23:25:52Z molecular_function owl:Class GO:0008418 biolink:NamedThing protein-N-terminal asparagine amidohydrolase activity Catalysis of the reaction: protein-L-asparagine + H2O = protein-L-aspartate + NH3. This reaction is the deamidation of an N-terminal asparagine residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008270 biolink:NamedThing zinc ion binding Binding to a zinc ion (Zn). tmpzr1t_l9r_go_relaxed.owl zinc binding|Zn binding molecular_function owl:Class GO:0034737 biolink:NamedThing ergosterol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + ergosterol = CoA + ergosterol ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0110051 biolink:NamedThing metabolite repair A cellular process that, through single- or multi-step enzymatic reactions, repairs useless or toxic endogenous compounds, formed as by-products of primary metabolism, by converting them into useful metabolites. tmpzr1t_l9r_go_relaxed.owl kmv 2017-09-08T15:16:01Z biological_process owl:Class GO:1902984 biolink:NamedThing pre-replicative complex assembly involved in premeiotic DNA replication Any pre-replicative complex assembly involved in meiotic cell cycle DNA replication. tmpzr1t_l9r_go_relaxed.owl pre-replicative complex assembly involved in meiotic cell cycle DNA replication|pre-replicative complex assembly involved in meiosis|pre-RC complex assembly involved in meiosis|pre-replicative complex formation involved in meiosis|nuclear pre-replicative complex assembly involved in meiotic cell cycle jl 2014-05-06T20:33:28Z biological_process owl:Class GO:0035866 biolink:NamedThing alphav-beta3 integrin-PKCalpha complex A protein complex that consists of an alphav-beta3 integrin complex bound to protein kinase C alpha. tmpzr1t_l9r_go_relaxed.owl alphav-beta3 integrin-PKCa complex|alphav-beta3 integrin-protein kinase C alpha complex bf 2011-05-25T03:03:59Z cellular_component owl:Class GO:0004488 biolink:NamedThing methylenetetrahydrofolate dehydrogenase (NADP+) activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH. tmpzr1t_l9r_go_relaxed.owl 5,10-methylenetetrahydrofolate:NADP+ oxidoreductase activity|5,10-methylenetetrahydrofolate:NADP oxidoreductase activity RHEA:22812|KEGG_REACTION:R01220|EC:1.5.1.5|MetaCyc:METHYLENETHFDEHYDROG-NADP-RXN molecular_function owl:Class GO:0004486 biolink:NamedThing methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NAD(P)+ = 5,10-methenyltetrahydrofolate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 5,10-methylene-THF dehydrogenase activity|N5,N10-methylenetetrahydrofolate dehydrogenase activity Reactome:R-HSA-200644|Reactome:R-HSA-200718|EC:1.5.1.5 molecular_function owl:Class GO:0036122 biolink:NamedThing BMP binding Binding to a member of the bone morphogenetic protein (BMP) family. tmpzr1t_l9r_go_relaxed.owl bone morphogenetic protein binding bf 2012-02-20T02:59:34Z molecular_function owl:Class GO:1990338 biolink:NamedThing laminin-14 complex A laminin complex composed of alpha4, beta2 and gamma3 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-423 bhm 2014-03-20T23:37:11Z cellular_component owl:Class GO:0047353 biolink:NamedThing N-methylphosphoethanolamine cytidylyltransferase activity Catalysis of the reaction: N-methylethanolamine phosphate + CTP = CDP-N-methylethanolamine + diphosphate. tmpzr1t_l9r_go_relaxed.owl monomethylethanolamine phosphate cytidylyltransferase activity|CTP:N-methylphosphoethanolamine cytidylyltransferase activity|CTP:P-MEA cytidylyltransferase activity|CTP:N-methylethanolamine-phosphate cytidylyltransferase activity MetaCyc:2.7.7.57-RXN|EC:2.7.7.57|RHEA:10576|KEGG_REACTION:R03375 molecular_function owl:Class GO:0047202 biolink:NamedThing sinapoylglucose-choline O-sinapoyltransferase activity Catalysis of the reaction: 1-O-sinapoyl-beta-D-glucose + choline = O-sinapoylcholine + D-glucose. tmpzr1t_l9r_go_relaxed.owl sinapine synthase activity|1-O-(4-hydroxy-3,5-dimethoxycinnamoyl)-beta-D-glucose:choline 1-O-(4-hydroxy-3,5-dimethoxycinnamoyl)transferase activity MetaCyc:2.3.1.91-RXN|RHEA:12024|KEGG_REACTION:R03075|EC:2.3.1.91 molecular_function owl:Class GO:0071116 biolink:NamedThing alpha6-beta1 integrin-CYR61 complex A protein complex that consists of an alpha6-beta1 integrin complex bound to CYR61, a cysteine-rich protein involved in angiogenesis. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB1-CYR61 complex mah 2009-11-13T02:19:23Z cellular_component owl:Class GO:0047638 biolink:NamedThing albendazole monooxygenase activity Catalysis of the reaction: albendazole + H(+) + NADPH + O(2) = albendazole S-oxide + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl albendazole sulfoxidase activity|albendazole oxidase activity|albendazole,NADPH:oxygen oxidoreductase (sulfoxide-forming) EC:1.14.13.32|KEGG_REACTION:R03712|RHEA:10796|MetaCyc:ALBENDAZOLE-MONOOXYGENASE-RXN molecular_function owl:Class GO:0008815 biolink:NamedThing citrate (pro-3S)-lyase activity Catalysis of the reaction: citrate = acetate + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl citrate aldolase activity|citritase activity|citrate lyase activity|citridesmolase activity|citric aldolase activity|citrate oxaloacetate-lyase [(pro-3S)-CH2COO-->acetate]|citratase activity|citrate lyase|citrate oxaloacetate-lyase activity|citrase activity KEGG_REACTION:R00362|EC:4.1.3.6|RHEA:10760|MetaCyc:CITLY-RXN molecular_function owl:Class GO:0047258 biolink:NamedThing sphingosine beta-galactosyltransferase activity Catalysis of the reaction: sphingosine + UDP-D-galactose = H(+) + psychosine + UDP. tmpzr1t_l9r_go_relaxed.owl psychosine-UDP galactosyltransferase activity|UDPgalactose:sphingosine 1-beta-galactotransferase activity|psychosine-uridine diphosphate galactosyltransferase activity|UDP-galactose:sphingosine 1-beta-galactotransferase activity|galactosyl-sphingosine transferase activity|UDPgalactose:sphingosine O-galactosyl transferase activity|uridine diphosphogalactose-sphingosine beta-galactosyltransferase activity RHEA:19485|KEGG_REACTION:R01928|MetaCyc:2.4.1.23-RXN|EC:2.4.1.23 molecular_function owl:Class GO:0050245 biolink:NamedThing quercitrinase activity Catalysis of the reaction: H(2)O + quercitrin = L-rhamnose + quercetin. tmpzr1t_l9r_go_relaxed.owl quercitrin 3-L-rhamnohydrolase activity KEGG_REACTION:R02436|MetaCyc:QUERCITRINASE-RXN|RHEA:17465|EC:3.2.1.66 molecular_function owl:Class GO:0034851 biolink:NamedThing 2,4,4-trimethyl-3-oxopentanoyl-CoA 2-C-propanoyl transferase activity Catalysis of the reaction: 2,4,4-trimethyl-3-oxopentanoyl-CoA + CoASH = pivalyl-CoA + propanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1274 molecular_function owl:Class GO:0047994 biolink:NamedThing hydroxymethylglutaryl-CoA hydrolase activity Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA + H(2)O = 3-hydroxy-3-methylglutarate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl hydroxymethylglutaryl coenzyme A deacylase activity|hydroxymethylglutaryl coenzyme A hydrolase activity|3-hydroxy-3-methylglutaryl-CoA hydrolase activity|(S)-3-hydroxy-3-methylglutaryl-CoA hydrolase activity|beta-hydroxy-beta-methylglutaryl coenzyme A hydrolase activity|beta-hydroxy-beta-methylglutaryl coenzyme A deacylase activity RHEA:16305|EC:3.1.2.5|MetaCyc:HYDROXYMETHYLGLUTARYL-COA-HYDROLASE-RXN|KEGG_REACTION:R02083 molecular_function owl:Class GO:0072166 biolink:NamedThing posterior mesonephric tubule development The progression of the posterior mesonephric tubule over time, from its initial formation to the mature structure. The posterior mesonephric tubule is an epithelial tube that is part of the mesonephros. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-26T01:47:50Z biological_process owl:Class GO:0051334 biolink:NamedThing meiosis I nuclear membrane reassembly The reformation of the nuclear membranes during meiosis I. tmpzr1t_l9r_go_relaxed.owl meiosis I nuclear envelope reassembly https://github.com/geneontology/go-ontology/issues/20636 biological_process owl:Class GO:0071518 biolink:NamedThing autoinducer-2 kinase activity Catalysis of the reaction: 4,5-dihydroxy-pentane-2,3-dione + ATP = 5-phospho-4-hydroxy-pentane-2,3-dione (P-DPD) + ADP. tmpzr1t_l9r_go_relaxed.owl 4,5-dihydroxy-pentane-2,3-dione kinase activity MetaCyc:RXN0-5461|RHEA:15377 mah 2010-01-06T05:08:17Z molecular_function owl:Class GO:1990467 biolink:NamedThing NuA3a histone acetyltransferase complex A NuA3 complex that catalyzes the acetylation of Histone H3. In S. cerevisiae, this complex consists of Eaf6p, Nto1p, Sas3p, Taf14p, Yng1p and associates with H3K4me3 using Yng1p. tmpzr1t_l9r_go_relaxed.owl rb 2014-08-25T23:07:45Z cellular_component owl:Class GO:1904784 biolink:NamedThing NLRP1 inflammasome complex assembly The aggregation, arrangement and bonding together of a set of components to form a NLRP1 inflammasome complex. tmpzr1t_l9r_go_relaxed.owl NALP1 inflammasome complex assembly|NALP1 inflammasome complex formation|NLRP1 inflammasome complex formation https://github.com/geneontology/go-ontology/issues/21092 The aggregation, arrangement and bonding together of a set of components to form the NLRP1 inflammasome complex, occurring at the level of an individual cell. ae 2015-11-02T09:39:44Z biological_process owl:Class GO:0016689 biolink:NamedThing manganese peroxidase activity Catalysis of the reaction: 2 Mn2+ + 2 H+ + hydrogen peroxide = 2 Mn3+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl Mn-dependent (NADH-oxidizing) peroxidase activity|Mn-dependent peroxidase activity|Mn(II):hydrogen-peroxide oxidoreductase activity|peroxidase-M2 RHEA:22776|EC:1.11.1.13|MetaCyc:MANGANESE-PEROXIDASE-RXN molecular_function owl:Class GO:0031588 biolink:NamedThing nucleotide-activated protein kinase complex A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae). tmpzr1t_l9r_go_relaxed.owl Snf1 kinase complex|ADP-activated protein kinase complex|SNF1/AMPK protein kinase complex|5'-AMP-activated protein kinase complex|AMPK complex|Snf1 serine/threonine protein kinase complex|AMP-activated protein kinase complex cellular_component owl:Class GO:0002172 biolink:NamedThing high-affinity IgM receptor activity Combining with high affinity with an immunoglobulin of an IgM isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl high affinity IgM receptor activity hjd 2010-05-06T05:03:26Z molecular_function owl:Class GO:0050311 biolink:NamedThing sulfite reductase (ferredoxin) activity Catalysis of the reaction: hydrogen sulfide + 3 oxidized ferredoxin + 3 H2O = sulfite + 3 reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl sulphite reductase (ferredoxin) activity|ferredoxin-sulfite reductase activity|hydrogen-sulfide:ferredoxin oxidoreductase activity MetaCyc:SULFITE-REDUCTASE-FERREDOXIN-RXN|EC:1.8.7.1|RHEA:23132 molecular_function owl:Class GO:0102135 biolink:NamedThing (22S)-22-hydroxy-campest-4-en-3-one C-23 hydroxylase activity Catalysis of the reaction: H+ + (22S)-22-hydroxycampest-4-en-3-one + NADPH + O2 <=> (22R,23R)-22,23-dihydroxy-campest-4-en-3-one + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11530 molecular_function owl:Class GO:0102543 biolink:NamedThing epsilon-rhodomycinone methylesterase activity Catalysis of the reaction: epsilon-rhodomycinone + H2O <=> 15-demethoxy-epsilon-rhodomycinone + methanol + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.95|MetaCyc:RXN-14865 molecular_function owl:Class GO:0043885 biolink:NamedThing carbon-monoxide dehydrogenase (ferredoxin) activity Catalysis of the reaction: CO + H2O + oxidized ferredoxin = CO2 + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl CO-dehydrogenase (ferredoxin) activity|carbon-monoxide:(acceptor) oxidoreductase activity|carbon-monoxide dehydrogenase activity|CO-dehydrogenase activity|carbon monoxide dehydrogenase activity|CODH|CO dehydrogenase activity|carbon monoxide dehydrogenase (ferredoxin) activity|carbon-monoxide,water:ferredoxin oxidoreductase activity MetaCyc:CARBON-MONOXIDE-DEHYDROGENASE-RXN|EC:1.2.7.4 molecular_function owl:Class GO:0097661 biolink:NamedThing SCF-Ctf13 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Ctf13 in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:25:56Z cellular_component owl:Class GO:0036148 biolink:NamedThing phosphatidylglycerol acyl-chain remodeling Remodeling the acyl chains of phosphatidylglycerol, through sequential deacylation and re-acylation reactions, to generate phosphatidylglycerol containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-14T01:14:23Z biological_process owl:Class GO:0090719 biolink:NamedThing adaptive immune effector response involving T cells and B lineage cells An adaptive immune effector response involving T cells and B lineage cells. In the case of B lineage cells, the effector cells are the antibody secreting plasma cells whereas for T cells the effector cells may be helper T cells or cytotoxic T cells. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-11T12:43:26Z biological_process owl:Class GO:0046754 biolink:NamedThing viral exocytosis The exit of enveloped or unenveloped virion particles from the host cell by exocytosis, without causing cell lysis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070031 biolink:NamedThing alphav-beta5 integrin-osteopontin complex A protein complex that consists of an alphav-beta5 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB5-SPP1 complex cellular_component owl:Class GO:0070636 biolink:NamedThing nicotinic acid riboside hydrolase activity Catalysis of the reaction: nicotinic acid riboside + H2O = nicotinic acid + D-ribose. tmpzr1t_l9r_go_relaxed.owl nicotinate ribonucleoside hydrolase activity|D-ribosylnicotinate hydrolase activity|D-ribosylnicotinic acid hydrolase activity|nicotinate riboside hydrolase activity|nicotinic acid ribonucleoside hydrolase activity mah 2009-05-07T02:12:00Z molecular_function owl:Class GO:0036133 biolink:NamedThing 11-hydroxythromboxane B2 dehydrogenase activity Catalysis of the reaction: thromboxane B2 + NAD+ = 11-dehydro-thromboxane B2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD dependent 11-hydroxythromboxane B2 dehydrogenase activity RHEA:52312|KEGG_REACTION:R05060|Reactome:R-HSA-2161732 Note that the KEGG_REACTION:R05060 reaction does not stipulate the acceptor group, and is therefore slightly more general than the activity described by GO:0036133. bf 2012-03-05T11:05:09Z molecular_function owl:Class GO:0016438 biolink:NamedThing tRNA-queuosine beta-mannosyltransferase activity Catalysis of the reaction: GDP-mannose + tRNA(Asp)-queuosine = GDP + tRNA(Asp)-O-5''-beta-D-mannosylqueuosine. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:tRNAAsp-queuosine O-5''-beta-D-mannosyltransferase activity RHEA:12885|EC:2.4.1.110|MetaCyc:2.4.1.110-RXN molecular_function owl:Class GO:0043696 biolink:NamedThing dedifferentiation The process in which a specialized structure (cell, tissue or organ) loses structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these structures can revert back to the features of their ancestors. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Cellular_differentiation#Dedifferentiation biological_process owl:Class GO:0048163 biolink:NamedThing scattered antral spaces stage The stage in oogenesis when antral spaces begin to form in the follicle cells. Mitochondria form centers for yolk concentration. tmpzr1t_l9r_go_relaxed.owl mammalian oogenesis stage 6 biological_process owl:Class GO:1903213 biolink:NamedThing protein localization to subtelomeric heterochromatin A process in which a protein is transported to, or maintained in, a location within a subtelomeric heterochromatin. tmpzr1t_l9r_go_relaxed.owl protein localisation in subtelomeric heterochromatin|protein localisation to subtelomeric heterochromatin|protein localization in subtelomeric heterochromatin|protein localisation to telomeric heterochromatin|protein localization to telomeric heterochromatin mah 2013-07-31T15:04:26Z GO:1990152 biological_process owl:Class GO:1990726 biolink:NamedThing Lsm1-7-Pat1 complex A conserved, heteroheptameric, cytoplasmic protein complex composed of Lsm1, Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Pat1, or orthologs thereof, that shows a strong binding preference for oligoadenylated RNAs over polyadenylated RNAs. May bind further associated proteins. Facilitates the deadenylation-dependent decapping of mRNA in the P-body thereby regulating mRNA decay and subsequent degradation by the 5' to 3' pathway. tmpzr1t_l9r_go_relaxed.owl pr 2015-04-08T09:22:36Z cellular_component owl:Class GO:0005080 biolink:NamedThing protein kinase C binding Binding to protein kinase C. tmpzr1t_l9r_go_relaxed.owl PKC binding|protein kinase C alpha binding|protein kinase C delta binding|PKC eta binding|PKC alpha binding|PKC delta binding|protein kinase C eta binding GO:0072569|GO:0072568|GO:0097024 molecular_function owl:Class GO:0070126 biolink:NamedThing mitochondrial translational termination The process resulting in the release of a polypeptide chain from the ribosome in a mitochondrion, usually in response to a termination codon (note that mitochondria use variants of the universal genetic code that differ between different taxa). tmpzr1t_l9r_go_relaxed.owl mitochondrial translation termination biological_process owl:Class GO:0018392 biolink:NamedThing glycoprotein 3-alpha-L-fucosyltransferase activity Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP-L-fucose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP + H(+). tmpzr1t_l9r_go_relaxed.owl GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of 4-N-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 3-alpha-L-fucosyl-transferase activity|GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,3-fucosyltransferase activity|GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fuc-alpha-1->6-GlcNAc)-Asn-peptide) alpha-1->3-fucosyltransferase activity|GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fucalpha1->6GlcNAc)-Asn-peptide) alpha1->3-fucosyltransferase activity|GDP-L-Fuc:Asn-linked GlcNAc alpha-1,3-fucosyltransferase activity|GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of N4-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 3-alpha-L-fucosyl-transferase activity|GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-1,3-fucosyltransferase activity|GDP-L-fucose:asparagine-linked N-acetylglucosamine alpha(1,3)-fucosyltransferase activity|GDP-L-Fuc:Asn-linked GlcNAc alpha1,3-fucosyltransferase activity|GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fucalpha1->6-GlcNAc)-Asn-peptide) alpha1->3-fucosyltransferase activity EC:2.4.1.214|KEGG_REACTION:R06015|MetaCyc:2.4.1.214-RXN|RHEA:24444 molecular_function owl:Class GO:0035748 biolink:NamedThing myelin sheath abaxonal region The region of the myelin sheath furthest from the axon. tmpzr1t_l9r_go_relaxed.owl bf 2011-03-23T10:16:14Z cellular_component owl:Class GO:0006187 biolink:NamedThing dGTP biosynthetic process from dGDP The chemical reactions and pathways resulting in the formation of dGTP, deoxyguanosine triphosphate (2'-deoxyguanosine 5'-triphosphate) from other compounds, including gGDP, deoxyguanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl dGTP formation from dGDP|dGTP synthesis from dGDP|dGTP anabolism from dGDP biological_process owl:Class GO:0110076 biolink:NamedThing negative regulation of ferroptosis Any process that stops, prevents, or reduces the frequency, rate or extent of ferroptosis. tmpzr1t_l9r_go_relaxed.owl kmv 2018-01-11T18:00:05Z biological_process owl:Class GO:1990963 biolink:NamedThing establishment of blood-retinal barrier Establishment of the barrier between the blood and the retina. The blood-retinal barrier is located at two levels, forming an outer barrier in the retinal pigment epithelium and an inner barrier in the endothelial membrane of the retinal vessels. Both these membranes have tight junctions of the 'nonleaky' type. tmpzr1t_l9r_go_relaxed.owl establishment of BRB|establishment of blood-retina barrier sl 2016-06-07T21:17:55Z biological_process owl:Class GO:0060006 biolink:NamedThing angular vestibuloocular reflex A vestibular reflex by which a response to an angular acceleration stimulus begins with an afferent nerve impulse from a receptor in the semi-circular canal and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0016018 biolink:NamedThing cyclosporin A binding Binding to cyclosporin A, a cyclic undecapeptide that contains several N-methylated and unusual amino acids. tmpzr1t_l9r_go_relaxed.owl cyclophilin molecular_function owl:Class GO:0102573 biolink:NamedThing aminodeoxyfutalosine synthase activity Catalysis of the reaction: 3-[(1-carboxylatovinyl)oxy]benzoate(2-) + S-adenosyl-L-methionine + H2O <=> aminodeoxyfutalosinate + L-methionine + hydrogencarbonate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15264|RHEA:33075|EC:2.5.1.120 molecular_function owl:Class GO:0035001 biolink:NamedThing dorsal trunk growth, open tracheal system Growth of epithelial tubes that originate from pits in an open tracheal system and grow towards each other to meet and form a continuous open tube called the dorsal trunk. The dorsal trunk extends from the anterior spiracle to the posterior spiracle of the larva and forms the main airway of the insect tracheal system. tmpzr1t_l9r_go_relaxed.owl dorsal trunk growth biological_process owl:Class GO:1904176 biolink:NamedThing carbon phosphorus lyase complex A protein complex which is capable of carbon phosphorus lyase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PhnJ in E. coli (P16688) in PMID:22089136 (inferred from direct assay). bhm 2015-04-29T08:17:13Z cellular_component owl:Class GO:0047500 biolink:NamedThing (+)-borneol dehydrogenase activity Catalysis of the reaction: (+)-borneol + NAD(+) = (1R, 4R)-camphor + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (+)-borneol:NAD+ oxidoreductase activity|bicyclic monoterpenol dehydrogenase activity RHEA:17329|KEGG_REACTION:R02944|EC:1.1.1.198|MetaCyc:+-BORNEOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0097717 biolink:NamedThing copper ion transport across blood-cerebrospinal fluid barrier The directed movement of copper (Cu) ions passing through the blood-cerebrospinal fluid barrier. tmpzr1t_l9r_go_relaxed.owl copper ion transport across blood/CSF barrier|copper ion transport across BCB|copper ion transport across BCSFB|copper ion transport across blood/cerebrospinal fluid barrier|copper ion transport across blood-CSF barrier pr 2016-08-23T14:37:33Z biological_process owl:Class GO:0018775 biolink:NamedThing 2-hydroxymuconate-semialdehyde hydrolase activity Catalysis of the reaction: 2-hydroxymuconate semialdehyde + H2O = formate + 2-oxopent-4-enoate. tmpzr1t_l9r_go_relaxed.owl 2-hydroxymuconate-semialdehyde formylhydrolase activity|HOD hydrolase activity|2-hydroxymuconic semialdehyde hydrolase activity|HMSH MetaCyc:3.7.1.9-RXN|EC:3.7.1.9|RHEA:14549|UM-BBD_enzymeID:e0139 molecular_function owl:Class GO:0033412 biolink:NamedThing UAG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UAG codon. tmpzr1t_l9r_go_relaxed.owl TAG codon-amino acid adaptor activity Note that in the standard genetic code, TAG is a stop codon (amber) and is not normally read by a tRNA. molecular_function owl:Class GO:0031992 biolink:NamedThing energy transducer activity The biological transducer activity that accepts energy and converts it to another form, often by transfer to another molecule within the cell. tmpzr1t_l9r_go_relaxed.owl photon capture|light harvesting activity molecular_function owl:Class GO:0043732 biolink:NamedThing 6-hydroxynicotinate dehydrogenase activity Catalysis of the reaction: 6-hydroxynicotinate + H(2)O + O(2) = 2,6-dihydroxynicotinate + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl 6-hydroxynicotinic acid dehydrogenase activity|6-hydroxynicotinic acid hydroxylase activity|6-hydroxynicotinate hydroxylase activity|6-hydroxynicotinate:O2 oxidoreductase activity KEGG_REACTION:R07221|RHEA:22808|MetaCyc:RXN-7585|EC:1.17.3.3 molecular_function owl:Class GO:0090573 biolink:NamedThing RNA polymerase IV transcription repressor complex A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase IV promoter. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-09T13:26:16Z cellular_component owl:Class GO:0062153 biolink:NamedThing C5-methylcytidine-containing RNA binding Binding to an RNA molecule modified by C5-methylcytidine. tmpzr1t_l9r_go_relaxed.owl C5-methylcytosine-containing RNA binding dph 2019-09-18T14:46:22Z molecular_function owl:Class GO:0030110 biolink:NamedThing HLA-C specific inhibitory MHC class I receptor activity Combining with a MHC class I molecule of the HLA-C subclass to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1905540 biolink:NamedThing interleukin-7 receptor complex A protein complex that binds interleukin-7 (IL-7) and that consists of, at a minimum, an interleukin, an alpha and a gamma chain as well as optional additional kinase subunits. The alpha chain binds IL-7 with high affinity and subsequently binds the cytokine receptor common gamma chain that forms part of multiple interleukin receptors. tmpzr1t_l9r_go_relaxed.owl IL7 receptor complex|IL-7 receptor complex|IL7-receptor complex|IL-7-receptor complex An example of this is IL7R in human (P16871) in PMID:19141282 (inferred from direct assay). bhm 2016-10-10T07:44:05Z cellular_component owl:Class GO:0038185 biolink:NamedThing intracellular bile acid receptor signaling pathway A series of molecular signals initiated by a bile acid binding to an receptor located within a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl nuclear bile acid receptor signaling pathway bf 2013-05-16T11:08:02Z biological_process owl:Class GO:0009024 biolink:NamedThing tagatose-6-phosphate kinase activity Catalysis of the reaction: ATP + D-tagatose 6-phosphate = ADP + D-tagatose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl ATP:D-tagatose-6-phosphate 1-phosphotransferase activity|phosphotagatokinase activity MetaCyc:TAGAKIN-RXN|EC:2.7.1.144|RHEA:12420 molecular_function owl:Class GO:0016152 biolink:NamedThing mercury (II) reductase activity Catalysis of the reaction: H(+) + Hg + NADP(+) = Hg(2+) + NADPH. tmpzr1t_l9r_go_relaxed.owl mercurate(II) reductase activity|Hg:NADP+ oxidoreductase activity|reduced NADP:mercuric ion oxidoreductase activity|mer A|mercury reductase activity|mercury(II) reductase activity|mercuric ion reductase activity|mercuric reductase activity KEGG_REACTION:R02807|UM-BBD_reactionID:r0406|MetaCyc:MERCURY-II-REDUCTASE-RXN|RHEA:23856|EC:1.16.1.1 GO:0018692 molecular_function owl:Class GO:1990662 biolink:NamedThing S100A9 complex A protein complex composed of a S100A9 dimer and capable of binding to toll-like receptor 4 (TLR4) and the receptor for advanced glycation end products (RAGE) initiating signal transduction through NF-kappa-B pathways. Transports arachidonic acid between the cytosol and the NADPH oxidase complex at the plasma membrane in neutrophils as part of an inflammatory signal cascade leading to an oxidative burst. Complexes with microtubules to increase cell motility. tmpzr1t_l9r_go_relaxed.owl S100A9 homodimer An example of this is S100A9 in human (UniProt symbol P06702) in PMID:15642721 (inferred from direct assay). bhm 2015-02-25T15:55:48Z cellular_component owl:Class GO:1901703 biolink:NamedThing protein localization involved in auxin polar transport Any protein localization that is involved in auxin polar transport. tmpzr1t_l9r_go_relaxed.owl protein localisation involved in auxin polar transport|establishment and maintenance of protein localization involved in auxin polar transport tb 2012-12-13T19:06:13Z biological_process owl:Class GO:0033874 biolink:NamedThing scymnol sulfotransferase activity Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + 5beta-scymnol = 5beta-scymnol sulfate + adenosine 3',5'-diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R07798|RHEA:15477|EC:2.8.2.32|MetaCyc:2.8.2.32-RXN molecular_function owl:Class GO:0038038 biolink:NamedThing G protein-coupled receptor homodimeric complex A protein complex that contains two G protein-coupled receptors (GPCRs) of the same subtype. Formation of a GPCR homodimer may be important for the transport of newly formed receptors to the cell surface, and the function of the receptor. tmpzr1t_l9r_go_relaxed.owl GPCR homodimer|G-protein coupled receptor homodimer|G-protein coupled receptor homodimeric complex bf 2011-11-02T04:43:53Z cellular_component owl:Class GO:0051841 biolink:NamedThing positive regulation by host of cytolysis of symbiont cells Any process in which an organism activates or increases the frequency, rate or extent of cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up regulation by host of cytolysis of symbiont cells|stimulation by host of cytolysis of symbiont cells|up-regulation by host of cytolysis of symbiont cells|activation by host of cytolysis of symbiont cells|upregulation by host of cytolysis of symbiont cells biological_process owl:Class GO:0035225 biolink:NamedThing determination of genital disc primordium Allocation of embryonic cells to the genital imaginal disc founder populations. Early in development at the blastoderm stage, the anlage of the genital disc of both sexes consists of three primordia: the female genital primoridum lcoated anteriorly, the anal primoridum located posteriorly, and the male gential primordium between the two. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0015044 biolink:NamedThing rubredoxin-NAD+ reductase activity Catalysis of the reaction: reduced rubredoxin + NAD+ = oxidized rubredoxin + NADH + H+. tmpzr1t_l9r_go_relaxed.owl rubredoxin--nicotinamide adenine dinucleotide reductase activity|DPNH-rubredoxin reductase activity|NADH--rubredoxin reductase activity|NADH:rubredoxin oxidoreductase activity|rubredoxin:NAD+ oxidoreductase activity|NADH:rubredoxin reductase activity|NADH--rubredoxin oxidoreductase activity|reduced nicotinamide adenine dinucleotide--rubredoxin reductase activity|dihydronicotinamide adenine dinucleotide--rubredoxin reductase activity|rubredoxin--NAD reductase activity RHEA:18597|MetaCyc:RUBREDOXIN--NAD+-REDUCTASE-RXN|EC:1.18.1.1 molecular_function owl:Class GO:0018732 biolink:NamedThing sulfolactone hydrolase activity Catalysis of the reaction: 4-sulfolactone + OH- = HSO3(-) + maleylacetate. tmpzr1t_l9r_go_relaxed.owl sulpholactone hydrolase activity EC:3.1.1.92|UM-BBD_reactionID:r0583 molecular_function owl:Class GO:0106046 biolink:NamedThing guanine deglycation, glyoxal removal The removal of glyoxal from a glycated guanine, to form glycolate and a deglycated guanine. tmpzr1t_l9r_go_relaxed.owl hjd 2017-08-01T18:19:30Z biological_process owl:Class GO:0140460 biolink:NamedThing response to Gram-negative bacterium Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a Gram-negative bacterium. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19278 pg 2020-04-30T07:34:38Z biological_process owl:Class GO:0016972 biolink:NamedThing thiol oxidase activity Catalysis of the reaction: 4 R'C(R)SH + O2 = 2 R'C(R)S-S(R)CR' + 2 H2O2. tmpzr1t_l9r_go_relaxed.owl thiol:oxygen oxidoreductase activity|sulfhydryl oxidase activity UM-BBD_reactionID:r1293|MetaCyc:THIOL-OXIDASE-RXN|EC:1.8.3.2|RHEA:17357 molecular_function owl:Class GO:0060747 biolink:NamedThing oral incubation A parental behavior in which fertilized eggs are taken into the mouth and held until hatching. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-22T09:08:58Z biological_process owl:Class GO:0070524 biolink:NamedThing 11-beta-hydroxysteroid dehydrogenase (NADP+) activity Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl corticosteroid 11-beta-dehydrogenase activity|beta-hydroxysteroid dehydrogenase RHEA:11388|EC:1.1.1.146|Wikipedia:11beta-hydroxysteroid_dehydrogenase molecular_function owl:Class GO:0102580 biolink:NamedThing cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + UDP-alpha-D-xylose <=> cyanidin 3-O-beta-D-sambubioside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15326|EC:2.4.2.51|RHEA:35443 molecular_function owl:Class GO:0047487 biolink:NamedThing oligogalacturonide lyase activity Catalysis of the reaction: 4-(4-deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate = 2 5-dehydro-4-deoxy-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl oligogalacturonate lyase activity|OGTE|unsaturated oligogalacturonate transeliminase activity RHEA:20269|EC:4.2.2.6|MetaCyc:OLIGOGALACTURONIDE-LYASE-RXN molecular_function owl:Class GO:0008479 biolink:NamedThing queuine tRNA-ribosyltransferase activity Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine. tmpzr1t_l9r_go_relaxed.owl queuine transfer ribonucleate ribosyltransferase activity|tRNA transglycosylase activity|guanine, queuine-tRNA transglycosylase activity|[tRNA]-guanine:queuine tRNA-D-ribosyltransferase activity|tRNA-guanine transglycosylase activity|guanine insertion enzyme activity|tRNA guanine transglycosidase activity|transfer ribonucleate glycosyltransferase activity|Q-insertase activity MetaCyc:QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN|Reactome:R-HSA-6782443|EC:2.4.2.29|RHEA:16633 molecular_function owl:Class GO:1990825 biolink:NamedThing sequence-specific mRNA binding Binding to messenger RNA (mRNA) of a specific nucleotide composition or a specific sequence motif. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T17:42:50Z molecular_function owl:Class GO:0070420 biolink:NamedThing Ku-DNA ligase complex A nonhomologous end joining complex that contains one or more Ku monomers and one or more DNA ligase molecules from the LigC or LigD family, and mediates nonhomologous end joining in bacteria. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0030930 biolink:NamedThing homotetrameric ADPG pyrophosphorylase complex A protein complex composed of four identical subunits that possesses ADPG pyrophosphorylase activity. Examples of this component are found in Bacterial species. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052876 biolink:NamedThing methylamine dehydrogenase (amicyanin) activity Catalysis of the reaction: 2O + methylamine + 2 oxidized [amicyanin] = formaldehyde + 2 H+ + NH4+ + 2 reduced [amicyanin]. tmpzr1t_l9r_go_relaxed.owl primary-amine dehydrogenase|amine dehydrogenase|methylamine dehydrogenase activity|methylamine:amicyanin oxidoreductase (deaminating) activity|MADH activity https://github.com/geneontology/go-ontology/issues/21650 RHEA:30207|KEGG_REACTION:R00606|EC:1.4.9.1|UM-BBD_reactionID:r0075 molecular_function owl:Class GO:0046917 biolink:NamedThing triphosphoribosyl-dephospho-CoA synthase activity Catalysis of the reaction: ATP + 3-dephospho-CoA = 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA + adenine. tmpzr1t_l9r_go_relaxed.owl 2'-(5''-triphosphoribosyl)-3-dephospho-CoA synthase activity|ATP:dephospho-CoA 5-triphosphoribosyl transferase activity|CitG activity|ATP:3-dephospho-CoA 5''-triphosphoribosyltransferase activity RHEA:15117|MetaCyc:2.7.8.25-RXN|EC:2.4.2.52 molecular_function owl:Class GO:0042741 biolink:NamedThing endogenous antibiotic catabolic process The chemical reactions and pathways resulting in the breakdown of an antibiotic that has originated internally within the cell or organism. tmpzr1t_l9r_go_relaxed.owl endogenous antibiotic catabolism|endogenous antibiotic degradation|endogenous antibiotic breakdown biological_process owl:Class GO:0050364 biolink:NamedThing tryptophan dimethylallyltransferase activity Catalysis of the reaction: dimethylallyl diphosphate + L-tryptophan = diphosphate + 4-(3-methylbut-2-enyl)-L-tryptophan. tmpzr1t_l9r_go_relaxed.owl DMAT synthetase activity|dimethylallyl-diphosphate:L-tryptophan dimethylallyltransferase activity|dimethylallylpyrophosphate:tryptophan dimethylallyl transferase activity|dimethylallylpyrophosphate:L-tryptophan dimethylallyltransferase activity|4-(gamma,gamma-dimethylallyl)tryptophan synthase activity|dimethylallyltryptophan synthetase activity RHEA:14173|MetaCyc:TRYPTOPHAN-DIMETHYLALLYLTRANSFERASE-RXN|EC:2.5.1.34 molecular_function owl:Class GO:0005897 biolink:NamedThing interleukin-9 receptor complex A protein complex that binds interleukin-9; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-9 receptor, whereas the beta chain is shared with the receptors for several other interleukins. tmpzr1t_l9r_go_relaxed.owl IL-9 receptor complex cellular_component owl:Class GO:0140474 biolink:NamedThing mitochondrion-endoplasmic reticulum membrane tether activity The binding activity of a molecule that brings together a mitochondrion and an ER membrane either via membrane lipid binding or by interacting with a mitochondrial outer membrane protein, to establish or maintain the localization of the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrion-ER membrane tether activity|ER-mitochondrion membrane tether activity|endoplasmic reticulum-mitochondrion membrane tether activity|mitochondrion-ER membrane adaptor activity|ER-mitochondrion membrane adaptor activity|endoplasmic reticulum-mitochondrion membrane adaptor activity|mitochondrion-endoplasmic reticulum membrane adaptor activity https://github.com/geneontology/go-ontology/issues/19634 pg 2020-06-22T07:01:14Z molecular_function owl:Class GO:0031687 biolink:NamedThing A2A adenosine receptor binding Binding to an A2A adenosine receptor. tmpzr1t_l9r_go_relaxed.owl A2A adenosine receptor ligand molecular_function owl:Class GO:0042248 biolink:NamedThing maintenance of polarity of follicular epithelium The maintenance of an established polarized follicular epithelial sheet. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031616 biolink:NamedThing spindle pole centrosome A centrosome from which one pole of a mitotic or meiotic spindle is organized. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034043 biolink:NamedThing 5-hydroxymethyluracil DNA N-glycosylase activity Catalysis of the removal of 5-hydroxymethyluracil bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar. tmpzr1t_l9r_go_relaxed.owl 5-hmU DNA N-glycosylase activity molecular_function owl:Class GO:0046871 biolink:NamedThing N-acetylgalactosamine binding Binding to N-acetylgalactosamine, 2-acetamido-2-deoxygalactopyranose, the n-acetyl derivative of galactosamine. tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine lectin molecular_function owl:Class GO:0070330 biolink:NamedThing aromatase activity Catalysis of the reduction of an aliphatic ring to yield an aromatic ring. tmpzr1t_l9r_go_relaxed.owl estrogen synthetase activity EC:1.14.14.1|UM-BBD_enzymeID:e0551|MetaCyc:UNSPECIFIC-MONOOXYGENASE-RXN|RHEA:17149 molecular_function owl:Class GO:0106154 biolink:NamedThing perithecium formation The process of producing flask-shaped fruiting bodies, called perithecia. In the ascomycetous fungi such as Neurospora crassa and Sordaria macrospora, these perithecia are formed in the sexual phase and they discharge ascospores through the ostiolum at the tip of the perithecial neck. tmpzr1t_l9r_go_relaxed.owl hjd 2018-09-19T19:12:53Z biological_process owl:Class GO:0044316 biolink:NamedThing cone cell pedicle A specialized axon terminus which is produced by retinal cone cells. Pedicles are large, conical, flat end-feet (8-10 micrometers diameter) of the retinal cone axon that lie more or less side by side on the same plane at the outer edge of the outer plexiform layer (OPL). tmpzr1t_l9r_go_relaxed.owl cone pedicle jl 2010-07-14T01:30:02Z cellular_component owl:Class GO:0007388 biolink:NamedThing posterior compartment specification The process involved in the specification of cell identity in the posterior compartments of the segmented embryo. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034555 biolink:NamedThing 3,3'-dibromobisphenol A reductive dehalogenase activity Catalysis of the reaction: 3,3'-dibromobisphenol A + 2 H+ + 2 e- = 3-monobromobisphenol A + HBr. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0844 molecular_function owl:Class GO:0034277 biolink:NamedThing ent-cassa-12,15-diene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-cassa-12,15-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-copalyl-diphosphate diphosphate-lyase (ent-cassa-12,15-diene-forming) activity EC:4.2.3.28|MetaCyc:RXN-4881|KEGG_REACTION:R09119|RHEA:25532 molecular_function owl:Class GO:0035131 biolink:NamedThing post-embryonic pelvic fin morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the pelvic fin are generated and organized. The pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0080076 biolink:NamedThing caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T03:55:49Z molecular_function owl:Class GO:0047437 biolink:NamedThing 4-oxalocrotonate decarboxylase activity Catalysis of the reaction: 4-oxalocrotonate = CO2 + 2-oxopent-4-enoate. tmpzr1t_l9r_go_relaxed.owl 4-oxalocrotonate carboxy-lyase (2-oxopent-4-enoate-forming)|4-oxalocrotonate carboxy-lyase activity RHEA:24260|EC:4.1.1.77|UM-BBD_reactionID:r1435|MetaCyc:4.1.1.77-RXN molecular_function owl:Class GO:0002346 biolink:NamedThing B cell positive selection Any process in which B cells are selected to survive based on signaling through the B cell antigen receptor. tmpzr1t_l9r_go_relaxed.owl B lymphocyte positive selection|B-lymphocyte positive selection|B-cell positive selection biological_process owl:Class GO:0004155 biolink:NamedThing 6,7-dihydropteridine reductase activity Catalysis of the reaction: NADP+ + 5,6,7,8-tetrahydropteridine = NADPH + H+ + 6,7-dihydropteridine. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydropteridine:NAD(P)H+ oxidoreductase activity|NAD(P)H(2):6,7-dihydropteridine oxidoreductase activity|dihydropteridine reductase (NADH) activity|5,6,7,8-tetrahydropteridine:NAD(P)+ oxidoreductase activity|6,7-dihydropteridine:NAD(P)H oxidoreductase activity|NADPH-dihydropteridine reductase activity|dihydropteridine (reduced nicotinamide adenine dinucleotide) reductase activity|NADPH-specific dihydropteridine reductase activity|DHPR activity|NADH-dihydropteridine reductase activity|dihydropteridine reduction|dihydropteridine reductase activity|NAD(P)H2:6,7-dihydropteridine oxidoreductase activity EC:1.5.1.34|MetaCyc:1.5.1.34-RXN|Reactome:R-HSA-71130 Note that this function was formerly EC:1.6.99.7. molecular_function owl:Class GO:0050370 biolink:NamedThing tyrosine N-monooxygenase activity Catalysis of the reaction: tyrosine + O2 + NADPH + H+ = N-hydroxytyrosine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl L-tyrosine,NADPH:oxygen oxidoreductase (N-hydroxylating)|CYP79A1 activity|tyrosine N-hydroxylase activity RHEA:22464|MetaCyc:TYROSINE-N-MONOOXYGENASE-RXN molecular_function owl:Class GO:0042802 biolink:NamedThing identical protein binding Binding to an identical protein or proteins. tmpzr1t_l9r_go_relaxed.owl isoform-specific homophilic binding|protein homopolymerization molecular_function owl:Class GO:0047810 biolink:NamedThing D-alanine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: D-alanine + 2-oxoglutarate = pyruvate + D-glutamate. tmpzr1t_l9r_go_relaxed.owl D-alanine aminotransferase activity|D-alanine transaminase activity|D-aspartate transaminase activity|D-aspartate aminotransferase activity|D-alanine-D-glutamate transaminase activity|D-amino acid transaminase activity|D-aspartic aminotransferase activity|D-amino acid aminotransferase activity|D-amino-acid transaminase activity EC:2.6.1.21|RHEA:15869|MetaCyc:D-ALANINE-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0097732 biolink:NamedThing 9+2 non-motile cilium A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets plus two central microtubules (and is therefore called a 9+2 axoneme). tmpzr1t_l9r_go_relaxed.owl non-motile 9+2 cilium|9+2 immotile cilium This type of cilia may be present in solitary (e.g. in inner hair cells) or in multiple copies (e.g. in olfactory neurons). pr 2016-09-29T14:07:33Z cellular_component owl:Class GO:0004653 biolink:NamedThing polypeptide N-acetylgalactosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. This reaction is the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis. tmpzr1t_l9r_go_relaxed.owl glycoprotein acetylgalactosaminyltransferase activity|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase activity|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase activity|UDP-N-acetylgalactosamine:protein N-acetylgalactosaminyl transferase activity|uridine diphosphoacetylgalactosamine-glycoprotein acetylgalactosaminyltransferase activity|UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyl-transferase activity|UDP-N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferase activity|UDP-GalNAc:polypeptide N-acetylgalactosaminyl transferase activity|UDP-N-acetylgalactosamine-glycoprotein N-acetylgalactosaminyltransferase activity|UDP-acetylgalactosamine:peptide-N-galactosaminyltransferase activity|polypeptide-N-acetylgalactosamine transferase activity|protein-UDP acetylgalactosaminyltransferase activity|UDP-N-acetylgalactosamine-protein N-acetylgalactosaminyltransferase activity|UDP-acetylgalactosamine-glycoprotein acetylgalactosaminyltransferase activity|UDP-N-acetylgalactosamine:kappa-casein polypeptide N-acetylgalactosaminyltransferase activity EC:2.4.1.41|Reactome:R-HSA-5096532|MetaCyc:2.4.1.41-RXN|Reactome:R-HSA-9683760|Reactome:R-HSA-9694438|Reactome:R-HSA-5096537|Reactome:R-HSA-913675|Reactome:R-HSA-8851619 molecular_function owl:Class GO:0008532 biolink:NamedThing N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-R. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:beta-D-galactosyl-1,4-N-acetyl-D-glucosamine beta-1,3-acetyl-D-glucosaminyltransferase activity|GnTE activity|poly-N-acetyllactosamine extension enzyme activity|UDP-GlcNAc:Galbeta-(1,4)-GlcNAcbeta-r-beta-(1,3)-N-acetylglucosaminyltransferase activity|UDP-GlcNAc:GalR, beta-D-3-N-acetylglucosaminyltransferase activity|UDP-GlcNAc:Galbeta-1,4-GlcNAcbeta-beta-1,3-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->3-acetylglucosaminyltransferase|N-acetyllactosamine beta(1,3)N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-acetyllactosaminide beta-1,3-acetylglucosaminyltransferase|galbeta1->4GlcNAc-R beta1->3 N-acetylglucosaminyltransferase activity MetaCyc:2.4.1.149-RXN|RHEA:14389|EC:2.4.1.149|Reactome:R-HSA-2025724 molecular_function owl:Class GO:0102241 biolink:NamedThing soyasaponin III rhamnosyltransferase activity Catalysis of the reaction: UDP-L-rhamnose + soyasaponin III <=> H+ + UDP + soyasaponin I. tmpzr1t_l9r_go_relaxed.owl RHEA:31491|EC:2.4.1.273|MetaCyc:RXN-12320 molecular_function owl:Class GO:0039618 biolink:NamedThing T=pseudo3 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with pseudo T=3 symmetry. The T=pseudo3 capsid is composed of 12 pentameric and 20 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:809 T=pseudo3 capsids are not T=3 symmetry as described by Caspar and Klug (PMID:14019094) because the basic unit is composed of three different proteins. Since the three subunits are morphologically very similar, the structure is therefore a pseudo T=3. bf 2012-07-18T02:10:02Z cellular_component owl:Class GO:0050452 biolink:NamedThing CoA-glutathione reductase activity Catalysis of the reaction: CoA + glutathione + NADP+ = CoA-glutathione + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl glutathione:NADP+ oxidoreductase (CoA-acylating)|CoA-glutathione reductase (NADPH) activity|NADPH-dependent coenzyme A-SS-glutathione reductase activity|coenzyme A glutathione disulfide reductase activity|coenzyme A disulfide-glutathione reductase activity|NADPH:CoA-glutathione oxidoreductase activity|NADPH2:CoA-glutathione oxidoreductase activity EC:1.8.1.10|MetaCyc:COA-GLUTATHIONE-REDUCTASE-NADPH-RXN|RHEA:14617 molecular_function owl:Class GO:0046843 biolink:NamedThing dorsal appendage formation Establishment of the dorsal filaments, elaborate specializations of the chorion that protrude from the anterior end of the egg and facilitate embryonic respiration. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035059 biolink:NamedThing RCAF complex A protein complex that facilitates the assembly of nucleosomes on to newly synthesized DNA. In Drosophila, the complex comprises ASF1 and histones H3 and H4. tmpzr1t_l9r_go_relaxed.owl replication-coupling assembly factor complex cellular_component owl:Class GO:0002425 biolink:NamedThing tolerance induction in urogenital tract Tolerance induction taking place in the urogenital tract. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019159 biolink:NamedThing nicotinamide-nucleotide amidase activity Catalysis of the reaction: beta-nicotinamide D-ribonucleotide + H2O = beta-nicotinate D-ribonucleotide + NH3. tmpzr1t_l9r_go_relaxed.owl NMN deamidase activity|nicotinamide mononucleotide deamidase activity|nicotinamide-D-ribonucleotide amidohydrolase activity|NMN amidohydrolase|nicotinamide mononucleotide amidohydrolase activity EC:3.5.1.42|RHEA:12400|MetaCyc:NMNAMIDOHYDRO-RXN molecular_function owl:Class GO:0032354 biolink:NamedThing response to follicle-stimulating hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus. tmpzr1t_l9r_go_relaxed.owl response to FSH stimulus|response to follicle-stimulating hormone stimulus|response to follicle stimulating hormone stimulus biological_process owl:Class GO:0008709 biolink:NamedThing cholate 7-alpha-dehydrogenase activity Catalysis of the reaction: cholate + NAD(+) = 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 7alpha-hydroxy steroid dehydrogenase activity|7alpha-hydroxysteroid:NAD+ 7-oxidoreductase activity|7alpha-HSDH|7alpha-hydroxysteroid dehydrogenase activity|7-alpha-hydroxysteroid dehydrogenase activity RHEA:19409|EC:1.1.1.159|KEGG_REACTION:R02792|MetaCyc:7-ALPHA-HYDROXYSTEROID-DEH-RXN molecular_function owl:Class GO:0090595 biolink:NamedThing acetyl-CoA:L-lysine N6-acetyltransferase Catalysis of the reaction: L-lysine + acetyl-CoA = N6-acetyl-L-lysine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl tb 2014-08-21T17:19:06Z molecular_function owl:Class GO:0009721 biolink:NamedThing detection of auxin stimulus The series of events in which an auxin stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of auxin stimulus biological_process owl:Class GO:0003989 biolink:NamedThing acetyl-CoA carboxylase activity Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl coenzyme A carboxylase activity|acetyl-CoA:carbon-dioxide ligase (ADP-forming) Reactome:R-HSA-8876889|RHEA:11308|Reactome:R-HSA-75851|MetaCyc:ACETYL-COA-CARBOXYLTRANSFER-RXN|Reactome:R-HSA-200555|EC:6.4.1.2 molecular_function owl:Class GO:0120122 biolink:NamedThing prolactin metabolic process The chemical reactions and pathways involving prolactin, a protein hormone of the anterior pituitary gland that promotes lactation in response to the suckling stimulus of hungry young mammals. tmpzr1t_l9r_go_relaxed.owl prolactin metabolism krc 2018-01-25T17:28:40Z biological_process owl:Class GO:0050377 biolink:NamedThing UDP-glucose 4,6-dehydratase activity Catalysis of the reaction: UDP-D-glucose = H(2)O + UDP-4-dehydro-6-deoxy-D-glucose. tmpzr1t_l9r_go_relaxed.owl UDPglucose 4,6-dehydratase activity|UDP-D-glucose-4,6-hydrolyase activity|UDPglucose 4,6-hydro-lyase activity|UDP-glucose 4,6-hydro-lyase activity|UDP-glucose 4,6-hydro-lyase (UDP-4-dehydro-6-deoxy-D-glucose-forming)|UDP-D-glucose oxidoreductase activity KEGG_REACTION:R00293|RHEA:21500|MetaCyc:UDP-GLUCOSE-46-DEHYDRATASE-RXN|EC:4.2.1.76 molecular_function owl:Class GO:0047051 biolink:NamedThing D-lactate dehydrogenase (cytochrome c-553) activity Catalysis of the reaction: (R)-lactate + 2 [Fe(III)cytochrome c553] = 2 [Fe(II)cytochrome c553] + 2 H+ + pyruvate. tmpzr1t_l9r_go_relaxed.owl (R)-lactate:ferricytochrome-c-553 2-oxidoreductase activity MetaCyc:1.1.2.5-RXN|RHEA:16465|EC:1.1.2.5 molecular_function owl:Class GO:0047511 biolink:NamedThing (S)-methylmalonyl-CoA hydrolase activity Catalysis of the reaction: (S)-methylmalonyl-CoA + H(2)O = CoA + H(+) + methylmalonate. tmpzr1t_l9r_go_relaxed.owl D-methylmalonyl-coenzyme A hydrolase activity EC:3.1.2.17|MetaCyc:S-METHYLMALONYL-COA-HYDROLASE-RXN|KEGG_REACTION:R02764|RHEA:17345 molecular_function owl:Class GO:1902118 biolink:NamedThing calcidiol binding Binding to calcidiol. tmpzr1t_l9r_go_relaxed.owl 25(OH)D3 binding|25OHD3 binding|calcifediol binding|25-hydroxyvitamin D3 binding|25-hydroxycholecalciferol binding bf 2013-05-15T14:55:58Z molecular_function owl:Class GO:0140617 biolink:NamedThing transvection An epigenetic regulation of transcription by physical interaction between a cis-acting element (enhancer, silencer) of one allele on one chromosome and the promoter of the corresponding allele on the homologous chromosome. Transvection can lead to either gene activation or repression. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21038 pg 2021-03-08T18:30:47Z biological_process owl:Class GO:0071259 biolink:NamedThing cellular response to magnetism Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to magnetic stimulus mah 2009-12-04T03:54:53Z biological_process owl:Class GO:0008860 biolink:NamedThing ferredoxin-NAD+ reductase activity Catalysis of the reaction: reduced ferredoxin + NAD+ = oxidized ferredoxin + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NAD-ferredoxin reductase activity|NADH-ferredoxinTOL reductase (component of toluene dioxygenase)|NADH-ferredoxin reductase activity|ferredoxin-linked NAD reductase activity|ferredoxin-NAD reductase activity|reductase, reduced nicotinamide adenine dinucleotide-ferredoxin|NADH-ferredoxin oxidoreductase activity|ferredoxin:NAD+ oxidoreductase activity|NADH2-ferredoxin oxidoreductase activity|NADH-ferredoxinNAP reductase (component of naphthalene dioxygenase multicomponent enzyme system)|NADH flavodoxin oxidoreductase activity|ferredoxin-nicotinamide adenine dinucleotide reductase activity MetaCyc:FERREDOXIN--NAD+-REDUCTASE-RXN|RHEA:16521|EC:1.18.1.3 molecular_function owl:Class GO:0004158 biolink:NamedThing dihydroorotate oxidase activity Catalysis of the reaction: (S)-dihydroorotate + O(2) = H(2)O(2) + orotate. tmpzr1t_l9r_go_relaxed.owl 4,5-L-dihydroorotate:oxygen oxidoreductase activity|(S)-dihydroorotate:oxygen oxidoreductase activity RHEA:15441 molecular_function owl:Class GO:0103005 biolink:NamedThing 9,10-epoxystearate hydrolase activity Catalysis of the reaction: 9,10-epoxystearate + H2O <=> (9R,10S)-dihydroxystearate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9806 molecular_function owl:Class GO:1990276 biolink:NamedThing RNA 5'-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the 5'-gamma-phosphate in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl pr 2014-01-28T09:44:16Z molecular_function owl:Class GO:0061417 biolink:NamedThing negative regulation of transcription from RNA polymerase II promoter in response to oxidative stress Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-23T01:02:10Z biological_process owl:Class GO:0005873 biolink:NamedThing plus-end kinesin complex Any complex that includes a dimer of molecules from the kinesin superfamily and any associated proteins, and moves towards the plus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0033782 biolink:NamedThing 24-hydroxycholesterol 7alpha-hydroxylase activity Catalysis of the reaction: (24S)-hydroxycholesterol + O2 + reduced [NADPH-hemoprotein reductase] = (24S)-7alpha-dihydroxycholesterol + H+ + H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl 24-cholest-5-ene-3beta,24-diol,NADPH:oxygen oxidoreductase (7alpha-hydroxylating) activity|24-hydroxycholesterol 7alpha-monooxygenase activity https://github.com/geneontology/go-ontology/issues/21412 EC:1.14.14.26|RHEA:46124|KEGG_REACTION:R07208|MetaCyc:1.14.13.99-RXN Formerly EC:1.14.13.99. molecular_function owl:Class GO:0034941 biolink:NamedThing pyrrole-2-carboxylate decarboxylase activity Catalysis of the reaction: pryrole-2-carboxylate + H+ = pyrrole + CO2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0970|EC:4.1.1.93 molecular_function owl:Class GO:0070205 biolink:NamedThing 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity Catalysis of the reaction: 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate = (1R,6R)-2-succinyl-6-hydroxycyclohexa-2,4-diene-1-carboxylate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase activity|YfbB|SHCHC synthase activity|MenH|6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate synthase activity KEGG_REACTION:R08166|RHEA:25597|EC:4.2.99.20|MetaCyc:RXN-9310 molecular_function owl:Class GO:0102380 biolink:NamedThing steviolbioside glucosyltransferase activity (rebaudioside B forming) Catalysis of the reaction: steviolbioside + UDP-alpha-D-glucose = rebaudioside B + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13516 molecular_function owl:Class GO:0008691 biolink:NamedThing 3-hydroxybutyryl-CoA dehydrogenase activity Catalysis of the reaction: (S)-3-hydroxybutanoyl-CoA + NADP+ = 3-acetoacetyl-CoA + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl (S)-3-hydroxybutanoyl-CoA:NADP+ oxidoreductase activity|L(+)-3-hydroxybutyryl-CoA dehydrogenase activity|beta-hydroxybutyryl-CoA dehydrogenase activity|dehydrogenase, L-3-hydroxybutyryl coenzyme A (nicotinamide adenine dinucleotide phosphate)|L-(+)-3-hydroxybutyryl-CoA dehydrogenase activity|beta-hydroxybutyryl coenzyme A dehydrogenase activity|BHBD activity MetaCyc:3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN|RHEA:16197|EC:1.1.1.157 molecular_function owl:Class GO:0003756 biolink:NamedThing protein disulfide isomerase activity Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins. tmpzr1t_l9r_go_relaxed.owl disulphide bond biosynthesis|disulphide bond formation|protein thiol-disulfide exchange|protein disulfide-isomerase|protein thiol-disulphide exchange|S-S rearrangase activity|protein disulfide-isomerase reaction|protein disulphide isomerase activity|protein cysteine-thiol oxidation Reactome:R-HSA-8950113|MetaCyc:5.3.4.1-RXN|Reactome:R-HSA-8950456|EC:5.3.4.1|Reactome:R-HSA-8950183 GO:0006467 molecular_function owl:Class GO:1990225 biolink:NamedThing rhoptry neck Narrow, electron-dense part of the rhoptry that extends through the conoid at the apical tip of an apicomplexan parasite. The rhoptry neck serves as a duct through which the contents of the rhoptry are secreted after attachment to the host has been completed and at the commencement of invasion. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-03T14:19:26Z cellular_component owl:Class GO:0035974 biolink:NamedThing meiotic spindle pole body The microtubule organizing center that forms as part of the meiotic cell cycle; functionally homologous to the animal cell centrosome. tmpzr1t_l9r_go_relaxed.owl bf 2011-08-16T11:37:59Z cellular_component owl:Class GO:0051729 biolink:NamedThing germline cell cycle switching, mitotic to meiotic cell cycle The process in which a germline cell switches cell cycle mode from mitotic to meiotic division. tmpzr1t_l9r_go_relaxed.owl germline meiotic entry|germline initiation of meiotic cell cycle|germline entry into meiosis|germline entry into meiotic cell cycle|germline conversion to meiosis|germline conversion to meiotic cell cycle|germline cell cycle switching, mitosis to meiosis|germline initiation of meiosis biological_process owl:Class GO:0004833 biolink:NamedThing tryptophan 2,3-dioxygenase activity Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine. tmpzr1t_l9r_go_relaxed.owl tryptamine 2,3-dioxygenase activity|L-tryptophan 2,3-dioxygenase activity|L-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)|TDO|tryptamin 2,3-dioxygenase activity|tryptophan pyrrolase activity|tryptophan oxygenase activity|indoleamine-pyrrole 2,3-dioxygenase activity|L-tryptophan pyrrolase activity|indolamine 2,3-dioxygenase activity|tryptophan peroxidase activity MetaCyc:TRYPTOPHAN-23-DIOXYGENASE-RXN|Reactome:R-HSA-888614|Reactome:R-HSA-71188|RHEA:24536|Reactome:R-HSA-198563|EC:1.13.11.11 GO:0004426 molecular_function owl:Class GO:0070058 biolink:NamedThing tRNA gene clustering The process in which tRNA genes, which are not linearly connected on the chromosome, are transported in three dimensions to, and maintained together in, the nucleolus. This clustered positioning leads to transcriptional silencing of nearby RNA polymerase II promoters (termed tRNA gene mediated (tgm) silencing) in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047113 biolink:NamedThing aldehyde dehydrogenase (quinone) activity Catalysis of the reaction: an aldehyde + a quinone + H2O = a carboxylate + a quinol. tmpzr1t_l9r_go_relaxed.owl aldehyde:(pyrroloquinoline-quinone) oxidoreductase activity|aldehyde dehydrogenase (pyrroloquinoline-quinone)|aldehyde dehydrogenase (acceptor) activity RHEA:13881|EC:1.2.5.2|MetaCyc:1.2.99.3-RXN molecular_function owl:Class GO:0050025 biolink:NamedThing L-glutamate oxidase activity Catalysis of the reaction: L-glutamate + O2 + H2O = 2-oxoglutarate + NH3 + H2O2. tmpzr1t_l9r_go_relaxed.owl L-glutamic acid oxidase activity|glutamic dehydrogenase (acceptor)|glutamate (acceptor) dehydrogenase activity|glutamate oxidase activity|L-glutamate:oxygen oxidoreductase (deaminating)|glutamic acid oxidase activity MetaCyc:L-GLUTAMATE-OXIDASE-RXN|RHEA:20728|EC:1.4.3.11 molecular_function owl:Class GO:0050129 biolink:NamedThing N-formylglutamate deformylase activity Catalysis of the reaction: N-formyl-L-glutamate + H(2)O = L-glutamate + formate. tmpzr1t_l9r_go_relaxed.owl beta-citrylglutamate amidase activity|formylglutamate deformylase activity|beta-citryl-L-glutamate hydrolase activity|beta-citryl-L-glutamate amidase activity|N-formyl-L-glutamate amidohydrolase activity|beta-citryl-L-glutamate-hydrolyzing enzyme|N-formylglutamate hydrolase activity|beta-citryl-L-glutamate amidohydrolase activity EC:3.5.1.68|KEGG_REACTION:R00525|MetaCyc:N-FORMYLGLUTAMATE-DEFORMYLASE-RXN|RHEA:12476 molecular_function owl:Class GO:0018701 biolink:NamedThing 2,5-dichlorohydroquinone reductive dehalogenase activity Catalysis of the reaction: organohalide + 2 H+ + 2 e- = R-H + HCl. Reactants include chlorohydroquinone (forms hydroquinone) and 2,5-dichlorohydroquinone (forms chlorohydroquinone). tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0366|EC:1.97.1.- molecular_function owl:Class GO:0045433 biolink:NamedThing male courtship behavior, veined wing generated song production The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song. tmpzr1t_l9r_go_relaxed.owl male courtship behavior, song production|male courtship behaviour, song production|male courtship behaviour, veined wing generated song production biological_process owl:Class GO:0033883 biolink:NamedThing pyridoxal phosphatase activity Catalysis of the reaction: pyridoxal 5'-phosphate + H2O = pyridoxal + phosphate. tmpzr1t_l9r_go_relaxed.owl vitamin B6-phosphate phosphatase activity|vitamin B6 (pyridoxine) phosphatase activity|PLP phosphatase activity|PNP phosphatase activity|pyridoxal-5'-phosphate phosphohydrolase activity RHEA:20533|EC:3.1.3.74|MetaCyc:3.1.3.74-RXN molecular_function owl:Class GO:0046019 biolink:NamedThing regulation of transcription from RNA polymerase II promoter by pheromones Any process involving pheromones that modulates the frequency, rate or extent or transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol II promoter by pheromones biological_process owl:Class GO:0018863 biolink:NamedThing phenanthrene-9,10-epoxide hydrolase (9S,10S-forming) activity Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9(S),10(S)-dihydrodiolphenanthrene. tmpzr1t_l9r_go_relaxed.owl EC:3.3.2.-|UM-BBD_reactionID:r0496 molecular_function owl:Class GO:1990024 biolink:NamedThing C bouton Synaptic bouton found in spinal cord on the soma and proximal dendrites of motor neurons. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:nlx_subcell_100208 pr 2013-02-06T10:27:41Z cellular_component owl:Class GO:0034895 biolink:NamedThing pyridine-3,4-diol dioxygenase activity Catalysis of the reaction: pryidine-3,4-diol + O2 = 3-(N-formyl)-formiminopyruvate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1398 molecular_function owl:Class GO:0035399 biolink:NamedThing helper T cell enhancement of B cell mediated immune response Positive regulation of a B cell mediated immune response mediated via cytokine production by a helper T cell. tmpzr1t_l9r_go_relaxed.owl helper T cell enhancement of B cell mediated immunity|provision of T cell help to B cell bf 2010-03-23T10:41:46Z biological_process owl:Class GO:0004613 biolink:NamedThing phosphoenolpyruvate carboxykinase (GTP) activity Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvic carboxykinase|phosphopyruvate carboxylase (GTP)|phosphoenolpyruvic carboxykinase (GTP)|phosphoenolpyruvate carboxylase (GTP)|GTP:oxaloacetate carboxy-lyase (transphosphorylating)|GTP:oxaloacetate carboxy-lyase (adding GTP; phosphoenolpyruvate-forming)|phosphoenolpyruvic carboxylase (GTP)|phosphopyruvate (guanosine triphosphate) carboxykinase activity MetaCyc:4.1.1.32-RXN|RHEA:10388|Reactome:R-HSA-70241|Reactome:R-HSA-372819|EC:4.1.1.32 molecular_function owl:Class GO:0047996 biolink:NamedThing hydroxyphytanate oxidase activity Catalysis of the reaction: (2S)-2-hydroxyphytanate + O(2) = 2-oxophytanate + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl L-2-hydroxyphytanate:oxygen 2-oxidoreductase KEGG_REACTION:R07151|MetaCyc:HYDROXYPHYTANATE-OXIDASE-RXN|RHEA:21680|EC:1.1.3.27 molecular_function owl:Class GO:0033620 biolink:NamedThing Mei2 nuclear dot complex A ribonucleoprotein complex that forms during meiotic prophase in a fixed position in the horsetail nucleus; contains Mei2 and meiRNA. May play a role in the progression of meiosis I. tmpzr1t_l9r_go_relaxed.owl Mei2 nuclear dot|Mei2 dot|nuclear body cellular_component owl:Class GO:0102402 biolink:NamedThing 2-phenylethyl 6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside glucosidase (Yabukita) activity Catalysis of the reaction: 2-phenylethyl 6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside + H2O = 2-phenylethanol + 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13694|EC:3.2.1.149 molecular_function owl:Class GO:0061611 biolink:NamedThing mannose to fructose-6-phosphate metabolic process The chemical reactions and pathways in which mannose, the aldohexose manno-hexose, is converted to fructose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl mannose metabolism to fructose-6-phosphate dph 2014-04-03T13:38:50Z biological_process owl:Class GO:0017186 biolink:NamedThing peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase The chemical reactions and pathways resulting in the formation of peptidyl-pyroglutamic acid, catalyzed by glutaminyl-peptide cyclotransferase. tmpzr1t_l9r_go_relaxed.owl 2-pyrrolidone-5-carboxylic acid biosynthetic process|peptidyl-pyroglutamic acid anabolism, using glutaminyl-peptide cyclotransferase|peptidyl-pyroglutamic acid formation, using glutaminyl-peptide cyclotransferase|peptidyl-pyroglutamic acid synthesis, using glutaminyl-peptide cyclotransferase|2-pyrrolidone-5-carboxylic acid biosynthesis RESID:AA0031 See also the molecular function term 'glutaminyl-peptide cyclotransferase activity ; GO:0016603'. biological_process owl:Class GO:0002197 biolink:NamedThing xanthine dehydrogenase complex A homodimeric protein complex having xanthine dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl hjd 2011-10-03T03:55:57Z cellular_component owl:Class GO:0015043 biolink:NamedThing leghemoglobin reductase activity Catalysis of the reaction: NADPH + H+ + 2 ferrileghemoglobin = NADP+ + 2 ferroleghemoglobin. tmpzr1t_l9r_go_relaxed.owl ferric leghemoglobin reductase activity|NAD(P)H:ferrileghemoglobin oxidoreductase activity EC:1.6.2.6|MetaCyc:LEGHEMOGLOBIN-REDUCTASE-RXN molecular_function owl:Class GO:0004920 biolink:NamedThing interleukin-10 receptor activity Combining with interleukin-10 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl IL-10 receptor activity|IL-10R molecular_function owl:Class GO:1990331 biolink:NamedThing Hpa2 acetyltransferase complex A tetrameric protein complex capable of acetyltransferase activity. It can catalyze the transfer of an acetyl group from acetyl-CoA to an acceptor residue on histone H-3, histone H-4, or on polyamines. The complex is also capable of acetylating certain small basic proteins. The two Hpa2 dimers that make up the tetramer are held together by interactions between the bound acetyl-CoA molecules. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-17T10:18:23Z cellular_component owl:Class GO:0031260 biolink:NamedThing pseudopodium membrane The portion of the plasma membrane surrounding a pseudopodium. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019625 biolink:NamedThing atrazine catabolic process to cyanuric acid The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into cyanuric acid. tmpzr1t_l9r_go_relaxed.owl atrazine breakdown to cyanuric acid|atrazine degradation to cyanuric acid MetaCyc:P141-PWY biological_process owl:Class GO:0103060 biolink:NamedThing kaempferol 3-rhamnoside 7-O-rhamnosyltransferase activity Catalysis of the reaction: kaempferol-3-rhamnoside + UDP-L-rhamnose <=> kaempferol-3-rhamnoside-7-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-475 molecular_function owl:Class GO:1990407 biolink:NamedThing calcitonin gene-related peptide binding Binding to calcitonin gene-related peptide (CGRP). tmpzr1t_l9r_go_relaxed.owl calcitonin-gene-related peptide binding|CGRP polypeptide binding|calcitonin-gene-related polypeptide binding An example of this is CALCRL in human (Q16602) in PMID:10882736 (inferred from direct assay/mutant phenotype/etc.). bhm 2014-07-02T14:22:06Z molecular_function owl:Class GO:0042361 biolink:NamedThing menaquinone catabolic process The chemical reactions and pathways resulting in the breakdown of menaquinones, any of the quinone-derived compounds synthesized by intestinal bacteria. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones have vitamin K activity and are known as vitamin K2. tmpzr1t_l9r_go_relaxed.owl menatetrenone catabolism|vitamin K2 catabolic process|multiprenylmenaquinone catabolic process|menaquinone catabolism|menaquinone breakdown|vitamin K2 catabolism|multiprenylmenaquinone catabolism|menatetrenone catabolic process|menaquinone degradation biological_process owl:Class GO:0035884 biolink:NamedThing arabinan biosynthetic process The chemical reactions and pathways resulting in the formation of arabinan, a polysaccharide composed of arabinose residues. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-08T11:01:14Z biological_process owl:Class GO:0018583 biolink:NamedThing biphenyl-2,3-diol 1,2-dioxygenase activity Catalysis of the reaction: biphenyl-2,3-diol + O2 = 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate + H2O. tmpzr1t_l9r_go_relaxed.owl biphenyl-2,3-diol dioxygenase activity|2,3-dihydroxybiphenyl dioxygenase activity|biphenyl-2,3-diol:oxygen 1,2-oxidoreductase (decyclizing)|2,3-dihydroxybiphenyl 1,2-dioxygenase activity MetaCyc:BIPHENYL-23-DIOL-12-DIOXYGENASE-RXN|RHEA:14413|EC:1.13.11.39|UM-BBD_enzymeID:e0127 molecular_function owl:Class GO:0008196 biolink:NamedThing vitellogenin receptor activity Receiving vitellogenin, and delivering vitellogenin into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047544 biolink:NamedThing 2-hydroxybiphenyl 3-monooxygenase activity Catalysis of the reaction: biphenyl-2-ol + H(+) + NADH + O(2) = biphenyl-2,3-diol + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 2-hydroxybiphenyl,NADH:oxygen oxidoreductase (3-hydroxylating) RHEA:11996|EC:1.14.13.44|MetaCyc:2-HYDROXYBIPHENYL-3-MONOOXYGENASE-RXN|UM-BBD_reactionID:r1423|KEGG_REACTION:R03964 molecular_function owl:Class GO:0019923 biolink:NamedThing alpha-1-microglobulin-chromophore linkage The covalent linking of the alpha-1-microglobulin chromophore to the protein; the structure of the chromophore is not known. It is probably heterogeneous and involving two cysteines in thioether bonds. tmpzr1t_l9r_go_relaxed.owl RESID:AA0224 biological_process owl:Class GO:0008421 biolink:NamedThing long-chain fatty-acyl-glutamate deacylase activity Catalysis of the reaction: N-long-chain-fatty-acyl-L-glutamate + H2O = a fatty acid anion + L-glutamate. tmpzr1t_l9r_go_relaxed.owl long-chain acylglutamate amidase activity|N-long-chain-fatty-acyl-L-glutamate amidohydrolase activity|long-chain aminoacylase activity|long-chain fatty acyl-glutamate deacylase activity|long-chain-fatty-acyl-glutamate deacylase activity EC:3.5.1.55|RHEA:17517|MetaCyc:3.5.1.55-RXN molecular_function owl:Class GO:0047792 biolink:NamedThing cyanohydrin beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + (S)-4-hydroxymandelonitrile = UDP + (S)-4-hydroxy-mandelonitrile beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl cyanohydrin b-glucosyltransferase activity|UDP-D-glucose:(S)-4-hydroxymandelonitrile beta-D-glucosyltransferase activity|UGT85B1 activity|uridine diphosphoglucose-p-hydroxymandelonitrile glucosyltransferase activity|UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase activity|UDP-glucose:(S)-4-hydroxymandelonitrile beta-D-glucosyltransferase activity|uridine diphosphoglucose:aldehyde cyanohydrin beta-glucosyltransferase activity|UDP-glucose-p-hydroxymandelonitrile glucosyltransferase activity|uridine diphosphoglucose-cyanohydrin glucosyltransferase activity RHEA:12853|EC:2.4.1.85 molecular_function owl:Class GO:0035327 biolink:NamedThing transcriptionally active chromatin The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed. tmpzr1t_l9r_go_relaxed.owl bf 2010-02-26T10:23:02Z cellular_component owl:Class GO:0106323 biolink:NamedThing (S)-limonene 1,2-monooxygenase NADPH activity Catalysis of the reaction: (4S)-limonene + NADPH+= + H+ + O2 = NADP+ + H2O + (4S)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl RHEA:26085 hjd 2020-09-23T15:35:43Z molecular_function owl:Class GO:0102530 biolink:NamedThing aclacinomycin T methylesterase activity Catalysis of the reaction: aclacinomycin T(1+) + H2O <=> 15-demethylaclacinomycin T + methanol + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.95|MetaCyc:RXN-14703|RHEA:37891 molecular_function owl:Class GO:0070027 biolink:NamedThing carbon monoxide sensor activity Binding to and responding, e.g. by conformational change, to changes in the cellular level of carbon monoxide (CO). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019667 biolink:NamedThing anaerobic L-alanine catabolic process The anaerobic chemical reactions and pathways resulting in the breakdown of L-alanine, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl L-alanine fermentation biological_process owl:Class GO:0031787 biolink:NamedThing H9 melatonin receptor binding Binding to a H9 melatonin receptor. tmpzr1t_l9r_go_relaxed.owl H9 melatonin receptor ligand molecular_function owl:Class GO:0047302 biolink:NamedThing UDP-2-acetamido-4-amino-2,4,6-trideoxyglucose transaminase activity Catalysis of the reaction: 2-oxoglutarate + UDP-2-acetamido-4-amino-2,4,6-trideoxy-D-glucose = L-glutamate + UDP-2-acetamido-4-dehydro-2,6-dideoxy-beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl UDP-4-amino-2-acetamido-2,4,6-trideoxyglucose transaminase activity|uridine diphospho-4-amino-2-acetamido-2,4,6-trideoxyglucose aminotransferase activity|UDP-2-acetamido-4-amino-2,4,6-trideoxyglucose:2-oxoglutarate aminotransferase activity|UDP-4-amino-2-acetamido-2,4,6-trideoxyglucose aminotransferase activity KEGG_REACTION:R04529|EC:2.6.1.34|RHEA:31663|MetaCyc:2.6.1.34-RXN molecular_function owl:Class GO:0017090 biolink:NamedThing meprin A complex A protein complex that is located in the cell membrane, and is involved in the metabolism of peptides, including neuropeptides. The complex has metalloendopeptidase activity that catalyzes the hydrolysis of protein and peptide substrates, preferentially on carboxyl side of hydrophobic residues. tmpzr1t_l9r_go_relaxed.owl PABA peptide hydrolase complex cellular_component owl:Class GO:0140594 biolink:NamedThing xyloglucan-specific endo-beta-1,4-glucanase inhibitor activity Stops, prevents or reduces the activity of xyloglucan-specific endo-beta-1,4-glucanase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20814 pg 2021-02-09T18:59:49Z molecular_function owl:Class GO:0017188 biolink:NamedThing aspartate N-acetyltransferase activity Catalysis of the reaction: L-aspartate + acetyl-CoA = N-acetyl-L-aspartate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl L-aspartate N-acetyltransferase activity|acetyl-CoA:L-aspartate N-acetyltransferase activity|aspartate acetyltransferase activity Reactome:R-HSA-8954468|EC:2.3.1.17|KEGG_REACTION:R00487|RHEA:14165|MetaCyc:ASPARTATE-N-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0019416 biolink:NamedThing polythionate oxidation The chemical reactions and pathways resulting in the conversion of thiosulfate to tetrathionate, using cytochrome c as an electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:THIOSULFOX-PWY biological_process owl:Class GO:0036032 biolink:NamedThing neural crest cell delamination The negative regulation of cell adhesion process in which a neural crest cell physically separates from the rest of the neural tube. tmpzr1t_l9r_go_relaxed.owl neural crest cell individualization|neural crest cell segregation|neural crest cell emigration bf 2011-10-31T03:50:30Z biological_process owl:Class GO:0033946 biolink:NamedThing xyloglucan-specific endo-beta-1,4-glucanase activity Catalysis of the reaction: xyloglucan + H2O = xyloglucan oligosaccharides. This reaction is the endohydrolysis of (1->4)-beta-D-glucosidic linkages in xyloglucan. tmpzr1t_l9r_go_relaxed.owl [(1->6)-beta-D-xylo]-(1->4)-beta-D-glucan glucanohydrolase activity|xyloglucanendohydrolase activity|xyloglucan endo-beta-1,4-glucanase activity|XH|1,4-beta-D-glucan glucanohydrolase activity|XEG|xyloglucanase activity EC:3.2.1.151|MetaCyc:3.2.1.151-RXN molecular_function owl:Class GO:0036209 biolink:NamedThing 9beta-pimara-7,15-diene oxidase activity Catalysis of the reaction: 9beta-pimara-7,15-diene + 3 O2 + 3 reduced [NADPH-hemoprotein reductase] = 9beta-pimara-7,15-dien-19-oate + 4 H+ + 4 H2O + 3 oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl 9-beta-stemod-13(17)-ene oxidase activity https://github.com/geneontology/go-ontology/issues/21412 EC:1.14.14.111|RHEA:31951|KEGG_REACTION:R09865|MetaCyc:RXN-15437 Formerly EC:1.14.13.144. bf 2012-04-25T11:11:55Z GO:0102609 molecular_function owl:Class GO:0061655 biolink:NamedThing Pup conjugating enzyme activity Isoenergetic transfer of Pup from one protein to another via the reaction X-Pup + Y -> Y-Pup + X, where both the X-Pup and Y-Pup linkages are thioester bonds between the C-terminal amino acid of Pup and a sulfhydryl side group of a cysteine residue. tmpzr1t_l9r_go_relaxed.owl E2 dph 2014-11-06T13:30:46Z molecular_function owl:Class GO:0015673 biolink:NamedThing silver ion transport The directed movement of silver (Ag) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl silver transport biological_process owl:Class GO:0090639 biolink:NamedThing phosphatidylcholine biosynthesis from choline and CDP-diacylglycerol The phosphatidylcholine biosynthetic process that involves a one-step direct condensation of choline with CDP-diacylglycerol to form phosphatidylcholine. tmpzr1t_l9r_go_relaxed.owl tb 2015-04-23T15:56:12Z biological_process owl:Class GO:1990539 biolink:NamedThing fructose import across plasma membrane The directed movement of fructose substance from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl vw 2014-11-19T10:57:17Z biological_process owl:Class GO:0097672 biolink:NamedThing SCF-Pof5 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Pof5 in S. pombe (YDR306C in S. cerevisiae). tmpzr1t_l9r_go_relaxed.owl SCF-YDR306C ubiquitin ligase complex pr 2014-10-06T10:30:10Z cellular_component owl:Class GO:1901855 biolink:NamedThing 5,6,7,8-tetrahydrosarcinapterin biosynthetic process The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydrosarcinapterin. tmpzr1t_l9r_go_relaxed.owl 5,6,7,8-tetrahydrosarcinapterin synthesis|5,6,7,8-tetrahydrosarcinapterin anabolism|5,6,7,8-tetrahydrosarcinapterin biosynthesis|5,6,7,8-tetrahydrosarcinapterin formation yaf 2013-01-28T11:48:05Z biological_process owl:Class GO:0051741 biolink:NamedThing 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-methyl-6-phytyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-phytyl-1,4-benzoquinone + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl MPBQ methyltransferase activity RHEA:37979|MetaCyc:RXN-2542 molecular_function owl:Class GO:0102743 biolink:NamedThing eriodictyol,NADPH:oxygen oxidoreductase activity Catalysis of the reaction: H+ + eriodictyol + NADPH + O2 <=> 2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-olate luteolin-7-olate(1-) + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7653 molecular_function owl:Class GO:1905502 biolink:NamedThing acetyl-CoA binding Binding to acetyl-CoA, an acyl-CoA having acetyl as its S-acetyl component. tmpzr1t_l9r_go_relaxed.owl acetyl-coenzyme A binding bc 2016-09-27T16:33:44Z molecular_function owl:Class GO:1902712 biolink:NamedThing G protein-coupled GABA receptor complex A protein complex which is capable of G protein-coupled GABA receptor activity. In human, it is usually a heterodimer composed of GABA-B receptor subunits 1 and 2. tmpzr1t_l9r_go_relaxed.owl G-protein coupled GABA receptor complex An example of this is GABR1 in human (UniProt symbol Q9UBS5) in PMID:18790874. bhm 2014-02-21T09:47:03Z cellular_component owl:Class GO:0035147 biolink:NamedThing branch fusion, open tracheal system Fusing of specific tracheal branches in an open tracheal system to branches from neighboring hemisegments to form a continuous tracheal network. Branch fusion is mediated by individual cells at the tip of each branch, which contact a similar cell and undergo a coordinated series of morphogenetic events that create a bicellular fusion joint. tmpzr1t_l9r_go_relaxed.owl tracheal branch fusion biological_process owl:Class GO:0102317 biolink:NamedThing 4-methylaminobutyrate oxidase (demethylating) activity Catalysis of the reaction: 4-(methylamino)butyric acid + O2 + H2O <=> gamma-aminobutyric acid + formaldehyde + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13067|EC:1.5.3.19|RHEA:33907 molecular_function owl:Class GO:0043464 biolink:NamedThing malolactic fermentation The anaerobic enzymatic conversion of L-malate to L-lactate and carbon dioxide, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl malate fermentation|L-malate fermentation|malolactate fermentation|malo-lactate fermentation Wikipedia:Malolactic_fermentation biological_process owl:Class GO:0103066 biolink:NamedThing 4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-oxidoreductase (decarboxylating) activity Catalysis of the reaction: 4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol + NAD(P) = 4alpha-methyl-5alpha-cholesta-8-en-3-one + carbon dioxide + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.170|MetaCyc:RXN66-18 molecular_function owl:Class GO:0000839 biolink:NamedThing Hrd1p ubiquitin ligase ERAD-L complex A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018530 biolink:NamedThing (R)-6-hydroxynicotine oxidase activity Catalysis of the reaction: (R)-6-hydroxynicotine + H(2)O + O(2) = 6-hydroxypseudooxynicotine + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl D-6-hydroxynicotine oxidase activity|6-hydroxy-D-nicotine oxidase activity|(R)-6-hydroxynicotine:oxygen oxidoreductase activity EC:1.5.3.6|MetaCyc:R-6-HYDROXYNICOTINE-OXIDASE-RXN|RHEA:10012|UM-BBD_reactionID:r0477|KEGG_REACTION:R07170 molecular_function owl:Class GO:1902927 biolink:NamedThing inulin catabolic process The chemical reactions and pathways resulting in the breakdown of inulin. tmpzr1t_l9r_go_relaxed.owl inulin degradation|inulin catabolism|inulin breakdown SUC2 in S. cerevisiae strain JZ1C in PMID:23104410. se 2014-04-21T23:54:45Z biological_process owl:Class GO:0043251 biolink:NamedThing sodium-dependent organic anion transport The directed, sodium-dependent, movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045430 biolink:NamedThing chalcone isomerase activity Catalysis of the reaction: a chalcone = a flavanone. tmpzr1t_l9r_go_relaxed.owl chalcone--flavonone isomerase activity|chalcone-flavanone isomerase activity|flavanone lyase (decyclizing) EC:5.5.1.6|MetaCyc:CHALCONE-ISOMERASE-RXN molecular_function owl:Class GO:0002051 biolink:NamedThing osteoblast fate commitment The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030909 biolink:NamedThing non-intein-mediated protein splicing The post-translational removal of peptide sequences from within a protein sequence, by a process not involving inteins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005499 biolink:NamedThing vitamin D binding Binding to vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). tmpzr1t_l9r_go_relaxed.owl calciferol binding|cholecalciferol binding|ergocalciferol binding molecular_function owl:Class GO:0050314 biolink:NamedThing sym-norspermidine synthase activity Catalysis of the reaction: 1,3-diaminopropane + S-adenosylmethioninamine = S-methyl-5'-thioadenosine + bis(3-aminopropyl)amine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosylmethioninamine:propane-1,3-diamine 3-aminopropyltransferase activity KEGG_REACTION:R03271|MetaCyc:SYM-NORSPERMIDINE-SYNTHASE-RXN|EC:2.5.1.23|RHEA:23244 molecular_function owl:Class GO:0015955 biolink:NamedThing pyrimidine deoxyribonucleotide interconversion The chemical reactions and pathways by which a pyrimidine deoxyribonucleotide is synthesized from another pyrimidine deoxyribonucleotide. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061477 biolink:NamedThing response to aromatase inhibitor Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aromatase inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:08:36Z biological_process owl:Class GO:0001631 biolink:NamedThing cysteinyl leukotriene receptor activity Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide group based on cysteine. tmpzr1t_l9r_go_relaxed.owl CysLT receptor molecular_function owl:Class GO:0018622 biolink:NamedThing 4-chlorophenylacetate 3,4-dioxygenase activity Catalysis of the reaction: 4-chlorophenylacetate + NADH + O(2) = 3,4-dihydroxyphenylacetate + chloride + NAD(+). tmpzr1t_l9r_go_relaxed.owl 4-chlorophenylacetate,NADH:oxygen oxidoreductase (3,4-hydroxylating, dechlorinating) KEGG_REACTION:R03306|MetaCyc:1.14.12.9-RXN|EC:1.14.12.9|RHEA:14689|UM-BBD_reactionID:r0308 molecular_function owl:Class GO:0072391 biolink:NamedThing phenol biosynthetic process The chemical reactions and pathways resulting in the formation of phenol, a compound that consists of a benzene ring with one attached hydroxyl group. tmpzr1t_l9r_go_relaxed.owl mah 2010-12-06T04:08:04Z biological_process owl:Class GO:0033407 biolink:NamedThing UCA codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a UCA codon. tmpzr1t_l9r_go_relaxed.owl TCA codon-amino acid adaptor activity|serine tRNA Note that in the standard genetic code, TCA codes for serine. molecular_function owl:Class GO:0003825 biolink:NamedThing alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + D-glucose-6-phosphate = UDP + alpha,alpha-trehalose-6-phosphate. tmpzr1t_l9r_go_relaxed.owl UDPglucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase activity|phosphotrehalose-uridine diphosphate transglucosylase activity|UDP-glucose-glucosephosphate glucosyltransferase activity|UDPglucose-glucose-phosphate glucosyltransferase activity|trehalose-phosphate synthetase activity|UDP-glucose-glucose-phosphate glucosyltransferase activity|trehalosephosphate-UDP glucosyltransferase activity|uridine diphosphoglucose phosphate glucosyltransferase activity|trehalose-phosphate synthase activity|trehalose phosphate-uridine diphosphate glucosyltransferase activity|trehalose 6-phosphate synthase activity|trehalose phosphate synthase activity|transglucosylase activity|alpha,alpha-trehalose phosphate synthase (UDP-forming)|trehalosephosphate-UDP glucosyl transferase activity|trehalose phosphate synthetase activity|trehalose-P synthetase activity|trehalose 6-phosphate synthetase activity|UDP-glucose:D-glucose-6-phosphate 1-alpha-D-glucosyltransferase activity MetaCyc:TREHALOSE6PSYN-RXN|EC:2.4.1.15|RHEA:18889 molecular_function owl:Class GO:0051745 biolink:NamedThing 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. tmpzr1t_l9r_go_relaxed.owl isopentenyl-diphosphate:NAD(P)+ oxidoreductase activity|4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity EC:1.17.7.4|MetaCyc:ISPH2-RXN molecular_function owl:Class GO:0019750 biolink:NamedThing chloroplast localization Any process in which a chloroplast is transported to, and/or maintained in, a specific location within the cell. A chloroplast is a chlorophyll-containing plastid found in cells of algae and higher plants. tmpzr1t_l9r_go_relaxed.owl chloroplast localisation biological_process owl:Class GO:0018658 biolink:NamedThing salicylate 1-monooxygenase activity Catalysis of the reaction: salicylate + NADH + H+ + O2 = catechol + NAD+ + H2O + CO2. tmpzr1t_l9r_go_relaxed.owl salicylate 1-hydroxylase activity|salicylate monooxygenase activity|salicylate,NADH:oxygen oxidoreductase (1-hydroxylating, decarboxylating)|salicylate hydroxylase activity|salicylic hydroxylase activity|salicylate hydroxylase (decarboxylating) RHEA:11004|UM-BBD_enzymeID:e0149|MetaCyc:SALICYLATE-1-MONOOXYGENASE-RXN|EC:1.14.13.1 molecular_function owl:Class GO:0072435 biolink:NamedThing response to mitotic G2 DNA damage checkpoint signaling A process that occurs in response to signals generated as a result of mitotic G2/M transition DNA damage checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to mitotic G2/M transition decatenation checkpoint signaling|response to mitotic G2/M transition DNA damage checkpoint signaling|mitotic G2/M transition decatenation checkpoint effector process|response to signal involved in mitotic G2/M transition DNA damage checkpoint|mitotic G2/M transition DNA damage checkpoint effector process|response to signal involved in mitotic G2/M transition decatenation checkpoint mah 2010-12-08T04:44:01Z GO:0072458 biological_process owl:Class GO:0015344 biolink:NamedThing siderophore uptake transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(ferrioxamine)(out) + H+(out) = siderophore-iron(ferrioxamine)(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl siderophore-iron uptake transmembrane transporter activity|siderochrome-iron (ferrioxamine) uptake transporter|ferrioxamine uptake transmembrane transporter activity molecular_function owl:Class GO:0004080 biolink:NamedThing biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity Catalysis of the reaction: ATP + biotin + apo-(propanoyl-CoA:carbon-dioxide ligase (ADP-forming)) = AMP + diphosphate + (propanoyl-CoA:carbon-dioxide ligase (ADP-forming)). tmpzr1t_l9r_go_relaxed.owl propionyl-CoA holocarboxylase synthetase activity|holocarboxylase synthetase activity|biotin-propionyl coenzyme A carboxylase synthetase activity|biotin-propionyl-CoA-carboxylase (ATP-hydrolysing) ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] synthetase activity|biotin:apo-propanoyl-CoA:carbon-dioxide ligase (ADP-forming) ligase (AMP-forming)|propionyl coenzyme A holocarboxylase synthetase activity|biotin-propionyl-CoA-carboxylase (ATP-hydrolysing) synthetase activity EC:6.3.4.10|RHEA:11204|MetaCyc:6.3.4.10-RXN molecular_function owl:Class GO:0052574 biolink:NamedThing UDP-galactose biosynthetic process The chemical reactions and pathways resulting in the formation of UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl UDP-galactose biosynthesis|uridine diphosphate galactose biosynthesis|UDP-D-galactose biosynthesis|UDP-D-galactopyranose biosynthesis|uridine diphosphate galactose biosynthetic process|UDP-D-galactopyranose biosynthetic process|UDP-D-galactose biosynthetic process 2010-07-23T03:52:40Z biological_process owl:Class GO:0047751 biolink:NamedThing cholestenone 5-alpha-reductase activity Catalysis of the reaction: 5alpha-cholestan-3-one + NADP(+) = cholest-4-en-3-one + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-oxosteroid delta4-dehydrogenase|cholestenone 5alpha-reductase activity|testosterone delta4-5alpha-reductase activity|steroid 5alpha-hydrogenase activity|cholest-4-en-3-one 5alpha-reductase activity|testosterone delta4-hydrogenase activity|4-ene-5alpha-reductase activity|3-oxo-5alpha-steroid:NADP+ delta4-oxidoreductase activity|3-oxosteroid 5alpha-reductase activity|cholestenone 5a-reductase activity|reduced nicotinamide adenine dinucleotide phosphate:Delta4-3-ketosteroid 5alpha-oxidoreductase activity|testosterone 5alpha-reductase|delta4-3-ketosteroid 5alpha-oxidoreductase activity|5alpha-reductase|4-ene-3-oxosteroid 5alpha-reductase activity|steroid 5alpha-reductase EC:1.3.1.22|KEGG_REACTION:R02610|MetaCyc:CHOLESTENONE-5-ALPHA-REDUCTASE-RXN|RHEA:24552 molecular_function owl:Class GO:0031417 biolink:NamedThing NatC complex A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Ile, Met-Leu, Met-Trp, or Met-Phe N-terminus. In Saccharomyces the complex includes Mak3p, Mak10p, and Mak31p. tmpzr1t_l9r_go_relaxed.owl N-terminal acetyltransferase C complex cellular_component owl:Class GO:0070034 biolink:NamedThing telomerase RNA binding Binding to the telomerase RNA template. tmpzr1t_l9r_go_relaxed.owl TERC binding molecular_function owl:Class GO:0102069 biolink:NamedThing zerumbone synthase activity Catalysis of the reaction: 8-hydroxy-alpha-humulene + NAD <=> zerumbone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:32327|EC:1.1.1.326|MetaCyc:RXN-10629 molecular_function owl:Class GO:1990868 biolink:NamedThing response to chemokine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemokine stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-09-25T16:37:00Z biological_process owl:Class GO:0043640 biolink:NamedThing benzoate catabolic process via hydroxylation The chemical reactions and pathways resulting in the breakdown of benzoate, by its hydroxylation to cis-1,2-dihydroxybenzoate followed by dehydrogenation to catechol. tmpzr1t_l9r_go_relaxed.owl benzoate breakdown via hydroxylation|benzoate degradation via hydroxylation MetaCyc:PWY-2503 biological_process owl:Class GO:0034916 biolink:NamedThing 2-methylhexanoyl-CoA dehydrogenase activity Catalysis of the reaction: 2-methylhexanoyl-CoA = 2-methylhex-2-enoyl-CoA + 2 H+ + e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0928|EC:1.3.99.- molecular_function owl:Class GO:0102111 biolink:NamedThing gibberellin A20,2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A20 + 2-oxoglutarate + O2 <=> gibberellin A29 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-113 molecular_function owl:Class GO:0046510 biolink:NamedThing UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity Catalysis of the reaction: UDP-sulfoquinovose + 1,2-diacylglycerol = sulfoquinovosyldiacylglycerol + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-sulphoquinovose:DAG sulphoquinovosyltransferase activity|sulfolipid synthase RHEA:49468|MetaCyc:RXN-1224 molecular_function owl:Class GO:0075341 biolink:NamedThing host cell PML body A nuclear body that reacts against SP100 auto-antibodies (PML = promyelocytic leukemia) located within a cell of a host organism. tmpzr1t_l9r_go_relaxed.owl host cell PML nuclear body|host cell PML NB cellular_component owl:Class GO:0015054 biolink:NamedThing gastrin receptor activity Combining with gastrin and transmitting the signal across the membrane by activating an associated G-protein to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl cholecystokinin-B receptor activity molecular_function owl:Class GO:0015052 biolink:NamedThing beta3-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta3-adrenergic receptors. tmpzr1t_l9r_go_relaxed.owl beta3 adrenoceptor molecular_function owl:Class GO:0017065 biolink:NamedThing single-strand selective uracil DNA N-glycosylase activity Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl single-strand selective monofunctional uracil-DNA glycosylase activity Reactome:R-HSA-110221 molecular_function owl:Class GO:0004844 biolink:NamedThing uracil DNA N-glycosylase activity Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine. tmpzr1t_l9r_go_relaxed.owl uracil-DNA glycosylase activity Reactome:R-HSA-110217|Reactome:R-HSA-110215 molecular_function owl:Class GO:0072137 biolink:NamedThing condensed mesenchymal cell proliferation The multiplication or reproduction of cells, resulting in the expansion of a condensed mesenchymal cell population. A condensed mesenchymal cell population is a population of adherent mesenchymal cells. tmpzr1t_l9r_go_relaxed.owl mah 2010-02-22T02:38:54Z biological_process owl:Class GO:1903120 biolink:NamedThing protein localization to actin filament bundle A process in which a protein is transported to, or maintained in, the location of an actin filament bundle. tmpzr1t_l9r_go_relaxed.owl protein localization in actin filament bundle|protein localization to actin cable|protein localisation to actin filament bundle|protein localisation in actin filament bundle mah 2014-06-16T11:27:16Z biological_process owl:Class GO:0032148 biolink:NamedThing activation of protein kinase B activity Any process that initiates the activity of the inactive enzyme protein kinase B. tmpzr1t_l9r_go_relaxed.owl protein kinase B activation biological_process owl:Class GO:0106283 biolink:NamedThing ursodeoxycholate 7-beta-dehydrogenase (NAD+) activity Catalysis of the reaction: NAD(+) + ursodeoxycholate = 7-oxolithocholate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:42028 hjd 2020-07-29T17:52:44Z molecular_function owl:Class GO:1990275 biolink:NamedThing preribosome binding Binding to a preribosome. tmpzr1t_l9r_go_relaxed.owl tb 2014-01-16T19:14:50Z molecular_function owl:Class GO:0070725 biolink:NamedThing Yb body A cytoplasmic part that appears as an electron-dense sphere of around 1.5 micron diameter containing Yb protein found in somatic cells of ovary and testis. There are one to two Yb bodies per cell. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-15T05:17:28Z cellular_component owl:Class GO:0018366 biolink:NamedThing chiral amino acid racemization The formation of a mixture of the two possible enantiomers from the D- or L-enantiomer of a chiral amino acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061510 biolink:NamedThing asymmetric protein localization to new mitotic spindle pole body Any process in which a protein is transported to, or maintained to the new mitotic spindle pole body resulting in its being distributed asymmetrically. tmpzr1t_l9r_go_relaxed.owl dph 2013-02-21T13:49:54Z biological_process owl:Class GO:0015375 biolink:NamedThing glycine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycine(out) + Na+(out) = glycine(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-444120|Reactome:R-HSA-5660840 GO:0015656 molecular_function owl:Class GO:0019938 biolink:NamedThing peptide cross-linking via N6-(L-isoaspartyl)-L-lysine, presumed catalytic The formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues; occurs in mammals in proteins as yet unidentified by a mechanism probably analogous to that of transglutaminase reactions. tmpzr1t_l9r_go_relaxed.owl RESID:AA0294 GO:0042266 biological_process owl:Class GO:0003118 biolink:NamedThing regulation of vasoconstriction by neuronal norepinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of norepinephrine released by nerve endings. tmpzr1t_l9r_go_relaxed.owl regulation of vasoconstriction by neuronal noradrenaline biological_process owl:Class GO:0070384 biolink:NamedThing Harderian gland development The process whose specific outcome is the progression of the Harderian gland over time, from its formation to the mature structure. The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species. tmpzr1t_l9r_go_relaxed.owl Note that the Harderian gland is found in all terrestrial vertebrate groups, including amphibia, reptiles, birds, and mammals. However, it appears to be absent in certain mammals such as bats, cows, horses, and higher primates. Though largely absent in the adult human, it is present in the fetal and neonatal stages. biological_process owl:Class GO:1990679 biolink:NamedThing histone H4-K12 deacetylation The modification of histone H4 by the removal of an acetyl group from lysine at position 12 of the histone. tmpzr1t_l9r_go_relaxed.owl al 2015-03-02T15:40:44Z biological_process owl:Class GO:0015441 biolink:NamedThing ABC-type beta-glucan transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + beta-glucan(in) = ADP + phosphate + beta-glucan(out). tmpzr1t_l9r_go_relaxed.owl ATPase-coupled beta-glucan transporter activity|beta-glucan-transporting ATPase activity|beta-glucan ABC transporter|ABC-type beta-glucan transporter|ATP-dependent beta-glucan transporter activity MetaCyc:3.6.3.42-RXN|EC:7.5.2.3|RHEA:18453 molecular_function owl:Class GO:0007164 biolink:NamedThing establishment of tissue polarity Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0106137 biolink:NamedThing IkappaB kinase complex binding Binding to a IkappaB kinase complex. tmpzr1t_l9r_go_relaxed.owl hjd 2018-08-15T14:05:10Z molecular_function owl:Class GO:0046738 biolink:NamedThing induction of innate immune response in host by virus The intentional, virally-encoded stimulation of an innate host defense response to viral infection. tmpzr1t_l9r_go_relaxed.owl active induction of innate immune response in host by virus|active viral induction of innate immune response in host biological_process owl:Class GO:0014862 biolink:NamedThing regulation of skeletal muscle contraction by chemo-mechanical energy conversion Any process that modulates the frequency, rate or extent of skeletal muscle contraction by regulating force and velocity of shortening. The force of skeletal muscle contraction is produced by acto-myosin interaction processes through formation of cross bridges. The shortening leads to reduction of length of muscle fiber and sarcomeres. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0036383 biolink:NamedThing 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase activity Catalysis of the reaction: 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMNH2 + O2 = 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMN + H2O. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R09819|MetaCyc:1.14.14.12-RXN|EC:1.14.14.12|RHEA:31731 bf 2013-05-23T11:31:09Z molecular_function owl:Class GO:0030883 biolink:NamedThing endogenous lipid antigen binding Binding to an endogenous cellular lipid antigen. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035363 biolink:NamedThing histone locus body A nuclear body associated with the histone gene locus that is thought to contain all of the factors necessary for histone mRNA transcription and pre-mRNA processing. In Drosophila, U7 snRNP is located in the histone locus body rather than the distinct Cajal body. tmpzr1t_l9r_go_relaxed.owl HLB bf 2010-03-10T10:44:01Z cellular_component owl:Class GO:0071191 biolink:NamedThing protocadherin-alpha-v7-protocadherin-gamma-b4 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdha7-Pcdhgb2 complex mah 2009-11-23T04:30:51Z cellular_component owl:Class GO:0102432 biolink:NamedThing quercetin 7-O-methyltransferase activity Catalysis of the reaction: quercetin-7-olate + S-adenosyl-L-methionine <=> rhamnetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13906 molecular_function owl:Class GO:0033879 biolink:NamedThing acetylajmaline esterase activity Catalysis of the reactions: 17-O-acetylajmaline + H2O = ajmaline + acetate, and 17-O-acetylnorajmaline + H2O = norajmaline + acetate. tmpzr1t_l9r_go_relaxed.owl AAE|17-O-acetylajmaline O-acetylhydrolase activity|acetylajmalan esterase activity|2beta(R)-17-O-acetylajmalan:acetylesterase activity EC:3.1.1.80|MetaCyc:RXN-8653|MetaCyc:RXN-8652 molecular_function owl:Class GO:0034830 biolink:NamedThing (2Z)-2,4-dihydroxydec-2-enedioate aldolase activity Catalysis of the reaction: (2Z)-2,4-dihydroxydec-2-enedioate = pyruvate + 7-oxoheptanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1174|EC:4.1.3.- molecular_function owl:Class GO:0047571 biolink:NamedThing 3-oxosteroid 1-dehydrogenase activity Catalysis of the reaction: a 3-oxosteroid + acceptor = a 3-oxo-D1-steroid + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 3-oxosteroid delta1-dehydrogenase activity|3-ketosteroid-1-en-dehydrogenase activity|3-oxosteroid:(acceptor) delta1-oxidoreductase activity|3-ketosteroid-delta1-dehydrogenase activity|1-ene-dehydrogenase activity|4-en-3-oxosteroid:(acceptor)-1-en-oxido-reductase activity|delta1-dehydrogenase activity|delta1-steroid reductase activity|3-oxosteroid:acceptor delta1-oxidoreductase activity|3-oxosteroid:(2,6-dichlorphenolindophenol) delta1-oxidoreductase activity UM-BBD_enzymeID:e0712|MetaCyc:3-OXOSTEROID-1-DEHYDROGENASE-RXN|EC:1.3.99.4|RHEA:13329 molecular_function owl:Class GO:0044205 biolink:NamedThing 'de novo' UMP biosynthetic process The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen. tmpzr1t_l9r_go_relaxed.owl 'de novo' UMP biosynthesis jl 2009-10-21T11:27:31Z biological_process owl:Class GO:0052754 biolink:NamedThing GTP:coenzyme F420 guanyltransferase activity Catalysis of the reaction: GTP + factor gamma-F420-2 + H+ = coenzyme F390-G + diphosphate. tmpzr1t_l9r_go_relaxed.owl coenzyme F390-G synthetase activity|GTP:coenzyme F420 guanylyltransferase activity ai 2011-09-22T03:25:30Z molecular_function owl:Class GO:0050528 biolink:NamedThing acyloxyacyl hydrolase activity Catalysis of the reaction: 3-(acyloxy)acyl group of bacterial toxin = 3-hydroxyacyl group of bacterial toxin + a fatty acid. tmpzr1t_l9r_go_relaxed.owl RHEA:12032|MetaCyc:3.1.1.77-RXN|EC:3.1.1.77 molecular_function owl:Class GO:0120116 biolink:NamedThing glucagon processing The formation of mature glucagon by proteolysis of the precursor proglucagon. tmpzr1t_l9r_go_relaxed.owl krc 2017-11-08T19:31:42Z biological_process owl:Class GO:0047438 biolink:NamedThing 2-dehydro-3-deoxy-L-pentonate aldolase activity Catalysis of the reaction: 2-dehydro-3-deoxy-L-pentonate = glycolaldehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2-dehydro-3-deoxy-L-pentonate glycolaldehyde-lyase activity|2-keto-3-deoxy-L-arabonate aldolase activity|2-dehydro-3-deoxy-L-pentonate glycolaldehyde-lyase (pyruvate-forming)|3-deoxy-D-pentulosonic acid aldolase|2-keto-3-deoxy-L-pentonate aldolase activity|2-keto-3-deoxy-D-xylonate aldolase activity RHEA:18545|EC:4.1.2.18|MetaCyc:4.1.2.18-RXN molecular_function owl:Class GO:0102429 biolink:NamedThing genistein-3-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: genistin + UDP-alpha-D-glucose <=> genistin 7-gentiobioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13831 molecular_function owl:Class GO:1903258 biolink:NamedThing sorbose import across plasma membrane The process in which sorbose is transported from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl sorbose import into cell mah 2014-08-06T09:21:53Z biological_process owl:Class GO:0035525 biolink:NamedThing NF-kappaB p50/p65 complex A heterodimer of NF-kappa B p50 and p65 subunits. tmpzr1t_l9r_go_relaxed.owl NF-kappa p105/RelA complex|NF-kappa p50/RelA complex|NF-kappa p105/p65 complex|NF-kappa B1/p65 complex|NF-kappa B1/RelA complex Note that the p50 subunit is encoded by NFKB1 gene in human and the p65 subunit is encoded by the RELA gene in human. Similar nomenclature is used in other vertebrate species. The p50 subunit has a precursor form p105 in some publications. bf 2010-05-05T10:45:13Z cellular_component owl:Class GO:0047251 biolink:NamedThing thiohydroximate beta-D-glucosyltransferase activity Catalysis of the reaction: phenylthioacetohydroximate + UDP-D-glucose = desulfoglucotropeolin + UDP. tmpzr1t_l9r_go_relaxed.owl desulfoglucosinolate-uridine diphosphate glucosyltransferase activity|thiohydroximate S-glucosyltransferase activity|uridine diphosphoglucose-thiohydroximate glucosyltransferase activity|N-hydroxythioamide S-beta-glucosyltransferase activity|UDPG:thiohydroximate glucosyltransferase activity|thiohydroximate glucosyltransferase activity|UDP-glucose:thiohydroximate S-beta-D-glucosyltransferase activity|UDP-glucose:N-hydroxy-2-phenylethanethioamide S-beta-D-glucosyltransferase activity RHEA:13757|MetaCyc:2.4.1.195-RXN|EC:2.4.1.195 molecular_function owl:Class GO:0004523 biolink:NamedThing RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl RNase H activity|ribonuclease H2 activity|endoribonuclease0 H activity|ribonuclease H activity|hybrid ribonuclease activity|endoribonuclease H|RNA*DNA hybrid ribonucleotidohydrolase activity|calf thymus ribonuclease H activity|RNase H3 activity|RNase H2 activity|hybridase (ribonuclease H)|RNase H1 activity|endoribonuclease H (calf thymus)|hybrid nuclease activity|hybridase activity|ribonuclease H3 activity|ribonuclease H1 activity Reactome:R-HSA-182795|Reactome:R-HSA-173769|EC:3.1.26.4|MetaCyc:3.1.26.4-RXN|Reactome:R-HSA-182859|Reactome:R-HSA-164528|Reactome:R-HSA-164519 Note that the EC recommended name for this enzyme activity is 'calf thymus ribonuclease H', even though it is found in many species. GO:0004524 molecular_function owl:Class GO:0047088 biolink:NamedThing dihydrosanguinarine 10-monooxygenase activity Catalysis of the reaction: dihydrosanguinarine + H(+) + NADPH + O(2) = 10-hydroxydihydrosanguinarine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl dihydrosanguinarine 10-hydroxylase activity|dihydrosanguinarine,NADPH:oxygen oxidoreductase (10-hydroxylating) EC:1.14.14.100|KEGG_REACTION:R04702|MetaCyc:1.14.13.56-RXN|RHEA:10528 molecular_function owl:Class GO:0050454 biolink:NamedThing coenzyme F420 hydrogenase activity Catalysis of the reaction: coenzyme F420 + H(2) + H(+) = reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl 8-hydroxy-5-deazaflavin-reducing hydrogenase activity|coenzyme F420-dependent hydrogenase activity|F420-reducing hydrogenase activity|hydrogen:coenzyme F420 oxidoreductase activity KEGG_REACTION:R03025|MetaCyc:COENZYME-F420-HYDROGENASE-RXN|EC:1.12.98.1|RHEA:23760 molecular_function owl:Class GO:0120044 biolink:NamedThing stereocilium base The tapered base of the stereocilium adjacent to where it joins the hair cell body. This region contains a rootlet comprised of bundled actin filaments which spans the joint and stabilizes the stereocilium. tmpzr1t_l9r_go_relaxed.owl stereocilium taper krc 2017-05-15T20:45:06Z cellular_component owl:Class GO:0097395 biolink:NamedThing response to interleukin-32 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-32 stimulus. tmpzr1t_l9r_go_relaxed.owl response to IL-32 pr 2012-10-23T13:21:16Z biological_process owl:Class GO:0052610 biolink:NamedThing beta-cryptoxanthin hydroxylase activity Catalysis of the reaction: beta-cryptoxanthin + a reduced electron acceptor + oxygen = zeaxanthin + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl carotene beta-ring hydroxylase activity|beta-carotene hydroxylase activity|beta-ring carotenoid 3-hydroxylase activity MetaCyc:RXN-8026|RHEA:30327 molecular_function owl:Class GO:0050231 biolink:NamedThing putrescine carbamoyltransferase activity Catalysis of the reaction: carbamoyl phosphate + putrescine = N-carbamoylputrescine + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl putrescine transcarbamylase activity|putrescine synthase activity|carbamoyl-phosphate:putrescine carbamoyltransferase activity|PTCase activity RHEA:21936|KEGG_REACTION:R01399|EC:2.1.3.6|MetaCyc:PUTRESCINE-CARBAMOYLTRANSFERASE-RXN molecular_function owl:Class GO:0034336 biolink:NamedThing misfolded RNA binding Binding to an RNA molecule that has assumed an incorrect conformation. tmpzr1t_l9r_go_relaxed.owl RNA chaperone molecular_function owl:Class GO:0044697 biolink:NamedThing HICS complex A multisubunit complex involved in cytokinesis. In the yeast Saccharomyces cerevisiae this complex consists of Sho1p, Hof1p, Inn1p and Cyk3p proteins. tmpzr1t_l9r_go_relaxed.owl jl 2012-09-19T13:30:22Z cellular_component owl:Class GO:0045160 biolink:NamedThing myosin I complex A myosin complex containing a class I myosin heavy chain and associated light chains; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments; myosin I complexes are involved in diverse processes related to membrane traffic and cell movement. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097410 biolink:NamedThing hippocampal interneuron differentiation The process in which a relatively unspecialized cell acquires specialized features of a hippocampal interneuron. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-04T10:58:28Z biological_process owl:Class GO:1990247 biolink:NamedThing N6-methyladenosine-containing RNA binding Binding to an RNA molecule modified by N6-methyladenosine (m6A), a modification present at internal sites of mRNAs and some non-coding RNAs. tmpzr1t_l9r_go_relaxed.owl sp 2013-12-04T06:55:29Z molecular_function owl:Class GO:0018584 biolink:NamedThing 2,4,5-trichlorophenoxyacetic acid oxygenase activity Catalysis of the reaction: 2,4,5-trichlorophenoxyacetic acid + 1/2 O2 = glyoxylate + 2,4,5-trichlorophenol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.99.-|UM-BBD_reactionID:r0359 molecular_function owl:Class GO:1901741 biolink:NamedThing positive regulation of myoblast fusion Any process that activates or increases the frequency, rate or extent of myoblast fusion. tmpzr1t_l9r_go_relaxed.owl up-regulation of myoblast fusion|activation of myoblast fusion|up regulation of myoblast fusion|upregulation of myoblast fusion rl 2013-01-11T20:24:03Z biological_process owl:Class GO:0030731 biolink:NamedThing guanidinoacetate N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanidinoacetate = S-adenosyl-L-homocysteine + creatine + H(+). tmpzr1t_l9r_go_relaxed.owl guanidoacetate methyltransferase activity|guanidinoacetate transmethylase activity|guanidinoacetate methyltransferase activity|methionine-guanidinoacetic transmethylase activity|S-adenosyl-L-methionine:N-guanidinoacetate methyltransferase activity|GA methylpherase activity RHEA:10656|EC:2.1.1.2|KEGG_REACTION:R01883|MetaCyc:GUANIDINOACETATE-N-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0042785 biolink:NamedThing evasion of host immune response via regulation of host cytokine network Any mechanism of active immune avoidance which works by regulating host cytokine networks, e.g. by secreting proteins that mimic cytokine receptors that act to sequester host cytokines and inhibit action. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active immune evasion via modulation of host cytokine network|active evasion of host immune response via regulation of host cytokine network|active immune evasion via regulation of host cytokine network|active evasion of immune response of other organism via regulation of cytokine network of other organism involved in symbiotic interaction GO:0051812 biological_process owl:Class GO:0072261 biolink:NamedThing metanephric extraglomerular mesangial cell proliferation involved in metanephros development The multiplication or reproduction of extraglomerular glomerular mesangium cells in the metanephros by cell division, resulting in the expansion of their population. Extraglomerular mesangial cells (also known as lacis cells, Goormaghtigh cells) are light-staining cells in the kidney found outside the glomerulus, near the vascular pole and macula densa. tmpzr1t_l9r_go_relaxed.owl metanephric lacis cell proliferation|metanephric Goormaghtigh proliferation mah 2010-03-30T02:14:17Z biological_process owl:Class GO:0048007 biolink:NamedThing antigen processing and presentation, exogenous lipid antigen via MHC class Ib The process in which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family. tmpzr1t_l9r_go_relaxed.owl antigen presentation, exogenous peptide antigen|exogenous lipid antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0033752 biolink:NamedThing acetylacetone-cleaving enzyme activity Catalysis of the reaction: pentane-2,4-dione + O2 = acetate + 2-oxopropanal. tmpzr1t_l9r_go_relaxed.owl acetylacetone-cleaving enzyme|diketone cleaving dioxygenase activity|acetylacetone:oxygen oxidoreductase activity|acetylacetone dioxygenase activity|diketone cleaving enzyme|Dke1 EC:1.13.11.50|RHEA:12877 molecular_function owl:Class GO:0050020 biolink:NamedThing L-arabinonate dehydratase activity Catalysis of the reaction: L-arabinonate = 2-dehydro-3-deoxy-L-arabinonate + H(2)O. tmpzr1t_l9r_go_relaxed.owl L-arabonate dehydrase activity|L-arabinonate hydro-lyase activity|L-arabinonate hydro-lyase (2-dehydro-3-deoxy-L-arabinonate-forming)|L-arabonate dehydratase activity KEGG_REACTION:R02522|RHEA:20968|EC:4.2.1.25|MetaCyc:L-ARABINONATE-DEHYDRATASE-RXN molecular_function owl:Class GO:0050093 biolink:NamedThing methanol dehydrogenase activity Catalysis of the reaction: methanol + NAD(+) = formaldehyde + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl methanol:NAD+ oxidoreductase activity KEGG_REACTION:R00605|RHEA:19401|MetaCyc:METHANOL-DEHYDROGENASE-RXN|EC:1.1.1.244 molecular_function owl:Class GO:0016607 biolink:NamedThing nuclear speck A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. tmpzr1t_l9r_go_relaxed.owl nuclear speckle|speckle focus|splicing speckle|nuclear speckles|speckle domain cellular_component owl:Class GO:0032145 biolink:NamedThing succinate-semialdehyde dehydrogenase binding Binding to succinate-semialdehyde dehydrogenase. tmpzr1t_l9r_go_relaxed.owl succinic semialdehyde dehydrogenase binding molecular_function owl:Class GO:0004338 biolink:NamedThing glucan exo-1,3-beta-glucosidase activity Catalysis of the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose. tmpzr1t_l9r_go_relaxed.owl exo-1,3-beta-glucosidase activity|beta-1,3-glucan exo-hydrolase activity|exo-beta-1,3-glucanase activity|exo-1,3-beta-D-glucanase activity|exo (1->3)-beta-glucanase activity|exo-1,3-beta-glucanase activity|1,3-beta-glucan glucohydrolase activity|exo-beta-(1->3)-D-glucanase activity|exo-beta-(1->3)-glucanohydrolase activity|glucan 1,3-beta-glucosidase activity|exo-beta-1,3-D-glucanase activity MetaCyc:3.2.1.58-RXN|EC:3.2.1.58 molecular_function owl:Class GO:1901785 biolink:NamedThing p-cresol catabolic process The chemical reactions and pathways resulting in the breakdown of p-cresol. tmpzr1t_l9r_go_relaxed.owl p-cresol breakdown|p-cresol catabolism|p-cresol degradation yaf 2013-01-16T11:04:04Z biological_process owl:Class GO:0033716 biolink:NamedThing nucleoside oxidase (hydrogen peroxide-forming) activity Catalysis of the reactions: adenosine + 2 O2 = 9-riburonosyladenine + 2 hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl nucleoside:oxygen 5'-oxidoreductase (hydrogen peroxide-forming) activity RHEA:15489|EC:1.1.3.39|MetaCyc:1.1.3.39-RXN Two other reactions might be associated with this activity: (1a) adenosine + O2 = 5'-dehydroadenosine + hydrogen peroxide, and (1b) 5'-dehydroadenosine + O2 = 9-riburonosyladenine + hydrogen peroxide. molecular_function owl:Class GO:0046669 biolink:NamedThing regulation of compound eye retinal cell programmed cell death Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the compound eye retina. tmpzr1t_l9r_go_relaxed.owl regulation of retinal cell programmed cell death biological_process owl:Class GO:0033839 biolink:NamedThing flavonol-3-O-glycoside glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a flavonol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside = UDP + a flavonol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:flavonol-3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside 2'''-O-beta-D-glucosyltransferase activity EC:2.4.1.240|MetaCyc:2.4.1.240-RXN|RHEA:23544 molecular_function owl:Class GO:0045301 biolink:NamedThing tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity Catalysis of the reaction: tRNA-(2-methylthio-N-6-isopentenyl adenosine) = tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine) + O2. 2-methylthio-N-6-isopentenyl adenosine is also known as ms2i6A; 2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine is also known as ms2io6A and 2-methylthio-cis-ribozeatin. tmpzr1t_l9r_go_relaxed.owl tRNA-(ms2io6A)-hydroxylase activity|tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyladenosine)-hydroxylase activity|2-methylthio-cis-ribozeatin hydroxylase activity molecular_function owl:Class GO:0036198 biolink:NamedThing dTMP salvage Any process which produces dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate) without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl dTMP biosynthesis via salvage pathway|deoxythymidine monophosphate biosynthesis via salvage pathway UniPathway:UPA00578 bf 2012-04-20T10:33:28Z biological_process owl:Class GO:0033231 biolink:NamedThing carbohydrate export The directed movement of carbohydrates out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006934 biolink:NamedThing substrate-bound cell migration, adhesion receptor recycling The directed movement of accumulated adhesion components such as integrins from the rear of a migrating cell toward the cell front, where they are available to form new protrusions and adhesions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1905334 biolink:NamedThing Swi5-Sfr1 complex binding Binding to a Swi5-Sfr1 complex. tmpzr1t_l9r_go_relaxed.owl Sae3-Mei5 complex binding al 2016-07-25T16:18:58Z molecular_function owl:Class GO:0040002 biolink:NamedThing collagen and cuticulin-based cuticle development Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl collagen and cuticulin-based cuticle synthesis|collagen and cuticulin-based cuticle biosynthetic process|collagen and cuticulin-based cuticle formation|collagen and cuticulin-based cuticle anabolism biological_process owl:Class GO:0032152 biolink:NamedThing meiotic septin complex A heterooligomeric septin complex that acts during meiotic cell division. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018799 biolink:NamedThing 4-hydroxybenzoate decarboxylase activity Catalysis of the reaction: 4-hydroxybenzoate + H(+) = CO(2) + phenol. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoate carboxy-lyase activity|p-hydroxybenzoate decarboxylase activity|4-hydroxybenzoate carboxy-lyase (phenol-forming) UM-BBD_reactionID:r0159|MetaCyc:4-HYDROXYBENZOATE-DECARBOXYLASE-RXN|RHEA:10876|KEGG_REACTION:R01238|EC:4.1.1.61 molecular_function owl:Class GO:0033792 biolink:NamedThing bile-acid 7alpha-dehydroxylase activity Catalysis of the reactions: deoxycholate + FAD + H2O = cholate + FADH2, and lithocholate + FAD + H2O = chenodeoxycholate + FADH2. tmpzr1t_l9r_go_relaxed.owl 7alpha-dehydroxylase activity|cholate 7alpha-dehydroxylase activity|bile acid 7-dehydroxylase activity|deoxycholate:FAD oxidoreductase (7alpha-dehydroxylating) activity|deoxycholate:NAD+ oxidoreductase activity MetaCyc:RXN-8658|MetaCyc:RXN-8659|EC:1.17.99.5 molecular_function owl:Class GO:0021928 biolink:NamedThing basket cell precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to basket cells. A cerebellar basket cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0072219 biolink:NamedThing metanephric cortical collecting duct development The process whose specific outcome is the progression of the metanephric cortical collecting duct over time, from its formation to the mature structure. The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-18T03:34:52Z biological_process owl:Class GO:0000950 biolink:NamedThing branched-chain amino acid catabolic process to alcohol via Ehrlich pathway The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanol, 2-methylbutanol, or 2-methylpropanol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols. tmpzr1t_l9r_go_relaxed.owl branched chain family amino acid catabolic process to alcohol via Ehrlich pathway biological_process owl:Class GO:0004352 biolink:NamedThing glutamate dehydrogenase (NAD+) activity Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl glutamic dehydrogenase activity|glutamic acid dehydrogenase|NAD:glutamate oxidoreductase activity|NAD-linked glutamic dehydrogenase activity|NAD-specific glutamate dehydrogenase activity|glutamate dehydrogenase (NAD)|L-glutamate:NAD+ oxidoreductase (deaminating)|NAD-dependent glutamate dehydrogenase activity|NAD-linked glutamate dehydrogenase activity|NAD-specific glutamic dehydrogenase activity|NAD-dependent glutamic dehydrogenase activity|L-glutamate dehydrogenase|NADH-linked glutamate dehydrogenase activity|glutamate oxidoreductase activity|NAD-glutamate dehydrogenase activity EC:1.4.1.2|MetaCyc:GLUTAMATE-DEHYDROGENASE-RXN|RHEA:15133 molecular_function owl:Class GO:0050639 biolink:NamedThing 10-hydroxytaxane O-acetyltransferase activity Catalysis of the reaction: 10-desacetyltaxuyunnanin C + acetyl-CoA = CoA + taxuyunnanin C. tmpzr1t_l9r_go_relaxed.owl acetyl coenzyme A: 10-hydroxytaxane O-acetyltransferase activity|acetyl-CoA:taxan-10beta-ol O-acetyltransferase|acetyl coenzyme A:10-hydroxytaxane O-acetyltransferase activity MetaCyc:2.3.1.163-RXN|EC:2.3.1.163|RHEA:18837|KEGG_REACTION:R07252 molecular_function owl:Class GO:0018676 biolink:NamedThing (S)-limonene 7-monooxygenase activity Catalysis of the reaction: (4S)-limonene + H(+) + NADPH + O(2) = (4S)-perillyl alcohol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl (-)-limonene 7-monooxygenase activity KEGG_REACTION:R02470|RHEA:23432|MetaCyc:--LIMONENE-7-MONOOXYGENASE-RXN|UM-BBD_reactionID:r0728|EC:1.14.14.52 molecular_function owl:Class GO:0046960 biolink:NamedThing sensitization An increased in a behavioral response to a repeated stimulus. For example, a shock to the tail of the marine snail Aplysia, to which the snail responds by withdrawing its gill, will result in increased gill withdrawal the next time the skin is touched. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Sensitization biological_process owl:Class GO:0050593 biolink:NamedThing N-methylcoclaurine 3'-monooxygenase activity Catalysis of the reaction: (S)-N-methylcoclaurine + H(+) + NADPH + O(2) = (S)-3'-hydroxy-N-methylcoclaurine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl N-methylcoclaurine 3'-hydroxylase activity|(S)-N-methylcoclaurine 3'-hydroxylase activity|(S)-N-methylcoclaurine,NADPH:oxygen oxidoreductase (3'-hydroxylating)|cytochrome P450 80B1 activity KEGG_REACTION:R05732|EC:1.14.14.102|RHEA:16649|MetaCyc:1.14.13.71-RXN molecular_function owl:Class GO:0034378 biolink:NamedThing chylomicron assembly The non-covalent aggregation and arrangement of proteins and lipids in the intestine to form a chylomicron. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030544 biolink:NamedThing Hsp70 protein binding Binding to a Hsp70 protein, heat shock proteins around 70kDa in size. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031457 biolink:NamedThing glycine betaine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine betaine, N-trimethylglycine. tmpzr1t_l9r_go_relaxed.owl N-trimethylglycine catabolic process|N-trimethylglycine catabolism|glycine betaine catabolism|glycine betaine degradation|glycine betaine breakdown biological_process owl:Class GO:0034537 biolink:NamedThing 2-hydroxy-3-methylbenzalpyruvate hydratase-aldolase activity Catalysis of the reaction: 2-hydroxy-3-methylbenzalpyruvate + H2O = pyruvate + 3-methylsalicylaldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0783 molecular_function owl:Class GO:0033794 biolink:NamedThing sarcosine reductase activity Catalysis of the reaction: acetyl phosphate + methylamine + thioredoxin disulfide = N-methylglycine + phosphate + thioredoxin. tmpzr1t_l9r_go_relaxed.owl acetyl-phosphate methylamine:thioredoxin disulfide oxidoreductase (N-methylglycine-forming) activity RHEA:12825|EC:1.21.4.3 molecular_function owl:Class GO:0019442 biolink:NamedThing tryptophan catabolic process to acetyl-CoA The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl tryptophan degradation to acetyl-CoA|tryptophan breakdown to acetyl-CoA MetaCyc:TRYPTOPHAN-DEGRADATION-1 biological_process owl:Class GO:0031563 biolink:NamedThing mating projection tip polarisome Protein complex that has a role in determining cell polarity, found at the tip of the mating projection in unicellular fungi exposed to mating pheromone. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090553 biolink:NamedThing unicellular trichome tip A cell projection part that is the apical most portion of a unicellular trichome apex. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-25T11:56:56Z cellular_component owl:Class GO:0008798 biolink:NamedThing beta-aspartyl-peptidase activity Catalysis of the cleavage of a beta-linked aspartic residue from the N-terminus of a polypeptide. tmpzr1t_l9r_go_relaxed.owl beta-aspartyl dipeptidase activity|beta-aspartyl peptidase activity EC:3.4.19.5|Reactome:R-HSA-5692495|Reactome:R-HSA-5696365|MetaCyc:3.4.19.5-RXN molecular_function owl:Class GO:0046715 biolink:NamedThing active borate transmembrane transporter activity Enables the transport of borate across a membrane against the concentration gradient. tmpzr1t_l9r_go_relaxed.owl borate transmembrane transporter activity|efflux-type boron transporter|borate uptake transmembrane transporter activity|boron transmembrane transporter activity|efflux-type borate transporter|boron uptake transmembrane transporter activity dhl 2009-05-19T04:09:56Z GO:0080138 molecular_function owl:Class GO:0051264 biolink:NamedThing mono-olein transacylation activity Catalysis of the reaction: mono-olein + mono-olein = diolein + glycerol. Mono-olein, also known as mono-oleoylglycerol, is the monoglyceride formed from oleic acid, 9-octodecenoic acid; diolein is also known as dioleoylglycerol. tmpzr1t_l9r_go_relaxed.owl mono-oleoylglycerol O-acyltransferase activity|acyl-CoA-independent mono-olein transacylation|MOG transacylation|monoolein transacylation|mono-oleoylglycerol transacylase activity|monooleoylglycerol transacylase activity|monooleoylglycerol O-acyltransferase activity molecular_function owl:Class GO:0080078 biolink:NamedThing tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a tricaffeoyl spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-14T04:01:25Z molecular_function owl:Class GO:0044201 biolink:NamedThing host cell nuclear inner membrane The inner, i.e. lumen-facing, lipid bilayer of the host nuclear envelope. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T11:08:33Z cellular_component owl:Class GO:1990888 biolink:NamedThing 2-polyprenyl-6-hydroxyphenol O-methyltransferase activity Catalysis of the reaction: 2-polyprenyl-6-hydroxyphenol + S-adenosyl-L-methionine = 2-polyprenyl-6-methoxyphenol + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl sl 2015-10-28T22:31:13Z molecular_function owl:Class GO:0102874 biolink:NamedThing 1-16:0-2-18:2-digalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-16:0-2-18:2-digalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-16:0-2-18:3-digalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.35|MetaCyc:RXN-8365 molecular_function owl:Class GO:0106136 biolink:NamedThing lectin-induced modified bacterial internalization The process in which an organism effects a change in the structure or function of a symbiont organism, mediated by secretion of lectins which bind to the bacterial surface. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl LIMBI hjd 2018-08-09T17:27:18Z biological_process owl:Class GO:0018405 biolink:NamedThing protein-keratan sulfate linkage via keratan sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine Keratan sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and threonine residues. tmpzr1t_l9r_go_relaxed.owl protein-keratan sulphate linkage via keratan sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine RESID:AA0247 biological_process owl:Class GO:0072728 biolink:NamedThing response to Gentian violet Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Gentian violet stimulus. tmpzr1t_l9r_go_relaxed.owl response to crystal violet|response to {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride mah 2012-05-31T11:23:25Z biological_process owl:Class GO:0033880 biolink:NamedThing phenylacetyl-CoA hydrolase activity Catalysis of the reaction: H(2)O + phenylglyoxylyl-CoA = CoA + H(+) + phenylglyoxylate. tmpzr1t_l9r_go_relaxed.owl phenylglyoxylyl-CoA hydrolase activity RHEA:15337|MetaCyc:3.1.2.25-RXN|EC:3.1.2.25|KEGG_REACTION:R07294 molecular_function owl:Class GO:0047013 biolink:NamedThing cholate 12-alpha dehydrogenase activity Catalysis of the reaction: cholate + NADP(+) = 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 12alpha-hydroxysteroid:NADP+ 12-oxidoreductase activity|12alpha-hydroxysteroid dehydrogenase activity|NAD-dependent 12alpha-hydroxysteroid dehydrogenase activity|12alpha-hydroxy steroid dehydrogenase activity|12-alpha-hydroxysteroid dehydrogenase activity|NADP-12alpha-hydroxysteroid dehydrogenase activity RHEA:14129|MetaCyc:1.1.1.176-RXN|KEGG_REACTION:R02793|EC:1.1.1.176 molecular_function owl:Class GO:0047975 biolink:NamedThing guanosine phosphorylase activity Catalysis of the reaction: guanosine + phosphate = guanine + D-ribose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl guanosine:phosphate D-ribosyltransferase activity|guanosine:phosphate alpha-D-ribosyltransferase activity RHEA:13233|MetaCyc:GUANPHOSPHOR-RXN|EC:2.4.2.15 molecular_function owl:Class GO:0030742 biolink:NamedThing GTP-dependent protein binding Binding to a protein or protein complex when at least one of the interacting partners is in the GTP-bound state. tmpzr1t_l9r_go_relaxed.owl This term may be used to annotate both partners in a GTP-dependent binding interaction, both the GTP-bound protein and the protein(s) which interact with it. molecular_function owl:Class GO:0052819 biolink:NamedThing heteroglycan 2-alpha-mannosyltransferase activity Catalysis of the reaction: heteroglycan + GDP-mannose = (1->2)-alpha-D-mannosylheteroglycan + GDP. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:heteroglycan 2-alpha-D-mannosyltransferase activity|guanosine diphosphomannose-heteroglycan 2-alpha-mannosyltransferase activity|GDP mannose 2-alpha-mannosyltransferase activity|heteropolysaccharide 2-alpha-mannosyltransferase activity KEGG_REACTION:R03768|EC:2.4.1.48|MetaCyc:2.4.1.48-RXN ai 2011-10-27T12:36:19Z molecular_function owl:Class GO:0140393 biolink:NamedThing norsolorinic acid ketoreductase activity Catalysis of the reaction: (1'S)-averantin + NADP(+) <=> norsolorinic acid + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9480|RHEA:35447|KEGG_REACTION:R10309|EC:1.1.1.349 pg 2019-11-28T14:38:12Z molecular_function owl:Class GO:0045703 biolink:NamedThing ketoreductase activity Catalysis of the reduction of a ketone group to form the corresponding alcohol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050183 biolink:NamedThing phosphatidylcholine 12-monooxygenase activity Catalysis of the reaction: 1-acyl-2-oleoyl-sn-glycero-3-phosphocholine + H(+) + NADH + O(2) = 1-acyl-2-[(S)-12-hydroxyoleoyl]-sn-glycero-3-phosphocholine + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 1-acyl-2-oleoyl-sn-glycero-3-phosphocholine,NADH:oxygen oxidoreductase (12-hydroxylating)|oleate delta12-hydroxylase activity|oleate D12-hydroxylase activity|oleate delta12-monooxygenase activity|ricinoleic acid synthase activity|oleate Delta(12)-hydroxylase activity EC:1.14.18.4|MetaCyc:PHOSPHATIDYLCHOLINE-12-MONOOXYGENASE-RXN|KEGG_REACTION:R03476|RHEA:46360 molecular_function owl:Class GO:0034954 biolink:NamedThing diphenyl ether 2,3-dioxygenase activity Catalysis of the reaction: diphenyl ether + O2 = 2,3-dihydroxydiphenyl ether. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r1450 molecular_function owl:Class GO:0034837 biolink:NamedThing 2-mercaptobenzothiazole-cis-6,7-dihydrodiol dehydrogenase activity Catalysis of the reaction: 2-mercaptobenzothiazole-cis-6,7-dihydrodiol = 6,7-dihydroxy-2-mercaptobenzothiazole + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1179 molecular_function owl:Class GO:0031462 biolink:NamedThing Cul2-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul2 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein. tmpzr1t_l9r_go_relaxed.owl VBC complex|cullin-RING ligase 2|CDL2 complex|CBC complex|CRL2 complex|SCF2 complex|EC2S complex|ECS complex cellular_component owl:Class GO:0036191 biolink:NamedThing indolin-2-one monooxygenase activity Catalysis of the reaction: indolin-2-one + NAD(P)H + H+ + O2 = 3-hydroxyindolin-2-one + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl indolin-2-one,NAD(P)H:oxygen oxidoreductase (3-hydroxylating) EC:1.14.14.157|RHEA:31919|KEGG_REACTION:R07421 bf 2012-04-19T11:38:01Z molecular_function owl:Class GO:0019559 biolink:NamedThing histidine catabolic process to imidazol-5-yl-lactate The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including imidazol-5-yl-lactate. tmpzr1t_l9r_go_relaxed.owl histidine breakdown to imidazol-5-yl-lactate|histidine degradation to imidazol-5-yl-lactate MetaCyc:HISTDEG-PWY biological_process owl:Class GO:0070557 biolink:NamedThing PCNA-p21 complex A protein complex that contains the cyclin-dependent protein kinase inhibitor p21WAF1/CIP1 bound to PCNA; formation of the complex inhibits DNA replication. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102970 biolink:NamedThing 7-deoxyloganetic acid glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 7-deoxyloganetate <=> H+ + 7-deoxyloganate + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:39895|EC:2.4.1.323|MetaCyc:RXN-9372 molecular_function owl:Class GO:0061069 biolink:NamedThing male urethra development The progression of the male urethra over time from its initial formation to the mature structure. The male urethra is a renal system organ that carries urine from the bladder through the penis to outside the body. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-12T08:28:19Z biological_process owl:Class GO:0062180 biolink:NamedThing 25-hydroxycholecalciferol-23-hydroxylase activity Catalysis of the reaction: calcidiol + 2 H(+) + O2 + 2 reduced [adrenodoxin] = (23S)-23,25-dihydroxycalciol + H2O + 2 oxidized [adrenodoxin]. tmpzr1t_l9r_go_relaxed.owl RHEA:46616 dph 2019-11-26T17:12:22Z molecular_function owl:Class GO:0036001 biolink:NamedThing 'de novo' pyridoxal 5'-phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal 5'-phosphate, the active form of vitamin B6, from simpler components. tmpzr1t_l9r_go_relaxed.owl 'de novo' pyridoxal 5'-phosphate formation|'de novo' pyridoxal 5'-phosphate anabolism|'de novo' pyridoxal phosphate biosynthetic process|'de novo' pyridoxal 5'-phosphate synthesis|'de novo' PLP biosynthesis|'de novo' pyridoxal 5'-phosphate biosynthesis MetaCyc:PYRIDOXSYN-PWY bf 2011-09-06T02:04:53Z biological_process owl:Class GO:0080105 biolink:NamedThing 6-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 6-methylthiopropyl-glucosinolate = 6-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T04:28:55Z molecular_function owl:Class GO:0102093 biolink:NamedThing acrylate:acyl-coA CoA transferase activity Catalysis of the reaction: acryloyl-CoA + H2O <=> acrylate + coenzyme A + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10985 molecular_function owl:Class GO:0033498 biolink:NamedThing galactose catabolic process via D-galactonate The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate D-galactonate. tmpzr1t_l9r_go_relaxed.owl galactose breakdown via D-galactonate|galactose catabolism via D-galactonate|galactose degradation via D-galactonate MetaCyc:GALDEG-PWY biological_process owl:Class GO:0019603 biolink:NamedThing toluene oxidation via 4-hydroxytoluene The degradation of toluene to form p-hydroxybenzoate; the first step in the pathway is the oxidation of toluene to form 4-hydroxytoluene (4-cresol). tmpzr1t_l9r_go_relaxed.owl MetaCyc:TOLUENE-DEG-4-OH-PWY biological_process owl:Class GO:0019251 biolink:NamedThing anaerobic cobalamin biosynthetic process The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12) in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic vitamin B12 biosynthesis|vitamin B12 biosynthesis, anaerobic|vitamin B12 biosynthetic process, anaerobic|anaerobic vitamin B12 biosynthetic process|anaerobic cobalamin formation|anaerobic cobalamin biosynthesis|anaerobic cobalamin anabolism|cobalamin biosynthetic process, anaerobic|cobalamin biosynthesis, anaerobic|anaerobic cobalamin synthesis MetaCyc:COBALSYN-PWY biological_process owl:Class GO:0140376 biolink:NamedThing innate immune receptor activity Receiving a signal and transmitting it in a cell to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl pg 2019-10-18T14:21:28Z molecular_function owl:Class GO:0061158 biolink:NamedThing 3'-UTR-mediated mRNA destabilization An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA. tmpzr1t_l9r_go_relaxed.owl dph 2010-06-22T08:44:39Z biological_process owl:Class GO:1904613 biolink:NamedThing cellular response to 2,3,7,8-tetrachlorodibenzodioxine Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 2,3,7,8-tetrachlorodibenzodioxine stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to dioxin|cellular response to TCDD sl 2015-08-27T19:01:58Z biological_process owl:Class GO:0043335 biolink:NamedThing protein unfolding The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004780 biolink:NamedThing sulfate adenylyltransferase (ADP) activity Catalysis of the reaction: ADP + H(+) + sulfate = 5'-adenylyl sulfate + phosphate. tmpzr1t_l9r_go_relaxed.owl ADP:sulfate adenylyltransferase activity|adenosine diphosphate sulfurylase activity|sulphate adenylyltransferase (ADP) activity|sulfate (adenosine diphosphate) adenylyltransferase activity|ADP-sulfurylase activity EC:2.7.7.5|RHEA:16529|MetaCyc:SULFATE-ADENYLYLTRANSFERASE-ADP-RXN|KEGG_REACTION:R00530 molecular_function owl:Class GO:0103032 biolink:NamedThing tartronate semialdehyde reductase activity Catalysis of the reaction: D-glycerate + NAD <=> H+ + 2-hydroxy-3-oxopropanoate + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:18845|MetaCyc:RXN0-5289 molecular_function owl:Class GO:0102669 biolink:NamedThing isoflavone-7-O-glucoside beta-glucosidase activity Catalysis of the reaction: daidzein 7-O-beta-D-glucoside + H2O <=> daidzein + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-3591 molecular_function owl:Class GO:0061758 biolink:NamedThing 2-hydroxyglutarate dehydrogenase activity, forward reaction Catalysis of the reaction: (S)-2-hydroxyglutarate + acceptor -> 2-oxoglutarate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl alpha-ketoglutarate reductase activity, reverse reaction RHEA:21253 dph 2016-03-07T08:28:58Z molecular_function owl:Class GO:0016231 biolink:NamedThing beta-N-acetylglucosaminidase activity Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-glucosamine residues in N-acetyl-beta-D-glucosaminides. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010274 biolink:NamedThing hydrotropism Growth or movement in a sessile organism toward or away from water, as of the roots of a plant. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Hydrotropism biological_process owl:Class GO:0019254 biolink:NamedThing carnitine metabolic process, CoA-linked The chemical reactions and pathways involving carnitine, where metabolism is linked to CoA. tmpzr1t_l9r_go_relaxed.owl carnitine metabolism, CoA-linked MetaCyc:CARNMET-PWY biological_process owl:Class GO:0052823 biolink:NamedThing 2-hydroxy-6-oxonona-2,4,7-trienedioate hydrolase activity Catalysis of the reaction: (2E,4Z,7E)-2-hydroxy-6-oxonona-2,4,7-trienedioate + H2O = (2E)-2-hydroxypenta-2,4-dienoate + fumarate + H+. tmpzr1t_l9r_go_relaxed.owl 2-hydroxy-6-ketonona-2,4,7-trienedoic acid hydrolase activity|(2E,4Z,7E)-2-hydroxy-6-oxonona-2,4,7-trienedioate fumarylhydrolase activity EC:3.7.1.14|MetaCyc:RXN-12070|UM-BBD_reactionID:r1622|RHEA:25046 ai 2011-10-28T03:28:37Z molecular_function owl:Class GO:1902200 biolink:NamedThing 3-methylbut-2-enoyl-CoA(4-) biosynthetic process The chemical reactions and pathways resulting in the formation of 3-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 3-methylbut-2-enoyl-CoA(4-) formation|3-methylbut-2-enoyl-CoA(4-) anabolism|3-methylbut-2-enoyl-CoA(4-) synthesis|3-methylbut-2-enoyl-CoA(4-) biosynthesis ms 2013-06-06T09:56:21Z biological_process owl:Class GO:0021963 biolink:NamedThing spinothalamic tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling. tmpzr1t_l9r_go_relaxed.owl dorsolateral tract of Lissauer morphogenesis biological_process owl:Class GO:0018521 biolink:NamedThing 1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate dehydrogenase activity Catalysis of the reaction: 1,6-dihydroxy-2-methylcyclohexa-2,4-dienecarboxylate + NAD(+) = 3-methylcatechol + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl 1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate:NAD+ oxidoreductase (decarboxylating) MetaCyc:1.3.1.68-RXN|RHEA:15657|EC:1.3.1.68|UM-BBD_reactionID:r0224|KEGG_REACTION:R05314 molecular_function owl:Class GO:0050697 biolink:NamedThing 1,1,2-trichloroethene reductive dehalogenase activity Catalysis of the reaction: trichloroethene + 2 H+ + 2 e- = HCl + 1,2-dichloroethene. tmpzr1t_l9r_go_relaxed.owl TCE-reductive dehalogenase activity|1,1,2-trichloroethylene reductive dehalogenase activity MetaCyc:TCEREDCHLOR-RXN|UM-BBD_enzymeID:e0271 molecular_function owl:Class GO:0047072 biolink:NamedThing 2,3-dihydroxybenzoate 2,3-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxybenzoate + O(2) = 2-carboxy-cis,cis-muconate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybenzoate 2,3-oxygenase activity|2,3-dihydroxybenzoate:oxygen 2,3-oxidoreductase (decyclizing) KEGG_REACTION:R01506|RHEA:15369|EC:1.13.11.28|MetaCyc:1.13.11.28-RXN molecular_function owl:Class GO:0051202 biolink:NamedThing phytochromobilin metabolic process The chemical reactions and pathways involving phytochromobilin, the linear tetrapyrrole chromophore required for plant phytochrome photoactivity. tmpzr1t_l9r_go_relaxed.owl phytochromobilin metabolism biological_process owl:Class GO:0030526 biolink:NamedThing granulocyte macrophage colony-stimulating factor receptor complex The heterodimeric receptor for granulocyte macrophage colony-stimulating factor. tmpzr1t_l9r_go_relaxed.owl granulocyte macrophage colony stimulating factor receptor complex|GM-CSF receptor complex cellular_component owl:Class GO:0103008 biolink:NamedThing 4-chloro-2-methylphenoxyacetate oxygenase activity Catalysis of the reaction: 4-chloro-2-methylphenoxyacetate + 2-oxoglutarate + O2 <=> 4-chloro-2-methylphenol + 2-oxo monocarboxylic acid anion + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9864 molecular_function owl:Class GO:0033934 biolink:NamedThing glucan 1,4-alpha-maltotriohydrolase activity Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in amylaceous polysaccharides, to remove successive maltotriose residues from the non-reducing chain ends. tmpzr1t_l9r_go_relaxed.owl exo-maltotriohydrolase activity|1,4-alpha-D-glucan maltotriohydrolase activity|maltotriohydrolase activity EC:3.2.1.116|MetaCyc:3.2.1.116-RXN molecular_function owl:Class GO:0044286 biolink:NamedThing peg and socket contact A cell-cell contact zone that consists of membrane invaginations extending from either cell, which contain tight-, gap-, and adherens junctions. Peg and socket contacts form between endothelial cells and pericytes, and between lens fiber cells. tmpzr1t_l9r_go_relaxed.owl ball and socket contact NIF_Subcellular:sao1943947957 jl 2010-02-02T10:15:27Z cellular_component owl:Class GO:0034877 biolink:NamedThing isonicotinate dehydrogenase activity Catalysis of the reaction: isonicotinate + acceptor + H2O = 2-hydroxyisonicotinate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1337 molecular_function owl:Class GO:0061670 biolink:NamedThing evoked neurotransmitter secretion Neurotransmitter secretion that occurs in the presence of the action of a secretagogue or a presynaptic action potential. tmpzr1t_l9r_go_relaxed.owl stimulus-dependant neurotransmitter secretion dph 2014-11-17T08:06:21Z biological_process owl:Class GO:0033705 biolink:NamedThing GDP-4-dehydro-6-deoxy-D-mannose reductase activity Catalysis of the reaction: GDP-6-deoxy-D-mannose + NAD(P)+ = GDP-4-dehydro-6-deoxy-D-mannose + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl Rmd|GDP-6-deoxy-D-mannose:NAD(P)+ 4-oxidoreductase (D-rhamnose-forming) activity|GDP-4-keto-6-deoxy-D-mannose reductase activity|GDP-6-deoxy-D-lyxo-4-hexulose reductase activity EC:1.1.1.281|MetaCyc:GDP-4-DEHYDRO-D-RHAMNOSE-REDUCTASE-RXN Note that this enzyme differs from EC:1.1.1.187, GDP-4-dehydro-D-rhamnose reductase, in that the only product formed is GDP-D-rhamnose (GDP-6-deoxy-D-mannose). molecular_function owl:Class GO:0019681 biolink:NamedThing acetyl-CoA assimilation pathway The pathways by which acetyl-CoA is processed and converted into alpha-ketoglutarate (2-oxoglutarate); methanogenic archaea use these pathways to assimilate acetyl-CoA into the cell. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA catabolic process to alpha-ketoglutarate|acetyl-CoA catabolic process to alpha-oxoglutarate|acetyl-CoA catabolism to alpha-oxoglutarate|acetyl-CoA catabolic process to 2-ketoglutarate|acetyl-CoA catabolism to 2-ketoglutarate|acetyl-CoA catabolism to 2-oxoglutarate|acetyl-CoA catabolism to alpha-ketoglutarate|acetyl-CoA catabolic process to 2-oxoglutarate biological_process owl:Class GO:0102460 biolink:NamedThing kaempferol 3-gentiobioside 7-O-rhamnosyltransferase activity Catalysis of the reaction: kaempferol-3-gentiobioside + UDP-L-rhamnose = H+ + kaempferol-3-O-gentiobioside-7-O-rhamnoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14008 molecular_function owl:Class GO:0047781 biolink:NamedThing citrullinase activity Catalysis of the reaction: H2O + citrulline = NH3 + CO2 + L-ornithine. tmpzr1t_l9r_go_relaxed.owl citrulline ureidase activity|L-citrulline 5-N-carbamoyldihydrolase activity|L-citrulline N5-carbamoyldihydrolase activity|citrulline hydrolase activity RHEA:11940|MetaCyc:CITRULLINASE-RXN|EC:3.5.1.20 molecular_function owl:Class GO:0031926 biolink:NamedThing pyridoxal phosphate transmembrane transporter activity Enables the transfer of pyridoxal phosphate from one side of a membrane to the other. Pyridoxal phosphate is pyridoxal phosphorylated at the hydroxymethyl group of C-5, and is the active form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0070060 biolink:NamedThing 'de novo' actin filament nucleation The actin nucleation process in which actin monomers combine in the absence of any existing actin filaments; elongation of the actin oligomer formed by nucleation leads to the formation of an unbranched filament. tmpzr1t_l9r_go_relaxed.owl unbranched actin filament nucleation|formin-mediated actin filament nucleation biological_process owl:Class GO:0034834 biolink:NamedThing 2-mercaptobenzothiazole dioxygenase activity Catalysis of the reaction: 2-mercaptobenzothiazole + O2 + 2 H+ + 2 e- = 2-mercaptobenzothiazole-cis-6,7-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1177 molecular_function owl:Class GO:1990640 biolink:NamedThing inositol-2,4,5-triphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 2,4,5-trisphosphate + H2O = 1D-myo-inositol 2,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2015-02-11T18:20:40Z molecular_function owl:Class GO:0018408 biolink:NamedThing peptidyl-thyronine iodination to form 3',3'',5',5''-tetraiodo-L-thyronine The iodination of peptidyl-thyronine to form peptidyl-3',3'',5',5''-tetraiodo-L-thyronine (L-thyroxine). tmpzr1t_l9r_go_relaxed.owl RESID:AA0178 biological_process owl:Class GO:1905329 biolink:NamedThing sphingoid long-chain base transport The directed movement of a sphingoid long-chain base, sometimes referred to as long-chain base, or sphingoid base, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Sphingoid long-chain bases are long-chain aliphatic amines that are the fundamental building blocks of sphingolipids. The main mammalian sphingoid long-chain bases are dihydrosphingosine and sphingosine, while dihydrosphingosine and phytosphingosine are the main sphingoid long-chain bases in yeast. tmpzr1t_l9r_go_relaxed.owl long-chain base transport|dihydrosphingosine transport|sphingoid base(1+) transport|sphingoid transport|sphingosine transport|phytosphingosine transport tb 2016-07-22T01:40:59Z biological_process owl:Class GO:1905108 biolink:NamedThing guanosine binding Binding to guanosine. tmpzr1t_l9r_go_relaxed.owl al 2016-04-05T08:30:47Z molecular_function owl:Class GO:0018751 biolink:NamedThing 3,5-dichlorophenylcarboximide hydrolase activity Catalysis of the reaction: 3,5-dichlorophenylcarboximide + OH- = (3,5-dichlorophenylurea)acetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0707 molecular_function owl:Class GO:0099615 biolink:NamedThing (D)-2-hydroxyglutarate-pyruvate transhydrogenase activity Catalysis of the reaction: (R)-2-hydroxyglutarate + pyruvate = alpha-ketoglutarate + D-lactate, with FAD functioning as an intermediate hydrogen acceptor. tmpzr1t_l9r_go_relaxed.owl D-2HG-pyruvate transhydrogenase activity|R-2-hydroxyglutarate alpha-pyruvate transhydrogenase activity molecular_function owl:Class GO:0060155 biolink:NamedThing platelet dense granule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a platelet dense granule. A platelet dense granule is an electron-dense granule occurring in blood platelets that stores and secretes adenosine nucleotides and serotonin. They contain a highly condensed core consisting of serotonin, histamine, calcium, magnesium, ATP, ADP, pyrophosphate and membrane lysosomal proteins. tmpzr1t_l9r_go_relaxed.owl platelet dense body organization and biogenesis|platelet dense granule organization and biogenesis|bull's eye body organization and biogenesis|platelet dense granule organisation biological_process owl:Class GO:0061754 biolink:NamedThing negative regulation of circulating fibrinogen levels Any process that reduces the quantity of fibrinogen circulating in the bloodstream. tmpzr1t_l9r_go_relaxed.owl dph 2016-02-29T16:19:09Z biological_process owl:Class GO:0034927 biolink:NamedThing pyrene 1,2-monooxygenase activity Catalysis of the reaction: pyrene + O2 + 2 H+ + 2 e- = pyrene-1,2-oxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0943 molecular_function owl:Class GO:0004146 biolink:NamedThing dihydrofolate reductase activity Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl pteridine reductase:dihydrofolate reductase activity|folic reductase activity|7,8-dihydrofolate reductase activity|dihydrofolate reductase:thymidylate synthase activity|5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase activity|dihydrofolate reduction|dihydrofolic reductase activity|folic acid reductase activity|tetrahydrofolate dehydrogenase activity|NADPH-dihydrofolate reductase activity|DHFR|thymidylate synthetase-dihydrofolate reductase activity|dihydrofolic acid reductase activity RHEA:15009|EC:1.5.1.3|Reactome:R-HSA-1497794|MetaCyc:DIHYDROFOLATEREDUCT-RXN molecular_function owl:Class GO:0019422 biolink:NamedThing disproportionation of elemental sulfur The process in which sulfur compounds with an intermediate oxidation state serve as both electron donors and electron acceptors in an energy-generating redox process. The reaction takes place anaerobically, in light and in the absence of CO2. tmpzr1t_l9r_go_relaxed.owl disproportionation of elemental sulphur MetaCyc:P203-PWY biological_process owl:Class GO:1902097 biolink:NamedThing positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium Any positive regulation of transcription from RNA polymerase II promoter that is involved in defense response to Gram-negative bacterium. tmpzr1t_l9r_go_relaxed.owl upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacterium|up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|upregulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|positive regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|up-regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|stimulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacteria|stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|up regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|positive regulation of transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity|stimulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|up regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium|up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacterium|upregulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria|activation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacterium|up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|positive regulation of global transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity|positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacteria|up-regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacteria|activation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity|up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium|activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria|positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacteria|positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacterium|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity kmv 2013-04-30T16:54:30Z biological_process owl:Class GO:0034919 biolink:NamedThing butyryl-CoA 2-C-propionyltransferase activity Catalysis of the reaction: 2-methyl-3-oxohexanoyl-CoA + CoA = propanoyl-CoA + butyryl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0931 molecular_function owl:Class GO:0102638 biolink:NamedThing [1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase activity Catalysis of the reaction: 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + [1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate = [1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.105|MetaCyc:RXN-15734 molecular_function owl:Class GO:0072548 biolink:NamedThing dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity Catalysis of the reaction: dicoumaroyl monocaffeoyl spermidine + NADPH + O2 = monocoumaroyl dicaffeoyl spermidine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl mah 2011-01-25T02:57:22Z molecular_function owl:Class GO:0043785 biolink:NamedThing cinnamoyl-CoA:phenyllactate CoA-transferase activity Catalysis of the reaction: (R)-3-phenyllactate + [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonatooxy)oxolan-2-yl]methyl {[(3R)-3-hydroxy-2,2-dimethyl-3-({2-[(2-{[(2E)-3-phenylprop-2-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)propyl phosphonato]oxy}phosphonate = (R)-3-phenyllactoyl-CoA + trans-cinnamate. tmpzr1t_l9r_go_relaxed.owl FldA|(E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase activity MetaCyc:2.8.3.17-RXN|KEGG_REACTION:R07796|RHEA:15601|EC:2.8.3.17 molecular_function owl:Class GO:0060243 biolink:NamedThing negative regulation of cell growth involved in contact inhibition The negative regulation of cell growth in response to increased cell density. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0006191 biolink:NamedThing deoxyinosine salvage Any process that generates deoxyinosine from derivatives of it, without de novo synthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005458 biolink:NamedThing GDP-mannose transmembrane transporter activity Enables the transfer of a GDP-mannose from one side of a membrane to the other. GDP-mannose is a substance composed of mannose in glycosidic linkage with guanosine diphosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0051373 biolink:NamedThing FATZ binding Binding to a member of the FATZ family of proteins, filamin-, actinin-, and telethonin-binding proteins of the Z-disc of striated muscle. FATZ proteins are located in the Z-disc of the sarcomere and are involved in a complex network of interactions with other Z-band components. tmpzr1t_l9r_go_relaxed.owl filamin-, actinin- and telethonin-binding protein of the Z-disc of striated muscle|FATZ 1 binding|calsarcin binding|FATZ 2 binding|FATZ 3 binding|calsarcin 3 binding|calsarcin 1 binding|calsarcin 2 binding GO:0051376|GO:0051375|GO:0051374 molecular_function owl:Class GO:1990932 biolink:NamedThing 5.8S rRNA binding Binding to 5.8S ribosomal RNA, a eukaryotic ribosomal RNA which forms a complex with 28S RNA. tmpzr1t_l9r_go_relaxed.owl sl 2016-03-14T20:25:41Z molecular_function owl:Class GO:0042745 biolink:NamedThing circadian sleep/wake cycle The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042252 biolink:NamedThing establishment of planar polarity of larval imaginal disc epithelium Coordinated organization of groups of cells in the plane of a larval imaginal disc epithelium, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021767 biolink:NamedThing mammillary body development The progression of the mammillary body over time from its initial formation until its mature state. The mammillary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004847 biolink:NamedThing urea carboxylase activity Catalysis of the reaction: ATP + bicarbonate + urea = ADP + 2 H(+) + phosphate + urea-1-carboxylate. tmpzr1t_l9r_go_relaxed.owl UCA activity|urea carboxylase (hydrolyzing) activity|urease (ATP-hydrolysing)|urea:carbon-dioxide ligase (ADP-forming)|urease (ATP-hydrolyzing) activity|ATP--urea amidolyase activity|urea amidolyase activity|UALase activity|urea carboxylase (hydrolysing) KEGG_REACTION:R00774|EC:6.3.4.6|RHEA:20896|MetaCyc:UREA-CARBOXYLASE-RXN molecular_function owl:Class GO:0042293 biolink:NamedThing Hub1 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier Hub1, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090402 biolink:NamedThing oncogene-induced cell senescence A cellular senescence process associated with the dismantling of a cell as a response to oncogenic stress, such as the activation of the Ras oncogenic family. tmpzr1t_l9r_go_relaxed.owl OIS tb 2011-01-05T02:37:57Z biological_process owl:Class GO:0140645 biolink:NamedThing neutrophic extracellular trap formation The aggregation, arrangement and bonding together of a set of components to form a neutrophil extracellular trap, a network of extracellular fibers primarily composed of DNA from neutrophils, which bind and neutralizes pathogens. tmpzr1t_l9r_go_relaxed.owl NET formation https://github.com/geneontology/go-ontology/issues/21416 http://purl.obolibrary.org/obo/TXPO_0002149 pg 2021-05-12T07:08:07Z biological_process owl:Class GO:0047879 biolink:NamedThing erythronolide synthase activity Catalysis of the reaction: 6 malonyl-CoA + propionyl-CoA = 7 CoA + 6-deoxyerythronolide B. tmpzr1t_l9r_go_relaxed.owl erythronolide condensing enzyme activity|malonyl-CoA:propionyl-CoA malonyltransferase (cyclizing) MetaCyc:ERYTHRONOLIDE-SYNTHASE-RXN|EC:2.3.1.94|RHEA:23068 molecular_function owl:Class GO:0080095 biolink:NamedThing phosphatidylethanolamine-sterol O-acyltransferase activity Catalysis of the reaction: a phosphatidylethanolamine + a sterol = a sterol ester + a lysophosphatidylethanolamine. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T03:39:33Z molecular_function owl:Class GO:0002489 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway, TAP-dependent|TAP-dependent antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway|TAP-dependent endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway biological_process owl:Class GO:0000287 biolink:NamedThing magnesium ion binding Binding to a magnesium (Mg) ion. tmpzr1t_l9r_go_relaxed.owl Mg binding|magnesium binding molecular_function owl:Class GO:0045330 biolink:NamedThing aspartyl esterase activity Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090545 biolink:NamedThing CHD-type complex A SWI/SNF-type complex that contains a subunit from the CHD(Chromodomain helicase DNA-binding) family. The CHD family is characterized by two signature sequence motifs: tandem chromodomains located in the N-terminal region, and the SNF2-like ATPase domain located in the central region of the protein structure. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-15T12:11:57Z cellular_component owl:Class GO:0005616 biolink:NamedThing larval serum protein complex A multisubunit protein complex which, in Drosophila, is a heterohexamer of three subunits, alpha, beta and gamma. The complex is thought to store amino acids for synthesis of adult proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0055042 biolink:NamedThing 5-valerolactone hydrolase activity Catalysis of the reaction: 5-valerolactone + H2O = 5-hydroxyvalerate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004744 biolink:NamedThing retinal isomerase activity Catalysis of the reaction: all-trans-retinal = 11-cis-retinal. tmpzr1t_l9r_go_relaxed.owl all-trans-retinal 11-cis-trans-isomerase activity|retinoid isomerase activity|retinene isomerase activity MetaCyc:RETINAL-ISOMERASE-RXN|KEGG_REACTION:R02126|RHEA:24124 molecular_function owl:Class GO:0001863 biolink:NamedThing collectin receptor activity Combining with a collectin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl Note that collectins include such proteins as mannose-binding lectin (MBL) and surfactant proteins A and D (SP-A and SP-D). molecular_function owl:Class GO:0019123 biolink:NamedThing peptidyl-methionine racemization The racemization of peptidyl-methionine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0193 GO:0018087|GO:0018369 biological_process owl:Class GO:0052844 biolink:NamedThing inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity Catalysis of the reaction: inositol 3-diphosphate 1,2,4,5,6-pentakisphosphate + H2O = inositol 1,2,3,4,5,6-hexakisphosphate + phosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10978 ai 2011-12-05T10:59:26Z molecular_function owl:Class GO:0034074 biolink:NamedThing marneral synthase activity Catalysis of the reaction: oxidosqualene = marneral. tmpzr1t_l9r_go_relaxed.owl RHEA:31875|MetaCyc:RXN-9664 molecular_function owl:Class GO:0031881 biolink:NamedThing type 4 somatostatin receptor binding Binding to a type 4 somatostatin receptor. tmpzr1t_l9r_go_relaxed.owl type 4 somatostatin receptor ligand molecular_function owl:Class GO:0071377 biolink:NamedThing cellular response to glucagon stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T03:25:07Z biological_process owl:Class GO:0047722 biolink:NamedThing indolelactate dehydrogenase (NADH) activity Catalysis of the reaction: 3-(indol-3-yl)lactate + NAD(+) = 3-(indol-3-yl)pyruvate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl indolelactate:NAD+ oxidoreductase activity|(indol-3-yl)lactate:NAD+ oxidoreductase activity|indole-3-lactate dehydrogenase activity KEGG_REACTION:R01971|EC:1.1.1.110|MetaCyc:INDOLELACTATE-DEHYDROGENASE-RXN|RHEA:20133 molecular_function owl:Class GO:0032477 biolink:NamedThing homodimeric decaprenyl diphosphate synthase complex A homodimeric complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0051992 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + di-trans,poly-cis-undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PHOSNACMURPENTATRANS-RXN|RHEA:28386|EC:2.7.8.13 Note that EC classifies 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity ; GO:0051992' and 'phospho-N-acetylmuramoyl-pentapeptide-transferase activity ; GO:0008963' under the same EC number, EC:2.7.8.13. ai 2010-07-06T12:10:01Z molecular_function owl:Class GO:0102420 biolink:NamedThing sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity Catalysis of the reaction: hexadecanedioyl-CoA + sn-glycerol 3-phosphate = coenzyme A + 1-C16:0-alpha,omega-dicarboxyl-2-lysophosphatidate. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.15|MetaCyc:RXN-13805 molecular_function owl:Class GO:0102802 biolink:NamedThing thebaine 6-O-demethylase activity Catalysis of the reaction: thebaine + 2-oxoglutarate + O2 <=> neopinone + formaldehyde + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8147|RHEA:27477|EC:1.14.11.31 molecular_function owl:Class GO:0061971 biolink:NamedThing replacement bone morphogenesis The process in which bones are generated and organized as a result of the conversion of another structural tissue into bone. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T18:10:59Z biological_process owl:Class GO:1905200 biolink:NamedThing gibberellic acid transmembrane transport The directed movement of gibberellic acid across a membrane. tmpzr1t_l9r_go_relaxed.owl lr 2016-05-12T18:20:04Z biological_process owl:Class GO:0034710 biolink:NamedThing inhibin complex binding Binding to an inhibin complex, a dimer of one inhibin-alpha subunit and one inhibin-beta subunit. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050964 biolink:NamedThing detection of electrical stimulus involved in electroception The series of events that contribute to electroception in which an electrical stimulus is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl sensory transduction of electrical stimulus during electroception|electroception, sensory detection of electrical stimulus|sensory detection of electrical stimulus during electroception|electroception, sensory transduction|detection of electrical stimulus during electroreception|electroception, detection of electrical stimulus|electroception, sensory transduction of electrical stimulus biological_process owl:Class GO:0120153 biolink:NamedThing calcium-dependent carbohydrate binding Binding to a carbohydrate in the presence of calcium. tmpzr1t_l9r_go_relaxed.owl krc 2018-04-27T16:42:21Z molecular_function owl:Class GO:0031731 biolink:NamedThing CCR6 chemokine receptor binding Binding to a CCR6 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl LARC receptor binding|CCR6 chemokine receptor ligand molecular_function owl:Class GO:0102693 biolink:NamedThing UDP-glucose:kinetin 7-N-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + kinetin <=> H+ + kinetin-7-N-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4731 molecular_function owl:Class GO:0070579 biolink:NamedThing methylcytosine dioxygenase activity Catalysis of the reaction: methylcytosine + 2-oxoglutarate + O2 = 5-hydroxymethylcytosine + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5220952|Reactome:R-HSA-5221014|Reactome:R-HSA-5220990 mah 2009-04-22T02:29:41Z molecular_function owl:Class GO:1904764 biolink:NamedThing chaperone-mediated autophagy translocation complex disassembly The disaggregation of a chaperone-mediated autophagy translocation complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl chaperone-mediated autophagy receptor complex disassembly|CMA receptor complex disassembly|CMA translocation complex disassembly pad 2015-10-26T16:34:36Z biological_process owl:Class GO:0046741 biolink:NamedThing transport of virus in host, tissue to tissue The transport of a virus between tissues in a multicellular organism. tmpzr1t_l9r_go_relaxed.owl viral spread within host, tissue to tissue|spread of virus in host, tissue to tissue|spread of virus within host, tissue to tissue|tissue to tissue spread of virus within host biological_process owl:Class GO:0102886 biolink:NamedThing alpha-chamigrene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> alpha-chamigrene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8428 molecular_function owl:Class GO:0080049 biolink:NamedThing L-gulono-1,4-lactone dehydrogenase activity Catalysis of the reaction: L-gulono-1,4-lactone + 2 ferricytochrome c = L-ascorbate + 2 ferrocytochrome c. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1439 molecular_function owl:Class GO:0036250 biolink:NamedThing peroxisome transport along microtubule The directed movement of a peroxisome along a microtubule, mediated by motor proteins. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-31T03:09:09Z biological_process owl:Class GO:0052870 biolink:NamedThing tocopherol omega-hydroxylase activity Catalysis of the reaction: tocopherol + O2 + NADPH + H+ = 13'-hydroxy-tocopherol + NADP+ + H2O . tmpzr1t_l9r_go_relaxed.owl tocopherol 13-hydroxylase activity ai 2012-01-30T03:06:27Z molecular_function owl:Class GO:0050956 biolink:NamedThing electroception The series of events required for an organism to receive an electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. Many fish possess an electroception sense; for example, the electric eel uses low voltage pulses of electricity for navigation and prey location. tmpzr1t_l9r_go_relaxed.owl electroception sense|electroceptive sense Wikipedia:Electroreception biological_process owl:Class GO:0002170 biolink:NamedThing high-affinity IgA receptor activity Combining with high affinity with an immunoglobulin of an IgA isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl high affinity IgA receptor activity hjd 2010-05-06T05:00:11Z molecular_function owl:Class GO:0061865 biolink:NamedThing polarized secretion of basement membrane proteins in epithelium The basement membrane constituent secretion in which there is a restriction or targeting of basement membrane proteins for controlled release on the basal side of polarized epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-07T18:26:02Z biological_process owl:Class GO:0034335 biolink:NamedThing DNA negative supercoiling activity Catalytic introduction of negative supercoils into a DNA molecule or region thereof. In bacteria, negative supercoils are only introduced by DNA gyrase, a type II topoisomerase, but not all DNA gyrases are capable of introducing supercoils. In bacteria, the level of supercoiling varies widely between species and has been characterized properly in only a handful of organisms. The best characterized enzyme, from E.coli, is exceptionally proficient at supercoiling and this ability is not representative of all bacteria. tmpzr1t_l9r_go_relaxed.owl DNA gyrase activity|DNA-gyrase activity Note that this term was reinstated from obsolete. molecular_function owl:Class GO:0102650 biolink:NamedThing cyclo-acetoacetyl-L-tryptophan synthetase activity Catalysis of the reaction: acetoacetyl-ACP + L-tryptophan + ATP <=> cyclo-acetoacetyl-L-tryptophan + AMP + diphosphoric acid + 2 H+ + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15811 molecular_function owl:Class GO:0072633 biolink:NamedThing interleukin-30 production The appearance of interleukin-30 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-30 secretion|IL-30 production|interleukin-30 complex production GO:0072634 biological_process owl:Class GO:0004561 biolink:NamedThing alpha-N-acetylglucosaminidase activity Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-glucosamine residues in N-acetyl-alpha-D-glucosaminides. tmpzr1t_l9r_go_relaxed.owl N-acetyl-alpha-glucosaminidase activity|alpha-acetylglucosaminidase activity|NAG activity|N-acetyl-alpha-D-glucosaminidase activity|alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase activity|alpha-D-2-acetamido-2-deoxyglucosidase activity Reactome:R-HSA-2090038|Reactome:R-HSA-9036052|MetaCyc:3.2.1.50-RXN|Reactome:R-HSA-1678742|EC:3.2.1.50|Reactome:R-HSA-2263496 molecular_function owl:Class GO:0061591 biolink:NamedThing calcium activated galactosylceramide scrambling The movement of a population of galactosylceramide molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-05T15:25:52Z biological_process owl:Class GO:0008446 biolink:NamedThing GDP-mannose 4,6-dehydratase activity Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O. tmpzr1t_l9r_go_relaxed.owl guanosine diphosphomannose oxidoreductase activity|GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming)|guanosine 5'-diphosphate-D-mannose oxidoreductase activity|GDPmannose 4,6-dehydratase activity|GDP-D-mannose 4,6-dehydratase activity|GDP-D-mannose dehydratase activity|Gmd|guanosine diphosphomannose 4,6-dehydratase activity|GDP-mannose 4,6-hydro-lyase activity MetaCyc:GDPMANDEHYDRA-RXN|Reactome:R-HSA-6787632|EC:4.2.1.47|KEGG_REACTION:R00888|RHEA:23820 molecular_function owl:Class GO:0009271 biolink:NamedThing phage shock A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010499 biolink:NamedThing proteasomal ubiquitin-independent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome but do not involve ubiquitin. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0046562 biolink:NamedThing glucose oxidase activity Catalysis of the reaction: beta-D-glucose + O2 = D-glucono-1,5-lactone + H2O2. tmpzr1t_l9r_go_relaxed.owl microcid|penatin|deoxin-1|glucose oxyhydrase activity|beta-D-glucose:oxygen 1-oxido-reductase activity|D-glucose oxidase activity|D-glucose-1-oxidase activity|beta-D-glucose oxidase activity|beta-D-glucose:quinone oxidoreductase activity|corylophyline|beta-D-glucose:oxygen 1-oxidoreductase activity|glucose aerodehydrogenase activity|GOD activity RHEA:11428|EC:1.1.3.4|KEGG_REACTION:R01522|MetaCyc:GLUCOSE-OXIDASE-RXN molecular_function owl:Class GO:0018686 biolink:NamedThing 6-hydroxy pseudo-oxynicotine monooxygenase activity Catalysis of the reaction: 2 6-hydroxypseudooxynicotine + O2 = 2 2,6-dihydroxypseudooxynicotine. tmpzr1t_l9r_go_relaxed.owl EC:1.14.18.-|UM-BBD_reactionID:r0480 molecular_function owl:Class GO:0071198 biolink:NamedThing Kv4.1-DPP6 channel complex A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.1. tmpzr1t_l9r_go_relaxed.owl Kv4.1-DPPX channel complex CORUM:600 mah 2009-11-23T05:14:37Z cellular_component owl:Class GO:0031866 biolink:NamedThing EP3 subtype prostaglandin E2 receptor binding Binding to an EP3 subtype prostaglandin E2 receptor. tmpzr1t_l9r_go_relaxed.owl EP3 subtype prostaglandin E2 receptor ligand|prostanoid EP3 receptor binding molecular_function owl:Class GO:0007157 biolink:NamedThing heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell. tmpzr1t_l9r_go_relaxed.owl agglutination biological_process owl:Class GO:0018707 biolink:NamedThing 1-phenanthrol methyltransferase activity Catalysis of the reaction: 1-phenanthrol + X-CH3 = X + 1-methoxyphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0493 molecular_function owl:Class GO:0030756 biolink:NamedThing isoorientin 3'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + isoorientin = S-adenosyl-L-homocysteine + H(+) + isoscoparin. tmpzr1t_l9r_go_relaxed.owl isoorientin 3'-methyltransferase activity|S-adenosyl-L-methionine:isoorientin 3'-O-methyltransferase activity MetaCyc:ISOORIENTIN-3-O-METHYLTRANSFERASE-RXN|EC:2.1.1.78|KEGG_REACTION:R03731|RHEA:24096 molecular_function owl:Class GO:0009025 biolink:NamedThing tagatose-bisphosphate aldolase activity Catalysis of the reaction: D-tagatose 1,6-diphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl D-tagatose-1,6-bisphosphate D-glyceraldehyde 3-phosphate-lyase (glycerone-phosphate-forming)|tagatose-1,6-bisphosphate aldolase 1|tagatose 1,6-diphosphate aldolase activity|AgaZ|D-tagatose-1,6-bisphosphate triosephosphate lyase activity|AgaY|KbaY|D-tagatose-1,6-bisphosphate aldolase activity EC:4.1.2.40|KEGG_REACTION:R01069|RHEA:22948|MetaCyc:TAGAALDOL-RXN molecular_function owl:Class GO:0030476 biolink:NamedThing ascospore wall assembly The aggregation, arrangement and bonding together of a set of components to form an ascospore wall. During sporulation in Ascomycota, each ascospore nucleus becomes surrounded by a specialized spore wall, formed by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. An example of this process is found in Saccharomyces cerevisiae. tmpzr1t_l9r_go_relaxed.owl spore wall assembly GO:0007152 biological_process owl:Class GO:0043617 biolink:NamedThing cellular response to sucrose starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sucrose. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0009666 biolink:NamedThing plastid outer membrane organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the outer membrane of a plastid. tmpzr1t_l9r_go_relaxed.owl plastid outer membrane organization and biogenesis|plastid outer membrane organisation biological_process owl:Class GO:0000032 biolink:NamedThing cell wall mannoprotein biosynthetic process The chemical reactions and pathways resulting in the formation of cell wall mannoproteins, any cell wall protein that contains covalently bound mannose residues. tmpzr1t_l9r_go_relaxed.owl cell wall mannoprotein formation|cell wall mannoprotein anabolism|cell wall mannoprotein synthesis|cell wall mannoprotein biosynthesis biological_process owl:Class GO:0050174 biolink:NamedThing phenylalanine decarboxylase activity Catalysis of the reaction: L-phenylalanine = phenylethylamine + CO2. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine decarboxylase activity|aromatic L-amino acid decarboxylase activity|L-phenylalanine carboxy-lyase (phenylethylamine-forming)|L-phenylalanine carboxy-lyase activity EC:4.1.1.53|MetaCyc:PHENYLALANINE-DECARBOXYLASE-RXN|RHEA:19717 molecular_function owl:Class GO:0035478 biolink:NamedThing chylomicron binding Binding to a chylomicron, a large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-23T10:18:52Z molecular_function owl:Class GO:0022859 biolink:NamedThing dephosphorylation-gated channel activity Enables the transmembrane transfer of a solute by a channel that opens in response to dephosphorylation of one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050614 biolink:NamedThing delta24-sterol reductase activity Catalysis of the reaction: NADP+ + 5-alpha-cholest-7-en-3-beta-ol = NADPH + H+ + 5-alpha-cholesta-7,24-dien-3-beta-ol. tmpzr1t_l9r_go_relaxed.owl D24-sterol reductase activity|lanosterol delta24-reductase activity|sterol:NADP+ delta24-oxidoreductase activity|lanosterol Delta(24)-reductase activity Reactome:R-HSA-196417|MetaCyc:1.3.1.72-RXN|RHEA:13685|Reactome:R-HSA-6807064|EC:1.3.1.72 molecular_function owl:Class GO:0036141 biolink:NamedThing L-phenylalanine-oxaloacetate transaminase activity Catalysis of the reaction L-phenylalanine + oxaloacetate = phenylpyruvate + aspartate. tmpzr1t_l9r_go_relaxed.owl L-phenylalanine:oxaloacetate transaminase activity bf 2012-03-08T10:35:44Z molecular_function owl:Class GO:0030372 biolink:NamedThing high molecular weight B cell growth factor receptor binding Binding to a high molecular weight B cell growth factor receptor. tmpzr1t_l9r_go_relaxed.owl high molecular weight B cell growth factor receptor ligand|high molecular weight B-lymphocyte growth factor receptor binding|high molecular weight B-cell growth factor receptor binding|high molecular weight B lymphocyte growth factor receptor binding molecular_function owl:Class GO:0050219 biolink:NamedThing prostaglandin-A1 delta-isomerase activity Catalysis of the reaction: prostaglandin A1 = prostaglandin C1. tmpzr1t_l9r_go_relaxed.owl (13E)-(15S)-15-hydroxy-9-oxoprosta-10,13-dienoate delta10-delta11-isomerase activity|prostaglandin-A1 D-isomerase activity|prostaglandin A isomerase activity KEGG_REACTION:R04565|MetaCyc:PROSTAGLANDIN-A1-DELTA-ISOMERASE-RXN|RHEA:10460|EC:5.3.3.9 molecular_function owl:Class GO:0034302 biolink:NamedThing akinete formation The process in which an akinete, a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell, is formed. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031957 biolink:NamedThing very long-chain fatty acid-CoA ligase activity Catalysis of the reaction: ATP + a very-long-chain fatty acid + CoA = AMP + diphosphate + an acyl-CoA; a very long-chain fatty acid is a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very-long-chain fatty acid-CoA ligase activity|very-long-chain-fatty-acid-CoA ligase activity|very-long-chain fatty acid activation Reactome:R-HSA-5695957|Reactome:R-HSA-5696007|Reactome:R-HSA-8875077 molecular_function owl:Class GO:0050627 biolink:NamedThing mycothione reductase activity Catalysis of the reaction: NAD(P)+ + mycothiol = NAD(P)H + H+ + mycothione. tmpzr1t_l9r_go_relaxed.owl mycothiol:NAD(P)+ oxidoreductase activity|mycothiol-disulfide reductase activity MetaCyc:1.8.1.15-RXN|EC:1.8.1.15 molecular_function owl:Class GO:0097030 biolink:NamedThing CENP-A containing nucleosome binding Binding to a centromere-specific nucleosome, a form of nucleosome located only at the centromere, in which the histone H3 is replaced by the variant form CENP-A (sometimes known as CenH3). tmpzr1t_l9r_go_relaxed.owl centromeric nucleosome binding|centromere-specific nucleosome binding pr 2011-04-01T03:19:35Z molecular_function owl:Class GO:0036218 biolink:NamedThing dTTP diphosphatase activity Catalysis of the reaction: dTTP + H2O = dTMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28534|EC:3.6.1.9|MetaCyc:RXN0-5107 bf 2012-05-08T01:47:59Z molecular_function owl:Class GO:0102236 biolink:NamedThing trans-4-hexen-3-one reductase activity Catalysis of the reaction: trans-4-hexen-3-one + NADPH + H+ <=> hexan-3-one + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12296 molecular_function owl:Class GO:0061831 biolink:NamedThing apical ectoplasmic specialization Testis-specific junction between mature spermatids and Sertoli cells at the luminal end of the Sertoli cell. tmpzr1t_l9r_go_relaxed.owl apical ES cellular_component owl:Class GO:1901358 biolink:NamedThing beta-D-galactofuranose biosynthetic process The chemical reactions and pathways resulting in the formation of beta-D-galactofuranose. tmpzr1t_l9r_go_relaxed.owl beta-D-galactofuranose biosynthesis|beta-D-galactofuranose synthesis|beta-D-galactofuranose anabolism|beta-D-galactofuranose formation di 2012-09-13T22:19:47Z biological_process owl:Class GO:0004100 biolink:NamedThing chitin synthase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + [->4)-N-acetyl-beta-D-glucosaminyl-(1-](n) = UDP + [->4)-N-acetyl-beta-D-glucosaminyl-(1-](n+1). tmpzr1t_l9r_go_relaxed.owl chitin-uridine diphosphate acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyl-transferase activity|chitin synthetase activity|chitin-UDP acetyl-glucosaminyl transferase activity|trans-N-acetylglucosaminosylase activity|chitin-UDP N-acetylglucosaminyltransferase activity RHEA:16637|MetaCyc:CHITIN-SYNTHASE-RXN|EC:2.4.1.16 molecular_function owl:Class GO:0019440 biolink:NamedThing tryptophan catabolic process to indole-3-acetate The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including indole-3-acetate. tmpzr1t_l9r_go_relaxed.owl tryptophan catabolic process to IAA|tryptophan degradation to indole-3-acetate|tryptophan catabolic process to indoleacetic acid|tryptophan catabolism to indoleacetic acid|tryptophan breakdown to indole-3-acetate MetaCyc:TRPIAACAT-PWY biological_process owl:Class GO:0102993 biolink:NamedThing linolenate delta15 desaturase activity Catalysis of the reaction: O2 + a lipid linoleoyl group + a reduced electron acceptor <=> 2 H2O + a lipid alpha-linolenoyl group + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9667|RHEA:46408 molecular_function owl:Class GO:0061484 biolink:NamedThing hematopoietic stem cell homeostasis Any biological process involved in the maintenance of the steady-state number of hematopoietic stem cells within a population of cells. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-04T09:41:02Z biological_process owl:Class GO:0047476 biolink:NamedThing 3-alpha,7-alpha-dihydroxy-5-beta-cholestanate-CoA ligase activity Catalysis of the reaction: CoA + 3-alpha,7-alpha-dihydroxy-5-beta-cholestanate + ATP = 3-alpha,7-alpha-dihydroxy-5-beta-cholestanoyl-CoA + diphosphate + AMP. tmpzr1t_l9r_go_relaxed.owl 3alpha,7alpha-dihydroxy-5beta-cholestanate-CoA ligase activity|3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)|3alpha,7alpha-dihydroxy-5beta-cholestanoyl coenzyme A synthetase activity|DHCA-CoA ligase activity EC:6.2.1.28|MetaCyc:6.2.1.28-RXN|RHEA:21776 molecular_function owl:Class GO:0102387 biolink:NamedThing 2-phenylethanol acetyltransferase activity Catalysis of the reaction: 2-phenylethanol + acetyl-CoA = phenethyl acetate + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13542|EC:2.3.1.224 molecular_function owl:Class GO:0061967 biolink:NamedThing establishment of left sidedness The initial formation of the type asymmetry in an organism's body plan or part of an organism that established the pattern characteristic to its left side. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T16:32:41Z biological_process owl:Class GO:0002153 biolink:NamedThing steroid receptor RNA activator RNA binding Binding to a steroid receptor RNA activator RNA (SRA). SRA enhances steroid hormone receptor transcriptional activity as an RNA transcript by an indirect mechanism that does not involve SRA-steroid receptor binding. tmpzr1t_l9r_go_relaxed.owl SRA binding Note: there is also evidence that the RNA itself may code a protein (solution structure of mouse steroid receptor RNA activator 1 (SRA1) protein submitted to PDB by Riken). hjd 2009-11-16T02:18:55Z molecular_function owl:Class GO:0070847 biolink:NamedThing core mediator complex A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. tmpzr1t_l9r_go_relaxed.owl C mediator complex|S mediator complex https://github.com/geneontology/go-ontology/issues/15979 mah 2009-08-04T02:56:11Z cellular_component owl:Class GO:0016490 biolink:NamedThing structural constituent of peritrophic membrane The action of a molecule that contributes to the structural integrity of the peritrophic membrane, a tubular sheath of cuticle that shields the epithelial cells of the midgut from the gut contents. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl structural constituent of peritrophic matrix molecular_function owl:Class GO:0062070 biolink:NamedThing SAGA complex binding Binding to a SAGA complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:13:36Z molecular_function owl:Class GO:0051979 biolink:NamedThing alginic acid acetylation The addition of O-acetyl ester groups to alginic acid, a linear polymer of D-mannuronate and L-guluronate. tmpzr1t_l9r_go_relaxed.owl alginate acetylation biological_process owl:Class GO:0102441 biolink:NamedThing syringetin 7-O-methyltransferase activity Catalysis of the reaction: syringetin(1-) + S-adenosyl-L-methionine <=> 7,3',5'-trimethylmyricetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13919 molecular_function owl:Class GO:0032949 biolink:NamedThing regulation of alpha-glucan biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways relusting in the formation of alpha-glucans. tmpzr1t_l9r_go_relaxed.owl regulation of alpha-glucan anabolism|regulation of alpha-glucan synthesis|regulation of alpha-glucan biosynthesis|regulation of alpha-glucan formation biological_process owl:Class GO:0004745 biolink:NamedThing NAD-retinol dehydrogenase activity Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+. tmpzr1t_l9r_go_relaxed.owl retinene reductase activity|retinol (vitamin A1) dehydrogenase activity|retinal reductase activity|all-trans retinol dehydrogenase activity|retinol dehydrogenase activity https://github.com/geneontology/go-ontology/issues/20980 Reactome:R-HSA-2466832|Reactome:R-HSA-5362564|MetaCyc:RETINOL-DEHYDROGENASE-RXN|RHEA:21284|Reactome:R-HSA-5362721|Reactome:R-HSA-5362518|Reactome:R-HSA-2454081|EC:1.1.1.105 molecular_function owl:Class GO:0031039 biolink:NamedThing macronucleus A membrane-bounded organelle of ciliated protozoan cells that contains polyploid copies of a portion of the cell's complete genome. Transcription of genes occurs in macronuclei. Some ciliate species may contain multiple macronuclei per cell. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Macronucleus cellular_component owl:Class GO:0033428 biolink:NamedThing CAG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CAG codon. tmpzr1t_l9r_go_relaxed.owl glutamine tRNA Note that in the standard genetic code, CAG codes for glutamine. molecular_function owl:Class GO:0051669 biolink:NamedThing fructan beta-fructosidase activity Catalysis of the hydrolysis of terminal, non-reducing 2,1- and 2,6-linked beta-D-fructofuranose residues in fructans. tmpzr1t_l9r_go_relaxed.owl fructan b-fructosidase activity|polysaccharide beta-fructofuranosidase activity|fructan exohydrolase activity|exo-beta-fructosidase activity|exo-beta-D-fructosidase activity|fructanase activity|beta-D-fructan fructohydrolase activity EC:3.2.1.80|MetaCyc:3.2.1.80-RXN molecular_function owl:Class GO:0071111 biolink:NamedThing cyclic-guanylate-specific phosphodiesterase activity Catalysis of the reaction: cyclic di-3',5'-guanylate + H(2)O = 5'-phosphoguanylyl(3'->5')guanosine + H(+). tmpzr1t_l9r_go_relaxed.owl c-di-GMP phosphodiesterase activity|VieA|phosphodiesterase A1 activity|c-di-GMP-specific phosphodiesterase activity|cyclic bis(3->5')diguanylate phosphodiesterase activity|PDEA1 MetaCyc:RXN0-4181|KEGG_REACTION:R08991|EC:3.1.4.52|RHEA:24902 mah 2009-11-13T02:10:39Z molecular_function owl:Class GO:0019086 biolink:NamedThing late viral transcription The transcription of the final group of viral genes of the viral life cycle, following middle transcription, or where middle transcription doesn't occur, following early transcription. Involves the transcription of genes encoding structural proteins. tmpzr1t_l9r_go_relaxed.owl late viral mRNA transcription biological_process owl:Class GO:0002944 biolink:NamedThing cyclin K-CDK12 complex A protein complex consisting of cyclin Kand cyclin-dependent kinase 12 (CDK12). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl CycK/Cdk12 complex hjd 2012-12-05T16:09:48Z cellular_component owl:Class GO:0043778 biolink:NamedThing cobalt-precorrin-8 methylmutase activity Catalysis of the reaction: cobalt-precorrin 8 = cobyrinate. tmpzr1t_l9r_go_relaxed.owl cobalt-precorrin 8X methylmutase activity|cobalt-precorrin-8X methylmutase activity|cobalt-precorrin 8 methylmutase activity MetaCyc:RXN-8768|EC:5.4.99.60|RHEA:16209 molecular_function owl:Class GO:0042004 biolink:NamedThing feminization of hermaphrodite soma Promotion of female sex and sexual phenotypes in the hermaphroditic soma. An example of this is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990468 biolink:NamedThing NuA3b histone acetyltransferase complex A NuA3 complex that catalyzes the acetylation of Histone H3. In S. cerevisiae, this complex consists of Eaf6p, Nto1p, Sas3p, Taf14p, Pdp3 and associates with H3K4me3 via Pdp3p. tmpzr1t_l9r_go_relaxed.owl rb 2014-08-25T23:13:37Z cellular_component owl:Class GO:0045348 biolink:NamedThing positive regulation of MHC class II biosynthetic process Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II. tmpzr1t_l9r_go_relaxed.owl up regulation of MHC class II biosynthetic process|positive regulation of MHC class II synthesis|positive regulation of MHC class II biosynthesis|positive regulation of major histocompatibility complex class II biosynthesis|stimulation of MHC class II biosynthetic process|activation of MHC class II biosynthetic process|positive regulation of major histocompatibility complex class II biosynthetic process|up-regulation of MHC class II biosynthetic process|positive regulation of MHC class II formation|positive regulation of MHC class II anabolism|upregulation of MHC class II biosynthetic process biological_process owl:Class GO:0090570 biolink:NamedThing RNA polymerase I transcription repressor complex A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase I promoter. tmpzr1t_l9r_go_relaxed.owl tb 2014-05-09T13:26:16Z cellular_component owl:Class GO:1990403 biolink:NamedThing embryonic brain development The process occurring during the embryonic phase whose specific outcome is the progression of the brain over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl sl 2014-06-23T20:57:13Z biological_process owl:Class GO:0004364 biolink:NamedThing glutathione transferase activity Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. tmpzr1t_l9r_go_relaxed.owl glutathione S-transferase activity|glutathione S-aryltransferase activity|RX:glutathione R-transferase activity|glutathione S-aralkyltransferase activity|glutathione S-alkyltransferase activity|S-(hydroxyalkyl)glutathione lyase activity|glutathione S-alkyl transferase activity|glutathione conjugation reaction Reactome:R-HSA-9026780|Reactome:R-HSA-9026911|Reactome:R-HSA-176059|EC:2.5.1.18|Reactome:R-HSA-3301943|Reactome:R-HSA-9026901|Reactome:R-HSA-5423653|MetaCyc:GSHTRAN-RXN|Reactome:R-HSA-9026777|Reactome:R-HSA-176054 molecular_function owl:Class GO:0050649 biolink:NamedThing testosterone 6-beta-hydroxylase activity Catalysis of the reaction: testosterone + donor-H2 + O2 = 6-beta-hydroxytestosterone + H2O. tmpzr1t_l9r_go_relaxed.owl testosterone 6b-hydroxylase activity molecular_function owl:Class GO:0043014 biolink:NamedThing alpha-tubulin binding Binding to the microtubule constituent protein alpha-tubulin. tmpzr1t_l9r_go_relaxed.owl alpha tubulin binding molecular_function owl:Class GO:0010428 biolink:NamedThing methyl-CpNpG binding Binding to a methylated cytosine/unspecified/guanine trinucleotide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0031710 biolink:NamedThing neuromedin B receptor binding Binding to a neuromedin B receptor. tmpzr1t_l9r_go_relaxed.owl neuromedin B receptor ligand molecular_function owl:Class GO:0010378 biolink:NamedThing temperature compensation of the circadian clock The process in which the circadian clock maintains robust and accurate timing over a broad range of physiological temperatures. The circadian clock is an endogenous 24-h timer found in most eukaryotes and in photosynthetic bacteria. The clock drives rhythms in the physiology, biochemistry, and metabolism of the organisms. tmpzr1t_l9r_go_relaxed.owl regulation of the circadian clock by temperature biological_process owl:Class GO:1900872 biolink:NamedThing pentadec-1-ene metabolic process The chemical reactions and pathways involving pentadec-1-ene. tmpzr1t_l9r_go_relaxed.owl pentadec-1-ene metabolism tt 2012-06-13T01:45:22Z biological_process owl:Class GO:0018697 biolink:NamedThing carbonyl sulfide nitrogenase activity Catalysis of the reaction: carbonyl sulfide + 2 H+ + 2 e- = hydrogen sulfide + carbon monoxide. tmpzr1t_l9r_go_relaxed.owl carbonyl sulphide nitrogenase activity EC:1.18.6.1|UM-BBD_reactionID:r0600 molecular_function owl:Class GO:0047998 biolink:NamedThing hyoscyamine (6S)-dioxygenase activity Catalysis of the reaction: 2-oxoglutarate + L-hyoscyamine + O(2) = (6S)-6-hydroxyhyoscyamine + CO(2) + succinate. tmpzr1t_l9r_go_relaxed.owl L-hyoscyamine,2-oxoglutarate:oxygen oxidoreductase ((6S)-hydroxylating)|hyoscyamine (6S)-hydroxylase activity|hyoscyamine 6beta-dioxygenase activity|hyoscyamine 6beta-hydroxylase activity|hyoscyamine 6-hydroxylase activity|hyoscyamine 6-beta-hydroxylase activity RHEA:12629|MetaCyc:HYOSCYAMINE-6-DIOXYGENASE-RXN|EC:1.14.11.11|KEGG_REACTION:R03812 molecular_function owl:Class GO:0044485 biolink:NamedThing envenomation resulting in fibrinogenolysis in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with fibrinogenolysis, a process that degrades fibrinogen at a variety of Arg-Lys bonds, thus impairing fibrinogen clotting in the bloodstream of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-26T03:41:01Z biological_process owl:Class GO:0044536 biolink:NamedThing envenomation resulting in depletion of circulating fibrinogen in other organism The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with a reduction in the quantity of fibrinogen found in the bloodstream of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in negative regulation of circulating fibrinogen in other organism jl 2012-03-21T02:56:49Z biological_process owl:Class GO:0015655 biolink:NamedThing alanine:sodium symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alanine(out) + Na+(out) = alanine(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium:alanine symporter activity RHEA:29283 jl 2012-08-08T12:57:30Z GO:0044670 molecular_function owl:Class GO:1990357 biolink:NamedThing terminal web An actin-rich cytoskeletal network located beneath the microvilli of the apical plasma membrane of polarized epithelial cells. In addition to actin filaments, the terminal web may contain actin-binding proteins, myosin motor proteins, and intermediate filaments. The terminal web can function as a contractile structure that influences the spatial distribution of microvilli as well as the development and morphogenesis of tissues containing polarized epithelial cells. tmpzr1t_l9r_go_relaxed.owl pr 2014-04-03T14:29:59Z cellular_component owl:Class GO:0051508 biolink:NamedThing stigmasterol UDP-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + stigmasterol = UDP + O-glucosyl-stigmasterol. tmpzr1t_l9r_go_relaxed.owl RHEA:61828|MetaCyc:RXN-12126 molecular_function owl:Class GO:0033678 biolink:NamedThing 5'-3' DNA/RNA helicase activity Unwinding of a DNA/RNA duplex in the 5' to 3' direction, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl 5' to 3' DNA/RNA helicase activity|ATP-dependent 5' to 3' DNA/RNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity https://github.com/geneontology/go-ontology/issues/21612 Reactome:R-HSA-163120 GO:0033682 molecular_function owl:Class GO:0060449 biolink:NamedThing bud elongation involved in lung branching The process in which a bud in the lung grows out from the point where it is formed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990502 biolink:NamedThing dense core granule maturation Steps required to transform a dense core granule generated at the trans-Golgi network into a fully formed and transmissible dense core granule. Dense core granule maturation proceeds through clathrin-mediated membrane remodeling events and is essential for efficient processing of cargo within dense core granules as well as for removing factors that might otherwise interfere with dense core granule trafficking and exocytosis. tmpzr1t_l9r_go_relaxed.owl dense core vesicle maturation kmv 2014-09-30T20:35:11Z biological_process owl:Class GO:0047643 biolink:NamedThing alginate synthase activity Catalysis of the reaction: GDP-D-mannuronate + alginate(n) = GDP + alginate(n+1). tmpzr1t_l9r_go_relaxed.owl GDP-D-mannuronate:alginate D-mannuronyltransferase activity|mannuronosyl transferase activity MetaCyc:ALGINATE-SYNTHASE-RXN|RHEA:46876|EC:2.4.1.33 molecular_function owl:Class GO:0043866 biolink:NamedThing adenylyl-sulfate reductase (thioredoxin) activity Catalysis of the reaction: AMP + sulfite + thioredoxin disulfide = 5'-adenylyl sulfate + thioredoxin. tmpzr1t_l9r_go_relaxed.owl thioredoxin-dependent 5'-adenylylsulfate reductase activity|AMP, sulfite:thioredoxin-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming)|AMP,sulfite:thioredoxin-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming) RHEA:21976|EC:1.8.4.10 molecular_function owl:Class GO:0051214 biolink:NamedThing RNAi-mediated antiviral immunity against RNA virus Gene silencing induced by RNA viruses leading to a sequence-specific degradation of target mRNAs or post-transcriptional gene silencing. In plants, DCL4 is the primary Dicer to detect RNA viruses. tmpzr1t_l9r_go_relaxed.owl RNA virus induced gene silencing|RNA virus-induced gene silencing|RNA VIGS https://github.com/geneontology/go-ontology/issues/19958 biological_process owl:Class GO:0036205 biolink:NamedThing histone catabolic process The chemical reactions and pathways resulting in the breakdown of a histone protein by individual cells. tmpzr1t_l9r_go_relaxed.owl histone protein catabolic process This term was created even though it describes a process relating to a group of gene products, because histones are highly conserved proteins that are essential components of cellular chromatin in eukaryotic cells. bf 2012-04-24T04:48:48Z biological_process owl:Class GO:0043826 biolink:NamedThing sulfur oxygenase reductase activity Catalysis of the reaction: 5 sulfur + oxygen + 4 H2O = sulfite + thiosulfate + 2 hydrogen sulfide + 9 H+. tmpzr1t_l9r_go_relaxed.owl sulphur oxygenase reductase activity|SOR MetaCyc:RXN-8226 molecular_function owl:Class GO:0036134 biolink:NamedThing 12-hydroxyheptadecatrienoic acid synthase activity Catalysis of the reaction: prostaglandin H2 = 12-hydroxyheptadecatrienoic acid (HHT) + malonaldehyde (MDA). tmpzr1t_l9r_go_relaxed.owl prostaglandin H2 degradation activity RHEA:48644|Reactome:R-HSA-2161613 bf 2012-03-05T11:17:34Z molecular_function owl:Class GO:0030342 biolink:NamedThing 1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity Catalysis of the hydroxylation of C-24 of 1-alpha,25-hydroxycholecalciferol (25-hydroxyvitamin D3; calcitriol). tmpzr1t_l9r_go_relaxed.owl calcitriol 24-hydroxylase activity|1,25-(OH)2D3 24-hydroxylase activity Reactome:R-HSA-5602004|Reactome:R-HSA-211950|Reactome:R-HSA-209765 molecular_function owl:Class GO:0004569 biolink:NamedThing glycoprotein endo-alpha-1,2-mannosidase activity Catalysis of the hydrolysis of the terminal alpha-glucosyl-(1,3)-mannosyl unit from Glc-Man(9)-(GlcNAc)(2) oligosaccharide component of the glycoprotein produced in the Golgi membrane. tmpzr1t_l9r_go_relaxed.owl glycoprotein glucosylmannohydrolase activity|glucosyl mannosidase activity|glucosylmannosidase activity|endomannosidase activity|endo-alpha-mannosidase activity Reactome:R-HSA-964759|MetaCyc:3.2.1.130-RXN|EC:3.2.1.130|RHEA:54824 molecular_function owl:Class GO:0036048 biolink:NamedThing protein desuccinylation The removal of a succinyl group (CO-CH2-CH2-CO) from a residue in a peptide or protein. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T09:42:35Z biological_process owl:Class GO:0033656 biolink:NamedThing modification by symbiont of host chloroplast The process in which an organism effects a change in the structure or function of host cell chloroplasts. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047439 biolink:NamedThing 3-deoxy-D-manno-octulosonate aldolase activity Catalysis of the reaction: 3-deoxy-D-manno-octulosonate = D-arabinose + pyruvate. tmpzr1t_l9r_go_relaxed.owl KDOaldolase activity|2-keto-3-deoxyoctonate aldolase activity|3-deoxy-D-manno-octulosonate D-arabinose-lyase activity|3-deoxy-D-manno-octulosonic aldolase activity|3-deoxy-D-manno-octulosonate D-arabinose-lyase (pyruvate-forming)|2-keto-3-deoxyoctonic aldolase activity|3-deoxyoctulosonic aldolase activity EC:4.1.2.23|MetaCyc:4.1.2.23-RXN|KEGG_REACTION:R01576|RHEA:23340 molecular_function owl:Class GO:0033852 biolink:NamedThing thyroid-hormone transaminase activity Catalysis of the reaction: 2-oxoglutarate + 3,5,3'-triiodo-L-thyronine = 3,5,3'-triiodothyropyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl thyroid-hormone aminotransferase activity|3,5-dinitrotyrosine aminotransferase activity|thyroid hormone aminotransferase activity|3,5-dinitrotyrosine transaminase activity|L-3,5,3'-triiodothyronine:2-oxoglutarate aminotransferase activity RHEA:19133|MetaCyc:THYROID-HORMONE-AMINOTRANSFERASE-RXN|KEGG_REACTION:R03952|EC:2.6.1.26 molecular_function owl:Class GO:0022875 biolink:NamedThing protein-N(PI)-phosphohistidine-galactitol phosphotransferase system transmembrane transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + galactitol(out) = protein histidine + galactitol phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl galactitol PTS transporter activity molecular_function owl:Class GO:0102925 biolink:NamedThing solanine UDP-galactose galactosyltransferase activity Catalysis of the reaction: UDP-D-galactose + solanidine = H+ + gamma-solanine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8875 molecular_function owl:Class GO:0031473 biolink:NamedThing myosin III binding Binding to a class III myosin; myosin III is monomeric and has an N terminal kinase domain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902601 biolink:NamedThing silver ion transmembrane transport The directed movement of silver ion across a membrane. tmpzr1t_l9r_go_relaxed.owl silver transmembrane transport pr 2013-12-20T11:08:46Z biological_process owl:Class GO:0043714 biolink:NamedThing (R)-citramalate synthase activity Catalysis of the reaction: pyruvate + acetyl-CoA + H2O = (R)-citramalate + CoA. tmpzr1t_l9r_go_relaxed.owl citramalate synthase EC:2.3.1.182|RHEA:19045|MetaCyc:RXN-7743 molecular_function owl:Class GO:0034874 biolink:NamedThing thioacetamide S-oxide S-oxygenase activity Catalysis of the reaction: thioacetamide S-oxide + O2 + 2 H+ + 2 e- = thioacetamide S,S-dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1313 molecular_function owl:Class GO:0034942 biolink:NamedThing cis-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity Catalysis of the reaction: cis-2-methyl-5-isopropylhexa-2,5-dienoic acid + ATP + CoASH = cis-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA + AMP + PPi. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0988 molecular_function owl:Class GO:0052614 biolink:NamedThing uracil oxygenase activity Catalysis of the reaction: uracil + NADH + O2 + H+ = ureidoacrylate peracid + NAD+. Ureidoacrylate peracid is spontaneously reduced by NADH to form ureidoacrylate. tmpzr1t_l9r_go_relaxed.owl pyrimidine oxygenase activity RHEA:31587|MetaCyc:RXN0-6444 2010-08-26T10:11:11Z molecular_function owl:Class GO:0034897 biolink:NamedThing 4-(1-ethyl-1,4-dimethyl-pentyl)phenol monooxygenase activity Catalysis of the reaction: 4-(1-ethyl-1,4-dimethyl-pentyl)phenol + O2 + 2 H+ + 2 e- = hydroquinone + 3,6-dimethylheptan-3-ol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1358 molecular_function owl:Class GO:0071581 biolink:NamedThing regulation of zinc ion transmembrane import Any process that modulates the frequency, rate or extent of zinc ion import. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-28T03:09:19Z biological_process owl:Class GO:0047718 biolink:NamedThing indanol dehydrogenase activity Catalysis of the reaction: indan-1-ol + NAD(P)+ = indanone + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl indan-1-ol:NAD(P)+ 1-oxidoreductase activity EC:1.1.1.112|MetaCyc:INDANOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0070551 biolink:NamedThing endoribonuclease activity, cleaving siRNA-paired mRNA Catalysis of the endonucleolytic cleavage of the mRNA in a double-stranded RNA molecule formed by the base pairing of an mRNA with an siRNA, yielding 5'-phosphomonoesters. tmpzr1t_l9r_go_relaxed.owl argonaute endoribonuclease activity molecular_function owl:Class GO:0047472 biolink:NamedThing 3-carboxy-cis,cis-muconate cycloisomerase activity Catalysis of the reaction: 2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoate = 3-carboxy-cis,cis-muconate + H(+). tmpzr1t_l9r_go_relaxed.owl beta-carboxymuconate lactonizing enzyme activity|3-carboxymuconate cycloisomerase type II activity|3-carboxymuconolactone hydrolase activity|3-carboxymuconate lactonizing enzyme activity|CMLE activity https://github.com/geneontology/go-ontology/issues/21794 UM-BBD_reactionID:r0582|KEGG_REACTION:R03307|RHEA:23656|MetaCyc:5.5.1.2-RXN|EC:5.5.1.2 GO:0018842 molecular_function owl:Class GO:0044677 biolink:NamedThing methyl-tetrahydromethanopterin:coenzyme M methyltransferase complex A protein complex consisted of eight polypeptides. This complex catalyzes the formation of methyl-coenzyme M and H4MPT from N5-methyl-H4MPT and CoM during methanogenesis. tmpzr1t_l9r_go_relaxed.owl methyl-H4MPT|5-methyl-5,6,7,8-tetrahydromethanopterin:2-mercaptoethane sulfonate 2-methyltransferase complex|N5-methyltetrahydromethanopterin-coenzyme M methyltransferase complex|coenzyme M methyltransferase complex jl 2012-08-09T10:58:24Z cellular_component owl:Class GO:0103045 biolink:NamedThing methione N-acyltransferase activity Catalysis of the reaction: L-methionine + acetyl-CoA = N-acetyl-L-methionine + coenzyme A + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-6948|EC:2.3.1.1|RHEA:44144 molecular_function owl:Class GO:0008976 biolink:NamedThing polyphosphate kinase activity Catalysis of the reaction: ATP + phosphate(n) = ADP + phosphate(n+1). tmpzr1t_l9r_go_relaxed.owl ATP-polyphosphate phosphotransferase activity|polyphosphate polymerase activity|polyphosphoric acid kinase activity|ATP:polyphosphate phosphotransferase activity EC:2.7.4.1|MetaCyc:POLYPHOSPHATE-KINASE-RXN|RHEA:19573 molecular_function owl:Class GO:1902434 biolink:NamedThing sulfate import across plasma membrane The directed movement of sulfate from outside of a cell, across the plasma membrane and into the cytosol. tmpzr1t_l9r_go_relaxed.owl sulphate import into cell|sulfate import into cell mah 2013-10-07T14:12:38Z biological_process owl:Class GO:1990599 biolink:NamedThing 3' overhang single-stranded DNA endodeoxyribonuclease activity Catalysis of the hydrolysis of ester linkages within 3' overhang single-stranded deoxyribonucleic acid by creating internal breaks. tmpzr1t_l9r_go_relaxed.owl al 2015-01-06T15:21:28Z molecular_function owl:Class GO:1904473 biolink:NamedThing response to L-dopa Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-dopa stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T20:15:53Z biological_process owl:Class GO:0061126 biolink:NamedThing positive regulation of positive chemotaxis to cAMP by DIF-1 Any process that increases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-1. DIF-1 is a chlorinated alkylphenone. tmpzr1t_l9r_go_relaxed.owl dph 2010-05-17T08:41:04Z biological_process owl:Class GO:0008886 biolink:NamedThing glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(2)O + NADP(+) = 3-phospho-D-glycerate + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl NADP-glyceraldehyde-3-phosphate dehydrogenase activity|D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase activity|glyceraldehyde 3-phosphate dehydrogenase (NADP)|dehydrogenase, glyceraldehyde phosphate (nicotinamide adenine dinucleotide phosphate)|nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase activity|triosephosphate dehydrogenase activity|NADP-glyceraldehyde phosphate dehydrogenase|glyceraldehyde phosphate dehydrogenase (NADP)|glyceraldehyde-3-phosphate:NADP reductase activity|glyceraldehyde-3-phosphate dehydrogenase (NADP) KEGG_REACTION:R01058|EC:1.2.1.9|MetaCyc:1.2.1.9-RXN|RHEA:14669 molecular_function owl:Class GO:0098646 biolink:NamedThing collagen sheet A protein complex that consists of collagen triple helices associated to form a sheet-like network. tmpzr1t_l9r_go_relaxed.owl collagen hexagonal network cellular_component owl:Class GO:0009578 biolink:NamedThing etioplast stroma The space enclosed by the double membrane of an etioplast but excluding the prothylakoid space. It contains the etioplast DNA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102585 biolink:NamedThing cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucoside malonyltransferase activity Catalysis of the reaction: cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucoside + malonyl-CoA + H+ <=> cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15331 molecular_function owl:Class GO:0071968 biolink:NamedThing lipid A-core heptosyltransferase activity Catalysis of the reaction: galactosyl-glucosyl3-heptosyl3-KDO2-lipid A-bisphosphate + ADP-L-glycero-beta-D-manno-heptose = lipid A-core + ADP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-5127|RHEA:30019 mah 2010-10-14T05:15:22Z molecular_function owl:Class GO:0001156 biolink:NamedThing TFIIIC-class transcription factor complex binding Binding to a general RNA polymerase III transcription factor belonging to the TFIIC complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl TFIIIC-class transcription factor binding krc 2011-01-27T05:02:22Z molecular_function owl:Class GO:0018379 biolink:NamedThing cytochrome c-heme linkage via heme-bis-L-cysteine The linkage of cytochromes and other heme proteins to heme via heme-bis-L-cysteine. tmpzr1t_l9r_go_relaxed.owl cytochrome c-haem linkage via haem-bis-L-cysteine RESID:AA0134 biological_process owl:Class GO:0070941 biolink:NamedThing eisosome assembly The aggregation, arrangement and bonding together of a set of components to form an eisosome, a cell part that is composed of the eisosome membrane and eisosome filaments. The eisosome membrane, also called the MCC domain, is a furrow-like plasma membrane sub-domain with associated integral transmembrane proteins. The eisosome filaments form a scaffolding lattice on the cytoplasmic face of the membrane. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-30T02:49:30Z biological_process owl:Class GO:0015535 biolink:NamedThing fucose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fucose(out) + H+(out) = fucose(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl fucose:hydrogen symporter activity RHEA:29023 molecular_function owl:Class GO:0048623 biolink:NamedThing seed germination on parent plant The process in which a seed germinates before being shed from the parent plant. tmpzr1t_l9r_go_relaxed.owl non-vegetative vivipary|vivipary|pre-harvest sprouting biological_process owl:Class GO:0019727 biolink:NamedThing mevaldate reductase (NAD+) activity Catalysis of the reaction: (R)-mevalonate + NAD(+) = H(+) + mevaldate + NADH. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R02246|MetaCyc:MEVALDATE-REDUCTASE-RXN|EC:1.1.1.32|RHEA:13221 molecular_function owl:Class GO:0035527 biolink:NamedThing 3-hydroxypropionate dehydrogenase (NADP+) activity Catalysis of the reaction: 3-hydroxypropanoate + NADP+ = 3-oxopropanoate + H+ + NADPH. tmpzr1t_l9r_go_relaxed.owl 3-hydroxypropanoate dehydrogenase (NADP+) activity|3-hydroxypropanoate:NADP+ oxidoreductase|3-hydroxypropionate:NADP+ oxidoreductase RHEA:26438|EC:1.1.1.298|MetaCyc:RXN-8974|KEGG_REACTION:R09289 bf 2010-05-05T10:55:07Z molecular_function owl:Class GO:0003086 biolink:NamedThing regulation of systemic arterial blood pressure by local renal renin-angiotensin The process in which angiotensinogen metabolites in the kidney modulate the force with which blood passes through the renal circulatory system. The process begins when renin cleaves angiotensinogen. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022009 biolink:NamedThing central nervous system vasculogenesis The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes in the central nervous system. The capillary endothelial cells in the brain are specialized to form the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21480 biological_process owl:Class GO:0008719 biolink:NamedThing dihydroneopterin triphosphate 2'-epimerase activity Catalysis of the reaction: dihydroneopterin triphosphate = dihydromonapterin-triphosphate. tmpzr1t_l9r_go_relaxed.owl D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase activity RHEA:28346|MetaCyc:H2NTPEPIM-RXN|EC:5.1.99.7 molecular_function owl:Class GO:0048006 biolink:NamedThing antigen processing and presentation, endogenous lipid antigen via MHC class Ib The process in which an antigen-presenting cell expresses lipid antigen of endogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family. tmpzr1t_l9r_go_relaxed.owl antigen presentation, endogenous lipid antigen|endogenous lipid antigen processing and presentation via MHC class Ib biological_process owl:Class GO:0140675 biolink:NamedThing ATP-dependent histone unloader activity Removing a histone or a histone complex from DNA. tmpzr1t_l9r_go_relaxed.owl histone unloader activity|histone unloading activity https://github.com/geneontology/go-ontology/issues/21733 pg 2021-06-29T12:43:10Z molecular_function owl:Class GO:0099586 biolink:NamedThing release of sequestered calcium ion into postsynaptic cytosol The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the postsynaptic cytosol. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019822 biolink:NamedThing P4 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P4 peroxisomes are distinguished from the other subforms on the bases of buoyant density and protein content. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P1 peroxisome ; GO:0019819', 'P2 peroxisome ; GO:0019820', 'P3 peroxisome ; GO:0019821', 'P5 peroxisome ; GO:0019823', and 'P6 peroxisome ; GO:0019824'. cellular_component owl:Class GO:0099096 biolink:NamedThing vestibular calyx terminal The giant, cup-shaped axon terminal of a vestibular afferent neuron, serving as a post-synaptic contact to a type I hair cell. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102915 biolink:NamedThing piperitol synthase activity Catalysis of the reaction: H+ + (+)-pinoresinol + NADPH + O2 <=> (+)-piperitol + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:56776|EC:1.14.19.74|MetaCyc:RXN-8695 molecular_function owl:Class GO:0051749 biolink:NamedThing indole acetic acid carboxyl methyltransferase activity Catalysis of the reaction: indole acetic acid + S-adenosyl-methionine = methyl indole acetic acid ester + S-adenosyl-homocysteine. tmpzr1t_l9r_go_relaxed.owl IAA carboxyl methyltransferase activity molecular_function owl:Class GO:0018526 biolink:NamedThing 2-aminobenzoyl-CoA reductase activity Catalysis of the reaction: 2-aminobenzoyl-CoA + 2 H+ + 2 e- = NH3 + benzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0342 molecular_function owl:Class GO:0003298 biolink:NamedThing physiological muscle hypertrophy The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-22T09:24:51Z biological_process owl:Class GO:0098986 biolink:NamedThing T-bar A T-shaped presynpatic density. These are common in arhropod central nervous systems. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034802 biolink:NamedThing branched-chain dodecylbenzene sulfonate monooxygenase activity Catalysis of the reaction: branched-chain dodecylbenzene sulfonate + 1/2 O2 + H+ = sulfurous acid + branched-chain dodecyl-4-hydroxy-benzene + sulfite. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r1079 molecular_function owl:Class GO:1990258 biolink:NamedThing histone glutamine methylation The modification of a histone by addition of a methyl group to an glutamine residue. tmpzr1t_l9r_go_relaxed.owl sp 2014-01-02T15:08:02Z biological_process owl:Class GO:0047143 biolink:NamedThing chlorate reductase activity Catalysis of the reaction: AH(2) + chlorate = A + chlorite + H(2)O + H(+). tmpzr1t_l9r_go_relaxed.owl chlorate reductase C|chlorite:acceptor oxidoreductase activity EC:1.97.1.1|UM-BBD_reactionID:r0981|MetaCyc:1.97.1.1-RXN|RHEA:16349|KEGG_REACTION:R03575 molecular_function owl:Class GO:0047921 biolink:NamedThing aminoglycoside 2'-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + gentamicin C(1a) = N(2')-acetylgentamicin C(1a) + CoA + H(+). This is acetylation of the 2'-amino group of the 6-deoxy-6-aminoglucose ring. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:gentamicin-C1a N2'-acetyltransferase activity|gentamycin acetyltransferase II|gentamycin 2'-N-acetyltransferase activity|gentamicin acetyltransferase II activity|gentamicin 2'-N-acetyltransferase activity|acetyl-CoA:gentamycin-C1a N2'-acetyltransferase activity KEGG_REACTION:R03056|RHEA:24516|EC:2.3.1.59|MetaCyc:GENTAMICIN-2-N-ACETYLTRANSFERASE-RXN molecular_function owl:Class GO:0048484 biolink:NamedThing enteric nervous system development The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035624 biolink:NamedThing receptor transactivation The process in which a receptor is activated by another receptor. Receptor transactivation can occur through different mechanisms and includes cross-talk between signaling pathways where one receptor activates a receptor for a different ligand, and also activation of subunits within a receptor oligomer. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-08T04:18:18Z biological_process owl:Class GO:0031404 biolink:NamedThing chloride ion binding Binding to a chloride ion (Cl-). tmpzr1t_l9r_go_relaxed.owl chloride binding|Cl- ion binding molecular_function owl:Class GO:0070156 biolink:NamedThing mitochondrial phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA in a mitochondrion, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035187 biolink:NamedThing hatching behavior The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell. tmpzr1t_l9r_go_relaxed.owl hatching behaviour biological_process owl:Class GO:0102763 biolink:NamedThing phytyl-P kinase activity Catalysis of the reaction: phytyl phosphate(2-) + a nucleoside triphosphate <=> (E)-3,7,11,15-tetramethylhexadec-2-en-1-yl diphosphate + a nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:38099|MetaCyc:RXN-7763 molecular_function owl:Class GO:0003848 biolink:NamedThing 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + ATP = (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate + AMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl 7,8-dihydroxymethylpterin-pyrophosphokinase activity|7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase activity|H2-pteridine-CH2OH pyrophosphokinase activity|6-hydroxymethyl-7,8-dihydropterin diphosphokinase activity|ATP:2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine 6'-diphosphotransferase activity|7,8-dihydro-6-hydroxymethylpterin diphosphokinase activity|hydroxymethyldihydropteridine pyrophosphokinase activity|6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase activity|HPPK|2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase activity KEGG_REACTION:R03503|EC:2.7.6.3|MetaCyc:H2PTERIDINEPYROPHOSPHOKIN-RXN|RHEA:11412 molecular_function owl:Class GO:0050553 biolink:NamedThing taxadiene synthase activity Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = diphosphate + taxa-4,11-diene. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl-diphosphate diphosphate-lyase (cyclizing, taxadiene-forming)|taxa-4(5),11(12)-diene synthase activity|geranylgeranyl-diphosphate diphosphate-lyase (cyclizing, taxa-4,11-diene-forming) MetaCyc:4.2.3.17-RXN|RHEA:20912|KEGG_REACTION:R06305|EC:4.2.3.17 molecular_function owl:Class GO:0036341 biolink:NamedThing chitin-based cuticle sclerotization by protein cross-linking The process of hardening of a chitin-based cuticle by protein cross-linking, and the incorporation of phenolic precursors. This mechanism of cuticle hardening occurs in insects and is usually accompanied by darkening of the cuticle. tmpzr1t_l9r_go_relaxed.owl chitin-based cuticle sclerotization by protein cross-linking and cuticle tanning bf 2012-09-11T13:51:46Z biological_process owl:Class GO:0097189 biolink:NamedThing apoptotic body A vesicle containing parts of a dying cell. Apoptotic bodies can be formed during the execution phase of the apoptotic process, when the cell's cytoskeleton breaks up and causes the membrane to bulge outward. These bulges may separate from the cell, taking a portion of cytoplasm with them, to become apoptotic bodies. These are then engulfed by phagocytic cells, and their components recycled. Apoptotic bodies may range in size from 0.8 to 5um. tmpzr1t_l9r_go_relaxed.owl apoptotic vesicle|apoptotic bleb pr 2011-11-22T08:05:20Z cellular_component owl:Class GO:0031900 biolink:NamedThing chromoplast outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the chromoplast envelope. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097009 biolink:NamedThing energy homeostasis Any process involved in the balance between food intake (energy input) and energy expenditure. tmpzr1t_l9r_go_relaxed.owl negative regulation of energy homeostasis|positive regulation of energy homeostasis|regulation of energy homeostasis pr 2011-03-21T10:52:44Z GO:2000507|GO:2000505|GO:2000506 biological_process owl:Class GO:0060486 biolink:NamedThing club cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a club cell. A club cell is an unciliated epithelial cell found in the respiratory and terminal bronchioles. tmpzr1t_l9r_go_relaxed.owl Clara cell differentiation biological_process owl:Class GO:0047600 biolink:NamedThing abequosyltransferase activity Catalysis of the reaction: CDP-abequose + D-mannosyl-L-rhamnosyl-D-galactose-1-diphospholipid = CDP + D-abequosyl-D-mannosyl-rhamnosyl-D-galactose-1-diphospholipid. tmpzr1t_l9r_go_relaxed.owl CDP-abequose:D-mannosyl-L-rhamnosyl-D-galactose-1-diphospholipid D-abequosyltransferase activity|trihexose diphospholipid abequosyltransferase activity RHEA:34183|MetaCyc:ABEQUOSYLTRANSFERASE-RXN|EC:2.4.1.60 molecular_function owl:Class GO:0018700 biolink:NamedThing 2-chloro-N-isopropylacetanilide reductive dehalogenase activity Catalysis of the reaction: 2-chloro-N-isopropylacetanilide + H+ + 2 e- = Cl- + N-isopropylacetanilide. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0719 molecular_function owl:Class GO:0047186 biolink:NamedThing N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity Catalysis of the reaction: N-acetylneuraminate + acetyl-CoA = N-acetyl-7-O(or 9-O)-acetylneuraminate + CoA. tmpzr1t_l9r_go_relaxed.owl glycoprotein 7(9)-O-acetyltransferase activity|acetyl-CoA:N-acetylneuraminate-7- or 8-O-acetyltransferase activity|sialate O-acetyltransferase|acetyl-CoA:N-acetylneuraminate-7- and/or 8-O-acetyltransferase activity|N-acetylneuraminate 7,8-O-acetyltransferase activity|acetyl-CoA:N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity|acetyl-CoA:N-acetylneuraminate-9(7)-O-acetyltransferase activity|N-acetylneuraminate 7(8)-O-acetyltransferase activity|acetyl-CoA:N-acetylneuraminate-9(or 7)-O-acetyltransferase activity|N-acetylneuraminate O7-(or O9-)acetyltransferase activity RHEA:20808|EC:2.3.1.45|MetaCyc:2.3.1.45-RXN molecular_function owl:Class GO:0071130 biolink:NamedThing alpha5-beta1 integrin-LPP3 complex A protein complex that consists of an alpha5-beta1 integrin complex bound to lipid phosphate phosphohydrolase-3. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-PPAP2B complex mah 2009-11-13T02:25:47Z cellular_component owl:Class GO:0110135 biolink:NamedThing Norrin signaling pathway The series of molecular signals initiated by binding of the cysteine knot protein Norrin to a Frizzled 4 (Fzd4) family receptor on the surface of the target cell and ending with a change in cell state. tmpzr1t_l9r_go_relaxed.owl kmv 2019-01-18T19:07:18Z biological_process owl:Class GO:1905370 biolink:NamedThing serine-type endopeptidase complex A protein complex which is capable of serine-type endopeptidase activity. tmpzr1t_l9r_go_relaxed.owl An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay). bhm 2016-08-16T13:09:57Z cellular_component owl:Class GO:0047906 biolink:NamedThing fucosterol-epoxide lyase activity Catalysis of the reaction: (24R,24'R)-fucosterol epoxide = acetaldehyde + desmosterol. tmpzr1t_l9r_go_relaxed.owl (24R,24'R)-fucosterol-epoxide acetaldehyde-lyase activity|(24R,24'R)-fucosterol-epoxide acetaldehyde-lyase (desmosterol-forming) EC:4.1.2.33|MetaCyc:FUCOSTEROL-EPOXIDE-LYASE-RXN|RHEA:10884|KEGG_REACTION:R03723 molecular_function owl:Class GO:0034029 biolink:NamedThing 2-oxoglutarate carboxylase activity Catalysis of the reaction: 2-oxoglutarate + ATP + bicarbonate = ADP + 2 H(+) + oxalosuccinate + phosphate. tmpzr1t_l9r_go_relaxed.owl oxalosuccinate synthetase activity|CFI|carboxylating factor for ICDH|OGC KEGG_REACTION:R08201|RHEA:20425|MetaCyc:RXN-8457|EC:6.4.1.7 molecular_function owl:Class GO:0006592 biolink:NamedThing ornithine biosynthetic process The chemical reactions and pathways resulting in the formation of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. tmpzr1t_l9r_go_relaxed.owl ornithine anabolism|ornithine formation|ornithine synthesis|ornithine biosynthesis biological_process owl:Class GO:0047866 biolink:NamedThing dimethylglycine oxidase activity Catalysis of the reaction: N,N-dimethylglycine + H(2)O + O(2) = formaldehyde + H(2)O(2) + sarcosine. tmpzr1t_l9r_go_relaxed.owl N,N-dimethylglycine:oxygen oxidoreductase (demethylating) MetaCyc:DIMETHYLGLYCINE-OXIDASE-RXN|KEGG_REACTION:R01564|RHEA:17077|EC:1.5.3.10 molecular_function owl:Class GO:0047772 biolink:NamedThing carboxymethyloxysuccinate lyase activity Catalysis of the reaction: carboxymethoxysuccinate = fumarate + glycolate. tmpzr1t_l9r_go_relaxed.owl carboxymethyloxysuccinate glycolate-lyase activity|carboxymethyloxysuccinate glycolate-lyase (fumarate-forming) RHEA:12336|MetaCyc:CARBOXYMETHYLOXYSUCCINATE-LYASE-RXN|EC:4.2.99.12|KEGG_REACTION:R01336 molecular_function owl:Class GO:0099014 biolink:NamedThing neuronal dense core vesicle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuronal dense core vesicle. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071269 biolink:NamedThing L-homocysteine biosynthetic process The chemical reactions and pathways resulting in the formation of L-homocysteine, the L-enantiomer of 2-amino-4-sulfanylbutanoic acid. tmpzr1t_l9r_go_relaxed.owl L-homocysteine biosynthesis|L-homocysteine synthesis|L-homocysteine anabolism|L-homocysteine formation mah 2009-12-09T05:36:37Z biological_process owl:Class GO:0046366 biolink:NamedThing allose biosynthetic process The chemical reactions and pathways resulting in the formation of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3. tmpzr1t_l9r_go_relaxed.owl allose anabolism|allose biosynthesis|allose synthesis|allose formation biological_process owl:Class GO:0004837 biolink:NamedThing tyrosine decarboxylase activity Catalysis of the reaction: L-tyrosine = tyramine + CO2. tmpzr1t_l9r_go_relaxed.owl L-tyrosine carboxy-lyase activity|L-(-)-tyrosine apodecarboxylase activity|L-tyrosine decarboxylase activity|L-tyrosine carboxy-lyase (tyramine-forming) MetaCyc:TYROSINE-DECARBOXYLASE-RXN|RHEA:14345|EC:4.1.1.25 molecular_function owl:Class GO:0048188 biolink:NamedThing Set1C/COMPASS complex A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. tmpzr1t_l9r_go_relaxed.owl COMPASS complex|Set1/COMPASS complex|Set1C cellular_component owl:Class GO:0051750 biolink:NamedThing delta3,5-delta2,4-dienoyl-CoA isomerase activity Catalysis of the isomerization of 3,5-dienoyl-CoA to 2,4-dienoyl-CoA. tmpzr1t_l9r_go_relaxed.owl delta5-delta2,4-dienoyl-CoA isomerase activity|delta(3,5),delta(2,4)-dienoyl-coenzyme A isomerase activity GO:0008416 molecular_function owl:Class GO:0002126 biolink:NamedThing instrumental aggressive behavior Aggressive behavior directed towards obtaining some goal, considered to be a learned response to a situation. tmpzr1t_l9r_go_relaxed.owl instrumental aggression biological_process owl:Class GO:0140563 biolink:NamedThing UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity Catalyzes the reaction: UDP-alpha-D-xylose + [protein with EGF-like domain]-3-O-(beta-D-glucosyl)-L-serine <=> UDP + [protein with EGF-like domain]-3-O-(alpha-D-xylosyl-(1->3)-beta-D-glucosyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16869 RHEA:56064|EC:2.4.2.42 pg 2020-11-25T16:07:58Z molecular_function owl:Class GO:0043784 biolink:NamedThing cob(II)yrinic acid a,c-diamide reductase activity Catalysis of the reaction: 2 cob(I)yrinate a,c diamide + FMN + 3 H(+) = 2 cob(II)yrinate a,c diamide + FMNH(2). tmpzr1t_l9r_go_relaxed.owl cob(II)yrinic acid-a,c-diamide:FMN oxidoreductase activity KEGG_REACTION:R05218|RHEA:24300|EC:1.16.8.1|MetaCyc:R343-RXN molecular_function owl:Class GO:0047765 biolink:NamedThing caldesmon-phosphatase activity Catalysis of the reaction: caldesmon phosphate + H2O = caldesmon + phosphate. tmpzr1t_l9r_go_relaxed.owl caldesmon-phosphate phosphohydrolase activity|SMP-I|smooth muscle caldesmon phosphatase activity EC:3.1.3.55|MetaCyc:CALDESMON-PHOSPHATASE-RXN molecular_function owl:Class GO:0036357 biolink:NamedThing 2-phosphoglycerate kinase activity Catalysis of the reaction: 2-phosphoglycerate + ATP = 2,3-diphosphoglycerate + ADP. tmpzr1t_l9r_go_relaxed.owl 2PGK activity EC:2.7.2.- This reaction is the first step in the biosynthesis of cyclic 2,3-diphosphoglycerate (cDPG). bf 2012-09-19T15:06:25Z molecular_function owl:Class GO:0080071 biolink:NamedThing indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: indol-3-yl-methyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = indol-3-yl-methyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1443 dhl 2009-04-13T04:08:33Z molecular_function owl:Class GO:0016752 biolink:NamedThing sinapoyltransferase activity Catalysis of the transfer of a sinapoyl group to an acceptor molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009773 biolink:NamedThing photosynthetic electron transport in photosystem I A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102943 biolink:NamedThing trans-2,3-dihydro-3-hydroxy-anthranilate isomerase activity Catalysis of the reaction: (2S,3S)-2,3-dihydro-3-hydroxyanthranilic acid = (1R,6S)-6-ammonio-5-oxocyclohex-2-ene-1-carboxylate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9031|RHEA:28182|EC:5.3.3.17 molecular_function owl:Class GO:0047285 biolink:NamedThing flavonol-3-O-glycoside xylosyltransferase activity Catalysis of the reaction: flavonol 3-O-glycoside + UDP-D-xylose = flavonol 3-O-D-xylosylglycoside + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-D-xylose:flavonol-3-O-glycoside 2''-O-beta-D-xylosyltransferase activity EC:2.4.2.35|RHEA:19701|MetaCyc:2.4.2.35-RXN molecular_function owl:Class GO:0047083 biolink:NamedThing 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity Catalysis of the reaction: O2 + NADPH + H+ + trans-5-O-(4-coumaroyl)-D-quinate = H2O + NADP+ + trans-5-O-caffeoyl-D-quinate. tmpzr1t_l9r_go_relaxed.owl coumaroylquinate(coumaroylshikimate) 3'-monooxygenase activity|trans-5-O-(4-coumaroyl)-D-quinate,NADPH:oxygen oxidoreductase (3'-hydroxylating)|5-O-(4-coumaroyl)-D-quinate/shikimate 3'-hydroxylase activity MetaCyc:1.14.13.36-RXN|RHEA:16265|EC:1.14.14.96 molecular_function owl:Class GO:0031836 biolink:NamedThing neuromedin K receptor binding Binding to a neuromedin K receptor. tmpzr1t_l9r_go_relaxed.owl neuromedin K receptor ligand|neurokinin-B receptor binding molecular_function owl:Class GO:0032517 biolink:NamedThing SOD1-calcineurin complex A protein complex formed by the association of superoxide dismutase 1 (SOD1) with calcineurin; complex formation is implicated in activation of calcineurin by SOD1. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047690 biolink:NamedThing aspartyltransferase activity Catalysis of the reaction: L-asparagine + H(+) + hydroxylamine = beta-L-aspartylhydroxamate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl aspartotransferase activity|beta-aspartyl transferase activity|L-asparagine:hydroxylamine gamma-aspartyltransferase activity RHEA:11252|EC:2.3.2.7|MetaCyc:ASPARTYLTRANSFERASE-RXN|KEGG_REACTION:R01485 molecular_function owl:Class GO:0008613 biolink:NamedThing diuretic hormone activity The action characteristic of a diuretic hormone, a peptide hormone that, upon receptor binding, regulates water balance and fluid secretion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0045228 biolink:NamedThing slime layer polysaccharide biosynthetic process The chemical reactions and pathways resulting in the formation of polysaccharides in the slime layer, a diffused layer of polysaccharide exterior to the bacterial cell wall. tmpzr1t_l9r_go_relaxed.owl slime layer polysaccharide biosynthesis|slime layer polysaccharide synthesis|slime layer polysaccharide anabolism|slime layer polysaccharide formation biological_process owl:Class GO:0045231 biolink:NamedThing slime layer organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a slime layer. A slime layer is an easily removed, diffuse, unorganized layer of extracellular material that surrounds a cell. tmpzr1t_l9r_go_relaxed.owl slime layer organization and biogenesis|slime layer organisation biological_process owl:Class GO:0047937 biolink:NamedThing glucose-1-phosphate phosphodismutase activity Catalysis of the reaction: 2 D-glucose 1-phosphate = D-glucose + D-glucose 1,6-bisphosphate. tmpzr1t_l9r_go_relaxed.owl D-glucose-1-phosphate:D-glucose-1-phosphate 6-phosphotransferase activity|phosphodismutase activity|glucose 1-phosphate transphosphorylase activity RHEA:16397|EC:2.7.1.41|MetaCyc:GLUCOSE-1-PHOSPHATE-PHOSPHODISMUTASE-RXN molecular_function owl:Class GO:0032983 biolink:NamedThing kainate selective glutamate receptor complex An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluK1-3 (also called GluR5-7), GluK4 (KA1) and GluK5 (KA2) subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0071949 biolink:NamedThing FAD binding Binding to the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. tmpzr1t_l9r_go_relaxed.owl oxidized flavin adenine dinucleotide binding|oxidized flavine-adenine dinucleotide binding mah 2010-10-07T12:30:28Z molecular_function owl:Class GO:0031842 biolink:NamedThing type 1 neuropeptide Y receptor binding Binding to a type 1 neuropeptide Y receptor. tmpzr1t_l9r_go_relaxed.owl type 1 neuropeptide Y receptor ligand molecular_function owl:Class GO:0140665 biolink:NamedThing ATP-dependent H3-H4 histone complex loader activity Loading of a histone H3-H4 complex onto DNA, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl histone H3-H4 dimer loading activity|H3-H4 dimer loading activity|histone chaperone|H3-H4 histone complex loader activity|H3-H4 histone chaperone https://github.com/geneontology/go-ontology/issues/21733|https://github.com/geneontology/go-ontology/issues/21580 pg 2021-06-22T13:57:16Z molecular_function owl:Class GO:0097681 biolink:NamedThing double-strand break repair via alternative nonhomologous end joining An instance of double-strand break repair via nonhomologous end joining that is independent of factors important for V(D)J recombination (as opposed to classical nonhomologous end joining). It often results in a deletion with microhomology (i.e. 5-25bp homology) at the repair junction. Among different subclasses of nonhomologous end joining (NHEJ), alternative NHEJ appears to play a significant role in the etiology of mutations that arise during cancer development and treatment. tmpzr1t_l9r_go_relaxed.owl alt-NHEJ|MMEJ|A-NHEJ|double-strand break repair via microhomology-mediated end joining pr 2014-12-17T15:17:45Z biological_process owl:Class GO:0102681 biolink:NamedThing isoamylase (maltodextrin-releasing) activity Catalysis of the reaction: n H2O + a glycogen <=> n a maltodextrin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4301 molecular_function owl:Class GO:0033390 biolink:NamedThing putrescine biosynthetic process from arginine via N-carbamoylputrescine The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine, via the intermediate N-carbamoylputrescine; in this pathway, arginine is converted to agmatine, and agmatine is converted to putrescine in two single enzymatic steps. tmpzr1t_l9r_go_relaxed.owl putrescine biosynthesis from arginine via N-carbamoylputrescine|putrescine anabolism from arginine via N-carbamoylputrescine|putrescine formation from arginine via N-carbamoylputrescine|putrescine synthesis from arginine via N-carbamoylputrescine biological_process owl:Class GO:0080015 biolink:NamedThing sabinene synthase activity Catalysis of the reaction: geranyl diphosphate = sabinene + diphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-5103|EC:4.2.3.- molecular_function owl:Class GO:0042761 biolink:NamedThing very long-chain fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid which has a chain length greater than C22. tmpzr1t_l9r_go_relaxed.owl very-long-chain fatty acid biosynthetic process|very-long-chain fatty acid anabolism|very-long-chain fatty acid synthesis|very-long-chain fatty acid biosynthesis|very-long-chain fatty acid formation MetaCyc:PWY-5080 biological_process owl:Class GO:0035529 biolink:NamedThing NADH pyrophosphatase activity Catalysis of the reaction: NADH + H2O = AMP + NMNH + 2 H+. tmpzr1t_l9r_go_relaxed.owl NADH pyrophosphohydrolase activity|NADH diphosphatase activity EC:3.6.1.9|MetaCyc:RXN0-4401|KEGG_REACTION:R00103|Reactome:R-HSA-6809287 bf 2010-05-05T04:55:10Z molecular_function owl:Class GO:0016110 biolink:NamedThing tetraterpenoid catabolic process The chemical reactions and pathways resulting in the breakdown of tetraterpenoid compounds, terpenoids with eight isoprene units. tmpzr1t_l9r_go_relaxed.owl tetraterpene catabolic process|tetraterpenoid degradation|tetraterpenoid catabolism|tetraterpenoid breakdown|tetraterpene catabolism biological_process owl:Class GO:0097713 biolink:NamedThing dolichol-phosphate-mannose synthase regulator activity Binds to and modulates the activity of dolichol-phosphate-mannose synthase. tmpzr1t_l9r_go_relaxed.owl pr 2016-08-23T11:19:37Z molecular_function owl:Class GO:0102989 biolink:NamedThing 5-pentadecatrienylresorcinol synthase activity Catalysis of the reaction: 3 H+ + 9,12,15-cis-hexadecatrienoyl-CoA + 3 malonyl-CoA(5-) <=> 5-(pentadeca-8,11,14-trien-1-yl)resorcinol + 4 coenzyme A + 4 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9618 molecular_function owl:Class GO:0102706 biolink:NamedThing butein:oxygen oxidoreductase activity Catalysis of the reaction: butein 4'-beta-D-glucoside + O2 = aureusidin 6-O-beta-glucoside + H2O + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:34203|EC:1.21.3.6|MetaCyc:RXN-6242 molecular_function owl:Class GO:0150088 biolink:NamedThing multiple synapse bouton, contacting multiple dendrites A single axon terminal bouton making contact onto two or more dendritic spines protruding from multiple dendrites. tmpzr1t_l9r_go_relaxed.owl type 2 multiple-synapse bouton|type 2 multiple spine synapse bouton|type 2 multi-synapse bouton|type 2 multisynapse bouton|type 2 multi-synaptic bouton|MSB2|type 2 multisynaptic bouton bc 2018-08-08T13:31:43Z cellular_component owl:Class GO:1903102 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate biosynthesis|1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate anabolism|1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate formation|1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate synthesis bhm 2014-06-04T14:14:36Z biological_process owl:Class GO:0044817 biolink:NamedThing hydrogen generation via biophotolysis The production of hydrogen which results from the dissociation by light of water into molecular hydrogen and oxygen. This process is observed in cyanobacteria and microalgae. tmpzr1t_l9r_go_relaxed.owl hydrogen biosynthesis via biophotolysis jl 2013-10-22T14:36:54Z biological_process owl:Class GO:0031886 biolink:NamedThing type 1 member 3 taste receptor binding Binding to a type 1 member 3 taste receptor. tmpzr1t_l9r_go_relaxed.owl type 1 member 3 taste receptor ligand|sweet taste receptor binding molecular_function owl:Class GO:0052719 biolink:NamedThing apurinic/apyrimidinic endoribonuclease activity Catalysis of the hydrolysis of ester linkages immediately 5' to an apurinic/apyrimidinic (AP; also called abasic) site within a ribonucleic acid molecule by creating internal breaks, generating a single-strand break with 5'-ribose phosphate and 3'-hydroxyl ends. tmpzr1t_l9r_go_relaxed.owl abasic endoribonuclease activity|apyrimidinic endoribonuclease activity|apurinic endoribonuclease activity|AP endoribonuclease activity molecular_function owl:Class GO:0080108 biolink:NamedThing S-alkylthiohydroximate lyase activity Catalysis of the conversion of a S-alkylthiohydroximate to a thiohydroximate. tmpzr1t_l9r_go_relaxed.owl S-alkylthiohydroximate C-S lyase activity dhl 2009-04-23T04:35:14Z molecular_function owl:Class GO:0004422 biolink:NamedThing hypoxanthine phosphoribosyltransferase activity Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl IMP:diphosphate phospho-D-ribosyltransferase activity|guanine-hypoxanthine phosphoribosyltransferase activity|inosinic pyrophosphorylase activity|HGPRTase activity|IMP pyrophosphorylase activity|inosinate pyrophosphorylase activity|IMP-GMP pyrophosphorylase activity|Transphosphoribosidase activity|hypoxanthine-guanine phosphoribosyltransferase activity|IMP diphosphorylase activity|inosine 5'-phosphate pyrophosphorylase activity|inosinic acid pyrophosphorylase activity|6-mercaptopurine phosphoribosyltransferase activity|6-hydroxypurine phosphoribosyltransferase activity|purine-6-thiol phosphoribosyltransferase activity|HPRT RHEA:17973|KEGG_REACTION:R01132|EC:2.4.2.8|MetaCyc:HYPOXANPRIBOSYLTRAN-RXN|Reactome:R-HSA-74215 molecular_function owl:Class GO:0044587 biolink:NamedThing cellopentaose binding Binding to a cellopentaose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-24T04:57:01Z molecular_function owl:Class GO:0033702 biolink:NamedThing (+)-trans-carveol dehydrogenase activity Catalysis of the reaction: (1R,5S)-carveol + NAD(+) = (S)-carvone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl (+)-trans-carveol:NAD+ oxidoreductase activity MetaCyc:RXN-9397|RHEA:14825|KEGG_REACTION:R06117|EC:1.1.1.275 molecular_function owl:Class GO:1990860 biolink:NamedThing Pho85-Pho80 CDK-cyclin complex A cyclin dependent kinase (CDK) complex that contains a kinase subunit and a regulatory cyclin subunit. An example of this complex in budding yeast S. cerevisiae consists of the Pho85 kinase and the Pho80 cyclin. tmpzr1t_l9r_go_relaxed.owl rb 2015-09-24T17:53:50Z cellular_component owl:Class GO:0047129 biolink:NamedThing opine dehydrogenase activity Catalysis of the reaction: (2S)-2-[(R)-1-carboxyethylamino]pentanoate + H(2)O + NAD(+) = L-2-aminopentanoate + H(+) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl (2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate dehydrogenase (NAD, L-aminopentanoate-forming)|(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate:NAD+ oxidoreductase (L-aminopentanoate-forming) KEGG_REACTION:R03732|EC:1.5.1.28|MetaCyc:1.5.1.28-RXN|RHEA:21592 molecular_function owl:Class GO:1904608 biolink:NamedThing response to monosodium L-glutamate Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosodium L-glutamate stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-27T18:43:08Z biological_process owl:Class GO:1990306 biolink:NamedThing RSP5-BUL ubiquitin ligase complex A ubiquitin ligase complex consisting of RSP5 and BUL components. It polyubiquinates plasma membrane transporters and permeases, required for their endocytosis and subsequent degradation in the vacuole. BUL1 or BUL2, respectively, bind to the target protein, enabling ubiquitylation by Rsp5. Phosphorylation of BUL proteins results in binding to 14-3-3 proteins, protecting the permeases from down-regulation. tmpzr1t_l9r_go_relaxed.owl RSP5-BUL1 complex|RSP5-BUL2 complex This complex has been identified in Saccharomyces cerevisiae (P19812) - see PMID:9931424 bhm 2014-03-03T22:53:01Z cellular_component owl:Class GO:0052794 biolink:NamedThing exo-alpha-(2->3)-sialidase activity Catalysis of the hydrolysis of alpha-(2->3)-glycosidic linkages of terminal sialic residues in substrates. tmpzr1t_l9r_go_relaxed.owl exo-alpha-2,3-sialidase activity|exo-alpha-(2,3)-sialidase activity EC:3.2.1.18 molecular_function owl:Class GO:0019185 biolink:NamedThing snRNA-activating protein complex A protein complex that recognizes the proximal sequence element of RNA polymerase II and III snRNA promoters. tmpzr1t_l9r_go_relaxed.owl SNAPc cellular_component owl:Class GO:0090436 biolink:NamedThing leaf pavement cell development The process whose specific outcome is the progression of an leaf pavement cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a leaf pavement cell fate. tmpzr1t_l9r_go_relaxed.owl tb 2012-07-31T16:08:53Z biological_process owl:Class GO:0047756 biolink:NamedThing chondroitin 4-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 4'-sulfate. tmpzr1t_l9r_go_relaxed.owl 3'-phosphoadenylyl-sulfate:chondroitin 4'-sulfotransferase activity|chondroitin 4-sulphotransferase activity EC:2.8.2.5|Reactome:R-HSA-1971483|RHEA:16101|MetaCyc:CHONDROITIN-4-SULFOTRANSFERASE-RXN molecular_function owl:Class GO:0047565 biolink:NamedThing 3-hydroxypropionate dehydrogenase (NAD+) activity Catalysis of the reaction: 3-hydroxypropanoate + NAD(+) = 3-oxopropanoate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 3-hydroxypropanoate:NAD+ oxidoreductase activity MetaCyc:3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN|EC:1.1.1.59|RHEA:13357|KEGG_REACTION:R01608 molecular_function owl:Class GO:0140069 biolink:NamedThing histone butyryltransferase activity Catalysis of the reaction: butyryl-CoA + histone = CoA + butyryl-histone. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-20T16:56:33Z molecular_function owl:Class GO:0034678 biolink:NamedThing integrin alpha8-beta1 complex An integrin complex that comprises one alpha8 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha8-beta1 integrin complex|ITGA8-ITGB1 complex cellular_component owl:Class GO:1990342 biolink:NamedThing heterochromatin island A region of facultative heterochromatin formed dynamically at specific loci in response to environmental signals, independently of RNAi. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/11247 An example of this type of heterochromatin is found in Schizosaccharomyces pombe, where heterochromatin islands are formed at meiotic genes during vegetative (mitotic) growth. mah 2014-03-21T15:26:44Z cellular_component owl:Class GO:0042183 biolink:NamedThing formate catabolic process The chemical reactions and pathways resulting in the breakdown of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. tmpzr1t_l9r_go_relaxed.owl formate catabolism|formic acid catabolism|formic acid catabolic process|formate breakdown|formate degradation biological_process owl:Class GO:0006229 biolink:NamedThing dUTP biosynthetic process The chemical reactions and pathways resulting in the formation of dUTP, deoxyuridine (5'-)triphosphate. tmpzr1t_l9r_go_relaxed.owl dUTP formation|dUTP biosynthesis|dUTP anabolism|dUTP synthesis biological_process owl:Class GO:0071199 biolink:NamedThing Kv4.1-DPP10 channel complex A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.1. tmpzr1t_l9r_go_relaxed.owl Kv4.1-DPPY channel complex CORUM:601 mah 2009-11-23T05:17:50Z cellular_component owl:Class GO:0036235 biolink:NamedThing acyl deglucuronidation The removal of glucuronic acid from an acyl-glucuronide. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-18T04:24:11Z biological_process owl:Class GO:0036234 biolink:NamedThing deglucuronidation The removal of glucuronic acid from a conjugated substrate. tmpzr1t_l9r_go_relaxed.owl bf 2012-05-18T04:23:04Z biological_process owl:Class GO:0018723 biolink:NamedThing 3-phenanthrol sulfotransferase activity Catalysis of the reaction: 3-phenanthrol + X-SO3(-) = HX + 3-phenanthrylsulfate. tmpzr1t_l9r_go_relaxed.owl 3-phenanthrol sulphotransferase activity UM-BBD_reactionID:r0561 molecular_function owl:Class GO:0033720 biolink:NamedThing (S)-mandelate dehydrogenase activity Catalysis of the reaction: (S)-2-hydroxy-2-phenylacetate + acceptor = 2-oxo-2-phenylacetate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl MDH|(S)-2-hydroxy-2-phenylacetate:acceptor 2-oxidoreductase activity|L(+)-mandelate dehydrogenase activity EC:1.1.99.31|RHEA:15749|MetaCyc:MANDELATE-DEHYDROGENASE-RXN|UM-BBD_reactionID:r1048|MetaCyc:MANDELATE-OXY-RXN molecular_function owl:Class GO:0061205 biolink:NamedThing paramesonephric duct development The process whose specific outcome is the progression of the paramesonephric duct over time, from its formation to the mature structure. Mullerian ducts (or paramesonephric ducts) are paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, cervix, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin. tmpzr1t_l9r_go_relaxed.owl Mullerian duct development dph 2010-07-30T10:54:47Z biological_process owl:Class GO:0102202 biolink:NamedThing soladodine glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + solasodine <=> UDP + solasodine 3-O-beta-D-glucopyranoside + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12123|RHEA:61844|EC:2.4.1.173 molecular_function owl:Class GO:0016443 biolink:NamedThing bidentate ribonuclease III activity Catalysis of the digestion of double-stranded RNAs into 20 to 30-nucleotide products. These products typically associate to the RNA-induced silencing complex and serve as guide RNAs for posttranslational RNA interference. tmpzr1t_l9r_go_relaxed.owl bidentate RNase III activity EC:3.1.26.- molecular_function owl:Class GO:0019920 biolink:NamedThing peptidyl-1-thioglycine biosynthetic process, internal The chemical reactions and pathways resulting in the formation of internal peptidyl-1-thioglycine, which has an internal C=S bond, instead of an internal C=O bond, in the peptide. tmpzr1t_l9r_go_relaxed.owl peptidyl-1-thioglycine anabolism, internal|peptidyl-1-thioglycine formation, internal|peptidyl-1-thioglycine synthesis, internal RESID:AA0265 biological_process owl:Class GO:0102842 biolink:NamedThing 1-18:1-2-16:2-monogalactosyldiacylglycerol desaturase activity (SN2-16:3 forming) Catalysis of the reaction: 1-18:1-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:1-2-16:3-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8303|EC:1.14.19.35|RHEA:46412 molecular_function owl:Class GO:0050055 biolink:NamedThing limonin-D-ring-lactonase activity Catalysis of the reaction: limonoate D-ring-lactone + H2O = limonoate. tmpzr1t_l9r_go_relaxed.owl limonin lactone hydrolase activity|limonoate-D-ring-lactone lactonohydrolase activity|limonin-D-ring-lactone hydrolase activity EC:3.1.1.36|MetaCyc:LIMONIN-D-RING-LACTONASE-RXN|RHEA:10896 molecular_function owl:Class GO:0050229 biolink:NamedThing pterocarpin synthase activity Catalysis of the reaction: medicarpin + NADP+ = vestitone + NADPH. tmpzr1t_l9r_go_relaxed.owl pterocarpan synthase activity|medicarpin:NADP+ 2'-oxidoreductase activity MetaCyc:PTEROCARPIN-SYNTHASE-RXN|RHEA:13533|EC:1.1.1.246 molecular_function owl:Class GO:0003976 biolink:NamedThing UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lysosomal-enzyme D-mannose = UMP + lysosomal-enzyme N-acetyl-D-glucosaminyl-phospho-D-mannose. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosaminyl phosphotransferase activity|lysosomal enzyme precursor acetylglucosamine-1-phosphotransferase activity|UDP-N-acetylglucosamine:glycoprotein N-acetylglucosaminyl-1-phosphotransferase activity|UDP-GlcNAc:glycoprotein N-acetylglucosamine-1-phosphotransferase activity|UDP-N-acetyl-D-glucosamine:lysosomal-enzyme N-acetylglucosaminephosphotransferase activity|N-acetylglucosaminylphosphotransferase activity|UDP-N-acetylglucosamine:glycoprotein N-acetylglucosamine-1-phosphotransferase activity|UDP-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase activity MetaCyc:2.7.8.17-RXN|EC:2.7.8.17|RHEA:13581 molecular_function owl:Class GO:0045232 biolink:NamedThing S-layer organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an S-layer enveloping the cell. The S-layer is a crystalline protein layer surrounding some bacteria. tmpzr1t_l9r_go_relaxed.owl S-layer organisation|S-layer organization and biogenesis biological_process owl:Class GO:0051506 biolink:NamedThing ergosterol UDP-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + ergosterol = UDP + O-glucosyl-ergosterol. tmpzr1t_l9r_go_relaxed.owl RHEA:61836|MetaCyc:RXN-16975) molecular_function owl:Class GO:0043540 biolink:NamedThing 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis. tmpzr1t_l9r_go_relaxed.owl 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 complex|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 complex|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 complex|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex Note that we use this single class to represent all 4 isoforms of this complex. We decided to do this because the isoforms do not differ in function, rather in expression and regulation. We may want to revisit this in future. cellular_component owl:Class GO:0043739 biolink:NamedThing G/U mismatch-specific uracil-DNA glycosylase activity Catalysis of the removal of uracil from a U*G mispair by the cleavage the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free uracil and leaves an apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl GU mismatch-specific uracil-DNA glycosylase activity|MUG|uracil mismatch repair protein molecular_function owl:Class GO:0030781 biolink:NamedThing 6-O-methylnorlaudanosoline 5'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 6-O-methylnorlaudanosoline = S-adenosyl-L-homocysteine + nororientaline. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:6-O-methylnorlaudanosoline 5'-O-methyltransferase activity MetaCyc:2.1.1.121-RXN|EC:2.1.1.121|RHEA:11892 molecular_function owl:Class GO:0047361 biolink:NamedThing phosphomannan mannosephosphotransferase activity Catalysis of the reaction: phosphomannan(n) + GDP-mannose = phosphomannan(n+1) + GMP. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:phosphomannan mannose phosphotransferase activity EC:2.7.8.9|MetaCyc:2.7.8.9-RXN molecular_function owl:Class GO:0070312 biolink:NamedThing RAD52-ERCC4-ERCC1 complex A nucleotide-excision repair complex formed by the association of the heterodimeric endonuclease XPF/ERCC4-ERCC1 (Rad1p and Rad10p in S. cerevisiae) with the RAD52 protein. tmpzr1t_l9r_go_relaxed.owl Note that process and function information are included in the term and definition for the purpose of describing and distinguishing the complex. cellular_component owl:Class GO:0097655 biolink:NamedThing serpin family protein binding Binding to a member of the serpin protein family (serine protease inhibitors or classified inhibitor family I4). Serpins are a broadly distributed family of protease inhibitors that use a conformational change to inhibit target enzymes. They are central in controlling many important proteolytic cascades. The majority of serpins inhibit serine proteases, but serpins that inhibit caspases and papain-like cysteine proteases have also been identified. Rarely, serpins perform a non-inhibitory function; for example, several human serpins function as hormone transporters and certain serpins function as molecular chaperones or tumor suppressors. tmpzr1t_l9r_go_relaxed.owl pr 2014-09-24T16:19:31Z molecular_function owl:Class GO:0004423 biolink:NamedThing iduronate-2-sulfatase activity Catalysis of the hydrolysis of the 2-sulfate groups of the L-iduronate 2-sulfate units of dermatan sulfate, heparan sulfate and heparin. tmpzr1t_l9r_go_relaxed.owl idurono-2-sulfatase activity|iduronate sulfate sulfatase activity|L-iduronate 2-sulfate sulfatase activity|iduronate sulfatase activity|sulfo-L-iduronate sulfatase activity|2-sulfo-L-iduronate 2-sulfatase activity|L-iduronate-2-sulfate 2-sulfohydrolase activity|L-iduronosulfatase activity|iduronide-2-sulfate sulfatase activity|chondroitinsulfatase|L-idurono sulfate sulfatase activity|iduronate-2-sulphatase activity|iduronate-2-sulfate sulfatase activity|sulfoiduronate sulfohydrolase activity Reactome:R-HSA-1793182|Reactome:R-HSA-2262743|Reactome:R-HSA-9036046|Reactome:R-HSA-1678650|EC:3.1.6.13|MetaCyc:3.1.6.13-RXN molecular_function owl:Class GO:0008923 biolink:NamedThing lysine decarboxylase activity Catalysis of the reaction: L-lysine + H(+) = cadaverine + CO(2). tmpzr1t_l9r_go_relaxed.owl L-lysine carboxy-lyase activity|L-lysine carboxy-lyase (cadaverine-forming) MetaCyc:PWY0-461|EC:4.1.1.18|RHEA:22352|KEGG_REACTION:R00462|MetaCyc:LYSDECARBOX-RXN molecular_function owl:Class GO:1990450 biolink:NamedThing linear polyubiquitin binding Binding to a linear polymer of ubiquitin. Linear ubiquitin polymers are formed by linking the amino-terminal methionine (M1) of one ubiquitin molecule to the carboxy-terminal glycine (G76) of the next. tmpzr1t_l9r_go_relaxed.owl M1-linked ubiquitin chain binding bf 2014-08-06T11:10:26Z molecular_function owl:Class GO:0043130 biolink:NamedThing ubiquitin binding Binding to ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-205008|Reactome:R-HSA-983152|Reactome:R-HSA-1169404 molecular_function owl:Class GO:0032705 biolink:NamedThing negative regulation of interleukin-21 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-21 production. tmpzr1t_l9r_go_relaxed.owl down-regulation of interleukin-21 production|down regulation of interleukin-21 production|downregulation of interleukin-21 production|negative regulation of interleukin-21 biosynthetic process GO:0045391 biological_process owl:Class GO:0019652 biolink:NamedThing lactate fermentation to propionate and acetate The anaerobic enzymatic conversion of lactate to propionate, concomitant with the oxidation of lactate to acetate and CO2 and yielding energy in the form of adenosine triphosphate (ATP). tmpzr1t_l9r_go_relaxed.owl nonrandomizing pathway|acrylate pathway|propionate fermentation MetaCyc:PROPFERM-PWY biological_process owl:Class GO:0004502 biolink:NamedThing kynurenine 3-monooxygenase activity Catalysis of the reaction: L-kynurenine + H(+) + NADPH + O(2) = 3-hydroxy-L-kynurenine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl L-kynurenine,NADPH:oxygen oxidoreductase (3-hydroxylating)|L-kynurenine-3-hydroxylase activity|kynurenine 3-hydroxylase activity|kynurenine hydroxylase activity Reactome:R-HSA-71200|RHEA:20545|MetaCyc:KYNURENINE-3-MONOOXYGENASE-RXN|KEGG_REACTION:R01960|EC:1.14.13.9 molecular_function owl:Class GO:0007192 biolink:NamedThing adenylate cyclase-activating serotonin receptor signaling pathway The series of molecular signals generated as a consequence of a serotonin receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP). tmpzr1t_l9r_go_relaxed.owl serotonin receptor, adenylyl cyclase activating pathway|activation of adenylate cyclase activity by serotonin receptor signalling pathway|serotonin receptor, adenylate cyclase activating pathway biological_process owl:Class GO:0000701 biolink:NamedThing purine-specific mismatch base pair DNA N-glycosylase activity Catalysis of the removal of purines present in mismatches, especially opposite oxidized purines, by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic (AP) site. tmpzr1t_l9r_go_relaxed.owl A/G-specific adenine DNA glycosylase activity EC:3.2.2.31 molecular_function owl:Class GO:0070033 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, and complexin II (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Vamp2-Snap25-Stx1a-Cplx2 complex|SNARE complex (Vamp2, Snap25, Stx1a, Cplx2) cellular_component owl:Class GO:0034577 biolink:NamedThing N-isopropylacetaniline monooxygenase activity Catalysis of the reaction: N-isopropylacetanilide + 1/2 O2 = acetanilide + acetone. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0914|EC:1.14.15.- molecular_function owl:Class GO:0102358 biolink:NamedThing daphnetin-8-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 7,8-dihydroxycoumarin <=> S-adenosyl-L-homocysteine + 7-hydroxy-8-methoxycoumarin + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13448 molecular_function owl:Class GO:0009905 biolink:NamedThing ent-copalyl diphosphate synthase activity Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = ent-copalyl diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-kaurene synthetase A activity|ent-copalyl-diphosphate lyase (decyclizing)|ent-kaurene synthase A activity|diterpene cyclase activity KEGG_REACTION:R02068|RHEA:14841|EC:5.5.1.13|MetaCyc:5.5.1.13-RXN molecular_function owl:Class GO:0045047 biolink:NamedThing protein targeting to ER The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane. tmpzr1t_l9r_go_relaxed.owl protein targeting to endoplasmic reticulum|protein-endoplasmic reticulum targeting|protein-ER targeting biological_process owl:Class GO:0009762 biolink:NamedThing NADP-malic enzyme C4 photosynthesis The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is NADP-malic enzyme. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-241 biological_process owl:Class GO:0102333 biolink:NamedThing stearoyl-[acp] elongase/decarboxylase activity Catalysis of the reaction: malonyl-CoA + 3 H+ + a stearoyl-[acp] = nonadec-1-ene + 2 carbon dioxide + coenzyme A + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13261 molecular_function owl:Class GO:0101029 biolink:NamedThing negative regulation of liquid surface tension Any process that prevents or reduces the surface tension of a liquid. tmpzr1t_l9r_go_relaxed.owl negative regulation of surface tension of a liquid biological_process owl:Class GO:0030907 biolink:NamedThing MBF transcription complex A protein complex that binds to the Mlu1 cell cycle box (MCB) promoter element, consensus sequence ACGCGN, and is involved in regulation of transcription during the G1/S transition of the cell cycle. In Saccharomyces, the complex contains a heterodimer of the DNA binding protein Mbp1p and the activator Swi6p, and is associated with additional proteins known as Nrm1p, Msa1p, and Msa2p; in Schizosaccharomyces the complex contains Res1p, Res2p, and Cdc10p. tmpzr1t_l9r_go_relaxed.owl Mlu1-box binding factor|DSC1 transcription factor complex|MBF cellular_component owl:Class GO:0031516 biolink:NamedThing far-red light photoreceptor activity The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 730nm. The response may involve a change in conformation. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018854 biolink:NamedThing 3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + ADP/AMP + mono/diphosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0737 molecular_function owl:Class GO:0103071 biolink:NamedThing 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA lyase activity Catalysis of the reaction: a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA <=> formyl-CoA + a 2-methyl branched 2,3,4-saturated fatty aldehyde. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN66-471 molecular_function owl:Class GO:0009027 biolink:NamedThing tartrate dehydrogenase activity Catalysis of the reaction: tartrate + NAD+ = oxaloglycolate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl tartrate:NAD+ oxidoreductase activity|mesotartrate dehydrogenase activity MetaCyc:TARTRATE-DEHYDROGENASE-RXN|EC:1.1.1.93|RHEA:15209 molecular_function owl:Class GO:0047399 biolink:NamedThing glucose-1-phospho-D-mannosylglycoprotein phosphodiesterase activity Catalysis of the reaction: H2O + 6-(D-glucose-1-phospho)-D-mannosylglycoprotein = D-mannosylglycoprotein + D-glucose-alpha-1-phosphate. tmpzr1t_l9r_go_relaxed.owl alpha-glucose-1-phosphate phosphodiesterase activity|6-(D-glucose-1-phospho)-D-mannosylglycoprotein glucose-1-phosphohydrolase activity MetaCyc:3.1.4.51-RXN|EC:3.1.4.51|RHEA:18045 molecular_function owl:Class GO:2001082 biolink:NamedThing inulin binding Binding to inulin. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-15T01:23:59Z molecular_function owl:Class GO:0035576 biolink:NamedThing retinoic acid receptor signaling pathway involved in pronephric field specification The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in regions of the embryo being delineated into the area in which the pronephric kidney will develop. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway involved in pronephric field specification bf 2010-10-05T01:19:35Z biological_process owl:Class GO:0014843 biolink:NamedThing growth factor dependent regulation of skeletal muscle satellite cell proliferation Any process that modulates the frequency, rate or extent of satellite cell proliferation; dependent on specific growth factor activity such as fibroblast growth factors and transforming growth factor beta. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097609 biolink:NamedThing longitudinal flagellum A motile cilium found in dinoflagellates. It trails the cell and acts as a steering rudder. It is often partially contained in a furrow called the sulcus, and emerges from a flagellar pore located in the sulcus. tmpzr1t_l9r_go_relaxed.owl longitudinal cilium Note that we deem cilium and microtubule-based flagellum to be equivalent. In this case community usage refers to 'flagellum' rather than 'cilium', hence the primary term name, but the cilium parentage is deliberate. pr 2014-06-09T11:21:10Z cellular_component owl:Class GO:0052917 biolink:NamedThing dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase Catalysis of the addition of mannose to dolichyl-pyrophosphate Man7GlcNAc2 (also written as Man7GlcNAc2-PP-Dol) in alpha-(1->6) linkage, producing Man8GlcNAc2-PP-Dol. tmpzr1t_l9r_go_relaxed.owl dolichyl-P-mannose:Man(7)GlcNAc(2)-PP-dolichyl mannosyltransferase activity|dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity|dolichyl-pyrophosphate Man7GlcNAc2 alpha-1,6-mannosyltransferase activity https://github.com/geneontology/go-ontology/issues/19075 EC:2.4.1.260|MetaCyc:RXN-5468|RHEA:29535|KEGG_REACTION:R06260 GO:0052824 molecular_function owl:Class GO:0035123 biolink:NamedThing embryonic dorsal fin morphogenesis The process, occurring in the embryo, by which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of a fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048014 biolink:NamedThing Tie signaling pathway The series of molecular signals generated as a consequence of a Tie protein (a receptor) binding to one of its physiological ligands (an angiopoietin). tmpzr1t_l9r_go_relaxed.owl Tek receptor signaling|Tie receptor signaling pathway|angiopoietin-Tie signaling pathway|Tie receptor signalling pathway|angiopoietin/Tie signaling pathway biological_process owl:Class GO:0070465 biolink:NamedThing alpha1-beta1 integrin-alpha3(VI) complex A protein complex that consists of an alpha1-beta1 integrin complex bound to a type VI collagen triple helix containing an alpha3(VI) chain. tmpzr1t_l9r_go_relaxed.owl ITGA1-ITGB1-COL6A3 complex cellular_component owl:Class GO:0102894 biolink:NamedThing UDPG:cyclo-DOPA 5-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + leucodopachrome <=> H+ + cyclo-dopa 5-O-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8481 molecular_function owl:Class GO:0055053 biolink:NamedThing mannose:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: mannose + H+ = mannose + H+. tmpzr1t_l9r_go_relaxed.owl mannose:hydrogen symporter activity molecular_function owl:Class GO:0052731 biolink:NamedThing phosphocholine phosphatase activity Catalysis of the reaction: choline phosphate + H2O = choline + phosphate. tmpzr1t_l9r_go_relaxed.owl PHOSPHO1|3X11A|phosphoethanolamine phosphohydrolase activity Reactome:R-HSA-1483159|KEGG_REACTION:R06871|MetaCyc:RXN-5647|RHEA:10492|EC:3.1.3.75 ai 2011-08-16T04:09:06Z molecular_function owl:Class GO:0019484 biolink:NamedThing beta-alanine catabolic process The chemical reactions and pathways resulting in the breakdown of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins. tmpzr1t_l9r_go_relaxed.owl beta-alanine breakdown|beta-alanine catabolism|beta-alanine degradation biological_process owl:Class GO:0035274 biolink:NamedThing diphenyl phthalate binding Binding to diphenyl phthalate, C(20)H(14)O(4). tmpzr1t_l9r_go_relaxed.owl DPP binding molecular_function owl:Class GO:0034630 biolink:NamedThing RITS complex localization Any process in which a RITS complex is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl RITS complex localisation|establishment and maintenance of RITS complex localization biological_process owl:Class GO:0098648 biolink:NamedThing collagen anchoring fibril A specialised collagen fibril that functions as an anchor, binding to other collagen structures. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031828 biolink:NamedThing type 2C serotonin receptor binding Binding to a type 2C serotonin receptor. tmpzr1t_l9r_go_relaxed.owl type 2C serotonin receptor ligand|5-hydroxytryptamine 2C receptor binding molecular_function owl:Class GO:0005597 biolink:NamedThing collagen type XVI trimer A collagen trimer containing alpha(XVI) chains; type XVI trimers can associate with microfibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0010526 biolink:NamedThing negative regulation of transposition, RNA-mediated Any process that decreases the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0099045 biolink:NamedThing viral extrusion The process whereby a filamentous phage particle is released from a bacterial host cell via a concerted mechanism of assembly and secretion. Neosynthesized virions are coordinately exported as they are assembled at the cell surface in a secretory process that leaves the host cell fully viable. Non-capsid proteins form structures that facilitate translocation through the inner membrane and outer membranes. A viral single-stranded DNA binding protein coats progeny viral DNA molecules to generate the intracellular precursor for assembly of phage particles as they are extruded through the membranes of the bacterial host. The structural proteins of the virus are anchored in the inner membrane before their incorporation into the phage particle. As assembly proceeds, the phage genome traverses the inner and outer membranes until the entire DNA molecule has been coated and extruded. tmpzr1t_l9r_go_relaxed.owl VZ:3951 biological_process owl:Class GO:0001531 biolink:NamedThing interleukin-21 receptor binding Binding to an interleukin-21 receptor. tmpzr1t_l9r_go_relaxed.owl IL-21|interleukin-21 receptor ligand molecular_function owl:Class GO:0070079 biolink:NamedThing histone H4-R3 demethylation The modification of histone H4 by the removal of a methyl group from arginine at position 3 of the histone. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018768 biolink:NamedThing 2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate + H2O = 2-aminobenzoate + cis-2-hydroxypenta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0458|EC:3.7.1.13 molecular_function owl:Class GO:0106034 biolink:NamedThing protein maturation by [2Fe-2S] cluster transfer The transfer of an assembled [2Fe-2S] cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-07T17:24:59Z biological_process owl:Class GO:1905040 biolink:NamedThing otic placode development The process whose specific outcome is the progression of an otic placode over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl octaval placode development|auditory placode development|ear placode development|placoda otica development|octaval VIII placode development|ear/otic placode development bf 2016-03-10T09:30:20Z biological_process owl:Class GO:0140413 biolink:NamedThing zinc:bicarbonate:selenite symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: zinc(out) + HCO3-(out) + HO3Se-(out) = zinc(in) + HCO3-(in) + HO3Se-(out). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18345 pg 2020-01-07T18:58:12Z molecular_function owl:Class GO:0106342 biolink:NamedThing omega-hydroxyceramide biosynthetic process The chemical reactions and pathways resulting in the formation of omega-hydroxyceramide/acylceramide. tmpzr1t_l9r_go_relaxed.owl hjd 2020-11-17T17:15:25Z biological_process owl:Class GO:0034236 biolink:NamedThing protein kinase A catalytic subunit binding Binding to one or both of the catalytic subunits of protein kinase A. tmpzr1t_l9r_go_relaxed.owl PKA catalytic subunit binding molecular_function owl:Class GO:0036359 biolink:NamedThing renal potassium excretion The elimination by an organism of potassium in the urine. tmpzr1t_l9r_go_relaxed.owl renal K(+) excretion|renal K+ elimination|renal potassium ion excretion bf 2012-09-20T11:10:47Z biological_process owl:Class GO:0014882 biolink:NamedThing regulation of myofibril number Any process that modulates the number of myofibrils. A myofibril is the contractile element of skeletal and cardiac muscle. It is a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. tmpzr1t_l9r_go_relaxed.owl change of myofibril number biological_process owl:Class GO:0032427 biolink:NamedThing GBD domain binding Binding to a GTPase protein binding domain (GDB) domain. The GBD is a short motif, including a minimum region of 16 amino acids, identified in proteins that bind to small GTPases such as Cdc42 and Rac. tmpzr1t_l9r_go_relaxed.owl Cdc42/Rac interactive binding motif binding|P21-Rho-binding domain binding|PMD binding|CRIB motif binding molecular_function owl:Class GO:0046816 biolink:NamedThing virion transport vesicle A vesicle used to transport the partial or complete virion between cellular compartments. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042187 biolink:NamedThing p-xylene catabolic process The chemical reactions and pathways resulting in the breakdown of p-xylene (1,4-dimethylbenzene), a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl p-xylene catabolism|para-xylene catabolism|p-xylene degradation|para-xylene catabolic process|p-xylene breakdown biological_process owl:Class GO:0018951 biolink:NamedThing p-xylene metabolic process The chemical reactions and pathways involving p-xylene, (1,4-dimethylbenzene) a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl para-xylene metabolism|p-xylene metabolism|para-xylene metabolic process UM-BBD_pathwayID:pxy biological_process owl:Class GO:0061033 biolink:NamedThing secretion by lung epithelial cell involved in lung growth The controlled release of liquid by a lung epithelial cell that contributes to an increase in size of the lung as part of its development. tmpzr1t_l9r_go_relaxed.owl fetal lung liquid secretion dph 2010-02-09T10:02:55Z biological_process owl:Class GO:1990145 biolink:NamedThing maintenance of translational fidelity Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template. tmpzr1t_l9r_go_relaxed.owl hjd 2013-07-24T19:30:09Z biological_process owl:Class GO:0045129 biolink:NamedThing NAD-independent histone deacetylase activity Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction does not require the presence of NAD, and represents the removal of an acetyl group from a histone. tmpzr1t_l9r_go_relaxed.owl AcuC molecular_function owl:Class GO:0070515 biolink:NamedThing alphaIIb-beta3 integrin-talin complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to talin. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-TLN1 complex cellular_component owl:Class GO:0042715 biolink:NamedThing dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome The aggregation, arrangement and bonding together of proteins on DNA to form the complex that mediates dosage compensation on both X chromosomes in the monogametic sex, ultimately resulting in a two-fold reduction in transcription from these chromosomes. An example of this process is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl dosage compensation complex assembly during dosage compensation by hypoactivation of X chromosome biological_process owl:Class GO:0061935 biolink:NamedThing fusion of sperm to egg plasma membrane involved in double fertilization forming two zygotes The binding and fusion of a sperm, with the plasma membrane of the oocyte as part of the process of double fertilization forming two zygotes. tmpzr1t_l9r_go_relaxed.owl dph 2017-09-05T18:38:08Z biological_process owl:Class GO:0033888 biolink:NamedThing chondro-6-sulfatase activity Catalysis of the reaction: 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine 6-sulfate + H(2)O = 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-6-sulfate 6-sulfohydrolase activity EC:3.1.6.10|KEGG_REACTION:R03518|MetaCyc:CHONDRO-6-SULFATASE-RXN|RHEA:10536 molecular_function owl:Class GO:0071153 biolink:NamedThing G-protein alpha(o)-synembrin complex A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(o) subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl Ric-8A G(o) alpha-1 subunit complex|Ric-8A G(o) alpha-2 subunit complex mah 2009-11-16T04:55:00Z cellular_component owl:Class GO:0033960 biolink:NamedThing N-methyl nucleosidase activity Catalysis of the reaction: 7-methylxanthosine + H(2)O = 7-methylxanthine + H(+) + ribofuranose. tmpzr1t_l9r_go_relaxed.owl N-methyl nucleoside hydrolase activity|methylpurine nucleosidase activity|7-methylxanthosine nucleosidase activity|N-MeNase activity|7-methylxanthosine ribohydrolase activity KEGG_REACTION:R07918|RHEA:10880|MetaCyc:RXN-7597|EC:3.2.2.25 molecular_function owl:Class GO:0047818 biolink:NamedThing D-fuconate dehydratase activity Catalysis of the reaction: D-fuconate = 2-dehydro-3-deoxy-D-fuconate + H(2)O. tmpzr1t_l9r_go_relaxed.owl D-fuconate hydro-lyase (2-dehydro-3-deoxy-D-fuconate-forming)|D-fuconate hydratase activity|D-fuconate hydro-lyase activity EC:4.2.1.67|MetaCyc:D-FUCONATE-HYDRATASE-RXN|KEGG_REACTION:R03671|RHEA:12949 molecular_function owl:Class GO:0033997 biolink:NamedThing inulin fructotransferase (DFA-I-forming) activity Catalysis of the reaction: [(2->1)-beta-D-fructosyl](n) = [(2->1)-beta-D-fructosyl](n-1) + alpha-D-fructofuranose-beta-D-fructofuranose 1,2':1,2'-dianhydride. This reaction is the production of alpha-D-fructofuranose beta-D-fructofuranose 1,2':2,1'-dianhydride (DFA I) by successively eliminating the diminishing (2->1)-beta-D-fructan (inulin) chain from the terminal D-fructosyl-D-fructosyl disaccharide. tmpzr1t_l9r_go_relaxed.owl inulin D-fructosyl-D-fructosyltransferase (1,2':1',2-dianhydride-forming) activity|inulin D-fructosyl-D-fructosyltransferase (forming alpha-D-fructofuranose beta-D-fructofuranose 1,2':1',2-dianhydride) activity|inulin fructotransferase (DFA-I-producing) activity|inulin fructotransferase (depolymerizing, difructofuranose-1,2':2',1-dianhydride-forming) activity|2,1-beta-D-fructan lyase (alpha-D-fructofuranose-beta-D-fructofuranose-1,2':2,1'-dianhydride-forming) activity EC:4.2.2.17|MetaCyc:4.2.2.17-RXN molecular_function owl:Class GO:0102213 biolink:NamedThing in-chain hydroxy fatty acyl-CoA synthetase activity Catalysis of the reaction: coenzyme A + ATP + an in-chain hydroxy fatty acid = diphosphoric acid + AMP + a in-chain hydroxyacyl-CoA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12184 molecular_function owl:Class GO:0050574 biolink:NamedThing 2-(R)-hydroxypropyl-CoM dehydrogenase activity Catalysis of the reaction: 2-(R)-hydroxypropyl-coenzyme M + NAD(+) = 2-oxopropyl-coenzyme M + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2-(2-(R)-hydroxypropylthio)ethanesulfonate dehydrogenase activity|2-[2-(R)-hydroxypropylthio]ethanesulfonate:NAD+ oxidoreductase activity RHEA:13249|EC:1.1.1.268|MetaCyc:1.1.1.268-RXN|UM-BBD_reactionID:r0852|KEGG_REACTION:R05689 molecular_function owl:Class GO:1901967 biolink:NamedThing negative regulation of cellular response to iron ion starvation Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to iron ion starvation. tmpzr1t_l9r_go_relaxed.owl down-regulation of cellular response to iron ion starvation|down regulation of cellular response to iron ion starvation|downregulation of cellular response to iron ion starvation|inhibition of cellular response to iron ion starvation al 2013-02-21T11:36:02Z biological_process owl:Class GO:0004092 biolink:NamedThing carnitine O-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + carnitine = (R)-O-acetylcarnitine + CoA. tmpzr1t_l9r_go_relaxed.owl carnitine O-acetyltransferase II activity|carnitine-acetyl-CoA transferase activity|CATC|carnitine acetyl coenzyme A transferase activity|acetyl-CoA:carnitine O-acetyltransferase activity|acetyl-CoA-carnitine O-acetyltransferase activity|acetylcarnitine transferase activity|carnitine O-acetyltransferase I activity|carnitine acetyltransferase activity|carnitine acetylase activity EC:2.3.1.7|Reactome:R-HSA-390291|Reactome:R-HSA-390284|RHEA:21136|KEGG_REACTION:R02396|MetaCyc:CARNITINE-O-ACETYLTRANSFERASE-RXN GO:0004093|GO:0004094 molecular_function owl:Class GO:0050376 biolink:NamedThing UDP-glucosamine 4-epimerase activity Catalysis of the reaction: UDP-glucosamine = UDP-galactosamine. tmpzr1t_l9r_go_relaxed.owl UDPglucosamine 4-epimerase activity|UDP-glucosamine epimerase activity EC:5.1.3.16|MetaCyc:UDP-GLUCOSAMINE-EPIMERASE-RXN|RHEA:23492 molecular_function owl:Class GO:0003111 biolink:NamedThing positive regulation of heart rate by circulating epinephrine The process in which the secretion of epinephrine into the bloodstream increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart rate by circulating adrenaline biological_process owl:Class GO:0047832 biolink:NamedThing D-pinitol dehydrogenase activity Catalysis of the reaction: 5D-5-O-methyl-chiro-inositol + NADP(+) = 2D-5-O-methyl-2,3,5/4,6-pentahydroxycyclohexanone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 5D-5-O-methyl-chiro-inositol:NADP+ oxidoreductase activity|1D-3-O-methyl-chiro-inositol:NADP+ oxidoreductase activity KEGG_REACTION:R03498|MetaCyc:D-PINITOL-DEHYDROGENASE-RXN|EC:1.1.1.142|RHEA:20437 molecular_function owl:Class GO:0019142 biolink:NamedThing 2-hydroxyglutarate synthase activity Catalysis of the reaction: glyoxylate + H(2)O + propanoyl-CoA = 2-hydroxyglutarate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl hydroxyglutarate synthase activity|propanoyl-CoA:glyoxylate C-propanoyltransferase (thioester-hydrolysing, 2-carboxyethyl-forming)|2-hydroxyglutarate glyoxylate-lyase (CoA-propanoylating) activity|2-hydroxyglutaric synthetase activity|2-hydroxyglutaratic synthetase activity|alpha-hydroxyglutarate synthase activity RHEA:19185|KEGG_REACTION:R00932|EC:2.3.3.11|MetaCyc:HYDGLUTSYN-RXN Note that this function was formerly EC:4.1.3.9. molecular_function owl:Class GO:0035409 biolink:NamedThing histone H3-Y41 phosphorylation The modification of histone H3 by the addition of a phosphate group to a tyrosine residue at position 41 of the histone. tmpzr1t_l9r_go_relaxed.owl bf 2010-03-24T10:13:13Z biological_process owl:Class GO:0031720 biolink:NamedThing haptoglobin binding Binding to a haptoglobin, any alpha2 globulin of blood plasma that can combine with free oxyhemoglobin to form a stable complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004134 biolink:NamedThing 4-alpha-glucanotransferase activity Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1->4)-alpha-D-glucan. tmpzr1t_l9r_go_relaxed.owl dextrin glycosyltransferase activity|D-enzyme activity|debranching enzyme maltodextrin glycosyltransferase activity|1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase activity|amylomaltase activity|disproportionating enzyme activity|oligo-1,4-1,4-glucantransferase activity|dextrin transglycosylase activity MetaCyc:AMYLOMALT-RXN|MetaCyc:RXN-9023|MetaCyc:RXN-1828|EC:2.4.1.25|Reactome:R-HSA-71552 molecular_function owl:Class GO:0102863 biolink:NamedThing 1-18:3-2-18:1-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-18:3-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:3-2-18:2-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8330 molecular_function owl:Class GO:0047783 biolink:NamedThing corticosterone 18-monooxygenase activity Catalysis of the reaction: corticosterone + reduced adrenal ferredoxin + O2 = 18-hydroxycorticosterone + oxidized adrenal ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl corticosterone methyl oxidase activity|corticosterone,reduced-adrenal-ferredoxin:oxygen oxidoreductase (18-hydroxylating)|corticosterone 18-hydroxylase activity EC:1.14.15.5|RHEA:11872|MetaCyc:CORTICOSTERONE-18-MONOOXYGENASE-RXN molecular_function owl:Class GO:0047547 biolink:NamedThing 2-methylcitrate dehydratase activity Catalysis of the reaction: (2S,3S)-2-methylcitrate = cis-2-methylaconitate + H(2)O. tmpzr1t_l9r_go_relaxed.owl (2S,3S)-2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]|prpD|2-methylcitrate hydro-lyase activity|2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase activity MetaCyc:2-METHYLCITRATE-DEHYDRATASE-RXN|KEGG_REACTION:R04424|EC:4.2.1.79|RHEA:17725 molecular_function owl:Class GO:0070976 biolink:NamedThing TIR domain binding Binding to a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. tmpzr1t_l9r_go_relaxed.owl Toll-Interleukin receptor domain binding mah 2009-10-02T01:17:29Z molecular_function owl:Class GO:0043720 biolink:NamedThing 3-keto-5-aminohexanoate cleavage activity Catalysis of the reaction: 3-keto-5-aminohexanoate + acetyl-CoA = L-3-aminobutyryl-CoA + acetoacetate. tmpzr1t_l9r_go_relaxed.owl 3-keto-5-aminohexanoate cleavage enzyme RHEA:31555|MetaCyc:R125-RXN molecular_function owl:Class GO:0034948 biolink:NamedThing 2,6-dihydroxypseudooxynicotine hydrolase activity Catalysis of the reaction: 2,6-dihydroxypseudooxynicotine + H2O = 2,6-dihydroxypyridine + 4-methylaminobutyrate. tmpzr1t_l9r_go_relaxed.owl EC:3.7.1.-|UM-BBD_reactionID:r0482 molecular_function owl:Class GO:0052674 biolink:NamedThing ent-pimara-9(11),15-diene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-pimara-9(11),15-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-copalyl-diphosphate diphosphate-lyase [ent-pimara-9(11),15-diene-forming] activity|PMD synthase activity MetaCyc:RXN-9299|EC:4.2.3.31|RHEA:25544 molecular_function owl:Class GO:0005127 biolink:NamedThing ciliary neurotrophic factor receptor binding Binding to a ciliary neurotrophic factor receptor. tmpzr1t_l9r_go_relaxed.owl ciliary neurotrophic factor receptor ligand|ciliary neurotrophic factor molecular_function owl:Class GO:0098603 biolink:NamedThing selenol Se-methyltransferase activity Catalysis of the reaction: R + Se-Adenosylselenomethionine => CH3-R + Se-Adenosyl-L-selenohomocysteine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408544 molecular_function owl:Class GO:0034548 biolink:NamedThing N-cyclopropylammeline deaminase activity Catalysis of the reaction: N-cyclopropylammeline + H2O = N-cyclopropylammelide + NH3. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8019|UM-BBD_reactionID:r0826 molecular_function owl:Class GO:0035328 biolink:NamedThing transcriptionally silent chromatin The ordered and organized complex of DNA and protein that forms regions of the chromosome that are not being actively transcribed. tmpzr1t_l9r_go_relaxed.owl transcriptionally inactive chromatin bf 2010-02-26T10:24:13Z cellular_component owl:Class GO:0047875 biolink:NamedThing ecdysone oxidase activity Catalysis of the reaction: Ecdysone + O(2) = 3-dehydroecdysone + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl ecdysone:oxygen 3-oxidoreductase activity|beta-ecdysone oxidase activity KEGG_REACTION:R02373|RHEA:11796|MetaCyc:ECDYSONE-OXIDASE-RXN|EC:1.1.3.16 molecular_function owl:Class GO:0004827 biolink:NamedThing proline-tRNA ligase activity Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). tmpzr1t_l9r_go_relaxed.owl prolyl-s-RNA synthetase activity|L-proline:tRNAPro ligase (AMP-forming)|prolyl-transfer ribonucleic acid synthetase activity|prolyl-transfer ribonucleate synthetase activity|prolyl-transferRNA synthetase activity|prolinyl-tRNA ligase activity|prolyl-tRNA synthetase activity|proline translase activity Reactome:R-HSA-379865|Reactome:R-HSA-380198|EC:6.1.1.15|MetaCyc:PROLINE--TRNA-LIGASE-RXN|RHEA:14305 molecular_function owl:Class GO:0004328 biolink:NamedThing formamidase activity Catalysis of the reaction: formamide + H(2)O = formate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl formamide hydrolase activity|formamide amidohydrolase activity UM-BBD_reactionID:r0873|EC:3.5.1.49|RHEA:21948|MetaCyc:FORMAMIDASE-RXN|KEGG_REACTION:R00524 GO:0034566 molecular_function owl:Class GO:0140693 biolink:NamedThing molecular condensate scaffold activity Binding and bringing together two or more macromolecules in contact, permitting those molecules to organize as a molecular condensate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21937 pg 2021-08-09T15:13:52Z molecular_function owl:Class GO:0062211 biolink:NamedThing root regeneration The the regeneration process by which a damaged or lost root regrows or re-differentiates. This process may occur via de-differentiation and subsequent reprogramming of somatic cells or activation of existing undifferentiated (meristematic) cells to form a new root meristem and subsequently new root. tmpzr1t_l9r_go_relaxed.owl dph 2020-02-21T12:47:41Z biological_process owl:Class GO:0110050 biolink:NamedThing deaminated glutathione amidase activity Catalysis of the reaction: N-(4-oxoglutarate)-L-cysteinylglycine + H(2)O = 2-oxoglutarate + L-cysteinylglycine. tmpzr1t_l9r_go_relaxed.owl N-(4-oxoglutarate)-L-cysteinylglycine = deaminated glutathione kmv 2017-08-31T19:19:11Z molecular_function owl:Class GO:0018796 biolink:NamedThing 4,5-dihydroxyphthalate decarboxylase activity Catalysis of the reaction: 4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO2. tmpzr1t_l9r_go_relaxed.owl 4,5-dihydroxyphthalate carboxy-lyase (3,4-dihydroxybenzoate-forming)|4,5-dihydroxyphthalate carboxy-lyase activity RHEA:24184|MetaCyc:45-DIHYDROXYPHTHALATE-DECARBOXYLASE-RXN|EC:4.1.1.55|UM-BBD_enzymeID:e0106 molecular_function owl:Class GO:0042131 biolink:NamedThing thiamine phosphate phosphatase activity Catalysis of the reaction: thiamine phosphate + H2O = thiamine + phosphate. tmpzr1t_l9r_go_relaxed.owl thiamin monophosphate phosphatase|thiamin phosphate phosphatase activity|ThMPase molecular_function owl:Class GO:1904065 biolink:NamedThing G protein-coupled acetylcholine receptor signaling pathway involved in positive regulation of acetylcholine secretion, neurotransmission Any G protein-coupled acetylcholine receptor signaling pathway that is involved in positive regulation of acetylcholine secretion, neurotransmission. tmpzr1t_l9r_go_relaxed.owl acetylcholine receptor signalling, muscarinic pathway involved in up regulation of acetylcholine secretion|G-protein coupled acetylcholine receptor signaling pathway involved in activation of acetylcholine secretion|G-protein coupled acetylcholine receptor signaling pathway involved in positive regulation of acetylcholine secretion, neurotransmission|muscarinic acetylcholine receptor signaling pathway involved in positive regulation of acetylcholine secretion, neurotransmission|G-protein coupled acetylcholine receptor signaling pathway involved in up regulation of acetylcholine secretion|acetylcholine receptor signalling, muscarinic pathway involved in upregulation of acetylcholine secretion|acetylcholine receptor signalling, muscarinic pathway involved in positive regulation of acetylcholine secretion, neurotransmission|G-protein coupled acetylcholine receptor signaling pathway involved in upregulation of acetylcholine secretion|G-protein coupled acetylcholine receptor signaling pathway involved in stimulation of acetylcholine secretion|muscarinic acetylcholine receptor signaling pathway involved in activation of acetylcholine secretion|muscarinic acetylcholine receptor signaling pathway involved in up regulation of acetylcholine secretion|acetylcholine receptor signalling, muscarinic pathway involved in activation of acetylcholine secretion|acetylcholine receptor signalling, muscarinic pathway involved in stimulation of acetylcholine secretion|acetylcholine receptor signalling, muscarinic pathway involved in up-regulation of acetylcholine secretion|muscarinic acetylcholine receptor signaling pathway involved in upregulation of acetylcholine secretion|muscarinic acetylcholine receptor signaling pathway involved in up-regulation of acetylcholine secretion|G-protein coupled acetylcholine receptor signaling pathway involved in up-regulation of acetylcholine secretion|muscarinic acetylcholine receptor signaling pathway involved in stimulation of acetylcholine secretion kmv 2015-03-19T15:28:47Z biological_process owl:Class GO:0018395 biolink:NamedThing peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine The hydroxylation of peptidyl-lysine to peptidyl-5-hydroxy-L-lysine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0028 biological_process owl:Class GO:0047206 biolink:NamedThing UDP-N-acetylmuramoylpentapeptide-lysine N6-alanyltransferase activity Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + L-alanyl-tRNA = UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-N6-(L-alanyl)-L-lysyl-D-alanyl-D-alanine + tRNA. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoacetylmuramoylpentapeptide lysine N(6)-alanyltransferase activity|L-alanyl-tRNA:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine 6-N-alanyltransferase activity|L-alanyl-tRNA:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine N6-alanyltransferase activity|alanyl-transfer ribonucleate-uridine diphosphoacetylmuramoylpentapeptide transferase activity|UDP-N-acetylmuramoylpentapeptide lysine N6-alanyltransferase activity|uridine diphosphoacetylmuramoylpentapeptide lysine N6-alanyltransferase activity|UDP-N-acetylmuramoylpentapeptide lysine N(6)-alanyltransferase activity MetaCyc:2.3.2.10-RXN|EC:2.3.2.10|RHEA:12432 molecular_function owl:Class GO:0047993 biolink:NamedThing hydroxymalonate dehydrogenase activity Catalysis of the reaction: hydroxymalonate + NAD(+) = H(+) + NADH + oxomalonate. tmpzr1t_l9r_go_relaxed.owl hydroxymalonate:NAD+ oxidoreductase activity EC:1.1.1.167|KEGG_REACTION:R02969|MetaCyc:HYDROXYMALONATE-DEHYDROGENASE-RXN|RHEA:11284 molecular_function owl:Class GO:0018791 biolink:NamedThing 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate decarboxylase activity Catalysis of the reaction: 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate = CO2 + 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0398 molecular_function owl:Class GO:0008961 biolink:NamedThing phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity Catalysis of the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the prospective N-terminal cysteine residue in an unmodified prolipoprotein. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.145|RHEA:56712 molecular_function owl:Class GO:0050345 biolink:NamedThing trans-epoxysuccinate hydrolase activity Catalysis of the reaction: trans-2,3-epoxysuccinate + H(2)O = (2R,3S)-tartrate. tmpzr1t_l9r_go_relaxed.owl trans-2,3-epoxysuccinate hydrolase activity|tartrate epoxydase activity|trans-epoxysuccinate hydratase activity KEGG_REACTION:R02547|MetaCyc:TRANS-EPOXYSUCCINATE-HYDROLASE-RXN|RHEA:20740|EC:3.3.2.4 molecular_function owl:Class GO:0002936 biolink:NamedThing bradykinin biosynthetic process The chemical reactions and pathways resulting in the formation of the peptide hormone bradykinin. tmpzr1t_l9r_go_relaxed.owl hjd 2012-10-17T14:24:24Z biological_process owl:Class GO:0071860 biolink:NamedThing proctolin receptor binding Binding to a proctolin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:24:19Z molecular_function owl:Class GO:0001604 biolink:NamedThing urotensin II receptor activity Combining with urotensin II to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0016277 biolink:NamedThing [myelin basic protein]-arginine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (myelin basic protein)-arginine = S-adenosyl-L-homocysteine + (myelin basic protein)-N(omega)-methyl-arginine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:myelin-basic-protein-arginine nomega-methyltransferase activity|myelin basic protein-arginine N-methyltransferase activity|myelin basic protein methylase activity|S-adenosyl-L-methionine:myelin-basic-protein-arginine omega-N-methyltransferase activity|myelin basic protein methylase I|protein methylase I activity molecular_function owl:Class GO:0048173 biolink:NamedThing positive regulation of short-term neuronal synaptic plasticity A process that increases short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity. tmpzr1t_l9r_go_relaxed.owl activation of short-term neuronal synaptic plasticity|up-regulation of short-term neuronal synaptic plasticity|up regulation of short-term neuronal synaptic plasticity|upregulation of short-term neuronal synaptic plasticity|stimulation of short-term neuronal synaptic plasticity Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0048172 biolink:NamedThing regulation of short-term neuronal synaptic plasticity A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity. tmpzr1t_l9r_go_relaxed.owl Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process. biological_process owl:Class GO:0140714 biolink:NamedThing large ribosomal subunit pre-assembly complex A protein complex that assists early maturation of nascent 60S ribosomal subunits. The complex interacts with the large ribosomal subunit rRNA via one of the components (Urb2 in S. cerevisiae) and requires a RNA helicase (Dbp6 in S. cerevisiae). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15279 pg 2021-09-15T12:17:56Z cellular_component owl:Class GO:0099573 biolink:NamedThing glutamatergic postsynaptic density The post-synaptic specialization of a glutamatergic excitatory synapse. tmpzr1t_l9r_go_relaxed.owl postsynaptic specialization, glutamatergic neuron-to-neuron synapse cellular_component owl:Class GO:0019948 biolink:NamedThing SUMO activating enzyme activity Catalysis of the activation of the proteolytically processed small ubiquitin-related modifier SUMO, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl SUMO E1 activator enzyme|SMT3 activating enzyme Reactome:R-HSA-2993784|Reactome:R-HSA-2993781|Reactome:R-HSA-2990833 GO:0017115 molecular_function owl:Class GO:0008489 biolink:NamedThing UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity Catalysis of the reaction: UDP-D-galactose + a glucosylceramide = a lactosylceramide + uridine-5'-diphosphate. The glucosylceramide has sphinganine as the long chain base. tmpzr1t_l9r_go_relaxed.owl lactosylceramide synthase activity|UDP-galactose glucosylceramide beta-1,4-galactosyltransferase activity|LacCer synthase activity MetaCyc:RXN-10764 molecular_function owl:Class GO:0120185 biolink:NamedThing MBF transcription complex assembly The aggregation, arrangement and bonding together of a set of components to form an MBF transcription complex. tmpzr1t_l9r_go_relaxed.owl Mlu1-box binding factor assembly|DSC1 transcription factor complex assembly|MBF complex assembly krc 2018-07-13T23:21:43Z biological_process owl:Class GO:0015048 biolink:NamedThing phthalate dioxygenase reductase activity Catalysis of the transfer of electrons between pyridine nucleotides (obligatory two-electron carriers) and hemes or (2Fe-2S) centers (obligatory one-electron carriers) in respiration, photosynthesis, and many oxygenase systems. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0061587 biolink:NamedThing transfer RNA gene-mediated silencing The chromatin silencing that results in the inhibition of RNA polymerase II-transcribed genes located in the vicinity of tRNA genes. tmpzr1t_l9r_go_relaxed.owl transfer RNA gene-mediated gene silencing|tgm silencing|tRNA gene-mediated gene silencing|transfer RNA gene-mediated chromatin silencing|tRNA gene-mediated chromatin silencing https://github.com/geneontology/go-ontology/issues/22060 dph 2014-02-05T09:03:59Z biological_process owl:Class GO:0034237 biolink:NamedThing protein kinase A regulatory subunit binding Binding to one or both of the regulatory subunits of protein kinase A. tmpzr1t_l9r_go_relaxed.owl protein kinase A anchoring activity|PKA regulatory subunit binding molecular_function owl:Class GO:0051432 biolink:NamedThing BH1 domain binding Binding to a BH1 protein domain, present in Bcl-2 family members. Proteins that act as inhibitors of apoptosis harbour at least three BH domains: BH1, BH2 and BH3; the BH1 and BH2 domains are found in all death antagonists of the Bcl-2 family but only in one class of death agonists. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050362 biolink:NamedThing L-tryptophan:2-oxoglutarate aminotransferase activity Catalysis of the reaction: L-tryptophan + 2-oxoglutarate = indolepyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl tryptophan aminotransferase activity|L-tryptophan aminotransferase activity|tryptophan transaminase activity|L-phenylalanine-2-oxoglutarate aminotransferase activity|L-tryptophan transaminase activity|hydroxytryptophan aminotransferase activity|5-hydroxytryptophan-ketoglutaric transaminase activity EC:2.6.1.27|RHEA:14093|MetaCyc:TRYPTOPHAN-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0015452 biolink:NamedThing methyl transfer-driven active transmembrane transporter activity Primary active transport of a solute across a membrane driven by a methyl transfer reaction. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source. tmpzr1t_l9r_go_relaxed.owl Methyltransfer-driven transporters TC:3.C molecular_function owl:Class GO:0018456 biolink:NamedThing aryl-alcohol dehydrogenase (NAD+) activity Catalysis of the reaction: an aromatic alcohol + NAD+ = an aromatic aldehyde + NADH + H+. tmpzr1t_l9r_go_relaxed.owl benzyl alcohol dehydrogenase activity|aryl-alcohol:NAD+ oxidoreductase activity|p-hydroxybenzyl alcohol dehydrogenase activity RHEA:12076|UM-BBD_enzymeID:e0019|EC:1.1.1.90|MetaCyc:ARYL-ALCOHOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0019196 biolink:NamedThing galactosamine transmembrane transporter activity Enables the transfer of galactosamine from one side of a membrane to the other. Galactosamine is an aminodeoxysugar; D-galactosamine is a constituent of some glycolipids and glycosaminoglycans, commonly as its N-acetyl derivative. tmpzr1t_l9r_go_relaxed.owl galactosamine porter activity GO:0019195 molecular_function owl:Class GO:0015153 biolink:NamedThing rhamnose transmembrane transporter activity Enables the transfer of rhamnose from one side of a membrane to the other. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled rhamnose transmembrane transporter activity|ATP-dependent rhamnose transmembrane transporter activity|rhamnose-transporting ATPase activity https://github.com/geneontology/go-ontology/issues/17289 RHEA:34995 GO:0033297 molecular_function owl:Class GO:0102768 biolink:NamedThing anthocyanidin synthase activity Catalysis of the reaction: flavan-3,3',4,4',5,5',7-heptol + O2 + 2-oxoglutarate = H+ + delphinidin + 2 H2O + carbon dioxide + succinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7785 molecular_function owl:Class GO:0047432 biolink:NamedThing 2,2-dialkylglycine decarboxylase (pyruvate) activity Catalysis of the reaction: 2,2-dialkylglycine + H(+) + pyruvate = L-alanine + CO(2) + dialkyl ketone. tmpzr1t_l9r_go_relaxed.owl dialkylamino-acid decarboxylase (pyruvate)|2,2-dialkylglycine carboxy-lyase (amino-transferring; L-alanine-forming)|dialkyl amino acid (pyruvate) decarboxylase activity|2,2-dialkyl-2-amino acid-pyruvate aminotransferase activity|alpha-dialkyl amino acid transaminase activity|L-alanine-alpha-ketobutyrate aminotransferase activity|2,2-dialkylglycine carboxy-lyase (amino-transferring) MetaCyc:4.1.1.64-RXN|KEGG_REACTION:R03854|RHEA:16073|EC:4.1.1.64 molecular_function owl:Class GO:0102080 biolink:NamedThing phenylacetyl-coenzyme A:glycine N-acyltransferase activity Catalysis of the reaction: phenylacetyl-CoA + glycine <=> H+ + phenylacetylglycine + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10821|RHEA:27850|EC:2.3.1.192 molecular_function owl:Class GO:0004578 biolink:NamedThing chitobiosyldiphosphodolichol beta-mannosyltransferase activity Catalysis of the reaction: GDP-mannose + chitobiosyldiphosphodolichol = GDP + beta-D-mannosylchitobiosyldiphosphodolichol. tmpzr1t_l9r_go_relaxed.owl GDP-mannose:chitobiosyldiphosphodolichol beta-D-mannosyltransferase activity|guanosine diphosphomannose-dolichol diphosphochitobiose mannosyltransferase activity|GDP-mannose-dolichol diphosphochitobiose mannosyltransferase activity EC:2.4.1.142|MetaCyc:2.4.1.142-RXN|RHEA:13865|Reactome:R-HSA-446218|Reactome:R-HSA-4549382 molecular_function owl:Class GO:0018607 biolink:NamedThing 1-indanone monooxygenase activity Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3,4-dihydrocoumarin. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0417|EC:1.14.12.- molecular_function owl:Class GO:0070499 biolink:NamedThing exosporium assembly A process that is carried out at the cellular level which results in the formation of an exosporium, the outermost layer of a bacterial endospore. tmpzr1t_l9r_go_relaxed.owl exosporium formation biological_process owl:Class GO:0035526 biolink:NamedThing retrograde transport, plasma membrane to Golgi The directed movement of substances from the plasma membrane back to the trans-Golgi network, mediated by vesicles. tmpzr1t_l9r_go_relaxed.owl bf 2010-05-05T10:52:49Z biological_process owl:Class GO:0050112 biolink:NamedThing inositol 2-dehydrogenase activity Catalysis of the reaction: myo-inositol + NAD(+) = 2,4,6/3,5-pentahydroxycyclohexanone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl inositol:NAD 2-dehydrogenase activity|myo-inositol 2-dehydrogenase activity KEGG_REACTION:R01183|EC:1.1.1.18|MetaCyc:MYO-INOSITOL-2-DEHYDROGENASE-RXN|RHEA:16949 molecular_function owl:Class GO:0044202 biolink:NamedThing host cell nuclear outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the host nuclear envelope; continuous with the endoplasmic reticulum of the host cell and sometimes studded with ribosomes. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T11:10:23Z cellular_component owl:Class GO:0106234 biolink:NamedThing outer membrane protein complex Any protein complex that is part of the bacterial outer membrane. An example In E.coli, is RcsF associated with any one of several outer membrane beta-barrel proteins (OMPs), such as OmpA, OmpF, or OmpcC. tmpzr1t_l9r_go_relaxed.owl hjd 2019-11-07T19:20:43Z cellular_component owl:Class GO:0018068 biolink:NamedThing peptidyl-L-2',4',5'-topaquinone biosynthetic process from peptidyl-tyrosine The modification of protein tyrosine to L-2',4',5'-topaquinone, characteristic of the active site of copper amine oxidases. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-2',4',5'-topaquinone anabolism from peptidyl-tyrosine|peptidyl-L-2',4',5'-topaquinone formation from peptidyl-tyrosine|peptidyl-L-2',4',5'-topaquinone synthesis from peptidyl-tyrosine RESID:AA0147 biological_process owl:Class GO:0071065 biolink:NamedThing alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-VCAM1 complex mah 2009-11-03T04:04:01Z cellular_component owl:Class GO:0033149 biolink:NamedThing FFAT motif binding Binding to a FFAT motif, a short motif containing diphenylalanine in an acidic tract that targets proteins to the cytosolic surface of the ER and to the nuclear membrane by binding directly to members of the VAP (VAMP-associated protein) protein family. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1903929 biolink:NamedThing primary palate development The process whose specific outcome is the progression of a primary palate over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl processus palatinus medianus development|primary palate process development|primitive palate development|palatum primarium development cls 2015-02-11T22:42:38Z biological_process owl:Class GO:0051265 biolink:NamedThing diolein transacylation activity Catalysis of the reaction: diolein + mono-olein = triolein + glycerol. Mono-olein, also known as mono-oleoylglycerol, is the monoglyceride formed from oleic acid, 9-octodecenoic acid; diolein is also known as dioleoylglycerol, and triolein as trioleoylglycerol and olein. tmpzr1t_l9r_go_relaxed.owl DOG transacylation|dioleoylglycerol transacylase activity|acyl-CoA-independent diolein transacylation|dioleoylglycerol O-acyltransferase activity molecular_function owl:Class GO:0018683 biolink:NamedThing camphor 5-monooxygenase activity Catalysis of the reaction: (+)-camphor + putidaredoxin + O2 = (+)-exo-5-hydroxycamphor + oxidized putidaredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl camphor hydroxylase activity|camphor 5-exohydroxylase activity|2-bornanone 5-exo-hydroxylase activity|D-camphor-exo-hydroxylase activity|cytochrome p450-cam activity|bornanone 5-exo-hydroxylase activity|d-camphor monooxygenase activity|camphor 5-exo-hydroxylase activity|camphor methylene hydroxylase activity|methylene hydroxylase activity|camphor 5-exo-methylene hydroxylase activity|methylene monooxygenase activity|(+)-camphor,reduced putidaredoxin:oxygen oxidoreductase (5-hydroxylating) MetaCyc:R541-RXN|UM-BBD_enzymeID:e0300|RHEA:13525|EC:1.14.15.1 molecular_function owl:Class GO:0097492 biolink:NamedThing sympathetic neuron axon guidance The chemotaxis process that directs the migration of a sympathetic neuron axon growth cone to a specific target site in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl sympathetic neuron axon chemotaxis|sympathetic neuron axon pathfinding|sympathetic neuron axon growth cone guidance pr 2013-07-10T11:50:52Z biological_process owl:Class GO:0001734 biolink:NamedThing mRNA (N6-adenosine)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + RRACH = S-adenosyl-L-homocysteine + RRm6ACH; R is a purine, and H is C, A, or U. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-72095 molecular_function owl:Class GO:0099128 biolink:NamedThing mitochondrial iron-sulfur cluster assembly complex A protein complex consisting of frataxin, cysteine desulfurase, an accessory protein and a Fe-S scaffold protein. In human these genes correspond to FXN, NFS1, ISD11 and ISCU respectively. This complex assembles Fe-S clusters onto the scaffolding protein using the substrates ferrous iron, electrons, and sulfur from l-cysteine. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098692 biolink:NamedThing noradrenergic synapse A synapse that uses noradrenaline as a neurotransmitter. tmpzr1t_l9r_go_relaxed.owl dos 2017-03-07T14:57:24Z cellular_component owl:Class GO:0015386 biolink:NamedThing potassium:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl potassium:hydrogen antiporter activity RHEA:29467 molecular_function owl:Class GO:0018038 biolink:NamedThing C-terminal peptidyl-cysteine amidation The formation of a C-terminal peptidyl-cysteine amide by hydrolysis and oxidation of an interior Cys-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0085 biological_process owl:Class GO:0102318 biolink:NamedThing 2-deoxystreptamine glucosyltransferase activity Catalysis of the reaction: 2-deoxystreptamine + UDP-alpha-D-glucose <=> 2'-deamino-2'-hydroxyparomamine + UDP(3-) + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.284|MetaCyc:RXN-13121|RHEA:34063 molecular_function owl:Class GO:0050699 biolink:NamedThing WW domain binding Binding to a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018532 biolink:NamedThing 5,10-methenyl-5,6,7,8-tetrahydromethanopterin dehydrogenase activity Catalysis of the reaction: N5,N10-methenyltetrahydromethanopterin + H2 = N5,N10-methylenetetrahydromethanopterin. tmpzr1t_l9r_go_relaxed.owl coenzyme F420-independent 5,10-methenyl-5,6,7,8-tetrahydromethanopterin dehydrogenase activity|F420-independent methylene-H4MPT dehydrogenase activity|coenzyme F420-independent methylene-H4MPT dehydrogenase activity|F420-independent 5,10-methenyl-5,6,7,8-tetrahydromethanopterin dehydrogenase activity EC:1.5.99.-|UM-BBD_reactionID:r0353 molecular_function owl:Class GO:0047667 biolink:NamedThing AMP-thymidine kinase activity Catalysis of the reaction: AMP + thymidine = adenosine + thymidine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl adenylate-nucleoside phosphotransferase activity|adenylic acid:deoxythymidine 5'-phosphotransferase activity|AMP:thymidine 5'-phosphotransferase activity|thymidine phosphotransferase activity|AMP:deoxythymidine kinase activity|AMP:dThd kinase activity|AMP:deoxythymidine 5'-phosphotransferase activity MetaCyc:AMP--THYMIDINE-KINASE-RXN|RHEA:14913|EC:2.7.1.114 molecular_function owl:Class GO:0047585 biolink:NamedThing 4-pyridoxolactonase activity Catalysis of the reaction: 4-pyridoxolactone + H(2)O = 4-pyridoxate + H(+). tmpzr1t_l9r_go_relaxed.owl 4-pyridoxolactone lactonohydrolase activity KEGG_REACTION:R02992|EC:3.1.1.27|RHEA:14301|MetaCyc:4-PYRIDOXOLACTONASE-RXN molecular_function owl:Class GO:0036202 biolink:NamedThing ent-cassa-12,15-diene 11-hydroxylase activity Catalysis of the reaction: ent-cassa-12,15-diene + O2 + NADPH + H+ = ent-11beta-hydroxycassa-12,15-diene + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl ent-cassadiene C11alpha-hydroxylase activity KEGG_REACTION:R09866|RHEA:31967|EC:1.14.14.112 bf 2012-04-20T02:34:13Z molecular_function owl:Class GO:0050210 biolink:NamedThing prenyl-diphosphatase activity Catalysis of the reaction: prenyl diphosphate + H2O = prenol + diphosphate. tmpzr1t_l9r_go_relaxed.owl prenyl-pyrophosphatase activity|prenyl-diphosphate diphosphohydrolase activity|prenol pyrophosphatase activity|prenylphosphatase activity EC:3.1.7.1|RHEA:21496|MetaCyc:PRENYL-PYROPHOSPHATASE-RXN molecular_function owl:Class GO:0042778 biolink:NamedThing tRNA end turnover The process in which the 3'-terminal CCA of a tRNA is removed and restored. This often happens to uncharged tRNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030351 biolink:NamedThing inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity Catalysis of the reaction: inositol-1,3,4,5,6-pentakisphosphate + H2O = inositol-1,4,5,6-tetrakisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1855163 molecular_function owl:Class GO:0030577 biolink:NamedThing Lands organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of Lands, a class of nuclear body that react against SP140 auto-antibodies. tmpzr1t_l9r_go_relaxed.owl Lands organisation|Lands organization and biogenesis|LYSP100-associated nuclear domain organization See also the cellular component term 'Lands ; GO:0016606'. biological_process owl:Class GO:0019821 biolink:NamedThing P3 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P3 peroxisomes are formed by fusion of P1 and P2 peroxisomes, and are distinguished from the other subforms on the bases of buoyant density and protein content. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P1 peroxisome ; GO:0019819', 'P2 peroxisome ; GO:0019820', 'P4 peroxisome ; GO:0019822', 'P5 peroxisome ; GO:0019823', and 'P6 peroxisome ; GO:0019824'. cellular_component owl:Class GO:0004764 biolink:NamedThing shikimate 3-dehydrogenase (NADP+) activity Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl shikimate:NADP(+) 5-oxidoreductase activity|DHS reductase activity|5-dehydroshikimic reductase activity|5-dehydroshikimate reductase activity|shikimate:NADP(+) oxidoreductase activity|dehydroshikimic reductase activity|shikimate oxidoreductase activity MetaCyc:SHIKIMATE-5-DEHYDROGENASE-RXN|KEGG_REACTION:R06847|EC:1.1.1.282|RHEA:17737|EC:1.1.1.25 molecular_function owl:Class GO:0018760 biolink:NamedThing thiocyanate hydrolase activity Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl thiocyanate aminohydrolase activity KEGG_REACTION:R05780|EC:3.5.5.8|MetaCyc:RXN-1761|RHEA:21464|UM-BBD_reactionID:r0598 molecular_function owl:Class GO:0033661 biolink:NamedThing effector-mediated defense to host-produced reactive oxygen species A process mediated by a molecule secreted by a symbiont that results in the suppression of reactive oxygen species produced by the host as part of its innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by organism of defense-related host active oxygen species production|down-regulation by organism of defense-related host oxidative burst|suppression by symbiont of defense-related host reactive oxygen species production|downregulation by organism of defense-related host AOS production|negative regulation by organism of defense-related host reactive oxygen intermediate production|negative regulation by organism of defense-related host reactive oxidative species production|negative regulation by organism of defense-related host respiratory burst|negative regulation by organism of defense-related host ROI production|down regulation by organism of defense-related host metabolic burst|negative regulation by symbiont of defense-related host reactive oxygen species production|negative regulation by organism of defense-related host ROS production https://github.com/geneontology/go-ontology/issues/18697 biological_process owl:Class GO:0043750 biolink:NamedThing phosphatidylinositol alpha-mannosyltransferase activity Catalysis of the transfer of one or more alpha-D-mannose residues from GDP-mannose to positions 2,6 and others in 1-phosphatidyl-myo-inositol. tmpzr1t_l9r_go_relaxed.owl phosphatidyl-myo-inositol alpha-mannosyltransferase activity|guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase activity|GDP mannose-phosphatidyl-myo-inositol alpha-mannosyltransferase activity|GDP mannose:1-phosphatidyl-myo-inositol alpha-D-mannosyltransferase activity|GDP-mannose:1-phosphatidyl-1D-myo-inositol alpha-D-mannosyltransferase activity|GDPmannose:1-phosphatidyl-myo-inositol alpha-D-mannosyltransferase activity RHEA:47368|EC:2.4.1.345|MetaCyc:2.4.1.57-RXN molecular_function owl:Class GO:0002502 biolink:NamedThing peptide antigen assembly with MHC class I protein complex The binding of a peptide to the antigen binding groove of an MHC class I protein complex. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0140566 biolink:NamedThing epigenetic reader A transcription regulator that recognizes epigenetic marks such as methylated cytosines in CpG islands and modified histones, and modulates the accessibility of cis-regulatory regions to the transcription machinery. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20551|https://github.com/geneontology/go-ontology/issues/22136 pg 2020-12-11T13:25:49Z molecular_function owl:Class GO:0033016 biolink:NamedThing rhoptry membrane The lipid bilayer surrounding a rhoptry. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0031583 biolink:NamedThing phospholipase D-activating G protein-coupled receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase D (PLD) and a subsequent increase in cellular levels of phosphatidic acid (PA). tmpzr1t_l9r_go_relaxed.owl phospholipase D-activating G-protein coupled receptor signaling pathway|activation of phospholipase D activity by G-protein coupled receptor protein signaling pathway|G-protein signalling, phospholipase D activating pathway This term is intended to cover steps in a GPCR signaling pathway both upstream and downstream of phospholipase D (PLD) activation. biological_process owl:Class GO:0008960 biolink:NamedThing phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity Catalysis of the reaction: phosphatidylglycerol + membrane-derived-oligosaccharide D-glucose = 1,2-diacyl-sn-glycerol + membrane-derived-oligosaccharide 6-(glycerophospho)-D-glucose. tmpzr1t_l9r_go_relaxed.owl phosphoglycerol transferase I|phosphatidylglycerol:membrane-derived-oligosaccharide-D-glucose glycerophosphotransferase activity|phosphoglycerol transferase activity|oligosaccharide glycerophosphotransferase activity MetaCyc:PGLYCEROLTRANSI-RXN|EC:2.7.8.20 molecular_function owl:Class GO:0032992 biolink:NamedThing protein-carbohydrate complex A macromolecular complex containing separate protein and carbohydrate molecules. Separate in this context means not covalently bound to each other. tmpzr1t_l9r_go_relaxed.owl Macromolecular complexes in which the carbohydrate component is all covalently bound to protein are not considered protein carbohydrate complexes. cellular_component owl:Class GO:0031216 biolink:NamedThing neopullulanase activity Catalysis of the hydrolysis of pullulan to panose (6-alpha-D-glucosylmaltose). tmpzr1t_l9r_go_relaxed.owl pullulanase II activity|pullulan 4-D-glucanohydrolase (panose-forming) EC:3.2.1.135|MetaCyc:3.2.1.135-RXN molecular_function owl:Class GO:0060598 biolink:NamedThing dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis The process in which the terminal end of a mammary duct bifurcates. tmpzr1t_l9r_go_relaxed.owl primary mammary duct branching dph 2009-05-13T12:16:29Z biological_process owl:Class GO:0046980 biolink:NamedThing tapasin binding Binding to tapasin, a member of the MHC class I loading complex which bridges the TAP peptide transporter to class I molecules. tmpzr1t_l9r_go_relaxed.owl TAPBP binding|TAP binding protein binding molecular_function owl:Class GO:0018666 biolink:NamedThing 2,4-dichlorophenol 6-monooxygenase activity Catalysis of the reaction: 2,4-dichlorophenol + NADPH + H+ + O2 = 3,5-dichlorocatechol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorophenol hydroxylase activity|2,4-dichlorophenol monooxygenase activity|2,4-dichlorophenol,NADPH:oxygen oxidoreductase (6-hydroxylating) RHEA:20920|EC:1.14.13.20|UM-BBD_enzymeID:e0152|MetaCyc:24-DICHLOROPHENOL-6-MONOOXYGENASE-RXN molecular_function owl:Class GO:0050043 biolink:NamedThing lactate racemase activity Catalysis of the reaction: (S)-lactate = (R)-lactate. tmpzr1t_l9r_go_relaxed.owl lacticoracemase activity|hydroxyacid racemase activity|lactic acid racemase activity EC:5.1.2.1|MetaCyc:LACTATE-RACEMASE-RXN|RHEA:10960|KEGG_REACTION:R01450 molecular_function owl:Class GO:0050288 biolink:NamedThing sorbose dehydrogenase activity Catalysis of the reaction: L-sorbose + A = 5-dehydro-D-fructose + AH(2). tmpzr1t_l9r_go_relaxed.owl L-sorbose:(acceptor) 5-oxidoreductase activity|L-sorbose:acceptor 5-oxidoreductase activity RHEA:14713|EC:1.1.99.12|KEGG_REACTION:R01696|MetaCyc:SORBOSE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0017129 biolink:NamedThing triglyceride binding Binding to a triester of glycerol. tmpzr1t_l9r_go_relaxed.owl triacylglycerol binding molecular_function owl:Class GO:0098568 biolink:NamedThing external side of mycolate outer membrane The side (leaflet) of the mycolate outer membrane that faces the environment and any proteins embedded in it or loosely bound to its surface. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0044100 biolink:NamedThing sporoplasm The complex infective apparatus corresponding to the central mass of cytoplasm within a spore that is injected into a host cell by various parasitic microorganisms. tmpzr1t_l9r_go_relaxed.owl jl 2009-06-09T03:27:03Z cellular_component owl:Class GO:0006149 biolink:NamedThing deoxyinosine catabolic process The chemical reactions and pathways resulting in the breakdown of deoxyinosine, hypoxanthine deoxyriboside. tmpzr1t_l9r_go_relaxed.owl deoxyinosine catabolism|deoxyinosine degradation|deoxyinosine breakdown biological_process owl:Class GO:0009030 biolink:NamedThing thiamine-phosphate kinase activity Catalysis of the reaction: ATP + thiamine phosphate = ADP + H(+) + thiamine diphosphate. tmpzr1t_l9r_go_relaxed.owl thiamin monophosphatase activity|ATP:thiamine-phosphate phosphotransferase activity|thiamin-monophosphate kinase activity|thiamin-phosphate kinase activity|thiamine-monophosphate kinase activity|thiamin monophosphokinase activity|thiamin phosphate kinase activity KEGG_REACTION:R00617|RHEA:15913|MetaCyc:THI-P-KIN-RXN|EC:2.7.4.16 molecular_function owl:Class GO:0097139 biolink:NamedThing BID-BCL-2 complex A heterodimeric protein complex consisting of BID and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:40:31Z cellular_component owl:Class GO:0034539 biolink:NamedThing 3,3',5,5'-tetrabromobisphenol A reductive dehalogenase activity Catalysis of the reaction: 3,3',5,5'-tetrabromobisphenol A + 2 H+ + 2 e- = 3,3',5-tribromobisphenol A + HBr. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0821 molecular_function owl:Class GO:1902351 biolink:NamedThing response to imidacloprid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an imidacloprid stimulus. tmpzr1t_l9r_go_relaxed.owl kmv 2013-08-13T19:33:15Z biological_process owl:Class GO:0042247 biolink:NamedThing establishment of planar polarity of follicular epithelium Coordinated organization of groups of cells in the plane of a follicular epithelium, such that they all orient to similar coordinates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097146 biolink:NamedThing NOXA-BCL-xl complex A heterodimeric protein complex consisting of NOXA and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:49:00Z cellular_component owl:Class GO:0030737 biolink:NamedThing iodophenol O-methyltransferase activity Catalysis of the reaction: 2-iodophenol + S-adenosyl-L-methionine = 1-iodo-2-methoxybenzene + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:2-iodophenol O-methyltransferase activity RHEA:14313|MetaCyc:IODOPHENOL-O-METHYLTRANSFERASE-RXN|EC:2.1.1.26|KEGG_REACTION:R03746 molecular_function owl:Class GO:0044847 biolink:NamedThing iron acquisition from host The process by which a symbiont acquires iron from its host, either from heme or other iron containing molecules such as transferrin and lactoferrin. Begins with either the secretion of symbiont gene products that bind iron- or heme-containing molecules (siderophores and hemophores) from the symbiont cell into the host, or by expression of receptors that bind iron- or heme-containing molecules on the symbiont cell surface. Ends when the iron-containing compound is transported into the symbiont cell. tmpzr1t_l9r_go_relaxed.owl iron acquisition|iron acquisition by symbiont from host heme|iron acquisition by symbiont from host|acquisition by symbiont of nutrients from host via siderophores|acquisition by organism of nutrients from host via siderophores|heme acquisition https://github.com/geneontology/go-ontology/issues/17896 jl 2014-05-13T13:40:59Z GO:0052099 biological_process owl:Class GO:1902482 biolink:NamedThing regulatory T cell apoptotic process Any apoptotic process in a regulatory T cell. tmpzr1t_l9r_go_relaxed.owl regulatory T lymphocyte apoptosis|regulatory T-cell apoptosis|regulatory T lymphocyte apoptotic process|regulatory T cell apoptosis|regulatory T-lymphocyte apoptotic process|regulatory T-cell apoptotic process|regulatory T-lymphocyte apoptosis nhn 2013-11-04T17:18:09Z biological_process owl:Class GO:0047287 biolink:NamedThing lactosylceramide alpha-2,6-N-sialyltransferase activity Catalysis of the reaction: cytolipin-H + CMP-N-acetylneuraminate = alpha-N-acetylneuraminyl-2,6-beta-galactosyl-1,4-beta-D-glucosylceramide + CMP. tmpzr1t_l9r_go_relaxed.owl CMP-sialic acid:lactosylceramide sialyltransferase activity|CMP-N-acetylneuraminic acid:lactosylceramide sialyltransferase activity|cytidine monophosphoacetylneuraminate-lactosylceramide sialyltransferase|CMP-acetylneuraminate-lactosylceramide-sialyltransferase|CMP-N-acetylneuraminate:lactosylceramide alpha-2,6-N-acetylneuraminyltransferase activity MetaCyc:2.4.99.11-RXN|EC:2.4.99.11|RHEA:21552 molecular_function owl:Class GO:0050408 biolink:NamedThing [pyruvate kinase]-phosphatase activity Catalysis of the reaction: [pyruvate kinase] phosphate + H2O = [pyruvate kinase] + phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:pyruvate 2-O-phosphotransferase-phosphate phosphohydrolase activity|pyruvate kinase phosphatase activity|pyruvate kinase-phosphatase activity EC:3.1.3.49|MetaCyc:PYRUVATE-KINASE-PHOSPHATASE-RXN molecular_function owl:Class GO:0047039 biolink:NamedThing tetrahydroxynaphthalene reductase activity Catalysis of the reaction: NADP+ + scytalone = NADPH + H+ + 1,3,6,8-naphthalenetetrol. tmpzr1t_l9r_go_relaxed.owl T4HN reductase activity|scytalone:NADP+ delta5-oxidoreductase activity RHEA:21908|EC:1.1.1.252|MetaCyc:1.1.1.252-RXN molecular_function owl:Class GO:0004320 biolink:NamedThing oleoyl-[acyl-carrier-protein] hydrolase activity Catalysis of the reaction: oleoyl-[acyl-carrier protein] + H2O = [acyl-carrier protein] + oleate. tmpzr1t_l9r_go_relaxed.owl oleoyl-acyl-carrier-protein hydrolase|oleoyl-ACP hydrolase activity|oleoyl-ACP thioesterase activity|oleoyl-[acyl-carrier protein] hydrolase activity|oleoyl-acyl carrier protein thioesterase activity MetaCyc:PWY-5142|MetaCyc:3.1.2.14-RXN|RHEA:15057|EC:3.1.2.14 molecular_function owl:Class GO:0043779 biolink:NamedThing cobalt-precorrin-5A acetaldehyde-lyase activity Catalysis of the reaction: cobalt-precorrin 5A + H2O = cobalt-precorrin 5B + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl cobalt-precorrin 5A acetaldehyde-lyase activity RHEA:26281|MetaCyc:RXN-8763 molecular_function owl:Class GO:0099526 biolink:NamedThing presynapse to nucleus signaling pathway A series of molecular signals that conveys information from the presynapse to the nucleus via cytoskeletal transport of a protein from a presynapse to the component to the nucleus where it affects biochemical processes that occur in the nucleus (e.g DNA transcription, mRNA splicing, or DNA/histone modifications). tmpzr1t_l9r_go_relaxed.owl presynaptic signaling to nucleus This class does not cover the cellular machinery (motor proteins, cargo-recognition proteins) that transports the signaling protein along the cytoskeleton towards the nucleus. For these cases, annotate to the appropriate transport/trafficking term. biological_process owl:Class GO:0052812 biolink:NamedThing phosphatidylinositol-3,4-bisphosphate 5-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP:1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 5-phosphotransferase activity EC:2.7.1.153|Reactome:R-HSA-1675773 ai 2011-10-21T03:52:02Z molecular_function owl:Class GO:0031807 biolink:NamedThing H1 histamine receptor binding Binding to a H1 histamine receptor. tmpzr1t_l9r_go_relaxed.owl H1 histamine receptor ligand molecular_function owl:Class GO:0072669 biolink:NamedThing tRNA-splicing ligase complex A protein complex that catalyzes the ligation of cleaved pre-tRNAs by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. tmpzr1t_l9r_go_relaxed.owl tRNA splicing ligase complex MetaCyc:ENTMULTI-CPLX mah 2011-02-18T10:55:26Z cellular_component owl:Class GO:0047245 biolink:NamedThing N-acetylglucosaminyldiphosphoundecaprenol glucosyltransferase activity Catalysis of the reaction: N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP-D-glucose = beta-D-glucosyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucose-acetylglucosaminylpyrophosphorylundecaprenol glucosyltransferase activity|UDPglucose:N-acetyl-D-glucosaminyldiphosphoundecaprenol 4-beta-D-glucosyltransferase activity|UDP-D-glucose:N-acetylglucosaminyl pyrophosphorylundecaprenol glucosyltransferase activity|UDP-glucose:N-acetyl-D-glucosaminyldiphosphoundecaprenol 4-beta-D-glucosyltransferase activity RHEA:20952|MetaCyc:2.4.1.188-RXN|EC:2.4.1.188 molecular_function owl:Class GO:0045340 biolink:NamedThing mercury ion binding Binding to a mercury ion (Hg). tmpzr1t_l9r_go_relaxed.owl mercury binding|Hg ion binding molecular_function owl:Class GO:0033736 biolink:NamedThing L-lysine 6-oxidase activity Catalysis of the reaction: L-lysine + H(2)O + O(2) = allysine + H(2)O(2) + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-lysine:oxygen 6-oxidoreductase (deaminating) activity|Lod|marinocine|L-lysine-epsilon-oxidase activity|LodA KEGG_REACTION:R07598|RHEA:22548|EC:1.4.3.20|MetaCyc:1.4.3.20-RXN molecular_function owl:Class GO:0097174 biolink:NamedThing 1,6-anhydro-N-acetyl-beta-muramic acid metabolic process The chemical reactions and pathways involving 1,6-anhydro-N-acetyl-beta-muramic acid, the 1,6-anhydro-derivative of N-acetyl-beta-muramic acid. tmpzr1t_l9r_go_relaxed.owl 1,6-anhydro-N-acetylmuramic acid metabolic process|1,6-anhydro-N-acetyl-beta-muramic acid metabolism|1,6-anhydro-N-acetyl-beta-muramate metabolism|1,6-anhydro-N-acetylmuramic acid metabolism|1,6-anhydro-N-acetyl-beta-muramate metabolic process pr 2011-10-07T12:54:36Z biological_process owl:Class GO:0047390 biolink:NamedThing glycerophosphocholine cholinephosphodiesterase activity Catalysis of the reaction: sn-glycero-3-phosphocholine + H(2)O = choline phosphate + glycerol + H(+). tmpzr1t_l9r_go_relaxed.owl sn-glycero-3-phosphocholine cholinephosphohydrolase activity|L-3-glycerylphosphinicocholine cholinephosphohydrolase activity EC:3.1.4.38|KEGG_REACTION:R02591|Reactome:R-HSA-6814797|RHEA:19545|MetaCyc:3.1.4.38-RXN molecular_function owl:Class GO:0051365 biolink:NamedThing cellular response to potassium ion starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. tmpzr1t_l9r_go_relaxed.owl cellular response to potassium ion deprivation|cellular response to K+ ion deprivation|cellular response to K+ ion starvation|cellular response to potassium starvation biological_process owl:Class GO:0003908 biolink:NamedThing methylated-DNA-[protein]-cysteine S-methyltransferase activity Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl 6-O-methylguanine-DNA methyltransferase activity|O6-alkylguanine-DNA alkyltransferase|MGMT|DNA-6-O-methylguanine:[protein]-L-cysteine S-methyltransferase activity|DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase activity|O-6-methylguanine-DNA-alkyltransferase activity|methylated-DNA-protein-cysteine S-methyltransferase activity Reactome:R-HSA-73892|EC:2.1.1.63|MetaCyc:2.1.1.63-RXN|RHEA:24000 molecular_function owl:Class GO:0018059 biolink:NamedThing N-terminal peptidyl-serine deamination The oxidative deamination of N-terminal peptidyl-serine to form pyruvic acid with an amide bond between its 1-carboxyl group and the N-terminal residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0048038 biolink:NamedThing quinone binding Binding to a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102130 biolink:NamedThing malonyl-CoA methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + a malonyl-[acp] = S-adenosyl-L-homocysteine + a malonyl-[acp] methyl ester. tmpzr1t_l9r_go_relaxed.owl RHEA:17105|MetaCyc:RXN-11475|EC:2.1.1.197 molecular_function owl:Class GO:0035005 biolink:NamedThing 1-phosphatidylinositol-4-phosphate 3-kinase activity Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl C2-domain-containing phosphoinositide 3-kinase activity|phosphatidylinositol 3-kinase activity, class II|ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 3-phosphotransferase activity|phosphatidylinositol 3-kinase activity, class I|type II phosphoinositide 3-kinase activity|phosphatidylinositol-4-phosphate 3-kinase activity|phosphatidylinositol 3-kinase, class I, catalyst activity Reactome:R-HSA-1675928|KEGG_REACTION:R05795|Reactome:R-HSA-8868072|EC:2.7.1.154|Reactome:R-HSA-1676206|RHEA:18373|MetaCyc:2.7.1.154-RXN|Reactome:R-HSA-1676109 molecular_function owl:Class GO:0047658 biolink:NamedThing alpha-amino-acid esterase activity Catalysis of the reaction: an alpha-amino acid ester + H2O = an alpha-amino acid + an alcohol. tmpzr1t_l9r_go_relaxed.owl a-amino-acid esterase activity|alpha-amino-acid ester hydrolase activity|alpha-amino-acid-ester aminoacylhydrolase activity|alpha-amino acid ester hydrolase activity Reactome:R-HSA-6784959|RHEA:17241|EC:3.1.1.43|MetaCyc:ALPHA-AMINO-ACID-ESTERASE-RXN molecular_function owl:Class GO:0051850 biolink:NamedThing acquisition of nutrients from symbiont The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070742 biolink:NamedThing C2H2 zinc finger domain binding Binding to a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-23T11:26:02Z molecular_function owl:Class GO:0033051 biolink:NamedThing aminophosphonate metabolic process The chemical reactions and pathways involving aminophosphonates, phosphonic acid derivatives that contain an amino group. tmpzr1t_l9r_go_relaxed.owl aminophosphonate metabolism KEGG_PATHWAY:map00440 biological_process owl:Class GO:0061304 biolink:NamedThing retinal blood vessel morphogenesis The process whose specific outcome is the progression of a blood vessel of the retina over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-16T09:02:59Z biological_process owl:Class GO:1905238 biolink:NamedThing cellular response to cyclosporin A Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclosporin A stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to cyclophilin sl 2016-06-07T21:32:14Z biological_process owl:Class GO:0032598 biolink:NamedThing B cell receptor transport into immunological synapse The directed movement of a B cell receptor into an immunological synapse. tmpzr1t_l9r_go_relaxed.owl BCR transport into immunological synapse|BCR translocation into immunological synapse|B cell receptor translocation into immunological synapse biological_process owl:Class GO:0106309 biolink:NamedThing progesterone 21-hydroxylase activity Catalysis of the reaction: O2 + progesterone + reduced [NADPH--hemoprotein reductase] = 21-hydroxyprogesterone + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:50304 hjd 2020-09-21T14:40:30Z molecular_function owl:Class GO:0052430 biolink:NamedThing modulation by host of symbiont RNA levels The alteration by an organism of the levels of RNA in a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0062245 biolink:NamedThing double membrane vesicle viral factory inner membrane The inner of the two endoplasmic reticulum-derived lipid bilayer membranes that bound a double membrane vesicle viral factory. tmpzr1t_l9r_go_relaxed.owl inner membrane of double membrane vesicle viral factory dph 2020-04-20T20:55:49Z cellular_component owl:Class GO:0080048 biolink:NamedThing GDP-D-glucose phosphorylase activity Catalysis of the reaction: GDP-D-glucose + phosphate = D-glucose-1-P + GDP. tmpzr1t_l9r_go_relaxed.owl RHEA:30387|EC:2.7.7.78|MetaCyc:RXN-12486 molecular_function owl:Class GO:0071080 biolink:NamedThing alpha3-beta1 integrin-basigin complex A protein complex that consists of an alpha3-beta1 integrin complex bound to the cell surface protein basigin. tmpzr1t_l9r_go_relaxed.owl ITGA3-ITGB1-BSG complex mah 2009-11-06T04:43:26Z cellular_component owl:Class GO:1990313 biolink:NamedThing type-III cohesin domain binding Binding to a type-III cohesin domain of a protein. Type-III cohesin domain is the binding partner of type-III dockerin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T04:58:07Z molecular_function owl:Class GO:0042988 biolink:NamedThing X11-like protein binding Binding to X11-like protein, a neuron-specific adaptor protein. tmpzr1t_l9r_go_relaxed.owl X11L binding molecular_function owl:Class GO:0062144 biolink:NamedThing L-propargylglycine synthase activity Catalysis of the reaction: L-2-amino-4-chloropent-4-enoate = chloride + H(+) + L-propargylglycine. tmpzr1t_l9r_go_relaxed.owl RHEA:59892 dph 2019-09-02T16:48:52Z molecular_function owl:Class GO:0030015 biolink:NamedThing CCR4-NOT core complex The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003735 biolink:NamedThing structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome. tmpzr1t_l9r_go_relaxed.owl ribosomal RNA|ribosomal protein Note that this term may be used to annotate ribosomal RNAs as well as ribosomal proteins. GO:0003741|GO:0003736|GO:0003739|GO:0003738|GO:0003742|GO:0003737|GO:0003740 molecular_function owl:Class GO:0017005 biolink:NamedThing 3'-tyrosyl-DNA phosphodiesterase activity Catalysis of the hydrolysis of 3'-phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between DNA topoisomerase I and DNA. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'DNA topoisomerase type I activity ; GO:0003917'. molecular_function owl:Class GO:0061521 biolink:NamedThing hepatic stellate cell differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a hepatic stellate cell. tmpzr1t_l9r_go_relaxed.owl dph 2013-04-18T13:36:08Z biological_process owl:Class GO:0016767 biolink:NamedThing geranylgeranyl-diphosphate geranylgeranyltransferase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate. tmpzr1t_l9r_go_relaxed.owl geranylgeranyl-diphosphate:geranylgeranyl-diphosphate geranylgeranyltransferase activity|prephytoene-diphosphate synthase activity|phytoene synthetase activity|PSase activity MetaCyc:2.5.1.32-RXN|EC:2.5.1.32|RHEA:22296 molecular_function owl:Class GO:0140438 biolink:NamedThing protein stearoylation The covalent attachment of a stearoyl group to an amino acid in a protein. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18882 pg 2020-03-11T07:54:48Z biological_process owl:Class GO:1990208 biolink:NamedThing positive regulation by symbiont of RNA levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the RNA levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-08T13:31:41Z biological_process owl:Class GO:0046771 biolink:NamedThing viral budding from inner nuclear membrane The envelopment of a virus, in which the nucleocapsid evaginates from the host inner nuclear membrane system into the perinuclear space, thus acquiring a membrane envelope. tmpzr1t_l9r_go_relaxed.owl virus budding from inner nuclear membrane by viral capsid envelopment|inner nuclear membrane viral budding during viral capsid envelopment|viral budding from inner nuclear membrane during viral capsid envelopment|viral budding from inner nuclear membrane by viral capsid envelopment|virus budding from inner nuclear membrane during viral capsid envelopment https://github.com/geneontology/go-ontology/issues/20782 biological_process owl:Class GO:0047335 biolink:NamedThing 3-phosphoglyceroyl-phosphate-polyphosphate phosphotransferase activity Catalysis of the reaction: long-chain-polyphosphate + 3-phospho-D-glyceroyl-phosphate = long-chain-polyphosphate + 3-phosphoglycerate. tmpzr1t_l9r_go_relaxed.owl 1,3-diphosphoglycerate-polyphosphate phosphotransferase activity|diphosphoglycerate-polyphosphate phosphotransferase activity|3-phospho-D-glyceroyl-phosphate:polyphosphate phosphotransferase activity EC:2.7.4.17|RHEA:18665|MetaCyc:2.7.4.17-RXN molecular_function owl:Class GO:0015475 biolink:NamedThing adhesin autotransporter activity Enables the transfer of adhesin from the periplasm to the external milieu; the adhesin and the porin are the N- and C-terminal regions of the same protein, respectively. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990478 biolink:NamedThing response to ultrasound Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultrasonic stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2014-09-09T22:11:32Z biological_process owl:Class GO:0055089 biolink:NamedThing fatty acid homeostasis Any process involved in the maintenance of an internal steady state of fatty acid within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102654 biolink:NamedThing 1-18:1-2-16:0-phosphatidylglycerol trans-3 desaturase activity Catalysis of the reaction: 1-[(9Z)-octadec-9-enoyl]-2-hexadecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-) + O2 + a reduced electron acceptor <=> 1-18:1-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl EC:1.14.19.43|MetaCyc:RXN-1725|RHEA:46764 molecular_function owl:Class GO:0006678 biolink:NamedThing glucosylceramide metabolic process The chemical reactions and pathways involving glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. They are neutral glycolipids containing equimolar amounts of fatty acid, glucose, and sphingosine or a sphingosine derivative. tmpzr1t_l9r_go_relaxed.owl glucosylceramide metabolism biological_process owl:Class GO:0010136 biolink:NamedThing ureide catabolic process The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. tmpzr1t_l9r_go_relaxed.owl ureide breakdown|ureide degradation|ureide catabolism MetaCyc:URDEGR-PWY biological_process owl:Class GO:0102163 biolink:NamedThing 3-hydroxyacyl-CoA-acyl carrier protein transferase activity Catalysis of the reaction: coenzyme A + a (3R)-3-hydroxyacyl-[acyl-carrier protein] = a (3R)-3-hydroxyacyl-CoA + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11785 molecular_function owl:Class GO:0032190 biolink:NamedThing acrosin binding Binding to acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities. tmpzr1t_l9r_go_relaxed.owl acrosin light chain binding|acrosin heavy chain binding GO:0032192|GO:0032191 molecular_function owl:Class GO:0120239 biolink:NamedThing vascular endothelial glycocalyx The carbohydrate-rich layer lining the vascular endothelium connected to the endothelium through a variety of molecules, mainly proteoglycans and glycoproteins. These form a network in which soluble molecules, either plasma- or endothelium-derived, are incorporated. tmpzr1t_l9r_go_relaxed.owl endothelial glycocalyx https://github.com/geneontology/go-ontology/issues/19782 krc 2020-07-27T21:55:41Z cellular_component owl:Class GO:0098017 biolink:NamedThing viral capsid, major subunit The part of the viral capsid that comprises the most common capsomere type. For example, in a T=3 icosahedral capsid, which is composed of 12 pentameric and 20 hexameric capsomeres, the hexameric capsomeres are major subunits. tmpzr1t_l9r_go_relaxed.owl major head protein|major capsomere bm 2012-07-19T11:21:21Z cellular_component owl:Class GO:0036448 biolink:NamedThing cellular response to glucose-phosphate stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the accumulation of glucose-phosphate. tmpzr1t_l9r_go_relaxed.owl bf 2013-10-31T11:20:08Z biological_process owl:Class GO:0033354 biolink:NamedThing chlorophyll cycle A cyclic series of interconversions involving chlorophyll a, chlorophyll b and several chlorophyllide intermediates. tmpzr1t_l9r_go_relaxed.owl MetaCyc:PWY-5068 biological_process owl:Class GO:0019451 biolink:NamedThing L-cysteine catabolic process to pyruvate, using cysteine dioxygenase The chemical reactions and pathways resulting in the breakdown into pyruvate of L-cystine, catalyzed by the enzyme cysteine dioxygenase (EC:1.13.11.20). tmpzr1t_l9r_go_relaxed.owl L-cysteine degradation to pyruvate, using cysteine dioxygenase|L-cysteine breakdown to pyruvate, using cysteine dioxygenase MetaCyc:CYSTEINE-DEG-PWY biological_process owl:Class GO:0044519 biolink:NamedThing envenomation resulting in modulation of vasoactive intestinal polypeptide receptor activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of the activity of a vasoactive intestinal polypeptide receptor in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in regulation of VIP receptor activity in other organism|envenomation resulting in modulation of VIP receptor activity in other organism|envenomation resulting in regulation of vasoactive intestinal polypeptide receptor activity in other organism jl 2012-02-26T11:53:33Z biological_process owl:Class GO:0033142 biolink:NamedThing progesterone receptor binding Binding to a progesterone receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030767 biolink:NamedThing 3-hydroxyanthranilate 4-C-methyltransferase activity Catalysis of the reaction: 3-hydroxyanthranilate + S-adenosyl-L-methionine = 3-hydroxy-4-methylanthranilate + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:3-hydroxyanthranilate 4-C-methyltransferase activity|3-hydroxyanthranilate 4-methyltransferase activity RHEA:17833|MetaCyc:2.1.1.97-RXN|KEGG_REACTION:R02667|EC:2.1.1.97 molecular_function owl:Class GO:0035512 biolink:NamedThing hydrolytic DNA demethylation The hydrolytic removal of the methyl group from one or more nucleotides within a DNA molecule. tmpzr1t_l9r_go_relaxed.owl bf 2010-04-30T02:24:21Z biological_process owl:Class GO:0043897 biolink:NamedThing glucan 1,4-alpha-maltohydrolase activity Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl maltogenic alpha-amylase activity|1,4-alpha-D-glucan alpha-maltohydrolase activity|glucan-1,4-alpha-maltohydrolase activity MetaCyc:3.2.1.133-RXN|EC:3.2.1.133 molecular_function owl:Class GO:0102670 biolink:NamedThing 2,7,4'-trihydroxyisoflavanone-4'-O-methyltransferase activity Catalysis of the reaction: 2,4',7-trihydroxyisoflavanone + S-adenosyl-L-methionine <=> H+ + 2,7-dihydroxy-4'-methoxyisoflavanone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-3624|RHEA:31371|EC:2.1.1.212 molecular_function owl:Class GO:0047080 biolink:NamedThing deoxyuridine 2'-dioxygenase activity Catalysis of the reaction: 2'-deoxyuridine + 2-oxoglutarate + O(2) = CO(2) + succinate + uridine. tmpzr1t_l9r_go_relaxed.owl thymidine 2-oxoglutarate dioxygenase activity|thymidine 2'-dioxygenase activity|thymidine dioxygenase activity|thymidine 2'-hydroxylase activity|pyrimidine-deoxynucleoside 2'-dioxygenase activity|2'-deoxyuridine,2-oxoglutarate:oxygen oxidoreductase (2'-hydroxylating)|deoxyuridine 2'-hydroxylase activity|pyrimidine-deoxynucleoside,2-oxoglutarate 2'-dioxygenase activity|pyrimidine deoxyribonucleoside 2'-hydroxylase activity KEGG_REACTION:R01879|MetaCyc:1.14.11.3-RXN|RHEA:21076|EC:1.14.11.3 molecular_function owl:Class GO:0070763 biolink:NamedThing Delta1 complex A protein complex that consists of homodimer of the Notch ligand Delta1. tmpzr1t_l9r_go_relaxed.owl Delta1 homodimer complex mah 2009-06-29T01:04:12Z cellular_component owl:Class GO:0103046 biolink:NamedThing alanylglutamate dipeptidase activity Catalysis of the reaction: L-alanyl-L-glutamate + H2O <=> L-alanine + L-glutamate. tmpzr1t_l9r_go_relaxed.owl EC:3.4.13.18|MetaCyc:RXN0-6981 molecular_function owl:Class GO:0106312 biolink:NamedThing methylenetetrahydrofolate reductase NADH activity Catalysis of the reaction: 5-methyltetrahydrofolate + NAD + = 5,10-methylenetetrahydrofolate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:19821 hjd 2020-09-23T14:20:07Z molecular_function owl:Class GO:0032920 biolink:NamedThing putrescine acetylation The modification of putrescine by addition of acetyl groups. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031688 biolink:NamedThing A2B adenosine receptor binding Binding to an A2B adenosine receptor. tmpzr1t_l9r_go_relaxed.owl A2B adenosine receptor ligand molecular_function owl:Class GO:0102053 biolink:NamedThing (-)-jasmonoyl-isoleucine synthetase activity Catalysis of the reaction: (-)-jasmonate + L-isoleucine + ATP(4-) <=> H+ + (-)-jasmonoyl-L-isoleucine + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10435 molecular_function owl:Class GO:0034421 biolink:NamedThing post-translational protein acetylation The addition of an acetyl group to one or more amino acids in a protein, occurring after the protein has been completely translated and released from the ribosome. tmpzr1t_l9r_go_relaxed.owl post-translational protein amino acid acetylation|posttranslational protein amino acid acetylation biological_process owl:Class GO:0004040 biolink:NamedThing amidase activity Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3. tmpzr1t_l9r_go_relaxed.owl N-acetylaminohydrolase activity|acylamidase activity|acylase activity|fatty acylamidase activity|amidohydrolase activity|acylamide amidohydrolase activity|acetamidase activity UM-BBD_enzymeID:e0068|RHEA:12020|EC:3.5.1.4|MetaCyc:AMIDASE-RXN molecular_function owl:Class GO:0032699 biolink:NamedThing negative regulation of interleukin-16 production Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-16 production. tmpzr1t_l9r_go_relaxed.owl down regulation of interleukin-16 production|downregulation of interleukin-16 production|down-regulation of interleukin-16 production|inhibition of interleukin-16 production|negative regulation of IL-16 production|negative regulation of interleukin-16 biosynthetic process GO:0045376 biological_process owl:Class GO:0031874 biolink:NamedThing type 3 proteinase activated receptor binding Binding to a type 3 proteinase activated receptor. tmpzr1t_l9r_go_relaxed.owl type 3 proteinase activated receptor ligand molecular_function owl:Class GO:0052880 biolink:NamedThing oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces a copper protein. tmpzr1t_l9r_go_relaxed.owl EC:1.10.9.- molecular_function owl:Class GO:0034084 biolink:NamedThing steryl deacetylase activity Catalysis of the hydrolysis of an acetyl group or groups from an acetylated sterol. tmpzr1t_l9r_go_relaxed.owl sterol deacetylase activity molecular_function owl:Class GO:0004059 biolink:NamedThing aralkylamine N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + an aralkylamine = CoA + an N-acetylaralkylamine. tmpzr1t_l9r_go_relaxed.owl melatonin rhythm enzyme activity|serotonin acetylase activity|serotonin N-acetyltransferase activity|AANAT activity|serotonin acetyltransferase activity|arylalkylamine N-acetyltransferase activity|acetyl-CoA:2-arylethylamine N-acetyltransferase activity EC:2.3.1.87|MetaCyc:ARALKYLAMINE-N-ACETYLTRANSFERASE-RXN|Reactome:R-HSA-209792|RHEA:20497 molecular_function owl:Class GO:0016524 biolink:NamedThing latrotoxin receptor activity Combining with alpha-latrotoxin, a potent presynaptic neurotoxin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl latrophilin molecular_function owl:Class GO:0061711 biolink:NamedThing N(6)-L-threonylcarbamoyladenine synthase activity Catalysis of the reaction: L-threonylcarbamoyladenylate + adenine(37) in tRNA = AMP + N(6)-L-threonylcarbamoyladenine(37) in tRNA. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6784494|EC:2.3.1.234|MetaCyc:RXN-14570|RHEA:37059 dph 2015-06-23T08:34:44Z molecular_function owl:Class GO:0033773 biolink:NamedThing isoflavone 2'-hydroxylase activity Catalysis of the reaction: an isoflavone + O2 + reduced [NADPH-hemoprotein reductase] = a 2'-hydroxyisoflavone + H+ + H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl CYP81E1|isoflavone 2'-monooxygenase activity|CYP Ge-3 https://github.com/geneontology/go-ontology/issues/21412 RHEA:18849|MetaCyc:ISOFLAVONE-2-HYDROXYLASE-RXN|EC:1.14.14.90 Formerly EC:1.14.13.89. molecular_function owl:Class GO:0034848 biolink:NamedThing naphthyl-2-oxomethyl-succinyl-CoA succinyl transferase activity Catalysis of the reaction: naphthyl-2-oxomethyl-succinyl-CoA + CoASH = 2-naphthoyl-CoA + succinyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1261 molecular_function owl:Class GO:0008429 biolink:NamedThing phosphatidylethanolamine binding Binding to a phosphatidylethanolamine, a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042751 biolink:NamedThing estivation Any process in which an organism enters and maintains a period of dormancy, similar to hibernation, but that occurs during the summer. It insulates against heat to prevent the harmful effects of the season. tmpzr1t_l9r_go_relaxed.owl aestivation Wikipedia:Estivation biological_process owl:Class GO:0061100 biolink:NamedThing lung neuroendocrine cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a neuroendocrine cell of the lung epithelium. tmpzr1t_l9r_go_relaxed.owl dph 2010-04-27T03:28:46Z biological_process owl:Class GO:0090499 biolink:NamedThing pimelyl-[acyl-carrier protein] methyl ester esterase activity Catalysis of the reaction: pimelyl-[acyl-carrier protein] methyl ester + H2O = pimelyl-[acyl-carrier protein] + methanol. tmpzr1t_l9r_go_relaxed.owl pimelyl-[acyl-carrier protein] methyl ester hydrolase activity Note that while this reaction occurs on a modified protein (acyl-carrier protein), the ACP only acts as a carrier that later releases the end product. tb 2012-10-19T12:10:01Z molecular_function owl:Class GO:1902928 biolink:NamedThing inulin biosynthetic process The chemical reactions and pathways resulting in the formation of inulin. tmpzr1t_l9r_go_relaxed.owl inulin formation|inulin synthesis|inulin anabolism|inulin biosynthesis SUC2 in S. cerevisiae strain JZ1C in PMID:23104410. se 2014-04-21T23:54:51Z biological_process owl:Class GO:0033988 biolink:NamedThing bile-acid 7alpha-dehydratase activity Catalysis of the reaction: 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oate = 12alpha-hydroxy-3-oxochola-4,6-dien-24-oate + H(2)O. tmpzr1t_l9r_go_relaxed.owl 7alpha,12alpha-dihydroxy-3-oxochol-4-enoate hydro-lyase activity|7alpha,12alpha-dihydroxy-3-oxochol-4-enoate hydro-lyase (12alpha-hydroxy-3-oxochola-4,6-dienoate-forming) activity|BA7 alpha dehydratase activity RHEA:10436|EC:4.2.1.106|MetaCyc:4.2.1.106-RXN|KEGG_REACTION:R07318 molecular_function owl:Class GO:1990444 biolink:NamedThing F-box domain binding Binding to an F-box domain of a protein. tmpzr1t_l9r_go_relaxed.owl bf 2014-08-05T13:45:14Z molecular_function owl:Class GO:0072653 biolink:NamedThing interferon-omega production The appearance of interferon-omega due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-omega production|IFNW production|interferon-omega secretion Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072654 biological_process owl:Class GO:0060060 biolink:NamedThing post-embryonic retina morphogenesis in camera-type eye The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043959 biolink:NamedThing L-erythro-3-methylmalyl-CoA lyase activity Catalysis of the reaction: propionyl-CoA + glyoxylate = L-erythro-3-methylmalyl-CoA. tmpzr1t_l9r_go_relaxed.owl HpcH/HpaI aldolase EC:4.1.3.24 molecular_function owl:Class GO:0015473 biolink:NamedThing fimbrial usher porin activity A porin that acts in the assembly of fimbria together with fimbrial chaperone. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005292 biolink:NamedThing high-affinity lysine transmembrane transporter activity Enables the transfer of lysine from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity lysine transporter activity|high affinity lysine transmembrane transporter activity molecular_function owl:Class GO:0033190 biolink:NamedThing solanapyrone synthase activity Catalysis of the cyclization of double bonds in prosolanapyrone II to form (-)-solanapyrone A. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0042259 biolink:NamedThing peptidyl-L-beta-methylthioasparagine biosynthetic process from peptidyl-asparagine The modification of peptidyl-asparagine to form peptidyl-L-beta-methylthioasparagine, typical of bacterial ribosomal protein S12. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-beta-methylthioasparagine anabolism from peptidyl-asparagine|peptidyl-L-beta-methylthioasparagine synthesis from peptidyl-asparagine|peptidyl-L-beta-methylthioasparagine formation from peptidyl-asparagine RESID:AA0320 biological_process owl:Class GO:0018067 biolink:NamedThing peptidyl-L-3',4'-dihydroxyphenylalanine biosynthetic process from peptidyl-tyrosine The modification of protein tyrosine to peptidyl-L-3',4'-dihydroxyphenylalanine (DOPA). tmpzr1t_l9r_go_relaxed.owl peptidyl-L-3',4'-dihydroxyphenylalanine formation from peptidyl-tyrosine|peptidyl-L-3',4'-dihydroxyphenylalanine anabolism from peptidyl-tyrosine|peptidyl-L-3',4'-dihydroxyphenylalanine synthesis from peptidyl-tyrosine RESID:AA0146 biological_process owl:Class GO:0051118 biolink:NamedThing glucan endo-1,3-alpha-glucosidase activity Catalysis of the endohydrolysis of (1->3)-alpha-D-glucosidic linkages in isolichenin, pseudonigeran and nigeran. tmpzr1t_l9r_go_relaxed.owl endo-(1->3)-alpha-glucanase activity|endo-1,3-alpha-glucanase activity|cariogenase activity|1,3(1,3;1,4)-alpha-D-glucan 3-glucanohydrolase activity|endo-1,3-alpha-D-glucanase activity|cariogenanase activity|mutanase activity MetaCyc:3.2.1.59-RXN|EC:3.2.1.59 molecular_function owl:Class GO:0031875 biolink:NamedThing type 4 proteinase activated receptor binding Binding to a type 4 proteinase activated receptor. tmpzr1t_l9r_go_relaxed.owl type 4 proteinase activated receptor ligand molecular_function owl:Class GO:0047822 biolink:NamedThing hypotaurine dehydrogenase activity Catalysis of the reaction: H(2)O + hypotaurine + NAD(+) = H(+) + NADH + taurine. tmpzr1t_l9r_go_relaxed.owl hypotaurine:NAD+ oxidoreductase activity MetaCyc:HYPOTAURINE-DEHYDROGENASE-RXN|RHEA:17385|Reactome:R-HSA-1655453|EC:1.8.1.3|KEGG_REACTION:R01681 molecular_function owl:Class GO:0033064 biolink:NamedThing XRCC2-RAD51D complex A heterodimeric DNA recombinase mediator complex that contains the Rad51 paralogs RAD51D and XRCC2, or orthologs thereof; conserved from fission yeast to human but absent from budding yeast. tmpzr1t_l9r_go_relaxed.owl DX2 complex cellular_component owl:Class GO:0090117 biolink:NamedThing endosome to lysosome transport of low-density lipoprotein particle The directed movement of low-density lipoprotein particle from endosomes to lysosomes. tmpzr1t_l9r_go_relaxed.owl endosome to lysosome transport of LDL tb 2009-12-07T12:04:34Z biological_process owl:Class GO:0046806 biolink:NamedThing viral scaffold A complex of proteins that form a scaffold around which the viral capsid is constructed. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0021629 biolink:NamedThing olfactory nerve structural organization The process that contributes to the act of creating the structural organization of the oculomotor nerve. This process pertains to the physical shaping of a rudimentary structure. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem. tmpzr1t_l9r_go_relaxed.owl olfactory nerve structural organisation|CN I structural organization biological_process owl:Class GO:0006539 biolink:NamedThing glutamate catabolic process via 2-oxoglutarate The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl glutamate catabolic process via 2-ketoglutarate|glutamate degradation via 2-oxoglutarate|glutamate catabolism via alpha-oxoglutarate|glutamate breakdown via 2-oxoglutarate|glutamate catabolism via 2-ketoglutarate|glutamate catabolism via alpha-ketoglutarate|glutamate catabolic process via alpha-ketoglutarate|glutamate catabolic process via alpha-oxoglutarate MetaCyc:P162-PWY biological_process owl:Class GO:0015957 biolink:NamedThing bis(5'-nucleosidyl) oligophosphate biosynthetic process The chemical reactions and pathways resulting in the formation of a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules. tmpzr1t_l9r_go_relaxed.owl bis(5'-nucleosidyl) oligophosphate synthesis|bis(5'-nucleosidyl) oligophosphate biosynthesis|bis(5'-nucleosidyl) oligophosphate anabolism|bis(5'-nucleosidyl) oligophosphate formation biological_process owl:Class GO:0004061 biolink:NamedThing arylformamidase activity Catalysis of the reaction: N-formyl-L-kynurenine + H2O = formate + L-kynurenine. tmpzr1t_l9r_go_relaxed.owl formylkynurenine formamidase activity|formylase activity|kynurenine formamidase activity|formamidase I|formylkynureninase activity|aryl-formylamine amidohydrolase activity|formamidase II MetaCyc:ARYLFORMAMIDASE-RXN|RHEA:13009|EC:3.5.1.9|Reactome:R-HSA-71189 molecular_function owl:Class GO:0018978 biolink:NamedThing anaerobic 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolic process The chemical reactions and pathways involving 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT), a chlorinated, broad spectrum, contact insecticide, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic DDT metabolic process|anaerobic DDT metabolism|anaerobic 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism UM-BBD_pathwayID:ddt2 biological_process owl:Class GO:1990593 biolink:NamedThing nascent polypeptide-associated complex binding Binding to nascent polypeptide-associated complex, a heterodimeric protein complex that can reversibly bind to ribosomes and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. tmpzr1t_l9r_go_relaxed.owl NAC binding|NACA binding mcc 2014-12-15T22:20:45Z molecular_function owl:Class GO:0047015 biolink:NamedThing 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity Catalysis of the reaction: NAD+ + 2-methyl-3-hydroxybutyryl-CoA = NADH + H+ + 2-methylaceto-acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-methyl-3-hydroxy-butyryl CoA dehydrogenase activity|2-methyl-3-hydroxybutyryl coenzyme A dehydrogenase activity|2-methyl-3-hydroxybutyryl-CoA dehydrogenase activity|(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA:NAD+ oxidoreductase activity RHEA:13281|EC:1.1.1.178|MetaCyc:1.1.1.178-RXN molecular_function owl:Class GO:0070505 biolink:NamedThing pollen coat A layer of extracellular matrix deposited onto the surface of the pollen wall upon disintegration of the tapetal layer of the anther wall in the late stages of pollen development. The composition of this material is highly heterogeneous and includes waxes, lipid droplets, small aromatic molecules, and proteins. The pollen coat is proposed to have many functions, such as holding pollen in the anther until dispersal, facilitation of pollen dispersal, protection of pollen from water loss and UV radiation, and facilitation of adhesion of pollen to the stigma. tmpzr1t_l9r_go_relaxed.owl pollenkitt|tryphine cellular_component owl:Class GO:0033394 biolink:NamedThing beta-alanine biosynthetic process via 1,3 diaminopropane The chemical reactions and pathways resulting in the formation of beta-alanine via the intermediate 1,3 diaminopropane. tmpzr1t_l9r_go_relaxed.owl beta-alanine formation via 1,3 diaminopropane|beta-alanine anabolism via 1,3 diaminopropane|beta-alanine synthesis via 1,3 diaminopropane|beta-alanine biosynthesis via 1,3 diaminopropane MetaCyc:PWY-3981 biological_process owl:Class GO:0018852 biolink:NamedThing dichloromuconate cycloisomerase activity Catalysis of the reaction: 2,4-dichloro-2,5-dihydro-5-oxofuran-2-acetate = 2,4-dichloro-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl 2,4-dichloro-2,5-dihydro-5-oxofuran-2-acetate lyase (decyclizing) EC:5.5.1.11|UM-BBD_reactionID:r0277|RHEA:17437|MetaCyc:DICHLOROMUCONATE-CYCLOISOMERASE-RXN molecular_function owl:Class GO:0102846 biolink:NamedThing 1-18:3-2-16:1-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:3-2-16:1-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8308 molecular_function owl:Class GO:0031891 biolink:NamedThing type 1 vasoactive intestinal polypeptide receptor binding Binding to a type 1 vasoactive intestinal polypeptide receptor. tmpzr1t_l9r_go_relaxed.owl type 2 PACAP receptor binding|type 1 vasoactive intestinal polypeptide receptor ligand molecular_function owl:Class GO:0031890 biolink:NamedThing vasoactive intestinal polypeptide receptor binding Binding to a vasoactive intestinal polypeptide receptor. tmpzr1t_l9r_go_relaxed.owl VIP receptor binding|vasoactive intestinal polypeptide receptor ligand molecular_function owl:Class GO:0020033 biolink:NamedThing antigenic variation Any process involved in the biological strategy of changing antigenic determinants on the surface that are exposed to another organism's immune system. tmpzr1t_l9r_go_relaxed.owl surface antigen variation https://github.com/geneontology/go-ontology/issues/18357 Wikipedia:Antigenic_variation GO:0020034 biological_process owl:Class GO:0022017 biolink:NamedThing neuroblast division in pallium The division of neuroblasts in the pallium. Neuroblasts are precursor cells that give rise to neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050281 biolink:NamedThing serine-glyoxylate transaminase activity Catalysis of the reaction: L-serine + glyoxylate = 3-hydroxypyruvate + glycine. tmpzr1t_l9r_go_relaxed.owl L-serine:glyoxylate aminotransferase activity|SGAT activity|serine--glyoxylate aminotransferase activity RHEA:19125|MetaCyc:SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|EC:2.6.1.45 molecular_function owl:Class GO:0043863 biolink:NamedThing 4-hydroxy-2-ketopimelate aldolase activity Catalysis of the reaction: 4-hydroxy-2-ketopimelate = succinate semialdehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl HpaI|HHED aldolase activity|HpcH|2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase activity RHEA:25788|MetaCyc:4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN molecular_function owl:Class GO:1990019 biolink:NamedThing protein storage vacuole organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a protein storage vacuole, a storage vacuole that contains a lytic vacuole. tmpzr1t_l9r_go_relaxed.owl tb 2012-12-20T21:00:09Z biological_process owl:Class GO:0047521 biolink:NamedThing 3alpha,7alpha,12beta-trihydroxy-5beta-cholanate dehydrogenase activity Catalysis of the reaction: 3alpha,7alpha,12beta-trihydroxy-5beta-cholanate + NADP(+) = 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl 12beta-hydroxysteroid dehydrogenase activity|12beta-hydroxysteroid:NADP+ 12-oxidoreductase activity|12beta-hydroxy steroid (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|12-beta-hydroxysteroid dehydrogenase activity EC:1.1.1.238|MetaCyc:12-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN|RHEA:21424|KEGG_REACTION:R03495 molecular_function owl:Class GO:1990453 biolink:NamedThing nucleosome disassembly/reassembly complex A protein complex involved in the disassembly and subsequent reassembly of nucleosomes. It associates with the coding region of transcriptionally active genes where it interacts with the RNA polymerase II and affects its processivity during co-transcriptional RNA processing and maturation. It exists as a functionally independent part of the NuA4 complex. tmpzr1t_l9r_go_relaxed.owl eaf5/7/3 complex An example of this is EAF7 in Saccharomyces cerevisiae (P53911) in PMID:24843044 (inferred from direct assay). bhm 2014-08-08T15:18:30Z cellular_component owl:Class GO:0106366 biolink:NamedThing guanosine kinase activity Catalysis of the reaction: ATP + guanosine = ADP + GMP. tmpzr1t_l9r_go_relaxed.owl RHEA:27710|EC:2.7.1.73 hjd 2021-02-23T21:18:12Z molecular_function owl:Class GO:0008977 biolink:NamedThing prephenate dehydrogenase (NAD+) activity Catalysis of the reaction: NAD(+) + prephenate = (4-hydroxyphenyl)pyruvate + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl chorismate mutase--prephenate dehydrogenase activity|hydroxyphenylpyruvate synthase activity|prephenate:NAD+ oxidoreductase (decarboxylating) KEGG_REACTION:R01728|EC:1.3.1.12|RHEA:13869|MetaCyc:PREPHENATEDEHYDROG-RXN molecular_function owl:Class GO:0034907 biolink:NamedThing acetanilide 1,2-dioxygenase activity Catalysis of the reaction: acetanilide + O2 + 2 H+ + NADH = catechol + NAD+ + acetamide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0723 molecular_function owl:Class GO:0042344 biolink:NamedThing indole glucosinolate catabolic process The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. tmpzr1t_l9r_go_relaxed.owl indole glucosinolate degradation|indole glucosinolate breakdown|indole glucosinolate catabolism biological_process owl:Class GO:0035553 biolink:NamedThing oxidative single-stranded RNA demethylation Removal of the methyl group from one or more nucleotides within a single-stranded RNA molecule involving the oxidation (i.e. electron loss) of one or more atoms. tmpzr1t_l9r_go_relaxed.owl oxidative ssRNA demethylation bf 2010-05-14T11:05:17Z biological_process owl:Class GO:0030750 biolink:NamedThing putrescine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + putrescine = N-methylputrescine + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:putrescine N-methyltransferase activity|putrescine methyltransferase activity KEGG_REACTION:R01153|RHEA:15037|EC:2.1.1.53|MetaCyc:PUTRESCINE-N-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0052694 biolink:NamedThing jasmonoyl-isoleucine-12-hydroxylase activity Catalysis of the reaction: jasmonoyl-isoleucine + NADPH + H+ + O2 = 12-hydroxy-jasmonoyl-isoleucine + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:54808|MetaCyc:RXN-12421 molecular_function owl:Class GO:0102643 biolink:NamedThing scalarane-17alpha-19-diol synthase activity Catalysis of the reaction: scalarane-17alpha-19-diol <=> all-trans-geranylfarnesol + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15755 molecular_function owl:Class GO:0010242 biolink:NamedThing oxygen evolving activity Catalysis of the reaction: 2 H2O = O2 + 4 H+ + 4 e-. The evolution of oxygen from oxidizing water is carried out by the oxygen evolving complex in photosystem II of plants. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle. tmpzr1t_l9r_go_relaxed.owl photosynthetic water oxidation EC:1.10.3.9|MetaCyc:RXN0-5265|MetaCyc:PSII-RXN|RHEA:36359 molecular_function owl:Class GO:1990414 biolink:NamedThing replication-born double-strand break repair via sister chromatid exchange The repair of a replication-born double-strand DNA break in which the DNA molecule is repaired using the homologous sequence of the sister chromatid which serves as a template to repair the breaks. tmpzr1t_l9r_go_relaxed.owl replication-born DSB repair by SCE rb 2014-07-10T21:20:34Z biological_process owl:Class GO:0019128 biolink:NamedThing peptidyl-tryptophan racemization The racemization of peptidyl-tryptophan. tmpzr1t_l9r_go_relaxed.owl RESID:AA0198 GO:0018374|GO:0018092 biological_process owl:Class GO:1990796 biolink:NamedThing photoreceptor cell terminal bouton A specialized region of the axon terminus portion of a photoreceptor cell axon. A photoreceptor cell is a neuron specialized to detect and transduce light. tmpzr1t_l9r_go_relaxed.owl sl 2015-07-09T21:33:40Z cellular_component owl:Class GO:0033456 biolink:NamedThing GCG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GCG codon. tmpzr1t_l9r_go_relaxed.owl alanine tRNA Note that in the standard genetic code, GCG codes for alanine. molecular_function owl:Class GO:0047422 biolink:NamedThing N-acyl-D-aspartate deacylase activity Catalysis of the reaction: N-acyl-D-aspartate + H(2)O = D-aspartate + a carboxylate. tmpzr1t_l9r_go_relaxed.owl N-acyl-D-aspartate amidohydrolase activity MetaCyc:3.5.1.83-RXN|RHEA:18285|KEGG_REACTION:R02182|EC:3.5.1.83 molecular_function owl:Class GO:0043571 biolink:NamedThing maintenance of CRISPR repeat elements Any process involved in sustaining CRISPR repeat clusters, including capture of new spacer elements, expansion or contraction of clusters, propagation of the leader sequence and repeat clusters within a genome, transfer of repeat clusters and CRISPR-associated (cas) genes to new genomes, transcription of the CRISPR repeat arrays into RNA and processing, and interaction of CRISPR/cas loci with the host genome. CRISPR (clustered regularly interspaced short palindromic repeat) elements are a family of sequence elements containing multiple direct repeats of 24-48 bp with weak dyad symmetry which are separated by regularly sized nonrepetitive spacer sequences. tmpzr1t_l9r_go_relaxed.owl CRISPR element metabolism|maintenance of clustered regularly interspaced short palindromic repeat elements|CRISPR element metabolic process biological_process owl:Class GO:0034714 biolink:NamedThing type III transforming growth factor beta receptor binding Binding to a type III transforming growth factor beta receptor. tmpzr1t_l9r_go_relaxed.owl TGF-beta type III binding|betaglycan binding|transforming growth factor beta receptor type III binding|transforming growth factor beta ligand binding to type III receptor|type IIII TGF-beta binding molecular_function owl:Class GO:0047836 biolink:NamedThing D-tryptophan N-malonyltransferase activity Catalysis of the reaction: D-tryptophan + malonyl-CoA = N(2)-malonyl-D-tryptophan + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:D-tryptophan N-malonyltransferase activity MetaCyc:D-TRYPTOPHAN-N-MALONYLTRANSFERASE-RXN|KEGG_REACTION:R02482|EC:2.3.1.112|RHEA:23320 molecular_function owl:Class GO:0047823 biolink:NamedThing D-glutamyltransferase activity Catalysis of the reaction: L(or D)-glutamine + D-glutamyl-peptide = NH3 + 5-glutamyl-D-glutamyl-peptide. tmpzr1t_l9r_go_relaxed.owl D-glutamyl transpeptidase activity|D-gamma-glutamyl transpeptidase activity|glutamine:D-glutamyl-peptide 5-glutamyltransferase activity EC:2.3.2.1|MetaCyc:D-GLUTAMYLTRANSFERASE-RXN|RHEA:35623 molecular_function owl:Class GO:0110008 biolink:NamedThing ncRNA deadenylation Shortening of the poly(A) tail of a nuclear-transcribed ncRNA. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:1904886 biolink:NamedThing beta-catenin destruction complex disassembly The disaggregation of a beta-catenin destruction complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl dissociation of beta-catenin degradation complex|BDC disassembly|Axin-APC-beta-catenin-GSK3B complex disassembly|APC-Axin-1-beta-catenin complex disassembly|beta-catenin degradation complex disassembly|23S APC complex disassembly bf 2016-01-05T11:41:02Z biological_process owl:Class GO:0047132 biolink:NamedThing dihydrobenzophenanthridine oxidase activity Catalysis of the reaction: O2 + dihydrosanguinarine = H2O2 + sanguinarine. tmpzr1t_l9r_go_relaxed.owl dihydrobenzophenanthridine:oxygen oxidoreductase activity RHEA:16621|EC:1.5.3.12|MetaCyc:1.5.3.12-RXN molecular_function owl:Class GO:0004089 biolink:NamedThing carbonate dehydratase activity Catalysis of the reaction: H2CO3 = CO2 + H2O. tmpzr1t_l9r_go_relaxed.owl carbonic anhydrase A|carbonic dehydratase activity|anhydrase activity|carbonate anhydrase activity|carbonate hydro-lyase (carbon-dioxide-forming)|carbonic acid anhydrase activity|carbonic anhydrase activity|carbonate hydro-lyase activity|carboxyanhydrase activity MetaCyc:CARBODEHYDRAT-RXN|Reactome:R-HSA-1475435|Reactome:R-HSA-1475022|Reactome:R-HSA-1237059|EC:4.2.1.1|RHEA:10748|Reactome:R-HSA-1475025|Reactome:R-HSA-1237081|Reactome:R-HSA-1475017|Reactome:R-HSA-1237047|Reactome:R-HSA-1475028|Reactome:R-HSA-1475436|Reactome:R-HSA-1475032|Reactome:R-HSA-1475026|Reactome:R-HSA-1237045 molecular_function owl:Class GO:0102997 biolink:NamedThing progesterone 5beta- reductase activity Catalysis of the reaction: H+ + progesterone + NADPH <=> 5beta-pregnane-3,20-dione + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9726 molecular_function owl:Class GO:0061336 biolink:NamedThing cell morphogenesis involved in Malpighian tubule morphogenesis The shape change of an epithelial cell from a columnar to squamous cell morphology that contributes to the shaping of the Malpighian tubule. tmpzr1t_l9r_go_relaxed.owl dph 2010-09-28T02:11:47Z biological_process owl:Class GO:1990007 biolink:NamedThing membrane stack A configuration of endoplasmic reticulum (ER) found in Purkinje cells in the cerebellum and in axons in the lateral vestibular nucleus, consisting of parallel and interconnecting tubules whose outer surfaces are covered by particles or ringlike structures. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao2114874506 pr 2012-12-11T14:58:16Z cellular_component owl:Class GO:0050184 biolink:NamedThing phosphatidylcholine desaturase activity Catalysis of the reaction: 1-acyl-2-oleoyl-sn-glycero-3-phosphocholine + NAD(+) = 1-acyl-2-linoleoyl-sn-glycero-3-phosphocholine + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl linoleate synthase activity|oleoylphosphatidylcholine desaturase activity|oleate desaturase activity|1-acyl-2-oleoyl-sn-glycero-3-phosphocholine:NAD+ delta12-oxidoreductase activity|acyl-lipid omega-6 desaturase (cytochrome b5)|oleoyl-CoA desaturase activity MetaCyc:PHOSPHATIDYLCHOLINE-DESATURASE-RXN|RHEA:12564|EC:1.14.19.22|KEGG_REACTION:R03475 molecular_function owl:Class GO:0102612 biolink:NamedThing syn-pimaradiene 6beta-hydroxylase activity Catalysis of the reaction: 9beta-pimara-7,15-diene + NADPH + O2 + H+ <=> 6beta-hydroxy-syn-pimaradiene + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15452 molecular_function owl:Class GO:0036164 biolink:NamedThing cell-abiotic substrate adhesion The attachment of a cell to an underlying abiotic (non-living) substrate via adhesion molecules. tmpzr1t_l9r_go_relaxed.owl cell-abiotic surface adhesion bf 2012-03-27T11:18:33Z biological_process owl:Class GO:0052690 biolink:NamedThing trichloro-p-hydroquinone reductive dehalogenase activity Catalysis of the reaction: 2,3,6-trichlorohydroquinone + 2 glutathione = 2,6-dichlorohydroquinone + glutathione disulfide + HCl. tmpzr1t_l9r_go_relaxed.owl trichlorohydroquinone reductive dehalogenase activity|xenobiotic reductase activity|pentaerythritol tetranitrate reductase activity|tetrachlorohydroquinone reductive dehalogenase activity UM-BBD_reactionID:r0315|RHEA:56832 molecular_function owl:Class GO:0050379 biolink:NamedThing UDP-glucuronate 5'-epimerase activity Catalysis of the reaction: UDP-alpha-D-glucuronate = UDP-L-iduronate. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronic acid epimerase activity|UDP-glucuronic acid 5'-epimerase activity|UDPglucuronate 5'-epimerase activity|UDP-glucuronate 5' epimerase activity|uridine diphosphoglucuronate 5'-epimerase activity|C-5-uronosyl epimerase activity Reactome:R-HSA-2024100|Reactome:R-HSA-2076371|KEGG_REACTION:R01387|MetaCyc:UDP-GLUCURONATE-5-EPIMERASE-RXN molecular_function owl:Class GO:0097135 biolink:NamedThing cyclin E2-CDK2 complex A protein complex consisting of cyclin E2 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:59:57Z cellular_component owl:Class GO:0102950 biolink:NamedThing indole-3-acetyl-valine synthetase activity Catalysis of the reaction: indole-3-acetate + L-valine + ATP = H+ + indole-3-acetyl-valine + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9083 molecular_function owl:Class GO:0044563 biolink:NamedThing envenomation resulting in slowing of activation kinetics of voltage-gated potassium channel in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant slowing of the activation kinetics of the activity of a voltage-gated potassium channel in the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl voltage-dependence of activation shift (to the left) jl 2012-04-05T04:06:29Z biological_process owl:Class GO:0030114 biolink:NamedThing slime layer A slime layer is an easily removed, diffuse, unorganized layer of extracellular material that surrounds a cell. Specifically this consists mostly of exopolysaccharides, glycoproteins, and glycolipids. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Slime_layer cellular_component owl:Class GO:0043730 biolink:NamedThing 5-ureido-4-imidazole carboxylate hydrolase activity Catalysis of the reaction: 5-ureido-4-imidazole carboxylate + H2O = 5-amino-4-imidazole carboxylate + NH3 + CO2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050504 biolink:NamedThing mannosyl-3-phosphoglycerate synthase activity Catalysis of the reaction: 3-phospho-D-glycerate + GDP-alpha-D-mannose = 2-(alpha-D-mannosyl)-3-phosphoglycerate + GDP + H(+). tmpzr1t_l9r_go_relaxed.owl MPG synthase activity|GDP-mannose:3-phosphoglycerate 3-alpha-D-mannosyltransferase activity RHEA:13537|MetaCyc:2.4.1.217-RXN|EC:2.4.1.217|KEGG_REACTION:R05768 molecular_function owl:Class GO:0006880 biolink:NamedThing intracellular sequestering of iron ion The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl intracellular sequestration of iron ion|intracellular retention of iron ion|intracellular iron ion sequestering|intracellular iron ion retention|intracellular iron ion sequestration|intracellular iron ion storage|intracellular storage of iron ion biological_process owl:Class GO:0072585 biolink:NamedThing xanthosine nucleotidase activity Catalysis of the reaction: xanthosine + H2O = D-ribose + xanthine. tmpzr1t_l9r_go_relaxed.owl xanthosine ribohydrolase activity MetaCyc:RXN0-363|RHEA:27994 mah 2011-02-08T04:38:31Z molecular_function owl:Class GO:0009576 biolink:NamedThing leucoplast stroma The space enclosed by the double membrane of a leucoplast. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0046473 biolink:NamedThing phosphatidic acid metabolic process The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. tmpzr1t_l9r_go_relaxed.owl phosphatidic acid metabolism biological_process owl:Class GO:0102562 biolink:NamedThing hydroxyproline O-arbinofuranose transferase activity Catalysis of the reaction: UDP-beta-L-arabinofuranose + a [protein]-trans-4-hydroxy-L-proline = UDP + H+ + a protein-O-(beta-L-arabinofuranose)-trans-4-hydroxy-L-proline. tmpzr1t_l9r_go_relaxed.owl RHEA:49472|MetaCyc:RXN-15011 molecular_function owl:Class GO:0035628 biolink:NamedThing cystic duct development The progression of the cystic duct over time, from its formation to the mature structure. The cystic duct runs from the gall bladder to the common bile duct. tmpzr1t_l9r_go_relaxed.owl bf 2010-12-10T01:24:28Z biological_process owl:Class GO:0102995 biolink:NamedThing angelicin synthase activity Catalysis of the reaction: columbianetin + NADPH + O2 + H+ <=> angelicin + acetone + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.148|RHEA:27481|MetaCyc:RXN-9689 molecular_function owl:Class GO:0044849 biolink:NamedThing estrous cycle A type of ovulation cycle, which occurs in most mammalian therian females, where the endometrium is resorbed if pregnancy does not occur. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Estrous_cycle jl 2014-07-16T13:41:42Z biological_process owl:Class GO:0050089 biolink:NamedThing mannose isomerase activity Catalysis of the reaction: D-mannose = D-fructose. tmpzr1t_l9r_go_relaxed.owl D-mannose isomerase activity|D-mannose aldose-ketose-isomerase activity|D-mannose ketol-isomerase activity EC:5.3.1.7|KEGG_REACTION:R00877|RHEA:22604|MetaCyc:MANNOSE-ISOMERASE-RXN molecular_function owl:Class GO:0070594 biolink:NamedThing juvenile hormone response element binding Binding to a juvenile hormone response element (JHRE), a conserved sequence found in the promoters of genes whose expression is regulated in response to juvenile hormone. tmpzr1t_l9r_go_relaxed.owl JHRE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. mah 2009-04-28T03:31:27Z molecular_function owl:Class GO:0005715 biolink:NamedThing late recombination nodule An electron dense structure that is associated with meiotic chromosomes in pachytene during meiosis I. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018855 biolink:NamedThing 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity Catalysis of the reaction: 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetate + ATP + CoA = AMP + diphosphate + 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0429|RHEA:33419|EC:6.2.1.38 molecular_function owl:Class GO:0031844 biolink:NamedThing type 4 neuropeptide Y receptor binding Binding to a type 4 neuropeptide Y receptor. tmpzr1t_l9r_go_relaxed.owl pancreatic polypeptide receptor binding|type 4 neuropeptide Y receptor ligand molecular_function owl:Class GO:0102002 biolink:NamedThing valine N-monooxygenase (oxime forming) activity Catalysis of the reaction: L-valine + 2 O2 + 2 NADPH(4-) + 2 H+ <=> (E)-2-methylpropanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.38|RHEA:28606|MetaCyc:1.14.13.118-RXN molecular_function owl:Class GO:0047602 biolink:NamedThing acetoacetate decarboxylase activity Catalysis of the reaction: acetoacetate + H(+) = acetone + CO(2). tmpzr1t_l9r_go_relaxed.owl acetoacetate carboxy-lyase activity|acetoacetate carboxy-lyase (acetone-forming)|acetoacetic acid decarboxylase activity KEGG_REACTION:R01366|EC:4.1.1.4|RHEA:19729|MetaCyc:ACETOACETATE-DECARBOXYLASE-RXN molecular_function owl:Class GO:0034713 biolink:NamedThing type I transforming growth factor beta receptor binding Binding to a type I transforming growth factor beta receptor. tmpzr1t_l9r_go_relaxed.owl baboon ligand|sax binding|thickveins binding|tkv binding|type I TGF-beta binding|tkv ligand|babo ligand|transforming growth factor beta ligand binding to type I receptor|saxophone binding|sax ligand|thickveins ligand|baboon receptor ligand|baboon binding|saxophone ligand|babo binding|TGF-beta type I binding|transforming growth factor beta receptor type I binding GO:0005116|GO:0005103|GO:0005120 molecular_function owl:Class GO:0097726 biolink:NamedThing LEM domain binding Binding to a LEM domain. The LEM domain (for lamina-associated polypeptide, emerin, MAN1 domain) is present in a group of nuclear proteins that bind chromatin through interaction of the LEM motif with the conserved DNA crosslinking protein, barrier-to-autointegration factor (BAF). tmpzr1t_l9r_go_relaxed.owl lamina-associated polypeptide, emerin, MAN1 domain binding|LAP2, emerin, MAN1 domain binding pr 2016-09-19T10:19:02Z molecular_function owl:Class GO:0004951 biolink:NamedThing cholecystokinin receptor activity Combining with cholecystokinin and transmitting the signal across the membrane by activating an associated G-protein to initiate a change in cell activity. Cholecystokinin can act as a neuropeptide or as a gastrointestinal hormone. tmpzr1t_l9r_go_relaxed.owl CCK receptor activity molecular_function owl:Class GO:0046820 biolink:NamedThing 4-amino-4-deoxychorismate synthase activity Catalysis of the reaction: L-glutamine + chorismate = 4-amino-4-deoxychorismate + L-glutamate. It is composed of two enzymatic activities (which may be present on one or two polypeptides); the first is a glutaminase which yields ammonia from glutamine, releasing glutamate. The ammonia is used by the second activity which catalyzes the amination of chorismate to form 4-amino-4-deoxychorismate. tmpzr1t_l9r_go_relaxed.owl para-aminobenzoic acid (PABA) synthase|ADC synthase activity|p-aminobenzoate synthetase|PabB activity|chorismate:L-glutamine amido-ligase activity|aminodeoxychorismate synthase activity|para-aminobenzoic acid synthase activity EC:2.6.1.85|KEGG_REACTION:R01716|RHEA:11672|MetaCyc:PABASYN-RXN Note that the name 'para-aminobenzoic acid synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional 4-amino-4-deoxychorismate lyase activity was discovered. It is the lyase activity that actually produces para-aminobenzoic acid from 4-amino-4-deoxychorismate. molecular_function owl:Class GO:0102508 biolink:NamedThing cyanidin 3,7-diglucoside glucosidase activity Catalysis of the reaction: cyanidin 3,7-di-O-beta-D-glucoside betaine + H2O <=> cyanidin 3-O-beta-D-glucoside betaine + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14435 molecular_function owl:Class GO:0015212 biolink:NamedThing cytidine transmembrane transporter activity Enables the transfer of cytidine, cytosine riboside, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0106226 biolink:NamedThing peptide 2-hydroxyisobutyryltransferase activity Catalysis of the reaction: 2-hydroxyisobutyryl-CoA + lysine in peptide = CoA + N-2-hydroxyisobutyryl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl RHEA:24180 hjd 2019-10-17T18:55:24Z molecular_function owl:Class GO:0034779 biolink:NamedThing 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA hydrolase activity Catalysis of the reaction: 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA + H2O = 3-isopropenylpimelyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1004 molecular_function owl:Class GO:0030591 biolink:NamedThing 2'-deoxyguanosine DNA ADP-ribosyltransferase activity Catalysis of the transfer of the ADP-ribose group of NAD+ to the amino group at N2 of 2'-deoxyguanosine to yield N2-(alpha-ADP-ribos-1-yl)-2'-deoxyguanosine and its beta form. tmpzr1t_l9r_go_relaxed.owl NAD DNA ADP-ribosyltransferase activity molecular_function owl:Class GO:0021748 biolink:NamedThing dorsal cochlear nucleus development The process whose specific outcome is the progression of the dorsal cochlear nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050406 biolink:NamedThing [acetyl-CoA carboxylase]-phosphatase activity Catalysis of the reaction: [acetyl-CoA carboxylase]-phosphate + H2O = [acetyl-CoA carboxylase] + phosphate. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:carbon-dioxide ligase (ADP-forming)-phosphate phosphohydrolase activity|acetyl-CoA carboxylase-phosphatase activity MetaCyc:ACETYL-COA-CARBOXYLASE-PHOSPHATASE-RXN|RHEA:17125|EC:3.1.3.44 molecular_function owl:Class GO:0050009 biolink:NamedThing isopropanol dehydrogenase (NADP+) activity Catalysis of the reaction: NADP(+) + propan-2-ol = acetone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl propan-2-ol:NADP+ oxidoreductase activity EC:1.1.1.80|MetaCyc:ISOPROPANOL-DEHYDROGENASE-NADP+-RXN|KEGG_REACTION:R01550|RHEA:21792 molecular_function owl:Class GO:0010494 biolink:NamedThing cytoplasmic stress granule A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress. tmpzr1t_l9r_go_relaxed.owl stress granule|cytoplasmic mRNP granule Wikipedia:Stress_granule cellular_component owl:Class GO:0033799 biolink:NamedThing myricetin 3'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + myricetin = S-adenosyl-L-homocysteine + laricitrin. tmpzr1t_l9r_go_relaxed.owl CrCOMT2|flavonoid 3',5'-O-dimethyltransferase activity|myricetin 3-O-methyltransferase activity|S-adenosyl-L-methionine:myricetin O-methyltransferase activity MetaCyc:RXN-13912|KEGG_REACTION:R06815|RHEA:25629|EC:2.1.1.267;|MetaCyc:RXN-8451 Note that this term represents one of two reactions that are grouped together in EC:2.1.1.267 GO:0102437 molecular_function owl:Class GO:0047309 biolink:NamedThing dihydroxyphenylalanine transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-dopa = 3,4-dihydroxyphenylpyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl DOPA aminotransferase activity|glutamate-DOPP transaminase (GDT)|dopa transaminase activity|dihydroxyphenylalanine aminotransferase activity|3,4-dihydroxy-L-phenylalanine:2-oxoglutarate aminotransferase activity|L-dopa transaminase activity|aspartate-DOPP transaminase (ADT)|phenylalanine-DOPP transaminase (PDT) MetaCyc:2.6.1.49-RXN|RHEA:15273|EC:2.6.1.49|KEGG_REACTION:R02077 molecular_function owl:Class GO:0110069 biolink:NamedThing syncytial embryo cellularization The separation of a syncytial embryo into individual cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14543 kmv 2017-11-22T19:59:19Z biological_process owl:Class GO:0000252 biolink:NamedThing C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity Catalysis of the reaction: 3-beta-hydroxy-4-beta-methyl-5-alpha-cholesta-8,24-dien-4-alpha-carboxylate + NAD(P)+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + CO2 + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl C-3 sterol dehydrogenase activity|3beta-hydroxy-4beta-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating)|3beta-hydroxy-4beta-methylcholestenoate dehydrogenase activity|sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)|3beta-hydroxy-4alpha-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating)|sterol-4-carboxylate 3-dehydrogenase (decarboxylating) activity|C-3 sterol dehydrogenase (C-4 decarboxylase) activity|3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylate:NAD(P)+ 3-oxidoreductase (decarboxylating)|sterol 4alpha-carboxylic decarboxylase activity Reactome:R-HSA-194718|Reactome:R-HSA-194642|EC:1.1.1.170 Note that zymosterol is cholesta-8,24-dien-3-ol. molecular_function owl:Class GO:0102233 biolink:NamedThing crotonaldehyde redutase activity Catalysis of the reaction: (cis)-crotonaldehyde + NADPH + H+ <=> butanal + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12292 molecular_function owl:Class GO:0090551 biolink:NamedThing response to manganese starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of manganese. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-22T13:57:16Z biological_process owl:Class GO:0048098 biolink:NamedThing antennal joint development The process whose specific outcome is the progression of the antennal joint over time, from its formation to the mature structure. The antennal joint is the joint between antennal segments. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047164 biolink:NamedThing isoflavone-7-O-beta-glucoside 6''-O-malonyltransferase activity Catalysis of the reaction: biochanin-A + malonyl-CoA = 6'-malonyl-biochanin A + CoA. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:isoflavone-7-O-beta-D-glucoside 6''-O-malonyltransferase activity|MAT-7|flavone (flavonol) 7-O-glycoside malonyltransferase activity|malonyl-CoA:flavone/flavonol 7-O-glucoside malonyltransferase activity|malonyl-coenzyme A:flavone/flavonol-7-O-glycoside malonyltransferase activity|flavone/flavonol 7-O-beta-D-glucoside malonyltransferase activity|malonyl-coenzyme A:isoflavone 7-O-glucoside-6''-malonyltransferase activity EC:2.3.1.115|MetaCyc:2.3.1.115-RXN|RHEA:15581 molecular_function owl:Class GO:0102428 biolink:NamedThing kaempferol-3-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: kaempferol 3-O-glucoside + UDP-alpha-D-glucose <=> kaempferol-3-gentiobioside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13830 molecular_function owl:Class GO:0070052 biolink:NamedThing collagen V binding Binding to a type V collagen trimer. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0030798 biolink:NamedThing trans-aconitate 2-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + trans-aconitate = (E)-3-(methoxycarbonyl)pent-2-enedioate + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:(E)-prop-1-ene-1,2,3-tricarboxylate 2'-O-methyltransferase activity KEGG_REACTION:R05763|EC:2.1.1.144|MetaCyc:RXN0-2441|RHEA:14969 molecular_function owl:Class GO:0045551 biolink:NamedThing cinnamyl-alcohol dehydrogenase activity Catalysis of the reaction: cinnamyl alcohol + NADP+ = cinnamaldehyde + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl cinnamyl alcohol dehydrogenase activity|cinnamyl-alcohol:NADP+ oxidoreductase activity|CAD activity RHEA:10392|EC:1.1.1.195|MetaCyc:CINNAMYL-ALCOHOL-DEHYDROGENASE-RXN molecular_function owl:Class GO:0050636 biolink:NamedThing vinorine synthase activity Catalysis of the reaction: 16-epivellosimine + acetyl-CoA = CoA + vinorine. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:16-epivellosimine O-acetyltransferase (cyclizing) KEGG_REACTION:R05876|MetaCyc:2.3.1.160-RXN|EC:2.3.1.160|RHEA:24016 molecular_function owl:Class GO:0042807 biolink:NamedThing central vacuole A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0052693 biolink:NamedThing epoxyqueuosine reductase activity Catalysis of the reaction: epoxyqueuosine in tRNA + reductant = queuosine in tRNA + oxidised reductant. tmpzr1t_l9r_go_relaxed.owl EC:1.17.99.6|RHEA:32159 molecular_function owl:Class GO:0061776 biolink:NamedThing topological DNA co-entrapment activity A DNA binding activity in which a protein complex interacts with more than one DNA duplex to encircle the DNA molecules with a loose fitting ring. tmpzr1t_l9r_go_relaxed.owl topological DNA entrapment activity https://github.com/geneontology/go-ontology/issues/20522 dph 2016-07-13T13:10:15Z molecular_function owl:Class GO:0046904 biolink:NamedThing calcium oxalate binding Binding to calcium oxalate, CaC2O4, a salt of oxalic acid. In animals, it may be excreted in urine or retained in the form of urinary calculi. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019160 biolink:NamedThing NMN nucleosidase activity Catalysis of the reaction: H(2)O + nicotinamide mononucleotide = D-ribose 5-phosphate + H(+) + nicotinamide. tmpzr1t_l9r_go_relaxed.owl nicotinamide mononucleotide nucleosidase activity|NMNGhase activity|NMN glycohydrolase activity|NMNase activity|nicotinamide-nucleotide phosphoribohydrolase activity|nicotinamide mononucleotidase activity RHEA:23140|MetaCyc:NMNNUCLEOSID-RXN|EC:3.2.2.14|KEGG_REACTION:R01270 molecular_function owl:Class GO:0099000 biolink:NamedThing viral genome ejection through host cell envelope, contractile tail mechanism Ejection by a non-enveloped prokaryotic virus of its genome into the host cytoplasm via a contractile tail ejection system consisting of a baseplate, a central tube and an external contractile sheath. Upon binding to the host cell surface, the baseplate changes its conformation and triggers sheath contraction, driving the rigid internal tail tube through the cell envelope. tmpzr1t_l9r_go_relaxed.owl viral contractile tail ejection system VZ:3950 biological_process owl:Class GO:0052786 biolink:NamedThing alpha-linked polysaccharide catabolism to maltotriose The breakdown of large alpha-linked polysaccharides by hydrolysis of (1->4)-alpha-D-glucosidic linkages to yield maltotriose. tmpzr1t_l9r_go_relaxed.owl alpha-amylase-mediated polysaccharide catabolism, producing maltotriose|maltotriose-forming alpha-amylase activity ai 2011-10-04T09:59:59Z biological_process owl:Class GO:0140609 biolink:NamedThing phycocyanobilin biosynthetic process The chemical reactions or pathway resulting in the formation of phycocyanobilin, which involves the oxidative cleavage of heme by a heme oxygenase (HO) to form biliverdin IX alpha. Biliverdin IX alpha is subsequently converted to phycocyanobilin by a ferredoxin-dependent oxidoreductase (PCYA). tmpzr1t_l9r_go_relaxed.owl phycocyanobilin biosynthesis https://github.com/geneontology/go-ontology/issues/20941 pg 2021-02-24T10:02:19Z biological_process owl:Class GO:0033959 biolink:NamedThing deoxyribodipyrimidine endonucleosidase activity Catalysis of the cleavage of the N-glycosidic bond between the 5'-pyrimidine residue in cyclobutadipyrimidine (in DNA) and the corresponding deoxy-D-ribose residue. tmpzr1t_l9r_go_relaxed.owl pyrimidine dimer DNA-glycosylase activity|deoxy-D-ribocyclobutadipyrimidine polynucleotidodeoxyribohydrolase activity|deoxyribonucleate pyrimidine dimer glycosidase activity|pyrimidine dimer DNA glycosylase activity|endonuclease V activity|PD-DNA glycosylase activity|T4-induced UV endonuclease activity EC:3.2.2.17|MetaCyc:3.2.2.17-RXN molecular_function owl:Class GO:0102159 biolink:NamedThing baicalein 7-O-glucuronosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucuronate + baicalein <=> H+ + UDP + baicalin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11755|RHEA:28314|EC:2.4.1.253 molecular_function owl:Class GO:0016521 biolink:NamedThing pituitary adenylate cyclase activating polypeptide activity The action characteristic of pituitary adenylate cyclase activating polypeptide, a peptide produced in the hypothalamus that binds to receptors to exert pleiotropic effects including control of neurotransmitter release, vasodilation, bronchodilation, activation of intestinal motility, increase in insulin and histamine secretion, immune modulation, and stimulation of cell proliferation and differentiation. tmpzr1t_l9r_go_relaxed.owl pituitary adenylyl cyclase activating polypeptide activity molecular_function owl:Class GO:0002933 biolink:NamedThing lipid hydroxylation The covalent attachment of a hydroxyl group to one or more fatty acids in a lipid. tmpzr1t_l9r_go_relaxed.owl fatty acid hydroxylation hjd 2012-04-24T02:26:33Z biological_process owl:Class GO:1990334 biolink:NamedThing Bfa1-Bub2 complex A protein complex that acts as a two-component GTPase-activating protein for Tem1 GTPase, thus regulating a signal transduction cascade, called the mitotic exit network (MEN), which is required for mitotic exit and cytokinesis. Bub2/Bfa1 keeps Tem1 inactive until the spindle is properly oriented, thus inhibiting MEN activation. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-17T14:34:21Z cellular_component owl:Class GO:0047509 biolink:NamedThing (R)-dehydropantoate dehydrogenase activity Catalysis of the reaction: (R)-4-dehydropantoate + H(2)O + NAD(+) = (R)-3,3-dimethylmalate + 2 H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl D-aldopantoate dehydrogenase activity|D-2-hydroxy-3,3-dimethyl-3-formylpropionate:diphosphopyridine nucleotide (DPN+) oxidoreductase activity|(R)-4-dehydropantoate:NAD+ 4-oxidoreductase activity EC:1.2.1.33|KEGG_REACTION:R03198|MetaCyc:R-DEHYDROPANTOATE-DEHYDROGENASE-RXN|RHEA:19349 molecular_function owl:Class GO:0120274 biolink:NamedThing virus coreceptor activity Combining with a virus component, and in cooperation with a nearby primary receptor, initiating a change in cell activity. tmpzr1t_l9r_go_relaxed.owl viral coreceptor activity https://github.com/geneontology/go-ontology/issues/20137 krc 2020-10-20T18:32:45Z molecular_function owl:Class GO:0034365 biolink:NamedThing discoidal high-density lipoprotein particle A newly formed high-density lipoprotein particle; consists of a phospholipid bilayer surrounded by two or more APOA1 molecules. The discoidal HDL particle is formed when lipid-free or lipid-poor APOA1 acquires phospholipids and unesterified cholesterol from either cell membranes or triglyceride-rich lipoproteins (undergoing lipolysis by lipoprotein lipase). tmpzr1t_l9r_go_relaxed.owl nascent high-density lipoprotein particle|discoidal HDL|nascent HDL cellular_component owl:Class GO:0034990 biolink:NamedThing nuclear mitotic cohesin complex A cohesin complex that mediates sister chromatid cohesion in the nucleus during mitosis; has a subunit composition distinct from that of the meiotic cohesin complex. tmpzr1t_l9r_go_relaxed.owl Note that this term should be used to annotate gene products found in cohesin complexes in organisms that undergo closed mitosis (i. e. where the nuclear envelope does not break down, as in fungi). For organisms in which the nuclear envelope breaks down during mitosis, the parent should be used. cellular_component owl:Class GO:0018744 biolink:NamedThing limonene-1,2-epoxide hydrolase activity Catalysis of the reaction: limonene-1,2-epoxide + H2O = limonene-1,2-diol. Other substrates include alicyclic and 1-methyl-substituted epoxides, such as 1-methylcyclohexene oxide, indene oxide and cyclohexene oxide. tmpzr1t_l9r_go_relaxed.owl limonene oxide hydrolase activity EC:3.3.2.8|MetaCyc:3.3.2.8-RXN|UM-BBD_reactionID:r0734|RHEA:10700 molecular_function owl:Class GO:0052625 biolink:NamedThing 4-aminobenzoate amino acid synthetase activity Catalysis of the reaction: 4-aminobenzoate + ATP + amino acid = 4-aminobenzoyl amino acid conjugate + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl pABA amino acid synthetase activity|p-aminobenzoate amino acid synthetase activity|p-aminobenzoyl amino acid synthetase activity|4-aminobenzoyl amino acid synthetase activity molecular_function owl:Class GO:0051595 biolink:NamedThing response to methylglyoxal Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylglyoxal stimulus. Methylglyoxal is a 2-oxoaldehyde derived from propanal. tmpzr1t_l9r_go_relaxed.owl response to pyruvaldehyde biological_process owl:Class GO:0102041 biolink:NamedThing 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase Catalysis of the reaction: 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate = N-[(7,8-dihydropterin-6-yl)methyl]-4-(beta-D-ribofuranosyl)aniline 5'-phosphate + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.105|MetaCyc:RXN-10009|RHEA:35951 molecular_function owl:Class GO:0140634 biolink:NamedThing CARD8 inflammasome complex An inflammasome complex that consists of CARD8 and CASP1. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21092 pg 2021-04-09T11:24:48Z cellular_component owl:Class GO:1904275 biolink:NamedThing tricellular tight junction disassembly The disaggregation of a tricellular tight junction into its constituent components. tmpzr1t_l9r_go_relaxed.owl mr 2015-05-29T16:31:06Z biological_process owl:Class GO:0098606 biolink:NamedThing selenocystathionine gamma-lyase activity Catalysis of the reaction: L-Selenocystathionine + H2O => L-Selenocysteine + NH3 + 2-Oxobutanoic acid. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408543|RHEA:31151 dos 2014-04-16T11:20:00Z molecular_function owl:Class GO:0030354 biolink:NamedThing melanin-concentrating hormone activity The action characteristic of melanin-concentrating hormone, a cyclic peptide hormone that, upon receptor binding, induces melanin aggregation in melanocytes, and is also involved in regulating food intake and energy balance in mammals. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097261 biolink:NamedThing eoxin C4 synthase activity Catalysis of the reaction: eoxin A4 + glutathione = eoxin C4. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161768 pr 2012-03-08T02:59:00Z molecular_function owl:Class GO:0047392 biolink:NamedThing CMP-N-acylneuraminate phosphodiesterase activity Catalysis of the reaction: H2O + CMP-N-acylneuraminate = N-acylneuraminate + CMP. tmpzr1t_l9r_go_relaxed.owl CMP-sialic acid hydrolase activity|CMP-sialate hydrolase activity|CMP-N-acetylneuraminate hydrolase activity|CMP-N-acylneuraminate N-acylneuraminohydrolase activity|cytidine monophosphosialic hydrolase activity|CMP-N-acylneuraminic acid hydrolase activity|cytidine monophosphate-N-acetylneuraminic acid hydrolase activity|cytidine monophosphosialate hydrolase activity EC:3.1.4.40|RHEA:20185|MetaCyc:3.1.4.40-RXN molecular_function owl:Class GO:0102068 biolink:NamedThing alpha-humulene 10-hydroxylase activity Catalysis of the reaction: (1E,4E,8E)-alpha-humulene + NADPH + O2 + H+ <=> 10-hydroxy-alpha-humulene + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10628|EC:1.14.14.113|RHEA:32491 molecular_function owl:Class GO:0034003 biolink:NamedThing vetispiradiene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + vetispiradiene. tmpzr1t_l9r_go_relaxed.owl vetispiradiene-forming farnesyl pyrophosphate cyclase activity|vetispiradiene cyclase activity|trans,trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, vetispiradiene-forming) activity|pemnaspirodiene synthase activity|HVS MetaCyc:RXN-4823|RHEA:10340|EC:4.2.3.21|KEGG_REACTION:R06523 molecular_function owl:Class GO:0075196 biolink:NamedThing adhesion of symbiont haustorium mother cell to host The attachment of a haustorium mother cell of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont haustorium mother cell to host during symbiotic interaction Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0052750 biolink:NamedThing reactive-black-5:hydrogen-peroxide oxidoreductase activity Catalysis of the reaction: reactive black 5 + hydrogen peroxide = oxidized reactive black 5 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl versatile peroxidase activity EC:1.11.1.16|RHEA:22396|KEGG_REACTION:R07612|MetaCyc:RXN-8666 ai 2011-09-21T02:33:34Z molecular_function owl:Class GO:0033535 biolink:NamedThing ajugose metabolic process The chemical reactions and pathways involving ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. tmpzr1t_l9r_go_relaxed.owl ajugose metabolism biological_process owl:Class GO:0007639 biolink:NamedThing homeostasis of number of meristem cells Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in the meristem. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0022035 biolink:NamedThing rhombomere cell migration The movement of a cell within a rhombomere. This process is known to occur as an early step in the generation of anatomical structure from a rhombomere. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030378 biolink:NamedThing serine racemase activity Catalysis of the synthesis of free D-serine from L-serine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:5.1.1.18-RXN|EC:5.1.1.18|Reactome:R-HSA-9014766|RHEA:10980 molecular_function owl:Class GO:0018957 biolink:NamedThing phenanthrene catabolic process via trans-9(S),10(S)-dihydrodiolphenanthrene The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon, where trans-9(S),10(S)-dihydrodiolphenanthrene is the principal intermediate metabolite. tmpzr1t_l9r_go_relaxed.owl phenanthrene degradation via trans-9(S),10(S)-dihydrodiolphenanthrene|phenanthrene breakdown via trans-9(S),10(S)-dihydrodiolphenanthrene UM-BBD_pathwayID:pha2 biological_process owl:Class GO:0097265 biolink:NamedThing 5(S)-hydroxyeicosatetraenoic acid dehydrogenase activity Catalysis of the reaction: 5-HETE + NADP(+) = 5-oxo-ETE + NADPH + H(+). tmpzr1t_l9r_go_relaxed.owl 5-HETE dehydrogenase activity|5-hydroxy-eicosatetraenoic acid dehydrogenase activity|5(S)-HETE dehydrogenase activity Reactome:R-HSA-2161776 pr 2012-03-09T12:46:02Z molecular_function owl:Class GO:0052611 biolink:NamedThing beta-carotene 3-hydroxylase activity Catalysis of the reaction: beta-carotene + a reduced electron acceptor + oxygen = beta-cryptoxanthin + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl beta-carotene hydroxylase activity|carotene beta-ring hydroxylase activity RHEA:30323|MetaCyc:RXN-8025 molecular_function owl:Class GO:0036060 biolink:NamedThing slit diaphragm assembly The aggregation, arrangement and bonding together of a set of components to form a slit diaphragm, specialized cell-cell junction found between the interdigitating foot processes of the glomerular epithelium (the podocytes) in the vertebrate kidney, which is adapted for facilitating glomerular filtration. tmpzr1t_l9r_go_relaxed.owl bf 2011-12-12T04:38:40Z biological_process owl:Class GO:0010435 biolink:NamedThing 3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid CoA ligase activity Catalysis of the reaction: ATP + 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid + coenzyme A = AMP + diphosphate + 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoyl-CoA + H+. 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid is also known as OPC-8:0. tmpzr1t_l9r_go_relaxed.owl 3-oxo-2-(2'-[Z]-pentenyl)cyclopentane-1-octanoate CoA ligase activity|OPC-8:0 CoA ligase activity|3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid (OPC-8:0) CoA ligase activity EC:6.2.1.-|MetaCyc:RXN-10695 molecular_function owl:Class GO:0044105 biolink:NamedThing L-xylulose reductase (NAD+) activity Catalysis of the reaction: xylitol + NAD+ = L-xylulose + NADH + H+. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21874 jl 2009-07-09T04:25:43Z molecular_function owl:Class GO:0019812 biolink:NamedThing type I site-specific deoxyribonuclease complex A multisubunit complex composed of two copies of a restriction (R) subunit, two copies of a methylation (M) subunit, and one copy of a specificity (S) subunit. This complex recognizes specific short DNA sequences (through the S subunit), and binds to them. If the recognition site is hemimethylated, the complex acts as a methyltransferase which modifies the recognition site, using S-adenosylmethionine as the methyl donor. Only the M and S subunits are required for this reaction. If the complex binds to an unmethylated recognition site, then the complex translocates the DNA bidirectionally in an ATP-dependent manner. When the translocation is stalled by impact with another complex or unusual DNA structure, the enzyme functions as an endonuclease and cleavage of the DNA will occur, hundreds or thousands of base pairs away from the recognition site. These DNA restriction systems are used by bacteria to defend against phage and other foreign DNA that may enter a cell. tmpzr1t_l9r_go_relaxed.owl type I restriction enzyme complex cellular_component owl:Class GO:0003194 biolink:NamedThing sinoatrial valve formation The developmental process pertaining to the initial formation of the sinoatrial valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl SA valve formation dph 2009-10-08T01:12:45Z biological_process owl:Class GO:0002574 biolink:NamedThing thrombocyte differentiation The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a thrombocyte, a nucleated cell found in all vertebrates but mammals involved in hemostasis. tmpzr1t_l9r_go_relaxed.owl Note that platelets are the non-nucleated mammalian functional equivalent of the nucleated thrombocytes of non-mammalian vertebrates and are sometimes also referred to as thrombocytes. Platelet formation in mammals is covered by the biological_process term platelet formation ; GO:0030220. biological_process owl:Class GO:0120209 biolink:NamedThing cone telodendria Cone telodendria are projections that originate from the cone pedicle and form gap junctions with other photoreceptors within the outer plexiform layer of the retina. tmpzr1t_l9r_go_relaxed.owl krc 2019-05-21T00:01:34Z cellular_component owl:Class GO:0005133 biolink:NamedThing interferon-gamma receptor binding Binding to an interferon-gamma receptor. tmpzr1t_l9r_go_relaxed.owl interferon-gamma|interferon-gamma receptor ligand molecular_function owl:Class GO:0047286 biolink:NamedThing NAD+-diphthamide ADP-ribosyltransferase activity Catalysis of the reaction: peptide diphthamide + NAD+ = peptide N-(ADP-D-ribosyl)diphthamide + niacinamide. tmpzr1t_l9r_go_relaxed.owl ADP-ribosyltransferase activity|mono(ADP-ribosyl)transferase activity|NAD+:peptide-diphthamide N-(ADP-D-ribosyl)transferase activity|NAD-diphthamide ADP-ribosyltransferase activity RHEA:11820|EC:2.4.2.36|Reactome:R-HSA-5336421|MetaCyc:RXN-11372 molecular_function owl:Class GO:0047649 biolink:NamedThing alkylglycerol kinase activity Catalysis of the reaction: 1-alkyl-sn-glycerol + ATP = 1-alkyl-sn-glycerol 3-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl ATP-alkylglycerol phosphotransferase activity|ATP:1-O-alkyl-sn-glycerol 3-phosphotransferase activity|1-alkylglycerol kinase (phosphorylating)|ATP:1-alkyl-sn-glycerol phosphotransferase activity|alkylglycerol phosphotransferase activity EC:2.7.1.93|MetaCyc:ALKYLGLYCEROL-KINASE-RXN|RHEA:16937|KEGG_REACTION:R04126 molecular_function owl:Class GO:0140018 biolink:NamedThing regulation of cytoplasmic translational fidelity Any process that modulates the ability of the cytoplasmic translational apparatus to interpret the genetic code. tmpzr1t_l9r_go_relaxed.owl pg 2017-04-06T12:27:10Z biological_process owl:Class GO:1904931 biolink:NamedThing MCM complex binding Binding to an MCM complex. tmpzr1t_l9r_go_relaxed.owl mini-chromosome maintenance complex binding mah 2016-01-29T11:48:10Z molecular_function owl:Class GO:0044556 biolink:NamedThing envenomation resulting in negative regulation of heart rate of other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the negative regulation of the heart rate of the bitten/stung organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-03-29T03:04:52Z biological_process owl:Class GO:0103080 biolink:NamedThing methylthiopropylmalate isomerase activity Catalysis of the reaction: 2-(3-methylthiopropyl)malate(2-) <=> 3-(3'-methylthio)propylmalate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4164|RHEA:50644 molecular_function owl:Class GO:0046693 biolink:NamedThing sperm storage The retention of sperm by a female following mating. tmpzr1t_l9r_go_relaxed.owl sperm sequestration|sperm sequestering|storage of sperm|retention of sperm|sequestration of sperm|sperm retention|sequestering of sperm biological_process owl:Class GO:0097452 biolink:NamedThing GAIT complex A protein complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. The complex binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs and suppresses their translation by blocking the recruitment of the 43S ribosomal complex to m7G cap-bound eIF4G. In humans it includes RPL13A, EPRS, SYNCRIP and GAPDH; mouse complexes lack SYNCRIP. tmpzr1t_l9r_go_relaxed.owl IFN-gamma-activated inhibitor of translation complex|gamma interferon-activated inhibitor of translation complex pr 2012-12-19T09:32:25Z cellular_component owl:Class GO:0046896 biolink:NamedThing N-terminal peptidyl-leucine methylation The methylation of the N-terminal leucine of proteins to form the derivative N-methyl-L-leucine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0337 biological_process owl:Class GO:0102431 biolink:NamedThing acyl-lipid omega-(9-4) desaturase Catalysis of the reaction: linoleoyl-[glycerolipid] + 2 ferrocytochrome b5 + O2 + 2 H(+) <=> pinolenoyl-[glycerolipid] + 2 ferricytochrome b5 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl linoleate delta5 desaturase activity MetaCyc:RXN-13858|EC:1.14.19.12|RHEA:46236 molecular_function owl:Class GO:1902342 biolink:NamedThing xylitol export The directed movement of xylitol out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl se 2013-07-30T16:09:55Z biological_process owl:Class GO:0061978 biolink:NamedThing mandibular condyle articular cartilage development The process whose specific outcome is the progression of mandibular joint condyle articular cartilage over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T20:04:49Z biological_process owl:Class GO:0061976 biolink:NamedThing temporomandibular joint articular cartilage development The process whose specific outcome is the progression of temporomandibular joint articular cartilage over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T20:01:00Z biological_process owl:Class GO:0102257 biolink:NamedThing 1-16:0-2-18:2-phosphatidylcholine sn-1 acylhydrolase activity Catalysis of the reaction: 1-palmitoyl-2-linoleoyl-phosphatidylcholine + H2O <=> 1-linoleoyl-sn-glycero-3-phosphocholine + hexadecanoate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12430 molecular_function owl:Class GO:0035181 biolink:NamedThing larval burrowing behavior Digging into the substrate by non-feeding larvae in search for food-free sites suitable for pupation. tmpzr1t_l9r_go_relaxed.owl larval burrowing behaviour biological_process owl:Class GO:0009045 biolink:NamedThing xylose isomerase activity Catalysis of the reaction: D-xylose = D-xylulose. tmpzr1t_l9r_go_relaxed.owl D-xylose aldose-ketose-isomerase activity|D-xylose ketol-isomerase activity|D-xylose ketoisomerase activity|D-xylose isomerase activity MetaCyc:XYLISOM-RXN|EC:5.3.1.5|RHEA:22816 molecular_function owl:Class GO:0047787 biolink:NamedThing delta4-3-oxosteroid 5beta-reductase activity Catalysis of the reactions: (1) 5beta-cholestan-3-one + NADP+ = cholest-4-en-3-one + NADPH + H+ and (2) 17,21-dihydroxy-5beta-pregnane-3,11,20-trione + NADP+ = cortisone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl androstenedione 5beta-reductase activity|testosterone 5-beta-reductase activity|cholestenone 5beta-reductase activity|5beta-reductase activity|testosterone 5beta-reductase activity|steroid 5beta-reductase activity|delta(4)-3-ketosteroid 5-beta-reductase activity|cortisone 5-beta-reductase activity|3-oxo-Delta(4)-steroid 5-beta-reductase activity|cortisone delta(4)-5-beta-reductase activity|delta(4)-5-beta-reductase activity|delta4-3-ketosteroid 5beta-reductase activity|cholestenone 5-beta-reductase activity|delta4-hydrogenase activity|delta(4)-hydrogenase activity|5beta-cholestan-3-one:NADP+ 4,5-oxidoreductase activity|3-oxo-5beta-steroid:NADP+ delta4-oxidoreductase activity|delta4-3-oxosteroid 5-beta-reductase activity|steroid 5-beta-reductase activity|3-oxo-delta4-steroid 5beta-reductase activity|cortisone b-reductase activity|4,5beta-dihydrocortisone:NADP+ delta4-oxidoreductase activity|5-beta-reductase activity|delta4-5beta-reductase activity|cholestenone 5b-reductase activity|cortisone delta4-5beta-reductase activity|cortisone 5beta-reductase activity|cortisone beta-reductase activity|androstenedione 5-beta-reductase activity MetaCyc:CHOLESTENONE-5-BETA-REDUCTASE-RXN|EC:1.3.1.3|MetaCyc:CORTISONE-BETA-REDUCTASE-RXN GO:0047752 molecular_function owl:Class GO:0050015 biolink:NamedThing kievitone hydratase activity Catalysis of the reaction: kievitone hydrate = H(2)O + H(+) + kievitone. tmpzr1t_l9r_go_relaxed.owl kievitone-hydrate hydro-lyase activity|KHase activity|kievitone-hydrate hydro-lyase (kievitone-forming) EC:4.2.1.95|KEGG_REACTION:R03622|RHEA:23604|MetaCyc:KIEVITONE-HYDRATASE-RXN molecular_function owl:Class GO:0007370 biolink:NamedThing ventral furrow formation Formation of a ventral indentation (furrow) from the blastoderm epithelium, which is internalized to form a tube in the interior of the embryo, marking the start of gastrulation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018824 biolink:NamedThing (hydroxyamino)benzene mutase activity Catalysis of the reaction: (hydroxyamino)benzene = 2-aminophenol. tmpzr1t_l9r_go_relaxed.owl HAB mutase activity|hydroxylaminobenzene mutase activity|hydroxylaminobenzene hydroxymutase activity|(hydroxyamino)benzene hydroxymutase activity RHEA:19245|UM-BBD_reactionID:r0304|MetaCyc:5.4.4.1-RXN molecular_function owl:Class GO:0008084 biolink:NamedThing imaginal disc growth factor receptor binding Binding to an imaginal disc growth factor receptor. tmpzr1t_l9r_go_relaxed.owl imaginal disc growth factor molecular_function owl:Class GO:0043023 biolink:NamedThing ribosomal large subunit binding Binding to a large ribosomal subunit. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019327 biolink:NamedThing lead sulfide oxidation The chemical reactions and pathways resulting in the conversion of lead sulfide to lead sulfate. tmpzr1t_l9r_go_relaxed.owl oxidation of lead sulfide|oxidation of galena|lead sulphide oxidation MetaCyc:P301-PWY biological_process owl:Class GO:0003862 biolink:NamedThing 3-isopropylmalate dehydrogenase activity Catalysis of the reaction: 3-carboxy-2-hydroxy-4-methylpentanoate + NAD+ = 3-carboxy-4-methyl-2-oxopentanoate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl (2R,3S)-3-isopropylmalate:NAD+ oxidoreductase activity|IPMDH|beta-isopropylmalate dehydrogenase activity|3-carboxy-2-hydroxy-4-methylpentanoate:NAD+ oxidoreductase activity|beta-isopropylmalic enzyme|beta-IPM dehydrogenase activity|threo-Ds-3-isopropylmalate dehydrogenase activity|IMDH activity MetaCyc:3-ISOPROPYLMALDEHYDROG-RXN|EC:1.1.1.85|RHEA:32271 molecular_function owl:Class GO:0045060 biolink:NamedThing negative thymic T cell selection The process of elimination of immature T cells in the thymus which react strongly with self-antigens. tmpzr1t_l9r_go_relaxed.owl negative thymic T lymphocyte selection|negative thymic T-cell selection|negative thymic T-lymphocyte selection biological_process owl:Class GO:0047082 biolink:NamedThing 3,9-dihydroxypterocarpan 6a-monooxygenase activity Catalysis of the reaction: (6aR,11aR)-3,9-dihydroxypterocarpan + H(+) + NADPH + O(2) = (6aS,11aS)-3,6a,9-trihydroxypterocarpan + H(2)O + NADP(+). (6aS,11aS)-3,6a,9-trihydroxypterocarpan is also known as (-)-glycinol. tmpzr1t_l9r_go_relaxed.owl 3,9-dihydroxypterocarpan 6alpha-monooxygenase|3,9-dihydroxypterocarpan 6a-hydroxylase activity|(6aR,11aR)-3,9-dihydroxypterocarpan,NADPH:oxygen oxidoreductase (6a-hydroxylating) KEGG_REACTION:R03452|MetaCyc:RXN-4505|EC:1.14.14.93|RHEA:15321 molecular_function owl:Class GO:0089715 biolink:NamedThing tRNA m6t6A37 methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing N6-threonylcarbamoyladenosine = S-adenosyl-L-homocysteine + tRNA containing N6-methylthreonylcarbamoyladenosine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN0-7114 This activity is distinct from 'tRNA (adenine-N6-)-methyltransferase activity' (GO:0016430) in that it requires the presence of a threonylcarbamoyl modification. molecular_function owl:Class GO:0004641 biolink:NamedThing phosphoribosylformylglycinamidine cyclo-ligase activity Catalysis of the reaction: 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-D-ribosyl)imidazole + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl 2-(formamido)-N1-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)|AIRS activity|2-(formamido)-1-N-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)|phosphoribosyl-aminoimidazole synthetase activity|AIR synthetase activity|5'-aminoimidazole ribonucleotide synthetase activity|AIR synthase activity|phosphoribosylaminoimidazole synthetase activity RHEA:23032|Reactome:R-HSA-73810|EC:6.3.3.1|KEGG_REACTION:R04208|MetaCyc:AIRS-RXN molecular_function owl:Class GO:0099610 biolink:NamedThing action potential initiation The initiating cycle of an action potential. In vertebrate neurons this typically occurs at an axon hillock. Not all initiated axon potentials propagate. tmpzr1t_l9r_go_relaxed.owl action potential triggering|action potential firing biological_process owl:Class GO:0019769 biolink:NamedThing low-affinity IgE receptor activity Combining with low affinity with an immunoglobulin of the IgE isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl low affinity IgE receptor activity|low affinity Fc receptor activity molecular_function owl:Class GO:0051210 biolink:NamedThing isotropic cell growth The process in which a cell irreversibly increases in size uniformly in all directions. In general, a rounded cell morphology reflects isotropic cell growth. tmpzr1t_l9r_go_relaxed.owl uniform cell growth biological_process owl:Class GO:0004937 biolink:NamedThing alpha1-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha1-adrenergic receptors; the activity involves transmitting the signal to the Gq alpha subunit of a heterotrimeric G protein. tmpzr1t_l9r_go_relaxed.owl alpha1 adrenoceptor molecular_function owl:Class GO:0008140 biolink:NamedThing cAMP response element binding protein binding Binding to a cAMP response element binding protein (a CREB protein). tmpzr1t_l9r_go_relaxed.owl CBP|3',5'-cAMP response element binding protein binding|CREB binding|cyclic AMP response element binding protein binding|adenosine 3',5'-cyclophosphate response element binding protein binding|3',5' cAMP response element binding protein binding molecular_function owl:Class GO:0101021 biolink:NamedThing estrogen 2-hydroxylase activity Catalysis of the reaction: estrogen + donor-H2 + O2 = 2-hydroxyestrogen + H2O. tmpzr1t_l9r_go_relaxed.owl oestrogen 2-hydroxylase activity molecular_function owl:Class GO:1904400 biolink:NamedThing response to Thyroid stimulating hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroid stimulating hormone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T20:57:53Z biological_process owl:Class GO:0047659 biolink:NamedThing alpha-santonin 1,2-reductase activity Catalysis of the reaction: 1,2-dihydrosantonin + NAD(P)+ = alpha-santonin + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl a-santonin 1,2-reductase activity|1,2-dihydrosantonin:NAD(P)+ 1,2-oxidoreductase activity EC:1.3.1.47|MetaCyc:ALPHA-SANTONIN-12-REDUCTASE-RXN molecular_function owl:Class GO:0035841 biolink:NamedThing new growing cell tip A cell tip that was newly formed at the last cell division, and that has started to grow after the cell has activated bipolar cell growth (i.e. in which new end take-off, NETO, has taken place). New end take-off is when monopolar cells initiate bipolar growth. tmpzr1t_l9r_go_relaxed.owl post-new end take-off new cell tip|post-NETO new cell tip|post-NETO new cell end|new cell tip after activation of bipolar cell growth bf 2011-05-06T01:35:07Z cellular_component owl:Class GO:0019125 biolink:NamedThing peptidyl-phenylalanine racemization The racemization of peptidyl-phenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0194 GO:0018371|GO:0018089 biological_process owl:Class GO:0031544 biolink:NamedThing peptidyl-proline 3-dioxygenase activity Catalysis of the reaction: peptidyl L-proline + 2-oxoglutarate + O2 = peptidyl trans-3-hydroxy-L-proline + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1902198 biolink:NamedThing 3-methylbut-2-enoyl-CoA(4-) metabolic process The chemical reactions and pathways involving 3-methylbut-2-enoyl-CoA(4-). tmpzr1t_l9r_go_relaxed.owl 3-methylbut-2-enoyl-CoA(4-) metabolism ms 2013-06-06T09:56:11Z biological_process owl:Class GO:0140569 biolink:NamedThing extraction of mislocalized protein from ER membrane The removal of a mislocalized protein from the endoplasmic reticulum (ER) membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20237 pg 2020-12-15T07:36:46Z biological_process owl:Class GO:0004572 biolink:NamedThing mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity Catalysis of the hydrolysis of the terminal (1->3)- and (1->6)-linked alpha-D-mannose residues in the mannosyl-oligosaccharide Man(5)(GlcNAc)(3). tmpzr1t_l9r_go_relaxed.owl mannosyl-oligosaccharide (1->3/6)-alpha-mannosidase activity|GlcNAc transferase I-dependent alpha1,3[alpha1,6]mannosidase activity|alpha-(1,3/6)-mannosidase activity|ManII activity|exo-1,3-1,6-alpha-mannosidase activity|alpha-mannosidase II|mannosidase II activity|mannosyl-oligosaccharide (1->3)-(1->6)-alpha-mannosidase activity|mannosyl-oligosaccharide (1->3,6)-alpha-mannosidase activity|alpha-D-mannosidase II|Golgi alpha-mannosidase II|1,3-(1,6-)mannosyl-oligosaccharide alpha-D-mannohydrolase activity Reactome:R-HSA-975814|MetaCyc:3.2.1.114-RXN|RHEA:56052|EC:3.2.1.114 molecular_function owl:Class GO:0018357 biolink:NamedThing protein-phycourobilin linkage via phycourobilin-bis-L-cysteine The linkage of the chromophore phycourobilin to phycoerythrins via phycourobilin-bis-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0260 GO:0018383 biological_process owl:Class GO:0047350 biolink:NamedThing glucuronate-1-phosphate uridylyltransferase activity Catalysis of the reaction: 1-phospho-alpha-D-glucuronate + UTP = diphosphate + UDP-alpha-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl UTP:1-phospho-alpha-D-glucuronate uridylyltransferase activity|UTP:glucuronate-1-phosphate uridylyltransferase activity|UDP-glucuronic acid pyrophosphorylase activity|UDP-D-glucuronic acid pyrophosphorylase activity|uridine diphosphoglucuronic pyrophosphorylase activity|UDP-glucuronate pyrophosphorylase activity RHEA:16325|KEGG_REACTION:R01381|MetaCyc:2.7.7.44-RXN|EC:2.7.7.44 molecular_function owl:Class GO:0035706 biolink:NamedThing T-helper 1 cell chemotaxis The directed movement of a T-helper 1 cell in response to an external stimulus. tmpzr1t_l9r_go_relaxed.owl Th1 cell chemotaxis bf 2011-03-02T02:36:49Z biological_process owl:Class GO:0004633 biolink:NamedThing phosphopantothenoylcysteine decarboxylase activity Catalysis of the reaction: N-[(R)-4-phosphonatopantothenoyl]-L-cysteinate + H(+) = CO(2) + pantetheine 4'-phosphate. tmpzr1t_l9r_go_relaxed.owl N-((R)-4'-phosphopantothenoyl)-L-cysteine carboxy-lyase activity|N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase activity|4-phosphopantothenoyl-L-cysteine decarboxylase activity|PPC-decarboxylase activity|N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase (pantotheine-4'-phosphate-forming)|4-phosphopantotheoylcysteine decarboxylase activity MetaCyc:P-PANTOCYSDECARB-RXN|EC:4.1.1.36|KEGG_REACTION:R03269|RHEA:16793|Reactome:R-HSA-196840 molecular_function owl:Class GO:0048717 biolink:NamedThing anterior cibarial plate morphogenesis The process in which the anatomical structures of the anterior cibarial plate are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0035198 biolink:NamedThing miRNA binding Binding to a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes. tmpzr1t_l9r_go_relaxed.owl microRNA binding molecular_function owl:Class GO:1990431 biolink:NamedThing priRNA 3'-end processing The process of forming the mature 3' end of a priRNA molecule. tmpzr1t_l9r_go_relaxed.owl priRNA 3' end processing|primal small RNA 3'-end processing jl 2014-07-29T15:34:19Z biological_process owl:Class GO:0042842 biolink:NamedThing D-xylose biosynthetic process The chemical reactions and pathways resulting in the formation of D-xylose, a naturally occurring plant polysaccharide. tmpzr1t_l9r_go_relaxed.owl D-xylose anabolism|D-xylose biosynthesis|D-xylose synthesis|D-xylose formation biological_process owl:Class GO:0061688 biolink:NamedThing glycolytic process via Entner-Doudoroff Pathway A glycolytic process in which the glucose is catabolized to pyruvate by first entering the Entner-Doudoroff pathway to yield pyruvate and glyceraldehyde-3-phosphate. The glyceraldehyde-3-phosphate is subsequently converted to pyruvate by the core glycolytic enzymes. tmpzr1t_l9r_go_relaxed.owl gluconate pathway dph 2015-03-12T14:39:00Z biological_process owl:Class GO:0030367 biolink:NamedThing interleukin-17 receptor binding Binding to an interleukin-17 receptor. tmpzr1t_l9r_go_relaxed.owl IL-17|interleukin-17 receptor ligand molecular_function owl:Class GO:0090586 biolink:NamedThing protein-phosphocysteine-N-acetylglucosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + N-acetylglucosamine (out) = protein cysteine + N-acetylglucosamine-6-phosphate (in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0044066 biolink:NamedThing modification by symbiont of host cell nucleus The process in which a symbiont organism effects a change in the structure or function of its host cell nucleus. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host nucleus|modification of host nucleus by symbiont|modification of host cell nucleus by symbiont biological_process owl:Class GO:0103074 biolink:NamedThing glucose-6-phosphate 3-dehydrogenase activity Catalysis of the reaction: NAD + D-glucopyranose 6-phosphate = NADH + H+ + 3-dehydro-D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN8J2-136|EC:1.1.1.361|RHEA:37547 molecular_function owl:Class GO:0046684 biolink:NamedThing response to pyrethroid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pyrethroid stimulus. Pyrethroids are a group of growth regulators, analogous to insect juvenile hormones, that interfere with the development of insect larvae and are used in the control of insects that are harmful in the adult stage. tmpzr1t_l9r_go_relaxed.owl pyrethroid resistance|pyrethroid susceptibility/resistance biological_process owl:Class GO:0050162 biolink:NamedThing oxalate oxidase activity Catalysis of the reaction: 2 H(+) + O(2) + oxalate = 2 CO(2) + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl aero-oxalo dehydrogenase activity|oxalate:oxygen oxidoreductase activity|oxalic acid oxidase activity EC:1.2.3.4|KEGG_REACTION:R00273|RHEA:21880|MetaCyc:OXALATE-OXIDASE-RXN molecular_function owl:Class GO:0075139 biolink:NamedThing response to host iron concentration Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting iron concentration in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host iron concentration Note that this term is used to annotate gene products of the symbiont. biological_process owl:Class GO:0080023 biolink:NamedThing 3R-hydroxyacyl-CoA dehydratase activity Catalysis of the reaction: 3R-hydroxyacyl-CoA = 2E-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5676637 molecular_function owl:Class GO:0044015 biolink:NamedThing histone acetyltransferase activity (H2B-K12 specific) Catalysis of the reaction: acetyl-CoA + histone H2B L-lysine (position 12) = CoA + histone H2B N6-acetyl-L-lysine (position 12). tmpzr1t_l9r_go_relaxed.owl histone lysine N-acetyltransferase activity (H2B-K12 specific) molecular_function owl:Class GO:0021927 biolink:NamedThing deep nuclear neuron precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to deep nuclear neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033538 biolink:NamedThing ajugose biosynthetic process using galactan:galactan galactosyltransferase The chemical reactions and pathways resulting in the formation of ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside, by a pathway in which galactan:galactan galactosyltransferase catalyzes chain elongation by transferring the alpha-galactosyl residue of one raffinose-family oligosaccharide to another. tmpzr1t_l9r_go_relaxed.owl ajugose synthesis using galactan:galactan galactosyltransferase|ajugose anabolism using galactan:galactan galactosyltransferase|ajugose formation using galactan:galactan galactosyltransferase|ajugose biosynthesis using galactan:galactan galactosyltransferase MetaCyc:PWY-5343 biological_process owl:Class GO:0050387 biolink:NamedThing urethanase activity Catalysis of the reaction: H(2)O + H(+) + urethane = CO(2) + ethanol + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl urethane hydrolase activity|urethane amidohydrolase (decarboxylating) MetaCyc:URETHANASE-RXN|KEGG_REACTION:R02359|EC:3.5.1.75|RHEA:21372 molecular_function owl:Class GO:1990955 biolink:NamedThing G-rich single-stranded DNA binding Binding to G-rich, single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl hjd 2016-05-13T17:44:28Z molecular_function owl:Class GO:0120145 biolink:NamedThing protein localization to basal ectoplasmic specialization A process in which a protein is transported to, or maintained in, a location within a basal ectoplasmic specialization. tmpzr1t_l9r_go_relaxed.owl protein localization in basal ectoplasmic specialization|protein localisation to basal ectoplasmic specialization|protein localisation in basal ectoplasmic specialization krc 2018-03-27T20:16:09Z biological_process owl:Class GO:0052626 biolink:NamedThing benzoate amino acid synthetase activity Catalysis of the reaction: benzoate + ATP + amino acid = benzoyl amino acid conjugate + AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl benzoyl amino acid synthetase activity molecular_function owl:Class GO:0034901 biolink:NamedThing endosulfan hydroxyether dehydrogenase activity Catalysis of the reaction: endosulfan hydroxyether = endosulfan lactone + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1411 molecular_function owl:Class GO:0102416 biolink:NamedThing quercetin gentiotrioside 1,6-glucosyltransferase activity Catalysis of the reaction: quercetin-3-gentiotrioside + UDP-alpha-D-glucose <=> quercetin-3-gentiotetraside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13799 molecular_function owl:Class GO:0016914 biolink:NamedThing follicle-stimulating hormone complex A gonadotrophic glycoprotein hormone secreted, in mammals, by the anterior pituitary gland; consists of alpha and beta subunits, the latter of which confers hormonal specificity. tmpzr1t_l9r_go_relaxed.owl FSH complex|follicle stimulating hormone complex cellular_component owl:Class GO:0030732 biolink:NamedThing methionine S-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + L-methionine = S-adenosyl-L-homocysteine + S-methyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl S-adenosylmethionine transmethylase activity|S-adenosyl-L-methionine:L-methionine S-methyltransferase activity|S-adenosyl methionine:methionine methyl transferase activity|S-adenosylmethionine-methionine methyltransferase activity|methionine methyltransferase activity RHEA:13761|EC:2.1.1.12|MetaCyc:METHIONINE-S-METHYLTRANSFERASE-RXN molecular_function owl:Class GO:0016554 biolink:NamedThing cytidine to uridine editing The conversion of a cytosine residue to uridine in an RNA molecule by deamination. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050621 biolink:NamedThing tryptophan alpha,beta-oxidase activity Catalysis of the reaction: L-tryptophan + O(2) = alpha,beta-didehydrotryptophan + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl L-tryptophan 2',3'-oxidase activity|L-tryptophan alpha,beta-dehydrogenase activity|L-tryptophan:oxygen alpha,beta-oxidoreductase activity|tryptophan a,b-oxidase activity EC:1.3.3.10|KEGG_REACTION:R05317|MetaCyc:1.4.3.17-RXN|RHEA:19901 Note that this was EC:1.4.3.17. molecular_function owl:Class GO:0097110 biolink:NamedThing scaffold protein binding Binding to a scaffold protein. Scaffold proteins are crucial regulators of many key signaling pathways. Although not strictly defined in function, they are known to interact and/or bind with multiple members of a signaling pathway, tethering them into complexes. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-28T05:16:53Z molecular_function owl:Class GO:0009949 biolink:NamedThing polarity specification of anterior/posterior axis Any process resulting in the establishment of polarity along the anterior/posterior axis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031773 biolink:NamedThing kisspeptin receptor binding Binding to a kisspeptin receptor. tmpzr1t_l9r_go_relaxed.owl G-protein coupled receptor 54 binding|metastin receptor binding|hOT7T175 receptor binding|hypogonadotropin-1 receptor binding|KiSS-1 receptor binding|kisspeptin receptor ligand molecular_function owl:Class GO:0070061 biolink:NamedThing fructose binding Binding to the D- or L-enantiomer of fructose, the ketohexose arabino-hex-2-ulose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052098 biolink:NamedThing formation by host of specialized structure for nutrient acquisition from symbiont The assembly by an organism of a cellular component or anatomical structure for the purpose of obtaining nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0038059 biolink:NamedThing IKKalpha-IKKalpha complex A homodimeric protein complex containing two IkappaB kinase (IKK) alpha subunits. tmpzr1t_l9r_go_relaxed.owl IkappaB kinase-alpha homodimer|IKKalpha homodimeric complex|IKKalpha-IKKalpha protein complex|IKKalpha homodimer|IkappaB kinase alpha homodimer bf 2012-01-10T09:29:53Z cellular_component owl:Class GO:0070207 biolink:NamedThing protein homotrimerization The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits. tmpzr1t_l9r_go_relaxed.owl protein homotrimer biosynthetic process|protein homotrimer biosynthesis|protein homotrimer formation|protein homotrimer assembly biological_process owl:Class GO:0008473 biolink:NamedThing ornithine cyclodeaminase activity Catalysis of the reaction: L-ornithine = L-proline + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl ornithine cyclase activity|ornithine cyclase (deaminating) activity|OCD activity|L-ornithine ammonia-lyase (cyclizing)|L-ornithine ammonia-lyase (cyclizing; L-proline-forming) EC:4.3.1.12|KEGG_REACTION:R00671|RHEA:24368|MetaCyc:ORNITHINE-CYCLODEAMINASE-RXN Note that cyclodeaminases are lyases according to EC, whereas deaminases are hydrolases. molecular_function owl:Class GO:0102854 biolink:NamedThing 1-18:2-2-18:1-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-18:2-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:3-2-18:1-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8321 molecular_function owl:Class GO:0047527 biolink:NamedThing 2,3-dihydroxybenzoate-serine ligase activity Catalysis of the reaction: ATP + 2,3-dihydroxybenzoate + L-serine = products of ATP breakdown + N-(2,3-dihydroxybenzoyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybenzoylserine synthetase activity|N-(2,3-dihydroxybenzoyl)-serine synthetase activity|2,3-dihydroxybenzoate:L-serine ligase activity RHEA:30571|EC:6.3.2.14|MetaCyc:23-DIHYDROXYBENZOATE--SERINE-LIGASE-RXN molecular_function owl:Class GO:0031387 biolink:NamedThing MPF complex A complex consisting of a Cdc2-class (also known as Cdc28) cyclin-dependent kinase and an M-phase cyclin such as S. pombe Cdc13. The MPF complex phosphorylates and activates the anaphase promoting complex (APC). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990472 biolink:NamedThing piRNA dual-strand cluster binding Binding to dual-strand piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs) where piRNAs originate from both DNA strands via noncanonical transcription. tmpzr1t_l9r_go_relaxed.owl An example of this is rhi in Drosophila melanogaster (Q7JXA8) in PMID:24906153 (inferred from direct assay). bhm 2014-08-29T14:50:54Z molecular_function owl:Class GO:0070584 biolink:NamedThing mitochondrion morphogenesis The process in which the anatomical structures of a mitochondrion are generated and organized. tmpzr1t_l9r_go_relaxed.owl Note that this term is intended for annotation of gene products involved in mitochondrial shape changes associated with development; an example is the morphogenesis of the Nebenkern during spermatogenesis. mah 2009-04-24T10:54:19Z biological_process owl:Class GO:0043701 biolink:NamedThing cyanosome A tissue-specific, membrane-bounded cytoplasmic organelle within which an unknown blue pigment is localized. Cyanosomes are synthesized in cyanophores and are blue in appearance. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102757 biolink:NamedThing NADPH phosphatase activity Catalysis of the reaction: NADPH + H2O = NADH + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7703|RHEA:60664 molecular_function owl:Class GO:0030944 biolink:NamedThing DDEL sequence binding Binding to a KDEL sequence, the C terminus tetrapeptide sequence Asp-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003864 biolink:NamedThing 3-methyl-2-oxobutanoate hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate. tmpzr1t_l9r_go_relaxed.owl ketopantoate hydroxymethyltransferase activity|oxopantoate hydroxymethyltransferase activity|5,10-methylene tetrahydrofolate:alpha-ketoisovalerate hydroxymethyltransferase activity|5,10-methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase activity|dehydropantoate hydroxymethyltransferase activity|alpha-ketoisovalerate hydroxymethyltransferase activity RHEA:11824|EC:2.1.2.11|MetaCyc:3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN molecular_function owl:Class GO:0044222 biolink:NamedThing anammoxosome An intracytoplasmic membrane-bounded compartment in anaerobic ammonium oxidation (anammox) bacteria, is the site of anammox catabolism. tmpzr1t_l9r_go_relaxed.owl jl 2009-11-12T04:03:24Z cellular_component owl:Class GO:0102581 biolink:NamedThing cyanidin 3-O-glucoside-p-coumaroyltransferase activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 4-coumaryl-CoA + H+ <=> cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15327 molecular_function owl:Class GO:0005170 biolink:NamedThing neurotrophin TRKC receptor binding Binding to a neurotrophin TRKC receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKC receptor ligand molecular_function owl:Class GO:0019553 biolink:NamedThing glutamate catabolic process via L-citramalate The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-citramalate. tmpzr1t_l9r_go_relaxed.owl glutamate degradation via L-citramalate|glutamate breakdown via L-citramalate MetaCyc:GLUDEG-II-PWY biological_process owl:Class GO:0060577 biolink:NamedThing pulmonary vein morphogenesis The process in which the anatomical structure of the pulmonary venous blood vessels are generated and organized. Pulmonary veins are blood vessels that transport blood from the lungs to the heart. tmpzr1t_l9r_go_relaxed.owl pulmonary venous blood vessel morphogenesis dph 2009-05-06T08:44:04Z biological_process owl:Class GO:0046737 biolink:NamedThing induction of cell-mediated immune response in host by virus The intentional, virally-encoded stimulation of a cell-mediated host defense response to viral infection. tmpzr1t_l9r_go_relaxed.owl active induction of cell-mediated immune response in host by virus|active viral induction of cell-mediated immune response in host biological_process owl:Class GO:0071185 biolink:NamedThing protocadherin-alpha-v4-protocadherin-gamma-a3 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdhga1-Pcdhga3 complex mah 2009-11-23T04:16:47Z cellular_component owl:Class GO:0106355 biolink:NamedThing 4-hydroxybenzoate 3-monooxygenase [NADH] activity Catalysis of the reaction: 4-hydroxybenzoate + H+ + NADH + O2 = 3,4-dihydroxybenzoate + H2O + NAD+. tmpzr1t_l9r_go_relaxed.owl RHEA:19473 hjd 2021-02-02T05:51:36Z molecular_function owl:Class GO:0071540 biolink:NamedThing eukaryotic translation initiation factor 3 complex, eIF3e An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3e. tmpzr1t_l9r_go_relaxed.owl eIF3e-containing eukaryotic translation initiation factor 3 complex mah 2010-01-12T02:20:24Z cellular_component owl:Class GO:0004370 biolink:NamedThing glycerol kinase activity Catalysis of the reaction: ATP + glycerol = sn-glycerol 3-phosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl glycerol kinase (phosphorylating)|ATP:glycerol 3-phosphotransferase activity|GK|glycerokinase activity|glyceric kinase activity|ATP:glycerol-3-phosphotransferase activity RHEA:21644|Reactome:R-HSA-75887|KEGG_REACTION:R00847|EC:2.7.1.30|MetaCyc:GLYCEROL-KIN-RXN molecular_function owl:Class GO:0090535 biolink:NamedThing WICH complex An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2H in mammals, which contain two ISWI homologs) and WSTF (Williams Syndrome Transcription Factor). WICH plays roles in regulation of RNAP I and III transcription and in DNA replication and repair. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-11T14:07:14Z cellular_component owl:Class GO:0002337 biolink:NamedThing B-1a B cell differentiation The process in which B cells acquire the specialized features of B-1a B cells. B-1a B cells are B-1 cells that express CD5 and arise from fetal liver precursors. tmpzr1t_l9r_go_relaxed.owl B-1a B-lymphocyte differentiation|B-1a B lymphocyte differentiation|B-1a B cell development|B-1a B-cell differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0036312 biolink:NamedThing phosphatidylinositol 3-kinase regulatory subunit binding Binding to a regulatory subunit of phosphatidylinositol 3-kinase. The regulatory subunit associates with the catalytic subunit to regulate both its activity and subcellular location. tmpzr1t_l9r_go_relaxed.owl p85 binding|PI3K regulatory subunit binding bf 2012-08-16T10:58:45Z molecular_function owl:Class GO:0034857 biolink:NamedThing 2-(methylthio)benzothiazole monooxygenase activity Catalysis of the reaction: 2-(methylthio)benzothiazole + 1/2 O2 = 2-(methylsulfinyl)benzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1287 molecular_function owl:Class GO:0033919 biolink:NamedThing glucan 1,3-alpha-glucosidase activity Catalysis of the hydrolysis of terminal (1->3)-alpha-D-glucosidic links in 1,3-alpha-D-glucans. tmpzr1t_l9r_go_relaxed.owl 1,3-alpha-D-glucan 3-glucohydrolase activity|exo-1,3-alpha-glucanase activity Reactome:R-HSA-9694364|Reactome:R-HSA-9683663|Reactome:R-HSA-532667|Reactome:R-HSA-548890|EC:3.2.1.84|MetaCyc:3.2.1.84-RXN molecular_function owl:Class GO:0046429 biolink:NamedThing 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase activity|(E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:oxidized ferredoxin oxidoreductase activity|(E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase activity|1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase activity EC:1.17.7.1|KEGG_REACTION:R08689|MetaCyc:RXN0-882|RHEA:26119 molecular_function owl:Class GO:0042621 biolink:NamedThing poly(3-hydroxyalkanoate) biosynthetic process The chemical reactions and pathways resulting in the formation of poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria. tmpzr1t_l9r_go_relaxed.owl PHA biosynthesis|PHA biosynthetic process|poly(3-hydroxyalkanoate) biosynthesis|poly(3-hydroxyalkanoate) synthesis|poly(3-hydroxyalkanoate) formation|poly(3-hydroxyalkanoate) anabolism biological_process owl:Class GO:0010267 biolink:NamedThing production of ta-siRNAs involved in RNA interference Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. tmpzr1t_l9r_go_relaxed.owl RNA interference, production of ta-siRNAs biological_process owl:Class GO:0106389 biolink:NamedThing ecdysteroid 22-kinase activity Catalysis of the reaction: an ecdysteroid + ATP = an ecdysteroid 22-phosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14755 hjd 2021-07-13T14:37:23Z molecular_function owl:Class GO:0008496 biolink:NamedThing mannan endo-1,6-alpha-mannosidase activity Catalysis of the random hydrolysis of (1->6)-alpha-D-mannosidic linkages in unbranched (1->6)-mannans. tmpzr1t_l9r_go_relaxed.owl mannan endo-1,6-beta-mannosidase activity|endo-alpha-D-mannosidase activity|exo-1,6-beta-mannanase activity|1,6-alpha-D-mannan mannanohydrolase activity|endo-1,6-beta-mannanase activity|1,6-beta-D-mannan mannanohydrolase activity|endo-alpha-1->6-D-mannanase activity Reactome:R-HSA-6799581|MetaCyc:3.2.1.101-RXN|EC:3.2.1.101 molecular_function owl:Class GO:0035885 biolink:NamedThing exochitinase activity Catalysis of the hydrolysis of terminal 1,4-beta-linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, exochitinases progressively cleave off two subunits from the reducing or non-reducing ends of the chitin chain. tmpzr1t_l9r_go_relaxed.owl RHEA:50672|MetaCyc:RXN-12309 bf 2011-06-08T11:13:58Z molecular_function owl:Class GO:0031249 biolink:NamedThing denatured protein binding Binding to a denatured protein. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be confused with 'unfolded protein binding ; GO:0051082', which usually refers to proteins that have not yet folded into their active states. Denatured proteins once were in their correct functional conformations, but have become incorrectly folded, and often form aggregates. molecular_function owl:Class GO:0018508 biolink:NamedThing cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase activity Catalysis of the reaction: cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate + NAD+ = catechol + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl benzoate cis-diol dehydrogenase activity UM-BBD_enzymeID:e0219 molecular_function owl:Class GO:0009588 biolink:NamedThing UV-A, blue light phototransduction The sequence of reactions within a cell required to convert absorbed photons from UV-A or blue light into a molecular signal; the UV-A, blue light range is defined as having a wavelength within the range of 315 to 400 nm. tmpzr1t_l9r_go_relaxed.owl violet-sensitive opsin|blue-sensitive opsin|short-wave-sensitive opsin biological_process owl:Class GO:1990140 biolink:NamedThing MPT synthase complex A heterodimeric protein complex which catalyses sulfur transfer from the sulfur carrier subunit of MPT synthase to precursor Z to synthesize MPT as part of molybdopterin cofactor (Moco) biosynthesis. In E. coli the subunits are MoaE and MoaD; in human, MOCS2B and MOCS2A. Moco biosynthesis and its constituent molecules are evolutionarily conserved. tmpzr1t_l9r_go_relaxed.owl molybdopterin cofactor (Moco) biosynthesis sulfurtransferase complex pr 2013-07-11T08:32:29Z cellular_component owl:Class GO:0102141 biolink:NamedThing [chondroitin sulfate]-D-glucuronyl 2-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + [chondroitin-sulfate]-beta-D-glucuronate = adenosine 3',5'-bismonophosphate + [chondroitin-sulfate]-2-O-sulfo-beta-D-glucuronate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11560 molecular_function owl:Class GO:0004587 biolink:NamedThing ornithine-oxo-acid transaminase activity Catalysis of the reaction: L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid. tmpzr1t_l9r_go_relaxed.owl ornithine-oxo-acid aminotransferase activity|L-ornithine:alpha-ketoglutarate delta-aminotransferase activity|ornithine--ketoglutarate aminotransferase activity|ornithine--alpha-ketoglutarate aminotransferase activity|ornithine--keto acid transaminase activity|ornithine--oxo-acid transaminase activity|GabT|ornithine--2-oxoacid aminotransferase activity|ornithine delta-transaminase activity|ornithine--oxo acid aminotransferase activity|ornithine ketoacid aminotransferase activity|L-ornithine 5-aminotransferase activity|ornithine:alpha-oxoglutarate transaminase activity|L-ornithine:2-oxo-acid aminotransferase activity|ornithine--keto acid aminotransferase activity|ornithine transaminase activity|L-ornithine aminotransferase activity|ornithine aminotransferase activity|ornithine 5-aminotransferase activity|OAT Reactome:R-HSA-70654|Reactome:R-HSA-70666|MetaCyc:ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN|RHEA:13877|EC:2.6.1.13 molecular_function owl:Class GO:0061498 biolink:NamedThing intermediate layer of mitotic spindle pole body Structure between the central and outer plaques of the mitotic spindle pole body. tmpzr1t_l9r_go_relaxed.owl dph 2012-12-11T09:17:14Z cellular_component owl:Class GO:0001634 biolink:NamedThing pituitary adenylate cyclase-activating polypeptide receptor activity A G protein-coupled receptor that interacts with pituitary adenylate cyclase-activating polypeptide. tmpzr1t_l9r_go_relaxed.owl PACAP receptor|pituitary adenylate cyclase-activating peptide receptor activity|pituitary adenylyl cyclase activating protein receptor activity|pituitary adenylate cyclase activating polypeptide receptor|pituitary adenylate cyclase activating protein receptor activity GO:0016522 molecular_function owl:Class GO:0097434 biolink:NamedThing succinate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: succinate(out) + H+(out) = succinate(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl succinate:hydrogen symporter activity pr 2012-11-26T18:19:42Z molecular_function owl:Class GO:0033836 biolink:NamedThing flavonol 7-O-beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + a flavonol = UDP + a flavonol 7-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:flavonol 7-O-beta-D-glucosyltransferase activity|UDP-glucose:flavonol 7-O-glucosyltransferase activity MetaCyc:2.4.1.237-RXN|EC:2.4.1.237|RHEA:23164 molecular_function owl:Class GO:1905317 biolink:NamedThing inferior endocardial cushion morphogenesis The developmental process by which an inferior endocardial cushion is generated and organized. tmpzr1t_l9r_go_relaxed.owl ventral endocardial cushion morphogenesis rl 2016-07-12T14:14:56Z biological_process owl:Class GO:0072493 biolink:NamedThing host cell endosome lumen The volume enclosed by the membranes of the host cell endosome. tmpzr1t_l9r_go_relaxed.owl host endosome lumen mah 2010-12-15T11:45:53Z cellular_component owl:Class GO:0018576 biolink:NamedThing catechol 1,2-dioxygenase activity Catalysis of the reaction: catechol + O2 = cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl pyrocatechase activity|catechase activity|pyrocatechol 1,2-dioxygenase activity|catechol:oxygen 1,2-oxidoreductase activity|catechol 1,2-oxygenase activity|CD II|1,2-pyrocatechase activity|catechol-oxygen 1,2-oxidoreductase activity|CD I UM-BBD_enzymeID:e0064|MetaCyc:CATECHOL-12-DIOXYGENASE-RXN|EC:1.13.11.1|RHEA:23852 molecular_function owl:Class GO:0033134 biolink:NamedThing ubiquitin activating enzyme binding Binding to a ubiquitin activating enzyme, any of the E1 proteins. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071753 biolink:NamedThing IgM immunoglobulin complex A protein complex composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and in its circulating form complexed with J chain in polymeric forms. An IgM immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. tmpzr1t_l9r_go_relaxed.owl Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. mah 2010-03-24T01:44:53Z cellular_component owl:Class GO:0043224 biolink:NamedThing nuclear SCF ubiquitin ligase complex A ubiquitin ligase complex, located in the nucleus, in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). tmpzr1t_l9r_go_relaxed.owl nuclear SCF complex|nuclear cullin complex|nuclear Skp1/Cul1/F-box protein complex cellular_component owl:Class GO:0043262 biolink:NamedThing adenosine-diphosphatase activity Catalysis of the reaction: ADP + H2O = AMP + phosphate. tmpzr1t_l9r_go_relaxed.owl ATP diphosphohydrolase activity|ATP-diphosphatase activity|ADPase activity|ADPase|adenosine diphosphatase activity MetaCyc:APYRASE-RXN|RHEA:61436 molecular_function owl:Class GO:0017113 biolink:NamedThing dihydropyrimidine dehydrogenase (NADP+) activity Catalysis of the reaction: 5,6-dihydrouracil + NADP+ = uracil + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl dihydrouracil dehydrogenase (NADP)|DHU dehydrogenase activity|dihydrothymine dehydrogenase activity|dehydrogenase, dihydrouracil (nicotinamide adenine dinucleotide phosphate)|DPD|dihydrouracil dehydrogenase (NADP+) activity|5,6-dihydrouracil:NADP+ 5-oxidoreductase activity|4,5-dihydrothymine: oxidoreductase activity|hydropyrimidine dehydrogenase activity|DHPDH|dihydropyrimidine dehydrogenase activity MetaCyc:1.3.1.2-RXN|Reactome:R-HSA-73585|EC:1.3.1.2|Reactome:R-HSA-73616|RHEA:18093 molecular_function owl:Class GO:0047306 biolink:NamedThing D-methionine-pyruvate transaminase activity Catalysis of the reaction: D-methionine + pyruvate = 4-methylthio-2-oxobutanoate + L-alanine. tmpzr1t_l9r_go_relaxed.owl D-methionine transaminase activity|D-methionine:pyruvate aminotransferase activity|D-methionine--pyruvate aminotransferase activity|D-methionine aminotransferase activity|D-methionine-pyruvate aminotransferase activity RHEA:23836|EC:2.6.1.41|MetaCyc:2.6.1.41-RXN|KEGG_REACTION:R03001 molecular_function owl:Class GO:0032287 biolink:NamedThing peripheral nervous system myelin maintenance The process in which the structure and material content of mature peripheral nervous system myelin is kept in a functional state. tmpzr1t_l9r_go_relaxed.owl myelin maintenance in peripheral nervous system biological_process owl:Class GO:0033907 biolink:NamedThing beta-D-fucosidase activity Catalysis of the hydrolysis of terminal non-reducing beta-D-fucose residues in beta-D-fucosides. tmpzr1t_l9r_go_relaxed.owl beta-fucosidase activity|beta-D-fucoside fucohydrolase activity MetaCyc:3.2.1.38-RXN|EC:3.2.1.38 molecular_function owl:Class GO:1990731 biolink:NamedThing UV-damage excision repair, DNA incision A process that results in the endonucleolytic cleavage of the damaged strand of DNA immediately 5' of a UV-induced damage site, and is the first part of a DNA repair process that acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs). tmpzr1t_l9r_go_relaxed.owl DNA incision involved in UVER|DNA incision involved in alternative excision repair|DNA incision involved in AER|UV-damaged DNA endonuclease-dependent excision repair, DNA incision|UVDE-dependent excision repair, DNA incision|DNA incision involved in UVDE-dependent excision repair|DNA incision involved in UV-damaged DNA endonuclease-dependent excision repair|DNA incision involved in UV-damage excision repair|nucleic acid cleavage involved in UV-damage excision repair|alternative excision repair, DNA incision mah 2015-04-21T15:09:04Z biological_process owl:Class GO:0072347 biolink:NamedThing response to anesthetic Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anesthetic stimulus. An anesthetic is a substance that causes loss of feeling, awareness, or sensation. tmpzr1t_l9r_go_relaxed.owl response to anaesthetic mah 2010-11-10T01:26:18Z biological_process owl:Class GO:0102039 biolink:NamedThing alkylhydroperoxide reductase activity Catalysis of the reaction: H2O + NAD + an alcohol <=> NADH + H+ + an organic hydroperoxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:R4-RXN|EC:1.11.1.26 molecular_function owl:Class GO:0070913 biolink:NamedThing Ddb1-Wdr21 complex A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Wdr21 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases. tmpzr1t_l9r_go_relaxed.owl mah 2009-09-09T03:47:54Z cellular_component owl:Class GO:1990084 biolink:NamedThing DnaA-Dps complex A protein complex that negatively regulates strand-opening at the origin of replication, thereby interfering with replication initiation. This complex is thought to be involved in the regulation of replication under oxidative stress conditions. In E. coli, this complex is composed of DnaA and Dps. tmpzr1t_l9r_go_relaxed.owl bhm 2013-04-30T11:50:17Z cellular_component owl:Class GO:0102489 biolink:NamedThing GTP phosphohydrolase activity Catalysis of the reaction: GTP + 2 H2O = GMP + 2 hydrogenphosphate + 2 H+. tmpzr1t_l9r_go_relaxed.owl EC:3.6.1.5|MetaCyc:RXN-14201 molecular_function owl:Class GO:0008742 biolink:NamedThing L-ribulose-phosphate 4-epimerase activity Catalysis of the reaction: L-ribulose 5-phosphate = D-xylulose 5-phosphate. tmpzr1t_l9r_go_relaxed.owl L-ribulose-5-phosphate 4-epimerase|L-Ru5P|L-ru5P activity|phosphoribulose isomerase activity|AraD|ribulose phosphate 4-epimerase activity|L-ribulose 5-phosphate 4-epimerase activity KEGG_REACTION:R05850|EC:5.1.3.4|RHEA:22368|MetaCyc:RIBULPEPIM-RXN molecular_function owl:Class GO:0002039 biolink:NamedThing p53 binding Binding to one of the p53 family of proteins. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004047 biolink:NamedThing aminomethyltransferase activity Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein. tmpzr1t_l9r_go_relaxed.owl T-protein|tetrahydrofolate aminomethyltransferase activity|glycine-cleavage system T-protein activity|S-aminomethyldihydrolipoylprotein:(6S)-tetrahydrofolate aminomethyltransferase (ammonia-forming) activity|protein-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase (ammonia-forming) activity|protein-8-S-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase (ammonia-forming) activity|glycine synthase activity Reactome:R-HSA-5693977|RHEA:16945|MetaCyc:GCVT-RXN|EC:2.1.2.10 molecular_function owl:Class GO:0008763 biolink:NamedThing UDP-N-acetylmuramate-L-alanine ligase activity Catalysis of the reaction: L-alanine + ATP + UDP-N-acetylmuramate = ADP + 2 H(+) + phosphate + UDP-N-acetylmuramoyl-L-alanine. tmpzr1t_l9r_go_relaxed.owl UDP-MurNAc:L-alanine ligase activity|UDPMurNAc-L-alanine synthetase activity|UDP-N-acetylmuramyl:L-alanine ligase activity|UDP-N-acetylmuramate:L-alanine ligase (ADP-forming)|uridine-diphosphate-N-acetylmuramate:L-alanine ligase activity|uridine diphosphate N-acetylmuramate:L-alanine ligase activity|uridine diphospho-N-acetylmuramoylalanine synthetase activity|UDP-acetylmuramyl-L-alanine synthetase activity|UDP-N-acetylmuramoylalanine synthetase activity|UDP-N-acetylmuramoyl-L-alanine synthetase activity|L-Ala ligase activity|uridine 5'-diphosphate-N-acetylmuramyl-L-alanine synthetase activity|MurC synthetase activity|alanine-adding enzyme activity|L-alanine-adding enzyme activity RHEA:23372|EC:6.3.2.8|MetaCyc:UDP-NACMUR-ALA-LIG-RXN|KEGG_REACTION:R03193 molecular_function owl:Class GO:0033781 biolink:NamedThing cholesterol 24-hydroxylase activity Catalysis of the reaction: cholesterol + H(+) + NADPH + O(2) = (24S)-24-hydroxycholesterol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl cholesterol 24S-hydroxylase activity|cholesterol 24-monooxygenase activity|cytochrome P450 46A1|CYP46|CYP46A1|cholesterol,NADPH:oxygen oxidoreductase (24-hydroxylating) activity KEGG_REACTION:R07207|Reactome:R-HSA-192061|RHEA:22716|EC:1.14.14.25|MetaCyc:1.14.13.98-RXN molecular_function owl:Class GO:0008127 biolink:NamedThing quercetin 2,3-dioxygenase activity Catalysis of the reaction: H(+) + O(2) + quercetin = 2-(3,4-dihydroxybenzoyloxy)-4,6-dihydroxybenzoate + CO. tmpzr1t_l9r_go_relaxed.owl quercetin:oxygen 2,3-oxidoreductase (decyclizing)|flavonol 2,4-oxygenase activity|quercetinase activity Reactome:R-HSA-8953398|RHEA:15381|EC:1.13.11.24|KEGG_REACTION:R02156|MetaCyc:QUERCETIN-23-DIOXYGENASE-RXN|UM-BBD_reactionID:r0891 molecular_function owl:Class GO:0043765 biolink:NamedThing T/G mismatch-specific endonuclease activity Catalysis of the repair of T/G mismatches arising from deamination of 5-methylcytosine in DNA by nicking double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the mismatched thymidine residue. The incision is mismatch-dependent and strand-specific, in favor of the G-containing strand. The incision serves as a starting point for subsequent excision repair by DNA polymerase I, which excises thymidine and reinserts cytidine. tmpzr1t_l9r_go_relaxed.owl Vsr mismatch endonuclease|V.EcoKDcm|DNA mismatch endonuclease|very short patch repair protein molecular_function owl:Class GO:0099006 biolink:NamedThing viral entry via permeabilization of endosomal membrane The entry of a non-enveloped virus into a host eukaryotic cell, following endocytosis, via permeabilization of the endosomal membrane by membrane penetration protein(s) associated with the viral capsid. In some cases, viral membrane-penetration protein require first to be activated to display its membrane penetrating activity. Activation can be due to receptor binding or the acidic pH of the endosomal lumen. tmpzr1t_l9r_go_relaxed.owl viral penetration via permeabilization of host membrane VZ:985 biological_process owl:Class GO:0021902 biolink:NamedThing commitment of neuronal cell to specific neuron type in forebrain The commitment of neuronal precursor cells to become specialized types of neurons in the forebrain. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0098601 biolink:NamedThing selenomethionine adenosyltransferase activity Catalysis of the reaction: ATP + L-Selenomethionine + H2O => Orthophosphate + Diphosphate + Se-Adenosylselenomethionine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408551|RHEA:31211 dos 2014-04-15T15:15:03Z molecular_function owl:Class GO:0048761 biolink:NamedThing collenchyma cell differentiation The process in which a relatively unspecialized cell acquires specialized features of a collenchyma cell. This is a plant cell in which the primary cell walls are unevenly thickened, with most thickening occurring at the cell corners. Cells are living and able to grow, they are elongated, and lignin and secondary walls absent. Collenchyma cells make up collenchyma tissue which acts as a supporting tissue in growing shoots, leaves and petioles. This tissue is often arranged in cortical ribs, as seen prominently in celery and rhubarb petioles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050277 biolink:NamedThing sedoheptulokinase activity Catalysis of the reaction: ATP + sedoheptulose = ADP + 2 H(+) + sedoheptulose 7-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:sedoheptulose 7-phosphotransferase activity|heptulokinase activity|sedoheptulokinase (phosphorylating) Reactome:R-HSA-8959719|KEGG_REACTION:R01844|MetaCyc:SEDOHEPTULOKINASE-RXN|EC:2.7.1.14|RHEA:23844 molecular_function owl:Class GO:0070282 biolink:NamedThing pyridoxine binding Binding to pyridoxine, 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol, a form of vitamin B6. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034813 biolink:NamedThing benzo(a)pyrene 7,8-dioxygenase activity Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-cis-7,8-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1137 molecular_function owl:Class GO:0140074 biolink:NamedThing cardiac endothelial to mesenchymal transition A transition where a cardiac endothelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. Endocardial cells (specialized endothelial cells that line the heart) undergo EndMT, and give rise to mesenchymal cells necessary for proper heart development. EndMT, specifically generates valve progenitor cells that give rise to the mitral and tricuspid valves. EndMT also contributes to endocardial cushion formation, as well as to generation of cardiac fibroblasts and smooth muscle cells, but not cardiac myocytes. tmpzr1t_l9r_go_relaxed.owl EndMT|EndoMT pg 2017-07-21T09:39:49Z biological_process owl:Class GO:0004792 biolink:NamedThing thiosulfate sulfurtransferase activity Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate. tmpzr1t_l9r_go_relaxed.owl rhodanase activity|thiosulphate sulphurtransferase activity|thiosulfate cyanide transsulfurase activity|rhodanese activity|thiosulfate:cyanide sulfurtransferase activity|thiosulfate thiotransferase activity RHEA:16881|KEGG_REACTION:R01931|EC:2.8.1.1|MetaCyc:THIOSULFATE-SULFURTRANSFERASE-RXN|Reactome:R-HSA-9013198 molecular_function owl:Class GO:0048720 biolink:NamedThing posterior cibarial plate morphogenesis The process in which the anatomical structures of the posterior cibarial plate are generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070934 biolink:NamedThing CRD-mediated mRNA stabilization An mRNA stabilization process in which one or more RNA-binding proteins associate with a sequence in the open reading frame called the coding region instability determinant (CRD). tmpzr1t_l9r_go_relaxed.owl coding region determinant-mediated mRNA stabilization mah 2009-09-21T02:57:06Z biological_process owl:Class GO:0001896 biolink:NamedThing autolysis A programmed cell death process observed in bacteria and filamentous fungi and leading to spontaneous death by lysis. Examples are lysis of the mother cell during sporulation of Bacillus subtilis and self-degradation of fungal cells in Aspergillus nidulans. Autolysis is also involved in bacterial biofilm formation. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Autolysis biological_process owl:Class GO:0098617 biolink:NamedThing adenylylselenate kinase activity Catalysis of the reaction: ATP + adenylylselenate => ADP + 3'-phosphoadenylylselenate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408540 molecular_function owl:Class GO:0009836 biolink:NamedThing fruit ripening, climacteric A fruit ripening process that involves a burst of respiration and ethylene (ethene) evolution at the onset. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045238 biolink:NamedThing CXCR2 chemokine receptor binding Binding to a CXCR2 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CXCR2 chemokine receptor ligand molecular_function owl:Class GO:0000413 biolink:NamedThing protein peptidyl-prolyl isomerization The modification of a protein by cis-trans isomerization of a proline residue. tmpzr1t_l9r_go_relaxed.owl protein proline isomerization biological_process owl:Class GO:0016871 biolink:NamedThing cycloartenol synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = cycloartenol. tmpzr1t_l9r_go_relaxed.owl 2,3-oxidosqualene-cycloartenol cyclase activity|(S)-2,3-epoxysqualene mutase (cyclizing, cycloartenol-forming)|2,3-epoxysqualene cycloartenol-cyclase activity|2,3-epoxysqualene--cycloartenol cyclase activity|oxidosqualene:cycloartenol cyclase activity|squalene-2,3-epoxide-cycloartenol cyclase activity MetaCyc:CYCLOARTENOL-SYNTHASE-RXN|KEGG_REACTION:R03200|EC:5.4.99.8|RHEA:21308 molecular_function owl:Class GO:0034474 biolink:NamedThing U2 snRNA 3'-end processing Any process involved in forming the mature 3' end of a U2 snRNA molecule. tmpzr1t_l9r_go_relaxed.owl U2 snRNA 3' end processing biological_process owl:Class GO:0016275 biolink:NamedThing [cytochrome c]-arginine N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + (cytochrome c)-arginine = S-adenosyl-L-homocysteine + (cytochrome c)-N(omega)-methyl-arginine. tmpzr1t_l9r_go_relaxed.owl cytochrome c-arginine N-methyltransferase activity|S-adenosyl-L-methionine:cytochrome c-arginine nomega-methyltransferasea|S-adenosyl-L-methionine:cytochrome c-arginine omega-N-methyltransferasea RHEA:21872|EC:2.1.1.124|MetaCyc:2.1.1.124-RXN molecular_function owl:Class GO:0097718 biolink:NamedThing disordered domain specific binding Binding to a disordered domain of a protein. tmpzr1t_l9r_go_relaxed.owl disordered protein domain specific binding pr 2016-08-23T16:42:51Z molecular_function owl:Class GO:0032143 biolink:NamedThing single thymine insertion binding Binding to a double-stranded DNA region containing a single thymine insertion or a deletion that results in an unpaired thymine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0090008 biolink:NamedThing hypoblast development The process whose specific outcome is the progression of the hypoblast over time, from its formation to the mature structure. The hypoblast is a tissue formed from the inner cell mass that lies beneath the epiblast. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T10:25:54Z biological_process owl:Class GO:1901370 biolink:NamedThing response to glutathione Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glutathione stimulus. tmpzr1t_l9r_go_relaxed.owl mah 2012-09-21T13:59:24Z biological_process owl:Class GO:0048060 biolink:NamedThing negative gravitaxis The directed movement of a motile cell or organism away from the source of gravity. tmpzr1t_l9r_go_relaxed.owl negative gravitactic behavior|negative taxis in response to gravitytaxis in response to gravitational stimulus|negative geotactic behavior|negative geotactic behaviour|negative taxis in response to gravity|negative gravitactic behaviour GO:0048063 biological_process owl:Class GO:0021645 biolink:NamedThing vagus nerve structural organization The process that contributes to the act of creating the structural organization of the vagus nerve. This process pertains to the physical shaping of a rudimentary structure. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis. tmpzr1t_l9r_go_relaxed.owl CN X structural organization|vagus nerve structural organisation biological_process owl:Class GO:0047782 biolink:NamedThing coniferin beta-glucosidase activity Catalysis of the reaction: H2O + coniferin = D-glucose + coniferol. tmpzr1t_l9r_go_relaxed.owl coniferin b-glucosidase activity|coniferin-hydrolyzing beta-glucosidase activity|coniferin beta-D-glucosidase activity EC:3.2.1.126|MetaCyc:CONIFERIN-BETA-GLUCOSIDASE-RXN|RHEA:12252 molecular_function owl:Class GO:0016784 biolink:NamedThing 3-mercaptopyruvate sulfurtransferase activity Catalysis of the reaction: 3-mercaptopyruvate + cyanide = pyruvate + thiocyanate. tmpzr1t_l9r_go_relaxed.owl 3-mercaptopyruvate:cyanide sulfurtransferase activity|3-mercaptopyruvate sulphurtransferase activity|beta-mercaptopyruvate sulfurtransferase activity|mercaptopyruvate sulfurtransferase activity Reactome:R-HSA-9034756|Reactome:R-HSA-9013533|EC:2.8.1.2|Reactome:R-HSA-9013471|RHEA:21740|Reactome:R-HSA-9012721|MetaCyc:MERCAPYSTRANS-RXN molecular_function owl:Class GO:0047311 biolink:NamedThing 1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol transaminase activity Catalysis of the reaction: 1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol + pyruvate = 1D-1-guanidino-1-deoxy-3-dehydro-scyllo-inositol + L-alanine. tmpzr1t_l9r_go_relaxed.owl 1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol:pyruvate aminotransferase activity|1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol aminotransferase activity|L-alanine-N-amidino-3-(or 5-)keto-scyllo-inosamine transaminase activity|guanidinoaminodideoxy-scyllo-inositol-pyruvate aminotransferase activity KEGG_REACTION:R03502|MetaCyc:2.6.1.56-RXN|EC:2.6.1.56|RHEA:15497 molecular_function owl:Class GO:0102979 biolink:NamedThing homofuraneol oxidoreductase activity Catalysis of the reaction: homofuraneol + NADP <=> (2E)-2-ethylidene-4-hydroxy-5-methyl-3(2H)-furanone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9564|RHEA:53944 molecular_function owl:Class GO:0060305 biolink:NamedThing regulation of cell diameter Any process that modulates the diameter of a cell, the length of a line segment that crosses through the center of a circular section through a cell. tmpzr1t_l9r_go_relaxed.owl regulation of cell width biological_process owl:Class GO:1901025 biolink:NamedThing ripoptosome assembly involved in extrinsic apoptotic signaling pathway The aggregation, arrangement and bonding together of ripoptosome components leading to apoptosis via the extrinsic apoptotic signaling pathway. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-19T08:49:33Z biological_process owl:Class GO:0042163 biolink:NamedThing interleukin-12 beta subunit binding Binding to the beta subunit of interleukin-12. tmpzr1t_l9r_go_relaxed.owl NKSFp40 binding|CLMFp40 binding|IL-12p40 binding|IL-12B binding molecular_function owl:Class GO:0004013 biolink:NamedThing adenosylhomocysteinase activity Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine. tmpzr1t_l9r_go_relaxed.owl S-adenosylhomocysteinase activity|S-adenosylhomocysteine hydrolase activity|S-adenosyl-L-homocysteine hydrolase activity|SAHase activity|AdoHcyase activity|adenosylhomocysteine hydrolase activity|S-adenosylhomocysteine synthase activity RHEA:21708|EC:3.3.1.1|Reactome:R-HSA-5579084|MetaCyc:ADENOSYLHOMOCYSTEINASE-RXN|Reactome:R-HSA-174401 molecular_function owl:Class GO:0039704 biolink:NamedThing viral translational shunt A viral translation initiation mechanism where ribosomes are loaded onto viral mRNA at the 5'-cap structure and start scanning for a short distance before by-passing the large internal leader region and initiating at a downstream start site. tmpzr1t_l9r_go_relaxed.owl ribosomal shunt initiation pathway VZ:608 This term is intended to annotate gene products involved in the process of viral translational shunt, not viral proteins produced by this translation process. bf 2013-11-21T17:08:40Z biological_process owl:Class GO:0031802 biolink:NamedThing type 5 metabotropic glutamate receptor binding Binding to a type 5 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 5 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0102663 biolink:NamedThing gibberellin A34,2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A34 + 2-oxoglutarate + O2 <=> H+ + gibberellin A34-catabolite + succinate + carbon dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-292 molecular_function owl:Class GO:1901930 biolink:NamedThing alpha-copaene catabolic process The chemical reactions and pathways resulting in the breakdown of alpha-copaene. tmpzr1t_l9r_go_relaxed.owl alpha-copaene degradation|alpha-copaene breakdown|alpha-copaene catabolism ms 2013-02-18T14:54:43Z biological_process owl:Class GO:0015254 biolink:NamedThing glycerol channel activity Enables the facilitated diffusion of glycerol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-432049|Reactome:R-HSA-507869|Reactome:R-HSA-432074|Reactome:R-HSA-507871|RHEA:29675 molecular_function owl:Class GO:0102251 biolink:NamedThing all-trans-beta-apo-10'-carotenal cleavage oxygenase activity Catalysis of the reaction: 10'-apo-beta-carotenal + O2 <=> 13-apo-beta-carotenone + 4-methylocta-2,4,6-trienedial. tmpzr1t_l9r_go_relaxed.owl RHEA:26401|EC:1.13.11.70|MetaCyc:RXN-12393 molecular_function owl:Class GO:0038060 biolink:NamedThing nitric oxide-cGMP-mediated signaling pathway Any intracellular signal transduction in which the signal is passed on within the cell by nitric oxide (NO) activating soluble guanylyl cyclase (sGC). Includes synthesis of nitric oxide, guanylyl cyclase activity, and downstream effectors that further transmit the signal within the cell following activation by cGMP. tmpzr1t_l9r_go_relaxed.owl canonical nitric oxide signaling|classical nitric oxide signaling|nitric oxide-cGMP-mediated signalling pathway|NO-cGMP signaling pathway bf 2012-01-10T05:32:39Z biological_process owl:Class GO:0072518 biolink:NamedThing Rho-dependent protein serine/threonine kinase activity Rho GTPase-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. tmpzr1t_l9r_go_relaxed.owl ROCK kinase activity|Rho-associated protein kinase activity This reaction requires binding of the GTPase Rho. mah 2010-12-22T11:07:29Z molecular_function owl:Class GO:0002167 biolink:NamedThing VRK3/VHR/ERK complex A ternary complex consisting of VRK3, VHR (Dusp3), and ERK1 (Mapk3) existing in neuronal cells, and is involved in regulation of the ERK signaling pathway. tmpzr1t_l9r_go_relaxed.owl hjd 2010-03-04T01:15:05Z cellular_component owl:Class GO:0047816 biolink:NamedThing D-arabinose 1-dehydrogenase (NAD+) activity Catalysis of the reaction: D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH. tmpzr1t_l9r_go_relaxed.owl D-arabinose:NAD+ 1-oxidoreductase activity|NAD-pentose-dehydrogenase activity|arabinose(fucose)dehydrogenase activity RHEA:20457|EC:1.1.1.116|MetaCyc:D-ARABINOSE-1-DEHYDROGENASE-RXN molecular_function owl:Class GO:0110094 biolink:NamedThing polyphosphate-mediated signaling Any process that mediates the transfer of information from one cell to another using polyphosphate as the signal. tmpzr1t_l9r_go_relaxed.owl polyphosphate signaling kmv 2018-02-15T16:42:30Z biological_process owl:Class GO:0010275 biolink:NamedThing NAD(P)H dehydrogenase complex assembly The aggregation, arrangement and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool. tmpzr1t_l9r_go_relaxed.owl NAD(P)H dehydrogenase complex (plastoquinone) assembly biological_process owl:Class GO:1904401 biolink:NamedThing cellular response to Thyroid stimulating hormone Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroid stimulating hormone stimulus. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-23T20:57:59Z biological_process owl:Class GO:0071082 biolink:NamedThing alpha9-beta1 integrin-tenascin complex A protein complex that consists of an alpha9-beta1 integrin complex bound to the extracellular matrix protein tenascin. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-TNC complex mah 2009-11-06T04:43:58Z cellular_component owl:Class GO:0021787 biolink:NamedThing chemorepulsion of branchiomotor neuron axon in neural tube The process in which a branchiomotor neuron growth cone in the neural tube is directed to a specific target site in the neural tube in response to a repulsive chemical cue. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis of branchiomotor neuron axon in neural tube biological_process owl:Class GO:0016630 biolink:NamedThing protochlorophyllide reductase activity Catalysis of the reaction: chlorophyllide a + NADP+ = protochlorophyllide + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH-protochlorophyllide reductase activity|protochlorophyllide oxidoreductase activity|chlorophyllide-a:NADP+ 7,8-oxidoreductase activity|NADPH2-protochlorophyllide oxidoreductase activity|NADPH-protochlorophyllide oxidoreductase activity|protochlorophyllide photooxidoreductase activity MetaCyc:RXN1F-10|RHEA:11132|EC:1.3.1.33 molecular_function owl:Class GO:0031870 biolink:NamedThing thromboxane A2 receptor binding Binding to a thromboxane A2 receptor. tmpzr1t_l9r_go_relaxed.owl prostanoid TP receptor binding|thromboxane A2 receptor ligand molecular_function owl:Class GO:0050589 biolink:NamedThing leucocyanidin oxygenase activity Catalysis of the reaction: leucocyanidin + 2-oxoglutarate + O2 = cis- or trans-dihydroquercetin + succinate + CO2 + 2 H2O. tmpzr1t_l9r_go_relaxed.owl leucoanthocyanidin hydroxylase|leucoanthocyanidin dioxygenase activity|leucocyanidin,2-oxoglutarate:oxygen oxidoreductase activity|anthocyanidin synthase activity MetaCyc:RXN-602|EC:1.14.20.4 GO:0045432 molecular_function owl:Class GO:0102892 biolink:NamedThing betanidin 5-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + betanidin <=> H+ + betanin + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8479 molecular_function owl:Class GO:0075325 biolink:NamedThing spore dispersal Any process in which an organism disseminates its spores. tmpzr1t_l9r_go_relaxed.owl spore dispersal on or near host during symbiotic interaction|passive spore dispersal on or near host|active spore dispersal on or near host|active spore dispersal on or near host during symbiotic interaction|spore dispersal on or near host https://github.com/geneontology/go-ontology/issues/18823 GO:0075327|GO:0075326 biological_process owl:Class GO:0052656 biolink:NamedThing L-isoleucine transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoic acid + L-glutamic acid. tmpzr1t_l9r_go_relaxed.owl L-isoleucine aminotransferase activity MetaCyc:BRANCHED-CHAINAMINOTRANSFERILEU-RXN|RHEA:24801|KEGG_REACTION:R02199|EC:2.6.1.42 molecular_function owl:Class GO:0086040 biolink:NamedThing sodium:proton antiporter activity involved in regulation of cardiac muscle cell membrane potential Enables the transfer of a solute or solutes from one side of a cardiac muscle cell membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). This transfer contributes to the regulation of the cardiac muscle cell plasma membrane potential. tmpzr1t_l9r_go_relaxed.owl sodium:hydrogen antiporter activity involved in regulation of cardiac muscle cell membrane potential tb 2011-11-11T03:33:44Z molecular_function owl:Class GO:0004514 biolink:NamedThing nicotinate-nucleotide diphosphorylase (carboxylating) activity Catalysis of the reaction: CO(2) + diphosphate + nicotinate D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + 2 H(+) + quinolinate. tmpzr1t_l9r_go_relaxed.owl quinolinate phosphoribosyltransferase (decarboxylating) activity|quinolinic acid phosphoribosyltransferase activity|NAD pyrophosphorylase activity|QAPRTase activity|nicotinate mononucleotide pyrophosphorylase (carboxylating)|quinolinic phosphoribosyltransferase activity|nicotinate-nucleotide pyrophosphorylase (carboxylating) activity|nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase (carboxylating) EC:2.4.2.19|RHEA:12733|Reactome:R-HSA-197268|MetaCyc:QUINOPRIBOTRANS-RXN|KEGG_REACTION:R03348 molecular_function owl:Class GO:0102929 biolink:NamedThing lachrymatory factor synthase activity Catalysis of the reaction: 1-propenylsulfenate = propanethiol S-oxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8911 molecular_function owl:Class GO:0042037 biolink:NamedThing peptidyl-histidine methylation, to form pros-methylhistidine The methylation of peptidyl-L-histidine to form peptidyl-L-3'-methyl-L-histidine (otherwise known as pi-methylhistidine, pros-methylhistidine). tmpzr1t_l9r_go_relaxed.owl peptidyl-histidine pros-methylation RESID:AA0073 GO:0042260 biological_process owl:Class GO:0106410 biolink:NamedThing box C/D RNA 5'-end processing Any process involved in forming the mature 5' end of a box C/D RNA molecule. tmpzr1t_l9r_go_relaxed.owl hjd 2021-11-02 14:11:42+00:00 biological_process owl:Class GO:0050347 biolink:NamedThing trans-octaprenyltranstransferase activity Catalysis of the reaction: all-trans-octaprenyl diphosphate + isopentenyl diphosphate = all-trans-nonaprenyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl all-trans-nonaprenyl-diphosphate synthase activity|(E)-octaprenyl-diphosphate:isopentenyl-diphosphate octaprenyltranstransferase activity|solanesyl pyrophosphate synthetase activity|nonaprenyl pyrophosphate synthetase activity|terpenoidallyltransferase activity|solanesyl-diphosphate synthase activity|polyprenylpyrophosphate synthetase activity|terpenyl pyrophosphate synthetase activity|SPP synthase activity|trans-prenyltransferase activity KEGG_REACTION:R07267|RHEA:11324 molecular_function owl:Class GO:1901102 biolink:NamedThing gramicidin S catabolic process The chemical reactions and pathways resulting in the breakdown of gramicidin S. tmpzr1t_l9r_go_relaxed.owl gramicidin S breakdown|gramicidin S catabolism|gramicidin S degradation yaf 2012-07-11T02:30:52Z biological_process owl:Class GO:1990086 biolink:NamedThing lens fiber cell apoptotic process Any apoptotic process in a lens fiber cell. Lens fiber cells are elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. tmpzr1t_l9r_go_relaxed.owl hjd 2013-05-01T19:09:28Z biological_process owl:Class GO:0090728 biolink:NamedThing negative regulation of brood size Any process that decreases brood size. Brood size is the number of progeny that survive embryogenesis and are cared for at one time. tmpzr1t_l9r_go_relaxed.owl tb 2016-12-19T15:07:32Z biological_process owl:Class GO:0050199 biolink:NamedThing piperidine N-piperoyltransferase activity Catalysis of the reaction: (E,E)-piperoyl-CoA + piperidine = N-[(E,E)-piperoyl]piperidine + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl piperidine piperoyltransferase activity|piperoyl-CoA:piperidine N-piperoyltransferase activity|(E,E)-piperoyl-CoA:piperidine N-piperoyltransferase activity EC:2.3.1.145|RHEA:14561|KEGG_REACTION:R03994|MetaCyc:PIPERIDINE-N-PIPEROYLTRANSFERASE-RXN molecular_function owl:Class GO:0098031 biolink:NamedThing icosahedral viral capsid, collar A small disk located at the base of some icosahedral virus capsids. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-19T15:01:12Z cellular_component owl:Class GO:0050101 biolink:NamedThing mimosinase activity Catalysis of the reaction: L-mimosine + H(2)O = 3-hydroxy-4H-pyrid-4-one + L-serine. tmpzr1t_l9r_go_relaxed.owl mimosine amidohydrolase activity RHEA:13373|MetaCyc:MIMOSINASE-RXN|KEGG_REACTION:R04350|EC:3.5.1.61 molecular_function owl:Class GO:0047469 biolink:NamedThing 4-carboxymethyl-4-methylbutenolide mutase activity Catalysis of the reaction: 4-carboxymethyl-4-methylbut-2-en-1,4-olide = 4-carboxymethyl-3-methylbut-2-en-1,4-olide. tmpzr1t_l9r_go_relaxed.owl 4-methyl-3-enelactone methyl isomerase activity|4-methyl-2-enelactone isomerase activity|4-carboxymethyl-4-methylbut-2-en-1,4-olide methylmutase activity|4-methylmuconolactone methylisomerase activity|4-methyl-2-enelactone methyl-isomerase activity MetaCyc:5.4.99.14-RXN|KEGG_REACTION:R04510|RHEA:19237|EC:5.4.99.14 molecular_function owl:Class GO:0048571 biolink:NamedThing long-day photoperiodism Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that exceeds a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 hours minus the critical day length. tmpzr1t_l9r_go_relaxed.owl response to long-day|response to long-day photoperiod|short-night photoperiodism|response to short-night biological_process owl:Class GO:0052613 biolink:NamedThing canthaxanthin 3-hydroxylase activity Catalysis of the reaction: canthaxanthin + a reduced electron acceptor + oxygen = adonirubin + an oxidized electron acceptor + H2O. tmpzr1t_l9r_go_relaxed.owl carotene beta-ring hydroxylase activity|beta-ring carotenoid 3-hydroxylase activity|beta-carotene hydroxylase activity MetaCyc:RXN-8186 molecular_function owl:Class GO:0004141 biolink:NamedThing dethiobiotin synthase activity Catalysis of the reaction: 7,8-diaminononanoate + ATP + CO(2) = ADP + dethiobiotin + 4 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl desthiobiotin synthase activity|DTB synthetase activity|7,8-diaminononanoate:carbon-dioxide cyclo-ligase (ADP-forming) RHEA:15805|MetaCyc:DETHIOBIOTIN-SYN-RXN|KEGG_REACTION:R03182|EC:6.3.3.3 molecular_function owl:Class GO:0062065 biolink:NamedThing box H/ACA snoRNP complex binding Binding to a box H/ACA snoRNP complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:03:43Z molecular_function owl:Class GO:0018733 biolink:NamedThing 3,4-dihydrocoumarin hydrolase activity Catalysis of the reaction: 3,4-dihydrocoumarin + H2O = 3-(2-hydroxyphenyl) propionate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0419|EC:3.1.1.35 molecular_function owl:Class GO:0060250 biolink:NamedThing germ-line stem-cell niche homeostasis A homeostatic process involved in the maintenance of an internal steady state within the germ-line stem-cell niche. This includes control of cellular proliferation and death and control of metabolic function that allows the niche to continue to function. A gem-line stem-cell niche is an anatomical structure that regulates how germ-line stem-cells are used and saves them from depletion. tmpzr1t_l9r_go_relaxed.owl maintenance of germ-line stem cell niche|maintenance of germ line stem-cell niche|maintenance of germ-line stem-cell niche|maintenance of germ line stem cell niche|germ-line stem-cell niche maintenance biological_process owl:Class GO:0047750 biolink:NamedThing cholestenol delta-isomerase activity Catalysis of the reaction: 5-alpha-cholest-7-en-3-beta-ol = 5-alpha-cholest-8-en-3-beta-ol. tmpzr1t_l9r_go_relaxed.owl delta7-cholestenol delta7-delta8-isomerase activity|cholestenol D-isomerase activity RHEA:15281|MetaCyc:RXN66-25|EC:5.3.3.5 molecular_function owl:Class GO:0051921 biolink:NamedThing adenosylcobyric acid synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: 4 L-glutamine + adenosylcob(III)yrinate a,c-diamide + 4 ATP + 4 H(2)O = 4 L-glutamate + adenosylcobyrate + 4 ADP + 8 H(+) + 4 phosphate. tmpzr1t_l9r_go_relaxed.owl Ado-cobyric acid synthase [glutamine hydrolyzing] activity|CobQ activity|cobyric acid synthase activity|5'-deoxy-5'-adenosylcobyrinic-acid-a,c-diamide:L-glutamine amido-ligase activity|adenosylcobyric acid synthase (glutamine-hydrolysing) activity|adenosylcobyrinic-acid-a,c-diamide:L-glutamine amido-ligase (ADP-forming) KEGG_REACTION:R05225|MetaCyc:R345-RXN|RHEA:23256|EC:6.3.5.10 molecular_function owl:Class GO:0071933 biolink:NamedThing Arp2/3 complex binding Binding to an Arp2/3 complex, a protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5). tmpzr1t_l9r_go_relaxed.owl mah 2010-09-29T02:48:41Z molecular_function owl:Class GO:0051959 biolink:NamedThing dynein light intermediate chain binding Binding to a light intermediate chain of the dynein complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0017060 biolink:NamedThing 3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-(1,3)-N-acetyl-D-glucosaminyl-R = GDP + beta-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,4)]-N-acetyl-D-glucosaminyl-R. tmpzr1t_l9r_go_relaxed.owl (Le(a))-dependent (alpha-3/4)-fucosyltransferase activity|GDP-L-fucose:3-beta-D-galactosyl-N-acetyl-D-glucosaminyl-R 4I-alpha-L-fucosyltransferase activity|guanosine diphosphofucose-glycoprotein 4-alpha-fucosyltransferase activity|Lewis alpha-(1,3/4)-fucosyltransferase activity|Lewis alpha-(1->3/4)-fucosyltransferase activity|Lewis blood group alpha-(1,3/4)-fucosyltransferase activity|blood group Lewis alpha-4-fucosyltransferase activity|alpha-(1,3/1,4) fucosyltransferase III activity|Lewis(Le) blood group gene-dependent alpha-(1,3/4)-L-fucosyltransferase activity|guanosine diphosphofucose-beta-acetylglucosaminylsaccharide 4-alpha-L-fucosyltransferase activity|alpha-(1,4)-L-fucosyltransferase activity|3-alpha-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|blood-group substance Le(a)-dependent fucosyltransferase activity|Lewis(Le) blood group gene-dependent alpha-(1->3/4)-L-fucosyltransferase activity|alpha-4-L-fucosyltransferase activity|galactoside 3(4)-L-fucosyltransferase activity|FucT-II activity|Lewis blood group alpha-(1->3/4)-fucosyltransferase activity|(Lea)-dependent (alpha-3/4)-fucosyltransferase activity|blood-group substance Lea-dependent fucosyltransferase|alpha-(1->4)-L-fucosyltransferase activity|fuca(1,3)-glycosidic linkage formation|guanosine diphosphofucose-glycoprotein 4-alpha-L-fucosyltransferase activity|GDP-beta-L-fucose:3-beta-D-galactosyl-N-acetyl-D-glucosaminyl-R 4I-alpha-L-fucosyltransferase activity|alpha(1,4)-L-fucosyltransferase activity|beta-acetylglucosaminylsaccharide fucosyltransferase activity|Lewis FT activity Reactome:R-HSA-5693925|MetaCyc:2.4.1.65-RXN|Reactome:R-HSA-9603986|RHEA:23628|EC:2.4.1.65 molecular_function owl:Class GO:0031861 biolink:NamedThing prolactin-releasing peptide receptor binding Binding to a prolactin-releasing peptide receptor. tmpzr1t_l9r_go_relaxed.owl prolactin-releasing peptide receptor ligand molecular_function owl:Class GO:0018859 biolink:NamedThing 4-hydroxybenzoate-CoA ligase activity Catalysis of the reaction: ATP + 4-hydroxybenzoate + CoA = AMP + diphosphate + 4-hydroxybenzoyl-CoA. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoate-CoA synthetase activity|4-hydroxybenzoyl coenzyme A synthetase activity|4-hydroxybenzoyl-CoA ligase activity|4-hydroxybenzoate:CoA ligase (AMP-forming)|4-hydroxybenzoate-coenzyme A ligase (AMP-forming) EC:6.2.1.27|RHEA:23116|UM-BBD_reactionID:r0156|KEGG_REACTION:R01300|MetaCyc:4-HYDROXYBENZOATE--COA-LIGASE-RXN molecular_function owl:Class GO:0004160 biolink:NamedThing dihydroxy-acid dehydratase activity Catalysis of the reaction: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O. tmpzr1t_l9r_go_relaxed.owl alpha,beta-dihydroxyisovalerate dehydratase activity|2,3-dihydroxyisovalerate dehydratase activity|2,3-dihydroxy-acid hydro-lyase (3-methyl-2-oxobutanoate-forming)|alpha,beta-dihydroxyacid dehydratase activity|DHAD|2,3-dihydroxy-acid hydro-lyase activity|acetohydroxyacid dehydratase activity|dihydroxy acid dehydrase activity MetaCyc:DIHYDROXYISOVALDEHYDRAT-RXN|RHEA:20936|EC:4.2.1.9 molecular_function owl:Class GO:0048211 biolink:NamedThing Golgi vesicle docking The initial attachment of a Golgi transport vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the Golgi vesicle and the target membrane. tmpzr1t_l9r_go_relaxed.owl Golgi-derived vesicle docking|dictyosome vesicle docking to target membrane|Golgi vesicle docking with target membrane|Golgi vesicle to membrane docking biological_process owl:Class GO:1990070 biolink:NamedThing TRAPPI protein complex A complex that tethers COPII vesicles at ER-Golgi intermediate compartment. Its role in this part of the vesicular transport may start at the ER exit sites. Binds to a component of the COPII coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33 which are regarded as the core subunits of all TRAPP complexes in yeast. tmpzr1t_l9r_go_relaxed.owl TRAPP core complex bhm 2013-03-28T14:04:40Z cellular_component owl:Class GO:0090126 biolink:NamedThing protein-containing complex assembly involved in synapse maturation The aggregation, arrangement and bonding together of a set of components to form a protein complex that contributes to synapse maturation. tmpzr1t_l9r_go_relaxed.owl protein complex assembly involved in synapse maturation tb 2009-12-07T02:49:28Z biological_process owl:Class GO:0030423 biolink:NamedThing targeting of mRNA for destruction involved in RNA interference The process in which small interfering RNAs target cognate mRNA molecules for degradation. tmpzr1t_l9r_go_relaxed.owl RNA interference, targeting of mRNA for destruction biological_process owl:Class GO:0043979 biolink:NamedThing histone H2B-K5 acetylation The modification of histone H2B by the addition of an acetyl group to a lysine residue at position 5 of the histone. tmpzr1t_l9r_go_relaxed.owl histone H2B acetylation at K5 biological_process owl:Class GO:0032283 biolink:NamedThing plastid acetate CoA-transferase complex An acetate CoA-transferase complex located in the stroma of a plastid. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0016060 biolink:NamedThing metarhodopsin inactivation The process in which metarhodopsin is prevented from generating molecular signals. Activated rhodopsin (R*) is inactivated by a two-step process: first, R* is phosphorylated by rhodopsin kinase which lowers the activity of R*. Second, the protein arrestin binds to phosphorylated R* to de-activate it. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004703 biolink:NamedThing G protein-coupled receptor kinase activity Catalysis of the reaction: ATP + G protein-coupled receptor = ADP + G protein-coupled receptor phosphate. tmpzr1t_l9r_go_relaxed.owl GPCR phosphorylating protein kinase activity|G protein coupled receptor phosphorylating protein kinase activity|GPCRK|G-protein coupled receptor kinase activity|GPCR kinase activity|GRK5|ATP:G-protein-coupled receptor phosphotransferase activity|G-protein-coupled receptor phosphorylating protein kinase activity|STK16|GRK6|GRK4 EC:2.7.11.16|RHEA:12008 GO:0004678 molecular_function owl:Class GO:0031680 biolink:NamedThing G-protein beta/gamma-subunit complex The heterodimer formed by the beta and gamma subunits of a heterotrimeric G protein, which dissociates from the alpha subunit upon guanine nuclotide exchange. tmpzr1t_l9r_go_relaxed.owl G-beta/G-gamma complex|heterotrimeric G-protein GTPase, beta-subunit See also the cellular component term 'heterotrimeric G-protein complex ; GO:0005834'. cellular_component owl:Class GO:0031389 biolink:NamedThing Rad17 RFC-like complex A pentameric protein complex related to replication factor C, which loads a trimeric complex of checkpoint proteins (known as the checkpoint clamp or 9-1-1 complex) onto DNA at damage sites; functions in DNA damage cell cycle checkpoints. In Schizosaccharomyces pombe the subunits are known as Rad17, Rfc2, Rfc3, Rfc4, and Rfc5, while in Saccharomyces cerevisiae the subunits are known as Rad24p, Rfc2p, Rfc3p, Rfc4p, and Rfc5p. tmpzr1t_l9r_go_relaxed.owl Rad17-RLC|Rad17-RFC|RFC (Rad17)|Rad24p RFC-like complex cellular_component owl:Class GO:0042658 biolink:NamedThing MHC class II protein binding, via antigen binding groove Binding to the antigen binding groove of major histocompatibility complex class II molecules. tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex class II protein binding, via antigen binding groove molecular_function owl:Class GO:0030896 biolink:NamedThing checkpoint clamp complex Conserved heterotrimeric complex of PCNA-like proteins that is loaded onto DNA at sites of DNA damage. tmpzr1t_l9r_go_relaxed.owl Rad9-Hus1-Rad1 (9-1-1) clamp complex|CCC Note that the following subunit names have been used: human RAD9/RAD1/HUS1; S. pombe Rad9/Rad1/Hus1; S. cerevisiae Ddc1p/Rad17p/Mec3p. cellular_component owl:Class GO:0033569 biolink:NamedThing lactoferrin transmembrane transporter activity Enables the transfer of lactoferrin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0098977 biolink:NamedThing inhibitory chemical synaptic transmission Synaptic transmission that results in an inhibitory postsynaptic potential. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0060680 biolink:NamedThing lateral sprouting involved in ureteric bud morphogenesis The process in which a branch forms along the side of a ureteric bud. tmpzr1t_l9r_go_relaxed.owl dph 2009-06-02T02:44:27Z biological_process owl:Class GO:1990669 biolink:NamedThing endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with endoplasmic reticulum membrane The joining of the lipid bilayer membrane around an ERGIC-derived vesicle to the lipid bilayer membrane of the ER. Such vesicles include COPI-coated transport vesicles involved in retrograde transport. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with ER membrane|ER-Golgi intermediate compartment derived vesicle fusion with ER membrane bhm 2015-03-02T11:21:43Z biological_process owl:Class GO:0001854 biolink:NamedThing complement component C3d binding Binding to a C3d product of the complement cascade. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990252 biolink:NamedThing Syp1 complex A protein complex that contributes to the endocytic process and bud growth in yeast. It is involved in the precise timing of actin assembly during endocytosis. tmpzr1t_l9r_go_relaxed.owl Syp1 dimer bhm 2013-12-09T14:43:00Z cellular_component owl:Class GO:0097047 biolink:NamedThing DNA replication termination region A chromosomal region that contains fork pausing elements influencing the progression and merging of DNA replication forks. tmpzr1t_l9r_go_relaxed.owl TER pr 2011-05-03T03:38:40Z cellular_component owl:Class GO:0061909 biolink:NamedThing autophagosome-lysosome fusion The process in which autophagosomes, double-membraned vesicles containing cytoplasmic material, fuse with a vacuole (yeast) or lysosome (e.g. mammals and insects). In the case of yeast, inner membrane-bounded structures (autophagic bodies) appear in the vacuole. Fusion provides an acidic environment and digestive function to the interior of the autophagosome. tmpzr1t_l9r_go_relaxed.owl autophagosome-vacuole fusion|autophagosome fusion dph 2017-06-29T17:07:52Z biological_process owl:Class GO:0003005 biolink:NamedThing follicular fluid formation in ovarian follicle antrum involved in scattered antral spaces stage The menstrual cycle process in which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed as part of the scattered antral spaces stage of oogenesis. tmpzr1t_l9r_go_relaxed.owl follicular fluid formation in ovarian follicle antrum during scattered antral spaces stage biological_process owl:Class GO:0060098 biolink:NamedThing membrane reorganization involved in phagocytosis, engulfment The assembly and arrangement of the plasma membrane that is involved in the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis. tmpzr1t_l9r_go_relaxed.owl membrane reorganisation involved in phagocytosis, engulfment biological_process owl:Class GO:1903074 biolink:NamedThing TRAIL death-inducing signaling complex assembly The aggregation, arrangement and bonding together of a set of components to form a TRAIL death-inducing signaling complex. tmpzr1t_l9r_go_relaxed.owl TRAIL DISC assembly|TRAIL death-inducing signalling complex formation|TRAIL DISC formation|TRAIL death-inducing signaling complex formation|TRAIL death-inducing signalling complex assembly bf 2014-05-29T09:47:39Z biological_process owl:Class GO:0039669 biolink:NamedThing viral entry into host cell via pilus retraction and membrane fusion The uptake of a virus into a host cell which occurs via retraction of the viral-bound pilus to bring the virus in contact with the host cell membrane, followed by fusion of the bacteriophage membrane with the host outer membrane. tmpzr1t_l9r_go_relaxed.owl For annotation of viral pilus-binding proteins, see also 'viral attachment to host cell pilus ; GO:0039666'. bf 2013-09-04T14:35:44Z biological_process owl:Class GO:2000776 biolink:NamedThing histone H4 acetylation involved in response to DNA damage stimulus Any histone H4 acetylation that is involved in a response to DNA damage stimulus. tmpzr1t_l9r_go_relaxed.owl histone H4 acetylation of cellular DNA damage response|histone H4 acetylation of cellular response to DNA damage stimulus|histone H4 acetylation of response to genotoxic stress|histone H4 acetylation of DNA damage response|histone H4 acetylation of response to DNA damage stimulus mah 2011-06-22T04:00:54Z biological_process owl:Class GO:0021908 biolink:NamedThing retinoic acid receptor signaling pathway involved in spinal cord anterior/posterior pattern formation The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl retinoic acid receptor signalling pathway in spinal cord anterior-posterior patterning biological_process owl:Class GO:0052619 biolink:NamedThing coenzyme F420-1:gamma-L-glutamate ligase activity Catalysis of the reaction: GTP + L-glutamate + factor gamma-F420-1 = GDP + H+ + factor gamma-F420-2 + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:30523|EC:6.3.2.34|MetaCyc:RXN-8081 molecular_function owl:Class GO:0090017 biolink:NamedThing anterior neural plate formation The formation of anterior end of the flat, thickened layer of ectodermal cells known as the neural plate. tmpzr1t_l9r_go_relaxed.owl tb 2009-07-29T11:31:35Z biological_process owl:Class GO:1990619 biolink:NamedThing histone H3-K9 deacetylation The modification of histone H3 by the removal of an acetyl group from lysine at position 9 of the histone. tmpzr1t_l9r_go_relaxed.owl al 2015-01-23T17:27:16Z biological_process owl:Class GO:0006283 biolink:NamedThing transcription-coupled nucleotide-excision repair The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway. tmpzr1t_l9r_go_relaxed.owl TCR|transcription-coupled NER|transcription-coupled repair|TC-NER biological_process owl:Class GO:0044520 biolink:NamedThing envenomation resulting in positive regulation of vasoactive intestinal polypeptide receptor activity in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of the activity of a vasoactive intestinal polypeptide receptor in the bitten organism. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in positive regulation of VIP receptor activity in other organism jl 2012-02-26T11:55:46Z biological_process owl:Class GO:0120021 biolink:NamedThing oxysterol transfer activity Removes oxysterol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. tmpzr1t_l9r_go_relaxed.owl oxysterol carrier activity|intermembrane oxysterol transfer activity https://github.com/geneontology/go-ontology/issues/12329 krc 2017-03-17T04:50:30Z molecular_function owl:Class GO:0002095 biolink:NamedThing caveolar macromolecular signaling complex A complex composed of proteins required for beta adrenergic receptor activation of protein kinase A. It includes the Cav 12. subunit of L-type calcium channel, protein kinase A regulatory subunit 2(PKAR2), adenyl cyclase, beta-adrenergic receptor, G-alpha-S, protein phosphatase 2A (PP2A) and caveolin 3 (CAV3). tmpzr1t_l9r_go_relaxed.owl caveolar macromolecular signalling complex cellular_component owl:Class GO:0010772 biolink:NamedThing meiotic DNA recombinase assembly involved in reciprocal meiotic recombination The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044684 biolink:NamedThing dihydromethanopterin reductase activity Catalysis of the reaction: 7,8-dihydromethanopterin + NADPH = 5,6,7,8-tetrahydromethanopterin + NADP. tmpzr1t_l9r_go_relaxed.owl RHEA:42804|EC:1.5.99.15 jl 2012-08-15T13:57:55Z molecular_function owl:Class GO:0042642 biolink:NamedThing actomyosin, myosin complex part The myosin part of any complex of actin, myosin, and accessory proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048849 biolink:NamedThing neurohypophysis formation The process that gives rise to neurohypophysis. This process pertains to the initial formation of a structure from unspecified parts. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation. tmpzr1t_l9r_go_relaxed.owl neurophysis formation|posterior pituitary gland biosynthesis|posterior pituitary formation|neurophysis biosynthesis|posterior pituitary gland formation|posterior pituitary biosynthesis biological_process owl:Class GO:0030692 biolink:NamedThing Noc4p-Nop14p complex A heterodimer associated with precursors of the eukaryotic small ribosomal subunit, including the 90S preribosome; involved in small subunit biogenesis. tmpzr1t_l9r_go_relaxed.owl Nop7 subcomplex|Nop7 complex Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654' and/or 'nuclear pore ; GO:0005643'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found. cellular_component owl:Class GO:0009558 biolink:NamedThing embryo sac cellularization The process in which the eight-nucleate single celled female gametophyte develops into the seven-celled female gametophyte. This mature structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. An example of this process is found in Arabidopsis thaliana. tmpzr1t_l9r_go_relaxed.owl megagametophyte cellularization|cellularization of the embryo sac|female gametophyte cellularization GO:0009797 biological_process owl:Class GO:0061379 biolink:NamedThing inferior colliculus development The process whose specific outcome is the progression of the inferior colliculus over time, from its formation to the mature structure. The inferior colliculus (IC) (Latin, lower hill) is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subdivisions: the central nucleus (CIC), a dorsal cortex (DCIC) by which it is surrounded, and an external cortex (ICX) which is located laterally. tmpzr1t_l9r_go_relaxed.owl dph 2010-11-09T09:49:24Z biological_process owl:Class GO:0031973 biolink:NamedThing chromoplast intermembrane space The region between the inner and outer lipid bilayers of a chromoplast envelope. tmpzr1t_l9r_go_relaxed.owl chromoplast envelope lumen cellular_component owl:Class GO:0098548 biolink:NamedThing cytoplasmic side of Golgi membrane The side (leaflet) of the Golgi membrane that faces the cytoplasm. tmpzr1t_l9r_go_relaxed.owl dos 2013-12-03T10:49:33Z cellular_component owl:Class GO:0051010 biolink:NamedThing microtubule plus-end binding Binding to the plus end of a microtubule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019060 biolink:NamedThing intracellular transport of viral protein in host cell The directed movement of a viral protein within the host cell. tmpzr1t_l9r_go_relaxed.owl viral capsid transport in host cell cytoplasm|intracellular transport of viral proteins in host cell|intracellular transport of viral capsid in host cell|viral capsid transport in host cell nucleus|intracellular transport of viral capsid protein in host cell|cytoplasmic viral capsid transport|intracellular viral protein transport|intracellular viral capsid transport|nuclear viral capsid transport This term is for annotation of proteins responsible for the movement of individual viral proteins, rather than the whole viral particle. GO:0046801|GO:0046743|GO:0046742 biological_process owl:Class GO:0003036 biolink:NamedThing detection of pH by aortic body chemoreceptor signaling The process in which information about the levels of hydrogen ions are received and are converted to a molecular signal by chemoreceptors in an aortic body. tmpzr1t_l9r_go_relaxed.owl detection of pH by aortic body chemoreceptor signalling biological_process owl:Class GO:0120104 biolink:NamedThing mitotic actomyosin contractile ring, proximal layer The region of the mitotic actomyosin ring adjacent to the plasma membrane where membrane bound scaffolds are located. tmpzr1t_l9r_go_relaxed.owl actomyosin contractile ring, proximal layer krc 2017-10-11T22:49:58Z cellular_component owl:Class GO:0021779 biolink:NamedThing oligodendrocyte cell fate commitment The process in which the developmental fate of a cell becomes restricted such that it will develop into an oligodendrocyte. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090388 biolink:NamedThing phagosome-lysosome docking involved in apoptotic cell clearance The initial attachment of a phagosome membrane to a lysosome membrane that occurs as a part of apoptotic cell clearance. Docking requires only that the proteins come close enough to interact and adhere. tmpzr1t_l9r_go_relaxed.owl tb 2010-10-27T10:57:39Z biological_process owl:Class GO:0071521 biolink:NamedThing Cdc42 GTPase complex A protein complex formed by the association of the small GTPase Cdc42 with additional proteins. In Schizosaccharomyces the complex contains the Cdc42, Ras1, Scd1, Scd2, andShk1 proteins, and functions in the Ras1-Scd GTPase signalling pathway. tmpzr1t_l9r_go_relaxed.owl Ras1-Scd1-Scd2-Cdc42-Shk1 complex mah 2010-01-07T01:29:12Z cellular_component owl:Class GO:0015416 biolink:NamedThing ABC-type phosphonate transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + phosphonate(out) = ADP + phosphate + phosphonate(in). A phosphonate is any salt, anion, or ester of phosphonic acid (HPO(OH)2). tmpzr1t_l9r_go_relaxed.owl organic phosphonate transmembrane-transporting ATPase activity|alkylphosphonate transmembrane-transporting ATPase activity|alkylphosphonate ABC transporter activity|phosphonate-transporting ATPase activity|ATPase-coupled alkylphosphonate transmembrane transporter activity|organic phosphonate transmembrane transporter activity|alkylphosphonate transmembrane transporter activity|ATP phosphohydrolase (phosphonate-transporting)|phosphonate ABC transporter|phosphonate transporting ATPase activity|ATPase-coupled organic phosphonate transmembrane transporter activity MetaCyc:ABC-23-RXN|EC:7.3.2.2|MetaCyc:3.6.3.28-RXN|RHEA:18065 GO:0042917|GO:0102017|GO:0015604 molecular_function owl:Class GO:0000765 biolink:NamedThing response to pheromone regulating pheromone-induced unidirectional conjugation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus that regulates the process of pheromone-induced unidirectional conjugation. tmpzr1t_l9r_go_relaxed.owl response to pheromone during pheromone-induced unidirectional biological_process owl:Class GO:1990461 biolink:NamedThing detoxification of iron ion Any process that reduces or removes the toxicity of iron ion. These include transport of iron away from sensitive areas and to compartments or complexes whose purpose is sequestration of iron ion. tmpzr1t_l9r_go_relaxed.owl sart 2014-08-19T10:12:46Z biological_process owl:Class GO:0060641 biolink:NamedThing mammary gland duct regression in males The process in which the epithelium of the mammary duct is destroyed in males. tmpzr1t_l9r_go_relaxed.owl dph 2009-05-20T04:50:57Z biological_process owl:Class GO:0003689 biolink:NamedThing DNA clamp loader activity Facilitating the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl PCNA loading complex activity|DNA-protein loading ATPase activity|DNA clamp loading ATPase activity|PCNA loading activity|protein-DNA loading ATPase activity Reactome:R-HSA-176264|Reactome:R-HSA-174439 GO:0033170 molecular_function owl:Class GO:0097709 biolink:NamedThing connective tissue replacement The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared. tmpzr1t_l9r_go_relaxed.owl pr 2016-05-17T10:49:10Z biological_process owl:Class GO:0103067 biolink:NamedThing 4alpha-carboxy-5alpha-cholesta-8-en-3beta-ol:NAD(P)+ 3-dehydrogenase (decarboxylating) activity Catalysis of the reaction: 4alpha-carboxy-5alpha-cholesta-8-en-3beta-ol + NAD(P) = 5alpha-cholesta-8-en-3-one + carbon dioxide + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN66-23|RHEA:33447|EC:1.1.1.170 molecular_function owl:Class GO:0034788 biolink:NamedThing 2,3-dihydroxy-2'-carboxybiphenyl 1,2-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxy-2'-carboxybiphenyl + O2 = 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1041 molecular_function owl:Class GO:0071821 biolink:NamedThing FANCM-MHF complex A protein complex contains the proteins FANCM and MHF, or their orthologs, plays an essential role in DNA remodeling, protects replication forks, and is conserved in eukaryotes. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-07T12:08:38Z cellular_component owl:Class GO:0103010 biolink:NamedThing gibberellin A53,2-oxoglutarate:oxygen oxidoreductase activity (GA97-forming) Catalysis of the reaction: gibberellin A53 + 2-oxoglutarate + O2 = gibberellin A97 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-991 molecular_function owl:Class GO:0016498 biolink:NamedThing neuromedin K receptor activity Combining with neuromedin K, the peptide Asp-Met-His-Asp-Phe-Phe-Val-Gly-Leu-Met to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl neurokinin B receptor activity molecular_function owl:Class GO:0031042 biolink:NamedThing O-glycan processing, core 6 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 6 O-glycan structure, GlcNAc-beta-(1->6)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052734 biolink:NamedThing shikimate 3-dehydrogenase (NAD+) activity Catalysis of the reaction: shikimate + NAD+ = 3-dehydroshikimate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl shikimate:NAD(P)(+) oxidoreductase activity|DHS reductase activity|3-dehydroshikimic reductase activity|shikimate:NAD(P)(+) 3-oxidoreductase activity|dehydroshikimic reductase activity|3-dehydroshikimate reductase activity|shikimate oxidoreductase activity RHEA:17741|KEGG_REACTION:R06847|EC:1.1.1.282 ai 2011-08-16T04:28:23Z molecular_function owl:Class GO:0007628 biolink:NamedThing adult walking behavior The behavior of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg. tmpzr1t_l9r_go_relaxed.owl adult walking behaviour biological_process owl:Class GO:0048106 biolink:NamedThing establishment of thoracic bristle planar orientation Orientation along the body surface of bristles, sensory organs originating from a sensory organ precursor cell, such that they all point in a uniform direction. tmpzr1t_l9r_go_relaxed.owl establishment of body bristle planar orientation biological_process owl:Class GO:0001588 biolink:NamedThing dopamine neurotransmitter receptor activity, coupled via Gs Combining with the neurotransmitter dopamine and activating adenylate cyclase via coupling to Gs to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl dopamine D1 receptor activity|dopamine D5 receptor activity GO:0001590|GO:0001589 molecular_function owl:Class GO:0102557 biolink:NamedThing protopanaxadiol 6-hydroxylase activity Catalysis of the reaction: (20S)-protopanaxadiol + O2 + NADPH(4-) + H+ <=> protopanaxatriol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:22272|MetaCyc:RXN-14978|EC:1.14.14.121 molecular_function owl:Class GO:0010244 biolink:NamedThing response to low fluence blue light stimulus by blue low-fluence system Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes. tmpzr1t_l9r_go_relaxed.owl response to low fluence blue light|response to low fluence blue light by blf system biological_process owl:Class GO:0031772 biolink:NamedThing type 2 hypocretin receptor binding Binding to a type 2 hypocretin receptor. tmpzr1t_l9r_go_relaxed.owl type 2 hypocretin receptor ligand|type 2 orexin receptor binding molecular_function owl:Class GO:0016038 biolink:NamedThing absorption of visible light The reception of a (visible light) photon by a cell, visible light being defined as having a wavelength within the range 380-780 nm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047084 biolink:NamedThing methyltetrahydroprotoberberine 14-monooxygenase activity Catalysis of the reaction: O2 + NADPH + H+ + (S)-N-methylcanadine = H2O + NADP+ + allocryptopine. tmpzr1t_l9r_go_relaxed.owl (S)-N-methylcanadine,NADPH:oxygen oxidoreductase (14-hydroxylating)|methyltetrahydroprotoberberine 14-hydroxylase activity|(S)-cis-N-methyltetrahydroprotoberberine-14-hydroxylase activity|(S)-cis-N-methyltetrahydroberberine 14-monooxygenase activity EC:1.14.14.97|MetaCyc:1.14.13.37-RXN|RHEA:23684 molecular_function owl:Class GO:0050582 biolink:NamedThing xylitol oxidase activity Catalysis of the reaction: xylitol + O2 = xylose + H2O2. tmpzr1t_l9r_go_relaxed.owl xylitol:oxygen oxidoreductase activity MetaCyc:1.1.3.41-RXN|EC:1.1.3.41 molecular_function owl:Class GO:0001886 biolink:NamedThing endothelial cell morphogenesis The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050642 biolink:NamedThing 2-alpha-hydroxytaxane 2-O-benzoyltransferase activity Catalysis of the reaction: 10-deacetyl-2-debenzoylbaccatin III + benzoyl-CoA = 10-deacetylbaccatin III + CoA. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA:taxane 2-alpha-O-benzoyltransferase activity|2alpha-hydroxytaxane 2-O-benzoyltransferase activity|2a-hydroxytaxane 2-O-benzoyltransferase activity|benzoyl-CoA:taxan-2alpha-ol O-benzoyltransferase activity|2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl transferase activity|benzoyl-CoA:taxane 2alpha-O-benzoyltransferase activity RHEA:18741|EC:2.3.1.166|MetaCyc:2.3.1.166-RXN|KEGG_REACTION:R06310 molecular_function owl:Class GO:0106242 biolink:NamedThing kolavenyl diphosphate synthase activity Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = (+)-kolavenyl diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:5.5.1.29|RHEA:54676 hjd 2019-12-19T18:31:00Z molecular_function owl:Class GO:1990562 biolink:NamedThing syndecan-syntenin-ALIX complex An exosome complex that is assembled in the multivesicular body (MVB) membrane and chaperoned to the exosome by the ESCRT-III machinery. tmpzr1t_l9r_go_relaxed.owl exosome complex An example of this is SCD1 in human (UniProt symbol P18827) in PMID:22660413 (inferred from physical interaction). bhm 2014-11-25T16:30:47Z cellular_component owl:Class GO:0030847 biolink:NamedThing termination of RNA polymerase II transcription, exosome-dependent The process in which transcription of nonpolyadenylated RNA polymerase II transcripts is terminated; coupled to the maturation of the RNA 3'-end. tmpzr1t_l9r_go_relaxed.owl transcription termination from Pol II promoter, poly(A)-independent|termination of RNA polymerase II transcription, poly(A)-independent|transcription termination from Pol II promoter, RNA polymerase(A)-independent biological_process owl:Class GO:0035868 biolink:NamedThing alphav-beta3 integrin-HMGB1 complex A protein complex that consists of an alphav-beta3 integrin complex bound to high mobility group box 1 protein. tmpzr1t_l9r_go_relaxed.owl alphav-beta3 integrin-high mobility group box 1 complex bf 2011-05-25T03:07:24Z cellular_component owl:Class GO:0046465 biolink:NamedThing dolichyl diphosphate metabolic process The chemical reactions and pathways involving dolichyl diphosphate, a diphosphorylated dolichol derivative. In eukaryotes, these function as carriers of mono- and oligosaccharide residues in the glycosylation of lipids and proteins within intracellular membranes. tmpzr1t_l9r_go_relaxed.owl dolichyl diphosphate metabolism biological_process owl:Class GO:0004777 biolink:NamedThing succinate-semialdehyde dehydrogenase (NAD+) activity Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl succinyl semialdehyde dehydrogenase activity|succinate semialdehyde:NAD+ oxidoreductase activity|succinate-semialdehyde:NAD+ oxidoreductase activity|succinic semialdehyde dehydrogenase activity|succinate-semialdehyde dehydrogenase activity|succinate semialdehyde dehydrogenase activity Reactome:R-HSA-888548|EC:1.2.1.24|MetaCyc:SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|RHEA:13217 GO:0008952 molecular_function owl:Class GO:0008482 biolink:NamedThing sulfite oxidase activity Catalysis of the reaction: H(2)O + O(2) + sulfite = H(2)O(2) + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl sulfite:oxygen oxidoreductase activity|sulphite oxidase activity KEGG_REACTION:R00533|MetaCyc:SULFITE-OXIDASE-RXN|MetaCyc:PWY-5326|EC:1.8.3.1|RHEA:24600|Reactome:R-HSA-1614544 molecular_function owl:Class GO:0047003 biolink:NamedThing dTDP-6-deoxy-L-talose 4-dehydrogenase activity Catalysis of the reaction: dTDP-6-deoxy-L-talose + NADP(+) = dTDP-4-dehydro-6-deoxy-L-mannose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl TDP-6-deoxy-L-talose dehydrogenase activity|thymidine diphospho-6-deoxy-L-talose dehydrogenase activity|dTDP-6-deoxy-L-talose:NADP+ 4-oxidoreductase activity|dTDP-6-deoxy-L-talose dehydrogenase (4-reductase) RHEA:23648|KEGG_REACTION:R02776|EC:1.1.1.134|MetaCyc:1.1.1.134-RXN molecular_function owl:Class GO:0035593 biolink:NamedThing positive regulation of Wnt signaling pathway by establishment of Wnt protein localization to extracellular region Any process that activates or increases the frequency, rate or extent of the Wnt signaling pathway by the directed movement of a Wnt protein within the extracellular region. tmpzr1t_l9r_go_relaxed.owl positive regulation of Wnt-activated signaling pathway by establishment of Wnt protein localization to extracellular region|positive regulation of Wnt diffusion|positive regulation of Wnt receptor signalling pathway by establishment of Wnt protein localization in extracellular region|positive regulation of Wnt receptor signaling pathway by establishment of Wnt protein localisation in extracellular region|positive regulation of Wnt receptor signaling pathway by establishment of Wnt protein localization to extracellular region|positive regulation of Wnt receptor signaling pathway by establishment of Wnt protein localization in extracellular region|positive regulation of Wnt signaling range bf 2010-11-09T10:29:44Z biological_process owl:Class GO:0021962 biolink:NamedThing vestibulospinal tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990340 biolink:NamedThing laminin-15 complex A laminin complex composed of alpha5, beta2 and gamma3 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-523 bhm 2014-03-20T23:48:25Z cellular_component owl:Class GO:0060488 biolink:NamedThing orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis The process in which a lung bud bifurcates perpendicular to the plane of the previous bud. tmpzr1t_l9r_go_relaxed.owl perpendicular dichotomous subdivision of terminal units involved in lung branching morphogenesis biological_process owl:Class GO:0036348 biolink:NamedThing hydantoin racemase activity Catalysis of the reaction: D-5-monosubstituted hydantoin = L-5-monosubstituted hydantoin. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9781|EC:5.1.99.5|KEGG_REACTION:R09704|RHEA:46624 bf 2012-09-19T10:47:56Z molecular_function owl:Class GO:0102210 biolink:NamedThing rhamnogalacturonan endolyase activity Catalysis of the reaction: H2O + a rhamnogalacturonan type I <=> [rhamnogalacturonan I oligosaccharide]-alpha-L-rhamnose + 4-deoxy-4,5-unsaturated D-galactopyranosyluronate-[rhamnogalacturonan I oligosaccharide]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12173|EC:4.2.2.23 molecular_function owl:Class GO:0071501 biolink:NamedThing cellular response to sterol depletion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. tmpzr1t_l9r_go_relaxed.owl cellular sterol depletion response mah 2009-12-18T02:54:14Z biological_process owl:Class GO:0031768 biolink:NamedThing ghrelin receptor binding Binding to a ghrelin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 growth hormone secretagogue GH-releasing peptide receptor binding|ghrelin receptor ligand molecular_function owl:Class GO:0051566 biolink:NamedThing anthocyanidin-3-glucoside rhamnosyltransferase activity Catalysis of the reaction: anthocyanidin 3-glucoside + UDP-rhamnose = anthocyanidin 3-rutinoside + UDP. tmpzr1t_l9r_go_relaxed.owl 3RT activity|anthocyanidin 3-glucoside-rhamnosyltransferase activity molecular_function owl:Class GO:0050315 biolink:NamedThing synephrine dehydratase activity Catalysis of the reaction: synephrine = (4-hydroxyphenyl)acetaldehyde + methylammonium. tmpzr1t_l9r_go_relaxed.owl 1-(4-hydroxyphenyl)-2-(methylamino)ethanol hydro-lyase (methylamine-forming) RHEA:32203|EC:4.2.1.88|KEGG_REACTION:R03359|MetaCyc:SYNEPHRINE-DEHYDRATASE-RXN molecular_function owl:Class GO:0036192 biolink:NamedThing 3-hydroxyindolin-2-one monooxygenase activity Catalysis of the reaction: 3-hydroxyindolin-2-one + NAD(P)H + H+ + O2 = 2-hydroxy-2H-1,4-benzoxazin-3(4H)-one + NAD(P)+ + H2O. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyindolin-2-one,NAD(P)H:oxygen oxidoreductase (2-hydroxy-2H-1,4-benzoxazin-3(4H)-one-forming) EC:1.14.14.109|RHEA:31927|KEGG_REACTION:R07422 bf 2012-04-19T11:45:33Z molecular_function owl:Class GO:0120171 biolink:NamedThing Cdc24p-Far1p-Gbetagamma complex A complex that forms at the cell cortex in response to pheromone treatment and is required for the polarized growth of haploid yeast cells towards a mating partner during yeast mating. In the yeast Saccharomyces cerevisiae, this complex consists of Cdc24p, Far1p, Ste4p (G-protein beta subunit) and Ste18p (G-protein gamma subunit). tmpzr1t_l9r_go_relaxed.owl Cdc24p-Far1p-BG complex|CDC24-FAR1-Gbetagamma complex|CDC24-FAR1-BG complex krc 2018-05-31T17:11:20Z cellular_component owl:Class GO:0033983 biolink:NamedThing diaminobutyrate decarboxylase activity Catalysis of the reaction: L-2,4-diaminobutyrate + H(+) = 1,3-diaminopropane + CO(2). tmpzr1t_l9r_go_relaxed.owl DABA DC|L-2,4-diaminobutyrate decarboxylase activity|L-2,4-diaminobutanoate carboxy-lyase (propane-1,3-diamine-forming) activity|L-2,4-diaminobutanoate carboxy-lyase activity KEGG_REACTION:R07650|EC:4.1.1.86|RHEA:15689|MetaCyc:4.1.1.86-RXN molecular_function owl:Class GO:0051060 biolink:NamedThing pullulanase activity Catalysis of the hydrolysis of (1,6)-alpha-D-glucosidic linkages in pullulan (a linear polymer of alpha-(1,6)-linked maltotriose units) and in amylopectin and glycogen, and the a- and b-limit dextrins of amylopectin and glycogen. tmpzr1t_l9r_go_relaxed.owl debranching enzyme activity|R-enzyme|pullulan 6-glucanohydrolase activity|pullulan alpha-1,6-glucanohydrolase activity|limit dextrinase|alpha-dextrin endo-1,6-alpha-glucosidase activity|bacterial debranching enzyme|amylopectin 6-glucanohydrolase activity EC:3.2.1.41|MetaCyc:RXN-1824 molecular_function owl:Class GO:0090711 biolink:NamedThing FMN hydrolase activity Catalysis of the reaction: FMN + H2O = riboflavin + phosphate. tmpzr1t_l9r_go_relaxed.owl tb 2016-10-21T16:27:34Z molecular_function owl:Class GO:0047330 biolink:NamedThing polyphosphate-glucose phosphotransferase activity Catalysis of the reaction: beta-D-glucose + long chain polyphosphate = glucose-6-phosphate + long chain polyphosphate. tmpzr1t_l9r_go_relaxed.owl polyphosphate glucokinase activity|polyphosphate:D-glucose 6-phosphotransferase activity|polyphosphate-glucose 6-phosphotransferase activity|polyphosphate-D-(+)-glucose-6-phosphotransferase activity MetaCyc:2.7.1.63-RXN|RHEA:22036|EC:2.7.1.63 molecular_function owl:Class GO:0004149 biolink:NamedThing dihydrolipoyllysine-residue succinyltransferase activity Catalysis of the reaction: succinyl-CoA + dihydrolipoamide = CoA + S-succinyldihydrolipoamide. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide succinyltransferase activity|lipoate succinyltransferase (Escherichia coli) activity|lipoate succinyltransferase activity|dihydrolipoic transsuccinylase activity|succinyl-CoA:enzyme-6-N-(dihydrolipoyl)lysine S-succinyltransferase activity|dihydrolipoamide S-succinyltransferase activity|succinyl-CoA:enzyme-N6-(dihydrolipoyl)lysine S-succinyltransferase activity|lipoic transsuccinylase activity|dihydrolipolyl transsuccinylase activity|enzyme-dihydrolipoyllysine:succinyl-CoA S-succinyltransferase activity|lipoyl transsuccinylase activity|dihydrolipoyl transsuccinylase activity|succinyl-CoA:dihydrolipoamide S-succinyltransferase activity|succinyl-CoA:dihydrolipoate S-succinyltransferase activity RHEA:15213|EC:2.3.1.61 molecular_function owl:Class GO:1990143 biolink:NamedThing CoA-synthesizing protein complex A multisubunit complex likely involved in the synthesis of coenzyme A (CoA). In S. cerevisiae, the complex consists of at least Cab2, Cab3, Cab4 and Cab5 but may also include Sis2 and Vhs3. The latter subunits are shared by the GO:0071513 phosphopantothenoylcysteine decarboxylase complex that catalyses the third step of the coenzyme A (CoA) biosynthetic pathway. tmpzr1t_l9r_go_relaxed.owl coenzyme A-synthesizing protein complex|CoA-SPC rb 2013-07-18T22:30:20Z cellular_component owl:Class GO:0016762 biolink:NamedThing xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. tmpzr1t_l9r_go_relaxed.owl endoxyloglucan transferase activity|xyloglucan endotransglucosylase activity|xyloglucan:xyloglucan xyloglucanotransferase activity|endo-xyloglucan transferase activity EC:2.4.1.207|MetaCyc:2.4.1.207-RXN GO:0080039 molecular_function owl:Class GO:0140692 biolink:NamedThing very long-chain fatty acid omega-hydroxylase activity Catalysis of the reaction: an omega-methyl-very-long-chain fatty acid + O2 + reduced [NADPH-hemoprotein reductase] = an omega-hydroxy-very-long-chain fatty acid + H+ + H2O + oxidized [NADPH-hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21925 pg 2021-08-05T07:41:17Z molecular_function owl:Class GO:0043257 biolink:NamedThing laminin-8 complex A laminin complex composed of alpha4, beta1 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-411 complex cellular_component owl:Class GO:0030596 biolink:NamedThing alpha-L-rhamnosidase activity Catalysis of the hydrolysis of terminal non-reducing alpha-L-rhamnose residues in alpha-L-rhamnosides. tmpzr1t_l9r_go_relaxed.owl alpha-L-rhamnoside rhamnohydrolase activity|alpha-L-rhamnosidase T|alpha-L-rhamnosidase N MetaCyc:3.2.1.40-RXN|EC:3.2.1.40 molecular_function owl:Class GO:0050620 biolink:NamedThing phycocyanobilin:ferredoxin oxidoreductase activity Catalysis of the reaction: (3Z)-phycocyanobilin + oxidized ferredoxin = biliverdin IXa + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl (3Z)-phycocyanobilin:ferredoxin oxidoreductase activity EC:1.3.7.5|MetaCyc:1.3.7.5-RXN|RHEA:15309 molecular_function owl:Class GO:0070773 biolink:NamedThing protein-N-terminal glutamine amidohydrolase activity Catalysis of the reaction: protein-N-terminal-L-glutamine + H2O = protein-N-terminal-L-glutamate + NH3. This reaction is the deamidation of an N-terminal glutamine residue of a protein. tmpzr1t_l9r_go_relaxed.owl NtQ-amidase activity mah 2009-06-30T11:34:08Z molecular_function owl:Class GO:0070554 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-3-complexin complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 3, and a complexin (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl SNARE complex (Stx3, Snap25, Vamp2, Cplx1)|Stx3-Snap25-Vamp2-Cplx1 complex cellular_component owl:Class GO:0070411 biolink:NamedThing I-SMAD binding Binding to an inhibitory SMAD signaling protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018814 biolink:NamedThing phenylacetaldoxime dehydratase activity Catalysis of the reaction: (trans)-phenylacetaldoxime = H(2)O + phenylacetonitrile. tmpzr1t_l9r_go_relaxed.owl OxdB|(Z)-phenylacetaldehyde-oxime hydro-lyase activity|arylacetaldoxime dehydratase activity|PAOx dehydratase activity|(Z)-phenylacetaldehyde-oxime hydro-lyase (phenylacetonitrile-forming) activity MetaCyc:4.99.1.7-RXN|RHEA:20069|KEGG_REACTION:R07638|EC:4.99.1.7|UM-BBD_reactionID:r0697 molecular_function owl:Class GO:0102855 biolink:NamedThing 1-18:1-2-18:2-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-18:1-2-18:2-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:2-2-18:2-sn-glycerol-3-phosphocholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:46332|EC:1.14.19.22|MetaCyc:RXN-8322 molecular_function owl:Class GO:0047434 biolink:NamedThing indolepyruvate decarboxylase activity Catalysis of the reaction: indolepyruvate = CO2 + indole acetaldehyde. tmpzr1t_l9r_go_relaxed.owl 3-(indol-3-yl)pyruvate carboxy-lyase [(2-indol-3-yl)acetaldehyde-forming]|indole-3-pyruvate decarboxylase activity|3-(indol-3-yl)pyruvate carboxy-lyase activity|indol-3-yl-pyruvate carboxy-lyase activity RHEA:18017|MetaCyc:4.1.1.74-RXN|EC:4.1.1.74 molecular_function owl:Class GO:0042152 biolink:NamedThing RNA-mediated DNA recombination The reverse transcription of an RNA molecule followed by recombination between the resultant cDNA and its homologous chromosomal allele. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:2001078 biolink:NamedThing (1->6)-beta-D-glucan binding Binding to (1->6)-beta-D-glucan. tmpzr1t_l9r_go_relaxed.owl beta-1,6-D-glucan binding|beta-1->6-D-glucan binding|(1,6)-beta-D-glucan binding|1,6-beta-D-glucan binding|1->6-beta-D-glucan binding|beta-(1->6)-D-glucan binding|beta-(1,6)-D-glucan binding jl 2011-09-15T01:12:50Z molecular_function owl:Class GO:1903608 biolink:NamedThing protein localization to cytoplasmic stress granule A process in which a protein is transported to, or maintained in, a location within a cytoplasmic stress granule. tmpzr1t_l9r_go_relaxed.owl protein localization in cytoplasmic stress granule|protein localisation in cytoplasmic stress granule|protein localisation to cytoplasmic stress granule|protein localization to stress granule mah 2014-11-14T16:20:32Z biological_process owl:Class GO:0061952 biolink:NamedThing midbody abscission The process by which the midbody, the cytoplasmic bridge that connects the two prospective daughter cells, is severed at the end of mitotic cytokinesis, resulting in two separate daughter cells. tmpzr1t_l9r_go_relaxed.owl cell separation during cytokinesis|cytokinetic abscission dph 2017-11-07T19:44:37Z biological_process owl:Class GO:0102399 biolink:NamedThing dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose <=> S-adenosyl-L-homocysteine + dTDP-3-N,N-dimethylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13658 molecular_function owl:Class GO:0008929 biolink:NamedThing methylglyoxal synthase activity Catalysis of the reaction: glycerone phosphate = methylglyoxal + phosphate. tmpzr1t_l9r_go_relaxed.owl glycerone-phosphate phospho-lyase (methylglyoxal-forming)|glycerone-phosphate phospho-lyase activity|methylglyoxal synthetase activity MetaCyc:METHGLYSYN-RXN|EC:4.2.3.3|KEGG_REACTION:R01016|RHEA:17937 molecular_function owl:Class GO:0030962 biolink:NamedThing peptidyl-arginine dihydroxylation to peptidyl-3,4-dihydroxy-L-arginine The dihydroxylation of peptidyl-arginine to form peptidyl-3,4-dihydroxy-L-arginine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0369 biological_process owl:Class GO:0097046 biolink:NamedThing replication fork progression beyond termination site Regulation of DNA replication by a mechanism that allows a DNA replication fork to progress beyond a termination site, which is a region containing fork pausing elements that influence the progression and merging of DNA replication forks. tmpzr1t_l9r_go_relaxed.owl pr 2011-05-03T03:34:01Z biological_process owl:Class GO:0004826 biolink:NamedThing phenylalanine-tRNA ligase activity Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). tmpzr1t_l9r_go_relaxed.owl phenylalanine translase activity|phenylalanyl-tRNA synthetase activity|phenylalanyl-transfer RNA ligase activity|phenylalanine-tRNA synthetase activity|phenylalanyl-transfer RNA synthetase activity|phenylalanyl-tRNA ligase activity|L-phenylalanine:tRNAPhe ligase (AMP-forming) activity|phenylalanyl-transfer ribonucleate synthetase activity|L-phenylalanyl-tRNA synthetase activity EC:6.1.1.20|RHEA:19413|Reactome:R-HSA-380203|MetaCyc:PHENYLALANINE--TRNA-LIGASE-RXN|Reactome:R-HSA-379848 molecular_function owl:Class GO:0070221 biolink:NamedThing sulfide oxidation, using sulfide:quinone oxidoreductase A sulfide oxidation process that proceeds via the reaction catalyzed by sulfide:quinone oxidoreductase. tmpzr1t_l9r_go_relaxed.owl sulfide oxidation, using sulfide-quinone reductase|sulphide oxidation, using sulfide:quinone oxidoreductase MetaCyc:P222-PWY biological_process owl:Class GO:0009819 biolink:NamedThing drought recovery Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of prolonged deprivation of water that restores that organism to a normal (non-stressed) condition. tmpzr1t_l9r_go_relaxed.owl drought tolerance biological_process owl:Class GO:0031043 biolink:NamedThing O-glycan processing, core 7 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 7 O-glycan structure, GalNAc-alpha-(1->6)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0090528 biolink:NamedThing smooth septate junction assembly The assembly of a smooth septate junction, a septate junction that lacks the regular arrays of electron-dense septae found in pleated septate junctions. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-05T14:47:40Z biological_process owl:Class GO:0004815 biolink:NamedThing aspartate-tRNA ligase activity Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). tmpzr1t_l9r_go_relaxed.owl aspartyl ribonucleic synthetase activity|aspartyl-transfer RNA synthetase activity|aspartyl-tRNA synthetase activity|aspartyl-transfer ribonucleic acid synthetase activity|aspartic acid translase activity|aspartyl ribonucleate synthetase activity|L-aspartate:tRNAAsp ligase (AMP-forming) Reactome:R-HSA-380229|EC:6.1.1.12|MetaCyc:ASPARTATE--TRNA-LIGASE-RXN|RHEA:19649|Reactome:R-HSA-379867 molecular_function owl:Class GO:0047948 biolink:NamedThing glutarate-CoA ligase activity Catalysis of the reaction: ATP + CoA + glutarate = ADP + glutaryl-CoA + H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl glutarate:CoA ligase (ADP-forming)|glutaryl coenzyme A synthetase activity|glutaryl-CoA synthetase activity MetaCyc:GLUTARATE--COA-LIGASE-RXN|KEGG_REACTION:R02402|EC:6.2.1.6|RHEA:14169 molecular_function owl:Class GO:0022876 biolink:NamedThing protein-N(PI)-phosphohistidine-galactosamine phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + galactosamine(out) = protein histidine + galactosamine phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. tmpzr1t_l9r_go_relaxed.owl galactosamine PTS transporter activity molecular_function owl:Class GO:0047941 biolink:NamedThing glucuronolactone reductase activity Catalysis of the reaction: L-gulono-1,4-lactone + NADP(+) = D-glucurono-3,6-lactone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:GLUCURONOLACTONE-REDUCTASE-RXN|KEGG_REACTION:R03183|EC:1.1.1.20|RHEA:18925 molecular_function owl:Class GO:0102935 biolink:NamedThing gypsogenin-UDP-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + gypsogenin = gypsogenin-28-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9012 molecular_function owl:Class GO:1990155 biolink:NamedThing Dsc E3 ubiquitin ligase complex assembly The aggregation, arrangement and bonding together of a set of components to form a Dsc E3 ubiquitin ligase complex, an E3 ubiquitin ligase complex localized to the ER and Golgi membrane. tmpzr1t_l9r_go_relaxed.owl Dsc complex assembly mah 2013-08-01T14:19:19Z biological_process owl:Class GO:0016084 biolink:NamedThing myostimulatory hormone activity The action characteristic of myostimulatory hormone, a peptide hormone that stimulates muscle contraction. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050527 biolink:NamedThing poly(3-hydroxyoctanoate) depolymerase activity Catalysis of the reaction: H2O + poly[(R)-3-hydroxyoctanoate](n) = poly[(R)-3-hydroxyoctanoate](x) + poly[(R)-3-hydroxyoctanoate](n-x); x is 1-5. tmpzr1t_l9r_go_relaxed.owl poly[(R)-3-hydroxyoctanoate] hydrolase activity|poly{oxycarbonyl[(R)-2-pentylethylene]} hydrolase activity|poly(HAMCL) depolymerase activity|PHA depolymerase activity|poly((R)-3-hydroxyoctanoate) hydrolase activity|poly(HA) depolymerase activity|poly[(R)-hydroxyalkanoic acid] depolymerase|poly(HA(MCL)) depolymerase activity|PHO depolymerase activity|poly(3HO) depolymerase activity|poly((R)-hydroxyalkanoic acid) depolymerase activity MetaCyc:3.1.1.76-RXN|EC:3.1.1.76 molecular_function owl:Class GO:0106325 biolink:NamedThing acetylgalactosaminyl-O-glycosyl-seryl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:56188|EC:2.4.1.148 hjd 2020-09-30T13:37:55Z molecular_function owl:Class GO:0070449 biolink:NamedThing elongin complex A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (about 100 kDa) and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa) subunits. tmpzr1t_l9r_go_relaxed.owl transcription factor B (SIII) complex|transcription elongation factor SIII complex|elongin (SIII) complex See also the cellular component terms 'cyclin-dependent protein kinase activating kinase holoenzyme complex ; GO:0019907' and 'DNA-directed RNA polymerase II, holoenzyme ; GO:0016591'. cellular_component owl:Class GO:0047008 biolink:NamedThing pregnan-21-ol dehydrogenase (NADP+) activity Catalysis of the reaction: NADP(+) + pregnan-21-ol = H(+) + NADPH + pregnan-21-al. tmpzr1t_l9r_go_relaxed.owl 21-hydroxy steroid (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|21-hydroxy steroid dehydrogenase activity|21-hydroxysteroid dehydrogenase (NADP+) activity|NADP-21-hydroxysteroid dehydrogenase activity|21-hydroxysteroid:NADP+ 21-oxidoreductase activity|21-hydroxy steroid dehydrogenase (nicotinamide adenine dinucleotide phosphate) activity KEGG_REACTION:R03044|EC:1.1.1.151|MetaCyc:1.1.1.151-RXN|RHEA:23712 molecular_function owl:Class GO:0050930 biolink:NamedThing induction of positive chemotaxis Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103026 biolink:NamedThing fructose-1-phosphatase activity Catalysis of the reaction: beta-D-fructofuranose 1-phosphate + H2O <=> beta-D-fructofuranose + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:35603|MetaCyc:RXN0-5186 molecular_function owl:Class GO:0003852 biolink:NamedThing 2-isopropylmalate synthase activity Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl alpha-isopropylmalate synthetase activity|isopropylmalate synthase activity|alpha-isopropylmalate synthase activity|isopropylmalate synthetase activity|alpha-IPM synthetase activity|3-carboxy-3-hydroxy-4-methylpentanoate 3-methyl-2-oxobutanoate-lyase (CoA-acetylating) activity|acetyl-CoA:3-methyl-2-oxobutanoate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)|alpha-isopropylmalic synthetase activity EC:2.3.3.13|MetaCyc:2-ISOPROPYLMALATESYN-RXN|RHEA:21524|KEGG_REACTION:R01213 Note that this function was formerly EC:4.1.3.12. molecular_function owl:Class GO:0102544 biolink:NamedThing ornaline synthase activity Catalysis of the reaction: L-ornithinium(1+) + 2-oxoglutarate + NADPH + H+ <=> ornaline + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14880 molecular_function owl:Class GO:0034532 biolink:NamedThing 2-hydroxy-7-hydroxymethylchromene-2-carboxylate isomerase activity Catalysis of the reaction: 2-hydroxy-7-hydroxymethylchromene-2-carboxylate = 2-hydroxy-4-hydroxymethylbenzalpyruvate. tmpzr1t_l9r_go_relaxed.owl EC:5.3.99.-|UM-BBD_reactionID:r0765 molecular_function owl:Class GO:0047070 biolink:NamedThing 3-carboxyethylcatechol 2,3-dioxygenase activity Catalysis of the reaction: O2 + 3-(2,3-dihydroxyphenyl)propanoate = 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxy-beta-phenylpropionic dioxygenase activity|3-(2,3-dihydroxyphenyl)propanoate:oxygen 1,2-oxidoreductase activity|2,3-dihydroxy-beta-phenylpropionate oxygenase activity|3-(2,3-dihydroxyphenyl)propanoate:oxygen 1,2-oxidoreductase (decyclizing) RHEA:23840|EC:1.13.11.16|MetaCyc:1.13.11.16-RXN GO:0008669 molecular_function owl:Class GO:0033831 biolink:NamedThing kojibiose phosphorylase activity Catalysis of the reaction: kojibiose + phosphate = beta-D-glucose 1-phosphate + D-glucose. tmpzr1t_l9r_go_relaxed.owl 2-alpha-D-glucosyl-D-glucose:phosphate beta-D-glucosyltransferase activity EC:2.4.1.230|KEGG_REACTION:R07264|MetaCyc:2.4.1.230-RXN|RHEA:11176 molecular_function owl:Class GO:0008096 biolink:NamedThing juvenile hormone epoxide hydrolase activity Catalysis of the hydrolysis of the epoxide in a juvenile hormone to the corresponding diol. tmpzr1t_l9r_go_relaxed.owl EC:3.3.2.- molecular_function owl:Class GO:0001730 biolink:NamedThing 2'-5'-oligoadenylate synthetase activity Catalysis of the reaction: ATP = pppA(2'p5'A)n oligomers. This reaction requires the binding of double-stranded RNA. tmpzr1t_l9r_go_relaxed.owl 2-5A synthetase activity|2'-5' oligoadenylate synthetase activity|oligo-2',5'-adenylate synthetase activity|(2-5')oligo(A) synthetase activity EC:2.7.7.84|Reactome:R-HSA-8985104|Reactome:R-HSA-8983680|MetaCyc:RXN-13648|Reactome:R-HSA-8985091|MetaCyc:RXN-10798|RHEA:34407 molecular_function owl:Class GO:0140680 biolink:NamedThing histone H3-di/monomethyl-lysine-36 demethylase activity Catalysis of the removal of a methyl group from a di- or a monomethyl-lysine residue at position 36 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate. tmpzr1t_l9r_go_relaxed.owl histone H3K36me demethylase activity|histone H3K36me2 demethylase activity https://github.com/geneontology/go-ontology/issues/21089 RHEA:42032|MetaCyc:RXN-8661|EC:1.14.11.27 pg 2021-07-08T14:12:22Z molecular_function owl:Class GO:0031749 biolink:NamedThing D2 dopamine receptor binding Binding to a D2 dopamine receptor. tmpzr1t_l9r_go_relaxed.owl D2 dopamine receptor ligand molecular_function owl:Class GO:0047723 biolink:NamedThing inosinate nucleosidase activity Catalysis of the reaction: H(2)O + IMP = D-ribose 5-phosphate + hypoxanthine. tmpzr1t_l9r_go_relaxed.owl 5'-inosinate phosphoribohydrolase activity RHEA:20469|EC:3.2.2.12|MetaCyc:INOSINATE-NUCLEOSIDASE-RXN|KEGG_REACTION:R01128 molecular_function owl:Class GO:0047352 biolink:NamedThing adenylylsulfate-ammonia adenylyltransferase activity Catalysis of the reaction: 5'-adenylyl sulfate + NH(4)(+) = adenosine 5'-phosphoramidate + 2 H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl APSAT|adenylylsulfate:ammonia adenylyltransferase activity|adenylylsulphate-ammonia adenylyltransferase activity RHEA:19197|EC:2.7.7.51|MetaCyc:2.7.7.51-RXN|KEGG_REACTION:R01619 molecular_function owl:Class GO:0034554 biolink:NamedThing 3,3',5-tribromobisphenol A reductive dehalogenase activity Catalysis of the reaction: 3,3',5-tribromobisphenol A + 2 H+ + 2 e- = 3,3'-dibromobisphenol A + HBr. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0842 molecular_function owl:Class GO:0005025 biolink:NamedThing transforming growth factor beta receptor activity, type I Combining with a complex of transforming growth factor beta and a type II TGF-beta receptor to initiate a change in cell activity; upon binding, acts as a downstream transducer of TGF-beta signals. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta ligand binding to type I receptor|type I TGF-beta receptor activity|type I TGFbeta receptor activity|type I transforming growth factor beta receptor activity molecular_function owl:Class GO:0080119 biolink:NamedThing ER body organization A process that is carried out at the cellular level which results in the formation of ER (endoplasmic reticulum) body. ER body is a compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species. tmpzr1t_l9r_go_relaxed.owl ER body organization and biogenesis|endoplasmic reticulum body organization and biogenesis|endoplasmic reticulum body organization|ER body organisation dhl 2009-04-27T04:01:26Z biological_process owl:Class GO:1990075 biolink:NamedThing periciliary membrane compartment A plasma membrane region adjacent to the base of eukaryotic cilia and flagella that is enriched in endocytosis-associated proteins and vesicles and that appears to regulate ciliary membrane homeostasis. tmpzr1t_l9r_go_relaxed.owl PCMC pr 2013-04-24T10:14:50Z cellular_component owl:Class GO:0010790 biolink:NamedThing meiotic sister chromatid cohesion involved in meiosis II The cell cycle process in which sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis II. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018781 biolink:NamedThing S-triazine hydrolase activity Catalysis of the reaction: 1-halo or 1-pseudohalo-S-triazine = 1-hydroxy-S-triazine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0091 molecular_function owl:Class GO:0008660 biolink:NamedThing 1-aminocyclopropane-1-carboxylate deaminase activity Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + H(2)O = 2-oxobutanate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl ACC deaminase activity|1-aminocyclopropane carboxylic acid deaminase activity|1-aminocyclopropane-1-carboxylate aminohydrolase (isomerizing)|1-aminocyclopropane-1-carboxylate endolyase (deaminating) activity UM-BBD_reactionID:r0357|KEGG_REACTION:R00997|EC:3.5.99.7|MetaCyc:4.1.99.4-RXN|RHEA:16933 Note that this function was formerly EC:4.1.99.4. GO:0018806 molecular_function owl:Class GO:0050742 biolink:NamedThing protein-FMN linkage via S-(4a-FMN)-L-cysteine The formation of a protein-FMN linkage via S-(4a-FMN)-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0351 biological_process owl:Class GO:0102421 biolink:NamedThing curcumin-4'-O-beta-D-gentiobioside 1,6-glucosyltransferase activity Catalysis of the reaction: curcumin 4'-O-beta-D-gentiobioside + UDP-alpha-D-glucose <=> curcumin 4'-O-beta-D-gentiotrioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13813 molecular_function owl:Class GO:0036457 biolink:NamedThing keratohyalin granule A cytoplasmic, non-membrane bound granule of, at least, keratinocyte. Associated to keratin intermediate filaments and partially crosslinked to the cell envelope. tmpzr1t_l9r_go_relaxed.owl bf 2013-12-09T13:04:09Z cellular_component owl:Class GO:0120026 biolink:NamedThing host cell uropod A host cell membrane projection with related cytoskeletal components at the trailing edge of a cell in the process of migrating or being activated, found on the opposite side of the cell from the leading edge or immunological synapse, respectively. tmpzr1t_l9r_go_relaxed.owl host cell uropodium krc 2017-03-22T21:33:31Z cellular_component owl:Class GO:0061481 biolink:NamedThing response to TNF agonist Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a TNF agonist stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2012-11-07T09:14:07Z biological_process owl:Class GO:1905217 biolink:NamedThing response to astaxanthin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an astaxanthin stimulus. tmpzr1t_l9r_go_relaxed.owl response to (3S,3'S)-3,3'-dihydroxy-beta,beta-carotene-4,4'-dione sl 2016-06-06T21:30:00Z biological_process owl:Class GO:0047427 biolink:NamedThing cyanoalanine nitrilase activity Catalysis of the reaction: 3-cyano-L-alanine + 2 H(2)O + H(+) = L-aspartate + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl 3-cyano-L-alanine aminohydrolase activity|beta-cyanoalanine nitrilase activity RHEA:11188|EC:3.5.5.4|KEGG_REACTION:R00486|MetaCyc:3.5.5.4-RXN molecular_function owl:Class GO:0102081 biolink:NamedThing homotaurine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: homotaurine + 2-oxoglutarate(2-) <=> 3-sulfopropanal + L-glutamate(1-). tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10822 molecular_function owl:Class GO:0016996 biolink:NamedThing endo-alpha-(2,8)-sialidase activity Catalysis of the endohydrolysis of (2->8)-alpha-sialosyl linkages in oligo- or poly(sialic) acids. tmpzr1t_l9r_go_relaxed.owl endoneuraminidase activity|alpha-2,8-sialosylhydrolase activity|endosialidase activity|polysialoside (2->8)-alpha-sialosylhydrolase activity|poly(alpha-2,8-sialoside) alpha-2,8-sialosylhydrolase activity|endo-N-acylneuraminidase activity|endo-N-acetylneuraminidase activity|poly(alpha-2,8-sialosyl) endo-N-acetylneuraminidase activity EC:3.2.1.129|MetaCyc:3.2.1.129-RXN molecular_function owl:Class GO:0034818 biolink:NamedThing ADD 9alpha-hydroxylase activity Catalysis of the reaction: androsta-1,4-diene-3,17-dione + reduced ferredoxin + O2 = 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + H2O + oxidized ferredoxin. tmpzr1t_l9r_go_relaxed.owl EC:1.14.15.-|UM-BBD_reactionID:r1149 molecular_function owl:Class GO:0034768 biolink:NamedThing (E)-beta-ocimene synthase activity Catalysis of the reaction: geranyl diphosphate = (E)-beta-ocimene + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:32691|EC:4.2.3.106|MetaCyc:RXN-5109 molecular_function owl:Class GO:0008792 biolink:NamedThing arginine decarboxylase activity Catalysis of the reaction: L-arginine + H(+) = agmatine + CO(2). tmpzr1t_l9r_go_relaxed.owl L-arginine carboxy-lyase activity|SpeA|L-arginine carboxy-lyase (agmatine-forming) MetaCyc:ARGDECARBOX-RXN|EC:4.1.1.19|KEGG_REACTION:R00566|RHEA:17641|Reactome:R-HSA-350598 molecular_function owl:Class GO:0003117 biolink:NamedThing regulation of vasoconstriction by circulating norepinephrine Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of secretion of norepinephrine into the bloodstream. tmpzr1t_l9r_go_relaxed.owl regulation of vasoconstriction by circulating noradrenaline biological_process owl:Class GO:0052899 biolink:NamedThing N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity Catalysis of the reaction: H(2)O + N(1),N(12)-diacetylspermine + O(2) = 3-acetamidopropanal + H(2)O(2) + N(1)-acetylspermidine. tmpzr1t_l9r_go_relaxed.owl polyamine oxidase activity|N(1)-acetylpolyamine oxidase activity EC:1.5.3.13|RHEA:25868|MetaCyc:RXN-10460 molecular_function owl:Class GO:0018401 biolink:NamedThing peptidyl-proline hydroxylation to 4-hydroxy-L-proline The modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0030 See also the molecular function term 'procollagen-proline 4-dioxygenase activity ; GO:0004656'. biological_process owl:Class GO:0008123 biolink:NamedThing cholesterol 7-alpha-monooxygenase activity Catalysis of the reaction: cholesterol + NADPH + H+ + O2 = 7-alpha-hydroxycholesterol + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl cholesterol 7-alpha-hydroxylase activity|cholesterol 7alpha-monooxygenase activity|cholesterol 7alpha-hydroxylase activity|cholesterol,NADPH:oxygen oxidoreductase (7alpha-hydroxylating)|cytochrome P450 CYP7A1 MetaCyc:CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN|EC:1.14.14.23|Reactome:R-HSA-192051|RHEA:21812 molecular_function owl:Class GO:0039564 biolink:NamedThing suppression by virus of host JAK-STAT cascade via inhibition of STAT2 activity Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of a JAK-STAT signal cascade in a host organism by reducing the activity of host STAT2 (signal transducer and activator of transcription 2). tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host STAT2 activity|suppression by virus of host STAT2 activity|inhibition of host STAT2 by virus https://github.com/geneontology/go-ontology/issues/21963 bf 2012-03-12T02:52:34Z biological_process owl:Class GO:0097371 biolink:NamedThing MDM2/MDM4 family protein binding Binding to a member of the MDM2/MDM4 protein family, comprising negative regulators of p53. tmpzr1t_l9r_go_relaxed.owl pr 2012-08-08T16:20:59Z molecular_function owl:Class GO:0055051 biolink:NamedThing ATP-binding cassette (ABC) transporter complex, integrated substrate binding A complex for the transport of metabolites out of the cell, consisting of 4 domains: two ATP-binding domains and two membrane spanning domains. In some cases, all 4 domains are contained on 1 polypeptide, while in others one ATP-binding domain and one membrane spanning domain are together on one polypeptide in what is called a half transporter. Two half-transporters come together to form a functional transporter. Transport of the substrate across the membrane is driven by the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0003847 biolink:NamedThing 1-alkyl-2-acetylglycerophosphocholine esterase activity Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate. tmpzr1t_l9r_go_relaxed.owl 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine acetylhydrolase activity|PAF acetylhydrolase activity|2-acetyl-1-alkylglycerophosphocholine esterase activity|1-alkyl-2-acetyl-sn-glycero-3-phosphocholine acetohydrolase activity|LDL-associated phospholipase A(2) activity|alkylacetyl-GPC:acetylhydrolase activity|LDL-PLA(2) activity|PAF 2-acylhydrolase activity|LDL-PLA2|platelet-activating factor acetylhydrolase activity|LDL-associated phospholipase A2 MetaCyc:3.1.1.47-RXN|RHEA:17777|EC:3.1.1.47|Reactome:R-HSA-8869206 molecular_function owl:Class GO:0016024 biolink:NamedThing CDP-diacylglycerol biosynthetic process The chemical reactions and pathways resulting in the formation of CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. tmpzr1t_l9r_go_relaxed.owl CDP-diacylglycerol biosynthesis|CDP-diacylglycerol formation|CDP-diacylglycerol anabolism|CDP-diacylglycerol synthesis biological_process owl:Class GO:0042564 biolink:NamedThing NLS-dependent protein nuclear import complex A dimer consisting of an alpha and a beta-subunit that imports proteins with an NLS into the nucleus through a nuclear pore. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097275 biolink:NamedThing cellular ammonium homeostasis Any biological process involved in the maintenance of an internal steady state of ammonium at the level of the cell. tmpzr1t_l9r_go_relaxed.owl cellular ammonia homeostasis pr 2012-03-22T02:54:38Z biological_process owl:Class GO:0047242 biolink:NamedThing hydroxyanthraquinone glucosyltransferase activity Catalysis of the reaction: a hydroxyanthraquinone + UDP-D-glucose = a glucosyloxyanthraquinone + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:hydroxyanthraquinone O-glucosyltransferase activity|anthraquinone-specific glucosyltransferase activity|UDP-glucose:hydroxyanthraquinone O-glucosyltransferase activity|uridine diphosphoglucose-anthraquinone glucosyltransferase activity MetaCyc:2.4.1.181-RXN|EC:2.4.1.181 molecular_function owl:Class GO:0047701 biolink:NamedThing beta-L-arabinosidase activity Catalysis of the reaction: H2O + a beta-L-arabinoside = L-arabinose + an alcohol. tmpzr1t_l9r_go_relaxed.owl vicianosidase activity|beta-L-arabinoside arabinohydrolase activity|b-L-arabinosidase activity MetaCyc:BETA-L-ARABINOSIDASE-RXN|EC:3.2.1.88 molecular_function owl:Class GO:0009915 biolink:NamedThing phloem sucrose loading The process of loading sucrose into the sieve tube or companion cell of the phloem for long distance transport from source to sink. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004648 biolink:NamedThing O-phospho-L-serine:2-oxoglutarate aminotransferase activity Catalysis of the reaction: O-phospho-L-serine + 2-oxoglutarate = 3-phosphonooxypyruvate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl 3-O-phospho-L-serine:2-oxoglutarate aminotransferase activity|PSAT activity|hydroxypyruvic phosphate--glutamic transaminase activity|SerC|L-phosphoserine aminotransferase activity|3PHP transaminase activity|PdxC|phosphohydroxypyruvate transaminase activity|3-phosphoserine aminotransferase activity|phosphoserine aminotransferase activity|phosphohydroxypyruvic--glutamic transaminase activity|phosphoserine transaminase activity Reactome:R-HSA-977333|MetaCyc:PSERTRANSAM-RXN|EC:2.6.1.52|RHEA:14329 GO:0004646 molecular_function owl:Class GO:0044689 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity Catalysis of the reaction: 5-amino-6-(D-ribitylamino)uracil + 4-hydroxyphenylpyruvate + 2 S-adenosyl-L-methionine + H2O = 7,8-didemethyl-8-hydroxy-5-deazariboflavin + 2 5'-deoxyadenosine + 2 L-methionine + oxalate + ammonia + 4 H+. tmpzr1t_l9r_go_relaxed.owl FO synthase EC:2.5.1.147|MetaCyc:RXN-8079 jl 2012-08-15T14:33:17Z molecular_function owl:Class GO:0016852 biolink:NamedThing sirohydrochlorin cobaltochelatase activity Catalysis of the reaction: sirohydrochlorin + Co2+ = cobalt-sirohydrochlorin + 2 H+. tmpzr1t_l9r_go_relaxed.owl sirohydrochlorin cobalt-lyase activity|CbiX|cobalt-sirohydrochlorin cobalt-lyase (sirohydrochlorin-forming)|CbiK|anaerobic cobalt chelatase activity|CbiXS MetaCyc:4.99.1.3-RXN|RHEA:15893|EC:4.99.1.3 molecular_function owl:Class GO:0044540 biolink:NamedThing L-cystine L-cysteine-lyase (deaminating) Catalysis of the reaction: L-cystine + H2O <=> pyruvate + NH3 + thiocysteine. Thiocysteine is also known as cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R02408|RHEA:24927|EC:4.4.1.1 jl 2012-03-22T11:33:32Z molecular_function owl:Class GO:0001632 biolink:NamedThing leukotriene B4 receptor activity Combining with leukotriene B4, LTB4, to initiate a change in cell activity. Leukotriene B4 is also known as (6Z, 8E, 10E, 14Z)-(5S, 12R)-5,12-dihydroxyicosa-6,8,10,14-tetraen-1-oate. tmpzr1t_l9r_go_relaxed.owl BLT receptor molecular_function owl:Class GO:0000450 biolink:NamedThing cleavage of bicistronic rRNA transcript (SSU-rRNA, LSU-rRNA) Endonucleolytic cleavage of pre-rRNAs originally produced as a bicistronic rRNA transcript that contains the SSU-rRNA and the LSU-rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with two genes in this order are produced in Archaeal species. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0103069 biolink:NamedThing 17-hydroxyprogesterone 21-hydroxylase activity Catalysis of the reaction: 17alpha-hydroxyprogesterone + O2 + reduced [NADPH--hemoprotein reductase] = 11-deoxycortisol + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl RHEA:50308|MetaCyc:RXN66-356 molecular_function owl:Class GO:0102918 biolink:NamedThing (R)-reticuline 7-O-methyltransferase activity Catalysis of the reaction: (R)-reticulinium(1+) + S-adenosyl-L-methionine <=> (R)-laudanine(1+) + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:38907|EC:2.1.1.291|MetaCyc:RXN-8701 molecular_function owl:Class GO:0050464 biolink:NamedThing nitrate reductase (NADPH) activity Catalysis of the reaction: nitrite + NADP+ + H2O = nitrate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH:nitrate reductase activity|assimilatory NADPH-nitrate reductase activity|NADPH-nitrate reductase activity|triphosphopyridine nucleotide-nitrate reductase activity|nitrate reductase (NADPH2)|nitrate reductase (NADPH(2)) activity|nitrite:NADP+ oxidoreductase activity|assimilatory nitrate reductase activity|NADPH:nitrate oxidoreductase activity|assimilatory reduced nicotinamide adenine dinucleotide phosphate-nitrate reductase activity MetaCyc:NITRATE-REDUCTASE-NADPH-RXN|EC:1.7.1.3|RHEA:19061 molecular_function owl:Class GO:0019836 biolink:NamedThing hemolysis by symbiont of host erythrocytes The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl haemolysis in host|pathogenesis|hemolysis by symbiont of host red blood cells|regulation of cytolysis of host cells by symbiont|hemolysis by symbiont of host RBCs|hemolysin activity biological_process owl:Class GO:0046703 biolink:NamedThing natural killer cell lectin-like receptor binding Binding to a lectin-like natural killer cell receptor. tmpzr1t_l9r_go_relaxed.owl KLRC4 receptor binding|NKG2D receptor binding|NK cell lectin-like receptor binding molecular_function owl:Class GO:0009344 biolink:NamedThing nitrite reductase complex [NAD(P)H] Complex that possesses nitrite reductase [NAD(P)H] activity. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'nitrite reductase [NAD(P)H] activity ; GO:0008942'. cellular_component owl:Class GO:0102992 biolink:NamedThing 2-methylbutyronitrile hydroxylase activity Catalysis of the reaction: H+ + 2-methylbutyronitrile + NADPH + O2 <=> H2O + NADP + 2-hydroxy-2-methylbutyronitrile. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9642|RHEA:51948 molecular_function owl:Class GO:0102267 biolink:NamedThing tRNA-dihydrouridine20b synthase activity Catalysis of the reaction: a 5,6-dihydrouracil20b in tRNA + NAD(P) <=> H+ + a uracil20b in tRNA + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12476 molecular_function owl:Class GO:0008579 biolink:NamedThing JUN kinase phosphatase activity Catalysis of the reaction: JUN kinase serine/threonine/tyrosine phosphate + H2O = JUN kinase serine/threonine/tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0000933 biolink:NamedThing adventitious septum A cell septum whose formation is independent of nuclear division. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102514 biolink:NamedThing cyanidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-feruloyl-beta-D-glucose <=> cyanidin 3,7-di-O-beta-D-glucoside betaine + ferulate + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.300|MetaCyc:RXN-14446 molecular_function owl:Class GO:0034570 biolink:NamedThing hydroxymonomethylisoproturon dimethylaminedehydrogenase activity Catalysis of the reaction: hydroxymonodemethylisoproturon + H2O = formaldehyde + 4'-(2-hydroxyisopropyl)phenylurea + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0894|EC:1.5.99.- molecular_function owl:Class GO:1990358 biolink:NamedThing xylanosome A multifunctional supermolecular complex, containing several proteins with hemicellulase activity. Functions to hydrolyze hemicellulose. tmpzr1t_l9r_go_relaxed.owl xylanolytic complex tt 2014-04-05T18:08:54Z cellular_component owl:Class GO:0030848 biolink:NamedThing threo-3-hydroxyaspartate ammonia-lyase activity Catalysis of the reaction: (3S)-3-hydroxy-L-aspartate = NH(4)(+) + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl L-threo-3-hydroxyaspartate dehydratase activity|threo-3-hydroxy-L-aspartate ammonia-lyase (oxaloacetate-forming)|3-hydroxyaspartate dehydratase activity|threo-3-hydroxy-L-aspartate ammonia-lyase activity|threo-3-hydroxyaspartate dehydratase activity KEGG_REACTION:R05758|MetaCyc:4.3.1.16-RXN|RHEA:12424|EC:4.3.1.16 molecular_function owl:Class GO:0102711 biolink:NamedThing gibberellin A25,oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A25 + 2-oxoglutarate + O2 <=> gibberellin A13 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-6541 molecular_function owl:Class GO:0038173 biolink:NamedThing interleukin-17A-mediated signaling pathway A series of molecular signals initiated by the binding of interleukin-17A to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl interleukin-17A signaling pathway|interleukin-17A-mediated signalling pathway|IL17A signaling pathway|IL-17A-mediated signaling pathway bf 2012-06-12T10:59:01Z biological_process owl:Class GO:0102801 biolink:NamedThing anthocyanin 5-O-glucoside-4'''-O-malonyltransferase activity Catalysis of the reaction: 4'''-demalonylsalvianin + malonyl-CoA = salvianin + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8139|EC:2.3.1.214|RHEA:35515 molecular_function owl:Class GO:0090430 biolink:NamedThing caffeoyl-CoA: alcohol caffeoyl transferase activity Catalysis of the reaction: caffeoyl-CoA + a saturated primary alcohol = an alkyl caffeate + CoA. tmpzr1t_l9r_go_relaxed.owl tb 2012-07-25T10:48:15Z molecular_function owl:Class GO:0008430 biolink:NamedThing selenium binding Binding to a selenium (Se) ion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047641 biolink:NamedThing aldose-6-phosphate reductase (NADPH) activity Catalysis of the reaction: D-glucitol 6-phosphate + NADP(+) = D-glucose 6-phosphate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl NADP-dependent D-sorbitol-6-phosphate dehydrogenase activity|alditol 6-phosphate:NADP 1-oxidoreductase activity|aldose 6-phosphate reductase activity|D-aldose-6-phosphate:NADP+ 1-oxidoreductase activity|NADP-dependent aldose 6-phosphate reductase activity|aldose-6-P reductase activity|A6PR|aldose-6-phosphate reductase activity MetaCyc:ALDOSE-6-PHOSPHATE-REDUCTASE-NADPH-RXN|RHEA:20037|EC:1.1.1.200|KEGG_REACTION:R00834 molecular_function owl:Class GO:0030109 biolink:NamedThing HLA-B specific inhibitory MHC class I receptor activity Combining with a MHC class I molecule of the HLA-B subclass to mediate signaling that inhibits activation of a lymphocyte. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008254 biolink:NamedThing 3'-nucleotidase activity Catalysis of the reaction: a 3'-ribonucleotide + H2O = a ribonucleoside + phosphate. tmpzr1t_l9r_go_relaxed.owl 3'-ribonucleotide phosphohydrolase activity|3'-phosphatase activity|3'-ribonucleotidase activity|3' nucleotidase activity|3'-mononucleotidase activity EC:3.1.3.6|RHEA:10144|MetaCyc:3-NUCLEOTID-RXN molecular_function owl:Class GO:0102875 biolink:NamedThing 1-18:2-2-18:2-monogalactosyldiacylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-18:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-18:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8366|EC:1.14.19.35 molecular_function owl:Class GO:0030791 biolink:NamedThing arsenite methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + arsenite = S-adenosyl-L-homocysteine + methylarsonate. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:methylarsonite As-methyltransferase activity|S-adenosyl-L-methionine:arsenite As-methyltransferase activity|S-adenosyl-L-methionine:arsenic(III) methyltransferase activity Reactome:R-HSA-5696213|RHEA:15293|MetaCyc:2.1.1.137-RXN|Reactome:R-HSA-5696220|UM-BBD_reactionID:r0805|EC:2.1.1.137 Note that the enzyme arsenite methyltransferase also has methylarsonite methyltransferase activity (GO:0030792). molecular_function owl:Class GO:0044739 biolink:NamedThing positive regulation of acid-sensing ion channel in other organism Any process in which an organism positively regulates the activity of a voltage-gated sodium channel in another organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of ASIC channel in other organism jl 2012-11-06T16:56:27Z biological_process owl:Class GO:0070702 biolink:NamedThing inner mucus layer The inner of two mucus layers secreted by epithelial cells in the colon; the inner mucus layer is firmly attached to the epithelium, is densely packed with a compact stratified appearance and is devoid of bacteria. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-08T02:38:55Z cellular_component owl:Class GO:0102122 biolink:NamedThing gibberellin A34 carboxyl methyltransferase activity Catalysis of the reaction: gibberellin A34 + S-adenosyl-L-methionine = gibberellin A34 methyl ester + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11384|RHEA:36127 molecular_function owl:Class GO:1901169 biolink:NamedThing 3-chlorocatechol biosynthetic process The chemical reactions and pathways resulting in the formation of 3-chlorocatechol. tmpzr1t_l9r_go_relaxed.owl 3-chlorocatechol synthesis|3-chlorocatechol formation|3-chlorocatechol anabolism|3-chlorocatechol biosynthesis yaf 2012-07-19T09:33:45Z biological_process owl:Class GO:0072645 biolink:NamedThing interferon-delta production The appearance of interferon-delta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IFN-delta production|IFND production|interferon-delta secretion Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072646 biological_process owl:Class GO:0034908 biolink:NamedThing 2-chloro-N-isopropylacetanilide 1,2-dioxygenase activity Catalysis of the reaction: 2-chloro-N-isopropylacetanilide + O2 + 2 H+ + NADH = 2-chloro-N-isopropylacetamide + catechol + NAD+. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0724 molecular_function owl:Class GO:0033698 biolink:NamedThing Rpd3L complex A histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, an Sds-3 family protein, a SIN3 family co-repressor, a WD repeat protein, and a zf- PHD finger (Clr6, Sds3, Pst1, Prw1, Png2 in Schizosaccharomyces pombe; Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p and Ash1p in Saccharomyces cerevisiae). tmpzr1t_l9r_go_relaxed.owl Rpd3C(L)|Clr6 histone deacetylase complex I/I'|Clr6L complex GO:0000508 cellular_component owl:Class GO:0070388 biolink:NamedThing procollagen-proline 4-dioxygenase complex, alpha(III) type A procollagen-proline 4-dioxygenase complex that contains alpha subunits of the type III isoform. tmpzr1t_l9r_go_relaxed.owl prolyl 4-hydroxylase complex (alpha(III)-type)|procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, alpha(III) type cellular_component owl:Class GO:0047990 biolink:NamedThing hydroxyglutamate decarboxylase activity Catalysis of the reaction: 3-hydroxy-L-glutamate + H(+) = 4-amino-3-hydroxybutanoate + CO(2). tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-L-glutamate 1-carboxy-lyase (4-amino-3-hydroxybutanoate-forming)|3-hydroxy-L-glutamate 1-carboxy-lyase activity KEGG_REACTION:R04135|RHEA:14073|MetaCyc:HYDROXYGLUTAMATE-DECARBOXYLASE-RXN|EC:4.1.1.16 molecular_function owl:Class GO:0106329 biolink:NamedThing L-phenylalaine oxidase activity Catalysis of the reaction: H2O + L-phenylalanine + O2 = 3-phenylpyruvate + H2O2 + NH4(+). tmpzr1t_l9r_go_relaxed.owl RHEA:61240 hjd 2020-09-30T19:33:52Z molecular_function owl:Class GO:0047033 biolink:NamedThing 15-hydroxyprostaglandin-I dehydrogenase (NADP+) activity Catalysis of the reaction: NADP(+) + prostaglandin I(2) = 15-dehydro-prostaglandin I(2) + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (5Z,13E)-(15S)-6,9alpha-epoxy-11alpha,15-dihydroxyprosta-5,13-dienoate:NADP+ 15-oxidoreductase activity|prostacyclin dehydrogenase activity|NADP+-dependent PGI2-specific 15-hydroxyprostaglandin dehydrogenase activity|NADP-linked 15-hydroxyprostaglandin (prostacyclin) dehydrogenase activity|PG I2 dehydrogenase activity MetaCyc:1.1.1.231-RXN|KEGG_REACTION:R03520|RHEA:21420|EC:1.1.1.231 molecular_function owl:Class GO:0097074 biolink:NamedThing interferon regulatory factor 7 complex An interferon regulatory factor complex that consists of a homodimer of interferon regulatory factor 7. tmpzr1t_l9r_go_relaxed.owl IRF7:IRF7 complex pr 2011-06-15T04:31:04Z cellular_component owl:Class GO:0097657 biolink:NamedThing 3',5'-nucleotide bisphosphate phosphatase activity Catalysis of the reaction: 3',5'-nucleoside bisphosphate + H20 = 5'-nucleoside monophosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:43532|EC:3.1.3.97 pr 2014-09-25T11:21:39Z molecular_function owl:Class GO:0047445 biolink:NamedThing 3-hydroxy-3-isohexenylglutaryl-CoA lyase activity Catalysis of the reaction: 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA + 4 H(+) = 7-methyl-3-oxooct-6-enoyl-CoA + acetate. tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase activity|hydroxyisohexenylglutaryl-CoA:acetatelyase activity|3-hydroxy-3-isohexenylglutaryl coenzyme A lyase activity|3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase (7-methyl-3-oxooct-6-enoyl-CoA-forming)|3-hydroxy-3-isohexenylglutaryl-CoA isopentenylacetoacetyl-CoA-lyase activity|beta-hydroxy-beta-isohexenylglutaryl CoA-lyase activity KEGG_REACTION:R08090|UM-BBD_reactionID:r1168|RHEA:23084|MetaCyc:4.1.3.26-RXN|EC:4.1.3.26 molecular_function owl:Class GO:0004083 biolink:NamedThing bisphosphoglycerate 2-phosphatase activity Catalysis of the reaction: 2,3-bisphospho-D-glycerate + H(2)O = 3-phospho-D-glycerate + phosphate. tmpzr1t_l9r_go_relaxed.owl 2,3-bisphospho-D-glycerate 2-phosphohydrolase activity KEGG_REACTION:R01516|RHEA:21904|MetaCyc:BISPHOSPHOGLYCERATE-PHOSPHATASE-RXN molecular_function owl:Class GO:0103009 biolink:NamedThing 3-chlorotoluene monooxygenase activity Catalysis of the reaction: H+ + 3-chlorotoluene + NADH + O2 <=> 3-chlorobenzyl alcohol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9908 molecular_function owl:Class GO:0085039 biolink:NamedThing hyphal membrane A host-derived membrane surrounding the symbiont hypha during infection. tmpzr1t_l9r_go_relaxed.owl extra-invasive hyphal membrane https://github.com/geneontology/go-ontology/issues/19013 jl 2010-07-27T04:19:46Z cellular_component owl:Class GO:1990327 biolink:NamedThing collagen type XXV trimer A collagen homotrimer of alpha1(XXV) chains; type XXV collagen triple helices span the plasma membrane. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-17T09:28:50Z cellular_component owl:Class GO:0004797 biolink:NamedThing thymidine kinase activity Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate. tmpzr1t_l9r_go_relaxed.owl deoxythymidine kinase (phosphorylating)|2'-deoxythymidine kinase activity|ATP:thymidine 5'-phosphotransferase activity|thymidine kinase (phosphorylating) MetaCyc:THYKI-RXN|EC:2.7.1.21|RHEA:19129 molecular_function owl:Class GO:0008257 biolink:NamedThing protein histidine tele-kinase activity Catalysis of the reaction: ATP + protein L-histidine = ADP + protein N(tau)-phospho-L-histidine. tmpzr1t_l9r_go_relaxed.owl protein-histidine tele-kinase activity|HK3|ATP:protein-L-histidine N-tele-phosphotransferase activity|ATP:protein-L-histidine Ntau-phosphotransferase activity MetaCyc:2.7.13.2-RXN|RHEA:11860|EC:2.7.13.2 molecular_function owl:Class GO:0080074 biolink:NamedThing spermidine:caffeoyl CoA N-acyltransferase activity Catalysis of the transfer of a caffeoyl group to a nitrogen atom on the spermidine molecule. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T04:17:23Z molecular_function owl:Class GO:0106377 biolink:NamedThing 2-hydroxy-ATP hydrolase activity Catalysis of the reaction: 2-hydroxy-ATP + H2O = 2-hydroxy-AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl hjd 2021-04-23T00:12:31Z molecular_function owl:Class GO:0044609 biolink:NamedThing DBIRD complex A protein complex that associates with mRNP particles and RNA polymerase II and is proposed to integrate transcript elongation with the regulation of alternative splicing. In humans it is composed of the proteins KIAA1967/DBC1 and ZNF326/ZIRD. tmpzr1t_l9r_go_relaxed.owl jl 2012-05-30T03:04:23Z cellular_component owl:Class GO:0102924 biolink:NamedThing gibberellin A44,2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: 2 H+ + gibberellin A44 + 2-oxoglutarate + O2 = gibberellin A98 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-886 molecular_function owl:Class GO:0051939 biolink:NamedThing gamma-aminobutyric acid import The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl gamma-aminobutyrate import|4-aminobutyrate import|gamma-aminobutyric acid uptake|GABA import biological_process owl:Class GO:0070765 biolink:NamedThing gamma-secretase complex A protein complex that has aspartic-type endopeptidase activity and contains a presenilin catalytic subunit (either PSEN1 or PSEN2), an APH1 subunit (multiple genes and splice variants exist), nicastrin (NCT), and presenilin enhancer (aka PEN-2 or Psenen), as the core complex. Variants of the complex with different subunit compositions differ in localization and specific substrates. Additionally, variants of the complex exist that contain a additional regulatory subunit as well as the four core subunits; known regulatory subunits include gamma-secretase-activating protein (aka gSAP), TMP1 (aka TMED10), and CD147 antigen (aka basigin). Gamma-secretase cleaves type I transmembrane protein substrates, including the cell surface receptor Notch and the amyloid-beta precursor protein. tmpzr1t_l9r_go_relaxed.owl presenilin complex|PS2 complex|PS1 complex|gamma-secretase complex (APH1B, PSEN2, PSENEN, NCSTN)|gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant)|CD147-gamma-secretase complex (APH-1a, PS-1, PEN-2, NCT variant)|gamma-secretase complex (APH1B, PSEN1, PSENEN, NCSTN)|gamma-secretase complex (APH1A, PSEN2, PSENEN, NCSTN) https://github.com/geneontology/go-ontology/issues/20317 mah 2009-06-29T01:33:19Z cellular_component owl:Class GO:0015492 biolink:NamedThing phenylalanine:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phenylalanine(out) + H+(out) = phenylalanine(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl phenylalanine:hydrogen symporter activity molecular_function owl:Class GO:0009955 biolink:NamedThing adaxial/abaxial pattern specification The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. tmpzr1t_l9r_go_relaxed.owl adaxial/abaxial pattern formation biological_process owl:Class GO:0004037 biolink:NamedThing allantoicase activity Catalysis of the reaction: allantoate + H(2)O = (S)-ureidoglycolate + urea. tmpzr1t_l9r_go_relaxed.owl allantoate amidinohydrolase activity|allantoine amidinohydrolase activity MetaCyc:ALLANTOICASE-RXN|RHEA:11016|EC:3.5.3.4|KEGG_REACTION:R02422 molecular_function owl:Class GO:0052596 biolink:NamedThing phenethylamine:oxygen oxidoreductase (deaminating) activity Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R02613|MetaCyc:AMINEPHEN-RXN|RHEA:25265|EC:1.4.3.21 molecular_function owl:Class GO:0097301 biolink:NamedThing regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter Any process that regulates the internal concentration of potassium ions at the level of a cell by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl potassium ion homeostasis by positive regulation of transcription from RNA polymerase II promoter|cellular potassium ion homeostasis by positive regulation of transcription from RNA polymerase II promoter pr 2012-05-09T09:03:02Z biological_process owl:Class GO:0007161 biolink:NamedThing calcium-independent cell-matrix adhesion The binding of a cell to the extracellular matrix via adhesion molecules that do not require the presence of calcium for the interaction. tmpzr1t_l9r_go_relaxed.owl calcium-independent cell adhesion molecule activity biological_process owl:Class GO:0062150 biolink:NamedThing amorpha-4,11-diene 12-monooxygenase activity Catalysis of the reaction:(+)-amorpha-4,11-diene + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = (+)-artemisinate + 4 H(+) + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase]. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.114|RHEA:32999 dph 2019-09-13T14:48:12Z molecular_function owl:Class GO:0005185 biolink:NamedThing neurohypophyseal hormone activity The action characteristic of a neurohypophyseal hormone, any of a family of structurally and functionally related nonapeptides that are synthesized as part of a larger precursor molecule comprising a signal peptide, the nonapeptide hormone, and a neurophysin. tmpzr1t_l9r_go_relaxed.owl neurohypophysial hormone activity molecular_function owl:Class GO:0018485 biolink:NamedThing salicylaldehyde dehydrogenase activity Catalysis of the reaction: salicylaldehyde + NAD+ + H2O = salicylate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl salicylaldehyde:NAD+ oxidoreductase activity MetaCyc:1.2.1.65-RXN|EC:1.2.1.65|UM-BBD_enzymeID:e0256|RHEA:18537 molecular_function owl:Class GO:0034428 biolink:NamedThing nuclear-transcribed mRNA catabolic process, exonucleolytic, 5'-3' The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 5' end is not protected by a 5'-cap; degradation proceeds in the 5' to 3' direction. tmpzr1t_l9r_go_relaxed.owl 5'-3' exonucleolytic nuclear-transcribed mRNA catabolic process biological_process owl:Class GO:0039552 biolink:NamedThing RIG-I binding Binding to RIG-I, a cytosolic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral RNA. tmpzr1t_l9r_go_relaxed.owl DDX58/RIG-I binding|DDX58 binding bf 2012-01-19T02:14:20Z molecular_function owl:Class GO:0097682 biolink:NamedThing intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity Enables the transmembrane transfer of cations by a channel that opens when phosphatidylinositol-3,5-bisphosphate has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl pr 2014-12-17T16:50:30Z molecular_function owl:Class GO:0050127 biolink:NamedThing N-carbamoylsarcosine amidase activity Catalysis of the reaction: N-carbamoylsarcosine + H(2)O + 2 H(+) = CO(2) + NH(4)(+) + sarcosine. tmpzr1t_l9r_go_relaxed.owl N-carbamoylsarcosine amidohydrolase activity|carbamoylsarcosine amidase activity|CSHase activity KEGG_REACTION:R01563|EC:3.5.1.59|RHEA:20057|MetaCyc:N-CARBAMOYLSARCOSINE-AMIDASE-RXN molecular_function owl:Class GO:0047017 biolink:NamedThing prostaglandin-F synthase activity Catalysis of the reaction: NADP+ + (5Z,13E)-(15S)-9-alpha,11-alpha,15-trihydroxyprosta-5,13-dienoate = NADPH + H+ + (5Z,13E)-(15S)-9-alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate. tmpzr1t_l9r_go_relaxed.owl prostaglandin-D(2) ketoreductase activity|prostaglandin F synthase activity|prostaglandin-D2 ketoreductase activity|PGD(2) 11-ketoreductase activity|prostaglandin-D(2) 11-reductase activity|prostaglandin D2-ketoreductase activity|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 11-oxidoreductase activity|prostaglandin-D2 11-ketoreductase activity|PGF synthetase activity|prostaglandin 11-ketoreductase activity|prostaglandin-D2 11-reductase activity|reductase, 15-hydroxy-11-oxoprostaglandin|prostaglandin 11-keto reductase activity|PGD2 11-ketoreductase activity|PGF2alpha synthetase activity|prostaglandin F synthetase activity|prostaglandin-D(2) 11-ketoreductase activity|NADPH-dependent prostaglandin D2 11-keto reductase activity|synthetase, prostaglandin F2alpha|prostaglandin-F synthetase activity MetaCyc:1.1.1.188-RXN|RHEA:10140|EC:1.1.1.188 molecular_function owl:Class GO:0061070 biolink:NamedThing female urethra development The progression of the female urethra over time from its initial formation to the mature structure. The female urethra is a renal system organ that carries urine from the bladder to outside the body, exiting above the vaginal opening. tmpzr1t_l9r_go_relaxed.owl dph 2010-03-12T08:29:43Z biological_process owl:Class GO:0052759 biolink:NamedThing coenzyme F420-dependent 2,4,6-trinitrophenol hydride reductase activity Catalysis of the reaction: trinitrophenol hydride Meisenheimer complex + H- = trinitrophenol dihydride Meisenheimer complex (aci form). Coenzyme F420 supplies the hydride (H-) in the reaction. tmpzr1t_l9r_go_relaxed.owl coenzyme F420-dependent 2,4,6-trinitrophenol-hydride-Meisenheimer-complex hydride transferase activity UM-BBD_reactionID:r1066|EC:1.3.99.- 2011-09-28T01:50:17Z molecular_function owl:Class GO:0031467 biolink:NamedThing Cul7-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul7 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 linker and an F-box protein. tmpzr1t_l9r_go_relaxed.owl SCF7 complex|CRL7 complex|cullin-RING ligase 7|CDL7 complex cellular_component owl:Class GO:0102113 biolink:NamedThing hypoxia-inducible factor-asparagine oxygenase activity Catalysis of the reaction: 2-oxoglutarate + O2 + a hypoxia inducible factor (HIF) alpha subunit = succinate + carbon dioxide + a (3S)-3-hydroxy-L-asparagine-HIF alpha subunit. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11321|RHEA:54268|EC:1.14.11.30 molecular_function owl:Class GO:0019672 biolink:NamedThing ethanol-acetate fermentation to butyrate and caproate The anaerobic chemical reactions and pathways resulting in the breakdown of ethanol and acetate to butyrate and caproate, yielding energy in the form of ATP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044876 biolink:NamedThing hercynylselenocysteine synthase Catalysis of the reaction: 2 L-selenocysteine + 2 hercynine + O2 <=> 2 H2O + 2 hercynylselenocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:42680|MetaCyc:RXN-15803 jl 2014-12-15T11:56:12Z molecular_function owl:Class GO:0031695 biolink:NamedThing alpha-2B adrenergic receptor binding Binding to an alpha-2B adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-2B adrenergic receptor ligand molecular_function owl:Class GO:0044227 biolink:NamedThing methane-oxidizing organelle A cytoplasmic, membrane-bounded compartment found within Methanotrophic bacteria that contains enzymes and electron transfer proteins for methane catabolism. This structure is analogous to the thylakoid of Cyanobacteria and the anammoxosome of anaerobic ammonium oxidation organisms. tmpzr1t_l9r_go_relaxed.owl methanotroph intracytoplasmic membrane-bound compartment|methane-oxidizing compartment jl 2009-11-17T02:13:52Z cellular_component owl:Class GO:0071228 biolink:NamedThing cellular response to tumor cell Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a tumor cell. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-03T02:04:43Z biological_process owl:Class GO:0102515 biolink:NamedThing pelargonidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + 1-O-feruloyl-beta-D-glucose <=> pelargonidin 3,7-di-O-beta-D-glucoside + ferulate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14447 molecular_function owl:Class GO:0047443 biolink:NamedThing 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity Catalysis of the reaction: 4-hydroxy-4-methyl-2-oxoglutarate = 2 pyruvate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxy-4-methyl-2-oxoglutarate pyruvate-lyase (pyruvate-forming)|4-hydroxy-4-methyl-2-ketoglutarate aldolase activity|pyruvate aldolase activity|gamma-methyl-gamma-hydroxy-alpha-ketoglutaric aldolase activity|4-hydroxy-4-methyl-2-oxoglutarate pyruvate-lyase activity MetaCyc:4.1.3.17-RXN|EC:4.1.3.17|RHEA:22748 molecular_function owl:Class GO:0010597 biolink:NamedThing green leaf volatile biosynthetic process The chemical reactions and pathways resulting in the formation of volatile molecules emitted from green plants, such as hexenal, hexenol and hexenyl acetate, from linoleic acid or linolenic acid. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030059 biolink:NamedThing aralkylamine dehydrogenase (azurin) activity Catalysis of the reaction: an aralkylamine + H2O + 2 oxidized [azurin] = an aromatic aldehyde + 2 H+ + NH4+ + 2 reduced [azurin]. tmpzr1t_l9r_go_relaxed.owl aralkylamine:(azurin) oxidoreductase (deaminating) activity|aromatic amine dehydrogenase (azurin) activity RHEA:47796|EC:1.4.9.2|MetaCyc:ARALKYLAMINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0050681 biolink:NamedThing androgen receptor binding Binding to an androgen receptor. tmpzr1t_l9r_go_relaxed.owl AR binding molecular_function owl:Class GO:0102442 biolink:NamedThing syringetin 3-O-methyltransferase activity Catalysis of the reaction: syringetin(1-) + S-adenosyl-L-methionine <=> 3,3',5'-trimethylmyricetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13920 molecular_function owl:Class GO:0030348 biolink:NamedThing syntaxin-3 binding Binding to a syntaxin-3 SNAP receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019905 biolink:NamedThing syntaxin binding Binding to a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse. tmpzr1t_l9r_go_relaxed.owl syntaxin-5 binding|syntaxin-6 binding|syntaxin-2 binding|syntaxin-13 binding GO:0050430|GO:0030347|GO:0051535|GO:0030349 molecular_function owl:Class GO:2001072 biolink:NamedThing galactomannan binding Binding to galactomannan. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T12:12:02Z molecular_function owl:Class GO:0102295 biolink:NamedThing 4-methylumbelliferyl glucoside 6'-O-malonyltransferase activity Catalysis of the reaction: 4-methylumbelliferyl glucoside + malonyl-CoA <=> 4-methylumbelliferone 6'-O-malonylglucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12699 molecular_function owl:Class GO:0008774 biolink:NamedThing acetaldehyde dehydrogenase (acetylating) activity Catalysis of the reaction: acetaldehyde + CoA + NAD+ = acetyl-CoA + NADH + H+. tmpzr1t_l9r_go_relaxed.owl ADA|DmpF|aldehyde dehydrogenase (acylating) activity|acylating acetaldehyde dehydrogenase activity|acetaldehyde:NAD+ oxidoreductase (CoA-acetylating) RHEA:23288|MetaCyc:ACETALD-DEHYDROG-RXN|EC:1.2.1.10 molecular_function owl:Class GO:0055056 biolink:NamedThing D-glucose transmembrane transporter activity Enables the transfer of the D-enantiomer of the hexose monosaccharide glucose from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5339524|Reactome:R-HSA-8981553|Reactome:R-HSA-429094|Reactome:R-HSA-450095|Reactome:R-HSA-8981564|Reactome:R-HSA-5632804|Reactome:R-HSA-8981570|Reactome:R-HSA-8981574|Reactome:R-HSA-5632871 molecular_function owl:Class GO:0009519 biolink:NamedThing middle lamella Layer of intercellular material, chiefly pectic substances, cementing together the primary walls of contiguous cells. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Middle_lamella cellular_component owl:Class GO:1990514 biolink:NamedThing 5' transitive RNA interference An RNA interference where the silencing signal spreads 5' along the target mRNA, outside of the initial target sequence. Typically involves the formation of secondary siRNAs formed when the initial mRNA target sequence functions as a template for 5' to 3' synthesis of new dsRNA. tmpzr1t_l9r_go_relaxed.owl jl 2014-10-09T15:29:31Z biological_process owl:Class GO:0106099 biolink:NamedThing 2-keto-3-deoxy-L-rhamnonate aldolase activity Catalysis of the reaction 2-dehydro-3-deoxy-L-rhamnonate = pyruvate + (S)-lactaldehyde. tmpzr1t_l9r_go_relaxed.owl EC:4.1.2.53|RHEA:25784 hjd 2018-02-15T16:12:17Z molecular_function owl:Class GO:0102088 biolink:NamedThing N-(4-hydroxybenzoyl)-L-glutamate synthetase activity Catalysis of the reaction: 4-hydroxybenzoic acid + L-glutamate + ATP <=> H+ + N-(4-hydroxybenzoyl)-L-glutamate + AMP + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10887 molecular_function owl:Class GO:0003711 biolink:NamedThing transcription elongation regulator activity A molecular function that regulates transcriptional elongation by enabling the transition from transcription initiation to elongation or by altering the elongation properties of the enzyme during the elongation phase of transcription. tmpzr1t_l9r_go_relaxed.owl transcriptional elongation regulator activity|transcription elongation factor activity https://github.com/geneontology/go-ontology/issues/14398 Restored term from obsolete. molecular_function owl:Class GO:0052668 biolink:NamedThing CTP:farnesol kinase activity Catalysis of the reaction: 2-trans,-6-trans-farnesol + CTP = 2-trans,-6-trans-farnesyl monophosphate + CDP + H+. tmpzr1t_l9r_go_relaxed.owl farnesol kinase activity|CTP:2-trans,-6-trans-farnesol phosphotransferase activity|trans,trans-farnesol kinase activity|CTP:2-trans,-6-trans-farnesol kinase activity|farnesol phosphotransferase activity https://github.com/geneontology/go-ontology/issues/21619 RHEA:51680|MetaCyc:RXN-11625|EC:2.7.1.216 ai 2011-04-11T01:19:25Z GO:0052669 molecular_function owl:Class GO:0050630 biolink:NamedThing (iso)eugenol O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + isoeugenol = S-adenosyl-L-homocysteine + isomethyleugenol. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:isoeugenol O-methyltransferase activity|isoeugenol O-methyltransferase activity RHEA:17081|EC:2.1.1.146|MetaCyc:2.1.1.146-RXN molecular_function owl:Class GO:0002774 biolink:NamedThing Fc receptor mediated inhibitory signaling pathway A series of molecular signals generated as a consequence of the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of inhibiting an immune effector process contributing to an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region. tmpzr1t_l9r_go_relaxed.owl Fc receptor mediated inhibitory signalling pathway|Fc-receptor mediated inhibitory signaling pathway biological_process owl:Class GO:0030845 biolink:NamedThing phospholipase C-inhibiting G protein-coupled receptor signaling pathway A G protein-coupled receptor signaling pathway which proceeds with inhibition of phospholipase C (PLC) activity and a subsequent decrease in the levels of cellular inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl G-protein-coupled inhibitory pathway of phospholipase C|GPCR signaling pathway via inhibition of PLC|phospholipase C inhibition|inhibition of phospholipase C activity involved in G-protein coupled receptor signalling pathway|phospholipase C-inhibiting G-protein coupled receptor signaling pathway|GPCR signaling pathway coupled to inhibition of phospholipase C activity|PLC-inhibiting GPCR signaling pathway This term is intended to cover steps in a GPCR signaling pathway both upstream and downstream of phospholipase C (PLC) inhibition. biological_process owl:Class GO:0102520 biolink:NamedThing L-threonine O-3-phosphate phosphatase activity Catalysis of the reaction: O-phospho-L-threonine + H2O = L-threonine + hydrogenphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14505 molecular_function owl:Class GO:0070991 biolink:NamedThing medium-chain-acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a medium-chain fatty acid residue. A medium chain fatty acid is any fatty acid with a chain length of between C6 and C12. tmpzr1t_l9r_go_relaxed.owl MCAD activity EC:1.3.99.- mah 2009-10-29T04:11:49Z molecular_function owl:Class GO:0102468 biolink:NamedThing wogonin 7-O-glucuronosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucuronate + wogonin <=> UDP + wogonin 7-O-beta-D-glucuronate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14060|EC:2.4.1.253|RHEA:28322 molecular_function owl:Class GO:0062204 biolink:NamedThing (13S)-vitexifolin A synthase activity Catalysis of the reaction:9alpha-copalyl diphosphate + H2O = (13S)-vitexifolin A + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:40027 dph 2020-01-03T13:24:50Z molecular_function owl:Class GO:0102525 biolink:NamedThing 2-oxoglutarate, L-arginine oxygenase (succinate-forming) activity Catalysis of the reaction: L-argininium(1+) + 2-oxoglutarate + O2 = (3S)-3-hydroxy-L-arginine(1+) + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14542|EC:1.14.11.41|RHEA:36607 molecular_function owl:Class GO:0008733 biolink:NamedThing L-arabinose isomerase activity Catalysis of the reaction: L-arabinose = L-ribulose. tmpzr1t_l9r_go_relaxed.owl L-arabinose ketol-isomerase activity|L-arabinose aldose-ketose-isomerase activity RHEA:14821|KEGG_REACTION:R01761|MetaCyc:ARABISOM-RXN|EC:5.3.1.4 molecular_function owl:Class GO:0102616 biolink:NamedThing oryzalexin A synthase activity Catalysis of the reaction: oryzalexin D + NAD(P) <=> oryzalexin A + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15464 molecular_function owl:Class GO:0047480 biolink:NamedThing UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine + ATP + D-alanyl-D-alanine = phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + ADP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine synthetase activity|UDP-MurNAc-pentapeptide synthetase activity|UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine:D-alanyl-D-alanine ligase (ADP-forming)|UDPacetylmuramoylpentapeptide synthetase activity|UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase activity|UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase activity|MurF synthetase activity|UDP-N-acetylmuramoylalanyl-D-glutamyl-lysine-D-alanyl-D-alanine ligase activity|uridine diphosphoacetylmuramoylpentapeptide synthetase activity|UDP-MurNAc-L-Ala-D-Glu-L-Lys:D-Ala-D-Ala ligase activity|UDP-N-acetylmuramoylalanyl-tripeptide-D-alanyl-D-alanine ligase activity|UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase activity|UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase activity MetaCyc:6.3.2.10-RXN|RHEA:16085|EC:6.3.2.10 Note that the enzyme UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase also has UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766). molecular_function owl:Class GO:0051922 biolink:NamedThing cholesterol sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + cholesterol = adenosine 3',5'-bisphosphate + cholesterol sulfate. tmpzr1t_l9r_go_relaxed.owl EC:2.8.2.- molecular_function owl:Class GO:0044186 biolink:NamedThing host cell lipid droplet Any particle of coalesced lipids in the cytoplasm of a host cell. May include associated proteins. tmpzr1t_l9r_go_relaxed.owl host cell lipid body|host cell lipid particle|host cell lipid adiposome jl 2009-10-15T03:05:06Z cellular_component owl:Class GO:0043423 biolink:NamedThing 3-phosphoinositide-dependent protein kinase binding Binding to a 3-phosphoinositide-dependent protein kinase. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol-3-phosphate-dependent protein kinase binding molecular_function owl:Class GO:1903576 biolink:NamedThing response to L-arginine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-arginine stimulus. tmpzr1t_l9r_go_relaxed.owl mr 2014-10-29T22:18:39Z biological_process owl:Class GO:0071132 biolink:NamedThing alphaX-beta2 integrin-ICAM-4 complex A protein complex that consists of an alphaX-beta2 integrin complex bound to intercellular adhesion molecule 4. tmpzr1t_l9r_go_relaxed.owl ITGAX-ITGB2-ICAM4 complex mah 2009-11-13T02:28:30Z cellular_component owl:Class GO:0034046 biolink:NamedThing poly(G) binding Binding to a sequence of guanine residues in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl poly(G) binding, within an RNA molecule|poly(rG) binding molecular_function owl:Class GO:0050053 biolink:NamedThing levansucrase activity Catalysis of the reaction: sucrose + 2,6-beta-D-fructosyl(n) = glucose + 2,6-beta-D-fructosyl(n+1). tmpzr1t_l9r_go_relaxed.owl sucrose:2,6-beta-D-fructan 6-beta-D-fructosyltransferase activity|sucrose 6-fructosyltransferase activity|beta-2,6-fructan:D-glucose 1-fructosyltransferase activity|sucrose 6-fructosyl transferase activity|beta-2,6-fructosyltransferase activity EC:2.4.1.10|RHEA:13653|MetaCyc:LEVANSUCRASE-RXN molecular_function owl:Class GO:0034688 biolink:NamedThing integrin alphaM-beta2 complex An integrin complex that comprises one alphaM subunit and one beta2 subunit. tmpzr1t_l9r_go_relaxed.owl alphaM-beta2 integrin complex|Itgam-Itgb2 complex cellular_component owl:Class GO:0102476 biolink:NamedThing pinocembrin 2-hydroxylase activity Catalysis of the reaction: pinocembrin + NADPH + O2 + H+ <=> 2,5,7-trihydroxyflavanone + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:57592|MetaCyc:RXN-14083 molecular_function owl:Class GO:0102527 biolink:NamedThing 8-demethylnovobiocate synthase activity Catalysis of the reaction: 3-amino-4,7-dihydroxycoumarin + 3-dimethylallyl-4-hydroxybenzoate + ATP(4-) <=> H+ + 8-desmethylnovobiocic acid(1-) + AMP(2-) + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:6.3.1.15|MetaCyc:RXN-14547|RHEA:36699 molecular_function owl:Class GO:1904090 biolink:NamedThing peptidase inhibitor complex A protein complex which is capable of peptidase inhibitor activity. tmpzr1t_l9r_go_relaxed.owl Cathepsin-B - cystatin-A complex An example of this is Cystatin-A in human (UniProt symbol P01040) in PMID:20860624 (inferred from physical interaction). bhm 2015-03-26T10:16:27Z cellular_component owl:Class GO:0047769 biolink:NamedThing arogenate dehydratase activity Catalysis of the reaction: L-arogenate = L-phenylalanine + H2O + CO2. tmpzr1t_l9r_go_relaxed.owl L-arogenate hydro-lyase (decarboxylating)|L-arogenate hydro-lyase (decarboxylating; L-phenylalanine-forming)|carboxycyclohexadienyl dehydratase activity MetaCyc:CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN|RHEA:12536|EC:4.2.1.91 molecular_function owl:Class GO:0047774 biolink:NamedThing cis-2-enoyl-CoA reductase (NADPH) activity Catalysis of the reaction: acyl-CoA + NADP+ = cis-2,3-dehydroacyl-CoA + NADPH. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:NADP+ cis-2-oxidoreductase activity|reductase, cis-2-enoyl coenzyme A|NADPH-dependent cis-enoyl-CoA reductase activity|cis-2-enoyl-coenzyme A reductase activity MetaCyc:CIS-2-ENOYL-COA-REDUCTASE-NADPH-RXN|EC:1.3.1.37 molecular_function owl:Class GO:0098972 biolink:NamedThing anterograde dendritic transport of mitochondrion The directed movement of mitochondria along microtubules in dendrites towards the postsynapse and away from the cell body. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061595 biolink:NamedThing 6-deoxy-6-sulfofructose-1-phosphate aldolase activity Catalysis of the reaction 6-deoxy-6-sulfofructose-1-phosphate = 3-sulfolactaldehyde + dihydroxyacetone phosphate. tmpzr1t_l9r_go_relaxed.owl dph 2014-02-10T10:05:27Z molecular_function owl:Class GO:0047953 biolink:NamedThing glycerol 2-dehydrogenase (NADP+) activity Catalysis of the reaction: glycerol + NADP(+) = glycerone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl dihydroxyacetone reductase (NADPH)|glycerol:NADP+ 2-oxidoreductase (glycerone-forming)|dihydroxyacetone (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|dihydroxyacetone reductase activity|DHA oxidoreductase activity MetaCyc:GLYCEROL-2-DEHYDROGENASE-NADP+-RXN|KEGG_REACTION:R01039|RHEA:12753|EC:1.1.1.156 molecular_function owl:Class GO:0018812 biolink:NamedThing 3-hydroxyacyl-CoA dehydratase activity Catalysis of the reaction: alkene-CoA + H2O = alcohol-CoA. Substrates are crotonoyl-CoA (producing 3-hydroxyacyl-CoA) and 2,3-didehydro-pimeloyl-CoA (producing 3-hydroxypimeloyl-CoA). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8957389 molecular_function owl:Class GO:0001019 biolink:NamedThing plastid promoter transcription regulatory region sequence-specific DNA binding Binding to a DNA region that controls transcription by a plastid RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. tmpzr1t_l9r_go_relaxed.owl plastid promoter regulatory region sequence-specific DNA binding krc 2010-08-19T09:46:27Z molecular_function owl:Class GO:0031748 biolink:NamedThing D1 dopamine receptor binding Binding to a D1 dopamine receptor. tmpzr1t_l9r_go_relaxed.owl D1 dopamine receptor ligand|D1A dopamine receptor binding molecular_function owl:Class GO:0047561 biolink:NamedThing 3-hydroxyanthranilate oxidase activity Catalysis of the reaction: 3-hydroxyanthranilate + O(2) = 6-imino-5-oxocyclohexa-1,3-dienecarboxylate + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl 3-hydroxyanthranilic acid oxidase activity|3-hydroxyanthranilate:oxygen oxidoreductase activity EC:1.10.3.5|KEGG_REACTION:R02666|RHEA:17245|MetaCyc:3-HYDROXYANTHRANILATE-OXIDASE-RXN molecular_function owl:Class GO:0018815 biolink:NamedThing 3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon hydratase-aldolase activity Catalysis of the reaction: 3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon + H2O = 2-oxobut-3-enanoate + 2,5,6-trihydroxy-3-methylpyridine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-645|UM-BBD_reactionID:r0051 molecular_function owl:Class GO:0032581 biolink:NamedThing ER-dependent peroxisome organization A process of peroxisome organization in which assembly or arrangement of constituent parts takes place in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum-dependent peroxisome organization|ER-dependent peroxisome biogenesis|ER-dependent peroxisome organisation biological_process owl:Class GO:0102408 biolink:NamedThing sn-2-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity Catalysis of the reaction: hexadecanedioyl-CoA + sn-glycerol 3-phosphate <=> coenzyme A + sn-2-C16:0-DCA-LPA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13735 molecular_function owl:Class GO:0047655 biolink:NamedThing allyl-alcohol dehydrogenase activity Catalysis of the reaction: allyl alcohol + NADP(+) = acrolein + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl allyl-alcohol:NADP+ oxidoreductase activity EC:1.1.1.54|RHEA:12168|MetaCyc:ALLYL-ALCOHOL-DEHYDROGENASE-RXN|KEGG_REACTION:R03572 molecular_function owl:Class GO:0033761 biolink:NamedThing mugineic-acid 3-dioxygenase activity Catalysis of the reactions: mugineic acid + 2-oxoglutarate + O2 = 3-epihydroxymugineic acid + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl mugineic acid,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity|IDS2 RHEA:14509|EC:1.14.11.25|KEGG_REACTION:R07186|MetaCyc:RXN-7982 molecular_function owl:Class GO:0033803 biolink:NamedThing kaempferol 4'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + kaempferol = S-adenosyl-L-homocysteine + H(+) + kaempferide. tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:kaempferol 4'-O-methyltransferase activity|S-adenosyl-L-methionine:flavonoid 4'-O-methyltransferase activity|F 4'-OMT KEGG_REACTION:R06807|EC:2.1.1.155|MetaCyc:2.1.1.155-RXN|RHEA:15105 molecular_function owl:Class GO:0043800 biolink:NamedThing hexulose-6-phosphate isomerase activity Catalysis of the reaction: D-arabino-3-hexulose 6-phosphate = D-fructose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl HUMPI RHEA:25900|EC:5.3.1.27|MetaCyc:R12-RXN molecular_function owl:Class GO:0045903 biolink:NamedThing positive regulation of translational fidelity Any process that increases the ability of the translational apparatus to interpret the genetic code. tmpzr1t_l9r_go_relaxed.owl stimulation of translational fidelity|activation of translational fidelity|up regulation of translational fidelity|up-regulation of translational fidelity|upregulation of translational fidelity biological_process owl:Class GO:0004452 biolink:NamedThing isopentenyl-diphosphate delta-isomerase activity Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate. tmpzr1t_l9r_go_relaxed.owl isopentenylpyrophosphate isomerase activity|methylbutenylpyrophosphate isomerase activity|IPP isomerase activity|isopentenyl-diphosphate D-isomerase activity|isopentenylpyrophosphate delta-isomerase activity|isopentenyl-diphosphate delta3-delta2-isomerase activity KEGG_REACTION:R01123|MetaCyc:IPPISOM-RXN|EC:5.3.3.2|RHEA:23284|Reactome:R-HSA-191382 molecular_function owl:Class GO:0050090 biolink:NamedThing mannuronate reductase activity Catalysis of the reaction: D-mannonate + NAD(P)+ = D-mannuronate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl mannonate dehydrogenase (NAD(P)+)|mannonate dehydrogenase activity|D-mannonate:nicotinamide adenine dinucleotide (phosphate oxidoreductase (D-mannuronate-forming))|D-mannonate:NAD(P)+ 6-oxidoreductase activity|mannonate (nicotinamide adenine dinucleotide (phosphate))dehydrogenase activity EC:1.1.1.131|MetaCyc:MANNURONATE-REDUCTASE-RXN molecular_function owl:Class GO:0016464 biolink:NamedThing chloroplast protein-transporting ATPase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate; drives the transport of proteins into the chloroplast stroma. tmpzr1t_l9r_go_relaxed.owl ATPase-coupled chloroplast protein transporter activity|AAA chloroplast protein-transporting ATPase MetaCyc:3.6.3.52-RXN|EC:7.4.2.4 molecular_function owl:Class GO:1990216 biolink:NamedThing positive regulation by symbiont of host transcription Any process in which an organism activates, maintains or increases the frequency, rate or extent of transcription in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-10T15:45:17Z biological_process owl:Class GO:0043325 biolink:NamedThing phosphatidylinositol-3,4-bisphosphate binding Binding to phosphatidylinositol-3,4-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 4' positions. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102767 biolink:NamedThing flavanone 4'-O-methyltransferase activity Catalysis of the reaction: (S)-naringenin + S-adenosyl-L-methionine = 2 H+ + ponciretin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:31743|MetaCyc:RXN-7777|EC:2.1.1.231 molecular_function owl:Class GO:0070410 biolink:NamedThing co-SMAD binding Binding to a common mediator SMAD signaling protein. tmpzr1t_l9r_go_relaxed.owl common-partner SMAD binding|common mediator SMAD binding|common partner SMAD binding|common-mediator SMAD binding molecular_function owl:Class GO:0075000 biolink:NamedThing response to host osmotic environment Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the osmotic conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response of symbiont to host osmotic environment biological_process owl:Class GO:0050781 biolink:NamedThing ortho-trichlorophenol reductive dehalogenase activity Catalysis of the reaction: 2,4,6-trichlorophenol + 2 H+ + 2 e- = 2,4-dichlorophenol + HCl. tmpzr1t_l9r_go_relaxed.owl 2,4,6-trichlorophenol reductive dehalogenase activity|2,4,6-TCP reductive dehalogenase activity molecular_function owl:Class GO:1990420 biolink:NamedThing establishment of septation initiation network asymmetry The septation initiation signaling process by which the activity of the septation initiation network (SIN) is activated asymmetrically on the spindle pole bodies. tmpzr1t_l9r_go_relaxed.owl establishment of SIN asymmetry al 2014-07-16T13:51:36Z biological_process owl:Class GO:0102806 biolink:NamedThing 4-coumaroyl-CoA:cyanidin-3,5-diglucoside-6''-O-acyltransferase activity Catalysis of the reaction: 4-coumaryl-CoA + cyanin betaine <=> shisonin + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8170 molecular_function owl:Class GO:0047717 biolink:NamedThing imidazoleacetate 4-monooxygenase activity Catalysis of the reaction: H(+) + imidazol-4-ylacetate + NADH + O(2) = 5-hydroxyimidazole-4-acetate + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl 4-imidazoleacetate,NADH:oxygen oxidoreductase (5-hydroxylating)|imidazoleacetic hydroxylase activity|imidazoleacetic monooxygenase activity|imidazoleacetate hydroxylase activity RHEA:19425|EC:1.14.13.5|MetaCyc:IMIDAZOLEACETATE-4-MONOOXYGENASE-RXN|KEGG_REACTION:R04066 molecular_function owl:Class GO:0047532 biolink:NamedThing 2,5-dioxopiperazine hydrolase activity Catalysis of the reaction: 2,5-dioxopiperazine + H(2)O = glycylglycine. tmpzr1t_l9r_go_relaxed.owl cyclo(glycylglycine) hydrolase activity|cyclo(Gly-Gly) hydrolase activity|2,5-dioxopiperazine amidohydrolase activity RHEA:21808|EC:3.5.2.13|MetaCyc:25-DIOXOPIPERAZINE-HYDROLASE-RXN|KEGG_REACTION:R03810 molecular_function owl:Class GO:0003786 biolink:NamedThing actin lateral binding Binding to an actin filament along its length. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990620 biolink:NamedThing ANPR-A receptor complex A receptor complex composed of two ANPR-A molecules and expressed in the heart atrium in mammals; it plays a major role in the regulation of blood pressure and salt-fluid volume homeostasis. Binding of the ligand AMP in response to atrial distension (high blood volume) leads to guanylate cyclase activity of the ANPR-A receptor complex, thereby elevating intracellular cGMP levels. The end result is a reduction in blood volume and, therefore, a reduction in cardiac output and systemic blood pressure. tmpzr1t_l9r_go_relaxed.owl NPR1 receptor complex An example of this is Npr1 in rat (UniProt symbol P18910) in PMID:15117952 (inferred from direct assay). ame 2015-01-28T16:03:22Z cellular_component owl:Class GO:0052920 biolink:NamedThing (2R)-2-hydroxy-2-methylbutanenitrile lyase activity Catalysis of the reaction: (2R)-2-hydroxy-2-methylbutanenitrile = butan-2-one + hydrogen cyanide. tmpzr1t_l9r_go_relaxed.owl EC:4.1.2.46|RHEA:28170|KEGG_REACTION:R09358|MetaCyc:RXN-11733 molecular_function owl:Class GO:1901744 biolink:NamedThing 2-deoxystreptamine biosynthetic process The chemical reactions and pathways resulting in the formation of 2-deoxystreptamine. tmpzr1t_l9r_go_relaxed.owl 2-deoxystreptamine synthesis|2-deoxystreptamine anabolism|2-deoxystreptamine formation|2-deoxystreptamine biosynthesis yaf 2013-01-14T10:02:06Z biological_process owl:Class GO:0008784 biolink:NamedThing alanine racemase activity Catalysis of the reaction: L-alanine = D-alanine. tmpzr1t_l9r_go_relaxed.owl L-alanine racemase activity KEGG_REACTION:R00401|EC:5.1.1.1|RHEA:20249|MetaCyc:ALARACECAT-RXN molecular_function owl:Class GO:0000492 biolink:NamedThing box C/D snoRNP assembly The aggregation, arrangement and bonding together of proteins and a box C/D snoRNA to form a box C/D small nucleolar ribonucleoprotein (snoRNP) complex. tmpzr1t_l9r_go_relaxed.owl box C/D small nucleolar ribonucleoprotein complex assembly biological_process owl:Class GO:1903292 biolink:NamedThing protein localization to Golgi membrane A process in which a protein is transported to, or maintained in, a location within a Golgi membrane. tmpzr1t_l9r_go_relaxed.owl protein localisation to Golgi membrane|protein localization in Golgi membrane|protein localisation in Golgi membrane mah 2014-08-12T14:22:31Z biological_process owl:Class GO:0010280 biolink:NamedThing UDP-L-rhamnose synthase activity Catalysis of the reaction: UDP-D-glucose + NADPH + H+ = UDP-L-rhamnose + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase-4-reductase activity MetaCyc:RXN-5482 molecular_function owl:Class GO:0018474 biolink:NamedThing 2-carboxybenzaldehyde dehydrogenase activity Catalysis of the reaction: 2-carboxybenzaldehyde + NAD+ + H2O = NADH + 2 H+ + phthalate. tmpzr1t_l9r_go_relaxed.owl EC:1.2.1.-|UM-BBD_reactionID:r0490 molecular_function owl:Class GO:0008465 biolink:NamedThing glycerate dehydrogenase activity Catalysis of the reaction: (R)-glycerate + NAD+ = hydroxypyruvate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl hydroxypyruvate dehydrogenase activity EC:1.1.1.29|MetaCyc:GLYCERATE-DEHYDROGENASE-RXN|RHEA:17905 molecular_function owl:Class GO:0043780 biolink:NamedThing cobalt-precorrin-5B C1-methyltransferase activity Catalysis of the reaction: cobalt-precorrin 5B + S-adenosylmethionine = S-adenosylhomocysteine + cobalt-precorrin 6A. tmpzr1t_l9r_go_relaxed.owl cobalt-precorrin 5B C1-methyltransferase activity RHEA:26285|MetaCyc:RXN-8764 molecular_function owl:Class GO:0102728 biolink:NamedThing campest-4-en-3-one,NADPH:steroid 5alpha-reductase activity Catalysis of the reaction: (5alpha)-campestan-3-one + NADP = H+ + campest-4-en-3-one + NADPH. tmpzr1t_l9r_go_relaxed.owl RHEA:54416|MetaCyc:RXN-711 molecular_function owl:Class GO:0140719 biolink:NamedThing constitutive heterochromatin assembly The assembly of constitutive heterochromatin, heterochromatin that is always in a conformation refactory to transcription. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22325 pg 2021-10-29T13:41:09Z biological_process owl:Class GO:0050182 biolink:NamedThing phosphate butyryltransferase activity Catalysis of the reaction: butanoyl-CoA + phosphate = butanoyl phosphate + CoA. tmpzr1t_l9r_go_relaxed.owl butanoyl-CoA:phosphate butanoyltransferase activity|phosphotransbutyrylase activity EC:2.3.1.19|MetaCyc:PHOSPHATE-BUTYRYLTRANSFERASE-RXN|KEGG_REACTION:R01174|RHEA:20892 molecular_function owl:Class GO:0098604 biolink:NamedThing adenosylselenohomocysteinase activity Catalysis of the reaction: Se-Adenosyl-L-selenohomocysteine + H2O => Adenosine + Selenohomocysteine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2408532 dos 2014-04-16T10:53:22Z molecular_function owl:Class GO:0034680 biolink:NamedThing integrin alpha10-beta1 complex An integrin complex that comprises one alpha10 subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl alpha10-beta1 integrin complex|ITGA10-ITGB1 complex cellular_component owl:Class GO:0047972 biolink:NamedThing guanidinopropionase activity Catalysis of the reaction: 3-guanidinopropanoate + H(2)O = beta-alanine + urea. tmpzr1t_l9r_go_relaxed.owl 3-guanidinopropanoate amidinopropionase activity|GPase activity|GPH KEGG_REACTION:R00913|RHEA:16029|EC:3.5.3.17|MetaCyc:GUANIDINOPROPIONASE-RXN molecular_function owl:Class GO:0050407 biolink:NamedThing [glycogen-synthase-D] phosphatase activity Catalysis of the reaction: [glycogen-synthase D] + H2O = [glycogen-synthase I] + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatase type 2oC|glycogen synthase phosphatase activity|uridine diphosphoglucose-glycogen glucosyltransferase phosphatase activity|UDP-glycogen glucosyltransferase phosphatase activity|UDP-glucose:glycogen 4-alpha-D-glucosyltransferase-D phosphohydrolase activity|glycogen glucosyltransferase phosphatase activity|UDPglucose:glycogen 4-alpha-D-glucosyltransferase-D phosphohydrolase activity|glycogen-synthase-D phosphatase activity|glycogen synthetase phosphatase activity|Mg2+ dependent glycogen synthase phosphatase activity|glycogen synthase D phosphatase activity|UDPglucose-glycogen glucosyltransferase phosphatase activity EC:3.1.3.42|MetaCyc:GLYCOGEN-SYNTHASE-D-PHOSPHATASE-RXN molecular_function owl:Class GO:0052861 biolink:NamedThing glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group Catalysis of the endohydrolysis of (1->3)-linkages in beta-D-glucans when the glucose residue whose reducing group is involved in the linkage to be hydrolysed is itself substituted at C-3. tmpzr1t_l9r_go_relaxed.owl 1,3-(1,3)-beta-D-glucan 3-glucanohydrolase activity|laminaranase activity|laminarinase activity MetaCyc:3.2.1.6-RXN|EC:3.2.1.6 ai 2011-12-06T04:49:36Z molecular_function owl:Class GO:1990664 biolink:NamedThing Nkx-2.5 complex A transcription factor complex formed by two or more subunits of Nkx-2.5. Nkx-2.5 is an evolutionary conserved transcription factor important for the specification and differentiation of cardiomyocytes during heart development. It is also required for spleen development. It binds DNA either as a monomer, or a homodimer, or a heterodimer complex to activate or inhibit expression of genes. tmpzr1t_l9r_go_relaxed.owl NKX2E homodimer complex|Nkx-2.5 homodimer complex|NKX2.5 complex|NKX.2-5 homodimer complex An example of this is Nkx-2.5 in human (UniProt symbol P52952) in PMID:22849347 (inferred from direct assay). ame 2015-02-27T12:22:06Z cellular_component owl:Class GO:0030084 biolink:NamedThing PSI associated light-harvesting complex I, LHCIb subcomplex A pigment protein complex that forms part of the photosystem I associated light-harvesting complex I; contains two proteins (usually about 20 kDa); has a fluorescence maximum of 730 nm. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034870 biolink:NamedThing pinacolone 5-monooxygenase activity Catalysis of the reaction: 2,2-dimethyl-3-pentanone + 1/2 O2 = 1-hydroxy-4,4-dimethylpentan-3-one. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r12979 molecular_function owl:Class GO:1904824 biolink:NamedThing anaphase-promoting complex assembly The aggregation, arrangement and bonding together of a set of components to form an anaphase-promoting complex. tmpzr1t_l9r_go_relaxed.owl cyclosome formation|anaphase promoting complex formation|cyclosome assembly|anaphase promoting complex assembly|APC assembly|anaphase-promoting complex formation mah 2015-11-23T12:28:59Z biological_process owl:Class GO:0018473 biolink:NamedThing cis-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity Catalysis of the reaction: cis-2-methyl-5-isopropylhexa-2,5-dienal + NAD+ + H2O = NADH + H+ + cis-2-methyl-5-isopropylhexa-2,5-dienoic acid. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0744 molecular_function owl:Class GO:0003075 biolink:NamedThing renal vasodilation of the peripheral vascular system involved in regulation of systemic arterial blood pressure The renal process that modulates the force with which blood travels through the circulatory system, by vasodilation of the peripheral vascular system. tmpzr1t_l9r_go_relaxed.owl renal regulation of systemic arterial blood pressure by vasodilation of the peripheral vascular system biological_process owl:Class GO:0051879 biolink:NamedThing Hsp90 protein binding Binding to Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size. tmpzr1t_l9r_go_relaxed.owl Hsp90 class protein binding|Hsp90 binding molecular_function owl:Class GO:0001968 biolink:NamedThing fibronectin binding Binding to a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0017124 biolink:NamedThing SH3 domain binding Binding to a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0015478 biolink:NamedThing oligosaccharide transporting porin activity Enables the transfer of oligosaccharide, sized less than 1000 Da, from one side of a membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl raffinose porin molecular_function owl:Class GO:0006682 biolink:NamedThing galactosylceramide biosynthetic process The chemical reactions and pathways resulting in the formation of galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group. tmpzr1t_l9r_go_relaxed.owl galactosylceramide biosynthesis|galactosylceramide anabolism|galactosylceramide formation|galactosylceramide synthesis biological_process owl:Class GO:0071124 biolink:NamedThing alpha1-beta1 integrin-tyrosine-protein phosphatase non-receptor type 2 complex A protein complex that consists of an alpha1-beta1 integrin complex bound to tyrosine-protein phosphatase non-receptor type 2. tmpzr1t_l9r_go_relaxed.owl ITGA1-ITGB1-PTPN2 complex mah 2009-11-13T02:22:51Z cellular_component owl:Class GO:0036201 biolink:NamedThing ent-isokaurene C2-hydroxylase activity Catalysis of the reaction: ent-isokaurene + O2 + NADPH + H+ = ent-2alpha-hydroxyisokaurene + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R09861|EC:1.14.14.76|RHEA:56336 bf 2012-04-20T02:21:33Z molecular_function owl:Class GO:0097177 biolink:NamedThing mitochondrial ribosome binding Binding to a mitochondrial ribosome. tmpzr1t_l9r_go_relaxed.owl pr 2011-10-11T03:03:03Z molecular_function owl:Class GO:0033898 biolink:NamedThing Bacillus subtilis ribonuclease activity Catalysis of the endonucleolytic cleavage to 2',3'-cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl ribonucleate nucleotido-2'-transferase (cyclizing) activity|proteus mirabilis RNase activity MetaCyc:3.1.27.2-RXN|EC:4.6.1.22 molecular_function owl:Class GO:0043734 biolink:NamedThing DNA-N1-methyladenine dioxygenase activity Catalysis of the oxidative demethylation of N1-methyladenine and N3-methylcytosine in DNA, with concomitant decarboxylation of 2-oxoglutarate and releases oxidized methyl group on N1-methyladenine and N3-methylcytosine as formaldehyde. tmpzr1t_l9r_go_relaxed.owl AlkB|alpha-ketoglutarate-dependent dioxygenase Reactome:R-HSA-112118|Reactome:R-HSA-112123 molecular_function owl:Class GO:1990486 biolink:NamedThing anaerobic fatty acid catabolic process The chemical reactions and pathways resulting in the breakdown of a fatty acid in the absence of oxygen. A fatty acid is any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. tmpzr1t_l9r_go_relaxed.owl anaerobic fatty acid degradation tt 2014-09-20T17:25:48Z biological_process owl:Class GO:0034896 biolink:NamedThing 3-formiminopyruvate hydrolase activity Catalysis of the reaction: 3-formiminopyruvate + H2O = 3-formylpyruvate + HN3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.99.-|UM-BBD_reactionID:r1400 molecular_function owl:Class GO:0047078 biolink:NamedThing 3-hydroxy-4-oxoquinoline 2,4-dioxygenase activity Catalysis of the reaction: O2 + 3-hydroxy-1H-quinolin-4-one = carbon monoxide + N-formylanthranilate. tmpzr1t_l9r_go_relaxed.owl 3-hydroxy-4-oxo-1,4-dihydroquinoline 2,4-dioxygenase activity|3-hydroxy-1H-quinolin-4-one 2,4-dioxygenase (CO-forming)|(1H)-3-hydroxy-4-oxoquinoline 2,4-dioxygenase activity|1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase activity|3-hydroxy-4(1H)-one, 2,4-dioxygenase activity|quinoline-3,4-diol 2,4-dioxygenase activity RHEA:17949|MetaCyc:1.13.11.47-RXN|EC:1.13.11.47 molecular_function owl:Class GO:0098037 biolink:NamedThing viral DNA genome packaging, 5' extended cos packaging The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 5' protruding ends. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-20T11:40:47Z biological_process owl:Class GO:0102105 biolink:NamedThing demethoxycurcumin synthase activity from feruloylacetyl-CoA Catalysis of the reaction: feruloylacetyl-CoA + 4-coumaryl-CoA + H2O = demethoxycurcumin + 2 coenzyme A + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11225|EC:2.3.1.219|RHEA:35139 molecular_function owl:Class GO:1905793 biolink:NamedThing protein localization to pericentriolar material A process in which a protein is transported to, or maintained in, a location within a pericentriolar material. tmpzr1t_l9r_go_relaxed.owl protein localisation in pericentriolar material|protein localisation to pericentriolar material|protein localization in pericentriolar material ha 2017-01-10T11:10:37Z biological_process owl:Class GO:0032133 biolink:NamedThing chromosome passenger complex A eukaryotically conserved protein complex that localizes to kinetochores in early mitosis, the spindle mid-zone in anaphase B and to the telophase midbody. It has been proposed that the passenger complex coordinates various events based on its location to different structures during the course of mitosis. Complex members include the BIR-domain-containing protein Survivin, Aurora kinase, INCENP and Borealin. tmpzr1t_l9r_go_relaxed.owl CPC|chromosomal passenger complex|CPC complex cellular_component owl:Class GO:0047811 biolink:NamedThing D-alanine gamma-glutamyltransferase activity Catalysis of the reaction: D-alanine + L-glutamine = gamma-L-glutamyl-D-alanine + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-glutamine:D-alanine gamma-glutamyltransferase activity|D-alanine g-glutamyltransferase activity MetaCyc:D-ALANINE-GAMMA-GLUTAMYLTRANSFERASE-RXN|RHEA:23556|KEGG_REACTION:R01149|EC:2.3.2.14 molecular_function owl:Class GO:0016985 biolink:NamedThing mannan endo-1,4-beta-mannosidase activity Catalysis of the random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans, glucomannans, and galactoglucomannans. tmpzr1t_l9r_go_relaxed.owl beta-mannanase activity|endo-beta-1,4-mannase activity|endo-1,4-beta-mannanase activity|endo-beta-mannanase activity|beta-mannanase B|1,4-beta-D-mannan mannanohydrolase activity|beta-1,4-mannan 4-mannanohydrolase activity|beta-D-mannanase activity|endo-1,4-mannanase activity EC:3.2.1.78|MetaCyc:3.2.1.78-RXN molecular_function owl:Class GO:0042084 biolink:NamedThing 5-methyltetrahydrofolate-dependent methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule; dependent on the presence of 5-methyltetrahydrofolate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018850 biolink:NamedThing chloromuconate cycloisomerase activity Catalysis of the reaction: 2-chloro-2,5-dihydro-5-oxofuran-2-acetate = 3-chloro-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl muconate cycloisomerase II activity|2-chloro-2,5-dihydro-5-oxofuran-2-acetate lyase (decyclizing) RHEA:11032|UM-BBD_enzymeID:e0065|EC:5.5.1.7 molecular_function owl:Class GO:1990218 biolink:NamedThing positive regulation by symbiont of abscisic acid levels in host Any process in which an organism activates, maintains or increases the frequency, rate or extent of the abscisic acid levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl ml 2013-10-10T15:54:10Z biological_process owl:Class GO:0047912 biolink:NamedThing galacturonokinase activity Catalysis of the reaction: alpha-D-galacturonate + ATP = 1-phospho-alpha-D-galacturonate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl galacturonokinase (phosphorylating) D-galacturonic acid kinase activity|ATP:D-galacturonate 1-phosphotransferase activity KEGG_REACTION:R01980|RHEA:12965|EC:2.7.1.44|MetaCyc:GALACTURONOKINASE-RXN molecular_function owl:Class GO:0004144 biolink:NamedThing diacylglycerol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. tmpzr1t_l9r_go_relaxed.owl palmitoyl-CoA-sn-1,2-diacylglycerol acyltransferase activity|diacylglycerol acyltransferase activity|acyl-CoA:1,2-diacylglycerol O-acyltransferase activity|diglyceride O-acyltransferase activity|1,2-diacylglycerol acyltransferase activity|diglyceride acyltransferase activity RHEA:10868|Reactome:R-HSA-8848580|MetaCyc:DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN|Reactome:R-HSA-1482889|Reactome:R-HSA-75900|EC:2.3.1.20|Reactome:R-HSA-549192 molecular_function owl:Class GO:0008928 biolink:NamedThing mannose-1-phosphate guanylyltransferase (GDP) activity Catalysis of the reaction: alpha-D-mannose 1-phosphate + GDP + H(+) = GDP-alpha-D-mannose + phosphate. tmpzr1t_l9r_go_relaxed.owl mannose 1-phosphate guanylyltransferase activity|guanosine diphosphate-mannose 1-phosphate guanylyltransferase activity|GDP-mannose phosphorylase activity|GDP-mannose 1-phosphate guanylyltransferase activity|GDP mannose phosphorylase activity|guanosine diphosphomannose phosphorylase activity|GDP:mannose-1-phosphate guanylyltransferase activity|mannose 1-phosphate (guanosine diphosphate) guanylyltransferase activity|GDP-mannose pyrophosphorylase activity|GDP:D-mannose-1-phosphate guanylyltransferase activity|GDP:alpha-D-mannose-1-phosphate guanylyltransferase activity MetaCyc:MANNPGUANYLTRANGDP-RXN|RHEA:12905|KEGG_REACTION:R00883|EC:2.7.7.22 molecular_function owl:Class GO:0048922 biolink:NamedThing posterior lateral line neuromast deposition The process in which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in the developing posterior lateral line. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0010046 biolink:NamedThing response to mycotoxin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102004 biolink:NamedThing 2-octaprenyl-6-hydroxyphenol methylase activity Catalysis of the reaction: 3-(all-trans-octaprenyl)benzene-1,2-diol + S-adenosyl-L-methionine <=> H+ + 2-methoxy-6-(all-trans-octaprenyl)phenol + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2-OCTAPRENYL-6-OHPHENOL-METHY-RXN|RHEA:27770 molecular_function owl:Class GO:0052898 biolink:NamedThing N1-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity Catalysis of the reaction: H(2)O + N(1)-acetylspermidine + O(2) = 1,3-diaminopropane + 4-acetamidobutanal + H(2)O(2). tmpzr1t_l9r_go_relaxed.owl EC:1.5.3.15|RHEA:25864 molecular_function owl:Class GO:0034533 biolink:NamedThing 1,2-dihydroxy-7-hydroxymethylnaphthalene dioxygenase activity Catalysis of the reaction: 1,2-dihydroxy-7-hydroxymethylnaphthalene + O2 = 2-hydroxy-7-hydroxymethylchromene-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0764 molecular_function owl:Class GO:0021809 biolink:NamedThing neurotrophic factor signaling initiating cell movement, involved in cerebral cortex radial glia guided migration Signaling between members of the neurotrophin family and their receptors that result in the start of cell motility as a component of the process of cerebral cortex glial-mediated radial migration. tmpzr1t_l9r_go_relaxed.owl neurotrophic factor signalling initiating cell movement, involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0000455 biolink:NamedThing enzyme-directed rRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine during ribosome biogenesis where the enzyme specifies the site that becomes pseudouridylated without using a guide RNA. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990708 biolink:NamedThing conditioned place preference The associative learning process by which an animal learns and remembers an association between a neutral, unchanging environment and a putatively rewarding, internal state produced by a xenobiotic or drug. tmpzr1t_l9r_go_relaxed.owl sl 2015-03-18T20:28:59Z biological_process owl:Class GO:0080118 biolink:NamedThing brassinosteroid sulfotransferase activity Catalysis of the reaction: a brassinosteroid + 3'-phosphoadenosine-5'-phosphosulfate = sulfated brassinosteroid + adenosine-3',5'-diphosphate. This reaction is the transfer of a sulfate group to the hydroxyl group of a brassinosteroid acceptor, producing the sulfated brassinosteroid derivative. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-27T03:39:36Z molecular_function owl:Class GO:0034839 biolink:NamedThing menth-2-enone hydratase activity Catalysis of the reaction: (5R)-menth-2-enone + H2O = (5R)-3-hydroxymenthone. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1184 molecular_function owl:Class GO:0103056 biolink:NamedThing gibberellin A53, 2-oxoglutarate:oxygen oxidoreductase activity Catalysis of the reaction: gibberellin A53 + O2 + 2-oxoglutarate <=> gibberellin A44 diacid + carbon dioxide + succinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1F-167|RHEA:60800 molecular_function owl:Class GO:0070119 biolink:NamedThing ciliary neurotrophic factor binding Binding to the cytokine ciliary neurotrophic factor. tmpzr1t_l9r_go_relaxed.owl CNTF binding molecular_function owl:Class GO:0102197 biolink:NamedThing vinylacetate caboxylester hydrolase activity Catalysis of the reaction: but-3-enoate + H2O <=> allyl alcohol + formate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12087 molecular_function owl:Class GO:0018042 biolink:NamedThing C-terminal peptidyl-histidine amidation The formation of a C-terminal peptidyl-histidine amide by hydrolysis and oxidation of an interior His-Gly peptide in a secreted protein. tmpzr1t_l9r_go_relaxed.owl RESID:AA0089 biological_process owl:Class GO:0019352 biolink:NamedThing protoporphyrinogen IX biosynthetic process from glycine The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glycine. tmpzr1t_l9r_go_relaxed.owl protoporphyrinogen IX synthesis from glycine|protoporphyrinogen IX formation from glycine|protoporphyrinogen IX anabolism from glycine biological_process owl:Class GO:0102273 biolink:NamedThing homophytochelatin synthase (dimmer forming) activity Catalysis of the reaction: glutathionate + L-gamma-glutamyl-L-cysteinyl-beta-alaninate <=> gamma-Glu-Cys-gamma-Glu-Cys-beta-Ala + glycine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12529 molecular_function owl:Class GO:0004941 biolink:NamedThing beta2-adrenergic receptor activity Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta2-adrenergic receptors. tmpzr1t_l9r_go_relaxed.owl beta2 adrenoceptor molecular_function owl:Class GO:0036269 biolink:NamedThing swimming behavior The response to external or internal stimuli that results in the locomotory process of swimming. Swimming is the self-propelled movement of an organism through the water. tmpzr1t_l9r_go_relaxed.owl swimming behaviour bf 2012-07-04T10:14:49Z biological_process owl:Class GO:0018452 biolink:NamedThing 5-exo-hydroxycamphor dehydrogenase activity Catalysis of the reaction: 5-exo-hydroxycamphor + NAD+ = NADH + H+ + 2,5-diketocamphane. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0427|RHEA:32879|MetaCyc:R542-RXN|EC:1.1.1.327 molecular_function owl:Class GO:0031781 biolink:NamedThing type 3 melanocortin receptor binding Binding to a type 3 melanocortin receptor. tmpzr1t_l9r_go_relaxed.owl type 3 melanocortin receptor ligand molecular_function owl:Class GO:1904611 biolink:NamedThing cellular response to 3,3',4,4',5-pentachlorobiphenyl Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3,3',4,4',5-pentachlorobiphenyl stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to PCB 126 sl 2015-08-27T18:52:55Z biological_process owl:Class GO:0005111 biolink:NamedThing type 2 fibroblast growth factor receptor binding Binding to a type 2 fibroblast growth factor receptor (FGFR2). tmpzr1t_l9r_go_relaxed.owl heartless binding|FGFR2 ligand|heartless ligand|type 2 fibroblast growth factor receptor ligand|FGFR2 binding Note that heartless is the Drosophila gene encoding the type 2 fibroblast growth factor receptor (FGFR2). molecular_function owl:Class GO:1990409 biolink:NamedThing adrenomedullin binding Binding to adrenomedullin (AM). tmpzr1t_l9r_go_relaxed.owl AM binding An example of a protein that could be annotated to this term is CALCRL in human (Q16602) in PMID:10882736. bhm 2014-07-02T14:37:19Z molecular_function owl:Class GO:0031813 biolink:NamedThing P2Y2 nucleotide receptor binding Binding to a P2Y2 nucleotide receptor. tmpzr1t_l9r_go_relaxed.owl P2Y2 nucleotide receptor ligand molecular_function owl:Class GO:0101016 biolink:NamedThing FMN-binding domain binding Binding to the FMN-binding domain of a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0003064 biolink:NamedThing regulation of heart rate by hormone The process in which the hormones modulates the rate of heart muscle contraction. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action. tmpzr1t_l9r_go_relaxed.owl regulation of the rate of heart contraction by hormone|hormonal cardiac chronotropy biological_process owl:Class GO:0102246 biolink:NamedThing 6-amino-6-deoxyfutalosine hydrolase activity Catalysis of the reaction: aminodeoxyfutalosinate + H2O <=> dehypoxanthine futalosine + adenine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12346|RHEA:33079|EC:3.2.2.30 molecular_function owl:Class GO:0050395 biolink:NamedThing vitexin beta-glucosyltransferase activity Catalysis of the reaction: UDP-D-glucose + vitexin = H(+) + UDP + vitexin 2''-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDPglucose:vitexin 2''-O-beta-D-glucosyltransferase activity|UDP-glucose:vitexin 2''-O-beta-D-glucosyltransferase activity|vitexin b-glucosyltransferase activity|uridine diphosphoglucose-vitexin 2''-glucosyltransferase activity EC:2.4.1.105|RHEA:21956|KEGG_REACTION:R03565|MetaCyc:VITEXIN-BETA-GLUCOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0102656 biolink:NamedThing 1-18:2-2-trans-16:1-phosphatidylglycerol desaturase activity Catalysis of the reaction: 1-18:2-2-trans-16:1-phosphatidylglycerol + O2 + a reduced electron acceptor <=> 1-18:3-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-1727 molecular_function owl:Class GO:0019736 biolink:NamedThing peptidyl-sarcosine incorporation The incorporation of sarcosine (N-methylglycine) into non-coded peptides. tmpzr1t_l9r_go_relaxed.owl RESID:AA0063 biological_process owl:Class GO:0102098 biolink:NamedThing D-galacturonate reductase activity Catalysis of the reaction: L-galactonate + NADP = aldehydo-D-galacturonate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:26345|EC:1.1.1.365|MetaCyc:RXN-11151 molecular_function owl:Class GO:0050236 biolink:NamedThing pyridoxine:NADP 4-dehydrogenase activity Catalysis of the reaction: NADP(+) + pyridoxine = H(+) + NADPH + pyridoxal. tmpzr1t_l9r_go_relaxed.owl pyridoxin dehydrogenase activity|pyridoxol dehydrogenase activity|PL reductase activity|pyridoxal reductase activity|pyridoxine:NADP 4-oxidoreductase activity|pyridoxine dehydrogenase activity KEGG_REACTION:R01708|RHEA:16129|MetaCyc:PYRIDOXINE-4-DEHYDROGENASE-RXN|EC:1.1.1.65 molecular_function owl:Class GO:0021504 biolink:NamedThing neural fold hinge point formation The formation of the median and lateral hinge points in the neural folds. These are created by apical constriction and basal expansion of the underlying neural cells. The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube. tmpzr1t_l9r_go_relaxed.owl neural fold furrowing biological_process owl:Class GO:0018500 biolink:NamedThing trans-9R,10R-dihydrodiolphenanthrene dehydrogenase activity Catalysis of the reaction: trans-9R,10R-dihydrodiolphenanthrene + NAD+ = NADH + H+ + 9,10-dihydroxyphenanthrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0575 molecular_function owl:Class GO:0050059 biolink:NamedThing lombricine kinase activity Catalysis of the reaction: ATP + lombricine = ADP + N-phospholombricine. tmpzr1t_l9r_go_relaxed.owl ATP:lombricine N-phosphotransferase activity RHEA:23292|MetaCyc:LOMBRICINE-KINASE-RXN|EC:2.7.3.5 molecular_function owl:Class GO:0021811 biolink:NamedThing growth factor signaling initiating cell movement involved in cerebral cortex radial glia guided migration Signaling between growth factors and their receptors that results in the start of cell movement, where this process is involved in glial-mediated radial migration in the cerebral cortex. tmpzr1t_l9r_go_relaxed.owl growth factor signalling initiating cell movement involved in cerebral cortex glial-mediated radial migration|growth factor signaling initiating cell movement involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0050520 biolink:NamedThing phosphatidylcholine synthase activity Catalysis of the reaction: CDP-diacylglycerol + choline = 1,2-diacyl-sn-glycero-3-phosphocholine + CMP + H(+). tmpzr1t_l9r_go_relaxed.owl CDPdiglyceride-choline O-phosphatidyltransferase activity|CDP-diglyceride-choline O-phosphatidyltransferase activity|CDP-diacylglycerol:choline O-phosphatidyltransferase activity|PC synthase activity KEGG_REACTION:R05794|MetaCyc:2.7.8.24-RXN|EC:2.7.8.24|RHEA:14597 molecular_function owl:Class GO:0097674 biolink:NamedThing SCF-YLR352W ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is YLR352W in S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:30:54Z cellular_component owl:Class GO:0005728 biolink:NamedThing extrachromosomal rDNA circle Circular DNA molecules encoding ribosomal RNA that are replicated independently of chromosomal replication. These molecules originate in the chromosome but are excised and circularized, often by intramolecular homologous recombination between direct tandem repeats. tmpzr1t_l9r_go_relaxed.owl extrachromosomal ribosomal DNA circle cellular_component owl:Class GO:0022033 biolink:NamedThing telencephalon microglial cell migration The orderly movement of microglial cells through the telencephalon. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033954 biolink:NamedThing alpha-neoagaro-oligosaccharide hydrolase activity Catalysis of the hydrolysis of the 1,3-alpha-L-galactosidic linkages of neoagaro-oligosaccharides that are smaller than a hexamer, yielding 3,6-anhydro-L-galactose and D-galactose. tmpzr1t_l9r_go_relaxed.owl alpha-neoagarooligosaccharide hydrolase activity|alpha-NAOS hydrolase activity|alpha-neoagaro-oligosaccharide 3-glycohydrolase activity EC:3.2.1.159|MetaCyc:3.2.1.159-RXN molecular_function owl:Class GO:0071914 biolink:NamedThing prominosome An extracellular membrane-bounded vesicle that contains prominin proteins (in mouse Prom1/CD33 or Prom2) and are found in body fluids including ventricular fluid, saliva, urine and seminal fluid. In the ventricular fluid of the developing mouse brain two major classes of these particles have been observed (P2 particles of 500-1000 nm and P4 particles of 50-80 nm) which likely originate from microvilli, primary cilia and/or the midbody of neuroepithelial cells. The physiological role is not known. tmpzr1t_l9r_go_relaxed.owl prominin-containing extracellular membrane vesicle mah 2010-09-24T09:24:36Z cellular_component owl:Class GO:0036433 biolink:NamedThing di-trans, poly-cis-undecaprenol kinase activity Catalysis of the reaction: di-trans, octa-cis-undecaprenol + ATP = di-trans,octa-cis-undecaprenyl phosphate + ADP + H+. tmpzr1t_l9r_go_relaxed.owl ditrans,polycis-undecaprenol kinase activity KEGG_REACTION:R05626|MetaCyc:UNDECAPRENOL-KINASE-RXN|RHEA:28122 bf 2013-09-16T14:21:12Z molecular_function owl:Class GO:0047040 biolink:NamedThing pteridine reductase activity Catalysis of the reaction: 5,6,7,8-tetrahydrobiopterin + 2 NADP(+) = biopterin + 2 H(+) + 2 NADPH. tmpzr1t_l9r_go_relaxed.owl ptr1 activity|5,6,7,8-tetrahydrobiopterin:NADP+ oxidoreductase activity|PTR1|dihydrobiopterin reduction|pteridine reductase 1 activity EC:1.5.1.33|KEGG_REACTION:R01812|MetaCyc:1.1.1.253-RXN|RHEA:19509 Note that this function was formerly EC:1.1.1.253. molecular_function owl:Class GO:0004147 biolink:NamedThing dihydrolipoamide branched chain acyltransferase activity Catalysis of the reaction: acyl-CoA + dihydrolipoamide = CoA + S-acyldihydrolipoamide, where the acyl group is a branched chain. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide branched chain transacylase activity molecular_function owl:Class GO:1990147 biolink:NamedThing talin binding Binding to a talin, a family of related cytoskeletal proteins that play a role in assembly of actin filaments and migration of various cell types. tmpzr1t_l9r_go_relaxed.owl hjd 2013-07-25T19:49:53Z molecular_function owl:Class GO:0030751 biolink:NamedThing licodione 2'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine(1+) + licodione = 2'-O-methyllicodione + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl S-adenosyl-L-methionine:licodione 2'-O-methyltransferase activity EC:2.1.1.65|RHEA:18521|MetaCyc:LICODIONE-2-O-METHYLTRANSFERASE-RXN|KEGG_REACTION:R03623 molecular_function owl:Class GO:0102744 biolink:NamedThing all-trans-geranyl-geranyl diphosphate reductase activity Catalysis of the reaction: H+ + 2-trans,6-trans,10-trans-geranylgeranyl diphosphate + NADPH = dihydrogeranylgeranyl-PP + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7658 molecular_function owl:Class GO:0036145 biolink:NamedThing dendritic cell homeostasis The process of regulating the proliferation and elimination of dendritic cells such that the total number of dendritic cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. tmpzr1t_l9r_go_relaxed.owl DC homeostasis bf 2012-03-12T11:05:36Z biological_process owl:Class GO:0098818 biolink:NamedThing hyperpolarization of postsynaptic membrane A process that hyerpolarizes a postsynaptic membrane relative to its resting potential. This has an inhibitory effect on the post-synaptic cell, moving the membrane potential away from the firing threshold. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047741 biolink:NamedThing cetraxate benzylesterase activity Catalysis of the reaction: benzyl cetraxate + H(2)O = benzyl alcohol + cetraxate + H(+). tmpzr1t_l9r_go_relaxed.owl cetraxate-benzyl-ester benzylhydrolase activity EC:3.1.1.70|RHEA:23460|KEGG_REACTION:R03612|MetaCyc:CETRAXATE-BENZYLESTERASE-RXN molecular_function owl:Class GO:0016707 biolink:NamedThing gibberellin 3-beta-dioxygenase activity Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 3-beta-hydroxy-gibberellin + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl gibberellin 3-beta-hydroxylase activity|gibberellin 3beta-dioxygenase activity|(gibberrellin-20),2-oxoglutarate: oxygen oxidoreductase (3beta-hydroxylating)|gibberellin 3beta-hydroxylase activity|(gibberellin-20),2-oxoglutarate:oxygen oxidoreductase (3beta-hydroxylating) RHEA:10104|EC:1.14.11.15|MetaCyc:RXN1F-170 molecular_function owl:Class GO:0031095 biolink:NamedThing platelet dense tubular network membrane The lipid bilayer surrounding the platelet dense tubular network. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0097302 biolink:NamedThing lipoprotein biosynthetic process via diacylglyceryl transfer The chemical reactions and pathways by which diacylglyceryl transfer leads to formation of a water-soluble protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl lipoprotein biosynthesis (diacylglyceryl transfer) pr 2012-05-15T01:02:02Z biological_process owl:Class GO:0102445 biolink:NamedThing 3-methylquercetin 3'-O-methyltransferase activity Catalysis of the reaction: 3',4',5-trihydroxy-3-methoxyflavon-7-olate + S-adenosyl-L-methionine <=> 3,3'-dimethylquercetin + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13930 molecular_function owl:Class GO:0071859 biolink:NamedThing neuropeptide F receptor binding Binding to a neuropeptide F receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:23:56Z molecular_function owl:Class GO:0031736 biolink:NamedThing CCR11 chemokine receptor binding Binding to a CCR11 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR11 chemokine receptor ligand molecular_function owl:Class GO:0102723 biolink:NamedThing UDP-glucose:curcumin glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + curcumin = curcumin monoglucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7062 molecular_function owl:Class GO:0015615 biolink:NamedThing D-allose-importing ATPase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-allose(out) -> ADP + phosphate + D-allose(in). tmpzr1t_l9r_go_relaxed.owl D-allose porter activity molecular_function owl:Class GO:0047924 biolink:NamedThing geraniol dehydrogenase activity Catalysis of the reaction: geraniol + NADP+ = geranial + NADPH. tmpzr1t_l9r_go_relaxed.owl geraniol:NADP+ oxidoreductase activity EC:1.1.1.183|RHEA:14521|MetaCyc:GERANIOL-DEHYDROGENASE-RXN|UM-BBD_reactionID:r1163 molecular_function owl:Class GO:0140602 biolink:NamedThing nucleolar ring Ring-like structures located at the nucleolar periphery where several nuclear factors are reversibly aggregated and sequestered during acute heat stress. tmpzr1t_l9r_go_relaxed.owl NuRs https://github.com/geneontology/go-ontology/issues/20579 pg 2021-02-12T15:38:17Z cellular_component owl:Class GO:0034663 biolink:NamedThing endoplasmic reticulum chaperone complex A protein complex that is located in the endoplasmic reticulum and is composed of chaperone proteins, including BiP, GRP94; CaBP1, protein disulfide isomerase (PDI), ERdj3, cyclophilin B, ERp72, GRP170, UDP-glucosyltransferase, and SDF2-L1. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum network complex|ER chaperone complex|ER network complex cellular_component owl:Class GO:0003406 biolink:NamedThing retinal pigment epithelium development The progression of the retinal pigment epithelium over time, from its initial formation to the mature structure. The retinal pigment epithelium is the melanin-containing layer of cells between the retina and the choroid that absorbs scattered and reflected light and removes waste products produced by the photoreceptor cells. tmpzr1t_l9r_go_relaxed.owl RPE development dph 2009-12-21T02:04:27Z biological_process owl:Class GO:0097443 biolink:NamedThing sorting endosome A multivesicular body surrounded by and connected with multiple tubular compartments with associated vesicles. tmpzr1t_l9r_go_relaxed.owl MVB-tubule complex NIF_Subcellular:sao1028571114 pr 2012-12-06T14:04:14Z cellular_component owl:Class GO:0098666 biolink:NamedThing G protein-coupled serotonin receptor complex A protein complex that is capable of G protein-coupled serotonin receptor activity. tmpzr1t_l9r_go_relaxed.owl G-protein coupled serotonin receptor complex https://github.com/geneontology/go-ontology/issues/12942 dos 2016-12-21T12:28:12Z cellular_component owl:Class GO:0035440 biolink:NamedThing tuberculosinol biosynthetic process The chemical reactions and pathways resulting in the formation of tuberculosinol (halima-5,6,dien-15-ol), a secondary metabolite in Mycobacteria. tmpzr1t_l9r_go_relaxed.owl halima-5,6,dien-15-ol biosynthesis|tuberculosinol biosynthesis|halima-5,6,dien-15-ol biosynthetic process MetaCyc:PWY-5935 bf 2010-04-09T03:36:19Z biological_process owl:Class GO:0071987 biolink:NamedThing WD40-repeat domain binding Binding to a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain. tmpzr1t_l9r_go_relaxed.owl WD domain binding|beta-transducin repeat domain binding mah 2010-10-22T02:53:29Z molecular_function owl:Class GO:0071085 biolink:NamedThing alphaIIb-beta3 integrin-CD9 complex A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface protein CD9. tmpzr1t_l9r_go_relaxed.owl ITGA2b-ITGB3-CD9 complex mah 2009-11-06T04:44:52Z cellular_component owl:Class GO:0036054 biolink:NamedThing protein-malonyllysine demalonylase activity Catalysis of the reaction: protein-malonyllysine + H2O => protein-lysine + malonate. This reaction is the removal of a malonyl group (CO-CH2-CO) from a malonylated lysine residue of a protein or peptide. tmpzr1t_l9r_go_relaxed.owl protein malonyl lysine demalonylation activity|peptidyl-malonyllysine demalonylase activity|protein lysine demalonylation activity bf 2011-12-12T01:29:21Z molecular_function owl:Class GO:0102603 biolink:NamedThing 12-demethyl-elloramycin C12a O-methyltransferase activity Catalysis of the reaction: 12-demethyl-elloramycin + S-adenosyl-L-methionine <=> elloramycin + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15402 molecular_function owl:Class GO:0036149 biolink:NamedThing phosphatidylinositol acyl-chain remodeling Remodeling the acyl chains of phosphatidylinositol, through sequential deacylation and re-acylation reactions, to generate phosphatidylinositol containing different types of fatty acid acyl chains. tmpzr1t_l9r_go_relaxed.owl bf 2012-03-14T01:27:02Z biological_process owl:Class GO:0003106 biolink:NamedThing negative regulation of glomerular filtration by angiotensin The process in which angiotensin directly decreases the rate of glomerular filtration in the kidney. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule. tmpzr1t_l9r_go_relaxed.owl regulation of glomerular filtration by angiotensin|angiotensin-mediated regulation of glomerular filtration biological_process owl:Class GO:0008414 biolink:NamedThing CDP-alcohol phosphotransferase activity Catalysis of the transfer of a CDP-alcohol group from one compound to another. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050358 biolink:NamedThing tropinone reductase activity Catalysis of the reaction: NADP(+) + pseudotropine = H(+) + NADPH + tropinone. tmpzr1t_l9r_go_relaxed.owl tropinone (psi-tropine-forming) reductase activity|tropinone reductase II activity|pseudotropine forming tropinone reductase activity|pseudotropine:NADP+ 3-oxidoreductase activity MetaCyc:TROPINONE-REDUCTASE-RXN|EC:1.1.1.236|KEGG_REACTION:R06734|RHEA:24244 molecular_function owl:Class GO:0097263 biolink:NamedThing eoxin E4 synthase activity Catalysis of the reaction: eoxin D4 + H20 = eoxin E4 + glycine. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2161868 pr 2012-03-08T03:02:48Z molecular_function owl:Class GO:0050514 biolink:NamedThing homospermidine synthase (spermidine-specific) activity Catalysis of the reaction: spermidine + putrescine = sym-homospermidine + propane-1,3-diamine. tmpzr1t_l9r_go_relaxed.owl spermidine:putrescine 4-aminobutyltransferase (propane-1,3-diamine-forming) EC:2.5.1.45|RHEA:11236|MetaCyc:2.5.1.45-RXN molecular_function owl:Class GO:0044480 biolink:NamedThing envenomation resulting in positive regulation of mast cell degranulation in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of blood mast cell degranulation in the bitten organism. tmpzr1t_l9r_go_relaxed.owl jl 2012-01-19T02:54:37Z biological_process owl:Class GO:0047271 biolink:NamedThing glycosaminoglycan galactosyltransferase activity Catalysis of the reaction: glycosaminoglycan + UDP-galactose = D-galactosylglycosaminoglycan + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:glycosaminoglycan D-galactosyltransferase activity|UDPgalactose:glycosaminoglycan D-galactosyltransferase activity|uridine diphosphogalactose-mucopolysaccharide galactosyltransferase activity MetaCyc:2.4.1.74-RXN|EC:2.4.1.74 molecular_function owl:Class GO:0005169 biolink:NamedThing neurotrophin TRKB receptor binding Binding to a neurotrophin TRKB receptor. tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKB receptor ligand molecular_function owl:Class GO:0033818 biolink:NamedThing beta-ketoacyl-acyl-carrier-protein synthase III activity Catalysis of the reaction: acetyl-CoA + malonyl-[acyl-carrier protein] = acetoacyl-[acyl-carrier protein] + CoA + CO2. tmpzr1t_l9r_go_relaxed.owl 3-ketoacyl-acyl carrier protein synthase III activity|KAS III|beta-ketoacyl (acyl carrier protein) synthase III activity|KASIII|acetyl-CoA:malonyl-acyl-carrier-protein C-acyltransferase activity|FabH|beta-ketoacyl-acyl carrier protein synthase III activity|beta-ketoacyl-ACP synthase III activity|3-oxoacyl:ACP synthase III activity MetaCyc:2.3.1.180-RXN|EC:2.3.1.180|RHEA:12080 molecular_function owl:Class GO:0102167 biolink:NamedThing [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine O-N-acetyl-alpha-D-glucosaminase activity Catalysis of the reaction: H2O + an N-acetyl-alpha-D-glucosaminyl-L-serine-[glycoprotein] <=> N-acetyl-alpha-D-glucosaminide + a [protein]-L-serine. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.169|MetaCyc:RXN-11892|RHEA:48876 molecular_function owl:Class GO:0031504 biolink:NamedThing peptidoglycan-based cell wall organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the peptidoglycan-based cell wall. tmpzr1t_l9r_go_relaxed.owl peptidoglycan-based cell wall organization and biogenesis|peptidoglycan-based cell wall organisation biological_process owl:Class GO:0050030 biolink:NamedThing L-pipecolate dehydrogenase activity Catalysis of the reaction: L-pipecolate + acceptor = delta1-piperideine-6-carboxylate + reduced acceptor. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl L-pipecolate:(acceptor) 1,6-oxidoreductase activity|L-pipecolate:acceptor 1,6-oxidoreductase activity EC:1.5.99.3|MetaCyc:L-PIPECOLATE-DEHYDROGENASE-RXN|RHEA:19777 molecular_function owl:Class GO:0046979 biolink:NamedThing TAP2 binding Binding to the TAP2 subunit of TAP (transporter associated with antigen processing) protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047946 biolink:NamedThing glutamine N-acyltransferase activity Catalysis of the reaction: acyl-CoA + L-glutamine = CoA + N-acyl-L-glutamine. tmpzr1t_l9r_go_relaxed.owl acyl-CoA:L-glutamine N-acyltransferase activity EC:2.3.1.68|RHEA:18469|MetaCyc:GLUTAMINE-N-ACYLTRANSFERASE-RXN molecular_function owl:Class GO:0102462 biolink:NamedThing quercetin 3-sophoroside 7-O-rhamnosyltransferase activity Catalysis of the reaction: quercetin 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside + UDP-L-rhamnose <=> quercetin 3-O-rhamnosyl(1->2)glucoside-7-O-rhamnoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14011 molecular_function owl:Class GO:1990632 biolink:NamedThing branching involved in submandibular gland morphogenesis The process in which the branching structure of the submandibular gland is generated and organized. tmpzr1t_l9r_go_relaxed.owl submandibular gland ductal branching|submandibular gland branching morphogenesis cls 2015-02-10T14:40:01Z biological_process owl:Class GO:0044679 biolink:NamedThing methanophenazine reducing hydrogenase complex A protein complex which catalyzes the conversion of methanophenazine and hydrogen to form dihydromethanophenazine. This typically consists of three polypeptides. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-09T11:07:20Z cellular_component owl:Class GO:0102061 biolink:NamedThing endo-beta-bergamotene synthase activity Catalysis of the reaction: 2-cis,6-cis-farnesyl diphosphate <=> (+)-endo-beta-bergamotene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl (+)-endo-beta-bergamotene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing)|endo-beta-bergamontene synthase activity|(2Z,6Z)-farnesyl diphosphate <=> (+)-endo-beta-bergamotene RHEA:30467|MetaCyc:RXN-10483|EC:4.2.3.53 molecular_function owl:Class GO:0044208 biolink:NamedThing 'de novo' AMP biosynthetic process The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP). tmpzr1t_l9r_go_relaxed.owl jl 2009-10-22T02:48:30Z biological_process owl:Class GO:1990769 biolink:NamedThing proximal neuron projection The portion of an axon or dendrite that is close to the neuronal cell body. tmpzr1t_l9r_go_relaxed.owl sl 2015-06-10T20:30:40Z cellular_component owl:Class GO:0014830 biolink:NamedThing arteriole smooth muscle contraction A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the arteriole. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The arteriole is the smallest division of the artery located between the muscular arteries and the capillaries. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0110102 biolink:NamedThing ribulose bisphosphate carboxylase complex assembly The aggregation, arrangement and bonding together of a set of components to form a ribulose bisphosphate carboxylase complex. tmpzr1t_l9r_go_relaxed.owl RuBisCO assembly https://github.com/geneontology/go-ontology/issues/19828 kmv 2018-03-15T17:24:14Z biological_process owl:Class GO:0102552 biolink:NamedThing lipoyl synthase activity (acting on glycine-cleavage complex H protein Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14950|EC:2.8.1.8 molecular_function owl:Class GO:0045996 biolink:NamedThing negative regulation of transcription by pheromones Any process involving pheromones that stops, prevents or reduces the rate of transcription. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription by pheromones|down-regulation of transcription by pheromones|downregulation of transcription by pheromones|down regulation of transcription by pheromones biological_process owl:Class GO:0050503 biolink:NamedThing trehalose 6-phosphate phosphorylase activity Catalysis of the reaction: trehalose 6-phosphate + phosphate = glucose 6-phosphate + beta-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl trehalose 6-phosphate:phosphate beta-D-glucosyltransferase activity RHEA:20864|MetaCyc:2.4.1.216-RXN|EC:2.4.1.216 molecular_function owl:Class GO:0039545 biolink:NamedThing suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity Any process in which a virus stops, prevents, or reduces a viral-induced cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of host MAVS (mitochondrial antiviral signaling protein). MAVS is a signal transducer that lies downstream of the viral RNA receptors MDA-5 and RIG-I to coordinate host innate immune responses. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host MAVS activity|suppression by virus of host mitochondrial antiviral-signaling protein|inhibition of host MAVS by virus https://github.com/geneontology/go-ontology/issues/21983 This term is for annotation of viral proteins that counteract the host anti-viral innate immune response. bf 2012-01-19T02:37:20Z biological_process owl:Class GO:0036147 biolink:NamedThing rumination A digestive process in which food, usually grass or hay, is swallowed into a multi-compartmented stomach, regurgitated, chewed again, and swallowed again. tmpzr1t_l9r_go_relaxed.owl digestive rumination bf 2012-03-13T04:35:19Z biological_process owl:Class GO:0098036 biolink:NamedThing viral DNA genome packaging, 3' extended cos packaging The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 3' protruding ends. tmpzr1t_l9r_go_relaxed.owl bm 2012-07-20T11:38:40Z biological_process owl:Class GO:0090712 biolink:NamedThing basal pole of outer hair cell The end of the outer hair cell which receives and transmits neural signals. tmpzr1t_l9r_go_relaxed.owl tb 2016-11-01T12:57:03Z cellular_component owl:Class GO:0034814 biolink:NamedThing 7,8-dihydroxy benzo(a)pyrene dioxygenase activity Catalysis of the reaction: benzo(a)pyrene-cis-7,8-dihydrodiol + O2 = cis-4-(7-hydroxypyren-8-yl)-2-oxobut-3-enoate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1138 molecular_function owl:Class GO:1901500 biolink:NamedThing response to p-xylene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a p-xylene stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T15:23:54Z biological_process owl:Class GO:1901501 biolink:NamedThing response to xylene Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xylene stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T15:25:47Z biological_process owl:Class GO:0103001 biolink:NamedThing dimethylsulfoxide oxygenase activity Catalysis of the reaction: dimethyl sulfoxide + O2 + NADPH + H+ <=> sulfonyldimethane + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl RHEA:57956|MetaCyc:RXN-9767 molecular_function owl:Class GO:0097511 biolink:NamedThing dendritic cell dendrite A branched cellular projection (or cytoplasmic extension) that is extended from the surface of a dendritic immune cell, and which enables the cell to sample luminal pathogens and increase the surface area for antigen presentation to T cells. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T13:02:25Z cellular_component owl:Class GO:0061979 biolink:NamedThing femoral head articular cartilage development The process whose specific outcome is the progression of femoral head articular cartilage over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2018-02-12T20:06:21Z biological_process owl:Class GO:0030945 biolink:NamedThing protein tyrosine phosphatase activity, via thiol-phosphate intermediate The catalysis of phosphate removal from a phosphotyrosine using cysteine as a nucleophile and proceed by means of a thiol-phosphate intermediate. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102869 biolink:NamedThing 6-hydroxyflavone-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 6-hydroxyflavone <=> 6-O-beta-D-glucosyl-6-hydroxyflavone + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8354 molecular_function owl:Class GO:0106313 biolink:NamedThing methylenetetrahydrofolate reductase NADPH activity Catalysis of the reaction: 5-methyltetrahydrofolate + NADP + = 5,10-methylenetetrahydrofolate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:19817 hjd 2020-09-23T14:20:27Z molecular_function owl:Class GO:0052911 biolink:NamedThing 23S rRNA (guanine(745)-N(1))-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + guanine(745) in 23S rRNA = N(1)-methylguanine(745) in 23S rRNA + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl ribosomal RNA(m(1)G)-methylase activity|23S rRNA m(1)G(745) methyltransferase activity|S-adenosyl-L-methionine:rRNA (guanine-1-N-)-methyltransferase activity|rlmA(I) methyltransferase activity|rRNA(m(1)G)methylase activity|ribosomal ribonucleate guanine 1-methyltransferase activity EC:2.1.1.187|MetaCyc:RXN-11573|KEGG_REACTION:R07233|RHEA:42900 molecular_function owl:Class GO:0061775 biolink:NamedThing cohesin loading activity Facilitating a conformational change to load a cohesin complex around sister chromatids, driven by ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl cohesin ATPase activity|ATP-dependent cohesin loading activity|cohesin loading ATPase https://github.com/geneontology/go-ontology/issues/21700|https://github.com/geneontology/go-ontology/issues/14205 dph 2016-07-13T12:54:43Z molecular_function owl:Class GO:0002939 biolink:NamedThing tRNA N1-guanine methylation The process whereby a guanine in tRNA is methylated at position N1 of the guanine. tmpzr1t_l9r_go_relaxed.owl tRNA m1-guanine biosynthesis hjd 2012-11-09T16:18:41Z biological_process owl:Class GO:1905143 biolink:NamedThing eukaryotic translation initiation factor 2 complex assembly The aggregation, arrangement and bonding together of a set of components to form an eukaryotic translation initiation factor 2 complex. tmpzr1t_l9r_go_relaxed.owl eIF-2 assembly|eukaryotic translation initiation factor 2 complex formation|eIF2 assembly|eIF-2 formation|eIF2 formation dph 2016-04-14T00:25:51Z biological_process owl:Class GO:0003054 biolink:NamedThing circadian regulation of systemic arterial blood pressure by the suprachiasmatic nucleus The process in which the suprachiasmatic nucleus modulates blood pressure at different values with a regularity of approximately 24 hours. tmpzr1t_l9r_go_relaxed.owl SCN regulation of blood pressure|master pacemaker clock regulation of blood pressure biological_process owl:Class GO:0102186 biolink:NamedThing 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NADH(2-) + O2 <=> 4alpha-carboxy,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NAD(1-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11948 molecular_function owl:Class GO:0036443 biolink:NamedThing dermatan 6-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + dermatan = adenosine 3',5'-bisphosphate + dermatan 6'-sulfate. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R07288 bf 2013-10-17T10:41:48Z molecular_function owl:Class GO:0045545 biolink:NamedThing syndecan binding Binding to syndecan, an integral membrane proteoglycan (250-300 kDa) associated largely with epithelial cells. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102189 biolink:NamedThing 4alpha-hydroxymethyl-5alpha-cholesta-7,24-dien-3beta-ol-4alpha-methyl oxidase activity Catalysis of the reaction: 4alpha-hydroxymethyl-5alpha-cholesta-7,24-dien-3beta-ol + O2 + NADH(2-) + H+ <=> 4alpha-formyl-5alpha-cholesta-7,24-dien-3beta-ol + NAD(1-) + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11957 molecular_function owl:Class GO:0018159 biolink:NamedThing peptidyl-methionine oxidation The oxidation of peptidyl-L-methionine to peptidyl-L-methionine sulfone. tmpzr1t_l9r_go_relaxed.owl RESID:AA0251 biological_process owl:Class GO:0070532 biolink:NamedThing BRCA1-B complex A protein complex that contains the BRCA1-BARD1 heterodimer, BACH1 and TopBP1, and binds to DNA during S phase at DNA damage sites. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098641 biolink:NamedThing cadherin binding involved in cell-cell adhesion Any cadherin binding that occurs as part of the process of cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0050351 biolink:NamedThing trimetaphosphatase activity Catalysis of the reaction: H(2)O + trimetaphosphate = 2 H(+) + triphosphate. tmpzr1t_l9r_go_relaxed.owl trimetaphosphate hydrolase activity|inorganic trimetaphosphatase activity RHEA:11088|EC:3.6.1.2|KEGG_REACTION:R02504|MetaCyc:TRIMETAPHOSPHATASE-RXN molecular_function owl:Class GO:0009551 biolink:NamedThing secondary plasmodesma A plasmodesma with a branched structure, often with many channels leading into a larger central cavity; found in older tissues and usually derived from preexisting primary plasmodesmata. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0019085 biolink:NamedThing early viral transcription The first phase of viral transcription that occurs after entry of the virus into the host cell, but prior to viral genome replication. It involves the transcription of genes for non-structural proteins, and for lytic viruses, the early gene products are involved in establishing control over the host cell. tmpzr1t_l9r_go_relaxed.owl immediate early viral mRNA transcription biological_process owl:Class GO:0071059 biolink:NamedThing alpha6-beta1 integrin-CD151 complex A protein complex that consists of an alpha6-beta1 integrin complex bound to the tetraspanin CD151. tmpzr1t_l9r_go_relaxed.owl ITGA6-ITGB1-CD151 complex mah 2009-11-03T04:01:23Z cellular_component owl:Class GO:0023031 biolink:NamedThing MHC class Ib protein binding, via lateral surface Binding to a major histocompatibility complex class Ib molecules via the lateral surface. tmpzr1t_l9r_go_relaxed.owl 2010-02-16T09:30:50Z molecular_function owl:Class GO:0010355 biolink:NamedThing homogentisate farnesyltransferase activity Catalysis of the reaction: homogentisic acid + farnesyl diphosphate = 2-methyl-6-farnesylplastoquinol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052797 biolink:NamedThing 4-O-methyl-glucuronoyl methylesterase activity Catalysis of the reaction: [X]-4-O-methyl-D-glucuronic acid + H2O = [X]-OH + methyl-D-glucuronic acid. This reaction is the hydrolysis of the ester linkage between 4-O-methyl-D-glucuronic acid (MeGlcA) and an alcohol (-OH) group attached to a molecule, denoted here as [X]. tmpzr1t_l9r_go_relaxed.owl glucuronoyl esterase activity molecular_function owl:Class GO:0035718 biolink:NamedThing macrophage migration inhibitory factor binding Binding to the cytokine, macrophage migration inhibitory factor. tmpzr1t_l9r_go_relaxed.owl MIF binding bf 2011-03-03T04:27:16Z molecular_function owl:Class GO:0042309 biolink:NamedThing homoiothermy Any homoeostatic process in which an organism maintains its internal body temperature at a relatively constant value. This is achieved by using metabolic processes to counteract fluctuations in the temperature of the environment. tmpzr1t_l9r_go_relaxed.owl ice nucleation activity|antifreeze activity|ice nucleation inhibitor activity biological_process owl:Class GO:0002482 biolink:NamedThing antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-independent The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family. tmpzr1t_l9r_go_relaxed.owl TAP-independent exogenous peptide antigen processing and presentation via MHC class Ib|exogenous peptide antigen processing and presentation via MHC class Ib, TAP-independent|TAP-independent antigen processing and presentation of exogenous peptide antigen via MHC class Ib biological_process owl:Class GO:0018550 biolink:NamedThing tetrachloro-p-hydroquinone reductive dehalogenase activity Catalysis of the reaction: 2,3,5,6-tetrachlorohydroquinone + 2 glutathione = 2,3,6-trichlorohydroquinone + glutathione disulfide + HCl. tmpzr1t_l9r_go_relaxed.owl tetrachlorohydroquinone reductive dehalogenase activity EC:1.8.99.-|UM-BBD_reactionID:r0314 molecular_function owl:Class GO:0016545 biolink:NamedThing male courtship behavior, veined wing vibration The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behaviour, veined wing vibration|male courtship behavior, wing vibration|male courtship behaviour, wing vibration biological_process owl:Class GO:0045469 biolink:NamedThing negative regulation of R8 cell spacing in compound eye Any process that stops or prevents the correct R8 cell spacing pattern in a compound eye. tmpzr1t_l9r_go_relaxed.owl downregulation of R8 spacing|inhibition of R8 spacing|down-regulation of R8 spacing|down regulation of R8 spacing biological_process owl:Class GO:0008432 biolink:NamedThing JUN kinase binding Binding to JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family. tmpzr1t_l9r_go_relaxed.owl JNK binding molecular_function owl:Class GO:0050496 biolink:NamedThing peptidyl-L-glutamyl 5-omega-hydroxyceramide ester biosynthetic process from peptidyl-glutamine The modification of peptidyl-glutamine residues by deamidation and esterification with omega-hydroxyceramide. tmpzr1t_l9r_go_relaxed.owl peptidyl-L-glutamyl 5-omega-hydroxyceramide ester anabolism from peptidyl-glutamine|peptidyl-L-glutamyl 5-omega-hydroxyceramide ester synthesis from peptidyl-glutamine|peptidyl-L-glutamyl 5-omega-hydroxyceramide ester formation from peptidyl-glutamine RESID:AA0340 biological_process owl:Class GO:0071207 biolink:NamedThing histone pre-mRNA stem-loop binding Binding to a conserved stem-loop structure found in histone pre-mRNAs. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-25T01:25:15Z molecular_function owl:Class GO:0102306 biolink:NamedThing benzil reductase [(S)-benzoin-forming] activity Catalysis of the reaction: (S)-benzoin + NADP(3-) <=> benzil + NADPH(4-) + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:25968|MetaCyc:RXN-12898|EC:1.1.1.320 molecular_function owl:Class GO:0050335 biolink:NamedThing thiocyanate isomerase activity Catalysis of the reaction: benzyl isothiocyanate = benzyl thiocyanate. tmpzr1t_l9r_go_relaxed.owl benzyl-thiocyanate isomerase activity|isothiocyanate isomerase activity RHEA:10004|KEGG_REACTION:R04010|MetaCyc:THIOCYANATE-ISOMERASE-RXN|EC:5.99.1.1 molecular_function owl:Class GO:0102368 biolink:NamedThing beta-amyrin 30-monooxygenase activity Catalysis of the reaction: beta-amyrin + NADPH + H+ + O2 <=> 30-hydroxy-beta-amyrin + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13489 molecular_function owl:Class GO:0018358 biolink:NamedThing protein-phytochromobilin linkage via S-phytochromobilin-L-cysteine The linkage of the chromophore phytochromobilin to phycocyanin or allophycocyanin via S-phytochromobilin-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0133 GO:0018381 biological_process owl:Class GO:0021816 biolink:NamedThing extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration The rearrangements of the microtubule cytoskeleton that result in the extension of a leading process, where this process is involved in the movement of cells along radial glial cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042972 biolink:NamedThing licheninase activity Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3) and (1->4) bonds. tmpzr1t_l9r_go_relaxed.owl lichenase activity|1,3-1,4-beta-glucan 4-glucanohydrolase activity|beta-glucanase activity|mixed linkage beta-glucanase activity|1,3-1,4-beta-D-glucan 4-glucanohydrolase activity|beta-(1->3), (1->4)-D-glucan 4-glucanohydrolase activity|endo-beta-1,3-1,4 glucanase activity|1,3;1,4-beta-glucan 4-glucanohydrolase activity|1,3;1,4-beta-glucan endohydrolase activity MetaCyc:3.2.1.73-RXN|EC:3.2.1.73 molecular_function owl:Class GO:0098650 biolink:NamedThing peptidyl-proline 4-dioxygenase binding Binding to a peptidyl-proline 4-dioxygenase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990448 biolink:NamedThing exon-exon junction complex binding Binding to an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. tmpzr1t_l9r_go_relaxed.owl EJC binding sart 2014-08-06T10:02:46Z molecular_function owl:Class GO:0008805 biolink:NamedThing carbon-monoxide oxygenase activity Catalysis of the reaction: CO + H2O + ferrocytochrome b-561 = CO2 + 2 H+ + 2 ferricytochrome b-561. tmpzr1t_l9r_go_relaxed.owl carbon monoxide oxygenase activity|carbon-monoxide dehydrogenase (cytochrome b-561)|cytochrome b561|carbon monoxide:methylene blue oxidoreductase activity|carbon monoxide oxygenase (cytochrome b-561) activity|carbon monoxide oxidase activity|carbon monoxide,water:cytochrome b-561 oxidoreductase activity Wikipedia:Carbon-monoxide_dehydrogenase_(cytochrome_b-561)|RHEA:48880|MetaCyc:RXN-21452|EC:1.2.5.3|UM-BBD_reactionID:r0650 GO:0047767|GO:0018999 molecular_function owl:Class GO:0044096 biolink:NamedThing type IV pilus A short filamentous structure on the surface of a bacterial cell distinguished from other pili by post-translational N-methylation of the pilin monomers. tmpzr1t_l9r_go_relaxed.owl type IV fimbriae|TFP|type 4 pilus jl 2009-04-22T02:52:55Z cellular_component owl:Class GO:0050310 biolink:NamedThing sulfite dehydrogenase activity Catalysis of the reaction: sulfite + 2 ferricytochrome c + H2O = sulfate + 2 ferrocytochrome c. tmpzr1t_l9r_go_relaxed.owl sulfite cytochrome c reductase activity|sulphite dehydrogenase activity|sulfite-cytochrome c oxidoreductase activity|sulfite:ferricytochrome-c oxidoreductase activity EC:1.8.2.1|MetaCyc:SULFITE-DEHYDROGENASE-RXN|RHEA:14281 molecular_function owl:Class GO:0047010 biolink:NamedThing hydroxycyclohexanecarboxylate dehydrogenase activity Catalysis of the reaction: (1S,3R,4S)-3,4-dihydroxycyclohexane-1-carboxylate + NAD(+) = (1S,4S)-4-hydroxy-3-oxocyclohexane-1-carboxylate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl dihydroxycyclohexanecarboxylate dehydrogenase activity|(-)t-3,t-4-dihydroxycyclohexane-c-1-carboxylate-NAD oxidoreductase activity|(1S,3R,4S)-3,4-dihydroxycyclohexane-1-carboxylate:NAD+ 3-oxidoreductase activity RHEA:10516|EC:1.1.1.166|MetaCyc:1.1.1.166-RXN|KEGG_REACTION:R05315 molecular_function owl:Class GO:0047142 biolink:NamedThing enzyme-thiol transhydrogenase (glutathione-disulfide) activity Catalysis of the reaction: oxidized glutathione + [xanthine dehydrogenase] = reduced glutathione + xanthine-oxidase. tmpzr1t_l9r_go_relaxed.owl xanthine-dehydrogenase:glutathione-disulfide S-oxidoreductase activity|thiol:disulfide oxidoreductase activity|glutathione-dependent thiol:disulfide oxidoreductase activity|[xanthine-dehydrogenase]:oxidized-glutathione S-oxidoreductase activity|xanthine-dehydrogenase:oxidized-glutathione S-oxidoreductase activity|enzyme-thiol transhydrogenase (glutathione-disulphide) activity|enzyme-thiol transhydrogenase (oxidized-glutathione) activity|thiol:disulphide oxidoreductase activity EC:1.8.4.7|MetaCyc:1.8.4.7-RXN molecular_function owl:Class GO:0106321 biolink:NamedThing S-(hydroxymethyl)glutathione dehydrogenase NADP activity Catalysis of the reaction: S-(hydroxymethyl)glutathione + NADP+ = S-formylglutathione + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:19981|EC:1.1.1.284 hjd 2020-09-23T15:26:27Z molecular_function owl:Class GO:0047035 biolink:NamedThing testosterone dehydrogenase (NAD+) activity Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH. tmpzr1t_l9r_go_relaxed.owl 17-ketoreductase activity|testosterone 17beta-dehydrogenase activity|17beta-hydroxysteroid:NAD+ 17-oxidoreductase activity|3alpha(17beta)-HSD|3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity|3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)|testosterone 17-beta-dehydrogenase (NAD+) activity|3alpha(or 17beta)-hydroxysteroid:NAD+ oxidoreductase activity|testosterone 17b-dehydrogenase activity|17-beta-HSD activity|3alpha,17beta-hydroxy steroid dehydrogenase activity|17beta-HSD KEGG_REACTION:R01836|RHEA:14929|MetaCyc:1.1.1.239-RXN|EC:1.1.1.239|Wikipedia:3alpha(17beta)-hydroxysteroid_dehydrogenase_(NAD+)|MetaCyc:TESTOSTERONE-17-BETA-DEHYDROGENASE-RXN GO:0050327 molecular_function owl:Class GO:0018168 biolink:NamedThing protein-phycoerythrobilin linkage via S-phycoerythrobilin-L-cysteine The linkage of the chromophore phycoerythrobilin to phycoerythrocyanin via S-phycoerythrobilin-L-cysteine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0132 biological_process owl:Class GO:0005600 biolink:NamedThing collagen type XIII trimer A collagen homotrimer of alpha1(XIII) chains; type XIII collagen triple helices span the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0102208 biolink:NamedThing 2-polyprenyl-6-hydroxyphenol methylase activity Catalysis of the reaction: S-adenosyl-L-methionine + a 3-(all-trans-polyrenyl)benzene-1,2-diol <=> S-adenosyl-L-homocysteine + H+ + a 2-methoxy-6-(all-trans-polyprenyl)phenol. tmpzr1t_l9r_go_relaxed.owl RHEA:31411|MetaCyc:RXN-12160 molecular_function owl:Class GO:0031515 biolink:NamedThing tRNA (m1A) methyltransferase complex A protein complex involved in the catalysis of the formation of the modified nucleotide 1-methyladenosine (m1A) in tRNA. In yeast, it is a heterotetramer of two subunits, Gcd10p and Gcd14p, while in bacteria and archaea it is a homotetramer. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0098959 biolink:NamedThing retrograde dendritic transport of mitochondrion The directed movement of mitochondria along microtubules in dendrites towards the cell body and away from the postsynapse. tmpzr1t_l9r_go_relaxed.owl retrograde dendrite transport of mitochondria biological_process owl:Class GO:0034559 biolink:NamedThing bisphenol A hydroxylase B activity Catalysis of the reaction: bisphenol A + NADH + H+ + O2 = 1,2-bis(4-hydroxyphenyl)-2-propanol + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0860 molecular_function owl:Class GO:0047755 biolink:NamedThing isocitrate epimerase activity Catalysis of the reaction: D-threo-isocitrate = D-erythro-isocitrate. tmpzr1t_l9r_go_relaxed.owl (1R,2S)-1-hydroxypropane-1,2,3-tricarboxylate 1-epimerase activity KEGG_REACTION:R02318|EC:5.1.2.6|RHEA:10820|MetaCyc:ISOCITRATE-EPIMERASE-RXN molecular_function owl:Class GO:0047416 biolink:NamedThing arylalkyl acylamidase activity Catalysis of the reaction: H2O + N-acetylarylalkylamine = acetate + arylalkylamine. tmpzr1t_l9r_go_relaxed.owl aralkyl acylamidase activity|N-acetylarylalkylamine amidohydrolase activity MetaCyc:3.5.1.76-RXN|RHEA:10352|EC:3.5.1.76 molecular_function owl:Class GO:0033444 biolink:NamedThing AAG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AAG codon. tmpzr1t_l9r_go_relaxed.owl lysine tRNA Note that in the standard genetic code, AAG codes for lysine. molecular_function owl:Class GO:0017168 biolink:NamedThing 5-oxoprolinase (ATP-hydrolyzing) activity Catalysis of the reaction: 5-oxo-L-proline + ATP + 2 H(2)O = L-glutamate + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl pyroglutamic hydrolase activity|L-pyroglutamate hydrolase activity|pyroglutamase activity|5-oxo-L-prolinase activity|pyroglutamate hydrolase activity|5-oxo-L-proline amidohydrolase (ATP-hydrolysing)|5-oxoprolinase (ATP-hydrolysing)|pyroglutamase (ATP-hydrolyzing) activity|5-OPase activity|oxoprolinase activity|pyroglutamase (ATP-hydrolysing)|5-oxoprolinase activity RHEA:10348|MetaCyc:5-OXOPROLINASE-ATP-HYDROLYSING-RXN|Wikipedia:5-oxoprolinase_(ATP-hydrolysing)|Reactome:R-HSA-5603208|EC:3.5.2.9|KEGG_REACTION:R00251|Reactome:R-HSA-1247935 molecular_function owl:Class GO:0035128 biolink:NamedThing post-embryonic forelimb morphogenesis The process, occurring after embryonic development, by which the anatomical structures of the forelimb are generated and organized. The forelimbs are the front limbs of an organism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052586 biolink:NamedThing oxidoreductase activity, acting on other nitrogenous compounds as donors, with a quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl EC:1.7.5.- ai 2010-08-13T10:34:37Z molecular_function owl:Class GO:0150043 biolink:NamedThing structural constituent of synapse-associated extracellular matrix The action of a molecule that contributes to the structural integrity of the extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft. tmpzr1t_l9r_go_relaxed.owl synapse-associated extracellular matrix structural constituent|structural constituent of extra-synaptic extracellular matrix|extra-synaptic extracellular matrix structural constituent bc 2018-04-19T13:42:40Z molecular_function owl:Class GO:0009917 biolink:NamedThing sterol 5-alpha reductase activity Catalysis of the removal of a C-5 double bond in the B ring of a sterol. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018451 biolink:NamedThing epoxide dehydrogenase activity Catalysis of the reaction: ethene oxide + NAD+ + CoA-SH = NADH + H+ + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0595 molecular_function owl:Class GO:0003999 biolink:NamedThing adenine phosphoribosyltransferase activity Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl APRT activity|adenosine phosphoribosyltransferase activity|adenine phosphoribosylpyrophosphate transferase activity|transphosphoribosidase activity|adenylate pyrophosphorylase activity|AMP:diphosphate phospho-D-ribosyltransferase activity|AMP-pyrophosphate phosphoribosyltransferase activity|AMP diphosphorylase activity|AMP pyrophosphorylase activity|adenylic pyrophosphorylase activity RHEA:16609|MetaCyc:ADENPRIBOSYLTRAN-RXN|EC:2.4.2.7|Reactome:R-HSA-74213 molecular_function owl:Class GO:0102753 biolink:NamedThing chlorophyllide b:geranyl-geranyl diphosphate geranyl-geranyltransferase activity Catalysis of the reaction: H+ + chlorophyllide b(1-) + 2-trans,6-trans,10-trans-geranylgeranyl diphosphate <=> geranylgeranyl-chlorophyll b + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7673 molecular_function owl:Class GO:0035683 biolink:NamedThing memory T cell extravasation The migration of a memory T cell from the blood vessels into the surrounding tissue. A memory T cell is a distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive. tmpzr1t_l9r_go_relaxed.owl memory T-cell extravasation bf 2011-02-23T01:10:02Z biological_process owl:Class GO:0036188 biolink:NamedThing abieta-7,13-dien-18-al dehydrogenase activity Catalysis of the reaction: abieta-7,13-diene-18-al + H2O + NAD+ = abieta-7,13-diene-18-oate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl abietadienal dehydrogenase KEGG_REACTION:R06357|EC:1.2.1.74|MetaCyc:1.2.1.74-RXN|RHEA:26225 bf 2012-04-18T01:46:19Z molecular_function owl:Class GO:1990353 biolink:NamedThing Fused-Smurf ubiquitin ligase complex A ubiquitin ligase complex. In D. melanogaster, it regulates ubiquitination and proteolysis of the BMP receptor Thickveins in cystoblasts, potentially by controlling Tkv ubiquitination and degradation. tmpzr1t_l9r_go_relaxed.owl An example of this is FUSED in Drosophila melanogaster (UniProt symbol P23647) in PMID:21145463 (inferred from direct assay). bhm 2014-03-27T14:02:09Z cellular_component owl:Class GO:0004485 biolink:NamedThing methylcrotonoyl-CoA carboxylase activity Catalysis of the reaction: 3-methylbut-2-enoyl-CoA + ATP + bicarbonate = trans-3-methylglutaconyl-CoA + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl methylcrotonyl coenzyme A carboxylase activity|beta-methylcrotonyl CoA carboxylase activity|3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)|beta-methylcrotonyl coenzyme A carboxylase activity|beta-methylcrotonyl-CoA carboxylase activity|MCCC activity|methylcrotonyl-CoA carboxylase activity KEGG_REACTION:R04138|Reactome:R-HSA-508308|EC:6.4.1.4|Reactome:R-HSA-70773|RHEA:13589|MetaCyc:METHYLCROTONYL-COA-CARBOXYLASE-RXN molecular_function owl:Class GO:0002498 biolink:NamedThing proteolysis within endoplasmic reticulum associated with antigen processing and presentation The hydrolysis of a peptide bond or bonds within a protein by ER resident proteases contributing to antigen processing and presentation. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum proteolysis associated with antigen processing and presentation|ER proteolysis associated with antigen processing and presentation|proteolysis within ER associated with antigen processing and presentation biological_process owl:Class GO:0045518 biolink:NamedThing interleukin-22 receptor binding Binding to an interleukin-22 receptor. tmpzr1t_l9r_go_relaxed.owl IL-22|interleukin-22 receptor ligand molecular_function owl:Class GO:1990606 biolink:NamedThing membrane scission GTPase motor activity Generation of a 'twisting' activity resulting in the scission of a membrane, driven by GTP hydrolysis. tmpzr1t_l9r_go_relaxed.owl vw 2015-01-19T14:26:50Z molecular_function owl:Class GO:0009347 biolink:NamedThing aspartate carbamoyltransferase complex A multienzyme complex that catalyzes the formation N-carbamoyl-L-aspartate from carbamoyl phosphate and L-aspartate. It exhibits a variety of architectural organizations, but in all microorganisms the core catalytic component is a homotrimer of approximately 34 kDa polypeptides. tmpzr1t_l9r_go_relaxed.owl Note that in eukaryotes, aspartate carbamoyltransferase is usually a single polypeptide, not a complex, and should therefore not be annotated to this component term. cellular_component owl:Class GO:0009014 biolink:NamedThing succinyl-diaminopimelate desuccinylase activity Catalysis of the reaction: N-succinyl-LL-2,6-diaminopimelate + H(2)O = LL-2,6-diaminopimelate + succinate. tmpzr1t_l9r_go_relaxed.owl N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase activity|N-succinyl-L-alpha,epsilon-diaminopimelic acid deacylase activity MetaCyc:SUCCDIAMINOPIMDESUCC-RXN|KEGG_REACTION:R02734|RHEA:22608|EC:3.5.1.18 molecular_function owl:Class GO:0052871 biolink:NamedThing alpha-tocopherol omega-hydroxylase activity Catalysis of the reaction: alpha-tocopherol + O2 + NADPH + H+ = 13'-hydroxy-alpha-tocopherol + NADP+ + H2O . tmpzr1t_l9r_go_relaxed.owl alpha-tocopherol 13-hydroxylase activity MetaCyc:RXN-11003 ai 2012-01-30T03:06:27Z molecular_function owl:Class GO:0018698 biolink:NamedThing vinyl chloride reductive dehalogenase activity Catalysis of the reaction: vinyl chloride + 2 H+ + 2 e- = HCl + ethene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0352|EC:1.97.1.-|MetaCyc:VCREDCHLOR-RXN molecular_function owl:Class GO:0052605 biolink:NamedThing gamma-tocopherol cyclase activity Catalysis of the reaction: 2,3-dimethyl-6-phytyl-1,4-benzoquinone = gamma-tocopherol. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R07502|RHEA:37983|MetaCyc:RXN-2543 molecular_function owl:Class GO:0003034 biolink:NamedThing detection of increased carbon dioxide by aortic body chemoreceptor signaling The process in which information about the levels of carbon dioxide are received and are converted to a molecular signal by chemoreceptors in an aortic body. tmpzr1t_l9r_go_relaxed.owl detection of increased carbon dioxide by aortic body chemoreceptor signalling biological_process owl:Class GO:1905218 biolink:NamedThing cellular response to astaxanthin Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an astaxanthin stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to (3S,3'S)-3,3'-dihydroxy-beta,beta-carotene-4,4'-dione sl 2016-06-06T21:30:09Z biological_process owl:Class GO:0033791 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity Catalysis of the reaction: (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA + H2O + acceptor = (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oyl-CoA + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate 24-hydroxylase activity|(25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA:acceptor 24-oxidoreductase (24R-hydroxylating) activity|THCA-CoA oxidase activity|trihydroxycoprostanoyl-CoA oxidase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA oxidase activity|THC-CoA oxidase activity MetaCyc:1.17.99.3-RXN|RHEA:15733|EC:1.17.99.3 molecular_function owl:Class GO:0018627 biolink:NamedThing 2-aminobenzenesulfonate 2,3-dioxygenase activity Catalysis of the reaction: 2-aminobenzenesulfonate + 2 H(+) + NADH + O(2) = 2,3-dihydroxybenzenesulfonate + NAD(+) + NH(4)(+). 2,3-dihydroxybenzenesulfonate is also known as 3-sulfocatechol. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzenesulfonate,NADH:oxygen oxidoreductase (2,3-hydroxylating, ammonia-forming)|2-aminobenzenesulphonate dioxygenase activity|2-aminosulfobenzene 2,3-dioxygenase activity|2-aminobenzenesulphonate 2,3-dioxygenase activity|2-aminobenzenesulfonate dioxygenase activity RHEA:23468|KEGG_REACTION:R05156|UM-BBD_reactionID:r0218|MetaCyc:2ASDOSALCAL-RXN|EC:1.14.12.14 GO:0018605 molecular_function owl:Class GO:0034211 biolink:NamedThing GTP-dependent protein kinase activity GTP dependent catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate. tmpzr1t_l9r_go_relaxed.owl The reaction requires the presence of GTP. molecular_function owl:Class GO:0061840 biolink:NamedThing high-affinity ferrous iron transmembrane transporter activity Enables the transfer of ferrous iron (Fe(II) or Fe2+) ions from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high-affinity ferrous iron uptake transmembrane transporter activity|high affinity ferrous uptake transmembrane transporter activity molecular_function owl:Class GO:0051215 biolink:NamedThing RNAi-mediated antiviral immunity against DNA virus Gene silencing induced by DNA viruses leading to a sequence-specific degradation of target mRNAs or post-transcriptional gene silencing. In plants, DCL3 is the primary Dicer to detect DNA viruses. tmpzr1t_l9r_go_relaxed.owl DNA virus induced gene silencing|DNA VIGS|DNA virus-induced gene silencing https://github.com/geneontology/go-ontology/issues/19958 biological_process owl:Class GO:0102927 biolink:NamedThing beta-chaconine rhamnosyltransferase activity Catalysis of the reaction: beta-chaconine + UDP-L-rhamnose = H+ + alpha-chaconine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8883 molecular_function owl:Class GO:0106306 biolink:NamedThing protein serine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:20629|EC:3.1.3.16 hjd 2020-09-09T19:36:32Z molecular_function owl:Class GO:0009293 biolink:NamedThing transduction The transfer of genetic information to a bacterium from a bacteriophage or between bacterial or yeast cells mediated by a phage vector. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Transduction_(genetics) biological_process owl:Class GO:0099141 biolink:NamedThing cellular response to protozoan Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a protozoan. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050396 biolink:NamedThing vomifoliol 4'-dehydrogenase activity Catalysis of the reaction: (6S,9R)-6-hydroxy-3-oxo-alpha-ionol + NAD(+) = (6S)-6-hydroxy-3-oxo-alpha-ionone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl vomifoliol:NAD+ 4'-oxidoreductase activity RHEA:22804|KEGG_REACTION:R04412|EC:1.1.1.221|MetaCyc:VOMIFOLIOL-4-DEHYDROGENASE-RXN molecular_function owl:Class GO:0035717 biolink:NamedThing chemokine (C-C motif) ligand 7 binding Binding to chemokine (C-C motif) ligand 7. tmpzr1t_l9r_go_relaxed.owl CCL7 binding bf 2011-03-03T04:25:41Z molecular_function owl:Class GO:0045485 biolink:NamedThing omega-6 fatty acid desaturase activity Catalysis of the introduction of an omega-6 double bond into the fatty acid hydrocarbon chain. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2046089|Reactome:R-HSA-2046092 molecular_function owl:Class GO:0031637 biolink:NamedThing regulation of neuronal synaptic plasticity in response to neurotrophin The process in which a neurotrophic factor induces neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers. tmpzr1t_l9r_go_relaxed.owl neurotrophin-induced neuronal synaptic plasticity biological_process owl:Class GO:0003958 biolink:NamedThing NADPH-hemoprotein reductase activity Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein. tmpzr1t_l9r_go_relaxed.owl NADPH--ferrihemoprotein reductase activity|NADP--cytochrome c reductase activity|NADPH--ferricytochrome c oxidoreductase activity|ferrihemoprotein P-450 reductase activity|dihydroxynicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity|NADPH--cytochrome P450 reductase activity|NADPH-cytochrome P-450 oxidoreductase activity|TPNH-cytochrome c reductase activity|TPNH(2) cytochrome c reductase activity|NADPH:ferrihemoprotein oxidoreductase activity|aldehyde reductase (NADPH-dependent) activity|CPR activity|NADPH:cytochrome c reductase activity|NADPH-dependent cytochrome c reductase activity|NADPH--cytochrome c oxidoreductase activity|TPNH2 cytochrome c reductase activity|NADPH-cytochrome p-450 reductase activity|NADPH--cytochrome c reductase activity|FAD-cytochrome c reductase activity|reduced nicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity|NADPH:P-450 reductase activity|NADPH:P450 reductase activity|NADPH-ferrihemoprotein reductase activity|reductase, cytochrome c (reduced nicotinamide adenine dinucleotide phosphate) activity|cytochrome c reductase (reduced nicotinamide adenine dinucleotide phosphate, NADPH, NADPH-dependent) activity|cytochrome P-450 reductase activity|POR|cytochrome P450 reductase activity|NADPH:hemoprotein oxidoreductase activity|NADPH:cytochrome P450 reductase activity|NADPH--cytochrome P450 oxidoreductase activity|NADP--cytochrome reductase activity EC:1.6.2.4|RHEA:24040|Reactome:R-HSA-76494|MetaCyc:NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN molecular_function owl:Class GO:0035858 biolink:NamedThing eosinophil fate determination The cell fate determination process in which a cell becomes capable of differentiating autonomously into an eosinophil cell regardless of its environment; upon determination, the cell fate cannot be reversed. tmpzr1t_l9r_go_relaxed.owl eosinophil cell fate determination bf 2011-05-17T10:43:35Z biological_process owl:Class GO:0005522 biolink:NamedThing profilin binding Binding to profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0044678 biolink:NamedThing CoB-CoM heterodisulfide reductase complex A protein complex that in Methanobacterium thermoautotrophicum is composed of six subunits, and in Methanosarcina barkeri contains is composed of either two subunits or nine subunits. Catalyzes the conversion of coenzyme B, coenzyme M, and methanophenazine to form N-{7-[(2-sulfoethyl)dithio]heptanoyl}-3-O-phospho-L-threonine and dihydromethanophenazine. tmpzr1t_l9r_go_relaxed.owl coenzyme M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase complex|hydrogen:coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide oxidoreductase complex jl 2012-08-09T11:01:43Z cellular_component owl:Class GO:0018631 biolink:NamedThing phenylacetate hydroxylase activity Catalysis of the reaction: phenylacetate + NADH + O2 = NAD+ + OH- + 2-hydroxyphenylacetate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0036|EC:1.14.13.- molecular_function owl:Class GO:0140290 biolink:NamedThing peptidyl-serine ADP-deribosylation The removal of ADP-ribose from ADP-ribosylserine. tmpzr1t_l9r_go_relaxed.owl pg 2018-11-22T14:32:30Z biological_process owl:Class GO:0047391 biolink:NamedThing alkylglycerophosphoethanolamine phosphodiesterase activity Catalysis of the reaction: H2O + 1-alkyl-sn-glycero-3-phosphoethanolamine = ethanolamine + 1-alkyl-sn-glycerol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl 1-alkyl-sn-glycero-3-phosphoethanolamine ethanolaminehydrolase activity|lysophospholipase D activity RHEA:15965|EC:3.1.4.39|MetaCyc:3.1.4.39-RXN molecular_function owl:Class GO:0080045 biolink:NamedThing quercetin 3'-O-glucosyltransferase activity Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3'-hydroxy group of a quercetin molecule. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0009763 biolink:NamedThing NAD-malic enzyme C4 photosynthesis The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is NAD-malic enzyme. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0031735 biolink:NamedThing CCR10 chemokine receptor binding Binding to a CCR10 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl CCR10 chemokine receptor ligand molecular_function owl:Class GO:0010076 biolink:NamedThing maintenance of floral meristem identity The process in which an organism retains a population of floral meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042271 biolink:NamedThing susceptibility to natural killer cell mediated cytotoxicity The process of causing a cell to become susceptible to natural killer cell mediated cytotoxicity. tmpzr1t_l9r_go_relaxed.owl susceptibility to NK cell mediated cell death|susceptibility to natural killer cell mediated cell killing|susceptibility to NK cell mediated cytotoxicity|susceptibility to NK cell mediated cell killing|susceptibility to natural killer cell mediated cell death|susceptibility to natural killer cell mediated cytolysis|susceptibility to NK cell mediated cytolysis Note that this term is intended for cell-surface molecules on a target cell which interact with activating receptors on a natural killer cell to promote natural killer cell mediated cytotoxicity. biological_process owl:Class GO:0000010 biolink:NamedThing trans-hexaprenyltranstransferase activity Catalysis of the reaction: all-trans-hexaprenyl diphosphate + isopentenyl diphosphate = all-trans-heptaprenyl diphosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:20836 molecular_function owl:Class GO:0050616 biolink:NamedThing secologanin synthase activity Catalysis of the reaction: loganin + NADPH + H+ + O2 = secologanin + NADP+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl loganin:oxygen oxidoreductase (ring-cleaving) EC:1.14.19.62|MetaCyc:1.3.3.9-RXN|RHEA:20585 molecular_function owl:Class GO:0031027 biolink:NamedThing glutamate synthase complex (NADH) A protein complex that in yeast consists of a large and a small subunit. Possesses glutamate synthase (NADH) activity. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018572 biolink:NamedThing 3,5-dichlorocatechol 1,2-dioxygenase activity Catalysis of the reaction: 3,5-dichlorocatechol + O2 = 2 H+ + 2,4-dichloro-cis,cis-muconate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0276 molecular_function owl:Class GO:0047059 biolink:NamedThing polyvinyl alcohol dehydrogenase (cytochrome) activity Catalysis of the reaction: polyvinyl alcohol + ferricytochrome c = oxidized polyvinyl alcohol + ferrocytochrome c + H+. tmpzr1t_l9r_go_relaxed.owl polyvinyl-alcohol:acceptor oxidoreductase activity|PVA dehydrogenase activity|polyvinyl-alcohol:(acceptor) oxidoreductase activity|polyvinyl alcohol:ferricytochrome-c oxidoreductase activity RHEA:20157|MetaCyc:RXN-11316|KEGG_REACTION:R03136|EC:1.1.2.6 Formerly EC:1.1.99.23. molecular_function owl:Class GO:0018802 biolink:NamedThing 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity Catalysis of the reaction: 2,4-dihydroxy-hept-trans-2-ene-1,7-dioate = pyruvate + succinic semialdehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0370 molecular_function owl:Class GO:0047053 biolink:NamedThing (S)-cheilanthifoline synthase activity Catalysis of the reaction: (S)-scoulerine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-cheilanthifoline + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl (S)-scoulerine oxidase (methylenedioxy-bridge-forming) activity|(S)-scoulerine,NADPH:oxygen oxidoreductase (methylenedioxy-bridge-forming) https://github.com/geneontology/go-ontology/issues/21133 MetaCyc:1.14.21.2-RXN|EC:1.14.19.65|RHEA:20485|KEGG_REACTION:R03834 molecular_function owl:Class GO:0102244 biolink:NamedThing 3-aminopropanal dehydrogenase activity Catalysis of the reaction: 3-ammoniopropanal + NAD + H2O <=> 2 H+ + beta-alanine + NADH. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12332 molecular_function owl:Class GO:0045728 biolink:NamedThing respiratory burst after phagocytosis A phase of elevated metabolic activity, during which oxygen consumption increases, that occurs in neutrophils, monocytes, and macrophages shortly after phagocytosing material. An enhanced uptake of oxygen leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, which play a part in microbiocidal activity. tmpzr1t_l9r_go_relaxed.owl oxidative burst after phagocytosis|metabolic burst after phagocytosis biological_process owl:Class GO:0050446 biolink:NamedThing azobenzene reductase activity Catalysis of the reaction: N,N-dimethyl-1,4-phenylenediamine + aniline + NADP+ = 4-(dimethylamino)azobenzene + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH-dependent azoreductase activity|NC-reductase activity|N,N-dimethyl-4-phenylazoaniline azoreductase activity|NADPH:4-(dimethylamino)azobenzene oxidoreductase activity|p-dimethylaminoazobenzene azoreductase activity|azo-dye reductase activity|azoreductase activity|NADPH2-dependent azoreductase activity|N,N-dimethyl-1,4-phenylenediamine, aniline:NADP+ oxidoreductase activity|azo reductase activity|dimethylaminobenzene reductase activity|nicotinamide adenine dinucleotide (phosphate) azoreductase activity|dibromopropylaminophenylazobenzoic azoreductase activity|NAD(P)H:1-(4'-sulfophenylazo)-2-naphthol oxidoreductase activity|p-aminoazobenzene reductase activity|new coccine (NC)-reductase|orange II azoreductase activity|NADPH2:4-(dimethylamino)azobenzene oxidoreductase activity|orange I azoreductase activity|methyl red azoreductase activity|New coccine (NC)-reductase activity RHEA:16269|MetaCyc:AZOBENZENE-REDUCTASE-RXN|EC:1.7.1.6|UM-BBD_reactionID:r0808 molecular_function owl:Class GO:0071912 biolink:NamedThing asynchronous neurotransmitter secretion Release of neurotransmitter at the synapse that persists for tens to hundreds of milliseconds after action potential invasion. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-22T01:45:35Z biological_process owl:Class GO:0000408 biolink:NamedThing EKC/KEOPS complex A protein complex involved in t6A tRNA modification. For example, in Saccharomyces cerevisiae the complex contains Bud32p, Kae1p, Gon7p, Cgi121p, and Pcc1p. tmpzr1t_l9r_go_relaxed.owl endopeptidase-like kinase chromatin-associated protein complex|threonyl-carbamoly transferase complex|TCTC|kinase, putative endopeptidase and other proteins of small size protein complex|KEOPS/EKC complex Originally proposed to be involved in transcription as well as promoting telomere uncapping and telomere elongation. cellular_component owl:Class GO:0047168 biolink:NamedThing isocitrate O-dihydroxycinnamoyltransferase activity Catalysis of the reaction: caffeoyl-CoA + isocitrate = 2-caffeoylisocitrate + CoA. tmpzr1t_l9r_go_relaxed.owl caffeoyl-CoA:isocitrate 3-O-(3,4-dihydroxycinnamoyl)transferase activity MetaCyc:2.3.1.126-RXN|EC:2.3.1.126|RHEA:20756|KEGG_REACTION:R01946 molecular_function owl:Class GO:0050484 biolink:NamedThing GMP 5'-nucleotidase activity Catalysis of the reaction: 5'-GMP + H2O = guanosine + phosphate. tmpzr1t_l9r_go_relaxed.owl GMP 5' nucleotidase activity|IMP-GMP specific 5'-nucleotidase activity MetaCyc:RXN-7609|RHEA:27714 molecular_function owl:Class GO:0051980 biolink:NamedThing iron-nicotianamine transmembrane transporter activity Enables the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Fe-NA chelate transporter activity molecular_function owl:Class GO:0000791 biolink:NamedThing euchromatin A dispersed and relatively uncompacted form of chromatin. tmpzr1t_l9r_go_relaxed.owl nuclear euchromatin NIF_Subcellular:sao445485807|Wikipedia:Euchromatin GO:0005719 cellular_component owl:Class GO:0009376 biolink:NamedThing HslUV protease complex A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. tmpzr1t_l9r_go_relaxed.owl ClpYQ protease complex cellular_component owl:Class GO:0033281 biolink:NamedThing TAT protein transport complex A complex of three proteins integral to the cytoplasmic membrane of bacteria and membranes of organelles derived from bacteria (chloroplasts and mitochondria) involved in membrane transport of folded proteins. tmpzr1t_l9r_go_relaxed.owl TAT protein secretion complex|Twin-arginine translocation complex|TAT protein translocation system complex cellular_component owl:Class GO:0031013 biolink:NamedThing troponin I binding Binding to troponin I, the inhibitory subunit of the troponin complex. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1901498 biolink:NamedThing response to tetralin Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetralin stimulus. tmpzr1t_l9r_go_relaxed.owl tt 2012-10-16T15:10:22Z biological_process owl:Class GO:0050181 biolink:NamedThing phorbol-diester hydrolase activity Catalysis of the reaction: H(2)O + phorbol 12,13-dibutanoate = butanoate + H(+) + phorbol 13-butanoate. tmpzr1t_l9r_go_relaxed.owl phorbol-12,13-diester 12-ester hydrolase activity|PDEH|12,13-diacylphorbate 12-acylhydrolase activity|diacylphorbate 12-hydrolase activity EC:3.1.1.51|KEGG_REACTION:R04119|MetaCyc:PHORBOL-DIESTER-HYDROLASE-RXN|RHEA:21316 molecular_function owl:Class GO:0031085 biolink:NamedThing BLOC-3 complex A protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules. The human complex contains the Hps1 and Hps4 proteins. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0034301 biolink:NamedThing endospore formation The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018563 biolink:NamedThing 2,3-dihydroxy-ethylbenzene 1,2-dioxygenase activity Catalysis of the reaction: 2,3-dihydroxyethylbenzene + O2 = H+ + 2-hydroxy-6-oxoocta-2,4-dienoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0310|EC:1.13.11.- molecular_function owl:Class GO:0050392 biolink:NamedThing vicianin beta-glucosidase activity Catalysis of the reaction: (R)-vicianin + H(2)O = mandelonitrile + vicianose. tmpzr1t_l9r_go_relaxed.owl vicianin b-glucosidase activity|(R)-vicianin beta-D-glucohydrolase activity|vicianin hydrolase activity EC:3.2.1.119|KEGG_REACTION:R03642|MetaCyc:VICIANIN-BETA-GLUCOSIDASE-RXN|RHEA:14041 molecular_function owl:Class GO:1905054 biolink:NamedThing calcium-induced calcium release activity involved in regulation of presynaptic cytosolic calcium ion concentration Any calcium-induced calcium release activity that is involved in regulation of presynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium-induced calcium release activity involved in regulation of presynaptic cytosolic calcium levels dos 2016-03-17T12:12:53Z molecular_function owl:Class GO:0038143 biolink:NamedThing ERBB3:ERBB2 complex A heterodimeric complex between the tyrosine kinase receptor ERBB2 and a ligand-activated receptor ERBB3. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB3. tmpzr1t_l9r_go_relaxed.owl EGFR:ERBB2 heterodimer|NRG1/2:ERBB3:ERBB2 bf 2012-03-30T02:16:56Z cellular_component owl:Class GO:0035750 biolink:NamedThing protein localization to myelin sheath abaxonal region Any process in which a protein is transported to, and/or maintained in, the abaxonal region of the myelin sheath. The abaxonal region is the region of the myelin sheath furthest from the axon. tmpzr1t_l9r_go_relaxed.owl protein localisation to myelin sheath abaxonal region bf 2011-03-23T10:20:06Z biological_process owl:Class GO:0007207 biolink:NamedThing phospholipase C-activating G protein-coupled acetylcholine receptor signaling pathway The series of molecular signals generated as a consequence of a G protein-coupled acetylcholine receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent release of inositol trisphosphate (IP3) and diacylglycerol (DAG). tmpzr1t_l9r_go_relaxed.owl activation of phospholipase C activity by G-protein coupled acetylcholine receptor signaling pathway|muscarinic receptor signaling pathway via activation of PLC|phospholipase C-activating G-protein coupled acetylcholine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signalling pathway|muscarinic acetylcholine receptor, phospholipase C activating pathway biological_process owl:Class GO:0048510 biolink:NamedThing regulation of timing of transition from vegetative to reproductive phase The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0032358 biolink:NamedThing oxidized pyrimidine DNA binding Binding to a DNA region containing an oxidized pyrimidine residue. tmpzr1t_l9r_go_relaxed.owl oxidized pyrimidine base DNA binding|oxidized pyrimidine nucleobase DNA binding|oxidised pyrimidine DNA binding molecular_function owl:Class GO:0050491 biolink:NamedThing sulcatone reductase activity Catalysis of the reaction: NAD(+) + sulcatol = H(+) + NADH + sulcatone. tmpzr1t_l9r_go_relaxed.owl sulcatol:NAD+ oxidoreductase activity RHEA:24484|EC:1.1.1.260|MetaCyc:1.1.1.260-RXN|KEGG_REACTION:R05678 molecular_function owl:Class GO:0019423 biolink:NamedThing sulfur oxidation, ferric ion-dependent A sulfur oxidation process that proceeds via the reaction catalyzed by sulfur:ferric ion oxidoreductase, and requires the presence of ferric ion (Fe3+). tmpzr1t_l9r_go_relaxed.owl sulphur oxidation, ferric ion-dependent MetaCyc:FESULFOX-PWY biological_process owl:Class GO:0004044 biolink:NamedThing amidophosphoribosyltransferase activity Catalysis of the reaction: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + L-glutamine + H(2)O. tmpzr1t_l9r_go_relaxed.owl 5'-phosphoribosylpyrophosphate amidotransferase activity|alpha-5-phosphoribosyl-1-pyrophosphate amidotransferase activity|glutamine phosphoribosylpyrophosphate amidotransferase activity|phosphoribosyldiphosphate 5-amidotransferase activity|5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)|phosphoribosylpyrophosphate glutamyl amidotransferase activity|5-phosphororibosyl-1-pyrophosphate amidotransferase activity|5-phosphoribosyl-1-pyrophosphate amidotransferase activity|glutamine phosphoribosyldiphosphate amidotransferase activity|phosphoribosyl pyrophosphate amidotransferase activity|phosphoribose pyrophosphate amidotransferase activity|glutamine ribosylpyrophosphate 5-phosphate amidotransferase activity|glutamine 5-phosphoribosylpyrophosphate amidotransferase activity MetaCyc:PRPPAMIDOTRANS-RXN|EC:2.4.2.14|RHEA:14905|Reactome:R-HSA-73815|KEGG_REACTION:R01072 molecular_function owl:Class GO:0004636 biolink:NamedThing phosphoribosyl-ATP diphosphatase activity Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H(2)O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl 1-(5-phosphoribosyl)-ATP diphosphohydrolase activity|phosphoribosyl-ATP pyrophosphatase activity|phosphoribosyladenosine triphosphate pyrophosphatase activity MetaCyc:HISTPRATPHYD-RXN|KEGG_REACTION:R04035|EC:3.6.1.31|RHEA:22828 molecular_function owl:Class GO:0034005 biolink:NamedThing germacrene-A synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-(R)-germacrene A + diphosphate. tmpzr1t_l9r_go_relaxed.owl (+)-(10R)-germacrene A synthase activity|2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (germacrene-A-forming) activity|2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(+)-germacrene-A-forming] activity|germacrene A synthase activity|GAS|(+)-germacrene A synthase activity RHEA:12516|KEGG_REACTION:R07649|MetaCyc:4.2.3.23-RXN|EC:4.2.3.23 molecular_function owl:Class GO:0000417 biolink:NamedThing HIR complex A protein complex proposed to be involved in replication-independent nucleosome assembly, by promoting histone deposition onto DNA. For example, in Saccharomyces, the complex contains Hir1p, Hir2p, Hir3p, and Hpc2p. tmpzr1t_l9r_go_relaxed.owl HIRA complex cellular_component owl:Class GO:0039615 biolink:NamedThing T=1 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=1 symmetry. The T=1 capsid is composed of 12 pentameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:1057 bf 2012-07-18T01:46:17Z cellular_component owl:Class GO:0008994 biolink:NamedThing rhamnulose-1-phosphate aldolase activity Catalysis of the reaction: L-rhamnulose 1-phosphate = glycerone phosphate + (S)-lactaldehyde. tmpzr1t_l9r_go_relaxed.owl L-rhamnulose 1-phosphate aldolase activity|rhamnulose phosphate aldolase activity|L-rhamnulose-phosphate aldolase activity|L-rhamnulose-1-phosphate lactaldehyde-lyase activity|L-rhamnulose-1-phosphate S-lactaldehyde-lyase (glycerone-phosphate-forming) EC:4.1.2.19|RHEA:19689|MetaCyc:RHAMNULPALDOL-RXN molecular_function owl:Class GO:0044674 biolink:NamedThing methyl coenzyme M reductase complex A hexameric complex consisting of three polypeptides in an alpha2beta2gamma2 arrangement. Involved in the reduction of the coenzyme M-bound methyl group to methane, which is the final step in methanogenesis. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-09T10:52:33Z cellular_component owl:Class GO:0110010 biolink:NamedThing basolateral protein secretion The controlled release of proteins from a cell at the sides which interface adjacent cells and near the base. tmpzr1t_l9r_go_relaxed.owl kmv biological_process owl:Class GO:0047569 biolink:NamedThing 3-oxoadipate CoA-transferase activity Catalysis of the reaction: succinyl-CoA + 3-oxoadipate = succinate + 3-oxoadipyl-CoA. tmpzr1t_l9r_go_relaxed.owl 3-oxoadipate succinyl-CoA transferase activity|3-oxoadipate coenzyme A-transferase activity|succinyl-CoA:3-oxoadipate CoA-transferase activity|beta-ketoadipate:succinyl-CoA transferase activity UM-BBD_reactionID:r1050|RHEA:12048|EC:2.8.3.6|MetaCyc:3-OXOADIPATE-COA-TRANSFERASE-RXN molecular_function owl:Class GO:0071872 biolink:NamedThing cellular response to epinephrine stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epinephrine stimulus. Epinephrine is a catecholamine that has the formula C9H13NO3; it is secreted by the adrenal medulla to act as a hormone, and released by certain neurons to act as a neurotransmitter active in the central nervous system. tmpzr1t_l9r_go_relaxed.owl cellular response to adrenaline stimulus Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. mah 2010-09-13T03:31:40Z biological_process owl:Class GO:0045483 biolink:NamedThing aristolochene synthase activity Catalysis of the reaction: trans,trans-farnesyl diphosphate = aristolochene + diphosphate. tmpzr1t_l9r_go_relaxed.owl trans,trans-farnesyl diphosphate aristolochene-lyase activity|trans,trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, aristolochene-forming)|2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, aristolochene-forming)|sesquiterpene cyclase activity EC:4.2.3.9|RHEA:19825|MetaCyc:ARISTOLOCHENE-SYNTHASE-RXN molecular_function owl:Class GO:0046428 biolink:NamedThing 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity Catalysis of the reaction: 1,4-dihydroxy-2-naphthoate + polyprenylpyrophosphate = dimethylmenaquinone + diphosphate + CO2. tmpzr1t_l9r_go_relaxed.owl 1,4-Dihydroxy-2-naphtoate prenyltransferase activity EC:2.5.1.74|RHEA:30099|MetaCyc:DMK-RXN molecular_function owl:Class GO:0019151 biolink:NamedThing galactose 1-dehydrogenase activity Catalysis of the reaction: D-galactose + NAD+ = D-galactono-1,4-lactone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl D-galactose:NAD+ 1-oxidoreductase activity|NAD-dependent D-galactose dehydrogenase activity|beta-galactose dehydrogenase activity|D-galactose 1-dehydrogenase activity|D-galactose dehydrogenase activity EC:1.1.1.48|MetaCyc:GALACTODEHYDROG-RXN|RHEA:21296 molecular_function owl:Class GO:0097348 biolink:NamedThing host cell endocytic vesicle membrane The lipid bilayer surrounding a host cell endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-25T10:31:34Z cellular_component owl:Class GO:0071100 biolink:NamedThing alphaV-beta8 integrin-MMP14-TGFbeta-1 complex A protein complex that consists of an alphaV-beta8 integrin complex bound to matrix metalloproteinase 14 and transforming growth factor beta-1 (TGFbeta-1). tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB8-MMP14-TGFB1 complex mah 2009-11-06T04:52:43Z cellular_component owl:Class GO:1904493 biolink:NamedThing tetrahydrofolyl-poly(glutamate) polymer binding Binding to tetrahydrofolyl-poly(glutamate) polymer. tmpzr1t_l9r_go_relaxed.owl hal 2015-07-20T10:34:28Z molecular_function owl:Class GO:0070287 biolink:NamedThing ferritin receptor activity Combining with ferritin, and delivering ferritin into the cell via endocytosis. tmpzr1t_l9r_go_relaxed.owl ferritin complex receptor activity molecular_function owl:Class GO:0017084 biolink:NamedThing delta1-pyrroline-5-carboxylate synthetase activity Catalysis of the reaction: L-glutamate + ATP + NADPH = ADP + L-glutamate gamma-semialdehyde + NADP+ + phosphate. tmpzr1t_l9r_go_relaxed.owl D1-pyrroline-5-carboxylate synthetase activity Reactome:R-HSA-508040|RHEA:33207 molecular_function owl:Class GO:0102740 biolink:NamedThing theobromine:S-adenosyl-L-methionine 1-N-methyltransferase activity Catalysis of the reaction: theobromine + S-adenosyl-L-methionine <=> H+ + caffeine + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:20944|EC:2.1.1.160|MetaCyc:RXN-7599 molecular_function owl:Class GO:0038142 biolink:NamedThing EGFR:ERBB2 complex A heterodimeric complex between the tyrosine kinase receptor ERBB2 and a ligand-activated epidermal growth factor receptor (EGFR/ERBB1). ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as EGFR. tmpzr1t_l9r_go_relaxed.owl EGFR:ERBB2 heterodimer|EGF:EGFR:ERBB2 complex bf 2012-03-30T02:10:38Z cellular_component owl:Class GO:0030411 biolink:NamedThing scytalone dehydratase activity Catalysis of the reaction: scytalone = 1,3,8-trihydroxynaphthalene + H(2)O. tmpzr1t_l9r_go_relaxed.owl scytalone 7,8-hydro-lyase (1,3,8-trihydroxynaphthalene-forming)|scytalone 7,8-hydro-lyase activity KEGG_REACTION:R02907|RHEA:24396|MetaCyc:SCYTALONE-DEHYDRATASE-RXN|EC:4.2.1.94 molecular_function owl:Class GO:0097162 biolink:NamedThing MADS box domain binding Binding to a MADS box domain, a protein domain that encodes the DNA-binding MADS domain. The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are generally transcription factors. The length of the MADS-box is in the range of 168 to 180 base pairs. tmpzr1t_l9r_go_relaxed.owl pr 2011-09-27T10:10:59Z molecular_function owl:Class GO:0102043 biolink:NamedThing isopentenyl phosphate kinase activity Catalysis of the reaction: isopentenyl phosphate(2-) + ATP(4-) <=> isopentenyl diphosphate(3-) + ADP(3-). tmpzr1t_l9r_go_relaxed.owl RHEA:33963|MetaCyc:RXN-10068|EC:2.7.4.26 molecular_function owl:Class GO:0016543 biolink:NamedThing male courtship behavior, orientation prior to leg tapping and wing vibration The process during courtship, where the male orients towards a potential partner. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behavior, orientation|male courtship behaviour, orientation|male courtship behaviour, orientation prior to leg tapping and wing vibration biological_process owl:Class GO:0018828 biolink:NamedThing halohydrin hydrogen-halide-lyase A activity Catalysis of the elimination of HCl from a chloro- or bromopropanol, yielding an epoxypropane. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0048 molecular_function owl:Class GO:0047397 biolink:NamedThing dolichylphosphate-glucose phosphodiesterase activity Catalysis of the reaction: dolichyl beta-D-glucosyl phosphate + H2O = dolichol-phosphate + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl dolichol phosphoglucose phosphodiesterase activity|dolichyl-phosphate-glucose phosphodiesterase activity|Dol-P-Glc phosphodiesterase activity|dolichyl-beta-D-glucosyl-phosphate dolichylphosphohydrolase activity MetaCyc:3.1.4.48-RXN|RHEA:13857|EC:3.1.4.48 molecular_function owl:Class GO:0106264 biolink:NamedThing protein serine kinase activity (using GTP as donor) Catalysis of the reactions: GTP + L-seryl-[protein] = GDP + H(+) + O-phospho-L-seryl-[protein]. tmpzr1t_l9r_go_relaxed.owl RHEA:64020 hjd 2020-05-28T18:51:18Z molecular_function owl:Class GO:0044082 biolink:NamedThing modulation by symbiont of host small GTPase mediated signal transduction Any process in which a symbiont organism modulates the frequency, rate or extent of small GTPase mediated signal transduction in its host organism. tmpzr1t_l9r_go_relaxed.owl regulation by symbiont of host small GTPase mediated signal transduction|modulation of host small GTPase mediated signal transduction by symbiont biological_process owl:Class GO:0005112 biolink:NamedThing Notch binding Binding to a Notch (N) protein, a surface receptor. tmpzr1t_l9r_go_relaxed.owl Notch ligand|Notch receptor binding|N ligand|N binding molecular_function owl:Class GO:0102501 biolink:NamedThing D-fructuronate reductase activity Catalysis of the reaction: D-mannonate + NADP = NADPH + H+ + D-fructuronate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14368 molecular_function owl:Class GO:0022886 biolink:NamedThing channel-forming ionophore activity Enables transport of a solute across a membrane. This kind of transporter interacts much more weakly with the solute than the carrier does. It is an aqueous pore that extends across the membrane. It may change from closed to open and back. It transports faster than a carrier. It is always passive. tmpzr1t_l9r_go_relaxed.owl ionophore activity molecular_function owl:Class GO:0061202 biolink:NamedThing clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane The lipid bilayer surrounding a clathrin-sculpted gamma-aminobutyric acid transport vesicle. tmpzr1t_l9r_go_relaxed.owl clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted GABA transport vesicle membrane dph 2010-07-29T10:54:33Z cellular_component owl:Class GO:0021524 biolink:NamedThing visceral motor neuron differentiation The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033556 biolink:NamedThing dolichyl pyrophosphate Man7GlcNAc2 alpha-1,3-glucosyltransferase activity Catalysis of the addition of a glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Man(7)GlcNAc(2)-PP-Dol. tmpzr1t_l9r_go_relaxed.owl dolichyl-P-Glc:Man7GlcNAc2-PP-dolichyl glucosyltransferase activity molecular_function owl:Class GO:0140090 biolink:NamedThing membrane curvature sensor activity Preferential binding of proteins on curved membranes. The binding to curved membranes by insertion (aka wedging) to curved membranes is mediated by both the hydrophobic and hydrophilic faces of the helix of membrane curvature sensing (MCS) proteins. tmpzr1t_l9r_go_relaxed.owl pg 2017-08-19T20:37:54Z molecular_function owl:Class GO:0016250 biolink:NamedThing N-sulfoglucosamine sulfohydrolase activity Catalysis of the reaction: N-sulfo-D-glucosamine + H2O = D-glucosamine + sulfate. tmpzr1t_l9r_go_relaxed.owl sulfoglucosamine sulfamidase activity|N-sulfo-D-glucosamine sulfohydrolase activity|2-desoxy-D-glucoside-2-sulphamate sulphohydrolase (sulphamate sulphohydrolase)|heparin sulfamidase activity|sulphamidase activity|N-sulphoglucosamine sulphohydrolase activity RHEA:17881|Reactome:R-HSA-2263444|Reactome:R-HSA-2090043|MetaCyc:N-SULFOGLUCOSAMINE-SULFOHYDROLASE-RXN|EC:3.10.1.1|Reactome:R-HSA-1678708|Reactome:R-HSA-9036050 molecular_function owl:Class GO:0016826 biolink:NamedThing hydrolase activity, acting on acid sulfur-nitrogen bonds Catalysis of the hydrolysis of any acid sulfur-nitrogen bond. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid sulphur-nitrogen bonds EC:3.10.-.- molecular_function owl:Class GO:0004824 biolink:NamedThing lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). tmpzr1t_l9r_go_relaxed.owl lysyl-transfer ribonucleate synthetase activity|L-lysine-transfer RNA ligase activity|lysyl-transfer RNA synthetase activity|lysine-tRNA synthetase activity|lysyl-tRNA synthetase activity|L-lysine:tRNALys ligase (AMP-forming)|lysine translase activity EC:6.1.1.6|Reactome:R-HSA-380233|MetaCyc:LYSINE--TRNA-LIGASE-RXN|RHEA:20792|Reactome:R-HSA-380008 molecular_function owl:Class GO:0001962 biolink:NamedThing alpha-1,3-galactosyltransferase activity Catalysis of the transfer of a galactose residue from a donor molecule, such as GDP-galactose or UDP-galactose, to an oligosaccharide, forming an alpha-(1->3) linkage. tmpzr1t_l9r_go_relaxed.owl isoglobotriaosylceramide synthase molecular_function owl:Class GO:0034808 biolink:NamedThing benzo(a)pyrene 4,5-dioxygenase activity Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-cis-4,5-dihydrodiol. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r1126 molecular_function owl:Class GO:0071528 biolink:NamedThing tRNA re-export from nucleus The directed movement from the nucleus to the cytoplasm of a tRNA that was previously exported to the cytoplasm and then imported back into the nucleus. The processes of primary tRNA export and secondary export (re-export) can be distinguished because in organisms in which tRNA splicing occurs in the cytoplasm, the export of a mature tRNA must occur by re-export. tmpzr1t_l9r_go_relaxed.owl tRNA reexport from nucleus mah 2010-01-07T04:17:05Z biological_process owl:Class GO:0060361 biolink:NamedThing flight Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0014814 biolink:NamedThing axon regeneration at neuromuscular junction The regrowth of axons following their loss or damage at the neuromuscular junction. Motor axons regenerate after injury and they form neuro-muscular junctions with skeletal myofibers similar to normal ones. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051911 biolink:NamedThing Methanosarcina-phenazine hydrogenase activity Catalysis of the reaction: H2 + 2-(2,3-dihydropentaprenyloxy)phenazine = 2-dihydropentaprenyloxyphenazine. tmpzr1t_l9r_go_relaxed.owl methylviologen-reducing hydrogenase activity|hydrogen:2-(2,3-dihydropentaprenyloxy)phenazine oxidoreductase activity|coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity|methanophenazine hydrogenase activity RHEA:24436|MetaCyc:RXN-7733|EC:1.12.98.3 molecular_function owl:Class GO:0008766 biolink:NamedThing UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine. tmpzr1t_l9r_go_relaxed.owl EC:6.3.2.10|RHEA:28374|MetaCyc:UDP-NACMURALGLDAPAALIG-RXN Note that EC:6.3.2.15 was deleted from EC as the reaction is performed by UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (EC:6.3.2.10). molecular_function owl:Class GO:0072629 biolink:NamedThing interleukin-28B production The appearance of interleukin-28B due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IL28B production|interleukin-28B secretion|interferon lambda 3 production|IL-28B production Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. GO:0072630 biological_process owl:Class GO:1903699 biolink:NamedThing tarsal gland development The process whose specific outcome is the progression of a tarsal gland over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl tarsoconjunctival gland development|glandula tarsales development|gland of Meibom development|Meibomian gland development cls 2014-12-03T11:47:07Z biological_process owl:Class GO:0034291 biolink:NamedThing canonical holin activity A compound function consisting of the regulated formation of a pore via oligomerisation of an existing pool of subunits in the plasma membrane. The resulting channel activity directly allows release of a fully-folded phage-encoded endolysin (murein-degradase) from the cell. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102705 biolink:NamedThing serine decarboxylase activity Catalysis of the reaction: H+ + L-serine <=> ethanolaminium(1+) + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl RHEA:45824|MetaCyc:RXN-5641 molecular_function owl:Class GO:0019126 biolink:NamedThing peptidyl-serine racemization The racemization of peptidyl-serine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0195 GO:0018372|GO:0018090 biological_process owl:Class GO:0009115 biolink:NamedThing xanthine catabolic process The chemical reactions and pathways resulting in the breakdown of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. tmpzr1t_l9r_go_relaxed.owl xanthine catabolism|xanthine oxidation|xanthine breakdown|xanthine degradation GO:0006151 biological_process owl:Class GO:0003262 biolink:NamedThing endocardial progenitor cell migration to the midline involved in heart field formation The orderly movement of an endocardial progenitor cell toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into endocardial cells of the heart. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-15T02:00:41Z biological_process owl:Class GO:0005540 biolink:NamedThing hyaluronic acid binding Binding to hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine. tmpzr1t_l9r_go_relaxed.owl hyaluronan binding molecular_function owl:Class GO:0008083 biolink:NamedThing growth factor activity The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation. tmpzr1t_l9r_go_relaxed.owl Also consider annotating to 'receptor agonist activity ; GO:0048018'. molecular_function owl:Class GO:0050393 biolink:NamedThing vinylacetyl-CoA delta-isomerase activity Catalysis of the reaction: vinylacetyl-CoA = crotonoyl-CoA. tmpzr1t_l9r_go_relaxed.owl vinylacetyl coenzyme A isomerase activity|delta3-cis-delta2-trans-enoyl-CoA isomerase|vinylacetyl-CoA D-isomerase activity|vinylacetyl-CoA delta3-delta2-isomerase activity|vinylacetyl coenzyme A delta-isomerase activity EC:5.3.3.3|KEGG_REACTION:R03031|MetaCyc:VINYLACETYL-COA-DELTA-ISOMERASE-RXN|RHEA:10572 molecular_function owl:Class GO:0050834 biolink:NamedThing molybdenum incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide The incorporation of molybdenum into a protein by L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0355 biological_process owl:Class GO:0010306 biolink:NamedThing rhamnogalacturonan II biosynthetic process The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0070531 biolink:NamedThing BRCA1-A complex A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0018773 biolink:NamedThing acetylpyruvate hydrolase activity Catalysis of the reaction: acetylpyruvate + H(2)O = acetate + H(+) + pyruvate. tmpzr1t_l9r_go_relaxed.owl 2,4-dioxopentanoate acetylhydrolase activity MetaCyc:ACETYLPYRUVATE-HYDROLASE-RXN|KEGG_REACTION:R00324|RHEA:16097|UM-BBD_reactionID:r0095|EC:3.7.1.6 molecular_function owl:Class GO:0097182 biolink:NamedThing protein C inhibitor-coagulation factor Xa complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor Xa (F10); formation of the complex inhibits the serine protease activity of coagulation factor Xa. tmpzr1t_l9r_go_relaxed.owl SERPINA5-coagulation factor Xa complex|serpin A5-coagulation factor Xa complex|PCI-coagulation factor Xa complex|plasma serine protease inhibitor-coagulation factor Xa complex pr 2011-10-16T09:01:29Z cellular_component owl:Class GO:0043920 biolink:NamedThing aminopropylagmatine ureohydrolase activity Catalysis of the reaction: N1-aminopropylagmatine + H2O = spermidine + urea. tmpzr1t_l9r_go_relaxed.owl EC:3.5.3.24|RHEA:35827 molecular_function owl:Class GO:0071087 biolink:NamedThing alpha11-beta1 integrin-collagen type I complex A protein complex that consists of an alpha11-beta1 integrin complex bound to a type I collagen. tmpzr1t_l9r_go_relaxed.owl ITGA11-ITGB1-COL1A1 complex mah 2009-11-06T04:45:27Z cellular_component owl:Class GO:1990076 biolink:NamedThing cell wall polysaccharide catabolic process involved in abscission Any cell wall polysaccharide catabolic process that is involved in abscission. tmpzr1t_l9r_go_relaxed.owl dhl 2013-04-25T16:29:43Z biological_process owl:Class GO:0047152 biolink:NamedThing methanol-5-hydroxybenzimidazolylcobamide Co-methyltransferase activity Catalysis of the reaction: 5-hydroxybenzimidazolylcobamide + methanol = H2O + Co-methyl-Co-5-hydroxybenzimidazolylcob(I)amide. tmpzr1t_l9r_go_relaxed.owl MtaB|MT1|MT 1|methanol:corrinoid methyltransferase activity|methanol:5-hydroxybenzimidazolylcobamide Co-methyltransferase activity|methanol:5-hydroxybenzimidazolylcobamide methyltransferase activity|methanol-corrinoid protein Co-methyltransferase|methanol cobalamin methyltransferase activity|methyltransferase 1 RHEA:45204|MetaCyc:2.1.1.90-RXN|EC:2.1.1.90 This function is the first step in the pathway of methanogenesis from methanol. GO:1990087 molecular_function owl:Class GO:0102891 biolink:NamedThing 2'4'6'34-pentahydroxychalcone 4'-O-glucosyltransferase activity Catalysis of the reaction: UDP-alpha-D-glucose + 2',3,4,4',6'-pentahydroxychalcone <=> H+ + 2',3,4,4',6'-pentahydroxychalcone 4'-O-beta-D-glucoside + UDP. tmpzr1t_l9r_go_relaxed.owl RHEA:34295|EC:2.4.1.286|MetaCyc:RXN-8455 molecular_function owl:Class GO:0016544 biolink:NamedThing male courtship behavior, tapping to detect pheromone The process during courtship where the male insect taps the female with his frontal leg. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl male courtship behavior, tapping|male courtship behaviour, tapping to detect pheromone|male courtship behaviour, tapping biological_process owl:Class GO:0140260 biolink:NamedThing mitochondrial proton-transporting ATP synthase complex binding Binding to a mitochondrial proton-transporting ATP synthase complex. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-10T19:38:26Z molecular_function owl:Class GO:0047889 biolink:NamedThing ferredoxin-nitrate reductase activity Catalysis of the reaction: nitrite + H2O + 2 oxidized ferredoxin = nitrate + 2 reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl assimilatory nitrate reductase activity|nitrate (ferredoxin) reductase activity|nitrite:ferredoxin oxidoreductase activity|assimilatory ferredoxin-nitrate reductase activity MetaCyc:1.7.7.2-RXN|RHEA:21828|EC:1.7.7.2 molecular_function owl:Class GO:0031158 biolink:NamedThing negative regulation of aggregate size involved in sorocarp development Any process that decreases the size of the aggregate formed during sorocarp formation. tmpzr1t_l9r_go_relaxed.owl down-regulation of aggregate size|down regulation of aggregate size|inhibition of aggregate size|downregulation of aggregate size biological_process owl:Class GO:0047803 biolink:NamedThing cysteine lyase activity Catalysis of the reaction: L-cysteine + sulfite = L-cysteate + sulfide. tmpzr1t_l9r_go_relaxed.owl L-cysteine hydrogen-sulfide-lyase (adding sulfite)|L-cysteine hydrogen-sulfide-lyase (adding sulfite; L-cysteate-forming)|cysteine (sulfite) lyase activity EC:4.4.1.10|MetaCyc:CYSTEINE-LYASE-RXN|RHEA:20916 molecular_function owl:Class GO:0047272 biolink:NamedThing phosphopolyprenol glucosyltransferase activity Catalysis of the reaction: polyprenyl phosphate + UDP-D-glucose = polyprenylphosphate-glucose + UDP. tmpzr1t_l9r_go_relaxed.owl uridine diphosphoglucose-polyprenol monophosphate glucosyltransferase activity|UDPglucose:phosphopolyprenol D-glucosyltransferase activity|UDPglucose:polyprenol monophosphate glucosyltransferase activity|UDP-glucose:phosphopolyprenol D-glucosyltransferase activity MetaCyc:2.4.1.78-RXN|EC:2.4.1.78 molecular_function owl:Class GO:0008813 biolink:NamedThing chorismate lyase activity Catalysis of the reaction: chorismate = 4-hydroxybenzoate + pyruvate. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybenzoate synthetase activity|CPL|chorismate pyruvate-lyase (4-hydroxybenzoate-forming) activity|chorismate pyruvate lyase activity|UbiC|CL MetaCyc:CHORPYRLY-RXN|EC:4.1.3.40|RHEA:16505|KEGG_REACTION:R01302 molecular_function owl:Class GO:0044310 biolink:NamedThing osmiophilic body A membrane-bounded vesicle found predominantly in Plasmodium female gametocytes, that becomes progressively more abundant as the gametocyte reaches full maturity. These vesicles lie beneath the subpellicular membrane of the gametocyte, and the release of their contents into the parasitophorous vacuole has been postulated to aid in the escape of gametocytes from the erythrocyte after ingestion by the mosquito. tmpzr1t_l9r_go_relaxed.owl jl 2010-02-18T03:18:32Z cellular_component owl:Class GO:0090557 biolink:NamedThing establishment of endothelial intestinal barrier The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition. tmpzr1t_l9r_go_relaxed.owl tb 2013-10-29T15:08:27Z biological_process owl:Class GO:0033769 biolink:NamedThing glyceollin synthase activity Catalysis of the reactions: 2-dimethylallyl-(6aS,11aS)-3,6a,9-trihydroxypterocarpan + NADPH + H+ + O2 = glyceollin + NADP+ + 2 H2O, and 4-dimethylallyl-(6aS,11aS)-3,6a,9-trihydroxypterocarpan + NADPH + H+ + O2 = glyceollin + NADP+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl 2-(or 4-)dimethylallyl-(6aS,11aS)-3,6a,9-trihydroxypterocarpan,NADPH:oxygen oxidoreductase (cyclizing) activity|dimethylallyl-3,6a,9-trihydroxypterocarpan cyclase activity EC:1.14.13.85|MetaCyc:2.5.1.36-RXN molecular_function owl:Class GO:0033712 biolink:NamedThing 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) activity Catalysis of the reaction: 1,5-anhydro-D-mannitol + NADP(+) = 1,5-anhydro-D-fructose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl AFR|1,5-anhydro-D-mannitol:NADP+ oxidoreductase activity MetaCyc:1.1.1.292-RXN|RHEA:24208|EC:1.1.1.292|KEGG_REACTION:R08194 molecular_function owl:Class GO:0051449 biolink:NamedThing thyrotropin-releasing hormone binding Binding to thyrotropin-releasing hormone, a tripeptide hormone that stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary and it is produced by the hypothalamus and travels across the median eminence to the pituitary via the pituitary portal system. tmpzr1t_l9r_go_relaxed.owl thyrotropin releasing hormone binding molecular_function owl:Class GO:0052638 biolink:NamedThing indole-3-butyrate beta-glucosyltransferase activity Catalysis of the reaction: indole-3-butyrate + UDP-D-glucose = indole-3-butyryl-beta-1-D-glucose + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:indole-3-butyrate beta-D-glucosyltransferase activity|UDP-glucose:indol-3-ylbutyrate glucosyl-transferase activity|indole-3-butyric acid glucosyltransferase activity|indol-3-ylbutyrylglucose synthase activity|UDPG-indol-3-ylbutyryl glucosyl transferase activity|IBAGlu synthase activity|UDP-glucose:(indol-3-yl)butyrate beta-D-glucosyltransferase activity|IBA-glucose synthase activity|uridine diphosphoglucose-indolebutyrate glucosyltransferase activity|UDP-glucose:indol-3-ylbutyrate glucosyltransferase activity|IBA-Glc synthetase activity RHEA:62708|MetaCyc:RXN-11655 molecular_function owl:Class GO:0018397 biolink:NamedThing peptidyl-phenylalanine bromination to L-2'-bromophenylalanine The bromination of peptidyl-phenylalanine to form L-2'-bromophenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0174 biological_process owl:Class GO:0010066 biolink:NamedThing ground meristem histogenesis The formation of the primary meristem or meristematic tissue that gives rise to the ground tissues. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052642 biolink:NamedThing lysophosphatidic acid phosphatase activity Catalysis of the reaction: lysophosphatidic acid + H2O = phosphate + monoacylglycerol. tmpzr1t_l9r_go_relaxed.owl lysophosphatidate phosphatase activity|LPA phosphatase activity Reactome:R-HSA-8878654 molecular_function owl:Class GO:0018764 biolink:NamedThing N-isopropylammelide isopropylaminohydrolase activity Catalysis of the reaction: N-isopropylammelide + H2O = cyanuric acid + isopropylamine. tmpzr1t_l9r_go_relaxed.owl AtzC MetaCyc:R123-RXN|RHEA:23608|UM-BBD_enzymeID:e0086|EC:3.5.4.42 molecular_function owl:Class GO:0050554 biolink:NamedThing abietadiene synthase activity Catalysis of the reaction: (+)-copalyl diphosphate = (-)-abietadiene + diphosphate. tmpzr1t_l9r_go_relaxed.owl abietadiene cyclase activity|copalyl-diphosphate diphosphate-lyase (cyclizing)|(+)-copalyl-diphosphate diphosphate-lyase (cyclizing, (-)-abietadiene-forming) EC:4.2.3.18|KEGG_REACTION:R06301|MetaCyc:4.2.3.18-RXN|RHEA:13873 molecular_function owl:Class GO:0102354 biolink:NamedThing 11-cis-retinol dehydrogenase activity Catalysis of the reaction: 11-cis-retinol + NADP = 11-cis-retinal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:54912|MetaCyc:RXN-13363 molecular_function owl:Class GO:0010190 biolink:NamedThing cytochrome b6f complex assembly Formation of cytochrome b6f complex, a complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen, by the aggregation, arrangement and bonding together of its constituents. tmpzr1t_l9r_go_relaxed.owl cytochrome b6f complex biogenesis biological_process owl:Class GO:0035302 biolink:NamedThing ecdysteroid 25-hydroxylase activity Catalysis of the hydroxylation of an ecdysteroid at carbon position 25. Ecdysteroids are a group of polyhydroxylated ketosteroids which initiate post-embryonic development, particularly metamorphosis, in insects and other arthropods. tmpzr1t_l9r_go_relaxed.owl Note that in the ecdysteroidogenic pathway, this activity catalyzes the conversion of 2,22,25-trideoxyecdysone (3-beta,5-beta-ketodiol) to 2,22-dideoxyecdysone (3-beta,5-beta-ketotriol). molecular_function owl:Class GO:0034973 biolink:NamedThing Sid2-Mob1 complex A protein complex that contains a protein kinase (Sid2 in S. pombe) and its regulatory subunit (Mob1). The Sid2p-Mob1p kinase complex is a component of the septation initiation network in fission yeast (called the mitotic exit network in S. cerevisiae) and is required for cytokinesis. The analogous complex in S. cerevisiae is called Dbf2p-Mob1p complex. tmpzr1t_l9r_go_relaxed.owl Sid2p-Mob1p complex|Sid2-Mob1 kinase complex|Dbf2p-Mob1p complex cellular_component owl:Class GO:0097719 biolink:NamedThing neural tissue regeneration The regrowth of neural tissue following its loss or destruction. tmpzr1t_l9r_go_relaxed.owl neuroregeneration pr 2016-08-25T13:14:27Z biological_process owl:Class GO:0018590 biolink:NamedThing methylsilanetriol hydroxylase activity Catalysis of the reaction: methylsilanetriol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylsilanetriol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0640 molecular_function owl:Class GO:0004991 biolink:NamedThing parathyroid hormone receptor activity Combining with parathyroid hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0052678 biolink:NamedThing levopimaradiene synthase activity Catalysis of the reaction: (+)-copalyl diphosphate = abieta-8(14),12-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-copalyl-diphosphate diphosphate-lyase [ent-abieta-8(14),12-diene-forming] activity MetaCyc:4.2.3.32-RXN|EC:4.2.3.32|RHEA:25548|KEGG_REACTION:R06302 molecular_function owl:Class GO:1904593 biolink:NamedThing prostaglandin binding Binding to prostaglandin. tmpzr1t_l9r_go_relaxed.owl sl 2015-08-21T18:53:31Z molecular_function owl:Class GO:0031432 biolink:NamedThing titin binding Binding to titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0043756 biolink:NamedThing adenosylcobinamide hydrolase activity Catalysis of the reaction: adenosylcobinamide + H(2)O = (R)-1-aminopropan-2-ol + adenosylcobyrate. tmpzr1t_l9r_go_relaxed.owl adenosylcobinamide amidohydrolase activity|AdoCbi hydrolase activity|CbiZ|AdoCbi amidohydrolase activity EC:3.5.1.90|RHEA:23504|KEGG_REACTION:R05226|MetaCyc:R346-RXN molecular_function owl:Class GO:0070984 biolink:NamedThing SET domain binding Binding to a SET domain of a protein. SET domains are named after three Drosophila proteins that contain this domain: Su(var), E(z) and trithorax. SET domains are associated with histone lysine methylation. tmpzr1t_l9r_go_relaxed.owl SET binding mah 2009-10-27T04:09:28Z molecular_function owl:Class GO:0039698 biolink:NamedThing polyadenylation of viral mRNA by polymerase stuttering Polyadenylation of viral mRNA through a polymerase stuttering mechanism. The stop signal present at the end of each gene comprises a stretch of uridine on which the viral polymerase acquires a stuttering behavior: after each adenine inserted, the polymerase moves back one nucleotide along with the mRNA. It resumes transcription adding a new adenine, then again moves back, thereby producing a polyA tail. tmpzr1t_l9r_go_relaxed.owl polyA stuttering VZ:1916 bf 2013-10-28T14:54:07Z biological_process owl:Class GO:0031471 biolink:NamedThing ethanolamine degradation polyhedral organelle An organelle found in bacteria consisting of a proteinaceous coat containing enzymes for the degradation of ethanolamine whose purpose is the protection of the rest of the cell from the toxic acetaldehyde product of the enzyme ethanolamine ammonia lyase. tmpzr1t_l9r_go_relaxed.owl ethanolamine metabolosome cellular_component owl:Class GO:0009675 biolink:NamedThing high-affinity sulfate:proton symporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. tmpzr1t_l9r_go_relaxed.owl high affinity sulfate:hydrogen symporter activity|high affinity sulphate:hydrogen symporter activity|high affinity sulfate:proton symporter activity molecular_function owl:Class GO:0005611 biolink:NamedThing laminin-6 complex A laminin complex composed of alpha3, beta1 and gamma1 polypeptide chains. tmpzr1t_l9r_go_relaxed.owl laminin-6A complex|laminin-311 complex cellular_component owl:Class GO:0102819 biolink:NamedThing bixin aldehyde dehydrogenase activity Catalysis of the reaction: bixin aldehyde + O2 + NAD <=> norbixin + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8237 molecular_function owl:Class GO:0009379 biolink:NamedThing Holliday junction helicase complex A DNA helicase complex found at Holliday junctions where the helicase activity is involved in the migration of the junction branch point. The best-characterized example is the E. coli RuvAB complex, in which a hexamer of RuvB subunits possesses helicase activity that is modulated by association with RuvA. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0000971 biolink:NamedThing tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate A tRNA exon ligation process in which the splice junction phosphate is derived from the 2',3' cyclic phosphate at the 3'-end of the 5'-exon. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in wheat, Chlamydomonas, and vertebrate species including humans. tmpzr1t_l9r_go_relaxed.owl krc 2009-04-28T10:36:17Z biological_process owl:Class GO:0018421 biolink:NamedThing UDP-N-acetylglucosamine:serine-protein N-acetylglucosamine-1-phosphotransferase activity Catalysis of the transfer of N-acetylglucosamine-1-phosphate to a serine residue in a protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047246 biolink:NamedThing luteolin-7-O-glucuronide 7-O-glucuronosyltransferase activity Catalysis of the reaction: luteolin 7-O-beta-D-glucosiduronate + UDP-alpha-D-glucuronate = H(+) + luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucuronate:luteolin 7-O-glucuronide-glucuronosyltransferase activity|UDP-glucuronate:luteolin-7-O-beta-D-glucuronide 2''-O-glucuronosyltransferase activity|luteolin-7-O-glucuronide 2''-O-glucuronosyltransferase activity|LMT activity|uridine diphosphoglucuronate-luteolin 7-O-glucuronide glucuronosyltransferase activity RHEA:14149|EC:2.4.1.190|KEGG_REACTION:R06827|MetaCyc:2.4.1.190-RXN molecular_function owl:Class GO:0008959 biolink:NamedThing phosphate acetyltransferase activity Catalysis of the reaction: acetyl-CoA + phosphate = CoA + acetyl phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoacylase activity|acetyl-CoA:phosphate acetyltransferase activity|PTA|phosphotransacetylase activity RHEA:19521|EC:2.3.1.8|MetaCyc:PHOSACETYLTRANS-RXN molecular_function owl:Class GO:0033833 biolink:NamedThing hydroxymethylfurfural reductase (NADH) activity Catalysis of the reaction: 5-hydroxymethylfurfural + NADH + H+ = 2,5-bis-hydroxymethylfuran + NAD+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-10738 molecular_function owl:Class GO:0019420 biolink:NamedThing dissimilatory sulfate reduction The reduction of sulfate to hydrogen sulfide, which acts as a terminal electron acceptor. Sulfate is activated to adenosine-phosphosulfate (APS) which is then reduced to sulfite, which is in turn reduced to hydrogen sulfide. tmpzr1t_l9r_go_relaxed.owl dissimilatory sulphate reduction MetaCyc:DISSULFRED-PWY biological_process owl:Class GO:0034673 biolink:NamedThing inhibin-betaglycan-ActRII complex A protein complex that consists of inhibin, type III transforming growth factor beta receptor (also known as betaglycan), and the type II activin receptor ActRII. The complex is thought to negatively regulate the activity of activin B. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042973 biolink:NamedThing glucan endo-1,3-beta-D-glucosidase activity Catalysis of the hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl endo-(1,3)-beta-D-glucanase activity|oligo-1,3-glucosidase activity|1,3-beta-D-glucan glucanohydrolase activity|endo-1,3-beta-D-glucanase|laminaranase activity|(1->3)-beta-glucan 3-glucanohydrolase activity|1,3-beta-D-glucan 3-glucanohydrolase activity|beta-1,3-glucanase|endo-(1->3)-beta-D-glucanase activity|callase activity|endo-1,3-beta-glucanase activity|kitalase activity|laminarinase activity|endo-1,3-beta-glucosidase activity|(1->3)-beta-glucan endohydrolase activity EC:3.2.1.39|MetaCyc:3.2.1.39-RXN molecular_function owl:Class GO:0001326 biolink:NamedThing replication of extrachromosomal circular DNA Replication of circular DNA following excision from the chromosome; replication of extrachromosomal circular DNA generally occurs independently of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061581 biolink:NamedThing corneal epithelial cell migration The orderly movement of a corneal epithelial cell from one site to another, often during the development of a multicellular organism. tmpzr1t_l9r_go_relaxed.owl dph 2013-12-23T07:28:29Z biological_process owl:Class GO:0034801 biolink:NamedThing 2,4-dinitrocyclohexanone hydrolase activity Catalysis of the reaction: 2,4-dinitrocyclohexanone + OH- = 4,6-dinitrohexanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1069 molecular_function owl:Class GO:0018449 biolink:NamedThing 1-phenylethanol dehydrogenase activity Catalysis of the reaction: (S)-1-phenylethanol = acetophenone + H2. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0032 molecular_function owl:Class GO:0031696 biolink:NamedThing alpha-2C adrenergic receptor binding Binding to an alpha-2C adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl alpha-2C adrenergic receptor ligand molecular_function owl:Class GO:0003942 biolink:NamedThing N-acetyl-gamma-glutamyl-phosphate reductase activity Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl N-acetylglutamic gamma-semialdehyde dehydrogenase activity|N-acetyl-glutamate semialdehyde dehydrogenase activity|NAGSA dehydrogenase activity|N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)|N-acetylglutamate 5-semialdehyde dehydrogenase activity|reductase, acetyl-gamma-glutamyl phosphate|N-acetyl-L-glutamate gamma-semialdehyde:NADP oxidoreductase (phosphorylating) MetaCyc:N-ACETYLGLUTPREDUCT-RXN|EC:1.2.1.38|RHEA:21588 molecular_function owl:Class GO:0080056 biolink:NamedThing petal vascular tissue pattern formation Vascular tissue pattern formation as it occurs in the petal of vascular plants. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-13T02:25:01Z biological_process owl:Class GO:0036199 biolink:NamedThing cholest-4-en-3-one 26-monooxygenase activity Catalysis of the reaction: cholest-4-en-3-one + NADH + H+ + O2 = 26-hydroxycholest-4-en-3-one + NAD+ + H2O. This reaction involves the hydroxylation of the C26 carbon, followed by oxidation of the alcohol to the carboxylic acid via the aldehyde intermediate. tmpzr1t_l9r_go_relaxed.owl RHEA:51564|KEGG_REACTION:R09859|EC:1.14.15.29 bf 2012-04-20T02:03:05Z molecular_function owl:Class GO:0098536 biolink:NamedThing deuterosome A spherical, electron dense, cytoplasmic structure that is involved in de novo assembly of centrioles. tmpzr1t_l9r_go_relaxed.owl dos 2013-10-22T16:21:19Z cellular_component owl:Class GO:0031800 biolink:NamedThing type 3 metabotropic glutamate receptor binding Binding to a type 3 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 3 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0000907 biolink:NamedThing sulfonate dioxygenase activity Catalysis of the reaction: sulfonate + 2-oxoglutarate + O2 = sulfite + aminoacetaldehyde + succinate + CO2. tmpzr1t_l9r_go_relaxed.owl sulfonate/alpha-ketoglutarate dioxygenase activity|sulphonate dioxygenase activity molecular_function owl:Class GO:0047067 biolink:NamedThing hydrogen:quinone oxidoreductase activity Catalysis of the reaction: H(2) + menaquinone = reduced menaquinone. tmpzr1t_l9r_go_relaxed.owl hydrogen:menaquinone oxidoreductase activity|quinone-reactive Ni/Fe-hydrogenase activity|hydrogen-ubiquinone oxidoreductase activity|membrane-bound hydrogenase activity RHEA:18641|MetaCyc:1.12.5.1-RXN|EC:1.12.5.1|KEGG_REACTION:R02965 molecular_function owl:Class GO:0047837 biolink:NamedThing D-xylose 1-dehydrogenase (NADP+) activity Catalysis of the reaction: D-xylose + NADP(+) = D-xylono-1,5-lactone + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl D-xylose-NADP dehydrogenase activity|D-xylose (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity|D-xylose:NADP+ 1-oxidoreductase activity|D-xylose:NADP+ oxidoreductase activity MetaCyc:D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN|EC:1.1.1.179|RHEA:22000|KEGG_REACTION:R01430 molecular_function owl:Class GO:1904852 biolink:NamedThing trimethylamine-N-oxide reductase (cytochrome c) complex A protein complex which is capable of trimethylamine-N-oxide reductase (cytochrome c) activity. tmpzr1t_l9r_go_relaxed.owl An example of this is TorA in E. coli (UniProt ID P33225) in PMID:11056172 (inferred from direct assay). bhm 2015-12-14T09:11:10Z cellular_component owl:Class GO:0106076 biolink:NamedThing peptide-lysine-N-succinyltransferase activity Catalysis of the reaction: succinyl-CoA + lysine in peptide = CoA + N-succinyl-lysine-peptide. tmpzr1t_l9r_go_relaxed.owl hjd 2017-12-15T18:25:16Z molecular_function owl:Class GO:0050215 biolink:NamedThing propanediol dehydratase activity Catalysis of the reaction: propane-1,2-diol = H(2)O + propanal. tmpzr1t_l9r_go_relaxed.owl 1,2-propanediol dehydratase activity|coenzyme B12-dependent diol dehydrase activity|meso-2,3-butanediol dehydrase activity|propane-1,2-diol hydro-lyase activity|DL-1,2-propanediol hydro-lyase activity|propanediol dehydrase activity|propane-1,2-diol hydro-lyase (propanal-forming)|dioldehydratase activity|diol dehydratase activity|adenosylcobalamin-dependent diol dehydratase activity|diol dehydrase activity MetaCyc:PROPANEDIOL-DEHYDRATASE-RXN|EC:4.2.1.28|KEGG_REACTION:R02376|RHEA:14569 molecular_function owl:Class GO:0018447 biolink:NamedThing chloral hydrate dehydrogenase activity Catalysis of the reactions: chloral hydrate = 3 H+ + 2 e- + trichloroacetate, and chloral hydrate + H2 = H2O + trichloroethanol. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0229 molecular_function owl:Class GO:0031769 biolink:NamedThing glucagon receptor binding Binding to a glucagon receptor. tmpzr1t_l9r_go_relaxed.owl glucagon receptor ligand molecular_function owl:Class GO:0102007 biolink:NamedThing acyl-L-homoserine-lactone lactonohydrolase activity Catalysis of the reaction: H2O + an N-acyl-L-homoserine lactone <=> H+ + an N-acyl-L-homoserine. tmpzr1t_l9r_go_relaxed.owl EC:3.1.1.81|Reactome:R-HSA-8932633|MetaCyc:3.1.1.81-RXN|RHEA:22576 molecular_function owl:Class GO:0004832 biolink:NamedThing valine-tRNA ligase activity Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl valine translase activity|valyl-transfer ribonucleate synthetase activity|valyl-transfer ribonucleic acid synthetase activity|L-valine:tRNAVal ligase (AMP-forming)|valyl-transfer RNA synthetase activity|valyl-tRNA synthetase activity|valine transfer ribonucleate ligase activity EC:6.1.1.9|Reactome:R-HSA-380042|MetaCyc:VALINE--TRNA-LIGASE-RXN|RHEA:10704|KEGG_REACTION:R03665|Reactome:R-HSA-380199 molecular_function owl:Class GO:0039623 biolink:NamedThing T=25 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=25 symmetry. The T=25 capsid is composed of 12 pentameric and 240 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:810 bf 2012-07-18T02:21:43Z cellular_component owl:Class GO:0098873 biolink:NamedThing neuronal action potential back-propagation Propagation of an action potential in a neuron, from its site of initiation (typically the axon hillock) towards the soma. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005144 biolink:NamedThing interleukin-13 receptor binding Binding to an interleukin-13 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-13 receptor ligand|IL-13 molecular_function owl:Class GO:0009044 biolink:NamedThing xylan 1,4-beta-xylosidase activity Catalysis of the hydrolysis of (1->4)-beta-D-xylans so as to remove successive D-xylose residues from the non-reducing termini. tmpzr1t_l9r_go_relaxed.owl beta-D-xylopyranosidase activity|exo-1,4-xylosidase activity|xylobiase activity|exo-1,4-beta-D-xylosidase activity|1,4-beta-D-xylan xylohydrolase activity|exo-1,4-beta-xylosidase activity|beta-xylosidase activity MetaCyc:3.2.1.37-RXN|EC:3.2.1.37 molecular_function owl:Class GO:0018829 biolink:NamedThing 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane dehydrochlorinase activity Catalysis of the reaction: 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane = HCl + 1-chloro-2,2-bis(4-chlorophenyl)ethene. 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane is also known as DDD; 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU. tmpzr1t_l9r_go_relaxed.owl DDD dehydrochlorinase activity EC:4.5.1.-|UM-BBD_reactionID:r0513 molecular_function owl:Class GO:0097663 biolink:NamedThing SCF-Dia2/Pof3 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Dia2 in S. cerevisiae (Pof3 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:26:44Z cellular_component owl:Class GO:0036358 biolink:NamedThing lipoteichoic acid D-alanylation The formation of a D-alanyl ester of lipoteichoic acid by transfer of D-Ala onto a membrane-associated lipoteichoic acid (LTA). tmpzr1t_l9r_go_relaxed.owl D-alanyl lipoteichoic acid formation|LTA D-alanylation|D-alanyl LTA formation bf 2012-09-19T15:09:05Z biological_process owl:Class GO:0102166 biolink:NamedThing [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine O-N-acetyl-alpha-D-glucosaminase activity Catalysis of the reaction: H2O + an N-acetyl-alpha-D-glucosaminyl-L-threonine-[glycoprotein] <=> N-acetyl-alpha-D-glucosaminide + a [protein]-L-threonine. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.169|RHEA:48892|MetaCyc:RXN-11891 molecular_function owl:Class GO:0035552 biolink:NamedThing oxidative single-stranded DNA demethylation Removal of the methyl group from one or more nucleotides within a single-stranded DNA molecule involving the oxidation (i.e. electron loss) of one or more atoms. tmpzr1t_l9r_go_relaxed.owl oxidative ssDNA demethylation bf 2010-05-14T11:03:55Z biological_process owl:Class GO:0033453 biolink:NamedThing GCU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a GCU codon. tmpzr1t_l9r_go_relaxed.owl GCT codon-amino acid adaptor activity|alanine tRNA Note that in the standard genetic code, GCT codes for alanine. molecular_function owl:Class GO:0004749 biolink:NamedThing ribose phosphate diphosphokinase activity Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl PRPP synthetase activity|phosphoribosyl-diphosphate synthetase activity|ribose-phosphate pyrophosphokinase activity|5-phosphoribosyl-1-pyrophosphate synthetase activity|ATP:D-ribose-5-phosphate diphosphotransferase activity|phosphoribosyl pyrophosphate synthetase activity|5-phosphoribose pyrophosphorylase activity|PP-ribose P synthetase activity|phosphoribosylpyrophosphate synthase activity|PPRibP synthetase activity|5-phosphoribosyl-alpha-1-pyrophosphate synthetase activity|phosphoribosyl diphosphate synthetase activity|pyrophosphoribosylphosphate synthetase activity|ribose-5-phosphate pyrophosphokinase activity|ribose-phosphate diphosphokinase activity|phosphoribosylpyrophosphate synthetase activity|ribophosphate pyrophosphokinase activity MetaCyc:PWY0-662|MetaCyc:PRPPSYN-RXN|Reactome:R-HSA-73580|RHEA:15609|Reactome:R-HSA-111215|EC:2.7.6.1|KEGG_REACTION:R01049 molecular_function owl:Class GO:0097304 biolink:NamedThing lipoprotein biosynthetic process via signal peptide cleavage The chemical reactions and pathways by which signal peptide cleavage leads to formation of a water-soluble protein-lipid complex. tmpzr1t_l9r_go_relaxed.owl lipoprotein biosynthesis (signal peptide cleavage) pr 2012-05-15T01:05:17Z biological_process owl:Class GO:0047474 biolink:NamedThing long-chain fatty acid luciferin component ligase activity Catalysis of the reaction: protein + an acid + ATP = an acyl-protein thiolester + diphosphate + AMP. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. tmpzr1t_l9r_go_relaxed.owl long-chain-fatty-acid:protein ligase (AMP-forming)|long-chain-fatty-acid-luciferin-component ligase activity|long-chain-fatty-acid luciferin component ligase activity|acyl-protein synthetase activity MetaCyc:6.2.1.19-RXN|RHEA:20101|EC:6.2.1.19 molecular_function owl:Class GO:0120268 biolink:NamedThing paraflagellar rod assembly The aggregation, arrangement and bonding together of a set of components to form a paraflagellar rod, a large lattice-like axial structure found in some flagellated protists which extends alongside the axoneme. tmpzr1t_l9r_go_relaxed.owl paraflagellar rod formation|PFR assembly|paraflagellar rod biogenesis https://github.com/geneontology/go-ontology/issues/20053 krc 2020-09-30T17:46:14Z biological_process owl:Class GO:0061504 biolink:NamedThing cyclic threonylcarbamoyladenosine biosynthetic process The chemical reactions and pathways resulting in the formation of cyclic threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules. tmpzr1t_l9r_go_relaxed.owl dph 2013-01-22T14:25:00Z biological_process owl:Class GO:0047299 biolink:NamedThing tryptophan-phenylpyruvate transaminase activity Catalysis of the reaction: keto-phenylpyruvate + L-tryptophan = 3-(indol-3-yl)pyruvate + L-phenylalanine. tmpzr1t_l9r_go_relaxed.owl L-tryptophan-alpha-ketoisocaproate aminotransferase activity|tryptophan-phenylpyruvate aminotransferase activity|tryptophan--phenylpyruvate aminotransferase activity|L-tryptophan:phenylpyruvate aminotransferase activity RHEA:13741|EC:2.6.1.28|MetaCyc:2.6.1.28-RXN|KEGG_REACTION:R01376 molecular_function owl:Class GO:0018568 biolink:NamedThing 3,4-dihydroxyphenanthrene dioxygenase activity Catalysis of the reaction: 3,4-dihydroxyphenanthrene + O2 = H+ + 2-hydroxy-2 H-benzo[h]chromene-2-carboxylate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0501 molecular_function owl:Class GO:0071339 biolink:NamedThing MLL1 complex A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-11T11:11:36Z cellular_component owl:Class GO:0102161 biolink:NamedThing copal-8-ol diphosphate synthase activity Catalysis of the reaction: copal-8-ol diphosphate <=> 2-trans,6-trans,10-trans-geranylgeranyl diphosphate + H2O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.133|RHEA:32703|MetaCyc:RXN-11772 molecular_function owl:Class GO:0070698 biolink:NamedThing type I activin receptor binding Binding to a type I activin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2009-06-04T04:15:21Z molecular_function owl:Class GO:0060321 biolink:NamedThing acceptance of pollen The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the acceptance of pollen by cells in the stigma. tmpzr1t_l9r_go_relaxed.owl acceptance of non-self pollen|acceptance of self pollen biological_process owl:Class GO:0047454 biolink:NamedThing phaseollidin hydratase activity Catalysis of the reaction: phaseollidin hydrate = H(2)O + phaseollidin. tmpzr1t_l9r_go_relaxed.owl phaseollidin-hydrate hydro-lyase (phaseollidin-forming)|phaseollidin-hydrate hydro-lyase activity MetaCyc:4.2.1.97-RXN|EC:4.2.1.97|RHEA:19769|KEGG_REACTION:R04728 molecular_function owl:Class GO:0044245 biolink:NamedThing polysaccharide digestion The whole of the physical, chemical, and biochemical processes carried out by living organisms to break down ingested polysaccharides into components that may be easily absorbed and directed into metabolism. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034730 biolink:NamedThing SmD-containing SMN-Sm protein complex An SMN-Sm protein complex formed by the association of the methylated Sm proteins B/B', D1, D2, D3, E, F, and G with the SMN complex. tmpzr1t_l9r_go_relaxed.owl SMN-containing protein complex cellular_component owl:Class GO:0106231 biolink:NamedThing protein-propionyllysine depropionylase activity Catalysis of the reaction:H2O + N(6)-propanoyl-L-lysyl-[protein] + NAD(+) = 3''-O-propanoyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide. tmpzr1t_l9r_go_relaxed.owl RHEA:23500 This reaction is the removal of a propionyl group from a propionylated lysine residue of a protein or peptide. hjd 2019-10-18T14:14:47Z molecular_function owl:Class GO:0050412 biolink:NamedThing cinnamate beta-D-glucosyltransferase activity Catalysis of the reaction: trans-cinnamate + UDP-D-glucose = 1-O-trans-cinnamoyl-beta-D-glucopyranose + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:trans-cinnamate beta-D-glucosyltransferase activity|UDPG:t-cinnamate glucosyltransferase activity|cinnamate b-D-glucosyltransferase activity|UDP-glucose:trans-cinnamate beta-D-glucosyltransferase activity|cinnamate glucosyltransferase activity|uridine diphosphoglucose-cinnamate glucosyltransferase activity KEGG_REACTION:R02256|MetaCyc:CINNAMATE-GLUCOSYLTRANSFERASE-RXN|EC:2.4.1.177|RHEA:13437 molecular_function owl:Class GO:0045480 biolink:NamedThing galactose oxidase activity Catalysis of the reaction: D-galactose + O2 = D-galacto-hexodialdose + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl D-galactose oxidase activity|D-galactose:oxygen 6-oxidoreductase activity|beta-galactose oxidase activity MetaCyc:GALACTOSE-OXIDASE-RXN|RHEA:24160|EC:1.1.3.9 molecular_function owl:Class GO:0102323 biolink:NamedThing 2-isopropylphenol monooxygenase activity Catalysis of the reaction: 2-isopropylphenol + O2 + NADH + H+ = 3-isopropylcatechol + H2O + NAD. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13152 molecular_function owl:Class GO:0042497 biolink:NamedThing triacyl lipopeptide binding Binding to a lipopeptide containing a nonprotein moiety consisting of three acyl groups. tmpzr1t_l9r_go_relaxed.owl bacterial triacyl lipoprotein binding|bacterial triacyl lipopeptide binding|triacylated lipopeptide binding Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature. molecular_function owl:Class GO:0047141 biolink:NamedThing glutathione-cystine transhydrogenase activity Catalysis of the reaction: cystine + 2 reduced glutathione = oxidized glutathione + 2 L-cysteine. tmpzr1t_l9r_go_relaxed.owl glutathione:cystine oxidoreductase|NADPH-dependent GSH-cystine transhydrogenase|GSH-cystine transhydrogenase EC:1.8.4.4|MetaCyc:1.8.4.4-RXN|RHEA:12613 molecular_function owl:Class GO:0103043 biolink:NamedThing 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase activity Catalysis of the reaction: 5-phosphonato-alpha-D-ribose cyclic-1,2-phosphate + H2O <=> H+ + alpha-D-ribose 1,5-bisphosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:34795|MetaCyc:RXN0-6710|EC:3.1.4.55 molecular_function owl:Class GO:0098061 biolink:NamedThing viral capsid, internal space The region of a virus contained within the capsid shell, and usually containing the viral genome and accessory proteins. tmpzr1t_l9r_go_relaxed.owl internal head protein bm 2012-08-01T12:12:47Z cellular_component owl:Class GO:0047320 biolink:NamedThing D-4-hydroxyphenylglycine transaminase activity Catalysis of the reaction: 2-oxoglutarate + D-4-hydroxyphenylglycine = 4-hydroxyphenylglyoxylate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl D-4-hydroxyphenylglycine aminotransferase activity|D-hydroxyphenylglycine aminotransferase activity|D-4-hydroxyphenylglycine:2-oxoglutarate aminotransferase activity EC:2.6.1.72|KEGG_REACTION:R04234|RHEA:15589|MetaCyc:2.6.1.72-RXN molecular_function owl:Class GO:0103063 biolink:NamedThing trans-keto-C61-meroacyl-AMP ligase activity Catalysis of the reaction: ATP(4-) + H2O + a trans-keto-C61-meroacyl-[acp] <=> diphosphoric acid + a trans-keto-meroacyl-adenylate + a holo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN1G-4143 molecular_function owl:Class GO:0051997 biolink:NamedThing 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity Catalysis of the reaction: 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate + H+ = S-allantoin + CO2. tmpzr1t_l9r_go_relaxed.owl 4-(carbamoylamino)-5-hydroxy-2-oxo-2,5-dihydro-1H-imidazole-5-carboxylate decarboxylase activity|OHCU decarboxylase activity RHEA:26301|KEGG_REACTION:R06604|MetaCyc:RXN-6201 ai 2010-07-19T10:47:15Z molecular_function owl:Class GO:0046362 biolink:NamedThing ribitol biosynthetic process The chemical reactions and pathways resulting in the formation of ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. tmpzr1t_l9r_go_relaxed.owl ribitol anabolism|ribitol formation|ribitol biosynthesis|ribitol synthesis biological_process owl:Class GO:0030754 biolink:NamedThing apigenin 4'-O-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + 5,7,4'-trihydroxyflavone = S-adenosyl-L-homocysteine + 4'-methoxy-5,7-dihydroxyflavone. tmpzr1t_l9r_go_relaxed.owl flavonoid O-methyltransferase activity|S-adenosyl-L-methionine:5,7,4'-trihydroxyflavone 4'-O-methyltransferase activity|flavonoid methyltransferase activity RHEA:20429|MetaCyc:APIGENIN-4-O-METHYLTRANSFERASE-RXN|EC:2.1.1.75 molecular_function owl:Class GO:0047731 biolink:NamedThing catechol oxidase (dimerizing) activity Catalysis of the reaction: 4 catechol + 3 O2 = 2 dibenzo[1,4]dioxin-2,3-dione + 6 H2O. tmpzr1t_l9r_go_relaxed.owl catechol:oxygen oxidoreductase (dimerizing) EC:1.1.3.14|MetaCyc:CATECHOL-OXIDASE-DIMERIZING-RXN|RHEA:12809 molecular_function owl:Class GO:0106376 biolink:NamedThing 2-hydroxyphytanoyl-CoA lyase activity Catalysis of the reaction: 2-hydroxyphytanoyl-CoA = 2,6,10,14-tetramethylpentadecanal + formyl-CoA. tmpzr1t_l9r_go_relaxed.owl RHEA:25355 hjd 2021-04-16T12:47:53Z molecular_function owl:Class GO:0045353 biolink:NamedThing interleukin-1 type II receptor antagonist activity Blocks the binding of interleukin-1 to interleukin-1 type II receptors. tmpzr1t_l9r_go_relaxed.owl IL-1ra type II molecular_function owl:Class GO:0052741 biolink:NamedThing (R)-limonene 6-monooxygenase activity Catalysis of the reaction: (4R)-limonene + H+ + NADPH + O2 = (1R,5S)-carveol + H2O + NADP+. tmpzr1t_l9r_go_relaxed.owl (+)-limonene 6-monooxygenase activity|(+)-limonene-6-hydroxylase activity|(R)-limonene,NADPH:oxygen oxidoreductase (6-hydroxylating) activity RHEA:18957|KEGG_REACTION:R06119|MetaCyc:1.14.13.84-RXN|EC:1.14.14.53 molecular_function owl:Class GO:0097667 biolink:NamedThing SCF-Rcy1/Pof6 ubiquitin ligase complex An SCF ubiquitin ligase complex in which the F-box protein is Rcy1 in S. cerevisiae (Pof6 in S. pombe). tmpzr1t_l9r_go_relaxed.owl pr 2014-10-06T10:28:09Z cellular_component owl:Class GO:0001601 biolink:NamedThing peptide YY receptor activity Combining with gut peptide YY to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047672 biolink:NamedThing anthranilate N-benzoyltransferase activity Catalysis of the reaction: anthranilate + benzoyl-CoA = N-benzoylanthranilate + CoA. tmpzr1t_l9r_go_relaxed.owl benzoyl-CoA:anthranilate N-benzoyltransferase KEGG_REACTION:R02453|EC:2.3.1.144|MetaCyc:ANTHRANILATE-N-BENZOYLTRANSFERASE-RXN|RHEA:21600 molecular_function owl:Class GO:0050269 biolink:NamedThing coniferyl-aldehyde dehydrogenase activity Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl coniferyl aldehyde:NAD(P)+ oxidoreductase activity EC:1.2.1.68|MetaCyc:RXN-1241 molecular_function owl:Class GO:0102256 biolink:NamedThing neoagarohexaose 1,3-alpha-3,6-anhydro-L-galactosidase activity Catalysis of the reaction: neoagarohexaose + H2O <=> 3,6-anhydro-alpha-L-galactopyranose + agaropentaose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12429|EC:3.2.1.159 molecular_function owl:Class GO:0043957 biolink:NamedThing acryloyl-CoA reductase (NADP+) activity Catalysis of the reaction: acryloyl-CoA + NADPH + H+ = propionyl-CoA + NADP+. tmpzr1t_l9r_go_relaxed.owl enoyl-CoA hydratase/isomerase|AMP-dependent synthetase and ligase:enoyl-CoA hydratase/isomerase|acetyl-coenzyme A synthetase/GroES-like domain|acryloyl-CoA reductase (NADPH) activity|acrylyl-CoA reductase (NADPH) activity|acetyl-coenzyme A synthetase|AMP-dependent synthetase and ligase EC:1.3.1.84|MetaCyc:RXN-9087|RHEA:26454|KEGG_REACTION:R00919 Note that this function is one of the activities of the trifunctional enzyme propionyl-coenzyme A synthase. See PMID:11821399. molecular_function owl:Class GO:0102879 biolink:NamedThing (+)-thujopsene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (+)-thujopsene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8418|RHEA:30375|EC:4.2.3.79 molecular_function owl:Class GO:0033987 biolink:NamedThing 2-hydroxyisoflavanone dehydratase activity Catalysis of the reaction: 2,7,4'-trihydroxyisoflavanone = daidzein + H2O. tmpzr1t_l9r_go_relaxed.owl 2,7,4'-trihydroxyisoflavanone hydro-lyase (daidzein-forming) activity|2,7,4'-trihydroxyisoflavanone hydro-lyase activity MetaCyc:RXN-3284|RHEA:16445|EC:4.2.1.105 molecular_function owl:Class GO:0034838 biolink:NamedThing menthone dehydrogenase activity Catalysis of the reaction: (-)-(2S,5R)-menthone + NAD+ = (5R)-menth-2-enone + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1183 molecular_function owl:Class GO:1901514 biolink:NamedThing ATPase-coupled lipo-chitin oligosaccharide transmembrane transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + lipo-chitin oligosaccharide(in) = ADP + phosphate + lipo-chitin oligosaccharide(out). tmpzr1t_l9r_go_relaxed.owl lipo-chitin oligosaccharide transmembrane-transporting ATPase activity jl 2012-10-18T11:52:55Z molecular_function owl:Class GO:0102626 biolink:NamedThing parthenolide synthase activity Catalysis of the reaction: costunolide + NADPH + O2 + H+ <=> parthenolide + NADP(3-) + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15531 molecular_function owl:Class GO:0019149 biolink:NamedThing 3-chloro-D-alanine dehydrochlorinase activity Catalysis of the reaction: 3-chloro-D-alanine + H2O = pyruvate + chloride + NH3. tmpzr1t_l9r_go_relaxed.owl 3-chloro-D-alanine chloride-lyase (deaminating)|beta-chloro-D-alanine dehydrochlorinase activity|3-chloro-D-alanine chloride-lyase (deaminating; pyruvate-forming) RHEA:18873|MetaCyc:3-CHLORO-D-ALANINE-DEHYDROCHLORINASE-RXN|EC:4.5.1.2 molecular_function owl:Class GO:0061690 biolink:NamedThing lipoamidase activity Catalysis of the cleavage of the amide bond to release lipoic acid from a lipoylated protein. tmpzr1t_l9r_go_relaxed.owl lipoyl-X-hydrolase MetaCyc:RXN-13031 dph 2015-05-05T10:06:49Z molecular_function owl:Class GO:0019479 biolink:NamedThing L-alanine oxidation to D-lactate and ammonia The chemical reactions and pathways resulting in the breakdown of L-alanine to D-lactate and ammonia. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ALACAT2-PWY biological_process owl:Class GO:0035585 biolink:NamedThing calcium-mediated signaling using extracellular calcium source A series of molecular signals in which a cell uses calcium ions imported from an extracellular source to convert a signal into a response. tmpzr1t_l9r_go_relaxed.owl extracellular calcium influx|calcium signalling using extracellular calcium source|calcium signaling using extracellular calcium source|calcium-mediated signalling using extracellular calcium source bf 2010-10-18T11:04:27Z biological_process owl:Class GO:0019824 biolink:NamedThing P6 peroxisome A subform of peroxisome that corresponds to an intermediate in a peroxisome assembly pathway, which operates by conversion of peroxisomal subforms in the direction P1, P2 -> P3 -> P4 -> P5 -> P6. P6 peroxisomes are distinguished from the other subforms on the bases of buoyant density and protein content, and are equivalent to mature peroxisomes. tmpzr1t_l9r_go_relaxed.owl peroxisome vesicle Note that this peroxisome assembly pathway is described in the yeast Yarrowia lipolytica. See also the cellular component terms 'P1 peroxisome ; GO:0019819', 'P2 peroxisome ; GO:0019820', 'P3 peroxisome ; GO:0019821', 'P4 peroxisome ; GO:0019822', and 'P5 peroxisome ; GO:0019823'. cellular_component owl:Class GO:0080031 biolink:NamedThing methyl salicylate esterase activity Catalysis of the reaction: methyl salicylate + H2O = salicylic acid + methanol + H+. tmpzr1t_l9r_go_relaxed.owl MESA esterase activity|salicylic acid methyl ester esterase activity|methyl SA esterase activity|methylsalicylate esterase activity MetaCyc:RXNQT-4366 molecular_function owl:Class GO:0004198 biolink:NamedThing calcium-dependent cysteine-type endopeptidase activity Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium. tmpzr1t_l9r_go_relaxed.owl calpain activity Reactome:R-HSA-8848658|Reactome:R-HSA-8863012 molecular_function owl:Class GO:0017041 biolink:NamedThing galactosylgalactosylglucosylceramidase activity Catalysis of the reaction: D-galactosyl-D-galactosyl-D-glucosyl-N-acylsphingosine + H2O = lactosyl-N-acylsphingosine + D-galactose. tmpzr1t_l9r_go_relaxed.owl trihexosylceramide alpha-galactosidase activity|trihexosyl ceramide galactosidase activity|ceramide trihexosidase activity|D-galactosyl-D-galactosyl-D-glucosyl-N-acylsphingosine galactohydrolase activity|ceramidetrihexosidase activity|ceramidetrihexoside alpha-galactosidase activity EC:3.2.1.47|RHEA:21112|MetaCyc:3.2.1.47-RXN molecular_function owl:Class GO:1990506 biolink:NamedThing mitotic DNA-dependent DNA replication A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl al 2014-10-01T14:13:23Z biological_process owl:Class GO:0008666 biolink:NamedThing 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity Catalysis of the reaction: (S)-2,3,4,5-tetrahydrodipicolinate + H(2)O + succinyl-CoA = L-2-succinylamino-6-oxopimelate + CoA. tmpzr1t_l9r_go_relaxed.owl succinyl-CoA:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity|tetrahydropicolinate succinylase activity|tetrahydrodipicolinate N-succinyltransferase activity|succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase activity|succinyl-CoA:(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity|tetrahydrodipicolinate succinyltransferase activity|THDP N-succinyltransferase activity|tetrahydrodipicolinate succinylase activity RHEA:17325|KEGG_REACTION:R04365|MetaCyc:TETHYDPICSUCC-RXN|EC:2.3.1.117 molecular_function owl:Class GO:0140240 biolink:NamedThing perforant pathway to dendrate granule cell synapse A neuron to neuron synapse of a pyramidal neuron in the entorhinal cortex onto a granule cell in the dentate gyrus of the hippocampus. tmpzr1t_l9r_go_relaxed.owl perforant pathway to DG granule cell synapse https://github.com/geneontology/synapse/issues/234 pg 2018-07-15T08:21:43Z cellular_component owl:Class GO:0030625 biolink:NamedThing U11 snRNA binding Binding to a U11 small nuclear RNA (U11 snRNA). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102556 biolink:NamedThing dammarenediol 12-hydroxylase activity Catalysis of the reaction: dammarenediol-II + NADPH + H+ + O2 <=> (20S)-protopanaxadiol + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl EC:1.14.14.120|MetaCyc:RXN-14975|RHEA:38579 molecular_function owl:Class GO:0080103 biolink:NamedThing 4-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 4-methylthiopropyl-glucosinolate = 4-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T04:27:45Z molecular_function owl:Class GO:0043777 biolink:NamedThing cobalt-precorrin-7 C15-methyltransferase activity Catalysis of the reaction: cobalt-precorrin 7 + S-adenosyl-L-methionine = cobalt-precorrin 8 + S-adenosyl-L-homocysteine + CO2. tmpzr1t_l9r_go_relaxed.owl precorrin-6 methyltransferase|precorrin-6Y C5,15-methyltransferase (decarboxylating)|cobalt-precorrin 7 C15-methyltransferase activity|precorrin-6Y methylase MetaCyc:RXN-8767|RHEA:34591 molecular_function owl:Class GO:0047648 biolink:NamedThing alkylamidase activity Catalysis of the reaction: N-methylhexanamide + H(2)O = hexanoate + methylammonium. tmpzr1t_l9r_go_relaxed.owl N-methylhexanamide amidohydrolase activity KEGG_REACTION:R03620|RHEA:20081|EC:3.5.1.39|MetaCyc:ALKYLAMIDASE-RXN molecular_function owl:Class GO:0018730 biolink:NamedThing glutaconate CoA-transferase activity Catalysis of the reaction: acetyl-CoA + (E)-glutaconate = acetate + glutaconyl-1-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:(E)-glutaconate CoA-transferase activity MetaCyc:GLUTACONATE-COA-TRANSFERASE-RXN|EC:2.8.3.12|UM-BBD_reactionID:r0085|RHEA:23208 molecular_function owl:Class GO:0071115 biolink:NamedThing alpha5-beta1 integrin-endostatin complex A protein complex that consists of an alpha5-beta1 integrin complex bound to endostatin, the NC1 domain of the alpha1 chain of type XVIII collagen. tmpzr1t_l9r_go_relaxed.owl ITGA5-ITGB1-CAL4A3 complex mah 2009-11-13T02:18:57Z cellular_component owl:Class GO:0061596 biolink:NamedThing 3-sulfolactaldehyde reductase activity Catalysis of the reaction 2,3-dihydroxypropane-1-sulfonate + NAD+ = 3-sulfolactaldehyde + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15299|RHEA:40511|EC:1.1.1.373 dph 2014-02-10T10:09:43Z molecular_function owl:Class GO:1990644 biolink:NamedThing microtubule site clamp The binding activity of a molecule that attaches the spindle microtubules to the kinetochore. tmpzr1t_l9r_go_relaxed.owl vw 2015-02-13T15:50:13Z molecular_function owl:Class GO:0075508 biolink:NamedThing entry of viral genome into host nucleus via retainment of capsid in nuclear pore complex and release of genome into nucleoplasm Viral penetration into the host nucleus where a viral capsid enters the host nuclear pore complex (NPC) but remains attached to the pore on the nuclear side. The capsid then disassembles, releasing the viral genome into the nucleoplasm. tmpzr1t_l9r_go_relaxed.owl entry of viral genome into host nucleus via attachment of capsid to nuclear pore complex and release of genome into nucleoplasm This mechanism is used by viruses such as Hepadnaviridae whose capsids enter the NPC but are too big to pass intact into the nucleus. jl 2011-07-26T04:56:10Z biological_process owl:Class GO:0047867 biolink:NamedThing dimethylmalate dehydrogenase activity Catalysis of the reaction: (R)-3,3-dimethylmalate + NAD(+) = 3-methyl-2-oxobutanoate + CO(2) + NADH. tmpzr1t_l9r_go_relaxed.owl beta,beta-dimethylmalate dehydrogenase activity|(R)-3,3-dimethylmalate:NAD+ oxidoreductase (decarboxylating) KEGG_REACTION:R01211|RHEA:13321|MetaCyc:DIMETHYLMALATE-DEHYDROGENASE-RXN|EC:1.1.1.84 molecular_function owl:Class GO:1990838 biolink:NamedThing poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends Catalysis of 3' exonucleolytic cleavage of poly(U), to form poly(U)-N containing a 3' uridine cyclic phosphate (U>P). tmpzr1t_l9r_go_relaxed.owl al 2015-08-26T10:24:51Z molecular_function owl:Class GO:0070073 biolink:NamedThing clustering of voltage-gated calcium channels The process in which voltage-gated calcium channels become localized together in high densities. tmpzr1t_l9r_go_relaxed.owl clustering of voltage-dependent calcium channels|clustering of voltage gated calcium channels|voltage-gated calcium channel clustering biological_process owl:Class GO:0071978 biolink:NamedThing bacterial-type flagellum-dependent swarming motility Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria. tmpzr1t_l9r_go_relaxed.owl bacterial-type flagellum-mediated cell swarming|bacterial-type flagellar swarming motility mah 2010-10-21T03:00:14Z biological_process owl:Class GO:0050439 biolink:NamedThing 2-hydroxy-3-oxoadipate synthase activity Catalysis of the reaction: 2-oxoglutarate + glyoxylate + H(+) = 2-hydroxy-3-oxoadipate + CO(2). tmpzr1t_l9r_go_relaxed.owl oxoglutarate: glyoxylate carboligase activity|2-hydroxy-3-oxoadipate glyoxylate-lyase (carboxylating) activity|alpha-ketoglutaric-glyoxylic carboligase activity|2-oxoglutarate:glyoxylate succinaldehydetransferase (decarboxylating)|oxoglutarate:glyoxylate carboligase activity|2-hydroxy-3-oxoadipate synthetase activity RHEA:14341|EC:2.2.1.5|KEGG_REACTION:R00474|MetaCyc:2-HYDROXY-3-OXOADIPATE-SYNTHASE-RXN molecular_function owl:Class GO:0008795 biolink:NamedThing NAD+ synthase activity Catalysis of the reaction: ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+. tmpzr1t_l9r_go_relaxed.owl diphosphopyridine nucleotide synthetase activity|NAD synthase activity|NAD(+) synthetase activity|nicotinamide adenine dinucleotide synthetase activity|deamido-NAD+:ammonia ligase (AMP-forming)|NAD synthase (AMP-forming)|NAD synthetase activity|NAD+ synthetase activity EC:6.3.1.5|MetaCyc:NAD-SYNTH-NH3-RXN|RHEA:21188 GO:0008749|GO:0016965 molecular_function owl:Class GO:0004120 biolink:NamedThing photoreceptor cyclic-nucleotide phosphodiesterase activity Catalysis of the reaction: nucleoside cyclic phosphate + H2O = nucleoside phosphate. This reaction is the hydrolysis of bonds in a cyclic nucleotide. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102469 biolink:NamedThing naringenin 2-hydroxylase activity Catalysis of the reaction: (S)-naringenin + NADPH + O2 <=> 2-hydroxynaringenin + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14069|RHEA:57588 molecular_function owl:Class GO:0140591 biolink:NamedThing nuclear envelope budding The process by which large macromolecular complexes are budded through the inner nuclear membrane, into the perinuclear space, thus acquiring a membrane envelope. The enveloped particle fuses with the outer nuclear membrane and is released into the cytoplasm. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20782 pg 2021-02-08T08:31:06Z biological_process owl:Class GO:0043424 biolink:NamedThing protein histidine kinase binding Binding to a protein histidine kinase. tmpzr1t_l9r_go_relaxed.owl histidine-protein kinase binding|protein-histidine kinase binding|histidine kinase binding molecular_function owl:Class GO:0008775 biolink:NamedThing acetate CoA-transferase activity Catalysis of the reaction: acyl-CoA + acetate = a fatty acid anion + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:acetoacetate CoA transferase activity|acetate coenzyme A-transferase activity|acyl-CoA:acetate CoA-transferase activity|butyryl coenzyme A transferase activity|succinyl-CoA:acetate CoA transferase activity|butyryl CoA:acetate CoA transferase activity EC:2.8.3.8|RHEA:13381|UM-BBD_enzymeID:e0012|MetaCyc:ACECOATRANS-RXN|Reactome:R-HSA-2066788 molecular_function owl:Class GO:0036220 biolink:NamedThing ITP diphosphatase activity Catalysis of the reaction: ITP + H2O = IMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl inosine-5'-triphosphate pyrophosphohydrolase activity Reactome:R-HSA-2509827|KEGG_REACTION:R00720|MetaCyc:RXN0-6382|RHEA:29399 bf 2012-05-08T01:47:59Z molecular_function owl:Class GO:0016977 biolink:NamedThing chitosanase activity Catalysis of the endohydrolysis of beta-1,4-linkages between N-acetyl-D-glucosamine and D-glucosamine residues in a partly acetylated chitosan. tmpzr1t_l9r_go_relaxed.owl chitosan N-acetylglucosaminohydrolase activity EC:3.2.1.132|MetaCyc:3.2.1.132-RXN molecular_function owl:Class GO:1990413 biolink:NamedThing eyespot apparatus A small pigmented organelle used in single-celled organisms to detect light. tmpzr1t_l9r_go_relaxed.owl eyespot|stigma cjm 2014-07-03T21:26:24Z cellular_component owl:Class GO:0097072 biolink:NamedThing interferon regulatory factor 3 complex An interferon regulatory factor complex that consists of a homodimer of interferon regulatory factor 3. tmpzr1t_l9r_go_relaxed.owl IRF3:IRF3 complex pr 2011-06-15T04:26:10Z cellular_component owl:Class GO:0004090 biolink:NamedThing carbonyl reductase (NADPH) activity Catalysis of the reaction: R-CHOH-R' + NADP+ = R-CO-R' + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH2-dependent carbonyl reductase activity|aldehyde reductase I activity|aldehyde reductase 1|secondary-alcohol:NADP+ oxidoreductase activity|NADPH-dependent carbonyl reductase activity|prostaglandin 9-ketoreductase activity|xenobiotic ketone reductase activity|carbonyl reductase activity|ALR3|nonspecific NADPH-dependent carbonyl reductase activity EC:1.1.1.184|RHEA:19257|Reactome:R-HSA-8937419|MetaCyc:CARBONYL-REDUCTASE-NADPH-RXN molecular_function owl:Class GO:0097409 biolink:NamedThing glial cytoplasmic inclusion Non-membrane-bound cytoplasmic inclusions composed of 10-40 nm granule-coated fibrils. These inclusions have an abnormal accumulation of alpha-synuclein protein and are found in association with multiple system atrophy. tmpzr1t_l9r_go_relaxed.owl GCI|Papp-Lantos body NIF_Subcellular:nlx_subcell_20090703 pr 2012-10-31T13:55:11Z cellular_component owl:Class GO:0106386 biolink:NamedThing (3R)-hydroxyacyl-CoA dehydrogenase (NAD) activity Catalysis of the reaction: 3R-hydroxyacyl-CoA + NAD(+) = 3-oxoacyl-CoA + NADH. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.n12|RHEA:32711 hjd 2021-07-01T18:41:23Z molecular_function owl:Class GO:0071118 biolink:NamedThing alphaV-beta3 integrin-NOV complex A protein complex that consists of an alphaV-beta3 integrin complex bound to the extracellular matrix protein NOV. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-FN-1-NOV complex mah 2009-11-13T02:20:20Z cellular_component owl:Class GO:1990083 biolink:NamedThing DnaA-Hda complex A protein complex that inactivates the function of DnaA by inhibiting the phosphorylation of DnaA-ADP to DnaA-ATP and thereby preventing multiple events of replication initiation. In E. coli, this complex is composed of DnaA and Hda. tmpzr1t_l9r_go_relaxed.owl bhm 2013-04-30T11:49:04Z cellular_component owl:Class GO:0034530 biolink:NamedThing 4-hydroxymethylsalicyaldehyde dehydrogenase activity Catalysis of the reaction: 4-hydroxymethylsalicylaldehyde + NAD+ + H2O = 4-hydroxymethylsalicylate + NADH + 2 H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0767|EC:1.2.1.- molecular_function owl:Class GO:0003320 biolink:NamedThing heart rudiment involution The inward folding of myocardial tissue derived from the right half of the heart rudiment that will form the future ventral part of the heart tube. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-27T09:29:24Z biological_process owl:Class GO:0097256 biolink:NamedThing phenyllactate dehydrogenase activity Catalysis of the reaction: (R)-3-phenyllactate + NAD+ = 3-phenylpyruvate + H+ + NADH. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21412 RHEA:38351 This enzymatic activity is usually negligible, but may become prominent when phenylalanine levels are abnormally high as in the human disease phenylketonuria (PKU). pr 2012-03-07T11:39:39Z molecular_function owl:Class GO:1902549 biolink:NamedThing protein localization to Mei2 nuclear dot A process in which a protein is transported to, or maintained in, a location within a Mei2 nuclear dot. tmpzr1t_l9r_go_relaxed.owl protein localization to Mei2 dot|protein localisation to Mei2 nuclear dot|protein localisation in Mei2 nuclear dot|protein localization in Mei2 nuclear dot mah 2013-12-04T16:17:06Z biological_process owl:Class GO:0004107 biolink:NamedThing chorismate synthase activity Catalysis of the reaction: 5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate. tmpzr1t_l9r_go_relaxed.owl 5-enolpyruvylshikimate-3-phosphate phospholyase activity|5-O-(1-carboxyvinyl)-3-phosphoshikimate phosphate-lyase (chorismate-forming)|5-O-(1-carboxyvinyl)-3-phosphoshikimate phosphate-lyase activity KEGG_REACTION:R01714|MetaCyc:CHORISMATE-SYNTHASE-RXN|RHEA:21020|EC:4.2.3.5 molecular_function owl:Class GO:0102497 biolink:NamedThing scyllo-inositol dehydrogenase (NADP+) activity Catalysis of the reaction: scyllo-inositol + NADP <=> 2,4,6/3,5-pentahydroxycyclohexanone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:39063|MetaCyc:RXN-14347|EC:1.1.1.371 molecular_function owl:Class GO:0070284 biolink:NamedThing 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase activity Catalysis of the reaction: 5-aminoimidazole ribonucleotide + S-adenosylmethionine = 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate + 5'deoxyadenosine. tmpzr1t_l9r_go_relaxed.owl ThiC|HMP-P synthase activity molecular_function owl:Class GO:0034545 biolink:NamedThing fumarylpyruvate hydrolase activity Catalysis of the reaction: fumarylpyruvate + H2O = fumarate + pyruvate + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.7.1.20|UM-BBD_reactionID:r0811|RHEA:26168 molecular_function owl:Class GO:0051451 biolink:NamedThing myoblast migration The orderly movement of a myoblast from one site to another, often during the development of a multicellular organism. A myoblast is a cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0005053 biolink:NamedThing peroxisome matrix targeting signal-2 binding Binding to a type 2 peroxisome targeting signal, a nonapeptide with a broad consensus sequence of (R/K)-(L/V/I)-(XXXXX)-(H/Q)-(L/A/F). tmpzr1t_l9r_go_relaxed.owl PTS2 binding|peroxisome targeting signal-2 binding|PTS2 receptor|PEX7|peroxisome targeting signal-2 receptor|peroxisomal targeting signal 2 (PTS2) binding molecular_function owl:Class GO:0106371 biolink:NamedThing fluorescent chlorophyll catabolite monooxygenase (deformylase) activity Catalysis of the reaction: O2 + primary fluorescent chlorophyll catabolite + reduced [NADPH--hemoprotein reductase] = formate + 2 H+ + oxidized [NADPH--hemoprotein reductase] + primary fluorescent dioxobilin-type chlorophyll catabolite. tmpzr1t_l9r_go_relaxed.owl hjd 2021-04-01T16:32:56Z molecular_function owl:Class GO:0047440 biolink:NamedThing 2-dehydro-3-deoxy-D-pentonate aldolase activity Catalysis of the reaction: 2-dehydro-3-deoxy-D-arabinonate = glycolaldehyde + pyruvate. tmpzr1t_l9r_go_relaxed.owl 3-deoxy-D-pentulosonic acid aldolase|2-keto-3-deoxy-D-pentonate aldolase activity|2-dehydro-3-deoxy-D-pentonate glycolaldehyde-lyase activity MetaCyc:4.1.2.28-RXN|EC:4.1.2.28|RHEA:20609|KEGG_REACTION:R01782 molecular_function owl:Class GO:0035062 biolink:NamedThing omega speckle A nucleoplasmic speckle distributed in the interchromatin space of cells in close proximity to chromatin. Omega speckles are distinct from interchromatin granules and contain heterogeneous nuclear RNA-binding proteins (hnRNPs). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0042885 biolink:NamedThing microcin B17 transport The directed movement of microcin B17, a bactericidal peptide (antibiotic) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052641 biolink:NamedThing benzoic acid glucosyltransferase activity Catalysis of the reaction: benzoic acid + UDP-glucose = benzoic acid glucose ester + UDP. tmpzr1t_l9r_go_relaxed.owl UDP:glucose:BA glucosyltransferase activity|UDP:glucose:benzoate glucosyltransferase activity|benzoate glucosyltransferase activity|UDP:glucose:benzoic acid glucosyltransferase activity MetaCyc:RXN-11660 molecular_function owl:Class GO:0102731 biolink:NamedThing D-myo-inositol (1,3,4,6)-tetrakisphosphate 2-kinase activity Catalysis of the reaction: myo-inositol 1,3,4,6-tetrakisphosphate(8-) + ATP = H+ + 1L-myo-inositol 1,2,3,4,6-pentakisphosphate(10-) + ADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7185 molecular_function owl:Class GO:2001066 biolink:NamedThing amylopectin binding Binding to amylopectin. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-14T11:46:37Z molecular_function owl:Class GO:1901515 biolink:NamedThing poly-beta-1,6-N-acetyl-D-glucosamine transmembrane transporter activity Enables the transfer of poly-beta-1,6-N-acetyl-D-glucosamine from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-18T11:57:04Z molecular_function owl:Class GO:0033948 biolink:NamedThing fructan beta-(2,1)-fructosidase activity Catalysis of the hydrolysis of terminal, non-reducing (2->1) linked beta-D-fructofuranose residues in fructans. tmpzr1t_l9r_go_relaxed.owl 1-fructan exohydrolase activity|1-FEH II|1-FEH w1|1-FEH w2|beta-(2,1)-D-fructan fructohydrolase activity|beta-(2,1)-linkage-specific fructan-beta-fructosidase activity|beta-(2,1)-fructan exohydrolase activity MetaCyc:3.2.1.153-RXN|EC:3.2.1.153 molecular_function owl:Class GO:0062116 biolink:NamedThing phenyloplast A chloroplast-derived plastid in which the solid form of phenol is stored. tmpzr1t_l9r_go_relaxed.owl dph 2019-03-15T11:57:05Z cellular_component owl:Class GO:0035663 biolink:NamedThing Toll-like receptor 2 binding Binding to a Toll-like 2 protein, a pattern recognition receptor that binds microbial pattern motifs to initiate an innate immune response. tmpzr1t_l9r_go_relaxed.owl TLR2 binding bf 2011-02-01T10:21:51Z molecular_function owl:Class GO:0050306 biolink:NamedThing sucrose 1F-fructosyltransferase activity Catalysis of the reaction: 2 sucrose = D-glucose + 1F-beta-D-fructosylsucrose. tmpzr1t_l9r_go_relaxed.owl sucrose:sucrose 1F-beta-D-fructosyltransferase activity|sucrose:sucrose 1'-beta-D-fructosyltransferase activity|sucrose:sucrose 1(F)-beta-D-fructosyltransferase activity|sucrose:sucrose fructosyltransferase activity|SST activity|sucrose:sucrose 1-fructosyltransferase activity|sucrose 1(F)-fructosyltransferase activity|sucrose-sucrose 1-fructosyltransferase activity RHEA:23312|EC:2.4.1.99|MetaCyc:SUCROSE-1F-FRUCTOSYLTRANSFERASE-RXN molecular_function owl:Class GO:0035355 biolink:NamedThing Toll-like receptor 2-Toll-like receptor 6 protein complex A heterodimeric protein complex containing Toll-like receptor 2 (TLR2) and Toll-like receptor 6 (TLR6). tmpzr1t_l9r_go_relaxed.owl TLR2-TLR6 protein complex|TLR2:TLR6 heterodimer|toll-like receptor TLR6:TLR2 heterodimeric complex|TLR6:TLR2 complex bf 2010-03-04T04:37:00Z GO:0038126 cellular_component owl:Class GO:0007021 biolink:NamedThing tubulin complex assembly The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer. tmpzr1t_l9r_go_relaxed.owl tubulin-specific chaperone activity|tubulin folding|tubulin assembly biological_process owl:Class GO:0102274 biolink:NamedThing glutathione S-conjugate carboxypeptidase activity Catalysis of the reaction: H2O + a glutathione-toxin conjugate <=> glycine + a [Glu-Cys]-S-conjugate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12532 molecular_function owl:Class GO:0048283 biolink:NamedThing indeterminate inflorescence morphogenesis The process in which the anatomical structures of determinate inflorescences are generated and organized. A determinate inflorescence is one that can produce an undefined number of floral meristems. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1904713 biolink:NamedThing beta-catenin destruction complex binding Binding to a beta-catenin destruction complex. tmpzr1t_l9r_go_relaxed.owl Axin-APC-beta-catenin-GSK3B complex binding|beta-catenin degradation complex binding|23S APC complex binding|APC-Axin-1-beta-catenin complex binding|BDC binding bf 2015-10-05T14:34:14Z molecular_function owl:Class GO:0052809 biolink:NamedThing acharan sulfate lyase activity Catalysis of the cleavage of a carbon-oxygen bond in acharan sulfate, a glycosaminoglycan with a uniformly repeating disaccharide structure of alpha-D-N-acetylglucosaminyl-2-O-sulfo-alpha-L-iduronic acid. tmpzr1t_l9r_go_relaxed.owl ai 2011-09-26T02:58:28Z molecular_function owl:Class GO:0047679 biolink:NamedThing arginine racemase activity Catalysis of the reaction: L-arginine = D-arginine. tmpzr1t_l9r_go_relaxed.owl EC:5.1.1.9|RHEA:18069|MetaCyc:ARGININE-RACEMASE-RXN molecular_function owl:Class GO:0097097 biolink:NamedThing nasal suture morphogenesis The process in which the nasal suture is generated and organized. tmpzr1t_l9r_go_relaxed.owl internasal suture morphogenesis pr 2011-07-05T03:09:04Z biological_process owl:Class GO:0051993 biolink:NamedThing abscisic acid glucose ester beta-glucosidase activity Catalysis of the reaction: abscisic acid glucose ester + H2O = abscisic acid + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl ABA-GE beta-glucosidase activity EC:3.2.1.175|MetaCyc:RXN-11469|RHEA:31347 ai 2010-07-16T02:16:59Z molecular_function owl:Class GO:0018560 biolink:NamedThing protocatechuate 3,4-dioxygenase type II activity Catalysis of the reaction: 4-sulfocatechol + O2 = 3-sulfomuconate. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0581 molecular_function owl:Class GO:0080176 biolink:NamedThing xyloglucan 1,6-alpha-xylosidase activity Catalysis of the hydrolysis of xyloglucan side chains so as to remove unsubstituted D-xylose residues attached to the glucose located at the non-reducing terminus. tmpzr1t_l9r_go_relaxed.owl dhl 2011-04-28T04:08:39Z molecular_function owl:Class GO:0106073 biolink:NamedThing dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity Catalysis of the addition of the third glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Glc(2)Man(9)GlcNAc(2)-PP-Dol. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.256|RHEA:29543 hjd 2017-11-28T19:16:37Z molecular_function owl:Class GO:0008502 biolink:NamedThing melatonin receptor activity Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0110152 biolink:NamedThing RNA NAD-cap (NAD-forming) hydrolase activity Catalysis of the reaction: a 5'-end NAD(+)-phospho-ribonucleoside in mRNA + H2O = a 5'-end phospho-ribonucleoside in mRNA + H(+) + NAD(+). tmpzr1t_l9r_go_relaxed.owl RHEA:60880 This reaction specifically hydrolyzes the nicotinamide adenine dinucleotide (NAD) cap from a subset of RNAs by removing the entire NAD moiety from the 5'-end of an NAD-capped RNA. kmv 2019-07-08T15:55:11Z molecular_function owl:Class GO:0008694 biolink:NamedThing 3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity Catalysis of the reaction: 3-octaprenyl-4-hydroxy benzoate = 2-octaprenylphenol + CO2. tmpzr1t_l9r_go_relaxed.owl 3-polyprenyl 4-hydroxybenzoate decarboxylase activity|3-polyprenyl-4-hydroxybenzoate carboxy-lyase activity|UbiD|polyprenyl p-hydroxybenzoate decarboxylase activity|PPHB decarboxylase activity|3-octaprenyl-4-hydroxybenzoate decarboxylase activity|UbiX MetaCyc:3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN|RHEA:27778|EC:4.1.1.98 GO:0019167 molecular_function owl:Class GO:0098822 biolink:NamedThing peptidyl-cysteine modification to L-cysteine persulfide The modification of peptidyl-cysteine to form peptidyl-L-cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl RESID:AA0269 biological_process owl:Class GO:0019486 biolink:NamedThing beta-alanine catabolic process to mevalonate semialdehyde, by transamination The chemical reactions and pathways resulting in the breakdown of beta-alanine into other compounds, including mevalonate semialdehyde, by transamination. tmpzr1t_l9r_go_relaxed.owl beta-alanine degradation to mevalonate semialdehyde, by transamination|beta-alanine breakdown to mevalonate semialdehyde, by transamination MetaCyc:BETA-ALA-DEGRADATION-I-PWY biological_process owl:Class GO:0060509 biolink:NamedThing type I pneumocyte differentiation The process in which a relatively unspecialized cell acquires specialized features of a type I pneumocyte. A type I pneumocyte is a flattened cell with greatly attenuated cytoplasm and a paucity of organelles. tmpzr1t_l9r_go_relaxed.owl small alveolar cell differentiation|squamous alveolar cell differentiation|membranous pneumocyte differentiation biological_process owl:Class GO:0031845 biolink:NamedThing type 5 neuropeptide Y receptor binding Binding to a type 5 neuropeptide Y receptor. tmpzr1t_l9r_go_relaxed.owl type 5 neuropeptide Y receptor ligand molecular_function owl:Class GO:0043426 biolink:NamedThing MRF binding Binding to Myogenic Regulatory Factor (MRF), a member of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors. tmpzr1t_l9r_go_relaxed.owl Mrf4 binding|Myf5 binding|MyoD binding|myogenin binding GO:0051579|GO:0051576|GO:0051577|GO:0051578 molecular_function owl:Class GO:0030305 biolink:NamedThing heparanase activity Catalysis of the cleavage of heparan sulfate; can degrade both heparan sulfate and heparin glycosaminoglycan chains. tmpzr1t_l9r_go_relaxed.owl heparinase activity Reactome:R-HSA-1678694|Reactome:R-HSA-1667005 molecular_function owl:Class GO:0097337 biolink:NamedThing response to ziprasidone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ziprasidone stimulus. Ziprasidone is a piperazine compound having 1,2-benzothiazol-3-yl- and 2-(6-chloro-1,3-dihydro-2-oxindol-5-yl)ethyl substituents attached to the nitrogen atoms. tmpzr1t_l9r_go_relaxed.owl pr 2012-06-12T11:05:31Z biological_process owl:Class GO:0052859 biolink:NamedThing glucan endo-1,4-beta-glucosidase activity Catalysis of the random hydrolysis of (1->4) linkages in (1->4)-beta-D-glucans. tmpzr1t_l9r_go_relaxed.owl beta-1->4-glucan hydrolase activity|endo-1,4-beta-D-glucanase activity|endo-1,4-beta-glucanase activity|1,4-beta-D-glucan glucanohydrolase activity|beta-1,4-glucan 4-glucanohydrolase activity|beta-1,4-glucanase activity|endo-(1,4)-beta-D-glucanase activity|endo-beta-1,4-glucanase activity|beta-1,4-glucan hydrolase activity|endo-(1->4)-beta-D-glucanase activity EC:3.2.1.- ai 2011-12-06T03:48:44Z molecular_function owl:Class GO:0106305 biolink:NamedThing mannogen catabolic process The chemical reactions and pathways resulting in the breakdown of mannogen, a mannose-containing polysaccharide that is a major energy reserve in Leishmania. tmpzr1t_l9r_go_relaxed.owl mannogen degradation|beta-1,2-mannan catabolism|mannogen catabolism|beta-1,2-mannan catabolic process|mannogen breakdown hjd 2020-09-09T13:55:16Z biological_process owl:Class GO:0102345 biolink:NamedThing 3-hydroxy-lignoceroyl-CoA dehydratase activity Catalysis of the reaction: (R)-3-hydroxylignoceroyl-CoA(4-) <=> trans-2-tetracosenoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.134|MetaCyc:RXN-13304 molecular_function owl:Class GO:0047436 biolink:NamedThing arylmalonate decarboxylase activity Catalysis of the reaction: 2-aryl-2-methylmalonate + H(+) = 2-arylpropionate + CO(2). tmpzr1t_l9r_go_relaxed.owl AMDase activity|2-aryl-2-methylmalonate carboxy-lyase activity|2-aryl-2-methylmalonate carboxy-lyase (2-arylpropanoate-forming)|AMDASE EC:4.1.1.76|MetaCyc:4.1.1.76-RXN|KEGG_REACTION:R05173|RHEA:20513 molecular_function owl:Class GO:0097100 biolink:NamedThing supercoiled DNA binding Binding to supercoiled DNA. For example, during replication and transcription, template DNA is negatively supercoiled in the receding downstream DNA and positively supercoiled in the approaching downstream DNA. tmpzr1t_l9r_go_relaxed.owl pr 2011-07-12T03:28:57Z molecular_function owl:Class GO:0043815 biolink:NamedThing phosphoribosylglycinamide formyltransferase 2 activity Catalysis of the reaction: formate + ATP + 5'-phospho-ribosylglycinamide = 5'-phosphoribosyl-N-formylglycinamide + ADP + diphosphate. tmpzr1t_l9r_go_relaxed.owl 5'-phosphoribosylglycinamide transformylase 2|GART 2|formate-dependent GAR transformylase activity|GAR transformylase 2 RHEA:24829|MetaCyc:GARTRANSFORMYL2-RXN molecular_function owl:Class GO:1900018 biolink:NamedThing phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex Any phosphorylation of RNA polymerase II C-terminal domain serine 5 residues that is involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex. tmpzr1t_l9r_go_relaxed.owl bf 2012-01-11T11:40:41Z biological_process owl:Class GO:0030926 biolink:NamedThing calcium incorporation into metallo-oxygen cluster via bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide The incorporation of calcium into a 4Mn-Ca-4O complex by bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide as in the photosystem II catalytic site. tmpzr1t_l9r_go_relaxed.owl RESID:AA0366 biological_process owl:Class GO:0030925 biolink:NamedThing calcium incorporation into metallo-oxygen cluster The incorporation of calcium into a metallo-oxygen cluster. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0034861 biolink:NamedThing benzothiazole-2-sulfonate hydrolase activity Catalysis of the reaction: benzothiazole-2-sulfonate + H2O = 2-hydroxybenzothiazole + HSO3-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1290|EC:3.13.1.- molecular_function owl:Class GO:0061829 biolink:NamedThing basal tubulobulbar complex Actin-based structures involved in establishing the blood-testis barrier of the Sertoli cell. tmpzr1t_l9r_go_relaxed.owl basal TBC dph 2017-01-15T10:42:31Z cellular_component owl:Class GO:0052593 biolink:NamedThing tryptamine:oxygen oxidoreductase (deaminating) activity Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+. tmpzr1t_l9r_go_relaxed.owl KEGG_REACTION:R02173|MetaCyc:RXN-1401|EC:1.4.3.21 molecular_function owl:Class GO:0000807 biolink:NamedThing Z chromosome The sex chromosome present in both sexes of species in which the female is the heterogametic sex. Two copies of the Z chromosome are present in each somatic cell of males and one copy is present in females. tmpzr1t_l9r_go_relaxed.owl Wikipedia:ZW_sex-determination_system cellular_component owl:Class GO:1903498 biolink:NamedThing bundle sheath cell differentiation The process in which a relatively unspecialized cell acquires the specialized features of a bundle sheath cell. tmpzr1t_l9r_go_relaxed.owl tb 2014-09-26T01:31:04Z biological_process owl:Class GO:0034682 biolink:NamedThing integrin alphav-beta1 complex An integrin complex that comprises one alphav subunit and one beta1 subunit. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB1 complex|alphav-beta1 integrin complex cellular_component owl:Class GO:0008882 biolink:NamedThing [glutamate-ammonia-ligase] adenylyltransferase activity Catalysis of the reaction: ATP + [L-glutamate:ammonia ligase (ADP-forming)] = diphosphate + adenylyl-[L-glutamate:ammonia ligase (ADP-forming)]. tmpzr1t_l9r_go_relaxed.owl ATP:[glutamate-ammonia-ligase] adenylyltransferase activity|adenosine triphosphate:glutamine synthetase adenylyltransferase activity|ATP:glutamine synthetase adenylyltransferase activity|glutamate-ammonia-ligase adenylyltransferase activity|glutamine-synthetase adenylyltransferase activity|ATP:L-glutamate:ammonia ligase (ADP-forming) adenylyltransferase activity MetaCyc:GSADENYLATION-RXN|EC:2.7.7.42|RHEA:18589 molecular_function owl:Class GO:0002485 biolink:NamedThing antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP-dependent ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in the ER following TAP-dependent transport from the cytosol. Class I here refers to classical class I molecules. tmpzr1t_l9r_go_relaxed.owl TAP-dependent antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway|TAP-dependent endogenous peptide antigen processing and presentation via MHC class I via ER pathway|endogenous peptide antigen processing and presentation via MHC class I via ER pathway, TAP-dependent biological_process owl:Class GO:0009544 biolink:NamedThing chloroplast ATP synthase complex The protein complex that catalyzes the phosphorylation of ADP to ATP in chloroplasts. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047459 biolink:NamedThing 3-aminobutyryl-CoA ammonia-lyase activity Catalysis of the reaction: (S)-3-aminobutanoyl-CoA = crotonoyl-CoA + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-3-aminobutyryl-CoA deaminase activity|L-3-aminobutyryl-CoA ammonia-lyase activity|L-3-aminobutyryl-CoA ammonia-lyase (crotonoyl-CoA-forming) MetaCyc:4.3.1.14-RXN|RHEA:10056|EC:4.3.1.14|KEGG_REACTION:R03030 molecular_function owl:Class GO:0047103 biolink:NamedThing 3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-oxidoreductase activity Catalysis of the reaction: H2O + NAD+ + 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestan-26-al = NADH + 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate. tmpzr1t_l9r_go_relaxed.owl 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al dehydrogenase activity|cholestanetriol-26-al 26-dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-dehydrogenase activity|trihydroxydeoxycoprostanal dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al:NAD+ 26-oxidoreductase activity|3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-dehydrogenase activity|THAL-NAD oxidoreductase activity|3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-oxidoreductase activity MetaCyc:1.2.1.40-RXN|RHEA:34627|EC:1.14.15.15 molecular_function owl:Class GO:0008716 biolink:NamedThing D-alanine-D-alanine ligase activity Catalysis of the reaction: 2 D-alanine + ATP = D-alanyl-D-alanine + ADP + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl alanylalanine synthetase activity|alanine:alanine ligase (ADP-forming) activity|D-Ala-D-Ala synthetase activity|D-alanylalanine synthetase activity|D-alanine:D-alanine ligase (ADP-forming)|D-alanyl-D-alanine synthetase activity RHEA:11224|EC:6.3.2.4|KEGG_REACTION:R01150|MetaCyc:DALADALALIG-RXN molecular_function owl:Class GO:0005523 biolink:NamedThing tropomyosin binding Binding to tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0035657 biolink:NamedThing eRF1 methyltransferase complex A protein complex required for the methylation of a glutamine (Gln) residue in the protein release factor eRF1. In S. cerevisiae, this complex consists of at least Trm112p and Mtq2p. tmpzr1t_l9r_go_relaxed.owl eRF1 MTase complex bf 2011-01-28T11:29:40Z cellular_component owl:Class GO:1901513 biolink:NamedThing lipo-chitin oligosaccharide transmembrane transporter activity Enables the transfer of lipo-chitin oligosaccharide from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl jl 2012-10-18T11:52:51Z molecular_function owl:Class GO:0140259 biolink:NamedThing PRC1 complex binding Binding to a PRC1 complex. tmpzr1t_l9r_go_relaxed.owl pg 2018-09-10T16:48:18Z molecular_function owl:Class GO:0002817 biolink:NamedThing negative regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria. tmpzr1t_l9r_go_relaxed.owl inhibition of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|down regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|downregulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria|down-regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria biological_process owl:Class GO:0071871 biolink:NamedThing response to epinephrine Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epinephrine stimulus. Epinephrine is a catecholamine that has the formula C9H13NO3; it is secreted by the adrenal medulla to act as a hormone, and released by certain neurons to act as a neurotransmitter active in the central nervous system. tmpzr1t_l9r_go_relaxed.owl response to adrenaline stimulus|response to epinephrine stimulus Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. mah 2010-09-13T03:27:48Z biological_process owl:Class GO:0070641 biolink:NamedThing vitamin D4 metabolic process The chemical reactions and pathways involving vitamin D4, (3S,5Z,7E)-9,10-secoergosta-5,7,10(19)-trien-3-ol. tmpzr1t_l9r_go_relaxed.owl vitamin D4 metabolism mah 2009-05-08T02:33:01Z biological_process owl:Class GO:0047986 biolink:NamedThing hydrogen-sulfide S-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + S(2-) = CoA + thioacetate. tmpzr1t_l9r_go_relaxed.owl hydrogen-sulphide S-acetyltransferase activity|acetyl-CoA:hydrogen-sulfide S-acetyltransferase activity|hydrogen-sulfide acetyltransferase activity EC:2.3.1.10|RHEA:16625|MetaCyc:HYDROGEN-SULFIDE-S-ACETYLTRANSFERASE-RXN|KEGG_REACTION:R01850 molecular_function owl:Class GO:0045027 biolink:NamedThing DNA end binding Binding to DNA ends exposed by the creation of double-strand breaks (DSBs). tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071815 biolink:NamedThing intermediate-density lipoprotein particle binding Binding to a intermediate-density lipoprotein particle, a triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. tmpzr1t_l9r_go_relaxed.owl intermediate-density lipoprotein binding|IDL binding mah 2010-09-06T04:28:35Z molecular_function owl:Class GO:0043287 biolink:NamedThing poly(3-hydroxyalkanoate) binding Binding to a poly(3-hydroxyalkanoate), a polyester of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria. tmpzr1t_l9r_go_relaxed.owl PHA binding molecular_function owl:Class GO:0106324 biolink:NamedThing (S)-limonene 1,2-monooxygenase NADH activity Catalysis of the reaction: (4S)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4S)-limonene-1,2-epoxide. tmpzr1t_l9r_go_relaxed.owl RHEA:26089 hjd 2020-09-23T15:35:58Z molecular_function owl:Class GO:0097023 biolink:NamedThing fructose 6-phosphate aldolase activity Catalysis of the reaction: D-fructose-6-phosphate = dihydroxyacetone + D-glyceraldehyde-3-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:28002 pr 2011-03-29T04:54:05Z molecular_function owl:Class GO:0102170 biolink:NamedThing 5-epi-aristolochene-1,3-dihydroxylase activity Catalysis of the reaction: (+)-5-epi-aristolochene + 2 NADPH + 2 H+ + 2 O2 <=> capsidiol + 2 NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11908|EC:1.14.14.149|RHEA:28226 molecular_function owl:Class GO:0005588 biolink:NamedThing collagen type V trimer A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0035910 biolink:NamedThing ascending aorta morphogenesis The process in which the anatomical structures of the ascending aorta are generated and organized. The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta. In a two-pass circulatory system blood passes twice through the heart to supply the body once. tmpzr1t_l9r_go_relaxed.owl bf 2011-06-24T11:14:52Z biological_process owl:Class GO:0090705 biolink:NamedThing trichome papilla A plant cell papilla that is part of a trichome cell. tmpzr1t_l9r_go_relaxed.owl Part of trichome cell (PO:0008030). tb 2016-09-26T12:49:36Z cellular_component owl:Class GO:0034807 biolink:NamedThing 4,5-dihydroxybenzo(a)pyrene methyltransferase activity Catalysis of the reaction: 4,5-dihydroxybenzo(a)pyrene + C1 unit = hydroxymethoxybenzo(a)pyrene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1131 molecular_function owl:Class GO:0051430 biolink:NamedThing corticotropin-releasing hormone receptor 1 binding Binding to a corticotropin-releasing hormone receptor 1 (CRHR1). CRHR1 is the major subtype in the pituitary corticotroph, and mediates the stimulatory actions of corticotropin-releasing hormone on corticotropin hormone secretion. CRHR1 are also located in cortical areas of the brain, cerebellum and limbic system. tmpzr1t_l9r_go_relaxed.owl type 1 corticotropin releasing factor receptor ligand|type 1 corticotropin-releasing factor receptor binding|CRHR1 binding|type 1 corticotropin releasing factor receptor binding GO:0031743 molecular_function owl:Class GO:0052894 biolink:NamedThing norspermine:oxygen oxidoreductase activity Catalysis of the reaction: norspermine + oxygen + H2O = norspermidine + 3-aminopropanal + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl norspermine oxidase activity MetaCyc:RXN-10464|EC:1.5.3.16 molecular_function owl:Class GO:0039673 biolink:NamedThing evasion by virus of host dendritic cell activity Any process by which a virus avoids the effects mediated by the host organism's dendritic cells. tmpzr1t_l9r_go_relaxed.owl modulation of host dendritic cell activity by virus|impairing dendritic cell function by virus|evasion by virus of host dendritic cell response bf 2013-09-25T11:18:51Z biological_process owl:Class GO:0097514 biolink:NamedThing sexual spore wall A specialized envelope lying outside the cell membrane of a spore derived from a product of meiosis. tmpzr1t_l9r_go_relaxed.owl pr 2013-10-16T15:10:32Z cellular_component owl:Class GO:0033786 biolink:NamedThing heptose-1-phosphate adenylyltransferase activity Catalysis of the reaction: D-beta-D-heptose-1-phosphate + ATP = ADP-D-glycero-D-manno-heptose. tmpzr1t_l9r_go_relaxed.owl heptose 1-phosphate adenyltransferase activity|D-beta-D-heptose 1-phosphate adenylyltransferase activity RHEA:27465|MetaCyc:RXN0-4342 molecular_function owl:Class GO:0071666 biolink:NamedThing Slit-Robo signaling complex A protein-carbohydrate complex that consists of a transmembrane roundabout (Robo) receptor, an extracellular Slit ligand and heparin/heparan sulfate. tmpzr1t_l9r_go_relaxed.owl Slit-Robo signalling complex mah 2010-02-12T03:35:28Z cellular_component owl:Class GO:0102423 biolink:NamedThing (+)-sesaminol 2-O-glucosyltransferase activity Catalysis of the reaction: (+)-sesaminol + UDP-alpha-D-glucose <=> (+)-sesaminol 2-O-beta-D-glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13818 molecular_function owl:Class GO:0106268 biolink:NamedThing 3,5-dichloro-THPH methyl transferase activity Catalysis of the reaction: (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one + S-adenosyl-L-methionine = 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one + H+ + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl DIF-1 syntase RHEA:48396 hjd 2020-06-02T18:25:03Z molecular_function owl:Class GO:0047615 biolink:NamedThing actinomycin lactonase activity Catalysis of the reaction: actinomycin + H2O = actinomycinic monolactone. tmpzr1t_l9r_go_relaxed.owl actinomycin lactonohydrolase activity MetaCyc:ACTINOMYCIN-LACTONASE-RXN|EC:3.1.1.39 molecular_function owl:Class GO:0016492 biolink:NamedThing G protein-coupled neurotensin receptor activity Combining with the tridecapeptide neurotensin to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state. tmpzr1t_l9r_go_relaxed.owl neurotensin receptor activity, G protein coupled|G-protein coupled neurotensin receptor activity|neurotensin receptor activity, G-protein coupled|G protein coupled neurotensin receptor activity molecular_function owl:Class GO:0044067 biolink:NamedThing modification by symbiont of host intercellular junctions The process in which a symbiont organism effects a change in the structure or function of its host intercellular junction, a specialized region of connection between two cells. tmpzr1t_l9r_go_relaxed.owl modification of host intercellular junctions by symbiont biological_process owl:Class GO:0070852 biolink:NamedThing cell body fiber A neuron projection that is found in unipolar neurons and corresponds to the region between the cell body and the point at which the single projection branches. tmpzr1t_l9r_go_relaxed.owl cell body fibre|primary neurite mah 2009-08-11T04:38:53Z cellular_component owl:Class GO:0047054 biolink:NamedThing berbamunine synthase activity Catalysis of the reaction: (S)-N-methylcoclaurine + (R)-N-methylcoclaurine + [reduced NADPH--hemoprotein reductase] + O2 <=> berbamunine + [oxidized NADPH--hemoprotein reductase] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl heme-thiolate https://github.com/geneontology/go-ontology/issues/21133 RHEA:23576|EC:1.14.19.66|MetaCyc:1.1.3.34-RXN molecular_function owl:Class GO:0042256 biolink:NamedThing mature ribosome assembly The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional ribosome. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018491 biolink:NamedThing 2-oxobutyrate synthase activity Catalysis of the reaction: 2-oxobutanoate + CoA + oxidized ferredoxin = propanoyl-CoA + CO2 + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 2-oxobutyrate-ferredoxin oxidoreductase activity|alpha-ketobutyrate synthase activity|alpha-ketobutyrate-ferredoxin oxidoreductase activity|2-oxobutanoate:ferredoxin 2-oxidoreductase (CoA-propionylating)|2-ketobutyrate synthase activity UM-BBD_reactionID:r0358|RHEA:32135|MetaCyc:2-OXOBUTYRATE-SYNTHASE-RXN molecular_function owl:Class GO:0061788 biolink:NamedThing EGF repeat binding Binding to Epidermal Growth Factor (EGF) repeats. tmpzr1t_l9r_go_relaxed.owl Epidermal Growth Factor repeat binding|Epidermal growth factor domain binding dph 2016-09-08T15:22:28Z molecular_function owl:Class GO:0006385 biolink:NamedThing transcription elongation from RNA polymerase III promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl RNA elongation from Pol III promoter|RNA polymerase III transcription elongation factor activity biological_process owl:Class GO:0102446 biolink:NamedThing rhamnetin 3-O-methyltransferase activity Catalysis of the reaction: rhamnetin + S-adenosyl-L-methionine <=> 3',4',5-trihydroxy-3,7-dimethoxyflavone + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13932 molecular_function owl:Class GO:0072688 biolink:NamedThing SHREC complex localization Any process in which a SHREC complex is transported to, or maintained in, a specific location. tmpzr1t_l9r_go_relaxed.owl SHREC complex localisation|establishment and maintenance of SHREC complex localization mah 2011-07-20T12:51:49Z biological_process owl:Class GO:0018789 biolink:NamedThing cyclamate sulfohydrolase activity Catalysis of the reaction: cyclohexylsulfamate + H(2)O = cyclohexylamine + sulfate. tmpzr1t_l9r_go_relaxed.owl cyclamate sulfamatase activity|cyclamate sulphohydrolase activity|cyclamate sulfamidase activity|cyclohexylsulfamate sulfamidase activity|cyclohexylsulfamate sulfohydrolase activity MetaCyc:CYCLAMATE-SULFOHYDROLASE-RXN|UM-BBD_reactionID:r0755|EC:3.10.1.2|RHEA:18481|KEGG_REACTION:R02564 molecular_function owl:Class GO:0004699 biolink:NamedThing calcium-independent protein kinase C activity Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. This reaction requires diacylglycerol but not calcium. tmpzr1t_l9r_go_relaxed.owl calcium-independent PKC activity|novel protein kinase C activity Reactome:R-HSA-5607740 molecular_function owl:Class GO:0052806 biolink:NamedThing sulfite reductase (coenzyme F420) activity Catalysis of the reaction: sulfite + 3 1,5-dihydrocoenzyme F420 = hydrogen sulfide + 3 H2O + 3 coenzyme F420. 1,5-dihydrocoenzyme F420 is also known as reduced coenzyme F420. tmpzr1t_l9r_go_relaxed.owl sulfite:reduced coenzyme F420 reductase activity|coenzyme F420-dependent sulfite reductase activity|coenzyme F420-sulfite reductase activity|hydrogen-sulfide:coenzyme F420 oxidoreductase activity ai 2011-09-22T04:08:13Z molecular_function owl:Class GO:0019386 biolink:NamedThing methanogenesis, from carbon dioxide The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other compounds, including carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl methane biosynthesis from carbon dioxide|methane biosynthetic process from carbon dioxide MetaCyc:METHANOGENESIS-PWY biological_process owl:Class GO:1990589 biolink:NamedThing ATF4-CREB1 transcription factor complex Transcription factor complex consisting of ATF4 and CREB1 subunits that is capable of binding to cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3') as part of the positive regulation of transcription. Regulatory targets include the GRP78 (HSPA5) promoter in humans, whose activation by this complex is part of the ER stress response pathway. tmpzr1t_l9r_go_relaxed.owl bhm 2014-12-15T14:22:44Z cellular_component owl:Class GO:0007220 biolink:NamedThing Notch receptor processing The series of successive proteolytic cleavages of the Notch protein, which result in an active form of the receptor. tmpzr1t_l9r_go_relaxed.owl N receptor processing biological_process owl:Class GO:0030270 biolink:NamedThing formylmethanofuran-tetrahydromethanopterin N-formyltransferase activity Catalysis of the reaction: 5,6,7,8-tetrahydromethanopterin + N-formylmethanofuran + H(+) = N(5)-formyl-5,6,7,8-tetrahydromethanopterin + methanofuran. tmpzr1t_l9r_go_relaxed.owl formylmethanofuran:5,6,7,8-tetrahydromethanopterin N5-formyltransferase activity|FTR|formylmethanofuran:5,6,7,8-tetrahydromethanopterin 5-formyltransferase activity|formylmethanofuran-tetrahydromethanopterin formyltransferase activity|N-formylmethanofuran(CHO-MFR):tetrahydromethanopterin(H4MPT) formyltransferase activity|formylmethanofuran:tetrahydromethanopterin formyltransferase activity MetaCyc:2.3.1.101-RXN|KEGG_REACTION:R03390|UM-BBD_reactionID:r0346|RHEA:18061|EC:2.3.1.101 GO:0018714 molecular_function owl:Class GO:0102343 biolink:NamedThing 3-hydroxy-arachidoyl-CoA dehydratase activity Catalysis of the reaction: (R)-3-hydroxyicosanoyl-CoA <=> trans-2-icosenoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.134|MetaCyc:RXN-13302 molecular_function owl:Class GO:0004034 biolink:NamedThing aldose 1-epimerase activity Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose. tmpzr1t_l9r_go_relaxed.owl mutarotase activity|aldose mutarotase activity RHEA:10264|MetaCyc:ALDOSE-1-EPIMERASE-RXN|EC:5.1.3.3 molecular_function owl:Class GO:1990226 biolink:NamedThing histone methyltransferase binding Binding to a histone methyltransferase enzyme. tmpzr1t_l9r_go_relaxed.owl pr 2013-11-07T11:59:58Z molecular_function owl:Class GO:0043429 biolink:NamedThing 2-nonaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity Catalysis of the reaction: 2-nonaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl 2-nonaprenyl-6-methoxy-1,4-benzoquinone methylase activity Note that the polyprenyl sidechain substrate for these methyltransferases varies in length between species, for example, 6 units in S. cerevisiae, 8 units in E. coli and 10 units in G. suboxidans. Where the length of the substrate polyprenyl chain is unknown, the term '2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity ; GO:0008425' should be used. molecular_function owl:Class GO:0120095 biolink:NamedThing vacuole-isolation membrane contact site An organelle membrane contact site formed at the junction of the vacuolar membrane and the isolation membrane or phagophore in response to starvation or other stresses, leading to the formation of the autophagosome. tmpzr1t_l9r_go_relaxed.owl VICS|vacuole-IM contact site|vacuole-phagophore contact site krc 2017-09-18T20:01:35Z cellular_component owl:Class GO:0071084 biolink:NamedThing alpha2-beta1 integrin-CD47 complex A protein complex that consists of an alpha2-beta1 integrin complex bound to the cell surface protein CD47. tmpzr1t_l9r_go_relaxed.owl ITGA2-ITGB1-CD47 complex mah 2009-11-06T04:44:35Z cellular_component owl:Class GO:0010180 biolink:NamedThing thioglucosidase binding Binding to a thioglucosidase enzyme. tmpzr1t_l9r_go_relaxed.owl myrosinase binding molecular_function owl:Class GO:0009326 biolink:NamedThing formate dehydrogenase complex An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2). tmpzr1t_l9r_go_relaxed.owl EC:1.17.1.9 cellular_component owl:Class GO:0050344 biolink:NamedThing trans-cinnamate 2-monooxygenase activity Catalysis of the reaction: trans-cinnamate + H(+) + NADPH + O(2) = 2-coumarate + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl trans-cinnamate,NADPH:oxygen oxidoreductase (2-hydroxylating)|trans-cinnamic acid 2-hydroxylase activity|cinnamic acid 2-hydroxylase activity|cinnamate 2-hydroxylase activity|cinnamic 2-hydroxylase activity|cinnamate 2-monooxygenase activity MetaCyc:TRANS-CINNAMATE-2-MONOOXYGENASE-RXN|EC:1.14.13.14|RHEA:10956|KEGG_REACTION:R02254 molecular_function owl:Class GO:0002305 biolink:NamedThing CD8-positive, gamma-delta intraepithelial T cell differentiation The process in which a precursor cell type acquires the specialized features of a CD8-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways. tmpzr1t_l9r_go_relaxed.owl CD8-positive, gamma-delta intraepithelial T lymphocyte differentiation|CD8-positive, gamma-delta intraepithelial T-cell differentiation|CD8-positive, gamma-delta intraepithelial T cell development|CD8-positive, gamma-delta intraepithelial T-lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0015861 biolink:NamedThing cytidine transport The directed movement of cytidine, cytosine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0033114 biolink:NamedThing cyanelle thylakoid lumen The volume enclosed by a cyanelle thylakoid membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0090531 biolink:NamedThing L-ascorbic acid biosynthetic process via GDP-alpha-D-mannose The chemical reactions and pathways resulting in the formation of L-ascorbic acid via the intermediate GDP-alpha-D-mannose. tmpzr1t_l9r_go_relaxed.owl L-ascorbic acid biosynthesis via GDP-alpha-D-mannose|Smirnoff-Wheeler's pathway BioCyc:PWY-882 tb 2013-02-06T15:31:01Z biological_process owl:Class GO:1903701 biolink:NamedThing substantia propria of cornea development The process whose specific outcome is the progression of a substantia propria of cornea over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl stroma of cornea development|substantia propria development|corneal stroma development cls 2014-12-03T13:12:09Z biological_process owl:Class GO:0034528 biolink:NamedThing 2-carboxy-2-hydroxy-8-carboxychromene isomerase activity Catalysis of the reaction: 2-carboxy-2-hydroxy-8-carboxychromene = 2-hydroxy-3-carboxybenzalpyruvate. tmpzr1t_l9r_go_relaxed.owl EC:5.3.99.-|UM-BBD_reactionID:r0791 molecular_function owl:Class GO:0030445 biolink:NamedThing yeast-form cell wall The wall surrounding a cell of a dimorphic fungus growing in the single-cell budding yeast form, in contrast to the filamentous or hyphal form. tmpzr1t_l9r_go_relaxed.owl See also the Fungal Anatomy Ontology term 'vegetative cell ; FAO:0000032'. cellular_component owl:Class GO:0004574 biolink:NamedThing oligo-1,6-glucosidase activity Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in some oligosaccharides produced from starch and glycogen by alpha-amylase, and in isomaltose. Releases a free alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl limit dextrinase|oligosaccharide alpha-1,6-glucohydrolase activity|alpha-limit dextrinase activity|exo-oligo-1,6-glucosidase activity|oligosaccharide alpha-1,6-glucosidase activity|dextrin 6alpha-glucanohydrolase activity|alpha-methylglucosidase activity|sucrase-isomaltase activity|dextrin 6-glucanohydrolase activity|isomaltase activity EC:3.2.1.10|MetaCyc:3.2.1.10-RXN molecular_function owl:Class GO:0089713 biolink:NamedThing Cbf1-Met4-Met28 complex A heteromeric complex consisting of Cbf1 and basic leucine zipper (bZIP) containing transcriptional activators, Met4 and Met28, that forms over the sequence TCACGTG in the upstream activating sequence (UAS) of genes involved in sulfur amino acid metabolism, resulting in their transcriptional activation. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0070037 biolink:NamedThing rRNA (pseudouridine) methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-6790906 molecular_function owl:Class GO:0030269 biolink:NamedThing tetrahydromethanopterin S-methyltransferase activity Catalysis of the reaction: 5-methyltetrahydromethanopterin + coenzyme M = 5,6,7,8-tetrahydromethanopterin + methyl-coenzyme M. 2-(methylthio)ethanesulfonate is also known as methyl-CoM. tmpzr1t_l9r_go_relaxed.owl N5-methyltetrahydromethanopterin--coenzyme M methyltransferase activity|5-methyl-5,6,7,8-tetrahydromethanopterin:2-mercaptoethanesulfonate 2-methyltransferase activity|N(5)-methyltetrahydromethanopterin--coenzyme M methyltransferase activity|tetrahydromethanopterin methyltransferase activity UM-BBD_reactionID:r0355|KEGG_REACTION:R04347|MetaCyc:2.1.1.86-RXN|EC:2.1.1.86|RHEA:53492 GO:0018709 molecular_function owl:Class GO:0015433 biolink:NamedThing ABC-type peptide antigen transporter activity Catalysis of the reaction: peptide antigen(in) + ATP = peptide antigen(out) + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl major histocompatibility peptide transporter activity|peptide antigen ABC transporter|peptide antigen transporter activity|ATP-dependent peptide antigen transmembrane transporter activity|ATPase-coupled peptide antigen transmembrane transporter activity|peptide antigen-transporting ATPase activity Reactome:R-HSA-983144|TC:3.A.1.209.1|Reactome:R-HSA-1236949 molecular_function owl:Class GO:0140509 biolink:NamedThing epithelium-like organization The organization of a polarized cell layer during morphogenesis in protozoa; an example is found during culmination in D. discoideum, involving alpha and beta catenins. tmpzr1t_l9r_go_relaxed.owl pg 2020-08-28T07:29:53Z biological_process owl:Class GO:0043896 biolink:NamedThing glucan 1,6-alpha-glucosidase activity Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in (1->6)-alpha-D-glucans and derived oligosaccharides. tmpzr1t_l9r_go_relaxed.owl glucodextrinase|exo-1,6-beta-glucosidase|glucan alpha-1,6-D-glucohydrolase activity|exo-1,6-alpha-glucosidase activity|glucodextranase activity|glucan-1,6-alpha-glucosidase activity MetaCyc:3.2.1.70-RXN|EC:3.2.1.70 molecular_function owl:Class GO:0005109 biolink:NamedThing frizzled binding Binding to a frizzled (fz) receptor. tmpzr1t_l9r_go_relaxed.owl frizzled-2 ligand|fz ligand|frizzled ligand|frizzled-2 binding|fz2 binding|fz2 ligand|fz binding GO:0005110 molecular_function owl:Class GO:0003189 biolink:NamedThing aortic valve formation The developmental process pertaining to the initial formation of the aortic valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-08T01:05:44Z biological_process owl:Class GO:0052872 biolink:NamedThing tocotrienol omega-hydroxylase activity Catalysis of the reaction: tocotrienol + O2 + NADPH + H+ = 13'-hydroxy-tocotrienol + NADP+ + H2O . tmpzr1t_l9r_go_relaxed.owl tocotrienol 13-hydroxylase activity EC:1.14.13.- ai 2012-01-30T03:07:27Z molecular_function owl:Class GO:0140068 biolink:NamedThing histone crotonyltransferase activity Catalysis of the reaction: crotonyl-CoA + histone = CoA + crotonyl-histone. tmpzr1t_l9r_go_relaxed.owl pg 2017-07-20T16:55:16Z molecular_function owl:Class GO:0047570 biolink:NamedThing 3-oxoadipate enol-lactonase activity Catalysis of the reaction: 3-oxoadipate enol-lactone + H2O = 3-oxoadipate. tmpzr1t_l9r_go_relaxed.owl beta-ketoadipic enol-lactone hydrolase activity|3-ketoadipate enol-lactonase activity|4-carboxymethylbut-3-en-4-olide enol-lactonohydrolase activity|3-oxoadipic enol-lactone hydrolase activity|beta-ketoadipate enol-lactone hydrolase activity|carboxymethylbutenolide lactonase activity MetaCyc:3-OXOADIPATE-ENOL-LACTONASE-RXN|RHEA:10184|EC:3.1.1.24 molecular_function owl:Class GO:0018615 biolink:NamedThing 2-indanone monooxygenase activity Catalysis of the reaction: 2-indanone + NADPH + 1/2 O2 = NADP+ + 3-isochromanone. tmpzr1t_l9r_go_relaxed.owl EC:1.14.12.-|UM-BBD_reactionID:r0424 molecular_function owl:Class GO:0050062 biolink:NamedThing long-chain-fatty-acyl-CoA reductase activity Catalysis of the reaction: a long-chain aldehyde + CoA + NADP+ = a long-chain acyl-CoA + NADPH. tmpzr1t_l9r_go_relaxed.owl acyl coenzyme A reductase activity|long-chain fatty acyl-CoA reductase activity|long-chain-aldehyde:NADP+ oxidoreductase (acyl-CoA-forming)|long-chain fatty acyl CoA reductase activity EC:1.2.1.50|MetaCyc:LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|RHEA:15437 molecular_function owl:Class GO:0002105 biolink:NamedThing endonucleolytic cleaveage between LSU-rRNA and 4.5S rRNA of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) Endonucleolytic cleavage between the LSU-rRNA and the 4.5S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030773 biolink:NamedThing 6-hydroxymellein O-methyltransferase activity Catalysis of the reaction: 6-hydroxymellein + S-adenosyl-L-methionine = 6-methoxymellein + S-adenosyl-L-homocysteine + H(+). tmpzr1t_l9r_go_relaxed.owl 6-hydroxymellein methyltransferase activity|S-adenosyl-L-methionine:6-hydroxymellein 6-O-methyltransferase activity RHEA:15201|MetaCyc:6-HYDROXYMELLEIN-O-METHYLTRANSFERASE-RXN|KEGG_REACTION:R03934|EC:2.1.1.108 molecular_function owl:Class GO:0030289 biolink:NamedThing protein phosphatase 4 complex A protein serine/threonine phosphatase complex formed by the catalytic subunit of protein phosphatase 4 plus one or more regulatory subunits. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0002528 biolink:NamedThing regulation of vascular permeability involved in acute inflammatory response Any process that modulates the extent to which blood vessels can be pervaded by fluid contributing to an acute inflammatory response. tmpzr1t_l9r_go_relaxed.owl regulation of vascular permeability during acute inflammatory response biological_process owl:Class GO:0003114 biolink:NamedThing positive regulation of heart rate by circulating norepinephrine The process in which the secretion of norepinephrine into the bloodstream increases the rate of heart muscle contraction. tmpzr1t_l9r_go_relaxed.owl positive regulation of heart rate by circulating noradrenaline biological_process owl:Class GO:0102282 biolink:NamedThing 3-ketodihydrosphinganine (C18) reductase activity Catalysis of the reaction: NAD(1-) + a sphinganine <=> 3-dehydrosphinganinium(1+) + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12641 molecular_function owl:Class GO:0036299 biolink:NamedThing non-recombinational interstrand cross-link repair Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that does not involve homologous DNA recombination. tmpzr1t_l9r_go_relaxed.owl recombination-independent ICL repair|recombination-independent interstrand cross-link repair bf 2012-08-07T11:11:59Z biological_process owl:Class GO:0140575 biolink:NamedThing transmembrane monodehydroascorbate reductase activity Oxidation of monodehydroascorbate outside of a membrane coupled to the reduction of L-ascorbate to monodehydro-L-ascorbate radical on the inner side of a membrane. Electrons get transferred across the membrane during the reaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20602 RHEA:66524 pg 2021-01-07T16:20:04Z molecular_function owl:Class GO:0106143 biolink:NamedThing tRNA (m7G46) methyltransferase complex A protein complex involved in the catalysis of the formation of the modified nucleotide 7-methylguanine (at position 46 in certain tRNAs, such as tRNA(phe) and tRNA(met). In yeast, it is a heterotetramer of two subunits, Trm8 (catalytic) and Trm82 (WD repeat). tmpzr1t_l9r_go_relaxed.owl tRNA m7G methylation complex|Trm8-Trm82 complex|tRNA (m7G46) methyltransferase hjd 2018-09-07T14:53:29Z cellular_component owl:Class GO:0000405 biolink:NamedThing bubble DNA binding Binding to DNA segment that contains a bubble. A bubble occurs when DNA contains a region of unpaired, single-stranded DNA flanked on both sides by regions of paired, double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071460 biolink:NamedThing cellular response to cell-matrix adhesion Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cell-matrix adhesion. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-17T02:25:45Z biological_process owl:Class GO:0106237 biolink:NamedThing arachidonate 12(R)-lipoxygenase activity Catalysis of the reaction: arachidonate + O(2)=(5Z,8Z,10E,12R,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate. tmpzr1t_l9r_go_relaxed.owl RHEA:41336 hjd 2019-12-18T21:03:02Z molecular_function owl:Class GO:0050240 biolink:NamedThing pyrogallol 1,2-oxygenase activity Catalysis of the reaction: O(2) + pyrogallol = (Z)-5-oxohex-2-enedioate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl pyrogallol 1,2-dioxygenase activity|1,2,3-trihydroxybenzene:oxygen 1,2-oxidoreductase (decyclizing) EC:1.13.11.35|MetaCyc:PYROGALLOL-12-OXYGENASE-RXN|KEGG_REACTION:R03246|RHEA:19673 molecular_function owl:Class GO:0050177 biolink:NamedThing phenylpyruvate decarboxylase activity Catalysis of the reaction: phenylpyruvate = phenylacetaldehyde + CO2. tmpzr1t_l9r_go_relaxed.owl phenylpyruvate carboxy-lyase activity|phenylpyruvate carboxy-lyase (phenylacetaldehyde-forming) MetaCyc:PHENYLPYRUVATE-DECARBOXYLASE-RXN|EC:4.1.1.43|RHEA:14185 molecular_function owl:Class GO:0102906 biolink:NamedThing 7-epi-alpha-selinene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) <=> (-)-7-epi-alpha-selinene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8609|EC:4.2.3.86|RHEA:30383 molecular_function owl:Class GO:0045018 biolink:NamedThing retrograde transport, vacuole to Golgi The directed movement of substances from the vacuole to the trans-Golgi network; this occurs in yeast via the prevacuolar/endosomal compartment. tmpzr1t_l9r_go_relaxed.owl retrograde transport from the vacuole biological_process owl:Class GO:0033211 biolink:NamedThing adiponectin-activated signaling pathway A series of molecular signals initiated by the binding of adiponectin to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. tmpzr1t_l9r_go_relaxed.owl adiponectin-mediated signaling pathway|adipocytokine signaling pathway|adiponectin-mediated signalling pathway biological_process owl:Class GO:0033430 biolink:NamedThing CGC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes a CGC codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA Note that in the standard genetic code, CGC codes for arginine. molecular_function owl:Class GO:0006877 biolink:NamedThing cellular cobalt ion homeostasis Any process involved in the maintenance of an internal steady state of cobalt ions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cobalt homeostasis biological_process owl:Class GO:0047536 biolink:NamedThing 2-aminoadipate transaminase activity Catalysis of the reaction: 2-oxoglutarate + L-2-aminoadipate = 2-oxoadipate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl alpha-aminoadipate aminotransferase activity|2-aminoadipate aminotransferase activity|L-2-aminoadipate:2-oxoglutarate aminotransferase activity|2-aminoadipic aminotransferase activity|glutamic-ketoadipic transaminase activity|glutamate-alpha-ketoadipate transaminase activity RHEA:12601|Reactome:R-HSA-508561|EC:2.6.1.39|Reactome:R-HSA-70952|KEGG_REACTION:R01939|MetaCyc:2-AMINOADIPATE-AMINOTRANSFERASE-RXN molecular_function owl:Class GO:0047071 biolink:NamedThing 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase activity Catalysis of the reaction: 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + O(2) = 3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1(10),2-dien-4-oate + H(+). tmpzr1t_l9r_go_relaxed.owl 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione:oxygen 4,5-oxidoreductase (decyclizing)|steroid 4,5-dioxygenase activity|3-alkylcatechol 2,3-dioxygenase activity MetaCyc:1.13.11.25-RXN|RHEA:21352|UM-BBD_reactionID:r1151|KEGG_REACTION:R04597|EC:1.13.11.25 molecular_function owl:Class GO:0050064 biolink:NamedThing luteolin 7-O-glucuronosyltransferase activity Catalysis of the reaction: luteolin + UDP-alpha-D-glucuronate = luteolin 7-O-beta-D-glucosiduronate + UDP. tmpzr1t_l9r_go_relaxed.owl luteolin 7-O-glucoronosyltransferase activity|uridine diphosphoglucuronate-luteolin 7-O-glucuronosyltransferase activity|UDPglucuronate:luteolin 7-O-glucuronosyltransferase activity|UDP-glucuronate:luteolin 7-O-glucuronosyltransferase activity|LGT MetaCyc:LUTEOLIN-7-O-GLUCORONOSYLTRANSFERASE-RXN|KEGG_REACTION:R03589|RHEA:10568|EC:2.4.1.189 molecular_function owl:Class GO:1901761 biolink:NamedThing oxytetracycline metabolic process The chemical reactions and pathways involving oxytetracycline. tmpzr1t_l9r_go_relaxed.owl oxytetracycline metabolism yaf 2013-01-15T09:52:50Z biological_process owl:Class GO:0102426 biolink:NamedThing myricetin-3-O-glucoside 1,6-glucosyltransferase activity Catalysis of the reaction: myricetin 3-O-beta-D-glucopyranoside + UDP-alpha-D-glucose <=> myricetin 3-O-gentiobioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13823 molecular_function owl:Class GO:0050441 biolink:NamedThing 3-ethylmalate synthase activity Catalysis of the reaction: butanoyl-CoA + glyoxylate + H(2)O = 3-ethylmalate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl 3-ethylmalate glyoxylate-lyase (CoA-butanoylating) activity|2-ethyl-3-hydroxybutanedioate synthase activity|butanoyl-CoA:glyoxylate C-butanoyltransferase (thioester-hydrolysing, 1-carboxypropyl-forming) EC:2.3.3.7|RHEA:10500|MetaCyc:3-ETHYLMALATE-SYNTHASE-RXN|KEGG_REACTION:R01180 molecular_function owl:Class GO:0090067 biolink:NamedThing regulation of thalamus size Any process that modulates the size of the thalamus. The thalamus is a part of the diencephalon that is composed of the dorsal thalamus and the ventral thalamus. tmpzr1t_l9r_go_relaxed.owl tb 2009-09-02T11:03:03Z biological_process owl:Class GO:0036291 biolink:NamedThing protein cis-autophosphorylation The phosphorylation by a protein of one or more of its own amino acid residues. tmpzr1t_l9r_go_relaxed.owl cis-autophosphorylation bf 2012-07-18T10:27:06Z biological_process owl:Class GO:0050138 biolink:NamedThing nicotinate dehydrogenase activity Catalysis of the reaction: H(2)O + NADP(+) + nicotinate = 6-hydroxynicotinate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl nicotinate hydroxylase activity|nicotinate:NADP+ 6-oxidoreductase (hydroxylating)|nicotinic acid hydroxylase activity MetaCyc:RXN-7637|KEGG_REACTION:R01720|EC:1.17.1.5|MetaCyc:NICOTINATE-DEHYDROGENASE-RXN|RHEA:12236 molecular_function owl:Class GO:0034432 biolink:NamedThing bis(5'-adenosyl)-pentaphosphatase activity Catalysis of the reaction: P1-P6-bis(5'-adenosyl) pentaphosphate + H2O = AMP + adenosine 5'-tetraphosphate. tmpzr1t_l9r_go_relaxed.owl Ap5a pyrophosphohydrolase activity|AP-5-A hydrolase activity|AP5A hydrolase activity|diadenosine 5',5'''-P1,P6-pentaphosphate hydrolase activity|AP(5)A hydrolase activity molecular_function owl:Class GO:0140623 biolink:NamedThing type I pilus assembly The assembly from its constituent parts of a type I pilus. tmpzr1t_l9r_go_relaxed.owl type I fimbrium assembly|type I fimbria assembly|type I fimbrial biogenesis|type I fimbrial assembly|T1P assembly|type I fimbriae biogenesis|type 1 pilus biogenesis|type I fimbrium biogenesis|type I fimbria biogenesis|type I fimbriae assembly https://github.com/geneontology/go-ontology/issues/14469 pg 2021-03-10T12:23:20Z biological_process owl:Class GO:0000286 biolink:NamedThing alanine dehydrogenase activity Catalysis of the reaction: L-alanine + H2O + NAD+ = pyruvate + NH3 + NADH + H(+). tmpzr1t_l9r_go_relaxed.owl NAD-dependent alanine dehydrogenase activity|NAD-linked alanine dehydrogenase activity|alanine oxidoreductase activity|L-alanine dehydrogenase activity|L-alanine:NAD+ oxidoreductase (deaminating)|AlaDH|alpha-alanine dehydrogenase activity|NADH-dependent alanine dehydrogenase activity RHEA:18405|EC:1.4.1.1|MetaCyc:ALANINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:0044204 biolink:NamedThing host cell nuclear matrix The dense fibrillar network lying on the inner side of the host nuclear membrane. tmpzr1t_l9r_go_relaxed.owl jl 2009-10-21T11:15:36Z cellular_component owl:Class GO:0043129 biolink:NamedThing surfactant homeostasis Any process involved in the maintenance of a steady-state level of the surface-active lipoprotein mixture which coats the alveoli. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004800 biolink:NamedThing thyroxine 5'-deiodinase activity Catalysis of the reaction: 3,5,3'-L-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + donor-H2. tmpzr1t_l9r_go_relaxed.owl acceptor:3,5,3'-triiodo-L-thyronine oxidoreductase (iodinating)|thyroxine deiodinase activity|outer ring-deiodinating pathway|diiodothyronine 5'-deiodinase activity|type II iodothyronine deiodinase activity|thyroxine 5' deiodinase activity|type I iodothyronine deiodinase activity|iodothyronine outer ring monodeiodinase activity|iodothyronine 5'-deiodinase activity|L-thyroxine iodohydrolase (reducing) activity Reactome:R-HSA-350869|EC:1.21.99.4|MetaCyc:THYROXINE-DEIODINASE-RXN|Reactome:R-HSA-209772|RHEA:19745 Note that this was EC:3.8.1.4. molecular_function owl:Class GO:0047328 biolink:NamedThing acyl-phosphate-hexose phosphotransferase activity Catalysis of the reaction: D-hexose + acyl phosphate = D-hexose phosphate + an acid. tmpzr1t_l9r_go_relaxed.owl hexose phosphate:hexose phosphotransferase activity|acyl-phosphate:D-hexose phosphotransferase activity EC:2.7.1.61|MetaCyc:2.7.1.61-RXN|RHEA:13077 molecular_function owl:Class GO:0018127 biolink:NamedThing NAD(P)-serine ADP-ribosyltransferase activity Catalysis of the reaction: NAD(P)+ + L-serine = nicotinamide + N2-(ADP-D-ribosyl)-L-serine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034892 biolink:NamedThing endosulfan lactone lactonase activity Catalysis of the reaction: endosulfan lactone + H2O = endosulfan hydroxycarboxylate + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1389 molecular_function owl:Class GO:0050524 biolink:NamedThing coenzyme-B sulfoethylthiotransferase activity Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB. tmpzr1t_l9r_go_relaxed.owl methyl-coenzyme-M reductase activity|2-(methylthio)ethanesulfonate:N-(7-thioheptanoyl)-3-O-phosphothreonine S-(2-sulfoethyl)thiotransferase activity|methyl-CoM reductase activity|coenzyme-B sulphoethylthiotransferase activity|methyl coenzyme M reductase activity RHEA:12532|MetaCyc:METHYL-COM-HTP-RXN|KEGG_REACTION:R04541|UM-BBD_reactionID:r0356|EC:2.8.4.1 GO:0018552 molecular_function owl:Class GO:0022828 biolink:NamedThing phosphorylation-gated channel activity Enables the transmembrane transfer of a solute by a channel that opens in response to phosphorylation of one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102495 biolink:NamedThing GA5 3beta-hydroxylase activity Catalysis of the reaction: gibberellin A5 + O2 + 2-oxoglutarate <=> gibberellin A3 + succinate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14318 molecular_function owl:Class GO:0006316 biolink:NamedThing movement of group I intron Lateral transfer of a group I intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron; group I introns are self-splicing introns that use guanosine as a cofactor in the splicing reaction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102566 biolink:NamedThing 1-acyl dihydroxyacetone phosphate reductase activity Catalysis of the reaction: 1-oleoylglycerone 3-phosphate + NADPH + H+ = 1-oleoyl-sn-glycero-3-phosphate + NADP. tmpzr1t_l9r_go_relaxed.owl EC:1.1.1.101|MetaCyc:RXN-15046 molecular_function owl:Class GO:0047181 biolink:NamedThing tetrahydroxybenzophenone synthase activity Catalysis of the reaction: 3-hydroxybenzoyl-CoA + 3 malonyl-CoA = 3 CO2 + 2,3',4,6-tetrahydroxybenzophenone + 4 coenzyme A. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:3-hydroxybenzoyl-CoA malonyltransferase activity MetaCyc:2.3.1.151-RXN|RHEA:19305|EC:2.3.1.151 molecular_function owl:Class GO:0033837 biolink:NamedThing anthocyanin 3'-O-beta-glucosyltransferase activity Catalysis of the reaction: UDP-glucose + an anthocyanin = UDP + an anthocyanin 3'-O-beta-D-glucoside. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:anthocyanin 3'-O-beta-D-glucosyltransferase activity|UDP-glucose:anthocyanin 3'-O-glucosyltransferase activity|3'GT RHEA:35627|EC:2.4.1.238|MetaCyc:2.4.1.238-RXN molecular_function owl:Class GO:0071045 biolink:NamedThing nuclear histone mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA) within the nucleus. tmpzr1t_l9r_go_relaxed.owl krc 2009-07-30T09:52:44Z biological_process owl:Class GO:0008873 biolink:NamedThing gluconate 2-dehydrogenase activity Catalysis of the reaction: D-gluconate + NADP+ = 2-dehydro-D-gluconate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 2-keto-D-gluconate reductase activity|D-gluconate:NADP+ oxidoreductase activity|2-ketogluconate reductase activity RHEA:16653|EC:1.1.1.215|MetaCyc:1.1.1.215-RXN molecular_function owl:Class GO:0046989 biolink:NamedThing galactosyl beta-1,3 N-acetylgalactosamine beta-1,3-glucuronosyltransferase activity Catalysis of the transfer, in a beta 1,3 linkage, of D-glucuronic acid (GlcUA) from UDP-GlcUA to the disaccharide galactosyl beta-1,3 N-acetylgalactosamine, a common component of glycoproteins and glycolipids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0034821 biolink:NamedThing citronellol dehydrogenase activity Catalysis of the reaction: citronellol + NAD+ = citronellal + NADH + H+. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1155 molecular_function owl:Class GO:0018628 biolink:NamedThing terephthalate 1,2-dioxygenase activity Catalysis of the reaction: H(+) + NADH + O(2) + terephthalate = (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate + NAD(+). tmpzr1t_l9r_go_relaxed.owl 1,4-dicarboxybenzoate 1,2-dioxygenase activity|benzene-1,4-dicarboxylate,NADH:oxygen oxidoreductase (1,2-hydroxylating)|benzene-1,4-dicarboxylate 1,2-dioxygenase activity MetaCyc:1.14.12.15-RXN|UM-BBD_reactionID:r0150|KEGG_REACTION:R05148|EC:1.14.12.15|RHEA:10312 molecular_function owl:Class GO:0018407 biolink:NamedThing peptidyl-thyronine iodination to form 3',3'',5'-triiodo-L-thyronine The iodination of peptidyl-thyronine to form peptidyl-3',3'',5'-triiodo-L-thyronine (triiodothyronine). tmpzr1t_l9r_go_relaxed.owl peptidyl-thyronine iodination to form triiodothyronine RESID:AA0177 biological_process owl:Class GO:0071067 biolink:NamedThing alphav-beta3 integrin-ADAM23 complex A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM23. tmpzr1t_l9r_go_relaxed.owl ITGAV-ITGB3-ADAM23 complex mah 2009-11-03T04:04:40Z cellular_component owl:Class GO:0033941 biolink:NamedThing mannan exo-1,2-1,6-alpha-mannosidase activity Catalysis of the hydrolysis of (1->2)-alpha-D- and (1->6)-alpha-D- linkages in mannan, releasing D-mannose. tmpzr1t_l9r_go_relaxed.owl exo-1,2-1,6-alpha-mannosidase activity|1,2-1,6-alpha-D-mannan D-mannohydrolase activity MetaCyc:3.2.1.137-RXN|EC:3.2.1.137 molecular_function owl:Class GO:0005252 biolink:NamedThing open rectifier potassium channel activity Enables the transmembrane transfer of a potassium ion by an open rectifier voltage-gated channel. An open rectifier current-voltage relationship is one in which the direction of rectification depends on the external potassium ion concentration. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0036128 biolink:NamedThing CatSper complex A sperm-specific voltage-gated calcium channel that controls the intracellular calcium ion concentration and, thereby, the swimming behavior of sperm. Consists of a heteromeric tetramer surrounding a calcium ion- selective pore. May also contain additional auxiliary subunits. tmpzr1t_l9r_go_relaxed.owl CatSper channel complex|CATSPER channel bf 2012-03-02T10:26:48Z cellular_component owl:Class GO:0004533 biolink:NamedThing exoribonuclease H activity Catalysis of the exonucleolytic cleavage of RNA to 5'-phosphomonoester oligonucleotides in both 5' to 3' and 3' to 5' directions. tmpzr1t_l9r_go_relaxed.owl retroviral reverse transcriptase RNaseH EC:3.1.13.2|MetaCyc:3.1.13.2-RXN molecular_function owl:Class GO:0014871 biolink:NamedThing cross bridge formation involved in regulation of the velocity of shortening in skeletal muscle contraction The process in which actin and myosin interact, split ATP and generate force during skeletal muscle contraction. This process is one of the components of the regulation of the force of skeletal muscle contraction. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071857 biolink:NamedThing beta-endorphin receptor binding Binding to a beta-endorphin receptor. tmpzr1t_l9r_go_relaxed.owl mah 2010-09-10T03:23:01Z molecular_function owl:Class GO:1905660 biolink:NamedThing mitotic checkpoint complex assembly The aggregation, arrangement and bonding together of a set of components to form a mitotic checkpoint complex. tmpzr1t_l9r_go_relaxed.owl mitotic checkpoint complex formation|MCC assembly|MCC formation mah 2016-11-09T14:17:41Z biological_process owl:Class GO:0097138 biolink:NamedThing BAD-BCL-2 complex A heterodimeric protein complex consisting of BAD and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-02T01:37:50Z cellular_component owl:Class GO:0035447 biolink:NamedThing mycothiol synthase activity Catalysis of the reaction: 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside + acetyl-CoA = mycothiol + coenzyme A + H+. Mycothiol is also known as AcCys-GlcN-Ins and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as Cys-GlcN-Ins or desacetylmycothiol. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:Cys-GlcN-Ins acetyltransferase MetaCyc:MONOMER-9684 bf 2010-04-14T11:40:26Z molecular_function owl:Class GO:0030570 biolink:NamedThing pectate lyase activity Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. tmpzr1t_l9r_go_relaxed.owl alpha-1,4-D-endopolygalacturonic acid lyase activity|polygalacturonic acid lyase activity|pectic acid transeliminase activity|endo-alpha-1,4-polygalacturonic acid lyase activity|pectate transeliminase activity|polygalacturonate lyase activity|PGA lyase activity|endopectin methyltranseliminase activity|pectin trans-eliminase activity|polygalacturonic transeliminase activity|pectic acid lyase activity|(1->4)-alpha-D-galacturonan lyase activity|endogalacturonate transeliminase activity|pectic lyase activity|polygalacturonic acid trans-eliminase activity|PPase-N activity EC:4.2.2.2|MetaCyc:4.2.2.2-RXN molecular_function owl:Class GO:0050179 biolink:NamedThing phenylserine aldolase activity Catalysis of the reaction: L-threo-3-phenylserine = benzaldehyde + glycine. tmpzr1t_l9r_go_relaxed.owl L-threo-3-phenylserine benzaldehyde-lyase (glycine-forming)|L-threo-3-phenylserine benzaldehyde-lyase activity MetaCyc:PHENYLSERINE-ALDOLASE-RXN|EC:4.1.2.26|RHEA:21712|KEGG_REACTION:R01766 molecular_function owl:Class GO:0106084 biolink:NamedThing mitotic nuclear membrane microtubule tethering complex A protein complex capable of interacting with the spindle pole body and the nuclear envelope, in order to embed the spindle pole body in the nuclear envelope at fusion sites of the inner and outer nuclear membrane. tmpzr1t_l9r_go_relaxed.owl nuclear membrane mitotic spindle pole body tethering complex|Mps2-Bbp1-Spc29 complex https://github.com/geneontology/go-ontology/issues/14829 In S. cerevisae Mps2-Bpb1 is the membrane anchor sub complex and Spc29 is the spindle pole body linker molecule. hjd 2018-01-05T19:55:37Z cellular_component owl:Class GO:0033870 biolink:NamedThing thiol sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenylyl sulfate + a thiol = adenosine 3',5'-bisphosphate + an S-alkyl thiosulfate. tmpzr1t_l9r_go_relaxed.owl adenosine 3'-phosphate 5'-sulphatophosphate sulfotransferase activity|3'-phosphoadenylyl-sulfate:thiol S-sulfotransferase activity|PAPS sulfotransferase activity RHEA:14637|MetaCyc:THIOL-SULFOTRANSFERASE-RXN|EC:2.8.2.16 molecular_function owl:Class GO:0097099 biolink:NamedThing structural constituent of albumen The action of a molecule that contributes to the structural integrity of albumen (also called egg white). Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo. tmpzr1t_l9r_go_relaxed.owl structural constituent of egg white pr 2011-07-07T02:12:51Z molecular_function owl:Class GO:1990320 biolink:NamedThing collagen type XXI trimer A collagen homotrimer of alpha1(XXI) chains; type XXI collagen triple helices found in the extracellular matrix component of blood vessel walls and in the cytoplasm of cultured human aortic smooth muscle. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T16:40:14Z cellular_component owl:Class GO:0102338 biolink:NamedThing 3-oxo-lignoceronyl-CoA synthase activity Catalysis of the reaction: behenoyl-CoA(4-) + malonyl-CoA(5-) + H+ <=> 3-oxotetracosanoyl-CoA. + carbon dioxide + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13297|RHEA:36507 molecular_function owl:Class GO:0043781 biolink:NamedThing cobalt-factor II C20-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + cobalt-factor II = S-adenosyl-L-homocysteine + cobalt-factor III. tmpzr1t_l9r_go_relaxed.owl CbiL|cobalt-factor II C20 methyltransferase activity|cobalt-precorrin-2 C(20)-methyltransferase activity|S-adenosyl-L-methionine:cobalt-factor-II C20-methyltransferase activity EC:2.1.1.151|RHEA:17997|MetaCyc:RXN-8760 molecular_function owl:Class GO:0050565 biolink:NamedThing aerobactin synthase activity Catalysis of the reaction: 2 N(6)-acetyl-N(6)-hydroxy-L-lysine + 4 ATP + citrate + 2 H(2)O = 4 ADP + aerobactin + 8 H(+) + 4 phosphate. tmpzr1t_l9r_go_relaxed.owl citrate:N6-acetyl-N6-hydroxy-L-lysine ligase (ADP-forming)|citrate:6-N-acetyl-6-N-hydroxy-L-lysine ligase (ADP-forming) MetaCyc:6.3.2.27-RXN|RHEA:11760|KEGG_REACTION:R04357 molecular_function owl:Class GO:0102523 biolink:NamedThing 2-chloroacrylate reductase activity Catalysis of the reaction: (S)-2-chloropropanoate + NADP <=> 2-chloroacrylate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl EC:1.3.1.103|RHEA:36591|MetaCyc:RXN-14536 molecular_function owl:Class GO:0102618 biolink:NamedThing oryzalexin B synthase activity Catalysis of the reaction: oryzalexin D + NAD(P) <=> oryzalexin B + H+ + NAD(P)H. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15466 molecular_function owl:Class GO:0052901 biolink:NamedThing spermine:oxygen oxidoreductase (spermidine-forming) activity Catalysis of the reaction: H(2)O + O(2) + spermine = 3-aminopropanal + H(2)O(2) + spermidine. tmpzr1t_l9r_go_relaxed.owl N(1)-acetylpolyamine oxidase activity|polyamine oxidase activity|spermine oxidase activity|non-specific polyamine oxidase activity RHEA:25804|MetaCyc:RXN-9015|EC:1.5.3.13|MetaCyc:1.5.3.17-RXN|EC:1.5.3.16|EC:1.5.3.17|Reactome:R-HSA-141341|KEGG_REACTION:R09076 molecular_function owl:Class GO:0036343 biolink:NamedThing psychomotor behavior The specific behavior of an organism that combines cognitive functions and physical movement. For example, driving a car, throwing a ball, or playing a musical instrument. tmpzr1t_l9r_go_relaxed.owl bf 2012-09-11T14:32:06Z biological_process owl:Class GO:0034909 biolink:NamedThing 6-hydroxypseudooxynicotine dehydrogenase activity Catalysis of the reaction: 6-hydroxypseudooxynicotine + H2O + OH- = 6-hydroxy-3-succinoylpyridine + 4 H+ + 4 e- + methylamine. tmpzr1t_l9r_go_relaxed.owl RHEA:34223|EC:1.5.99.14|UM-BBD_reactionID:r1441 molecular_function owl:Class GO:0047362 biolink:NamedThing thiosulfate-dithiol sulfurtransferase activity Catalysis of the reaction: dithioerythritol + thiosulfate = hydrogen sulfide + dithioerythritol disulfide + sulfite. tmpzr1t_l9r_go_relaxed.owl thiosulphate-dithiol sulphurtransferase activity|thiosulfate:dithioerythritol sulfurtransferase activity|TSR|thiosulfate reductase activity RHEA:15121|EC:2.8.1.5|MetaCyc:2.8.1.5-RXN molecular_function owl:Class GO:0035629 biolink:NamedThing N-terminal protein amino acid N-linked glycosylation Addition of a carbohydrate or carbohydrate derivative unit via a nitrogen (N) atom of the N-terminal amino acid of a protein. tmpzr1t_l9r_go_relaxed.owl Note that the only known alpha amino glycosylation is on an asparagine; see UniProtKB:P58522. However, this feature is not differentiated from normal N-glycosylation of asparagine. bf 2010-12-17T10:45:48Z biological_process owl:Class GO:0097601 biolink:NamedThing retina blood vessel maintenance A retina homeostatic process preventing the degeneration of a retina blood vessel. tmpzr1t_l9r_go_relaxed.owl maintenance of retina blood vessel|maintenance of choriocapillaris|maintenance of retinal blood vessel pr 2014-05-11T18:42:24Z biological_process owl:Class GO:0150059 biolink:NamedThing amylin receptor 1 signaling pathway A series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 1 (AMY1), a G protein-coupled receptor complex, on the surface of the target cell. Other ligands that have been shown to initiate the AMY1 signaling pathway include the calcitonin related peptide (CGRP) and adrenomedullin (AM/ADM). tmpzr1t_l9r_go_relaxed.owl AMY1 signaling pathway bc 2018-06-21T10:58:02Z biological_process owl:Class GO:0036467 biolink:NamedThing 5-hydroxy-L-tryptophan decarboxylase activity Catalysis of the reaction: 5-hydroxy-L-tryptophan + H+ = CO2 + serotonin. tmpzr1t_l9r_go_relaxed.owl 5-hydroxytryptophan decarboxylase activity RHEA:18533 bf 2014-07-21T09:22:24Z molecular_function owl:Class GO:0034863 biolink:NamedThing 2,4,4-trimethyl-1-pentanol dehydrogenase activity Catalysis of the reaction: 2,4,4-trimethyl-1-pentanol = 2,4,4-trimethylpentanal + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1270 molecular_function owl:Class GO:0045519 biolink:NamedThing interleukin-23 receptor binding Binding to an interleukin-23 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-23 receptor ligand|IL-23 molecular_function owl:Class GO:0102504 biolink:NamedThing luteolinidin 5-O-glucosyltransferase activity Catalysis of the reaction: luteolinidin + UDP-alpha-D-glucose <=> luteolinidin 5-O-glucoside + UDP + 2 H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14424 molecular_function owl:Class GO:0021810 biolink:NamedThing neurotransmitter signaling initiating cell movement, involved in cerebral cortex radial glia guided migration Signaling by neurotransmitters and their receptors that results in the initiation of movement of cells as a component of the process of glial-mediated radial migration. tmpzr1t_l9r_go_relaxed.owl neurotransmitter signalling initiating cell movement, involved in cerebral cortex glial-mediated radial migration biological_process owl:Class GO:0097417 biolink:NamedThing nematosome Cytoplasmic, ball-like inclusion resembling a nucleolus and consisting of a convoluted network of electron-opaque strands embedded in a less dense matrix. It measures approximately 0.9 microns and lacks a limiting membrane. Its strands (diameter = 400-600 A) appear to be made of an entanglement of tightly packed filaments and particles approximately 25-50 A thick. Cytochemical studies suggest the presence of nonhistone proteins and some RNA. Usually only one such structure is present in a cell, and it appears to occur in most ganglion cells. Although they can be seen anywhere in the cell body, nematosomes are typically located in the perinuclear cytoplasm, where they are often associated with smooth-surfaced and coated vesicles. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao138430598 pr 2012-11-06T16:47:56Z cellular_component owl:Class GO:0070332 biolink:NamedThing CD20-Lck-Lyn-Fyn complex A protein complex that contains the cell-surface protein CD20 and the Src family tyrosine kinases Lck, Lyn and Fyn. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0047073 biolink:NamedThing 2,4'-dihydroxyacetophenone dioxygenase activity Catalysis of the reaction: 2,4'-dihydroxyacetophenone + O(2) = 4-hydroxybenzoate + formate + 2 H(+). tmpzr1t_l9r_go_relaxed.owl (4-hydroxybenzoyl)methanol oxygenase activity|2,4'-dihydroxyacetophenone oxidoreductase (C-C-bond-cleaving) UM-BBD_reactionID:r1410|MetaCyc:1.13.11.41-RXN|KEGG_REACTION:R01305|EC:1.13.11.41|RHEA:24416 molecular_function owl:Class GO:0000171 biolink:NamedThing ribonuclease MRP activity Catalysis of the site-specific cleavage of RNA by a catalytic RNA-mediated mechanism; substrates include the A3 site in the ITS1 of pre-rRNA. tmpzr1t_l9r_go_relaxed.owl RNase MRP https://github.com/geneontology/go-ontology/issues/22261 Wikipedia:RNase_MRP molecular_function owl:Class GO:0050821 biolink:NamedThing protein stabilization Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation. tmpzr1t_l9r_go_relaxed.owl protein sequestering|positive regulation of protein stability|protein stabilisation|protein stabilization activity|lysosomal protein stabilization biological_process owl:Class GO:0016611 biolink:NamedThing iron-iron nitrogenase complex An enzyme complex containing an iron-iron cluster found in species such as the photosynthetic bacterium Rhodobacter capsulatus. It is composed of two main subunits, dinitrogenase and nitrogenase reductase. Dinitrogenase, the iron-iron containing subunit, has an alpha1-beta2 or alpha2-beta2 structure, and the nitrogenase reductase subunit is a homodimer. Functions in the catalysis of the formation of oxidized ferredoxin and ammonia from reduced ferredoxin and nitrogen. tmpzr1t_l9r_go_relaxed.owl Note that it is not established whether the nitrogenase exists in vivo in a specific particle or whether the nitrogenase proteins are bound nonspecifically to the membranes of some cells. cellular_component owl:Class GO:0099073 biolink:NamedThing mitochondrion-derived vesicle A vesicle derived via budding from a mitochondrion. These vesicles often contain inner membrane and, much more rarely, cristae. tmpzr1t_l9r_go_relaxed.owl MDV cellular_component owl:Class GO:0070045 biolink:NamedThing synaptobrevin 2-SNAP-25-syntaxin-2 complex A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 2 (or orthologs thereof). tmpzr1t_l9r_go_relaxed.owl Stx2-Snap25-Vamp2 complex|SNARE complex (Stx2, Snap25, Vamp2) cellular_component owl:Class GO:0047275 biolink:NamedThing glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity Catalysis of the reaction: N-acetyl-D-glucosaminyl-(1,3)-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = D-galactosyl-N-acetyl-D-glucosaminyl-(1,3)-D-galactosyl-(1,4)-D-glucosylceramide + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-galactose:N-acetyl-D-glucosaminyl-1,3-D-galactosyl-1,4-D-glucosylceramide beta-D-galactosyltransferase activity|paragloboside synthase activity|uridine diphosphogalactose-acetyl-glucosaminylgalactosylglucosylceramide galactosyltransferase activity|GalT-4|UDPgalactose:N-acetyl-D-glucosaminyl-1,3-D-galactosyl-1,4-D-glucosylceramide beta-D-galactosyltransferase activity MetaCyc:2.4.1.86-RXN|EC:2.4.1.86|RHEA:16045 molecular_function owl:Class GO:0047586 biolink:NamedThing 5'-acylphosphoadenosine hydrolase activity Catalysis of the reaction: 5'-acylphosphoadenosine + H2O = AMP + a carboxylate. tmpzr1t_l9r_go_relaxed.owl 5'-acylphosphoadenosine acylhydrolase activity|5-phosphoadenosine hydrolase activity EC:3.6.1.20|RHEA:16837|MetaCyc:5-ACYLPHOSPHOADENOSINE-HYDROLASE-RXN molecular_function owl:Class GO:0072274 biolink:NamedThing metanephric glomerular basement membrane development The process whose specific outcome is the progression of the metanephric glomerular basement membrane over time, from its formation to the mature structure. The metanephric glomerular basement membrane is the basal laminal portion of the metanephric glomerulus which performs the actual filtration. tmpzr1t_l9r_go_relaxed.owl mah 2010-04-01T02:43:51Z biological_process owl:Class GO:0102234 biolink:NamedThing but-1-en-3-one reductase activity Catalysis of the reaction: buten-2-one + NADPH + H+ <=> butan-2-one + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12293 molecular_function owl:Class GO:0043919 biolink:NamedThing agmatine aminopropyltransferase activity Catalysis of the reaction: agmatine + S-adenosylmethioninamine = N1-aminopropylagmatine + 5'-methylthioadenosine. tmpzr1t_l9r_go_relaxed.owl agmatine aminopropyl transferase activity EC:2.5.1.104 molecular_function owl:Class GO:0018656 biolink:NamedThing phenanthrene 3,4-monooxygenase activity Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-3,4-oxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0508 molecular_function owl:Class GO:0102195 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--D-lysine ligase activity Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + D-lysinium(1+) + ATP <=> UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-D-lysine + ADP + hydrogenphosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-12042|RHEA:25273|EC:6.3.2.37 molecular_function owl:Class GO:0010158 biolink:NamedThing abaxial cell fate specification The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061770 biolink:NamedThing translation elongation factor binding Binding to a translation elongation factor, any polypeptide factor involved in the peptide elongation in ribosome-mediated translation. tmpzr1t_l9r_go_relaxed.owl dph 2016-07-09T09:31:11Z molecular_function owl:Class GO:0043274 biolink:NamedThing phospholipase binding Binding to a phospholipase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0140080 biolink:NamedThing class III/IV DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the cleavage of an AP site 3' and 5' of the baseless site, generating a 3'-phosphate and a 5'-OH. tmpzr1t_l9r_go_relaxed.owl endonuclease IV|endonuclease III https://github.com/geneontology/go-ontology/issues/22262 Wikipedia:AP_endonuclease Note that this term is does not have parentage in the 'nuclease activity' branch of the ontology because both GO and the Enzyme Commission define nuclease activity as a type of hydrolysis. Class II AP endonuclease is a nuclease, but not Class I, III and IV. pg 2017-07-24T11:48:18Z molecular_function owl:Class GO:0018400 biolink:NamedThing peptidyl-proline hydroxylation to 3-hydroxy-L-proline The modification of peptidyl-proline to form 3-hydroxy-L-proline; catalyzed by procollagen-proline 3-dioxygenase. tmpzr1t_l9r_go_relaxed.owl RESID:AA0029 See also the molecular function term 'procollagen-proline 3-dioxygenase activity ; GO:0019797'. biological_process owl:Class GO:0046593 biolink:NamedThing mandelonitrile lyase activity Catalysis of the reaction: mandelonitrile = cyanide + benzaldehyde. tmpzr1t_l9r_go_relaxed.owl mandelonitrile benzaldehyde-lyase (cyanide-forming)|hydroxynitrile lyase activity|D-alpha-hydroxynitrile lyase activity|(R)-oxynitrilase activity|mandelonitrile benzaldehyde-lyase activity|D-oxynitrilase activity RHEA:18313|EC:4.1.2.10|MetaCyc:MANDELONITRILE-LYASE-RXN molecular_function owl:Class GO:0097548 biolink:NamedThing seed abscission The controlled shedding of a seed. tmpzr1t_l9r_go_relaxed.owl pr 2014-01-22T07:57:41Z biological_process owl:Class GO:0071360 biolink:NamedThing cellular response to exogenous dsRNA Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to viral dsRNA|cellular response to exogenous double-stranded RNA mah 2009-12-11T03:02:00Z biological_process owl:Class GO:0097181 biolink:NamedThing protein C inhibitor-coagulation factor V complex A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor V (F5); formation of the complex inhibits the serine protease activity of coagulation factor V. tmpzr1t_l9r_go_relaxed.owl PCI-coagulation factor V complex|SERPINA5-coagulation factor V complex|plasma serine protease inhibitor-coagulation factor V complex|serpin A5-coagulation factor V complex|protein C inhibitor-F5 complex pr 2011-10-16T08:57:03Z cellular_component owl:Class GO:0097344 biolink:NamedThing Rix1 complex A protein complex that comprises Rix1p, Ipi1p and Ipi3p, and is required for processing of ITS2 sequences from 35S pre-rRNA. The Rix1 complex has been identified in budding yeast and fission yeast, and members of this complex are conserved in higher eukaryotes. tmpzr1t_l9r_go_relaxed.owl IPI complex pr 2012-06-18T01:38:49Z cellular_component owl:Class GO:0097112 biolink:NamedThing gamma-aminobutyric acid receptor clustering The receptor clustering process in which gamma-aminobutyric acid (GABA) receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl GABA receptor clustering pr 2011-07-31T05:21:08Z biological_process owl:Class GO:0047644 biolink:NamedThing alizarin 2-beta-glucosyltransferase activity Catalysis of the reaction: alizarin + UDP-D-glucose = 1-hydroxy-2-(beta-D-glucosyloxy)-9,10-anthraquinone + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl alizarin 2-b-glucosyltransferase activity|UDPglucose:1,2-dihydroxy-9,10-anthraquinone 2-O-beta-D-glucosyl-transferase activity|UDP-glucose:1,2-dihydroxy-9,10-anthraquinone 2-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-alizarin glucosyltransferase activity EC:2.4.1.103|RHEA:20677|MetaCyc:ALIZARIN-2-BETA-GLUCOSYLTRANSFERASE-RXN|KEGG_REACTION:R03573 molecular_function owl:Class GO:0010196 biolink:NamedThing nonphotochemical quenching The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0008790 biolink:NamedThing arabinose isomerase activity Catalysis of the reaction: D-arabinose = D-ribulose. tmpzr1t_l9r_go_relaxed.owl D-arabinose(L-fucose) isomerase activity|D-arabinose isomerase activity|D-arabinose aldose-ketose-isomerase activity|D-arabinose ketol-isomerase activity EC:5.3.1.3|RHEA:13849|MetaCyc:DARABISOM-RXN molecular_function owl:Class GO:0047019 biolink:NamedThing indole-3-acetaldehyde reductase (NADPH) activity Catalysis of the reaction: indole-3-ethanol + NADP(+) = (indol-3-yl)acetaldehyde + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (indol-3-yl)ethanol:NADP+ oxidoreductase activity|indoleacetaldehyde (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|indole-3-ethanol:NADP+ oxidoreductase activity KEGG_REACTION:R02680|EC:1.1.1.191|MetaCyc:1.1.1.191-RXN|RHEA:17037 molecular_function owl:Class GO:0071189 biolink:NamedThing protocadherin-alpha-v7-protocadherin-gamma-a3 complex A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Pcdha7-Pcdhga3 complex mah 2009-11-23T04:24:28Z cellular_component owl:Class GO:0050299 biolink:NamedThing streptomycin 3''-kinase activity Catalysis of the reaction: ATP + streptomycin = ADP + 2 H(+) + streptomycin 3''-phosphate. tmpzr1t_l9r_go_relaxed.owl ATP:streptomycin 3''-phosphotransferase activity|streptomycin 3''-kinase (phosphorylating)|streptomycin 3''-phosphotransferase activity KEGG_REACTION:R02227|MetaCyc:STREPTOMYCIN-3-KINASE-RXN|RHEA:18377|EC:2.7.1.87 molecular_function owl:Class GO:0072449 biolink:NamedThing response to G1 cell size control checkpoint signaling A process that occurs in response to signals generated as a result of mitotic cell cycle G1/S transition size control checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl response to signal involved in mitotic cell cycle G1/S transition size control checkpoint|mitotic cell cycle G1/S transition size control checkpoint effector process mah 2010-12-09T10:56:39Z biological_process owl:Class GO:0060772 biolink:NamedThing leaf phyllotactic patterning The radial pattern formation process that results in the formation of leaf primordia around the center of a shoot apical meristem. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T06:27:15Z biological_process owl:Class GO:0071127 biolink:NamedThing alpha9-beta1 integrin-osteopontin complex A protein complex that consists of an alpha9-beta1 integrin complex bound to osteopontin. tmpzr1t_l9r_go_relaxed.owl ITGA9-ITGB1-SPP1 complex mah 2009-11-13T02:24:09Z cellular_component owl:Class GO:0106332 biolink:NamedThing ds/ssDNA junction-specific dsDNA endonuclease activity Catalysis of the endonucleolytic cleavage of double-stranded DNA near a double-strand/single-strand DNA junction. tmpzr1t_l9r_go_relaxed.owl hjd 2020-10-08T18:09:57Z molecular_function owl:Class GO:0018399 biolink:NamedThing peptidyl-phenylalanine bromination to L-4'-bromophenylalanine The bromination of peptidyl-phenylalanine to form L-4'-bromophenylalanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0176 biological_process owl:Class GO:0044654 biolink:NamedThing starch alpha-glucosidase activity Catalysis of the reaction: starch + H2O = alpha-D-glucose. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.- jl 2012-07-23T02:08:10Z molecular_function owl:Class GO:0031854 biolink:NamedThing orexigenic neuropeptide QRFP receptor binding Binding to an orexigenic neuropeptide QRFP receptor. tmpzr1t_l9r_go_relaxed.owl orexigenic neuropeptide QRFP receptor ligand molecular_function owl:Class GO:0021741 biolink:NamedThing spinal trigeminal nucleus development The process whose specific outcome is the progression of the spinal trigeminal nucleus over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102114 biolink:NamedThing caprate dehydroxylase activity Catalysis of the reaction: decanoate + NADPH + O2 + H+ <=> 10-hydroxycaprate + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11325 molecular_function owl:Class GO:0080102 biolink:NamedThing 3-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 3-methylthiopropyl-glucosinolate = 3-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2221 dhl 2009-04-23T04:26:41Z molecular_function owl:Class GO:0050012 biolink:NamedThing juglone 3-hydroxylase activity Catalysis of the reaction: 2 juglone + O2 = 2 3,5-dihydroxy-1,4-naphthoquinone + 2 H+. tmpzr1t_l9r_go_relaxed.owl juglone hydroxylase activity|naphthoquinone hydroxylase activity|juglone 3-monooxygenase activity|5-hydroxy-1,4-naphthoquinone,hydrogen-donor:oxygen oxidoreductase (3-hydroxylating) https://github.com/geneontology/go-ontology/issues/21412 RHEA:18745|EC:1.17.3.4|MetaCyc:JUGLONE-3-MONOOXYGENASE-RXN|KEGG_REACTION:R04327 Formerly EC:1.14.99.27. molecular_function owl:Class GO:0044680 biolink:NamedThing methylthiol:coenzyme M methyltransferase complex A protein complex of two polypeptides which catalyzes the transfer of methyl group from methylthiol to coenzyme M during methanogenesis. tmpzr1t_l9r_go_relaxed.owl methylthiol:coenzyme M methyl transferase complex|methylthiol coenzyme M methyl transferase complex|methylthiol:CoM methyltransferase complex jl 2012-08-09T11:08:22Z cellular_component owl:Class GO:0018805 biolink:NamedThing benzylsuccinate synthase activity Catalysis of the reaction: fumarate + toluene = 2-benzylsuccinate. tmpzr1t_l9r_go_relaxed.owl benzylsuccinate fumarate-lyase activity|benzylsuccinate fumarate-lyase (toluene-forming) RHEA:10416|MetaCyc:RXN-863|UM-BBD_enzymeID:e0259|EC:4.1.99.11|KEGG_REACTION:R05598 molecular_function owl:Class GO:0047637 biolink:NamedThing alanylphosphatidylglycerol synthase activity Catalysis of the reaction: L-alanyl-tRNA + phosphatidylglycerol = tRNA + 3-O-L-alanyl-1-O-phosphatidylglycerol. tmpzr1t_l9r_go_relaxed.owl O-alanylphosphatidylglycerol synthase activity|alanyl phosphatidylglycerol synthetase activity|L-alanyl-tRNA:phosphatidylglycerol alanyltransferase activity RHEA:20489|EC:2.3.2.11|MetaCyc:ALANYLPHOSPHATIDYLGLYCEROL-SYNTHASE-RXN molecular_function owl:Class GO:0010098 biolink:NamedThing suspensor development The process whose specific outcome is the progression of the suspensor over time, from its formation to the mature structure. The suspensor is the extension at the base of the embryo that anchors the embryo in the embryo sac and pushes it into the endosperm. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0030792 biolink:NamedThing methylarsonite methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + methylarsonite = S-adenosyl-L-homocysteine + dimethylarsinate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2.1.1.138-RXN|EC:2.1.1.- Note that EC:2.1.1.138 was deleted from EC as the reaction is performed by arsenite methyltransferase (EC:2.1.1.137). molecular_function owl:Class GO:0090550 biolink:NamedThing response to molybdenum starvation Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of molybdenum. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-22T13:57:16Z biological_process owl:Class GO:0102413 biolink:NamedThing 6-O-methyl-deacetylisoipecoside beta-glucosidase activity Catalysis of the reaction: 6-O-methyl-N-deacetylisoipecoside + H2O <=> 6-O-methyl-N-deacetylisoipecoside aglycon + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13791 molecular_function owl:Class GO:0018645 biolink:NamedThing alkene monooxygenase activity Catalysis of the reaction: propene + NADH + H+ + O2 = 1,2-epoxypropane + NAD+ + H2O. tmpzr1t_l9r_go_relaxed.owl alkene,NADH:oxygen oxidoreductase activity|alkene epoxygenase activity MetaCyc:1.14.13.69-RXN|UM-BBD_enzymeID:e0039|RHEA:11792|EC:1.14.13.69 molecular_function owl:Class GO:0036237 biolink:NamedThing acyl-glucuronidase activity Catalysis of the reaction: an acyl-glucuronoside + H2O = an alcohol + D-glucuronate. tmpzr1t_l9r_go_relaxed.owl acyl-glucuronide deglucuronidation activity bf 2012-05-18T04:32:25Z molecular_function owl:Class GO:0019598 biolink:NamedThing (R)-mandelate catabolic process to catechol The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including catechol. tmpzr1t_l9r_go_relaxed.owl (R)-mandelate degradation to catechol|(R)-mandelate breakdown to catechol biological_process owl:Class GO:0097169 biolink:NamedThing AIM2 inflammasome complex An inflammasome complex that consists of AIM2, ASC, and caspase-1. AIM2 is a member of the HN-200 protein family that appears to be the sensor of cytosolic double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl pr 2011-10-03T07:36:21Z cellular_component owl:Class GO:0004309 biolink:NamedThing exopolyphosphatase activity Catalysis of the reaction: polyphosphate(n) + H2O = polyphosphate(n-1) + phosphate. tmpzr1t_l9r_go_relaxed.owl acid phosphoanhydride phosphohydrolase activity|Gra-Pase activity|polyphosphate phosphohydrolase activity|exopolypase activity|metaphosphatase activity RHEA:21528|EC:3.6.1.11|MetaCyc:EXOPOLYPHOSPHATASE-RXN molecular_function owl:Class GO:0102465 biolink:NamedThing zeaxanthin 2,2'-beta-hydroxylase activity Catalysis of the reaction: zeaxanthin + 2 NADH + 2 H+ + 2 O2 <=> nostoxanthin + 2 NAD + 2 H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14018 molecular_function owl:Class GO:0033845 biolink:NamedThing hydroxymethylfurfural reductase (NADPH) activity Catalysis of the reaction: 5-hydroxymethylfurfural + NADPH + H+ = 2,5-bis-hydroxymethylfuran + NADP+. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018527 biolink:NamedThing cyclohexylamine oxidase activity Catalysis of the reaction: cyclohexylamine + O2 + H2O = cyclohexanone + NH3 + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl cyclohexylamine:oxygen oxidoreductase (deaminating) UM-BBD_reactionID:r0754|RHEA:18433|EC:1.4.3.12|MetaCyc:CYCLOHEXYLAMINE-OXIDASE-RXN molecular_function owl:Class GO:1990082 biolink:NamedThing DnaA-L2 complex A protein complex that inhibits unwinding of DNA at the origin of replication and assembly of the pre-primosome. In E. coli, this complex is composed of DnaA and of the ribosomal protein L2. tmpzr1t_l9r_go_relaxed.owl bhm 2013-04-30T11:46:41Z cellular_component owl:Class GO:0050644 biolink:NamedThing cis-p-coumarate glucosyltransferase activity Catalysis of the reaction: cis-4-coumarate + UDP-D-glucose = 4'-O-beta-D-glucosyl-cis-4-coumarate + H(+) + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-glucose:cis-p-coumarate beta-D-glucosyltransferase activity RHEA:13129|EC:2.4.1.209|KEGG_REACTION:R05324|MetaCyc:2.4.1.209-RXN molecular_function owl:Class GO:0097080 biolink:NamedThing plasma membrane selenite transport The directed movement of inorganic selenite (HSeO3-1 at physiological pH) across a plasma membrane. tmpzr1t_l9r_go_relaxed.owl plasma membrane hydrogenselenite transport pr 2011-06-17T10:03:55Z biological_process owl:Class GO:0036247 biolink:NamedThing phytochelatin 3 import into vacuole The directed movement of phytochelatin 3 (PC3) into the vacuole. Phytochelatin 3 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=3, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond. tmpzr1t_l9r_go_relaxed.owl PC3 import into vacuole bf 2012-05-31T11:11:03Z biological_process owl:Class GO:0052785 biolink:NamedThing cellulose catabolism by endo-processive cellulases The breakdown into simpler components of cellulose. Catabolism is initiated by endohydrolytic attacks on the cellulose chain, and the resulting pieces are further degraded by cellulase enzymes to produce smaller and smaller fragments. tmpzr1t_l9r_go_relaxed.owl endo-processive cellulase activity ai 2011-10-04T09:31:16Z biological_process owl:Class GO:0009600 biolink:NamedThing detection of nematode The series of events in which a stimulus from a nematode is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of nematode biological_process owl:Class GO:0103025 biolink:NamedThing alpha-amylase activity (releasing maltohexaose) Catalysis of the reaction: n H2O + a 1,4-alpha-D-glucan = alpha-maltohexaose + a 1,4-alpha-D-glucan. tmpzr1t_l9r_go_relaxed.owl EC:3.2.1.1|MetaCyc:RXN0-5181 molecular_function owl:Class GO:0042202 biolink:NamedThing N-cyclopropylmelamine catabolic process The chemical reactions and pathways resulting in the breakdown of N-cyclopropylmelamine, a triazine compound commonly used as an insecticide. tmpzr1t_l9r_go_relaxed.owl N-cyclopropylmelamine breakdown|cyromazine catabolic process|N-cyclopropylmelamine degradation|N-cyclopropylmelamine catabolism|cyromazine catabolism UM-BBD_pathwayID:cpm biological_process owl:Class GO:0050143 biolink:NamedThing nocardicin-A epimerase activity Catalysis of the reaction: isonocardicin A = nocardicin A. tmpzr1t_l9r_go_relaxed.owl isonocardicin A epimerase activity EC:5.1.1.14|RHEA:22792|MetaCyc:NOCARDICIN-A-EPIMERASE-RXN|KEGG_REACTION:R03073 molecular_function owl:Class GO:1904157 biolink:NamedThing DN4 thymocyte differentiation The process in which a relatively unspecialized cell acquires the specialized features of a DN4 thymocyte. A DN4 thymocyte is a CD4-,CD8- thymocyte that is also CD44-,CD25-. tmpzr1t_l9r_go_relaxed.owl dph 2015-04-15T12:53:07Z biological_process owl:Class GO:0070038 biolink:NamedThing rRNA (pseudouridine-N3-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004333 biolink:NamedThing fumarate hydratase activity Catalysis of the reaction: (S)-malate = fumarate + H(2)O. tmpzr1t_l9r_go_relaxed.owl (S)-malate hydro-lyase (fumarate-forming)|L-malate hydro-lyase activity|fumarase activity|(S)-malate hydro-lyase activity MetaCyc:FUMHYDR-RXN|EC:4.2.1.2|KEGG_REACTION:R01082|RHEA:12460|Reactome:R-HSA-451033|Reactome:R-HSA-70982 molecular_function owl:Class GO:0046564 biolink:NamedThing oxalate decarboxylase activity Catalysis of the reaction: H(+) + oxalate = CO(2) + formate. tmpzr1t_l9r_go_relaxed.owl oxalate carboxy-lyase activity|oxalate carboxy-lyase (formate-forming) MetaCyc:OXALATE-DECARBOXYLASE-RXN|KEGG_REACTION:R00522|RHEA:16509|EC:4.1.1.2 molecular_function owl:Class GO:0046353 biolink:NamedThing aminoglycoside 3-N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring. tmpzr1t_l9r_go_relaxed.owl gentamicin-(3)-N-acetyltransferase activity|gentamycin acetyltransferase I|gentamycin 3'-N-acetyltransferase activity|3'-aminoglycoside acetyltransferase activity|gentamicin acetyltransferase I activity|gentamicin 3'-N-acetyltransferase activity|acetyl-CoA:gentamicin-C N3'-acetyltransferase activity|acetyl-CoA:2-deoxystreptamine-antibiotic N3'-acetyltransferase activity|3-N-aminoglycoside acetyltransferase activity|aminoglycoside acetyltransferase AAC(3)-I activity|aminoglycoside acetyltransferase AAC(3)-1 MetaCyc:GENTAMICIN-3-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.81|MetaCyc:AMINOGLYCOSIDE-N3-ACETYLTRANSFERASE-RXN|EC:2.3.1.60 GO:0016991 molecular_function owl:Class GO:0043726 biolink:NamedThing 5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity Catalysis of the reaction: 5-amino-6-(5-phosphoribitylamino)-2,4(1H,3H)-pyrimidinedione + H2O = 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione + orthophosphate. tmpzr1t_l9r_go_relaxed.owl pyrimidine phosphatase activity RHEA:25197|MetaCyc:RIBOPHOSPHAT-RXN GO:0019173 molecular_function owl:Class GO:0010151 biolink:NamedThing chloroplast elongation Expansion of the chloroplast that usually precedes division. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0045352 biolink:NamedThing interleukin-1 type I receptor antagonist activity Blocks the binding of interleukin-1 to interleukin-1 type I receptors. tmpzr1t_l9r_go_relaxed.owl IL-1ra type I molecular_function owl:Class GO:0102464 biolink:NamedThing zeaxanthin 2-beta-hydroxylase activity Catalysis of the reaction: zeaxanthin + O2 + NADH + H+ <=> caloxanthin + H2O + NAD. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14016 molecular_function owl:Class GO:0050561 biolink:NamedThing glutamate-tRNA(Gln) ligase activity Catalysis of the reaction: tRNA(Glx) + L-glutamate + ATP = glutamyl-tRNA(Glx) + diphosphate + AMP. tmpzr1t_l9r_go_relaxed.owl nondiscriminating glutamyl-tRNA synthetase activity|glutamate-tRNAGln ligase activity|L-glutamate:tRNAGlx ligase (AMP-forming) EC:6.1.1.24|RHEA:18397|MetaCyc:6.1.1.24-RXN molecular_function owl:Class GO:0030165 biolink:NamedThing PDZ domain binding Binding to a PDZ domain of a protein, a domain found in diverse signaling proteins. tmpzr1t_l9r_go_relaxed.owl GLGF-domain binding|DHR-domain binding molecular_function owl:Class GO:0003935 biolink:NamedThing GTP cyclohydrolase II activity Catalysis of the reaction: GTP + 3 H(2)O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + diphosphate + formate + 3 H(+). tmpzr1t_l9r_go_relaxed.owl GTP-8-formylhydrolase activity|guanosine triphosphate cyclohydrolase II|GTP 7,8-8,9-dihydrolase (diphosphate-forming) RHEA:23704|MetaCyc:GTP-CYCLOHYDRO-II-RXN|EC:3.5.4.25|KEGG_REACTION:R00425 molecular_function owl:Class GO:0033514 biolink:NamedThing L-lysine catabolic process to acetyl-CoA via L-pipecolate The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate L-pipecolate. tmpzr1t_l9r_go_relaxed.owl L-lysine degradation to acetyl-CoA via L-pipecolate|L-lysine breakdown to acetyl-CoA via L-pipecolate MetaCyc:PWY-5283 biological_process owl:Class GO:0047197 biolink:NamedThing triglyceride-sterol O-acyltransferase activity Catalysis of the reaction: a 3-beta-hydroxysterol + triacylglycerol = a 3-beta-hydroxysterol ester + 1,2-diacylglycerol. tmpzr1t_l9r_go_relaxed.owl triacylglycerol:sterol acyltransferase activity|triacylglycerol-sterol O-acyltransferase activity|triacylglycerol:3beta-hydroxysterol O-acyltransferase activity EC:2.3.1.77|MetaCyc:2.3.1.77-RXN|RHEA:16897 molecular_function owl:Class GO:0099076 biolink:NamedThing mitochondrion to peroxisome transport Transport from the mitochondrion to the peroxisome, mediated by mitochondrion-derived vesicles. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061420 biolink:NamedThing regulation of transcription from RNA polymerase II promoter in response to biotin starvation Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of biotin. tmpzr1t_l9r_go_relaxed.owl dph 2012-01-25T09:55:39Z biological_process owl:Class GO:0043849 biolink:NamedThing Ras palmitoyltransferase activity Catalysis of the reaction: palmitoyl-CoA + protein-cysteine = S-palmitoyl protein + CoA, specific for Ras proteins. tmpzr1t_l9r_go_relaxed.owl Ras protein acyltransferase activity|DHHC cysteine-rich domain-containing protein ERF2|palmitoyltransferase ERF2|ERF2 molecular_function owl:Class GO:0047405 biolink:NamedThing pyrimidine-5'-nucleotide nucleosidase activity Catalysis of the reaction: H2O + a pyrimidine 5'-nucleotide = ribose-5-phosphate + a pyrimidine. tmpzr1t_l9r_go_relaxed.owl pyrimidine-5'-nucleotide phosphoribo(deoxyribo)hydrolase activity|pyrimidine nucleotide N-ribosidase activity|Pyr5N activity RHEA:13425|MetaCyc:3.2.2.10-RXN|EC:3.2.2.10 molecular_function owl:Class GO:0047483 biolink:NamedThing imidazoleacetate-phosphoribosyldiphosphate ligase activity Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + ATP + H(2)O + imidazol-4-ylacetate = 1-(5-phosphoribosyl)imidazol-4-ylacetate + ADP + diphosphate + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl imidazoleacetate:5-phosphoribosyl-diphosphate ligase (ADP- and diphosphate-forming)|5-phosphoribosylimidazoleacetate synthetase activity EC:6.3.4.8|RHEA:16485|MetaCyc:6.3.4.8-RXN|KEGG_REACTION:R04068 molecular_function owl:Class GO:0033442 biolink:NamedThing AAC codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AAC codon. tmpzr1t_l9r_go_relaxed.owl asparagine tRNA Note that in the standard genetic code, AAC codes for asparagine. molecular_function owl:Class GO:0008797 biolink:NamedThing aspartate ammonia-lyase activity Catalysis of the reaction: L-aspartate = fumarate + NH3. tmpzr1t_l9r_go_relaxed.owl L-aspartate ammonia-lyase activity|L-aspartase activity|fumaric aminase activity|aspartase activity|L-aspartate ammonia-lyase (fumarate-forming) EC:4.3.1.1|MetaCyc:ASPARTASE-RXN|RHEA:16601 molecular_function owl:Class GO:0034738 biolink:NamedThing lanosterol O-acyltransferase activity Catalysis of the reaction: acyl-CoA + lanosterol = CoA + lanosterol ester. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047535 biolink:NamedThing 2-alkyn-1-ol dehydrogenase activity Catalysis of the reaction: 2-butyne-1,4-diol + NAD(+) = 4-hydroxy-2-butynal + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl 2-butyne-1,4-diol:NAD+ 1-oxidoreductase activity EC:1.1.1.165|MetaCyc:2-ALKYN-1-OL-DEHYDROGENASE-RXN|RHEA:19101|KEGG_REACTION:R03963 molecular_function owl:Class GO:0019246 biolink:NamedThing L(+)-lactate biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of L(+)-lactate from other compounds, including pyruvate. tmpzr1t_l9r_go_relaxed.owl L(+)-lactate synthesis from pyruvate|L(+)-lactate formation from pyruvate|S-lactate biosynthetic process from pyruvate|L(+)-lactate anabolism from pyruvate MetaCyc:PWY-5481 biological_process owl:Class GO:1990911 biolink:NamedThing response to psychosocial stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of exposure to aversive or demanding psychological and social conditions that tax or exceed the behavioral resources of the organism. tmpzr1t_l9r_go_relaxed.owl sl 2015-12-07T20:38:35Z biological_process owl:Class GO:0061867 biolink:NamedThing establishment of mitotic spindle asymmetry The mitotic spindle organization process by which a mitotic spindle becomes asymmetric either in position or structure. tmpzr1t_l9r_go_relaxed.owl dph 2017-04-28T12:39:13Z biological_process owl:Class GO:0035202 biolink:NamedThing tracheal pit formation in open tracheal system Formation of the tracheal pits, the first tube-like structures to form in the open tracheal system. Once cells are determined to their tracheal cell fate, the tracheal pits arise by invagination of each ectodermal cluster of tracheal placode cells, between 5 and 7 hours after egg laying. An example of this is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl tracheal sac formation|tracheal placode invagination biological_process owl:Class GO:0015921 biolink:NamedThing lipopolysaccharide export The directed movement of lipopolysaccharides out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl LPS export biological_process owl:Class GO:0003975 biolink:NamedThing UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UMP + N-acetyl-D-glucosaminyl-diphosphodolichol. tmpzr1t_l9r_go_relaxed.owl N-acetylglucosamine-1-phosphate transferase activity|chitobiosylpyrophosphoryldolichol synthase activity|UDP-acetylglucosamine-dolichol phosphate acetylglucosamine phosphotransferase activity|UDP-GlcNAc:dolichyl-phosphate GlcNAc-1-phosphate transferase activity|UDP-N-acetyl-D-glucosamine:dolichol phosphate N-acetyl-D-glucosamine-1-phosphate transferase activity|GlcNAc-1-P transferase activity|UDP-N-acetyl-D-glucosamine:dolichyl-phosphate N-acetyl-D-glucosaminephosphotransferase activity|dolichol phosphate N-acetylglucosamine-1-phosphotransferase activity|uridine diphosphoacetylglucosamine-dolichyl phosphate acetylglucosamine-1-phosphotransferase activity|UDP-acetylglucosamine-dolichol phosphate acetylglucosamine-1-phosphotransferase activity|UDP-D-N-acetylglucosamine N-acetylglucosamine 1-phosphate transferase activity|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosamine-1-phosphate transferase activity RHEA:13289|MetaCyc:2.7.8.15-RXN|Reactome:R-HSA-4549334|Reactome:R-HSA-446191|EC:2.7.8.15 molecular_function owl:Class GO:0009661 biolink:NamedThing chromoplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chromoplast. A chromoplast is a plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments. tmpzr1t_l9r_go_relaxed.owl chromoplast organisation|chromoplast organization and biogenesis biological_process owl:Class GO:1990014 biolink:NamedThing orthogonal array Square array of closely spaced intramembrane particles, 4-6 nm in size, that form supramolecular aggregates found in the plasma membrane of astrocytes, skeletal muscle and epithelial cells. They have been shown to contain aquaporins (water channels). tmpzr1t_l9r_go_relaxed.owl orthogonal array of particles|OAP|square array NIF_Subcellular:sao1747012216 pr 2012-12-13T20:14:15Z cellular_component owl:Class GO:0102367 biolink:NamedThing 2-alpha-hydroxytaxusin 7-beta-hydroxylase activity Catalysis of the reaction: 2alpha-hydroxytaxusin + NADPH + O2 + H+ <=> 2alpha, 7beta-dihydroxytaxusin + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13488 molecular_function owl:Class GO:0046876 biolink:NamedThing 3,4-didehydroretinal binding Binding to 3,4-didehydroretinal, a form of retinal that plays a role in the visual process in freshwater fish and some amphibians analogous to that of all-trans retinal in other vertebrates. 3,4-didehydro-11-cis-retinal combines with an opsin to form cyanopsin (cone) or porphyropsin (rod). tmpzr1t_l9r_go_relaxed.owl long-wave-sensitive opsin|blue-sensitive opsin|short-wave-sensitive opsin|violet-sensitive opsin|red-sensitive opsin|green-sensitive opsin|UV-sensitive opsin|opsin molecular_function owl:Class GO:0031738 biolink:NamedThing XCR1 chemokine receptor binding Binding to a XCR1 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl XCR1 chemokine receptor ligand|lymphotactin receptor binding molecular_function owl:Class GO:1904936 biolink:NamedThing interneuron migration The orderly movement of an interneuron from one site to another. tmpzr1t_l9r_go_relaxed.owl inter neuron migration|inter-neuron migration ah 2016-02-01T14:04:32Z biological_process owl:Class GO:1901786 biolink:NamedThing p-cresol biosynthetic process The chemical reactions and pathways resulting in the formation of p-cresol. tmpzr1t_l9r_go_relaxed.owl p-cresol synthesis|p-cresol biosynthesis|p-cresol formation|p-cresol anabolism yaf 2013-01-16T11:04:08Z biological_process owl:Class GO:0043823 biolink:NamedThing spheroidene monooxygenase activity Catalysis of the reaction: spheroidene + O2 = spheroidenone + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:33027|MetaCyc:RXN-10670|EC:1.14.15.9 molecular_function owl:Class GO:0102158 biolink:NamedThing very-long-chain 3-hydroxyacyl-CoA dehydratase activity Catalysis of the reaction: a very-long-chain (3R)-3-hydroxyacyl-CoA = H2O + a very-long-chain trans-2,3-dehydroacyl-CoA. tmpzr1t_l9r_go_relaxed.owl EC:4.2.1.134|MetaCyc:RXN-11750|RHEA:45812 molecular_function owl:Class GO:0140495 biolink:NamedThing migracytosis A cell migration-dependent mechanism for releasing cellular contents. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19760 pg 2020-07-10T15:13:46Z biological_process owl:Class GO:0033707 biolink:NamedThing 3''-deamino-3''-oxonicotianamine reductase activity Catalysis of the reaction: 2'-deoxymugineic acid + NAD(P)+ = 3''-deamino-3''-oxonicotianamine + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl 2'-deoxymugineic acid:NAD(P)+ 3''-oxidoreductase activity MetaCyc:1.1.1.285-RXN|EC:1.1.1.285 molecular_function owl:Class GO:0102677 biolink:NamedThing campesterol,NADPH:oxygen oxidoreductase activity Catalysis of the reaction: H+ + campesterol + O2 + NADPH <=> (22S)-22-hydroxycampesterol + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-4225 molecular_function owl:Class GO:0103098 biolink:NamedThing CYP79F1 tetrahomomethionine monooxygenase activity Catalysis of the reaction: 2 H+ + tetrahomomethionine + 2 O2 + 2 NADPH <=> 3 H2O + carbon dioxide + 2 NADP + 7-methylthioheptanaldoxime. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4311 molecular_function owl:Class GO:0072635 biolink:NamedThing interleukin-31 production The appearance of interleukin-31 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl interleukin-31 secretion|IL-31 production GO:0072636 biological_process owl:Class GO:0050283 biolink:NamedThing serine-sulfate ammonia-lyase activity Catalysis of the reaction: L-serine O-sulfate + H2O = pyruvate + NH3 + sulfate. tmpzr1t_l9r_go_relaxed.owl serine-sulphate ammonia-lyase activity|(L-SOS)lyase activity|L-serine-O-sulfate ammonia-lyase (pyruvate-forming) MetaCyc:SERINE-SULFATE-AMMONIA-LYASE-RXN|EC:4.3.1.10|RHEA:15605 molecular_function owl:Class GO:0046736 biolink:NamedThing induction of humoral immune response in host by virus The intentional, virally-encoded stimulation of a host humoral defense response to viral infection. tmpzr1t_l9r_go_relaxed.owl active viral induction of humoral immune response in host|active induction of humoral immune response in host by virus biological_process owl:Class GO:0003885 biolink:NamedThing D-arabinono-1,4-lactone oxidase activity Catalysis of the reaction: D-arabinono-1,4-lactone + O(2) = dehydro-D-arabinono-1,4-lactone + H(2)O(2) + H(+). tmpzr1t_l9r_go_relaxed.owl D-arabinono-1,4-lactone:oxygen oxidoreductase activity MetaCyc:1.1.3.37-RXN|RHEA:23756|KEGG_REACTION:R02715|EC:1.1.3.37 molecular_function owl:Class GO:0008820 biolink:NamedThing cobinamide phosphate guanylyltransferase activity Catalysis of the reaction: adenosylcobinamide phosphate + GTP + 2 H(+) = adenosylcobinamide-GDP + diphosphate. tmpzr1t_l9r_go_relaxed.owl AdoCbi kinase/AdoCbi-phosphate guanylyltransferase|adenosylcobinamide-phosphate guanylyltransferase activity|GTP:adenosylcobinamide-phosphate guanylyltransferase activity|CobU|GTP:cobinamide phosphate guanylyltransferase activity|adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase EC:2.7.7.62|KEGG_REACTION:R05222|RHEA:22712|MetaCyc:COBINPGUANYLYLTRANS-RXN GO:0043753 molecular_function owl:Class GO:0033965 biolink:NamedThing aculeacin-A deacylase activity Catalysis of the hydrolysis of the amide bond in aculeacin A and related neutral lipopeptide antibiotics, releasing the long-chain fatty acid side-chain. tmpzr1t_l9r_go_relaxed.owl aculeacin-A amidohydrolase activity|aculeacin A acylase activity EC:3.5.1.70|MetaCyc:3.5.1.70-RXN molecular_function owl:Class GO:0102570 biolink:NamedThing tyrosine:phenylpyruvate aminotransferase activity Catalysis of the reaction: keto-phenylpyruvate + L-tyrosine = L-phenylalanine + 3-(4-hydroxyphenyl)pyruvate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15200 molecular_function owl:Class GO:0032003 biolink:NamedThing interleukin-28 receptor binding Binding to an interleukin-28 receptor. tmpzr1t_l9r_go_relaxed.owl interleukin-28 receptor ligand|IL-28 molecular_function owl:Class GO:0018757 biolink:NamedThing deisopropylhydroxyatrazine aminohydrolase activity Catalysis of the reaction: deisopropylhydroxyatrazine + H2O = NH3 + 2,4-dihydroxy-6-(N'-ethyl)amino-1,3,5-triazine. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0121|KEGG_REACTION:R05574 molecular_function owl:Class GO:0051435 biolink:NamedThing BH4 domain binding Binding to a BH4 protein domain, present in Bcl-2 family members. All anti-apoptotic proteins contain BH1 and BH2 domains; some also contain an additional N-terminal BH4 domain, which is almost never seen in pro-apoptotic proteins. Loss of the BH4 domain can diminish or abrogate anti-apoptotic function or even impart outright death-promoting properties to the protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071818 biolink:NamedThing BAT3 complex A protein complex found in mammals that transfers tail-anchored (TA) proteins from SGTA to GET3 (ASNA1/TRC4) for targeting to the endoplasmic reticulum membrane. Also chaperones polypeptides from the endoplasmic reticulum retrotranslocation machinery to the proteasome, maintaining the solubility of substrates to improve ER-associated protein degradation (ERAD). Consists of BAG6 (BAT3) and its cofactors GET4 (TRC35) and UBL4A. tmpzr1t_l9r_go_relaxed.owl BAG6-UBL4A-TRC35 complex|Bag6 complex|BAT3-TRC35-UBL4A complex https://github.com/geneontology/go-ontology/issues/20919 mah 2010-09-07T11:01:38Z cellular_component owl:Class GO:0009978 biolink:NamedThing allene oxide synthase activity Catalysis of the reaction: 13(S)-hydroperoxylinolenate = 12,13(S)-epoxylinolenate + H2O. tmpzr1t_l9r_go_relaxed.owl hydroperoxide isomerase activity|linoleate hydroperoxide isomerase|linoleic acid hydroperoxide isomerase|(9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase activity|HPI|(9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase [(9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate-forming]|hydroperoxide dehydratase activity MetaCyc:HYDROPEROXIDE-DEHYDRATASE-RXN|MetaCyc:RXN1F-19|RHEA:25074|EC:4.2.1.92 GO:0047987 molecular_function owl:Class GO:0102881 biolink:NamedThing (+)-beta-barbatene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate <=> (+)-beta-barbatene + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8421 molecular_function owl:Class GO:0008913 biolink:NamedThing lauroyltransferase activity Catalysis of the transfer of a lauroyl (dodecanoyl) group from one compound to another. tmpzr1t_l9r_go_relaxed.owl lauroyl transferase activity molecular_function owl:Class GO:0097748 biolink:NamedThing 3'-5' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 5'-end. tmpzr1t_l9r_go_relaxed.owl RHEA:57528 pr 2016-12-02T11:51:31Z molecular_function owl:Class GO:0071172 biolink:NamedThing dihydromonapterin reductase activity Catalysis of the reaction: 7,8-dihydromonapterin + NADPH = tetrahydromonapterin + NADP+. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-23T11:10:17Z molecular_function owl:Class GO:0047026 biolink:NamedThing androsterone dehydrogenase (A-specific) activity Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD(P)+. tmpzr1t_l9r_go_relaxed.owl 3alpha-hydroxysteroid:NAD(P)+ oxidoreductase (A-specific)|3-alpha-hydroxysteroid dehydrogenase (A-specific) activity|3alpha-hydroxysteroid dehydrogenase (A-specific) EC:1.1.1.213|Wikipedia:3alpha-hydroxysteroid_dehydrogenase_(A-specific)|MetaCyc:1.1.1.213-RXN molecular_function owl:Class GO:0070521 biolink:NamedThing alpha4-beta1 integrin-CD82 complex A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD82, a member of the tetraspan family. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0048501 biolink:NamedThing signal recognition particle, plasma membrane targeting A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to or across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0001003 biolink:NamedThing RNA polymerase III type 2 promoter sequence-specific DNA binding Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 2 promoter DNA binding krc 2010-08-18T05:51:18Z GO:0001031 molecular_function owl:Class GO:0035824 biolink:NamedThing long tract gene conversion A gene conversion process in which a segment of more than 1000 base pairs is transferred from the donor to the acceptor. tmpzr1t_l9r_go_relaxed.owl bf 2011-05-04T01:06:18Z biological_process owl:Class GO:0030123 biolink:NamedThing AP-3 adaptor complex A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B). tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1905670 biolink:NamedThing TORC2 complex disassembly The disaggregation of a TORC2 complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl mTORC2 disassembly|rapamycin and nutrient-insensitive TOR complex disassembly|TORC2 disassembly|TOR complex 2 disassembly|TORC 2 complex disassembly kmv 2016-11-11T21:03:37Z biological_process owl:Class GO:0004635 biolink:NamedThing phosphoribosyl-AMP cyclohydrolase activity Catalysis of the reaction: 1-(5-phosphonatoribosyl)-5'-AMP + H(2)O = 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide. tmpzr1t_l9r_go_relaxed.owl 1-(5-phospho-D-ribosyl)-AMP 1,6-hydrolase activity|phosphoribosyladenosine monophosphate cyclohydrolase activity|PRAMP-cyclohydrolase activity EC:3.5.4.19|RHEA:20049|KEGG_REACTION:R04037|MetaCyc:HISTCYCLOHYD-RXN molecular_function owl:Class GO:0006108 biolink:NamedThing malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. tmpzr1t_l9r_go_relaxed.owl malate metabolism biological_process owl:Class GO:0031726 biolink:NamedThing CCR1 chemokine receptor binding Binding to a CCR1 chemokine receptor. tmpzr1t_l9r_go_relaxed.owl macrophage inflammatory protein-1 alpha receptor binding|CCR1 chemokine receptor ligand molecular_function owl:Class GO:1990623 biolink:NamedThing Herring body The dilated terminal portions of neurosecretory axons constituting the hypothalamohypophyseal tract, found in close proximity to sinusoidal capillaries in the posterior pituitary. Herring bodies consist of aggregates of membrane-bound neurosecretory vesicles where oxytocin or antidiuretic hormone (ADH) are stored prior to release. Each Herring body also contains ATP and either neurophysin I or neurophysin II which bind to oxytocin and ADH, respectively. tmpzr1t_l9r_go_relaxed.owl neurosecretory body cls 2015-01-29T21:11:54Z cellular_component owl:Class GO:0036225 biolink:NamedThing cellular response to vitamin B1 starvation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of vitamin B1 (also called thiamin and thiamine). tmpzr1t_l9r_go_relaxed.owl cellular response to thiamin starvation|cellular response to vitamin B1 deprivation bf 2012-05-09T02:35:55Z biological_process owl:Class GO:0050888 biolink:NamedThing determination of stimulus location The determination of where on the body surface, within the body or in the environment a stimulus originates. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044589 biolink:NamedThing pectin binding Binding to pectin. tmpzr1t_l9r_go_relaxed.owl jl 2012-04-26T01:26:56Z molecular_function owl:Class GO:0004475 biolink:NamedThing mannose-1-phosphate guanylyltransferase activity Catalysis of the reaction: alpha-D-mannose 1-phosphate + GTP = diphosphate + GDP-alpha-D-mannose. tmpzr1t_l9r_go_relaxed.owl PIM-GMP (phosphomannose isomerase-guanosine 5'-diphospho-D-mannose pyrophosphorylase)|guanosine 5'-diphospho-D-mannose pyrophosphorylase activity|GDP-mannose pyrophosphorylase activity|guanosine diphosphomannose pyrophosphorylase activity|GTP:mannose-1-phosphate guanylyltransferase activity|mannose 1-phosphate guanylyltransferase (guanosine triphosphate)|GTP:alpha-D-mannose-1-phosphate guanylyltransferase activity|GTP-mannose-1-phosphate guanylyltransferase activity|guanosine triphosphate-mannose 1-phosphate guanylyltransferase activity KEGG_REACTION:R00885|MetaCyc:2.7.7.13-RXN|EC:2.7.7.13|RHEA:15229|Reactome:R-HSA-446221 molecular_function owl:Class GO:0060826 biolink:NamedThing transforming growth factor beta receptor signaling pathway involved in neural plate anterior/posterior pattern formation A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the formation of the neural plate anterior/posterior pattern. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor signalling pathway involved in neural plate anterior/posterior pattern formation dph 2009-08-11T01:43:29Z biological_process owl:Class GO:0015915 biolink:NamedThing fatty-acyl group transport The directed movement of fatty acyl groups into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A fatty acyl group is any acyl group derived from a fatty acid. tmpzr1t_l9r_go_relaxed.owl fatty acyl transport biological_process owl:Class GO:0032837 biolink:NamedThing distributive segregation The cell cycle process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during a normally chiasmate meiosis under the condition that chiasma have not occurred between a particular pair of homologs. Distributive segregation is a backup mechanism to ensure the segregation of homologs that have failed to cross over - either as a consequence of mutation or not, as, for example, the 4th chromosome of Drosophila melanogaster (which never exchanges, presumably due to its small size) - but nevertheless segregate normally. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0004350 biolink:NamedThing glutamate-5-semialdehyde dehydrogenase activity Catalysis of the reaction: L-glutamate 5-semialdehyde + NADP(+) + phosphate = L-glutamyl 5-phosphate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl glutamate-phosphate reductase activity|gamma-glutamyl phosphate reductase activity|glutamate-gamma-semialdehyde dehydrogenase activity|gamma-glutamylphosphate reductase activity|L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)|glutamyl-gamma-semialdehyde dehydrogenase activity|glutamylphosphate reductase activity|beta-glutamylphosphate reductase activity|glutamate semialdehyde dehydrogenase activity MetaCyc:GLUTSEMIALDEHYDROG-RXN|KEGG_REACTION:R03313|RHEA:19541|EC:1.2.1.41 GO:0001513 molecular_function owl:Class GO:0047232 biolink:NamedThing galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,6-N-acetylglucosaminyltransferase activity Catalysis of the reaction: D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-1,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosyceramide + UDP. tmpzr1t_l9r_go_relaxed.owl UDP-N-acetyl-D-glucosamine:D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,6-N-acetylglucosaminyltransferase activity|uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->6-acetylglucosaminyltransferase MetaCyc:2.4.1.164-RXN|EC:2.4.1.164 molecular_function owl:Class GO:0033942 biolink:NamedThing 4-alpha-D-(1->4)-alpha-D-glucanotrehalose trehalohydrolase activity Catalysis of the hydrolysis of alpha-(1->4)-D-glucosidic linkage in 4-alpha-D-{(1->4)-alpha-D-glucanosyl}n trehalose to yield trehalose and alpha-(1->4)-D-glucan. tmpzr1t_l9r_go_relaxed.owl 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose glucanohydrolase (trehalose-producing) activity|maltooligosyl trehalose trehalohydrolase activity|4-alpha-D-{(1,4)-alpha-D-glucano}trehalose glucanohydrolase (trehalose-producing) activity|malto-oligosyltrehalose trehalohydrolase activity EC:3.2.1.141|MetaCyc:3.2.1.141-RXN molecular_function owl:Class GO:0034862 biolink:NamedThing 2,6-dihydroxybenzothiazole monooxygenase activity Catalysis of the reaction: 2,6-dihydroxybenzothiazole + 1/2 O2 = 2,6,7-trihydroxybenzothiazole. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1294 molecular_function owl:Class GO:0010347 biolink:NamedThing L-galactose-1-phosphate phosphatase activity Catalysis of the reaction: L-galactose-1-phosphate + H2O = L-galactose + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:26349|MetaCyc:RXNQT-4142 molecular_function owl:Class GO:0018633 biolink:NamedThing dimethyl sulfide monooxygenase activity Catalysis of the reaction: dimethyl sulfide + NADH + O2 = NAD+ + OH- + methanethiol + formaldehyde. tmpzr1t_l9r_go_relaxed.owl dimethyl sulphide monooxygenase activity EC:1.14.13.-|UM-BBD_reactionID:r0208 molecular_function owl:Class GO:0090695 biolink:NamedThing Wpl/Pds5 cohesin loading/unloading complex A eukaryotically conserved heterodimeric protein complex (comprising Wings apart-like protein and the Pds5 Armadillo repeat cohesin associated protein) involved in the loading and unloading of a cohesin complex onto DNA. tmpzr1t_l9r_go_relaxed.owl tb 2016-08-24T17:09:11Z cellular_component owl:Class GO:0061320 biolink:NamedThing pericardial nephrocyte differentiation The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a pericardial nephrocyte. A pericardial nephrocyte is an insect renal cell that filters hemolymph and is found with other pericardial nephrocytes in two rows flanking the dorsal vessel. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. tmpzr1t_l9r_go_relaxed.owl pericardial cell differentiation dph 2010-09-24T12:25:53Z GO:0007513 biological_process owl:Class GO:0047124 biolink:NamedThing L-erythro-3,5-diaminohexanoate dehydrogenase activity Catalysis of the reaction: (3S,5S)-3,5-diaminohexanoate + H(2)O + NAD(+) = (S)-5-amino-3-oxo-hexanoate + H(+) + NADH + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl L-erythro-3,5-diaminohexanoate:NAD+ oxidoreductase (deaminating)|L-3,5-diaminohexanoate dehydrogenase activity EC:1.4.1.11|KEGG_REACTION:R03349|MetaCyc:1.4.1.11-RXN|RHEA:19633 molecular_function owl:Class GO:0098626 biolink:NamedThing methylseleninic acid reductase activity Catalysis of the reaction: NADPH + H+ + CH3SeO2H => NADP+ + CH3SeOH + H2O. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-5263616 molecular_function owl:Class GO:0047665 biolink:NamedThing aminolevulinate transaminase activity Catalysis of the reaction: 5-aminolevulinate + pyruvate = 4,5-dioxopentanoate + L-alanine. tmpzr1t_l9r_go_relaxed.owl gamma,delta-dioxovaleric acid transaminase activity|L-alanine-4,5-dioxovalerate aminotransferase activity|L-alanine:4,5-dioxovaleric acid transaminase activity|4,5-dioxovalerate aminotransferase activity|4,5-dioxovaleric acid aminotransferase activity|aminolevulinic acid transaminase activity|4,5-dioxovaleric transaminase activity|gamma,delta-dioxovalerate aminotransferase activity|4,5-dioxovaleric acid transaminase activity|alanine:4,5-dioxovalerate aminotransferase activity|dioxovalerate transaminase activity|DOVA transaminase activity|alanine-dioxovalerate aminotransferase activity|alanine-gamma,delta-dioxovalerate aminotransferase activity|aminolevulinate aminotransferase activity|5-aminolevulinate:pyruvate aminotransferase activity|L-alanine:dioxovalerate transaminase activity|5-aminolevulinic acid transaminase activity EC:2.6.1.43|MetaCyc:AMINOLEVULINATE-AMINOTRANSFERASE-RXN|RHEA:12480|KEGG_REACTION:R02271 molecular_function owl:Class GO:0102351 biolink:NamedThing gamma-aminobutyrate transaminase (glyoxylate dependent) activity Catalysis of the reaction: gamma-aminobutyric acid + 2-oxo monocarboxylic acid anion = 4-oxobutanoate + glycine. tmpzr1t_l9r_go_relaxed.owl EC:2.6.1.96|RHEA:32267|MetaCyc:RXN-13328 molecular_function owl:Class GO:0043721 biolink:NamedThing 4-hydroxybutanoyl-CoA dehydratase activity Catalysis of the reaction: 4-hydroxybutanoyl-CoA = vinylacetyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl 4-hydroxybutanoyl-CoA hydro-lyase|gamma-hydroxybutyryl-CoA dehydratase activity|4-hydroxybutyryl-CoA dehydratase activity|gamma-hydroxybutanoyl-CoA dehydratase activity MetaCyc:RXN-8890|RHEA:26530|EC:4.2.1.120|KEGG_REACTION:R05337 molecular_function owl:Class GO:0016656 biolink:NamedThing monodehydroascorbate reductase (NADH) activity Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate. tmpzr1t_l9r_go_relaxed.owl MDAsA reductase (NADPH)|NADH:semidehydroascorbic acid oxidoreductase activity|NADH:ascorbate radical oxidoreductase activity|SDA reductase activity|NADH:AFR oxidoreductase activity|MDHA|NADH-semidehydroascorbate oxidoreductase activity|ascorbic free radical reductase activity|AFR-reductase activity|NADH:monodehydroascorbate oxidoreductase activity|semidehydroascorbate reductase activity|monodehydroascorbate reductase activity|AFR|ascorbate free radical reductase activity|ascorbate free-radical reductase activity RHEA:14581|MetaCyc:1.6.5.4-RXN|EC:1.6.5.4 molecular_function owl:Class GO:0070530 biolink:NamedThing K63-linked polyubiquitin modification-dependent protein binding Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 63 in the target protein. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:1990434 biolink:NamedThing lower tip-link density An electron-dense plaque at the lower end of a stereocilia tip link that provides the anchor in the stereocilia membrane at the tip of the stereocilium from which the tip link rises. tmpzr1t_l9r_go_relaxed.owl LTLD sl 2014-07-30T16:34:34Z cellular_component owl:Class GO:0030014 biolink:NamedThing CCR4-NOT complex The Ccr4-Not complex is an eukaryotically conserved deadenylase that can initiate cytoplasmic mRNA decay, and reduce translation by releasing poly(A)-binding protein (Pab1/PABPC1). Ccr4-Not contains seven core subunits, including two poly(A)-specific exonucleases, Ccr4/CNOT6/CNOT6L and Caf1/Pop2/CNOT7/CNOT8. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:1990017 biolink:NamedThing somatic portion of tanycyte Portion of a tanycyte that lies within the ependyma and contains the nucleus. A tanycyte is a specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS. tmpzr1t_l9r_go_relaxed.owl somatic portion NIF_Subcellular:sao401910342 pr 2012-12-19T15:19:25Z cellular_component owl:Class GO:0008771 biolink:NamedThing [citrate (pro-3S)-lyase] ligase activity Catalysis of the reaction: ATP + acetate + (citrate (pro-3S)-lyase) (thiol form) = AMP + diphosphate + (citrate (pro-3S)-lyase) (acetyl form). tmpzr1t_l9r_go_relaxed.owl acetate: SH-acyl-carrier-protein enzyme ligase (AMP)|citrate (pro-3S)-lyase ligase activity|citrate lyase synthetase activity|acetate:citrate-(pro-3S)-lyase(thiol-form) ligase (AMP-forming)|citrate lyase ligase activity|acetate:HS-citrate lyase ligase activity EC:6.2.1.22|KEGG_REACTION:R04449|MetaCyc:CITC-RXN|RHEA:23788 molecular_function owl:Class GO:0018670 biolink:NamedThing 4-aminobenzoate 1-monooxygenase activity Catalysis of the reaction: 4-aminobenzoate + NADPH + H+ + O2 = 4-hydroxyaniline + NADP+ + H2O + CO2. tmpzr1t_l9r_go_relaxed.owl 4-aminobenzoate monooxygenase activity|4-aminobenzoate dehydrogenase activity|4-aminobenzoate hydroxylase activity|4-aminobenzoate,NAD(P)H:oxygen oxidoreductase (1-hydroxylating, decarboxylating) MetaCyc:4-AMINOBENZOATE-1-MONOOXYGENASE-RXN|EC:1.14.13.27|UM-BBD_reactionID:r0597 molecular_function owl:Class GO:0070711 biolink:NamedThing RNA adenosine-uridine insertion The modification of an RNA molecule by insertion of an adenosine-uridine dinucleotide. tmpzr1t_l9r_go_relaxed.owl RNA AU insertion mah 2009-06-08T05:16:39Z biological_process owl:Class GO:0010487 biolink:NamedThing thermospermine synthase activity Catalysis of the reaction: S-adenosyl-L-methioninamine + spermidine = S-methyl-5'-thioadenosine + thermospermine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11190|EC:2.5.1.79|RHEA:30515 molecular_function owl:Class GO:0034360 biolink:NamedThing chylomicron remnant A lipoprotein particle that is derived from a mature chylomicron particle by the removal of triglycerides from the chylomicron core by lipoprotein lipase and the subsequent loss of surface components. It characteristically contains apolipoprotein E (APOE) and is cleared from the blood by the liver. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0045031 biolink:NamedThing G protein-coupled ATP receptor activity Combining with ATP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl ATP-activated adenosine receptor activity|ATP-activated nucleotide receptor activity molecular_function owl:Class GO:0034563 biolink:NamedThing 2,3-bis(4-hydroxyphenyl)-1,2-propanediol dioxygenase activity Catalysis of the reaction: 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + O2 = 4-hydroxyphenacyl alcohol + 4-hydroxybenzoate + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0867 molecular_function owl:Class GO:0010492 biolink:NamedThing maintenance of shoot apical meristem identity The process in which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102590 biolink:NamedThing delphinidin 3-O-rutinoside 7-O-glucosyltransferase (acyl-glucose dependent) activity Catalysis of the reaction: delphinidin 3-O-rutinoside + 1-O-4-hydroxybenzoyl-beta-D-glucose <=> delphinidin 3-O-rutinoside-7-O-glucoside + 4-hydroxybenzoic acid + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15351 molecular_function owl:Class GO:1990685 biolink:NamedThing HDL-containing protein-lipid-RNA complex A protein-lipid-RNA complex containing separate high-density lipoprotein (HDL), lipid and RNA molecules. Separate in this context means not covalently bound to each other. tmpzr1t_l9r_go_relaxed.owl Examples of HDL-containing protein-lipid-RNA complexes are described in PMID:21423178 and PMID:23559634, both showing evidence that high-density lipoproteins (HDL) transport endogenous microRNAs (miRNAs) and deliver them to recipient cells with functional targeting capabilities. Also see fig. 1 in the review PMID:22028337. Not to be confused with GO:0034364 'high-density lipoprotein particle', which describes complexes of proteins and lipids only, without RNAs. pr 2015-03-11T14:56:52Z cellular_component owl:Class GO:0031220 biolink:NamedThing maltodextrin phosphorylase activity Catalysis of the reaction: maltodextrin = glucose-1-phosphate. tmpzr1t_l9r_go_relaxed.owl RHEA:29691|MetaCyc:RXN0-5182|MetaCyc:RXN-9025 molecular_function owl:Class GO:0004300 biolink:NamedThing enoyl-CoA hydratase activity Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O. tmpzr1t_l9r_go_relaxed.owl enoyl coenzyme A hydrase (D)|2-octenoyl coenzyme A hydrase activity|short-chain enoyl-CoA hydratase activity|enoyl hydrase activity|acyl coenzyme A hydrase activity|(3S)-3-hydroxyacyl-CoA hydro-lyase activity|enoyl coenzyme A hydratase activity|ECH|D-3-hydroxyacyl-CoA dehydratase|beta-hydroxyacyl-CoA dehydrase activity|trans-2-enoyl-CoA hydratase activity|beta-hydroxyacid dehydrase activity|crotonyl hydrase activity|hydratase, enoyl coenzyme A|enoyl coenzyme A hydrase (L)|2-enoyl-CoA hydratase activity|enol-CoA hydratase activity|short chain enoyl coenzyme A hydratase activity|unsaturated acyl-CoA hydratase activity UM-BBD_enzymeID:e0014|RHEA:16105|MetaCyc:ENOYL-COA-HYDRAT-RXN|Reactome:R-HSA-77344|Reactome:R-HSA-77301|Reactome:R-HSA-70870|Reactome:R-HSA-77325|Reactome:R-HSA-70830|Reactome:R-HSA-77314|Reactome:R-HSA-77333|EC:4.2.1.17|Reactome:R-HSA-77277|Reactome:R-HSA-77256 GO:0016510 molecular_function owl:Class GO:0047876 biolink:NamedThing endoglycosylceramidase activity Catalysis of the reaction: H2O + oligoglycosylglucosylceramide = ceramide + oligoglycosylglucose. tmpzr1t_l9r_go_relaxed.owl oligoglycosylglucosylceramide glycohydrolase activity|EGCase activity|glycosyl-N-acetyl-sphingosine 1,1-beta-D-glucanohydrolase activity|endoglycoceramidase activity|endo-glucosylceramidase activity MetaCyc:ENDOGLYCOSYLCERAMIDASE-RXN|RHEA:22288|EC:3.2.1.123 molecular_function owl:Class GO:0019992 biolink:NamedThing diacylglycerol binding Binding to a diacylglycerol, a diester of glycerol and two fatty acids. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102424 biolink:NamedThing sesaminol-2-O-gentiobioside 1,6-glucosyltransferase activity Catalysis of the reaction: (+)-sesaminol 2-O-beta-D-gentiobioside + UDP-alpha-D-glucose <=> (+)-sesaminol 2-O-beta-D-gentiotrioside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13821 molecular_function owl:Class GO:0033828 biolink:NamedThing glucosylglycerol-phosphate synthase activity Catalysis of the reaction: sn-glycerol 3-phosphate + ADP-glucose = 2-O-(beta-D-glucosyl)-sn-glycerol 3-phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl GG-phosphate synthase activity|ADP-glucose:sn-glycerol-3-phosphate 2-beta-D-glucosyltransferase activity|glucosyl-glycerol-phosphate synthase activity|ADPglucose:sn-glycerol-3-phosphate 2-beta-D-glucosyltransferase activity|GGPS RHEA:12881|EC:2.4.1.213|KEGG_REACTION:R05328|MetaCyc:2.4.1.213-RXN molecular_function owl:Class GO:0018831 biolink:NamedThing 5-chloro-1,2,4-trihydroxybenzene dechlorinase activity Catalysis of the reaction: 5-chloro-1,2,4-trihydroxybenzene = Cl- + H+ + 2-hydroxy-1,4-benzoquinone. tmpzr1t_l9r_go_relaxed.owl EC:4.5.1.-|UM-BBD_reactionID:r0666 molecular_function owl:Class GO:0034540 biolink:NamedThing 3-monobromobisphenol A reductive dehalogenase activity Catalysis of the reaction: 3-monobromobisphenol A + 2 H+ + 2 e- = bisphenol A + HBr. tmpzr1t_l9r_go_relaxed.owl EC:1.97.1.-|UM-BBD_reactionID:r0824 molecular_function owl:Class GO:0046740 biolink:NamedThing transport of virus in host, cell to cell The transport of a virus between adjacent cells in a multicellular organism. tmpzr1t_l9r_go_relaxed.owl intercellular virus transport|spread of virus in host, cell to cell|spread of virus within host, cell to cell|viral spread within host, cell to cell|cell to cell spread of virus within host VZ:1018 biological_process owl:Class GO:0102843 biolink:NamedThing 1-18:2-2-16:0-monogalactosyldiacylglycerol desaturase activity (SN2-16:1 forming) Catalysis of the reaction: 1-18:2-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8304|EC:1.14.19.42|RHEA:46756 molecular_function owl:Class GO:0032792 biolink:NamedThing negative regulation of CREB transcription factor activity Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor CREB. tmpzr1t_l9r_go_relaxed.owl CREB inhibitor|inhibition of CREB transcription factor biological_process owl:Class GO:0098561 biolink:NamedThing methyl accepting chemotaxis protein complex A transmembrane protein complex that consists of multiple methyl-accepting chemoreceptor protein subunits, a histidine kinase and a connector protein and which functions in the regulation of flagellar rotary motor activity in response to an external chemical stimulus. tmpzr1t_l9r_go_relaxed.owl A number of complexes of this class are found in E.coli. cellular_component owl:Class GO:0106036 biolink:NamedThing assembly of apicomedial cortex actomyosin A process which results in the assembly or arrangement of constituent parts apicomedial cortex actomyosin. tmpzr1t_l9r_go_relaxed.owl hjd 2017-07-12T16:57:06Z biological_process owl:Class GO:0002416 biolink:NamedThing IgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor The process of transporting IgG immunoglobulin, via transcytosis using the FcRn (also known as the neonatal Fc receptor; gene name FCGRT), from apical surface of an epithelial cell to the basolateral surface or vice versa depending on the location. This process is used for uptake of IgG from the milk in the gut in rodents, for transplacental transport of IgG from mother to embryo in humans, and for maintenance of a steady-state distribution of IgG across epithelial boundaries in general in adult mammals. tmpzr1t_l9r_go_relaxed.owl IgG immunoglobulin transcytosis in epithelial cells mediated by neonatal immunoglobulin receptor|IgG antibody transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor biological_process owl:Class GO:0034611 biolink:NamedThing oligoribonucleotidase activity Catalysis of the exonucleolytic cleavage of oligoribonucleotides to yield ribonucleoside 5'-phosphates. tmpzr1t_l9r_go_relaxed.owl RNA oligonucleotidase activity Reactome:R-HSA-9615042|Reactome:R-HSA-9009950 molecular_function owl:Class GO:0106409 biolink:NamedThing cyclic-di-AMP phosphodiesterase activity Catalysis of the reaction: 3',3'-c-di-AMP + H2O = 5'-O-phosphonoadenylyl-(3'-5')-adenosine + H+. tmpzr1t_l9r_go_relaxed.owl EC:3.1.4.59|MetaCyc:RXN-19814|RHEA:54420 hjd 2021-10-29 14:57:11+00:00 molecular_function owl:Class GO:0050081 biolink:NamedThing maltose-6'-phosphate glucosidase activity Catalysis of the reaction: H2O + maltose 6'-phosphate = D-glucose + D-glucose 6-phosphate. tmpzr1t_l9r_go_relaxed.owl maltose-6'-phosphate 6-phosphoglucohydrolase activity|phospho-alpha-glucosidase activity MetaCyc:MALTOSE-6-PHOSPHATE-GLUCOSIDASE-RXN|RHEA:20421|EC:3.2.1.122 molecular_function owl:Class GO:0019785 biolink:NamedThing ISG15-specific protease activity Catalysis of the hydrolysis of ISG15, a small ubiquitin-related modifier, from previously modified substrates. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-1678841|Reactome:R-HSA-5653786 molecular_function owl:Class GO:0032810 biolink:NamedThing sterol response element binding Binding to a sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism. tmpzr1t_l9r_go_relaxed.owl SRE binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. molecular_function owl:Class GO:0030153 biolink:NamedThing bacteriocin immunity A process that mediates resistance to a bacteriocin: any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0071180 biolink:NamedThing MAML3-RBP-Jkappa-ICN2 complex A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling. tmpzr1t_l9r_go_relaxed.owl MAML3-RBP-Jkappa-Notch2 complex mah 2009-11-23T02:51:29Z cellular_component owl:Class GO:0047117 biolink:NamedThing enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity Catalysis of the reaction: acyl-[acyl-carrier protein] + NADP+ = trans-D2-enoyl-[acyl-carrier protein] + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl enoyl-acyl-carrier-protein reductase (NADPH, A-specific)|enoyl-acyl carrier protein (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|enoyl-[acyl-carrier protein] reductase (NADPH, A-specific) activity|enoyl-ACp reductase activity|acyl-acyl-carrier-protein:NADP+ oxidoreductase (A-specific)|enoyl-ACP reductase (NADPH, A-specific) activity EC:1.3.1.39|MetaCyc:1.3.1.39-RXN molecular_function owl:Class GO:0005725 biolink:NamedThing intercalary heterochromatin Any of the regions of heterochromatin that form a reproducible set of dense bands scattered along the euchromatic arms in polytene chromosomes. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0050038 biolink:NamedThing L-xylulose reductase (NADP+) activity Catalysis of the reaction: NADP(+) + xylitol = L-xylulose + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl L-xylulose reductase activity EC:1.1.1.10|Reactome:R-HSA-5662851|MetaCyc:L-XYLULOSE-REDUCTASE-RXN|RHEA:17025|KEGG_REACTION:R01904|Reactome:R-HSA-5661240 molecular_function owl:Class GO:0008930 biolink:NamedThing methylthioadenosine nucleosidase activity Catalysis of the reaction: methylthioadenosine + H2O = adenine + 5-methylthio-D-ribose. tmpzr1t_l9r_go_relaxed.owl MTA nucleosidase activity|5'-methylthioadenosine nucleosidase activity|S-methyl-5'-thioadenosine adeninehyrolase activity|MeSAdo nucleosidase activity|methylthioadenosine methylthioribohydrolase activity RHEA:13617|EC:3.2.2.16|MetaCyc:METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN molecular_function owl:Class GO:0031930 biolink:NamedThing mitochondria-nucleus signaling pathway A series of molecular signals that forms a pathway of communication from the mitochondria to the nucleus and initiates cellular changes in response to changes in mitochondrial function. tmpzr1t_l9r_go_relaxed.owl mitochondrial signaling pathway|mitochondrial signalling pathway|retrograde response|mitochondria-nucleus signal transduction biological_process owl:Class GO:0090689 biolink:NamedThing cleavage furrow leading edge The 'trough' of the cleavage furrow. This is the part of the cleavage furrow closest to the contractile ring. tmpzr1t_l9r_go_relaxed.owl tb 2016-07-26T16:00:10Z cellular_component owl:Class GO:0003883 biolink:NamedThing CTP synthase activity Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. tmpzr1t_l9r_go_relaxed.owl cytidine 5'-triphosphate synthetase activity|UTP--ammonia ligase activity|UTP:ammonia ligase (ADP-forming)|CTP synthetase activity|cytidine triphosphate synthetase activity|uridine triphosphate aminase activity EC:6.3.4.2|MetaCyc:CTPSYN-RXN|Reactome:R-HSA-73647|RHEA:16597|Reactome:R-HSA-504054 molecular_function owl:Class GO:0015856 biolink:NamedThing cytosine transport The directed movement of cytosine, 4-amino-2-hydroxypyrimidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl cytosine transmembrane transport biological_process owl:Class GO:0003881 biolink:NamedThing CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity Catalysis of the reaction: myo-inositol + CDP-diacylglycerol = 1-phosphatidyl-1D-myo-inositol + CMP + H(+). tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol synthase activity|CDP-diglyceride-inositol transferase activity|CDP-diacylglycerol:myo-inositol-3-phosphatidyltransferase activity|CDP diglyceride-inositol phosphatidyltransferase activity|cytidine diphosphodiglyceride-inositol phosphatidyltransferase activity|CDP-DG:inositol transferase activity|CDP-diacylglycerol:myo-inositol 3-phosphatidyltransferase activity|CDP-diglyceride:inositol transferase activity|CDPdiacylglycerol-inositol 3-phosphatidyltransferase activity|cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:myo-inositol 3-phosphatidyltransferase activity|cytidine diphosphoglyceride-inositol transferase activity|CDP-diacylglycerol--inositol phosphatidyltransferase activity|cytidine diphosphoglyceride-inositol phosphatidyltransferase activity KEGG_REACTION:R01802|RHEA:11580|MetaCyc:2.7.8.11-RXN|Reactome:R-HSA-1482976|EC:2.7.8.11 molecular_function owl:Class GO:0080061 biolink:NamedThing indole-3-acetonitrile nitrilase activity Catalysis of the reaction: indole-3-acetonitrile + 2 H2O = indole-3-acetic acid + NH3. tmpzr1t_l9r_go_relaxed.owl EC:3.5.5.1|RHEA:45776|MetaCyc:RXN-1404 dhl 2009-04-13T03:30:42Z molecular_function owl:Class GO:0140595 biolink:NamedThing MIM complex A large mitochondrial outer membrane translocase complex that mediates transport of proteins into mitochondrial compartments. MIM constitutes the major integration site for alpha-helical embedded proteins. In yeast, consists oof Mim1 and Mim2. tmpzr1t_l9r_go_relaxed.owl mitochondrial outer import machinery https://github.com/geneontology/go-ontology/issues/20669 pg 2021-02-09T19:34:16Z cellular_component owl:Class GO:0061755 biolink:NamedThing positive regulation of circulating fibrinogen levels Any process that increases the quantity of fibrinogen circulating in the bloodstream. tmpzr1t_l9r_go_relaxed.owl dph 2016-02-29T16:26:49Z biological_process owl:Class GO:0061368 biolink:NamedThing behavioral response to formalin induced pain Any process that results in a change in the behaviour of an organism as a result of a formalin pain stimulus. tmpzr1t_l9r_go_relaxed.owl dph 2010-10-21T03:29:48Z biological_process owl:Class GO:0010184 biolink:NamedThing cytokinin transport The directed movement of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102128 biolink:NamedThing chalcone synthase activity Catalysis of the reaction: 4-dihydrocoumaroyl-CoA + 3 malonyl-CoA + 3 H+ = phloretin + 4 coenzyme A + 3 carbon dioxide. tmpzr1t_l9r_go_relaxed.owl EC:2.3.1.74|MetaCyc:RXN-11468 molecular_function owl:Class GO:0035651 biolink:NamedThing AP-3 adaptor complex binding Binding to an AP-3 adaptor complex. The AP-3 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B). tmpzr1t_l9r_go_relaxed.owl bf 2011-01-25T10:59:36Z molecular_function owl:Class GO:1990535 biolink:NamedThing neuron projection maintenance The organization process that preserves a neuron projection in a stable functional or structural state. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite. tmpzr1t_l9r_go_relaxed.owl neuron process maintenance|neuron protrusion maintenance|axon maintenance|neurite maintenance|axon homeostasis|neuronal cell projection maintenance kmv 2014-11-13T22:24:05Z biological_process owl:Class GO:0080165 biolink:NamedThing callose deposition in phloem sieve plate Any process in which callose is transported to, and/or maintained in, phloem sieve plate. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. tmpzr1t_l9r_go_relaxed.owl dhl 2010-09-23T04:12:49Z biological_process owl:Class GO:0033976 biolink:NamedThing 2-haloacid dehalogenase (configuration-inverting) activity Catalysis of the reactions: (S)-2-haloacid + H2O = (R)-2-hydroxyacid + halide, and (R)-2-haloacid + H2O = (S)-2-hydroxyacid + halide. tmpzr1t_l9r_go_relaxed.owl DL-2-haloacid halidohydrolase (inversion of configuration) activity|DL-DEXi|2-haloalkanoic acid dehalogenase activity|DL-2-haloacid dehalogenase (inversion of configuration) activity|2-haloalkanoid acid halidohydrolase activity|DL-2-haloacid dehalogenase activity MetaCyc:3.8.1.10-RXN molecular_function owl:Class GO:0033908 biolink:NamedThing beta-L-rhamnosidase activity Catalysis of the hydrolysis of terminal, non-reducing beta-L-rhamnose residues in beta-L-rhamnosides. tmpzr1t_l9r_go_relaxed.owl beta-L-rhamnoside rhamnohydrolase activity MetaCyc:3.2.1.43-RXN|EC:3.2.1.43 molecular_function owl:Class GO:0106344 biolink:NamedThing 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase activity from histidine and PLP Catalysis of the reaction: 2 Fe(3+) + 4 H2O + L-histidyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] + N(6)-(pyridoxal phosphate)-L-lysyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] = (2S)-2-amino-5-hydroxy-4-oxopentanoyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] + 3-oxopropanoate + 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + 2 Fe(2+) + 2 H(+) + L-lysyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20274 RHEA:65756 hjd 2020-12-04T14:48:37Z molecular_function owl:Class GO:0102749 biolink:NamedThing dihydrogeranylgeranyl-chlorophyll a reductase activity Catalysis of the reaction: H+ + dihydrogeranylgeranyl-chlorophyll a + NADPH = tetrahydrogeranylgeranyl-chlorophyll a + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7665 molecular_function owl:Class GO:0043906 biolink:NamedThing Ala-tRNA(Pro) hydrolase activity Catalysis of the hydrolysis of misacylated Ala-tRNA(Pro). tmpzr1t_l9r_go_relaxed.owl Ala-tRNAPro hydrolase activity EC:3.1.1.- molecular_function owl:Class GO:0033437 biolink:NamedThing ACU codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an ACU codon. tmpzr1t_l9r_go_relaxed.owl ACT codon-amino acid adaptor activity|threonine tRNA Note that in the standard genetic code, ACT codes for threonine. molecular_function owl:Class GO:0106405 biolink:NamedThing isoprenoid diphosphate phosphatase activity Catalysis of the dephosphorylation of isoprenoid diphosphates. tmpzr1t_l9r_go_relaxed.owl hjd 2021-10-13 20:29:36+00:00 molecular_function owl:Class GO:0043718 biolink:NamedThing 2-hydroxymethylglutarate dehydrogenase activity Catalysis of the reaction: 2-(hydroxymethyl)glutarate + NAD(+) = 2-formylglutarate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl HgD|(S)-2-hydroxymethylglutarate:NAD+ oxidoreductase activity Wikipedia:2-hydroxymethylglutarate_dehydrogenase|KEGG_REACTION:R07985|RHEA:15505|MetaCyc:1.1.1.291-RXN|EC:1.1.1.291 molecular_function owl:Class GO:0018612 biolink:NamedThing dibenzothiophene dioxygenase activity Catalysis of the reaction: dibenzothiophene + NADH + O2 + H+ = NAD+ + cis-1,2-dihydroxy-1,2-dihydrodibenzothiophene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0160|EC:1.14.12.- molecular_function owl:Class GO:0052934 biolink:NamedThing alcohol dehydrogenase (cytochrome c) activity Catalysis of the reaction: 2 [Fe(III)cytochrome c] + a primary alcohol = 2 [Fe(II)cytochrome c] + an aldehyde + 2 H+. tmpzr1t_l9r_go_relaxed.owl PQQ-dependent alcohol dehydrogenase activity|quinoprotein alcohol dehydrogenase activity|2-chloroethanol:cytochrome c oxidoreductase activity|alcohol dehydrogenase (acceptor) activity|alcohol:acceptor oxidoreductase activity|ethanol:cytochrome c oxidoreductase activity|alcohol:(acceptor) oxidoreductase activity|alcohol:cytochrome c oxidoreductase activity https://github.com/geneontology/go-ontology/issues/21412 KEGG_REACTION:R05285|UM-BBD_enzymeID:e0004|EC:1.1.2.8|KEGG_REACTION:R05198|MetaCyc:RXN-11333|RHEA:51020 GO:0018468|GO:0052935|GO:0052936 molecular_function owl:Class GO:0102294 biolink:NamedThing cholesterol dehydrogenase activity Catalysis of the reaction: cholesterol + NAD = cholest-5-en-3-one + NADH + H+. tmpzr1t_l9r_go_relaxed.owl RHEA:35459|EC:1.1.1.145|MetaCyc:RXN-12693 molecular_function owl:Class GO:0019799 biolink:NamedThing tubulin N-acetyltransferase activity Catalysis of the reaction: acetyl-CoA + (alpha-tubulin) L-lysine = CoA + (alpha-tubulin) N6-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl tubulin acetyltransferase activity|acetyl-CoA:alpha-tubulin-L-lysine N6-acetyltransferase activity|alpha-tubulin N-acetyltransferase activity|TAT activity|acetyl-CoA:alpha-tubulin-L-lysine 6-N-acetyltransferase activity|alpha-tubulin acetyltransferase activity|acetyl-CoA:alpha-tubulin-lysine N-acetyltransferase activity|alpha-tubulin acetylase activity RHEA:15277|MetaCyc:TUBULIN-N-ACETYLTRANSFERASE-RXN|EC:2.3.1.108 molecular_function owl:Class GO:0033814 biolink:NamedThing propanoyl-CoA C-acyltransferase activity Catalysis of the reaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA + propanoyl-CoA = CoA + 3alpha,7alpha,12alpha-trihydroxy-24-oxo-5beta-cholestanoyl-CoA. tmpzr1t_l9r_go_relaxed.owl sterol carrier protein-chi|sterol carrier protein-X|SCP-X|3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase activity|peroxisomal thiolase 2 activity|PTE-2|SCPchi RHEA:16865|EC:2.3.1.176|MetaCyc:2.3.1.176-RXN molecular_function owl:Class GO:0106296 biolink:NamedThing D-series resolvin biosynthetic process The chemical reactions and pathways resulting in the formation of resolvin family D-series, hydroxy fatty acids derived from docosahexaenoic acid. tmpzr1t_l9r_go_relaxed.owl hjd 2020-08-25T13:48:32Z biological_process owl:Class GO:0051371 biolink:NamedThing muscle alpha-actinin binding Binding to muscle isoforms of actinin. Muscle alpha-actinin isoforms are found in skeletal and cardiac muscle and are localized to the Z-disc. tmpzr1t_l9r_go_relaxed.owl alpha-actinin 2 binding|alpha-actinin 3 binding molecular_function owl:Class GO:0071713 biolink:NamedThing para-aminobenzoyl-glutamate hydrolase activity Catalysis of the reaction: para-aminobenzoyl-glutamate + H2O = para-aminobenzoate + L-glutamate. tmpzr1t_l9r_go_relaxed.owl mah 2010-03-10T01:25:31Z molecular_function owl:Class GO:0034891 biolink:NamedThing endosulfan diol dehydrogenase activity Catalysis of the reaction: endosulfan diol = endosulfan hydroxyether + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1388 molecular_function owl:Class GO:0090541 biolink:NamedThing MIT domain binding Binding to a MIT protein domain. The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking. tmpzr1t_l9r_go_relaxed.owl tb 2013-02-14T17:11:29Z molecular_function owl:Class GO:1990957 biolink:NamedThing NPHP complex A protein complex that is located at the ciliary transition zone and consists of the NPHP4 and NPHP1 proteins. It acts as an organiser of the transition zone inner structure, specifically the Y-shaped links, in conjunction with the MKS complex. It is involved in ciliary protein trafficking and is required for correct functioning of the WNT and Hippo signaling pathways. tmpzr1t_l9r_go_relaxed.owl NPHP module Although there is some evidence, it's still unclear if the MKS and NPHP complexes are constituent parts of the ciliary Y-shaped links or are simply responsible for aligning and attaching the Y-shaped links to the cilium membrane and axoneme. pr 2016-06-06T10:59:45Z cellular_component owl:Class GO:0047218 biolink:NamedThing hydroxycinnamate 4-beta-glucosyltransferase activity Catalysis of the reaction: 4-coumarate + UDP-D-glucose = 4-O-beta-D-glucosyl-4-hydroxycinnamate + UDP. tmpzr1t_l9r_go_relaxed.owl UDPglucose:trans-4-hydroxycinnamate 4-O-beta-D-glucosyltransferase activity|uridine diphosphoglucose-hydroxycinnamate glucosyltransferase activity|UDP-glucose-hydroxycinnamate glucosyltransferase activity|UDP-glucose:trans-4-hydroxycinnamate 4-O-beta-D-glucosyltransferase activity|hydroxycinnamoyl glucosyltransferase activity EC:2.4.1.126|RHEA:21636|MetaCyc:2.4.1.126-RXN molecular_function owl:Class GO:0106110 biolink:NamedThing vomitoxin biosynthetic process The chemical reactions and pathways resulting in the formation of type B trichothecene vomitoxin, a poisonous substance produced by some species of fungi and predominantly occurs in grains such as wheat, barley and oats. tmpzr1t_l9r_go_relaxed.owl DON biosynthetic process|vomitoxin anabolism|vomitoxin biosynthesis|vomitoxin synthesis|vomitoxin formation|deoxynivalenol biosynthetic process hjd 2018-04-16T19:06:06Z biological_process owl:Class GO:0034844 biolink:NamedThing naphthyl-2-methyl-succinate CoA-transferase activity Catalysis of the reaction: naphthyl-2-methyl-succinate + succinyl-CoA = naphthyl-2-methyl-succinyl-CoA + succinate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1256 molecular_function owl:Class GO:0018836 biolink:NamedThing alkylmercury lyase activity Catalysis of the reaction: R-Hg+ + H+ = R-H + Hg2+. tmpzr1t_l9r_go_relaxed.owl alkylmercury mercuric-lyase (alkane-forming)|organomercurial lyase activity|alkylmercury mercuric-lyase activity|organomercury lyase activity MetaCyc:ALKYLMERCURY-LYASE-RXN|EC:4.99.1.2|RHEA:18777|UM-BBD_enzymeID:e0055 molecular_function owl:Class GO:0003853 biolink:NamedThing 2-methylacyl-CoA dehydrogenase activity Catalysis of the reaction: 2-methylbutanoyl-CoA + acceptor = 2-methylbut-2-enoyl-CoA + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl 2-methylbutanoyl-CoA:(acceptor) oxidoreductase activity|2-methylbutanoyl-CoA:acceptor oxidoreductase activity|2-methyl branched chain acyl-CoA dehydrogenase activity|branched-chain acyl-CoA dehydrogenase activity RHEA:13261|EC:1.3.99.12|MetaCyc:2-METHYLACYL-COA-DEHYDROGENASE-RXN molecular_function owl:Class GO:0018636 biolink:NamedThing phenanthrene 9,10-monooxygenase activity Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-9,10-oxide. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_reactionID:r0495 molecular_function owl:Class GO:0004394 biolink:NamedThing heparan sulfate 2-O-sulfotransferase activity Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + heparan sulfate = adenosine 3',5'-bisphosphate + heparan sulfate 2-O-sulfate; results in 2-O-sulfation of iduronic acid residues in heparan sulfate. tmpzr1t_l9r_go_relaxed.owl heparan-sulfate 2-O-sulphotransferase activity|heparin 2-sulfotransferase activity|heparin-sulphate 2-sulphotransferase activity EC:2.8.2.-|Reactome:R-HSA-2076508 molecular_function owl:Class GO:0071208 biolink:NamedThing histone pre-mRNA DCP binding Binding to the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing. tmpzr1t_l9r_go_relaxed.owl mah 2009-11-25T01:41:35Z molecular_function owl:Class GO:0061693 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity Catalysis of the reaction: ATP + methylphosphonate = alpha-D-ribose 1-methylphosphonate 5-triphosphate + adenine. tmpzr1t_l9r_go_relaxed.owl EC:2.7.8.37|RHEA:34679|MetaCyc:RXN0-6732 dph 2015-05-06T10:04:04Z molecular_function owl:Class GO:0016532 biolink:NamedThing superoxide dismutase copper chaperone activity A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase, to activate superoxide dismutase activity. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'superoxide dismutase activity ; GO:0004784'. molecular_function owl:Class GO:0008255 biolink:NamedThing ecdysis-triggering hormone activity The action characteristic of ecdysis-triggering hormone, a peptide hormone that, upon receptor binding, initiates pre-ecdysis and ecdysis (i.e. cuticle shedding) through direct action on the central nervous system. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004491 biolink:NamedThing methylmalonate-semialdehyde dehydrogenase (acylating) activity Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl MSDH activity|2-methyl-3-oxopropanoate:NAD+ 3-oxidoreductase (CoA-propanoylating)|MMSA dehydrogenase activity RHEA:20804|Reactome:R-HSA-70893|EC:1.2.1.27|MetaCyc:1.2.1.27-RXN molecular_function owl:Class GO:0102967 biolink:NamedThing 10-hydroxygeraniol oxidoreductase activity Catalysis of the reaction: (6E)-8-hydroxygeraniol + NADP <=> (6E)-8-hydroxygeranial + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9367|RHEA:32607 molecular_function owl:Class GO:0016719 biolink:NamedThing carotene 7,8-desaturase activity Catalysis of the reaction: neurosporene + donor-H2 + O2 = lycopene + acceptor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl zeta-carotene desaturase activity|carotene,hydrogen-donor:oxygen oxidoreductase activity EC:1.3.5.6|MetaCyc:1.14.99.30-RXN|RHEA:15701 molecular_function owl:Class GO:0050045 biolink:NamedThing laminaribiose phosphorylase activity Catalysis of the reaction: 3-beta-D-glucosyl-D-glucose + phosphate = D-glucose + alpha-D-glucose 1-phosphate. tmpzr1t_l9r_go_relaxed.owl 3-beta-D-glucosyl-D-glucose:phosphate alpha-D-glucosyltransferase activity MetaCyc:LAMINARIBIOSE-PHOSPHORYLASE-RXN|EC:2.4.1.31|RHEA:16617 molecular_function owl:Class GO:0047815 biolink:NamedThing D-arabinonolactonase activity Catalysis of the reaction: D-arabinono-1,4-lactone + H(2)O = D-arabinonate + H(+). tmpzr1t_l9r_go_relaxed.owl D-arabinono-1,4-lactone lactonohydrolase activity MetaCyc:D-ARABINONOLACTONASE-RXN|EC:3.1.1.30|RHEA:23108|KEGG_REACTION:R02714 molecular_function owl:Class GO:0097122 biolink:NamedThing cyclin A2-CDK1 complex A protein complex consisting of cyclin A2 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-01T01:42:24Z cellular_component owl:Class GO:0000236 biolink:NamedThing mitotic prometaphase The cell cycle phase in higher eukaryotes which follows mitotic prophase and during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. Kinetochores mature on each centromere and attach to some of the spindle microtubules. Kinetochore microtubules begin the process of aligning chromosomes in one plane halfway between the poles. tmpzr1t_l9r_go_relaxed.owl Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during). biological_process owl:Class GO:0021926 biolink:NamedThing Golgi cell precursor proliferation The multiplication or reproduction of neuroblasts that will give rise to Golgi cells. A Golgi cell is an inhibitory GABAergic interneuron found in the cerebellar cortex. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018825 biolink:NamedThing triethanolamine lyase activity Catalysis of the reaction: triethanolamine = diethanolamine + acetaldehyde. tmpzr1t_l9r_go_relaxed.owl UM-BBD_enzymeID:e0421 molecular_function owl:Class GO:0097431 biolink:NamedThing mitotic spindle pole Either of the ends of a mitotic spindle, a spindle that forms as part of mitosis, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-20T09:03:16Z cellular_component owl:Class GO:0044398 biolink:NamedThing envenomation resulting in induction of edema in other organism A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the swelling of soft tissues of the bitten organism as a result of excess water accumulation. tmpzr1t_l9r_go_relaxed.owl envenomation resulting in induction of oedema in other organism jl 2011-12-21T03:57:27Z biological_process owl:Class GO:1990400 biolink:NamedThing mitochondrial ribosomal large subunit rRNA binding Binding to a mitochondrial large ribosomal subunit RNA (LSU rRNA). tmpzr1t_l9r_go_relaxed.owl 21S rRNA binding|mitochondrial LSU rRNA binding In S. cerevisiae, this is the mitochondrial 21S rRNA mcc 2014-06-23T16:47:09Z molecular_function owl:Class GO:0102668 biolink:NamedThing liquiritigenin,NADPH:oxygen oxidoreductase activity Catalysis of the reaction: liquiritigenin + NADPH + O2 + H+ <=> 2,4',7-trihydroxyisoflavanone + NADP(3-) + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:31723|MetaCyc:RXN-3283|EC:1.14.14.87 molecular_function owl:Class GO:0019232 biolink:NamedThing perception of rate of movement The series of events by which an organism senses the speed and direction of movement of the body and its parts. tmpzr1t_l9r_go_relaxed.owl kinesthesia biological_process owl:Class GO:0060020 biolink:NamedThing Bergmann glial cell differentiation The process in which neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990577 biolink:NamedThing C-terminal protein demethylation The removal of a methyl group from the C-terminal amino acid of a protein. tmpzr1t_l9r_go_relaxed.owl mcc 2014-12-08T20:55:17Z biological_process owl:Class GO:0070260 biolink:NamedThing 5'-tyrosyl-DNA phosphodiesterase activity Catalysis of the hydrolysis of 5'-phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between DNA topoisomerase II and DNA. tmpzr1t_l9r_go_relaxed.owl See also the molecular function term 'DNA topoisomerase type I activity ; GO:0003917'. molecular_function owl:Class GO:0019726 biolink:NamedThing mevaldate reductase (NADPH) activity Catalysis of the reaction: (R)-mevalonate + NADP(+) = H(+) + mevaldate + NADPH. tmpzr1t_l9r_go_relaxed.owl mevaldate (reduced nicotinamide adenine dinucleotide phosphate) reductase|(R)-mevalonate:NADP+ oxidoreductase EC:1.1.1.33|MetaCyc:MEVALDATE-REDUCTASE-NADPH-RXN|RHEA:20193|KEGG_REACTION:R02247 molecular_function owl:Class GO:0008157 biolink:NamedThing protein phosphatase 1 binding Binding to a protein phosphatase 1. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018586 biolink:NamedThing mono-butyltin dioxygenase activity Catalysis of the reaction: butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyltin. tmpzr1t_l9r_go_relaxed.owl MBT dioxygenase activity UM-BBD_reactionID:r0647 molecular_function owl:Class GO:0003347 biolink:NamedThing epicardial cell to mesenchymal cell transition A transition where an epicardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. The epicardium is a part of the pericardium. tmpzr1t_l9r_go_relaxed.owl dph 2009-12-01T11:05:39Z biological_process owl:Class GO:0033000 biolink:NamedThing Fc-gamma receptor I complex A protein complex composed of an Fc-gamma RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without additional signaling components. The complex functions primarily as an activating receptor for IgG. tmpzr1t_l9r_go_relaxed.owl FcgRI complex|IgG receptor complex|immunoglobulin G receptor complex cellular_component owl:Class GO:0032039 biolink:NamedThing integrator complex A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15979 cellular_component owl:Class GO:0018551 biolink:NamedThing hydrogensulfite reductase activity Catalysis of the reaction: trithionate + acceptor + 2 H2O + OH- = 3 HSO3- + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl trithionate:acceptor oxidoreductase activity|bisulfite reductase activity|dissimilatory sulfite reductase activity|desulfoviridin activity|dissimilatory-type sulfite reductase activity|hydrogensulphite reductase activity|trithionate:(acceptor) oxidoreductase activity|desulfofuscidin activity|desulforubidin activity UM-BBD_reactionID:r0627|MetaCyc:HYDROGENSULFITE-REDUCTASE-RXN|EC:1.8.99.3|RHEA:13209 molecular_function owl:Class GO:0047922 biolink:NamedThing gentisate 1,2-dioxygenase activity Catalysis of the reaction: 2,5-dihydroxybenzoate + O(2) = 3-maleylpyruvate + H(+). tmpzr1t_l9r_go_relaxed.owl gentisate oxygenase activity|gentisic acid oxidase activity|gentisate dioxygenase activity|2,5-dihydroxybenzoate dioxygenase activity|gentisate:oxygen 1,2-oxidoreductase (decyclizing) RHEA:18237|KEGG_REACTION:R02656|EC:1.13.11.4|MetaCyc:GENTISATE-12-DIOXYGENASE-RXN molecular_function owl:Class GO:0018694 biolink:NamedThing p-cymene methyl hydroxylase activity Catalysis of the reaction: p-cymene + NADH + O2 = NAD+ + OH- + p-cumic alcohol. tmpzr1t_l9r_go_relaxed.owl EC:1.14.15.25|UM-BBD_reactionID:r0392|MetaCyc:RXN-661|RHEA:51604 molecular_function owl:Class GO:0047384 biolink:NamedThing [hydroxymethylglutaryl-CoA reductase (NADPH)]-phosphatase activity Catalysis of the reaction: H2O + [hydroxymethylglutaryl-CoA reductase (NADPH)] phosphate = phosphate + [hydroxymethylglutaryl-CoA reductase (NADPH)]. tmpzr1t_l9r_go_relaxed.owl hydroxymethylglutaryl-CoA reductase (NADPH)-phosphatase activity|hydroxymethylglutaryl-CoA reductase (NADPH)-phosphate phosphohydrolase activity|reductase phosphatase activity EC:3.1.3.47|MetaCyc:3.1.3.47-RXN molecular_function owl:Class GO:0046773 biolink:NamedThing suppression by virus of host translation termination Any viral process that stops, prevents, or reduces the frequency, rate or extent of translational termination of a host mRNA. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host cell protein biosynthetic process shutoff|negative regulation by virus of host cell protein biosynthesis shutoff|viral inhibition of termination of host cell protein biosynthetic process|viral inhibition of host cell protein biosynthesis shutoff|viral suppression of termination by host of host cell protein biosynthetic process|viral suppression of termination by host of host cell protein biosynthesis|viral inhibition of termination of host cell protein biosynthesis|viral inhibition of host cell protein biosynthetic process shutoff|suppression by virus of host termination of protein biosynthetic process biological_process owl:Class GO:0000804 biolink:NamedThing W chromosome The sex chromosome present in females of species in which the female is the heterogametic sex; generally, the sex chromosome that pairs with the Z chromosome in the heterogametic sex. The W chromosome is absent from the cells of males and present in one copy in the somatic cells of females. tmpzr1t_l9r_go_relaxed.owl Wikipedia:ZW_sex-determination_system cellular_component owl:Class GO:0090415 biolink:NamedThing 7-hydroxymethyl chlorophyll a reductase activity Catalysis of the reaction: 7-hydroxymethyl chlorophyll a + 2 reduced ferredoxin + 2 H+ chlorophyll a + 2 oxidized ferredoxin + H2O. tmpzr1t_l9r_go_relaxed.owl tb 2011-10-03T12:08:27Z molecular_function owl:Class GO:0019546 biolink:NamedThing arginine deiminase pathway The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase. tmpzr1t_l9r_go_relaxed.owl MetaCyc:ARGDEGRAD-PWY biological_process owl:Class GO:0003920 biolink:NamedThing GMP reductase activity Catalysis of the reaction: IMP + NADP(+) + NH(4)(+) = GMP + 2 H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl NADPH:guanosine-5'-phosphate oxidoreductase (deaminating) activity|inosine-5'-phosphate:NADP+ oxidoreductase (aminating)|guanosine 5'-monophosphate oxidoreductase activity|guanosine monophosphate reductase activity|NADPH:GMP oxidoreductase (deaminating) activity|guanosine 5'-monophosphate reductase activity|NADPH2:guanosine-5'-phosphate oxidoreductase (deaminating)|guanosine 5'-phosphate reductase activity|guanylate reductase activity RHEA:17185|Reactome:R-HSA-514604|MetaCyc:GMP-REDUCT-RXN|EC:1.7.1.7|KEGG_REACTION:R01134 Note that this function was formerly EC:1.6.6.8. molecular_function owl:Class GO:0018738 biolink:NamedThing S-formylglutathione hydrolase activity Catalysis of the reaction: S-formylglutathione + H(2)O = formate + glutathione + H(+). tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0241|MetaCyc:S-FORMYLGLUTATHIONE-HYDROLASE-RXN|Reactome:R-HSA-5693724|KEGG_REACTION:R00527|RHEA:14961|EC:3.1.2.12 molecular_function owl:Class GO:0075070 biolink:NamedThing adhesion of symbiont hyphopodium to host The attachment of a hyphopodium of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adhesion of symbiont hyphopodium to host during symbiotic interaction Note that this term should not be used to annotate gene products of the host. It should only be used to annotate those gene products from the symbiont involved in this process. biological_process owl:Class GO:0075505 biolink:NamedThing entry of intact viral capsid into host nucleus through nuclear pore complex Viral penetration into the host nucleus where a viral capsid passes intact through the host nuclear pore complex (NPC). tmpzr1t_l9r_go_relaxed.owl This mechanism is used by viruses with capsids small enough to cross the nuclear pore complex, such as the single-stranded (ss) DNA viruses Parvoviridae, Circoviridae and Geminiviridae. jl 2011-07-26T04:35:03Z biological_process owl:Class GO:0030151 biolink:NamedThing molybdenum ion binding Binding to a molybdenum ion (Mo). tmpzr1t_l9r_go_relaxed.owl molybdenum binding|Mo ion binding molecular_function owl:Class GO:0032422 biolink:NamedThing purine-rich negative regulatory element binding Binding to a 30-bp purine-rich negative regulatory element; the best characterized such element is found in the first intronic region of the rat cardiac alpha-myosin heavy chain gene, and contains two palindromic high-affinity Ets-binding sites (CTTCCCTGGAAG). The presence of this element restricts expression of the gene containing it to cardiac myocytes. tmpzr1t_l9r_go_relaxed.owl PNR element binding molecular_function owl:Class GO:0032458 biolink:NamedThing slow endocytic recycling The directed movement of membrane-bounded vesicles from deep (non-peripheral) compartments endocytic compartments back to the plasma membrane where they are recycled for further rounds of transport. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051337 biolink:NamedThing amitosis Nuclear division that occurs by simple constriction of the nucleus without chromosome condensation or spindle formation. tmpzr1t_l9r_go_relaxed.owl Remak nuclear division|direct nuclear division biological_process owl:Class GO:2001094 biolink:NamedThing xylotriose transport The directed movement of a xylotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl jl 2011-09-21T02:03:26Z biological_process owl:Class GO:0050533 biolink:NamedThing 5-phytase activity Catalysis of the reaction: H2O + myo-inositol hexakisphosphate = phosphate + 1L-myo-inositol 1,2,3,4,6-pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl myo-inositol-hexakisphosphate 5-phosphohydrolase activity MetaCyc:3.1.3.72-RXN|EC:3.1.3.72|RHEA:13001 molecular_function owl:Class GO:0005944 biolink:NamedThing phosphatidylinositol 3-kinase complex, class IB A class I phosphatidylinositol 3-kinase complex that possesses 1-phosphatidylinositol-4-phosphate 3-kinase activity; comprises a catalytic class IB phosphoinositide 3-kinase (PI3K) subunit and an associated regulatory subunit that is larger than, and unrelated to, the p85 proteins present in class IA complexes. Class IB PI3Ks are stimulated by G-proteins and do not interact with the SH2-domain containing adaptors that bind to Class IA PI3Ks. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 3-kinase complex, class IB|1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex|1-phosphatidylinositol-4-phosphate kinase, class IB complex|class IB PI3K complex GO:0035031 cellular_component owl:Class GO:0050355 biolink:NamedThing triphosphatase activity Catalysis of the reaction: H(2)O + triphosphate = diphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl triphosphate phosphohydrolase activity|inorganic triphosphatase activity|tripolyphosphatase activity RHEA:14157|MetaCyc:TRIPHOSPHATASE-RXN|KEGG_REACTION:R00138|EC:3.6.1.25 molecular_function owl:Class GO:0070994 biolink:NamedThing detection of oxidative stress The series of events in which a stimulus indicating oxidative stress is received and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl mah 2009-10-30T02:54:35Z biological_process owl:Class GO:0102790 biolink:NamedThing cyanidin 5,3-O-glycosyltransferase activity Catalysis of the reaction: cyanidin 5-O-beta-D-glucoside + UDP-alpha-D-glucose = cyanin betaine + UDP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8006 molecular_function owl:Class GO:0004513 biolink:NamedThing neolactotetraosylceramide alpha-2,3-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide = CMP + alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-D-glucosylceramide. tmpzr1t_l9r_go_relaxed.owl cytidine monophosphoacetylneuraminate-neolactotetraosylceramide sialyltransferase activity|sialyltransferase 3|SAT-3|CMP-N-acetylneuraminate:neolactotetraosylceramide alpha-2,3-sialyltransferase activity RHEA:18913|EC:2.4.99.10|MetaCyc:2.4.99.10-RXN molecular_function owl:Class GO:0004066 biolink:NamedThing asparagine synthase (glutamine-hydrolyzing) activity Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate. tmpzr1t_l9r_go_relaxed.owl asparagine synthetase B activity|glutamine-dependent asparagine synthetase activity|asparagine synthase (glutamine-hydrolysing)|AS|asparagine synthetase (glutamine-hydrolyzing) activity|AS-B activity|asparagine synthetase (glutamine-hydrolysing)|L-aspartate:L-glutamine amido-ligase (AMP-forming) EC:6.3.5.4|Reactome:R-HSA-70599|MetaCyc:ASNSYNB-RXN|RHEA:12228 molecular_function owl:Class GO:0009849 biolink:NamedThing tryptophan-independent indoleacetic acid biosynthetic process The chemical reactions and pathways resulting in the formation of indoleacetic acid, independent of tryptophan. tmpzr1t_l9r_go_relaxed.owl indoleacetic acid biosynthetic process, tryptophan-independent|tryptophan-independent indoleacetic acid formation|tryptophan-independent indoleacetic acid biosynthesis|tryptophan-independent indoleacetic acid anabolism|tryptophan-independent IAA biosynthetic process|tryptophan-independent indoleacetic acid synthesis|indoleacetic acid biosynthesis, tryptophan-independent MetaCyc:PWY-581 biological_process owl:Class GO:0103093 biolink:NamedThing methylthioalkylmalate dehydrogenase activity Catalysis of the reaction: 3-(7'-methylthio)heptylmalate <=> H+ + 2-oxo-10-methylthiodecanoate + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4178 molecular_function owl:Class GO:0015608 biolink:NamedThing carbohydrate-importing ABC transporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + carbohydrate(out) -> ADP + phosphate + carbohydrate(in). tmpzr1t_l9r_go_relaxed.owl sugar transporter|carbohydrate uptake transporter activity|carbohydrate-importing ATPase activity https://github.com/geneontology/go-ontology/issues/17289 TC:3.A.1.1.1 molecular_function owl:Class GO:0034541 biolink:NamedThing dimethylarsinite methyltransferase activity Catalysis of the reaction: dimethylarsenous acid + R2S-CH3 = trimethylarsine oxide + R2SH. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0806 molecular_function owl:Class GO:0050235 biolink:NamedThing pyridoxal 4-dehydrogenase activity Catalysis of the reaction: NAD(+) + pyridoxal = 4-pyridoxolactone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl pyridoxal dehydrogenase activity|pyridoxal:NAD+ 4-oxidoreductase activity EC:1.1.1.107|MetaCyc:PYRIDOXAL-4-DEHYDROGENASE-RXN|RHEA:21336|KEGG_REACTION:R01707 molecular_function owl:Class GO:0102667 biolink:NamedThing indole-3-acetyl-beta-1-D-glucose hydrolase activity Catalysis of the reaction: 1-O-(indol-3-ylacetyl)-beta-D-glucose + H2O <=> H+ + indole-3-acetate + beta-D-glucose. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-3165 molecular_function owl:Class GO:0071532 biolink:NamedThing ankyrin repeat binding Binding to an ankyrin repeat of a protein. Ankyrin repeats are tandemly repeated modules of about 33 amino acids; each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90-degree angle, and repeats stack to form an L-shaped structure. tmpzr1t_l9r_go_relaxed.owl ANK repeat binding mah 2010-01-08T02:21:02Z molecular_function owl:Class GO:0030938 biolink:NamedThing collagen type XVIII trimer A collagen homotrimer of alpha1(XVIII) chains. tmpzr1t_l9r_go_relaxed.owl cellular_component owl:Class GO:0110036 biolink:NamedThing C2 domain binding Binding to the C2 domain of a protein, a protein structural domain involved in targeting proteins to cell membranes. tmpzr1t_l9r_go_relaxed.owl kmv 2017-07-20T20:45:56Z molecular_function owl:Class GO:1901746 biolink:NamedThing prephenate(2-) catabolic process The chemical reactions and pathways resulting in the breakdown of prephenate(2-). tmpzr1t_l9r_go_relaxed.owl prephenate(2-) degradation|prephenate catabolism|prephenate(2-) breakdown|prephenate breakdown|prephenate(2-) catabolism|prephenate degradation yaf 2013-01-14T10:13:53Z biological_process owl:Class GO:0032132 biolink:NamedThing O6-alkylguanine-DNA binding Binding to an O6-alkylguanine adduct in DNA. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0008111 biolink:NamedThing alpha-methylacyl-CoA racemase activity Catalysis of the reaction: (2S)-2-methylacyl-CoA = (2R)-2-methylacyl-CoA. tmpzr1t_l9r_go_relaxed.owl 2-methylacyl-CoA 2-epimerase activity Reactome:R-HSA-192056|EC:5.1.99.4|MetaCyc:5.1.99.4-RXN|RHEA:12657|Reactome:R-HSA-193736|Reactome:R-HSA-193452|Reactome:R-HSA-389897|Reactome:R-HSA-193763 molecular_function owl:Class GO:1990390 biolink:NamedThing protein K33-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 33 of the ubiquitin monomers, is added to a protein. tmpzr1t_l9r_go_relaxed.owl sp 2014-06-03T12:22:05Z biological_process owl:Class GO:0001051 biolink:NamedThing plastid single-subunit type RNA polymerase binding Binding to a single subunit plastid RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. tmpzr1t_l9r_go_relaxed.owl krc 2010-09-23T02:42:57Z molecular_function owl:Class GO:0017130 biolink:NamedThing poly(C) RNA binding Binding to a sequence of cytosine residues in an RNA molecule. tmpzr1t_l9r_go_relaxed.owl poly(rC) binding|poly(C) binding molecular_function owl:Class GO:0062050 biolink:NamedThing GPI-mannose ethanolamine phosphate phosphodiesterase activity A phosphoric diester hydrolase activity that removes the ethanolamine phosphate from mannose 2 of a GPI anchor. tmpzr1t_l9r_go_relaxed.owl dph 2018-06-01T18:26:54Z molecular_function owl:Class GO:0009877 biolink:NamedThing nodulation The formation of nitrogen-fixing root nodules on plant roots. tmpzr1t_l9r_go_relaxed.owl nodule formation|nodule development|nodule morphogenesis https://github.com/geneontology/go-ontology/issues/20305 GO:0009878 biological_process owl:Class GO:0102009 biolink:NamedThing proline dipeptidase activity Catalysis of the reaction: H2O + a dipeptide with proline at the C-terminal <=> L-proline + a standard alpha amino acid. tmpzr1t_l9r_go_relaxed.owl EC:3.4.13.9|MetaCyc:3.4.13.9-RXN molecular_function owl:Class GO:0070277 biolink:NamedThing iodide oxidation The chemical reactions and pathways by which iodide is converted to diiodine, with the concomitant loss of electrons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0061694 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase complex A catalytic protein complex that is capable of alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity. tmpzr1t_l9r_go_relaxed.owl An example of this complex is PhnI (P16687) in Escherichia coli. dph 2015-05-06T10:12:02Z cellular_component owl:Class GO:0031847 biolink:NamedThing type 1 neurotensin receptor binding Binding to a type 1 neurotensin receptor. tmpzr1t_l9r_go_relaxed.owl type 1 neurotensin receptor ligand molecular_function owl:Class GO:0051764 biolink:NamedThing actin crosslink formation The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes. tmpzr1t_l9r_go_relaxed.owl actin bundling|actin crosslinking|formation of actin crosslink|bridging actin filaments See also the molecular function term 'protein binding, bridging ; GO:0030674'. biological_process owl:Class GO:0071679 biolink:NamedThing commissural neuron axon guidance The process in which the migration of an axon growth cone of a commissural neuron is directed to its target in the brain in response to a combination of attractive and repulsive cues. tmpzr1t_l9r_go_relaxed.owl commissural neuron axon pathfinding mah 2010-02-17T02:21:36Z biological_process owl:Class GO:0042609 biolink:NamedThing CD4 receptor binding Binding to a CD4, a receptor found on the surface of T cells, monocytes and macrophages. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0033738 biolink:NamedThing methylenetetrahydrofolate reductase (ferredoxin) activity Catalysis of the reaction: 5-methyltetrahydrofolate + oxidized ferredoxin = 5,10-methylenetetrahydrofolate + reduced ferredoxin. tmpzr1t_l9r_go_relaxed.owl 5-methyltetrahydrofolate:ferredoxin oxidoreductase activity|5,10-methylenetetrahydrofolate reductase activity RHEA:14229|MetaCyc:RXN-5061|EC:1.5.7.1 molecular_function owl:Class GO:0008871 biolink:NamedThing aminoglycoside 2''-nucleotidyltransferase activity Catalysis of the reaction: nucleoside triphosphate + aminoglycoside = diphosphate + 2''-nucleotidylaminoglycoside. tmpzr1t_l9r_go_relaxed.owl 2''-aminoglycoside nucleotidyltransferase activity|gentamicin 2''-nucleotidyltransferase activity|gentamicin 2''- adenylyltransferase activity|NTP:gentamicin 2''-nucleotidyltransferase activity|gentamycin 2''-nucleotidyltransferase activity MetaCyc:2.7.7.46-RXN|EC:2.7.7.46 molecular_function owl:Class GO:0047467 biolink:NamedThing 4-hydroxyphenylacetaldehyde-oxime isomerase activity Catalysis of the reaction: (E)-4-hydroxyphenylacetaldehyde oxime = (Z)-4-hydroxyphenylacetaldehyde oxime. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019716 biolink:NamedThing N-terminal peptidyl-alanine monomethylation The monomethylation of the N-terminal alanine of proteins to form the derivative peptidyl-N-methyl-L-alanine. tmpzr1t_l9r_go_relaxed.owl RESID:AA0061 biological_process owl:Class GO:0052578 biolink:NamedThing alpha-farnesene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,E)-alpha-farnesene + diphosphate. tmpzr1t_l9r_go_relaxed.owl (E,E)-alpha-farnesene synthase activity RHEA:27421|MetaCyc:RXN-8574 ai 2010-08-09T01:39:42Z molecular_function owl:Class GO:1901571 biolink:NamedThing fatty acid derivative transport The directed movement of a fatty acid derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl pr 2012-11-04T17:13:49Z biological_process owl:Class GO:0062069 biolink:NamedThing GARP complex binding Binding to a GARP complex. tmpzr1t_l9r_go_relaxed.owl dph 2018-08-31T14:11:17Z molecular_function owl:Class GO:0050334 biolink:NamedThing thiaminase activity Catalysis of the reaction: H(2)O + thiamine = 4-amino-5-hydroxymethyl-2-methylpyrimidine + 5-(2-hydroxyethyl)-4-methylthiazole + H(+). tmpzr1t_l9r_go_relaxed.owl thiaminase II activity MetaCyc:THIAMINASE-RXN|EC:3.5.99.2|RHEA:17509|KEGG_REACTION:R02133 molecular_function owl:Class GO:0008668 biolink:NamedThing (2,3-dihydroxybenzoyl)adenylate synthase activity Catalysis of the reaction: 2,3-dihydroxybenzoate + ATP = 2,3-dihydroxybenzoyl 5'-adenylate + diphosphate. tmpzr1t_l9r_go_relaxed.owl 2,3-dihydroxybenzoate-AMP ligase activity|ATP:2,3-dihydroxybenzoate adenylyltransferase activity EC:2.7.7.58|RHEA:20229|KEGG_REACTION:R01504|MetaCyc:DHBAMPLIG-RXN molecular_function owl:Class GO:2001290 biolink:NamedThing hydroperoxide metabolic process The chemical reactions and pathways involving a hydroperoxide. tmpzr1t_l9r_go_relaxed.owl hydroperoxide metabolism pr 2012-02-09T03:35:37Z biological_process owl:Class GO:0061732 biolink:NamedThing mitochondrial acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-71397.1|Reactome:R-HSA-372342.1 dph 2015-08-24T13:44:02Z biological_process owl:Class GO:0035226 biolink:NamedThing glutamate-cysteine ligase catalytic subunit binding Binding to the catalytic subunit of glutamate-cysteine ligase. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047165 biolink:NamedThing flavonol-3-O-beta-glucoside O-malonyltransferase activity Catalysis of the reaction: flavonol 3-O-beta-D-glucoside + malonyl-CoA = malonyl-flavonol 3-O-beta-D-glucoside + CoA. tmpzr1t_l9r_go_relaxed.owl malonyl-coenzyme A:flavonol-3-O-glucoside malonyltransferase activity|MAT-3|flavonol 3-O-glucoside malonyltransferase activity|malonyl-CoA:flavonol-3-O-beta-D-glucoside 6''-O-malonyltransferase activity MetaCyc:2.3.1.116-RXN|RHEA:20085|EC:2.3.1.116 molecular_function owl:Class GO:0047829 biolink:NamedThing D-nopaline dehydrogenase activity Catalysis of the reaction: N2-(D-1,3-dicarboxypropyl)-L-arginine + NADP+ + H2O = L-arginine + 2-oxoglutarate + NADPH. tmpzr1t_l9r_go_relaxed.owl D-nopaline synthase activity|N2-(D-1,3-dicarboxypropyl)-L-arginine:NADP+ oxidoreductase (L-arginine-forming)|2-N-(D-1,3-dicarboxypropyl)-L-arginine:NADP+ oxidoreductase (L-arginine-forming)|nopaline synthase activity|NOS activity|nopaline dehydrogenase activity EC:1.5.1.19|RHEA:19637|MetaCyc:D-NOPALINE-DEHYDROGENASE-RXN molecular_function owl:Class GO:1902605 biolink:NamedThing heterotrimeric G-protein complex assembly The aggregation, arrangement and bonding together of a set of components to form a heterotrimeric G-protein complex. tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GTPase, alpha-subunit assembly|heterotrimeric G-protein GTPase, beta-subunit formation|heterotrimeric G-protein GTPase activity formation|heterotrimeric G-protein GTPase, beta-subunit assembly|heterotrimeric G-protein GTPase, gamma-subunit formation|heterotrimeric G-protein complex formation|heterotrimeric G-protein GTPase, alpha-subunit formation|heterotrimeric G-protein GTPase, gamma-subunit assembly|heterotrimeric G-protein GTPase activity assembly dph 2013-12-30T16:31:28Z biological_process owl:Class GO:0010117 biolink:NamedThing photoprotection Protection mechanism used by plants under conditions of excess energy absorption as a consequence of the light reactions of photosynthesis. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0047360 biolink:NamedThing undecaprenyl-phosphate galactose phosphotransferase activity Catalysis of the reaction: all-trans-undecaprenyl phosphate + UDP-D-galactose = alpha-D-galactosyl-diphosphoundecaprenol + UMP. tmpzr1t_l9r_go_relaxed.owl undecaprenyl phosphate galactosyl-1-phosphate transferase activity|poly(isoprenol)-phosphate galactose phosphotransferase activity|poly(isoprenyl)phosphate galactosephosphatetransferase activity|UDP-galactose:undecaprenyl-phosphate galactose phosphotransferase activity|poly(isoprenol)-phosphate galactosephosphotransferase activity MetaCyc:2.7.8.6-RXN|EC:2.7.8.6|RHEA:11652|KEGG_REACTION:R01535 molecular_function owl:Class GO:0032018 biolink:NamedThing 2-methylbutanol:NADP oxidoreductase activity Catalysis of the reaction: 2-methylbutanol + NADP+ = 2-methylbutanal + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl 2-methylbutanal reductase (NADP) activity|2-methylbutyraldehyde reductase (NADP) activity molecular_function owl:Class GO:0052788 biolink:NamedThing d-4,5 unsaturated beta-glucuronyl hydrolase activity Catalysis of the hydrolysis of the glycosidic bond in an unsaturated saccharide between the unsaturated glucuronyl residue at the nonreducing terminus and the saccharide linked to the residue. tmpzr1t_l9r_go_relaxed.owl unsaturated beta-glucuronyl hydrolase activity ai 2011-10-04T12:59:37Z molecular_function owl:Class GO:0061568 biolink:NamedThing GDP phosphorylation The process of introducing a phosphate group into GDP, guanosine diphosphate, to produce GTP. tmpzr1t_l9r_go_relaxed.owl dph 2013-08-01T12:57:12Z biological_process owl:Class GO:0031581 biolink:NamedThing hemidesmosome assembly Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050142 biolink:NamedThing nitrogenase (flavodoxin) activity Catalysis of the reaction: 6 reduced flavodoxin + 6 H+ + N2 + n ATP = 6 oxidized flavodoxin + 2 NH3 + n ADP + n phosphate. tmpzr1t_l9r_go_relaxed.owl reduced flavodoxin:dinitrogen oxidoreductase (ATP-hydrolysing) EC:1.19.6.1|MetaCyc:NITROGENASE-FLAVODOXIN-RXN|RHEA:15645 molecular_function owl:Class GO:0052580 biolink:NamedThing (+)-pulegone reductase, (-)-menthone as substrate, activity Catalysis of the reaction: (-)-menthone + NADP+ = (+)-pulegone + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl (-)-menthone:NADP+ oxidoreductase activity MetaCyc:RXN-5164|EC:1.3.1.81 ai 2010-08-09T04:33:53Z molecular_function owl:Class GO:0050622 biolink:NamedThing glycine dehydrogenase (cyanide-forming) activity Catalysis of the reaction: glycine + 2 A = HCN + CO2 + 2 AH2. tmpzr1t_l9r_go_relaxed.owl glycine:acceptor oxidoreductase (hydrogen-cyanide-forming)|hydrogen cyanide synthase activity|HCN synthase activity EC:1.4.99.5|RHEA:15821|MetaCyc:1.4.99.5-RXN molecular_function owl:Class GO:0140459 biolink:NamedThing response to Gram-positive bacterium Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a Gram-positive bacterium. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19278 pg 2020-04-30T07:33:34Z biological_process owl:Class GO:1990525 biolink:NamedThing BIR domain binding Binding to a Baculovirus Inhibitor of apoptosis protein Repeat (BIR) domain. tmpzr1t_l9r_go_relaxed.owl Baculovirus Inhibitor of apoptosis protein Repeat domain binding An example of this is the Drosophila reaper gene in PMID:21886178. jl 2014-11-04T12:36:56Z molecular_function owl:Class GO:0071905 biolink:NamedThing protein N-linked glucosylation via asparagine A process of protein N-linked glycosylation via asparagine in which glucose is added to the N4 of asparagine, forming an (S)-2-amino-4-(D-glucopyranosyl)amino-4-oxobutanoic acid residue. tmpzr1t_l9r_go_relaxed.owl protein amino acid N-linked glucosylation via asparagine RESID:AA0421 mah 2010-09-15T03:54:25Z biological_process owl:Class GO:0031804 biolink:NamedThing type 7 metabotropic glutamate receptor binding Binding to a type 7 metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl type 7 metabotropic glutamate receptor ligand molecular_function owl:Class GO:0050034 biolink:NamedThing L-rhamnose 1-dehydrogenase activity Catalysis of the reaction: L-rhamnofuranose + NAD(+) = L-rhamnono-1,4-lactone + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl L-rhamnofuranose:NAD+ 1-oxidoreductase activity MetaCyc:L-RHAMNOSE-1-DEHYDROGENASE-RXN|KEGG_REACTION:R03942|EC:1.1.1.173|RHEA:12649 molecular_function owl:Class GO:0034691 biolink:NamedThing integrin alphaE-beta7 complex An integrin complex that comprises one alphaE subunit and one beta7 subunit. tmpzr1t_l9r_go_relaxed.owl Itgae-Itgb7 complex cellular_component owl:Class GO:0010249 biolink:NamedThing auxin conjugate metabolic process The chemical reactions and pathways involving auxin conjugates, a bound form of auxin. tmpzr1t_l9r_go_relaxed.owl auxin conjugate metabolism biological_process owl:Class GO:0004617 biolink:NamedThing phosphoglycerate dehydrogenase activity Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl D- and L-HGA|SerA 3PG dehydrogenase activity|3-phosphoglycerate:NAD+ 2-oxidoreductase activity|D-3-phosphoglycerate dehydrogenase activity|3-phospho-D-glycerate:NAD+ 2-oxidoreductase activity|SerA|phosphoglycerate oxidoreductase activity|alpha-phosphoglycerate dehydrogenase activity|3-phosphoglyceric acid dehydrogenase activity|alpha-KG reductase activity|D-3-phosphoglycerate:NAD+ oxidoreductase activity|alphaKG reductase activity|3PHP reductase activity|phosphoglyceric acid dehydrogenase activity|3-phosphoglycerate dehydrogenase activity|glycerate-1,3-phosphate dehydrogenase activity|glycerate 3-phosphate dehydrogenase activity|PGDH activity MetaCyc:PGLYCDEHYDROG-RXN|RHEA:12641|EC:1.1.1.95|Reactome:R-HSA-977348 molecular_function owl:Class GO:0050084 biolink:NamedThing mannitol-1-phosphatase activity Catalysis of the reaction: D-mannitol 1-phosphate + H(2)O = D-mannitol + 2 H(+) + phosphate. tmpzr1t_l9r_go_relaxed.owl D-mannitol-1-phosphate phosphohydrolase activity|mannitol-1-phosphate phosphatase activity EC:3.1.3.22|MetaCyc:MANNITOL-1-PHOSPHATASE-RXN|RHEA:19537|KEGG_REACTION:R02167 molecular_function owl:Class GO:0034353 biolink:NamedThing RNA pyrophosphohydrolase activity Catalysis of the removal of a 5' terminal pyrophosphate from the 5'-triphosphate end of an RNA, leaving a 5'-monophosphate end. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0004487 biolink:NamedThing methylenetetrahydrofolate dehydrogenase (NAD+) activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NAD(+) = 5,10-methenyltetrahydrofolate + NADH. tmpzr1t_l9r_go_relaxed.owl 5,10-methylenetetrahydrofolate:NAD+ oxidoreductase|5,10-methylenetetrahydrofolate dehydrogenase activity Reactome:R-HSA-6801462|MetaCyc:1.5.1.15-RXN|EC:1.5.1.15|RHEA:22892|KEGG_REACTION:R01218 molecular_function owl:Class GO:0140417 biolink:NamedThing ATP-sensitive calcium-release channel activity Enables the transmembrane transfer of a calcium ion from intracellular stores by a channel that opens when a ATP has been bound by the channel complex or one of its constituent parts. tmpzr1t_l9r_go_relaxed.owl pg 2020-01-27T09:22:04Z molecular_function owl:Class GO:0034550 biolink:NamedThing dimethylarsinate reductase activity Catalysis of the reaction: dimethylarsinate + 3 H+ + 2 e- = dimethylarsinous acid + H2O. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0838|EC:1.97.1.- molecular_function owl:Class GO:0071253 biolink:NamedThing connexin binding Binding to a connexin, any of a group of related proteins that assemble to form gap junctions. tmpzr1t_l9r_go_relaxed.owl mah 2009-12-04T10:07:54Z molecular_function owl:Class GO:0048785 biolink:NamedThing hatching gland development The process whose specific outcome is the progression of the hatching gland over time, from its formation to the mature structure. The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0018795 biolink:NamedThing 2-hydroxy-2-methyl-1,3-dicarbonate decarboxylase activity Catalysis of the reaction: 2-hydroxy-2-methyl-1,3-dicarbonate + H+ = CO2 + L-lactate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0621 molecular_function owl:Class GO:0033107 biolink:NamedThing Cvt vesicle A cytosolic vesicle that is enclosed by a double membrane and is implicated in the cytoplasm to vacuole targeting pathway. These vesicles are found in the yeast S. cerevisiae, and contain vacuolar hydrolases, aminopeptidase I (Ape1p) and alpha-mannosidase (Ams1p). tmpzr1t_l9r_go_relaxed.owl cytoplasm-to-vacuole targeting vesicle|cytoplasm to vacuole targeting vesicle cellular_component owl:Class GO:0102742 biolink:NamedThing R(+)-3,4-dihydroxyphenyllactate:NADP+ oxidoreductase activity Catalysis of the reaction: H+ + 3,4-dihydroxyphenylpyruvate + NADPH <=> (2R)-3-(3,4-dihydroxyphenyl)lactate + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7632|EC:1.1.1.237 molecular_function owl:Class GO:0044387 biolink:NamedThing negative regulation of protein kinase activity by regulation of protein phosphorylation The stopping, prevention, or reduction in frequency, rate or extent of protein kinase activity as a result of regulating the phosphorylation status of that protein kinase. tmpzr1t_l9r_go_relaxed.owl jl 2011-12-13T04:49:36Z biological_process owl:Class GO:0047969 biolink:NamedThing glyoxylate oxidase activity Catalysis of the reaction: glyoxylate + H(2)O + O(2) = H(2)O(2) + H(+) + oxalate. tmpzr1t_l9r_go_relaxed.owl glyoxylate:oxygen oxidoreductase activity RHEA:14837|MetaCyc:GLYOXYLATE-OXIDASE-RXN|KEGG_REACTION:R00466|EC:1.2.3.5|Reactome:R-HSA-389862 molecular_function owl:Class GO:0036033 biolink:NamedThing mediator complex binding Binding to a mediator complex. The mediator complex is a protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. tmpzr1t_l9r_go_relaxed.owl bf 2011-10-31T05:09:12Z molecular_function owl:Class GO:1990879 biolink:NamedThing CST complex A complex formed by the association of Cdc13 (CTC1 in mammals) with Stn1 in yeast (OBFC1 in mammals) and Ten1 protein (also TEN1 in mammals) with single-stranded telomeric DNA. The CST complex plays a role in telomere protection. tmpzr1t_l9r_go_relaxed.owl Cdc13-Stn1-Ten1 complex|CTC1-OBFC1-TEN1 complex nc 2015-10-20T13:51:07Z cellular_component owl:Class GO:0006881 biolink:NamedThing extracellular sequestering of iron ion The process of binding or confining iron ions in an extracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl extracellular iron ion retention|extracellular iron ion sequestering|extracellular storage of iron ion|extracellular iron ion sequestration|extracellular iron ion storage|extracellular retention of iron ion|extracellular sequestration of iron ion biological_process owl:Class GO:0140284 biolink:NamedThing endoplasmic reticulum-endosome membrane contact site A contact site between the endoplasmic reticulum membrane and the endosome membrane. tmpzr1t_l9r_go_relaxed.owl ER-endosome membrane contact site pg 2018-10-30T10:29:28Z cellular_component owl:Class GO:0033995 biolink:NamedThing anhydrosialidase activity Catalysis of the reaction: an N-acetylneuraminate glycoside = 2,7-anhydro-alpha-N-acetylneuraminate + an alpha-sialyl group. This reaction is the elimination of alpha-sialyl groups in N-acetylneuraminic acid glycosides, releasing 2,7-anhydro-alpha-N-acetylneuraminate. tmpzr1t_l9r_go_relaxed.owl sialidase L activity|sialglycoconjugate N-acylneuraminylhydrolase (2,7-cyclizing) activity|glycoconjugate sialyl-lyase (2,7-cyclizing) activity|anhydroneuraminidase activity EC:4.2.2.15|MetaCyc:4.2.2.15-RXN molecular_function owl:Class GO:0097408 biolink:NamedThing fibrillary inclusion Cellular inclusion consisting of circular areas filled with fine slender filaments about 10 nanometers in diameter, delimited by a wall of varying complexity (either a single continuous membrane or a tubular network consisting of a fine filamentous material giving the wall a honeycomb appearance). Fibrillary inclusions are found in the cytoplasm of giant cells of Dieters in the lateral vestibular nucleus of the rat; similar structures have been described in the ventral cochlear nucleus, spinal cord, and substantia nigra. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao967812059 pr 2012-10-31T13:53:58Z cellular_component owl:Class GO:0047222 biolink:NamedThing mannotetraose 2-alpha-N-acetylglucosaminyltransferase activity Catalysis of the reaction: 1,3-alpha-D-mannosyl-1,2-alpha-D-mannosyl-1,2-alpha-D-mannosyl-D-mannose + UDP-N-acetyl-D-glucosamine = 1,3-alpha-D-mannosyl-1,2-(N-acetyl-alpha-D-glucosaminyl-alpha-D-mannosyl)-1,2-alpha-D-mannosyl-D-mannose + UDP. tmpzr1t_l9r_go_relaxed.owl alpha-N-acetylglucosaminyltransferase activity|UDP-N-acetyl-D-glucosamine:mannotetraose alpha-N-acetyl-D-glucosaminyltransferase activity|uridine diphosphoacetylglucosamine mannoside alpha1->2-alphacetylglucosaminyltransferase activity EC:2.4.1.138|MetaCyc:2.4.1.138-RXN|RHEA:13705 molecular_function owl:Class GO:0008957 biolink:NamedThing phenylacetaldehyde dehydrogenase activity Catalysis of the reaction: phenylacetaldehyde + NAD+ + H2O = phenylacetate + NADH + H+. tmpzr1t_l9r_go_relaxed.owl phenylacetaldehyde:NAD+ oxidoreductase activity UM-BBD_reactionID:r0035|EC:1.2.1.39|MetaCyc:PHENDEHYD-RXN|RHEA:21392 molecular_function owl:Class GO:0050221 biolink:NamedThing prostaglandin-E2 9-reductase activity Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha,15-trihydroxyprosta-5,13-dienoate + NADP+ = (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprosta-5,13-dienoate + NADPH. tmpzr1t_l9r_go_relaxed.owl PGE2-9-ketoreductase activity|prostaglandin E2-9-oxoreductase activity|prostaglandin-E(2) 9-oxoreductase activity|9-keto-prostaglandin E(2) reductase activity|9-ketoprostaglandin reductase activity|PGE2 9-ketoreductase activity|PGE(2) 9-oxoreductase activity|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 9-oxidoreductase activity|PGE2-9-OR|prostaglandin E 9-ketoreductase activity|prostaglandin-E2 9-oxoreductase activity|9-keto-prostaglandin E2 reductase activity|PGE(2) 9-ketoreductase activity|PGE2 9-oxoreductase activity|reductase, 15-hydroxy-9-oxoprostaglandin|PGE-9-ketoreductase activity RHEA:24508|Reactome:R-HSA-2161651|EC:1.1.1.189|MetaCyc:PROSTAGLANDIN-E2-9-REDUCTASE-RXN molecular_function owl:Class GO:0036351 biolink:NamedThing histone H2A-K13 ubiquitination The modification of histone H2A by addition of ubiquitin group at lysine 13 (H2A-K13) in metazoans, and at the equivalent residue in other organisms. Monoubiquitin is first attached to H2A-K13 and K63-linked ubiquitin chains are then extended from this monoubiquitin. tmpzr1t_l9r_go_relaxed.owl histone H2A ubiquitination (H2A-K13) bf 2012-09-19T11:48:05Z biological_process owl:Class GO:0039717 biolink:NamedThing spherule viral factory A cytoplasmic viral factory which is a 50-400nm diameter membrane invagination. Spherules can appear on several enveloped cellular components depending on the virus. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Viroplasm bf 2013-12-19T15:25:57Z cellular_component owl:Class GO:0102765 biolink:NamedThing UDP-D-apiose synthase activity Catalysis of the reaction: H+ + UDP-alpha-D-glucuronate = UDP-alpha-D-apiose + carbon dioxide. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-7770 molecular_function owl:Class GO:0072590 biolink:NamedThing N-acetyl-L-aspartate-L-glutamate ligase activity Catalysis of the reaction: ATP + N-acetyl-L-aspartate + L-glutamate = ADP + phosphate + N-acetylaspartyl-glutamate. tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-8942575 mah 2011-02-10T03:20:41Z molecular_function owl:Class GO:0106282 biolink:NamedThing isoursodeoxycholate 7-beta-dehydrogenase (NAD+) activity Catalysis of the reaction: 3beta,7beta-dihydroxy-5beta-cholan-24-oate + NAD(+) = 3beta-hydroxy-7-oxo-5beta-cholan-24-oate + H(+) + NADH. tmpzr1t_l9r_go_relaxed.owl RHEA:42024 hjd 2020-07-29T17:51:00Z molecular_function owl:Class GO:0021976 biolink:NamedThing medulla reticulospinal tract morphogenesis Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0021824 biolink:NamedThing cerebral cortex tangential migration using cell-axon interactions The movement of cerebral cortex neuronal precursors tangentially through the cortex using interaction of the migrating cells with axons of other neurons. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0097150 biolink:NamedThing neuronal stem cell population maintenance Any process in by an organism or tissue maintains a population of neuronal stem cells. tmpzr1t_l9r_go_relaxed.owl pr 2011-08-04T11:18:28Z biological_process owl:Class GO:0032447 biolink:NamedThing protein urmylation Covalent attachment of the ubiquitin-like protein URM1 to another protein. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:1990424 biolink:NamedThing protein arginine kinase activity Catalysis of the reaction: ATP + a protein arginine = ADP + protein arginine phosphate. tmpzr1t_l9r_go_relaxed.owl This reaction occurs in bacterial species e.g. Bacillus subtilis. jl 2014-07-23T13:35:56Z molecular_function owl:Class GO:0102521 biolink:NamedThing tRNA-4-demethylwyosine synthase activity Catalysis of the reaction: pyruvate + S-adenosyl-L-methionine + N1-methylguanine37 in tRNAPhe = L-methionine + 5'-deoxyadenosine + carbon dioxide + H2O + 4-demethylwyosine37 in tRNAPhe. tmpzr1t_l9r_go_relaxed.owl EC:4.1.3.44|RHEA:36347|MetaCyc:RXN-14516 molecular_function owl:Class GO:0080133 biolink:NamedThing midchain alkane hydroxylase activity Catalysis of the conversion of an alkane to a secondary alcohol. tmpzr1t_l9r_go_relaxed.owl dhl 2009-05-06T04:46:17Z molecular_function owl:Class GO:0034280 biolink:NamedThing ent-sandaracopimaradiene synthase activity Catalysis of the reaction: ent-copalyl diphosphate = ent-sandaracopimara-8(14),15-diene + diphosphate. tmpzr1t_l9r_go_relaxed.owl ent-copalyl-diphosphate diphosphate-lyase [ent-sandaracopimara-8(14),15-diene-forming] activity|ent-pimaradiene synthase activity MetaCyc:RXN-4884|RHEA:25536|KEGG_REACTION:R09120|EC:4.2.3.29 molecular_function owl:Class GO:0015752 biolink:NamedThing D-ribose transmembrane transport The process in which D-ribose is transported across a lipid bilayer, from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12. tmpzr1t_l9r_go_relaxed.owl D-ribose transport biological_process owl:Class GO:0019701 biolink:NamedThing peptidyl-arginine N5-methylation The methylation of peptidyl-arginine on the internal nitrogen-5 (N5) atom (also called delta-nitrogen) to form peptidyl-N5-methyl-L-arginine. tmpzr1t_l9r_go_relaxed.owl peptidyl-arginine delta-N-methylation RESID:AA0305 biological_process owl:Class GO:0018638 biolink:NamedThing toluene 4-monooxygenase activity Catalysis of the reaction: toluene + 1/2 O2 = 4-hydroxytoluene. tmpzr1t_l9r_go_relaxed.owl EC:1.14.13.-|UM-BBD_enzymeID:e0225 molecular_function owl:Class GO:0031385 biolink:NamedThing regulation of termination of mating projection growth Any process that modulates the frequency, rate, or extent of the end of mating projection formation by unicellular fungi. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050733 biolink:NamedThing RS domain binding Binding to an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0097241 biolink:NamedThing hematopoietic stem cell migration to bone marrow The orderly movement of a hematopoietic stem cell into the bone marrow, and its subsequent positioning within defined functional compartments in that microenvironment. A hematopoietic stem cell is a cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. tmpzr1t_l9r_go_relaxed.owl hematopoietic stem cell homing|hemopoietic stem cell migration to bone marrow|progenitor cell homing pr 2012-02-09T01:08:32Z biological_process owl:Class GO:0047447 biolink:NamedThing erythro-3-hydroxyaspartate ammonia-lyase activity Catalysis of the reaction: erythro-3-hydroxy-L-aspartate = NH3 + oxaloacetic acid. tmpzr1t_l9r_go_relaxed.owl erythro-3-hydroxy-Ls-aspartate hydro-lyase (deaminating)|erythro-3-hydroxy-Ls-aspartate ammonia-lyase (oxaloacetate-forming)|erythro-3-hydroxy-Ls-aspartate ammonia-lyase activity|erythro-3-hydroxy-L(s)-aspartate hydro-lyase (deaminating) activity|erythro-beta-hydroxyaspartate dehydratase activity|3-hydroxyaspartate dehydratase activity|erythro-3-hydroxyaspartate dehydratase activity MetaCyc:4.3.1.20-RXN|EC:4.3.1.20|RHEA:19757 molecular_function owl:Class GO:0016618 biolink:NamedThing hydroxypyruvate reductase activity Catalysis of the reaction: D-glycerate + NADP+ = hydroxypyruvate + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl beta-hydroxypyruvate reductase activity|NADH:hydroxypyruvate reductase activity|D-glycerate:NADP+ 2-oxidoreductase activity|D-glycerate dehydrogenase activity RHEA:18657|EC:1.1.1.81|MetaCyc:RXN0-300|MetaCyc:HYDROXYPYRUVATE-REDUCTASE-RXN molecular_function owl:Class GO:0102582 biolink:NamedThing cyanidin 3-O-p-coumaroylglucoside 2-O''-xylosyltransferase activity Catalysis of the reaction: cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) + UDP-alpha-D-xylose <=> cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15328 molecular_function owl:Class GO:0048540 biolink:NamedThing bursa of Fabricius development The process whose specific outcome is the progression of the bursa of Fabricius over time, from its formation to the mature structure. The bursa of Fabricius is an organ found in birds involved in B cell differentiation. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0051212 biolink:NamedThing vanadium ion binding Binding to a vanadium ion (V). tmpzr1t_l9r_go_relaxed.owl V ion binding molecular_function owl:Class GO:0045326 biolink:NamedThing protein-DNA covalent cross-linking via the 3'-end to peptidyl-tyrosine The formation of a covalent cross-link between DNA and a peptidyl-tyrosine residue by the formation of O4'-(phospho-3'-DNA)-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl DNA-protein covalent cross-linking via the 3'-end to peptidyl-tyrosine RESID:AA0323 biological_process owl:Class GO:0044314 biolink:NamedThing protein K27-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 27 of the ubiquitin monomers, is added to a protein. tmpzr1t_l9r_go_relaxed.owl protein K27-linked polyubiquitination jl 2010-06-02T11:48:08Z biological_process owl:Class GO:0047086 biolink:NamedThing ketosteroid monooxygenase activity Catalysis of the reaction: O2 + NADPH + progesterone = H2O + NADP+ + testosterone acetate. tmpzr1t_l9r_go_relaxed.owl steroid-ketone monooxygenase activity|ketosteroid,NADPH:oxygen oxidoreductase (20-hydroxylating, ester-producing/20-hydroxylating, side-chain cleaving/17-hydroxylating, lactonizing)|progesterone, NADPH2:oxygen oxidoreductase (20-hydroxylating, ester-producing)|17alpha-hydroxyprogesterone, NADPH2:oxygen oxidoreductase (20-hydroxylating, side-chain cleaving)|androstenedione, NADPH2:oxygen oxidoreductase (17-hydroxylating, lactonizing) MetaCyc:1.14.13.54-RXN|EC:1.14.13.54 molecular_function owl:Class GO:0009922 biolink:NamedThing fatty acid elongase activity Catalysis of the reaction: fatty acid (C-16 or longer) + 2-C = fatty acid (C-16 or longer + 2-C). tmpzr1t_l9r_go_relaxed.owl Reactome:R-HSA-2046094|Reactome:R-HSA-2046083|MetaCyc:ICOSANOYL-COA-SYNTHASE-RXN|Reactome:R-HSA-2046100|Reactome:R-HSA-548830|Reactome:R-HSA-2046088|Reactome:R-HSA-548815|Reactome:R-HSA-2046095|Reactome:R-HSA-548800|Reactome:R-HSA-548814|Reactome:R-HSA-2046090 molecular_function owl:Class GO:0047236 biolink:NamedThing methyl-ONN-azoxymethanol beta-D-glucosyltransferase activity Catalysis of the reaction: methylazoxymethanol + UDP-D-glucose = H+ + cycasin + UDP. tmpzr1t_l9r_go_relaxed.owl methyl-ONN-azoxymethanol glucosyltransferase activity|uridine diphosphoglucose-methylazoxymethanol glucosyltransferase activity|UDPglucose-methylazoxymethanol glucosyltransferase activity|UDP-glucose:methyl-ONN-azoxymethanol beta-D-glucosyltransferase activity|cycasin synthase activity MetaCyc:2.4.1.171-RXN|RHEA:20205|EC:2.4.1.171 molecular_function owl:Class GO:1990946 biolink:NamedThing meiosis I/meiosis II transition The cell cycle process in which a cell progresses from meiosis I to meiosis II. tmpzr1t_l9r_go_relaxed.owl vw 2016-04-21T13:01:07Z biological_process owl:Class GO:0005536 biolink:NamedThing glucose binding Binding to D- or L-enantiomers of glucose. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0019162 biolink:NamedThing pyridoxamine-oxaloacetate transaminase activity Catalysis of the reaction: oxaloacetate + pyridoxamine = L-aspartate + pyridoxal. tmpzr1t_l9r_go_relaxed.owl pyridoxamine--oxaloacetate aminotransferase activity|pyridoxamine:oxaloacetate aminotransferase activity|pyridoxamine-oxaloacetate aminotransferase activity RHEA:10844|EC:2.6.1.31|MetaCyc:PYROXALTRANSAM-RXN|KEGG_REACTION:R01713 molecular_function owl:Class GO:0030982 biolink:NamedThing adventurous gliding motility A process involved in the controlled movement of a bacterial cell powered by the rearward secretion of carbohydrate slime. tmpzr1t_l9r_go_relaxed.owl adventurous gliding movement biological_process owl:Class GO:0030338 biolink:NamedThing CMP-N-acetylneuraminate monooxygenase activity Catalysis of the reaction: CMP-N-acetylneuraminate + NADPH + H+ + O2 = CMP-N-glycoloylneuraminate + NADP+ + H2O. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminic acid hydroxylase activity|CMP-Neu5Ac hydroxylase activity|CMP-N-acetylneuraminate hydroxylase activity|CMP-N-acetylneuraminate,ferrocytochrome-b5:oxygen oxidoreductase (N-acetyl-hydroxylating)|cytidine monophosphoacetylneuraminate monooxygenase activity|cytidine-5'-monophosphate-N-acetylneuraminic acid hydroxylase activity|N-acetylneuraminic monooxygenase activity MetaCyc:1.14.13.45-RXN|RHEA:16145|EC:1.14.18.2 Note that this was EC:1.14.13.45. molecular_function owl:Class GO:0050438 biolink:NamedThing 2-ethylmalate synthase activity Catalysis of the reaction: 2-oxobutanate + acetyl-CoA + H(2)O = (R)-2-ethylmalate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:2-oxobutanoate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)|propylmalic synthase activity|propylmalate synthase activity|2-ethylmalate-3-hydroxybutanedioate synthase activity|(R)-2-ethylmalate 2-oxobutanoyl-lyase (CoA-acetylating) activity KEGG_REACTION:R00998|EC:2.3.3.6|MetaCyc:2-ETHYLMALATE-SYNTHASE-RXN|RHEA:23040 molecular_function owl:Class GO:0050202 biolink:NamedThing octopamine dehydratase activity Catalysis of the reaction: 1-(4-hydroxyphenyl)-2-aminoethanol = (4-hydroxyphenyl)acetaldehyde + NH(4)(+). tmpzr1t_l9r_go_relaxed.owl octopamine hydro-lyase (deaminating)|octopamine hydro-lyase [deaminating; (4-hydroxyphenyl)acetaldehyde-forming]|octopamine hydrolyase activity KEGG_REACTION:R03358|MetaCyc:OCTOPAMINE-DEHYDRATASE-RXN|RHEA:18173|EC:4.2.1.87 molecular_function owl:Class GO:0003879 biolink:NamedThing ATP phosphoribosyltransferase activity Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate. tmpzr1t_l9r_go_relaxed.owl 1-(5-phospho-D-ribosyl)-ATP:diphosphate phospho-alpha-D-ribosyl-transferase activity|phosphoribosyladenosine triphosphate:pyrophosphate phosphoribosyltransferase activity|phosphoribosyl-ATP diphosphorylase activity|phosphoribosyladenosine triphosphate pyrophosphorylase activity|adenosine triphosphate phosphoribosyltransferase activity|phosphoribosyl-ATP pyrophosphorylase activity|phosphoribosyl ATP:pyrophosphate phosphoribosyltransferase activity|phosphoribosyl-ATP:pyrophosphate-phosphoribosyl phosphotransferase activity|phosphoribosyl ATP synthetase activity|phosphoribosyladenosine triphosphate synthetase activity RHEA:18473|MetaCyc:ATPPHOSPHORIBOSYLTRANS-RXN|EC:2.4.2.17 molecular_function owl:Class GO:0010401 biolink:NamedThing pectic galactan metabolic process The chemical reactions and pathways involving galactan, a polymer of D-galactosyl units that can be found as a side chain of the pectin rhamnogalacturonan I. tmpzr1t_l9r_go_relaxed.owl pectic galactan metabolism biological_process owl:Class GO:0010019 biolink:NamedThing chloroplast-nucleus signaling pathway The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis. tmpzr1t_l9r_go_relaxed.owl chloroplast-nucleus signalling pathway biological_process owl:Class GO:0015039 biolink:NamedThing NADPH-adrenodoxin reductase activity Catalysis of the reaction: oxidized adrenodoxin + NADPH + H+ = reduced adrenodoxin + NADP+. tmpzr1t_l9r_go_relaxed.owl adrenodoxin-type ferredoxin reductase activity|adrenodoxin reductase activity|NADPH:adrenodoxin oxidoreductase activity EC:1.18.1.6|RHEA:42312|MetaCyc:RXN-13685 Note that this term specifically refers to the reaction proceeding in the direction shown; under physiological conditions adrenodoxin reduction by adrenodoxin reductase is coupled with electron transfer from AdR to P450, which catalyzes an irreversible monooxygenation reaction. This term should therefore be used to annotate gene products that catalyze the reduction of oxidized adrenodoxin; also consider annotating to the molecular function term 'ferredoxin-NADP+ reductase activity ; GO:0004324'. molecular_function owl:Class GO:0070383 biolink:NamedThing DNA cytosine deamination The removal of an amino group from a cytosine residue in DNA, forming a uracil residue. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0075502 biolink:NamedThing endosome membrane permeabilization involved in viral entry into host cell Induction of endosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid. Occurs after internalization of the virus through the endosomal pathway, and results in delivery of the virus contents into the host cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via clathrin-mediated endocytosis followed by endosome membrane permeabilization|viral entry into host cell via caveolae-mediated endocytosis followed by endosome membrane jl 2010-06-02T02:40:25Z GO:0075518 biological_process owl:Class GO:0102583 biolink:NamedThing cyanidin 3-O-glucoside-(2''-O-xyloside) 6''-O-acyltransferase activity Catalysis of the reaction: cyanidin 3-O-beta-D-sambubioside + 4-coumaryl-CoA <=> cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15329 molecular_function owl:Class GO:1990227 biolink:NamedThing paranodal junction maintenance The maintenance of a paranodal junction, a highly specialized cell-cell junction found in vertebrates, which forms between a neuron and a glial cell, and has structural similarity to Drosophila septate junctions. A paranodal junction flanks the node of Ranvier in myelinated nerve, electrically isolates the myelinated from unmyelinated nerve segments, and physically separates the voltage-gated sodium channels at the node from the cluster of potassium channels underneath the myelin sheath. tmpzr1t_l9r_go_relaxed.owl axoglial septate junction maintenance|paranodal septate maintenance|paranodal axoglial junction maintenance pr 2013-11-07T20:01:46Z biological_process owl:Class GO:0033709 biolink:NamedThing D-arabinitol dehydrogenase, D-ribulose forming (NADP+) activity Catalysis of the reaction: D-arabinitol + NADP+ = D-ribulose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl D-arabinitol:NADP+ dehydrogenase activity|D-arabinitol dehydrogenase 1 activity|ARD1p|NADP+-dependent D-arabinitol dehydrogenase activity KEGG_REACTION:R07144|RHEA:11868|MetaCyc:RXN-7972 molecular_function owl:Class GO:0140024 biolink:NamedThing plus-end-directed endosome transport along mitotic spindle midzone microtubule The directed movement of an endosome towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an endosome to a microtubule, and ends when the endosome reaches its final destination. tmpzr1t_l9r_go_relaxed.owl pg 2017-04-29T11:34:23Z biological_process owl:Class GO:0034778 biolink:NamedThing 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA dehydrogenase activity Catalysis of the reaction: 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA = 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1003 molecular_function owl:Class GO:0102324 biolink:NamedThing 2-hydroxy-6-oxo-nona-2,4-dienoate hydrolase activity Catalysis of the reaction: 2-hydroxy-6-oxo-nona-2,4-dienoate + H2O = butyrate + 2-oxopent-4-enoate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-13157 molecular_function owl:Class GO:0004582 biolink:NamedThing dolichyl-phosphate beta-D-mannosyltransferase activity Catalysis of the reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate. tmpzr1t_l9r_go_relaxed.owl GDPMan:DolP mannosyltransferase activity|guanosine diphosphomannose-dolichol phosphate mannosyltransferase activity|dolichyl mannosyl phosphate synthase activity|DPM synthase activity|GDPmannose-dolichylmonophosphate mannosyltransferase activity|dolichol-phosphate mannosyltransferase activity|GDP-mannose-dolichol phosphate mannosyltransferase activity|GDP-mannose:dolichyl-phosphate beta-D-mannosyltransferase activity|dolichyl-phospho-mannose synthase activity|dolichol-phosphate-mannose synthase activity|dolichol phosphate mannose synthase activity|dolichyl-phosphate mannose synthase activity|GDPmannose:dolichyl-phosphate mannosyltransferase activity|mannosylphosphodolichol synthase activity|mannosylphosphoryldolichol synthase activity|dolichyl phosphate mannosyltransferase activity|dolichol-phosphate mannose synthase activity Reactome:R-HSA-4719354|Reactome:R-HSA-4719375|Reactome:R-HSA-162721|Reactome:R-HSA-4717406|EC:2.4.1.83|MetaCyc:2.4.1.83-RXN|RHEA:21184 molecular_function owl:Class GO:0030592 biolink:NamedThing DNA ADP-ribosylation The covalent attachment of an ADP-ribosyl group to a residue in double-stranded DNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16614 biological_process owl:Class GO:0052604 biolink:NamedThing delta-tocopherol cyclase activity Catalysis of the reaction: 2-methyl-6-phytyl-1,4-benzoquinone = delta-tocopherol. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-2561|RHEA:37987|KEGG_REACTION:R07503 molecular_function owl:Class GO:1901763 biolink:NamedThing oxytetracycline biosynthetic process The chemical reactions and pathways resulting in the formation of oxytetracycline. tmpzr1t_l9r_go_relaxed.owl oxytetracycline synthesis|oxytetracycline formation|oxytetracycline anabolism|oxytetracycline biosynthesis yaf 2013-01-15T09:52:59Z biological_process owl:Class GO:0002459 biolink:NamedThing adaptive immune response based on somatic recombination of immune receptors built from leucine-rich repeat domains An immune response mediated by lymphocytes expressing specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of variable lymphocyte receptors (VLR) incorporating leucine-rich repeat (LRR) domains, and allowing for enhanced responses upon subsequent exposures to the same antigen (immunological memory). Examples of this process are found in jawless fish, including the lampreys (Petromyzontidae) and hagfishes (Myxinidae). tmpzr1t_l9r_go_relaxed.owl adaptive immune response based on somatic recombination of variable lymphocyte receptors built from leucine-rich repeat domains|adaptive immune response in jawless fish|adaptive immune response based on somatic recombination of VLR built from LRR domains biological_process owl:Class GO:0080068 biolink:NamedThing 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity Catalysis of the reaction: 5-methylthiopentyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 5-methylthiopentyl-glucosinolate + adenosine 3',5'-bisphosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXNQT-4330 dhl 2009-04-13T04:06:59Z molecular_function owl:Class GO:0030281 biolink:NamedThing structural constituent of cutaneous appendage The action of a molecule that contributes to the structural integrity of cutaneous epidermal structures such as hairs, scales, or feathers. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0018737 biolink:NamedThing 2-ketocyclohexane-1-carboxyl-CoA hydrolase activity Catalysis of the reaction: 2-ketocyclohexane-1-carboxyl-CoA + H2O = pimeloyl-CoA. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0193 molecular_function owl:Class GO:0090583 biolink:NamedThing protein-phosphocysteine-D-sorbitol-phosphotransferase system transporter activity Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + D-sorbitol(out) = protein cysteine + D-sorbitol-1-phosphate(in). tmpzr1t_l9r_go_relaxed.owl tb 2014-06-04T16:22:31Z molecular_function owl:Class GO:0004654 biolink:NamedThing polyribonucleotide nucleotidyltransferase activity Catalysis of the reaction: RNA(n+1) + phosphate <=> RNA(n) + a nucleoside diphosphate. tmpzr1t_l9r_go_relaxed.owl polynucleotide phosphorylase activity|polyribonucleotide:phosphate nucleotidyltransferase activity|polyribonucleotide phosphorylase activity|nucleoside diphosphate:polynucleotidyl transferase activity EC:2.7.7.8|RHEA:22096|MetaCyc:2.7.7.8-RXN molecular_function owl:Class GO:0102181 biolink:NamedThing 4alpha-formyl-stigmasta-7,24(241)-dien-3beta-ol-methyl oxidase activity Catalysis of the reaction: 4alpha-formyl-stigmasta-7,24(241)-dien-3beta-ol + NADH + O2 <=> 4alpha-carboxy-stigmasta-7,24(241)-dien-3beta-ol + NAD + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-11937|RHEA:59040 molecular_function owl:Class GO:0034752 biolink:NamedThing cytosolic aryl hydrocarbon receptor complex An aryl hydrocarbon receptor complex found in the cytosol, in which the ligand-binding subunit AhR is not bound to ligand; consists of AhR, two molecules of HSP90, the protein kinase c-Src, and the immunophilin XAP2/AIP. tmpzr1t_l9r_go_relaxed.owl 9S-cytosolic aryl hydrocarbon (Ah) receptor non-ligand activated complex|cytosolic AhR complex|cytosolic AHRC cellular_component owl:Class GO:0021665 biolink:NamedThing rhombomere 5 structural organization The process that contributes to creating the structural organization of rhombomere 5. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order. tmpzr1t_l9r_go_relaxed.owl rhombomere 5 structural organisation biological_process owl:Class GO:0097527 biolink:NamedThing necroptotic signaling pathway A series of molecular signals which triggers the necroptotic death of a cell. The pathway starts with reception of a signal, is characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3), and ends when the execution phase of necroptosis is triggered. tmpzr1t_l9r_go_relaxed.owl necroptotic signal transduction|necroptosis signaling|necroptosis signaling pathway|necroptotic signalling pathway Gene products that may be annotated to this term include: 1) ligands such as TNF-alpha; 2) receptors such as TNFR (though care should be taken because TNF-alpha and TNFR may also be involved in non-necroptotic processes); 3) signaling molecules such as TNFR-associated death domain (TRADD), receptor-interacting protein kinase 1 (RIP1), cellular inhibitor of apoptosis 1 (cIAP1), cIAP2, TNFR-associated factor 2 (TRAF2) and TRAF5. Within the so-called complex I, RIP1 is polyubiquitinated by cIAPs, thereby providing a docking site for the recruitment of transforming growth factor beta (TGFbeta)-activated kinase 1 (TAK1), TAK1-binding protein 2 (TAB2) and TAB3 (which together deliver a pro-survival signal by activating the transcription factor NF-kB). In some pathophysiological and experimental settings, and in particular when caspase-8 is absent or when caspases are inhibited by pharmacological agents, cylindromatosis (CYLD)-deubiquitinated RIP1 engage in physical and functional interactions with its homolog RIP3, ultimately activating the execution of necrotic cell death. (The pathway downstream of RIPK3 remains largely unknown, although ROS generation, calcium overload, and the opening of the mitochondrial permeability transition pore have been implicated (PMID:22265414)). A necroptotic signaling pathway may also be induced by alkylating DNA damage (possibly by the overactivation of poly(ADP-ribose) polymerase 1, PARP1). This is sometimes referred to as PARP-dependent cell death or parthanatos; it is still being debated if it constitutes an independent cell death modality. pr 2013-11-05T14:17:28Z biological_process owl:Class GO:1990107 biolink:NamedThing thiazole synthase activity Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + thiocarboxy-adenylate-[sulfur-carrier protein ThiS] = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS] + 2 H2O. tmpzr1t_l9r_go_relaxed.owl 1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase activity RHEA:26297 H2S can provide the sulfur in vitro. Part of the pathway for thiamine biosynthesis. pr 2013-05-28T12:36:04Z molecular_function owl:Class GO:0000744 biolink:NamedThing karyogamy involved in conjugation with mutual genetic exchange During sexual reproduction, the creation of a single nucleus from two nuclei as a result of fusing the nuclear envelopes that surround each nuclei. This takes place following the mutual exchange of one of the two nuclei produced by the mitosis that follows the second meiotic nuclear division. This occurs in ciliated protozoans such as Tetrahymena. tmpzr1t_l9r_go_relaxed.owl karyogamy involved in conjugation without cellular fusion https://github.com/geneontology/go-ontology/issues/16248 biological_process owl:Class GO:0042071 biolink:NamedThing leucokinin receptor activity Combining with a leucokinin, any of several octapeptide hormones found in insects, and transmitting the signal to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102858 biolink:NamedThing 1-18:2-2-18:3-phosphatidylcholine desaturase activity Catalysis of the reaction: 1-18:2-2-18:3-phosphatidylcholine + O2 + a reduced electron acceptor <=> 1-18:3-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8325 molecular_function owl:Class GO:0039617 biolink:NamedThing T=3 icosahedral viral capsid The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres. tmpzr1t_l9r_go_relaxed.owl VZ:806 bf 2012-07-18T02:07:40Z cellular_component owl:Class GO:0032783 biolink:NamedThing super elongation complex A transcription elongation factor complex that increases the overall rate of RNA polymerase II transcription elongation by suppressing transient polymerase pausing. At minimum, the complex contains a transcription factor of the ELL family, an EAF protein, and an AFF family protein or distant relative and most likely also P-TEFb and AF9 or ENL. The complex is conserved from yeast to humans. In Schizosaccharomyces pombe it contains Ell1, Eaf1, and Ebp1, but it is absent from S. cerevisiae. tmpzr1t_l9r_go_relaxed.owl ELL-EAF-EBP complex|ELL-EAF complex https://github.com/geneontology/go-ontology/issues/17203 cellular_component owl:Class GO:0019780 biolink:NamedThing FAT10 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier FAT10, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047821 biolink:NamedThing D-glutamate oxidase activity Catalysis of the reaction: D-glutamate + H2O + O2 = 2-oxoglutarate + NH3 + H2O2. tmpzr1t_l9r_go_relaxed.owl D-glutamic oxidase activity|D-glutamic acid oxidase activity|D-glutamate:oxygen oxidoreductase (deaminating) KEGG_REACTION:R00279|EC:1.4.3.7|MetaCyc:D-GLUTAMATE-OXIDASE-RXN|RHEA:10028 molecular_function owl:Class GO:1990827 biolink:NamedThing deaminase binding Binding to an enzyme that catalyzes the removal of an amino group from a substrate, producing ammonia (NH3). tmpzr1t_l9r_go_relaxed.owl sl 2015-08-19T23:48:32Z molecular_function owl:Class GO:0035237 biolink:NamedThing corazonin receptor activity Combining with the neuropeptide corazonin to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0005093 biolink:NamedThing Rab GDP-dissociation inhibitor activity Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0047798 biolink:NamedThing cyclomaltodextrinase activity Catalysis of the reaction: H2O + cyclomaltodextrin = linear maltodextrin. tmpzr1t_l9r_go_relaxed.owl cyclohexaglucanase activity|cyclodextrinase activity|cycloheptaglucanase activity|cyclomaltodextrin dextrin-hydrolase (decyclizing) EC:3.2.1.54|RHEA:23980|MetaCyc:CYCLOMALTODEXTRINASE-RXN molecular_function owl:Class GO:0050189 biolink:NamedThing phosphoenolpyruvate phosphatase activity Catalysis of the reaction: H(2)O + phosphoenolpyruvate = phosphate + pyruvate. tmpzr1t_l9r_go_relaxed.owl phosphoenolpyruvate phosphohydrolase activity|PEP phosphatase activity EC:3.1.3.60|RHEA:19997|KEGG_REACTION:R00208|MetaCyc:PHOSPHOENOLPYRUVATE-PHOSPHATASE-RXN molecular_function owl:Class GO:1990650 biolink:NamedThing inositol-2,4,5,6-tetrakisphosphate 5-phosphatase activity Catalysis of the reaction: 1D-myo-inositol 2,4,5,6-tetrakisphosphate + H2O = 1D-myo-inositol 2,4,6-trisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl al 2015-02-23T11:14:17Z molecular_function owl:Class GO:0102606 biolink:NamedThing octat-9-en-7-ol 5-monooxygenase activity Catalysis of the reaction: cyclooctat-9-en-7-ol + O2 + NADPH + H+ <=> cyclooctat-9-en-5,7-diol + H2O + NADP. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15431|RHEA:56820 molecular_function owl:Class GO:0003834 biolink:NamedThing beta-carotene 15,15'-dioxygenase activity Catalysis of the reaction: all-trans-beta-carotene + O2 = 2 all-trans-retinal. tmpzr1t_l9r_go_relaxed.owl carotene dioxygenase activity|carotene 15,15'-dioxygenase activity|beta-carotene 15,15'-monooxygenase activity https://github.com/geneontology/go-ontology/issues/21765 KEGG_REACTION:R00032|Reactome:R-HSA-975635|EC:1.13.11.63|MetaCyc:BETA-CAROTENE-1515-DIOXYGENASE-RXN|RHEA:32887 Formerly EC:1.13.11.n2, EC:1.13.11.21 and then EC 1.14.99.36. molecular_function owl:Class GO:0035646 biolink:NamedThing endosome to melanosome transport The directed movement of substances from endosomes to the melanosome, a specialised lysosome-related organelle. tmpzr1t_l9r_go_relaxed.owl bf 2011-01-24T01:30:07Z biological_process owl:Class GO:1905719 biolink:NamedThing protein localization to perinuclear region of cytoplasm A process in which a protein is transported to, or maintained in, a location within the perinuclear region of the cytoplasm. tmpzr1t_l9r_go_relaxed.owl protein localization in perinuclear region of cytoplasm|protein localisation in perinuclear region of cytoplasm|protein localization to perinuclear cytoplasm|protein localisation to perinuclear region of cytoplasm mah 2016-11-24T16:51:55Z biological_process owl:Class GO:0060776 biolink:NamedThing simple leaf morphogenesis The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T07:08:44Z biological_process owl:Class GO:0051062 biolink:NamedThing UDP reductase activity Catalysis of the reaction: dUDP + thioredoxin disulfide + H2O = UDP + thioredoxin. tmpzr1t_l9r_go_relaxed.owl UDP reduction RHEA:28026|MetaCyc:UDPREDUCT-RXN molecular_function owl:Class GO:1990592 biolink:NamedThing protein K69-linked ufmylation A protein ufmylation process in which a polymer of the ubiquitin-like protein UFM1 is formed by linkages between lysine residues at position 69 of the UFM1 monomers, is added to a protein. tmpzr1t_l9r_go_relaxed.owl jl 2014-12-15T17:01:23Z biological_process owl:Class GO:0103097 biolink:NamedThing CYP79F1 trihomomethionine monooxygenase activity Catalysis of the reaction: trihomomethionine + 2 O2 + 2 NADPH + 2 H+ <=> 3 H2O + carbon dioxide + 2 NADP + 6-methylthiohexanaldoxime. tmpzr1t_l9r_go_relaxed.owl RHEA:32723|MetaCyc:RXNQT-4310 molecular_function owl:Class GO:0003836 biolink:NamedThing beta-galactoside (CMP) alpha-2,3-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-R = CMP + alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-R. tmpzr1t_l9r_go_relaxed.owl CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase activity|CMP-N-acetylneuraminate:beta-D-galactoside alpha-2,3-N-acetylneuraminyl-transferase activity RHEA:21616|Reactome:R-HSA-4084984|Reactome:R-HSA-2046285|Reactome:R-HSA-1022129|Reactome:R-HSA-3656258|Reactome:R-HSA-1912378|Reactome:R-HSA-981497|Reactome:R-HSA-9603987|MetaCyc:2.4.99.4-RXN|Reactome:R-HSA-9605600|EC:2.4.99.4 molecular_function owl:Class GO:1990137 biolink:NamedThing plant seed peroxidase activity Catalysis of the reaction: R1H + R2OOH = R1OH + R2OH. tmpzr1t_l9r_go_relaxed.owl peroxygenase activity EC:1.11.2.3|MetaCyc:RXN-11819 tb 2013-07-03T12:49:20Z molecular_function owl:Class GO:0000343 biolink:NamedThing plastid-encoded plastid RNA polymerase complex A A plastid-encoded DNA-directed RNA polymerase complex that resembles eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. An additional subunit, a sigma factor, is required for promoter recognition. PEP-A is generated from the PEP-B form during chloroplast maturation to generate a complex composed of at least thirteen polypeptides that is not sensitive to the antibiotic rifampicin, like its precursor form the PEP-B complex. tmpzr1t_l9r_go_relaxed.owl PEP-A cellular_component owl:Class GO:0090547 biolink:NamedThing response to low humidity Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of low humidity stimulus, reduced moisture in the atmosphere. tmpzr1t_l9r_go_relaxed.owl tb 2013-04-17T13:46:28Z biological_process owl:Class GO:0050625 biolink:NamedThing 2-hydroxy-1,4-benzoquinone reductase activity Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H(+) + NADH = benzene-1,2,4-triol + NAD(+). tmpzr1t_l9r_go_relaxed.owl hydroxybenzoquinone reductase activity|2-hydroxy-1,4-benzoquinone:NADH oxidoreductase activity|1,2,4-trihydroxybenzene:NAD+ oxidoreductase activity|1,2,4-trihydroxybenzene:NAD oxidoreductase activity|NADH:2-hydroxy-1,4-benzoquinone oxidoreductase activity KEGG_REACTION:R05399|MetaCyc:1.6.5.7-RXN|UM-BBD_reactionID:r0667|EC:1.6.5.7|RHEA:12428 GO:0018540 molecular_function owl:Class GO:0014883 biolink:NamedThing transition between fast and slow fiber The process of conversion of fast-contracting muscle fibers to a slower character. This may involve slowing of contractile rate, slow myosin gene induction, increase in oxidative metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation. tmpzr1t_l9r_go_relaxed.owl transition fast-slow fibre|transition fast-slow fiber|transition between fast and slow fibre biological_process owl:Class GO:0047603 biolink:NamedThing acetoacetyl-CoA hydrolase activity Catalysis of the reaction: acetoacetyl-CoA + H(2)O = acetoacetate + CoA + H(+). tmpzr1t_l9r_go_relaxed.owl acetoacetyl coenzyme A deacylase activity|acetoacetyl coenzyme A hydrolase activity|acetoacetyl CoA deacylase activity RHEA:15673|KEGG_REACTION:R01358|MetaCyc:ACETOACETYL-COA-HYDROLASE-RXN|EC:3.1.2.11 molecular_function owl:Class GO:0033890 biolink:NamedThing ribonuclease D activity Catalysis of the exonucleolytic cleavage that removes extra residues from the 3'-terminus of tRNA to produce 5'-mononucleotides. tmpzr1t_l9r_go_relaxed.owl RNase D activity MetaCyc:3.1.13.5-RXN|EC:3.1.13.5 molecular_function owl:Class GO:0008997 biolink:NamedThing ribonuclease R activity Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction, leaving an undigested core of 3-5 nucleotides. tmpzr1t_l9r_go_relaxed.owl EC:3.1.11.- molecular_function owl:Class GO:0002334 biolink:NamedThing transitional two stage B cell differentiation The process in which immature B cells from the bone marrow acquire the specialized features of T2 stage B cells in the spleen. T2 stage B cells express CD23 but not CD21. tmpzr1t_l9r_go_relaxed.owl T2 stage B cell differentiation|transitional two stage B cell development|transitional two stage B-cell differentiation|transitional two stage B-lymphocyte differentiation|transitional two stage B lymphocyte differentiation Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. biological_process owl:Class GO:0018713 biolink:NamedThing 3-ketopimelyl-CoA thiolase activity Catalysis of the reaction: 3-ketopimeloyl-CoA + CoA = glutaryl-CoA + acetyl-CoA. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-8032|UM-BBD_reactionID:r0197 molecular_function owl:Class GO:0046592 biolink:NamedThing polyamine oxidase activity Catalysis of the oxidative degradation or interconversion of polyamines. tmpzr1t_l9r_go_relaxed.owl 1-N-acetylspermidine:oxygen oxidoreductase (deaminating)|N1-acetylspermidine:oxygen oxidoreductase (deaminating) MetaCyc:POLYAMINE-OXIDASE-RXN molecular_function owl:Class GO:0055058 biolink:NamedThing symmetric neuroblast division The process resulting in the physical partitioning and separation of a neuroblast into two equi-potent daughter cells. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0043263 biolink:NamedThing cellulosome An extracellular multi-enzyme complex containing up to 11 different enzymes aligned on a non-catalytic scaffolding glycoprotein. Functions to hydrolyze cellulose. tmpzr1t_l9r_go_relaxed.owl scaffoldin complex Wikipedia:Cellulosome GO:1990296 cellular_component owl:Class GO:0016161 biolink:NamedThing beta-amylase activity Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. tmpzr1t_l9r_go_relaxed.owl glycogenase activity|saccharogen amylase activity|1,4-alpha-D-glucan maltohydrolase activity|beta amylase activity MetaCyc:RXN-1827|EC:3.2.1.2|MetaCyc:RXN-12279 molecular_function owl:Class GO:0005113 biolink:NamedThing patched binding Binding to a patched (ptc) protein, a receptor for hedgehog proteins. tmpzr1t_l9r_go_relaxed.owl ptc binding|ptc ligand|patched ligand molecular_function owl:Class GO:0050078 biolink:NamedThing malonate CoA-transferase activity Catalysis of the reaction: acetyl-CoA + malonate = acetate + malonyl-CoA. tmpzr1t_l9r_go_relaxed.owl acetyl-CoA:malonate CoA-transferase activity|malonate coenzyme A-transferase activity RHEA:18817|EC:2.8.3.3|MetaCyc:MALONATE-COA-TRANSFERASE-RXN|KEGG_REACTION:R00743 molecular_function owl:Class GO:0014728 biolink:NamedThing regulation of the force of skeletal muscle contraction Any process that modulates the frequency, rate or extent of the force of skeletal muscle contraction. The force of skeletal muscle contraction is produced by acto-myosin interaction processes through the formation of cross bridges. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102630 biolink:NamedThing gossypetin 8-methyl ester 3'-O-methyltransferase activity Catalysis of the reaction: 3',4',5,7-pentahydroxy-8-methoxyflavon-3-olate + S-adenosyl-L-methionine <=> gossypetin 3',8-dimethyl ether + S-adenosyl-L-homocysteine + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15536 molecular_function owl:Class GO:0051211 biolink:NamedThing anisotropic cell growth The process in which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell. tmpzr1t_l9r_go_relaxed.owl non-isotropic cell growth biological_process owl:Class GO:1990808 biolink:NamedThing F-bar domain binding Binding to an F-BAR domain of a protein, a domain of about 60 residues that occurs in a wide range of cytoskeletal proteins. tmpzr1t_l9r_go_relaxed.owl vw 2015-07-21T18:43:00Z molecular_function owl:Class GO:0034829 biolink:NamedThing 2-hydroxydec-2,4-diene-1,10-dioate hydratase activity Catalysis of the reaction: 2-hydroxydec-2,4-diene-1,10-dioate + H2O = (2Z)-2,4-dihydroxydec-2-enedioate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r1172 molecular_function owl:Class GO:0062052 biolink:NamedThing starch granule initiation The sequence of events that initiates (or primes) the synthesis of semi-crystalline starch granules within photosynthetic chloroplasts or non-photosynthetic amyloplasts. tmpzr1t_l9r_go_relaxed.owl dph 2018-06-08T17:18:57Z biological_process owl:Class GO:0055091 biolink:NamedThing phospholipid homeostasis Any process involved in the maintenance of an internal steady state of phospholipid within an organism or cell. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0019535 biolink:NamedThing ferric-vibriobactin transmembrane transporter activity Enables the transfer of ferric-vibriobactin ions from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071596 biolink:NamedThing ubiquitin-dependent protein catabolic process via the N-end rule pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the N-end rule pathway. In the N-end rule pathway, destabilizing N-terminal residues (N-degrons) in substrates are recognized by E3 ligases (N-recognins), whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation. tmpzr1t_l9r_go_relaxed.owl ubiquitin-dependent protein breakdown via the N-end rule pathway|ubiquitin-dependent protein degradation via the N-end rule pathway|ubiquitin-dependent protein catabolism via the N-end rule pathway mah 2010-01-29T03:01:09Z biological_process owl:Class GO:0052367 biolink:NamedThing disruption by host of symbiont cellular component The chemical reactions and pathways performed by an organism resulting in the breakdown of cellular components of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl degradation of symbiont cellular component by organism|catabolism of symbiont structural constituent by organism|catabolism of symbiont cellular component by organism|disassembly by host of symbiont cellular component biological_process owl:Class GO:0032867 biolink:NamedThing L-arabinose:NADP reductase activity Catalysis of the reaction: L-arabitol + NADP+ = L-arabinose + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl arabinose:NADP reductase activity|arabinose reductase activity RHEA:25229|KEGG_REACTION:R01759|MetaCyc:RXN-8772|SABIO-RK:1858 molecular_function owl:Class GO:0021998 biolink:NamedThing neural plate mediolateral regionalization The process that regulates the coordinated growth and differentiation that establishes the non-random mediolateral spatial arrangement of the neural plate. tmpzr1t_l9r_go_relaxed.owl neural plate mediolateral pattern formation biological_process owl:Class GO:0102621 biolink:NamedThing emindole-SB NADPH:oxygen oxidoreductase (14,15-epoxidizing) activity Catalysis of the reaction: emindole-SB + O2 + NADPH + H+ <=> 14,15-epoxyemindole-SB + NADP + H2O. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15496 molecular_function owl:Class GO:0031722 biolink:NamedThing hemoglobin beta binding Binding to a hemoglobin beta chain. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0010540 biolink:NamedThing basipetal auxin transport The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0042614 biolink:NamedThing CD70 receptor binding Binding to a CD70, a receptor found on the surface of most activated B cells and some activated T cells. tmpzr1t_l9r_go_relaxed.owl CD27 receptor activity|CD27L binding molecular_function owl:Class GO:0080106 biolink:NamedThing 7-methylthiopropyl glucosinolate S-oxygenase activity Catalysis of the reaction: 7-methylthiopropyl-glucosinolate = 7-methylsulfinylpropyl-glucosinolate. tmpzr1t_l9r_go_relaxed.owl dhl 2009-04-23T04:29:37Z molecular_function owl:Class GO:0071820 biolink:NamedThing N-box binding Binding to an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses. tmpzr1t_l9r_go_relaxed.owl N-box promoter binding|N box binding Note that as agreed during the transcription overhaul, terms specifying binding to specific transcription regulatory motifs are no longer being created. The level of specificity GO has decided to go to is the "core promoter", "core promoter proximal region" and "enhancer". To capture more detail, please consider using column 16. mah 2010-09-07T11:55:32Z molecular_function owl:Class GO:0102930 biolink:NamedThing 4-hydroxybenzoate geranyltransferase activity Catalysis of the reaction: geranyl diphosphate + 4-hydroxybenzoic acid = 3-geranyl-4-hydroxybenzoate + diphosphoric acid. tmpzr1t_l9r_go_relaxed.owl EC:2.5.1.93|RHEA:27854|MetaCyc:RXN-8920 molecular_function owl:Class GO:0120326 biolink:NamedThing appressorium-mediated entry into host Penetration by a symbiont into a host organism via an appressorium. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl appressorium-mediated penetration into host|appressorium-mediated host invasion|appressorium-mediated host penetration|appressorium-mediated invasion into host https://github.com/geneontology/go-ontology/issues/21505 krc 2021-08-04T00:48:35Z biological_process owl:Class GO:0001697 biolink:NamedThing histamine-induced gastric acid secretion The regulated release of gastric acid induced by the interaction of histamine with H2 type receptor receptors with subsequent activation of adenylate cyclase and elevation of intracellular cyclic AMP. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0052926 biolink:NamedThing dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity Catalysis of the reaction: alpha-D-man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl D-mannosyl phosphate = H(+) + alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl phosphate. tmpzr1t_l9r_go_relaxed.owl dolichylphosphomannose-dependent ALG9 mannosyltransferase activity RHEA:29531|MetaCyc:RXN-5467|EC:2.4.1.259|KEGG_REACTION:R06259 molecular_function owl:Class GO:0102276 biolink:NamedThing 2-oxoglutarate oxygenase/decarboxylase (ethylene-forming) activity Catalysis of the reaction: 2-oxoglutarate(2-) + O2 + 2 H+ <=> ethene + 3 carbon dioxide + H2O. tmpzr1t_l9r_go_relaxed.owl RHEA:31523|EC:1.13.12.19|MetaCyc:RXN-12538 molecular_function owl:Class GO:0018731 biolink:NamedThing 1-oxa-2-oxocycloheptane lactonase activity Catalysis of the reaction: 1-oxa-2-oxocycloheptane + H2O = 6-hydroxyhexanoate. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0167 molecular_function owl:Class GO:0052726 biolink:NamedThing inositol-1,3,4-trisphosphate 5-kinase activity Catalysis of the reaction: 1D-myo-inositol 1,3,4-trisphosphate + ATP = 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ADP + 2 H(+). tmpzr1t_l9r_go_relaxed.owl IP3 5-kinase activity|inositol-trisphosphate 5-kinase activity|ATP:1D-myo-inositol-1,3,4-trisphosphate 5-phosphotransferase activity|ins(1,3,4)P(3) 5-kinase activity|inositol 1,3,4-trisphosphate 5-kinase activity|Ins(1,3,4)P3 5-kinase activity|1D-myo-inositol-trisphosphate 5-kinase activity Reactome:R-HSA-1855172|EC:2.7.1.159|KEGG_REACTION:R03428|RHEA:13253|Reactome:R-HSA-994140|MetaCyc:2.7.1.139-RXN ai 2011-08-16T12:43:11Z molecular_function owl:Class GO:0140549 biolink:NamedThing spore inner membrane The membrane surrounding the spore core (endospore core) that separates it from its external environment. tmpzr1t_l9r_go_relaxed.owl spore membrane https://github.com/geneontology/go-ontology/issues/20359 pg 2020-11-12T10:00:15Z cellular_component owl:Class GO:0047753 biolink:NamedThing choline-sulfatase activity Catalysis of the reaction: choline sulfate + H(2)O = choline + H(+) + sulfate. tmpzr1t_l9r_go_relaxed.owl choline-sulphatase activity|choline-sulfate sulfohydrolase activity KEGG_REACTION:R01028|EC:3.1.6.6|RHEA:20820|MetaCyc:CHOLINE-SULFATASE-RXN molecular_function owl:Class GO:0060063 biolink:NamedThing Spemann organizer formation at the embryonic shield Formation of the specialized region of the embryonic shield of the embryo that acts as the main signaling center establishing the teleost body plan. tmpzr1t_l9r_go_relaxed.owl Spemann-Mangold organizer formation at the embryonic shield|Spemann's organizer formation at the embryonic shield Occurs in Teleost fish. biological_process owl:Class GO:0140285 biolink:NamedThing endosome fission The process by which early and late endosomes undergo budding and fission reactions that separate regions destined for lysosomal degradation from carriers to be recycled to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl pg 2018-10-30T10:36:33Z biological_process owl:Class GO:0016034 biolink:NamedThing maleylacetoacetate isomerase activity Catalysis of the reaction: 4-maleylacetoacetate = 4-fumarylacetoacetate. tmpzr1t_l9r_go_relaxed.owl 4-maleylacetoacetate cis-trans-isomerase activity|maleylacetone isomerase activity|maleylacetone cis-trans-isomerase activity|maleylacetoacetic isomerase activity UM-BBD_reactionID:r0106|MetaCyc:MALEYLACETOACETATE-ISOMERASE-RXN|EC:5.2.1.2|RHEA:14817|Reactome:R-HSA-71173 GO:0018841 molecular_function owl:Class GO:0090534 biolink:NamedThing calcium ion-transporting ATPase complex Protein complex that carries out the reaction: ATP + H2O + Ca2+(out) = ADP + phosphate + Ca2+(in). tmpzr1t_l9r_go_relaxed.owl tb 2013-02-07T15:52:58Z cellular_component owl:Class GO:0102990 biolink:NamedThing 5-n-alk(en)ylresorcinol O-methyltransferase activity Catalysis of the reaction: 5-(pentadeca-8,11,14-trien-1-yl)resorcinol + S-adenosyl-L-methionine <=> H+ + 5-(pentadeca-8,11,14-trien-1-yl)resorcinol monomethyl ether + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-9619|RHEA:26325 molecular_function owl:Class GO:0050591 biolink:NamedThing quinine 3-monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + quinine = 3-hydroxyquinine + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl quinine 3-hydroxylase activity|quinine,NADPH:oxygen oxidoreductase activity|nifedipine oxidase activity MetaCyc:1.14.13.67-RXN|EC:1.14.14.55|RHEA:20149|KEGG_REACTION:R05727 molecular_function owl:Class GO:0018849 biolink:NamedThing muconate cycloisomerase activity Catalysis of the reaction: 2,5-dihydro-5-oxofuran-2-acetate = cis,cis-hexadienedioate. tmpzr1t_l9r_go_relaxed.owl cis,cis-muconate cycloisomerase activity|muconate cycloisomerase I activity|muconate lactonizing enzyme activity|cis,cis-muconate-lactonizing enzyme|muconate lactonizing enzyme I activity https://github.com/geneontology/go-ontology/issues/21794 UM-BBD_enzymeID:e0133|EC:5.5.1.1|MetaCyc:MUCONATE-CYCLOISOMERASE-RXN|RHEA:30031 molecular_function owl:Class GO:0031041 biolink:NamedThing O-glycan processing, core 5 The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 5 O-glycan structure, GalNAc-alpha-(1->3)-GalNAc. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0044568 biolink:NamedThing secondary cell wall cellulose synthase complex A large, multimeric protein complex which catalyzes the biosynthesis of cellulose for the plant secondary cell wall. In Arabidopsis, contains the essential component proteins CESA8, CESA7, and CESA4. tmpzr1t_l9r_go_relaxed.owl secondary cell-wall cellulose synthase complex|secondary cell wall CESA complex jl 2012-04-18T12:55:04Z cellular_component owl:Class GO:0102430 biolink:NamedThing alpha-linolenate delta5 desaturase activity Catalysis of the reaction: alpha-linolenate + O2 + a reduced electron acceptor = coniferonate + 2 H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl RHEA:38039|MetaCyc:RXN-13857 molecular_function owl:Class GO:1990311 biolink:NamedThing type-I cohesin domain binding Binding to a type-I cohesin domain of a protein. Type-I cohesin domain is the binding partner of type-I dockerin domain. tmpzr1t_l9r_go_relaxed.owl tt 2014-03-07T04:47:31Z molecular_function owl:Class GO:0017075 biolink:NamedThing syntaxin-1 binding Binding to a syntaxin-1 SNAP receptor. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0102474 biolink:NamedThing eriodictyol dibenzoylmethane tautomer 6C-glucosyltransferase activity Catalysis of the reaction: eriodictyol dibenzoylmethane tautomer + UDP-alpha-D-glucose <=> 6C-beta-D-glucosyl-2-hydroxyeriodictyol + UDP + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-14080 molecular_function owl:Class GO:1990250 biolink:NamedThing transcription-coupled nucleotide-excision repair, DNA damage recognition complex A protein complex that is capable of identifying lesions in DNA on the actively transcribed strand of the DNA duplex as well as a small subset of lesions not recognized by the general nucleotide-excision repair pathway. The wide range of substrate specificity suggests that the repair complex recognizes distortions in the DNA helix. It subsequently recruits a nucleotide-excision repair, preincision complex. tmpzr1t_l9r_go_relaxed.owl bhm 2013-12-05T16:28:45Z cellular_component owl:Class GO:0062202 biolink:NamedThing Labd-13(16),14-diene-9-ol synthase activity Catalysis of the reaction: peregrinol diphosphate = diphosphate + labd-13(16),14-diene-9-ol. tmpzr1t_l9r_go_relaxed.owl RHEA:62184 dph 2020-01-02T15:46:00Z molecular_function owl:Class GO:0003282 biolink:NamedThing ventricular septum intermedium development The progression of the ventricular septum intermedium over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl dph 2009-10-20T10:09:53Z biological_process owl:Class GO:0080123 biolink:NamedThing jasmonate-amino synthetase activity Catalysis of the reaction: jasmonate + an amino acid = an amide-linked jasmonyl-amino acid conjugate. The substrates of this reaction include non-standard amino acids, such as ACC (1-aminocyclopropane-1-carboxylate). tmpzr1t_l9r_go_relaxed.owl jasmonate-amino acid conjugate synthetase activity|jasmonate-amino acid synthetase activity|jasmonyl-amino synthetase activity|jasmonate-amido synthetase activity|jasmonate:amino acid synthetase activity|jasmonic acid-amino synthetase activity|ja-amino synthetase activity dhl 2009-04-28T04:08:35Z molecular_function owl:Class GO:0034999 biolink:NamedThing oligosaccharyltransferase II complex An oligosaccharyltransferase (OST) complex that contains the seven polypeptides found in OST complex I, plus heterotrimeric Sec61alpha-beta-gamma. Of the three forms of mammalian OST complexes identified, the OSTII complex has intermediate affinity for ribosomes. tmpzr1t_l9r_go_relaxed.owl OSTCII cellular_component owl:Class GO:0047697 biolink:NamedThing beta-alanopine dehydrogenase activity Catalysis of the reaction: (R)-beta-alanopine + H(2)O + NAD(+) = beta-alanine + H(+) + NADH + pyruvate. tmpzr1t_l9r_go_relaxed.owl N-(D-1-carboxyethyl)-beta-alanine:NAD+ oxidoreductase (beta-alanine-forming)|b-alanopine dehydrogenase activity MetaCyc:BETA-ALANOPINE-DEHYDROGENASE-RXN|EC:1.5.1.26|RHEA:21684|KEGG_REACTION:R00906 molecular_function owl:Class GO:0046577 biolink:NamedThing long-chain-alcohol oxidase activity Catalysis of the reaction: 2 long-chain alcohol + O2 = 2 long-chain aldehyde + 2 H2O. tmpzr1t_l9r_go_relaxed.owl fatty alcohol:oxygen oxidoreductase activity|fatty alcohol oxidase activity|long-chain fatty alcohol oxidase activity|long-chain fatty acid oxidase activity|long-chain-alcohol:oxygen oxidoreductase activity RHEA:22756|MetaCyc:LONG-CHAIN-ALCOHOL-OXIDASE-RXN|EC:1.1.3.20 molecular_function owl:Class GO:0071567 biolink:NamedThing UFM1 hydrolase activity Catalysis of the hydrolysis of UFM1, a small ubiquitin-related modifier, from previously modified substrates. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:08:34Z molecular_function owl:Class GO:0033448 biolink:NamedThing AGG codon-amino acid adaptor activity A triplet codon-amino acid adaptor activity that recognizes an AGG codon. tmpzr1t_l9r_go_relaxed.owl arginine tRNA Note that in the standard genetic code, AGG codes for arginine. molecular_function owl:Class GO:0052683 biolink:NamedThing (Z)-gamma-bisabolene synthase activity Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (Z)-gamma-bisabolene + diphosphate. tmpzr1t_l9r_go_relaxed.owl (2E,6E)-farnesyl-diphosphate diphosphate-lyase [(Z)-gamma-bisabolene-forming] activity EC:4.2.3.40|MetaCyc:RXN-10005|RHEA:26081 molecular_function owl:Class GO:0032593 biolink:NamedThing insulin-responsive compartment A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2. tmpzr1t_l9r_go_relaxed.owl GSC|GLUT4 storage compartment|IRC cellular_component owl:Class GO:0106145 biolink:NamedThing scopoletin 8-hydroxylase activity Catalyzes of the reaction: scopoletin + 2-oxoglutarate+O2=fraxetin +succinate+ CO2). tmpzr1t_l9r_go_relaxed.owl RHEA:57848|EC:1.14.11.60 hjd 2018-09-07T18:28:16Z molecular_function owl:Class GO:0071566 biolink:NamedThing UFM1 activating enzyme activity Catalysis of the activation of the small ubiquitin-related modifier UFM1, through the formation of an ATP-dependent high-energy thiolester bond. tmpzr1t_l9r_go_relaxed.owl mah 2010-01-20T04:06:05Z molecular_function owl:Class GO:0008677 biolink:NamedThing 2-dehydropantoate 2-reductase activity Catalysis of the reaction: (R)-pantoate + NADP(+) = 2-dehydropantoate + H(+) + NADPH. tmpzr1t_l9r_go_relaxed.owl (R)-pantoate:NADP+ 2-oxidoreductase activity|2-oxopantoate reductase activity|ketopantoate reductase activity|ketopantoic acid reductase activity|2-ketopantoic acid reductase activity|2-ketopantoate reductase activity|KPA reductase activity MetaCyc:2-DEHYDROPANTOATE-REDUCT-RXN|KEGG_REACTION:R02472|RHEA:16233|EC:1.1.1.169 molecular_function owl:Class GO:0018787 biolink:NamedThing 4-chlorobenzoyl-CoA dehalogenase activity Catalysis of the reaction: 4-chlorobenzoyl-CoA + H2O = 4-hydroxybenzoyl CoA + chloride. tmpzr1t_l9r_go_relaxed.owl 4-chlorobenzoyl CoA chlorohydrolase activity MetaCyc:3.8.1.7-RXN|RHEA:14853|EC:3.8.1.7|UM-BBD_enzymeID:e0113 molecular_function owl:Class GO:0044681 biolink:NamedThing sulfopyruvate decarboxylase complex A complex of two polypeptides which form a dodecamer (A6B6). Catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde. This reaction is involved in coenzyme M biosynthesis. tmpzr1t_l9r_go_relaxed.owl jl 2012-08-09T11:12:47Z cellular_component owl:Class GO:1990323 biolink:NamedThing collagen type XXIV trimer A collagen homotrimer of alpha1(XXIV) chains; type XXIV collagen triple helices may participate in regulating type I collagen fibrillogenesis at specific anatomical locations during fetal development. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-14T22:05:53Z cellular_component owl:Class GO:0060366 biolink:NamedThing lambdoid suture morphogenesis The process in which the lambdoid suture is generated and organized. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102730 biolink:NamedThing cathasterone hydroxylase activity Catalysis of the reaction: cathasterone + O2 + a reduced electron acceptor <=> teasterone + H2O + an oxidized electron acceptor. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-716 molecular_function owl:Class GO:1990829 biolink:NamedThing C-rich single-stranded DNA binding Binding to C-rich, single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl C-rich ssDNA binding sl 2015-08-20T16:05:12Z molecular_function owl:Class GO:0009012 biolink:NamedThing aminoglycoside 3''-adenylyltransferase activity Catalysis of the reaction: ATP + streptomycin = 3''-adenylylstreptomycin + diphosphate + H(+). tmpzr1t_l9r_go_relaxed.owl streptomycin 3''-adenylyltransferase activity|ATP:streptomycin 3''-adenylyltransferase activity|AAD (3'') RHEA:20245|MetaCyc:STREPTOMYCIN-3-ADENYLYLTRANSFERASE-RXN|EC:2.7.7.47|KEGG_REACTION:R02226 molecular_function owl:Class GO:0102479 biolink:NamedThing quercetin 3-O-beta:-D-galactosyltransferase activity Catalysis of the reaction: quercetin-7-olate + UDP-D-galactose <=> quercetin 3-O-beta-D-galactopyranoside + UDP(3-) + H+. tmpzr1t_l9r_go_relaxed.owl EC:2.4.1.234|MetaCyc:RXN-14109 molecular_function owl:Class GO:0051117 biolink:NamedThing ATPase binding Binding to an ATPase, any enzyme that catalyzes the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl molecular_function owl:Class GO:0071058 biolink:NamedThing alpha3-beta1 integrin-CD151 complex A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD151. tmpzr1t_l9r_go_relaxed.owl ITGA3-ITGB1-CD151 complex mah 2009-11-03T04:00:39Z cellular_component owl:Class GO:0102963 biolink:NamedThing (S)-corytuberine synthase activity Catalysis of the reaction: H+ + (S)-reticulinium(1+) + NADPH + O2 <=> (S)-corytuberine + NADP + 2 H2O. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21133 EC:1.14.19.51|MetaCyc:RXN-9314|RHEA:51540 molecular_function owl:Class GO:0050125 biolink:NamedThing N-benzyloxycarbonylglycine hydrolase activity Catalysis of the reaction: N-benzyloxycarbonylglycine + H(2)O + H(+) = benzyl alcohol + CO(2) + glycine. tmpzr1t_l9r_go_relaxed.owl nalpha-carbobenzoxyamino acid amidohydrolase activity|N-benzyloxycarbonylglycine urethanehydrolase activity|nalpha-benzyloxycarbonyl amino acid urethane hydrolase activity|nalpha-benzyloxycarbonyl amino acid urethane hydrolase I|benzyloxycarbonylglycine hydrolase activity EC:3.5.1.58|MetaCyc:N-BENZYLOXYCARBONYLGLYCINE-HYDROLASE-RXN|KEGG_REACTION:R02551|RHEA:20900 molecular_function owl:Class GO:0047163 biolink:NamedThing 3,4-dichloroaniline N-malonyltransferase activity Catalysis of the reaction: 3,4-dichloroaniline + malonyl-CoA = N-(3,4-dichlorophenyl)malonamate + CoA. tmpzr1t_l9r_go_relaxed.owl malonyl-CoA:3,4-dichloroaniline N-malonyltransferase activity MetaCyc:2.3.1.114-RXN|RHEA:21060|EC:2.3.1.114|KEGG_REACTION:R04050 molecular_function owl:Class GO:0031892 biolink:NamedThing type 2 vasoactive intestinal polypeptide receptor binding Binding to a type 2 vasoactive intestinal polypeptide receptor. tmpzr1t_l9r_go_relaxed.owl type 3 PACAP receptor binding|type 2 vasoactive intestinal polypeptide receptor ligand molecular_function owl:Class GO:0102243 biolink:NamedThing ATP:geranylgeraniol phosphotransferase activity Catalysis of the reaction: (E,E)-geranylgeraniol + ATP = H+ + all-trans-geranyl-geranyl monophosphate + ADP. tmpzr1t_l9r_go_relaxed.owl EC:2.7.1.216|MetaCyc:RXN-12325|RHEA:61660 molecular_function owl:Class GO:0039679 biolink:NamedThing viral occlusion body A crystalline protein matrix surrounding the nucleocapsids of some insect viruses after their release in the environment. Produced in the host cell, the occlusion body protects the infectious virion after death of the host. tmpzr1t_l9r_go_relaxed.owl VZ:1949 bf 2013-09-26T14:17:10Z cellular_component owl:Class GO:0102913 biolink:NamedThing 3-aminomethylindole N-methyltransferase activity Catalysis of the reaction: indol-3-ylmethylamine + S-adenosyl-L-methionine = H+ + N-methyl-3-aminomethylindole + S-adenosyl-L-homocysteine. tmpzr1t_l9r_go_relaxed.owl RHEA:52268|MetaCyc:RXN-8686 molecular_function owl:Class GO:0101014 biolink:NamedThing [isocitrate dehydrogenase (NADP+)] phosphatase activity Catalysis of the reaction: [isocitrate dehydrogenase] phosphate + H2O = [isocitrate dehydrogenase] + phosphate. tmpzr1t_l9r_go_relaxed.owl isocitrate dehydrogenase kinase/phosphatase activity MetaCyc:ICITDEHASE-KIN-PHOSPHA molecular_function owl:Class GO:0047505 biolink:NamedThing (-)-menthol monooxygenase activity Catalysis of the reaction: (-)-menthol + H(+) + NADPH + O(2) = 1,4-menthane-3,8-diol + H(2)O + NADP(+). tmpzr1t_l9r_go_relaxed.owl l-menthol monooxygenase activity|(-)-menthol,NADPH:oxygen oxidoreductase (8-hydroxylating) EC:1.14.13.46|RHEA:11648|MetaCyc:--MENTHOL-MONOOXYGENASE-RXN|KEGG_REACTION:R02178 molecular_function owl:Class GO:0060780 biolink:NamedThing intercalary leaflet morphogenesis The process in which the intercalary leaflet attains its shape. An intercalary leaflet is a leaflet that develops between primary leaflets. tmpzr1t_l9r_go_relaxed.owl dph 2009-07-25T07:20:46Z biological_process owl:Class GO:0018543 biolink:NamedThing 4-amino-2-nitroso-6-nitrotoluene reductase activity Catalysis of the reaction: 4-amino-2-hydroxylamino-6-nitrotoluene + NADP+ = NADPH + H+ + 4-amino-2-nitroso-6-nitrotoluene. tmpzr1t_l9r_go_relaxed.owl UM-BBD_reactionID:r0464 molecular_function owl:Class GO:0048105 biolink:NamedThing establishment of body hair planar orientation Orientation of body hairs, projections from the surface of an organism, such that the hairs all point in a uniform direction along the surface. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0050091 biolink:NamedThing melilotate 3-monooxygenase activity Catalysis of the reaction: 3-(2-hydroxyphenyl)propanoate + H(+) + NADH + O(2) = 3-(2,3-dihydroxyphenyl)propanoate + H(2)O + NAD(+). tmpzr1t_l9r_go_relaxed.owl melilotate hydroxylase activity|3-(2-hydroxyphenyl)propanoate,NADH:oxygen oxidoreductase (3-hydroxylating)|melilotic hydroxylase activity|2-hydroxyphenylpropionic hydroxylase activity|2-hydroxyphenylpropionate hydroxylase activity EC:1.14.13.4|MetaCyc:MELILOTATE-3-MONOOXYGENASE-RXN|RHEA:17669|KEGG_REACTION:R03369 molecular_function owl:Class GO:0050139 biolink:NamedThing nicotinate-N-glucosyltransferase activity Catalysis of the reaction: nicotinate + UDP-D-glucose = N-(beta-D-glucosyl)nicotinate + UDP. tmpzr1t_l9r_go_relaxed.owl nicotinate glucosyltransferase activity|UDP-glucose:nicotinate N-glucosyltransferase activity|UDPglucose:nicotinate N-glucosyltransferase activity|UDP-glucose:nicotinic acid-N-glucosyltransferase activity|uridine diphosphoglucose-nicotinate N-glucosyltransferase activity MetaCyc:NICOTINATE-GLUCOSYLTRANSFERASE-RXN|RHEA:19437|KEGG_REACTION:R01722|EC:2.4.1.196 molecular_function owl:Class GO:0018557 biolink:NamedThing 1,2-dihydroxyfluorene 1,1-alpha-dioxygenase activity Catalysis of the reaction: 1,2-dihydroxyfluorene + O2 = 2-hydroxy-4-(2-oxo-1,3-dihydro-2H-inden-1-ylidene) but-2-enoic acid. tmpzr1t_l9r_go_relaxed.owl EC:1.13.11.-|UM-BBD_reactionID:r0422 molecular_function owl:Class GO:0102589 biolink:NamedThing cyanidin 3-O-glucoside 3'',6''-O-dimalonyltransferase activity Catalysis of the reaction: cyanidin 3-O-(6-O-malonyl-beta-D-glucoside) + malonyl-CoA(5-) <=> cyanidin 3-O-(3''', 6''-O-dimalonyl-beta-glucopyranoside) + coenzyme A. tmpzr1t_l9r_go_relaxed.owl MetaCyc:RXN-15336 molecular_function owl:Class GO:0032295 biolink:NamedThing ensheathment of neuronal cell bodies The process in which satellite glial cells isolate neuronal cell bodies. tmpzr1t_l9r_go_relaxed.owl biological_process owl:Class GO:0102219 biolink:NamedThing phosphogluco-amylopectin water dikinase activity Catalysis of the reaction: n ATP + n H2O + a 6-phosphogluco-amylopectin = n AMP + n hydrogenphosphate + a 6-phosphogluco-3-phosphogluco-amylopectin. tmpzr1t_l9r_go_relaxed.owl EC:2.7.9.5|MetaCyc:RXN-12204 molecular_function owl:Class GO:0052660 biolink:NamedThing R-lactaldehyde reductase activity Catalysis of the reaction: (R)-propane-1,2-diol + NAD+ = (R)-lactaldehyde + NADH + H+. tmpzr1t_l9r_go_relaxed.owl D-lactaldehyde:propanediol oxidoreductase activity|(R)-propane-1,2-diol:NAD+ oxidoreductase activity KEGG_REACTION:R03080|RHEA:23872|MetaCyc:RXN-8641 molecular_function owl:Class GO:1990175 biolink:NamedThing EH domain binding Binding to an EH domain of a protein. The EH stand for Eps15 homology. This was originally identified as a motif present in three copies at the NH2-termini of Eps15 and of the related molecule Eps15R. tmpzr1t_l9r_go_relaxed.owl hjd 2013-08-27T20:14:56Z molecular_function owl:Class GO:0106173 biolink:NamedThing COPII-coated vesicle lumen The volume enclosed by the membrane of a COPII-coated endocytic vesicle. tmpzr1t_l9r_go_relaxed.owl hjd 2019-02-11T18:16:22Z cellular_component owl:Class GO:0034685 biolink:NamedThing integrin alphav-beta6 complex An integrin complex that comprises one alphav subunit and one beta6 subunit. tmpzr1t_l9r_go_relaxed.owl alphav-beta6 integrin complex|ITGAV-ITGB6 complex cellular_component owl:Class GO:1990325 biolink:NamedThing collagen type XXVII trimer A collagen homotrimer of alpha1(XXVII) chains. These trimers form thin, non-striated fibrils. Type XXVII collagen triple helices play a role during the calcification of cartilage and the transition of cartilage to bone. tmpzr1t_l9r_go_relaxed.owl bhm 2014-03-16T23:13:15Z cellular_component owl:Class GO:0047458 biolink:NamedThing beta-pyrazolylalanine synthase activity Catalysis of the reaction: O-acetyl-L-serine + pyrazole = 3-(pyrazol-1-yl)-L-alanine + acetate + H(+). tmpzr1t_l9r_go_relaxed.owl O3-acetyl-L-serine:pyrazole 1-(2-amino-2-carboxyethyl)transferase activity|BPA-synthase activity|pyrazolylalaninase activity|beta-pyrazolylalanine synthase (acetylserine) activity|beta-(1-pyrazolyl)alanine synthase activity|O(3)-acetyl-L-serine acetate-lyase (adding pyrazole) activity|O3-acetyl-L-serine acetate-lyase (adding pyrazole)|3-O-acetyl-L-serine:pyrazole 1-(2-amino-2-carboxyethyl)transferase activity|pyrazolealanine synthase activity|beta-pyrazolealanine synthase activity RHEA:13117|MetaCyc:2.5.1.51-RXN|EC:2.5.1.51|KEGG_REACTION:R03134 molecular_function owl:Class RO:0002092 biolink:NamedThing happens during tmpzr1t_l9r_go_relaxed.owl RO:0002092|RO:0002092 external|external happens_during|happens_during owl:ObjectProperty RO:0002093 biolink:NamedThing ends_during tmpzr1t_l9r_go_relaxed.owl RO:0002093|RO:0002093 external|external ends_during|ends_during owl:ObjectProperty BFO:0000050 biolink:NamedThing part of tmpzr1t_l9r_go_relaxed.owl BFO:0000050|BFO:0000050 external|external part_of|part_of owl:ObjectProperty BFO:0000051 biolink:NamedThing has part tmpzr1t_l9r_go_relaxed.owl BFO:0000051|BFO:0000051 external|external has_part|has_part owl:TransitiveProperty RO:0002213 biolink:NamedThing positively regulates tmpzr1t_l9r_go_relaxed.owl RO:0002213|RO:0002213 external|external positively_regulates|positively_regulates owl:ObjectProperty regulates biolink:NamedThing regulates tmpzr1t_l9r_go_relaxed.owl RO:0002211|RO:0002211 external|external regulates|regulates owl:TransitiveProperty RO:0002212 biolink:NamedThing negatively regulates tmpzr1t_l9r_go_relaxed.owl RO:0002212|RO:0002212 external|external negatively_regulates|negatively_regulates owl:ObjectProperty GO:0010708 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048062 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class IAO:0000227 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:1902505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072424 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019947 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_synapse biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl synapse GO slim owl:AnnotationProperty GOP:gocheck_do_not_annotate biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Term not to be used for direct annotation owl:AnnotationProperty NCBITaxon:8782 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:1904834 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044253 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_drosophila biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Drosophila GO slim owl:AnnotationProperty GO:0001592 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903827 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904822 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006136 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042114 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072650 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046735 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_generic biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Generic GO slim owl:AnnotationProperty GO:0008624 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000778 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_candida biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Candida GO slim owl:AnnotationProperty GO:0000371 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:3312 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GOP:goslim_metagenomics biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Metagenomics GO slim owl:AnnotationProperty GO:0019591 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007332 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:gocheck_do_not_manually_annotate biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Term not to be used for direct manual annotation owl:AnnotationProperty GO:0052552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045086 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:33208 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0042738 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031678 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150134 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001948 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052483 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_pir biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl PIR GO slim owl:AnnotationProperty GO:0003280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl NCBITaxon:33090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0052669 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002219 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003936 biolink:NamedThing obsolete hydrogen-transporting two-sector ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out). tmpzr1t_l9r_go_relaxed.owl proton-transporting two-sector ATPase activity|hydrogen-transporting two-sector ATPase activity This term was made obsolete because it refers to a bifunctional gene product. GO:0046961|GO:0046933 True GO:0004006|GO:0008729 molecular_function owl:Class GO:1990291 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990335 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045424 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:2759 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0042237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042235 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030453 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051488 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990290 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072483 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008185 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045308 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_plant biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Plant GO slim owl:AnnotationProperty GO:0010687 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090466 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071147 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902470 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045941 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042107 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045409 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044755 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022814 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044810 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006332 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009680 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018176 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015788 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016974 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033817 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072622 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042916 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046698 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_chembl biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl ChEMBL protein targets summary owl:AnnotationProperty GO:0032519 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045531 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031186 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050327 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901243 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000667 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004811 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051533 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048113 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051532 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_aspergillus biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Aspergillus GO slim owl:AnnotationProperty NCBITaxon:9443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0008646 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030407 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000508 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008729 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043072 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033205 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072543 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071956 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061636 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901042 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048234 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003890 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098707 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004094 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016693 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018918 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002741 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006834 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0085028 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_yeast biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Yeast GO slim owl:AnnotationProperty GO:0042524 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:6656 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0072455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016000 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072612 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905078 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044446 biolink:NamedThing obsolete intracellular organelle part OBSOLETE. A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0043229 True cellular_component owl:Class GO:0018380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031794 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051833 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016978 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032861 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044705 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045502 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017091 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043118 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052292 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052109 biolink:NamedThing obsolete induction by symbiont of defense-related host cell wall callose deposition OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the deposition of callose by the host in its cell walls, occurring as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of defense-related host callose deposition|up-regulation by symbiont of defense-related host cell wall callose deposition|positive regulation by symbiont of defense-related host cell wall callose deposition|activation by symbiont of defense-related host cell wall callose deposition|upregulation by symbiont of defense-related host cell wall callose deposition|positive regulation by organism of defense-related callose deposition in other organism involved in symbiotic interaction|positive regulation by organism of defense-related cell wall callose deposition in other organism involved in symbiotic interaction|stimulation by symbiont of defense-related host cell wall callose deposition|up regulation by symbiont of defense-related host cell wall callose deposition This term was obsoleted because it is a host, not a symbiont process, but was formulated as a symbiont process. True GO:0052291|GO:0052107|GO:0052292 biological_process owl:Class GO:0007184 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004093 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072457 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072400 biolink:NamedThing obsolete detection of stimulus involved in mitotic DNA integrity checkpoint OBSOLETE. The series of events in which information about DNA integrity is received and converted into a molecular signal, contributing to a mitotic DNA integrity checkpoint. tmpzr1t_l9r_go_relaxed.owl DNA integrity checkpoint sensor mechanism|detection of stimulus involved in mitotic G2/M transition decatenation checkpoint|DNA integrity checkpoint sensor process|sensing involved in DNA integrity checkpoint|mitotic G2/M transition decatenation checkpoint sensor mechanism|sensing involved in mitotic G2/M transition decatenation checkpoint|mitotic G2/M transition decatenation checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T03:29:11Z True GO:0072457 biological_process owl:Class GO:0045376 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043081 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4896 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0005578 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010300 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001668 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_agr biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl AGR slim owl:AnnotationProperty GO:0002642 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052296 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052157 biolink:NamedThing obsolete modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response OBSOLETE. Any process that involves recognition of a microbe-associated molecular pattern, and by which a symbiont modulates the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of pathogen-associated molecular pattern-induced host innate immunity|modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity|modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction https://github.com/geneontology/go-ontology/issues/18808 The reason for obsoletion is that this term has been misused. True GO:0052296 biological_process owl:Class GO:0009043 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050475 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016949 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048154 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001127 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004678 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031183 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043351 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902861 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075706 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050711 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032846 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042502 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008383 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016547 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048418 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000397 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032514 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006394 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048051 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045530 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008599 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035068 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005084 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005644 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042232 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000356 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001610 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032842 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018994 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005325 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016599 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044783 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015071 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043206 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050718 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045073 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051376 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_flybase_ribbon biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl FlyBase Drosophila GO ribbon slim owl:AnnotationProperty OIO:SubsetProperty biolink:NamedThing subset_property tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0019421 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009430 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051829 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044410 biolink:NamedThing obsolete entry into host through natural portals OBSOLETE. Penetration by a symbiont into a host organism via naturally occurring openings in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl entry into other organism through natural portals involved in symbiotic interaction|entry into other organism through natural portals during symbiotic interaction This is an unnecessary grouping term. True GO:0051829 biological_process owl:Class GO:0007025 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052555 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035030 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019733 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001645 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015569 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900479 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045389 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031194 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_pombe biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Fission yeast GO slim owl:AnnotationProperty GO:0020034 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048220 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098612 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045432 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046954 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042223 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4890 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0052099 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043026 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005636 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016957 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007013 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051277 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017048 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004975 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016425 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048474 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042233 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006737 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071856 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050726 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0120081 biolink:NamedThing obsolete positive regulation of microfilament motor activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl activation of actin-dependent ATPase activity|positive regulation of actin-filament motor activity|positive regulation of actin-activated ATPase activity|upregulation of actin-dependent ATPase activity|activation of actin-activated ATPase activity|positive regulation of muscle motor activity|positive regulation of actin filament motor activity|positive regulation of myosin ATPase activity|positive regulation of actin-dependent ATPase activity https://github.com/geneontology/go-ontology/issues/20877|https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140660 krc 2017-07-05T21:48:56Z True GO:1904623 biological_process owl:Class GO:0003748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044112 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001143 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990292 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051314 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016961 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004785 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052260 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047340 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003736 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:goslim_mouse biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Mouse GO slim owl:AnnotationProperty GO:0072648 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006908 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032857 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015198 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005069 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019952 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099132 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000499 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071804 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:5782 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0001204 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071777 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045385 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002641 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032320 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061018 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043735 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075060 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015270 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042525 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008577 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015595 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044115 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008698 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016548 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900042 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009818 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030362 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019851 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018696 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075129 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090099 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010163 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046763 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051487 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016786 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072412 biolink:NamedThing obsolete detection of stimulus involved in mitotic cell cycle checkpoint OBSOLETE. The series of events in which information about a biological process or quality is received and converted into a molecular signal, contributing to a mitotic cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle G1/S checkpoint sensor mechanism|sensing involved in mitotic cell cycle G1/S checkpoint|detection of stimulus involved in mitotic cell cycle G1/S checkpoint|mitotic cell cycle checkpoint sensor mechanism|mitotic cell cycle checkpoint sensor process|mitotic cell cycle G1/S checkpoint sensor process|sensing involved in mitotic cell cycle checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T03:48:57Z True GO:0072472|GO:0072454 biological_process owl:Class GO:0015354 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098805 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036329 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008151 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039591 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008896 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018383 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052433 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001102 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045363 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016588 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072473 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045946 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046764 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032569 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032520 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045556 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:3176 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0072616 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016193 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902096 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072603 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150132 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071776 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000134 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043360 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004116 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902303 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0120018 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001215 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018917 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045085 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043689 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001611 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044822 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070869 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072446 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046616 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010861 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008778 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902504 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017132 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901688 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031575 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048131 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042570 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015273 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015781 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904207 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061500 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4932 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0045411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0085031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006444 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035084 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102316 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044457 biolink:NamedThing obsolete cell septum part OBSOLETE. Any constituent part of a cell septum, a structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0030428 True cellular_component owl:Class GO:0052253 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008325 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004695 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006736 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052565 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052297 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060881 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052272 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030475 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009814 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051772 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060564 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001212 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001612 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003761 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003754 biolink:NamedThing obsolete chaperone activity OBSOLETE. Assists in the correct non-covalent assembly of polypeptide-containing structures in vivo, but is not a component of these assembled structures when they are performing their normal biological function. tmpzr1t_l9r_go_relaxed.owl chaperone activity This term was made obsolete because, as defined, it represents a class of gene products rather than a molecular function. The term string is also ambiguous, having connotations of involvement in transport processes. GO:0006457|GO:0051082|GO:0044183 True GO:0003758|GO:0003757|GO:0003761|GO:0003760 molecular_function owl:Class GO:0010261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009993 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001901 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052936 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990421 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0065006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002245 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044767 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051809 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000501 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052294 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042112 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033680 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031677 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072642 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072610 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042517 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010963 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045076 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042917 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001624 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004562 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052107 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:2 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0070364 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045364 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140079 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044461 biolink:NamedThing obsolete bacterial-type flagellum part OBSOLETE. Any constituent part of the bacterial-type flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by a transmembrane ion potential, typically a proton or sodium potential. tmpzr1t_l9r_go_relaxed.owl flagellin-based flagellum part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0009288 True cellular_component owl:Class GO:0010010 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008244 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016066 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030376 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000928 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045878 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043092 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015682 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001020 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032583 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032134 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007177 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0051807 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016439 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052273 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030676 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030480 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052300 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000980 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045527 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052275 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:systematic_synonym biolink:NamedThing Systematic synonym tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty OIO:SynonymTypeProperty biolink:NamedThing synonym_type_property tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0019004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009054 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000997 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046781 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008101 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902741 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003703 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045555 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044744 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019968 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000360 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072620 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000065 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044661 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072519 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080039 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034989 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043089 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004296 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010577 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150131 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008578 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042519 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007061 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018797 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042527 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019052 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015497 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031046 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043492 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016930 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:147554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0015992 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016991 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043869 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031791 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035414 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072447 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018018 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051773 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006159 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048547 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015907 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005299 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042506 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035972 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052263 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052550 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042384 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007408 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030918 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030722 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071843 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031373 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003770 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043241 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045367 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006320 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016932 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006095 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150170 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008491 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007092 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044811 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051708 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051813 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902591 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048470 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000163 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102026 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017112 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043389 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045810 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006645 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042528 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006745 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061039 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007514 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045426 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048558 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015542 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044243 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042569 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004220 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003891 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042095 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044746 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045406 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045410 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102908 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048423 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0040023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061490 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018999 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046743 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044454 biolink:NamedThing obsolete nuclear chromosome part OBSOLETE. Any constituent part of a nuclear chromosome, a chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0000228 True cellular_component owl:Class GO:0004280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010993 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032503 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016350 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071974 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048747 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031971 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016431 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070362 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045539 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097617 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010802 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003826 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103051 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010740 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902825 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072323 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032779 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003758 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048187 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003771 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036442 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030306 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080063 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001036 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005973 biolink:NamedThing obsolete fibrinogen beta chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl fibrinogen beta chain This term was made obsolete because it represents a single gene product and not a complex. GO:0005577 True GO:0008006 cellular_component owl:Class GO:0043298 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902094 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002392 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004841 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045083 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902479 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031007 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990367 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048116 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000013 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000008 biolink:NamedThing obsolete thioredoxin OBSOLETE. A small disulfide-containing redox protein that serves as a general protein disulfide oxidoreductase. Interacts with a broad range of proteins by a redox mechanism, based on the reversible oxidation of 2 cysteine thiol groups to a disulfide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulfide and a dithiol. tmpzr1t_l9r_go_relaxed.owl thioredoxin This term was made obsolete because it represents gene products. GO:0015036|GO:0003756 True GO:0000013 molecular_function owl:Class GO:0072644 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016686 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045074 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016948 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070970 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004761 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005620 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048603 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015555 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050703 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030702 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031292 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036229 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052567 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015222 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071151 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:28009 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0043019 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001048 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048177 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:Union_0000023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0001224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031793 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032893 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046953 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901677 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060356 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016522 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030764 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048043 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090702 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048416 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:2157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0016609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000941 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008669 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001038 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001004 biolink:NamedThing obsolete RNA polymerase III transcription regulator recruiting activity OBSOLETE. Initiating the assembly of the RNA polymerase III pre-initiation complex by binding to a control sequence in the intragenic region. This allows to recruit TFIIIB to the DNA at a site centered approximately 26 base pairs upstream of the start site of transcription. For tRNA genes, TFIIIC first associates with DNA, and then recruits TFIIIB. For 5S rRNA genes, TFIIIA binds to DNA first, followed by TFIIIC, which then recruits TFIIIB. tmpzr1t_l9r_go_relaxed.owl transcription factor activity, RNA polymerase III type 3 promoter TFIIIB recruiting|transcription factor activity, RNA polymerase III type 1 promoter sequence-specific binding, TFIIIB recruiting|RNA polymerase III type 3 promoter TFIIIB recruiting transcription factor activity|RNA polymerase III promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity|TFIIIA activity|type 3 RNA polymerase III promoter recognition|RNA polymerase III hybrid type promoter TFIIIB recruiting transcription factor activity|RNA polymerase III assembly factor activity, TFIIIB recruiting|transcription factor activity, RNA polymerase III type 1 promoter TFIIIB|transcription factor activity, RNA polymerase III promoter sequence-specific binding, TFIIIB recruiting|RNA polymerase III assembly factor activity|type 2 RNA polymerase III promoter recognition|TFIIIC-type activity|transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting|RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity|RNA polymerase III transcription factor recruiting activity|SNAPc-type activity|RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity https://github.com/geneontology/go-ontology/issues/14852|https://github.com/geneontology/go-ontology/issues/18561 The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'. krc 2010-08-18T05:53:32Z True GO:0001033|GO:0001038|GO:0001005|GO:0001157|GO:0001008 molecular_function owl:Class GO:0150171 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032568 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902402 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016179 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042504 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015242 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044401 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902826 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016214 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015458 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007335 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901139 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0085027 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000251 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016952 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000734 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042493 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061020 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018093 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045673 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035690 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043148 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044757 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042485 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048118 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043070 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031512 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006899 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006994 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005679 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016585 biolink:NamedThing obsolete chromatin remodeling complex OBSOLETE. Any complex that mediates dynamic changes in eukaryotic chromatin. tmpzr1t_l9r_go_relaxed.owl chromatin remodelling complex|nucleosome remodeling complex|chromatin remodeling complex This term was made obsolete because its definition no longer reflects and cannot be modified to be consistent with the current state of knowledge. GO:0006338 True GO:0005679 cellular_component owl:Class GO:0031075 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045153 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034747 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052070 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006819 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001620 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080055 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990903 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098667 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006092 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000496 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001180 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097483 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035057 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023013 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:554915 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0005293 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000383 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0106287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044246 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:50557 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0051576 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036144 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072395 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031199 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001747 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007148 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016190 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902506 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046788 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072512 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008524 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039538 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015365 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030396 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046795 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032575 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004804 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031909 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048119 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051706 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051704 biolink:NamedThing obsolete multi-organism process OBSOLETE. A biological process which involves another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl physiological interaction between organisms|physiological interaction with other organism|interaction between organisms https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because it was not a biologically meaningful grouping class. True GO:0051706 biological_process owl:Class GO:0001157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052932 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905185 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018055 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901912 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006944 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090530 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003888 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080137 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905076 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018236 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000167 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042936 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052307 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010655 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055027 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009564 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048425 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008054 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099133 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001719 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006831 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001135 biolink:NamedThing obsolete RNA polymerase II transcription regulator recruiting activity OBSOLETE. The function of binding to an RNA polymerase II (RNAP II) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation. tmpzr1t_l9r_go_relaxed.owl TFIIE-class transcription factor recruiting transcription factor activity|transcription factor activity, TFIIF-class transcription factor recruiting|TFIIH-class transcription factor recruiting transcription factor activity|RNA polymerase II transcription factor recruiting transcription factor activity|RNA polymerase II transcription factor recruiting activity|transcription factor activity, TFIIE-class transcription factor recruiting|transcription factor activity, TFIIH-class transcription factor recruiting|transcription factor activity, RNA polymerase II transcription factor recruiting|TFIIF-class transcription factor recruiting transcription factor activity https://github.com/geneontology/go-ontology/issues/15795|https://github.com/geneontology/go-ontology/issues/18561 GO:0003712 The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'. krc 2011-01-20T05:13:12Z True GO:0001138|GO:0001137|GO:0001136 molecular_function owl:Class GO:0010502 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044463 biolink:NamedThing obsolete cell projection part OBSOLETE. Any constituent part of a cell projection, a prolongation or process extending from a cell, e.g. a flagellum or axon. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0042995 True cellular_component owl:Class GO:0097458 biolink:NamedThing obsolete neuron part OBSOLETE. Any constituent part of a neuron, the basic cellular unit of nervous tissue. A typical neuron consists of a cell body (often called the soma), an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. tmpzr1t_l9r_go_relaxed.owl CL:0000540 pr 2012-12-19T16:53:50Z True cellular_component owl:Class NCBITaxon:4930 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:2000505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005807 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042111 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030236 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042512 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072556 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061839 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052445 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905950 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097406 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036079 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030871 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097425 biolink:NamedThing obsolete smooth endoplasmic reticulum part OBSOLETE. Any constituent part of the smooth endoplasmic reticulum (also called smooth ER, or SER). tmpzr1t_l9r_go_relaxed.owl SER subcomponent NIF_Subcellular:sao184202831 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005790 pr 2012-11-07T13:45:14Z True cellular_component owl:Class GO:0001021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052303 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:4891 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0043350 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043986 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016983 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060733 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009857 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007511 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045081 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047987 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042530 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019201 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016687 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018932 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903717 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034913 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016982 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031185 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018735 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043753 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097319 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006866 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150154 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900475 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016292 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008555 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016337 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034636 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001206 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005101 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006976 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030675 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990106 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042089 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036330 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007102 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030471 biolink:NamedThing obsolete spindle pole body and microtubule cycle (sensu Fungi) OBSOLETE. The dynamics of the spindle pole body and microtubule cytoskeleton during the cell cycle. Includes spindle pole body duplication and separation and formation and elongation of the mitotic spindle. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751). tmpzr1t_l9r_go_relaxed.owl spindle pole body and microtubule cycle (sensu Fungi)|spindle pole body and microtubule cycle (sensu Saccharomyces) This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful entity. GO:0007051|GO:0051300 True GO:0007102 biological_process owl:Class GO:0000392 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016955 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042511 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075127 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051836 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052298 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045373 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003744 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008561 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902264 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990373 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042877 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000946 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072568 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902714 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009540 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003996 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050704 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001593 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990337 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005498 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019944 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044765 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046766 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017155 biolink:NamedThing obsolete sodium:hydrogen antiporter regulator activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl sodium:hydrogen antiporter regulator activity|sodium:proton antiporter regulator This term was made obsolete because it represents a biological process. True GO:0030040 molecular_function owl:Class GO:0015635 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990759 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015581 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0020017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019188 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016904 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022817 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052493 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006841 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075058 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015397 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018056 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005336 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052000 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016549 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033676 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047314 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022844 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001131 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090450 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042522 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072602 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008003 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046913 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045419 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048114 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044502 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042460 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031184 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004880 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902740 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030344 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0120024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902538 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902095 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004926 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008522 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072608 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008136 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904622 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0120080 biolink:NamedThing obsolete negative regulation of microfilament motor activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl down regulation of actin-dependent ATPase activity|inhibition of actin-activated ATPase activity|down regulation of actin-activated ATPase activity|negative regulation of actin-dependent ATPase activity|negative regulation of myosin ATPase activity|inhibition of actin-dependent ATPase activity|negative regulation of actin filament motor activity|negative regulation of actin-filament motor activity|negative regulation of muscle motor activity|negative regulation of actin-activated ATPase activity https://github.com/geneontology/go-ontology/issues/20877|https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140661 krc 2017-07-05T21:36:47Z True GO:1904622 biological_process owl:Class GO:0071435 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070890 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0020021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016225 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001219 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031980 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045412 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004091 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055134 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044240 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003764 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003698 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090631 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015622 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044438 biolink:NamedThing obsolete microbody part OBSOLETE. Any constituent part of a microbody, a cytoplasmic organelle, spherical or oval in shape, that is bounded by a single membrane and contains oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0042579 True cellular_component owl:Class GO:0016770 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036439 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032863 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048436 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031212 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045078 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903757 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034401 biolink:NamedThing obsolete chromatin organization involved in regulation of transcription OBSOLETE. Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter, global by histone modification|activation of global transcription from RNA polymerase II promoter by histone modification|up-regulation of transcription from RNA polymerase II promoter by histone modification|establishment or maintenance of chromatin architecture during transcription|positive regulation of transcription from RNA polymerase II promoter, global by histone modification|regulation of transcription by chromatin organization|positive regulation of transcription from Pol II promoter by histone modification|activation of transcription from RNA polymerase II promoter by histone modification|stimulation of global transcription from RNA polymerase II promoter by histone modification|stimulation of transcription from RNA polymerase II promoter by histone modification|up regulation of transcription from RNA polymerase II promoter by histone modification|up regulation of global transcription from RNA polymerase II promoter by histone modification|regulation of global transcription from Pol II promoter by histone modification|positive regulation of gene-specific transcription from RNA polymerase II promoter by histone modification|positive regulation of transcription from RNA polymerase II promoter by histone modification|positive regulation of global transcription from Pol II promoter by histone modification|regulation of gene-specific transcription from RNA polymerase II promoter by histone modification|regulation of transcription from Pol II promoter by histone modification|upregulation of transcription from RNA polymerase II promoter by histone modification|upregulation of global transcription from RNA polymerase II promoter by histone modification|regulation of transcription from RNA polymerase II promoter by histone modification|up-regulation of global transcription from RNA polymerase II promoter by histone modification|regulation of transcription by chromatin organisation https://github.com/geneontology/go-ontology/issues/22041 This term was obsoleted because these it was redundant with other terms: heterochromatin assembly and regulation of gene expression, epigenetic. rl 2014-12-18T14:56:16Z True GO:1903756|GO:1903757 biological_process owl:Class GO:0015037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043391 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050720 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018384 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008562 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075295 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007328 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004580 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006917 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042155 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004942 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072624 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052539 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052105 biolink:NamedThing obsolete induction by symbiont of defense-related host cell wall thickening OBSOLETE. The activation by an organism of host processes resulting in the thickening of its cell walls, occurring as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of defense-related host cell wall thickening|stimulation by symbiont of defense-related host cell wall thickening|up regulation by symbiont of defense-related host cell wall thickening|activation by symbiont of defense-related host cell wall thickening|activation by organism of host defensive cell wall thickening|positive regulation by organism of defense-related cell wall thickening in other organism involved in symbiotic interaction|upregulation by symbiont of defense-related host cell wall thickening|positive regulation by organism of host defensive cell wall thickening|induction by organism of host defensive cell wall thickening|induction by organism of defense-related cell wall thickening in other organism involved in symbiotic interaction|up-regulation by symbiont of defense-related host cell wall thickening|activation by organism of defense-related host cell wall thickening This term was obsoleted because it is a host, not a symbiont process, but was formulated as a symbiont process. True GO:0052538|GO:0052290|GO:0052539 biological_process owl:Class NCBITaxon:241407 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0044442 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044441 biolink:NamedThing obsolete ciliary part OBSOLETE. Any constituent part of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole. tmpzr1t_l9r_go_relaxed.owl cilium part|flagellum part|cilial part|flagellum component|flagellar part|microtubule-based flagellum part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. Also note that cilia and eukaryotic flagella are deemed to be equivalent. GO:0005929 True GO:0044442 cellular_component owl:Class GO:0005486 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090198 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017068 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902715 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052518 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016766 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009776 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046955 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018986 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010551 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042977 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051530 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015241 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042035 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023015 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048218 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042154 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002379 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051810 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052376 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030065 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042687 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000391 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016293 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042229 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000929 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102016 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044424 biolink:NamedThing obsolete intracellular part OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005622 True cellular_component owl:Class GO:0018931 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019195 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016452 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044437 biolink:NamedThing obsolete vacuolar part OBSOLETE. Any constituent part of a vacuole, a closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. tmpzr1t_l9r_go_relaxed.owl vacuole component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005773 True cellular_component owl:Class GO:0071436 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044430 biolink:NamedThing obsolete cytoskeletal part OBSOLETE. Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice. tmpzr1t_l9r_go_relaxed.owl cytoskeleton component|cytoskeletal element NIF_Subcellular:sao1635329413 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005856 True cellular_component owl:Class GO:0004759 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001148 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008969 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043340 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032858 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009391 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:451866 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0008844 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045383 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0021733 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052549 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008007 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005974 biolink:NamedThing obsolete fibrinogen gamma chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl fibrinogen gamma chain This term was made obsolete because it represents a single gene product and not a complex. GO:0005577 True GO:0008007 cellular_component owl:Class GO:0033035 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016315 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035586 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019642 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046767 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043187 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051820 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003927 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032319 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001902 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016954 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036327 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052501 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008596 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052441 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010806 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046801 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001105 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030028 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006916 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004762 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001043 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045080 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004101 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048594 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008799 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008722 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015206 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015065 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052290 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004330 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006871 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048590 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045525 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904168 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042831 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005089 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001158 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006263 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015320 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048435 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050753 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048410 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090662 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042091 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072630 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010627 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902765 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051207 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004886 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047210 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002743 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050722 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052161 biolink:NamedThing obsolete modulation by symbiont of defense-related host cell wall thickening OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of host processes resulting in the thickening of its cell walls, occurring as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of host defensive cell wall thickening|modulation by organism of defense-related cell wall thickening in other organism involved in symbiotic interaction This term was obsoleted because it is a host, not a symbiont process, but was formulated as a symbiont process. True GO:0052300 biological_process owl:Class GO:2000072 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016478 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015268 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045416 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015656 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990821 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005970 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003894 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009816 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019984 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042002 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050755 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990939 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048637 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072465 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090645 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0014026 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032521 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045414 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903263 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090569 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000057 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031239 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0062178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990118 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002073 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000069 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052532 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:chebi_ph7_3 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl Rhea list of ChEBI terms representing the major species at pH 7.3. owl:AnnotationProperty GO:0046742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015281 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016928 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033682 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052538 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090002 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000498 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000924 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072615 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090458 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051242 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001908 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031792 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008644 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072654 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045532 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000926 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008095 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045384 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046837 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016820 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045447 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043341 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000063 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030608 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044714 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051825 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075717 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044234 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052306 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044254 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046750 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048155 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045401 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009775 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009241 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048551 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016960 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015511 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036231 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052030 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005716 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018843 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033955 biolink:NamedThing obsolete mitochondrial DNA inheritance OBSOLETE. The process in which copies of the mitochondrial genome are distributed into daughter mitochondria upon mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl mitochondrial chromosome segregation|mitochondrial DNA segregation https://github.com/geneontology/go-ontology/issues/18417 This term was obsoleted because it represented a phenotype. GO:0000266|GO:0000002 True GO:0090142 biological_process owl:Class GO:0045388 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004870 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072425 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016745 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033297 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019167 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019986 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050576 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032522 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048059 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902067 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000666 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043016 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052278 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902187 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045394 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023016 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015610 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001136 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001202 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006442 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000664 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072611 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042143 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043439 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035549 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900401 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905419 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010175 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000058 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048862 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051910 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004884 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030928 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048412 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003695 biolink:NamedThing obsolete random coil DNA binding OBSOLETE. Binding to DNA in a random coil configuration. tmpzr1t_l9r_go_relaxed.owl random coil binding https://github.com/geneontology/go-ontology/issues/18879 This term was obsoleted because the definition was not clear enough as to what is directing specificity of the binding to the DNA. True GO:0016017 molecular_function owl:Class GO:0102260 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005904 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048602 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050880 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031187 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000042 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050827 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051426 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903275 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903718 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007067 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016450 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051025 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071143 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071884 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033109 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019754 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060871 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015329 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047076 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006872 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009586 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016089 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904469 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001644 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048271 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051868 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033725 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009878 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048414 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045397 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003760 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902593 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044455 biolink:NamedThing obsolete mitochondrial membrane part OBSOLETE. Any constituent part of a mitochondrial membrane, either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0031966 True cellular_component owl:Class GO:0019967 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990614 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072601 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015290 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990307 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006445 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015502 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035104 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009405 biolink:NamedThing obsolete pathogenesis OBSOLETE. The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism. tmpzr1t_l9r_go_relaxed.owl virulence https://github.com/geneontology/go-ontology/issues/11057 This term was obsoleted because it does not describe a single, normal biological process; rather it is the effect of an interaction between two organisms, under specific conditions. GO:0044003|GO:0052031|GO:0052042 True biological_process owl:Class GO:0042109 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005386 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900173 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902478 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019965 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901134 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001035 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901476 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990945 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048426 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905659 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103115 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045553 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048428 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044086 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044259 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048591 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008680 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003907 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004944 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007104 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048419 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043205 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015852 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042257 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006342 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001585 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042225 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008708 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016424 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007082 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070010 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004899 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000081 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051244 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009281 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034619 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019581 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018385 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140564 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006519 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035547 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000507 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044055 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045845 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030571 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0089711 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018514 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042227 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901690 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004003 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075501 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008647 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001144 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045001 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052268 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008629 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033733 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150149 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046732 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901603 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099131 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032894 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102315 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046768 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902578 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030333 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008099 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042514 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045082 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051837 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:3398 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0007467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015239 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042521 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990925 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005341 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097689 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048096 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002640 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032844 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045362 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019734 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016228 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000942 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017073 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902837 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050719 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043437 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001180 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052250 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060247 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045377 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042553 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001203 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072437 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099603 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042787 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015672 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051828 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034962 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902377 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044802 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001220 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048230 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044797 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015809 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016924 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019127 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008338 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150194 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016976 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006759 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072614 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045868 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061164 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072516 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033170 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052251 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003897 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071841 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060248 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102078 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019225 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008249 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008072 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030025 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046971 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052179 biolink:NamedThing obsolete metabolism by symbiont of host cell wall pectin OBSOLETE. The chemical reactions and pathways performed by an organism involving pectin in the cell wall of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of cell wall pectin in other organism involved in symbiotic interaction This term was obsoleted because it represents a molecular function. True GO:0052413 biological_process owl:Class GO:0019565 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042241 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001679 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009572 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052267 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048409 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015618 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016777 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098668 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061494 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015463 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905658 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098738 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044376 biolink:NamedThing obsolete RNA polymerase II complex import to nucleus OBSOLETE. The directed movement of the DNA-directed RNA polymerase II core complex from the cytoplasm into the nucleus. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II complex localisation to nucleus|RNA polymerase II complex import into nucleus|DNA-directed RNA polymerase II core complex localization to nucleus|DNA-directed RNA polymerase II core complex import into nucleus The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 jl 2011-12-01T04:43:03Z True GO:0098738 biological_process owl:Class GO:0005103 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990293 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000046 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150160 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048433 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016001 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005913 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003737 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035638 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015580 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000986 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015585 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042871 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005331 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042516 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008916 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045398 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017152 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030039 biolink:NamedThing obsolete DNA unwinding factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA unwinding factor GO:0006268 This term was made obsolete because it does not represent a true molecular function. True GO:0017152 molecular_function owl:Class GO:0038042 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990766 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044464 biolink:NamedThing obsolete cell part OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. tmpzr1t_l9r_go_relaxed.owl cellular subcomponent|protoplast NIF_Subcellular:sao628508602 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. CL:0000000 True cellular_component owl:Class GO:0052056 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052564 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015906 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019193 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075327 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015664 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048186 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052060 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903756 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001599 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904208 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052281 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102567 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005961 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019721 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043832 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070924 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045731 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046489 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030615 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000780 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071992 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018841 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017016 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018691 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061747 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052284 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072617 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019735 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006818 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090544 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018476 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150169 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072471 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052071 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001638 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001633 biolink:NamedThing obsolete secretin-like receptor activity OBSOLETE. A G protein-coupled receptor that is structurally/functionally related to the secretin receptor. tmpzr1t_l9r_go_relaxed.owl secretin-like receptor activity|class B G-protein coupled receptor|class B G protein coupled receptor|class B GPCR|class B orphan receptor activity This term was made obsolete because it represents a gene product and is named based on protein features. True GO:0001638 molecular_function owl:Class GO:0045846 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019190 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035058 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072433 biolink:NamedThing obsolete detection of DNA damage stimulus involved in mitotic G2 DNA damage checkpoint OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to a mitotic G2/M transition DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic G2/M transition DNA damage checkpoint sensor mechanism|detection of DNA damage stimulus involved in G2/M transition DNA damage checkpoint|mitotic G2/M transition DNA damage checkpoint sensor process|detection of DNA damage stimulus involved in mitotic G2/M transition DNA damage checkpoint|sensing involved in G2/M transition DNA damage checkpoint|detection of DNA damage stimulus involved in G2 DNA damage checkpoint|G2/M transition DNA damage checkpoint sensor mechanism|sensing involved in mitotic G2/M transition DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:43:14Z True GO:0072424 biological_process owl:Class GO:0000168 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048112 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018842 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008590 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038052 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008264 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000043 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016451 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042055 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052265 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090197 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103052 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046747 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030914 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071845 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005487 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043222 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016294 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009599 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045079 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075517 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006381 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015384 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044436 biolink:NamedThing obsolete thylakoid part OBSOLETE. Any constituent part of a thylakoid, a sac-like vesicle that bears the photosynthetic pigments in photosynthetic organisms. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0009579 True cellular_component owl:Class GO:0019949 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990774 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005855 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004907 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016291 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031195 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044708 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000068 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051183 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903308 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008857 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015508 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072652 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002217 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001151 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019913 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072646 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030260 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052082 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000396 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052311 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052202 biolink:NamedThing obsolete negative regulation by symbiont of defense-related host cell wall callose deposition OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the deposition of callose by the host in its cell walls, occurring as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of defense-related host cell wall callose deposition|down-regulation by symbiont of defense-related host cell wall callose deposition|negative regulation by organism of defense-related callose deposition in other organism involved in symbiotic interaction|negative regulation by organism of defense-related cell wall callose deposition in other organism involved in symbiotic interaction|downregulation by symbiont of defense-related host cell wall callose deposition|negative regulation by symbiont of defense-related host callose deposition|inhibition by symbiont of defense-related host cell wall callose deposition This term was obsoleted because it is a host, not a symbiont process, but was formulated as a symbiont process. True GO:0052311|GO:0052087|GO:0052282 biological_process owl:Class GO:0097404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043191 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071148 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000490 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045441 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003757 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072638 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072406 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032947 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043147 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048553 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042115 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008323 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017137 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052533 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034960 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099114 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008560 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046796 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000071 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045908 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015845 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005661 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003892 biolink:NamedThing obsolete proliferating cell nuclear antigen OBSOLETE. A nuclear protein that associates as a trimer and then interacts with delta DNA polymerase and epsilon DNA polymerase, acting as an auxiliary factor for DNA replication and DNA repair. tmpzr1t_l9r_go_relaxed.owl proliferating cell nuclear antigen|PCNA This term was made obsolete because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True GO:0005661 molecular_function owl:Class GO:0044711 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038051 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000816 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072401 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004684 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051805 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042518 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000189 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043787 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006938 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039676 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042515 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000365 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035734 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016489 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009520 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052271 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052264 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015758 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035258 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042828 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015785 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015584 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043284 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035056 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008827 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005232 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001030 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075057 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001202 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003768 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003767 biolink:NamedThing obsolete co-chaperone activity OBSOLETE. Co-chaperones are proteins that bind to chaperones and this complex then folds misfolded proteins. Co-chaperones by themselves do not possess chaperone activity. tmpzr1t_l9r_go_relaxed.owl co-chaperone activity This term was made obsolete because it represents a class of gene products rather than a molecular function. GO:0051087|GO:0044183|GO:0006457 True GO:0003769|GO:0003771|GO:0003768|GO:0003770 molecular_function owl:Class GO:0031675 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015162 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046769 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005959 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005329 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098701 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097521 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001218 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016219 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032856 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006492 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001187 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015579 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018840 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008221 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018354 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010000 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004891 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006822 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903458 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072428 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045371 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034100 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022892 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016619 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005312 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016908 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061601 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052255 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0012504 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042346 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003705 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006215 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060246 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072661 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006485 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032862 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052309 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001201 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048117 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002928 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005671 biolink:NamedThing obsolete Ada2/Gcn5/Ada3 transcription activator complex OBSOLETE. A multiprotein complex that possesses histone acetyltransferase and is involved in regulation of transcription. Contains either GCN5 or PCAF in a mutually exclusive manner. The budding yeast complex includes Gcn5p, two proteins of the Ada family, and two TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. Both ATAC- or SAGA (see GO:0000124, SAGA complex) are involved in the acetylation of histone H3K9 and K14 residues. tmpzr1t_l9r_go_relaxed.owl ATAC complex https://github.com/geneontology/go-ontology/issues/21335 This term was obsoleted because it was incorrectly annotated. Consider ADA complex ; GO:0140671 or ATAC complex; GO:0140672. GO:0140672|GO:0140671 True GO:0002928 cellular_component owl:Class GO:0035055 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019925 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072569 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000173 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050717 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902149 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061495 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018709 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043193 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008862 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000129 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032850 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044367 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052248 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000982 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019014 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901689 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043091 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031189 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:33083 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0071790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044263 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055133 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003740 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045365 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032312 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900920 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044452 biolink:NamedThing obsolete nucleolar part OBSOLETE. Any constituent part of a nucleolus, a small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. tmpzr1t_l9r_go_relaxed.owl nucleolus component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005730 True cellular_component owl:Class GO:0048231 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035786 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006331 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006330 biolink:NamedThing obsolete single-stranded DNA binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl single-stranded DNA binding GO:0003697 This term was made obsolete because it represents a molecular function and not a biological process. True GO:0006332|GO:0006331 biological_process owl:Class GO:0061745 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008958 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017019 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030102 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004010 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035086 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902968 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098546 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044445 biolink:NamedThing obsolete cytosolic part OBSOLETE. Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components. tmpzr1t_l9r_go_relaxed.owl cytosol component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005829 True cellular_component owl:Class GO:0050713 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009596 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072511 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005333 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006966 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007452 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900174 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905963 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015999 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043764 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015646 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001008 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016253 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075518 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015684 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052101 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016224 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019753 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005772 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051808 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901473 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071862 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070882 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017100 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015688 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006861 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102568 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045425 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005843 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039515 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008433 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032852 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043775 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034961 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075143 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075141 biolink:NamedThing obsolete symbiont tolerance to host environment OBSOLETE. Any process that contributes to the maintenance of a physiologic state in which the symbiont immune system does not react destructively against the components of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl maintenance of symbiont tolerance to host oxygen tension environment|maintenance of symbiont tolerance to host redox environment|maintenance of symbiont tolerance to host iron concentration|maintenance of symbiont tolerance to host pH environment|maintenance of symbiont tolerance to host environment|maintenance of symbiont tolerance to host osmotic environment https://github.com/geneontology/go-ontology/issues/19099|https://github.com/geneontology/go-ontology/issues/18827 This term was obsoleted because it is redundant with other terms. GO:0052200 True GO:0075238|GO:0075143|GO:0075146|GO:0075144|GO:0075142 biological_process owl:Class GO:0098602 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039601 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051869 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902316 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018806 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006321 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050663 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007324 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009796 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035427 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035083 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098741 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052428 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052663 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044756 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072643 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072416 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016927 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001209 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005320 biolink:NamedThing obsolete apolipoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl apolipoprotein This term was made obsolete because it does not represent a molecular function. GO:0005319 True GO:0015907 molecular_function owl:Class GO:0016959 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018088 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006870 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007410 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061167 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990336 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030452 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034500 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043345 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045034 biolink:NamedThing obsolete neuroblast division OBSOLETE. The asymmetrical division of a neuroblast, the neural precursor in the central nervous system, giving rise to another neuroblast and a ganglion mother cell. tmpzr1t_l9r_go_relaxed.owl neuroblast division (sensu Nematoda and Protostomia)|neuroblast cell division|neuroblast division (sensu Vertebrata)|neuroblast division This term was made obsolete because the definition was incorrect. Not all neuroblasts divide asymmetrically. Neuroblasts give rise to neurons after division. True GO:0043345|GO:0043346 biological_process owl:Class GO:0006093 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903874 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903758 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052280 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008639 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150120 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008557 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016069 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043690 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043926 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044054 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071822 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042295 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017127 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032439 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048049 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042036 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016563 biolink:NamedThing obsolete transcription activator activity OBSOLETE. Any transcription regulator activity required for initiation or upregulation of transcription. tmpzr1t_l9r_go_relaxed.owl transcription activating factor|transcription activator activity|transcriptional activator activity GO:0001228 This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. True GO:0003710 molecular_function owl:Class GO:0048175 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001622 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016792 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902293 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001106 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030069 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031988 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016177 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003889 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046744 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031206 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003946 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015639 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052930 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015893 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010579 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017066 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000483 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030898 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000823 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022833 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015202 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016244 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005676 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018409 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009795 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001133 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052152 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015409 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007103 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043106 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042830 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003763 biolink:NamedThing obsolete chaperonin ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP involved in maintaining an unfolded polypeptide structure before folding or to entry into mitochondria and chloroplasts. tmpzr1t_l9r_go_relaxed.owl chaperonin|chaperonin ATPase activity GO:0016887 This term was made obsolete because it represents a class of gene products, and its definition incorporates process information. GO:0006457 True GO:0003766|GO:0003764|GO:0003765 molecular_function owl:Class GO:0042782 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044371 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008731 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004182 biolink:NamedThing obsolete carboxypeptidase A activity OBSOLETE. Catalysis of the reaction: peptidyl-L-amino acid + H2O = peptide + L-amino acid. Little or no action with -Asp, -Glu, -Arg, -Lys or -Pro. tmpzr1t_l9r_go_relaxed.owl pancreatic carboxypeptidase A|tissue carboxypeptidase A|carboxypeptidase A activity|carboxypolypeptidase activity GO:0004181 This term was made obsolete because it represents a gene product. True GO:0008731 molecular_function owl:Class GO:0045366 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019006 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019425 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009591 biolink:NamedThing obsolete perception of mechanical stimulus OBSOLETE. The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal. tmpzr1t_l9r_go_relaxed.owl perception of mechanical stimulus This term was made obsolete because it was not clear whether the term applied to the whole process of taste perception or just the sensory transduction stage. GO:0050954 True GO:0007609 biological_process owl:Class GO:0072459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048253 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044213 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045395 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016470 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031200 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:131567 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0004840 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071997 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034712 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070615 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052065 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902452 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098611 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007151 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022820 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903834 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052258 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033753 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016568 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044266 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019009 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002137 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904805 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000944 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006980 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046731 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043080 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008620 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023046 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045877 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005485 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015249 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042523 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006453 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006773 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008102 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036263 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103095 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009364 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051689 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005909 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045538 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046515 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005062 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003765 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006594 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000385 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090195 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003738 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052345 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044119 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075146 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051076 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030664 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045255 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006395 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045154 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043432 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061165 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072640 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019963 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031198 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072450 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032321 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044447 biolink:NamedThing obsolete axoneme part OBSOLETE. Any constituent part of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements. tmpzr1t_l9r_go_relaxed.owl axonemal part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. Also note that cilia and eukaryotic flagella are deemed to be equivalent. GO:0005930 True cellular_component owl:Class GO:0048272 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015246 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061994 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006764 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048422 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004700 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015402 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072641 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045392 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007255 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000984 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003728 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150113 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017173 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035085 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045402 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045207 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045206 biolink:NamedThing obsolete MAPK phosphatase transporter activity OBSOLETE. Enables the directed movement of MAPK phosphatase into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl MKP shuttle|MAPK phosphatase transporter activity|leptomycin B-sensitive MAPK phosphatase transporter activity|leptomycin B-sensitive MKP shuttle This term was made obsolete because we do not know what it was intended to represent when it was created. True GO:0045207 molecular_function owl:Class GO:0015388 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150133 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902398 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016523 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006765 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032315 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009484 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009482 biolink:NamedThing obsolete ba3-type cytochrome c oxidase OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl ba3-type cytochrome c oxidase GO:0004129 This term was made obsolete because it describes a class of gene products rather than a molecular function. True GO:0009484 molecular_function owl:Class GO:0048432 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019275 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017160 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090568 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902828 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043352 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0106311 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052276 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006010 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007327 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005306 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004188 biolink:NamedThing obsolete serine-type Pro-X carboxypeptidase activity OBSOLETE. Catalysis of the cleavage of a Pro-Xaa bond by a serine-type peptidase mechanism to release a C-terminal amino acid. tmpzr1t_l9r_go_relaxed.owl lysosomal Pro-X carboxypeptidase activity|lysosomal Pro-Xaa carboxypeptidase activity|proline-specific carboxypeptidase P|proline carboxypeptidase activity|serine-type Pro-X carboxypeptidase activity|peptidylprolylamino acid carboxypeptidase activity|PCP|lysosomal carboxypeptidase C activity|angiotensinase C activity|prolyl carboxypeptidase activity|aminoacylproline carboxypeptidase activity GO:0004185 This term was made obsolete because it represents a gene product. True GO:0008323 molecular_function owl:Class GO:0052510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050715 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001185 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004718 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019691 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033649 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042253 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042963 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044426 biolink:NamedThing obsolete cell wall part OBSOLETE. Any constituent part of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005618 True cellular_component owl:Class GO:0003124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043356 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000778 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000066 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006993 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006763 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000999 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903414 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018239 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042508 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015563 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042484 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006243 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010107 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009797 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000119 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005718 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005972 biolink:NamedThing obsolete fibrinogen alpha chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl fibrinogen alpha chain This term was made obsolete because it represents a single gene product and not a complex. GO:0005577 True GO:0008005 cellular_component owl:Class GO:0050874 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000484 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903990 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031662 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:7742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0010388 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004871 biolink:NamedThing obsolete signal transducer activity OBSOLETE. Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. tmpzr1t_l9r_go_relaxed.owl quorum sensing signal generator activity|quorum sensing response regulator activity|hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity https://github.com/geneontology/go-ontology/issues/14232 This term was obsoleted because it was not clearly defined and is not a useful grouping term. True GO:0009369|GO:0005062|GO:0009370 molecular_function owl:Class GO:0072445 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031743 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010173 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043119 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019007 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990296 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005720 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900476 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904497 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044712 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016003 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015058 biolink:NamedThing obsolete epidermal growth factor-like module containing hormone receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl EGF-like module containing hormone receptor activity|epidermal growth factor-like module containing hormone receptor activity|Egr1 hormone receptor This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True GO:0016523 molecular_function owl:Class GO:0052295 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000158 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005478 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071779 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090608 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072628 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008640 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050721 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043343 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043109 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015784 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000728 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072561 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903956 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000945 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090484 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900172 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000975 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070011 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030375 biolink:NamedThing obsolete thyroid hormone receptor coactivator activity OBSOLETE. The function of a transcription cofactor that activates transcription in conjunction with a thyroid hormone-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself. tmpzr1t_l9r_go_relaxed.owl thyroid hormone receptor co-activator activity|thyroid hormone receptor activator activity This term was obsoleted because it represented a gene product. True GO:0010861 molecular_function owl:Class GO:0000507 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001160 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016931 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002506 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048421 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015557 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019737 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050876 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044723 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:27896 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:1903989 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015873 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051852 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061488 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045909 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000106 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044798 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070838 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030231 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016542 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046652 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016967 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030503 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015321 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032845 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019053 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018869 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019850 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072636 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007333 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008243 biolink:NamedThing obsolete plasminogen activator activity OBSOLETE. Catalysis of the specific cleavage of an Arg-Val bond in plasminogen to form plasmin. tmpzr1t_l9r_go_relaxed.owl urinary esterase A|t-plasminogen activator activity|abbokinase activity|tissue-type plasminogen activator activity|u-PA|tissue plasminogen activator activity|tPA activity|plasminogen activator activity|two-chain urokinase-type plasminogen activator|cellular plasminogen activator activity|plasminogen activator, tissue-type|t-PA|urinary plasminogen activator activity|uPA|u-plasminogen activator activity|double-chain urokinase-type plasminogen activator|urokinase activity|urokinase plasminogen activator|urokinase-type plasminogen activator GO:0004252 This term was made obsolete because it represents a gene product. True GO:0004297|GO:0004296 molecular_function owl:Class GO:0042520 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903820 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004943 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031744 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009105 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017140 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042312 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090196 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035257 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043566 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050723 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007325 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017049 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044279 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032512 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007331 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902585 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000925 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904169 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048595 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017144 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001670 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031636 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070389 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055099 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050707 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005162 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004682 biolink:NamedThing obsolete protein kinase CK2 activity OBSOLETE. Catalysis of the reaction: casein + ATP = phosphocasein + ADP. tmpzr1t_l9r_go_relaxed.owl casein kinase II, catalytic activity|protein kinase CK2, intrinsic catalyst activity|protein kinase CK2 activity|casein kinase II activity GO:0004674 This term was made obsolete because it represents a gene product. True GO:0008604 molecular_function owl:Class GO:1902420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905965 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032864 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001034 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004889 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019088 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051832 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043071 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018373 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015564 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052490 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031182 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052853 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070627 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048120 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903813 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008367 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051635 biolink:NamedThing obsolete bacterial cell surface binding OBSOLETE. Binding to a component on the surface of a bacterial cell. tmpzr1t_l9r_go_relaxed.owl bacterial binding|bacterial cell surface binding|binding to bacterium|bacterium cell surface binding|bacterium binding This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. GO:0003823|GO:0042742|GO:0005102 True GO:0008367 molecular_function owl:Class GO:0035117 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016950 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006350 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042239 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045811 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072462 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035534 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003981 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015512 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061717 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010535 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030542 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072693 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048415 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008105 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052561 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043809 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150135 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903410 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001052 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class OBO:go.owl biolink:NamedThing Gene Ontology The Gene Ontology (GO) provides a framework and set of concepts for describing the functions of gene products from all organisms. tmpzr1t_l9r_go_relaxed.owl gene_ontology 1.2 http://creativecommons.org/licenses/by/4.0/ owl:Ontology 2021-11-16 OBO:go/releases/2021-11-16/go.owl biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0015659 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042591 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018092 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045788 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000799 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001104 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022891 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071158 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033669 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017115 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052059 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036328 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050756 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150112 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072626 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003898 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001943 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019951 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902453 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045215 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903802 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019063 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045573 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005653 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080174 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010532 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001194 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090479 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042094 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032054 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015027 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051531 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000983 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071842 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038050 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005857 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015831 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043344 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004036 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070683 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044763 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001521 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060626 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032854 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045355 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990975 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018223 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052282 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035548 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004976 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045817 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072018 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044707 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001013 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015028 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072418 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072397 biolink:NamedThing obsolete detection of stimulus involved in cytokinesis checkpoint OBSOLETE. The series of events in which information about the formation and integrity of cytokinetic structures, such as the contractile ring, is received and converted into a molecular signal, contributing to a cytokinesis checkpoint. tmpzr1t_l9r_go_relaxed.owl cytokinesis checkpoint sensor mechanism|cytokinesis checkpoint sensor process|septin checkpoint sensor mechanism|sensing involved in cytokinesis checkpoint|septin checkpoint sensor process|detection of stimulus involved in septin checkpoint|sensing involved in septin checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T03:18:11Z True GO:0072418 biological_process owl:Class GO:0044448 biolink:NamedThing obsolete cell cortex part OBSOLETE. Any constituent part of the cell cortex, the region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005938 True cellular_component owl:Class GO:0005453 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005932 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017034 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007152 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009387 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050791 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016685 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052277 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044153 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097459 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150161 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045528 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051471 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010531 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008182 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031196 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008183 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900921 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010386 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070750 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052289 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031190 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042266 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032855 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044252 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905657 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052291 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000985 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016953 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016096 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990152 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075056 biolink:NamedThing obsolete negative regulation of penetration peg formation OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont penetration peg formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont penetration peg formation for entry into host|negative regulation of symbiont penetration peg initiation https://github.com/geneontology/go-ontology/issues/18779 This term was obsoleted because there is no evidence that this process exists. True GO:0075060 biological_process owl:Class GO:0007233 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070363 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072083 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052293 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035546 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032066 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044244 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052852 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023014 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001903 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006902 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051527 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009774 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015637 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032518 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072625 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990345 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008339 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008223 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001205 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016958 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044704 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030179 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061637 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043706 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004647 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030524 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009613 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045391 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000441 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031618 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000695 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001693 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102353 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052329 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043234 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000662 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042678 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004959 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044356 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903887 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015082 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015338 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006365 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043342 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008665 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052551 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036232 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903273 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140160 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042230 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033057 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017036 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007373 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002744 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072634 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030482 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002386 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044700 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016736 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015683 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071991 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043239 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015197 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008602 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046770 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006947 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051824 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048111 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072431 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903835 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006961 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019291 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051297 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000482 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007001 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000351 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043762 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005099 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018692 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050430 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090041 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000787 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045407 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030113 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048115 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043074 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044421 biolink:NamedThing obsolete extracellular region part OBSOLETE. Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite. tmpzr1t_l9r_go_relaxed.owl extracellular structure NIF_Subcellular:sao9117790637 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005576 True cellular_component owl:Class GO:0015559 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052931 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044745 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:3378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0042345 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043088 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075121 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904167 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008026 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001103 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050443 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009618 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070015 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030966 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090098 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072691 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051774 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010953 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018225 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098783 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050381 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004480 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0021734 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046734 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048064 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052073 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903991 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150188 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072394 biolink:NamedThing obsolete detection of stimulus involved in cell cycle checkpoint OBSOLETE. The series of events in which information about a biological process or quality is received and converted into a molecular signal, contributing to a cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl G1/S transition checkpoint sensor process|G1/S transition checkpoint sensor mechanism|sensing involved in cell cycle checkpoint|G2/M transition checkpoint sensor process|detection of stimulus involved in G2/M transition checkpoint|sensing involved in G2/M transition checkpoint|cell cycle checkpoint sensor mechanism|detection of stimulus involved in G1/S transition checkpoint|sensing involved in G1/S transition checkpoint|cell cycle checkpoint sensor process|G2/M transition checkpoint sensor mechanism https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T02:55:56Z True GO:0072403|GO:0072406 biological_process owl:Class GO:0044285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051406 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052310 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052189 biolink:NamedThing obsolete modulation by symbiont of defense-related host cell wall callose deposition OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the deposition of callose by the host in its cell walls, occurring as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related cell wall callose deposition in other organism involved in symbiotic interaction|modulation by organism of defense-related callose deposition of other organism involved in symbiotic interaction|modulation by symbiont of defense-related host callose deposition This term was obsoleted because it is a host, not a symbiont process, but was formulated as a symbiont process. True GO:0052310|GO:0052285|GO:0052090 biological_process owl:Class GO:0045675 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035428 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015353 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990541 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071937 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015892 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072453 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009565 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009844 biolink:NamedThing obsolete germination OBSOLETE. The physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth. tmpzr1t_l9r_go_relaxed.owl germination This term was made obsolete because it is a grouping term without biological significance. True GO:0009565 biological_process owl:Class GO:0035466 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018804 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055084 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052252 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070752 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045546 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031576 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051834 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090157 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016249 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007322 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015570 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004524 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075061 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900922 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042677 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006770 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031572 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004429 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048267 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015590 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072407 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019173 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019818 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036233 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005088 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019641 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004297 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044444 biolink:NamedThing obsolete cytoplasmic part OBSOLETE. Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. tmpzr1t_l9r_go_relaxed.owl cytoplasm component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005737 True cellular_component owl:Class GO:0000074 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000927 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903310 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045256 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030013 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042222 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000218 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005830 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008642 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001214 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:40674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0043037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000665 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052186 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902431 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016220 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015632 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030525 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904804 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010553 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051812 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010805 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902304 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016800 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005218 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044440 biolink:NamedThing obsolete endosomal part OBSOLETE. Any constituent part of an endosome, a membrane-bounded organelle to which materials ingested by endocytosis are delivered. tmpzr1t_l9r_go_relaxed.owl endosome component|endosomal subcomponent NIF_Subcellular:sao1683772610 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005768 True cellular_component owl:Class GO:0035411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017167 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050489 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015084 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017138 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019924 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001225 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030387 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016968 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036281 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035389 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061460 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034984 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000663 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044531 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043925 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:147537 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0008040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990284 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044212 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052389 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005067 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003076 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045387 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047523 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046650 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004872 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903822 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052256 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030483 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010204 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019906 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022838 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072026 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042833 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044276 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000029 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008505 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017191 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043868 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150114 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071850 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051579 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001718 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900755 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006652 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051768 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005051 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051288 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048221 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008497 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904190 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000797 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005719 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006960 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903809 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007046 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043017 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030384 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045084 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030646 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019494 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075516 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052254 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045791 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016876 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008059 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016660 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035856 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001199 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006160 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047767 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001189 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140362 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050706 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045235 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018714 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003753 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003708 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042298 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005842 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061491 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034049 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990746 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003769 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006946 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015163 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004763 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042061 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008321 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009284 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034048 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030146 biolink:NamedThing obsolete diuresis OBSOLETE. The process of renal water excretion. tmpzr1t_l9r_go_relaxed.owl renal water excretion|positive regulation of renal water excretion|diuresis Wikipedia:Diuresis This term was made obsolete because its definition was inaccurate. GO:0035810 True GO:0003076 biological_process owl:Class GO:0032895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052269 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001078 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035926 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072474 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075052 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004426 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048233 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071150 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007153 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072486 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052935 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0020012 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016666 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990240 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030967 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052299 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019943 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019945 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075326 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052854 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044425 biolink:NamedThing obsolete membrane part OBSOLETE. Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0016020 True cellular_component owl:Class GO:0044670 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015725 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015460 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042319 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030462 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019868 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044690 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016448 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000777 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015088 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015696 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002214 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016196 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030872 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044235 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050702 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102437 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990301 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006992 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904265 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903129 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001590 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010580 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015405 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006322 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044451 biolink:NamedThing obsolete nucleoplasm part OBSOLETE. Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005654 True cellular_component owl:Class GO:0044123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007457 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001211 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902361 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001600 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015586 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034273 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008601 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001213 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904696 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001085 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055032 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042236 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075238 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034566 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016809 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075710 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019259 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019110 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048607 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015236 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034629 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018728 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0023034 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044411 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045422 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016947 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030610 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150148 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000169 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030481 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050875 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045354 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035412 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045011 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015392 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004696 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052558 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031193 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052527 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031202 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008952 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018371 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016940 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032859 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019723 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007243 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075144 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015523 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000364 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048068 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090039 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0021857 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003982 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031081 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061019 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001045 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044433 biolink:NamedThing obsolete cytoplasmic vesicle part OBSOLETE. Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0031410 True cellular_component owl:Class GO:0008416 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030873 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044400 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015619 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045423 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045072 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043346 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032155 biolink:NamedThing obsolete cell division site part OBSOLETE. Any constituent part of the cell division plane, the eventual plane of cell division in a dividing cell. tmpzr1t_l9r_go_relaxed.owl cell division plane part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0032153 True cellular_component owl:Class GO:0009592 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032851 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050222 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044462 biolink:NamedThing obsolete external encapsulating structure part OBSOLETE. Any constituent part of an external encapsulating structure, a structure that lies outside the plasma membrane and surrounds the entire cell. This does not include the periplasmic space but does include the outer membrane (of gram negative bacteria) or cell wall (of yeast or Gram positive bacteria). tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0030312 True cellular_component owl:Class GO:0004434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0100022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0100021 biolink:NamedThing obsolete regulation of iron ion transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates iron ion transport. tmpzr1t_l9r_go_relaxed.owl regulation of iron ion import by transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True GO:0100022 biological_process owl:Class NCBITaxon:33682 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0006319 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052305 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003679 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007242 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019663 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048042 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042260 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0099516 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045360 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019189 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016698 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030499 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015118 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051577 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052285 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902419 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001137 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043018 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0102101 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052330 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044420 biolink:NamedThing obsolete extracellular matrix component OBSOLETE. Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants). tmpzr1t_l9r_go_relaxed.owl extracellular matrix part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0031012 True cellular_component owl:Class GO:0004011 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000824 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008699 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030230 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046728 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045533 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047226 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001643 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008067 biolink:NamedThing obsolete metabotropic glutamate, GABA-B-like receptor activity OBSOLETE. A G protein-coupled receptor that is structurally/functionally related to the metabotropic glutamate receptor. tmpzr1t_l9r_go_relaxed.owl class C GPCR|class C G-protein coupled receptor|class C G protein coupled receptor|metabotropic glutamate, GABA-B-like receptor activity|class C orphan receptor activity This term was made obsolete because it represents a gene product and is named based on protein features. True GO:0001643|GO:0001645 molecular_function owl:Class GO:0097460 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016245 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045286 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052270 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017079 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045867 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045420 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150156 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002422 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051578 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090478 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044702 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000788 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045381 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0103019 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048123 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052385 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016030 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042108 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045043 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052153 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007222 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051374 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046614 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905964 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008485 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010003 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004688 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072422 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072618 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050701 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002163 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052824 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0038049 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006345 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008501 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018540 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904209 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015678 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045417 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046746 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017104 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045386 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042228 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031180 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048127 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045421 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051528 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051811 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071780 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046756 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044110 biolink:NamedThing obsolete growth involved in symbiotic interaction OBSOLETE. The increase in size or mass of an organism occurring when the organism is in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth on or near surface of other organism involved in symbiotic interaction|growth on or near surface of other organism during symbiotic interaction|growth during symbiotic interaction https://github.com/geneontology/go-ontology/issues/20273 This term has been obsoleted because it represents an assay for viability, not a real biological process. jl 2009-07-30T02:22:33Z True GO:0044153 biological_process owl:Class GO:0045380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031181 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001625 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015588 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047737 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009053 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045075 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032513 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045816 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044261 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044456 biolink:NamedThing obsolete synapse part OBSOLETE. Any constituent part of a synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell. tmpzr1t_l9r_go_relaxed.owl synaptic component NIF_Subcellular:sao1784069613 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0045202 True cellular_component owl:Class GO:0008858 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070812 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075601 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017037 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990954 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045351 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045356 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071844 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902302 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016481 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051636 biolink:NamedThing obsolete Gram-negative bacterial cell surface binding OBSOLETE. Binding to a component on the surface of a Gram-negative bacterial cell. tmpzr1t_l9r_go_relaxed.owl Gram-negative bacterial cell surface binding|Gram-negative bacterium cell surface binding|Gram-negative bacterial binding|Gram-negative bacterium binding|binding to Gram-negative bacterium This term was made obsolete because it is an unnecessary grouping term and was causing confusion. GO:0003823|GO:0050829 True GO:0008368 molecular_function owl:Class GO:0003742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010576 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097481 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055030 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001159 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046388 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010251 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035105 biolink:NamedThing obsolete sterol regulatory element binding protein import into nucleus OBSOLETE. The transfer of a sterol regulatory element binding protein (SREBP) into the nucleus, across the nuclear membrane, in response to altered levels of one or more lipids. SREBPs are transcription factors that bind sterol regulatory elements (SREs), DNA motifs found in the promoters of target genes. tmpzr1t_l9r_go_relaxed.owl SREBP nuclear translocation|sterol depletion response, SREBP nuclear translocation|SREBP import into nucleus involved in sterol depletion response|SREBP import into nucleus|sterol regulatory element binding protein nuclear translocation involved in sterol depletion response|sterol depletion response, SREBP import into nucleus|sterol depletion response, sterol regulatory element binding protein nuclear translocation|sterol depletion response, sterol regulatory element binding protein import into nucleus|sterol regulatory element binding protein nuclear translocation|sterol regulatory element binding protein import into nucleus involved in sterol depletion response The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606|GO:0042306 True GO:0006993 biological_process owl:Class GO:0015598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006674 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071149 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052301 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0047984 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031574 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016965 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016956 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003893 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090097 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072619 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052068 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004887 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000790 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005296 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035031 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031888 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002740 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001182 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052304 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class OIO:hasExactSynonym biolink:NamedThing has_exact_synonym tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0004685 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016023 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052556 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019223 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016195 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042533 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090525 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005100 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032360 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050716 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004431 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030472 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000355 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005120 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006300 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048365 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000273 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990163 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007330 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000188 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001584 biolink:NamedThing obsolete rhodopsin-like receptor activity OBSOLETE. A G protein-coupled receptor that is structurally/functionally related to the rhodopsin receptor. tmpzr1t_l9r_go_relaxed.owl rhodopsin-like receptor activity|class A orphan receptor activity|Class A GPCR|Class A G protein coupled receptor|Class A G-protein coupled receptor This term was made obsolete because it represents a gene product and is named based on protein features. True GO:0001620 molecular_function owl:Class GO:0031936 biolink:NamedThing obsolete negative regulation of chromatin silencing OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing. tmpzr1t_l9r_go_relaxed.owl down-regulation of chromatin silencing|negative regulation of heterochromatic silencing|down regulation of chromatin silencing|downregulation of chromatin silencing|loss of chromatin silencing|inhibition of chromatin silencing https://github.com/geneontology/go-ontology/issues/22060 This term was obsoleted because it was too vague: regulation of chromatin (gene) silencing takes place via upstream signaling pathways. True GO:0006345 biological_process owl:Class GO:0044122 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048427 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030461 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008434 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901240 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043044 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902658 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006156 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046407 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042050 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000506 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048276 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006951 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005110 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072480 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019106 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903309 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018821 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005454 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005468 biolink:NamedThing obsolete small-molecule carrier or transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small-molecule carrier or transporter This term was made obsolete because it does not provide a useful functional classification. GO:0005215 True GO:0005454|GO:0005453 molecular_function owl:Class GO:0015178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902449 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015815 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0020029 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044749 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051313 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051856 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001663 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001203 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044152 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004221 biolink:NamedThing obsolete ubiquitin thiolesterase activity OBSOLETE. Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol. tmpzr1t_l9r_go_relaxed.owl ubiquitin C-terminal hydrolase activity|ubiquitin carboxy-terminal esterase activity|ubiquitin thiolesterase activity|ubiquitin thioesterase activity|ubiquitinyl hydrolase 1 activity|ubiquitin-C-terminal-thioester hydrolase activity|ubiquitin carboxy-terminal hydrolase activity KEGG_REACTION:R02418|MetaCyc:UBIQUITIN-THIOLESTERASE-RXN This term was made obsolete because this molecular function does not exist. GO:0004843 True GO:0008577 molecular_function owl:Class GO:0001728 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008060 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1905077 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016194 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001179 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003971 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007145 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071775 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001176 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019644 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072408 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001033 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042231 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008402 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045379 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0071156 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005086 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000784 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005116 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000503 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1901549 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051855 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072442 biolink:NamedThing obsolete detection of stimulus involved in mitotic DNA replication checkpoint OBSOLETE. The series of events in which information about whether DNA replication is complete is received and converted into a molecular signal, contributing to a mitotic DNA replication checkpoint. tmpzr1t_l9r_go_relaxed.owl S-M checkpoint sensor mechanism|mitotic DNA replication checkpoint sensor mechanism|sensing involved in mitotic DNA replication checkpoint|sensing involved in S-M checkpoint|detection of stimulus involved in S-M checkpoint|S-M checkpoint sensor process|mitotic DNA replication checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T05:12:49Z True GO:0072445 biological_process owl:Class GO:0046840 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097679 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048676 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090247 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043725 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060555 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045318 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046531 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005083 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GOP:syngo_official_label biolink:NamedThing label approved by the SynGO project tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0001107 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032191 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045118 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016909 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016141 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150193 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002216 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902468 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006830 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007334 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015235 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009393 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044792 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000366 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2000599 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048305 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001184 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902580 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009817 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072372 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018987 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006344 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070829 biolink:NamedThing obsolete heterochromatin maintenance OBSOLETE. The chromatin organization process that preserves heterochromatin in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl maintenance of heterochromatic silencing|heterochromatin maintenance involved in chromatin silencing|maintenance of chromatin silencing https://github.com/geneontology/go-ontology/issues/22013 This term was obsoleted because it is redundant with heterochromatin organization and assembly terms. mah 2009-07-23T04:14:49Z True GO:0070870|GO:0006344 biological_process owl:Class GO:0052266 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016067 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032313 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015177 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004406 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097312 biolink:NamedThing obsolete bacterial biofilm matrix component OBSOLETE. Any constituent part of the biofilm matrix, a structure lying external to bacterial cells. A biofilm is an aggregate of surface-associated bacteria, and the biofilm matrix is the envelope of polymeric substances that surrounds the bacteria. tmpzr1t_l9r_go_relaxed.owl biofilm matrix part Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0097311 pr 2012-05-24T11:22:56Z True cellular_component owl:Class GO:0044801 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072458 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090457 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052371 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018381 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051605 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008702 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060103 biolink:NamedThing obsolete collagen and cuticulin-based cuticle extracellular matrix part OBSOLETE. Any constituent part of the collagen and cuticulin-based cuticle extracellular matrix, a collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0060102 True cellular_component owl:Class GO:0001075 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046846 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055098 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010741 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015998 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031191 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043166 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015490 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902451 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0120079 biolink:NamedThing obsolete regulation of microfilament motor activity OBSOLETE. Any process that modulates the frequency, rate or extent of microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl regulation of actin-dependent ATPase activity|regulation of actin filament motor activity|regulation of actin-filament motor activity|regulation of actin-activated ATPase activity|regulation of myosin ATPase activity|regulation of muscle motor activity https://github.com/geneontology/go-ontology/issues/20877 This term was obsoleted because it represents a molecular function. GO:0140659 krc 2017-07-05T20:53:49Z True GO:1904621 biological_process owl:Class GO:0061814 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043788 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042240 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050751 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030498 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052423 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052382 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044450 biolink:NamedThing obsolete microtubule organizing center part OBSOLETE. Any constituent part of a microtubule organizing center, a region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow. tmpzr1t_l9r_go_relaxed.owl microtubule organizing centre component|MTOC component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005815 True cellular_component owl:Class GO:0042005 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044422 biolink:NamedThing obsolete organelle part OBSOLETE. Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0043226 True cellular_component owl:Class GO:1902450 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048182 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045452 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051830 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039539 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043623 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080087 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0017035 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006514 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000040 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044117 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019047 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006758 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001130 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042927 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030390 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004597 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0035620 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003745 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008598 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044459 biolink:NamedThing obsolete plasma membrane part OBSOLETE. Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005886 True cellular_component owl:Class GO:1902739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052388 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051806 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050375 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042456 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051227 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044429 biolink:NamedThing obsolete mitochondrial part OBSOLETE. Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. tmpzr1t_l9r_go_relaxed.owl mitochondrial subcomponent|mitochondrion component NIF_Subcellular:sao666410040 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005739 True cellular_component owl:Class GO:0018349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0140016 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:38254 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0005717 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004293 biolink:NamedThing obsolete tissue kallikrein activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Xaa bonds in small molecule substrates. Highly selective action to release kallidin (lysyl-bradykinin) from kininogen involves hydrolysis of Met-Xaa or Leu-Xaa. The rat enzyme is unusual in liberating bradykinin directly from autologous kininogens by cleavage at two Arg-Xaa bonds. tmpzr1t_l9r_go_relaxed.owl padutin|bradykininogenase|urinary kallikrein|glandular kallikrein activity|callicrein|tissue kallikrein activity|kallidinogenase|pancreatic kallikrein|onokrein P|salivary kallikrein|urokallikrein|padreatin|submandibular kallikrein|dilminal D|glumorin|kidney kallikrein|submaxillary kallikrein|depot-padutin|kininogenin activity|kininogenase GO:0004252 This term was made obsolete because it represents a gene product. True GO:0004279 molecular_function owl:Class GO:0048739 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075125 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043355 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036142 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004981 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033267 biolink:NamedThing obsolete axon part OBSOLETE. A part of an axon, a cell projection of a neuron. tmpzr1t_l9r_go_relaxed.owl NIF_Subcellular:sao280355188 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0030424 True cellular_component owl:Class GO:0046991 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045524 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032860 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001201 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090003 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072403 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001538 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009981 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052069 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075716 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006137 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004646 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0010281 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097249 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044709 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045350 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051690 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990289 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052004 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031188 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015287 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032128 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0043339 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033155 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1904264 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008971 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044236 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048429 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005659 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070491 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048413 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070872 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006827 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990035 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000358 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007404 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042172 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000442 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052259 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048417 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033216 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1903274 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044428 biolink:NamedThing obsolete nuclear part OBSOLETE. Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. tmpzr1t_l9r_go_relaxed.owl nuclear subcomponent|nucleus component NIF_Subcellular:sao1499850686 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005634 True cellular_component owl:Class NCBITaxon:6237 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0006262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044439 biolink:NamedThing obsolete peroxisomal part OBSOLETE. Any constituent part of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2). tmpzr1t_l9r_go_relaxed.owl peroxisome component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005777 True cellular_component owl:Class GO:0019839 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075126 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004701 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050754 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052061 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045418 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902827 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051662 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990944 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019067 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030349 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033136 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0055132 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009928 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:5878 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0090061 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042737 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033213 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003869 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900455 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070870 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030630 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090467 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030765 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052526 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0061489 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044449 biolink:NamedThing obsolete contractile fiber part OBSOLETE. Any constituent part of a contractile fiber, a fiber composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. tmpzr1t_l9r_go_relaxed.owl contractile fibre component|muscle fiber component|muscle fibre component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0043292 True cellular_component owl:Class GO:0048748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051243 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990707 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004440 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042234 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075059 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007466 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048110 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030360 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019175 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019946 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042503 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000021 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0060553 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044434 biolink:NamedThing obsolete chloroplast part OBSOLETE. Any constituent part of a chloroplast, a chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0009507 True cellular_component owl:Class GO:0098587 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044443 biolink:NamedThing obsolete pilus part OBSOLETE. Any constituent part of a pilus, a proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter. tmpzr1t_l9r_go_relaxed.owl fimbrium component|fimbrial part|pilus component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0009289 True cellular_component owl:Class GO:0005554 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075007 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001200 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015457 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044366 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008394 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042829 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030470 biolink:NamedThing obsolete spore germination (sensu Fungi) OBSOLETE. Process of breakdown or opening of the spore-containing structure, modification of the spore wall, and resumption of growth of the spore. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751). tmpzr1t_l9r_go_relaxed.owl germination (sensu Saccharomyces)|spore germination (sensu Fungi) GO:0009847 This term was made obsolete because a sensu term was not needed. True GO:0007153 biological_process owl:Class GO:0090622 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0089712 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990283 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015266 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030385 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000998 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018368 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:10090 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0008723 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015978 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048430 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000143 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007544 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005860 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046675 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015396 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044039 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0022816 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009362 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015201 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016654 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004002 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048129 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001124 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0032314 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072621 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0012503 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044435 biolink:NamedThing obsolete plastid part OBSOLETE. Any constituent part of a plastid, a member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0009536 True cellular_component owl:Class GO:0071789 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004770 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008588 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018346 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044427 biolink:NamedThing obsolete chromosomal part OBSOLETE. Any constituent part of a chromosome, a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. tmpzr1t_l9r_go_relaxed.owl chromosome part|chromosome component|chromosomal component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005694 True cellular_component owl:Class GO:0044116 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042872 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008357 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034448 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031197 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0002818 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0150162 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902540 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045399 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004863 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:2001183 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042507 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044432 biolink:NamedThing obsolete endoplasmic reticulum part OBSOLETE. Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. tmpzr1t_l9r_go_relaxed.owl ER component Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005783 True cellular_component owl:Class GO:0004199 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:33630 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0052566 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044268 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0004724 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005379 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050705 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0051441 biolink:NamedThing obsolete positive regulation of ubiquitin-protein ligase activity involved in meiotic cell cycle OBSOLETE. Any process that activates, maintains or increases the rate of ubiquitin ligase activity during the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of ubiquitin ligase activity during meiotic cell cycle|anaphase promoting complex activation during meiotic cell cycle|meiotic SCF complex activator|up regulation of ubiquitin ligase activity during meiotic cell cycle|anaphase-promoting complex activation during meiotic cell cycle|activation of ubiquitin ligase activity of anaphase promoting complex during meiotic cell cycle|activation of anaphase-promoting complex activity involved in meiotic cell cycle|meiotic anaphase-promoting complex activator|activation of ubiquitin ligase activity of APC during meiotic cell cycle|meiotic anaphase promoting complex activator|APC activation during meiotic cell cycle|activation of anaphase-promoting complex activity during meiotic cell cycle|meiotic APC activation|positive regulation of ubiquitin-protein ligase activity during meiotic cell cycle|positive regulation of ubiquitin ligase activity during meiotic cell cycle|activation of ubiquitin ligase activity during meiotic cell cycle|activation of ubiquitin ligase activity of anaphase-promoting complex during meiotic cell cycle|up-regulation of ubiquitin ligase activity during meiotic cell cycle|meiotic APC activator|upregulation of ubiquitin ligase activity during meiotic cell cycle|meiotic ubiquitin ligase activator|meiotic anaphase promoting complex activation https://github.com/geneontology/go-ontology/issues/15196 This term was obsoleted because it should be captured as a GO-CAM model. True GO:0051487 biological_process owl:Class GO:0072604 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000370 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045408 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0007262 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034259 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0070969 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0036264 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009096 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005284 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005380 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006985 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016276 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052397 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072419 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045245 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902409 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045396 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902881 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990886 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090476 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008014 biolink:NamedThing obsolete calcium-dependent cell adhesion molecule activity OBSOLETE. A calcium-dependent cell adhesion protein (type I membrane protein) that interacts in a homophilic manner in cell-cell interactions. tmpzr1t_l9r_go_relaxed.owl calcium-dependent cell adhesion molecule activity|cadherin This term was made obsolete because it represents a gene product. GO:0016021|GO:0016339|GO:0005515 True GO:0001538 molecular_function owl:Class GO:0001210 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016951 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001071 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016178 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016510 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class NCBITaxon:9606 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0003766 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015300 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0090509 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005926 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044431 biolink:NamedThing obsolete Golgi apparatus part OBSOLETE. Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. tmpzr1t_l9r_go_relaxed.owl Golgi component|Golgi subcomponent NIF_Subcellular:sao624292949 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0005794 True cellular_component owl:Class GO:0008850 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0008848 biolink:NamedThing obsolete enterobactin synthetase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nonribosomal peptide synthetase|enterochelin synthetase activity|enterobactin synthetase GO:0009239 This term was made obsolete because it represents a process rather than a function. True GO:0008850 molecular_function owl:Class GO:0019861 biolink:NamedThing obsolete flagellum OBSOLETE. Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium. tmpzr1t_l9r_go_relaxed.owl flagellum Wikipedia:Flagellum This term was made obsolete because it was an unnecessary grouping term. Eukaryotic flagella were deemed to be equivalent to cilia and merged, so the only remaining child to this term was 'bacterial-type flagellum ; GO:0009288'. GO:0005929|GO:0009288 True GO:0008223 cellular_component owl:Class GO:0009870 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003741 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0072478 biolink:NamedThing obsolete detection of stimulus involved in mitotic spindle assembly checkpoint OBSOLETE. The series of events in which information about whether the spindle is correctly assembled, and chromosomes are attached to the spindle, is received and converted into a molecular signal, contributing to a mitotic cell cycle spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle spindle assembly checkpoint sensor mechanism|stimulus detection involved in SAC-independent checkpoint|mitotic cell cycle spindle assembly checkpoint sensor process|stimulus sensing involved in SAC-independent checkpoint|stimulus detection involved in DMA1-dependent checkpoint|sensing involved in mitotic cell cycle spindle assembly checkpoint|detection of stimulus involved in Dma1-dependent checkpoint|perception of stimulus involved in DMA1-dependent checkpoint|perception of stimulus involved in SAC-independent checkpoint|detection of stimulus involved in SAC-independent checkpoint|detection of stimulus involved in mitotic cell cycle spindle assembly checkpoint|stimulus sensing involved in DMA1-dependent checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T12:11:18Z True GO:1902419 biological_process owl:Class GO:0048063 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0042486 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005339 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0034065 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046733 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006151 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0098748 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048431 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015359 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0097549 biolink:NamedThing obsolete chromatin organization involved in negative regulation of transcription OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription by chromatin organization. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from Pol II promoter by histone modification|negative regulation of transcription from RNA polymerase II promoter by histone modification|negative regulation of global transcription from Pol II promoter by histone modification|negative regulation of gene-specific transcription from RNA polymerase II promoter by histone modification|negative regulation of transcription from RNA polymerase II promoter, global by histone modification|negative regulation of transcription by chromatin organization https://github.com/geneontology/go-ontology/issues/22041 This term was obsoleted because these it was redundant with other terms: heterochromatin assembly and negative regulation of gene expression, epigenetic. pr 2014-01-22T08:20:50Z True GO:1903758 biological_process owl:Class GO:0032316 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000996 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0030693 biolink:NamedThing obsolete caspase activity OBSOLETE. Catalysis of the hydrolysis of a peptide bond on the carboxyl side of an aspartate residue. tmpzr1t_l9r_go_relaxed.owl caspase-7 activity|caspase-1 activity|caspase-10 activity|caspase-4 activity|caspase-6 activity|caspase-9 activity|caspase-3 activity|caspase activity|caspase-8 activity|caspase-2 activity|effector caspase activity|signaling (initiator) caspase activity|caspase-5 activity GO:0004197 This term was made obsolete because it represents a gene product. True GO:0004199 molecular_function owl:Class GO:0000903 biolink:NamedThing obsolete regulation of cell shape during vegetative growth phase OBSOLETE. Any process that modulates the surface configuration of a cell during the vegetative growth phase. The vegetative growth phase is the growth phase during which single celled organisms reproduce by budding or other asexual methods. tmpzr1t_l9r_go_relaxed.owl regulation of cell morphogenesis during vegetative growth phase|cell morphogenesis during vegetative growth phase|cellular morphogenesis during vegetative growth The reason for obsoletion is that biological phases should be captured as extensions. True GO:0090061 biological_process owl:Class NCBITaxon:58024 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl GO:0006416 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0050725 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001009 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009929 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001022 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0048424 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0033742 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0019950 biolink:NamedThing obsolete SMT3-dependent protein catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by covalent attachment of the ubiquitin-like protein SMT3 to the target protein. tmpzr1t_l9r_go_relaxed.owl SMT3-dependent protein catabolism|SMT3-dependent protein breakdown|SMT3-dependent protein degradation See issue #21890. SMT3 protein mod is sumoylation and does not always lead to degradation. True GO:0019946 biological_process owl:Class GO:0008895 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005098 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0044453 biolink:NamedThing obsolete nuclear membrane part OBSOLETE. Any constituent part of the nuclear membrane, the envelope that surrounds the nucleus of eukaryotic cells. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. GO:0031965 True cellular_component owl:Class GO:0018086 biolink:NamedThing obsolete alanine racemization OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl alanine racemization This term was made obsolete because it was replaced with more appropriate terms. GO:0019122 True GO:0018368 biological_process owl:Class GO:0001904 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class RO:0002091 biolink:NamedThing starts_during tmpzr1t_l9r_go_relaxed.owl RO:0002091|RO:0002091 external|external starts_during|starts_during owl:ObjectProperty BFO:0000066 biolink:NamedThing occurs in tmpzr1t_l9r_go_relaxed.owl BFO:0000066|BFO:0000066 external|external occurs_in|occurs_in owl:ObjectProperty GO:0046261 biolink:NamedThing obsolete 4-nitrotoluene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-nitrotoluene, 1-methyl-4-nitrobenzene. tmpzr1t_l9r_go_relaxed.owl 4-nitrotoluene biosynthesis|4-nitrotoluene anabolism|4-nitrotoluene biosynthetic process|4-nitrotoluene formation|4NT biosynthetic process|4NT biosynthesis|4-nitrotoluene synthesis GO:0019257 This term was made obsolete because 4-nitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0001063 biolink:NamedThing obsolete plastid PEP-B RNA polymerase activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-B RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16738 GO:0003899 This term was obsoleted because the activity is the same as its parent. krc 2010-10-19T03:46:46Z True molecular_function owl:Class GO:1903695 biolink:NamedThing obsolete MAPK cascade involved in ascospore formation OBSOLETE. Any MAPK cascade that is involved in ascospore formation. tmpzr1t_l9r_go_relaxed.owl MAPK signaling involved in ascospore formation|MAP kinase cascade involved in ascospore formation|ERK/MAPK cascade involved in ascospore formation|MAPK signal transduction involved in ascospore formation|mitogen-activated protein kinase cascade involved in ascospore formation|MAPKKK cascade during sporulation involved in ascospore biosynthesis|mitogen-activated protein kinase cascade involved in ascospore biosynthesis|MAPK signal transduction involved in ascospore biosynthesis|ERK/MAPK cascade involved in ascospore biosynthesis|MAPKKK cascade involved in ascospore formation|MAPKKK cascade during sporulation involved in ascospore formation|MAPK signalling involved in ascospore biosynthesis|MAPK signalling involved in ascospore formation|MAP kinase kinase kinase cascade involved in ascospore biosynthesis|MAPK signaling involved in ascospore biosynthesis|MAP kinase kinase kinase cascade involved in ascospore formation|MAPKKK cascade involved in ascospore biosynthesis|MAP kinase cascade involved in ascospore biosynthesis|MAPK cascade involved in ascospore biosynthesis https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. al 2014-12-02T22:09:18Z True biological_process owl:Class GO:0004249 biolink:NamedThing obsolete stromelysin 3 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl MMP-11|stromelysin 3 activity|matrix metalloproteinase 11 GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0042027 biolink:NamedThing obsolete cyclophilin-type peptidyl-prolyl cis-trans isomerase activity OBSOLETE. Catalysis of the reaction: peptidylproline (omega=180) = peptidylproline (omega=0). tmpzr1t_l9r_go_relaxed.owl cyclophilin-type peptidyl-prolyl cis-trans isomerase activity This term was made obsolete because it is contains gene product specific characteristics. GO:0003755 True molecular_function owl:Class GO:0019940 biolink:NamedThing obsolete SUMO-dependent protein catabolic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl SUMO-dependent protein breakdown|SUMO-dependent protein degradation|SUMO-dependent protein catabolic process|SUMO-dependent protein catabolism This term was made obsolete because it does not reflect an accurate biological process, as sumoylation of a protein does not lead to catabolism of that protein. GO:0016926|GO:0016925 True biological_process owl:Class GO:0052219 biolink:NamedThing obsolete negative energy taxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism on, within or near a second organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative energy taxis in response to environment of other organism|negative energy taxis in environment of other organism during symbiotic interaction This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0008085 biolink:NamedThing obsolete phototransduction, visible light, light adaptation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl phototransduction, visible light, light adaptation This term was made obsolete because the term name is ambiguous. GO:0007602 True biological_process owl:Class GO:0001317 biolink:NamedThing obsolete accumulation of oxidatively modified proteins involved in replicative cell aging OBSOLETE. Accumulation of proteins that have undergone reactions with reactive oxygen species in aging dividing cells and exhibit modifications such as increased protein carbonyl content, oxidized methionine, protein hydrophobicity, and cross-linking. tmpzr1t_l9r_go_relaxed.owl accumulation of oxidatively modified proteins during replicative cell aging|accumulation of oxidatively modified proteins during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:1903290 biolink:NamedThing obsolete negative regulation of ATP catabolic process OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP catabolic process. tmpzr1t_l9r_go_relaxed.owl down-regulation of ATP catabolism|downregulation of ATP degradation|inhibition of ATP hydrolysis|inhibition of ATP catabolism|downregulation of ATP catabolism|negative regulation of ATP breakdown|down regulation of ATP catabolic process|negative regulation of ATP hydrolysis|inhibition of ATP breakdown|inhibition of ATP catabolic process|down regulation of ATP breakdown|downregulation of ATP hydrolysis|down-regulation of ATP hydrolysis|down regulation of ATP catabolism|downregulation of ATP breakdown|down-regulation of ATP breakdown|inhibition of ATP degradation|down regulation of ATP hydrolysis|negative regulation of ATP degradation|down regulation of ATP degradation|downregulation of ATP catabolic process|down-regulation of ATP catabolic process|down-regulation of ATP degradation|negative regulation of ATP catabolism The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0032780 rl 2014-08-11T14:36:47Z True biological_process owl:Class GO:0008155 biolink:NamedThing obsolete larval behavior (sensu Drosophila) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl larval behavior (sensu Drosophila) GO:0030537 This term was made obsolete because there is no clear difference between the sensu Drosophila term and the generic term. True biological_process owl:Class GO:0042804 biolink:NamedThing obsolete protein homooligomerization activity OBSOLETE. Interacting selectively with identical proteins to form a homooligomer. tmpzr1t_l9r_go_relaxed.owl protein homooligomerization activity|oligomerization activity GO:0051260 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0006118 biolink:NamedThing obsolete electron transport OBSOLETE. The transport of electrons from an electron donor to an electron acceptor. tmpzr1t_l9r_go_relaxed.owl electron transfer|oxidized glutathione reduction|6-phosphofructokinase reduction|dihydropteridine reduction|dihydrobiopterin reduction|other pathways of electron transport|dihydrolipoamide reduction|electron transport|protein-disulfide reduction|dihydrolipoylprotein reduction This term was made obsolete because it describes a molecular function. GO:0016491|GO:0022904 True biological_process owl:Class GO:0075332 biolink:NamedThing obsolete modulation by host of symbiont adenylate cyclase-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1903149 biolink:NamedThing obsolete adenine transmembrane transporter activity involved in adenine import into cell OBSOLETE. Any adenine transmembrane transporter activity that is involved in adenine import into cell. tmpzr1t_l9r_go_relaxed.owl adenine transmembrane transporter activity involved in adenine import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:30Z True molecular_function owl:Class GO:1904921 biolink:NamedThing obsolete negative regulation of MAPK cascade involved in axon regeneration OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of MAPK cascade involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl downregulation of MAPKKK cascade during sporulation involved in axon regeneration|down-regulation of MAPK signal transduction involved in axon regeneration|down-regulation of MAPK signalling involved in axon regeneration|downregulation of ERK/MAPK cascade involved in axon regeneration|downregulation of MAP kinase kinase kinase cascade involved in axon regeneration|down-regulation of MAPK cascade involved in axon regeneration|inhibition of MAPKKK cascade during sporulation involved in axon regeneration|down-regulation of ERK/MAPK cascade involved in axon regeneration|downregulation of MAPKKK cascade involved in axon regeneration|down regulation of mitogen-activated protein kinase cascade involved in axon regeneration|negative regulation of MAPK signaling involved in axon regeneration|negative regulation of MAPK signal transduction involved in axon regeneration|inhibition of mitogen-activated protein kinase cascade involved in axon regeneration|negative regulation of MAPKKK cascade during sporulation involved in axon regeneration|downregulation of MAP kinase cascade involved in axon regeneration|downregulation of MAPK signalling involved in axon regeneration|negative regulation of ERK/MAPK cascade involved in axon regeneration|down regulation of ERK/MAPK cascade involved in axon regeneration|downregulation of MAPK signal transduction involved in axon regeneration|down regulation of MAPK signaling involved in axon regeneration|negative regulation of MAPK signalling involved in axon regeneration|negative regulation of mitogen-activated protein kinase cascade involved in axon regeneration|inhibition of MAP kinase kinase kinase cascade involved in axon regeneration|inhibition of ERK/MAPK cascade involved in axon regeneration|negative regulation of MAP kinase cascade involved in axon regeneration|inhibition of MAPK signalling involved in axon regeneration|inhibition of MAP kinase cascade involved in axon regeneration|downregulation of MAPK signaling involved in axon regeneration|down-regulation of MAP kinase kinase kinase cascade involved in axon regeneration|downregulation of mitogen-activated protein kinase cascade involved in axon regeneration|down regulation of MAPK signalling involved in axon regeneration|downregulation of MAPK cascade involved in axon regeneration|down regulation of MAP kinase cascade involved in axon regeneration|down-regulation of mitogen-activated protein kinase cascade involved in axon regeneration|down-regulation of MAPKKK cascade during sporulation involved in axon regeneration|inhibition of MAPKKK cascade involved in axon regeneration|negative regulation of MAPKKK cascade involved in axon regeneration|down regulation of MAPKKK cascade during sporulation involved in axon regeneration|down regulation of MAPKKK cascade involved in axon regeneration|inhibition of MAPK signal transduction involved in axon regeneration|down regulation of MAPK signal transduction involved in axon regeneration|inhibition of MAPK cascade involved in axon regeneration|negative regulation of MAP kinase kinase kinase cascade involved in axon regeneration|down regulation of MAP kinase kinase kinase cascade involved in axon regeneration|inhibition of MAPK signaling involved in axon regeneration|down regulation of MAPK cascade involved in axon regeneration|down-regulation of MAPKKK cascade involved in axon regeneration|down-regulation of MAP kinase cascade involved in axon regeneration|down-regulation of MAPK signaling involved in axon regeneration https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. kmv 2016-01-25T17:03:42Z True biological_process owl:Class GO:0030821 biolink:NamedThing obsolete negative regulation of cAMP catabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl negative regulation of adenosine 3',5'-cyclophosphate catabolic process|negative regulation of cAMP catabolism|inhibition of cAMP catabolic process|negative regulation of cyclic AMP catabolic process|negative regulation of 3',5' cAMP catabolic process|negative regulation of 3',5'-cAMP catabolic process|negative regulation of adenosine 3',5'-cyclophosphate catabolism|negative regulation of cAMP breakdown|downregulation of cAMP catabolic process|down-regulation of cAMP catabolic process|down regulation of cAMP catabolic process|negative regulation of 3',5'-cAMP catabolism|negative regulation of cyclic AMP catabolism|negative regulation of cAMP degradation|negative regulation of 3',5' cAMP catabolism The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0052108 biolink:NamedThing obsolete growth or development of symbiont during interaction with host OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of organism in response to host|growth or development of symbiont during interaction with host|growth or development of organism during interaction with host This term was made obsolete because it contained a conjunction (or). GO:0051701|GO:0044111 True biological_process owl:Class GO:0046973 biolink:NamedThing obsolete histone lysine N-methyltransferase activity (H3-K24 specific) OBSOLETE. Catalysis of the addition of a methyl group onto lysine at position 24 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone lysine N-methyltransferase activity (H3-K24 specific) This term was made obsolete because there is no lysine at position 24 of histone H3. GO:0042800 True molecular_function owl:Class GO:0030826 biolink:NamedThing obsolete regulation of cGMP biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP. tmpzr1t_l9r_go_relaxed.owl regulation of cGMP synthesis|regulation of cGMP biosynthesis|regulation of cGMP anabolism|regulation of cGMP formation The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:1900083 biolink:NamedThing obsolete regulation of Sertoli cell proliferation OBSOLETE. Any process that modulates the frequency, rate or extent of Sertoli cell proliferation. tmpzr1t_l9r_go_relaxed.owl regulation of Sertoli cell proliferation This term was obsoleted at the TermGenie Gatekeeper stage. pr 2012-02-02T03:10:50Z True biological_process owl:Class GO:0001076 biolink:NamedThing obsolete transcription factor activity, RNA polymerase II transcription factor binding OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription factor binding transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0061629|GO:0140110 krc 2010-10-22T02:49:32Z True molecular_function owl:Class GO:0009619 biolink:NamedThing obsolete resistance to pathogenic bacteria OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl resistance to pathogenic bacteria GO:0009617 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0048037 biolink:NamedThing obsolete cofactor binding OBSOLETE. Binding to a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. tmpzr1t_l9r_go_relaxed.owl 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group binding interactions that are not all chemically related by the fact that they may be used as a cofactor. True molecular_function owl:Class GO:0075346 biolink:NamedThing obsolete modification by symbiont of host protein by ubiquitination OBSOLETE. The process in which an organism adds one or more ubiquitin groups to a protein of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host protein by ubiquitylation|modification by symbiont of host protein by ubiquitinylation https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0061465 biolink:NamedThing obsolete plasma membrane part of hemidesmosome OBSOLETE. The part of the plasma membrane that contributes to the structure of a hemidesmosome. tmpzr1t_l9r_go_relaxed.owl The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM. dph 2012-10-19T13:47:25Z True cellular_component owl:Class GO:0100068 biolink:NamedThing obsolete positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pyrimidine-containing compound salvage. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0015262 biolink:NamedThing obsolete taurine channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl taurine channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0052454 biolink:NamedThing obsolete modulation by organism of symbiont jasmonic acid-mediated defense response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the jasmonic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont jasmonic acid-mediated defense response|modulation by organism of symbiont JA-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0044800 biolink:NamedThing obsolete multi-organism membrane fusion OBSOLETE. The membrane organization process that joins two lipid bilayers to form a single membrane, involving more than one organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because it is not a biologically meaningful grouping class. jl 2013-09-10T15:06:11Z True biological_process owl:Class GO:0005650 biolink:NamedThing obsolete importin, alpha-subunit transport factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl importin, alpha-subunit transport factor|CAS This term was made obsolete because it represents a single gene product and not a complex. GO:0005634|GO:0005643|GO:0005737 True cellular_component owl:Class GO:0030818 biolink:NamedThing obsolete negative regulation of cAMP biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl negative regulation of cyclic AMP biosynthetic process|negative regulation of adenosine 3',5'-cyclophosphate biosynthesis|negative regulation of cAMP anabolism|downregulation of cAMP biosynthetic process|down regulation of cAMP biosynthetic process|negative regulation of adenosine 3',5'-cyclophosphate biosynthetic process|negative regulation of 3',5'-cAMP biosynthesis|inhibition of cAMP biosynthetic process|negative regulation of cAMP synthesis|negative regulation of cAMP formation|negative regulation of cAMP biosynthesis|down-regulation of cAMP biosynthetic process|negative regulation of 3',5'-cAMP biosynthetic process|negative regulation of cyclic AMP biosynthesis|negative regulation of 3',5' cAMP biosynthetic process|negative regulation of 3',5' cAMP biosynthesis https://github.com/geneontology/go-ontology/issues/14718 The reason for obsoletion is that the term represents a molecular function. True biological_process owl:Class GO:1901294 biolink:NamedThing obsolete negative regulation of SREBP signaling pathway by negative regulation of DNA binding OBSOLETE. Negative regulation of DNA binding that results in negative regulation of a SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of SREBP-mediated signaling pathway by down regulation of DNA binding|negative regulation of SREBP signaling pathway by downregulation of DNA binding|negative regulation of SREBP-mediated signaling pathway by down-regulation of DNA binding|negative regulation of SREBP-mediated signaling pathway by inhibition of DNA binding|negative regulation of SREBP-mediated signaling pathway by downregulation of DNA binding|negative regulation of SREBP signaling pathway by down regulation of DNA binding|negative regulation of SREBP-mediated signalling pathway by inhibition of DNA binding|negative regulation of SREBP-mediated signalling pathway by downregulation of DNA binding|negative regulation of SREBP-mediated signaling pathway by negative regulation of DNA binding|negative regulation of SREBP-mediated signalling pathway by down-regulation of DNA binding|negative regulation of SREBP-mediated signalling pathway by down regulation of DNA binding|negative regulation of SREBP signaling pathway by down-regulation of DNA binding|inhibition of SREBP-dependent transcription by blocking DNA binding|negative regulation of SREBP signaling pathway by inhibition of DNA binding|negative regulation of SREBP-mediated signalling pathway by negative regulation of DNA binding The reason for obsoletion is that this term should be represented by a GO-CAM model. bf 2012-08-20T14:11:03Z True biological_process owl:Class GO:0030535 biolink:NamedThing obsolete adult feeding behavior (sensu Insecta) OBSOLETE. Feeding behavior in a fully developed and mature organism, as described in insects. tmpzr1t_l9r_go_relaxed.owl adult feeding behavior (sensu Insecta) GO:0008343 This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. True biological_process owl:Class GO:0016565 biolink:NamedThing obsolete general transcriptional repressor activity OBSOLETE. Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set. tmpzr1t_l9r_go_relaxed.owl general transcriptional repressor activity This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0045892|GO:0001217|GO:0001227 True molecular_function owl:Class GO:1904922 biolink:NamedThing obsolete positive regulation of MAPK cascade involved in axon regeneration OBSOLETE. Any process that activates or increases the frequency, rate or extent of MAPK cascade involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK cascade during sporulation involved in axon regeneration|upregulation of mitogen-activated protein kinase cascade involved in axon regeneration|positive regulation of ERK/MAPK cascade involved in axon regeneration|positive regulation of mitogen-activated protein kinase cascade involved in axon regeneration|upregulation of MAPK signal transduction involved in axon regeneration|up-regulation of ERK/MAPK cascade involved in axon regeneration|up-regulation of MAP kinase cascade involved in axon regeneration|up-regulation of mitogen-activated protein kinase cascade involved in axon regeneration|positive regulation of MAPK signaling involved in axon regeneration|positive regulation of MAPK signalling involved in axon regeneration|upregulation of MAPKKK cascade involved in axon regeneration|activation of MAP kinase kinase kinase cascade involved in axon regeneration|positive regulation of MAPK signal transduction involved in axon regeneration|upregulation of MAPKKK cascade during sporulation involved in axon regeneration|activation of MAP kinase cascade involved in axon regeneration|up regulation of MAPKKK cascade involved in axon regeneration|activation of MAPKKK cascade involved in axon regeneration|positive regulation of MAP kinase cascade involved in axon regeneration|positive regulation of MAP kinase kinase kinase cascade involved in axon regeneration|up regulation of ERK/MAPK cascade involved in axon regeneration|activation of MAPK signal transduction involved in axon regeneration|up-regulation of MAPK signaling involved in axon regeneration|activation of mitogen-activated protein kinase cascade involved in axon regeneration|activation of MAPK signalling involved in axon regeneration|activation of MAPK signaling involved in axon regeneration|up regulation of MAPK cascade involved in axon regeneration|upregulation of MAPK signalling involved in axon regeneration|upregulation of ERK/MAPK cascade involved in axon regeneration|up regulation of MAPK signalling involved in axon regeneration|up-regulation of MAPKKK cascade involved in axon regeneration|up-regulation of MAPK signal transduction involved in axon regeneration|upregulation of MAP kinase cascade involved in axon regeneration|up regulation of MAPK signal transduction involved in axon regeneration|up-regulation of MAP kinase kinase kinase cascade involved in axon regeneration|up regulation of mitogen-activated protein kinase cascade involved in axon regeneration|up regulation of MAP kinase cascade involved in axon regeneration|upregulation of MAP kinase kinase kinase cascade involved in axon regeneration|upregulation of MAPK cascade involved in axon regeneration|up regulation of MAP kinase kinase kinase cascade involved in axon regeneration|upregulation of MAPK signaling involved in axon regeneration|activation of MAPK cascade involved in axon regeneration|up-regulation of MAPKKK cascade during sporulation involved in axon regeneration|up-regulation of MAPK cascade involved in axon regeneration|positive regulation of MAPKKK cascade involved in axon regeneration|up regulation of MAPKKK cascade during sporulation involved in axon regeneration|positive regulation of MAPKKK cascade during sporulation involved in axon regeneration|up regulation of MAPK signaling involved in axon regeneration|activation of ERK/MAPK cascade involved in axon regeneration|up-regulation of MAPK signalling involved in axon regeneration https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. kmv 2016-01-25T17:03:49Z True biological_process owl:Class GO:0045767 biolink:NamedThing obsolete regulation of anti-apoptosis OBSOLETE. Any process that modulates the frequency, rate or extent of anti-apoptosis. tmpzr1t_l9r_go_relaxed.owl regulation of anti-apoptosis This term was made obsolete because it was ill-defined. True biological_process owl:Class GO:0009483 biolink:NamedThing obsolete caa3-type cytochrome c oxidase OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl caa3-type cytochrome c oxidase GO:0004129 This term was made obsolete because it describes a class of gene products rather than a molecular function. True molecular_function owl:Class GO:0016506 biolink:NamedThing obsolete apoptosis activator activity OBSOLETE. The function held by products which directly activate any step in the process of apoptosis. tmpzr1t_l9r_go_relaxed.owl apoptosis activator activity GO:0006915 This term was made obsolete because it represents involvement in a biological process. True molecular_function owl:Class GO:0051803 biolink:NamedThing obsolete negative regulation of cytolysis in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytolysis of cells in other organism during symbiotic interaction|down-regulation of cytolysis of cells in other organism during symbiotic interaction|negative regulation of cytolysis of cells in other organism involved in symbiotic interaction|inhibition of cytolysis of cells in other organism during symbiotic interaction|down regulation of cytolysis of cells in other organism during symbiotic interaction|downregulation of cytolysis of cells in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0045888 biolink:NamedThing obsolete regulation of transcription of homeotic gene (Polycomb group) OBSOLETE. Any process that modulates the frequency, rate or extent of transcription of homeotic genes of the Polycomb group. tmpzr1t_l9r_go_relaxed.owl regulation of transcription of homeotic gene (Polycomb group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0006357 True biological_process owl:Class GO:0008450 biolink:NamedThing obsolete O-sialoglycoprotein endopeptidase activity OBSOLETE. Catalysis of the hydrolysis of O-sialoglycoproteins; cleaves the -Arg31-Asp32- bond in glycophorin A. Does not cleave unglycosylated proteins, desialylated glycoproteins or glycoproteins that are only N-glycosylated. tmpzr1t_l9r_go_relaxed.owl sialoglycoproteinase activity|glycophorin A proteinase activity|sialoglycoprotease activity|glycoprotease activity|O-sialoglycoprotein endopeptidase activity|glycoproteinase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008956 biolink:NamedThing obsolete peptidyl-dipeptidase Dcp activity OBSOLETE. Catalysis of the hydrolysis of unblocked, C-terminal dipeptides from oligopeptides, with broad specificity. Does not hydrolyze bonds in which P1' is Pro, or both P1 and P1' are Gly. tmpzr1t_l9r_go_relaxed.owl dipeptidyl carboxypeptidase (Dcp)|peptidyl-dipeptidase Dcp activity|dipeptidyl carboxypeptidase activity EC:3.4.15.5|MetaCyc:3.4.15.5-RXN This term was made obsolete because it represents a gene product. GO:0008241|GO:0008235 True molecular_function owl:Class GO:0001040 biolink:NamedThing obsolete RNA polymerase III hybrid type promoter TFIIIB-type transcription factor activity OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III hybrid type promoter, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. krc 2010-08-23T06:28:23Z True molecular_function owl:Class GO:0046808 biolink:NamedThing obsolete assemblon OBSOLETE. Antigenically dense structures located at the periphery of nuclei, close to but not abutting nuclear membranes. Assemblons contain the proteins for immature-capsid assembly; they are located at the periphery of a diffuse structure composed of proteins involved in DNA synthesis, which overlaps only minimally with the assemblons. More than one site can be present simultaneously. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20746 This term was obsoleted because it does not correspond to a real cellular component, but to a site of immunoreactivity. True cellular_component owl:Class GO:0052568 biolink:NamedThing obsolete response to symbiont phytoalexin production OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of phytoalexins produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to symbiont phytoalexin production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0019847 biolink:NamedThing obsolete neurotoxin activity OBSOLETE. Acts to inhibit neural function in another living organism. tmpzr1t_l9r_go_relaxed.owl neurotoxin activity This term was made obsolete because it represents a class of gene products. GO:0090729 True molecular_function owl:Class GO:0030816 biolink:NamedThing obsolete positive regulation of cAMP metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl positive regulation of adenosine 3',5'-cyclophosphate metabolic process|positive regulation of adenosine 3',5'-cyclophosphate metabolism|activation of cAMP metabolic process|positive regulation of cAMP metabolism|upregulation of cAMP metabolic process|positive regulation of 3',5'-cAMP metabolism|positive regulation of 3',5'-cAMP metabolic process|positive regulation of 3',5' cAMP metabolic process|positive regulation of cyclic AMP metabolic process|up-regulation of cAMP metabolic process|positive regulation of 3',5' cAMP metabolism|up regulation of cAMP metabolic process|stimulation of cAMP metabolic process|positive regulation of cyclic AMP metabolism The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0001526 biolink:NamedThing obsolete proteoglycan sulfate transfer OBSOLETE. Transfer of sulfate to a proteoglycan (a glycoprotein whose carbohydrate units are glycosaminoglycans) using 3'-phosphoadenyl sulfate. tmpzr1t_l9r_go_relaxed.owl proteoglycan sulfate transfer|proteoglycan sulphate transfer This term was made obsolete because it represents a group of molecular functions. GO:0006790|GO:0050698|GO:0006029 True biological_process owl:Class GO:0019837 biolink:NamedThing obsolete herbicide susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl herbicide susceptibility/resistance GO:0009635 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0003812 biolink:NamedThing obsolete alternative-complement-pathway C3/C5 convertase activity OBSOLETE. Catalysis of the cleavage of Arg-Ser bond in complement component C3 alpha-chain to yield C3a and C3b, and Arg bond in complement component C5 alpha-chain to yield C5a and C5b. tmpzr1t_l9r_go_relaxed.owl heat-labile factor|C3 proactivator|alternative complement pathway C3(C5) convertase activity|cobra venom factor-dependent C3 convertase|alternative-complement-pathway C3/C5 convertase activity|C3 convertase activity|C3b,Bb,CVF,Bb,C5 convertase activity|complement component C3/C5 convertase (alternative) activity|(CVF)-dependent glycine-rich-beta-glucoprotein|(C3b)n,Bb|C5 convertase activity|glycine-rich beta-glycoprotein|properdin factor B activity|complement factor B activity|complement C 3(C 5) convertase (amplification)|CVF,Bb|proenzyme factor B GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0047859 biolink:NamedThing obsolete dihydroxyphenylalanine ammonia-lyase activity OBSOLETE. Catalysis of the reaction: 3,4-dihydroxy-L-phenylalanine = trans-caffeate + NH3. tmpzr1t_l9r_go_relaxed.owl dihydroxyphenylalanine ammonia-lyase activity|3,4-dihydroxy-L-phenylalanine ammonia-lyase activity|beta-(3,4-dihydroxyphenyl)-L-alanine (DOPA) ammonia-lyase activity|3,4-dihydroxy-L-phenylalanine ammonia-lyase (trans-caffeate-forming) EC:4.3.1.11 This term was made obsolete because the corresponding EC reaction (EC:4.3.1.11) has been deleted from the EC. True molecular_function owl:Class GO:0008451 biolink:NamedThing obsolete X-Pro aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide. tmpzr1t_l9r_go_relaxed.owl Xaa-Pro aminopeptidase activity|X-Pro aminopeptidase activity|aminopeptidase P|proline aminopeptidase|aminoacylproline aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990848 biolink:NamedThing obsolete Positive regulation of removal of reactive oxygen species OBSOLETE. Any process that increases the frequency, rate or extent of removal of reactive oxygen species in a cell. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-09-09T11:59:57Z True biological_process owl:Class GO:0004248 biolink:NamedThing obsolete stromelysin 1 activity OBSOLETE. Catalysis of the preferential cleavage where P1', P2' and P3' are hydrophobic residues. tmpzr1t_l9r_go_relaxed.owl MMP-3|procollagenase activator|collagen-activating protein|proteoglycanase activity|matrix metalloproteinase 3 activity|collagenase activating protein|stromelysin 1 activity|neutral proteoglycanase activity|stromelysin|transin activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1901206 biolink:NamedThing obsolete positive regulation of adrenergic receptor signaling pathway involved in heart process OBSOLETE. Any process that activates or increases the frequency, rate or extent of a cardiac adrenergic receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of beta-adrenergic receptor signalling pathway involved in heart process|activation of beta-adrenergic receptor signalling pathway involved in heart process|up regulation of adrenergic receptor signaling pathway involved in heart process|upregulation of beta-adrenergic receptor signalling pathway involved in heart process|upregulation of adrenergic receptor signalling pathway involved in heart process|up-regulation of adrenergic receptor signaling pathway involved in heart process|upregulation of adrenergic receptor signaling pathway involved in heart process|activation of adrenergic receptor signalling pathway involved in heart process|up-regulation of adrenergic receptor signalling pathway involved in heart process|activation of adrenergic receptor signaling pathway involved in heart process|up regulation of beta-adrenergic receptor signalling pathway involved in heart process|up-regulation of beta-adrenergic receptor signalling pathway involved in heart process|up regulation of adrenergic receptor signalling pathway involved in heart process|positive regulation of adrenergic receptor signalling pathway involved in heart process https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. hjd 2012-07-30T18:33:22Z True biological_process owl:Class GO:0005648 biolink:NamedThing obsolete importin, beta-subunit OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl importin, beta-subunit|karyopherin-beta1 This term was made obsolete because it represents a single gene product and not a complex. GO:0005737|GO:0017056|GO:0005634|GO:0005643 True cellular_component owl:Class GO:0005711 biolink:NamedThing obsolete meiotic chromosome OBSOLETE. A chromosome involved in the process of meiosis. tmpzr1t_l9r_go_relaxed.owl meiotic chromosome This term was made obsolete because it is based on a process. GO:0000794 True cellular_component owl:Class GO:0019000 biolink:NamedThing obsolete endonuclease G activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl endonuclease G activity This term was made obsolete because it represents a gene product. GO:0004521|GO:0004520 True molecular_function owl:Class GO:0008492 biolink:NamedThing obsolete cAMP generating peptide activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cyclic AMP generating peptide activity|cAMP generating peptide activity This term was made obsolete because it describes a gene product. GO:0005179|GO:0004016|GO:0046058 True molecular_function owl:Class GO:1903483 biolink:NamedThing obsolete regulation of maintenance of mitotic actomyosin contractile ring localization OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of mitotic actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|regulation of cytokinetic ring anchoring involved in mitotic cell cycle|regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle The reason for obsoletion is that this term represents a GO-CAM model. vw 2014-09-23T16:12:19Z True biological_process owl:Class GO:1903485 biolink:NamedThing obsolete positive regulation of maintenance of mitotic actomyosin contractile ring localization OBSOLETE. Any process that activates or increases the frequency, rate or extent of maintenance of mitotic actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl up regulation of cytokinetic ring anchoring involved in mitotic cell cycle|activation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|up regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|activation of cytokinetic ring anchoring involved in mitotic cell cycle|positive regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|positive regulation of cytokinetic ring anchoring involved in mitotic cell cycle|up regulation of maintenance of mitotic actomyosin contractile ring localization|upregulation of cytokinetic ring anchoring involved in mitotic cell cycle|up regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|activation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|up-regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|up-regulation of maintenance of mitotic actomyosin contractile ring localization|up-regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|upregulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|up regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|up-regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|up-regulation of cytokinetic ring anchoring involved in mitotic cell cycle|upregulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|activation of maintenance of mitotic actomyosin contractile ring localization|activation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|positive regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|upregulation of maintenance of mitotic actomyosin contractile ring localization|positive regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|upregulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle The reason for obsoletion is that this term represents a GO-CAM model. vw 2014-09-23T16:12:37Z True biological_process owl:Class GO:0071536 biolink:NamedThing obsolete RING-like zinc finger domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a RING-like zinc finger domain interaction. tmpzr1t_l9r_go_relaxed.owl RING-like domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T03:19:47Z True biological_process owl:Class GO:2000460 biolink:NamedThing obsolete regulation of eukaryotic cell surface binding OBSOLETE. Any process that modulates the frequency, rate or extent of eukaryotic cell surface binding. tmpzr1t_l9r_go_relaxed.owl regulation of eukaryotic cell surface binding This term was made obsolete because the cell surface binding terms are ambiguous grouping terms and were causing confusion. GO:0031347|GO:1900120 yaf 2011-03-04T11:59:52Z True biological_process owl:Class GO:1990449 biolink:NamedThing obsolete amylin receptor OBSOLETE. A G protein-coupled signalling receptor complex consisting of the calcitonin receptor and a receptor activity-modifying protein (RAMP). Amylin is produced in beta-islet cells of the pancreas. It is implicated in selective inhibition of insulin-stimulated glucose utilization and glycogen deposition in muscle, gastric emptying, gastric acid secretion, postprandial glucagon secretion and food intake and aids weight loss. tmpzr1t_l9r_go_relaxed.owl AMY2 receptor|AMY1 receptor|CALCR-RAMP1 receptor|CALCR-RAMP2 receptor|CALCR-RAMP3 receptor|AMY3 receptor|amylin receptor An example of this is CALCR in human (P30988) in PMID:10871269. bhm 2014-08-06T10:21:37Z True cellular_component owl:Class GO:2000581 biolink:NamedThing obsolete negative regulation of microtubule motor activity, plus-end-directed OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent microtubule motor activity, plus-end-directed. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATP-dependent microtubule motor activity, plus-end-directed|negative regulation of plus-end-directed kinesin ATPase activity|negative regulation of kinesin activity|negative regulation of plus-end-directed microtubule motor activity|negative regulation of kinesin ATP phosphohydrolase (plus-end-directed) https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140661 bf 2011-04-05T08:39:49Z True biological_process owl:Class GO:1990894 biolink:NamedThing obsolete positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted during the TG review process. It should have been created using a template. al 2015-11-04T20:25:21Z True biological_process owl:Class GO:1902862 biolink:NamedThing obsolete glycerol catabolic process to glycerone phosphate OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glycerol to glycerone phosphate. tmpzr1t_l9r_go_relaxed.owl glycerol breakdown to glycerone phosphate|glycerol degradation to glycerone phosphate|glycerol catabolism to glycerone phosphate|glycerol catabolic process to glycerone phosphate This term was obsoleted at the TermGenie Gatekeeper stage. dph 2014-04-03T14:42:01Z True biological_process owl:Class GO:0060144 biolink:NamedThing obsolete host cellular process involved in virus induced gene silencing OBSOLETE. A cellular process occurring in the host cell that contributes to the process of posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19958 The reason for obsoletion is there there is no evidence that this process exists. True biological_process owl:Class GO:0072333 biolink:NamedThing obsolete anoikis by p53 class mediator OBSOLETE. A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, that results in the induction of anoikis. tmpzr1t_l9r_go_relaxed.owl signal transduction by p53 class mediator resulting in induction of anoikis|anoikis by signal transduction by p53 class mediator|anoikis by p53 class mediator This term was made obsolete because it is misleading, since anoikis occurs following detachment of cells from each other and/or from the culture surface; it is not p53 that induces such separation. mah 2010-11-03T01:52:56Z True biological_process owl:Class GO:0051817 biolink:NamedThing obsolete modulation of process of other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or processes of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of morphology of other organism during symbiotic interaction|modulation of morphology or physiology of other organism during symbiotic interaction|modification of morphology or physiology of other organism during symbiotic interaction|modulation of biological process of other organism involved in symbiotic interaction|modification of morphology or physiology of other organism involved in symbiotic interaction|regulation of physiological process in other organism during symbiotic interaction|regulation of morphology or physiology of other organism during symbiotic interaction|regulation of physiology of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18605 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0052120 biolink:NamedThing obsolete positive aerotaxis in host environment OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive aerotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052584 biolink:NamedThing obsolete oxidoreductase activity, acting on halogen in donors, with NAD or NADP as acceptor OBSOLETE. Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces NAD or NADP. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20613 EC:1.22.1.- This term was obsoleted because EC obsoleted it, and there was no other evidence that this function exists. ai 2010-08-13T10:17:56Z True molecular_function owl:Class GO:0038067 biolink:NamedThing obsolete MAP kinase activity involved in cell wall organization or biogenesis OBSOLETE. Catalysis of the reaction: protein + ATP = protein phosphate + ADP by a mitogen-activated protein kinase, as part of a MAPK signaling cascade that contributes to cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl MAP kinase activity involved in cell wall biogenesis|MAP kinase activity involved in cell wall integrity|MAPK activity involved in cell wall biogenesis This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-25T03:29:04Z True molecular_function owl:Class GO:1990801 biolink:NamedThing obsolete protein phosphorylation involved in mitotic spindle assembly OBSOLETE. Any protein phosphorylation that is involved in mitotic spindle assembly. tmpzr1t_l9r_go_relaxed.owl protein phosphorylation involved in spindle assembly involved in mitosis|protein amino acid phosphorylation involved in mitotic spindle assembly|protein amino acid phosphorylation involved in spindle assembly involved in mitosis https://github.com/geneontology/go-ontology/issues/14137 This term has been obsoleted because it represents a GO-CAM model. rb 2015-07-16T18:36:05Z True biological_process owl:Class GO:0075167 biolink:NamedThing obsolete negative regulation of G-protein gamma subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont G-protein gamma subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont G-protein gamma subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0035961 biolink:NamedThing obsolete positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of ergosterol biosynthesis by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of ergosterol biosynthesis by up-regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthetic process by stimulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol anabolism by up regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthesis by positive regulation of transcription from Pol II promoter|positive regulation of ergosterol synthesis by positive regulation of transcription from Pol II promoter|positive regulation of ergosterol anabolism by positive regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol synthesis by up-regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthetic process by up regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol formation by upregulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthetic process by activation of transcription from RNA polymerase II promoter|positive regulation of ergosterol synthesis by upregulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthesis by up regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol anabolism by positive regulation of transcription from Pol II promoter|positive regulation of ergosterol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol synthesis by up regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol formation by up regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol anabolism by upregulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthetic process by up-regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol anabolism by up-regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthetic process by positive regulation of transcription from Pol II promoter|positive regulation of ergosterol formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol formation by positive regulation of transcription from Pol II promoter|positive regulation of ergosterol biosynthetic process by upregulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol formation by up-regulation of transcription from RNA polymerase II promoter|positive regulation of ergosterol biosynthesis by upregulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0000094 biolink:NamedThing obsolete septin assembly and septum formation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl septin assembly and septum formation This term was made obsolete because it was not defined and the string name implied two separate processes. GO:0000917|GO:0000921|GO:0000918 True biological_process owl:Class GO:0035417 biolink:NamedThing obsolete negative regulation of mitotic prometaphase OBSOLETE. Any process that stops, prevents or reduces the rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. tmpzr1t_l9r_go_relaxed.owl negative regulation of mitotic prometaphase This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. bf 2010-03-29T10:53:42Z True biological_process owl:Class GO:1990492 biolink:NamedThing obsolete mitotic cell cycle checkpoint inhibiting CAR assembly OBSOLETE. A Mad2-dependent mitotic cell cycle checkpoint which delays cytokinetic actinomycin ring assembly if there is a delay in early M-phase. tmpzr1t_l9r_go_relaxed.owl Mad2-dependent mitotic cell cycle checkpoint|mitotic cell cycle checkpoint inhibiting cytokinetic actomyosin ring assembly This term was obsoleted because it does not represent a specific process. vw 2014-09-23T12:43:22Z True biological_process owl:Class GO:1990912 biolink:NamedThing obsolete response to microwave radiation OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microwave radiation stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-12-07T21:25:08Z True biological_process owl:Class GO:0016912 biolink:NamedThing obsolete SAP kinase 5 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl SAP kinase 5 activity|SAPK5 This term was made obsolete because there are no known gene products that would be described as 'SAP kinase 5', and the term name implies that it refers to a gene product. GO:0004674|GO:0007254 True molecular_function owl:Class GO:0100066 biolink:NamedThing obsolete negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0015442 biolink:NamedThing obsolete hydrogen-/sodium-translocating ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + (Na+ or H+)(in) = ADP + phosphate + (Na+ or H+)(out). tmpzr1t_l9r_go_relaxed.owl hydrogen-/sodium-translocating ATPase activity|proton-/sodium-translocating ATPase activity This term was made obsolete because it is a redundant grouping term based on a TC-DB classification. GO:0008554|GO:0008553 True molecular_function owl:Class GO:0000108 biolink:NamedThing obsolete repairosome OBSOLETE. A stable complex of proteins that carry out the DNA damage recognition and incision reactions characteristic of nucleotide excision repair (NER), such as DNA damage recognition, DNA helix unwinding, and endonucleolytic cleavage at sites flanking damaged DNA; includes TFIIH subunits and additional polypeptides; may form in the absence of DNA damage. tmpzr1t_l9r_go_relaxed.owl repairosome GO:0000109 This term was made obsolete because 'repairosome' has fallen out of use in the literature, and the large complex described in the definition has not been confirmed to exist. The term has also confused annotators. True cellular_component owl:Class GO:0005533 biolink:NamedThing obsolete N-acetylgalactosamine lectin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl N-acetylgalactosamine lectin This term was made obsolete because it refers to a class of gene products. GO:0046871|GO:0007157 True molecular_function owl:Class GO:0071531 biolink:NamedThing obsolete Rel homology domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a Rel homology domain (RHD) interaction. tmpzr1t_l9r_go_relaxed.owl RHD domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T02:16:39Z True biological_process owl:Class GO:0090146 biolink:NamedThing obsolete establishment of mitochondrion localization involved in mitochondrial fission OBSOLETE. The directed movement of mitochondria to the correct region of the cell that contributes to the process of mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl mitochondrial localization involved in mitochondrial fission|establishment of mitochondrion localisation involved in mitochondrial fission https://github.com/geneontology/go-ontology/issues/18417 This term was obsoleted because it represented a phenotype. GO:0000266|GO:0000002 tb 2009-12-08T02:53:15Z True biological_process owl:Class GO:0031939 biolink:NamedThing obsolete negative regulation of chromatin silencing at telomere OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing at telomeres. tmpzr1t_l9r_go_relaxed.owl down regulation of chromatin silencing at telomere|down-regulation of chromatin silencing at telomere|negative regulation of heterochromatic silencing at telomere|inhibition of chromatin silencing at telomere|downregulation of chromatin silencing at telomere https://github.com/geneontology/go-ontology/issues/22027 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. True biological_process owl:Class GO:0046609 biolink:NamedThing obsolete voltage-gated sulfate antiporter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + solute(in) = solute(in) + sulfate(out), by a channel in a cell membrane whose opening is governed by the membrane potential. tmpzr1t_l9r_go_relaxed.owl voltage-dependent sulfate antiporter activity|voltage gated sulfate antiporter activity|voltage-sensitive sulphate antiporter activity|prestin|voltage-sensitive sulfate antiporter activity This term was obsoleted because there is no evidence that this function exists. True molecular_function owl:Class GO:0052116 biolink:NamedThing obsolete chemotaxis in host environment OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl chemotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0075301 biolink:NamedThing obsolete cell differentiation involved in spore germination OBSOLETE. The process in which a relatively unspecialized cell acquires specialized features of a specific cell type occurring during spore germination, the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it describes a process that doesn't exist. True biological_process owl:Class GO:0003683 biolink:NamedThing obsolete lamin/chromatin binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lamin/chromatin binding This term was made obsolete because it represents two functions. GO:0005521|GO:0003682 True molecular_function owl:Class GO:0010680 biolink:NamedThing obsolete cinnamic acid biosynthetic process involved in coumarin metabolism OBSOLETE. The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid, which is then utilized in the metabolism of coumarin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. True biological_process owl:Class GO:0045212 biolink:NamedThing obsolete neurotransmitter receptor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of neurotransmitter receptors. tmpzr1t_l9r_go_relaxed.owl neurotransmitter receptor biosynthesis|neurotransmitter receptor anabolism|neurotransmitter receptor formation|neurotransmitter receptor synthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0005803 biolink:NamedThing obsolete secretory vesicle OBSOLETE. A small subcellular vesicle, or granule, surrounded by a single-layered membrane; formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. tmpzr1t_l9r_go_relaxed.owl secretory vesicle|transition vesicle This term was made obsolete because it was being used to describe two different components. GO:0030141|GO:0030133 True cellular_component owl:Class RO:0002565 biolink:NamedThing results in movement of tmpzr1t_l9r_go_relaxed.owl RO:0002565 external results_in_movement_of GO:0060146 biolink:NamedThing obsolete host gene silencing in virus induced gene silencing OBSOLETE. The posttranscriptional gene silencing of host genes that are homologous to viral genes after viral infection. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19958 The reason for obsoletion is there there is no evidence that this process exists. True biological_process owl:Class GO:0044607 biolink:NamedThing obsolete disruption by symbiont of host endothelial cells OBSOLETE. Any process in which an organism has a negative effect on the functioning of the host's endothelial cells. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because the cell type should be captured as an annotation extension. jl 2012-05-30T02:24:50Z True biological_process owl:Class GO:0001029 biolink:NamedThing obsolete RNA polymerase III type 3 promoter TFIIIB-type transcription factor activity OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 3 promoter by SNAP-type and TFIIIC-type factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 3 promoter polymerase recruiting transcription factor activity krc 2010-08-23T12:52:40Z True molecular_function owl:Class GO:0015176 biolink:NamedThing obsolete holin OBSOLETE. Primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall of bacteria, where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some catalyze export of nucleases. tmpzr1t_l9r_go_relaxed.owl holin This term was made obsolete because it represents a class of gene products. GO:0019835 True molecular_function owl:Class GO:1903289 biolink:NamedThing obsolete regulation of ATP catabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of ATP catabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of ATP breakdown|regulation of ATP degradation|regulation of ATP catabolism|regulation of ATP hydrolysis The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0043462 rl 2014-08-11T14:36:39Z True biological_process owl:Class GO:0045749 biolink:NamedThing obsolete negative regulation of S phase of mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of S phase of mitotic cell cycle activity. tmpzr1t_l9r_go_relaxed.owl inhibition of S phase of mitotic cell cycle|downregulation of S phase of mitotic cell cycle|down regulation of S phase of mitotic cell cycle|negative regulation of S phase of mitotic cell cycle|down-regulation of S phase of mitotic cell cycle|negative regulation of S-phase of mitotic cell cycle This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. True biological_process owl:Class GO:0006459 biolink:NamedThing obsolete binding unfolded ER proteins OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl binding unfolded ER proteins This term was made obsolete because it represents a function rather than a process. GO:0051082|GO:0005783 True biological_process owl:Class GO:0052437 biolink:NamedThing obsolete modulation by organism of defense-related symbiont calcium ion flux OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of calcium ion fluxes as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont Ca2+ flux|modulation by organism of defense-related symbiont calcium ion flux This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0008002 biolink:NamedThing obsolete lamina lucida OBSOLETE. The electron-lucent layer of the basal lamina adjacent to the basal plasma membrane of the cells that rest on the lamina. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Lamina_lucida This term was made obsolete because it is thought to be an experimental artefact. True cellular_component owl:Class GO:0052410 biolink:NamedThing obsolete metabolism by host of symbiont cell wall chitin OBSOLETE. The chemical reactions and pathways performed by an organism involving chitin in the cell wall of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1902331 biolink:NamedThing obsolete DNA strand elongation involved in bacterial-type DNA replication OBSOLETE. Any DNA strand elongation that is involved in bacterial-type DNA replication. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a distinct function from its parent, DNA strand elongation involved in DNA replication. jl 2013-07-25T10:48:26Z True biological_process owl:Class GO:0005321 biolink:NamedThing obsolete high-density lipoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl HDL|high-density lipoprotein GO:0005319 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:0019269 biolink:NamedThing obsolete glutamate biosynthetic process, using glutamate synthase (NADPH) OBSOLETE. The chemical reactions and pathways resulting in the formation of glutamate, catalyzed by the enzyme glutamate synthase (NADPH). tmpzr1t_l9r_go_relaxed.owl glutamate formation, using glutamate synthase (NADPH)|glutamate synthesis, using glutamate synthase (NADPH)|glutamate anabolism, using glutamate synthase (NADPH)|glutamate biosynthetic process, using glutamate synthase (NADPH) This term was made obsolete because it refers to a molecular function. GO:0004355|GO:0006537 True biological_process owl:Class GO:0050027 biolink:NamedThing obsolete L-idonate 2-dehydrogenase activity OBSOLETE. Catalysis of the reaction: L-idonate + NADP+ = 5-dehydro-D-gluconate + NADPH. tmpzr1t_l9r_go_relaxed.owl 5KGR|L-idonate 2-dehydrogenase activity|L-idonate:NADP+ 2-oxidoreductase activity|5-ketoglucono-idono-reductase activity|5-keto-D-gluconate 2-reductase activity|reductase, 5-ketogluconate 5- (L-idonate-forming)|5-ketogluconate 2-reductase activity|L-idonate dehydrogenase activity MetaCyc:L-IDONATE-2-DEHYDROGENASE-RXN|EC:1.1.1.128|RHEA:21176 This term was made obsolete because EC:1.1.1.128 was deleted: the reaction described is covered by EC:1.1.1.264. GO:0050572 True molecular_function owl:Class GO:0004217 biolink:NamedThing obsolete cathepsin L activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity close to that of papain. As compared to cathepsin B, cathepsin L exhibits higher activity towards protein substrates, but has little activity on Z-Arg-Arg-NHMec, and no peptidyl-dipeptidase activity. tmpzr1t_l9r_go_relaxed.owl cathepsin L activity|Aldrichina grahami cysteine proteinase GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1900621 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling OBSOLETE. Calcium-mediated signaling that results in regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter, global by calcium-mediated signaling|regulation of global transcription from Pol II promoter by calcium-mediated signaling|regulation of transcription from Pol II promoter by calcium-mediated signaling|regulation of gene-specific transcription from RNA polymerase II promoter by calcium-mediated signaling This term was obsoleted because it represents a GO-CAM model. GO:0019722|GO:0006357 bf 2012-05-18T01:00:39Z True biological_process owl:Class GO:1990278 biolink:NamedThing obsolete positive regulation of MBF transcription factor activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of activity of the transcription factor MBF. tmpzr1t_l9r_go_relaxed.owl positive regulation of MBF transcription factor activity This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-01-29T14:43:44Z True biological_process owl:Class GO:0006510 biolink:NamedThing obsolete ATP-dependent proteolysis OBSOLETE. The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP. tmpzr1t_l9r_go_relaxed.owl ATP-dependent peptidolysis|ATP-dependent proteolysis GO:0004176 This term was made obsolete because it represents a molecular function. GO:0051603|GO:0006508|GO:0016485 True biological_process owl:Class GO:1990004 biolink:NamedThing obsolete XDP phosphatase activity OBSOLETE. Catalysis of the reaction: XDP + H2O = XMP + phosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20954 This term was obsoleted because there is no evidence that this reaction exist in vivo. jl 2012-12-11T14:01:34Z True molecular_function owl:Class GO:0030063 biolink:NamedThing obsolete murein sacculus OBSOLETE. A structure formed of the cross-linked polymer peptidoglycan (also called murein) that forms a covalently closed net around a bacterial cell, and imparts structural stability to the bacterial cell wall. tmpzr1t_l9r_go_relaxed.owl peptidoglycan layer|murein sacculus This term was made obsolete because it was defined inaccurately. GO:0009276 True cellular_component owl:Class GO:0000211 biolink:NamedThing obsolete protein degradation tagging activity OBSOLETE. Covalent addition of polyubiquitin to another protein, targeting the tagged protein for destruction. tmpzr1t_l9r_go_relaxed.owl protein degradation tagging activity This term was made obsolete because it represents a biological process and a molecular function. GO:0005515|GO:0019941 True molecular_function owl:Class GO:0007397 biolink:NamedThing obsolete histogenesis and organogenesis OBSOLETE. The generation of organized tissues or of whole organs. tmpzr1t_l9r_go_relaxed.owl histogenesis and organogenesis This term was made obsolete because more appropriate terms were created. GO:0009887|GO:0009888 True biological_process owl:Class GO:0016858 biolink:NamedThing obsolete racemase and epimerase activity, acting on other compounds OBSOLETE. Racemase and epimerase activity on compounds other than amino acids, hydroxy acids, carbohydrates or their derivatives. tmpzr1t_l9r_go_relaxed.owl racemase and epimerase activity, acting on other compounds This term was made obsolete because it was an unnecessary grouping term. GO:0016854 True molecular_function owl:Class GO:1902719 biolink:NamedThing obsolete extracellular sequestering of copper ion OBSOLETE. The process of binding or confining copper ions in an extracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl extracellular sequestering of copper ion This term was obsoleted at the TermGenie Gatekeeper stage. mr 2014-02-24T16:09:09Z True biological_process owl:Class GO:0061396 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to copper ion OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to an copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0071280 dph 2012-01-10T09:07:08Z True biological_process owl:Class GO:0019023 biolink:NamedThing obsolete dsRNA viral genome OBSOLETE. A viral genome composed of double stranded RNA. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0045716 biolink:NamedThing obsolete positive regulation of low-density lipoprotein particle receptor biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors. tmpzr1t_l9r_go_relaxed.owl upregulation of low-density lipoprotein receptor biosynthetic process|up-regulation of low-density lipoprotein receptor biosynthetic process|stimulation of low-density lipoprotein receptor biosynthetic process|positive regulation of low-density lipoprotein receptor synthesis|activation of low-density lipoprotein receptor biosynthetic process|positive regulation of low-density lipoprotein receptor biosynthesis|positive regulation of low-density lipoprotein receptor anabolism|positive regulation of low-density lipoprotein receptor biosynthetic process|up regulation of low-density lipoprotein receptor biosynthetic process|positive regulation of low-density lipoprotein receptor formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0001320 biolink:NamedThing obsolete age-dependent response to reactive oxygen species involved in chronological cell aging OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring in non-dividing cells as they age as a result of reactive oxygen species, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl age-dependent response to reactive oxygen species during chronological cell ageing|age-dependent response to ROI during chronological cell aging|age-dependent response to reactive oxygen intermediate during chronological cell aging|age-dependent response to ROS during chronological cell aging|age-dependent response to AOS during chronological cell aging|age-dependent response to reactive oxygen species during chronological cell aging|age-dependent response to reactive oxidative species during chronological cell aging|age-dependent response to active oxygen species during chronological cell aging https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0044838|GO:0090398 True biological_process owl:Class GO:0015004 biolink:NamedThing obsolete small blue copper electron carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small blue copper electron carrier GO:0009055 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:1900415 biolink:NamedThing obsolete regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of fungal-type cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl regulation of chitin- and beta-glucan-containing cell wall biogenesis by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T03:42:27Z True biological_process owl:Class GO:1905783 biolink:NamedThing obsolete CENP-A containing nucleosome disassembly OBSOLETE. The disaggregation of a CENP-A containing nucleosome into its constituent components. tmpzr1t_l9r_go_relaxed.owl centromere specific nucleosome disassembly|centromere-specific nucleosome disassembly|centromeric nucleosome disassembly https://github.com/geneontology/go-ontology/issues/22133 This term was obsoleted because it did not describe a different process from that described by its parent. GO:0006337 vw 2017-01-05T09:19:07Z True biological_process owl:Class GO:0035048 biolink:NamedThing obsolete splicing factor protein import into nucleus OBSOLETE. The directed movement of a pre-mRNA splicing factor from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl splicing factor protein transport from cytoplasm to nucleus|splicing factor protein-nucleus import The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 True biological_process owl:Class GO:0015356 biolink:NamedThing obsolete monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015129|GO:0015562|GO:0015130|GO:0050833 True molecular_function owl:Class GO:0035969 biolink:NamedThing obsolete positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of sterol import by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of sterol uptake by up regulation of transcription from RNA polymerase II promoter|positive regulation of sterol import by up regulation of transcription from RNA polymerase II promoter|positive regulation of sterol uptake by upregulation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by positive regulation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by activation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by up-regulation of transcription from RNA polymerase II promoter|positive regulation of sterol import by stimulation of transcription from RNA polymerase II promoter|positive regulation of sterol import by positive regulation of transcription from Pol II promoter|positive regulation of sterol uptake by stimulation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by stimulation of transcription from RNA polymerase II promoter|positive regulation of sterol uptake by activation of transcription from RNA polymerase II promoter|positive regulation of sterol import by activation of transcription from RNA polymerase II promoter|positive regulation of sterol import by up-regulation of transcription from RNA polymerase II promoter|positive regulation of sterol import by upregulation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by up regulation of transcription from RNA polymerase II promoter|positive regulation of sterol uptake by positive regulation of transcription from RNA polymerase II promoter|positive regulation of sterol uptake by up-regulation of transcription from RNA polymerase II promoter|positive regulation of sterol influx by upregulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0051929 biolink:NamedThing obsolete positive regulation of calcium ion transport via voltage-gated calcium channel activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via the activity of voltage-gated calcium channels. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion transport via voltage gated calcium channel|upregulation of calcium ion transport via voltage gated calcium channel|up regulation of calcium ion transport via voltage gated calcium channel|positive regulation of calcium ion transport via voltage-gated calcium channel activity|activation of calcium ion transport via voltage gated calcium channel|stimulation of calcium ion transport via voltage gated calcium channel|positive regulation of calcium transport via voltage gated calcium channel This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0005245 True biological_process owl:Class GO:1905248 biolink:NamedThing obsolete regulation of memory OBSOLETE. Any process that modulates the frequency, rate or extent of memory. tmpzr1t_l9r_go_relaxed.owl modulation of memory This term was obsoleted at the TermGenie Gatekeeper stage. ha 2016-06-09T13:54:38Z True biological_process owl:Class GO:0008944 biolink:NamedThing obsolete oligopeptidase A activity OBSOLETE. Catalysis of the hydrolysis of oligopeptides, with broad specificity. Gly or Ala commonly occur as P1 or P1' residues, but more distant residues are also important, as is shown by the fact that Z-Gly-Pro-Gly-Gly-Pro-Ala is cleaved at the Gly-Gly bond, but not Z-(Gly)5. tmpzr1t_l9r_go_relaxed.owl 68000-M signalpeptide hydrolase activity|oligopeptidase A activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0019795 biolink:NamedThing obsolete nonprotein amino acid biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of any amino acid that does not normally occur as a constituent residue of proteins. tmpzr1t_l9r_go_relaxed.owl nonprotein amino acid synthesis|nonprotein amino acid formation|nonprotein amino acid biosynthetic process|nonprotein amino acid biosynthesis|nonprotein amino acid anabolism GO:0008652 This term was made obsolete because it was a grouping term that was poorly defined and did not provide a particularly meaningful grouping, since even for those amino acids commonly found in proteins, not all molecules necessarily end up incorporated into proteins. The term also violated the principle of positivity. True biological_process owl:Class GO:0016025 biolink:NamedThing obsolete proteasome endopeptidase regulator OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl proteasome endopeptidase regulator This term was made obsolete because it does not represent a molecular function. GO:0004175 True molecular_function owl:Class GO:1903247 biolink:NamedThing obsolete positive regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate OBSOLETE. Any process that activates or increases the frequency, rate or extent of adrenergic receptor signaling pathway involved in positive regulation of heart rate. tmpzr1t_l9r_go_relaxed.owl activation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|activation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|up-regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|up-regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|up regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|positive regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|up-regulation of If activation by beta-adrenergic receptor signaling pathway|up-regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|up regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|upregulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|upregulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|up regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|activation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|positive regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|upregulation of activation of funny current by beta-adrenergic receptor signaling pathway|up regulation of activation of funny current by beta-adrenergic receptor signaling pathway|up-regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|upregulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|upregulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|positive regulation of activation of funny current by beta-adrenergic receptor signaling pathway|positive regulation of If activation by beta-adrenergic receptor signaling pathway|positive regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|up-regulation of activation of funny current by beta-adrenergic receptor signaling pathway|up regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|activation of If activation by beta-adrenergic receptor signaling pathway|upregulation of If activation by beta-adrenergic receptor signaling pathway|positive regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|activation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|up-regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|up regulation of If activation by beta-adrenergic receptor signaling pathway|up regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|activation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|activation of activation of funny current by beta-adrenergic receptor signaling pathway|upregulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. rl 2014-08-04T11:54:06Z True biological_process owl:Class GO:0085018 biolink:NamedThing obsolete maintenance of symbiont-containing vacuole by host OBSOLETE. The process in which a host organism maintains the structure and function of a symbiont-containing vacuole. The symbiont-containing vacuole is a membrane-bounded vacuole within a host cell in which a symbiont organism resides, and can serve to reduce pathogenicity of invading symbionts by restricting them to the vacuolar compartment. tmpzr1t_l9r_go_relaxed.owl maintenance of vacuolar integrity during bacterial infection|maintenance of parasitophorous vacuole|maintenance of pathogen-containing vacuole https://github.com/geneontology/go-ontology/issues/21742 This term has been obsoleted because there is no evidence that this process exists. jl 2010-05-20T03:58:51Z True biological_process owl:Class GO:0051831 biolink:NamedThing obsolete growth or development in other organism during symbiotic interaction OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism. tmpzr1t_l9r_go_relaxed.owl growth or development within other organism during symbiotic interaction|invasive growth|growth or development in other organism during symbiotic interaction This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0071445 biolink:NamedThing obsolete cellular response to protein stimulus OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to protein stimulus This term was made obsolete because more specific terms exist. GO:0071218|GO:0071345|GO:0034620|GO:0071363|GO:0032870 mah 2009-12-16T04:12:04Z True biological_process owl:Class GO:0004274 biolink:NamedThing obsolete dipeptidyl-peptidase IV activity OBSOLETE. Catalysis of the release of an N-terminal dipeptide, by the hydrolysis of the Xbb-Xcc bond in Xaa-Xbb-Xcc, preferentially when Xbb is Pro, provided Xcc is neither Pro nor hydroxyproline. tmpzr1t_l9r_go_relaxed.owl DPP IV activity|dipeptidyl peptidase IV|dipeptidyl-peptidase IV activity|dipeptidyl-aminopeptidase IV|glycylprolyl dipeptidylaminopeptidase activity|X-PDAP|glycylproline aminopeptidase activity|dipeptidyl-peptide hydrolase activity|glycylprolyl aminopeptidase activity|DPP IV/CD26|post-proline dipeptidyl aminopeptidase IV activity|Gly-Pro naphthylamidase activity|Xaa-Pro-dipeptidylaminopeptidase activity|dipeptidyl aminopeptidase IV activity|pep X|lymphocyte antigen CD26|T cell triggering molecule Tp103|postproline dipeptidyl aminopeptidase IV|glycoprotein GP110|Xaa-Pro-dipeptidyl-aminopeptidase activity|amino acyl-prolyl dipeptidyl aminopeptidase activity|leukocyte antigen CD26 MetaCyc:3.4.14.5-RXN|EC:3.4.14.5 This term was made obsolete because it represents a gene product. GO:0008236|GO:0008239 True molecular_function owl:Class GO:0023020 biolink:NamedThing obsolete regulation of gene expression as a consequence of T cell signal transmission OBSOLETE. Any process that modulates the frequency, rate or extent of gene expression as a consequence of a process in which a T cell signal is released and/or conveyed from one location to another. tmpzr1t_l9r_go_relaxed.owl regulation of gene expression as a consequence of T cell signal transmission This term was made obsolete because the meaning of the term is ambiguous. GO:0023019 2010-02-16T09:30:50Z True biological_process owl:Class GO:0001128 biolink:NamedThing obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly OBSOLETE. Binding to an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to increase the frequency, rate or stability of the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC). Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal RNAP II transcription machinery. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly This term was obsoleted because it represented a mix of function and process and is not annotated consistently krc 2011-01-20T02:13:36Z True molecular_function owl:Class GO:1904546 biolink:NamedThing obsolete negative regulation of cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signaling pathway OBSOLETE. Any negative regulation of cAMP-dependent protein kinase activity that is involved in negative regulation of glucose mediated signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in down-regulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signaling pathway|negative regulation of STK22 involved in down-regulation of glucose mediated signaling pathway|negative regulation of protein kinase A activity involved in down-regulation of glucose mediated signalling|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in down regulation of glucose mediated signaling pathway|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in downregulation of glucose mediated signaling pathway|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in downregulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signaling pathway|negative regulation of PKA involved in downregulation of glucose mediated signalling|negative regulation of cyclic AMP-dependent protein kinase activity involved in inhibition of glucose mediated signaling pathway|negative regulation of PKA C involved in negative regulation of glucose mediated signalling|negative regulation of cyclic AMP-dependent protein kinase activity involved in downregulation of glucose mediated signalling|negative regulation of AMPK involved in down regulation of glucose mediated signalling|negative regulation of protein kinase A activity involved in inhibition of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in down-regulation of glucose mediated signalling|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in inhibition of glucose mediated signaling pathway|negative regulation of PKA involved in down-regulation of glucose mediated signaling pathway|negative regulation of AMPK involved in down-regulation of glucose mediated signaling pathway|negative regulation of PKA C involved in down-regulation of glucose mediated signaling pathway|negative regulation of protein kinase A activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of PKA C involved in down regulation of glucose mediated signaling pathway|negative regulation of STK22 involved in down regulation of glucose mediated signalling|negative regulation of protein kinase A activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in negative regulation of glucose mediated signalling|negative regulation of protein kinase A activity involved in inhibition of glucose mediated signalling|negative regulation of PKA involved in inhibition of glucose mediated signaling pathway|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in down regulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in negative regulation of glucose mediated signalling|negative regulation of PKA involved in inhibition of glucose mediated signalling|negative regulation of AMPK involved in inhibition of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signalling|negative regulation of STK22 involved in negative regulation of glucose mediated signaling pathway|negative regulation of PKA C involved in down regulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of PKA C involved in downregulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of AMPK involved in inhibition of glucose mediated signaling pathway|negative regulation of AMPK involved in negative regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signalling|negative regulation of PKA involved in negative regulation of glucose mediated signaling pathway|negative regulation of protein kinase A activity involved in downregulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signalling|negative regulation of AMPK involved in down-regulation of glucose mediated signalling|negative regulation of PKA involved in negative regulation of glucose mediated signalling|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of STK22 involved in downregulation of glucose mediated signaling pathway|negative regulation of PKA involved in down regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in inhibition of glucose mediated signaling pathway|negative regulation of AMPK involved in downregulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in downregulation of glucose mediated signalling|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in downregulation of glucose mediated signalling|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in down-regulation of glucose mediated signalling|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in down regulation of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in negative regulation of glucose mediated signalling|negative regulation of AMPK involved in down regulation of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in inhibition of glucose mediated signalling|negative regulation of protein kinase A activity involved in negative regulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signaling pathway|negative regulation of STK22 involved in inhibition of glucose mediated signalling|negative regulation of protein kinase A activity involved in down regulation of glucose mediated signalling|negative regulation of PKA C involved in inhibition of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signalling|negative regulation of STK22 involved in downregulation of glucose mediated signalling|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of PKA involved in downregulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in downregulation of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in down regulation of glucose mediated signalling|negative regulation of PKA C involved in downregulation of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in inhibition of glucose mediated signalling|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in inhibition of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in down regulation of glucose mediated signalling|negative regulation of AMPK involved in negative regulation of glucose mediated signalling|negative regulation of PKA involved in down-regulation of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of STK22 involved in inhibition of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in inhibition of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signalling|negative regulation of AMPK involved in downregulation of glucose mediated signaling pathway|negative regulation of protein kinase A activity involved in downregulation of glucose mediated signaling pathway|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in down regulation of glucose mediated signalling|negative regulation of PKA involved in down regulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signaling pathway|negative regulation of PKA C involved in down-regulation of glucose mediated signalling|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in negative regulation of glucose mediated signalling|negative regulation of STK22 involved in down-regulation of glucose mediated signalling|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signalling|negative regulation of 3',5' cAMP-dependent protein kinase activity involved in negative regulation of glucose mediated signalling|negative regulation of cyclic AMP-dependent protein kinase activity involved in downregulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase activity involved in inhibition of glucose mediated signalling|negative regulation of STK22 involved in negative regulation of glucose mediated signalling|negative regulation of PKA C involved in inhibition of glucose mediated signalling|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in downregulation of glucose mediated signaling pathway|negative regulation of STK22 involved in down regulation of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signalling|negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in inhibition of glucose mediated signalling|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in down regulation of glucose mediated signaling pathway|negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in negative regulation of glucose mediated signaling pathway|negative regulation of protein kinase A activity involved in down regulation of glucose mediated signaling pathway|negative regulation of 3',5'-cAMP-dependent protein kinase activity involved in down regulation of glucose mediated signalling|negative regulation of cyclic AMP-dependent protein kinase activity involved in down regulation of glucose mediated signaling pathway|negative regulation of cyclic AMP-dependent protein kinase activity involved in down-regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity involved in down-regulation of glucose mediated signalling|negative regulation of PKA C involved in negative regulation of glucose mediated signaling pathway|negative regulation of cAMP-dependent protein kinase activity involved in downregulation of glucose mediated signaling pathway This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-08-12T09:48:46Z True biological_process owl:Class GO:0008471 biolink:NamedThing obsolete laccase activity OBSOLETE. Catalysis of the reaction: 4 benzenediol + O2 = 4 benzosemiquinone + 2 H2O. tmpzr1t_l9r_go_relaxed.owl urushiol oxidase activity|urishiol oxidase activity|p-diphenol oxidase activity|benzenediol:oxygen oxidoreductase activity|laccase activity GO:0016682 True molecular_function owl:Class GO:0008634 biolink:NamedThing obsolete negative regulation of survival gene product expression OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level. tmpzr1t_l9r_go_relaxed.owl negative regulation of survival gene product activity|inhibition of survival gene product activity|negative regulation of survival gene product expression|down regulation of survival gene product activity|down-regulation of survival gene product activity|negative regulation of survival gene products|downregulation of survival gene product activity This term was made obsolete because the meaning of the term is ambiguous: the same gene product may or may not have a role in apoptosis depending on the cell type, tissue type, condition, etc. True biological_process owl:Class GO:1902537 biolink:NamedThing obsolete multi-organism pinocytosis OBSOLETE. A pinocytosis which involves another organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. jl 2013-12-02T14:14:46Z True biological_process owl:Class GO:0051927 biolink:NamedThing obsolete negative regulation of calcium ion transport via voltage-gated calcium channel activity OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl negative regulation of calcium ion transport via voltage-gated calcium channel activity|downregulation of calcium ion transport via voltage gated calcium channel|down-regulation of calcium ion transport via voltage gated calcium channel|negative regulation of calcium transport via voltage gated calcium channel|down regulation of calcium ion transport via voltage gated calcium channel|inhibition of calcium ion transport via voltage gated calcium channel This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0005245 True biological_process owl:Class GO:0042954 biolink:NamedThing obsolete lipoprotein transporter activity OBSOLETE. Enables the directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17004 The reason for obsoletion is this term has been incorrectly used. True molecular_function owl:Class GO:0009005 biolink:NamedThing obsolete signal peptidase II activity OBSOLETE. Catalysis of the cleavage of N-terminal leader sequences from membrane prolipoproteins. Hydrolyzes the terminal bond of Xaa-Xbb-Xbb-Cys, in which Xaa is hydrophobic (preferably Leu), Xbb is often Ser or Ala, Xcc is often Gly or Ala, and the Cys is alkylated on sulfur with a diacylglyceryl group. tmpzr1t_l9r_go_relaxed.owl premurein leader proteinase activity|SPase II activity|signal peptidase II activity|prolipoprotein-signal peptidase activity|lipoprotein signal peptidase activity|prolipoprotein signal peptidase activity|premurein-leader peptidase activity|leader peptidase II GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0033664 biolink:NamedThing obsolete positive regulation by symbiont of host defense-related protein level OBSOLETE. Any process in which the symbiont activates, maintains or increases levels of defense-related proteins in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. True biological_process owl:Class GO:0046238 biolink:NamedThing obsolete phthalate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of phthalate, any ester or salt of phthalic acid. tmpzr1t_l9r_go_relaxed.owl phthalate biosynthesis|phthalate synthesis|phthalate formation|phthalate biosynthetic process|phthalate anabolism GO:0018963 This term was made obsolete because phthalates are not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0001084 biolink:NamedThing obsolete transcription factor activity, TFIID-class binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIID-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. GO:0001094 krc 2010-10-27T04:15:22Z True molecular_function owl:Class GO:0000204 biolink:NamedThing obsolete activation of MAPKK during sporulation (sensu Saccharomyces) OBSOLETE. Upregulation of a MAP kinase kinase in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl activation of MAPKK during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0042980 biolink:NamedThing obsolete cystic fibrosis transmembrane conductance regulator binding OBSOLETE. Binding to a Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein. tmpzr1t_l9r_go_relaxed.owl CFTR binding|cystic fibrosis transmembrane conductance regulator binding GO:0044325 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0046259 biolink:NamedThing obsolete trinitrotoluene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of trinitrotoluene, a methylated benzene molecule with three NO2 groups attached to it. tmpzr1t_l9r_go_relaxed.owl trinitrotoluene biosynthesis|trinitrotoluene biosynthetic process|trinitrotoluene formation|trinitrotoluene synthesis|trinitrotoluene anabolism GO:0018973 This term was made obsolete because trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:1900402 biolink:NamedThing obsolete regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of carbohydrate metabolic process. tmpzr1t_l9r_go_relaxed.owl regulation of carbohydrate metabolism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T02:45:27Z True biological_process owl:Class GO:0052375 biolink:NamedThing obsolete evasion or tolerance by organism of symbiont-produced nitric oxide OBSOLETE. The process by which an organism avoids the effects of nitric oxide produced as a defense response by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl evasion or tolerance by organism of symbiont NO|evasion or tolerance by organism of symbiont-produced nitric oxide|evasion or tolerance by organism of symbiont nitric oxide|evasion or tolerance of NO produced by symbiont in response to organism|evasion or tolerance by organism of symbiont-produced NO|evasion or tolerance of nitric oxide produced by symbiont in response to organism This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class RO:0002341 biolink:NamedThing results in transport along tmpzr1t_l9r_go_relaxed.owl RO:0002341 external results_in_transport_along GO:1905452 biolink:NamedThing obsolete canonical Wnt signaling pathway involved in regulation of stem cell proliferation OBSOLETE. Any canonical Wnt signaling pathway that is involved in regulation of stem cell proliferation. tmpzr1t_l9r_go_relaxed.owl Wnt receptor signalling pathway through beta-catenin involved in regulation of stem cell proliferation|canonical Wnt receptor signaling pathway involved in regulation of stem cell proliferation|frizzled-1 receptor signaling pathway involved in regulation of stem cell proliferation|canonical Wnt-activated signaling pathway involved in regulation of stem cell proliferation|Wnt receptor signaling pathway through beta-catenin involved in regulation of stem cell proliferation|Wnt receptor signaling pathway via beta-catenin involved in regulation of stem cell proliferation This term was obsoleted at the TermGenie Gatekeeper stage. bc 2016-09-16T11:52:42Z True biological_process owl:Class GO:0010926 biolink:NamedThing obsolete anatomical structure formation OBSOLETE. The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structure is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. tmpzr1t_l9r_go_relaxed.owl anatomical structure formation The reason for obsoletion is that the term is confusing - it sounds developmental and has a developmental sounding def, but it is not a child of developmental process and its children included 'cellular component assembly'. The term was created to group together 'cellular component assembly' and 'anatomical structure formation involved in morphogenesis', but we no longer feel that this grouping is useful. GO:0048646|GO:0022607 True biological_process owl:Class GO:0005039 biolink:NamedThing obsolete death receptor-associated factor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl death receptor-associated factor activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005515|GO:0005123 True molecular_function owl:Class RO:0002591 biolink:NamedThing results in remodeling of tmpzr1t_l9r_go_relaxed.owl RO:0002591 external results_in_remodeling_of GO:0000174 biolink:NamedThing obsolete inactivation of MAPK (mating sensu Saccharomyces) OBSOLETE. Downregulation of MAP kinase activity in the context of transduction of mating pheromone signal, as described for Saccharomyces. tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK (mating sensu Saccharomyces) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0006371 biolink:NamedThing obsolete mRNA splicing OBSOLETE. The process in which excision of introns from the primary transcript of messenger RNA (mRNA) is followed by ligation of the two exon termini exposed by removal of each intron, so that mRNA consisting only of the joined exons is produced. tmpzr1t_l9r_go_relaxed.owl mRNA splicing This term was made obsolete because it represents several different processes. GO:0000398|GO:0000374|GO:0000394|GO:0000372|GO:0000373 True biological_process owl:Class GO:0051184 biolink:NamedThing obsolete cofactor transmembrane transporter activity OBSOLETE. Enables the transfer of a cofactor from one side of a membrane to the other. A cofactor is a substance that is required for the activity of an enzyme or other protein. tmpzr1t_l9r_go_relaxed.owl vitamin or cofactor transporter activity|cofactor transporter activity 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a cofactor. True molecular_function owl:Class GO:1900008 biolink:NamedThing obsolete negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of extrachromosomal rDNA circle accumulation involved in replicative cell aging. tmpzr1t_l9r_go_relaxed.owl down regulation of extrachromosomal rDNA circle accumulation during replicative cell aging|down regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing|negative regulation of extrachromosomal rDNA circle accumulation during replicative cell aging|negative regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing|negative regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging|down regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging|down regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. se 2012-01-09T10:44:10Z True biological_process owl:Class GO:0036251 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to salt stress OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0071472|GO:0045944 bf 2012-06-12T11:38:22Z True biological_process owl:Class GO:0072421 biolink:NamedThing obsolete detection of DNA damage stimulus involved in DNA damage checkpoint OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to a DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl DNA damage checkpoint sensor process|DNA damage checkpoint sensor mechanism|sensing involved in DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:16:04Z True biological_process owl:Class GO:0071508 biolink:NamedThing obsolete activation of MAPK activity involved in conjugation with cellular fusion OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl conjugation with cellular fusion, activation of MAPK activity|activation of MAPK activity involved in mating response https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. mah 2010-01-05T02:09:35Z True biological_process owl:Class GO:0090145 biolink:NamedThing obsolete mitochondrial nucleoid organization involved in mitochondrial fission OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial nucleoid that contributes to mitochondrial division. tmpzr1t_l9r_go_relaxed.owl mitochondrial nucleoid organisation involved in mitochondrial fission https://github.com/geneontology/go-ontology/issues/18417 This term was obsoleted because it represented a phenotype. GO:0000266|GO:0000002 tb 2009-12-08T02:39:34Z True biological_process owl:Class GO:0009472 biolink:NamedThing obsolete cytochrome c3 (tetraheme) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytochrome c3 (tetraheme) This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0019446 biolink:NamedThing obsolete tyrosine catabolic process to phosphoenolpyruvate OBSOLETE. The chemical reactions and pathways resulting in the breakdown of tyrosine into other compounds, including phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl tyrosine breakdown to phosphoenolpyruvate|tyrosine degradation to phosphoenolpyruvate The reason for obsoletion is that there is no evidence that this is a real process. True biological_process owl:Class GO:0030019 biolink:NamedThing obsolete tryptase activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Xaa, Lys-Xaa, but with more restricted specificity than trypsin. tmpzr1t_l9r_go_relaxed.owl tryptase activity|pituitary tryptase activity|mast cell serine proteinase tryptase activity|mast cell serine proteinase II|mast cell protease II activity|lung tryptase activity|skin tryptase activity|mast cell tryptase activity|rat mast cell protease II|mast cell proteinase II|mast cell neutral proteinase activity|tryptase M GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1903992 biolink:NamedThing obsolete regulation of protein stabilization OBSOLETE. Any process that modulates the frequency, rate or extent of protein stabilization. tmpzr1t_l9r_go_relaxed.owl regulation of protein stabilization|regulation of lysosomal protein stabilization|regulation of positive regulation of protein stability|regulation of protein sequestering|regulation of protein stabilization activity This term was made obsolete because it was created in error. GO:0031647 pga 2015-03-05T13:32:49Z True biological_process owl:Class GO:2000531 biolink:NamedThing obsolete regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of the biosynthesis of fatty acids, by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. dph 2011-03-24T12:18:33Z True biological_process owl:Class GO:0005012 biolink:NamedThing obsolete Neu/ErbB-2 receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Neu/ErbB-2 receptor activity This term was made obsolete because it represents a class of receptor rather than an activity. GO:0043125 True molecular_function owl:Class GO:0038069 biolink:NamedThing obsolete MAP kinase phosphatase activity involved in regulation of cell wall biogenesis OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that contributes to cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl Mpk1 phosphatase activity|Slt2 phosphatase activity This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-25T03:38:58Z True molecular_function owl:Class GO:0052504 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont callose deposition OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of callose deposition by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related papilla formation in symbiont|positive regulation by organism of defense-related symbiont callose deposition|induction by organism of defense-related symbiont callose deposition|induction by organism of defense-related papilla formation in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052520 biolink:NamedThing obsolete positive regulation by organism of nutrient release from other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the release of nutrients from a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of nutrient release from other organism during symbiotic interaction|positive regulation by organism of nutrient release from other organism during symbiotic interaction|upregulation by organism of nutrient release from other organism during symbiotic interaction|stimulation by organism of nutrient release from other organism during symbiotic interaction|promotion of nutrient release from other organism|up regulation by organism of nutrient release from other organism during symbiotic interaction|up-regulation by organism of nutrient release from other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:1902032 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in response to osmotic stress OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in response to osmotic stress. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter involved in response to osmotic stress|regulation of gene-specific transcription from RNA polymerase II promoter involved in response to osmotic stress|global transcription regulation from Pol II promoter involved in response to osmotic stress|regulation of gene-specific transcription from RNA polymerase II promoter involved in osmotic stress response|regulation of global transcription from Pol II promoter involved in response to osmotic stress|regulation of transcription from RNA polymerase II promoter involved in osmotic response|regulation of transcription from RNA polymerase II promoter, global involved in osmotic stress response|regulation of transcription from Pol II promoter involved in osmotic stress response|regulation of transcription from RNA polymerase II promoter, global involved in osmotic response|regulation of transcription from RNA polymerase II promoter involved in osmotic stress response|regulation of global transcription from Pol II promoter involved in osmotic stress response|regulation of transcription from Pol II promoter involved in osmotic response|regulation of transcription from RNA polymerase II promoter, global involved in response to osmotic stress|global transcription regulation from Pol II promoter involved in osmotic stress response|global transcription regulation from Pol II promoter involved in osmotic response|regulation of transcription from Pol II promoter involved in response to osmotic stress|regulation of gene-specific transcription from RNA polymerase II promoter involved in osmotic response|regulation of global transcription from Pol II promoter involved in osmotic response This term was obsoleted at the TermGenie Gatekeeper stage. GO:0006970|GO:0006357 kmv 2013-04-01T17:24:04Z True biological_process owl:Class GO:0097606 biolink:NamedThing obsolete positive regulation of nuclear envelope permeability OBSOLETE. Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl positive regulation of nuclear membrane permeability The reason for obsoletion is that the nuclear envelope is quite permeable, so there is no cellular process to regulate it. pr 2014-05-14T15:43:06Z True biological_process owl:Class GO:0006373 biolink:NamedThing obsolete 3'-splice site cleavage, exon ligation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl 3'-splice site cleavage, exon ligation This term was made obsolete because it represents a molecular function. GO:0000386|GO:0000393|GO:0000388 True biological_process owl:Class GO:0071533 biolink:NamedThing obsolete ankyrin repeat-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an ankyrin repeat interaction. tmpzr1t_l9r_go_relaxed.owl ANK repeat-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T02:27:56Z True biological_process owl:Class GO:0016678 biolink:NamedThing obsolete oxidoreductase activity, acting on heme group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces an acceptor other than a nitrogenous group or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on heme group of donors, other acceptors|oxidoreductase activity, acting on haem group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016675 True molecular_function owl:Class GO:0075101 biolink:NamedThing obsolete negative regulation by host of symbiont protein kinase-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of protein kinase-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0007069 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase I promoter during mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase I promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl downregulation of transcription from RNA polymerase I promoter during mitosis|down regulation of transcription from RNA polymerase I promoter during mitosis|negative regulation of transcription from Pol I promoter during mitosis|inhibition of transcription from RNA polymerase I promoter during mitosis|negative regulation of transcription from RNA polymerase I promoter, mitotic|down-regulation of transcription from RNA polymerase I promoter during mitosis|mitotic repression of transcription from Pol I promoter https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0016479|GO:0044772 True biological_process owl:Class GO:0031277 biolink:NamedThing obsolete positive regulation of lateral pseudopodium assembly OBSOLETE. Any process that activates or increases the frequency, rate or extent of the assembly of pseudopodia from the lateral side of the cell. tmpzr1t_l9r_go_relaxed.owl positive regulation of lateral pseudopodium formation|up regulation of lateral pseudopodium formation|stimulation of lateral pseudopodium formation|activation of lateral pseudopodium formation|up-regulation of lateral pseudopodium formation|upregulation of lateral pseudopodium formation https://github.com/geneontology/go-ontology/issues/21738 The regulation of lateral pseudopodium assembly terms were not used consistently. The negative regulation term has been replaced by GO:0120320 lateral pseudopodium retraction. True biological_process owl:Class GO:0075169 biolink:NamedThing obsolete positive regulation of symbiont protein kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1903159 biolink:NamedThing obsolete malate transmembrane transporter activity involved in malate import into cell OBSOLETE. Any malate transmembrane transporter activity that is involved in malate import into cell. tmpzr1t_l9r_go_relaxed.owl malate transmembrane transporter activity involved in malate import into cell|dicarboxylate (succinate/fumarate/malate) antiporter activity involved in malate import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:27Z True molecular_function owl:Class GO:0061741 biolink:NamedThing obsolete chaperone-mediated protein transport involved in chaperone-mediated autophagy OBSOLETE. The chaperone-mediated protein transport process in which a protein that is bound to a chaperone and a lysosomal receptor is unfolded and transported into the lysosome as part of chaperone-mediated autophagy. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20850 This term was obsoleted because it represents a function within a process. dph 2015-10-21T08:56:33Z True biological_process owl:Class GO:0090007 biolink:NamedThing obsolete regulation of mitotic anaphase OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic anaphase, a cell cycle process comprising the steps by which a cell progresses through anaphase, the stage of mitosis during which the two sets of chromosomes separate and move away from each other. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic anaphase This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. tb 2009-07-17T01:08:58Z True biological_process owl:Class GO:0004428 biolink:NamedThing obsolete inositol or phosphatidylinositol kinase activity OBSOLETE. Catalysis of the phosphorylation of myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl inositol or phosphatidylinositol kinase activity|inositol/phosphatidylinositol kinase activity This term was made obsolete because it is a grouping term representing two quite different sets of entities, hexose sugars and glycerophospholipids. GO:0052742|GO:0019140|GO:0052813|GO:0016307 True molecular_function owl:Class GO:0052204 biolink:NamedThing obsolete negative regulation of molecular function in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the functional activity of proteins in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein function in other organism during symbiotic interaction|inhibition of protein function in other organism during symbiotic interaction|inhibition of protein function in other organism|downregulation of protein function in other organism during symbiotic interaction|down regulation of protein function in other organism during symbiotic interaction|down-regulation of protein function in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0008319 biolink:NamedThing obsolete prenyl protein specific endopeptidase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl prenyl protein specific endopeptidase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0019011 biolink:NamedThing obsolete DNA replication accessory factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA replication accessory factor This term was made obsolete because it does not represent a true molecular function. GO:0006260 True molecular_function owl:Class GO:0047687 biolink:NamedThing obsolete ascorbate 2,3-dioxygenase activity OBSOLETE. Catalysis of the reaction: L-ascorbate + H(2)O + O(2) = L-threonate + 2 H(+) + oxalate. tmpzr1t_l9r_go_relaxed.owl ascorbate 2,3-dioxygenase activity|AAoxygenase activity|ascorbate:oxygen 2,3-oxidoreductase (bond-cleaving) MetaCyc:ASCORBATE-23-DIOXYGENASE-RXN|KEGG_REACTION:R00646|RHEA:21784 This term was made obsolete because EC:1.13.11.13 was deleted; the activity is the sum of several enzymatic and spontaneous reactions. True molecular_function owl:Class GO:0000261 biolink:NamedThing obsolete sodium-translocating V-type ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + Na+(in) = ADP + phosphate + Na+(out). Found in vacuoles of eukaryotes and in bacteria. tmpzr1t_l9r_go_relaxed.owl sodium-translocating V-type ATPase activity GO:0046962 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990561 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to copper ion starvation OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of copper ions. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0035874|GO:0006357 al 2014-11-25T14:21:55Z True biological_process owl:Class GO:0023065 biolink:NamedThing obsolete signal transmission via blood OBSOLETE. The process in which a signal is conveyed via blood. tmpzr1t_l9r_go_relaxed.owl signal transmission via blood This term was made obsolete because the meaning of the term is ambiguous. GO:0010232|GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class GO:0005209 biolink:NamedThing obsolete plasma protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl plasma protein This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:0003801 biolink:NamedThing obsolete blood coagulation factor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl blood coagulation factor activity This term was made obsolete because it refers to involvement in a biological process. GO:0004252|GO:0007596 True molecular_function owl:Class GO:0008464 biolink:NamedThing obsolete gamma-glutamyl hydrolase activity OBSOLETE. Catalysis of the cleavage of a gamma-glutamyl bond to release an unsubstituted C-terminal amino acid. tmpzr1t_l9r_go_relaxed.owl folic acid conjugase activity|pteroyl-poly-gamma-glutamate hydrolase activity|lysosomal gamma-glutamyl carboxypeptidase activity|conjugase activity|gamma-glutamyl hydrolase activity|polyglutamate hydrolase activity|gamma-Glu-X carboxypeptidase activity|poly(glutamic acid) hydrolase II|pteroylpoly-gamma-glutamyl hydrolase activity|carboxypeptidase G activity|poly(gamma-glutamic acid) endohydrolase activity|pteroyl-poly-alpha-glutamate hydrolase activity|folate conjugase activity GO:0008242 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003804 biolink:NamedThing obsolete coagulation factor Xa activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Thr and then Arg-Ile bonds in prothrombin to form thrombin, and on factor VII, which it converts to a two-chain form (factor VIIa). tmpzr1t_l9r_go_relaxed.owl blood coagulation factor X activity|plasma thromboplastin|activated Stuart-Prower factor|factor Xa|thromboplastin|activated factor X|prothrombase activity|thrombokinase activity|coagulation factor Xa activity|activated blood-coagulation factor X|autoprothrombin C|Stuart factor activity|Stuart factor|prothrombinase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0039571 biolink:NamedThing obsolete suppression by virus of host STAT1 activity by negative regulation of STAT1 tyrosine phosphorylation OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT1 (signal transducer and activator of transcription-1) activity by stopping, preventing, or reducing the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT1 protein. For example, the measles virus V protein inhibits tyrosine phosphorylation of STAT1, thereby preventing STAT1 activation. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of tyrosine phosphorylation of STAT1 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:50:38Z True biological_process owl:Class GO:0051849 biolink:NamedThing obsolete active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation OBSOLETE. Any mechanism of active immune avoidance which works by regulating the symbiont's antigen processing or presentation pathways, e.g. by blocking any stage in MHC class II presentation. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation|active immune evasion via modulation of symbiont antigen processing and presentation|active immune evasion via regulation of symbiont antigen processing or presentation|active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation pathway|active immune evasion via modulation of symbiont antigen processing/presentation This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:2000745 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase III promoter involved in smooth muscle cell differentiation OBSOLETE. Any positive regulation of transcription from RNA polymerase III promoter that is involved in smooth muscle cell differentiation. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase III promoter involved in smooth muscle cell differentiation|stimulation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|positive regulation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|up regulation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|upregulation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation|up-regulation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|positive regulation of transcription from Pol III promoter of smooth muscle cell differentiation|activation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|positive regulation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation|up regulation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation|upregulation of transcription from RNA polymerase III promoter of smooth muscle cell differentiation|up-regulation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation|activation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation|positive regulation of transcription from Pol III promoter of nonstriated muscle cell differentiation|stimulation of transcription from RNA polymerase III promoter of nonstriated muscle cell differentiation This term was made obsolete because it was added in error. GO:0051145|GO:0048665 bf 2011-06-15T10:03:19Z True biological_process owl:Class GO:0100050 biolink:NamedThing obsolete negative regulation of mating type switching by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates mating type switching. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0001688 biolink:NamedThing obsolete cytoplasmic dynein intermediate chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytoplasmic dynein intermediate chain GO:0005868 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0052015 biolink:NamedThing obsolete catabolism by symbiont of host carbohydrate OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of carbohydrate molecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host carbohydrate https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0032234 biolink:NamedThing obsolete regulation of calcium ion transport via store-operated calcium channel activity OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a store-operated calcium channel. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion transport via store-operated calcium channel activity|regulation of calcium transport via store-operated calcium channel|regulation of store-operated calcium channel activity This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0015279 True biological_process owl:Class GO:0009109 biolink:NamedThing obsolete coenzyme catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl coenzyme degradation|coenzyme and prosthetic group catabolic process|coenzyme breakdown|coenzyme catabolism|coenzyme and prosthetic group catabolism 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group catabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0075068 biolink:NamedThing obsolete growth or development of symbiont in host vascular tissue OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont in host vascular tissue This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development of symbiont in host vascular tissue ; GO:0044122' and 'growth of symbiont in host vascular tissue ; GO:0044123'. GO:0044114|GO:0051701 True biological_process owl:Class GO:0039582 biolink:NamedThing obsolete suppression by virus of host PKR activity by positive regulation of PKR nuclear localization OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity by promoting the localization of PKR in the nucleus. For example, human cytomegalovirus (HMCV) gene products directly interact with PKR and inhibit its activation by sequestering it in the nucleus, away from both its activator (cytoplasmic dsRNA) and its substrate, (eIF2alpha). tmpzr1t_l9r_go_relaxed.owl suppression by virus of host PKR activity by sequestering of PKR in nucleus|suppression by virus of host PKR activity by positive regulation of PKR localization to nucleus|suppression by virus of host PKR activity by nuclear sequestration of PKR The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf True biological_process owl:Class GO:1904110 biolink:NamedThing obsolete regulation of plus-end directed microfilament motor activity OBSOLETE. Any process that modulates the frequency, rate or extent of plus-end directed microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl regulation of barbed-end directed actin-filament motor activity|regulation of plus-end directed actin-filament motor activity|regulation of plus-end directed actin filament motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140659 kmv 2015-04-03T18:28:24Z True biological_process owl:Class GO:1904725 biolink:NamedThing obsolete TFIIB-class transcription factor binding involved in negative regulation of transcription OBSOLETE. Any TFIIB-class transcription factor binding that is involved in negative regulation of DNA-templated transcription. tmpzr1t_l9r_go_relaxed.owl TFIIB-class transcription factor binding involved in negative regulation of gene-specific transcription|TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-templated|TFIIB-class transcription factor binding involved in downregulation of transcription, DNA-dependent|TFIIB-class transcription factor binding involved in down-regulation of gene-specific transcription|TFIIB-class transcription factor binding involved in inhibition of transcription, DNA-dependent|TFIIB-class transcription factor binding involved in inhibition of gene-specific transcription|TFIIB-class transcription factor binding involved in down regulation of transcription, DNA-dependent|TFIIB-class transcription factor binding involved in negative regulation of cellular transcription, DNA-dependent|TFIIB-class transcription factor binding involved in transcription repressor activity|TFIIB-class transcription factor binding involved in downregulation of gene-specific transcription|TFIIB-class transcription factor binding involved in down regulation of gene-specific transcription|TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-dependent|TFIIB-class transcription factor binding involved in down-regulation of transcription, DNA-dependent The reason for obsoletion is that this term represents a GO-CAM model. tb 2015-10-13T19:49:39Z True molecular_function owl:Class GO:0019059 biolink:NamedThing obsolete initiation of viral infection OBSOLETE. The set of processes involved in the start of virus infection of cells. tmpzr1t_l9r_go_relaxed.owl initiation of viral infection This term was made obsolete because it is ambiguous, and more specific terms have been created. GO:0046718 True biological_process owl:Class GO:0016329 biolink:NamedThing obsolete apoptosis regulator activity OBSOLETE. The function held by products which directly regulate any step in the process of apoptosis. tmpzr1t_l9r_go_relaxed.owl apoptosis regulator activity GO:0042981 This term was made obsolete because it represents involvement in a biological process. True molecular_function owl:Class GO:0042408 biolink:NamedThing obsolete myrcene/(E)-beta-ocimene synthase activity OBSOLETE. Catalysis of the conversion of geranyl diphosphate (GPP) into the acyclic monoterpenes beta-myrcene, (E)-beta-ocimene, and other minor cyclic monoterpenes. tmpzr1t_l9r_go_relaxed.owl myrcene/(E)-beta-ocimene synthase activity|myrcene/ocimene synthase activity EC:4.6.-.- This term was made obsolete because it represents two activities. True molecular_function owl:Class GO:0046024 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase III promoter during mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase III that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl stimulation of transcription from RNA polymerase III promoter during mitosis|positive regulation of transcription from Pol III promoter during mitosis|up regulation of transcription from RNA polymerase III promoter during mitosis|positive regulation of transcription from RNA polymerase III promoter, mitotic|activation of transcription from RNA polymerase III promoter during mitosis|mitotic activation of transcription from Pol III promoter|upregulation of transcription from RNA polymerase III promoter during mitosis|up-regulation of transcription from RNA polymerase III promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0045945|GO:0044772 True biological_process owl:Class GO:1903079 biolink:NamedThing obsolete negative regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape OBSOLETE. Any negative regulation of protein localization to cell tip that is involved in positive regulation of establishment of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl down regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|down regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|inhibition of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|downregulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|down-regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|negative regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|down-regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|downregulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|inhibition of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|negative regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape This term was obsoleted at the TermGenie Gatekeeper stage. vw 2014-05-29T17:42:24Z True biological_process owl:Class GO:1903616 biolink:NamedThing obsolete MAPK cascade involved in axon regeneration OBSOLETE. Any MAPK cascade that is involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl MAP kinase kinase kinase cascade involved in axon regeneration|MAPK signalling involved in axon regeneration|MAPKKK cascade involved in axon regeneration|MAPKKK cascade during sporulation involved in axon regeneration|mitogen-activated protein kinase cascade involved in axon regeneration|ERK/MAPK cascade involved in axon regeneration|MAPK signal transduction involved in axon regeneration|MAPK signaling involved in axon regeneration|MAP kinase cascade involved in axon regeneration https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. kmv 2014-11-18T19:11:59Z True biological_process owl:Class GO:0052379 biolink:NamedThing obsolete modulation by organism of entry into other organism via phagocytosis involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent to which it enters into a second organism via the phagocytotic processes of the other organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of entry into other organism via phagocytosis during symbiotic interaction|modulation by organism of entry into other organism via other organism phagocytosis during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0023048 biolink:NamedThing obsolete signal initiation by lipid mediator OBSOLETE. The process in which a lipid signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by lipid mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0045125|GO:0007165 2010-02-16T09:30:50Z True biological_process owl:Class GO:0021913 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in the commitment of a cell to become an interneuron in the ventral spinal cord. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0021521 True biological_process owl:Class GO:0002198 biolink:NamedThing obsolete S/G2 transition of mitotic cell cycle OBSOLETE. The transition from a cell in the S phase to the G2 phase. tmpzr1t_l9r_go_relaxed.owl S/G2 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. hjd 2011-11-02T10:36:58Z True biological_process owl:Class GO:0007201 biolink:NamedThing obsolete G-protein dissociation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl G-protein dissociation This term was made obsolete because the dissociation of heterotrimeric G protein subunits is a consequence of a conformational change, which is in turn a consequence of ligand binding; it does not require multiple activities specifically to bring about. True biological_process owl:Class RO:0002216 biolink:NamedThing capable of part of tmpzr1t_l9r_go_relaxed.owl RO:0002216 external capable_of_part_of GO:0051088 biolink:NamedThing obsolete PMA-inducible membrane protein ectodomain proteolysis OBSOLETE. The proteolytic cleavage of transmembrane proteins and release of their ectodomain that occurs after induction by phorbol-12-myristate-13-acetate (PMA), a protein kinase C agonist. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19855 This term was obsoleted because it represents an assay to induce PKC. True biological_process owl:Class GO:1903161 biolink:NamedThing obsolete pantothenate transmembrane transporter activity involved in pantothenate import into cell OBSOLETE. Any pantothenate transmembrane transporter activity that is involved in pantothenate import into cell. tmpzr1t_l9r_go_relaxed.owl pantothenate transmembrane transporter activity involved in pantothenate import into cell|vitamin B5 transmembrane transporter activity involved in pantothenate import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:38Z True molecular_function owl:Class GO:0015484 biolink:NamedThing obsolete hemolysin activity OBSOLETE. Any substance that causes the lysis of red blood cells. tmpzr1t_l9r_go_relaxed.owl hemolysin activity This term was made obsolete because it represents a gene product. GO:0019836 True molecular_function owl:Class GO:0003762 biolink:NamedThing obsolete histone-specific chaperone activity OBSOLETE. Assists in chromatin assembly by chaperoning histones on to replicating DNA, but is not a component of the assembled nucleosome when performing its normal biological function. tmpzr1t_l9r_go_relaxed.owl histone-specific chaperone activity|nucleosome assembly chaperone This term was made obsolete because it represents a class of gene products and a biological process rather than a molecular function. GO:0034728|GO:0043486|GO:0051082|GO:0042393|GO:0044183|GO:0006333|GO:0006334 True molecular_function owl:Class GO:0090413 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process OBSOLETE. Any negative regulation of transcription from RNA polymerase II promoter that is involved in fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process GO:0000122 tb 2011-09-01T03:10:41Z True biological_process owl:Class GO:0100019 biolink:NamedThing obsolete regulation of cAMP-mediated signaling by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cAMP-mediated signaling. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14279 The reason for obsoletion is that cAMP-mediated signaling is not mediated by transcription from RNA polII promoter. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0005649 biolink:NamedThing obsolete transportin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transportin|karyopherin-beta2 This term was made obsolete because it represents a single gene product and not a complex. GO:0005634|GO:0005643|GO:0005737 True cellular_component owl:Class GO:1902886 biolink:NamedThing obsolete negative regulation of proteasome-activating ATPase activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of proteasome-activating ATPase activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of ATPase involved in positive regulation of proteasomal protein catabolic process|negative regulation of proteasome channel opening activity|down regulation of proteasome channel opening activity|down-regulation of proteasome-activating ATPase activity|downregulation of ATPase involved in positive regulation of proteasomal protein catabolic process|downregulation of proteasomal ATPase activity|downregulation of proteasome channel opening activity|down regulation of proteasomal ATPase activity|down-regulation of proteasomal ATPase activity|inhibition of ATPase involved in positive regulation of proteasomal protein catabolic process|down-regulation of proteasome channel opening activity|down-regulation of proteasome channel gating activity|inhibition of proteasomal ATPase activity|down-regulation of ATPase involved in positive regulation of proteasomal protein catabolic process|down regulation of proteasome channel gating activity|downregulation of proteasome channel gating activity|negative regulation of proteasomal ATPase activity|negative regulation of proteasome channel gating activity|downregulation of proteasome-activating ATPase activity|inhibition of proteasome-activating ATPase activity|inhibition of proteasome channel opening activity|inhibition of proteasome channel gating activity|down regulation of proteasome-activating ATPase activity|down regulation of ATPase involved in positive regulation of proteasomal protein catabolic process https://github.com/geneontology/go-ontology/issues/20879 This term was obsoleted because it represents a molecular function. di 2014-04-04T17:35:30Z True biological_process owl:Class GO:0042969 biolink:NamedThing obsolete lactone transport OBSOLETE. The directed movement of lactone from one side of a membrane to the other. A lactone is a cyclic ester of a hydroxy carboxylic acid, containing a 1-oxacycloalkan-2-one structure, or an analogue having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. tmpzr1t_l9r_go_relaxed.owl This term aws obsoleted because there is no evidence for a specific pathway to transport lactone. True biological_process owl:Class GO:0018328 biolink:NamedThing obsolete enzyme active site formation via 3'-phospho-L-histidine OBSOLETE. The transient phosphorylation of peptidyl-histidine to form 3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0036 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:11168390. GO:0008256 True biological_process owl:Class GO:0045885 biolink:NamedThing obsolete positive regulation of survival gene product expression OBSOLETE. Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level. tmpzr1t_l9r_go_relaxed.owl positive regulation of survival gene product activity|activation of survival gene product activity|upregulation of survival gene product activity|positive regulation of survival gene product expression|stimulation of survival gene product activity|up-regulation of survival gene product activity|positive regulation of survival gene products|up regulation of survival gene product activity This term was made obsolete because the meaning of the term is ambiguous: the same gene product may or may not have a role in apoptosis depending on the cell type, tissue type, condition, etc. True biological_process owl:Class GO:0016975 biolink:NamedThing obsolete alpha-2 macroglobulin OBSOLETE. Inhibition of proteinase by a mechanism involving a bait region which contains specific sites, cleavage of which induces a conformational change that results in trapping of the proteinase; following cleavage in the bait region a thiolester bond is hydrolyzed and mediates the covalent binding of the protein to the proteinase; subsequently epsilon-amino groups of the proteinase react with thiolester linkages in the inhibitor to form stable amide links; the entrapped proteinase can now only act on low molecular mass substrates. tmpzr1t_l9r_go_relaxed.owl alpha-2 macroglobulin GO:0004866 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0007592 biolink:NamedThing obsolete protein-based cuticle development OBSOLETE. Synthesis and deposition of a protein-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this is found in Caenorhabditis elegans. tmpzr1t_l9r_go_relaxed.owl protein-based cuticle formation|protein-based cuticle anabolism|protein-based cuticle development|protein-based cuticle biosynthetic process|protein-based cuticle synthesis This term was made obsolete because 'protein-based cuticle' is an unnecessary grouping term. GO:0040002|GO:0040003 True biological_process owl:Class GO:1904920 biolink:NamedThing obsolete regulation of MAPK cascade involved in axon regeneration OBSOLETE. Any process that modulates the frequency, rate or extent of MAPK cascade involved in axon regeneration. tmpzr1t_l9r_go_relaxed.owl regulation of MAP kinase kinase kinase cascade involved in axon regeneration|regulation of mitogen-activated protein kinase cascade involved in axon regeneration|regulation of ERK/MAPK cascade involved in axon regeneration|regulation of MAP kinase cascade involved in axon regeneration|regulation of MAPKKK cascade involved in axon regeneration|regulation of MAPKKK cascade during sporulation involved in axon regeneration|regulation of MAPK signal transduction involved in axon regeneration|regulation of MAPK signaling involved in axon regeneration|regulation of MAPK signalling involved in axon regeneration https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. kmv 2016-01-25T17:03:35Z True biological_process owl:Class GO:0006372 biolink:NamedThing obsolete lariat formation, 5'-splice site cleavage OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lariat formation, 5'-splice site cleavage This term was made obsolete because it represents a molecular function. GO:0000386|GO:0000350 True biological_process owl:Class GO:0007251 biolink:NamedThing obsolete activation of the inhibitor of kappa kinase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of the inhibitor of kappa kinase This term was made obsolete because its meaning was unclear. GO:0007249 True biological_process owl:Class GO:0046017 biolink:NamedThing obsolete regulation of transcription from RNA polymerase I promoter during mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase I promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol I promoter during mitosis|regulation of transcription from RNA polymerase I promoter during mitosis|mitotic regulation of transcription from Pol I promoter https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0006356 True biological_process owl:Class GO:0009465 biolink:NamedThing obsolete soluble cytochrome b562 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl soluble cytochrome b562 GO:0004129 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0090019 biolink:NamedThing obsolete regulation of transcription involved in anterior neural plate formation OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the anterior neural plate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0090017|GO:0006357 tb 2009-07-29T11:38:28Z True biological_process owl:Class GO:0018853 biolink:NamedThing obsolete perillyl-CoA synthetase activity OBSOLETE. Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + ADP/AMP + mono/diphosphate + perillyl-CoA. tmpzr1t_l9r_go_relaxed.owl perillyl-CoA synthetase activity UM-BBD_reactionID:r0731|EC:6.2.1.- This term was made obsolete because it represents two reactions. GO:0052685|GO:0052686 True molecular_function owl:Class GO:0075515 biolink:NamedThing obsolete viral entry into host cell via caveolin-mediated endocytosis followed by genetic injection through the endosome membrane OBSOLETE. The uptake of a virus into a host cell that begins when material is taken up into plasma membrane caveolae which then pinch off to form endocytic caveolar carriers containing the virus. The caveolar carriers then deliver their viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by its injection through the endosome membrane. tmpzr1t_l9r_go_relaxed.owl viral entry into host cell via caveolae-mediated endocytosis followed by genetic injection through the endosome membrane|viral entry into host cell via caveolin-mediated endocytosis followed by genetic injection through the endosome membrane This term was made obsolete because it doesn't represent a genuine process. The term injection is mostly used for prokaryotic viruses where there is no endocytosis. jl 2011-07-27T02:57:55Z True biological_process owl:Class GO:1900435 biolink:NamedThing obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl down-regulation of filamentous growth of a population of unicellular organisms in response to starvation|inhibition of filamentous growth of a population of unicellular organisms in response to starvation|down regulation of filamentous growth of a population of unicellular organisms in response to starvation|downregulation of filamentous growth of a population of unicellular organisms in response to starvation This term was obsoleted because it represents a GO-CAM model. di 2012-04-25T05:54:56Z True biological_process owl:Class GO:0046299 biolink:NamedThing obsolete 2,4-dichlorophenoxyacetic acid biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds. tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorophenoxyacetic acid anabolism|2,4-dichlorophenoxyacetic acid biosynthetic process|2,4-dichlorophenoxyacetic acid biosynthesis|2,4-dichlorophenoxyacetic acid synthesis|2,4-dichlorophenoxyacetic acid formation GO:0018901 This term was made obsolete because 2,4-dichlorophenoxyacetic acid is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0001628 biolink:NamedThing obsolete gastropyloric receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPR receptor|gastropyloric receptor activity This term was made obsolete because the gastropyloric receptor is a type of neuron. True molecular_function owl:Class GO:0075166 biolink:NamedThing obsolete positive regulation of G-protein gamma subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its G-protein gamma subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont G-protein gamma subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0001153 biolink:NamedThing obsolete transcription factor activity, RNA polymerase III transcription factor recruiting OBSOLETE. The function of binding to an RNA polymerase III (RNAP III) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP III. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription factor recruiting transcription factor activity This term was made obsolete in the 2018 Transcription branch revision. This term was redundant with other terms. krc 2011-01-27T04:45:37Z True molecular_function owl:Class GO:1990639 biolink:NamedThing obsolete inositol-3,4,5-trisphosphate 5-phosphatase activity OBSOLETE. Catalysis of the reaction: D-myo-inositol 3,4,5-trisphosphate + H2O = myo-inositol 3,4-bisphosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol-3,4,5-trisphosphate 5-phosphatase activity This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-02-11T15:58:56Z True molecular_function owl:Class GO:0005573 biolink:NamedThing obsolete telomerase RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl telomerase RNA GO:0000332 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0004728 biolink:NamedThing obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. tmpzr1t_l9r_go_relaxed.owl receptor signalling protein tyrosine phosphatase activity|receptor signaling protein tyrosine phosphatase activity https://github.com/geneontology/go-ontology/issues/14232 This term was obsoleted because it was not clearly defined. True molecular_function owl:Class GO:2001220 biolink:NamedThing obsolete negative regulation of G2 phase of mitotic cell cycle OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of G2 phase of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of G2 phase of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. yaf 2011-11-17T03:28:44Z True biological_process owl:Class GO:1900546 biolink:NamedThing obsolete positive regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl up-regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter|up regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter|positive regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter|upregulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter|upregulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter|up regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter|activation of phenotypic switching by regulation of transcription from RNA polymerase II promoter|up-regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter|activation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. di 2012-05-14T11:36:05Z True biological_process owl:Class GO:0075154 biolink:NamedThing obsolete positive regulation of transmembrane receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its transmembrane receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0030181 biolink:NamedThing obsolete sodium:calcium exchange OBSOLETE. Exchange diffusion sodium and calcium ions in which influx of sodium ions to the cytosol drives the efflux of calcium ions from the cell. tmpzr1t_l9r_go_relaxed.owl sodium:calcium exchange This term was made obsolete because it represents a function rather than a process. GO:0006814|GO:0005432|GO:0006816 True biological_process owl:Class GO:0004291 biolink:NamedThing obsolete subtilisin activity OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity for peptide bonds, and a preference for a large uncharged residue in P1. Hydrolyzes peptide amides. tmpzr1t_l9r_go_relaxed.owl subtilisin S41|bioprase AL 15|subtilisin E|savinase activity|bacillopeptidase A|thermoase PC 10|savinase 4.0T|maxatase activity|protease S|ALK-enzyme|bacillus subtilis alkaline proteinase activity|protease VIII|savinase 16.0L|bacillus subtilis alkaline proteinase bioprase activity|esperase activity|SP 266|subtilopeptidase activity|subtilisin activity|savinase 32.0 L EX|subtilisin DY|savinase 8.0L|thermoase|protin A 3L|kazusase activity|alcalase 2.5L|orientase 10B|opticlean|genenase I|bacillopeptidase B|protease XXVII|subtilisin BL|bioprase APL 30|alcalase activity|superase activity|subtilisin sendai|colistinase activity|subtilisin GX|alcalase 0.6L|subtilisin J GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0017106 biolink:NamedThing obsolete activin inhibitor activity OBSOLETE. Acts to negatively regulate the activity of activin, a nonsteroidal regulator synthesized in the pituitary gland and gonads that stimulates the secretion of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl activin inhibitor activity This term was made obsolete because it refers to an obsolete molecular function term, 'activin'. GO:0098772 True molecular_function owl:Class GO:0052530 biolink:NamedThing obsolete positive regulation by organism of symbiont resistance gene-dependent defense response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the resistance gene-dependent defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense response in symbiont by specific elicitors|positive regulation by organism of symbiont resistance gene-dependent defense response|positive regulation by organism of symbiont gene-for-gene resistance|positive regulation by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0004294 biolink:NamedThing obsolete tripeptidyl-peptidase II activity OBSOLETE. Catalysis of the release of an N-terminal tripeptide from a polypeptide at neutral pH. tmpzr1t_l9r_go_relaxed.owl tripeptidyl aminopeptidase II|tripeptidyl peptidase II|tripeptidyl-peptidase II activity|TPP|tripeptidyl peptidase activity|tripeptidyl aminopeptidase activity GO:0008240 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0071428 biolink:NamedThing obsolete rRNA-containing ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex that contains ribosomal RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl rRNA-containing ribonucleoprotein complex export from cell nucleus|rRNA-containing ribonucleoprotein complex nucleus export|rRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm|rRNA-containing RNP export from nucleus https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. mah 2009-12-16T10:15:07Z True biological_process owl:Class GO:2000580 biolink:NamedThing obsolete regulation of microtubule motor activity, plus-end-directed OBSOLETE. Any process that modulates the frequency, rate or extent of ATP-dependent microtubule motor activity, plus-end-directed. tmpzr1t_l9r_go_relaxed.owl regulation of plus-end-directed kinesin ATPase activity|regulation of kinesin activity|regulation of ATP-dependent microtubule motor activity, plus-end-directed|regulation of kinesin ATP phosphohydrolase (plus-end-directed)|regulation of plus-end-directed microtubule motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140659 bf 2011-04-05T08:39:43Z True biological_process owl:Class GO:0007247 biolink:NamedThing obsolete activation of MAPK (mating sensu Saccharomyces) OBSOLETE. Upregulation of MAP kinase activity in the context of transduction of mating pheromone signal, as described for Saccharomyces. tmpzr1t_l9r_go_relaxed.owl activation of MAPK (mating sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. GO:0000750 True biological_process owl:Class GO:0031378 biolink:NamedThing obsolete plastid type II fatty acid synthase complex OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity, located in a plastid. tmpzr1t_l9r_go_relaxed.owl plastid type II fatty acid synthase complex|plastid type II FAS complex Obsoleted because type II fatty acid synthase is not a complex. True cellular_component owl:Class GO:0048184 biolink:NamedThing obsolete follistatin binding OBSOLETE. Binding to the peptide hormone follistatin. tmpzr1t_l9r_go_relaxed.owl follistatin binding GO:0017046 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0003102 biolink:NamedThing obsolete positive regulation of diuresis by angiotensin OBSOLETE. Any process mediated by angiotensin that increases the rate of diuresis. tmpzr1t_l9r_go_relaxed.owl positive regulation of diuresis by angiotensin|angiotensin-mediated positive regulation of diuresis This term was made obsolete because the term is misleading. GO:0035810 True biological_process owl:Class GO:0052326 biolink:NamedThing obsolete interaction with symbiont via protein secreted by type IV secretion system OBSOLETE. An interaction with the symbiont organism mediated by a substance secreted by the other organism by a type IV secretion system. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with symbiont via protein secreted by type IV secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0021865 biolink:NamedThing obsolete symmetric radial glial cell division in forebrain OBSOLETE. The mitotic division of a radial glial cell giving rise to two new radial glial cells in the forebrain. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0052205 biolink:NamedThing obsolete modulation of molecular function in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the function of proteins in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of molecular function in other organism during symbiotic interaction|modification of protein function in other organism during symbiotic interaction|modification of molecular function in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0015596 biolink:NamedThing obsolete glycine betaine/proline porter activity OBSOLETE. Catalysis of the reaction: ATP + H2O + quaternary amine(out) = ADP + phosphate + quaternary amine(in). tmpzr1t_l9r_go_relaxed.owl glycine betaine/proline porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015187|GO:0015418|GO:0015193|GO:0015199 True molecular_function owl:Class GO:0009467 biolink:NamedThing obsolete monoheme class I cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl monoheme class I cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0042499 biolink:NamedThing obsolete signal peptide peptidase activity OBSOLETE. Catalysis of the intramembrane proteolysis of a signal peptide, following its removal from a preprotein. tmpzr1t_l9r_go_relaxed.owl signal peptide peptidase activity|SPP GO:0042500 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1900418 biolink:NamedThing obsolete positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of purine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl activation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|positive regulation of purine nucleotide formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of purine nucleotide biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of purine nucleotide biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of purine nucleotide formation by positive regulation of transcription from RNA polymerase II promoter|up regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of purine nucleotide synthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of purine nucleotide formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of purine nucleotide formation by positive regulation of transcription from RNA polymerase II promoter|up regulation of purine nucleotide biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of purine nucleotide synthesis by positive regulation of transcription from RNA polymerase II promoter|activation of purine nucleotide biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of purine nucleotide anabolism by positive regulation of transcription from RNA polymerase II promoter|upregulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|positive regulation of purine nucleotide anabolism by positive regulation of transcription from RNA polymerase II promoter|up-regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of purine nucleotide anabolism by positive regulation of transcription from RNA polymerase II promoter|up regulation of purine nucleotide anabolism by positive regulation of transcription from RNA polymerase II promoter|positive regulation of purine nucleotide biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of purine nucleotide synthesis by positive regulation of transcription from RNA polymerase II promoter|activation of purine nucleotide synthesis by positive regulation of transcription from RNA polymerase II promoter|activation of purine nucleotide formation by positive regulation of transcription from RNA polymerase II promoter|up-regulation of purine nucleotide anabolism by positive regulation of transcription from RNA polymerase II promoter|up regulation of purine nucleotide synthesis by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. krc 2012-04-20T10:13:58Z True biological_process owl:Class GO:0046410 biolink:NamedThing obsolete 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity OBSOLETE. Catalysis of the reaction: 2-oxoglutarate + isochorismate = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate + pyruvate + CO2. tmpzr1t_l9r_go_relaxed.owl 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity This term was made obsolete because it was derived from an EC entry (EC:2.5.1.64) that has since been split into two entries. GO:0070204|GO:0070205 True molecular_function owl:Class GO:0015034 biolink:NamedThing obsolete cytochrome P450 activity OBSOLETE. A cytochrome b-like protein that has a sulfur atom ligated to the iron of the prosthetic group (heme-thiolate); enzymes: typically monooxygenases acting on, typically, lipophilic substrates. The characteristic mode of action of these enzymes is not electron transfer (some P450 enzymes probably do not even involve the reversible Fe(II)/Fe(III) equilibrium), but rather oxygen atom transfer. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 activity This term was made obsolete because it is a grouping term representing a set of gene products. GO:0019825 True molecular_function owl:Class GO:0019131 biolink:NamedThing obsolete tripeptidyl-peptidase I activity OBSOLETE. Catalysis of the release of an N-terminal tripeptide from a polypeptide; requires acid pH. tmpzr1t_l9r_go_relaxed.owl tripeptidyl peptidase activity|tripeptidyl-peptidase I activity|tripeptidyl aminopeptidase activity GO:0008240 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0009488 biolink:NamedThing obsolete amicyanin OBSOLETE. A copper-containing protein that acts as an electron carrier between methylamine dehydrogenase and cytochrome c. tmpzr1t_l9r_go_relaxed.owl amicyanin GO:0009055 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:0050983 biolink:NamedThing obsolete deoxyhypusine biosynthetic process from spermidine OBSOLETE. The chemical reactions resulting in the formation of deoxyhypusine from spermidine by the enzyme [eIF-5A]-deoxyhypusine synthase. The reaction occurs in four steps: 1. spermidine + NAD+ = dehydrospermidine + NADH + H+; 2. dehydrospermidine + [enzyme]-lysine = 1,3-diaminopropane + [enzyme]-lysine-N6=CH(CH2)3NH2; 3. [enzyme]-lysine-N6=CH(CH2)3NH2 = [eIF-5A]-lysine-N6=CH(CH2)3NH2; 4. [eIF-5A]-lysine-N6=CH(CH2)3NH2 + NADH + H+ = [eIF-5A]-deoxyhypusine + NAD+. tmpzr1t_l9r_go_relaxed.owl [eIF-5A]-deoxyhypusine synthase activity|deoxyhypusine biosynthesis from spermidine, using deoxyhypusine synthase|deoxyhypusine biosynthetic process from spermidine, using deoxyhypusine synthase|deoxyhypusine anabolism from spermidine, using deoxyhypusine synthase|spermidine catabolic process to deoxyhypusine, using deoxyhypusine synthase|(4-aminobutyl)lysine synthase activity|spermidine breakdown to deoxyhypusine, using deoxyhypusine synthase|deoxyhypusine formation from spermidine, using deoxyhypusine synthase|spermidine degradation to deoxyhypusine, using deoxyhypusine synthase MetaCyc:2.5.1.46-RXN|EC:2.5.1.46 The reason for obsoletion is that although GO:0050983 is described as a multistep process, the entire reaction is carried out by a single enzyme, therefore we would define it as the molecular function GO:0034038 deoxyhypusine synthase activity. GO:0034038 True biological_process owl:Class GO:0005240 biolink:NamedThing obsolete glycine receptor-associated protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl glycine receptor-associated protein This term was made obsolete because it does not describe a molecular function. GO:0005515 True molecular_function owl:Class GO:0046243 biolink:NamedThing obsolete p-xylene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of p-xylene (1,4-dimethylbenzene), a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl para-xylene biosynthetic process|p-xylene biosynthesis|p-xylene anabolism|para-xylene biosynthesis|p-xylene biosynthetic process|p-xylene formation|p-xylene synthesis GO:0018951 This term was made obsolete because p-xylene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0075084 biolink:NamedThing obsolete modulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of transmembrane receptor-mediated cAMP signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont transmembrane receptor-mediated cAMP signaling The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0004238 biolink:NamedThing obsolete meprin A activity OBSOLETE. Catalysis of the hydrolysis of protein and peptide substrates preferentially on carboxyl side of hydrophobic residues. tmpzr1t_l9r_go_relaxed.owl PABA-peptide hydrolase activity|meprin-a|meprin A activity|PPH|meprin|N-benzoyl-L-tyrosyl-p-aminobenzoic acid hydrolase activity|endopeptidase-2 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0010860 biolink:NamedThing obsolete proteasome regulator activity OBSOLETE. Modulates the activity of the proteasome complex. The proteasome complex performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis. tmpzr1t_l9r_go_relaxed.owl proteasome regulator activity The term was made obsolete because 'proteasome' is not a valid molecular function term. GO:0061135|GO:0061136 True molecular_function owl:Class GO:0046245 biolink:NamedThing obsolete styrene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of styrene, an aromatic hydrocarbon liquid used in the manufacture of polystyrene. tmpzr1t_l9r_go_relaxed.owl styrene biosynthetic process|styrene biosynthesis|styrene anabolism|styrene formation|styrene synthesis GO:0018966 This term was made obsolete because styrene is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0036226 biolink:NamedThing obsolete mitotic cell cycle arrest in response to glucose starvation OBSOLETE. The process in which the mitotic cell cycle is halted during one of the normal phases (G1, S, G2, M) as a result of deprivation of glucose. tmpzr1t_l9r_go_relaxed.owl cell cycle arrest in response to glucose starvation This term was made obsolete because it is superfluous, as only the more specific 'mitotic G2 cell cycle arrest in response to glucose starvation' has been observed. bf 2012-05-09T02:43:22Z True biological_process owl:Class GO:0046143 biolink:NamedThing obsolete positive regulation of coenzyme and prosthetic group metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl positive regulation of coenzyme and prosthetic group metabolic process This term was made obsolete because it was replaced by more specific terms. GO:0051200 True biological_process owl:Class GO:0015372 biolink:NamedThing obsolete glutamate/aspartate:sodium symporter activity OBSOLETE. Catalysis of the reaction: (glutamate or aspartate)(out) + Na+(out) = (glutamate or aspartate)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl glutamate/aspartate:sodium symporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0005313|GO:0005283|GO:0015183 True molecular_function owl:Class GO:0034019 biolink:NamedThing obsolete capsanthin/capsorubin synthase activity OBSOLETE. Catalysis of the reactions: violaxanthin = capsorubin, and antheraxanthin = capsanthin. tmpzr1t_l9r_go_relaxed.owl ketoxanthophyll synthase activity|CCS|violaxanthin-capsorubin isomerase (ketone-forming) activity|capsanthin/capsorubin synthase activity|capsanthin-capsorubin synthase activity This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0052727|GO:0052728 True molecular_function owl:Class GO:0018300 biolink:NamedThing obsolete iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide OBSOLETE. The incorporation of iron into a 6Fe-6S cluster by hexakis-L-cysteinyl hexairon hexasulfide. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide|iron incorporation into iron-sulphur cluster via hexakis-L-cysteinyl hexairon hexasulphide This term was made obsolete because the prismane 6Fe-6S cluster is now thought not to exist. GO:0018283|GO:0018198 True biological_process owl:Class GO:0005188 biolink:NamedThing obsolete larval serum protein (sensu Insecta) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl larval serum protein (sensu Insecta)|arylphorin This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:2000327 biolink:NamedThing obsolete positive regulation of nuclear receptor transcription coactivator activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of ligand-dependent nuclear receptor transcription coactivator activity|positive regulation of ligand-dependent nuclear receptor transcription co-activator activity This term was obsoleted because it represents a molecular function. GO:0030374 vk 2011-01-18T06:30:23Z True biological_process owl:Class GO:0021909 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord anterior-posterior patterning OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0021512|GO:0006357 True biological_process owl:Class GO:0016467 biolink:NamedThing obsolete hydrogen-translocating F-type ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out). Found in eukaryotic mitochondria and chloroplasts and in bacteria. tmpzr1t_l9r_go_relaxed.owl proton-translocating F-type ATPase activity|ATP synthase|hydrogen-translocating F-type ATPase activity|F1-ATPase activity This term was made obsolete because it represents a gene product. GO:0046933|GO:0046961 True molecular_function owl:Class GO:0039551 biolink:NamedThing obsolete suppression by virus of host IRF3 activity by positive regulation of IRF3 catabolic process OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host IRF3 (interferon regulatory factor-3) by promoting the ubiquitin-dependent degradation of IRF3, mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl promotion by virus of proteosome-dependent IRF3 degradation The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-20T11:35:33Z True biological_process owl:Class GO:0051671 biolink:NamedThing obsolete induction of autolysin activity in other organism OBSOLETE. Any process in which an organism initiates the activity of the inactive enzyme autolysin in another organism. The autolysin enzyme belongs to, and is active in, the other organism. tmpzr1t_l9r_go_relaxed.owl induction of autolysin activity in another organism|positive regulation of autolysin activity in another organism|activation of autolytic activity in other organism|induction of autolytic activity in other organism|induction of autolysis in other organism|activation of autolysin activity in another organism|activation of autolysis in other organism https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0004290 biolink:NamedThing obsolete kexin activity OBSOLETE. Catalysis of the cleavage of the Arg-Xaa bond in Lys-Arg-Xaa and Arg-Arg-Xaa to process Yeast alpha-factor pheromone and killer toxin precursors. tmpzr1t_l9r_go_relaxed.owl Kex2-like endoproteinase|protease KEX2|Kex2 endoprotease|endoproteinase Kex2p|paired-basic endopeptidase activity|andrenorphin-Gly-generating enzyme|yeast cysteine proteinase F|kexin activity|Kex2 protease|prohormone-processing proteinase activity|Kex2 endopeptidase|Kex2-like precursor protein processing endoprotease|Kex2 proteinase|proteinase yscF activity|Kex2 endoproteinase|proteinase Kex2p|prohormone-processing endoprotease activity|yeast KEX2 protease activity|prohormone-processing KEX2 proteinase|gene KEX2 dibasic proteinase|Kex 2p proteinase GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0000193 biolink:NamedThing obsolete activation of MAPK (pseudohyphal growth) OBSOLETE. Upregulation of MAP kinase activity in the context of regulating pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl activation of MAPK (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0033171 biolink:NamedThing obsolete nucleoprotein filament-forming ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the assembly of proteins such as Rad51p onto single-stranded (ss) DNA to form a helical nucleoprotein filament. tmpzr1t_l9r_go_relaxed.owl nucleoprotein filament-forming ATPase activity This term was made obsolete because nucleoprotein filament formation does not require ATP hydrolysis, so the term is misleading. True molecular_function owl:Class GO:1900009 biolink:NamedThing obsolete positive regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging OBSOLETE. Any process that activates or increases the frequency, rate or extent of extrachromosomal rDNA circle accumulation involved in replicative cell aging. tmpzr1t_l9r_go_relaxed.owl up regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing|positive regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing|up regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging|up regulation of extrachromosomal rDNA circle accumulation during replicative cell aging|positive regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging|positive regulation of extrachromosomal rDNA circle accumulation during replicative cell aging|up regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. se 2012-01-09T10:44:18Z True biological_process owl:Class GO:1905566 biolink:NamedThing obsolete negative regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of receptor-mediated endocytosis of LDL|down-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|negative regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|down-regulation of receptor-mediated endocytosis of LDL|downregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|inhibition of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|down regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|downregulation of receptor-mediated endocytosis of LDL|inhibition of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|down regulation of receptor-mediated endocytosis of LDL|down-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|down regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|downregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|inhibition of receptor-mediated endocytosis of LDL This term was obsoleted at the TermGenie Gatekeeper stage. nc 2016-10-18T10:58:46Z True biological_process owl:Class GO:0052114 biolink:NamedThing obsolete adaptation to host pH environment OBSOLETE. The responsive adjustment of an organism to the pH conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adaptation to host pH environment|pH tolerance to host environment This term was made obsolete because adaptation was not deemed to be a valid biological process. True biological_process owl:Class GO:0001721 biolink:NamedThing obsolete intermediate filament associated protein OBSOLETE. Proteins that associate with intermediate filaments and function in the supramolecular organization of cellular intermediate filament networks. tmpzr1t_l9r_go_relaxed.owl intermediate filament associated protein|IFAP GO:0005882 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class causally_upstream_of biolink:NamedThing causally upstream of tmpzr1t_l9r_go_relaxed.owl RO:0002411 external causally_upstream_of GO:0106183 biolink:NamedThing obsolete translocase activity acting on carbohydrates and their derivatives. OBSOLETE. Catalysis of the translocation of carbohydrates and their derivatives. tmpzr1t_l9r_go_relaxed.owl EC:7.5.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:54:25Z True molecular_function owl:Class GO:0018320 biolink:NamedThing obsolete enzyme active site formation via S-methyl-L-cysteine OBSOLETE. The transient methylation of peptidyl-cysteine to form S-methyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0234 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:21527678. GO:0008757 True biological_process owl:Class GO:0004214 biolink:NamedThing obsolete dipeptidyl-peptidase I activity OBSOLETE. Catalysis of the release of an N-terminal dipeptide, Xaa-Xbb from Xaa-Xbb-Xcc, except when Xaa is Arg or Lys, or Xbb or Xcc is Pro. tmpzr1t_l9r_go_relaxed.owl dipeptidyl-peptidase I activity|cathepsin C activity|DAP I|dipeptidyl transferase activity|dipeptide arylamidase I|dipeptidyl aminopeptidase I activity|cathepsin J activity EC:3.4.14.1|MetaCyc:3.4.14.1-RXN This term was made obsolete because it represents a gene product. GO:0008234|GO:0008239 True molecular_function owl:Class GO:0060864 biolink:NamedThing obsolete positive regulation of floral organ abscission by small GTPase mediated signal transduction OBSOLETE. Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that increases the rate or extent of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. dph 2009-08-12T04:34:56Z True biological_process owl:Class GO:0070028 biolink:NamedThing obsolete regulation of transcription by carbon monoxide OBSOLETE. Any process involving carbon monoxide that modulates the frequency, rate or extent of transcription. tmpzr1t_l9r_go_relaxed.owl regulation of transcription by CO This term was obsoleted because it represents a GO-CAM model. GO:0006357 True biological_process owl:Class GO:0000763 biolink:NamedThing obsolete cell morphogenesis involved in unidirectional conjugation OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo unidirectional conjugation. tmpzr1t_l9r_go_relaxed.owl cell morphogenesis involved in unidirectional conjugation This term was made obsolete because unidirectional conjugation occurs only in prokaryotes, which do not undergo morphogenetic changes associated with conjugation. In short, the process described by this term does not occur. True biological_process owl:Class GO:0039603 biolink:NamedThing obsolete TBP-class protein binding involved in viral suppression of host transcription initiation from RNA polymerase II promoter OBSOLETE. Selective and non-covalent interaction of a viral protein with a member of the class of TATA-binding proteins (TBP) in the host, including any of the TBP-related factors (TRFs), which contributes to the viral-suppression of assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14640 The reason for obsoletion is that the term is too specific, and the paper referenced in the term should instead be annotated to GO:0039602 ; suppression by virus of host transcription initiation from RNA polymerase II promoter. bf 2012-07-05T04:00:15Z True molecular_function owl:Class GO:0071511 biolink:NamedThing obsolete inactivation of MAPK activity involved in conjugation with cellular fusion OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl conjugation with cellular fusion, inactivation of MAPK activity|termination of MAPK activity during conjugation with cellular fusion|inactivation of MAPK activity involved in mating response|conjugation with cellular fusion, termination of MAPK activity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. mah 2010-01-05T02:10:47Z True biological_process owl:Class GO:0052424 biolink:NamedThing obsolete modification by organism of symbiont morphology or physiology via protein secreted by type III secretion system OBSOLETE. The process by which an organism effects a change in the structure or function of its symbiont organism, mediated by a substance secreted by a type III secretion system in the organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of symbiont morphology or physiology via protein secreted by type III secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0010978 biolink:NamedThing obsolete gene silencing involved in chronological cell aging OBSOLETE. Any transcriptional or post-transcriptional process, arising in non-dividing cells as they age, carried out at the cellular level that results in long-term gene inactivation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0090398|GO:0044838 tb 2009-06-01T11:39:42Z True biological_process owl:Class GO:0070019 biolink:NamedThing obsolete transforming growth factor beta type II receptor homodimeric complex OBSOLETE. A receptor complex that consists of two transforming growth factor beta (TGF-beta) type II receptor monomers. TGF-beta type II receptor dimers form in the presence or absence of ligand, and upon ligand binding can associate with TGF-beta type I receptor dimers. tmpzr1t_l9r_go_relaxed.owl TGF-beta type II receptor dimer|transforming growth factor beta type II receptor complex|TGFBR2 homodimer|TGF-beta type II receptor complex https://github.com/geneontology/go-ontology/issues/12676 This term was made obsolete because it does not represent a physiological complex. True cellular_component owl:Class GO:0060277 biolink:NamedThing obsolete negative regulation of transcription involved in G1 phase of mitotic cell cycle OBSOLETE. Any process that stop, prevents or decreases transcription as part of the G1 phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter during G1 phase of mitotic cell cycle|negative regulation of transcription involved in G1 phase of mitotic cell cycle This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'. GO:0000122|GO:0071930 True biological_process owl:Class GO:0071552 biolink:NamedThing obsolete RIP homotypic interaction motif-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a RIP homotypic interaction motif (RHIM) interaction. tmpzr1t_l9r_go_relaxed.owl RHIM-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-13T03:08:30Z True biological_process owl:Class GO:0015337 biolink:NamedThing obsolete low affinity metal ion uptake transporter activity OBSOLETE. Catalysis of the reaction: Me2+(out) + H+(out) = Me2+(in) + H+(in). Me can be Mn2+ or Cu2+. tmpzr1t_l9r_go_relaxed.owl low affinity metal ion uptake transporter activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0046873|GO:0015295 True molecular_function owl:Class GO:0039549 biolink:NamedThing obsolete suppression by virus of host IRF3 activity by inhibition of IRF3 phosphorylation OBSOLETE. Any process in which a virus stops, prevents, or reduces the rate or extent of the phosphorylation of IRF3 (interferon regulatory factor-3), thereby inhibiting IRF3 activation. In response to signaling from RIG-1/MDA-5 receptors, IRF3 is phosphorylated on multiple serine and threonine residues; phosphorylation results in the cytoplasm-to-nucleus translocation of IRF3, DNA binding, and increased transcriptional activation of interferon-encoding genes. tmpzr1t_l9r_go_relaxed.owl inhibition of virus-induced IRF-3 phosphorylation|inhibition of phosphorylation-induced activation of host IRF3 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-19T04:27:06Z True biological_process owl:Class GO:0016804 biolink:NamedThing obsolete prolyl aminopeptidase activity OBSOLETE. Catalysis of the release of a N-terminal proline from a peptide. tmpzr1t_l9r_go_relaxed.owl proline aminopeptidase|cytosol aminopeptidase V|prolyl aminopeptidase activity|proline iminopeptidase activity|Pro-X aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined. True molecular_function owl:Class GO:0045564 biolink:NamedThing obsolete positive regulation of TRAIL receptor biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the TRAIL (TNF-related apoptosis inducing ligand) receptor. tmpzr1t_l9r_go_relaxed.owl positive regulation of TRAIL receptor anabolism|upregulation of TRAIL receptor biosynthetic process|positive regulation of TRAIL receptor formation|positive regulation of TRAIL receptor synthesis|up-regulation of TRAIL receptor biosynthetic process|positive regulation of TRAIL receptor biosynthesis|activation of TRAIL receptor biosynthetic process|up regulation of TRAIL receptor biosynthetic process|stimulation of TRAIL receptor biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0100020 biolink:NamedThing obsolete regulation of transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates transport. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0001722 biolink:NamedThing obsolete type I intermediate filament associated protein OBSOLETE. Low molecular weight (10-45 kDa) proteins that associate with intermediate filaments by lateral binding of the filaments and have the effect of creating tight macrofilament aggregates. tmpzr1t_l9r_go_relaxed.owl type I intermediate filament associated protein GO:0005882 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0039543 biolink:NamedThing obsolete suppression by virus of host RIG-I activity by viral RNA 5' processing OBSOLETE. The post-transcriptional removal by a virus of the 5' triphosphate group of their viral RNA, thereby preventing host RIG-I from recognizing viral RNA in the host cell. The intracellular pattern recognition receptor RIG-I (also known as DDX58) recognizes viral RNAs containing 5' triphosphates; removal by the virus of the 5'-terminal triphosphate group from their genome protects the viral RNA from RIG-recognition. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host RIG-I activity by inhibition of RNA binding The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-18T02:30:29Z True biological_process owl:Class GO:0005567 biolink:NamedThing obsolete cytosolic ribosomal RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytosolic ribosomal RNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0052415 biolink:NamedThing obsolete metabolism by organism of glucan in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving glucans within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of glucan in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0031660 biolink:NamedThing obsolete regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M transition of mitotic cell cycle OBSOLETE. Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G2/M transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl G2/M-specific regulation of cyclin-dependent protein kinase activity|regulation of cyclin-dependent protein kinase activity involved in G2/M|regulation of cyclin-dependent protein kinase activity during G2/M This term was obsoleted because it is a MF represented as a BP. GO:0010389 True biological_process owl:Class GO:1902625 biolink:NamedThing obsolete negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. mah 2014-01-16T13:52:24Z True biological_process owl:Class GO:1904111 biolink:NamedThing obsolete negative regulation of plus-end directed microfilament motor activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of plus-end directed microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl down-regulation of plus-end directed actin-filament motor activity|downregulation of plus-end directed microfilament motor activity|down regulation of plus-end directed actin-filament motor activity|downregulation of barbed-end directed actin-filament motor activity|down-regulation of barbed-end directed actin-filament motor activity|down regulation of plus-end directed actin filament motor activity|negative regulation of barbed-end directed actin-filament motor activity|down-regulation of plus-end directed microfilament motor activity|down regulation of plus-end directed microfilament motor activity|down regulation of barbed-end directed actin-filament motor activity|inhibition of plus-end directed microfilament motor activity|inhibition of barbed-end directed actin-filament motor activity|inhibition of plus-end directed actin-filament motor activity|negative regulation of plus-end directed actin-filament motor activity|inhibition of plus-end directed actin filament motor activity|down-regulation of plus-end directed actin filament motor activity|downregulation of plus-end directed actin-filament motor activity|downregulation of plus-end directed actin filament motor activity|negative regulation of plus-end directed actin filament motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140661 kmv 2015-04-03T18:28:30Z True biological_process owl:Class GO:0015076 biolink:NamedThing obsolete heavy metal ion transporter activity OBSOLETE. Enables the directed movement of heavy metal ions into, out of or within a cell, or between cells. Heavy metals are those that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. tmpzr1t_l9r_go_relaxed.owl heavy metal ion transporter activity This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0046873 True molecular_function owl:Class GO:1903150 biolink:NamedThing obsolete calcium ion transmembrane transporter activity involved in calcium ion import into cell OBSOLETE. Any calcium ion transmembrane transporter activity that is involved in calcium ion import into cell. tmpzr1t_l9r_go_relaxed.owl calcium ion transmembrane transporter activity involved in calcium ion uptake into cell|calcium ion transmembrane transporter activity involved in calcium ion import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:36Z True molecular_function owl:Class GO:0052332 biolink:NamedThing obsolete modification by organism of membrane in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a cellular membrane of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of cell membrane in other organism involved in symbiotic interaction|modification by organism of cell membrane in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0008651 biolink:NamedThing obsolete actin polymerizing activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin polymerizing activity This term was made obsolete because it represents a biological process. GO:0030041|GO:0042802 True molecular_function owl:Class GO:0008162 biolink:NamedThing obsolete cyclodiene resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cyclodiene resistance GO:0046682 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0023069 biolink:NamedThing obsolete signal transmission via xylem OBSOLETE. The process in which a signal is conveyed via the xylem. tmpzr1t_l9r_go_relaxed.owl signal transmission via xylem This term was made obsolete because the meaning of the term is ambiguous. GO:0023052|GO:0010232 2010-02-16T09:30:50Z True biological_process owl:Class GO:0045714 biolink:NamedThing obsolete regulation of low-density lipoprotein particle receptor biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of low-density lipoprotein particle receptors. tmpzr1t_l9r_go_relaxed.owl regulation of LDLr biosynthesis|regulation of low-density lipoprotein receptor biosynthetic process|regulation of LDLr biosynthetic process|regulation of low-density lipoprotein receptor formation|regulation of low-density lipoprotein receptor synthesis|regulation of low-density lipoprotein receptor anabolism|regulation of low-density lipoprotein receptor biosynthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0042057 biolink:NamedThing obsolete transforming growth factor beta receptor anchoring activity OBSOLETE. Binds to transforming growth factor beta receptor and anchors it to a particular subcellular location. tmpzr1t_l9r_go_relaxed.owl TGFbeta receptor anchoring activity|TGF-beta receptor anchoring activity|transforming growth factor beta receptor anchor activity|transforming growth factor beta receptor anchoring activity This term was made obsolete because it represents a combination of process and function information. GO:0008104|GO:0005160 True molecular_function owl:Class GO:0052046 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via secreted substance OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by one of the organisms. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of host morphology or physiology via ellicitor|modification of host morphology or physiology via effector molecule This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0052368 biolink:NamedThing obsolete disruption by organism of cellular component in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of cellular components of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl degradation of cellular component in other organism|catabolism of structural constituent in other organism|disassembly by organism of cellular component in other organism involved in symbiotic interaction|disassembly by organism of cellular component in other organism during symbiotic interaction|catabolism of cellular component in other organism This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0035948 biolink:NamedThing obsolete positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of gluconeogenesis by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of glucose biosynthesis by upregulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by positive regulation of transcription from Pol II promoter|regulation of glucose biosynthetic process by upregulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthesis by positive regulation of transcription from Pol II promoter|regulation of gluconeogenesis by activation of transcription from RNA polymerase II promoter|regulation of glucose biosynthetic process by positive regulation of transcription from Pol II promoter|regulation of glucose biosynthesis by up regulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by upregulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthesis by positive regulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthetic process by up regulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by up-regulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthesis by up-regulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by up regulation of transcription from RNA polymerase II promoter|regulation of glucose biosynthetic process by up-regulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by stimulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0052137 biolink:NamedThing obsolete aerotaxis in host OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl aerotaxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0004277 biolink:NamedThing obsolete granzyme A activity OBSOLETE. Catalysis of the hydrolysis of proteins, including fibronectin, type IV collagen and nucleolin. Preferential cleavage: Arg-Xaa > Lys-Xaa > Phe-Xaa in small molecule substrates. tmpzr1t_l9r_go_relaxed.owl TSP-1|CTLA3|cytotoxic T-lymphocyte proteinase 1 activity|HuTPS|T-cell associated protease 1|cytotoxic T lymphocyte serine protease|T-cell derived serine proteinase|granzyme A activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1903240 biolink:NamedThing obsolete negative regulation of positive regulation of the force of heart contraction by chemical signal OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of positive regulation of the force of heart contraction by chemical signal. tmpzr1t_l9r_go_relaxed.owl downregulation of positive regulation of the force of heart muscle contraction by chemical signal|inhibition of positive regulation of the force of heart muscle contraction by chemical signal|down regulation of positive regulation of the force of heart muscle contraction by chemical signal|negative regulation of positive regulation of the force of heart muscle contraction by chemical signal|downregulation of positive regulation of the force of heart contraction by chemical signal|down-regulation of positive regulation of the force of heart contraction by chemical signal|down-regulation of positive regulation of the force of heart muscle contraction by chemical signal|negative regulation of positive regulation of the force of heart contraction by chemical signal|inhibition of positive regulation of the force of heart contraction by chemical signal|down regulation of positive regulation of the force of heart contraction by chemical signal This term was obsoleted at the TermGenie Gatekeeper stage. rl 2014-07-31T17:00:23Z True biological_process owl:Class GO:0003784 biolink:NamedThing obsolete barbed-end actin capping/severing activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl barbed-end actin capping/severing activity This term was made obsolete because it describes two biological processes. GO:0051014|GO:0051016 True molecular_function owl:Class GO:0052583 biolink:NamedThing obsolete oxidoreductase activity, acting on halogen in donors OBSOLETE. Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20613 EC:1.22.-.- This term was obsoleted because EC obsoleted it, and there was no other evidence that this function exists. 2010-08-13T10:14:12Z True molecular_function owl:Class GO:0085005 biolink:NamedThing obsolete interaction with host via secreted substance released from invasive hyphae OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via invasive hyphae. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T02:59:51Z True biological_process owl:Class GO:0008822 biolink:NamedThing obsolete crotonobetaine/carnitine-CoA ligase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl crotonobetaine/carnitine-CoA ligase activity This term was made obsolete because it represents a bifunctional gene product. GO:0051108|GO:0051109 True molecular_function owl:Class GO:0009580 biolink:NamedThing obsolete thylakoid (sensu Bacteria) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl thylakoid (sensu Bacteria) This term was made obsolete because more specific children exist. GO:0042716|GO:0030075 True cellular_component owl:Class GO:0004050 biolink:NamedThing obsolete apyrase activity OBSOLETE. Catalysis of the reaction: ATP + 2 H2O = AMP + 2 phosphate. tmpzr1t_l9r_go_relaxed.owl apyrase activity This term was made obsolete because it represents a gene product which can catalyze two reactions. GO:0017111|GO:0017110 True molecular_function owl:Class GO:1904079 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process OBSOLETE. Any negative regulation of transcription from RNA polymerase II promoter that is involved in negative regulation of neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl inhibition of global transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|down regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|down-regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|down regulation of transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|negative regulation of global transcription from Pol II promoter involved in negative regulation of neuron apoptotic process|downregulation of transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|inhibition of transcription from RNA polymerase II promoter involved in neuron survival|down-regulation of global transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of global transcription from Pol II promoter involved in neuron survival|down regulation of global transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|down-regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|down-regulation of global transcription from RNA polymerase II promoter involved in neuron survival|down-regulation of transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|down regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|down-regulation of transcription from RNA polymerase II promoter involved in neuron survival|down regulation of transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|down regulation of transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|inhibition of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in negative regulation of neuron apoptosis|down regulation of transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in negative regulation of neuron apoptotic process|down-regulation of global transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter, global involved in negative regulation of programmed cell death, neurons|downregulation of transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|down-regulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|down regulation of global transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|downregulation of transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|inhibition of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of global transcription from Pol II promoter involved in downregulation of neuron apoptosis|down-regulation of transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of transcription from RNA polymerase II promoter, global involved in inhibition of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter, global involved in downregulation of neuron apoptosis|down-regulation of global transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter, global involved in down regulation of neuron apoptosis|inhibition of global transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|downregulation of transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|downregulation of transcription from RNA polymerase II promoter involved in neuron survival|down-regulation of transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|negative regulation of global transcription from Pol II promoter involved in down regulation of neuron apoptosis|inhibition of transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of global transcription from Pol II promoter involved in negative regulation of neuron apoptosis|inhibition of global transcription from RNA polymerase II promoter involved in neuron survival|negative regulation of transcription from Pol II promoter involved in down-regulation of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|negative regulation of transcription from Pol II promoter involved in inhibition of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in downregulation of neuron apoptosis|inhibition of transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in neuron survival|negative regulation of transcription from RNA polymerase II promoter involved in neuron survival|negative regulation of transcription from RNA polymerase II promoter, global involved in down-regulation of neuron apoptosis|downregulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in neuron survival|down regulation of transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|down-regulation of global transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of transcription from RNA polymerase II promoter, global involved in neuron survival|negative regulation of global transcription from Pol II promoter involved in down-regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter, global involved in negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter, global involved in negative regulation of neuron apoptotic process|inhibition of transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|inhibition of global transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|negative regulation of global transcription from Pol II promoter involved in inhibition of neuron apoptosis|downregulation of transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|down-regulation of global transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|downregulation of global transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|inhibition of transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|inhibition of global transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in neuron survival|downregulation of global transcription from RNA polymerase II promoter involved in neuron survival|inhibition of transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|down-regulation of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|down-regulation of transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|down regulation of global transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons|negative regulation of transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|down regulation of transcription from RNA polymerase II promoter involved in neuron survival|inhibition of global transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|downregulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|negative regulation of transcription from RNA polymerase II promoter involved in downregulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in inhibition of neuron apoptosis|negative regulation of transcription from Pol II promoter involved in down regulation of neuron apoptosis|down-regulation of transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter involved in down regulation of neuron apoptosis|downregulation of global transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|negative regulation of global transcription from Pol II promoter involved in negative regulation of programmed cell death, neurons|inhibition of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptotic process|negative regulation of transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of gene-specific transcription from RNA polymerase II promoter involved in negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter involved in down-regulation of neuron apoptosis|inhibition of global transcription from RNA polymerase II promoter involved in negative regulation of programmed cell death, neurons This term was obsoleted at the TermGenie Gatekeeper stage. GO:0000122|GO:0043524 kmv 2015-03-24T17:28:41Z True biological_process owl:Class GO:0051405 biolink:NamedThing obsolete microbial collagenase activity OBSOLETE. Catalysis of the digestion of native collagen in the triple helical region at Xaa-Gly bonds. tmpzr1t_l9r_go_relaxed.owl matirx metalloproteinase-18|matrix metalloproteinase-1|Clostridium histolyticum proteinase A|Clostridium histolyticum collagenase activity|collagen peptidase activity|azocollase activity|collagen protease activity|collagenase MMP-1|metalloproteinase-1|kollaza|matrix metalloproteinase-8|soycollagestin|clostridiopeptidase II|collagenase I activity|nucleolysin|Achromobacter iophagus collagenase|collagenase 1 activity|clostridiopeptidase I|microbial collagenase activity|aspergillopeptidase C|metallocollagenase activity|collagenase A activity|clostridiopeptidase A activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0043947 biolink:NamedThing obsolete positive regulation by host of symbiont catalytic activity OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by host of symbiont enzyme activity|upregulation by host of symbiont enzyme activity|activation of symbiont enzyme activity|up regulation by host of symbiont enzyme activity|positive regulation by host of symbiont enzyme activity|activation by host of symbiont enzyme activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1901572 biolink:NamedThing obsolete chemical substance metabolic process OBSOLETE. The chemical reactions and pathways involving chemical substance. tmpzr1t_l9r_go_relaxed.owl chemical substance metabolic process|chemical substance metabolism This term was obsoleted at the TermGenie Gatekeeper stage. pr 2012-11-04T18:10:32Z True biological_process owl:Class GO:1904771 biolink:NamedThing obsolete cellular response to doxorubicin OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a doxorubicin stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-10-28T20:48:30Z True biological_process owl:Class GO:0018308 biolink:NamedThing obsolete enzyme active site formation via N6-pyruvic acid 2-iminyl-L-lysine OBSOLETE. The transient modification of lysine by pyruvate to form N6-pyruvic acid 2-iminyl-L-lysine, found in the active site of dihydrodipicolinate synthase. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via N6-pyruvic acid 2-iminyl-L-lysine This term was made obsolete because this process does not occur: the modification occurs before it can be an active site. True biological_process owl:Class GO:0008633 biolink:NamedThing obsolete activation of pro-apoptotic gene products OBSOLETE. The conversion of proteins that induce or sustain apoptosis to an active form. tmpzr1t_l9r_go_relaxed.owl activation of pro-apoptotic gene products|induction of pro-apoptotic gene products This term was made obsolete because more specific terms were created. Additionally, the meaning of the term is ambiguous (some gene products may be involved in apoptosis, or not, depending on cell type, tissue, condition). True biological_process owl:Class GO:0085011 biolink:NamedThing obsolete interaction with host via protein secreted by Sec complex OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Sec complex. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host via protein secreted by Sec secretion system This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:18:36Z True biological_process owl:Class GO:0035424 biolink:NamedThing obsolete MAPK import into nucleus involved in innate immune response OBSOLETE. The directed movement of a MAP kinase to the nucleus in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK involved in innate immune response The reason for obsoletion is that this term represents a GO-CAM model. GO:0006606 bf 2010-03-29T01:29:36Z True biological_process owl:Class GO:0052249 biolink:NamedThing obsolete modulation of RNA levels in other organism involved in symbiotic interaction OBSOLETE. The alteration by an organism of the levels of RNA in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of RNA levels in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0052334 biolink:NamedThing obsolete modification by organism of cytoskeleton of other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of the cytoskeleton of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of cytoskeleton of other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0008350 biolink:NamedThing obsolete kinetochore motor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl kinetochore motor activity This term was made obsolete because it includes cellular component information. GO:0000776|GO:0003777 True molecular_function owl:Class GO:0072368 biolink:NamedThing obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:18:13Z True biological_process owl:Class GO:1900525 biolink:NamedThing obsolete positive regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of phosphatidylserine biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter|activation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter|up regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|activation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter|up-regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter|activation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up-regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up-regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter|up regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter|up regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|activation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-03T05:13:55Z True biological_process owl:Class GO:0030484 biolink:NamedThing obsolete muscle fiber OBSOLETE. The contractile fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. tmpzr1t_l9r_go_relaxed.owl muscle fiber|muscle fibre This term was made obsolete because a muscle fiber is a cell type rather than a cell component. To update annotations, consider the external ontology term 'muscle cell ; CL:0000187'. GO:0043292 True cellular_component owl:Class GO:1903246 biolink:NamedThing obsolete negative regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of adrenergic receptor signaling pathway involved in positive regulation of heart rate. tmpzr1t_l9r_go_relaxed.owl downregulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|inhibition of If activation by beta-adrenergic receptor signaling pathway|negative regulation of If activation by beta-adrenergic receptor signaling pathway|negative regulation of activation of funny current by beta-adrenergic receptor signaling pathway|down-regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|negative regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|downregulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|inhibition of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|negative regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|downregulation of If activation by beta-adrenergic receptor signaling pathway|negative regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|down regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|down regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|downregulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|down regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|down-regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|down regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|down-regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|downregulation of activation of funny current by beta-adrenergic receptor signaling pathway|downregulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate|down-regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|down regulation of activation of funny current by beta-adrenergic receptor signaling pathway|negative regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|down-regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|inhibition of adrenergic receptor signalling pathway involved in positive regulation of heart rate|inhibition of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate|down regulation of If activation by beta-adrenergic receptor signaling pathway|inhibition of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|downregulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|down-regulation of If activation by beta-adrenergic receptor signaling pathway|inhibition of activation of funny current by beta-adrenergic receptor signaling pathway|inhibition of adrenergic receptor signaling pathway involved in positive regulation of heart rate|down-regulation of activation of funny current by beta-adrenergic receptor signaling pathway|down regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. rl 2014-08-04T11:54:00Z True biological_process owl:Class GO:0042993 biolink:NamedThing obsolete positive regulation of transcription factor import into nucleus OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription factor transport from cytoplasm to nucleus|up regulation of transcription factor import into nucleus|positive regulation of transcription factor import into cell nucleus|upregulation of transcription factor import into nucleus|stimulation of transcription factor import into nucleus|positive regulation of transcription factor-nucleus import|up-regulation of transcription factor import into nucleus|activation of transcription factor import into nucleus The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus. GO:0042307 True biological_process owl:Class GO:0001304 biolink:NamedThing obsolete progressive alteration of chromatin involved in replicative cell aging OBSOLETE. A process that results in changes in chromatin structure contributing to replicative cell aging. tmpzr1t_l9r_go_relaxed.owl progressive alteration of chromatin during replicative cell ageing|progressive alteration of chromatin during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0006341 biolink:NamedThing obsolete chromatin insulator sequence binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chromatin insulator sequence binding GO:0043035 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0003803 biolink:NamedThing obsolete coagulation factor IXa activity OBSOLETE. Catalysis of the selective cleavage of the Arg-Ile bond in factor X to form factor Xa. tmpzr1t_l9r_go_relaxed.owl blood coagulation factor IX activity|blood-coagulation factor IXa|activated christmas factor|blood platelet cofactor II|autoprothrombin II|activated blood coagulation factor XI|Christmas factor activity|coagulation factor IXa activity|activated blood-coagulation factor IX GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1905545 biolink:NamedThing obsolete negative regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron. tmpzr1t_l9r_go_relaxed.owl negative regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|down regulation of regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|inhibition of regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|down regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|inhibition of regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|down-regulation of regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|downregulation of regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron|negative regulation of regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron This term was obsoleted at the TermGenie Gatekeeper stage. al 2016-10-11T16:15:05Z True biological_process owl:Class GO:0001524 biolink:NamedThing obsolete globin OBSOLETE. The colorless and basic protein moiety of hemoglobin and myoglobins. tmpzr1t_l9r_go_relaxed.owl globin GO:0005344 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052017 biolink:NamedThing obsolete catabolism by symbiont of host xylan OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host xylan https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0044033 biolink:NamedThing obsolete multi-organism metabolic process OBSOLETE. A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves more than one organism. tmpzr1t_l9r_go_relaxed.owl multi-organism metabolism|multi-organismal metabolic process|multi-organismal metabolism https://github.com/geneontology/go-ontology/issues/19769 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0052331 biolink:NamedThing obsolete hemolysis in other organism involved in symbiotic interaction OBSOLETE. The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another, where two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl hemolysin activity|haemolysis in other organism involved in symbiotic interaction|hemolysis of cells in other organism involved in symbiotic interaction|hemolysis by organism of RBCs in other organism during symbiotic interaction|hemolysis by organism of erythrocytes in other organism during symbiotic interaction|hemolysis by organism of red blood cells in other organism during symbiotic interaction|hemolysis of cells in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0042064 biolink:NamedThing obsolete cell adhesion receptor regulator activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cell adhesion receptor regulator activity This term was made obsolete because it represents a gene product. GO:0030155|GO:0005102 True molecular_function owl:Class GO:0048196 biolink:NamedThing obsolete plant extracellular matrix OBSOLETE. The matrix external to the plant plasma membrane, composed of the cell wall and middle lamella. tmpzr1t_l9r_go_relaxed.owl plant extracellular matrix|middle lamella-containing extracellular matrix Note that this term does not have 'extracellular region ; GO:0005576' as a parent because in plants the extracellular matrix is considered part of the cell. True cellular_component owl:Class GO:0071431 biolink:NamedThing obsolete tRNA-containing ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex that contains transfer RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl tRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm|tRNA-containing ribonucleoprotein complex export from cell nucleus|tRNA-containing ribonucleoprotein complex nucleus export|tRNA-containing RNP export from nucleus https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. GO:0051168 mah 2009-12-16T10:27:03Z True biological_process owl:Class GO:0004254 biolink:NamedThing obsolete acylaminoacyl-peptidase activity OBSOLETE. Catalysis of the reaction: acylaminoacyl-peptide + H2O = acylamino acid + peptide. tmpzr1t_l9r_go_relaxed.owl N-acylpeptide hydrolase activity|acylamino-acid-releasing enzyme activity|acylaminoacyl-peptidase activity|alpha-N-acylpeptide hydrolase activity|N-formylmethionine (fMet) aminopeptidase activity GO:0004252 True molecular_function owl:Class GO:0003808 biolink:NamedThing obsolete protein C (activated) activity OBSOLETE. Catalysis of the degradation of blood coagulation factors Va and VIIIa. tmpzr1t_l9r_go_relaxed.owl GSAPC|protein C (activated) activity|activated protein C|activated blood coagulation factor XIV activity|blood-coagulation factor XIVa|autoprothrombin II-A|protein Ca|autoprothrombin IIA activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052500 biolink:NamedThing obsolete positive regulation by organism of symbiont apoptosis OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by apoptosis. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont apoptosis|positive regulation by organism of symbiont apoptotic programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0008548 biolink:NamedThing obsolete signal-recognition-particle GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. Activity is associated with the signal-recognition particle, a protein and RNA-containing structure involved in endoplasmic reticulum-associated protein synthesis. tmpzr1t_l9r_go_relaxed.owl signal-recognition-particle GTPase activity This term was made obsolete because it represents a gene product. GO:0005786|GO:0003924 True molecular_function owl:Class GO:0060991 biolink:NamedThing obsolete lipid tube assembly involved in cytokinesis OBSOLETE. The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in cytokinesis. tmpzr1t_l9r_go_relaxed.owl lipid tubulation involved in cytokinesis|lipid tube assembly involved in cytokinesis This term was made obsolete because there is no evidence the process exists. dph 2010-01-11T02:22:25Z True biological_process owl:Class GO:0030530 biolink:NamedThing obsolete heterogeneous nuclear ribonucleoprotein complex OBSOLETE. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II, that which is translated into protein) with protein, which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA. tmpzr1t_l9r_go_relaxed.owl heterogeneous nuclear ribonucleoprotein complex|heterogeneous nuclear ribonucleoprotein|hnRNP Wikipedia:Heterogeneous_ribonucleoprotein_particle This term was made because heterogeneous nuclear ribonucleoprotein is an experimental construct and does not correspond cleanly to a functional cellular entity. GO:1990904|GO:0005681 True cellular_component owl:Class GO:0052407 biolink:NamedThing obsolete metabolism by organism of carbohydrate in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of carbohydrate in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0051195 biolink:NamedThing obsolete negative regulation of cofactor metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a cofactor. tmpzr1t_l9r_go_relaxed.owl downregulation of cofactor metabolic process|down-regulation of cofactor metabolic process|down regulation of cofactor metabolic process|inhibition of cofactor metabolic process|negative regulation of cofactor metabolism 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0042141 biolink:NamedThing obsolete mating pheromone exporter OBSOLETE. Exports diffusible peptide signals that are responsible for binding to other cells and triggering a series of responses to facilitate mating. tmpzr1t_l9r_go_relaxed.owl mating pheromone exporter This term was made obsolete because it is too gene product specific. GO:0042626|GO:0043190 True molecular_function owl:Class GO:0045474 biolink:NamedThing obsolete response to ether (sensu Insecta) OBSOLETE. A change in state or activity of an insect (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ether stimulus. tmpzr1t_l9r_go_relaxed.owl response to ether (sensu Insecta) This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. GO:0048150 True biological_process owl:Class GO:0000115 biolink:NamedThing obsolete regulation of transcription involved in S phase of mitotic cell cycle OBSOLETE. A cell cycle process that regulates transcription such that the target genes are transcribed as part of the S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl S-phase-specific transcription in mitotic cell cycle|regulation of transcription from RNA polymerase II promoter during S-phase of mitotic cell cycle|regulation of transcription involved in S-phase of mitotic cell cycle|regulation of transcription involved in S phase of mitotic cell cycle|S-specific transcription in mitotic cell cycle This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'. GO:0000083|GO:0006357 True biological_process owl:Class GO:0006852 biolink:NamedThing obsolete mitochondrial sodium/calcium ion exchange OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mitochondrial sodium/calcium ion exchange|mitochondrial sodium/calcium exchange This term was made obsolete because it represents function rather than a process. GO:0006814|GO:0006839|GO:0005432|GO:0006816 True biological_process owl:Class GO:0045021 biolink:NamedThing obsolete error-free DNA repair OBSOLETE. DNA repair pathways that do not increase the mutation rate above spontaneous background levels, e.g. excision and recombination pathways. tmpzr1t_l9r_go_relaxed.owl error-free DNA repair This term was made obsolete because 'error-free' does not correspond to a repair mechanism, and the term has been superseded by more specific terms. GO:0042275|GO:0070987 True biological_process owl:Class GO:0051115 biolink:NamedThing obsolete enzyme active site formation via 1'-(phospho-5'-uridine)-L-histidine OBSOLETE. The transient uridylylation of peptidyl-histidine to form 1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0372 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:8794735. GO:0017103 True biological_process owl:Class GO:0016536 biolink:NamedThing obsolete cyclin-dependent protein kinase 5 activator regulator activity OBSOLETE. Modulation of the activity of cyclin-dependent protein kinase 5 activator. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein kinase 5 activator, intrinsic regulator activity|cyclin-dependent protein kinase 5 activator regulator activity This term was made obsolete because it refers to a specific gene product. True molecular_function owl:Class GO:0005301 biolink:NamedThing obsolete valine/tyrosine/tryptophan permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl valine/tyrosine/tryptophan permease activity|hydrogen/valine-tyrosine-tryptophan transporter This term was made obsolete because it represents a multifunctional gene product. GO:0015196|GO:0005304|GO:0005302|GO:0022857 True molecular_function owl:Class GO:0003717 biolink:NamedThing obsolete RNA polymerase II transcription termination factor activity OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl Pol II transcription termination factor activity|RNA polymerase II transcription termination factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006369 True molecular_function owl:Class GO:0001690 biolink:NamedThing obsolete cytoplasmic dynein light chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytoplasmic dynein light chain GO:0005868 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0004211 biolink:NamedThing obsolete caspase-9 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-9 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1900061 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in calcium-mediated signaling. tmpzr1t_l9r_go_relaxed.owl upregulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signaling|upregulation of global transcription from RNA polymerase II promoter of calcium signaling|positive regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|stimulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling|activation of global transcription from RNA polymerase II promoter of calcium-mediated signaling|stimulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|positive regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|stimulation of transcription from RNA polymerase II promoter of calcium signalling|up regulation of transcription from RNA polymerase II promoter of calcium signalling|activation of transcription from RNA polymerase II promoter of calcium-mediated signalling|up-regulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling|up regulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling|activation of global transcription from RNA polymerase II promoter of calcium-mediated signalling|up regulation of global transcription from RNA polymerase II promoter of calcium ion signaling|activation of transcription from RNA polymerase II promoter of calcium signalling|stimulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling|up-regulation of global transcription from RNA polymerase II promoter of calcium signaling|stimulation of transcription from RNA polymerase II promoter of calcium signaling|up-regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|up-regulation of global transcription from RNA polymerase II promoter of calcium signalling|up-regulation of transcription from RNA polymerase II promoter of calcium ion signaling|positive regulation of global transcription from Pol II promoter of calcium-mediated signaling|positive regulation of global transcription from Pol II promoter of calcium-mediated signalling|positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling|positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium signaling|up regulation of global transcription from RNA polymerase II promoter of calcium signalling|stimulation of transcription from RNA polymerase II promoter of calcium ion signaling|positive regulation of transcription from Pol II promoter of calcium-mediated signalling|upregulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling|upregulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|positive regulation of transcription from RNA polymerase II promoter of calcium ion signaling|positive regulation of global transcription from Pol II promoter of calcium ion signaling|activation of global transcription from RNA polymerase II promoter of calcium signalling|up-regulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling|positive regulation of global transcription from Pol II promoter of calcium signaling|positive regulation of transcription from RNA polymerase II promoter of calcium signalling|positive regulation of transcription from RNA polymerase II promoter of calcium signaling|up-regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium signalling|positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium ion signaling|upregulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling|positive regulation of transcription from Pol II promoter of calcium signaling|positive regulation of global transcription from Pol II promoter of calcium signalling|upregulation of transcription from RNA polymerase II promoter of calcium signaling|upregulation of transcription from RNA polymerase II promoter of calcium signalling|up regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|activation of transcription from RNA polymerase II promoter of calcium signaling|positive regulation of transcription from Pol II promoter of calcium-mediated signaling|up regulation of transcription from RNA polymerase II promoter of calcium ion signaling|activation of global transcription from RNA polymerase II promoter of calcium signaling|positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signalling|up regulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling|stimulation of global transcription from RNA polymerase II promoter of calcium signalling|activation of global transcription from RNA polymerase II promoter of calcium ion signaling|stimulation of global transcription from RNA polymerase II promoter of calcium signaling|stimulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|activation of transcription from RNA polymerase II promoter of calcium-mediated signaling|upregulation of global transcription from RNA polymerase II promoter of calcium signalling|up-regulation of global transcription from RNA polymerase II promoter of calcium ion signaling|up-regulation of transcription from RNA polymerase II promoter of calcium signalling|up regulation of global transcription from RNA polymerase II promoter of calcium signaling|up-regulation of transcription from RNA polymerase II promoter of calcium signaling|positive regulation of transcription from Pol II promoter of calcium signalling|activation of transcription from RNA polymerase II promoter of calcium ion signaling|upregulation of transcription from RNA polymerase II promoter of calcium ion signaling|upregulation of global transcription from RNA polymerase II promoter of calcium ion signaling|stimulation of global transcription from RNA polymerase II promoter of calcium ion signaling|positive regulation of transcription from Pol II promoter of calcium ion signaling|up regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|up regulation of transcription from RNA polymerase II promoter of calcium signaling This term was made obsolete because it represents a GO-CAM model. GO:0045944|GO:0019722 dph 2012-01-26T01:42:53Z True biological_process owl:Class GO:0052461 biolink:NamedThing obsolete modulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl modulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0000230 biolink:NamedThing obsolete nuclear mitotic chromosome OBSOLETE. A chromosome found in the nucleus during mitosis. tmpzr1t_l9r_go_relaxed.owl nuclear mitotic chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0000794 True cellular_component owl:Class GO:0052517 biolink:NamedThing obsolete positive regulation by organism of symbiont non-apoptotic programmed cell death OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by a non-apoptotic pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont non-apoptotic programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1990371 biolink:NamedThing obsolete process resulting in tolerance to phenol OBSOLETE. A response that results in a state of tolerance to phenol. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a clear process. tt 2014-04-23T22:32:48Z True biological_process owl:Class GO:1990981 biolink:NamedThing obsolete regulation of protein localization to cell division site involved in cell separation after cytokinesis OBSOLETE. A regulation of protein localization to cell division site involved in cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. vw 2016-08-21T19:43:21Z True biological_process owl:Class GO:0016357 biolink:NamedThing obsolete pyrethroid susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pyrethroid susceptibility/resistance GO:0046684 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0004244 biolink:NamedThing obsolete mitochondrial inner membrane peptidase activity OBSOLETE. Catalysis of the maturation of mitochondrial precursor proteins delivered to the intermembrane space. tmpzr1t_l9r_go_relaxed.owl IMP|mitochondrial inner membrane peptidase activity GO:0004175 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004261 biolink:NamedThing obsolete cathepsin G activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity similar to chymotrypsin C. tmpzr1t_l9r_go_relaxed.owl cathepsin G activity|neutral proteinase activity|chymotrypsin-like proteinase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0042315 biolink:NamedThing obsolete cytosol nonspecific dipeptidase activity OBSOLETE. Catalysis of the hydrolysis of dipeptides, preferentially hydrophobic dipeptides including prolyl amino acids. tmpzr1t_l9r_go_relaxed.owl glycyl-L-leucine hydrolase activity|N2-beta-alanylarginine dipeptidase activity|L-amino-acyl-L-amino-acid hydrolase activity|human cytosolic non-specific dipeptidase activity|prolylglycine dipeptidase activity|glycyl-leucine dipeptidase activity|Gly-Leu hydrolase activity|L-prolylglycine dipeptidase activity|peptidase A activity|iminodipeptidase activity|glycylleucine peptidase activity|glycyl-glycine dipeptidase activity|prolyl dipeptidase activity|diglycinase activity|cytosol nonspecific dipeptidase activity|Pro-X dipeptidase activity|non-specific dipeptidase activity|N(2)-beta-alanylarginine dipeptidase activity|glycylleucine hydrolase activity|glycyl-L-leucine dipeptidase activity|glycyl-L-leucine peptidase activity|glycylleucine dipeptide hydrolase activity|prolinase activity|cytosol non-specific dipeptidase activity GO:0016805 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0007071 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase III promoter during mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase III promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase III promoter, mitotic|negative regulation of transcription from Pol III promoter during mitosis|down regulation of transcription from RNA polymerase III promoter during mitosis|down-regulation of transcription from RNA polymerase III promoter during mitosis|mitotic repression of transcription from Pol III promoter|downregulation of transcription from RNA polymerase III promoter during mitosis|inhibition of transcription from RNA polymerase III promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0016480 True biological_process owl:Class GO:0015997 biolink:NamedThing obsolete ubiquinone biosynthetic process monooxygenase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ubiquinone formation monooxygenase activity|ubiquinone biosynthetic process monooxygenase activity|coenzyme Q biosynthesis monooxygenase activity|ubiquinone anabolism monooxygenase activity|coenzyme Q biosynthetic process monooxygenase activity|ubiquinone synthesis monooxygenase activity This term was made obsolete because it incorporates biological process information. True molecular_function owl:Class GO:0016676 biolink:NamedThing obsolete oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on haem group of donors, oxygen as acceptor https://github.com/geneontology/go-ontology/issues/20923 EC:1.9.3.- This term was obsoleted because Enzyme Commission (EC) has rehoused all its descendant classes, and this is now a grouping term with not children. True molecular_function owl:Class GO:0071534 biolink:NamedThing obsolete zf-TRAF domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a TRAF-type zinc finger (zf-TRAF) domain interaction. tmpzr1t_l9r_go_relaxed.owl zinc finger TRAF-type domain-mediated complex assembly|zinc-finger-TRAF domain-mediated complex assembly|TRAF-type zinc finger domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T02:40:50Z True biological_process owl:Class GO:0075168 biolink:NamedThing obsolete regulation of protein kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont protein kinase-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1900531 biolink:NamedThing obsolete regulation of cell shape involved in cellular response to heat OBSOLETE. Any regulation of cell shape that is involved in cellular response to heat. tmpzr1t_l9r_go_relaxed.owl regulation of cell shape of cellular response to heat|regulation of cell shape involved in cellular response to heat|regulation of cell shape of cellular response to heat stress This term was obsoleted at the TermGenie Gatekeeper stage. al 2012-05-08T01:51:00Z True biological_process owl:Class GO:0045164 biolink:NamedThing obsolete secretin (sensu Mammalia) OBSOLETE. Secretin is a hormone that takes part in the digestion process. It also has effects on organs other than gastrointestinal tract. tmpzr1t_l9r_go_relaxed.owl secretin (sensu Mammalia) This term was made obsolete because it represents a gene product rather than a molecular function. GO:0046659 True molecular_function owl:Class GO:0033804 biolink:NamedThing obsolete glycine/sarcosine N-methyltransferase activity OBSOLETE. Catalysis of the reactions: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine, and S-adenosyl-L-methionine + sarcosine = S-adenosyl-L-homocysteine + N,N-dimethylglycine. tmpzr1t_l9r_go_relaxed.owl glycine sarcosine N-methyltransferase activity|S-adenosyl-L-methionine:sarcosine N-methyltransferase activity|glycine-sarcosine methyltransferase activity|ApGSMT|GMT|glycine/sarcosine N-methyltransferase activity|GSMT This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0017174|GO:0052730 True molecular_function owl:Class GO:1900043 biolink:NamedThing obsolete leptin-mediated signaling pathway involved in negative regulation of appetite OBSOLETE. Any leptin-mediated signaling pathway that is involved in negative regulation of appetite. tmpzr1t_l9r_go_relaxed.owl adipocytokine signaling pathway of appetite suppression|adipocytokine signaling pathway of down-regulation of appetite|leptin-mediated signaling pathway of negative regulation of hunger|leptin-mediated signaling pathway of appetite suppression|leptin-mediated signalling pathway of negative regulation of hunger|leptin-mediated signaling pathway of inhibition of appetite|adipocytokine signaling pathway of negative regulation of appetite|leptin-mediated signaling pathway of down regulation of appetite|adipocytokine signaling pathway of down regulation of appetite|leptin-mediated signalling pathway of downregulation of appetite|leptin-mediated signaling pathway of downregulation of appetite|leptin-mediated signaling pathway involved in negative regulation of appetite|leptin-mediated signalling pathway of appetite suppression|leptin-mediated signalling pathway of down-regulation of appetite|adipocytokine signaling pathway of downregulation of appetite|leptin-mediated signaling pathway of negative regulation of appetite|leptin-mediated signaling pathway of down-regulation of appetite|leptin-mediated signalling pathway of inhibition of appetite|leptin-mediated signalling pathway of down regulation of appetite|adipocytokine signaling pathway of negative regulation of hunger|leptin-mediated signalling pathway of negative regulation of appetite|adipocytokine signaling pathway of inhibition of appetite This term was obsoleted at the TermGenie Gatekeeper stage. vk 2012-01-19T11:10:22Z True biological_process owl:Class GO:0042991 biolink:NamedThing obsolete transcription factor import into nucleus OBSOLETE. The directed movement of a transcription factor from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl transcription factor import into cell nucleus|transcription factor transport from cytoplasm to nucleus|transcription factor-nucleus import The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus. GO:0006606 True biological_process owl:Class GO:0052503 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the symbiont calcium-dependent protein kinase pathway during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of defense-related symbiont CDPK pathway by organism|positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0060849 biolink:NamedThing obsolete regulation of transcription involved in lymphatic endothelial cell fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0060838|GO:0006357 dph 2009-08-12T11:19:14Z True biological_process owl:Class GO:1900466 biolink:NamedThing obsolete positive regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of arginine biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl upregulation of arginine formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of arginine anabolism by positive regulation of transcription from RNA polymerase II promoter|activation of arginine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of arginine formation by positive regulation of transcription from RNA polymerase II promoter|activation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of arginine formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of arginine synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of arginine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of arginine formation by positive regulation of transcription from RNA polymerase II promoter|up regulation of arginine anabolism by positive regulation of transcription from RNA polymerase II promoter|up-regulation of arginine anabolism by positive regulation of transcription from RNA polymerase II promoter|upregulation of arginine anabolism by positive regulation of transcription from RNA polymerase II promoter|upregulation of arginine synthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of arginine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|activation of arginine synthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of arginine synthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of arginine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up-regulation of arginine synthesis by positive regulation of transcription from RNA polymerase II promoter|activation of arginine anabolism by positive regulation of transcription from RNA polymerase II promoter|up-regulation of arginine formation by positive regulation of transcription from RNA polymerase II promoter|upregulation of arginine biosynthesis by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T07:38:14Z True biological_process owl:Class GO:0035955 biolink:NamedThing obsolete negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of dipeptide transport by stopping, preventing or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of dipeptide transport by inhibition of transcription from RNA polymerase II promoter|negative regulation of dipeptide transport by negative regulation of transcription from Pol II promoter|negative regulation of dipeptide transport by down-regulation of transcription from RNA polymerase II promoter|negative regulation of dipeptide transport by down regulation of transcription from RNA polymerase II promoter|negative regulation of dipeptide transport by downregulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0035111 biolink:NamedThing obsolete leg joint morphogenesis OBSOLETE. The process in which the anatomical structures of a leg joint are generated and organized. The leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner. One example is the knee, which separates the leg tibia and femur. tmpzr1t_l9r_go_relaxed.owl leg joint morphogenesis This term was made obsolete because leg is a mechano-functional grouping, and having both 'leg morphogenesis' and 'hindlimb morphogenesis' terms causes errors in querying. GO:0036023|GO:0016348 True biological_process owl:Class GO:0048516 biolink:NamedThing obsolete trichome initiation (sensu Magnoliophyta) OBSOLETE. Processes causing the differentiation of an epidermal cell into a trichome cell; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398). tmpzr1t_l9r_go_relaxed.owl trichome initiation (sensu Magnoliophyta) This term was made obsolete because more appropriate terms were created. GO:0048629 True biological_process owl:Class GO:0003791 biolink:NamedThing obsolete membrane associated actin binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl membrane associated actin binding This term was made obsolete because it contains both component and function information. GO:0016020|GO:0003779 True molecular_function owl:Class GO:0031376 biolink:NamedThing obsolete cytosolic type II fatty acid synthase complex OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity, located in the cytosol. tmpzr1t_l9r_go_relaxed.owl cytosolic type II fatty acid synthase complex|cytosolic type II FAS complex True cellular_component owl:Class GO:0005181 biolink:NamedThing obsolete glycopeptide hormone OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl glycopeptide hormone This term was made obsolete because it describes a type of hormone rather than a molecular function. GO:0005179 True molecular_function owl:Class GO:0003813 biolink:NamedThing obsolete classical-complement-pathway C3/C5 convertase activity OBSOLETE. Catalysis of the selective cleavage of Arg-Ser bond in complement component C3 alpha-chain to form C3a and C3b, and Arg bond in complement component C5 alpha-chain to form C5a and C5b. tmpzr1t_l9r_go_relaxed.owl complement C2 activity|C4b,2a,3b|C3 convertase activity|classical-complement-pathway C3/C5 convertase activity|C4b,2a|C5 convertase activity|complement C3 convertase activity|complement C42|C423|C42 GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0106180 biolink:NamedThing obsolete translocase activty of hydrons OBSOLETE. Catalysis of the translocation of hydrons (hydron being the general name for H+ in its natural abundance). tmpzr1t_l9r_go_relaxed.owl EC:7.1.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:48:44Z True molecular_function owl:Class GO:0106202 biolink:NamedThing obsolete translocase activity acting on amino acids and peptides linked to a decarboxylation reaction OBSOLETE. Catalysis of the translocation of amno acids and peptides linked to a decarboxylation reaction. tmpzr1t_l9r_go_relaxed.owl EC:7.4.4.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:30:36Z True molecular_function owl:Class GO:0001090 biolink:NamedThing obsolete transcription factor activity, TFIIH-class binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIH class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIIH-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2010-10-28T02:28:01Z True molecular_function owl:Class GO:0055061 biolink:NamedThing obsolete di-, tri-valent inorganic anion homeostasis OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent inorganic anions within an organism or cell. tmpzr1t_l9r_go_relaxed.owl di-, tri-valent inorganic anion homeostasis This term was made obsolete because it has been split. GO:0072506|GO:0072505 True biological_process owl:Class GO:0001686 biolink:NamedThing obsolete axonemal dynein light chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl axonemal dynein light chain GO:0005858 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0052016 biolink:NamedThing obsolete catabolism by symbiont of host glucan OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of glucan molecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host glucan https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:2000046 biolink:NamedThing obsolete regulation of G2 phase of mitotic cell cycle OBSOLETE. Any process that modulates the frequency, rate or extent of G2 phase of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of G2 phase of mitotic cell cycle This term was made obsolete because we felt that phases themselves are not being regulated, it's rather the transitions between phases. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transiition. GO:0010389 tb 2010-08-19T09:19:18Z True biological_process owl:Class GO:0006466 biolink:NamedThing obsolete protein disulfide-isomerase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protein disulfide-isomerase reaction|protein disulphide-isomerase reaction GO:0003756 This term was made obsolete because it presents a molecular function. True biological_process owl:Class GO:0007203 biolink:NamedThing obsolete phosphatidylinositol-4,5-bisphosphate hydrolysis OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol-4,5-bisphosphate hydrolysis This term was made obsolete because hydrolysis is a reaction, not a process. GO:0004435 True biological_process owl:Class GO:0007360 biolink:NamedThing obsolete positive regulation of posterior gap gene transcription OBSOLETE. The activation of genes encoding transcription factors in the posterior region of an insect embryo by a combination of maternal regulatory signals and interactions among themselves; exemplified by the activation of expression of the Drosophila knirps gene. tmpzr1t_l9r_go_relaxed.owl stimulation of posterior gap gene transcription|up regulation of posterior gap gene transcription|upregulation of posterior gap gene transcription|activation of posterior gap gene|up-regulation of posterior gap gene transcription|activation of posterior gap gene transcription|knirps activation This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0045155 biolink:NamedThing obsolete electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity OBSOLETE. Enables the directed movement of electrons from the CoQH2-cytochrome c reductase complex and the cytochrome c oxidase complex. tmpzr1t_l9r_go_relaxed.owl cytochrome|cytochrome c This term was obsoleted because it was not clearly defined, it has no corresponding EC or RHEA. True molecular_function owl:Class GO:1903157 biolink:NamedThing obsolete iron ion transmembrane transporter activity involved in iron ion import into cell OBSOLETE. Any iron ion transmembrane transporter activity that is involved in iron ion import into cell. tmpzr1t_l9r_go_relaxed.owl iron transporter activity involved in iron ion import into cell|zinc, iron permease activity involved in iron ion import into cell|multicopper ferroxidase iron transport mediator activity involved in iron ion import into cell|transmembrane iron permease activity involved in iron import into cell|multicopper ferroxidase iron transport mediator activity involved in iron import into cell|zinc, iron permease activity involved in iron import into cell|transmembrane iron permease activity involved in iron ion import into cell|iron transporter activity involved in iron import into cell|transmembrane iron ion permease activity involved in iron ion import into cell|iron ion transmembrane transporter activity involved in iron ion import into cell|iron ion transmembrane transporter activity involved in iron import into cell|transmembrane iron ion permease activity involved in iron import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:16Z True molecular_function owl:Class GO:1902186 biolink:NamedThing obsolete regulation of viral release from host cell OBSOLETE. Any process that modulates the frequency, rate or extent of viral release from host cell. tmpzr1t_l9r_go_relaxed.owl regulation of viral release|regulation of viral exit|regulation of release of virus from host|regulation of viral shedding https://github.com/geneontology/go-ontology/issues/22168 GO:0019076 This term was obsoleted because there is no evidence that it is a regulated process. ss 2013-06-04T03:54:03Z True biological_process owl:Class GO:0030106 biolink:NamedThing obsolete MHC class I receptor activity OBSOLETE. A major histocompatibility complex class I receptor. These display processed antigens from the endocytosed bacteria. MHC class I proteins can form complexes with processed antigen peptides only if the antigen is synthesized in the same cell. As a consequence, T lymphocytes can only bind to class-I-positive cells that are synthesizing the antigen (e.g. virus-infected cells). tmpzr1t_l9r_go_relaxed.owl MHC class I receptor activity|class I major histocompatibility complex antigen|major histocompatibility complex class I receptor This term was made obsolete because the definition is ambiguous and contains incorrect information. To update annotations of gene products that act as receptors for MHC class I protein complexes, use the molecular function term 'MHC class I receptor activity ; GO:0032393'; to update annotations of gene products which are components of MHC class I protein complexes, use the cellular component term 'MHC class I protein complex ; GO:0042612'. GO:0042612|GO:0032393 True molecular_function owl:Class GO:0004204 biolink:NamedThing obsolete caspase-5 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-5 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051182 biolink:NamedThing obsolete coenzyme transport OBSOLETE. The directed movement of a coenzyme into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A coenzyme is any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0005646 biolink:NamedThing obsolete importin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl karyopherin|importin This term was made obsolete because it represents a single gene product and not a complex. GO:0017056|GO:0005634|GO:0005643|GO:0005737 True cellular_component owl:Class GO:1904162 biolink:NamedThing obsolete 5'-3' exodeoxyribonuclease activity involved in UV-damage excision repair OBSOLETE. Any 5'-3' exodeoxyribonuclease activity that is involved in UV-damage excision repair. tmpzr1t_l9r_go_relaxed.owl 5'-3' exodeoxyribonuclease activity involved in UVDE-dependent excision repair|5'-3' exodeoxyribonuclease activity involved in UVER|5'-3' exodeoxyribonuclease activity involved in UV-damaged DNA endonuclease-dependent excision repair|5'-3' exodeoxyribonuclease activity involved in alternative excision repair|5'-3' exodeoxyribonuclease activity involved in AER The reason for obsoletion is that this term represents a biological process within a molecular function. GO:0070914 mah 2015-04-21T14:53:19Z True molecular_function owl:Class GO:0039581 biolink:NamedThing obsolete suppression by virus of host PKR activity via double-stranded RNA binding OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity by binding to double-stranded RNA (dsRNA). Binding of viral proteins to RNA may sequester or alter the RNA so it can not be recognized by host PKR, or may compete with PKR for dsRNA binding. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host PKR activity by binding to dsRNA The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf True biological_process owl:Class GO:0106193 biolink:NamedThing obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a diphosphate OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.2.3.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T16:55:24Z True molecular_function owl:Class GO:0001509 biolink:NamedThing obsolete legumain activity OBSOLETE. Catalysis of the hydrolysis of proteins and small-molecule substrates at Asn-Xaa bonds. tmpzr1t_l9r_go_relaxed.owl citvac|bean endopeptidase activity|proteinase B|hemoglobinase activity|phaseolin activity|PRSC1 gene product (Homo sapiens)|vicilin peptidohydrolase activity|legumain activity|asparaginyl endopeptidase activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004240 biolink:NamedThing obsolete mitochondrial processing peptidase activity OBSOLETE. Catalysis of the release of N-terminal transit peptides from precursor proteins imported into the mitochondrion, typically with Arg in position P2. tmpzr1t_l9r_go_relaxed.owl beta-mitochondrial processing peptidase|matrix processing proteinase|processing enhancing peptidase activity|processing enhancing peptidase (for one of two subunits)|matrix processing peptidase|mitochondrial protein precursor-processing proteinase activity|mitochondrial processing peptidase activity|matrix peptidase|alpha-mitochondrial processing peptidase|MPP GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0075181 biolink:NamedThing obsolete positive regulation of symbiont transcription in response to host OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of its transcription as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22014 This term was obsoleted because it represents a GO-CAM model. GO:0006355 True biological_process owl:Class GO:0038053 biolink:NamedThing obsolete transcription factor activity, estrogen-activated RNA polymerase II transcription factor binding OBSOLETE. Combining with estrogen and transmitting the signal to the transcriptional machinery by binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. For example, estrogen-bound receptors can bind to transcription factor complexes to regulate transcription of genes whose promoters do not contain estrogen response elements. tmpzr1t_l9r_go_relaxed.owl estrogen nuclear receptor activity|estrogen-activated RNA polymerase II transcription factor binding transcription factor activity This term was obsoleted because it represents a GO-CAM model. bf 2011-11-29T02:42:22Z True molecular_function owl:Class GO:0044140 biolink:NamedThing obsolete negative regulation of growth of symbiont on or near host surface OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the increase in the symbiont's size or mass on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-04T04:31:26Z True biological_process owl:Class GO:0075063 biolink:NamedThing obsolete positive regulation of invasive hypha growth OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of symbiont invasive hypha formation within host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont invasive hypha formation within host|positive regulation of symbiont invasive hypha formation in host https://github.com/geneontology/go-ontology/issues/19013 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0015007 biolink:NamedThing obsolete electron carrier, chlorophyll electron transport system OBSOLETE. A molecular entity that serves as an electron acceptor and electron donor in a chlorophyll electron transport system. tmpzr1t_l9r_go_relaxed.owl chlorophyll electron carrier|electron carrier, chlorophyll electron transport system This term was made obsolete because it contains both process and function information. GO:0009767|GO:0009055 True molecular_function owl:Class GO:0009469 biolink:NamedThing obsolete class II cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class II cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0004183 biolink:NamedThing obsolete carboxypeptidase E activity OBSOLETE. Catalysis of the reaction: peptidyl-L-lysine (or peptidyl-L-arginine) + H2O = peptide + L-lysine (or L-arginine). Function is activated by Co2+ and inhibited by 1,10-phenanthroline and other chelating agents. tmpzr1t_l9r_go_relaxed.owl carboxypeptidase H activity|enkephalin convertase activity|carboxypeptidase E activity|enkephalin precursor carboxypeptidase activity|cobalt-stimulated chromaffin granule carboxypeptidase activity|insulin granule-associated carboxypeptidase activity|enkephalin-precursor endopeptidase activity|peptidyl-L-lysine(-L-arginine) hydrolase|membrane-bound carboxypeptidase activity GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0033126 biolink:NamedThing obsolete positive regulation of GTP catabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl positive regulation of GTP catabolism|positive regulation of GTP breakdown|positive regulation of GTP degradation The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0043547 True biological_process owl:Class GO:1902885 biolink:NamedThing obsolete regulation of proteasome-activating ATPase activity OBSOLETE. Any process that modulates the frequency, rate or extent of proteasome-activating ATPase activity. tmpzr1t_l9r_go_relaxed.owl regulation of proteasome channel opening activity|regulation of proteasome channel gating activity|regulation of proteasomal ATPase activity|regulation of ATPase involved in positive regulation of proteasomal protein catabolic process https://github.com/geneontology/go-ontology/issues/20879 This term was obsoleted because it represents a molecular function. di 2014-04-04T17:35:23Z True biological_process owl:Class GO:2000326 biolink:NamedThing obsolete negative regulation of nuclear receptor transcription coactivator activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of ligand-dependent nuclear receptor transcription co-activator activity|negative regulation of ligand-dependent nuclear receptor transcription coactivator activity This term was obsoleted because it represents a molecular function. GO:0140536 vk 2011-01-18T06:30:03Z True biological_process owl:Class RO:0002087 biolink:NamedThing immediately_preceded_by tmpzr1t_l9r_go_relaxed.owl RO:0002087 external immediately_preceded_by GO:0022854 biolink:NamedThing obsolete active large uncharged polar molecule transmembrane transporter activity OBSOLETE. Catalysis of the transfer of a large uncharged polar molecule from one side of the membrane to the other, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl active large uncharged polar molecule transmembrane transporter activity GO:0022804 This term was made obsolete because 'large uncharged polar molecule' is not a useful chemical grouping term. True molecular_function owl:Class GO:0075086 biolink:NamedThing obsolete negative regulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of transmembrane receptor-mediated cAMP signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by host of symbiont transmembrane receptor-mediated cAMP signaling|inhibition by host of symbiont transmembrane receptor-mediated cAMP signal transduction|downregulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1990094 biolink:NamedThing obsolete positive regulation of N-methyl-D-aspartate receptor clustering OBSOLETE. The positive regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of NMDA receptor clustering|positive regulation of N-methyl-D-aspartate receptor clustering This term was obsoleted at the TermGenie Gatekeeper stage. sl 2013-05-06T17:44:00Z True biological_process owl:Class GO:0034725 biolink:NamedThing obsolete DNA replication-dependent nucleosome disassembly OBSOLETE. The controlled breakdown of nucleosomes on newly replicated DNA, coupled to strand elongation. tmpzr1t_l9r_go_relaxed.owl DNA replication-dependent chromatin disassembly https://github.com/geneontology/go-ontology/issues/22133 This term was obsoleted because it did not describe a different process from that described by its parent. GO:0006337 True biological_process owl:Class GO:0052516 biolink:NamedThing obsolete positive regulation by organism of symbiont jasmonic acid-mediated defense response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the jasmonic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont jasmonic acid-mediated defense response|induction by organism of symbiont jasmonic acid-mediated defense response|positive regulation by organism of symbiont JA-mediated defense response|induction by organism of symbiont JA-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0060807 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that ultimately results in a cell being specified to adopt a definitive endodermal cell fate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0001714 dph 2009-08-06T02:14:09Z True biological_process owl:Class GO:0052199 biolink:NamedThing obsolete negative regulation of catalytic activity in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of enzyme activity in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition of enzyme activity in other organism|down-regulation of enzyme activity in other organism during symbiotic interaction|negative regulation of enzyme activity in other organism during symbiotic interaction|down regulation of enzyme activity in other organism during symbiotic interaction|inhibition of enzyme activity in other organism during symbiotic interaction|downregulation of enzyme activity in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it was an unnecessary grouping term. True biological_process owl:Class GO:1903291 biolink:NamedThing obsolete positive regulation of ATP catabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATP catabolic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of ATP degradation|up-regulation of ATP catabolic process|positive regulation of ATP catabolism|up-regulation of ATP catabolism|activation of ATP breakdown|activation of ATP catabolic process|up regulation of ATP breakdown|positive regulation of ATP degradation|activation of ATP degradation|up regulation of ATP degradation|up-regulation of ATP hydrolysis|upregulation of ATP degradation|positive regulation of ATP breakdown|up regulation of ATP catabolic process|upregulation of ATP catabolic process|activation of ATP hydrolysis|upregulation of ATP breakdown|positive regulation of ATP hydrolysis|up regulation of ATP hydrolysis|up regulation of ATP catabolism|upregulation of ATP catabolism|activation of ATP catabolism|up-regulation of ATP breakdown|upregulation of ATP hydrolysis The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0032781 rl 2014-08-11T14:36:55Z True biological_process owl:Class GO:1901619 biolink:NamedThing obsolete tRNA methylation in response to nitrogen starvation OBSOLETE. The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule as a result of deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl al 2012-11-13T14:36:00Z True biological_process owl:Class GO:0052149 biolink:NamedThing obsolete modulation by symbiont of host peptidase activity OBSOLETE. The process in which an organism effects a change in host peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host protease activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0000757 biolink:NamedThing obsolete signal transduction involved in regulation of conjugation with mutual genetic exchange OBSOLETE. A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation without cellular fusion. tmpzr1t_l9r_go_relaxed.owl signal transduction involved in conjugation without cellular fusion https://github.com/geneontology/go-ontology/issues/15815 This term was obsoleted because its label and definitions were not clear. It had never been used for annotation. True biological_process owl:Class GO:0052312 biolink:NamedThing obsolete modulation of transcription in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of transcription in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of transcription in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0015363 biolink:NamedThing obsolete dicarboxylate (succinate/fumarate/malate) antiporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dicarboxylate (succinate/fumarate/malate) antiporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015140|GO:0015138|GO:0015141|GO:0005310|GO:0015297 True molecular_function owl:Class GO:0017043 biolink:NamedThing obsolete adrenocorticotropin OBSOLETE. A polypeptide hormone which stimulates the adrenal cortex to synthesize and secrete glucocorticoid hormones. tmpzr1t_l9r_go_relaxed.owl adrenocorticotropin|corticotropin This term was made obsolete because it represents a gene product. GO:0046886|GO:0046887|GO:0005102 True molecular_function owl:Class GO:0061464 biolink:NamedThing obsolete plasma membrane part of cell-substrate junction OBSOLETE. The part of the plasma membrane that contributes to the structure of a cell-substrate junction. tmpzr1t_l9r_go_relaxed.owl The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM. dph 2012-10-19T11:04:48Z True cellular_component owl:Class GO:1900202 biolink:NamedThing obsolete negative regulation of spread of virus in host, cell to cell OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of spread of virus in host, cell to cell. tmpzr1t_l9r_go_relaxed.owl negative regulation of cell to cell spread of virus within host|down regulation of viral spread within host, cell to cell|inhibition of cell to cell spread of virus within host|downregulation of spread of virus in host, cell to cell|downregulation of spread of virus within host, cell to cell|negative regulation of spread of virus in host, cell to cell|down-regulation of spread of virus within host, cell to cell|inhibition of viral spread within host, cell to cell|downregulation of viral spread within host, cell to cell|negative regulation of spread of virus within host, cell to cell|downregulation of cell to cell spread of virus within host|inhibition of spread of virus within host, cell to cell|negative regulation of viral spread within host, cell to cell|down-regulation of spread of virus in host, cell to cell|down regulation of cell to cell spread of virus within host|down regulation of spread of virus in host, cell to cell|down regulation of spread of virus within host, cell to cell|inhibition of spread of virus in host, cell to cell|down-regulation of cell to cell spread of virus within host|down-regulation of viral spread within host, cell to cell This term was obsoleted at the TermGenie Gatekeeper stage. pm 2012-03-21T01:15:51Z True biological_process owl:Class GO:0004241 biolink:NamedThing obsolete alpha-mitochondrial processing peptidase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl alpha-mitochondrial processing peptidase|alpha-MPP This term was made obsolete because it represents a gene product. GO:0005739|GO:0004222 True molecular_function owl:Class GO:0045559 biolink:NamedThing obsolete TRAIL receptor 2 biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of TRAIL-R2 (TNF-related apoptosis inducing ligand receptor 2), which engages a caspase-dependent apoptotic pathway and mediates apoptosis via the intracellular adaptor molecule FADD/MORT1. tmpzr1t_l9r_go_relaxed.owl TRAIL receptor 2 formation|TRAIL receptor 2 anabolism|TRAIL receptor 2 biosynthesis|TRAIL receptor 2 synthesis|tumor necrosis factor receptor superfamily member 10B biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:2001221 biolink:NamedThing obsolete positive regulation of G2 phase of mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of G2 phase of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of G2 phase of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. yaf 2011-11-17T03:28:48Z True biological_process owl:Class GO:0030806 biolink:NamedThing obsolete negative regulation of cyclic nucleotide catabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways resulting in the breakdown of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl negative regulation of cyclic nucleotide degradation|downregulation of cyclic nucleotide catabolic process|negative regulation of cyclic nucleotide catabolism|down-regulation of cyclic nucleotide catabolic process|negative regulation of cyclic nucleotide breakdown|inhibition of cyclic nucleotide catabolic process|down regulation of cyclic nucleotide catabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0075021 biolink:NamedThing obsolete cAMP-mediated activation of appressorium formation OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont cAMP mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cyclic AMP mediated activation of appressorium formation This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:1904084 biolink:NamedThing obsolete negative regulation of epiboly OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of epiboly. tmpzr1t_l9r_go_relaxed.owl down-regulation of epiboly|down regulation of epiboly|negative regulation of epiboly|downregulation of epiboly|inhibition of epiboly This term was obsoleted at the TermGenie Gatekeeper stage. dos 2015-03-25T10:53:40Z True biological_process owl:Class GO:0004228 biolink:NamedThing obsolete gelatinase A activity OBSOLETE. Catalysis of the cleavage of gelatin type I and collagen types IV, V, VII, X. Cleaves the collagen-like sequence Pro-Gln-Gly-Ile-Ala-Gly-Gln at the Gly-Ile bond. tmpzr1t_l9r_go_relaxed.owl 72-kDa gelatinase activity|3/4 collagenase activity|MMP-2|matrix metalloproteinase 5|72 kDa gelatinase type A|matrix metalloproteinase 2 activity|collagenase type IV|type IV collagen metalloproteinase|type IV collagenase activity|collagenase IV|MMP 2|gelatinase A activity|type IV collagenase/gelatinase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030355 biolink:NamedThing obsolete small nucleolar ribonucleoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl snoRNP|small nucleolar ribonucleoprotein GO:0005732 This term was made obsolete because it describes a cellular component rather than a molecular function. True molecular_function owl:Class GO:0100064 biolink:NamedThing obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0015543 biolink:NamedThing obsolete lactose/glucose efflux transporter activity OBSOLETE. Catalysis of the reaction: glucose or lactose(in) = glucose or lactose(out). tmpzr1t_l9r_go_relaxed.owl lactose/glucose efflux transporter activity This term was made obsolete because it represents two molecular functions. GO:0015155 True molecular_function owl:Class GO:0051197 biolink:NamedThing obsolete positive regulation of coenzyme metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme. tmpzr1t_l9r_go_relaxed.owl activation of coenzyme metabolic process|up-regulation of coenzyme metabolic process|up regulation of coenzyme metabolic process|upregulation of coenzyme metabolic process|positive regulation of coenzyme and prosthetic group metabolism|positive regulation of coenzyme and prosthetic group metabolic process|positive regulation of coenzyme metabolism|stimulation of coenzyme metabolic process 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0070216 biolink:NamedThing obsolete MDM4 binding OBSOLETE. Binding to an isoform of the MDM4 protein, a negative regulator of p53. tmpzr1t_l9r_go_relaxed.owl MDM4 binding|MDMX binding GO:0097371 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:1904993 biolink:NamedThing obsolete positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle OBSOLETE. Any positive regulation of cyclin-dependent protein serine/threonine kinase activity that is involved in positive regulation of G2/M transition of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl up regulation of cyclin-dependent protein kinase activity involved in positive regulation of mitotic entry|up-regulation of cyclin-dependent protein kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle|upregulation of cyclin-dependent protein kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle|positive regulation of CDK activity involved in positive regulation of mitotic entry|positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in positive regulation of mitotic entry|activation of cyclin-dependent protein kinase activity involved in positive regulation of mitotic entry|upregulation of cyclin-dependent protein kinase activity involved in positive regulation of mitotic entry|stimulation of cyclin-dependent protein kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle|stimulation of cyclin-dependent protein kinase activity involved in positive regulation of mitotic entry|positive regulation of CDK activity involved in positive regulation of G2/M transition of mitotic cell cycle|up regulation of cyclin-dependent protein kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle|activation of cyclin-dependent protein kinase activity involved in positive regulation of G2/M transition of mitotic cell cycle|up-regulation of cyclin-dependent protein kinase activity involved in positive regulation of mitotic entry This term was obsoleted at the TermGenie Gatekeeper stage. al 2016-03-01T00:59:41Z True biological_process owl:Class GO:0075048 biolink:NamedThing obsolete cell wall strengthening in symbiont involved in entry into host OBSOLETE. A process in which the cell wall of the symbiont is strengthened or thickened during penetration into the body, tissues, or cells of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl symbiont cell wall strengthening during entry into host|cell wall thickening in symbiont during entry into host|cell wall strengthening in symbiont during entry into host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008163 biolink:NamedThing obsolete DDT resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DDT resistance GO:0046680 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0035636 biolink:NamedThing obsolete multi-organism signaling OBSOLETE. The transfer of information between living organisms. tmpzr1t_l9r_go_relaxed.owl signaling between organisms|signaling with other organism|multi-organism signalling|pheromone signaling This term was obsoleted because it was a grouping term but had no subclasses. bf 2011-01-14T10:11:25Z True biological_process owl:Class GO:0001134 biolink:NamedThing obsolete transcription regulator recruiting activity OBSOLETE. The function of binding to an RNA polymerase (RNAP) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation. tmpzr1t_l9r_go_relaxed.owl transcription factor recruiting transcription factor activity|transcription factor activity, transcription factor recruiting|transcription factor recruiting activity https://github.com/geneontology/go-ontology/issues/18561|https://github.com/geneontology/go-ontology/issues/15577 GO:0003712 The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'. krc 2011-01-20T04:57:59Z True molecular_function owl:Class GO:0075065 biolink:NamedThing obsolete growth or development of symbiont in host cell OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont in host cell This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0003701 biolink:NamedThing obsolete RNA polymerase I transcription factor activity OBSOLETE. Functions to initiate or regulate RNA polymerase I transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006360|GO:0001181 True molecular_function owl:Class GO:0072409 biolink:NamedThing obsolete detection of stimulus involved in meiotic cell cycle checkpoint OBSOLETE. The series of events in which information about a biological process or quality is received and converted into a molecular signal, contributing to a meiotic cell cycle checkpoint. tmpzr1t_l9r_go_relaxed.owl sensing involved in meiotic cell cycle checkpoint|meiotic cell cycle checkpoint sensor mechanism|meiotic cell cycle checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T03:47:50Z True biological_process owl:Class GO:2000687 biolink:NamedThing obsolete negative regulation of rubidium ion transmembrane transporter activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of rubidium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of rubidium cation transmembrane transporter activity|negative regulation of rubidium transmembrane transporter activity|negative regulation of Rb+ transmembrane transporter activity This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-11T09:27:32Z True biological_process owl:Class GO:0030465 biolink:NamedThing obsolete autophagic death (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl autophagic death (sensu Fungi) This term was made obsolete because a more correct term has been created. GO:0048102 True biological_process owl:Class GO:0005695 biolink:NamedThing obsolete chromatid OBSOLETE. One of the two daughter strands of a duplicated chromosome that become apparent between early prophase and metaphase in mitosis and between diplotene and second metaphase in meiosis. tmpzr1t_l9r_go_relaxed.owl chromatid This term was made obsolete because it is not a unique subcellular component, i.e. the difference between this term and 'chromosome' is based on temporal and process distinctions. GO:0005694|GO:0000793|GO:0000794 True cellular_component owl:Class GO:0052181 biolink:NamedThing obsolete modulation by host of symbiont defense response OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the resistance gene-dependent defense response of the symbiont. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's defense response. True biological_process owl:Class GO:0075705 biolink:NamedThing obsolete viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane OBSOLETE. The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and the process ends when the viral nucleic acid is released into the host cytoplasm by its injection through the endosome membrane. tmpzr1t_l9r_go_relaxed.owl viral penetration via endocytosis followed by genetic injection through the endosome membrane|viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane This term was made obsolete because it doesn't represent a genuine process. The term injection is mostly used for prokaryotic viruses where there is no endocytosis. jl 2009-04-23T02:08:06Z True biological_process owl:Class GO:1904164 biolink:NamedThing obsolete negative regulation of triglyceride homeostasis OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of triglyceride homeostasis. tmpzr1t_l9r_go_relaxed.owl down-regulation of triacylglycerol homeostasis|inhibition of triglyceride homeostasis|downregulation of triglyceride homeostasis|down-regulation of triglyceride homeostasis|inhibition of triacylglycerol homeostasis|negative regulation of triacylglycerol homeostasis|downregulation of triacylglycerol homeostasis|down regulation of triacylglycerol homeostasis|down regulation of triglyceride homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. rph 2015-04-22T11:04:49Z True biological_process owl:Class GO:0000232 biolink:NamedThing obsolete nuclear interphase chromosome OBSOLETE. A chromosome found in the nucleus during interphase. tmpzr1t_l9r_go_relaxed.owl nuclear interphase chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0000228 True cellular_component owl:Class GO:0090048 biolink:NamedThing obsolete negative regulation of transcription regulator activity OBSOLETE. Any process that decreases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription regulator activity At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term. tb 2009-08-07T10:25:04Z True biological_process owl:Class GO:0018307 biolink:NamedThing obsolete enzyme active site formation OBSOLETE. The modification of part of an enzyme to form the active site. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 This term was obsoleted because it represents a reaction intermediate, not a biological process, see https://en.wikipedia.org/wiki/Active_site#Mechanisms_involved_in_Catalytic_process. True biological_process owl:Class GO:0061398 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter in response to copper ion OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to an copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0071280|GO:0000122 dph 2012-01-10T09:17:02Z True biological_process owl:Class GO:0030969 biolink:NamedThing obsolete mRNA splicing via endonucleolytic cleavage and ligation involved in unfolded protein response OBSOLETE. The spliceosome-independent cleavage and ligation of the mRNA encoding a UFP-specific transcription factor to remove a single intron, thereby increasing both the translational efficiency of the processed mRNA and the activity of the protein it encodes. tmpzr1t_l9r_go_relaxed.owl IRE1-mediated XBP-1 mRNA splicing|Ire1p-mediated HAC-1 mRNA splicing|unconventional splicing of XBP1 mRNA|XBP1 mRNA splicing under conditions of endoplasmic reticulum (ER) stress|XBP1 mRNA splicing, via endonucleolytic cleavage and ligation|HAC1 mRNA splicing|UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum UPR|spliceosome-independent UFP-specific transcription factor mRNA processing|unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor|UFP-specific transcription factor mRNA processing during unfolded protein response|unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase|UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response|unconventional mRNA splicing involved in UPR|UFP-specific transcription factor mRNA processing involved in ER UPR|non-spliceosomal mRNA splicing in the unfolded protein response pathway|UFP-specific transcription factor mRNA processing involved in ER unfolded protein response|XBP1 mRNA splicing The reason for obsoletion is that this process represent a single step (molecular function) of the IRE1-mediated unfolded protein response (GO:0036498). GO:0036498 True biological_process owl:Class GO:0050662 biolink:NamedThing obsolete coenzyme binding OBSOLETE. Binding to a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group binding interactions that are not all chemically related by the fact that they may be used as a coenzyme. True molecular_function owl:Class GO:0005562 biolink:NamedThing obsolete RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl RNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0030068 biolink:NamedThing obsolete lytic viral life cycle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lytic viral life cycle This term was made obsolete because more specific terms were created. GO:0019058|GO:0044659 True biological_process owl:Class GO:0015041 biolink:NamedThing obsolete electron transfer flavoprotein, group II OBSOLETE. An electron transfer flavoprotein that functions as a housekeeping protein that is synthesized only under certain specific growth conditions and receives electrons from the oxidation of specific substrates, e.g. trimethylamine, carnitine and in nitrogen fixation. tmpzr1t_l9r_go_relaxed.owl electron transfer flavoprotein, group II GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0001312 biolink:NamedThing obsolete replication of extrachromosomal rDNA circles involved in replicative cell aging OBSOLETE. Replication of rDNA following its excision from the chromosome of dividing cells as they age. Extrachromosomal rDNA forms a circle that contains at least one autonomously replicating sequence (ARS), which supports replication independent of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl replication of extrachromosomal rDNA circles during replicative cell aging|replication of extrachromosomal rDNA circles during replicative cell ageing|replication of extrachromosomal ribosomal DNA circles during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0031565 biolink:NamedThing obsolete cytokinesis checkpoint OBSOLETE. A mitotic cell cycle checkpoint that detects a defect in cytokinesis and negatively regulates G2/M transition. tmpzr1t_l9r_go_relaxed.owl contractile ring checkpoint|septin checkpoint The reason this term was made obsolete is that the two terms cytokinesis checkpoint (GO:0031565) and cytokinesis after mitosis (GO:0000078) were conflated in meaning. GO:0044878|GO:0044879 True GO:0000135 biological_process owl:Class GO:0004179 biolink:NamedThing obsolete membrane alanyl aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, Xaa-Xbb- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide. tmpzr1t_l9r_go_relaxed.owl alanine-specific aminopeptidase activity|aminopeptidase N activity|CD13|membrane alanyl aminopeptidase activity|peptidase E activity|aminopeptidase M activity|membrane aminopeptidase I activity|pseudo leucine aminopeptidase activity|membrane alanine aminopeptidase activity|cysteinylglycine dipeptidase activity|cysteinylglycinase activity|alanyl aminopeptidase activity|amino-oligopeptidase activity|L-alanine aminopeptidase activity|particle-bound aminopeptidase activity|microsomal aminopeptidase activity MetaCyc:3.4.11.2-RXN|EC:3.4.11.2 This term was made obsolete because it represents a gene product. GO:0004177|GO:0008235 True molecular_function owl:Class GO:0018779 biolink:NamedThing obsolete 2-chloro-4,6-dihydroxy-1,3,5-triazine hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl 2-chloro-4,6-dihydroxy-1,3,5-triazine hydrolase activity This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. True molecular_function owl:Class GO:0048740 biolink:NamedThing obsolete striated muscle fiber development OBSOLETE. The process whose specific outcome is the amplification and progression of myoblasts (muscle precursor cells) into terminally differentiated multinucleated muscle fibers. tmpzr1t_l9r_go_relaxed.owl striated muscle fibre development|myogenesis|striated muscle fiber development This term was made obsolete because it was an unnecessary grouping term. Striated muscle comprises skeletal and cardiac muscle, but GO has opted not to group the muscle fiber development terms. True biological_process owl:Class GO:0004189 biolink:NamedThing obsolete tubulinyl-Tyr carboxypeptidase activity OBSOLETE. Catalysis of the cleavage of the Glu-Tyr bond to release the C-terminal tyrosine residue from the native tyrosinated tubulin. Inactive on Z-Glu-Tyr. tmpzr1t_l9r_go_relaxed.owl tyrosinotubulin carboxypeptidase activity|tubulinyltyrosine carboxypeptidase activity|tubulinyl-tyrosine carboxypeptidase activity|brain I carboxypeptidase activity|tubulinyl-Tyr carboxypeptidase activity|TTCPase activity|tyrosyltubulin carboxypeptidase activity|soluble carboxypeptidase activity|tubulin carboxypeptidase activity|tubulin-tyrosine carboxypeptidase activity|carboxypeptidase-tubulin activity GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0043946 biolink:NamedThing obsolete positive regulation of catalytic activity in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of enzyme activity in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation of enzyme activity in other organism|up-regulation of enzyme activity in other organism during symbiotic interaction|positive regulation of catalytic activity in other organism during symbiotic interaction|activation of enzyme activity in other organism during symbiotic interaction|upregulation of enzyme activity in other organism during symbiotic interaction|up regulation of enzyme activity in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. GO:0140677 True biological_process owl:Class GO:0032236 biolink:NamedThing obsolete positive regulation of calcium ion transport via store-operated calcium channel activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via a store-operated calcium channel. tmpzr1t_l9r_go_relaxed.owl up-regulation of calcium ion transport via store-operated calcium channel|positive regulation of calcium transport via store-operated calcium channel|up regulation of calcium ion transport via store-operated calcium channel|positive regulation of store-operated calcium channel activity|positive regulation of calcium ion transport via store-operated calcium channel activity|stimulation of calcium ion transport via store-operated calcium channel|upregulation of calcium ion transport via store-operated calcium channel|activation of calcium ion transport via store-operated calcium channel This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0015279 True biological_process owl:Class GO:0016963 biolink:NamedThing obsolete alpha-2 macroglobulin receptor-associated protein activity OBSOLETE. Interaction with the alpha-2 macroglobulin receptor and glycoprotein gp330 forming a complex with the alpha-2 macroglobulin receptor light and heavy chains. tmpzr1t_l9r_go_relaxed.owl alpha-2 macroglobulin receptor-associated protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005102|GO:0005515 True molecular_function owl:Class GO:0003776 biolink:NamedThing obsolete muscle motor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl muscle motor activity GO:0000146 This term was made obsolete because it includes anatomy information. GO:0043292|GO:0006936 True molecular_function owl:Class GO:0075075 biolink:NamedThing obsolete modulation by host of symbiont adenylate cyclase activity OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0000759 biolink:NamedThing obsolete cell morphogenesis involved in conjugation with mutual genetic exchange OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo conjugation without cellular fusion. tmpzr1t_l9r_go_relaxed.owl cellular morphogenesis involved in conjugation without cellular fusion This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0004973 biolink:NamedThing obsolete N-methyl-D-aspartate receptor-associated protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl N-methyl-D-aspartate receptor-associated protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005102|GO:0005515 True molecular_function owl:Class GO:0003816 biolink:NamedThing obsolete complement component C1s activity OBSOLETE. Catalysis of the cleavage of component C4 to C4a and C4b (Arg-Ala bond), and component C2 to C2a and C2b (Lys-Lys or Arg-Lys bond). tmpzr1t_l9r_go_relaxed.owl activated complement C1s|complement subcomponent C1s|complement component C1s activity|C1 esterase activity|complement C1s|C1s esterase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052442 biolink:NamedThing obsolete modulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of symbiont jasmonic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|modulation of defense-related symbiont JA-mediated signal transduction pathway by organism This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0070022 biolink:NamedThing obsolete transforming growth factor beta receptor complex OBSOLETE. A homodimeric receptor complex that consists of two TGF-beta receptor monomers. tmpzr1t_l9r_go_relaxed.owl transforming growth factor beta receptor complex|TGF-beta receptor complex https://github.com/geneontology/go-ontology/issues/12676 This term was made obsolete because it does not represent a physiological complex. True cellular_component owl:Class GO:0051390 biolink:NamedThing obsolete inactivation of MAPKKK activity OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase kinase kinase (MAPKKK). tmpzr1t_l9r_go_relaxed.owl inactivation of MAP kinase kinase kinase activity|termination of MAPKKK activity|termination of MAP kinase kinase kinase activity https://github.com/geneontology/go-ontology/issues/21308 This term was obsoleted because it represents a molecular function. GO:0030291|GO:0043409 True biological_process owl:Class GO:0008954 biolink:NamedThing obsolete peptidoglycan synthetase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peptidoglycan synthetase activity This term was made obsolete because it was not defined, is ambiguous, and has been used to annotate gene products with very different activities. GO:0008955|GO:0071972 True molecular_function owl:Class GO:0015005 biolink:NamedThing obsolete azurin OBSOLETE. Brilliant blue copper-containing protein of low molecular weight found in some bacteria; thought to transfer electrons to cytochrome oxidase. This definition includes pseudoazurin. tmpzr1t_l9r_go_relaxed.owl azurin This term was made obsolete because it does not represent a molecular function. GO:0009055 True molecular_function owl:Class GO:0015469 biolink:NamedThing obsolete channel-forming toxin activity OBSOLETE. A toxin that exerts its effects by forming a channel in a membrane that allows the unregulated passage of substances into and out of the cell. tmpzr1t_l9r_go_relaxed.owl channel-forming toxin activity This term was made obsolete because it represents a class of gene products. GO:0035915|GO:0046930|GO:0015267|GO:0090729 True molecular_function owl:Class RO:0002342 biolink:NamedThing results in transport across tmpzr1t_l9r_go_relaxed.owl RO:0002342 external results_in_transport_across GO:0039561 biolink:NamedThing obsolete suppression by virus of host IRF9 activity by positive regulation of IRF9 localization to nucleus OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host IRF9 (interferon regulatory factor-9) by promoting the nuclear accumulation of IRF9. For example, the reovirus mu2 protein promotes nuclear accumulation of host IRF9 by an as yet unconfirmed-mechanism. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host IRF9 activity by nuclear localization of IRF9|suppression of interferon signaling by nuclear accumulation of IRF9 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-09T04:53:44Z True biological_process owl:Class GO:0003806 biolink:NamedThing obsolete coagulation factor XIIa activity OBSOLETE. Catalysis of the selective cleavage of Arg-Ile bonds in factor VII to form factor VIIa and factor XI to form factor XIa. tmpzr1t_l9r_go_relaxed.owl hageman factor activity|hageman factor fragment HFf|hageman factor (activated)|activated beta blood-coagulation factor XII|blood-coagulation factor XIIf|prekallikrein activator|coagulation factor XIIa activity|blood-coagulation factor XIIabeta|blood coagulation factor XII activity|kallikreinogen activator|prealbumin activator|hageman factor beta-fragment GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0098649 biolink:NamedThing obsolete response to peptidyl-dipeptidase A inhibitor OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidyl-dipeptidase A inhibitor stimulus. tmpzr1t_l9r_go_relaxed.owl response to ACE inhibitor|response to angiotensin-converting enzyme inhibitor https://github.com/geneontology/go-ontology/issues/19725 This term was obsoleted because it does not represent a physiological process. True biological_process owl:Class GO:0030636 biolink:NamedThing obsolete acetate derivative biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of derivatives of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate derivative anabolism|acetate derivative biosynthetic process|acetate derivative biosynthesis|acetate derivative formation|acetate derivative synthesis This term was made obsolete because it is an unnecessary grouping term and has been replaced by terms to describe metabolism of specific compounds. GO:1900620 True biological_process owl:Class GO:0075344 biolink:NamedThing obsolete modulation by symbiont of host protein levels OBSOLETE. The alteration by an organism of protein levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. True biological_process owl:Class GO:0052365 biolink:NamedThing obsolete catabolism by host of symbiont xylan OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0106184 biolink:NamedThing obsolete translocation activity acting on other compounds OBSOLETE. Catalysis of the translocation of other compounds not included in EC:7.1 through EC:7.5 . tmpzr1t_l9r_go_relaxed.owl EC:7.6.-.- This term was made obsolete because the name and scope ( other compounds not included in EC:7.1 through EC:7.5 ) is not good ontological practice. hjd 2019-04-05T15:56:19Z True molecular_function owl:Class GO:0005490 biolink:NamedThing obsolete cytochrome P450 OBSOLETE. A cytochrome b that has a sulfur atom ligated to the iron of the prosthetic group (heme-thiolate); enzymes:typically monooxygenases acting on lipophilic substrates. tmpzr1t_l9r_go_relaxed.owl cytochrome P450 This term was made obsolete because its definition was changed and because it represents a gene product. True molecular_function owl:Class GO:0009587 biolink:NamedThing obsolete phototrophin mediated phototransduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl phototrophin mediated phototransduction GO:0007602 True biological_process owl:Class GO:0006158 biolink:NamedThing obsolete deoxyadenosine deaminase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl deoxyadenosine deaminase reaction GO:0046936 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0100018 biolink:NamedThing obsolete regulation of glucose import by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates glucose import. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:1990872 biolink:NamedThing obsolete negative regulation of sterol import by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that decreases the frequency, rate or extent of sterol import, by down regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of sterol influx by stimulation of transcription from RNA polymerase II promoter|negative regulation of sterol uptake by activation of transcription from RNA polymerase II promoter|negative regulation of sterol import by up-regulation of transcription from RNA polymerase II promoter|negative regulation of sterol influx by negative regulation of transcription from RNA polymerase II promoter|negative regulation of sterol import by negative regulation of transcription from Pol II promoter|negative regulation of sterol uptake by upregulation of transcription from RNA polymerase II promoter|negative regulation of sterol influx by upregulation of transcription from RNA polymerase II promoter|negative regulation of sterol uptake by negative regulation of transcription from RNA polymerase II promoter|negative regulation of sterol uptake by up-regulation of transcription from RNA polymerase II promoter|negative regulation of sterol influx by activation of transcription from RNA polymerase II promoter|negative regulation of sterol uptake by up regulation of transcription from RNA polymerase II promoter|negative regulation of sterol import by up regulation of transcription from RNA polymerase II promoter|negative regulation of sterol influx by up-regulation of transcription from RNA polymerase II promoter|negative regulation of sterol import by stimulation of transcription from RNA polymerase II promoter|negative regulation of sterol influx by up regulation of transcription from RNA polymerase II promoter|negative regulation of sterol import by activation of transcription from RNA polymerase II promoter|negative regulation of sterol import by upregulation of transcription from RNA polymerase II promoter|negative regulation of sterol uptake by stimulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. rb 2015-09-28T21:22:23Z True biological_process owl:Class GO:0052132 biolink:NamedThing obsolete positive aerotaxis on or near host OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0007337 biolink:NamedThing obsolete unilateral process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl unilateral process This term was made obsolete because it gives no indication of what it refers to. True biological_process owl:Class GO:0046200 biolink:NamedThing obsolete m-cresol biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of m-cresol (3-hydroxytoluene), the meta-isoform of cresol. tmpzr1t_l9r_go_relaxed.owl m-cresol formation|m-cresol anabolism|m-cresol biosynthesis|m-cresol biosynthetic process|m-cresol synthesis GO:0018925 This term was made obsolete because m-cresol is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0035940 biolink:NamedThing obsolete negative regulation of peptidase activity in other organism OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein, in a second organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of protease activity in other organism|down-regulation of protease activity in other organism|inhibition of protease activity in other organism|downregulation of peptidase activity in other organism|down regulation of peptidase activity in other organism https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. bf 2011-07-22T02:59:40Z True biological_process owl:Class GO:0106196 biolink:NamedThing obsolete translocase activity acting on inorganic anions linked to the hydrolysis of a nucleoside triphosphate OBSOLETE. Catalysis of the translocation of inorganic anions linked to the hydrolysis of a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.3.2.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:15:35Z True molecular_function owl:Class GO:0009632 biolink:NamedThing obsolete freezing tolerance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl freezing tolerance This term was made obsolete because 'tolerance' implies a phenotype rather than a biological process. GO:0009409 True biological_process owl:Class GO:1902335 biolink:NamedThing obsolete positive chemotaxis involved in neuron migration OBSOLETE. Any positive chemotaxis that is involved in neuron migration. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis involved in neuronal migration|chemoattraction involved in neuron chemotaxis|chemoattraction involved in neuron guidance|positive chemotaxis involved in neuron migration|positive chemotaxis involved in neuron chemotaxis|positive chemotaxis involved in neuron guidance|chemoattraction involved in neuron migration|chemoattraction involved in neuronal migration This term was obsoleted at the TermGenie Gatekeeper stage. rl 2013-07-29T12:52:01Z True biological_process owl:Class GO:0016227 biolink:NamedThing obsolete tRNA sulfurtransferase activity OBSOLETE. Catalysis of the reaction: L-cysteine + 'activated' tRNA = L-serine + tRNA containing a thionucleotide. tmpzr1t_l9r_go_relaxed.owl tRNA sulfurtransferase activity|L-cysteine:tRNA sulfurtransferase activity|tRNA sulphurtransferase activity|transfer RNA thiolase activity|transfer ribonucleate sulfurtransferase activity|ribonucleate sulfurtransferase activity|transfer RNA sulfurtransferase activity|RNA sulfurtransferase activity GO:0034227 This term was made obsolete because tRNA thionucleotide formation is a multistep process; there is no single reaction in which cysteine reacts with an activated tRNA directly GO:0016783 True molecular_function owl:Class GO:0036207 biolink:NamedThing obsolete positive regulation of histone gene expression OBSOLETE. Any process that increases the frequency, rate or extent of expression of a histone-encoding gene. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. tmpzr1t_l9r_go_relaxed.owl up-regulation of histone gene expression|upregulation of histone gene expression|activation of histone gene expression|positive regulation of expression of histone-encoding gene This term was obsoleted because it referes to a specific gene product. The gene product should be captured as an annotation extension using 'has input'. GO:0045944 bf 2012-04-25T09:27:42Z True biological_process owl:Class GO:0052178 biolink:NamedThing obsolete metabolism by symbiont of host cell wall chitin OBSOLETE. The chemical reactions and pathways performed by an organism involving chitin in the cell wall of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0023043 biolink:NamedThing obsolete signaling via lipid mediator OBSOLETE. The process in which information is sent from one location to another, within a living organism or between living organisms, via a lipid mediator. tmpzr1t_l9r_go_relaxed.owl signaling via lipid mediator|signalling via lipid mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0023052|GO:0014065 2010-02-16T09:30:50Z True biological_process owl:Class GO:0032362 biolink:NamedThing obsolete FAD catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of FAD, the oxidized form of flavin-adenine dinucleotide. tmpzr1t_l9r_go_relaxed.owl FAD degradation|FAD catabolism|FAD breakdown|oxidized flavin adenine dinucleotide catabolic process The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. True biological_process owl:Class GO:0052125 biolink:NamedThing obsolete energy taxis on or near host OBSOLETE. The directed movement of a motile cell or organism on or near its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0007150 biolink:NamedThing obsolete growth pattern OBSOLETE. A process whereby cells develop a specific morphology under a specific set of circumstances. tmpzr1t_l9r_go_relaxed.owl growth pattern This term was made obsolete because the original meaning of the term is unclear, the current definition is incorrect, and it does not describe a biological process. GO:0040007 True biological_process owl:Class GO:0009004 biolink:NamedThing obsolete signal peptidase I activity OBSOLETE. Catalysis of the cleavage of N-terminal leader sequences from secreted and periplasmic proteins precursor. tmpzr1t_l9r_go_relaxed.owl propeptidase activity|signal proteinase activity|Escherichia coli leader peptidase|SPase I activity|prokaryotic leader peptidase|pilin leader peptidase|prokaryotic signal proteinase|eukaryotic signal peptidase|eukaryotic signal proteinase|signal peptidase I activity|leader peptide hydrolase activity|signal peptide hydrolase activity|HOSP|SPC|prokaryotic signal peptidase|leader peptidase I|bacterial leader peptidase 1|phage-procoat-leader peptidase activity|bacterial leader peptidase I activity|signalase activity|leader proteinase activity|leader peptidase activity|PuIO prepilin peptidase GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1903994 biolink:NamedThing obsolete positive regulation of protein stabilization OBSOLETE. Any process that activates or increases the frequency, rate or extent of protein stabilization. tmpzr1t_l9r_go_relaxed.owl upregulation of protein sequestering|upregulation of positive regulation of protein stability|up-regulation of positive regulation of protein stability|positive regulation of protein stabilization activity|up-regulation of protein sequestering|up regulation of positive regulation of protein stability|up-regulation of protein stabilization activity|up regulation of protein sequestering|upregulation of protein stabilization|positive regulation of protein sequestering|positive regulation of lysosomal protein stabilization|up-regulation of protein stabilization|activation of lysosomal protein stabilization|positive regulation of protein stabilization|activation of protein stabilization activity|activation of positive regulation of protein stability|up regulation of protein stabilization|positive regulation of positive regulation of protein stability|upregulation of lysosomal protein stabilization|activation of protein stabilization|up regulation of lysosomal protein stabilization|activation of protein sequestering|up-regulation of lysosomal protein stabilization|up regulation of protein stabilization activity|upregulation of protein stabilization activity This term was made obsolete because it was created in error. GO:0050821 pga 2015-03-05T13:33:00Z True biological_process owl:Class GO:0007244 biolink:NamedThing obsolete MAPKKK cascade (mating sensu Saccharomyces) OBSOLETE. MAPKKK cascade involved in transduction of mating pheromone signal, as described in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade (mating sensu Saccharomyces) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:1902352 biolink:NamedThing obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. bf 2013-08-14T09:35:43Z True biological_process owl:Class GO:0008572 biolink:NamedThing obsolete nucleoplasmin ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP required for the ATP-dependent assembly of nucleosome cores, in decondensation of sperm chromatin and in other histone-involving processes. tmpzr1t_l9r_go_relaxed.owl nucleoplasmin ATPase activity GO:0016887 This term was made obsolete because it represents a class of gene products, and its definition incorporates process information. GO:0006333 True molecular_function owl:Class GO:2001273 biolink:NamedThing obsolete regulation of glucose import in response to insulin stimulus OBSOLETE. Any process that modulates the frequency, rate or extent of glucose import in response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of cellular glucose import in response to insulin stimulus https://github.com/geneontology/go-ontology/issues/15961 This term was obsoleted because it represents a GO-CAM model. vk 2011-12-13T12:29:31Z True biological_process owl:Class GO:0017141 biolink:NamedThing obsolete antibiotic susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl antibiotic susceptibility/resistance GO:0046677 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0052471 biolink:NamedThing obsolete modulation by organism of systemic acquired resistance in symbiont OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of systemic acquired resistance in the symbiont organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of systemic acquired resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0075117 biolink:NamedThing obsolete suppression by symbiont of host transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by symbiont of host transmembrane receptor-mediated cAMP signal transduction|downregulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction|negative regulation by symbiont of host transmembrane receptor-mediated cAMP signaling The reason for obsoletion is that there is no evidence that this process exists. True biological_process owl:Class GO:0051827 biolink:NamedThing obsolete growth or development on or near surface of other organism during symbiotic interaction OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development on or near surface of other organism during symbiotic interaction This term was made obsolete because it contained a conjunction (or). GO:0044111 True biological_process owl:Class GO:0010679 biolink:NamedThing obsolete cinnamic acid biosynthetic process involved in salicylic acid metabolism OBSOLETE. The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid, which is then utilized in the metabolism of salicylic acid. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. True biological_process owl:Class GO:0030819 biolink:NamedThing obsolete positive regulation of cAMP biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl positive regulation of adenosine 3',5'-cyclophosphate biosynthesis|positive regulation of 3',5'-cAMP biosynthesis|activation of cAMP biosynthetic process|positive regulation of 3',5' cAMP biosynthesis|positive regulation of cAMP anabolism|positive regulation of 3',5' cAMP biosynthetic process|positive regulation of cAMP biosynthesis|positive regulation of adenosine 3',5'-cyclophosphate biosynthetic process|up-regulation of cAMP biosynthetic process|positive regulation of cAMP synthesis|positive regulation of 3',5'-cAMP biosynthetic process|stimulation of cAMP biosynthetic process|positive regulation of cyclic AMP biosynthetic process|positive regulation of cyclic AMP biosynthesis|positive regulation of cAMP formation|upregulation of cAMP biosynthetic process|up regulation of cAMP biosynthetic process https://github.com/geneontology/go-ontology/issues/14718 True biological_process owl:Class GO:0017093 biolink:NamedThing obsolete sterol regulatory element-binding protein protease activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds within a sterol regulatory element binding protein (SREBP). SREBPs are transcription factors that bind sterol regulatory elements (SREs), DNA motifs found in the promoters of target genes. tmpzr1t_l9r_go_relaxed.owl SREBP protease activity|sterol regulatory element-binding protein protease activity GO:0008233 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0016583 biolink:NamedThing obsolete nucleosome modeling OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nucleosome modeling This term was made obsolete because it has been replaced by more specific terms. GO:0006334 True biological_process owl:Class GO:0075180 biolink:NamedThing obsolete regulation of transcription in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its transcription as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22014 This term was obsoleted because it represents a GO-CAM model. GO:0006355 True biological_process owl:Class GO:0004237 biolink:NamedThing obsolete membrane dipeptidase activity OBSOLETE. Catalysis of the hydrolysis of dipeptides. tmpzr1t_l9r_go_relaxed.owl dehydropeptidase I activity|nonspecific dipeptidase activity|dipeptidyl hydrolase activity|membrane dipeptidase activity|DPH I activity|dipeptide hydrolase|aminodipeptidase activity|MDP|glycosyl-phosphatidylinositol-anchored renal dipeptidase activity|renal dipeptidase activity|microsomal dipeptidase activity|dehydropeptidase I (DPH I) EC:3.4.13.19|MetaCyc:3.4.13.19-RXN This term was made obsolete because it represents a gene product. GO:0016805|GO:0008235 True molecular_function owl:Class GO:0001564 biolink:NamedThing obsolete resistance to pathogenic protozoa OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl resistance to pathogenic protozoa GO:0001562 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0009474 biolink:NamedThing obsolete nonaheme cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nonaheme cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:1990940 biolink:NamedThing obsolete microtubule sliding involved in mitotic spindle elongation OBSOLETE. The movement of one microtubule along another microtubule involved in mitotic spindle elongation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. vw 2016-04-04T11:06:41Z True biological_process owl:Class GO:0005192 biolink:NamedThing obsolete urinary protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl urinary protein This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:0051854 biolink:NamedThing obsolete induction in symbiont of tumor, nodule, or growth containing transformed cells OBSOLETE. The process by which an organism causes the formation in its symbiont organism of an abnormal growth whose cells have been transformed and continue to exist in the absence of the first organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction in symbiont of tumor, nodule, or growth containing transformed cells This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0052135 biolink:NamedThing obsolete negative aerotaxis in host OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative aerotaxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052383 biolink:NamedThing obsolete induction by organism of symbiont innate immunity OBSOLETE. The activation by an organism of the innate immune response of the symbiont organism; the innate immune response is the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of symbiont innate immunity|activation by organism of symbiont innate immunity|induction by organism of symbiont innate immune response|activation by organism of symbiont innate immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005563 biolink:NamedThing obsolete transfer RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transfer RNA GO:0030533 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1903484 biolink:NamedThing obsolete negative regulation of maintenance of mitotic actomyosin contractile ring localization OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic actomyosin contractile ring localization. tmpzr1t_l9r_go_relaxed.owl inhibition of maintenance of mitotic actomyosin contractile ring localization|down regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|down-regulation of maintenance of mitotic actomyosin contractile ring localization|down regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|negative regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|down regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|downregulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|downregulation of cytokinetic ring anchoring involved in mitotic cell cycle|downregulation of maintenance of mitotic actomyosin contractile ring localization|negative regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|downregulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|down-regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle|negative regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|inhibition of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|down regulation of maintenance of mitotic actomyosin contractile ring localization|down regulation of cytokinetic ring anchoring involved in mitotic cell cycle|down-regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|inhibition of cytokinetic ring anchoring involved in mitotic cell cycle|down-regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|down-regulation of cytokinetic ring anchoring involved in mitotic cell cycle|downregulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|inhibition of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|negative regulation of cytokinetic ring anchoring involved in mitotic cell cycle|inhibition of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle The reason for obsoletion is that this term represents a GO-CAM model. vw 2014-09-23T16:12:28Z True biological_process owl:Class exports biolink:NamedThing exports tmpzr1t_l9r_go_relaxed.owl RO:0002345 external exports GO:0003079 biolink:NamedThing obsolete positive regulation of natriuresis OBSOLETE. Any process that activates or increases the frequency, rate or extent of natriuresis. tmpzr1t_l9r_go_relaxed.owl positive regulation of natriuresis This term was made obsolete because its definition was inaccurate. GO:0035815 True biological_process owl:Class GO:0008581 biolink:NamedThing obsolete ubiquitin-specific protease 5 activity OBSOLETE. Catalysis of the hydrolysis of the Gly76-Lys48 isopeptide bond of polyubiquitin. tmpzr1t_l9r_go_relaxed.owl ubiquitin isopeptidase T activity|ubiquitin-specific protease 5 activity GO:0004843 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:2001219 biolink:NamedThing obsolete positive regulation of S/G2 transition of mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of S/G2 transition of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of S/G2 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. dph 2011-11-16T09:14:50Z True biological_process owl:Class GO:0003817 biolink:NamedThing obsolete complement factor D activity OBSOLETE. Catalysis of the cleavage of component factor B (Arg-Lys) when in complex with C3b or with cobra venom factor (CVF). tmpzr1t_l9r_go_relaxed.owl adipsin|properdin factor D esterase activity|complement factor D activity|C3 proactivator convertase activity|C3 convertase activator activity|factor D (complement)|factor D GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1901226 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter involved in heart development OBSOLETE. Any process that activates or increases the frequency, rate or extent of regulation of transcription from RNA polymerase II promoter involved in heart development. tmpzr1t_l9r_go_relaxed.owl upregulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|activation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|upregulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|up-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|up-regulation of regulation of transcription from Pol II promoter involved in cardiac development|up regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|activation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|activation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|up regulation of regulation of global transcription from Pol II promoter involved in cardiac development|upregulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|up-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|upregulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|up-regulation of regulation of global transcription from Pol II promoter involved in cardiac development|positive regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|activation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|up-regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|upregulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|up regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|positive regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|up regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|upregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|positive regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|positive regulation of transcription from RNA polymerase II promoter involved in heart development|upregulation of regulation of transcription from RNA polymerase II promoter involved in heart development|up-regulation of global transcription regulation from Pol II promoter involved in heart development|upregulation of regulation of global transcription from Pol II promoter involved in heart development|positive regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|up-regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|activation of regulation of global transcription from Pol II promoter involved in cardiac development|activation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|activation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|up regulation of global transcription regulation from Pol II promoter involved in cardiac development|up regulation of regulation of global transcription from Pol II promoter involved in heart development|up-regulation of regulation of transcription from Pol II promoter involved in heart development|positive regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|up-regulation of global transcription regulation from Pol II promoter involved in cardiac development|activation of global transcription regulation from Pol II promoter involved in dorsal vessel development|upregulation of regulation of global transcription from Pol II promoter involved in cardiac development|up-regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|activation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|upregulation of global transcription regulation from Pol II promoter involved in heart development|up regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|positive regulation of regulation of transcription from Pol II promoter involved in heart development|positive regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|up regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|positive regulation of regulation of global transcription from Pol II promoter involved in heart development|activation of regulation of transcription from Pol II promoter involved in heart development|activation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|upregulation of regulation of transcription from Pol II promoter involved in cardiac development|upregulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|activation of regulation of transcription from Pol II promoter involved in dorsal vessel development|up regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|up regulation of global transcription regulation from Pol II promoter involved in heart development|upregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|up regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|positive regulation of regulation of global transcription from Pol II promoter involved in cardiac development|upregulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|up regulation of regulation of transcription from Pol II promoter involved in heart development|up-regulation of regulation of transcription from RNA polymerase II promoter involved in heart development|up regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|activation of global transcription regulation from Pol II promoter involved in heart development|activation of regulation of transcription from RNA polymerase II promoter involved in heart development|up-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|up-regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|activation of global transcription regulation from Pol II promoter involved in cardiac development|upregulation of regulation of transcription from Pol II promoter involved in heart development|positive regulation of global transcription regulation from Pol II promoter involved in heart development|up regulation of regulation of transcription from RNA polymerase II promoter involved in heart development|activation of regulation of global transcription from Pol II promoter involved in heart development|up-regulation of regulation of global transcription from Pol II promoter involved in heart development|up-regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|positive regulation of global transcription regulation from Pol II promoter involved in cardiac development|positive regulation of regulation of transcription from Pol II promoter involved in cardiac development|up-regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|upregulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|up-regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|activation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|up regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|activation of regulation of transcription from Pol II promoter involved in cardiac development|positive regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|up regulation of regulation of transcription from Pol II promoter involved in cardiac development|up regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|positive regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|up-regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|positive regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|up regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|upregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|upregulation of global transcription regulation from Pol II promoter involved in cardiac development|positive regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development This term was obsoleted at the TermGenie Gatekeeper stage. GO:0045944|GO:0007507 rl 2012-08-07T07:04:32Z True biological_process owl:Class GO:1900456 biolink:NamedThing obsolete regulation of invasive growth in response to glucose limitation by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of invasive growth in response to glucose limitation by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of colony morphology by regulation of transcription from RNA polymerase II promoter|regulation of invasive growth in response to glucose limitation by regulation of transcription from RNA polymerase II promoter This term was obsoleted at the TermGenie Gatekeeper stage. dgf 2012-05-01T05:42:03Z True biological_process owl:Class GO:0046022 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter during mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter, mitotic|up-regulation of transcription from RNA polymerase II promoter during mitosis|stimulation of transcription from RNA polymerase II promoter during mitosis|mitotic activation of transcription from Pol II promoter|positive regulation of transcription from Pol II promoter during mitosis|up regulation of transcription from RNA polymerase II promoter during mitosis|activation of transcription from RNA polymerase II promoter during mitosis|upregulation of transcription from RNA polymerase II promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0045944 True biological_process owl:Class GO:0005015 biolink:NamedThing obsolete neurotrophin TRKB receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKB receptor activity This term was made obsolete because it represents a gene product. GO:0043121|GO:0004714|GO:0048403|GO:0007165 True molecular_function owl:Class GO:2000582 biolink:NamedThing obsolete positive regulation of microtubule motor activity, plus-end-directed OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATP-dependent microtubule motor activity, plus-end-directed. tmpzr1t_l9r_go_relaxed.owl positive regulation of ATP-dependent microtubule motor activity, plus-end-directed|positive regulation of plus-end-directed kinesin ATPase activity|positive regulation of kinesin activity|positive regulation of kinesin ATP phosphohydrolase (plus-end-directed)|positive regulation of plus-end-directed microtubule motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140660 bf 2011-04-05T08:39:52Z True biological_process owl:Class GO:0006512 biolink:NamedThing obsolete ubiquitin cycle OBSOLETE. The cyclical process by which one or more ubiquitin groups are added to (ubiquitination) and removed from (deubiquitination) a protein. tmpzr1t_l9r_go_relaxed.owl ubiquitin cycle This term was made obsolete because it implies that every protein that is ubiquitinated is also subsequently deubiquinitated, which is not true. Also, the process ontology does not include analogous terms for other small modifiers. True biological_process owl:Class GO:0003782 biolink:NamedThing obsolete F-actin capping activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl F-actin capping activity GO:0051016 This term was made obsolete because it describes a biological process. True molecular_function owl:Class GO:0052011 biolink:NamedThing obsolete catabolism by symbiont of host cell wall pectin OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host cell wall pectin https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0018927 biolink:NamedThing obsolete methionine and threonine metabolic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl methionine and threonine metabolic process This term was made obsolete because its use of 'and' was causing violations to the true-path rule. GO:0006555|GO:0006566 True biological_process owl:Class GO:0061306 biolink:NamedThing obsolete DNA strand renaturation involved in double-strand break repair OBSOLETE. The identification and annealing of complementary base pairs in single-strand DNA that contributes to double-strand break repair. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14671 This term was obsoleted because it represents a molecular function. GO:0036310|GO:0006302 dph 2010-09-21T09:36:47Z True biological_process owl:Class GO:0085012 biolink:NamedThing obsolete interaction with host via protein secreted by Tat complex OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Tat complex. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host via protein secreted by Tat secretion system This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:29:37Z True biological_process owl:Class GO:0009622 biolink:NamedThing obsolete resistance to pathogenic fungi OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl resistance to pathogenic fungi GO:0009620 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:2001218 biolink:NamedThing obsolete negative regulation of S/G2 transition of mitotic cell cycle OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of S/G2 transition of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl negative regulation of S/G2 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. dph 2011-11-16T09:14:47Z True biological_process owl:Class GO:0034225 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of zinc ions. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter in response to zinc ion limitation|regulation of transcription from RNA polymerase II promoter in response to zinc deficiency This term was obsoleted because it represents a GO-CAM model. GO:0034224|GO:0006357 True biological_process owl:Class GO:0001129 biolink:NamedThing obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly OBSOLETE. Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), to facilitate the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. tmpzr1t_l9r_go_relaxed.owl TATA-binding protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly|TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. krc 2011-01-20T02:53:35Z True molecular_function owl:Class GO:0052398 biolink:NamedThing obsolete induction by organism of symbiont phytoalexin production OBSOLETE. The activation by an organism of the production of phytoalexins as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of symbiont phytoalexin production|activation by organism of symbiont phytoalexin production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009315 biolink:NamedThing obsolete drug resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl drug resistance GO:0009410 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0075340 biolink:NamedThing obsolete negative regulation of growth or development of symbiont during interaction with host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of growth or development of symbiont during interaction with host This term was made obsolete because it contained a conjunction (or). GO:0044147 True biological_process owl:Class GO:1990967 biolink:NamedThing obsolete multi-organism toxin transport OBSOLETE. The directed movement of a toxin into, out of or within a cell, or between cells where two or more organisms of the same or different species are involved. tmpzr1t_l9r_go_relaxed.owl typhoid toxin transport This term was obsoleted because there is no evidence that this process exists. bf 2016-06-21T09:01:39Z True biological_process owl:Class GO:0009984 biolink:NamedThing obsolete adenylate forming enzyme activity OBSOLETE. Catalysis of the reaction: substrate + ATP = substrate-AMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl adenylate forming enzyme activity This term was made obsolete because it does not refer to a specific reaction but rather to a process which results in the formation of AMP. GO:0046033 True molecular_function owl:Class GO:0005809 biolink:NamedThing obsolete Golgi-vacuole transport vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Golgi-vacuole transport vesicle This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology suggested that a new term was required. GO:0030133 True cellular_component owl:Class GO:0000989 biolink:NamedThing obsolete transcription factor activity, transcription factor binding OBSOLETE. Binding to a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl transcription factor binding transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0140110|GO:0008134 krc 2010-08-10T04:57:43Z True molecular_function owl:Class GO:0052232 biolink:NamedThing obsolete positive aerotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive aerotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0042336 biolink:NamedThing obsolete cuticle development involved in protein-based cuticle molting cycle OBSOLETE. Synthesis and deposition of a protein-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. Examples of this process are found in invertebrate species. tmpzr1t_l9r_go_relaxed.owl cuticle biosynthetic process during molting|cuticle synthesis during molting|cuticle development involved in protein-based cuticle molting cycle|cuticle formation during molting|cuticle anabolism during molting This term was made obsolete because 'protein-based cuticle' is an unnecessary grouping term. GO:0042338|GO:0042337 True biological_process owl:Class GO:0075211 biolink:NamedThing obsolete regulation of transmembrane receptor-mediated cAMP signaling in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its transmembrane receptor-mediated cAMP signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont transmembrane receptor-mediated cAMP signal transduction in response to host|regulation of transmembrane receptor-mediated cAMP signalling in response to host|regulation of transmembrane receptor-mediated cAMP signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0052134 biolink:NamedThing obsolete negative aerotaxis on or near host OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0075095 biolink:NamedThing obsolete negative regulation by host of symbiont signal transduction mediated by G-protein beta subunit OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont signal transduction mediated by G-protein beta subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0051185 biolink:NamedThing obsolete coenzyme transmembrane transporter activity OBSOLETE. Enables the transfer of a coenzyme from one side of a membrane to the other. A coenzyme is any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl coenzyme transporter activity 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a coenzyme. True molecular_function owl:Class GO:0015435 biolink:NamedThing obsolete ABC-type efflux permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ABC-type efflux permease activity This term was made obsolete because ABC transporters are a protein family rather than a functional grouping. GO:0043190|GO:0042626 True molecular_function owl:Class GO:1903160 biolink:NamedThing obsolete nickel cation transmembrane transporter activity involved in nickel cation import into cell OBSOLETE. Any nickel cation transmembrane transporter activity that is involved in nickel cation import into cell. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity involved in nickel cation import into cell|nickel cation transmembrane transporter activity involved in nickel cation import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:33Z True molecular_function owl:Class GO:0030815 biolink:NamedThing obsolete negative regulation of cAMP metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl negative regulation of 3',5' cAMP metabolic process|downregulation of cAMP metabolic process|down-regulation of cAMP metabolic process|negative regulation of 3',5' cAMP metabolism|negative regulation of adenosine 3',5'-cyclophosphate metabolic process|down regulation of cAMP metabolic process|negative regulation of cyclic AMP metabolic process|negative regulation of 3',5'-cAMP metabolism|negative regulation of adenosine 3',5'-cyclophosphate metabolism|negative regulation of 3',5'-cAMP metabolic process|negative regulation of cyclic AMP metabolism|negative regulation of cAMP metabolism|inhibition of cAMP metabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0042643 biolink:NamedThing obsolete actomyosin, actin portion OBSOLETE. The actin part of any complex of actin, myosin, and accessory proteins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19570 This term was obsoleted because it corresponds to a gene product, actin. True cellular_component owl:Class GO:0104005 biolink:NamedThing obsolete hijacked molecular function OBSOLETE. A function that was not selected for in the evolution of an organism, but arises from co-option by another organism, e.g. a human protein used as a virus receptor. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16741 This term was obsoleted because it was an unnecessary grouping class. dos 2017-08-04T02:12:09Z True molecular_function owl:Class GO:0006387 biolink:NamedThing obsolete snRNA capping OBSOLETE. The sequence of enzymatic reactions resulting in the addition of a cap to the 5' end of a nascent snRNA transcript. tmpzr1t_l9r_go_relaxed.owl snRNA capping This term was made obsolete because it has been replaced with a more specific term to describe cap hypermethylation. All RNA polymerase II transcripts receive a 7-methyl-G cap. Then for (at least) small nuclear RNAs (snRNAs) and small nucleolar RNAs (snoRNAs), the 7-methyl-G cap is hypermethylated to become a 2,2,7-trimethylguanosine (TMG) cap. GO:0036261 True biological_process owl:Class GO:0044141 biolink:NamedThing obsolete negative regulation of development of symbiont on or near host surface OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is this term represents both a process and a component. jl 2009-08-04T04:32:18Z True biological_process owl:Class GO:0035958 biolink:NamedThing obsolete regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of the glyoxylate cycle by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of glyoxylate bypass by regulation of transcription from RNA polymerase II promoter|regulation of glyoxylate bypass by regulation of transcription from Pol II promoter|regulation of glyoxylate cycle by regulation of transcription from Pol II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0003789 biolink:NamedThing obsolete actin filament severing activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin filament severing activity GO:0051014 This term was made obsolete because it describes a biological process. True molecular_function owl:Class GO:0051436 biolink:NamedThing obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin ligase activity that contributes to the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl anaphase-promoting complex inhibition during mitotic cell cycle|negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle|mitotic anaphase promoting complex inhibition|mitotic APC inhibition|mitotic SCF complex inhibitor|inhibition of ubiquitin ligase activity during mitotic cell cycle|mitotic anaphase promoting complex inhibitor|mitotic anaphase-promoting complex inhibitor|mitotic anaphase-promoting complex inhibition|APC inhibition during mitotic cell cycle|mitotic APC inhibitor|anaphase promoting complex inhibition during mitotic cell cycle|down regulation of ubiquitin ligase activity during mitotic cell cycle|mitotic ubiquitin ligase inhibitor|down-regulation of ubiquitin ligase activity during mitotic cell cycle|downregulation of ubiquitin ligase activity during mitotic cell cycle|negative regulation of ubiquitin ligase activity during mitotic cell cycle https://github.com/geneontology/go-ontology/issues/15196 This term was obsoleted because it should be captured as a GO-CAM model. True biological_process owl:Class GO:2000190 biolink:NamedThing obsolete negative regulation of regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor. tmpzr1t_l9r_go_relaxed.owl negative regulation of regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor This term was made obsolete because it makes no sense and was added in error. GO:0030522|GO:0004879|GO:0000122|GO:0030374 rl 2010-10-18T10:02:57Z True biological_process owl:Class GO:1900465 biolink:NamedThing obsolete negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cellular arginine catabolic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of arginine degradation by negative regulation of transcription from RNA polymerase II promoter|negative regulation of arginine catabolism by negative regulation of transcription from RNA polymerase II promoter|negative regulation of arginine breakdown by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T07:38:01Z True biological_process owl:Class GO:0004283 biolink:NamedThing obsolete plasmin activity OBSOLETE. Catalysis of the preferential cleavage of Lys-Xaa > Arg-Xaa; higher selectivity than trypsin. Converts fibrin into soluble products. tmpzr1t_l9r_go_relaxed.owl fibrinase activity|serum tryptase activity|plasmin activity|fibrinolysin activity|actase activity|thrombolysin GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1902496 biolink:NamedThing obsolete protein binding involved in negative regulation of telomere maintenance via telomerase OBSOLETE. Any protein binding that is involved in negative regulation of telomere maintenance via telomerase. tmpzr1t_l9r_go_relaxed.owl protein binding involved in down regulation of telomere maintenance via telomerase activity|protein binding involved in inhibition of telomere maintenance via telomerase|protein binding involved in down-regulation of telomere maintenance via telomerase activity|protein binding involved in downregulation of telomere maintenance via telomerase activity The reason for obsoletion is that this should be captured as a GO-CAM model. dph 2013-11-13T16:22:49Z True molecular_function owl:Class GO:0001603 biolink:NamedThing obsolete vasopressin-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vasopressin-like receptor activity True molecular_function owl:Class GO:1904740 biolink:NamedThing obsolete positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter OBSOLETE. A transcription from RNA polymerase II promoter that results in positive regulation of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by RNA polymerase II transcription factor activity|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by gene-specific transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by specific transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from Pol II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by general transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. tb 2015-10-15T21:30:51Z True biological_process owl:Class GO:0035980 biolink:NamedThing obsolete invasive growth in response to nitrogen limitation OBSOLETE. The growth of colonies in filamentous chains of cells as a result of a reduced availability of nitrogen. tmpzr1t_l9r_go_relaxed.owl invasive growth in response to nitrogen limitation This term was made obsolete because the GO term 'pseudohyphal growth ; GO:0007124' describes growth under nitrogen-limiting conditions. GO:0007124 bf 2011-08-22T01:20:39Z True biological_process owl:Class GO:0071512 biolink:NamedThing obsolete MAPK import into nucleus involved in conjugation with cellular fusion OBSOLETE. The directed movement of a MAP kinase to the nucleus that occurs in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl MAPK import into nucleus involved in mating response|nuclear translocation of MAPK involved in conjugation with cellular fusion|nuclear translocation of MAPK involved in mating response|conjugation with cellular fusion, nuclear translocation of MAPK|conjugation with cellular fusion, MAPK import into nucleus The reason for obsoletion is that this term represents a GO-CAM model. GO:0006606 mah 2010-01-05T02:11:08Z True biological_process owl:Class GO:0030087 biolink:NamedThing obsolete PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex GO:0009655 This term was made obsolete because the 'complex' it refers to contains only one gene product. True cellular_component owl:Class GO:0051188 biolink:NamedThing obsolete cofactor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein. tmpzr1t_l9r_go_relaxed.owl cofactor anabolism|cofactor synthesis|cofactor formation|cofactor biosynthesis 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0019816 biolink:NamedThing obsolete B cell receptor accessory molecule complex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl B cell receptor accessory molecule complex This term was made obsolete because it represents a molecule and not a location or complex. GO:0019815 True cellular_component owl:Class GO:0044034 biolink:NamedThing obsolete multi-organism biosynthetic process OBSOLETE. A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - which involves more than one organism. tmpzr1t_l9r_go_relaxed.owl multi-organismal biosynthetic process|multi-organism biosynthesis|multi-organismal biosynthesis https://github.com/geneontology/go-ontology/issues/18787 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0035421 biolink:NamedThing obsolete activation of MAPKK activity involved in innate immune response OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18000 bf 2010-03-29T01:26:44Z True biological_process owl:Class GO:0003773 biolink:NamedThing obsolete heat shock protein activity OBSOLETE. Any of a group of specific proteins that are synthesized by both prokaryotic and eukaryotic cells after they have been exposed to a temperature that is higher than normal. Other stresses, e.g. free radical damage, have a similar effect. Many members of the hsp family are not induced but are present in all cells. They are characterized by their role as molecular chaperones. tmpzr1t_l9r_go_relaxed.owl heat shock protein activity This term was made obsolete because it represents a class of gene products rather than a molecular function. GO:0006986|GO:0042026 True molecular_function owl:Class GO:0039572 biolink:NamedThing obsolete suppression by virus of host STAT2 activity by negative regulation of STAT2 tyrosine phosphorylation OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT2 (signal transducer and activator of transcription-2) activity by stopping, preventing, or reducing the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT2 protein. For example, the measles virus V protein inhibits tyrosine phosphorylation of STAT2, thereby preventing STAT2 activation. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of tyrosine phosphorylation of STAT2 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:53:50Z True biological_process owl:Class GO:0050800 biolink:NamedThing obsolete hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement OBSOLETE. Catalysis of the hydrolysis of GTP to directly drive the cellular or subcellular transport of a substance. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement This term was made obsolete because it represents both process and function information. GO:0006810|GO:0003924 True molecular_function owl:Class GO:0015472 biolink:NamedThing obsolete fimbrium-specific chaperone activity OBSOLETE. Assists in the correct assembly of fimbria, extracellular organelles that are used to attach a bacterial cell to a surface, but is not a component of the fimbrium when performing its normal biological function. tmpzr1t_l9r_go_relaxed.owl fimbrium-specific chaperone activity This term was made obsolete because it refers to a class of proteins and a biological process rather than a molecular function. GO:0009297|GO:0051082|GO:0044183|GO:0030674 True molecular_function owl:Class GO:1903163 biolink:NamedThing obsolete sodium ion transmembrane transporter activity involved in sodium ion import into cell OBSOLETE. Any sodium ion transmembrane transporter activity that is involved in sodium ion import into cell. tmpzr1t_l9r_go_relaxed.owl sodium ion transmembrane transporter activity involved in sodium ion import into cell|sodium transporter activity involved in sodium ion import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:49Z True molecular_function owl:Class GO:0005941 biolink:NamedThing obsolete unlocalized protein complex OBSOLETE. Used as a holding place for cellular components whose precise localization is, as yet, unknown, or has not been determined by GO (the latter is the major reason for nodes to have this parent); this term should not be used for annotation of gene products. tmpzr1t_l9r_go_relaxed.owl unlocalized protein complex This term was made obsolete because it was originally intended only as a temporary parent for protein complex terms for which no more specific parents had been found. This term no longer has any children: All protein complex terms are is_a 'protein complex ; GO:0043234' and nearly all have been placed under parents to yield more specific paths traversing a part_of relationship. In other words, the term has been superseded by other terms and relationships in the cellular component ontology, and is no longer needed. True cellular_component owl:Class GO:0090620 biolink:NamedThing obsolete APC-Cdc20 complex OBSOLETE. An anaphase promoting complex bound to the fizzy family APC activator Cdc20/Slp1 which regulates the metaphase anaphase transition by activating the APC/C to target the anaphase inhibitor securin and promotes sister chromatid separation. tmpzr1t_l9r_go_relaxed.owl mitotic anaphase promotic complex|APC-fizzy complex|APC-Slp1 complex This term was made obsolete because it is too fine-grained for GO. Consider Complex Portal EBI-1252490, Anaphase-Promoting Complex variant 2 as an alternate term. GO:0005680 tb 2014-12-17T17:01:38Z True cellular_component owl:Class GO:1901313 biolink:NamedThing obsolete positive regulation of gene expression involved in extracellular matrix organization OBSOLETE. Any process that activates or increases the frequency, rate or extent of gene expression involved in extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl activation of gene expression involved in extracellular matrix organization|up regulation of gene expression involved in extracellular matrix organization|up-regulation of extracellular matrix protein production|upregulation of gene expression involved in extracellular matrix organization|activation of expression of extracellular matrix proteins|up regulation of expression of extracellular matrix proteins|up regulation of extracellular matrix protein production|upregulation of expression of extracellular matrix proteins|up-regulation of expression of extracellular matrix proteins|upregulation of extracellular matrix protein production|positive regulation of expression of extracellular matrix proteins|activation of extracellular matrix protein production|up-regulation of gene expression involved in extracellular matrix organization|positive regulation of extracellular matrix protein production This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization. GO:0010628 vk 2012-08-22T09:18:42Z True biological_process owl:Class GO:0052402 biolink:NamedThing obsolete induction by organism of symbiont resistance gene-dependent defense response OBSOLETE. The activation by an organism of the resistance gene-dependent defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of defense response in symbiont by specific elicitors|activation by organism of symbiont gene-for-gene resistance|activation by organism of defense response in symbiont by specific elicitors|induction by organism of symbiont resistance gene-dependent defense response|induction by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont|activation by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont|activation by organism of symbiont resistance gene-dependent defense response|induction by organism of symbiont gene-for-gene resistance This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009377 biolink:NamedThing obsolete HslUV protease activity OBSOLETE. Catalysis of the ATP-dependent hydrolysis of peptide bonds in substrates including E. coli SulA and misfolded proteins. tmpzr1t_l9r_go_relaxed.owl HslUV protease activity GO:0008233 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1900013 biolink:NamedThing obsolete cellular response to potassium ion involved in chemotaxis to cAMP OBSOLETE. The directed movement of a motile cell in response to the presence of 3',5'-cAMP that results in a change in state or activity (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to K+ ion of chemotaxis to 3',5'-cAMP|cellular response to K+ ion of chemotaxis to cyclic AMP|cellular response to potassium of chemotaxis to 3',5' cAMP|cellular response to potassium ion of chemotaxis to cAMP|cellular response to potassium ion of chemotaxis to 3',5' cAMP|cellular response to potassium of chemotaxis to adenosine 3',5'-cyclophosphate|cellular response to potassium of chemotaxis to 3',5'-cAMP|cellular response to potassium ion involved in chemotaxis to cAMP|cellular response to potassium ion of chemotaxis to cyclic AMP|cellular response to K+ ion of chemotaxis to 3',5' cAMP|cellular response to potassium ion of chemotaxis to 3',5'-cAMP|cellular response to K+ ion of chemotaxis to cAMP|cellular response to potassium ion of chemotaxis to adenosine 3',5'-cyclophosphate|cellular response to potassium of chemotaxis to cyclic AMP|cellular response to K+ ion of chemotaxis to adenosine 3',5'-cyclophosphate|cellular response to potassium of chemotaxis to cAMP This term was made obsolete because it was added by mistake. pr 2012-01-11T07:59:57Z True biological_process owl:Class GO:0004207 biolink:NamedThing obsolete effector caspase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl effector caspase activity GO:0004197 This term was made obsolete because it includes biological process information. GO:0006915 True molecular_function owl:Class GO:1901636 biolink:NamedThing obsolete negative regulation of maintenance of presynaptic active zone structure OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of presynaptic active zone structure. tmpzr1t_l9r_go_relaxed.owl inhibition of maintenance of presynaptic active zone structure|down-regulation of maintenance of presynaptic active zone structure|negative regulation of maintenance of presynaptic active zone structure|down regulation of maintenance of presynaptic active zone structure|downregulation of maintenance of presynaptic active zone structure This term was obsoleted at the TermGenie Gatekeeper stage. ans 2012-11-15T14:17:07Z True biological_process owl:Class GO:1900014 biolink:NamedThing obsolete cellular response to calcium ion involved in chemotaxis to cAMP OBSOLETE. The directed movement of a motile cell in response to the presence of 3',5'-cAMP that results in a change in state or activity (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to calcium ion involved in chemotaxis to cAMP|cellular response to Ca2+ ion of chemotaxis to 3',5' cAMP|cellular response to Ca2+ ion of chemotaxis to 3',5'-cAMP|cellular response to Ca2+ ion of chemotaxis to cyclic AMP|cellular response to Ca2+ ion of chemotaxis to adenosine 3',5'-cyclophosphate|cellular response to calcium ion of chemotaxis to 3',5' cAMP|cellular response to calcium ion of chemotaxis to cAMP|cellular response to Ca2+ ion of chemotaxis to cAMP|cellular response to calcium ion of chemotaxis to adenosine 3',5'-cyclophosphate|cellular response to calcium ion of chemotaxis to cyclic AMP|cellular response to calcium ion of chemotaxis to 3',5'-cAMP pr 2012-01-11T08:06:58Z True biological_process owl:Class GO:0015465 biolink:NamedThing obsolete lysin activity OBSOLETE. An agent that can lyse cells. tmpzr1t_l9r_go_relaxed.owl lysin activity This term was made obsolete because it represents a class of gene products. GO:0019835 True molecular_function owl:Class GO:0061397 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to copper ion OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter in response to an copper ion stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0045944|GO:0071280 dph 2012-01-10T09:14:51Z True biological_process owl:Class GO:0001871 biolink:NamedThing obsolete pattern binding OBSOLETE. Binding to a repeating or polymeric structure, such as a polysaccharide or peptidoglycan. tmpzr1t_l9r_go_relaxed.owl pattern recognition activity This term was obsoleted because it was an unnecessary grouping term. True molecular_function owl:Class GO:0021882 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0021877|GO:0006357 True biological_process owl:Class GO:0004287 biolink:NamedThing obsolete prolyl oligopeptidase activity OBSOLETE. Catalysis of the hydrolysis of Pro-Xaa > Ala-Xaa in oligopeptides. tmpzr1t_l9r_go_relaxed.owl post-proline endopeptidase activity|prolyl oligopeptidase activity|proline endopeptidase activity|prolyl endopeptidase activity|endoprolylpeptidase activity|post-proline cleaving enzyme activity|proline-specific endopeptidase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005481 biolink:NamedThing obsolete vesicle fusion OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vesicle fusion This term was made obsolete because it represents a biological process and not a molecular function. GO:0016192|GO:0019817|GO:0006906|GO:0007086|GO:0016189 True molecular_function owl:Class GO:0033667 biolink:NamedThing obsolete negative regulation of growth or development of symbiont in host OBSOLETE. Any process by which the symbiont stops, prevents or reduces its increase in size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation of growth or development of organism within host|down-regulation of growth or development of organism within host|negative regulation of growth or development of symbiont in host|negative regulation of growth or development of symbiont within host|negative regulation of invasive growth|inhibition of growth of development of organism within host|down regulation of growth or development of organism within host This term was made obsolete because it contained a conjunction (or). GO:0044131 True biological_process owl:Class GO:0015023 biolink:NamedThing obsolete syndecan OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl syndecan This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0070020 biolink:NamedThing obsolete transforming growth factor beta1-type II receptor complex OBSOLETE. A protein complex that consists of a dimeric transforming growth factor beta (TGF-beta) type II receptor bound to a TGF-beta1 dimer. tmpzr1t_l9r_go_relaxed.owl TGF-beta1-type II receptor complex|TGF-beta receptor II-TGF-beta1 complex https://github.com/geneontology/go-ontology/issues/12676 This term was made obsolete because it does not represent a physiological complex. True cellular_component owl:Class GO:0100005 biolink:NamedThing obsolete positive regulation of ethanol catabolic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates ethanol catabolic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0046237 biolink:NamedThing obsolete phenanthrene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of phenanthrene, a tricyclic aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl phenanthrene biosynthesis|phenanthrene formation|phenanthrene anabolism|phenanthrene synthesis|phenanthrene biosynthetic process GO:0018955 This term was made obsolete because phenanthrene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0035286 biolink:NamedThing obsolete leg segmentation OBSOLETE. Division of a leg into a series of semi-repetitive parts or segments. Most arthropod appendages are visibly segmented; the Drosophila leg for example has nine segments, each separated from the next by a flexible joint. tmpzr1t_l9r_go_relaxed.owl leg segmentation This term was made obsolete because leg is a mechano-functional grouping, and having both 'leg morphogenesis' and 'hindlimb morphogenesis' terms causes errors in querying. GO:0035285|GO:0036011 True biological_process owl:Class GO:0031940 biolink:NamedThing obsolete positive regulation of chromatin silencing at telomere OBSOLETE. Any process that activates or increases the frequency, rate or extent of chromatin silencing at telomeres. tmpzr1t_l9r_go_relaxed.owl positive regulation of heterochromatic silencing at telomere|up regulation of chromatin silencing at telomere|activation of chromatin silencing at telomere|upregulation of chromatin silencing at telomere|up-regulation of chromatin silencing at telomere|stimulation of chromatin silencing at telomere https://github.com/geneontology/go-ontology/issues/22027 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. True biological_process owl:Class GO:1990750 biolink:NamedThing obsolete axon shaft OBSOLETE. Main portion of an axon, excluding terminal, spines, or dendrites. tmpzr1t_l9r_go_relaxed.owl axonal shaft This term was made obsolete because it was added in error. GO:0044304 sl 2015-05-21T17:46:18Z True cellular_component owl:Class GO:0030319 biolink:NamedThing obsolete cellular di-, tri-valent inorganic anion homeostasis OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent inorganic anions at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular di-, tri-valent inorganic anion homeostasis This term was made obsolete because it has been split. GO:0072501|GO:0072502 True biological_process owl:Class GO:0072694 biolink:NamedThing obsolete cell cycle arrest in response to caffeine OBSOLETE. The cell cycle regulatory process in which the cell cycle is halted during one of the normal phases (G1, S, G2, M) as a result of a caffeine stimulus. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it does not represent a real process. mah 2011-12-05T01:29:00Z True biological_process owl:Class GO:0017078 biolink:NamedThing obsolete Hsc70 protein regulator activity OBSOLETE. Binds to and modulates the activity of the molecular chaperone Hsc70. tmpzr1t_l9r_go_relaxed.owl Hsc70 interacting protein|Hsc70 protein regulator activity GO:0031072 This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp70 protein activity'. GO:0051082|GO:0006457|GO:0051787 True molecular_function owl:Class GO:0000739 biolink:NamedThing obsolete DNA strand annealing activity OBSOLETE. Facilitates the base-pairing of complementary single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl DNA strand annealing activity This term was made obsolete because it describes a process and not an activity. GO:0036292|GO:0036310 True molecular_function owl:Class GO:0015982 biolink:NamedThing obsolete antiport OBSOLETE. The process of coupled solute translocation in which two solutes equilibrate across an osmotic barrier, the translocation of solute being coupled to the translocation of the other in the opposite direction. tmpzr1t_l9r_go_relaxed.owl antiport GO:0015297 This term was made obsolete because it represents a molecular function rather than a biological process. True biological_process owl:Class GO:1902887 biolink:NamedThing obsolete positive regulation of proteasome-activating ATPase activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of proteasome-activating ATPase activity. tmpzr1t_l9r_go_relaxed.owl upregulation of proteasome-activating ATPase activity|up regulation of proteasome channel gating activity|positive regulation of ATPase involved in positive regulation of proteasomal protein catabolic process|up-regulation of proteasome channel opening activity|up-regulation of proteasomal ATPase activity|activation of proteasome channel gating activity|activation of proteasome-activating ATPase activity|upregulation of proteasome channel gating activity|up regulation of proteasomal ATPase activity|positive regulation of proteasomal ATPase activity|positive regulation of proteasome channel opening activity|up regulation of ATPase involved in positive regulation of proteasomal protein catabolic process|upregulation of ATPase involved in positive regulation of proteasomal protein catabolic process|up-regulation of ATPase involved in positive regulation of proteasomal protein catabolic process|activation of proteasome channel opening activity|up-regulation of proteasome-activating ATPase activity|up regulation of proteasome channel opening activity|up regulation of proteasome-activating ATPase activity|activation of proteasomal ATPase activity|upregulation of proteasome channel opening activity|upregulation of proteasomal ATPase activity|positive regulation of proteasome channel gating activity|up-regulation of proteasome channel gating activity|activation of ATPase involved in positive regulation of proteasomal protein catabolic process https://github.com/geneontology/go-ontology/issues/20879 This term was obsoleted because it represents a molecular function. di 2014-04-04T17:35:36Z True biological_process owl:Class GO:1905926 biolink:NamedThing obsolete positive regulation of invadopodium assembly OBSOLETE. Any process that activates or increases the frequency, rate or extent of invadopodium assembly. tmpzr1t_l9r_go_relaxed.owl activation of invadopodium formation|positive regulation of invadopodium formation|up-regulation of invadopodium formation|up regulation of invadopodium assembly|activation of invadopodium assembly|upregulation of invadopodium assembly|up regulation of invadopodium formation|upregulation of invadopodium formation|up-regulation of invadopodium assembly This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:38:48Z True biological_process owl:Class GO:0022867 biolink:NamedThing obsolete transmembrane 2-electron transfer carrier OBSOLETE. Enables transfer of two electrons across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane two-electron transfer carrier The reason for obsoletion is that the term does not represent a molecular function but rather a process. True molecular_function owl:Class GO:0030807 biolink:NamedThing obsolete positive regulation of cyclic nucleotide catabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways resulting in the breakdown of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl positive regulation of cyclic nucleotide catabolism|up regulation of cyclic nucleotide catabolic process|positive regulation of cyclic nucleotide degradation|positive regulation of cyclic nucleotide breakdown|up-regulation of cyclic nucleotide catabolic process|stimulation of cyclic nucleotide catabolic process|upregulation of cyclic nucleotide catabolic process|activation of cyclic nucleotide catabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0016658 biolink:NamedThing obsolete oxidoreductase activity, acting on NADH or NADPH, flavin as acceptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, flavin as acceptor This term was made obsolete because it was a grouping term taken from EC that no longer has any functions associated with it. GO:0008752|GO:0042602 True molecular_function owl:Class GO:0023068 biolink:NamedThing obsolete signal transmission via phloem OBSOLETE. The process in which a signal is conveyed via the phloem. tmpzr1t_l9r_go_relaxed.owl signal transmission via phloem This term was made obsolete because the meaning of the term is ambiguous. GO:0023052|GO:0010233 2010-02-16T09:30:50Z True biological_process owl:Class GO:0017029 biolink:NamedThing obsolete lysosomal protein stabilization OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lysosomal protein stabilization This term was made obsolete because it contains both component and function information. GO:0005764|GO:0050821 True molecular_function owl:Class GO:0097756 biolink:NamedThing obsolete negative regulation of blood vessel diameter OBSOLETE. Any process that decreases the diameter of blood vessels. tmpzr1t_l9r_go_relaxed.owl negative regulation of vasodilation This term was obsoleted because it corresponded to an existing term, GO:0042310 ; vasocontriction. pr 2017-02-08T15:36:16Z True biological_process owl:Class GO:0071343 biolink:NamedThing obsolete negative regulation of establishment of actomyosin contractile ring localization OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the process in which a contractile ring is assembled in a specific location. tmpzr1t_l9r_go_relaxed.owl negative regulation of establishment of contractile ring localization involved in cell cycle cytokinesis|negative regulation of establishment of contractile ring localization involved in cytokinesis during cell cycle|negative regulation of establishment of contractile ring localisation involved in cell cycle cytokinesis|negative regulation of establishment of actomyosin contractile ring localization This term was made obsolete because it does not describe a wild-type or normal process. mah 2009-12-11T01:33:14Z True biological_process owl:Class GO:0061404 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to increased salt OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0071472|GO:0045944 dph 2012-01-10T03:20:40Z True biological_process owl:Class GO:0007468 biolink:NamedThing obsolete regulation of rhodopsin gene expression OBSOLETE. Any process that modulates the frequency, rate or extent of rhodopsin gene expression. This includes transcriptional, translational, or posttranslational regulation. tmpzr1t_l9r_go_relaxed.owl regulation of rhodopsin gene activity This term was obsoleted because it referes to a specific gene product. The gene product should be captured as an annotation extension using 'has input'. GO:0006357 True biological_process owl:Class GO:0004898 biolink:NamedThing obsolete gp130 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl gp130 This term was made obsolete because it represents a gene product. GO:0004915|GO:0004897|GO:0004921 True molecular_function owl:Class GO:0045783 biolink:NamedThing obsolete negative regulation of calcium in ER OBSOLETE. Any process that reduces the concentration of calcium in the ER. tmpzr1t_l9r_go_relaxed.owl negative regulation of calcium in ER This term was made obsolete because the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport'). GO:0006874|GO:0005783 True biological_process owl:Class GO:0005660 biolink:NamedThing obsolete delta-DNA polymerase cofactor complex OBSOLETE. A complex of proteins that interacts with delta-DNA polymerase, promoting elongation. In humans it is a heteropentamer of subunits of 140/145, 40, 38, 37 and 36.5 kDa, which form a complex with the proliferating cell nuclear antigen (PCNA) in the presence of ATP. tmpzr1t_l9r_go_relaxed.owl delta DNA polymerase cofactor complex|delta-DNA polymerase cofactor complex This term was made obsolete because it refers to two distinct complexes, PCNA and Replication factor C (RFC), the latter of which is already represented as a separate, unrelated GO term (DNA replication factor C complex ; GO:0005663). In addition, the phrase 'delta-DNA polymerase cofactor' to represent both PCNA and RFC is not used in current literature. GO:0005663|GO:0043626 True cellular_component owl:Class GO:0075091 biolink:NamedThing obsolete positive regulation by host of symbiont signal transduction mediated by G-protein alpha subunit OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction mediated by G-protein alpha subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0039575 biolink:NamedThing obsolete suppression by virus of host TYK2 activity by negative regulation of TYK2 tyrosine phosphorylation OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host TYK2 (tyrosine kinase 2) activity by stopping, preventing or reducing phosphorylation and thereby activation of TYK2. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host TYK2 phosphorylation|inhibition by virus of host TYK2 activation The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf True biological_process owl:Class GO:0010504 biolink:NamedThing obsolete regulation of cell cycle arrest in response to nitrogen starvation OBSOLETE. Any process that modulates the frequency, rate or extent of cell cycle arrest in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed. True biological_process owl:Class GO:0044134 biolink:NamedThing obsolete development of symbiont on or near host phyllosphere OBSOLETE. The progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is this term represents both a process and a component. jl 2009-08-04T04:10:58Z True biological_process owl:Class GO:0035419 biolink:NamedThing obsolete activation of MAPK activity involved in innate immune response OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18000 This term was obsoleted because it should be represented as a GO-CAM model. bf 2010-03-29T01:25:24Z True biological_process owl:Class GO:0004232 biolink:NamedThing obsolete interstitial collagenase activity OBSOLETE. Catalysis of the preferential cleavage of one bond in native collagen. Cleavage of the triple helix of collagen at about three-quarters of the length of the molecule from the N-terminus, at Gly775-Ile776 in the alpha-1(I) chain. Cleaves synthetic substrates and alpha-macroglobulins at bonds where P1' is a hydrophobic residue. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase 1|interstitial collagenase activity|vertebrate collagenase activity|MMP-1 GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004230 biolink:NamedThing obsolete glutamyl aminopeptidase activity OBSOLETE. Catalysis of the release of a N-terminal glutamate (and to a lesser extent aspartate) from a peptide. tmpzr1t_l9r_go_relaxed.owl L-aspartate aminopeptidase activity|aspartate aminopeptidase activity|glutamyl peptidase activity|membrane aminopeptidase II|Ca2+-activated glutamate aminopeptidase activity|aminopeptidase A|angiotensinase A2|antigen BP-1/6C3 of mouse B lymphocytes|angiotensinase A|glutamyl aminopeptidase activity MetaCyc:3.4.11.7-RXN|EC:3.4.11.7 This term was made obsolete because it represents a gene product. GO:0004177|GO:0008235 True molecular_function owl:Class GO:0044460 biolink:NamedThing obsolete flagellum part OBSOLETE. Any constituent part of a flagellum, a long whiplike or feathery structure borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium. tmpzr1t_l9r_go_relaxed.owl flagellum component|flagellum part This term was made obsolete because it was an unnecessary grouping term. Eukaryotic flagella were deemed to be equivalent to cilia and merged, so the only remaining child to this term was 'bacterial-type flagellum part ; GO:0044461'. True cellular_component owl:Class GO:0003969 biolink:NamedThing obsolete RNA editase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl RNA editase activity This term was made obsolete because it describes a biological process. True molecular_function owl:Class GO:1901488 biolink:NamedThing obsolete positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process OBSOLETE. Negative regulation of transcription factor catabolism that results in positive regulation of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of SREBP-mediated signalling pathway by negative regulation of transcription factor catabolic process|positive regulation of SREBP signaling pathway by negative regulation of SREBP degradation|positive regulation of SREBP signaling pathway by inhibition of SREBP degradation|positive regulation of SREBP-mediated signaling pathway by negative regulation of transcription factor catabolic process|positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolism The reason for obsoletion is that this term should be represented by a GO-CAM model. bf 2012-10-09T08:23:43Z True biological_process owl:Class GO:0016970 biolink:NamedThing obsolete hemocyanin OBSOLETE. A blue, copper-containing oxygen carrier present in many molluscs and arthropods. tmpzr1t_l9r_go_relaxed.owl hemocyanin GO:0005344 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008567 biolink:NamedThing obsolete dynein ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP by dynein that provides the energy for the movement of organelles (endosomes, lysosomes, mitochondria) along microtubules to the centrosome. tmpzr1t_l9r_go_relaxed.owl dynein ATPase activity This term was made obsolete because it represents a class of gene products, and its definition incorporates process information. GO:0007018|GO:0003777 True molecular_function owl:Class GO:1903148 biolink:NamedThing obsolete uracil transmembrane transporter activity involved in uracil import into cell OBSOLETE. Any uracil transmembrane transporter activity that is involved in uracil import into cell. tmpzr1t_l9r_go_relaxed.owl uracil/uridine permease activity involved in uracil import into cell|uracil transmembrane transporter activity involved in uracil import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:24Z True molecular_function owl:Class GO:0090690 biolink:NamedThing obsolete heteroreceptor complex OBSOLETE. A receptor complex that consists of two or more different receptor complexes that individually undergo combination with a hormone, neurotransmitter, drug or intracellular messenger. The formation of the higher level complex initiates a change in cell function. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted as it was created in error. tb 2016-08-24T09:47:15Z True cellular_component owl:Class GO:1905928 biolink:NamedThing obsolete negative regulation of invadopodium disassembly OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of invadopodium disassembly. tmpzr1t_l9r_go_relaxed.owl down regulation of invadopodium disassembly|inhibition of invadopodium disassembly|down-regulation of invadopodium disassembly|downregulation of invadopodium disassembly This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:39:05Z True biological_process owl:Class GO:0008130 biolink:NamedThing obsolete neutrophil collagenase activity OBSOLETE. Catalysis of the cleavage of interstitial collagens in the triple helical domain. Unlike EC:3.4.24.7, this enzyme cleaves type III collagen more slowly than type I. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase 8 activity|neutrophil collagenase activity|MMP-8|PMNL collagenase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990365 biolink:NamedThing obsolete response to phenol OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of phenols. tmpzr1t_l9r_go_relaxed.owl response to phenol This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-04-23T22:20:00Z True biological_process owl:Class GO:0100027 biolink:NamedThing obsolete regulation of cell separation after cytokinesis by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0018179 biolink:NamedThing obsolete peptidyl-cysteine desulfurization OBSOLETE. The desulfurization of peptidyl-L-cysteine to yield L-alanine and elemental sulfur; peptidyl-L-cysteine persulfide is an intermediate. tmpzr1t_l9r_go_relaxed.owl peptidyl-cysteine desulphurization|peptidyl-cysteine desulfurization RESID:AA0269 This term was made obsolete because to does not correspond to a real process. True biological_process owl:Class GO:1900446 biolink:NamedThing obsolete negative regulation of tRNA transcription from RNA polymerase III promoter OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of tRNA transcription from RNA polymerase III promoter. tmpzr1t_l9r_go_relaxed.owl downregulation of tRNA transcription from RNA polymerase III promoter|inhibition of tRNA transcription from Pol III promoter|down regulation of tRNA transcription from RNA polymerase III promoter|down regulation of tRNA transcription from Pol III promoter|downregulation of tRNA transcription from Pol III promoter|inhibition of tRNA transcription from RNA polymerase III promoter|negative regulation of tRNA transcription from Pol III promoter|down-regulation of tRNA transcription from RNA polymerase III promoter|down-regulation of tRNA transcription from Pol III promoter The reason for obsoletion is that there is no specific regulator for negatively regulating tRNA transcription which is separable from general negative regulation of transcription from RNA polymerase III. sart 2012-04-26T05:28:34Z True biological_process owl:Class GO:0051419 biolink:NamedThing obsolete nebulin binding OBSOLETE. Binding to nebulin, a large protein (approximately 800kD) that is anchored at the Z-disc by its C-terminal region and spans the length of the thin filament, ending at the edge of the H-zone. tmpzr1t_l9r_go_relaxed.owl nebulin binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0052226 biolink:NamedThing obsolete biosynthesis of substance in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism in a second organism resulting in the formation of substances, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biosynthesis of substance in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18787 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0006922 biolink:NamedThing obsolete cleavage of lamin involved in execution phase of apoptosis OBSOLETE. The proteolytic degradation of lamins during apoptosis, leading to the irreversible breakdown of the nuclear lamina. tmpzr1t_l9r_go_relaxed.owl cleavage of lamin|cleavage of lamin involved in execution phase of apoptosis This term was obsoleted because it refers to targets of effector proteins (caspases); the 'cleavage' process referred to in the term name is in fact the same molecular function represented by GO:0097200 'cysteine-type endopeptidase activity involved in execution phase of apoptosis'. GO:0097200 True biological_process owl:Class GO:0075093 biolink:NamedThing obsolete modulation by host of symbiont signal transduction mediated by G-protein beta subunit OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont signal transduction mediated by G-protein beta subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1905482 biolink:NamedThing obsolete cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint OBSOLETE. Any cytoplasmic sequestering of protein that is involved in G2 DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. vw 2016-09-22T18:23:55Z True biological_process owl:Class GO:0008498 biolink:NamedThing obsolete phospholipid scrambling OBSOLETE. The trans-bilayer migration of phospholipids accelerated by a phospholipid scramblase upon binding calcium ions. tmpzr1t_l9r_go_relaxed.owl phospholipid scrambling GO:0017121 This term was made obsolete because it represents a biological process and not a molecular function. True molecular_function owl:Class GO:0006609 biolink:NamedThing obsolete mRNA-binding (hnRNP) protein import into nucleus OBSOLETE. The directed movement of a heterogeneous nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl mRNA-binding (hnRNP) protein-nucleus import|mRNA-binding (hnRNP) protein import into cell nucleus|mRNA-binding (hnRNP) protein transport from cytoplasm to nucleus The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 True biological_process owl:Class GO:0052052 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type II secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type II secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0052235 biolink:NamedThing obsolete negative aerotaxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative aerotaxis in other organism during symbiotic interaction|negative aerotaxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0004242 biolink:NamedThing obsolete beta-mitochondrial processing peptidase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl beta-MPP|beta-mitochondrial processing peptidase This term was made obsolete because it represents a gene product. GO:0004222|GO:0005739 True molecular_function owl:Class GO:0052140 biolink:NamedThing obsolete positive chemotaxis in host OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0015832 biolink:NamedThing obsolete holin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl holin This term was made obsolete because it represents a class of gene products. GO:0019835 True biological_process owl:Class GO:0001167 biolink:NamedThing obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding OBSOLETE. Binding to a specific DNA sequence in order to modulate transcription by RNA polymerase I. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. tmpzr1t_l9r_go_relaxed.owl sequence-specific DNA binding RNA polymerase I transcription factor activity https://github.com/geneontology/go-ontology/issues/15787 This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2011-02-03T04:07:46Z True molecular_function owl:Class GO:0100034 biolink:NamedThing obsolete regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates 4,6-pyruvylated galactose residue biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0007122 biolink:NamedThing obsolete loss of asymmetric budding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl loss of asymmetric budding This term was made obsolete because it is a phenotype rather than a biological process. GO:0006033 True biological_process owl:Class GO:0005566 biolink:NamedThing obsolete ribosomal RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ribosomal RNA This term was made obsolete because it represents a gene product. GO:0005840|GO:0003735 True molecular_function owl:Class GO:0015335 biolink:NamedThing obsolete heavy metal ion:hydrogen symporter activity OBSOLETE. Catalysis of the reaction: Me2+(out) + H+(out) = Me2+(in) + H+(in), where Me2+ is Fe2+, Zn2+, Mn2+, Cu2+, Cd2+, Co2+, Ni2+ or Pb2+. tmpzr1t_l9r_go_relaxed.owl heavy metal ion:proton symporter activity|heavy metal ion:hydrogen symporter activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0046873|GO:0015295 True molecular_function owl:Class GO:0033884 biolink:NamedThing obsolete phosphoethanolamine/phosphocholine phosphatase activity OBSOLETE. Catalysis of the reactions: O-phosphoethanolamine + H2O = ethanolamine + phosphate, and phosphocholine + H2O = choline + phosphate. tmpzr1t_l9r_go_relaxed.owl phosphoethanolamine phosphohydrolase activity|phosphoethanolamine/phosphocholine phosphatase activity|3X11A|PHOSPHO1 This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0052731|GO:0052732 True molecular_function owl:Class GO:0004216 biolink:NamedThing obsolete cathepsin K activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Has a broad proteolytic activity. With small-molecule substrates and inhibitors, the major determinant of specificity is P2, which is preferably Leu, Met > Phe, and not Arg. tmpzr1t_l9r_go_relaxed.owl cathepsin O activity|cathepsin O2 activity|cathepsin X activity|cathepsin K activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0060968 biolink:NamedThing obsolete regulation of gene silencing OBSOLETE. Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22202 This term was obsoleted because it was too broadly defined and could not be distinguished from 'GO:0040029 regulation of gene expression, epigenetic'. GO:0040029 dph 2009-10-05T03:23:56Z True biological_process owl:Class GO:0035423 biolink:NamedThing obsolete inactivation of MAPK activity involved in innate immune response OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. bf 2010-03-29T01:28:59Z True biological_process owl:Class GO:0001062 biolink:NamedThing obsolete plastid PEP-A RNA polymerase activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16738 GO:0003899 This term was obsoleted because the activity is the same as its parent. krc 2010-10-19T03:38:49Z True molecular_function owl:Class GO:0023047 biolink:NamedThing obsolete signal initiation by chemical mediator OBSOLETE. The process in which a chemical signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by chemical mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0070887|GO:0038023|GO:0007165 2010-02-16T09:30:50Z True biological_process owl:Class GO:0072321 biolink:NamedThing obsolete chaperone-mediated protein transport OBSOLETE. The directed movement of proteins into, out of or within a cell, or between cells, mediated by chaperone molecules that bind to the transported proteins. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20850 This term was obsoleted because it represents a function within a process. GO:0140597|GO:0015031 mah 2010-10-28T04:23:20Z True biological_process owl:Class RO:0004009 biolink:NamedThing has primary input tmpzr1t_l9r_go_relaxed.owl RO:0004009 external has_primary_input GO:0019792 biolink:NamedThing obsolete APG12 hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl APG12 hydrolase activity This term was made obsolete because it cannot be determined what its intended meaning was, because the term name is not found in the literature. GO:0019783 True molecular_function owl:Class GO:0045884 biolink:NamedThing obsolete regulation of survival gene product expression OBSOLETE. Any process that modulates the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level. tmpzr1t_l9r_go_relaxed.owl regulation of survival gene product expression|regulation of survival gene products|regulation of survival gene product activity This term was made obsolete because the meaning of the term is ambiguous: the same gene product may or may not have a role in apoptosis depending on the cell type, tissue type, condition, etc. True biological_process owl:Class GO:0004323 biolink:NamedThing obsolete multicopper ferroxidase iron transport mediator activity OBSOLETE. Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O. tmpzr1t_l9r_go_relaxed.owl multicopper ferroxidase iron transport mediator activity This term was made obsolete because it represents a multifunctional gene product. GO:0004322|GO:0005381 True molecular_function owl:Class GO:0046590 biolink:NamedThing obsolete embryonic leg morphogenesis OBSOLETE. The process, occurring in the embryo, by which the anatomical structures of the leg are generated and organized. A leg is a limb on which an animal walks and stands. tmpzr1t_l9r_go_relaxed.owl embryonic leg morphogenesis This term was made obsolete because leg is a mechano-functional grouping, and having both 'leg morphogenesis' and 'hindlimb morphogenesis' terms causes errors in querying. GO:0030326|GO:0035116 True biological_process owl:Class GO:0050523 biolink:NamedThing obsolete oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which phosphorus or arsenic acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, NAD or NADP. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0030613 True molecular_function owl:Class GO:0016147 biolink:NamedThing obsolete protein-synthesizing GTPase activity, elongation OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl protein-synthesizing GTPase activity, elongation This term was made obsolete because it contains both process and function information. GO:0003746|GO:0003924|GO:0006412|GO:0006414 True molecular_function owl:Class GO:0048097 biolink:NamedThing obsolete long-term maintenance of gene activation OBSOLETE. Any mechanism, at the level of transcription or post-transcription, maintaining gene activation in the long-term. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22015 This term has been obsoleted because its definition was not clear, and had no references and no annotations. GO:0045815 True biological_process owl:Class GO:0045024 biolink:NamedThing obsolete peptidyl-glutamyl peptide hydrolyzing enzyme activity OBSOLETE. Catalysis of the cleavage of bonds after acidic amino acids and after branched chain amino acids. tmpzr1t_l9r_go_relaxed.owl peptidyl-glutamyl peptide hydrolyzing enzyme activity GO:0008233 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990370 biolink:NamedThing obsolete process resulting in tolerance to aldehyde OBSOLETE. A response that results in a state of tolerance to aldehyde. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a clear process. tt 2014-04-23T22:30:50Z True biological_process owl:Class GO:0016016 biolink:NamedThing obsolete short-wave-sensitive opsin OBSOLETE. An opsin with maximal absorption between 400 and 500 nm. tmpzr1t_l9r_go_relaxed.owl short-wave-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0007603|GO:0016021|GO:0009881|GO:0016918|GO:0046876|GO:0009588 True molecular_function owl:Class GO:0009402 biolink:NamedThing obsolete toxin resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl toxin resistance GO:0009636 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0030825 biolink:NamedThing obsolete positive regulation of cGMP metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving cGMP. tmpzr1t_l9r_go_relaxed.owl positive regulation of cGMP metabolism|up regulation of cGMP metabolic process|up-regulation of cGMP metabolic process|stimulation of cGMP metabolic process|activation of cGMP metabolic process|upregulation of cGMP metabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0039583 biolink:NamedThing obsolete suppression by virus of host PKR activity by positive regulation of PKR catabolic process OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity by promoting the degradation of PKR via the proteosome. For example, the Rift Valley fever virus (RVFV) NSs protein induces the down-regulation of PKR by degradation through proteasomes. tmpzr1t_l9r_go_relaxed.owl promotion by virus of proteosome-dependent PKR degradation|downregulation of PKR by degradation through proteosome The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-05-02T02:49:30Z True biological_process owl:Class GO:0001191 biolink:NamedThing obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription repressor activity|RNA polymerase II transcription factor binding transcription repressor activity|RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0001227|GO:0061629 krc 2011-08-25T02:12:30Z True molecular_function owl:Class GO:0004226 biolink:NamedThing obsolete Gly-X carboxypeptidase activity OBSOLETE. Catalysis of the reaction: peptidyl-Gly-Xaa + H2O = peptidyl-Gly + Xaa. tmpzr1t_l9r_go_relaxed.owl Gly-Xaa carboxypeptidase activity|carboxypeptidase a|glycine carboxypeptidase activity|peptidase alpha|yeast carboxypeptidase activity|Gly-X carboxypeptidase activity|carboxypeptidase S activity GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005698 biolink:NamedThing obsolete centromere OBSOLETE. The region of a eukaryotic chromosome that is attached to the spindle during nuclear division. It is defined genetically as the region of the chromosome that always segregates at the first division of meiosis; the region of the chromosome in which no crossing over occurs. At the start of M phase, each chromosome consists of two sister chromatids with a constriction at a point which forms the centromere. During late prophase two kinetochores assemble on each centromere, one kinetochore on each sister chromatid. tmpzr1t_l9r_go_relaxed.owl centromere This term was made obsolete because it is a genetically defined region and not a specific subcellular localization. GO:0000775 True cellular_component owl:Class GO:0008605 biolink:NamedThing obsolete protein kinase CK2 regulator activity OBSOLETE. Modulation of the activity of the enzyme protein kinase CK2. tmpzr1t_l9r_go_relaxed.owl protein kinase CK2 regulator activity|protein kinase CK2, intrinsic regulator activity|casein kinase II, regulator GO:0019887 This term was made obsolete because it represents a regulator of an obsolete molecular function. True molecular_function owl:Class GO:0001629 biolink:NamedThing obsolete G-protein receptor 45-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPR45-like receptor|G protein receptor 45-like receptor activity|G-protein receptor 45-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0015059 biolink:NamedThing obsolete blue-sensitive opsin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl blue-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0007603|GO:0016021|GO:0009881|GO:0016918|GO:0046876|GO:0009588 True molecular_function owl:Class GO:0045890 biolink:NamedThing obsolete regulation of transcription of homeotic gene (trithorax group) OBSOLETE. Any process that modulates the frequency, rate or extent of transcription of homeotic genes of the trithorax group. tmpzr1t_l9r_go_relaxed.owl regulation of transcription of homeotic gene (trithorax group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0006357 True biological_process owl:Class GO:1901244 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter to protect the cell or organism in response to the presence of a fungus. tmpzr1t_l9r_go_relaxed.owl positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to fungus|stimulation of transcription from RNA polymerase II promoter involved in defence response to fungi|up-regulation of transcription from RNA polymerase II promoter involved in defense response to fungus|up regulation of global transcription from RNA polymerase II promoter involved in defense response to fungi|upregulation of global transcription from RNA polymerase II promoter involved in defence response to fungus|up-regulation of global transcription from RNA polymerase II promoter involved in defense response to fungus|upregulation of transcription from RNA polymerase II promoter involved in defense response to fungus|stimulation of global transcription from RNA polymerase II promoter involved in defense response to fungi|up-regulation of global transcription from RNA polymerase II promoter involved in defence response to fungi|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to fungi|up regulation of global transcription from RNA polymerase II promoter involved in defense response to fungus|up-regulation of global transcription from RNA polymerase II promoter involved in defence response to fungus|positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungi|positive regulation of global transcription from Pol II promoter involved in defence response to fungi|stimulation of transcription from RNA polymerase II promoter involved in defense response to fungi|positive regulation of global transcription from Pol II promoter involved in defence response to fungus|stimulation of global transcription from RNA polymerase II promoter involved in defence response to fungi|up-regulation of global transcription from RNA polymerase II promoter involved in defense response to fungi|activation of global transcription from RNA polymerase II promoter involved in defence response to fungus|up regulation of transcription from RNA polymerase II promoter involved in defence response to fungus|positive regulation of transcription from Pol II promoter involved in defense response to fungus|up-regulation of transcription from RNA polymerase II promoter involved in defence response to fungus|stimulation of transcription from RNA polymerase II promoter involved in defence response to fungus|stimulation of global transcription from RNA polymerase II promoter involved in defense response to fungus|up-regulation of transcription from RNA polymerase II promoter involved in defence response to fungi|positive regulation of transcription from RNA polymerase II promoter involved in defence response to fungus|positive regulation of transcription from Pol II promoter involved in defence response to fungus|upregulation of transcription from RNA polymerase II promoter involved in defence response to fungi|activation of global transcription from RNA polymerase II promoter involved in defence response to fungi|positive regulation of transcription from Pol II promoter involved in defense response to fungi|positive regulation of transcription from RNA polymerase II promoter involved in defence response to fungi|up regulation of transcription from RNA polymerase II promoter involved in defence response to fungi|up regulation of global transcription from RNA polymerase II promoter involved in defence response to fungi|activation of global transcription from RNA polymerase II promoter involved in defense response to fungi|up-regulation of transcription from RNA polymerase II promoter involved in defense response to fungi|activation of transcription from RNA polymerase II promoter involved in defence response to fungus|upregulation of global transcription from RNA polymerase II promoter involved in defense response to fungus|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to fungus|positive regulation of transcription from Pol II promoter involved in defence response to fungi|upregulation of global transcription from RNA polymerase II promoter involved in defence response to fungi|stimulation of global transcription from RNA polymerase II promoter involved in defence response to fungus|activation of transcription from RNA polymerase II promoter involved in defense response to fungi|up regulation of transcription from RNA polymerase II promoter involved in defense response to fungus|positive regulation of global transcription from Pol II promoter involved in defense response to fungus|activation of global transcription from RNA polymerase II promoter involved in defense response to fungus|upregulation of transcription from RNA polymerase II promoter involved in defense response to fungi|stimulation of transcription from RNA polymerase II promoter involved in defense response to fungus|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to fungi|positive regulation of global transcription from Pol II promoter involved in defense response to fungi|upregulation of transcription from RNA polymerase II promoter involved in defence response to fungus|activation of transcription from RNA polymerase II promoter involved in defence response to fungi|up regulation of transcription from RNA polymerase II promoter involved in defense response to fungi|upregulation of global transcription from RNA polymerase II promoter involved in defense response to fungi|up regulation of global transcription from RNA polymerase II promoter involved in defence response to fungus|activation of transcription from RNA polymerase II promoter involved in defense response to fungus This term was obsoleted because it represents a GO-CAM model. GO:0050832|GO:0045944 kmv 2012-08-07T18:40:02Z True biological_process owl:Class GO:0009049 biolink:NamedThing obsolete aspartic-type signal peptidase activity OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor by an aspartic endopeptidase mechanism. tmpzr1t_l9r_go_relaxed.owl aspartic-type signal peptidase activity GO:0004190 This term was made obsolete because 'signal peptide' is difficult to define unambiguously, and because the term refers to gene products. True molecular_function owl:Class GO:0044215 biolink:NamedThing obsolete other organism OBSOLETE. A secondary organism with which the first organism is interacting. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents an organism, which is outside the scope of GO. jl 2009-11-12T01:04:58Z True cellular_component owl:Class GO:0030940 biolink:NamedThing obsolete response to short-day photoperiod OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a photoperiod, an intermittent cycle of light (day) and dark (night) photoperiod regimes, with the dark phase being longer than the light. tmpzr1t_l9r_go_relaxed.owl response to short-day photoperiod This term was made obsolete because it was wrongly defined. GO:0048572 True biological_process owl:Class GO:0000988 biolink:NamedThing obsolete transcription factor activity, protein binding OBSOLETE. Binding to a protein or protein complex, to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl protein binding transcription factor activity|transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0140110|GO:0005515 krc 2010-08-10T04:03:22Z True molecular_function owl:Class GO:0023044 biolink:NamedThing obsolete signaling via chemical mediator OBSOLETE. The process in which information is sent from one location to another, within a living organism or between living organisms, via a chemical mediator. tmpzr1t_l9r_go_relaxed.owl signaling via chemical mediator|signalling via chemical mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class GO:0003805 biolink:NamedThing obsolete coagulation factor XIa activity OBSOLETE. Catalysis of the selective cleavage of Arg-Ala and Arg-Val bonds in factor IX to form factor IXa. tmpzr1t_l9r_go_relaxed.owl activated blood-coagulation factor XI|activated plasma thromboplastin antecedent|blood coagulation factor XI activity|coagulation factor XIa activity|blood-coagulation factor XIa|plasma thromboplastin antecedent activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990978 biolink:NamedThing obsolete response to viscosity OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a viscosity stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-08-17T20:10:36Z True biological_process owl:Class GO:0019016 biolink:NamedThing obsolete non-segmented viral genome OBSOLETE. A viral genome that consists of one continuous nucleic acid molecule. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0031933 biolink:NamedThing obsolete telomeric heterochromatin OBSOLETE. Heterochromatic regions of the chromosome found at the telomeres. tmpzr1t_l9r_go_relaxed.owl telomeric chromatin https://github.com/geneontology/go-ontology/issues/19086 This term was obsoleted because there is no heterochromatin at the telomere and the term had been used inconsistently. True cellular_component owl:Class GO:1905253 biolink:NamedThing obsolete negative regulation of epidermal growth factor receptor signaling pathway involved in heart process OBSOLETE. Any negative regulation of epidermal growth factor receptor signaling pathway that is involved in heart process. tmpzr1t_l9r_go_relaxed.owl downregulation of epidermal growth factor receptor signaling pathway involved in cardiac process|negative regulation of EGFR signaling pathway involved in cardiac process|negative regulation of EGF receptor signaling pathway involved in heart process|down regulation of epidermal growth factor receptor signaling pathway involved in heart process|negative regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|down-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|negative regulation of EGFR signaling pathway involved in heart process|negative regulation of EGF receptor signalling pathway involved in heart process|inhibition of epidermal growth factor receptor signaling pathway involved in cardiac process|down-regulation of epidermal growth factor receptor signaling pathway involved in heart process|down regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|inhibition of epidermal growth factor receptor signaling pathway involved in heart process|downregulation of epidermal growth factor receptor signaling pathway involved in heart process|negative regulation of EGF receptor signalling pathway involved in cardiac process|negative regulation of EGF receptor signaling pathway involved in cardiac process This term was obsoleted at the TermGenie Gatekeeper stage. bc 2016-06-10T09:21:10Z True biological_process owl:Class GO:1990093 biolink:NamedThing obsolete negative regulation of N-methyl-D-aspartate receptor clustering OBSOLETE. The negative regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of NMDA receptor clustering|negative regulation of N-methyl-D-aspartate receptor clustering This term was obsoleted at the TermGenie Gatekeeper stage. sl 2013-05-06T17:39:44Z True biological_process owl:Class GO:0005187 biolink:NamedThing obsolete storage protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl storage protein GO:0045735 This term was made obsolete because it describes a cellular location rather than a function. True molecular_function owl:Class GO:0004210 biolink:NamedThing obsolete caspase-7 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-7 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008044 biolink:NamedThing obsolete adult behavior (sensu Insecta) OBSOLETE. Behavior in a fully developed and mature organism, as seen in insects. tmpzr1t_l9r_go_relaxed.owl adult behavior (sensu Insecta) GO:0030534 This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. True biological_process owl:Class GO:0046266 biolink:NamedThing obsolete triethanolamine biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent. tmpzr1t_l9r_go_relaxed.owl triethanolamine anabolism|triethanolamine biosynthetic process|triethanolamine biosynthesis|triethanolamine synthesis|triethanolamine formation GO:0018981 This term was made obsolete because triethanolamine is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0000208 biolink:NamedThing obsolete MAPK import into nucleus involved in osmosensory signaling pathway OBSOLETE. The directed movement of a MAP kinase to the nucleus during osmolarity sensing. tmpzr1t_l9r_go_relaxed.owl MAPK import into nucleus involved in osmosensory signalling pathway|nuclear translocation of MAPK during osmolarity sensing|MAPK import into nucleus during osmolarity sensing|nuclear translocation of MAPK involved in osmosensory signalling pathway|osmolarity sensing, MAPK import into nucleus|nuclear translocation of MAPK involved in osmosensory signaling pathway|osmolarity sensing, nuclear translocation of MAPK The reason for obsoletion is that this term represents a GO-CAM model. GO:0006606 True biological_process owl:Class GO:0044239 biolink:NamedThing obsolete salivary polysaccharide catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of polysaccharides by salivary amylase. Salivary amylase is released by salivary glands, usually in the mouth. tmpzr1t_l9r_go_relaxed.owl salivary polysaccharide breakdown|salivary polysaccharide catabolism|salivary polysaccharide degradation The reason for obsoletion is that this term represents the location of a process, which should be captured by the relation 'occurs in'. GO:0000272 True biological_process owl:Class GO:1905159 biolink:NamedThing obsolete negative regulation of Factor XII activation OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of Factor XII activation. tmpzr1t_l9r_go_relaxed.owl inhibition of Hageman factor activation|downregulation of Hageman factor activation|inhibition of Factor XII activation|down regulation of Factor XII activation|downregulation of Factor XII activation|down-regulation of Factor XII activation|negative regulation of Hageman factor activation|down-regulation of Hageman factor activation|down regulation of Hageman factor activation This term was accidentally approved after TermGenie review. It should not have been approved. sl 2016-04-19T23:03:34Z True biological_process owl:Class GO:0009076 biolink:NamedThing obsolete histidine family amino acid biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of amino acids of the histidine family. tmpzr1t_l9r_go_relaxed.owl histidine family amino acid biosynthetic process|histidine family amino acid anabolism|histidine family amino acid formation|histidine family amino acid synthesis|histidine family amino acid biosynthesis GO:0000105 This term was made obsolete because it was an unnecessary grouping term, as histidine would be the only member of this family. True biological_process owl:Class GO:1904722 biolink:NamedThing obsolete positive regulation of mRNA endonucleolytic cleavage involved in unfolded protein response OBSOLETE. Any process that activates or increases the frequency, rate or extent of mRNA endonucleolytic cleavage involved in unfolded protein response. tmpzr1t_l9r_go_relaxed.owl activation of mRNA endonucleolytic cleavage involved in unfolded protein response|up regulation of HAC1-type intron splice site recognition and cleavage|positive regulation of HAC1 mRNA cleavage|upregulation of XBP1 mRNA cleavage|up regulation of XBP1 mRNA cleavage|activation of IRE1-mediated XBP-1 mRNA cleavage|up regulation of HAC1 mRNA cleavage|positive regulation of XBP1 mRNA cleavage|up-regulation of XBP1 mRNA cleavage|upregulation of HAC1-type intron splice site recognition and cleavage|upregulation of mRNA endonucleolytic cleavage involved in unfolded protein response|up-regulation of HAC1-type intron splice site recognition and cleavage|upregulation of HAC1 mRNA cleavage|activation of HAC1-type intron splice site recognition and cleavage|up-regulation of IRE1-mediated XBP-1 mRNA cleavage|positive regulation of HAC1-type intron splice site recognition and cleavage|up-regulation of HAC1 mRNA cleavage|up-regulation of mRNA endonucleolytic cleavage involved in unfolded protein response|positive regulation of IRE1-mediated XBP-1 mRNA cleavage|up regulation of mRNA endonucleolytic cleavage involved in unfolded protein response|upregulation of IRE1-mediated XBP-1 mRNA cleavage|activation of HAC1 mRNA cleavage|up regulation of IRE1-mediated XBP-1 mRNA cleavage|activation of XBP1 mRNA cleavage The reason for obsoletion is that this process being regulated (GO:0070055 mRNA endonucleolytic cleavage involved in unfolded protein response) was obsoleted. GO:1903896 bf 2015-10-08T14:53:02Z True biological_process owl:Class OIO:creation_date biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:1902579 biolink:NamedThing obsolete multi-organism localization OBSOLETE. A localization which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism localization https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-18T13:51:13Z True biological_process owl:Class GO:0100033 biolink:NamedThing obsolete regulation of fungal-type cell wall biogenesis by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fungal-type cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0045825 biolink:NamedThing obsolete negative regulation of intermediate filament polymerization and/or depolymerization OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate filament polymerization and/or depolymerization. tmpzr1t_l9r_go_relaxed.owl negative regulation of intermediate filament polymerization and/or depolymerization This term was made obsolete because it has been split. GO:0030840|GO:0030843 True biological_process owl:Class GO:0004437 biolink:NamedThing obsolete inositol or phosphatidylinositol phosphatase activity OBSOLETE. Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl inositol or phosphatidylinositol phosphatase activity|inositol/phosphatidylinositol phosphatase activity This term was made obsolete because it is a grouping term representing two quite different sets of entities, hexose sugars and glycerophospholipids. GO:0034594|GO:0052744|GO:0052745|GO:0034593 True molecular_function owl:Class GO:1903821 biolink:NamedThing obsolete detection of stimulus involved in morphogenesis checkpoint OBSOLETE. Any detection of stimulus that is involved in morphogenesis checkpoint. tmpzr1t_l9r_go_relaxed.owl perception of stimulus involved in septin checkpoint|stimulus sensing involved in septin checkpoint|detection of stimulus involved in septin checkpoint|stimulus detection involved in morphogenesis checkpoint|perception of stimulus involved in morphogenesis checkpoint|stimulus detection involved in septin checkpoint|stimulus sensing involved in morphogenesis checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. jl 2015-01-19T15:03:59Z True biological_process owl:Class GO:1990754 biolink:NamedThing obsolete GABAergic neuronal action potential OBSOLETE. An action potential that occurs in a GABAergic neuron. tmpzr1t_l9r_go_relaxed.owl GABAergic neuronal action potential This term was obsoleted at the TermGenie Gatekeeper stage. pg 2015-05-28T08:58:42Z True biological_process owl:Class GO:0075099 biolink:NamedThing obsolete modulation by host of symbiont protein kinase-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of protein kinase-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0004289 biolink:NamedThing obsolete subtilase activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl subtilase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0015002 biolink:NamedThing obsolete heme-copper terminal oxidase activity OBSOLETE. Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane. tmpzr1t_l9r_go_relaxed.owl haem-copper terminal oxidase activity https://github.com/geneontology/go-ontology/issues/20924 This term was obsoleted because it groups the last enzymes in the electron transport chain, and is not an appropriate grouping term for molecular function. True molecular_function owl:Class GO:0044698 biolink:NamedThing obsolete morphogenesis of symbiont in host cell OBSOLETE. The process in which a symbiont undergoes a change in shape or form, within the host's cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20305 This term was obsoleted because it represents both a process and a location. jl 2012-09-19T14:10:53Z True biological_process owl:Class GO:0005647 biolink:NamedThing obsolete importin, alpha-subunit OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl karyopherin-alpha|importin, alpha-subunit This term was made obsolete because it represents a single gene product and not a complex. GO:0005643|GO:0005737|GO:0017056|GO:0005634 True cellular_component owl:Class GO:1905254 biolink:NamedThing obsolete positive regulation of epidermal growth factor receptor signaling pathway involved in heart process OBSOLETE. Any positive regulation of epidermal growth factor receptor signaling pathway that is involved in heart process. tmpzr1t_l9r_go_relaxed.owl positive regulation of EGFR signaling pathway involved in cardiac process|positive regulation of EGF receptor signaling pathway involved in heart process|positive regulation of EGF receptor signaling pathway involved in cardiac process|stimulation of epidermal growth factor receptor signaling pathway involved in heart process|positive regulation of EGF receptor signalling pathway involved in cardiac process|activation of epidermal growth factor receptor signaling pathway involved in cardiac process|up-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|upregulation of epidermal growth factor receptor signaling pathway involved in cardiac process|up-regulation of epidermal growth factor receptor signaling pathway involved in heart process|up regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|positive regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|activation of epidermal growth factor receptor signaling pathway involved in heart process|upregulation of epidermal growth factor receptor signaling pathway involved in heart process|stimulation of epidermal growth factor receptor signaling pathway involved in cardiac process|positive regulation of EGF receptor signalling pathway involved in heart process|positive regulation of EGFR signaling pathway involved in heart process|up regulation of epidermal growth factor receptor signaling pathway involved in heart process This term was obsoleted at the TermGenie Gatekeeper stage. bc 2016-06-10T09:21:18Z True biological_process owl:Class GO:0023006 biolink:NamedThing obsolete signal initiation by amino acid OBSOLETE. The process in which an amino acid signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by amino acid This term was made obsolete because the meaning of the term is ambiguous. GO:0008066|GO:0071230|GO:0007215 2010-02-16T09:30:50Z True biological_process owl:Class GO:0015525 biolink:NamedThing obsolete carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:proton antiporter activity|carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015549|GO:0015547|GO:0015548 True molecular_function owl:Class GO:0016665 biolink:NamedThing obsolete oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, an iron-sulfur protein, oxygen, NAD or NADP. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016661 True molecular_function owl:Class GO:0047193 biolink:NamedThing obsolete CDP-acylglycerol O-arachidonoyltransferase activity OBSOLETE. Catalysis of the reaction: CDP-acylglycerol + arachidonyl-CoA = CDP-diacylglycerol + CoA. tmpzr1t_l9r_go_relaxed.owl CDP-acylglycerol O-arachidonyltransferase activity|arachidonyl-CoA:CDP-acylglycerol O-arachidonyltransferase activity|CDP-acylglycerol O-arachidonoyltransferase activity|CDPacylglycerol O-arachidonyltransferase activity|arachidonoyl-CoA:CDP-acylglycerol O-arachidonoyltransferase activity MetaCyc:2.3.1.70-RXN This term was made obsolete because the evidence for the existence of this reaction was retracted. Please see PMID:6885763 for more information. True molecular_function owl:Class GO:0018338 biolink:NamedThing obsolete protein amino acid cinnamylation OBSOLETE. The modification of a protein amino acid by cinnamylation. tmpzr1t_l9r_go_relaxed.owl protein amino acid cinnamylation This term was made obsolete because it was an unnecessary grouping term. GO:0018097 True biological_process owl:Class GO:0100040 biolink:NamedThing obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0030657 biolink:NamedThing obsolete regulation of coenzyme and prosthetic group metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl regulation of coenzyme and prosthetic group metabolic process This term was made obsolete because it was replaced by more specific terms. GO:0051199 True biological_process owl:Class GO:0007575 biolink:NamedThing obsolete nucleolar size increase OBSOLETE. The process of nucleolar expansion. tmpzr1t_l9r_go_relaxed.owl nucleolar size increase This term was made obsolete because it does not describe a biological process. GO:0007576|GO:0007571 True biological_process owl:Class GO:0075200 biolink:NamedThing obsolete negative regulation of symbiont haustorium neck formation for entry into host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont haustorium neck formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18779 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1990368 biolink:NamedThing obsolete process resulting in tolerance to hydrolysate OBSOLETE. A response that results in a state of tolerance to hydrolysate (product of hydrolysis). tmpzr1t_l9r_go_relaxed.owl process resulting in tolerance to hydrolysate This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-04-23T22:27:51Z True biological_process owl:Class GO:0004219 biolink:NamedThing obsolete pyroglutamyl-peptidase I activity OBSOLETE. Catalysis of the reaction: pyroglutamyl-peptide + H2O = pyroglutamate + peptide. tmpzr1t_l9r_go_relaxed.owl pyrrolidonecarboxylyl peptidase activity|pyroglutamyl aminopeptidase activity|L-pyroglutamyl peptide hydrolase activity|pyrrolidone-carboxyl peptidase activity|pyroglutamyl-peptidase I activity|5-oxoprolyl-peptidase activity|pyrrolidone carboxyl peptidase activity|pyroglutamidase activity|L-pyrrolidonecarboxylate peptidase activity|pyrrolidonyl peptidase activity|pyroglutamate aminopeptidase activity|PYRase activity|pyrrolidone-carboxylate peptidase activity EC:3.4.19.3|MetaCyc:PYROGLUTAMYL-PEPTIDASE-I-RXN This term was made obsolete because it represents a gene product. GO:0016920|GO:0008234 True molecular_function owl:Class GO:0097033 biolink:NamedThing obsolete mitochondrial respiratory chain complex III biogenesis OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex III (also known as cytochrome bc(1) complex or ubiquinol-cytochrome c reductase), a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together. tmpzr1t_l9r_go_relaxed.owl mitochondrial cytochrome bc(1) complex biogenesis https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. pr 2011-04-05T03:00:31Z True biological_process owl:Class GO:0001723 biolink:NamedThing obsolete type II intermediate filament associated protein OBSOLETE. High molecular weight (100-300 kDa) proteins that associate with intermediate filaments to cross-link them into loose networks. tmpzr1t_l9r_go_relaxed.owl type II intermediate filament associated protein GO:0005882 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0052507 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont jasmonic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|activation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|activation by organism of defense-related symbiont SA-mediated signal transduction pathway|induction by organism of defense-related symbiont SA-mediated signal transduction pathway|upregulation by organism of defense-related symbiont SA-mediated signal transduction pathway|upregulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|induction by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont SA-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005276 biolink:NamedThing obsolete vesicular amino acid:proton antiporter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a vesicle membrane to the other according to the reaction: H+(in) + amino acid(out) = H+(out) + amino acid(in). tmpzr1t_l9r_go_relaxed.owl vesicular hydrogen:amino acid antiporter activity|hydrogen:vesicular amine antiporter activity The reason for obsoletion is that the cellular component does not belong is the MF according to the documentation: http://wiki.geneontology.org/index.php/Transporter_terms_standard_definitions True molecular_function owl:Class GO:0005651 biolink:NamedThing obsolete exportin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl exportin This term was made obsolete because it represents a single gene product and not a complex. GO:0005737|GO:0017056|GO:0005634|GO:0005643 True cellular_component owl:Class GO:0042992 biolink:NamedThing obsolete negative regulation of transcription factor import into nucleus OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription factor import into nucleus|down regulation of transcription factor import into nucleus|down-regulation of transcription factor import into nucleus|negative regulation of transcription factor import into cell nucleus|downregulation of transcription factor import into nucleus|negative regulation of transcription factor transport from cytoplasm to nucleus|negative regulation of transcription factor-nucleus import The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus. GO:0042308 True biological_process owl:Class GO:0090202 biolink:NamedThing obsolete gene looping OBSOLETE. The formation and maintenance of DNA loops that juxtapose sequentially separated regions of RNA polymerase II-transcribed genes. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20204 This term was obsoleted because it was defined like a molecular function. GO:0140587 tb 2009-12-18T11:56:00Z True biological_process owl:Class GO:0098503 biolink:NamedThing obsolete DNA 3' dephosphorylation OBSOLETE. The process of removing a 3' phosphate group from a DNA molecule. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function, and not a specific coordinated process. dos 2013-09-18T14:51:17Z True biological_process owl:Class GO:0070827 biolink:NamedThing obsolete chromatin maintenance OBSOLETE. The chromatin organization process that preserves chromatin in a stable functional or structural state. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22013 This term was obsoleted because it is redundant with chromatin organization and assembly terms. mah 2009-07-23T04:09:59Z True biological_process owl:Class GO:0052508 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont salicylic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|activation by organism of defense-related symbiont SA-mediated signal transduction pathway|induction by organism of defense-related symbiont SA-mediated signal transduction pathway|induction by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|upregulation by organism of defense-related symbiont SA-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont SA-mediated signal transduction pathway|upregulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0004172 biolink:NamedThing obsolete ecdysteroid UDP-glucosyl/UDP-glucuronosyl transferase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ecdysteroid UDP-glucosyl/UDP-glucuronosyl transferase activity This term was made obsolete because it represents two molecular functions. GO:0050488 True molecular_function owl:Class GO:0043216 biolink:NamedThing obsolete ATPase-coupled daunorubicin transmembrane transporter activity OBSOLETE. Catalysis of the reaction: ATP + H2O + daunorubicin(in) = ADP + phosphate + daunorubicin(out). tmpzr1t_l9r_go_relaxed.owl ATP-dependent daunorubicin transmembrane transporter activity|daunorubicin-transporting ATPase activity|daunorubicin ABC transporter RHEA:33147 This term was obsoleted because it represents a substrate-specific version of the general term GO:0008559 ATPase-coupled xenobiotic transmembrane transporter activity. GO:0008559 True molecular_function owl:Class GO:0031684 biolink:NamedThing obsolete heterotrimeric G-protein complex cycle OBSOLETE. The series of molecular events that generate a signal through the activation of G-protein subunits and recycling of these subunits. tmpzr1t_l9r_go_relaxed.owl The reason for obsoleting is that it is an arbitrary grouping term that groups the molecular functions required for the G-protein complex cycle, and this is not a bona fide biological process. True biological_process owl:Class GO:0030402 biolink:NamedThing obsolete matrilysin-2 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl MMP-26|matrix metalloproteinase 26|matrilysin-2 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0075116 biolink:NamedThing obsolete induction by symbiont of host transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl promotion by symbiont of host transmembrane receptor-mediated cAMP signal transduction|positive regulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction|stimulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction|upregulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction|activation by symbiont of host transmembrane receptor-mediated cAMP signal transduction|positive regulation by symbiont of host transmembrane receptor-mediated cAMP signaling The reason for obsoletion is that there is no evidence that this process exists. True biological_process owl:Class GO:0001617 biolink:NamedThing obsolete growth hormone secretagogue-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl growth hormone secretagogue-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0106179 biolink:NamedThing obsolete translocase activity acting on inorganic cations and their chelates OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates. tmpzr1t_l9r_go_relaxed.owl EC:7.2.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:45:41Z True molecular_function owl:Class GO:0060565 biolink:NamedThing obsolete inhibition of APC-Cdc20 complex activity OBSOLETE. Any process that prevents the activation of APC-Cdc20 complex activity regulating the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl inhibition of mitotic anaphase-promoting complex activity|inhibition of APC activity during mitotic cell cycle|inhibition of APC-Cdc20 complex activity|inhibition of cyclosome activity during mitotic cell cycle|inhibition of APC/C activity during mitotic cell cycle This term was made obsolete because it was not clearly defined and thus used incorrectly in annotation. GO:1990948 dph 2009-04-29T02:29:31Z True biological_process owl:Class GO:0075213 biolink:NamedThing obsolete negative regulation of transmembrane receptor-mediated cAMP signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont transmembrane receptor-mediated cAMP signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont transmembrane receptor-mediated cAMP signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0039597 biolink:NamedThing obsolete induction by virus of host endoribonuclease activity OBSOLETE. Any viral process that activates or increases the frequency, rate or extent of host endoribonuclease activity. tmpzr1t_l9r_go_relaxed.owl viral induction of host RNAse activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. bf 2012-07-04T04:36:49Z True biological_process owl:Class GO:0043859 biolink:NamedThing obsolete cyanophycinase activity OBSOLETE. Catalysis of the hydrolytic cleavage of multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides. tmpzr1t_l9r_go_relaxed.owl cyanophycinase activity GO:0008236 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003790 biolink:NamedThing obsolete actin modulating activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin modulating activity This term was made obsolete because it does not make sense. GO:0030036 True molecular_function owl:Class GO:1902397 biolink:NamedThing obsolete detection of stimulus involved in meiotic spindle checkpoint OBSOLETE. Any detection of stimulus that is involved in meiotic spindle checkpoint. tmpzr1t_l9r_go_relaxed.owl stimulus detection involved in meiotic spindle checkpoint|stimulus sensing involved in meiotic spindle checkpoint|perception of stimulus involved in meiotic spindle checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. jl 2013-09-12T12:01:32Z True biological_process owl:Class GO:0021866 biolink:NamedThing obsolete asymmetric radial glial cell division in forebrain OBSOLETE. The mitotic cell division of a radial glial cell giving rise to a radial glial cell and another cell type. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0000192 biolink:NamedThing obsolete activation of MAPKK (pseudohyphal growth) OBSOLETE. Upregulation of a MAP kinase kinase in the context of regulating pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl activation of MAPKK (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0052333 biolink:NamedThing obsolete modification by organism of cell wall of other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of cell wall of other organism during symbiotic interaction|metabolism by organism of cell wall of other organism This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0005107 biolink:NamedThing obsolete GPI-linked ephrin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPI-linked ephrin This term was made obsolete because it refers to a class of gene products. GO:0046658|GO:0046875 True molecular_function owl:Class GO:0009489 biolink:NamedThing obsolete rubredoxin OBSOLETE. A low molecular weight mononuclear iron protein involved in electron transfer, with an iron tetrahedrally coordinated by the sulfurs of four conserved cysteine residues. tmpzr1t_l9r_go_relaxed.owl rubredoxin GO:0009055 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:0060630 biolink:NamedThing obsolete regulation of M/G1 transition of mitotic cell cycle OBSOLETE. Any process that modulates the rate, frequency, or extent of M/G1 transition of the mitotic cell cycle, the progression from M phase to G1 phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of M/G1 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. dph 2009-05-18T02:48:58Z True biological_process owl:Class GO:0045194 biolink:NamedThing obsolete oxidized low-density lipoprotein catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of oxidized low-density lipoproteins. tmpzr1t_l9r_go_relaxed.owl Ox-LDL catabolism|oxidized low-density lipoprotein breakdown|oxidized low-density lipoprotein degradation|oxidized low-density lipoprotein catabolism|oxidized low-density lipoprotein catabolic process|Ox-LDL catabolic process This term was made obsolete because low-density lipoprotein is a macromolecular complex, not a single class of molecule; its degradation involves the dissociation of non-covalently attached constituents as well as some breaking and reforming of covalent bonds. True biological_process owl:Class GO:0030383 biolink:NamedThing obsolete host-pathogen interaction OBSOLETE. Any interaction between a pathogen and its host organism. tmpzr1t_l9r_go_relaxed.owl host-pathogen interaction This term was made obsolete because more appropriate terms were created. GO:0044403 True biological_process owl:Class GO:0015348 biolink:NamedThing obsolete prostaglandin/thromboxane transporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl prostaglandin/thromboxane transporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015132|GO:0008028 True molecular_function owl:Class GO:0046561 biolink:NamedThing obsolete penicillopepsin activity OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity similar to that of pepsin A, preferring hydrophobic residues at P1 and P1', but also cleaving Gly20-Glu in the B chain of insulin. Clots milk, and activates trypsinogen. tmpzr1t_l9r_go_relaxed.owl Penicillium cyclopium acid proteinase activity|Penicillium caseicolum aspartic proteinase activity|Penicillium roqueforti acid proteinase activity|Penicillium janthinellum aspartic proteinase activity|Penicillium duponti aspartic proteinase activity|Penicillium janthinellum acid proteinase activity|penicillopepsin activity|Penicillium citrinum aspartic proteinase activity|Penicillium citrinum acid proteinase activity|Penicillium expansum aspartic proteinase activity|Penicillium expansum acid proteinase activity|Penicillium janthinellum aspartic protease activity|Penicillium aspartic proteinase activity|acid protease A|peptidase A activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052243 biolink:NamedThing obsolete chemotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl chemotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0060899 biolink:NamedThing obsolete regulation of transcription involved in eye field cell fate commitment of camera-type eye OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neurectodermal cell to a specialized neurectodermal cell that will give rise to the optic vesicle. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0060898 dph 2009-08-13T02:11:48Z True biological_process owl:Class GO:0045768 biolink:NamedThing obsolete positive regulation of anti-apoptosis OBSOLETE. Any process that activates or increases the frequency, rate or extent of anti-apoptosis. tmpzr1t_l9r_go_relaxed.owl upregulation of anti-apoptosis|up-regulation of anti-apoptosis|activation of anti-apoptosis|up regulation of anti-apoptosis|positive regulation of anti-apoptosis|stimulation of anti-apoptosis This term was made obsolete because it was ill-defined. True biological_process owl:Class GO:1902541 biolink:NamedThing obsolete multi-organism micropinocytosis OBSOLETE. A micropinocytosis which involves another organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. bf 2013-12-02T14:26:39Z True biological_process owl:Class GO:0008571 biolink:NamedThing obsolete non-chaperonin molecular chaperone ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. This is a highly diverse group of enzymes that perform many functions that are similar to those of chaperonins. They comprise a number of heat-shock-cognate proteins. They are also active in clathrin uncoating and in the oligomerization of actin. tmpzr1t_l9r_go_relaxed.owl non-chaperonin molecular chaperone ATPase activity GO:0016887 This term was made obsolete because it represents a class of gene products. GO:0006457 True molecular_function owl:Class GO:1901205 biolink:NamedThing obsolete negative regulation of adrenergic receptor signaling pathway involved in heart process OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of a cardiac adrenergic receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl down-regulation of adrenergic receptor signalling pathway involved in heart process|inhibition of adrenergic receptor signaling pathway involved in heart process|down regulation of beta-adrenergic receptor signalling pathway involved in heart process|down-regulation of beta-adrenergic receptor signalling pathway involved in heart process|down regulation of adrenergic receptor signaling pathway involved in heart process|inhibition of adrenergic receptor signalling pathway involved in heart process|downregulation of adrenergic receptor signalling pathway involved in heart process|downregulation of adrenergic receptor signaling pathway involved in heart process|downregulation of beta-adrenergic receptor signalling pathway involved in heart process|inhibition of beta-adrenergic receptor signalling pathway involved in heart process|down-regulation of adrenergic receptor signaling pathway involved in heart process|negative regulation of beta-adrenergic receptor signalling pathway involved in heart process|down regulation of adrenergic receptor signalling pathway involved in heart process|negative regulation of adrenergic receptor signalling pathway involved in heart process https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. hjd 2012-07-30T18:33:14Z True biological_process owl:Class GO:0085021 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type I secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type I secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:20:44Z True biological_process owl:Class GO:0000114 biolink:NamedThing obsolete regulation of transcription involved in G1 phase of mitotic cell cycle OBSOLETE. Any process that regulates transcription such that the target genes are transcribed as part of the G1 phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter during G1 phase of cell cycle|regulation of transcription involved in G1 phase of mitotic cell cycle|G1-specific transcription in mitotic cell cycle This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'. GO:0006357|GO:0000083 True biological_process owl:Class GO:0052247 biolink:NamedThing obsolete positive energy taxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism within a second organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive energy taxis in other organism during symbiotic interaction|positive energy taxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0071429 biolink:NamedThing obsolete snRNA-containing ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl snRNA-containing RNP export from nucleus|snRNA-containing ribonucleoprotein complex export from cell nucleus|snRNA-containing ribonucleoprotein complex nucleus export|snRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. mah 2009-12-16T10:15:38Z True biological_process owl:Class GO:0006502 biolink:NamedThing obsolete C-terminal protein prenylation OBSOLETE. The covalent or non-covalent attachment of a prenyl group to the carboxy-terminus of a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. tmpzr1t_l9r_go_relaxed.owl C-terminal protein prenylation GO:0018342 This term was made obsolete because the process is not exclusive to the carboxy-terminus of a protein. True biological_process owl:Class GO:0006806 biolink:NamedThing obsolete insecticide resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl insecticide resistance GO:0017085 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0008248 biolink:NamedThing obsolete pre-mRNA splicing factor activity OBSOLETE. An activity involved in the removal of an intron from a pre-mRNA. tmpzr1t_l9r_go_relaxed.owl pre-mRNA splicing factor activity This term was made obsolete because it describes a biological process. GO:0008380 True molecular_function owl:Class GO:0052050 biolink:NamedThing obsolete interaction with host via substance secreted by type IV secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other organism by a type IV secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0031079 biolink:NamedThing obsolete picornain 3C activity OBSOLETE. Catalysis of the selective cleavage of GlnGly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. tmpzr1t_l9r_go_relaxed.owl picornavirus endopeptidase 3C activity|poliovirus protease 3C activity|coxsackievirus 3C proteinase activity|rhinovirus proteinase 3C|hepatitis A virus 3C proteinase activity|picornain 3C activity|foot-and-mouth protease 3C activity|tomato ringspot nepovirus 3C-related protease|3C protease activity|poliovirus proteinase 3C|rhinovirus protease 3C activity|cysteine proteinase 3C|foot-and-mouth-disease virus proteinase 3C|protease 3C|3C proteinase activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0036044 biolink:NamedThing obsolete protein malonylation OBSOLETE. The modification of a protein amino acid by the addition of a malonyl (CO-CH2-CO) group. tmpzr1t_l9r_go_relaxed.owl protein malonylation GO:0044394 This term was made obsolete because it accidentally shared the same ID as negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway by negative regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity. New id is GO:0044394. True biological_process owl:Class GO:0004186 biolink:NamedThing obsolete carboxypeptidase C activity OBSOLETE. Catalysis of the release of a C-terminal amino acid with a broad specificity. tmpzr1t_l9r_go_relaxed.owl vacuolar carboxypeptidase Y|carboxypeptidase Y activity|lysosomal protective protein activity|deamidase|serine-type carboxypeptidase I activity|carboxypeptidase C activity|serine carboxypeptidase I activity|cathepsin A activity|lysosomal carboxypeptidase A GO:0004185 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0050444 biolink:NamedThing obsolete aquacobalamin reductase (NADPH) activity OBSOLETE. Catalysis of the reaction: 2 cob(II)alamin + NADP+ = 2 aquacob(III)alamin + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl NADPH:aquacob(III)alamin oxidoreductase activity|cob(II)alamin:NADP+ oxidoreductase activity|aquacobalamin (reduced nicotinamide adenine dinucleotide phosphate) activity|NADPH-linked aquacobalamin reductase activity|aquacobalamin (reduced nicotinamide adenine dinucleotide phosphate) reductase activity|NADPH2:aquacob(III)alamin oxidoreductase activity https://github.com/geneontology/go-ontology/issues/20679 RHEA:20752|MetaCyc:AQUACOBALAMIN-REDUCTASE-NADPH-RXN|EC:1.16.1.5 The term was obsoleted because it is not known to be catalyzed by any gene product. True molecular_function owl:Class GO:0051440 biolink:NamedThing obsolete regulation of ubiquitin-protein ligase activity involved in meiotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of ubiquitin ligase activity during the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic anaphase-promoting complex regulator|meiotic ubiquitin ligase regulator|meiotic ubiquitin-protein ligase regulator|regulation of ubiquitin ligase activity during meiotic cell cycle|regulation of ubiquitin-protein ligase activity during meiotic cell cycle|meiotic SCF complex regulator|meiotic APC regulator https://github.com/geneontology/go-ontology/issues/15196 This term was obsoleted because it should be captured as a GO-CAM model. True biological_process owl:Class GO:0004444 biolink:NamedThing obsolete inositol-1,4,5-trisphosphate 1-phosphatase OBSOLETE. The removal of a phosphate group from the carbon-1 position of D-myo-inositol 1,4,5-trisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol-1,4,5-trisphosphate 1-phosphatase This term was made obsolete because the existence of this function has not been established. GO:0046030 True molecular_function owl:Class GO:0019078 biolink:NamedThing obsolete lytic viral budding OBSOLETE. A form of viral release in which the viral particles bud out through cellular membranes, resulting in cell lysis. It is also a form of viral envelopment. tmpzr1t_l9r_go_relaxed.owl lytic viral budding This term was made obsolete because it does not appear to correspond to a real biological process. True biological_process owl:Class GO:0004184 biolink:NamedThing obsolete lysine carboxypeptidase activity OBSOLETE. Catalysis of the reaction: peptidyl-L-lysine (or peptidyl-L-arginine) + H2O = peptide + L-lysine (or L-arginine). Release of a C-terminal basic amino acid, preferentially lysine; inactivates bradykinin and anaphylatoxins in blood plasma. tmpzr1t_l9r_go_relaxed.owl kininase Ia|lysine carboxypeptidase activity|CPase N|creatinine kinase convertase activity|peptidyl-L-lysine(-L-arginine) hydrolase|anaphylatoxin inactivator activity|creatine kinase conversion factor|bradykinin-decomposing enzyme|carboxypeptidase N activity|bradykinase activity|hippuryllysine hydrolase activity|kininase I activity|lysine (arginine) carboxypeptidase activity|arginine carboxypeptidase activity|plasma carboxypeptidase B|lysine(arginine) carboxypeptidase activity GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0042598 biolink:NamedThing obsolete vesicular fraction OBSOLETE. Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized. tmpzr1t_l9r_go_relaxed.owl vesicular fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0031982 True cellular_component owl:Class GO:0030190 biolink:NamedThing obsolete chaperone inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of a molecular chaperone. tmpzr1t_l9r_go_relaxed.owl chaperone inhibitor activity This term was made obsolete because it refers to a obsolete molecular function term, 'chaperone activity'. GO:0051082|GO:0051787|GO:0006457 True molecular_function owl:Class GO:0003702 biolink:NamedThing obsolete RNA polymerase II transcription factor activity OBSOLETE. Functions to initiate or regulate RNA polymerase II transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006366|GO:0000981 True molecular_function owl:Class GO:0035528 biolink:NamedThing obsolete UDP-N-acetylglucosamine biosynthesis involved in chitin biosynthesis OBSOLETE. The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine in glycosidic linkage with uridine diphosphate, that contribute to the biosynthesis of chitin. tmpzr1t_l9r_go_relaxed.owl UDP-GlcNAc biosynthetic process involved in chitin biosynthetic process|UDP-N-acetylglucosamine synthesis involved in chitin biosynthesis|UDP-GlcNAc biosynthetic process involved in chitin biosynthesis|UDP-N-acetylglucosamine anabolism involved in chitin biosynthesis|UDP-GlcNAc biosynthesis involved in chitin biosynthesis|UDP-N-acetylglucosamine formation involved in chitin biosynthesis|UDP-N-acetylglucosamine biosynthetic process involved in chitin biosynthetic process https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. bf 2010-05-05T04:49:49Z True biological_process owl:Class GO:0052349 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont reactive oxygen species production OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the production of reactive oxygen species as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related symbiont oxidative burst|positive regulation by organism of defense-related symbiont AOS production|positive regulation by organism of defense-related symbiont ROS production|positive regulation by organism of defense-related symbiont ROI production|positive regulation by organism of defense-related symbiont respiratory burst|positive regulation by organism of defense-related symbiont reactive oxygen species production|positive regulation by organism of defense-related symbiont reactive oxidative species production|positive regulation by organism of defense-related symbiont reactive oxygen intermediate production|positive regulation by organism of defense-related symbiont metabolic burst|positive regulation by organism of defense-related symbiont active oxygen species production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1901225 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter involved in heart development OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of transcription from RNA polymerase II promoter involved in heart development. tmpzr1t_l9r_go_relaxed.owl negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|downregulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|down-regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|down regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|down regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|down regulation of regulation of global transcription from Pol II promoter involved in cardiac development|inhibition of global transcription regulation from Pol II promoter involved in dorsal vessel development|down-regulation of global transcription regulation from Pol II promoter involved in cardiac development|down regulation of regulation of global transcription from Pol II promoter involved in heart development|negative regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|inhibition of regulation of global transcription from Pol II promoter involved in cardiac development|inhibition of regulation of transcription from Pol II promoter involved in cardiac development|downregulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|negative regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|negative regulation of global transcription regulation from Pol II promoter involved in cardiac development|downregulation of regulation of global transcription from Pol II promoter involved in cardiac development|down regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|down regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|down-regulation of regulation of transcription from RNA polymerase II promoter involved in heart development|inhibition of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|inhibition of regulation of transcription from RNA polymerase II promoter involved in heart development|down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|down-regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|down-regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|inhibition of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|down-regulation of global transcription regulation from Pol II promoter involved in heart development|down-regulation of regulation of global transcription from Pol II promoter involved in heart development|inhibition of regulation of transcription from Pol II promoter involved in heart development|down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|down regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|down regulation of regulation of transcription from Pol II promoter involved in cardiac development|downregulation of regulation of transcription from RNA polymerase II promoter involved in heart development|negative regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|inhibition of global transcription regulation from Pol II promoter involved in cardiac development|down regulation of global transcription regulation from Pol II promoter involved in cardiac development|downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|downregulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|down regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|inhibition of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|down-regulation of regulation of transcription from Pol II promoter involved in heart development|downregulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|downregulation of global transcription regulation from Pol II promoter involved in heart development|downregulation of global transcription regulation from Pol II promoter involved in cardiac development|down regulation of regulation of transcription from RNA polymerase II promoter involved in heart development|inhibition of global transcription regulation from Pol II promoter involved in heart development|downregulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|inhibition of regulation of global transcription from Pol II promoter involved in dorsal vessel development|inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|down-regulation of regulation of global transcription from Pol II promoter involved in cardiac development|down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|downregulation of global transcription regulation from Pol II promoter involved in dorsal vessel development|down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of regulation of global transcription from Pol II promoter involved in heart development|downregulation of regulation of global transcription from Pol II promoter involved in heart development|down regulation of regulation of transcription from Pol II promoter involved in heart development|down regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development|down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development|negative regulation of transcription from RNA polymerase II promoter involved in heart development|negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|inhibition of regulation of transcription from Pol II promoter involved in dorsal vessel development|negative regulation of regulation of transcription from Pol II promoter involved in heart development|negative regulation of regulation of transcription from Pol II promoter involved in cardiac development|inhibition of regulation of global transcription from Pol II promoter involved in heart development|downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development|downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|down-regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development|negative regulation of regulation of global transcription from Pol II promoter involved in cardiac development|negative regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of global transcription regulation from Pol II promoter involved in heart development|down regulation of global transcription regulation from Pol II promoter involved in heart development|negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|down-regulation of regulation of transcription from Pol II promoter involved in cardiac development|downregulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development|inhibition of regulation of transcription from RNA polymerase II promoter, global involved in heart development|negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development|downregulation of regulation of transcription from Pol II promoter involved in heart development|downregulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|inhibition of regulation of transcription from RNA polymerase II promoter involved in cardiac development|negative regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development|down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development|down regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development|downregulation of regulation of transcription from Pol II promoter involved in cardiac development|down-regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development This term was obsoleted at the TermGenie Gatekeeper stage. GO:0007507|GO:0000122 rl 2012-08-07T07:04:07Z True biological_process owl:Class GO:0005530 biolink:NamedThing obsolete lectin OBSOLETE. Lectins are proteins obtained particularly from the seeds of leguminous plants, but also from many other plant and animal sources, that have binding sites for specific mono or oligosaccharides in cell walls or membranes. They thereby change the physiology of the membrane to cause agglutination, mitosis, or other biochemical changes in the cell. tmpzr1t_l9r_go_relaxed.owl lectin This term was made obsolete because it refers to a class of gene products. GO:0030246|GO:0007157 True molecular_function owl:Class GO:0075339 biolink:NamedThing obsolete positive regulation of growth or development of symbiont during interaction with host OBSOLETE. Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of growth or development of symbiont during interaction with host This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0052447 biolink:NamedThing obsolete modulation by organism of symbiont ethylene-mediated defense response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the ethylene-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont ethylene-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0051818 biolink:NamedThing obsolete disruption of cells of other organism involved in symbiotic interaction OBSOLETE. A process in which an organism has a negative effect on the functioning of the second organism's cells, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl disruption of cells of other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0019791 biolink:NamedThing obsolete FAT10 hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl FAT10 hydrolase activity This term was made obsolete because it cannot be determined what its intended meaning was, because the term name is not found in the literature. GO:0019783 True molecular_function owl:Class GO:0052502 biolink:NamedThing obsolete positive regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of symbiont MAP kinase-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway|upregulation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway|stimulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway|up-regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway|activation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway|induction by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont MAPK-mediated signal transduction pathway|up regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway|activation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont mitogen-activated protein kinase-mediated signal transduction pathway The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1900382 biolink:NamedThing obsolete regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of thiamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of thiamine formation by regulation of transcription from RNA polymerase II promoter|regulation of thiamine biosynthesis by regulation of transcription from RNA polymerase II promoter|regulation of thiamin biosynthetic process by regulation of transcription from RNA polymerase II promoter|regulation of thiamine synthesis by regulation of transcription from RNA polymerase II promoter|regulation of thiamine anabolism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-17T04:05:24Z True biological_process owl:Class GO:0046909 biolink:NamedThing obsolete intermembrane transport OBSOLETE. The directed movement of substances between any membrane of a cell, including the plasma membrane and its regions. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term was incorrectly named, defined, and placed in the ontology, and thus had been used to annotate two unrelated processes of [intermembrane lipid transfer] and processes related to [vesicular transport]. It was also inappropriately used as the parent term for [protein transport from ciliary membrane to plasma membrane], which has already been moved to an appropriate location as a child of [protein transport within lipid bilayer]. GO:0120009|GO:0016192 True biological_process owl:Class GO:0005624 biolink:NamedThing obsolete membrane fraction OBSOLETE. That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes. tmpzr1t_l9r_go_relaxed.owl membrane fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0016020 True cellular_component owl:Class GO:0106195 biolink:NamedThing obsolete translocase activty acting on inorganic anions linked to oxidoreductase reactions OBSOLETE. Catalysis of the translocation of inorganic anions linked to oxidoreductase reactions. tmpzr1t_l9r_go_relaxed.owl EC:7.3.1.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:13:05Z True molecular_function owl:Class GO:0040030 biolink:NamedThing obsolete regulation of molecular function, epigenetic OBSOLETE. Any heritable epigenetic process that modulates the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya. tmpzr1t_l9r_go_relaxed.owl regulation of protein activity, epigenetic https://github.com/geneontology/go-ontology/issues/22203 This term was obsoleted because it is not an active process. True biological_process owl:Class GO:0032235 biolink:NamedThing obsolete negative regulation of calcium ion transport via store-operated calcium channel activity OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of calcium ions via a store-operated calcium channel. tmpzr1t_l9r_go_relaxed.owl down-regulation of calcium ion transport via store-operated calcium channel|negative regulation of calcium ion transport via store-operated calcium channel activity|negative regulation of store-operated calcium channel activity|negative regulation of calcium transport via store-operated calcium channel|inhibition of calcium ion transport via store-operated calcium channel|downregulation of calcium ion transport via store-operated calcium channel|down regulation of calcium ion transport via store-operated calcium channel This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0015279 True biological_process owl:Class GO:0005489 biolink:NamedThing obsolete electron transporter activity OBSOLETE. Enables the directed movement of electrons into, out of, within or between cells. tmpzr1t_l9r_go_relaxed.owl cytochrome d|electron transporter activity|respiratory chain cytochrome b6|monoheme class I cytochrome c|flavodoxin|class IIa cytochrome c|nonaheme cytochrome c|cytochrome b|Rieske iron-sulfur protein|diheme class I cytochrome c|cytochrome b5|class IV cytochrome c|high-molecular-weight cytochrome c (hexadecaheme)|class II cytochrome c|flavin-containing electron transporter|class IIb cytochrome c|cytochrome c3 (tetraheme)|cytochrome c7 (triheme)|class III cytochrome c|electron transfer carrier|cytochrome c554|class I cytochrome c GO:0009055 This term was made obsolete because the activity described by the definition does not exist. True molecular_function owl:Class GO:1905924 biolink:NamedThing obsolete regulation of invadopodium assembly OBSOLETE. Any process that modulates the frequency, rate or extent of invadopodium assembly. tmpzr1t_l9r_go_relaxed.owl regulation of invadopodium formation This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:38:30Z True biological_process owl:Class GO:0052139 biolink:NamedThing obsolete negative chemotaxis in host OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0030820 biolink:NamedThing obsolete regulation of cAMP catabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl regulation of 3',5'-cAMP catabolic process|regulation of cyclic AMP catabolic process|regulation of adenosine 3',5'-cyclophosphate catabolism|regulation of 3',5' cAMP catabolic process|regulation of cAMP degradation|regulation of cAMP breakdown|regulation of cyclic AMP catabolism|regulation of cAMP catabolism|regulation of 3',5' cAMP catabolism|regulation of adenosine 3',5'-cyclophosphate catabolic process|regulation of 3',5'-cAMP catabolism The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0042153 biolink:NamedThing obsolete RPTP-like protein binding OBSOLETE. Binding to proteins with similar structure/function to receptor protein tyrosine phosphatases. tmpzr1t_l9r_go_relaxed.owl receptor protein tyrosine phosphatase-like protein binding|RPTP-like protein binding GO:0005515 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class RO:0002305 biolink:NamedThing causally upstream of, negative effect tmpzr1t_l9r_go_relaxed.owl RO:0002305 external causally_upstream_of,_negative_effect GO:0075337 biolink:NamedThing obsolete positive regulation of growth or development of symbiont on or near host surface OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of growth or development of symbiont on or near host surface This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0001027 biolink:NamedThing obsolete RNA polymerase III type 1 promoter TFIIIB-type transcription factor activity OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 1 promoter by TFIIIA-type and TFIIIC-type factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 1 promoter polymerase recruiting transcription factor activity The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. krc 2010-08-23T12:50:20Z True molecular_function owl:Class GO:1905113 biolink:NamedThing obsolete positive regulation of centromere clustering at the mitotic nuclear envelope OBSOLETE. Any process that activates or increases the frequency, rate or extent of centromere clustering at the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl activation of kinetochore localization at spindle pole body|up regulation of rabl configuration|activation of kinetochore clustering at SPB|positive regulation of kinetochore localization at spindle pole body|positive regulation of kinetochore clustering at the old mitotic spindle pole body|upregulation of kinetochore clustering at spindle pole body|up-regulation of centromere-SPB clustering|up-regulation of rabl configuration|up regulation of centromere clustering at the nuclear periphery|upregulation of rabl configuration|upregulation of kinetochore clustering at SPB|up-regulation of kinetochore clustering at the old mitotic spindle pole body|up-regulation of kinetochore clustering at spindle pole body|up-regulation of centromere clustering at the nuclear periphery|positive regulation of kinetochore clustering at spindle pole body|upregulation of centromere clustering at the nuclear envelope|up regulation of kinetochore clustering at SPB|activation of rabl configuration|up regulation of kinetochore clustering at the old mitotic spindle pole body|positive regulation of rabl configuration|activation of centromere clustering at the nuclear periphery|positive regulation of centromere-SPB clustering|up-regulation of kinetochore localization at spindle pole body|up regulation of centromere clustering at the nuclear envelope|up-regulation of centromere clustering at the nuclear envelope|up regulation of kinetochore localization at spindle pole body|activation of kinetochore clustering at spindle pole body|upregulation of kinetochore localization at spindle pole body|upregulation of centromere clustering at the nuclear periphery|activation of kinetochore clustering at the old mitotic spindle pole body|upregulation of kinetochore clustering at the old mitotic spindle pole body|positive regulation of centromere clustering at the nuclear periphery|activation of centromere clustering at the nuclear envelope|up-regulation of kinetochore clustering at SPB|activation of centromere-SPB clustering|up regulation of centromere-SPB clustering|up regulation of kinetochore clustering at spindle pole body|upregulation of centromere-SPB clustering|positive regulation of kinetochore clustering at SPB This term was obsoleted because it represented a phenotype. al 2016-04-06T16:25:49Z True biological_process owl:Class GO:0000363 biolink:NamedThing obsolete first U12-type spliceosomal transesterification activity OBSOLETE. Catalysis of the first transesterification reaction of U12-type spliceosomal mRNA splicing. The intron branch site adenosine is the nucleophile attacking the 5' splice site, resulting in cleavage at this position. In cis splicing, this is the step that forms a lariat structure of the intron RNA, which is still joined to the 3' exon. The catalytic site is thought to be formed by U6atac snRNA and/or U2atac snRNA, and/or associated proteins. tmpzr1t_l9r_go_relaxed.owl lariat formation, 5'-splice site cleavage|first U12-type spliceosomal transesterification activity GO:0000384 This term was made obsolete because the activities used in the U2- and U12-type complexes are the same. The cellular component ontology should (and does) represent the two different complexes, but the molecular function ontology should not. True molecular_function owl:Class GO:0085003 biolink:NamedThing obsolete interaction with host via secreted substance released from stylet OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the stylet, a hollow protrusible spear-like structure in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T02:53:56Z True biological_process owl:Class GO:0033666 biolink:NamedThing obsolete positive regulation of growth or development of symbiont in host OBSOLETE. Any process by which the symbiont activates, maintains or increases its size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of invasive growth|positive regulation of growth or development of symbiont in host|up regulation of growth or development of organism within host|positive regulation of growth or development of symbiont within host|upregulation of growth or development of organism within host|up-regulation of growth or development of organism within host This term was made obsolete because it contained a conjunction (or). GO:0044129 True biological_process owl:Class GO:0005696 biolink:NamedThing obsolete telomere OBSOLETE. A complex of DNA and protein that seals the end of a chromosome. The telomeric DNA consists of simple tandemly repeated sequences specific for each species. Typically one strand is G-rich and the other C-rich. The G-rich strand forms a 3'-terminal overhang, the length of which varies with species. The single strand overhang is bound by a variety of proteins, including telomere capping proteins that bind to the single-stranded DNA. tmpzr1t_l9r_go_relaxed.owl telomere This term was made obsolete because the definition was too sequence oriented and too restrictive. GO:0000781|GO:0000782 True cellular_component owl:Class GO:0005057 biolink:NamedThing obsolete signal transducer activity, downstream of receptor OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell. tmpzr1t_l9r_go_relaxed.owl receptor signalling protein activity|intracellular signal transducer activity|receptor signaling protein activity https://github.com/geneontology/go-ontology/issues/14232 This term was obsoleted because it was not clearly defined. True molecular_function owl:Class GO:0010871 biolink:NamedThing obsolete negative regulation of receptor biosynthetic process OBSOLETE. Any process that decreases the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0006969 biolink:NamedThing obsolete melanotic tumor response OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl melanotic mass response|melanotic tumor response This term was made obsolete because it was undefined and represented an abnormal process. True biological_process owl:Class GO:0016735 biolink:NamedThing obsolete vanadium-iron nitrogenase activity OBSOLETE. Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + nitrogen + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate. tmpzr1t_l9r_go_relaxed.owl vanadium-iron nitrogenase activity This term was made obsolete because it represents a cellular component. GO:0016163|GO:0016613 True molecular_function owl:Class GO:0019717 biolink:NamedThing obsolete synaptosome OBSOLETE. Any of the discrete particles (nerve-ending particles) formed from the clublike presynaptic nerve endings that resist disruption and are snapped or torn off their attachments when brain tissue is homogenized in media isosmotic to plasma. tmpzr1t_l9r_go_relaxed.owl synaptosome Wikipedia:Synaptosome This term was made obsolete because it refers to a result of cell homogenization and not a bona fide cellular component. GO:0043005 True cellular_component owl:Class GO:0030800 biolink:NamedThing obsolete negative regulation of cyclic nucleotide metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl down regulation of cyclic nucleotide metabolic process|negative regulation of cyclic nucleotide metabolism|inhibition of cyclic nucleotide metabolic process|down-regulation of cyclic nucleotide metabolic process|downregulation of cyclic nucleotide metabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:1900529 biolink:NamedThing obsolete regulation of cell shape involved in cellular response to glucose starvation OBSOLETE. Any regulation of cell shape that is involved in cellular response to glucose starvation. tmpzr1t_l9r_go_relaxed.owl regulation of cell shape involved in cellular response to glucose starvation This term was obsoleted at the TermGenie Gatekeeper stage. al 2012-05-08T01:43:38Z True biological_process owl:Class GO:0035557 biolink:NamedThing obsolete intracellular signal transduction involved in cell surface receptor linked signaling OBSOLETE. The process in which a signal is passed on from a receptor at the cell surface to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. tmpzr1t_l9r_go_relaxed.owl intracellular signaling cascade involved in cell surface receptor linked signaling|intracellular signal transduction involved in cell surface receptor linked signaling|intracellular signaling chain involved in cell surface receptor signaling|intracellular signal transduction involved in cell surface receptor linked signalling This term was made obsolete because the syntax of the term is incorrect. bf 2010-05-14T01:31:05Z True biological_process owl:Class GO:0004178 biolink:NamedThing obsolete leucyl aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, Xaa-Xbb-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Xbb may be Pro. tmpzr1t_l9r_go_relaxed.owl peptidase S activity|leucine aminopeptidase activity|FTBL proteins|leucyl peptidase activity|aminopeptidase II|leucinamide aminopeptidase activity|leucyl aminopeptidase activity|cathepsin III|cytosol aminopeptidase activity|proteinates FTBL|leucinaminopeptidase activity|L-leucine aminopeptidase activity MetaCyc:3.4.11.1-RXN|EC:3.4.11.1 This term was made obsolete because it represents a gene product. GO:0004177|GO:0008235 True molecular_function owl:Class GO:1900375 biolink:NamedThing obsolete positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl up-regulation of myo-inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of inositol synthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of myo-inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of vitamin Bh biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of inositol formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|activation of myo-inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|positive regulation of myo-inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of inositol anabolism by positive regulation of transcription from RNA polymerase II promoter|up-regulation of inositol synthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin Bh biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of myo-inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of inositol anabolism by positive regulation of transcription from RNA polymerase II promoter|activation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up-regulation of myo-inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of vitamin Bh biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of vitamin Bh biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of vitamin Bh biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of myo-inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of inositol synthesis by positive regulation of transcription from RNA polymerase II promoter|activation of inositol synthesis by positive regulation of transcription from RNA polymerase II promoter|up regulation of vitamin Bh biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of inositol anabolism by positive regulation of transcription from RNA polymerase II promoter|upregulation of vitamin Bh biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of inositol anabolism by positive regulation of transcription from RNA polymerase II promoter|activation of inositol formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of inositol formation by positive regulation of transcription from RNA polymerase II promoter|up-regulation of inositol anabolism by positive regulation of transcription from RNA polymerase II promoter|upregulation of inositol formation by positive regulation of transcription from RNA polymerase II promoter|activation of myo-inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|activation of inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter|upregulation of vitamin Bh biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin Bh biosynthesis by positive regulation of transcription from RNA polymerase II promoter|up-regulation of inositol formation by positive regulation of transcription from RNA polymerase II promoter|positive regulation of inositol synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of myo-inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|up regulation of myo-inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|activation of vitamin Bh biosynthetic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of inositol biosynthesis by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. krc 2012-04-17T12:45:48Z True biological_process owl:Class GO:0005957 biolink:NamedThing obsolete debranching enzyme OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl debranching enzyme This term was made obsolete because it is ambiguous (there are several debranching enzymes) and because it probably represents the glycogen debranching enzyme which is a single gene product and not a complex. GO:0043033 True cellular_component owl:Class GO:0052208 biolink:NamedThing obsolete modification of morphology or physiology of other organism via substance secreted by type IV secretion system involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a second organism, mediated by a substance secreted by a type IV secretion system in the first organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of morphology or physiology of other organism via substance secreted by type IV secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0030192 biolink:NamedThing obsolete Hsp70/Hsc70 protein regulator activity OBSOLETE. Modulates the activity of chaperones of the Hsp70/Hsc70 class. tmpzr1t_l9r_go_relaxed.owl Hsp70/Hsc70 protein regulator activity This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp70/Hsc70 protein activity'. GO:0051787|GO:0006457|GO:0051082 True molecular_function owl:Class GO:1990802 biolink:NamedThing obsolete protein phosphorylation involved in DNA double-strand break processing OBSOLETE. Any protein phosphorylation that is required for DNA double-strand break processing. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphorylation involved in DNA double-strand break processing https://github.com/geneontology/go-ontology/issues/14137 This term has been obsoleted because it represents a GO-CAM model. rb 2015-07-16T20:43:39Z True biological_process owl:Class GO:0007401 biolink:NamedThing obsolete pan-neural process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pan-neural process This term was made obsolete because its meaning is ambiguous. GO:0050877|GO:0007399 True biological_process owl:Class GO:0007230 biolink:NamedThing obsolete calcium-o-sensing receptor pathway OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl calcium-o-sensing receptor pathway This term was made obsolete because it does not make sense. GO:0019722 True biological_process owl:Class GO:0019443 biolink:NamedThing obsolete tryptophan catabolic process, using tryptophanase OBSOLETE. The chemical reactions and pathways resulting in the breakdown of tryptophan, catalyzed by the enzyme tryptophanase (EC:4.1.99.1). tmpzr1t_l9r_go_relaxed.owl tryptophan catabolic process, using tryptophanase|tryptophan breakdown, using tryptophanase|tryptophan degradation, using tryptophanase This term was made obsolete because it refers to a one-step pathway. GO:0009034|GO:0006569 True biological_process owl:Class GO:0033697 biolink:NamedThing obsolete positive regulation of extent of heterochromatin assembly OBSOLETE. Any process that increases the extent of heterochromatin formation; increases the size of a chromosomal region converted to heterochromatin. tmpzr1t_l9r_go_relaxed.owl positive regulation of heterochromatin spreading|positive regulation of extent of heterochromatin formation https://github.com/geneontology/go-ontology/issues/22028 This term has been obsoleted because there is no evidence it exists. GO:0031507 True biological_process owl:Class GO:1904165 biolink:NamedThing obsolete positive regulation of triglyceride homeostasis OBSOLETE. Any process that activates or increases the frequency, rate or extent of triglyceride homeostasis. tmpzr1t_l9r_go_relaxed.owl upregulation of triacylglycerol homeostasis|upregulation of triglyceride homeostasis|up regulation of triacylglycerol homeostasis|activation of triglyceride homeostasis|up-regulation of triglyceride homeostasis|activation of triacylglycerol homeostasis|up regulation of triglyceride homeostasis|up-regulation of triacylglycerol homeostasis|positive regulation of triacylglycerol homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. rph 2015-04-22T11:04:55Z True biological_process owl:Class GO:0030601 biolink:NamedThing obsolete aminopeptidase B activity OBSOLETE. Catalysis of the release of N-terminal Arg and Lys from oligopeptides when P1' is not Pro. Also acts on arylamides of Arg and Lys. tmpzr1t_l9r_go_relaxed.owl arginyl aminopeptidase activity|L-arginine aminopeptidase activity|aminopeptidase B activity|Cl--activated arginine aminopeptidase activity|arylamidase II|cytosol aminopeptidase IV GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030364 biolink:NamedThing obsolete cleavage and polyadenylylation specificity factor activity OBSOLETE. A factor required in mRNA 3' end processing for both the cleavage and poly(A) addition reactions and, consistent with this function, recognizes AAUAAA, a signal also essential for both reactions. tmpzr1t_l9r_go_relaxed.owl cleavage and polyadenylation specificity factor activity|cleavage/polyadenylation specificity factor activity|cleavage and polyadenylylation specificity factor activity|CPSF GO:0005847 This term was made obsolete because it describes a cellular component. GO:0006379|GO:0006378 True molecular_function owl:Class GO:0072439 biolink:NamedThing obsolete detection of stimulus involved in meiotic DNA replication checkpoint OBSOLETE. The series of events in which information about whether DNA replication is complete is received and converted into a molecular signal, contributing to a meiotic DNA replication checkpoint. tmpzr1t_l9r_go_relaxed.owl meiotic DNA replication checkpoint sensor mechanism|sensing involved in meiotic DNA replication checkpoint|meiotic DNA replication checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:59:08Z True biological_process owl:Class GO:0007579 biolink:NamedThing obsolete senescence factor accumulation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl senescence factor accumulation This term was made obsolete because it does not represent a process. True biological_process owl:Class GO:0052224 biolink:NamedThing obsolete energy taxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism within a second organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl energy taxis within other organism during symbiotic interaction|energy taxis in other organism during symbiotic interaction This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0005570 biolink:NamedThing obsolete small nuclear RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small nuclear RNA This term was made obsolete because it represents gene products. GO:0017069|GO:0000375 True molecular_function owl:Class GO:0075064 biolink:NamedThing obsolete negative regulation invasive hypha growth OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont invasive hypha formation within host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont invasive hypha formation within host|negative regulation of symbiont invasive hypha formation in host https://github.com/geneontology/go-ontology/issues/19013 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0075092 biolink:NamedThing obsolete negative regulation by host of symbiont signal transduction mediated by G-protein alpha subunit OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont signal transduction mediated by G-protein alpha subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0005626 biolink:NamedThing obsolete insoluble fraction OBSOLETE. That fraction of cells, prepared by disruptive biochemical methods, that is not soluble in water. tmpzr1t_l9r_go_relaxed.owl particle-bound|insoluble fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005575 True cellular_component owl:Class GO:1990214 biolink:NamedThing obsolete negative regulation by symbiont of host protein levels OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of protein levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. ml 2013-10-10T15:39:45Z True biological_process owl:Class GO:0100004 biolink:NamedThing obsolete positive regulation of peroxisome organization by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates peroxisome organization. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0004251 biolink:NamedThing obsolete X-Pro dipeptidase activity OBSOLETE. Catalysis of the hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro. tmpzr1t_l9r_go_relaxed.owl gamma-peptidase activity|proline dipeptidase activity|imidodipeptidase activity|peptidase D|X-Pro dipeptidase activity|Xaa-Pro dipeptidase activity|prolidase activity MetaCyc:3.4.13.9-RXN|EC:3.4.13.9 This term was made obsolete because it represents a gene product. GO:0016805|GO:0008235 True molecular_function owl:Class GO:0030188 biolink:NamedThing obsolete chaperone regulator activity OBSOLETE. Modulates the activity of a molecular chaperone. tmpzr1t_l9r_go_relaxed.owl chaperone regulator activity This term was made obsolete because it refers to a obsolete molecular function term, 'chaperone activity'. GO:0051082|GO:0051787|GO:0006457 True molecular_function owl:Class GO:0044045 biolink:NamedThing obsolete interaction with host via substance in symbiont cell outer membrane OBSOLETE. An interaction with the host organism mediated by a substance in the symbiont cell outer membrane - a lipid bilayer that forms the outermost layer of the symbiont cell envelope. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that these terms conflate a process and the mechanism of secretion of the compound mediating the process. True biological_process owl:Class GO:2000285 biolink:NamedThing obsolete negative regulation of regulation of excitatory postsynaptic membrane potential OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of excitatory postsynaptic membrane potential. tmpzr1t_l9r_go_relaxed.owl negative regulation of regulation of excitatory postsynaptic membrane potential|negative regulation of EPSP GO:0090394 This term was made obsolete because it makes no sense and was added in error. vk 2010-12-12T03:27:21Z True biological_process owl:Class GO:0005430 biolink:NamedThing obsolete synaptic vesicle amine transmembrane transporter activity OBSOLETE. Enables the transfer of amines across synaptic vesicle membranes. tmpzr1t_l9r_go_relaxed.owl The class was obsoleted because the cellular location of a function should not be part of the class label. GO:0005275 True molecular_function owl:Class GO:0075336 biolink:NamedThing obsolete negative regulation of symbiont adenylate cyclase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont adenylate cyclase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0038074 biolink:NamedThing obsolete MAP kinase phosphatase activity involved in regulation of conjugation with cellular fusion OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that contributes to conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase activity involved in regulation of conjugation with cellular fusion This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:31:57Z True molecular_function owl:Class GO:0004202 biolink:NamedThing obsolete caspase-2 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-2 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004246 biolink:NamedThing obsolete peptidyl-dipeptidase A activity OBSOLETE. Catalysis of the release of a C-terminal dipeptide, Xaa-Xbb from oligopeptide-Xaa-Xbb, when Xaa is not Pro, and Xbb is neither Asp nor Glu. Converts angiotensin I to angiotensin II. tmpzr1t_l9r_go_relaxed.owl peptidyl dipeptidase I activity|peptidase P activity|carboxycathepsin activity|dipeptidyl carboxypeptidase I activity|DCP|ACE activity|peptidyl dipeptidase-4|PDH|angiotensin converting enzyme|peptidyl dipeptidase A|endothelial cell peptidyl dipeptidase activity|peptidyl dipeptide hydrolase activity|peptidyl-dipeptide hydrolase activity|peptidyl-dipeptidase A activity|dipeptide hydrolase|peptidyldipeptide hydrolase activity|angiotensin I-converting enzyme activity|kininase II activity EC:3.4.15.1|MetaCyc:3.4.15.1-RXN This term was made obsolete because it represents a gene product. GO:0008237|GO:0008241 True molecular_function owl:Class GO:0009077 biolink:NamedThing obsolete histidine family amino acid catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of amino acids of the histidine family. tmpzr1t_l9r_go_relaxed.owl histidine family amino acid catabolic process|histidine family amino acid breakdown|histidine family amino acid degradation|histidine family amino acid catabolism GO:0006548 This term was made obsolete because it was an unnecessary grouping term, as histidine would be the only member of this family. True biological_process owl:Class GO:0042096 biolink:NamedThing obsolete alpha-beta T cell receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl alpha-beta T cell receptor activity This term was made obsolete because it describes a receptor type, and not an activity. GO:0032395|GO:0032394|GO:0042605 True molecular_function owl:Class GO:0019942 biolink:NamedThing obsolete NEDD8 class-dependent protein catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to the target protein. tmpzr1t_l9r_go_relaxed.owl NEDD8 class-dependent protein catabolism|RUB1-dependent protein degradation|NEDD8 class-dependent protein degradation|RUB1-dependent protein catabolism|NEDD8 class-dependent protein catabolic process|RUB1-dependent protein catabolic process|NEDD8 class-dependent protein breakdown This term was made obsolete because NEDD8-class tags do not target proteins for proteolytic destruction. GO:0045116 True biological_process owl:Class GO:0090621 biolink:NamedThing obsolete APC-fizzy-related complex OBSOLETE. An anaphase promoting complex bound to the fizzy-related family APC activator FZR1/Cdh1/Srw1 that regulates mitotic exit by activating the APC/C to target mitotic cyclins for destruction during anaphase and telophase. Is also active during G1. tmpzr1t_l9r_go_relaxed.owl APC-Hct1/Cdh1 complex|APC-Srw1 complex This term was made obsolete because it is too fine-grained for GO. GO:0005680 tb 2014-12-17T17:01:38Z True cellular_component owl:Class GO:0004626 biolink:NamedThing obsolete cytosolic phospholipase A2 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl cytosolic phospholipase A2 activity This term was made obsolete because it represents component and function information. GO:0004623|GO:0005829 True molecular_function owl:Class GO:0005505 biolink:NamedThing obsolete heavy metal binding OBSOLETE. Interacting selectively with a heavy metal, a metal that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. tmpzr1t_l9r_go_relaxed.owl heavy metal binding This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0046872 True molecular_function owl:Class GO:0052233 biolink:NamedThing obsolete positive aerotaxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive aerotaxis in other organism during symbiotic interaction|positive aerotaxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1905713 biolink:NamedThing obsolete mitochondrial calcium uptake involved in regulation of presynaptic cytosolic calcium ion concentration OBSOLETE. Any mitochondrial calcium uptake that is involved in regulation of presynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl calcium ion transmembrane import into mitochondrion involved in regulation of presynaptic cytosolic calcium ion concentration|mitochondrial calcium uptake involved in regulation of presynaptic cytosolic calcium levels|calcium ion transmembrane import into mitochondrion involved in regulation of presynaptic cytosolic calcium levels This term was obsoleted at the TermGenie Gatekeeper stage. dos 2016-11-23T15:55:53Z True biological_process owl:Class GO:1902717 biolink:NamedThing obsolete sequestering of iron ion OBSOLETE. Any process that modulates the frequency, rate or extent of sequestering of iron ion. tmpzr1t_l9r_go_relaxed.owl sequestering of iron ion This term was obsoleted at the TermGenie Gatekeeper stage. mr 2014-02-24T16:08:43Z True biological_process owl:Class GO:1905196 biolink:NamedThing obsolete positive regulation of ATPase activity, uncoupled OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATPase activity, uncoupled. tmpzr1t_l9r_go_relaxed.owl positive regulation of adenylpyrophosphatase activity|activation of adenylpyrophosphatase activity|upregulation of ATPase activity, uncoupled|up regulation of ATPase activity, uncoupled|activation of ATPase activity, uncoupled|upregulation of adenylpyrophosphatase activity|up-regulation of adenylpyrophosphatase activity|up regulation of adenylpyrophosphatase activity|up-regulation of ATPase activity, uncoupled The reason for obsoletion is that the there is no convincing example of a protein with this function. al 2016-05-12T08:01:28Z True biological_process owl:Class GO:0003807 biolink:NamedThing obsolete plasma kallikrein activity OBSOLETE. Catalysis of the selective cleavage of Arg-Xaa and Lys-Xaa bonds, including Lys-Arg and Arg-Ser bonds in (human) kininogen to release bradykinin. tmpzr1t_l9r_go_relaxed.owl dilminal D|glumorin|kallikrein|kallikrein II|panceatic kallikrein|depot-padutin|kininogenin activity|kininogenase|padutin|plasma kallikrein activity|urinary kallikrein|kallikrein I|callicrein|kallidinogenase|onokrein P|serum kallikrein activity|urokallikrein|padreatin GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0000201 biolink:NamedThing obsolete MAPK import into nucleus involved in cell wall organization or biogenesis OBSOLETE. The directed movement of a MAP kinase to the nucleus that occurs in the context of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl cell wall biogenesis, MAPK import into nucleus|nuclear translocation of MAPK involved in cell wall integrity|cell wall biogenesis, nuclear translocation of MAPK|MAPK import into nucleus involved in cell wall integrity|nuclear translocation of MAPK involved in cell wall biogenesis|MAPK import into nucleus involved in cell wall biogenesis The reason for obsoletion is that this term represents a GO-CAM model. GO:0006606 True biological_process owl:Class GO:0075172 biolink:NamedThing obsolete positive regulation of MAP kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its MAP kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont MAP kinase-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0019066 biolink:NamedThing obsolete translocation of virus into host cell OBSOLETE. The translocation of an entire virus particle across the host cell plasma membrane. tmpzr1t_l9r_go_relaxed.owl translocation of virus into host cell|viral translocation GO:0046718 This term was made obsolete because it is ambiguous, and more specific terms have been created. True biological_process owl:Class GO:0090236 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in somitogenesis OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0001756|GO:0006357 tb 2010-01-20T11:12:29Z True biological_process owl:Class GO:0052180 biolink:NamedThing obsolete negative regulation of peptidase activity in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of protease activity, the catalysis of the hydrolysis of peptide bonds in a protein, in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation of protease activity in other organism during symbiotic interaction|negative regulation of protease activity in other organism during symbiotic interaction|down-regulation of protease activity in other organism during symbiotic interaction|inhibition of protease activity in other organism during symbiotic interaction|down regulation of protease activity in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0000990 biolink:NamedThing obsolete transcription factor activity, core RNA polymerase binding OBSOLETE. Binding to an RNA polymerase in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl core RNA polymerase binding transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0140110|GO:0043175 krc 2010-08-10T05:01:03Z True molecular_function owl:Class GO:0090286 biolink:NamedThing obsolete cytoskeletal anchoring at nuclear membrane OBSOLETE. The process in which cytoskeletal filaments are directly or indirectly linked to the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18283 This term was obsoleted because it represented a molecular function. GO:0140444 tb 2010-02-18T02:56:26Z True biological_process owl:Class GO:0044408 biolink:NamedThing obsolete growth or development of symbiont on or near host OBSOLETE. Any process in which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont on or near host|growth or development of organism on or near host surface True biological_process owl:Class GO:0007106 biolink:NamedThing obsolete cytokinesis, protein recruitment OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytokinesis, protein recruitment This term was made obsolete because it was not defined. True biological_process owl:Class GO:1990645 biolink:NamedThing obsolete phosphorylase dephosphorylation OBSOLETE. The modification of phosphorylases by removal of phosphate groups. tmpzr1t_l9r_go_relaxed.owl phosphorylase dephosphorylation This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-02-18T16:39:50Z True biological_process owl:Class GO:0018332 biolink:NamedThing obsolete enzyme active site formation via O-(phospho-5'-adenosine)-L-threonine OBSOLETE. The transient adenylylation of threonine to form N6-(phospho-5'-adenosine)-L-threonine, found in the active site of bovine phosphodiesterase I. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0267 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:19039103 and PMID:19503829. True biological_process owl:Class GO:0090046 biolink:NamedThing obsolete regulation of transcription regulator activity OBSOLETE. Any process that modulates the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. tmpzr1t_l9r_go_relaxed.owl regulation of transcription regulator activity At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term. tb 2009-08-07T10:19:57Z True biological_process owl:Class GO:0052182 biolink:NamedThing obsolete modification by host of symbiont morphology or physiology via secreted substance OBSOLETE. The process in which an organism effects a change in the structure or function of a symbiont organism, mediated by a substance secreted by one of the organisms. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0051074 biolink:NamedThing obsolete protein tetramerization activity OBSOLETE. The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits. tmpzr1t_l9r_go_relaxed.owl protein tetramerization activity GO:0051262 This term was made obsolete because it represents a process. True molecular_function owl:Class GO:0046018 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase I promoter during mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase I promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl activation of transcription from RNA polymerase I promoter during mitosis|upregulation of transcription from RNA polymerase I promoter during mitosis|positive regulation of transcription from Pol I promoter during mitosis|stimulation of transcription from RNA polymerase I promoter during mitosis|mitotic activation of transcription from Pol I promoter|up-regulation of transcription from RNA polymerase I promoter during mitosis|positive regulation of transcription from RNA polymerase I promoter, mitotic|up regulation of transcription from RNA polymerase I promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0045943 True biological_process owl:Class GO:0004086 biolink:NamedThing obsolete carbamoyl-phosphate synthase activity OBSOLETE. Catalysis of a reaction that results in the formation of carbamoyl phosphate. tmpzr1t_l9r_go_relaxed.owl carbamoyl phosphate synthase activity|carbamoyl-phosphate synthase activity This term was made obsolete because it is a grouping term based on name, rather than on function. GO:0004087|GO:0004088 True molecular_function owl:Class GO:0005311 biolink:NamedThing obsolete sodium:dicarboxylate/tricarboxylate symporter activity OBSOLETE. Catalysis of the reaction: (dicarboxylate or tricarboxylate)(out) + Na+(out) = (dicarboxylate or tricarboxylate)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl sodium:dicarboxylate/tricarboxylate symporter activity|sodium:dicarboxylate/tricarboxylate cotransporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0005310|GO:0005343|GO:0015142 True molecular_function owl:Class GO:0100031 biolink:NamedThing obsolete regulation of histone methylation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone methylation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0044120 biolink:NamedThing obsolete development of symbiont in host vacuole OBSOLETE. The progression of the symbiont from an initial condition to a later condition, occurring in a host vacuole. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl development of symbiont in host organelle https://github.com/geneontology/go-ontology/issues/20305 This term was obsoleted because it represents both a process and a location. jl 2009-07-30T03:59:54Z True biological_process owl:Class GO:0003694 biolink:NamedThing obsolete plasmid binding OBSOLETE. Interacting selectively with a plasmid, an extrachromosomal genetic element usually characterized as a covalently continuous double stranded DNA molecule found in bacteria and some other microorganisms. tmpzr1t_l9r_go_relaxed.owl plasmid-associated protein|plasmid binding This term was made obsolete because it refers to component information. GO:0005727|GO:0003677 True molecular_function owl:Class GO:0003686 biolink:NamedThing obsolete DNA repair enzyme OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA repair enzyme This term was made obsolete because it includes a process term. GO:0003684 True molecular_function owl:Class GO:0019831 biolink:NamedThing obsolete chromate sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chromate sensitivity/resistance GO:0046687 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0035959 biolink:NamedThing obsolete positive regulation of glyoxylate cycle by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of the glyoxylate cycle by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of glyoxylate bypass by upregulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate cycle by up-regulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate cycle by positive regulation of transcription from Pol II promoter|positive regulation of glyoxylate cycle by upregulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate cycle by activation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate cycle by stimulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate bypass by positive regulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate bypass by up regulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate cycle by up regulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate bypass by up-regulation of transcription from RNA polymerase II promoter|positive regulation of glyoxylate bypass by positive regulation of transcription from Pol II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:1901171 biolink:NamedThing obsolete naphthalene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of naphthalene. tmpzr1t_l9r_go_relaxed.owl naphthalene formation|naphthalene biosynthesis|naphthalene anabolism|naphthalene synthesis https://github.com/geneontology/go-ontology/issues/20974 This term was obsoleted because there is no evidence that this process exists. yaf 2012-07-19T09:34:11Z True biological_process owl:Class GO:0045042 biolink:NamedThing obsolete protein import into mitochondrial intermembrane space, conservative OBSOLETE. The conservative import of proteins into the mitochondrial intermembrane space. The entire protein enters the matrix, and then the second targeting sequence directs the protein, presumably bound to a matrix protein, across the inner membrane to the intermembrane space. tmpzr1t_l9r_go_relaxed.owl conservative protein transport into mitochondrial intermembrane space|protein import into mitochondrial IMS, conservative|protein transport into mitochondrial IMS, conservative|conservative mitochondrial intermembrane space protein import|protein transport into mitochondrial intermembrane space, conservative|conservative mitochondrial IMS protein import|protein import into mitochondrial intermembrane space, conservative|conservative protein transport into mitochondrial IMS This term was made obsolete because there is no 'conservative' process of protein import into the mitochondrial intermembrane space that is distinct from the more general parent; furthermore, 'conservative' is used in the literature to describe a pathway of import into the inner membrane rather than into the intermembrane space. GO:0045039|GO:0045041 True biological_process owl:Class GO:0009919 biolink:NamedThing obsolete cytokinesis (sensu Viridiplantae) OBSOLETE. The division of a cell into two daughter cells with cell walls. tmpzr1t_l9r_go_relaxed.owl cytokinesis (sensu Viridiplantae) This term was made obsolete because its meaning was changed significantly. GO:0000911 True biological_process owl:Class GO:0016484 biolink:NamedThing obsolete proprotein convertase 2 activator activity OBSOLETE. Required for the maturation and activation of proprotein convertase 2. tmpzr1t_l9r_go_relaxed.owl proprotein convertase 2 activator activity This term was made obsolete because it represents a regulator of an obsolete molecular function. GO:0016504 True molecular_function owl:Class GO:2000500 biolink:NamedThing obsolete positive regulation of induction of apoptosis in response to chemical stimulus OBSOLETE. Any process that activates or increases the frequency, rate or extent of induction of apoptosis in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of induction of apoptosis in response to chemical stimulus|positive regulation of induction of apoptosis in response to chemical substance This term was made obsolete because it is ill-defined. yaf 2011-03-18T02:36:22Z True biological_process owl:Class GO:0015406 biolink:NamedThing obsolete ABC-type uptake permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ABC-type uptake permease activity This term was made obsolete because ABC transporters are a protein family rather than a functional grouping. GO:0043190|GO:0042626 True molecular_function owl:Class GOREL:0000040 biolink:NamedThing results_in tmpzr1t_l9r_go_relaxed.owl GOREL:0000040 This relation is currently used to connect two regulation processes p1 and p2, such that if r1 regulates p1 and r2 regulates p2, and r1 results_in r2 then the regulation of p1 is required for the regulation of p2. For an example of use, see GO:0035958 'regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter'. Note that a precise definition of this relation is under discussion. After it has been formalized it will be added to RO, where it will have a RO ID. Note that the existing identifier and label are subject to change. cjm 2012-03-14T10:35:44Z external results_in GO:0003821 biolink:NamedThing obsolete class II major histocompatibility complex antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class II major histocompatibility complex antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. GO:0042613 True molecular_function owl:Class GO:0000216 biolink:NamedThing obsolete M/G1 transition of mitotic cell cycle OBSOLETE. Progression from M phase to G1 phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl M/G1 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. True biological_process owl:Class GO:0031557 biolink:NamedThing obsolete induction of programmed cell death in response to chemical stimulus OBSOLETE. A process which directly activates any of the steps required for programmed cell death as a result of a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl induction of programmed cell death in response to chemical stimulus|induction of programmed cell death in response to chemical substance This term was made obsolete because it is now superseded by better defined and more specific terms under the node of GO:0012501 programmed cell death. True biological_process owl:Class GO:0051857 biolink:NamedThing obsolete growth or development of organism on or near symbiont surface OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of organism during interaction with symbiont|growth or development of organism on or near symbiont surface GO:0032502 True biological_process owl:Class GO:1900478 biolink:NamedThing obsolete positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of sulfate assimilation by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl up-regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|activation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter|activation of sulphate assimilation by positive regulation of transcription from RNA polymerase II promoter|up regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter|up regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|upregulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter|up-regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter|up regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|up-regulation of sulphate assimilation by positive regulation of transcription from RNA polymerase II promoter|up-regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|positive regulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|activation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|upregulation of sulphate assimilation by positive regulation of transcription from RNA polymerase II promoter|upregulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|positive regulation of sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|positive regulation of sulphate assimilation by positive regulation of transcription from RNA polymerase II promoter|activation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|upregulation of sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor by positive regulation of transcription from RNA polymerase II promoter|up regulation of sulphate assimilation by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T09:08:04Z True biological_process owl:Class GO:0046229 biolink:NamedThing obsolete 2-aminobenzenesulfonate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-aminobenzenesulfonate, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines. tmpzr1t_l9r_go_relaxed.owl 2-aminobenzenesulfonate synthesis|2-aminobenzenesulfonate biosynthesis|2-aminobenzenesulfonate formation|2-aminobenzenesulphonate biosynthesis|2-aminobenzenesulfonate anabolism|2-aminobenzenesulphonate biosynthetic process|2-aminobenzenesulfonate biosynthetic process GO:0018868 This term was made obsolete because 2-aminobenzenesulfonate is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0000367 biolink:NamedThing obsolete second U12-type spliceosomal transesterification activity OBSOLETE. Catalysis of the second transesterification reaction of U12-type spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure. The catalytic site is thought to be formed by U6 and/or U2 snRNAs and/or associated proteins. tmpzr1t_l9r_go_relaxed.owl second U12-type spliceosomal transesterification activity|3'-splice site cleavage, exon ligation GO:0000386 This term was made obsolete because the activities used in the U2- and U12-type complexes are the same. The cellular component ontology should (and does) represent the two different complexes, but the molecular function ontology should not. True molecular_function owl:Class GO:0005190 biolink:NamedThing obsolete seminal fluid protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl seminal fluid protein This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:1901312 biolink:NamedThing obsolete negative regulation of gene expression involved in extracellular matrix organization OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of gene expression involved in extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl down regulation of expression of extracellular matrix proteins|downregulation of extracellular matrix protein production|down regulation of extracellular matrix protein production|inhibition of gene expression involved in extracellular matrix organization|inhibition of extracellular matrix protein production|down-regulation of extracellular matrix protein production|down regulation of gene expression involved in extracellular matrix organization|downregulation of expression of extracellular matrix proteins|down-regulation of expression of extracellular matrix proteins|inhibition of expression of extracellular matrix proteins|down-regulation of gene expression involved in extracellular matrix organization|negative regulation of expression of extracellular matrix proteins|downregulation of gene expression involved in extracellular matrix organization|negative regulation of extracellular matrix protein production This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization. GO:0010629 vk 2012-08-22T09:18:35Z True biological_process owl:Class GO:0010153 biolink:NamedThing obsolete polar cell elongation OBSOLETE. Cell expansion that results in an increase in cell size along the axis of an organ in a polarized fashion. tmpzr1t_l9r_go_relaxed.owl polar cell elongation|polarity-dependent cell elongation This term was made obsolete because it did not represent a process discrete from its sibling terms. GO:0042815|GO:0042814 True biological_process owl:Class GO:0052054 biolink:NamedThing obsolete negative regulation by symbiont of host peptidase activity OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of host protease activity, the catalysis of the hydrolysis of peptide bonds in a protein. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl down regulation by symbiont of host protease activity|negative regulation by symbiont of host protease activity|down-regulation by symbiont of host protease activity|inhibition by symbiont of host protease activity|downregulation by symbiont of host protease activity|inhibition of host protease activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0031375 biolink:NamedThing obsolete type II fatty acid synthase complex OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity. tmpzr1t_l9r_go_relaxed.owl type II fatty acid synthase|type II fatty acid synthase complex|type II FAS|type II FAS complex Type II refers to the type of fatty acid synthase. Type I is in a complex, type II is not. True cellular_component owl:Class GO:0052141 biolink:NamedThing obsolete positive chemotaxis on or near host OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1901372 biolink:NamedThing obsolete trehalose biosynthetic process involved in ascospore formation OBSOLETE. Any trehalose biosynthetic process that is involved in ascospore formation. tmpzr1t_l9r_go_relaxed.owl trehalose anabolism involved in ascospore biosynthesis|mycose biosynthesis involved in ascospore formation|trehalose synthesis involved in ascospore formation|trehalose formation involved in ascospore formation|mykose biosynthesis involved in ascospore formation|trehalose biosynthetic process involved in ascospore biosynthesis|trehalose biosynthesis involved in ascospore formation|mycose biosynthetic process involved in ascospore formation|mykose biosynthetic process involved in ascospore biosynthesis|mycose biosynthesis involved in ascospore biosynthesis|trehalose anabolism involved in ascospore formation|trehalose formation involved in ascospore biosynthesis|mycose biosynthetic process involved in ascospore biosynthesis|trehalose synthesis involved in ascospore biosynthesis|mykose biosynthetic process involved in ascospore formation|trehalose biosynthesis involved in ascospore biosynthesis|mykose biosynthesis involved in ascospore biosynthesis https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. al 2012-09-25T11:06:48Z True biological_process owl:Class GO:0016284 biolink:NamedThing obsolete alanine aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, preferentially alanine, from an oligopeptide or polypeptide. tmpzr1t_l9r_go_relaxed.owl alanine aminopeptidase activity EC:3.4.11.- This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined. GO:0008235|GO:0004177 True molecular_function owl:Class GO:0018183 biolink:NamedThing obsolete enzyme active site formation via S-selenyl-L-cysteine OBSOLETE. The transient selenylation of peptidyl-cysteine to form S-selenyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via S-selenyl-L-cysteine This term was made obsolete because this structure does not exist. True biological_process owl:Class GO:0034649 biolink:NamedThing obsolete histone demethylase activity (H3-monomethyl-K4 specific) OBSOLETE. Catalysis of the removal of a methyl group from monomethylated lysine at position 4 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone demethylase activity (H3-K4-me1 specific) https://github.com/geneontology/go-ontology/issues/21089 This term was obsoleted to align with RHEA and EC: this is a sub-reaction both in RHEA:60208 and EC:1.14.11.67. GO:0034647|GO:0140682 True molecular_function owl:Class GO:0036208 biolink:NamedThing obsolete negative regulation of histone gene expression OBSOLETE. Any process that decreases the frequency, rate or extent of expression of a histone-encoding gene. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. tmpzr1t_l9r_go_relaxed.owl negative regulation of expression of histone-encoding gene|downregulation of histone gene expression|down-regulation of histone gene expression|inhibition of histone gene expression https://github.com/geneontology/go-ontology/issues/20209 This term was obsoleted because the gene product should be captured as an annotation extension using 'has input'. GO:0000122 bf 2012-04-25T09:29:43Z True biological_process owl:Class GO:0033665 biolink:NamedThing obsolete regulation of growth or development of symbiont in host OBSOLETE. Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of growth or development of symbiont within host|regulation of growth or development of symbiont in host|modulation of invasive growth|modulation of growth or development of organism within host|modulation of growth or development of symbiont within host This term was made obsolete because it contained a conjunction (or). GO:0044127 True biological_process owl:Class GO:0019562 biolink:NamedThing obsolete L-phenylalanine catabolic process to phosphoenolpyruvate OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-phenylalanine into other compounds, including phosphoenolpyruvate. tmpzr1t_l9r_go_relaxed.owl phenylalanine breakdown to phosphoenolpyruvate|phenylalanine degradation to phosphoenolpyruvate MetaCyc:PHENYLALANINE-DEG1-PWY The reason for obsoletion is that there is no evidence that this is a real process. True biological_process owl:Class GO:0036083 biolink:NamedThing obsolete positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of unsaturated fatty acid biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. bf 2011-12-20T04:52:36Z True biological_process owl:Class GO:0008075 biolink:NamedThing obsolete receptor guanylate cyclase activity OBSOLETE. Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate. tmpzr1t_l9r_go_relaxed.owl receptor guanylate cyclase activity This term was made obsolete because it represents a class of gene products. GO:0004383|GO:0038023 True molecular_function owl:Class GO:0006926 biolink:NamedThing obsolete virus-infected cell apoptotic process OBSOLETE. Any apoptotic process in a cell infected with a virus. tmpzr1t_l9r_go_relaxed.owl killing virus-infected cells|virus-infected cell apoptotic process|programmed cell death of virus-infected cells by apoptosis|virus-infected cell programmed cell death by apoptosis|virus-infected cell apoptosis|apoptosis of virus-infected cells|programmed cell death, virus-infected cells This term was made obsolete because the meaning of the term is ambiguous, as it's possibly conflating at least two scenarios: 1) the organism apoptoses its own cell because it detects it is infected with a virus; 2) the virus induces apoptosis so the cell is lysed and the virus disseminated. Please consider using viral process terms to annotate viral proteins. As for the cellular apoptotic process, this likely occurs via the same mechanisms described by existing apoptotic process terms, so please consider using those to annotate cellular proteins. True biological_process owl:Class GO:0016566 biolink:NamedThing obsolete specific transcriptional repressor activity OBSOLETE. Any activity that stops or downregulates transcription of specific genes or sets of genes. tmpzr1t_l9r_go_relaxed.owl specific transcriptional repressor activity This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0001227|GO:0045892|GO:0001217 True molecular_function owl:Class GO:0006292 biolink:NamedThing obsolete pyrimidine-dimer repair, DNA damage recognition OBSOLETE. The location of pyrimidine dimers by a large multienzyme complex that scans the DNA for distortions in the double helix caused by pyrimidine dimers. tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair, DNA damage recognition This term was made obsolete because it is a substrate specific DNA repair process. GO:0000715|GO:0000716 True biological_process owl:Class GO:1905549 biolink:NamedThing obsolete positive regulation of subtelomeric heterochromatin assembly OBSOLETE. Any process that activates or increases the frequency, rate or extent of subtelomeric heterochromatin assembly. tmpzr1t_l9r_go_relaxed.owl up regulation of telomeric heterochromatin formation|up-regulation of telomeric heterochromatin formation|positive regulation of telomeric heterochromatin assembly|activation of telomeric heterochromatin formation|positive regulation of telomeric heterochromatin formation|up-regulation of telomeric heterochromatin assembly|upregulation of telomeric heterochromatin formation|up regulation of telomeric heterochromatin assembly|upregulation of telomeric heterochromatin assembly|activation of telomeric heterochromatin assembly https://github.com/geneontology/go-ontology/issues/22027|https://github.com/geneontology/go-ontology/issues/19188 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. nc 2016-10-12T11:18:30Z True biological_process owl:Class GO:0016910 biolink:NamedThing obsolete SAP kinase 3 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl SAP kinase 3 activity|SAPK3 This term was made obsolete because it describes a gene product. GO:0004674|GO:0007254 True molecular_function owl:Class GO:0006100 biolink:NamedThing obsolete tricarboxylic acid cycle intermediate metabolic process OBSOLETE. The chemical reactions and pathways involving intermediates of the tricarboxylic acid cycle. tmpzr1t_l9r_go_relaxed.owl TCA intermediate metabolism|citric acid cycle intermediate metabolism|tricarboxylic acid cycle intermediate metabolic process|citric acid cycle intermediate metabolic process|Krebs cycle intermediate metabolism|Krebs cycle intermediate metabolic process|TCA intermediate metabolic process|tricarboxylic acid cycle intermediate metabolism This term was made obsolete because it is a grouping term that is not useful, but has caused true path violations. GO:0006108|GO:0006104|GO:0006103|GO:0006106|GO:0006101|GO:0006107|GO:0006099|GO:0006105 True biological_process owl:Class GO:0003103 biolink:NamedThing obsolete positive regulation of diuresis OBSOLETE. Any process that activates or increases the frequency, rate or extent of diuresis. Diuresis is the process of renal water excretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of diuresis This term was made obsolete because its definition was inaccurate. GO:0035810 True biological_process owl:Class GO:0033264 biolink:NamedThing obsolete bontoxilysin activity OBSOLETE. Catalysis of limited hydrolysis of proteins of the neuroexocytosis apparatus, synaptobrevins, SNAP25 or syntaxin. No detected action on small molecule substrates. tmpzr1t_l9r_go_relaxed.owl BoNT|bontoxilysin activity|botulinum neurotoxin activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005211 biolink:NamedThing obsolete plasma glycoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl plasma glycoprotein This term was made obsolete because it describes modification and presence in body fluids rather than an activity. True molecular_function owl:Class GO:0015524 biolink:NamedThing obsolete L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity OBSOLETE. Catalysis of the reaction: H+(out) + (L-arabinose or beta-D-thiogalactopyranoside)(in) = H+(in) + (L-arabinose or beta-D-thiogalactopyranoside)(out). tmpzr1t_l9r_go_relaxed.owl L-arabinose/beta-D-thiogalactopyranoside:proton antiporter activity|L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity This term was made obsolete because it represents a gene product rather than a single discrete molecular function. GO:0015147|GO:0015299|GO:0051119 True molecular_function owl:Class GO:0018333 biolink:NamedThing obsolete enzyme active site formation via O-phospho-L-threonine OBSOLETE. The transient phosphorylation of peptidyl-threonine to form O-phospho-L-threonine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0038 This term was obsoleted because it was created by error: tyrosine phosphorylation does not generate an active site. True biological_process owl:Class GO:0045139 biolink:NamedThing obsolete copper sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl copper sensitivity/resistance GO:0046688 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:1900538 biolink:NamedThing obsolete positive regulation of glucose homeostasis OBSOLETE. Any process that activates or increases the frequency, rate or extent of glucose homeostasis. tmpzr1t_l9r_go_relaxed.owl up-regulation of glucose homeostasis|up regulation of glucose homeostasis|positive regulation of glucose homeostasis|activation of glucose homeostasis|upregulation of glucose homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. hjd 2012-05-10T06:53:38Z True biological_process owl:Class GO:0045562 biolink:NamedThing obsolete regulation of TRAIL receptor 2 biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 2. tmpzr1t_l9r_go_relaxed.owl regulation of TRAIL receptor 2 biosynthesis|regulation of TRAIL receptor 2 synthesis|regulation of TRAIL receptor 2 anabolism|regulation of TRAIL receptor 2 formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0004209 biolink:NamedThing obsolete caspase-6 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-6 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0016164 biolink:NamedThing obsolete Mo-molybdopterin oxidoreductase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl molybdopterin oxidoreductase activity|Mo-molybdopterin oxidoreductase activity GO:0016491 This term was made obsolete because the differentia from the parent is a gene product feature (specifically, the presence of a molybdopterin cofactor in the protein). It has also never been defined. True molecular_function owl:Class GO:0019893 biolink:NamedThing obsolete DNA replication inhibitor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA replication inhibitor GO:0008156 This term was made obsolete because it does not represent a true molecular function. True molecular_function owl:Class GO:0005079 biolink:NamedThing obsolete protein kinase A anchoring activity OBSOLETE. Binds to protein kinase A and anchors it to a particular subcellular location. tmpzr1t_l9r_go_relaxed.owl AKAP activity|protein kinase A anchoring activity|A-kinase anchor protein activity This term was made obsolete because it represents a combination of process and function information. GO:0051018|GO:0008104 True molecular_function owl:Class GO:0016088 biolink:NamedThing obsolete insulin OBSOLETE. A polypeptide hormone that stimulates glucose uptake by muscle and adipose tissue, and promotes glycogenesis, lipogenesis and the synthesis of proteins and nucleic acids. tmpzr1t_l9r_go_relaxed.owl insulin This term was made obsolete because it represents a gene product. GO:0046326|GO:0045722|GO:0045935|GO:0045727|GO:0046889|GO:0005102 True molecular_function owl:Class GO:1900031 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in calcium-mediated signaling. tmpzr1t_l9r_go_relaxed.owl regulation of gene-specific transcription from RNA polymerase II promoter of calcium ion signaling|regulation of transcription from Pol II promoter of calcium signalling|global transcription regulation from Pol II promoter of calcium-mediated signaling|global transcription regulation from Pol II promoter of calcium ion signaling|global transcription regulation from Pol II promoter of calcium-mediated signalling|regulation of transcription from Pol II promoter of calcium signaling|regulation of transcription from RNA polymerase II promoter of calcium signalling|regulation of gene-specific transcription from RNA polymerase II promoter of calcium signalling|regulation of transcription from Pol II promoter of calcium-mediated signaling|regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signaling|regulation of transcription from RNA polymerase II promoter, global of calcium signaling|regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling|regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling|regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling|regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signalling|regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signaling|regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signalling|regulation of global transcription from Pol II promoter of calcium signaling|regulation of transcription from RNA polymerase II promoter, global of calcium signalling|regulation of transcription from Pol II promoter of calcium-mediated signalling|regulation of transcription from RNA polymerase II promoter, global of calcium ion signaling|regulation of global transcription from Pol II promoter of calcium ion signaling|global transcription regulation from Pol II promoter of calcium signaling|global transcription regulation from Pol II promoter of calcium signalling|regulation of transcription from RNA polymerase II promoter of calcium ion signaling|regulation of global transcription from Pol II promoter of calcium-mediated signaling|regulation of gene-specific transcription from RNA polymerase II promoter of calcium signaling|regulation of transcription from Pol II promoter of calcium ion signaling|regulation of global transcription from Pol II promoter of calcium signalling|regulation of transcription from RNA polymerase II promoter of calcium signaling|regulation of global transcription from Pol II promoter of calcium-mediated signalling GO:0019722|GO:0006357 krc 2012-01-13T04:09:19Z True biological_process owl:Class GO:0000072 biolink:NamedThing obsolete M phase specific microtubule process OBSOLETE. A microtubule-based process that occurs only during M phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl M-phase specific microtubule process|M phase specific microtubule process This term was made obsolete because terms already exist for centrosome/spindle organization which would be more suitable for the existing annotations, and the phase could be captured as an annotation extension if necessary. GO:0007017 True biological_process owl:Class GO:0009335 biolink:NamedThing obsolete holo-[acyl-carrier protein] synthase complex OBSOLETE. An enzyme complex that catalyzes the formation of holo-[acyl-carrier protein] from CoA and apo-[acyl-carrier protein]. tmpzr1t_l9r_go_relaxed.owl holo-ACP synthase complex|holo-[acyl-carrier protein] synthase complex This term was made obsolete because the catalytic activity resides in a single polypeptide rather than a complex, and the complex is represented by a different GO term. GO:0005835 True cellular_component owl:Class GO:1903759 biolink:NamedThing obsolete signal transduction involved in regulation of aerobic respiration OBSOLETE. Any signal transduction that is involved in regulation of aerobic respiration. tmpzr1t_l9r_go_relaxed.owl signaling cascade involved in regulation of aerobic respiration|signalling cascade involved in regulation of aerobic respiration|signaling pathway involved in regulation of aerobic respiration|signalling pathway involved in regulation of aerobic respiration The reason for obsoletion is that this represents a GO-CAM model. al 2014-12-18T16:37:50Z True biological_process owl:Class GO:0016252 biolink:NamedThing obsolete nonspecific RNA polymerase II transcription factor activity OBSOLETE. Any function that supports transcription of genes by RNA polymerase II, and is not specific to a particular gene or gene set. tmpzr1t_l9r_go_relaxed.owl nonspecific RNA polymerase II transcription factor activity This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0016251|GO:0006366 True molecular_function owl:Class GO:0052426 biolink:NamedThing obsolete modification by organism of symbiont morphology or physiology via substance secreted by type IV secretion system OBSOLETE. The process by which an organism effects a change in the structure or function of its symbiont organism, mediated by a substance secreted by a type IV secretion system in the organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of symbiont morphology or physiology via substance secreted by type IV secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0016351 biolink:NamedThing obsolete drug susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl drug susceptibility/resistance GO:0009410 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0008370 biolink:NamedThing obsolete cellular component OBSOLETE. These are terms that have been removed from the active component ontology. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is unnecessary in the OBO flat file format. True cellular_component owl:Class GO:0003931 biolink:NamedThing obsolete Rho small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. Any member of the Rho subfamily of the RAS superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton. tmpzr1t_l9r_go_relaxed.owl Rho small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0007010 True molecular_function owl:Class GO:0071876 biolink:NamedThing obsolete initiation of adrenergic receptor signal transduction OBSOLETE. A process of signal initiation in which epinephrine or norepinephrine causes activation of an adrenergic receptor. tmpzr1t_l9r_go_relaxed.owl initiation of adrenergic receptor signal transduction This term was made obsolete because the meaning of the term is ambiguous. GO:0071872|GO:0005179|GO:0004935|GO:0071874|GO:0071875 mah 2010-09-13T04:05:38Z True biological_process owl:Class GO:1990952 biolink:NamedThing obsolete manchette disassembly OBSOLETE. A cellular process that results in the breakdown of a manchette. tmpzr1t_l9r_go_relaxed.owl manchette clearance This term was obsoleted at the TermGenie Gatekeeper stage. krc 2016-05-11T00:14:16Z True biological_process owl:Class GO:0045193 biolink:NamedThing obsolete acetylated low-density lipoprotein catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of acetylated low-density lipoproteins. tmpzr1t_l9r_go_relaxed.owl Ac-LDL catabolic process|acetylated low-density lipoprotein catabolic process|acetylated low-density lipoprotein catabolism|acetylated low-density lipoprotein degradation|Ac-LDL catabolism|acetylated low-density lipoprotein breakdown This term was made obsolete because low-density lipoprotein is a macromolecular complex, not a single class of molecule; its degradation involves the dissociation of non-covalently attached constituents as well as some breaking and reforming of covalent bonds. True biological_process owl:Class GO:0001089 biolink:NamedThing obsolete transcription factor activity, TFIIF-class transcription factor binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIF class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIIF-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. GO:0001096 krc 2010-10-28T02:27:12Z True molecular_function owl:Class imports biolink:NamedThing imports tmpzr1t_l9r_go_relaxed.owl RO:0002340 external imports GO:0030457 biolink:NamedThing obsolete activation of MAPKK (mating sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPKK (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0043460 biolink:NamedThing obsolete response to long exposure to lithium ion OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a long or persistent exposure to a lithium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to long exposure to lithium ion This term was made obsolete because 'long' is not a quantitative or meaningful measurement of time. True biological_process owl:Class GO:0006698 biolink:NamedThing obsolete ecdysone modification OBSOLETE. The covalent or conformational alteration of ecdysone, resulting in a change in its properties. tmpzr1t_l9r_go_relaxed.owl ecdysone modification GO:0004501 This term was made obsolete because it was created to cover the conversion of ecdysone to its active form ecdysterone (20-hydroxyecdysone), but this reaction is carried out in a single step by ecdysone 20-monooxygenase (EC:1.14.99.22) and so is a function rather than a process. True biological_process owl:Class GO:0005189 biolink:NamedThing obsolete milk protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl milk protein This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:1900473 biolink:NamedThing obsolete negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of phosphatidylcholine biosynthetic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of phosphatidylcholine anabolism by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylcholine biosynthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylcholine formation by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylcholine synthesis by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T08:13:51Z True biological_process owl:Class GO:0052479 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont ethylene-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway|suppression by organism of defense-related symbiont ethylene-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0072466 biolink:NamedThing obsolete detection of stimulus involved in cell shape checkpoint OBSOLETE. The series of events in which information about aspects of cell polarity control is received and converted into a molecular signal, contributing to a cell shape checkpoint. tmpzr1t_l9r_go_relaxed.owl sensing involved in cell shape checkpoint|cell shape checkpoint sensor mechanism|cell shape checkpoint sensor process This term was made obsolete because it was ambiguous. mah 2010-12-09T11:43:58Z True biological_process owl:Class GO:0090072 biolink:NamedThing obsolete positive regulation of sodium ion transport via voltage-gated sodium channel activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of the directed movement of sodium ions via the activity of voltage-gated sodium channels. tmpzr1t_l9r_go_relaxed.owl positive regulation of sodium ion transport via voltage-gated sodium channel activity This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0005248 tb 2009-09-11T10:46:13Z True biological_process owl:Class RO:0012008 biolink:NamedThing results in fusion of tmpzr1t_l9r_go_relaxed.owl RO:0012008 external results_in_fusion_of GO:0015307 biolink:NamedThing obsolete drug:proton antiporter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + drug(in) = H+(in) + drug(out). tmpzr1t_l9r_go_relaxed.owl carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity|drug:hydrogen antiporter activity This term was obsoleted because it is not possible to state that every case of transmembrane transport for a specific chemical constitutes a drug transport. True molecular_function owl:Class GO:0006923 biolink:NamedThing obsolete cleavage of cytoskeletal proteins involved in execution phase of apoptosis OBSOLETE. The proteolytic degradation of cytoskeletal proteins that contributes to apoptosis, leading to the collapse of cytoskeletal structures. tmpzr1t_l9r_go_relaxed.owl cleavage of cytoskeletal proteins involved in apoptosis|cleavage of cytoskeletal proteins involved in execution phase of apoptosis|apoptotic cleavage of cytoskeletal proteins This term was obsoleted because it refers to targets of effector proteins (caspases); the 'cleavage' process referred to in the term name is in fact the same molecular function represented by GO:0097200 'cysteine-type endopeptidase activity involved in execution phase of apoptosis'. GO:0097200 True biological_process owl:Class GO:0001597 biolink:NamedThing obsolete apelin-like receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl apelin-like receptor|APJ-like receptor This term was made obsolete because the function it represents does not exist. GO:0031704 True molecular_function owl:Class GO:0019873 biolink:NamedThing obsolete tellurium sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl tellurium sensitivity/resistance GO:0046690 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0044050 biolink:NamedThing obsolete interaction with host via substance released by sporangium lysis OBSOLETE. An interaction with the host organism mediated by a substance released via rupture of symbiont sporangia, structures producing and containing spores. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host via substance released by sporangia lysis|interaction with host via substance released by lysis of symbiont sporangium This term was obsoleted because it conflates a process and the mechanism of secretion of the gene product mediating the process. True biological_process owl:Class GO:0101008 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter in response to increased salt OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0000122|GO:0071472 mec True biological_process owl:Class GO:0001316 biolink:NamedThing obsolete age-dependent response to reactive oxygen species involved in replicative cell aging OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring during the process of replicative cell aging as a result of reactive oxygen species, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl age-dependent response to AOS during replicative cell aging|age-dependent response to reactive oxygen intermediate during replicative cell aging|age-dependent response to reactive oxygen species during replicative cell aging|age-dependent response to active oxygen species during replicative cell aging|age-dependent response to ROS during replicative cell aging|age-dependent response to reactive oxidative species during replicative cell aging|age-dependent response to reactive oxygen species during replicative cell ageing|age-dependent response to ROI during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0005208 biolink:NamedThing obsolete amyloid protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl amyloid protein This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0009351 biolink:NamedThing obsolete dihydrolipoamide S-acyltransferase complex OBSOLETE. An enzyme complex that catalyzes the transfer of an acyl group from coenzyme A to dihydrolipoamide. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide S-acyltransferase complex This term was made obsolete because dihydrolipoamide S-acyltransferase activity resides in a single polypeptide. True cellular_component owl:Class GO:0001511 biolink:NamedThing obsolete fibrillin OBSOLETE. Large glycoprotein that is a calcium binding component of connective tissue microfibrils containing 34 six-cysteine (EGF-like) repeats and five eight-cysteine (TGFbeta-1 binding protein-like) repeats. Defects associated with Marfan syndrome. tmpzr1t_l9r_go_relaxed.owl fibrillin This term was made obsolete because it represents a gene product. GO:0005509|GO:0001527 True molecular_function owl:Class GO:0003798 biolink:NamedThing obsolete male-specific antibacterial peptide activity OBSOLETE. Inhibits the growth of, or directly kills, bacterial cells, but which is only expressed in males. tmpzr1t_l9r_go_relaxed.owl male-specific antibacterial peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0050831 True molecular_function owl:Class GO:0030092 biolink:NamedThing obsolete regulation of flagellum assembly OBSOLETE. Any process that modulates the frequency, rate or extent of the formation of a flagellum. tmpzr1t_l9r_go_relaxed.owl regulation of flagellum biogenesis|regulation of flagella biogenesis|regulation of flagellum assembly|regulation of flagella assembly This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:1902017|GO:1902208 True biological_process owl:Class GO:0004193 biolink:NamedThing obsolete cathepsin E activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Similar to cathepsin D, but slightly broader specificity. tmpzr1t_l9r_go_relaxed.owl non-pepsin proteinase activity|cathepsin E-like acid proteinase activity|EMAP|cathepsin D-like acid proteinase activity|cathepsin D-type proteinase activity|slow-moving proteinase activity|erythrocyte membrane aspartic proteinase activity|SMP|cathepsin E activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003673 biolink:NamedThing obsolete Gene_Ontology OBSOLETE. A controlled vocabulary that can be applied to all organisms even as knowledge of gene and protein roles in cells is accumulating and changing. GO provides three structured networks of defined terms to describe gene product attributes. tmpzr1t_l9r_go_relaxed.owl Gene_Ontology This term was made obsolete because more specific terms were created. True biological_process owl:Class GO:0030824 biolink:NamedThing obsolete negative regulation of cGMP metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving cGMP. tmpzr1t_l9r_go_relaxed.owl down regulation of cGMP metabolic process|down-regulation of cGMP metabolic process|downregulation of cGMP metabolic process|inhibition of cGMP metabolic process|negative regulation of cGMP metabolism The reason for obsoletion is that the term represents the regulation of a signaling pathway, and not regulation of metabolism. True biological_process owl:Class GO:1901204 biolink:NamedThing obsolete regulation of adrenergic receptor signaling pathway involved in heart process OBSOLETE. Any process that modulates the frequency, rate or extent of a cardiac adrenergic receptor signaling pathway. tmpzr1t_l9r_go_relaxed.owl regulation of beta-adrenergic receptor signalling pathway involved in heart process|regulation of adrenergic receptor signalling pathway involved in heart process https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. hjd 2012-07-30T18:32:51Z True biological_process owl:Class GO:0003818 biolink:NamedThing obsolete complement factor I activity OBSOLETE. Catalysis of the inactivation of complement subcomponents C3b, iC3b and C4b by proteolytic cleavage. tmpzr1t_l9r_go_relaxed.owl complement factor I activity|C3b/C4b inactivator activity|complement C3b/C4b inactivator|complement C4bi|complement C3b inactivator|complement component C3b inactivator activity|conglutinogen-activating factor C|complement C4b inactivator|C3b inactivator activity|C3bINA|factor I GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GOREL:0002004 biolink:NamedThing results_in_fission_of tmpzr1t_l9r_go_relaxed.owl GOREL:0002004 external results_in_fission_of GO:0022014 biolink:NamedThing obsolete radial glial cell division in subpallium OBSOLETE. The division of a radial glial cell in the subpallium. A radial glial cell is a precursor cell that gives rise to neurons and astrocytes. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0005038 biolink:NamedThing obsolete death receptor interacting protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl death receptor interacting protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005515|GO:0005123 True molecular_function owl:Class GO:0052177 biolink:NamedThing obsolete metabolism by symbiont of host xylan OBSOLETE. The chemical reactions and pathways performed by an organism involving xylan within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0016659 biolink:NamedThing obsolete oxidoreductase activity, acting on NADH or NADPH, other acceptor OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, a heme protein, NAD, NADP, a nitrogenous group, a quinone or similar compound or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on NADH or NADPH, other acceptor This term was made obsolete because it was an unnecessary grouping term. GO:0016651 True molecular_function owl:Class GO:0030303 biolink:NamedThing obsolete stromelysin 2 activity OBSOLETE. Catalysis of the cleavage of peptide bonds in collagen with preferential cleavage where P1', P2' and P3' are hydrophobic residues; action on collagen types III, IV and V is weak. tmpzr1t_l9r_go_relaxed.owl proteoglycanase 2|matrix metalloproteinase 10 activity|stromelysin 2 activity|MMP-10|transin 2 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030828 biolink:NamedThing obsolete positive regulation of cGMP biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP. tmpzr1t_l9r_go_relaxed.owl upregulation of cGMP biosynthetic process|stimulation of cGMP biosynthetic process|positive regulation of cGMP formation|up-regulation of cGMP biosynthetic process|up regulation of cGMP biosynthetic process|positive regulation of cGMP anabolism|positive regulation of cGMP biosynthesis|positive regulation of cGMP synthesis|activation of cGMP biosynthetic process The reason for obsoletion is that this term represent the regulation of a signaling pathway, not regulation of metabolism. GO:0004383 True biological_process owl:Class GO:0033124 biolink:NamedThing obsolete regulation of GTP catabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl regulation of GTP catabolism|regulation of GTP breakdown|regulation of GTP degradation The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0043087 True biological_process owl:Class GO:0046235 biolink:NamedThing obsolete gallate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of gallate, the anion of gallic acid (3,4,5-trihydroxybenzoic acid). tmpzr1t_l9r_go_relaxed.owl gallate formation|gallic acid biosynthesis|gallate biosynthesis|gallate anabolism|gallic acid biosynthetic process|gallate synthesis This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0030304 biolink:NamedThing obsolete trypsin inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase trypsin. tmpzr1t_l9r_go_relaxed.owl trypsin inhibitor activity GO:0004867 This term was made obsolete because it represents a regulator of an obsolete molecular function. True molecular_function owl:Class GO:0006133 biolink:NamedThing obsolete 5,10-methylenetetrahydrofolate oxidation OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl 5,10-methylenetetrahydrofolate oxidation This term was made obsolete because it is defined as a function term and is in the process ontology. GO:0004488|GO:0033738|GO:0004487|GO:0004489 True biological_process owl:Class GO:0106198 biolink:NamedThing obsolete translocase activity acting on inorganic anions linked to a decarboxylation reaction OBSOLETE. Catalysis of the translocation of an inorganic anion linked to a decarboxylation reaction. tmpzr1t_l9r_go_relaxed.owl EC:7.3.4.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:20:14Z True molecular_function owl:Class GO:0023062 biolink:NamedThing obsolete signal transmission via transcytosis OBSOLETE. The process in which a signal is conveyed via transcytosis. Transcytosis is the directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side. tmpzr1t_l9r_go_relaxed.owl signal transmission via transcytosis This term was made obsolete because the meaning of the term is ambiguous. GO:0023052|GO:0045056 2010-02-16T09:30:50Z True biological_process owl:Class GO:0043747 biolink:NamedThing obsolete N2-acetyl-L-lysine deacetylase activity OBSOLETE. Catalysis of the reaction: N2-acetyl-L-lysine + H2O = acetate + L-lysine. tmpzr1t_l9r_go_relaxed.owl N-acetyl-lysine deacetylase activity https://github.com/geneontology/go-ontology/issues/18908 RHEA:28598|MetaCyc:RXN-5185 This term was obsoleted because there is no evidence that it exists. True molecular_function owl:Class GO:0052236 biolink:NamedThing obsolete negative chemotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0009498 biolink:NamedThing obsolete bacterial-type ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bacterial-type ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0043459 biolink:NamedThing obsolete response to short exposure to lithium ion OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a single or short exposure to a lithium ion stimulus. tmpzr1t_l9r_go_relaxed.owl response to short exposure to lithium ion This term was made obsolete because 'short' is not a quantitative or meaningful measurement of time. True biological_process owl:Class RO:0002295 biolink:NamedThing results in developmental progression of tmpzr1t_l9r_go_relaxed.owl RO:0002295 external results_in_developmental_progression_of GO:0034648 biolink:NamedThing obsolete histone demethylase activity (H3-dimethyl-K4 specific) OBSOLETE. Catalysis of the removal of a methyl group from dimethylated lysine at position 4 of the histone H3 protein. tmpzr1t_l9r_go_relaxed.owl histone demethylase activity (H3-K4-me2 specific) https://github.com/geneontology/go-ontology/issues/21089 This term was obsoleted to align with RHEA and EC: this is a sub-reaction both in RHEA:60208 and EC:1.14.11.67. GO:0140682|GO:0034647 True molecular_function owl:Class GO:0100053 biolink:NamedThing obsolete positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sulfate assimilation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0006252 biolink:NamedThing obsolete CTP reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl CTP reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051065 True biological_process owl:Class GO:0106178 biolink:NamedThing obsolete translocase activity OBSOLETE. Catalysis the movement of ions or molecules across membranes or their separation within membranes. tmpzr1t_l9r_go_relaxed.owl EC:7.-.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:41:06Z True molecular_function owl:Class GO:0006943 biolink:NamedThing obsolete chemi-mechanical coupling OBSOLETE. The conversion of chemical energy into mechanical work (as in the contraction of a muscle). tmpzr1t_l9r_go_relaxed.owl mechanochemical coupling|chemi-mechanical coupling This term was made obsolete because its meaning is vague, and it does not fit with other terms in GO. GO:0009612|GO:0050954 True biological_process owl:Class GO:0045097 biolink:NamedThing obsolete basic/neutral keratin OBSOLETE. A type of intermediate filament. tmpzr1t_l9r_go_relaxed.owl type II intermediate filament|basic/neutral keratin GO:0045095 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0052505 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont cell wall callose deposition OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related symbiont cell wall callose deposition|induction by organism of defense-related symbiont cell wall callose deposition This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052416 biolink:NamedThing obsolete metabolism by host of symbiont macromolecule OBSOLETE. The chemical reactions and pathways performed by an organism involving macromolecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0031377 biolink:NamedThing obsolete mitochondrial type II fatty acid synthase complex OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity, located in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial type II FAS complex|mitochondrial type II fatty acid synthase complex Obsoleted because type II fatty acid synthases are not complexes True cellular_component owl:Class GO:1900547 biolink:NamedThing obsolete negative regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in negative regulation of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl negative regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. di 2012-05-14T11:40:54Z True biological_process owl:Class GO:1990908 biolink:NamedThing obsolete Lys63-specific zinc metallopeptidase deubiquitinase activity OBSOLETE. Hydrolysis of Lys63-Linked ubiquitin unit(s) from a ubiquitinated protein by a mechanism where zinc acts as the nucleophile. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-12-03T14:25:04Z True molecular_function owl:Class GO:0048277 biolink:NamedThing obsolete nonexocytotic vesicle docking OBSOLETE. The initial attachment of a transport vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during a non-exocytotic process. tmpzr1t_l9r_go_relaxed.owl nonexocytotic vesicle docking|non-exocytotic vesicle docking GO:0048278 This term was made obsolete because it violates the principle of positivity. True biological_process owl:Class GO:0032524 biolink:NamedThing obsolete nutrient export OBSOLETE. The directed movement of nutrients out of a cell or organelle. tmpzr1t_l9r_go_relaxed.owl nutrient export This term was made obsolete because "nutrient" is not defined, and does not have a consistent meaning. GO:0006810 True biological_process owl:Class GO:0100043 biolink:NamedThing obsolete negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular response to alkaline pH. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0035826 biolink:NamedThing obsolete rubidium ion transport OBSOLETE. The directed movement of rubidium ions (Rb+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl Rb+ transport|rubidium cation transport This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-04T02:53:27Z True biological_process owl:Class GO:0019832 biolink:NamedThing obsolete mercuric sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mercuric sensitivity/resistance GO:0046689 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0044146 biolink:NamedThing obsolete negative regulation of growth of symbiont involved in interaction with host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of growth of symbiont during interaction with host This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-06T02:04:24Z True biological_process owl:Class GO:0000231 biolink:NamedThing obsolete cytoplasmic mitotic chromosome OBSOLETE. A chromosome found in the cytoplasm during mitosis. tmpzr1t_l9r_go_relaxed.owl cytoplasmic mitotic chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0000793 True cellular_component owl:Class GO:0071530 biolink:NamedThing obsolete FHA domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an FHA (forkhead-associated) domain interaction. tmpzr1t_l9r_go_relaxed.owl forkhead-associated domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T01:57:36Z True biological_process owl:Class GO:0070018 biolink:NamedThing obsolete transforming growth factor beta type I receptor homodimeric complex OBSOLETE. A receptor complex that consists of two transforming growth factor beta (TGF-beta) type I receptor monomers. TGF-beta type I receptor dimers form in the presence or absence of ligand, and can associate with ligand-bound TGF-beta type II receptor dimers. tmpzr1t_l9r_go_relaxed.owl TGF-beta type I receptor dimer|TGFBR1 homodimer|transforming growth factor beta type I receptor complex|TGF-beta type I receptor complex https://github.com/geneontology/go-ontology/issues/12676 This term was made obsolete because it does not represent a physiological complex. True cellular_component owl:Class GO:0097015 biolink:NamedThing obsolete bacterial-type flagellar cytoplasm OBSOLETE. All of the contents of a bacterial-type flagellum, excluding the plasma membrane surrounding the flagellum. tmpzr1t_l9r_go_relaxed.owl bacterial-type flagellum cytoplasm The reason for obsoletion is that this term describes a cellular component that does not exist. pr 2011-03-23T01:59:44Z True cellular_component owl:Class GO:0019214 biolink:NamedThing obsolete surfactant activity OBSOLETE. The action of reducing the surface tension of a liquid. tmpzr1t_l9r_go_relaxed.owl surfactant activity This term was made obsolete because it represents involvement in a process. GO:0050828 True molecular_function owl:Class GO:0035555 biolink:NamedThing obsolete initiation of Roundabout signal transduction OBSOLETE. The process in which a SLIT protein causes activation of the receptor, Roundabout (ROBO). tmpzr1t_l9r_go_relaxed.owl initiation of Roundabout signal transduction This term was made obsolete because the meaning of the term is ambiguous. GO:0048495|GO:0035385|GO:0038023 bf 2010-05-14T11:10:20Z True biological_process owl:Class GO:0018135 biolink:NamedThing obsolete peptidyl-cysteine cyclase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peptidyl-cysteine cyclase activity EC:4.2.1.- This term was made obsolete because there is no record of why it was added, and no evidence can be found to suggest that this activity exists. True molecular_function owl:Class GO:0052394 biolink:NamedThing obsolete induction by organism of defense-related symbiont cell wall thickening OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of defense-related symbiont cell wall thickening|activation by organism of symbiont defense-related cell wall thickening|activation by organism of symbiont defensive cell wall thickening|induction by organism of symbiont defensive cell wall thickening This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0071899 biolink:NamedThing obsolete negative regulation of estrogen receptor binding OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of estrogen receptor binding, interacting selectively with an estrogen receptor. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19354 This term was obsoleted because it represents a molecular function. mah 2010-09-15T02:51:10Z True biological_process owl:Class GO:0007363 biolink:NamedThing obsolete positive regulation of terminal gap gene transcription OBSOLETE. The activation of genes encoding transcription factors at the anterior and posterior ends of an insect embryo by a combination of maternal regulatory signals and interactions among themselves; exemplified by the activation of expression of the Drosophila tailless and huckebein genes. tmpzr1t_l9r_go_relaxed.owl upregulation of terminal gap gene transcription|up regulation of terminal gap gene transcription|activation of terminal gap gene transcription|stimulation of terminal gap gene transcription|up-regulation of terminal gap gene transcription|activation of terminal gap gene This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:1905925 biolink:NamedThing obsolete negative regulation of invadopodium assembly OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of invadopodium assembly. tmpzr1t_l9r_go_relaxed.owl down-regulation of invadopodium assembly|inhibition of invadopodium formation|down regulation of invadopodium formation|down-regulation of invadopodium formation|negative regulation of invadopodium formation|down regulation of invadopodium assembly|inhibition of invadopodium assembly|downregulation of invadopodium formation|downregulation of invadopodium assembly This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:38:39Z True biological_process owl:Class GO:0100069 biolink:NamedThing obsolete negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates neuron apoptotic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052143 biolink:NamedThing obsolete chemotaxis on or near host involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl chemotaxis on or near host during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1900413 biolink:NamedThing obsolete positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of phospholipid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of phospholipid biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phospholipid synthesis by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T03:41:58Z True biological_process owl:Class GO:0100063 biolink:NamedThing obsolete regulation of dipeptide transmembrane transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates dipeptide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl The term was obsoleted because it is better represented by a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052374 biolink:NamedThing obsolete negative regulation by symbiont of entry into host OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent to which it enters into the host organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation by symbiont of entry into host|down-regulation by symbiont of entry into host|down regulation by symbiont of entry into host|inhibition by symbiont of entry into host https://github.com/geneontology/go-ontology/issues/18779 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0004212 biolink:NamedThing obsolete lysosomal cysteine-type endopeptidase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lysosomal cysteine-type endopeptidase This term was made obsolete because it contains both component and function information. GO:0005764|GO:0004197 True molecular_function owl:Class GO:0006800 biolink:NamedThing obsolete oxygen and reactive oxygen species metabolic process OBSOLETE. The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH). tmpzr1t_l9r_go_relaxed.owl oxygen and ROS metabolic process|oxygen and reactive oxygen species metabolic process|oxygen and ROI metabolism|oxygen and reactive oxygen species metabolism|oxygen and active oxygen species metabolism|oxygen and reactive oxidative species metabolism|oxygen and ROS metabolism|oxygen and AOS metabolism|oxygen and reactive oxygen intermediate metabolism This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together. GO:0072593|GO:0072592 True biological_process owl:Class GO:0052210 biolink:NamedThing obsolete interaction with other organism via protein secreted by type III secretion system involved in symbiotic interaction OBSOLETE. An interaction with a second organism mediated by a substance secreted by the first organism by a type III secretion system, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with other organism via protein secreted by type III secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0031659 biolink:NamedThing obsolete positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G1/S transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl G1/S-specific up regulation of cyclin-dependent protein kinase activity|G1/S-specific up-regulation of cyclin-dependent protein kinase activity|G1/S-specific positive regulation of cyclin-dependent protein kinase activity|positive regulation of cyclin-dependent protein kinase activity during G1/S|G1/S-specific activation of cyclin-dependent protein kinase activity|G1/S-specific stimulation of cyclin-dependent protein kinase activity|G1/S-specific upregulation of cyclin-dependent protein kinase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S The term has been obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0023067 biolink:NamedThing obsolete signal transmission via lymphatic system OBSOLETE. The process in which a signal is conveyed via the lymphatic system. tmpzr1t_l9r_go_relaxed.owl signal transmission via lymphatic system This term was made obsolete because the meaning of the term is ambiguous. GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class GO:0030404 biolink:NamedThing obsolete collagenase 3 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl MMP-13|matrix metalloproteinase 13|collagenase 3 activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003074 biolink:NamedThing obsolete regulation of diuresis OBSOLETE. Any process that modulates the rate of diuresis. Diuresis is the process of renal water excretion. tmpzr1t_l9r_go_relaxed.owl regulation of diuresis This term was made obsolete because its definition was inaccurate. GO:0035809 True biological_process owl:Class GO:0072367 biolink:NamedThing obsolete regulation of lipid transport by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of lipid transport by regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:17:54Z True biological_process owl:Class GO:0052174 biolink:NamedThing obsolete metabolism by symbiont of host macromolecule OBSOLETE. The chemical reactions and pathways performed by an organism involving macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0005054 biolink:NamedThing obsolete peroxisome integral membrane receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxisome integral membrane receptor|Pas20p This term was made obsolete because it describes a cellular component. GO:0038023 True molecular_function owl:Class GO:0051181 biolink:NamedThing obsolete cofactor transport OBSOLETE. The directed movement of a cofactor into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A cofactor is a substance that is required for the activity of an enzyme or other protein. tmpzr1t_l9r_go_relaxed.owl vitamin or cofactor transport 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0009494 biolink:NamedThing obsolete chloroplast-type ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chloroplast-type ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0004281 biolink:NamedThing obsolete pancreatic elastase II activity OBSOLETE. Catalysis of the preferential cleavage of Leu-Xaa, Met-Xaa and Phe-Xaa. Hydrolyzes elastin. tmpzr1t_l9r_go_relaxed.owl pancreatic elastase II activity|pancreatic elastase 2 GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990271 biolink:NamedThing obsolete anti-Mullerian hormone OBSOLETE. Combining with anti-Mullerian hormone to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl anti-Mullerian hormone An example of this is Amdh2 in M. musculus, UniprotKB:Q8K592-1 in PMID:23624077. hjd 2014-01-14T20:38:39Z True molecular_function owl:Class GO:0052216 biolink:NamedThing obsolete chemotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl chemotaxis in environment of other organism during symbiotic interaction|chemotaxis in response to environment of other organism https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052414 biolink:NamedThing obsolete metabolism by host of symbiont glucan OBSOLETE. The chemical reactions and pathways performed by an organism involving glucans within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0004600 biolink:NamedThing obsolete cyclophilin OBSOLETE. A protein to which cyclosporin A (an immunosuppressant) binds. Possesses peptidyl-prolyl isomerase activity. tmpzr1t_l9r_go_relaxed.owl cyclophilin This term was made obsolete because it does not represent a molecular function. GO:0016018|GO:0003755 True molecular_function owl:Class GO:0009495 biolink:NamedThing obsolete thioredoxin-like 2Fe-2S ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl thioredoxin-like 2Fe-2S ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0007070 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl down regulation of transcription from RNA polymerase II promoter during mitosis|negative regulation of transcription from Pol II promoter during mitosis|inhibition of transcription from RNA polymerase II promoter during mitosis|negative regulation of transcription from RNA polymerase II promoter, mitotic|mitotic repression of transcription from Pol II promoter|down-regulation of transcription from RNA polymerase II promoter during mitosis|downregulation of transcription from RNA polymerase II promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0000122 True biological_process owl:Class GO:1990803 biolink:NamedThing obsolete protein phosphorylation involved in protein localization to spindle microtubule OBSOLETE. Any protein phosphorylation process involved in localizing a protein to the spindle microtubule. tmpzr1t_l9r_go_relaxed.owl protein phosphorylation involved in protein localisation to spindle microtubule|protein amino acid phosphorylation involved in protein localisation in spindle microtubule|protein amino acid phosphorylation involved in protein localization in spindle microtubule|protein phosphorylation involved in protein localisation in spindle microtubule|protein amino acid phosphorylation involved in protein localisation to spindle microtubule|protein phosphorylation involved in protein localization in spindle microtubule|protein amino acid phosphorylation involved in protein localization to spindle microtubule https://github.com/geneontology/go-ontology/issues/14137 This term has been obsoleted because it represents a GO-CAM model. rb 2015-07-16T21:09:07Z True biological_process owl:Class GO:1904720 biolink:NamedThing obsolete regulation of mRNA endonucleolytic cleavage involved in unfolded protein response OBSOLETE. Any process that modulates the frequency, rate or extent of mRNA endonucleolytic cleavage involved in unfolded protein response. tmpzr1t_l9r_go_relaxed.owl regulation of HAC1-type intron splice site recognition and cleavage|regulation of IRE1-mediated XBP-1 mRNA cleavage|regulation of XBP1 mRNA cleavage|regulation of HAC1 mRNA cleavage The reason for obsoletion is that this process being regulated (GO:0070055 mRNA endonucleolytic cleavage involved in unfolded protein response) was obsoleted. GO:1903895 bf 2015-10-08T14:52:49Z True biological_process owl:Class GO:0010671 biolink:NamedThing obsolete negative regulation of oxygen and reactive oxygen species metabolic process OBSOLETE. Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH). tmpzr1t_l9r_go_relaxed.owl negative regulation of oxygen and reactive oxygen species metabolic process This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together. GO:2000378|GO:2000375 True biological_process owl:Class GO:0052190 biolink:NamedThing obsolete modulation by symbiont of host phagocytosis OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0052353 biolink:NamedThing obsolete catabolism by host of symbiont carbohydrate OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of carbohydrate molecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0052343 biolink:NamedThing obsolete positive regulation by organism of symbiont phytoalexin production OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the production of phytoalexins as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont phytoalexin production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1901635 biolink:NamedThing obsolete regulation of maintenance of presynaptic active zone structure OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of presynaptic active zone structure. tmpzr1t_l9r_go_relaxed.owl regulation of maintenance of presynaptic active zone structure This term was obsoleted at the TermGenie Gatekeeper stage. ans 2012-11-15T14:17:03Z True biological_process owl:Class GO:0006804 biolink:NamedThing obsolete peroxidase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxidase reaction GO:0004601 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0044007 biolink:NamedThing obsolete dissemination or transmission of symbiont from host OBSOLETE. The movement of an organism from a host to another host or from a host to another place in the environment. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl dissemination or transmission of organism from host This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont. True biological_process owl:Class GO:0075108 biolink:NamedThing obsolete negative regulation by symbiont of host adenylate cyclase activity OBSOLETE. Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of the host adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Negative regulation by symbiont of host ATP pyrophosphate-lyase activity|Negative regulation by symbiont of host cAMP generating peptide activity|Negative regulation by symbiont of host adenylylcyclase activity|Negative regulation by symbiont of host 3',5'-cyclic AMP synthetase activity|Negative regulation by symbiont of host adenyl cyclase activity|Negative regulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity|Negative regulation by symbiont of host ATP diphosphate-lyase (cyclizing) activity|Negative regulation by symbiont of host adenylyl cyclase activity This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0033237 biolink:NamedThing obsolete 11-beta-hydroxysteroid dehydrogenase (NADP+) activity OBSOLETE. Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+. tmpzr1t_l9r_go_relaxed.owl corticosteroid 11-beta-dehydrogenase activity|beta-hydroxysteroid dehydrogenase|11beta-hydroxysteroid:NADP+ 11-oxidoreductase|11-beta-hydroxysteroid dehydrogenase (NADP+) activity GO:0070524 True molecular_function owl:Class GO:0061434 biolink:NamedThing obsolete regulation of replicative cell aging by regulation of transcription from RNA polymerase II promoter in response to caloric restriction OBSOLETE. Any process that modulates the frequency, rate or extent of replicative cell aging through a mechanism that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a caloric restriction stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0090398|GO:0006357 dph 2012-02-09T09:06:09Z True biological_process owl:Class GO:0051420 biolink:NamedThing obsolete nebulette binding OBSOLETE. Binding to nebulette, a 107 kDa protein associated with the I-Z-I complex of cardiac myofibrils. It shows a high degree of homology with skeletal muscle nebulin. tmpzr1t_l9r_go_relaxed.owl nebulette binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0072363 biolink:NamedThing obsolete regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of glycolysis by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:08:25Z True biological_process owl:Class GO:0003802 biolink:NamedThing obsolete coagulation factor VIIa activity OBSOLETE. Catalysis of the selective cleavage of one Arg-Ile bond in factor X to form factor Xa, and on factor IX to form factor IXa beta. tmpzr1t_l9r_go_relaxed.owl blood-coagulation factor VIIa|blood coagulation factor VII activity|coagulation factor VIIa activity|activated blood coagulation factor VII GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0072500 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor OBSOLETE. Any process in which a ligand-bound hormone receptor acts in the nucleus to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor This term was made obsolete because it is unclear whether the term represents the action of the receptor or the entire process of transcription regulation. The term 'nuclear hormone receptor' is also misleading since many of these receptors reside in the cytoplasm until they are bound by a ligand. GO:0030522|GO:0004879|GO:0000122|GO:0030374 mah 2010-12-16T11:47:39Z True biological_process owl:Class GO:0075159 biolink:NamedThing obsolete regulation of G-protein alpha subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its G-protein alpha subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont G-protein alpha subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0106188 biolink:NamedThing obsolete translocase activity acting on hydrons linked the hydrolysis of a nucleoside triphosphate OBSOLETE. Catalysis of the translocation of hydrons linked to the hydrolysis of a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.1.2.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-07T18:09:07Z True molecular_function owl:Class GO:0075148 biolink:NamedThing obsolete positive regulation of signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1900203 biolink:NamedThing obsolete positive regulation of spread of virus in host, cell to cell OBSOLETE. Any process that activates or increases the frequency, rate or extent of spread of virus in host, cell to cell. tmpzr1t_l9r_go_relaxed.owl activation of viral spread within host, cell to cell|activation of cell to cell spread of virus within host|upregulation of spread of virus in host, cell to cell|upregulation of viral spread within host, cell to cell|upregulation of cell to cell spread of virus within host|positive regulation of spread of virus in host, cell to cell|up regulation of cell to cell spread of virus within host|up-regulation of spread of virus in host, cell to cell|upregulation of spread of virus within host, cell to cell|up regulation of spread of virus in host, cell to cell|up regulation of spread of virus within host, cell to cell|positive regulation of viral spread within host, cell to cell|positive regulation of cell to cell spread of virus within host|up regulation of viral spread within host, cell to cell|up-regulation of viral spread within host, cell to cell|up-regulation of spread of virus within host, cell to cell|up-regulation of cell to cell spread of virus within host|activation of spread of virus within host, cell to cell|positive regulation of spread of virus within host, cell to cell|activation of spread of virus in host, cell to cell This term was obsoleted at the TermGenie Gatekeeper stage. pm 2012-03-21T01:16:00Z True biological_process owl:Class GO:1902002 biolink:NamedThing obsolete protein phosphorylation involved in cellular protein catabolic process OBSOLETE. Any protein phosphorylation that is involved in cellular protein catabolic process. tmpzr1t_l9r_go_relaxed.owl protein phosphorylation involved in cellular protein catabolism|protein amino acid phosphorylation involved in cellular protein breakdown|protein amino acid phosphorylation involved in cellular protein catabolism|protein phosphorylation involved in cellular protein breakdown|protein phosphorylation involved in cellular protein degradation|protein amino acid phosphorylation involved in cellular protein degradation|protein amino acid phosphorylation involved in cellular protein catabolic process https://github.com/geneontology/go-ontology/issues/14137 This term has been obsoleted because it represents a GO-CAM model. pr 2013-03-21T10:08:19Z True biological_process owl:Class GO:0072484 biolink:NamedThing obsolete detection of stimulus involved in spindle assembly checkpoint OBSOLETE. The series of events in which information about spindle assembly is received and converted into a molecular signal, contributing to a spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl spindle assembly checkpoint sensor mechanism|spindle assembly checkpoint sensor process|sensing involved in spindle assembly checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T12:19:16Z True biological_process owl:Class GO:1901489 biolink:NamedThing obsolete positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process in response to decreased oxygen levels OBSOLETE. Negative regulation of transcription factor catabolism in response to decreased oxygen levels, which results in positive regulation of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl positive regulation of SREBP signaling by negative regulation of transcription factor catabolism at low oxygen levels|positive regulation of SREBP signaling pathway by negative regulation of SREBP degradation, in response to decreased oxygen|positive regulation of SREBP signaling by inhibition of SREBP degradation in response to decreased oxygen levels|positive regulation of SREBP-mediated signaling pathway in response to decreased oxygen levels by negative regulation of transcription factor catabolic process|positive regulation of SREBP-mediated signaling pathway in absence of oxygen by negative regulation of transcription factor catabolic process The reason for obsoletion is that this term should be represented by a GO-CAM model. bf 2012-10-09T08:23:50Z True biological_process owl:Class GO:0004206 biolink:NamedThing obsolete caspase-10 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-10 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0016313 biolink:NamedThing obsolete inositol-1,4,5-trisphosphate phosphatase OBSOLETE. The removal of one of the phosphate groups from an inositol triphosphate to produce an inositol bisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol-1,4,5-trisphosphate phosphatase This term was made obsolete because it is a redundant grouping term with only one child. GO:0046030 True molecular_function owl:Class GO:0039712 biolink:NamedThing obsolete induction by virus of host catalytic activity OBSOLETE. Any viral process that activates or increases the frequency, rate or extent of host catalytic activity. tmpzr1t_l9r_go_relaxed.owl induction by virus of host enzyme activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. bf 2013-12-19T13:21:45Z True biological_process owl:Class GO:0042099 biolink:NamedThing obsolete gamma-delta T cell receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl gamma-delta T cell receptor activity This term was made obsolete because it describes a receptor type, and not an activity. GO:0032394|GO:0032395|GO:0042605 True molecular_function owl:Class GO:0042031 biolink:NamedThing obsolete angiotensin-converting enzyme inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of angiotensin-converting enzyme, thereby preventing the synthesis of angiotensin II from its precursor, angiotensin I. tmpzr1t_l9r_go_relaxed.owl peptidyl dipeptidase A inhibitor|angiotensin-converting enzyme inhibitor activity|ACE inhibitor GO:0060422 This term was made obsolete because it represents a regulator of a non-existent molecular function term. True molecular_function owl:Class GO:0052429 biolink:NamedThing obsolete modulation by organism of symbiont B-cell mediated immune response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the B-cell mediated immune response of a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation by organism of symbiont B-cell mediated immune response|modulation by organism of symbiont B-cell mediated immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0042624 biolink:NamedThing obsolete ATPase activity, uncoupled OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction is not directly coupled to any other reaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that the there is no convincing example of a protein with this function. True molecular_function owl:Class GO:0045871 biolink:NamedThing obsolete negative regulation of rhodopsin gene expression OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of rhodopsin gene expression. tmpzr1t_l9r_go_relaxed.owl negative regulation of rhodopsin gene activity|inhibition of rhodopsin gene activity|down-regulation of rhodopsin gene activity|down regulation of rhodopsin gene activity|downregulation of rhodopsin gene activity This term was obsoleted because it referes to a specific gene product. The gene product should be captured as an annotation extension using 'has input'. GO:0000122 True biological_process owl:Class GO:1903134 biolink:NamedThing obsolete trehalose catabolic process involved in cellular response to stress OBSOLETE. Any trehalose catabolic process that is involved in cellular response to stress. tmpzr1t_l9r_go_relaxed.owl trehalose breakdown involved in cellular response to stress|trehalose catabolism involved in cellular response to stress|mycose catabolic process involved in cellular response to stress|mycose catabolism involved in cellular response to stress|mykose catabolic process involved in cellular response to stress|trehalose degradation involved in cellular response to stress|mykose catabolism involved in cellular response to stress https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. al 2014-06-25T22:28:34Z True biological_process owl:Class GO:0031276 biolink:NamedThing obsolete negative regulation of lateral pseudopodium assembly OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of pseudopodia from the lateral side of the cell. tmpzr1t_l9r_go_relaxed.owl downregulation of lateral pseudopodium formation|down regulation of lateral pseudopodium formation|negative regulation of lateral pseudopodium formation|inhibition of lateral pseudopodium formation|down-regulation of lateral pseudopodium formation https://github.com/geneontology/go-ontology/issues/21738 GO:0120320 The regulation of lateral pseudopodium assembly terms were not used consistently. The negative regulation term has been replaced by GO:0120320 lateral pseudopodium retraction. True biological_process owl:Class GO:1990921 biolink:NamedThing obsolete proteasome localization to nuclear periphery OBSOLETE. A process in which a proteasome is transported to, or maintained in, a location within the nuclear periphery. tmpzr1t_l9r_go_relaxed.owl proteasome localisation to nuclear periphery This term was obsoleted at the TermGenie Gatekeeper stage. mah 2015-12-15T12:02:31Z True biological_process owl:Class GO:0008008 biolink:NamedThing obsolete membrane attack complex protein beta2 chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl membrane attack complex protein beta2 chain GO:0005579 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0016916 biolink:NamedThing obsolete inhibin OBSOLETE. Either of two glycoproteins (designated A and B), secreted by the gonads and present in seminal plasma and follicular fluid, that inhibit pituitary production of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl inhibin This term was made obsolete because it represents a gene product. GO:0046882|GO:0005160 True molecular_function owl:Class GO:0015253 biolink:NamedThing obsolete sugar/polyol channel activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl sugar/polyol channel activity This term was made obsolete because it represents two molecular functions. GO:0051119|GO:0015166 True molecular_function owl:Class GO:0101007 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter in response to salt stress OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0000122|GO:0071472 mec True biological_process owl:Class GO:0000059 biolink:NamedThing obsolete protein import into nucleus, docking OBSOLETE. A protein complex assembly process that contributes to protein import into the nucleus, and that results in the association of a cargo protein, a carrier protein such as an importin alpha/beta heterodimer, and a nucleoporin located at the periphery of the nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl protein-nucleus import, docking|protein docking during protein import into nucleus|protein transport from cytoplasm to nucleus, docking|protein docking during protein transport from cytoplasm to nucleus|protein docking during protein-nucleus import This term was made obsolete because the transient assembly is better captured as a protein-protein association, if at all. True biological_process owl:Class GO:0052450 biolink:NamedThing obsolete modulation by organism of induced systemic resistance in symbiont OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of induced systemic resistance in the symbiont organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of induced systemic resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0045750 biolink:NamedThing obsolete positive regulation of S phase of mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of S phase of mitotic cell cycle activity. tmpzr1t_l9r_go_relaxed.owl activation of S phase of mitotic cell cycle|up regulation of S phase of mitotic cell cycle|positive regulation of S-phase of mitotic cell cycle|positive regulation of S phase of mitotic cell cycle|stimulation of S phase of mitotic cell cycle|upregulation of S phase of mitotic cell cycle|up-regulation of S phase of mitotic cell cycle This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. True biological_process owl:Class GO:0008991 biolink:NamedThing obsolete serine-type signal peptidase activity OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor by a serine endopeptidase mechanism. tmpzr1t_l9r_go_relaxed.owl serine-type signal peptidase activity GO:0004252 This term was made obsolete because 'signal peptide' is difficult to define unambiguously, and because the term refers to gene products. True molecular_function owl:Class GO:0006733 biolink:NamedThing obsolete oxidoreduction coenzyme metabolic process OBSOLETE. The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. tmpzr1t_l9r_go_relaxed.owl oxidoreduction coenzyme metabolism 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:1902399 biolink:NamedThing obsolete detection of stimulus involved in G1 DNA damage checkpoint OBSOLETE. Any detection of stimulus that is involved in G1 DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl stimulus detection involved in G1/S DNA damage checkpoint|stimulus sensing involved in G1/S DNA damage checkpoint|stimulus detection involved in G1 DNA damage checkpoint|perception of stimulus involved in G1/S DNA damage checkpoint|detection of stimulus involved in G1/S DNA damage checkpoint|stimulus sensing involved in G1 DNA damage checkpoint|perception of stimulus involved in G1 DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. jl 2013-09-12T12:01:49Z True biological_process owl:Class GO:0044008 biolink:NamedThing obsolete dissemination or transmission of symbiont from host by vector OBSOLETE. The movement of an organism from one host to another (or another place in the environment) by means of a third organism (often an insect or other animal). The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl dissemination or transmission of organism from host by vector This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont. True biological_process owl:Class GO:0052115 biolink:NamedThing obsolete energy taxis in host environment OBSOLETE. The directed movement of a motile cell or organism in the environment of its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl energy taxis in response to host environment This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052487 biolink:NamedThing obsolete negative regulation by organism of symbiont jasmonic acid-mediated defense response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the jasmonic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl suppression by organism of symbiont JA-mediated defense response|negative regulation by organism of symbiont jasmonic acid-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0045189 biolink:NamedThing obsolete connective tissue growth factor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of CTGF, produced by human umbilical vein endothelial cells and by skin fibroblasts after activation with TGF-beta. tmpzr1t_l9r_go_relaxed.owl connective tissue growth factor formation|connective tissue growth factor synthesis|connective tissue growth factor anabolism|CTGF biosynthesis|connective tissue growth factor biosynthesis This term was obsoleted because it represent translation of a gene product, not a specific process. True biological_process owl:Class GO:0000047 biolink:NamedThing obsolete Rieske iron-sulfur protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Rieske iron-sulphur protein|Rieske iron-sulfur protein This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:1903162 biolink:NamedThing obsolete serine transmembrane transporter activity involved in serine import into cell OBSOLETE. Any serine transmembrane transporter activity that is involved in serine import into cell. tmpzr1t_l9r_go_relaxed.owl serine transmembrane transporter activity involved in serine import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:44Z True molecular_function owl:Class GO:0008943 biolink:NamedThing obsolete glyceraldehyde-3-phosphate dehydrogenase activity OBSOLETE. Catalysis of the reactions: glyceraldehyde 3-phosphate + phosphate + NAD(P)+ = 3-phospho-D-glyceroyl-phosphate + NAD(P)H + H+, and glyceraldehyde 3-phosphate + H2O + NAD(P)+ = 3-phospho-D-glycerate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl glyceraldehyde-3-phosphate dehydrogenase activity This term was made obsolete because it is a grouping term based on similar names. GO:0047100|GO:0043878|GO:0008886|GO:0004365 True molecular_function owl:Class GO:0016739 biolink:NamedThing obsolete oxidoreductase activity, acting on other substrates OBSOLETE. A grouping term for oxidoreductase that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on other substrates This term was made obsolete because it was an unnecessary grouping term. GO:0016491 True molecular_function owl:Class GO:0038075 biolink:NamedThing obsolete MAP kinase activity involved in innate immune response OBSOLETE. Catalysis of the reaction: protein + ATP = protein phosphate + ADP by a mitogen-activated protein kinase, as part of a MAPK signaling cascade that contributes to an innate immune response. tmpzr1t_l9r_go_relaxed.owl MAPK activity involved in innate immune response https://github.com/geneontology/go-ontology/issues/18000 This term was obsoleted because it should be represented as a GO-CAM model. bf 2012-01-26T02:35:52Z True molecular_function owl:Class GO:0007573 biolink:NamedThing obsolete age dependent increased protein content OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl age dependent increased protein content This term was made obsolete because it does not describe a biological process. GO:0007571 True biological_process owl:Class GO:0030567 biolink:NamedThing obsolete thrombin activator activity OBSOLETE. Increases the rate of proteolysis catalyzed by thrombin. tmpzr1t_l9r_go_relaxed.owl prothrombin activator activity|thrombin activator activity GO:0016504 This term was made obsolete because it represents a regulator of an obsolete molecular function. True molecular_function owl:Class GO:0052100 biolink:NamedThing obsolete intraspecies quorum sensing OBSOLETE. The process in which single-celled organisms of the same species monitor population density by detecting the concentration of small, diffusible signal molecules. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term was an unnecessary grouping term. True biological_process owl:Class GO:0009470 biolink:NamedThing obsolete class IIa cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class IIa cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0075089 biolink:NamedThing obsolete negative regulation by host of symbiont G protein-coupled receptor signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by host of symbiont G-protein coupled receptor protein signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0051194 biolink:NamedThing obsolete positive regulation of cofactor metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a cofactor. tmpzr1t_l9r_go_relaxed.owl up regulation of cofactor metabolic process|stimulation of cofactor metabolic process|up-regulation of cofactor metabolic process|activation of cofactor metabolic process|upregulation of cofactor metabolic process|positive regulation of cofactor metabolism 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0060969 biolink:NamedThing obsolete negative regulation of gene silencing OBSOLETE. Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22202 This term was obsoleted because its definition was too broad. GO:0031047|GO:0010629|GO:0031507 dph 2009-10-05T03:26:19Z True biological_process owl:Class GO:0052241 biolink:NamedThing obsolete positive chemotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0085040 biolink:NamedThing obsolete extra-invasive hyphal space OBSOLETE. The space between the symbiont plasma membrane and the extra-invasive hyphal membrane. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19013 This term was obsoleted because the cellular component represented is not different from 'host cytoplasm'. jl 2010-07-27T04:21:26Z True cellular_component owl:Class GO:0003793 biolink:NamedThing obsolete defense/immunity protein activity OBSOLETE. Any activity that plays a role in the defense/immune response of an organism against infection and disease. tmpzr1t_l9r_go_relaxed.owl defence/immunity protein activity|defense/immunity protein activity This term was made obsolete because it refers to involvement in a biological process. GO:0006952 True molecular_function owl:Class GO:0052473 biolink:NamedThing obsolete negative regulation by organism of symbiont B-cell mediated immune response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the B-cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont B-cell mediated immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1905249 biolink:NamedThing obsolete negative regulation of memory OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of memory. tmpzr1t_l9r_go_relaxed.owl inhibition of memory|suppression of memory This term was obsoleted at the TermGenie Gatekeeper stage. ha 2016-06-09T13:54:45Z True biological_process owl:Class GO:0043581 biolink:NamedThing obsolete mycelium development OBSOLETE. The process whose specific outcome is the progression of the mycelium over time, from its formation to the mature structure. A mycelium consists of a mass of branching, thread-like hyphae. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that the term is ambiguous. Three more clearly defined terms have been created that should be considered in its place. GO:0097737|GO:0097738|GO:0097736 True biological_process owl:Class GO:0005924 biolink:NamedThing obsolete cell-substrate adherens junction OBSOLETE. An adherens junction which connects a cell to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl hemi-adherens junction The reason for obsoletion is that, based on the most recent literature, there is no such structure in biology as 'cell-substrate adherens junction'. An 'adherens junction' is always a 'cell-cell junction' (PMIDs: 20571587, 17854762, 21422226, 28096264, 28401269, 26923917). True cellular_component owl:Class GO:0075162 biolink:NamedThing obsolete regulation of G-protein beta subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its G-protein beta subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont G-protein beta subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0071537 biolink:NamedThing obsolete C3HC4-type RING finger domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a C3HC4-type RING finger domain interaction. tmpzr1t_l9r_go_relaxed.owl zinc finger C3HC4 type domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T03:42:46Z True biological_process owl:Class GO:0016347 biolink:NamedThing obsolete calcium-independent cell adhesion molecule activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl calcium-independent cell adhesion molecule activity This term was made obsolete because it represents a gene product. GO:0005515|GO:0007161|GO:0016021|GO:0016338 True molecular_function owl:Class GO:0001577 biolink:NamedThing obsolete galectin OBSOLETE. A lectin that exhibits calcium independent binding of beta-galactoside sugars. tmpzr1t_l9r_go_relaxed.owl galectin|S-type lectin This term was made obsolete because it refers to a class of gene products. GO:0016936|GO:0007157 True molecular_function owl:Class GO:0005949 biolink:NamedThing obsolete aminoadipate-semialdehyde dehydrogenase complex OBSOLETE. A heterodimeric enzyme composed of an alpha and beta subunit. Catalyzes the formation of L-2-aminoadipate from L-2-aminoadipate 6-semialdehyde. tmpzr1t_l9r_go_relaxed.owl aminoadipate-semialdehyde dehydrogenase complex This term was made obsolete because the catalytic activity resides in a single polypeptide that is not part of a complex with other gene products. True cellular_component owl:Class GO:0008322 biolink:NamedThing obsolete Pro-X carboxypeptidase activity OBSOLETE. Catalysis of the cleavage of a Pro-Xaa bond to release a C-terminal amino acid. tmpzr1t_l9r_go_relaxed.owl Pro-X carboxypeptidase activity GO:0030536 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030618 biolink:NamedThing obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity OBSOLETE. A TGF-beta cytoplasmic mediator that is phosphorylated by a TGFbeta receptor and complexes with a common-partner mediator. The- heterocomplex translocates to the nucleus to regulate transcription. tmpzr1t_l9r_go_relaxed.owl receptor regulated SMAD protein|pathway restricted SMAD protein|pathway-specific SMAD protein|receptor-regulated SMAD protein|TGFbeta receptor, pathway-specific cytoplasmic mediator activity|TGF-beta receptor, pathway-specific cytoplasmic mediator activity|pathway-restricted SMAD protein https://github.com/geneontology/go-ontology/issues/16202 This term was obsoleted because it is redundant with other terms. GO:0000981|GO:0003712 True molecular_function owl:Class GO:0015053 biolink:NamedThing obsolete opsin OBSOLETE. Hydrophobic glycoprotein to which 11-cis-retinal binds as a Schiff base (in rhodopsin) or 3,4-didehydro-11-cis-retinal binds as a Schiff base in cyanopsin and porphyropsin. tmpzr1t_l9r_go_relaxed.owl opsin This term was made obsolete because it refers to a class of proteins. GO:0016021|GO:0009881|GO:0016918|GO:0046876|GO:0007602 True molecular_function owl:Class GO:0006224 biolink:NamedThing obsolete uridine kinase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl uridine kinase reaction GO:0004849 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:2000574 biolink:NamedThing obsolete regulation of microtubule motor activity OBSOLETE. Any process that modulates the frequency, rate or extent of microtubule motor activity. tmpzr1t_l9r_go_relaxed.owl regulation of kinesin motor activity|regulation of axonemal motor activity|regulation of kinetochore motor activity|regulation of kinesin|regulation of dynein ATPase activity|regulation of dynein https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140659 bf 2011-04-05T08:36:44Z True biological_process owl:Class GO:0030440 biolink:NamedThing obsolete activation of MAPKK during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPKK during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0033547 biolink:NamedThing obsolete myo-inositol hexakisphosphate biosynthetic process, via direct phosphorylation of inositol 1,4,5-trisphosphate OBSOLETE. The chemical reactions and pathways resulting in the formation of 1D myo-inositol 1,2,3,4,5,6-hexakisphosphate, phytate, by a pathway using inositol 1,4,5-trisphosphate produced from phosphatidylinositol 4,5-biphosphate hydrolysis by phospholipase C; in this pathway, inositol 1,4,5-trisphosphate is successively phosphorylated to yield inositol hexakisphosphate. tmpzr1t_l9r_go_relaxed.owl myo-inositol hexakisphosphate formation, via direct phosphorylation of inositol 1,4,5-trisphosphate|myo-inositol hexakisphosphate biosynthesis, via direct phosphorylation of inositol 1,4,5-trisphosphate|myo-inositol hexakisphosphate biosynthetic process, via direct phosphorylation of inositol 1,4,5-trisphosphate|phytate biosynthesis, via direct phosphorylation of inositol 1,4,5-trisphosphate|myo-inositol hexakisphosphate anabolism, via direct phosphorylation of inositol 1,4,5-trisphosphate|phytate biosynthetic process, via direct phosphorylation of inositol 1,4,5-trisphosphate|myo-inositol hexakisphosphate synthesis, via direct phosphorylation of inositol 1,4,5-trisphosphate MetaCyc:PWY-4541 This term was made obsolete because its only cross-reference points to a MetaCyc entry (PWY-4541) that was deleted from the MetaCyc database. True biological_process owl:Class GO:0044151 biolink:NamedThing obsolete growth of host on or near symbiont surface OBSOLETE. The increase in size or mass of an organism occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth of organism on or near symbiont surface https://github.com/geneontology/go-ontology/issues/18786 This term was obsoleted because it represents both a process and a location. jl 2009-08-06T03:16:19Z True biological_process owl:Class GO:0008125 biolink:NamedThing obsolete pancreatic elastase I activity OBSOLETE. Catalysis of the hydrolysis of proteins, including elastin. Preferential cleavage: Ala-Xaa. tmpzr1t_l9r_go_relaxed.owl serine elastase|elaszym|pancreatopeptidase E activity|pancreatic elastase I activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1904773 biolink:NamedThing obsolete cellular response to tetrachloromethane OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrachloromethane stimulus. tmpzr1t_l9r_go_relaxed.owl cellular response to CCL4|cellular response to carbon tetrachloride This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-10-28T20:59:21Z True biological_process owl:Class GO:1904532 biolink:NamedThing obsolete ATP-dependent microtubule motor activity, minus-end-directed involved in microtubule-based movement OBSOLETE. Any ATP-dependent microtubule motor activity, minus-end-directed that is involved in microtubule-based movement. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. vw 2015-07-31T06:45:48Z True molecular_function owl:Class GO:1990985 biolink:NamedThing obsolete apoptosis in response to oxidative stress OBSOLETE. Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to oxidative stress. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. pg 2016-11-17T14:12:17Z True biological_process owl:Class GO:0075235 biolink:NamedThing obsolete modulation of zoospore movement on or near host OBSOLETE. Any process that modulates the frequency, rate or extent of zoospore movement on or near host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of zoospore motility on or near host This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0030817 biolink:NamedThing obsolete regulation of cAMP biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl regulation of cyclic AMP biosynthetic process|regulation of 3',5' cAMP biosynthesis|regulation of cAMP formation|regulation of 3',5' cAMP biosynthetic process|regulation of 3',5'-cAMP biosynthesis|regulation of cyclic AMP biosynthesis|regulation of cAMP biosynthesis|regulation of cAMP anabolism|regulation of 3',5'-cAMP biosynthetic process|regulation of adenosine 3',5'-cyclophosphate biosynthetic process|regulation of adenosine 3',5'-cyclophosphate biosynthesis|regulation of cAMP synthesis https://github.com/geneontology/go-ontology/issues/14718 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0110144 biolink:NamedThing obsolete magnetosome part OBSOLETE. Any constituent part of a magnetosome, a membrane-bound organelle that envelops particles of magnetic iron minerals in magnetotactic bacteria. tmpzr1t_l9r_go_relaxed.owl GO:0110143 kmv 2019-05-30T17:36:02Z True cellular_component owl:Class GO:0044052 biolink:NamedThing obsolete interaction with host via substance released by membrane budding OBSOLETE. An interaction with the host organism mediated by a substance released via symbiont membrane budding, the evagination of a membrane resulting in formation of a vesicle. tmpzr1t_l9r_go_relaxed.owl interaction with host via substance released by symbiont membrane budding This term was obsoleted because it conflates a process and the mechanism of secretion of the gene product mediating the process. True biological_process owl:Class GO:0045858 biolink:NamedThing obsolete positive regulation of molecular function, epigenetic OBSOLETE. Any heritable epigenetic process that increases the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein activity, epigenetic|activation of protein activity, epigenetic|upregulation of protein activity, epigenetic|stimulation of protein activity, epigenetic|up regulation of protein activity, epigenetic|up-regulation of protein activity, epigenetic https://github.com/geneontology/go-ontology/issues/22203 This term was obsoleted because it is not an active process. True biological_process owl:Class GO:0006483 biolink:NamedThing obsolete peptidyl-aspartic acid/asparagine hydroxylation OBSOLETE. The hydroxylation of peptidyl-aspartic acid or asparagine. tmpzr1t_l9r_go_relaxed.owl peptidyl-aspartic acid/asparagine hydroxylation|aspartic acid/asparagine hydroxylation This term was made obsolete because it is a redundant grouping term. GO:0042265|GO:0042264 True biological_process owl:Class GO:0004218 biolink:NamedThing obsolete cathepsin S activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Similar to cathepsin L, but with much less activity on the terminal bond of Z-Phe-Arg-NHMec, and more activity on the terminal bond of Z-Val-Val-Arg-Xaa compounds. tmpzr1t_l9r_go_relaxed.owl cathepsin S activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052455 biolink:NamedThing obsolete modulation by organism of jasmonic acid levels in symbiont OBSOLETE. The alteration by an organism of the levels of jasmonic acid in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of jasmonic acid levels in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009614 biolink:NamedThing obsolete disease resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl disease resistance GO:0051707 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0005072 biolink:NamedThing obsolete transforming growth factor beta receptor, cytoplasmic mediator activity OBSOLETE. Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl TGF-beta receptor, cytoplasmic mediator activity|TGFbeta receptor, cytoplasmic mediator activity https://github.com/geneontology/go-ontology/issues/16202 This term was obsoleted because it is redundant with other terms. GO:0000981 True molecular_function owl:Class GO:0044791 biolink:NamedThing obsolete positive regulation by host of viral release from host cell OBSOLETE. A process in which a host organism activates or increases the frequency, rate or extent of the release of a virus with which it is infected, from its cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22168 GO:0019076 This term was obsoleted because there is no evidence that it is a regulated process. jl 2013-06-06T10:51:48Z True biological_process owl:Class GO:0001606 biolink:NamedThing obsolete GPR37/endothelin B-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPR37/endothelin B-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0031661 biolink:NamedThing obsolete negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M transition of mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G2/M transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl G2/M-specific inhibition of cyclin-dependent protein kinase activity|negative regulation of cyclin-dependent protein kinase activity involved in G2/M|G2/M-specific down regulation of cyclin-dependent protein kinase activity|negative regulation of cyclin-dependent protein kinase activity during G2/M|G2/M-specific down-regulation of cyclin-dependent protein kinase activity|G2/M-specific negative regulation of cyclin-dependent protein kinase activity|G2/M-specific downregulation of cyclin-dependent protein kinase activity This term was obsoleted because it is a MF represented as a BP. GO:0010389 True biological_process owl:Class GO:0000078 biolink:NamedThing obsolete cytokinesis after mitosis checkpoint OBSOLETE. A mitotic cell cycle checkpoint that detects whether chromosome segregation is complete and negatively regulates cytokinesis following mitosis. tmpzr1t_l9r_go_relaxed.owl cell shape checkpoint|cell morphogenesis checkpoint The reason this term was made obsolete is that the two terms cytokinesis checkpoint (GO:0031565) and cytokinesis after mitosis (GO:0000078) were conflated in meaning. GO:0044878|GO:0044879 True biological_process owl:Class GO:0031657 biolink:NamedThing obsolete regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle OBSOLETE. Any process that controls the frequency, rate or extent of G1 cyclin-dependent protein serine/threonine kinase activity contributing to the G1/S transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl G1/S-specific regulation of cyclin-dependent protein kinase activity|regulation of cyclin-dependent protein kinase activity involved in G1/S|regulation of cyclin-dependent protein kinase activity during G1/S The term has been obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0044126 biolink:NamedThing obsolete regulation of growth of symbiont in host OBSOLETE. Any process in which the symbiont regulates the increase in its size or mass within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-04T02:10:08Z True biological_process owl:Class RO:0002349 biolink:NamedThing results in determination of tmpzr1t_l9r_go_relaxed.owl RO:0002349 external results_in_determination_of GO:0039558 biolink:NamedThing obsolete suppression by virus of host IRF7 activity by positive regulation of IRF7 sumoylation OBSOLETE. Any process in which a virus stops, prevents, or reduces IRF7-dependent gene transcription, by promoting the sumoylation of IRF7, thereby disabling its activity. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host interferon regulatory factor-7 activity by positive regulation of IRF7 sumoylation|promotion of IRF-7 SUMOylation The reason for obsoleting is that the term is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-09T04:27:57Z True biological_process owl:Class GO:0008141 biolink:NamedThing obsolete puparial glue (sensu Diptera) OBSOLETE. A glue which attaches the pupae to the substrate during metamorphosis, as in, but not restricted to, the true flies (Diptera, ncbi_taxonomy_id:7147). tmpzr1t_l9r_go_relaxed.owl puparial glue (sensu Diptera) This term was made obsolete because it represents a gene product and not a molecular function. GO:0005198|GO:0007594 True molecular_function owl:Class GO:0005936 biolink:NamedThing obsolete shmoo OBSOLETE. The characteristic projection formed in response to mating pheromone by cells of Saccharomyces and other fungi with similar life cycles. Named after the Al Capp cartoon character, whose shape it resembles. tmpzr1t_l9r_go_relaxed.owl shmoo This term was made obsolete because it represents a type of whole cell rather than a cellular component. To update annotations, consider the external ontology term 'shmoo ; FAO:0001023'. GO:0001400|GO:0005937 True cellular_component owl:Class GO:0002120 biolink:NamedThing obsolete predatory behavior OBSOLETE. Aggressive behavior involving attack on prey by a predator. tmpzr1t_l9r_go_relaxed.owl predatory aggression|predatory aggressive behavior https://github.com/geneontology/go-ontology/issues/18568 This term was obsoleted because it is outside the scope of GO. True biological_process owl:Class GO:1902594 biolink:NamedThing obsolete multi-organism nuclear import OBSOLETE. A nuclear import which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism nuclear import https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-19T15:26:43Z True biological_process owl:Class GO:0052228 biolink:NamedThing obsolete metabolism by symbiont of host protein OBSOLETE. The chemical reactions and pathways performed by an organism involving protein macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0003775 biolink:NamedThing obsolete axonemal motor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl axonemal motor activity This term was made obsolete because it includes cellular component information. GO:0003777|GO:0005930 True molecular_function owl:Class GO:0100049 biolink:NamedThing obsolete negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0015468 biolink:NamedThing obsolete colicin OBSOLETE. Plasmid-encoded bacteriocins which are produced by enteric bacteria. Exert a lethal effect on other bacteria including E. coli strains that lack the Col plasmid. Bind to a cell surface receptor and are transported into the periplasm via an energy-dependent process involving a TonB- or TolA-dependent hetero-oligomeric protein complex. Some colicins kill their target cell by inserting into the cytoplasmic membrane where they form voltage-sensitive (trans-negative) channels that depolarize and deenergize the cell, and thereby kill it. tmpzr1t_l9r_go_relaxed.owl colicin This term was made obsolete because it represents a class of gene products. GO:0046931|GO:0005102|GO:0090729|GO:0019835|GO:0005198|GO:0046930 True molecular_function owl:Class GO:0042967 biolink:NamedThing obsolete acyl-carrier-protein biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of acyl-carrier protein. tmpzr1t_l9r_go_relaxed.owl acyl-carrier-protein formation|acyl-carrier protein biosynthesis|ACP biosynthetic process|acyl carrier protein biosynthesis|acyl-carrier-protein anabolism|ACP biosynthesis|acyl carrier protein biosynthetic process|acyl-carrier-protein biosynthesis|acyl-carrier-protein synthesis The reason for obsoletion is that acyl-carrier-protein is synthesized by the ribosome like any other protein. True biological_process owl:Class GO:0016065 biolink:NamedThing obsolete humoral defense mechanism (sensu Protostomia) OBSOLETE. The specific immune response mediated by antibodies. As in, but not restricted to, the taxon Protostomia (Protostomia, ncbi_taxonomy_id:33317). tmpzr1t_l9r_go_relaxed.owl humoral defence mechanism (sensu Protostomia)|humoral defense mechanism (sensu Protostomia) This term was made obsolete because antibodies are not found in the taxon Protostomia. True biological_process owl:Class GO:0110132 biolink:NamedThing obsolete regulation of CRISPR-cas system OBSOLETE. Any process that modulates the frequency, rate or extent of a CRISPR-cas system. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16423 This term was obsoleted because it does not accurately capture the process described in the literature. kmv 2018-11-14T17:13:16Z True biological_process owl:Class GO:1904080 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter involved in neuron fate specification OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in neuron fate specification. tmpzr1t_l9r_go_relaxed.owl activation of transcription from RNA polymerase II promoter involved in neuron fate specification|upregulation of transcription from RNA polymerase II promoter involved in neuron fate specification|stimulation of global transcription from RNA polymerase II promoter involved in neuron fate specification|up-regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification|positive regulation of transcription from Pol II promoter involved in neuron fate specification|positive regulation of gene-specific transcription from RNA polymerase II promoter involved in neuron fate specification|positive regulation of transcription from RNA polymerase II promoter, global involved in neuron fate specification|activation of global transcription from RNA polymerase II promoter involved in neuron fate specification|up regulation of transcription from RNA polymerase II promoter involved in neuron fate specification|positive regulation of global transcription from Pol II promoter involved in neuron fate specification|up regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification|up-regulation of transcription from RNA polymerase II promoter involved in neuron fate specification|upregulation of global transcription from RNA polymerase II promoter involved in neuron fate specification|stimulation of transcription from RNA polymerase II promoter involved in neuron fate specification This term was obsoleted because it represents a GO-CAM model. GO:0045944|GO:0048665 kmv 2015-03-24T18:56:50Z True biological_process owl:Class GO:0003733 biolink:NamedThing obsolete ribonucleoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ribonucleoprotein GO:1990904 This term was made obsolete because it describes a cellular component rather than a molecular function. True molecular_function owl:Class GO:2000153 biolink:NamedThing obsolete regulation of flagellar cell motility OBSOLETE. Any process that modulates the frequency, rate or extent of flagellar cell motility. tmpzr1t_l9r_go_relaxed.owl regulation of flagellar cell motility This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:1902021|GO:1902019 mah 2010-10-04T12:41:02Z True biological_process owl:Class GO:1990824 biolink:NamedThing obsolete magnesium-dependent protein complex OBSOLETE. A protein complex that depends on magnesium in order for one or more of its components to remain a part of the complex. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-08-19T17:11:43Z True cellular_component owl:Class GO:0005724 biolink:NamedThing obsolete nuclear telomeric heterochromatin OBSOLETE. Heterochromatic regions of the chromosome found at the telomeres of a chromosome in the nucleus. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19086 This term was obsoleted because there is no heterochromatin at the telomere and the term had been used inconsistently. True cellular_component owl:Class GO:0045891 biolink:NamedThing obsolete negative regulation of transcription of homeotic gene (trithorax group) OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription of homeotic genes of the trithorax group. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription of homeotic gene (trithorax group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0000122 True biological_process owl:Class GO:0003900 biolink:NamedThing obsolete DNA-directed RNA polymerase I activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase I activity GO:0003899 This term was made obsolete because it represents the specific complex represented by the cellular component term 'DNA-directed RNA polymerase I complex ; GO:0005736'. True molecular_function owl:Class GO:0016299 biolink:NamedThing obsolete regulator of G-protein signaling activity OBSOLETE. Inhibits signal transduction the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. tmpzr1t_l9r_go_relaxed.owl regulator of G protein signaling activity|regulator of G-protein signaling activity|regulator of G-protein signalling activity|RGS|regulator of G protein signalling activity This term was made obsolete because it refers to a combination of a function and a process. GO:0034260|GO:0005095|GO:0045744 True molecular_function owl:Class GO:1902590 biolink:NamedThing obsolete multi-organism organelle organization OBSOLETE. An organelle organization which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism organelle organization https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-19T15:26:08Z True biological_process owl:Class GO:0046560 biolink:NamedThing obsolete scytalidopepsin B activity OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity, cleaving Phe24-Phe, but not Leu15-Tyr and Phe25-Tyr in the B chain of insulin. tmpzr1t_l9r_go_relaxed.owl SLB|scytalidopepsin B activity|Scytalidium aspartic proteinase B activity|Ganoderma lucidum carboxyl proteinase activity|Scytalidium lignicolum aspartic proteinase B|Ganoderma lucidum aspartic proteinase activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0044766 biolink:NamedThing obsolete multi-organism transport OBSOLETE. The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving more than one organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2012-12-13T16:25:50Z True biological_process owl:Class GO:0045473 biolink:NamedThing obsolete response to ethanol (sensu Insecta) OBSOLETE. A change in state or activity of an insect (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus. tmpzr1t_l9r_go_relaxed.owl response to ethanol (sensu Insecta) This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. GO:0048149 True biological_process owl:Class GO:1990740 biolink:NamedThing obsolete non-selective anion channel activity OBSOLETE. Enables the non-selective, energy-independent passage of anions across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl nonselective anion channel activity This term was made obsolete because it was added in error. pr 2015-05-11T13:25:35Z True molecular_function owl:Class GO:1900471 biolink:NamedThing obsolete negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of inositol biosynthetic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of myo-inositol biosynthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of inositol biosynthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of inositol formation by negative regulation of transcription from RNA polymerase II promoter|negative regulation of inositol synthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of vitamin Bh biosynthetic process by negative regulation of transcription from RNA polymerase II promoter|negative regulation of inositol anabolism by negative regulation of transcription from RNA polymerase II promoter|negative regulation of myo-inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter|negative regulation of vitamin Bh biosynthesis by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T08:13:23Z True biological_process owl:Class GO:0052002 biolink:NamedThing obsolete metabolism by symbiont of substance in host OBSOLETE. The chemical reactions and pathways performed by an organism in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0045094 biolink:NamedThing obsolete interleukin-18 beta subunit binding OBSOLETE. Binding to beta subunit of interleukin-18. IL-18b is a ligand non-binding chain and is required for signaling of IL-18 that binds with IL-18a. tmpzr1t_l9r_go_relaxed.owl IL-18Rb binding This term was obsoleted because interleukin-18 is a single polypeptide and has no subunits. True molecular_function owl:Class GO:0106197 biolink:NamedThing obsolete translocase activity acting on inorganic anions linked to the hydrolysis of a diphosphate OBSOLETE. Catalysis of the translocation of inorganic anions llinked to the hydrolysis of a diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.3.3.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:17:37Z True molecular_function owl:Class GO:0100046 biolink:NamedThing obsolete positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates arginine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl GO:0100046 cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0009464 biolink:NamedThing obsolete cytochrome b5 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytochrome b5 This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0016674 biolink:NamedThing obsolete oxidoreductase activity, acting on sulfur group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or a related compound, oxygen, NAD, NADP, an iron-sulfur protein, disulfide or a cytochrome. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on sulphur group of donors, other acceptors|oxidoreductase activity, acting on sulfur group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016667 True molecular_function owl:Class GO:0035950 biolink:NamedThing obsolete regulation of oligopeptide transport by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of oligopeptide transport, by regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of oligopeptide transport by regulation of transcription from Pol II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0016870 biolink:NamedThing obsolete intramolecular transferase activity, transferring other groups OBSOLETE. A grouping term for intramolecular transferases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl intramolecular transferase activity, transferring other groups This term was made obsolete because it was an unnecessary grouping term. GO:0016866 True molecular_function owl:Class GO:1900422 biolink:NamedThing obsolete positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of cellular alcohol catabolic process. tmpzr1t_l9r_go_relaxed.owl up regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter|activation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter|upregulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter|up-regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. krc 2012-04-24T05:13:25Z True biological_process owl:Class GO:0005155 biolink:NamedThing obsolete epidermal growth factor receptor activating ligand activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl EGFR activating ligand activity|EGF receptor activating ligand activity|epidermal growth factor receptor activating ligand activity GO:0005154 This term was made obsolete because it represents both a biological process and a molecular function. GO:0030297|GO:0045741 True molecular_function owl:Class GO:0030064 biolink:NamedThing obsolete cell wall inner membrane OBSOLETE. The peptidoglycan layer of the cell wall of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl cell wall inner membrane This term was made obsolete because it was defined inaccurately. GO:0009276 True cellular_component owl:Class GO:1901644 biolink:NamedThing obsolete positive regulation of tRNA methylation in response to nitrogen starvation OBSOLETE. Any process that activates or increases the frequency, rate or extent of tRNA methylation in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl upregulation of tRNA methylation in response to nitrogen starvation|up regulation of tRNA methylation in response to nitrogen starvation|activation of tRNA methylation in response to nitrogen starvation|up-regulation of tRNA methylation in response to nitrogen starvation al 2012-11-16T14:44:12Z True biological_process owl:Class GO:0009463 biolink:NamedThing obsolete cytochrome b/b6 OBSOLETE. Diheme cytochrome b; cytochrome b has the hemes b(562) and b(566) and is a component of the mitochondrial respiratory chain complex III. Cytochrome b6 is a component of bc complex acting between photosystems II and I of photosynthesis. tmpzr1t_l9r_go_relaxed.owl cytochrome b/b6 GO:0045158 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0071427 biolink:NamedThing obsolete mRNA-containing ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl mRNA-containing ribonucleoprotein complex export from cell nucleus|mRNA-containing ribonucleoprotein complex nucleus export|mRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm|mRNA-containing RNP export from nucleus https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. GO:0006406 mah 2009-12-16T10:13:59Z True biological_process owl:Class GO:1990560 biolink:NamedThing obsolete DNA methyltransferase binding OBSOLETE. Binding to a DNA methyltransferase. tmpzr1t_l9r_go_relaxed.owl DNA methyltransferase binding This term was obsoleted at the TermGenie Gatekeeper stage. sl 2014-11-19T16:30:28Z True molecular_function owl:Class GO:0016541 biolink:NamedThing obsolete intein OBSOLETE. Intervening protein sequence excised from a protein precursor in protein splicing; inteins catalyze their own excision and many also possess endonuclease activity. tmpzr1t_l9r_go_relaxed.owl intein This term was made obsolete because it refers to a protein sequence feature. GO:0016539|GO:0004519 True molecular_function owl:Class GO:0008149 biolink:NamedThing obsolete para-aminobenzoic acid (PABA) synthase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl para-aminobenzoic acid (PABA) synthase This term was made obsolete because it refers to two different functions, a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered. GO:0046820|GO:0008696 True molecular_function owl:Class GO:0006130 biolink:NamedThing obsolete 6-phosphofructokinase reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl 6-phosphofructokinase reduction This term was made obsolete because the term string was ambiguous and the term may represent a molecular function. GO:0003872|GO:0022900 True biological_process owl:Class GO:0015282 biolink:NamedThing obsolete NADPH oxidase-associated cytochrome b558 hydrogen channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl NADPH oxidase-associated cytochrome b558 proton channel|NADPH oxidase-associated cytochrome b558 hydrogen channel activity This term was made obsolete because it describes a gene product rather than a function. True molecular_function owl:Class GO:0042290 biolink:NamedThing obsolete URM1 hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl URM1 hydrolase activity This term was made obsolete because it cannot be determined what its intended meaning was, because the term name is not found in the literature. GO:0019783 True molecular_function owl:Class GO:0023049 biolink:NamedThing obsolete signal initiation by protein/peptide mediator OBSOLETE. The process in which a protein/peptide signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by protein/peptide mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0048018|GO:0038023|GO:0007165 2010-02-16T09:30:50Z True biological_process owl:Class GO:0030823 biolink:NamedThing obsolete regulation of cGMP metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving cGMP. tmpzr1t_l9r_go_relaxed.owl regulation of cGMP metabolism The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0046803 biolink:NamedThing obsolete reduction of virulence OBSOLETE. Any process that stops, prevents or reduces the severity of viral infection and subsequent disease. tmpzr1t_l9r_go_relaxed.owl reduction of virulence This term was made obsolete because 'virulence' is not a biological process; however, alteration of virulence also does not fit under 'regulation of biological quality ; GO:0065008' because it is a product both of the genotype/phenotype of the infecting organism and the genotype/phenotype of the organism being infected and varies by individual within a species both for the infecting organism and the infected organism. True biological_process owl:Class GO:1904112 biolink:NamedThing obsolete positive regulation of plus-end directed microfilament motor activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of plus-end directed microfilament motor activity. tmpzr1t_l9r_go_relaxed.owl upregulation of plus-end directed microfilament motor activity|up-regulation of plus-end directed microfilament motor activity|up regulation of plus-end directed actin filament motor activity|up-regulation of plus-end directed actin filament motor activity|activation of plus-end directed actin filament motor activity|upregulation of barbed-end directed actin-filament motor activity|positive regulation of barbed-end directed actin-filament motor activity|up-regulation of plus-end directed actin-filament motor activity|up regulation of barbed-end directed actin-filament motor activity|up regulation of plus-end directed actin-filament motor activity|activation of barbed-end directed actin-filament motor activity|positive regulation of plus-end directed actin-filament motor activity|activation of plus-end directed actin-filament motor activity|upregulation of plus-end directed actin-filament motor activity|up-regulation of barbed-end directed actin-filament motor activity|activation of plus-end directed microfilament motor activity|positive regulation of plus-end directed actin filament motor activity|up regulation of plus-end directed microfilament motor activity|upregulation of plus-end directed actin filament motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140659 kmv 2015-04-03T18:28:35Z True biological_process owl:Class GO:0061393 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to osmotic stress OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0045944|GO:0071470 dph 2011-12-13T08:58:20Z True biological_process owl:Class GO:1904721 biolink:NamedThing obsolete negative regulation of mRNA endonucleolytic cleavage involved in unfolded protein response OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of mRNA endonucleolytic cleavage involved in unfolded protein response. tmpzr1t_l9r_go_relaxed.owl down-regulation of XBP1 mRNA cleavage|down-regulation of HAC1-type intron splice site recognition and cleavage|downregulation of IRE1-mediated XBP-1 mRNA cleavage|inhibition of HAC1-type intron splice site recognition and cleavage|downregulation of mRNA endonucleolytic cleavage involved in unfolded protein response|inhibition of IRE1-mediated XBP-1 mRNA cleavage|down regulation of mRNA endonucleolytic cleavage involved in unfolded protein response|down regulation of XBP1 mRNA cleavage|downregulation of HAC1-type intron splice site recognition and cleavage|negative regulation of IRE1-mediated XBP-1 mRNA cleavage|inhibition of HAC1 mRNA cleavage|down-regulation of HAC1 mRNA cleavage|down-regulation of IRE1-mediated XBP-1 mRNA cleavage|negative regulation of XBP1 mRNA cleavage|down regulation of HAC1 mRNA cleavage|down regulation of HAC1-type intron splice site recognition and cleavage|negative regulation of HAC1 mRNA cleavage|downregulation of XBP1 mRNA cleavage|inhibition of XBP1 mRNA cleavage|down-regulation of mRNA endonucleolytic cleavage involved in unfolded protein response|inhibition of mRNA endonucleolytic cleavage involved in unfolded protein response|down regulation of IRE1-mediated XBP-1 mRNA cleavage|negative regulation of HAC1-type intron splice site recognition and cleavage|downregulation of HAC1 mRNA cleavage The reason for obsoletion is that this process being regulated (GO:0070055 mRNA endonucleolytic cleavage involved in unfolded protein response) was obsoleted. GO:1903895 bf 2015-10-08T14:52:55Z True biological_process owl:Class GO:0000191 biolink:NamedThing obsolete activation of MAPKKK (pseudohyphal growth) OBSOLETE. Upregulation of MAPKKK activity in the context of regulating pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0015429 biolink:NamedThing obsolete peroxisomal fatty acyl transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxisomal fatty acyl transporter This term was made obsolete because it describes a gene product and it contains both component and function information. True molecular_function owl:Class GO:0100024 biolink:NamedThing obsolete regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates carbohydrate metabolic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052409 biolink:NamedThing obsolete metabolism by organism of cell wall cellulose in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving cellulose in the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of cell wall cellulose in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0046758 biolink:NamedThing obsolete lytic virus budding from Golgi membrane OBSOLETE. A form of viral release in which the nucleocapsid evaginates from the host Golgi membrane system, resulting in envelopment of the virus and cell lysis. tmpzr1t_l9r_go_relaxed.owl lytic viral budding from Golgi membrane|lytic Golgi membrane viral budding|lytic virus budding from Golgi membrane This term was made obsolete because it does not appear to correspond to a real biological process. True biological_process owl:Class GO:0039598 biolink:NamedThing obsolete induction by virus of host nuclear polyadenylation-dependent mRNA catabolic process OBSOLETE. The process in which a virus increases the frequency, rate or extent of the breakdown of host messenger RNA (mRNA) initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA. tmpzr1t_l9r_go_relaxed.owl induction by virus of host nuclear polyadenylation-dependent mRNA catabolic process|virus-mediated host mRNA decay by hyperadenylation|induction by virus of host nuclear poly(A)-dependent mRNA catabolic process This term was made obsolete because it is unclear what role the viral protein is playing in this process. and there is insufficient evidence to use this term for annotation. bf 2012-07-04T04:44:16Z True biological_process owl:Class GO:0001311 biolink:NamedThing obsolete formation of extrachromosomal circular rDNA by homologous recombination involved in replicative cell aging OBSOLETE. Excision from the chromosome and circularization of DNA molecules encoding ribosomal RNA in dividing cells as they age. tmpzr1t_l9r_go_relaxed.owl formation of extrachromosomal circular rDNA by homologous recombination during replicative cell ageing|formation of extrachromosomal circular ribosomal DNA by homologous recombination during replicative cell aging|assembly of extrachromosomal circular rDNA by homologous recombination involved in replicative cell aging|formation of extrachromosomal circular rDNA by homologous recombination during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0008539 biolink:NamedThing obsolete proteasome inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the proteasome complex. The proteasome complex performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis. tmpzr1t_l9r_go_relaxed.owl proteasome inhibitor activity|PI-31 The term was made obsolete because 'proteasome' is not a valid molecular function term. GO:0061136|GO:0004866 True molecular_function owl:Class GO:0072481 biolink:NamedThing obsolete detection of stimulus involved in mitotic spindle orientation checkpoint OBSOLETE. The series of events in which information about whether the spindle is correctly oriented is received and converted into a molecular signal, contributing to a mitotic cell cycle spindle orientation checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle spindle orientation checkpoint sensor process|detection of stimulus involved in mitotic cell cycle spindle orientation checkpoint|sensing involved in mitotic cell cycle spindle orientation checkpoint|mitotic cell cycle spindle orientation checkpoint sensor mechanism https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T12:11:52Z True biological_process owl:Class GO:0052439 biolink:NamedThing obsolete modulation by organism of defense-related symbiont cell wall callose deposition OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont cell wall callose deposition This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009468 biolink:NamedThing obsolete diheme class I cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl diheme class I cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0006088 biolink:NamedThing obsolete acetate to acetyl-CoA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl acetate to acetyl-CoA This term was made obsolete because it represents a function rather than a process. GO:0003987 True biological_process owl:Class GO:0022815 biolink:NamedThing obsolete large uncharged polar molecule transmembrane transporter activity OBSOLETE. Catalysis of the transfer of a large uncharged polar molecule from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl large uncharged polar molecule transmembrane transporter activity GO:0022857 This term was made obsolete because 'large uncharged polar molecule' is not a useful chemical grouping term. True molecular_function owl:Class GO:0004717 biolink:NamedThing obsolete focal adhesion kinase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl focal adhesion kinase activity|FAK GO:0004713 This term was made obsolete because it represents a gene product, and because the gene was named after its location of action rather than after its molecular function. True molecular_function owl:Class GO:0051411 biolink:NamedThing obsolete ALP binding OBSOLETE. Interacting selectively and non-covalently wih ALP, actinin-associated LIM protein of the Z band. ALP is a PDZ/LIM domain protein found in the Z band. tmpzr1t_l9r_go_relaxed.owl ALP binding|actinin-associated LIM protein binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0052525 biolink:NamedThing obsolete positive regulation by host of symbiont signal transduction pathway OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl up-regulation by host of symbiont signal transduction pathway|activation by host of symbiont signal transduction pathway|stimulation by host of symbiont signal transduction pathway|upregulation by host of symbiont signal transduction pathway|up regulation by host of symbiont signal transduction pathway The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0052412 biolink:NamedThing obsolete metabolism by host of symbiont cell wall pectin OBSOLETE. The chemical reactions and pathways performed by an organism involving pectin in the cell wall of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0001322 biolink:NamedThing obsolete age-dependent response to oxidative stress involved in replicative cell aging OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring in dividing cells as they age as a result of oxidative stress, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl age-dependent response to oxidative stress during replicative cell aging|age-dependent response to oxidative stress during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class RO:0002412 biolink:NamedThing immediately causally upstream of tmpzr1t_l9r_go_relaxed.owl RO:0002412 external immediately_causally_upstream_of GO:0044136 biolink:NamedThing obsolete development of symbiont on or near host rhizosphere OBSOLETE. The progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term represents both a process and a component jl 2009-08-04T04:18:35Z True biological_process owl:Class GO:1900527 biolink:NamedThing obsolete regulation of nucleus size involved in G1 to G0 transition OBSOLETE. Any regulation of nucleus size that is involved in G1 to G0 transition. tmpzr1t_l9r_go_relaxed.owl regulation of nucleus size involved in cell cycle quiescence|regulation of nuclear volume involved in G1/G0 transition|regulation of nuclear volume involved in cell cycle quiescence|regulation of nucleus size involved in G1 to G0 transition|regulation of nuclear size involved in G1/G0 transition|regulation of nuclear volume involved in establishment of cell quiescence|regulation of nucleus size involved in establishment of cell quiescence|regulation of nuclear size involved in cell cycle quiescence|regulation of nuclear volume involved in G1 to G0 transition|regulation of nuclear size involved in G1 to G0 transition|regulation of nucleus size involved in stationary phase|regulation of nucleus size involved in G1/G0 transition|regulation of nuclear volume involved in stationary phase|regulation of nuclear size involved in stationary phase|regulation of nuclear size involved in establishment of cell quiescence This term was made obsolete because it represents a phenotype. al 2012-05-08T10:39:01Z True biological_process owl:Class GO:1990721 biolink:NamedThing obsolete prostatic acid phosphatase complex OBSOLETE. A protein complex that is capable of dephosphorylation of alky, aryl and acyl orthophosphate monoesters and phosphorylated proteins. Optimal activity in acidic environment (pH 4-6). In mammals it consists of a homodimer of ACPP. tmpzr1t_l9r_go_relaxed.owl prostatic acid phosphatase complex|ACPP homodimer complex|PAP complex This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2015-04-01T09:43:14Z True cellular_component owl:Class OIO:hasOBONamespace biolink:NamedThing has_obo_namespace tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0038077 biolink:NamedThing obsolete MAP kinase kinase kinase activity involved in innate immune response OBSOLETE. Catalysis of the phosphorylation and activation of a MAP kinase kinase (MAPKK), as part of a MAPK signaling cascade that contributes to an innate immune response. tmpzr1t_l9r_go_relaxed.owl MAP3K activity involved in innate immune response|MAPKKK activity involved in innate immune response This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:35:52Z True molecular_function owl:Class GO:0000259 biolink:NamedThing obsolete intracellular nucleoside transmembrane transporter activity OBSOLETE. Enables the directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide) within a cell. tmpzr1t_l9r_go_relaxed.owl intracellular nucleoside transmembrane transporter activity This term was made obsolete because it contains component and function information. GO:0005622|GO:0005337 True molecular_function owl:Class GO:0007241 biolink:NamedThing obsolete inactivation of Hog1 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inactivation of Hog1 This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:0075073 biolink:NamedThing obsolete autophagy of symbiont cells on or near host surface OBSOLETE. The process in which symbiont cells digest parts of their own cytoplasm, occurring when the symbiont is on or near its host surface. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term did not represent any specific host/symbiont process. True biological_process owl:Class GO:0006329 biolink:NamedThing obsolete satellite DNA binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl satellite DNA binding GO:0003696 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0008563 biolink:NamedThing obsolete alpha-factor sex pheromone exporter OBSOLETE. Catalysis of the reaction: ATP + H2O + alpha-factor(in) = ADP + phosphate + alpha-factor(out). The export of the alpha-factor sex pheromone by an ABC-type (ATP-binding cassette-type) ATPase, characterized by the presence of two similar ATP-binding domains, that does not undergo phosphorylation during the transport process. tmpzr1t_l9r_go_relaxed.owl alpha-factor-transporting ATPase|alpha-factor sex pheromone exporter This term was made obsolete because this function does not exist; alpha-factor is secreted by the classical secretion pathway and not exported. True molecular_function owl:Class GO:0016729 biolink:NamedThing obsolete oxidoreductase activity, acting on CH2 groups, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, NAD, NADP or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on CH2 groups, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016725 True molecular_function owl:Class GO:0008025 biolink:NamedThing obsolete diazepam binding inhibitor activity OBSOLETE. The diazepam binding inhibitor is a 10kDa 86-residue polypeptide that acts as an endogenous ligand for a mitochondrial receptor (formerly regarded as a peripheral benzodiazepine binding site) in steroidogenic cells and regulates stimulation of steroidogenesis by tropic hormones. It also binds to the GABA-A receptor and modulates glucose-dependent insulin secretion and synthesis of acyl-CoA esters. tmpzr1t_l9r_go_relaxed.owl diazepam binding inhibitor activity|diazepam-binding inhibitor activity|DBI This term was made obsolete because it represents a multifunctional gene product. GO:0050809|GO:0050796|GO:0050810|GO:0050812|GO:0004857|GO:0030156|GO:0050811 True molecular_function owl:Class GO:0009471 biolink:NamedThing obsolete class III cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class III cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0052521 biolink:NamedThing obsolete positive regulation by host of symbiont phagocytosis OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by host of symbiont phagocytosis|up-regulation by host of symbiont phagocytosis|up regulation by host of symbiont phagocytosis|stimulation by host of symbiont phagocytosis|activation by host of symbiont phagocytosis https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0004231 biolink:NamedThing obsolete insulysin activity OBSOLETE. Catalysis of the degradation of insulin, glucagon and other polypeptides. No action on proteins. tmpzr1t_l9r_go_relaxed.owl insulin-degrading neutral proteinase activity|insulinase activity|insulin proteinase activity|insulysin activity|insulin protease activity|insulin-glucagon protease activity|IDE|insulin-specific protease activity|metalloinsulinase activity|insulin-degrading enzyme activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005565 biolink:NamedThing obsolete mitochondrial tRNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mitochondrial tRNA Note that this term was deleted from GO rather than being made obsolete and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0046240 biolink:NamedThing obsolete xylene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene. tmpzr1t_l9r_go_relaxed.owl xylene biosynthesis|xylene synthesis|xylene anabolism|xylene formation|xylene biosynthetic process GO:0018948 This term was made obsolete because xylene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:1900536 biolink:NamedThing obsolete regulation of glucose homeostasis OBSOLETE. Any process that modulates the frequency, rate or extent of glucose homeostasis. tmpzr1t_l9r_go_relaxed.owl regulation of glucose homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. hjd 2012-05-10T06:52:21Z True biological_process owl:Class GO:0090418 biolink:NamedThing obsolete positive regulation of transcription involved in S-phase of mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription of target genes that are transcribed as part of the S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl activation of transcription involved in S phase of mitotic cell cycle|up-regulation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle|activation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle|activation of S phase specific transcription in the mitotic cell cycle|up-regulation of transcription involved in S phase of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle|positive regulation of transcription involved in S-phase of mitotic cell cycle|positive regulation of S phase specific transcription in the mitotic cell cycle|up-regulation of S phase specific transcription in the mitotic cell cycle This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'. GO:0000083|GO:0045944 tb 2011-10-26T03:54:00Z True biological_process owl:Class GO:0042563 biolink:NamedThing obsolete importin alpha-subunit nuclear export complex OBSOLETE. A protein complex which usually consists of three components, e.g. in Xenopus, the importin alpha-subunit/CAS/Ran, and which functions to transport the importin alpha-subunit out of the nucleus through the nuclear pore. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that these terms include the substrate of the reaction. True cellular_component owl:Class GO:1902592 biolink:NamedThing obsolete multi-organism membrane budding OBSOLETE. A membrane budding which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism membrane budding Obsoleted because it was a grouping term for a viral process that was incorrectly under 'multi-organism cellular process'. The children terms have been moved under 'viral process', so that this grouping term is not necessary anymore. jl 2013-12-19T15:26:25Z True biological_process owl:Class GO:0018512 biolink:NamedThing obsolete 1,6-dihydroxy-5-methylcyclohexa-2,4-dienecarboxylate dehydrogenase activity OBSOLETE. Catalysis of the reaction: 1,6-dihydroxy-5-methylcyclohexa-2,4-dienecarboxylate + NAD+ = 3-methylcatechol + CO2 + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 1,6-dihydroxy-5-methylcyclohexa-2,4-dienecarboxylate dehydrogenase activity|1,2-dihydroxy-3-methylcyclohexa-3,5-diene-carboxylate dehydrogenase activity UM-BBD_reactionID:r0216 This term was made obsolete because, according to the Enzyme Commission, there is no evidence that this enzymatic activity exists. True molecular_function owl:Class GO:0008580 biolink:NamedThing obsolete cytoskeletal regulator activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytoskeletal regulator activity This term was made obsolete because 'cytoskeleton' is not an activity, and regulation of its distribution or modification belongs in the process ontology. GO:0007010 True molecular_function owl:Class GO:0052528 biolink:NamedThing obsolete upregulation by organism of symbiont programmed cell death OBSOLETE. Any process by which an organism increases the frequency, rate or extent of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl enhancement of symbiont programmed cell death by organism|upregulation by organism of symbiont programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0019157 biolink:NamedThing obsolete malate oxidase activity OBSOLETE. Catalysis of the reaction: (S)-malate + O(2) = H(2)O(2) + oxaloacetate. tmpzr1t_l9r_go_relaxed.owl (S)-malate:oxygen oxidoreductase activity|malic dehydrogenase II|malic oxidase activity|FAD-dependent malate oxidase activity This term is slated for obsoletion because RHEA indicates there is not enough experimental evidence. True molecular_function owl:Class GO:0001313 biolink:NamedThing obsolete formation of extrachromosomal circular DNA involved in replicative cell aging OBSOLETE. Excision from the chromosome and circularization of a region of chromosomal DNA, generally, but not always, via homologous recombination between direct tandem repeats, in dividing cells as they age. tmpzr1t_l9r_go_relaxed.owl formation of extrachromosomal circular DNA during replicative cell aging|assembly of extrachromosomal circular DNA involved in replicative cell aging|formation of extrachromosomal circular DNA during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:1990642 biolink:NamedThing obsolete response to castration OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a castration stimulus, deprivation of gonads. tmpzr1t_l9r_go_relaxed.owl response to castration This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-02-11T18:53:04Z True biological_process owl:Class GO:0009458 biolink:NamedThing obsolete cytochrome OBSOLETE. A hemeprotein whose characteristic mode of action involves transfer of reducing equivalents associated with a reversible change in oxidation state of the prosthetic group. This redox change involves a single electron, reversible equilibrium between the Fe(II) and Fe(III) states of the central iron atom. tmpzr1t_l9r_go_relaxed.owl cytochrome This term was made obsolete because it represents a gene product. GO:0004129 True molecular_function owl:Class GO:0009108 biolink:NamedThing obsolete coenzyme biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl coenzyme synthesis|coenzyme anabolism|coenzyme biosynthesis|coenzyme formation|coenzyme and prosthetic group biosynthetic process|coenzyme and prosthetic group biosynthesis 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group biosynthetic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0051814 biolink:NamedThing obsolete movement in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism or its progeny spreads from one location to another within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl movement within other organism during symbiotic interaction|movement in other organism during symbiotic interaction This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0006299 biolink:NamedThing obsolete short patch mismatch repair system OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site. tmpzr1t_l9r_go_relaxed.owl short patch mismatch repair system This term was made obsolete because 'short patch' is a relative statement, often used ambiguously, and does not necessarily represent a process; the processes it can stand for are base excision repair, nucleotide excision repair, transcription-coupled nucleotide excision repair, and mismatch repair. GO:0006289|GO:0006284 True biological_process owl:Class GO:0003750 biolink:NamedThing obsolete cell cycle regulator OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cell cycle regulator GO:0051726 This term was made obsolete because it does not represent a single molecular function. True molecular_function owl:Class GO:0015427 biolink:NamedThing obsolete ABC-type efflux porter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ABC-type efflux porter activity This term was made obsolete because ABC transporters are a protein family rather than a functional grouping. GO:0043190|GO:0042626 True molecular_function owl:Class GO:0035391 biolink:NamedThing obsolete maintenance of chromatin silencing at silent mating-type cassette OBSOLETE. The maintenance of chromatin in a transcriptionally silent state such as heterochromatin at silent mating-type loci. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19301 This term was obsoleted because it represents a phenotype. bf 2010-03-22T10:25:14Z True biological_process owl:Class GO:0005735 biolink:NamedThing obsolete box H + ACA snoRNP protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl box H + ACA snoRNP protein This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:1990495 biolink:NamedThing obsolete actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly OBSOLETE. An actin filament organization process that contributes to actomyosin contractile ring assembly during mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-09-25T09:19:27Z True biological_process owl:Class GO:2000775 biolink:NamedThing obsolete histone H3-S10 phosphorylation involved in chromosome condensation OBSOLETE. Any histone H3-S10 phosphorylation that is involved in chromosome condensation. tmpzr1t_l9r_go_relaxed.owl histone H3 phosphorylation at S10 of chromosome condensation|histone H3-S10 phosphorylation of chromosome condensation https://github.com/geneontology/go-ontology/issues/22321 This term was obsoleted because it is a molecular function represented as a biological process. mah 2011-06-22T03:58:00Z True biological_process owl:Class GO:0030074 biolink:NamedThing obsolete thylakoid (sensu Proteobacteria) OBSOLETE. A thylakoid; as in, but not restricted to, the purple bacteria and relatives (Proteobacteria, ncbi_taxonomy_id:1224). tmpzr1t_l9r_go_relaxed.owl thylakoid (sensu Proteobacteria) This term was made obsolete because thylakoids are not found in organisms of the Phylum Proteobacteria. GO:0042716 True cellular_component owl:Class GO:0006894 biolink:NamedThing obsolete Golgi to secretory vesicle transport OBSOLETE. The directed movement of proteins from the Golgi to one of two types of secretory vesicle. Continuously secreted proteins are sorted into transport vesicles that fuse with the plasma membrane, releasing their contents by exocytosis. Specialized secretory cells have a second secretory pathway in which soluble proteins and other substances are initially stored in secretory vesicles for later release. tmpzr1t_l9r_go_relaxed.owl Golgi to secretory vesicle transport, vesicle-mediated|Golgi to secretory vesicle transport This term was made obsolete because it mixes two processes that can be better captured in separate terms. GO:0055108|GO:0055107 True biological_process owl:Class GO:0039589 biolink:NamedThing obsolete suppression by virus of host TAP complex OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of the host TAP complex, a heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). The TAP complex functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum, where they are loaded onto the MHC class I. By inhibiting the TAP complex, the virus prevents viral particles being presented at the cell surface, and thus evades the host immune response. tmpzr1t_l9r_go_relaxed.owl inhibition of host TAP by virus VZ:817 This term was obsoleted because this type of process is now represented by the actual function inhibited. GO:0039588 bf 2012-06-22T14:42:06Z True biological_process owl:Class GO:0042739 biolink:NamedThing obsolete endogenous drug catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a drug that has originated internally within the cell or organism. tmpzr1t_l9r_go_relaxed.owl endogenous drug degradation|endogenous drug breakdown|endogenous drug catabolism https://github.com/geneontology/go-ontology/issues/21819 The reason for obsoletion is that there is no evidence that this process exists as a drug is by definition exogenous. True biological_process owl:Class GO:0071426 biolink:NamedThing obsolete ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl ribonucleoprotein complex export from cell nucleus|ribonucleoprotein complex nucleus export|ribonucleoprotein complex transport from nucleus to cytoplasm|RNP export from nucleus https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. mah 2009-12-16T10:13:01Z True biological_process owl:Class GO:0008342 biolink:NamedThing obsolete larval feeding behavior (sensu Insecta) OBSOLETE. Feeding behavior in an insect larva. tmpzr1t_l9r_go_relaxed.owl larval feeding behavior (sensu Insecta) GO:0030536 This term was made obsolete because there is no clear difference between the sensu Drosophila term and the generic term. True biological_process owl:Class GO:0016550 biolink:NamedThing obsolete insertion or deletion editing OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place during or after transcription. tmpzr1t_l9r_go_relaxed.owl insertion/deletion editing|insertion or deletion editing This term was made obsolete because it represents two separate processes (insertion and deletion). GO:0070705|GO:0070706 True biological_process owl:Class GO:1905105 biolink:NamedThing obsolete cellular response to ouabain OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ouabain stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-04-04T19:08:16Z True biological_process owl:Class GO:0075051 biolink:NamedThing obsolete negative regulation of symbiont cell wall strengthening involved in entry into host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont cell wall strengthening during entry into host The reason for the obsoletion is that there is no evidence that those processes exist. True biological_process owl:Class GO:0007578 biolink:NamedThing obsolete aging dependent sterility (sensu Saccharomyces) OBSOLETE. A haploid's inability to mate due to the loss of silencing at the mating-type loci, resulting in expression of both of the normally silent mating-type cassettes. tmpzr1t_l9r_go_relaxed.owl aging dependent sterility (sensu Saccharomyces) This term was made obsolete because it reflected a trait or phenotype. GO:0030466 True biological_process owl:Class GO:1905882 biolink:NamedThing obsolete other organism cell wall OBSOLETE. Any cell wall that is part of a other organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. pga 2017-01-31T10:57:28Z True cellular_component owl:Class GO:0051437 biolink:NamedThing obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition OBSOLETE. Any process that activates, maintains or increases the rate of ubiquitin ligase activity that contributes to the regulation of the mitotic cell cycle phase transition. tmpzr1t_l9r_go_relaxed.owl activation of ubiquitin ligase activity during mitotic cell cycle|up-regulation of ubiquitin ligase activity during mitotic cell cycle|upregulation of ubiquitin ligase activity during mitotic cell cycle|stimulation of ubiquitin ligase activity during mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle|mitotic ubiquitin ligase activator|mitotic SCF complex activator|positive regulation of ubiquitin ligase activity during mitotic cell cycle|up regulation of ubiquitin ligase activity during mitotic cell cycle https://github.com/geneontology/go-ontology/issues/15196 This term was obsoleted because it should be captured as a GO-CAM model. True biological_process owl:Class GO:0005555 biolink:NamedThing obsolete blood group antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl blood group antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0075212 biolink:NamedThing obsolete positive regulation of transmembrane receptor-mediated cAMP signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its transmembrane receptor-mediated cAMP signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont transmembrane receptor-mediated cAMP signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0005755 biolink:NamedThing obsolete hydrogen-transporting ATP synthase, coupling factor CF(0) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl hydrogen-transporting ATP synthase, coupling factor CF(0) This term was made obsolete because more specific terms were created. GO:0045263 True cellular_component owl:Class GO:0023038 biolink:NamedThing obsolete signal initiation by diffusible mediator OBSOLETE. The process in which a diffusible signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by diffusible mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0007165|GO:0048018|GO:0038023|GO:0038001 2010-02-16T09:30:50Z True biological_process owl:Class GO:0003811 biolink:NamedThing obsolete complement activity OBSOLETE. Any of a set of activities involved in the complement cascade. tmpzr1t_l9r_go_relaxed.owl complement activity This term was made obsolete because it refers to involvement in a biological process. GO:0006956 True molecular_function owl:Class GO:0019790 biolink:NamedThing obsolete ubiquitin-like hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ubiquitin-like hydrolase activity This term was made obsolete because it cannot be determined what its intended meaning was, because the term name is not found in the literature. GO:0019783 True molecular_function owl:Class GO:0005670 biolink:NamedThing obsolete transcription-activating factor, 30kD OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transcription-activating factor, 30kD GO:0005669 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0071733 biolink:NamedThing obsolete transcriptional activation by promoter-enhancer looping OBSOLETE. The formation and maintenance of DNA loops that juxtapose the promoter and enhancer regions of RNA polymerase II-transcribed genes and activate transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl long-range enhancer-promoter communication https://github.com/geneontology/go-ontology/issues/20204 This term was obsoleted because it was defined like a molecular function. GO:0045893 mah 2010-03-19T02:01:19Z True biological_process owl:Class GO:0035422 biolink:NamedThing obsolete activation of MAPKKK activity involved in innate immune response OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18000 This term was obsoleted because it should be represented as a GO-CAM model. bf 2010-03-29T01:27:38Z True biological_process owl:Class GO:0052536 biolink:NamedThing obsolete positive regulation by organism of systemic acquired resistance in symbiont OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of systemic acquired resistance in the symbiont organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of systemic acquired resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0051816 biolink:NamedThing obsolete acquisition of nutrients from other organism during symbiotic interaction OBSOLETE. The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented an unnecessary grouping class. True biological_process owl:Class GO:0030009 biolink:NamedThing obsolete complement factor H activity OBSOLETE. A cofactor for the serine protease complement factor I. tmpzr1t_l9r_go_relaxed.owl complement factor H activity This term was made obsolete because it represents a gene product. GO:0006956 True molecular_function owl:Class GO:0008573 biolink:NamedThing obsolete peroxisome-assembly ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. ATP hydrolysis to import and assemble peroxisome components into the organelle. tmpzr1t_l9r_go_relaxed.owl peroxisome-assembly ATPase activity GO:0016887 This term was made obsolete because it incorporates process information. GO:0007031 True molecular_function owl:Class GO:0016582 biolink:NamedThing obsolete non-covalent chromatin modification OBSOLETE. The alteration of DNA or protein in chromatin by the non-covalent addition or removal of chemical groups. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it was added in error; its usefulness is unclear. True biological_process owl:Class GO:0030460 biolink:NamedThing obsolete nuclear translocation of MAPK (mating sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0015061 biolink:NamedThing obsolete red-sensitive opsin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl red-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0009881|GO:0016918|GO:0046876|GO:0009585|GO:0007603|GO:0016021 True molecular_function owl:Class GO:0005182 biolink:NamedThing obsolete lipopeptide hormone OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lipopeptide hormone This term was made obsolete because it describes a type of hormone rather than a molecular function. GO:0005179 True molecular_function owl:Class GO:0021920 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of neuronal precursors to association neurons in the dorsal spinal cord. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0021519|GO:0006357 True biological_process owl:Class GO:0030602 biolink:NamedThing obsolete chymosin activity OBSOLETE. Catalysis of the lysis of peptide bonds with broad specificity similar to that of pepsin A. Clots milk by cleavage of a single Ser-Phe-l-Met-Ala bond in kappa-casein. tmpzr1t_l9r_go_relaxed.owl rennin|chymosin activity|rennin (but this should be avoided since it leads to confusion with renin) GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0045331 biolink:NamedThing obsolete coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity OBSOLETE. Catalysis of the reaction: coenzyme-M 7-mercaptoheptanoylthreonine-phosphate heterodisulfide + H2 = coenzyme-M + N-(7-mercaptoheptanoyl)threonine O3-phosphate. tmpzr1t_l9r_go_relaxed.owl coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulphide hydrogenase activity|heterodisulfide reductase activity|coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity This term was made obsolete because it represents two activities. GO:0051912|GO:0051911 True molecular_function owl:Class GO:0035465 biolink:NamedThing obsolete regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry OBSOLETE. Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway that is involved in the determination of the lateral plate mesoderm with respect to its left and right halves. tmpzr1t_l9r_go_relaxed.owl regulation of transforming growth factor beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of TGFbeta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of TGF-beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of TGFbeta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|regulation of TGF-beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry GO:1900175 This term was made obsolete because it describes regulation of the nodal signaling pathway. Nodal proteins are members of the TGF-beta superfamily, but are distinct from TGF-beta proteins themselves. TGF-beta proteins are not currently known to regulate left/right asymmetry in the lateral mesoderm. bf 2010-04-19T01:36:23Z True biological_process owl:Class GO:0052245 biolink:NamedThing obsolete negative energy taxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism on or near a second organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative energy taxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0070868 biolink:NamedThing obsolete heterochromatin organization involved in chromatin silencing OBSOLETE. Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin and contributes to chromatin silencing. tmpzr1t_l9r_go_relaxed.owl heterochromatin organisation involved in chromatin silencing https://github.com/geneontology/go-ontology/issues/22046 This term was obsoleted because it was not clearly defined, and used incorrectly. mah 2009-08-20T12:45:52Z True biological_process owl:Class GO:1905878 biolink:NamedThing obsolete invadopodium disassembly OBSOLETE. The disaggregation of an invadopodium into its constituent components. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-01-27T20:44:16Z True biological_process owl:Class GO:0100057 biolink:NamedThing obsolete regulation of phenotypic switching by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates phenotypic switching. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0060850 biolink:NamedThing obsolete regulation of transcription involved in cell fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0045165|GO:0006357 dph 2009-08-12T11:40:09Z True biological_process owl:Class GO:0110133 biolink:NamedThing obsolete negative regulation of CRISPR-cas system OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of a CRISPR-cas system. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16423 This term was obsoleted because it does not accurately capture the process described in the literature. GO:0098672 kmv 2018-11-14T17:23:07Z True biological_process owl:Class GO:0015560 biolink:NamedThing obsolete L-idonate/D-gluconate:hydrogen symporter activity OBSOLETE. Catalysis of the reaction: (L-idonate or D-gluconate)(out) + H+(out) = (L-iodonate or D-gluconate)(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl L-idonate/D-gluconate:hydrogen symporter activity|L-idonate/D-gluconate:proton symporter This term was made obsolete because it represents a multifunctional gene product. GO:0015295|GO:0015128|GO:0015568 True molecular_function owl:Class GO:0006328 biolink:NamedThing obsolete AT binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl AT binding GO:0003680 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0005733 biolink:NamedThing obsolete small nucleolar RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small nucleolar RNA|snoRNA This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0052033 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism activates, maintains or increases the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl PTI|MAMP dependent induction of host innate immunity|PAMP dependent induction of host innate immunity|general elicitor-dependent induction of host innate immunity|MAMP dependent activation of host innate immunity|PAMP dependent activation of host innate immunity|pattern-triggered immunity|pathogen-associated molecular pattern dependent activation by organism of host innate immunity|pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity|general elicitor-dependent activation of host innate immunity This term was obsoleted because it has been misused. GO:0002752|GO:0052034|GO:0002221 True biological_process owl:Class GO:0019039 biolink:NamedThing obsolete viral-cell fusion molecule activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl viral-cell fusion molecule activity This term was made obsolete because it represents a gene product. GO:0019064|GO:0050839 True molecular_function owl:Class GO:0008985 biolink:NamedThing obsolete pyruvate dehydrogenase (cytochrome) activity OBSOLETE. Catalysis of the reaction: pyruvate + ferricytochrome b1 + H2O = CO2 + acetate + ferrocytochrome b1. tmpzr1t_l9r_go_relaxed.owl pyruvate:ubiquinone-8-oxidoreductase activity|pyruvate:ferricytochrome-b1 oxidoreductase activity|pyruvate dehydrogenase (cytochrome) activity|pyruvic (cytochrome b1) dehydrogenase activity GO:0052737 This term was made obsolete because the EC activity it represents, EC:1.2.2.2, has been deleted. True molecular_function owl:Class GO:0047138 biolink:NamedThing obsolete aquacobalamin reductase activity OBSOLETE. Catalysis of the reaction: 2 cob(II)alamin + NAD+ = 2 aquacob(III)alamin + NADH + H+. tmpzr1t_l9r_go_relaxed.owl NADH-linked aquacobalamin reductase activity|B(12a) reductase activity|NADH:cob(III)alamin oxidoreductase activity|vitamin B12a reductase activity|NADH2:cob(III)alamin oxidoreductase activity|cob(II)alamin:NAD+ oxidoreductase activity|aquocobalamin reductase activity|vitamin B(12a) reductase activity|B12a reductase activity https://github.com/geneontology/go-ontology/issues/20679 EC:1.16.1.3|MetaCyc:AQUACOBALAMIN-REDUCTASE-RXN The term was obsoleted because it is not known to be catalyzed by any gene product. True molecular_function owl:Class GO:0001028 biolink:NamedThing obsolete RNA polymerase III type 2 promoter TFIIIB-type transcription factor activity OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 2 promoter by a TFIIIC-type factor, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III type 2 promoter polymerase recruiting transcription factor activity The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. krc 2010-08-23T12:52:01Z True molecular_function owl:Class GO:0015336 biolink:NamedThing obsolete high affinity metal ion uptake transporter activity OBSOLETE. Catalysis of the reaction: Me2+(out) + H+(out) = Me2+(in) + H+(in). Me can be Fe2+, Mn2+, Zn2+, Cu2+, Cd2+, Ni2+ or Co2+. tmpzr1t_l9r_go_relaxed.owl high affinity metal ion uptake transporter activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0046873|GO:0015295 True molecular_function owl:Class GO:0015332 biolink:NamedThing obsolete leucine/valine/isoleucine permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl leucine/valine/isoleucine permease activity This term was made obsolete because it represents a multifunctional gene product. GO:0015190|GO:0005304|GO:0022857|GO:0015188 True molecular_function owl:Class GO:0004327 biolink:NamedThing obsolete formaldehyde dehydrogenase (glutathione) activity OBSOLETE. Catalysis of the reaction: formaldehyde + glutathione + NAD+ = S-formylglutathione + NADH + H+. tmpzr1t_l9r_go_relaxed.owl formaldehyde dehydrogenase (glutathione) activity This term was made obsolete because it was derived from an EC entry (1.2.1.1) that has since been split into two entries. GO:0051903|GO:0051907 True molecular_function owl:Class GO:0051789 biolink:NamedThing obsolete response to protein OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus. tmpzr1t_l9r_go_relaxed.owl response to protein stimulus|response to protein This term was made obsolete because more specific terms exist. GO:0034097|GO:0051788|GO:0009725|GO:0070848|GO:0006986 True biological_process owl:Class GO:0085013 biolink:NamedThing obsolete interaction with host via protein secreted by type VII secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a type VII secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:31:07Z True biological_process owl:Class GO:0004215 biolink:NamedThing obsolete cathepsin H activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds, acting as an aminopeptidase (notably, cleaving Arg-Xaa bonds) as well as an endopeptidase. tmpzr1t_l9r_go_relaxed.owl cathepsin BA activity|cathepsin Ba|benzoylarginine-naphthylamide (BANA) hydrolase activity|cathepsin H activity|N-benzoylarginine-beta-naphthylamide hydrolase activity|aleurain activity|cathepsin B3 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030444 biolink:NamedThing obsolete microtubule depolymerization during nuclear congression OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl microtubule depolymerization during nuclear congression GO:0007019 This term was made obsolete because the entire branch of the ontology was changed. True biological_process owl:Class GO:0005541 biolink:NamedThing obsolete acyl-CoA or acyl binding OBSOLETE. Interacting selectively with acyl-CoA or acyl, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group, or any group formally derived by removal of a hydroxyl group from the acid function of an organic acid. tmpzr1t_l9r_go_relaxed.owl acyl-CoA or acyl binding This term was made obsolete because it was replaced by more appropriate terms. GO:0000062|GO:0000035 True molecular_function owl:Class GO:0052355 biolink:NamedThing obsolete catabolism by host of symbiont cell wall cellulose OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of cellulose in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0030189 biolink:NamedThing obsolete chaperone activator activity OBSOLETE. Increases the activity of a molecular chaperone. tmpzr1t_l9r_go_relaxed.owl chaperone activator activity This term was made obsolete because it refers to a obsolete molecular function term, 'chaperone activity'. GO:0051787|GO:0006457|GO:0051082 True molecular_function owl:Class GO:0006439 biolink:NamedThing obsolete aminoacyl-tRNA hydrolase reaction OBSOLETE. Hydrolysis of the peptidyl-tRNA by aminoacyl-tRNA hydrolase upon termination of translation. Analogous to usual peptidyl transfer during elongation, except that the acceptor is H2O instead of an aminoacyl-tRNA. tmpzr1t_l9r_go_relaxed.owl aminoacyl-tRNA hydrolase reaction GO:0004045 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0001310 biolink:NamedThing obsolete extrachromosomal rDNA circle accumulation involved in replicative cell aging OBSOLETE. Increase in abundance of circular DNA molecules containing ribosomal DNA repeats in dividing cells as they age. These molecules originate in the chromosome but are excised and circularized, often by intramolecular homologous recombination between direct tandem repeats, and then replicated independently of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl extrachromosomal rDNA circle accumulation during replicative cell aging|extrachromosomal ribosomal DNA circle accumulation during replicative cell aging|extrachromosomal rDNA circle accumulation during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0035986 biolink:NamedThing obsolete senescence-associated heterochromatin focus assembly OBSOLETE. The assembly of chromatin into senescence-associated heterochromatin foci (SAHF), transcriptionally-silent heterochromatin structures present in senescent cells, containing the condensed chromatin of one chromosome, and enriched for histone modifications. Formation of these chromatin structures is thought to repress expression of proliferation-promoting genes. tmpzr1t_l9r_go_relaxed.owl senescence-associated heterochromatin focus formation|SAHF formation|senescence-associated heterochromatin foci formation https://github.com/geneontology/go-ontology/issues/22024 This term was obsoleted because there is no evidence that this is a distinct process; this should be captured as an extension GO:0031507 bf 2011-08-25T04:43:56Z True biological_process owl:Class GO:0033903 biolink:NamedThing obsolete endo-1,3(4)-beta-glucanase activity OBSOLETE. Catalysis of the endohydrolysis of 1,3- or 1,4-linkages in beta-D-glucans when the glucose residue whose reducing group is involved in the linkage to be hydrolysed is itself substituted at C-3. tmpzr1t_l9r_go_relaxed.owl beta-1,3-glucanase activity|endo-1,3-1,4-beta-D-glucanase activity|endo-beta-(1,3)-D-glucanase activity|endo-beta-1,3-1,4-glucanase activity|endo-1,3(4)-beta-glucanase activity|endo-beta-1,3-glucanase IV activity|laminaranase activity|beta-1,3-1,4-glucanase activity|endo-1,4-beta-glucanase activity|endo-1,3-beta-glucanase activity|1,3-(1,3;1,4)-beta-D-glucan 3(4)-glucanohydrolase activity|laminarinase activity|endo-beta-(1->3)-D-glucanase activity|endo-beta-1,3(4)-glucanase activity|endo-1,3-beta-D-glucanase activity EC:3.2.1.6|MetaCyc:3.2.1.6-RXN This term was made obsolete because it was representing two different activities, for which new GO terms have now been created: GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group and GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group. GO:0052861|GO:0052862 True molecular_function owl:Class GO:0008845 biolink:NamedThing obsolete endonuclease VIII activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl endonuclease VIII activity This term was made obsolete because it represents a gene product. GO:0003684|GO:0003906|GO:0000703|GO:0019104|GO:0004519|GO:0008081 True molecular_function owl:Class GO:0052340 biolink:NamedThing obsolete catabolism by organism of cell wall cellulose in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of cellulose in the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of cell wall cellulose in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0008950 biolink:NamedThing obsolete p-aminobenzoate synthetase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl p-aminobenzoate synthetase This term was made obsolete because it refers to two different functions, a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered. GO:0046820|GO:0008696 True molecular_function owl:Class GO:0044037 biolink:NamedThing obsolete multi-organism cell wall macromolecule metabolic process OBSOLETE. The chemical reactions and pathways involving macromolecules forming, or destined to form, part of a cell wall, involving more than one organism. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. tmpzr1t_l9r_go_relaxed.owl multi-organism cell wall macromolecule metabolism https://github.com/geneontology/go-ontology/issues/19769 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1905565 biolink:NamedThing obsolete regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport OBSOLETE. Any process that modulates the frequency, rate or extent of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|regulation of receptor-mediated endocytosis of LDL This term was obsoleted at the TermGenie Gatekeeper stage. nc 2016-10-18T10:58:29Z True biological_process owl:Class GO:0006131 biolink:NamedThing obsolete dihydrolipoamide reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0022900|GO:0004148|GO:0051068 True biological_process owl:Class GO:0007048 biolink:NamedThing obsolete oncogenesis OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl oncogenesis This term was made obsolete because it represents a pathological process. True biological_process owl:Class GO:0005623 biolink:NamedThing obsolete cell OBSOLETE. The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19036 cell and encapsulating structures NIF_Subcellular:sao1813327414|Wikipedia:Cell_(biology) This term was obsoleted because it was redundant with the root class of the cell ontology, CL:0000000. True cellular_component owl:Class GO:0017092 biolink:NamedThing obsolete sterol regulatory element-binding protein site 2 protease activity OBSOLETE. Catalysis of the cleavage, within the membrane-spanning helix, of the amino-terminal half (the intermediate form) of sterol regulatory element binding protein (SREBP). This activity releases the transcription factor domain of SREBP from the membrane, freeing it to enter the nucleus. tmpzr1t_l9r_go_relaxed.owl SREBP site 2 protease activity|sterol regulatory element-binding protein site 2 protease activity GO:0008237 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0009417 biolink:NamedThing obsolete fimbrin OBSOLETE. A class of proteins that are the subunit components of fimbria. tmpzr1t_l9r_go_relaxed.owl fimbrin GO:0009289 This term was made obsolete because it represents a class of gene products. True cellular_component owl:Class GO:0004194 biolink:NamedThing obsolete pepsin A activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Preferential cleavage: hydrophobic, preferably aromatic, residues in P1 and P1' positions. Cleaves Phe1-Val2, Gln4-His5, Glu13-Ala14, Ala14-Leu15, Leu15-Tyr16, Tyr16-Leu17, Gly23-Phe24, Phe24-Phe25 and Phe25-Tyr26 bonds in the B chain of insulin. tmpzr1t_l9r_go_relaxed.owl lactated pepsin|P II|pepsin activity|pepsin R|pepsin fortior|lactated pepsin elixir|P I|pepsin D|elixir lactate of pepsin|fundus-pepsin|pepsin A activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0043736 biolink:NamedThing obsolete DNA-3-methyladenine glycosylase IV activity OBSOLETE. Catalysis of the hydrolysis of alkylated DNA; recognizes and removes both N-3- and N-7-methyl purines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic (AP) site. tmpzr1t_l9r_go_relaxed.owl DNA-3-methyladenine glycosylase IV activity|MpgII|Mpg II This term was made obsolete because it represents an enzyme with four different activities. GO:0052822|GO:0008725|GO:0043916|GO:0052821 True molecular_function owl:Class GO:0075103 biolink:NamedThing obsolete modulation by host of symbiont calcium or calmodulin-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont Ca++ or calmodulin-mediated signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0016148 biolink:NamedThing obsolete protein-synthesizing GTPase activity, termination OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl protein-synthesizing GTPase activity, termination This term was made obsolete because it contains both process and function information. GO:0006415|GO:0003924|GO:0008079|GO:0006412 True molecular_function owl:Class GO:0004384 biolink:NamedThing obsolete membrane-associated guanylate kinase OBSOLETE. Catalysis of the reaction: ATP + GMP = ADP + GDP, associated with the cell membrane. tmpzr1t_l9r_go_relaxed.owl membrane-associated guanylate kinase|MAGUK This term was made obsolete because it represents a gene product and not a function. GO:0007155|GO:0004385|GO:0050839|GO:0016021|GO:0005102 True molecular_function owl:Class GO:0015051 biolink:NamedThing obsolete X-opioid receptor activity OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of X-opioid receptors. tmpzr1t_l9r_go_relaxed.owl X-opioid receptor activity This term was made obsolete because the receptor is defined based on its pharmacological properties. GO:0001626 True molecular_function owl:Class GO:0048151 biolink:NamedThing obsolete hyperphosphorylation OBSOLETE. The excessive phosphorylation of a protein, as a result of activation of kinases, deactivation of phosphatases, or both. tmpzr1t_l9r_go_relaxed.owl hyperphosphorylation GO:0016310 This term was made obsolete because it is an unnecessary grouping term and was poorly defined. True biological_process owl:Class GO:1990881 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter in response to DNA damage OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of DNA damage. tmpzr1t_l9r_go_relaxed.owl inhibition of transcription from RNA polymerase II promoter in response to DNA damage|down-regulation of transcription from RNA polymerase II promoter in response to DNA damage|down regulation of transcription from RNA polymerase II promoter in response to DNA damage|downregulation of transcription from RNA polymerase II promoter in response to DNA damage This term was obsoleted at the TermGenie Gatekeeper stage. GO:0006974|GO:0000122 mcc 2015-10-28T13:02:18Z True biological_process owl:Class GO:0018443 biolink:NamedThing obsolete enzyme active site formation via L-aspartic 4-phosphoric anhydride OBSOLETE. The transient phosphorylation of peptidyl-aspartic acid to form L-aspartic 4-phosphoric anhydride. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0033 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:4357737. True biological_process owl:Class GO:0052522 biolink:NamedThing obsolete positive regulation by organism of phagocytosis in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by organism of phagocytosis in other organism during symbiotic interaction|positive regulation by organism of phagocytosis in other organism during symbiotic interaction|up regulation by organism of phagocytosis in other organism during symbiotic interaction|up-regulation by organism of phagocytosis in other organism during symbiotic interaction|activation by organism of phagocytosis in other organism during symbiotic interaction|stimulation by organism of phagocytosis in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0075106 biolink:NamedThing obsolete modulation by symbiont of host adenylate cyclase activity OBSOLETE. Any process in which the symbiont modulates the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Modulation by symbiont of host adenyl cyclase activity|Modulation by symbiont of host cAMP generating peptide activity|Modulation by symbiont of host ATP pyrophosphate-lyase activity|Modulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity|Modulation by symbiont of host adenylyl cyclase activity|Modulation by symbiont of host adenylylcyclase activity|Modulation by symbiont of host ATP diphosphate-lyase (cyclizing) activity|Modulation by symbiont of host 3',5'-cyclic AMP synthetase activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0042280 biolink:NamedThing obsolete cell surface antigen activity, host-interacting OBSOLETE. Functions as an immunogenic target for the host immune system that masks other invariant surface molecules from immune recognition. tmpzr1t_l9r_go_relaxed.owl cell surface antigen activity, host-interacting This term was made obsolete because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. GO:0044403|GO:0046789 True molecular_function owl:Class GO:0008041 biolink:NamedThing obsolete storage protein of fat body (sensu Insecta) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl storage protein of fat body (sensu Insecta) GO:0045735 This term was made obsolete because it describes a cellular location rather than a function. True molecular_function owl:Class GO:0005050 biolink:NamedThing obsolete peroxisome receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxisome receptor This term was made obsolete because it describes a cellular component. GO:0038023|GO:0005777 True molecular_function owl:Class GO:0005799 biolink:NamedThing obsolete coatomer OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl coatomer|COPI vesicle This term was made obsolete because its position and synonym implied that it confused a coated vesicle with the coat itself. GO:0030126|GO:0030137 True cellular_component owl:Class GO:0005205 biolink:NamedThing obsolete chondroitin sulfate/dermatan sulfate proteoglycan OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate/dermatan sulphate proteoglycan|chondroitin sulfate/dermatan sulfate proteoglycan This term was made obsolete because it describes the composition (i.e. proteoglycan) of a gene product, not a molecular function. True molecular_function owl:Class GO:0016265 biolink:NamedThing obsolete death OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Death This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants. GO:0012501|GO:0008219 True biological_process owl:Class GO:1901043 biolink:NamedThing obsolete protein polyubiquitination involved in cellular response to misfolded protein OBSOLETE. Any protein polyubiquitination that is involved in cellular response to misfolded protein. tmpzr1t_l9r_go_relaxed.owl protein polyubiquitylation of cellular response to misfolded protein|polyubiquitin of cellular response to misfolded protein|protein polyubiquitination involved in cellular response to misfolded protein|protein polyubiquitinylation of cellular response to misfolded protein|protein polyubiquitination of cellular response to misfolded protein This term was made obsolete because it was added in error and a more specific term was created. GO:1901044 al 2012-06-26T09:40:45Z True biological_process owl:Class GO:0005817 biolink:NamedThing obsolete centrosomal mitotic factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl centrosomal mitotic factor This term was made obsolete because it was not defined. True cellular_component owl:Class GO:1903156 biolink:NamedThing obsolete guanine transmembrane transporter activity involved in guanine import into cell OBSOLETE. Any guanine transmembrane transporter activity that is involved in guanine import into cell. tmpzr1t_l9r_go_relaxed.owl guanine transmembrane transporter activity involved in guanine import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:10Z True molecular_function owl:Class GO:0009460 biolink:NamedThing obsolete cytochrome b OBSOLETE. A cytochrome containing noncovalently bound protoheme (iron protoporphyrin IX; heme b). tmpzr1t_l9r_go_relaxed.owl cytochrome b This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0001636 biolink:NamedThing obsolete corticotrophin-releasing factor gastric inhibitory peptide-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl corticotrophin-releasing factor gastric inhibitory peptide-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0000188 biolink:NamedThing obsolete inactivation of MAPK activity OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase. tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK during sporulation|termination of MAPK activity https://github.com/geneontology/go-ontology/issues/21308 This term was obsoleted because it represents a molecular function. GO:0000165|GO:0043539 True biological_process owl:Class GO:0071686 biolink:NamedThing obsolete horsetail nucleus OBSOLETE. The elongated nucleus which forms during the rapid oscillatory movement at meiotic prophase; characterized in Schizosaccharomyces pombe. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete at the request of PomBase as the concept can be expressed by annotating to a less granular term and using annotation extensions. mah 2010-02-22T04:52:01Z True cellular_component owl:Class GO:0055101 biolink:NamedThing obsolete glycerophospholipase inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of a glycerophospholipase, an enzyme that catalyzes of the hydrolysis of a glycerophospholipid. tmpzr1t_l9r_go_relaxed.owl glycerophospholipase inhibitor activity This term was made obsolete because it refers to a non-existent molecular function term, 'glycerophosphate activity', which also cannot be found in the literature. True molecular_function owl:Class GO:0001630 biolink:NamedThing obsolete GP40-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GP40-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0005781 biolink:NamedThing obsolete peroxisome targeting signal receptor complex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxisome targeting signal receptor complex This term was made obsolete because it represents a single polypeptide rather than a complex; all known peroxisome targeting signal receptors are monomeric. GO:0000268|GO:0006625 True cellular_component owl:Class GO:0004009 biolink:NamedThing obsolete ATP-binding cassette (ABC) transporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ATP-binding cassette (ABC) transporter activity This term was made obsolete because ABC transporters are a protein family rather than a functional grouping. GO:0043190|GO:0042626 True molecular_function owl:Class GO:1990843 biolink:NamedThing obsolete subsarcolemmal mitochondrion OBSOLETE. A mitochondrion that occurs adjacent to the sarcolemma in striated muscle cells and responds in distinct ways to physiological triggers. tmpzr1t_l9r_go_relaxed.owl SSM|SS mitochondrion This term was obsoleted because it corresponds to mitochondria of specific cell types and this information should be captured as an extension. GO:0005739 sl 2015-08-31T16:05:14Z True cellular_component owl:Class GO:0008259 biolink:NamedThing obsolete transforming growth factor beta ligand binding to type I receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl TGFbeta ligand binding to type I receptor|TGF-beta ligand binding to type I receptor|transforming growth factor beta ligand binding to type I receptor This term was made obsolete because it represents a function. GO:0005025|GO:0005160|GO:0050431 True biological_process owl:Class GO:1900201 biolink:NamedThing obsolete regulation of spread of virus in host, cell to cell OBSOLETE. Any process that modulates the frequency, rate or extent of spread of virus in host, cell to cell. tmpzr1t_l9r_go_relaxed.owl regulation of spread of virus within host, cell to cell|regulation of spread of virus in host, cell to cell|regulation of cell to cell spread of virus within host|regulation of viral spread within host, cell to cell This term was obsoleted at the TermGenie Gatekeeper stage. pm 2012-03-21T01:15:41Z True biological_process owl:Class GO:0075147 biolink:NamedThing obsolete regulation of signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0007239 biolink:NamedThing obsolete activation of Hog1 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of Hog1 This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:2000575 biolink:NamedThing obsolete negative regulation of microtubule motor activity OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of microtubule motor activity. tmpzr1t_l9r_go_relaxed.owl negative regulation of dynein ATPase activity|negative regulation of kinetochore motor activity|negative regulation of kinesin motor activity|negative regulation of axonemal motor activity|negative regulation of kinesin|negative regulation of dynein https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140661 bf 2011-04-05T08:36:48Z True biological_process owl:Class GO:0044047 biolink:NamedThing obsolete interaction with host via protein secreted by type I secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type I secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class RO:0002405 biolink:NamedThing immediately causally downstream of tmpzr1t_l9r_go_relaxed.owl RO:0002405 external immediately_causally_downstream_of GO:0052436 biolink:NamedThing obsolete modulation by organism of defense-related symbiont calcium-dependent protein kinase pathway OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the symbiont calcium-dependent protein kinase signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont CDPK pathway|modulation by organism of defense-related symbiont calcium-dependent protein kinase pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0003809 biolink:NamedThing obsolete thrombin activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Gly; activates fibrinogen to fibrin and releases fibrinopeptide A and B. tmpzr1t_l9r_go_relaxed.owl thrombin activity|tropostasin|activated blood-coagulation factor II|thrombofort|fibrinogenase activity|gamma-thrombin|thrombin-C|topical|beta-thrombin|blood-coagulation factor IIa|E thrombin|thrombase activity|factor IIa GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0100070 biolink:NamedThing obsolete obsolete regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0051389 biolink:NamedThing obsolete inactivation of MAPKK activity OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase kinase (MAPKK). tmpzr1t_l9r_go_relaxed.owl termination of MAP kinase kinase activity|inactivation of MAP kinase kinase activity|termination of MAPKK activity https://github.com/geneontology/go-ontology/issues/21308 This term was obsoleted because it represents a molecular function. GO:0030291|GO:0043409 True biological_process owl:Class GO:0016083 biolink:NamedThing obsolete synaptic vesicle fusion OBSOLETE. Fusion of the synaptic vesicle with the postsynaptic membrane. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle fusion This term was made obsolete because it was wrongly defined. GO:0016192 True biological_process owl:Class GO:0004374 biolink:NamedThing obsolete glycine cleavage system OBSOLETE. Catalysis of the reactions: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + carbon dioxide (CO2), followed by S-aminomethyldihydrolipoylprotein + (6S)-tetrahydrofolate = dihydrolipoylprotein + (6R)-5,10-methylenetetrahydrofolate + ammonia. Made up of two components, aminomethyltransferase and glycine dehydrogenase (decarboxylating). tmpzr1t_l9r_go_relaxed.owl glycine synthase|glycine cleavage system GO:0019464 This term was made obsolete because it represents a process rather than a function. True molecular_function owl:Class GO:0052049 biolink:NamedThing obsolete interaction with host via protein secreted by type III secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a type III secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0006803 biolink:NamedThing obsolete glutathione conjugation reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl glutathione conjugation reaction GO:0004364 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0071438 biolink:NamedThing obsolete invadopodium membrane OBSOLETE. The portion of the plasma membrane surrounding an invadopodium. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. mah 2009-12-16T03:00:30Z True cellular_component owl:Class GO:0051843 biolink:NamedThing obsolete evasion or tolerance of symbiont defense response OBSOLETE. Any process, either active or passive, by which an organism avoids or tolerates the effects of a symbiont organism's defense response. The symbiont defense response is mounted by the symbiont in response to the presence of the organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl evasion or tolerance of symbiont defense response|evasion of symbiont defence response This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0043172 biolink:NamedThing obsolete ferredoxin biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of ferredoxin, any simple, nonenzymatic iron-sulfur protein that is characterized by having equal numbers of atoms of iron and labile sulfur. Iron and sulfur atoms are present in one or two clusters of two or four atoms of each. tmpzr1t_l9r_go_relaxed.owl ferredoxin formation|ferredoxin anabolism|ferredoxin synthesis|ferredoxin biosynthesis This term was made obsolete because it refers to biosynthesis of a protein. True biological_process owl:Class GO:0052477 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont callose deposition OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of callose deposition performed by the symbiont as part of its defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont callose deposition|suppression by organism of defense-related symbiont callose deposition This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0035828 biolink:NamedThing obsolete renal rubidium ion transport OBSOLETE. The directed movement of rubidium ions (Rb+) by the kidney. tmpzr1t_l9r_go_relaxed.owl renal Rb+ transport|renal rubidium cation transport This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-04T02:58:50Z True biological_process owl:Class GO:0001083 biolink:NamedThing obsolete transcription factor activity, RNA polymerase II basal transcription factor binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II basal transcription factor binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2010-10-27T04:12:55Z True molecular_function owl:Class GO:0042964 biolink:NamedThing obsolete thioredoxin reduction OBSOLETE. The chemical reactions and pathways resulting in the reduction of thioredoxin, a small disulfide-containing redox protein that serves as a general protein disulfide oxidoreductase. tmpzr1t_l9r_go_relaxed.owl thioredoxin synthesis|thioredoxin formation|thioredoxin anabolism|thioredoxin biosynthesis https://github.com/geneontology/go-ontology/issues/20250 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1902586 biolink:NamedThing obsolete multi-organism intercellular transport OBSOLETE. An intercellular transport which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism intercellular transport https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-19T13:25:05Z True biological_process owl:Class GO:0005108 biolink:NamedThing obsolete transmembrane ephrin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane ephrin This term was made obsolete because it refers to a class of gene products. GO:0046875|GO:0005887 True molecular_function owl:Class GO:0045093 biolink:NamedThing obsolete interleukin-18 alpha subunit binding OBSOLETE. Binding to alpha subunit of interleukin-18. IL-18a is a component of IL-18 that is essential for IL-18 binding on the surface of T-helper 1 cells. tmpzr1t_l9r_go_relaxed.owl IL-18Ra binding This term was obsoleted because interleukin-18 is a single polypeptide and has no subunits True molecular_function owl:Class GO:2001217 biolink:NamedThing obsolete regulation of S/G2 transition of mitotic cell cycle OBSOLETE. Any process that modulates the frequency, rate or extent of S/G2 transition of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of S/G2 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. GO:0044770 dph 2011-11-16T09:14:42Z True biological_process owl:Class GO:1990951 biolink:NamedThing obsolete manchette assembly OBSOLETE. The assembly and organization of the manchette, a tubular array of microtubules, possibly also containing actin filaments, that extends from the perinuclear ring surrounding the spermatid nucleus to the flagellar axoneme. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. krc 2016-05-11T00:05:35Z True biological_process owl:Class GO:1900416 biolink:NamedThing obsolete regulation of 4,6-pyruvylated galactose residue biosynthetic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of 4,6-pyruvylated galactose residue biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T03:42:41Z True biological_process owl:Class GO:0007345 biolink:NamedThing obsolete embryogenesis and morphogenesis OBSOLETE. Formation and development of an embryo and its organized structures. tmpzr1t_l9r_go_relaxed.owl embryogenesis and morphogenesis This term was made obsolete because more appropriate terms were created. Morphogenesis in plants also occurs outside of embryogenesis. GO:0009653|GO:0009790 True biological_process owl:Class GO:0005482 biolink:NamedThing obsolete vesicle targeting OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vesicle targeting This term was made obsolete because it represents a biological process and not a molecular function. GO:0016080|GO:0006903 True molecular_function owl:Class GO:0008159 biolink:NamedThing obsolete positive transcription elongation factor activity OBSOLETE. Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation. tmpzr1t_l9r_go_relaxed.owl positive transcription elongation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0032786 True molecular_function owl:Class GO:0075067 biolink:NamedThing obsolete growth or development of symbiont in host intercellular space OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont in host intercellular space This term was made obsolete because it contained a conjunction (or). GO:0051701|GO:0044114 True biological_process owl:Class GO:0031558 biolink:NamedThing obsolete induction of apoptosis in response to chemical stimulus OBSOLETE. Any process that directly activates any of the steps required for cell death by apoptosis as a result of a chemical stimulus. tmpzr1t_l9r_go_relaxed.owl induction of apoptosis in response to chemical stimulus|induction of apoptosis in response to chemical substance This term was made obsolete because it is now superseded by better defined and more specific terms under the node of GO:0006915 apoptotic process. True biological_process owl:Class GO:0005557 biolink:NamedThing obsolete lymphocyte antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lymphocyte antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0000364 biolink:NamedThing obsolete second U2-type spliceosomal transesterification activity OBSOLETE. Catalysis of the second transesterification reaction of U2-type spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure. The catalytic site is thought to be formed by U6 and/or U2 snRNAs and/or associated proteins. tmpzr1t_l9r_go_relaxed.owl 3'-splice site cleavage, exon ligation|second U2-type spliceosomal transesterification activity GO:0000386 This term was made obsolete because the activities used in the U2- and U12-type complexes are the same. The cellular component ontology should (and does) represent the two different complexes, but the molecular function ontology should not. True molecular_function owl:Class GO:0052359 biolink:NamedThing obsolete catabolism by organism of glucan in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of glucan molecules within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of glucan in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0006717 biolink:NamedThing obsolete juvenile hormone binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl juvenile hormone binding This term was made obsolete because it represents a molecular function and not a biological process. GO:0005500 True biological_process owl:Class GO:1990924 biolink:NamedThing obsolete amphisome membrane OBSOLETE. The lipid bilayer surrounding the amphisome and separating its contents from the cell cytoplasm. tmpzr1t_l9r_go_relaxed.owl amphisomal membrane This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2016-01-27T13:58:16Z True cellular_component owl:Class GO:0033570 biolink:NamedThing obsolete transferrin transmembrane transporter activity OBSOLETE. Enables the transfer of transferrin from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17157 This term was obsoleted because there is no evidence that this function exists. True molecular_function owl:Class GO:0035827 biolink:NamedThing obsolete rubidium ion transmembrane transporter activity OBSOLETE. Enables the transfer of rubidium ions (Rb+) from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl Rb+ transmembrane transporter activity|rubidium transmembrane transporter activity|rubidium cation transmembrane transporter activity This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-04T02:55:30Z True molecular_function owl:Class GO:0060859 biolink:NamedThing obsolete regulation of vesicle-mediated transport involved in floral organ abscission OBSOLETE. Any process that modulates the rate, frequency, or extent of the directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. dph 2009-08-12T03:56:21Z True biological_process owl:Class GO:0046615 biolink:NamedThing obsolete re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces) OBSOLETE. The resumption of the Saccharomyces mitotic cell division cycle by pheromone-arrested cells that have not mated. tmpzr1t_l9r_go_relaxed.owl re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces) GO:0000321 This term was made obsolete because there is no evidence that this process is unique to Saccharomyces. True biological_process owl:Class GO:0015060 biolink:NamedThing obsolete green-sensitive opsin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl green-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0007603|GO:0016021|GO:0009881|GO:0016918|GO:0046876 True molecular_function owl:Class GO:0006327 biolink:NamedThing obsolete random coil binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl random coil binding This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0100003 biolink:NamedThing obsolete positive regulation of sodium ion transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sodium ion transport. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0106189 biolink:NamedThing obsolete translocase activity acting on hydrons linked to the hydrolysis of a diphosphate OBSOLETE. Catalysis of the translocation of hydrons linked to the hydrolysis of a diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.1.3.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-07T18:12:33Z True molecular_function owl:Class GO:0003731 biolink:NamedThing obsolete mRNA cap binding OBSOLETE. Interacting selectively with the 7-methylguanosine cap at the 5' end of a nascent messenger RNA transcript. tmpzr1t_l9r_go_relaxed.owl mRNA cap binding This term was made obsolete because the functional distinction for cap binding is the structure of the cap, not the type of RNA it is attached to. GO:0000339 True molecular_function owl:Class GO:0039550 biolink:NamedThing obsolete suppression by virus of host IRF3 activity by inhibition of DNA binding OBSOLETE. Any process in which a virus stops, prevents, or reduces IRF3-dependent gene transcription, by preventing or reducing IRF3 binding to promoter sites. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host IRF3-DNA binding The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-19T04:27:25Z True biological_process owl:Class GO:0044031 biolink:NamedThing obsolete modification by symbiont of host protein by phosphorylation OBSOLETE. The process in which an organism adds a phosphate group to a protein of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1905500 biolink:NamedThing obsolete heteroreceptor complex assembly OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form a heteroreceptor complex. tmpzr1t_l9r_go_relaxed.owl heteroreceptor complex formation This term was obsoleted at the TermGenie Gatekeeper stage. pad 2016-09-27T10:49:56Z True biological_process owl:Class GO:0019895 biolink:NamedThing obsolete kinesin-associated mitochondrial adaptor activity OBSOLETE. The activity of linking kinesins, cytoplasmic proteins responsible for moving vesicles and organelles towards the distal end of microtubules, to mitochondria. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17668 This term was obsoleted because it represents the function of a specific protein. True molecular_function owl:Class GO:0023004 biolink:NamedThing obsolete activation of dopamine receptor signaling pathway OBSOLETE. Any process that initiates the dopamine receptor protein signaling pathway through stimulation of the dopamine receptor. tmpzr1t_l9r_go_relaxed.owl stimulation of dopamine receptor signaling pathway|initiation of dopamine receptor signaling pathway|activation of dopamine receptor signaling pathway|activation of dopamine receptor signalling pathway This term was made obsolete because the meaning of the term is ambiguous. GO:0060161 2010-02-16T09:30:50Z True biological_process owl:Class GO:1990866 biolink:NamedThing obsolete response to sustained hypoxia OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sustained stimulus indicating lowered oxygen tension. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-09-25T15:18:11Z True biological_process owl:Class GO:0016962 biolink:NamedThing obsolete receptor-associated protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl receptor-associated protein activity This term was made obsolete because it describes a gene product and not a molecular function. GO:0005102|GO:0005515 True molecular_function owl:Class GO:0039542 biolink:NamedThing obsolete suppression by virus of host RIG-I K63-linked ubiquitination OBSOLETE. Any process in which a virus stops, prevents, or reduces the rate or extent of K63-linked ubiquitination of RIG-I (also known as DDX58), thereby suppressing RIG-I signal transduction. Lys63-linked ubiquitination of the N-terminal CARD domains of RIG-I is crucial for the cytosolic RIG-I signaling pathway to elicit host antiviral innate immunity. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of TRIM25-mediated ubiquitination of host RIG-I|inhibition by virus of host DDX58 K63-linked ubiquitination|inhibition by virus of host RIG-I activity by inhibition of RIG-I ubiquitination The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-18T02:30:29Z True biological_process owl:Class GO:0009075 biolink:NamedThing obsolete histidine family amino acid metabolic process OBSOLETE. The chemical reactions and pathways involving amino acids of the histidine family. tmpzr1t_l9r_go_relaxed.owl histidine family amino acid metabolism|histidine family amino acid metabolic process GO:0006547 This term was made obsolete because it was an unnecessary grouping term, as histidine would be the only member of this family. True biological_process owl:Class GO:1900062 biolink:NamedThing obsolete regulation of replicative cell aging OBSOLETE. Any process that modulates the frequency, rate or extent of replicative cell aging. tmpzr1t_l9r_go_relaxed.owl regulation of replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. dph 2012-01-26T01:46:47Z True biological_process owl:Class GO:0039555 biolink:NamedThing obsolete suppression by virus of host MDA-5 activity via MDA-5 binding OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of MDA-5 (also known as IFIH1) by binding to MDA-5 itself. For example, direct binding of viral proteins to the host MDA-5 protein can inhibit interaction of MDA-5 with MAVS, its downstream signaling effector. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host MDA5 activity by MDA-5 binding The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-09T04:06:46Z True biological_process owl:Class GO:0016305 biolink:NamedThing obsolete phosphatidylinositol 3-kinase activity, class II OBSOLETE. A phosphoinositide 3-kinase which can phosphorylate phosphatidylinositol and phosphatidylinositol-4-phosphate; the human form can phosphorylate phosphatidylinositol-4,5-bisphosphate in the presence of phosphatidylserine. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase activity, class II|PI3KC2 This term was made obsolete because it represents a class of gene products. GO:0046934|GO:0016303|GO:0035005 True molecular_function owl:Class GO:0017082 biolink:NamedThing obsolete mineralocorticoid receptor activity OBSOLETE. Combining with a mineralocorticoid and transmitting the signal to the transcriptional machinery by binding to a specific DNA sequence in order to modulate transcription by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl aldosterone receptor https://github.com/geneontology/go-ontology/issues/16732 True molecular_function owl:Class GO:0016172 biolink:NamedThing obsolete antifreeze activity OBSOLETE. Inhibits the formation of ice crystals in organismal fluid (e.g. blood) at below freezing exogenous temperatures. tmpzr1t_l9r_go_relaxed.owl antifreeze activity This term was made obsolete because it refers to a biological process. GO:0050825|GO:0042309|GO:0050826 True molecular_function owl:Class GO:0140276 biolink:NamedThing obsolete pericentric heterochromatin maintenance OBSOLETE. Any heterochromatin maintenance that is involved in chromatin silencing at or near a centromere. tmpzr1t_l9r_go_relaxed.owl heterochromatin maintenance involved in chromatin silencing at pericentric region|heterochromatin maintenance involved in chromatin silencing at centromeric outer repeats|heterochromatin maintenance involved in chromatin silencing at centromere outer repeat region https://github.com/geneontology/go-ontology/issues/19301 This term was obsoleted because it represents a phenotype. bf 2013-08-21T10:13:39Z True GO:1902368 biological_process owl:Class GO:0000180 biolink:NamedThing obsolete cytosolic large ribosomal subunit OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytosolic large ribosomal subunit This term was made obsolete because more specific children exist. GO:0022625 True cellular_component owl:Class GO:0015256 biolink:NamedThing obsolete monocarboxylate channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl monocarboxylate channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0035121 biolink:NamedThing obsolete tail morphogenesis OBSOLETE. The process in which the anatomical structures of the tail are generated and organized. The tail is the hindmost part of some animals. tmpzr1t_l9r_go_relaxed.owl tail morphogenesis This term was made obsolete because 'tail' has different meanings in different organisms, and is therefore not a useful grouping term. GO:0048809|GO:0036342|GO:0003002 True biological_process owl:Class GO:0003734 biolink:NamedThing obsolete small nuclear ribonucleoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small nuclear ribonucleoprotein|snRNP GO:0030532 This term was made obsolete because it describes a cellular component rather than a molecular function. True molecular_function owl:Class GO:0061338 biolink:NamedThing obsolete atrioventricular node impulse conduction delay OBSOLETE. A heart process that modulates the propagation of the signal that causes the heart muscle to contract. tmpzr1t_l9r_go_relaxed.owl atrioventricular node impulse conduction delay This term was made obsolete because it was created before the cardiac conduction overhaul, and represents a measurement rather than a process. GO:0086016 dph 2010-09-29T08:55:53Z True biological_process owl:Class GO:0008981 biolink:NamedThing obsolete protease IV activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protease IV activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0106190 biolink:NamedThing obsolete translocase activity acting on hydrons linked to a decarboxylation reaction OBSOLETE. Catalysis of the translocation of hydrons linked to a decarboxylation reaction. tmpzr1t_l9r_go_relaxed.owl EC:7.1.4.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-07T18:17:17Z True molecular_function owl:Class GO:0052452 biolink:NamedThing obsolete modulation by organism of symbiont innate immunity OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the innate immune response of the symbiont organism; the innate immune response is the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont innate immune response|modulation by organism of symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052384 biolink:NamedThing obsolete evasion or tolerance by organism of symbiont-produced reactive oxygen species OBSOLETE. The process by which an organism avoids the effects of reactive oxygen species produced as a defense response by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl evasion or tolerance of symbiont-produced ROS|evasion or tolerance of symbiont-produced active oxygen species|evasion or tolerance of reactive oxygen species produced by symbiont in response to organism|evasion by organism of cellular damage caused by symbiont oxidative burst|evasion or tolerance of defense-related symbiont oxidative burst|evasion or tolerance of defense-related symbiont metabolic burst|evasion or tolerance of symbiont-produced AOS|evasion or tolerance of symbiont-produced ROIs|evasion or tolerance of symbiont-produced reactive oxygen intermediates|evasion or tolerance by organism of symbiont-produced reactive oxygen species|evasion or tolerance of defense-related symbiont respiratory burst|evasion or tolerance by organism of reactive oxygen species produced during symbiont defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0030456 biolink:NamedThing obsolete activation of MAPK (mating sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPK (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0046270 biolink:NamedThing obsolete 4-toluenecarboxylate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule. tmpzr1t_l9r_go_relaxed.owl 4-toluenecarboxylate synthesis|4-toluenecarboxylate biosynthesis|4-toluenecarboxylate anabolism|4-toluenecarboxylate formation|4-toluenecarboxylate biosynthetic process GO:0019611 This term was made obsolete because 4-toluenecarboxylate is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0061487 biolink:NamedThing obsolete DNA replication initiation from late origin OBSOLETE. The process in which DNA-dependent DNA replication is started at a late origin of replication. A late origin of replication refers to an origin that is activated late in S phase. tmpzr1t_l9r_go_relaxed.owl late replication origin firing The reason for obsoletion is that there is no evidence that this is a different process from its parent term (DNA replication initiation, GO:0006270), but only that regulation of initiation at late origins differs from regulation of initiation at early origins. GO:0101017 dph 2012-12-06T11:21:48Z True biological_process owl:Class GO:0015032 biolink:NamedThing obsolete storage protein import into fat body OBSOLETE. The incorporation of hemolymph proteins by cells of the fat body of holometabolous insects, during the final larval stage. Uptake of these proteins prepares the insect for pupation and metamorphosis, since insect pupae do not feed and therefore depend on material that has been accumulated during larval life. tmpzr1t_l9r_go_relaxed.owl storage protein import into fat body cells|fat body metabolism|fat body metabolic process|storage protein transport into fat body cells|storage protein import by fat body cells|storage protein uptake into fat body cells|import of storage protein into fat body|fat body storage protein uptake https://github.com/geneontology/go-ontology/issues/12935 The reason for obsoletion is that the data from the paper for which the term was requested can be accurately described using 'receptor-mediated endocytosis'. True biological_process owl:Class GO:0003772 biolink:NamedThing obsolete co-chaperonin activity OBSOLETE. Co-chaperonins are proteins that bind to chaperones and this complex then folds misfolded proteins. Co-chaperonins by themselves do not possess chaperone activity. tmpzr1t_l9r_go_relaxed.owl co-chaperonin activity This term was made obsolete because it represents a class of gene products rather than a molecular function. GO:0006457|GO:0044183|GO:0051087 True molecular_function owl:Class GO:0038079 biolink:NamedThing obsolete MAP kinase activity involved in osmosensory signaling pathway OBSOLETE. Catalysis of the reaction: protein + ATP = protein phosphate + ADP by a mitogen-activated protein kinase, as part of a MAPK signaling cascade that passes on a signal within an osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl MAPK activity involved in osmosensory signaling pathway|MAP kinase activity involved in osmosensory signalling pathway This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:41:31Z True molecular_function owl:Class GO:0030443 biolink:NamedThing obsolete nuclear translocation of MAPK during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0051848 biolink:NamedThing obsolete active evasion of symbiont immune response via regulation of symbiont cytokine network OBSOLETE. Any mechanism of active immune avoidance which works by regulating symbiont cytokine networks, e.g. by secreting proteins that mimic cytokine receptors that act to sequester symbiont cytokines and inhibit action. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active evasion of symbiont immune response via regulation of symbiont cytokine network|active immune evasion via regulation of symbiont cytokine network|active immune evasion via modulation of symbiont cytokine network This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0052431 biolink:NamedThing obsolete modulation by organism of symbiont T-cell mediated immune response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the T-cell mediated immune response of a symbiont organism, where the two organisms are in a symbiotic interaction. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont T-cell mediated immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0008769 biolink:NamedThing obsolete X-His dipeptidase activity OBSOLETE. Catalysis of the hydrolysis of Xaa-His dipeptides. tmpzr1t_l9r_go_relaxed.owl aminoacylhistidine dipeptidase activity|dipeptidase M|aminoacyl-histidine dipeptidase activity|carnosinase activity|X-His dipeptidase activity|Xaa-His dipeptidase activity|homocarnosinase activity MetaCyc:3.4.13.3-RXN|EC:3.4.13.3 This term was made obsolete because it represents a gene product. GO:0008235|GO:0016805 True molecular_function owl:Class GO:0033187 biolink:NamedThing obsolete inositol hexakisphosphate 4-kinase or 6-kinase activity OBSOLETE. Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate, and ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol hexakisphosphate 4-kinase or 6-kinase activity This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0000831|GO:0000830 True molecular_function owl:Class GO:0019204 biolink:NamedThing obsolete nucleotide phosphatase activity OBSOLETE. Catalysis of the reaction: phosphopolynucleotide + H2O = polynucleotide + phosphate. tmpzr1t_l9r_go_relaxed.owl nucleotide phosphatase activity This term was defined to cover phosphatase activity against polynucleotides, but had subclasses and annotations for phosphatase activity against free nucleotides. It has therefore been split. Use GO:0098519 (nucleotide phosphatase activity, acting against free nucleotides) or GO:0098518 (polynucleotide phosphatase activity). GO:0098519|GO:0098518 True molecular_function owl:Class GO:0042394 biolink:NamedThing obsolete ecdysis, protein-based cuticle OBSOLETE. The shedding of the old protein-based cuticular fragments during the molting cycle. Examples of this process are found in invertebrates. tmpzr1t_l9r_go_relaxed.owl ecdysis, protein-based cuticle This term was made obsolete because 'protein-based cuticle' is an unnecessary grouping term. GO:0018990|GO:0042395 True biological_process owl:Class GO:0014917 biolink:NamedThing obsolete positive regulation of diuresis by pressure natriuresis OBSOLETE. The process in which pressure natriuresis increases the rate of diuresis. tmpzr1t_l9r_go_relaxed.owl positive regulation of diuresis by pressure natriuresis GO:0035818 This term was made obsolete because its definition was inaccurate. True biological_process owl:Class GO:0005571 biolink:NamedThing obsolete untranslated RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl untranslated RNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0008978 biolink:NamedThing obsolete prepilin peptidase activity OBSOLETE. Catalysis of the cleavage of a Gly-Phe bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group, the methyl donor being S-adenosyl-L-methionine. tmpzr1t_l9r_go_relaxed.owl prepilin peptidase activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990366 biolink:NamedThing obsolete response to organic acid OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic acid. tmpzr1t_l9r_go_relaxed.owl response to organic acid This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-04-23T22:21:26Z True biological_process owl:Class GO:0016184 biolink:NamedThing obsolete synaptic vesicle retrieval OBSOLETE. Return of a vesicle from the postsynaptic membrane to presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle retrieval This term was made obsolete because it was wrongly defined. GO:0016192 True biological_process owl:Class GO:0010505 biolink:NamedThing obsolete positive regulation of cell cycle arrest in response to nitrogen starvation OBSOLETE. Any process that increases the frequency or rate of cell cycle arrest in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed. True biological_process owl:Class GO:0001619 biolink:NamedThing obsolete lysosphingolipid and lysophosphatidic acid receptor activity OBSOLETE. Combining with lysosphingolipid or lysophosphatidic acid to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl lysosphingolipid and lysophosphatidic acid receptor activity GO:0070915|GO:0038036 True molecular_function owl:Class GO:0036206 biolink:NamedThing obsolete regulation of histone gene expression OBSOLETE. Any process that modulates the frequency, rate or extent of expression of a histone-encoding gene. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. tmpzr1t_l9r_go_relaxed.owl regulation of expression of histone-encoding gene This term was obsoleted because it referes to a specific gene product. The gene product should be captured as an annotation extension using 'has input'. GO:0006357 bf 2012-04-24T05:01:28Z True biological_process owl:Class GO:0010194 biolink:NamedThing obsolete microRNA metabolic process OBSOLETE. The chemical reactions and pathways involving microRNA, a large family of 21-22 nucleotide non-coding RNAs with presumed post-transcriptional regulatory activity. tmpzr1t_l9r_go_relaxed.owl microRNA metabolic process GO:0035196 This term was made obsolete because it implies further processing of an end product rather than its production. True biological_process owl:Class GO:0005568 biolink:NamedThing obsolete mitochondrial rRNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mitochondrial rRNA Note that this term was deleted from GO rather than being made obsolete and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0009497 biolink:NamedThing obsolete 3Fe-4S/4Fe-4S electron transfer carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl 3Fe-4S/4Fe-4S electron transfer carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0005508 biolink:NamedThing obsolete copper/cadmium binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl copper/cadmium binding This term was made obsolete because it represents a composite function. GO:0005507|GO:0046870 True molecular_function owl:Class GO:0008167 biolink:NamedThing obsolete sigma virus replication OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl sigma virus replication GO:0019079 True biological_process owl:Class GO:1902880 biolink:NamedThing obsolete positive regulation of BMP signaling pathway involved in spinal cord association neuron specification OBSOLETE. Any process that activates or increases the frequency, rate or extent of BMP signaling pathway involved in spinal cord association neuron specification. tmpzr1t_l9r_go_relaxed.owl upregulation of BMP signaling pathway involved in spinal cord association neuron specification|up-regulation of BMP signaling pathway involved in spinal cord association neuron specification|up-regulation of BMP signalling pathway involved in spinal cord association neuron specification|up-regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|up-regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|upregulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|positive regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|activation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|upregulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|activation of BMP signalling pathway involved in spinal cord association neuron specification|positive regulation of BMP signalling pathway involved in spinal cord association neuron specification|activation of BMP signaling pathway involved in spinal cord association neuron specification|up regulation of BMP signaling pathway involved in spinal cord association neuron specification|activation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|up regulation of BMP signalling pathway involved in spinal cord association neuron specification|positive regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|up regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|up regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|upregulation of BMP signalling pathway involved in spinal cord association neuron specification The reason for obsoletion is that this term represents a GO-CAM model. mr 2014-04-03T15:25:43Z True biological_process owl:Class GO:2000686 biolink:NamedThing obsolete regulation of rubidium ion transmembrane transporter activity OBSOLETE. Any process that modulates the frequency, rate or extent of rubidium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl regulation of rubidium cation transmembrane transporter activity|regulation of Rb+ transmembrane transporter activity|regulation of rubidium transmembrane transporter activity This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-11T09:27:29Z True biological_process owl:Class GO:0008077 biolink:NamedThing obsolete Hsp70/Hsp90 organizing protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Hsp70/Hsp90 organising protein activity|Hsp70/Hsp90 organizing protein activity This term was made obsolete because it represents a specific gene product rather than a molecular function. GO:0030674 True molecular_function owl:Class GO:0005574 biolink:NamedThing obsolete DNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0001149 biolink:NamedThing obsolete transcription factor activity, bacterial-type RNA polymerase termination site sequence-specific binding OBSOLETE. Binding to a sequence of DNA that is a termination site for bacterial-type RNA polymerase in order to promote transcription termination by bacterial-type RNA polymerase. tmpzr1t_l9r_go_relaxed.owl bacterial-type RNA polymerase termination site sequence-specific DNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/16730 krc 2011-01-27T03:08:41Z True molecular_function owl:Class GO:0005061 biolink:NamedThing obsolete aryl hydrocarbon receptor nuclear translocator activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl aryl hydrocarbon receptor nuclear translocator activity This term was made obsolete because it represents a gene product. True molecular_function owl:Class OIO:hasAlternativeId biolink:NamedThing has_alternative_id tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0072362 biolink:NamedThing obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of glycolysis by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter The reason for obsoletion is that this term represented a GO-CAM model. mah 2010-11-16T02:59:32Z True biological_process owl:Class GO:0019881 biolink:NamedThing obsolete streptomycin susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl streptomycin susceptibility/resistance GO:0046679 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0001074 biolink:NamedThing obsolete transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding involved in preinitiation complex assembly OBSOLETE. Binding to a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to promote assembly of the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly|transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding involved in preinitiation complex assembly https://github.com/geneontology/go-ontology/issues/16554 This term has been obsoleted because it represents a GO-CAM model. krc 2010-10-22T02:30:43Z True molecular_function owl:Class GO:0019796 biolink:NamedThing obsolete nonprotein amino acid catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of any amino acid not found, or rarely found, in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl nonprotein amino acid catabolism|nonprotein amino acid catabolic process|nonprotein amino acid degradation|nonprotein amino acid breakdown GO:0009063 This term was made obsolete because it was a grouping term that was poorly defined and did not provide a particularly meaningful grouping, since even for those amino acids commonly found in proteins, not all molecules necessarily end up incorporated into proteins. The term also violated the principle of positivity. True biological_process owl:Class GO:0140579 biolink:NamedThing obsolete oxidoreductase activity, reducing metal ions OBSOLETE. Catalysis of an oxidation-reduction in which the metal ion is reduced. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20675 This term was obsoleted because it is an unnecessary grouping class. GO:0016722 pg 2021-01-13T06:55:01Z True molecular_function owl:Class GO:1905481 biolink:NamedThing obsolete cytoplasmic sequestering of protein involved in mitotic DNA replication checkpoint OBSOLETE. Any cytoplasmic sequestering of protein that is involved in mitotic DNA replication checkpoint. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. vw 2016-09-22T18:20:35Z True biological_process owl:Class GO:0035109 biolink:NamedThing obsolete imaginal disc-derived limb morphogenesis OBSOLETE. The process in which the anatomical structures of limbs that are derived from an imaginal disc are generated and organized. A limb is an appendage of an animal used for locomotion or grasping. An example of this process is found in Drosophila melanogaster. tmpzr1t_l9r_go_relaxed.owl imaginal disc-derived limb morphogenesis This term was made obsolete because the term 'limb' is not widely used in the insect community. In GO, 'limb' is used to describe the vertebrate hindlimbs and forelimbs. GO:0035114 True biological_process owl:Class GO:0006280 biolink:NamedThing obsolete mutagenesis OBSOLETE. The process by which genetic material undergoes a detectable and heritable structural change. There are three categories of mutation: genome mutations, involving addition or subtraction of one or more whole chromosomes; chromosome mutations, which alter the structure of chromosomes; and gene mutations, where the structure of a gene is altered at the molecular level. tmpzr1t_l9r_go_relaxed.owl mutagenesis This term was made obsolete because mutagenesis is not a valid biological process in which gene products would normally participate. Rather, mutations arise from DNA replication errors or damage by an extrinsic agent. GO:0051276|GO:0006281 True biological_process owl:Class GO:0019032 biolink:NamedThing obsolete viral glycoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl viral glycoprotein This term was made obsolete because it represents a type of gene product and not a location or complex. GO:0019031 True cellular_component owl:Class GO:1900417 biolink:NamedThing obsolete negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of transmembrane transport. tmpzr1t_l9r_go_relaxed.owl The term was obsoleted because it is better represented by a GO-CAM model. mah 2012-04-20T03:42:55Z True biological_process owl:Class GO:0009406 biolink:NamedThing obsolete virulence OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl virulence This term was made obsolete because it represents a phenotype rather than a biological process. GO:0090729|GO:0016032 True biological_process owl:Class GO:1990419 biolink:NamedThing obsolete response to elemental metal OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an elemental metal stimulus. tmpzr1t_l9r_go_relaxed.owl response to elemental metal This term was obsoleted at the TermGenie Gatekeeper stage. sl 2014-07-15T20:17:56Z True biological_process owl:Class GO:0016845 biolink:NamedThing obsolete other carbon-nitrogen lyase activity OBSOLETE. Catalysis of the cleavage of a carbon-nitrogen bond. Enzymes with this activity are 'miscellaneous' carbon-nitrogen lyases that cannot be grouped into one of the specific subclasses of the carbon-nitrogen lyases. tmpzr1t_l9r_go_relaxed.owl other carbon-nitrogen lyase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016840 True molecular_function owl:Class GO:0007108 biolink:NamedThing obsolete cytokinesis, initiation of separation OBSOLETE. The process involved in starting cell separation. tmpzr1t_l9r_go_relaxed.owl initiation of separation involved in cytokinesis|cytokinesis, initiation of separation This term was obsoleted because it was vaguely defined and had very likely been used in error. Consider the child terms of cytokinesis related to ring positioning, assembly, ring constriction etc. which would be more appropriate. True biological_process owl:Class GO:0005514 biolink:NamedThing obsolete calcium ion storage activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl calcium ion storage activity This term was made obsolete because it represents a biological process. GO:0005509|GO:0051208 True molecular_function owl:Class GO:0010703 biolink:NamedThing obsolete negative regulation of histolysis OBSOLETE. Any process that decreases the rate, frequency or extent of the breakdown of tissues; usually, if not always, accompanied by cell death. tmpzr1t_l9r_go_relaxed.owl inhibition of histolysis|down regulation of histolysis|down-regulation of histolysis|downregulation of histolysis This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants. GO:0008219|GO:0012501 True biological_process owl:Class GO:0035953 biolink:NamedThing obsolete regulation of dipeptide transport by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of dipeptide transport, by regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of dipeptide transport by regulation of transcription from Pol II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0071849 biolink:NamedThing obsolete G1 cell cycle arrest in response to nitrogen starvation OBSOLETE. The process in which the cell cycle is halted during G1 phase, as a result of deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20989 This term was obsoleted because it does not represent a specific process. mah 2010-09-10T02:46:11Z True biological_process owl:Class GO:0038080 biolink:NamedThing obsolete MAP kinase kinase activity involved in osmosensory signaling pathway OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that passes on a signal within an osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl MAP kinase kinase activity involved in osmosensory signalling pathway|MAP2K activity involved in osmosensory signaling pathway|MAPKK activity involved in osmosensory signaling pathway This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:41:31Z True molecular_function owl:Class GO:0015323 biolink:NamedThing obsolete type V protein secretor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl type V protein secretor activity This term was made obsolete because it does not accurately reflect the function of the proteins involved. True molecular_function owl:Class GO:0035559 biolink:NamedThing obsolete MAPKKK cascade involved in epidermal growth factor receptor signaling OBSOLETE. The process in which a signal is passed from the epidermal growth factor receptor (EGFR) to components of the MAPKKK cascade, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade involved in signaling from the EGFR|MAPKKK cascade involved in epidermal growth factor receptor signalling|MAPKKK cascade involved in epidermal growth factor receptor signaling This term was made obsolete because the syntax of the term is incorrect. GO:0038029 bf 2010-05-14T01:53:15Z True biological_process owl:Class GO:0052136 biolink:NamedThing obsolete negative chemotaxis on or near host OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0045715 biolink:NamedThing obsolete negative regulation of low-density lipoprotein particle receptor biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of low-density lipoprotein particle receptors. tmpzr1t_l9r_go_relaxed.owl negative regulation of low-density lipoprotein receptor biosynthetic process|down-regulation of low-density lipoprotein receptor biosynthetic process|negative regulation of low-density lipoprotein receptor biosynthesis|negative regulation of low-density lipoprotein receptor anabolism|negative regulation of low-density lipoprotein receptor synthesis|downregulation of low-density lipoprotein receptor biosynthetic process|negative regulation of low-density lipoprotein receptor formation|inhibition of low-density lipoprotein receptor biosynthetic process|down regulation of low-density lipoprotein receptor biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class RO:0002404 biolink:NamedThing causally downstream of tmpzr1t_l9r_go_relaxed.owl RO:0002404 external causally_downstream_of GO:0045758 biolink:NamedThing obsolete positive regulation of actin polymerization and/or depolymerization OBSOLETE. Any process that activates or increases the frequency, rate or extent of actin polymerization and/or depolymerization. tmpzr1t_l9r_go_relaxed.owl positive regulation of actin polymerization and/or depolymerization This term was made obsolete because it has been split. GO:0030836|GO:0030838 True biological_process owl:Class GO:0004928 biolink:NamedThing obsolete frizzled receptor activity OBSOLETE. Combining with a member of the Wnt-family of signaling molecules to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl frizzled receptor activity GO:0042813 This term was made obsolete because it represents a gene product rather than an activity. GO:0016055 True molecular_function owl:Class GO:1904500 biolink:NamedThing obsolete negative regulation of chromatin-mediated maintenance of transcription OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of chromatin-mediated maintenance of transcription. tmpzr1t_l9r_go_relaxed.owl inhibition of chromatin-mediated maintenance of transcription|down regulation of chromatin-mediated maintenance of transcription|downregulation of chromatin-mediated maintenance of transcription|down-regulation of chromatin-mediated maintenance of transcription This term was obsoleted because it represents a readout. nc 2015-07-24T09:31:14Z True biological_process owl:Class GO:1990602 biolink:NamedThing obsolete importin alpha-subunit nuclear import complex OBSOLETE. A trimeric protein complex which functions to transport the importin alpha-subunit into the nucleus through the nuclear pore to facilitate another round of mRNP incorporation and regulation. In Drosophila it consists of Cdm (Imp13), Mago and Tsu (Y14). tmpzr1t_l9r_go_relaxed.owl Cdm-Mago-Tsu complex|Importin13-Mago-Tsu complex The reason for obsoletion is that these terms include the substrate of the reaction. bhm 2015-01-09T16:28:54Z True cellular_component owl:Class GO:0004191 biolink:NamedThing obsolete barrierpepsin activity OBSOLETE. Catalysis of the selected cleavage of the Leu6-Lys7 bond in the pheromone alpha-mating factor. tmpzr1t_l9r_go_relaxed.owl barrierpepsin activity|barrier proteinase activity|Bar proteinase activity|extracellular 'barrier' protein activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0000362 biolink:NamedThing obsolete first U2-type spliceosomal transesterification activity OBSOLETE. Catalysis of the first transesterification reaction of U2-type spliceosomal mRNA splicing. The intron branch site adenosine is the nucleophile attacking the 5' splice site, resulting in cleavage at this position. In cis splicing, this is the step that forms a lariat structure of the intron RNA, which is still joined to the 3' exon. The catalytic site is thought to be formed by U6 and/or U2 snRNA, and/or associated proteins. tmpzr1t_l9r_go_relaxed.owl first U2-type spliceosomal transesterification activity|lariat formation, 5'-splice site cleavage GO:0000384 This term was made obsolete because the activities used in the U2- and U12-type complexes are the same. The cellular component ontology should (and does) represent the two different complexes, but the molecular function ontology should not. True molecular_function owl:Class GO:0015642 biolink:NamedThing obsolete bacteriolytic toxin activity OBSOLETE. Acts as to cause lysis of bacterial cells. tmpzr1t_l9r_go_relaxed.owl bacteriolytic toxin activity This term was made obsolete because it represents a class of gene products and not a molecular function. GO:0019835 True molecular_function owl:Class GO:0140316 biolink:NamedThing obsolete vesicular transport adaptor activity OBSOLETE. Binding directly to sorting signals in the cytosolic tails of transmembrane cargos (or transmembrane cargo receptors serving as recognition interfaces for lumenal cargos), to concentrate them into vesicles or tubules for transport via intracellular vesicular transport or the secretory pathway. tmpzr1t_l9r_go_relaxed.owl Thi sterm was obsoleted because it represented an unnecessary grouping class. pg 2019-03-28T12:03:57Z True molecular_function owl:Class GO:0030005 biolink:NamedThing obsolete cellular di-, tri-valent inorganic cation homeostasis OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent cations at the level of a cell. tmpzr1t_l9r_go_relaxed.owl cellular di-, tri-valent inorganic cation homeostasis GO:0072504|GO:0072503 True biological_process owl:Class GO:0010834 biolink:NamedThing obsolete telomere maintenance via telomere shortening OBSOLETE. Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and shortening the telomeric DNA. tmpzr1t_l9r_go_relaxed.owl telomere maintenance via telomere shortening This term was made obsolete because it represents a phenotype. GO:1903824 True biological_process owl:Class GO:0044789 biolink:NamedThing obsolete modulation by host of viral release from host cell OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the release of a virus with which it is infected, from its cells. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22168 GO:0019076 This term was obsoleted because there is no evidence that it is a regulated process. jl 2013-06-06T10:51:10Z True biological_process owl:Class GO:1901350 biolink:NamedThing obsolete cell-cell signaling involved in cell-cell junction organization OBSOLETE. Any cell-cell signaling that is involved in cell-cell junction organization. tmpzr1t_l9r_go_relaxed.owl cell-cell signalling involved in cell-cell junction organization|cell-cell signalling involved in intercellular junction assembly and maintenance|cell-cell signalling involved in cell-cell junction biogenesis|cell-cell signaling involved in intercellular junction assembly and maintenance|cell-cell signaling involved in cell-cell junction organisation|cell-cell signaling involved in cell-cell junction biogenesis|cell-cell signalling involved in cell-cell junction assembly and maintenance|cell-cell signalling involved in cell-cell junction organisation|cell-cell signaling involved in cell-cell junction assembly and maintenance The reasons for obsoletion are that: (1) the term was created in 2012 and it had been used for only 1 NAS annotation (UniProt) since then; and (2) it can be represented as a GO-CAM. rph 2012-09-11T09:15:04Z True biological_process owl:Class GO:0001318 biolink:NamedThing obsolete formation of oxidatively modified proteins involved in replicative cell aging OBSOLETE. Chemical reaction, between proteins and reactive oxygen species, that occurs in dividing cells as they age and leads to a variety of changes in the affected proteins, including increases in protein carbonyl content, oxidized methionine, protein hydrophobicity, and cross-linking. tmpzr1t_l9r_go_relaxed.owl formation of oxidatively modified proteins during replicative cell aging|formation of oxidatively modified proteins during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:1900405 biolink:NamedThing obsolete regulation of cell separation after cytokinesis by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of cytokinetic cell separation by regulation of transcription from RNA polymerase II promoter mah 2012-04-20T02:46:10Z True biological_process owl:Class GO:0003930 biolink:NamedThing obsolete RAS small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl RAS small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0001558 True molecular_function owl:Class GO:0010320 biolink:NamedThing obsolete arginine/lysine endopeptidase activity OBSOLETE. Catalysis of the hydrolysis of peptide linkages in oligopeptides or polypeptides by a reaction mechanism in which arginine or lysine residues act as nucleophiles. tmpzr1t_l9r_go_relaxed.owl arginine/lysine endopeptidase activity This term was made obsolete because it was defined incorrectly: there are no known peptidases using a catalytic mechanism involving arginine and lysine, and the Arabidopsis metacaspases that prompted addition of this term are in fact cysteine-type endopeptidases. GO:0004175|GO:0004197 True molecular_function owl:Class GO:0017170 biolink:NamedThing obsolete KU70 binding OBSOLETE. Binding to Ku70, a protein involved in non-homologous DNA end joining. tmpzr1t_l9r_go_relaxed.owl KU70 binding This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0052352 biolink:NamedThing obsolete biosynthesis by host of substance in symbiont OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont resulting in the formation of substances. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18787 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0005081 biolink:NamedThing obsolete receptor signaling protein serine/threonine phosphatase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl receptor signalling protein serine/threonine phosphatase signalling protein activity|receptor signaling protein serine/threonine phosphatase signaling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0035556 True molecular_function owl:Class GO:1904001 biolink:NamedThing obsolete positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of pyrimidine-containing compound salvage. tmpzr1t_l9r_go_relaxed.owl activation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter|up-regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter|up regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter|upregulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter|up-regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter|up regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter|activation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter|positive regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter|upregulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. pr 2015-03-05T21:25:42Z True biological_process owl:Class GO:0009412 biolink:NamedThing obsolete response to heavy metal OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heavy metal stimulus. Heavy metals are those metals that can form a coordination bond with a protein; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. tmpzr1t_l9r_go_relaxed.owl response to heavy metal This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0010038 True biological_process owl:Class GO:0033392 biolink:NamedThing obsolete actin homodimerization activity OBSOLETE. Binding to an identical actin monomer to form a homodimer. tmpzr1t_l9r_go_relaxed.owl actin dimerization activity|actin polymerizing activity|actin homodimerization activity This term was made obsolete because it was added in error; formation of an actin dimer is simply a transient step in the polymerization of actin. Also, this term may not represent a real molecular function in GO, but rather that a gene product (actin itself) is part of an actin homodimer transient protein complex. True molecular_function owl:Class GO:0015875 biolink:NamedThing obsolete vitamin or cofactor transport OBSOLETE. The directed movement of vitamins or cofactors into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl vitamin or cofactor transport This term was made obsolete because it was replaced by more specific terms. GO:0051180 True biological_process owl:Class GO:0035949 biolink:NamedThing obsolete positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of gluconeogenesis by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of glucose biosynthesis by downregulation of transcription from RNA polymerase II promoter|positive regulation of gluconeogenesis by downregulation of transcription from RNA polymerase II promoter|positive regulation of gluconeogenesis by negative regulation of transcription from Pol II promoter|positive regulation of glucose biosynthesis by negative regulation of transcription from Pol II promoter|positive regulation of gluconeogenesis by down regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthetic process by down regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthetic process by downregulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthetic process by down-regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthesis by negative regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthetic process by negative regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthetic process by negative regulation of transcription from Pol II promoter|positive regulation of gluconeogenesis by inhibition of transcription from RNA polymerase II promoter|positive regulation of gluconeogenesis by down-regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthesis by down-regulation of transcription from RNA polymerase II promoter|positive regulation of glucose biosynthesis by down regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0009935 biolink:NamedThing obsolete nutrient import OBSOLETE. The directed movement of nutrients into a cell or organelle. tmpzr1t_l9r_go_relaxed.owl nutrient import|nutrient uptake This term was made obsolete because "nutrient" is not defined, and does not have a consistent meaning. GO:0006810 True biological_process owl:Class GO:1902581 biolink:NamedThing obsolete multi-organism cellular localization OBSOLETE. A cellular localization which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism cellular localization https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-18T14:04:41Z True biological_process owl:Class GO:0052401 biolink:NamedThing obsolete induction by organism of defense-related symbiont reactive oxygen species production OBSOLETE. The activation by an organism of the production of reactive oxygen species as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of defense-related symbiont ROS production|activation by organism of defense-related symbiont ROS production|activation by organism of defense-related symbiont reactive oxidative species production|activation by organism of defense-related symbiont ROI production|activation by organism of defense-related symbiont reactive oxygen intermediate production|induction by organism of defense-related symbiont reactive oxygen intermediate production|induction by organism of defense-related symbiont metabolic burst|activation by organism of defense-related symbiont oxidative burst|activation by organism of defense-related symbiont metabolic burst|induction by organism of defense-related symbiont oxidative burst|induction by organism of defense-related symbiont AOS production|activation by organism of defense-related symbiont respiratory burst|induction by organism of defense-related symbiont ROI production|activation by organism of defense-related symbiont reactive oxygen species production|induction by organism of defense-related symbiont respiratory burst|induction by organism of defense-related symbiont active oxygen species production|activation by organism of defense-related symbiont active oxygen species production|induction by organism of defense-related symbiont reactive oxygen species production|activation by organism of defense-related symbiont AOS production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0003377 biolink:NamedThing obsolete regulation of apoptosis by sphingosine-1-phosphate signaling pathway OBSOLETE. A sphingosine-1-phosphate signaling pathway that modulates the rate, frequency, or extent of apoptosis. tmpzr1t_l9r_go_relaxed.owl regulation of apoptosis by sphingolipid signaling pathway|regulation of apoptosis by sphingolipid signalling pathway The reason for obsoletion is that this term represents a GO-CAM model. dph 2009-12-09T06:32:22Z True biological_process owl:Class GO:0009980 biolink:NamedThing obsolete glutamate carboxypeptidase activity OBSOLETE. Catalysis of the release of C-terminal glutamate residues from a wide range of N-acylating groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl and pteroyl groups. tmpzr1t_l9r_go_relaxed.owl carboxypeptidase G2 activity|N-pteroyl-L-glutamate hydrolase activity|carboxypeptidase G1 activity|carboxypeptidase G activity|glutamyl carboxypeptidase activity|glutamate carboxypeptidase activity GO:0004180 This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined. True molecular_function owl:Class RO:0002334 biolink:NamedThing regulated by tmpzr1t_l9r_go_relaxed.owl RO:0002334 external regulated_by GO:0100032 biolink:NamedThing obsolete positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phospholipid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class RO:0002356 biolink:NamedThing results in specification of tmpzr1t_l9r_go_relaxed.owl RO:0002356 external results_in_specification_of GO:0019109 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0031611 biolink:NamedThing obsolete ER proteasome regulatory particle, base subcomplex OBSOLETE. The subunits of the regulatory particle that directly associate with the core complex of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0016839 biolink:NamedThing obsolete other carbon-oxygen lyase activity OBSOLETE. Catalysis of the cleavage of a carbon-oxygen bond. Enzymes with this activity are 'miscellaneous' carbon-oxygen lyases that cannot be grouped into one of the specific subclasses of the carbon-oxygen lyases. tmpzr1t_l9r_go_relaxed.owl other carbon-oxygen lyase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016835 True molecular_function owl:Class GO:0085010 biolink:NamedThing obsolete interaction with host mediated by secreted substance entering host via endocytosis OBSOLETE. An interaction with the host organism mediated by a secreted substance from the symbiont entering host cells via endocytosis of the substance. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:12:31Z True biological_process owl:Class GO:0006126 biolink:NamedThing obsolete other pathways of electron transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl other pathways of electron transport GO:0022900 This term was made obsolete because it was an unnecessary grouping term. True biological_process owl:Class GO:0044049 biolink:NamedThing obsolete interaction with host via protein secreted by type VI secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type VI secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0007109 biolink:NamedThing obsolete cytokinesis, completion of separation OBSOLETE. The process of finishing cell separation, which results in two physically separated cells. tmpzr1t_l9r_go_relaxed.owl cytokinesis, completion of separation|completion of separation involved in cytokinesis This term was obsoleted because it was vaguely defined and had very likely been used in error. Consider the child terms of cytokinesis related to ring positioning, assembly, ring constriction etc. which would be more appropriate. True biological_process owl:Class GO:0097755 biolink:NamedThing obsolete positive regulation of blood vessel diameter OBSOLETE. Any process that increases the diameter of blood vessels. tmpzr1t_l9r_go_relaxed.owl positive regulation of vasodilation This term was obsoleted because it corresponded to an existing term, GO:0042311 ; vasodilation. pr 2017-02-08T15:33:21Z True biological_process owl:Class GO:0005808 biolink:NamedThing obsolete Golgi-plasma membrane transport vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Golgi-plasma membrane transport vesicle This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; a personal communication from John Armstrong indicated that a replacement term was not required, as TGN-Golgi transport is likely to be mediated by tubules rather than vesicles. GO:0030133 True cellular_component owl:Class GO:0075309 biolink:NamedThing obsolete negative regulation of growth or development of symbiont on or near host surface OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the increase in the symbiont's size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl negative regulation of growth or development of symbiont on or near host surface This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class RO:0002233 biolink:NamedThing has input tmpzr1t_l9r_go_relaxed.owl RO:0002233 external has_input GO:2000976 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in detection of glucose OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in detection of glucose. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol II promoter involved in detection of glucose|regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose detection|regulation of global transcription from Pol II promoter involved in detection of glucose|regulation of transcription from RNA polymerase II promoter involved in glucose detection|global transcription regulation from Pol II promoter involved in glucose detection|regulation of global transcription from Pol II promoter involved in glucose perception|regulation of transcription from RNA polymerase II promoter, global involved in glucose sensing|regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose perception|regulation of transcription from Pol II promoter involved in glucose sensing|regulation of transcription from RNA polymerase II promoter, global involved in glucose perception|global transcription regulation from Pol II promoter involved in detection of glucose|regulation of gene-specific transcription from RNA polymerase II promoter involved in detection of glucose|regulation of transcription from RNA polymerase II promoter, global involved in glucose detection|regulation of transcription from Pol II promoter involved in glucose perception|regulation of transcription from RNA polymerase II promoter involved in glucose sensing|regulation of global transcription from Pol II promoter involved in glucose sensing|regulation of transcription from RNA polymerase II promoter involved in glucose perception|regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose sensing|global transcription regulation from Pol II promoter involved in glucose perception|regulation of global transcription from Pol II promoter involved in glucose detection|global transcription regulation from Pol II promoter involved in glucose sensing|regulation of transcription from RNA polymerase II promoter, global involved in detection of glucose|regulation of transcription from Pol II promoter involved in glucose detection This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization. GO:0051594|GO:0006357 vk 2011-08-02T05:06:52Z True biological_process owl:Class GO:0003783 biolink:NamedThing obsolete barbed-end actin capping activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl barbed-end actin capping activity GO:0051016 This term was made obsolete because it describes a biological process. True molecular_function owl:Class GO:0075104 biolink:NamedThing obsolete positive regulation by host of symbiont calcium or calmodulin-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of symbiont Ca++ or calmodulin-mediated signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0018334 biolink:NamedThing obsolete enzyme active site formation via O4'-phospho-L-tyrosine OBSOLETE. The transient phosphorylation of peptidyl-tyrosine to form O-phospho-L-tyrosine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0039 This term was obsoleted because it was created by error: O4'-phospho-L-tyrosine is a post-translational modification, see PMID:1725475. True biological_process owl:Class GO:0030996 biolink:NamedThing obsolete mitotic cell cycle arrest in response to nitrogen starvation OBSOLETE. The process in which the mitotic cell cycle is halted during one of the normal phases (G1, S, G2, M) as a result of deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl cell cycle arrest in response to nitrogen starvation This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed. True biological_process owl:Class GO:0033125 biolink:NamedThing obsolete negative regulation of GTP catabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl negative regulation of GTP degradation|negative regulation of GTP breakdown|negative regulation of GTP catabolism The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0034260 True biological_process owl:Class GO:0046759 biolink:NamedThing obsolete lytic virus budding from plasma membrane OBSOLETE. A form of viral release in which the nucleocapsid evaginates from the host nuclear membrane system, resulting in envelopment of the virus and cell lysis. tmpzr1t_l9r_go_relaxed.owl lytic viral budding from plasma membrane|lytic virus budding from plasma membrane|lytic plasma membrane viral budding This term was made obsolete because it does not appear to correspond to a real biological process. True biological_process owl:Class GO:0072475 biolink:NamedThing obsolete detection of stimulus involved in mitotic spindle checkpoint OBSOLETE. The series of events in which information about whether the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle, is received and converted into a molecular signal, contributing to a mitotic cell cycle spindle checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle spindle checkpoint sensor mechanism|mitotic cell cycle spindle checkpoint sensor process|detection of stimulus involved in mitotic cell cycle spindle checkpoint|sensing involved in mitotic cell cycle spindle checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T11:49:55Z True biological_process owl:Class GO:0045872 biolink:NamedThing obsolete positive regulation of rhodopsin gene expression OBSOLETE. Any process that activates or increases the frequency, rate or extent of rhodopsin gene expression. tmpzr1t_l9r_go_relaxed.owl up regulation of rhodopsin gene activity|positive regulation of rhodopsin gene activity|activation of rhodopsin gene activity|up-regulation of rhodopsin gene activity|stimulation of rhodopsin gene activity|upregulation of rhodopsin gene activity This term was obsoleted because it referes to a specific gene product. The gene product should be captured as an annotation extension using 'has input'. GO:0045944 True biological_process owl:Class GO:0009872 biolink:NamedThing obsolete gametophytic self-incompatibility OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place. tmpzr1t_l9r_go_relaxed.owl gametophytic self-incompatibility This term was made obsolete because it represents a phenotype. True biological_process owl:Class GO:0023055 biolink:NamedThing obsolete signal initiation by peptide hormone OBSOLETE. The process in which a signal is initiated by a peptide hormone. tmpzr1t_l9r_go_relaxed.owl signal initiation by peptide hormone This term was made obsolete because the meaning of the term is ambiguous. GO:0009755|GO:0005179|GO:0004879 2010-02-16T09:30:50Z True biological_process owl:Class GO:0007627 biolink:NamedThing obsolete larval behavior (sensu Insecta) OBSOLETE. Behavior in a larval form of an organism, an immature organism that must undergo metamorphosis to assume adult characteristics, as seen in insects. tmpzr1t_l9r_go_relaxed.owl larval behavior (sensu Insecta) GO:0030537 This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. True biological_process owl:Class GO:0009003 biolink:NamedThing obsolete signal peptidase activity OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor. tmpzr1t_l9r_go_relaxed.owl signal peptidase activity GO:0008233 This term was made obsolete because 'signal peptide' is difficult to define unambiguously, and because the term refers to gene products. True molecular_function owl:Class GO:0006823 biolink:NamedThing obsolete heavy metal ion transport OBSOLETE. The directed movement of heavy metal ions into, out of or within a cell, or between cells. Heavy metals are those that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. tmpzr1t_l9r_go_relaxed.owl heavy metal ion transport This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0030001 True biological_process owl:Class GO:0009770 biolink:NamedThing obsolete primary charge separation in photosystem I OBSOLETE. Energized reaction-center P700 chlorophylls on photosystem I donate an electron to a loosely bound Quinone acceptor molecule X, on the stromal surface of the thylakoid membrane. The result is charge separation; a negative charge on the stromal side of the thylakoid membrane and a positive charge on the luminal side. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a mechanism, and is outside the scope of GO. True biological_process owl:Class GO:0009492 biolink:NamedThing obsolete 2Fe-2S electron transfer carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl 2Fe-2S electron transfer carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0017163 biolink:NamedThing obsolete basal transcription repressor activity OBSOLETE. Any transcription regulator activity that prevents or downregulates basal transcription. Basal transcription results from transcription that is controlled by the minimal complement of proteins necessary to reconstitute transcription from a minimal promoter. tmpzr1t_l9r_go_relaxed.owl basal transcription repressor activity This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0001227|GO:0045892|GO:0001217 True molecular_function owl:Class GO:0018286 biolink:NamedThing obsolete iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide OBSOLETE. The incorporation of iron into a 3Fe-3S iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide. The three-iron three-sulfur cluster probably does not exist except as an intermediate form. tmpzr1t_l9r_go_relaxed.owl iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide|iron incorporation into iron-sulphur cluster via tris-L-cysteinyl triiron trisulphide This term was made obsolete because the three-iron three-sulfur cluster is now thought not to exist except possibly as an intermediate form. GO:0018283|GO:0018198 True biological_process owl:Class GO:0000200 biolink:NamedThing obsolete inactivation of MAPK activity involved in cell wall organization or biogenesis OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl cell wall biogenesis, inactivation of MAPK activity|cell wall biogenesis, termination of MAPK activity|inactivation of MAPK activity involved in cell wall integrity|inactivation of MAPK activity involved in cell wall organization or biogenesis|termination of MAPK activity during cell wall biogenesis https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0043913 biolink:NamedThing obsolete chromosome segregation-directing complex OBSOLETE. A trimeric protein complex which in E. coli is composed of the subunits MreB, MreC and MreD. The complex directs longitudinal cell wall synthesis, maintaining cell morphology. tmpzr1t_l9r_go_relaxed.owl MreBCD complex|chromosome segregation directing complex|longitudinal peptidoglycan synthesis-directing complex https://github.com/geneontology/go-ontology/issues/19794 This term was obsoleted because the three proteins mentioned in the definition are not part of the same complex. True cellular_component owl:Class GO:0042798 biolink:NamedThing obsolete protein neddylation during NEDD8 class-dependent protein catabolic process OBSOLETE. Covalent attachment of the ubiquitin-like protein NEDD8 (or equivalent protein) to another protein, as a part of NEDD8-dependant protein catabolism. tmpzr1t_l9r_go_relaxed.owl protein neddylation during RUB1-dependent protein catabolism|protein neddylation during NEDD8 class-dependent protein degradation|protein neddylation during NEDD8 class-dependent protein catabolism|protein neddylation during NEDD8 class-dependent protein catabolic process|protein neddylation during NEDD8 class-dependent protein breakdown|protein neddylation during RUB1-dependent protein catabolic process This term was made obsolete because NEDD8-class tags do not target proteins for proteolytic destruction. GO:0045116 True biological_process owl:Class GO:0015342 biolink:NamedThing obsolete zinc, iron permease activity OBSOLETE. Catalysis of the reaction: (Zn2+ or Fe2+)(out) = (Zn2+ or Fe2+)(in), probably powered by proton motive force. tmpzr1t_l9r_go_relaxed.owl zinc, iron permease activity This term was made obsolete because it represents more than one molecular function. GO:0005385|GO:0005381 True molecular_function owl:Class GO:0075102 biolink:NamedThing obsolete negative regulation by host of symbiont MAP kinase-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont MAP kinase-mediated signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0015316 biolink:NamedThing obsolete nitrite/nitrate porter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nitrite/nitrate porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015112|GO:0015113|GO:0015291 True molecular_function owl:Class GO:0004628 biolink:NamedThing obsolete calcium-independent cytosolic phospholipase A2 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl calcium-independent cytosolic phospholipase A2 activity This term was made obsolete because it represents component and function information. GO:0005829|GO:0047499 True molecular_function owl:Class GO:0001685 biolink:NamedThing obsolete axonemal dynein intermediate light chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl axonemal dynein intermediate light chain GO:0005858 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0010539 biolink:NamedThing obsolete Hsp27 protein inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the Hsp27 molecular chaperone. tmpzr1t_l9r_go_relaxed.owl Hsp27 protein inhibitor activity GO:0051008 This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp27 protein activity'. GO:0051787|GO:0006457|GO:0051082 True molecular_function owl:Class GO:0016873 biolink:NamedThing obsolete other isomerase activity OBSOLETE. A grouping term for isomerases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl other isomerase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016853 True molecular_function owl:Class GO:1903151 biolink:NamedThing obsolete carbohydrate transmembrane transporter activity involved in carbohydrate import into cell OBSOLETE. Any carbohydrate transmembrane transporter activity that is involved in carbohydrate import into cell. tmpzr1t_l9r_go_relaxed.owl sugar transporter involved in carbohydrate import into cell|carbohydrate transmembrane transporter activity involved in carbohydrate import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:42Z True molecular_function owl:Class GO:0000067 biolink:NamedThing obsolete DNA replication and chromosome cycle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA replication and chromosome cycle This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful entity. GO:0006260|GO:0007059|GO:0051276 True biological_process owl:Class GO:0001152 biolink:NamedThing obsolete transcription factor activity, RNA polymerase III type 1 promoter sequence-specific binding, TFIIIC recruiting OBSOLETE. The function of binding to a specific DNA sequence motif in a type 1 RNA polymerase III (Pol III) promoter in order to recruit the transcription factor TFIIIC to the promoter. tmpzr1t_l9r_go_relaxed.owl type 1 RNA polymerase III promoter recognition|RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIC recruiting transcription factor activity|TFIIIA activity This term was made obsolete in the 2018 Transcription branch revision. This represents the activity of TFIIIA only. krc 2011-01-27T04:18:21Z True molecular_function owl:Class GO:1900423 biolink:NamedThing obsolete positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of mating type switching. tmpzr1t_l9r_go_relaxed.owl stimulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter|up regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter|activation of mating type switching by positive regulation of transcription from RNA polymerase II promoter|up-regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter|upregulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. krc 2012-04-24T05:50:51Z True biological_process owl:Class GO:1905507 biolink:NamedThing obsolete cytoplasmic sequestering of protein involved in mitotic G2 DNA damage checkpoint OBSOLETE. Any cytoplasmic sequestering of protein that is involved in mitotic G2 DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. vw 2016-09-28T12:20:28Z True biological_process owl:Class GO:0103113 biolink:NamedThing obsolete glucosyl-oleandomycin-exporting ATPase activity OBSOLETE. Catalysis of the reaction: glucosyl-oleandomycin + ATP + H2O <=> glucosyl-oleandomycin + ADP + hydrogenphosphate + H+. tmpzr1t_l9r_go_relaxed.owl MetaCyc:TRANS-RXN-220 This term was obsoleted because it represents a substrate-specific version of the general term GO:0008559 ATPase-coupled xenobiotic transmembrane transporter activity. True molecular_function owl:Class GO:0030830 biolink:NamedThing obsolete negative regulation of cGMP catabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cGMP. tmpzr1t_l9r_go_relaxed.owl down regulation of cGMP catabolic process|down-regulation of cGMP catabolic process|downregulation of cGMP catabolic process|negative regulation of cGMP degradation|negative regulation of cGMP breakdown|negative regulation of cGMP catabolism|inhibition of cGMP catabolic process The reason for obsoletion is that the term represents the regulation of a signaling pathway, and not regulation of metabolism. True biological_process owl:Class GO:1901144 biolink:NamedThing obsolete insulin biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of insulin. tmpzr1t_l9r_go_relaxed.owl insulin biosynthetic process|insulin anabolism|insulin synthesis|insulin biosynthesis|insulin formation pm 2012-07-13T12:33:10Z True biological_process owl:Class GO:0006838 biolink:NamedThing obsolete allantoin/allantoate transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl allantoin/allantoate transport This term was made obsolete because it is a composite term that represents two individual processes. GO:0015719|GO:0015720 True biological_process owl:Class GO:0100051 biolink:NamedThing obsolete positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates meiotic nuclear division. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052184 biolink:NamedThing obsolete modulation by organism of symbiont hormone or growth regulator levels OBSOLETE. The alteration by an organism of the levels of hormones or growth regulators in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont hormone or growth regulator levels This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0023018 biolink:NamedThing obsolete T cell activation of signal transmission via diffusible molecule OBSOLETE. The process in which signal transmission via a diffusible molecule is initiated by a T cell. tmpzr1t_l9r_go_relaxed.owl T cell activation of signal transmission via diffusible molecule This term was made obsolete because the meaning of the term is ambiguous. 2010-02-16T09:30:50Z True biological_process owl:Class GO:0030086 biolink:NamedThing obsolete PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex GO:0009655 This term was made obsolete because the 'complex' it refers to contains only one gene product. True cellular_component owl:Class GO:0017165 biolink:NamedThing obsolete dipeptidase E activity OBSOLETE. Catalysis of the hydrolysis of dipeptides Asp-Xaa; does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. tmpzr1t_l9r_go_relaxed.owl aspartyl dipeptidase activity|dipeptidase E activity|peptidase E activity|PepE gene product (Salmonella typhimurium) activity|alpha-aspartyl dipeptidase activity GO:0016805 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0043835 biolink:NamedThing obsolete uracil/thymine dehydrogenase activity OBSOLETE. Catalysis of the reactions: uracil + H2O + acceptor = barbiturate + reduced acceptor; and thymine + H2O + acceptor = 5-methylbarbiturate + reduced acceptor. tmpzr1t_l9r_go_relaxed.owl uracil oxidase activity|uracil-thymine oxidase activity|uracil/thymine dehydrogenase activity|uracil:acceptor oxidoreductase activity EC:1.17.99.4 This term was made obsolete because it represents two separate molecular functions. GO:0050383|GO:0052620 True molecular_function owl:Class GO:0044132 biolink:NamedThing obsolete development of symbiont on or near host OBSOLETE. The progression of a symbiont from an initial condition to a later condition, within the cells or tissues of its host organism. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is this term represents both a process and a component. jl 2009-08-04T03:36:02Z True biological_process owl:Class GO:1900528 biolink:NamedThing obsolete regulation of cell shape involved in G1 to G0 transition OBSOLETE. Any regulation of cell shape that is involved in G1 to G0 transition. tmpzr1t_l9r_go_relaxed.owl regulation of cell shape involved in G1 to G0 transition|regulation of cell shape involved in stationary phase|regulation of cell shape involved in establishment of cell quiescence|regulation of cell shape involved in cell cycle quiescence|regulation of cell shape involved in G1/G0 transition This term was made obsolete because it represents a phenotype. al 2012-05-08T10:42:45Z True biological_process owl:Class GO:0039565 biolink:NamedThing obsolete suppression by virus of host STAT1 activity by positive regulation of STAT1 catabolic process OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host STAT1 (signal transducer and activator of transcription-1) by promoting the ubiquitin-dependent degradation of STAT1, mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl targeting STAT1 for proteasome-mediated degradation|promotion by virus of proteosome-dependent STAT1 degradation|suppression by virus of host STAT1 activity by positive promotion of STAT1 proteasome-mediated degradation The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T02:57:36Z True biological_process owl:Class GO:0008004 biolink:NamedThing obsolete lamina reticularis OBSOLETE. A layer of the basal lamina that contains collagen fibrils and connects the basal lamina to the underlying connective tissue. tmpzr1t_l9r_go_relaxed.owl GO:0005604 This term was obsoleted because as a layer of the basement membrane, the lamina reticularis is thought to be an artefact. See PMID:24137544 and PMID:8061357. True cellular_component owl:Class GO:0015983 biolink:NamedThing obsolete symport OBSOLETE. The process of solute translocation in which two solutes equilibrate across an osmotic barrier, and the translocation of one solute is coupled to the translocation of the other in the same direction. tmpzr1t_l9r_go_relaxed.owl symport GO:0015293 This term was made obsolete because it represents a molecular function rather than a biological process. True biological_process owl:Class GO:0030191 biolink:NamedThing obsolete Hsp70/Hsc70 protein inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of chaperones of the Hsp70/Hsc70 class. tmpzr1t_l9r_go_relaxed.owl Hsp70/Hsc70 protein inhibitor activity This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp70/Hsc70 protein activity'. GO:0051787|GO:0006457|GO:0051082 True molecular_function owl:Class GO:0009874 biolink:NamedThing obsolete sporophytic self-incompatibility OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place. tmpzr1t_l9r_go_relaxed.owl sporophytic self-incompatibility This term was made obsolete because it represents a phenotype. True biological_process owl:Class GO:0042028 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0016718 biolink:NamedThing obsolete oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous OBSOLETE. A grouping term for oxidoreductases, acting on paired donors with incorporation or reduction of molecular oxygen, that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous This term was made obsolete because it was an unnecessary grouping term. GO:0016705 True molecular_function owl:Class GO:1990507 biolink:NamedThing obsolete ATP-independent chaperone mediated protein folding OBSOLETE. The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone, and independent of ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21930 This term was obsoleted because it represents a molecular function. GO:0044183|GO:0006457 rb 2014-10-01T23:55:05Z True biological_process owl:Class GO:0010195 biolink:NamedThing obsolete microRNA biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of microRNA, a large family of 21-22 nucleotide non-coding RNAs with presumed post-transcriptional regulatory activity. tmpzr1t_l9r_go_relaxed.owl microRNA biosynthesis|microRNA biosynthetic process|microRNA formation|miRNA biosynthesis|miRNA biosynthetic process|microRNA synthesis|microRNA anabolism GO:0035196 This term was made obsolete because it represents a process that is not known to occur. True biological_process owl:Class GO:0005207 biolink:NamedThing obsolete extracellular matrix glycoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl extracellular matrix glycoprotein This term was made obsolete because it describes localization and modification rather than activity. GO:0005201 True molecular_function owl:Class GO:0016468 biolink:NamedThing obsolete sodium-translocating F-type ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + Na+(in) = ADP + phosphate + Na+(out). Found in eukaryotic mitochondria and chloroplasts and in bacteria. tmpzr1t_l9r_go_relaxed.owl sodium-translocating F-type ATPase activity|ATP synthase This term was made obsolete because it represents a gene product. GO:0046932|GO:0046962 True molecular_function owl:Class GO:0075158 biolink:NamedThing obsolete negative regulation of G protein-coupled receptor signaling pathway in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont G protein-coupled receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of G-protein coupled receptor protein signaling pathway in response to host|negative regulation of symbiont G-protein coupled receptor protein-mediated signal transduction in response to host|negative regulation of G-protein coupled receptor protein signalling pathway in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:2000135 biolink:NamedThing obsolete positive regulation of regulation of secondary heart field cardioblast proliferation OBSOLETE. Any process that activates or increases the frequency, rate or extent of regulation of secondary heart field cardioblast proliferation. tmpzr1t_l9r_go_relaxed.owl positive regulation of regulation of secondary heart field cardioblast proliferation|positive regulation of regulation of second heart field cardioblast proliferation This term was made obsolete because it makes no sense and was added in error. dph 2010-09-29T12:40:37Z True biological_process owl:Class GO:0060852 biolink:NamedThing obsolete regulation of transcription involved in venous endothelial cell fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate and contributes to a cell adopting a venous endothelial cell fate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0060845|GO:0006357 dph 2009-08-12T11:49:49Z True biological_process owl:Class GO:0045865 biolink:NamedThing obsolete regulation of recombination within rDNA repeats OBSOLETE. Any process that modulates the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl regulation of recombination within rDNA repeats GO:0000019 This term was made obsolete because it describes a substrate-specific process. True biological_process owl:Class GO:1903993 biolink:NamedThing obsolete negative regulation of protein stabilization OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of protein stabilization. tmpzr1t_l9r_go_relaxed.owl down-regulation of protein sequestering|inhibition of lysosomal protein stabilization|inhibition of protein stabilization activity|down-regulation of lysosomal protein stabilization|down regulation of positive regulation of protein stability|negative regulation of positive regulation of protein stability|down regulation of lysosomal protein stabilization|downregulation of protein stabilization|negative regulation of protein stabilization|down regulation of protein stabilization|down regulation of protein sequestering|inhibition of protein stabilization|down-regulation of positive regulation of protein stability|downregulation of protein sequestering|downregulation of positive regulation of protein stability|down-regulation of protein stabilization|negative regulation of lysosomal protein stabilization|down regulation of protein stabilization activity|downregulation of lysosomal protein stabilization|inhibition of positive regulation of protein stability|negative regulation of protein stabilization activity|downregulation of protein stabilization activity|negative regulation of protein sequestering|inhibition of protein sequestering|down-regulation of protein stabilization activity This term was made obsolete because it was created in error. GO:0031648 pga 2015-03-05T13:32:55Z True biological_process owl:Class GO:0051858 biolink:NamedThing obsolete avoidance of symbiont defenses OBSOLETE. Any process, either constitutive or induced, by which an organism evades, minimizes, or suppresses the effects of its symbiont organism's defense(s). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14862 This term was made obsolete because it is not relevant for the host in a host-symbiont interaction. True biological_process owl:Class GO:0051802 biolink:NamedThing obsolete regulation of cytolysis in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of cytolysis of cells in other organism involved in symbiotic interaction|regulation of cytolysis of cells in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0075050 biolink:NamedThing obsolete positive regulation of symbiont cell wall strengthening involved in entry into host OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont cell wall strengthening during entry into host The reason for the obsoletion is that there is no evidence that those processes exist. True biological_process owl:Class GO:0018330 biolink:NamedThing obsolete enzyme active site formation via N6-(phospho-5'-guanosine)-L-lysine OBSOLETE. The transient guanylylation of lysine to form N6-(phospho-5'-guanosine)-L-lysine, found in the guanylyltransferase active site of mRNA capping enzyme. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0228 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:6092377. GO:0070568 True biological_process owl:Class GO:1990847 biolink:NamedThing obsolete peptide pheromone transmembrane export involved in positive regulation of conjugation with cellular fusion OBSOLETE. The directed movement of a peptide pheromone across a membrane and out of a cell by a secretion or export pathway used solely for the export of peptide pheromones that contributes to a conjugation process that results in the union of cellular and genetic information from compatible mating types. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20310 This term was obsoleted because it represents a BP in a BP and should be captured with a GO-CAM model al 2015-09-08T15:23:26Z True biological_process owl:Class GO:0045427 biolink:NamedThing obsolete enzyme active site formation via (phospho-5'-guanosine)-L-histidine OBSOLETE. The transient guanylylation of peptidyl-histidine to form (phospho-5'-guanosine)-L-histidine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:10529169. GO:0036428 True biological_process owl:Class GO:0075232 biolink:NamedThing obsolete positive regulation of spore movement on or near host OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0016466 biolink:NamedThing obsolete hydrogen-translocating A-type ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out). Found in archae. tmpzr1t_l9r_go_relaxed.owl proton-translocating A-type ATPase activity|hydrogen-translocating A-type ATPase activity GO:0046961 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008268 biolink:NamedThing obsolete receptor signaling protein tyrosine kinase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl receptor signaling protein tyrosine kinase signaling protein activity|receptor signalling protein tyrosine kinase signalling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0035556 True molecular_function owl:Class GO:0075179 biolink:NamedThing obsolete negative regulation of calcium or calmodulin-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont calcium or calmodulin-mediated signal transduction in response to host|negative regulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0004584 biolink:NamedThing obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity OBSOLETE. Catalysis of the transfer of an alpha-D-mannosyl residue from dolichyl-phosphate D-mannose into membrane lipid-linked oligosaccharide. tmpzr1t_l9r_go_relaxed.owl dolichol phosphomannose-oligosaccharide-lipid mannosyltransferase activity|dolichyl-phosphate-D-mannose:glycolipid alpha-D-mannosyltransferase activity|oligomannosylsynthase activity https://github.com/geneontology/go-ontology/issues/16022 MetaCyc:2.4.1.130-RXN|EC:2.4.1.130 The reason for obsoletion is that this activity has been replaced by 4 activities in EC, EC:2.4.1.258, EC:2.4.1.259, EC:2.4.1.260, and EC:2.4.1.261. GO:0052925|GO:0052926|GO:0052918|GO:0052917 True molecular_function owl:Class GO:0005028 biolink:NamedThing obsolete CD40 receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl CD40 receptor activity This term was made obsolete because it describes the receptor type, and not an activity. GO:0042615 True molecular_function owl:Class GO:0004285 biolink:NamedThing obsolete proprotein convertase 1 activity OBSOLETE. Catalysis of the release of protein hormones, neuropeptides and renin from their precursors, generally by cleavage of -Lys-Arg-Xaa at the Arg-Xaa bond. tmpzr1t_l9r_go_relaxed.owl neuroendocrine convertase 1 activity|prohormone convertase 3|NEC 1 activity|prohormone convertase I activity|proprotein convertase 1 activity|PC1 activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0100048 biolink:NamedThing obsolete positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylcholine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:2000461 biolink:NamedThing obsolete negative regulation of eukaryotic cell surface binding OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of eukaryotic cell surface binding. tmpzr1t_l9r_go_relaxed.owl negative regulation of eukaryotic cell surface binding This term was made obsolete because the cell surface binding terms are ambiguous grouping terms and were causing confusion. GO:0031347|GO:1900121 yaf 2011-03-04T12:00:26Z True biological_process owl:Class GO:0000202 biolink:NamedThing obsolete MAPKKK cascade during sporulation (sensu Saccharomyces) OBSOLETE. MAPKKK cascade involved in transduction of signal promoting sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:1990628 biolink:NamedThing obsolete Sigma-E factor negative regulation complex OBSOLETE. A protein complex consisting of RseA, RseB and RpoE. It form the inactive form of the sigma-E transcription factor. In response to stress, outer membrane proteins accumulate in the periplasm and activate cleavage of RseA periplasmic domain by DegS, triggering a proteolytic cascade that frees sigma-E to activate gene expression. RseB binding to RseA prevents activated DegS from cleaving RseA. Sigma-E-mediated envelope stress response is the major pathway to ensure homeostasis in the envelope compartment of the cell. tmpzr1t_l9r_go_relaxed.owl RseA-RseB-RpoE complex|Sigma-E factor negative regulation complex This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2015-02-04T15:38:37Z True cellular_component owl:Class GO:0075333 biolink:NamedThing obsolete positive regulation by host of symbiont adenylate cyclase-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0015477 biolink:NamedThing obsolete receptor porin activity OBSOLETE. A porin of the bacterial outer membrane that forms transmembrane pores and transports relatively large molecules from the external milieu to the periplasm in an energized process. Energizing of transport across the outer membrane requires a heterotrimeric complex of proteins, the TonB-ExbB-ExbD complex, or in some cases, the TolA-TolQ-TolR complex. Energizing requires proton motive force across the cytoplasmic membrane. tmpzr1t_l9r_go_relaxed.owl receptor porin activity This term was made obsolete because it combines two functions that are not linked. True molecular_function owl:Class GO:0009354 biolink:NamedThing obsolete dihydrolipoamide S-succinyltransferase complex OBSOLETE. An enzyme complex that catalyzes the transfer of succinyl-CoA to dihydrolipoamide to form S-succinyldihydrolipoamide. The enzyme is a component of the multienzyme 2-oxoglutarate dehydrogenase complex. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide S-succinyltransferase complex This term was made obsolete because dihydrolipoamide S-succinyltransferase itself is not a complex, it is a component of the 2-oxoglutarate dehydrogenase complex, the activity dihydrolipoamide S-succinyltransferase is contained in a single polypeptide. GO:0045252 True cellular_component owl:Class GO:0052512 biolink:NamedThing obsolete positive regulation by organism of hormone or growth regulator levels in symbiont OBSOLETE. The increase by an organism of the levels of hormones or growth regulators in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive modulation of hormone or growth regulator levels in symbiont|positive regulation by organism of hormone or growth regulator levels in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0040006 biolink:NamedThing obsolete protein-based cuticle attachment to epithelium OBSOLETE. Attaching of a protein-based cuticle to the epithelium underlying it. tmpzr1t_l9r_go_relaxed.owl cuticular attachment to epithelium|protein-based cuticle attachment to epithelium This term was made obsolete because 'protein-based cuticle' is an unnecessary grouping term. GO:0040004|GO:0040005 True biological_process owl:Class GO:0038070 biolink:NamedThing obsolete MAP kinase kinase kinase activity involved in cell wall organization or biogenesis OBSOLETE. Catalysis of the phosphorylation and activation of a MAP kinase kinase (MAPKK), as part of a MAPK signaling cascade that contributes to cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl MAPKKK activity involved in cell wall integrity|MAP kinase kinase kinase activity involved in cell wall biogenesis|MAP3K activity involved in cell wall integrity This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-25T03:43:46Z True molecular_function owl:Class GO:0007550 biolink:NamedThing obsolete establishment of dosage compensation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl establishment of dosage compensation This term was made obsolete because it was undefined and because there is no common mechanism of establishment of dosage compensation in different organisms. GO:0007549 True biological_process owl:Class GO:0008369 biolink:NamedThing obsolete molecular function OBSOLETE. These are terms that have been removed from the active function ontology. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is unnecessary in the OBO flat file format. True molecular_function owl:Class GO:2000579 biolink:NamedThing obsolete positive regulation of microtubule motor activity, minus-end-directed OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATP-dependent microtubule motor activity, minus-end-directed. tmpzr1t_l9r_go_relaxed.owl positive regulation of kinesin ATP phosphohydrolase (minus-end-directed)|positive regulation of minus-end-directed microtubule motor activity|positive regulation of ATP-dependent microtubule motor activity, minus-end-directed|positive regulation of minus-end-directed kinesin ATPase activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140660 bf 2011-04-05T08:38:01Z True biological_process owl:Class GO:0000039 biolink:NamedThing obsolete plasma membrane long-chain fatty acid transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl plasma membrane long-chain fatty acid transporter This term was made obsolete because it describes a gene product and it contains component information. GO:0005886|GO:0005324 True molecular_function owl:Class GO:0017072 biolink:NamedThing obsolete tubulin-specific chaperone activity OBSOLETE. Assists in the correct, non-covalent assembly of tubulin-containing structures in vivo, but is not a component of the assembled structures when performing its normal biological function. tmpzr1t_l9r_go_relaxed.owl tubulin-specific chaperone activity This term was made obsolete because it represents a class of gene products and a biological process rather than a molecular function. GO:0007021 True molecular_function owl:Class GO:0001687 biolink:NamedThing obsolete cytoplasmic dynein heavy chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytoplasmic dynein heavy chain GO:0005868 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0002147 biolink:NamedThing obsolete glucocorticoid receptor import into nucleus OBSOLETE. The directed movement of a glucocorticoid receptor into the nucleus. tmpzr1t_l9r_go_relaxed.owl glucocorticoid receptor nuclear translocation The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0042306 hjd 2009-07-09T02:36:09Z True biological_process owl:Class GO:0042291 biolink:NamedThing obsolete Hub1 hydrolase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Hub1 hydrolase activity This term was made obsolete because it cannot be determined what its intended meaning was, because the term name is not found in the literature. GO:0019783 True molecular_function owl:Class GO:0005073 biolink:NamedThing obsolete common-partner SMAD protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl common-partner SMAD protein This term was made obsolete because it names a family of gene products. True molecular_function owl:Class GO:0018089 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990128 biolink:NamedThing obsolete pre-primosome complex involved in replication initiation OBSOLETE. A protein-DNA complex involved in replication initiation at the origin of replication. tmpzr1t_l9r_go_relaxed.owl pre-primosome complex involved in replication initiation This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2013-06-24T10:29:39Z True cellular_component owl:Class GO:0052392 biolink:NamedThing obsolete induction by organism of defense-related symbiont calcium ion flux OBSOLETE. The activation by an organism of a flux of calcium ions that occurs as part of the defense response of a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of defense-related symbiont calcium ion flux|induction by organism of symbiont Ca2+ flux|activation by organism of symbiont Ca2+ flux|activation by organism of symbiont calcium ion flux This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0031368 biolink:NamedThing obsolete Pro-X metallocarboxypeptidase activity OBSOLETE. Catalysis of the cleavage of a Pro-Xaa bond by a metallopeptidase mechanism to release a C-terminal amino acid. tmpzr1t_l9r_go_relaxed.owl carboxypeptidase P activity|membrane Pro-X carboxypeptidase activity|microsomal carboxypeptidase activity|membrane Pro-Xaa carboxypeptidase|Pro-X metallocarboxypeptidase activity EC:3.4.17.16 This term was made obsolete because it represents a gene product. GO:0008233|GO:0004181 True molecular_function owl:Class RO:0002348 biolink:NamedThing results in commitment to tmpzr1t_l9r_go_relaxed.owl RO:0002348 external results_in_commitment_to GO:1905195 biolink:NamedThing obsolete regulation of ATPase activity, uncoupled OBSOLETE. Any process that modulates the frequency, rate or extent of ATPase activity, uncoupled. tmpzr1t_l9r_go_relaxed.owl regulation of adenylpyrophosphatase activity The reason for obsoletion is that the there is no convincing example of a protein with this function. al 2016-05-12T08:01:20Z True biological_process owl:Class GO:0015480 biolink:NamedThing obsolete secretin (sensu Bacteria) OBSOLETE. Secretins are Gram-negative bacterial outer membrane proteins that form multimeric pores through which macromolecules, usually proteins, can pass. Form homomultimeric ring structures, 10-20 subunits per complex, with large central pores (inner diameters of 5-10 nm). tmpzr1t_l9r_go_relaxed.owl secretin (sensu Bacteria) This term was made obsolete because it represents a class of gene products. GO:0045203|GO:0008320 True molecular_function owl:Class GO:0006339 biolink:NamedThing obsolete positive regulation of transcription of homeotic gene (trithorax group) OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription of homeotic genes of the trithorax group. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription of homeotic gene (trithorax group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0031507|GO:0045944|GO:0045815 True biological_process owl:Class GO:0045012 biolink:NamedThing obsolete MHC class II receptor activity OBSOLETE. A major histocompatibility complex class II receptor. These display processed antigens from virally-infected or transformed cells. Class-II-positive cells ('antigen-presenting cells') can take up antigens from outside by endocytosis, degrade them into small peptides, and re-export the peptides (now bound to MHC class II protein) to the cell surface. These peptide-MHC class II complexes can then be recognized by specific CD4+ lymphocytes. tmpzr1t_l9r_go_relaxed.owl class II major histocompatibility complex antigen|major histocompatibility complex class II receptor|MHC class II receptor activity This term was made obsolete because it was defined ambiguously, and has therefore been used incorrectly in annotations. To update annotations of gene products that act as receptors for MHC class II protein complexes, use the molecular function term 'MHC class II receptor activity ; GO:0032395'; to update annotations of gene products which are components of MHC class II protein complexes, use the cellular component term 'MHC class II protein complex ; GO:0042613'. GO:0042613|GO:0032395 True molecular_function owl:Class GO:0070322 biolink:NamedThing obsolete negative regulation of translation in response to nitrogen starvation OBSOLETE. Any process that stops, prevents or reduces the rate of translation as a result of a stimulus indicating deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl inhibition of translation in response to nitrogen starvation|down-regulation of translation in response to nitrogen starvation|downregulation of translation in response to nitrogen starvation|down regulation of translation in response to nitrogen starvation https://github.com/geneontology/go-ontology/issues/19092 This term was obsoleted because it was redundant with GO:1903574 ; negative regulation of cellular response to amino acid starvation. GO:1903574 True biological_process owl:Class GO:0023039 biolink:NamedThing obsolete signal initiation by physical damage OBSOLETE. The process in which a physical damage signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by physical damage This term was made obsolete because the meaning of the term is ambiguous. GO:0033554|GO:0038023 2010-02-16T09:30:50Z True biological_process owl:Class GO:0039541 biolink:NamedThing obsolete suppression by virus of host RIG-I via RIG-I binding OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of RIG-I (also known as DDX58) by binding to RIG-I itself. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host DDX58:MAVS binding The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-19T02:14:20Z True biological_process owl:Class GO:0075088 biolink:NamedThing obsolete positive regulation by host of symbiont G protein-coupled receptor signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of symbiont G-protein coupled receptor protein signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1901638 biolink:NamedThing obsolete copper ion import into ascospore-type prospore OBSOLETE. Any copper ion import that takes place in ascospore-type prospore. tmpzr1t_l9r_go_relaxed.owl copper ion import into ascospore-type prospore|copper ion uptake in ascospore-type prospore https://sourceforge.net/tracker/index.php?func=detail&aid=3510080&group_id=36855&atid=440764 al 2012-11-15T15:44:04Z True biological_process owl:Class GO:0017142 biolink:NamedThing obsolete toxin susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl toxin susceptibility/resistance GO:0009636 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0005194 biolink:NamedThing obsolete cell adhesion molecule activity OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix. tmpzr1t_l9r_go_relaxed.owl cell adhesion molecule activity This term was made obsolete because it represents gene products involved in the biological process of cell adhesion. GO:0098631|GO:0005515|GO:0007155|GO:0050839|GO:0016021|GO:0030246|GO:0005102 True molecular_function owl:Class GO:0052195 biolink:NamedThing obsolete movement on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of an organism or motile cell on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl movement on or near other organism during symbiotic interaction This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:2000578 biolink:NamedThing obsolete negative regulation of microtubule motor activity, minus-end-directed OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent microtubule motor activity, minus-end-directed. tmpzr1t_l9r_go_relaxed.owl negative regulation of minus-end-directed kinesin ATPase activity|negative regulation of kinesin ATP phosphohydrolase (minus-end-directed)|negative regulation of minus-end-directed microtubule motor activity|negative regulation of ATP-dependent microtubule motor activity, minus-end-directed https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140661 bf 2011-04-05T08:37:57Z True biological_process owl:Class GO:0004235 biolink:NamedThing obsolete matrilysin activity OBSOLETE. Catalysis of the cleavage of Ala14-Leu15 and Tyr16-Leu17 in B chain of insulin. No action on collagen types I, II, IV and V. Cleaves gelatin chain alpha-2(I) > alpha-1(I). tmpzr1t_l9r_go_relaxed.owl matrin activity|PUMP|uterine metalloendopeptidase activity|matrix metalloproteinase pump 1|MMP-7|PUMP-1 proteinase activity|metalloproteinase pump-1|matrilysin activity|PUMP-1 activity|MMP|putative (or punctuated) metalloproteinase-1 activity|MMP 7|putative metalloproteinase activity|matrix metalloproteinase 7 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052464 biolink:NamedThing obsolete modulation by organism of symbiont programmed cell death OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont PCD|modulation of symbiont HR|modulation of symbiont hypersensitive response|modulation by organism of symbiont programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009499 biolink:NamedThing obsolete monocluster bacterial-type ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl monocluster bacterial-type ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0030635 biolink:NamedThing obsolete acetate derivative metabolic process OBSOLETE. The chemical reactions and pathways involving derivatives of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate derivative metabolic process|acetate derivative metabolism This term was made obsolete because it is an unnecessary grouping term, and has been replaced by terms to describe metabolism of specific compounds. GO:1900619 True biological_process owl:Class GO:0005810 biolink:NamedThing obsolete endocytotic transport vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl endocytotic transport vesicle GO:0030139 This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology suggested that a new term was required. True cellular_component owl:Class GO:0015000 biolink:NamedThing obsolete polyferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl polyferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0007081 biolink:NamedThing obsolete mitotic sister-chromatid adhesion release OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mitotic sister-chromatid adhesion release This term was made obsolete because the term name is ambiguous and appears to encompass two processes. GO:0007064|GO:0000070 True biological_process owl:Class GO:1902583 biolink:NamedThing obsolete multi-organism intracellular transport OBSOLETE. An intracellular transport which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism intracellular transport This term was obsoleted because there is no evidence that this process exists. jl 2013-12-18T14:04:58Z True biological_process owl:Class GO:0070688 biolink:NamedThing obsolete MLL5-L complex OBSOLETE. A protein complex that can methylate lysine-4 of histone H3 and plays an essential role in retinoic-acid-induced granulopoiesis. MLL5 is the catalytic methyltransferase subunit, and the complex also contains serine/threonine kinase 38 (STK38), protein phosphatase 1 catalytic subunits, the host cell factor-1 N-terminal subunit, beta-actin, and O-GlcNAc transferase; the human genes encoding the subunits are MLL5, STK38, PPP1CA, PPP1CB, PPP1CC, HCFC1, ACTB and OGT, respectively. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence for the existence of this complex. mah 2009-06-03T11:50:18Z True cellular_component owl:Class GO:0016700 biolink:NamedThing obsolete oxidoreductase activity, acting on hydrogen as donor, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which hydrogen is the electron donor and reduces an acceptor other than a cytochrome, an iron-sulfur protein, NAD, NADP or a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on hydrogen as donor, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016695 True molecular_function owl:Class GO:0030803 biolink:NamedThing obsolete negative regulation of cyclic nucleotide biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl down-regulation of cyclic nucleotide biosynthetic process|down regulation of cyclic nucleotide biosynthetic process|negative regulation of cyclic nucleotide formation|negative regulation of cyclic nucleotide synthesis|negative regulation of cyclic nucleotide anabolism|negative regulation of cyclic nucleotide biosynthesis|inhibition of cyclic nucleotide biosynthetic process|downregulation of cyclic nucleotide biosynthetic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0015443 biolink:NamedThing obsolete sodium-transporting two-sector ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + Na+(in) = ADP + phosphate + Na+(out). tmpzr1t_l9r_go_relaxed.owl sodium-transporting two-sector ATPase activity This term was made obsolete because it refers to a bifunctional gene product. GO:0046932|GO:0046962 True molecular_function owl:Class GO:0005532 biolink:NamedThing obsolete mannose binding lectin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl mannose binding lectin|mannose receptor This term was made obsolete because it refers to a class of gene products. GO:0005537|GO:0007157 True molecular_function owl:Class GO:0001309 biolink:NamedThing obsolete age-dependent telomere shortening OBSOLETE. Progressive reduction in length of the telomeres, the termini of eukaryotic chromosomes, that occurs as part of the cellular aging process. tmpzr1t_l9r_go_relaxed.owl age-dependent telomere shortening This term was made obsolete because it represents a phenotype. GO:1903824 True biological_process owl:Class GO:0050063 biolink:NamedThing obsolete low-density-lipoprotein particle receptor kinase activity OBSOLETE. Catalysis of the reaction: ATP + low-density lipoprotein L-serine = ADP + low-density lipoprotein O-phospho-L-serine. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein receptor kinase activity|STK7|low-density-lipoprotein receptor kinase (phosphorylating) activity|LDL receptor kinase activity|low-density-lipoprotein kinase activity|ATP:low-density-lipoprotein-L-serine O-phosphotransferase activity|ATP:low-density-lipoprotein receptor-L-serine O-phosphotransferase activity|[low-density lipoprotein receptor] kinase activity|low-density-lipoprotein receptor kinase activity MetaCyc:2.7.11.29-RXN|EC:2.7.11.29 This term was made obsolete because it represents a specific gene product. True molecular_function owl:Class GO:0052497 biolink:NamedThing obsolete occlusion by organism of xylem in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism reduces the flow of fluid within the xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves, of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl occlusion by organism of xylem in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0052458 biolink:NamedThing obsolete modulation by organism of symbiont non-apoptotic programmed cell death OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by a non-apoptotic pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont non-apoptotic programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0018998 biolink:NamedThing obsolete metaxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl metaxin This term was made obsolete because it represents a single gene product and not a complex. GO:0005741 True cellular_component owl:Class GO:0008351 biolink:NamedThing obsolete microtubule severing activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl microtubule severing activity This term was made obsolete because it describes a biological process. GO:0051013|GO:0008017 True molecular_function owl:Class GO:0097223 biolink:NamedThing obsolete sperm part OBSOLETE. Any constituent part of a sperm, a mature male germ cell that develops from a spermatid. tmpzr1t_l9r_go_relaxed.owl Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. CL:0000019 pr 2012-01-25T01:19:35Z True cellular_component owl:Class GO:0008751 biolink:NamedThing obsolete NAD(P)H dehydrogenase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl NAD(P)H dehydrogenase This term was made obsolete because it is a redundant grouping term with only one child. GO:0016651 True molecular_function owl:Class GO:0015257 biolink:NamedThing obsolete organic anion channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl organic anion channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0032800 biolink:NamedThing obsolete receptor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl receptor formation|receptor synthesis|receptor biosynthesis|receptor anabolism https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0015063 biolink:NamedThing obsolete long-wave-sensitive opsin OBSOLETE. An opsin with maximal absorption above 500 nm. tmpzr1t_l9r_go_relaxed.owl long-wave-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0007603|GO:0016021|GO:0009881|GO:0016918|GO:0046876 True molecular_function owl:Class GO:0052121 biolink:NamedThing obsolete positive chemotaxis in host environment OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a chemical on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0075163 biolink:NamedThing obsolete positive regulation of G-protein beta subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its G-protein beta subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont G-protein beta subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0052010 biolink:NamedThing obsolete catabolism by symbiont of host cell wall cellulose OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of cellulose in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host cell wall cellulose https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0005708 biolink:NamedThing obsolete mitotic chromosome OBSOLETE. A chromosome involved in the process of mitosis. tmpzr1t_l9r_go_relaxed.owl mitotic chromosome This term was made obsolete because it is based on a process. GO:0000794|GO:0000793 True cellular_component owl:Class GO:0001088 biolink:NamedThing obsolete transcription factor activity, TFIIE-class binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIE class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIIE-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. GO:0001095 krc 2010-10-28T02:25:22Z True molecular_function owl:Class GO:1901637 biolink:NamedThing obsolete positive regulation of maintenance of presynaptic active zone structure OBSOLETE. Any process that activates or increases the frequency, rate or extent of maintenance of presynaptic active zone structure. tmpzr1t_l9r_go_relaxed.owl activation of maintenance of presynaptic active zone structure|upregulation of maintenance of presynaptic active zone structure|up regulation of maintenance of presynaptic active zone structure|up-regulation of maintenance of presynaptic active zone structure|positive regulation of maintenance of presynaptic active zone structure This term was obsoleted at the TermGenie Gatekeeper stage. ans 2012-11-15T14:17:16Z True biological_process owl:Class GO:0008161 biolink:NamedThing obsolete carbamate resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl carbamate resistance GO:0046681 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:1900545 biolink:NamedThing obsolete regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of phenotypic switching. tmpzr1t_l9r_go_relaxed.owl regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. di 2012-05-14T11:28:41Z True biological_process owl:Class GO:0075233 biolink:NamedThing obsolete negative regulation of spore movement on or near host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0009475 biolink:NamedThing obsolete high-molecular-weight cytochrome c (hexadecaheme) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl high-molecular-weight cytochrome c (hexadecaheme) This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0015393 biolink:NamedThing obsolete uracil/uridine permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl uracil/uridine permease activity This term was made obsolete because it represents a multifunctional gene product. GO:0015210|GO:0022857|GO:0015213 True molecular_function owl:Class GO:0075173 biolink:NamedThing obsolete negative regulation of MAP kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont MAP kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont MAP kinase-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0052498 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent induction by organism of symbiont innate immunity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl PAMP dependent activation of symbiont innate immunity|pathogen-associated molecular pattern dependent induction by organism of symbiont innate immunity|MAMP dependent activation of symbiont innate immunity|MAMP dependent induction of symbiont innate immunity|general elicitor-dependent induction of symbiont innate immunity|pathogen-associated molecular pattern dependent activation by organism of symbiont innate immunity|PAMP dependent induction of symbiont innate immunity|general elicitor-dependent activation of symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0006619 biolink:NamedThing obsolete SRP-independent cotranslational protein-membrane targeting OBSOLETE. The targeting of proteins to a membrane that occurs during translation and is independent of SRP and signal recognition. tmpzr1t_l9r_go_relaxed.owl SRP-independent cotranslational membrane targeting|SRP-independent cotranslational protein-membrane targeting|ER translocation This term was made obsolete because there is no evidence for the existence of this process. True biological_process owl:Class GO:1905567 biolink:NamedThing obsolete positive regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport OBSOLETE. Any process that activates or increases the frequency, rate or extent of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of receptor-mediated endocytosis of LDL|activation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|upregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|up-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|up-regulation of receptor-mediated endocytosis of LDL|activation of receptor-mediated endocytosis of LDL|up-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|positive regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|up regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|up regulation of receptor-mediated endocytosis of LDL|upregulation of receptor-mediated endocytosis of LDL|up regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|upregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport|activation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport This term was obsoleted at the TermGenie Gatekeeper stage. nc 2016-10-18T10:58:54Z True biological_process owl:Class GO:0052239 biolink:NamedThing obsolete negative chemotaxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis within other organism during symbiotic interaction|negative chemotaxis in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0034726 biolink:NamedThing obsolete DNA replication-independent nucleosome disassembly OBSOLETE. The controlled disassembly of chromatin outside the context of DNA replication. tmpzr1t_l9r_go_relaxed.owl DNA replication-independent chromatin disassembly https://github.com/geneontology/go-ontology/issues/22133 This term was obsoleted because it did not describe a different process from that described by its parent. True biological_process owl:Class GO:0072692 biolink:NamedThing obsolete chromatin silencing at centromere central core OBSOLETE. Repression of transcription of DNA at the central core of a regional centromere by altering the structure of chromatin. tmpzr1t_l9r_go_relaxed.owl heterochromatic silencing at centromere central core|centromere central core chromatin silencing|chromatin silencing at centromeric central core|chromatin silencing at chromosome kinetochore domain This term was made obsolete because the process does not exist. mah 2011-09-12T03:16:41Z True biological_process owl:Class GO:0000198 biolink:NamedThing obsolete activation of MAPKK activity involved in cell wall organization or biogenesis OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl activation of MAPKK activity involved in cell wall integrity|activation of MAPKK activity involved in cell wall biogenesis|cell wall biogenesis, activation of MAPKK activity|activation of MAP kinase kinase activity during cell wall biogenesis|cell wall biogenesis, activation of MAP kinase kinase activity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0030831 biolink:NamedThing obsolete positive regulation of cGMP catabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cGMP. tmpzr1t_l9r_go_relaxed.owl upregulation of cGMP catabolic process|activation of cGMP catabolic process|positive regulation of cGMP breakdown|stimulation of cGMP catabolic process|positive regulation of cGMP degradation|up regulation of cGMP catabolic process|positive regulation of cGMP catabolism|up-regulation of cGMP catabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0034419 biolink:NamedThing obsolete L-2-hydroxyglutarate oxidase activity OBSOLETE. Catalysis of the reaction: L-2-hydroxyglutarate + O2 = 2-oxoglutarate + hydrogen peroxide. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21950 This term was obsoleted because this activity is not believed to exist. GO:0140696 True molecular_function owl:Class GO:0005070 biolink:NamedThing obsolete SH3/SH2 adaptor activity OBSOLETE. Interacting selectively and non-covalently and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68). tmpzr1t_l9r_go_relaxed.owl SH3/SH2 adaptor protein activity This term was obsoleted because molecular adaptors should be represented by the type of molecules they serve to adapt, and not by their domains. True molecular_function owl:Class RO:0002332 biolink:NamedThing regulates levels of tmpzr1t_l9r_go_relaxed.owl RO:0002332 external regulates_levels_of GO:0100061 biolink:NamedThing obsolete negative regulation of SREBP signaling pathway by transcription factor catabolic process OBSOLETE. Any transcription factor catabolic process process that negatively regulates SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term should be represented by a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class RO:0000053 biolink:NamedThing bearer of tmpzr1t_l9r_go_relaxed.owl RO:0000053 external bearer_of GO:0016944 biolink:NamedThing obsolete RNA polymerase II transcription elongation factor activity OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription elongation factor activity|Pol II transcription elongation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006368 True molecular_function owl:Class GO:0052215 biolink:NamedThing obsolete energy taxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism in the environment of a second organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl energy taxis in environment of other organism during symbiotic interaction|energy taxis in response to environment of other organism This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0015259 biolink:NamedThing obsolete glutamate channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl glutamate channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0043848 biolink:NamedThing obsolete excinuclease cho activity OBSOLETE. Catalysis of the incision of damaged DNA on the 3' side of a lesion, typically at the ninth phosphodiester bond 3' of the damage. tmpzr1t_l9r_go_relaxed.owl uvrc homolog protein|cho|endonuclease cho This term was obsoleted because it represented a gene product. True molecular_function owl:Class GO:0015449 biolink:NamedThing obsolete type IV protein (DNA-protein) secretor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl type IV protein (DNA-protein) secretor activity This term was made obsolete because it does not accurately reflect the function of the proteins involved. True molecular_function owl:Class GO:0044135 biolink:NamedThing obsolete growth of symbiont on or near host phyllosphere OBSOLETE. The increase in size or mass of symbiont occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18786 jl 2009-08-04T04:11:23Z True biological_process owl:Class GO:1905863 biolink:NamedThing obsolete invadopodium organization OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an invadopodium. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-01-25T22:54:14Z True biological_process owl:Class GO:0005016 biolink:NamedThing obsolete neurotrophin TRKC receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKC receptor activity This term was made obsolete because it represents a gene product. GO:0007165|GO:0043121|GO:0004714 True molecular_function owl:Class GO:0090147 biolink:NamedThing obsolete regulation of establishment of mitochondrion localization involved in mitochondrial fission OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of mitochondria to the correct region of the cell that contributes to the process of mitochondrial fission. tmpzr1t_l9r_go_relaxed.owl regulation of mitochondrial localization involved in mitochondrial fission|regulation of establishment of mitochondrion localisation involved in mitochondrial fission https://github.com/geneontology/go-ontology/issues/18417 This term was obsoleted because it represented a phenotype. GO:0000266|GO:0000002 tb 2009-12-08T03:01:01Z True biological_process owl:Class GO:0004247 biolink:NamedThing obsolete saccharolysin activity OBSOLETE. Catalysis of the cleavage of Pro-Phe and Ala-Ala bonds. tmpzr1t_l9r_go_relaxed.owl saccharomyces cerevisiae proteinase yscD|oligopeptidase yscD activity|yeast cysteine proteinase D activity|proteinase yscD activity|saccharolysin activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030400 biolink:NamedThing obsolete protease substrate recruitment factor activity OBSOLETE. A recruiting factor or adaptor molecule associated with the proteasome that activates degradation of specific proteasomal substrates and links them to the degradation machinery; it is not involved in ubiquitination; does not possess proteolytic activity. tmpzr1t_l9r_go_relaxed.owl protease substrate recruitment factor activity This term was made obsolete because it represents a gene product. GO:0030674 True molecular_function owl:Class GO:0007245 biolink:NamedThing obsolete activation of MAPKKK (mating sensu Saccharomyces) OBSOLETE. Upregulation of MAPKKK activity in the context of transduction of mating pheromone signal, as described for Saccharomyces. tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK (mating sensu Saccharomyces) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0000219 biolink:NamedThing obsolete vacuolar hydrogen-transporting ATPase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl V-ATPase|vacuolar hydrogen-transporting ATPase This term was made obsolete because more specific terms were created. GO:0016469 True cellular_component owl:Class GO:0030458 biolink:NamedThing obsolete activation of MAPKKK (mating sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0075081 biolink:NamedThing obsolete modulation by host of symbiont transmembrane receptor-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0052351 biolink:NamedThing obsolete induction by organism of systemic acquired resistance in symbiont OBSOLETE. Any process in which an organism activates systemic acquired resistance in the symbiont organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of systemic acquired resistance in symbiont|induction by organism of systemic acquired resistance in symbiont|induction by organism of SAR in symbiont|activation by organism of SAR in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1902878 biolink:NamedThing obsolete regulation of BMP signaling pathway involved in spinal cord association neuron specification OBSOLETE. Any process that modulates the frequency, rate or extent of BMP signaling pathway involved in spinal cord association neuron specification. tmpzr1t_l9r_go_relaxed.owl regulation of BMP signalling pathway involved in spinal cord association neuron specification|regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification The reason for obsoletion is that this term represents a GO-CAM model. mr 2014-04-03T15:25:32Z True biological_process owl:Class GO:0006755 biolink:NamedThing obsolete carbamoyl phosphate-ADP transphosphorylation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl carbamoyl phosphate-ADP transphosphorylation This term was made obsolete because, according to PUMA2, this "pathway" is a single reaction, corresponding to 'carbamate kinase activity ; GO:0008804' (EC:2.7.2.2). True biological_process owl:Class GO:0070215 biolink:NamedThing obsolete MDM2 binding OBSOLETE. Binding to an isoform of the MDM2 protein, a negative regulator of p53. tmpzr1t_l9r_go_relaxed.owl MDM2 binding GO:0097371 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0050991 biolink:NamedThing obsolete enzyme active site formation via O-sulfo-L-threonine OBSOLETE. The transient sulfation of peptidyl-threonine to form O-sulfo-L-threonine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0362 This term was obsoleted because it was created by error: O-sulfo-L-threonine is a post-translational modification, see PMID:14752058. True biological_process owl:Class GO:0052218 biolink:NamedThing obsolete positive energy taxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism on, within or near a second organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive energy taxis in response to environment of other organism|positive energy taxis in environment of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0030406 biolink:NamedThing obsolete matrix metalloproteinase 25 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase 25 activity|MMP-25|MT6-MMP GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052474 biolink:NamedThing obsolete negative regulation by organism of symbiont T-cell mediated immune response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the T-cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont T-cell mediated immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0106200 biolink:NamedThing obsolete translocase activity acting on amio acids and peptides linked to the hydrolysis of a nucleoside triphosphate OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to the hydrolysis of a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.4.2.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:25:56Z True molecular_function owl:Class GO:0004208 biolink:NamedThing obsolete caspase-3 activity OBSOLETE. Catalysis of the cleavage at the terminal bond of the motif: Asp-Xaa-Xaa-Asp-Xaa. Enzymes with this function are members of the peptidase family C14 and they appear to function in the inactivation of proteins involved in cellular repair and homeostasis during the effector stage of apoptosis. tmpzr1t_l9r_go_relaxed.owl caspase-3 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005908 biolink:NamedThing obsolete HA2 clathrin adaptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl HA2 clathrin adaptor|AP2 This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology was erroneous. GO:0030122 True cellular_component owl:Class GO:0001615 biolink:NamedThing obsolete thyrotropin releasing hormone and secretagogue-like receptors activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl thyrotropin releasing hormone and secretagogue-like receptors activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0034339 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor OBSOLETE. Any process in which a ligand-bound hormone receptor acts in the nucleus to modulate the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor This term was made obsolete because it is unclear whether the term represents the action of the receptor or the entire process of transcription regulation. The term 'nuclear hormone receptor' is also misleading since many of these receptors reside in the cytoplasm until they are bound by a ligand. GO:0006357|GO:0030374|GO:0030522|GO:0004879 True biological_process owl:Class GO:0001689 biolink:NamedThing obsolete cytoplasmic dynein intermediate light chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytoplasmic dynein intermediate light chain GO:0005868 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:1901643 biolink:NamedThing obsolete regulation of tRNA methylation in response to nitrogen starvation OBSOLETE. Any process that modulates the frequency, rate or extent of tRNA methylation in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl al 2012-11-16T14:44:08Z True biological_process owl:Class GO:0006128 biolink:NamedThing obsolete oxidized glutathione reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl oxidized glutathione reduction This term was made obsolete because the term string represents a molecular function and not a biological pathway. GO:0004362|GO:0022900|GO:0006749 True biological_process owl:Class GO:1990842 biolink:NamedThing obsolete response to prenatal stress OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis in the embryo or fetus during pregnancy. tmpzr1t_l9r_go_relaxed.owl response to PNS This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-08-31T15:15:29Z True biological_process owl:Class OIO:hasSynonymType biolink:NamedThing has_synonym_type tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0015289 biolink:NamedThing obsolete pore-forming toxin activity OBSOLETE. Catalysis of the transport of electrolytes and other small molecules across a cell membrane. They are synthesized by one cell and secreted for insertion into the membrane of another cell where they form transmembrane pores. They may exert their toxic effects by allowing the free flow of electrolytes and other small molecules across the membrane, or they may allow entry into the target cell cytoplasm of a toxin protein that ultimately kills the cell. tmpzr1t_l9r_go_relaxed.owl pore-forming toxin activity This term was made obsolete because it represents a class of gene products. GO:0005198|GO:0046930|GO:0046931|GO:0090729 True molecular_function owl:Class GO:0004442 biolink:NamedThing obsolete inositol-1,4,-bisphosphate 3-phosphatase OBSOLETE. Catalysis of the reaction: D-myo-inositol 1,3-bisphosphate + H2O = D-myo-inositol 1-monophosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol-1,4,-bisphosphate 3-phosphatase GO:0004438 True molecular_function owl:Class GO:0001557 biolink:NamedThing obsolete metabolic process resulting in cell growth OBSOLETE. The chemical reactions that occur in living organisms that result in an increase in the mass (size) of a cell. tmpzr1t_l9r_go_relaxed.owl metabolic process resulting in cell growth This term was made obsolete as part of the metabolism rearrangements, because it is redundant with other terms. GO:0008152|GO:0016049 True biological_process owl:Class GO:0045310 biolink:NamedThing obsolete phosphoserine/phosphothreonine binding OBSOLETE. Interacting selectively with a phosphorylated serine or threonine residue within a protein. tmpzr1t_l9r_go_relaxed.owl phosphoserine/phosphothreonine binding This term was made obsolete because it represents two functions. GO:0050816|GO:0050815 True molecular_function owl:Class GO:0010682 biolink:NamedThing obsolete cinnamic acid biosynthetic process involved in flavonoid metabolism OBSOLETE. The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid, which is then utilized in the metabolism of flavonoids. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. True biological_process owl:Class GO:0015521 biolink:NamedThing obsolete bicyclomycin/sulfathiazole:hydrogen antiporter activity OBSOLETE. Catalysis of the reaction: (bicyclomycin or sulfathiazole)(in) + H+(out) = (bicyclomycin or sulfathiazole)(out) + H+(in). tmpzr1t_l9r_go_relaxed.owl bicyclomycin/sulfathiazole:hydrogen antiporter activity|bicyclomycin/sulphathiazole:hydrogen antiporter activity|bicyclomycin/sulfathiazole:proton antiporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015545|GO:0045119|GO:0015546 True molecular_function owl:Class GO:0045857 biolink:NamedThing obsolete negative regulation of molecular function, epigenetic OBSOLETE. Any heritable epigenetic process that stops, prevents, or reduces the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya. tmpzr1t_l9r_go_relaxed.owl down regulation of protein activity, epigenetic|down-regulation of protein activity, epigenetic|inhibition of protein activity, epigenetic|downregulation of protein activity, epigenetic|negative regulation of protein activity, epigenetic https://github.com/geneontology/go-ontology/issues/22203 This term was obsoleted because it is not an active process. True biological_process owl:Class GO:0006324 biolink:NamedThing obsolete S phase-specific histone modification OBSOLETE. The covalent alteration of one or more amino acid residues within a histone protein that takes place during, and results in a modification pattern characteristic of, S phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl S phase-specific histone modification|S-phase-specific histone modification This term was made obsolete because histone modification already exists and the phase specificity is better captured as an annotation extension. GO:0016570 True biological_process owl:Class GO:0035960 biolink:NamedThing obsolete regulation of ergosterol biosynthetic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of ergosterol biosynthetic process by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of ergosterol anabolism by regulation of transcription from RNA polymerase II promoter|regulation of ergosterol formation by regulation of transcription from RNA polymerase II promoter|regulation of ergosterol synthesis by regulation of transcription from Pol II promoter|regulation of ergosterol anabolism by regulation of transcription from Pol II promoter|regulation of ergosterol formation by regulation of transcription from Pol II promoter|regulation of ergosterol biosynthetic process by regulation of transcription from Pol II promoter|regulation of ergosterol biosynthesis by regulation of transcription from RNA polymerase II promoter|regulation of ergosterol biosynthesis by regulation of transcription from Pol II promoter|regulation of ergosterol synthesis by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:1901037 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter during M/G1 transition of mitotic cell cycle OBSOLETE. Any process that regulates transcription such that the target genes are transcribed during the M/G1 transition of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol II promoter during M/G1 transition of mitotic cell cycle|global transcription regulation from Pol II promoter during M/G1 transition of mitotic cell cycle|regulation of transcription during M/G1 transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter involved in M/G1 transition of mitotic cell cycle|regulation of gene-specific transcription from RNA polymerase II promoter during M/G1 transition of mitotic cell cycle|regulation of global transcription from Pol II promoter during M/G1 transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter during M/G1 transition of mitotic cell cycle This term was made obsolete because it does not refer to a real biological process. GO:0006357 pr 2012-06-21T10:09:51Z True biological_process owl:Class GO:1904788 biolink:NamedThing obsolete positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter, global|positive regulation of induction of conjugation with cellular fusion by regulation of global transcription from Pol II promoter|positive regulation of induction of conjugation with cellular fusion by regulation of transcription from Pol II promoter|positive regulation of induction of conjugation with cellular fusion by global transcription regulation from Pol II promoter|positive regulation of induction of conjugation with cellular fusion by regulation of gene-specific transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. tb 2015-11-04T21:17:08Z True biological_process owl:Class GO:0000060 biolink:NamedThing obsolete protein import into nucleus, translocation OBSOLETE. A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl protein-nucleus import, translocation|protein import into cell nucleus, translocation|protein translocation during protein import into nucleus|protein transport from cytoplasm to nucleus, translocation|protein translocation during protein transport from cytoplasm to nucleus|protein translocation during protein-nucleus import This term has been obsoleted because it represents a substep of the parent (GO:0006606 protein import into nucleus), has been incorrectly used. True biological_process owl:Class produced_by biolink:NamedThing produced by tmpzr1t_l9r_go_relaxed.owl RO:0003001 external produced_by GO:0030822 biolink:NamedThing obsolete positive regulation of cAMP catabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl positive regulation of cAMP breakdown|up regulation of cAMP catabolic process|positive regulation of 3',5'-cAMP catabolism|activation of cAMP catabolic process|positive regulation of adenosine 3',5'-cyclophosphate catabolism|positive regulation of cyclic AMP catabolic process|positive regulation of cAMP catabolism|stimulation of cAMP catabolic process|positive regulation of 3',5'-cAMP catabolic process|positive regulation of cAMP degradation|positive regulation of adenosine 3',5'-cyclophosphate catabolic process|upregulation of cAMP catabolic process|positive regulation of cyclic AMP catabolism|positive regulation of 3',5' cAMP catabolic process|positive regulation of 3',5' cAMP catabolism|up-regulation of cAMP catabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. GO:0071878 True biological_process owl:Class GO:1905525 biolink:NamedThing obsolete regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter in response to iron that results in regulation of ferrichrome biosynthetic process. tmpzr1t_l9r_go_relaxed.owl regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron|regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron|regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron This term was made obsolete because it was added in error. al 2016-10-04T15:46:03Z True biological_process owl:Class GO:0075024 biolink:NamedThing obsolete phospholipase C-mediated activation of appressorium formation OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont phospholipase C-mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0019089 biolink:NamedThing obsolete transmission of virus OBSOLETE. The transfer of virions in order to create new infection. tmpzr1t_l9r_go_relaxed.owl viral transmission This term was obsoleted because it did not represent a specific process, but represented the life cycle of a virus. True biological_process owl:Class GO:0005792 biolink:NamedThing obsolete microsome OBSOLETE. Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g. tmpzr1t_l9r_go_relaxed.owl microsome|microsomal membrane Wikipedia:Microsome This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0043231 True cellular_component owl:Class GO:0003001 biolink:NamedThing obsolete generation of a signal involved in cell-cell signaling OBSOLETE. The cellular process that creates a physical entity or change in state, i.e. a signal, that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal. tmpzr1t_l9r_go_relaxed.owl formation of a signal|generation of a signal involved in cell-cell signaling|signal generation|generation of a signal involved in cell-cell signalling This term was made obsolete because biosynthesis of a signal occurs before the start of cell-cell signaling. GO:0023061|GO:0010496|GO:0007267|GO:0031130 True biological_process owl:Class GO:0070323 biolink:NamedThing obsolete positive regulation of translation in response to nitrogen starvation OBSOLETE. Any process that activates or increases the frequency, rate or extent of translation as a result of a stimulus indicating deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl up regulation of translation in response to nitrogen starvation|stimulation of translation in response to nitrogen starvation|up-regulation of translation in response to nitrogen starvation|activation of translation in response to nitrogen starvation|upregulation of translation in response to nitrogen starvation https://github.com/geneontology/go-ontology/issues/19092 This term was obsoleted because it was redundant with GO:1903833 ; positive regulation of cellular response to amino acid starvation. GO:1903833 True biological_process owl:Class GO:0030415 biolink:NamedThing obsolete carboxypeptidase A inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the enzyme carboxypeptidase A. tmpzr1t_l9r_go_relaxed.owl carboxypeptidase A inhibitor activity GO:0030414 This term was made obsolete because it represents a regulator of an obsolete molecular function. True molecular_function owl:Class GO:1904501 biolink:NamedThing obsolete positive regulation of chromatin-mediated maintenance of transcription OBSOLETE. Any process that activates or increases the frequency, rate or extent of chromatin-mediated maintenance of transcription. tmpzr1t_l9r_go_relaxed.owl upregulation of chromatin-mediated maintenance of transcription|activation of chromatin-mediated maintenance of transcription|up regulation of chromatin-mediated maintenance of transcription|up-regulation of chromatin-mediated maintenance of transcription This term was obsoleted because it represents a readout. nc 2015-07-24T09:31:20Z True biological_process owl:Class GO:0031263 biolink:NamedThing obsolete ATPase-coupled amine transporter activity OBSOLETE. Catalysis of the reaction: ATP + H2O + amine(out) = ADP + phosphate + amine(in). tmpzr1t_l9r_go_relaxed.owl amine-transporting ATPase activity|amine ABC transporter|ATP-dependent amine transporter activity https://github.com/geneontology/go-ontology/issues/17164 This term was obsoleted because it corresponds to a wide range of substrates not necessarily transported by the same transporter. See https://en.wikipedia.org/wiki/Amine. True molecular_function owl:Class RO:0002215 biolink:NamedThing capable of tmpzr1t_l9r_go_relaxed.owl RO:0002215 external capable_of GO:0046262 biolink:NamedThing obsolete nitrotoluene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of nitrotoluene, any methylbenzene molecule with NO2 group(s) attached. tmpzr1t_l9r_go_relaxed.owl nitrotoluene biosynthetic process|nitrotoluene biosynthesis|nitrotoluene formation|nitrotoluene synthesis|nitrotoluene anabolism GO:0019326 This term was made obsolete because nitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0046023 biolink:NamedThing obsolete regulation of transcription from RNA polymerase III promoter during mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase III promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic regulation of transcription from Pol III promoter|regulation of transcription from Pol III promoter, mitotic|regulation of transcription from RNA polymerase III promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0006359|GO:0044772 True biological_process owl:Class GO:0044041 biolink:NamedThing obsolete multi-organism carbohydrate catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, involving more than one organism. tmpzr1t_l9r_go_relaxed.owl multi-organism carbohydrate breakdown|multi-organism carbohydrate catabolism|multi-organism carbohydrate degradation https://github.com/geneontology/go-ontology/issues/19769 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0005077 biolink:NamedThing obsolete MAP-kinase anchoring activity OBSOLETE. Binds to MAP kinase and anchors it to a particular subcellular location. tmpzr1t_l9r_go_relaxed.owl MAP-kinase anchor protein activity|MAP-kinase anchoring activity This term was made obsolete because it represents a combination of process and function information. GO:0051019|GO:0008104 True molecular_function owl:Class GO:0052396 biolink:NamedThing obsolete induction by organism of symbiont non-apoptotic programmed cell death OBSOLETE. Any process by which an organism activates programmed cell death in the symbiont, where programmed cell death proceeds by a non-apoptotic pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of symbiont non-apoptotic programmed cell death|activation by organism of symbiont non-apoptotic programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005037 biolink:NamedThing obsolete death receptor adaptor protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl death receptor adaptor protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005515|GO:0005123 True molecular_function owl:Class GO:0100015 biolink:NamedThing obsolete positive regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0051113 biolink:NamedThing obsolete enzyme active site formation via 1'-(phospho-5'-adenosine)-L-histidine OBSOLETE. The transient adenylylation of peptidyl-histidine to form 1'-(phospho-5'-adenosine)-L-histidine (otherwise known as tau-AMP-histidine, tele-AMP-histidine). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0371 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:15182206. True biological_process owl:Class GO:0052358 biolink:NamedThing obsolete catabolism by host of symbiont glucan OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of glucan molecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0016173 biolink:NamedThing obsolete ice nucleation inhibitor activity OBSOLETE. Inhibits the formation of ice crystals. tmpzr1t_l9r_go_relaxed.owl ice nucleation inhibitor activity This term was made obsolete because it refers to a biological process. GO:0042309|GO:0050826|GO:0050825 True molecular_function owl:Class GO:0046757 biolink:NamedThing obsolete lytic virus budding from ER membrane OBSOLETE. A form of viral release in which the nucleocapsid evaginates from the host endoplasmic reticulum membrane system, resulting in envelopment of the virus and cell lysis. tmpzr1t_l9r_go_relaxed.owl lytic viral budding from ER membrane|lytic ER membrane viral budding|lytic virus budding from ER membrane|lytic endoplasmic reticulum membrane viral budding This term was made obsolete because it does not appear to correspond to a real biological process. True biological_process owl:Class GO:0007256 biolink:NamedThing obsolete activation of JNKK activity OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase kinase (JNKK) activity. JNKKs are involved in a signaling pathway that is primarily activated by cytokines and exposure to environmental stress. tmpzr1t_l9r_go_relaxed.owl activation of JUN kinase kinase activity|positive regulation of JUNKK activity https://github.com/geneontology/go-ontology/issues/21307 This term was obsoleted because it represents a molecular function. GO:0046328|GO:0043539 True biological_process owl:Class GO:0036129 biolink:NamedThing obsolete negative regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrogen peroxide (H2O2) stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0000122 bf 2012-03-02T10:36:39Z True biological_process owl:Class GO:0051637 biolink:NamedThing obsolete Gram-positive bacterial cell surface binding OBSOLETE. Binding to a component on the surface of a Gram-positive bacterium. tmpzr1t_l9r_go_relaxed.owl Gram-positive bacterium binding|binding to Gram-positive bacterium|Gram-positive bacterium cell surface binding|Gram-positive bacterial cell surface binding|Gram-positive bacterial binding This term was made obsolete because it is an unnecessary grouping term and was causing confusion. GO:0003823|GO:0050830 True GO:0051076 molecular_function owl:Class GO:0033261 biolink:NamedThing obsolete regulation of S phase OBSOLETE. A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of S-phase|regulation of progression through S phase|regulation of S phase MetaCyc:PWY-5043|MetaCyc:SALVPURINE2-PWY|MetaCyc:SALVADEHYPOX-PWY This term was made obsolete because cell cycle phases are intervals and so cannot be regulated as such, rather it is the transitions between the phases that are regulated. This term was often also used to annotate genes which should have been annotated to 'regulation of DNA replication', or one of its children. GO:0044770 True biological_process owl:Class GO:0008224 biolink:NamedThing obsolete Gram-positive antibacterial peptide activity OBSOLETE. Inhibits the growth of, or directly kills, Gram-positive bacterial cells. tmpzr1t_l9r_go_relaxed.owl Gram-positive antibacterial peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0050830 True molecular_function owl:Class GO:1904499 biolink:NamedThing obsolete regulation of chromatin-mediated maintenance of transcription OBSOLETE. Any process that modulates the frequency, rate or extent of chromatin-mediated maintenance of transcription. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a readout. nc 2015-07-24T09:31:08Z True biological_process owl:Class GO:0018704 biolink:NamedThing obsolete 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity OBSOLETE. Catalysis of the reaction: 5-chloro-2-hydroxymuconic semialdehyde + H+ + 2 e- = Cl- + 2-hydroxymuconic semialdehyde. tmpzr1t_l9r_go_relaxed.owl 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. True molecular_function owl:Class GO:2000576 biolink:NamedThing obsolete positive regulation of microtubule motor activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of microtubule motor activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of kinesin|positive regulation of axonemal motor activity|positive regulation of dynein|positive regulation of kinetochore motor activity|positive regulation of dynein ATPase activity|positive regulation of kinesin motor activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140660 bf 2011-04-05T08:36:51Z True biological_process owl:Class GO:0051804 biolink:NamedThing obsolete positive regulation of cytolysis in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism activates or increases the frequency, rate or extent of cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytolysis of cells in other organism during symbiotic interaction|up regulation of cytolysis of cells in other organism during symbiotic interaction|stimulation of cytolysis of cells in other organism during symbiotic interaction|positive regulation of cytolysis of cells in other organism involved in symbiotic interaction|up-regulation of cytolysis of cells in other organism during symbiotic interaction|upregulation of cytolysis of cells in other organism during symbiotic interaction|activation of cytolysis of cells in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0035569 biolink:NamedThing obsolete N-terminal peptidyl-proline trimethylation OBSOLETE. The trimethylation of the N-terminal proline of proteins to form the derivative N,N,N-trimethylproline. tmpzr1t_l9r_go_relaxed.owl N-terminal peptidyl-proline trimethylation This term was made obsolete because N-terminal proline residues cannot be trimethylated. bf 2010-08-06T01:55:19Z True biological_process owl:Class GO:0023007 biolink:NamedThing obsolete ligand binding to T cell receptor OBSOLETE. Binding of a diffusible ligand to a T cell receptor as part of a signaling process. tmpzr1t_l9r_go_relaxed.owl ligand binding to T cell receptor This term was made obsolete because it is describing a binding molecular function. GO:0050852|GO:0042101|GO:0042608 2010-02-16T09:30:50Z True biological_process owl:Class GO:0016821 biolink:NamedThing obsolete hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement GO:0016817 This term was made obsolete because it incorporates process information. True molecular_function owl:Class GO:1900388 biolink:NamedThing obsolete regulation of vesicle-mediated transport by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of vesicle-mediated transport. tmpzr1t_l9r_go_relaxed.owl regulation of vesicle-mediated transport by regulation of transcription from RNA polymerase II promoter This term was made obsolete because there is no evidence that vesicle-mediated transport is regulated transcriptionally. mah 2012-04-18T03:52:29Z True biological_process owl:Class GO:0016921 biolink:NamedThing obsolete pyroglutamyl-peptidase II activity OBSOLETE. Catalysis of the release of the N-terminal pyroglutamyl group from pGlu-His-Xaa tripeptides and pGlu-His-Xaa-Gly tetrapeptides. tmpzr1t_l9r_go_relaxed.owl thyrotropin-releasing hormone-degrading peptidase activity|thyrotropin-releasing hormone-degrading pyroglutamate aminopeptidase activity|TRH-degrading ectoenzyme activity|thyrotropin-releasing factor pyroglutamate aminopeptidase activity|TRH-specific aminopeptidase activity|pyroglutamate aminopeptidase II|TRH-DE activity|pyroglutamyl peptidase II|thyrotropin-releasing hormone degrading ectoenzyme activity|thyroliberinase activity|pyroglutamyl aminopeptidase II activity|PAP-II activity|thyroliberin-hydrolyzing pyroglutamate aminopeptidase activity|pyroglutamyl-peptidase II activity EC:3.4.19.6|MetaCyc:3.4.19.6-RXN This term was made obsolete because it represents a gene product. GO:0016920|GO:0008237 True molecular_function owl:Class GO:0042801 biolink:NamedThing obsolete polo kinase kinase activity OBSOLETE. Catalysis of the addition of a phosphate group onto a serine or threonine residue in any member of the polo kinase class of proteins. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it represents a gene product and also refers to a non-existent activity (polo kinase). True molecular_function owl:Class GO:0006905 biolink:NamedThing obsolete vesicle transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vesicle transport This term was made obsolete because the meaning of the term is ambiguous. GO:0016192 True biological_process owl:Class GO:0015601 biolink:NamedThing obsolete cystine/diaminopimelate porter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in). tmpzr1t_l9r_go_relaxed.owl cystine/diaminopimelate porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015426|GO:0015184|GO:0015626 True molecular_function owl:Class GO:1903957 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0039608 biolink:NamedThing obsolete suppression by virus of host translation initiation factor activity by induction of host protein dephosphorylation OBSOLETE. Any process in which a virus prevents or reduces the frequency, rate or extent of activity of a host translation initiation factor by promoting dephosphorylation of a host protein. tmpzr1t_l9r_go_relaxed.owl The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-07-06T10:30:57Z True biological_process owl:Class GO:0030271 biolink:NamedThing obsolete chymase activity OBSOLETE. Catalysis of the preferential cleavage: Phe-Xaa > Tyr-Xaa > Trp-Xaa > Leu-Xaa. tmpzr1t_l9r_go_relaxed.owl skeletal muscle (SK) protease activity|mast cell serine proteinase|SK protease activity|mast cell protease I activity|skin chymotryptic proteinase|skeletal muscle protease|chymase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class RO:0002297 biolink:NamedThing results in formation of tmpzr1t_l9r_go_relaxed.owl RO:0002297 external results_in_formation_of GO:0045897 biolink:NamedThing obsolete positive regulation of transcription during mitotic cell cycle OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl up-regulation of transcription during mitosis|mitotic activation of transcription|upregulation of transcription during mitosis|stimulation of transcription during mitosis|up regulation of transcription during mitosis|activation of transcription during mitosis|positive regulation of transcription, mitotic https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0045944|GO:0044772 True biological_process owl:Class GO:0003141 biolink:NamedThing obsolete transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry OBSOLETE. The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands that contributes to lateral mesoderm left/right asymmetry determination. tmpzr1t_l9r_go_relaxed.owl TGFbeta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|TGF-beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|transforming growth factor beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry|TGFbeta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry|transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry|transforming growth factor beta receptor signaling pathway involved in lateral mesoderm left/right asymmetry determination|TGF-beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry GO:1900164 This term was made obsolete because it describes involvement of the nodal signaling pathway in lateral mesoderm left/right asymmetry. Nodal proteins are members of the TGF-beta superfamily, but are distinct from TGF-beta proteins themselves. TGF-beta proteins are not currently known to regulate left/right asymmetry in the lateral mesoderm. tb 2009-09-22T04:03:22Z True biological_process owl:Class GO:0060868 biolink:NamedThing obsolete regulation of vesicle-mediated transport involved in floral organ abscission by small GTPase mediated signal transduction OBSOLETE. Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that modulates the rate or extent of floral organ abscission. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. dph 2009-08-12T06:52:13Z True biological_process owl:Class GO:0075072 biolink:NamedThing obsolete autophagy of symbiont cells involved in interaction with host OBSOLETE. The process in which symbiont cells digest parts of their own cytoplasm during interaction with its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl autophagy of symbiont cells during interaction with host The reason for obsoletion is that this term did not represent any specific host/symbiont process. True biological_process owl:Class BFO:0000063 biolink:NamedThing precedes tmpzr1t_l9r_go_relaxed.owl BFO:0000063 external precedes GO:0038072 biolink:NamedThing obsolete MAP kinase kinase activity involved in conjugation with cellular fusion OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that contributes to conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl MAPKK activity involved in conjugation with cellular fusion|MAP2K activity involved in conjugation with cellular fusion This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:31:57Z True molecular_function owl:Class GO:0075151 biolink:NamedThing obsolete positive regulation of receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont receptor-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0046198 biolink:NamedThing obsolete cresol biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote. tmpzr1t_l9r_go_relaxed.owl cresol synthesis|cresol formation|cresol anabolism|cresol biosynthesis|cresol biosynthetic process GO:0042212 This term was made obsolete because cresol is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0004276 biolink:NamedThing obsolete furin activity OBSOLETE. Catalysis of the release of mature proteins from their proproteins by cleavage of the terminal bond of Arg-Xaa-Yaa-Arg-Z motifs where Xaa can be any amino acid and Yaa is Arg or Lys. Releases albumin, complement component C3 and von Willebrand factor from their respective precursors. tmpzr1t_l9r_go_relaxed.owl furin activity|PACE|paired basic amino acid cleaving enzyme|paired basic amino acid converting enzyme|serine proteinase PACE|prohormone convertase activity|paired basic amino acid residue cleaving enzyme activity|SPC3|dibasic processing enzyme activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0006340 biolink:NamedThing obsolete negative regulation of transcription of homeotic gene (Polycomb group) OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription of homeotic genes of the Polycomb group. tmpzr1t_l9r_go_relaxed.owl negative regulation of transcription of homeotic gene (Polycomb group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0031507|GO:0000122|GO:0045815 True biological_process owl:Class GO:0030006 biolink:NamedThing obsolete heavy cellular metal ion homeostasis OBSOLETE. Regulation of the levels, transport, and metabolism of ions of a heavy metal, a metal that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. tmpzr1t_l9r_go_relaxed.owl heavy cellular metal ion homeostasis This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0006875 True biological_process owl:Class GO:0007068 biolink:NamedThing obsolete negative regulation of transcription during mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl down regulation of transcription during mitosis|negative regulation of transcription, mitotic|mitotic repression of transcription|downregulation of transcription during mitosis|inhibition of transcription during mitosis|down-regulation of transcription during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0000122|GO:0044772 True biological_process owl:Class GO:0018192 biolink:NamedThing obsolete enzyme active site formation via cysteine modification to L-cysteine persulfide OBSOLETE. The formation of an enzyme active site via modification of peptidyl-cysteine to peptidyl-L-cysteine persulfide. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via L-cysteine persulphide https://github.com/geneontology/go-ontology/issues/15594 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:11592406. GO:0004792 True biological_process owl:Class GO:0005572 biolink:NamedThing obsolete RNA polymerase II transcribed untranslated RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcribed untranslated RNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0009352 biolink:NamedThing obsolete dihydrolipoyl dehydrogenase complex OBSOLETE. Complex that possesses dihydrolipoyl dehydrogenase activity. tmpzr1t_l9r_go_relaxed.owl dihydrolipoamide dehydrogenase complex|dihydrolipoyl dehydrogenase complex This term was made obsolete because the activity dihydrolipoamide dehydrogenase is held by a single protein (Lpd1 in yeast), which is one of the components of three different complexes: 2-oxoglutarate dehydrogenase, pyruvate dehydrogenase, and branch chain amino acid dehydrogenase, so dihydrolipoamide dehydrogenase is not a complex itself. GO:0004148|GO:0045240|GO:0045254 True cellular_component owl:Class GO:0003928 biolink:NamedThing obsolete RAB small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl RAB small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0016192|GO:0016191 True molecular_function owl:Class GO:0007353 biolink:NamedThing obsolete ventral/lateral system OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ventral/lateral system This term was made obsolete because it does not describe a biological process. GO:0009880 True biological_process owl:Class GO:0000116 biolink:NamedThing obsolete regulation of transcription involved in G2-phase of mitotic cell cycle OBSOLETE. Any process that regulates transcription such that the target genes are transcribed as part of the G2 phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl G2-specific transcription in mitotic cell cycle|regulation of transcription involved in G2-phase of mitotic cell cycle|regulation of transcription from RNA polymerase II during G2-phase of mitotic cell cycle This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'. GO:0006357|GO:0000117 True biological_process owl:Class GO:0001598 biolink:NamedThing obsolete chemokine receptor-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chemokine receptor-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0042708 biolink:NamedThing obsolete elastase activity OBSOLETE. Catalysis of the hydrolysis of elastin. tmpzr1t_l9r_go_relaxed.owl elastase activity GO:0004175 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0006153 biolink:NamedThing obsolete purine nucleosidase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl purine nucleosidase reaction GO:0008477 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0098679 biolink:NamedThing obsolete regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of carbohydrate catabloism. tmpzr1t_l9r_go_relaxed.owl regulation of carbohydrate catabolism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dos 2017-01-31T14:46:21Z True biological_process owl:Class GO:0006628 biolink:NamedThing obsolete mitochondrial translocation OBSOLETE. The translocation of proteins across the mitochondrial membrane. In the presence of a translocating chain, the outer membrane import machinery (MOM complex) and the inner membrane import machinery (MIM complex) form translocation contact sites as a part of the membrane preprotein import machinery. tmpzr1t_l9r_go_relaxed.owl mitochondrial translocation This term was made obsolete because its definition was equivalent to that of the biological process term 'mitochondrial matrix protein import ; GO:0030150' while the mitochondrial translocation has a broader meaning; this led to mis-annotation. GO:0006626 True biological_process owl:Class GO:1990022 biolink:NamedThing obsolete RNA polymerase III complex import into nucleus OBSOLETE. The directed movement of an RNA polymerase III complex from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III complex import into nucleus|RNA polymerase III complex localisation to nucleus|DNA-directed RNA polymerase III complex localization to nucleus|DNA-directed RNA polymerase III complex import into nucleus|RNA polymerase III complex localization to nucleus The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 pr 2013-01-15T12:46:26Z True biological_process owl:Class GO:0043746 biolink:NamedThing obsolete N2-acetyl-L-lysine aminotransferase activity OBSOLETE. Catalysis of the reaction: N2-acetyl-L-aminoadipate semialdehyde + L-glutamate = 2-oxoglutarate + N2-acetyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl N-acetyl-lysine aminotransferase activity https://github.com/geneontology/go-ontology/issues/18908 This term was obsoleted because there is no evidence that it exists. True molecular_function owl:Class GO:0005106 biolink:NamedThing obsolete ephrin OBSOLETE. A class of proteins that interact with the ephrin receptors. tmpzr1t_l9r_go_relaxed.owl ephrin This term was made obsolete because it refers to a class of gene products. GO:0046875 True molecular_function owl:Class GO:0005552 biolink:NamedThing obsolete polyubiquitin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl polyubiquitin This term was made obsolete because it represents a gene product and not a molecular function. GO:0000209 True molecular_function owl:Class GO:0031937 biolink:NamedThing obsolete positive regulation of chromatin silencing OBSOLETE. Any process that activates or increases the frequency, rate or extent of chromatin silencing. tmpzr1t_l9r_go_relaxed.owl stimulation of chromatin silencing|up-regulation of chromatin silencing|up regulation of chromatin silencing|activation of chromatin silencing|upregulation of chromatin silencing|positive regulation of heterochromatic silencing https://github.com/geneontology/go-ontology/issues/22060 This term was obsoleted because it was too vague: regulation of chromatin (gene) silencing takes place via upstream signaling pathways. True biological_process owl:Class GO:0030067 biolink:NamedThing obsolete respiratory chain cytochrome b6 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl respiratory chain cytochrome b6 This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0004275 biolink:NamedThing obsolete enteropeptidase activity OBSOLETE. Catalysis of the selective cleavage of Lys6-Ile7 bond in trypsinogen. tmpzr1t_l9r_go_relaxed.owl enteropeptidase activity|enterokinase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:2000688 biolink:NamedThing obsolete positive regulation of rubidium ion transmembrane transporter activity OBSOLETE. Any process that activates or increases the frequency, rate or extent of rubidium ion transmembrane transporter activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of rubidium transmembrane transporter activity|positive regulation of Rb+ transmembrane transporter activity|positive regulation of rubidium cation transmembrane transporter activity This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-11T09:27:33Z True biological_process owl:Class GO:0019765 biolink:NamedThing obsolete low affinity Fc receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl low affinity Fc receptor activity This term was made obsolete because it is undefined and is an unnecessary grouping term. GO:0019769|GO:0019772 True molecular_function owl:Class GO:0097032 biolink:NamedThing obsolete mitochondrial respiratory chain complex II biogenesis OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex II, a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. pr 2011-04-05T02:57:33Z True biological_process owl:Class GO:0009388 biolink:NamedThing obsolete antisense RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl antisense RNA This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0015602 biolink:NamedThing obsolete leucine/isoleucine/valine porter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nonpolar amino acid(out) = ADP + phosphate + nonpolar amino acid(in). tmpzr1t_l9r_go_relaxed.owl leucine/isoleucine/valine porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015425|GO:0015188|GO:0015190|GO:0005304 True molecular_function owl:Class GO:0052387 biolink:NamedThing obsolete induction by organism of symbiont apoptosis OBSOLETE. Any process by which an organism activates programmed cell death in the symbiont, where programmed cell death proceeds by apoptosis. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of symbiont apoptotic programmed cell death|activation by organism of symbiont apoptosis|activation by organism of symbiont apoptotic programmed cell death|induction by organism of symbiont apoptosis This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0032853 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1990129 biolink:NamedThing obsolete pre-primosome complex involved in replication restart OBSOLETE. A protein-DNA complex involved in replication restart after a stalled replication fork has been repaired. tmpzr1t_l9r_go_relaxed.owl pre-primosome complex involved in replication restart This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2013-06-24T10:36:30Z True cellular_component owl:Class GO:0007085 biolink:NamedThing obsolete nuclear membrane vesicle binding to chromatin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nuclear membrane vesicle binding to chromatin This term was made obsolete because it represents a molecular function. GO:0003682 True biological_process owl:Class GO:0038040 biolink:NamedThing obsolete cross-receptor activation within G-protein coupled receptor heterodimer OBSOLETE. Activation of one protomer of a consequence of a G protein-coupled (GPCR) heterodimer by the associated subunit. For example, agonist occupancy in one protomer of a GPCR dimer may activate the associated promoter. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15823 This term was obsoleted because it should be captured as a GO-CAM model. bf 2011-11-02T04:50:22Z True biological_process owl:Class GO:0052364 biolink:NamedThing obsolete catabolism by host of substance in symbiont OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont resulting in the breakdown of substances. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0052475 biolink:NamedThing obsolete negative regulation by organism of symbiont cell-mediated immune response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont cell-mediated immune response|negative regulation by organism of symbiont cell-based immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0007101 biolink:NamedThing obsolete male meiosis centrosome cycle OBSOLETE. Centrosome duplication and separation in the context of a meiotic cell cycle in a male organism. tmpzr1t_l9r_go_relaxed.owl centrosome cycle involved in male meiotic cell cycle false True biological_process owl:Class GO:0072451 biolink:NamedThing obsolete detection of stimulus involved in G2 cell size control checkpoint OBSOLETE. The series of events in which information about cell size is received and converted into a molecular signal, contributing to a G2/M transition size control checkpoint. tmpzr1t_l9r_go_relaxed.owl G2/M transition size control checkpoint sensor process|sensing involved in G2/M transition size control checkpoint|detection of stimulus involved in mitotic cell cycle G2/M transition size control checkpoint|G2/M transition size control checkpoint sensor mechanism|detection of stimulus involved in G2/M transition size control checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T11:14:00Z True biological_process owl:Class GO:0052209 biolink:NamedThing obsolete interaction with other organism via substance secreted by type IV secretion system involved in symbiotic interaction OBSOLETE. An interaction with a second organism mediated by a substance secreted by the first organism by a type IV secretion system, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with other organism via substance secreted by type IV secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0044664 biolink:NamedThing obsolete reversion of cell type to default state involved in phenotypic switching OBSOLETE. The cellular process of the reversion of cells to their original cell type, occurring as part of the process of phenotypic switching. Phenotypic switching begins with changes in cell morphology and altered gene expression patterns and ends when the morphology of a population of cells has reverted back to the default state, accompanied by altered expression patterns. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is ambiguous. jl 2012-08-07T14:35:48Z True biological_process owl:Class GO:0044251 biolink:NamedThing obsolete protein catabolic process by pepsin OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein by pepsin in the stomach. Pepsin is generated from its precursor pepsinogen, which is activated by hydrolchloric acid (gastric acid). tmpzr1t_l9r_go_relaxed.owl protein breakdown by pepsin|protein degradation by pepsin The reason for obsoletion is that this term represents a specific gene product. GO:0030163 True biological_process owl:Class GO:0046233 biolink:NamedThing obsolete 3-hydroxyphenylacetate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate. tmpzr1t_l9r_go_relaxed.owl 3-hydroxyphenylacetate anabolism|3-hydroxyphenylacetate biosynthetic process|3-hydroxyphenylacetate biosynthesis|3-hydroxyphenylacetate formation|3-hydroxyphenylacetate synthesis GO:0019609 This term was made obsolete because 3-hydroxyphenylacetate is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0075231 biolink:NamedThing obsolete modulation of spore movement on or near host OBSOLETE. Any process that modulates the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0042029 biolink:NamedThing obsolete fibrolase activity OBSOLETE. Catalysis of the cleavage of 14-Ala-Leu-15 in insulin B chain and cleavage of 413-Lys-Leu-414 in alpha chain of fibrinogen. tmpzr1t_l9r_go_relaxed.owl Agkistrodon contortrix contortrix venom metalloproteinase activity|fibrinolytic proteinase activity|fibrolase activity|Agkistrodon contortrix contortrix metalloproteinase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990517 biolink:NamedThing obsolete protein localization to photoreceptor outer segment OBSOLETE. A process in which a protein is transported to, or maintained in, a location within a photoreceptor outer segment, which is a portion of a modified sensory cilium. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. krc 2014-10-14T14:01:34Z True biological_process owl:Class GO:1904083 biolink:NamedThing obsolete regulation of epiboly OBSOLETE. Any process that modulates the frequency, rate or extent of epiboly. tmpzr1t_l9r_go_relaxed.owl regulation of epiboly This term was obsoleted at the TermGenie Gatekeeper stage. dos 2015-03-25T10:53:34Z True biological_process owl:Class GO:0052198 biolink:NamedThing obsolete modulation of peptidase activity in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein, in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of protease activity in other organism involved in symbiotic interaction|modulation of protease activity in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1990348 biolink:NamedThing obsolete G/A mismatch specific adenine DNA glycosylase activity OBSOLETE. Catalysis of the removal of adenine misinserted into nascent strand opposite guanine in the template by adenine DNA glycosylase activity. The reaction leaves an apurinic AP site. I also requested same term but for Go/A mismatch. If you think it is better to make one term for mismatched adenine that is fine by me. tmpzr1t_l9r_go_relaxed.owl G/A mismatch specific adenine DNA glycosylase activity This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-03-25T10:55:45Z True molecular_function owl:Class GO:0048191 biolink:NamedThing obsolete peptide stabilization activity OBSOLETE. Strengthening of a bond between peptides. Peptides are compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. tmpzr1t_l9r_go_relaxed.owl peptide stabilization activity GO:0050822 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0019793 biolink:NamedThing obsolete ISG15 carrier activity OBSOLETE. Catalysis of the transfer of ISG15 (interferon-stimulated gene-15) from one side of the membrane to the other. tmpzr1t_l9r_go_relaxed.owl ISG15 carrier activity|interferon-stimulated gene-15 carrier activity This term was made obsolete because it is gene product-specific. True molecular_function owl:Class GO:0097236 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of zinc ions. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0045944|GO:0034224 pr 2012-02-01T09:33:11Z True biological_process owl:Class GO:0016704 biolink:NamedThing obsolete oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous OBSOLETE. A grouping term for oxidoreductases acting on single donors with incorporation of molecular oxygen that cannot be more accurated categorized. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous This term was made obsolete because it was an unnecessary grouping term. GO:0016701 True molecular_function owl:Class GO:0075105 biolink:NamedThing obsolete negative regulation by host of symbiont calcium or calmodulin-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of calcium or calmodulin-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by host of symbiont Ca++ or calmodulin-mediated signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0015507 biolink:NamedThing obsolete hydroxy/aromatic amino acid permease activity OBSOLETE. Permease for hydroxy and aromatic amino acids. tmpzr1t_l9r_go_relaxed.owl hydroxy/aromatic amino acid permease activity This term was made obsolete because it is a redundant grouping term. GO:0015171|GO:0015173 True molecular_function owl:Class GO:0004624 biolink:NamedThing obsolete secreted phospholipase A2 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl secreted phospholipase A2 activity This term was made obsolete because it represents component and function information. GO:0005576|GO:0004623 True molecular_function owl:Class GO:0018327 biolink:NamedThing obsolete enzyme active site formation via 1'-phospho-L-histidine OBSOLETE. The transient phosphorylation of peptidyl-histidine to form 1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine). tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0035 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:11038361. GO:0008257 True biological_process owl:Class GO:0030617 biolink:NamedThing obsolete transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity OBSOLETE. A TGF-beta cytoplasmic mediator that inhibits the signaling function of common-partner and pathway-specific mediators. tmpzr1t_l9r_go_relaxed.owl TGFbeta receptor, inhibitory cytoplasmic mediator activity|TGF-beta receptor, inhibitory cytoplasmic mediator activity|inhibitory SMAD protein https://github.com/geneontology/go-ontology/issues/16202 This term was obsoleted because it represents the same activity as GO:0140416 ; DNA-binding transcription factor inhibitor activity', occurs_in cytosol. GO:0140416 True molecular_function owl:Class GO:0015376 biolink:NamedThing obsolete betaine/GABA:sodium symporter activity OBSOLETE. Catalysis of the reaction: (betaine or gamma-aminobutyric acid)(out) + Na+(out) = (betaine or gamma-aminobutyric acid)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl betaine/GABA:sodium symporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0005332|GO:0015370|GO:0015185|GO:0015199 True molecular_function owl:Class GO:0044189 biolink:NamedThing obsolete host cell microsome OBSOLETE. Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic host cells are homogenized and that sediment on centrifugation at 100000 g. tmpzr1t_l9r_go_relaxed.owl host cell microsome|host cell microsomal membrane This term was obsoleted because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0033648 jl 2009-10-15T04:04:24Z True cellular_component owl:Class GO:0000264 biolink:NamedThing obsolete heterotrimeric G-protein GTPase, beta-subunit OBSOLETE. Subunit of a heterotrimeric G-protein GTPase; associates tightly with the gamma subunit. tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GTPase, beta-subunit This term was made obsolete because it does not represent a molecular function. GO:0003924|GO:0005834 True molecular_function owl:Class GO:0042895 biolink:NamedThing obsolete antibiotic transmembrane transporter activity OBSOLETE. Enables the transfer of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl antibiotic transporter activity https://github.com/geneontology/go-ontology/issues/17082 The reason for obsoletion is that this term has been inconsistently used. Consider annotating to 'GO:0042910 ; xenobiotic transmembrane transporter activity' and the specific solute being transported as an annotation extension. True molecular_function owl:Class GO:0001170 biolink:NamedThing obsolete transcription factor activity, RNA polymerase I enhancer sequence-specific binding OBSOLETE. Binding to a RNA polymerase I (Pol I) enhancer in order to modulate transcription by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I enhancer sequence-specific DNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/15787 This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2011-02-03T04:10:59Z True molecular_function owl:Class GO:0035954 biolink:NamedThing obsolete positive regulation of dipeptide transport by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of dipeptide transport by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of dipeptide transport by activation of transcription from RNA polymerase II promoter|positive regulation of dipeptide transport by stimulation of transcription from RNA polymerase II promoter|positive regulation of dipeptide transport by up regulation of transcription from RNA polymerase II promoter|positive regulation of dipeptide transport by up-regulation of transcription from RNA polymerase II promoter|positive regulation of dipeptide transport by positive regulation of transcription from Pol II promoter|positive regulation of dipeptide transport by upregulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0072468 biolink:NamedThing obsolete signal transduction involved in cell shape checkpoint OBSOLETE. A signal transduction process that contributes to a cell shape checkpoint. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it was ambiguous. mah 2010-12-09T11:45:12Z True biological_process owl:Class GO:0090703 biolink:NamedThing obsolete triplex DNA unwinding OBSOLETE. The process by which a three-stranded D-loop DNA is unwound or 'melted'. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it was created in error. tb 2016-09-20T16:37:15Z True biological_process owl:Class GO:0015001 biolink:NamedThing obsolete high-potential iron-sulfur carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl high-potential iron-sulfur carrier|HiPIP|high-potential iron-sulphur carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0042072 biolink:NamedThing obsolete cell adhesion receptor inhibitor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cell adhesion receptor inhibitor activity This term was made obsolete because it represents a gene product. GO:0005102|GO:0007162 True molecular_function owl:Class GO:0008222 biolink:NamedThing obsolete tumor antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl tumor antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0030439 biolink:NamedThing obsolete activation of MAPK during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPK during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0052444 biolink:NamedThing obsolete modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of symbiont salicylic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|modulation of defense-related symbiont SA-mediated signal transduction pathway by organism This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0006197 biolink:NamedThing obsolete adenylate deaminase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl adenylate deaminase reaction GO:0003876 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:1990835 biolink:NamedThing obsolete insulin-like growth factor production OBSOLETE. The appearance of an insulin-like growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. tmpzr1t_l9r_go_relaxed.owl IGF production This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-08-24T16:30:53Z True biological_process owl:Class GO:1905718 biolink:NamedThing obsolete mitotic spindle astral microtubule end OBSOLETE. Any microtubule end that is part of a mitotic spindle astral microtubule. tmpzr1t_l9r_go_relaxed.owl mitotic spindle astral microtubule tip This term was obsoleted at the TermGenie Gatekeeper stage. vw 2016-11-24T14:30:11Z True cellular_component owl:Class GO:0015025 biolink:NamedThing obsolete GPI-anchored membrane-bound receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPI-anchored membrane-bound receptor GO:0031225 This term was made obsolete because it contains both component and function information. True molecular_function owl:Class GO:0042655 biolink:NamedThing obsolete activation of JNKKK activity OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase kinase kinase (JNKKK) activity. tmpzr1t_l9r_go_relaxed.owl positive regulation of JUNKKK activity|activation of JUN kinase kinase kinase activity https://github.com/geneontology/go-ontology/issues/21307 This term was obsoleted because it represents a molecular function. GO:0007254|GO:0043539 True biological_process owl:Class GO:0023066 biolink:NamedThing obsolete signal transmission via vascular system OBSOLETE. The process in which a signal is conveyed via the vascular system. tmpzr1t_l9r_go_relaxed.owl signal transmission via vascular system This term was made obsolete because the meaning of the term is ambiguous. GO:0023052|GO:0010232 2010-02-16T09:30:50Z True biological_process owl:Class GO:0051196 biolink:NamedThing obsolete regulation of coenzyme metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme. tmpzr1t_l9r_go_relaxed.owl regulation of coenzyme and prosthetic group metabolism|regulation of coenzyme and prosthetic group metabolic process|regulation of coenzyme metabolism 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0015073 biolink:NamedThing obsolete phosphatidylinositol 3-kinase, class I, regulator activity OBSOLETE. Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase, class I, regulator activity GO:0046935 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0000260 biolink:NamedThing obsolete hydrogen-translocating V-type ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O + H(+)(in) = ADP + phosphate + H+(out). Found in vacuoles of eukaryotes and in bacteria. tmpzr1t_l9r_go_relaxed.owl hydrogen-translocating V-type ATPase activity GO:0046961 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0006630 biolink:NamedThing obsolete lipid binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lipid binding This term was made obsolete because it represents a molecular function and not a biological process. GO:0008289 True biological_process owl:Class GO:0055124 biolink:NamedThing obsolete premature neural plate formation OBSOLETE. The formation of the neural plate before the appropriate time. tmpzr1t_l9r_go_relaxed.owl premature neural plate formation True biological_process owl:Class GO:0015634 biolink:NamedThing obsolete lipopolysaccharide exporter activity OBSOLETE. Enables the transfer of lipopolysaccharide from the inside of the cell to the outside of the cell across a membrane. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide. tmpzr1t_l9r_go_relaxed.owl LPS exporter activity https://github.com/geneontology/go-ontology/issues/17202 This term was obsoleted because export is a process, not a function. True molecular_function owl:Class GO:0023070 biolink:NamedThing obsolete signal transmission via air OBSOLETE. The process in which a signal is conveyed via the air. tmpzr1t_l9r_go_relaxed.owl signal transmission via air This term was made obsolete because the meaning of the term is ambiguous. 2010-02-16T09:30:50Z True biological_process owl:Class GO:2001274 biolink:NamedThing obsolete negative regulation of glucose import in response to insulin stimulus OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of glucose import in response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of cellular glucose import in response to insulin stimulus https://github.com/geneontology/go-ontology/issues/15961 vk 2011-12-13T12:29:38Z True biological_process owl:Class GO:0004253 biolink:NamedThing obsolete gamma-renin activity OBSOLETE. Catalysis of the cleavage of the Leu-Leu bond in synthetic tetradecapeptide renin substrate, producing angiotensin I, but not active on natural angiotensinogen. Also hydrolyzes BZ-Arg-para-nitroanilide. tmpzr1t_l9r_go_relaxed.owl gamma-renin activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0001528 biolink:NamedThing obsolete elastin OBSOLETE. A major structural protein of mammalian connective tissues; composed of one third glycine, and also rich in proline, alanine, and valine. Chains are cross-linked together via lysine residues. tmpzr1t_l9r_go_relaxed.owl elastin GO:0030023 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051853 biolink:NamedThing obsolete induction in symbiont of tumor, nodule, or growth OBSOLETE. The process by which an associated organism causes the formation of an abnormal mass of cells in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction in symbiont of tumor, nodule, or growth https://github.com/geneontology/go-ontology/issues/18605 This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0052488 biolink:NamedThing obsolete negative regulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl suppression of general elicitor-induced symbiont innate immunity|suppression of pathogen-associated molecular pattern-induced symbiont innate immunity|negative regulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity|suppression of PAMP induced symbiont innate immunity|suppression of MAMP induced symbiont innate immunity|suppression of MAMP-induced symbiont innate immunity|suppression of general elicitor induced symbiont innate immunity|suppression of PAMP-induced symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052463 biolink:NamedThing obsolete modulation by organism of symbiont phytoalexin production OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of production of phytoalexins as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont phytoalexin production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0000267 biolink:NamedThing obsolete cell fraction OBSOLETE. A generic term for parts of cells prepared by disruptive biochemical techniques. tmpzr1t_l9r_go_relaxed.owl cell fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005575 True cellular_component owl:Class GO:0090420 biolink:NamedThing obsolete naphthalene-containing compound metabolic process OBSOLETE. The chemical reactions and pathways involving naphthalene-containing compounds. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a unnecessary grouping class. tb 2011-12-12T11:32:34Z True biological_process owl:Class GO:0030401 biolink:NamedThing obsolete transcription antiterminator activity OBSOLETE. Functions to prevent the termination of RNA synthesis. Acts as a regulatory device, e.g. in phage lambda, enabling a terminator to be masked from RNA polymerase so that distal genes can be expressed. tmpzr1t_l9r_go_relaxed.owl transcription antiterminator activity|transcriptional antiterminator activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006353|GO:0001073|GO:0001072 True molecular_function owl:Class GO:0075062 biolink:NamedThing obsolete regulation of invasive hypha growth OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont invasive hypha formation within host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont invasive hypha formation within host|regulation of symbiont invasive hypha formation in host https://github.com/geneontology/go-ontology/issues/19013 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0100006 biolink:NamedThing obsolete positive regulation of sulfite transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sulfite transport. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0003901 biolink:NamedThing obsolete DNA-directed RNA polymerase II activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase II activity GO:0003899 This term was made obsolete because it represents the specific complex represented by the cellular component term 'DNA-directed RNA polymerase II, core complex ; GO:0005665'. True molecular_function owl:Class GO:0044137 biolink:NamedThing obsolete growth of symbiont on or near host rhizosphere OBSOLETE. The increase in size or mass of symbiont occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18786 This term was obsoleted because it represents both a process and a location. jl 2009-08-04T04:19:07Z True biological_process owl:Class GO:0043677 biolink:NamedThing obsolete germination pore OBSOLETE. A small pore in the outer wall of a mycelial spore through which the germ tube exits upon germination. It can be apical or eccentric in its location. tmpzr1t_l9r_go_relaxed.owl germ pore Wikipedia:Germ_pore This term was made obsolete because it was poorly named and poorly defined. True cellular_component owl:Class GO:0039559 biolink:NamedThing obsolete suppression by virus of host IRF7 activity by positive regulation of IRF7 catabolic process OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host IRF7 (interferon regulatory factor-7) by promoting the ubiquitin-dependent degradation of IRF7, mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl promotion by virus of proteosome-dependent IRF7 degradation The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-09T04:38:58Z True biological_process owl:Class GO:0042990 biolink:NamedThing obsolete regulation of transcription factor import into nucleus OBSOLETE. Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl regulation of transcription factor transport from cytoplasm to nucleus|regulation of transcription factor import into cell nucleus|regulation of transcription factor-nucleus import The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus. GO:0042306 True biological_process owl:Class GO:0008435 biolink:NamedThing obsolete anticoagulant activity OBSOLETE. Functions to retard or prevent coagulation. Often used in the context of blood or milk coagulation. tmpzr1t_l9r_go_relaxed.owl anticoagulant activity GO:0050819 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0052484 biolink:NamedThing obsolete negative regulation by organism of symbiont ethylene-mediated defense response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the ethylene-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont ethylene-mediated defense response|suppression by organism of symbiont ethylene-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0050425 biolink:NamedThing obsolete carboxypeptidase B activity OBSOLETE. Catalysis of the reaction: H2O + peptidyl-L-lysine (or L-arginine) = L-lysine (or L-arginine) + peptide. Preferential release of a C-terminal lysine or arginine amino acid. tmpzr1t_l9r_go_relaxed.owl protaminase activity|peptidyl-L-lysine [L-arginine]hydrolase activity|tissue carboxypeptidase B|carboxypeptidase B activity|pancreatic carboxypeptidase B GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0009839 biolink:NamedThing obsolete SCF complex substrate recognition subunit OBSOLETE. The portion of the SCF ubiquitin ligase complex that contains sites required for recognition (and recruitment) of the substrate to the complex. tmpzr1t_l9r_go_relaxed.owl SCF complex substrate recognition subunit GO:0019005 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0044040 biolink:NamedThing obsolete multi-organism carbohydrate metabolic process OBSOLETE. The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, that involve more than one organism. tmpzr1t_l9r_go_relaxed.owl main pathways of carbohydrate metabolism|multi-organism carbohydrate metabolism|main pathways of carbohydrate metabolic process This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008337 biolink:NamedThing obsolete selectin OBSOLETE. A class of cell adhesion molecules that bind to carbohydrate via a lectin-like domain; integral membrane glycoproteins. tmpzr1t_l9r_go_relaxed.owl selectin This term was made obsolete because it describes a class of gene products. GO:0030246|GO:0007155|GO:0050839|GO:0016021|GO:0005102 True molecular_function owl:Class GO:0008001 biolink:NamedThing obsolete fibrinogen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl fibrinogen GO:0005577 This term was made obsolete because it does not describe an activity. True molecular_function owl:Class GO:0019987 biolink:NamedThing obsolete negative regulation of anti-apoptosis OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of anti-apoptosis. tmpzr1t_l9r_go_relaxed.owl negative regulation of anti-apoptosis|downregulation of anti-apoptosis|down regulation of anti-apoptosis|down-regulation of anti-apoptosis|inhibition of anti-apoptosis This term was made obsolete because it was ill-defined. True biological_process owl:Class GO:0090412 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in fatty acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process GO:0045944 tb 2011-09-01T03:10:41Z True biological_process owl:Class GO:0003107 biolink:NamedThing obsolete positive regulation of natriuresis by angiotensin OBSOLETE. The process in which angiotensin increases the rate of natriuresis indirectly via diuresis. Natriuresis is the process of renal sodium excretion. tmpzr1t_l9r_go_relaxed.owl positive regulation of natriuresis by angiotensin|angiotensin-mediated positive regulation of natriuresis This term was made obsolete because the term is misleading. True biological_process owl:Class GO:0045566 biolink:NamedThing obsolete positive regulation of TRAIL receptor 1 biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 1. tmpzr1t_l9r_go_relaxed.owl stimulation of TRAIL receptor 1 biosynthetic process|positive regulation of TRAIL receptor 1 anabolism|upregulation of TRAIL receptor 1 biosynthetic process|positive regulation of TRAIL receptor 1 formation|positive regulation of TRAIL receptor 1 biosynthesis|up regulation of TRAIL receptor 1 biosynthetic process|activation of TRAIL receptor 1 biosynthetic process|positive regulation of TRAIL receptor 1 synthesis|up-regulation of TRAIL receptor 1 biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:1990865 biolink:NamedThing obsolete response to intermittent hypoxia OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an episodic stimulus indicating lowered oxygen tension. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-09-25T15:07:32Z True biological_process owl:Class GO:0046021 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter during mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of transcription from Pol II promoter, mitotic|mitotic regulation of transcription from Pol II promoter|regulation of transcription from RNA polymerase II promoter during mitosis https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0044772|GO:0006357 True biological_process owl:Class GO:0052169 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism modulates the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity This term was obsoleted because it has been misused. GO:0002221|GO:0002752|GO:0052034 True biological_process owl:Class GO:0033747 biolink:NamedThing obsolete versatile peroxidase activity OBSOLETE. Catalysis of the reactions: Reactive Black 5 + hydrogen peroxide = oxidized Reactive Black 5 + 2 H2O, and donor + hydrogen peroxide = oxidized donor + 2 H2O. tmpzr1t_l9r_go_relaxed.owl VP|reactive-black-5:hydrogen-peroxide oxidoreductase activity|polyvalent peroxidase activity|versatile peroxidase activity|hybrid peroxidase activity GO:0004601 GO:0052750 True molecular_function owl:Class GO:0005177 biolink:NamedThing obsolete neuroligin OBSOLETE. A class of ligands for neurexins. tmpzr1t_l9r_go_relaxed.owl neuroligin GO:0042043 True molecular_function owl:Class GO:1903155 biolink:NamedThing obsolete glutathione transmembrane transporter activity involved in glutathione import into cell OBSOLETE. Any glutathione transmembrane transporter activity that is involved in glutathione import into cell. tmpzr1t_l9r_go_relaxed.owl glutathione transmembrane transporter activity involved in glutathione uptake|glutathione transmembrane transporter activity involved in glutathione import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:05Z True molecular_function owl:Class GO:0050478 biolink:NamedThing obsolete anthranilate 3-monooxygenase activity OBSOLETE. Catalysis of the reaction: 5,6,7,8-tetrahydrobiopterin + anthranilate + O(2) = 3-hydroxyanthranilate + 7,8-dihydrobiopterin + H(2)O. tmpzr1t_l9r_go_relaxed.owl anthranilate 3-hydroxylase activity|anthranilate,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)|anthranilic acid hydroxylase activity This term is slated for obsoletion; According to RHEA the activity does not exist. True molecular_function owl:Class GO:1990568 biolink:NamedThing obsolete MIS18 complex OBSOLETE. A centromere complex assembly protein that is required for the deposition of CENP-A on the centromere. The Mis18 complex localizes to centromeres just prior to the pre-nucleosomal HJURP/CENP-A/H4 complex and is absolutely required for the CENP-A-specific chaperone, Holliday junction recognition protein (HJURP) to reach the centromeres. Plk1 phosphorylation activates Mis18 complex recruitment to the centromeres during G1. CDK phosphorylation of MISBP1 during G2 and mitosis, prior to the metaphase-to-anaphase transition, negatively regulates complex assembly. tmpzr1t_l9r_go_relaxed.owl MIS18 complex An example of this is MIS18A in human (Q9NYP9) in PMID:25036634 (inferred from physical interaction). bhm 2014-11-27T10:52:20Z True cellular_component owl:Class GO:1901916 biolink:NamedThing obsolete protein kinase activity involved in regulation of protein localization to cell division site involved in cytokinesis OBSOLETE. Any protein kinase activity that is involved in regulation of protein localization to cell division site involved in cytokinesis. tmpzr1t_l9r_go_relaxed.owl protein kinase activity involved in regulation of protein localisation to cell division site involved in cytokinesis|protamine kinase activity involved in regulation of protein localisation to cell division site involved in cytokinesis|protamine kinase activity involved in regulation of protein localization to cell division site involved in cytokinesis https://github.com/geneontology/go-ontology/issues/20226 This term was obsoleted is that this term represents both a function and a process. dph 2013-02-14T15:30:37Z True molecular_function owl:Class GO:0071687 biolink:NamedThing obsolete horsetail nucleus leading edge OBSOLETE. The part of the horsetail nucleus where telomeres cluster under the SPB and that leads horsetail movement. The horsetail nucleus is the elongated nucleus which forms during the rapid oscillatory movement at meiotic prophase; characterized in Schizosaccharomyces pombe. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete at the request of PomBase as the concept can be expressed by annotating to a less granular term and using annotation extensions. mah 2010-02-22T05:04:40Z True cellular_component owl:Class GO:0006987 biolink:NamedThing obsolete activation of signaling protein activity involved in unfolded protein response OBSOLETE. The conversion of a specific protein, possessing protein kinase and endoribonuclease activities, to an active form as a result of signaling via the unfolded protein response. tmpzr1t_l9r_go_relaxed.owl unfolded protein response, activation of signalling protein kinase/endonuclease|unfolded protein response, activation of signaling protein activity|unfolded protein response, activation of signaling protein kinase/endonuclease The reason for obsoletion is that this process represents a single step (molecular function) of the IRE1-mediated unfolded protein response (GO:0036498). GO:0036498 True biological_process owl:Class GO:1990382 biolink:NamedThing obsolete melanosome assembly OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form a melanosome, a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. tmpzr1t_l9r_go_relaxed.owl melanosome biogenesis This term was obsoleted at the TermGenie Gatekeeper stage. bf 2014-05-20T16:06:04Z True biological_process owl:Class GO:0042080 biolink:NamedThing obsolete GPI/GSI anchor biosynthetic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPI/GSI anchor synthesis|GPI/GSI anchor biosynthesis|GPI/GSI anchor anabolism|GPI/GSI anchor formation|GPI/GSI anchor biosynthetic process This term was made obsolete because it is a composite term that represents two individual processes. GO:0042082|GO:0006506 True biological_process owl:Class GO:0003787 biolink:NamedThing obsolete actin depolymerizing activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin depolymerizing activity GO:0030042 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:1990844 biolink:NamedThing obsolete interfibrillar mitochondrion OBSOLETE. A mitochondrion that occurs in between fibrils of striated muscle cells and responds in distinct ways to physiological triggers. tmpzr1t_l9r_go_relaxed.owl IMF mitochondrion|IFM|intermyofibrillar mitochondrion This term was obsoleted because it corresponds to mitochondria of specific cell types and this information should be captured as an extension. sl 2015-08-31T16:26:44Z True cellular_component owl:Class GO:0052511 biolink:NamedThing obsolete positive regulation by organism of symbiont ethylene-mediated defense response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the ethylene-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont ethylene-mediated defense response|activation by organism of symbiont ethylene-mediated defense response|induction by organism of symbiont ethylene-mediated defense response|upregulation by organism of symbiont ethylene-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0015070 biolink:NamedThing obsolete toxin activity OBSOLETE. Acts as to cause injury to other living organisms. tmpzr1t_l9r_go_relaxed.owl toxin activity This term was made obsolete because it represents a classification of molecules and not a molecular function. GO:0090729 True molecular_function owl:Class GO:0006608 biolink:NamedThing obsolete snRNP protein import into nucleus OBSOLETE. The directed movement of a small nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl snRNP protein-nucleus import|snRNP protein import into cell nucleus|snRNP protein transport from cytoplasm to nucleus The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 True biological_process owl:Class GO:0009983 biolink:NamedThing obsolete tyrosine aminopeptidase activity OBSOLETE. Catalysis of the release of N-terminal tyrosine from a peptide. tmpzr1t_l9r_go_relaxed.owl tyrosine aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined. True molecular_function owl:Class GO:0009459 biolink:NamedThing obsolete cytochrome a OBSOLETE. A cytochrome containing heme a. tmpzr1t_l9r_go_relaxed.owl cytochrome a GO:0004129 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0010681 biolink:NamedThing obsolete cinnamic acid biosynthetic process involved in stilbene metabolism OBSOLETE. The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid, which is then utilized in the metabolism of stilbene. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. True biological_process owl:Class GO:1900391 biolink:NamedThing obsolete regulation of cAMP-mediated signaling by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cAMP-mediated signaling. tmpzr1t_l9r_go_relaxed.owl regulation of cAMP-mediated signalling by regulation of transcription from RNA polymerase II promoter https://github.com/geneontology/go-ontology/issues/14279 The reason for obsoletion is that cAMP-mediated signaling is not mediated by transcription from RNA polII promoter. mah 2012-04-18T04:19:39Z True biological_process owl:Class GO:0045307 biolink:NamedThing obsolete activator of the establishment of competence for transformation activity OBSOLETE. Activates the establishment of competence for transformation. tmpzr1t_l9r_go_relaxed.owl activator of the establishment of competence for transformation activity GO:0045809 This term was made obsolete because it does not represent a true function. True molecular_function owl:Class GO:0030438 biolink:NamedThing obsolete MAPKKK cascade during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0001559 biolink:NamedThing obsolete regulation of cell growth by detection of nuclear:cytoplasmic ratio OBSOLETE. Any process in which the size of the nucleus with respect to the cytoplasm modulates the frequency, rate or extent of cell growth, the irreversible increase in size of a cell over time. tmpzr1t_l9r_go_relaxed.owl regulation of cell growth by nuclear:cytoplasmic ratio|regulation of cell growth by sensing of nuclear:cytoplasmic ratio|detection of nuclear:cytoplasmic ratio to regulate cell growth|interpretation of nuclear:cytoplasmic ratio to regulate cell growth This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0018326 biolink:NamedThing obsolete enzyme active site formation via S-acetyl-L-cysteine OBSOLETE. The transient acetylation of peptidyl-cysteine to form S-acetyl-L-cysteine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0056 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:1310545. True biological_process owl:Class GO:0016026 biolink:NamedThing obsolete proteasome endopeptidase core OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl proteasome endopeptidase core This term was made obsolete because it does not represent a molecular function. GO:0004175 True molecular_function owl:Class GO:0045889 biolink:NamedThing obsolete positive regulation of transcription of homeotic gene (Polycomb group) OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription of homeotic genes of the Polycomb group. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription of homeotic gene (Polycomb group) This term was made obsolete because it relates to a specific gene family rather than a process. GO:0045944 True biological_process owl:Class GO:0039605 biolink:NamedThing obsolete TFIIB-class transcription factor binding involved in viral suppression of host transcription initiation from RNA polymerase II promoter OBSOLETE. Selective and non-covalent interaction of a viral protein with a member of the TFIIB-class of host transcription factors, which contributes to the viral-suppression of assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template. tmpzr1t_l9r_go_relaxed.owl The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-07-05T04:16:45Z True molecular_function owl:Class GO:0052711 biolink:NamedThing obsolete ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine OBSOLETE. The pathway resulting in the formation of ergothioneine from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (also known as hercynine or histidine betaine). tmpzr1t_l9r_go_relaxed.owl N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolism to ergothioneine|histidine betaine catabolism to ergothioneine|ergothioneine biosynthesis from histidine betaine|ergothioneine biosynthesis from hercynine|hercynine catabolism to ergothioneine https://github.com/geneontology/go-ontology/issues/11163 KEGG_REACTION:R04878 The reason for obsoletion is that this term does not provide a useful distinction from its parent, GO:0052704 (because that trimethyl-His yada is present in both pathways) 2011-08-05T04:06:16Z True biological_process owl:Class GO:0007590 biolink:NamedThing obsolete fat body metabolic process (sensu Insecta) OBSOLETE. The chemical reactions and pathways involving the fat body. A fat body is a fat-containing cellular structure which serves as an energy reserve. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557). tmpzr1t_l9r_go_relaxed.owl fat body metabolic process (sensu Insecta) This term was made obsolete because it represents metabolism within the fat body not of the fat body. True biological_process owl:Class GO:2000462 biolink:NamedThing obsolete positive regulation of eukaryotic cell surface binding OBSOLETE. Any process that activates or increases the frequency, rate or extent of eukaryotic cell surface binding. tmpzr1t_l9r_go_relaxed.owl positive regulation of eukaryotic cell surface binding This term was made obsolete because the cell surface binding terms are ambiguous grouping terms and were causing confusion. GO:1900122|GO:0031347 yaf 2011-03-04T12:00:49Z True biological_process owl:Class GO:1900467 biolink:NamedThing obsolete regulation of cellular potassium ion homeostasis OBSOLETE. Any process that modulates the frequency, rate or extent of cellular potassium ion homeostasis. tmpzr1t_l9r_go_relaxed.owl regulation of cellular potassium ion homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. dgf 2012-05-01T07:48:07Z True biological_process owl:Class GO:1901311 biolink:NamedThing obsolete regulation of gene expression involved in extracellular matrix organization OBSOLETE. Any process that modulates the frequency, rate or extent of gene expression involved in extracellular matrix organization. tmpzr1t_l9r_go_relaxed.owl regulation of expression of extracellular matrix proteins|regulation of extracellular matrix protein production This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization. GO:0010468 vk 2012-08-22T09:18:13Z True biological_process owl:Class GO:0036523 biolink:NamedThing obsolete induction by symbiont of host cytokine production OBSOLETE. Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of cytokine production by the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl 'induction by symbiont of host cytokine secretion'|positive regulation by symbiont of host cytokine secretion|induction by symbiont of host cytokine secretion https://github.com/geneontology/go-ontology/issues/21743 This term was obsoleted because it does not represent a real process. bf 2016-06-06T14:53:54Z True biological_process owl:Class GO:0016551 biolink:NamedThing obsolete posttranscriptional insertion or deletion editing OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place after transcription. tmpzr1t_l9r_go_relaxed.owl posttranscriptional insertion/deletion editing|posttranscriptional insertion or deletion editing This term was made obsolete because it represents two separate processes (insertion and deletion). GO:0070706|GO:0070705 True biological_process owl:Class GO:0052515 biolink:NamedThing obsolete positive regulation by organism of symbiont innate immunity OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the innate immune response of the symbiont organism; the innate immune response is the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont innate immunity|positive regulation of symbiont innate immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1901486 biolink:NamedThing obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process OBSOLETE. Positive regulation of transcription factor catabolism that results in negative regulation of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of SREBP-mediated signaling pathway by positive regulation of transcription factor catabolic process|negative regulation of SREBP-mediated signalling pathway by positive regulation of transcription factor catabolic process|negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolism|negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation The reason for obsoletion is that this term should be represented by a GO-CAM model. bf 2012-10-09T08:23:26Z True biological_process owl:Class GO:0015303 biolink:NamedThing obsolete galactose, glucose uniporter activity OBSOLETE. Catalysis of the reaction: galactose or glucose(out) = galactose or glucose(in). tmpzr1t_l9r_go_relaxed.owl galactose, glucose uniporter activity This term was made obsolete because it represents two molecular functions. GO:0050782|GO:0015304 True molecular_function owl:Class GO:0038081 biolink:NamedThing obsolete MAP kinase kinase kinase activity involved in osmosensory signaling pathway OBSOLETE. Catalysis of the phosphorylation and activation of a MAP kinase kinase (MAPKK), as part of a MAPK signaling cascade that passes on a signal within an osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl MAPKKK activity involved in osmosensory signaling pathway|MAP kinase kinase kinase activity involved in osmosensory signalling pathway|MAP3K activity involved in osmosensory signaling pathway This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:41:31Z True molecular_function owl:Class GO:0051705 biolink:NamedThing obsolete multi-organism behavior OBSOLETE. Any process in which an organism has a behavioral effect on another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl behavioral interaction with other organism|behavioural interaction between organisms|behavioral interaction between organisms|behavioural interaction with other organism|behavioral signalling|behavioral signaling https://github.com/geneontology/go-ontology/issues/18810 This term was obsoleted because it was an unnecessary grouping term. True biological_process owl:Class GO:0017052 biolink:NamedThing obsolete insulin-like growth factor binding protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl insulin-like growth factor binding protein This term was made obsolete because it represents a single gene product and not a complex. GO:0016942 True cellular_component owl:Class GO:0007471 biolink:NamedThing obsolete prothoracic morphogenesis OBSOLETE. The process by which the anatomical structures of the first or anterior segment of the insect thorax are generated and organized. tmpzr1t_l9r_go_relaxed.owl prothoracic morphogenesis This term was made obsolete because it does not stipulate which anatomical part is involved in the process. GO:0007470 True biological_process owl:Class GO:0110087 biolink:NamedThing obsolete suppression by virus of host protease activator activity OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protease activator activity. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22163 This term was obsoleted because it represents a molecular function. kmv 2018-02-12T20:17:29Z True biological_process owl:Class GO:0052395 biolink:NamedThing obsolete induction by organism of defense-related symbiont nitric oxide production OBSOLETE. The activation by an organism of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of defense-related symbiont nitric acid production|induction by organism of defense-related symbiont NO production|activation by organism of defense-related symbiont NO production|induction by organism of defense-related symbiont nitric oxide production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052203 biolink:NamedThing obsolete modulation of catalytic activity in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in enzyme activity in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of enzyme activity within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0051439 biolink:NamedThing obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of ubiquitin ligase activity that contributes to the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl mitotic APC regulator|regulation of ubiquitin-protein ligase activity during mitotic cell cycle|regulation of ubiquitin ligase activity during mitotic cell cycle|mitotic anaphase-promoting complex regulator|mitotic ubiquitin-protein ligase regulator|mitotic SCF complex regulator|mitotic ubiquitin ligase regulator false True biological_process owl:Class GO:0001323 biolink:NamedThing obsolete age-dependent general metabolic decline involved in chronological cell aging OBSOLETE. A process of general metabolic decline that arises in non-dividing cells as they age, and alters cellular metabolism to cause a decline in cell function. tmpzr1t_l9r_go_relaxed.owl age-dependent general metabolic decline during chronological cell ageing|age-dependent general metabolic decline during chronological cell aging https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0044838|GO:0090398 True biological_process owl:Class GO:0016186 biolink:NamedThing obsolete synaptic vesicle fission OBSOLETE. Separation of a synaptic vesicle from the presynaptic membrane. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle fission This term was made obsolete because it was wrongly defined. GO:0016192 True biological_process owl:Class GO:0039659 biolink:NamedThing obsolete suppression by virus of host TBK1-IKBKE-DDX3 complex activity OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of the host TBK1-IKBKE-DDX3 complex. tmpzr1t_l9r_go_relaxed.owl inhibition of host TBK1-IKBKE-DDX3 complex by virus|suppression by virus of host TBK1-IKKE-DDX3 complex activity VZ:719 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. See also: suppression by virus of host TBK1 activity; GO:0039723, and suppression by virus of host IKBKE activity; GO:0039724. bf 2013-07-15T15:10:39Z True biological_process owl:Class GO:0052339 biolink:NamedThing obsolete disruption by organism of cell wall of other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl disassembly by organism of cell wall of other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:1990982 biolink:NamedThing obsolete Immune memory response OBSOLETE. The immune response against a previously encountered antigen being quicker and quantitatively better compared with the primary response. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sp 2016-09-01T10:57:56Z True biological_process owl:Class GO:0075107 biolink:NamedThing obsolete positive regulation by symbiont of host adenylate cyclase activity OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity|positive regulation by symbiont of host adenylyl cyclase activity|positive regulation by symbiont of host 3',5'-cyclic AMP synthetase activity|positive regulation by symbiont of host adenylylcyclase activity|positive regulation by symbiont of host adenyl cyclase activity This term was obsoleted because it represents a molecular function. This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0030528 biolink:NamedThing obsolete transcription regulator activity OBSOLETE. Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. tmpzr1t_l9r_go_relaxed.owl transcriptional regulator activity|transcription regulator activity GO:0140110 This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. True molecular_function owl:Class GO:0005357 biolink:NamedThing obsolete constitutive glucose:proton symporter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose + H+ = glucose + H+. This activity is constitutive and therefore always present, regardless of demand. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. tmpzr1t_l9r_go_relaxed.owl constitutive hydrogen:glucose symporter activity|constitutive hydrogen:glucose transporter activity|constitutive hydrogen/glucose transporter activity The reason for obsoletion is that the constitutive aspect of the transporter is unlikely to be an aspect of the activity, but instead it probably relates to the expression level of the transporter. True molecular_function owl:Class GO:0010131 biolink:NamedThing obsolete sucrose catabolic process, using invertase or sucrose synthase OBSOLETE. The chemical reactions and pathways resulting in the breakdown of sucrose by the enzymatic action of either invertase or sucrose synthase. tmpzr1t_l9r_go_relaxed.owl sucrose breakdown, using invertase or sucrose synthase|sucrose degradation, using invertase or sucrose synthase|sucrose catabolism, using invertase or sucrose synthase|sucrose catabolic process, using invertase or sucrose synthase MetaCyc:PWY-621|MetaCyc:PWY-3801 This term was made obsolete because it describes two different routes of sucrose catabolism, both of which are represented by molecular functions. GO:0016157|GO:0004564|GO:0005987 True biological_process owl:Class GO:0008931 biolink:NamedThing obsolete murein DD-endopeptidase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl murein DD-endopeptidase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0061597 biolink:NamedThing obsolete cyclic pyranopterin monophosphate synthase activity OBSOLETE. Catalysis of the reaction GTP = cyclic pyranopterin phosphate + diphosphate. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it represents two distinct molecular functions. dph 2014-02-10T13:54:19Z True molecular_function owl:Class GO:0052366 biolink:NamedThing obsolete catabolism by organism of xylan in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of xylan in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0005281 biolink:NamedThing obsolete general amino acid permease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl general amino acid permease activity|general amino acid transporter GO:0015171 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0106194 biolink:NamedThing obsolete translocase activity acting on inorganic cations and their chelates linked to a decarboxylation reaction OBSOLETE. Catalysis of the transocation of inorganic cations and their chelates linked to a decarboxylation reaction. tmpzr1t_l9r_go_relaxed.owl EC:7.2.4.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T16:58:50Z True molecular_function owl:Class GO:1900532 biolink:NamedThing obsolete negative regulation of cell proliferation involved in cellular hyperosmotic response OBSOLETE. Negative regulation of cell proliferation during cellular hyperosmotic response. tmpzr1t_l9r_go_relaxed.owl down regulation of cell proliferation of cellular response to hypertonicity|down regulation of cell proliferation of cellular HOG response|inhibition of cell proliferation of cellular response to hypertonicity|down-regulation of cell proliferation of cellular response to hypertonicity|negative regulation of cell proliferation of cellular HOG response|downregulation of cell proliferation of cellular HOG response|negative regulation of cell proliferation of cellular response to hypertonicity|down regulation of cell proliferation of cellular hypertonic response|negative regulation of cell proliferation of cellular hypertonic response|inhibition of cell proliferation of cellular hypertonic response|negative regulation of cell proliferation involved in cellular hyperosmotic response|down-regulation of cell proliferation of cellular hypertonic response|down-regulation of cell proliferation of cellular HOG response|downregulation of cell proliferation of cellular response to hypertonicity|down regulation of cell proliferation of cellular hyperosmotic response|inhibition of cell proliferation of cellular HOG response|downregulation of cell proliferation of cellular hyperosmotic response|inhibition of cell proliferation of cellular hyperosmotic response|down-regulation of cell proliferation of cellular hyperosmotic response|downregulation of cell proliferation of cellular hypertonic response|negative regulation of cell proliferation of cellular hyperosmotic response This term was obsoleted at the TermGenie Gatekeeper stage. al 2012-05-08T02:42:52Z True biological_process owl:Class GO:0005076 biolink:NamedThing obsolete receptor signaling protein serine/threonine kinase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl receptor signaling protein serine/threonine kinase signaling protein activity|receptor signalling protein serine/threonine kinase signalling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0035556 True molecular_function owl:Class GO:0009006 biolink:NamedThing obsolete siroheme synthase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl siroheme synthase activity|sirohaem synthase activity This term was made obsolete because it represents three different molecular functions. GO:0043115|GO:0051266|GO:0004851|GO:0019354 True molecular_function owl:Class GO:0075077 biolink:NamedThing obsolete negative regulation by host of symbiont adenylate cyclase activity OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function. This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0019830 biolink:NamedThing obsolete cadmium sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cadmium sensitivity/resistance GO:0046686 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0004245 biolink:NamedThing obsolete neprilysin activity OBSOLETE. Catalysis of the preferential cleavage at the amino group of hydrophobic residues in insulin, casein, hemoglobin, and a number of other proteins and polypeptides. tmpzr1t_l9r_go_relaxed.owl common acute lymphoblastic leukemia-associated antigens|kidney-brush-border neutral endopeptidase|neprilysin activity|CALLA (common acute lymphoblastic leukemia-associated) antigens|CALLA antigen|neutral endopeptidase activity|kidney-brush-border neutral peptidase|membrane metalloendopeptidase activity|common acute lymphoblastic leukemia antigen|kidney-brush-border neutral proteinase activity|neutral metallendopeptidase activity|CALLA glycoprotein|CD10|acute lymphoblastic leukemia antigen|CALLA glycoproteins|endopeptidase 24.11|CALLA|endopeptidase-2 activity|enkephalinase activity|neutral endopeptidase 24.11 GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0050749 biolink:NamedThing obsolete apolipoprotein E receptor binding OBSOLETE. Interacting selectively with an apolipoprotein E receptor. tmpzr1t_l9r_go_relaxed.owl apolipoprotein E receptor binding GO:0070326 This term was made obsolete because no known receptor binds apolipoprotein E; instead, receptors bind holo-lipoprotein E (apolipoprotein E + bound lipid). True molecular_function owl:Class GO:0052554 biolink:NamedThing obsolete modulation by organism of symbiont immune response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0015428 biolink:NamedThing obsolete type I protein secretor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl type I protein secretor activity This term was made obsolete because it does not accurately reflect the function of the proteins involved. True molecular_function owl:Class GO:0005561 biolink:NamedThing obsolete nucleic acid OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nucleic acid Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0023009 biolink:NamedThing obsolete initiation of T cell receptor signaling OBSOLETE. The process in which a signal causes activation of T cell receptor signaling. tmpzr1t_l9r_go_relaxed.owl initiation of T cell receptor signalling|initiation of T cell receptor signaling This term was made obsolete because the meaning of the term is ambiguous. GO:0042101|GO:0038023|GO:0048018|GO:0050852 2010-02-16T09:30:50Z True biological_process owl:Class GO:0100058 biolink:NamedThing obsolete positive regulation of phenotypic switching by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phenotypic switching. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052453 biolink:NamedThing obsolete modulation by organism of symbiont intracellular transport OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the directed movement of substances within the cell or cells of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont intracellular transport|modulation of symbiont intracellular trafficking This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0006889 biolink:NamedThing obsolete regulation of calcium in ER OBSOLETE. Any process that modulates the concentration of calcium in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl regulation of calcium in ER This term was made obsolete because the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport'). GO:0006874|GO:0005783 True biological_process owl:Class GO:1905112 biolink:NamedThing obsolete regulation of centromere clustering at the mitotic nuclear envelope OBSOLETE. Any process that modulates the frequency, rate or extent of centromere clustering at the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl regulation of kinetochore clustering at spindle pole body|regulation of centromere clustering at the nuclear periphery|regulation of kinetochore clustering at SPB|regulation of kinetochore clustering at the old mitotic spindle pole body|regulation of kinetochore localization at spindle pole body|regulation of rabl configuration|regulation of centromere-SPB clustering This term was obsoleted because it represented a phenotype. al 2016-04-06T16:25:41Z True biological_process owl:Class GO:1990057 biolink:NamedThing obsolete cell cycle arrest in response to DNA damage stimulus OBSOLETE. The cell cycle regulatory process in which the cell cycle is halted during one of the normal phases (G1, S, G2, M) as a result of DNA damage from environmental insults or errors during metabolism. tmpzr1t_l9r_go_relaxed.owl cell cycle arrest in response to DNA damage stimulus This term was obsoleted at the TermGenie Gatekeeper stage. rph 2013-03-06T13:48:44Z True biological_process owl:Class GO:0035536 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052212 biolink:NamedThing obsolete modification of morphology or physiology of other organism via secreted substance involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a second organism, mediated by a substance secreted by one of the organisms, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of host morphology or physiology via effector molecule|modification of morphology or physiology of other organism via secreted substance during symbiotic interaction|modification of host morphology or physiology via ellicitor This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0015223 biolink:NamedThing obsolete vitamin or cofactor transporter activity OBSOLETE. Enables the directed transport of vitamins or cofactors into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl vitamin or cofactor transporter activity|vitamin/cofactor transporter activity This term was made obsolete because it was replaced by more specific terms. GO:0090482 True molecular_function owl:Class GO:0061424 biolink:NamedThing obsolete positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of peroxisome organization. tmpzr1t_l9r_go_relaxed.owl positive regulation of peroxisome organisation by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dph 2012-02-02T12:50:36Z True biological_process owl:Class GO:0008947 biolink:NamedThing obsolete omptin activity OBSOLETE. Catalysis of the preferential cleavage of Xaa-Yaa in which both Xaa and Yaa are Arg or Lys. tmpzr1t_l9r_go_relaxed.owl omptin activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0075230 biolink:NamedThing obsolete spore movement on or near host OBSOLETE. Any process involved in the directed movement of a motile spore on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0052448 biolink:NamedThing obsolete modulation by organism of ethylene levels in symbiont OBSOLETE. The alteration by an organism of the levels of ethylene in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of ethylene levels in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0097605 biolink:NamedThing obsolete regulation of nuclear envelope permeability OBSOLETE. Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl regulation of nuclear membrane permeability The reason for obsoletion is that the nuclear envelope is quite permeable, so there is no cellular process to regulate it. pr 2014-05-14T15:41:44Z True biological_process owl:Class results_in_morphogenesis_of biolink:NamedThing results in morphogenesis of tmpzr1t_l9r_go_relaxed.owl RO:0002298 external results_in_morphogenesis_of GO:0046264 biolink:NamedThing obsolete thiocyanate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of thiocyanate, any anion or salt of thiocyanic acid. tmpzr1t_l9r_go_relaxed.owl thiocyanate biosynthetic process|thiocyanate synthesis|thiocyanate biosynthesis|thiocyanate anabolism|thiocyanate formation GO:0018969 This term was made obsolete because thiocyanates are not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0000186 biolink:NamedThing obsolete activation of MAPKK activity OBSOLETE. The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). tmpzr1t_l9r_go_relaxed.owl activation of MAP/ERK kinase kinase|positive regulation of MAPKK activity|activation of MAPKK activity during sporulation|activation of MAP kinase kinase activity|activation of MAP2K activity https://github.com/geneontology/go-ontology/issues/21307 This term was obsoleted because it represents a molecular function. GO:0043539|GO:0000165 True biological_process owl:Class GO:0003082 biolink:NamedThing obsolete positive regulation of renal output by angiotensin OBSOLETE. Any process in which angiotensin directly increases the rate of natriuresis and diuresis in the kidney. tmpzr1t_l9r_go_relaxed.owl positive regulation of renal output by angiotensin|angiotensin mediated positive regulation of renal output|angiotensin-mediated positive regulation of renal output This term was made obsolete because the term is misleading. True biological_process owl:Class GO:0033706 biolink:NamedThing obsolete quinate/shikimate dehydrogenase activity OBSOLETE. Catalysis of the reactions: L-quinate + NAD(P)+ = 3-dehydroquinate + NAD(P)H + H+, and shikimate + NAD(P)+ = 3-dehydroshikimate + NAD(P)H + H+. tmpzr1t_l9r_go_relaxed.owl YdiB|L-quinate:NAD(P)+ 3-oxidoreductase activity|quinate/shikimate dehydrogenase activity This term was made obsolete because it represents four reactions, and should be four separate terms. GO:0052733|GO:0004764|GO:0030266|GO:0052734 True molecular_function owl:Class GO:0016527 biolink:NamedThing obsolete brain-specific angiogenesis inhibitor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl brain-specific angiogenesis inhibitor activity This term was made obsolete because it is based on anatomical information, and describes at least one gene product. It has also never been defined. GO:0004930 True molecular_function owl:Class GO:0046800 biolink:NamedThing obsolete enhancement of virulence OBSOLETE. Any process that activates or increases the severity of viral infection and subsequent disease. tmpzr1t_l9r_go_relaxed.owl enhancement of virulence This term was made obsolete because 'virulence' is not a biological process; however, alteration of virulence also does not fit under 'regulation of biological quality ; GO:0065008' because it is a product both of the genotype/phenotype of the infecting organism and the genotype/phenotype of the organism being infected and varies by individual within a species both for the infecting organism and the infected organism. True biological_process owl:Class GO:1902188 biolink:NamedThing obsolete positive regulation of viral release from host cell OBSOLETE. Any process that activates or increases the frequency, rate or extent of viral release from host cell. tmpzr1t_l9r_go_relaxed.owl up regulation of viral shedding|up-regulation of viral exit|upregulation of release of virus from host|positive regulation of viral release|activation of viral release|activation of viral exit|positive regulation of viral exit|up regulation of viral release from host cell|activation of viral shedding|positive regulation of release of virus from host|upregulation of viral release from host cell|activation of release of virus from host|up regulation of release of virus from host|up-regulation of viral release|upregulation of viral shedding|up regulation of viral release|upregulation of viral exit|positive regulation of viral shedding|up regulation of viral exit|activation of viral release from host cell|upregulation of viral release|up-regulation of viral release from host cell|up-regulation of release of virus from host|up-regulation of viral shedding https://github.com/geneontology/go-ontology/issues/22168 GO:0019076 This term was obsoleted because there is no evidence that it is a regulated process. ss 2013-06-04T03:54:14Z True biological_process owl:Class GO:0016816 biolink:NamedThing obsolete hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds OBSOLETE. Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in substances other than amides, amidines and nitriles. tmpzr1t_l9r_go_relaxed.owl hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds This term was made obsolete because it was an unnecessary grouping term. GO:0016810 True molecular_function owl:Class GO:0016356 biolink:NamedThing obsolete organophosphorus susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl organophosphorus susceptibility/resistance GO:0046683 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0017120 biolink:NamedThing obsolete polyphosphatidylinositol phosphatase activity OBSOLETE. Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization. tmpzr1t_l9r_go_relaxed.owl polyphosphoinositide phosphatase activity|polyphosphatidylinositol phosphatase activity This term was made obsolete because it represents a gene product. GO:0004438|GO:0034593|GO:0043812 True molecular_function owl:Class GO:0039578 biolink:NamedThing obsolete suppression by virus of host JAK1 activity via JAK1 binding OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host JAK1 (Janus Kinase 1) activity by interacting directly and selectively with JAK1. For example, the polyoma virus T antigen binds to JAK1 and renders it inactive. tmpzr1t_l9r_go_relaxed.owl The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf True biological_process owl:Class GO:0030105 biolink:NamedThing obsolete anaphylaxis OBSOLETE. Extreme immunological sensitivity of the body or tissues to the reintroduction of an antigen. It is a form of anamnestic reaction and is accompanied by pathological changes in tissues or organs due to the release of pharmacologically active substances. tmpzr1t_l9r_go_relaxed.owl anaphylaxis This term was made obsolete because it represents a an abnormal process that is harmful to the organism. GO:0006955 True biological_process owl:Class GO:0043902 biolink:NamedThing obsolete positive regulation of multi-organism process OBSOLETE. Any process that activates or increases the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is an unnecessary grouping term. True biological_process owl:Class GO:0098504 biolink:NamedThing obsolete DNA 3' dephosphorylation involved in DNA repair OBSOLETE. Any 3' DNA dephosphorylation that is involved in the process of DNA repair. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function, and not a specific coordinated process. dos 2013-09-18T14:52:15Z True biological_process owl:Class GO:0051442 biolink:NamedThing obsolete negative regulation of ubiquitin-protein ligase activity involved in meiotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin ligase activity during the meiotic cell cycle. tmpzr1t_l9r_go_relaxed.owl meiotic anaphase-promoting complex inhibitor|meiotic SCF complex inhibitor|meiotic APC inhibitor|meiotic anaphase promoting complex inhibitor|anaphase promoting complex inhibition during meiotic cell cycle|down regulation of ubiquitin ligase activity during meiotic cell cycle|meiotic APC inhibition|inhibition of ubiquitin ligase activity during meiotic cell cycle|anaphase-promoting complex inhibition during meiotic cell cycle|meiotic anaphase promoting complex inhibition|downregulation of ubiquitin ligase activity during meiotic cell cycle|negative regulation of ubiquitin ligase activity during meiotic cell cycle|meiotic ubiquitin ligase inhibitor|APC inhibition during meiotic cell cycle|down-regulation of ubiquitin ligase activity during meiotic cell cycle|meiotic anaphase-promoting complex inhibition https://github.com/geneontology/go-ontology/issues/15196 This term was obsoleted because it should be captured as a GO-CAM model. True biological_process owl:Class GO:1990870 biolink:NamedThing obsolete protein fibril OBSOLETE. A polymer of proteins that form a fine fiber. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-09-25T17:05:32Z True cellular_component owl:Class GO:0016919 biolink:NamedThing obsolete nardilysin activity OBSOLETE. Catalysis of the hydrolysis of polypeptides, preferably at the first bond of Xaa-Arg-Lys, and less commonly at the first bond of Arg-Arg-Xaa, in which Xaa is not Arg or Lys. tmpzr1t_l9r_go_relaxed.owl NRD convertase activity|nardilysin activity|N-arginine dibasic convertase activity|NRD-convertase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004005 biolink:NamedThing obsolete plasma membrane cation-transporting ATPase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl plasma membrane cation-transporting ATPase This term was made obsolete because it contains both component and function information. GO:0019829|GO:0005886 True molecular_function owl:Class GO:0001026 biolink:NamedThing obsolete TFIIIB-type transcription factor activity OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way, Once recruited to an RNA polymerase III promoter by one or more other transcription factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III recruiting transcription factor activity This term was obsoleted because it represents a gene product. krc 2010-08-23T12:24:31Z True molecular_function owl:Class GO:0072427 biolink:NamedThing obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl intra-S DNA damage checkpoint sensor mechanism|intra-S DNA damage checkpoint sensor process|sensing involved in intra-S DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:30:27Z True biological_process owl:Class GO:0015933 biolink:NamedThing obsolete flavin-containing electron transporter OBSOLETE. An oxidoreductase which contains either flavin-adenine dinucleotide or flavin mononucleotide as a prosthetic group, utilizes either NADH or NADPH and transfers electrons to other electron transfer proteins. tmpzr1t_l9r_go_relaxed.owl flavin-containing electron transporter GO:0009055 This term was made obsolete because it does not describe a molecular function. True molecular_function owl:Class GO:0010538 biolink:NamedThing obsolete Hsp27 protein regulator activity OBSOLETE. Modulates the activity of the Hsp27 molecular chaperone. tmpzr1t_l9r_go_relaxed.owl Hsp27 protein regulator activity GO:0051008 This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp27 protein activity'. GO:0051082|GO:0006457|GO:0051787 True molecular_function owl:Class GO:0015352 biolink:NamedThing obsolete secondary active sterol transmembrane transporter activity OBSOLETE. Enables the transfer of sterol from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. tmpzr1t_l9r_go_relaxed.owl sterol porter activity This term was obsoleted because there is no evidence that this function exists. True molecular_function owl:Class GO:0030180 biolink:NamedThing obsolete solute:solute exchange OBSOLETE. Exchange diffusion of two solutes between the inside and outside of a cell or subcellular compartment, in which movement of one solute down a concentration gradient drives movement of the other solute in the opposite direction. tmpzr1t_l9r_go_relaxed.owl solute:solute exchange This term was made obsolete because it represents a molecular function. GO:0015297|GO:0006810 True biological_process owl:Class GO:0051399 biolink:NamedThing obsolete N-terminal arginine aminopeptidase activity OBSOLETE. Catalysis of the hydrolysis of an arginine residue from the N-terminal of an oligopeptide or polypeptide chain. tmpzr1t_l9r_go_relaxed.owl N-terminal arginine aminopeptidase activity|argininyl aminopeptidase activity|arginine aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1903239 biolink:NamedThing obsolete regulation of positive regulation of the force of heart contraction by chemical signal OBSOLETE. Any process that modulates the frequency, rate or extent of positive regulation of the force of heart contraction by chemical signal. tmpzr1t_l9r_go_relaxed.owl regulation of positive regulation of the force of heart muscle contraction by chemical signal|regulation of positive regulation of the force of heart contraction by chemical signal This term was obsoleted at the TermGenie Gatekeeper stage. rl 2014-07-31T17:00:17Z True biological_process owl:Class GO:1900427 biolink:NamedThing obsolete regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cellular response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl regulation of adaptive response to oxidative stress by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-25T09:11:41Z True biological_process owl:Class GO:0018331 biolink:NamedThing obsolete enzyme active site formation via O-phospho-L-serine OBSOLETE. The transient phosphorylation of peptidyl-serine to form O-phospho-L-serine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0037 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:8061611 and PMID:12923550. True biological_process owl:Class GO:1900007 biolink:NamedThing obsolete regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging OBSOLETE. Any process that modulates the frequency, rate or extent of extrachromosomal rDNA circle accumulation involved in replicative cell aging. tmpzr1t_l9r_go_relaxed.owl regulation of extrachromosomal rDNA circle accumulation during replicative cell aging|regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing|regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. se 2012-01-09T10:44:07Z True biological_process owl:Class RO:0002588 biolink:NamedThing results_in_assembly_of tmpzr1t_l9r_go_relaxed.owl RO:0002588 external results_in_assembly_of GO:0052138 biolink:NamedThing obsolete aerotaxis on or near host OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0023037 biolink:NamedThing obsolete signal initiation by light OBSOLETE. The process in which a light signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by light This term was made obsolete because the meaning of the term is ambiguous. GO:0010161|GO:0010017|GO:0009785|GO:0010018|GO:0009881 2010-02-16T09:30:50Z True biological_process owl:Class GO:0035625 biolink:NamedThing obsolete epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway OBSOLETE. The process in which an epidermal growth factor-activated receptor is activated via signaling events from a consequence of a G protein-coupled . This is an example of cross-talk between the EGF and GPCR signaling pathways. tmpzr1t_l9r_go_relaxed.owl EGFR transactivation upon GPCR stimulation|EGFR transactivation by GPCR|epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signalling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway https://github.com/geneontology/go-ontology/issues/15823 This term was obsoleted because it should be captured as a GO-CAM model. bf 2010-12-08T04:19:12Z True biological_process owl:Class GO:0006343 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006389 biolink:NamedThing obsolete tRNA-Y splicing OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl tRNA-Y splicing This term was made obsolete because it does not represent a process unique to splicing of the tyrosyl (Y) tRNA. GO:0006388 True biological_process owl:Class GO:0075074 biolink:NamedThing obsolete spore autophagy involved in appressorium formation on or near host OBSOLETE. The process in which a symbiont spore digests parts of its own cytoplasm, occurring when the appressorium forms on or near the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl spore autophagy during appressorium formation on or near host|autophagy of spores during appressorium formation on or near host The reason for obsoletion is that this term did not represent any specific host/symbiont process. True biological_process owl:Class GO:0005377 biolink:NamedThing obsolete intracellular copper ion transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl intracellular copper ion transporter|intracellular copper transporter This term was made obsolete because it contains both component and function information. GO:0005622|GO:0005375 True molecular_function owl:Class GO:0035558 biolink:NamedThing obsolete phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling OBSOLETE. The process in which a signal is passed from the insulin receptor to components of the phosphatidylinositol 3-kinase (PI3K) cascade, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. tmpzr1t_l9r_go_relaxed.owl phosphoinositide 3-kinase cascade involved in insulin receptor signalling|phosphoinositide 3-kinase cascade involved in insulin receptor signaling|PI3K cascade involved in signaling from the insulin receptor|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|phosphatidylinositol 3-kinase cascade involved in insulin receptor signalling This term was made obsolete because the syntax of the term is incorrect. GO:0038028 bf 2010-05-14T01:34:38Z True biological_process owl:Class GO:0044118 biolink:NamedThing obsolete development of symbiont in host cell OBSOLETE. The progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20305 This term was obsoleted because it represents both a process and a location. jl 2009-07-30T03:52:00Z True biological_process owl:Class GO:0017139 biolink:NamedThing obsolete arsenate sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl arsenate sensitivity/resistance GO:0046685 This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0000991 biolink:NamedThing obsolete transcription factor activity, core RNA polymerase II binding OBSOLETE. Binding to an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl core RNA polymerase II binding transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0140110|GO:0000993 krc 2010-08-10T05:03:45Z True molecular_function owl:Class GO:0061401 biolink:NamedThing obsolete positive regulation of transcription from RNA polymerase II promoter in response to a hypotonic environment OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0045944|GO:0071476 dph 2012-01-10T09:43:08Z True biological_process owl:Class GO:1902539 biolink:NamedThing obsolete multi-organism macropinocytosis OBSOLETE. A macropinocytosis which involves another organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-02T14:23:06Z True biological_process owl:Class GO:0000197 biolink:NamedThing obsolete activation of MAPKKK activity involved in cell wall organization or biogenesis OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK activity involved in cell wall biogenesis|activation of MAP kinase kinase kinase activity during cell wall biogenesis|cell wall biogenesis, activation of MAP kinase kinase kinase activity|cell wall biogenesis, activation of MAPKKK activity|activation of MAPKKK activity involved in cell wall integrity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. GO:0043539|GO:0000165 True biological_process owl:Class GO:0048503 biolink:NamedThing obsolete GPI anchor binding OBSOLETE. Interacting selectively with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes. tmpzr1t_l9r_go_relaxed.owl GPI anchor binding|glycosylphosphatidylinositol binding This term was made obsolete because it has been widely, and incorrectly, used to annotate proteins that have GPI anchors covalently attached. A new term has been created that can be used to annotate gene products that interact non-covalently with GPI anchors. True molecular_function owl:Class GO:1900530 biolink:NamedThing obsolete regulation of cell shape involved in cellular response to salt stress OBSOLETE. Any regulation of cell shape that is involved in cellular response to salt stress. tmpzr1t_l9r_go_relaxed.owl regulation of cell shape of cellular salinity response|regulation of cell shape of cellular response to salt stress|regulation of cell shape of cellular response to ionic osmotic stress|regulation of cell shape involved in cellular response to salt stress This term was obsoleted at the TermGenie Gatekeeper stage. al 2012-05-08T01:48:01Z True biological_process owl:Class OIO:hasRelatedSynonym biolink:NamedThing has_related_synonym tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0008711 biolink:NamedThing obsolete ADP-L-glycero-D-manno-heptose synthase activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl ADP-L-glycero-D-manno-heptose synthase activity This term was made obsolete because it represents a bifunctional gene product (e.g. E. coli RfaE). GO:0033786|GO:0033785 True molecular_function owl:Class GO:0004200 biolink:NamedThing obsolete signaling (initiator) caspase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl signaling (initiator) caspase activity|signalling (initiator) caspase activity GO:0004197 This term was made obsolete because it includes biological process information. GO:0006915 True molecular_function owl:Class GO:0005322 biolink:NamedThing obsolete low-density lipoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein|LDL GO:0005319 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:1990980 biolink:NamedThing obsolete copper ion transport across blood-CSF barrier OBSOLETE. The directed movement of copper ions passing through the blood-cerebrospinal fluid barrier. tmpzr1t_l9r_go_relaxed.owl copper ion transport across BCB|copper ion transport across blood-cerebrospinal fluid barrier This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-08-17T21:14:18Z True biological_process owl:Class GO:0072436 biolink:NamedThing obsolete detection of stimulus involved in DNA replication checkpoint OBSOLETE. The series of events in which information about whether DNA replication is complete is received and converted into a molecular signal, contributing to a DNA replication checkpoint. tmpzr1t_l9r_go_relaxed.owl DNA replication checkpoint sensor mechanism|sensing involved in DNA replication checkpoint|DNA replication checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:52:09Z True biological_process owl:Class GO:0030227 biolink:NamedThing obsolete apolipoprotein E receptor activity OBSOLETE. Combining with apolipoprotein E to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl ApoE receptor|apolipoprotein E receptor activity GO:0030229 This term was made obsolete because no known receptor binds apolipoprotein E; instead, receptors bind holo-lipoprotein E (apolipoprotein E + bound lipid). True molecular_function owl:Class GO:0046257 biolink:NamedThing obsolete anaerobic 2,4,6-trinitrotoluene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, in the absence of oxygen. tmpzr1t_l9r_go_relaxed.owl anaerobic 2,4,6-trinitrotoluene biosynthetic process|anaerobic 2,4,6-trinitrotoluene biosynthesis|anaerobic 2,4,6-trinitrotoluene formation|anaerobic 2,4,6-trinitrotoluene synthesis|anaerobic 2,4,6-trinitrotoluene anabolism GO:0018975 This term was made obsolete because 2,4,6-trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0015600 biolink:NamedThing obsolete glutamate/aspartate porter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in). tmpzr1t_l9r_go_relaxed.owl glutamate/aspartate porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015183|GO:0005313|GO:0015426 True molecular_function owl:Class GO:0051801 biolink:NamedThing obsolete cytolysis in other organism involved in symbiotic interaction OBSOLETE. The killing by an organism of a cell in a second organism by means of the rupture of cell membranes and the loss of cytoplasm, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl cytolysis of cells in other organism during symbiotic interaction|cytolysis of cells in other organism involved in symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:1902718 biolink:NamedThing obsolete sequestering of copper ion OBSOLETE. Any process that modulates the frequency, rate or extent of sequestering of copper ion. tmpzr1t_l9r_go_relaxed.owl sequestering of copper ion This term was obsoleted at the TermGenie Gatekeeper stage. mr 2014-02-24T16:08:53Z True biological_process owl:Class GO:0052457 biolink:NamedThing obsolete modulation by organism of defense-related symbiont nitric oxide production OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont nitric oxide production|modulation by organism of defense-related symbiont NO production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1902535 biolink:NamedThing obsolete multi-organism membrane invagination OBSOLETE. A membrane invagination which involves another organism. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21459 This term was obsoleted because there is no evidence that this process exists. jl 2013-12-02T13:58:43Z True biological_process owl:Class GO:0035968 biolink:NamedThing obsolete regulation of sterol import by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of sterol import, by regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of sterol import by regulation of transcription from Pol II promoter|regulation of sterol uptake by regulation of transcription from Pol II promoter|regulation of sterol uptake by regulation of transcription from RNA polymerase II promoter|regulation of sterol influx by regulation of transcription from Pol II promoter|regulation of sterol influx by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0009476 biolink:NamedThing obsolete class IV cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class IV cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class RO:0002224 biolink:NamedThing starts with tmpzr1t_l9r_go_relaxed.owl RO:0002224 external starts_with GO:0003078 biolink:NamedThing obsolete regulation of natriuresis OBSOLETE. Any process that modulates the frequency, rate, or extent of natriuresis, the process of renal sodium excretion. tmpzr1t_l9r_go_relaxed.owl regulation of natriuresis This term was made obsolete because its definition was inaccurate. GO:0035813 True biological_process owl:Class GO:0009473 biolink:NamedThing obsolete cytochrome c7 (triheme) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytochrome c7 (triheme) This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0035656 biolink:NamedThing obsolete kinesin-associated melanosomal adaptor activity OBSOLETE. The activity of linking kinesins, cytoplasmic proteins responsible for moving vesicles and organelles towards the distal end of microtubules, to melanosomes. tmpzr1t_l9r_go_relaxed.owl kinesin-melanosome adaptor activity https://github.com/geneontology/go-ontology/issues/17668 This term was obsoleted because it represents the function of a specific protein. GO:0030674|GO:0008093 bf 2011-01-27T01:32:51Z True molecular_function owl:Class GO:0006143 biolink:NamedThing obsolete purine metabolic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl purine metabolic process This term was made obsolete because more appropriate terms were created. GO:0006163|GO:0042278|GO:0006144 True biological_process owl:Class GO:0039568 biolink:NamedThing obsolete suppression by virus of host STAT1 activity by inhibition of DNA binding OBSOLETE. Any process in which a virus stops, prevents, or reduces STAT1-dependent gene transcription, by preventing STAT1 from binding to promoter sites in the nucleus. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host STAT1 activity by negative regulation of DNA binding|inhibition of DNA binding of STAT1 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:31:58Z True biological_process owl:Class GO:0038082 biolink:NamedThing obsolete MAP kinase phosphatase activity involved in regulation of osmosensory signaling pathway OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that passes on a signal within an osmosensory signaling pathway. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase activity involved in regulation of osmosensory signaling pathway|MAP kinase phosphatase activity involved in regulation of osmosensory signalling pathway|Hog1 phosphatase activity This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:41:31Z True molecular_function owl:Class GO:0004196 biolink:NamedThing obsolete saccharopepsin activity OBSOLETE. Catalysis of the degradation of gelatin; little activity on hemoglobin. Specificity on B chain of insulin more restricted than pepsin A; does not cleave Phe1-Val2, Gln4-His5 or Gly23-Phe24. tmpzr1t_l9r_go_relaxed.owl saccharomyces cerevisiae aspartic proteinase A|yeast proteinase A|saccharopepsin activity|proteinase A|PRA|aspartic proteinase yscA|saccharomyces aspartic proteinase activity|yeast endopeptidase A activity|proteinase yscA|Saccharomyces aspartic proteinase activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0072460 biolink:NamedThing obsolete detection of stimulus involved in meiotic recombination checkpoint OBSOLETE. The series of events in which information about whether recombination is complete is received and converted into a molecular signal, contributing to a meiotic recombination checkpoint. tmpzr1t_l9r_go_relaxed.owl sensing involved in meiotic recombination checkpoint|meiotic recombination checkpoint sensor process|meiotic recombination checkpoint sensor mechanism https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T11:36:42Z True biological_process owl:Class GO:0045020 biolink:NamedThing obsolete error-prone DNA repair OBSOLETE. DNA repair pathways that tend to increase the endogenous mutation rate. tmpzr1t_l9r_go_relaxed.owl mutagenic DNA repair|error-prone DNA repair This term was made obsolete because 'error-prone' does not correspond to a repair mechanism, and the term has been superseded by more specific terms. GO:0042276 True biological_process owl:Class GO:0015448 biolink:NamedThing obsolete type III protein (virulence-related) secretor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl type III protein (virulence-related) secretor activity This term was made obsolete because it does not accurately reflect the function of the proteins involved. True molecular_function owl:Class GO:0090203 biolink:NamedThing obsolete transcriptional activation by promoter-terminator looping OBSOLETE. The formation and maintenance of DNA loops that juxtapose the promoter and terminator regions of RNA polymerase II-transcribed genes and activate transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl transcriptional activation by memory gene loops https://github.com/geneontology/go-ontology/issues/20204 This term was obsoleted because it was defined like a molecular function. GO:0045893 tb 2009-12-18T11:58:32Z True biological_process owl:Class GO:0047764 biolink:NamedThing obsolete caldesmon kinase activity OBSOLETE. Catalysis of the reaction: ATP + caldesmon = ADP + caldesmon phosphate. tmpzr1t_l9r_go_relaxed.owl MetaCyc:2.7.11.17-RXN This term was made obsolete because it represents a specific gene product. True molecular_function owl:Class GO:0017021 biolink:NamedThing obsolete myosin phosphatase myosin binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl myosin phosphatase myosin binding This term was made obsolete because it describes the binding of myosin phosphatase to myosin, which is not a molecular function. GO:0017022|GO:0017018 True molecular_function owl:Class GO:0015331 biolink:NamedThing obsolete asparagine/glutamine permease activity OBSOLETE. Catalysis of the stereospecific transfer of asparagine or glutamine across a biological membrane. tmpzr1t_l9r_go_relaxed.owl asparagine/glutamine permease activity This term was made obsolete because it represents a multifunctional gene product. GO:0015186|GO:0015182|GO:0022857 True molecular_function owl:Class GO:0072448 biolink:NamedThing obsolete detection of stimulus involved in G1 cell size control checkpoint OBSOLETE. The series of events in which information about cell size is received and converted into a molecular signal, contributing to a mitotic cell cycle G1/S transition size control checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle G1/S transition size control checkpoint sensor mechanism|detection of stimulus involved in mitotic cell cycle G1/S transition size control checkpoint|sensing involved in mitotic cell cycle G1/S transition size control checkpoint|mitotic cell cycle G1/S transition size control checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T10:56:32Z True biological_process owl:Class GO:0005709 biolink:NamedThing obsolete prophase chromosome OBSOLETE. A chromosome found in the cell during prophase. tmpzr1t_l9r_go_relaxed.owl prophase chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0005694 True cellular_component owl:Class GO:0015500 biolink:NamedThing obsolete threonine/serine:sodium symporter activity OBSOLETE. Catalysis of the reaction: (threonine or serine)(out) + Na+(out) = (threonine or serine)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl threonine/serine:sodium symporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015194|GO:0005283|GO:0015195 True molecular_function owl:Class GO:0052440 biolink:NamedThing obsolete modulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of symbiont ethylene-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0000233 biolink:NamedThing obsolete cytoplasmic interphase chromosome OBSOLETE. A chromosome found in the cytoplasm during interphase. tmpzr1t_l9r_go_relaxed.owl cytoplasmic interphase chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0005694 True cellular_component owl:Class GO:0017164 biolink:NamedThing obsolete nicotinic acetylcholine receptor-associated protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nicotinic acetylcholine receptor-associated protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005515|GO:0005102 True molecular_function owl:Class GO:0045558 biolink:NamedThing obsolete TRAIL receptor 1 biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of TRAIL-R1 (TNF-related apoptosis inducing ligand receptor 1), which engages a caspase-dependent apoptotic pathway. tmpzr1t_l9r_go_relaxed.owl TRAIL receptor 1 anabolism|TRAIL receptor 1 biosynthesis|tumor necrosis factor receptor superfamily member 10A biosynthetic process|TRAIL receptor 1 synthesis|TRAIL receptor 1 formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0034884 biolink:NamedThing obsolete gamma-N-formylaminovinylacetaldehyde dehydrogenase activity OBSOLETE. Catalysis of the reaction: gamma-N-formylaminovinylacetaldehyde + H2O = gamma-N-formylaminovinylacetate + 2 H+ + 2 e-. tmpzr1t_l9r_go_relaxed.owl gamma-N-formylaminovinylacetaldehyde dehydrogenase activity This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. GO:0016903 True molecular_function owl:Class GO:0075174 biolink:NamedThing obsolete regulation of cAMP-mediated signaling in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its cAMP-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of cAMP-mediated signal transduction in response to host|regulation of cAMP-mediated signalling in response to host|regulation of symbiont cAMP-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0030442 biolink:NamedThing obsolete inactivation of MAPK during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0072415 biolink:NamedThing obsolete detection of stimulus involved in spindle checkpoint OBSOLETE. The series of events in which information about the assembly, orientation or integrity of the spindle is received and converted into a molecular signal, contributing to a spindle checkpoint. tmpzr1t_l9r_go_relaxed.owl spindle checkpoint sensor mechanism|spindle checkpoint sensor process|sensing involved in spindle checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T03:54:50Z True biological_process owl:Class GO:0030464 biolink:NamedThing obsolete aging dependent sterility (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl aging dependent sterility (sensu Fungi) This term was made obsolete because it reflected a trait or phenotype. GO:0030466 True biological_process owl:Class GO:0005553 biolink:NamedThing obsolete ubiquitin-ribosomal protein fusion protein OBSOLETE. A protein encoded by some ubiquitin genes which consists of a single copy of ubiquitin fused to a ribosomal protein. tmpzr1t_l9r_go_relaxed.owl ubiquitin-ribosomal protein fusion protein This term was made obsolete because it describes a gene product. True molecular_function owl:Class GO:0039607 biolink:NamedThing obsolete proteolysis by virus of host translation initiation factor OBSOLETE. The chemical reactions and pathways performed by a virus resulting in the hydrolysis of a host translation initiation factor by cleavage of its peptide bonds. tmpzr1t_l9r_go_relaxed.owl proteolytic cleavage by virus of host translation initiation factor|suppression by virus of host translation initiation factor activity by proteolysis|cleavage of host translation initiation factor by viral protease|cleavage of host translation initiation factor by virus The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-07-05T04:46:21Z True biological_process owl:Class GO:0008439 biolink:NamedThing obsolete monophenol monooxygenase activator activity OBSOLETE. Increases the activity of the enzyme monophenol monooxygenase. tmpzr1t_l9r_go_relaxed.owl prophenol oxidase activator|monophenol monooxygenase activator activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0007238 biolink:NamedThing obsolete activation of Pbs2 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of Pbs2 This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:0004284 biolink:NamedThing obsolete acrosin activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Xaa > Lys-Xaa. tmpzr1t_l9r_go_relaxed.owl acrosin activity|acrosin amidase activity|alpha-acrosin|psi-acrosin|acrozonase activity|acrosomal proteinase activity|beta-acrosin|acrosomal protease activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052399 biolink:NamedThing obsolete induction by organism of symbiont programmed cell death OBSOLETE. The activation by an organism of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of symbiont programmed cell death|induction by organism of symbiont programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0075204 biolink:NamedThing obsolete negative regulation of symbiont penetration hypha formation for entry into host OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont penetration hypha formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18779 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0031015 biolink:NamedThing obsolete karyopherin docking complex OBSOLETE. A subcomplex of the nuclear pore complex that interacts with karyopherin-cargo complexes; a well-characterized example in Saccharomyces contains Asm4p, Nup53p, and Nup170p. tmpzr1t_l9r_go_relaxed.owl karyopherin docking complex|Asm4p-containing complex|nuclear pore subcomplex GO:0017056|GO:0044613 True cellular_component owl:Class GO:0052193 biolink:NamedThing obsolete movement in symbiont environment OBSOLETE. The directed movement of an organism or motile cell on, within or near its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl True biological_process owl:Class GO:0042142 biolink:NamedThing obsolete heavy metal chelation OBSOLETE. The strong but reversible binding of a heavy metal ion by a larger molecule such as protein. tmpzr1t_l9r_go_relaxed.owl heavy metal chelation GO:0046911 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0051860 biolink:NamedThing obsolete evasion or tolerance of symbiont defenses OBSOLETE. The process, either active or passive, by which an organism evades or tolerates the effects of the defense(s) or defense molecules of a symbiont organism. Symbiont defenses may be induced by the presence of the organism or may be preformed (e.g. physical barriers). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14862 This term was made obsolete because it is not relevant for the host in a host-symbiont interaction. True biological_process owl:Class GO:0046853 biolink:NamedThing obsolete inositol or phosphatidylinositol phosphorylation OBSOLETE. The process of introducing a phosphate group into inositol or a phosphatidylinositol. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms. tmpzr1t_l9r_go_relaxed.owl inositol and derivative phosphorylation|inositol or phosphatidylinositol phosphorylation|myo-inositol or phosphatidyl-myo-inositol phosphorylation|myo-inositol and derivative phosphorylation This term was made obsolete because it is a grouping term representing two quite different sets of entities, hexose sugars and glycerophospholipids. GO:0046854|GO:0052746 True biological_process owl:Class GO:0016915 biolink:NamedThing obsolete activin OBSOLETE. A nonsteroidal regulator, composed of two covalently linked beta subunits, that is synthesized in the pituitary gland and gonads and stimulates the secretion of follicle-stimulating hormone. tmpzr1t_l9r_go_relaxed.owl activin This term was made obsolete because it represents a gene product. GO:0046881|GO:0005160 True molecular_function owl:Class GO:0006920 biolink:NamedThing obsolete commitment to apoptosis OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl commitment to apoptosis This term was made obsolete because more accurate terms were created. GO:0006915 True biological_process owl:Class GO:0000190 biolink:NamedThing obsolete MAPKKK cascade (pseudohyphal growth) OBSOLETE. MAPKKK cascade involved in transduction of signal promoting pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0075013 biolink:NamedThing obsolete growth or development of symbiont on or near host phyllosphere OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont on or near host phyllosphere True biological_process owl:Class GO:0009869 biolink:NamedThing obsolete incompatible pollen-pistil interaction OBSOLETE. An interaction between a pollen grain and pistil that results in inhibition of pollen germination/growth. tmpzr1t_l9r_go_relaxed.owl incompatible pollen-pistil interaction This term was made obsolete because it represents a phenotype. True biological_process owl:Class GO:0030053 biolink:NamedThing obsolete immunophilin OBSOLETE. Any member of a family of receptors that includes the major FK506 binding protein FKBP and cyclophilin. These two proteins are unrelated in amino-acid sequence, but both possess peptidyl-prolyl isomerase activity which is blocked by immunosuppressants that block signal-transduction pathways leading to T cell activation such as FK506 and rapamycin, which block FKBP, or cyclosporin A, which blocks cyclophilin. tmpzr1t_l9r_go_relaxed.owl immunophilin This term was made obsolete because it does not represent a molecular function. GO:0003755 True molecular_function owl:Class RO:0002231 biolink:NamedThing has start location tmpzr1t_l9r_go_relaxed.owl RO:0002231 external has_start_location GO:0035420 biolink:NamedThing obsolete MAPK cascade involved in innate immune response OBSOLETE. A MAPK cascade that contributes to an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade involved in innate immune response https://github.com/geneontology/go-ontology/issues/14323 This term was obsoleted because it represents a GO-CAM model. bf 2010-03-29T01:25:59Z True biological_process owl:Class GO:0009766 biolink:NamedThing obsolete primary charge separation OBSOLETE. In the photosynthetic reaction centers, primary charge separation is initiated by the excitation of a molecule followed by the transfer of an electron to an electron acceptor molecule following energy transfer from light harvesting complexes. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a mechanism, and is outside the scope of GO. True biological_process owl:Class GO:0090115 biolink:NamedThing obsolete C-5 methylation on cytosine involved in chromatin silencing OBSOLETE. The covalent transfer of a methyl group to C-5 of cytosine in a DNA molecule that contributes to chromatin silencing. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function. tb 2009-12-07T11:55:16Z True biological_process owl:Class RO:0003000 biolink:NamedThing produces tmpzr1t_l9r_go_relaxed.owl RO:0003000 external produces GO:0035415 biolink:NamedThing obsolete regulation of mitotic prometaphase OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic prometaphase This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. bf 2010-03-29T10:52:08Z True biological_process owl:Class GOREL:0001019 biolink:NamedThing results_in_division_of tmpzr1t_l9r_go_relaxed.owl GOREL:0001019 use occurs_in external results_in_division_of GO:0044412 biolink:NamedThing obsolete growth or development of symbiont in host OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont within host|growth or development of symbiont in host|growth or development of organism within host|invasive growth This term was made obsolete because it contained a conjunction (or). GO:0051701|GO:0044114 True biological_process owl:Class GO:0007235 biolink:NamedThing obsolete activation of Ypd1 protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of Ypd1 protein This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:1903245 biolink:NamedThing obsolete regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate OBSOLETE. Any process that modulates the frequency, rate or extent of adrenergic receptor signaling pathway involved in positive regulation of heart rate. tmpzr1t_l9r_go_relaxed.owl regulation of beta adrenergic receptor signaling pathway involved in positive regulation of heart rate|regulation of If activation by beta-adrenergic receptor signaling pathway|regulation of adrenergic receptor signalling pathway involved in positive regulation of heart rate|regulation of activation of funny current by beta-adrenergic receptor signaling pathway|regulation of adenylate cyclase-activating cardiac adrenergic receptor signaling pathway|regulation of Gs-coupled adrenergic receptor signaling pathway involved in positive regulation of heart rate https://github.com/geneontology/go-ontology/issues/14733 This term was obsoleted because it is not precise enough. We must specify if the ACA-activating or ACA inhibiting pathway is the target of the regulation. rl 2014-08-04T11:53:54Z True biological_process owl:Class GO:0075098 biolink:NamedThing obsolete negative regulation by host of symbiont signal transduction mediated by G-protein gamma subunit OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont signal transduction mediated by G-protein gamma subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0051842 biolink:NamedThing obsolete evasion or tolerance of symbiont immune response OBSOLETE. Any process, either active or passive, by which an organism avoids the effects of the symbiont organism's immune response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl immune evasion|evasion or tolerance of symbiont immune response This term was made obsolete because it does not represent a valid biological process that occurs in nature. True biological_process owl:Class GO:0016146 biolink:NamedThing obsolete protein-synthesizing GTPase activity, initiation OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl protein-synthesizing GTPase activity, initiation This term was made obsolete because it contains both process and function information. GO:0003924|GO:0006413|GO:0006412|GO:0003743 True molecular_function owl:Class GO:0010149 biolink:NamedThing obsolete senescence OBSOLETE. A preprogrammed process associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components. An example of this process is found in Arabidopsis thaliana, when older leaves or floral organs are shed. tmpzr1t_l9r_go_relaxed.owl senescence Wikipedia:Senescence This term was made obsolete because its name is ambiguous and it is covered by the two more specific terms: 'organ senescence ; GO:0010260' and 'cell aging ; GO:0007569'. True biological_process owl:Class GO:0001529 biolink:NamedThing obsolete elastin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl elastin GO:0030023 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0005617 biolink:NamedThing obsolete larval serum protein-1 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl larval serum protein-1|LSP1 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0052057 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type III secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type III secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0052350 biolink:NamedThing obsolete induction by organism of induced systemic resistance in symbiont OBSOLETE. Any process in which an organism activates induced systemic resistance in the symbiont; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of ISR in symbiont|induction by organism of ISR in symbiont|induction by organism of induced systemic resistance in symbiont|activation by organism of induced systemic resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0051198 biolink:NamedThing obsolete negative regulation of coenzyme metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme. tmpzr1t_l9r_go_relaxed.owl down regulation of coenzyme metabolic process|negative regulation of coenzyme metabolism|negative regulation of coenzyme and prosthetic group metabolism|down-regulation of coenzyme metabolic process|negative regulation of coenzyme and prosthetic group metabolic process|inhibition of coenzyme metabolic process|downregulation of coenzyme metabolic process 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True biological_process owl:Class GO:0016285 biolink:NamedThing obsolete cytosol alanyl aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, preferentially alanine, from a wide range of peptides, amides and arylamides. tmpzr1t_l9r_go_relaxed.owl puromycin-sensitive aminopeptidase activity|human liver aminopeptidase|arylamidase activity|cytosol aminopeptidase III activity|soluble alanyl aminopeptidase activity|aminopolypeptidase activity|liver aminopeptidase activity|thiol-activated aminopeptidase activity|cytosol alanyl aminopeptidase activity EC:3.4.11.14|MetaCyc:3.4.11.14-RXN This term was made obsolete because it represents a gene product and refers to cellular component information. GO:0004177|GO:0008235 True molecular_function owl:Class GO:1903470 biolink:NamedThing obsolete actomyosin contractile ring assembly involved in mitotic cell cycle OBSOLETE. Any actomyosin contractile ring assembly that is involved in mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl constriction ring assembly involved in mitotic cell cycle|cytokinesis, contractile ring assembly involved in mitotic cell cycle|cytokinesis, actomyosin contractile ring formation involved in mitotic cell cycle|cytokinesis, actomyosin ring formation involved in mitotic cell cycle|cytokinesis, actomyosin contractile ring assembly involved in mitotic cell cycle|contractile ring assembly involved in mitotic cell cycle|cytokinesis, actomyosin ring biosynthesis involved in mitotic cell cycle This term was obsoleted at the TermGenie Gatekeeper stage. vw 2014-09-23T14:06:50Z True biological_process owl:Class GO:0030531 biolink:NamedThing obsolete small cytoplasmic ribonucleoprotein complex OBSOLETE. A complex composed of RNA of the small cytoplasmic RNA (scRNA) class and protein, found in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl scRNP|small cytoplasmic ribonucleoprotein|small cytoplasmic ribonucleoprotein complex GO:1990904 This term was made obsolete because it was not clearly defined. True cellular_component owl:Class GO:0003759 biolink:NamedThing obsolete glycoprotein-specific chaperone activity OBSOLETE. Assists in the correct, non-covalent assembly of glycoproteins in vivo, but is not a component of the assembled structures when performing its normal biological function. Utilizes a lectin site as a means to associate with the unfolded glycoproteins. tmpzr1t_l9r_go_relaxed.owl glycoprotein-specific chaperone activity This term was made obsolete because it represents a class of gene products and a biological process rather than a molecular function. GO:0006457|GO:0051082|GO:0044183 True molecular_function owl:Class GO:0003719 biolink:NamedThing obsolete transcription factor binding, cytoplasmic sequestering OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transcription factor binding, cytoplasmic sequestering GO:0042994 This term was made obsolete because sequestering is a process rather than a function. True molecular_function owl:Class GO:0007572 biolink:NamedThing obsolete age dependent decreased translational activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl age dependent decreased translational activity This term was made obsolete because it does not describe a biological process. GO:0007571 True biological_process owl:Class GO:0004882 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1902666 biolink:NamedThing obsolete protein localization to Mmi1 nuclear focus complex OBSOLETE. A process in which a protein is transported to, or maintained in, a location within a Mmi1 nuclear focus complex. tmpzr1t_l9r_go_relaxed.owl protein localisation in Mmi1 nuclear focus complex|protein localization in Mmi1 nuclear focus complex|protein localisation to Mmi1 nuclear focus complex https://github.com/geneontology/go-ontology/issues/19063 This term was obsoleted because there is no evidence that this process exists (no factor mediates the localization of proteins to Mmi1 nuclear foci) mah 2014-01-30T10:42:17Z True biological_process owl:Class GO:0052051 biolink:NamedThing obsolete interaction with host via protein secreted by type II secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other organism by a type II secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0003706 biolink:NamedThing obsolete ligand-regulated transcription factor activity OBSOLETE. Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II in response to a ligand. tmpzr1t_l9r_go_relaxed.owl ligand-regulated transcription factor activity This term was made obsolete because it does not convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. GO:0030374|GO:0004879 True molecular_function owl:Class GO:0007574 biolink:NamedThing obsolete cell aging (sensu Saccharomyces) OBSOLETE. Process associated with continued cell division (budding) by the mother cell. Age is often measured by counting the number of bud scars on the cell. tmpzr1t_l9r_go_relaxed.owl cell aging (sensu Saccharomyces) GO:0007569 This term was made obsolete because it does not describe a biological process that is distinct from 'cell aging'. True biological_process owl:Class GO:1903453 biolink:NamedThing obsolete RNA interference involved in olfactory learning OBSOLETE. Any RNA interference that is involved in olfactory learning. tmpzr1t_l9r_go_relaxed.owl RNAi involved in olfactory learning|posttranscriptional gene silencing by siRNA involved in olfactory learning https://github.com/geneontology/go-ontology/issues/18200 This term was obsoleted because it does not represent a specific pathway. kmv 2014-09-22T13:50:09Z True biological_process owl:Class GO:0042156 biolink:NamedThing obsolete zinc-mediated transcriptional activator activity OBSOLETE. Initiates or upregulates transcription in the presence of zinc. tmpzr1t_l9r_go_relaxed.owl zinc-mediated transcriptional activator activity This term was obsoleted because it is defined as a Process term, i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. True molecular_function owl:Class GO:0100041 biolink:NamedThing obsolete positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pseudohyphal growth. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052404 biolink:NamedThing obsolete negative regulation by host of symbiont peptidase activity OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont protease activity, the catalysis of the hydrolysis of peptide bonds in a protein. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by host of symbiont protease activity|inhibition of symbiont protease activity|down regulation by host of symbiont protease activity|down-regulation by host of symbiont protease activity|negative regulation by host of symbiont protease activity|downregulation by host of symbiont protease activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0102072 biolink:NamedThing obsolete 3-oxo-cis-Delta9-hexadecenoyl-[acp] reductase activity OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxy cis Delta9-hexadecenoyl-[acp] <=> NADPH + H+ + a 3-oxo-cis-Delta9-hexadecenoyl-[acp]. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21876 This term was obsoleted because it represents a specific substrate, and is beyond the specificity of GO. GO:0004316 True molecular_function owl:Class GO:0044113 biolink:NamedThing obsolete development in other organism involved in symbiotic interaction OBSOLETE. The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism. tmpzr1t_l9r_go_relaxed.owl development in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/20305 This term was obsoleted because it represents both a process and a location. jl 2009-07-30T02:32:38Z True biological_process owl:Class GO:0019025 biolink:NamedThing obsolete positive sense viral genome OBSOLETE. A single stranded RNA genome with the same nucleotide polarity as mRNA. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0006945 biolink:NamedThing obsolete nuclear fusion during karyogamy OBSOLETE. The fusion of two haploid nuclei to form a single diploid nucleus, as seen in the yeast mating process. tmpzr1t_l9r_go_relaxed.owl nuclear fusion during karyogamy This term was made obsolete because it is redundant outside the context of Saccharomyces biology. GO:0000741 True biological_process owl:Class GO:1905106 biolink:NamedThing obsolete response to Dizocilpine OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Dizocilpine stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-04-04T20:26:52Z True biological_process owl:Class GO:0075156 biolink:NamedThing obsolete regulation of G protein-coupled receptor signaling pathway in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its G protein-coupled receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of G-protein coupled receptor protein signaling pathway in response to host|regulation of symbiont G-protein coupled receptor protein-mediated signal transduction in response to host|regulation of G-protein coupled receptor protein signalling pathway in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0035300 biolink:NamedThing obsolete inositol-1,3,4-trisphosphate 5/6-kinase activity OBSOLETE. Catalysis of the reactions: ATP + 1D-myo-inositol 1,3,4-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate, and ATP + 1D-myo-inositol 1,3,4-trisphosphate = ADP + 1D-myo-inositol 1,3,4,6-tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol 1,3,4-trisphosphate 6-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|inositol trisphosphate 5/6-kinase activity|Ins(1,3,4)P3 5/6-kinase activity|IP56K|ATP:1D-myo-inositol 1,3,4-trisphosphate 5-phosphotransferase activity|inositol 1,3,4-trisphosphate 5-kinase activity This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0052725|GO:0052726 True molecular_function owl:Class GO:0006460 biolink:NamedThing obsolete peptidyl-prolyl isomerase B reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peptidyl-prolyl isomerase B reaction This term was made obsolete because it represents a molecular function and not a biological process. GO:0003755 True biological_process owl:Class GO:0055066 biolink:NamedThing obsolete di-, tri-valent inorganic cation homeostasis OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent cations within an organism or cell. tmpzr1t_l9r_go_relaxed.owl di-, tri-valent inorganic cation homeostasis This term was made obsolete because it has been split. GO:0072507|GO:0072508 True biological_process owl:Class GO:0045866 biolink:NamedThing obsolete positive regulation of recombination within rDNA repeats OBSOLETE. Any process that activates or increases the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl positive regulation of recombination within rDNA repeats This term was made obsolete because it describes a substrate-specific process. GO:0045951 True biological_process owl:Class GO:0045045 biolink:NamedThing obsolete secretory pathway OBSOLETE. The pathway along which proteins and other substances are moved around and out of the cell. After synthesis on the ribosomes of the endoplasmic reticulum (ER), completed polypeptide chains are moved to the Golgi complex and subsequently sorted to various destinations. Proteins synthesized and sorted in the secretory pathway include not only those that are secreted from the cell but also enzymes and other resident proteins in the lumen of the ER, Golgi, and lysosomes as well as integral proteins in the membranes of these organelles and the plasma membrane. tmpzr1t_l9r_go_relaxed.owl secretory pathway GO:0032940 This term was made obsolete because it artificially groups a number of other terms, leading to path problems, its definition is unclear (and lacks genus-differentia features), and it has probably been used incorrectly in annotations. True biological_process owl:Class GO:0052144 biolink:NamedThing obsolete negative energy taxis in host OBSOLETE. The directed movement of a motile cell or organism within its host organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative energy taxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0042576 biolink:NamedThing obsolete aspartyl aminopeptidase activity OBSOLETE. Catalysis of the release of an N-terminal aspartate or glutamate from a peptide, with a preference for aspartate. tmpzr1t_l9r_go_relaxed.owl aspartyl aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030804 biolink:NamedThing obsolete positive regulation of cyclic nucleotide biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl positive regulation of cyclic nucleotide anabolism|up regulation of cyclic nucleotide biosynthetic process|upregulation of cyclic nucleotide biosynthetic process|positive regulation of cyclic nucleotide biosynthesis|positive regulation of cyclic nucleotide formation|stimulation of cyclic nucleotide biosynthetic process|positive regulation of cyclic nucleotide synthesis|up-regulation of cyclic nucleotide biosynthetic process|activation of cyclic nucleotide biosynthetic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0072467 biolink:NamedThing obsolete response to cell shape checkpoint signaling OBSOLETE. A process that occurs in response to signals generated as a result of cell shape checkpoint signaling. tmpzr1t_l9r_go_relaxed.owl cell shape checkpoint effector process|response to signal involved in cell shape checkpoint This term was made obsolete because it was ambiguous. mah 2010-12-09T11:44:11Z True biological_process owl:Class GO:0022825 biolink:NamedThing obsolete copper-exporting ATPase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl copper-exporting ATPase activity GO:0043682 This term was made obsolete because it was a placeholder during work on transporter terms, and was not defined. True molecular_function owl:Class GO:0052007 biolink:NamedThing obsolete biosynthesis by symbiont of substance in host OBSOLETE. The chemical reactions and pathways performed by an organism in its host resulting in the formation of substances. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl biosynthesis by organism of substance in host https://github.com/geneontology/go-ontology/issues/18787 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0005373 biolink:NamedThing obsolete heavy metal ion porter activity OBSOLETE. A transporter of heavy metal ions that utilizes a carrier-mediated process to catalyze uniport, symport or antiport between aqueous phases on either side of a lipid membrane. tmpzr1t_l9r_go_relaxed.owl heavy metal ion porter activity|metal ion transporter This term was made obsolete because it represents a gene product and not a molecular function. GO:0015291|GO:0046873 True molecular_function owl:Class GO:0015597 biolink:NamedThing obsolete histidine/arginine/lysine/ornithine porter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in). tmpzr1t_l9r_go_relaxed.owl histidine/arginine/lysine/ornithine porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0000064|GO:0005290|GO:0061459|GO:0015426|GO:0015189 True molecular_function owl:Class GO:0004205 biolink:NamedThing obsolete caspase-8 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-8 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052571 biolink:NamedThing obsolete response to symbiont immune response OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to symbiont immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0070055 biolink:NamedThing obsolete mRNA endonucleolytic cleavage involved in unfolded protein response OBSOLETE. The endonucleolytic cleavage of a mRNA containing an HAC1-type intron at the 5' and 3' splice sites. The cleavage step is part of unconventional mRNA splicing, and contributes to the endoplasmic reticulum unfolded protein response. tmpzr1t_l9r_go_relaxed.owl HAC1-type intron splice site recognition and cleavage|ERN1-mediated XBP-1 mRNA cleavage|XBP1 mRNA cleavage|HAC1 mRNA cleavage|IRE1-mediated XBP-1 mRNA cleavage The reason for obsoletion is that this process represents a single step (molecular function) of the IRE1-mediated unfolded protein response (GO:0036498). GO:0036498 True biological_process owl:Class GO:1990241 biolink:NamedThing obsolete nucleotide binding complex OBSOLETE. A protein complex that interacts selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. An example of this is STING in E. coli (Q86WV6). tmpzr1t_l9r_go_relaxed.owl nucleotide binding complex This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2013-11-22T16:22:07Z True cellular_component owl:Class GO:0017026 biolink:NamedThing obsolete procollagen C-endopeptidase activity OBSOLETE. Catalysis of the cleavage of the C-terminal propeptide at Ala-Asp in type I and II procollagens and at Arg-Asp in type III. tmpzr1t_l9r_go_relaxed.owl procollagen carboxy-terminal proteinase activity|procollagen peptidase activity|procollagen C-terminal proteinase activity|procollagen C-proteinase activity|procollagen C-terminal peptidase activity|carboxyprocollagen peptidase activity|procollagen carboxypeptidase activity|BMP1|procollagen C-endopeptidase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0046242 biolink:NamedThing obsolete o-xylene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl o-xylene anabolism|o-xylene biosynthetic process|ortho-xylene biosynthesis|o-xylene synthesis|ortho-xylene biosynthetic process|o-xylene formation|o-xylene biosynthesis GO:0018950 This term was made obsolete because o-xylene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0052118 biolink:NamedThing obsolete positive energy taxis in host environment OBSOLETE. The directed movement of a motile cell or organism on, within or near its host organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive energy taxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0051847 biolink:NamedThing obsolete active evasion of symbiont immune response via regulation of symbiont complement system OBSOLETE. Any mechanism of active immune avoidance which works by regulating the symbiont complement system, e.g. by possessing complement receptors which mediate attachment to, then infection of, symbiont macrophages, which are eventually destroyed. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active immune evasion via regulation of symbiont complement system|active evasion of symbiont immune response via regulation of symbiont complement system|active immune evasion via modulation of symbiont complement system This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class has_output biolink:NamedThing has output tmpzr1t_l9r_go_relaxed.owl RO:0002234 external has_output GO:0071538 biolink:NamedThing obsolete SH2 domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an SH2 domain interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-08T03:46:16Z True biological_process owl:Class GO:0000733 biolink:NamedThing obsolete DNA strand renaturation OBSOLETE. The identification and annealing of complementary base pairs in single-strand DNA. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14671 This term was obsoleted because it represents a molecular function. GO:0036310 True biological_process owl:Class GO:0009023 biolink:NamedThing obsolete tRNA sulfurtransferase OBSOLETE. Catalysis of the reaction: L-cysteine + activated-tRNA = L-serine + tRNA containing a thionucleotide. tmpzr1t_l9r_go_relaxed.owl tRNA sulfurtransferase|tRNA sulphurtransferase activity GO:0034227 GO:0016783 True molecular_function owl:Class RO:0002343 biolink:NamedThing results in growth of tmpzr1t_l9r_go_relaxed.owl RO:0002343 external results_in_growth_of GO:0010141 biolink:NamedThing obsolete guanine, xanthine and their nucleoside salvage OBSOLETE. The pathway by which guanine, xanthine and their nucleoside from purine nucleotides breakdown are converted back to purine nucleotides. The pathway is important in cells where there is no de-novo purine nucleotides biosynthesis. tmpzr1t_l9r_go_relaxed.owl guanine, xanthine and their nucleoside salvage This term was made obsolete because it represents multiple processes that are represented elsewhere in the process ontology. GO:0043103|GO:0006178|GO:0006190|GO:0006179 True biological_process owl:Class GO:1902879 biolink:NamedThing obsolete negative regulation of BMP signaling pathway involved in spinal cord association neuron specification OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of BMP signaling pathway involved in spinal cord association neuron specification. tmpzr1t_l9r_go_relaxed.owl downregulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|downregulation of BMP signalling pathway involved in spinal cord association neuron specification|down-regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|inhibition of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|down regulation of BMP signalling pathway involved in spinal cord association neuron specification|inhibition of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|down regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|inhibition of BMP signaling pathway involved in spinal cord association neuron specification|negative regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|inhibition of BMP signalling pathway involved in spinal cord association neuron specification|down-regulation of BMP signaling pathway involved in spinal cord association neuron specification|downregulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|negative regulation of BMP signalling pathway involved in spinal cord association neuron specification|negative regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|down regulation of BMP signaling pathway involved in spinal cord association neuron specification|down regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|down-regulation of BMP signalling pathway involved in spinal cord association neuron specification|downregulation of BMP signaling pathway involved in spinal cord association neuron specification|down-regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification The reason for obsoletion is that this term represents a GO-CAM model. mr 2014-04-03T15:25:38Z True biological_process owl:Class GO:0008487 biolink:NamedThing obsolete prenyl-dependent CAAX protease activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl prenyl-dependent CAAX protease activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0046142 biolink:NamedThing obsolete negative regulation of coenzyme and prosthetic group metabolic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl negative regulation of coenzyme and prosthetic group metabolic process This term was made obsolete because it was replaced by more specific terms. GO:0051201 True biological_process owl:Class GO:1904085 biolink:NamedThing obsolete positive regulation of epiboly OBSOLETE. Any process that activates or increases the frequency, rate or extent of epiboly. tmpzr1t_l9r_go_relaxed.owl activation of epiboly|upregulation of epiboly|positive regulation of epiboly|up regulation of epiboly|up-regulation of epiboly This term was obsoleted at the TermGenie Gatekeeper stage. dos 2015-03-25T10:53:47Z True biological_process owl:Class GO:0030363 biolink:NamedThing obsolete pre-mRNA cleavage factor activity OBSOLETE. Any activity required for the process of mRNA cleavage. tmpzr1t_l9r_go_relaxed.owl pre-mRNA cleavage factor activity This term was made obsolete because it describes a biological process. GO:0006379 True molecular_function owl:Class GO:1901718 biolink:NamedThing obsolete regulation of dipeptide transmembrane transport by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of dipeptide transmembrane transport. tmpzr1t_l9r_go_relaxed.owl The term was obsoleted because it is better represented by a GO-CAM model. pr 2012-12-19T17:04:04Z True biological_process owl:Class GO:1903694 biolink:NamedThing obsolete positive regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation OBSOLETE. Any process that activates or increases the frequency, rate or extent of mitotic G1 cell cycle arrest in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl positive regulation of G1 mitotic cell cycle arrest in response to nitrogen starvation|up-regulation of G1 mitotic cell cycle arrest in response to nitrogen starvation|upregulation of mitotic G1 cell cycle arrest in response to nitrogen starvation|upregulation of G1 mitotic cell cycle arrest in response to nitrogen starvation|activation of G1 mitotic cell cycle arrest in response to nitrogen starvation|up-regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation|up regulation of G1 mitotic cell cycle arrest in response to nitrogen starvation|up regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation|activation of mitotic G1 cell cycle arrest in response to nitrogen starvation https://github.com/geneontology/go-ontology/issues/20989 This term was obsoleted because it does not represent a specific process. al 2014-12-02T18:16:16Z True biological_process owl:Class GO:0048610 biolink:NamedThing obsolete cellular process involved in reproduction OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism. tmpzr1t_l9r_go_relaxed.owl reproductive cellular process|cellular process involved in reproduction This process was made obsolete because we felt it not provide a particularly useful classification, and its very broad logical definition caused regular problems in our inference pipelines. True biological_process owl:Class GO:0044402 biolink:NamedThing obsolete competition with other organism OBSOLETE. Any process in which an organism within a multispecies community gains an advantage in growth or survival over another organism of a different species in that community. tmpzr1t_l9r_go_relaxed.owl competition with another organism|interspecies competition https://github.com/geneontology/go-ontology/issues/18568 This term was obsoleted because it is outside the scope of GO. True biological_process owl:Class GO:0100029 biolink:NamedThing obsolete regulation of histone modification by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone modification. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052467 biolink:NamedThing obsolete modulation by organism of symbiont salicylic acid-mediated defense response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont salicylic acid-mediated defense response|modulation by organism of symbiont SA-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0030463 biolink:NamedThing obsolete cell aging (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cell aging (sensu Fungi) GO:0007569 This term was made obsolete because it does not describe a biological process that is distinct from 'cell aging'. True biological_process owl:Class GO:0001324 biolink:NamedThing obsolete age-dependent response to oxidative stress involved in chronological cell aging OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring in non-dividing cells as they age as a result of oxidative stress, where the change varies according to the age of the cell or organism. tmpzr1t_l9r_go_relaxed.owl age-dependent response to oxidative stress during chronological cell aging|age-dependent response to oxidative stress during chronological cell ageing https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0044838|GO:0090398 True biological_process owl:Class GO:1905714 biolink:NamedThing obsolete mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium ion concentration OBSOLETE. Any mitochondrial calcium release that is involved in regulation of presynaptic cytosolic calcium ion concentration. tmpzr1t_l9r_go_relaxed.owl mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium levels|calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium levels|calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium ion concentration This term was obsoleted at the TermGenie Gatekeeper stage. dos 2016-11-23T15:56:01Z True biological_process owl:Class GO:0019021 biolink:NamedThing obsolete DNA viral genome OBSOLETE. A viral genome composed of deoxyribonucleic acid. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0015263 biolink:NamedThing obsolete amine/amide/polyamine channel activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl amine/amide/polyamine channel activity This term was made obsolete because it represents three molecular functions. GO:0015203|GO:0005275|GO:0042887 True molecular_function owl:Class GO:0016569 biolink:NamedThing obsolete covalent chromatin modification OBSOLETE. The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. tmpzr1t_l9r_go_relaxed.owl chromatin modification https://github.com/geneontology/go-ontology/issues/22062 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0000194 biolink:NamedThing obsolete inactivation of MAPK (pseudohyphal growth) OBSOLETE. Downregulation of MAP kinase activity in the context of regulating pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0052014 biolink:NamedThing obsolete catabolism by symbiont of host protein OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of protein macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host protein https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0097299 biolink:NamedThing obsolete cysteine-type endopeptidase activity involved in plant-type hypersensitive response OBSOLETE. Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to plant-type hypersensitive response, the rapid, localized death of plant cells in response to invasion by a pathogen. tmpzr1t_l9r_go_relaxed.owl metacaspase activity involved in plant-type hypersensitive response This term was obsoleted because it represents a GO-CAM model. pr 2012-05-04T02:09:55Z True molecular_function owl:Class GO:0021912 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results the commitment of a cell to become a motor neuron in the ventral spinal cord. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0021520|GO:0006357 True biological_process owl:Class GO:0045784 biolink:NamedThing obsolete positive regulation of calcium in ER OBSOLETE. Any process that increases the concentration of calcium in the ER. tmpzr1t_l9r_go_relaxed.owl positive regulation of calcium in ER This term was made obsolete because the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport'). GO:0005783|GO:0006874 True biological_process owl:Class GO:0033159 biolink:NamedThing obsolete negative regulation of protein import into nucleus, translocation OBSOLETE. Any process that stops, prevents or reduces the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl negative regulation of protein import into cell nucleus, translocation This term has been obsoleted because it represents a substep of the parent (GO:0006606 protein import into nucleus), has been incorrectly used. True biological_process owl:Class GO:0015283 biolink:NamedThing obsolete apoptogenic cytochrome c release channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl Bcl-2|apoptogenic cytochrome c release channel activity This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0036283 biolink:NamedThing obsolete positive regulation of transcription factor import into nucleus in response to oxidative stress OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus under conditions of oxidative stress. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription factor import into nucleus in response to hydrogen peroxide The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus. GO:0042307|GO:0034599 bf 2012-07-11T01:46:10Z True biological_process owl:Class GO:0044150 biolink:NamedThing obsolete development of host on or near symbiont surface OBSOLETE. The progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl development of organism on or near symbiont surface The reason for obsoletion is this term represents both a process and a component. jl 2009-08-06T03:15:52Z True biological_process owl:Class GO:0100047 biolink:NamedThing obsolete negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates inositol biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0016511 biolink:NamedThing obsolete endothelin-converting enzyme activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl endothelin-converting enzyme activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1901573 biolink:NamedThing obsolete chemical substance catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of chemical substance. tmpzr1t_l9r_go_relaxed.owl chemical substance catabolism|chemical substance degradation|chemical substance catabolic process|chemical substance breakdown This term was obsoleted at the TermGenie Gatekeeper stage. pr 2012-11-04T18:10:36Z True biological_process owl:Class GO:0052563 biolink:NamedThing obsolete negative regulation by organism of symbiont immune response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0090020 biolink:NamedThing obsolete regulation of transcription involved in posterior neural plate formation OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the posterior neural plate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0090018|GO:0006357 tb 2009-07-29T11:39:29Z True biological_process owl:Class GO:0019018 biolink:NamedThing obsolete bipartite viral genome OBSOLETE. A segmented viral genome consisting of two sub-genomic nucleic acids but each nucleic acid is packaged into a different virion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0003780 biolink:NamedThing obsolete actin cross-linking activity OBSOLETE. Interacting selectively with two actin filaments to anchor them together. tmpzr1t_l9r_go_relaxed.owl actin cross-linking activity This term was made obsolete because it represents a combination of molecular functions. GO:0051015|GO:0030674 True molecular_function owl:Class GO:0016808 biolink:NamedThing obsolete proprotein convertase activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl proprotein convertase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0050426 biolink:NamedThing obsolete peptidyl-glycinamidase activity OBSOLETE. Catalysis of the reaction: H2O + peptidyl-glycinamide = glycinamide + peptide. Cleavage of C-terminal glycinamide from a polypeptide. tmpzr1t_l9r_go_relaxed.owl carboxamidopeptidase activity|carboxyamidase activity|peptidyl-glycinamidase activity|peptidyl amino acid amide hydrolase activity|peptidyl carboxyamidase activity|peptidyl carboxy-amidase activity GO:0008242 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0004988 biolink:NamedThing obsolete mu-opioid receptor activity OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of mu-opioid receptors, including high affinity for enkephalins and beta-endorphin but low affinity for dynorphins. tmpzr1t_l9r_go_relaxed.owl mu-opioid receptor activity Wikipedia:Mu_Opioid_receptor This term was made obsolete because the receptor is defined based on its pharmacological properties. GO:0038046|GO:0038047|GO:0004979 True molecular_function owl:Class GO:0052480 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont jasmonic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway|negative regulation by organism of defense-related symbiont JA-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1990800 biolink:NamedThing obsolete meiotic APC-fizzy-related complex OBSOLETE. An anaphase promoting complex bound to a fizzy-related family APC activator that regulates meiotic exit by activating the APC/C to target meiotic cyclins for destruction during meiosis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-07-16T10:37:05Z True cellular_component owl:Class GO:0052308 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism modulates the frequency, rate or extent of the innate immune response, the first line of defense against infection, of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism during symbiotic interaction|pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction This term was obsoleted because it has been misused. GO:0002752|GO:0052034|GO:0002221 True biological_process owl:Class GO:0016988 biolink:NamedThing obsolete transcription initiation factor antagonist activity OBSOLETE. The function of binding to a transcription factor and stopping, preventing or reducing the rate of its transcriptional activity. tmpzr1t_l9r_go_relaxed.owl transcription initiation factor antagonist activity|transcriptional initiation factor antagonist activity This term was obsoleted because its definition was vague and apparently broader in scope than the name of the term suggested it was intended to be. True molecular_function owl:Class GO:0100052 biolink:NamedThing obsolete negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates G1/S transition of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0039569 biolink:NamedThing obsolete suppression by virus of host STAT2 activity by positive regulation of STAT2 catabolic process OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host STAT2 (signal transducer and activator of transcription-2) by promoting the ubiquitin-dependent degradation of STAT2, mediated by the proteasome. tmpzr1t_l9r_go_relaxed.owl targeting STAT2 for proteasome-mediated degradation|promotion by virus of proteosome-dependent STAT2 degradation|suppression by virus of host STAT2 activity by positive promotion of STAT2 proteasome-mediated degradation The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:43:44Z True biological_process owl:Class GO:0052185 biolink:NamedThing obsolete modification of structure of other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in an anatomical part or cellular component of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of structure of other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0005013 biolink:NamedThing obsolete neurotrophin TRK receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl neurotrophin TRK receptor activity This term was made obsolete because it represents a gene product. GO:0007165|GO:0019838|GO:0043121|GO:0004714 True molecular_function owl:Class GO:0005800 biolink:NamedThing obsolete COPII vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl COPII vesicle This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology suggested that a new term was required. GO:0030134 True cellular_component owl:Class GO:0007261 biolink:NamedThing obsolete JAK-induced STAT protein dimerization OBSOLETE. The formation of a dimer of two STAT proteins (Signal Transducers and Activators of Transcription) following their activation by members of the janus activated kinase (JAK) family of tyrosine kinases. tmpzr1t_l9r_go_relaxed.owl JAK-induced STAT protein dimerization This term was made obsolete because it is ambiguous, and protein dimerization is represented by molecular function terms. GO:0007260|GO:0046983 True biological_process owl:Class GO:0039546 biolink:NamedThing obsolete suppression by virus of host MAVS activity by MAVS proteolysis OBSOLETE. The chemical reactions and pathways performed by a virus resulting in the hydrolysis of the host MAVS (mitochondrial inhibitor of viral signaling) protein by cleavage of peptide bonds, thereby inhibiting the host innate immune response. For example, MAVS harbors a C-terminal transmembrane domain that targets it to the mitochondrial outer membrane; cleavage within this domain removes MAVS from the membrane, thus preventing it from signaling. tmpzr1t_l9r_go_relaxed.owl viral protease cleavage of MAVS The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-19T02:49:44Z True biological_process owl:Class GO:0120038 biolink:NamedThing obsolete plasma membrane bounded cell projection part OBSOLETE. Any constituent part of a plasma membrane bounded cell projection, a prolongation or process extending from a cell, e.g. a cilium or axon. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/13298 GO:0120025 krc 2017-04-28T17:20:43Z True cellular_component owl:Class GO:0003788 biolink:NamedThing obsolete actin monomer sequestering activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin monomer sequestering activity GO:0042989 This term was made obsolete because sequestering is a process, not an activity. True molecular_function owl:Class GO:0001627 biolink:NamedThing obsolete leucine-rich G-protein receptor-like receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl LGR-like receptor|leucine-rich G protein receptor-like receptor activity|leucine-rich G-protein receptor-like receptor activity This term was made obsolete because it represents a gene product, was not defined, and is named based on protein features. True molecular_function owl:Class GO:0008500 biolink:NamedThing obsolete glycine-, glutamate-, thienylcyclohexylpiperidine binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl glycine-, glutamate-, thienylcyclohexylpiperidine binding This term was made obsolete because it is a conglomeration of three terms. GO:0016595|GO:0016596|GO:0016594 True molecular_function owl:Class GO:0045826 biolink:NamedThing obsolete positive regulation of intermediate filament polymerization and/or depolymerization OBSOLETE. Any process that activates or increases the frequency, rate or extent of intermediate filament polymerization and/or depolymerization. tmpzr1t_l9r_go_relaxed.owl positive regulation of intermediate filament polymerization and/or depolymerization This term was made obsolete because it has been split. GO:0030841|GO:0030844 True biological_process owl:Class GO:0043275 biolink:NamedThing obsolete glutamate carboxypeptidase II activity OBSOLETE. Catalysis of the reaction: N-acetyl-L-Asp-L-Glu + H2O = N-acetyl-L-Asp + L-Glu. tmpzr1t_l9r_go_relaxed.owl glutamate carboxypeptidase II activity|prostate-specific membrane antigen|PSMA|folate hydrolase activity|pteroylpolyglutamic acid hydrolase activity|N-acetylated-alpha-linked-amino dipeptidase activity|N-acetylated-gamma-linked-acidic dipeptidase activity|pteroylpoly-gamma-glutamate hydrolase activity|NAALA dipeptidase activity|prostrate-specific membrane antigen|microsomal gamma-glutamyl carboxypeptidase|pteroylpolyglutamate hydrolase activity|PSM antigen|N-acetylated-gamma-linked-acidic dipeptidase (NAALADase)|pteroylpolygammaglutamyl hydrolase activity|acetylaspartylglutamate dipeptidase activity|pteroylpoly-gamma-glutamate carboxypeptidase activity|folylpolyglutamate hydrolase activity|mGCP|N-acetylated alpha-linked acidic dipeptidase activity|rat NAAG peptidase|NAALADase activity|membrane glutamate carboxypeptidase GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005206 biolink:NamedThing obsolete heparin sulfate proteoglycan OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl heparin sulphate proteoglycan|heparin sulfate proteoglycan This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0039577 biolink:NamedThing obsolete suppression by virus of host JAK1 activity by negative regulation of JAK1 phosphorylation OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host JAK1 (Janus Kinase 1) activity by stopping, preventing or reducing tyrosine phosphorylation of JAK1 and thereby activation of JAK1. tmpzr1t_l9r_go_relaxed.owl The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf True biological_process owl:Class GO:0009461 biolink:NamedThing obsolete cytochrome c OBSOLETE. A cytochrome containing heme bound to the protein by one or, more (commonly two) thioether bonds involving sulfhydryl groups of cysteine residues. tmpzr1t_l9r_go_relaxed.owl GO:0008121 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052499 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent modulation by organism of symbiont innate immunity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl pathogen-associated molecular pattern dependent modulation by organism of symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0039510 biolink:NamedThing obsolete suppression by virus of host ATP-dependent RNA helicase activity OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host ATP-dependent RNA helicase activity. tmpzr1t_l9r_go_relaxed.owl down-regulation by virus of host ATP-dependent RNA helicase activity|inhibition by virus of host ATP-dependent RNA helicase activity|negative regulation by virus of host ATP-dependent RNA helicase activity|downregulation by virus of host ATP-dependent RNA helicase activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. bf 2011-06-16T02:11:00Z True biological_process owl:Class GO:0017088 biolink:NamedThing obsolete X-Pro dipeptidyl-peptidase activity OBSOLETE. Catalysis of the hydrolysis of the terminal bond of Xaa-Pro-Xaa motifs to release unblocked, N-terminal dipeptides from substrates including Ala-Pro-para-nitroanilide and (sequentially, at the second, fourth and sixth bonds) of the motif Tyr-Pro-Phe-Pro-Gly-Pro-Ile. tmpzr1t_l9r_go_relaxed.owl X-Pro dipeptidyl-peptidase activity|Xaa-Pro dipeptidyl-peptidase activity|X-prolyl dipeptidyl peptidase activity|PepX|X-prolyl dipeptidyl aminopeptidase activity GO:0008239 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003840 biolink:NamedThing obsolete gamma-glutamyltransferase activity OBSOLETE. Catalysis of the reaction: (5-L-glutamyl)-peptide + an amino acid = peptide + 5-L-glutamyl-amino acid. tmpzr1t_l9r_go_relaxed.owl alpha-glutamyl transpeptidase activity|L-gamma-glutamyltransferase activity|gamma-glutamyl transpeptidase activity|glutamyl transpeptidase activity|(5-L-glutamyl)-peptide:amino-acid 5-glutamyltransferase activity|L-glutamyltransferase activity|gamma-GPT|L-gamma-glutamyl transpeptidase activity|gamma-GT|gamma-GTP|gamma-glutamyl peptidyltransferase activity KEGG_REACTION:R04159|MetaCyc:GAMMA-GLUTAMYLTRANSFERASE-RXN|EC:2.3.2.2 This term was obsoleted because it does not correspond to a physiological reaction. Usage comment: The gene family commonly referred to as gamma-glutamyl transferases (GGT) catalyze hydrolysis of gamma-glutamyl bonds in gamma-glutamyl compounds such as glutathione. In a test tube one can set up conditions in which the enzyme will transfer the gamma-glutamyl portion of the substrate to an acceptor molecule, but this requires non-physiologic conditions, including millmolar concentrations of an acceptor such as glygly. This reaction is used in assays to detect the presence of the enzyme, but is not a physiological function of members of the GGT family (PMC4388159), which should be annotated to a suitable hydrolysis term instead (e.g. glutathione hydrolase activity). GO:0036374 True molecular_function owl:Class GO:0100060 biolink:NamedThing obsolete negative regulation of SREBP signaling pathway by DNA binding OBSOLETE. Any DNA binding that negatively regulates SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term should be represented by a GO-CAM model. cjm 2015-04-02T04:13:19Z True molecular_function owl:Class GO:0019804 biolink:NamedThing obsolete quinolinate synthetase complex OBSOLETE. A heterodimer which acts as a quinolinate synthetase; quinolinate synthetase B (L-aspartate oxidase) catalyzes the oxidation of L-aspartate to L-iminoaspartate; quinolinate synthetase A condenses L-imidoaspartate and dihydroxyacetone to quinolinate. tmpzr1t_l9r_go_relaxed.owl quinolinate synthetase complex This term was made obsolete because there is no evidence that a physical complex forms; although the phrase "quinolinate synthetase complex" is occasionally used in the literature, it refers to two enzymes that act as monomers. GO:0008743|GO:0008987 True cellular_component owl:Class GO:0044713 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005805 biolink:NamedThing obsolete ER-Golgi transport vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ER-Golgi transport vesicle This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology suggested that a new term was required. GO:0030134 True cellular_component owl:Class GO:0017107 biolink:NamedThing obsolete anion exchanger adaptor activity OBSOLETE. The binding activity of a molecule that brings together an anion exchanger and one or more other molecules, permitting them to function in a coordinated way. tmpzr1t_l9r_go_relaxed.owl The term was made obsolete because it referred to an interaction of an anion transporter with the AP1 adaptor by which it is probably transported, see: PMID:22744004; PMID:20833140; ie the adaptor does not specifically target an anion adaptor. True molecular_function owl:Class GO:0016187 biolink:NamedThing obsolete synaptic vesicle internalization OBSOLETE. Internalization of the contents of a synaptic vesicle into the postsynaptic membrane following endocytosis. tmpzr1t_l9r_go_relaxed.owl synaptic vesicle internalization This term was made obsolete because it was wrongly defined. GO:0016192 True biological_process owl:Class GO:0030568 biolink:NamedThing obsolete plasmin inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase plasmin. tmpzr1t_l9r_go_relaxed.owl plasmin inhibitor activity GO:0004867 This term was made obsolete because it represents a regulator of an obsolete molecular function. True molecular_function owl:Class GO:0006854 biolink:NamedThing obsolete ATP/ADP exchange OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ATP/ADP exchange GO:0005471 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0097235 biolink:NamedThing obsolete positive regulation of fatty acid beta-oxidation by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. pr 2012-02-01T05:07:12Z True biological_process owl:Class GO:0004716 biolink:NamedThing obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. tmpzr1t_l9r_go_relaxed.owl receptor signaling protein tyrosine kinase activity|receptor signalling protein tyrosine kinase activity https://github.com/geneontology/go-ontology/issues/14232 EC:2.7.10.- This term was obsoleted because it was not clearly defined. True molecular_function owl:Class GO:0016945 biolink:NamedThing obsolete RNA polymerase III transcription elongation factor activity OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase III following transcription initiation. tmpzr1t_l9r_go_relaxed.owl Pol III transcription elongation factor activity|RNA polymerase III transcription elongation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006385 True molecular_function owl:Class GO:0009477 biolink:NamedThing obsolete cytochrome c1 OBSOLETE. A cytochrome c that is an integral component of the mitochondrial respiratory complex III. Functions as an electron donor to cytochrome c. tmpzr1t_l9r_go_relaxed.owl cytochrome c1 GO:0004129 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008550 biolink:NamedThing obsolete tubulin GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. An intrinsic activity of alpha-tubulin involved in tubulin folding, division plane formation in prokaryotic cells and others. tmpzr1t_l9r_go_relaxed.owl tubulin GTPase activity This term was made obsolete because it represents a gene product. GO:0003924|GO:0007021 True molecular_function owl:Class GO:0008164 biolink:NamedThing obsolete organophosphorus resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl organophosphorus resistance GO:0046683 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0100030 biolink:NamedThing obsolete regulation of histone acetylation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone acetylation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0051815 biolink:NamedThing obsolete migration in other organism involved in symbiotic interaction OBSOLETE. The directional movement of an organism from one place to another within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl migration within other organism during symbiotic interaction|migration in other organism during symbiotic interaction This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0052531 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont calcium ion flux OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of fluxes of calcium ions that occur as part of the defense response of a host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related symbiont calcium ion flux|positive regulation by organism of defense-related symbiont Ca2+ flux This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1900830 biolink:NamedThing obsolete D-tyrosine biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of D-tyrosine. tmpzr1t_l9r_go_relaxed.owl D-tyrosine biosynthesis|D-tyrosine synthesis|D-tyrosine anabolism|D-tyrosine formation https://github.com/geneontology/go-ontology/issues/20583 This term was obsoleted because there is no evidence that this process exists. se 2012-06-06T09:27:31Z True biological_process owl:Class GO:0051845 biolink:NamedThing obsolete passive evasion of symbiont immune response OBSOLETE. Any mechanism of immune avoidance that does not directly interfere with the symbiont immune system. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl passive immune evasion|passive evasion of symbiont immune response This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0052172 biolink:NamedThing obsolete metabolism by symbiont of host cell wall cellulose OBSOLETE. The chemical reactions and pathways performed by an organism involving cellulose in the cell wall of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0039570 biolink:NamedThing obsolete suppression by virus of host STAT2 activity by negative regulation of STAT protein import into nucleus OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT2 (signal transducer and activator of transcription-2) activity by retaining STAT2 in the cytoplasm, so STAT2 is unable to translocate to the nucleus to activate transcription of its target genes. tmpzr1t_l9r_go_relaxed.owl cytoplasmic sequestration of STAT2|cytoplasmic sequestering of STAT2 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:46:49Z True biological_process owl:Class GO:0007180 biolink:NamedThing obsolete transforming growth factor beta ligand binding to type II receptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl TGF-beta ligand binding to type II receptor|transforming growth factor beta ligand binding to type II receptor|TGFbeta ligand binding to type II receptor This term was made obsolete because it represents a function. GO:0005160|GO:0050431|GO:0005026 True biological_process owl:Class GO:0005071 biolink:NamedThing obsolete transmembrane receptor protein serine/threonine kinase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein serine/threonine kinase signaling protein activity|transmembrane receptor protein serine/threonine kinase signalling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0007178|GO:0035556 True molecular_function owl:Class RO:0002013 biolink:NamedThing has regulatory component activity tmpzr1t_l9r_go_relaxed.owl RO:0002013 external has_regulatory_component_activity GO:0008371 biolink:NamedThing obsolete biological process OBSOLETE. These are terms that have been removed from the active process ontology. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is unnecessary in the OBO flat file format. True biological_process owl:Class GO:0071523 biolink:NamedThing obsolete TIR domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a TIR domain interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-07T02:11:47Z True biological_process owl:Class GO:0045233 biolink:NamedThing obsolete natural killer cell receptor activity OBSOLETE. A receptor found on the surface of natural killer cells which binds Class I MHC antigens and is required for activation of NK activity. It belongs to the Ly49i family. tmpzr1t_l9r_go_relaxed.owl Ly49i|NK cell receptor activity|natural killer cell receptor activity This term was made obsolete because the receptor is defined based on its cellular expression pattern, and the definition is inaccurate: receptors on natural killer cells can either activate or inhibit natural killer (NK) cell-mediated cytotoxicity. GO:0002769|GO:0030101|GO:0004888 True molecular_function owl:Class GO:0075206 biolink:NamedThing obsolete positive regulation by host of symbiont cAMP-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of cAMP-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of symbiont cAMP-mediated signaling The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1903153 biolink:NamedThing obsolete ferrous iron transmembrane transporter activity involved in ferrous iron import into cell OBSOLETE. Any ferrous iron transmembrane transporter activity that is involved in ferrous iron import into cell. tmpzr1t_l9r_go_relaxed.owl ferrous iron transmembrane transporter activity involved in ferrous ion import into cell|ferrous iron transmembrane transporter activity involved in ferrous iron import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:53Z True molecular_function owl:Class GO:1990132 biolink:NamedThing obsolete release of misfolded protein from chaperone OBSOLETE. The release of misfolded proteins that are being held by the chaperone heat shock protein (Hsp) and targeting them for destruction by the Ub-proteasome machinery. tmpzr1t_l9r_go_relaxed.owl release of misfolded protein from chaperone This term was obsoleted at the TermGenie Gatekeeper stage. rb 2013-06-25T21:56:37Z True biological_process owl:Class GO:0010843 biolink:NamedThing obsolete promoter binding OBSOLETE. Binding to a regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery. tmpzr1t_l9r_go_relaxed.owl DNA binding, transcription promoter|promoter binding This term was made obsolete because the word "promoter" is used ambiguously in the literature. It sometimes is used to refer specifically to the "core promoter" region recognized by the basal transcription machinery, and other times is used to refer to a larger regulatory region composed of the core promoter and also the regulatory region adjacent (proximal) to the core promoter. The core promoter proximal region is typically recognized by "regulatory transcription factors", such as Gal4 in S. cerevisiae. GO:0001046|GO:0000976 True molecular_function owl:Class GO:0071898 biolink:NamedThing obsolete regulation of estrogen receptor binding OBSOLETE. Any process that modulates the frequency, rate or extent of estrogen receptor binding, interacting selectively with a an estrogen receptor. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19354 This term was obsoleted because it represents a molecular function. mah 2010-09-15T02:48:49Z True biological_process owl:Class GO:0043948 biolink:NamedThing obsolete induction by symbiont of host catalytic activity OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of host enzyme activity. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by symbiont of host enzyme activity|up regulation by symbiont of host enzyme activity|positive regulation by symbiont of host catalytic activity|activation of host enzyme activity|activation by symbiont of host enzyme activity|up-regulation by symbiont of host enzyme activity|positive regulation by symbiont of host enzyme activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:2000499 biolink:NamedThing obsolete negative regulation of induction of apoptosis in response to chemical stimulus OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of induction of apoptosis in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl negative regulation of induction of apoptosis in response to chemical substance|negative regulation of induction of apoptosis in response to chemical stimulus This term was made obsolete because it is ill-defined. yaf 2011-03-18T02:35:44Z True biological_process owl:Class GO:1990372 biolink:NamedThing obsolete process resulting in tolerance to organic acid OBSOLETE. A response that results in a state of tolerance to organic acid. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a clear process. tt 2014-04-23T22:34:12Z True biological_process owl:Class GO:0052225 biolink:NamedThing obsolete energy taxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism on or near a second organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl energy taxis on or near other organism during symbiotic interaction This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1990480 biolink:NamedThing obsolete geranyl diphosphate synthase OBSOLETE. Catalyzes the condensation of dimethylallyl diphosphate and isopentenyl diphosphate to geranyl diphosphate, the key precursor of monoterpene biosynthesis. tmpzr1t_l9r_go_relaxed.owl GO:0004161 This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-09-10T01:14:17Z True molecular_function owl:Class GO:0055114 biolink:NamedThing obsolete oxidation-reduction process OBSOLETE. A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. tmpzr1t_l9r_go_relaxed.owl oxidation reduction|oxidoreductase process https://github.com/geneontology/go-ontology/issues/20250 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0075207 biolink:NamedThing obsolete negative regulation by host of symbiont cAMP-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of cAMP-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by host of symbiont cAMP-mediated signaling The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0075020 biolink:NamedThing obsolete calcium or calmodulin-mediated activation of appressorium formation OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont calcium or calmodulin-mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl Ca2+ or calmodulin-mediated activation of appressorium formation|Ca++ or calmodulin-mediated activation of appressorium formation This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0030814 biolink:NamedThing obsolete regulation of cAMP metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). tmpzr1t_l9r_go_relaxed.owl regulation of adenosine 3',5'-cyclophosphate metabolism|regulation of cyclic AMP metabolism|regulation of 3',5' cAMP metabolic process|regulation of cyclic AMP metabolic process|regulation of 3',5'-cAMP metabolic process|regulation of 3',5' cAMP metabolism|regulation of cAMP metabolism|regulation of 3',5'-cAMP metabolism|regulation of adenosine 3',5'-cyclophosphate metabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0018337 biolink:NamedThing obsolete enzyme active site formation via L-2',4',5'-topaquinone OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via L-2',4',5'-topaquinone This term was made obsolete because this process does not occur: the modification occurs before it can be an active site. True biological_process owl:Class GO:0009490 biolink:NamedThing obsolete mononuclear iron electron carrier OBSOLETE. A mononuclear iron entity that serves as an electron acceptor and electron donor in an electron transport system. tmpzr1t_l9r_go_relaxed.owl mononuclear iron electron carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0018324 biolink:NamedThing obsolete enzyme active site formation via L-cysteine sulfenic acid OBSOLETE. The oxidation of peptidyl-cysteine to form peptidyl-L-cysteine sulfenic acid, found in the active site of NADH peroxidase, nitrile hydratase, and peptide methionine sulfoxide reductase. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via L-cysteine sulphenic acid https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0205 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:10964927 and PMID:9587003. True biological_process owl:Class GO:0097469 biolink:NamedThing obsolete cyclin-dependent protein tyrosine kinase activity OBSOLETE. Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. This reaction requires the binding of a regulatory cyclin subunit. tmpzr1t_l9r_go_relaxed.owl cyclin-dependent protein tyrosine kinase activity This term was made obsolete because it was added in error; the specific activity it refers to has never been observed. pr 2013-02-19T12:42:11Z True molecular_function owl:Class GO:0008129 biolink:NamedThing obsolete actinidain activity OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity for peptide bonds, with preference for a residue bearing a large hydrophobic side chain at the P2 position. Does not accept Val at P1'. tmpzr1t_l9r_go_relaxed.owl proteinase A2 of actinidia chinensis|actinidia anionic protease activity|actinidin activity|actinidain activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0006496 biolink:NamedThing obsolete protein amino acid terminal N-glycosylation OBSOLETE. The glycosylation of a nitrogen atom of a free alpha amino terminal of a peptide. tmpzr1t_l9r_go_relaxed.owl protein amino acid terminal N-glycosylation This term was made obsolete because the term name is ambiguous. GO:0006487|GO:0035629 True biological_process owl:Class GO:0004258 biolink:NamedThing obsolete vacuolar carboxypeptidase Y OBSOLETE. Catalysis of the release of a C-terminal amino acid with a broad specificity. tmpzr1t_l9r_go_relaxed.owl vacuolar carboxypeptidase Y This term was made obsolete because it contains both component and function information. GO:0004185|GO:0005773 True molecular_function owl:Class GO:1990279 biolink:NamedThing obsolete negative regulation of MBF transcription factor activity OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor MBF. tmpzr1t_l9r_go_relaxed.owl negative regulation of MBF transcription factor activity This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-01-29T14:46:52Z True biological_process owl:Class GO:0072463 biolink:NamedThing obsolete detection of stimulus involved in meiotic spindle assembly checkpoint OBSOLETE. The series of events in which information about whether spindle is correctly assembled and chromosomes are attached to the spindle is received and converted into a molecular signal, contributing to a meiotic spindle assembly checkpoint. tmpzr1t_l9r_go_relaxed.owl meiotic spindle assembly checkpoint sensor mechanism|sensing involved in meiotic spindle assembly checkpoint|meiotic spindle assembly checkpoint sensor process https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T11:37:41Z True biological_process owl:Class GO:0052476 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont MAP kinase-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont mitogen-activated protein kinase-mediated signal transduction pathway|negative regulation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway|suppression by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway|negative regulation by organism of defense-related symbiont MAPK-mediated signal transduction pathway This term was made obsolete because it does not represent a valid biological process that occurs in nature. True biological_process owl:Class GO:0000258 biolink:NamedThing obsolete isoleucine/valine:sodium symporter activity OBSOLETE. Catalysis of the reaction: (isoleucine or valine)(out) + Na+(out) = (isoleucine or valine)(in) + Na+(in). tmpzr1t_l9r_go_relaxed.owl isoleucine/valine:sodium symporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015188|GO:0005304|GO:0005283 True molecular_function owl:Class GO:1990347 biolink:NamedThing obsolete G*/A mismatch-specific adenine-DNA glycosylase activity OBSOLETE. Catalysis of the removal of adenine misinserted into nascent strand opposite 8-oxoG in the template by adenine DNA glycosylase activity. The reaction leaves an apyrimidinic (AP) site. tmpzr1t_l9r_go_relaxed.owl G*/A mismatch-specific adenine-DNA glycosylase activity This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-03-25T10:14:37Z True molecular_function owl:Class GO:1900414 biolink:NamedThing obsolete regulation of cytokinesis by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cytokinesis. tmpzr1t_l9r_go_relaxed.owl mah 2012-04-20T03:42:13Z True biological_process owl:Class GO:0005645 biolink:NamedThing obsolete RAN-binding protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl RAN-binding protein GO:0031267 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0003966 biolink:NamedThing obsolete RNA-directed DNA polymerase, transposon encoded OBSOLETE. Catalysis of RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time; cannot initiate a chain de novo. tmpzr1t_l9r_go_relaxed.owl RNA-directed DNA polymerase, transposon encoded GO:0003964 This term was made obsolete because it does not represent a function distinct from its parent term 'RNA-directed DNA polymerase'. True molecular_function owl:Class preceded_by biolink:NamedThing preceded by tmpzr1t_l9r_go_relaxed.owl BFO:0000062 external preceded_by GO:0034187 biolink:NamedThing obsolete apolipoprotein E binding OBSOLETE. Binding to apolipoprotein E. tmpzr1t_l9r_go_relaxed.owl apolipoprotein E binding GO:0034185 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0005710 biolink:NamedThing obsolete metaphase chromosome OBSOLETE. A chromosome found in the cell during metaphase. Typically, sister chromatids are held together at their centromeres and chromosomes are covered with a large number of molecules, including ribonucleoproteins. tmpzr1t_l9r_go_relaxed.owl metaphase chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0000793|GO:0000794 True cellular_component owl:Class GO:1990105 biolink:NamedThing obsolete regulation of voltage-gated potassium channel activity OBSOLETE. Any process that modulates the frequency, rate or extent of voltage-gated potassium channel activity. tmpzr1t_l9r_go_relaxed.owl regulation of voltage-gated potassium channel activity This term was obsoleted at the TermGenie Gatekeeper stage. sl 2013-05-21T15:12:06Z True biological_process owl:Class GO:1905104 biolink:NamedThing obsolete response to ouabain OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ouabain stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-04-04T19:08:07Z True biological_process owl:Class GO:0072317 biolink:NamedThing obsolete glucan endo-1,3-beta-D-glucosidase activity involved in ascospore release from ascus OBSOLETE. Catalysis of the hydrolysis of 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans that contributes to the release of ascospores from the ascus. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15204 This term was obsoleted because it should be captured as a GO-CAM model. mah 2010-10-25T05:46:13Z True molecular_function owl:Class GO:0004234 biolink:NamedThing obsolete macrophage elastase activity OBSOLETE. Catalysis of the hydrolysis of soluble and insoluble elastin. Specific cleavages are also produced at Ala14-Leu15 and Tyr16-Leu17 in the B chain of insulin. tmpzr1t_l9r_go_relaxed.owl macrophage elastase activity|human macrophage metalloelastase (HME)|matrix metalloproteinase 12 activity|metalloesterase activity|MMP-12|metalloelastase activity EC:3.4.24.65|MetaCyc:3.4.24.65-RXN This term was made obsolete because it represents a gene product. GO:0004222|GO:0004175 True molecular_function owl:Class GO:0052432 biolink:NamedThing obsolete modulation by organism of symbiont apoptosis OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by apoptosis. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont apoptosis|modulation by organism of symbiont apoptotic programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009296 biolink:NamedThing obsolete flagellum assembly OBSOLETE. The assembly of a flagellum. In bacteria, this is a whiplike motility appendage present on the surface of some species; in eukaryotes, flagella are threadlike protoplasmic extensions used to propel flagellates and sperm. Flagella are composed of flagellin and have the same basic structure as cilia but are longer in proportion to the cell and present in much smaller numbers. tmpzr1t_l9r_go_relaxed.owl flagellum assembly|flagella biogenesis|flagellum biogenesis|flagella assembly GO:0060271|GO:0044780 True biological_process owl:Class GO:1903164 biolink:NamedThing obsolete succinate transmembrane transporter activity involved in succinate import into cell OBSOLETE. Any succinate transmembrane transporter activity that is involved in succinate import into cell. tmpzr1t_l9r_go_relaxed.owl dicarboxylate (succinate/fumarate/malate) antiporter activity involved in succinate import into cell|succinate transmembrane transporter activity involved in succinate import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:55Z True molecular_function owl:Class GO:0030616 biolink:NamedThing obsolete transforming growth factor beta receptor, common-partner cytoplasmic mediator activity OBSOLETE. A TGF-beta cytoplasmic mediator that forms a complex with a phosphorylated pathway-specific mediator. The heterocomplex translocates to the nucleus to regulate transcription. tmpzr1t_l9r_go_relaxed.owl common mediator SMAD protein|TGF-beta receptor, common-partner cytoplasmic mediator activity|common partner SMAD protein|TGFbeta receptor, common-partner cytoplasmic mediator activity|common-partner SMAD protein|common-mediator SMAD protein|co-SMAD protein https://github.com/geneontology/go-ontology/issues/16202 This term was obsoleted because it is redundant with other terms. GO:0000981|GO:0003712 True molecular_function owl:Class GO:0061813 biolink:NamedThing obsolete ARID domain binding OBSOLETE. Binding to a ARID domain. The AT-rich interaction domain (ARID) is an ~100-amino acid DNA-binding module found in a large number of eukaryotic transcription factors. tmpzr1t_l9r_go_relaxed.owl dph 2016-11-11T13:57:55Z True molecular_function owl:Class GO:0005906 biolink:NamedThing obsolete clathrin adaptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl clathrin adaptor|adaptin GO:0030119 This term was made obsolete because it was positioned incorrectly, so the replacement term has a definition different from what this term appeared to mean. True cellular_component owl:Class GO:1900460 biolink:NamedThing obsolete negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of invasive growth in response to glucose limitation by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of colony morphology by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T06:09:17Z True biological_process owl:Class GO:0008717 biolink:NamedThing obsolete D-alanyl-D-alanine endopeptidase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl penicillin-binding protein 8|D-alanyl-D-alanine endopeptidase activity|penicillin-binding protein 7 GO:0004175 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1905877 biolink:NamedThing obsolete invadopodium assembly OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form an invadopodium. tmpzr1t_l9r_go_relaxed.owl invadopodium formation This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-01-27T20:44:07Z True biological_process owl:Class GO:0052257 biolink:NamedThing obsolete pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism activates, maintains or increases the frequency, rate or extent of the innate immune response of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl MAMP-dependent induction of innate immunity of other organism|general elicitor dependent induction of innate immunity of other organism|PAMP dependent induction of innate immunity of other organism|MAMP dependent induction of innate immunity of other organism|pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction|PAMP-dependent induction of innate immunity of other organism|pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism during symbiotic interaction|general elicitor-dependent induction of innate immunity of other organism This term was obsoleted because it has been misused. GO:0052034|GO:0002221|GO:0002752 True biological_process owl:Class GO:0006815 biolink:NamedThing obsolete sodium/potassium transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl sodium/potassium transport This term was made obsolete because it is a composite term that represents two individual processes. GO:0006814|GO:0006813 True biological_process owl:Class GO:0004625 biolink:NamedThing obsolete calcium-dependent secreted phospholipase A2 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl calcium-dependent secreted phospholipase A2 activity This term was made obsolete because it represents component and function information. GO:0047498|GO:0005576 True molecular_function owl:Class GO:0039566 biolink:NamedThing obsolete suppression by virus of host STAT1 activity by tyrosine dephosphorylation of STAT1 OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT1 (signal transducer and activator of transcription-1) activity by the removal of phosphoric residues from STAT1-O-phospho-tyrosine to form STAT1-tyrosine. For example, the viral phosphatase VH1 dephosphorylates STAT1 to reverse STAT1 activation. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host STAT1 activity by peptidyl-tyrosine dephosphorylation of STAT1|viral tyrosine phosphatase activity involved in suppression of host STAT1 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:08:32Z True biological_process owl:Class GO:0007357 biolink:NamedThing obsolete positive regulation of central gap gene transcription OBSOLETE. The activation of genes encoding transcription factors in the central region of an insect embryo by a combination of maternal regulatory signals and interactions among themselves; exemplified by the activation of expression of the Drosophila Kruppel gene by the hunchback and bicoid gene products. tmpzr1t_l9r_go_relaxed.owl upregulation of central gap gene transcription|up-regulation of central gap gene transcription|activation of central gap gene transcription|up regulation of central gap gene transcription|activation of central gap gene|stimulation of central gap gene transcription This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:1990885 biolink:NamedThing obsolete protein serine/threonine kinase binding OBSOLETE. Binding to a protein serine/threonine kinase. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-10-28T20:40:57Z True molecular_function owl:Class GO:0018065 biolink:NamedThing obsolete protein-cofactor linkage OBSOLETE. The covalent attachment of a cofactor to a protein. tmpzr1t_l9r_go_relaxed.owl 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group protein modification processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0010702 biolink:NamedThing obsolete regulation of histolysis OBSOLETE. Any process that modulates the rate, frequency or extent of the breakdown of tissues; usually, if not always, accompanied by cell death. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants. GO:0008219|GO:0012501 True biological_process owl:Class GO:0019514 biolink:NamedThing obsolete lactose hydrolysis OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lactose hydrolysis This term was made obsolete because hydrolysis is a reaction. GO:0004565 True biological_process owl:Class GO:0005180 biolink:NamedThing obsolete peptide hormone OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peptide hormone This term was made obsolete because it describes a type of hormone rather than a molecular function. GO:0005179 True molecular_function owl:Class GO:0007123 biolink:NamedThing obsolete bud scar accumulation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bud scar accumulation This term was made obsolete because it is a phenotype rather than a biological process. GO:0000282 True biological_process owl:Class GO:0000263 biolink:NamedThing obsolete heterotrimeric G-protein GTPase, alpha-subunit OBSOLETE. Subunit of a heterotrimeric G-protein GTPase that contains the guanine nucleotide binding site and possesses GTPase activity. tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GTPase, alpha-subunit This term was made obsolete because it does not represent a molecular function. GO:0003924|GO:0005834 True molecular_function owl:Class GO:0004295 biolink:NamedThing obsolete trypsin activity OBSOLETE. Catalysis of the preferential cleavage of Arg-Xaa, Lys-Xaa. tmpzr1t_l9r_go_relaxed.owl trypure|cocoonase activity|beta-trypsin activity|pseudotrypsin|tryptar|sperm receptor hydrolase activity|tripcellim|alpha-trypsin activity|trypsin activity|parenzymol|parenzyme GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0001683 biolink:NamedThing obsolete axonemal dynein heavy chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl axonemal dynein heavy chain GO:0005858 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0009634 biolink:NamedThing obsolete heavy metal sensitivity/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl heavy metal sensitivity/resistance This term was made obsolete because 'sensitivity/resistance' implies a phenotype rather than a biological process. GO:0010038 True biological_process owl:Class GO:0016512 biolink:NamedThing obsolete endothelin-converting enzyme 1 activity OBSOLETE. Catalysis of the formation of endothelin 1 by cleavage of the Trp21-Val22 bond in the precursor. tmpzr1t_l9r_go_relaxed.owl ECE-1 activity|endothelin-converting enzyme 1 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1902574 biolink:NamedThing obsolete negative regulation of leucine import by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in negative regulation of leucine import. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. al 2013-12-11T09:43:23Z True biological_process owl:Class GO:0016171 biolink:NamedThing obsolete cell surface antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cell surface antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0052192 biolink:NamedThing obsolete movement in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of an organism or motile cell on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl locomotion in environment of other organism during symbiotic interaction|movement in environment of other organism during symbiotic interaction This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:1903065 biolink:NamedThing obsolete protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape OBSOLETE. Any protein localization to cell tip that is involved in positive regulation of establishment of cell polarity regulating cell shape. tmpzr1t_l9r_go_relaxed.owl protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape|protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape This term was obsoleted at the TermGenie Gatekeeper stage. vw 2014-05-28T15:29:27Z True biological_process owl:Class GO:0098663 biolink:NamedThing obsolete transmembrane transporter activity involved in import into cell OBSOLETE. Any transmembrane transporter activity that is involved in importing some substance into a cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14322 The reason for obsoletion is that this terms partly represents the process "import into cell". True molecular_function owl:Class GO:0071615 biolink:NamedThing obsolete oxidative deethylation OBSOLETE. The process of removing one or more ethyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20250 This term was obsoleted because it represents a molecular function. mah 2010-02-05T06:11:41Z True biological_process owl:Class GO:0048228 biolink:NamedThing obsolete actin cortical patch distribution OBSOLETE. Any process that establishes the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells. tmpzr1t_l9r_go_relaxed.owl actin cortical patch distribution This term was made obsolete because its definition is very similar to that of its parent term, actin cortical patch localization (GO:0051666), but somewhat unclear, and not similar enough to merge the terms. True biological_process owl:Class GO:0008462 biolink:NamedThing obsolete endopeptidase Clp activity OBSOLETE. Catalysis of the hydrolysis of proteins to small peptides in the presence of ATP and magnesium. Alpha-casein is the usual test substrate. In the absence of ATP, only oligopeptides shorter than five residues are cleaved, for example, succinyl-Leu-Tyr-NHMec which is cleaved at the Tyr-NHMec bond, and Leu-Tyr-Leu-Tyr-Trp which is cleaved at the second Leu-Typ bond (cleavage of the Tyr-Leu and Tyr-Trp bonds also occurs). tmpzr1t_l9r_go_relaxed.owl caseinolytic protease activity|endopeptidase Ti activity|ClpP|Clp protease|endopeptidase Clp activity|ATP-dependent Clp protease|protease Ti activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0047063 biolink:NamedThing obsolete L-ascorbate-cytochrome-b5 reductase activity OBSOLETE. Catalysis of the reaction: ferricytochrome B5 + ascorbate = ferrocytochrome B5 + monodehydroascorbate. tmpzr1t_l9r_go_relaxed.owl ascorbate-cytochrome b5 reductase activity|L-ascorbate:ferricytochrome-b5 oxidoreductase activity MetaCyc:1.10.2.1-RXN|RHEA:18677|EC:1.10.2.1 This term was obsoleted because the EC and RHEA it represented was obsoleted. True molecular_function owl:Class GO:0008181 biolink:NamedThing obsolete tumor suppressor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl tumor suppressor This term was made obsolete because it does not represent a true biological function, rather a pathology that occurs when a particular gene product is inactivated in some way. GO:0051726 True molecular_function owl:Class GO:0071430 biolink:NamedThing obsolete pre-miRNA-containing ribonucleoprotein complex export from nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex that contains pre-microRNA from the nucleus to the cytoplasm. tmpzr1t_l9r_go_relaxed.owl pre-microRNA-containing ribonucleoprotein complex nucleus export|pre-microRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm|pre-microRNA-containing ribonucleoprotein complex export from cell nucleus|pre-microRNA-containing RNP export from nucleus|pre-microRNA-containing ribonucleoprotein complex export from nucleus https://github.com/geneontology/go-ontology/issues/22246 This term has been obsoleted because it represents the transport of a carrier bound to its substrate. mah 2009-12-16T10:26:16Z True biological_process owl:Class GO:1900374 biolink:NamedThing obsolete positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of mating type switching. tmpzr1t_l9r_go_relaxed.owl up-regulation of mating type switching by regulation of transcription from RNA polymerase II promoter|up regulation of mating type switching by regulation of transcription from RNA polymerase II promoter|activation of mating type switching by regulation of transcription from RNA polymerase II promoter|stimulation of mating type switching by regulation of transcription from RNA polymerase II promoter|upregulation of mating type switching by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. krc 2012-04-17T12:39:56Z True biological_process owl:Class GO:0052446 biolink:NamedThing obsolete modulation by organism of defense-related symbiont cell wall thickening OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont cell wall thickening|modulation by organism of symbiont defensive cell wall thickening This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005395 biolink:NamedThing obsolete eye pigment precursor transporter activity OBSOLETE. Catalysis of the reaction: ATP + H2O + eye pigment precursor(in) = ADP + phosphate + eye pigment precursor(out). tmpzr1t_l9r_go_relaxed.owl This term has been obsoleted because eye pigment precursors are nucleotides and amino acids, and there are terms to annotate these functions. True molecular_function owl:Class GO:0034624 biolink:NamedThing obsolete DNA recombinase assembly involved in gene conversion at mating-type locus OBSOLETE. The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) into higher order oligomers on single-stranded DNA, involved in the conversion of the mating-type locus from one allele to another. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19999 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0016326 biolink:NamedThing obsolete kinesin motor activity OBSOLETE. The hydrolysis of ATP (and GTP) that drives the microtubular motor along microtubules. tmpzr1t_l9r_go_relaxed.owl kinesin motor activity GO:0003777 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0035951 biolink:NamedThing obsolete positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of oligopeptide transport by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of oligopeptide transport by stimulation of transcription from RNA polymerase II promoter|positive regulation of oligopeptide transport by upregulation of transcription from RNA polymerase II promoter|positive regulation of oligopeptide transport by up regulation of transcription from RNA polymerase II promoter|positive regulation of oligopeptide transport by activation of transcription from RNA polymerase II promoter|positive regulation of oligopeptide transport by positive regulation of transcription from Pol II promoter|positive regulation of oligopeptide transport by up-regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0045305 biolink:NamedThing obsolete regulator of establishment of competence for transformation activity OBSOLETE. Functions to either promote or inhibit the establishment of competence for transformation. tmpzr1t_l9r_go_relaxed.owl regulator of establishment of competence for transformation activity GO:0045304 This term was made obsolete because it does not represent a true function. True molecular_function owl:Class GO:0045099 biolink:NamedThing obsolete vimentin OBSOLETE. A type of intermediate filament. tmpzr1t_l9r_go_relaxed.owl vimentin GO:0045098 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0016271 biolink:NamedThing obsolete tissue death OBSOLETE. A permanent cessation of all vital functions of a tissue. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants. GO:0012501|GO:0008219 True biological_process owl:Class GO:0000195 biolink:NamedThing obsolete nuclear translocation of MAPK (pseudohyphal growth) OBSOLETE. Movement of a MAP kinase to the nucleus in the context of regulating pseudohyphal or invasive growth. tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK (pseudohyphal growth) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0052191 biolink:NamedThing obsolete positive regulation by symbiont of host phagocytosis OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl stimulation by symbiont of host phagocytosis|up-regulation by symbiont of host phagocytosis|upregulation by symbiont of host phagocytosis|activation by symbiont of host phagocytosis|up regulation by symbiont of host phagocytosis https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008436 biolink:NamedThing obsolete heterogeneous nuclear ribonucleoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl heterogeneous nuclear ribonucleoprotein|hnRNP GO:1990904 This term was made obsolete because it describes a cellular component rather than a molecular function. True molecular_function owl:Class GO:0033199 biolink:NamedThing obsolete inositol heptakisphosphate 4-kinase or 6-kinase activity OBSOLETE. Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 4,5-bisdiphosphoinositol-1D-myoinositol (1,2,3,6)tetrakisphosphate, and ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 5,6-bisdiphosphoinositol-1D-myoinositol (1,2,3,4)tetrakisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol heptakisphosphate 4-kinase or 6-kinase activity This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0000834|GO:0000833 True molecular_function owl:Class GO:0008225 biolink:NamedThing obsolete Gram-negative antibacterial peptide activity OBSOLETE. Inhibits the growth of, or directly kills, Gram-negative bacterial cells. tmpzr1t_l9r_go_relaxed.owl Gram-negative antibacterial peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0050829 True molecular_function owl:Class GO:0004213 biolink:NamedThing obsolete cathepsin B activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds with a broad specificity. Preferentially cleaves the terminal bond of -Arg-Arg-Xaa motifs in small molecule substrates (thus differing from cathepsin L). In addition to being an endopeptidase, shows peptidyl-dipeptidase activity, liberating C-terminal dipeptides. tmpzr1t_l9r_go_relaxed.owl cathepsin B1 activity|cathepsin B activity|cathepsin II GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051822 biolink:NamedThing obsolete dissemination or transmission of organism from other organism by vector involved in symbiotic interaction OBSOLETE. The movement of an organism from a second organism to another place in the environment by means of a vector, where the two organisms are in a symbiotic interaction. The first organism may also move to a different organism, and the vector organism is often an insect or an animal. tmpzr1t_l9r_go_relaxed.owl dissemination or transmission of organism from other organism by vector during symbiotic interaction This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont. True biological_process owl:Class GO:2000577 biolink:NamedThing obsolete regulation of microtubule motor activity, minus-end-directed OBSOLETE. Any process that modulates the frequency, rate or extent of ATP-dependent microtubule motor activity, minus-end-directed. tmpzr1t_l9r_go_relaxed.owl regulation of minus-end-directed microtubule motor activity|regulation of kinesin ATP phosphohydrolase (minus-end-directed)|regulation of ATP-dependent microtubule motor activity, minus-end-directed|regulation of minus-end-directed kinesin ATPase activity https://github.com/geneontology/go-ontology/issues/21626 This term was obsoleted because it represents a molecular function. GO:0140659 bf 2011-04-05T08:37:52Z True biological_process owl:Class GO:0043064 biolink:NamedThing obsolete flagellum organization OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a flagellum, a long thin projection from a cell, used in movement. tmpzr1t_l9r_go_relaxed.owl flagellum organization|flagellum organisation|flagellum organization and biogenesis This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:0044781|GO:0044782 True biological_process owl:Class GO:0044701 biolink:NamedThing obsolete response to stimulus by single organism OBSOLETE. A response to a stimulus that involves only one organism. tmpzr1t_l9r_go_relaxed.owl response to stimulus by single organism This term was made obsolete because we decided that all responses are single-organism. jl 2012-09-19T15:40:57Z True biological_process owl:Class GO:0005323 biolink:NamedThing obsolete very-low-density lipoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl VLDL|very-low-density lipoprotein GO:0005319 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:0044043 biolink:NamedThing obsolete multi-organism glucan metabolic process OBSOLETE. The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, involving more than one organism. tmpzr1t_l9r_go_relaxed.owl multi-organism glucan metabolism This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0001011 biolink:NamedThing obsolete transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting OBSOLETE. Binding to a specific DNA sequence and recruiting RNA polymerase to the DNA in order to form the preinitiation complex (PIC). tmpzr1t_l9r_go_relaxed.owl sequence-specific DNA binding RNA polymerase recruiting transcription factor activity This term was obsoleted because it was not clearly defined and usage has been inconsistent. GO:0140223 krc 2010-08-18T06:49:16Z True molecular_function owl:Class GO:0015482 biolink:NamedThing obsolete voltage-gated anion channel porin activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl voltage-gated anion channel porin activity|voltage-dependent anion channel porin activity This term was made obsolete because it wrongly combines voltage-gated anion channel activity and porin activity. True molecular_function owl:Class GO:0075171 biolink:NamedThing obsolete regulation of MAP kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its MAP kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont MAP kinase-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1901639 biolink:NamedThing obsolete XDP catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of XDP. tmpzr1t_l9r_go_relaxed.owl XDP catabolism|XDP degradation|XDP breakdown https://github.com/geneontology/go-ontology/issues/20954 This term was obsoleted because there is no evidence that this reaction exist in vivo. tb 2012-11-15T22:56:26Z True biological_process owl:Class GO:0015981 biolink:NamedThing obsolete passive proton transport, down the electrochemical gradient OBSOLETE. The passive movement of protons from areas of high proton concentration and electrical potential to areas where concentration and electrical potential are low. tmpzr1t_l9r_go_relaxed.owl passive proton transport, down the electrochemical gradient This term was made obsolete because it represents a passive process which occurs without the aid of gene products. GO:1902600 True biological_process owl:Class GO:0010670 biolink:NamedThing obsolete positive regulation of oxygen and reactive oxygen species metabolic process OBSOLETE. Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH). tmpzr1t_l9r_go_relaxed.owl positive regulation of oxygen and reactive oxygen species metabolic process This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together. GO:2000379|GO:2000376 True biological_process owl:Class GO:0046234 biolink:NamedThing obsolete fluorene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents. tmpzr1t_l9r_go_relaxed.owl fluorene anabolism|fluorene synthesis|fluorene biosynthetic process|fluorene formation|fluorene biosynthesis This term was made obsolete because fluorene is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0051370 biolink:NamedThing obsolete ZASP binding OBSOLETE. Binding to Z-band alternatively spliced PDZ motif protein (ZASP). ZASP is a Z-band protein specifically expressed in heart and skeletal muscle. This protein contains N-terminal PDZ domain and C-terminal LIM domain. tmpzr1t_l9r_go_relaxed.owl Z-band alternatively spliced PDZ-motif protein binding|ZASP binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class RO:0002296 biolink:NamedThing results in development of tmpzr1t_l9r_go_relaxed.owl RO:0002296 external results_in_development_of GO:0001305 biolink:NamedThing obsolete progressive alteration of chromatin involved in chronological cell aging OBSOLETE. A process that results in changes in chromatin structure contributing to chronological cell aging, occurring in non-dividing cells. tmpzr1t_l9r_go_relaxed.owl progressive alteration of chromatin during chronological cell aging|progressive alteration of chromatin during chronological cell ageing https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0090398|GO:0044838 True biological_process owl:Class GO:0004702 biolink:NamedThing obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. tmpzr1t_l9r_go_relaxed.owl receptor signalling protein serine/threonine kinase activity|receptor signaling protein serine/threonine kinase activity https://github.com/geneontology/go-ontology/issues/14232 EC:2.7.11.- This term was obsoleted because it was not clearly defined. True molecular_function owl:Class GO:0000020 biolink:NamedThing obsolete negative regulation of recombination within rDNA repeats OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA. tmpzr1t_l9r_go_relaxed.owl negative regulation of recombination within rDNA repeats This term was made obsolete because it describes a substrate-specific process. GO:0045950 True biological_process owl:Class GO:0017175 biolink:NamedThing obsolete IMP-GMP specific 5'-nucleotidase activity OBSOLETE. Catalysis of the conversion of 5'-ribonucleotides to ribonucleosides and phosphate, with specificity for IMP or GMP 5'-ribonucleotides and H2O as a nucleophile. tmpzr1t_l9r_go_relaxed.owl IMP-GMP specific 5'-nucleotidase activity This term was made obsolete because it represents a gene product with two different activities. GO:0050484 True molecular_function owl:Class GO:0016218 biolink:NamedThing obsolete polyketide synthase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl polyketide synthase activity GO:0030639 This term was made obsolete because the activity it describes does not exist, and the gene product with the name 'polyketide synthase' has multiple functional domains, so using the name to describe a single function would be misleading. GO:0034081 True molecular_function owl:Class GO:0015984 biolink:NamedThing obsolete uniport OBSOLETE. The process of noncoupled solute translocation or facilitated diffusion. tmpzr1t_l9r_go_relaxed.owl uniport GO:0015292 This term was made obsolete because it represents a molecular function rather than a biological process. True biological_process owl:Class GO:0052237 biolink:NamedThing obsolete aerotaxis in other organism involved in symbiotic interaction OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl aerotaxis in other organism during symbiotic interaction|aerotaxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0015305 biolink:NamedThing obsolete lactose, galactose:proton symporter activity OBSOLETE. Catalysis of the reaction: (lactose or galactose)(out) + H+(out) = (lactose or galactose)(in) + H+(in). tmpzr1t_l9r_go_relaxed.owl lactose, galactose:hydrogen symporter activity|lactose,galactose:proton symporter activity|lactose, galactose:proton symporter activity This term was made obsolete because it represents two molecular functions. GO:0015528|GO:0015517 True molecular_function owl:Class GO:0006981 biolink:NamedThing obsolete activation of SoxR protein OBSOLETE. The conversion of the SoxR transcription factor to its active (oxidized) form. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it was too specific with respect to a single gene product. True biological_process owl:Class GO:0052362 biolink:NamedThing obsolete catabolism by host of symbiont protein OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of protein macromolecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0001132 biolink:NamedThing obsolete RNA polymerase II transcription factor activity, TBP-class protein binding OBSOLETE. Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TRF protein binding RNA polymerase II transcription factor activity|TATA-binding protein binding RNA polymerase II transcription factor activity|TBP-class protein binding RNA polymerase II transcription factor activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. krc 2011-01-20T04:15:44Z True molecular_function owl:Class GO:1901487 biolink:NamedThing obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels OBSOLETE. Positive regulation of transcription factor catabolism in response to increased oxygen levels, which results in negative regulation of the SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl negative regulation of SREBP-mediated signaling pathway in response to increased oxygen levels by positive regulation of transcription factor catabolic process|negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation, in response to elevated oxygen|negative regulation of SREBP signaling by acceleration of SREBP degradation, in response to increased oxygen levels|negative regulation of SREBP-mediated signaling pathway in presence of oxygen by positive regulation of transcription factor catabolic process|negative regulation of SREBP signaling by positive regulation of transcription factor catabolism in response to increased oxygen levels https://github.com/geneontology/go-ontology/issues/14544 The reason for obsoletion is that this is better captured in a GO-CAM model. bf 2012-10-09T08:23:33Z True biological_process owl:Class GO:0075338 biolink:NamedThing obsolete modulation of growth or development of symbiont during interaction with host OBSOLETE. Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of growth or development of symbiont during interaction with host This term was made obsolete because it contained a conjunction (or). GO:0044145 True biological_process owl:Class GO:0052462 biolink:NamedThing obsolete modulation by host of symbiont phagocytosis OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:1900472 biolink:NamedThing obsolete positive regulation of phosphatidylcholine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of phosphatidylcholine biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of phosphatidylcholine anabolism by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylcholine biosynthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylcholine synthesis by positive regulation of transcription from RNA polymerase II promoter|positive regulation of phosphatidylcholine formation by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T08:13:36Z True biological_process owl:Class GO:0052238 biolink:NamedThing obsolete aerotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl aerotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0015641 biolink:NamedThing obsolete lipoprotein toxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl lipoprotein toxin This term was made obsolete because it represents a gene product. GO:0090729 True molecular_function owl:Class GO:0098766 biolink:NamedThing obsolete meiosis I M phase OBSOLETE. M phase during meiosis I. tmpzr1t_l9r_go_relaxed.owl Obsoleted because added in error. GO:0098762 True biological_process owl:Class GO:0052465 biolink:NamedThing obsolete modulation by organism of defense-related symbiont reactive oxygen species production OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the production of reactive oxygen species as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont reactive oxygen species production|modulation by organism of defense-related symbiont oxidative burst|modulation by organism of defense-related symbiont reactive oxygen intermediate production|modulation by organism of defense-related symbiont active oxygen species production|modulation by organism of defense-related symbiont AOS production|modulation by organism of defense-related symbiont metabolic burst|modulation by organism of defense-related symbiont reactive oxidative species production|modulation by organism of defense-related symbiont ROI production|modulation by organism of defense-related symbiont respiratory burst|modulation by organism of defense-related symbiont ROS production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0016626 biolink:NamedThing obsolete oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an acceptor other than NAD, NADP, oxygen, an iron-sulfur protein, disulphide or a cytochrome. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016903 True molecular_function owl:Class GO:0090401 biolink:NamedThing obsolete viral-induced premature senescence OBSOLETE. A cellular senescence process associated with the dismantling of a cell as a response to viral infection. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is was not clearly defined. There is nothing in the literature that mentions this process; there are papers that mention viral proteins overcoming premature senescence, for example, PMID:22326283. tb 2011-01-05T02:37:57Z True biological_process owl:Class GO:0061416 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to salt stress OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0071472 dph 2012-01-23T12:56:36Z True biological_process owl:Class GO:0006845 biolink:NamedThing obsolete mitochondrial aspartate/glutamate transport OBSOLETE. The directed movement of aspartate and glutamate into, out of or within a mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial aspartate/glutamate transport This term was made obsolete because it represents a function rather than a process. GO:0015810|GO:0015813|GO:0006839 True biological_process owl:Class GO:0005156 biolink:NamedThing obsolete epidermal growth factor receptor inhibiting ligand activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl EGFR inhibiting ligand activity|epidermal growth factor receptor inhibiting ligand activity|EGF receptor inhibiting ligand activity GO:0005154 This term was made obsolete because it represents both a biological process and a molecular function. GO:0007175|GO:0030293 True molecular_function owl:Class GO:0072361 biolink:NamedThing obsolete regulation of glycolytic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of glycolysis by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T02:57:18Z True biological_process owl:Class GO:0042971 biolink:NamedThing obsolete lactone transmembrane transporter activity OBSOLETE. Enables the transfer of lactone from one side of a membrane to the other. A lactone is a cyclic ester of a hydroxy carboxylic acid, containing a 1-oxacycloalkan-2-one structure, or an analogue having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence for a specific lactone transporter. True molecular_function owl:Class GO:0007003 biolink:NamedThing obsolete telomere binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl telomere binding GO:0042162 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0100042 biolink:NamedThing obsolete negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates pseudohyphal growth. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:1990436 biolink:NamedThing obsolete MAPK cascade involved in oxidative stress signaling pathway OBSOLETE. A series of molecular signals in which a MAP kinase cascade activated by oxidative stress relays one or more of the signals, MAP kinase cascades involve at least three protein kinase activities and culminate in the phosphorylation and activation of a MAP kinase. Just FYI in pombe the osmotic stress and oxidative stress MAPK cascade involve many of the same proteins, but the pathways are slightly different, therefore Im req this term. tmpzr1t_l9r_go_relaxed.owl MAPK cascade involved in oxidative stress signaling pathway This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-07-31T10:10:38Z True biological_process owl:Class GO:0021867 biolink:NamedThing obsolete neuron-producing asymmetric radial glial cell division in forebrain OBSOLETE. The unequal mitotic division of a radial glial cell in the forebrain that gives rise to a radial glial cell and a post-mitotic neuronal progenitor. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:1990979 biolink:NamedThing obsolete copper ion transport across blood-brain barrier OBSOLETE. The directed movement of copper ions passing through the blood-brain barrier. tmpzr1t_l9r_go_relaxed.owl copper ion transport across BBB This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-08-17T21:09:08Z True biological_process owl:Class GO:0085004 biolink:NamedThing obsolete interaction with host via secreted substance released from haustorium OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the haustorium, a projection from a cell or tissue that penetrates the host's cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T02:58:39Z True biological_process owl:Class GO:0018988 biolink:NamedThing obsolete molting cycle, protein-based cuticle OBSOLETE. The periodic shedding of part or all of a protein-based cuticle, which is then replaced by a new protein-based cuticle. A cuticle is the outer layer of an animal which acts to prevent water loss. tmpzr1t_l9r_go_relaxed.owl protein-based cuticle molting cycle This term was made obsolete because 'protein-based cuticle' is an unnecessary grouping term. GO:0018996|GO:0007591 True biological_process owl:Class GO:0061506 biolink:NamedThing obsolete DNA topoisomerase type II (ATP-independent) activity OBSOLETE. Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is not coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence that this function exists. There are no known type II topoisomerase enzymes that are ATP-independent; as far as we know, ALL type II topoisomerase enzymes utilize hydrolysis of ATP. dph 2013-01-23T10:41:58Z True molecular_function owl:Class GO:0015339 biolink:NamedThing obsolete cobalt, zinc uptake permease activity OBSOLETE. Catalysis of the reaction: (Zn2+ or Co2+)(out) = (Zn2+ or Co2+)(in). The activity is driven by proton motive force, possibly by proton symport. tmpzr1t_l9r_go_relaxed.owl cobalt, zinc uptake permease activity This term was made obsolete because it represents more than one molecular function. GO:0015087|GO:0005385 True molecular_function owl:Class GO:1905250 biolink:NamedThing obsolete positive regulation of memory OBSOLETE. Any process that activates or increases the frequency, rate or extent of memory. tmpzr1t_l9r_go_relaxed.owl enhancement of memory This term was obsoleted at the TermGenie Gatekeeper stage. ha 2016-06-09T13:54:53Z True biological_process owl:Class GO:0017074 biolink:NamedThing obsolete procollagen N-endopeptidase activity OBSOLETE. Catalysis of the cleavage of the N-propeptide of collagen chain alpha-1(I) at Pro-Gln and of alpha-1(II) and alpha-2(I) chains at Ala-Gln. tmpzr1t_l9r_go_relaxed.owl type I/II procollagen N-proteinase activity|procollagen N-proteinase activity|procollagen N-terminal proteinase activity|type III procollagen|aminoterminal procollagen peptidase activity|aminoprocollagen peptidase activity|procollagen N-endopeptidase activity|procollagen aminoterminal protease activity|procollagen N-terminal peptidase activity|procollagen aminopeptidase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0007559 biolink:NamedThing obsolete histolysis OBSOLETE. The breakdown of tissues; usually, if not always, accompanied by cell death, followed by the complete dissolution of dead tissue. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Histolysis This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants. GO:0008219|GO:0012501 True biological_process owl:Class GO:1990857 biolink:NamedThing obsolete APC-Fzr1/Mfr1 complex OBSOLETE. An anaphase promoting complex bound to an activator in the Fzr1 (human)/Mfr1 (pombe) family. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is too fine-grained for GO. GO:0005680 al 2015-09-22T13:29:11Z True cellular_component owl:Class GO:1990493 biolink:NamedThing obsolete cyclin H-CDK7 complex OBSOLETE. A protein complex consisting of cyclin H and cyclin-dependent kinase 7 (CDK7). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner. tmpzr1t_l9r_go_relaxed.owl cyclin H-CDK7 complex This term was made obsolete because it was added in error. al 2014-09-24T10:08:44Z True cellular_component owl:Class GO:0085000 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type V secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type V secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:08:54Z True biological_process owl:Class GO:0015062 biolink:NamedThing obsolete violet-sensitive opsin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl violet-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0016021|GO:0007603|GO:0009881|GO:0016918|GO:0046876|GO:0009588 True molecular_function owl:Class GO:0006162 biolink:NamedThing obsolete purine/pyrimidine nucleoside diphosphate reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl purine/pyrimidine nucleoside diphosphate reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0004748 True biological_process owl:Class GO:0019846 biolink:NamedThing obsolete enterotoxin activity OBSOLETE. Acts as to cause injury to the intestinal mucosa of other living organisms. tmpzr1t_l9r_go_relaxed.owl enterotoxin activity This term was made obsolete because it represents a class of gene products. GO:0090729 True molecular_function owl:Class GO:0046297 biolink:NamedThing obsolete 2,4-dichlorobenzoate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs). tmpzr1t_l9r_go_relaxed.owl 2,4-dichlorobenzoate anabolism|2,4-dichlorobenzoate synthesis|2,4-dichlorobenzoate biosynthetic process|2,4-dichlorobenzoate formation|2,4-dichlorobenzoate biosynthesis GO:0018898 This term was made obsolete because 2,4-dichlorobenzoate is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0006247 biolink:NamedThing obsolete TTP reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl TTP reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051064 True biological_process owl:Class GO:1900412 biolink:NamedThing obsolete regulation of histone methylation by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of histone methylation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. mah 2012-04-20T03:35:36Z True biological_process owl:Class GO:0080080 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075345 biolink:NamedThing obsolete modification by symbiont of host protein OBSOLETE. The covalent alteration by an organism of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0030802 biolink:NamedThing obsolete regulation of cyclic nucleotide biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of cyclic nucleotide biosynthesis|regulation of cyclic nucleotide formation|regulation of cyclic nucleotide anabolism|regulation of cyclic nucleotide synthesis The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class RO:0002336 biolink:NamedThing positively regulated by tmpzr1t_l9r_go_relaxed.owl RO:0002336 external positively_regulated_by GO:0052097 biolink:NamedThing obsolete interspecies quorum sensing OBSOLETE. The process in which a community of single-celled organisms of different species monitors population density by detecting the concentration of small diffusible signal molecules. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term was an unnecessary grouping term. True biological_process owl:Class GO:0005804 biolink:NamedThing obsolete secretory vesicle membrane OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl secretory vesicle membrane This term was made obsolete because its parent was made obsolete. GO:0030667|GO:0030658 True cellular_component owl:Class GO:0019794 biolink:NamedThing obsolete nonprotein amino acid metabolic process OBSOLETE. The chemical reactions and pathways involving any amino acid not found, or rarely found, in peptide linkage in proteins. tmpzr1t_l9r_go_relaxed.owl nonprotein amino acid metabolism|nonprotein amino acid metabolic process GO:0006520 This term was made obsolete because it was a grouping term that was poorly defined and did not provide a particularly meaningful grouping, since even for those amino acids commonly found in proteins, not all molecules necessarily end up incorporated into proteins. The term also violated the principle of positivity. True biological_process owl:Class GO:0071437 biolink:NamedThing obsolete invadopodium OBSOLETE. A cell projection that emerges from the ECM-facing surface of a cell, is enriched in actin and associated cytoskeletal proteins, and displays localized proteolytic activity toward the substrate. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. mah 2009-12-16T02:19:58Z True cellular_component owl:Class GO:0051193 biolink:NamedThing obsolete regulation of cofactor metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a cofactor. tmpzr1t_l9r_go_relaxed.owl regulation of cofactor metabolism 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0015461 biolink:NamedThing obsolete endosomal oligosaccharide transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl endosomal oligosaccharide transporter This term was made obsolete because it contains both component and function information. GO:0015157|GO:0005768 True molecular_function owl:Class GO:1904163 biolink:NamedThing obsolete regulation of triglyceride homeostasis OBSOLETE. Any process that modulates the frequency, rate or extent of triglyceride homeostasis. tmpzr1t_l9r_go_relaxed.owl regulation of triacylglycerol homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. rph 2015-04-22T11:04:43Z True biological_process owl:Class GO:1905929 biolink:NamedThing obsolete positive regulation of invadopodium disassembly OBSOLETE. Any process that activates or increases the frequency, rate or extent of invadopodium disassembly. tmpzr1t_l9r_go_relaxed.owl upregulation of invadopodium disassembly|up-regulation of invadopodium disassembly|activation of invadopodium disassembly|up regulation of invadopodium disassembly This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:39:14Z True biological_process owl:Class GO:0008975 biolink:NamedThing obsolete pitrilysin activity OBSOLETE. Catalysis of the preferential cleavage of Tyr16-Leu17 and Phe25-Tyr26 bonds of oxidized insulin B chain. Also acts on other substrates of Molecular weight less than 7 kDa such as insulin and glucagon. tmpzr1t_l9r_go_relaxed.owl PTR|Escherichia coli protease III|protease Pi activity|proteinase Pi|protease III activity|Escherichia coli metalloproteinase Pi|pitrilysin activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0044035 biolink:NamedThing obsolete multi-organism catabolic process OBSOLETE. A catabolic process - chemical reactions and pathways resulting in the breakdown of substances - which involves more than one organism. tmpzr1t_l9r_go_relaxed.owl multi-organismal catabolic process|multi-organismal catabolism|multi-organism catabolism https://github.com/geneontology/go-ontology/issues/19769 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0098811 biolink:NamedThing obsolete transcriptional repressor activity, RNA polymerase II activating transcription factor binding OBSOLETE. Binding to an RNA polymerase II activating transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II activating transcription factor binding transcription repressor activity|RNA polymerase II transcription repressor activity|RNA polymerase II activating transcription factor binding transcription factor activity involved in negative regulation of transcription https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0001227 krc 2011-08-25T02:12:30Z True molecular_function owl:Class GO:0016644 biolink:NamedThing obsolete oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, an iron-sulfur protein, NAD, NADP or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016638 True molecular_function owl:Class GO:0008530 biolink:NamedThing obsolete exogenous peptide receptor activity OBSOLETE. Combining with an extracellular peptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl exogenous peptide receptor activity This term was made obsolete because it contains both component and function information. GO:0005576|GO:0001653 True molecular_function owl:Class GO:0001506 biolink:NamedThing obsolete neurotransmitter biosynthetic process and storage OBSOLETE. The chemical reactions and pathways resulting in the formation of neurotransmitters and the storage of the synthesized molecules. tmpzr1t_l9r_go_relaxed.owl neurotransmitter formation and storage|neurotransmitter biosynthetic process and storage|neurotransmitter synthesis and storage|neurotransmitter anabolism and storage This term was made obsolete because it is an amalgamation of its two children. GO:0042136|GO:0042137 True biological_process owl:Class GO:0044044 biolink:NamedThing obsolete interaction with host via substance in symbiont surface OBSOLETE. An interaction with the host organism mediated by a substance on the surface of the other (symbiont) organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that these terms conflate a process and the mechanism of secretion of the compound mediating the process. True biological_process owl:Class GO:0046195 biolink:NamedThing obsolete 4-nitrophenol biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-nitrophenol, a nitroaromatic compound which is used in the production of dyes, leather treatment agents, fungicides and as an intermediate in the production of the insecticide parathion. tmpzr1t_l9r_go_relaxed.owl 4-nitrophenol anabolism|4-nitrophenol formation|4-nitrophenol biosynthesis|4-nitrophenol synthesis|4-nitrophenol biosynthetic process GO:0018960 This term was made obsolete because 4-nitrophenol is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0075155 biolink:NamedThing obsolete negative regulation of transmembrane receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont transmembrane receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont transmembrane receptor-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0043498 biolink:NamedThing obsolete cell surface binding OBSOLETE. Binding to a component on the surface of a cell. tmpzr1t_l9r_go_relaxed.owl cell surface binding This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. GO:0007155|GO:0046812|GO:0009986|GO:0005102|GO:0003823 True molecular_function owl:Class GO:0003718 biolink:NamedThing obsolete RNA polymerase III transcription termination factor activity OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase III. tmpzr1t_l9r_go_relaxed.owl Pol III transcription termination factor activity|RNA polymerase III transcription termination factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006386 True molecular_function owl:Class GO:0016771 biolink:NamedThing obsolete transferase activity, transferring other nitrogenous groups OBSOLETE. Catalysis of the transfer of a nitrogenous group, other than amino, amidino or oxime, from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring other nitrogenous groups This term was made obsolete because it was an unnecessary grouping term. GO:0016769 True molecular_function owl:Class GO:0005551 biolink:NamedThing obsolete ubiquitin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it represents a gene product. GO:0031386|GO:0016567 True molecular_function owl:Class GO:0000061 biolink:NamedThing obsolete protein import into nucleus, substrate release OBSOLETE. A protein complex disassembly process that contributes to protein import into the nucleus, and that results in the dissociation of the cargo protein and the carrier (such as an importin alpha/beta heterodimer) from each other and from the nuclear pore complex. tmpzr1t_l9r_go_relaxed.owl protein transport from cytoplasm to nucleus, substrate release|protein substrate release during protein-nucleus import|protein-nucleus import, substrate release|protein substrate release during protein transport from cytoplasm to nucleus|protein substrate release during protein import into nucleus|protein import into cell nucleus, substrate release This term has been obsoleted because it represents a substep of the parent (GO:0006606 protein import into nucleus), has been incorrectly used. True biological_process owl:Class GO:0036425 biolink:NamedThing obsolete D-phosphoserine phosphatase activity OBSOLETE. Catalysis of the reaction: O-phospho-D-serine + H2O = L-serine + phosphate, on a free amino acid. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21638 This term was obsoleted because there is no evidence that this function exisis. This reaction corresponds to RHEA:24873 and KEGG_REACTION:R02853. GO:0036424 bf 2013-09-16T13:02:43Z True molecular_function owl:Class GO:0005734 biolink:NamedThing obsolete box C + D snoRNP protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl box C + D snoRNP protein This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:1900406 biolink:NamedThing obsolete regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T02:46:24Z True biological_process owl:Class GO:0061887 biolink:NamedThing obsolete reproduction of symbiont in host OBSOLETE. The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms, occurring within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a process and a component. dph 2017-06-01T18:07:47Z True biological_process owl:Class GO:0030405 biolink:NamedThing obsolete matrix metalloproteinase 19 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl MMP-19|matrix metalloproteinase 19 activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0007581 biolink:NamedThing obsolete age-dependent yeast cell size increase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl age-dependent yeast cell size increase This term was made obsolete because it does not describe a biological process. GO:0007571 True biological_process owl:Class GO:0097285 biolink:NamedThing obsolete cell-type specific apoptotic process OBSOLETE. Any apoptotic process in a specific cell type. tmpzr1t_l9r_go_relaxed.owl cell-type specific apoptosis This term was made obsolete because it was an unnecessary grouping term. GO:0006915 pr 2012-03-29T04:00:25Z True biological_process owl:Class GO:0034883 biolink:NamedThing obsolete isonicotinate reductase activity OBSOLETE. Catalysis of the reaction: isonicotinate + 2 H+ + 2 e- = 1,4-dihydroisonicotinate. tmpzr1t_l9r_go_relaxed.owl isonicotinate reductase activity This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. GO:0016627 True molecular_function owl:Class GO:0008132 biolink:NamedThing obsolete pancreatic elastase activity OBSOLETE. Catalysis of the hydrolysis of proteins, including elastin. tmpzr1t_l9r_go_relaxed.owl pancreatic elastase activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0085007 biolink:NamedThing obsolete interaction with host via secreted substance released from rhoptry OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the rhoptry, a large, club-shaped secretory organelle that forms part of the apical complex of an apicomplexan parasite. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was deprecated because it conflated the process in which a gene product is involved with the secreaton system by which it reaches its target. jl 2010-02-10T03:02:08Z True biological_process owl:Class GO:1990652 biolink:NamedThing obsolete positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of pyrimidine-containing compound salvage. tmpzr1t_l9r_go_relaxed.owl positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-02-23T11:25:51Z True biological_process owl:Class GO:0019026 biolink:NamedThing obsolete negative sense viral genome OBSOLETE. A single stranded RNA genome with the opposite nucleotide polarity as mRNA. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0045557 biolink:NamedThing obsolete TRAIL receptor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of the TRAIL (TNF-related apoptosis inducing ligand) receptor. tmpzr1t_l9r_go_relaxed.owl TRAIL receptor anabolism|TRAIL receptor formation|TRAIL receptor synthesis|TRAIL receptor biosynthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0045568 biolink:NamedThing obsolete positive regulation of TRAIL receptor 2 biosynthetic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 2. tmpzr1t_l9r_go_relaxed.owl up regulation of TRAIL receptor 2 biosynthetic process|positive regulation of TRAIL receptor 2 formation|positive regulation of TRAIL receptor 2 anabolism|positive regulation of TRAIL receptor 2 biosynthesis|activation of TRAIL receptor 2 biosynthetic process|positive regulation of TRAIL receptor 2 synthesis|up-regulation of TRAIL receptor 2 biosynthetic process|stimulation of TRAIL receptor 2 biosynthetic process|upregulation of TRAIL receptor 2 biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0030459 biolink:NamedThing obsolete inactivation of MAPK (mating sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0035897 biolink:NamedThing obsolete proteolysis in other organism OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the hydrolysis of proteins in another organism by cleavage of their peptide bonds. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. bf 2011-06-15T03:00:27Z True biological_process owl:Class GO:0005837 biolink:NamedThing obsolete 26S proteasome OBSOLETE. A large multisubunit protease found in the cytosol that recognizes, unfolds, and digests protein substrates that have been marked for degradation by the attachment of a ubiquitin group. Individual subcomplexes of the complete 26S proteasome are involved in these different tasks: the ATP-dependent 19S caps are believed to unfold substrates and feed them to the actual protease, the 20S proteasome. tmpzr1t_l9r_go_relaxed.owl 26S proteasome This term was made obsolete because its definition was inaccurate. GO:0000502 True cellular_component owl:Class GO:0000300 biolink:NamedThing obsolete peripheral to membrane of membrane fraction OBSOLETE. Peripheral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; can be extracted from membrane fraction with high concentrations of salt or high pH. tmpzr1t_l9r_go_relaxed.owl peripheral to membrane of membrane fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0019898 True cellular_component owl:Class GO:0008549 biolink:NamedThing obsolete dynamin GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. An enzyme that is involved in endocytosis and is instrumental in pinching off membrane vesicles. tmpzr1t_l9r_go_relaxed.owl dynamin GTPase activity|dynamine GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0006897 True molecular_function owl:Class GO:0004443 biolink:NamedThing obsolete inositol-1,4,-bisphosphate 4-phosphatase OBSOLETE. Catalysis of the reaction: D-myo-inositol 3,4-bisphosphate + H2O = D-myo-inositol 3-monophosphate + phosphate. tmpzr1t_l9r_go_relaxed.owl inositol-1,4,-bisphosphate 4-phosphatase GO:0016316 True molecular_function owl:Class GO:0009858 biolink:NamedThing obsolete compatible pollen-pistil interaction OBSOLETE. An interaction between a pollen grain and pistil that results in unimpeded growth of the pollen tube through the stigma and style. tmpzr1t_l9r_go_relaxed.owl compatible pollen-pistil interaction This term was made obsolete because it represents a phenotype. True biological_process owl:Class has_participant biolink:NamedThing has participant tmpzr1t_l9r_go_relaxed.owl RO:0000057 external has_participant GO:0016946 biolink:NamedThing obsolete cathepsin F activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Cleavage of substrates with Phe and Leu in P2. tmpzr1t_l9r_go_relaxed.owl cathepsin F activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0016343 biolink:NamedThing obsolete cytoskeletal anchoring activity OBSOLETE. The direct or indirect linkage of cytoskeletal filaments to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cytoskeletal anchoring activity This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0075191 biolink:NamedThing obsolete autophagy of host cells on or near symbiont surface OBSOLETE. The process in which the host cells digest parts of their own cytoplasm, occurring when the host is on or near its symbiont surface. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term did not represent any specific host/symbiont process. True biological_process owl:Class GO:0005707 biolink:NamedThing obsolete interphase chromosome OBSOLETE. A chromosome found in the cell during interphase of the cell cycle. Chromosomes are usually decondensed during interphase and each long DNA molecule in a chromosome is divided into a large number of discrete domains that are folded differently. tmpzr1t_l9r_go_relaxed.owl interphase chromosome This term was made obsolete because it is based on a temporal division of the cell cycle. GO:0005694 True cellular_component owl:Class GO:0100039 biolink:NamedThing obsolete regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates pyrimidine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0006184 biolink:NamedThing obsolete GTP catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. tmpzr1t_l9r_go_relaxed.owl GTP degradation|GTP hydrolysis|GTP breakdown|GTP catabolism The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0003924 True biological_process owl:Class GO:1904741 biolink:NamedThing obsolete positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of filamentous growth of a population of unicellular organisms in response to starvation. tmpzr1t_l9r_go_relaxed.owl positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by activation of transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by stimulation of transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by up-regulation of global transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter, global|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by upregulation of transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by activation of global transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of global transcription from Pol II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by up regulation of transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from Pol II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by stimulation of global transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by upregulation of global transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by up regulation of global transcription from RNA polymerase II promoter|positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by up-regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. tb 2015-10-15T21:40:43Z True biological_process owl:Class GO:0016865 biolink:NamedThing obsolete intramolecular oxidoreductase activity, other intramolecular oxidoreductases OBSOLETE. A grouping term for intramolecular oxidoreductases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl intramolecular oxidoreductase activity, other intramolecular oxidoreductases|intramolecular isomerase activity, other intramolecular oxidoreductases This term was made obsolete because it was an unnecessary grouping term. GO:0016860 True molecular_function owl:Class GO:0000456 biolink:NamedThing obsolete dimethylation involved in SSU-rRNA maturation OBSOLETE. Dimethylation of the N6 amino groups of two consecutive adenosine residues near the 3'-end of the SSU rRNA. This process has been conserved from bacteria to eukaryotes. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term can be captured as a GO-CAM model. True biological_process owl:Class GO:0001404 biolink:NamedThing obsolete invasive growth OBSOLETE. Growth of a pathogenic organism that results in penetration into cells or tissues of the host organism. This often (but not necessarily) includes a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. tmpzr1t_l9r_go_relaxed.owl invasive growth|tissue invasion This term was made obsolete because more appropriate terms were created. GO:0044409 True biological_process owl:Class GO:0061746 biolink:NamedThing obsolete single-stranded DNA-dependent GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate; this reaction requires the presence of single-stranded DNA, and it drives another reaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19078 This term was obsoleted because there is no evidence that this reaction occurs under physiological conditions. dph 2015-11-11T12:50:19Z True molecular_function owl:Class GO:0007515 biolink:NamedThing obsolete lymph gland development OBSOLETE. The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is a small bean-shaped organ made up of a loose meshwork of reticular tissue in which are enmeshed large numbers of lymphocytes, macrophages and accessory cells. Lymph glands are located along the lymphatic system. tmpzr1t_l9r_go_relaxed.owl lymph gland development This term was made obsolete because it was wrongly defined. GO:0048535|GO:0048542 True biological_process owl:Class GO:0100025 biolink:NamedThing obsolete negative regulation of cellular amino acid biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular amino acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0017149 biolink:NamedThing obsolete protein biosynthetic process inhibitor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protein formation inhibitor activity|protein biosynthetic process inhibitor activity|protein anabolism inhibitor activity|protein synthesis inhibitor activity GO:0017148 This term was made obsolete because it represents involvement in a biological process. True molecular_function owl:Class GO:0052244 biolink:NamedThing obsolete negative energy taxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism within a second organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative energy taxis in other organism during symbiotic interaction|negative energy taxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0004263 biolink:NamedThing obsolete chymotrypsin activity OBSOLETE. Catalysis of the preferential cleavage of Tyr-Xaa > Trp-Xaa > Phe-Xaa > Leu-Xaa. tmpzr1t_l9r_go_relaxed.owl avazyme|chymotrypsin B activity|enzeon|chymotrypsin activity|alpha-chymotrypsin activity|chymotrypsin A activity|quimotrase activity|chymar|alpha-chymar|alpha-chymotrypsin A|chymotrypsins A and B|chymotest|quimar|alpha-chymar ophth GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051672 biolink:NamedThing obsolete catabolism by organism of cell wall peptidoglycan in other organism OBSOLETE. The chemical reactions and pathways resulting in the breakdown of the cell wall peptidoglycans of another organism. tmpzr1t_l9r_go_relaxed.owl cell wall catabolic process in other organism|cell wall peptidoglycan catabolic process in another organism|cell wall catabolism in other organism|catabolism of cell wall peptidoglycans of other organism|catabolic process of cell wall peptidoglycans of other organism https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1905547 biolink:NamedThing obsolete regulation of subtelomeric heterochromatin assembly OBSOLETE. Any process that modulates the frequency, rate or extent of subtelomeric heterochromatin assembly. tmpzr1t_l9r_go_relaxed.owl regulation of telomeric heterochromatin assembly|regulation of telomeric heterochromatin formation https://github.com/geneontology/go-ontology/issues/19188|https://github.com/geneontology/go-ontology/issues/22027 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. nc 2016-10-12T11:14:00Z True biological_process owl:Class GO:0005678 biolink:NamedThing obsolete chromatin assembly complex OBSOLETE. Any protein complex that acts in the formation of nucleosomes or higher order chromatin structure. tmpzr1t_l9r_go_relaxed.owl nucleosome assembly complex|chromatin assembly complex This term was made obsolete because its definition no longer reflects and cannot be modified to be consistent with the current state of knowledge. GO:0031497 True cellular_component owl:Class GO:0018329 biolink:NamedThing obsolete enzyme active site formation via N6-(phospho-5'-adenosine)-L-lysine OBSOLETE. The transient adenylylation of lysine to form N6-(phospho-5'-adenosine)-L-lysine, found in the active site of DNA ligase and RNA ligase. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0227 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:4944632 and and PMID:3882425. GO:0003910 True biological_process owl:Class GO:0042891 biolink:NamedThing obsolete antibiotic transport OBSOLETE. The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/17082 The reason for obsoletion is that this term has been inconsistently used. For export of an antibiotic by the organism that synthesizes it, consider 'GO:0140115 ; export across plasma membrane'. For export of an antibiotic by the target organism, consider 'GO:1990961 ; xenobiotic detoxification by transmembrane export across the plasma membrane'. True biological_process owl:Class GO:1904946 biolink:NamedThing obsolete cellular response to cobalt(II) acetate OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt(II) acetate stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. mr 2016-02-02T16:48:00Z True biological_process owl:Class GO:0019719 biolink:NamedThing obsolete smooth microsome OBSOLETE. Vesicular particles formed from disrupted endoplasmic reticulum and plasma membranes without any adhering ribosomes. tmpzr1t_l9r_go_relaxed.owl smooth microsome This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005790 True cellular_component owl:Class GO:0052468 biolink:NamedThing obsolete modulation by organism of salicylic acid levels in symbiont OBSOLETE. The alteration by an organism of the levels of salicylic acid in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of salicylic acid levels in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0046908 biolink:NamedThing obsolete negative regulation of crystal formation OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the spontaneous (nonenzymatic) formation of crystals in a solution, for example, calcium oxalate crystals in urine. tmpzr1t_l9r_go_relaxed.owl negative regulation of crystal formation|negative regulation of mineralization GO:0050801 This term was made obsolete because a more appropriate term was created. True biological_process owl:Class GO:0003799 biolink:NamedThing obsolete antifungal peptide activity OBSOLETE. Inhibits the growth of, or directly kills, fungal cells. tmpzr1t_l9r_go_relaxed.owl antifungal peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0050832 True molecular_function owl:Class GO:0033663 biolink:NamedThing obsolete negative regulation by symbiont of host defense-related protein level OBSOLETE. Any process in which the symbiont reduces of the levels of defense-related proteins in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. True biological_process owl:Class GO:1990582 biolink:NamedThing obsolete intracellular membrane-bounded organelle binding OBSOLETE. The temporary binding of a protein or protein complex to the membrane of an intracellular membrane-bounded organelle. tmpzr1t_l9r_go_relaxed.owl intracellular membrane-enclosed organelle binding|intracellular membrane-bounded organelle binding This term was obsoleted at the TermGenie Gatekeeper stage. sl 2014-12-10T19:37:09Z True molecular_function owl:Class GO:0008575 biolink:NamedThing obsolete proteasome ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP for channel gating and polypeptide unfolding before proteolysis in the proteasome. Six ATPase subunits are present in the regulatory particle (RP) of 26S proteasome. tmpzr1t_l9r_go_relaxed.owl proteasome ATPase activity This term was made obsolete because it mentions a component term in the term text string. GO:0016887 True molecular_function owl:Class GO:0009500 biolink:NamedThing obsolete dicluster bacterial-type ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dicluster bacterial-type ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0100055 biolink:NamedThing obsolete positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0043962 biolink:NamedThing obsolete negative regulation by host of symbiont adenylate cyclase-mediated signal transduction OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0061432 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to methionine OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a methionine stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357 dph 2012-02-07T10:33:35Z True biological_process owl:Class GO:0030508 biolink:NamedThing obsolete thiol-disulfide exchange intermediate activity OBSOLETE. Functions as an exchange intermediate in thiol-disulfide exchange reactions. tmpzr1t_l9r_go_relaxed.owl thiol-disulphide exchange intermediate activity|thiol-disulfide exchange intermediate activity|glutaredoxin|thioredoxin This term was made obsolete because it represents a combination of gene product features and involvement in a biological process. GO:0015036|GO:0003756 True molecular_function owl:Class GO:0015029 biolink:NamedThing obsolete internalization receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl internalization receptor activity This term was made obsolete because internalization is a process, not a ligand to which a receptor might bind. True molecular_function owl:Class GO:0052142 biolink:NamedThing obsolete chemotaxis within host OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0006132 biolink:NamedThing obsolete dihydrolipoylprotein reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydrolipoylprotein reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0004148|GO:0022900 True biological_process owl:Class GO:0015466 biolink:NamedThing obsolete autolysin activity OBSOLETE. An agent that can lyse the cell in which it is synthesized. tmpzr1t_l9r_go_relaxed.owl autolysin activity This term was made obsolete because it represents a class of gene products. GO:0019835 True molecular_function owl:Class GO:0008552 biolink:NamedThing obsolete zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity OBSOLETE. Catalysis of the reaction: Me2+(in) + ATP = Me2+(out) + ADP + phosphate, where Me is Zn2+, Cd2+, Co2+, Ni2+ or Pb2+. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity This term was made obsolete because it represents more than one molecular function. GO:0015087|GO:0015086|GO:0005385|GO:0015662|GO:0015099|GO:0015094 True molecular_function owl:Class GO:0016923 biolink:NamedThing obsolete ligand-dependent thyroid hormone receptor interactor activity OBSOLETE. Ligand dependent interaction with the thyroid hormone receptor. tmpzr1t_l9r_go_relaxed.owl ligand-dependent thyroid hormone receptor interactor activity|TRIP4 This term was made obsolete because it represents a gene product and not a molecular function. GO:0046966 True molecular_function owl:Class GO:0075079 biolink:NamedThing obsolete positive regulation by host of symbiont receptor-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0036043 biolink:NamedThing obsolete microspike OBSOLETE. A dynamic, actin-rich projection extending from the surface of a migrating animal cell. tmpzr1t_l9r_go_relaxed.owl microspike GO:0044393 This term was made obsolete because it accidentally reused an exisiting id. See replacement term GO:0044393. bf 2011-12-06T01:31:16Z True cellular_component owl:Class GO:1903158 biolink:NamedThing obsolete L-glutamate transmembrane transporter activity involved in L-glutamate import into cell OBSOLETE. Any L-glutamate transmembrane transporter activity that is involved in L-glutamate import into cell. tmpzr1t_l9r_go_relaxed.owl L-glutamate transmembrane transporter activity involved in L-glutamate import into cell|glutamate/aspartate porter activity involved in L-glutamate import into cell|glutamate/aspartate:sodium symporter activity involved in L-glutamate import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:56:21Z True molecular_function owl:Class GO:0045560 biolink:NamedThing obsolete regulation of TRAIL receptor biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the TRAIL (TNF-related apoptosis inducing ligand) receptor. tmpzr1t_l9r_go_relaxed.owl regulation of TRAIL receptor biosynthesis|regulation of TRAIL receptor synthesis|regulation of TRAIL receptor anabolism|regulation of TRAIL receptor formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0008570 biolink:NamedThing obsolete myosin ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP by myosin that provides the energy for actomyosin contraction. tmpzr1t_l9r_go_relaxed.owl myosin ATPase activity GO:0000146 This term was made obsolete because it represents a class of gene products, and its definition incorporates process information. GO:0030048 True molecular_function owl:Class GO:0052393 biolink:NamedThing obsolete induction by host of symbiont defense response OBSOLETE. The activation by an organism of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation of symbiont defense response The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's defense response. True biological_process owl:Class GO:0005029 biolink:NamedThing obsolete CD27 receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl CD27 receptor activity This term was made obsolete because it describes the receptor type, and not an activity. GO:0042614 True molecular_function owl:Class GO:0007551 biolink:NamedThing obsolete maintenance of dosage compensation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl maintenance of dosage compensation This term was made obsolete because it was undefined and because there is no common mechanism of establishment of dosage compensation in different organisms. GO:0007549 True biological_process owl:Class GO:0031599 biolink:NamedThing obsolete ER proteasome regulatory particle OBSOLETE. The regulatory subcomplex of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0106039 biolink:NamedThing obsolete vesicle fusion involved in vesicle assembly OBSOLETE. A process carried out at the cellular level, which is the final step in vesicle assembly. Vesicle fusion occurs when a newly assembled vesicle closes up, following vesicle vesicle scission (GO:0099050). tmpzr1t_l9r_go_relaxed.owl This term was made obsolete becausethat 'fusion' should only be used for two membranes getting joined together, whereas in this case it would be one membrane 'closing/sealing up'. hjd 2017-07-17T13:56:31Z True biological_process owl:Class RO:0002161 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0009493 biolink:NamedThing obsolete adrenodoxin-type ferredoxin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl adrenodoxin-type ferredoxin GO:0009055 This term was made obsolete because it does not represent a function. True molecular_function owl:Class GO:0003077 biolink:NamedThing obsolete negative regulation of diuresis OBSOLETE. Any process that reduces the rate of diuresis. Diuresis is the process of renal water excretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of diuresis This term was made obsolete because its definition was inaccurate. GO:0035811 True biological_process owl:Class GO:0008148 biolink:NamedThing obsolete negative transcription elongation factor activity OBSOLETE. Any activity that decreases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation. tmpzr1t_l9r_go_relaxed.owl negative transcription elongation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0032785 True molecular_function owl:Class GO:0003732 biolink:NamedThing obsolete snRNA cap binding OBSOLETE. Interacting selectively with the cap structure at the 5' end of a small nuclear RNA molecule. tmpzr1t_l9r_go_relaxed.owl snRNA cap binding This term was made obsolete because the functional distinction for cap binding is the structure of the cap, not the type of RNA it is attached to. GO:0000339 True molecular_function owl:Class GO:0003929 biolink:NamedThing obsolete RAN small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl RAN small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0006606 True molecular_function owl:Class GO:0009633 biolink:NamedThing obsolete drought tolerance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl drought tolerance This term was made obsolete because 'tolerance' implies a phenotype rather than a biological process. GO:0009819|GO:0009414 True biological_process owl:Class GO:1903819 biolink:NamedThing obsolete detection of stimulus involved in mitotic cytokinesis checkpoint OBSOLETE. Any detection of stimulus that is involved in a mitotic cytokinesis checkpoint. tmpzr1t_l9r_go_relaxed.owl perception of stimulus involved in mitotic cytokinesis checkpoint|stimulus sensing involved in mitotic cytokinesis checkpoint|stimulus detection involved in mitotic cytokinesis checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. jl 2015-01-19T15:03:16Z True biological_process owl:Class GO:0046582 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0003715 biolink:NamedThing obsolete transcription termination factor activity OBSOLETE. Any activity that brings about termination of transcription. tmpzr1t_l9r_go_relaxed.owl transcriptional termination factor activity|transcription termination factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006353 True molecular_function owl:Class GO:0004278 biolink:NamedThing obsolete granzyme B activity OBSOLETE. Catalysis of the preferential cleavage of Asp-Xaa > Asn-Xaa > Met-Xaa, Ser-Xaa. tmpzr1t_l9r_go_relaxed.owl CCP1 proteinase|cytotoxic t-lymphocyte proteinase 2 activity|cytotoxic cell proteinase-1|CTLA1|granzyme G|granzyme B activity|CCPII|granzyme H GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0075066 biolink:NamedThing obsolete growth or development of symbiont in host organelle OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont in host organelle This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0052206 biolink:NamedThing obsolete modification of morphology or physiology of other organism via protein secreted by type II secretion system involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a second organism, mediated by a substance secreted by a type II secretion system in the first organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of morphology or physiology of other organism via protein secreted by type II secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0023011 biolink:NamedThing obsolete positive regulation of initiation of T cell receptor signaling OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of the initiation of T cell receptor signaling. tmpzr1t_l9r_go_relaxed.owl positive regulation of initiation of T cell receptor signalling|positive regulation of initiation of T cell receptor signaling This term was made obsolete because the meaning of the term is ambiguous. GO:0050862 2010-02-16T09:30:50Z True biological_process owl:Class GO:0030799 biolink:NamedThing obsolete regulation of cyclic nucleotide metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl regulation of cyclic nucleotide metabolism The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0046138 biolink:NamedThing obsolete coenzyme and prosthetic group biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl coenzyme and prosthetic group formation|coenzyme and prosthetic group biosynthesis|coenzyme and prosthetic group synthesis|coenzyme and prosthetic group biosynthetic process|coenzyme and prosthetic group anabolism This term was made obsolete because it was replaced by more specific terms. GO:0051191 True biological_process owl:Class GO:0007607 biolink:NamedThing obsolete taste perception OBSOLETE. The series of events required for the chemical composition of a soluble stimulus to be received and converted to a molecular signal. tmpzr1t_l9r_go_relaxed.owl taste perception This term was made obsolete because it was not clear whether the term applied to the whole process of taste perception or just the sensory transduction stage. GO:0050909|GO:0050912 True biological_process owl:Class GO:0043526 biolink:NamedThing obsolete neuroprotection OBSOLETE. Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss. tmpzr1t_l9r_go_relaxed.owl neuroprotection Wikipedia:Neuroprotection This term was made obsolete because it refers to assays rather than processes. If neuron death by apoptosis is assessed, consider using GO:0043523 regulation of neuron apoptotic process. If neuron death is assessed but the cell death modality isn't defined, refer to GO:0070997 neuron death. Where non-neuronal cells are involved, and/or processes other than cell death are described, please use other terms for annotation. True biological_process owl:Class GO:0019718 biolink:NamedThing obsolete rough microsome OBSOLETE. Vesicular particles formed from disrupted endoplasmic reticulum membranes and studded with ribosomes on the outside. tmpzr1t_l9r_go_relaxed.owl rough microsome This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005791 True cellular_component owl:Class GO:0030356 biolink:NamedThing obsolete small cytoplasmic ribonucleoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl scRNP|small cytoplasmic ribonucleoprotein GO:1990904 This term was made obsolete because it describes a cellular component rather than a molecular function. True molecular_function owl:Class GO:0006840 biolink:NamedThing obsolete mitochondrial alpha-ketoglutarate/malate transport OBSOLETE. The directed movement of alpha-ketoglutarate and malate into, out of or within a mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial alpha-ketoglutarate/malate transport|mitochondrial oxoglutarate/malate transport This term was made obsolete because it represents a function rather than a process. GO:0015742|GO:0015367|GO:0015743|GO:0006839 True biological_process owl:Class GO:0004203 biolink:NamedThing obsolete caspase-4 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl caspase-4 activity GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0085024 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by Sec complex OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Sec complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host morphology or physiology via protein secreted by the Sec secretion system This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:44:31Z True biological_process owl:Class GO:0100065 biolink:NamedThing obsolete negative regulation of leucine import by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates leucine import. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0090723 biolink:NamedThing obsolete growth cone part OBSOLETE. Any constituent part of a growth cone, the migrating motile tip of a growing nerve cell axon or dendrite. tmpzr1t_l9r_go_relaxed.owl GO:0030426 tb 2016-11-18T09:36:19Z True cellular_component owl:Class GO:0046268 biolink:NamedThing obsolete toluene-4-sulfonate biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of toluene-4-sulfonate, 4-methylbenzenesulfonate, the anion of sulfonic acid attached to a methylbenzene molecule. tmpzr1t_l9r_go_relaxed.owl toluene-4-sulphonate biosynthesis|toluene-4-sulfonate biosynthesis|4-toluenesulfonate biosynthesis|toluene-4-sulfonate biosynthetic process|toluene-4-sulfonate synthesis|toluene-4-sulfonate anabolism|toluene-4-sulfonate formation|4-toluenesulfonate biosynthetic process|toluene-4-sulphonate biosynthetic process GO:0018972 This term was made obsolete because toluene-4-sulfonate is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0042079 biolink:NamedThing obsolete GPI/GSI anchor metabolic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl GPI/GSI anchor metabolic process This term was made obsolete because it is a composite term that represents two individual processes. GO:0006505|GO:0042081 True biological_process owl:Class GO:0071510 biolink:NamedThing obsolete activation of MAPKKK activity involved in conjugation with cellular fusion OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl conjugation with cellular fusion, activation of MAP kinase kinase kinase activity|activation of MAP kinase kinase kinase activity during conjugation with cellular fusion|activation of MAPKKK activity involved in mating response|conjugation with cellular fusion, activation of MAPKKK activity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. mah 2010-01-05T02:10:18Z True biological_process owl:Class GO:0015258 biolink:NamedThing obsolete gluconate channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl gluconate channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0043075 biolink:NamedThing obsolete sperm cell nucleus (sensu Magnoliophyta) OBSOLETE. The nucleus of a plant pollen cell, the male gamete, and its descendents. tmpzr1t_l9r_go_relaxed.owl pollen germ cell nucleus|pollen germ-cell nucleus|sperm cell nucleus (sensu Magnoliophyta) This term was made obsolete because the definition was incorrect. GO:0048555 True cellular_component owl:Class GO:2000681 biolink:NamedThing obsolete negative regulation of rubidium ion transport OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of rubidium ion transport. tmpzr1t_l9r_go_relaxed.owl negative regulation of rubidium cation transport|negative regulation of Rb+ transport This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-10T10:54:34Z True biological_process owl:Class GO:0005613 biolink:NamedThing obsolete laminin receptor protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl laminin receptor protein This term was made obsolete because it is out of date. It seems to be referring to the non-integrin 34/67kDa laminin receptor, which new research has shown to actually be a ribosomal protein of the SP2 family. GO:0008305 True cellular_component owl:Class GO:0006912 biolink:NamedThing obsolete phagosome formation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl phagosome formation This term was made obsolete because of the ambiguity in its meaning. GO:0001845|GO:0006911 True biological_process owl:Class GO:0000764 biolink:NamedThing obsolete cellular morphogenesis involved in pheromone-induced unidirectional conjugation OBSOLETE. The change in form (cell shape and size) that contributes to sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo pheromone-induced unidirectional conjugation. tmpzr1t_l9r_go_relaxed.owl cellular morphogenesis involved in pheromone-induced unidirectional conjugation|cellular morphogenesis during pheromone-induced unidirectional This term was made obsolete because unidirectional conjugation occurs only in prokaryotes, which do not undergo morphogenetic changes associated with conjugation. In short, the process described by this term does not occur. True biological_process owl:Class GO:0048746 biolink:NamedThing obsolete smooth muscle fiber development OBSOLETE. The process whose specific outcome is the progression of smooth muscle fiber over time, from its formation to the mature structure. tmpzr1t_l9r_go_relaxed.owl smooth muscle fibre development|smooth muscle fiber development This term was made obsolete because smooth muscle does not have fibers. True biological_process owl:Class GO:1990496 biolink:NamedThing obsolete regulation of actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly OBSOLETE. An actin filament organization process that contributes to regulation of actomyosin contractile ring assembly during mitotic cytokinesis. tmpzr1t_l9r_go_relaxed.owl regulation of actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-09-25T09:21:57Z True biological_process owl:Class GO:0016850 biolink:NamedThing obsolete other lyase activity OBSOLETE. A grouping term for lyases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl other lyase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016829 True molecular_function owl:Class GO:0008472 biolink:NamedThing obsolete metallocarboxypeptidase D activity OBSOLETE. Catalysis of the reaction: peptidyl-L-lysine (or peptidyl-L-arginine) + H2O = peptide + L-lysine (or L-arginine). Function is activated by Co2+; inhibited by guanidinoethylmercaptosuccinic acid. tmpzr1t_l9r_go_relaxed.owl gp180 (duck)|metallocarboxypeptidase D activity|carboxypeptidase D (cattle, human, mouse, rat) GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0000826 biolink:NamedThing obsolete inositol pyrophosphate synthase activity OBSOLETE. Catalysis of the phosphorylation of inositol phosphates which possess diphosphate bonds. tmpzr1t_l9r_go_relaxed.owl inositol pyrophosphate synthase activity|inositol diphosphate synthase activity This term was made obsolete because it is incorrectly defined; 'inositol pyrophosphate' is a inositol derivative to which one (or more) pyrophosphate moieties are attached. 'Inositol pyrophosphate synthase' refers to a class of enzymes that catalyze various different reactions that result in the formation of an IP, so one cannot formulate a general reaction for them. GO:0052746 True molecular_function owl:Class GO:1990242 biolink:NamedThing obsolete innate immune response complex OBSOLETE. A protein complex involved in the innate immune response. tmpzr1t_l9r_go_relaxed.owl innate immune response complex This term was obsoleted at the TermGenie Gatekeeper stage. bhm 2013-11-26T13:36:52Z True cellular_component owl:Class GO:0033160 biolink:NamedThing obsolete positive regulation of protein import into nucleus, translocation OBSOLETE. Any process that activates or increases the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl positive regulation of protein import into cell nucleus, translocation This term has been obsoleted because it represents a substep of the parent (GO:0006606 protein import into nucleus), has been incorrectly used. True biological_process owl:Class GO:0060821 biolink:NamedThing obsolete inactivation of X chromosome by DNA methylation OBSOLETE. Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by a mechanism of DNA methylation. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22023 This term was obsoleted because it represents a molecular function. GO:0009048|GO:0035514 dph 2009-08-11T11:02:19Z True biological_process owl:Class GO:0023036 biolink:NamedThing obsolete initiation of signal transduction OBSOLETE. The process in which a signal causes activation of a receptor, for example, via a conformation change. tmpzr1t_l9r_go_relaxed.owl initiation of signal transduction|signal reception This term was made obsolete because the meaning of the term is ambiguous. Note that this term was intended for the annotation of both ligands and receptors. GO:0048018|GO:0038023|GO:0007165 2010-02-16T09:30:50Z True biological_process owl:Class GO:0016086 biolink:NamedThing obsolete allatostatin OBSOLETE. Peptide hormones produced by the corpora allata of insects that reversibly inhibit the production of juvenile hormone. tmpzr1t_l9r_go_relaxed.owl allatostatin This term was made obsolete because it refers to a gene product. GO:0045968|GO:0005102 True molecular_function owl:Class GO:0075176 biolink:NamedThing obsolete negative regulation of cAMP-mediated signaling in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its cAMP-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of cAMP-mediated signal transduction in response to host|negative regulation of cAMP-mediated signalling in response to host|negative regulation of symbiont cAMP-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0015219 biolink:NamedThing obsolete protein-DNA complex transmembrane transporter activity OBSOLETE. Enables the transfer of protein-DNA complexes from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl DNA-protein complex transmembrane transporter activity https://github.com/geneontology/go-ontology/issues/17005 This term was obsoleted because there is no experimental evidence that this function exists. True molecular_function owl:Class GO:0000265 biolink:NamedThing obsolete heterotrimeric G-protein GTPase, gamma-subunit OBSOLETE. Smallest subunit of a heterotrimeric G-protein GTPase; associates tightly with the beta subunit. tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GTPase, gamma-subunit This term was made obsolete because it does not represent a molecular function. GO:0005834|GO:0003924 True molecular_function owl:Class GO:1990363 biolink:NamedThing obsolete response to hydrolysate OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of hydrolysate (any product of hydrolysis). tmpzr1t_l9r_go_relaxed.owl response to hydrolysate This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-04-23T22:12:24Z True biological_process owl:Class GO:0052341 biolink:NamedThing obsolete catabolism by organism of cell wall pectin in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of cell wall pectin in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0021868 biolink:NamedThing obsolete ventricular zone cell-producing asymmetric radial glial cell division in forebrain OBSOLETE. The unequal mitotic division of a forebrain radial glial cell that gives rise to a radial glial cell and a ventricular zone cell. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0102192 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052377 biolink:NamedThing obsolete evasion or tolerance by organism of symbiont-produced phytoalexins OBSOLETE. The process by which an organism avoids the effects of phytoalexins produced as a defense response by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl evasion or tolerance by organism of symbiont phytoalexins|symbiont phytoalexin detoxification|evasion or tolerance of phytoalexins produced by symbiont in response to organism|evasion or tolerance by organism of symbiont-produced phytoalexins This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0004874 biolink:NamedThing obsolete aryl hydrocarbon receptor activity OBSOLETE. Combining with an aryl hydrocarbon and transmitting the signal to initiate a change in cell activity. The aryl hydrocarbon receptor is a ligand-activated transcription factor which translocates to the nucleus to activate transcription upon ligand-binding. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16732 This term was obsoleted because it represents a gene product. True molecular_function owl:Class GO:1900537 biolink:NamedThing obsolete negative regulation of glucose homeostasis OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of glucose homeostasis. tmpzr1t_l9r_go_relaxed.owl inhibition of glucose homeostasis|downregulation of glucose homeostasis|down regulation of glucose homeostasis|negative regulation of glucose homeostasis|down-regulation of glucose homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. hjd 2012-05-10T06:53:14Z True biological_process owl:Class GO:0006255 biolink:NamedThing obsolete UDP reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl UDP reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051062 True biological_process owl:Class RO:0002315 biolink:NamedThing results in acquisition of features of tmpzr1t_l9r_go_relaxed.owl RO:0002315 external results_in_acquisition_of_features_of GO:0008546 biolink:NamedThing obsolete microtubule/chromatin interaction OBSOLETE. Physical interaction between microtubules and chromatin via DNA binding proteins. tmpzr1t_l9r_go_relaxed.owl microtubule/chromatin interaction This term was made obsolete because it represents a molecular function. GO:0003677|GO:0030674|GO:0003682|GO:0008017 True biological_process owl:Class GO:0008423 biolink:NamedThing obsolete bleomycin hydrolase activity OBSOLETE. Catalysis of the inactivation of bleomycin B2 (a cytotoxic glycometallopeptide) by hydrolysis of a peptide bond of beta-aminoalanine, but also shows general aminopeptidase activity. The specificity varies somewhat with source, but amino acid arylamides of Met, Leu and Ala are preferred. tmpzr1t_l9r_go_relaxed.owl bleomycin hydrolase activity|aminopeptidase C (Lactococcus lactis) GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990958 biolink:NamedThing obsolete response to thyrotropin-releasing hormone OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyrotropin-releasing hormone (TRH) stimulus. TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary. tmpzr1t_l9r_go_relaxed.owl response to TRH This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-06-06T21:07:34Z True biological_process owl:Class has_target_start_location biolink:NamedThing has target start location tmpzr1t_l9r_go_relaxed.owl RO:0002338 external has_target_start_location GO:0004929 biolink:NamedThing obsolete frizzled-2 receptor activity OBSOLETE. Combining with to a member of the Wnt-family of signaling molecules to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl frizzled-2 receptor activity GO:0042813 This term was made obsolete because it represents a gene product rather than an activity. GO:0007223 True molecular_function owl:Class GO:0045297 biolink:NamedThing obsolete post-mating behavior OBSOLETE. The specific behavior of an organism following mating. tmpzr1t_l9r_go_relaxed.owl post-mating behaviour This term was obsoleted because it was not precisely defined. True biological_process owl:Class GO:0039647 biolink:NamedThing obsolete suppression by virus of host poly(A)-binding protein activity OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host poly(A)-binding protein (PABP) activity. PABP binds to the poly(A) tail of mRNA to facilitate translation. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host PABP activity|inhibition of host poly(A)-binding protein by virus https://github.com/geneontology/go-ontology/issues/22163 This term was obsoleted because it represents a molecular function. GO:0039604 bf 2012-10-09T15:14:07Z True biological_process owl:Class GO:0005014 biolink:NamedThing obsolete neurotrophin TRKA receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl neurotrophin TRKA receptor activity This term was made obsolete because it represents a gene product. GO:0004714|GO:0007165|GO:0043121|GO:0048406 True molecular_function owl:Class GO:0046617 biolink:NamedThing obsolete nucleolar size increase (sensu Saccharomyces) OBSOLETE. The process of nucleolar expansion, as seen in Saccharomyces. tmpzr1t_l9r_go_relaxed.owl nucleolar size increase (sensu Saccharomyces) This term was made obsolete because it does not describe a biological process. GO:0007576|GO:0007571 True biological_process owl:Class GO:0075078 biolink:NamedThing obsolete modulation by host of symbiont receptor-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The receptor is defined as a protein on the cell membrane or within the cytoplasm or cell nucleus that binds to a specific molecule (a ligand) such as a neurotransmitter or a hormone or other substance, and initiates the cellular response to the ligand. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1900389 biolink:NamedThing obsolete regulation of glucose import by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of glucose import. tmpzr1t_l9r_go_relaxed.owl regulation of glucose uptake by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-18T03:52:43Z True biological_process owl:Class GO:0046591 biolink:NamedThing obsolete embryonic leg joint morphogenesis OBSOLETE. The process, occurring in the embryo, by which the anatomical structures of the leg joint are generated and organized. A leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner. tmpzr1t_l9r_go_relaxed.owl embryonic leg joint morphogenesis This term was made obsolete because leg is a mechano-functional grouping, and having both 'leg morphogenesis' and 'hindlimb morphogenesis' terms causes errors in querying. GO:0036023 True biological_process owl:Class GO:0019936 biolink:NamedThing obsolete inositol phospholipid-mediated signaling OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inositol phospholipid-mediated signaling|inositol phospholipid-mediated signalling This term was made obsolete because it did not adequately describe phosphoinositide-mediated signaling. GO:0048017|GO:0048016 True biological_process owl:Class GO:0052246 biolink:NamedThing obsolete positive energy taxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism on or near a second organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive energy taxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0050516 biolink:NamedThing obsolete inositol polyphosphate multikinase activity OBSOLETE. Catalysis of the reactions: ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,4,5,6-tetrakisphosphate, and ATP + 1D-myo-inositol 1,4,5,6-tetrakisphosphate = ADP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl IP3/IP4 6-/3-kinase activity|inositol-polyphosphate multikinase activity|ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase activity|inositol polyphosphate multikinase activity|IpmK|AtIpk2alpha|AtIpk2beta|ArgRIII|IP3/IP4 dual-specificity 6-/3-kinase activity|AtIpk2-alpha activity|IpK2 activity|inositol polyphosphate 6-/3-/5-kinase activity|AtIpk2-beta activity EC:2.7.1.151|MetaCyc:2.7.1.151-RXN This term was made obsolete because this activity is currently defined as catalyzing two sequential reactions based on a gene product. However, "inositol polyphosphate multikinase activity" in some organisms can catalyze additional reactions. In addition, the reactions listed in the definition can be catalyzed independently by other gene products. True molecular_function owl:Class GO:0038078 biolink:NamedThing obsolete MAP kinase phosphatase activity involved in regulation of innate immune response OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that contributes to an innate immune response. tmpzr1t_l9r_go_relaxed.owl MAPK phosphatase activity involved in regulation of innate immune response https://github.com/geneontology/go-ontology/issues/21552 This term was obsoleted because it represents a biological process within the molecular function branch. bf 2012-01-26T02:35:52Z True molecular_function owl:Class GO:0018367 biolink:NamedThing obsolete free L-amino acid racemization OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl free L-amino acid racemization This term was made obsolete because it is not clear that this process occurs. GO:0006520 True biological_process owl:Class GO:0022865 biolink:NamedThing obsolete transmembrane electron transfer carrier OBSOLETE. Enables electron flow across a biological membrane, from donors localized on one side of the membrane to acceptors localized on the other side. These systems contribute to or subtract from the membrane potential, depending on the direction of electron flow. They are therefore important to cellular energetics. tmpzr1t_l9r_go_relaxed.owl TC:5 The reason for obsoletion is that the term does not represent a molecular function but rather a process. True molecular_function owl:Class GO:0001061 biolink:NamedThing obsolete bacterial-type RNA polymerase activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a bacterial-type specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/16738 GO:0003899 This term was obsoleted because the activity is the same as its parent. krc 2010-10-19T03:36:01Z True molecular_function owl:Class GO:0061777 biolink:NamedThing obsolete DNA clamp activity OBSOLETE. A DNA binding activity in which a protein complex interacts selectively and non-covalently with single DNA duplex to tightly encircle the DNA. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that the term captures the structure of a complex, not a specific function. dph 2016-07-13T13:15:24Z True molecular_function owl:Class GO:0100016 biolink:NamedThing obsolete regulation of thiamine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates thiamine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0008538 biolink:NamedThing obsolete proteasome activator activity OBSOLETE. Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis. tmpzr1t_l9r_go_relaxed.owl proteasome activator activity|PA28 The term was made obsolete because 'proteasome' is not a valid molecular function term. GO:0061133|GO:0061136 True molecular_function owl:Class GO:0006134 biolink:NamedThing obsolete dihydrobiopterin reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydrobiopterin reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0022900|GO:0051066|GO:0047040 True biological_process owl:Class GO:0098019 biolink:NamedThing obsolete virus tail, major subunit OBSOLETE. The part of the viral tail that comprises the most common subunit type. tmpzr1t_l9r_go_relaxed.owl major tail protein The reason for obsoletion is that these are not precise structures: major (most abundant) and minor subunits of viral tails vary in different viruses/phages. bm 2012-07-19T11:32:55Z True cellular_component owl:Class GO:0016341 biolink:NamedThing obsolete other collagen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl other collagen GO:0005581 This term was made obsolete because it is a redundant grouping term. True cellular_component owl:Class GO:0030052 biolink:NamedThing obsolete parvulin OBSOLETE. A peptidyl-prolyl isomerase isolated from Escherichia coli. It does not have any function as an immunophilin. tmpzr1t_l9r_go_relaxed.owl parvulin GO:0003755 This term was made obsolete because it describes a gene product. True molecular_function owl:Class GO:0045802 biolink:NamedThing obsolete negative regulation of cytoskeleton OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the organization, biogenesis or maintenance of the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl negative regulation of cytoskeleton This term was made obsolete because cytoskeleton is not a process, so the term made no sense. GO:0007010 True biological_process owl:Class GO:0072430 biolink:NamedThing obsolete detection of DNA damage stimulus involved in mitotic G1 DNA damage checkpoint OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to a mitotic cell cycle G1/S transition DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl mitotic cell cycle G1/S transition DNA damage checkpoint sensor mechanism|mitotic cell cycle G1/S transition DNA damage checkpoint sensor process|sensing involved in mitotic cell cycle G1/S transition DNA damage checkpoint|detection of DNA damage stimulus involved in mitotic cell cycle G1/S transition DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-08T04:37:40Z True biological_process owl:Class GO:0030829 biolink:NamedThing obsolete regulation of cGMP catabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cGMP. tmpzr1t_l9r_go_relaxed.owl regulation of cGMP breakdown|regulation of cGMP catabolism|regulation of cGMP degradation The reason for obsoletion is that this term represent the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:1902720 biolink:NamedThing obsolete intracellular sequestering of copper ion OBSOLETE. The process of binding or confining copper ions in an intracellular area such that they are separated from other components of a biological system. tmpzr1t_l9r_go_relaxed.owl intracellular sequestering of copper ion This term was obsoleted at the TermGenie Gatekeeper stage. mr 2014-02-24T16:09:18Z True biological_process owl:Class GO:0030441 biolink:NamedThing obsolete activation of MAPKKK during sporulation (sensu Fungi) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK during sporulation (sensu Fungi) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0075087 biolink:NamedThing obsolete modulation by host of symbiont G protein-coupled receptor signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont G-protein coupled receptor protein signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0010503 biolink:NamedThing obsolete negative regulation of cell cycle arrest in response to nitrogen starvation OBSOLETE. Any process that stops, prevents or reduces the frequency or rate of cell cycle arrest in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed. True biological_process owl:Class GO:0052242 biolink:NamedThing obsolete chemotaxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl chemotaxis within other organism during symbiotic interaction|chemotaxis in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0008945 biolink:NamedThing obsolete oligopeptidase B activity OBSOLETE. Catalysis of the hydrolysis of Arg-Xaa and Lys-Xaa bonds in oligopeptides, even when P1' residue is proline. tmpzr1t_l9r_go_relaxed.owl oligopeptidase B activity|Escherichia coli alkaline proteinase II|protease II activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051187 biolink:NamedThing obsolete cofactor catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a cofactor, a substance that is required for the activity of an enzyme or other protein. tmpzr1t_l9r_go_relaxed.owl cofactor breakdown|cofactor catabolism|cofactor degradation 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0005203 biolink:NamedThing obsolete proteoglycan OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl proteoglycan This term was made obsolete because it describes the composition (i.e. proteoglycan) of a gene product, not a molecular function. True molecular_function owl:Class GO:0001007 biolink:NamedThing obsolete transcription factor activity, RNA polymerase III transcription factor binding OBSOLETE. Binding to an RNA polymerase III transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription factor binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2010-08-18T06:24:07Z True molecular_function owl:Class GO:0023042 biolink:NamedThing obsolete signaling via protein/peptide mediator OBSOLETE. The process in which information is sent from one location to another, within a living organism or between living organisms, via a protein/peptide mediator. tmpzr1t_l9r_go_relaxed.owl signaling via protein/peptide mediator|signalling via protein/peptide mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class GO:0004239 biolink:NamedThing obsolete methionyl aminopeptidase activity OBSOLETE. Catalysis of the release of N-terminal amino acids, preferentially methionine, from peptides and arylamides. tmpzr1t_l9r_go_relaxed.owl methionine aminopeptidase activity|MAP|L-methionine aminopeptidase activity|methionyl aminopeptidase activity|peptidase M activity MetaCyc:3.4.11.18-RXN|EC:3.4.11.18 This term was made obsolete because it represents a gene product. GO:0004177|GO:0008235|GO:0070084 True molecular_function owl:Class GO:0080125 biolink:NamedThing obsolete multicellular structure septum development OBSOLETE. The process whose specific outcome is the progression of the multicellular structure septum over time, from its formation to the mature structure. The multicellular structure septum is the thin partition or membrane that divides a cavity or a mass of tissue. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is not a useful grouping term. dhl 2009-04-28T04:31:14Z True biological_process owl:Class GO:0008533 biolink:NamedThing obsolete astacin activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds in substrates containing five or more amino acids, preferentially with Ala in P1', and Pro in P2'. tmpzr1t_l9r_go_relaxed.owl Astacus proteinase activity|astacus proteinase activity|astacin activity|crayfish small-molecule proteinase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0030637 biolink:NamedThing obsolete acetate derivative catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of derivatives of acetic acid. tmpzr1t_l9r_go_relaxed.owl acetate derivative breakdown|acetate derivative degradation|acetate derivative catabolic process|acetate derivative catabolism This term was made obsolete because it is an unnecessary grouping term and has been replaced by terms to describe metabolism of specific compounds. True biological_process owl:Class GO:0052222 biolink:NamedThing obsolete negative aerotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative aerotaxis in environment of other organism during symbiotic interaction|negative aerotaxis in response to environment of other organism https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1990977 biolink:NamedThing obsolete negative regulation of mitotic DNA replication initiation from late origin OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2016-07-11T14:56:38Z True biological_process owl:Class GO:0019833 biolink:NamedThing obsolete ice nucleation activity OBSOLETE. Catalysis of the formation of ice crystals in extracellular fluid at relatively high temperatures (up to -2 degrees C) to protect the organism from damage by intracellular ice formation. Ice nucleation proteins function by binding an ice crystal and then encouraging it to form larger crystals. Ice nucleation is a chemical process but these proteins can positively regulate it. There are two different uses of ice nucleation proteins: bacteria secrete them extracellularly to cause a host organism's cells to freeze and die, and fish use them to protect themselves from intracellular ice formation. tmpzr1t_l9r_go_relaxed.owl ice nucleation activity This term was made obsolete because it represents a biological process. GO:0042309|GO:0050825 True molecular_function owl:Class GO:0046212 biolink:NamedThing obsolete methyl ethyl ketone biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor. It is used as a solvent and in making plastics, textiles and paints. tmpzr1t_l9r_go_relaxed.owl methyl ethyl ketone biosynthetic process|methyl ethyl ketone anabolism|methyl ethyl ketone synthesis|methyl ethyl ketone formation|methyl ethyl ketone biosynthesis GO:0018928 This term was made obsolete because methyl ethyl ketone is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0004987 biolink:NamedThing obsolete kappa-opioid receptor activity OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of kappa-opioid receptors, including high affinity for dynorphins. tmpzr1t_l9r_go_relaxed.owl kappa-opioid receptor activity Wikipedia:Kappa_Opioid_receptor This term was made obsolete because the receptor is defined based on its pharmacological properties. GO:0038048 True molecular_function owl:Class GO:1904013 biolink:NamedThing obsolete xenon atom binding OBSOLETE. Binding to xenon atom. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that binding to xenon does not have physiological relevance. sl 2015-03-06T19:07:43Z True molecular_function owl:Class GO:0052354 biolink:NamedThing obsolete catabolism by organism of carbohydrate in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of carbohydrate molecules within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of carbohydrate in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0023053 biolink:NamedThing obsolete signal initiation by mechanical effect OBSOLETE. The process in which a mechanical signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by mechanical effect This term was made obsolete because the meaning of the term is ambiguous. GO:0007165|GO:0071260|GO:0038023 2010-02-16T09:30:50Z True biological_process owl:Class GO:0070190 biolink:NamedThing obsolete inositol hexakisphosphate 1-kinase or 3-kinase activity OBSOLETE. Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 1-diphospho-1D-myo-inositol (2,3,4,5,6)pentakisphosphate, and ATP + 1D-myo-inositol hexakisphosphate = ADP + 3-diphospho-1D-myo-inositol (1,2,4,5,6)pentakisphosphate. tmpzr1t_l9r_go_relaxed.owl inositol hexakisphosphate 1-kinase or 3-kinase activity This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0052724|GO:0052723 True molecular_function owl:Class GO:0033868 biolink:NamedThing obsolete Goodpasture-antigen-binding protein kinase activity OBSOLETE. Catalysis of the reaction: ATP + Goodpasture antigen-binding protein = ADP + Goodpasture antigen-binding phosphoprotein. tmpzr1t_l9r_go_relaxed.owl STK11|Goodpasture antigen-binding protein kinase activity|GPBPK|GPBP kinase activity|ATP:Goodpasture antigen-binding protein phosphotransferase activity EC:2.7.11.9|MetaCyc:2.7.11.9-RXN This term was made obsolete because it represents a specific gene product. True molecular_function owl:Class GO:0046255 biolink:NamedThing obsolete 2,4,6-trinitrotoluene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene. tmpzr1t_l9r_go_relaxed.owl 2,4,6-trinitrotoluene synthesis|2,4,6-trinitrotoluene anabolism|2,4,6-trinitrotoluene biosynthesis|2,4,6-trinitrotoluene biosynthetic process|2,4,6-trinitrotoluene formation GO:0018974 This term was made obsolete because 2,4,6-trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0098740 biolink:NamedThing obsolete multi organism cell adhesion OBSOLETE. Cell adhesion that involves cells from multiple organisms or that is mediated by gene products from multiple organisms. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008619 biolink:NamedThing obsolete RHEB small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl RHEB small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0001558|GO:0051726 True molecular_function owl:Class GO:1905158 biolink:NamedThing obsolete regulation of Factor XII activation OBSOLETE. Any process that modulates the frequency, rate or extent of Factor XII activation. tmpzr1t_l9r_go_relaxed.owl regulation of Hageman factor activation This term was accidentally approved after TermGenie review. It should not have been approved. sl 2016-04-19T23:03:25Z True biological_process owl:Class GO:0008245 biolink:NamedThing obsolete lysosomal membrane hydrogen-transporting ATPase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl V-ATPase|lysosomal membrane hydrogen-transporting ATPase This term was made obsolete because more specific terms were created. GO:0046611 True cellular_component owl:Class GO:0005603 biolink:NamedThing obsolete complement component C2 complex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl complement component C2 complex This term was made obsolete because prior to cleavage, complement component C2 is a single polypeptide rather than a complex, and after cleavage the products do not remain physically associated; there is thus no known biological entity corresponding to "complement C2 complex". True cellular_component owl:Class GO:0043901 biolink:NamedThing obsolete negative regulation of multi-organism process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is an unnecessary grouping term. True biological_process owl:Class GO:1990807 biolink:NamedThing obsolete protein N-acetyltransferase activity OBSOLETE. Catalysis of the transfer of an acetyl group to a nitrogen atom on the amino acid of a protein. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. vw 2015-07-20T15:19:23Z True molecular_function owl:Class GO:0100023 biolink:NamedThing obsolete regulation of meiotic nuclear division by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates meiotic nuclear division. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0006989 biolink:NamedThing obsolete unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase This term was made obsolete because it represents a function rather than a process. GO:0008452 True biological_process owl:Class GO:0050824 biolink:NamedThing obsolete water binding OBSOLETE. Binding to water (H2O). tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because water binding is non-specific. True molecular_function owl:Class GO:0009502 biolink:NamedThing obsolete photosynthetic electron transport chain OBSOLETE. A series of membrane-linked oxidation-reduction reactions in which electrons are transferred from an initial electron donor through a series of intermediates to a final electron acceptor (usually oxygen). tmpzr1t_l9r_go_relaxed.owl photosynthetic electron transport chain This term was made obsolete because it represents a process. GO:0009767 True cellular_component owl:Class GO:0052434 biolink:NamedThing obsolete modulation by organism of symbiont cell-mediated immune response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of any form of cell-based immune response of a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont cell-based immune response|modulation by organism of symbiont cell-mediated immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052557 biolink:NamedThing obsolete positive regulation by organism of symbiont immune response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0004299 biolink:NamedThing obsolete proteasome endopeptidase activity OBSOLETE. Catalysis of the cleavage at peptide bonds with very broad specificity. tmpzr1t_l9r_go_relaxed.owl proteasome|proteasome endopeptidase activity|proteasome endopeptidase complex|multicatalytic endopeptidase This term was made obsolete because it mentions a component term in the text string. GO:0008233|GO:0004175 True molecular_function owl:Class GO:0015993 biolink:NamedThing obsolete molecular hydrogen transport OBSOLETE. The directed movement of molecular hydrogen (H2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there molecular hydrogen (H2) diffuses passively through membranes (see https://www.researchgate.net/post/How_molecular_hydrogen_is_transported_through_the_cytoplasmic_membrane_of_Escherichia_coli). True biological_process owl:Class GO:0036096 biolink:NamedThing obsolete 3'-5'-exoribonuclease activity involved in pre-miRNA 3'-end processing OBSOLETE. Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule that contributes to forming the mature 3' end of a miRNA from a pre-miRNA. tmpzr1t_l9r_go_relaxed.owl 3'-5'-exoribonuclease activity involved in pre-miRNA 3'-end processing|exonucleolytic trimming to generate 3' end of miRNA from pre-miRNA This term was made obsolete because it is not real a process, and was created accidentally. bf 2012-01-24T02:29:03Z True molecular_function owl:Class GO:0045896 biolink:NamedThing obsolete regulation of transcription during mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription that occurs during the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of transcription, mitotic|mitotic regulation of transcription https://github.com/geneontology/go-ontology/issues/14896 The reason for obsoletion is that 'during' should be captured using an annotation extension. GO:0006357|GO:0044772 True biological_process owl:Class GO:0042529 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0006802 biolink:NamedThing obsolete catalase reaction OBSOLETE. The processes involved in the induction or activation of catalase, an enzyme that catalyzes the conversion of H2O2 into H2O. tmpzr1t_l9r_go_relaxed.owl hydroperoxidase reaction|catalase reaction This term was made obsolete because it represents a molecular function. GO:0004096 True biological_process owl:Class GO:0015644 biolink:NamedThing obsolete lipoprotein antitoxin OBSOLETE. Binds to a lipoprotein toxin, which is usually derived from a microorganism, thereby neutralizing it. tmpzr1t_l9r_go_relaxed.owl lipoprotein antitoxin GO:0015643 This term was made obsolete because it does not represent a function distinct from its parent term. True molecular_function owl:Class GO:0005082 biolink:NamedThing obsolete receptor signaling protein tyrosine phosphatase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl receptor signalling protein tyrosine phosphatase signalling protein activity|receptor signaling protein tyrosine phosphatase signaling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0035556 True molecular_function owl:Class GO:0009487 biolink:NamedThing obsolete glutaredoxin OBSOLETE. A small disulfide-containing redox protein that serves as a glutathione-disulfide oxidoreductase. tmpzr1t_l9r_go_relaxed.owl glutaredoxin This term was made obsolete because it represents a gene product. GO:0015038|GO:0015036|GO:0003756 True molecular_function owl:Class GO:0085008 biolink:NamedThing obsolete interaction with host via secreted substance released from microneme OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the microneme, a small, elongated secretory organelle that forms part of the apical complex of an apicomplexan parasite. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:03:16Z True biological_process owl:Class GO:0075161 biolink:NamedThing obsolete negative regulation of G-protein alpha subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont G-protein alpha subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont G-protein alpha subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0035956 biolink:NamedThing obsolete regulation of starch catabolic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of the breakdown of starch, by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of starch degradation by regulation of transcription from Pol II promoter|regulation of starch breakdown by regulation of transcription from RNA polymerase II promoter|regulation of starch catabolic process by regulation of transcription from Pol II promoter|regulation of starch catabolism by regulation of transcription from Pol II promoter|regulation of starch degradation by regulation of transcription from RNA polymerase II promoter|regulation of starch breakdown by regulation of transcription from Pol II promoter|regulation of starch catabolism by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0003822 biolink:NamedThing obsolete MHC-interacting protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl MHC-interacting protein This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008229 biolink:NamedThing obsolete opsonin activity OBSOLETE. Binds to microorganisms or other particulate material (for example, foreign erythrocytes) to increase the susceptibility of the latter to phagocytosis. tmpzr1t_l9r_go_relaxed.owl opsonin activity This term was made obsolete because it represents a class of gene products. GO:0003823 True molecular_function owl:Class GO:0001950 biolink:NamedThing obsolete plasma membrane enriched fraction OBSOLETE. The fraction of cells, prepared by disruptive biochemical methods, that is enriched for plasma membranes. tmpzr1t_l9r_go_relaxed.owl PME fraction|plasma membrane enriched fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005886 True cellular_component owl:Class GO:0031275 biolink:NamedThing obsolete regulation of lateral pseudopodium assembly OBSOLETE. Any process that modulates the frequency, rate or extent of the assembly of pseudopodia from the lateral side of the cell. tmpzr1t_l9r_go_relaxed.owl regulation of lateral pseudopodium formation https://github.com/geneontology/go-ontology/issues/21738 The regulation of lateral pseudopodium assembly terms were not used consistently. The negative regulation term has been replaced by GO:0120320 lateral pseudopodium retraction. True biological_process owl:Class GO:0085009 biolink:NamedThing obsolete interaction with host mediated by symbiont secreted substance released from Maurer's cleft OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via Maurer's cleft. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host mediated by symbiont secreted substance released from Maurers cleft This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:08:39Z True biological_process owl:Class GO:0010545 biolink:NamedThing obsolete Hsp90 protein regulator activity OBSOLETE. Binds to and modulates the activity of the molecular chaperone Hsp90. tmpzr1t_l9r_go_relaxed.owl Hsp90 protein regulator activity GO:0051879 This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp90 protein activity'. GO:0051082|GO:0051787|GO:0006457 True molecular_function owl:Class GO:0052435 biolink:NamedThing obsolete modulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of symbiont MAP kinase-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of defense-related symbiont mitogen activated protein kinase-mediated signal transduction pathway by organism|modulation of defense-related symbiont MAPK-mediated signal transduction pathway by organism The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0035952 biolink:NamedThing obsolete negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of oligopeptide transport by stopping, preventing or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of oligopeptide transport by inhibition of transcription from RNA polymerase II promoter|negative regulation of oligopeptide transport by down regulation of transcription from RNA polymerase II promoter|negative regulation of oligopeptide transport by down-regulation of transcription from RNA polymerase II promoter|negative regulation of oligopeptide transport by negative regulation of transcription from Pol II promoter|negative regulation of oligopeptide transport by downregulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0001190 biolink:NamedThing obsolete transcriptional activator activity, RNA polymerase II transcription factor binding OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription factor binding transcription activator activity https://github.com/geneontology/go-ontology/issues/16053 The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. GO:0001228|GO:0061629 krc 2011-08-25T02:07:14Z True molecular_function owl:Class GO:0055126 biolink:NamedThing obsolete Nup82 complex OBSOLETE. A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p. tmpzr1t_l9r_go_relaxed.owl Nup82 complex GO:0044612 jid 2009-10-12T08:35:34Z True cellular_component owl:Class GO:0008529 biolink:NamedThing obsolete endogenous peptide receptor activity OBSOLETE. Combining with an intracellular peptide to initiate a change in cell activity. tmpzr1t_l9r_go_relaxed.owl endogenous peptide receptor activity This term was made obsolete because it contains both component and function information. GO:0001653|GO:0005622 True molecular_function owl:Class GO:0018325 biolink:NamedThing obsolete enzyme active site formation via S-phospho-L-cysteine OBSOLETE. The transient phosphorylation of peptidyl-cysteine to form S-phospho-L-cysteine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0034 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:3142516 and PMID:22927394. True biological_process owl:Class GO:0048192 biolink:NamedThing obsolete peptide antigen stabilization activity OBSOLETE. Strengthening of a bond with a peptide antigen; a fragment of a foreign protein derived by proteolysis within the cell. tmpzr1t_l9r_go_relaxed.owl peptide antigen stabilization activity GO:0050823 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0052427 biolink:NamedThing obsolete modulation by host of symbiont peptidase activity OBSOLETE. The process in which an organism effects a change in symbiont peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont protease activity https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0016564 biolink:NamedThing obsolete transcription repressor activity OBSOLETE. Any transcription regulator activity that prevents or downregulates transcription. tmpzr1t_l9r_go_relaxed.owl transcription repressor activity|negative transcriptional regulator activity|transcriptional repressor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0001227 True molecular_function owl:Class GO:0001169 biolink:NamedThing obsolete transcription factor activity, RNA polymerase I CORE element sequence-specific binding OBSOLETE. Binding to CORE element, a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery in order to modulate transcription by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I core promoter sequence-specific DNA binding transcription factor|RNA polymerase I CORE element sequence-specific DNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/15787 This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2011-02-03T04:10:42Z True molecular_function owl:Class GO:0004868 biolink:NamedThing obsolete serpin OBSOLETE. A superfamily of proteins, many of which inhibit serine proteinases and exhibit a high degree of homology with classical serine proteinase inhibitors such as alpha1-antitrypsin or antithrombin. tmpzr1t_l9r_go_relaxed.owl serpin This term was made obsolete because it represents a class of gene products. GO:0004867 True molecular_function owl:Class GO:0014918 biolink:NamedThing obsolete positive regulation of natriuresis by pressure natriuresis OBSOLETE. The process in which pressure natriuresis increases rate of natriuresis. tmpzr1t_l9r_go_relaxed.owl positive regulation of natriuresis by pressure natriuresis GO:0035819 This term was made obsolete because its definition was inaccurate. True biological_process owl:Class GO:1905107 biolink:NamedThing obsolete cellular response to Dizocilpine OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Dizocilpine stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. sl 2016-04-04T20:27:01Z True biological_process owl:Class RO:0002299 biolink:NamedThing results in maturation of tmpzr1t_l9r_go_relaxed.owl RO:0002299 external results_in_maturation_of GO:0106187 biolink:NamedThing obsolete translocase activity acting on hydrons linked to oxidoreductase reactions OBSOLETE. Catalysis of the translocation of hydrons linked to an oxidoreduction reaction. tmpzr1t_l9r_go_relaxed.owl EC:7.1.1.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-07T18:04:40Z True molecular_function owl:Class GO:0019845 biolink:NamedThing obsolete exotoxin activity OBSOLETE. The function of a toxin formed by a microorganism and secreted into the surrounding medium. tmpzr1t_l9r_go_relaxed.owl exotoxin activity This term was made obsolete because it represents a class of gene products. GO:0090729|GO:0005576 True molecular_function owl:Class GO:0100035 biolink:NamedThing obsolete negative regulation of transmembrane transport by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates transmembrane transport. tmpzr1t_l9r_go_relaxed.owl The term was obsoleted because it is better represented by a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0015447 biolink:NamedThing obsolete type II protein secretor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl type II protein secretor activity This term was made obsolete because it does not accurately reflect the function of the proteins involved. True molecular_function owl:Class GO:1903693 biolink:NamedThing obsolete regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic G1 cell cycle arrest in response to nitrogen starvation. tmpzr1t_l9r_go_relaxed.owl regulation of G1 mitotic cell cycle arrest in response to nitrogen starvation https://github.com/geneontology/go-ontology/issues/20989 This term was obsoleted because it does not represent a specific process. al 2014-12-02T18:16:03Z True biological_process owl:Class GO:0023017 biolink:NamedThing obsolete signal transmission via diffusible molecule OBSOLETE. The process in which a signal is conveyed via a diffusible molecule. tmpzr1t_l9r_go_relaxed.owl signal transmission via diffusible molecule|signaling via diffusible mediator This term was made obsolete because the meaning of the term is ambiguous. GO:0007267 2010-02-16T09:30:50Z True biological_process owl:Class GO:1900448 biolink:NamedThing obsolete regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of pyrimidine nucleotide biosynthesis by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. jh 2012-04-27T02:57:38Z True biological_process owl:Class GO:0015003 biolink:NamedThing obsolete copper electron carrier OBSOLETE. A copper-containing entity that serves as an electron acceptor and electron donor in an electron transport system. tmpzr1t_l9r_go_relaxed.owl copper electron carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0015617 biolink:NamedThing obsolete pilin/fimbrilin exporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pilin/fimbrilin exporter activity This term was made obsolete because it represents a gene product. GO:0015462 True molecular_function owl:Class GO:0000189 biolink:NamedThing obsolete MAPK import into nucleus OBSOLETE. The directed movement of a MAP kinase to the nucleus upon activation. tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 True biological_process owl:Class GO:0009485 biolink:NamedThing obsolete cbb3-type cytochrome c oxidase OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl cbb3-type cytochrome c oxidase GO:0004129 This term was made obsolete because it describes a class of gene products rather than a molecular function. True molecular_function owl:Class GO:0018314 biolink:NamedThing obsolete protein-pyrroloquinoline-quinone linkage OBSOLETE. The covalent cross-linking of pyrroloquinoline-quinone to peptidyl-glutamic acid and peptidyl-tyrosine. tmpzr1t_l9r_go_relaxed.owl protein-pyrroloquinoline-quinone linkage GO:0006464 True biological_process owl:Class GO:0000726 biolink:NamedThing obsolete non-recombinational repair OBSOLETE. A DNA repair process in which that does not require the exchange of genetic material between the broken DNA molecule and a homologous DNA region. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18901 This term was obsoleted because it was defined negatively, and it represents an unnecessary grouping class. True biological_process owl:Class RO:0002220 biolink:NamedThing adjacent to tmpzr1t_l9r_go_relaxed.owl RO:0002220 external adjacent_to GO:0044133 biolink:NamedThing obsolete growth of symbiont on or near host OBSOLETE. The increase in size or mass of a symbiont within the cells or tissues of its host organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. jl 2009-08-04T03:36:49Z True biological_process owl:Class GO:0052240 biolink:NamedThing obsolete positive chemotaxis in other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis in other organism during symbiotic interaction|positive chemotaxis within other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0016304 biolink:NamedThing obsolete phosphatidylinositol 3-kinase activity, class I OBSOLETE. A heterodimeric phosphoinositide 3-kinase which can phosphorylate phosphatidylinositol, phosphatidylinositol-4-phosphate or phosphatidylinositol-4,5-bisphosphate. Also possesses intrinsic protein kinase activity. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase activity, class I This term was made obsolete because it represents a class of gene products. GO:0046934|GO:0016303|GO:0035005 True molecular_function owl:Class GO:1900462 biolink:NamedThing obsolete negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of pseudohyphal growth by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T07:01:54Z True biological_process owl:Class GO:1990494 biolink:NamedThing obsolete regulation of mitotic cytokinesis, actomyosin contractile ring assembly OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic cytokinesis, actomyosin contractile ring assembly. tmpzr1t_l9r_go_relaxed.owl regulation of mitotic cytokinesis, actomyosin contractile ring assembly This term was obsoleted at the TermGenie Gatekeeper stage. al 2014-09-25T09:04:55Z True biological_process owl:Class GO:0019675 biolink:NamedThing obsolete NAD phosphorylation and dephosphorylation OBSOLETE. The addition or removal of a phosphate group from nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. tmpzr1t_l9r_go_relaxed.owl nicotinamide adenine dinucleotide phosphorylation and dephosphorylation|NAD phosphorylation and dephosphorylation This term was made obsolete because it represents a process, NAD dephosphorylation, that does not exist. GO:0019674|GO:0006739 True biological_process owl:Class GO:0016969 biolink:NamedThing obsolete hemerythrin OBSOLETE. An oxygen carrier found in a few groups of invertebrates, e.g. sipunculid worms, certain molluscs, and crustaceans. tmpzr1t_l9r_go_relaxed.owl hemerythrin GO:0005344 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0023040 biolink:NamedThing obsolete signaling via ionic flux OBSOLETE. The process in which information is sent from one location to another, within a living organism or between living organisms, via ionic flux. tmpzr1t_l9r_go_relaxed.owl signaling via ionic flux|signalling via ionic flux This term was made obsolete because the meaning of the term is ambiguous. GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class GO:0001186 biolink:NamedThing obsolete RNA polymerase I transcription regulator recruiting activity OBSOLETE. The function of binding to an RNA polymerase I (RNAP I) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor recruiting activity|transcription factor activity, RNA polymerase I transcription factor recruiting|RNA polymerase I transcription factor recruiting transcription factor activity https://github.com/geneontology/go-ontology/issues/18561 GO:0003712 The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'. krc 2011-08-24T04:00:18Z True molecular_function owl:Class GO:0016806 biolink:NamedThing obsolete dipeptidyl-peptidase and tripeptidyl-peptidase activity OBSOLETE. Catalysis of the hydrolysis of N-terminal di- or tripeptides from a polypeptide chain. tmpzr1t_l9r_go_relaxed.owl dipeptidyl-peptidase and tripeptidyl-peptidase activity EC:3.4.14.- This term was made obsolete because it represents two activities. True molecular_function owl:Class GO:0035947 biolink:NamedThing obsolete regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of gluconeogenesis, by regulation of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of glucose biosynthetic process by regulation of transcription from Pol II promoter|regulation of glucose biosynthesis by regulation of transcription from RNA polymerase II promoter|regulation of gluconeogenesis by regulation of transcription from Pol II promoter|regulation of glucose biosynthesis by regulation of transcription from Pol II promoter|regulation of glucose biosynthetic process by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0070035 biolink:NamedThing obsolete purine NTP-dependent helicase activity OBSOLETE. Catalysis of the reaction: purine NTP + H2O = purine NDP + phosphate, to drive the unwinding of a DNA or RNA helix. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that helicases only and always use ATP (although under very specific experimental conditions GTP can perhaps be used; this is not the case in vivo), therefore this term was an unnecessary grouping term. True molecular_function owl:Class GO:0042769 biolink:NamedThing obsolete DNA damage response, detection of DNA damage OBSOLETE. The series of events required to receive a stimulus indicating DNA damage has occurred and convert it to a molecular signal. tmpzr1t_l9r_go_relaxed.owl DNA damage response, perception of DNA damage|detection of DNA damage during DNA damage response https://github.com/geneontology/go-ontology/issues/19051 This term has been obsoleted because it represents a molecular function. GO:0006281|GO:0140664|GO:0140612 True biological_process owl:Class GO:0036045 biolink:NamedThing obsolete peptidyl-lysine malonylation OBSOLETE. The addition of a malonyl group (CO-CH2-CO) to peptidyl-lysine to form N6-malonyl-L-lysine. tmpzr1t_l9r_go_relaxed.owl lysine malonylation|peptidyl-lysine malonylation GO:0044392 This term was made obsolete because it accidentally reused an exisiting id. See replacement term GO:0044392. bf 2011-12-12T09:31:42Z True biological_process owl:Class term_tracker_item biolink:NamedThing term tracker item tmpzr1t_l9r_go_relaxed.owl IAO:0000233 external True True term_tracker_item owl:AnnotationProperty GO:0051416 biolink:NamedThing obsolete myotilin binding OBSOLETE. Binding to myotilin, a structural component of the Z-discs in human skeletal and cardiac muscle. Its C-terminus contains two immunoglobulin-like domains and the unique N-terminal half has a serine-rich region, with numerous potential phosphorylation sites, and a stretch of hydrophobic amino acids. Myotilin forms homodimers and binds to alpha-actinin, F-actin, and filamin C. tmpzr1t_l9r_go_relaxed.owl myotilin binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0005376 biolink:NamedThing obsolete plasma membrane copper transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl plasma membrane copper transporter This term was made obsolete because it contains both component and function information. GO:0005375|GO:0005886 True molecular_function owl:Class GO:0000504 biolink:NamedThing obsolete proteasome regulatory particle (sensu Bacteria) OBSOLETE. A multisubunit complex that recognizes and unfolds ubiquitinated proteins, and translocates them to the core complex in an ATP dependent manner. As in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2). tmpzr1t_l9r_go_relaxed.owl 26S proteasome|proteasome regulatory particle (sensu Bacteria) This term was made obsolete because there is no ubiquitin in bacteria and they do not have proteasome regulatory particles. Instead they have proteasome-activating nucleotidase. True cellular_component owl:Class GO:0023010 biolink:NamedThing obsolete regulation of initiation of T cell receptor signaling OBSOLETE. Any process that modulates the frequency, rate or extent of the initiation of T cell receptor signaling. tmpzr1t_l9r_go_relaxed.owl regulation of initiation of T cell receptor signaling|regulation of initiation of T cell receptor signalling This term was made obsolete because the meaning of the term is ambiguous. GO:0050856 2010-02-16T09:30:50Z True biological_process owl:Class GO:1902353 biolink:NamedThing obsolete positive regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter by pheromones OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter by pheromones that results in positive regulation of induction of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl up regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter by pheromones|up-regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter by pheromones|upregulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter by pheromones This term was obsoleted because it represents a GO-CAM model. bf 2013-08-14T09:45:21Z True biological_process owl:Class GO:1903474 biolink:NamedThing obsolete anchoring of the mitotic actomyosin contractile ring to the plasma membrane OBSOLETE. A process that maintains the mitotic actinomyosin contractile ring at the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cytokinetic ring anchoring involved in mitotic cell cycle|maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle|maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle|maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle The reason for obsoletion is that this term represents a GO-CAM model. vw 2014-09-23T14:12:48Z True biological_process owl:Class GO:0030051 biolink:NamedThing obsolete FK506-sensitive peptidyl-prolyl cis-trans isomerase OBSOLETE. Interacts selectively with the immunosuppressant FK506, and possesses peptidyl-prolyl isomerase activity (catalysis of the reaction: peptidoproline (omega=180) = peptidylproline (omega=0)). tmpzr1t_l9r_go_relaxed.owl FK506-sensitive peptidyl-prolyl cis-trans isomerase|FK506 binding protein|FKBP This term was made obsolete because it represents a gene product and not a function. GO:0005528|GO:0003755 True molecular_function owl:Class GO:0019848 biolink:NamedThing obsolete conotoxin activity OBSOLETE. Acts to inhibit neural function in another organism by inhibiting voltage-gated calcium ion channels and neurotransmitter release. This function is thought to be specific to the venom of two marine snail species. tmpzr1t_l9r_go_relaxed.owl conotoxin activity This term was made obsolete because it represents a gene product. GO:0046929|GO:0019855 True molecular_function owl:Class GO:0046227 biolink:NamedThing obsolete 2,4,5-trichlorophenoxyacetic acid biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound widely used as a herbicide. tmpzr1t_l9r_go_relaxed.owl 2,4,5-trichlorophenoxyacetic acid anabolism|2,4,5-trichlorophenoxyacetic acid biosynthesis|2,4,5-trichlorophenoxyacetic acid formation|2,4,5-trichlorophenoxyacetic acid biosynthetic process|2,4,5-trichlorophenoxyacetic acid synthesis GO:0018980 This term was made obsolete because 2,4,5-trichlorophenoxyacetic acid is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0045192 biolink:NamedThing obsolete low-density lipoprotein catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of low-density lipoproteins, also known as beta lipoproteins, one of the classes of lipoproteins found in the bloodstream of animals, acting as a carrier for cholesterol and fats. tmpzr1t_l9r_go_relaxed.owl low-density lipoprotein catabolic process|LDL catabolic process|low-density lipoprotein degradation|low-density lipoprotein catabolism|LDL catabolism|low-density lipoprotein breakdown This term was made obsolete because low-density lipoprotein is a macromolecular complex, not a single class of molecule; its degradation involves the dissociation of non-covalently attached constituents as well as some breaking and reforming of covalent bonds. True biological_process owl:Class GO:1990376 biolink:NamedThing obsolete negative regulation of G1/S transition of mitotic cell cycle by positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation that results in negative regulation of mitotic G1/S transition. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it would not be used for annotation. al 2014-05-07T08:51:19Z True biological_process owl:Class GO:0085025 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by Tat complex OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Tat complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by symbiont of host morphology or physiology via protein secreted by the Tat secretion system This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:47:01Z True biological_process owl:Class GO:0018587 biolink:NamedThing obsolete limonene 8-monooxygenase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl limonene 8-monooxygenase activity GO:0019113 This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. True molecular_function owl:Class GO:0016458 biolink:NamedThing obsolete gene silencing OBSOLETE. Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22202 Wikipedia:Gene_silencing This term was obsoleted because its definition was too broad, and not distinct from 'GO:0045814 negative regulation of gene expression, epigenetic'. GO:0010629|GO:0031507 True biological_process owl:Class GO:0019575 biolink:NamedThing obsolete sucrose catabolic process, using beta-fructofuranosidase OBSOLETE. The chemical reactions and pathways resulting in the breakdown of sucrose, catalyzed by the enzyme beta-fructofuranosidase (EC:3.2.1.26). tmpzr1t_l9r_go_relaxed.owl sucrose catabolism, using beta-fructofuranosidase|sucrose degradation, using beta-fructofuranosidase|sucrose catabolic process, using beta-fructofuranosidase|sucrose breakdown, using beta-fructofuranosidase MetaCyc:SUCUTIL-PWY This term was made obsolete because beta-fructofuranosidase (also known as invertase) catalyzes the first step in multiple routes of sucrose catabolism. GO:0004564|GO:0036008 True biological_process owl:Class GO:0052188 biolink:NamedThing obsolete modification of cellular component in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a cellular component in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of cellular component in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:1905501 biolink:NamedThing obsolete heteroreceptor complex disassembly OBSOLETE. The disaggregation of a heteroreceptor complex into its constituent components. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. pad 2016-09-27T10:50:04Z True biological_process owl:Class GO:0106191 biolink:NamedThing obsolete translocase activity acting on inogranic cations linked to oxidoreductase reactions OBSOLETE. Catalysis of the translocation of inorganic cations linked to oxidoreductase reactions. tmpzr1t_l9r_go_relaxed.owl EC:7.2.1.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T16:50:07Z True molecular_function owl:Class GO:0001086 biolink:NamedThing obsolete transcription factor activity, TFIIA-class binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIA class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIIA-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. GO:0001092 krc 2010-10-28T02:14:59Z True molecular_function owl:Class GO:0090485 biolink:NamedThing obsolete chromosome number maintenance OBSOLETE. The maintenance of the standard number of chromosomes in a cell. tmpzr1t_l9r_go_relaxed.owl haploidization|diploidization The reason for obsoletion is that this term represents a phenotype, and could be captured by other terms such as GO:0007059 chromosome segregation or GO:1903467 negative regulation of mitotic DNA replication initiation. GO:1903467|GO:0007059 tb 2012-10-05T11:21:45Z True biological_process owl:Class GO:0016353 biolink:NamedThing obsolete carbamate susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl carbamate susceptibility/resistance GO:0046681 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0031614 biolink:NamedThing obsolete ER proteasome regulatory particle, lid subcomplex OBSOLETE. The subunits that form the peripheral lid of the regulatory particle of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0005928 biolink:NamedThing obsolete apical hemi-adherens junction OBSOLETE. A cell-substrate adherens junction found in the apical region of a cell, such as those found in cuticle-secreting epithelia, which connect the apical membrane to the cuticle. tmpzr1t_l9r_go_relaxed.owl apical cell-substrate adherens junction|apical dense plaque The reason for obsoletion is that this term has not been used for GO annotation at all since 2001 when it was created, it has no children, it is not a part of any subset/slim. True cellular_component owl:Class GO:0097607 biolink:NamedThing obsolete negative regulation of nuclear envelope permeability OBSOLETE. Any process that decreases the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope. tmpzr1t_l9r_go_relaxed.owl negative regulation of nuclear membrane permeability The reason for obsoletion is that the nuclear envelope is quite permeable, so there is no cellular process to regulate it. pr 2014-05-14T15:43:47Z True biological_process owl:Class GO:0023005 biolink:NamedThing obsolete signal initiation by neurotransmitter OBSOLETE. The process in which a neurotransmitter signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by neurotransmitter This term was made obsolete because the meaning of the term is ambiguous. GO:0007165|GO:0030594 2010-02-16T09:30:50Z True biological_process owl:Class RO:0002353 biolink:NamedThing output of tmpzr1t_l9r_go_relaxed.owl RO:0002353 external output_of GO:1900403 biolink:NamedThing obsolete negative regulation of cellular amino acid biosynthetic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of cellular amino acid biosynthetic process. tmpzr1t_l9r_go_relaxed.owl negative regulation of amino acid biosynthetic process by negative regulation of transcription from RNA polymerase II promoter|negative regulation of cellular amino acid synthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of cellular amino acid anabolism by negative regulation of transcription from RNA polymerase II promoter|negative regulation of cellular amino acid biosynthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of cellular amino acid formation by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2012-04-20T02:45:42Z True biological_process owl:Class GO:0009771 biolink:NamedThing obsolete primary charge separation in photosystem II OBSOLETE. Energized reaction-center P680 chlorophylls on photosystem II donate an electron to a loosely bound acceptor molecule, the quinone Q, on the stromal surface of the thylakoid membrane. The result is charge separation; a negative charge on the stromal side of the thylakoid membrane and a positive charge on the luminal side. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a mechanism, and is outside the scope of GO. True biological_process owl:Class GO:0052495 biolink:NamedThing obsolete occlusion by organism of vascular system in other organism involved in symbiotic interaction OBSOLETE. The process in which an organism reduces the flow of fluid within its second organism's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl occlusion by organism of vascular system in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0003795 biolink:NamedThing obsolete antimicrobial peptide activity OBSOLETE. Inhibits the growth of, or directly kills, microbial cells. tmpzr1t_l9r_go_relaxed.owl antimicrobial peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0019730 True molecular_function owl:Class GO:0052524 biolink:NamedThing obsolete positive regulation by organism of symbiont salicylic acid-mediated defense response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont SA-mediated defense response|induction by organism of symbiont SA-mediated defense response|positive regulation by organism of symbiont salicylic acid-mediated defense response|induction by organism of symbiont salicylic acid-mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0070321 biolink:NamedThing obsolete regulation of translation in response to nitrogen starvation OBSOLETE. Any process that modulates the frequency, rate or extent of the frequency, rate or extent of translation as a result of a stimulus indicating deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19092 This term was obsoleted because it was redundant with GO:1903832 ; regulation of cellular response to amino acid starvation. GO:1903832 True biological_process owl:Class GO:0019015 biolink:NamedThing obsolete viral genome OBSOLETE. The whole of the genetic information of a virus, contained as either DNA or RNA. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0015260 biolink:NamedThing obsolete isethionate channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl isethionate channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0006484 biolink:NamedThing obsolete protein cysteine-thiol oxidation OBSOLETE. Oxidation of two cysteine sulfhydryl groups (thiols) in one protein by a disulfide bond in a second protein to form a disulfide bond in the first protein and two reduced sulfhydryls in the second. The oxidized cysteines linked by a disulfide bond is known as cystine. tmpzr1t_l9r_go_relaxed.owl protein cysteine-thiol oxidation This term was made obsolete because it represents a single activity. GO:0003756 True biological_process owl:Class GO:0004171 biolink:NamedThing obsolete deoxyhypusine synthase activity OBSOLETE. Catalysis of the reaction: [eIF5A-precursor]-lysine + spermidine = [eIF5A-precursor]-deoxyhypusine + propane-1,3-diamine. tmpzr1t_l9r_go_relaxed.owl deoxyhypusine synthase activity|[eIF-5A]-deoxyhypusine synthase This term was made obsolete because it represents a multistep reaction. GO:0008612|GO:0034038 True molecular_function owl:Class GO:1900474 biolink:NamedThing obsolete negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of mating type switching by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-01T08:33:18Z True biological_process owl:Class GO:0075150 biolink:NamedThing obsolete regulation of receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont receptor-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0098020 biolink:NamedThing obsolete virus tail, minor subunit OBSOLETE. The part of the viral tail that comprises the least common subunit type. tmpzr1t_l9r_go_relaxed.owl bacteriophage minor protein subunit|minor tail protein The reason for obsoletion is that these are not precise structures: major (most abundant) and minor subunits of viral tails vary in different viruses/phages. bm 2012-07-19T11:36:25Z True cellular_component owl:Class GO:0072364 biolink:NamedThing obsolete regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of a cellular ketone metabolic process by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of cellular ketone metabolic process by regulation of transcription from an RNA polymerase II promoter|regulation of cellular ketone metabolism by regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:11:39Z True biological_process owl:Class GO:2000530 biolink:NamedThing obsolete positive regulation of regulation of insulin secretion involved in cellular response to glucose stimulus OBSOLETE. Any process that activates or increases the frequency, rate or extent of regulation of insulin secretion involved in cellular response to glucose stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of regulation of insulin secretion in response to glucose|positive regulation of regulation of insulin secretion involved in cellular response to glucose stimulus yaf 2011-03-24T09:27:37Z True biological_process owl:Class GO:0005204 biolink:NamedThing obsolete chondroitin sulfate proteoglycan OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl chondroitin sulphate proteoglycan|chondroitin sulfate proteoglycan This term was made obsolete because it describes the composition (i.e. proteoglycan) of a gene product, not a molecular function. True molecular_function owl:Class GO:0052357 biolink:NamedThing obsolete catabolism by host of symbiont cell wall pectin OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0044009 biolink:NamedThing obsolete viral transmission by vector OBSOLETE. The transfer of virions by means of an organism (often an insect or other animal) in order to create new infection. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it did not represent a specific process, but represented the life cycle of a virus. True biological_process owl:Class GO:0007570 biolink:NamedThing obsolete age dependent accumulation of genetic damage OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl age dependent accumulation of genetic damage This term was made obsolete because it does not describe a biological process. GO:0001301 True biological_process owl:Class GO:0006504 biolink:NamedThing obsolete C-terminal protein geranylgeranylation OBSOLETE. The covalent or non-covalent attachment of a geranylgeranyl group to the carboxy-terminus of a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein geranylgeranylation GO:0018344 This term was made obsolete because the process is not exclusive to the carboxy-terminus of a protein. True biological_process owl:Class GO:0010156 biolink:NamedThing obsolete sporocyte morphogenesis OBSOLETE. Formation and development of sporocyte, the haploid spores of angiosperms which are initiated by the differentiation of a subset of floral cells into sporocytes, which then undergo meiotic divisions to form microspores and megaspores. tmpzr1t_l9r_go_relaxed.owl sporocyte morphogenesis This term was made obsolete because it was incorrectly defined. GO:0048533 True biological_process owl:Class GO:0044142 biolink:NamedThing obsolete positive regulation of growth of symbiont on or near host surface OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-06T01:35:18Z True biological_process owl:Class GO:1990653 biolink:NamedThing obsolete monounsaturated fatty acid biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of a monounsaturated fatty acid. A monounsaturated fatty acid has one double bond in the fatty acid chain with all of the remainder carbon atoms being single-bonded, as opposed to polyunsaturated fatty acids. tmpzr1t_l9r_go_relaxed.owl For example, stearoyl-coenzyme A desaturase (Scd) catalyzes the desaturation of saturated fatty acids to monounsaturated fatty acids in mammals and yeast. hjd 2015-02-23T18:59:15Z True biological_process owl:Class GO:0009781 biolink:NamedThing obsolete photosynthetic water oxidation OBSOLETE. Processes by which a molecule of water is oxidized during photosynthesis. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle. tmpzr1t_l9r_go_relaxed.owl photosynthetic water oxidation GO:0010242 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0052411 biolink:NamedThing obsolete metabolism by organism of cell wall chitin in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving chitin in the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of cell wall chitin in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0005531 biolink:NamedThing obsolete galactose binding lectin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl galactose binding lectin This term was made obsolete because it refers to a class of gene products. GO:0007157|GO:0005534 True molecular_function owl:Class GO:0003819 biolink:NamedThing obsolete major histocompatibility complex antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl major histocompatibility complex antigen|MHC protein This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0072668 biolink:NamedThing obsolete tubulin complex biogenesis OBSOLETE. A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a tubulin complex. Includes the synthesis and folding of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. A tubulin complex is a heterodimer of tubulins alpha and beta, from which microtubules are assembled. tmpzr1t_l9r_go_relaxed.owl tubulin complex biogenesis GO:0007021 This term was obsoleted because biogenesis should only be used for complexes where synthesis of some non-protein component is necessary for assembly. mah 2011-02-14T03:25:18Z True biological_process owl:Class GO:1990219 biolink:NamedThing obsolete positive regulation by symbiont of host protein levels OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of protein levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. ml 2013-10-10T17:26:03Z True biological_process owl:Class GO:0008638 biolink:NamedThing obsolete protein tagging activity OBSOLETE. Covalent addition of a specific tagging molecule to a protein, targeting the tagged protein for some fate e.g. degradation. tmpzr1t_l9r_go_relaxed.owl protein tagging activity This term was made obsolete because it represents a biological process and a molecular function. GO:0031386|GO:0005515|GO:0006464 True molecular_function owl:Class GO:0007125 biolink:NamedThing obsolete invasive growth OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl invasive growth This term was made obsolete because it has been split into two new terms. GO:0001403|GO:0044409 True biological_process owl:Class GO:1990149 biolink:NamedThing obsolete COPI vesicle coating OBSOLETE. The addition of COPI proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat. tmpzr1t_l9r_go_relaxed.owl COPI vesicle coating This term was obsoleted at the TermGenie Gatekeeper stage because COPI vesicles are formed on Golgi membranes, and the existing term 'COPI coating of Golgi vesicle ; GO:0048205' describes this process. rb 2013-07-29T22:09:37Z True biological_process owl:Class GO:0038073 biolink:NamedThing obsolete MAP kinase kinase kinase activity involved in conjugation with cellular fusion OBSOLETE. Catalysis of the phosphorylation and activation of a MAP kinase kinase (MAPKK), as part of a MAPK signaling cascade that contributes to cell wall biogenesis. tmpzr1t_l9r_go_relaxed.owl MAPKKK activity involved in conjugation with cellular fusion|MAP3K activity involved in conjugation with cellular fusion This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:31:57Z True molecular_function owl:Class GO:0007149 biolink:NamedThing obsolete colony morphology OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl colony morphology This term was made obsolete because it describes a phenotype rather than a biological goal. True biological_process owl:Class GO:0017114 biolink:NamedThing obsolete wide-spectrum protease inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of a protease by a wide-spectrum protease inhibitor. A wide-spectrum protease inhibitor is a protein having a peptide stretch which contains specific cleavage sites for different proteinases enabling inhibition of all four classes of proteinases by formation of a covalent bond between the inhibitor and the protease. tmpzr1t_l9r_go_relaxed.owl wide-spectrum protease inhibitor activity|wide-spectrum proteinase inhibitor GO:0030414 This term was made obsolete because it represents a regulator of non-existent molecular function. True molecular_function owl:Class GO:0052408 biolink:NamedThing obsolete metabolism by host of symbiont cell wall cellulose OBSOLETE. The chemical reactions and pathways performed by an organism involving cellulose in the cell wall of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0016552 biolink:NamedThing obsolete cotranscriptional insertion or deletion editing OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place during transcription. tmpzr1t_l9r_go_relaxed.owl cotranscriptional insertion/deletion editing|cotranscriptional insertion or deletion editing This term was made obsolete because it represents two separate processes (insertion and deletion). GO:0070705|GO:0070706 True biological_process owl:Class GO:0052230 biolink:NamedThing obsolete modulation of intracellular transport in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the directed movement of substances within the cell or cells of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of intracellular trafficking in other organism|modulation of intracellular transport in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0044130 biolink:NamedThing obsolete negative regulation of growth of symbiont in host OBSOLETE. Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-04T02:42:25Z True biological_process owl:Class GO:0006774 biolink:NamedThing obsolete vitamin B12 reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vitamin B12 reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0009235|GO:0050453 True biological_process owl:Class GO:0038068 biolink:NamedThing obsolete MAP kinase kinase activity involved in cell wall organization or biogenesis OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that contributes to cell wall organization or biogenesis. tmpzr1t_l9r_go_relaxed.owl MAP kinase kinase activity involved in cell wall biogenesis|MAPKK activity involved in cell wall integrity|MAP2K activity involved in cell wall integrity This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-25T03:34:10Z True molecular_function owl:Class GO:0015040 biolink:NamedThing obsolete electron transfer flavoprotein, group I OBSOLETE. An electron transfer flavoprotein that functions as a housekeeping protein that links acyl-CoA dehydrogenase reactions with the respiratory chain, such as in the fatty acid degradation pathway. tmpzr1t_l9r_go_relaxed.owl electron transfer flavoprotein, group I GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0075014 biolink:NamedThing obsolete growth or development of symbiont on or near host rhizosphere OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development of symbiont on or near host rhizosphere True biological_process owl:Class GO:0004201 biolink:NamedThing obsolete caspase-1 activity OBSOLETE. Catalysis of the release of interleukin 1-beta by specific cleavage of Asp116-Ala117 and Asp27-Gly28 bonds in precursor. Enzymes with this function can also hydrolyze the terminal bond in the small-molecule substrate, Ac-Tyr-Val-Ala-Asp-NHMec. tmpzr1t_l9r_go_relaxed.owl caspase-1 activity|ICE GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005241 biolink:NamedThing obsolete inward rectifier channel OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inward rectifier channel This term was made obsolete because more specific terms were created. GO:0005242 True molecular_function owl:Class GO:0052012 biolink:NamedThing obsolete catabolism by symbiont of host cell wall chitin OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host cell wall chitin https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0052888 biolink:NamedThing obsolete dihydroorotate oxidase (fumarate) activity OBSOLETE. Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate. tmpzr1t_l9r_go_relaxed.owl DHOdase activity|DHodehase activity|DHOD activity|dihydroorotate dehydrogenase activity|dihydoorotic acid dehydrogenase activity|dihydroorotate oxidase (fumarate) activity|dihydroorotate oxidase activity EC:1.3.98.1|MetaCyc:RXN-9929|KEGG_REACTION:R01867 EC has determined that this reaction in fact does not exist and have withdrawn EC:1.3.3.1. Note: If fumarate is not shown to be involved, you may want to consider GO:0004152, dihydroorotate dehydrogenase activity (parent term); if the reaction involves fumarate, then use GO:0052888 dihydroorotate oxidase (fumarate) activity. Details at http://sourceforge.net/p/geneontology/ontology-requests/10770/, RHEA:30059 and EC:1.3.98 removed so as not to conflict with remapping True molecular_function owl:Class GO:0051727 biolink:NamedThing obsolete cell cycle switching, meiotic to mitotic cell cycle OBSOLETE. The process in which a cell switches cell cycle mode from meiotic to mitotic division. tmpzr1t_l9r_go_relaxed.owl conversion to mitosis|cell cycle switching, meiosis to mitosis|initiation of mitotic cell cycle|entry into mitosis|conversion to mitotic cell cycle|initiation of mitosis|cell cycle switching, meiotic to mitotic cell cycle|entry into mitotic cell cycle|mitotic entry This term was made obsolete because it does not refer to a real biological process. True biological_process owl:Class GO:0090579 biolink:NamedThing obsolete dsDNA loop formation OBSOLETE. The formation and maintenance of DNA loops that juxtapose separated regions on the same dsDNA molecule. tmpzr1t_l9r_go_relaxed.owl chromatin looping|dsDNA looping https://github.com/geneontology/go-ontology/issues/20204 This term was obsoleted because it was defined like a molecular function. GO:0140587 tb 2014-05-12T14:45:58Z True biological_process owl:Class GO:0030365 biolink:NamedThing obsolete cleavage stimulation factor activity OBSOLETE. A factor is necessary for cleavage but not for poly(A) addition in mRNA 3' end processing; can stimulate poly(A) addition on substrates with a CstF binding site upstream of the AAUAAA hexanucleotide. tmpzr1t_l9r_go_relaxed.owl cleavage stimulation factor activity|CstF GO:0005848 This term was made obsolete because it describes a cellular component. GO:0006379 True molecular_function owl:Class GO:0003716 biolink:NamedThing obsolete RNA polymerase I transcription termination factor activity OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl Pol I transcription termination factor activity|RNA polymerase I transcription termination factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006363 True molecular_function owl:Class RO:0002014 biolink:NamedThing has negative regulatory component activity tmpzr1t_l9r_go_relaxed.owl RO:0002014 external has_negative_regulatory_component_activity GO:0004195 biolink:NamedThing obsolete renin activity OBSOLETE. Catalysis of the cleavage of Leu-Xaa bond in angiotensinogen to generate angiotensin I. tmpzr1t_l9r_go_relaxed.owl renin activity|angiotensinogenase activity|angiotensin-forming enzyme activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990187 biolink:NamedThing obsolete protein localization to mRNA OBSOLETE. A process in which a protein is transported to, or maintained at mRNA. tmpzr1t_l9r_go_relaxed.owl protein localization to mRNA This term was obsoleted at the TermGenie Gatekeeper stage. rb 2013-09-11T18:19:20Z True biological_process owl:Class GO:0046894 biolink:NamedThing obsolete enzyme active site formation via S-amidino-L-cysteine OBSOLETE. Active site formation via the transient amidinylation of peptidyl-cysteine to form peptidyl-S-amidino-L-cysteine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:9148748. GO:0015068 True biological_process owl:Class GO:0052095 biolink:NamedThing obsolete formation of specialized structure for nutrient acquisition from other organism involved in symbiotic interaction OBSOLETE. The assembly by an organism of a cellular component or anatomical structure for the purpose of obtaining nutrients from a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl formation of specialized structure for nutrient acquisition from other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0046139 biolink:NamedThing obsolete coenzyme and prosthetic group catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl coenzyme and prosthetic group breakdown|coenzyme and prosthetic group catabolism|coenzyme and prosthetic group degradation|coenzyme and prosthetic group catabolic process This term was made obsolete because it was replaced by more specific terms. GO:0051190 True biological_process owl:Class GO:0052119 biolink:NamedThing obsolete negative energy taxis in host environment OBSOLETE. The directed movement of a motile cell or organism on, within or near its host organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative energy taxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:1903230 biolink:NamedThing obsolete miRNA binding involved in posttranscriptional gene silencing OBSOLETE. Any miRNA binding that is involved in posttranscriptional gene silencing. tmpzr1t_l9r_go_relaxed.owl miRNA binding involved in quelling|microRNA binding involved in quelling|microRNA binding involved in post-transcriptional gene silencing|microRNA binding involved in PTGS|miRNA binding involved in posttranscriptional gene silencing|miRNA binding involved in PTGS|microRNA binding involved in cosuppression|miRNA binding involved in cosuppression|miRNA binding involved in post-transcriptional gene silencing|microRNA binding involved in posttranscriptional gene silencing This term was obsoleted at the TermGenie Gatekeeper stage. jl 2014-07-31T10:22:18Z True molecular_function owl:Class GO:0085022 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type VI secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type VI secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:32:02Z True biological_process owl:Class GO:0052058 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via substance secreted by type IV secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type IV secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0052207 biolink:NamedThing obsolete modification of morphology or physiology of other organism via protein secreted by type III secretion system involved in symbiotic interaction OBSOLETE. The process in which an organism effects a change in the structure or function of a second organism, mediated by a substance secreted by a type III secretion system in the first organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification of morphology or physiology of other organism via protein secreted by type III secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0000284 biolink:NamedThing obsolete shmoo orientation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl shmoo orientation GO:0000753 This term was made obsolete because it is an organism specific term. The entire branch of the ontology was reorganized to be more generally applicable. True biological_process owl:Class GO:0021883 biolink:NamedThing obsolete cell cycle arrest of committed forebrain neuronal progenitor cell OBSOLETE. The process in which the cell cycle is halted during one of the normal phases (G1, S, G2, M) in a cell that has been committed to become a neuron that will reside in the forebrain. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20988 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0016637 biolink:NamedThing obsolete oxidoreductase activity, acting on the CH-CH group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or related compound, a cytochrome, an iron-sulfur protein, NAD, NADP or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-CH group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016627 True molecular_function owl:Class GO:0030161 biolink:NamedThing obsolete calpain inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue. tmpzr1t_l9r_go_relaxed.owl calpain inhibitor activity GO:0010859 This term was made obsolete because it represents a regulator of a non-existent molecular function. True molecular_function owl:Class GO:0016683 biolink:NamedThing obsolete oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, NAD, NADP or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016679 True molecular_function owl:Class GO:2000498 biolink:NamedThing obsolete regulation of induction of apoptosis in response to chemical stimulus OBSOLETE. Any process that modulates the frequency, rate or extent of induction of apoptosis in response to chemical stimulus. tmpzr1t_l9r_go_relaxed.owl regulation of induction of apoptosis in response to chemical stimulus|regulation of induction of apoptosis in response to chemical substance This term was made obsolete because it is ill-defined. yaf 2011-03-18T02:34:53Z True biological_process owl:Class GO:0046194 biolink:NamedThing obsolete pentachlorophenol biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms. tmpzr1t_l9r_go_relaxed.owl pentachlorophenol anabolism|pentachlorophenol synthesis|pentachlorophenol biosynthetic process|pentachlorophenol biosynthesis|pentachlorophenol formation GO:0018961 This term was made obsolete because pentachlorophenol is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0017028 biolink:NamedThing obsolete protein stabilization activity OBSOLETE. Strengthening of a bond between proteins. Proteins are large molecules composed of one or more chains of amino acids. The amino acids are joined in a specific order by peptide bonds. tmpzr1t_l9r_go_relaxed.owl protein stabilization activity GO:0050821 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0016650 biolink:NamedThing obsolete oxidoreductase activity, acting on the CH-NH group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or similar compound, disulfide, NAD, NADP, oxygen or a flavin. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-NH group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016645 True molecular_function owl:Class GO:0097031 biolink:NamedThing obsolete mitochondrial respiratory chain complex I biogenesis OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex I, a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. pr 2011-04-05T02:53:14Z True biological_process owl:Class GO:0046241 biolink:NamedThing obsolete m-xylene biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon. tmpzr1t_l9r_go_relaxed.owl meta-xylene biosynthesis|m-xylene biosynthesis|meta-xylene biosynthetic process|m-xylene synthesis|m-xylene anabolism|m-xylene formation|m-xylene biosynthetic process GO:0018949 This term was made obsolete because m-xylene is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0008019 biolink:NamedThing obsolete macrophage receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl macrophage receptor activity This term was made obsolete because its name is ambiguous, and it was never defined. GO:0038187|GO:0005044 True molecular_function owl:Class GO:0102132 biolink:NamedThing obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxypimeloyl-[acp] methyl ester <=> NADPH + H+ + a 3-oxo-pimeloyl-[acp] methyl ester. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21876 This term was obsoleted because it represents a specific substrate, and is beyond the specificity of GO. GO:0004316 True molecular_function owl:Class GO:0005074 biolink:NamedThing obsolete inhibitory SMAD protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl inhibitory SMAD protein This term was made obsolete because it names a family of gene products. True molecular_function owl:Class GO:0075115 biolink:NamedThing obsolete modulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the symbiont modulates the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by symbiont of host transmembrane receptor-mediated cAMP signaling The reason for obsoletion is that there is no evidence that this process exists. True biological_process owl:Class GO:0052523 biolink:NamedThing obsolete positive regulation by organism of symbiont programmed cell death OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont programmed cell death|enhancement or induction of symbiont programmed cell death This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005888 biolink:NamedThing obsolete proteoglycan integral to plasma membrane OBSOLETE. Penetrating at least one phospholipid bilayer of a plasma membrane and consisting of proteoglycan. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer. tmpzr1t_l9r_go_relaxed.owl proteoglycan integral to plasma membrane GO:0005887 This term was made obsolete because it describes the composition (i.e. proteoglycan) and not the location of a gene product. True cellular_component owl:Class GO:1990479 biolink:NamedThing obsolete response to lipoic acid OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoic acid stimulus. tmpzr1t_l9r_go_relaxed.owl response to 5-(1,2-dithiolan-3-yl)pentanoic acid This term was obsoleted at the TermGenie Gatekeeper stage. sl 2014-09-09T22:20:41Z True biological_process owl:Class GO:0075234 biolink:NamedThing obsolete zoospore movement on or near host OBSOLETE. Any process involved in the directed movement of a zoospore on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl zoospore motility on or near host This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0085023 biolink:NamedThing obsolete modification by symbiont of host morphology or physiology via protein secreted by type VII secretion system OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type VII secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-07-09T03:35:02Z True biological_process owl:Class GO:0002146 biolink:NamedThing obsolete steroid hormone receptor import into nucleus OBSOLETE. The directed movement of a steroid hormone receptor into the nucleus. tmpzr1t_l9r_go_relaxed.owl steroid hormone receptor nuclear translocation The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606|GO:0042306 hjd 2009-07-09T02:34:42Z True biological_process owl:Class GO:0016734 biolink:NamedThing obsolete molybdenum-iron nitrogenase activity OBSOLETE. Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + N2 + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate. tmpzr1t_l9r_go_relaxed.owl molybdenum-iron nitrogenase activity This term was made obsolete because it represents a cellular component. GO:0016612|GO:0016163 True molecular_function owl:Class GO:0008341 biolink:NamedThing obsolete response to cocaine (sensu Insecta) OBSOLETE. A change in state or activity of a mature individual as the result of a cocaine stimulus. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557). tmpzr1t_l9r_go_relaxed.owl response to cocaine (sensu Insecta) This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term. GO:0048148 True biological_process owl:Class GO:0006125 biolink:NamedThing obsolete thioredoxin pathway OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl thioredoxin pathway|thioredoxin reduction MetaCyc:THIOREDOX-PWY This term was made obsolete because it is not clear what it is intended to represent. GO:0045454 True biological_process owl:Class GO:0008133 biolink:NamedThing obsolete collagenase activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl collagenase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0008166 biolink:NamedThing obsolete viral replication OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl viral replication This term was made obsolete because it covers multiple processes and is now covered by more specific terms. GO:0019079 True biological_process owl:Class GO:0021864 biolink:NamedThing obsolete radial glial cell division in forebrain OBSOLETE. The mitotic division of radial glial cells in the developing forebrain. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0003797 biolink:NamedThing obsolete antibacterial peptide activity OBSOLETE. Inhibits the growth of, or directly kills, bacterial cells. tmpzr1t_l9r_go_relaxed.owl antibacterial peptide activity This term was made obsolete because it describes involvement in a process and not a function. GO:0042742 True molecular_function owl:Class RO:0000056 biolink:NamedThing participates_in tmpzr1t_l9r_go_relaxed.owl RO:0000056 external participates_in OIO:hasScope biolink:NamedThing has_scope tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0008018 biolink:NamedThing obsolete structural protein of chorion (sensu Drosophila) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl structural protein of chorion (sensu Drosophila) GO:0005213 This term was made obsolete because the function is covered by a parent term. True molecular_function owl:Class GO:0075164 biolink:NamedThing obsolete negative regulation of G-protein beta subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont G-protein beta subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont G-protein beta subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0007240 biolink:NamedThing obsolete nuclear translocation of Hog1 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl nuclear translocation of Hog1 This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:0006155 biolink:NamedThing obsolete adenosine deaminase reaction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl adenosine deaminase reaction GO:0004000 This term was made obsolete because it represents a molecular function. True biological_process owl:Class GO:0000185 biolink:NamedThing obsolete activation of MAPKKK activity OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase (MAPKKK). tmpzr1t_l9r_go_relaxed.owl activation of MAP3K activity|positive regulation of MAP kinase kinase kinase activity|activation of MAP kinase kinase kinase|activation of MAPKKK activity during sporulation|positive regulation of MAPKKK activity https://github.com/geneontology/go-ontology/issues/21307 This term was obsoleted because it represents a molecular function. GO:0000165|GO:0043539 True biological_process owl:Class GO:0017027 biolink:NamedThing obsolete transmembrane receptor protein serine/threonine kinase receptor-associated protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein serine/threonine kinase receptor-associated protein activity This term was made obsolete because it represents a gene product and not a molecular function. GO:0005102|GO:0005515 True molecular_function owl:Class GO:0052514 biolink:NamedThing obsolete positive regulation by organism of symbiont inflammatory response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the inflammatory response of a symbiont organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont inflammatory response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0003902 biolink:NamedThing obsolete DNA-directed RNA polymerase III activity OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). tmpzr1t_l9r_go_relaxed.owl DNA-directed RNA polymerase III activity GO:0003899 This term was made obsolete because it represents the specific complex represented by the cellular component term 'DNA-directed RNA polymerase III complex ; GO:0005666'. True molecular_function owl:Class GO:0006410 biolink:NamedThing obsolete transcription, RNA-dependent OBSOLETE. The cellular synthesis of DNA on a template of RNA. tmpzr1t_l9r_go_relaxed.owl transcription, RNA-dependent This term was obsoleted because the name and the definition mean two completely different things: 1) "transcription, RNA-dependent", i.e. RNA-dependent production of an RNA transcript and 2) "reverse transcription", i.e. RNA-dependent DNA synthesis. True biological_process owl:Class GO:0044825 biolink:NamedThing obsolete retroviral strand transfer activity OBSOLETE. Catalysis of the covalent insertion of processed 3'-viral DNA ends into host chromosomal DNA by a trans-esterification reaction. tmpzr1t_l9r_go_relaxed.owl strand transfer reaction https://github.com/geneontology/go-ontology/issues/21721 This term was obsoleted because it represents part of an activity. GO:0044823 jl 2014-02-04T15:16:39Z True molecular_function owl:Class GO:0016943 biolink:NamedThing obsolete RNA polymerase I transcription elongation factor activity OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase I following transcription initiation. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription elongation factor activity|Pol I transcription elongation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006362 True molecular_function owl:Class GO:2001275 biolink:NamedThing obsolete positive regulation of glucose import in response to insulin stimulus OBSOLETE. Any process that activates or increases the frequency, rate or extent of glucose import in response to insulin stimulus. tmpzr1t_l9r_go_relaxed.owl positive regulation of cellular glucose import in response to insulin stimulus https://github.com/geneontology/go-ontology/issues/15961 This term was obsoleted because it represents a GO-CAM model. vk 2011-12-13T12:29:43Z True biological_process owl:Class GO:0008846 biolink:NamedThing obsolete endopeptidase La activity OBSOLETE. Catalysis of the hydrolysis of large proteins such as globin, casein and denatured serum albumin, in presence of ATP. tmpzr1t_l9r_go_relaxed.owl ATP-dependent protease La activity|PIM1 protease activity|gene lon protease activity|protease La|gene lon proteins|ATP-dependent serine proteinase activity|Escherichia coli serine proteinase La|lon proteinase|PIM1 proteinase activity|endopeptidase La activity|ATP-dependent lon proteinase|proteinase La|serine protease La|Escherichia coli proteinase La GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0017135 biolink:NamedThing obsolete membrane-associated protein with guanylate kinase activity interacting OBSOLETE. The interaction with synapse-associated membrane-associated protein with guanylate kinase activity. tmpzr1t_l9r_go_relaxed.owl membrane-associated protein with guanylate kinase activity interacting This term was made obsolete because it does not represent a molecular function and the term name appears to make no sense. GO:0019899 True molecular_function owl:Class GO:0006832 biolink:NamedThing obsolete small molecule transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small molecule transport This term was made obsolete because it was an unnecessary grouping term. GO:0006810 True biological_process owl:Class GO:0006918 biolink:NamedThing obsolete induction of apoptosis by p53 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl induction of apoptosis by p53 This term was made obsolete because more accurate terms were created. GO:0006915 True biological_process owl:Class GO:0045757 biolink:NamedThing obsolete negative regulation of actin polymerization and/or depolymerization OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of actin polymerization and/or depolymerization. tmpzr1t_l9r_go_relaxed.owl negative regulation of actin polymerization and/or depolymerization This term was made obsolete because it has been split. GO:0030835|GO:0030837 True biological_process owl:Class GO:0052540 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont cell wall thickening OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of symbiont defensive cell wall thickening|positive regulation by organism of defense-related symbiont cell wall thickening This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0098767 biolink:NamedThing obsolete meiosis II M phase OBSOLETE. M phase during meiosis II. tmpzr1t_l9r_go_relaxed.owl Obsoleted because added in error. GO:0098762 True biological_process owl:Class GO:0052313 biolink:NamedThing obsolete modulation of nutrient release from other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of nutrient release from other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class OIO:hasNarrowSynonym biolink:NamedThing has_narrow_synonym tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0035957 biolink:NamedThing obsolete positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of the breakdown of starch, by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl positive regulation of starch degradation by regulation of transcription from Pol II promoter|positive regulation of starch catabolism by regulation of transcription from RNA polymerase II promoter|positive regulation of starch catabolism by regulation of transcription from Pol II promoter|positive regulation of starch degradation by regulation of transcription from RNA polymerase II promoter|positive regulation of starch catabolic process by regulation of transcription from Pol II promoter|positive regulation of starch breakdown by regulation of transcription from Pol II promoter|positive regulation of starch breakdown by regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. bf True biological_process owl:Class GO:0009367 biolink:NamedThing obsolete prepilin peptidase complex OBSOLETE. An enzyme complex that catalyzes the cleavage of a Gly-Phe bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group. tmpzr1t_l9r_go_relaxed.owl prepilin peptidase complex This term was made obsolete because prepilin peptidase is a single gene product, and there is no evidence that it acts as a multimer. True cellular_component owl:Class GO:0045319 biolink:NamedThing obsolete SRP-independent cotranslational protein-membrane targeting, translocation OBSOLETE. The process during cotranslational membrane targeting wherein proteins move across a membrane. This process is independent of SRP and signal recognition. tmpzr1t_l9r_go_relaxed.owl SRP-independent cotranslational protein-membrane targeting, translocation|SRP-independent cotranslational membrane targeting, translocation This term was made obsolete because there is no evidence for the existence of this process. True biological_process owl:Class GO:0004927 biolink:NamedThing obsolete sevenless receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl sevenless receptor activity This term was made obsolete because it represents a gene product rather than an activity. GO:0004714|GO:0008288|GO:0004888 True molecular_function owl:Class GO:0017094 biolink:NamedThing obsolete sterol regulatory element-binding protein site 1 protease activity OBSOLETE. Catalysis of the cleavage of a Leu-Ser bond within the luminal loop of a sterol regulatory element binding protein (SREBP). This activity is the first of two sequential cleavage reactions and cleaves SREBP into two membrane-bound halves. tmpzr1t_l9r_go_relaxed.owl SREBP site 1 protease activity|sterol regulatory element-binding protein site 1 protease activity GO:0008236 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1900410 biolink:NamedThing obsolete regulation of histone modification by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of histone modification. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. mah 2012-04-20T03:35:08Z True biological_process owl:Class GO:0015096 biolink:NamedThing obsolete manganese resistance permease activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl manganese resistance permease activity This term was made obsolete because the term is undefined and we don't know the mechanism so we can't make a correct definition. True molecular_function owl:Class GO:1902588 biolink:NamedThing obsolete multi-organism plasmodesmata-mediated intercellular transport OBSOLETE. A plasmodesmata-mediated intercellular transport which involves another organism. tmpzr1t_l9r_go_relaxed.owl multi organism plasmodesmata-mediated intercellular transport This term was obsoleted because there is no evidence that this process exists. jl 2013-12-19T13:37:53Z True biological_process owl:Class GO:1904945 biolink:NamedThing obsolete response to cobalt(II) acetate OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt(II) acetate stimulus. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. mr 2016-02-02T16:47:52Z True biological_process owl:Class GO:0008576 biolink:NamedThing obsolete vesicle-fusing ATPase activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP by an AAA-ATPase, involved in the heterotypic fusion of membrane vesicles with target membranes and the homotypic fusion of various membrane compartments. tmpzr1t_l9r_go_relaxed.owl vesicle-fusing ATPase activity GO:0016887 This term was made obsolete because it incorporates process information. GO:0016192|GO:0061025 True molecular_function owl:Class GO:1905160 biolink:NamedThing obsolete positive regulation of Factor XII activation OBSOLETE. Any process that activates or increases the frequency, rate or extent of Factor XII activation. tmpzr1t_l9r_go_relaxed.owl upregulation of Hageman factor activation|up regulation of Factor XII activation|up-regulation of Hageman factor activation|positive regulation of Hageman factor activation|up-regulation of Factor XII activation|activation of Hageman factor activation|activation of Factor XII activation|up regulation of Hageman factor activation|upregulation of Factor XII activation This term was accidentally approved after TermGenie review. It should not have been approved. sl 2016-04-19T23:03:43Z True biological_process owl:Class GO:0071778 biolink:NamedThing obsolete WINAC complex OBSOLETE. A SWI/SNF-type complex that directly interacts with the vitamin D receptor (VDR) through the Williams syndrome transcription factor (WSTF), and mediates the recruitment of unliganded VDR to VDR target sites in promoters. The WINAC complex contains at least 13 subunits, including WSTF, several SWI/SNF components, and DNA replication-related factors. tmpzr1t_l9r_go_relaxed.owl WINAC complex This term was made obsolete because the paper describing the characterization of this complex, which was used to create this term, has been retracted. mah 2010-08-31T12:19:54Z True cellular_component owl:Class GO:0060796 biolink:NamedThing obsolete regulation of transcription involved in primary germ layer cell fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in cells adopting an endoderm, ectoderm or mesoderm cell fate. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0060795|GO:0006357 dph 2009-08-04T03:40:21Z True biological_process owl:Class GO:0018128 biolink:NamedThing obsolete peptidyl-serine cyclase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peptidyl-serine cyclase activity EC:4.2.1.- This term was made obsolete because there is no record of why it was added, and no evidence can be found to suggest that this activity exists. True molecular_function owl:Class GO:0010870 biolink:NamedThing obsolete positive regulation of receptor biosynthetic process OBSOLETE. Any process that increases the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0036095 biolink:NamedThing obsolete positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of invasive growth as a result of deprivation of glucose, by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl transcriptional activation of genes involved in invasive growth This term was obsoleted because it represents a GO-CAM model. bf 2012-01-24T10:53:28Z True biological_process owl:Class GO:0001307 biolink:NamedThing obsolete extrachromosomal circular DNA accumulation involved in replicative cell aging OBSOLETE. Increase in abundance of circular DNA molecules in dividing cells as they age. These molecules originate in the chromosome but are excised and circularized, often by intramolecular homologous recombination between direct tandem repeats, and then replicated independently of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl extrachromosomal circular DNA accumulation during replicative cell ageing|extrachromosomal circular DNA accumulation during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0008636 biolink:NamedThing obsolete activation of caspase activity by protein phosphorylation OBSOLETE. Upregulation of the activity of a caspase, a group of cysteine proteases involved in apoptosis, by the addition of a phosphate group. tmpzr1t_l9r_go_relaxed.owl caspase activation via phosphorylation|activation of caspase activity by protein amino acid phosphorylation|activation of caspase activity by protein phosphorylation This term was made obsolete because it is ill-defined: phosphorylation regulates the activity of caspases, but it doesn't activate them (caspases are only activated upon cleavage). True biological_process owl:Class GO:0007583 biolink:NamedThing obsolete killer activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl killer activity This term was made obsolete because it is ambiguous; 'killer activity' could refer to several different processes. GO:0042267 True biological_process owl:Class GO:0052478 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont cell wall callose deposition OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont cell wall callose deposition This term was made obsolete because it does not represent a valid biological process that occurs in nature. True biological_process owl:Class GO:0045565 biolink:NamedThing obsolete negative regulation of TRAIL receptor 1 biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 1. tmpzr1t_l9r_go_relaxed.owl negative regulation of TRAIL receptor 1 synthesis|down-regulation of TRAIL receptor 1 biosynthetic process|negative regulation of TRAIL receptor 1 formation|inhibition of TRAIL receptor 1 biosynthetic process|downregulation of TRAIL receptor 1 biosynthetic process|negative regulation of TRAIL receptor 1 anabolism|negative regulation of TRAIL receptor 1 biosynthesis|down regulation of TRAIL receptor 1 biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0007336 biolink:NamedThing obsolete bilateral process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bilateral process This term was made obsolete because it gives no indication of what it refers to. True biological_process owl:Class GO:0010546 biolink:NamedThing obsolete Hsp90 protein inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the Hsp90 molecular chaperone. tmpzr1t_l9r_go_relaxed.owl Hsp90 protein inhibitor activity GO:0051879 This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp90 protein activity'. GO:0051787|GO:0006457|GO:0051082 True molecular_function owl:Class GO:0003800 biolink:NamedThing obsolete antiviral response protein activity OBSOLETE. A protein involved in an antiviral response. tmpzr1t_l9r_go_relaxed.owl antiviral response protein activity This term was made obsolete because it refers to involvement in a biological process. GO:0009615 True molecular_function owl:Class GO:0001168 biolink:NamedThing obsolete transcription factor activity, RNA polymerase I upstream control element sequence-specific binding OBSOLETE. Binding to a upstream control element (UCE, or alternately referred to as the upstream element, UE), a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase I in order to modulate transcription by RNA polymerase I. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity https://github.com/geneontology/go-ontology/issues/15787 This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2011-02-03T04:10:23Z True molecular_function owl:Class GO:0001082 biolink:NamedThing obsolete transcription factor activity, RNA polymerase I transcription factor binding OBSOLETE. Binding to an RNA polymerase I transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. tmpzr1t_l9r_go_relaxed.owl RNA polymerase I transcription factor binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. krc 2010-10-27T04:03:47Z True molecular_function owl:Class GO:1901574 biolink:NamedThing obsolete chemical substance biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of chemical substance. tmpzr1t_l9r_go_relaxed.owl chemical substance anabolism|chemical substance biosynthesis|chemical substance biosynthetic process|chemical substance formation|chemical substance synthesis This term was obsoleted at the TermGenie Gatekeeper stage. pr 2012-11-04T18:10:40Z True biological_process owl:Class GO:0052113 biolink:NamedThing obsolete adaptation to host osmotic environment OBSOLETE. The responsive adjustment of an organism to the osmotic conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl adaptation to host osmotic environment|osmotic tolerance to host environment This term was made obsolete because adaptation was not deemed to be a valid biological process. True biological_process owl:Class GO:1903152 biolink:NamedThing obsolete copper ion transmembrane transporter activity involved in copper ion import into cell OBSOLETE. Any copper ion transmembrane transporter activity that is involved in copper ion import into cell. tmpzr1t_l9r_go_relaxed.owl intracellular copper ion transporter involved in copper cation import into cell|copper ion transmembrane transporter activity involved in copper cation import into cell|copper ion transmembrane transporter activity involved in copper ion import into cell|plasma membrane copper transporter involved in copper ion import into cell|plasma membrane copper transporter involved in copper cation import into cell|intracellular copper ion transporter involved in copper ion import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:47Z True molecular_function owl:Class GO:0023054 biolink:NamedThing obsolete signal initiation by stretch effect OBSOLETE. The process in which a stretch signal causes activation of a receptor. tmpzr1t_l9r_go_relaxed.owl signal initiation by stretch effect This term was made obsolete because the meaning of the term is ambiguous. GO:0038023|GO:0007165 2010-02-16T09:30:50Z True biological_process owl:Class GO:1900411 biolink:NamedThing obsolete regulation of histone acetylation by regulation of transcription from RNA polymerase II promoter OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of histone acetylation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it describes a process that does not exist. mah 2012-04-20T03:35:22Z True biological_process owl:Class GO:0009478 biolink:NamedThing obsolete cytochrome c554 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytochrome c554 This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0075334 biolink:NamedThing obsolete modulation of symbiont adenylate cyclase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its adenylate cyclase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21740 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0009400 biolink:NamedThing obsolete signal transducer, downstream of receptor, with serine/threonine phosphatase activity OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. tmpzr1t_l9r_go_relaxed.owl receptor signaling protein serine/threonine phosphatase activity|receptor signalling protein serine/threonine phosphatase activity https://github.com/geneontology/go-ontology/issues/14232 This term was obsoleted because it was not clearly defined. True molecular_function owl:Class GO:0017063 biolink:NamedThing obsolete phosphatidylserine-specific phospholipase A1 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 2-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl phosphatidylserine-specific phospholipase A1 activity This term was made obsolete because the definition does not match the term name. GO:0052740|GO:0052739 True molecular_function owl:Class GO:0006135 biolink:NamedThing obsolete dihydropteridine reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydropteridine reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051067|GO:0004155|GO:0022900 True biological_process owl:Class GO:0046791 biolink:NamedThing obsolete suppression by virus of host complement neutralization OBSOLETE. Any viral process that results in the inhibition of complement neutralization of the host cell. tmpzr1t_l9r_go_relaxed.owl negative regulation by virus of host complement neutralization|suppression by virus of host complement neutralization This term was made obsolete because the meaning of the term is unclear. It most likely refers to inhibiting the process by which a virus particle is neutralized by the host cell in a complement-dependent manner. True biological_process owl:Class GO:0051846 biolink:NamedThing obsolete active evasion of symbiont immune response OBSOLETE. Any mechanism of immune avoidance that directly affects the symbiont immune system, e.g. blocking any stage in symbiont MHC class I and II presentation. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl active evasion of symbiont immune response|active immune evasion This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:0015534 biolink:NamedThing obsolete proline/glycine/betaine:hydrogen/sodium symporter activity OBSOLETE. Catalysis of the reaction: (proline, glycine or betaine)(out) + (H+ or Na+)(out) = (proline, glycine or betaine)(in) + (H+ or Na+)(in). tmpzr1t_l9r_go_relaxed.owl proline/glycine/betaine:hydrogen/sodium symporter activity|proline/glycine/betaine:proton/sodium symporter This term was made obsolete because it represents a multifunctional gene product. GO:0015187|GO:0015370|GO:0015295|GO:0015193|GO:0015199|GO:0015294 True molecular_function owl:Class GO:0030088 biolink:NamedThing obsolete PSII associated light-harvesting complex II, core complex, LHCIId subcomplex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl PSII associated light-harvesting complex II, core complex, LHCIId subcomplex GO:0009655 This term was made obsolete because the 'complex' it refers to contains only one gene product. True cellular_component owl:Class GO:1990445 biolink:NamedThing obsolete Multiciliate cell differentiation OBSOLETE. The process in which a relatively unspecialized cell acquires features of a multiciliated cell, a specialized epithelial cell type that extends anywhere from 150 to 200 motile cilia per cell in order to produce a vigorous fluid flow critical to human health in several organ systems. tmpzr1t_l9r_go_relaxed.owl Multiciliate cell differentiation This term was obsoleted at the TermGenie Gatekeeper stage. sp 2014-08-05T14:31:28Z True biological_process owl:Class GO:0005193 biolink:NamedThing obsolete major urinary protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl major urinary protein This term was made obsolete because it describes presence in body fluids rather than an activity. True molecular_function owl:Class GO:0043745 biolink:NamedThing obsolete N2-acetyl-L-aminoadipate semialdehyde dehydrogenase activity OBSOLETE. Catalysis of the reaction: N2-acetyl-L-aminoadipyl-delta-phosphate + NADPH + H+ = N2-acetyl-L-aminoadipate semialdehyde + NADP+ + orthophosphate. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18908 This term was obsoleted because there is no evidence that it exists. True molecular_function owl:Class GO:0005625 biolink:NamedThing obsolete soluble fraction OBSOLETE. That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water. tmpzr1t_l9r_go_relaxed.owl soluble fraction|soluble This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0005575 True cellular_component owl:Class GO:0046303 biolink:NamedThing obsolete 2-nitropropane biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-nitropropane, a clear, colorless liquid with a mild, fruity odor. tmpzr1t_l9r_go_relaxed.owl 2-nitropropane synthesis|2-nitropropane formation|2-nitropropane biosynthetic process|2-nitropropane anabolism|2-nitropropane biosynthesis GO:0018938 This term was made obsolete because 2-nitropropane is not synthesized by living organisms, and GO does not cover non-biological processes. True biological_process owl:Class GO:0075236 biolink:NamedThing obsolete positive regulation of zoospore movement on or near host OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of zoospore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0006988 biolink:NamedThing obsolete unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor This term was made obsolete because it represents a function rather than a process. GO:0004521 True biological_process owl:Class GO:0016834 biolink:NamedThing obsolete other carbon-carbon lyase activity OBSOLETE. A grouping term for carbon-carbon lyases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl other carbon-carbon lyase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016830 True molecular_function owl:Class GO:0031608 biolink:NamedThing obsolete ER proteasome core complex, beta-subunit complex OBSOLETE. The subunits forming the inner ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0015522 biolink:NamedThing obsolete hydrophobic uncoupler:proton antiporter activity OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hydrophobic uncoupler(in) + H+(out) = hydrophobic uncoupler(out) + H+(in). Hydrophobic uncouplers include CCCP, benzalkonium and SDS. tmpzr1t_l9r_go_relaxed.owl hydrophobic uncoupler:hydrogen antiporter activity The reason for obsoletion is that this term represented a specific protein in TCDB, 2.A.1.2.9, which actually is a sugar transporter that seems to also function as a multidrug efflux protein. True molecular_function owl:Class GO:0000203 biolink:NamedThing obsolete activation of MAPKKK during sporulation (sensu Saccharomyces) OBSOLETE. Upregulation of MAPKKK activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl activation of MAPKKK during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0062198 biolink:NamedThing obsolete rDNA replication pause site heterochromatin OBSOLETE. A region of heterochromatin associated with sites in rDNA repeats where replication forks pause. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19178 This term was obsoleted because it does not represent a specific cellular component. dph 2019-12-11T20:32:24Z True cellular_component owl:Class GO:0019132 biolink:NamedThing obsolete C-terminal processing peptidase activity OBSOLETE. Catalysis of the cleavage of peptides after specific recognition of a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr, and Zaa is preferably Ala. Cleavage is at a variable distance from the C-terminus; a typical cleavage is -Ala-Ala-Arg-Ala-Ala-Lys-Glu-Asn-Tyr-Ala-Leu-Ala-Ala. tmpzr1t_l9r_go_relaxed.owl tail-specific protease activity|photosystem II D1 protein processing peptidase|C-terminal processing peptidase activity|Tsp protease|protease Re|CtpA gene product (Synechocystis sp.) GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0023012 biolink:NamedThing obsolete initiation of T cell receptor signaling by binding of a MHC complex to T cell receptor OBSOLETE. The process in which binding of an MHC complex to T cell receptor causes activation of T cell receptor signaling. tmpzr1t_l9r_go_relaxed.owl initiation of T cell receptor signalling by binding of a MHC complex to T cell receptor|initiation of T cell receptor signaling by binding of a MHC complex to T cell receptor This term was made obsolete because it is describing a binding molecular function. GO:0050852|GO:0042101 2010-02-16T09:30:50Z True biological_process owl:Class OIO:source biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0009457 biolink:NamedThing obsolete flavodoxin OBSOLETE. A group of small electron carriers, characteristic of anaerobic bacteria, photosynthetic bacteria, cyanobacteria and eukaryotic algae. Contain flavin mononucleotide. tmpzr1t_l9r_go_relaxed.owl flavodoxin GO:0009055 This term was made obsolete because it represents a class of gene products. True molecular_function owl:Class GO:0044216 biolink:NamedThing obsolete other organism cell OBSOLETE. A cell of a secondary organism with which the first organism is interacting. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19036|https://github.com/geneontology/go-ontology/issues/17394 This term was obsoleted because cell (and therefore 'other organism cell') was considered outside the scope of GO. jl 2009-11-12T01:17:06Z True cellular_component owl:Class GO:1990815 biolink:NamedThing obsolete regulation of protein localization to cell division site after cytokinesis OBSOLETE. Any process that modulates the frequency, rate or extent of protein localization to cell division site involved in cell separation after cytokinesis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. vw 2015-07-29T14:03:34Z True biological_process owl:Class GO:0052420 biolink:NamedThing obsolete metabolism by host of symbiont xylan OBSOLETE. The chemical reactions and pathways performed by an organism involving xylan within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because there is no evidence it exists. True biological_process owl:Class GO:0019040 biolink:NamedThing obsolete viral host shutoff protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl viral host shutoff protein This term was made obsolete because it does not represent a molecular function. GO:0004534|GO:0019057 True molecular_function owl:Class GO:0016986 biolink:NamedThing obsolete transcription initiation factor activity OBSOLETE. Plays a role in regulating transcription initiation. tmpzr1t_l9r_go_relaxed.owl transcriptional initiation factor activity|transcription initiation factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0140223 True molecular_function owl:Class GO:0001753 biolink:NamedThing obsolete adult eye photoreceptor development (sensu Drosophila) OBSOLETE. Development of a photoreceptor, a receptor that responds to light, in the adult Drosophila eye. tmpzr1t_l9r_go_relaxed.owl adult eye photoreceptor development (sensu Drosophila) This term was made obsolete because eye photoreceptors have completed their development by the time the adult phase begins. GO:0042051 True biological_process owl:Class GO:0016355 biolink:NamedThing obsolete DDT susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DDT susceptibility/resistance GO:0046680 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0075165 biolink:NamedThing obsolete regulation of G-protein gamma subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its G-protein gamma subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont G-protein gamma subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0047944 biolink:NamedThing obsolete glutamate 1-kinase activity OBSOLETE. Catalysis of the reaction: L-glutamate + ATP = alpha-L-glutamyl phosphate + ADP + H(+). tmpzr1t_l9r_go_relaxed.owl ATP:L-glutamate 1-phosphotransferase activity This term is slated for obsoletion. RHEA indicates the activity has been shown not to exist. True molecular_function owl:Class GO:1900524 biolink:NamedThing obsolete positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that activates or increases the frequency, rate or extent of flocculation via cell wall protein-carbohydrate interaction process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl upregulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter|activation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter|up regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter|up-regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM. dgf 2012-05-03T05:13:41Z True biological_process owl:Class GO:0052106 biolink:NamedThing obsolete quorum sensing involved in interaction with host OBSOLETE. The process in which a community of single-celled organisms living in intimate contact with a host organism monitors population density by detecting the concentration of small diffusible signal molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl quorum sensing during interaction with host The reason for obsoletion is that this term was not clearly defined and usage was inconsistent. True biological_process owl:Class GO:0052221 biolink:NamedThing obsolete positive chemotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a chemical on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive chemotaxis in response to environment of other organism|positive chemotaxis in environment of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0030489 biolink:NamedThing obsolete processing of 27S pre-rRNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl processing of 27S pre-rRNA This term was made obsolete because it was not defined and did not correspond to the production of a single specific mature rRNA product. True biological_process owl:Class GO:0004286 biolink:NamedThing obsolete proprotein convertase 2 activity OBSOLETE. Catalysis of the release of protein hormones and neuropeptides from their precursors, generally by cleavage of -Lys-Arg-Xaa at the Arg-Xaa bond. tmpzr1t_l9r_go_relaxed.owl NEC 2 activity|PC2 activity|prohormone convertase II activity|neuroendocrine convertase 2 activity|proprotein convertase 2 activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0015358 biolink:NamedThing obsolete amino acid/choline transmembrane transporter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl amino acid/choline transmembrane transporter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015220|GO:0015171 True molecular_function owl:Class GO:0052122 biolink:NamedThing obsolete negative aerotaxis in host environment OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative aerotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0004007 biolink:NamedThing obsolete heavy metal-exporting ATPase activity OBSOLETE. Catalysis of the reaction: heavy metal ion(in) + ATP + H2O = heavy metal ion(out) + ADP + phosphate. tmpzr1t_l9r_go_relaxed.owl heavy metal-exporting ATPase activity This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). GO:0046873 True molecular_function owl:Class GO:0003080 biolink:NamedThing obsolete negative regulation of natriuresis OBSOLETE. Any process that stops, prevents, or decreases the frequency, rate, or extent of natriuresis, the process of renal sodium excretion. tmpzr1t_l9r_go_relaxed.owl negative regulation of natriuresis This term was made obsolete because its definition was inaccurate. GO:0035814 True biological_process owl:Class GO:0005627 biolink:NamedThing obsolete ascus OBSOLETE. A sac-like fruiting body (ascomycete Fungi); contains ascospores (typically eight in number). tmpzr1t_l9r_go_relaxed.owl ascus This term was made obsolete because it is a structure that contains cell (ascospores) rather than a cellular component. To update annotations, consider the external ontology term 'ascus ; FAO:0000014'. True cellular_component owl:Class GO:0004262 biolink:NamedThing obsolete cerevisin activity OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity, and of BZ-Arg-OET > Ac-Tyr-OET. Does not hydrolyze peptide amides. tmpzr1t_l9r_go_relaxed.owl baker's yeast proteinase B|peptidase beta|brewer's yeast proteinase|cerevisin activity|proteinase yscB activity|yeast proteinase B activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003378 biolink:NamedThing obsolete regulation of inflammatory response by sphingosine-1-phosphate signaling pathway OBSOLETE. A sphingosine-1-phosphate signaling pathway that modulates the rate, frequency, or extent of the inflammatory response. tmpzr1t_l9r_go_relaxed.owl regulation of inflammatory response by sphingolipid signaling pathway|regulation of inflammatory response by sphingolipid signalling pathway The reason for obsoletion is that this term represents a GO-CAM model. dph 2009-12-09T06:38:06Z True biological_process owl:Class GO:0004986 biolink:NamedThing obsolete delta-opioid receptor activity OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of delta-opioid receptors, including the activity of enkephalins as ligands. tmpzr1t_l9r_go_relaxed.owl delta-opioid receptor activity Wikipedia:Delta_Opioid_receptor This term was made obsolete because the receptor is defined based on its pharmacological properties. GO:0038046 True molecular_function owl:Class GO:0045100 biolink:NamedThing obsolete desmin OBSOLETE. A type of intermediate filament. tmpzr1t_l9r_go_relaxed.owl desmin This term was made obsolete because it represents a gene product. GO:0045098 True cellular_component owl:Class GO:0050466 biolink:NamedThing obsolete oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is not disulfide or oxygen. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0046992 True molecular_function owl:Class GO:0036097 biolink:NamedThing obsolete pre-miRNA 3'-end processing OBSOLETE. Any process involved in forming the mature 3' end of a miRNA from a pre-miRNA. tmpzr1t_l9r_go_relaxed.owl miRNA 3'-end processing|pre-miRNA 3'-end processing|microRNA 3'-end processing This term was made obsolete because it is not real a process, and was created accidentally. bf 2012-01-24T02:31:37Z True biological_process owl:Class GO:0060154 biolink:NamedThing obsolete cellular process regulating host cell cycle in response to virus OBSOLETE. Any cellular process that modulates the rate or extent of progression through the cell cycle in response to a virus. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that based on the definition, it is not clear that this process exists. True biological_process owl:Class GO:0045096 biolink:NamedThing obsolete acidic keratin OBSOLETE. A type of intermediate filament. tmpzr1t_l9r_go_relaxed.owl type I intermediate filament|acidic keratin GO:0045095 This term was made obsolete because it represents a gene product. True cellular_component owl:Class GO:0051398 biolink:NamedThing obsolete N-terminal lysine aminopeptidase activity OBSOLETE. Catalysis of the hydrolysis of a lysine residue from the N-terminal of an oligopeptide or polypeptide chain. tmpzr1t_l9r_go_relaxed.owl lysine aminopeptidase activity|lysyl aminopeptidase activity|N-terminal lysine aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0016883 biolink:NamedThing obsolete other carbon-nitrogen ligase activity OBSOLETE. A grouping term for carbon-nitrogen ligases that cannot be more accurately categorized. tmpzr1t_l9r_go_relaxed.owl other carbon-nitrogen ligase activity This term was made obsolete because it was an unnecessary grouping term. GO:0016879 True molecular_function owl:Class GO:0005569 biolink:NamedThing obsolete small nucleolar RNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl small nucleolar RNA This term was made obsolete because it represents gene products. GO:0030555 True molecular_function owl:Class GO:0010869 biolink:NamedThing obsolete regulation of receptor biosynthetic process OBSOLETE. Any process that modulates the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0072369 biolink:NamedThing obsolete regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:23:53Z True biological_process owl:Class GO:0061427 biolink:NamedThing obsolete negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter and stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. dph 2012-02-02T01:30:41Z True biological_process owl:Class GO:0005580 biolink:NamedThing obsolete membrane attack complex protein alphaM chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl membrane attack complex protein alphaM chain GO:0005579 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0070438 biolink:NamedThing obsolete mTOR-FKBP12-rapamycin complex OBSOLETE. A protein complex that contains the mTOR (mammalian target of rapamycin) serine/threonine kinase, the peptidyl-prolyl cis-trans isomerase FKBP12 (FKBP1A) and rapamycin (sirolimus). tmpzr1t_l9r_go_relaxed.owl Fkbp1a-Frap1 complex|mTOR-FKBP12-rapamycin complex This term was made obsolete because it describes a complex with a drug bound, with the drug being exogenous to the species where the experiment takes place and where that interaction would never occur naturally. True cellular_component owl:Class GO:0052361 biolink:NamedThing obsolete catabolism by organism of macromolecule in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of macromolecules within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of macromolecule in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0006200 biolink:NamedThing obsolete ATP catabolic process OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. tmpzr1t_l9r_go_relaxed.owl ATP hydrolysis|ATP breakdown|ATP catabolism|ATP degradation Wikipedia:ATP_hydrolysis The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism. GO:0016887 True biological_process owl:Class GO:0043156 biolink:NamedThing obsolete chromatin remodeling in response to cation stress OBSOLETE. Structural changes to eukaryotic chromatin occurring as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22036 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0008565 biolink:NamedThing obsolete protein transporter activity OBSOLETE. Enables the directed movement of proteins into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl enzyme transporter activity|secretin|holin|protein transport chaperone This term was obsoleted because is has been inconsistently used. True molecular_function owl:Class GO:0044046 biolink:NamedThing obsolete interaction with host via substance released outside of symbiont OBSOLETE. An interaction with the host organism mediated by a substance that is released by the other organism. This includes substances that are released via pathogen cell lysis. tmpzr1t_l9r_go_relaxed.owl interaction with host via substance released outside of symbiont cells This term was obsoleted because it conflates a process and the mechanism of secretion of the gene product mediating the process. True biological_process owl:Class GO:0022866 biolink:NamedThing obsolete transmembrane 1-electron transfer carrier OBSOLETE. Enables transfer of one electron across a membrane. tmpzr1t_l9r_go_relaxed.owl transmembrane one-electron transfer carrier The reason for obsoletion is that the term does not represent a molecular function but rather a process. True molecular_function owl:Class GO:0048310 biolink:NamedThing obsolete nucleus inheritance OBSOLETE. The partitioning of nuclei between daughter cells at cell division. tmpzr1t_l9r_go_relaxed.owl cell nucleus inheritance This term was obsoleted because it was not clearly defined. True biological_process owl:Class GO:0035110 biolink:NamedThing obsolete leg morphogenesis OBSOLETE. The process in which the anatomical structures of a leg are generated and organized. A leg is a limb on which an animal walks and stands. tmpzr1t_l9r_go_relaxed.owl leg morphogenesis This term was made obsolete because leg is a mechano-functional grouping, and having both 'leg morphogenesis' and 'hindlimb morphogenesis' terms causes errors in querying. GO:0035137|GO:0035108|GO:0007480 True biological_process owl:Class GO:1902401 biolink:NamedThing obsolete detection of stimulus involved in mitotic DNA damage checkpoint OBSOLETE. Any detection of stimulus that is involved in mitotic DNA damage checkpoint. tmpzr1t_l9r_go_relaxed.owl stimulus sensing involved in mitotic DNA damage checkpoint|stimulus detection involved in mitotic DNA damage checkpoint|perception of stimulus involved in mitotic DNA damage checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. jl 2013-09-12T12:07:12Z True biological_process owl:Class GO:0045195 biolink:NamedThing obsolete gallstone formation OBSOLETE. The formation of gallstones, hard, crystal-like accretions of cholesterol and bile pigments which develop when bile contains too much cholesterol and not enough bile. tmpzr1t_l9r_go_relaxed.owl gallstone formation This term was made obsolete because the process it represents is pathological. True biological_process owl:Class GO:0033751 biolink:NamedThing obsolete linoleate 8R-lipoxygenase OBSOLETE. Catalysis of the reaction: linoleate + O2 = (9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate. tmpzr1t_l9r_go_relaxed.owl 5,8-linoleate diol synthase (bifunctional enzyme)|7,8-linoleate diol synthase (bifunctional enzyme)|linoleate diol synthase activity The reason for obsoletion is because there is no support for the reaction. EC and RHEA mappings have been obsoleted at their source. True molecular_function owl:Class GO:0048153 biolink:NamedThing obsolete S100 alpha biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of S100 alpha protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS. tmpzr1t_l9r_go_relaxed.owl S100 alpha anabolism|S100 alpha formation|S100 alpha synthesis|S100 alpha biosynthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0106181 biolink:NamedThing obsolete translocase activity acting on inorganic anions OBSOLETE. Catalysis of the translocation of inorganic anions. tmpzr1t_l9r_go_relaxed.owl EC:7.3.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:50:54Z True molecular_function owl:Class GO:0050987 biolink:NamedThing obsolete enzyme active site formation via O-sulfo-L-serine OBSOLETE. The transient sulfation of peptidyl-serine to form O-sulfo-L-serine. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0361 This term was obsoleted because it was created by error: O-sulfo-L-serine is a post-translational modification, see PMID:14752058. True biological_process owl:Class GO:0009481 biolink:NamedThing obsolete aa3-type cytochrome c oxidase OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O. tmpzr1t_l9r_go_relaxed.owl aa3-type cytochrome c oxidase GO:0004129 This term was made obsolete because it describes a class of gene products rather than a molecular function. True molecular_function owl:Class GO:0052231 biolink:NamedThing obsolete modulation of phagocytosis in other organism involved in symbiotic interaction OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of phagocytosis in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0090047 biolink:NamedThing obsolete positive regulation of transcription regulator activity OBSOLETE. Any process that increases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. tmpzr1t_l9r_go_relaxed.owl positive regulation of transcription regulator activity At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term. tb 2009-08-07T10:24:24Z True biological_process owl:Class GO:0072365 biolink:NamedThing obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of a cellular ketone metabolic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of cellular ketone metabolism by negative regulation of transcription from an RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:12:09Z True biological_process owl:Class GO:2000682 biolink:NamedThing obsolete positive regulation of rubidium ion transport OBSOLETE. Any process that activates or increases the frequency, rate or extent of rubidium ion transport. tmpzr1t_l9r_go_relaxed.owl positive regulation of Rb+ transport|positive regulation of rubidium cation transport This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-10T10:54:37Z True biological_process owl:Class GO:0001308 biolink:NamedThing obsolete negative regulation of chromatin silencing involved in replicative cell aging OBSOLETE. The process, which occurs as a dividing cell ages, leading to expression of genes that are typically not expressed due to silencing by regulatory proteins. tmpzr1t_l9r_go_relaxed.owl loss of chromatin silencing involved in replicative cell aging|loss of chromatin silencing during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0033236 biolink:NamedThing obsolete 11-beta-hydroxysteroid dehydrogenase (NAD+) activity OBSOLETE. Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD+ = an 11-oxosteroid + NADH + H+. tmpzr1t_l9r_go_relaxed.owl 11-beta-hydroxysteroid dehydrogenase (NAD+) activity GO:0070523 True molecular_function owl:Class GO:0016902 biolink:NamedThing obsolete oxidoreductase activity, acting on the CH-OH group of donors, other acceptors OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, NAD, NADP, oxygen or a quinone or similar compound. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on the CH-OH group of donors, other acceptors This term was made obsolete because it was an unnecessary grouping term. GO:0016614 True molecular_function owl:Class GO:0009936 biolink:NamedThing obsolete expansin OBSOLETE. A group of proteins located within the cell walls of plants, both dicots and grasses, that play an essential role in loosening cell walls during cell growth. They are hydrophobic, non glycosylated proteins of about 30kDa. tmpzr1t_l9r_go_relaxed.owl expansin This term was made obsolete because it represents a gene product. GO:0009505|GO:0016049 True molecular_function owl:Class GO:0000299 biolink:NamedThing obsolete integral to membrane of membrane fraction OBSOLETE. Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes. tmpzr1t_l9r_go_relaxed.owl integral to membrane of membrane fraction This term was made obsolete because it refers to a cell fractionation experimental result and not a bona fide cellular component. GO:0016021 True cellular_component owl:Class GO:1904012 biolink:NamedThing obsolete platinum binding OBSOLETE. Binding to platinum. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that binding to platinum does not have physiological relevance. sl 2015-03-06T19:07:37Z True molecular_function owl:Class GO:0072366 biolink:NamedThing obsolete regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that modulates the frequency, rate or extent of a cellular ketone metabolic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of cellular ketone metabolism by positive regulation of transcription from an RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. mah 2010-11-16T03:12:47Z True biological_process owl:Class GO:0052346 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont nitric oxide production OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of defense-related symbiont NO production|positive regulation by organism of defense-related symbiont nitric oxide production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0031602 biolink:NamedThing obsolete ER proteasome core complex OBSOLETE. The core complex of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0075076 biolink:NamedThing obsolete positive regulation by host of symbiont adenylate cyclase activity OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function. This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:1904166 biolink:NamedThing obsolete negative regulation of cholesterol homeostasis OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cholesterol homeostasis. tmpzr1t_l9r_go_relaxed.owl downregulation of cholesterol homeostasis|inhibition of cholesterol homeostasis|down-regulation of cholesterol homeostasis|down regulation of cholesterol homeostasis This term was obsoleted at the TermGenie Gatekeeper stage. rph 2015-04-22T11:11:12Z True biological_process owl:Class GO:0006129 biolink:NamedThing obsolete protein-disulfide reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protein-disulfide reduction|protein-disulphide reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0022900|GO:0019153 True biological_process owl:Class GO:0000005 biolink:NamedThing obsolete ribosomal chaperone activity OBSOLETE. Assists in the correct assembly of ribosomes or ribosomal subunits in vivo, but is not a component of the assembled ribosome when performing its normal biological function. tmpzr1t_l9r_go_relaxed.owl ribosomal chaperone activity This term was made obsolete because it refers to a class of gene products and a biological process rather than a molecular function. GO:0042254|GO:0051082|GO:0044183 True molecular_function owl:Class RO:0002230 biolink:NamedThing ends with tmpzr1t_l9r_go_relaxed.owl RO:0002230 external ends_with GO:0100014 biolink:NamedThing obsolete positive regulation of mating type switching by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates mating type switching. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class RO:0002592 biolink:NamedThing results in organization of tmpzr1t_l9r_go_relaxed.owl RO:0002592 external results_in_organization_of GO:0060477 biolink:NamedThing obsolete peptidyl-serine phosphorylation involved in acrosome reaction OBSOLETE. The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine that is part of the acrosome reaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14281 The reason for obsoletion is that this term does not represent a specific process. True biological_process owl:Class GO:0052328 biolink:NamedThing obsolete interaction with symbiont via protein secreted by type III secretion system OBSOLETE. An interaction with the symbiont organism mediated by a substance secreted by the other organism by a type III secretion system. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with symbiont via protein secreted by type III secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0009491 biolink:NamedThing obsolete redox-active disulfide bond electron carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl redox-active disulfide bond electron carrier|redox-active disulphide bond electron carrier GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0052418 biolink:NamedThing obsolete metabolism by organism of protein in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving protein macromolecules within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of protein in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0052569 biolink:NamedThing obsolete response to defense-related symbiont nitric oxide production OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of nitric oxide produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to defense-related symbiont nitric oxide production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0000187 biolink:NamedThing obsolete activation of MAPK activity OBSOLETE. The initiation of the activity of the inactive enzyme MAP kinase (MAPK). tmpzr1t_l9r_go_relaxed.owl activation of MAPK activity during sporulation|MAPK activation|activation of MAP kinase https://github.com/geneontology/go-ontology/issues/21307 This term was obsoleted because it represents a molecular function. GO:0000165|GO:0043539 True biological_process owl:Class GO:0001724 biolink:NamedThing obsolete type III intermediate filament associated protein OBSOLETE. Proteins that associate with the ends of intermediate filaments and couple the intermediate filaments to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl type III intermediate filament associated protein GO:0045098 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0003709 biolink:NamedThing obsolete RNA polymerase III transcription factor activity OBSOLETE. Functions to initiate or regulate RNA polymerase III transcription. tmpzr1t_l9r_go_relaxed.owl RNA polymerase III transcription factor activity This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0000995|GO:0006383 True molecular_function owl:Class GO:0050424 biolink:NamedThing obsolete alanine carboxypeptidase activity OBSOLETE. Catalysis of the reaction: H2O + peptidyl-L-alanine = L-alanine + peptide. The release of a C-terminal alanine from a peptide or a variety of pteroyl or acyl groups. tmpzr1t_l9r_go_relaxed.owl N-benzoyl-L-alanine-amidohydrolase activity|alanine carboxypeptidase activity GO:0004181 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0003820 biolink:NamedThing obsolete class I major histocompatibility complex antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class I major histocompatibility complex antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. GO:0042612 True molecular_function owl:Class GO:0052451 biolink:NamedThing obsolete modulation by organism of symbiont inflammatory response OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the inflammatory response of a symbiont organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of symbiont inflammatory response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0006762 biolink:NamedThing obsolete dihydrofolate reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydrofolate reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0004146|GO:0046452 True biological_process owl:Class GO:0030147 biolink:NamedThing obsolete natriuresis OBSOLETE. The process of renal sodium excretion. tmpzr1t_l9r_go_relaxed.owl natriuresis Wikipedia:Natriuresis This term was made obsolete because its definition was inaccurate. GO:0035815 True biological_process owl:Class GO:0039544 biolink:NamedThing obsolete suppression by virus of host RIG-I activity by RIG-I proteolysis OBSOLETE. The chemical reactions and pathways performed by a virus resulting in the hydrolysis of the host RIG-I protein (also known as DDX58) by cleavage of peptide bonds, thereby inhibiting RIG-I signal transduction. tmpzr1t_l9r_go_relaxed.owl inhibition by virus of host RIG-I activity by RIG-I proteolysis|cleavage of RIG-I by viral proteinase The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-01-18T02:30:29Z True biological_process owl:Class GO:0052133 biolink:NamedThing obsolete positive aerotaxis in host OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive aerotaxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052171 biolink:NamedThing obsolete growth or development during symbiotic interaction OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl growth or development during symbiotic interaction This term was made obsolete because it contained a conjunction (or). GO:0044111 True biological_process owl:Class GO:2000602 biolink:NamedThing obsolete regulation of interphase of mitotic cell cycle OBSOLETE. Any process that modulates the frequency, rate or extent of interphase of mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of interphase of mitotic cell cycle This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. pr 2011-04-15T03:52:25Z True biological_process owl:Class GO:0005066 biolink:NamedThing obsolete transmembrane receptor protein tyrosine kinase signaling protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase signalling protein activity|transmembrane receptor protein tyrosine kinase signaling protein activity This term was made obsolete because the meaning of the term is ambiguous and it incorporates process information. GO:0007169|GO:0035556 True molecular_function owl:Class GO:0006495 biolink:NamedThing obsolete terminal O-glycosylation OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl terminal O-glycosylation This term was made obsolete because there is no evidence for the existence of this process. True biological_process owl:Class GO:0004786 biolink:NamedThing obsolete Mn, Fe superoxide dismutase OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Mn, Fe superoxide dismutase This term was made obsolete because the function is covered by an existing term. GO:0004784 True molecular_function owl:Class GO:0072469 biolink:NamedThing obsolete detection of stimulus involved in cell size control checkpoint OBSOLETE. The series of events in which information about cell size is received and converted into a molecular signal, contributing to a cell size control checkpoint. tmpzr1t_l9r_go_relaxed.owl cell size control checkpoint sensor process|sensing involved in cell size control checkpoint|cell size control checkpoint sensor mechanism|detection of stimulus involved in mitotic cell cycle cell size control checkpoint https://github.com/geneontology/go-ontology/issues/20976 This term was obsoleted because it corresponds to a molecular function. mah 2010-12-09T11:46:08Z True biological_process owl:Class GO:0075335 biolink:NamedThing obsolete positive regulation of symbiont adenylate cyclase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its adenylate cyclase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008189 biolink:NamedThing obsolete apoptosis inhibitor activity OBSOLETE. The function held by products which directly block any step in the process of apoptosis. tmpzr1t_l9r_go_relaxed.owl apoptosis inhibitor activity GO:0043066 This term was made obsolete because it represents involvement in a biological process. True molecular_function owl:Class GO:0071509 biolink:NamedThing obsolete activation of MAPKK activity involved in conjugation with cellular fusion OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl activation of MAPKK activity involved in mating response|activation of MAP kinase kinase activity during conjugation with cellular fusion|conjugation with cellular fusion, activation of MAPKK activity|conjugation with cellular fusion, activation of MAP kinase kinase activity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. mah 2010-01-05T02:09:58Z True biological_process owl:Class GO:0019027 biolink:NamedThing obsolete ambisense viral genome OBSOLETE. A RNA genome that contains coding regions that are either positive sense or negative sense on the same RNA molecule. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0052234 biolink:NamedThing obsolete negative aerotaxis on or near other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative aerotaxis on or near other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0075023 biolink:NamedThing obsolete MAPK-mediated regulation of appressorium formation OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont MAP kinase-mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl mitogen-activated protein kinase-mediated activation of appressorium formation This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0075022 biolink:NamedThing obsolete ethylene-mediated activation of appressorium formation OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont ethylene-mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0003687 biolink:NamedThing obsolete DNA replication factor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA replication factor This term was made obsolete because it does not represent a true molecular function. GO:0006260 True molecular_function owl:Class GO:0015479 biolink:NamedThing obsolete outer membrane exporter porin OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl outer membrane exporter porin This term was made obsolete because it contains both component and function information. GO:0009279|GO:0015288 True molecular_function owl:Class GO:0106182 biolink:NamedThing obsolete translocase activity acting on amino acids and peptides. OBSOLETE. Catalysis of the translocation of amino acids and peptides. tmpzr1t_l9r_go_relaxed.owl EC:7.4.-.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-04-05T15:52:34Z True molecular_function owl:Class GO:0044051 biolink:NamedThing obsolete interaction with host via substance released by symbiont cytolysis OBSOLETE. An interaction with the host organism mediated by a substance released via cytolysis of symbiont cells. Cytolysis is the rupture of cell membranes and the loss of cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host via substance released by cytolysis of symbiont This term was obsoleted because it conflates a process and the mechanism of secretion of the gene product mediating the process. True biological_process owl:Class GO:0004250 biolink:NamedThing obsolete aminopeptidase I activity OBSOLETE. Catalysis of the release of an N-terminal amino acid, preferably a neutral or hydrophobic one, from a polypeptide. Aminoacyl-arylamides are poor substrates. tmpzr1t_l9r_go_relaxed.owl vacuolar aminopeptidase I activity|aminopeptidase III activity|yeast aminopeptidase I|aminopeptidase yscI activity|aminopeptidase I activity|leucine aminopeptidase IV activity EC:3.4.11.22|MetaCyc:3.4.11.22-RXN This term was made obsolete because it represents a gene product. GO:0004177|GO:0008235 True molecular_function owl:Class GO:0052146 biolink:NamedThing obsolete positive energy taxis on or near host OBSOLETE. The directed movement of a motile cell or organism on or near its host organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0006462 biolink:NamedThing obsolete protein complex assembly, multichaperone pathway OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protein complex assembly, multichaperone pathway This term was made obsolete because the string was ambiguous and the original meaning of the term was hence unknown. GO:0051131|GO:0006457 True biological_process owl:Class GO:1990855 biolink:NamedThing obsolete myo-inositol import across plasma membrane OBSOLETE. The directed movement of myo-inositol from outside of a cell into the intracellular region of a cell across the plasma membrane. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-09-17T16:52:32Z True biological_process owl:Class GO:0030827 biolink:NamedThing obsolete negative regulation of cGMP biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP. tmpzr1t_l9r_go_relaxed.owl negative regulation of cGMP biosynthesis|downregulation of cGMP biosynthetic process|down-regulation of cGMP biosynthetic process|inhibition of cGMP biosynthetic process|negative regulation of cGMP synthesis|negative regulation of cGMP anabolism|negative regulation of cGMP formation|down regulation of cGMP biosynthetic process The reason for obsoletion is that the term represents the regulation of a signaling pathway, and not regulation of metabolism. GO:0030251 True biological_process owl:Class GO:0060597 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in mammary gland formation OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the formation of the mammary line, placode or bud. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0030879|GO:0060592|GO:0006357 dph 2009-05-13T12:04:53Z True biological_process owl:Class GO:0102131 biolink:NamedThing obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxyglutaryl-[acp] methyl ester <=> NADPH + H+ + a 3-oxo-glutaryl-[acp] methyl ester. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21876 This term was obsoleted because it represents a specific substrate, and is beyond the specificity of GO. GO:0004316 True molecular_function owl:Class GO:0005564 biolink:NamedThing obsolete cytosolic tRNA OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytosolic tRNA Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0003815 biolink:NamedThing obsolete complement component C1r activity OBSOLETE. Catalysis of the selective cleavage of Lys(or Arg)-Ile bond in complement subcomponent C1s to form the active form of C1s (EC:3.4.21.42). tmpzr1t_l9r_go_relaxed.owl activated complement C1r|C1r esterase activity|complement component C1r activity|complement subcomponent C1r GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0001300 biolink:NamedThing obsolete chronological cell aging OBSOLETE. The process associated with progression of the cell from its inception to the end of its lifespan that occurs when the cell is in a non-dividing, or quiescent, state. tmpzr1t_l9r_go_relaxed.owl chronological cell ageing https://github.com/geneontology/go-ontology/issues/18632 This term was obsoleted because it represent an assay - how long the cell lives -, not a true biological process. GO:0044838|GO:0090398 True biological_process owl:Class GO:0030939 biolink:NamedThing obsolete response to long-day photoperiod OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a photoperiod, an intermittent cycle of light (day) and dark (night) photoperiod regimes, with the light phase being longer than the dark. tmpzr1t_l9r_go_relaxed.owl response to long-day photoperiod This term was made obsolete because it was wrongly defined. GO:0048571 True biological_process owl:Class GOREL:0002003 biolink:NamedThing results_in_distribution_of tmpzr1t_l9r_go_relaxed.owl GOREL:0002003 external results_in_distribution_of GO:0006380 biolink:NamedThing obsolete poly-A binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl poly-A binding This term was made obsolete because it represents a molecular function and not a biological process. GO:0008143 True biological_process owl:Class GO:0015340 biolink:NamedThing obsolete zinc, cadmium uptake permease activity OBSOLETE. Catalysis of the reaction: (Zn2+ or Cd2+)(out) = (Zn2+ or Cd2+)(in). The activity is driven by proton motive force, possibly by proton symport. tmpzr1t_l9r_go_relaxed.owl zinc, cadmium uptake permease activity This term was made obsolete because it represents more than one molecular function. GO:0015086|GO:0005385 True molecular_function owl:Class GO:0052406 biolink:NamedThing obsolete metabolism by host of symbiont carbohydrate OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0033220 biolink:NamedThing obsolete ATPase-coupled amide-transporter activity OBSOLETE. Catalysis of the reaction: ATP + H2O + amide(out) = ADP + phosphate + amide(in). tmpzr1t_l9r_go_relaxed.owl ATP-dependent amide-transporter activity|amide-transporting ATPase activity This term was obsoleted because it is an unnecessary grouping class. True molecular_function owl:Class GO:0008438 biolink:NamedThing obsolete 1-phosphatidylinositol-5-phosphate kinase OBSOLETE. Catalysis of the reaction: diphosphate + a purine nucleoside = phosphate + a purine mononucleotide. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol-5-phosphate kinase This term was made obsolete because it is a redundant grouping term with only one child. It is also incorrectly defined and had an incorrect EC dbxref. GO:0016309 True molecular_function owl:Class GO:0052048 biolink:NamedThing obsolete interaction with host via secreted substance OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host via secreted substance involved in symbiotic interaction|interaction with host via secreted substance during symbiotic interaction This term was obsoleted because it conflates a process and the mechanism of secretion of the gene product mediating the process. True biological_process owl:Class GO:0004243 biolink:NamedThing obsolete mitochondrial intermediate peptidase activity OBSOLETE. Catalysis of the release of an N-terminal octapeptide as second stage of processing of some proteins imported in the mitochondrion. tmpzr1t_l9r_go_relaxed.owl mitochondrial intermediate precursor-processing proteinase activity|mitochondrial intermediate peptidase activity|MIP GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990581 biolink:NamedThing obsolete lysosome lysis OBSOLETE. The rupture of the lysosomal membrane and loss of contents as a result of osmotic change, G-protein-driven disintegration, or unspecified cause. tmpzr1t_l9r_go_relaxed.owl lysosomal lysis|lysosome lysis This term was obsoleted at the TermGenie Gatekeeper stage. sl 2014-12-10T18:54:00Z True biological_process owl:Class GO:0031658 biolink:NamedThing obsolete negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G1/S transition of the cell cycle. tmpzr1t_l9r_go_relaxed.owl G1/S-specific inhibition of cyclin-dependent protein kinase activity|G1/S-specific negative regulation of cyclin-dependent protein kinase activity|G1/S-specific downregulation of cyclin-dependent protein kinase activity|negative regulation of cyclin-dependent protein kinase activity during G1/S|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|G1/S-specific down regulation of cyclin-dependent protein kinase activity|G1/S-specific down-regulation of cyclin-dependent protein kinase activity The term has been obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0051404 biolink:NamedThing obsolete clostripain activity OBSOLETE. Catalysis of the cleavage of Arg-Xaa bonds. tmpzr1t_l9r_go_relaxed.owl alpha-clostridipain|clostripain activity|clostridiopeptidase B activity|Clostridium histolyticum proteinase B GO:0004197 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0140603 biolink:NamedThing obsolete ATP hydrolysis activity OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + H+ Pi. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20876 GO:0016887 This term was deprecated because it was created in the wrong branch on the ontology. pg 2021-02-12T18:57:14Z True molecular_function owl:Class GO:0106199 biolink:NamedThing obsolete translocase activity acting on amino acids and peptides linked to oxidoreductase reactions OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to oxidoreductase reactions. tmpzr1t_l9r_go_relaxed.owl EC:7.4.1.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:23:04Z True molecular_function owl:Class GO:0046542 biolink:NamedThing obsolete alpha-factor export OBSOLETE. The directed movement of alpha-factor, one of the two yeast mating factors, out of a cell. tmpzr1t_l9r_go_relaxed.owl alpha-factor export This term was made obsolete because it is a gene product based term and it does not involve a unique process. GO:0015833 True biological_process owl:Class GO:0000205 biolink:NamedThing obsolete activation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE. Upregulation of MAP kinase activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl activation of MAPK during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0043329 biolink:NamedThing obsolete protein targeting to membrane involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway OBSOLETE. The process of directing proteins towards a membrane using signals contained within the protein, occurring that contributes to ubiquitin-dependent protein catabolism via the MVB pathway; the destruction of a protein or peptide covalently tagged with a ubiquitin, via the multivesicular body (MVB) sorting pathway. tmpzr1t_l9r_go_relaxed.owl protein targeting to membrane during ubiquitin-dependent protein catabolic process via the MVB pathway|protein-membrane targeting during ubiquitin-dependent protein breakdown via the MVB pathway|protein targeting to membrane during ubiquitin-dependent protein degradation via the MVB pathway|protein-membrane targeting during ubiquitin-dependent protein degradation via the MVB pathway|protein-membrane targeting during ubiquitin-dependent protein catabolism via the MVB pathway|protein targeting to membrane during ubiquitin-dependent protein breakdown via the MVB pathway|protein membrane targeting during ubiquitin-dependent protein catabolic process via the MVB pathway|protein-membrane targeting during ubiquitin-dependent protein catabolic process via the MVB pathway|protein membrane targeting during ubiquitin-dependent protein catabolism via the MVB pathway The reason for obsoleting is that the term is not cleary defined, ie the membrane to which proteins are being targeted is not specified. True biological_process owl:Class GO:0080010 biolink:NamedThing obsolete regulation of oxygen and reactive oxygen species metabolic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH). tmpzr1t_l9r_go_relaxed.owl regulation of oxygen and reactive oxygen species metabolic process This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together. GO:2000374|GO:2000377 True biological_process owl:Class GO:0007257 biolink:NamedThing obsolete activation of JUN kinase activity OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase (JNK). tmpzr1t_l9r_go_relaxed.owl activation of SAPK activity https://github.com/geneontology/go-ontology/issues/21307 GO:0007254|GO:0043539 True biological_process owl:Class GO:0030569 biolink:NamedThing obsolete chymotrypsin inhibitor activity OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase chymotrypsin. tmpzr1t_l9r_go_relaxed.owl chymotrypsin inhibitor activity GO:0004867 This term was made obsolete because it represents a regulator of an obsolete molecular function term. True molecular_function owl:Class GO:0016911 biolink:NamedThing obsolete SAP kinase 4 activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl SAPK4|SAP kinase 4 activity This term was made obsolete because it describes a gene product. GO:0004674|GO:0007254 True molecular_function owl:Class GO:0075170 biolink:NamedThing obsolete negative regulation of protein kinase-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont protein kinase-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0017030 biolink:NamedThing obsolete beta-galactosidase stabilization activity OBSOLETE. Stabilization of the structure of beta-galactosidase. tmpzr1t_l9r_go_relaxed.owl beta-galactosidase stabilization activity GO:0050821 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0005907 biolink:NamedThing obsolete HA1 clathrin adaptor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl HA1 clathrin adaptor|AP1 This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology was erroneous. GO:0030121 True cellular_component owl:Class GO:0007170 biolink:NamedThing obsolete transmembrane receptor protein tyrosine kinase ligand binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane receptor protein tyrosine kinase ligand binding This term was made obsolete because it represents a function rather than a process. GO:0030971 True biological_process owl:Class GO:0007115 biolink:NamedThing obsolete bud site selection/establishment of cell polarity (sensu Saccharomyces) OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bud site selection/establishment of cell polarity (sensu Saccharomyces) This term was made obsolete because it represents two processes. GO:0000282|GO:0030010 True biological_process owl:Class GO:1905252 biolink:NamedThing obsolete regulation of epidermal growth factor receptor signaling pathway involved in heart process OBSOLETE. Any regulation of epidermal growth factor receptor signaling pathway that is involved in heart process. tmpzr1t_l9r_go_relaxed.owl regulation of EGF receptor signaling pathway involved in cardiac process|regulation of EGFR signaling pathway involved in cardiac process|regulation of EGF receptor signalling pathway involved in heart process|regulation of EGF receptor signaling pathway involved in heart process|regulation of EGF receptor signalling pathway involved in cardiac process|regulation of epidermal growth factor receptor signaling pathway involved in cardiac process|regulation of EGFR signaling pathway involved in heart process This term was obsoleted at the TermGenie Gatekeeper stage. bc 2016-06-10T09:21:02Z True biological_process owl:Class GO:1905548 biolink:NamedThing obsolete negative regulation of subtelomeric heterochromatin assembly OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of subtelomeric heterochromatin assembly. tmpzr1t_l9r_go_relaxed.owl downregulation of telomeric heterochromatin assembly|downregulation of telomeric heterochromatin formation|down-regulation of telomeric heterochromatin formation|negative regulation of telomeric heterochromatin assembly|negative regulation of telomeric heterochromatin formation|inhibition of telomeric heterochromatin formation|inhibition of telomeric heterochromatin assembly|down-regulation of telomeric heterochromatin assembly|down regulation of telomeric heterochromatin assembly|down regulation of telomeric heterochromatin formation https://github.com/geneontology/go-ontology/issues/22027|https://github.com/geneontology/go-ontology/issues/19188 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. nc 2016-10-12T11:18:23Z True biological_process owl:Class GO:0019738 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052147 biolink:NamedThing obsolete positive energy taxis in host OBSOLETE. The directed movement of a motile cell or organism within its host organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive energy taxis within host https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0006927 biolink:NamedThing obsolete transformed cell apoptotic process OBSOLETE. Any apoptotic process in a transformed cell, a cell that has undergone changes manifested by escape from control mechanisms, increased growth potential, alterations in the cell surface, karyotypic abnormalities, morphological and biochemical deviations from the norm. tmpzr1t_l9r_go_relaxed.owl transformed cell programmed cell death by apoptosis|programmed cell death, transformed cells|programmed cell death of transformed cells by apoptosis|transformed cell apoptosis|killing transformed cells|apoptosis of transformed cells This term was made obsolete because it does not refer to a normal process. True biological_process owl:Class GO:0018997 biolink:NamedThing obsolete electron transfer carrier OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl electron transfer carrier This term was made obsolete because the parent terms cover its function. GO:0009055 True molecular_function owl:Class GO:0015613 biolink:NamedThing obsolete galactose/glucose (methylgalactoside) porter activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl galactose/glucose (methylgalactoside) porter activity This term was made obsolete because it represents a multifunctional gene product. GO:0015592|GO:0005355|GO:0005354|GO:0015291 True molecular_function owl:Class GO:0015072 biolink:NamedThing obsolete phosphatidylinositol 3-kinase, class I, catalyst activity OBSOLETE. Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase, class I, catalyst activity This term was made obsolete because it represents a class of gene products. GO:0046934|GO:0016303|GO:0035005 True molecular_function owl:Class GO:0016694 biolink:NamedThing obsolete bacterial catalase-peroxidase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bacterial catalase-peroxidase activity This term was made obsolete because it represents a bifunctional gene product. GO:0004601|GO:0004096 True molecular_function owl:Class GO:0000051 biolink:NamedThing obsolete urea cycle intermediate metabolic process OBSOLETE. The chemical reactions and pathways involving any of the intermediate compounds involved in the urea cycle, a cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea. tmpzr1t_l9r_go_relaxed.owl urea cycle intermediate metabolic process|urea cycle intermediate metabolism This term was made obsolete because it is a grouping term that is not useful, but has caused true path violations. True biological_process owl:Class RO:0012003 biolink:NamedThing acts on population of tmpzr1t_l9r_go_relaxed.owl RO:0012003 external acts_on_population_of GO:0005396 biolink:NamedThing obsolete transmembrane conductance regulator activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl transmembrane conductance regulator activity This term was made obsolete because its meaning was ambiguous, it was undefined and its position in the tree wrong. GO:0043267 True molecular_function owl:Class GO:0052013 biolink:NamedThing obsolete catabolism by symbiont of host macromolecule OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of host macromolecule https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0008144 biolink:NamedThing obsolete drug binding OBSOLETE. Binding to a drug, a naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism;typically used in the diagnosis, prevention, or treatment of disease. tmpzr1t_l9r_go_relaxed.owl It is not meaningful to describe a molecular function by what role a compound may be used for at some times. True molecular_function owl:Class GO:1990364 biolink:NamedThing obsolete response to aldehyde OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldehyde. tmpzr1t_l9r_go_relaxed.owl response to aldehyde This term was obsoleted at the TermGenie Gatekeeper stage. tt 2014-04-23T22:18:04Z True biological_process owl:Class GO:1902376 biolink:NamedThing obsolete protein denaturation involved in proteasomal ubiquitin-dependent protein catabolic process OBSOLETE. Any protein denaturation that is involved in proteasomal ubiquitin-dependent protein catabolic process. tmpzr1t_l9r_go_relaxed.owl protein denaturation involved in proteasomal processing|protein denaturation involved in proteasomal ubiquitin-dependent protein catabolism|protein denaturation involved in proteasome pathway|protein denaturation involved in proteasomal pathway|protein denaturation involved in proteasomal ubiquitin-dependent protein breakdown|protein denaturation involved in proteasomal ubiquitin-dependent protein degradation This term was made obsolete because it was poorly defined and the intended usage was unclear. al 2013-08-30T09:29:14Z True biological_process owl:Class GO:0052066 biolink:NamedThing obsolete entry of symbiont into host cell by promotion of host phagocytosis OBSOLETE. The invasion by a symbiont of a host organism cell by utilizing the host phagocytosis mechanism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl penetration of organism into host cell by promotion of host phagocytosis|entry of organism into cell of other organism by promotion of phagocytosis in other organism involved in symbiotic interaction|entry of organism into host cell by promotion of host phagocytosis|entry of organism into cell of other organism by promotion of phagocytosis in other organism during symbiotic interaction|penetration of symbiont into host cell by promotion of host phagocytosis https://github.com/geneontology/go-ontology/issues/18562 This term was obsoleted because it was misused. True biological_process owl:Class GO:0023050 biolink:NamedThing obsolete consequence of signal transmission OBSOLETE. The steps whereby the downstream processes started by a signal are brought to a conclusion. Examples include destruction of cAMP by PDE, or endocytosis resulting from receptor phosphorylation. The termination process ends when the receptor has returned to its inactive state. tmpzr1t_l9r_go_relaxed.owl consequence of signal transmission|signal termination This term was made obsolete because the term is no longer needed. 2010-02-16T09:30:50Z True biological_process owl:Class GO:0051883 biolink:NamedThing obsolete killing of cells in other organism involved in symbiotic interaction OBSOLETE. Any process mediated by an organism that results in the death of cells in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl killing of cells in other organism during symbiotic interaction This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0019017 biolink:NamedThing obsolete segmented viral genome OBSOLETE. A viral genome that is divided into two or more physically separate molecules of nucleic acid and packaged into a single virion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0008246 biolink:NamedThing obsolete electron transfer flavoprotein OBSOLETE. Works in conjunction with acyl-CoA dehydrogenase to catalyze the oxidation of CoA and reduce ubiquinone. Part of the mitochondrial electron transport system. tmpzr1t_l9r_go_relaxed.owl ETF|electron transfer flavoprotein GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0048622 biolink:NamedThing obsolete reproductive sporulation OBSOLETE. The formation of reproductive spores. tmpzr1t_l9r_go_relaxed.owl reproductive sporulation This term was made obsolete because it was ambiguously defined and incorrectly placed in the ontology. True biological_process owl:Class GO:0006377 biolink:NamedThing obsolete MATa1 (A1) pre-mRNA splicing OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl MATa1 (A1) pre-mRNA splicing This term was made obsolete because it does not represent a process unique to splicing of the MATa1 (A1) pre-mRNA, but a recycling defect exacerbated by the presence of two introns within the same gene. GO:0000244 True biological_process owl:Class GO:0100017 biolink:NamedThing obsolete negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates single organismal cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0075149 biolink:NamedThing obsolete negative regulation of signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0075083 biolink:NamedThing obsolete negative regulation by host of symbiont transmembrane receptor-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0006199 biolink:NamedThing obsolete ADP reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ADP reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051061 True biological_process owl:Class GO:0100054 biolink:NamedThing obsolete positive regulation of flocculation via cell wall protein-carbohydrate interaction by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates flocculation via cell wall protein-carbohydrate interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0004229 biolink:NamedThing obsolete gelatinase B activity OBSOLETE. Catalysis of the cleavage of gelatin types I and V and collagen types IV and V. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase 9 activity|macrophage gelatinase activity|collagenase IV|collagenase type IV|gelatinase B activity|gelatinase MMP 9|92-kDa type IV collagenase activity|95 kDa type IV collagenase/gelatinase activity|MMP 9|type IV collagen metalloproteinase|MMP-9|92-kDa gelatinase activity|type V collagenase activity GO:0004222 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005065 biolink:NamedThing obsolete heterotrimeric G-protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl heterotrimeric G-protein GO:0005834 This term was made obsolete because it represents a cellular component and not a molecular function. True molecular_function owl:Class GO:0103053 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0018248 biolink:NamedThing obsolete enzyme active site formation via peptidyl cysteine sulfation OBSOLETE. The formation of an enzyme active site via transient sulfation of peptidyl-cysteine to form S-sulfo-L-cysteine. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via S-sulpho-L-cysteine https://github.com/geneontology/go-ontology/issues/15594 This term was obsoleted because it was created by error: cysteine sulfation is a post-translational modification, see PMID:12876326. True biological_process owl:Class GO:0045567 biolink:NamedThing obsolete negative regulation of TRAIL receptor 2 biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 2. tmpzr1t_l9r_go_relaxed.owl downregulation of TRAIL receptor 2 biosynthetic process|negative regulation of TRAIL receptor 2 biosynthesis|inhibition of TRAIL receptor 2 biosynthetic process|negative regulation of TRAIL receptor 2 anabolism|negative regulation of TRAIL receptor 2 formation|down regulation of TRAIL receptor 2 biosynthetic process|negative regulation of TRAIL receptor 2 synthesis|down-regulation of TRAIL receptor 2 biosynthetic process https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0019268 biolink:NamedThing obsolete glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+) OBSOLETE. The chemical reactions and pathways resulting in the formation of glutamate, catalyzed by the enzyme glutamate dehydrogenase (NADP+). tmpzr1t_l9r_go_relaxed.owl glutamate anabolism, using glutamate dehydrogenase (NAD(P)+)|glutamate synthesis, using glutamate dehydrogenase (NAD(P)+)|glutamate formation, using glutamate dehydrogenase (NAD(P)+)|glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+) This term was made obsolete because it represents a molecular function. GO:0006537|GO:0004353 True biological_process owl:Class GO:0007236 biolink:NamedThing obsolete activation of Ssk1 protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of Ssk1 protein This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:0051925 biolink:NamedThing obsolete regulation of calcium ion transport via voltage-gated calcium channel activity OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel. tmpzr1t_l9r_go_relaxed.owl regulation of calcium ion transport via voltage-gated calcium channel activity|regulation of calcium transport via voltage-gated calcium channel This term was made obsolete because it is ill-defined: channel activities are part of ion transport processes, and not the other way round. GO:0005245 True biological_process owl:Class GO:0015017 biolink:NamedThing obsolete glypican OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl glypican This term was made obsolete because it represents a gene product (was misspelled 'glycipan'). True molecular_function owl:Class GO:0005429 biolink:NamedThing obsolete chromaffin granule amine transmembrane transporter activity OBSOLETE. Enables the transfer of amines across chromaffin granule membranes. tmpzr1t_l9r_go_relaxed.owl The term was obsoleted because its intended usage was unclear: chromaffin granules are dense core secretory vesicles (PMID:20853344) so whatever they transport must be by secretion. True molecular_function owl:Class GO:0100038 biolink:NamedThing obsolete regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cellular response to oxidative stress. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052438 biolink:NamedThing obsolete modulation by organism of defense-related symbiont callose deposition OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of callose deposition by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of defense-related symbiont callose deposition This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0019764 biolink:NamedThing obsolete high affinity Fc receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl high affinity Fc receptor activity This term was made obsolete because it is an unnecessary grouping term. GO:0019771|GO:0019768 True molecular_function owl:Class GO:0052417 biolink:NamedThing obsolete metabolism by host of symbiont protein OBSOLETE. The chemical reactions and pathways performed by an organism involving protein macromolecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0100013 biolink:NamedThing obsolete positive regulation of fatty acid beta-oxidation by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates fatty acid beta-oxidation. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0042808 biolink:NamedThing obsolete neuronal Cdc2-like kinase binding OBSOLETE. Binding to neuronal Cdc2-like kinase, an enzyme involved in the regulation of neuronal differentiation and neuro-cytoskeleton dynamics. tmpzr1t_l9r_go_relaxed.owl neuronal Cdc2-like kinase binding GO:0019901 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0001319 biolink:NamedThing obsolete inheritance of oxidatively modified proteins involved in replicative cell aging OBSOLETE. A protein localization process in which progeny cells acquire, or are barred from acquiring, proteins that have been altered by reaction with reactive oxygen species in dividing aging cells. tmpzr1t_l9r_go_relaxed.owl inheritance of oxidatively modified proteins during replicative cell ageing|inheritance of oxidatively modified proteins during replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:2000154 biolink:NamedThing obsolete negative regulation of flagellar cell motility OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of flagellar cell motility. tmpzr1t_l9r_go_relaxed.owl negative regulation of flagellar cell motility This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:1902020|GO:1902201 mah 2010-10-04T12:41:04Z True biological_process owl:Class GO:0019038 biolink:NamedThing obsolete provirus OBSOLETE. The name given to a viral genome after it has been integrated into the host genome; particularly applies to retroviruses and is a required part of the retroviral replication cycle. tmpzr1t_l9r_go_relaxed.owl Wikipedia:Provirus This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0006731 biolink:NamedThing obsolete coenzyme and prosthetic group metabolic process OBSOLETE. The chemical reactions and pathways involving coenzymes and prosthetic groups. tmpzr1t_l9r_go_relaxed.owl coenzyme and prosthetic group metabolic process This term was made obsolete because it was replaced by more specific terms. GO:0051189 True biological_process owl:Class GO:0030801 biolink:NamedThing obsolete positive regulation of cyclic nucleotide metabolic process OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides. tmpzr1t_l9r_go_relaxed.owl up regulation of cyclic nucleotide metabolic process|stimulation of cyclic nucleotide metabolic process|up-regulation of cyclic nucleotide metabolic process|upregulation of cyclic nucleotide metabolic process|positive regulation of cyclic nucleotide metabolism|activation of cyclic nucleotide metabolic process The reason for obsoletion is that this term represents the regulation of a signaling pathway, not regulation of metabolism. True biological_process owl:Class GO:0075153 biolink:NamedThing obsolete regulation of transmembrane receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its transmembrane receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl regulation of symbiont transmembrane receptor-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0006732 biolink:NamedThing obsolete coenzyme metabolic process OBSOLETE. The chemical reactions and pathways involving coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. tmpzr1t_l9r_go_relaxed.owl group transfer coenzyme metabolic process|coenzyme metabolism|coenzyme and prosthetic group metabolism|coenzyme and prosthetic group metabolic process|group transfer coenzyme metabolism 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme. True GO:0006752 biological_process owl:Class GO:1990897 biolink:NamedThing obsolete CTDK-1 complex OBSOLETE. A protein complex that phosphorylates serine 2 residues in the CTD domain of productively elongating large subunits of DNA-directed RNA polymerase II, holoenzyme. In S. cerevisiae this complex consists of CTK1/CTK2/CTK3, in S. pombe Lsk1/Lsc1/Lsg1. Human CTK1 homologs include CDK12/13. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. al 2015-11-06T01:57:32Z True cellular_component owl:Class GO:1905886 biolink:NamedThing obsolete chromatin remodeling involved in meiosis I OBSOLETE. Any chromatin remodeling that is involved in meiosis I. tmpzr1t_l9r_go_relaxed.owl meiosis-specific chromatin remodeling|chromatin remodelling involved in meiosis I|chromatin modelling involved in meiosis I|chromatin modeling involved in meiosis I https://github.com/geneontology/go-ontology/issues/22036 This term was obsoleted because it represents a GO-CAM model. mah 2017-01-31T14:29:00Z True biological_process owl:Class GO:0033158 biolink:NamedThing obsolete regulation of protein import into nucleus, translocation OBSOLETE. Any process that modulates the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane. tmpzr1t_l9r_go_relaxed.owl regulation of protein import into cell nucleus, translocation This term has been obsoleted because it represents a substep of the parent (GO:0006606 protein import into nucleus), has been incorrectly used. True biological_process owl:Class GO:0071851 biolink:NamedThing obsolete mitotic G1 cell cycle arrest in response to nitrogen starvation OBSOLETE. The process in which the mitotic cell cycle is halted during G1 phase, as a result of deprivation of nitrogen. tmpzr1t_l9r_go_relaxed.owl G1 mitotic cell cycle arrest in response to nitrogen starvation https://github.com/geneontology/go-ontology/issues/20989 This term was obsoleted because it does not represent a specific process. mah 2010-09-10T02:58:09Z True biological_process owl:Class GO:0035012 biolink:NamedThing obsolete polytene chromosome, telomeric region OBSOLETE. The terminal region of a polytene chromosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19177 This term was obsoleted because it likely represents an assay for GO:0099115 chromosome, subtelomeric region. True cellular_component owl:Class GO:0001314 biolink:NamedThing obsolete replication of extrachromosomal circular DNA involved in replicative cell aging OBSOLETE. Replication of circular DNA following excision from the chromosome of dividing cells as they age; replication of extrachromosomal circular DNA generally occurs independently of chromosomal replication. tmpzr1t_l9r_go_relaxed.owl replication of extrachromosomal circular DNA during replicative cell aging|replication of extrachromosomal circular DNA during replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0008648 biolink:NamedThing obsolete tachykinin OBSOLETE. A family of hormones that stimulate secretion of saliva and cause smooth muscle contraction and vasodilation. tmpzr1t_l9r_go_relaxed.owl tachykinin This term was made obsolete because it represents a gene product. GO:0046878|GO:0042311|GO:0045987|GO:0005102 True molecular_function owl:Class dct:license biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0015991 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075034 biolink:NamedThing obsolete nuclear division involved in appressorium formation OBSOLETE. The process in which nuclear division occurs within a symbiont spore that contributes to appressorium formation. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl nuclear division during appressorium formation on or near host|nuclear division involved in appressorium formation on or near host https://github.com/geneontology/go-ontology/issues/21923 The reason for obsoletion is that there is no evidence that this process exists. True biological_process owl:Class GO:0007090 biolink:NamedThing obsolete regulation of S phase of mitotic cell cycle OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the mitotic cell cycle. tmpzr1t_l9r_go_relaxed.owl regulation of S phase of mitotic cell cycle|regulation of S-phase of mitotic cell cycle This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. GO:0044772 True biological_process owl:Class GO:0008992 biolink:NamedThing obsolete repressor LexA activity OBSOLETE. Catalysis of the hydrolysis of Ala-Gly bond in repressor lexA. tmpzr1t_l9r_go_relaxed.owl repressor LexA activity|LexA repressor|repressor lexA GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:1990797 biolink:NamedThing obsolete cholecystokinin secretion OBSOLETE. The controlled release of cholecystokinin from a cell. Cholecystokinin is a peptide hormone that participates in pancreatic enzyme release in the gut and is also found in the brain. tmpzr1t_l9r_go_relaxed.owl CCK secretion This term was obsoleted at the TermGenie Gatekeeper stage. sl 2015-07-09T23:14:23Z True biological_process owl:Class GO:0003794 biolink:NamedThing obsolete acute-phase response protein activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl acute-phase response protein activity This term was made obsolete because it refers to involvement in a biological process. GO:0006953 True molecular_function owl:Class GO:0006441 biolink:NamedThing obsolete binding to mRNA cap OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl binding to mRNA cap This term was made obsolete because it represents a function rather than a process. GO:0000339 True biological_process owl:Class GO:0033805 biolink:NamedThing obsolete sarcosine/dimethylglycine N-methyltransferase activity OBSOLETE. Catalysis of the reactions: S-adenosyl-L-methionine + sarcosine = S-adenosyl-L-homocysteine + N,N-dimethylglycine, and S-adenosyl-L-methionine + N,N-dimethylglycine = S-adenosyl-L-homocysteine + betaine. tmpzr1t_l9r_go_relaxed.owl sarcosine/dimethylglycine N-methyltransferase activity|S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase activity|SDMT|sarcosine dimethylglycine N-methyltransferase activity|sarcosine dimethylglycine methyltransferase activity|ApDMT This term was made obsolete because it represents two reactions, and should be two separate terms. GO:0052729|GO:0052730 True molecular_function owl:Class GO:0052369 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075305 biolink:NamedThing obsolete modulation of growth or development of symbiont on or near host OBSOLETE. Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl modulation of growth or development of symbiont on or near host surface|modulation of growth or development of symbiont on or near host This term was made obsolete because it contained a conjunction (or). True biological_process owl:Class GO:0052486 biolink:NamedThing obsolete negative regulation by organism of symbiont innate immunity OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the symbiont organism, the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont innate immune response|negative regulation by organism of symbiont innate immunity This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0075096 biolink:NamedThing obsolete modulation by host of symbiont signal transduction mediated by G-protein gamma subunit OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont signal transduction mediated by G-protein gamma subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0052466 biolink:NamedThing obsolete modulation by organism of symbiont resistance gene-dependent defense response OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the resistance gene-dependent defense response of the symbiont. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont|modulation by organism of symbiont gene-for-gene resistance|modulation by organism of symbiont resistance gene-dependent defense response|modulation by organism of defense response in symbiont by specific elicitors This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0004187 biolink:NamedThing obsolete carboxypeptidase D activity OBSOLETE. Catalysis of the preferential release of a C-terminal arginine or lysine residue. Function is inhibited by diisopropyl fluorophosphate and sensitive to thiol-blocking reagents. tmpzr1t_l9r_go_relaxed.owl cereal serine carboxypeptidase II|saccharomyces cerevisiae KEX1 gene product|carboxypeptidase S1 activity|CPDW-II|KEX1DELTAp|KEX1 carboxypeptidase activity|carboxypeptidase KEX1 activity|carboxypeptidase D activity|KEX1 proteinase activity|carboxypeptidase Kex1|gene KEX1 serine carboxypeptidase GO:0004185 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005318 biolink:NamedThing obsolete phosphate:hydrogen symporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl phosphate:hydrogen symporter|phosphate:proton symporter activity GO:0015317 True molecular_function owl:Class GO:0044397 biolink:NamedThing obsolete actin cortical patch internalization OBSOLETE. A process of actin cortical patch localization in which the patch moves from the cell surface to the inside of the cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20490 GO:0006897 The reason for obsoletion is that it represents a phenotype. jl 2011-12-21T03:37:11Z True biological_process owl:Class GO:0016354 biolink:NamedThing obsolete cyclodiene susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cyclodiene susceptibility/resistance GO:0046682 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0003685 biolink:NamedThing obsolete DNA repair protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl DNA repair protein This term was made obsolete because it includes a process term. GO:0003684 True molecular_function owl:Class RO:0002427 biolink:NamedThing causally downstream of or within tmpzr1t_l9r_go_relaxed.owl RO:0002427 external causally_downstream_of_or_within GO:0052425 biolink:NamedThing obsolete modification by organism of symbiont morphology or physiology via protein secreted by type II secretion system OBSOLETE. The process by which an organism effects a change in the structure or function of its symbiont organism, mediated by a substance secreted by a type II secretion system in the organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modification by organism of symbiont morphology or physiology via protein secreted by type II secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0031935 biolink:NamedThing obsolete regulation of chromatin silencing OBSOLETE. Any process that affects the rate, extent or location of chromatin silencing. tmpzr1t_l9r_go_relaxed.owl regulation of heterochromatic silencing https://github.com/geneontology/go-ontology/issues/22060 This term was obsoleted because it was too vague: regulation of chromatin (gene) silencing takes place via upstream signaling pathways. True biological_process owl:Class GO:0030455 biolink:NamedThing obsolete MAPKKK cascade (mating sensu Fungi) OBSOLETE. MAPKKK cascade involved in transducing mating pheromone signal in a fungus. tmpzr1t_l9r_go_relaxed.owl MAPKKK cascade (mating sensu Fungi) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0008034 biolink:NamedThing obsolete lipoprotein binding OBSOLETE. Binding to a conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. tmpzr1t_l9r_go_relaxed.owl lipoprotein binding This term was made obsolete because its text definition and implicit ontology-structure definition disagreed, and as a result the term had been used in annotations with more than one meaning. GO:0071723|GO:0071813 True molecular_function owl:Class GO:0008220 biolink:NamedThing obsolete necrosis OBSOLETE. The processes that cause necrosis, the death of tissues, in another organism. tmpzr1t_l9r_go_relaxed.owl necrosis This term was made obsolete because the term has been used in the literature by groups in different areas of biology with a number of varying explicit and implicit definitions, and more appropriate terms were created. GO:0001906|GO:0008219|GO:0012501|GO:0070265|GO:0019835 True biological_process owl:Class GO:0003792 biolink:NamedThing obsolete regulation of actin thin filament length activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl regulation of actin thin filament length activity GO:0030832 This term was made obsolete because the term belongs in the process ontology. True molecular_function owl:Class GO:0070272 biolink:NamedThing obsolete proton-transporting ATP synthase complex biogenesis OBSOLETE. The biogenesis of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together. tmpzr1t_l9r_go_relaxed.owl F-type ATPase complex biogenesis https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. True biological_process owl:Class GO:0042378 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075175 biolink:NamedThing obsolete positive regulation of cAMP-mediated signaling in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its cAMP-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont cAMP-mediated signal transduction in response to host|positive regulation of cAMP-mediated signalling in response to host|positive regulation of cAMP-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0019022 biolink:NamedThing obsolete RNA viral genome OBSOLETE. A viral genome composed of ribonucleic acid. This results in genome replication and expression of genetic information being inextricably linked. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0052492 biolink:NamedThing obsolete negative regulation by host of symbiont signal transduction pathway OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the symbiont signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl inhibition by host of symbiont signal transduction pathway|down-regulation by host of symbiont signal transduction pathway|down regulation by host of symbiont signal transduction pathway|downregulation by host of symbiont signal transduction pathway|negative modulation by organism of symbiont signal transduction pathway The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class RO:0002339 biolink:NamedThing has target end location tmpzr1t_l9r_go_relaxed.owl RO:0002339 external has_target_end_location GO:1990056 biolink:NamedThing obsolete protein kinase activity required for targeting substrate to proteasomal ubiquitin-dependent protein catabolic process OBSOLETE. Catalysis of the phosphorylation of an amino acid residue in a substrate protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP, thereby targeting the substrate to the proteasomal ubiquitin mediated protein catabolic process. tmpzr1t_l9r_go_relaxed.owl protein kinase activity required for targeting substrate to proteasomal ubiquitin-dependent protein catabolic process This term was obsoleted at the TermGenie Gatekeeper stage. rb 2013-02-26T21:28:08Z True molecular_function owl:Class GO:0009280 biolink:NamedThing obsolete cell wall inner membrane OBSOLETE. In Gram-negative bacteria the membrane that separates the cytoplasm from the murein sacculus. tmpzr1t_l9r_go_relaxed.owl cytoplasmic membrane|cell wall inner membrane This term was made obsolete because it was defined inaccurately. GO:0009276 True cellular_component owl:Class GO:0004627 biolink:NamedThing obsolete calcium-dependent cytosolic phospholipase A2 activity OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion. tmpzr1t_l9r_go_relaxed.owl calcium-dependent cytosolic phospholipase A2 activity This term was made obsolete because it represents component and function information. GO:0005829|GO:0047498 True molecular_function owl:Class GO:0052145 biolink:NamedThing obsolete negative energy taxis on or near host OBSOLETE. The directed movement of a motile cell or organism on or near its host organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0075157 biolink:NamedThing obsolete positive regulation of G protein-coupled receptor signaling pathway in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its G protein-coupled receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of G-protein coupled receptor protein signalling pathway in response to host|positive regulation of symbiont G-protein coupled receptor protein-mediated signal transduction in response to host|positive regulation of G-protein coupled receptor protein signaling pathway in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0043499 biolink:NamedThing obsolete eukaryotic cell surface binding OBSOLETE. Binding to a component on the surface of a eukaryotic cell. tmpzr1t_l9r_go_relaxed.owl eukaryotic cell surface binding This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. GO:0046812|GO:0009986|GO:0005102|GO:0003823|GO:0006952 True molecular_function owl:Class GO:0052196 biolink:NamedThing obsolete negative regulation by host of symbiont defense response OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl downregulation by host of symbiont defense response|inhibition by host of symbiont defense response|down-regulation by host of symbiont defense response|down regulation by host of symbiont defense response https://github.com/geneontology/go-ontology/issues/14862 This term was made obsolete because it is not relevant for the host in a host-symbiont interaction. True biological_process owl:Class GO:0075178 biolink:NamedThing obsolete positive regulation of calcium or calmodulin-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont calcium or calmodulin-mediated signal transduction in response to host|positive regulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0008051 biolink:NamedThing obsolete farnesyl-diphosphate farnesyl transferase complex OBSOLETE. A complex that possesses farnesyl-diphosphate farnesyl transferase activity. tmpzr1t_l9r_go_relaxed.owl farnesyl-diphosphate farnesyl transferase complex This term was made obsolete because there is no evidence that this enzyme ever exists as anything other than a monomer. GO:0004310 True cellular_component owl:Class GO:0019024 biolink:NamedThing obsolete ssRNA viral genome OBSOLETE. A viral genome composed of single stranded RNA of either positive or negative sense. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0061392 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter in response to osmotic stress OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/12739 This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0071470 dph 2011-12-13T08:52:04Z True biological_process owl:Class GO:0019019 biolink:NamedThing obsolete tripartite viral genome OBSOLETE. A segmented viral genome consisting of three sub-genomic nucleic acids but each nucleic acid is packaged into a different virion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0072477 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0080158 biolink:NamedThing obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis OBSOLETE. A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. dhl 2010-09-01T04:05:55Z True biological_process owl:Class GO:0043411 biolink:NamedThing obsolete myopalladin binding OBSOLETE. Binding to myopalladin, a myofibrillar protein with titin-like Ig domains. tmpzr1t_l9r_go_relaxed.owl myopalladin binding GO:0008092 This term was made obsolete because it represents binding to an individual protein. True molecular_function owl:Class GO:0003926 biolink:NamedThing obsolete ARF small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl ARF small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0016192|GO:0016191 True molecular_function owl:Class GO:0106192 biolink:NamedThing obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T16:52:54Z True molecular_function owl:Class RO:0002008 biolink:NamedThing coincident with tmpzr1t_l9r_go_relaxed.owl RO:0002008 external coincident_with GO:0061618 biolink:NamedThing obsolete sublamina densa OBSOLETE. The part of the basement membrane that lies beneath the lamina densa, containing anchoring fibrils, anchoring plaques, collagen fibers, and elastic fibers. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because it is thought to be an experimental artefact. dph 2014-04-14T08:43:13Z True cellular_component owl:Class GO:0019849 biolink:NamedThing obsolete cytotoxin activity OBSOLETE. Acts as to cause injury to other living cells. tmpzr1t_l9r_go_relaxed.owl cytotoxin activity This term was made obsolete because it represents a class of gene products. GO:0090729 True molecular_function owl:Class GO:0008547 biolink:NamedThing obsolete protein-synthesizing GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. A GTPase involved in protein synthesis. In the initiation factor complex, it is IF-2b (98 kDa) that binds GTP and subsequently hydrolyzes it in prokaryotes. In eukaryotes, it is eIF-2 (150 kDa) that binds GTP. In the elongation phase, the GTP-hydrolyzing proteins are the EF-Tu polypeptide of the prokaryotic transfer factor (43 kDa), the eukaryotic elongation factor EF-1a (53 kDa), the prokaryotic EF-G (77 kDa), the eukaryotic EF-2 (70-110 kDa) and the signal recognition particle that play a role in endoplasmic reticulum protein synthesis (325 kDa). EF-Tu and EF1a catalyze binding of aminoacyl-tRNA to the ribosomal A-site, while EF-G and EF-2 catalyze the translocation of peptidyl-tRNA from the A-site to the P-site. GTPase activity is also involved in polypeptide release from the ribosome with the aid of the pRFs and eRFs. tmpzr1t_l9r_go_relaxed.owl protein-synthesizing GTPase activity This term was made obsolete because it represents a gene product. GO:0006412|GO:0008135|GO:0003924 True molecular_function owl:Class GO:0052047 biolink:NamedThing obsolete symbiotic process mediated by secreted substance OBSOLETE. An interaction with a second organism mediated by a substance secreted by the first organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with other organism via secreted substance during symbiotic interaction|interaction with other organism via secreted substance involved in symbiotic interaction This term was obsoleted because it has been misused to annotate host proteins. True biological_process owl:Class GO:0052217 biolink:NamedThing obsolete aerotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl aerotaxis in environment of other organism during symbiotic interaction|aerotaxis in response to environment of other organism https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0030609 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005348 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075080 biolink:NamedThing obsolete negative regulation by host of symbiont receptor-mediated signal transduction OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0006326 biolink:NamedThing obsolete bent DNA binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bent DNA binding GO:0003681 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class GO:0048828 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075085 biolink:NamedThing obsolete positive regulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of transmembrane receptor-mediated cAMP signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by host of symbiont transmembrane receptor-mediated cAMP signaling|activation by host of symbiont transmembrane receptor-mediated cAMP signal transduction|promotion by host of symbiont transmembrane receptor protein activity involved in cAMP-mediated signal transduction|upregulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction|stimulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0071571 biolink:NamedThing obsolete LRR domain-mediated complex assembly OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an LRR (leucine-rich repeat) domain interaction. tmpzr1t_l9r_go_relaxed.owl leucine-rich repeat domain-mediated complex assembly This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex. mah 2010-01-20T04:33:49Z True biological_process owl:Class GO:0052006 biolink:NamedThing obsolete catabolism by symbiont of substance in host OBSOLETE. The chemical reactions and pathways performed by an organism in its host resulting in the breakdown of substances. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of substance in host https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0004892 biolink:NamedThing obsolete B cell receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl B cell receptor activity This term was made obsolete because it describes the receptor type, and not an activity. GO:0003823 True molecular_function owl:Class GO:0106038 biolink:NamedThing obsolete vesicle assembly OBSOLETE. A process carried out at the cellular level, which results in the arrangement of constituent parts of a vesicle. Vesicle assembly begins with membrane bending (GO:0097753) and ends with fusion of the vesicle after vesicle scission (GO:0099050). tmpzr1t_l9r_go_relaxed.owl vesicle biosynthesis|vesicle formation This term was made obsolete because it is an exact synonym of 'membrane budding'. hjd 2017-07-17T13:52:28Z True biological_process owl:Class GO:0100059 biolink:NamedThing obsolete negative regulation of phenotypic switching by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phenotypic switching. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class RO:0002590 biolink:NamedThing results_in_disassembly_of tmpzr1t_l9r_go_relaxed.owl RO:0002590 external results_in_disassembly_of owl:deprecated biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0097034 biolink:NamedThing obsolete mitochondrial respiratory chain complex IV biogenesis OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex IV (also known as cytochrome c oxidase complex), a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together. tmpzr1t_l9r_go_relaxed.owl mitochondrial cytochrome c oxidase complex biogenesis https://github.com/geneontology/go-ontology/issues/15173 The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation. pr 2011-04-05T03:02:54Z True biological_process owl:Class GO:0008329 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000044 biolink:NamedThing obsolete ascorbate stabilization OBSOLETE. The reduction of the ascorbate free radical to a stable form. tmpzr1t_l9r_go_relaxed.owl vitamin C stabilization|ascorbate stabilization This term was made obsolete because it is defined as a function term and is in the process ontology. True biological_process owl:Class GO:0045713 biolink:NamedThing obsolete low-density lipoprotein particle receptor biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein particles by cells. tmpzr1t_l9r_go_relaxed.owl LDLr biosynthetic process|low-density lipoprotein receptor formation|low-density lipoprotein receptor biosynthesis|LDLr biosynthesis|low-density lipoprotein receptor anabolism|low-density lipoprotein receptor biosynthetic process|low-density lipoprotein receptor synthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0075205 biolink:NamedThing obsolete modulation by host of symbiont cAMP-mediated signal transduction OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of cAMP-mediated signal transduction in the symbiont. The cAMP-mediated signal transduction is defined as a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation by host of symbiont cAMP-mediated signalling|regulation by host of symbiont cAMP-mediated signaling|modulation by host of symbiont cAMP-mediated signaling The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1903154 biolink:NamedThing obsolete glucose transmembrane transporter activity involved in glucose import into cell OBSOLETE. Any glucose transmembrane transporter activity that is involved in glucose import into cell. tmpzr1t_l9r_go_relaxed.owl glucose permease activity involved in glucose import into cell|lactose/glucose efflux transporter activity involved in glucose import into cell|glucose transmembrane transporter activity involved in glucose import into cell|galactose/glucose (methylgalactoside) porter activity involved in glucose import into cell This term was obsoleted at the TermGenie Gatekeeper stage. dos 2014-07-09T11:55:59Z True molecular_function owl:Class GO:0071167 biolink:NamedThing obsolete ribonucleoprotein complex import into nucleus OBSOLETE. The directed movement of a ribonucleoprotein complex from the cytoplasm to the nucleus. tmpzr1t_l9r_go_relaxed.owl ribonucleoprotein complex targeting to nucleus|ribonucleoprotein complex nucleus import|ribonucleoprotein complex transport from cytoplasm to nucleus|RNP import into nucleus|ribonucleoprotein import into nucleus|ribonucleoprotein complex import into cell nucleus The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models. GO:0006606 mah 2009-11-19T04:48:42Z True biological_process owl:Class GO:0007237 biolink:NamedThing obsolete activation of Ssk2/Ssk22 proteins OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl activation of Ssk2/Ssk22 proteins This term was made obsolete because it contains gene product and species specific information. True biological_process owl:Class GO:0100056 biolink:NamedThing obsolete negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylserine biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0070271 biolink:NamedThing obsolete protein complex biogenesis OBSOLETE. A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a protein complex. Includes the synthesis of non-protein components, and those protein modifications that are involved in synthesis or assembly of the complex. tmpzr1t_l9r_go_relaxed.owl protein complex biogenesis and assembly True biological_process owl:Class GO:0038076 biolink:NamedThing obsolete MAP kinase kinase activity involved in innate immune response OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that contributes to an innate immune response. tmpzr1t_l9r_go_relaxed.owl MAP2K activity involved in innate immune response|MAPKK activity involved in innate immune response This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:35:52Z True molecular_function owl:Class GO:0044048 biolink:NamedThing obsolete interaction with host via protein secreted by type V secretion system OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type V secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0016352 biolink:NamedThing obsolete insecticide susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl insecticide susceptibility/resistance GO:0017085 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0052176 biolink:NamedThing obsolete metabolism by symbiont of host glucan OBSOLETE. The chemical reactions and pathways performed by an organism involving glucans within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0085002 biolink:NamedThing obsolete interaction with host mediated by secreted substance released by symbiont from symbiotic structure OBSOLETE. An interaction with the host organism mediated by a symbiont secreted substance released by specialized structures generated in either organisms as a result of the symbiotic interaction. The term host is used for the larger (macro) of the two members of a symbiosis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T02:38:10Z True biological_process owl:Class GO:0044144 biolink:NamedThing obsolete modulation of growth of symbiont involved in interaction with host OBSOLETE. Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl modulation of growth of symbiont during interaction with host This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-06T01:56:48Z True biological_process owl:Class GO:0019844 biolink:NamedThing obsolete endotoxin activity OBSOLETE. The function of any microbial toxin that cannot be easily separated from the structure of the cell. tmpzr1t_l9r_go_relaxed.owl endotoxin activity This term was made obsolete because it represents a class of gene products. GO:0005622|GO:0090729 True molecular_function owl:Class GO:0051186 biolink:NamedThing obsolete cofactor metabolic process OBSOLETE. The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. tmpzr1t_l9r_go_relaxed.owl cofactor metabolism 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor. True biological_process owl:Class GO:0085006 biolink:NamedThing obsolete interaction with host mediated by symbiont secreted substance released from symbiont-containing vacuole OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via a symbiont-containing vacuole, a specialized sac within the host in which the symbiont resides. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with host mediated by symbiont secreted substance released from parasitophorous vacuole This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. jl 2010-02-10T03:00:56Z True biological_process owl:Class GO:0000207 biolink:NamedThing obsolete nuclear translocation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE. Movement of a MAP kinase to the nucleus in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0051863 biolink:NamedThing obsolete translocation of DNA into symbiont OBSOLETE. The directed movement of DNA from an organism to a location inside the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl translocation of DNA into symbiont This term was made obsolete because it does not represent a real process that exists in nature. True biological_process owl:Class GO:1900392 biolink:NamedThing obsolete regulation of transport by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in regulation of transport. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. mah 2012-04-18T04:20:25Z True biological_process owl:Class GO:1990618 biolink:NamedThing obsolete ANPR-A:ANP complex OBSOLETE. The ANPR-A:ANP complex is composed of the hormone AMP bound to the extracellular domain of ANPR-A domain. It is formed in the atrium in response to atrial distension (high blood volume) and leads to guanylate cyclase activity of the ANPR-A receptor, thereby elevating intracellular cGMP levels. The end result is a reduction in blood volume and, therefore, a reduction in cardiac output and systemic blood pressure. Therefore, ANPR-A:ANP complex plays a major role in the regulation of blood pressure and salt-fluid volume homeostasis. tmpzr1t_l9r_go_relaxed.owl ANPR-A:ANP complex An example of this is [ANPR-A:ANP] in [rat] (P18910:P01161-PRO_0000391785) in PMID:15117952 (inferred from direct assay). ame 2015-01-23T15:17:47Z True cellular_component owl:Class GO:0018319 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0005559 biolink:NamedThing obsolete ribozyme OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl ribozyme Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class GO:0052570 biolink:NamedThing obsolete response to defense-related symbiont reactive oxygen species production OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl response to defense-related symbiont reactive oxygen species production This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0005517 biolink:NamedThing obsolete calmodulin inhibitor activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl calmodulin inhibitor activity This term was made obsolete because it refers to a non-existent molecular function term, 'calmodulin activity'. GO:0005516 True molecular_function owl:Class GO:0008891 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0015261 biolink:NamedThing obsolete lactate channel activity OBSOLETE. This term was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl lactate channel activity This term was made obsolete because this solute is transported by an active transporter rather than a channel. True molecular_function owl:Class GO:0052491 biolink:NamedThing obsolete negative regulation by organism of symbiont salicylic acid-mediated defense response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont SA-mediated defense response|suppression by organism of symbiont salicylic acid-mediated defense response|negative regulation by organism of symbiont salicylic acid-mediated defense response|suppression of symbiont SA mediated defense response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052421 biolink:NamedThing obsolete metabolism by organism of xylan in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving xylan within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism by organism of xylan in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was deprecated because it represents an unnecessary grouping class. True biological_process owl:Class GO:0045718 biolink:NamedThing obsolete negative regulation of flagellum assembly OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the formation of a flagellum. tmpzr1t_l9r_go_relaxed.owl negative regulation of flagellum biogenesis|down regulation of flagellum assembly|downregulation of flagellum assembly|inhibition of flagellum assembly|negative regulation of flagellum assembly|down-regulation of flagellum assembly|negative regulation of flagella assembly This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:1902018 True biological_process owl:Class GO:0003932 biolink:NamedThing obsolete SAR small monomeric GTPase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. tmpzr1t_l9r_go_relaxed.owl SAR small monomeric GTPase activity GO:0003924 This term was made obsolete because it represents a gene product. GO:0046903 True molecular_function owl:Class GO:0039655 biolink:NamedThing obsolete transport of virus in host, cell to cell via plasmodesmata OBSOLETE. The transport of a virus between adjacent cells in a multicellular organism using plasmodesmata. Plasmodesma is a fine cytoplasmic channel found in all higher plants, which connects the cytoplasm of one cell to that of an adjacent cell. tmpzr1t_l9r_go_relaxed.owl spread of virus in host, cell to cell via plasmodesmata|viral movement protein VZ:1018 bf 2013-06-20T14:47:50Z True biological_process owl:Class GO:0052213 biolink:NamedThing obsolete interaction with symbiont via secreted substance OBSOLETE. An interaction with a symbiont organism mediated by a substance secreted by a host organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with symbiont via secreted substance involved in symbiotic interaction|interaction with symbiont via secreted substance during symbiotic interaction The reason for obsoletion is that this process was not clearly defined, and propably represented some immune response. . True biological_process owl:Class GO:0016306 biolink:NamedThing obsolete phosphatidylinositol 3-kinase activity, class III OBSOLETE. A phosphoinositide 3-kinase which can only phosphorylate phosphatidylinositol. tmpzr1t_l9r_go_relaxed.owl phosphatidylinositol 3-kinase activity, class III GO:0016303 This term was made obsolete because it represents a class of gene products. True molecular_function owl:Class GO:0060286 biolink:NamedThing obsolete flagellar cell motility OBSOLETE. Cell motility due to the motion of one or more flagella. tmpzr1t_l9r_go_relaxed.owl flagellar cell motility This term was made obsolete because microtubule-based flagellum (GO:0009434) and motile cilium (GO:0031514), as referenced by this term, were determined to be equivalent and merged. When a merge for this term was considered, it was noticed that both eukaryotic and prokaryotic proteins are annotated to it because its meaning had been ambiguous so obsoletion was considered safest. GO:0071973|GO:0060285 True biological_process owl:Class GO:0060500 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in lung bud formation OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the branching morphogenesis by which the initial primordium of the lung is formed. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0060431|GO:0006357 True biological_process owl:Class GO:0003781 biolink:NamedThing obsolete actin bundling activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl actin bundling activity GO:0051017 This term was made obsolete because it represents a biological process. True molecular_function owl:Class GO:0005479 biolink:NamedThing obsolete vacuolar assembly OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vacuolar assembly GO:0007033 This term was made obsolete because it represents a biological process and not a molecular function. True molecular_function owl:Class GO:1990552 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0045803 biolink:NamedThing obsolete positive regulation of cytoskeleton OBSOLETE. Any process that activates or increases the frequency, rate or extent of the organization, biogenesis or maintenance of the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl positive regulation of cytoskeleton This term was made obsolete because cytoskeleton is not a process, so the term made no sense. GO:0007010 True biological_process owl:Class GO:0001321 biolink:NamedThing obsolete age-dependent general metabolic decline involved in replicative cell aging OBSOLETE. A process of general metabolic decline that arises in dividing cells as they age, and alters cellular metabolism to cause a decline in cell function. tmpzr1t_l9r_go_relaxed.owl age-dependent general metabolic decline during replicative cell ageing|age-dependent general metabolic decline involved in replicative cell aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class GO:0015583 biolink:NamedThing obsolete beta-glucoside [arbutin-salicin-cellobiose] permease activity OBSOLETE. Catalysis of the reaction: protein N-phosphohistidine + beta-glucoside(out) = protein histidine + beta-glucoside phosphate(in). The beta-glucoside may be arbutin, salicin or cellobiose. tmpzr1t_l9r_go_relaxed.owl beta-glucoside [arbutin-salicin-cellobiose] permease activity This term was made obsolete because it arbitrarily groups three substrates. True molecular_function owl:Class GO:0052197 biolink:NamedThing obsolete positive regulation by host of symbiont defense response OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl upregulation by host of symbiont defense response|stimulation by host of symbiont defense response|activation by host of symbiont defense response|up-regulation by host of symbiont defense response|up regulation by host of symbiont defense response The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's defense response. True biological_process owl:Class GO:0046291 biolink:NamedThing obsolete 6-hydroxycineole biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2. tmpzr1t_l9r_go_relaxed.owl 6-hydroxycineole anabolism|6-hydroxycineole biosynthetic process|6-hydroxycineole formation|hydroxycineol biosynthetic process|hydroxycineol biosynthesis|6-hydroxycineole synthesis|6-hydroxycineole biosynthesis|6-endo-hydroxycineole biosynthetic process|6-endo-hydroxycineole biosynthesis GO:0019638 This term was made obsolete because 6-hydroxycineole is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class has_primary_output biolink:NamedThing has primary output tmpzr1t_l9r_go_relaxed.owl RO:0004008 external has_primary_output GO:0033662 biolink:NamedThing obsolete modulation by symbiont of host defense-related protein level OBSOLETE. The alternation by a symbiont of the levels of defense-related proteins in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is a readout, and annotations should be made to more informative terms. True biological_process owl:Class GO:0052117 biolink:NamedThing obsolete aerotaxis in host environment OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl aerotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0052229 biolink:NamedThing obsolete metabolism of macromolecule in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism involving macromolecules within a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism of macromolecule in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0102222 biolink:NamedThing obsolete 6-phosophogluco-3-phosphogluco-starch phosphatase activity OBSOLETE. Catalysis of the reaction: m+q H2O + a 6-phosphogluco-3-phosphogluco-amylopectin <=> m+q hydrogenphosphate + a 6-phosphogluco-3-phosphogluco-amylopectin. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/15220 MetaCyc:RXN-12218 This term was obsoleted because it was created by error. True molecular_function owl:Class GO:0007248 biolink:NamedThing obsolete nuclear translocation of MAPK (mating sensu Saccharomyces) OBSOLETE. Movement of a MAP kinase to the nucleus in the context of transduction of mating pheromone signal, as described for Saccharomyces. tmpzr1t_l9r_go_relaxed.owl nuclear translocation of MAPK (mating sensu Saccharomyces) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0016764 biolink:NamedThing obsolete transferase activity, transferring other glycosyl groups OBSOLETE. Catalysis of the transfer of a glycosyl group, other than hexosyl or pentosyl, from one compound (donor) to another (acceptor). tmpzr1t_l9r_go_relaxed.owl transferase activity, transferring other glycosyl groups This term was made obsolete because it was an unnecessary grouping term. GO:0016757 True molecular_function owl:Class GO:0034437 biolink:NamedThing obsolete glycoprotein transmembrane transporter activity OBSOLETE. Enables the transfer of a glycoprotein from one side of a membrane to the other. tmpzr1t_l9r_go_relaxed.owl glycoprotein transporter activity https://github.com/geneontology/go-ontology/issues/17130 This term was obsoleted because there is no transmembrane transporter specific for glycoproteins. True molecular_function owl:Class GO:0044139 biolink:NamedThing obsolete modulation of growth of symbiont on or near host OBSOLETE. Any process in which the symbiont regulates the increase in its size or mass on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-04T04:24:59Z True biological_process owl:Class OIO:hasDbXref biolink:NamedThing database_cross_reference tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0032317 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0001053 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0100044 biolink:NamedThing obsolete negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular hyperosmotic salinity response. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0052124 biolink:NamedThing obsolete energy taxis within host OBSOLETE. The directed movement of a motile cell or organism within its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0021918 biolink:NamedThing obsolete regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of spinal cord motor neurons to specific motor neuron types along the anterior-posterior axis. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. GO:0006357|GO:0021917 True biological_process owl:Class GO:0019020 biolink:NamedThing obsolete multipartite viral genome OBSOLETE. A segmented viral genome consisting of more than three sub-genomic nucleic acids but each nucleic acid is packaged into a different virion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it does not represent a GO cellular component. True cellular_component owl:Class GO:0003704 biolink:NamedThing obsolete specific RNA polymerase II transcription factor activity OBSOLETE. Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II. tmpzr1t_l9r_go_relaxed.owl specific RNA polymerase II transcription factor activity This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. GO:0006366|GO:0000981 True molecular_function owl:Class GO:0052342 biolink:NamedThing obsolete catabolism by organism of cell wall chitin in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the cell wall of a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of cell wall chitin in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0032167 biolink:NamedThing obsolete septin patch OBSOLETE. An amorphous-appearing accumulation of septin proteins at the future site of cytokinesis. tmpzr1t_l9r_go_relaxed.owl septin patch This term was made obsolete because it was added in error; it does not refer to a normal subcellular structure. True cellular_component owl:Class GO:0009466 biolink:NamedThing obsolete class I cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class I cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0005045 biolink:NamedThing obsolete endoplasmic reticulum receptor activity OBSOLETE. A receptor in the endoplasmic reticulum. tmpzr1t_l9r_go_relaxed.owl endoplasmic reticulum receptor activity This term was made obsolete because it represents cellular component and molecular function information. GO:0038024 True molecular_function owl:Class GO:0004432 biolink:NamedThing obsolete 1-phosphatidylinositol-4-phosphate kinase, class IA OBSOLETE. A class I PI3K activated by tyrosine phosphorylation events. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol-4-phosphate kinase, class IA This term was made obsolete because it is not a valid molecular function. GO:0016308 True molecular_function owl:Class GO:0051859 biolink:NamedThing obsolete suppression of symbiont defenses OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont defense(s) by active mechanisms that normally result in the shutting down of a symbiont pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/14862 This term was made obsolete because it is not relevant for the host in a host-symbiont interaction. True biological_process owl:Class GO:0004681 biolink:NamedThing obsolete casein kinase I activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl casein kinase I activity GO:0004674 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0045563 biolink:NamedThing obsolete negative regulation of TRAIL receptor biosynthetic process OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the TRAIL (TNF-related apoptosis inducing ligand) receptor. tmpzr1t_l9r_go_relaxed.owl inhibition of TRAIL receptor biosynthetic process|down-regulation of TRAIL receptor biosynthetic process|negative regulation of TRAIL receptor biosynthesis|down regulation of TRAIL receptor biosynthetic process|downregulation of TRAIL receptor biosynthetic process|negative regulation of TRAIL receptor formation|negative regulation of TRAIL receptor anabolism|negative regulation of TRAIL receptor synthesis https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0018323 biolink:NamedThing obsolete enzyme active site formation via L-cysteine sulfinic acid OBSOLETE. The oxidation of peptidyl-cysteine to form peptidyl-L-cysteine sulfinic acid. tmpzr1t_l9r_go_relaxed.owl enzyme active site formation via L-cysteine sulphinic acid https://github.com/geneontology/go-ontology/issues/15594 RESID:AA0262 This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:9586994. GO:0018822 True biological_process owl:Class GO:0044138 biolink:NamedThing obsolete modulation of development of symbiont on or near host OBSOLETE. Any process in which the symbiont regulates its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is this term represents both a process and a component. jl 2009-08-04T04:24:25Z True biological_process owl:Class GO:0052363 biolink:NamedThing obsolete catabolism by organism of protein in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of protein macromolecules within the second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism by organism of protein in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21396 This term was obsoleted because it represents an unnecessary grouping class. True biological_process owl:Class GO:0098580 biolink:NamedThing obsolete chromatin of active sex chromosome OBSOLETE. Chromatin that is part of an active sex chromosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20159 This term was obsoleted because it represents a biological process, not a cellular localization. True cellular_component owl:Class GO:0048176 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0075182 biolink:NamedThing obsolete negative regulation of symbiont transcription in response to host OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of its transcription as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/22014 This term was obsoleted because it represents a GO-CAM model. GO:0045892 True biological_process owl:Class GO:0043900 biolink:NamedThing obsolete regulation of multi-organism process OBSOLETE. Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it is an unnecessary grouping term. True biological_process owl:Class GO:0007016 biolink:NamedThing obsolete cytoskeletal anchoring at plasma membrane OBSOLETE. A cytoskeleton organization process that directly or indirectly links cytoskeletal filaments to the plasma membrane. tmpzr1t_l9r_go_relaxed.owl cytoskeletal anchoring activity https://github.com/geneontology/go-ontology/issues/19119 This term was obsoleted because it represents a molecular function. GO:0007010|GO:0106006 True biological_process owl:Class GO:0021777 biolink:NamedThing obsolete BMP signaling pathway involved in spinal cord association neuron specification OBSOLETE. A series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to its commitment to an association neuron fate. tmpzr1t_l9r_go_relaxed.owl bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification|bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification|BMP signalling pathway involved in spinal cord association neuron specification The reason for obsoletion is that this term represents a GO-CAM model. True biological_process owl:Class GO:0043681 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0052560 biolink:NamedThing obsolete induction by organism of symbiont immune response OBSOLETE. Any process by which an organism activates the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl induction by organism of symbiont immune response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0006250 biolink:NamedThing obsolete CDP reduction OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl CDP reduction This term was made obsolete because it represents a molecular function rather than a biological process. GO:0051063 True biological_process owl:Class GO:0005027 biolink:NamedThing obsolete NGF/TNF (6 C-domain) receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl NGF/TNF (6 C-domain) receptor activity This term was made obsolete because it represents a protein family rather than a molecular function. GO:0005031 True molecular_function owl:Class GO:0009479 biolink:NamedThing obsolete cytochrome f OBSOLETE. A cytochrome c that is characteristic of green plants and transfers electrons to plastocyanin. tmpzr1t_l9r_go_relaxed.owl cytochrome f GO:0045158 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0051397 biolink:NamedThing obsolete N-terminal basic amino acid aminopeptidase activity OBSOLETE. Catalysis of the hydrolysis of basic amino acid residues at the N-terminal of an oligopeptide or polypeptide chain. tmpzr1t_l9r_go_relaxed.owl N-terminal basic amino acid aminopeptidase activity GO:0004177 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0015470 biolink:NamedThing obsolete bacteriocin activity OBSOLETE. Polypeptide antibiotic secreted by bacteria and able to kill bacteria of susceptible strains after absorption by specific cell surface receptor. tmpzr1t_l9r_go_relaxed.owl bacteriocin activity This term was made obsolete because it represents a gene product. GO:0019835|GO:0005102 True molecular_function owl:Class GO:1990804 biolink:NamedThing obsolete protein phosphorylation involved in double-strand break repair via nonhomologous end joining OBSOLETE. Any protein phosphorylation process that is required for double-strand break repair via nonhomologous end joining. tmpzr1t_l9r_go_relaxed.owl protein amino acid phosphorylation involved in NHEJ|protein phosphorylation involved in NHEJ|protein amino acid phosphorylation involved in double-strand break repair via nonhomologous end joining https://github.com/geneontology/go-ontology/issues/14137 This term has been obsoleted because it represents a GO-CAM model. rb 2015-07-16T21:54:01Z True biological_process owl:Class GO:0100062 biolink:NamedThing obsolete positive regulation of SREBP signaling pathway by transcription factor catabolic process OBSOLETE. Any transcription factor catabolic process process that positively_regulates SREBP signaling pathway. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that this term should be represented by a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0106201 biolink:NamedThing obsolete translocase activity acting on amino acids and peptides linked to the hydrolysis of a diphosphate OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to the hydrolysis of a diphosphate. tmpzr1t_l9r_go_relaxed.owl EC:7.4.3.- This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter banch of the onotolgy was consided confusing. hjd 2019-05-08T18:28:18Z True molecular_function owl:Class GO:0004433 biolink:NamedThing obsolete 1-phosphatidylinositol-4-phosphate kinase, class IB OBSOLETE. A class I PI3K activated via heterotrimeric G-proteins. tmpzr1t_l9r_go_relaxed.owl 1-phosphatidylinositol-4-phosphate kinase, class IB This term was made obsolete because it is not a valid molecular function. GO:0016308 True molecular_function owl:Class GO:0045306 biolink:NamedThing obsolete inhibitor of the establishment of competence for transformation activity OBSOLETE. Inhibits the establishment of competence for transformation. tmpzr1t_l9r_go_relaxed.owl inhibitor of the establishment of competence for transformation activity GO:0045808 This term was made obsolete because it does not represent a true function. True molecular_function owl:Class GO:0008027 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0046779 biolink:NamedThing obsolete suppression by virus of expression of host genes with introns OBSOLETE. Any viral process that discriminates against and subsequently inhibits host transcripts containing introns, thus allowing only intronless viral mRNA to be fully processed. tmpzr1t_l9r_go_relaxed.owl viral inhibition of expression of host genes with introns|negative regulation by virus of expression of host genes with introns The reason for obsoleting this term is that it is too specific. True biological_process owl:Class GO:0140461 biolink:NamedThing obsolete subtelomeric heterochromatin organization OBSOLETE. The organization of chromatin into heterochromatin at the subtelomeric region of a chromosome. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19396|https://github.com/geneontology/go-ontology/issues/22043 This term has been obsoleted because it represents a different process, GO:0097240 attachment of telomeric heterochromatin to nuclear envelope. pg 2020-05-06T07:46:53Z True biological_process owl:Class GO:0016733 biolink:NamedThing obsolete iron-iron nitrogenase activity OBSOLETE. Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + N2 + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate. tmpzr1t_l9r_go_relaxed.owl iron-iron nitrogenase activity This term was made obsolete because it represents a cellular component. GO:0016163|GO:0016611 True molecular_function owl:Class GO:0005806 biolink:NamedThing obsolete Golgi-ER transport vesicle OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl Golgi-ER transport vesicle This term was made obsolete as part of a general reorganization of vesicle and vesicle coat terms; its position in the ontology suggested that a new term was required. GO:0030142 True cellular_component owl:Class GO:0075160 biolink:NamedThing obsolete positive regulation of G-protein alpha subunit-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its G-protein alpha subunit-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation of symbiont G-protein alpha subunit-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0004192 biolink:NamedThing obsolete cathepsin D activity OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity similar to, but narrower than, that of pepsin A. Does not cleave the Gln4-His5 bond in the B chain of insulin. tmpzr1t_l9r_go_relaxed.owl cathepsin D activity GO:0004190 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0052220 biolink:NamedThing obsolete positive aerotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive aerotaxis in response to environment of other organism|positive aerotaxis in environment of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0005400 biolink:NamedThing obsolete peroxisomal membrane transporter OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl peroxisomal membrane transporter This term was made obsolete because it contains both component and function information. GO:0005777|GO:0005215 True molecular_function owl:Class GO:0050517 biolink:NamedThing obsolete inositol hexakisphosphate kinase activity OBSOLETE. Catalysis of the reactions: ATP + 1D-myo-inositol hexakisphosphate = ADP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate, and ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + diphospho-1D-myo-inositol tetrakisphosphate (isomeric configuration unknown). tmpzr1t_l9r_go_relaxed.owl inositol-hexakisphosphate kinase activity|inositol hexakisphosphate kinase activity|ATP:1D-myo-inositol-hexakisphosphate phosphotransferase activity|ATP:1D-myo-inositol-hexakisphosphate 5-phosphotransferase activity MetaCyc:2.7.1.152-RXN|EC:2.7.4.21 Note that this was EC:2.7.1.152. This term was made obsolete because this activity is currently defined as catalyzing two reactions based on a gene product. The reactions listed in the definition can be catalyzed independently by other gene products. True molecular_function owl:Class GO:0005202 biolink:NamedThing obsolete collagen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl collagen This term was made obsolete because it does not represent a molecular function. GO:0005581 True molecular_function owl:Class GO:0075090 biolink:NamedThing obsolete modulation by host of symbiont signal transduction mediated by G-protein alpha subunit OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont signal transduction mediated by G-protein alpha subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0007050 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0009278 biolink:NamedThing obsolete murein sacculus OBSOLETE. A peptidoglycan polymer that forms the shape-determining structure of the cell all of Gram-negative bacteria. tmpzr1t_l9r_go_relaxed.owl murein sacculus This term was made obsolete because it was defined inaccurately. GO:0009276 True cellular_component owl:Class GO:0030403 biolink:NamedThing obsolete collagenase 4 activity OBSOLETE. Was not defined before being made obsolete. tmpzr1t_l9r_go_relaxed.owl matrix metalloproteinase 18|MMP-18|collagenase 4 activity GO:0004252 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0100036 biolink:NamedThing obsolete positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates purine nucleotide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0003778 biolink:NamedThing obsolete dynactin motor OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dynactin motor This term was made obsolete because the dynactin complex is not a motor as such, but does regulate the dynein motor complex. True molecular_function owl:Class results_in_maintenance_of biolink:NamedThing results_in_maintenance_of tmpzr1t_l9r_go_relaxed.owl GOREL:0012006 external results_in_maintenance_of GO:0017039 biolink:NamedThing obsolete dipeptidyl-peptidase III activity OBSOLETE. Catalysis of the release of an N-terminal dipeptide from a peptide comprising four or more residues, with broad specificity; also acts on dipeptidyl 2-naphthylamides. tmpzr1t_l9r_go_relaxed.owl dipeptidyl-peptidase III activity|DPP III activity|enkephalinase B activity|dipeptidyl arylamidase III activity|dipeptidyl aminopeptidase III activity|red cell angiotensinase activity GO:0008239 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0046231 biolink:NamedThing obsolete carbazole biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen. tmpzr1t_l9r_go_relaxed.owl carbazole formation|carbazole biosynthesis|carbazole anabolism|carbazole synthesis|carbazole biosynthetic process GO:0018884 This term was made obsolete because carbazole is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0008724 biolink:NamedThing obsolete DNA topoisomerase IV activity OBSOLETE. Catalysis of the ATP-independent breakage of DNA, followed by passage and rejoining. It also catalyzes the relaxation of supercoiled DNA, and the decatenation and unknotting of DNA in vivo. tmpzr1t_l9r_go_relaxed.owl DNA topoisomerase IV activity GO:0003918 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0045101 biolink:NamedThing obsolete glial fibrillary acidic protein OBSOLETE. Glial fibrillary acidic protein forms filaments in the glial cells that surround neurons and in astrocytes. tmpzr1t_l9r_go_relaxed.owl glial fibrillary acidic protein|GFAP This term was made obsolete because it represents a gene product. GO:0045098 True cellular_component owl:Class GO:0044148 biolink:NamedThing obsolete positive regulation of growth of symbiont involved in interaction with host OBSOLETE. Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism. tmpzr1t_l9r_go_relaxed.owl positive regulation of growth of symbiont during interaction with host This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-06T02:20:27Z True biological_process owl:Class GO:0052175 biolink:NamedThing obsolete metabolism by symbiont of host carbohydrate OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0031605 biolink:NamedThing obsolete ER proteasome core complex, alpha-subunit complex OBSOLETE. The subunits forming the outer ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0034887 biolink:NamedThing obsolete 1,4-dihydroisonicotinate 2,3-dioxygenase activity OBSOLETE. Catalysis of the reaction: 1,4-dihydroisonicotinate + O2 = gamma-N-formylaminovinylacetaldehyde + CO2. tmpzr1t_l9r_go_relaxed.owl 1,4-dihydroisonicotinate 2,3-dioxygenase activity This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity. GO:0016702 True molecular_function owl:Class GO:0006503 biolink:NamedThing obsolete C-terminal protein farnesylation OBSOLETE. The covalent or non-covalent attachment of a farnesyl group to the carboxy terminus of a protein. tmpzr1t_l9r_go_relaxed.owl C-terminal protein farnesylation GO:0018343 This term was made obsolete because the process is not exclusive to the carboxy-terminus of a protein. True biological_process owl:Class GO:0001303 biolink:NamedThing obsolete nucleolar fragmentation involved in replicative aging OBSOLETE. A nucleolar fragmentation process that gives rise to multiple rounded structures and that occurs in conjunction with increasing age in dividing cells. tmpzr1t_l9r_go_relaxed.owl nucleolar fragmentation during replicative ageing|nucleolar fragmentation during replicative aging https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. True biological_process owl:Class transports_or_maintains_localization_of biolink:NamedThing transports or maintains localization of tmpzr1t_l9r_go_relaxed.owl RO:0002313 external transports_or_maintains_localization_of GO:0052419 biolink:NamedThing obsolete metabolism by host of substance in symbiont OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0007273 biolink:NamedThing obsolete regulation of synapse OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl regulation of synapse This term was made obsolete because the term string made no sense. GO:0007268 True biological_process owl:Class GO:0052470 biolink:NamedThing obsolete modulation by host of symbiont signal transduction pathway OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the symbiont signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0005191 biolink:NamedThing obsolete acidic epididymal glycoprotein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl acidic epididymal glycoprotein This term was made obsolete because it describes modification and presence in body fluids rather than an activity. True molecular_function owl:Class GO:0015006 biolink:NamedThing obsolete plastocyanin OBSOLETE. A copper-containing electron carrier acting between cytochrome b(6)-f and P700 of photosystem I. tmpzr1t_l9r_go_relaxed.owl plastocyanin GO:0046028 This term was made obsolete because it does not represent a molecular function. True molecular_function owl:Class GO:0016681 biolink:NamedThing obsolete oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces a cytochrome. tmpzr1t_l9r_go_relaxed.owl EC:1.10.2.- This term was obsoleted because the EC it represented was obsoleted. True molecular_function owl:Class GO:0006291 biolink:NamedThing obsolete pyrimidine-dimer repair, DNA damage excision OBSOLETE. The excision of damaged DNA during pyrimidine-dimer repair. A large multienzyme complex scans the DNA for a distortion in the double helix rather than for a specific base change. Once a bulky lesion is found, the phosphodiester backbone of the abnormal strand is cleaved on both sides of the distortion, and the portion of the strand containing the lesion (an oligonucleotide) is peeled away from the DNA double helix by a DNA helicase enzyme. tmpzr1t_l9r_go_relaxed.owl pyrimidine-dimer repair, DNA damage excision This term was made obsolete because this process can be subdivided into multiple processes. GO:0006289 True biological_process owl:Class GO:0045205 biolink:NamedThing obsolete MAPK transporter activity OBSOLETE. Enables the directed movement of MAP kinase into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl MAPK transporter activity This term was made obsolete because we do not know what it was intended to represent when it was created. True molecular_function owl:Class RO:0002355 biolink:NamedThing results in structural organization of tmpzr1t_l9r_go_relaxed.owl RO:0002355 external results_in_structural_organization_of GO:0030972 biolink:NamedThing obsolete cleavage of cytosolic proteins involved in execution phase of apoptosis OBSOLETE. The proteolytic degradation of proteins in the cytosol that contributes to apoptosis. tmpzr1t_l9r_go_relaxed.owl cleavage of cytosolic proteins involved in apoptosis|apoptotic cleavage of cytosolic proteins|cleavage of cytosolic proteins involved in execution phase of apoptosis This term was obsoleted because it refers to targets of effector proteins (caspases); the 'cleavage' process referred to in the term name is in fact the same molecular function represented by GO:0097200 'cysteine-type endopeptidase activity involved in execution phase of apoptosis'. GO:0097200 True biological_process owl:Class GO:0035829 biolink:NamedThing obsolete renal rubidium ion absorption OBSOLETE. A renal system process in which rubidium ions are taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures. tmpzr1t_l9r_go_relaxed.owl renal rubidium cation absorption|renal Rb+ absorption This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-04T03:01:05Z True biological_process owl:Class GO:0039567 biolink:NamedThing obsolete suppression by virus of host STAT1 activity by negative regulation of STAT protein import into nucleus OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT1 (signal transducer and activator of transcription-1) activity by retaining STAT1 in the cytoplasm, so STAT1 is unable to translocate to the nucleus to activate transcription of its target genes. tmpzr1t_l9r_go_relaxed.owl suppression by virus of host STAT1 activity by cytoplasmic sequestering of STAT1|cytoplasmic sequestration of STAT1 The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. bf 2012-03-12T04:24:36Z True biological_process owl:Class GO:0042965 biolink:NamedThing obsolete glutaredoxin biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of a small disulfide-containing redox protein that serves as a glutathione-disulfide oxidoreductase. tmpzr1t_l9r_go_relaxed.owl glutaredoxin formation|glutaredoxin biosynthesis|glutaredoxin synthesis|glutaredoxin anabolism This term was made obsolete because it refers to the biosynthesis of a protein. True biological_process owl:Class GO:0001684 biolink:NamedThing obsolete axonemal dynein intermediate chain OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl axonemal dynein intermediate chain GO:0005858 This term was made obsolete because it represents a single gene product and not a complex. True cellular_component owl:Class GO:0008042 biolink:NamedThing obsolete iron-sulfur electron transfer carrier OBSOLETE. An iron-sulfur protein that serves as an electron acceptor and electron donor in an electron transport system. tmpzr1t_l9r_go_relaxed.owl iron-sulfur electron transfer carrier|iron-sulphur electron transfer carrier|ferredoxin GO:0009055 This term was made obsolete because it refers to a class of gene products. True molecular_function owl:Class GO:0035982 biolink:NamedThing obsolete age-dependent behavioral decline OBSOLETE. A developmental process that arises as an organism progresses toward the end of its lifespan that results in a decline in behavioral activities such as locomotory behavior, and learning or memory. tmpzr1t_l9r_go_relaxed.owl age-related behavioral decline|behavioral aging|age-dependent behavioural decline GO:0090647 This term was made obsolete because it describes a phenotype. bf 2011-08-23T01:30:55Z True biological_process owl:Class GO:0001302 biolink:NamedThing obsolete replicative cell aging OBSOLETE. The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division. tmpzr1t_l9r_go_relaxed.owl replicative cell ageing https://github.com/geneontology/go-ontology/issues/20007 This term was obsoleted because it represents an assay, not a true biological process. GO:0090399 True biological_process owl:Class GO:0052506 biolink:NamedThing obsolete positive regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont ethylene-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl activation by organism of defense-related symbiont ethylene-mediated signal transduction pathway|positive regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway|upregulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway|induction by organism of defense-related symbiont ethylene-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0035416 biolink:NamedThing obsolete positive regulation of mitotic prometaphase OBSOLETE. Any process that activates or increases the frequency, rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. tmpzr1t_l9r_go_relaxed.owl positive regulation of mitotic prometaphase This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated. bf 2010-03-29T10:52:55Z True biological_process owl:Class GO:0010140 biolink:NamedThing obsolete adenine, hypoxanthine and their nucleoside salvage OBSOLETE. The pathway by which adenine, hypoxanthine and their nucleosides from purine nucleotides breakdown are converted back to purine nucleotides. The salvage pathway is important where there is no de-novo purine nucleotide biosynthesis. tmpzr1t_l9r_go_relaxed.owl adenine, hypoxanthine and their nucleoside salvage This term was made obsolete because it represents multiple processes that are represented elsewhere in the process ontology. GO:0006168|GO:0043103|GO:0006190|GO:0006169 True biological_process owl:Class GO:0006205 biolink:NamedThing obsolete pyrimidine metabolic process OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pyrimidine metabolic process This term was made obsolete because more appropriate terms were created. GO:0006213|GO:0006206|GO:0006220 True biological_process owl:Class GO:0008197 biolink:NamedThing obsolete yolk protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl yolk protein This term was made obsolete because it does not represent a molecular function. GO:0045735|GO:0005198 True molecular_function owl:Class GO:0007011 biolink:NamedThing obsolete regulation of cytoskeleton OBSOLETE. Any process that modulates the frequency, rate or extent of the organization, biogenesis or maintenance of the cytoskeleton. tmpzr1t_l9r_go_relaxed.owl regulation of cytoskeleton This term was made obsolete because cytoskeleton is neither a process nor a trait, so the term made no sense. GO:0007010 True biological_process owl:Class GO:0005075 biolink:NamedThing obsolete pathway-specific SMAD protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pathway-specific SMAD protein This term was made obsolete because it represents a family of gene products. True molecular_function owl:Class GO:0075094 biolink:NamedThing obsolete positive regulation by host of symbiont signal transduction mediated by G-protein beta subunit OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction mediated by G-protein beta subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:1900526 biolink:NamedThing obsolete negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of phosphatidylserine biosynthetic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter. tmpzr1t_l9r_go_relaxed.owl negative regulation of phosphatidylserine biosynthesis by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylserine formation by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylserine anabolism by negative regulation of transcription from RNA polymerase II promoter|negative regulation of phosphatidylserine synthesis by negative regulation of transcription from RNA polymerase II promoter This term was obsoleted because it represents a GO-CAM model. dgf 2012-05-03T05:14:10Z True biological_process owl:Class GO:0052360 biolink:NamedThing obsolete catabolism by host of symbiont macromolecule OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of macromolecules within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0003675 biolink:NamedThing obsolete protein OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl protein Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused. True cellular_component owl:Class RO:0002344 biolink:NamedThing results in transport to from or in tmpzr1t_l9r_go_relaxed.owl RO:0002344 external results_in_transport_to_from_or_in IAO:0000115 biolink:NamedThing definition tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0061466 biolink:NamedThing obsolete plasma membrane part of cell junction OBSOLETE. The part of the plasma membrane that contributes to the structure of a cell junction. tmpzr1t_l9r_go_relaxed.owl The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM. dph 2012-10-19T13:53:44Z True cellular_component owl:Class GO:0000199 biolink:NamedThing obsolete activation of MAPK activity involved in cell wall organization or biogenesis OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase in the context of cell wall biogenesis, the assembly and arrangement of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells. tmpzr1t_l9r_go_relaxed.owl cell wall biogenesis, activation of MAPK activity|activation of MAPK activity involved in cell wall biogenesis|activation of MAPK activity involved in cell wall integrity https://github.com/geneontology/go-ontology/issues/20242 This term was obsoleted because it represents a GO-CAM model. True biological_process owl:Class GO:0075152 biolink:NamedThing obsolete negative regulation of receptor-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation of symbiont receptor-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0000206 biolink:NamedThing obsolete inactivation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE. Downregulation of MAP kinase activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930). tmpzr1t_l9r_go_relaxed.owl inactivation of MAPK during sporulation (sensu Saccharomyces) This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0044143 biolink:NamedThing obsolete positive regulation of development of symbiont on or near host surface OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is this term represents both a process and a component. jl 2009-08-06T01:35:48Z True biological_process owl:Class GO:0035392 biolink:NamedThing obsolete maintenance of chromatin silencing at telomere OBSOLETE. The maintenance of chromatin in a transcriptionally silent state such as heterochromatin at the telomere. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/19301 This term was obsoleted because it represented a phenotype. bf 2010-03-22T10:25:57Z True biological_process owl:Class GO:0100028 biolink:NamedThing obsolete regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0043563 biolink:NamedThing obsolete odorant transporter activity OBSOLETE. Enables the directed movement of odorants, any substance capable of stimulating the sense of smell, into, out of or within a cell, or between cells. tmpzr1t_l9r_go_relaxed.owl True molecular_function owl:Class GO:0061992 biolink:NamedThing obsolete ATP-dependent chaperone mediated protein folding OBSOLETE. The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone, and dependent on ATP hydrolysis. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21930 This term was obsoleted because it represents a molecular function. GO:0006457|GO:0140662 dph 2018-02-15T23:34:28Z True biological_process owl:Class GO:0004680 biolink:NamedThing obsolete casein kinase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl casein kinase activity GO:0004674 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005480 biolink:NamedThing obsolete vesicle transport OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl vesicle transport GO:0016192 This term was made obsolete because it represents a biological process and not a molecular function. True molecular_function owl:Class GO:2000680 biolink:NamedThing obsolete regulation of rubidium ion transport OBSOLETE. Any process that modulates the frequency, rate or extent of rubidium ion transport. tmpzr1t_l9r_go_relaxed.owl regulation of Rb+ transport|regulation of rubidium cation transport This term has been obsoleted because it represents an assay, and not a physiological process. bf 2011-05-10T10:54:31Z True biological_process owl:Class GO:0098537 biolink:NamedThing obsolete lobed nucleus OBSOLETE. Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. Examples include the nuclei of mature basophils, eosinophils and neutrophils in mice and humans. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/20764 This term was obsoleted because it does not correspond to a specific type of nucleus, it is a morphologically different nucleus present in certain cell types. dos 2013-10-22T18:31:36Z True cellular_component owl:Class GO:0045561 biolink:NamedThing obsolete regulation of TRAIL receptor 1 biosynthetic process OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 1. tmpzr1t_l9r_go_relaxed.owl regulation of TRAIL receptor 1 anabolism|regulation of TRAIL receptor 1 biosynthesis|regulation of TRAIL receptor 1 synthesis|regulation of TRAIL receptor 1 formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0008165 biolink:NamedThing obsolete pyrethroid resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl pyrethroid resistance GO:0046684 This term was made obsolete because 'resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0075237 biolink:NamedThing obsolete obsolete negative regulation of zoospore movement on or near host OBSOLETE. OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of zoospore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0000181 biolink:NamedThing obsolete cytosolic small ribosomal subunit OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytosolic small ribosomal subunit This term was made obsolete because more specific children exist. GO:0022627 True cellular_component owl:Class GO:0070188 biolink:NamedThing obsolete Stn1-Ten1 complex OBSOLETE. A nuclear telomere cap complex that is formed by the association of the Stn1 and Ten1 proteins with telomeric DNA; in some species a third protein is present. tmpzr1t_l9r_go_relaxed.owl GO:1990879 This term was made obsolete because it was inaccurate. True cellular_component owl:Class GO:0055125 biolink:NamedThing obsolete Nic96 complex OBSOLETE. A protein complex that forms part of the nuclear pore complex, and is required for its correct assembly. In Saccharomyces cerevisiae Nic96 contains Nsp1p, Nup57p, Nup49p, and Nic96p. tmpzr1t_l9r_go_relaxed.owl Nic96 complex GO:0044612 jid 2009-10-12T08:35:18Z True cellular_component owl:Class OIO:http://purl.org/dc/terms/source biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0000229 biolink:NamedThing obsolete cytoplasmic chromosome OBSOLETE. A chromosome found in the cytoplasm. tmpzr1t_l9r_go_relaxed.owl cytoplasmic interphase chromosome https://github.com/geneontology/go-ontology/issues/22177 GO:0005694 This term was obsoleted because it is an unnecessary grouping class. True cellular_component owl:Class GO:0048152 biolink:NamedThing obsolete S100 beta biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of S100 beta protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS. tmpzr1t_l9r_go_relaxed.owl S100 beta biosynthesis|S100 beta anabolism|S100 beta synthesis|S100 beta formation https://github.com/geneontology/go-ontology/issues/19900 The reason for obsoletion is that those represent specific gene products, and genes annotated to those terms should be annotated to 'regulation of gene expression' or 'regulation of transcription' or some signaling term. True biological_process owl:Class GO:0008100 biolink:NamedThing obsolete lipophorin OBSOLETE. Any member of the major class of lipid-transporting proteins found in the hemolymph of insects. tmpzr1t_l9r_go_relaxed.owl lipophorin GO:0005319 This term was made obsolete because it represents a class of gene products. True molecular_function owl:Class GO:0038071 biolink:NamedThing obsolete MAP kinase activity involved in conjugation with cellular fusion OBSOLETE. Catalysis of the reaction: protein + ATP = protein phosphate + ADP by a mitogen-activated protein kinase, as part of a MAPK signaling cascade that contributes to conjugation with cellular fusion. tmpzr1t_l9r_go_relaxed.owl MAPK activity involved in conjugation with cellular fusion This term has been obsoleted because it represents a GO-CAM model rather than a single GO term. bf 2012-01-26T02:31:57Z True molecular_function owl:Class GO:0075097 biolink:NamedThing obsolete positive regulation by host of symbiont signal transduction mediated by G-protein gamma subunit OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction mediated by G-protein gamma subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:2000325 biolink:NamedThing obsolete regulation of nuclear receptor coactivator activity OBSOLETE. Any process that modulates the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity. tmpzr1t_l9r_go_relaxed.owl regulation of ligand-dependent nuclear receptor transcription coactivator activity|regulation of ligand-dependent nuclear receptor transcription co-activator activity|regulation of nuclear receptor transcription coactivator activity This term was obsoleted because it represents a molecular function. vk 2011-01-18T06:29:32Z True biological_process owl:Class GO:0052211 biolink:NamedThing obsolete interaction with other organism via protein secreted by type II secretion system involved in symbiotic interaction OBSOLETE. An interaction with a second organism mediated by a substance secreted by the first organism by a type II secretion system, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with other organism via protein secreted by type II secretion system during symbiotic interaction This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target. True biological_process owl:Class GO:0001087 biolink:NamedThing obsolete transcription factor activity, TFIIB-class binding OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIB class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. tmpzr1t_l9r_go_relaxed.owl TFIIB-class binding transcription factor activity This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. GO:0001093 krc 2010-10-28T02:18:00Z True molecular_function owl:Class GO:0052123 biolink:NamedThing obsolete negative chemotaxis in host environment OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis in response to host environment https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class immediately_precedes biolink:NamedThing immediately_precedes tmpzr1t_l9r_go_relaxed.owl RO:0002090 external immediately_precedes GO:0045102 biolink:NamedThing obsolete peripherin OBSOLETE. Peripherin is a type III intermediate filament protein found in neurons of the peripheral nervous system. tmpzr1t_l9r_go_relaxed.owl peripherin This term was made obsolete because it represents a gene product. GO:0045098 True cellular_component owl:Class GO:1905927 biolink:NamedThing obsolete regulation of invadopodium disassembly OBSOLETE. Any process that modulates the frequency, rate or extent of invadopodium disassembly. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO. sl 2017-02-08T21:38:57Z True biological_process owl:Class GO:0052214 biolink:NamedThing obsolete metabolism of substance in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism in a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl metabolism of substance in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class GO:0015064 biolink:NamedThing obsolete UV-sensitive opsin OBSOLETE. An opsin with maximal absorption below 400 nm. tmpzr1t_l9r_go_relaxed.owl UV-sensitive opsin This term was made obsolete because it refers to a class of proteins. GO:0016021|GO:0009881|GO:0016918|GO:0007604|GO:0046876 True molecular_function owl:Class RO:0002007 biolink:NamedThing bounding layer of tmpzr1t_l9r_go_relaxed.owl RO:0002007 external bounding_layer_of GO:0052485 biolink:NamedThing obsolete negative regulation by organism of symbiont inflammatory response OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the inflammatory response of a symbiont organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of symbiont inflammatory response This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:1990741 biolink:NamedThing obsolete non-selective cation channel activity OBSOLETE. Enables the non-selective, energy-independent passage of cations across a lipid bilayer down a concentration gradient. tmpzr1t_l9r_go_relaxed.owl nonselective cation channel activity This term was made obsolete because it was added in error. pr 2015-05-11T13:27:15Z True molecular_function owl:Class GO:0075033 biolink:NamedThing obsolete appressorium septum formation OBSOLETE. The process in which a symbiont partition is formed to separate the appressorium from the germination tube, occurring during appressorium formation. tmpzr1t_l9r_go_relaxed.owl septum formation involved in appressorium formation on or near host|septum formation during appressorium formation on or near host|septum formation involved in appressorium formation https://github.com/geneontology/go-ontology/issues/20305|https://github.com/geneontology/go-ontology/issues/21923 The reason for obsoletion is that there is no evidence that this process exists. True biological_process owl:Class GOP:creation_date biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0052223 biolink:NamedThing obsolete negative chemotaxis in environment of other organism involved in symbiotic interaction OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on, within or near a second organism, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative chemotaxis in response to environment of other organism|negative chemotaxis in environment of other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/18819 This term was obsoleted because it represents both a process and a location. True biological_process owl:Class GO:0030066 biolink:NamedThing obsolete cytochrome b6 OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl cytochrome b-563|cytochrome b6 GO:0045158 This term was made obsolete because it represents a gene product. True molecular_function owl:Class GO:0005558 biolink:NamedThing obsolete minor histocompatibility antigen OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl minor histocompatibility antigen This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. True molecular_function owl:Class GO:0100037 biolink:NamedThing obsolete positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates cellular alcohol catabolic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0003967 biolink:NamedThing obsolete RNA-directed DNA polymerase, group II intron encoded OBSOLETE. Catalysis of RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time; cannot initiate a chain de novo. tmpzr1t_l9r_go_relaxed.owl RNA-directed DNA polymerase, group II intron encoded GO:0003964 This term was made obsolete because it does not represent a function distinct from its parent term 'RNA-directed DNA polymerase'. True molecular_function owl:Class GO:1900387 biolink:NamedThing obsolete negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of cell-cell adhesion. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. pr 2012-04-18T12:01:19Z True biological_process owl:Class GO:0004894 biolink:NamedThing obsolete T cell receptor activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl T cell receptor activity This term was made obsolete because it describes a receptor type, and not an activity. GO:0042605|GO:0032395|GO:0032394 True molecular_function owl:Class rdfs:label biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0046996 biolink:NamedThing obsolete oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with NAD(P)H as one donor, and the other dehydrogenated OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and the latter donor is dehydrogenated. tmpzr1t_l9r_go_relaxed.owl oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with NADH or NADPH as one donor, and the other dehydrogenated https://github.com/geneontology/go-ontology/issues/21133 EC:1.14.21.- This term was obsoleted because it represented an unnecessary grouping class. True molecular_function owl:Class OIO:is_class_level biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0070270 biolink:NamedThing obsolete mitotic catastrophe OBSOLETE. A type of programmed cell death that occurs during or shortly after a dysregulated or failed mitosis and can be accompanied by morphological alterations including micronucleation and multinucleation. tmpzr1t_l9r_go_relaxed.owl cell death occurring during metaphase|mitotic catastrophe|cell death preceded by multinucleation This term was made obsolete because it does not refer to a true process, but rather to the consequences of aberrations occurred during mitosis. True biological_process owl:Class GO:1990607 biolink:NamedThing obsolete detection of stimulus involved in cytokinesis after mitosis checkpoint OBSOLETE. The series of events in which information about whether cytokinesis has correctly completed, is received and converted into a molecular signal, contributing to a cytokinesis after mitosis checkpoint. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted at the TermGenie Gatekeeper stage. jl 2015-01-19T14:43:34Z True biological_process owl:Class GO:0023060 biolink:NamedThing obsolete signal transmission OBSOLETE. The process in which a signal is released and/or conveyed from one location to another. tmpzr1t_l9r_go_relaxed.owl signal transmission This term was made obsolete because it was an unnecessary grouping term. GO:0023052 2010-02-16T09:30:50Z True biological_process owl:Class RO:0002016 biolink:NamedThing has necessary component activity tmpzr1t_l9r_go_relaxed.owl RO:0002016 external has_necessary_component_activity GO:0030022 biolink:NamedThing obsolete adhesive extracellular matrix constituent OBSOLETE. A constituent of the extracellular matrix that facilitates attachment of cells to the matrix. tmpzr1t_l9r_go_relaxed.owl adhesive extracellular matrix constituent This term was made obsolete because it does not represent a molecular function. GO:0050839|GO:0031012|GO:0030674|GO:0050840 True molecular_function owl:Class GO:0007246 biolink:NamedThing obsolete activation of MAPKK (mating sensu Saccharomyces) OBSOLETE. Upregulation of a MAP kinase kinase in the context of transduction of mating pheromone signal, as described for Saccharomyces. tmpzr1t_l9r_go_relaxed.owl activation of MAPKK (mating sensu Saccharomyces) GO:0000750 This term was made obsolete because it is a gene product specific term. True biological_process owl:Class GO:0052327 biolink:NamedThing obsolete interaction with symbiont via protein secreted by type II secretion system OBSOLETE. An interaction with the symbiont organism mediated by a substance secreted by the other organism by a type II secretion system. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl interaction with symbiont via protein secreted by type II secretion system This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0046301 biolink:NamedThing obsolete 2-chloro-N-isopropylacetanilide biosynthetic process OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants. tmpzr1t_l9r_go_relaxed.owl 2-chloro-N-isopropylacetanilide anabolism|2-chloro-N-isopropylacetanilide biosynthetic process|2-chloro-N-isopropylacetanilide synthesis|2-chloro-N-isopropylacetanilide formation|2-chloro-N-isopropylacetanilide biosynthesis GO:0018889 This term was made obsolete because 2-chloro-N-isopropylacetanilide is not synthesized by living organisms and GO does not cover non-biological processes. True biological_process owl:Class GO:0052534 biolink:NamedThing obsolete positive regulation by organism of induced systemic resistance in symbiont OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of induced systemic resistance in the symbiont organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl positive regulation by organism of induced systemic resistance in symbiont This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052481 biolink:NamedThing obsolete negative regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont salicylic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl negative regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|negative modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway|negative regulation by organism of defense-related symbiont SA-mediated signal transduction pathway|negative modulation by organism of defense-related symbiont SA-mediated signal transduction pathway This term was made obsolete because it does not represent a real biological process. True biological_process owl:Class GO:0052127 biolink:NamedThing obsolete movement on or near host OBSOLETE. The directed movement of an organism or motile cell on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represented both a process and a location. True biological_process owl:Class GO:0007577 biolink:NamedThing obsolete autophagic death (sensu Saccharomyces) OBSOLETE. This process is a type of programmed cell death pathway similar to apoptosis and necrosis observed in multicellular organisms. It is characterized by cellular enlargement (necrosis) and presence of many autophagic bodies along with degradation of cellular components (nucleus, Golgi, ER), protein, DNA and RNA. tmpzr1t_l9r_go_relaxed.owl autophagic death (sensu Saccharomyces) This term was made obsolete because a more correct term has been created. GO:0048102 True biological_process owl:Class GO:0006494 biolink:NamedThing obsolete protein amino acid terminal glycosylation OBSOLETE. A protein amino acid glycosylation process in which a sugar unit is added to a free alpha-amino or alpha-carboxyl terminal of a peptide. tmpzr1t_l9r_go_relaxed.owl protein amino acid terminal glycosylation This term was made obsolete because the term name is ambiguous. GO:0006486 True biological_process owl:Class GO:0009985 biolink:NamedThing obsolete dihydroflavonol(thiole) lyase activity OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl dihydroflavonol(thiole) lyase activity This term was made obsolete because there is no record of why it was added, and no evidence can be found to suggest that this activity exists. True molecular_function owl:Class GO:0008304 biolink:NamedThing obsolete eukaryotic translation initiation factor 4 complex OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl eIF-4|eukaryotic translation initiation factor 4 complex GO:0016281 This term was made obsolete because more specific terms were created. True cellular_component owl:Class GO:0019880 biolink:NamedThing obsolete bacteriocin susceptibility/resistance OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl bacteriocin susceptibility/resistance GO:0046678 This term was made obsolete because 'susceptibility/resistance' implies a phenotype rather than a biological process. True biological_process owl:Class GO:0048517 biolink:NamedThing obsolete positive regulation of trichome initiation (sensu Magnoliophyta) OBSOLETE. Any process that activates or increases the frequency, rate or extent of trichome initiation; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398). tmpzr1t_l9r_go_relaxed.owl positive regulation of trichome initiation (sensu Magnoliophyta) This term was made obsolete because more appropriate terms were created. GO:0048629 True biological_process owl:Class GO:0009480 biolink:NamedThing obsolete class IIb cytochrome c OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl class IIb cytochrome c This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class GO:0075100 biolink:NamedThing obsolete positive regulation by host of symbiont protein kinase-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of protein kinase-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0075177 biolink:NamedThing obsolete regulation of calcium or calmodulin-mediated signal transduction in response to host OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont calcium or calmodulin-mediated signal transduction in response to host|modulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host This term was obsoleted because there is no evidence that this process exists. True biological_process owl:Class GO:0044128 biolink:NamedThing obsolete positive regulation of growth of symbiont in host OBSOLETE. Any process in which the symbiont activates, maintains or increases its size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it was partially redundant with other terms and its usage has been inconsistent. jl 2009-08-04T02:20:57Z True biological_process owl:Class GO:0075082 biolink:NamedThing obsolete positive regulation by host of symbiont transmembrane receptor-mediated signal transduction OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway. True biological_process owl:Class GO:0052227 biolink:NamedThing obsolete catabolism of substance in other organism involved in symbiotic interaction OBSOLETE. The chemical reactions and pathways performed by an organism in a second organism resulting in the breakdown of substances, where the two organisms are in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl catabolism of substance in other organism during symbiotic interaction https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class causally_upstream_of_or_within biolink:NamedThing causally upstream of or within tmpzr1t_l9r_go_relaxed.owl RO:0002418 external causally_upstream_of_or_within GO:0052194 biolink:NamedThing obsolete movement on or near symbiont OBSOLETE. The directed movement of an organism or motile cell on or near its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl True biological_process owl:Class GO:0100007 biolink:NamedThing obsolete negative regulation of ceramide biosynthetic process by transcription from RNA polymerase II promoter OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates ceramide biosynthetic process. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents a GO-CAM model. cjm 2015-04-02T04:13:19Z True biological_process owl:Class GO:0007002 biolink:NamedThing obsolete centromere binding OBSOLETE. (Was not defined before being made obsolete). tmpzr1t_l9r_go_relaxed.owl centromere binding GO:0019237 This term was made obsolete because it represents a molecular function and not a biological process. True biological_process owl:Class overlaps biolink:NamedThing overlaps tmpzr1t_l9r_go_relaxed.owl RO:0002131 external overlaps OIO:shorthand biolink:NamedThing shorthand tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0044657 biolink:NamedThing obsolete pore formation in membrane of other organism during symbiotic interaction OBSOLETE. The aggregation, arrangement and bonding together of a set of components by an organism to form a pore complex in a membrane of another organism, occurring as part of a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl This term was obsoleted because it represents an unnecessary grouping class. jl 2012-08-01T13:12:10Z True biological_process owl:Class GO:0009462 biolink:NamedThing obsolete cytochrome d OBSOLETE. A cytochrome in which the prosthetic group is a tetrapyrrolic chelate of iron in which the degree of conjugation of double bonds is less than in porphyrin. This definition would appear to include siroheme proteins (e.g. nitrite and sulfite reductases), but these are not cytochromes. tmpzr1t_l9r_go_relaxed.owl cytochrome d This term was made obsolete because it represents a gene product. GO:0009055 True molecular_function owl:Class OIO:default-namespace biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0031596 biolink:NamedThing obsolete ER proteasome complex OBSOLETE. A proteasome found in the endoplasmic reticulum of a cell. tmpzr1t_l9r_go_relaxed.owl This term was made obsolete because there is no evidence in the literature of its existence. True cellular_component owl:Class GO:0070036 biolink:NamedThing obsolete GTP-dependent helicase activity OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate, to drive the unwinding of a DNA or RNA helix. tmpzr1t_l9r_go_relaxed.owl The reason for obsoletion is that helicases only and always use ATP (although under very specific experimental conditions GTP can perhaps be used; this is not the case in vivo). True molecular_function owl:Class GO:0075049 biolink:NamedThing obsolete modulation of symbiont cell wall strengthening involved in entry into host OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl modulation of symbiont cell wall strengthening during entry into host The reason for the obsoletion is that there is no evidence that those processes exist. True biological_process owl:Class has_intermediate biolink:NamedThing has intermediate tmpzr1t_l9r_go_relaxed.owl RO:0002505 external has_intermediate causally_upstream_of,_positive_effect biolink:NamedThing causally upstream of, positive effect tmpzr1t_l9r_go_relaxed.owl RO:0002304 external causally_upstream_of,_positive_effect RO:0002180 biolink:NamedThing has component tmpzr1t_l9r_go_relaxed.owl RO:0002180 external has_component RO:0002232 biolink:NamedThing has end location tmpzr1t_l9r_go_relaxed.owl RO:0002232 external has_end_location OIO:http://purl.obolibrary.org/obo/IAO_0000233 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty process_has_causal_agent biolink:NamedThing process has causal agent tmpzr1t_l9r_go_relaxed.owl RO:0002608 external process_has_causal_agent GO:0031938 biolink:NamedThing obsolete regulation of chromatin silencing at telomere OBSOLETE. Any process that affects the rate, extent or location of chromatin silencing at telomeres. tmpzr1t_l9r_go_relaxed.owl regulation of heterochromatic silencing at telomere https://github.com/geneontology/go-ontology/issues/22027 This term was obsoleted because there is no evidence that chromatin silencing /heterochromatin assembly are directly regulated. GO:0031509 True biological_process owl:Class OIO:hasOBOFormatVersion biolink:NamedThing has_obo_format_version tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty IAO:0100001 biolink:NamedThing term replaced by tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty has_primary_input_or_output biolink:NamedThing has primary input or output tmpzr1t_l9r_go_relaxed.owl RO:0004007 external has_primary_input_or_output GO:0052356 biolink:NamedThing obsolete catabolism by host of symbiont cell wall chitin OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. tmpzr1t_l9r_go_relaxed.owl https://github.com/geneontology/go-ontology/issues/21469 This term was obsoleted because it represents a molecular function. True biological_process owl:Class OIO:hasBroadSynonym biolink:NamedThing has_broad_synonym tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty IAO:0000116 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0051821 biolink:NamedThing obsolete dissemination or transmission of organism from other organism involved in symbiotic interaction OBSOLETE. The movement of an organism from a second organism to another place in the environment, where the two organisms are in a symbiotic interaction. The first organism may also move to a different organism. tmpzr1t_l9r_go_relaxed.owl dissemination or transmission of organism from other organism during symbiotic interaction This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont. True biological_process owl:Class RO:0002335 biolink:NamedThing negatively regulated by tmpzr1t_l9r_go_relaxed.owl RO:0002335 external negatively_regulated_by OIO:inSubset biolink:NamedThing in_subset tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty OIO:is_metadata_tag biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0018347 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:1900165 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class rdfs:comment biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:0050712 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class GO:0000135 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class OIO:created_by biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty GO:1902713 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl True owl:Class IAO:0000589 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty NCBITaxon:451864 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl IAO:0000231 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty OIO:consider biolink:NamedThing consider tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty OIO:id biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl owl:AnnotationProperty NCBITaxon:33154 biolink:NamedThing tmpzr1t_l9r_go_relaxed.owl